### ERV316A3_1p36.33 ### chr1 rmsk gene 40736 42273 . - . gene_id "ERV316A3_1p36.33"; transcript_id "ERV316A3_1p36.33"; locus "ERV316A3_1p36.33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0001"; model_cov "893"; model_pct "17.1"; chr1 rmsk exon 40736 40878 260 - . gene_id "ERV316A3_1p36.33"; transcript_id "ERV316A3_1p36.33"; locus "ERV316A3_1p36.33"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0001"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "232"; repStart "-113"; chr1 rmsk exon 41394 42273 765 - . gene_id "ERV316A3_1p36.33"; transcript_id "ERV316A3_1p36.33"; locus "ERV316A3_1p36.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0001"; repClass "LTR"; repEnd "4789"; repFamily "ERVL"; repLeft "3896"; repStart "-437"; ### HML3_1p36.33 ### chr1 rmsk gene 895544 898699 . - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0002"; model_cov "2681"; model_pct "44.5"; chr1 rmsk exon 895544 895868 2132 - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0002"; repClass "LTR"; repEnd "4917"; repFamily "ERVK"; repLeft "4595"; repStart "-1104"; chr1 rmsk exon 895870 896099 1753 - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0002"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr1 rmsk exon 896100 897617 11200 - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0002"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1271"; repStart "-3223"; chr1 rmsk exon 897610 898198 4252 - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0002"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr1 rmsk exon 898199 898699 4148 - . gene_id "HML3_1p36.33"; transcript_id "HML3_1p36.33"; locus "HML3_1p36.33"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0002"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4B_1p36.33 ### chr1 rmsk gene 1275713 1280788 . - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0001"; model_cov "1740"; model_pct "25.7"; chr1 rmsk exon 1275713 1276255 2513 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "593"; repFamily "ERV1"; repLeft "1"; repStart "-17"; chr1 rmsk exon 1276256 1276481 1263 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6531"; repStart "0"; chr1 rmsk exon 1276779 1277126 1351 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "2256"; repFamily "ERV1"; repLeft "1913"; repStart "-4502"; chr1 rmsk exon 1277476 1277548 1407 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "1321"; repStart "-5371"; chr1 rmsk exon 1277844 1278126 2504 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "1320"; repFamily "ERV1"; repLeft "1031"; repStart "-5438"; chr1 rmsk exon 1278422 1278488 2504 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "966"; repStart "-5728"; chr1 rmsk exon 1278793 1279090 2504 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "965"; repFamily "ERV1"; repLeft "698"; repStart "-5793"; chr1 rmsk exon 1279194 1279400 2551 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "723"; repFamily "ERV1"; repLeft "534"; repStart "-6035"; chr1 rmsk exon 1279701 1279992 2551 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "238"; repStart "-6225"; chr1 rmsk exon 1280483 1280788 1517 - . gene_id "MER4B_1p36.33"; transcript_id "MER4B_1p36.33"; locus "MER4B_1p36.33"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0001"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "3"; repStart "-283"; ### HARLEQUIN_1p36.33 ### chr1 rmsk gene 1412252 1418852 . - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0001"; model_cov "5443"; model_pct "78.9"; chr1 rmsk exon 1412252 1412721 3762 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 1412722 1416234 21774 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "3352"; repStart "-1"; chr1 rmsk exon 1416234 1416770 5770 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "2044"; repStart "-4322"; chr1 rmsk exon 1417072 1417504 5770 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1572"; repStart "-4853"; chr1 rmsk exon 1417491 1418377 5980 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "1"; repStart "-5996"; chr1 rmsk exon 1418378 1418852 3922 - . gene_id "HARLEQUIN_1p36.33"; transcript_id "HARLEQUIN_1p36.33"; locus "HARLEQUIN_1p36.33"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0001"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_1p36.33 ### chr1 rmsk gene 1449072 1449730 . - . gene_id "HERVIP10F_1p36.33"; transcript_id "HERVIP10F_1p36.33"; locus "HERVIP10F_1p36.33"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0001"; model_cov "1169"; model_pct "15.1"; chr1 rmsk exon 1449072 1449730 850 - . gene_id "HERVIP10F_1p36.33"; transcript_id "HERVIP10F_1p36.33"; locus "HERVIP10F_1p36.33"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0001"; repClass "LTR"; repEnd "1903"; repFamily "ERV1"; repLeft "734"; repStart "-5834"; ### HERVL_1p36.32 ### chr1 rmsk gene 2625292 2626288 . + . gene_id "HERVL_1p36.32"; transcript_id "HERVL_1p36.32"; locus "HERVL_1p36.32"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0001"; model_cov "989"; model_pct "17.5"; chr1 rmsk exon 2625292 2626288 7142 + . gene_id "HERVL_1p36.32"; transcript_id "HERVL_1p36.32"; locus "HERVL_1p36.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0001"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1685"; repStart "2980"; ### ERVLE_1p36.32a ### chr1 rmsk gene 2637771 2638501 . + . gene_id "ERVLE_1p36.32a"; transcript_id "ERVLE_1p36.32a"; locus "ERVLE_1p36.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0005"; model_cov "842"; model_pct "14.9"; chr1 rmsk exon 2637771 2638501 682 + . gene_id "ERVLE_1p36.32a"; transcript_id "ERVLE_1p36.32a"; locus "ERVLE_1p36.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0005"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "-4486"; repStart "339"; ### ERVLE_1p36.32b ### chr1 rmsk gene 2897224 2898434 . - . gene_id "ERVLE_1p36.32b"; transcript_id "ERVLE_1p36.32b"; locus "ERVLE_1p36.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0006"; model_cov "1265"; model_pct "22.3"; chr1 rmsk exon 2897224 2898434 974 - . gene_id "ERVLE_1p36.32b"; transcript_id "ERVLE_1p36.32b"; locus "ERVLE_1p36.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0006"; repClass "LTR"; repEnd "5341"; repFamily "ERVL"; repLeft "4076"; repStart "-326"; ### ERVLB4_1p36.32 ### chr1 rmsk gene 3002414 3003699 . - . gene_id "ERVLB4_1p36.32"; transcript_id "ERVLB4_1p36.32"; locus "ERVLB4_1p36.32"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0002"; model_cov "1354"; model_pct "23.7"; chr1 rmsk exon 3002414 3002759 362 - . gene_id "ERVLB4_1p36.32"; transcript_id "ERVLB4_1p36.32"; locus "ERVLB4_1p36.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0002"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "3981"; repStart "-1317"; chr1 rmsk exon 3002845 3003699 546 - . gene_id "ERVLB4_1p36.32"; transcript_id "ERVLB4_1p36.32"; locus "ERVLB4_1p36.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0002"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "2873"; repStart "-1903"; ### HML4_1p36.32 ### chr1 rmsk gene 3801472 3806930 . - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0002"; model_cov "4678"; model_pct "57.6"; chr1 rmsk exon 3801472 3801948 3926 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "479"; repFamily "ERVK"; repLeft "1"; repStart "-528"; chr1 rmsk exon 3801949 3803126 6624 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "6948"; repStart "0"; chr1 rmsk exon 3803436 3803669 6624 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "6947"; repFamily "ERVK"; repLeft "6733"; repStart "-1169"; chr1 rmsk exon 3803659 3805070 3295 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "6092"; repFamily "ERVK"; repLeft "3756"; repStart "-2024"; chr1 rmsk exon 3805059 3805231 460 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "4129"; repFamily "ERVK"; repLeft "3965"; repStart "-3987"; chr1 rmsk exon 3805219 3805729 807 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "1318"; repFamily "ERVK"; repLeft "730"; repStart "-6798"; chr1 rmsk exon 3805727 3805932 1257 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "209"; repFamily "ERVK"; repLeft "1"; repStart "-7907"; chr1 rmsk exon 3805933 3806930 8224 - . gene_id "HML4_1p36.32"; transcript_id "HML4_1p36.32"; locus "HML4_1p36.32"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0002"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_1p36.32c ### chr1 rmsk gene 3969312 3969956 . - . gene_id "ERVLE_1p36.32c"; transcript_id "ERVLE_1p36.32c"; locus "ERVLE_1p36.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0008"; model_cov "644"; model_pct "11.4"; chr1 rmsk exon 3969312 3969956 841 - . gene_id "ERVLE_1p36.32c"; transcript_id "ERVLE_1p36.32c"; locus "ERVLE_1p36.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0008"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "151"; repStart "-4872"; ### HERVH_1p36.32a ### chr1 rmsk gene 4180997 4187514 . - . gene_id "HERVH_1p36.32a"; transcript_id "HERVH_1p36.32a"; locus "HERVH_1p36.32a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0001"; model_cov "6439"; model_pct "83.5"; chr1 rmsk exon 4180997 4185574 34034 - . gene_id "HERVH_1p36.32a"; transcript_id "HERVH_1p36.32a"; locus "HERVH_1p36.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0001"; repClass "LTR"; repEnd "7688"; repFamily "ERV1"; repLeft "3140"; repStart "-25"; chr1 rmsk exon 4185554 4187477 13268 - . gene_id "HERVH_1p36.32a"; transcript_id "HERVH_1p36.32a"; locus "HERVH_1p36.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0001"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1104"; repStart "-4718"; chr1 rmsk exon 4187478 4187514 279 - . gene_id "HERVH_1p36.32a"; transcript_id "HERVH_1p36.32a"; locus "HERVH_1p36.32a"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_0001"; repClass "LTR"; repEnd "37"; repFamily "ERV1"; repLeft "1"; repStart "-413"; ### HERVL66_1p36.32 ### chr1 rmsk gene 4587568 4591911 . - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0001"; model_cov "2860"; model_pct "66.1"; chr1 rmsk exon 4587568 4588184 4257 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 4588185 4588858 3798 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3569"; repStart "0"; chr1 rmsk exon 4588846 4589559 4622 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "3357"; repFamily "ERVL"; repLeft "2654"; repStart "-972"; chr1 rmsk exon 4589540 4589619 489 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1717"; repStart "-2532"; chr1 rmsk exon 4589710 4589899 1504 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "1626"; repFamily "ERVL"; repLeft "1436"; repStart "-2703"; chr1 rmsk exon 4589900 4590141 7870 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "887"; repStart "-3199"; chr1 rmsk exon 4590451 4591334 7870 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "886"; repFamily "ERVL"; repLeft "2"; repStart "-3443"; chr1 rmsk exon 4591335 4591911 4450 - . gene_id "HERVL66_1p36.32"; transcript_id "HERVL66_1p36.32"; locus "HERVL66_1p36.32"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0001"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_1p36.32b ### chr1 rmsk gene 5044796 5053098 . + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0002"; model_cov "7379"; model_pct "95.7"; chr1 rmsk exon 5044796 5045235 3350 + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0002"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 5045238 5048268 20615 + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0002"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 5048248 5048394 894 + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0002"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 5048384 5052649 29309 + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0002"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3478"; chr1 rmsk exon 5052650 5053098 3597 + . gene_id "HERVH_1p36.32b"; transcript_id "HERVH_1p36.32b"; locus "HERVH_1p36.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0002"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_1p36.32c ### chr1 rmsk gene 5114487 5118888 . + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0003"; model_cov "3925"; model_pct "50.9"; chr1 rmsk exon 5114487 5116526 14173 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "962"; chr1 rmsk exon 5116521 5116670 820 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 5116670 5117165 3479 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr1 rmsk exon 5117168 5117829 4307 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 5117861 5118062 1375 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5614"; chr1 rmsk exon 5118061 5118439 2506 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 5118440 5118888 3424 + . gene_id "HERVH_1p36.32c"; transcript_id "HERVH_1p36.32c"; locus "HERVH_1p36.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0003"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_1p36.31a ### chr1 rmsk gene 5580463 5582352 . - . gene_id "ERVLE_1p36.31a"; transcript_id "ERVLE_1p36.31a"; locus "ERVLE_1p36.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0011"; model_cov "612"; model_pct "10.8"; chr1 rmsk exon 5580463 5580950 557 - . gene_id "ERVLE_1p36.31a"; transcript_id "ERVLE_1p36.31a"; locus "ERVLE_1p36.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0011"; repClass "LTR"; repEnd "1905"; repFamily "ERVL"; repLeft "1405"; repStart "-3762"; chr1 rmsk exon 5582240 5582352 274 - . gene_id "ERVLE_1p36.31a"; transcript_id "ERVLE_1p36.31a"; locus "ERVLE_1p36.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0011"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "442"; repStart "-5113"; ### ERVLE_1p36.31b ### chr1 rmsk gene 5820123 5823005 . + . gene_id "ERVLE_1p36.31b"; transcript_id "ERVLE_1p36.31b"; locus "ERVLE_1p36.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0012"; model_cov "2266"; model_pct "40.0"; chr1 rmsk exon 5820123 5820594 852 + . gene_id "ERVLE_1p36.31b"; transcript_id "ERVLE_1p36.31b"; locus "ERVLE_1p36.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0012"; repClass "LTR"; repEnd "2276"; repFamily "ERVL"; repLeft "-3391"; repStart "1795"; chr1 rmsk exon 5820723 5821047 561 + . gene_id "ERVLE_1p36.31b"; transcript_id "ERVLE_1p36.31b"; locus "ERVLE_1p36.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0012"; repClass "LTR"; repEnd "2784"; repFamily "ERVL"; repLeft "-2883"; repStart "2443"; chr1 rmsk exon 5821599 5822501 1404 + . gene_id "ERVLE_1p36.31b"; transcript_id "ERVLE_1p36.31b"; locus "ERVLE_1p36.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0012"; repClass "LTR"; repEnd "3834"; repFamily "ERVL"; repLeft "-1833"; repStart "2955"; chr1 rmsk exon 5822505 5823005 1080 + . gene_id "ERVLE_1p36.31b"; transcript_id "ERVLE_1p36.31b"; locus "ERVLE_1p36.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0012"; repClass "LTR"; repEnd "4508"; repFamily "ERVL"; repLeft "-1159"; repStart "3943"; ### HERVFH21_1p36.31 ### chr1 rmsk gene 6560297 6570283 . - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0001"; model_cov "6434"; model_pct "98.5"; chr1 rmsk exon 6560297 6560439 559 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "281"; repStart "0"; chr1 rmsk exon 6560626 6560700 2632 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "6453"; repStart "0"; chr1 rmsk exon 6561008 6561429 6639 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "6278"; repFamily "ERV1"; repLeft "5979"; repStart "-251"; chr1 rmsk exon 6561730 6561831 6639 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "5978"; repFamily "ERV1"; repLeft "5883"; repStart "-551"; chr1 rmsk exon 6562582 6563794 6639 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "5882"; repFamily "ERV1"; repLeft "4669"; repStart "-647"; chr1 rmsk exon 6564127 6565087 5085 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "4687"; repFamily "ERV1"; repLeft "3819"; repStart "-1842"; chr1 rmsk exon 6565082 6565604 2130 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "3880"; repFamily "ERV1"; repLeft "3349"; repStart "-2649"; chr1 rmsk exon 6565721 6566609 11810 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "3357"; repFamily "ERV1"; repLeft "2464"; repStart "-3172"; chr1 rmsk exon 6566894 6567279 11810 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "2463"; repFamily "ERV1"; repLeft "2057"; repStart "-4066"; chr1 rmsk exon 6567580 6568168 11810 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "2056"; repFamily "ERV1"; repLeft "1519"; repStart "-4473"; chr1 rmsk exon 6568483 6570024 11810 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "1518"; repFamily "ERV1"; repLeft "48"; repStart "-5011"; chr1 rmsk exon 6570052 6570109 2295 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "47"; repFamily "ERV1"; repLeft "1"; repStart "-6482"; chr1 rmsk exon 6570110 6570283 636 - . gene_id "HERVFH21_1p36.31"; transcript_id "HERVFH21_1p36.31"; locus "HERVFH21_1p36.31"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0001"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "262"; repStart "0"; ### ERV316A3_1p36.23 ### chr1 rmsk gene 7320314 7322250 . - . gene_id "ERV316A3_1p36.23"; transcript_id "ERV316A3_1p36.23"; locus "ERV316A3_1p36.23"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0004"; model_cov "1774"; model_pct "33.9"; chr1 rmsk exon 7320314 7320649 2551 - . gene_id "ERV316A3_1p36.23"; transcript_id "ERV316A3_1p36.23"; locus "ERV316A3_1p36.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0004"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "2109"; repStart "-2766"; chr1 rmsk exon 7320675 7321218 2551 - . gene_id "ERV316A3_1p36.23"; transcript_id "ERV316A3_1p36.23"; locus "ERV316A3_1p36.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0004"; repClass "LTR"; repEnd "2108"; repFamily "ERVL"; repLeft "1576"; repStart "-3118"; chr1 rmsk exon 7321252 7321715 1547 - . gene_id "ERV316A3_1p36.23"; transcript_id "ERV316A3_1p36.23"; locus "ERV316A3_1p36.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0004"; repClass "LTR"; repEnd "1471"; repFamily "ERVL"; repLeft "997"; repStart "-3755"; chr1 rmsk exon 7321844 7322250 1091 - . gene_id "ERV316A3_1p36.23"; transcript_id "ERV316A3_1p36.23"; locus "ERV316A3_1p36.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0004"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "403"; repStart "-4406"; ### HERV9_1p36.23 ### chr1 rmsk gene 8895877 8899114 . + . gene_id "HERV9_1p36.23"; transcript_id "HERV9_1p36.23"; locus "HERV9_1p36.23"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0001"; model_cov "2441"; model_pct "28.9"; chr1 rmsk exon 8895877 8898307 19583 + . gene_id "HERV9_1p36.23"; transcript_id "HERV9_1p36.23"; locus "HERV9_1p36.23"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0001"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "5995"; chr1 rmsk exon 8898308 8899114 6195 + . gene_id "HERV9_1p36.23"; transcript_id "HERV9_1p36.23"; locus "HERV9_1p36.23"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0001"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_1p36.23 ### chr1 rmsk gene 8907810 8908879 . - . gene_id "HML3_1p36.23"; transcript_id "HML3_1p36.23"; locus "HML3_1p36.23"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0003"; model_cov "857"; model_pct "14.2"; chr1 rmsk exon 8907810 8907995 1331 - . gene_id "HML3_1p36.23"; transcript_id "HML3_1p36.23"; locus "HML3_1p36.23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0003"; repClass "LTR"; repEnd "1817"; repFamily "ERVK"; repLeft "1638"; repStart "-4204"; chr1 rmsk exon 8907992 8908629 4464 - . gene_id "HML3_1p36.23"; transcript_id "HML3_1p36.23"; locus "HML3_1p36.23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0003"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "1"; repStart "-5342"; chr1 rmsk exon 8908630 8908879 1785 - . gene_id "HML3_1p36.23"; transcript_id "HML3_1p36.23"; locus "HML3_1p36.23"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0003"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "244"; repStart "0"; ### HERVFH21_1p36.23 ### chr1 rmsk gene 8921052 8927668 . + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0002"; model_cov "5303"; model_pct "81.2"; chr1 rmsk exon 8921052 8921231 613 + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0002"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "296"; chr1 rmsk exon 8921232 8924068 17789 + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0002"; repClass "LTR"; repEnd "2761"; repFamily "ERV1"; repLeft "-3768"; repStart "1"; chr1 rmsk exon 8924338 8925978 17789 + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0002"; repClass "LTR"; repEnd "4476"; repFamily "ERV1"; repLeft "-2053"; repStart "2762"; chr1 rmsk exon 8926497 8927320 2443 + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0002"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "0"; repStart "5700"; chr1 rmsk exon 8927489 8927668 671 + . gene_id "HERVFH21_1p36.23"; transcript_id "HERVFH21_1p36.23"; locus "HERVFH21_1p36.23"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0002"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "296"; ### HERVFH19_1p36.23a ### chr1 rmsk gene 9086800 9088393 . + . gene_id "HERVFH19_1p36.23a"; transcript_id "HERVFH19_1p36.23a"; locus "HERVFH19_1p36.23a"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0001"; model_cov "880"; model_pct "11.4"; chr1 rmsk exon 9086800 9087193 1871 + . gene_id "HERVFH19_1p36.23a"; transcript_id "HERVFH19_1p36.23a"; locus "HERVFH19_1p36.23a"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0001"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "-28"; repStart "1"; chr1 rmsk exon 9087504 9087529 1871 + . gene_id "HERVFH19_1p36.23a"; transcript_id "HERVFH19_1p36.23a"; locus "HERVFH19_1p36.23a"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0001"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "-1"; repStart "459"; chr1 rmsk exon 9087530 9087918 2584 + . gene_id "HERVFH19_1p36.23a"; transcript_id "HERVFH19_1p36.23a"; locus "HERVFH19_1p36.23a"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0001"; repClass "LTR"; repEnd "401"; repFamily "ERV1"; repLeft "-7318"; repStart "1"; chr1 rmsk exon 9087912 9088393 3105 + . gene_id "HERVFH19_1p36.23a"; transcript_id "HERVFH19_1p36.23a"; locus "HERVFH19_1p36.23a"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0001"; repClass "LTR"; repEnd "3315"; repFamily "ERV1"; repLeft "-4404"; repStart "2835"; ### HERVFH19_1p36.23b ### chr1 rmsk gene 9088458 9096029 . + . gene_id "HERVFH19_1p36.23b"; transcript_id "HERVFH19_1p36.23b"; locus "HERVFH19_1p36.23b"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0002"; model_cov "6539"; model_pct "84.7"; chr1 rmsk exon 9088458 9088502 46177 + . gene_id "HERVFH19_1p36.23b"; transcript_id "HERVFH19_1p36.23b"; locus "HERVFH19_1p36.23b"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0002"; repClass "LTR"; repEnd "1217"; repFamily "ERV1"; repLeft "-6502"; repStart "1178"; chr1 rmsk exon 9088811 9094338 46177 + . gene_id "HERVFH19_1p36.23b"; transcript_id "HERVFH19_1p36.23b"; locus "HERVFH19_1p36.23b"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0002"; repClass "LTR"; repEnd "6770"; repFamily "ERV1"; repLeft "-949"; repStart "1218"; chr1 rmsk exon 9094629 9095599 46177 + . gene_id "HERVFH19_1p36.23b"; transcript_id "HERVFH19_1p36.23b"; locus "HERVFH19_1p36.23b"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0002"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6771"; chr1 rmsk exon 9095600 9096029 1909 + . gene_id "HERVFH19_1p36.23b"; transcript_id "HERVFH19_1p36.23b"; locus "HERVFH19_1p36.23b"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0002"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_1p36.22 ### chr1 rmsk gene 9297468 9302644 . + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0004"; model_cov "3724"; model_pct "65.2"; chr1 rmsk exon 9297468 9298369 17410 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "1776"; repFamily "ERVL"; repLeft "-3938"; repStart "914"; chr1 rmsk exon 9298476 9299356 17410 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "-3003"; repStart "1777"; chr1 rmsk exon 9299983 9301207 17410 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "3911"; repFamily "ERVL"; repLeft "-1803"; repStart "2712"; chr1 rmsk exon 9301513 9302091 17410 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-1173"; repStart "3912"; chr1 rmsk exon 9302116 9302225 525 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5613"; chr1 rmsk exon 9302227 9302644 2100 + . gene_id "ERVLB4_1p36.22"; transcript_id "ERVLB4_1p36.22"; locus "ERVLB4_1p36.22"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0004"; repClass "LTR"; repEnd "471"; repFamily "ERVL"; repLeft "-246"; repStart "1"; ### ERVL_1p36.22a ### chr1 rmsk gene 9302227 9304444 . + . gene_id "ERVL_1p36.22a"; transcript_id "ERVL_1p36.22a"; locus "ERVL_1p36.22a"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0003"; model_cov "1165"; model_pct "20.2"; chr1 rmsk exon 9302227 9302644 2100 + . gene_id "ERVL_1p36.22a"; transcript_id "ERVL_1p36.22a"; locus "ERVL_1p36.22a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0003"; repClass "LTR"; repEnd "471"; repFamily "ERVL"; repLeft "-246"; repStart "1"; chr1 rmsk exon 9302649 9303809 6146 + . gene_id "ERVL_1p36.22a"; transcript_id "ERVL_1p36.22a"; locus "ERVL_1p36.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0003"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "4591"; chr1 rmsk exon 9303811 9304444 3510 + . gene_id "ERVL_1p36.22a"; transcript_id "ERVL_1p36.22a"; locus "ERVL_1p36.22a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0003"; repClass "LTR"; repEnd "713"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### ERVL_1p36.22b ### chr1 rmsk gene 9496729 9497380 . - . gene_id "ERVL_1p36.22b"; transcript_id "ERVL_1p36.22b"; locus "ERVL_1p36.22b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0004"; model_cov "694"; model_pct "12.1"; chr1 rmsk exon 9496729 9497380 2554 - . gene_id "ERVL_1p36.22b"; transcript_id "ERVL_1p36.22b"; locus "ERVL_1p36.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0004"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2063"; repStart "-3000"; ### HUERSP1_1p36.22 ### chr1 rmsk gene 10016592 10017954 . - . gene_id "HUERSP1_1p36.22"; transcript_id "HUERSP1_1p36.22"; locus "HUERSP1_1p36.22"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0001"; model_cov "740"; model_pct "11.8"; chr1 rmsk exon 10016592 10016818 4585 - . gene_id "HUERSP1_1p36.22"; transcript_id "HUERSP1_1p36.22"; locus "HUERSP1_1p36.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0001"; repClass "LTR"; repEnd "1931"; repFamily "ERV1"; repLeft "1716"; repStart "-4332"; chr1 rmsk exon 10017122 10017200 4585 - . gene_id "HUERSP1_1p36.22"; transcript_id "HUERSP1_1p36.22"; locus "HUERSP1_1p36.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0001"; repClass "LTR"; repEnd "1715"; repFamily "ERV1"; repLeft "1634"; repStart "-4548"; chr1 rmsk exon 10017495 10017954 4585 - . gene_id "HUERSP1_1p36.22"; transcript_id "HUERSP1_1p36.22"; locus "HUERSP1_1p36.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0001"; repClass "LTR"; repEnd "1633"; repFamily "ERV1"; repLeft "1189"; repStart "-4630"; ### ERVLE_1p36.22 ### chr1 rmsk gene 10140592 10141777 . - . gene_id "ERVLE_1p36.22"; transcript_id "ERVLE_1p36.22"; locus "ERVLE_1p36.22"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0015"; model_cov "694"; model_pct "12.2"; chr1 rmsk exon 10140592 10141108 1068 - . gene_id "ERVLE_1p36.22"; transcript_id "ERVLE_1p36.22"; locus "ERVLE_1p36.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0015"; repClass "LTR"; repEnd "1415"; repFamily "ERVL"; repLeft "914"; repStart "-4252"; chr1 rmsk exon 10141586 10141777 336 - . gene_id "ERVLE_1p36.22"; transcript_id "ERVLE_1p36.22"; locus "ERVLE_1p36.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0015"; repClass "LTR"; repEnd "889"; repFamily "ERVL"; repLeft "696"; repStart "-4778"; ### ERV316A3_1p36.22a ### chr1 rmsk gene 11378008 11383024 . + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0005"; model_cov "2465"; model_pct "47.2"; chr1 rmsk exon 11378008 11378141 520 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "-82"; repStart "224"; chr1 rmsk exon 11378248 11378439 428 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-4707"; repStart "309"; chr1 rmsk exon 11379412 11380224 3075 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "1134"; repFamily "ERVL"; repLeft "-4092"; repStart "276"; chr1 rmsk exon 11380523 11380936 3075 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "1555"; repFamily "ERVL"; repLeft "-3671"; repStart "1135"; chr1 rmsk exon 11381227 11381512 3075 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "1821"; repFamily "ERVL"; repLeft "-3405"; repStart "1556"; chr1 rmsk exon 11381976 11382446 1616 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "2645"; repFamily "ERVL"; repLeft "-2581"; repStart "2194"; chr1 rmsk exon 11382758 11383024 1616 + . gene_id "ERV316A3_1p36.22a"; transcript_id "ERV316A3_1p36.22a"; locus "ERV316A3_1p36.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0005"; repClass "LTR"; repEnd "2907"; repFamily "ERVL"; repLeft "-2319"; repStart "2646"; ### ERV316A3_1p36.22b ### chr1 rmsk gene 11383219 11385505 . + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0006"; model_cov "1506"; model_pct "28.8"; chr1 rmsk exon 11383219 11383272 252 + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0006"; repClass "LTR"; repEnd "2215"; repFamily "ERVL"; repLeft "-3011"; repStart "2162"; chr1 rmsk exon 11383562 11383581 252 + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0006"; repClass "LTR"; repEnd "2231"; repFamily "ERVL"; repLeft "-2995"; repStart "2216"; chr1 rmsk exon 11383693 11384191 1666 + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0006"; repClass "LTR"; repEnd "2846"; repFamily "ERVL"; repLeft "-2380"; repStart "2179"; chr1 rmsk exon 11384287 11385073 2282 + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0006"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4453"; chr1 rmsk exon 11385076 11385505 1706 + . gene_id "ERV316A3_1p36.22b"; transcript_id "ERV316A3_1p36.22b"; locus "ERV316A3_1p36.22b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0006"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "2"; ### HERVL_1p36.22 ### chr1 rmsk gene 12388951 12395953 . - . gene_id "HERVL_1p36.22"; transcript_id "HERVL_1p36.22"; locus "HERVL_1p36.22"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0004"; model_cov "5600"; model_pct "99.0"; chr1 rmsk exon 12388951 12389357 3060 - . gene_id "HERVL_1p36.22"; transcript_id "HERVL_1p36.22"; locus "HERVL_1p36.22"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0004"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr1 rmsk exon 12389383 12391577 17822 - . gene_id "HERVL_1p36.22"; transcript_id "HERVL_1p36.22"; locus "HERVL_1p36.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0004"; repClass "LTR"; repEnd "5585"; repFamily "ERVL"; repLeft "3388"; repStart "-69"; chr1 rmsk exon 12392564 12395953 27435 - . gene_id "HERVL_1p36.22"; transcript_id "HERVL_1p36.22"; locus "HERVL_1p36.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0004"; repClass "LTR"; repEnd "3404"; repFamily "ERVL"; repLeft "1"; repStart "-2250"; ### ERVLE_1p36.21a ### chr1 rmsk gene 12669213 12670382 . + . gene_id "ERVLE_1p36.21a"; transcript_id "ERVLE_1p36.21a"; locus "ERVLE_1p36.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0016"; model_cov "1195"; model_pct "21.1"; chr1 rmsk exon 12669213 12670382 3603 + . gene_id "ERVLE_1p36.21a"; transcript_id "ERVLE_1p36.21a"; locus "ERVLE_1p36.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0016"; repClass "LTR"; repEnd "3068"; repFamily "ERVL"; repLeft "-2599"; repStart "1873"; ### ERVLE_1p36.21b ### chr1 rmsk gene 12674390 12677130 . - . gene_id "ERVLE_1p36.21b"; transcript_id "ERVLE_1p36.21b"; locus "ERVLE_1p36.21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0017"; model_cov "1637"; model_pct "28.9"; chr1 rmsk exon 12674390 12675590 3616 - . gene_id "ERVLE_1p36.21b"; transcript_id "ERVLE_1p36.21b"; locus "ERVLE_1p36.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0017"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "1495"; repStart "-2951"; chr1 rmsk exon 12675938 12676020 862 - . gene_id "ERVLE_1p36.21b"; transcript_id "ERVLE_1p36.21b"; locus "ERVLE_1p36.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0017"; repClass "LTR"; repEnd "1488"; repFamily "ERVL"; repLeft "1411"; repStart "-4179"; chr1 rmsk exon 12676466 12676557 862 - . gene_id "ERVLE_1p36.21b"; transcript_id "ERVLE_1p36.21b"; locus "ERVLE_1p36.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0017"; repClass "LTR"; repEnd "1410"; repFamily "ERVL"; repLeft "1323"; repStart "-4257"; chr1 rmsk exon 12676872 12677130 862 - . gene_id "ERVLE_1p36.21b"; transcript_id "ERVLE_1p36.21b"; locus "ERVLE_1p36.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0017"; repClass "LTR"; repEnd "1322"; repFamily "ERVL"; repLeft "1070"; repStart "-4345"; ### HERVIP10F_1p36.21 ### chr1 rmsk gene 12703944 12713280 . - . gene_id "HERVIP10F_1p36.21"; transcript_id "HERVIP10F_1p36.21"; locus "HERVIP10F_1p36.21"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0003"; model_cov "7723"; model_pct "99.8"; chr1 rmsk exon 12703944 12704434 3336 - . gene_id "HERVIP10F_1p36.21"; transcript_id "HERVIP10F_1p36.21"; locus "HERVIP10F_1p36.21"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0003"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 12704435 12705235 61496 - . gene_id "HERVIP10F_1p36.21"; transcript_id "HERVIP10F_1p36.21"; locus "HERVIP10F_1p36.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0003"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "6944"; repStart "0"; chr1 rmsk exon 12706104 12707851 61496 - . gene_id "HERVIP10F_1p36.21"; transcript_id "HERVIP10F_1p36.21"; locus "HERVIP10F_1p36.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0003"; repClass "LTR"; repEnd "6943"; repFamily "ERV1"; repLeft "5193"; repStart "-794"; chr1 rmsk exon 12708146 12713280 61496 - . gene_id "HERVIP10F_1p36.21"; transcript_id "HERVIP10F_1p36.21"; locus "HERVIP10F_1p36.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0003"; repClass "LTR"; repEnd "5192"; repFamily "ERV1"; repLeft "12"; repStart "-2545"; ### HML2_1p36.21a ### chr1 rmsk gene 12780115 12785935 . - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0001"; model_cov "4813"; model_pct "63.9"; chr1 rmsk exon 12780115 12784947 27645 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "4816"; repFamily "ERVK"; repLeft "3"; repStart "-2720"; chr1 rmsk exon 12784950 12785935 7601 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_1p36.21b ### chr1 rmsk gene 13012447 13021988 . - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0002"; model_cov "7448"; model_pct "98.8"; chr1 rmsk exon 13012447 13013444 8041 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 13013534 13020171 21384 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "743"; repStart "-89"; chr1 rmsk exon 13020264 13020996 4529 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "2"; repStart "-6790"; chr1 rmsk exon 13020998 13021988 7851 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV3_1p36.21a ### chr1 rmsk gene 13084708 13089947 . + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0001"; model_cov "4278"; model_pct "50.8"; chr1 rmsk exon 13084708 13084851 2499 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-473"; repStart "1"; chr1 rmsk exon 13084881 13085294 2499 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-1"; repStart "87"; chr1 rmsk exon 13085295 13085744 2194 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-8368"; repStart "-374"; chr1 rmsk exon 13085725 13086998 6732 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "-6781"; repStart "319"; chr1 rmsk exon 13087109 13089246 14870 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "-2564"; repStart "3701"; chr1 rmsk exon 13089564 13089947 14870 + . gene_id "HERV3_1p36.21a"; transcript_id "HERV3_1p36.21a"; locus "HERV3_1p36.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0001"; repClass "LTR"; repEnd "6222"; repFamily "ERV1"; repLeft "-2204"; repStart "5863"; ### HERV3_1p36.21b ### chr1 rmsk gene 13136842 13142081 . - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0002"; model_cov "4280"; model_pct "50.8"; chr1 rmsk exon 13136842 13137225 14882 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "6224"; repFamily "ERV1"; repLeft "5863"; repStart "-2202"; chr1 rmsk exon 13137543 13139680 14882 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "3701"; repStart "-2564"; chr1 rmsk exon 13139791 13141064 6732 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "319"; repStart "-6781"; chr1 rmsk exon 13141045 13141494 2194 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-374"; repStart "-8368"; chr1 rmsk exon 13141495 13141908 2499 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "87"; repStart "-1"; chr1 rmsk exon 13141938 13142081 2499 - . gene_id "HERV3_1p36.21b"; transcript_id "HERV3_1p36.21b"; locus "HERV3_1p36.21b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0002"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "1"; repStart "-473"; ### HML2_1p36.21c ### chr1 rmsk gene 13206972 13216513 . + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0003"; model_cov "7448"; model_pct "98.8"; chr1 rmsk exon 13206972 13207962 7851 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 13207964 13208696 4529 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2"; chr1 rmsk exon 13208789 13215426 21447 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1 rmsk exon 13215516 13216513 7965 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_1p36.21d ### chr1 rmsk gene 13352736 13362257 . + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0004"; model_cov "7449"; model_pct "98.8"; chr1 rmsk exon 13352736 13353726 7746 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 13353727 13354460 4505 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr1 rmsk exon 13354553 13361170 21857 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1 rmsk exon 13361260 13362257 8099 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVIP10FH_1p36.21a ### chr1 rmsk gene 13559651 13560780 . + . gene_id "HERVIP10FH_1p36.21a"; transcript_id "HERVIP10FH_1p36.21a"; locus "HERVIP10FH_1p36.21a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0003"; model_cov "583"; model_pct "11.4"; chr1 rmsk exon 13559651 13560150 3098 + . gene_id "HERVIP10FH_1p36.21a"; transcript_id "HERVIP10FH_1p36.21a"; locus "HERVIP10FH_1p36.21a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0003"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 13560151 13560780 2024 + . gene_id "HERVIP10FH_1p36.21a"; transcript_id "HERVIP10FH_1p36.21a"; locus "HERVIP10FH_1p36.21a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0003"; repClass "LTR"; repEnd "-1917"; repFamily "ERV1"; repLeft "-7019"; repStart "-2500"; ### HERVH_1p36.21 ### chr1 rmsk gene 13560841 13567494 . + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0006"; model_cov "5700"; model_pct "73.9"; chr1 rmsk exon 13560841 13561228 2754 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 13561229 13561744 1197 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "-7191"; repStart "1"; chr1 rmsk exon 13561715 13564107 8148 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "590"; chr1 rmsk exon 13564108 13564912 4231 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "4094"; repFamily "ERV1"; repLeft "-3619"; repStart "3357"; chr1 rmsk exon 13564902 13566541 12202 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "4370"; chr1 rmsk exon 13566535 13567107 3373 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 13567108 13567494 2620 + . gene_id "HERVH_1p36.21"; transcript_id "HERVH_1p36.21"; locus "HERVH_1p36.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0006"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_1p36.21b ### chr1 rmsk gene 13567557 13573195 . + . gene_id "HERVIP10FH_1p36.21b"; transcript_id "HERVIP10FH_1p36.21b"; locus "HERVIP10FH_1p36.21b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0004"; model_cov "4811"; model_pct "94.3"; chr1 rmsk exon 13567557 13568027 584 + . gene_id "HERVIP10FH_1p36.21b"; transcript_id "HERVIP10FH_1p36.21b"; locus "HERVIP10FH_1p36.21b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0004"; repClass "LTR"; repEnd "1011"; repFamily "ERV1"; repLeft "-4091"; repStart "565"; chr1 rmsk exon 13568060 13568521 32486 + . gene_id "HERVIP10FH_1p36.21b"; transcript_id "HERVIP10FH_1p36.21b"; locus "HERVIP10FH_1p36.21b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0004"; repClass "LTR"; repEnd "1197"; repFamily "ERV1"; repLeft "-3905"; repStart "736"; chr1 rmsk exon 13568811 13572722 32486 + . gene_id "HERVIP10FH_1p36.21b"; transcript_id "HERVIP10FH_1p36.21b"; locus "HERVIP10FH_1p36.21b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0004"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "1198"; chr1 rmsk exon 13572723 13573195 3388 + . gene_id "HERVIP10FH_1p36.21b"; transcript_id "HERVIP10FH_1p36.21b"; locus "HERVIP10FH_1p36.21b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0004"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p36.13a ### chr1 rmsk gene 15982682 15983526 . + . gene_id "ERVLE_1p36.13a"; transcript_id "ERVLE_1p36.13a"; locus "ERVLE_1p36.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0018"; model_cov "886"; model_pct "15.6"; chr1 rmsk exon 15982682 15983526 1169 + . gene_id "ERVLE_1p36.13a"; transcript_id "ERVLE_1p36.13a"; locus "ERVLE_1p36.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0018"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "-4499"; repStart "282"; ### HML3_1p36.13a ### chr1 rmsk gene 16102814 16108812 . - . gene_id "HML3_1p36.13a"; transcript_id "HML3_1p36.13a"; locus "HML3_1p36.13a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0004"; model_cov "5098"; model_pct "84.7"; chr1 rmsk exon 16102814 16103328 4412 - . gene_id "HML3_1p36.13a"; transcript_id "HML3_1p36.13a"; locus "HML3_1p36.13a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0004"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 16103329 16105518 14620 - . gene_id "HML3_1p36.13a"; transcript_id "HML3_1p36.13a"; locus "HML3_1p36.13a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0004"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3720"; repStart "0"; chr1 rmsk exon 16105517 16108299 21057 - . gene_id "HML3_1p36.13a"; transcript_id "HML3_1p36.13a"; locus "HML3_1p36.13a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0004"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr1 rmsk exon 16108300 16108812 4364 - . gene_id "HML3_1p36.13a"; transcript_id "HML3_1p36.13a"; locus "HML3_1p36.13a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0004"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### PRIMA41_1p36.13a ### chr1 rmsk gene 16529151 16531095 . - . gene_id "PRIMA41_1p36.13a"; transcript_id "PRIMA41_1p36.13a"; locus "PRIMA41_1p36.13a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0001"; model_cov "1626"; model_pct "21.0"; chr1 rmsk exon 16529151 16530064 2695 - . gene_id "PRIMA41_1p36.13a"; transcript_id "PRIMA41_1p36.13a"; locus "PRIMA41_1p36.13a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0001"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "4755"; repStart "-2057"; chr1 rmsk exon 16530372 16531095 2695 - . gene_id "PRIMA41_1p36.13a"; transcript_id "PRIMA41_1p36.13a"; locus "PRIMA41_1p36.13a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0001"; repClass "LTR"; repEnd "4754"; repFamily "ERV1"; repLeft "4072"; repStart "-3002"; ### ERVLE_1p36.13b ### chr1 rmsk gene 16602708 16603314 . - . gene_id "ERVLE_1p36.13b"; transcript_id "ERVLE_1p36.13b"; locus "ERVLE_1p36.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0019"; model_cov "600"; model_pct "10.6"; chr1 rmsk exon 16602708 16603074 772 - . gene_id "ERVLE_1p36.13b"; transcript_id "ERVLE_1p36.13b"; locus "ERVLE_1p36.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0019"; repClass "LTR"; repEnd "1897"; repFamily "ERVL"; repLeft "1518"; repStart "-3770"; chr1 rmsk exon 16603092 16603314 607 - . gene_id "ERVLE_1p36.13b"; transcript_id "ERVLE_1p36.13b"; locus "ERVLE_1p36.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0019"; repClass "LTR"; repEnd "1462"; repFamily "ERVL"; repLeft "1241"; repStart "-4205"; ### PRIMA41_1p36.13b ### chr1 rmsk gene 16670469 16671381 . - . gene_id "PRIMA41_1p36.13b"; transcript_id "PRIMA41_1p36.13b"; locus "PRIMA41_1p36.13b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0002"; model_cov "949"; model_pct "12.2"; chr1 rmsk exon 16670469 16671381 1726 - . gene_id "PRIMA41_1p36.13b"; transcript_id "PRIMA41_1p36.13b"; locus "PRIMA41_1p36.13b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0002"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "4750"; repStart "-2057"; ### PRIMA41_1p36.13c ### chr1 rmsk gene 16736083 16736995 . + . gene_id "PRIMA41_1p36.13c"; transcript_id "PRIMA41_1p36.13c"; locus "PRIMA41_1p36.13c"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0003"; model_cov "949"; model_pct "12.2"; chr1 rmsk exon 16736083 16736995 1678 + . gene_id "PRIMA41_1p36.13c"; transcript_id "PRIMA41_1p36.13c"; locus "PRIMA41_1p36.13c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0003"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "-2057"; repStart "4750"; ### PRIMA41_1p36.13d ### chr1 rmsk gene 16876821 16878758 . + . gene_id "PRIMA41_1p36.13d"; transcript_id "PRIMA41_1p36.13d"; locus "PRIMA41_1p36.13d"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0004"; model_cov "1626"; model_pct "21.0"; chr1 rmsk exon 16876821 16877538 2769 + . gene_id "PRIMA41_1p36.13d"; transcript_id "PRIMA41_1p36.13d"; locus "PRIMA41_1p36.13d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0004"; repClass "LTR"; repEnd "4754"; repFamily "ERV1"; repLeft "-3002"; repStart "4072"; chr1 rmsk exon 16877845 16878758 2769 + . gene_id "PRIMA41_1p36.13d"; transcript_id "PRIMA41_1p36.13d"; locus "PRIMA41_1p36.13d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0004"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "-2057"; repStart "4755"; ### MER61_1p36.13 ### chr1 rmsk gene 17491933 17493205 . + . gene_id "MER61_1p36.13"; transcript_id "MER61_1p36.13"; locus "MER61_1p36.13"; category "internal"; intModel "MER61-int"; locid "MER61-int_0001"; model_cov "915"; model_pct "17.5"; chr1 rmsk exon 17491933 17492128 1949 + . gene_id "MER61_1p36.13"; transcript_id "MER61_1p36.13"; locus "MER61_1p36.13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0001"; repClass "LTR"; repEnd "1914"; repFamily "ERV1"; repLeft "-3303"; repStart "1719"; chr1 rmsk exon 17492406 17492870 1949 + . gene_id "MER61_1p36.13"; transcript_id "MER61_1p36.13"; locus "MER61_1p36.13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0001"; repClass "LTR"; repEnd "2497"; repFamily "ERV1"; repLeft "-2720"; repStart "1915"; chr1 rmsk exon 17493067 17493205 864 + . gene_id "MER61_1p36.13"; transcript_id "MER61_1p36.13"; locus "MER61_1p36.13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0001"; repClass "LTR"; repEnd "2639"; repFamily "ERV1"; repLeft "-2578"; repStart "2501"; ### ERVLE_1p36.13c ### chr1 rmsk gene 17757179 17758849 . + . gene_id "ERVLE_1p36.13c"; transcript_id "ERVLE_1p36.13c"; locus "ERVLE_1p36.13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0020"; model_cov "1360"; model_pct "24.0"; chr1 rmsk exon 17757179 17757361 452 + . gene_id "ERVLE_1p36.13c"; transcript_id "ERVLE_1p36.13c"; locus "ERVLE_1p36.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0020"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-5197"; repStart "288"; chr1 rmsk exon 17757725 17758849 3354 + . gene_id "ERVLE_1p36.13c"; transcript_id "ERVLE_1p36.13c"; locus "ERVLE_1p36.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0020"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "-3576"; repStart "913"; ### ERVLE_1p36.13d ### chr1 rmsk gene 17941282 17944864 . - . gene_id "ERVLE_1p36.13d"; transcript_id "ERVLE_1p36.13d"; locus "ERVLE_1p36.13d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0021"; model_cov "2895"; model_pct "51.1"; chr1 rmsk exon 17941282 17941925 1758 - . gene_id "ERVLE_1p36.13d"; transcript_id "ERVLE_1p36.13d"; locus "ERVLE_1p36.13d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0021"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "4"; repStart "-2"; chr1 rmsk exon 17941931 17944543 7539 - . gene_id "ERVLE_1p36.13d"; transcript_id "ERVLE_1p36.13d"; locus "ERVLE_1p36.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0021"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "3027"; repStart "-2"; chr1 rmsk exon 17944540 17944795 1322 - . gene_id "ERVLE_1p36.13d"; transcript_id "ERVLE_1p36.13d"; locus "ERVLE_1p36.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0021"; repClass "LTR"; repEnd "1230"; repFamily "ERVL"; repLeft "973"; repStart "-4437"; chr1 rmsk exon 17944818 17944864 277 - . gene_id "ERVLE_1p36.13d"; transcript_id "ERVLE_1p36.13d"; locus "ERVLE_1p36.13d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0021"; repClass "LTR"; repEnd "80"; repFamily "ERVL"; repLeft "33"; repStart "-548"; ### ERV316A3_1p36.13 ### chr1 rmsk gene 18843102 18846539 . + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0007"; model_cov "2550"; model_pct "48.8"; chr1 rmsk exon 18843102 18843683 1391 + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0007"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "-2544"; repStart "2106"; chr1 rmsk exon 18843819 18844470 2170 + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0007"; repClass "LTR"; repEnd "3842"; repFamily "ERVL"; repLeft "-1384"; repStart "3195"; chr1 rmsk exon 18844782 18845868 2170 + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0007"; repClass "LTR"; repEnd "4729"; repFamily "ERVL"; repLeft "-497"; repStart "3402"; chr1 rmsk exon 18846058 18846135 255 + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0007"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "-479"; repStart "12"; chr1 rmsk exon 18846226 18846539 891 + . gene_id "ERV316A3_1p36.13"; transcript_id "ERV316A3_1p36.13"; locus "ERV316A3_1p36.13"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0007"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "0"; repStart "249"; ### HUERSP3_1p36.13 ### chr1 rmsk gene 19294272 19296835 . - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0001"; model_cov "1623"; model_pct "18.2"; chr1 rmsk exon 19294272 19294461 1155 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "3784"; repFamily "ERV1"; repLeft "3601"; repStart "-5135"; chr1 rmsk exon 19294464 19295631 4620 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "3234"; repFamily "ERV1"; repLeft "2007"; repStart "-5685"; chr1 rmsk exon 19295641 19295844 961 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "1"; repStart "-8705"; chr1 rmsk exon 19295845 19295902 335 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "587"; repStart "0"; chr1 rmsk exon 19295903 19296217 3351 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "312"; repStart "0"; chr1 rmsk exon 19296532 19296835 3351 - . gene_id "HUERSP3_1p36.13"; transcript_id "HUERSP3_1p36.13"; locus "HUERSP3_1p36.13"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0001"; repClass "LTR"; repEnd "311"; repFamily "ERV1"; repLeft "18"; repStart "-334"; ### HML3_1p36.13b ### chr1 rmsk gene 19541477 19547695 . + . gene_id "HML3_1p36.13b"; transcript_id "HML3_1p36.13b"; locus "HML3_1p36.13b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0005"; model_cov "5290"; model_pct "87.9"; chr1 rmsk exon 19541477 19541984 4072 + . gene_id "HML3_1p36.13b"; transcript_id "HML3_1p36.13b"; locus "HML3_1p36.13b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0005"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 19541985 19542507 3471 + . gene_id "HML3_1p36.13b"; transcript_id "HML3_1p36.13b"; locus "HML3_1p36.13b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0005"; repClass "LTR"; repEnd "619"; repFamily "ERVK"; repLeft "-5402"; repStart "1"; chr1 rmsk exon 19542502 19547188 38123 + . gene_id "HML3_1p36.13b"; transcript_id "HML3_1p36.13b"; locus "HML3_1p36.13b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0005"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1349"; chr1 rmsk exon 19547189 19547695 3782 + . gene_id "HML3_1p36.13b"; transcript_id "HML3_1p36.13b"; locus "HML3_1p36.13b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0005"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### HUERSP1_1p36.13 ### chr1 rmsk gene 19847836 19850962 . - . gene_id "HUERSP1_1p36.13"; transcript_id "HUERSP1_1p36.13"; locus "HUERSP1_1p36.13"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0002"; model_cov "2991"; model_pct "47.8"; chr1 rmsk exon 19847836 19848798 9025 - . gene_id "HUERSP1_1p36.13"; transcript_id "HUERSP1_1p36.13"; locus "HUERSP1_1p36.13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0002"; repClass "LTR"; repEnd "3195"; repFamily "ERV1"; repLeft "2205"; repStart "-3068"; chr1 rmsk exon 19849114 19849365 9025 - . gene_id "HUERSP1_1p36.13"; transcript_id "HUERSP1_1p36.13"; locus "HUERSP1_1p36.13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0002"; repClass "LTR"; repEnd "2204"; repFamily "ERV1"; repLeft "1951"; repStart "-4059"; chr1 rmsk exon 19849350 19850962 8358 - . gene_id "HUERSP1_1p36.13"; transcript_id "HUERSP1_1p36.13"; locus "HUERSP1_1p36.13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0002"; repClass "LTR"; repEnd "2092"; repFamily "ERV1"; repLeft "344"; repStart "-4171"; ### HERVK14C_1p36.13 ### chr1 rmsk gene 19927433 19932159 . - . gene_id "HERVK14C_1p36.13"; transcript_id "HERVK14C_1p36.13"; locus "HERVK14C_1p36.13"; category "internal"; intModel "HERVK14C-int"; locid "HERVK14C-int_0001"; model_cov "4914"; model_pct "66.1"; chr1 rmsk exon 19927433 19930516 11969 - . gene_id "HERVK14C_1p36.13"; transcript_id "HERVK14C_1p36.13"; locus "HERVK14C_1p36.13"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0001"; repClass "LTR"; repEnd "7409"; repFamily "ERVK"; repLeft "4275"; repStart "-25"; chr1 rmsk exon 19930517 19932159 5268 - . gene_id "HERVK14C_1p36.13"; transcript_id "HERVK14C_1p36.13"; locus "HERVK14C_1p36.13"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0001"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "1"; repStart "-5653"; ### ERVLE_1p36.13e ### chr1 rmsk gene 19941747 19942317 . + . gene_id "ERVLE_1p36.13e"; transcript_id "ERVLE_1p36.13e"; locus "ERVLE_1p36.13e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0022"; model_cov "579"; model_pct "10.2"; chr1 rmsk exon 19941747 19942317 670 + . gene_id "ERVLE_1p36.13e"; transcript_id "ERVLE_1p36.13e"; locus "ERVLE_1p36.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0022"; repClass "LTR"; repEnd "1480"; repFamily "ERVL"; repLeft "-4187"; repStart "901"; ### HML3_1p36.13c ### chr1 rmsk gene 19997411 20003727 . + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0006"; model_cov "5343"; model_pct "88.7"; chr1 rmsk exon 19997411 19997923 4385 + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0006"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 19997924 19998514 4969 + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0006"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr1 rmsk exon 19998515 20000000 12425 + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0006"; repClass "LTR"; repEnd "2767"; repFamily "ERVK"; repLeft "-3254"; repStart "1280"; chr1 rmsk exon 20000001 20003214 24634 + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0006"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "2768"; chr1 rmsk exon 20003219 20003727 4212 + . gene_id "HML3_1p36.13c"; transcript_id "HML3_1p36.13c"; locus "HML3_1p36.13c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0006"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "5"; ### LTR46_1p36.13 ### chr1 rmsk gene 20028127 20035516 . - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0001"; model_cov "4845"; model_pct "69.4"; chr1 rmsk exon 20028127 20028464 1250 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "393"; repFamily "ERV1"; repLeft "5"; repStart "-67"; chr1 rmsk exon 20028465 20028814 4830 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6639"; repStart "0"; chr1 rmsk exon 20029713 20030027 4830 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "6327"; repStart "-347"; chr1 rmsk exon 20031016 20031187 4830 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "6326"; repFamily "ERV1"; repLeft "6157"; repStart "-659"; chr1 rmsk exon 20031176 20034775 23057 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "5933"; repFamily "ERV1"; repLeft "2366"; repStart "-1052"; chr1 rmsk exon 20034773 20035106 1150 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "1"; repStart "-6532"; chr1 rmsk exon 20035108 20035516 2041 - . gene_id "LTR46_1p36.13"; transcript_id "LTR46_1p36.13"; locus "LTR46_1p36.13"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0001"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_1p36.13 ### chr1 rmsk gene 20041281 20045782 . - . gene_id "HERVH_1p36.13"; transcript_id "HERVH_1p36.13"; locus "HERVH_1p36.13"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0007"; model_cov "4837"; model_pct "62.7"; chr1 rmsk exon 20041281 20041436 985 - . gene_id "HERVH_1p36.13"; transcript_id "HERVH_1p36.13"; locus "HERVH_1p36.13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0007"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "292"; repStart "0"; chr1 rmsk exon 20041447 20042413 4825 - . gene_id "HERVH_1p36.13"; transcript_id "HERVH_1p36.13"; locus "HERVH_1p36.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0007"; repClass "LTR"; repEnd "6116"; repFamily "ERV1"; repLeft "4865"; repStart "-1597"; chr1 rmsk exon 20042408 20045782 15741 - . gene_id "HERVH_1p36.13"; transcript_id "HERVH_1p36.13"; locus "HERVH_1p36.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0007"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "1"; repStart "-4126"; ### MER4_1p36.13 ### chr1 rmsk gene 20046813 20053194 . + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0003"; model_cov "5382"; model_pct "81.6"; chr1 rmsk exon 20046813 20047718 5654 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "-5609"; repStart "34"; chr1 rmsk exon 20047786 20048513 3865 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr1 rmsk exon 20048755 20049450 4092 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "3470"; repFamily "ERV1"; repLeft "-3128"; repStart "2737"; chr1 rmsk exon 20049809 20050010 4092 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "3471"; chr1 rmsk exon 20050015 20052119 14697 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "6048"; repFamily "ERV1"; repLeft "-550"; repStart "3840"; chr1 rmsk exon 20052196 20052716 14697 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0003"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6049"; chr1 rmsk exon 20052724 20053194 3301 + . gene_id "MER4_1p36.13"; transcript_id "MER4_1p36.13"; locus "MER4_1p36.13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0003"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p36.13f ### chr1 rmsk gene 20094082 20097380 . + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0023"; model_cov "1989"; model_pct "35.1"; chr1 rmsk exon 20094082 20094704 1345 + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0023"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "-11"; repStart "1"; chr1 rmsk exon 20094722 20095038 884 + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0023"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-5310"; repStart "5"; chr1 rmsk exon 20095194 20096476 4626 + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0023"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "-2015"; repStart "2303"; chr1 rmsk exon 20096488 20096749 1079 + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0023"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5379"; chr1 rmsk exon 20096756 20097380 1329 + . gene_id "ERVLE_1p36.13f"; transcript_id "ERVLE_1p36.13f"; locus "ERVLE_1p36.13f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0023"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### HERVE_1p36.12 ### chr1 rmsk gene 20154110 20160610 . + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0003"; model_cov "5830"; model_pct "74.6"; chr1 rmsk exon 20154110 20154320 1118 + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0003"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-1"; repStart "292"; chr1 rmsk exon 20154322 20156816 14000 + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0003"; repClass "LTR"; repEnd "2512"; repFamily "ERV1"; repLeft "-5301"; repStart "1"; chr1 rmsk exon 20156817 20160102 21115 + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0003"; repClass "LTR"; repEnd "6005"; repFamily "ERV1"; repLeft "-1808"; repStart "2686"; chr1 rmsk exon 20160392 20160513 820 + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0003"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "-66"; repStart "315"; chr1 rmsk exon 20160506 20160610 579 + . gene_id "HERVE_1p36.12"; transcript_id "HERVE_1p36.12"; locus "HERVE_1p36.12"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0003"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "396"; ### HUERSP1_1p36.12 ### chr1 rmsk gene 20515729 20519665 . + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0003"; model_cov "2123"; model_pct "33.9"; chr1 rmsk exon 20515729 20515882 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-3895"; repStart "2210"; chr1 rmsk exon 20516191 20516512 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "2693"; repFamily "ERV1"; repLeft "-3570"; repStart "2369"; chr1 rmsk exon 20516798 20516834 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "2694"; repFamily "ERV1"; repLeft "-3569"; repStart "2694"; chr1 rmsk exon 20517147 20517927 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "3508"; repFamily "ERV1"; repLeft "-2755"; repStart "2694"; chr1 rmsk exon 20518214 20518407 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "3657"; repFamily "ERV1"; repLeft "-2606"; repStart "3509"; chr1 rmsk exon 20518996 20519665 14176 + . gene_id "HUERSP1_1p36.12"; transcript_id "HUERSP1_1p36.12"; locus "HUERSP1_1p36.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0003"; repClass "LTR"; repEnd "4337"; repFamily "ERV1"; repLeft "-1926"; repStart "3658"; ### ERVLB4_1p36.12a ### chr1 rmsk gene 21205115 21206755 . + . gene_id "ERVLB4_1p36.12a"; transcript_id "ERVLB4_1p36.12a"; locus "ERVLB4_1p36.12a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0006"; model_cov "882"; model_pct "15.4"; chr1 rmsk exon 21205115 21205180 1992 + . gene_id "ERVLB4_1p36.12a"; transcript_id "ERVLB4_1p36.12a"; locus "ERVLB4_1p36.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0006"; repClass "LTR"; repEnd "1128"; repFamily "ERVL"; repLeft "-4586"; repStart "1061"; chr1 rmsk exon 21205518 21205779 1992 + . gene_id "ERVLB4_1p36.12a"; transcript_id "ERVLB4_1p36.12a"; locus "ERVLB4_1p36.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0006"; repClass "LTR"; repEnd "1408"; repFamily "ERVL"; repLeft "-4306"; repStart "1148"; chr1 rmsk exon 21206095 21206340 1992 + . gene_id "ERVLB4_1p36.12a"; transcript_id "ERVLB4_1p36.12a"; locus "ERVLB4_1p36.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0006"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "-4071"; repStart "1409"; chr1 rmsk exon 21206446 21206755 1896 + . gene_id "ERVLB4_1p36.12a"; transcript_id "ERVLB4_1p36.12a"; locus "ERVLB4_1p36.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0006"; repClass "LTR"; repEnd "2654"; repFamily "ERVL"; repLeft "-3060"; repStart "2333"; ### ERVLB4_1p36.12b ### chr1 rmsk gene 21207724 21213077 . + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0007"; model_cov "2594"; model_pct "45.4"; chr1 rmsk exon 21207724 21208699 5664 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "-3067"; repStart "1635"; chr1 rmsk exon 21209464 21209707 1844 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "2891"; repFamily "ERVL"; repLeft "-2823"; repStart "2666"; chr1 rmsk exon 21209959 21210128 1844 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "-2656"; repStart "2892"; chr1 rmsk exon 21210178 21210417 1565 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "-2431"; repStart "3041"; chr1 rmsk exon 21210780 21210838 4691 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "4773"; repFamily "ERVL"; repLeft "-941"; repStart "4729"; chr1 rmsk exon 21211134 21211462 4691 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "-611"; repStart "4774"; chr1 rmsk exon 21212222 21212574 4691 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "5481"; repFamily "ERVL"; repLeft "-233"; repStart "5104"; chr1 rmsk exon 21212882 21213077 4691 + . gene_id "ERVLB4_1p36.12b"; transcript_id "ERVLB4_1p36.12b"; locus "ERVLB4_1p36.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0007"; repClass "LTR"; repEnd "5681"; repFamily "ERVL"; repLeft "-33"; repStart "5482"; ### MER41_1p36.12 ### chr1 rmsk gene 21389817 21402446 . + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0001"; model_cov "5742"; model_pct "96.6"; chr1 rmsk exon 21389817 21390167 2743 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0001"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "-69"; repStart "216"; chr1 rmsk exon 21390471 21390541 2743 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0001"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "566"; chr1 rmsk exon 21390542 21390865 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-5629"; repStart "1"; chr1 rmsk exon 21391000 21391824 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "1148"; repFamily "ERV1"; repLeft "-4798"; repStart "318"; chr1 rmsk exon 21392107 21392490 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "1486"; repFamily "ERV1"; repLeft "-4460"; repStart "1149"; chr1 rmsk exon 21392882 21393020 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "1586"; repFamily "ERV1"; repLeft "-4360"; repStart "1487"; chr1 rmsk exon 21393320 21393876 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "2150"; repFamily "ERV1"; repLeft "-3796"; repStart "1587"; chr1 rmsk exon 21394184 21394695 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-3288"; repStart "2151"; chr1 rmsk exon 21395008 21395046 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "-3221"; repStart "2659"; chr1 rmsk exon 21395354 21395943 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "3342"; repFamily "ERV1"; repLeft "-2604"; repStart "2726"; chr1 rmsk exon 21396255 21396460 15649 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "3497"; repFamily "ERV1"; repLeft "-2449"; repStart "3343"; chr1 rmsk exon 21397071 21397160 2028 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "3765"; repFamily "ERV1"; repLeft "-2181"; repStart "3706"; chr1 rmsk exon 21397435 21397811 2028 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "4138"; repFamily "ERV1"; repLeft "-1808"; repStart "3766"; chr1 rmsk exon 21399385 21399897 11810 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-1276"; repStart "4120"; chr1 rmsk exon 21400202 21401477 11810 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0001"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4671"; chr1 rmsk exon 21401481 21401548 4459 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0001"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "-575"; repStart "1"; chr1 rmsk exon 21401878 21402446 4459 + . gene_id "MER41_1p36.12"; transcript_id "MER41_1p36.12"; locus "MER41_1p36.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0001"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-1"; repStart "60"; ### ERVLE_1p36.12 ### chr1 rmsk gene 21453383 21453988 . + . gene_id "ERVLE_1p36.12"; transcript_id "ERVLE_1p36.12"; locus "ERVLE_1p36.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0026"; model_cov "600"; model_pct "10.6"; chr1 rmsk exon 21453383 21453605 519 + . gene_id "ERVLE_1p36.12"; transcript_id "ERVLE_1p36.12"; locus "ERVLE_1p36.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0026"; repClass "LTR"; repEnd "1462"; repFamily "ERVL"; repLeft "-4205"; repStart "1241"; chr1 rmsk exon 21453623 21453988 825 + . gene_id "ERVLE_1p36.12"; transcript_id "ERVLE_1p36.12"; locus "ERVLE_1p36.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0026"; repClass "LTR"; repEnd "1897"; repFamily "ERVL"; repLeft "-3770"; repStart "1518"; ### PABLB_1p36.12 ### chr1 rmsk gene 22944027 22944895 . + . gene_id "PABLB_1p36.12"; transcript_id "PABLB_1p36.12"; locus "PABLB_1p36.12"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0001"; model_cov "1068"; model_pct "15.0"; chr1 rmsk exon 22944027 22944895 851 + . gene_id "PABLB_1p36.12"; transcript_id "PABLB_1p36.12"; locus "PABLB_1p36.12"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0001"; repClass "LTR"; repEnd "3388"; repFamily "ERV1"; repLeft "-3734"; repStart "2320"; ### MER4_1p36.12a ### chr1 rmsk gene 22987775 22989766 . + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0004"; model_cov "1099"; model_pct "16.7"; chr1 rmsk exon 22987775 22988400 3926 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0004"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 22988404 22988539 801 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0004"; repClass "LTR"; repEnd "163"; repFamily "ERV1"; repLeft "-6435"; repStart "1"; chr1 rmsk exon 22988615 22988806 1562 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0004"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "-6161"; repStart "238"; chr1 rmsk exon 22988833 22988875 1562 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0004"; repClass "LTR"; repEnd "512"; repFamily "ERV1"; repLeft "-6086"; repStart "438"; chr1 rmsk exon 22989182 22989388 1562 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0004"; repClass "LTR"; repEnd "827"; repFamily "ERV1"; repLeft "-5771"; repStart "513"; chr1 rmsk exon 22989410 22989766 1423 + . gene_id "MER4_1p36.12a"; transcript_id "MER4_1p36.12a"; locus "MER4_1p36.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0004"; repClass "LTR"; repEnd "2467"; repFamily "ERV1"; repLeft "-4131"; repStart "2117"; ### MER4_1p36.12b ### chr1 rmsk gene 22989788 22997502 . + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0005"; model_cov "4794"; model_pct "72.7"; chr1 rmsk exon 22989788 22990127 10153 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "369"; repFamily "ERV1"; repLeft "-6229"; repStart "35"; chr1 rmsk exon 22990435 22990649 10153 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "-6023"; repStart "370"; chr1 rmsk exon 22990949 22991587 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "2260"; repFamily "ERV1"; repLeft "-4338"; repStart "2210"; chr1 rmsk exon 22991923 22991971 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "2284"; repFamily "ERV1"; repLeft "-4314"; repStart "2261"; chr1 rmsk exon 22992278 22992637 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "-3792"; repStart "2285"; chr1 rmsk exon 22992941 22993474 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "3365"; repFamily "ERV1"; repLeft "-3233"; repStart "2807"; chr1 rmsk exon 22993731 22994471 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "4004"; repFamily "ERV1"; repLeft "-2594"; repStart "3366"; chr1 rmsk exon 22994766 22996309 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "5599"; repFamily "ERV1"; repLeft "-999"; repStart "4005"; chr1 rmsk exon 22996620 22997502 19384 + . gene_id "MER4_1p36.12b"; transcript_id "MER4_1p36.12b"; locus "MER4_1p36.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0005"; repClass "LTR"; repEnd "6471"; repFamily "ERV1"; repLeft "-127"; repStart "5600"; ### HERVH_1p36.12 ### chr1 rmsk gene 22997505 23004403 . - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0008"; model_cov "6229"; model_pct "80.8"; chr1 rmsk exon 22997505 22997912 2227 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 22997913 22998471 3079 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr1 rmsk exon 22998465 23000000 7721 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "4435"; repStart "-1697"; chr1 rmsk exon 23000001 23000667 2547 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "5660"; repFamily "ERV1"; repLeft "4872"; repStart "-2053"; chr1 rmsk exon 23000670 23003523 17786 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "3585"; repFamily "ERV1"; repLeft "773"; repStart "-4128"; chr1 rmsk exon 23003541 23003991 1940 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "494"; repFamily "ERV1"; repLeft "2"; repStart "-7219"; chr1 rmsk exon 23003996 23004403 2392 - . gene_id "HERVH_1p36.12"; transcript_id "HERVH_1p36.12"; locus "HERVH_1p36.12"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0008"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_1p36.11 ### chr1 rmsk gene 24888544 24893132 . - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0008"; model_cov "1117"; model_pct "19.5"; chr1 rmsk exon 24888544 24888768 1354 - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0008"; repClass "LTR"; repEnd "3647"; repFamily "ERVL"; repLeft "3458"; repStart "-2067"; chr1 rmsk exon 24889258 24889704 1354 - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0008"; repClass "LTR"; repEnd "3457"; repFamily "ERVL"; repLeft "2972"; repStart "-2257"; chr1 rmsk exon 24890139 24890287 503 - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0008"; repClass "LTR"; repEnd "2927"; repFamily "ERVL"; repLeft "2782"; repStart "-2787"; chr1 rmsk exon 24890590 24890639 503 - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0008"; repClass "LTR"; repEnd "2781"; repFamily "ERVL"; repLeft "2731"; repStart "-2933"; chr1 rmsk exon 24892897 24893132 632 - . gene_id "ERVLB4_1p36.11"; transcript_id "ERVLB4_1p36.11"; locus "ERVLB4_1p36.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0008"; repClass "LTR"; repEnd "2644"; repFamily "ERVL"; repLeft "2396"; repStart "-3070"; ### ERV316A3_1p36.11a ### chr1 rmsk gene 25121778 25123964 . - . gene_id "ERV316A3_1p36.11a"; transcript_id "ERV316A3_1p36.11a"; locus "ERV316A3_1p36.11a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0009"; model_cov "1077"; model_pct "20.6"; chr1 rmsk exon 25121778 25122056 424 - . gene_id "ERV316A3_1p36.11a"; transcript_id "ERV316A3_1p36.11a"; locus "ERV316A3_1p36.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0009"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "2977"; repStart "-1896"; chr1 rmsk exon 25122714 25123124 792 - . gene_id "ERV316A3_1p36.11a"; transcript_id "ERV316A3_1p36.11a"; locus "ERV316A3_1p36.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0009"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "2617"; repStart "-2194"; chr1 rmsk exon 25123658 25123964 1264 - . gene_id "ERV316A3_1p36.11a"; transcript_id "ERV316A3_1p36.11a"; locus "ERV316A3_1p36.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0009"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "2643"; repStart "-2274"; ### ERV316A3_1p36.11b ### chr1 rmsk gene 26145639 26147087 . - . gene_id "ERV316A3_1p36.11b"; transcript_id "ERV316A3_1p36.11b"; locus "ERV316A3_1p36.11b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0010"; model_cov "711"; model_pct "13.6"; chr1 rmsk exon 26145639 26145852 470 - . gene_id "ERV316A3_1p36.11b"; transcript_id "ERV316A3_1p36.11b"; locus "ERV316A3_1p36.11b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0010"; repClass "LTR"; repEnd "288"; repFamily "ERVL"; repLeft "70"; repStart "-163"; chr1 rmsk exon 26145906 26146373 2486 - . gene_id "ERV316A3_1p36.11b"; transcript_id "ERV316A3_1p36.11b"; locus "ERV316A3_1p36.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0010"; repClass "LTR"; repEnd "5194"; repFamily "ERVL"; repLeft "4744"; repStart "-32"; chr1 rmsk exon 26146668 26146762 2486 - . gene_id "ERV316A3_1p36.11b"; transcript_id "ERV316A3_1p36.11b"; locus "ERV316A3_1p36.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0010"; repClass "LTR"; repEnd "4743"; repFamily "ERVL"; repLeft "4649"; repStart "-483"; chr1 rmsk exon 26146906 26147087 2486 - . gene_id "ERV316A3_1p36.11b"; transcript_id "ERV316A3_1p36.11b"; locus "ERV316A3_1p36.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0010"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "4481"; repStart "-578"; ### ERVLE_1p36.11a ### chr1 rmsk gene 26148781 26150036 . - . gene_id "ERVLE_1p36.11a"; transcript_id "ERVLE_1p36.11a"; locus "ERVLE_1p36.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0028"; model_cov "748"; model_pct "13.2"; chr1 rmsk exon 26148781 26149319 1352 - . gene_id "ERVLE_1p36.11a"; transcript_id "ERVLE_1p36.11a"; locus "ERVLE_1p36.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0028"; repClass "LTR"; repEnd "1798"; repFamily "ERVL"; repLeft "1235"; repStart "-3869"; chr1 rmsk exon 26149859 26150036 414 - . gene_id "ERVLE_1p36.11a"; transcript_id "ERVLE_1p36.11a"; locus "ERVLE_1p36.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0028"; repClass "LTR"; repEnd "1216"; repFamily "ERVL"; repLeft "1031"; repStart "-4451"; ### MER41_1p36.11 ### chr1 rmsk gene 26630245 26636092 . + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0003"; model_cov "3184"; model_pct "53.5"; chr1 rmsk exon 26630245 26630284 326 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "280"; repFamily "ERV1"; repLeft "-5666"; repStart "241"; chr1 rmsk exon 26630418 26630568 1194 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "-5513"; repStart "283"; chr1 rmsk exon 26630754 26631094 8153 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "940"; repFamily "ERV1"; repLeft "-5006"; repStart "616"; chr1 rmsk exon 26631400 26631508 8153 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "-4922"; repStart "941"; chr1 rmsk exon 26631736 26632821 8153 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "2110"; repFamily "ERV1"; repLeft "-3836"; repStart "1025"; chr1 rmsk exon 26633123 26633264 5388 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "4231"; repFamily "ERV1"; repLeft "-1715"; repStart "4114"; chr1 rmsk exon 26633868 26634089 5388 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "4429"; repFamily "ERV1"; repLeft "-1517"; repStart "4232"; chr1 rmsk exon 26634393 26634601 5388 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "4610"; repFamily "ERV1"; repLeft "-1336"; repStart "4430"; chr1 rmsk exon 26635237 26635617 5388 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "4833"; repFamily "ERV1"; repLeft "-1113"; repStart "4080"; chr1 rmsk exon 26635649 26635904 1860 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0003"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5690"; chr1 rmsk exon 26635905 26636092 1584 + . gene_id "MER41_1p36.11"; transcript_id "MER41_1p36.11"; locus "MER41_1p36.11"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0003"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "-443"; repStart "1"; ### ERVLE_1p36.11b ### chr1 rmsk gene 26811581 26816449 . + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0029"; model_cov "1926"; model_pct "34.0"; chr1 rmsk exon 26811581 26812145 2766 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "1098"; repFamily "ERVL"; repLeft "-4569"; repStart "540"; chr1 rmsk exon 26812759 26813137 2766 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "1490"; repFamily "ERVL"; repLeft "-4177"; repStart "1099"; chr1 rmsk exon 26813148 26813694 1484 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "2234"; repFamily "ERVL"; repLeft "-3433"; repStart "1633"; chr1 rmsk exon 26814707 26814834 598 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "2359"; repFamily "ERVL"; repLeft "-3308"; repStart "2232"; chr1 rmsk exon 26815424 26815478 251 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "2409"; repFamily "ERVL"; repLeft "-3258"; repStart "2355"; chr1 rmsk exon 26815486 26815562 257 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-3138"; repStart "2454"; chr1 rmsk exon 26816329 26816449 476 + . gene_id "ERVLE_1p36.11b"; transcript_id "ERVLE_1p36.11b"; locus "ERVLE_1p36.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0029"; repClass "LTR"; repEnd "2626"; repFamily "ERVL"; repLeft "-3041"; repStart "2506"; ### ERVLE_1p36.11c ### chr1 rmsk gene 27070419 27074352 . + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0030"; model_cov "1272"; model_pct "22.4"; chr1 rmsk exon 27070419 27070790 620 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "3488"; repFamily "ERVL"; repLeft "-2179"; repStart "3101"; chr1 rmsk exon 27071484 27071744 547 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "-1665"; repStart "3726"; chr1 rmsk exon 27073070 27073160 360 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "4169"; repFamily "ERVL"; repLeft "-1498"; repStart "4078"; chr1 rmsk exon 27073179 27073325 330 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "4388"; repFamily "ERVL"; repLeft "-1279"; repStart "4124"; chr1 rmsk exon 27073834 27073913 339 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "4654"; repFamily "ERVL"; repLeft "-1013"; repStart "4576"; chr1 rmsk exon 27074201 27074352 349 + . gene_id "ERVLE_1p36.11c"; transcript_id "ERVLE_1p36.11c"; locus "ERVLE_1p36.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0030"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "-789"; repStart "4702"; ### ERVLE_1p36.11d ### chr1 rmsk gene 27087720 27095180 . + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0031"; model_cov "3956"; model_pct "69.8"; chr1 rmsk exon 27087720 27088633 1715 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "970"; repFamily "ERVL"; repLeft "-4697"; repStart "1"; chr1 rmsk exon 27088767 27088944 1715 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "1157"; repFamily "ERVL"; repLeft "-4510"; repStart "971"; chr1 rmsk exon 27089059 27089236 592 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "2948"; repFamily "ERVL"; repLeft "-2719"; repStart "2769"; chr1 rmsk exon 27089419 27090244 4792 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "-2434"; repStart "2382"; chr1 rmsk exon 27090845 27091711 4792 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "4086"; repFamily "ERVL"; repLeft "-1581"; repStart "3234"; chr1 rmsk exon 27093105 27093213 4792 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "-1464"; repStart "4087"; chr1 rmsk exon 27094084 27094443 966 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "4939"; repFamily "ERVL"; repLeft "-728"; repStart "4550"; chr1 rmsk exon 27094753 27095180 966 + . gene_id "ERVLE_1p36.11d"; transcript_id "ERVLE_1p36.11d"; locus "ERVLE_1p36.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0031"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "-313"; repStart "4940"; ### ERVLE_1p35.3a ### chr1 rmsk gene 27672710 27674802 . - . gene_id "ERVLE_1p35.3a"; transcript_id "ERVLE_1p35.3a"; locus "ERVLE_1p35.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0032"; model_cov "1510"; model_pct "26.6"; chr1 rmsk exon 27672710 27673822 3120 - . gene_id "ERVLE_1p35.3a"; transcript_id "ERVLE_1p35.3a"; locus "ERVLE_1p35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0032"; repClass "LTR"; repEnd "4534"; repFamily "ERVL"; repLeft "3364"; repStart "-1133"; chr1 rmsk exon 27674136 27674165 3120 - . gene_id "ERVLE_1p35.3a"; transcript_id "ERVLE_1p35.3a"; locus "ERVLE_1p35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0032"; repClass "LTR"; repEnd "3363"; repFamily "ERVL"; repLeft "3337"; repStart "-2304"; chr1 rmsk exon 27674455 27674802 3120 - . gene_id "ERVLE_1p35.3a"; transcript_id "ERVLE_1p35.3a"; locus "ERVLE_1p35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0032"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "3022"; repStart "-2331"; ### MER41_1p35.3 ### chr1 rmsk gene 27690156 27694283 . - . gene_id "MER41_1p35.3"; transcript_id "MER41_1p35.3"; locus "MER41_1p35.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0004"; model_cov "3349"; model_pct "56.3"; chr1 rmsk exon 27690156 27690778 4048 - . gene_id "MER41_1p35.3"; transcript_id "MER41_1p35.3"; locus "MER41_1p35.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0004"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 27690779 27693730 20279 - . gene_id "MER41_1p35.3"; transcript_id "MER41_1p35.3"; locus "MER41_1p35.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0004"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3036"; repStart "0"; chr1 rmsk exon 27693833 27694283 20279 - . gene_id "MER41_1p35.3"; transcript_id "MER41_1p35.3"; locus "MER41_1p35.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0004"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "2596"; repStart "-2911"; ### ERVLE_1p35.3b ### chr1 rmsk gene 27697848 27698817 . - . gene_id "ERVLE_1p35.3b"; transcript_id "ERVLE_1p35.3b"; locus "ERVLE_1p35.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0033"; model_cov "667"; model_pct "11.8"; chr1 rmsk exon 27697848 27697943 333 - . gene_id "ERVLE_1p35.3b"; transcript_id "ERVLE_1p35.3b"; locus "ERVLE_1p35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0033"; repClass "LTR"; repEnd "2195"; repFamily "ERVL"; repLeft "2099"; repStart "-3472"; chr1 rmsk exon 27697930 27698272 671 - . gene_id "ERVLE_1p35.3b"; transcript_id "ERVLE_1p35.3b"; locus "ERVLE_1p35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0033"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2383"; repStart "-2909"; chr1 rmsk exon 27698623 27698817 448 - . gene_id "ERVLE_1p35.3b"; transcript_id "ERVLE_1p35.3b"; locus "ERVLE_1p35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0033"; repClass "LTR"; repEnd "1425"; repFamily "ERVL"; repLeft "1229"; repStart "-4242"; ### HARLEQUIN_1p35.3 ### chr1 rmsk gene 28586907 28589810 . - . gene_id "HARLEQUIN_1p35.3"; transcript_id "HARLEQUIN_1p35.3"; locus "HARLEQUIN_1p35.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0004"; model_cov "2297"; model_pct "33.3"; chr1 rmsk exon 28586907 28587388 4072 - . gene_id "HARLEQUIN_1p35.3"; transcript_id "HARLEQUIN_1p35.3"; locus "HARLEQUIN_1p35.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0004"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 28587389 28587792 2880 - . gene_id "HARLEQUIN_1p35.3"; transcript_id "HARLEQUIN_1p35.3"; locus "HARLEQUIN_1p35.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0004"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6496"; repStart "0"; chr1 rmsk exon 28587927 28589810 11614 - . gene_id "HARLEQUIN_1p35.3"; transcript_id "HARLEQUIN_1p35.3"; locus "HARLEQUIN_1p35.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0004"; repClass "LTR"; repEnd "6513"; repFamily "ERV1"; repLeft "4616"; repStart "-383"; ### HERVL_1p35.3a ### chr1 rmsk gene 28654009 28659822 . - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0005"; model_cov "3665"; model_pct "64.8"; chr1 rmsk exon 28654009 28654930 20281 - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0005"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "4024"; repStart "-717"; chr1 rmsk exon 28655233 28656855 20281 - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0005"; repClass "LTR"; repEnd "4023"; repFamily "ERVL"; repLeft "2283"; repStart "-1631"; chr1 rmsk exon 28657302 28657846 20281 - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0005"; repClass "LTR"; repEnd "2279"; repFamily "ERVL"; repLeft "1731"; repStart "-3375"; chr1 rmsk exon 28658145 28658228 20281 - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0005"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "1642"; repStart "-3924"; chr1 rmsk exon 28659439 28659822 2420 - . gene_id "HERVL_1p35.3a"; transcript_id "HERVL_1p35.3a"; locus "HERVL_1p35.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0005"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "1204"; repStart "-4074"; ### ERVLE_1p35.3c ### chr1 rmsk gene 29333293 29340974 . + . gene_id "ERVLE_1p35.3c"; transcript_id "ERVLE_1p35.3c"; locus "ERVLE_1p35.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0035"; model_cov "5498"; model_pct "97.0"; chr1 rmsk exon 29333293 29334777 10273 + . gene_id "ERVLE_1p35.3c"; transcript_id "ERVLE_1p35.3c"; locus "ERVLE_1p35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0035"; repClass "LTR"; repEnd "1883"; repFamily "ERVL"; repLeft "-3784"; repStart "305"; chr1 rmsk exon 29335059 29337837 10273 + . gene_id "ERVLE_1p35.3c"; transcript_id "ERVLE_1p35.3c"; locus "ERVLE_1p35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0035"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "-881"; repStart "1818"; chr1 rmsk exon 29339494 29340154 2215 + . gene_id "ERVLE_1p35.3c"; transcript_id "ERVLE_1p35.3c"; locus "ERVLE_1p35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0035"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "-304"; repStart "4706"; chr1 rmsk exon 29340687 29340974 2215 + . gene_id "ERVLE_1p35.3c"; transcript_id "ERVLE_1p35.3c"; locus "ERVLE_1p35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0035"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "-7"; repStart "5365"; ### ERVLE_1p35.3d ### chr1 rmsk gene 29405644 29406960 . + . gene_id "ERVLE_1p35.3d"; transcript_id "ERVLE_1p35.3d"; locus "ERVLE_1p35.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0036"; model_cov "1349"; model_pct "23.8"; chr1 rmsk exon 29405644 29406960 3609 + . gene_id "ERVLE_1p35.3d"; transcript_id "ERVLE_1p35.3d"; locus "ERVLE_1p35.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0036"; repClass "LTR"; repEnd "3199"; repFamily "ERVL"; repLeft "-2468"; repStart "1850"; ### ERV316A3_1p35.3a ### chr1 rmsk gene 29473273 29474542 . - . gene_id "ERV316A3_1p35.3a"; transcript_id "ERV316A3_1p35.3a"; locus "ERV316A3_1p35.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0011"; model_cov "1340"; model_pct "25.6"; chr1 rmsk exon 29473273 29474542 1523 - . gene_id "ERV316A3_1p35.3a"; transcript_id "ERV316A3_1p35.3a"; locus "ERV316A3_1p35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0011"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "117"; repStart "-3769"; ### HERVL40_1p35.3 ### chr1 rmsk gene 29539105 29540316 . - . gene_id "HERVL40_1p35.3"; transcript_id "HERVL40_1p35.3"; locus "HERVL40_1p35.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0005"; model_cov "935"; model_pct "16.9"; chr1 rmsk exon 29539105 29539340 493 - . gene_id "HERVL40_1p35.3"; transcript_id "HERVL40_1p35.3"; locus "HERVL40_1p35.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0005"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "161"; repStart "-56"; chr1 rmsk exon 29539548 29540316 967 - . gene_id "HERVL40_1p35.3"; transcript_id "HERVL40_1p35.3"; locus "HERVL40_1p35.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0005"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "2387"; repStart "-2208"; ### HERV4_1p35.3 ### chr1 rmsk gene 29563476 29565515 . - . gene_id "HERV4_1p35.3"; transcript_id "HERV4_1p35.3"; locus "HERV4_1p35.3"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0003"; model_cov "1609"; model_pct "24.6"; chr1 rmsk exon 29563476 29563538 296 - . gene_id "HERV4_1p35.3"; transcript_id "HERV4_1p35.3"; locus "HERV4_1p35.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0003"; repClass "LTR"; repEnd "4852"; repFamily "ERV1"; repLeft "4789"; repStart "-1687"; chr1 rmsk exon 29564225 29565515 663 - . gene_id "HERV4_1p35.3"; transcript_id "HERV4_1p35.3"; locus "HERV4_1p35.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0003"; repClass "LTR"; repEnd "2601"; repFamily "ERV1"; repLeft "1055"; repStart "-3938"; ### MER101_1p35.3 ### chr1 rmsk gene 29607043 29611011 . + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0004"; model_cov "3896"; model_pct "58.7"; chr1 rmsk exon 29607043 29607649 1304 + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0004"; repClass "LTR"; repEnd "2623"; repFamily "ERV1"; repLeft "-4016"; repStart "1636"; chr1 rmsk exon 29607949 29608013 1304 + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0004"; repClass "LTR"; repEnd "2675"; repFamily "ERV1"; repLeft "-3964"; repStart "2624"; chr1 rmsk exon 29608168 29610178 5272 + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0004"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "-1228"; repStart "2788"; chr1 rmsk exon 29610482 29610671 1601 + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0004"; repClass "LTR"; repEnd "5777"; repFamily "ERV1"; repLeft "-862"; repStart "5586"; chr1 rmsk exon 29610960 29611011 1601 + . gene_id "MER101_1p35.3"; transcript_id "MER101_1p35.3"; locus "MER101_1p35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0004"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "-817"; repStart "5778"; ### ERV316A3_1p35.3b ### chr1 rmsk gene 29684136 29685259 . + . gene_id "ERV316A3_1p35.3b"; transcript_id "ERV316A3_1p35.3b"; locus "ERV316A3_1p35.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0012"; model_cov "1073"; model_pct "20.5"; chr1 rmsk exon 29684136 29685259 3184 + . gene_id "ERV316A3_1p35.3b"; transcript_id "ERV316A3_1p35.3b"; locus "ERV316A3_1p35.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0012"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "-382"; repStart "3771"; ### HML3_1p35.3 ### chr1 rmsk gene 29716607 29717792 . - . gene_id "HML3_1p35.3"; transcript_id "HML3_1p35.3"; locus "HML3_1p35.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0009"; model_cov "712"; model_pct "11.8"; chr1 rmsk exon 29716607 29717265 5587 - . gene_id "HML3_1p35.3"; transcript_id "HML3_1p35.3"; locus "HML3_1p35.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0009"; repClass "LTR"; repEnd "1072"; repFamily "ERVK"; repLeft "360"; repStart "-4949"; chr1 rmsk exon 29717283 29717792 4061 - . gene_id "HML3_1p35.3"; transcript_id "HML3_1p35.3"; locus "HML3_1p35.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0009"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_1p35.3b ### chr1 rmsk gene 29794201 29800046 . + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0006"; model_cov "4861"; model_pct "86.0"; chr1 rmsk exon 29794201 29794568 3025 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-42"; repStart "1"; chr1 rmsk exon 29794683 29794724 3025 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "403"; chr1 rmsk exon 29794725 29796234 32601 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "1540"; repFamily "ERVL"; repLeft "-4114"; repStart "1"; chr1 rmsk exon 29796326 29799198 32601 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "4474"; repFamily "ERVL"; repLeft "-1180"; repStart "1541"; chr1 rmsk exon 29799192 29799579 2698 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5265"; chr1 rmsk exon 29799584 29800046 2925 + . gene_id "HERVL_1p35.3b"; transcript_id "HERVL_1p35.3b"; locus "HERVL_1p35.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0006"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERV316A3_1p35.2 ### chr1 rmsk gene 29950154 29954214 . + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0013"; model_cov "2883"; model_pct "55.2"; chr1 rmsk exon 29950154 29950356 649 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "255"; chr1 rmsk exon 29950380 29951374 2050 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "979"; repFamily "ERVL"; repLeft "-4247"; repStart "17"; chr1 rmsk exon 29951787 29952045 2050 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "1302"; repFamily "ERVL"; repLeft "-3924"; repStart "980"; chr1 rmsk exon 29952085 29952209 327 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "-3729"; repStart "1373"; chr1 rmsk exon 29952788 29953693 2637 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "-2760"; repStart "1577"; chr1 rmsk exon 29953684 29954214 900 + . gene_id "ERV316A3_1p35.2"; transcript_id "ERV316A3_1p35.2"; locus "ERV316A3_1p35.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0013"; repClass "LTR"; repEnd "5167"; repFamily "ERVL"; repLeft "-59"; repStart "4581"; ### ERVLE_1p35.2a ### chr1 rmsk gene 30061549 30063910 . + . gene_id "ERVLE_1p35.2a"; transcript_id "ERVLE_1p35.2a"; locus "ERVLE_1p35.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0040"; model_cov "971"; model_pct "17.1"; chr1 rmsk exon 30061549 30062106 1064 + . gene_id "ERVLE_1p35.2a"; transcript_id "ERVLE_1p35.2a"; locus "ERVLE_1p35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0040"; repClass "LTR"; repEnd "563"; repFamily "ERVL"; repLeft "-5104"; repStart "5"; chr1 rmsk exon 30062341 30062441 714 + . gene_id "ERVLE_1p35.2a"; transcript_id "ERVLE_1p35.2a"; locus "ERVLE_1p35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0040"; repClass "LTR"; repEnd "3261"; repFamily "ERVL"; repLeft "-2406"; repStart "3162"; chr1 rmsk exon 30062962 30063087 714 + . gene_id "ERVLE_1p35.2a"; transcript_id "ERVLE_1p35.2a"; locus "ERVLE_1p35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0040"; repClass "LTR"; repEnd "3387"; repFamily "ERVL"; repLeft "-2280"; repStart "3262"; chr1 rmsk exon 30063726 30063910 653 + . gene_id "ERVLE_1p35.2a"; transcript_id "ERVLE_1p35.2a"; locus "ERVLE_1p35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0040"; repClass "LTR"; repEnd "3853"; repFamily "ERVL"; repLeft "-1814"; repStart "3664"; ### MER101_1p35.2 ### chr1 rmsk gene 30174802 30178548 . - . gene_id "MER101_1p35.2"; transcript_id "MER101_1p35.2"; locus "MER101_1p35.2"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0006"; model_cov "3967"; model_pct "59.8"; chr1 rmsk exon 30174802 30174951 817 - . gene_id "MER101_1p35.2"; transcript_id "MER101_1p35.2"; locus "MER101_1p35.2"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0006"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "298"; repStart "0"; chr1 rmsk exon 30175342 30176965 4376 - . gene_id "MER101_1p35.2"; transcript_id "MER101_1p35.2"; locus "MER101_1p35.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0006"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "3107"; repStart "-1228"; chr1 rmsk exon 30177091 30178548 2424 - . gene_id "MER101_1p35.2"; transcript_id "MER101_1p35.2"; locus "MER101_1p35.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0006"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "1103"; repStart "-3873"; ### ERVLE_1p35.2b ### chr1 rmsk gene 30181315 30182428 . + . gene_id "ERVLE_1p35.2b"; transcript_id "ERVLE_1p35.2b"; locus "ERVLE_1p35.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0041"; model_cov "871"; model_pct "15.4"; chr1 rmsk exon 30181315 30181589 1624 + . gene_id "ERVLE_1p35.2b"; transcript_id "ERVLE_1p35.2b"; locus "ERVLE_1p35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0041"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "-563"; repStart "4840"; chr1 rmsk exon 30181897 30182428 1624 + . gene_id "ERVLE_1p35.2b"; transcript_id "ERVLE_1p35.2b"; locus "ERVLE_1p35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0041"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "5058"; ### HERVH_1p35.2 ### chr1 rmsk gene 30203678 30209113 . + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0010"; model_cov "4675"; model_pct "60.6"; chr1 rmsk exon 30203678 30204065 2720 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 30204066 30204521 1964 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr1 rmsk exon 30204580 30206635 13312 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "791"; chr1 rmsk exon 30206636 30207933 4113 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4416"; chr1 rmsk exon 30207924 30208184 1684 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr1 rmsk exon 30208178 30208729 3632 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 30208730 30209113 2607 + . gene_id "HERVH_1p35.2"; transcript_id "HERVH_1p35.2"; locus "HERVH_1p35.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0010"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_1p35.2 ### chr1 rmsk gene 30288580 30290268 . + . gene_id "ERVLB4_1p35.2"; transcript_id "ERVLB4_1p35.2"; locus "ERVLB4_1p35.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0009"; model_cov "1679"; model_pct "29.4"; chr1 rmsk exon 30288580 30289084 296 + . gene_id "ERVLB4_1p35.2"; transcript_id "ERVLB4_1p35.2"; locus "ERVLB4_1p35.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0009"; repClass "LTR"; repEnd "675"; repFamily "ERVL"; repLeft "-5039"; repStart "110"; chr1 rmsk exon 30289125 30289585 915 + . gene_id "ERVLB4_1p35.2"; transcript_id "ERVLB4_1p35.2"; locus "ERVLB4_1p35.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0009"; repClass "LTR"; repEnd "1290"; repFamily "ERVL"; repLeft "-4424"; repStart "805"; chr1 rmsk exon 30289637 30289949 750 + . gene_id "ERVLB4_1p35.2"; transcript_id "ERVLB4_1p35.2"; locus "ERVLB4_1p35.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0009"; repClass "LTR"; repEnd "1672"; repFamily "ERVL"; repLeft "-4042"; repStart "1353"; chr1 rmsk exon 30289973 30290268 868 + . gene_id "ERVLB4_1p35.2"; transcript_id "ERVLB4_1p35.2"; locus "ERVLB4_1p35.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0009"; repClass "LTR"; repEnd "2058"; repFamily "ERVL"; repLeft "-3656"; repStart "1748"; ### ERVLE_1p35.2c ### chr1 rmsk gene 30380702 30383477 . - . gene_id "ERVLE_1p35.2c"; transcript_id "ERVLE_1p35.2c"; locus "ERVLE_1p35.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0042"; model_cov "2878"; model_pct "50.8"; chr1 rmsk exon 30380702 30383291 6938 - . gene_id "ERVLE_1p35.2c"; transcript_id "ERVLE_1p35.2c"; locus "ERVLE_1p35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0042"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "2980"; repStart "0"; chr1 rmsk exon 30383290 30383477 603 - . gene_id "ERVLE_1p35.2c"; transcript_id "ERVLE_1p35.2c"; locus "ERVLE_1p35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0042"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "2602"; repStart "-2874"; ### ERVLE_1p35.2d ### chr1 rmsk gene 30473110 30475382 . + . gene_id "ERVLE_1p35.2d"; transcript_id "ERVLE_1p35.2d"; locus "ERVLE_1p35.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0043"; model_cov "2277"; model_pct "40.2"; chr1 rmsk exon 30473110 30473780 820 + . gene_id "ERVLE_1p35.2d"; transcript_id "ERVLE_1p35.2d"; locus "ERVLE_1p35.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0043"; repClass "LTR"; repEnd "702"; repFamily "ERVL"; repLeft "-4965"; repStart "10"; chr1 rmsk exon 30473782 30475382 2352 + . gene_id "ERVLE_1p35.2d"; transcript_id "ERVLE_1p35.2d"; locus "ERVLE_1p35.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0043"; repClass "LTR"; repEnd "3841"; repFamily "ERVL"; repLeft "-1826"; repStart "2256"; ### ERVLE_1p35.2e ### chr1 rmsk gene 30543476 30544343 . + . gene_id "ERVLE_1p35.2e"; transcript_id "ERVLE_1p35.2e"; locus "ERVLE_1p35.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0044"; model_cov "893"; model_pct "15.8"; chr1 rmsk exon 30543476 30543616 702 + . gene_id "ERVLE_1p35.2e"; transcript_id "ERVLE_1p35.2e"; locus "ERVLE_1p35.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0044"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "-1469"; repStart "4058"; chr1 rmsk exon 30543602 30544343 1961 + . gene_id "ERVLE_1p35.2e"; transcript_id "ERVLE_1p35.2e"; locus "ERVLE_1p35.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0044"; repClass "LTR"; repEnd "5408"; repFamily "ERVL"; repLeft "-259"; repStart "4655"; ### MER34B_1p35.2 ### chr1 rmsk gene 30922070 30925887 . - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0003"; model_cov "1665"; model_pct "31.1"; chr1 rmsk exon 30922070 30922980 2703 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "4018"; repFamily "ERV1"; repLeft "3292"; repStart "-1338"; chr1 rmsk exon 30923235 30923716 2703 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2871"; repFamily "ERV1"; repLeft "2391"; repStart "-2485"; chr1 rmsk exon 30924024 30924048 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2480"; repFamily "ERV1"; repLeft "2447"; repStart "-2876"; chr1 rmsk exon 30924360 30924383 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2446"; repFamily "ERV1"; repLeft "2424"; repStart "-2910"; chr1 rmsk exon 30924512 30924552 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2423"; repFamily "ERV1"; repLeft "2378"; repStart "-2933"; chr1 rmsk exon 30924859 30924877 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2377"; repFamily "ERV1"; repLeft "2365"; repStart "-2979"; chr1 rmsk exon 30925190 30925378 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2364"; repFamily "ERV1"; repLeft "2176"; repStart "-2992"; chr1 rmsk exon 30925677 30925805 2231 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "2175"; repFamily "ERV1"; repLeft "2048"; repStart "-3181"; chr1 rmsk exon 30925857 30925887 319 - . gene_id "MER34B_1p35.2"; transcript_id "MER34B_1p35.2"; locus "MER34B_1p35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0003"; repClass "LTR"; repEnd "1812"; repFamily "ERV1"; repLeft "1780"; repStart "-3544"; ### HERVIP10F_1p35.2a ### chr1 rmsk gene 31453515 31457948 . - . gene_id "HERVIP10F_1p35.2a"; transcript_id "HERVIP10F_1p35.2a"; locus "HERVIP10F_1p35.2a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0004"; model_cov "5922"; model_pct "76.5"; chr1 rmsk exon 31453515 31454101 3067 - . gene_id "HERVIP10F_1p35.2a"; transcript_id "HERVIP10F_1p35.2a"; locus "HERVIP10F_1p35.2a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0004"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "1"; repStart "-54"; chr1 rmsk exon 31454103 31457948 13687 - . gene_id "HERVIP10F_1p35.2a"; transcript_id "HERVIP10F_1p35.2a"; locus "HERVIP10F_1p35.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0004"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "1812"; repStart "-3"; ### HERVIP10F_1p35.2b ### chr1 rmsk gene 31457949 31467319 . + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0005"; model_cov "7733"; model_pct "99.9"; chr1 rmsk exon 31457949 31458568 3524 + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0005"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "-21"; repStart "1"; chr1 rmsk exon 31458573 31459037 2616 + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0005"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "-7126"; repStart "136"; chr1 rmsk exon 31459063 31459083 2616 + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0005"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "-7114"; repStart "612"; chr1 rmsk exon 31459371 31466684 34543 + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0005"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "490"; chr1 rmsk exon 31466685 31467319 3709 + . gene_id "HERVIP10F_1p35.2b"; transcript_id "HERVIP10F_1p35.2b"; locus "HERVIP10F_1p35.2b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0005"; repClass "LTR"; repEnd "627"; repFamily "ERV1"; repLeft "-6"; repStart "1"; ### HERVIP10F_1p35.2c ### chr1 rmsk gene 31467354 31471933 . - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0006"; model_cov "3340"; model_pct "43.2"; chr1 rmsk exon 31467354 31468213 5726 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "4465"; repFamily "ERV1"; repLeft "3578"; repStart "-3272"; chr1 rmsk exon 31468516 31468784 5726 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "3577"; repFamily "ERV1"; repLeft "3317"; repStart "-4160"; chr1 rmsk exon 31468764 31469049 3002 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "2931"; repStart "-4510"; chr1 rmsk exon 31469343 31469737 3002 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "2930"; repFamily "ERV1"; repLeft "2527"; repStart "-4807"; chr1 rmsk exon 31469971 31470600 2570 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "2176"; repFamily "ERV1"; repLeft "1537"; repStart "-5561"; chr1 rmsk exon 31470578 31470769 704 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "1288"; repFamily "ERV1"; repLeft "1111"; repStart "-6449"; chr1 rmsk exon 31470766 31471320 1456 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "159"; repStart "-6900"; chr1 rmsk exon 31471368 31471933 2931 - . gene_id "HERVIP10F_1p35.2c"; transcript_id "HERVIP10F_1p35.2c"; locus "HERVIP10F_1p35.2c"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0006"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "1"; repStart "-64"; ### HERVL_1p35.2 ### chr1 rmsk gene 31517845 31518912 . + . gene_id "HERVL_1p35.2"; transcript_id "HERVL_1p35.2"; locus "HERVL_1p35.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0007"; model_cov "637"; model_pct "11.3"; chr1 rmsk exon 31517845 31518481 5191 + . gene_id "HERVL_1p35.2"; transcript_id "HERVL_1p35.2"; locus "HERVL_1p35.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0007"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5017"; chr1 rmsk exon 31518486 31518912 3369 + . gene_id "HERVL_1p35.2"; transcript_id "HERVL_1p35.2"; locus "HERVL_1p35.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0007"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "5"; ### ERVLE_1p35.2f ### chr1 rmsk gene 31994776 31995333 . - . gene_id "ERVLE_1p35.2f"; transcript_id "ERVLE_1p35.2f"; locus "ERVLE_1p35.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0045"; model_cov "564"; model_pct "10.0"; chr1 rmsk exon 31994776 31995333 1885 - . gene_id "ERVLE_1p35.2f"; transcript_id "ERVLE_1p35.2f"; locus "ERVLE_1p35.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0045"; repClass "LTR"; repEnd "5254"; repFamily "ERVL"; repLeft "4690"; repStart "-413"; ### ERVLE_1p35.1a ### chr1 rmsk gene 32404945 32411940 . - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0046"; model_cov "3541"; model_pct "62.5"; chr1 rmsk exon 32404945 32405379 3042 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "5376"; repFamily "ERVL"; repLeft "4933"; repStart "-291"; chr1 rmsk exon 32405680 32405909 3042 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "4723"; repStart "-735"; chr1 rmsk exon 32406198 32407035 3042 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "3828"; repStart "-945"; chr1 rmsk exon 32407004 32407197 562 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "4164"; repFamily "ERVL"; repLeft "3959"; repStart "-1503"; chr1 rmsk exon 32407709 32407937 310 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "3805"; repFamily "ERVL"; repLeft "3559"; repStart "-1862"; chr1 rmsk exon 32407954 32408175 581 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "3495"; repFamily "ERVL"; repLeft "3247"; repStart "-2172"; chr1 rmsk exon 32408304 32408446 487 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "3103"; repStart "-2425"; chr1 rmsk exon 32408745 32408854 487 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "2989"; repStart "-2565"; chr1 rmsk exon 32409038 32409336 801 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "2958"; repFamily "ERVL"; repLeft "2528"; repStart "-2709"; chr1 rmsk exon 32410176 32410454 746 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "2520"; repFamily "ERVL"; repLeft "2216"; repStart "-3147"; chr1 rmsk exon 32411244 32411421 290 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "2148"; repFamily "ERVL"; repLeft "1953"; repStart "-3519"; chr1 rmsk exon 32411841 32411940 366 - . gene_id "ERVLE_1p35.1a"; transcript_id "ERVLE_1p35.1a"; locus "ERVLE_1p35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0046"; repClass "LTR"; repEnd "1977"; repFamily "ERVL"; repLeft "1862"; repStart "-3690"; ### HUERSP3B_1p35.1 ### chr1 rmsk gene 32412918 32421941 . + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0001"; model_cov "6980"; model_pct "94.1"; chr1 rmsk exon 32412918 32413527 3555 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 32413531 32413638 711 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "-1388"; repFamily "ERV1"; repLeft "-8806"; repStart "-1497"; chr1 rmsk exon 32413641 32415507 29811 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "2141"; repFamily "ERV1"; repLeft "-5277"; repStart "266"; chr1 rmsk exon 32415820 32416453 29811 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "2706"; repFamily "ERV1"; repLeft "-4712"; repStart "2142"; chr1 rmsk exon 32416762 32419222 29811 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "5222"; repFamily "ERV1"; repLeft "-2196"; repStart "2707"; chr1 rmsk exon 32419836 32421664 29811 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "5583"; repFamily "ERV1"; repLeft "-1835"; repStart "3722"; chr1 rmsk exon 32421886 32421941 391 + . gene_id "HUERSP3B_1p35.1"; transcript_id "HUERSP3B_1p35.1"; locus "HUERSP3B_1p35.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0001"; repClass "LTR"; repEnd "6614"; repFamily "ERV1"; repLeft "-804"; repStart "6558"; ### ERVLE_1p35.1b ### chr1 rmsk gene 32429861 32430430 . - . gene_id "ERVLE_1p35.1b"; transcript_id "ERVLE_1p35.1b"; locus "ERVLE_1p35.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0047"; model_cov "573"; model_pct "10.1"; chr1 rmsk exon 32429861 32430430 722 - . gene_id "ERVLE_1p35.1b"; transcript_id "ERVLE_1p35.1b"; locus "ERVLE_1p35.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0047"; repClass "LTR"; repEnd "1438"; repFamily "ERVL"; repLeft "865"; repStart "-4229"; ### HERVH_1p35.1 ### chr1 rmsk gene 32432337 32438038 . + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0011"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 32432337 32432749 2930 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 32432752 32435743 20752 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 32435738 32435885 930 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 32435876 32436378 3504 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 32436381 32437042 4509 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 32437044 32437262 1513 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 32437261 32437637 2375 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 32437638 32438038 2825 + . gene_id "HERVH_1p35.1"; transcript_id "HERVH_1p35.1"; locus "HERVH_1p35.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0011"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10FH_1p35.1 ### chr1 rmsk gene 32442304 32449911 . - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0005"; model_cov "5097"; model_pct "99.9"; chr1 rmsk exon 32442304 32442714 3325 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "72"; repStart "0"; chr1 rmsk exon 32443016 32443086 3325 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "71"; repFamily "ERV1"; repLeft "1"; repStart "-440"; chr1 rmsk exon 32443113 32446959 34002 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1115"; repStart "0"; chr1 rmsk exon 32447430 32448197 34002 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "214"; repStart "-3988"; chr1 rmsk exon 32449196 32449408 34002 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "3"; repStart "-4889"; chr1 rmsk exon 32449411 32449911 3736 - . gene_id "HERVIP10FH_1p35.1"; transcript_id "HERVIP10FH_1p35.1"; locus "HERVIP10FH_1p35.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0005"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_1p35.1 ### chr1 rmsk gene 32923851 32926914 . - . gene_id "HERVS71_1p35.1"; transcript_id "HERVS71_1p35.1"; locus "HERVS71_1p35.1"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0001"; model_cov "2467"; model_pct "27.5"; chr1 rmsk exon 32923851 32926332 9211 - . gene_id "HERVS71_1p35.1"; transcript_id "HERVS71_1p35.1"; locus "HERVS71_1p35.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0001"; repClass "LTR"; repEnd "2471"; repFamily "ERV1"; repLeft "4"; repStart "-6507"; chr1 rmsk exon 32926335 32926914 4348 - . gene_id "HERVS71_1p35.1"; transcript_id "HERVS71_1p35.1"; locus "HERVS71_1p35.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0001"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1p35.1c ### chr1 rmsk gene 32928071 32931352 . - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0048"; model_cov "1720"; model_pct "30.4"; chr1 rmsk exon 32928071 32928272 404 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "5339"; repFamily "ERVL"; repLeft "5132"; repStart "-328"; chr1 rmsk exon 32928271 32928378 258 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "2806"; repFamily "ERVL"; repLeft "2695"; repStart "-2861"; chr1 rmsk exon 32928667 32928989 1027 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "2323"; repFamily "ERVL"; repLeft "1964"; repStart "-3344"; chr1 rmsk exon 32929446 32929818 1027 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "1963"; repFamily "ERVL"; repLeft "1564"; repStart "-3704"; chr1 rmsk exon 32929841 32930110 1174 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "1439"; repFamily "ERVL"; repLeft "1170"; repStart "-4228"; chr1 rmsk exon 32930708 32930805 1174 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "1163"; repFamily "ERVL"; repLeft "1049"; repStart "-4504"; chr1 rmsk exon 32931102 32931352 1174 - . gene_id "ERVLE_1p35.1c"; transcript_id "ERVLE_1p35.1c"; locus "ERVLE_1p35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0048"; repClass "LTR"; repEnd "1048"; repFamily "ERVL"; repLeft "787"; repStart "-4619"; ### HERVK11_1p35.1 ### chr1 rmsk gene 33065126 33068370 . + . gene_id "HERVK11_1p35.1"; transcript_id "HERVK11_1p35.1"; locus "HERVK11_1p35.1"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0001"; model_cov "3582"; model_pct "45.0"; chr1 rmsk exon 33065126 33066271 3165 + . gene_id "HERVK11_1p35.1"; transcript_id "HERVK11_1p35.1"; locus "HERVK11_1p35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0001"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "206"; chr1 rmsk exon 33066254 33067224 8164 + . gene_id "HERVK11_1p35.1"; transcript_id "HERVK11_1p35.1"; locus "HERVK11_1p35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0001"; repClass "LTR"; repEnd "3884"; repFamily "ERVK"; repLeft "-4069"; repStart "2912"; chr1 rmsk exon 33067199 33067337 948 + . gene_id "HERVK11_1p35.1"; transcript_id "HERVK11_1p35.1"; locus "HERVK11_1p35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0001"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "4462"; chr1 rmsk exon 33067336 33068370 8100 + . gene_id "HERVK11_1p35.1"; transcript_id "HERVK11_1p35.1"; locus "HERVK11_1p35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0001"; repClass "LTR"; repEnd "6617"; repFamily "ERVK"; repLeft "-1336"; repStart "5525"; ### ERV316A3_1p35.1a ### chr1 rmsk gene 33186883 33192763 . - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0014"; model_cov "3228"; model_pct "61.8"; chr1 rmsk exon 33186883 33187349 1290 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 33187607 33187953 3382 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "4769"; repFamily "ERVL"; repLeft "4438"; repStart "-457"; chr1 rmsk exon 33188257 33189505 3382 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "3144"; repStart "-789"; chr1 rmsk exon 33189779 33190540 1168 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "688"; repStart "-3525"; chr1 rmsk exon 33191290 33191490 535 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "1269"; repFamily "ERVL"; repLeft "1066"; repStart "-3957"; chr1 rmsk exon 33191792 33192020 535 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "1065"; repFamily "ERVL"; repLeft "861"; repStart "-4161"; chr1 rmsk exon 33192031 33192215 417 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "15"; repFamily "ERVL"; repLeft "-169"; repStart "-5211"; chr1 rmsk exon 33192507 33192705 403 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "186"; repStart "-96"; chr1 rmsk exon 33192719 33192763 239 - . gene_id "ERV316A3_1p35.1a"; transcript_id "ERV316A3_1p35.1a"; locus "ERV316A3_1p35.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0014"; repClass "LTR"; repEnd "45"; repFamily "ERVL"; repLeft "1"; repStart "-444"; ### ERV316A3_1p35.1b ### chr1 rmsk gene 33581791 33583607 . + . gene_id "ERV316A3_1p35.1b"; transcript_id "ERV316A3_1p35.1b"; locus "ERV316A3_1p35.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0015"; model_cov "1846"; model_pct "35.3"; chr1 rmsk exon 33581791 33582780 1340 + . gene_id "ERV316A3_1p35.1b"; transcript_id "ERV316A3_1p35.1b"; locus "ERV316A3_1p35.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0015"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-3655"; repStart "553"; chr1 rmsk exon 33582777 33583607 2671 + . gene_id "ERV316A3_1p35.1b"; transcript_id "ERV316A3_1p35.1b"; locus "ERV316A3_1p35.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0015"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "-2128"; repStart "2270"; ### ERVLB4_1p35.1 ### chr1 rmsk gene 34050180 34052158 . + . gene_id "ERVLB4_1p35.1"; transcript_id "ERVLB4_1p35.1"; locus "ERVLB4_1p35.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0010"; model_cov "1562"; model_pct "27.3"; chr1 rmsk exon 34050180 34050859 4493 + . gene_id "ERVLB4_1p35.1"; transcript_id "ERVLB4_1p35.1"; locus "ERVLB4_1p35.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0010"; repClass "LTR"; repEnd "4920"; repFamily "ERVL"; repLeft "-794"; repStart "4241"; chr1 rmsk exon 34050912 34051798 4387 + . gene_id "ERVLB4_1p35.1"; transcript_id "ERVLB4_1p35.1"; locus "ERVLB4_1p35.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0010"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4831"; chr1 rmsk exon 34051799 34052158 1373 + . gene_id "ERVLB4_1p35.1"; transcript_id "ERVLB4_1p35.1"; locus "ERVLB4_1p35.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0010"; repClass "LTR"; repEnd "499"; repFamily "ERVL"; repLeft "-57"; repStart "143"; ### ERVLE_1p34.3a ### chr1 rmsk gene 34464782 34466743 . + . gene_id "ERVLE_1p34.3a"; transcript_id "ERVLE_1p34.3a"; locus "ERVLE_1p34.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0050"; model_cov "1493"; model_pct "26.3"; chr1 rmsk exon 34464782 34465547 1102 + . gene_id "ERVLE_1p34.3a"; transcript_id "ERVLE_1p34.3a"; locus "ERVLE_1p34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0050"; repClass "LTR"; repEnd "860"; repFamily "ERVL"; repLeft "-4807"; repStart "82"; chr1 rmsk exon 34465863 34466180 1102 + . gene_id "ERVLE_1p34.3a"; transcript_id "ERVLE_1p34.3a"; locus "ERVLE_1p34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0050"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "-4492"; repStart "861"; chr1 rmsk exon 34466329 34466403 309 + . gene_id "ERVLE_1p34.3a"; transcript_id "ERVLE_1p34.3a"; locus "ERVLE_1p34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0050"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-3387"; repStart "2204"; chr1 rmsk exon 34466429 34466743 567 + . gene_id "ERVLE_1p34.3a"; transcript_id "ERVLE_1p34.3a"; locus "ERVLE_1p34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0050"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "-3020"; repStart "2322"; ### ERVLE_1p34.3b ### chr1 rmsk gene 34601347 34602512 . - . gene_id "ERVLE_1p34.3b"; transcript_id "ERVLE_1p34.3b"; locus "ERVLE_1p34.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0051"; model_cov "1080"; model_pct "19.1"; chr1 rmsk exon 34601347 34602112 1057 - . gene_id "ERVLE_1p34.3b"; transcript_id "ERVLE_1p34.3b"; locus "ERVLE_1p34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0051"; repClass "LTR"; repEnd "5154"; repFamily "ERVL"; repLeft "4170"; repStart "-513"; chr1 rmsk exon 34602420 34602512 355 - . gene_id "ERVLE_1p34.3b"; transcript_id "ERVLE_1p34.3b"; locus "ERVLE_1p34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0051"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "1264"; repStart "-4307"; ### HERVH_1p34.3a ### chr1 rmsk gene 34631960 34636749 . - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0012"; model_cov "4501"; model_pct "58.4"; chr1 rmsk exon 34631960 34632388 3364 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 34632389 34632767 2453 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 34632766 34632982 1431 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 34632987 34633645 4268 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4489"; repStart "-2567"; chr1 rmsk exon 34633649 34634151 3450 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 34634142 34634289 863 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 34634284 34636714 16613 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "404"; repStart "-4726"; chr1 rmsk exon 34636716 34636749 286 - . gene_id "HERVH_1p34.3a"; transcript_id "HERVH_1p34.3a"; locus "HERVH_1p34.3a"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_0012"; repClass "LTR"; repEnd "34"; repFamily "ERV1"; repLeft "1"; repStart "-416"; ### HERVFH19_1p34.3 ### chr1 rmsk gene 35075455 35076339 . + . gene_id "HERVFH19_1p34.3"; transcript_id "HERVFH19_1p34.3"; locus "HERVFH19_1p34.3"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0003"; model_cov "898"; model_pct "11.6"; chr1 rmsk exon 35075455 35076339 7037 + . gene_id "HERVFH19_1p34.3"; transcript_id "HERVFH19_1p34.3"; locus "HERVFH19_1p34.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0003"; repClass "LTR"; repEnd "5039"; repFamily "ERV1"; repLeft "-2680"; repStart "4141"; ### MER4_1p34.3b ### chr1 rmsk gene 35127220 35130565 . - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; category "insert*"; intModel "MER4-int"; locid "MER4-int_0008"; model_cov "1408"; model_pct "21.3"; chr1 rmsk exon 35127220 35127463 7516 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "6470"; repFamily "ERV1"; repLeft "6222"; repStart "-128"; chr1 rmsk exon 35127764 35128454 7516 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "6221"; repFamily "ERV1"; repLeft "5525"; repStart "-377"; chr1 rmsk exon 35128747 35128964 7516 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "5303"; repStart "-1074"; chr1 rmsk exon 35129137 35129265 918 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "1121"; repFamily "ERV1"; repLeft "993"; repStart "-5477"; chr1 rmsk exon 35129265 35129314 375 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; chr1 rmsk exon 35129330 35129404 292 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "752"; repFamily "ERV1"; repLeft "687"; repStart "-5846"; chr1 rmsk exon 35129430 35130092 3372 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0008"; repClass "LTR"; repEnd "809"; repFamily "ERV1"; repLeft "1"; repStart "-5789"; chr1 rmsk exon 35130097 35130565 3573 - . gene_id "MER4_1p34.3b"; transcript_id "MER4_1p34.3b"; locus "MER4_1p34.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0008"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVH_1p34.3b ### chr1 rmsk gene 35132025 35138025 . - . gene_id "HERVH_1p34.3b"; transcript_id "HERVH_1p34.3b"; locus "HERVH_1p34.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0013"; model_cov "5725"; model_pct "74.2"; chr1 rmsk exon 35132025 35132363 1988 - . gene_id "HERVH_1p34.3b"; transcript_id "HERVH_1p34.3b"; locus "HERVH_1p34.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0013"; repClass "LTR"; repEnd "7680"; repFamily "ERV1"; repLeft "7322"; repStart "-33"; chr1 rmsk exon 35132362 35132577 1375 - . gene_id "HERVH_1p34.3b"; transcript_id "HERVH_1p34.3b"; locus "HERVH_1p34.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0013"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 35132579 35137611 26889 - . gene_id "HERVH_1p34.3b"; transcript_id "HERVH_1p34.3b"; locus "HERVH_1p34.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0013"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr1 rmsk exon 35137614 35138025 2825 - . gene_id "HERVH_1p34.3b"; transcript_id "HERVH_1p34.3b"; locus "HERVH_1p34.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0013"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HARLEQUIN_1p34.3a ### chr1 rmsk gene 35138026 35141426 . - . gene_id "HARLEQUIN_1p34.3a"; transcript_id "HARLEQUIN_1p34.3a"; locus "HARLEQUIN_1p34.3a"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0006"; model_cov "3096"; model_pct "44.9"; chr1 rmsk exon 35138026 35140827 24660 - . gene_id "HARLEQUIN_1p34.3a"; transcript_id "HARLEQUIN_1p34.3a"; locus "HARLEQUIN_1p34.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0006"; repClass "LTR"; repEnd "5439"; repFamily "ERV1"; repLeft "2640"; repStart "-1457"; chr1 rmsk exon 35141138 35141426 24660 - . gene_id "HARLEQUIN_1p34.3a"; transcript_id "HARLEQUIN_1p34.3a"; locus "HARLEQUIN_1p34.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0006"; repClass "LTR"; repEnd "2639"; repFamily "ERV1"; repLeft "2342"; repStart "-4257"; ### HERV3_1p34.3 ### chr1 rmsk gene 35141915 35146564 . - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0003"; model_cov "4257"; model_pct "50.5"; chr1 rmsk exon 35141915 35142623 1916 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "8424"; repFamily "ERV1"; repLeft "7625"; repStart "-2"; chr1 rmsk exon 35142680 35143764 5450 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "5148"; repStart "-2113"; chr1 rmsk exon 35143755 35143889 497 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3684"; repStart "-4602"; chr1 rmsk exon 35143876 35144281 1665 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "2049"; repStart "-5957"; chr1 rmsk exon 35144408 35144755 1831 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "2087"; repFamily "ERV1"; repLeft "1722"; repStart "-6339"; chr1 rmsk exon 35144756 35145857 3966 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "1492"; repFamily "ERV1"; repLeft "732"; repStart "-6934"; chr1 rmsk exon 35145876 35146564 3212 - . gene_id "HERV3_1p34.3"; transcript_id "HERV3_1p34.3"; locus "HERV3_1p34.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0003"; repClass "LTR"; repEnd "1222"; repFamily "ERV1"; repLeft "614"; repStart "-7204"; ### HARLEQUIN_1p34.3b ### chr1 rmsk gene 35147038 35149819 . - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0007"; model_cov "1943"; model_pct "28.2"; chr1 rmsk exon 35147038 35147569 3888 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "2341"; repFamily "ERV1"; repLeft "1809"; repStart "-4555"; chr1 rmsk exon 35147554 35147570 10004 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "1415"; repFamily "ERV1"; repLeft "1400"; repStart "-5481"; chr1 rmsk exon 35147887 35148203 10004 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "1399"; repFamily "ERV1"; repLeft "1061"; repStart "-5497"; chr1 rmsk exon 35148229 35149263 10004 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "1060"; repFamily "ERV1"; repLeft "2"; repStart "-5836"; chr1 rmsk exon 35149264 35149322 3261 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "406"; repStart "0"; chr1 rmsk exon 35149626 35149819 3261 - . gene_id "HARLEQUIN_1p34.3b"; transcript_id "HARLEQUIN_1p34.3b"; locus "HARLEQUIN_1p34.3b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0007"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "218"; repStart "-58"; ### ERVLE_1p34.3c ### chr1 rmsk gene 35295660 35297321 . - . gene_id "ERVLE_1p34.3c"; transcript_id "ERVLE_1p34.3c"; locus "ERVLE_1p34.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0053"; model_cov "829"; model_pct "14.6"; chr1 rmsk exon 35295660 35296005 1038 - . gene_id "ERVLE_1p34.3c"; transcript_id "ERVLE_1p34.3c"; locus "ERVLE_1p34.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0053"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "1478"; repStart "-3834"; chr1 rmsk exon 35296466 35296713 312 - . gene_id "ERVLE_1p34.3c"; transcript_id "ERVLE_1p34.3c"; locus "ERVLE_1p34.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0053"; repClass "LTR"; repEnd "942"; repFamily "ERVL"; repLeft "685"; repStart "-4725"; chr1 rmsk exon 35296729 35296822 269 - . gene_id "ERVLE_1p34.3c"; transcript_id "ERVLE_1p34.3c"; locus "ERVLE_1p34.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0053"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "518"; repStart "-5056"; chr1 rmsk exon 35297203 35297321 380 - . gene_id "ERVLE_1p34.3c"; transcript_id "ERVLE_1p34.3c"; locus "ERVLE_1p34.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0053"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "380"; repStart "-5163"; ### ERV316A3_1p34.3a ### chr1 rmsk gene 35648569 35650718 . + . gene_id "ERV316A3_1p34.3a"; transcript_id "ERV316A3_1p34.3a"; locus "ERV316A3_1p34.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0016"; model_cov "559"; model_pct "10.7"; chr1 rmsk exon 35648569 35648716 620 + . gene_id "ERV316A3_1p34.3a"; transcript_id "ERV316A3_1p34.3a"; locus "ERV316A3_1p34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0016"; repClass "LTR"; repEnd "1951"; repFamily "ERVL"; repLeft "-3275"; repStart "1780"; chr1 rmsk exon 35649025 35649222 620 + . gene_id "ERV316A3_1p34.3a"; transcript_id "ERV316A3_1p34.3a"; locus "ERV316A3_1p34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0016"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "-3070"; repStart "1952"; chr1 rmsk exon 35650532 35650718 721 + . gene_id "ERV316A3_1p34.3a"; transcript_id "ERV316A3_1p34.3a"; locus "ERV316A3_1p34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0016"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2175"; repStart "2867"; ### ERV316A3_1p34.3b ### chr1 rmsk gene 35650750 35651744 . + . gene_id "ERV316A3_1p34.3b"; transcript_id "ERV316A3_1p34.3b"; locus "ERV316A3_1p34.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0017"; model_cov "627"; model_pct "12.0"; chr1 rmsk exon 35650750 35650946 620 + . gene_id "ERV316A3_1p34.3b"; transcript_id "ERV316A3_1p34.3b"; locus "ERV316A3_1p34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0017"; repClass "LTR"; repEnd "3014"; repFamily "ERVL"; repLeft "-2212"; repStart "2820"; chr1 rmsk exon 35650915 35651277 1020 + . gene_id "ERV316A3_1p34.3b"; transcript_id "ERV316A3_1p34.3b"; locus "ERV316A3_1p34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0017"; repClass "LTR"; repEnd "4985"; repFamily "ERVL"; repLeft "-241"; repStart "4552"; chr1 rmsk exon 35651393 35651744 941 + . gene_id "ERV316A3_1p34.3b"; transcript_id "ERV316A3_1p34.3b"; locus "ERV316A3_1p34.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0017"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "47"; ### HERVFH21_1p34.3 ### chr1 rmsk gene 36329861 36337342 . + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0003"; model_cov "5039"; model_pct "77.2"; chr1 rmsk exon 36329861 36330271 1729 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr1 rmsk exon 36330313 36330808 1859 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "578"; repFamily "ERV1"; repLeft "-5951"; repStart "74"; chr1 rmsk exon 36330791 36331549 3084 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "1247"; repFamily "ERV1"; repLeft "-5282"; repStart "536"; chr1 rmsk exon 36331545 36333152 7044 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "4554"; repFamily "ERV1"; repLeft "-1975"; repStart "2837"; chr1 rmsk exon 36333451 36334400 6171 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "4948"; repFamily "ERV1"; repLeft "-1581"; repStart "3983"; chr1 rmsk exon 36334572 36334689 599 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "6008"; repFamily "ERV1"; repLeft "-521"; repStart "5893"; chr1 rmsk exon 36335252 36336404 2609 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "6338"; repFamily "ERV1"; repLeft "-191"; repStart "5501"; chr1 rmsk exon 36336716 36336927 2609 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "0"; repStart "6339"; chr1 rmsk exon 36336928 36337342 1823 + . gene_id "HERVFH21_1p34.3"; transcript_id "HERVFH21_1p34.3"; locus "HERVFH21_1p34.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0003"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_1p34.3 ### chr1 rmsk gene 36488984 36491127 . - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0006"; model_cov "1096"; model_pct "14.5"; chr1 rmsk exon 36488984 36489934 5851 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 36490048 36490378 2634 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "7417"; repFamily "ERVK"; repLeft "7087"; repStart "-119"; chr1 rmsk exon 36490359 36491127 5815 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "5868"; repFamily "ERVK"; repLeft "5102"; repStart "-1668"; ### HERVL_1p34.3a ### chr1 rmsk gene 37365035 37371640 . + . gene_id "HERVL_1p34.3a"; transcript_id "HERVL_1p34.3a"; locus "HERVL_1p34.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0008"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 37365035 37365456 2792 + . gene_id "HERVL_1p34.3a"; transcript_id "HERVL_1p34.3a"; locus "HERVL_1p34.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0008"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr1 rmsk exon 37365488 37365527 2792 + . gene_id "HERVL_1p34.3a"; transcript_id "HERVL_1p34.3a"; locus "HERVL_1p34.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0008"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "402"; chr1 rmsk exon 37365528 37371193 46122 + . gene_id "HERVL_1p34.3a"; transcript_id "HERVL_1p34.3a"; locus "HERVL_1p34.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0008"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 37371194 37371640 2922 + . gene_id "HERVL_1p34.3a"; transcript_id "HERVL_1p34.3a"; locus "HERVL_1p34.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0008"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER101_1p34.3 ### chr1 rmsk gene 37526164 37528920 . + . gene_id "MER101_1p34.3"; transcript_id "MER101_1p34.3"; locus "MER101_1p34.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0008"; model_cov "1131"; model_pct "17.0"; chr1 rmsk exon 37526164 37526380 952 + . gene_id "MER101_1p34.3"; transcript_id "MER101_1p34.3"; locus "MER101_1p34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0008"; repClass "LTR"; repEnd "2731"; repFamily "ERV1"; repLeft "-3908"; repStart "2515"; chr1 rmsk exon 37527726 37528283 4207 + . gene_id "MER101_1p34.3"; transcript_id "MER101_1p34.3"; locus "MER101_1p34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0008"; repClass "LTR"; repEnd "3276"; repFamily "ERV1"; repLeft "-3363"; repStart "2735"; chr1 rmsk exon 37528558 37528920 4207 + . gene_id "MER101_1p34.3"; transcript_id "MER101_1p34.3"; locus "MER101_1p34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0008"; repClass "LTR"; repEnd "3651"; repFamily "ERV1"; repLeft "-2988"; repStart "3277"; ### MER41_1p34.3 ### chr1 rmsk gene 37903067 37907814 . + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0005"; model_cov "2240"; model_pct "37.7"; chr1 rmsk exon 37903067 37903444 2620 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0005"; repClass "LTR"; repEnd "381"; repFamily "ERV1"; repLeft "-173"; repStart "1"; chr1 rmsk exon 37903893 37903987 595 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2854"; chr1 rmsk exon 37903975 37904045 9619 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "3857"; repFamily "ERV1"; repLeft "-2089"; repStart "3787"; chr1 rmsk exon 37904354 37904595 9619 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-1858"; repStart "3858"; chr1 rmsk exon 37904892 37905118 12458 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "4199"; repFamily "ERV1"; repLeft "-1747"; repStart "4093"; chr1 rmsk exon 37905431 37906573 12458 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "5353"; repFamily "ERV1"; repLeft "-593"; repStart "4200"; chr1 rmsk exon 37906890 37907479 12458 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0005"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "5354"; chr1 rmsk exon 37907480 37907814 2185 + . gene_id "MER41_1p34.3"; transcript_id "MER41_1p34.3"; locus "MER41_1p34.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0005"; repClass "LTR"; repEnd "337"; repFamily "ERV1"; repLeft "-217"; repStart "1"; ### HERVH_1p34.3c ### chr1 rmsk gene 37907815 37914173 . + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0014"; model_cov "4998"; model_pct "64.8"; chr1 rmsk exon 37907815 37908201 2682 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 37908202 37908453 1382 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "274"; repFamily "ERV1"; repLeft "-7439"; repStart "1"; chr1 rmsk exon 37908590 37908790 1382 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "275"; chr1 rmsk exon 37908850 37910894 12430 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "800"; chr1 rmsk exon 37910895 37911925 4027 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "4319"; repFamily "ERV1"; repLeft "-3394"; repStart "3357"; chr1 rmsk exon 37911924 37912918 6574 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5011"; chr1 rmsk exon 37912912 37912975 3317 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "7211"; repFamily "ERV1"; repLeft "-502"; repStart "7157"; chr1 rmsk exon 37913285 37913777 3317 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "7702"; repFamily "ERV1"; repLeft "-11"; repStart "7212"; chr1 rmsk exon 37913789 37914173 2560 + . gene_id "HERVH_1p34.3c"; transcript_id "HERVH_1p34.3c"; locus "HERVH_1p34.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0014"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p34.3b ### chr1 rmsk gene 38144395 38150922 . + . gene_id "HERVL_1p34.3b"; transcript_id "HERVL_1p34.3b"; locus "HERVL_1p34.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0009"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 38144395 38144849 2965 + . gene_id "HERVL_1p34.3b"; transcript_id "HERVL_1p34.3b"; locus "HERVL_1p34.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0009"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 38144850 38150489 44494 + . gene_id "HERVL_1p34.3b"; transcript_id "HERVL_1p34.3b"; locus "HERVL_1p34.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0009"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 38150490 38150922 2919 + . gene_id "HERVL_1p34.3b"; transcript_id "HERVL_1p34.3b"; locus "HERVL_1p34.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0009"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_1p34.3c ### chr1 rmsk gene 38155702 38159588 . + . gene_id "ERV316A3_1p34.3c"; transcript_id "ERV316A3_1p34.3c"; locus "ERV316A3_1p34.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0018"; model_cov "4096"; model_pct "78.4"; chr1 rmsk exon 38155702 38157579 3348 + . gene_id "ERV316A3_1p34.3c"; transcript_id "ERV316A3_1p34.3c"; locus "ERV316A3_1p34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0018"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "-2893"; repStart "313"; chr1 rmsk exon 38157618 38159588 3781 + . gene_id "ERV316A3_1p34.3c"; transcript_id "ERV316A3_1p34.3c"; locus "ERV316A3_1p34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0018"; repClass "LTR"; repEnd "4834"; repFamily "ERVL"; repLeft "-392"; repStart "2758"; ### HERVH_1p34.3d ### chr1 rmsk gene 38425114 38430779 . + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0015"; model_cov "4903"; model_pct "63.6"; chr1 rmsk exon 38425114 38425524 2815 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 38425527 38428474 18329 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 38428469 38428616 841 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 38428607 38429109 3215 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 38429112 38429772 4120 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr1 rmsk exon 38429777 38429993 1291 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 38429994 38430368 2267 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 38430369 38430779 2915 + . gene_id "HERVH_1p34.3d"; transcript_id "HERVH_1p34.3d"; locus "HERVH_1p34.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0015"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_1p34.3a ### chr1 rmsk gene 39070989 39075809 . - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0010"; model_cov "2162"; model_pct "32.8"; chr1 rmsk exon 39070989 39071022 270 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0010"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "439"; repStart "0"; chr1 rmsk exon 39071265 39072156 11153 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "4989"; repStart "-686"; chr1 rmsk exon 39073326 39073952 11153 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "4988"; repFamily "ERV1"; repLeft "4374"; repStart "-1610"; chr1 rmsk exon 39074257 39074490 11153 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "4373"; repFamily "ERV1"; repLeft "4118"; repStart "-2225"; chr1 rmsk exon 39074784 39074886 11153 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "4117"; repFamily "ERV1"; repLeft "4028"; repStart "-2481"; chr1 rmsk exon 39075180 39075333 11153 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "4027"; repFamily "ERV1"; repLeft "3919"; repStart "-2571"; chr1 rmsk exon 39075635 39075809 735 - . gene_id "MER4_1p34.3a"; transcript_id "MER4_1p34.3a"; locus "MER4_1p34.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0010"; repClass "LTR"; repEnd "1999"; repFamily "ERV1"; repLeft "1826"; repStart "-4599"; ### ERVLE_1p34.2a ### chr1 rmsk gene 40288340 40289668 . - . gene_id "ERVLE_1p34.2a"; transcript_id "ERVLE_1p34.2a"; locus "ERVLE_1p34.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0056"; model_cov "1309"; model_pct "23.1"; chr1 rmsk exon 40288340 40289444 2743 - . gene_id "ERVLE_1p34.2a"; transcript_id "ERVLE_1p34.2a"; locus "ERVLE_1p34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0056"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "3190"; repStart "-1347"; chr1 rmsk exon 40289490 40289668 560 - . gene_id "ERVLE_1p34.2a"; transcript_id "ERVLE_1p34.2a"; locus "ERVLE_1p34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0056"; repClass "LTR"; repEnd "3170"; repFamily "ERVL"; repLeft "2991"; repStart "-2497"; ### ERVLB4_1p34.2a ### chr1 rmsk gene 40433079 40436076 . + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0012"; model_cov "1444"; model_pct "25.3"; chr1 rmsk exon 40433079 40433224 258 + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0012"; repClass "LTR"; repEnd "1397"; repFamily "ERVL"; repLeft "-4317"; repStart "1249"; chr1 rmsk exon 40433547 40434014 889 + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0012"; repClass "LTR"; repEnd "2036"; repFamily "ERVL"; repLeft "-3678"; repStart "1497"; chr1 rmsk exon 40434309 40434484 889 + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0012"; repClass "LTR"; repEnd "2211"; repFamily "ERVL"; repLeft "-3503"; repStart "2037"; chr1 rmsk exon 40434626 40434993 889 + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0012"; repClass "LTR"; repEnd "2674"; repFamily "ERVL"; repLeft "-3040"; repStart "2297"; chr1 rmsk exon 40435880 40436076 420 + . gene_id "ERVLB4_1p34.2a"; transcript_id "ERVLB4_1p34.2a"; locus "ERVLB4_1p34.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0012"; repClass "LTR"; repEnd "3072"; repFamily "ERVL"; repLeft "-2642"; repStart "2866"; ### ERVLE_1p34.2b ### chr1 rmsk gene 40841383 40843705 . - . gene_id "ERVLE_1p34.2b"; transcript_id "ERVLE_1p34.2b"; locus "ERVLE_1p34.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0057"; model_cov "1550"; model_pct "27.4"; chr1 rmsk exon 40841383 40841857 2691 - . gene_id "ERVLE_1p34.2b"; transcript_id "ERVLE_1p34.2b"; locus "ERVLE_1p34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0057"; repClass "LTR"; repEnd "5623"; repFamily "ERVL"; repLeft "5164"; repStart "-44"; chr1 rmsk exon 40842156 40842571 2691 - . gene_id "ERVLE_1p34.2b"; transcript_id "ERVLE_1p34.2b"; locus "ERVLE_1p34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0057"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "4736"; repStart "-504"; chr1 rmsk exon 40843054 40843134 2691 - . gene_id "ERVLE_1p34.2b"; transcript_id "ERVLE_1p34.2b"; locus "ERVLE_1p34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0057"; repClass "LTR"; repEnd "4735"; repFamily "ERVL"; repLeft "4658"; repStart "-932"; chr1 rmsk exon 40843127 40843705 2305 - . gene_id "ERVLE_1p34.2b"; transcript_id "ERVLE_1p34.2b"; locus "ERVLE_1p34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0057"; repClass "LTR"; repEnd "4299"; repFamily "ERVL"; repLeft "3712"; repStart "-1368"; ### ERVL_1p34.2 ### chr1 rmsk gene 41174282 41175563 . + . gene_id "ERVL_1p34.2"; transcript_id "ERVL_1p34.2"; locus "ERVL_1p34.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0007"; model_cov "788"; model_pct "13.7"; chr1 rmsk exon 41174282 41175035 4133 + . gene_id "ERVL_1p34.2"; transcript_id "ERVL_1p34.2"; locus "ERVL_1p34.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0007"; repClass "LTR"; repEnd "5752"; repFamily "ERVL"; repLeft "-5"; repStart "4964"; chr1 rmsk exon 41175039 41175563 2372 + . gene_id "ERVL_1p34.2"; transcript_id "ERVL_1p34.2"; locus "ERVL_1p34.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0007"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### ERVLE_1p34.2c ### chr1 rmsk gene 41436846 41441007 . + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0058"; model_cov "3025"; model_pct "53.4"; chr1 rmsk exon 41436846 41437026 331 + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0058"; repClass "LTR"; repEnd "974"; repFamily "ERVL"; repLeft "-4693"; repStart "775"; chr1 rmsk exon 41438085 41438215 301 + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0058"; repClass "LTR"; repEnd "1852"; repFamily "ERVL"; repLeft "-3815"; repStart "1711"; chr1 rmsk exon 41438229 41440257 3354 + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0058"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "-1604"; repStart "1882"; chr1 rmsk exon 41440267 41440607 1063 + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0058"; repClass "LTR"; repEnd "4637"; repFamily "ERVL"; repLeft "-1030"; repStart "4305"; chr1 rmsk exon 41440837 41441007 366 + . gene_id "ERVLE_1p34.2c"; transcript_id "ERVLE_1p34.2c"; locus "ERVLE_1p34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0058"; repClass "LTR"; repEnd "5273"; repFamily "ERVL"; repLeft "-394"; repStart "5101"; ### HERVW_1p34.2 ### chr1 rmsk gene 41944456 41950309 . + . gene_id "HERVW_1p34.2"; transcript_id "HERVW_1p34.2"; locus "HERVW_1p34.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0001"; model_cov "5570"; model_pct "64.6"; chr1 rmsk exon 41944456 41948886 38217 + . gene_id "HERVW_1p34.2"; transcript_id "HERVW_1p34.2"; locus "HERVW_1p34.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0001"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1566"; chr1 rmsk exon 41948879 41949987 9345 + . gene_id "HERVW_1p34.2"; transcript_id "HERVW_1p34.2"; locus "HERVW_1p34.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0001"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7509"; chr1 rmsk exon 41949988 41950309 2747 + . gene_id "HERVW_1p34.2"; transcript_id "HERVW_1p34.2"; locus "HERVW_1p34.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0001"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### ERV316A3_1p34.2a ### chr1 rmsk gene 41958113 41960712 . + . gene_id "ERV316A3_1p34.2a"; transcript_id "ERV316A3_1p34.2a"; locus "ERV316A3_1p34.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0021"; model_cov "2246"; model_pct "43.0"; chr1 rmsk exon 41958113 41960287 4142 + . gene_id "ERV316A3_1p34.2a"; transcript_id "ERV316A3_1p34.2a"; locus "ERV316A3_1p34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0021"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "-110"; repStart "2870"; chr1 rmsk exon 41960465 41960712 1115 + . gene_id "ERV316A3_1p34.2a"; transcript_id "ERV316A3_1p34.2a"; locus "ERV316A3_1p34.2a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0021"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-17"; repStart "185"; ### ERVLE_1p34.2d ### chr1 rmsk gene 42044766 42045351 . - . gene_id "ERVLE_1p34.2d"; transcript_id "ERVLE_1p34.2d"; locus "ERVLE_1p34.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0059"; model_cov "585"; model_pct "10.3"; chr1 rmsk exon 42044766 42045090 850 - . gene_id "ERVLE_1p34.2d"; transcript_id "ERVLE_1p34.2d"; locus "ERVLE_1p34.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0059"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "4848"; repStart "-462"; chr1 rmsk exon 42045131 42045351 478 - . gene_id "ERVLE_1p34.2d"; transcript_id "ERVLE_1p34.2d"; locus "ERVLE_1p34.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0059"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "4558"; repStart "-881"; ### HUERSP3B_1p34.2a ### chr1 rmsk gene 42503189 42509107 . - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0002"; model_cov "4326"; model_pct "58.3"; chr1 rmsk exon 42503189 42503827 3370 - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0002"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr1 rmsk exon 42503832 42503863 997 - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0002"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "7388"; repStart "-1"; chr1 rmsk exon 42504373 42504533 997 - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0002"; repClass "LTR"; repEnd "7387"; repFamily "ERV1"; repLeft "7219"; repStart "-31"; chr1 rmsk exon 42504902 42506936 28866 - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0002"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "4892"; repStart "-473"; chr1 rmsk exon 42507227 42509107 28866 - . gene_id "HUERSP3B_1p34.2a"; transcript_id "HUERSP3B_1p34.2a"; locus "HUERSP3B_1p34.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0002"; repClass "LTR"; repEnd "4891"; repFamily "ERV1"; repLeft "2815"; repStart "-2527"; ### HUERSP3B_1p34.2b ### chr1 rmsk gene 42509517 42513732 . - . gene_id "HUERSP3B_1p34.2b"; transcript_id "HUERSP3B_1p34.2b"; locus "HUERSP3B_1p34.2b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0003"; model_cov "2799"; model_pct "37.7"; chr1 rmsk exon 42509517 42510376 28866 - . gene_id "HUERSP3B_1p34.2b"; transcript_id "HUERSP3B_1p34.2b"; locus "HUERSP3B_1p34.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0003"; repClass "LTR"; repEnd "4891"; repFamily "ERV1"; repLeft "3940"; repStart "-2527"; chr1 rmsk exon 42510672 42511836 28866 - . gene_id "HUERSP3B_1p34.2b"; transcript_id "HUERSP3B_1p34.2b"; locus "HUERSP3B_1p34.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0003"; repClass "LTR"; repEnd "1862"; repFamily "ERV1"; repLeft "709"; repStart "-5556"; chr1 rmsk exon 42512347 42513070 28866 - . gene_id "HUERSP3B_1p34.2b"; transcript_id "HUERSP3B_1p34.2b"; locus "HUERSP3B_1p34.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0003"; repClass "LTR"; repEnd "708"; repFamily "ERV1"; repLeft "13"; repStart "-6710"; chr1 rmsk exon 42513094 42513732 3194 - . gene_id "HUERSP3B_1p34.2b"; transcript_id "HUERSP3B_1p34.2b"; locus "HUERSP3B_1p34.2b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0003"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_1p34.2e ### chr1 rmsk gene 42593987 42595931 . - . gene_id "ERVLE_1p34.2e"; transcript_id "ERVLE_1p34.2e"; locus "ERVLE_1p34.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0060"; model_cov "1050"; model_pct "18.5"; chr1 rmsk exon 42593987 42594226 351 - . gene_id "ERVLE_1p34.2e"; transcript_id "ERVLE_1p34.2e"; locus "ERVLE_1p34.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0060"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "5408"; repStart "-15"; chr1 rmsk exon 42594812 42595264 1699 - . gene_id "ERVLE_1p34.2e"; transcript_id "ERVLE_1p34.2e"; locus "ERVLE_1p34.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0060"; repClass "LTR"; repEnd "4746"; repFamily "ERVL"; repLeft "4325"; repStart "-921"; chr1 rmsk exon 42595574 42595931 1699 - . gene_id "ERVLE_1p34.2e"; transcript_id "ERVLE_1p34.2e"; locus "ERVLE_1p34.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0060"; repClass "LTR"; repEnd "4324"; repFamily "ERVL"; repLeft "3939"; repStart "-1343"; ### ERVLE_1p34.2f ### chr1 rmsk gene 42604350 42605878 . - . gene_id "ERVLE_1p34.2f"; transcript_id "ERVLE_1p34.2f"; locus "ERVLE_1p34.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0061"; model_cov "1281"; model_pct "22.6"; chr1 rmsk exon 42604350 42605488 2731 - . gene_id "ERVLE_1p34.2f"; transcript_id "ERVLE_1p34.2f"; locus "ERVLE_1p34.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0061"; repClass "LTR"; repEnd "2258"; repFamily "ERVL"; repLeft "1068"; repStart "-3409"; chr1 rmsk exon 42605787 42605878 2731 - . gene_id "ERVLE_1p34.2f"; transcript_id "ERVLE_1p34.2f"; locus "ERVLE_1p34.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0061"; repClass "LTR"; repEnd "1054"; repFamily "ERVL"; repLeft "963"; repStart "-4613"; ### ERVLE_1p34.2g ### chr1 rmsk gene 42609550 42610212 . - . gene_id "ERVLE_1p34.2g"; transcript_id "ERVLE_1p34.2g"; locus "ERVLE_1p34.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0062"; model_cov "748"; model_pct "13.2"; chr1 rmsk exon 42609550 42610212 549 - . gene_id "ERVLE_1p34.2g"; transcript_id "ERVLE_1p34.2g"; locus "ERVLE_1p34.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0062"; repClass "LTR"; repEnd "911"; repFamily "ERVL"; repLeft "163"; repStart "-4756"; ### HERVH_1p34.2a ### chr1 rmsk gene 42856712 42859884 . + . gene_id "HERVH_1p34.2a"; transcript_id "HERVH_1p34.2a"; locus "HERVH_1p34.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0017"; model_cov "2104"; model_pct "27.3"; chr1 rmsk exon 42856712 42857150 2863 + . gene_id "HERVH_1p34.2a"; transcript_id "HERVH_1p34.2a"; locus "HERVH_1p34.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0017"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr1 rmsk exon 42857171 42857609 948 + . gene_id "HERVH_1p34.2a"; transcript_id "HERVH_1p34.2a"; locus "HERVH_1p34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0017"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "17"; chr1 rmsk exon 42857723 42859436 3743 + . gene_id "HERVH_1p34.2a"; transcript_id "HERVH_1p34.2a"; locus "HERVH_1p34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0017"; repClass "LTR"; repEnd "3324"; repFamily "ERV1"; repLeft "-4389"; repStart "1649"; chr1 rmsk exon 42859447 42859884 2884 + . gene_id "HERVH_1p34.2a"; transcript_id "HERVH_1p34.2a"; locus "HERVH_1p34.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0017"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p34.2 ### chr1 rmsk gene 42866266 42870243 . + . gene_id "HERVL_1p34.2"; transcript_id "HERVL_1p34.2"; locus "HERVL_1p34.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0010"; model_cov "3550"; model_pct "62.8"; chr1 rmsk exon 42866266 42869799 28564 + . gene_id "HERVL_1p34.2"; transcript_id "HERVL_1p34.2"; locus "HERVL_1p34.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0010"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2104"; chr1 rmsk exon 42869800 42870243 3673 + . gene_id "HERVL_1p34.2"; transcript_id "HERVL_1p34.2"; locus "HERVL_1p34.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0010"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_1p34.2b ### chr1 rmsk gene 42904887 42912582 . - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0013"; model_cov "5713"; model_pct "100.0"; chr1 rmsk exon 42904887 42905199 2116 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "471"; repFamily "ERVL"; repLeft "167"; repStart "-44"; chr1 rmsk exon 42905507 42905714 2116 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "-37"; repStart "-349"; chr1 rmsk exon 42905715 42908155 14731 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3276"; repStart "0"; chr1 rmsk exon 42908467 42910296 16014 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "1351"; repStart "-2437"; chr1 rmsk exon 42910585 42912015 16014 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "1350"; repFamily "ERVL"; repLeft "1"; repStart "-4364"; chr1 rmsk exon 42912016 42912582 2472 - . gene_id "ERVLB4_1p34.2b"; transcript_id "ERVLB4_1p34.2b"; locus "ERVLB4_1p34.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0013"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1p34.2b ### chr1 rmsk gene 43042735 43046910 . + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0022"; model_cov "2324"; model_pct "44.5"; chr1 rmsk exon 43042735 43043073 1308 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "64"; chr1 rmsk exon 43043097 43043388 524 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "-4885"; repStart "57"; chr1 rmsk exon 43043392 43043609 963 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "2096"; repFamily "ERVL"; repLeft "-3130"; repStart "1894"; chr1 rmsk exon 43044622 43045844 3845 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "3447"; repFamily "ERVL"; repLeft "-1779"; repStart "2233"; chr1 rmsk exon 43045859 43046402 1914 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "4547"; repFamily "ERVL"; repLeft "-679"; repStart "4039"; chr1 rmsk exon 43046424 43046544 480 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "-57"; repStart "5053"; chr1 rmsk exon 43046568 43046910 806 + . gene_id "ERV316A3_1p34.2b"; transcript_id "ERV316A3_1p34.2b"; locus "ERV316A3_1p34.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0022"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "-39"; repStart "1"; ### ERVLE_1p34.2h ### chr1 rmsk gene 43074451 43077244 . - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0063"; model_cov "1483"; model_pct "26.2"; chr1 rmsk exon 43074451 43074951 1813 - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0063"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "2498"; repStart "-2676"; chr1 rmsk exon 43074960 43075283 1314 - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0063"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "857"; repStart "-4484"; chr1 rmsk exon 43076292 43076672 1314 - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0063"; repClass "LTR"; repEnd "856"; repFamily "ERVL"; repLeft "470"; repStart "-4811"; chr1 rmsk exon 43076721 43076890 439 - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0063"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "238"; repStart "-5253"; chr1 rmsk exon 43077141 43077244 406 - . gene_id "ERVLE_1p34.2h"; transcript_id "ERVLE_1p34.2h"; locus "ERVLE_1p34.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0063"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "109"; repStart "-5456"; ### MER101_1p34.2 ### chr1 rmsk gene 43083854 43085014 . - . gene_id "MER101_1p34.2"; transcript_id "MER101_1p34.2"; locus "MER101_1p34.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0009"; model_cov "843"; model_pct "12.7"; chr1 rmsk exon 43083854 43084260 2244 - . gene_id "MER101_1p34.2"; transcript_id "MER101_1p34.2"; locus "MER101_1p34.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0009"; repClass "LTR"; repEnd "2273"; repFamily "ERV1"; repLeft "1821"; repStart "-4366"; chr1 rmsk exon 43084565 43085014 2244 - . gene_id "MER101_1p34.2"; transcript_id "MER101_1p34.2"; locus "MER101_1p34.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0009"; repClass "LTR"; repEnd "1820"; repFamily "ERV1"; repLeft "1429"; repStart "-4819"; ### HERVH_1p34.2b ### chr1 rmsk gene 43085534 43091157 . + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0018"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 43085534 43085921 2525 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 43085924 43088908 21033 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 43088903 43089050 855 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 43089041 43089545 3789 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 43089548 43090178 4244 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 43090180 43090396 1414 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 43090395 43090773 2466 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 43090774 43091157 2630 + . gene_id "HERVH_1p34.2b"; transcript_id "HERVH_1p34.2b"; locus "HERVH_1p34.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0018"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_1p34.2i ### chr1 rmsk gene 43467473 43469790 . - . gene_id "ERVLE_1p34.2i"; transcript_id "ERVLE_1p34.2i"; locus "ERVLE_1p34.2i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0065"; model_cov "749"; model_pct "13.2"; chr1 rmsk exon 43467473 43467897 1885 - . gene_id "ERVLE_1p34.2i"; transcript_id "ERVLE_1p34.2i"; locus "ERVLE_1p34.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0065"; repClass "LTR"; repEnd "4992"; repFamily "ERVL"; repLeft "4503"; repStart "-675"; chr1 rmsk exon 43469533 43469790 1885 - . gene_id "ERVLE_1p34.2i"; transcript_id "ERVLE_1p34.2i"; locus "ERVLE_1p34.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0065"; repClass "LTR"; repEnd "4502"; repFamily "ERVL"; repLeft "4242"; repStart "-1165"; ### ERVLB4_1p34.2c ### chr1 rmsk gene 43469877 43472738 . - . gene_id "ERVLB4_1p34.2c"; transcript_id "ERVLB4_1p34.2c"; locus "ERVLB4_1p34.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0014"; model_cov "2147"; model_pct "37.6"; chr1 rmsk exon 43469877 43471318 3011 - . gene_id "ERVLB4_1p34.2c"; transcript_id "ERVLB4_1p34.2c"; locus "ERVLB4_1p34.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0014"; repClass "LTR"; repEnd "2879"; repFamily "ERVL"; repLeft "1362"; repStart "-2835"; chr1 rmsk exon 43472110 43472738 375 - . gene_id "ERVLB4_1p34.2c"; transcript_id "ERVLB4_1p34.2c"; locus "ERVLB4_1p34.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0014"; repClass "LTR"; repEnd "707"; repFamily "ERVL"; repLeft "77"; repStart "-5007"; ### MER4_1p34.1a ### chr1 rmsk gene 44173127 44181125 . - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0011"; model_cov "5121"; model_pct "77.6"; chr1 rmsk exon 44173127 44173584 2997 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0011"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 44173590 44175121 15638 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "5010"; repStart "-1"; chr1 rmsk exon 44175430 44176414 15638 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "5009"; repFamily "ERV1"; repLeft "4006"; repStart "-1589"; chr1 rmsk exon 44176708 44176879 15638 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "3837"; repStart "-2593"; chr1 rmsk exon 44176888 44177163 2995 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "2399"; repFamily "ERV1"; repLeft "2220"; repStart "-4199"; chr1 rmsk exon 44177456 44179042 3952 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "2219"; repFamily "ERV1"; repLeft "700"; repStart "-4379"; chr1 rmsk exon 44179328 44179662 3952 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "1554"; repFamily "ERV1"; repLeft "1235"; repStart "-5044"; chr1 rmsk exon 44180071 44180298 1704 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "93"; repStart "-6250"; chr1 rmsk exon 44180599 44180685 1704 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0011"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "1"; repStart "-6506"; chr1 rmsk exon 44180688 44181125 2842 - . gene_id "MER4_1p34.1a"; transcript_id "MER4_1p34.1a"; locus "MER4_1p34.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0011"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_1p34.1 ### chr1 rmsk gene 44182783 44186173 . - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0011"; model_cov "1713"; model_pct "25.8"; chr1 rmsk exon 44182783 44183168 1562 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0011"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "56"; repStart "-19"; chr1 rmsk exon 44183467 44183524 1562 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0011"; repClass "LTR"; repEnd "55"; repFamily "ERV1"; repLeft "1"; repStart "-390"; chr1 rmsk exon 44183701 44183949 1468 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0011"; repClass "LTR"; repEnd "6622"; repFamily "ERV1"; repLeft "6383"; repStart "-17"; chr1 rmsk exon 44184238 44184580 1468 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0011"; repClass "LTR"; repEnd "6382"; repFamily "ERV1"; repLeft "6025"; repStart "-257"; chr1 rmsk exon 44185263 44185355 335 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0011"; repClass "LTR"; repEnd "5887"; repFamily "ERV1"; repLeft "5789"; repStart "-752"; chr1 rmsk exon 44185602 44186173 2134 - . gene_id "MER101_1p34.1"; transcript_id "MER101_1p34.1"; locus "MER101_1p34.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0011"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "3610"; repStart "-2010"; ### ERV316A3_1p34.1a ### chr1 rmsk gene 44370793 44374424 . + . gene_id "ERV316A3_1p34.1a"; transcript_id "ERV316A3_1p34.1a"; locus "ERV316A3_1p34.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0024"; model_cov "1995"; model_pct "38.2"; chr1 rmsk exon 44370793 44372016 4907 + . gene_id "ERV316A3_1p34.1a"; transcript_id "ERV316A3_1p34.1a"; locus "ERV316A3_1p34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0024"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "-756"; repStart "3186"; chr1 rmsk exon 44372962 44373642 2435 + . gene_id "ERV316A3_1p34.1a"; transcript_id "ERV316A3_1p34.1a"; locus "ERV316A3_1p34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0024"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-20"; repStart "4495"; chr1 rmsk exon 44374012 44374424 1759 + . gene_id "ERV316A3_1p34.1a"; transcript_id "ERV316A3_1p34.1a"; locus "ERV316A3_1p34.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0024"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "22"; ### MER41_1p34.1a ### chr1 rmsk gene 44888116 44889253 . + . gene_id "MER41_1p34.1a"; transcript_id "MER41_1p34.1a"; locus "MER41_1p34.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0006"; model_cov "1251"; model_pct "21.0"; chr1 rmsk exon 44888116 44888473 6236 + . gene_id "MER41_1p34.1a"; transcript_id "MER41_1p34.1a"; locus "MER41_1p34.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0006"; repClass "LTR"; repEnd "1087"; repFamily "ERV1"; repLeft "-4859"; repStart "723"; chr1 rmsk exon 44888503 44889253 6236 + . gene_id "MER41_1p34.1a"; transcript_id "MER41_1p34.1a"; locus "MER41_1p34.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0006"; repClass "LTR"; repEnd "1975"; repFamily "ERV1"; repLeft "-3971"; repStart "1088"; ### MER41_1p34.1b ### chr1 rmsk gene 44889829 44890622 . + . gene_id "MER41_1p34.1b"; transcript_id "MER41_1p34.1b"; locus "MER41_1p34.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0007"; model_cov "823"; model_pct "13.8"; chr1 rmsk exon 44889829 44889863 282 + . gene_id "MER41_1p34.1b"; transcript_id "MER41_1p34.1b"; locus "MER41_1p34.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0007"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-4908"; repStart "1004"; chr1 rmsk exon 44889860 44889988 940 + . gene_id "MER41_1p34.1b"; transcript_id "MER41_1p34.1b"; locus "MER41_1p34.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0007"; repClass "LTR"; repEnd "1318"; repFamily "ERV1"; repLeft "-4628"; repStart "1190"; chr1 rmsk exon 44889989 44890622 4359 + . gene_id "MER41_1p34.1b"; transcript_id "MER41_1p34.1b"; locus "MER41_1p34.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0007"; repClass "LTR"; repEnd "3066"; repFamily "ERV1"; repLeft "-2880"; repStart "2405"; ### ERV316A3_1p34.1b ### chr1 rmsk gene 45212384 45217042 . - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0026"; model_cov "3075"; model_pct "58.8"; chr1 rmsk exon 45212384 45212795 1474 - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0026"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "1"; repStart "-31"; chr1 rmsk exon 45212796 45213705 7145 - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0026"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4319"; repStart "0"; chr1 rmsk exon 45214072 45215888 7145 - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0026"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "2452"; repStart "-908"; chr1 rmsk exon 45216366 45216694 1174 - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0026"; repClass "LTR"; repEnd "2438"; repFamily "ERVL"; repLeft "2136"; repStart "-2788"; chr1 rmsk exon 45216740 45217042 798 - . gene_id "ERV316A3_1p34.1b"; transcript_id "ERV316A3_1p34.1b"; locus "ERV316A3_1p34.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0026"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "2"; repStart "-93"; ### ERVLE_1p34.1a ### chr1 rmsk gene 45226689 45229003 . - . gene_id "ERVLE_1p34.1a"; transcript_id "ERVLE_1p34.1a"; locus "ERVLE_1p34.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0070"; model_cov "1741"; model_pct "30.7"; chr1 rmsk exon 45226689 45227384 981 - . gene_id "ERVLE_1p34.1a"; transcript_id "ERVLE_1p34.1a"; locus "ERVLE_1p34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0070"; repClass "LTR"; repEnd "2379"; repFamily "ERVL"; repLeft "1531"; repStart "-3288"; chr1 rmsk exon 45227766 45228421 1275 - . gene_id "ERVLE_1p34.1a"; transcript_id "ERVLE_1p34.1a"; locus "ERVLE_1p34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0070"; repClass "LTR"; repEnd "1517"; repFamily "ERVL"; repLeft "831"; repStart "-4150"; chr1 rmsk exon 45228801 45229003 1275 - . gene_id "ERVLE_1p34.1a"; transcript_id "ERVLE_1p34.1a"; locus "ERVLE_1p34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0070"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "623"; repStart "-4837"; ### ERVLE_1p34.1b ### chr1 rmsk gene 45246256 45250095 . + . gene_id "ERVLE_1p34.1b"; transcript_id "ERVLE_1p34.1b"; locus "ERVLE_1p34.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0071"; model_cov "1517"; model_pct "26.8"; chr1 rmsk exon 45246256 45246376 672 + . gene_id "ERVLE_1p34.1b"; transcript_id "ERVLE_1p34.1b"; locus "ERVLE_1p34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0071"; repClass "LTR"; repEnd "1369"; repFamily "ERVL"; repLeft "-4298"; repStart "1163"; chr1 rmsk exon 45246741 45246969 677 + . gene_id "ERVLE_1p34.1b"; transcript_id "ERVLE_1p34.1b"; locus "ERVLE_1p34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0071"; repClass "LTR"; repEnd "2775"; repFamily "ERVL"; repLeft "-2892"; repStart "2551"; chr1 rmsk exon 45248556 45248740 730 + . gene_id "ERVLE_1p34.1b"; transcript_id "ERVLE_1p34.1b"; locus "ERVLE_1p34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0071"; repClass "LTR"; repEnd "3033"; repFamily "ERVL"; repLeft "-2634"; repStart "2797"; chr1 rmsk exon 45249330 45250095 1313 + . gene_id "ERVLE_1p34.1b"; transcript_id "ERVLE_1p34.1b"; locus "ERVLE_1p34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0071"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "-1832"; repStart "2984"; ### MER4_1p34.1c ### chr1 rmsk gene 45305213 45315797 . + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; category "opposite*"; intModel "MER4-int"; locid "MER4-int_0012"; model_cov "4709"; model_pct "71.4"; chr1 rmsk exon 45305213 45305647 3153 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0012"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "15"; chr1 rmsk exon 45305651 45307087 4210 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "-5573"; repStart "-159"; chr1 rmsk exon 45307090 45307784 4086 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr1 rmsk exon 45308324 45308352 1944 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "2758"; repFamily "ERV1"; repLeft "-3840"; repStart "2730"; chr1 rmsk exon 45308596 45308971 1944 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "-3455"; repStart "2759"; chr1 rmsk exon 45309292 45309346 1944 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "3214"; repFamily "ERV1"; repLeft "-3384"; repStart "3144"; chr1 rmsk exon 45309587 45310030 13361 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "4415"; repFamily "ERV1"; repLeft "-2183"; repStart "3960"; chr1 rmsk exon 45310333 45311405 13361 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "-1074"; repStart "4416"; chr1 rmsk exon 45311700 45312079 13361 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "5896"; repFamily "ERV1"; repLeft "-702"; repStart "5525"; chr1 rmsk exon 45312389 45312572 13361 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "6079"; repFamily "ERV1"; repLeft "-519"; repStart "5897"; chr1 rmsk exon 45312881 45313065 13361 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; repClass "LTR"; repEnd "6276"; repFamily "ERV1"; repLeft "-322"; repStart "6080"; chr1 rmsk exon 45313065 45313242 1471 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "3261"; repFamily "ERV1"; repLeft "3046"; repStart "-3337"; chr1 rmsk exon 45313538 45313548 1471 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "3045"; repFamily "ERV1"; repLeft "3044"; repStart "-3553"; chr1 rmsk exon 45314144 45314437 1471 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "3043"; repFamily "ERV1"; repLeft "2737"; repStart "-3555"; chr1 rmsk exon 45314628 45314803 1094 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "2489"; repFamily "ERV1"; repLeft "2327"; repStart "-4109"; chr1 rmsk exon 45315084 45315464 1820 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "2160"; repFamily "ERV1"; repLeft "1799"; repStart "-4438"; chr1 rmsk exon 45315762 45315797 1820 + . gene_id "MER4_1p34.1c"; transcript_id "MER4_1p34.1c"; locus "MER4_1p34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0012"; prev_strand "-"; repClass "LTR"; repEnd "1798"; repFamily "ERV1"; repLeft "1763"; repStart "-4800"; ### HERVH_1p34.1 ### chr1 rmsk gene 45315974 45320483 . + . gene_id "HERVH_1p34.1"; transcript_id "HERVH_1p34.1"; locus "HERVH_1p34.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0019"; model_cov "4511"; model_pct "58.5"; chr1 rmsk exon 45315974 45316348 2015 + . gene_id "HERVH_1p34.1"; transcript_id "HERVH_1p34.1"; locus "HERVH_1p34.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0019"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 45316349 45319557 9849 + . gene_id "HERVH_1p34.1"; transcript_id "HERVH_1p34.1"; locus "HERVH_1p34.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0019"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "1"; chr1 rmsk exon 45319546 45320287 3093 + . gene_id "HERVH_1p34.1"; transcript_id "HERVH_1p34.1"; locus "HERVH_1p34.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0019"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "-3184"; repStart "3800"; chr1 rmsk exon 45320288 45320483 1041 + . gene_id "HERVH_1p34.1"; transcript_id "HERVH_1p34.1"; locus "HERVH_1p34.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0019"; repClass "LTR"; repEnd "6685"; repFamily "ERV1"; repLeft "-1028"; repStart "6489"; ### MER4_1p34.1b ### chr1 rmsk gene 45320709 45321542 . - . gene_id "MER4_1p34.1b"; transcript_id "MER4_1p34.1b"; locus "MER4_1p34.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0014"; model_cov "793"; model_pct "12.0"; chr1 rmsk exon 45320709 45321396 3319 - . gene_id "MER4_1p34.1b"; transcript_id "MER4_1p34.1b"; locus "MER4_1p34.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0014"; repClass "LTR"; repEnd "1721"; repFamily "ERV1"; repLeft "993"; repStart "-4877"; chr1 rmsk exon 45321474 45321542 254 - . gene_id "MER4_1p34.1b"; transcript_id "MER4_1p34.1b"; locus "MER4_1p34.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0014"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "685"; repStart "-5848"; ### MER61_1p34.1a ### chr1 rmsk gene 45573148 45575575 . - . gene_id "MER61_1p34.1a"; transcript_id "MER61_1p34.1a"; locus "MER61_1p34.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0002"; model_cov "1599"; model_pct "30.6"; chr1 rmsk exon 45573148 45573440 1529 - . gene_id "MER61_1p34.1a"; transcript_id "MER61_1p34.1a"; locus "MER61_1p34.1a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0002"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr1 rmsk exon 45573441 45574886 7350 - . gene_id "MER61_1p34.1a"; transcript_id "MER61_1p34.1a"; locus "MER61_1p34.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0002"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3663"; repStart "0"; chr1 rmsk exon 45575181 45575575 7350 - . gene_id "MER61_1p34.1a"; transcript_id "MER61_1p34.1a"; locus "MER61_1p34.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0002"; repClass "LTR"; repEnd "3662"; repFamily "ERV1"; repLeft "3617"; repStart "-1555"; ### MER61_1p34.1b ### chr1 rmsk gene 45575881 45580362 . - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0003"; model_cov "1753"; model_pct "33.6"; chr1 rmsk exon 45575881 45576139 5452 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "4275"; repFamily "ERV1"; repLeft "4023"; repStart "-942"; chr1 rmsk exon 45577531 45577611 6793 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "3096"; repFamily "ERV1"; repLeft "3043"; repStart "-2121"; chr1 rmsk exon 45577927 45577966 6793 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "3042"; repFamily "ERV1"; repLeft "3014"; repStart "-2175"; chr1 rmsk exon 45578251 45579178 6793 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "3013"; repFamily "ERV1"; repLeft "2075"; repStart "-2204"; chr1 rmsk exon 45579368 45579437 2270 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "1709"; repFamily "ERV1"; repLeft "1650"; repStart "-3508"; chr1 rmsk exon 45579734 45579840 2270 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1542"; repStart "-3568"; chr1 rmsk exon 45580148 45580362 2270 - . gene_id "MER61_1p34.1b"; transcript_id "MER61_1p34.1b"; locus "MER61_1p34.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0003"; repClass "LTR"; repEnd "1541"; repFamily "ERV1"; repLeft "1225"; repStart "-3676"; ### ERVLB4_1p34.1 ### chr1 rmsk gene 46073148 46076202 . - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0016"; model_cov "1591"; model_pct "27.8"; chr1 rmsk exon 46073148 46073623 7813 - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0016"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "1124"; repStart "-4116"; chr1 rmsk exon 46073934 46074008 7813 - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0016"; repClass "LTR"; repEnd "1123"; repFamily "ERVL"; repLeft "1060"; repStart "-4591"; chr1 rmsk exon 46074317 46075333 7813 - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0016"; repClass "LTR"; repEnd "1059"; repFamily "ERVL"; repLeft "33"; repStart "-4655"; chr1 rmsk exon 46075636 46075668 7813 - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0016"; repClass "LTR"; repEnd "32"; repFamily "ERVL"; repLeft "4"; repStart "-5682"; chr1 rmsk exon 46075671 46076202 2849 - . gene_id "ERVLB4_1p34.1"; transcript_id "ERVLB4_1p34.1"; locus "ERVLB4_1p34.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0016"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HARLEQUIN_1p33 ### chr1 rmsk gene 46325548 46332557 . - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0008"; model_cov "5038"; model_pct "73.1"; chr1 rmsk exon 46325548 46326039 4082 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 46326040 46329561 23562 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr1 rmsk exon 46329561 46329755 1354 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "2380"; repStart "-4322"; chr1 rmsk exon 46330516 46330897 2430 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "1974"; repFamily "ERV1"; repLeft "1572"; repStart "-4922"; chr1 rmsk exon 46330884 46330937 5536 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "858"; repStart "-5996"; chr1 rmsk exon 46331236 46332068 5536 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "857"; repFamily "ERV1"; repLeft "1"; repStart "-6039"; chr1 rmsk exon 46332069 46332557 4042 - . gene_id "HARLEQUIN_1p33"; transcript_id "HARLEQUIN_1p33"; locus "HARLEQUIN_1p33"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0008"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_1p33a ### chr1 rmsk gene 46383762 46385780 . - . gene_id "HERVIP10FH_1p33a"; transcript_id "HERVIP10FH_1p33a"; locus "HERVIP10FH_1p33a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0006"; model_cov "1522"; model_pct "29.8"; chr1 rmsk exon 46383762 46384253 3425 - . gene_id "HERVIP10FH_1p33a"; transcript_id "HERVIP10FH_1p33a"; locus "HERVIP10FH_1p33a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0006"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr1 rmsk exon 46384257 46384622 3002 - . gene_id "HERVIP10FH_1p33a"; transcript_id "HERVIP10FH_1p33a"; locus "HERVIP10FH_1p33a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0006"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "4735"; repStart "0"; chr1 rmsk exon 46384634 46385780 8303 - . gene_id "HERVIP10FH_1p33a"; transcript_id "HERVIP10FH_1p33a"; locus "HERVIP10FH_1p33a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0006"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1933"; repStart "-2014"; ### HERVW_1p33a ### chr1 rmsk gene 46385782 46391326 . - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0002"; model_cov "4435"; model_pct "51.4"; chr1 rmsk exon 46385782 46386104 2755 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr1 rmsk exon 46386109 46386394 2348 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "8335"; repStart "-5"; chr1 rmsk exon 46386385 46386423 250 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr1 rmsk exon 46386419 46389156 24401 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "3277"; repStart "-2609"; chr1 rmsk exon 46389459 46390791 24401 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "3283"; repFamily "ERV1"; repLeft "1953"; repStart "-5343"; chr1 rmsk exon 46390780 46390821 261 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "2"; repStart "-8583"; chr1 rmsk exon 46390822 46391326 3616 - . gene_id "HERVW_1p33a"; transcript_id "HERVW_1p33a"; locus "HERVW_1p33a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0002"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "253"; repStart "0"; ### HERVIP10FH_1p33b ### chr1 rmsk gene 46391343 46393974 . - . gene_id "HERVIP10FH_1p33b"; transcript_id "HERVIP10FH_1p33b"; locus "HERVIP10FH_1p33b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0007"; model_cov "1688"; model_pct "33.1"; chr1 rmsk exon 46391343 46392209 7597 - . gene_id "HERVIP10FH_1p33b"; transcript_id "HERVIP10FH_1p33b"; locus "HERVIP10FH_1p33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0007"; repClass "LTR"; repEnd "1810"; repFamily "ERV1"; repLeft "939"; repStart "-3292"; chr1 rmsk exon 46392513 46392788 7597 - . gene_id "HERVIP10FH_1p33b"; transcript_id "HERVIP10FH_1p33b"; locus "HERVIP10FH_1p33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0007"; repClass "LTR"; repEnd "938"; repFamily "ERV1"; repLeft "625"; repStart "-4164"; chr1 rmsk exon 46392896 46393166 502 - . gene_id "HERVIP10FH_1p33b"; transcript_id "HERVIP10FH_1p33b"; locus "HERVIP10FH_1p33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0007"; repClass "LTR"; repEnd "-3084"; repFamily "ERV1"; repLeft "-3588"; repStart "-8186"; chr1 rmsk exon 46393504 46393974 2985 - . gene_id "HERVIP10FH_1p33b"; transcript_id "HERVIP10FH_1p33b"; locus "HERVIP10FH_1p33b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0007"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_1p33a ### chr1 rmsk gene 46771192 46774760 . + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0015"; model_cov "2419"; model_pct "36.7"; chr1 rmsk exon 46771192 46771670 3660 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0015"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 46771674 46772188 2596 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "-1197"; repFamily "ERV1"; repLeft "-7795"; repStart "-1671"; chr1 rmsk exon 46772223 46772304 367 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "-644"; repFamily "ERV1"; repLeft "-7242"; repStart "-722"; chr1 rmsk exon 46772400 46772662 1300 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "2391"; repFamily "ERV1"; repLeft "-4207"; repStart "2118"; chr1 rmsk exon 46772665 46773396 2230 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "866"; repFamily "ERV1"; repLeft "-5732"; repStart "372"; chr1 rmsk exon 46773391 46773914 6587 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "5084"; repFamily "ERV1"; repLeft "-1514"; repStart "4543"; chr1 rmsk exon 46774221 46774760 6587 + . gene_id "MER4_1p33a"; transcript_id "MER4_1p33a"; locus "MER4_1p33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0015"; repClass "LTR"; repEnd "5644"; repFamily "ERV1"; repLeft "-954"; repStart "5085"; ### MER4_1p33b ### chr1 rmsk gene 46774779 46775748 . - . gene_id "MER4_1p33b"; transcript_id "MER4_1p33b"; locus "MER4_1p33b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0016"; model_cov "981"; model_pct "14.9"; chr1 rmsk exon 46774779 46775748 5768 - . gene_id "MER4_1p33b"; transcript_id "MER4_1p33b"; locus "MER4_1p33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0016"; repClass "LTR"; repEnd "5121"; repFamily "ERV1"; repLeft "4140"; repStart "-1477"; ### MER4_1p33c ### chr1 rmsk gene 46784143 46785370 . - . gene_id "MER4_1p33c"; transcript_id "MER4_1p33c"; locus "MER4_1p33c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0017"; model_cov "1378"; model_pct "20.9"; chr1 rmsk exon 46784143 46784466 1881 - . gene_id "MER4_1p33c"; transcript_id "MER4_1p33c"; locus "MER4_1p33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0017"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "3837"; repStart "-2441"; chr1 rmsk exon 46784466 46785370 13598 - . gene_id "MER4_1p33c"; transcript_id "MER4_1p33c"; locus "MER4_1p33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0017"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2623"; repStart "-2917"; ### MER4_1p33d ### chr1 rmsk gene 46785598 46788568 . - . gene_id "MER4_1p33d"; transcript_id "MER4_1p33d"; locus "MER4_1p33d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0018"; model_cov "2618"; model_pct "39.7"; chr1 rmsk exon 46785598 46786465 13598 - . gene_id "MER4_1p33d"; transcript_id "MER4_1p33d"; locus "MER4_1p33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0018"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2664"; repStart "-2917"; chr1 rmsk exon 46786750 46788278 13598 - . gene_id "MER4_1p33d"; transcript_id "MER4_1p33d"; locus "MER4_1p33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0018"; repClass "LTR"; repEnd "1604"; repFamily "ERV1"; repLeft "3"; repStart "-4994"; chr1 rmsk exon 46788283 46788568 1986 - . gene_id "MER4_1p33d"; transcript_id "MER4_1p33d"; locus "MER4_1p33d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0018"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "188"; repStart "0"; ### HUERSP3B_1p33a ### chr1 rmsk gene 46874045 46877756 . + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0004"; model_cov "4182"; model_pct "56.4"; chr1 rmsk exon 46874045 46876129 6179 + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0004"; repClass "LTR"; repEnd "1780"; repFamily "ERV1"; repLeft "-5638"; repStart "-705"; chr1 rmsk exon 46876126 46876269 681 + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0004"; repClass "LTR"; repEnd "3181"; repFamily "ERV1"; repLeft "-4237"; repStart "3038"; chr1 rmsk exon 46876271 46876918 3991 + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0004"; repClass "LTR"; repEnd "4076"; repFamily "ERV1"; repLeft "-3342"; repStart "3400"; chr1 rmsk exon 46876904 46877643 4015 + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0004"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "-2007"; repStart "4661"; chr1 rmsk exon 46877655 46877756 383 + . gene_id "HUERSP3B_1p33a"; transcript_id "HUERSP3B_1p33a"; locus "HUERSP3B_1p33a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0004"; repClass "LTR"; repEnd "5473"; repFamily "ERV1"; repLeft "-1945"; repStart "5345"; ### HERVK11_1p33 ### chr1 rmsk gene 46900689 46908072 . + . gene_id "HERVK11_1p33"; transcript_id "HERVK11_1p33"; locus "HERVK11_1p33"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0002"; model_cov "5425"; model_pct "68.2"; chr1 rmsk exon 46900689 46901761 6769 + . gene_id "HERVK11_1p33"; transcript_id "HERVK11_1p33"; locus "HERVK11_1p33"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0002"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 46901768 46904716 22914 + . gene_id "HERVK11_1p33"; transcript_id "HERVK11_1p33"; locus "HERVK11_1p33"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0002"; repClass "LTR"; repEnd "2964"; repFamily "ERVK"; repLeft "-4989"; repStart "5"; chr1 rmsk exon 46904737 46906998 10519 + . gene_id "HERVK11_1p33"; transcript_id "HERVK11_1p33"; locus "HERVK11_1p33"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0002"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5487"; chr1 rmsk exon 46906999 46908072 4891 + . gene_id "HERVK11_1p33"; transcript_id "HERVK11_1p33"; locus "HERVK11_1p33"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0002"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "196"; ### HERVW_1p33b ### chr1 rmsk gene 46946602 46948076 . + . gene_id "HERVW_1p33b"; transcript_id "HERVW_1p33b"; locus "HERVW_1p33b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0003"; model_cov "1312"; model_pct "15.2"; chr1 rmsk exon 46946602 46946921 2352 + . gene_id "HERVW_1p33b"; transcript_id "HERVW_1p33b"; locus "HERVW_1p33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0003"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-7939"; repStart "380"; chr1 rmsk exon 46947086 46948076 7353 + . gene_id "HERVW_1p33b"; transcript_id "HERVW_1p33b"; locus "HERVW_1p33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0003"; repClass "LTR"; repEnd "1803"; repFamily "ERV1"; repLeft "-6823"; repStart "798"; ### HERVW_1p33c ### chr1 rmsk gene 46951891 46958907 . + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0004"; model_cov "7889"; model_pct "91.5"; chr1 rmsk exon 46951891 46952393 3334 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr1 rmsk exon 46952394 46953092 5262 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-7939"; repStart "1"; chr1 rmsk exon 46953257 46954317 7762 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "-6762"; repStart "798"; chr1 rmsk exon 46954315 46954650 2287 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "1679"; chr1 rmsk exon 46954634 46958267 28675 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "548"; chr1 rmsk exon 46958261 46958299 306 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr1 rmsk exon 46958290 46958582 2283 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr1 rmsk exon 46958583 46958907 2663 + . gene_id "HERVW_1p33c"; transcript_id "HERVW_1p33c"; locus "HERVW_1p33c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0004"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HUERSP3B_1p33b ### chr1 rmsk gene 47090170 47093881 . - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0005"; model_cov "4182"; model_pct "56.4"; chr1 rmsk exon 47090170 47090271 361 - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0005"; repClass "LTR"; repEnd "5473"; repFamily "ERV1"; repLeft "5345"; repStart "-1945"; chr1 rmsk exon 47090283 47091022 3992 - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0005"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "4661"; repStart "-2007"; chr1 rmsk exon 47091008 47091655 3996 - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0005"; repClass "LTR"; repEnd "4076"; repFamily "ERV1"; repLeft "3400"; repStart "-3342"; chr1 rmsk exon 47091657 47091801 653 - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0005"; repClass "LTR"; repEnd "3181"; repFamily "ERV1"; repLeft "3038"; repStart "-4237"; chr1 rmsk exon 47091798 47093881 6119 - . gene_id "HUERSP3B_1p33b"; transcript_id "HUERSP3B_1p33b"; locus "HUERSP3B_1p33b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0005"; repClass "LTR"; repEnd "1780"; repFamily "ERV1"; repLeft "-705"; repStart "-5638"; ### HERVW_1p33d ### chr1 rmsk gene 47129814 47131292 . - . gene_id "HERVW_1p33d"; transcript_id "HERVW_1p33d"; locus "HERVW_1p33d"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0005"; model_cov "1307"; model_pct "15.2"; chr1 rmsk exon 47129814 47130813 7501 - . gene_id "HERVW_1p33d"; transcript_id "HERVW_1p33d"; locus "HERVW_1p33d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0005"; repClass "LTR"; repEnd "1803"; repFamily "ERV1"; repLeft "798"; repStart "-6823"; chr1 rmsk exon 47130978 47131292 2296 - . gene_id "HERVW_1p33d"; transcript_id "HERVW_1p33d"; locus "HERVW_1p33d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0005"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "385"; repStart "-7939"; ### ERVLB4_1p33 ### chr1 rmsk gene 47807138 47808402 . + . gene_id "ERVLB4_1p33"; transcript_id "ERVLB4_1p33"; locus "ERVLB4_1p33"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0018"; model_cov "829"; model_pct "14.5"; chr1 rmsk exon 47807138 47807955 4638 + . gene_id "ERVLB4_1p33"; transcript_id "ERVLB4_1p33"; locus "ERVLB4_1p33"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0018"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4885"; chr1 rmsk exon 47807956 47808402 1944 + . gene_id "ERVLB4_1p33"; transcript_id "ERVLB4_1p33"; locus "ERVLB4_1p33"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0018"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_1p33a ### chr1 rmsk gene 48129284 48130752 . - . gene_id "ERVLE_1p33a"; transcript_id "ERVLE_1p33a"; locus "ERVLE_1p33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0072"; model_cov "1479"; model_pct "26.1"; chr1 rmsk exon 48129284 48129602 630 - . gene_id "ERVLE_1p33a"; transcript_id "ERVLE_1p33a"; locus "ERVLE_1p33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0072"; repClass "LTR"; repEnd "5301"; repFamily "ERVL"; repLeft "4979"; repStart "-366"; chr1 rmsk exon 48129630 48130752 2223 - . gene_id "ERVLE_1p33a"; transcript_id "ERVLE_1p33a"; locus "ERVLE_1p33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0072"; repClass "LTR"; repEnd "4919"; repFamily "ERVL"; repLeft "3762"; repStart "-748"; ### HERVFRD_1p33 ### chr1 rmsk gene 48186349 48191622 . - . gene_id "HERVFRD_1p33"; transcript_id "HERVFRD_1p33"; locus "HERVFRD_1p33"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0002"; model_cov "6169"; model_pct "85.6"; chr1 rmsk exon 48186349 48186986 3576 - . gene_id "HERVFRD_1p33"; transcript_id "HERVFRD_1p33"; locus "HERVFRD_1p33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0002"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "1"; repStart "-93"; chr1 rmsk exon 48186987 48189402 6534 - . gene_id "HERVFRD_1p33"; transcript_id "HERVFRD_1p33"; locus "HERVFRD_1p33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0002"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "2788"; repStart "-8"; chr1 rmsk exon 48189405 48191138 10261 - . gene_id "HERVFRD_1p33"; transcript_id "HERVFRD_1p33"; locus "HERVFRD_1p33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0002"; repClass "LTR"; repEnd "1761"; repFamily "ERV1"; repLeft "1"; repStart "-5444"; chr1 rmsk exon 48191140 48191622 2029 - . gene_id "HERVFRD_1p33"; transcript_id "HERVFRD_1p33"; locus "HERVFRD_1p33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0002"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "61"; repStart "-23"; ### HERVH_1p33 ### chr1 rmsk gene 48209002 48214821 . - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0021"; model_cov "4902"; model_pct "63.6"; chr1 rmsk exon 48209002 48209412 2791 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 48209413 48209787 2416 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr1 rmsk exon 48209790 48210006 1427 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 48210008 48210671 4378 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 48210674 48211176 3534 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 48211169 48211314 826 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr1 rmsk exon 48211309 48214409 16115 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 48214412 48214821 2727 - . gene_id "HERVH_1p33"; transcript_id "HERVH_1p33"; locus "HERVH_1p33"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0021"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML3_1p33 ### chr1 rmsk gene 48513245 48520256 . - . gene_id "HML3_1p33"; transcript_id "HML3_1p33"; locus "HML3_1p33"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0010"; model_cov "6020"; model_pct "100.0"; chr1 rmsk exon 48513245 48513763 4404 - . gene_id "HML3_1p33"; transcript_id "HML3_1p33"; locus "HML3_1p33"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0010"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 48513764 48519743 50171 - . gene_id "HML3_1p33"; transcript_id "HML3_1p33"; locus "HML3_1p33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0010"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 48519744 48520256 4377 - . gene_id "HML3_1p33"; transcript_id "HML3_1p33"; locus "HML3_1p33"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0010"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_1p33b ### chr1 rmsk gene 48974627 48978216 . + . gene_id "ERVLE_1p33b"; transcript_id "ERVLE_1p33b"; locus "ERVLE_1p33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0074"; model_cov "2970"; model_pct "52.4"; chr1 rmsk exon 48974627 48976314 4276 + . gene_id "ERVLE_1p33b"; transcript_id "ERVLE_1p33b"; locus "ERVLE_1p33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0074"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1594"; repStart "2277"; chr1 rmsk exon 48976335 48976648 1113 + . gene_id "ERVLE_1p33b"; transcript_id "ERVLE_1p33b"; locus "ERVLE_1p33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0074"; repClass "LTR"; repEnd "4465"; repFamily "ERVL"; repLeft "-1202"; repStart "4144"; chr1 rmsk exon 48977295 48977922 1815 + . gene_id "ERVLE_1p33b"; transcript_id "ERVLE_1p33b"; locus "ERVLE_1p33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0074"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "-535"; repStart "4473"; chr1 rmsk exon 48978020 48978216 334 + . gene_id "ERVLE_1p33b"; transcript_id "ERVLE_1p33b"; locus "ERVLE_1p33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0074"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5473"; ### MER41_1p33 ### chr1 rmsk gene 49340672 49347240 . + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0009"; model_cov "6710"; model_pct "100.0"; chr1 rmsk exon 49340672 49341245 2408 + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0009"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 49341253 49342179 3564 + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0009"; repClass "LTR"; repEnd "650"; repFamily "ERV1"; repLeft "-5296"; repStart "7"; chr1 rmsk exon 49342179 49344239 12116 + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0009"; repClass "LTR"; repEnd "3032"; repFamily "ERV1"; repLeft "-2914"; repStart "-389"; chr1 rmsk exon 49344325 49346810 12116 + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0009"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "3300"; chr1 rmsk exon 49346811 49347240 2089 + . gene_id "MER41_1p33"; transcript_id "MER41_1p33"; locus "MER41_1p33"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0009"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-123"; repStart "1"; ### HERVL_1p33a ### chr1 rmsk gene 49439505 49442076 . + . gene_id "HERVL_1p33a"; transcript_id "HERVL_1p33a"; locus "HERVL_1p33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0011"; model_cov "1819"; model_pct "32.2"; chr1 rmsk exon 49439505 49439944 2973 + . gene_id "HERVL_1p33a"; transcript_id "HERVL_1p33a"; locus "HERVL_1p33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0011"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 49439945 49440069 11659 + . gene_id "HERVL_1p33a"; transcript_id "HERVL_1p33a"; locus "HERVL_1p33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0011"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-5530"; repStart "1"; chr1 rmsk exon 49440368 49441751 11659 + . gene_id "HERVL_1p33a"; transcript_id "HERVL_1p33a"; locus "HERVL_1p33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0011"; repClass "LTR"; repEnd "1493"; repFamily "ERVL"; repLeft "-4161"; repStart "125"; chr1 rmsk exon 49441748 49442076 2657 + . gene_id "HERVL_1p33a"; transcript_id "HERVL_1p33a"; locus "HERVL_1p33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0011"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "-1336"; repStart "3990"; ### HERVL_1p33b ### chr1 rmsk gene 49572733 49579287 . + . gene_id "HERVL_1p33b"; transcript_id "HERVL_1p33b"; locus "HERVL_1p33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0012"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 49572733 49573124 2857 + . gene_id "HERVL_1p33b"; transcript_id "HERVL_1p33b"; locus "HERVL_1p33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0012"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr1 rmsk exon 49573190 49573231 2857 + . gene_id "HERVL_1p33b"; transcript_id "HERVL_1p33b"; locus "HERVL_1p33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0012"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "402"; chr1 rmsk exon 49573232 49578830 41568 + . gene_id "HERVL_1p33b"; transcript_id "HERVL_1p33b"; locus "HERVL_1p33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0012"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 49578831 49579287 2674 + . gene_id "HERVL_1p33b"; transcript_id "HERVL_1p33b"; locus "HERVL_1p33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0012"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_1p33 ### chr1 rmsk gene 49626047 49632050 . - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0027"; model_cov "4410"; model_pct "84.4"; chr1 rmsk exon 49626047 49626126 375 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "4561"; repFamily "ERVL"; repLeft "4481"; repStart "-665"; chr1 rmsk exon 49626159 49626470 1046 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "4483"; repFamily "ERVL"; repLeft "4156"; repStart "-743"; chr1 rmsk exon 49626622 49626936 1124 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "4092"; repFamily "ERVL"; repLeft "3768"; repStart "-1134"; chr1 rmsk exon 49627415 49629069 5199 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "3454"; repFamily "ERVL"; repLeft "1732"; repStart "-1772"; chr1 rmsk exon 49629291 49630228 5199 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1258"; repStart "-3054"; chr1 rmsk exon 49630310 49630656 1105 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "1248"; repFamily "ERVL"; repLeft "885"; repStart "-3978"; chr1 rmsk exon 49630944 49631596 1849 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "759"; repFamily "ERVL"; repLeft "79"; repStart "-4467"; chr1 rmsk exon 49631669 49632050 1509 - . gene_id "ERV316A3_1p33"; transcript_id "ERV316A3_1p33"; locus "ERV316A3_1p33"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0027"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "1"; repStart "-61"; ### MER4_1p33e ### chr1 rmsk gene 49870933 49873834 . + . gene_id "MER4_1p33e"; transcript_id "MER4_1p33e"; locus "MER4_1p33e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0020"; model_cov "2494"; model_pct "37.8"; chr1 rmsk exon 49870933 49873394 11268 + . gene_id "MER4_1p33e"; transcript_id "MER4_1p33e"; locus "MER4_1p33e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0020"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "4103"; chr1 rmsk exon 49873404 49873834 3097 + . gene_id "MER4_1p33e"; transcript_id "MER4_1p33e"; locus "MER4_1p33e"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0020"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "-27"; repStart "1"; ### HERVL_1p33c ### chr1 rmsk gene 50165834 50169387 . - . gene_id "HERVL_1p33c"; transcript_id "HERVL_1p33c"; locus "HERVL_1p33c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0013"; model_cov "2733"; model_pct "48.3"; chr1 rmsk exon 50165834 50166207 2636 - . gene_id "HERVL_1p33c"; transcript_id "HERVL_1p33c"; locus "HERVL_1p33c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0013"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; chr1 rmsk exon 50166209 50168249 14249 - . gene_id "HERVL_1p33c"; transcript_id "HERVL_1p33c"; locus "HERVL_1p33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0013"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "3545"; repStart "-1"; chr1 rmsk exon 50168275 50168899 5092 - . gene_id "HERVL_1p33c"; transcript_id "HERVL_1p33c"; locus "HERVL_1p33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0013"; repClass "LTR"; repEnd "626"; repFamily "ERVL"; repLeft "1"; repStart "-5028"; chr1 rmsk exon 50168900 50169387 2946 - . gene_id "HERVL_1p33c"; transcript_id "HERVL_1p33c"; locus "HERVL_1p33c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0013"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_1p32.3a ### chr1 rmsk gene 50792486 50796194 . + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0076"; model_cov "2963"; model_pct "52.3"; chr1 rmsk exon 50792486 50792973 1104 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "1551"; repFamily "ERVL"; repLeft "-4116"; repStart "1050"; chr1 rmsk exon 50793028 50793395 665 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "1931"; repFamily "ERVL"; repLeft "-3736"; repStart "1551"; chr1 rmsk exon 50793427 50793609 561 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "2176"; repFamily "ERVL"; repLeft "-3491"; repStart "1992"; chr1 rmsk exon 50793613 50793849 1038 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "2703"; repFamily "ERVL"; repLeft "-2964"; repStart "2462"; chr1 rmsk exon 50794089 50794193 1038 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "-2854"; repStart "2704"; chr1 rmsk exon 50794256 50794623 2993 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "3912"; repFamily "ERVL"; repLeft "-1755"; repStart "3547"; chr1 rmsk exon 50794936 50795452 2993 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "4463"; repFamily "ERVL"; repLeft "-1204"; repStart "3913"; chr1 rmsk exon 50795657 50796194 797 + . gene_id "ERVLE_1p32.3a"; transcript_id "ERVLE_1p32.3a"; locus "ERVLE_1p32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0076"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "-382"; repStart "4652"; ### HERVL40_1p32.3 ### chr1 rmsk gene 50942586 50947014 . - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0006"; model_cov "3505"; model_pct "63.4"; chr1 rmsk exon 50942586 50943091 1370 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-56"; repStart "-4"; chr1 rmsk exon 50943094 50943367 1220 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "5247"; repStart "-2"; chr1 rmsk exon 50943399 50943562 290 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "5222"; repStart "-248"; chr1 rmsk exon 50943962 50944057 263 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "5051"; repFamily "ERVL"; repLeft "4960"; repStart "-479"; chr1 rmsk exon 50944262 50946073 7220 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "1995"; repStart "-870"; chr1 rmsk exon 50946194 50946583 1447 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "1"; repStart "-5121"; chr1 rmsk exon 50946585 50947014 1630 - . gene_id "HERVL40_1p32.3"; transcript_id "HERVL40_1p32.3"; locus "HERVL40_1p32.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0006"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "14"; repStart "-2"; ### ERVLE_1p32.3b ### chr1 rmsk gene 51165011 51169107 . - . gene_id "ERVLE_1p32.3b"; transcript_id "ERVLE_1p32.3b"; locus "ERVLE_1p32.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0077"; model_cov "3533"; model_pct "62.3"; chr1 rmsk exon 51165011 51165050 1073 - . gene_id "ERVLE_1p32.3b"; transcript_id "ERVLE_1p32.3b"; locus "ERVLE_1p32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0077"; repClass "LTR"; repEnd "5599"; repFamily "ERVL"; repLeft "5562"; repStart "-68"; chr1 rmsk exon 51165342 51165647 1073 - . gene_id "ERVLE_1p32.3b"; transcript_id "ERVLE_1p32.3b"; locus "ERVLE_1p32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0077"; repClass "LTR"; repEnd "5561"; repFamily "ERVL"; repLeft "5244"; repStart "-106"; chr1 rmsk exon 51165647 51166532 7753 - . gene_id "ERVLE_1p32.3b"; transcript_id "ERVLE_1p32.3b"; locus "ERVLE_1p32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0077"; repClass "LTR"; repEnd "4765"; repFamily "ERVL"; repLeft "3838"; repStart "-902"; chr1 rmsk exon 51166900 51169107 11547 - . gene_id "ERVLE_1p32.3b"; transcript_id "ERVLE_1p32.3b"; locus "ERVLE_1p32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0077"; repClass "LTR"; repEnd "3837"; repFamily "ERVL"; repLeft "1585"; repStart "-1830"; ### HERVW_1p32.3a ### chr1 rmsk gene 51226975 51230497 . + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0006"; model_cov "3256"; model_pct "37.7"; chr1 rmsk exon 51226975 51227121 1204 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "2709"; repFamily "ERV1"; repLeft "-5917"; repStart "2563"; chr1 rmsk exon 51227125 51227970 6885 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "1173"; chr1 rmsk exon 51227954 51229257 10987 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2430"; chr1 rmsk exon 51229237 51229856 5339 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5405"; chr1 rmsk exon 51229850 51229888 324 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr1 rmsk exon 51229879 51230169 2353 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr1 rmsk exon 51230170 51230497 2298 + . gene_id "HERVW_1p32.3a"; transcript_id "HERVW_1p32.3a"; locus "HERVW_1p32.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0006"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_1p32.3a ### chr1 rmsk gene 52152823 52159748 . - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0029"; model_cov "5153"; model_pct "98.6"; chr1 rmsk exon 52152823 52153215 2023 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "23"; repStart "0"; chr1 rmsk exon 52153255 52155219 15408 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "5166"; repFamily "ERVL"; repLeft "3112"; repStart "-60"; chr1 rmsk exon 52155534 52156835 15408 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "3111"; repFamily "ERVL"; repLeft "1766"; repStart "-2115"; chr1 rmsk exon 52157132 52157389 15408 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "1765"; repFamily "ERVL"; repLeft "1516"; repStart "-3461"; chr1 rmsk exon 52157706 52158790 15408 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "248"; repStart "-3711"; chr1 rmsk exon 52159091 52159338 15408 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "9"; repStart "-4979"; chr1 rmsk exon 52159341 52159748 1572 - . gene_id "ERV316A3_1p32.3a"; transcript_id "ERV316A3_1p32.3a"; locus "ERV316A3_1p32.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0029"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_1p32.3 ### chr1 rmsk gene 52832683 52834593 . - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0010"; model_cov "1440"; model_pct "24.2"; chr1 rmsk exon 52832683 52832738 335 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "2221"; repFamily "ERV1"; repLeft "2163"; repStart "-3725"; chr1 rmsk exon 52832711 52832872 893 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1877"; repStart "-3929"; chr1 rmsk exon 52832888 52833246 1895 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "1768"; repFamily "ERV1"; repLeft "1371"; repStart "-4178"; chr1 rmsk exon 52833237 52833320 1455 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "1136"; repFamily "ERV1"; repLeft "1057"; repStart "-4810"; chr1 rmsk exon 52833631 52833956 3510 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "1056"; repFamily "ERV1"; repLeft "625"; repStart "-4890"; chr1 rmsk exon 52834265 52834593 3510 - . gene_id "MER41_1p32.3"; transcript_id "MER41_1p32.3"; locus "MER41_1p32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0010"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "289"; repStart "-5322"; ### HERVH_1p32.3a ### chr1 rmsk gene 53424337 53430029 . + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0022"; model_cov "4703"; model_pct "61.0"; chr1 rmsk exon 53424337 53424766 3338 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 53424769 53427698 15840 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 53427671 53427840 869 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3126"; chr1 rmsk exon 53427831 53428332 3387 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 53428335 53428996 4376 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 53428998 53429599 2556 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 53429600 53430029 3346 + . gene_id "HERVH_1p32.3a"; transcript_id "HERVH_1p32.3a"; locus "HERVH_1p32.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0022"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_1p32.3b ### chr1 rmsk gene 53432880 53435177 . + . gene_id "HERVH_1p32.3b"; transcript_id "HERVH_1p32.3b"; locus "HERVH_1p32.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0023"; model_cov "2138"; model_pct "27.7"; chr1 rmsk exon 53432880 53432985 703 + . gene_id "HERVH_1p32.3b"; transcript_id "HERVH_1p32.3b"; locus "HERVH_1p32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0023"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "346"; chr1 rmsk exon 53432998 53434803 8266 + . gene_id "HERVH_1p32.3b"; transcript_id "HERVH_1p32.3b"; locus "HERVH_1p32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0023"; repClass "LTR"; repEnd "2150"; repFamily "ERV1"; repLeft "-5563"; repStart "12"; chr1 rmsk exon 53434809 53435177 2006 + . gene_id "HERVH_1p32.3b"; transcript_id "HERVH_1p32.3b"; locus "HERVH_1p32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0023"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "6"; ### ERVLE_1p32.3c ### chr1 rmsk gene 53477198 53481817 . - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0078"; model_cov "2297"; model_pct "40.5"; chr1 rmsk exon 53477198 53477617 850 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4780"; repStart "-444"; chr1 rmsk exon 53478090 53478153 850 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4710"; repStart "-888"; chr1 rmsk exon 53478262 53478792 1571 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "4709"; repFamily "ERVL"; repLeft "4071"; repStart "-958"; chr1 rmsk exon 53479500 53479683 1571 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "4070"; repFamily "ERVL"; repLeft "3890"; repStart "-1597"; chr1 rmsk exon 53479833 53480310 1252 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "3892"; repFamily "ERVL"; repLeft "3371"; repStart "-1775"; chr1 rmsk exon 53481389 53481817 852 - . gene_id "ERVLE_1p32.3c"; transcript_id "ERVLE_1p32.3c"; locus "ERVLE_1p32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0078"; repClass "LTR"; repEnd "3291"; repFamily "ERVL"; repLeft "2845"; repStart "-2376"; ### ERV316A3_1p32.3b ### chr1 rmsk gene 54101969 54105569 . + . gene_id "ERV316A3_1p32.3b"; transcript_id "ERV316A3_1p32.3b"; locus "ERV316A3_1p32.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0030"; model_cov "2475"; model_pct "47.4"; chr1 rmsk exon 54101969 54103225 8504 + . gene_id "ERV316A3_1p32.3b"; transcript_id "ERV316A3_1p32.3b"; locus "ERV316A3_1p32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0030"; repClass "LTR"; repEnd "3935"; repFamily "ERVL"; repLeft "-1291"; repStart "2681"; chr1 rmsk exon 54103597 54104540 8504 + . gene_id "ERV316A3_1p32.3b"; transcript_id "ERV316A3_1p32.3b"; locus "ERV316A3_1p32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0030"; repClass "LTR"; repEnd "4875"; repFamily "ERVL"; repLeft "-351"; repStart "3936"; chr1 rmsk exon 54104842 54105131 8504 + . gene_id "ERV316A3_1p32.3b"; transcript_id "ERV316A3_1p32.3b"; locus "ERV316A3_1p32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0030"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "-68"; repStart "4876"; chr1 rmsk exon 54105171 54105569 1431 + . gene_id "ERV316A3_1p32.3b"; transcript_id "ERV316A3_1p32.3b"; locus "ERV316A3_1p32.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0030"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "1"; ### HML3_1p32.3 ### chr1 rmsk gene 54630287 54636120 . + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0011"; model_cov "5321"; model_pct "88.4"; chr1 rmsk exon 54630287 54630775 3953 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "2"; chr1 rmsk exon 54630776 54633691 22677 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "2910"; repFamily "ERVK"; repLeft "-3111"; repStart "1"; chr1 rmsk exon 54633661 54634537 6874 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3047"; chr1 rmsk exon 54634571 54635006 3118 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "3993"; repFamily "ERVK"; repLeft "-2028"; repStart "3242"; chr1 rmsk exon 54635002 54635753 5687 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "5959"; repFamily "ERVK"; repLeft "-62"; repStart "5203"; chr1 rmsk exon 54635783 54636120 3604 + . gene_id "HML3_1p32.3"; transcript_id "HML3_1p32.3"; locus "HML3_1p32.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0011"; repClass "LTR"; repEnd "359"; repFamily "ERVK"; repLeft "-154"; repStart "1"; ### HERVH_1p32.3c ### chr1 rmsk gene 54897904 54903584 . - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0024"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 54897904 54898299 2545 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 54898300 54898678 2388 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 54898677 54898893 1282 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 54898895 54899557 4356 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 54899560 54900062 3336 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 54900053 54900200 897 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 54900195 54903183 20829 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 54903186 54903584 2569 - . gene_id "HERVH_1p32.3c"; transcript_id "HERVH_1p32.3c"; locus "HERVH_1p32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0024"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1p32.3d ### chr1 rmsk gene 54906872 54910857 . - . gene_id "HERVH_1p32.3d"; transcript_id "HERVH_1p32.3d"; locus "HERVH_1p32.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0025"; model_cov "3236"; model_pct "42.0"; chr1 rmsk exon 54906872 54907325 3245 - . gene_id "HERVH_1p32.3d"; transcript_id "HERVH_1p32.3d"; locus "HERVH_1p32.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0025"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 54907642 54910702 23170 - . gene_id "HERVH_1p32.3d"; transcript_id "HERVH_1p32.3d"; locus "HERVH_1p32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0025"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "4641"; repStart "-2"; chr1 rmsk exon 54910694 54910857 1085 - . gene_id "HERVH_1p32.3d"; transcript_id "HERVH_1p32.3d"; locus "HERVH_1p32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0025"; repClass "LTR"; repEnd "3321"; repFamily "ERV1"; repLeft "3155"; repStart "-4392"; ### HERVW_1p32.3b ### chr1 rmsk gene 54911009 54919525 . - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0007"; model_cov "6788"; model_pct "78.7"; chr1 rmsk exon 54911009 54911766 6185 - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0007"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 54911767 54912270 14288 - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0007"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8126"; repStart "0"; chr1 rmsk exon 54912605 54913827 14288 - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0007"; repClass "LTR"; repEnd "8125"; repFamily "ERV1"; repLeft "6903"; repStart "-501"; chr1 rmsk exon 54913819 54918793 35857 - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0007"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "1"; repStart "-3559"; chr1 rmsk exon 54918794 54919525 5732 - . gene_id "HERVW_1p32.3b"; transcript_id "HERVW_1p32.3b"; locus "HERVW_1p32.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0007"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMAX_1p32.3 ### chr1 rmsk gene 54932383 54935270 . - . gene_id "PRIMAX_1p32.3"; transcript_id "PRIMAX_1p32.3"; locus "PRIMAX_1p32.3"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0001"; model_cov "1858"; model_pct "45.3"; chr1 rmsk exon 54932383 54933506 11949 - . gene_id "PRIMAX_1p32.3"; transcript_id "PRIMAX_1p32.3"; locus "PRIMAX_1p32.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0001"; repClass "LTR"; repEnd "3512"; repFamily "ERV1"; repLeft "2396"; repStart "-590"; chr1 rmsk exon 54933805 54934106 11949 - . gene_id "PRIMAX_1p32.3"; transcript_id "PRIMAX_1p32.3"; locus "PRIMAX_1p32.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0001"; repClass "LTR"; repEnd "2395"; repFamily "ERV1"; repLeft "2098"; repStart "-1707"; chr1 rmsk exon 54934474 54934596 11949 - . gene_id "PRIMAX_1p32.3"; transcript_id "PRIMAX_1p32.3"; locus "PRIMAX_1p32.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0001"; repClass "LTR"; repEnd "2097"; repFamily "ERV1"; repLeft "1975"; repStart "-2005"; chr1 rmsk exon 54934932 54935270 11949 - . gene_id "PRIMAX_1p32.3"; transcript_id "PRIMAX_1p32.3"; locus "PRIMAX_1p32.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0001"; repClass "LTR"; repEnd "1974"; repFamily "ERV1"; repLeft "1651"; repStart "-2128"; ### HERVH_1p32.3e ### chr1 rmsk gene 55022708 55028369 . + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0026"; model_cov "4842"; model_pct "62.8"; chr1 rmsk exon 55022708 55023157 3601 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr1 rmsk exon 55023171 55026144 15819 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr1 rmsk exon 55026135 55026637 3298 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 55026640 55027296 4041 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 55027298 55027886 2621 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 55027887 55028369 3390 + . gene_id "HERVH_1p32.3e"; transcript_id "HERVH_1p32.3e"; locus "HERVH_1p32.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0026"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_1p32.3d ### chr1 rmsk gene 55407838 55411559 . + . gene_id "ERVLE_1p32.3d"; transcript_id "ERVLE_1p32.3d"; locus "ERVLE_1p32.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0080"; model_cov "2185"; model_pct "38.6"; chr1 rmsk exon 55407838 55408901 2742 + . gene_id "ERVLE_1p32.3d"; transcript_id "ERVLE_1p32.3d"; locus "ERVLE_1p32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0080"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "-2855"; repStart "1714"; chr1 rmsk exon 55409120 55409210 2742 + . gene_id "ERVLE_1p32.3d"; transcript_id "ERVLE_1p32.3d"; locus "ERVLE_1p32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0080"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "-2761"; repStart "2813"; chr1 rmsk exon 55409577 55409798 2742 + . gene_id "ERVLE_1p32.3d"; transcript_id "ERVLE_1p32.3d"; locus "ERVLE_1p32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0080"; repClass "LTR"; repEnd "3130"; repFamily "ERVL"; repLeft "-2537"; repStart "2907"; chr1 rmsk exon 55410925 55411559 452 + . gene_id "ERVLE_1p32.3d"; transcript_id "ERVLE_1p32.3d"; locus "ERVLE_1p32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0080"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "-373"; repStart "4523"; ### ERVLE_1p32.3e ### chr1 rmsk gene 55437108 55437672 . + . gene_id "ERVLE_1p32.3e"; transcript_id "ERVLE_1p32.3e"; locus "ERVLE_1p32.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0081"; model_cov "565"; model_pct "10.0"; chr1 rmsk exon 55437108 55437672 1429 + . gene_id "ERVLE_1p32.3e"; transcript_id "ERVLE_1p32.3e"; locus "ERVLE_1p32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0081"; repClass "LTR"; repEnd "5136"; repFamily "ERVL"; repLeft "-531"; repStart "4571"; ### ERVLE_1p32.3f ### chr1 rmsk gene 55471412 55472626 . - . gene_id "ERVLE_1p32.3f"; transcript_id "ERVLE_1p32.3f"; locus "ERVLE_1p32.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0082"; model_cov "1279"; model_pct "22.6"; chr1 rmsk exon 55471412 55471657 801 - . gene_id "ERVLE_1p32.3f"; transcript_id "ERVLE_1p32.3f"; locus "ERVLE_1p32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0082"; repClass "LTR"; repEnd "5270"; repFamily "ERVL"; repLeft "5026"; repStart "-397"; chr1 rmsk exon 55471630 55472626 3071 - . gene_id "ERVLE_1p32.3f"; transcript_id "ERVLE_1p32.3f"; locus "ERVLE_1p32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0082"; repClass "LTR"; repEnd "4906"; repFamily "ERVL"; repLeft "3871"; repStart "-761"; ### ERVLE_1p32.3g ### chr1 rmsk gene 55497908 55499942 . - . gene_id "ERVLE_1p32.3g"; transcript_id "ERVLE_1p32.3g"; locus "ERVLE_1p32.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0083"; model_cov "1989"; model_pct "35.1"; chr1 rmsk exon 55497908 55498660 1297 - . gene_id "ERVLE_1p32.3g"; transcript_id "ERVLE_1p32.3g"; locus "ERVLE_1p32.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0083"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "4450"; repStart "-425"; chr1 rmsk exon 55498783 55499942 2185 - . gene_id "ERVLE_1p32.3g"; transcript_id "ERVLE_1p32.3g"; locus "ERVLE_1p32.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0083"; repClass "LTR"; repEnd "3564"; repFamily "ERVL"; repLeft "2367"; repStart "-2103"; ### HERVL_1p32.2a ### chr1 rmsk gene 55729046 55734929 . + . gene_id "HERVL_1p32.2a"; transcript_id "HERVL_1p32.2a"; locus "HERVL_1p32.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0014"; model_cov "4996"; model_pct "88.4"; chr1 rmsk exon 55729046 55729702 4810 + . gene_id "HERVL_1p32.2a"; transcript_id "HERVL_1p32.2a"; locus "HERVL_1p32.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0014"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "-4353"; repStart "645"; chr1 rmsk exon 55730142 55734486 31171 + . gene_id "HERVL_1p32.2a"; transcript_id "HERVL_1p32.2a"; locus "HERVL_1p32.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0014"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "1312"; chr1 rmsk exon 55734489 55734929 2853 + . gene_id "HERVL_1p32.2a"; transcript_id "HERVL_1p32.2a"; locus "HERVL_1p32.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0014"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVL_1p32.2a ### chr1 rmsk gene 55779089 55783183 . - . gene_id "ERVL_1p32.2a"; transcript_id "ERVL_1p32.2a"; locus "ERVL_1p32.2a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0009"; model_cov "3513"; model_pct "61.0"; chr1 rmsk exon 55779089 55779298 900 - . gene_id "ERVL_1p32.2a"; transcript_id "ERVL_1p32.2a"; locus "ERVL_1p32.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0009"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "1"; repStart "-297"; chr1 rmsk exon 55779423 55779895 2158 - . gene_id "ERVL_1p32.2a"; transcript_id "ERVL_1p32.2a"; locus "ERVL_1p32.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0009"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 55779896 55783183 17765 - . gene_id "ERVL_1p32.2a"; transcript_id "ERVL_1p32.2a"; locus "ERVL_1p32.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0009"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "2244"; repStart "0"; ### HERVW_1p32.2 ### chr1 rmsk gene 55783184 55788968 . - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0008"; model_cov "3964"; model_pct "46.0"; chr1 rmsk exon 55783184 55783946 5440 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr1 rmsk exon 55783951 55784237 2327 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "8335"; repStart "-5"; chr1 rmsk exon 55784231 55785975 14792 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "4182"; repFamily "ERV1"; repLeft "2430"; repStart "-4444"; chr1 rmsk exon 55785959 55787189 9460 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "779"; repStart "-6610"; chr1 rmsk exon 55787496 55788175 4731 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "2"; repStart "-7935"; chr1 rmsk exon 55788184 55788968 5164 - . gene_id "HERVW_1p32.2"; transcript_id "HERVW_1p32.2"; locus "HERVW_1p32.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0008"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_1p32.2b ### chr1 rmsk gene 55788969 55791432 . - . gene_id "ERVL_1p32.2b"; transcript_id "ERVL_1p32.2b"; locus "ERVL_1p32.2b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0010"; model_cov "2198"; model_pct "38.2"; chr1 rmsk exon 55788969 55791088 11465 - . gene_id "ERVL_1p32.2b"; transcript_id "ERVL_1p32.2b"; locus "ERVL_1p32.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0010"; repClass "LTR"; repEnd "2242"; repFamily "ERVL"; repLeft "44"; repStart "-3515"; chr1 rmsk exon 55791089 55791432 1328 - . gene_id "ERVL_1p32.2b"; transcript_id "ERVL_1p32.2b"; locus "ERVL_1p32.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0010"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "162"; repStart "0"; ### ERV316A3_1p32.2a ### chr1 rmsk gene 55812852 55814649 . - . gene_id "ERV316A3_1p32.2a"; transcript_id "ERV316A3_1p32.2a"; locus "ERV316A3_1p32.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0032"; model_cov "1192"; model_pct "22.8"; chr1 rmsk exon 55812852 55813045 675 - . gene_id "ERV316A3_1p32.2a"; transcript_id "ERV316A3_1p32.2a"; locus "ERV316A3_1p32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0032"; repClass "LTR"; repEnd "3376"; repFamily "ERVL"; repLeft "3181"; repStart "-1850"; chr1 rmsk exon 55813668 55814276 2067 - . gene_id "ERV316A3_1p32.2a"; transcript_id "ERV316A3_1p32.2a"; locus "ERV316A3_1p32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0032"; repClass "LTR"; repEnd "3068"; repFamily "ERVL"; repLeft "2445"; repStart "-2158"; chr1 rmsk exon 55814288 55814649 949 - . gene_id "ERV316A3_1p32.2a"; transcript_id "ERV316A3_1p32.2a"; locus "ERV316A3_1p32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0032"; repClass "LTR"; repEnd "1565"; repFamily "ERVL"; repLeft "1191"; repStart "-3661"; ### ERVLE_1p32.2a ### chr1 rmsk gene 55829055 55829916 . - . gene_id "ERVLE_1p32.2a"; transcript_id "ERVLE_1p32.2a"; locus "ERVLE_1p32.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0084"; model_cov "871"; model_pct "15.4"; chr1 rmsk exon 55829055 55829916 950 - . gene_id "ERVLE_1p32.2a"; transcript_id "ERVLE_1p32.2a"; locus "ERVLE_1p32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0084"; repClass "LTR"; repEnd "5625"; repFamily "ERVL"; repLeft "4754"; repStart "-42"; ### ERV316A3_1p32.2b ### chr1 rmsk gene 55842855 55844924 . - . gene_id "ERV316A3_1p32.2b"; transcript_id "ERV316A3_1p32.2b"; locus "ERV316A3_1p32.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0033"; model_cov "2210"; model_pct "42.3"; chr1 rmsk exon 55842855 55844924 1510 - . gene_id "ERV316A3_1p32.2b"; transcript_id "ERV316A3_1p32.2b"; locus "ERV316A3_1p32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0033"; repClass "LTR"; repEnd "4712"; repFamily "ERVL"; repLeft "2502"; repStart "-514"; ### ERV316A3_1p32.2c ### chr1 rmsk gene 55888184 55889591 . - . gene_id "ERV316A3_1p32.2c"; transcript_id "ERV316A3_1p32.2c"; locus "ERV316A3_1p32.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0035"; model_cov "1297"; model_pct "24.8"; chr1 rmsk exon 55888184 55889170 2548 - . gene_id "ERV316A3_1p32.2c"; transcript_id "ERV316A3_1p32.2c"; locus "ERV316A3_1p32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0035"; repClass "LTR"; repEnd "2887"; repFamily "ERVL"; repLeft "1871"; repStart "-2339"; chr1 rmsk exon 55889211 55889330 375 - . gene_id "ERV316A3_1p32.2c"; transcript_id "ERV316A3_1p32.2c"; locus "ERV316A3_1p32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0035"; repClass "LTR"; repEnd "2147"; repFamily "ERVL"; repLeft "2019"; repStart "-3079"; chr1 rmsk exon 55889440 55889591 500 - . gene_id "ERV316A3_1p32.2c"; transcript_id "ERV316A3_1p32.2c"; locus "ERV316A3_1p32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0035"; repClass "LTR"; repEnd "1536"; repFamily "ERVL"; repLeft "1383"; repStart "-3690"; ### ERVLE_1p32.2b ### chr1 rmsk gene 56083511 56084398 . + . gene_id "ERVLE_1p32.2b"; transcript_id "ERVLE_1p32.2b"; locus "ERVLE_1p32.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0086"; model_cov "899"; model_pct "15.9"; chr1 rmsk exon 56083511 56083956 1392 + . gene_id "ERVLE_1p32.2b"; transcript_id "ERVLE_1p32.2b"; locus "ERVLE_1p32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0086"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "-1081"; repStart "4137"; chr1 rmsk exon 56083954 56084398 622 + . gene_id "ERVLE_1p32.2b"; transcript_id "ERVLE_1p32.2b"; locus "ERVLE_1p32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0086"; repClass "LTR"; repEnd "5188"; repFamily "ERVL"; repLeft "-479"; repStart "4738"; ### ERV316A3_1p32.2d ### chr1 rmsk gene 56608052 56608727 . + . gene_id "ERV316A3_1p32.2d"; transcript_id "ERV316A3_1p32.2d"; locus "ERV316A3_1p32.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0036"; model_cov "664"; model_pct "12.7"; chr1 rmsk exon 56608052 56608155 430 + . gene_id "ERV316A3_1p32.2d"; transcript_id "ERV316A3_1p32.2d"; locus "ERV316A3_1p32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0036"; repClass "LTR"; repEnd "206"; repFamily "ERVL"; repLeft "-5020"; repStart "97"; chr1 rmsk exon 56608250 56608727 1073 + . gene_id "ERV316A3_1p32.2d"; transcript_id "ERV316A3_1p32.2d"; locus "ERV316A3_1p32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0036"; repClass "LTR"; repEnd "880"; repFamily "ERVL"; repLeft "-4346"; repStart "325"; ### HERVL_1p32.2b ### chr1 rmsk gene 57557024 57563307 . + . gene_id "HERVL_1p32.2b"; transcript_id "HERVL_1p32.2b"; locus "HERVL_1p32.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0016"; model_cov "5417"; model_pct "95.8"; chr1 rmsk exon 57557024 57557523 3118 + . gene_id "HERVL_1p32.2b"; transcript_id "HERVL_1p32.2b"; locus "HERVL_1p32.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0016"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 57557525 57562090 43327 + . gene_id "HERVL_1p32.2b"; transcript_id "HERVL_1p32.2b"; locus "HERVL_1p32.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0016"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "-1135"; repStart "2"; chr1 rmsk exon 57562397 57563307 43327 + . gene_id "HERVL_1p32.2b"; transcript_id "HERVL_1p32.2b"; locus "HERVL_1p32.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0016"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "-234"; repStart "4520"; ### HERV9_1p32.2 ### chr1 rmsk gene 58167160 58175478 . + . gene_id "HERV9_1p32.2"; transcript_id "HERV9_1p32.2"; locus "HERV9_1p32.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0006"; model_cov "6535"; model_pct "77.5"; chr1 rmsk exon 58167160 58167996 6468 + . gene_id "HERV9_1p32.2"; transcript_id "HERV9_1p32.2"; locus "HERV9_1p32.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0006"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 58167997 58173279 34345 + . gene_id "HERV9_1p32.2"; transcript_id "HERV9_1p32.2"; locus "HERV9_1p32.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0006"; repClass "LTR"; repEnd "5203"; repFamily "ERV1"; repLeft "-3233"; repStart "1"; chr1 rmsk exon 58173272 58174601 11161 + . gene_id "HERV9_1p32.2"; transcript_id "HERV9_1p32.2"; locus "HERV9_1p32.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0006"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7103"; chr1 rmsk exon 58174602 58175478 6587 + . gene_id "HERV9_1p32.2"; transcript_id "HERV9_1p32.2"; locus "HERV9_1p32.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0006"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p32.2c ### chr1 rmsk gene 58364583 58365289 . - . gene_id "ERVLE_1p32.2c"; transcript_id "ERVLE_1p32.2c"; locus "ERVLE_1p32.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0089"; model_cov "715"; model_pct "12.6"; chr1 rmsk exon 58364583 58365289 2133 - . gene_id "ERVLE_1p32.2c"; transcript_id "ERVLE_1p32.2c"; locus "ERVLE_1p32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0089"; repClass "LTR"; repEnd "5459"; repFamily "ERVL"; repLeft "4744"; repStart "-208"; ### ERV316A3_1p32.2e ### chr1 rmsk gene 58365304 58366814 . + . gene_id "ERV316A3_1p32.2e"; transcript_id "ERV316A3_1p32.2e"; locus "ERV316A3_1p32.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0037"; model_cov "750"; model_pct "14.4"; chr1 rmsk exon 58365304 58365705 568 + . gene_id "ERV316A3_1p32.2e"; transcript_id "ERV316A3_1p32.2e"; locus "ERV316A3_1p32.2e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0037"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "32"; chr1 rmsk exon 58366037 58366814 2443 + . gene_id "ERV316A3_1p32.2e"; transcript_id "ERV316A3_1p32.2e"; locus "ERV316A3_1p32.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0037"; repClass "LTR"; repEnd "4767"; repFamily "ERVL"; repLeft "-459"; repStart "4017"; ### ERV316A3_1p32.2f ### chr1 rmsk gene 58367294 58369323 . + . gene_id "ERV316A3_1p32.2f"; transcript_id "ERV316A3_1p32.2f"; locus "ERV316A3_1p32.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0038"; model_cov "1233"; model_pct "23.6"; chr1 rmsk exon 58367294 58368086 1681 + . gene_id "ERV316A3_1p32.2f"; transcript_id "ERV316A3_1p32.2f"; locus "ERV316A3_1p32.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0038"; repClass "LTR"; repEnd "4572"; repFamily "ERVL"; repLeft "-654"; repStart "3778"; chr1 rmsk exon 58368098 58368542 1007 + . gene_id "ERV316A3_1p32.2f"; transcript_id "ERV316A3_1p32.2f"; locus "ERV316A3_1p32.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0038"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "-102"; repStart "4685"; chr1 rmsk exon 58368671 58368828 382 + . gene_id "ERV316A3_1p32.2f"; transcript_id "ERV316A3_1p32.2f"; locus "ERV316A3_1p32.2f"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0038"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "-314"; repStart "1"; chr1 rmsk exon 58369022 58369323 1156 + . gene_id "ERV316A3_1p32.2f"; transcript_id "ERV316A3_1p32.2f"; locus "ERV316A3_1p32.2f"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0038"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "187"; ### ERV316A3_1p32.1a ### chr1 rmsk gene 58547607 58551064 . - . gene_id "ERV316A3_1p32.1a"; transcript_id "ERV316A3_1p32.1a"; locus "ERV316A3_1p32.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0039"; model_cov "2622"; model_pct "50.2"; chr1 rmsk exon 58547607 58547855 1124 - . gene_id "ERV316A3_1p32.1a"; transcript_id "ERV316A3_1p32.1a"; locus "ERV316A3_1p32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0039"; repClass "LTR"; repEnd "2749"; repFamily "ERVL"; repLeft "2501"; repStart "-2477"; chr1 rmsk exon 58547873 58549212 2306 - . gene_id "ERV316A3_1p32.1a"; transcript_id "ERV316A3_1p32.1a"; locus "ERV316A3_1p32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0039"; repClass "LTR"; repEnd "2643"; repFamily "ERVL"; repLeft "1183"; repStart "-2583"; chr1 rmsk exon 58549721 58550608 1927 - . gene_id "ERV316A3_1p32.1a"; transcript_id "ERV316A3_1p32.1a"; locus "ERV316A3_1p32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0039"; repClass "LTR"; repEnd "925"; repFamily "ERVL"; repLeft "11"; repStart "-4301"; chr1 rmsk exon 58550631 58551064 1711 - . gene_id "ERV316A3_1p32.1a"; transcript_id "ERV316A3_1p32.1a"; locus "ERV316A3_1p32.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0039"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "5"; repStart "-10"; ### ERV316A3_1p32.1b ### chr1 rmsk gene 59227368 59231293 . - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0040"; model_cov "3272"; model_pct "62.6"; chr1 rmsk exon 59227368 59227434 230 - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0040"; repClass "LTR"; repEnd "72"; repFamily "ERVL"; repLeft "1"; repStart "-366"; chr1 rmsk exon 59227485 59228678 2582 - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0040"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "3958"; repStart "-50"; chr1 rmsk exon 59228675 59230251 2918 - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0040"; repClass "LTR"; repEnd "2226"; repFamily "ERVL"; repLeft "623"; repStart "-3000"; chr1 rmsk exon 59230554 59230989 2918 - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0040"; repClass "LTR"; repEnd "622"; repFamily "ERVL"; repLeft "171"; repStart "-4604"; chr1 rmsk exon 59231100 59231293 489 - . gene_id "ERV316A3_1p32.1b"; transcript_id "ERV316A3_1p32.1b"; locus "ERV316A3_1p32.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0040"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "43"; repStart "-182"; ### ERVLE_1p32.1 ### chr1 rmsk gene 60126787 60127946 . + . gene_id "ERVLE_1p32.1"; transcript_id "ERVLE_1p32.1"; locus "ERVLE_1p32.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0090"; model_cov "1194"; model_pct "21.1"; chr1 rmsk exon 60126787 60127946 2306 + . gene_id "ERVLE_1p32.1"; transcript_id "ERVLE_1p32.1"; locus "ERVLE_1p32.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0090"; repClass "LTR"; repEnd "5245"; repFamily "ERVL"; repLeft "-422"; repStart "4051"; ### ERVLB4_1p32.1 ### chr1 rmsk gene 60177052 60179474 . - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0026"; model_cov "993"; model_pct "17.4"; chr1 rmsk exon 60177052 60177431 1494 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-41"; repStart "-53"; chr1 rmsk exon 60177432 60177685 1566 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5457"; repStart "0"; chr1 rmsk exon 60177962 60178442 2469 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "5446"; repFamily "ERVL"; repLeft "4919"; repStart "-268"; chr1 rmsk exon 60178629 60178830 1274 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "4723"; repStart "-782"; chr1 rmsk exon 60178841 60178925 1513 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "249"; repStart "-178"; chr1 rmsk exon 60179227 60179474 1513 - . gene_id "ERVLB4_1p32.1"; transcript_id "ERVLB4_1p32.1"; locus "ERVLB4_1p32.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0026"; repClass "LTR"; repEnd "248"; repFamily "ERVL"; repLeft "3"; repStart "-272"; ### HERVL_1p32.1 ### chr1 rmsk gene 60246749 60249620 . + . gene_id "HERVL_1p32.1"; transcript_id "HERVL_1p32.1"; locus "HERVL_1p32.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0018"; model_cov "2356"; model_pct "41.7"; chr1 rmsk exon 60246749 60249082 18699 + . gene_id "HERVL_1p32.1"; transcript_id "HERVL_1p32.1"; locus "HERVL_1p32.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0018"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3298"; chr1 rmsk exon 60249083 60249468 3042 + . gene_id "HERVL_1p32.1"; transcript_id "HERVL_1p32.1"; locus "HERVL_1p32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0018"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-33"; repStart "1"; chr1 rmsk exon 60249590 60249620 3042 + . gene_id "HERVL_1p32.1"; transcript_id "HERVL_1p32.1"; locus "HERVL_1p32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0018"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "412"; ### ERV316A3_1p32.1c ### chr1 rmsk gene 60534356 60536130 . + . gene_id "ERV316A3_1p32.1c"; transcript_id "ERV316A3_1p32.1c"; locus "ERV316A3_1p32.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0042"; model_cov "592"; model_pct "11.3"; chr1 rmsk exon 60534356 60534727 1550 + . gene_id "ERV316A3_1p32.1c"; transcript_id "ERV316A3_1p32.1c"; locus "ERV316A3_1p32.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0042"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-77"; repStart "18"; chr1 rmsk exon 60535112 60535165 298 + . gene_id "ERV316A3_1p32.1c"; transcript_id "ERV316A3_1p32.1c"; locus "ERV316A3_1p32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0042"; repClass "LTR"; repEnd "1276"; repFamily "ERVL"; repLeft "-3950"; repStart "1221"; chr1 rmsk exon 60535588 60536130 1562 + . gene_id "ERV316A3_1p32.1c"; transcript_id "ERV316A3_1p32.1c"; locus "ERV316A3_1p32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0042"; repClass "LTR"; repEnd "4026"; repFamily "ERVL"; repLeft "-1200"; repStart "3489"; ### ERVLE_1p31.3a ### chr1 rmsk gene 60838875 60839451 . + . gene_id "ERVLE_1p31.3a"; transcript_id "ERVLE_1p31.3a"; locus "ERVLE_1p31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0091"; model_cov "592"; model_pct "10.4"; chr1 rmsk exon 60838875 60839451 2238 + . gene_id "ERVLE_1p31.3a"; transcript_id "ERVLE_1p31.3a"; locus "ERVLE_1p31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0091"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "-5015"; repStart "60"; ### ERVLE_1p31.3b ### chr1 rmsk gene 61491454 61493071 . - . gene_id "ERVLE_1p31.3b"; transcript_id "ERVLE_1p31.3b"; locus "ERVLE_1p31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0092"; model_cov "1107"; model_pct "19.5"; chr1 rmsk exon 61491454 61491992 1784 - . gene_id "ERVLE_1p31.3b"; transcript_id "ERVLE_1p31.3b"; locus "ERVLE_1p31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0092"; repClass "LTR"; repEnd "1416"; repFamily "ERVL"; repLeft "846"; repStart "-4251"; chr1 rmsk exon 61492222 61492259 426 - . gene_id "ERVLE_1p31.3b"; transcript_id "ERVLE_1p31.3b"; locus "ERVLE_1p31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0092"; repClass "LTR"; repEnd "582"; repFamily "ERVL"; repLeft "550"; repStart "-5085"; chr1 rmsk exon 61492570 61493071 426 - . gene_id "ERVLE_1p31.3b"; transcript_id "ERVLE_1p31.3b"; locus "ERVLE_1p31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0092"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "44"; repStart "-5118"; ### HERVL_1p31.3a ### chr1 rmsk gene 61532357 61533664 . - . gene_id "HERVL_1p31.3a"; transcript_id "HERVL_1p31.3a"; locus "HERVL_1p31.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0020"; model_cov "937"; model_pct "16.6"; chr1 rmsk exon 61532357 61532981 1080 - . gene_id "HERVL_1p31.3a"; transcript_id "HERVL_1p31.3a"; locus "HERVL_1p31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0020"; repClass "LTR"; repEnd "2908"; repFamily "ERVL"; repLeft "2266"; repStart "-2746"; chr1 rmsk exon 61533356 61533664 1080 - . gene_id "HERVL_1p31.3a"; transcript_id "HERVL_1p31.3a"; locus "HERVL_1p31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0020"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "1685"; repStart "-3674"; ### ERVLE_1p31.3c ### chr1 rmsk gene 61624862 61627276 . + . gene_id "ERVLE_1p31.3c"; transcript_id "ERVLE_1p31.3c"; locus "ERVLE_1p31.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0093"; model_cov "1234"; model_pct "21.8"; chr1 rmsk exon 61624862 61625411 1205 + . gene_id "ERVLE_1p31.3c"; transcript_id "ERVLE_1p31.3c"; locus "ERVLE_1p31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0093"; repClass "LTR"; repEnd "835"; repFamily "ERVL"; repLeft "-4832"; repStart "275"; chr1 rmsk exon 61626597 61626674 267 + . gene_id "ERVLE_1p31.3c"; transcript_id "ERVLE_1p31.3c"; locus "ERVLE_1p31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0093"; repClass "LTR"; repEnd "1579"; repFamily "ERVL"; repLeft "-4088"; repStart "1493"; chr1 rmsk exon 61626690 61627187 1426 + . gene_id "ERVLE_1p31.3c"; transcript_id "ERVLE_1p31.3c"; locus "ERVLE_1p31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0093"; repClass "LTR"; repEnd "2133"; repFamily "ERVL"; repLeft "-3534"; repStart "1611"; chr1 rmsk exon 61627213 61627276 284 + . gene_id "ERVLE_1p31.3c"; transcript_id "ERVLE_1p31.3c"; locus "ERVLE_1p31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0093"; repClass "LTR"; repEnd "2341"; repFamily "ERVL"; repLeft "-3326"; repStart "2275"; ### ERVLE_1p31.3d ### chr1 rmsk gene 61632364 61634362 . + . gene_id "ERVLE_1p31.3d"; transcript_id "ERVLE_1p31.3d"; locus "ERVLE_1p31.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0095"; model_cov "1978"; model_pct "34.9"; chr1 rmsk exon 61632364 61632456 1590 + . gene_id "ERVLE_1p31.3d"; transcript_id "ERVLE_1p31.3d"; locus "ERVLE_1p31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0095"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "-3335"; repStart "2251"; chr1 rmsk exon 61632619 61634362 1757 + . gene_id "ERVLE_1p31.3d"; transcript_id "ERVLE_1p31.3d"; locus "ERVLE_1p31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0095"; repClass "LTR"; repEnd "4230"; repFamily "ERVL"; repLeft "-1437"; repStart "2333"; ### HML1_1p31.3 ### chr1 rmsk gene 62178464 62183789 . - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0001"; model_cov "4631"; model_pct "76.0"; chr1 rmsk exon 62178464 62178796 2618 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 62178800 62178915 759 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr1 rmsk exon 62178991 62179171 1451 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5712"; repStart "-199"; chr1 rmsk exon 62179205 62180590 11471 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4140"; repStart "-544"; chr1 rmsk exon 62180580 62183445 23089 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "2912"; repFamily "ERVK"; repLeft "1"; repStart "-3184"; chr1 rmsk exon 62183446 62183789 2721 - . gene_id "HML1_1p31.3"; transcript_id "HML1_1p31.3"; locus "HML1_1p31.3"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0001"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_1p31.3a ### chr1 rmsk gene 62427667 62431892 . - . gene_id "ERV316A3_1p31.3a"; transcript_id "ERV316A3_1p31.3a"; locus "ERV316A3_1p31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0044"; model_cov "2501"; model_pct "47.9"; chr1 rmsk exon 62427667 62427826 682 - . gene_id "ERV316A3_1p31.3a"; transcript_id "ERV316A3_1p31.3a"; locus "ERV316A3_1p31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0044"; repClass "LTR"; repEnd "2594"; repFamily "ERVL"; repLeft "2438"; repStart "-2632"; chr1 rmsk exon 62428390 62428729 1423 - . gene_id "ERV316A3_1p31.3a"; transcript_id "ERV316A3_1p31.3a"; locus "ERV316A3_1p31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0044"; repClass "LTR"; repEnd "2454"; repFamily "ERVL"; repLeft "2113"; repStart "-2772"; chr1 rmsk exon 62429468 62431438 5111 - . gene_id "ERV316A3_1p31.3a"; transcript_id "ERV316A3_1p31.3a"; locus "ERV316A3_1p31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0044"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "87"; repStart "-3135"; chr1 rmsk exon 62431560 62431892 814 - . gene_id "ERV316A3_1p31.3a"; transcript_id "ERV316A3_1p31.3a"; locus "ERV316A3_1p31.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0044"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "1"; repStart "-90"; ### HERVH_1p31.3a ### chr1 rmsk gene 63572744 63574886 . - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0027"; model_cov "1819"; model_pct "23.6"; chr1 rmsk exon 63572744 63573100 1857 - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0027"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-46"; chr1 rmsk exon 63573101 63573480 2404 - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0027"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 63573481 63573697 1312 - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0027"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 63573699 63573888 1020 - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0027"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4959"; repStart "-2564"; chr1 rmsk exon 63573892 63574886 4509 - . gene_id "HERVH_1p31.3a"; transcript_id "HERVH_1p31.3a"; locus "HERVH_1p31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0027"; repClass "LTR"; repEnd "6187"; repFamily "ERV1"; repLeft "5166"; repStart "-1526"; ### ERV316A3_1p31.3b ### chr1 rmsk gene 63705544 63707137 . + . gene_id "ERV316A3_1p31.3b"; transcript_id "ERV316A3_1p31.3b"; locus "ERV316A3_1p31.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0045"; model_cov "1444"; model_pct "27.6"; chr1 rmsk exon 63705544 63705825 1021 + . gene_id "ERV316A3_1p31.3b"; transcript_id "ERV316A3_1p31.3b"; locus "ERV316A3_1p31.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0045"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "149"; chr1 rmsk exon 63705826 63707137 1662 + . gene_id "ERV316A3_1p31.3b"; transcript_id "ERV316A3_1p31.3b"; locus "ERV316A3_1p31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0045"; repClass "LTR"; repEnd "1445"; repFamily "ERVL"; repLeft "-3781"; repStart "1"; ### ERV316A3_1p31.3c ### chr1 rmsk gene 63707156 63708437 . + . gene_id "ERV316A3_1p31.3c"; transcript_id "ERV316A3_1p31.3c"; locus "ERV316A3_1p31.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0046"; model_cov "854"; model_pct "16.3"; chr1 rmsk exon 63707156 63707248 332 + . gene_id "ERV316A3_1p31.3c"; transcript_id "ERV316A3_1p31.3c"; locus "ERV316A3_1p31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0046"; repClass "LTR"; repEnd "1444"; repFamily "ERVL"; repLeft "-3782"; repStart "1350"; chr1 rmsk exon 63707285 63707991 1706 + . gene_id "ERV316A3_1p31.3c"; transcript_id "ERV316A3_1p31.3c"; locus "ERV316A3_1p31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0046"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4466"; chr1 rmsk exon 63707997 63708437 1316 + . gene_id "ERV316A3_1p31.3c"; transcript_id "ERV316A3_1p31.3c"; locus "ERV316A3_1p31.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0046"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-13"; repStart "6"; ### ERV316A3_1p31.3d ### chr1 rmsk gene 63764735 63765414 . - . gene_id "ERV316A3_1p31.3d"; transcript_id "ERV316A3_1p31.3d"; locus "ERV316A3_1p31.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0047"; model_cov "592"; model_pct "11.3"; chr1 rmsk exon 63764735 63764965 428 - . gene_id "ERV316A3_1p31.3d"; transcript_id "ERV316A3_1p31.3d"; locus "ERV316A3_1p31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0047"; repClass "LTR"; repEnd "2875"; repFamily "ERVL"; repLeft "2477"; repStart "-2351"; chr1 rmsk exon 63765164 63765210 252 - . gene_id "ERV316A3_1p31.3d"; transcript_id "ERV316A3_1p31.3d"; locus "ERV316A3_1p31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0047"; repClass "LTR"; repEnd "1539"; repFamily "ERVL"; repLeft "1492"; repStart "-3687"; chr1 rmsk exon 63765267 63765414 633 - . gene_id "ERV316A3_1p31.3d"; transcript_id "ERV316A3_1p31.3d"; locus "ERV316A3_1p31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0047"; repClass "LTR"; repEnd "1403"; repFamily "ERVL"; repLeft "1256"; repStart "-3823"; ### HERVL18_1p31.3a ### chr1 rmsk gene 64186607 64192762 . + . gene_id "HERVL18_1p31.3a"; transcript_id "HERVL18_1p31.3a"; locus "HERVL18_1p31.3a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0001"; model_cov "5487"; model_pct "90.7"; chr1 rmsk exon 64186607 64186943 2417 + . gene_id "HERVL18_1p31.3a"; transcript_id "HERVL18_1p31.3a"; locus "HERVL18_1p31.3a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0001"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 64186958 64192253 33501 + . gene_id "HERVL18_1p31.3a"; transcript_id "HERVL18_1p31.3a"; locus "HERVL18_1p31.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0001"; repClass "LTR"; repEnd "5307"; repFamily "ERVL"; repLeft "-740"; repStart "9"; chr1 rmsk exon 64192233 64192422 1060 + . gene_id "HERVL18_1p31.3a"; transcript_id "HERVL18_1p31.3a"; locus "HERVL18_1p31.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0001"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5858"; chr1 rmsk exon 64192424 64192762 2505 + . gene_id "HERVL18_1p31.3a"; transcript_id "HERVL18_1p31.3a"; locus "HERVL18_1p31.3a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0001"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_1p31.3b ### chr1 rmsk gene 64349943 64355761 . - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0028"; model_cov "4904"; model_pct "63.6"; chr1 rmsk exon 64349943 64350394 3425 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 64350395 64350774 2715 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 64350773 64350990 1421 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 64350992 64351653 4494 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 64351656 64352150 3455 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr1 rmsk exon 64352154 64352299 900 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "3140"; repStart "-4427"; chr1 rmsk exon 64352279 64355315 20910 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 64355318 64355761 3404 - . gene_id "HERVH_1p31.3b"; transcript_id "HERVH_1p31.3b"; locus "HERVH_1p31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0028"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_1p31.3e ### chr1 rmsk gene 64729146 64734751 . - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0048"; model_cov "3323"; model_pct "63.6"; chr1 rmsk exon 64729146 64729600 1839 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr1 rmsk exon 64729609 64730378 4881 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "4449"; repStart "-7"; chr1 rmsk exon 64730825 64731541 4881 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "3692"; repStart "-778"; chr1 rmsk exon 64731539 64732355 2811 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "2956"; repFamily "ERVL"; repLeft "2157"; repStart "-2270"; chr1 rmsk exon 64732882 64733266 2811 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "1767"; repStart "-3070"; chr1 rmsk exon 64733366 64733985 1659 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "962"; repStart "-3655"; chr1 rmsk exon 64734301 64734751 1658 - . gene_id "ERV316A3_1p31.3e"; transcript_id "ERV316A3_1p31.3e"; locus "ERV316A3_1p31.3e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0048"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "31"; repStart "0"; ### ERV316A3_1p31.3f ### chr1 rmsk gene 64974575 64976920 . - . gene_id "ERV316A3_1p31.3f"; transcript_id "ERV316A3_1p31.3f"; locus "ERV316A3_1p31.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0049"; model_cov "1457"; model_pct "27.9"; chr1 rmsk exon 64974575 64974906 1130 - . gene_id "ERV316A3_1p31.3f"; transcript_id "ERV316A3_1p31.3f"; locus "ERV316A3_1p31.3f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0049"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "194"; repStart "-4"; chr1 rmsk exon 64975257 64975424 1130 - . gene_id "ERV316A3_1p31.3f"; transcript_id "ERV316A3_1p31.3f"; locus "ERV316A3_1p31.3f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0049"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "1"; repStart "-287"; chr1 rmsk exon 64975426 64976324 2755 - . gene_id "ERV316A3_1p31.3f"; transcript_id "ERV316A3_1p31.3f"; locus "ERV316A3_1p31.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0049"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4313"; repStart "-1"; chr1 rmsk exon 64976366 64976920 2028 - . gene_id "ERV316A3_1p31.3f"; transcript_id "ERV316A3_1p31.3f"; locus "ERV316A3_1p31.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0049"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "985"; repStart "-3696"; ### HERVH_1p31.3c ### chr1 rmsk gene 65643207 65648034 . - . gene_id "HERVH_1p31.3c"; transcript_id "HERVH_1p31.3c"; locus "HERVH_1p31.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0029"; model_cov "6209"; model_pct "80.5"; chr1 rmsk exon 65643207 65643638 2668 - . gene_id "HERVH_1p31.3c"; transcript_id "HERVH_1p31.3c"; locus "HERVH_1p31.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0029"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 65643639 65644018 2514 - . gene_id "HERVH_1p31.3c"; transcript_id "HERVH_1p31.3c"; locus "HERVH_1p31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0029"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 65644017 65647600 17043 - . gene_id "HERVH_1p31.3c"; transcript_id "HERVH_1p31.3c"; locus "HERVH_1p31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0029"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "1"; repStart "-1894"; chr1 rmsk exon 65647603 65648034 2637 - . gene_id "HERVH_1p31.3c"; transcript_id "HERVH_1p31.3c"; locus "HERVH_1p31.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0029"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_1p31.3e ### chr1 rmsk gene 65693577 65694841 . + . gene_id "ERVLE_1p31.3e"; transcript_id "ERVLE_1p31.3e"; locus "ERVLE_1p31.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0097"; model_cov "754"; model_pct "13.3"; chr1 rmsk exon 65693577 65693750 258 + . gene_id "ERVLE_1p31.3e"; transcript_id "ERVLE_1p31.3e"; locus "ERVLE_1p31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0097"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "-1523"; repStart "3967"; chr1 rmsk exon 65694267 65694841 676 + . gene_id "ERVLE_1p31.3e"; transcript_id "ERVLE_1p31.3e"; locus "ERVLE_1p31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0097"; repClass "LTR"; repEnd "5016"; repFamily "ERVL"; repLeft "-651"; repStart "4439"; ### HERVL_1p31.3b ### chr1 rmsk gene 65927540 65930375 . - . gene_id "HERVL_1p31.3b"; transcript_id "HERVL_1p31.3b"; locus "HERVL_1p31.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0022"; model_cov "2475"; model_pct "43.8"; chr1 rmsk exon 65927540 65929983 19274 - . gene_id "HERVL_1p31.3b"; transcript_id "HERVL_1p31.3b"; locus "HERVL_1p31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0022"; repClass "LTR"; repEnd "2476"; repFamily "ERVL"; repLeft "1"; repStart "-3178"; chr1 rmsk exon 65929984 65930375 2527 - . gene_id "HERVL_1p31.3b"; transcript_id "HERVL_1p31.3b"; locus "HERVL_1p31.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0022"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1p31.3g ### chr1 rmsk gene 65945013 65946329 . - . gene_id "ERV316A3_1p31.3g"; transcript_id "ERV316A3_1p31.3g"; locus "ERV316A3_1p31.3g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0053"; model_cov "1541"; model_pct "29.5"; chr1 rmsk exon 65945013 65946329 2755 - . gene_id "ERV316A3_1p31.3g"; transcript_id "ERV316A3_1p31.3g"; locus "ERV316A3_1p31.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0053"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "2864"; repStart "-821"; ### ERV316A3_1p31.3h ### chr1 rmsk gene 65946472 65950867 . - . gene_id "ERV316A3_1p31.3h"; transcript_id "ERV316A3_1p31.3h"; locus "ERV316A3_1p31.3h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0054"; model_cov "3286"; model_pct "62.9"; chr1 rmsk exon 65946472 65947469 2755 - . gene_id "ERV316A3_1p31.3h"; transcript_id "ERV316A3_1p31.3h"; locus "ERV316A3_1p31.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0054"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "3236"; repStart "-821"; chr1 rmsk exon 65947921 65948281 2755 - . gene_id "ERV316A3_1p31.3h"; transcript_id "ERV316A3_1p31.3h"; locus "ERV316A3_1p31.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0054"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "1857"; repStart "-3105"; chr1 rmsk exon 65948706 65950433 2755 - . gene_id "ERV316A3_1p31.3h"; transcript_id "ERV316A3_1p31.3h"; locus "ERV316A3_1p31.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0054"; repClass "LTR"; repEnd "1856"; repFamily "ERVL"; repLeft "3"; repStart "-3370"; chr1 rmsk exon 65950464 65950867 1240 - . gene_id "ERV316A3_1p31.3h"; transcript_id "ERV316A3_1p31.3h"; locus "ERV316A3_1p31.3h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0054"; repClass "LTR"; repEnd "417"; repFamily "ERVL"; repLeft "1"; repStart "-39"; ### HERVL18_1p31.3b ### chr1 rmsk gene 66381794 66383692 . + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; category "unknown"; intModel "HERVL18-int"; locid "HERVL18-int_0002"; model_cov "1127"; model_pct "18.6"; chr1 rmsk exon 66381794 66381916 467 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2273"; chr1 rmsk exon 66381916 66382060 844 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "2863"; repFamily "ERVL"; repLeft "-3184"; repStart "2720"; chr1 rmsk exon 66382067 66382207 949 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "245"; repFamily "ERVL"; repLeft "-112"; repStart "102"; chr1 rmsk exon 66382237 66382918 2272 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2868"; chr1 rmsk exon 66382921 66383014 631 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr1 rmsk exon 66383319 66383692 1949 + . gene_id "HERVL18_1p31.3b"; transcript_id "HERVL18_1p31.3b"; locus "HERVL18_1p31.3b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0002"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV9_1p31.3 ### chr1 rmsk gene 66416987 66426369 . - . gene_id "HERV9_1p31.3"; transcript_id "HERV9_1p31.3"; locus "HERV9_1p31.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0007"; model_cov "8426"; model_pct "99.9"; chr1 rmsk exon 66416987 66417538 4086 - . gene_id "HERV9_1p31.3"; transcript_id "HERV9_1p31.3"; locus "HERV9_1p31.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0007"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 66417539 66421746 33779 - . gene_id "HERV9_1p31.3"; transcript_id "HERV9_1p31.3"; locus "HERV9_1p31.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0007"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "4214"; repStart "0"; chr1 rmsk exon 66421743 66424814 12910 - . gene_id "HERV9_1p31.3"; transcript_id "HERV9_1p31.3"; locus "HERV9_1p31.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0007"; repClass "LTR"; repEnd "5609"; repFamily "ERV1"; repLeft "2022"; repStart "-2827"; chr1 rmsk exon 66425775 66426369 7528 - . gene_id "HERV9_1p31.3"; transcript_id "HERV9_1p31.3"; locus "HERV9_1p31.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0007"; repClass "LTR"; repEnd "3738"; repFamily "ERV1"; repLeft "3121"; repStart "-4698"; ### ERVLE_1p31.3f ### chr1 rmsk gene 66521316 66524803 . + . gene_id "ERVLE_1p31.3f"; transcript_id "ERVLE_1p31.3f"; locus "ERVLE_1p31.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0099"; model_cov "3295"; model_pct "58.1"; chr1 rmsk exon 66521316 66522352 2292 + . gene_id "ERVLE_1p31.3f"; transcript_id "ERVLE_1p31.3f"; locus "ERVLE_1p31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0099"; repClass "LTR"; repEnd "1173"; repFamily "ERVL"; repLeft "-4494"; repStart "-40"; chr1 rmsk exon 66522570 66523086 2292 + . gene_id "ERVLE_1p31.3f"; transcript_id "ERVLE_1p31.3f"; locus "ERVLE_1p31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0099"; repClass "LTR"; repEnd "1718"; repFamily "ERVL"; repLeft "-3949"; repStart "1151"; chr1 rmsk exon 66523441 66524803 3017 + . gene_id "ERVLE_1p31.3f"; transcript_id "ERVLE_1p31.3f"; locus "ERVLE_1p31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0099"; repClass "LTR"; repEnd "3248"; repFamily "ERVL"; repLeft "-2419"; repStart "1733"; ### ERVLB4_1p31.3 ### chr1 rmsk gene 66840709 66841817 . - . gene_id "ERVLB4_1p31.3"; transcript_id "ERVLB4_1p31.3"; locus "ERVLB4_1p31.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0028"; model_cov "963"; model_pct "16.9"; chr1 rmsk exon 66840709 66841531 4936 - . gene_id "ERVLB4_1p31.3"; transcript_id "ERVLB4_1p31.3"; locus "ERVLB4_1p31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0028"; repClass "LTR"; repEnd "3216"; repFamily "ERVL"; repLeft "2386"; repStart "-2498"; chr1 rmsk exon 66841671 66841817 4936 - . gene_id "ERVLB4_1p31.3"; transcript_id "ERVLB4_1p31.3"; locus "ERVLB4_1p31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0028"; repClass "LTR"; repEnd "2385"; repFamily "ERVL"; repLeft "2252"; repStart "-3329"; ### MER4_1p31.3 ### chr1 rmsk gene 66912485 66919266 . + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0024"; model_cov "5428"; model_pct "82.3"; chr1 rmsk exon 66912485 66912767 2546 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0024"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "181"; chr1 rmsk exon 66913303 66913700 3740 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-6128"; repStart "55"; chr1 rmsk exon 66914003 66914244 3740 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "471"; chr1 rmsk exon 66914271 66914476 1259 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "-5599"; repStart "790"; chr1 rmsk exon 66914496 66915200 4265 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr1 rmsk exon 66915444 66915840 2425 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "3151"; repFamily "ERV1"; repLeft "-3447"; repStart "2737"; chr1 rmsk exon 66916103 66918817 15335 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0024"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3154"; chr1 rmsk exon 66918819 66919266 3059 + . gene_id "MER4_1p31.3"; transcript_id "MER4_1p31.3"; locus "MER4_1p31.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0024"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p31.3g ### chr1 rmsk gene 67059766 67062974 . - . gene_id "ERVLE_1p31.3g"; transcript_id "ERVLE_1p31.3g"; locus "ERVLE_1p31.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0100"; model_cov "2294"; model_pct "40.5"; chr1 rmsk exon 67059766 67060524 2222 - . gene_id "ERVLE_1p31.3g"; transcript_id "ERVLE_1p31.3g"; locus "ERVLE_1p31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0100"; repClass "LTR"; repEnd "2731"; repFamily "ERVL"; repLeft "1966"; repStart "-2936"; chr1 rmsk exon 67061437 67062597 3144 - . gene_id "ERVLE_1p31.3g"; transcript_id "ERVLE_1p31.3g"; locus "ERVLE_1p31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0100"; repClass "LTR"; repEnd "1965"; repFamily "ERVL"; repLeft "780"; repStart "-3702"; chr1 rmsk exon 67062642 67062974 392 - . gene_id "ERVLE_1p31.3g"; transcript_id "ERVLE_1p31.3g"; locus "ERVLE_1p31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0100"; repClass "LTR"; repEnd "606"; repFamily "ERVL"; repLeft "262"; repStart "-5061"; ### HERVL_1p31.3c ### chr1 rmsk gene 67288388 67292750 . + . gene_id "HERVL_1p31.3c"; transcript_id "HERVL_1p31.3c"; locus "HERVL_1p31.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0023"; model_cov "3966"; model_pct "70.1"; chr1 rmsk exon 67288388 67288843 2669 + . gene_id "HERVL_1p31.3c"; transcript_id "HERVL_1p31.3c"; locus "HERVL_1p31.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0023"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 67288844 67290879 15269 + . gene_id "HERVL_1p31.3c"; transcript_id "HERVL_1p31.3c"; locus "HERVL_1p31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0023"; repClass "LTR"; repEnd "2056"; repFamily "ERVL"; repLeft "-3598"; repStart "1"; chr1 rmsk exon 67290865 67292750 14456 + . gene_id "HERVL_1p31.3c"; transcript_id "HERVL_1p31.3c"; locus "HERVL_1p31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0023"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-429"; repStart "3314"; ### MER4B_1p31.3 ### chr1 rmsk gene 67516690 67520753 . + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0008"; model_cov "2697"; model_pct "39.9"; chr1 rmsk exon 67516690 67517476 2210 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "3342"; repFamily "ERV1"; repLeft "-3416"; repStart "2313"; chr1 rmsk exon 67517461 67517924 4774 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "5018"; repFamily "ERV1"; repLeft "-1740"; repStart "4566"; chr1 rmsk exon 67518616 67519152 4774 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "5462"; repFamily "ERV1"; repLeft "-1296"; repStart "4835"; chr1 rmsk exon 67519455 67519792 3866 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "5922"; repFamily "ERV1"; repLeft "-836"; repStart "5590"; chr1 rmsk exon 67520100 67520307 3866 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "6126"; repFamily "ERV1"; repLeft "-632"; repStart "5923"; chr1 rmsk exon 67520379 67520392 686 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "6327"; repFamily "ERV1"; repLeft "-431"; repStart "6325"; chr1 rmsk exon 67520685 67520753 686 + . gene_id "MER4B_1p31.3"; transcript_id "MER4B_1p31.3"; locus "MER4B_1p31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0008"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "-378"; repStart "6328"; ### MER101_1p31.3 ### chr1 rmsk gene 68054877 68056307 . + . gene_id "MER101_1p31.3"; transcript_id "MER101_1p31.3"; locus "MER101_1p31.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0012"; model_cov "1208"; model_pct "18.2"; chr1 rmsk exon 68054877 68055200 523 + . gene_id "MER101_1p31.3"; transcript_id "MER101_1p31.3"; locus "MER101_1p31.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0012"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "-3966"; repStart "2355"; chr1 rmsk exon 68055390 68056307 3914 + . gene_id "MER101_1p31.3"; transcript_id "MER101_1p31.3"; locus "MER101_1p31.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0012"; repClass "LTR"; repEnd "3737"; repFamily "ERV1"; repLeft "-2902"; repStart "2847"; ### ERV316A3_1p31.3i ### chr1 rmsk gene 68309163 68312885 . - . gene_id "ERV316A3_1p31.3i"; transcript_id "ERV316A3_1p31.3i"; locus "ERV316A3_1p31.3i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0056"; model_cov "2371"; model_pct "45.4"; chr1 rmsk exon 68309163 68309447 556 - . gene_id "ERV316A3_1p31.3i"; transcript_id "ERV316A3_1p31.3i"; locus "ERV316A3_1p31.3i"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0056"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "134"; repStart "-148"; chr1 rmsk exon 68309784 68310027 3176 - . gene_id "ERV316A3_1p31.3i"; transcript_id "ERV316A3_1p31.3i"; locus "ERV316A3_1p31.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0056"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "4864"; repStart "-94"; chr1 rmsk exon 68310366 68312118 3176 - . gene_id "ERV316A3_1p31.3i"; transcript_id "ERV316A3_1p31.3i"; locus "ERV316A3_1p31.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0056"; repClass "LTR"; repEnd "4863"; repFamily "ERVL"; repLeft "3123"; repStart "-363"; chr1 rmsk exon 68312524 68312885 3176 - . gene_id "ERV316A3_1p31.3i"; transcript_id "ERV316A3_1p31.3i"; locus "ERV316A3_1p31.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0056"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "2759"; repStart "-2104"; ### HERVH_1p31.3d ### chr1 rmsk gene 68386004 68391992 . + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0030"; model_cov "4919"; model_pct "63.8"; chr1 rmsk exon 68386004 68386437 2625 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 68386440 68389684 16011 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 68389664 68389813 938 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 68389804 68390303 3303 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 68390306 68390968 4238 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 68390966 68391185 1355 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr1 rmsk exon 68391184 68391562 2614 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 68391563 68391992 2626 + . gene_id "HERVH_1p31.3d"; transcript_id "HERVH_1p31.3d"; locus "HERVH_1p31.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0030"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_1p31.2 ### chr1 rmsk gene 68507762 68513195 . - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0025"; model_cov "3890"; model_pct "59.0"; chr1 rmsk exon 68507762 68508053 2571 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0025"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "142"; repStart "0"; chr1 rmsk exon 68508354 68508494 2571 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0025"; repClass "LTR"; repEnd "141"; repFamily "ERV1"; repLeft "4"; repStart "-324"; chr1 rmsk exon 68508506 68508812 1460 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0025"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6298"; repStart "-2"; chr1 rmsk exon 68508856 68511151 11342 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0025"; repClass "LTR"; repEnd "6320"; repFamily "ERV1"; repLeft "4000"; repStart "-278"; chr1 rmsk exon 68511587 68512214 4909 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0025"; repClass "LTR"; repEnd "4013"; repFamily "ERV1"; repLeft "3460"; repStart "-2585"; chr1 rmsk exon 68512522 68513195 4909 - . gene_id "MER4_1p31.2"; transcript_id "MER4_1p31.2"; locus "MER4_1p31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0025"; repClass "LTR"; repEnd "3459"; repFamily "ERV1"; repLeft "2740"; repStart "-3139"; ### HERVL_1p31.2 ### chr1 rmsk gene 68809807 68810804 . - . gene_id "HERVL_1p31.2"; transcript_id "HERVL_1p31.2"; locus "HERVL_1p31.2"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0024"; model_cov "693"; model_pct "12.3"; chr1 rmsk exon 68809807 68810244 448 - . gene_id "HERVL_1p31.2"; transcript_id "HERVL_1p31.2"; locus "HERVL_1p31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0024"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "4843"; repStart "-369"; chr1 rmsk exon 68810286 68810373 378 - . gene_id "HERVL_1p31.2"; transcript_id "HERVL_1p31.2"; locus "HERVL_1p31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0024"; repClass "LTR"; repEnd "4688"; repFamily "ERVL"; repLeft "4611"; repStart "-966"; chr1 rmsk exon 68810683 68810804 260 - . gene_id "HERVL_1p31.2"; transcript_id "HERVL_1p31.2"; locus "HERVL_1p31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0024"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "4341"; repStart "-1139"; ### HUERSP2_1p31.2 ### chr1 rmsk gene 68859650 68863453 . - . gene_id "HUERSP2_1p31.2"; transcript_id "HUERSP2_1p31.2"; locus "HUERSP2_1p31.2"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0001"; model_cov "2756"; model_pct "89.2"; chr1 rmsk exon 68859650 68860429 4559 - . gene_id "HUERSP2_1p31.2"; transcript_id "HUERSP2_1p31.2"; locus "HUERSP2_1p31.2"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0001"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "1"; repStart "-12"; chr1 rmsk exon 68860430 68860538 772 - . gene_id "HUERSP2_1p31.2"; transcript_id "HUERSP2_1p31.2"; locus "HUERSP2_1p31.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0001"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2980"; repStart "0"; chr1 rmsk exon 68860538 68863088 13295 - . gene_id "HUERSP2_1p31.2"; transcript_id "HUERSP2_1p31.2"; locus "HUERSP2_1p31.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0001"; repClass "LTR"; repEnd "-1145"; repFamily "ERV1"; repLeft "-3793"; repStart "-4233"; chr1 rmsk exon 68863250 68863453 4604 - . gene_id "HUERSP2_1p31.2"; transcript_id "HUERSP2_1p31.2"; locus "HUERSP2_1p31.2"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0001"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "605"; repStart "0"; ### ERV316A3_1p31.2 ### chr1 rmsk gene 68892430 68893458 . + . gene_id "ERV316A3_1p31.2"; transcript_id "ERV316A3_1p31.2"; locus "ERV316A3_1p31.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0057"; model_cov "1035"; model_pct "19.8"; chr1 rmsk exon 68892430 68893088 1746 + . gene_id "ERV316A3_1p31.2"; transcript_id "ERV316A3_1p31.2"; locus "ERV316A3_1p31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0057"; repClass "LTR"; repEnd "2852"; repFamily "ERVL"; repLeft "-2374"; repStart "2178"; chr1 rmsk exon 68893094 68893458 676 + . gene_id "ERV316A3_1p31.2"; transcript_id "ERV316A3_1p31.2"; locus "ERV316A3_1p31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0057"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2304"; repStart "2561"; ### ERVLE_1p31.1a ### chr1 rmsk gene 69440471 69442508 . - . gene_id "ERVLE_1p31.1a"; transcript_id "ERVLE_1p31.1a"; locus "ERVLE_1p31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0102"; model_cov "1202"; model_pct "21.2"; chr1 rmsk exon 69440471 69440869 1046 - . gene_id "ERVLE_1p31.1a"; transcript_id "ERVLE_1p31.1a"; locus "ERVLE_1p31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0102"; repClass "LTR"; repEnd "4665"; repFamily "ERVL"; repLeft "4226"; repStart "-1002"; chr1 rmsk exon 69441439 69441949 1131 - . gene_id "ERVLE_1p31.1a"; transcript_id "ERVLE_1p31.1a"; locus "ERVLE_1p31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0102"; repClass "LTR"; repEnd "4011"; repFamily "ERVL"; repLeft "3525"; repStart "-1656"; chr1 rmsk exon 69442246 69442354 342 - . gene_id "ERVLE_1p31.1a"; transcript_id "ERVLE_1p31.1a"; locus "ERVLE_1p31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0102"; repClass "LTR"; repEnd "3438"; repFamily "ERVL"; repLeft "3318"; repStart "-2229"; chr1 rmsk exon 69442354 69442508 521 - . gene_id "ERVLE_1p31.1a"; transcript_id "ERVLE_1p31.1a"; locus "ERVLE_1p31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0102"; repClass "LTR"; repEnd "3076"; repFamily "ERVL"; repLeft "2919"; repStart "-2591"; ### ERVLE_1p31.1b ### chr1 rmsk gene 69442573 69444469 . - . gene_id "ERVLE_1p31.1b"; transcript_id "ERVLE_1p31.1b"; locus "ERVLE_1p31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0103"; model_cov "1857"; model_pct "32.8"; chr1 rmsk exon 69442573 69443509 2721 - . gene_id "ERVLE_1p31.1b"; transcript_id "ERVLE_1p31.1b"; locus "ERVLE_1p31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0103"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "2208"; repStart "-2509"; chr1 rmsk exon 69443526 69443882 663 - . gene_id "ERVLE_1p31.1b"; transcript_id "ERVLE_1p31.1b"; locus "ERVLE_1p31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0103"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "1414"; repStart "-3877"; chr1 rmsk exon 69443990 69444469 875 - . gene_id "ERVLE_1p31.1b"; transcript_id "ERVLE_1p31.1b"; locus "ERVLE_1p31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0103"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "471"; repStart "-4665"; ### MER101_1p31.1a ### chr1 rmsk gene 69527178 69530904 . - . gene_id "MER101_1p31.1a"; transcript_id "MER101_1p31.1a"; locus "MER101_1p31.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0014"; model_cov "2977"; model_pct "44.8"; chr1 rmsk exon 69527178 69527458 2271 - . gene_id "MER101_1p31.1a"; transcript_id "MER101_1p31.1a"; locus "MER101_1p31.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0014"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "167"; repStart "0"; chr1 rmsk exon 69527834 69528016 2271 - . gene_id "MER101_1p31.1a"; transcript_id "MER101_1p31.1a"; locus "MER101_1p31.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0014"; repClass "LTR"; repEnd "166"; repFamily "ERV1"; repLeft "3"; repStart "-279"; chr1 rmsk exon 69528019 69528638 2825 - . gene_id "MER101_1p31.1a"; transcript_id "MER101_1p31.1a"; locus "MER101_1p31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0014"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6005"; repStart "0"; chr1 rmsk exon 69528639 69530904 4554 - . gene_id "MER101_1p31.1a"; transcript_id "MER101_1p31.1a"; locus "MER101_1p31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0014"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "3059"; repStart "-1237"; ### HERVH_1p31.1a ### chr1 rmsk gene 70367629 70374024 . + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0031"; model_cov "6309"; model_pct "81.8"; chr1 rmsk exon 70367629 70368061 2739 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 70368062 70370821 14481 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 70370802 70372366 5937 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "6288"; repFamily "ERV1"; repLeft "-1425"; repStart "4200"; chr1 rmsk exon 70372371 70372621 1613 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4900"; chr1 rmsk exon 70372619 70373037 2407 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5594"; chr1 rmsk exon 70373031 70373591 3880 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 70373592 70374024 2655 + . gene_id "HERVH_1p31.1a"; transcript_id "HERVH_1p31.1a"; locus "HERVH_1p31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0031"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p31.1a ### chr1 rmsk gene 70559186 70562044 . - . gene_id "HERVL_1p31.1a"; transcript_id "HERVL_1p31.1a"; locus "HERVL_1p31.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0026"; model_cov "2107"; model_pct "37.3"; chr1 rmsk exon 70559186 70559248 311 - . gene_id "HERVL_1p31.1a"; transcript_id "HERVL_1p31.1a"; locus "HERVL_1p31.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0026"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "382"; repStart "-5"; chr1 rmsk exon 70559470 70559923 1690 - . gene_id "HERVL_1p31.1a"; transcript_id "HERVL_1p31.1a"; locus "HERVL_1p31.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0026"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "-107"; repStart "-82"; chr1 rmsk exon 70559924 70562044 15704 - . gene_id "HERVL_1p31.1a"; transcript_id "HERVL_1p31.1a"; locus "HERVL_1p31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0026"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3547"; repStart "0"; ### HERVH_1p31.1b ### chr1 rmsk gene 70588437 70593991 . + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0032"; model_cov "4903"; model_pct "63.6"; chr1 rmsk exon 70588437 70588793 2299 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 70588796 70591701 14821 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 70591696 70591840 805 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 70591831 70592332 3189 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 70592335 70592990 3983 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr1 rmsk exon 70592995 70593211 1253 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 70593212 70593588 2264 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 70593589 70593991 2608 + . gene_id "HERVH_1p31.1b"; transcript_id "HERVH_1p31.1b"; locus "HERVH_1p31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0032"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL18_1p31.1a ### chr1 rmsk gene 70627958 70631285 . + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0003"; model_cov "3037"; model_pct "50.2"; chr1 rmsk exon 70627958 70628355 1953 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "340"; repFamily "ERVL"; repLeft "-17"; repStart "1"; chr1 rmsk exon 70628381 70629427 2628 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "9"; chr1 rmsk exon 70629427 70629618 1189 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "-3713"; repStart "2119"; chr1 rmsk exon 70629641 70629703 425 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2390"; chr1 rmsk exon 70629703 70630569 5708 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "3585"; repFamily "ERVL"; repLeft "-2462"; repStart "2720"; chr1 rmsk exon 70630566 70630660 671 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr1 rmsk exon 70630876 70631285 1904 + . gene_id "HERVL18_1p31.1a"; transcript_id "HERVL18_1p31.1a"; locus "HERVL18_1p31.1a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0003"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### PABLA_1p31.1 ### chr1 rmsk gene 70921278 70924729 . + . gene_id "PABLA_1p31.1"; transcript_id "PABLA_1p31.1"; locus "PABLA_1p31.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0003"; model_cov "4100"; model_pct "81.8"; chr1 rmsk exon 70921278 70921396 706 + . gene_id "PABLA_1p31.1"; transcript_id "PABLA_1p31.1"; locus "PABLA_1p31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0003"; repClass "LTR"; repEnd "-307"; repFamily "ERV1"; repLeft "-5322"; repStart "-431"; chr1 rmsk exon 70921383 70921777 2344 + . gene_id "PABLA_1p31.1"; transcript_id "PABLA_1p31.1"; locus "PABLA_1p31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0003"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "-4494"; repStart "150"; chr1 rmsk exon 70921751 70921820 269 + . gene_id "PABLA_1p31.1"; transcript_id "PABLA_1p31.1"; locus "PABLA_1p31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0003"; repClass "LTR"; repEnd "732"; repFamily "ERV1"; repLeft "-4283"; repStart "674"; chr1 rmsk exon 70921825 70924729 13238 + . gene_id "PABLA_1p31.1"; transcript_id "PABLA_1p31.1"; locus "PABLA_1p31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0003"; repClass "LTR"; repEnd "4781"; repFamily "ERV1"; repLeft "-234"; repStart "1234"; ### HERVFRD_1p31.1a ### chr1 rmsk gene 71336142 71343218 . - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0003"; model_cov "5524"; model_pct "76.7"; chr1 rmsk exon 71336142 71336836 4336 - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0003"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "12"; repStart "-24"; chr1 rmsk exon 71336837 71340488 12420 - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0003"; repClass "LTR"; repEnd "7204"; repFamily "ERV1"; repLeft "2885"; repStart "-1"; chr1 rmsk exon 71340485 71341046 4025 - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0003"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1263"; repStart "-5355"; chr1 rmsk exon 71341351 71341889 4025 - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0003"; repClass "LTR"; repEnd "1262"; repFamily "ERV1"; repLeft "644"; repStart "-5943"; chr1 rmsk exon 71342528 71343218 3973 - . gene_id "HERVFRD_1p31.1a"; transcript_id "HERVFRD_1p31.1a"; locus "HERVFRD_1p31.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0003"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "9"; repStart "-12"; ### HERVP71A_1p31.1a ### chr1 rmsk gene 71502068 71510867 . + . gene_id "HERVP71A_1p31.1a"; transcript_id "HERVP71A_1p31.1a"; locus "HERVP71A_1p31.1a"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0001"; model_cov "7588"; model_pct "100.0"; chr1 rmsk exon 71502068 71502528 3495 + . gene_id "HERVP71A_1p31.1a"; transcript_id "HERVP71A_1p31.1a"; locus "HERVP71A_1p31.1a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0001"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 71502529 71505277 55409 + . gene_id "HERVP71A_1p31.1a"; transcript_id "HERVP71A_1p31.1a"; locus "HERVP71A_1p31.1a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0001"; repClass "LTR"; repEnd "2721"; repFamily "ERV1"; repLeft "-4869"; repStart "1"; chr1 rmsk exon 71505581 71510410 55409 + . gene_id "HERVP71A_1p31.1a"; transcript_id "HERVP71A_1p31.1a"; locus "HERVP71A_1p31.1a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0001"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "2722"; chr1 rmsk exon 71510415 71510867 3269 + . gene_id "HERVP71A_1p31.1a"; transcript_id "HERVP71A_1p31.1a"; locus "HERVP71A_1p31.1a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0001"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_1p31.1a ### chr1 rmsk gene 71818991 71823069 . + . gene_id "ERV316A3_1p31.1a"; transcript_id "ERV316A3_1p31.1a"; locus "ERV316A3_1p31.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0058"; model_cov "3482"; model_pct "66.6"; chr1 rmsk exon 71818991 71819086 297 + . gene_id "ERV316A3_1p31.1a"; transcript_id "ERV316A3_1p31.1a"; locus "ERV316A3_1p31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0058"; repClass "LTR"; repEnd "668"; repFamily "ERVL"; repLeft "-4558"; repStart "573"; chr1 rmsk exon 71819750 71821797 5045 + . gene_id "ERV316A3_1p31.1a"; transcript_id "ERV316A3_1p31.1a"; locus "ERV316A3_1p31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0058"; repClass "LTR"; repEnd "2843"; repFamily "ERVL"; repLeft "-2383"; repStart "639"; chr1 rmsk exon 71821916 71823069 2889 + . gene_id "ERV316A3_1p31.1a"; transcript_id "ERV316A3_1p31.1a"; locus "ERV316A3_1p31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0058"; repClass "LTR"; repEnd "4517"; repFamily "ERVL"; repLeft "-709"; repStart "3334"; ### HERVL_1p31.1b ### chr1 rmsk gene 72312365 72319126 . - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0028"; model_cov "5651"; model_pct "99.9"; chr1 rmsk exon 72312365 72312446 402 - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0028"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "361"; repStart "0"; chr1 rmsk exon 72312693 72313074 2744 - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0028"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr1 rmsk exon 72313075 72313499 42781 - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0028"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5221"; repStart "0"; chr1 rmsk exon 72313540 72318693 42781 - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0028"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "2"; repStart "-434"; chr1 rmsk exon 72318694 72319126 2961 - . gene_id "HERVL_1p31.1b"; transcript_id "HERVL_1p31.1b"; locus "HERVL_1p31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0028"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_1p31.1c ### chr1 rmsk gene 72433538 72435738 . + . gene_id "ERVLE_1p31.1c"; transcript_id "ERVLE_1p31.1c"; locus "ERVLE_1p31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0110"; model_cov "2246"; model_pct "39.6"; chr1 rmsk exon 72433538 72435738 3908 + . gene_id "ERVLE_1p31.1c"; transcript_id "ERVLE_1p31.1c"; locus "ERVLE_1p31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0110"; repClass "LTR"; repEnd "4023"; repFamily "ERVL"; repLeft "-1644"; repStart "1777"; ### HERVL32_1p31.1a ### chr1 rmsk gene 72536817 72540097 . - . gene_id "HERVL32_1p31.1a"; transcript_id "HERVL32_1p31.1a"; locus "HERVL32_1p31.1a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0001"; model_cov "1268"; model_pct "37.1"; chr1 rmsk exon 72536817 72537297 2055 - . gene_id "HERVL32_1p31.1a"; transcript_id "HERVL32_1p31.1a"; locus "HERVL32_1p31.1a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0001"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 72537308 72537504 500 - . gene_id "HERVL32_1p31.1a"; transcript_id "HERVL32_1p31.1a"; locus "HERVL32_1p31.1a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0001"; repClass "LTR"; repEnd "3411"; repFamily "ERVL"; repLeft "3215"; repStart "-7"; chr1 rmsk exon 72537562 72537701 397 - . gene_id "HERVL32_1p31.1a"; transcript_id "HERVL32_1p31.1a"; locus "HERVL32_1p31.1a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0001"; repClass "LTR"; repEnd "3205"; repFamily "ERVL"; repLeft "3056"; repStart "-213"; chr1 rmsk exon 72539151 72540097 7151 - . gene_id "HERVL32_1p31.1a"; transcript_id "HERVL32_1p31.1a"; locus "HERVL32_1p31.1a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0001"; repClass "LTR"; repEnd "1818"; repFamily "ERVL"; repLeft "895"; repStart "-1600"; ### HERVL32_1p31.1b ### chr1 rmsk gene 72540629 72543692 . - . gene_id "HERVL32_1p31.1b"; transcript_id "HERVL32_1p31.1b"; locus "HERVL32_1p31.1b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0002"; model_cov "2499"; model_pct "73.1"; chr1 rmsk exon 72540629 72542211 7151 - . gene_id "HERVL32_1p31.1b"; transcript_id "HERVL32_1p31.1b"; locus "HERVL32_1p31.1b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0002"; repClass "LTR"; repEnd "2722"; repFamily "ERVL"; repLeft "1142"; repStart "-696"; chr1 rmsk exon 72542299 72543203 3279 - . gene_id "HERVL32_1p31.1b"; transcript_id "HERVL32_1p31.1b"; locus "HERVL32_1p31.1b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0002"; repClass "LTR"; repEnd "970"; repFamily "ERVL"; repLeft "51"; repStart "-2448"; chr1 rmsk exon 72543261 72543692 2275 - . gene_id "HERVL32_1p31.1b"; transcript_id "HERVL32_1p31.1b"; locus "HERVL32_1p31.1b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0002"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVFRD_1p31.1b ### chr1 rmsk gene 72688490 72694815 . - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0005"; model_cov "5611"; model_pct "77.9"; chr1 rmsk exon 72688490 72688776 1579 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0005"; repClass "LTR"; repEnd "287"; repFamily "ERV1"; repLeft "2"; repStart "-447"; chr1 rmsk exon 72688777 72690116 6124 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0005"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "5200"; repStart "-8"; chr1 rmsk exon 72690365 72690636 1608 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0005"; repClass "LTR"; repEnd "5197"; repFamily "ERV1"; repLeft "4926"; repStart "-2008"; chr1 rmsk exon 72690633 72692166 7046 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0005"; repClass "LTR"; repEnd "4356"; repFamily "ERV1"; repLeft "2862"; repStart "-2849"; chr1 rmsk exon 72692266 72692315 3904 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0005"; repClass "LTR"; repEnd "1852"; repFamily "ERV1"; repLeft "1792"; repStart "-5353"; chr1 rmsk exon 72692365 72694089 5960 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0005"; repClass "LTR"; repEnd "1791"; repFamily "ERV1"; repLeft "2"; repStart "-5414"; chr1 rmsk exon 72694127 72694815 3636 - . gene_id "HERVFRD_1p31.1b"; transcript_id "HERVFRD_1p31.1b"; locus "HERVFRD_1p31.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0005"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "27"; repStart "-12"; ### HERVL40_1p31.1a ### chr1 rmsk gene 72767328 72771894 . + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0007"; model_cov "2640"; model_pct "47.7"; chr1 rmsk exon 72767328 72767936 1118 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "-3919"; repStart "938"; chr1 rmsk exon 72767949 72768114 450 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "-2814"; repStart "2535"; chr1 rmsk exon 72768226 72769015 1465 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "3587"; repFamily "ERVL"; repLeft "-1943"; repStart "2728"; chr1 rmsk exon 72769015 72769672 1796 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "3984"; chr1 rmsk exon 72771135 72771454 839 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5279"; chr1 rmsk exon 72771455 72771894 1573 + . gene_id "HERVL40_1p31.1a"; transcript_id "HERVL40_1p31.1a"; locus "HERVL40_1p31.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0007"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### MER41_1p31.1 ### chr1 rmsk gene 72811822 72812848 . - . gene_id "MER41_1p31.1"; transcript_id "MER41_1p31.1"; locus "MER41_1p31.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0014"; model_cov "1031"; model_pct "17.3"; chr1 rmsk exon 72811822 72812848 4109 - . gene_id "MER41_1p31.1"; transcript_id "MER41_1p31.1"; locus "MER41_1p31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0014"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "3010"; repStart "-1905"; ### ERVLB4_1p31.1a ### chr1 rmsk gene 72854178 72855507 . - . gene_id "ERVLB4_1p31.1a"; transcript_id "ERVLB4_1p31.1a"; locus "ERVLB4_1p31.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0032"; model_cov "681"; model_pct "11.9"; chr1 rmsk exon 72854178 72854294 555 - . gene_id "ERVLB4_1p31.1a"; transcript_id "ERVLB4_1p31.1a"; locus "ERVLB4_1p31.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0032"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "311"; repStart "-95"; chr1 rmsk exon 72854314 72855015 2424 - . gene_id "ERVLB4_1p31.1a"; transcript_id "ERVLB4_1p31.1a"; locus "ERVLB4_1p31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0032"; repClass "LTR"; repEnd "641"; repFamily "ERVL"; repLeft "-40"; repStart "-5073"; chr1 rmsk exon 72855075 72855507 1814 - . gene_id "ERVLB4_1p31.1a"; transcript_id "ERVLB4_1p31.1a"; locus "ERVLB4_1p31.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0032"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "3"; repStart "-101"; ### HERVL_1p31.1c ### chr1 rmsk gene 72877408 72878678 . + . gene_id "HERVL_1p31.1c"; transcript_id "HERVL_1p31.1c"; locus "HERVL_1p31.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0029"; model_cov "734"; model_pct "13.0"; chr1 rmsk exon 72877408 72877632 1579 + . gene_id "HERVL_1p31.1c"; transcript_id "HERVL_1p31.1c"; locus "HERVL_1p31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0029"; repClass "LTR"; repEnd "4984"; repFamily "ERVL"; repLeft "-670"; repStart "4759"; chr1 rmsk exon 72877616 72878130 2706 + . gene_id "HERVL_1p31.1c"; transcript_id "HERVL_1p31.1c"; locus "HERVL_1p31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0029"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5145"; chr1 rmsk exon 72878139 72878678 1570 + . gene_id "HERVL_1p31.1c"; transcript_id "HERVL_1p31.1c"; locus "HERVL_1p31.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0029"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "15"; ### HERVH_1p31.1c ### chr1 rmsk gene 72980446 72985490 . - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0033"; model_cov "4228"; model_pct "54.8"; chr1 rmsk exon 72980446 72980896 3348 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 72980897 72981260 2162 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 72981259 72981476 1378 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 72981478 72982035 2504 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4664"; repStart "-2564"; chr1 rmsk exon 72982029 72982173 880 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "3140"; repStart "-4426"; chr1 rmsk exon 72982168 72985038 15746 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 72985041 72985490 3399 - . gene_id "HERVH_1p31.1c"; transcript_id "HERVH_1p31.1c"; locus "HERVH_1p31.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0033"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1p31.1d ### chr1 rmsk gene 72987801 72993602 . - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0034"; model_cov "4919"; model_pct "63.8"; chr1 rmsk exon 72987801 72988249 3439 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 72988250 72988629 2504 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 72988628 72988849 1362 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 72988847 72989502 4363 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 72989505 72990007 3219 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 72989998 72990147 925 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 72990127 72993153 19555 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 72993156 72993602 3319 - . gene_id "HERVH_1p31.1d"; transcript_id "HERVH_1p31.1d"; locus "HERVH_1p31.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0034"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_1p31.1d ### chr1 rmsk gene 73115957 73118649 . + . gene_id "ERVLE_1p31.1d"; transcript_id "ERVLE_1p31.1d"; locus "ERVLE_1p31.1d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0112"; model_cov "1854"; model_pct "32.7"; chr1 rmsk exon 73115957 73116493 1217 + . gene_id "ERVLE_1p31.1d"; transcript_id "ERVLE_1p31.1d"; locus "ERVLE_1p31.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0112"; repClass "LTR"; repEnd "617"; repFamily "ERVL"; repLeft "-46"; repStart "3"; chr1 rmsk exon 73116570 73117454 2188 + . gene_id "ERVLE_1p31.1d"; transcript_id "ERVLE_1p31.1d"; locus "ERVLE_1p31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0112"; repClass "LTR"; repEnd "876"; repFamily "ERVL"; repLeft "-4791"; repStart "-38"; chr1 rmsk exon 73117701 73118286 2015 + . gene_id "ERVLE_1p31.1d"; transcript_id "ERVLE_1p31.1d"; locus "ERVLE_1p31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0112"; repClass "LTR"; repEnd "1161"; repFamily "ERVL"; repLeft "-4506"; repStart "566"; chr1 rmsk exon 73118306 73118649 1277 + . gene_id "ERVLE_1p31.1d"; transcript_id "ERVLE_1p31.1d"; locus "ERVLE_1p31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0112"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "-4066"; repStart "1256"; ### ERVLB4_1p31.1b ### chr1 rmsk gene 73119379 73122614 . + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0033"; model_cov "2247"; model_pct "39.3"; chr1 rmsk exon 73119379 73120466 5238 + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0033"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "-2857"; repStart "1739"; chr1 rmsk exon 73120462 73120624 1095 + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0033"; repClass "LTR"; repEnd "3578"; repFamily "ERVL"; repLeft "-2136"; repStart "3415"; chr1 rmsk exon 73120796 73121465 3474 + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0033"; repClass "LTR"; repEnd "5382"; repFamily "ERVL"; repLeft "-332"; repStart "4691"; chr1 rmsk exon 73121876 73122145 1156 + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0033"; repClass "LTR"; repEnd "5706"; repFamily "ERVL"; repLeft "-8"; repStart "5431"; chr1 rmsk exon 73122152 73122614 1856 + . gene_id "ERVLB4_1p31.1b"; transcript_id "ERVLB4_1p31.1b"; locus "ERVLB4_1p31.1b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0033"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-22"; repStart "-102"; ### ERVLE_1p31.1e ### chr1 rmsk gene 73170807 73172644 . - . gene_id "ERVLE_1p31.1e"; transcript_id "ERVLE_1p31.1e"; locus "ERVLE_1p31.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0113"; model_cov "1281"; model_pct "22.6"; chr1 rmsk exon 73170807 73170878 296 - . gene_id "ERVLE_1p31.1e"; transcript_id "ERVLE_1p31.1e"; locus "ERVLE_1p31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0113"; repClass "LTR"; repEnd "5525"; repFamily "ERVL"; repLeft "5454"; repStart "-142"; chr1 rmsk exon 73170931 73171600 1155 - . gene_id "ERVLE_1p31.1e"; transcript_id "ERVLE_1p31.1e"; locus "ERVLE_1p31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0113"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4381"; repStart "-583"; chr1 rmsk exon 73171642 73171857 493 - . gene_id "ERVLE_1p31.1e"; transcript_id "ERVLE_1p31.1e"; locus "ERVLE_1p31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0113"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "4376"; repStart "-1074"; chr1 rmsk exon 73172360 73172644 509 - . gene_id "ERVLE_1p31.1e"; transcript_id "ERVLE_1p31.1e"; locus "ERVLE_1p31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0113"; repClass "LTR"; repEnd "3360"; repFamily "ERVL"; repLeft "3070"; repStart "-2307"; ### ERVLE_1p31.1f ### chr1 rmsk gene 73172777 73173471 . - . gene_id "ERVLE_1p31.1f"; transcript_id "ERVLE_1p31.1f"; locus "ERVLE_1p31.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0114"; model_cov "586"; model_pct "10.3"; chr1 rmsk exon 73172777 73173192 612 - . gene_id "ERVLE_1p31.1f"; transcript_id "ERVLE_1p31.1f"; locus "ERVLE_1p31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0114"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3194"; repStart "-2055"; chr1 rmsk exon 73173315 73173471 399 - . gene_id "ERVLE_1p31.1f"; transcript_id "ERVLE_1p31.1f"; locus "ERVLE_1p31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0114"; repClass "LTR"; repEnd "2414"; repFamily "ERVL"; repLeft "2246"; repStart "-3253"; ### MER101_1p31.1b ### chr1 rmsk gene 73340002 73345431 . - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0015"; model_cov "3568"; model_pct "53.7"; chr1 rmsk exon 73340002 73340055 290 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "6094"; repFamily "ERV1"; repLeft "6041"; repStart "-545"; chr1 rmsk exon 73340050 73341185 3725 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "4456"; repFamily "ERV1"; repLeft "2806"; repStart "-2183"; chr1 rmsk exon 73341477 73342268 3725 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "3602"; repFamily "ERV1"; repLeft "2826"; repStart "-3037"; chr1 rmsk exon 73342294 73342400 3725 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "2825"; repFamily "ERV1"; repLeft "2689"; repStart "-3814"; chr1 rmsk exon 73342525 73343109 1441 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "2676"; repFamily "ERV1"; repLeft "1773"; repStart "-3963"; chr1 rmsk exon 73345376 73345431 425 - . gene_id "MER101_1p31.1b"; transcript_id "MER101_1p31.1b"; locus "MER101_1p31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0015"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "241"; repStart "-6348"; ### MER101_1p31.1c ### chr1 rmsk gene 73345442 73346122 . - . gene_id "MER101_1p31.1c"; transcript_id "MER101_1p31.1c"; locus "MER101_1p31.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0016"; model_cov "1022"; model_pct "15.4"; chr1 rmsk exon 73345442 73346122 1326 - . gene_id "MER101_1p31.1c"; transcript_id "MER101_1p31.1c"; locus "MER101_1p31.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0016"; repClass "LTR"; repEnd "2195"; repFamily "ERV1"; repLeft "1173"; repStart "-4444"; ### HERVL40_1p31.1b ### chr1 rmsk gene 73698733 73700492 . - . gene_id "HERVL40_1p31.1b"; transcript_id "HERVL40_1p31.1b"; locus "HERVL40_1p31.1b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0008"; model_cov "610"; model_pct "11.0"; chr1 rmsk exon 73698733 73698972 730 - . gene_id "HERVL40_1p31.1b"; transcript_id "HERVL40_1p31.1b"; locus "HERVL40_1p31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0008"; repClass "LTR"; repEnd "5510"; repFamily "ERVL"; repLeft "5278"; repStart "-20"; chr1 rmsk exon 73700000 73700324 755 - . gene_id "HERVL40_1p31.1b"; transcript_id "HERVL40_1p31.1b"; locus "HERVL40_1p31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0008"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4432"; repStart "-870"; chr1 rmsk exon 73700325 73700492 645 - . gene_id "HERVL40_1p31.1b"; transcript_id "HERVL40_1p31.1b"; locus "HERVL40_1p31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0008"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "4143"; repStart "-1237"; ### ERVL_1p31.1 ### chr1 rmsk gene 73719202 73725016 . + . gene_id "ERVL_1p31.1"; transcript_id "ERVL_1p31.1"; locus "ERVL_1p31.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0012"; model_cov "5038"; model_pct "87.5"; chr1 rmsk exon 73719202 73719684 16843 + . gene_id "ERVL_1p31.1"; transcript_id "ERVL_1p31.1"; locus "ERVL_1p31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0012"; repClass "LTR"; repEnd "1255"; repFamily "ERVL"; repLeft "-4502"; repStart "760"; chr1 rmsk exon 73719964 73720017 16843 + . gene_id "ERVL_1p31.1"; transcript_id "ERVL_1p31.1"; locus "ERVL_1p31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0012"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "-4440"; repStart "1256"; chr1 rmsk exon 73720147 73724526 17448 + . gene_id "ERVL_1p31.1"; transcript_id "ERVL_1p31.1"; locus "ERVL_1p31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0012"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "1275"; chr1 rmsk exon 73724527 73725016 1692 + . gene_id "ERVL_1p31.1"; transcript_id "ERVL_1p31.1"; locus "ERVL_1p31.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0012"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVP71A_1p31.1b ### chr1 rmsk gene 74394411 74400944 . + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0002"; model_cov "5006"; model_pct "66.0"; chr1 rmsk exon 74394411 74394762 4264 + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0002"; repClass "LTR"; repEnd "365"; repFamily "ERV1"; repLeft "-245"; repStart "1"; chr1 rmsk exon 74395065 74395315 4264 + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0002"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "-2"; repStart "366"; chr1 rmsk exon 74395318 74396999 7231 + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0002"; repClass "LTR"; repEnd "1746"; repFamily "ERV1"; repLeft "-5844"; repStart "2"; chr1 rmsk exon 74397383 74398876 17977 + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0002"; repClass "LTR"; repEnd "5044"; repFamily "ERV1"; repLeft "-2546"; repStart "3550"; chr1 rmsk exon 74399180 74400944 17977 + . gene_id "HERVP71A_1p31.1b"; transcript_id "HERVP71A_1p31.1b"; locus "HERVP71A_1p31.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0002"; repClass "LTR"; repEnd "6813"; repFamily "ERV1"; repLeft "-777"; repStart "5045"; ### HERV9_1p31.1 ### chr1 rmsk gene 74740033 74745644 . - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0008"; model_cov "3500"; model_pct "41.5"; chr1 rmsk exon 74740033 74740917 6149 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 74741115 74742798 13395 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "6461"; repFamily "ERV1"; repLeft "4775"; repStart "-1975"; chr1 rmsk exon 74742798 74744488 13000 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "6015"; repFamily "ERV1"; repLeft "4327"; repStart "-2421"; chr1 rmsk exon 74744488 74744614 855 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "3189"; repFamily "ERV1"; repLeft "3063"; repStart "-5247"; chr1 rmsk exon 74744664 74744894 1747 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "437"; repStart "0"; chr1 rmsk exon 74744895 74745644 5256 - . gene_id "HERV9_1p31.1"; transcript_id "HERV9_1p31.1"; locus "HERV9_1p31.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0008"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_1p31.1b ### chr1 rmsk gene 74804194 74805454 . - . gene_id "ERV316A3_1p31.1b"; transcript_id "ERV316A3_1p31.1b"; locus "ERV316A3_1p31.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0060"; model_cov "1246"; model_pct "23.8"; chr1 rmsk exon 74804194 74805384 2417 - . gene_id "ERV316A3_1p31.1b"; transcript_id "ERV316A3_1p31.1b"; locus "ERV316A3_1p31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0060"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "868"; repStart "-3112"; chr1 rmsk exon 74805387 74805454 228 - . gene_id "ERV316A3_1p31.1b"; transcript_id "ERV316A3_1p31.1b"; locus "ERV316A3_1p31.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0060"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "120"; repStart "-249"; ### ERVLE_1p31.1g ### chr1 rmsk gene 75054109 75057604 . + . gene_id "ERVLE_1p31.1g"; transcript_id "ERVLE_1p31.1g"; locus "ERVLE_1p31.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0116"; model_cov "2071"; model_pct "36.5"; chr1 rmsk exon 75054109 75054983 1460 + . gene_id "ERVLE_1p31.1g"; transcript_id "ERVLE_1p31.1g"; locus "ERVLE_1p31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0116"; repClass "LTR"; repEnd "912"; repFamily "ERVL"; repLeft "-4755"; repStart "41"; chr1 rmsk exon 75056466 75057604 1715 + . gene_id "ERVLE_1p31.1g"; transcript_id "ERVLE_1p31.1g"; locus "ERVLE_1p31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0116"; repClass "LTR"; repEnd "2800"; repFamily "ERVL"; repLeft "-2867"; repStart "1600"; ### ERVLE_1p31.1h ### chr1 rmsk gene 75288595 75290184 . + . gene_id "ERVLE_1p31.1h"; transcript_id "ERVLE_1p31.1h"; locus "ERVLE_1p31.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0117"; model_cov "999"; model_pct "17.6"; chr1 rmsk exon 75288595 75289160 1497 + . gene_id "ERVLE_1p31.1h"; transcript_id "ERVLE_1p31.1h"; locus "ERVLE_1p31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0117"; repClass "LTR"; repEnd "2894"; repFamily "ERVL"; repLeft "-2773"; repStart "2309"; chr1 rmsk exon 75289171 75289404 562 + . gene_id "ERVLE_1p31.1h"; transcript_id "ERVLE_1p31.1h"; locus "ERVLE_1p31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0117"; repClass "LTR"; repEnd "3324"; repFamily "ERVL"; repLeft "-2343"; repStart "3064"; chr1 rmsk exon 75290029 75290184 534 + . gene_id "ERVLE_1p31.1h"; transcript_id "ERVLE_1p31.1h"; locus "ERVLE_1p31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0117"; repClass "LTR"; repEnd "4200"; repFamily "ERVL"; repLeft "-1467"; repStart "4046"; ### HML2_1p31.1 ### chr1 rmsk gene 75377086 75383458 . + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0007"; model_cov "4355"; model_pct "57.8"; chr1 rmsk exon 75377086 75378053 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 75378054 75380597 22845 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "2543"; repFamily "ERVK"; repLeft "-4993"; repStart "1"; chr1 rmsk exon 75380582 75380780 1643 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5336"; chr1 rmsk exon 75380780 75382395 14607 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr1 rmsk exon 75382491 75383458 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV4_1p31.1 ### chr1 rmsk gene 75688749 75689585 . + . gene_id "HERV4_1p31.1"; transcript_id "HERV4_1p31.1"; locus "HERV4_1p31.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0006"; model_cov "841"; model_pct "12.9"; chr1 rmsk exon 75688749 75689585 1127 + . gene_id "HERV4_1p31.1"; transcript_id "HERV4_1p31.1"; locus "HERV4_1p31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0006"; repClass "LTR"; repEnd "3861"; repFamily "ERV1"; repLeft "-2678"; repStart "3020"; ### MER4B_1p31.1a ### chr1 rmsk gene 75717681 75718483 . + . gene_id "MER4B_1p31.1a"; transcript_id "MER4B_1p31.1a"; locus "MER4B_1p31.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0010"; model_cov "820"; model_pct "12.1"; chr1 rmsk exon 75717681 75718483 3750 + . gene_id "MER4B_1p31.1a"; transcript_id "MER4B_1p31.1a"; locus "MER4B_1p31.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0010"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "-1799"; repStart "4139"; ### ERVLB4_1p31.1c ### chr1 rmsk gene 75891930 75896433 . + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0034"; model_cov "3124"; model_pct "54.7"; chr1 rmsk exon 75891930 75892377 2128 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-41"; repStart "3"; chr1 rmsk exon 75892413 75892467 2128 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "516"; chr1 rmsk exon 75892479 75892701 1400 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-5336"; repStart "156"; chr1 rmsk exon 75893206 75894390 6557 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "1684"; repFamily "ERVL"; repLeft "-4030"; repStart "358"; chr1 rmsk exon 75894388 75895915 8829 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4138"; chr1 rmsk exon 75895916 75896335 1872 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-56"; repStart "1"; chr1 rmsk exon 75896395 75896433 1872 + . gene_id "ERVLB4_1p31.1c"; transcript_id "ERVLB4_1p31.1c"; locus "ERVLB4_1p31.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0034"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "-1"; repStart "501"; ### ERVLE_1p31.1i ### chr1 rmsk gene 76852898 76853540 . - . gene_id "ERVLE_1p31.1i"; transcript_id "ERVLE_1p31.1i"; locus "ERVLE_1p31.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0118"; model_cov "698"; model_pct "12.3"; chr1 rmsk exon 76852898 76853540 690 - . gene_id "ERVLE_1p31.1i"; transcript_id "ERVLE_1p31.1i"; locus "ERVLE_1p31.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0118"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "4313"; repStart "-656"; ### HERVL_1p31.1d ### chr1 rmsk gene 76874387 76880817 . - . gene_id "HERVL_1p31.1d"; transcript_id "HERVL_1p31.1d"; locus "HERVL_1p31.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0031"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 76874387 76874825 2813 - . gene_id "HERVL_1p31.1d"; transcript_id "HERVL_1p31.1d"; locus "HERVL_1p31.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0031"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 76874826 76880411 41619 - . gene_id "HERVL_1p31.1d"; transcript_id "HERVL_1p31.1d"; locus "HERVL_1p31.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0031"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 76880412 76880817 2461 - . gene_id "HERVL_1p31.1d"; transcript_id "HERVL_1p31.1d"; locus "HERVL_1p31.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0031"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_1p31.1e ### chr1 rmsk gene 76894813 76900387 . - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0036"; model_cov "4919"; model_pct "63.8"; chr1 rmsk exon 76894813 76895220 2633 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 76895221 76895600 2421 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 76895599 76895819 1404 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 76895817 76896479 4233 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 76896482 76896969 3145 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 76896960 76897106 899 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 76897086 76899974 16426 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 76899977 76900387 2729 - . gene_id "HERVH_1p31.1e"; transcript_id "HERVH_1p31.1e"; locus "HERVH_1p31.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0036"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_1p31.1e ### chr1 rmsk gene 77182232 77189846 . + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0032"; model_cov "5591"; model_pct "98.9"; chr1 rmsk exon 77182232 77182287 247 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "53"; repFamily "ERVL"; repLeft "-391"; repStart "1"; chr1 rmsk exon 77182570 77182625 325 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "389"; chr1 rmsk exon 77182626 77182703 603 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "78"; repFamily "ERVL"; repLeft "-5576"; repStart "1"; chr1 rmsk exon 77182764 77187777 42361 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "-444"; repStart "139"; chr1 rmsk exon 77188857 77189318 42361 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5211"; chr1 rmsk exon 77189319 77189694 2778 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr1 rmsk exon 77189750 77189846 2778 + . gene_id "HERVL_1p31.1e"; transcript_id "HERVL_1p31.1e"; locus "HERVL_1p31.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0032"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "385"; ### MER34B_1p31.1a ### chr1 rmsk gene 77244045 77245768 . - . gene_id "MER34B_1p31.1a"; transcript_id "MER34B_1p31.1a"; locus "MER34B_1p31.1a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0007"; model_cov "1330"; model_pct "24.8"; chr1 rmsk exon 77244045 77244208 540 - . gene_id "MER34B_1p31.1a"; transcript_id "MER34B_1p31.1a"; locus "MER34B_1p31.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0007"; repClass "LTR"; repEnd "3016"; repFamily "ERV1"; repLeft "2839"; repStart "-2340"; chr1 rmsk exon 77244324 77245768 2746 - . gene_id "MER34B_1p31.1a"; transcript_id "MER34B_1p31.1a"; locus "MER34B_1p31.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0007"; repClass "LTR"; repEnd "2398"; repFamily "ERV1"; repLeft "1245"; repStart "-2958"; ### ERVLE_1p31.1j ### chr1 rmsk gene 77706472 77708145 . + . gene_id "ERVLE_1p31.1j"; transcript_id "ERVLE_1p31.1j"; locus "ERVLE_1p31.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0121"; model_cov "1296"; model_pct "22.9"; chr1 rmsk exon 77706472 77707134 1813 + . gene_id "ERVLE_1p31.1j"; transcript_id "ERVLE_1p31.1j"; locus "ERVLE_1p31.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0121"; repClass "LTR"; repEnd "5016"; repFamily "ERVL"; repLeft "-651"; repStart "4299"; chr1 rmsk exon 77707624 77708145 531 + . gene_id "ERVLE_1p31.1j"; transcript_id "ERVLE_1p31.1j"; locus "ERVLE_1p31.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0121"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "-5"; repStart "5083"; ### HERVS71_1p31.1 ### chr1 rmsk gene 78198910 78200628 . + . gene_id "HERVS71_1p31.1"; transcript_id "HERVS71_1p31.1"; locus "HERVS71_1p31.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0002"; model_cov "1090"; model_pct "12.1"; chr1 rmsk exon 78198910 78198987 524 + . gene_id "HERVS71_1p31.1"; transcript_id "HERVS71_1p31.1"; locus "HERVS71_1p31.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0002"; repClass "LTR"; repEnd "77"; repFamily "ERV1"; repLeft "-481"; repStart "1"; chr1 rmsk exon 78198989 78199756 4810 + . gene_id "HERVS71_1p31.1"; transcript_id "HERVS71_1p31.1"; locus "HERVS71_1p31.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0002"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "7011"; chr1 rmsk exon 78199754 78200067 1914 + . gene_id "HERVS71_1p31.1"; transcript_id "HERVS71_1p31.1"; locus "HERVS71_1p31.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0002"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr1 rmsk exon 78200068 78200628 4215 + . gene_id "HERVS71_1p31.1"; transcript_id "HERVS71_1p31.1"; locus "HERVS71_1p31.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0002"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p31.1k ### chr1 rmsk gene 78324273 78326208 . - . gene_id "ERVLE_1p31.1k"; transcript_id "ERVLE_1p31.1k"; locus "ERVLE_1p31.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0125"; model_cov "1833"; model_pct "32.3"; chr1 rmsk exon 78324273 78324599 1195 - . gene_id "ERVLE_1p31.1k"; transcript_id "ERVLE_1p31.1k"; locus "ERVLE_1p31.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0125"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5331"; repStart "0"; chr1 rmsk exon 78324799 78325862 4079 - . gene_id "ERVLE_1p31.1k"; transcript_id "ERVLE_1p31.1k"; locus "ERVLE_1p31.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0125"; repClass "LTR"; repEnd "4950"; repFamily "ERVL"; repLeft "3814"; repStart "-717"; chr1 rmsk exon 78325858 78326208 1621 - . gene_id "ERVLE_1p31.1k"; transcript_id "ERVLE_1p31.1k"; locus "ERVLE_1p31.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0125"; repClass "LTR"; repEnd "2567"; repFamily "ERVL"; repLeft "2206"; repStart "-3100"; ### HERVH_1p31.1f ### chr1 rmsk gene 78872187 78880915 . + . gene_id "HERVH_1p31.1f"; transcript_id "HERVH_1p31.1f"; locus "HERVH_1p31.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0037"; model_cov "7712"; model_pct "100.0"; chr1 rmsk exon 78872187 78872619 3433 + . gene_id "HERVH_1p31.1f"; transcript_id "HERVH_1p31.1f"; locus "HERVH_1p31.1f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0037"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 78872620 78880488 22205 + . gene_id "HERVH_1p31.1f"; transcript_id "HERVH_1p31.1f"; locus "HERVH_1p31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0037"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 78880489 78880915 3237 + . gene_id "HERVH_1p31.1f"; transcript_id "HERVH_1p31.1f"; locus "HERVH_1p31.1f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0037"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_1p31.1a ### chr1 rmsk gene 78966119 78971684 . + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0004"; model_cov "4391"; model_pct "84.2"; chr1 rmsk exon 78966119 78966435 1278 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0004"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 78966438 78966982 2261 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0004"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "3"; chr1 rmsk exon 78966960 78968232 8402 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0004"; repClass "LTR"; repEnd "2661"; repFamily "ERV1"; repLeft "-2556"; repStart "1393"; chr1 rmsk exon 78968766 78971277 16937 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0004"; repClass "LTR"; repEnd "5204"; repFamily "ERV1"; repLeft "-13"; repStart "2656"; chr1 rmsk exon 78971366 78971376 16937 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0004"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "5205"; chr1 rmsk exon 78971377 78971684 1283 + . gene_id "MER61_1p31.1a"; transcript_id "MER61_1p31.1a"; locus "MER61_1p31.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0004"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_1p31.1d ### chr1 rmsk gene 79143110 79143725 . + . gene_id "ERVLB4_1p31.1d"; transcript_id "ERVLB4_1p31.1d"; locus "ERVLB4_1p31.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0035"; model_cov "630"; model_pct "11.0"; chr1 rmsk exon 79143110 79143725 3647 + . gene_id "ERVLB4_1p31.1d"; transcript_id "ERVLB4_1p31.1d"; locus "ERVLB4_1p31.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0035"; repClass "LTR"; repEnd "3566"; repFamily "ERVL"; repLeft "-2148"; repStart "2936"; ### HERVH_1p31.1g ### chr1 rmsk gene 79488608 79494123 . - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0038"; model_cov "4904"; model_pct "63.6"; chr1 rmsk exon 79488608 79489017 2338 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; chr1 rmsk exon 79489018 79489392 2354 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 79489393 79489608 1407 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 79489610 79490260 4291 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 79490263 79490764 3451 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 79490757 79490899 818 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr1 rmsk exon 79490894 79493706 15806 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 79493709 79494123 2277 - . gene_id "HERVH_1p31.1g"; transcript_id "HERVH_1p31.1g"; locus "HERVH_1p31.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0038"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_1p31.1e ### chr1 rmsk gene 79548566 79551834 . + . gene_id "ERVLB4_1p31.1e"; transcript_id "ERVLB4_1p31.1e"; locus "ERVLB4_1p31.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0036"; model_cov "3348"; model_pct "58.6"; chr1 rmsk exon 79548566 79549962 8309 + . gene_id "ERVLB4_1p31.1e"; transcript_id "ERVLB4_1p31.1e"; locus "ERVLB4_1p31.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0036"; repClass "LTR"; repEnd "3018"; repFamily "ERVL"; repLeft "-2696"; repStart "1604"; chr1 rmsk exon 79550119 79551834 8259 + . gene_id "ERVLB4_1p31.1e"; transcript_id "ERVLB4_1p31.1e"; locus "ERVLB4_1p31.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0036"; repClass "LTR"; repEnd "4812"; repFamily "ERVL"; repLeft "-902"; repStart "2878"; ### MER34B_1p31.1b ### chr1 rmsk gene 79606846 79610172 . + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0010"; model_cov "703"; model_pct "13.1"; chr1 rmsk exon 79606846 79606881 535 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-5213"; repStart "107"; chr1 rmsk exon 79606909 79607060 535 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "-5071"; repStart "144"; chr1 rmsk exon 79607061 79607173 337 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "-273"; repStart "181"; chr1 rmsk exon 79607179 79607382 482 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "628"; repFamily "ERV1"; repLeft "-4728"; repStart "408"; chr1 rmsk exon 79607448 79607685 341 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "-4158"; repStart "1028"; chr1 rmsk exon 79610034 79610172 436 + . gene_id "MER34B_1p31.1b"; transcript_id "MER34B_1p31.1b"; locus "MER34B_1p31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0010"; repClass "LTR"; repEnd "3319"; repFamily "ERV1"; repLeft "-2037"; repStart "3183"; ### MER101_1p31.1d ### chr1 rmsk gene 79607758 79608919 . + . gene_id "MER101_1p31.1d"; transcript_id "MER101_1p31.1d"; locus "MER101_1p31.1d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0017"; model_cov "1366"; model_pct "20.6"; chr1 rmsk exon 79607758 79607901 429 + . gene_id "MER101_1p31.1d"; transcript_id "MER101_1p31.1d"; locus "MER101_1p31.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0017"; repClass "LTR"; repEnd "3368"; repFamily "ERV1"; repLeft "-3271"; repStart "3166"; chr1 rmsk exon 79608217 79608919 1049 + . gene_id "MER101_1p31.1d"; transcript_id "MER101_1p31.1d"; locus "MER101_1p31.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0017"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-2561"; repStart "2914"; ### MER101_1p31.1e ### chr1 rmsk gene 79609322 79610025 . + . gene_id "MER101_1p31.1e"; transcript_id "MER101_1p31.1e"; locus "MER101_1p31.1e"; category "internal"; intModel "MER101-int"; locid "MER101-int_0018"; model_cov "716"; model_pct "10.8"; chr1 rmsk exon 79609322 79610025 2043 + . gene_id "MER101_1p31.1e"; transcript_id "MER101_1p31.1e"; locus "MER101_1p31.1e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0018"; repClass "LTR"; repEnd "3932"; repFamily "ERV1"; repLeft "-2707"; repStart "3216"; ### HERVH_1p31.1h ### chr1 rmsk gene 79638762 79644487 . - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0039"; model_cov "4903"; model_pct "63.6"; chr1 rmsk exon 79638762 79639165 2626 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 79639166 79639542 2455 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 79639543 79639763 1321 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 79639761 79640422 4344 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 79640425 79640927 3432 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 79640918 79641056 733 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3146"; repStart "-4423"; chr1 rmsk exon 79641057 79644080 20203 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 79644083 79644487 2654 - . gene_id "HERVH_1p31.1h"; transcript_id "HERVH_1p31.1h"; locus "HERVH_1p31.1h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0039"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1p31.1i ### chr1 rmsk gene 79696342 79702062 . - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0040"; model_cov "4910"; model_pct "63.7"; chr1 rmsk exon 79696342 79696775 2658 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 79696777 79697150 2561 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7322"; repStart "-1"; chr1 rmsk exon 79697149 79697370 1399 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 79697368 79698052 4035 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 79698055 79698557 3475 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 79698548 79698695 819 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 79698690 79701630 19720 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 79701631 79702062 2590 - . gene_id "HERVH_1p31.1i"; transcript_id "HERVH_1p31.1i"; locus "HERVH_1p31.1i"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0040"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1p31.1l ### chr1 rmsk gene 79818091 79819267 . + . gene_id "ERVLE_1p31.1l"; transcript_id "ERVLE_1p31.1l"; locus "ERVLE_1p31.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0127"; model_cov "799"; model_pct "14.1"; chr1 rmsk exon 79818091 79818562 975 + . gene_id "ERVLE_1p31.1l"; transcript_id "ERVLE_1p31.1l"; locus "ERVLE_1p31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0127"; repClass "LTR"; repEnd "4710"; repFamily "ERVL"; repLeft "-957"; repStart "4211"; chr1 rmsk exon 79818984 79819267 734 + . gene_id "ERVLE_1p31.1l"; transcript_id "ERVLE_1p31.1l"; locus "ERVLE_1p31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0127"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-601"; repStart "4766"; ### HERVL_1p31.1f ### chr1 rmsk gene 79927925 79934188 . + . gene_id "HERVL_1p31.1f"; transcript_id "HERVL_1p31.1f"; locus "HERVL_1p31.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0033"; model_cov "5386"; model_pct "95.3"; chr1 rmsk exon 79927925 79928384 2942 + . gene_id "HERVL_1p31.1f"; transcript_id "HERVL_1p31.1f"; locus "HERVL_1p31.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0033"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 79928385 79930310 13998 + . gene_id "HERVL_1p31.1f"; transcript_id "HERVL_1p31.1f"; locus "HERVL_1p31.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0033"; repClass "LTR"; repEnd "2018"; repFamily "ERVL"; repLeft "-3636"; repStart "61"; chr1 rmsk exon 79930312 79933739 26731 + . gene_id "HERVL_1p31.1f"; transcript_id "HERVL_1p31.1f"; locus "HERVL_1p31.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0033"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2225"; chr1 rmsk exon 79933740 79934188 3230 + . gene_id "HERVL_1p31.1f"; transcript_id "HERVL_1p31.1f"; locus "HERVL_1p31.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0033"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_1p31.1b ### chr1 rmsk gene 80050218 80054588 . + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0004"; model_cov "2189"; model_pct "36.2"; chr1 rmsk exon 80050218 80050574 2232 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 80050590 80051030 2275 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-5598"; repStart "10"; chr1 rmsk exon 80051030 80051208 728 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "1319"; repFamily "ERVL"; repLeft "-4728"; repStart "1150"; chr1 rmsk exon 80051203 80051394 1220 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1616"; chr1 rmsk exon 80051394 80051662 1283 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr1 rmsk exon 80051662 80052493 5191 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2467"; repStart "2721"; chr1 rmsk exon 80052495 80052588 674 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr1 rmsk exon 80052589 80052603 324 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-824"; repStart "5209"; chr1 rmsk exon 80054033 80054080 324 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "5224"; chr1 rmsk exon 80054081 80054125 250 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "5990"; repFamily "ERVL"; repLeft "-57"; repStart "5946"; chr1 rmsk exon 80054238 80054588 2237 + . gene_id "HERVL18_1p31.1b"; transcript_id "HERVL18_1p31.1b"; locus "HERVL18_1p31.1b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0004"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_1p31.1g ### chr1 rmsk gene 80574449 80576362 . - . gene_id "HERVL_1p31.1g"; transcript_id "HERVL_1p31.1g"; locus "HERVL_1p31.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0035"; model_cov "1604"; model_pct "28.4"; chr1 rmsk exon 80574449 80574680 1508 - . gene_id "HERVL_1p31.1g"; transcript_id "HERVL_1p31.1g"; locus "HERVL_1p31.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0035"; repClass "LTR"; repEnd "237"; repFamily "ERVL"; repLeft "1"; repStart "-216"; chr1 rmsk exon 80574681 80576283 11639 - . gene_id "HERVL_1p31.1g"; transcript_id "HERVL_1p31.1g"; locus "HERVL_1p31.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0035"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4050"; repStart "0"; chr1 rmsk exon 80576284 80576362 572 - . gene_id "HERVL_1p31.1g"; transcript_id "HERVL_1p31.1g"; locus "HERVL_1p31.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0035"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "1"; repStart "-374"; ### MER61_1p31.1b ### chr1 rmsk gene 80633351 80638648 . + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0005"; model_cov "4603"; model_pct "88.2"; chr1 rmsk exon 80633351 80633497 795 + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0005"; repClass "LTR"; repEnd "162"; repFamily "ERV1"; repLeft "-179"; repStart "1"; chr1 rmsk exon 80633760 80633915 887 + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0005"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "192"; chr1 rmsk exon 80633916 80634533 2450 + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0005"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr1 rmsk exon 80634564 80638316 24300 + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0005"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1320"; chr1 rmsk exon 80638317 80638648 1443 + . gene_id "MER61_1p31.1b"; transcript_id "MER61_1p31.1b"; locus "MER61_1p31.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0005"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p31.1m ### chr1 rmsk gene 80659443 80660880 . + . gene_id "ERVLE_1p31.1m"; transcript_id "ERVLE_1p31.1m"; locus "ERVLE_1p31.1m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0128"; model_cov "1361"; model_pct "24.0"; chr1 rmsk exon 80659443 80660686 2209 + . gene_id "ERVLE_1p31.1m"; transcript_id "ERVLE_1p31.1m"; locus "ERVLE_1p31.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0128"; repClass "LTR"; repEnd "5411"; repFamily "ERVL"; repLeft "-256"; repStart "4147"; chr1 rmsk exon 80660781 80660880 258 + . gene_id "ERVLE_1p31.1m"; transcript_id "ERVLE_1p31.1m"; locus "ERVLE_1p31.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0128"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "5555"; ### ERVLE_1p31.1n ### chr1 rmsk gene 80727216 80730853 . - . gene_id "ERVLE_1p31.1n"; transcript_id "ERVLE_1p31.1n"; locus "ERVLE_1p31.1n"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0129"; model_cov "2092"; model_pct "36.9"; chr1 rmsk exon 80727216 80727647 522 - . gene_id "ERVLE_1p31.1n"; transcript_id "ERVLE_1p31.1n"; locus "ERVLE_1p31.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0129"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "4779"; repStart "-384"; chr1 rmsk exon 80728155 80728669 1020 - . gene_id "ERVLE_1p31.1n"; transcript_id "ERVLE_1p31.1n"; locus "ERVLE_1p31.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0129"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "4016"; repStart "-945"; chr1 rmsk exon 80728981 80729173 1020 - . gene_id "ERVLE_1p31.1n"; transcript_id "ERVLE_1p31.1n"; locus "ERVLE_1p31.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0129"; repClass "LTR"; repEnd "4015"; repFamily "ERVL"; repLeft "3815"; repStart "-1652"; chr1 rmsk exon 80730190 80730853 1036 - . gene_id "ERVLE_1p31.1n"; transcript_id "ERVLE_1p31.1n"; locus "ERVLE_1p31.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0129"; repClass "LTR"; repEnd "3154"; repFamily "ERVL"; repLeft "2472"; repStart "-2513"; ### ERVLE_1p31.1o ### chr1 rmsk gene 80741424 80742920 . - . gene_id "ERVLE_1p31.1o"; transcript_id "ERVLE_1p31.1o"; locus "ERVLE_1p31.1o"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0130"; model_cov "1360"; model_pct "24.0"; chr1 rmsk exon 80741424 80741740 787 - . gene_id "ERVLE_1p31.1o"; transcript_id "ERVLE_1p31.1o"; locus "ERVLE_1p31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0130"; repClass "LTR"; repEnd "2425"; repFamily "ERVL"; repLeft "2103"; repStart "-3242"; chr1 rmsk exon 80741795 80742250 433 - . gene_id "ERVLE_1p31.1o"; transcript_id "ERVLE_1p31.1o"; locus "ERVLE_1p31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0130"; repClass "LTR"; repEnd "1940"; repFamily "ERVL"; repLeft "1463"; repStart "-3727"; chr1 rmsk exon 80742374 80742920 715 - . gene_id "ERVLE_1p31.1o"; transcript_id "ERVLE_1p31.1o"; locus "ERVLE_1p31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0130"; repClass "LTR"; repEnd "1281"; repFamily "ERVL"; repLeft "720"; repStart "-4386"; ### HERVH_1p31.1j ### chr1 rmsk gene 81245283 81251207 . + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0041"; model_cov "4903"; model_pct "63.6"; chr1 rmsk exon 81245283 81245733 3394 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 81245736 81248844 16085 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 81248839 81248988 967 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 81248979 81249483 3310 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 81249486 81250157 4192 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr1 rmsk exon 81250162 81250378 1382 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 81250377 81250754 2525 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "-2"; repStart "7322"; chr1 rmsk exon 81250757 81251207 3368 + . gene_id "HERVH_1p31.1j"; transcript_id "HERVH_1p31.1j"; locus "HERVH_1p31.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0041"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_1p31.1c ### chr1 rmsk gene 81277800 81281566 . - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0063"; model_cov "2066"; model_pct "39.5"; chr1 rmsk exon 81277800 81278090 614 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "83"; repStart "-78"; chr1 rmsk exon 81278221 81278368 2094 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "3011"; repFamily "ERVL"; repLeft "2844"; repStart "-2215"; chr1 rmsk exon 81278658 81279537 2094 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "2843"; repFamily "ERVL"; repLeft "1954"; repStart "-2383"; chr1 rmsk exon 81279556 81279907 426 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "1484"; repStart "-3393"; chr1 rmsk exon 81280218 81280573 869 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "893"; repFamily "ERVL"; repLeft "501"; repStart "-4333"; chr1 rmsk exon 81280861 81281120 869 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "231"; repStart "-4726"; chr1 rmsk exon 81281131 81281566 984 - . gene_id "ERV316A3_1p31.1c"; transcript_id "ERV316A3_1p31.1c"; locus "ERV316A3_1p31.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0063"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1p31.1d ### chr1 rmsk gene 81587983 81592738 . - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0064"; model_cov "3218"; model_pct "61.6"; chr1 rmsk exon 81587983 81588312 773 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "58"; repStart "-3"; chr1 rmsk exon 81588344 81589170 1637 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "4750"; repFamily "ERVL"; repLeft "3942"; repStart "-476"; chr1 rmsk exon 81589179 81589252 463 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "4061"; repFamily "ERVL"; repLeft "3988"; repStart "-1165"; chr1 rmsk exon 81589244 81591530 2770 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "2587"; repFamily "ERVL"; repLeft "300"; repStart "-2639"; chr1 rmsk exon 81592063 81592115 2770 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "299"; repFamily "ERVL"; repLeft "249"; repStart "-4927"; chr1 rmsk exon 81592563 81592738 646 - . gene_id "ERV316A3_1p31.1d"; transcript_id "ERV316A3_1p31.1d"; locus "ERV316A3_1p31.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0064"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "262"; repStart "-3"; ### HERVH_1p31.1k ### chr1 rmsk gene 82067563 82072836 . - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0042"; model_cov "4919"; model_pct "63.8"; chr1 rmsk exon 82067563 82067954 2283 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-40"; chr1 rmsk exon 82067955 82068333 2525 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 82068332 82068553 1334 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 82068551 82069213 4314 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 82069216 82069714 3275 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 82069705 82069853 954 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 82069834 82072729 19482 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 82072730 82072836 930 - . gene_id "HERVH_1p31.1k"; transcript_id "HERVH_1p31.1k"; locus "HERVH_1p31.1k"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0042"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "344"; repStart "0"; ### HERVH_1p31.1l ### chr1 rmsk gene 82354569 82360556 . - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0043"; model_cov "5268"; model_pct "68.3"; chr1 rmsk exon 82354569 82354965 2112 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; chr1 rmsk exon 82354966 82355358 2582 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 82355359 82355582 1429 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5590"; repStart "-1894"; chr1 rmsk exon 82355574 82356492 6182 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4221"; repStart "-2564"; chr1 rmsk exon 82356485 82356818 1872 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "5018"; repFamily "ERV1"; repLeft "4684"; repStart "-2695"; chr1 rmsk exon 82356809 82357053 1443 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3492"; repStart "-3977"; chr1 rmsk exon 82357044 82357183 805 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 82357163 82360158 16340 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 82360161 82360556 2642 - . gene_id "HERVH_1p31.1l"; transcript_id "HERVH_1p31.1l"; locus "HERVH_1p31.1l"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0043"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_1p31.1p ### chr1 rmsk gene 82365040 82367912 . - . gene_id "ERVLE_1p31.1p"; transcript_id "ERVLE_1p31.1p"; locus "ERVLE_1p31.1p"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0132"; model_cov "1753"; model_pct "30.9"; chr1 rmsk exon 82365040 82365158 266 - . gene_id "ERVLE_1p31.1p"; transcript_id "ERVLE_1p31.1p"; locus "ERVLE_1p31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0132"; repClass "LTR"; repEnd "5378"; repFamily "ERVL"; repLeft "5259"; repStart "-289"; chr1 rmsk exon 82366180 82366483 1137 - . gene_id "ERVLE_1p31.1p"; transcript_id "ERVLE_1p31.1p"; locus "ERVLE_1p31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0132"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "4907"; repStart "-437"; chr1 rmsk exon 82366517 82367687 4709 - . gene_id "ERVLE_1p31.1p"; transcript_id "ERVLE_1p31.1p"; locus "ERVLE_1p31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0132"; repClass "LTR"; repEnd "4852"; repFamily "ERVL"; repLeft "3661"; repStart "-815"; chr1 rmsk exon 82367799 82367912 501 - . gene_id "ERVLE_1p31.1p"; transcript_id "ERVLE_1p31.1p"; locus "ERVLE_1p31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0132"; repClass "LTR"; repEnd "3285"; repFamily "ERVL"; repLeft "3165"; repStart "-2382"; ### ERVLB4_1p31.1f ### chr1 rmsk gene 82452322 82454754 . + . gene_id "ERVLB4_1p31.1f"; transcript_id "ERVLB4_1p31.1f"; locus "ERVLB4_1p31.1f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0037"; model_cov "2167"; model_pct "37.9"; chr1 rmsk exon 82452322 82454446 11987 + . gene_id "ERVLB4_1p31.1f"; transcript_id "ERVLB4_1p31.1f"; locus "ERVLB4_1p31.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0037"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3547"; chr1 rmsk exon 82454447 82454514 379 + . gene_id "ERVLB4_1p31.1f"; transcript_id "ERVLB4_1p31.1f"; locus "ERVLB4_1p31.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0037"; repClass "LTR"; repEnd "70"; repFamily "ERVL"; repLeft "-486"; repStart "1"; chr1 rmsk exon 82454517 82454754 1049 + . gene_id "ERVLB4_1p31.1f"; transcript_id "ERVLB4_1p31.1f"; locus "ERVLB4_1p31.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0037"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "-6"; repStart "275"; ### ERV316A3_1p31.1e ### chr1 rmsk gene 82550256 82553802 . - . gene_id "ERV316A3_1p31.1e"; transcript_id "ERV316A3_1p31.1e"; locus "ERV316A3_1p31.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0065"; model_cov "2421"; model_pct "46.3"; chr1 rmsk exon 82550256 82550517 568 - . gene_id "ERV316A3_1p31.1e"; transcript_id "ERV316A3_1p31.1e"; locus "ERV316A3_1p31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0065"; repClass "LTR"; repEnd "3131"; repFamily "ERVL"; repLeft "2719"; repStart "-2095"; chr1 rmsk exon 82551426 82552865 3269 - . gene_id "ERV316A3_1p31.1e"; transcript_id "ERV316A3_1p31.1e"; locus "ERV316A3_1p31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0065"; repClass "LTR"; repEnd "2371"; repFamily "ERVL"; repLeft "945"; repStart "-2855"; chr1 rmsk exon 82553170 82553709 3269 - . gene_id "ERV316A3_1p31.1e"; transcript_id "ERV316A3_1p31.1e"; locus "ERV316A3_1p31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0065"; repClass "LTR"; repEnd "944"; repFamily "ERVL"; repLeft "361"; repStart "-4282"; chr1 rmsk exon 82553714 82553802 296 - . gene_id "ERV316A3_1p31.1e"; transcript_id "ERV316A3_1p31.1e"; locus "ERV316A3_1p31.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0065"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "42"; repStart "-312"; ### LTR19_1p31.1 ### chr1 rmsk gene 82622974 82626992 . + . gene_id "LTR19_1p31.1"; transcript_id "LTR19_1p31.1"; locus "LTR19_1p31.1"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0002"; model_cov "6506"; model_pct "100.0"; chr1 rmsk exon 82622974 82623742 2405 + . gene_id "LTR19_1p31.1"; transcript_id "LTR19_1p31.1"; locus "LTR19_1p31.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0002"; repClass "LTR"; repEnd "-479"; repFamily "ERV1"; repLeft "-6065"; repStart "-1950"; chr1 rmsk exon 82623719 82626992 9195 + . gene_id "LTR19_1p31.1"; transcript_id "LTR19_1p31.1"; locus "LTR19_1p31.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0002"; repClass "LTR"; repEnd "5584"; repFamily "ERV1"; repLeft "-2"; repStart "549"; ### ERV316A3_1p31.1f ### chr1 rmsk gene 82937479 82941026 . - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0067"; model_cov "2365"; model_pct "45.3"; chr1 rmsk exon 82937479 82937921 1358 - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0067"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chr1 rmsk exon 82937989 82938707 1895 - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0067"; repClass "LTR"; repEnd "5160"; repFamily "ERVL"; repLeft "4325"; repStart "-66"; chr1 rmsk exon 82938770 82939354 2111 - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0067"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "1100"; repStart "-3459"; chr1 rmsk exon 82939770 82940589 2111 - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0067"; repClass "LTR"; repEnd "869"; repFamily "ERVL"; repLeft "6"; repStart "-4357"; chr1 rmsk exon 82940595 82941026 1741 - . gene_id "ERV316A3_1p31.1f"; transcript_id "ERV316A3_1p31.1f"; locus "ERV316A3_1p31.1f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0067"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "1"; repStart "-11"; ### HERVH_1p31.1m ### chr1 rmsk gene 82955311 82961594 . + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0044"; model_cov "5768"; model_pct "74.8"; chr1 rmsk exon 82955311 82955724 2658 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 82955730 82958888 19825 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "6"; chr1 rmsk exon 82958880 82960586 8159 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4552"; chr1 rmsk exon 82960588 82960806 1357 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr1 rmsk exon 82960805 82961184 2262 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 82961185 82961594 2527 + . gene_id "HERVH_1p31.1m"; transcript_id "HERVH_1p31.1m"; locus "HERVH_1p31.1m"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0044"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL40_1p31.1c ### chr1 rmsk gene 83086361 83089383 . + . gene_id "HERVL40_1p31.1c"; transcript_id "HERVL40_1p31.1c"; locus "HERVL40_1p31.1c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0009"; model_cov "2363"; model_pct "42.7"; chr1 rmsk exon 83086361 83086499 842 + . gene_id "HERVL40_1p31.1c"; transcript_id "HERVL40_1p31.1c"; locus "HERVL40_1p31.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0009"; repClass "LTR"; repEnd "150"; repFamily "ERVL"; repLeft "-369"; repStart "4"; chr1 rmsk exon 83086671 83086929 853 + . gene_id "HERVL40_1p31.1c"; transcript_id "HERVL40_1p31.1c"; locus "HERVL40_1p31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0009"; repClass "LTR"; repEnd "2546"; repFamily "ERVL"; repLeft "-2984"; repStart "2280"; chr1 rmsk exon 83087038 83088949 4007 + . gene_id "HERVL40_1p31.1c"; transcript_id "HERVL40_1p31.1c"; locus "HERVL40_1p31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0009"; repClass "LTR"; repEnd "4587"; repFamily "ERVL"; repLeft "-943"; repStart "2552"; chr1 rmsk exon 83089316 83089383 2256 + . gene_id "HERVL40_1p31.1c"; transcript_id "HERVL40_1p31.1c"; locus "HERVL40_1p31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0009"; repClass "LTR"; repEnd "4650"; repFamily "ERVL"; repLeft "-880"; repStart "4588"; ### ERVLE_1p31.1q ### chr1 rmsk gene 83420348 83421067 . - . gene_id "ERVLE_1p31.1q"; transcript_id "ERVLE_1p31.1q"; locus "ERVLE_1p31.1q"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0134"; model_cov "728"; model_pct "12.8"; chr1 rmsk exon 83420348 83421067 980 - . gene_id "ERVLE_1p31.1q"; transcript_id "ERVLE_1p31.1q"; locus "ERVLE_1p31.1q"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0134"; repClass "LTR"; repEnd "5245"; repFamily "ERVL"; repLeft "4517"; repStart "-422"; ### MER4_1p31.1 ### chr1 rmsk gene 84020889 84023436 . - . gene_id "MER4_1p31.1"; transcript_id "MER4_1p31.1"; locus "MER4_1p31.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0027"; model_cov "1741"; model_pct "26.4"; chr1 rmsk exon 84020889 84021323 2754 - . gene_id "MER4_1p31.1"; transcript_id "MER4_1p31.1"; locus "MER4_1p31.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0027"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 84021332 84021854 7148 - . gene_id "MER4_1p31.1"; transcript_id "MER4_1p31.1"; locus "MER4_1p31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0027"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6058"; repStart "-2"; chr1 rmsk exon 84022210 84023436 7148 - . gene_id "MER4_1p31.1"; transcript_id "MER4_1p31.1"; locus "MER4_1p31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0027"; repClass "LTR"; repEnd "6057"; repFamily "ERV1"; repLeft "4854"; repStart "-541"; ### ERVLB4_1p31.1g ### chr1 rmsk gene 84027914 84034931 . + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0038"; model_cov "3553"; model_pct "62.2"; chr1 rmsk exon 84027914 84028207 1707 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "-3255"; repStart "2163"; chr1 rmsk exon 84028761 84029299 8146 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "-2721"; repStart "2458"; chr1 rmsk exon 84029734 84030680 8146 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "3970"; repFamily "ERVL"; repLeft "-1744"; repStart "2994"; chr1 rmsk exon 84032758 84034432 9218 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "3966"; chr1 rmsk exon 84034434 84034835 1804 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr1 rmsk exon 84034894 84034931 1804 + . gene_id "ERVLB4_1p31.1g"; transcript_id "ERVLB4_1p31.1g"; locus "ERVLB4_1p31.1g"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0038"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "481"; ### ERVLE_1p31.1r ### chr1 rmsk gene 84038942 84043331 . + . gene_id "ERVLE_1p31.1r"; transcript_id "ERVLE_1p31.1r"; locus "ERVLE_1p31.1r"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0135"; model_cov "2933"; model_pct "51.8"; chr1 rmsk exon 84038942 84040984 7702 + . gene_id "ERVLE_1p31.1r"; transcript_id "ERVLE_1p31.1r"; locus "ERVLE_1p31.1r"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0135"; repClass "LTR"; repEnd "4730"; repFamily "ERVL"; repLeft "-937"; repStart "2593"; chr1 rmsk exon 84041429 84041761 1332 + . gene_id "ERVLE_1p31.1r"; transcript_id "ERVLE_1p31.1r"; locus "ERVLE_1p31.1r"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0135"; repClass "LTR"; repEnd "5065"; repFamily "ERVL"; repLeft "-602"; repStart "4730"; chr1 rmsk exon 84042272 84042702 1563 + . gene_id "ERVLE_1p31.1r"; transcript_id "ERVLE_1p31.1r"; locus "ERVLE_1p31.1r"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0135"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-3"; repStart "5203"; chr1 rmsk exon 84042707 84043331 1173 + . gene_id "ERVLE_1p31.1r"; transcript_id "ERVLE_1p31.1r"; locus "ERVLE_1p31.1r"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0135"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLE_1p31.1s ### chr1 rmsk gene 84050542 84052088 . + . gene_id "ERVLE_1p31.1s"; transcript_id "ERVLE_1p31.1s"; locus "ERVLE_1p31.1s"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0137"; model_cov "1180"; model_pct "20.8"; chr1 rmsk exon 84050542 84050786 439 + . gene_id "ERVLE_1p31.1s"; transcript_id "ERVLE_1p31.1s"; locus "ERVLE_1p31.1s"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0137"; repClass "LTR"; repEnd "1603"; repFamily "ERVL"; repLeft "-4064"; repStart "1350"; chr1 rmsk exon 84050841 84051691 1707 + . gene_id "ERVLE_1p31.1s"; transcript_id "ERVLE_1p31.1s"; locus "ERVLE_1p31.1s"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0137"; repClass "LTR"; repEnd "2560"; repFamily "ERVL"; repLeft "-3107"; repStart "1688"; chr1 rmsk exon 84052036 84052088 1707 + . gene_id "ERVLE_1p31.1s"; transcript_id "ERVLE_1p31.1s"; locus "ERVLE_1p31.1s"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0137"; repClass "LTR"; repEnd "2616"; repFamily "ERVL"; repLeft "-3051"; repStart "2561"; ### MER4B_1p31.1b ### chr1 rmsk gene 84069404 84072036 . - . gene_id "MER4B_1p31.1b"; transcript_id "MER4B_1p31.1b"; locus "MER4B_1p31.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0011"; model_cov "2395"; model_pct "35.4"; chr1 rmsk exon 84069404 84070761 4721 - . gene_id "MER4B_1p31.1b"; transcript_id "MER4B_1p31.1b"; locus "MER4B_1p31.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0011"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "1426"; repStart "-4085"; chr1 rmsk exon 84070835 84071923 6265 - . gene_id "MER4B_1p31.1b"; transcript_id "MER4B_1p31.1b"; locus "MER4B_1p31.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0011"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "1"; repStart "-5609"; chr1 rmsk exon 84071924 84072036 788 - . gene_id "MER4B_1p31.1b"; transcript_id "MER4B_1p31.1b"; locus "MER4B_1p31.1b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0011"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "652"; repStart "0"; ### MER101_1p31.1f ### chr1 rmsk gene 84186630 84190130 . - . gene_id "MER101_1p31.1f"; transcript_id "MER101_1p31.1f"; locus "MER101_1p31.1f"; category "internal"; intModel "MER101-int"; locid "MER101-int_0020"; model_cov "3093"; model_pct "46.6"; chr1 rmsk exon 84186630 84187121 861 - . gene_id "MER101_1p31.1f"; transcript_id "MER101_1p31.1f"; locus "MER101_1p31.1f"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0020"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6137"; repStart "0"; chr1 rmsk exon 84187208 84189558 4534 - . gene_id "MER101_1p31.1f"; transcript_id "MER101_1p31.1f"; locus "MER101_1p31.1f"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0020"; repClass "LTR"; repEnd "5582"; repFamily "ERV1"; repLeft "3448"; repStart "-1057"; chr1 rmsk exon 84189669 84190130 1412 - . gene_id "MER101_1p31.1f"; transcript_id "MER101_1p31.1f"; locus "MER101_1p31.1f"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0020"; repClass "LTR"; repEnd "2760"; repFamily "ERV1"; repLeft "2303"; repStart "-3879"; ### ERV316A3_1p31.1g ### chr1 rmsk gene 84357153 84361136 . - . gene_id "ERV316A3_1p31.1g"; transcript_id "ERV316A3_1p31.1g"; locus "ERV316A3_1p31.1g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0069"; model_cov "2835"; model_pct "54.2"; chr1 rmsk exon 84357153 84358649 3188 - . gene_id "ERV316A3_1p31.1g"; transcript_id "ERV316A3_1p31.1g"; locus "ERV316A3_1p31.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0069"; repClass "LTR"; repEnd "4659"; repFamily "ERVL"; repLeft "3030"; repStart "-567"; chr1 rmsk exon 84359529 84359839 1144 - . gene_id "ERV316A3_1p31.1g"; transcript_id "ERV316A3_1p31.1g"; locus "ERV316A3_1p31.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0069"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "2711"; repStart "-2203"; chr1 rmsk exon 84360341 84361136 975 - . gene_id "ERV316A3_1p31.1g"; transcript_id "ERV316A3_1p31.1g"; locus "ERV316A3_1p31.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0069"; repClass "LTR"; repEnd "897"; repFamily "ERVL"; repLeft "3"; repStart "-4329"; ### ERVLE_1p22.3a ### chr1 rmsk gene 84536109 84539258 . + . gene_id "ERVLE_1p22.3a"; transcript_id "ERVLE_1p22.3a"; locus "ERVLE_1p22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0138"; model_cov "2351"; model_pct "41.5"; chr1 rmsk exon 84536109 84536448 4411 + . gene_id "ERVLE_1p22.3a"; transcript_id "ERVLE_1p22.3a"; locus "ERVLE_1p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0138"; repClass "LTR"; repEnd "1212"; repFamily "ERVL"; repLeft "-4455"; repStart "864"; chr1 rmsk exon 84536744 84536867 4411 + . gene_id "ERVLE_1p22.3a"; transcript_id "ERVLE_1p22.3a"; locus "ERVLE_1p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0138"; repClass "LTR"; repEnd "1377"; repFamily "ERVL"; repLeft "-4290"; repStart "1213"; chr1 rmsk exon 84537178 84538808 4411 + . gene_id "ERVLE_1p22.3a"; transcript_id "ERVLE_1p22.3a"; locus "ERVLE_1p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0138"; repClass "LTR"; repEnd "3071"; repFamily "ERVL"; repLeft "-2596"; repStart "1378"; chr1 rmsk exon 84539100 84539258 4411 + . gene_id "ERVLE_1p22.3a"; transcript_id "ERVLE_1p22.3a"; locus "ERVLE_1p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0138"; repClass "LTR"; repEnd "3218"; repFamily "ERVL"; repLeft "-2449"; repStart "3072"; ### LTR25_1p22.3 ### chr1 rmsk gene 84603880 84611675 . + . gene_id "LTR25_1p22.3"; transcript_id "LTR25_1p22.3"; locus "LTR25_1p22.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0001"; model_cov "7154"; model_pct "99.5"; chr1 rmsk exon 84603880 84604711 12470 + . gene_id "LTR25_1p22.3"; transcript_id "LTR25_1p22.3"; locus "LTR25_1p22.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0001"; repClass "LTR"; repEnd "879"; repFamily "ERV1"; repLeft "-6309"; repStart "30"; chr1 rmsk exon 84604753 84606832 12470 + . gene_id "LTR25_1p22.3"; transcript_id "LTR25_1p22.3"; locus "LTR25_1p22.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0001"; repClass "LTR"; repEnd "3007"; repFamily "ERV1"; repLeft "-4181"; repStart "880"; chr1 rmsk exon 84607284 84610701 22012 + . gene_id "LTR25_1p22.3"; transcript_id "LTR25_1p22.3"; locus "LTR25_1p22.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0001"; repClass "LTR"; repEnd "6573"; repFamily "ERV1"; repLeft "-615"; repStart "3008"; chr1 rmsk exon 84611051 84611675 22012 + . gene_id "LTR25_1p22.3"; transcript_id "LTR25_1p22.3"; locus "LTR25_1p22.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0001"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6574"; ### ERVLE_1p22.3b ### chr1 rmsk gene 85218859 85219853 . + . gene_id "ERVLE_1p22.3b"; transcript_id "ERVLE_1p22.3b"; locus "ERVLE_1p22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0139"; model_cov "720"; model_pct "12.7"; chr1 rmsk exon 85218859 85219165 876 + . gene_id "ERVLE_1p22.3b"; transcript_id "ERVLE_1p22.3b"; locus "ERVLE_1p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0139"; repClass "LTR"; repEnd "4429"; repFamily "ERVL"; repLeft "-1238"; repStart "4101"; chr1 rmsk exon 85219439 85219853 1290 + . gene_id "ERVLE_1p22.3b"; transcript_id "ERVLE_1p22.3b"; locus "ERVLE_1p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0139"; repClass "LTR"; repEnd "4920"; repFamily "ERVL"; repLeft "-747"; repStart "4528"; ### MER34B_1p22.3a ### chr1 rmsk gene 85394502 85396752 . + . gene_id "MER34B_1p22.3a"; transcript_id "MER34B_1p22.3a"; locus "MER34B_1p22.3a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0012"; model_cov "1738"; model_pct "32.4"; chr1 rmsk exon 85394502 85395394 1769 + . gene_id "MER34B_1p22.3a"; transcript_id "MER34B_1p22.3a"; locus "MER34B_1p22.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0012"; repClass "LTR"; repEnd "1095"; repFamily "ERV1"; repLeft "-4261"; repStart "-85"; chr1 rmsk exon 85395702 85396205 2447 + . gene_id "MER34B_1p22.3a"; transcript_id "MER34B_1p22.3a"; locus "MER34B_1p22.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0012"; repClass "LTR"; repEnd "3133"; repFamily "ERV1"; repLeft "-2223"; repStart "2776"; chr1 rmsk exon 85396609 85396752 2447 + . gene_id "MER34B_1p22.3a"; transcript_id "MER34B_1p22.3a"; locus "MER34B_1p22.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0012"; repClass "LTR"; repEnd "3335"; repFamily "ERV1"; repLeft "-2021"; repStart "3134"; ### MER34B_1p22.3b ### chr1 rmsk gene 85397052 85397765 . + . gene_id "MER34B_1p22.3b"; transcript_id "MER34B_1p22.3b"; locus "MER34B_1p22.3b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0013"; model_cov "987"; model_pct "18.4"; chr1 rmsk exon 85397052 85397765 2447 + . gene_id "MER34B_1p22.3b"; transcript_id "MER34B_1p22.3b"; locus "MER34B_1p22.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0013"; repClass "LTR"; repEnd "3040"; repFamily "ERV1"; repLeft "-2316"; repStart "2053"; ### ERVLE_1p22.3c ### chr1 rmsk gene 85806974 85813032 . + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0140"; model_cov "3401"; model_pct "60.0"; chr1 rmsk exon 85806974 85807117 354 + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0140"; repClass "LTR"; repEnd "656"; repFamily "ERVL"; repLeft "-5011"; repStart "512"; chr1 rmsk exon 85807115 85808723 2811 + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0140"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2877"; repStart "1032"; chr1 rmsk exon 85809521 85809729 2811 + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0140"; repClass "LTR"; repEnd "2996"; repFamily "ERVL"; repLeft "-2671"; repStart "2791"; chr1 rmsk exon 85811788 85812942 1602 + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0140"; repClass "LTR"; repEnd "4212"; repFamily "ERVL"; repLeft "-1455"; repStart "2983"; chr1 rmsk exon 85812968 85813032 264 + . gene_id "ERVLE_1p22.3c"; transcript_id "ERVLE_1p22.3c"; locus "ERVLE_1p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0140"; repClass "LTR"; repEnd "4344"; repFamily "ERVL"; repLeft "-1323"; repStart "4279"; ### ERVLB4_1p22.3a ### chr1 rmsk gene 85913180 85915546 . + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0039"; model_cov "1204"; model_pct "21.1"; chr1 rmsk exon 85913180 85913861 4601 + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0039"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "-507"; repStart "4512"; chr1 rmsk exon 85914137 85914304 2865 + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0039"; repClass "LTR"; repEnd "5371"; repFamily "ERVL"; repLeft "-343"; repStart "5202"; chr1 rmsk exon 85914345 85914378 2865 + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0039"; repClass "LTR"; repEnd "5428"; repFamily "ERVL"; repLeft "-286"; repStart "5372"; chr1 rmsk exon 85914691 85914976 2865 + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0039"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5429"; chr1 rmsk exon 85914977 85915546 2091 + . gene_id "ERVLB4_1p22.3a"; transcript_id "ERVLB4_1p22.3a"; locus "ERVLB4_1p22.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0039"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### ERV316A3_1p22.3a ### chr1 rmsk gene 85935919 85939056 . + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0070"; model_cov "2410"; model_pct "46.1"; chr1 rmsk exon 85935919 85936033 290 + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0070"; repClass "LTR"; repEnd "253"; repFamily "ERVL"; repLeft "-198"; repStart "150"; chr1 rmsk exon 85936307 85936643 1171 + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0070"; repClass "LTR"; repEnd "1033"; repFamily "ERVL"; repLeft "-4193"; repStart "682"; chr1 rmsk exon 85936641 85938483 5408 + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0070"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "-440"; repStart "2913"; chr1 rmsk exon 85938476 85938655 632 + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0070"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5040"; chr1 rmsk exon 85938656 85939056 803 + . gene_id "ERV316A3_1p22.3a"; transcript_id "ERV316A3_1p22.3a"; locus "ERV316A3_1p22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0070"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERV316A3_1p22.3b ### chr1 rmsk gene 86002209 86005168 . + . gene_id "ERV316A3_1p22.3b"; transcript_id "ERV316A3_1p22.3b"; locus "ERV316A3_1p22.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0071"; model_cov "2980"; model_pct "57.0"; chr1 rmsk exon 86002209 86005168 9735 + . gene_id "ERV316A3_1p22.3b"; transcript_id "ERV316A3_1p22.3b"; locus "ERV316A3_1p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0071"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "-111"; repStart "2135"; ### ERVLB4_1p22.3b ### chr1 rmsk gene 86280523 86283198 . + . gene_id "ERVLB4_1p22.3b"; transcript_id "ERVLB4_1p22.3b"; locus "ERVLB4_1p22.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0040"; model_cov "2173"; model_pct "38.0"; chr1 rmsk exon 86280523 86282644 12493 + . gene_id "ERVLB4_1p22.3b"; transcript_id "ERVLB4_1p22.3b"; locus "ERVLB4_1p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0040"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3541"; chr1 rmsk exon 86282645 86283198 2282 + . gene_id "ERVLB4_1p22.3b"; transcript_id "ERVLB4_1p22.3b"; locus "ERVLB4_1p22.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0040"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### HERVH48_1p22.3 ### chr1 rmsk gene 86339370 86343589 . + . gene_id "HERVH48_1p22.3"; transcript_id "HERVH48_1p22.3"; locus "HERVH48_1p22.3"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0001"; model_cov "3926"; model_pct "59.0"; chr1 rmsk exon 86339370 86339774 2710 + . gene_id "HERVH48_1p22.3"; transcript_id "HERVH48_1p22.3"; locus "HERVH48_1p22.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0001"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 86339775 86343589 25050 + . gene_id "HERVH48_1p22.3"; transcript_id "HERVH48_1p22.3"; locus "HERVH48_1p22.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0001"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2727"; repStart "1"; ### ERVLE_1p22.3d ### chr1 rmsk gene 86397810 86400070 . - . gene_id "ERVLE_1p22.3d"; transcript_id "ERVLE_1p22.3d"; locus "ERVLE_1p22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0142"; model_cov "1563"; model_pct "27.6"; chr1 rmsk exon 86397810 86398029 868 - . gene_id "ERVLE_1p22.3d"; transcript_id "ERVLE_1p22.3d"; locus "ERVLE_1p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0142"; repClass "LTR"; repEnd "2322"; repFamily "ERVL"; repLeft "2094"; repStart "-3345"; chr1 rmsk exon 86398064 86398508 837 - . gene_id "ERVLE_1p22.3d"; transcript_id "ERVLE_1p22.3d"; locus "ERVLE_1p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0142"; repClass "LTR"; repEnd "1707"; repFamily "ERVL"; repLeft "1183"; repStart "-3960"; chr1 rmsk exon 86398802 86399145 837 - . gene_id "ERVLE_1p22.3d"; transcript_id "ERVLE_1p22.3d"; locus "ERVLE_1p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0142"; repClass "LTR"; repEnd "1169"; repFamily "ERVL"; repLeft "779"; repStart "-4498"; chr1 rmsk exon 86399665 86400070 635 - . gene_id "ERVLE_1p22.3d"; transcript_id "ERVLE_1p22.3d"; locus "ERVLE_1p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0142"; repClass "LTR"; repEnd "785"; repFamily "ERVL"; repLeft "364"; repStart "-4882"; ### HERVL18_1p22.3 ### chr1 rmsk gene 86409350 86416680 . - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0005"; model_cov "6042"; model_pct "99.9"; chr1 rmsk exon 86409350 86409662 2105 - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0005"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 86409664 86414606 15089 - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0005"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "971"; repStart "0"; chr1 rmsk exon 86415040 86415599 5009 - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0005"; repClass "LTR"; repEnd "976"; repFamily "ERVL"; repLeft "438"; repStart "-5071"; chr1 rmsk exon 86415892 86416327 5009 - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0005"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "9"; repStart "-5610"; chr1 rmsk exon 86416342 86416680 2373 - . gene_id "HERVL18_1p22.3"; transcript_id "HERVL18_1p22.3"; locus "HERVL18_1p22.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0005"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_1p22.3 ### chr1 rmsk gene 86511893 86514952 . + . gene_id "HERVL_1p22.3"; transcript_id "HERVL_1p22.3"; locus "HERVL_1p22.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0036"; model_cov "2631"; model_pct "46.5"; chr1 rmsk exon 86511893 86514519 19619 + . gene_id "HERVL_1p22.3"; transcript_id "HERVL_1p22.3"; locus "HERVL_1p22.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0036"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-8"; repStart "3015"; chr1 rmsk exon 86514520 86514952 3375 + . gene_id "HERVL_1p22.3"; transcript_id "HERVL_1p22.3"; locus "HERVL_1p22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0036"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### HUERSP3B_1p22.3 ### chr1 rmsk gene 86692599 86694874 . - . gene_id "HUERSP3B_1p22.3"; transcript_id "HUERSP3B_1p22.3"; locus "HUERSP3B_1p22.3"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0006"; model_cov "1840"; model_pct "24.8"; chr1 rmsk exon 86692599 86693087 3429 - . gene_id "HUERSP3B_1p22.3"; transcript_id "HUERSP3B_1p22.3"; locus "HUERSP3B_1p22.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0006"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "1"; repStart "-145"; chr1 rmsk exon 86693091 86694874 12698 - . gene_id "HUERSP3B_1p22.3"; transcript_id "HUERSP3B_1p22.3"; locus "HUERSP3B_1p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0006"; repClass "LTR"; repEnd "7412"; repFamily "ERV1"; repLeft "5572"; repStart "-6"; ### ERV316A3_1p22.3c ### chr1 rmsk gene 87160672 87162483 . + . gene_id "ERV316A3_1p22.3c"; transcript_id "ERV316A3_1p22.3c"; locus "ERV316A3_1p22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0072"; model_cov "1904"; model_pct "36.4"; chr1 rmsk exon 87160672 87162483 5743 + . gene_id "ERV316A3_1p22.3c"; transcript_id "ERV316A3_1p22.3c"; locus "ERV316A3_1p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0072"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "-141"; repStart "3181"; ### ERVLB4_1p22.3c ### chr1 rmsk gene 87800644 87803070 . - . gene_id "ERVLB4_1p22.3c"; transcript_id "ERVLB4_1p22.3c"; locus "ERVLB4_1p22.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0041"; model_cov "2111"; model_pct "36.9"; chr1 rmsk exon 87800644 87800951 774 - . gene_id "ERVLB4_1p22.3c"; transcript_id "ERVLB4_1p22.3c"; locus "ERVLB4_1p22.3c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0041"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "61"; repStart "0"; chr1 rmsk exon 87800980 87803070 10502 - . gene_id "ERVLB4_1p22.3c"; transcript_id "ERVLB4_1p22.3c"; locus "ERVLB4_1p22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0041"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "3602"; repStart "-1"; ### ERVLB4_1p22.2a ### chr1 rmsk gene 88378752 88379662 . - . gene_id "ERVLB4_1p22.2a"; transcript_id "ERVLB4_1p22.2a"; locus "ERVLB4_1p22.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0042"; model_cov "910"; model_pct "15.9"; chr1 rmsk exon 88378752 88379662 5217 - . gene_id "ERVLB4_1p22.2a"; transcript_id "ERVLB4_1p22.2a"; locus "ERVLB4_1p22.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0042"; repClass "LTR"; repEnd "2162"; repFamily "ERVL"; repLeft "1252"; repStart "-3552"; ### ERV316A3_1p22.2a ### chr1 rmsk gene 88575197 88577840 . + . gene_id "ERV316A3_1p22.2a"; transcript_id "ERV316A3_1p22.2a"; locus "ERV316A3_1p22.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0073"; model_cov "2226"; model_pct "42.6"; chr1 rmsk exon 88575197 88575333 333 + . gene_id "ERV316A3_1p22.2a"; transcript_id "ERV316A3_1p22.2a"; locus "ERV316A3_1p22.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0073"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "-168"; repStart "145"; chr1 rmsk exon 88575390 88575814 935 + . gene_id "ERV316A3_1p22.2a"; transcript_id "ERV316A3_1p22.2a"; locus "ERV316A3_1p22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0073"; repClass "LTR"; repEnd "702"; repFamily "ERVL"; repLeft "-4524"; repStart "250"; chr1 rmsk exon 88575994 88577200 2998 + . gene_id "ERV316A3_1p22.2a"; transcript_id "ERV316A3_1p22.2a"; locus "ERV316A3_1p22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0073"; repClass "LTR"; repEnd "1879"; repFamily "ERVL"; repLeft "-3347"; repStart "663"; chr1 rmsk exon 88577335 88577840 1313 + . gene_id "ERV316A3_1p22.2a"; transcript_id "ERV316A3_1p22.2a"; locus "ERV316A3_1p22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0073"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "-2194"; repStart "2474"; ### ERV316A3_1p22.2b ### chr1 rmsk gene 88578270 88580028 . + . gene_id "ERV316A3_1p22.2b"; transcript_id "ERV316A3_1p22.2b"; locus "ERV316A3_1p22.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0074"; model_cov "704"; model_pct "13.5"; chr1 rmsk exon 88578270 88578712 1564 + . gene_id "ERV316A3_1p22.2b"; transcript_id "ERV316A3_1p22.2b"; locus "ERV316A3_1p22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0074"; repClass "LTR"; repEnd "2733"; repFamily "ERVL"; repLeft "-2493"; repStart "2190"; chr1 rmsk exon 88579290 88579457 1300 + . gene_id "ERV316A3_1p22.2b"; transcript_id "ERV316A3_1p22.2b"; locus "ERV316A3_1p22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0074"; repClass "LTR"; repEnd "2895"; repFamily "ERVL"; repLeft "-2331"; repStart "2734"; chr1 rmsk exon 88579607 88580028 1353 + . gene_id "ERV316A3_1p22.2b"; transcript_id "ERV316A3_1p22.2b"; locus "ERV316A3_1p22.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0074"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### HERVL_1p22.2a ### chr1 rmsk gene 88595833 88602999 . + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0037"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 88595833 88596225 2790 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-55"; repStart "2"; chr1 rmsk exon 88596377 88596429 363 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "401"; chr1 rmsk exon 88596430 88597616 41811 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "-4473"; repStart "1"; chr1 rmsk exon 88597910 88602327 41811 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1182"; chr1 rmsk exon 88602328 88602753 2720 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-101"; chr1 rmsk exon 88602905 88602922 238 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-31"; repStart "398"; chr1 rmsk exon 88602969 88602999 238 + . gene_id "HERVL_1p22.2a"; transcript_id "HERVL_1p22.2a"; locus "HERVL_1p22.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0037"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "423"; ### ERVLB4_1p22.2b ### chr1 rmsk gene 88636269 88638131 . - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0043"; model_cov "748"; model_pct "13.1"; chr1 rmsk exon 88636269 88636671 1602 - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0043"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "57"; repStart "-28"; chr1 rmsk exon 88637028 88637085 1602 - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0043"; repClass "LTR"; repEnd "56"; repFamily "ERVL"; repLeft "1"; repStart "-464"; chr1 rmsk exon 88637086 88637504 1726 - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0043"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5298"; repStart "0"; chr1 rmsk exon 88637807 88637892 1726 - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0043"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "5205"; repStart "-417"; chr1 rmsk exon 88637896 88638131 1415 - . gene_id "ERVLB4_1p22.2b"; transcript_id "ERVLB4_1p22.2b"; locus "ERVLB4_1p22.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0043"; repClass "LTR"; repEnd "4247"; repFamily "ERVL"; repLeft "4007"; repStart "-1467"; ### ERVLB4_1p22.2c ### chr1 rmsk gene 88638143 88641741 . - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0044"; model_cov "2802"; model_pct "49.0"; chr1 rmsk exon 88638143 88640386 12556 - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0044"; repClass "LTR"; repEnd "5200"; repFamily "ERVL"; repLeft "2961"; repStart "-514"; chr1 rmsk exon 88640600 88641163 3486 - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0044"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "1"; repStart "-5150"; chr1 rmsk exon 88641164 88641238 249 - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0044"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "486"; repStart "0"; chr1 rmsk exon 88641283 88641296 359 - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0044"; repClass "LTR"; repEnd "536"; repFamily "ERVL"; repLeft "523"; repStart "-20"; chr1 rmsk exon 88641377 88641741 1826 - . gene_id "ERVLB4_1p22.2c"; transcript_id "ERVLB4_1p22.2c"; locus "ERVLB4_1p22.2c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0044"; repClass "LTR"; repEnd "522"; repFamily "ERVL"; repLeft "100"; repStart "-34"; ### HERVL_1p22.2b ### chr1 rmsk gene 88897656 88904723 . + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0038"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 88897656 88898051 2637 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr1 rmsk exon 88898140 88898194 351 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; chr1 rmsk exon 88898195 88898606 45372 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "-5229"; repStart "1"; chr1 rmsk exon 88898894 88904109 45372 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "426"; chr1 rmsk exon 88904110 88904488 3242 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr1 rmsk exon 88904665 88904723 3242 + . gene_id "HERVL_1p22.2b"; transcript_id "HERVL_1p22.2b"; locus "HERVL_1p22.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0038"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### HERVW_1p22.2a ### chr1 rmsk gene 88924529 88931881 . + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0009"; model_cov "6345"; model_pct "73.6"; chr1 rmsk exon 88924529 88925030 3897 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "250"; chr1 rmsk exon 88925031 88926329 49551 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "1366"; repFamily "ERV1"; repLeft "-7260"; repStart "2"; chr1 rmsk exon 88926616 88931258 49551 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1367"; chr1 rmsk exon 88931252 88931290 251 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr1 rmsk exon 88931281 88931572 2524 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr1 rmsk exon 88931573 88931881 2391 + . gene_id "HERVW_1p22.2a"; transcript_id "HERVW_1p22.2a"; locus "HERVW_1p22.2a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0009"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER101_1p22.2a ### chr1 rmsk gene 89048082 89049754 . + . gene_id "MER101_1p22.2a"; transcript_id "MER101_1p22.2a"; locus "MER101_1p22.2a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0021"; model_cov "1078"; model_pct "16.2"; chr1 rmsk exon 89048082 89048835 5595 + . gene_id "MER101_1p22.2a"; transcript_id "MER101_1p22.2a"; locus "MER101_1p22.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0021"; repClass "LTR"; repEnd "6322"; repFamily "ERV1"; repLeft "-317"; repStart "5543"; chr1 rmsk exon 89049147 89049432 5595 + . gene_id "MER101_1p22.2a"; transcript_id "MER101_1p22.2a"; locus "MER101_1p22.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0021"; repClass "LTR"; repEnd "6622"; repFamily "ERV1"; repLeft "-17"; repStart "6323"; chr1 rmsk exon 89049433 89049754 1438 + . gene_id "MER101_1p22.2a"; transcript_id "MER101_1p22.2a"; locus "MER101_1p22.2a"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0021"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "-107"; repStart "24"; ### HERVKC4_1p22.2 ### chr1 rmsk gene 89086283 89088619 . - . gene_id "HERVKC4_1p22.2"; transcript_id "HERVKC4_1p22.2"; locus "HERVKC4_1p22.2"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0001"; model_cov "3410"; model_pct "64.8"; chr1 rmsk exon 89086283 89087643 7203 - . gene_id "HERVKC4_1p22.2"; transcript_id "HERVKC4_1p22.2"; locus "HERVKC4_1p22.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0001"; repClass "LTR"; repEnd "3706"; repFamily "ERVK"; repLeft "1264"; repStart "-1556"; chr1 rmsk exon 89087649 89088619 6717 - . gene_id "HERVKC4_1p22.2"; transcript_id "HERVKC4_1p22.2"; locus "HERVKC4_1p22.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0001"; repClass "LTR"; repEnd "3188"; repFamily "ERVK"; repLeft "2220"; repStart "-2074"; ### MER61_1p22.2a ### chr1 rmsk gene 89178360 89179158 . + . gene_id "MER61_1p22.2a"; transcript_id "MER61_1p22.2a"; locus "MER61_1p22.2a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0006"; model_cov "793"; model_pct "15.2"; chr1 rmsk exon 89178360 89179158 4584 + . gene_id "MER61_1p22.2a"; transcript_id "MER61_1p22.2a"; locus "MER61_1p22.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0006"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "-2572"; repStart "1852"; ### ERV316A3_1p22.2c ### chr1 rmsk gene 89275321 89277392 . - . gene_id "ERV316A3_1p22.2c"; transcript_id "ERV316A3_1p22.2c"; locus "ERV316A3_1p22.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0075"; model_cov "1908"; model_pct "36.5"; chr1 rmsk exon 89275321 89275638 652 - . gene_id "ERV316A3_1p22.2c"; transcript_id "ERV316A3_1p22.2c"; locus "ERV316A3_1p22.2c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0075"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "132"; repStart "-35"; chr1 rmsk exon 89275821 89277392 1611 - . gene_id "ERV316A3_1p22.2c"; transcript_id "ERV316A3_1p22.2c"; locus "ERV316A3_1p22.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0075"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "3007"; repStart "-311"; ### MER61_1p22.2b ### chr1 rmsk gene 89312773 89316331 . - . gene_id "MER61_1p22.2b"; transcript_id "MER61_1p22.2b"; locus "MER61_1p22.2b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0007"; model_cov "2864"; model_pct "54.9"; chr1 rmsk exon 89312773 89313186 2772 - . gene_id "MER61_1p22.2b"; transcript_id "MER61_1p22.2b"; locus "MER61_1p22.2b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0007"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "13"; repStart "0"; chr1 rmsk exon 89313188 89314608 6505 - . gene_id "MER61_1p22.2b"; transcript_id "MER61_1p22.2b"; locus "MER61_1p22.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0007"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3755"; repStart "0"; chr1 rmsk exon 89314609 89315914 8687 - . gene_id "MER61_1p22.2b"; transcript_id "MER61_1p22.2b"; locus "MER61_1p22.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0007"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "2295"; repStart "-1644"; chr1 rmsk exon 89316212 89316331 8687 - . gene_id "MER61_1p22.2b"; transcript_id "MER61_1p22.2b"; locus "MER61_1p22.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0007"; repClass "LTR"; repEnd "2294"; repFamily "ERV1"; repLeft "2170"; repStart "-2923"; ### HUERSP2_1p22.2 ### chr1 rmsk gene 89343973 89345043 . + . gene_id "HUERSP2_1p22.2"; transcript_id "HUERSP2_1p22.2"; locus "HUERSP2_1p22.2"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0003"; model_cov "322"; model_pct "10.4"; chr1 rmsk exon 89343973 89344296 2157 + . gene_id "HUERSP2_1p22.2"; transcript_id "HUERSP2_1p22.2"; locus "HUERSP2_1p22.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0003"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2766"; chr1 rmsk exon 89344297 89345043 4265 + . gene_id "HUERSP2_1p22.2"; transcript_id "HUERSP2_1p22.2"; locus "HUERSP2_1p22.2"; repName "LTR1F1"; geneRegion "ltr"; locid "HUERS-P2-int_0003"; repClass "LTR"; repEnd "729"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p22.2c ### chr1 rmsk gene 89345044 89349193 . + . gene_id "HERVL_1p22.2c"; transcript_id "HERVL_1p22.2c"; locus "HERVL_1p22.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0039"; model_cov "3853"; model_pct "68.1"; chr1 rmsk exon 89345044 89348651 21208 + . gene_id "HERVL_1p22.2c"; transcript_id "HERVL_1p22.2c"; locus "HERVL_1p22.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0039"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1801"; chr1 rmsk exon 89348652 89349193 2098 + . gene_id "HERVL_1p22.2c"; transcript_id "HERVL_1p22.2c"; locus "HERVL_1p22.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0039"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-8"; repStart "-100"; ### MER101_1p22.2b ### chr1 rmsk gene 89429509 89431206 . - . gene_id "MER101_1p22.2b"; transcript_id "MER101_1p22.2b"; locus "MER101_1p22.2b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0022"; model_cov "1068"; model_pct "16.1"; chr1 rmsk exon 89429509 89429830 1440 - . gene_id "MER101_1p22.2b"; transcript_id "MER101_1p22.2b"; locus "MER101_1p22.2b"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0022"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "24"; repStart "-107"; chr1 rmsk exon 89429831 89430116 5262 - . gene_id "MER101_1p22.2b"; transcript_id "MER101_1p22.2b"; locus "MER101_1p22.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0022"; repClass "LTR"; repEnd "6622"; repFamily "ERV1"; repLeft "6314"; repStart "-17"; chr1 rmsk exon 89430429 89431206 5262 - . gene_id "MER101_1p22.2b"; transcript_id "MER101_1p22.2b"; locus "MER101_1p22.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0022"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "5553"; repStart "-326"; ### HERVL_1p22.2d ### chr1 rmsk gene 89437349 89443684 . - . gene_id "HERVL_1p22.2d"; transcript_id "HERVL_1p22.2d"; locus "HERVL_1p22.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0040"; model_cov "4889"; model_pct "86.5"; chr1 rmsk exon 89437349 89437865 3703 - . gene_id "HERVL_1p22.2d"; transcript_id "HERVL_1p22.2d"; locus "HERVL_1p22.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0040"; repClass "LTR"; repEnd "4885"; repFamily "ERVL"; repLeft "4370"; repStart "-769"; chr1 rmsk exon 89438985 89443236 31144 - . gene_id "HERVL_1p22.2d"; transcript_id "HERVL_1p22.2d"; locus "HERVL_1p22.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0040"; repClass "LTR"; repEnd "4375"; repFamily "ERVL"; repLeft "1"; repStart "-1279"; chr1 rmsk exon 89443237 89443684 3124 - . gene_id "HERVL_1p22.2d"; transcript_id "HERVL_1p22.2d"; locus "HERVL_1p22.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0040"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1p22.2d ### chr1 rmsk gene 90626809 90628309 . + . gene_id "ERV316A3_1p22.2d"; transcript_id "ERV316A3_1p22.2d"; locus "ERV316A3_1p22.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0076"; model_cov "994"; model_pct "19.0"; chr1 rmsk exon 90626809 90626946 1923 + . gene_id "ERV316A3_1p22.2d"; transcript_id "ERV316A3_1p22.2d"; locus "ERV316A3_1p22.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0076"; repClass "LTR"; repEnd "1135"; repFamily "ERVL"; repLeft "-4091"; repStart "991"; chr1 rmsk exon 90627260 90628153 1923 + . gene_id "ERV316A3_1p22.2d"; transcript_id "ERV316A3_1p22.2d"; locus "ERV316A3_1p22.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0076"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "-3240"; repStart "1136"; chr1 rmsk exon 90628154 90628309 443 + . gene_id "ERV316A3_1p22.2d"; transcript_id "ERV316A3_1p22.2d"; locus "ERV316A3_1p22.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0076"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "277"; ### ERVLE_1p22.2 ### chr1 rmsk gene 90778834 90780083 . + . gene_id "ERVLE_1p22.2"; transcript_id "ERVLE_1p22.2"; locus "ERVLE_1p22.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0144"; model_cov "1243"; model_pct "21.9"; chr1 rmsk exon 90778834 90779227 1225 + . gene_id "ERVLE_1p22.2"; transcript_id "ERVLE_1p22.2"; locus "ERVLE_1p22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0144"; repClass "LTR"; repEnd "4550"; repFamily "ERVL"; repLeft "-1117"; repStart "4148"; chr1 rmsk exon 90779248 90780083 1395 + . gene_id "ERVLE_1p22.2"; transcript_id "ERVLE_1p22.2"; locus "ERVLE_1p22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0144"; repClass "LTR"; repEnd "5573"; repFamily "ERVL"; repLeft "-94"; repStart "4732"; ### HERVL_1p22.2e ### chr1 rmsk gene 91039877 91041730 . + . gene_id "HERVL_1p22.2e"; transcript_id "HERVL_1p22.2e"; locus "HERVL_1p22.2e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0041"; model_cov "1129"; model_pct "20.0"; chr1 rmsk exon 91039877 91040291 2737 + . gene_id "HERVL_1p22.2e"; transcript_id "HERVL_1p22.2e"; locus "HERVL_1p22.2e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0041"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr1 rmsk exon 91040590 91041730 8316 + . gene_id "HERVL_1p22.2e"; transcript_id "HERVL_1p22.2e"; locus "HERVL_1p22.2e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0041"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "-4524"; repStart "1"; ### HERVL_1p22.2f ### chr1 rmsk gene 91041963 91046245 . + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0042"; model_cov "3528"; model_pct "62.4"; chr1 rmsk exon 91041963 91041995 3635 + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0042"; repClass "LTR"; repEnd "1035"; repFamily "ERVL"; repLeft "-4619"; repStart "1030"; chr1 rmsk exon 91042293 91042770 3635 + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0042"; repClass "LTR"; repEnd "1514"; repFamily "ERVL"; repLeft "-4140"; repStart "1036"; chr1 rmsk exon 91042777 91044666 14101 + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0042"; repClass "LTR"; repEnd "4187"; repFamily "ERVL"; repLeft "-1467"; repStart "2319"; chr1 rmsk exon 91044655 91045816 8753 + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0042"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4477"; chr1 rmsk exon 91045817 91046245 3105 + . gene_id "HERVL_1p22.2f"; transcript_id "HERVL_1p22.2f"; locus "HERVL_1p22.2f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0042"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_1p22.2g ### chr1 rmsk gene 91055335 91056968 . - . gene_id "HERVL_1p22.2g"; transcript_id "HERVL_1p22.2g"; locus "HERVL_1p22.2g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0043"; model_cov "1194"; model_pct "21.1"; chr1 rmsk exon 91055335 91055780 3441 - . gene_id "HERVL_1p22.2g"; transcript_id "HERVL_1p22.2g"; locus "HERVL_1p22.2g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0043"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 91055781 91056968 9407 - . gene_id "HERVL_1p22.2g"; transcript_id "HERVL_1p22.2g"; locus "HERVL_1p22.2g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0043"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4460"; repStart "0"; ### HUERSP1_1p22.2 ### chr1 rmsk gene 91083892 91091004 . + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0008"; model_cov "4601"; model_pct "73.5"; chr1 rmsk exon 91083892 91084573 5799 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr1 rmsk exon 91084579 91086347 13670 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "1836"; repFamily "ERV1"; repLeft "-4427"; repStart "19"; chr1 rmsk exon 91086345 91088023 21752 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "5155"; repFamily "ERV1"; repLeft "-1108"; repStart "3475"; chr1 rmsk exon 91088304 91088785 21752 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "5624"; repFamily "ERV1"; repLeft "-639"; repStart "5156"; chr1 rmsk exon 91089081 91089409 21752 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "5952"; repFamily "ERV1"; repLeft "-311"; repStart "5625"; chr1 rmsk exon 91090003 91090313 21752 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "5953"; chr1 rmsk exon 91090314 91091004 5990 + . gene_id "HUERSP1_1p22.2"; transcript_id "HUERSP1_1p22.2"; locus "HUERSP1_1p22.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0008"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_1p22.2b ### chr1 rmsk gene 91179132 91181141 . + . gene_id "HERVW_1p22.2b"; transcript_id "HERVW_1p22.2b"; locus "HERVW_1p22.2b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0010"; model_cov "1658"; model_pct "19.2"; chr1 rmsk exon 91179132 91180502 11568 + . gene_id "HERVW_1p22.2b"; transcript_id "HERVW_1p22.2b"; locus "HERVW_1p22.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0010"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4651"; chr1 rmsk exon 91180526 91180815 2400 + . gene_id "HERVW_1p22.2b"; transcript_id "HERVW_1p22.2b"; locus "HERVW_1p22.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0010"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8336"; chr1 rmsk exon 91180816 91181141 2860 + . gene_id "HERVW_1p22.2b"; transcript_id "HERVW_1p22.2b"; locus "HERVW_1p22.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0010"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HARLEQUIN_1p22.2 ### chr1 rmsk gene 91206976 91211402 . - . gene_id "HARLEQUIN_1p22.2"; transcript_id "HARLEQUIN_1p22.2"; locus "HARLEQUIN_1p22.2"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0009"; model_cov "7443"; model_pct "100.0"; chr1 rmsk exon 91206976 91210739 21721 - . gene_id "HARLEQUIN_1p22.2"; transcript_id "HARLEQUIN_1p22.2"; locus "HARLEQUIN_1p22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0009"; repClass "LTR"; repEnd "6891"; repFamily "ERV1"; repLeft "162"; repStart "-5"; chr1 rmsk exon 91210796 91211402 21721 - . gene_id "HARLEQUIN_1p22.2"; transcript_id "HARLEQUIN_1p22.2"; locus "HARLEQUIN_1p22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0009"; repClass "LTR"; repEnd "1002"; repFamily "ERV1"; repLeft "288"; repStart "-5894"; ### HML5_1p22.2 ### chr1 rmsk gene 91217603 91221324 . + . gene_id "HML5_1p22.2"; transcript_id "HML5_1p22.2"; locus "HML5_1p22.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0003"; model_cov "4447"; model_pct "65.0"; chr1 rmsk exon 91217603 91218055 3398 + . gene_id "HML5_1p22.2"; transcript_id "HML5_1p22.2"; locus "HML5_1p22.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0003"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 91218056 91218838 5177 + . gene_id "HML5_1p22.2"; transcript_id "HML5_1p22.2"; locus "HML5_1p22.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0003"; repClass "LTR"; repEnd "799"; repFamily "ERVK"; repLeft "-6038"; repStart "1"; chr1 rmsk exon 91218840 91220887 13478 + . gene_id "HML5_1p22.2"; transcript_id "HML5_1p22.2"; locus "HML5_1p22.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0003"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3188"; chr1 rmsk exon 91220888 91221324 3323 + . gene_id "HML5_1p22.2"; transcript_id "HML5_1p22.2"; locus "HML5_1p22.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0003"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_1p22.2h ### chr1 rmsk gene 91460655 91469313 . - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0044"; model_cov "5649"; model_pct "99.9"; chr1 rmsk exon 91460655 91461060 2780 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "3"; repStart "-40"; chr1 rmsk exon 91461063 91464982 42249 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1711"; repStart "0"; chr1 rmsk exon 91465286 91466415 42249 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "1710"; repFamily "ERVL"; repLeft "578"; repStart "-3944"; chr1 rmsk exon 91467283 91467732 42249 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "577"; repFamily "ERVL"; repLeft "154"; repStart "-5077"; chr1 rmsk exon 91468207 91468252 42249 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "123"; repStart "-5501"; chr1 rmsk exon 91468545 91468670 42249 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "1"; repStart "-5532"; chr1 rmsk exon 91468671 91468710 2949 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "392"; repStart "0"; chr1 rmsk exon 91468923 91469313 2949 - . gene_id "HERVL_1p22.2h"; transcript_id "HERVL_1p22.2h"; locus "HERVL_1p22.2h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0044"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "2"; repStart "-53"; ### HARLEQUIN_1p22.1 ### chr1 rmsk gene 91662451 91670747 . - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0010"; model_cov "7073"; model_pct "100.0"; chr1 rmsk exon 91662451 91662911 3766 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 91662912 91668000 40469 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1806"; repStart "0"; chr1 rmsk exon 91667982 91668643 4354 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "769"; repStart "-5474"; chr1 rmsk exon 91668640 91668675 257 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "-112"; repFamily "ERV1"; repLeft "-147"; repStart "-7008"; chr1 rmsk exon 91668676 91668715 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668712 91668751 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668748 91668787 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668784 91668824 275 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "765"; repStart "-6088"; chr1 rmsk exon 91668820 91668859 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668856 91668895 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668892 91668931 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91668928 91668968 294 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "765"; repStart "-6088"; chr1 rmsk exon 91668964 91669003 303 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669000 91669040 258 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "-112"; repFamily "ERV1"; repLeft "-152"; repStart "-7008"; chr1 rmsk exon 91669036 91669075 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669072 91669111 303 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669108 91669147 303 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669144 91669183 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669180 91669219 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669216 91669255 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669252 91669291 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669288 91669327 284 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669324 91669363 303 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "769"; repStart "-6088"; chr1 rmsk exon 91669360 91669904 4306 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "263"; repStart "-6088"; chr1 rmsk exon 91670288 91670747 3683 - . gene_id "HARLEQUIN_1p22.1"; transcript_id "HARLEQUIN_1p22.1"; locus "HARLEQUIN_1p22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0010"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_1p22.1a ### chr1 rmsk gene 91922727 91924229 . - . gene_id "MER4B_1p22.1a"; transcript_id "MER4B_1p22.1a"; locus "MER4B_1p22.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0012"; model_cov "940"; model_pct "13.9"; chr1 rmsk exon 91922727 91922789 4739 - . gene_id "MER4B_1p22.1a"; transcript_id "MER4B_1p22.1a"; locus "MER4B_1p22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0012"; repClass "LTR"; repEnd "4226"; repFamily "ERV1"; repLeft "4169"; repStart "-2532"; chr1 rmsk exon 91923086 91923503 4739 - . gene_id "MER4B_1p22.1a"; transcript_id "MER4B_1p22.1a"; locus "MER4B_1p22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0012"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "3744"; repStart "-2590"; chr1 rmsk exon 91923813 91924229 4739 - . gene_id "MER4B_1p22.1a"; transcript_id "MER4B_1p22.1a"; locus "MER4B_1p22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0012"; repClass "LTR"; repEnd "3743"; repFamily "ERV1"; repLeft "3284"; repStart "-3015"; ### ERVLE_1p22.1a ### chr1 rmsk gene 92148017 92150067 . + . gene_id "ERVLE_1p22.1a"; transcript_id "ERVLE_1p22.1a"; locus "ERVLE_1p22.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0145"; model_cov "1616"; model_pct "28.5"; chr1 rmsk exon 92148017 92149509 6157 + . gene_id "ERVLE_1p22.1a"; transcript_id "ERVLE_1p22.1a"; locus "ERVLE_1p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0145"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "-8"; repStart "4043"; chr1 rmsk exon 92149511 92150067 2330 + . gene_id "ERVLE_1p22.1a"; transcript_id "ERVLE_1p22.1a"; locus "ERVLE_1p22.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0145"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-54"; repStart "3"; ### HERVL_1p22.1a ### chr1 rmsk gene 92614392 92619505 . + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0046"; model_cov "4172"; model_pct "73.8"; chr1 rmsk exon 92614392 92614769 3286 + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0046"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr1 rmsk exon 92614886 92614947 3286 + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0046"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "385"; chr1 rmsk exon 92614948 92616640 12874 + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0046"; repClass "LTR"; repEnd "1737"; repFamily "ERVL"; repLeft "-3917"; repStart "1"; chr1 rmsk exon 92616635 92619062 19220 + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0046"; repClass "LTR"; repEnd "5645"; repFamily "ERVL"; repLeft "-9"; repStart "3209"; chr1 rmsk exon 92619080 92619505 2665 + . gene_id "HERVL_1p22.1a"; transcript_id "HERVL_1p22.1a"; locus "HERVL_1p22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0046"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_1p22.1a ### chr1 rmsk gene 92991647 92993456 . - . gene_id "ERV316A3_1p22.1a"; transcript_id "ERV316A3_1p22.1a"; locus "ERV316A3_1p22.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0078"; model_cov "1832"; model_pct "35.1"; chr1 rmsk exon 92991647 92993456 7056 - . gene_id "ERV316A3_1p22.1a"; transcript_id "ERV316A3_1p22.1a"; locus "ERV316A3_1p22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0078"; repClass "LTR"; repEnd "4426"; repFamily "ERVL"; repLeft "2594"; repStart "-800"; ### ERVLE_1p22.1b ### chr1 rmsk gene 92993458 92994531 . + . gene_id "ERVLE_1p22.1b"; transcript_id "ERVLE_1p22.1b"; locus "ERVLE_1p22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0146"; model_cov "1117"; model_pct "19.7"; chr1 rmsk exon 92993458 92994182 1986 + . gene_id "ERVLE_1p22.1b"; transcript_id "ERVLE_1p22.1b"; locus "ERVLE_1p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0146"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "-1626"; repStart "3275"; chr1 rmsk exon 92994196 92994531 982 + . gene_id "ERVLE_1p22.1b"; transcript_id "ERVLE_1p22.1b"; locus "ERVLE_1p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0146"; repClass "LTR"; repEnd "4450"; repFamily "ERVL"; repLeft "-1217"; repStart "4099"; ### ERV316A3_1p22.1b ### chr1 rmsk gene 93027536 93028194 . - . gene_id "ERV316A3_1p22.1b"; transcript_id "ERV316A3_1p22.1b"; locus "ERV316A3_1p22.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0079"; model_cov "659"; model_pct "12.6"; chr1 rmsk exon 93027536 93027752 1022 - . gene_id "ERV316A3_1p22.1b"; transcript_id "ERV316A3_1p22.1b"; locus "ERV316A3_1p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0079"; repClass "LTR"; repEnd "4324"; repFamily "ERVL"; repLeft "4111"; repStart "-902"; chr1 rmsk exon 93027785 93028194 1696 - . gene_id "ERV316A3_1p22.1b"; transcript_id "ERV316A3_1p22.1b"; locus "ERV316A3_1p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0079"; repClass "LTR"; repEnd "4043"; repFamily "ERVL"; repLeft "3597"; repStart "-1183"; ### LTR23_1p22.1 ### chr1 rmsk gene 93409486 93412791 . - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0003"; model_cov "1847"; model_pct "36.1"; chr1 rmsk exon 93409486 93409773 1983 - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0003"; repClass "LTR"; repEnd "2480"; repFamily "ERV1"; repLeft "2182"; repStart "-2643"; chr1 rmsk exon 93410078 93410469 1983 - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0003"; repClass "LTR"; repEnd "2181"; repFamily "ERV1"; repLeft "1782"; repStart "-2942"; chr1 rmsk exon 93410510 93411099 1868 - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0003"; repClass "LTR"; repEnd "1795"; repFamily "ERV1"; repLeft "1207"; repStart "-3328"; chr1 rmsk exon 93411325 93411706 1440 - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0003"; repClass "LTR"; repEnd "1435"; repFamily "ERV1"; repLeft "1134"; repStart "-3688"; chr1 rmsk exon 93412539 93412791 1440 - . gene_id "LTR23_1p22.1"; transcript_id "LTR23_1p22.1"; locus "LTR23_1p22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0003"; repClass "LTR"; repEnd "1133"; repFamily "ERV1"; repLeft "872"; repStart "-3990"; ### MER4B_1p22.1b ### chr1 rmsk gene 93643913 93646320 . + . gene_id "MER4B_1p22.1b"; transcript_id "MER4B_1p22.1b"; locus "MER4B_1p22.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0014"; model_cov "1611"; model_pct "23.8"; chr1 rmsk exon 93643913 93644677 6031 + . gene_id "MER4B_1p22.1b"; transcript_id "MER4B_1p22.1b"; locus "MER4B_1p22.1b"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0014"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 93644685 93645223 3827 + . gene_id "MER4B_1p22.1b"; transcript_id "MER4B_1p22.1b"; locus "MER4B_1p22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0014"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-6211"; repStart "8"; chr1 rmsk exon 93645217 93645694 2666 + . gene_id "MER4B_1p22.1b"; transcript_id "MER4B_1p22.1b"; locus "MER4B_1p22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0014"; repClass "LTR"; repEnd "1199"; repFamily "ERV1"; repLeft "-5559"; repStart "675"; chr1 rmsk exon 93645757 93646320 2161 + . gene_id "MER4B_1p22.1b"; transcript_id "MER4B_1p22.1b"; locus "MER4B_1p22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0014"; repClass "LTR"; repEnd "2468"; repFamily "ERV1"; repLeft "-4290"; repStart "1920"; ### MER4B_1p22.1c ### chr1 rmsk gene 93646622 93647466 . + . gene_id "MER4B_1p22.1c"; transcript_id "MER4B_1p22.1c"; locus "MER4B_1p22.1c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0015"; model_cov "852"; model_pct "12.6"; chr1 rmsk exon 93646622 93647252 3069 + . gene_id "MER4B_1p22.1c"; transcript_id "MER4B_1p22.1c"; locus "MER4B_1p22.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0015"; repClass "LTR"; repEnd "2125"; repFamily "ERV1"; repLeft "-4633"; repStart "1469"; chr1 rmsk exon 93647264 93647313 389 + . gene_id "MER4B_1p22.1c"; transcript_id "MER4B_1p22.1c"; locus "MER4B_1p22.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0015"; repClass "LTR"; repEnd "4067"; repFamily "ERV1"; repLeft "-2691"; repStart "4018"; chr1 rmsk exon 93647323 93647466 975 + . gene_id "MER4B_1p22.1c"; transcript_id "MER4B_1p22.1c"; locus "MER4B_1p22.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0015"; repClass "LTR"; repEnd "4599"; repFamily "ERV1"; repLeft "-2159"; repStart "4452"; ### HERVH_1p22.1 ### chr1 rmsk gene 93830337 93837088 . + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0046"; model_cov "5270"; model_pct "68.3"; chr1 rmsk exon 93830337 93830747 2196 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 93830748 93833028 10905 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "2558"; repFamily "ERV1"; repLeft "-5155"; repStart "1"; chr1 rmsk exon 93834104 93834387 8189 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "2559"; chr1 rmsk exon 93834388 93836241 8323 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4416"; chr1 rmsk exon 93836260 93836680 2755 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7278"; chr1 rmsk exon 93836681 93837088 2276 + . gene_id "HERVH_1p22.1"; transcript_id "HERVH_1p22.1"; locus "HERVH_1p22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0046"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p22.1b ### chr1 rmsk gene 94161627 94167221 . - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0047"; model_cov "4431"; model_pct "78.4"; chr1 rmsk exon 94161627 94162052 3331 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 94162053 94162277 14256 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5429"; repStart "0"; chr1 rmsk exon 94162579 94164104 14256 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "5428"; repFamily "ERVL"; repLeft "3883"; repStart "-226"; chr1 rmsk exon 94164123 94166151 16382 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "3366"; repFamily "ERVL"; repLeft "1335"; repStart "-2288"; chr1 rmsk exon 94166150 94166772 4757 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "631"; repFamily "ERVL"; repLeft "1"; repStart "-5023"; chr1 rmsk exon 94166773 94167221 2991 - . gene_id "HERVL_1p22.1b"; transcript_id "HERVL_1p22.1b"; locus "HERVL_1p22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0047"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1p22.1c ### chr1 rmsk gene 94269983 94272882 . + . gene_id "ERV316A3_1p22.1c"; transcript_id "ERV316A3_1p22.1c"; locus "ERV316A3_1p22.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0080"; model_cov "1778"; model_pct "34.0"; chr1 rmsk exon 94269983 94270356 1026 + . gene_id "ERV316A3_1p22.1c"; transcript_id "ERV316A3_1p22.1c"; locus "ERV316A3_1p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0080"; repClass "LTR"; repEnd "3220"; repFamily "ERVL"; repLeft "-2006"; repStart "2827"; chr1 rmsk exon 94270361 94270887 1330 + . gene_id "ERV316A3_1p22.1c"; transcript_id "ERV316A3_1p22.1c"; locus "ERV316A3_1p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0080"; repClass "LTR"; repEnd "3627"; repFamily "ERVL"; repLeft "-1599"; repStart "3094"; chr1 rmsk exon 94271577 94272408 2597 + . gene_id "ERV316A3_1p22.1c"; transcript_id "ERV316A3_1p22.1c"; locus "ERV316A3_1p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0080"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4374"; chr1 rmsk exon 94272409 94272882 2053 + . gene_id "ERV316A3_1p22.1c"; transcript_id "ERV316A3_1p22.1c"; locus "ERV316A3_1p22.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0080"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL40_1p21.3 ### chr1 rmsk gene 94349807 94353439 . + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0012"; model_cov "1307"; model_pct "23.6"; chr1 rmsk exon 94349807 94350248 1845 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 94350284 94350444 616 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "212"; repFamily "ERVL"; repLeft "-5318"; repStart "47"; chr1 rmsk exon 94350449 94350754 990 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "1203"; repFamily "ERVL"; repLeft "-4327"; repStart "892"; chr1 rmsk exon 94350753 94351274 1722 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "4441"; repFamily "ERVL"; repLeft "-1089"; repStart "3876"; chr1 rmsk exon 94352502 94352757 1209 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "5513"; repFamily "ERVL"; repLeft "-17"; repStart "5247"; chr1 rmsk exon 94352788 94352856 1395 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "169"; repFamily "ERVL"; repLeft "-293"; repStart "123"; chr1 rmsk exon 94353159 94353439 1395 + . gene_id "HERVL40_1p21.3"; transcript_id "HERVL40_1p21.3"; locus "HERVL40_1p21.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0012"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "170"; ### ERVLE_1p21.3a ### chr1 rmsk gene 94389823 94391768 . - . gene_id "ERVLE_1p21.3a"; transcript_id "ERVLE_1p21.3a"; locus "ERVLE_1p21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0147"; model_cov "1586"; model_pct "28.0"; chr1 rmsk exon 94389823 94390290 2326 - . gene_id "ERVLE_1p21.3a"; transcript_id "ERVLE_1p21.3a"; locus "ERVLE_1p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0147"; repClass "LTR"; repEnd "2736"; repFamily "ERVL"; repLeft "2274"; repStart "-2931"; chr1 rmsk exon 94390603 94391257 2326 - . gene_id "ERVLE_1p21.3a"; transcript_id "ERVLE_1p21.3a"; locus "ERVLE_1p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0147"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "1603"; repStart "-3394"; chr1 rmsk exon 94391328 94391768 2326 - . gene_id "ERVLE_1p21.3a"; transcript_id "ERVLE_1p21.3a"; locus "ERVLE_1p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0147"; repClass "LTR"; repEnd "1602"; repFamily "ERVL"; repLeft "1148"; repStart "-4065"; ### ERVLE_1p21.3b ### chr1 rmsk gene 94393790 94394793 . - . gene_id "ERVLE_1p21.3b"; transcript_id "ERVLE_1p21.3b"; locus "ERVLE_1p21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0148"; model_cov "929"; model_pct "16.4"; chr1 rmsk exon 94393790 94394457 2051 - . gene_id "ERVLE_1p21.3b"; transcript_id "ERVLE_1p21.3b"; locus "ERVLE_1p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0148"; repClass "LTR"; repEnd "3140"; repFamily "ERVL"; repLeft "2440"; repStart "-2527"; chr1 rmsk exon 94394569 94394793 437 - . gene_id "ERVLE_1p21.3b"; transcript_id "ERVLE_1p21.3b"; locus "ERVLE_1p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0148"; repClass "LTR"; repEnd "705"; repFamily "ERVL"; repLeft "476"; repStart "-4962"; ### HML3_1p21.3 ### chr1 rmsk gene 94444820 94450789 . + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0012"; model_cov "5049"; model_pct "83.9"; chr1 rmsk exon 94444820 94445298 3663 + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0012"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "33"; chr1 rmsk exon 94445299 94445706 2802 + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0012"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5589"; repStart "1"; chr1 rmsk exon 94445706 94448660 23697 + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0012"; repClass "LTR"; repEnd "3931"; repFamily "ERVK"; repLeft "-2090"; repStart "953"; chr1 rmsk exon 94448659 94450303 13331 + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0012"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4381"; chr1 rmsk exon 94450304 94450789 3923 + . gene_id "HML3_1p21.3"; transcript_id "HML3_1p21.3"; locus "HML3_1p21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0012"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_1p21.3a ### chr1 rmsk gene 94566478 94572826 . - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0047"; model_cov "5236"; model_pct "67.9"; chr1 rmsk exon 94566478 94566864 2006 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr1 rmsk exon 94566865 94567301 2807 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7277"; repStart "0"; chr1 rmsk exon 94567319 94569055 4926 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr1 rmsk exon 94569046 94569196 963 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 94569176 94570789 14272 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1434"; repStart "-4718"; chr1 rmsk exon 94571090 94572381 14272 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "1433"; repFamily "ERV1"; repLeft "1"; repStart "-6280"; chr1 rmsk exon 94572384 94572826 3127 - . gene_id "HERVH_1p21.3a"; transcript_id "HERVH_1p21.3a"; locus "HERVH_1p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0047"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_1p21.3 ### chr1 rmsk gene 94661344 94669497 . - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0029"; model_cov "6861"; model_pct "100.0"; chr1 rmsk exon 94661344 94661797 2832 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0029"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 94661806 94663361 14007 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5061"; repStart "-2"; chr1 rmsk exon 94663667 94664766 14007 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "5060"; repFamily "ERV1"; repLeft "3942"; repStart "-1538"; chr1 rmsk exon 94664763 94666402 4538 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "786"; repStart "-2819"; chr1 rmsk exon 94667118 94667204 358 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "2981"; repFamily "ERV1"; repLeft "2918"; repStart "-3617"; chr1 rmsk exon 94667214 94667638 1732 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "2538"; repFamily "ERV1"; repLeft "2106"; repStart "-4060"; chr1 rmsk exon 94668380 94668487 382 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-745"; repStart "-7237"; chr1 rmsk exon 94668487 94669028 2537 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0029"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "9"; repStart "-5975"; chr1 rmsk exon 94669041 94669497 3321 - . gene_id "MER4_1p21.3"; transcript_id "MER4_1p21.3"; locus "MER4_1p21.3"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0029"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_1p21.3a ### chr1 rmsk gene 94785085 94786547 . + . gene_id "ERVLB4_1p21.3a"; transcript_id "ERVLB4_1p21.3a"; locus "ERVLB4_1p21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0047"; model_cov "1167"; model_pct "20.4"; chr1 rmsk exon 94785085 94785468 6449 + . gene_id "ERVLB4_1p21.3a"; transcript_id "ERVLB4_1p21.3a"; locus "ERVLB4_1p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0047"; repClass "LTR"; repEnd "2012"; repFamily "ERVL"; repLeft "-3702"; repStart "1634"; chr1 rmsk exon 94785771 94786547 6449 + . gene_id "ERVLB4_1p21.3a"; transcript_id "ERVLB4_1p21.3a"; locus "ERVLB4_1p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0047"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "-2912"; repStart "2013"; ### ERVLE_1p21.3c ### chr1 rmsk gene 95250622 95254066 . - . gene_id "ERVLE_1p21.3c"; transcript_id "ERVLE_1p21.3c"; locus "ERVLE_1p21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0149"; model_cov "2991"; model_pct "52.8"; chr1 rmsk exon 95250622 95250835 655 - . gene_id "ERVLE_1p21.3c"; transcript_id "ERVLE_1p21.3c"; locus "ERVLE_1p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0149"; repClass "LTR"; repEnd "5338"; repFamily "ERVL"; repLeft "5113"; repStart "-329"; chr1 rmsk exon 95250867 95251346 2204 - . gene_id "ERVLE_1p21.3c"; transcript_id "ERVLE_1p21.3c"; locus "ERVLE_1p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0149"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "4550"; repStart "-623"; chr1 rmsk exon 95251642 95252883 5385 - . gene_id "ERVLE_1p21.3c"; transcript_id "ERVLE_1p21.3c"; locus "ERVLE_1p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0149"; repClass "LTR"; repEnd "4549"; repFamily "ERVL"; repLeft "3228"; repStart "-1118"; chr1 rmsk exon 95253193 95254066 5385 - . gene_id "ERVLE_1p21.3c"; transcript_id "ERVLE_1p21.3c"; locus "ERVLE_1p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0149"; repClass "LTR"; repEnd "3306"; repFamily "ERVL"; repLeft "2355"; repStart "-2361"; ### ERVLE_1p21.3d ### chr1 rmsk gene 95572088 95574067 . - . gene_id "ERVLE_1p21.3d"; transcript_id "ERVLE_1p21.3d"; locus "ERVLE_1p21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0150"; model_cov "1480"; model_pct "26.1"; chr1 rmsk exon 95572088 95572441 1048 - . gene_id "ERVLE_1p21.3d"; transcript_id "ERVLE_1p21.3d"; locus "ERVLE_1p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0150"; repClass "LTR"; repEnd "2693"; repFamily "ERVL"; repLeft "2318"; repStart "-2974"; chr1 rmsk exon 95572788 95573307 1215 - . gene_id "ERVLE_1p21.3d"; transcript_id "ERVLE_1p21.3d"; locus "ERVLE_1p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0150"; repClass "LTR"; repEnd "1482"; repFamily "ERVL"; repLeft "911"; repStart "-4185"; chr1 rmsk exon 95573533 95574067 630 - . gene_id "ERVLE_1p21.3d"; transcript_id "ERVLE_1p21.3d"; locus "ERVLE_1p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0150"; repClass "LTR"; repEnd "914"; repFamily "ERVL"; repLeft "380"; repStart "-4753"; ### HERVL_1p21.3a ### chr1 rmsk gene 95644581 95648411 . - . gene_id "HERVL_1p21.3a"; transcript_id "HERVL_1p21.3a"; locus "HERVL_1p21.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0049"; model_cov "3420"; model_pct "60.5"; chr1 rmsk exon 95644581 95645009 3430 - . gene_id "HERVL_1p21.3a"; transcript_id "HERVL_1p21.3a"; locus "HERVL_1p21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0049"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 95645010 95648411 25654 - . gene_id "HERVL_1p21.3a"; transcript_id "HERVL_1p21.3a"; locus "HERVL_1p21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0049"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2234"; repStart "0"; ### MER41_1p21.3 ### chr1 rmsk gene 95895626 95901086 . - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0016"; model_cov "4712"; model_pct "79.2"; chr1 rmsk exon 95895626 95895746 736 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0016"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "509"; repStart "0"; chr1 rmsk exon 95895752 95896136 2543 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0016"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "1"; repStart "-246"; chr1 rmsk exon 95896139 95896873 16795 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5195"; repStart "0"; chr1 rmsk exon 95897187 95898826 16795 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "5194"; repFamily "ERV1"; repLeft "3551"; repStart "-752"; chr1 rmsk exon 95898856 95899088 16795 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "3550"; repFamily "ERV1"; repLeft "3302"; repStart "-2396"; chr1 rmsk exon 95899076 95899877 3556 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "1767"; repFamily "ERV1"; repLeft "576"; repStart "-4179"; chr1 rmsk exon 95899874 95900014 802 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "915"; repStart "-4908"; chr1 rmsk exon 95900317 95900366 802 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "914"; repFamily "ERV1"; repLeft "865"; repStart "-5032"; chr1 rmsk exon 95900344 95900568 1363 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "1618"; repFamily "ERV1"; repLeft "1392"; repStart "-4328"; chr1 rmsk exon 95900570 95901086 2836 - . gene_id "MER41_1p21.3"; transcript_id "MER41_1p21.3"; locus "MER41_1p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0016"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "209"; repStart "-5256"; ### MER61_1p21.3 ### chr1 rmsk gene 96153438 96157822 . - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0009"; model_cov "3973"; model_pct "76.2"; chr1 rmsk exon 96153438 96155783 15035 - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0009"; repClass "LTR"; repEnd "4302"; repFamily "ERV1"; repLeft "1983"; repStart "-915"; chr1 rmsk exon 96155774 96157032 4111 - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0009"; repClass "LTR"; repEnd "1640"; repFamily "ERV1"; repLeft "407"; repStart "-3577"; chr1 rmsk exon 96157045 96157340 1274 - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0009"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "181"; repStart "-4763"; chr1 rmsk exon 96157440 96157591 736 - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0009"; repClass "LTR"; repEnd "152"; repFamily "ERV1"; repLeft "4"; repStart "-5065"; chr1 rmsk exon 96157594 96157822 1381 - . gene_id "MER61_1p21.3"; transcript_id "MER61_1p21.3"; locus "MER61_1p21.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0009"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "203"; repStart "0"; ### ERVLE_1p21.3e ### chr1 rmsk gene 96339548 96342230 . + . gene_id "ERVLE_1p21.3e"; transcript_id "ERVLE_1p21.3e"; locus "ERVLE_1p21.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0151"; model_cov "2173"; model_pct "38.3"; chr1 rmsk exon 96339548 96340361 1760 + . gene_id "ERVLE_1p21.3e"; transcript_id "ERVLE_1p21.3e"; locus "ERVLE_1p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0151"; repClass "LTR"; repEnd "2938"; repFamily "ERVL"; repLeft "-2729"; repStart "2141"; chr1 rmsk exon 96340853 96342230 2870 + . gene_id "ERVLE_1p21.3e"; transcript_id "ERVLE_1p21.3e"; locus "ERVLE_1p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0151"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "-737"; repStart "3554"; ### HERVL_1p21.3b ### chr1 rmsk gene 97407534 97409154 . + . gene_id "HERVL_1p21.3b"; transcript_id "HERVL_1p21.3b"; locus "HERVL_1p21.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0050"; model_cov "1093"; model_pct "19.3"; chr1 rmsk exon 97407534 97408607 8008 + . gene_id "HERVL_1p21.3b"; transcript_id "HERVL_1p21.3b"; locus "HERVL_1p21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0050"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4561"; chr1 rmsk exon 97408608 97409154 1792 + . gene_id "HERVL_1p21.3b"; transcript_id "HERVL_1p21.3b"; locus "HERVL_1p21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0050"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERV316A3_1p21.3a ### chr1 rmsk gene 97679722 97680969 . + . gene_id "ERV316A3_1p21.3a"; transcript_id "ERV316A3_1p21.3a"; locus "ERV316A3_1p21.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0081"; model_cov "1263"; model_pct "24.2"; chr1 rmsk exon 97679722 97680969 3730 + . gene_id "ERV316A3_1p21.3a"; transcript_id "ERV316A3_1p21.3a"; locus "ERV316A3_1p21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0081"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "-2395"; repStart "1568"; ### HUERSP2_1p21.3 ### chr1 rmsk gene 97773376 97774644 . + . gene_id "HUERSP2_1p21.3"; transcript_id "HUERSP2_1p21.3"; locus "HUERSP2_1p21.3"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0004"; model_cov "431"; model_pct "14.0"; chr1 rmsk exon 97773376 97774197 4806 + . gene_id "HUERSP2_1p21.3"; transcript_id "HUERSP2_1p21.3"; locus "HUERSP2_1p21.3"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0004"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 97774201 97774324 448 + . gene_id "HUERSP2_1p21.3"; transcript_id "HUERSP2_1p21.3"; locus "HUERSP2_1p21.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0004"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "5"; chr1 rmsk exon 97774356 97774644 1339 + . gene_id "HUERSP2_1p21.3"; transcript_id "HUERSP2_1p21.3"; locus "HUERSP2_1p21.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0004"; repClass "LTR"; repEnd "531"; repFamily "ERV1"; repLeft "-2557"; repStart "222"; ### ERVLB4_1p21.3b ### chr1 rmsk gene 98642906 98643641 . + . gene_id "ERVLB4_1p21.3b"; transcript_id "ERVLB4_1p21.3b"; locus "ERVLB4_1p21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0048"; model_cov "735"; model_pct "12.9"; chr1 rmsk exon 98642906 98643641 2758 + . gene_id "ERVLB4_1p21.3b"; transcript_id "ERVLB4_1p21.3b"; locus "ERVLB4_1p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0048"; repClass "LTR"; repEnd "5706"; repFamily "ERVL"; repLeft "-8"; repStart "4971"; ### ERVLE_1p21.3f ### chr1 rmsk gene 98653444 98654702 . - . gene_id "ERVLE_1p21.3f"; transcript_id "ERVLE_1p21.3f"; locus "ERVLE_1p21.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0152"; model_cov "1252"; model_pct "22.1"; chr1 rmsk exon 98653444 98654702 4601 - . gene_id "ERVLE_1p21.3f"; transcript_id "ERVLE_1p21.3f"; locus "ERVLE_1p21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0152"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "3509"; repStart "-906"; ### ERVLE_1p21.3g ### chr1 rmsk gene 98657373 98659580 . + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0153"; model_cov "1223"; model_pct "21.6"; chr1 rmsk exon 98657373 98657420 274 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "3267"; repFamily "ERVL"; repLeft "-2400"; repStart "3225"; chr1 rmsk exon 98657887 98657956 274 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "-2331"; repStart "3268"; chr1 rmsk exon 98658072 98658698 978 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "4168"; repFamily "ERVL"; repLeft "-1499"; repStart "3503"; chr1 rmsk exon 98658727 98659011 408 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-1092"; repStart "4223"; chr1 rmsk exon 98659164 98659232 314 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "4833"; repFamily "ERVL"; repLeft "-834"; repStart "4769"; chr1 rmsk exon 98659543 98659580 314 + . gene_id "ERVLE_1p21.3g"; transcript_id "ERVLE_1p21.3g"; locus "ERVLE_1p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0153"; repClass "LTR"; repEnd "4866"; repFamily "ERVL"; repLeft "-801"; repStart "4834"; ### ERVLB4_1p21.3c ### chr1 rmsk gene 98773793 98775877 . + . gene_id "ERVLB4_1p21.3c"; transcript_id "ERVLB4_1p21.3c"; locus "ERVLB4_1p21.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0049"; model_cov "1114"; model_pct "19.5"; chr1 rmsk exon 98773793 98774901 6098 + . gene_id "ERVLB4_1p21.3c"; transcript_id "ERVLB4_1p21.3c"; locus "ERVLB4_1p21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0049"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-50"; repStart "4550"; chr1 rmsk exon 98775553 98775877 675 + . gene_id "ERVLB4_1p21.3c"; transcript_id "ERVLB4_1p21.3c"; locus "ERVLB4_1p21.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0049"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "-53"; repStart "1"; ### HERVH_1p21.3b ### chr1 rmsk gene 98801055 98806858 . - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0048"; model_cov "5099"; model_pct "66.1"; chr1 rmsk exon 98801055 98801498 3152 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 98801499 98801874 2414 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 98801875 98802079 1369 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5614"; repStart "-1894"; chr1 rmsk exon 98802128 98802738 3075 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr1 rmsk exon 98802741 98803586 5605 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr1 rmsk exon 98803566 98806412 15070 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 98806415 98806858 3206 - . gene_id "HERVH_1p21.3b"; transcript_id "HERVH_1p21.3b"; locus "HERVH_1p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0048"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_1p21.3b ### chr1 rmsk gene 98942499 98944900 . + . gene_id "ERV316A3_1p21.3b"; transcript_id "ERV316A3_1p21.3b"; locus "ERV316A3_1p21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0082"; model_cov "1913"; model_pct "36.6"; chr1 rmsk exon 98942499 98942596 304 + . gene_id "ERV316A3_1p21.3b"; transcript_id "ERV316A3_1p21.3b"; locus "ERV316A3_1p21.3b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0082"; repClass "LTR"; repEnd "100"; repFamily "ERVL"; repLeft "-322"; repStart "1"; chr1 rmsk exon 98942604 98943789 3218 + . gene_id "ERV316A3_1p21.3b"; transcript_id "ERV316A3_1p21.3b"; locus "ERV316A3_1p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0082"; repClass "LTR"; repEnd "2218"; repFamily "ERVL"; repLeft "-3008"; repStart "1021"; chr1 rmsk exon 98943848 98944352 2665 + . gene_id "ERV316A3_1p21.3b"; transcript_id "ERV316A3_1p21.3b"; locus "ERV316A3_1p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0082"; repClass "LTR"; repEnd "2864"; repFamily "ERVL"; repLeft "-2362"; repStart "2368"; chr1 rmsk exon 98944674 98944900 2665 + . gene_id "ERV316A3_1p21.3b"; transcript_id "ERV316A3_1p21.3b"; locus "ERV316A3_1p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0082"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2865"; ### HERVH_1p21.2a ### chr1 rmsk gene 99509511 99515367 . + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0049"; model_cov "5056"; model_pct "65.6"; chr1 rmsk exon 99509511 99509963 3437 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 99509966 99513169 19088 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr1 rmsk exon 99513160 99513662 3105 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 99513665 99514322 4102 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr1 rmsk exon 99514327 99514544 1271 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 99514545 99514922 2397 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 99514923 99515367 3293 + . gene_id "HERVH_1p21.2a"; transcript_id "HERVH_1p21.2a"; locus "HERVH_1p21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0049"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_1p21.2 ### chr1 rmsk gene 99586738 99588780 . - . gene_id "MER41_1p21.2"; transcript_id "MER41_1p21.2"; locus "MER41_1p21.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0017"; model_cov "1394"; model_pct "23.4"; chr1 rmsk exon 99586738 99587259 3659 - . gene_id "MER41_1p21.2"; transcript_id "MER41_1p21.2"; locus "MER41_1p21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0017"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "3"; repStart "-87"; chr1 rmsk exon 99587262 99588546 9183 - . gene_id "MER41_1p21.2"; transcript_id "MER41_1p21.2"; locus "MER41_1p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0017"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4639"; repStart "0"; chr1 rmsk exon 99588542 99588631 392 - . gene_id "MER41_1p21.2"; transcript_id "MER41_1p21.2"; locus "MER41_1p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0017"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chr1 rmsk exon 99588632 99588780 1089 - . gene_id "MER41_1p21.2"; transcript_id "MER41_1p21.2"; locus "MER41_1p21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0017"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "485"; repStart "0"; ### MER34B_1p21.2a ### chr1 rmsk gene 99940845 99943100 . - . gene_id "MER34B_1p21.2a"; transcript_id "MER34B_1p21.2a"; locus "MER34B_1p21.2a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0014"; model_cov "1655"; model_pct "30.9"; chr1 rmsk exon 99940845 99941174 2440 - . gene_id "MER34B_1p21.2a"; transcript_id "MER34B_1p21.2a"; locus "MER34B_1p21.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0014"; repClass "LTR"; repEnd "3192"; repFamily "ERV1"; repLeft "2872"; repStart "-2164"; chr1 rmsk exon 99941483 99941937 2440 - . gene_id "MER34B_1p21.2a"; transcript_id "MER34B_1p21.2a"; locus "MER34B_1p21.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0014"; repClass "LTR"; repEnd "2871"; repFamily "ERV1"; repLeft "2414"; repStart "-2485"; chr1 rmsk exon 99942151 99942752 1501 - . gene_id "MER34B_1p21.2a"; transcript_id "MER34B_1p21.2a"; locus "MER34B_1p21.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0014"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "1632"; repStart "-2963"; chr1 rmsk exon 99942977 99943100 343 - . gene_id "MER34B_1p21.2a"; transcript_id "MER34B_1p21.2a"; locus "MER34B_1p21.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0014"; repClass "LTR"; repEnd "1931"; repFamily "ERV1"; repLeft "1814"; repStart "-3425"; ### ERVLB4_1p21.2a ### chr1 rmsk gene 100300279 100301346 . - . gene_id "ERVLB4_1p21.2a"; transcript_id "ERVLB4_1p21.2a"; locus "ERVLB4_1p21.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0052"; model_cov "974"; model_pct "17.0"; chr1 rmsk exon 100300279 100300562 476 - . gene_id "ERVLB4_1p21.2a"; transcript_id "ERVLB4_1p21.2a"; locus "ERVLB4_1p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0052"; repClass "LTR"; repEnd "5633"; repFamily "ERVL"; repLeft "5314"; repStart "-81"; chr1 rmsk exon 100300590 100300841 656 - . gene_id "ERVLB4_1p21.2a"; transcript_id "ERVLB4_1p21.2a"; locus "ERVLB4_1p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0052"; repClass "LTR"; repEnd "5244"; repFamily "ERVL"; repLeft "4988"; repStart "-470"; chr1 rmsk exon 100300968 100301346 926 - . gene_id "ERVLB4_1p21.2a"; transcript_id "ERVLB4_1p21.2a"; locus "ERVLB4_1p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0052"; repClass "LTR"; repEnd "4851"; repFamily "ERVL"; repLeft "4452"; repStart "-863"; ### ERVLE_1p21.2a ### chr1 rmsk gene 100302577 100303717 . + . gene_id "ERVLE_1p21.2a"; transcript_id "ERVLE_1p21.2a"; locus "ERVLE_1p21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0155"; model_cov "1212"; model_pct "21.4"; chr1 rmsk exon 100302577 100303717 3795 + . gene_id "ERVLE_1p21.2a"; transcript_id "ERVLE_1p21.2a"; locus "ERVLE_1p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0155"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-1234"; repStart "3221"; ### PRIMAX_1p21.2 ### chr1 rmsk gene 100561997 100564010 . - . gene_id "PRIMAX_1p21.2"; transcript_id "PRIMAX_1p21.2"; locus "PRIMAX_1p21.2"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0002"; model_cov "424"; model_pct "10.3"; chr1 rmsk exon 100561997 100562257 382 - . gene_id "PRIMAX_1p21.2"; transcript_id "PRIMAX_1p21.2"; locus "PRIMAX_1p21.2"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0002"; repClass "LTR"; repEnd "1743"; repFamily "ERV1"; repLeft "1481"; repStart "-2359"; chr1 rmsk exon 100563852 100564010 360 - . gene_id "PRIMAX_1p21.2"; transcript_id "PRIMAX_1p21.2"; locus "PRIMAX_1p21.2"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0002"; repClass "LTR"; repEnd "-1312"; repFamily "ERV1"; repLeft "-1474"; repStart "-5414"; ### ERV316A3_1p21.2a ### chr1 rmsk gene 100810360 100811157 . - . gene_id "ERV316A3_1p21.2a"; transcript_id "ERV316A3_1p21.2a"; locus "ERV316A3_1p21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0083"; model_cov "1112"; model_pct "21.3"; chr1 rmsk exon 100810360 100811157 1456 - . gene_id "ERV316A3_1p21.2a"; transcript_id "ERV316A3_1p21.2a"; locus "ERV316A3_1p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0083"; repClass "LTR"; repEnd "3801"; repFamily "ERVL"; repLeft "2689"; repStart "-1425"; ### ERV316A3_1p21.2b ### chr1 rmsk gene 101266391 101269155 . + . gene_id "ERV316A3_1p21.2b"; transcript_id "ERV316A3_1p21.2b"; locus "ERV316A3_1p21.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0084"; model_cov "2561"; model_pct "49.0"; chr1 rmsk exon 101266391 101266619 1143 + . gene_id "ERV316A3_1p21.2b"; transcript_id "ERV316A3_1p21.2b"; locus "ERV316A3_1p21.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0084"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "-57"; repStart "157"; chr1 rmsk exon 101266620 101266833 423 + . gene_id "ERV316A3_1p21.2b"; transcript_id "ERV316A3_1p21.2b"; locus "ERV316A3_1p21.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0084"; repClass "LTR"; repEnd "274"; repFamily "ERVL"; repLeft "-177"; repStart "1"; chr1 rmsk exon 101266845 101269155 3051 + . gene_id "ERV316A3_1p21.2b"; transcript_id "ERV316A3_1p21.2b"; locus "ERV316A3_1p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0084"; repClass "LTR"; repEnd "4367"; repFamily "ERVL"; repLeft "-859"; repStart "1806"; ### ERVLB4_1p21.2b ### chr1 rmsk gene 101336341 101339354 . + . gene_id "ERVLB4_1p21.2b"; transcript_id "ERVLB4_1p21.2b"; locus "ERVLB4_1p21.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0053"; model_cov "2325"; model_pct "40.7"; chr1 rmsk exon 101336341 101338525 11741 + . gene_id "ERVLB4_1p21.2b"; transcript_id "ERVLB4_1p21.2b"; locus "ERVLB4_1p21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0053"; repClass "LTR"; repEnd "2842"; repFamily "ERVL"; repLeft "-2872"; repStart "611"; chr1 rmsk exon 101339265 101339354 570 + . gene_id "ERVLB4_1p21.2b"; transcript_id "ERVLB4_1p21.2b"; locus "ERVLB4_1p21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0053"; repClass "LTR"; repEnd "2934"; repFamily "ERVL"; repLeft "-2780"; repStart "2840"; ### HERVL_1p21.2 ### chr1 rmsk gene 101359129 101362553 . - . gene_id "HERVL_1p21.2"; transcript_id "HERVL_1p21.2"; locus "HERVL_1p21.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0053"; model_cov "3005"; model_pct "53.1"; chr1 rmsk exon 101359129 101359565 3213 - . gene_id "HERVL_1p21.2"; transcript_id "HERVL_1p21.2"; locus "HERVL_1p21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0053"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 101359566 101362553 22181 - . gene_id "HERVL_1p21.2"; transcript_id "HERVL_1p21.2"; locus "HERVL_1p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0053"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2649"; repStart "0"; ### MER34B_1p21.2b ### chr1 rmsk gene 101494089 101495695 . + . gene_id "MER34B_1p21.2b"; transcript_id "MER34B_1p21.2b"; locus "MER34B_1p21.2b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0017"; model_cov "1333"; model_pct "24.9"; chr1 rmsk exon 101494089 101494101 3970 + . gene_id "MER34B_1p21.2b"; transcript_id "MER34B_1p21.2b"; locus "MER34B_1p21.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0017"; repClass "LTR"; repEnd "2012"; repFamily "ERV1"; repLeft "-3344"; repStart "2003"; chr1 rmsk exon 101494429 101495223 3970 + . gene_id "MER34B_1p21.2b"; transcript_id "MER34B_1p21.2b"; locus "MER34B_1p21.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0017"; repClass "LTR"; repEnd "3235"; repFamily "ERV1"; repLeft "-2121"; repStart "2354"; chr1 rmsk exon 101495298 101495695 3970 + . gene_id "MER34B_1p21.2b"; transcript_id "MER34B_1p21.2b"; locus "MER34B_1p21.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0017"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-1677"; repStart "3236"; ### MER34B_1p21.2c ### chr1 rmsk gene 101495982 101498022 . + . gene_id "MER34B_1p21.2c"; transcript_id "MER34B_1p21.2c"; locus "MER34B_1p21.2c"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0018"; model_cov "1478"; model_pct "27.6"; chr1 rmsk exon 101495982 101496181 3970 + . gene_id "MER34B_1p21.2c"; transcript_id "MER34B_1p21.2c"; locus "MER34B_1p21.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0018"; repClass "LTR"; repEnd "3459"; repFamily "ERV1"; repLeft "-1897"; repStart "3293"; chr1 rmsk exon 101496477 101496543 3970 + . gene_id "MER34B_1p21.2c"; transcript_id "MER34B_1p21.2c"; locus "MER34B_1p21.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0018"; repClass "LTR"; repEnd "3518"; repFamily "ERV1"; repLeft "-1838"; repStart "3460"; chr1 rmsk exon 101496845 101498022 3970 + . gene_id "MER34B_1p21.2c"; transcript_id "MER34B_1p21.2c"; locus "MER34B_1p21.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0018"; repClass "LTR"; repEnd "5114"; repFamily "ERV1"; repLeft "-242"; repStart "3860"; ### ERVLE_1p21.2b ### chr1 rmsk gene 101546698 101548684 . + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0157"; model_cov "1500"; model_pct "26.5"; chr1 rmsk exon 101546698 101546946 329 + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0157"; repClass "LTR"; repEnd "1843"; repFamily "ERVL"; repLeft "-3824"; repStart "1611"; chr1 rmsk exon 101546977 101547871 1628 + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0157"; repClass "LTR"; repEnd "3228"; repFamily "ERVL"; repLeft "-2439"; repStart "2291"; chr1 rmsk exon 101548338 101548430 250 + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0157"; repClass "LTR"; repEnd "3857"; repFamily "ERVL"; repLeft "-1810"; repStart "3765"; chr1 rmsk exon 101548450 101548608 367 + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0157"; repClass "LTR"; repEnd "4072"; repFamily "ERVL"; repLeft "-1595"; repStart "3889"; chr1 rmsk exon 101548628 101548684 289 + . gene_id "ERVLE_1p21.2b"; transcript_id "ERVLE_1p21.2b"; locus "ERVLE_1p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0157"; repClass "LTR"; repEnd "4176"; repFamily "ERVL"; repLeft "-1491"; repStart "4120"; ### HERVH_1p21.2b ### chr1 rmsk gene 101597230 101603442 . - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0050"; model_cov "5766"; model_pct "74.8"; chr1 rmsk exon 101597230 101597627 2537 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 101597628 101599558 14003 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "5769"; repStart "0"; chr1 rmsk exon 101599555 101599733 1321 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chr1 rmsk exon 101599738 101600240 3251 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "3492"; repStart "-3722"; chr1 rmsk exon 101600231 101600372 891 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 101600352 101603091 14496 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 101603095 101603442 2081 - . gene_id "HERVH_1p21.2b"; transcript_id "HERVH_1p21.2b"; locus "HERVH_1p21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0050"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### HERVFRD_1p21.1a ### chr1 rmsk gene 102045800 102048156 . + . gene_id "HERVFRD_1p21.1a"; transcript_id "HERVFRD_1p21.1a"; locus "HERVFRD_1p21.1a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0010"; model_cov "1111"; model_pct "15.4"; chr1 rmsk exon 102045800 102046068 1093 + . gene_id "HERVFRD_1p21.1a"; transcript_id "HERVFRD_1p21.1a"; locus "HERVFRD_1p21.1a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0010"; repClass "LTR"; repEnd "674"; repFamily "ERV1"; repLeft "-108"; repStart "385"; chr1 rmsk exon 102046168 102047205 5024 + . gene_id "HERVFRD_1p21.1a"; transcript_id "HERVFRD_1p21.1a"; locus "HERVFRD_1p21.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0010"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6086"; chr1 rmsk exon 102047206 102047666 3027 + . gene_id "HERVFRD_1p21.1a"; transcript_id "HERVFRD_1p21.1a"; locus "HERVFRD_1p21.1a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0010"; repClass "LTR"; repEnd "543"; repFamily "ERV1"; repLeft "-239"; repStart "1"; chr1 rmsk exon 102047989 102048156 3027 + . gene_id "HERVFRD_1p21.1a"; transcript_id "HERVFRD_1p21.1a"; locus "HERVFRD_1p21.1a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0010"; repClass "LTR"; repEnd "730"; repFamily "ERV1"; repLeft "-52"; repStart "544"; ### ERVLE_1p21.1a ### chr1 rmsk gene 102081694 102083522 . + . gene_id "ERVLE_1p21.1a"; transcript_id "ERVLE_1p21.1a"; locus "ERVLE_1p21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0159"; model_cov "1420"; model_pct "25.1"; chr1 rmsk exon 102081694 102082229 772 + . gene_id "ERVLE_1p21.1a"; transcript_id "ERVLE_1p21.1a"; locus "ERVLE_1p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0159"; repClass "LTR"; repEnd "3043"; repFamily "ERVL"; repLeft "-2624"; repStart "2517"; chr1 rmsk exon 102082682 102082804 271 + . gene_id "ERVLE_1p21.1a"; transcript_id "ERVLE_1p21.1a"; locus "ERVLE_1p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0159"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3653"; chr1 rmsk exon 102082988 102083522 688 + . gene_id "ERVLE_1p21.1a"; transcript_id "ERVLE_1p21.1a"; locus "ERVLE_1p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0159"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "-1313"; repStart "3574"; ### HERVI_1p21.1 ### chr1 rmsk gene 102085730 102092888 . - . gene_id "HERVI_1p21.1"; transcript_id "HERVI_1p21.1"; locus "HERVI_1p21.1"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0001"; model_cov "6491"; model_pct "83.4"; chr1 rmsk exon 102085730 102086237 2040 - . gene_id "HERVI_1p21.1"; transcript_id "HERVI_1p21.1"; locus "HERVI_1p21.1"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0001"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 102086264 102092788 31126 - . gene_id "HERVI_1p21.1"; transcript_id "HERVI_1p21.1"; locus "HERVI_1p21.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0001"; repClass "LTR"; repEnd "7761"; repFamily "ERV1"; repLeft "1270"; repStart "-24"; chr1 rmsk exon 102092811 102092888 247 - . gene_id "HERVI_1p21.1"; transcript_id "HERVI_1p21.1"; locus "HERVI_1p21.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0001"; repClass "LTR"; repEnd "78"; repFamily "ERV1"; repLeft "1"; repStart "-469"; ### HUERSP1_1p21.1 ### chr1 rmsk gene 102094498 102097939 . + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0009"; model_cov "1646"; model_pct "26.3"; chr1 rmsk exon 102094498 102095245 3179 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 102095246 102095537 1681 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "293"; repFamily "ERV1"; repLeft "-5970"; repStart "1"; chr1 rmsk exon 102095767 102095861 3892 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "1225"; repFamily "ERV1"; repLeft "-5038"; repStart "1131"; chr1 rmsk exon 102095915 102096596 3892 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "1930"; repFamily "ERV1"; repLeft "-4333"; repStart "1226"; chr1 rmsk exon 102096645 102097263 3102 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5707"; chr1 rmsk exon 102097264 102097939 2965 + . gene_id "HUERSP1_1p21.1"; transcript_id "HUERSP1_1p21.1"; locus "HUERSP1_1p21.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0009"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_1p21.1 ### chr1 rmsk gene 102102624 102104200 . + . gene_id "MER4_1p21.1"; transcript_id "MER4_1p21.1"; locus "MER4_1p21.1"; category "internal"; intModel "MER4-int"; locid "MER4-int_0030"; model_cov "1318"; model_pct "20.0"; chr1 rmsk exon 102102624 102102698 554 + . gene_id "MER4_1p21.1"; transcript_id "MER4_1p21.1"; locus "MER4_1p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0030"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "613"; chr1 rmsk exon 102102730 102102970 1413 + . gene_id "MER4_1p21.1"; transcript_id "MER4_1p21.1"; locus "MER4_1p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0030"; repClass "LTR"; repEnd "1029"; repFamily "ERV1"; repLeft "-5569"; repStart "782"; chr1 rmsk exon 102102988 102103717 4041 + . gene_id "MER4_1p21.1"; transcript_id "MER4_1p21.1"; locus "MER4_1p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0030"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr1 rmsk exon 102103941 102104200 1354 + . gene_id "MER4_1p21.1"; transcript_id "MER4_1p21.1"; locus "MER4_1p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0030"; repClass "LTR"; repEnd "3003"; repFamily "ERV1"; repLeft "-3595"; repStart "2737"; ### ERV316A3_1p21.1a ### chr1 rmsk gene 102173844 102176687 . - . gene_id "ERV316A3_1p21.1a"; transcript_id "ERV316A3_1p21.1a"; locus "ERV316A3_1p21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0086"; model_cov "1021"; model_pct "19.5"; chr1 rmsk exon 102173844 102174243 1102 - . gene_id "ERV316A3_1p21.1a"; transcript_id "ERV316A3_1p21.1a"; locus "ERV316A3_1p21.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0086"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr1 rmsk exon 102174288 102174984 1805 - . gene_id "ERV316A3_1p21.1a"; transcript_id "ERV316A3_1p21.1a"; locus "ERV316A3_1p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0086"; repClass "LTR"; repEnd "5166"; repFamily "ERVL"; repLeft "4468"; repStart "-60"; chr1 rmsk exon 102176363 102176687 575 - . gene_id "ERV316A3_1p21.1a"; transcript_id "ERV316A3_1p21.1a"; locus "ERV316A3_1p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0086"; repClass "LTR"; repEnd "2532"; repFamily "ERVL"; repLeft "2209"; repStart "-2694"; ### ERV316A3_1p21.1b ### chr1 rmsk gene 102399420 102400310 . + . gene_id "ERV316A3_1p21.1b"; transcript_id "ERV316A3_1p21.1b"; locus "ERV316A3_1p21.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0087"; model_cov "863"; model_pct "16.5"; chr1 rmsk exon 102399420 102399997 1044 + . gene_id "ERV316A3_1p21.1b"; transcript_id "ERV316A3_1p21.1b"; locus "ERV316A3_1p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0087"; repClass "LTR"; repEnd "2351"; repFamily "ERVL"; repLeft "-2875"; repStart "1770"; chr1 rmsk exon 102400025 102400310 668 + . gene_id "ERV316A3_1p21.1b"; transcript_id "ERV316A3_1p21.1b"; locus "ERV316A3_1p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0087"; repClass "LTR"; repEnd "2755"; repFamily "ERVL"; repLeft "-2471"; repStart "2473"; ### HUERSP3_1p21.1 ### chr1 rmsk gene 102434038 102440675 . + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0007"; model_cov "5699"; model_pct "63.9"; chr1 rmsk exon 102434038 102434100 436 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "63"; repFamily "ERV1"; repLeft "-549"; repStart "1"; chr1 rmsk exon 102434101 102434886 6898 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "1010"; repFamily "ERV1"; repLeft "-7909"; repStart "255"; chr1 rmsk exon 102435189 102435693 6898 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "1517"; repFamily "ERV1"; repLeft "-7402"; repStart "1011"; chr1 rmsk exon 102435696 102438079 16011 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "6655"; repFamily "ERV1"; repLeft "-2264"; repStart "4234"; chr1 rmsk exon 102438073 102440075 12666 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "8905"; repFamily "ERV1"; repLeft "-14"; repStart "6888"; chr1 rmsk exon 102440089 102440675 3667 + . gene_id "HUERSP3_1p21.1"; transcript_id "HUERSP3_1p21.1"; locus "HUERSP3_1p21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0007"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p21.1b ### chr1 rmsk gene 102518368 102520339 . - . gene_id "ERVLE_1p21.1b"; transcript_id "ERVLE_1p21.1b"; locus "ERVLE_1p21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0160"; model_cov "1672"; model_pct "29.5"; chr1 rmsk exon 102518368 102518740 811 - . gene_id "ERVLE_1p21.1b"; transcript_id "ERVLE_1p21.1b"; locus "ERVLE_1p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0160"; repClass "LTR"; repEnd "2573"; repFamily "ERVL"; repLeft "2185"; repStart "-3094"; chr1 rmsk exon 102518936 102519953 885 - . gene_id "ERVLE_1p21.1b"; transcript_id "ERVLE_1p21.1b"; locus "ERVLE_1p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0160"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "886"; repStart "-3735"; chr1 rmsk exon 102520107 102520339 302 - . gene_id "ERVLE_1p21.1b"; transcript_id "ERVLE_1p21.1b"; locus "ERVLE_1p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0160"; repClass "LTR"; repEnd "702"; repFamily "ERVL"; repLeft "464"; repStart "-4965"; ### HERVL_1p21.1a ### chr1 rmsk gene 102556946 102557990 . - . gene_id "HERVL_1p21.1a"; transcript_id "HERVL_1p21.1a"; locus "HERVL_1p21.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0054"; model_cov "728"; model_pct "12.9"; chr1 rmsk exon 102556946 102557284 2306 - . gene_id "HERVL_1p21.1a"; transcript_id "HERVL_1p21.1a"; locus "HERVL_1p21.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0054"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "1"; repStart "-106"; chr1 rmsk exon 102557285 102557990 5290 - . gene_id "HERVL_1p21.1a"; transcript_id "HERVL_1p21.1a"; locus "HERVL_1p21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0054"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4926"; repStart "0"; ### HML6_1p21.1a ### chr1 rmsk gene 102833274 102841221 . + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0001"; model_cov "6340"; model_pct "88.0"; chr1 rmsk exon 102833274 102833703 3124 + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0001"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr1 rmsk exon 102833712 102835940 14529 + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0001"; repClass "LTR"; repEnd "2228"; repFamily "ERVK"; repLeft "-4974"; repStart "1"; chr1 rmsk exon 102836750 102837131 2670 + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0001"; repClass "LTR"; repEnd "2635"; repFamily "ERVK"; repLeft "-4567"; repStart "2227"; chr1 rmsk exon 102837116 102840789 25067 + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0001"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "3495"; chr1 rmsk exon 102840792 102841221 2852 + . gene_id "HML6_1p21.1a"; transcript_id "HML6_1p21.1a"; locus "HML6_1p21.1a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0001"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "-1"; repStart "1"; ### ERV316A3_1p21.1c ### chr1 rmsk gene 103125340 103130310 . - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0088"; model_cov "3130"; model_pct "59.9"; chr1 rmsk exon 103125340 103125980 1668 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "4429"; repFamily "ERVL"; repLeft "3752"; repStart "-797"; chr1 rmsk exon 103125994 103126769 2315 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "3052"; repFamily "ERVL"; repLeft "2298"; repStart "-2174"; chr1 rmsk exon 103126834 103127151 705 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "2521"; repFamily "ERVL"; repLeft "2191"; repStart "-2705"; chr1 rmsk exon 103127185 103127635 573 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "2054"; repFamily "ERVL"; repLeft "1540"; repStart "-3172"; chr1 rmsk exon 103129134 103129437 972 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "1555"; repFamily "ERVL"; repLeft "1244"; repStart "-3671"; chr1 rmsk exon 103129488 103130031 1179 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "545"; repFamily "ERVL"; repLeft "1"; repStart "-4681"; chr1 rmsk exon 103130042 103130310 749 - . gene_id "ERV316A3_1p21.1c"; transcript_id "ERV316A3_1p21.1c"; locus "ERV316A3_1p21.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0088"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "163"; repStart "-5"; ### HERVL_1p21.1b ### chr1 rmsk gene 103266759 103273207 . + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0056"; model_cov "5535"; model_pct "97.9"; chr1 rmsk exon 103266759 103267219 2952 + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0056"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 103267223 103272220 38872 + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0056"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-632"; repStart "2"; chr1 rmsk exon 103272225 103272738 3749 + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0056"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-8"; repStart "5131"; chr1 rmsk exon 103272746 103273141 3280 + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0056"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-47"; repStart "1"; chr1 rmsk exon 103273169 103273207 3280 + . gene_id "HERVL_1p21.1b"; transcript_id "HERVL_1p21.1b"; locus "HERVL_1p21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0056"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "398"; ### ERV316A3_1p21.1d ### chr1 rmsk gene 103473582 103475049 . - . gene_id "ERV316A3_1p21.1d"; transcript_id "ERV316A3_1p21.1d"; locus "ERV316A3_1p21.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0091"; model_cov "732"; model_pct "14.0"; chr1 rmsk exon 103473582 103473790 571 - . gene_id "ERV316A3_1p21.1d"; transcript_id "ERV316A3_1p21.1d"; locus "ERV316A3_1p21.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0091"; repClass "LTR"; repEnd "221"; repFamily "ERVL"; repLeft "1"; repStart "-217"; chr1 rmsk exon 103474318 103474534 300 - . gene_id "ERV316A3_1p21.1d"; transcript_id "ERV316A3_1p21.1d"; locus "ERV316A3_1p21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0091"; repClass "LTR"; repEnd "4434"; repFamily "ERVL"; repLeft "4204"; repStart "-792"; chr1 rmsk exon 103474544 103475049 1173 - . gene_id "ERV316A3_1p21.1d"; transcript_id "ERV316A3_1p21.1d"; locus "ERV316A3_1p21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0091"; repClass "LTR"; repEnd "2069"; repFamily "ERVL"; repLeft "1567"; repStart "-3157"; ### MER61_1p21.1a ### chr1 rmsk gene 103589770 103593933 . - . gene_id "MER61_1p21.1a"; transcript_id "MER61_1p21.1a"; locus "MER61_1p21.1a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0010"; model_cov "4465"; model_pct "85.6"; chr1 rmsk exon 103589770 103590331 13165 - . gene_id "MER61_1p21.1a"; transcript_id "MER61_1p21.1a"; locus "MER61_1p21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0010"; repClass "LTR"; repEnd "3990"; repFamily "ERV1"; repLeft "3714"; repStart "-1227"; chr1 rmsk exon 103590684 103593933 13165 - . gene_id "MER61_1p21.1a"; transcript_id "MER61_1p21.1a"; locus "MER61_1p21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0010"; repClass "LTR"; repEnd "2822"; repFamily "ERV1"; repLeft "-1367"; repStart "-2395"; ### LTR25_1p21.1a ### chr1 rmsk gene 103594610 103595674 . - . gene_id "LTR25_1p21.1a"; transcript_id "LTR25_1p21.1a"; locus "LTR25_1p21.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0003"; model_cov "1104"; model_pct "15.4"; chr1 rmsk exon 103594610 103595674 3552 - . gene_id "LTR25_1p21.1a"; transcript_id "LTR25_1p21.1a"; locus "LTR25_1p21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0003"; repClass "LTR"; repEnd "1728"; repFamily "ERV1"; repLeft "624"; repStart "-5460"; ### MER61_1p21.1b ### chr1 rmsk gene 103625858 103628713 . - . gene_id "MER61_1p21.1b"; transcript_id "MER61_1p21.1b"; locus "MER61_1p21.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0011"; model_cov "3060"; model_pct "58.7"; chr1 rmsk exon 103625858 103626272 1230 - . gene_id "MER61_1p21.1b"; transcript_id "MER61_1p21.1b"; locus "MER61_1p21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0011"; repClass "LTR"; repEnd "2353"; repFamily "ERV1"; repLeft "2081"; repStart "-2864"; chr1 rmsk exon 103626338 103627949 5093 - . gene_id "MER61_1p21.1b"; transcript_id "MER61_1p21.1b"; locus "MER61_1p21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0011"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-1592"; repStart "-4774"; chr1 rmsk exon 103627956 103628713 3467 - . gene_id "MER61_1p21.1b"; transcript_id "MER61_1p21.1b"; locus "MER61_1p21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0011"; repClass "LTR"; repEnd "-594"; repFamily "ERV1"; repLeft "-1347"; repStart "-5811"; ### HERVEA_1p21.1a ### chr1 rmsk gene 103647685 103655525 . - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0002"; model_cov "6725"; model_pct "85.7"; chr1 rmsk exon 103647685 103648153 3220 - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0002"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 103648516 103652042 18889 - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0002"; repClass "LTR"; repEnd "7405"; repFamily "ERV1"; repLeft "3834"; repStart "-442"; chr1 rmsk exon 103652053 103654730 12210 - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0002"; repClass "LTR"; repEnd "3580"; repFamily "ERV1"; repLeft "767"; repStart "-4267"; chr1 rmsk exon 103654727 103655076 2043 - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0002"; repClass "LTR"; repEnd "1293"; repFamily "ERV1"; repLeft "952"; repStart "-6554"; chr1 rmsk exon 103655077 103655525 3043 - . gene_id "HERVEA_1p21.1a"; transcript_id "HERVEA_1p21.1a"; locus "HERVEA_1p21.1a"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0002"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_1p21.1c ### chr1 rmsk gene 103664632 103666408 . - . gene_id "MER61_1p21.1c"; transcript_id "MER61_1p21.1c"; locus "MER61_1p21.1c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0012"; model_cov "2976"; model_pct "57.0"; chr1 rmsk exon 103664632 103666408 5679 - . gene_id "MER61_1p21.1c"; transcript_id "MER61_1p21.1c"; locus "MER61_1p21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0012"; repClass "LTR"; repEnd "986"; repFamily "ERV1"; repLeft "-1990"; repStart "-4231"; ### LTR25_1p21.1b ### chr1 rmsk gene 103667091 103667870 . - . gene_id "LTR25_1p21.1b"; transcript_id "LTR25_1p21.1b"; locus "LTR25_1p21.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0005"; model_cov "820"; model_pct "11.4"; chr1 rmsk exon 103667091 103667870 3200 - . gene_id "LTR25_1p21.1b"; transcript_id "LTR25_1p21.1b"; locus "LTR25_1p21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0005"; repClass "LTR"; repEnd "1728"; repFamily "ERV1"; repLeft "908"; repStart "-5460"; ### LTR25_1p21.1c ### chr1 rmsk gene 103683814 103684878 . + . gene_id "LTR25_1p21.1c"; transcript_id "LTR25_1p21.1c"; locus "LTR25_1p21.1c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0006"; model_cov "1104"; model_pct "15.4"; chr1 rmsk exon 103683814 103684878 3540 + . gene_id "LTR25_1p21.1c"; transcript_id "LTR25_1p21.1c"; locus "LTR25_1p21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0006"; repClass "LTR"; repEnd "1728"; repFamily "ERV1"; repLeft "-5460"; repStart "624"; ### MER61_1p21.1d ### chr1 rmsk gene 103685561 103687337 . + . gene_id "MER61_1p21.1d"; transcript_id "MER61_1p21.1d"; locus "MER61_1p21.1d"; category "internal"; intModel "MER61-int"; locid "MER61-int_0013"; model_cov "2035"; model_pct "39.0"; chr1 rmsk exon 103685561 103687337 5679 + . gene_id "MER61_1p21.1d"; transcript_id "MER61_1p21.1d"; locus "MER61_1p21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0013"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-4774"; repStart "-1592"; ### HERVEA_1p21.1b ### chr1 rmsk gene 103696445 103704285 . + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0003"; model_cov "6725"; model_pct "85.7"; chr1 rmsk exon 103696445 103696893 3024 + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0003"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 103696894 103697243 2034 + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0003"; repClass "LTR"; repEnd "1293"; repFamily "ERV1"; repLeft "-6554"; repStart "952"; chr1 rmsk exon 103697240 103699917 12200 + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0003"; repClass "LTR"; repEnd "3580"; repFamily "ERV1"; repLeft "-4267"; repStart "767"; chr1 rmsk exon 103699928 103703454 18865 + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0003"; repClass "LTR"; repEnd "7405"; repFamily "ERV1"; repLeft "-442"; repStart "3834"; chr1 rmsk exon 103703817 103704285 3220 + . gene_id "HERVEA_1p21.1b"; transcript_id "HERVEA_1p21.1b"; locus "HERVEA_1p21.1b"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0003"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_1p21.1e ### chr1 rmsk gene 103719983 103722838 . - . gene_id "MER61_1p21.1e"; transcript_id "MER61_1p21.1e"; locus "MER61_1p21.1e"; category "internal"; intModel "MER61-int"; locid "MER61-int_0014"; model_cov "3060"; model_pct "58.7"; chr1 rmsk exon 103719983 103720397 1230 - . gene_id "MER61_1p21.1e"; transcript_id "MER61_1p21.1e"; locus "MER61_1p21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0014"; repClass "LTR"; repEnd "2353"; repFamily "ERV1"; repLeft "2081"; repStart "-2864"; chr1 rmsk exon 103720463 103722074 5093 - . gene_id "MER61_1p21.1e"; transcript_id "MER61_1p21.1e"; locus "MER61_1p21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0014"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-1592"; repStart "-4774"; chr1 rmsk exon 103722081 103722838 3472 - . gene_id "MER61_1p21.1e"; transcript_id "MER61_1p21.1e"; locus "MER61_1p21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0014"; repClass "LTR"; repEnd "-594"; repFamily "ERV1"; repLeft "-1347"; repStart "-5811"; ### HERVEA_1p21.1c ### chr1 rmsk gene 103741823 103749663 . - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0004"; model_cov "6725"; model_pct "85.7"; chr1 rmsk exon 103741823 103742291 3220 - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0004"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 103742654 103746180 18912 - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0004"; repClass "LTR"; repEnd "7405"; repFamily "ERV1"; repLeft "3834"; repStart "-442"; chr1 rmsk exon 103746191 103748868 12171 - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0004"; repClass "LTR"; repEnd "3580"; repFamily "ERV1"; repLeft "767"; repStart "-4267"; chr1 rmsk exon 103748865 103749214 2043 - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0004"; repClass "LTR"; repEnd "1293"; repFamily "ERV1"; repLeft "952"; repStart "-6554"; chr1 rmsk exon 103749215 103749663 3025 - . gene_id "HERVEA_1p21.1c"; transcript_id "HERVEA_1p21.1c"; locus "HERVEA_1p21.1c"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0004"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_1p21.1f ### chr1 rmsk gene 103758770 103760546 . - . gene_id "MER61_1p21.1f"; transcript_id "MER61_1p21.1f"; locus "MER61_1p21.1f"; category "internal"; intModel "MER61-int"; locid "MER61-int_0015"; model_cov "2976"; model_pct "57.0"; chr1 rmsk exon 103758770 103760546 5679 - . gene_id "MER61_1p21.1f"; transcript_id "MER61_1p21.1f"; locus "MER61_1p21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0015"; repClass "LTR"; repEnd "986"; repFamily "ERV1"; repLeft "-1990"; repStart "-4231"; ### LTR25_1p21.1d ### chr1 rmsk gene 103761207 103762332 . - . gene_id "LTR25_1p21.1d"; transcript_id "LTR25_1p21.1d"; locus "LTR25_1p21.1d"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0009"; model_cov "1142"; model_pct "15.9"; chr1 rmsk exon 103761207 103762332 4290 - . gene_id "LTR25_1p21.1d"; transcript_id "LTR25_1p21.1d"; locus "LTR25_1p21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0009"; repClass "LTR"; repEnd "1766"; repFamily "ERV1"; repLeft "624"; repStart "-5422"; ### HERVFRD_1p21.1b ### chr1 rmsk gene 104135713 104137735 . + . gene_id "HERVFRD_1p21.1b"; transcript_id "HERVFRD_1p21.1b"; locus "HERVFRD_1p21.1b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0011"; model_cov "1545"; model_pct "21.4"; chr1 rmsk exon 104135713 104136184 3724 + . gene_id "HERVFRD_1p21.1b"; transcript_id "HERVFRD_1p21.1b"; locus "HERVFRD_1p21.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0011"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "237"; chr1 rmsk exon 104136268 104137735 6904 + . gene_id "HERVFRD_1p21.1b"; transcript_id "HERVFRD_1p21.1b"; locus "HERVFRD_1p21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0011"; repClass "LTR"; repEnd "1546"; repFamily "ERV1"; repLeft "-5659"; repStart "1"; ### ERV316A3_1p21.1e ### chr1 rmsk gene 104236130 104236966 . - . gene_id "ERV316A3_1p21.1e"; transcript_id "ERV316A3_1p21.1e"; locus "ERV316A3_1p21.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0093"; model_cov "820"; model_pct "15.7"; chr1 rmsk exon 104236130 104236542 810 - . gene_id "ERV316A3_1p21.1e"; transcript_id "ERV316A3_1p21.1e"; locus "ERV316A3_1p21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0093"; repClass "LTR"; repEnd "1573"; repFamily "ERVL"; repLeft "1153"; repStart "-3653"; chr1 rmsk exon 104236584 104236966 713 - . gene_id "ERV316A3_1p21.1e"; transcript_id "ERV316A3_1p21.1e"; locus "ERV316A3_1p21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0093"; repClass "LTR"; repEnd "496"; repFamily "ERVL"; repLeft "96"; repStart "-4730"; ### HERVH_1p21.1a ### chr1 rmsk gene 104380123 104388639 . + . gene_id "HERVH_1p21.1a"; transcript_id "HERVH_1p21.1a"; locus "HERVH_1p21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0051"; model_cov "7712"; model_pct "100.0"; chr1 rmsk exon 104380123 104380544 2562 + . gene_id "HERVH_1p21.1a"; transcript_id "HERVH_1p21.1a"; locus "HERVH_1p21.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0051"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 104380545 104388205 34688 + . gene_id "HERVH_1p21.1a"; transcript_id "HERVH_1p21.1a"; locus "HERVH_1p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0051"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 104388206 104388639 2423 + . gene_id "HERVH_1p21.1a"; transcript_id "HERVH_1p21.1a"; locus "HERVH_1p21.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0051"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "31"; ### ERVLE_1p21.1c ### chr1 rmsk gene 104439378 104441252 . - . gene_id "ERVLE_1p21.1c"; transcript_id "ERVLE_1p21.1c"; locus "ERVLE_1p21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0164"; model_cov "1934"; model_pct "34.1"; chr1 rmsk exon 104439378 104441252 1758 - . gene_id "ERVLE_1p21.1c"; transcript_id "ERVLE_1p21.1c"; locus "ERVLE_1p21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0164"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "3127"; repStart "-606"; ### HERVEA_1p21.1d ### chr1 rmsk gene 104459780 104468646 . - . gene_id "HERVEA_1p21.1d"; transcript_id "HERVEA_1p21.1d"; locus "HERVEA_1p21.1d"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0005"; model_cov "7846"; model_pct "100.0"; chr1 rmsk exon 104459780 104460225 1887 - . gene_id "HERVEA_1p21.1d"; transcript_id "HERVEA_1p21.1d"; locus "HERVEA_1p21.1d"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0005"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 104460226 104468198 43827 - . gene_id "HERVEA_1p21.1d"; transcript_id "HERVEA_1p21.1d"; locus "HERVEA_1p21.1d"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0005"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 104468199 104468646 1969 - . gene_id "HERVEA_1p21.1d"; transcript_id "HERVEA_1p21.1d"; locus "HERVEA_1p21.1d"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0005"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_1p21.1a ### chr1 rmsk gene 104470603 104474802 . + . gene_id "ERVLB4_1p21.1a"; transcript_id "ERVLB4_1p21.1a"; locus "ERVLB4_1p21.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0056"; model_cov "3219"; model_pct "56.3"; chr1 rmsk exon 104470603 104470818 852 + . gene_id "ERVLB4_1p21.1a"; transcript_id "ERVLB4_1p21.1a"; locus "ERVLB4_1p21.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0056"; repClass "LTR"; repEnd "235"; repFamily "ERVL"; repLeft "-285"; repStart "1"; chr1 rmsk exon 104470862 104473858 15247 + . gene_id "ERVLB4_1p21.1a"; transcript_id "ERVLB4_1p21.1a"; locus "ERVLB4_1p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0056"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "-186"; repStart "2494"; chr1 rmsk exon 104474160 104474348 13216 + . gene_id "ERVLB4_1p21.1a"; transcript_id "ERVLB4_1p21.1a"; locus "ERVLB4_1p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0056"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5529"; chr1 rmsk exon 104474349 104474802 1503 + . gene_id "ERVLB4_1p21.1a"; transcript_id "ERVLB4_1p21.1a"; locus "ERVLB4_1p21.1a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0056"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "-10"; repStart "1"; ### ERVLE_1p21.1d ### chr1 rmsk gene 104477690 104479245 . - . gene_id "ERVLE_1p21.1d"; transcript_id "ERVLE_1p21.1d"; locus "ERVLE_1p21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0165"; model_cov "983"; model_pct "17.3"; chr1 rmsk exon 104477690 104478387 905 - . gene_id "ERVLE_1p21.1d"; transcript_id "ERVLE_1p21.1d"; locus "ERVLE_1p21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0165"; repClass "LTR"; repEnd "3916"; repFamily "ERVL"; repLeft "3184"; repStart "-1751"; chr1 rmsk exon 104479001 104479245 379 - . gene_id "ERVLE_1p21.1d"; transcript_id "ERVLE_1p21.1d"; locus "ERVLE_1p21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0165"; repClass "LTR"; repEnd "2864"; repFamily "ERVL"; repLeft "2613"; repStart "-2803"; ### HERVL_1p21.1c ### chr1 rmsk gene 104555600 104562197 . + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0057"; model_cov "5472"; model_pct "96.8"; chr1 rmsk exon 104555600 104555993 2739 + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0057"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr1 rmsk exon 104556354 104556412 302 + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0057"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "380"; chr1 rmsk exon 104556415 104558678 12290 + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0057"; repClass "LTR"; repEnd "2350"; repFamily "ERVL"; repLeft "-3304"; repStart "2"; chr1 rmsk exon 104558679 104561793 23297 + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0057"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2530"; chr1 rmsk exon 104561794 104562197 2948 + . gene_id "HERVL_1p21.1c"; transcript_id "HERVL_1p21.1c"; locus "HERVL_1p21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0057"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### HERVL_1p21.1d ### chr1 rmsk gene 104578064 104582892 . - . gene_id "HERVL_1p21.1d"; transcript_id "HERVL_1p21.1d"; locus "HERVL_1p21.1d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0058"; model_cov "4167"; model_pct "73.7"; chr1 rmsk exon 104578064 104578270 30116 - . gene_id "HERVL_1p21.1d"; transcript_id "HERVL_1p21.1d"; locus "HERVL_1p21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0058"; repClass "LTR"; repEnd "4175"; repFamily "ERVL"; repLeft "3964"; repStart "-1479"; chr1 rmsk exon 104578578 104582127 30116 - . gene_id "HERVL_1p21.1d"; transcript_id "HERVL_1p21.1d"; locus "HERVL_1p21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0058"; repClass "LTR"; repEnd "3963"; repFamily "ERVL"; repLeft "468"; repStart "-1691"; chr1 rmsk exon 104582425 104582892 30116 - . gene_id "HERVL_1p21.1d"; transcript_id "HERVL_1p21.1d"; locus "HERVL_1p21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0058"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "6"; repStart "-5187"; ### HERVH_1p21.1b ### chr1 rmsk gene 104596936 104602769 . + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0053"; model_cov "5579"; model_pct "72.3"; chr1 rmsk exon 104596936 104597065 811 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "-344"; repStart "1"; chr1 rmsk exon 104597073 104599378 13314 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "397"; chr1 rmsk exon 104599375 104601416 12265 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3140"; chr1 rmsk exon 104601408 104601833 2456 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr1 rmsk exon 104601827 104602390 3771 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 104602391 104602769 1857 + . gene_id "HERVH_1p21.1b"; transcript_id "HERVH_1p21.1b"; locus "HERVH_1p21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0053"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML6_1p21.1b ### chr1 rmsk gene 104732541 104733885 . + . gene_id "HML6_1p21.1b"; transcript_id "HML6_1p21.1b"; locus "HML6_1p21.1b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0002"; model_cov "883"; model_pct "12.3"; chr1 rmsk exon 104732541 104732866 1757 + . gene_id "HML6_1p21.1b"; transcript_id "HML6_1p21.1b"; locus "HML6_1p21.1b"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0002"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "159"; chr1 rmsk exon 104732907 104733108 668 + . gene_id "HML6_1p21.1b"; transcript_id "HML6_1p21.1b"; locus "HML6_1p21.1b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0002"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "17"; chr1 rmsk exon 104733254 104733591 1483 + . gene_id "HML6_1p21.1b"; transcript_id "HML6_1p21.1b"; locus "HML6_1p21.1b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0002"; repClass "LTR"; repEnd "1640"; repFamily "ERVK"; repLeft "-5562"; repStart "1280"; chr1 rmsk exon 104733591 104733885 1580 + . gene_id "HML6_1p21.1b"; transcript_id "HML6_1p21.1b"; locus "HML6_1p21.1b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0002"; repClass "LTR"; repEnd "2110"; repFamily "ERVK"; repLeft "-5092"; repStart "1802"; ### ERV316A3_1p21.1f ### chr1 rmsk gene 104795005 104799851 . + . gene_id "ERV316A3_1p21.1f"; transcript_id "ERV316A3_1p21.1f"; locus "ERV316A3_1p21.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0096"; model_cov "2158"; model_pct "41.3"; chr1 rmsk exon 104795005 104795337 596 + . gene_id "ERV316A3_1p21.1f"; transcript_id "ERV316A3_1p21.1f"; locus "ERV316A3_1p21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0096"; repClass "LTR"; repEnd "617"; repFamily "ERVL"; repLeft "-4609"; repStart "268"; chr1 rmsk exon 104797378 104798552 1683 + . gene_id "ERV316A3_1p21.1f"; transcript_id "ERV316A3_1p21.1f"; locus "ERV316A3_1p21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0096"; repClass "LTR"; repEnd "2105"; repFamily "ERVL"; repLeft "-3121"; repStart "931"; chr1 rmsk exon 104799204 104799851 431 + . gene_id "ERV316A3_1p21.1f"; transcript_id "ERV316A3_1p21.1f"; locus "ERV316A3_1p21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0096"; repClass "LTR"; repEnd "4700"; repFamily "ERVL"; repLeft "-526"; repStart "4065"; ### ERVL_1p21.1a ### chr1 rmsk gene 104881671 104882757 . + . gene_id "ERVL_1p21.1a"; transcript_id "ERVL_1p21.1a"; locus "ERVL_1p21.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0014"; model_cov "1093"; model_pct "19.0"; chr1 rmsk exon 104881671 104882757 3437 + . gene_id "ERVL_1p21.1a"; transcript_id "ERVL_1p21.1a"; locus "ERVL_1p21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0014"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4664"; ### ERV316A3_1p21.1g ### chr1 rmsk gene 104979096 104981009 . - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0097"; model_cov "1316"; model_pct "25.2"; chr1 rmsk exon 104979096 104979172 1094 - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0097"; repClass "LTR"; repEnd "2658"; repFamily "ERVL"; repLeft "2593"; repStart "-2568"; chr1 rmsk exon 104979479 104979949 1094 - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0097"; repClass "LTR"; repEnd "2592"; repFamily "ERVL"; repLeft "2164"; repStart "-2634"; chr1 rmsk exon 104979925 104980617 900 - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0097"; repClass "LTR"; repEnd "2644"; repFamily "ERVL"; repLeft "1942"; repStart "-2582"; chr1 rmsk exon 104980618 104980739 406 - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0097"; repClass "LTR"; repEnd "1283"; repFamily "ERVL"; repLeft "1162"; repStart "-3943"; chr1 rmsk exon 104980759 104981009 272 - . gene_id "ERV316A3_1p21.1g"; transcript_id "ERV316A3_1p21.1g"; locus "ERV316A3_1p21.1g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0097"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "1"; repStart "-151"; ### HERVL18_1p21.1 ### chr1 rmsk gene 105137476 105138540 . - . gene_id "HERVL18_1p21.1"; transcript_id "HERVL18_1p21.1"; locus "HERVL18_1p21.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0006"; model_cov "673"; model_pct "11.1"; chr1 rmsk exon 105137476 105137688 754 - . gene_id "HERVL18_1p21.1"; transcript_id "HERVL18_1p21.1"; locus "HERVL18_1p21.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0006"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-64"; repStart "-13"; chr1 rmsk exon 105137820 105138492 3500 - . gene_id "HERVL18_1p21.1"; transcript_id "HERVL18_1p21.1"; locus "HERVL18_1p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0006"; repClass "LTR"; repEnd "676"; repFamily "ERVL"; repLeft "3"; repStart "-5371"; chr1 rmsk exon 105138502 105138540 227 - . gene_id "HERVL18_1p21.1"; transcript_id "HERVL18_1p21.1"; locus "HERVL18_1p21.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0006"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "294"; repStart "-13"; ### ERVLE_1p21.1e ### chr1 rmsk gene 105232875 105235785 . - . gene_id "ERVLE_1p21.1e"; transcript_id "ERVLE_1p21.1e"; locus "ERVLE_1p21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0167"; model_cov "1865"; model_pct "32.9"; chr1 rmsk exon 105232875 105233784 871 - . gene_id "ERVLE_1p21.1e"; transcript_id "ERVLE_1p21.1e"; locus "ERVLE_1p21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0167"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "2611"; repStart "-2042"; chr1 rmsk exon 105233955 105234081 266 - . gene_id "ERVLE_1p21.1e"; transcript_id "ERVLE_1p21.1e"; locus "ERVLE_1p21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0167"; repClass "LTR"; repEnd "2437"; repFamily "ERVL"; repLeft "2311"; repStart "-3230"; chr1 rmsk exon 105234913 105235147 400 - . gene_id "ERVLE_1p21.1e"; transcript_id "ERVLE_1p21.1e"; locus "ERVLE_1p21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0167"; repClass "LTR"; repEnd "1154"; repFamily "ERVL"; repLeft "912"; repStart "-4513"; chr1 rmsk exon 105235346 105235785 422 - . gene_id "ERVLE_1p21.1e"; transcript_id "ERVLE_1p21.1e"; locus "ERVLE_1p21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0167"; repClass "LTR"; repEnd "740"; repFamily "ERVL"; repLeft "257"; repStart "-4927"; ### ERV316A3_1p21.1h ### chr1 rmsk gene 105238520 105240989 . - . gene_id "ERV316A3_1p21.1h"; transcript_id "ERV316A3_1p21.1h"; locus "ERV316A3_1p21.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0098"; model_cov "2097"; model_pct "40.1"; chr1 rmsk exon 105238520 105238774 390 - . gene_id "ERV316A3_1p21.1h"; transcript_id "ERV316A3_1p21.1h"; locus "ERV316A3_1p21.1h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0098"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "3"; repStart "-118"; chr1 rmsk exon 105238839 105240507 2384 - . gene_id "ERV316A3_1p21.1h"; transcript_id "ERV316A3_1p21.1h"; locus "ERV316A3_1p21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0098"; repClass "LTR"; repEnd "5168"; repFamily "ERVL"; repLeft "3447"; repStart "-58"; chr1 rmsk exon 105240615 105240989 643 - . gene_id "ERV316A3_1p21.1h"; transcript_id "ERV316A3_1p21.1h"; locus "ERV316A3_1p21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0098"; repClass "LTR"; repEnd "2709"; repFamily "ERVL"; repLeft "2333"; repStart "-2517"; ### HUERSP2_1p21.1a ### chr1 rmsk gene 105396367 105398967 . - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0005"; model_cov "1490"; model_pct "48.3"; chr1 rmsk exon 105396367 105396992 3568 - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0005"; repClass "LTR"; repEnd "646"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 105396995 105397508 2330 - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0005"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "2467"; repStart "-2"; chr1 rmsk exon 105397508 105398229 2901 - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0005"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "642"; repStart "-1707"; chr1 rmsk exon 105398227 105398370 549 - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0005"; repClass "LTR"; repEnd "134"; repFamily "ERV1"; repLeft "2"; repStart "-2954"; chr1 rmsk exon 105398372 105398967 3458 - . gene_id "HUERSP2_1p21.1a"; transcript_id "HUERSP2_1p21.1a"; locus "HUERSP2_1p21.1a"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0005"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "24"; repStart "0"; ### ERVLB4_1p21.1b ### chr1 rmsk gene 105439916 105445065 . + . gene_id "ERVLB4_1p21.1b"; transcript_id "ERVLB4_1p21.1b"; locus "ERVLB4_1p21.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0058"; model_cov "4880"; model_pct "85.4"; chr1 rmsk exon 105439916 105440355 1352 + . gene_id "ERVLB4_1p21.1b"; transcript_id "ERVLB4_1p21.1b"; locus "ERVLB4_1p21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0058"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "61"; chr1 rmsk exon 105440356 105442585 6954 + . gene_id "ERVLB4_1p21.1b"; transcript_id "ERVLB4_1p21.1b"; locus "ERVLB4_1p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0058"; repClass "LTR"; repEnd "2344"; repFamily "ERVL"; repLeft "-3370"; repStart "1"; chr1 rmsk exon 105442582 105445065 11419 + . gene_id "ERVLB4_1p21.1b"; transcript_id "ERVLB4_1p21.1b"; locus "ERVLB4_1p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0058"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-496"; repStart "2681"; ### ERVLB4_1p21.1c ### chr1 rmsk gene 105518923 105520353 . - . gene_id "ERVLB4_1p21.1c"; transcript_id "ERVLB4_1p21.1c"; locus "ERVLB4_1p21.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0059"; model_cov "1306"; model_pct "22.9"; chr1 rmsk exon 105518923 105520110 4998 - . gene_id "ERVLB4_1p21.1c"; transcript_id "ERVLB4_1p21.1c"; locus "ERVLB4_1p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0059"; repClass "LTR"; repEnd "3185"; repFamily "ERVL"; repLeft "2016"; repStart "-2529"; chr1 rmsk exon 105520114 105520247 500 - . gene_id "ERVLB4_1p21.1c"; transcript_id "ERVLB4_1p21.1c"; locus "ERVLB4_1p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0059"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "1038"; repStart "-4539"; chr1 rmsk exon 105520253 105520353 324 - . gene_id "ERVLB4_1p21.1c"; transcript_id "ERVLB4_1p21.1c"; locus "ERVLB4_1p21.1c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0059"; repClass "LTR"; repEnd "104"; repFamily "ERVL"; repLeft "3"; repStart "-360"; ### HERVL_1p21.1e ### chr1 rmsk gene 105522046 105528669 . - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0059"; model_cov "5538"; model_pct "97.9"; chr1 rmsk exon 105522046 105522084 2902 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "415"; repStart "0"; chr1 rmsk exon 105522168 105522571 2902 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "2"; repStart "-39"; chr1 rmsk exon 105522572 105527821 38175 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "401"; repStart "0"; chr1 rmsk exon 105527819 105528121 1974 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "289"; repFamily "ERVL"; repLeft "4"; repStart "-5365"; chr1 rmsk exon 105528124 105528198 335 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr1 rmsk exon 105528261 105528669 2700 - . gene_id "HERVL_1p21.1e"; transcript_id "HERVL_1p21.1e"; locus "HERVL_1p21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0059"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVL_1p21.1b ### chr1 rmsk gene 105639314 105639857 . + . gene_id "ERVL_1p21.1b"; transcript_id "ERVL_1p21.1b"; locus "ERVL_1p21.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0015"; model_cov "597"; model_pct "10.4"; chr1 rmsk exon 105639314 105639857 522 + . gene_id "ERVL_1p21.1b"; transcript_id "ERVL_1p21.1b"; locus "ERVL_1p21.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0015"; repClass "LTR"; repEnd "2378"; repFamily "ERVL"; repLeft "-3379"; repStart "1781"; ### ERVLB4_1p21.1d ### chr1 rmsk gene 105663639 105664957 . + . gene_id "ERVLB4_1p21.1d"; transcript_id "ERVLB4_1p21.1d"; locus "ERVLB4_1p21.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0060"; model_cov "1346"; model_pct "23.6"; chr1 rmsk exon 105663639 105664957 6754 + . gene_id "ERVLB4_1p21.1d"; transcript_id "ERVLB4_1p21.1d"; locus "ERVLB4_1p21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0060"; repClass "LTR"; repEnd "5123"; repFamily "ERVL"; repLeft "-591"; repStart "3777"; ### HERVL_1p21.1f ### chr1 rmsk gene 105752830 105759721 . + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_0060"; model_cov "5666"; model_pct "100.0"; chr1 rmsk exon 105752830 105753215 2323 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr1 rmsk exon 105753273 105753347 281 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "379"; chr1 rmsk exon 105753348 105754559 8717 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "1228"; repFamily "ERVL"; repLeft "-4426"; repStart "1"; chr1 rmsk exon 105754826 105754863 320 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "38"; repFamily "ERVL"; repLeft "-415"; repStart "1"; chr1 rmsk exon 105754908 105759317 32397 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1215"; chr1 rmsk exon 105759318 105759721 2614 + . gene_id "HERVL_1p21.1f"; transcript_id "HERVL_1p21.1f"; locus "HERVL_1p21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0060"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### HERVL_1p21.1g ### chr1 rmsk gene 105809774 105811221 . - . gene_id "HERVL_1p21.1g"; transcript_id "HERVL_1p21.1g"; locus "HERVL_1p21.1g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0061"; model_cov "795"; model_pct "14.1"; chr1 rmsk exon 105809774 105809936 1111 - . gene_id "HERVL_1p21.1g"; transcript_id "HERVL_1p21.1g"; locus "HERVL_1p21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0061"; repClass "LTR"; repEnd "895"; repFamily "ERVL"; repLeft "728"; repStart "-4759"; chr1 rmsk exon 105810027 105810651 4570 - . gene_id "HERVL_1p21.1g"; transcript_id "HERVL_1p21.1g"; locus "HERVL_1p21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0061"; repClass "LTR"; repEnd "637"; repFamily "ERVL"; repLeft "9"; repStart "-5017"; chr1 rmsk exon 105810680 105810744 2838 - . gene_id "HERVL_1p21.1g"; transcript_id "HERVL_1p21.1g"; locus "HERVL_1p21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0061"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "390"; repStart "-5"; chr1 rmsk exon 105810831 105811221 2838 - . gene_id "HERVL_1p21.1g"; transcript_id "HERVL_1p21.1g"; locus "HERVL_1p21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0061"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-64"; ### ERV316A3_1p21.1i ### chr1 rmsk gene 105817801 105819097 . - . gene_id "ERV316A3_1p21.1i"; transcript_id "ERV316A3_1p21.1i"; locus "ERV316A3_1p21.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0099"; model_cov "651"; model_pct "12.5"; chr1 rmsk exon 105817801 105818171 646 - . gene_id "ERV316A3_1p21.1i"; transcript_id "ERV316A3_1p21.1i"; locus "ERV316A3_1p21.1i"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0099"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "139"; repStart "-14"; chr1 rmsk exon 105818262 105818338 225 - . gene_id "ERV316A3_1p21.1i"; transcript_id "ERV316A3_1p21.1i"; locus "ERV316A3_1p21.1i"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0099"; repClass "LTR"; repEnd "88"; repFamily "ERVL"; repLeft "12"; repStart "-450"; chr1 rmsk exon 105818456 105819097 957 - . gene_id "ERV316A3_1p21.1i"; transcript_id "ERV316A3_1p21.1i"; locus "ERV316A3_1p21.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0099"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "4468"; repStart "-107"; ### ERVLE_1p21.1f ### chr1 rmsk gene 105904649 105906125 . - . gene_id "ERVLE_1p21.1f"; transcript_id "ERVLE_1p21.1f"; locus "ERVLE_1p21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0169"; model_cov "1434"; model_pct "25.3"; chr1 rmsk exon 105904649 105905311 1535 - . gene_id "ERVLE_1p21.1f"; transcript_id "ERVLE_1p21.1f"; locus "ERVLE_1p21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0169"; repClass "LTR"; repEnd "5075"; repFamily "ERVL"; repLeft "4415"; repStart "-592"; chr1 rmsk exon 105905364 105906125 1778 - . gene_id "ERVLE_1p21.1f"; transcript_id "ERVLE_1p21.1f"; locus "ERVLE_1p21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0169"; repClass "LTR"; repEnd "3285"; repFamily "ERVL"; repLeft "2511"; repStart "-2382"; ### HUERSP2_1p21.1b ### chr1 rmsk gene 105908891 105912681 . + . gene_id "HUERSP2_1p21.1b"; transcript_id "HUERSP2_1p21.1b"; locus "HUERSP2_1p21.1b"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0006"; model_cov "2550"; model_pct "82.6"; chr1 rmsk exon 105908891 105909856 5700 + . gene_id "HUERSP2_1p21.1b"; transcript_id "HUERSP2_1p21.1b"; locus "HUERSP2_1p21.1b"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0006"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 105909860 105909909 258 + . gene_id "HUERSP2_1p21.1b"; transcript_id "HUERSP2_1p21.1b"; locus "HUERSP2_1p21.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0006"; repClass "LTR"; repEnd "-3949"; repFamily "ERV1"; repLeft "-7037"; repStart "-3997"; chr1 rmsk exon 105909977 105912681 11224 + . gene_id "HUERSP2_1p21.1b"; transcript_id "HUERSP2_1p21.1b"; locus "HUERSP2_1p21.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0006"; repClass "LTR"; repEnd "2671"; repFamily "ERV1"; repLeft "-417"; repStart "169"; ### HUERSP2_1p21.1c ### chr1 rmsk gene 105912732 105914841 . + . gene_id "HUERSP2_1p21.1c"; transcript_id "HUERSP2_1p21.1c"; locus "HUERSP2_1p21.1c"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0007"; model_cov "985"; model_pct "31.9"; chr1 rmsk exon 105912732 105913507 4201 + . gene_id "HUERSP2_1p21.1c"; transcript_id "HUERSP2_1p21.1c"; locus "HUERSP2_1p21.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0007"; repClass "LTR"; repEnd "2587"; repFamily "ERV1"; repLeft "-501"; repStart "1945"; chr1 rmsk exon 105913515 105913854 2069 + . gene_id "HUERSP2_1p21.1c"; transcript_id "HUERSP2_1p21.1c"; locus "HUERSP2_1p21.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0007"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "-1"; repStart "2744"; chr1 rmsk exon 105913857 105914841 5721 + . gene_id "HUERSP2_1p21.1c"; transcript_id "HUERSP2_1p21.1c"; locus "HUERSP2_1p21.1c"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0007"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p21.1g ### chr1 rmsk gene 106032691 106037140 . + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0171"; model_cov "3978"; model_pct "70.2"; chr1 rmsk exon 106032691 106034003 1919 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "1494"; repFamily "ERVL"; repLeft "-4173"; repStart "76"; chr1 rmsk exon 106034034 106034511 1919 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "2013"; repFamily "ERVL"; repLeft "-3654"; repStart "1495"; chr1 rmsk exon 106034531 106035435 2819 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "4409"; repFamily "ERVL"; repLeft "-1258"; repStart "3484"; chr1 rmsk exon 106035404 106036152 1471 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "-448"; repStart "4252"; chr1 rmsk exon 106036386 106036532 486 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5516"; chr1 rmsk exon 106036536 106037140 547 + . gene_id "ERVLE_1p21.1g"; transcript_id "ERVLE_1p21.1g"; locus "ERVLE_1p21.1g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0171"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### MER41_1p21.1 ### chr1 rmsk gene 106116173 106120631 . + . gene_id "MER41_1p21.1"; transcript_id "MER41_1p21.1"; locus "MER41_1p21.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0018"; model_cov "2904"; model_pct "48.8"; chr1 rmsk exon 106116173 106116874 13581 + . gene_id "MER41_1p21.1"; transcript_id "MER41_1p21.1"; locus "MER41_1p21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0018"; repClass "LTR"; repEnd "3058"; repFamily "ERV1"; repLeft "-2888"; repStart "2615"; chr1 rmsk exon 106117164 106118871 13581 + . gene_id "MER41_1p21.1"; transcript_id "MER41_1p21.1"; locus "MER41_1p21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0018"; repClass "LTR"; repEnd "4828"; repFamily "ERV1"; repLeft "-1118"; repStart "3059"; chr1 rmsk exon 106119173 106119836 13581 + . gene_id "MER41_1p21.1"; transcript_id "MER41_1p21.1"; locus "MER41_1p21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0018"; repClass "LTR"; repEnd "5499"; repFamily "ERV1"; repLeft "-447"; repStart "4829"; chr1 rmsk exon 106120150 106120631 13581 + . gene_id "MER41_1p21.1"; transcript_id "MER41_1p21.1"; locus "MER41_1p21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0018"; repClass "LTR"; repEnd "5522"; repFamily "ERV1"; repLeft "-424"; repStart "5500"; ### HERVK11_1p21.1 ### chr1 rmsk gene 106159069 106162062 . + . gene_id "HERVK11_1p21.1"; transcript_id "HERVK11_1p21.1"; locus "HERVK11_1p21.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0005"; model_cov "1872"; model_pct "23.5"; chr1 rmsk exon 106159069 106159132 357 + . gene_id "HERVK11_1p21.1"; transcript_id "HERVK11_1p21.1"; locus "HERVK11_1p21.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0005"; repClass "LTR"; repEnd "58"; repFamily "ERVK"; repLeft "-1208"; repStart "1"; chr1 rmsk exon 106159133 106160005 6513 + . gene_id "HERVK11_1p21.1"; transcript_id "HERVK11_1p21.1"; locus "HERVK11_1p21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0005"; repClass "LTR"; repEnd "5939"; repFamily "ERVK"; repLeft "-2014"; repStart "5066"; chr1 rmsk exon 106160091 106161066 7714 + . gene_id "HERVK11_1p21.1"; transcript_id "HERVK11_1p21.1"; locus "HERVK11_1p21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0005"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6954"; chr1 rmsk exon 106161067 106162062 4179 + . gene_id "HERVK11_1p21.1"; transcript_id "HERVK11_1p21.1"; locus "HERVK11_1p21.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0005"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_1p21.1j ### chr1 rmsk gene 106231443 106232118 . - . gene_id "ERV316A3_1p21.1j"; transcript_id "ERV316A3_1p21.1j"; locus "ERV316A3_1p21.1j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0100"; model_cov "648"; model_pct "12.4"; chr1 rmsk exon 106231443 106231735 430 - . gene_id "ERV316A3_1p21.1j"; transcript_id "ERV316A3_1p21.1j"; locus "ERV316A3_1p21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0100"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4783"; repStart "-142"; chr1 rmsk exon 106231864 106232118 368 - . gene_id "ERV316A3_1p21.1j"; transcript_id "ERV316A3_1p21.1j"; locus "ERV316A3_1p21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0100"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "4091"; repStart "-788"; ### MER61_1p21.1g ### chr1 rmsk gene 106344473 106349394 . - . gene_id "MER61_1p21.1g"; transcript_id "MER61_1p21.1g"; locus "MER61_1p21.1g"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0016"; model_cov "4127"; model_pct "79.1"; chr1 rmsk exon 106344473 106344791 1487 - . gene_id "MER61_1p21.1g"; transcript_id "MER61_1p21.1g"; locus "MER61_1p21.1g"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0016"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 106344792 106348488 23428 - . gene_id "MER61_1p21.1g"; transcript_id "MER61_1p21.1g"; locus "MER61_1p21.1g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0016"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "1655"; repStart "-1"; chr1 rmsk exon 106348510 106349069 2356 - . gene_id "MER61_1p21.1g"; transcript_id "MER61_1p21.1g"; locus "MER61_1p21.1g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0016"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "1"; repStart "-4650"; chr1 rmsk exon 106349070 106349394 1620 - . gene_id "MER61_1p21.1g"; transcript_id "MER61_1p21.1g"; locus "MER61_1p21.1g"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0016"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1p21.1h ### chr1 rmsk gene 106451709 106454233 . - . gene_id "ERVLE_1p21.1h"; transcript_id "ERVLE_1p21.1h"; locus "ERVLE_1p21.1h"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0172"; model_cov "2060"; model_pct "36.4"; chr1 rmsk exon 106451709 106453683 6194 - . gene_id "ERVLE_1p21.1h"; transcript_id "ERVLE_1p21.1h"; locus "ERVLE_1p21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0172"; repClass "LTR"; repEnd "2080"; repFamily "ERVL"; repLeft "20"; repStart "-3587"; chr1 rmsk exon 106453716 106454233 744 - . gene_id "ERVLE_1p21.1h"; transcript_id "ERVLE_1p21.1h"; locus "ERVLE_1p21.1h"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0172"; repClass "LTR"; repEnd "650"; repFamily "ERVL"; repLeft "37"; repStart "-13"; ### HERVL_1p21.1h ### chr1 rmsk gene 106585294 106591567 . - . gene_id "HERVL_1p21.1h"; transcript_id "HERVL_1p21.1h"; locus "HERVL_1p21.1h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0063"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 106585294 106585690 2933 - . gene_id "HERVL_1p21.1h"; transcript_id "HERVL_1p21.1h"; locus "HERVL_1p21.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0063"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; chr1 rmsk exon 106585691 106591329 42781 - . gene_id "HERVL_1p21.1h"; transcript_id "HERVL_1p21.1h"; locus "HERVL_1p21.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0063"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 106591376 106591567 1441 - . gene_id "HERVL_1p21.1h"; transcript_id "HERVL_1p21.1h"; locus "HERVL_1p21.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0063"; repClass "LTR"; repEnd "192"; repFamily "ERVL"; repLeft "1"; repStart "-252"; ### ERVLE_1p13.3a ### chr1 rmsk gene 107112076 107114542 . - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0173"; model_cov "1759"; model_pct "31.0"; chr1 rmsk exon 107112076 107112118 477 - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0173"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "619"; repStart "-2"; chr1 rmsk exon 107112202 107112296 477 - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0173"; repClass "LTR"; repEnd "618"; repFamily "ERVL"; repLeft "519"; repStart "-45"; chr1 rmsk exon 107112297 107113410 6009 - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0173"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "3760"; repStart "-680"; chr1 rmsk exon 107113708 107114247 6009 - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0173"; repClass "LTR"; repEnd "3759"; repFamily "ERVL"; repLeft "3227"; repStart "-1908"; chr1 rmsk exon 107114395 107114542 660 - . gene_id "ERVLE_1p13.3a"; transcript_id "ERVLE_1p13.3a"; locus "ERVLE_1p13.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0173"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "1"; repStart "-517"; ### HERVL_1p13.3a ### chr1 rmsk gene 107568515 107570449 . + . gene_id "HERVL_1p13.3a"; transcript_id "HERVL_1p13.3a"; locus "HERVL_1p13.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0064"; model_cov "2161"; model_pct "38.2"; chr1 rmsk exon 107568515 107570449 8273 + . gene_id "HERVL_1p13.3a"; transcript_id "HERVL_1p13.3a"; locus "HERVL_1p13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0064"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-783"; repStart "2710"; ### HERVL_1p13.3b ### chr1 rmsk gene 108018546 108023153 . - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0065"; model_cov "4253"; model_pct "75.2"; chr1 rmsk exon 108018546 108018633 3339 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr1 rmsk exon 108018684 108018699 3339 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "404"; repStart "-49"; chr1 rmsk exon 108018727 108019125 3339 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-49"; chr1 rmsk exon 108019126 108021864 13199 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2633"; repStart "0"; chr1 rmsk exon 108021854 108023075 9820 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "1233"; repFamily "ERVL"; repLeft "1"; repStart "-4421"; chr1 rmsk exon 108023076 108023153 350 - . gene_id "HERVL_1p13.3b"; transcript_id "HERVL_1p13.3b"; locus "HERVL_1p13.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0065"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "368"; repStart "0"; ### ERVLE_1p13.3b ### chr1 rmsk gene 108065479 108067847 . - . gene_id "ERVLE_1p13.3b"; transcript_id "ERVLE_1p13.3b"; locus "ERVLE_1p13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0174"; model_cov "1113"; model_pct "19.6"; chr1 rmsk exon 108065479 108065828 1155 - . gene_id "ERVLE_1p13.3b"; transcript_id "ERVLE_1p13.3b"; locus "ERVLE_1p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0174"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "2186"; repStart "-3118"; chr1 rmsk exon 108065824 108065984 429 - . gene_id "ERVLE_1p13.3b"; transcript_id "ERVLE_1p13.3b"; locus "ERVLE_1p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0174"; repClass "LTR"; repEnd "2236"; repFamily "ERVL"; repLeft "2059"; repStart "-3431"; chr1 rmsk exon 108066519 108066826 607 - . gene_id "ERVLE_1p13.3b"; transcript_id "ERVLE_1p13.3b"; locus "ERVLE_1p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0174"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "1493"; repStart "-3877"; chr1 rmsk exon 108067567 108067847 279 - . gene_id "ERVLE_1p13.3b"; transcript_id "ERVLE_1p13.3b"; locus "ERVLE_1p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0174"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "145"; repStart "-5246"; ### HERVH_1p13.3 ### chr1 rmsk gene 108473290 108478596 . + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0054"; model_cov "4906"; model_pct "63.6"; chr1 rmsk exon 108473290 108473396 974 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr1 rmsk exon 108473397 108476341 20398 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 108476336 108476483 827 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 108476474 108476977 3516 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 108476980 108477638 3035 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 108477640 108477855 1462 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 108477856 108478232 2366 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 108478233 108478596 2391 + . gene_id "HERVH_1p13.3"; transcript_id "HERVH_1p13.3"; locus "HERVH_1p13.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0054"; repClass "LTR"; repEnd "403"; repFamily "ERV1"; repLeft "-47"; repStart "1"; ### ERV316A3_1p13.3a ### chr1 rmsk gene 109430469 109433302 . + . gene_id "ERV316A3_1p13.3a"; transcript_id "ERV316A3_1p13.3a"; locus "ERV316A3_1p13.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0102"; model_cov "1862"; model_pct "35.6"; chr1 rmsk exon 109430469 109430755 1676 + . gene_id "ERV316A3_1p13.3a"; transcript_id "ERV316A3_1p13.3a"; locus "ERV316A3_1p13.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0102"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "-45"; repStart "130"; chr1 rmsk exon 109431154 109431205 1676 + . gene_id "ERV316A3_1p13.3a"; transcript_id "ERV316A3_1p13.3a"; locus "ERV316A3_1p13.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0102"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "419"; chr1 rmsk exon 109431207 109432665 3741 + . gene_id "ERV316A3_1p13.3a"; transcript_id "ERV316A3_1p13.3a"; locus "ERV316A3_1p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0102"; repClass "LTR"; repEnd "1107"; repFamily "ERVL"; repLeft "-4119"; repStart "-482"; chr1 rmsk exon 109433058 109433302 1015 + . gene_id "ERV316A3_1p13.3a"; transcript_id "ERV316A3_1p13.3a"; locus "ERV316A3_1p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0102"; repClass "LTR"; repEnd "3913"; repFamily "ERVL"; repLeft "-1313"; repStart "3640"; ### ERV316A3_1p13.3b ### chr1 rmsk gene 109436278 109439099 . + . gene_id "ERV316A3_1p13.3b"; transcript_id "ERV316A3_1p13.3b"; locus "ERV316A3_1p13.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0103"; model_cov "1283"; model_pct "24.6"; chr1 rmsk exon 109436278 109436774 1730 + . gene_id "ERV316A3_1p13.3b"; transcript_id "ERV316A3_1p13.3b"; locus "ERV316A3_1p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0103"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "-832"; repStart "3911"; chr1 rmsk exon 109437426 109437522 282 + . gene_id "ERV316A3_1p13.3b"; transcript_id "ERV316A3_1p13.3b"; locus "ERV316A3_1p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0103"; repClass "LTR"; repEnd "4614"; repFamily "ERVL"; repLeft "-612"; repStart "4520"; chr1 rmsk exon 109438211 109438852 2728 + . gene_id "ERV316A3_1p13.3b"; transcript_id "ERV316A3_1p13.3b"; locus "ERV316A3_1p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0103"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "-44"; repStart "4476"; chr1 rmsk exon 109438892 109439099 968 + . gene_id "ERV316A3_1p13.3b"; transcript_id "ERV316A3_1p13.3b"; locus "ERV316A3_1p13.3b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0103"; repClass "LTR"; repEnd "221"; repFamily "ERVL"; repLeft "-242"; repStart "1"; ### MER41_1p13.3 ### chr1 rmsk gene 109452767 109456086 . - . gene_id "MER41_1p13.3"; transcript_id "MER41_1p13.3"; locus "MER41_1p13.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0019"; model_cov "2304"; model_pct "38.7"; chr1 rmsk exon 109452767 109452827 1596 - . gene_id "MER41_1p13.3"; transcript_id "MER41_1p13.3"; locus "MER41_1p13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0019"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5896"; repStart "0"; chr1 rmsk exon 109453129 109453911 11560 - . gene_id "MER41_1p13.3"; transcript_id "MER41_1p13.3"; locus "MER41_1p13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0019"; repClass "LTR"; repEnd "5522"; repFamily "ERV1"; repLeft "5188"; repStart "-424"; chr1 rmsk exon 109454204 109456086 11560 - . gene_id "MER41_1p13.3"; transcript_id "MER41_1p13.3"; locus "MER41_1p13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0019"; repClass "LTR"; repEnd "5187"; repFamily "ERV1"; repLeft "3267"; repStart "-759"; ### HERVK11_1p13.3 ### chr1 rmsk gene 109702615 109709643 . + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0007"; model_cov "4998"; model_pct "62.8"; chr1 rmsk exon 109702615 109703645 4889 + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0007"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 109703646 109706693 22969 + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0007"; repClass "LTR"; repEnd "3033"; repFamily "ERVK"; repLeft "-4920"; repStart "1"; chr1 rmsk exon 109706704 109708522 14376 + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0007"; repClass "LTR"; repEnd "7203"; repFamily "ERVK"; repLeft "-750"; repStart "5331"; chr1 rmsk exon 109708526 109708620 750 + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0007"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "7859"; chr1 rmsk exon 109708621 109709643 4754 + . gene_id "HERVK11_1p13.3"; transcript_id "HERVK11_1p13.3"; locus "HERVK11_1p13.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0007"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_1p13.3 ### chr1 rmsk gene 109725517 109727169 . + . gene_id "HML6_1p13.3"; transcript_id "HML6_1p13.3"; locus "HML6_1p13.3"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0003"; model_cov "1258"; model_pct "17.5"; chr1 rmsk exon 109725517 109725947 3139 + . gene_id "HML6_1p13.3"; transcript_id "HML6_1p13.3"; locus "HML6_1p13.3"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0003"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 109725949 109727169 5158 + . gene_id "HML6_1p13.3"; transcript_id "HML6_1p13.3"; locus "HML6_1p13.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0003"; repClass "LTR"; repEnd "1259"; repFamily "ERVK"; repLeft "-5943"; repStart "1"; ### PABLA_1p13.3 ### chr1 rmsk gene 109727607 109728490 . - . gene_id "PABLA_1p13.3"; transcript_id "PABLA_1p13.3"; locus "PABLA_1p13.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0004"; model_cov "804"; model_pct "16.0"; chr1 rmsk exon 109727607 109728373 2877 - . gene_id "PABLA_1p13.3"; transcript_id "PABLA_1p13.3"; locus "PABLA_1p13.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0004"; repClass "LTR"; repEnd "-315"; repFamily "ERV1"; repLeft "-1080"; repStart "-5330"; chr1 rmsk exon 109728451 109728490 253 - . gene_id "PABLA_1p13.3"; transcript_id "PABLA_1p13.3"; locus "PABLA_1p13.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0004"; repClass "LTR"; repEnd "-857"; repFamily "ERV1"; repLeft "-896"; repStart "-5872"; ### PRIMA4_1p13.3 ### chr1 rmsk gene 109728800 109729846 . - . gene_id "PRIMA4_1p13.3"; transcript_id "PRIMA4_1p13.3"; locus "PRIMA4_1p13.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0004"; model_cov "1020"; model_pct "12.3"; chr1 rmsk exon 109728800 109729846 5072 - . gene_id "PRIMA4_1p13.3"; transcript_id "PRIMA4_1p13.3"; locus "PRIMA4_1p13.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0004"; repClass "LTR"; repEnd "1021"; repFamily "ERV1"; repLeft "1"; repStart "-7249"; ### HUERSP1_1p13.3 ### chr1 rmsk gene 109831306 109839763 . + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0010"; model_cov "6260"; model_pct "100.0"; chr1 rmsk exon 109831306 109831751 5080 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-237"; repStart "1"; chr1 rmsk exon 109832062 109832300 5080 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "455"; chr1 rmsk exon 109832301 109833856 46513 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "1625"; repFamily "ERV1"; repLeft "-4638"; repStart "1"; chr1 rmsk exon 109834134 109836878 46513 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "4374"; repFamily "ERV1"; repLeft "-1889"; repStart "1626"; chr1 rmsk exon 109837311 109839098 46513 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4375"; chr1 rmsk exon 109839099 109839763 5162 + . gene_id "HUERSP1_1p13.3"; transcript_id "HUERSP1_1p13.3"; locus "HUERSP1_1p13.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0010"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_1p13.3 ### chr1 rmsk gene 109852233 109858142 . - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0011"; model_cov "4891"; model_pct "56.7"; chr1 rmsk exon 109852233 109852977 5518 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 109852978 109853265 2417 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr1 rmsk exon 109853256 109853295 278 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7509"; repStart "-1078"; chr1 rmsk exon 109853288 109856868 30037 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr1 rmsk exon 109856852 109857826 7911 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1044"; repStart "-6610"; chr1 rmsk exon 109857829 109858142 2420 - . gene_id "HERVW_1p13.3"; transcript_id "HERVW_1p13.3"; locus "HERVW_1p13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0011"; repClass "LTR"; repEnd "311"; repFamily "ERV1"; repLeft "1"; repStart "-469"; ### HUERSP3_1p13.3 ### chr1 rmsk gene 111027825 111033434 . + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0008"; model_cov "3793"; model_pct "42.5"; chr1 rmsk exon 111027825 111028434 3250 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr1 rmsk exon 111028435 111028540 254 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "1609"; repFamily "ERV1"; repLeft "-7310"; repStart "1502"; chr1 rmsk exon 111028533 111028670 650 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "2060"; repFamily "ERV1"; repLeft "-6859"; repStart "1912"; chr1 rmsk exon 111028742 111029578 4111 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "3379"; repFamily "ERV1"; repLeft "-5540"; repStart "2545"; chr1 rmsk exon 111029578 111030582 6440 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "2278"; chr1 rmsk exon 111030576 111030716 789 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "4679"; repFamily "ERV1"; repLeft "-4240"; repStart "4539"; chr1 rmsk exon 111030749 111031364 4055 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-3342"; repStart "4961"; chr1 rmsk exon 111031350 111031955 3865 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "6768"; repFamily "ERV1"; repLeft "-2151"; repStart "6162"; chr1 rmsk exon 111032005 111032096 380 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "6974"; repFamily "ERV1"; repLeft "-1945"; repStart "6856"; chr1 rmsk exon 111032629 111032847 1270 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr1 rmsk exon 111032848 111033434 2276 + . gene_id "HUERSP3_1p13.3"; transcript_id "HUERSP3_1p13.3"; locus "HUERSP3_1p13.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0008"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "-21"; ### ERVLE_1p13.2a ### chr1 rmsk gene 111433796 111435683 . + . gene_id "ERVLE_1p13.2a"; transcript_id "ERVLE_1p13.2a"; locus "ERVLE_1p13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0177"; model_cov "1863"; model_pct "32.9"; chr1 rmsk exon 111433796 111434524 2665 + . gene_id "ERVLE_1p13.2a"; transcript_id "ERVLE_1p13.2a"; locus "ERVLE_1p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0177"; repClass "LTR"; repEnd "2207"; repFamily "ERVL"; repLeft "-3460"; repStart "1498"; chr1 rmsk exon 111434552 111435006 2665 + . gene_id "ERVLE_1p13.2a"; transcript_id "ERVLE_1p13.2a"; locus "ERVLE_1p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0177"; repClass "LTR"; repEnd "2676"; repFamily "ERVL"; repLeft "-2991"; repStart "2208"; chr1 rmsk exon 111435002 111435683 1532 + . gene_id "ERVLE_1p13.2a"; transcript_id "ERVLE_1p13.2a"; locus "ERVLE_1p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0177"; repClass "LTR"; repEnd "5303"; repFamily "ERVL"; repLeft "-364"; repStart "4617"; ### ERVLE_1p13.2b ### chr1 rmsk gene 112097132 112101265 . + . gene_id "ERVLE_1p13.2b"; transcript_id "ERVLE_1p13.2b"; locus "ERVLE_1p13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0179"; model_cov "3783"; model_pct "66.8"; chr1 rmsk exon 112097132 112097633 1007 + . gene_id "ERVLE_1p13.2b"; transcript_id "ERVLE_1p13.2b"; locus "ERVLE_1p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0179"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "-4911"; repStart "225"; chr1 rmsk exon 112097766 112097954 259 + . gene_id "ERVLE_1p13.2b"; transcript_id "ERVLE_1p13.2b"; locus "ERVLE_1p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0179"; repClass "LTR"; repEnd "1912"; repFamily "ERVL"; repLeft "-3755"; repStart "1721"; chr1 rmsk exon 112098315 112100711 3566 + . gene_id "ERVLE_1p13.2b"; transcript_id "ERVLE_1p13.2b"; locus "ERVLE_1p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0179"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "-1231"; repStart "2048"; chr1 rmsk exon 112100728 112101265 859 + . gene_id "ERVLE_1p13.2b"; transcript_id "ERVLE_1p13.2b"; locus "ERVLE_1p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0179"; repClass "LTR"; repEnd "4716"; repFamily "ERVL"; repLeft "-951"; repStart "4043"; ### HERVL_1p13.2a ### chr1 rmsk gene 112126003 112132607 . - . gene_id "HERVL_1p13.2a"; transcript_id "HERVL_1p13.2a"; locus "HERVL_1p13.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0066"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 112126003 112126465 2841 - . gene_id "HERVL_1p13.2a"; transcript_id "HERVL_1p13.2a"; locus "HERVL_1p13.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0066"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr1 rmsk exon 112126466 112132095 45774 - . gene_id "HERVL_1p13.2a"; transcript_id "HERVL_1p13.2a"; locus "HERVL_1p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0066"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 112132194 112132607 3031 - . gene_id "HERVL_1p13.2a"; transcript_id "HERVL_1p13.2a"; locus "HERVL_1p13.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0066"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "1"; repStart "-25"; ### ERVLE_1p13.2c ### chr1 rmsk gene 112219335 112220398 . + . gene_id "ERVLE_1p13.2c"; transcript_id "ERVLE_1p13.2c"; locus "ERVLE_1p13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0180"; model_cov "992"; model_pct "17.5"; chr1 rmsk exon 112219335 112220008 887 + . gene_id "ERVLE_1p13.2c"; transcript_id "ERVLE_1p13.2c"; locus "ERVLE_1p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0180"; repClass "LTR"; repEnd "686"; repFamily "ERVL"; repLeft "-4981"; repStart "5"; chr1 rmsk exon 112220100 112220398 520 + . gene_id "ERVLE_1p13.2c"; transcript_id "ERVLE_1p13.2c"; locus "ERVLE_1p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0180"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "-4525"; repStart "831"; ### ERVLE_1p13.2d ### chr1 rmsk gene 112274154 112278673 . + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0181"; model_cov "2981"; model_pct "52.6"; chr1 rmsk exon 112274154 112275159 1807 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "-4152"; repStart "510"; chr1 rmsk exon 112276305 112276660 878 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "2045"; repFamily "ERVL"; repLeft "-3622"; repStart "1679"; chr1 rmsk exon 112276671 112277065 1581 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "3232"; repFamily "ERVL"; repLeft "-2435"; repStart "2815"; chr1 rmsk exon 112277134 112277428 1581 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "3535"; repFamily "ERVL"; repLeft "-2132"; repStart "3233"; chr1 rmsk exon 112277420 112277486 1666 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "4635"; repFamily "ERVL"; repLeft "-1032"; repStart "4581"; chr1 rmsk exon 112277841 112278673 1646 + . gene_id "ERVLE_1p13.2d"; transcript_id "ERVLE_1p13.2d"; locus "ERVLE_1p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0181"; repClass "LTR"; repEnd "5473"; repFamily "ERVL"; repLeft "-194"; repStart "4636"; ### ERVLE_1p13.2e ### chr1 rmsk gene 112734675 112738529 . + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0182"; model_cov "2240"; model_pct "39.5"; chr1 rmsk exon 112734675 112735066 1910 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-5262"; repStart "7"; chr1 rmsk exon 112735729 112735780 364 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-5224"; repStart "392"; chr1 rmsk exon 112735960 112736244 1954 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "2408"; repFamily "ERVL"; repLeft "-3259"; repStart "2101"; chr1 rmsk exon 112736558 112736638 1954 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "2478"; repFamily "ERVL"; repLeft "-3189"; repStart "2409"; chr1 rmsk exon 112736949 112737048 1954 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "2579"; repFamily "ERVL"; repLeft "-3088"; repStart "2479"; chr1 rmsk exon 112737058 112737176 521 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "-1904"; repStart "3623"; chr1 rmsk exon 112737334 112738328 4495 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "4806"; repFamily "ERVL"; repLeft "-861"; repStart "3783"; chr1 rmsk exon 112738379 112738529 780 + . gene_id "ERVLE_1p13.2e"; transcript_id "ERVLE_1p13.2e"; locus "ERVLE_1p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0182"; repClass "LTR"; repEnd "5317"; repFamily "ERVL"; repLeft "-350"; repStart "5165"; ### HERVH_1p13.2a ### chr1 rmsk gene 112809667 112815325 . + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0056"; model_cov "4574"; model_pct "59.3"; chr1 rmsk exon 112809667 112810079 2743 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 112810083 112810549 3075 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr1 rmsk exon 112810610 112812851 13541 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "801"; chr1 rmsk exon 112812838 112812984 854 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 112812975 112813477 3176 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 112813475 112814105 3007 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chr1 rmsk exon 112814107 112814282 1274 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "5775"; repFamily "ERV1"; repLeft "-1938"; repStart "5600"; chr1 rmsk exon 112814558 112814599 1274 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "5818"; repFamily "ERV1"; repLeft "-1895"; repStart "5776"; chr1 rmsk exon 112814600 112814992 2538 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 112814993 112815325 1618 + . gene_id "HERVH_1p13.2a"; transcript_id "HERVH_1p13.2a"; locus "HERVH_1p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0056"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-25"; repStart "-21"; ### HERVH_1p13.2b ### chr1 rmsk gene 112820145 112826054 . - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0057"; model_cov "5001"; model_pct "64.8"; chr1 rmsk exon 112820145 112820531 1996 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "1"; repStart "-12"; chr1 rmsk exon 112820532 112820926 2580 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 112820927 112821141 1354 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 112821143 112822269 6169 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3962"; repStart "-2564"; chr1 rmsk exon 112822264 112822629 2189 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "3357"; repStart "-3978"; chr1 rmsk exon 112822630 112823232 13024 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "2251"; repStart "-4883"; chr1 rmsk exon 112823542 112825658 13024 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "2250"; repFamily "ERV1"; repLeft "1"; repStart "-5463"; chr1 rmsk exon 112825661 112826054 2543 - . gene_id "HERVH_1p13.2b"; transcript_id "HERVH_1p13.2b"; locus "HERVH_1p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0057"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HARLEQUIN_1p13.2a ### chr1 rmsk gene 112826180 112832724 . + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0014"; model_cov "5721"; model_pct "83.0"; chr1 rmsk exon 112826180 112826631 3213 + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0014"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 112826632 112827533 6726 + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0014"; repClass "LTR"; repEnd "916"; repFamily "ERV1"; repLeft "-5980"; repStart "1"; chr1 rmsk exon 112827510 112831188 26889 + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0014"; repClass "LTR"; repEnd "5125"; repFamily "ERV1"; repLeft "-1771"; repStart "1405"; chr1 rmsk exon 112831174 112832261 7405 + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0014"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5810"; chr1 rmsk exon 112832262 112832724 3480 + . gene_id "HARLEQUIN_1p13.2a"; transcript_id "HARLEQUIN_1p13.2a"; locus "HARLEQUIN_1p13.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0014"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_1p13.2 ### chr1 rmsk gene 112888845 112896088 . - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0020"; model_cov "1839"; model_pct "34.3"; chr1 rmsk exon 112888845 112889036 774 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "4812"; repFamily "ERV1"; repLeft "4612"; repStart "-544"; chr1 rmsk exon 112889026 112889108 296 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "5034"; repFamily "ERV1"; repLeft "4952"; repStart "-322"; chr1 rmsk exon 112889717 112889920 980 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "4940"; repFamily "ERV1"; repLeft "4737"; repStart "-416"; chr1 rmsk exon 112890213 112890565 1790 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "4303"; repFamily "ERV1"; repLeft "3939"; repStart "-1053"; chr1 rmsk exon 112890959 112890993 583 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "3612"; repFamily "ERV1"; repLeft "3581"; repStart "-1744"; chr1 rmsk exon 112891293 112891618 2461 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "3423"; repStart "-1770"; chr1 rmsk exon 112891929 112892224 2461 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "3422"; repFamily "ERV1"; repLeft "3119"; repStart "-1934"; chr1 rmsk exon 112892525 112892587 2461 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "3118"; repFamily "ERV1"; repLeft "3058"; repStart "-2238"; chr1 rmsk exon 112892872 112893024 2461 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "3057"; repFamily "ERV1"; repLeft "2905"; repStart "-2299"; chr1 rmsk exon 112893335 112893488 2461 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "2904"; repFamily "ERV1"; repLeft "2817"; repStart "-2452"; chr1 rmsk exon 112894465 112894525 328 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "1945"; repFamily "ERV1"; repLeft "1890"; repStart "-3411"; chr1 rmsk exon 112895957 112896088 328 - . gene_id "MER34B_1p13.2"; transcript_id "MER34B_1p13.2"; locus "MER34B_1p13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0020"; repClass "LTR"; repEnd "1889"; repFamily "ERV1"; repLeft "1750"; repStart "-3467"; ### HERVH_1p13.2c ### chr1 rmsk gene 114029672 114032484 . + . gene_id "HERVH_1p13.2c"; transcript_id "HERVH_1p13.2c"; locus "HERVH_1p13.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0058"; model_cov "2839"; model_pct "36.8"; chr1 rmsk exon 114029672 114029933 1792 + . gene_id "HERVH_1p13.2c"; transcript_id "HERVH_1p13.2c"; locus "HERVH_1p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0058"; repClass "LTR"; repEnd "3734"; repFamily "ERV1"; repLeft "-3979"; repStart "3472"; chr1 rmsk exon 114029930 114031524 8008 + . gene_id "HERVH_1p13.2c"; transcript_id "HERVH_1p13.2c"; locus "HERVH_1p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0058"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "3995"; chr1 rmsk exon 114031518 114032083 3601 + . gene_id "HERVH_1p13.2c"; transcript_id "HERVH_1p13.2c"; locus "HERVH_1p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0058"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 114032084 114032484 2616 + . gene_id "HERVH_1p13.2c"; transcript_id "HERVH_1p13.2c"; locus "HERVH_1p13.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0058"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1p13.2b ### chr1 rmsk gene 114065118 114071980 . - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0067"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 114065118 114065541 3121 - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0067"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 114065542 114066254 42764 - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0067"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4932"; repStart "0"; chr1 rmsk exon 114066556 114071477 42764 - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0067"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "1"; repStart "-723"; chr1 rmsk exon 114071478 114071564 275 - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0067"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "357"; repStart "0"; chr1 rmsk exon 114071553 114071980 2893 - . gene_id "HERVL_1p13.2b"; transcript_id "HERVL_1p13.2b"; locus "HERVL_1p13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0067"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-117"; repStart "-30"; ### ERVLE_1p13.2f ### chr1 rmsk gene 114264637 114265485 . - . gene_id "ERVLE_1p13.2f"; transcript_id "ERVLE_1p13.2f"; locus "ERVLE_1p13.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0184"; model_cov "769"; model_pct "13.6"; chr1 rmsk exon 114264637 114264907 1262 - . gene_id "ERVLE_1p13.2f"; transcript_id "ERVLE_1p13.2f"; locus "ERVLE_1p13.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0184"; repClass "LTR"; repEnd "766"; repFamily "ERVL"; repLeft "490"; repStart "-4901"; chr1 rmsk exon 114265005 114265485 2183 - . gene_id "ERVLE_1p13.2f"; transcript_id "ERVLE_1p13.2f"; locus "ERVLE_1p13.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0184"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "2"; repStart "-5172"; ### MER4_1p13.2a ### chr1 rmsk gene 114360884 114362960 . + . gene_id "MER4_1p13.2a"; transcript_id "MER4_1p13.2a"; locus "MER4_1p13.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0033"; model_cov "1290"; model_pct "19.6"; chr1 rmsk exon 114360884 114361336 3184 + . gene_id "MER4_1p13.2a"; transcript_id "MER4_1p13.2a"; locus "MER4_1p13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0033"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 114361342 114361426 3340 + . gene_id "MER4_1p13.2a"; transcript_id "MER4_1p13.2a"; locus "MER4_1p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0033"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-6502"; repStart "1"; chr1 rmsk exon 114361733 114362172 3340 + . gene_id "MER4_1p13.2a"; transcript_id "MER4_1p13.2a"; locus "MER4_1p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0033"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-6038"; repStart "97"; chr1 rmsk exon 114362475 114362960 3340 + . gene_id "MER4_1p13.2a"; transcript_id "MER4_1p13.2a"; locus "MER4_1p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0033"; repClass "LTR"; repEnd "1005"; repFamily "ERV1"; repLeft "-5593"; repStart "273"; ### HARLEQUIN_1p13.2b ### chr1 rmsk gene 114362968 114369592 . - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0015"; model_cov "6280"; model_pct "91.1"; chr1 rmsk exon 114362968 114363429 3398 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 114363430 114364954 7018 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "4541"; repStart "0"; chr1 rmsk exon 114364944 114365060 710 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "4069"; repStart "-2728"; chr1 rmsk exon 114365040 114365375 2222 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "3644"; repStart "-2917"; chr1 rmsk exon 114365356 114367515 17954 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "1807"; repStart "-2947"; chr1 rmsk exon 114367506 114369149 3204 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "3144"; repFamily "ERV1"; repLeft "1795"; repStart "-3752"; chr1 rmsk exon 114369150 114369592 3203 - . gene_id "HARLEQUIN_1p13.2b"; transcript_id "HARLEQUIN_1p13.2b"; locus "HARLEQUIN_1p13.2b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0015"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_1p13.2b ### chr1 rmsk gene 114369593 114376478 . + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0034"; model_cov "6731"; model_pct "100.0"; chr1 rmsk exon 114369593 114370997 11983 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "2429"; repFamily "ERV1"; repLeft "-4169"; repStart "696"; chr1 rmsk exon 114371295 114371373 11983 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "3297"; repFamily "ERV1"; repLeft "-3301"; repStart "3165"; chr1 rmsk exon 114371614 114371823 11983 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "3656"; repFamily "ERV1"; repLeft "-2942"; repStart "3298"; chr1 rmsk exon 114372116 114373929 17330 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "5369"; repFamily "ERV1"; repLeft "-1229"; repStart "2074"; chr1 rmsk exon 114374218 114374768 17330 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "-686"; repStart "5370"; chr1 rmsk exon 114375058 114375071 17330 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "5913"; repFamily "ERV1"; repLeft "-685"; repStart "5913"; chr1 rmsk exon 114375359 114376008 17330 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0034"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "5913"; chr1 rmsk exon 114376024 114376478 3237 + . gene_id "MER4_1p13.2b"; transcript_id "MER4_1p13.2b"; locus "MER4_1p13.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0034"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_1p13.2 ### chr1 rmsk gene 114454216 114455874 . + . gene_id "MER4B_1p13.2"; transcript_id "MER4B_1p13.2"; locus "MER4B_1p13.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0019"; model_cov "1328"; model_pct "19.7"; chr1 rmsk exon 114454216 114454403 4302 + . gene_id "MER4B_1p13.2"; transcript_id "MER4B_1p13.2"; locus "MER4B_1p13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0019"; repClass "LTR"; repEnd "3282"; repFamily "ERV1"; repLeft "-3476"; repStart "3094"; chr1 rmsk exon 114454691 114455874 4302 + . gene_id "MER4B_1p13.2"; transcript_id "MER4B_1p13.2"; locus "MER4B_1p13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0019"; repClass "LTR"; repEnd "4423"; repFamily "ERV1"; repLeft "-2335"; repStart "3283"; ### MER101_1p13.2 ### chr1 rmsk gene 114782850 114783666 . - . gene_id "MER101_1p13.2"; transcript_id "MER101_1p13.2"; locus "MER101_1p13.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0025"; model_cov "1382"; model_pct "20.8"; chr1 rmsk exon 114782850 114783666 1735 - . gene_id "MER101_1p13.2"; transcript_id "MER101_1p13.2"; locus "MER101_1p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0025"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "2389"; repStart "-2868"; ### LTR57_1p13.2 ### chr1 rmsk gene 114793614 114795154 . - . gene_id "LTR57_1p13.2"; transcript_id "LTR57_1p13.2"; locus "LTR57_1p13.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0010"; model_cov "1275"; model_pct "23.9"; chr1 rmsk exon 114793614 114794144 5788 - . gene_id "LTR57_1p13.2"; transcript_id "LTR57_1p13.2"; locus "LTR57_1p13.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0010"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "1065"; repStart "-3749"; chr1 rmsk exon 114794435 114795154 5788 - . gene_id "LTR57_1p13.2"; transcript_id "LTR57_1p13.2"; locus "LTR57_1p13.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0010"; repClass "LTR"; repEnd "1064"; repFamily "ERVL"; repLeft "318"; repStart "-4279"; ### MER61_1p13.2a ### chr1 rmsk gene 114829874 114832914 . - . gene_id "MER61_1p13.2a"; transcript_id "MER61_1p13.2a"; locus "MER61_1p13.2a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0017"; model_cov "2207"; model_pct "42.3"; chr1 rmsk exon 114829874 114830145 1708 - . gene_id "MER61_1p13.2a"; transcript_id "MER61_1p13.2a"; locus "MER61_1p13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0017"; repClass "LTR"; repEnd "3347"; repFamily "ERV1"; repLeft "3066"; repStart "-1870"; chr1 rmsk exon 114830284 114831848 9865 - . gene_id "MER61_1p13.2a"; transcript_id "MER61_1p13.2a"; locus "MER61_1p13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0017"; repClass "LTR"; repEnd "2924"; repFamily "ERV1"; repLeft "1320"; repStart "-2293"; chr1 rmsk exon 114831843 114832118 2458 - . gene_id "MER61_1p13.2a"; transcript_id "MER61_1p13.2a"; locus "MER61_1p13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0017"; repClass "LTR"; repEnd "776"; repFamily "ERV1"; repLeft "454"; repStart "-4441"; chr1 rmsk exon 114832579 114832914 2147 - . gene_id "MER61_1p13.2a"; transcript_id "MER61_1p13.2a"; locus "MER61_1p13.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0017"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_1p13.2b ### chr1 rmsk gene 114896810 114902666 . - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0019"; model_cov "4953"; model_pct "94.9"; chr1 rmsk exon 114896810 114897105 1530 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0019"; repClass "LTR"; repEnd "313"; repFamily "ERV1"; repLeft "9"; repStart "-28"; chr1 rmsk exon 114897119 114900287 26116 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0019"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1970"; repStart "0"; chr1 rmsk exon 114900581 114901130 26116 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0019"; repClass "LTR"; repEnd "1969"; repFamily "ERV1"; repLeft "1396"; repStart "-3248"; chr1 rmsk exon 114901140 114901450 2102 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0019"; repClass "LTR"; repEnd "1272"; repFamily "ERV1"; repLeft "958"; repStart "-3945"; chr1 rmsk exon 114901451 114902331 4136 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0019"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "21"; repStart "-4377"; chr1 rmsk exon 114902360 114902666 1374 - . gene_id "MER61_1p13.2b"; transcript_id "MER61_1p13.2b"; locus "MER61_1p13.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0019"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "-85"; repStart "-29"; ### HERVL_1p13.2c ### chr1 rmsk gene 115005286 115011033 . - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_0068"; model_cov "3619"; model_pct "64.0"; chr1 rmsk exon 115005286 115005718 3292 - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0068"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "25"; repStart "0"; chr1 rmsk exon 115006010 115006033 3292 - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0068"; repClass "LTR"; repEnd "24"; repFamily "ERVL"; repLeft "1"; repStart "-429"; chr1 rmsk exon 115006034 115009645 27170 - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0068"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2035"; repStart "0"; chr1 rmsk exon 115009645 115010547 7100 - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0068"; prev_strand "+"; repClass "LTR"; repEnd "1892"; repFamily "ERVL"; repLeft "-3762"; repStart "946"; chr1 rmsk exon 115010864 115011033 7100 - . gene_id "HERVL_1p13.2c"; transcript_id "HERVL_1p13.2c"; locus "HERVL_1p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0068"; prev_strand "+"; repClass "LTR"; repEnd "2046"; repFamily "ERVL"; repLeft "-3608"; repStart "1893"; ### ERVL_1p13.2 ### chr1 rmsk gene 115389845 115391814 . + . gene_id "ERVL_1p13.2"; transcript_id "ERVL_1p13.2"; locus "ERVL_1p13.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0016"; model_cov "1410"; model_pct "24.5"; chr1 rmsk exon 115389845 115391244 8347 + . gene_id "ERVL_1p13.2"; transcript_id "ERVL_1p13.2"; locus "ERVL_1p13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0016"; repClass "LTR"; repEnd "5750"; repFamily "ERVL"; repLeft "-7"; repStart "4340"; chr1 rmsk exon 115391252 115391814 2646 + . gene_id "ERVL_1p13.2"; transcript_id "ERVL_1p13.2"; locus "ERVL_1p13.2"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0016"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVH_1p13.1a ### chr1 rmsk gene 115509141 115515447 . - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0059"; model_cov "5798"; model_pct "75.2"; chr1 rmsk exon 115509141 115509547 1872 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; chr1 rmsk exon 115509548 115510102 3592 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr1 rmsk exon 115510096 115511002 5904 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5108"; repStart "-1697"; chr1 rmsk exon 115511002 115514873 15086 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "6201"; repFamily "ERV1"; repLeft "2041"; repStart "-1512"; chr1 rmsk exon 115514863 115515028 728 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "175"; repFamily "ERV1"; repLeft "1"; repStart "-7538"; chr1 rmsk exon 115515029 115515447 2042 - . gene_id "HERVH_1p13.1a"; transcript_id "HERVH_1p13.1a"; locus "HERVH_1p13.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0059"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_1p13.1 ### chr1 rmsk gene 115587187 115593011 . + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0020"; model_cov "4997"; model_pct "95.8"; chr1 rmsk exon 115587187 115587620 2896 + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0020"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 115587621 115587861 1067 + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0020"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "-4985"; repStart "1"; chr1 rmsk exon 115587839 115588360 2624 + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0020"; repClass "LTR"; repEnd "850"; repFamily "ERV1"; repLeft "-4367"; repStart "343"; chr1 rmsk exon 115588354 115592576 26815 + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0020"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "958"; chr1 rmsk exon 115592577 115593011 2986 + . gene_id "MER61_1p13.1"; transcript_id "MER61_1p13.1"; locus "MER61_1p13.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0020"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_1p13.1 ### chr1 rmsk gene 115596632 115598591 . - . gene_id "ERVL_1p13.1"; transcript_id "ERVL_1p13.1"; locus "ERVL_1p13.1"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0017"; model_cov "1085"; model_pct "18.8"; chr1 rmsk exon 115596632 115597111 2159 - . gene_id "ERVL_1p13.1"; transcript_id "ERVL_1p13.1"; locus "ERVL_1p13.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0017"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 115597112 115597417 1596 - . gene_id "ERVL_1p13.1"; transcript_id "ERVL_1p13.1"; locus "ERVL_1p13.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0017"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5448"; repStart "0"; chr1 rmsk exon 115597481 115598246 4641 - . gene_id "ERVL_1p13.1"; transcript_id "ERVL_1p13.1"; locus "ERVL_1p13.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0017"; repClass "LTR"; repEnd "5328"; repFamily "ERVL"; repLeft "4552"; repStart "-429"; chr1 rmsk exon 115598524 115598591 433 - . gene_id "ERVL_1p13.1"; transcript_id "ERVL_1p13.1"; locus "ERVL_1p13.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0017"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "1"; repStart "-488"; ### HERVH_1p13.1b ### chr1 rmsk gene 116862347 116868395 . + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0060"; model_cov "5094"; model_pct "66.0"; chr1 rmsk exon 116862347 116862811 4004 + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0060"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 116862812 116863239 1928 + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0060"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr1 rmsk exon 116863306 116867607 27617 + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0060"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "800"; chr1 rmsk exon 116867613 116868044 2774 + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0060"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7284"; chr1 rmsk exon 116868045 116868395 1880 + . gene_id "HERVH_1p13.1b"; transcript_id "HERVH_1p13.1b"; locus "HERVH_1p13.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0060"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "15"; ### HERVL18_1p12 ### chr1 rmsk gene 117815334 117822010 . - . gene_id "HERVL18_1p12"; transcript_id "HERVL18_1p12"; locus "HERVL18_1p12"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0007"; model_cov "6046"; model_pct "100.0"; chr1 rmsk exon 117815334 117815662 2284 - . gene_id "HERVL18_1p12"; transcript_id "HERVL18_1p12"; locus "HERVL18_1p12"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0007"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr1 rmsk exon 117815666 117821685 39325 - . gene_id "HERVL18_1p12"; transcript_id "HERVL18_1p12"; locus "HERVL18_1p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0007"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 117821693 117822010 2310 - . gene_id "HERVL18_1p12"; transcript_id "HERVL18_1p12"; locus "HERVL18_1p12"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0007"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "1"; repStart "-13"; ### HERV9_1p12 ### chr1 rmsk gene 118225552 118233433 . + . gene_id "HERV9_1p12"; transcript_id "HERV9_1p12"; locus "HERV9_1p12"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0012"; model_cov "6878"; model_pct "81.5"; chr1 rmsk exon 118225552 118226083 3242 + . gene_id "HERV9_1p12"; transcript_id "HERV9_1p12"; locus "HERV9_1p12"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0012"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "34"; chr1 rmsk exon 118226104 118231410 32191 + . gene_id "HERV9_1p12"; transcript_id "HERV9_1p12"; locus "HERV9_1p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0012"; repClass "LTR"; repEnd "5429"; repFamily "ERV1"; repLeft "-3007"; repStart "29"; chr1 rmsk exon 118231390 118232872 10697 + . gene_id "HERV9_1p12"; transcript_id "HERV9_1p12"; locus "HERV9_1p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0012"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6958"; chr1 rmsk exon 118232873 118233433 3885 + . gene_id "HERV9_1p12"; transcript_id "HERV9_1p12"; locus "HERV9_1p12"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0012"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1p12a ### chr1 rmsk gene 118335374 118336510 . - . gene_id "ERVLE_1p12a"; transcript_id "ERVLE_1p12a"; locus "ERVLE_1p12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0188"; model_cov "1185"; model_pct "20.9"; chr1 rmsk exon 118335374 118335973 1276 - . gene_id "ERVLE_1p12a"; transcript_id "ERVLE_1p12a"; locus "ERVLE_1p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0188"; repClass "LTR"; repEnd "3871"; repFamily "ERVL"; repLeft "3255"; repStart "-1796"; chr1 rmsk exon 118335965 118336510 1071 - . gene_id "ERVLE_1p12a"; transcript_id "ERVLE_1p12a"; locus "ERVLE_1p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0188"; repClass "LTR"; repEnd "3265"; repFamily "ERVL"; repLeft "2696"; repStart "-2402"; ### ERV316A3_1p12 ### chr1 rmsk gene 118345271 118346978 . + . gene_id "ERV316A3_1p12"; transcript_id "ERV316A3_1p12"; locus "ERV316A3_1p12"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0104"; model_cov "877"; model_pct "16.8"; chr1 rmsk exon 118345271 118346163 2090 + . gene_id "ERV316A3_1p12"; transcript_id "ERV316A3_1p12"; locus "ERV316A3_1p12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0104"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "-1122"; repStart "3227"; chr1 rmsk exon 118346639 118346978 1225 + . gene_id "ERV316A3_1p12"; transcript_id "ERV316A3_1p12"; locus "ERV316A3_1p12"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0104"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-8"; repStart "66"; ### HERVW_1p12a ### chr1 rmsk gene 119168299 119171363 . - . gene_id "HERVW_1p12a"; transcript_id "HERVW_1p12a"; locus "HERVW_1p12a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0012"; model_cov "2760"; model_pct "32.0"; chr1 rmsk exon 119168299 119168623 2675 - . gene_id "HERVW_1p12a"; transcript_id "HERVW_1p12a"; locus "HERVW_1p12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0012"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr1 rmsk exon 119168624 119168922 2365 - . gene_id "HERVW_1p12a"; transcript_id "HERVW_1p12a"; locus "HERVW_1p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0012"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr1 rmsk exon 119168902 119168940 283 - . gene_id "HERVW_1p12a"; transcript_id "HERVW_1p12a"; locus "HERVW_1p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0012"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr1 rmsk exon 119168935 119171363 20914 - . gene_id "HERVW_1p12a"; transcript_id "HERVW_1p12a"; locus "HERVW_1p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0012"; repClass "LTR"; repEnd "6018"; repFamily "ERV1"; repLeft "3587"; repStart "-2608"; ### HERVW_1p12b ### chr1 rmsk gene 119180393 119183271 . - . gene_id "HERVW_1p12b"; transcript_id "HERVW_1p12b"; locus "HERVW_1p12b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0013"; model_cov "2388"; model_pct "27.7"; chr1 rmsk exon 119180393 119181234 6711 - . gene_id "HERVW_1p12b"; transcript_id "HERVW_1p12b"; locus "HERVW_1p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0013"; repClass "LTR"; repEnd "3588"; repFamily "ERV1"; repLeft "2739"; repStart "-5038"; chr1 rmsk exon 119181237 119182807 10358 - . gene_id "HERVW_1p12b"; transcript_id "HERVW_1p12b"; locus "HERVW_1p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0013"; repClass "LTR"; repEnd "1540"; repFamily "ERV1"; repLeft "1"; repStart "-7086"; chr1 rmsk exon 119182808 119183271 1941 - . gene_id "HERVW_1p12b"; transcript_id "HERVW_1p12b"; locus "HERVW_1p12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0013"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "253"; repStart "0"; ### MER4_1p12a ### chr1 rmsk gene 119342762 119344705 . - . gene_id "MER4_1p12a"; transcript_id "MER4_1p12a"; locus "MER4_1p12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0035"; model_cov "1945"; model_pct "29.5"; chr1 rmsk exon 119342762 119343164 2464 - . gene_id "MER4_1p12a"; transcript_id "MER4_1p12a"; locus "MER4_1p12a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0035"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "55"; repStart "-1"; chr1 rmsk exon 119343193 119343893 9090 - . gene_id "MER4_1p12a"; transcript_id "MER4_1p12a"; locus "MER4_1p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0035"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5894"; repStart "0"; chr1 rmsk exon 119343934 119344705 9090 - . gene_id "MER4_1p12a"; transcript_id "MER4_1p12a"; locus "MER4_1p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0035"; repClass "LTR"; repEnd "5893"; repFamily "ERV1"; repLeft "4652"; repStart "-705"; ### MER4_1p12b ### chr1 rmsk gene 119344853 119349337 . - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0036"; model_cov "4943"; model_pct "74.9"; chr1 rmsk exon 119344853 119346582 9090 - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0036"; repClass "LTR"; repEnd "5893"; repFamily "ERV1"; repLeft "3106"; repStart "-705"; chr1 rmsk exon 119346822 119347458 4291 - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0036"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1820"; repStart "-4103"; chr1 rmsk exon 119347462 119348405 5731 - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0036"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "34"; repStart "-5574"; chr1 rmsk exon 119348373 119348911 3122 - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0036"; repClass "LTR"; repEnd "-1180"; repFamily "ERV1"; repLeft "-1671"; repStart "-7778"; chr1 rmsk exon 119348915 119349337 2325 - . gene_id "MER4_1p12b"; transcript_id "MER4_1p12b"; locus "MER4_1p12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0036"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### PRIMA4_1p12a ### chr1 rmsk gene 119423264 119431906 . - . gene_id "PRIMA4_1p12a"; transcript_id "PRIMA4_1p12a"; locus "PRIMA4_1p12a"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0005"; model_cov "7701"; model_pct "93.1"; chr1 rmsk exon 119423264 119423838 4279 - . gene_id "PRIMA4_1p12a"; transcript_id "PRIMA4_1p12a"; locus "PRIMA4_1p12a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0005"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr1 rmsk exon 119423840 119428766 37750 - . gene_id "PRIMA4_1p12a"; transcript_id "PRIMA4_1p12a"; locus "PRIMA4_1p12a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0005"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "3271"; repStart "0"; chr1 rmsk exon 119428761 119431316 16069 - . gene_id "PRIMA4_1p12a"; transcript_id "PRIMA4_1p12a"; locus "PRIMA4_1p12a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0005"; repClass "LTR"; repEnd "2703"; repFamily "ERV1"; repLeft "1"; repStart "-5567"; chr1 rmsk exon 119431317 119431906 4616 - . gene_id "PRIMA4_1p12a"; transcript_id "PRIMA4_1p12a"; locus "PRIMA4_1p12a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0005"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP2_1p12 ### chr1 rmsk gene 119471699 119472820 . - . gene_id "HUERSP2_1p12"; transcript_id "HUERSP2_1p12"; locus "HUERSP2_1p12"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0008"; model_cov "510"; model_pct "16.5"; chr1 rmsk exon 119471699 119472359 3496 - . gene_id "HUERSP2_1p12"; transcript_id "HUERSP2_1p12"; locus "HUERSP2_1p12"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0008"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "207"; repStart "0"; chr1 rmsk exon 119472360 119472820 2052 - . gene_id "HUERSP2_1p12"; transcript_id "HUERSP2_1p12"; locus "HUERSP2_1p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0008"; repClass "LTR"; repEnd "2834"; repFamily "ERV1"; repLeft "2324"; repStart "-254"; ### LTR19_1p12 ### chr1 rmsk gene 119483723 119489581 . - . gene_id "LTR19_1p12"; transcript_id "LTR19_1p12"; locus "LTR19_1p12"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0003"; model_cov "6625"; model_pct "100.0"; chr1 rmsk exon 119483723 119484188 2895 - . gene_id "LTR19_1p12"; transcript_id "LTR19_1p12"; locus "LTR19_1p12"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0003"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 119484189 119485740 6473 - . gene_id "LTR19_1p12"; transcript_id "LTR19_1p12"; locus "LTR19_1p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0003"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "1970"; repStart "-524"; chr1 rmsk exon 119485737 119489123 16074 - . gene_id "LTR19_1p12"; transcript_id "LTR19_1p12"; locus "LTR19_1p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0003"; repClass "LTR"; repEnd "3534"; repFamily "ERV1"; repLeft "1"; repStart "-2052"; chr1 rmsk exon 119489124 119489581 2706 - . gene_id "LTR19_1p12"; transcript_id "LTR19_1p12"; locus "LTR19_1p12"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0003"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_1p12 ### chr1 rmsk gene 120001503 120003474 . + . gene_id "HERVL_1p12"; transcript_id "HERVL_1p12"; locus "HERVL_1p12"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0070"; model_cov "1469"; model_pct "26.0"; chr1 rmsk exon 120001503 120002965 10508 + . gene_id "HERVL_1p12"; transcript_id "HERVL_1p12"; locus "HERVL_1p12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0070"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4185"; chr1 rmsk exon 120002966 120003362 2866 + . gene_id "HERVL_1p12"; transcript_id "HERVL_1p12"; locus "HERVL_1p12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0070"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr1 rmsk exon 120003424 120003474 277 + . gene_id "HERVL_1p12"; transcript_id "HERVL_1p12"; locus "HERVL_1p12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0070"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### PRIMA4_1p12b ### chr1 rmsk gene 120348435 120350434 . + . gene_id "PRIMA4_1p12b"; transcript_id "PRIMA4_1p12b"; locus "PRIMA4_1p12b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0006"; model_cov "1547"; model_pct "18.7"; chr1 rmsk exon 120348435 120348763 2716 + . gene_id "PRIMA4_1p12b"; transcript_id "PRIMA4_1p12b"; locus "PRIMA4_1p12b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0006"; repClass "LTR"; repEnd "5159"; repFamily "ERV1"; repLeft "-3111"; repStart "4838"; chr1 rmsk exon 120349062 120350070 2716 + . gene_id "PRIMA4_1p12b"; transcript_id "PRIMA4_1p12b"; locus "PRIMA4_1p12b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0006"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "-2104"; repStart "5160"; chr1 rmsk exon 120350220 120350434 2716 + . gene_id "PRIMA4_1p12b"; transcript_id "PRIMA4_1p12b"; locus "PRIMA4_1p12b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0006"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "-1883"; repStart "6167"; ### ERVLE_1p12b ### chr1 rmsk gene 120372186 120372983 . + . gene_id "ERVLE_1p12b"; transcript_id "ERVLE_1p12b"; locus "ERVLE_1p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0192"; model_cov "709"; model_pct "12.5"; chr1 rmsk exon 120372186 120372328 506 + . gene_id "ERVLE_1p12b"; transcript_id "ERVLE_1p12b"; locus "ERVLE_1p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0192"; repClass "LTR"; repEnd "4651"; repFamily "ERVL"; repLeft "-1016"; repStart "4514"; chr1 rmsk exon 120372451 120372983 506 + . gene_id "ERVLE_1p12b"; transcript_id "ERVLE_1p12b"; locus "ERVLE_1p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0192"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-443"; repStart "4652"; ### HERVL_1p11.2 ### chr1 rmsk gene 120787088 120789061 . - . gene_id "HERVL_1p11.2"; transcript_id "HERVL_1p11.2"; locus "HERVL_1p11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0071"; model_cov "1469"; model_pct "26.0"; chr1 rmsk exon 120787088 120787144 282 - . gene_id "HERVL_1p11.2"; transcript_id "HERVL_1p11.2"; locus "HERVL_1p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0071"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "381"; repStart "0"; chr1 rmsk exon 120787177 120787596 3105 - . gene_id "HERVL_1p11.2"; transcript_id "HERVL_1p11.2"; locus "HERVL_1p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0071"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-110"; repStart "-54"; chr1 rmsk exon 120787597 120789061 11301 - . gene_id "HERVL_1p11.2"; transcript_id "HERVL_1p11.2"; locus "HERVL_1p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0071"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4185"; repStart "0"; ### ERVLE_1p11.2 ### chr1 rmsk gene 120887636 120890955 . + . gene_id "ERVLE_1p11.2"; transcript_id "ERVLE_1p11.2"; locus "ERVLE_1p11.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0194"; model_cov "1181"; model_pct "20.8"; chr1 rmsk exon 120887636 120887739 1302 + . gene_id "ERVLE_1p11.2"; transcript_id "ERVLE_1p11.2"; locus "ERVLE_1p11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0194"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1849"; repStart "3698"; chr1 rmsk exon 120888052 120889024 1302 + . gene_id "ERVLE_1p11.2"; transcript_id "ERVLE_1p11.2"; locus "ERVLE_1p11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0194"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "-856"; repStart "3819"; chr1 rmsk exon 120890867 120890955 330 + . gene_id "ERVLE_1p11.2"; transcript_id "ERVLE_1p11.2"; locus "ERVLE_1p11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0194"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-477"; repStart "5121"; ### HERVH_1p11.2 ### chr1 rmsk gene 120955899 120957584 . - . gene_id "HERVH_1p11.2"; transcript_id "HERVH_1p11.2"; locus "HERVH_1p11.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0061"; model_cov "1255"; model_pct "16.3"; chr1 rmsk exon 120955899 120956341 2870 - . gene_id "HERVH_1p11.2"; transcript_id "HERVH_1p11.2"; locus "HERVH_1p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0061"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 120956342 120956717 2402 - . gene_id "HERVH_1p11.2"; transcript_id "HERVH_1p11.2"; locus "HERVH_1p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0061"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 120956718 120956938 1316 - . gene_id "HERVH_1p11.2"; transcript_id "HERVH_1p11.2"; locus "HERVH_1p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0061"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 120956940 120957584 4584 - . gene_id "HERVH_1p11.2"; transcript_id "HERVH_1p11.2"; locus "HERVH_1p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0061"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4502"; repStart "-2564"; ### MER4_1p11.2 ### chr1 rmsk gene 120957935 120959458 . - . gene_id "MER4_1p11.2"; transcript_id "MER4_1p11.2"; locus "MER4_1p11.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0037"; model_cov "942"; model_pct "14.3"; chr1 rmsk exon 120957935 120958076 747 - . gene_id "MER4_1p11.2"; transcript_id "MER4_1p11.2"; locus "MER4_1p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0037"; repClass "LTR"; repEnd "1003"; repFamily "ERV1"; repLeft "865"; repStart "-5595"; chr1 rmsk exon 120958561 120958812 912 - . gene_id "MER4_1p11.2"; transcript_id "MER4_1p11.2"; locus "MER4_1p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0037"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "506"; repStart "-5761"; chr1 rmsk exon 120958947 120959401 2698 - . gene_id "MER4_1p11.2"; transcript_id "MER4_1p11.2"; locus "MER4_1p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0037"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "-6124"; chr1 rmsk exon 120959404 120959458 350 - . gene_id "MER4_1p11.2"; transcript_id "MER4_1p11.2"; locus "MER4_1p11.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0037"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "412"; repStart "0"; ### HERVL40_1p11.2 ### chr1 rmsk gene 121054903 121055781 . - . gene_id "HERVL40_1p11.2"; transcript_id "HERVL40_1p11.2"; locus "HERVL40_1p11.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0013"; model_cov "711"; model_pct "12.9"; chr1 rmsk exon 121054903 121054991 537 - . gene_id "HERVL40_1p11.2"; transcript_id "HERVL40_1p11.2"; locus "HERVL40_1p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0013"; repClass "LTR"; repEnd "3599"; repFamily "ERVL"; repLeft "3509"; repStart "-1931"; chr1 rmsk exon 121055018 121055305 1186 - . gene_id "HERVL40_1p11.2"; transcript_id "HERVL40_1p11.2"; locus "HERVL40_1p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0013"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "2050"; repStart "-3202"; chr1 rmsk exon 121055306 121055521 401 - . gene_id "HERVL40_1p11.2"; transcript_id "HERVL40_1p11.2"; locus "HERVL40_1p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0013"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1393"; repStart "-3913"; chr1 rmsk exon 121055665 121055781 253 - . gene_id "HERVL40_1p11.2"; transcript_id "HERVL40_1p11.2"; locus "HERVL40_1p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0013"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "1098"; repStart "-4313"; ### ERV316A3_1p11.2 ### chr1 rmsk gene 121484168 121489258 . + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0105"; model_cov "3503"; model_pct "67.0"; chr1 rmsk exon 121484168 121484914 1337 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "1628"; repFamily "ERVL"; repLeft "-3598"; repStart "850"; chr1 rmsk exon 121484935 121485413 1227 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "2354"; repFamily "ERVL"; repLeft "-2872"; repStart "1893"; chr1 rmsk exon 121485805 121486014 520 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "2972"; repFamily "ERVL"; repLeft "-2254"; repStart "2769"; chr1 rmsk exon 121486085 121487382 1816 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "3987"; repFamily "ERVL"; repLeft "-1239"; repStart "2551"; chr1 rmsk exon 121487786 121488211 1214 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "-707"; repStart "4100"; chr1 rmsk exon 121488445 121488554 360 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "-186"; repStart "4913"; chr1 rmsk exon 121489172 121489258 360 + . gene_id "ERV316A3_1p11.2"; transcript_id "ERV316A3_1p11.2"; locus "ERV316A3_1p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0105"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "-106"; repStart "5041"; ### ERVLE_1q21.1a ### chr1 rmsk gene 143627131 143627714 . - . gene_id "ERVLE_1q21.1a"; transcript_id "ERVLE_1q21.1a"; locus "ERVLE_1q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0198"; model_cov "599"; model_pct "10.6"; chr1 rmsk exon 143627131 143627475 752 - . gene_id "ERVLE_1q21.1a"; transcript_id "ERVLE_1q21.1a"; locus "ERVLE_1q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0198"; repClass "LTR"; repEnd "1897"; repFamily "ERVL"; repLeft "1518"; repStart "-3770"; chr1 rmsk exon 143627493 143627714 565 - . gene_id "ERVLE_1q21.1a"; transcript_id "ERVLE_1q21.1a"; locus "ERVLE_1q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0198"; repClass "LTR"; repEnd "1462"; repFamily "ERVL"; repLeft "1242"; repStart "-4205"; ### PRIMA4_1q21.1a ### chr1 rmsk gene 143706462 143708110 . - . gene_id "PRIMA4_1q21.1a"; transcript_id "PRIMA4_1q21.1a"; locus "PRIMA4_1q21.1a"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0007"; model_cov "1338"; model_pct "16.2"; chr1 rmsk exon 143706462 143707472 2894 - . gene_id "PRIMA4_1q21.1a"; transcript_id "PRIMA4_1q21.1a"; locus "PRIMA4_1q21.1a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0007"; repClass "LTR"; repEnd "6177"; repFamily "ERV1"; repLeft "5145"; repStart "-2093"; chr1 rmsk exon 143707778 143708110 2894 - . gene_id "PRIMA4_1q21.1a"; transcript_id "PRIMA4_1q21.1a"; locus "PRIMA4_1q21.1a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0007"; repClass "LTR"; repEnd "5144"; repFamily "ERV1"; repLeft "4838"; repStart "-3126"; ### HERVL40_1q21.1 ### chr1 rmsk gene 143842027 143842645 . - . gene_id "HERVL40_1q21.1"; transcript_id "HERVL40_1q21.1"; locus "HERVL40_1q21.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0014"; model_cov "592"; model_pct "10.7"; chr1 rmsk exon 143842027 143842115 550 - . gene_id "HERVL40_1q21.1"; transcript_id "HERVL40_1q21.1"; locus "HERVL40_1q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0014"; repClass "LTR"; repEnd "3599"; repFamily "ERVL"; repLeft "3509"; repStart "-1931"; chr1 rmsk exon 143842142 143842429 1212 - . gene_id "HERVL40_1q21.1"; transcript_id "HERVL40_1q21.1"; locus "HERVL40_1q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0014"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "2050"; repStart "-3202"; chr1 rmsk exon 143842430 143842645 398 - . gene_id "HERVL40_1q21.1"; transcript_id "HERVL40_1q21.1"; locus "HERVL40_1q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0014"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1393"; repStart "-3913"; ### ERVLB4_1q21.1a ### chr1 rmsk gene 144120483 144121627 . - . gene_id "ERVLB4_1q21.1a"; transcript_id "ERVLB4_1q21.1a"; locus "ERVLB4_1q21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0068"; model_cov "1019"; model_pct "17.8"; chr1 rmsk exon 144120483 144121289 3488 - . gene_id "ERVLB4_1q21.1a"; transcript_id "ERVLB4_1q21.1a"; locus "ERVLB4_1q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0068"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr1 rmsk exon 144121410 144121597 1046 - . gene_id "ERVLB4_1q21.1a"; transcript_id "ERVLB4_1q21.1a"; locus "ERVLB4_1q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0068"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; chr1 rmsk exon 144121609 144121627 293 - . gene_id "ERVLB4_1q21.1a"; transcript_id "ERVLB4_1q21.1a"; locus "ERVLB4_1q21.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0068"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "339"; repStart "-41"; ### ERVLE_1q21.1b ### chr1 rmsk gene 144372445 144375748 . - . gene_id "ERVLE_1q21.1b"; transcript_id "ERVLE_1q21.1b"; locus "ERVLE_1q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0199"; model_cov "1289"; model_pct "22.7"; chr1 rmsk exon 144372445 144372538 347 - . gene_id "ERVLE_1q21.1b"; transcript_id "ERVLE_1q21.1b"; locus "ERVLE_1q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0199"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "5121"; repStart "-472"; chr1 rmsk exon 144374258 144375332 1645 - . gene_id "ERVLE_1q21.1b"; transcript_id "ERVLE_1q21.1b"; locus "ERVLE_1q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0199"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "3819"; repStart "-753"; chr1 rmsk exon 144375645 144375748 1645 - . gene_id "ERVLE_1q21.1b"; transcript_id "ERVLE_1q21.1b"; locus "ERVLE_1q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0199"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "3698"; repStart "-1849"; ### PRIMA4_1q21.1b ### chr1 rmsk gene 144528574 144530574 . - . gene_id "PRIMA4_1q21.1b"; transcript_id "PRIMA4_1q21.1b"; locus "PRIMA4_1q21.1b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0008"; model_cov "1547"; model_pct "18.7"; chr1 rmsk exon 144528574 144528788 3255 - . gene_id "PRIMA4_1q21.1b"; transcript_id "PRIMA4_1q21.1b"; locus "PRIMA4_1q21.1b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0008"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6167"; repStart "-1883"; chr1 rmsk exon 144528938 144529950 3255 - . gene_id "PRIMA4_1q21.1b"; transcript_id "PRIMA4_1q21.1b"; locus "PRIMA4_1q21.1b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0008"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "5160"; repStart "-2104"; chr1 rmsk exon 144530246 144530574 3255 - . gene_id "PRIMA4_1q21.1b"; transcript_id "PRIMA4_1q21.1b"; locus "PRIMA4_1q21.1b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0008"; repClass "LTR"; repEnd "5159"; repFamily "ERV1"; repLeft "4838"; repStart "-3111"; ### ERVLE_1q21.1c ### chr1 rmsk gene 144590775 144594077 . + . gene_id "ERVLE_1q21.1c"; transcript_id "ERVLE_1q21.1c"; locus "ERVLE_1q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0202"; model_cov "1181"; model_pct "20.8"; chr1 rmsk exon 144590775 144590878 1277 + . gene_id "ERVLE_1q21.1c"; transcript_id "ERVLE_1q21.1c"; locus "ERVLE_1q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0202"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1849"; repStart "3698"; chr1 rmsk exon 144591191 144592162 1277 + . gene_id "ERVLE_1q21.1c"; transcript_id "ERVLE_1q21.1c"; locus "ERVLE_1q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0202"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "-856"; repStart "3819"; chr1 rmsk exon 144593989 144594077 330 + . gene_id "ERVLE_1q21.1c"; transcript_id "ERVLE_1q21.1c"; locus "ERVLE_1q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0202"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-477"; repStart "5121"; ### ERVLB4_1q21.1b ### chr1 rmsk gene 144843846 144844990 . + . gene_id "ERVLB4_1q21.1b"; transcript_id "ERVLB4_1q21.1b"; locus "ERVLB4_1q21.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0069"; model_cov "1019"; model_pct "17.8"; chr1 rmsk exon 144843846 144843864 287 + . gene_id "ERVLB4_1q21.1b"; transcript_id "ERVLB4_1q21.1b"; locus "ERVLB4_1q21.1b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0069"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "-41"; repStart "339"; chr1 rmsk exon 144843876 144844063 1047 + . gene_id "ERVLB4_1q21.1b"; transcript_id "ERVLB4_1q21.1b"; locus "ERVLB4_1q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0069"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr1 rmsk exon 144844184 144844990 3470 + . gene_id "ERVLB4_1q21.1b"; transcript_id "ERVLB4_1q21.1b"; locus "ERVLB4_1q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0069"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### ERVLE_1q21.1d ### chr1 rmsk gene 145240985 145244282 . - . gene_id "ERVLE_1q21.1d"; transcript_id "ERVLE_1q21.1d"; locus "ERVLE_1q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0203"; model_cov "1394"; model_pct "24.6"; chr1 rmsk exon 145240985 145241078 341 - . gene_id "ERVLE_1q21.1d"; transcript_id "ERVLE_1q21.1d"; locus "ERVLE_1q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0203"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "5121"; repStart "-472"; chr1 rmsk exon 145242793 145243867 1611 - . gene_id "ERVLE_1q21.1d"; transcript_id "ERVLE_1q21.1d"; locus "ERVLE_1q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0203"; repClass "LTR"; repEnd "4929"; repFamily "ERVL"; repLeft "3729"; repStart "-738"; chr1 rmsk exon 145244179 145244282 1611 - . gene_id "ERVLE_1q21.1d"; transcript_id "ERVLE_1q21.1d"; locus "ERVLE_1q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0203"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "3698"; repStart "-1849"; ### PRIMA4_1q21.1c ### chr1 rmsk gene 145472066 145473413 . - . gene_id "PRIMA4_1q21.1c"; transcript_id "PRIMA4_1q21.1c"; locus "PRIMA4_1q21.1c"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0009"; model_cov "1197"; model_pct "14.5"; chr1 rmsk exon 145472066 145472280 1872 - . gene_id "PRIMA4_1q21.1c"; transcript_id "PRIMA4_1q21.1c"; locus "PRIMA4_1q21.1c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0009"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6162"; repStart "-1883"; chr1 rmsk exon 145472438 145473413 1872 - . gene_id "PRIMA4_1q21.1c"; transcript_id "PRIMA4_1q21.1c"; locus "PRIMA4_1q21.1c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0009"; repClass "LTR"; repEnd "6161"; repFamily "ERV1"; repLeft "5189"; repStart "-2109"; ### HERVL_1q21.1a ### chr1 rmsk gene 146160946 146162896 . + . gene_id "HERVL_1q21.1a"; transcript_id "HERVL_1q21.1a"; locus "HERVL_1q21.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0075"; model_cov "1469"; model_pct "26.0"; chr1 rmsk exon 146160946 146162387 11172 + . gene_id "HERVL_1q21.1a"; transcript_id "HERVL_1q21.1a"; locus "HERVL_1q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0075"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4185"; chr1 rmsk exon 146162388 146162807 3077 + . gene_id "HERVL_1q21.1a"; transcript_id "HERVL_1q21.1a"; locus "HERVL_1q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0075"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-54"; repStart "-110"; chr1 rmsk exon 146162840 146162896 300 + . gene_id "HERVL_1q21.1a"; transcript_id "HERVL_1q21.1a"; locus "HERVL_1q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0075"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "386"; ### ERVLE_1q21.1e ### chr1 rmsk gene 146343581 146346899 . - . gene_id "ERVLE_1q21.1e"; transcript_id "ERVLE_1q21.1e"; locus "ERVLE_1q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0205"; model_cov "1183"; model_pct "20.9"; chr1 rmsk exon 146343581 146343669 356 - . gene_id "ERVLE_1q21.1e"; transcript_id "ERVLE_1q21.1e"; locus "ERVLE_1q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0205"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "5121"; repStart "-477"; chr1 rmsk exon 146345504 146346483 1642 - . gene_id "ERVLE_1q21.1e"; transcript_id "ERVLE_1q21.1e"; locus "ERVLE_1q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0205"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "3820"; repStart "-854"; chr1 rmsk exon 146346795 146346899 1642 - . gene_id "ERVLE_1q21.1e"; transcript_id "ERVLE_1q21.1e"; locus "ERVLE_1q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0205"; repClass "LTR"; repEnd "3819"; repFamily "ERVL"; repLeft "3698"; repStart "-1848"; ### LTR23_1q21.1 ### chr1 rmsk gene 146382796 146386237 . + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0008"; model_cov "714"; model_pct "13.9"; chr1 rmsk exon 146382796 146382857 301 + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0008"; repClass "LTR"; repEnd "-1287"; repFamily "ERV1"; repLeft "-6410"; repStart "-1348"; chr1 rmsk exon 146382894 146382910 301 + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0008"; repClass "LTR"; repEnd "-1269"; repFamily "ERV1"; repLeft "-6392"; repStart "-1286"; chr1 rmsk exon 146383210 146383325 301 + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0008"; repClass "LTR"; repEnd "-1159"; repFamily "ERV1"; repLeft "-6282"; repStart "-1268"; chr1 rmsk exon 146383922 146384062 467 + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0008"; repClass "LTR"; repEnd "-843"; repFamily "ERV1"; repLeft "-5966"; repStart "-984"; chr1 rmsk exon 146385799 146386237 733 + . gene_id "LTR23_1q21.1"; transcript_id "LTR23_1q21.1"; locus "LTR23_1q21.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0008"; repClass "LTR"; repEnd "5030"; repFamily "ERV1"; repLeft "-93"; repStart "4644"; ### PRIMA4_1q21.1d ### chr1 rmsk gene 146403336 146405352 . + . gene_id "PRIMA4_1q21.1d"; transcript_id "PRIMA4_1q21.1d"; locus "PRIMA4_1q21.1d"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0010"; model_cov "1547"; model_pct "18.7"; chr1 rmsk exon 146403336 146403664 3195 + . gene_id "PRIMA4_1q21.1d"; transcript_id "PRIMA4_1q21.1d"; locus "PRIMA4_1q21.1d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0010"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "-3112"; repStart "4838"; chr1 rmsk exon 146403974 146404986 3195 + . gene_id "PRIMA4_1q21.1d"; transcript_id "PRIMA4_1q21.1d"; locus "PRIMA4_1q21.1d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0010"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "-2104"; repStart "5159"; chr1 rmsk exon 146405138 146405352 3195 + . gene_id "PRIMA4_1q21.1d"; transcript_id "PRIMA4_1q21.1d"; locus "PRIMA4_1q21.1d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0010"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "-1883"; repStart "6167"; ### ERVLE_1q21.1f ### chr1 rmsk gene 146427075 146427872 . + . gene_id "ERVLE_1q21.1f"; transcript_id "ERVLE_1q21.1f"; locus "ERVLE_1q21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0206"; model_cov "709"; model_pct "12.5"; chr1 rmsk exon 146427075 146427217 715 + . gene_id "ERVLE_1q21.1f"; transcript_id "ERVLE_1q21.1f"; locus "ERVLE_1q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0206"; repClass "LTR"; repEnd "4651"; repFamily "ERVL"; repLeft "-1016"; repStart "4514"; chr1 rmsk exon 146427342 146427872 715 + . gene_id "ERVLE_1q21.1f"; transcript_id "ERVLE_1q21.1f"; locus "ERVLE_1q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0206"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-443"; repStart "4652"; ### PRIMA4_1q21.1e ### chr1 rmsk gene 146475429 146477141 . - . gene_id "PRIMA4_1q21.1e"; transcript_id "PRIMA4_1q21.1e"; locus "PRIMA4_1q21.1e"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0011"; model_cov "1548"; model_pct "18.7"; chr1 rmsk exon 146475429 146475643 3046 - . gene_id "PRIMA4_1q21.1e"; transcript_id "PRIMA4_1q21.1e"; locus "PRIMA4_1q21.1e"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0011"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6162"; repStart "-1883"; chr1 rmsk exon 146475796 146477141 3046 - . gene_id "PRIMA4_1q21.1e"; transcript_id "PRIMA4_1q21.1e"; locus "PRIMA4_1q21.1e"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0011"; repClass "LTR"; repEnd "6161"; repFamily "ERV1"; repLeft "4838"; repStart "-2109"; ### HERVL_1q21.1b ### chr1 rmsk gene 147147589 147148685 . + . gene_id "HERVL_1q21.1b"; transcript_id "HERVL_1q21.1b"; locus "HERVL_1q21.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0076"; model_cov "596"; model_pct "10.5"; chr1 rmsk exon 147147589 147147960 2924 + . gene_id "HERVL_1q21.1b"; transcript_id "HERVL_1q21.1b"; locus "HERVL_1q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0076"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr1 rmsk exon 147148041 147148090 2924 + . gene_id "HERVL_1q21.1b"; transcript_id "HERVL_1q21.1b"; locus "HERVL_1q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0076"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "386"; chr1 rmsk exon 147148091 147148685 4352 + . gene_id "HERVL_1q21.1b"; transcript_id "HERVL_1q21.1b"; locus "HERVL_1q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0076"; repClass "LTR"; repEnd "597"; repFamily "ERVL"; repLeft "-5057"; repStart "1"; ### HERVL18_1q21.2 ### chr1 rmsk gene 147717143 147719676 . + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0008"; model_cov "1163"; model_pct "19.2"; chr1 rmsk exon 147717143 147717703 2957 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 147717717 147717946 1253 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "-5750"; repStart "68"; chr1 rmsk exon 147717941 147718116 950 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "492"; chr1 rmsk exon 147718112 147718153 287 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "958"; repFamily "ERVL"; repLeft "-5089"; repStart "917"; chr1 rmsk exon 147718144 147718269 508 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "1509"; repFamily "ERVL"; repLeft "-4538"; repStart "1383"; chr1 rmsk exon 147718252 147718307 313 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2963"; repStart "3030"; chr1 rmsk exon 147718308 147718840 3721 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2952"; chr1 rmsk exon 147719122 147719676 2949 + . gene_id "HERVL18_1q21.2"; transcript_id "HERVL18_1q21.2"; locus "HERVL18_1q21.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0008"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_1q21.2c ### chr1 rmsk gene 147743660 147745882 . + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; category "insert*"; intModel "ERVL-E-int"; locid "ERVL-E-int_0209"; model_cov "937"; model_pct "16.5"; chr1 rmsk exon 147743660 147744456 2756 + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0209"; prev_strand "-"; repClass "LTR"; repEnd "4396"; repFamily "ERVL"; repLeft "3575"; repStart "-1271"; chr1 rmsk exon 147744480 147744835 1508 + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0209"; repClass "LTR"; repEnd "1736"; repFamily "ERVL"; repLeft "-3931"; repStart "1355"; chr1 rmsk exon 147745129 147745366 1508 + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0209"; repClass "LTR"; repEnd "1973"; repFamily "ERVL"; repLeft "-3694"; repStart "1737"; chr1 rmsk exon 147745469 147745773 1000 + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0209"; repClass "LTR"; repEnd "2311"; repFamily "ERVL"; repLeft "-3356"; repStart "1991"; chr1 rmsk exon 147745777 147745882 452 + . gene_id "ERVLE_1q21.2c"; transcript_id "ERVLE_1q21.2c"; locus "ERVLE_1q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0209"; prev_strand "-"; repClass "LTR"; repEnd "1237"; repFamily "ERVL"; repLeft "1131"; repStart "-4430"; ### PRIMA4_1q21.2a ### chr1 rmsk gene 148045199 148046546 . - . gene_id "PRIMA4_1q21.2a"; transcript_id "PRIMA4_1q21.2a"; locus "PRIMA4_1q21.2a"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0012"; model_cov "1197"; model_pct "14.5"; chr1 rmsk exon 148045199 148045413 2066 - . gene_id "PRIMA4_1q21.2a"; transcript_id "PRIMA4_1q21.2a"; locus "PRIMA4_1q21.2a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0012"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6162"; repStart "-1883"; chr1 rmsk exon 148045571 148046546 2066 - . gene_id "PRIMA4_1q21.2a"; transcript_id "PRIMA4_1q21.2a"; locus "PRIMA4_1q21.2a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0012"; repClass "LTR"; repEnd "6161"; repFamily "ERV1"; repLeft "5189"; repStart "-2109"; ### PRIMA4_1q21.2b ### chr1 rmsk gene 148256217 148257928 . + . gene_id "PRIMA4_1q21.2b"; transcript_id "PRIMA4_1q21.2b"; locus "PRIMA4_1q21.2b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0013"; model_cov "1548"; model_pct "18.7"; chr1 rmsk exon 148256217 148257561 3012 + . gene_id "PRIMA4_1q21.2b"; transcript_id "PRIMA4_1q21.2b"; locus "PRIMA4_1q21.2b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0013"; repClass "LTR"; repEnd "6161"; repFamily "ERV1"; repLeft "-2109"; repStart "4838"; chr1 rmsk exon 148257714 148257928 3012 + . gene_id "PRIMA4_1q21.2b"; transcript_id "PRIMA4_1q21.2b"; locus "PRIMA4_1q21.2b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0013"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "-1883"; repStart "6162"; ### HARLEQUIN_1q21.2 ### chr1 rmsk gene 148323682 148325418 . - . gene_id "HARLEQUIN_1q21.2"; transcript_id "HARLEQUIN_1q21.2"; locus "HARLEQUIN_1q21.2"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0016"; model_cov "1199"; model_pct "17.4"; chr1 rmsk exon 148323682 148324208 3538 - . gene_id "HARLEQUIN_1q21.2"; transcript_id "HARLEQUIN_1q21.2"; locus "HARLEQUIN_1q21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0016"; repClass "LTR"; repEnd "2131"; repFamily "ERV1"; repLeft "1572"; repStart "-4765"; chr1 rmsk exon 148324194 148324833 4969 - . gene_id "HARLEQUIN_1q21.2"; transcript_id "HARLEQUIN_1q21.2"; locus "HARLEQUIN_1q21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0016"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "263"; repStart "-5993"; chr1 rmsk exon 148325313 148325418 911 - . gene_id "HARLEQUIN_1q21.2"; transcript_id "HARLEQUIN_1q21.2"; locus "HARLEQUIN_1q21.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0016"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "377"; repStart "-1"; ### PRIMA4_1q21.2c ### chr1 rmsk gene 148367053 148369350 . - . gene_id "PRIMA4_1q21.2c"; transcript_id "PRIMA4_1q21.2c"; locus "PRIMA4_1q21.2c"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0014"; model_cov "1546"; model_pct "18.7"; chr1 rmsk exon 148367053 148367259 3135 - . gene_id "PRIMA4_1q21.2c"; transcript_id "PRIMA4_1q21.2c"; locus "PRIMA4_1q21.2c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0014"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6178"; repStart "-1883"; chr1 rmsk exon 148367413 148367954 3135 - . gene_id "PRIMA4_1q21.2c"; transcript_id "PRIMA4_1q21.2c"; locus "PRIMA4_1q21.2c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0014"; repClass "LTR"; repEnd "6177"; repFamily "ERV1"; repLeft "5630"; repStart "-2093"; chr1 rmsk exon 148368255 148368727 3135 - . gene_id "PRIMA4_1q21.2c"; transcript_id "PRIMA4_1q21.2c"; locus "PRIMA4_1q21.2c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0014"; repClass "LTR"; repEnd "5629"; repFamily "ERV1"; repLeft "5161"; repStart "-2641"; chr1 rmsk exon 148369021 148369350 3135 - . gene_id "PRIMA4_1q21.2c"; transcript_id "PRIMA4_1q21.2c"; locus "PRIMA4_1q21.2c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0014"; repClass "LTR"; repEnd "5160"; repFamily "ERV1"; repLeft "4838"; repStart "-3110"; ### MER4_1q21.2 ### chr1 rmsk gene 148409788 148410690 . - . gene_id "MER4_1q21.2"; transcript_id "MER4_1q21.2"; locus "MER4_1q21.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0041"; model_cov "805"; model_pct "12.2"; chr1 rmsk exon 148409788 148410043 905 - . gene_id "MER4_1q21.2"; transcript_id "MER4_1q21.2"; locus "MER4_1q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0041"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "505"; repStart "-5761"; chr1 rmsk exon 148410178 148410633 2724 - . gene_id "MER4_1q21.2"; transcript_id "MER4_1q21.2"; locus "MER4_1q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0041"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "-6124"; chr1 rmsk exon 148410636 148410690 350 - . gene_id "MER4_1q21.2"; transcript_id "MER4_1q21.2"; locus "MER4_1q21.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0041"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "412"; repStart "0"; ### ERVLE_1q21.2a ### chr1 rmsk gene 148482118 148485772 . - . gene_id "ERVLE_1q21.2a"; transcript_id "ERVLE_1q21.2a"; locus "ERVLE_1q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0212"; model_cov "1353"; model_pct "23.9"; chr1 rmsk exon 148482118 148482211 353 - . gene_id "ERVLE_1q21.2a"; transcript_id "ERVLE_1q21.2a"; locus "ERVLE_1q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0212"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "5121"; repStart "-472"; chr1 rmsk exon 148484032 148485003 1659 - . gene_id "ERVLE_1q21.2a"; transcript_id "ERVLE_1q21.2a"; locus "ERVLE_1q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0212"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "3819"; repStart "-856"; chr1 rmsk exon 148485316 148485419 1659 - . gene_id "ERVLE_1q21.2a"; transcript_id "ERVLE_1q21.2a"; locus "ERVLE_1q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0212"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "3698"; repStart "-1849"; chr1 rmsk exon 148485615 148485772 305 - . gene_id "ERVLE_1q21.2a"; transcript_id "ERVLE_1q21.2a"; locus "ERVLE_1q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0212"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "3183"; repStart "-2317"; ### HERVL_1q21.2a ### chr1 rmsk gene 148611864 148613835 . + . gene_id "HERVL_1q21.2a"; transcript_id "HERVL_1q21.2a"; locus "HERVL_1q21.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0077"; model_cov "1469"; model_pct "26.0"; chr1 rmsk exon 148611864 148613326 10577 + . gene_id "HERVL_1q21.2a"; transcript_id "HERVL_1q21.2a"; locus "HERVL_1q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0077"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4185"; chr1 rmsk exon 148613327 148613723 2880 + . gene_id "HERVL_1q21.2a"; transcript_id "HERVL_1q21.2a"; locus "HERVL_1q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0077"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr1 rmsk exon 148613785 148613835 277 + . gene_id "HERVL_1q21.2a"; transcript_id "HERVL_1q21.2a"; locus "HERVL_1q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0077"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### PRIMA4_1q21.2d ### chr1 rmsk gene 149167499 149169496 . - . gene_id "PRIMA4_1q21.2d"; transcript_id "PRIMA4_1q21.2d"; locus "PRIMA4_1q21.2d"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0015"; model_cov "1547"; model_pct "18.7"; chr1 rmsk exon 149167499 149167713 2688 - . gene_id "PRIMA4_1q21.2d"; transcript_id "PRIMA4_1q21.2d"; locus "PRIMA4_1q21.2d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0015"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6167"; repStart "-1883"; chr1 rmsk exon 149167864 149168872 2688 - . gene_id "PRIMA4_1q21.2d"; transcript_id "PRIMA4_1q21.2d"; locus "PRIMA4_1q21.2d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0015"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "5160"; repStart "-2104"; chr1 rmsk exon 149169168 149169496 2688 - . gene_id "PRIMA4_1q21.2d"; transcript_id "PRIMA4_1q21.2d"; locus "PRIMA4_1q21.2d"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0015"; repClass "LTR"; repEnd "5159"; repFamily "ERV1"; repLeft "4838"; repStart "-3111"; ### HERVL_1q21.2b ### chr1 rmsk gene 149457432 149459404 . - . gene_id "HERVL_1q21.2b"; transcript_id "HERVL_1q21.2b"; locus "HERVL_1q21.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0078"; model_cov "1469"; model_pct "26.0"; chr1 rmsk exon 149457432 149457488 300 - . gene_id "HERVL_1q21.2b"; transcript_id "HERVL_1q21.2b"; locus "HERVL_1q21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0078"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chr1 rmsk exon 149457521 149457941 3058 - . gene_id "HERVL_1q21.2b"; transcript_id "HERVL_1q21.2b"; locus "HERVL_1q21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0078"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-110"; repStart "-54"; chr1 rmsk exon 149457942 149459404 11404 - . gene_id "HERVL_1q21.2b"; transcript_id "HERVL_1q21.2b"; locus "HERVL_1q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0078"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4185"; repStart "0"; ### ERVLE_1q21.2b ### chr1 rmsk gene 149582081 149585032 . + . gene_id "ERVLE_1q21.2b"; transcript_id "ERVLE_1q21.2b"; locus "ERVLE_1q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0215"; model_cov "1078"; model_pct "19.0"; chr1 rmsk exon 149582081 149583052 1285 + . gene_id "ERVLE_1q21.2b"; transcript_id "ERVLE_1q21.2b"; locus "ERVLE_1q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0215"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "-856"; repStart "3802"; chr1 rmsk exon 149584944 149585032 330 + . gene_id "ERVLE_1q21.2b"; transcript_id "ERVLE_1q21.2b"; locus "ERVLE_1q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0215"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-477"; repStart "5121"; ### HERVL40_1q21.2 ### chr1 rmsk gene 149750544 149751161 . - . gene_id "HERVL40_1q21.2"; transcript_id "HERVL40_1q21.2"; locus "HERVL40_1q21.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0015"; model_cov "592"; model_pct "10.7"; chr1 rmsk exon 149750544 149750632 533 - . gene_id "HERVL40_1q21.2"; transcript_id "HERVL40_1q21.2"; locus "HERVL40_1q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0015"; repClass "LTR"; repEnd "3599"; repFamily "ERVL"; repLeft "3509"; repStart "-1931"; chr1 rmsk exon 149750658 149750945 1212 - . gene_id "HERVL40_1q21.2"; transcript_id "HERVL40_1q21.2"; locus "HERVL40_1q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0015"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "2050"; repStart "-3202"; chr1 rmsk exon 149750946 149751161 398 - . gene_id "HERVL40_1q21.2"; transcript_id "HERVL40_1q21.2"; locus "HERVL40_1q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0015"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1393"; repStart "-3913"; ### ERV316A3_1q21.2 ### chr1 rmsk gene 150165565 150170972 . + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0106"; model_cov "3178"; model_pct "60.8"; chr1 rmsk exon 150165565 150165662 255 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-4746"; repStart "382"; chr1 rmsk exon 150165750 150166397 2675 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "901"; repFamily "ERVL"; repLeft "-4325"; repStart "233"; chr1 rmsk exon 150166710 150167264 2675 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "1467"; repFamily "ERVL"; repLeft "-3759"; repStart "902"; chr1 rmsk exon 150167850 150167925 2396 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "1531"; repFamily "ERVL"; repLeft "-3695"; repStart "1468"; chr1 rmsk exon 150168828 150170115 4024 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "2909"; repFamily "ERVL"; repLeft "-2317"; repStart "1599"; chr1 rmsk exon 150170108 150170575 1622 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4752"; chr1 rmsk exon 150170576 150170972 1566 + . gene_id "ERV316A3_1q21.2"; transcript_id "ERV316A3_1q21.2"; locus "ERV316A3_1q21.2"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0106"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HML2_1q21.3 ### chr1 rmsk gene 150632886 150634662 . - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0009"; model_cov "1783"; model_pct "23.7"; chr1 rmsk exon 150632886 150634662 15187 - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0009"; repClass "LTR"; repEnd "5563"; repFamily "ERVK"; repLeft "3780"; repStart "-1973"; ### HML3_1q21.3a ### chr1 rmsk gene 150654577 150659716 . + . gene_id "HML3_1q21.3a"; transcript_id "HML3_1q21.3a"; locus "HML3_1q21.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0013"; model_cov "4659"; model_pct "77.4"; chr1 rmsk exon 150654577 150654652 656 + . gene_id "HML3_1q21.3a"; transcript_id "HML3_1q21.3a"; locus "HML3_1q21.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0013"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "505"; chr1 rmsk exon 150654651 150659225 38470 + . gene_id "HML3_1q21.3a"; transcript_id "HML3_1q21.3a"; locus "HML3_1q21.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0013"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "-1"; repStart "1436"; chr1 rmsk exon 150659227 150659716 3893 + . gene_id "HML3_1q21.3a"; transcript_id "HML3_1q21.3a"; locus "HML3_1q21.3a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0013"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER41_1q21.3a ### chr1 rmsk gene 151075748 151077198 . - . gene_id "MER41_1q21.3a"; transcript_id "MER41_1q21.3a"; locus "MER41_1q21.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0020"; model_cov "756"; model_pct "12.7"; chr1 rmsk exon 151075748 151075856 2471 - . gene_id "MER41_1q21.3a"; transcript_id "MER41_1q21.3a"; locus "MER41_1q21.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0020"; repClass "LTR"; repEnd "90"; repFamily "ERV1"; repLeft "4"; repStart "-464"; chr1 rmsk exon 151075857 151076426 4422 - . gene_id "MER41_1q21.3a"; transcript_id "MER41_1q21.3a"; locus "MER41_1q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0020"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5369"; repStart "-2"; chr1 rmsk exon 151076730 151076794 1017 - . gene_id "MER41_1q21.3a"; transcript_id "MER41_1q21.3a"; locus "MER41_1q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0020"; repClass "LTR"; repEnd "5319"; repFamily "ERV1"; repLeft "5251"; repStart "-627"; chr1 rmsk exon 151077070 151077198 1017 - . gene_id "MER41_1q21.3a"; transcript_id "MER41_1q21.3a"; locus "MER41_1q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0020"; repClass "LTR"; repEnd "5250"; repFamily "ERV1"; repLeft "5137"; repStart "-696"; ### ERVLE_1q21.3a ### chr1 rmsk gene 151381668 151384894 . + . gene_id "ERVLE_1q21.3a"; transcript_id "ERVLE_1q21.3a"; locus "ERVLE_1q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0217"; model_cov "1857"; model_pct "32.8"; chr1 rmsk exon 151381668 151382035 507 + . gene_id "ERVLE_1q21.3a"; transcript_id "ERVLE_1q21.3a"; locus "ERVLE_1q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0217"; repClass "LTR"; repEnd "3477"; repFamily "ERVL"; repLeft "-2190"; repStart "3067"; chr1 rmsk exon 151383384 151384031 831 + . gene_id "ERVLE_1q21.3a"; transcript_id "ERVLE_1q21.3a"; locus "ERVLE_1q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0217"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-1198"; repStart "3739"; chr1 rmsk exon 151384233 151384894 1371 + . gene_id "ERVLE_1q21.3a"; transcript_id "ERVLE_1q21.3a"; locus "ERVLE_1q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0217"; repClass "LTR"; repEnd "5184"; repFamily "ERVL"; repLeft "-483"; repStart "4467"; ### ERV316A3_1q21.3a ### chr1 rmsk gene 151498455 151503350 . - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0107"; model_cov "3110"; model_pct "59.5"; chr1 rmsk exon 151498455 151498827 1710 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "5"; repStart "-8"; chr1 rmsk exon 151498881 151499168 2857 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "4845"; repStart "-75"; chr1 rmsk exon 151499466 151499791 2857 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "4517"; repStart "-382"; chr1 rmsk exon 151499779 151500000 1279 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "2912"; repFamily "ERVL"; repLeft "2692"; repStart "-2314"; chr1 rmsk exon 151500008 151500195 682 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "3064"; repFamily "ERVL"; repLeft "2731"; repStart "-2162"; chr1 rmsk exon 151500199 151500915 2859 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "1938"; repFamily "ERVL"; repLeft "1208"; repStart "-3288"; chr1 rmsk exon 151501515 151501709 2859 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "1207"; repFamily "ERVL"; repLeft "992"; repStart "-4019"; chr1 rmsk exon 151502012 151502881 2859 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "991"; repFamily "ERVL"; repLeft "12"; repStart "-4235"; chr1 rmsk exon 151502892 151503350 1154 - . gene_id "ERV316A3_1q21.3a"; transcript_id "ERV316A3_1q21.3a"; locus "ERV316A3_1q21.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0107"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1q21.3b ### chr1 rmsk gene 151753504 151757274 . + . gene_id "ERV316A3_1q21.3b"; transcript_id "ERV316A3_1q21.3b"; locus "ERV316A3_1q21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0108"; model_cov "3149"; model_pct "60.3"; chr1 rmsk exon 151753504 151755400 5229 + . gene_id "ERV316A3_1q21.3b"; transcript_id "ERV316A3_1q21.3b"; locus "ERV316A3_1q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0108"; repClass "LTR"; repEnd "3523"; repFamily "ERVL"; repLeft "-1703"; repStart "1639"; chr1 rmsk exon 151755434 151756638 4241 + . gene_id "ERV316A3_1q21.3b"; transcript_id "ERV316A3_1q21.3b"; locus "ERV316A3_1q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0108"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "-291"; repStart "3670"; chr1 rmsk exon 151756897 151757274 1186 + . gene_id "ERV316A3_1q21.3b"; transcript_id "ERV316A3_1q21.3b"; locus "ERV316A3_1q21.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0108"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "12"; ### MER61_1q21.3 ### chr1 rmsk gene 151907955 151909112 . + . gene_id "MER61_1q21.3"; transcript_id "MER61_1q21.3"; locus "MER61_1q21.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0021"; model_cov "1299"; model_pct "24.9"; chr1 rmsk exon 151907955 151908832 2884 + . gene_id "MER61_1q21.3"; transcript_id "MER61_1q21.3"; locus "MER61_1q21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0021"; repClass "LTR"; repEnd "1272"; repFamily "ERV1"; repLeft "-3945"; repStart "247"; chr1 rmsk exon 151908839 151909112 1925 + . gene_id "MER61_1q21.3"; transcript_id "MER61_1q21.3"; locus "MER61_1q21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0021"; repClass "LTR"; repEnd "1667"; repFamily "ERV1"; repLeft "-3550"; repStart "1393"; ### MER4B_1q21.3a ### chr1 rmsk gene 151926885 151928589 . + . gene_id "MER4B_1q21.3a"; transcript_id "MER4B_1q21.3a"; locus "MER4B_1q21.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0028"; model_cov "1528"; model_pct "22.6"; chr1 rmsk exon 151926885 151927328 5453 + . gene_id "MER4B_1q21.3a"; transcript_id "MER4B_1q21.3a"; locus "MER4B_1q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0028"; repClass "LTR"; repEnd "1952"; repFamily "ERV1"; repLeft "-4806"; repStart "1554"; chr1 rmsk exon 151927632 151928589 8215 + . gene_id "MER4B_1q21.3a"; transcript_id "MER4B_1q21.3a"; locus "MER4B_1q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0028"; repClass "LTR"; repEnd "4404"; repFamily "ERV1"; repLeft "-2354"; repStart "3274"; ### MER4B_1q21.3b ### chr1 rmsk gene 151928886 151930233 . + . gene_id "MER4B_1q21.3b"; transcript_id "MER4B_1q21.3b"; locus "MER4B_1q21.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0029"; model_cov "877"; model_pct "13.0"; chr1 rmsk exon 151928886 151929437 8215 + . gene_id "MER4B_1q21.3b"; transcript_id "MER4B_1q21.3b"; locus "MER4B_1q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0029"; repClass "LTR"; repEnd "2529"; repFamily "ERV1"; repLeft "-4229"; repStart "1980"; chr1 rmsk exon 151929737 151930079 8215 + . gene_id "MER4B_1q21.3b"; transcript_id "MER4B_1q21.3b"; locus "MER4B_1q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0029"; repClass "LTR"; repEnd "2858"; repFamily "ERV1"; repLeft "-3900"; repStart "2530"; chr1 rmsk exon 151930080 151930233 1087 + . gene_id "MER4B_1q21.3b"; transcript_id "MER4B_1q21.3b"; locus "MER4B_1q21.3b"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0029"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "626"; ### ERVLE_1q21.3b ### chr1 rmsk gene 151965493 151970642 . - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0218"; model_cov "2025"; model_pct "35.7"; chr1 rmsk exon 151965493 151965808 791 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "5430"; repFamily "ERVL"; repLeft "5089"; repStart "-237"; chr1 rmsk exon 151966143 151966418 780 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "5068"; repFamily "ERVL"; repLeft "4771"; repStart "-599"; chr1 rmsk exon 151966431 151967195 1906 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3279"; repStart "-1648"; chr1 rmsk exon 151967691 151968013 1125 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "2911"; repStart "-2434"; chr1 rmsk exon 151970077 151970185 345 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "2059"; repFamily "ERVL"; repLeft "1950"; repStart "-3608"; chr1 rmsk exon 151970436 151970642 498 - . gene_id "ERVLE_1q21.3b"; transcript_id "ERVLE_1q21.3b"; locus "ERVLE_1q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0218"; repClass "LTR"; repEnd "1570"; repFamily "ERVL"; repLeft "1354"; repStart "-4097"; ### HERVL_1q21.3 ### chr1 rmsk gene 152252586 152253636 . - . gene_id "HERVL_1q21.3"; transcript_id "HERVL_1q21.3"; locus "HERVL_1q21.3"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0079"; model_cov "1055"; model_pct "18.7"; chr1 rmsk exon 152252586 152253636 7876 - . gene_id "HERVL_1q21.3"; transcript_id "HERVL_1q21.3"; locus "HERVL_1q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0079"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "3554"; repStart "-1045"; ### HUERSP2_1q21.3 ### chr1 rmsk gene 152377816 152381649 . - . gene_id "HUERSP2_1q21.3"; transcript_id "HUERSP2_1q21.3"; locus "HUERSP2_1q21.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0009"; model_cov "2884"; model_pct "93.4"; chr1 rmsk exon 152377816 152378640 4976 - . gene_id "HUERSP2_1q21.3"; transcript_id "HUERSP2_1q21.3"; locus "HUERSP2_1q21.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0009"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 152378641 152381430 14388 - . gene_id "HUERSP2_1q21.3"; transcript_id "HUERSP2_1q21.3"; locus "HUERSP2_1q21.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0009"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "204"; repStart "0"; chr1 rmsk exon 152381566 152381649 573 - . gene_id "HUERSP2_1q21.3"; transcript_id "HUERSP2_1q21.3"; locus "HUERSP2_1q21.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0009"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "755"; repStart "0"; ### HML3_1q21.3b ### chr1 rmsk gene 152421227 152424687 . - . gene_id "HML3_1q21.3b"; transcript_id "HML3_1q21.3b"; locus "HML3_1q21.3b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0014"; model_cov "2320"; model_pct "38.5"; chr1 rmsk exon 152421227 152421735 4214 - . gene_id "HML3_1q21.3b"; transcript_id "HML3_1q21.3b"; locus "HML3_1q21.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0014"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "3"; repStart "0"; chr1 rmsk exon 152421738 152422851 8945 - . gene_id "HML3_1q21.3b"; transcript_id "HML3_1q21.3b"; locus "HML3_1q21.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0014"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4906"; repStart "0"; chr1 rmsk exon 152422957 152424168 8357 - . gene_id "HML3_1q21.3b"; transcript_id "HML3_1q21.3b"; locus "HML3_1q21.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0014"; repClass "LTR"; repEnd "1206"; repFamily "ERVK"; repLeft "1"; repStart "-4815"; chr1 rmsk exon 152424169 152424687 4261 - . gene_id "HML3_1q21.3b"; transcript_id "HML3_1q21.3b"; locus "HML3_1q21.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0014"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVP71A_1q21.3 ### chr1 rmsk gene 152481514 152486442 . - . gene_id "HERVP71A_1q21.3"; transcript_id "HERVP71A_1q21.3"; locus "HERVP71A_1q21.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0007"; model_cov "4034"; model_pct "53.1"; chr1 rmsk exon 152481514 152484292 14155 - . gene_id "HERVP71A_1q21.3"; transcript_id "HERVP71A_1q21.3"; locus "HERVP71A_1q21.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0007"; repClass "LTR"; repEnd "6277"; repFamily "ERV1"; repLeft "3541"; repStart "-1313"; chr1 rmsk exon 152484578 152485861 7840 - . gene_id "HERVP71A_1q21.3"; transcript_id "HERVP71A_1q21.3"; locus "HERVP71A_1q21.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0007"; repClass "LTR"; repEnd "1300"; repFamily "ERV1"; repLeft "2"; repStart "-6290"; chr1 rmsk exon 152485862 152486442 4414 - . gene_id "HERVP71A_1q21.3"; transcript_id "HERVP71A_1q21.3"; locus "HERVP71A_1q21.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0007"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERVLB4_1q21.3 ### chr1 rmsk gene 152815774 152818436 . + . gene_id "ERVLB4_1q21.3"; transcript_id "ERVLB4_1q21.3"; locus "ERVLB4_1q21.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0073"; model_cov "1567"; model_pct "27.4"; chr1 rmsk exon 152815774 152815915 1603 + . gene_id "ERVLB4_1q21.3"; transcript_id "ERVLB4_1q21.3"; locus "ERVLB4_1q21.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0073"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-48"; repStart "237"; chr1 rmsk exon 152815957 152816516 5252 + . gene_id "ERVLB4_1q21.3"; transcript_id "ERVLB4_1q21.3"; locus "ERVLB4_1q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0073"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "-5154"; repStart "22"; chr1 rmsk exon 152816834 152817566 5252 + . gene_id "ERVLB4_1q21.3"; transcript_id "ERVLB4_1q21.3"; locus "ERVLB4_1q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0073"; repClass "LTR"; repEnd "1376"; repFamily "ERVL"; repLeft "-4338"; repStart "561"; chr1 rmsk exon 152818238 152818436 981 + . gene_id "ERVLB4_1q21.3"; transcript_id "ERVLB4_1q21.3"; locus "ERVLB4_1q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0073"; repClass "LTR"; repEnd "2624"; repFamily "ERVL"; repLeft "-3090"; repStart "2410"; ### MER4_1q21.3 ### chr1 rmsk gene 153020541 153021693 . + . gene_id "MER4_1q21.3"; transcript_id "MER4_1q21.3"; locus "MER4_1q21.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0043"; model_cov "740"; model_pct "11.2"; chr1 rmsk exon 153020541 153020708 1032 + . gene_id "MER4_1q21.3"; transcript_id "MER4_1q21.3"; locus "MER4_1q21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0043"; repClass "LTR"; repEnd "4557"; repFamily "ERV1"; repLeft "-2041"; repStart "4386"; chr1 rmsk exon 153020710 153021273 3427 + . gene_id "MER4_1q21.3"; transcript_id "MER4_1q21.3"; locus "MER4_1q21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0043"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "6029"; chr1 rmsk exon 153021281 153021693 2929 + . gene_id "MER4_1q21.3"; transcript_id "MER4_1q21.3"; locus "MER4_1q21.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0043"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "-19"; repStart "7"; ### MER101_1q21.3 ### chr1 rmsk gene 153274519 153276933 . + . gene_id "MER101_1q21.3"; transcript_id "MER101_1q21.3"; locus "MER101_1q21.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0026"; model_cov "2755"; model_pct "41.5"; chr1 rmsk exon 153274519 153275289 3217 + . gene_id "MER101_1q21.3"; transcript_id "MER101_1q21.3"; locus "MER101_1q21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0026"; repClass "LTR"; repEnd "4376"; repFamily "ERV1"; repLeft "-2263"; repStart "3081"; chr1 rmsk exon 153275567 153276086 3217 + . gene_id "MER101_1q21.3"; transcript_id "MER101_1q21.3"; locus "MER101_1q21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0026"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3604"; chr1 rmsk exon 153276089 153276553 1939 + . gene_id "MER101_1q21.3"; transcript_id "MER101_1q21.3"; locus "MER101_1q21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0026"; repClass "LTR"; repEnd "6631"; repFamily "ERV1"; repLeft "-8"; repStart "6169"; chr1 rmsk exon 153276560 153276933 2292 + . gene_id "MER101_1q21.3"; transcript_id "MER101_1q21.3"; locus "MER101_1q21.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0026"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "38"; ### ERV316A3_1q21.3c ### chr1 rmsk gene 153434213 153435178 . + . gene_id "ERV316A3_1q21.3c"; transcript_id "ERV316A3_1q21.3c"; locus "ERV316A3_1q21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0109"; model_cov "526"; model_pct "10.1"; chr1 rmsk exon 153434213 153434735 1068 + . gene_id "ERV316A3_1q21.3c"; transcript_id "ERV316A3_1q21.3c"; locus "ERV316A3_1q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0109"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4700"; chr1 rmsk exon 153434736 153435178 1191 + . gene_id "ERV316A3_1q21.3c"; transcript_id "ERV316A3_1q21.3c"; locus "ERV316A3_1q21.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0109"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-12"; repStart "1"; ### ERV316A3_1q21.3d ### chr1 rmsk gene 153470032 153474206 . - . gene_id "ERV316A3_1q21.3d"; transcript_id "ERV316A3_1q21.3d"; locus "ERV316A3_1q21.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0110"; model_cov "2660"; model_pct "50.9"; chr1 rmsk exon 153470032 153470498 1872 - . gene_id "ERV316A3_1q21.3d"; transcript_id "ERV316A3_1q21.3d"; locus "ERV316A3_1q21.3d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0110"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "7"; repStart "0"; chr1 rmsk exon 153470505 153471690 4373 - . gene_id "ERV316A3_1q21.3d"; transcript_id "ERV316A3_1q21.3d"; locus "ERV316A3_1q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0110"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4004"; repStart "0"; chr1 rmsk exon 153472791 153474206 4806 - . gene_id "ERV316A3_1q21.3d"; transcript_id "ERV316A3_1q21.3d"; locus "ERV316A3_1q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0110"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "2564"; repStart "-1224"; ### HUERSP3B_1q21.3 ### chr1 rmsk gene 153603714 153606012 . + . gene_id "HUERSP3B_1q21.3"; transcript_id "HUERSP3B_1q21.3"; locus "HUERSP3B_1q21.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0008"; model_cov "1450"; model_pct "19.5"; chr1 rmsk exon 153603714 153603915 1389 + . gene_id "HUERSP3B_1q21.3"; transcript_id "HUERSP3B_1q21.3"; locus "HUERSP3B_1q21.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0008"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "445"; chr1 rmsk exon 153604083 153605478 8647 + . gene_id "HUERSP3B_1q21.3"; transcript_id "HUERSP3B_1q21.3"; locus "HUERSP3B_1q21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0008"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "5961"; chr1 rmsk exon 153605480 153605539 456 + . gene_id "HUERSP3B_1q21.3"; transcript_id "HUERSP3B_1q21.3"; locus "HUERSP3B_1q21.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0008"; repClass "LTR"; repEnd "60"; repFamily "ERV1"; repLeft "-584"; repStart "1"; chr1 rmsk exon 153605778 153606012 2746 + . gene_id "HUERSP3B_1q21.3"; transcript_id "HUERSP3B_1q21.3"; locus "HUERSP3B_1q21.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0008"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "-326"; repStart "60"; ### HML3_1q21.3c ### chr1 rmsk gene 154047362 154053911 . + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0015"; model_cov "5291"; model_pct "87.9"; chr1 rmsk exon 154047362 154047852 3946 + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0015"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 154047853 154048469 4684 + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0015"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "-5398"; repStart "1"; chr1 rmsk exon 154048460 154051217 37794 + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0015"; repClass "LTR"; repEnd "4106"; repFamily "ERVK"; repLeft "-1915"; repStart "1349"; chr1 rmsk exon 154051514 154053417 37794 + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0015"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "4107"; chr1 rmsk exon 154053421 154053911 3920 + . gene_id "HML3_1q21.3c"; transcript_id "HML3_1q21.3c"; locus "HML3_1q21.3c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0015"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_1q21.3e ### chr1 rmsk gene 154302860 154306031 . - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0111"; model_cov "1449"; model_pct "27.7"; chr1 rmsk exon 154302860 154303230 611 - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0111"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "4815"; repStart "-45"; chr1 rmsk exon 154304270 154304368 783 - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0111"; repClass "LTR"; repEnd "4341"; repFamily "ERVL"; repLeft "4258"; repStart "-885"; chr1 rmsk exon 154304681 154304954 783 - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0111"; repClass "LTR"; repEnd "4257"; repFamily "ERVL"; repLeft "3972"; repStart "-969"; chr1 rmsk exon 154305174 154305379 903 - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0111"; repClass "LTR"; repEnd "3974"; repFamily "ERVL"; repLeft "3746"; repStart "-1252"; chr1 rmsk exon 154305525 154306031 2461 - . gene_id "ERV316A3_1q21.3e"; transcript_id "ERV316A3_1q21.3e"; locus "ERV316A3_1q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0111"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "3234"; repStart "-1505"; ### ERV316A3_1q21.3f ### chr1 rmsk gene 154306075 154308655 . - . gene_id "ERV316A3_1q21.3f"; transcript_id "ERV316A3_1q21.3f"; locus "ERV316A3_1q21.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0112"; model_cov "1121"; model_pct "21.5"; chr1 rmsk exon 154306075 154306867 2461 - . gene_id "ERV316A3_1q21.3f"; transcript_id "ERV316A3_1q21.3f"; locus "ERV316A3_1q21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0112"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "2956"; repStart "-1505"; chr1 rmsk exon 154308324 154308655 812 - . gene_id "ERV316A3_1q21.3f"; transcript_id "ERV316A3_1q21.3f"; locus "ERV316A3_1q21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0112"; repClass "LTR"; repEnd "577"; repFamily "ERVL"; repLeft "221"; repStart "-4649"; ### MER41_1q21.3b ### chr1 rmsk gene 154316048 154318840 . + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0022"; model_cov "1811"; model_pct "30.5"; chr1 rmsk exon 154316048 154316085 270 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0022"; repClass "LTR"; repEnd "2932"; repFamily "ERV1"; repLeft "-3014"; repStart "2895"; chr1 rmsk exon 154316068 154316245 11595 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0022"; repClass "LTR"; repEnd "4353"; repFamily "ERV1"; repLeft "-1593"; repStart "4168"; chr1 rmsk exon 154316543 154317978 11595 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0022"; repClass "LTR"; repEnd "5789"; repFamily "ERV1"; repLeft "-157"; repStart "4354"; chr1 rmsk exon 154318275 154318445 11595 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0022"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5790"; chr1 rmsk exon 154318446 154318591 1011 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0022"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-408"; repStart "1"; chr1 rmsk exon 154318612 154318840 2265 + . gene_id "MER41_1q21.3b"; transcript_id "MER41_1q21.3b"; locus "MER41_1q21.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0022"; repClass "LTR"; repEnd "488"; repFamily "ERV1"; repLeft "-66"; repStart "260"; ### HERVW_1q22 ### chr1 rmsk gene 155622390 155626664 . - . gene_id "HERVW_1q22"; transcript_id "HERVW_1q22"; locus "HERVW_1q22"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0014"; model_cov "3104"; model_pct "36.0"; chr1 rmsk exon 155622390 155623035 3270 - . gene_id "HERVW_1q22"; transcript_id "HERVW_1q22"; locus "HERVW_1q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0014"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7979"; repStart "0"; chr1 rmsk exon 155623674 155623783 3270 - . gene_id "HERVW_1q22"; transcript_id "HERVW_1q22"; locus "HERVW_1q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0014"; repClass "LTR"; repEnd "7978"; repFamily "ERV1"; repLeft "7895"; repStart "-648"; chr1 rmsk exon 155623774 155623954 13666 - . gene_id "HERVW_1q22"; transcript_id "HERVW_1q22"; locus "HERVW_1q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0014"; repClass "LTR"; repEnd "4259"; repFamily "ERV1"; repLeft "4085"; repStart "-4367"; chr1 rmsk exon 155624467 155626664 13666 - . gene_id "HERVW_1q22"; transcript_id "HERVW_1q22"; locus "HERVW_1q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0014"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "1884"; repStart "-4542"; ### HML2_1q22 ### chr1 rmsk gene 155626666 155635845 . - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0011"; model_cov "7148"; model_pct "94.9"; chr1 rmsk exon 155626666 155627633 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 155627729 155629344 14971 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr1 rmsk exon 155629344 155634877 50700 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr1 rmsk exon 155634878 155635845 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_1q22 ### chr1 rmsk gene 155637970 155646274 . - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0011"; model_cov "5051"; model_pct "70.3"; chr1 rmsk exon 155637970 155638084 20887 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "5051"; repFamily "ERV1"; repLeft "4940"; repStart "-2137"; chr1 rmsk exon 155638398 155639959 20887 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "4939"; repFamily "ERV1"; repLeft "3334"; repStart "-2249"; chr1 rmsk exon 155640266 155641088 20887 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "3333"; repFamily "ERV1"; repLeft "2532"; repStart "-3855"; chr1 rmsk exon 155641380 155642181 20887 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "2531"; repFamily "ERV1"; repLeft "1689"; repStart "-4657"; chr1 rmsk exon 155643220 155644368 7323 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "1694"; repFamily "ERV1"; repLeft "493"; repStart "-5494"; chr1 rmsk exon 155644972 155645450 7323 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "492"; repFamily "ERV1"; repLeft "1"; repStart "-6696"; chr1 rmsk exon 155645451 155646274 5437 - . gene_id "LTR25_1q22"; transcript_id "LTR25_1q22"; locus "LTR25_1q22"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0011"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_1q22a ### chr1 rmsk gene 155650269 155652714 . - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0008"; model_cov "888"; model_pct "13.6"; chr1 rmsk exon 155650269 155650610 1540 - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0008"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "257"; repStart "0"; chr1 rmsk exon 155650609 155650644 263 - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0008"; repClass "LTR"; repEnd "36"; repFamily "ERV1"; repLeft "1"; repStart "-598"; chr1 rmsk exon 155650646 155651121 1643 - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0008"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "6263"; repStart "-2"; chr1 rmsk exon 155651440 155651986 1089 - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0008"; repClass "LTR"; repEnd "6073"; repFamily "ERV1"; repLeft "5535"; repStart "-466"; chr1 rmsk exon 155652635 155652714 308 - . gene_id "HERV4_1q22a"; transcript_id "HERV4_1q22a"; locus "HERV4_1q22a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0008"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "4788"; repStart "-1675"; ### HERV4_1q22b ### chr1 rmsk gene 155652865 155659627 . - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0009"; model_cov "5601"; model_pct "85.7"; chr1 rmsk exon 155652865 155653497 18728 - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0009"; repClass "LTR"; repEnd "6267"; repFamily "ERV1"; repLeft "5630"; repStart "-272"; chr1 rmsk exon 155653794 155656006 18728 - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0009"; repClass "LTR"; repEnd "5629"; repFamily "ERV1"; repLeft "3367"; repStart "-910"; chr1 rmsk exon 155655994 155658020 11828 - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0009"; repClass "LTR"; repEnd "2972"; repFamily "ERV1"; repLeft "951"; repStart "-3567"; chr1 rmsk exon 155658327 155658967 11828 - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0009"; repClass "LTR"; repEnd "950"; repFamily "ERV1"; repLeft "269"; repStart "-5589"; chr1 rmsk exon 155659363 155659627 1139 - . gene_id "HERV4_1q22b"; transcript_id "HERV4_1q22b"; locus "HERV4_1q22b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0009"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "162"; repStart "0"; ### HERVKC4_1q22 ### chr1 rmsk gene 155691833 155699521 . - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0003"; model_cov "5253"; model_pct "99.8"; chr1 rmsk exon 155691833 155692373 3588 - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0003"; repClass "LTR"; repEnd "544"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chr1 rmsk exon 155692376 155693679 21938 - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0003"; repClass "LTR"; repEnd "5256"; repFamily "ERVK"; repLeft "3950"; repStart "-6"; chr1 rmsk exon 155693985 155697375 21938 - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0003"; repClass "LTR"; repEnd "3949"; repFamily "ERVK"; repLeft "525"; repStart "-1313"; chr1 rmsk exon 155698455 155698977 21938 - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0003"; repClass "LTR"; repEnd "524"; repFamily "ERVK"; repLeft "1"; repStart "-4738"; chr1 rmsk exon 155698978 155699521 3752 - . gene_id "HERVKC4_1q22"; transcript_id "HERVKC4_1q22"; locus "HERVKC4_1q22"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0003"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HML5_1q22 ### chr1 rmsk gene 156184304 156189713 . - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0004"; model_cov "6273"; model_pct "91.8"; chr1 rmsk exon 156184304 156184624 2729 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "337"; repFamily "ERVK"; repLeft "1"; repStart "-170"; chr1 rmsk exon 156184625 156185037 1992 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "4747"; repStart "-1734"; chr1 rmsk exon 156185008 156187410 18912 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "417"; repStart "-1758"; chr1 rmsk exon 156187723 156188067 18912 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "2681"; repFamily "ERVK"; repLeft "2329"; repStart "-4156"; chr1 rmsk exon 156188065 156188404 5670 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "575"; repStart "-5932"; chr1 rmsk exon 156188703 156189245 5670 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "574"; repFamily "ERVK"; repLeft "1"; repStart "-6263"; chr1 rmsk exon 156189246 156189713 2905 - . gene_id "HML5_1q22"; transcript_id "HML5_1q22"; locus "HML5_1q22"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0004"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_1q22 ### chr1 rmsk gene 156352219 156354825 . - . gene_id "ERVLB4_1q22"; transcript_id "ERVLB4_1q22"; locus "ERVLB4_1q22"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0075"; model_cov "1890"; model_pct "33.1"; chr1 rmsk exon 156352219 156352423 2064 - . gene_id "ERVLB4_1q22"; transcript_id "ERVLB4_1q22"; locus "ERVLB4_1q22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0075"; repClass "LTR"; repEnd "2775"; repFamily "ERVL"; repLeft "2572"; repStart "-2939"; chr1 rmsk exon 156352731 156353138 2064 - . gene_id "ERVLB4_1q22"; transcript_id "ERVLB4_1q22"; locus "ERVLB4_1q22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0075"; repClass "LTR"; repEnd "2571"; repFamily "ERVL"; repLeft "2216"; repStart "-3143"; chr1 rmsk exon 156353300 156353766 2064 - . gene_id "ERVLB4_1q22"; transcript_id "ERVLB4_1q22"; locus "ERVLB4_1q22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0075"; repClass "LTR"; repEnd "2215"; repFamily "ERVL"; repLeft "1741"; repStart "-3499"; chr1 rmsk exon 156353990 156354825 440 - . gene_id "ERVLB4_1q22"; transcript_id "ERVLB4_1q22"; locus "ERVLB4_1q22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0075"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "731"; repStart "-4125"; ### ERVLE_1q23.1a ### chr1 rmsk gene 156633288 156635215 . - . gene_id "ERVLE_1q23.1a"; transcript_id "ERVLE_1q23.1a"; locus "ERVLE_1q23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0220"; model_cov "1639"; model_pct "28.9"; chr1 rmsk exon 156633288 156634017 4253 - . gene_id "ERVLE_1q23.1a"; transcript_id "ERVLE_1q23.1a"; locus "ERVLE_1q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0220"; repClass "LTR"; repEnd "4956"; repFamily "ERVL"; repLeft "4225"; repStart "-711"; chr1 rmsk exon 156634330 156635215 4253 - . gene_id "ERVLE_1q23.1a"; transcript_id "ERVLE_1q23.1a"; locus "ERVLE_1q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0220"; repClass "LTR"; repEnd "4224"; repFamily "ERVL"; repLeft "3316"; repStart "-1443"; ### ERVLE_1q23.1b ### chr1 rmsk gene 156822631 156823980 . - . gene_id "ERVLE_1q23.1b"; transcript_id "ERVLE_1q23.1b"; locus "ERVLE_1q23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0221"; model_cov "1380"; model_pct "24.4"; chr1 rmsk exon 156822631 156823980 2401 - . gene_id "ERVLE_1q23.1b"; transcript_id "ERVLE_1q23.1b"; locus "ERVLE_1q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0221"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "3896"; repStart "-391"; ### ERVLE_1q23.1c ### chr1 rmsk gene 156824049 156825375 . - . gene_id "ERVLE_1q23.1c"; transcript_id "ERVLE_1q23.1c"; locus "ERVLE_1q23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0222"; model_cov "1049"; model_pct "18.5"; chr1 rmsk exon 156824049 156824895 2401 - . gene_id "ERVLE_1q23.1c"; transcript_id "ERVLE_1q23.1c"; locus "ERVLE_1q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0222"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "4409"; repStart "-391"; chr1 rmsk exon 156825189 156825375 2401 - . gene_id "ERVLE_1q23.1c"; transcript_id "ERVLE_1q23.1c"; locus "ERVLE_1q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0222"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "2845"; repStart "-2640"; ### ERVLE_1q23.1d ### chr1 rmsk gene 157227206 157228458 . - . gene_id "ERVLE_1q23.1d"; transcript_id "ERVLE_1q23.1d"; locus "ERVLE_1q23.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0223"; model_cov "844"; model_pct "14.9"; chr1 rmsk exon 157227206 157227420 1587 - . gene_id "ERVLE_1q23.1d"; transcript_id "ERVLE_1q23.1d"; locus "ERVLE_1q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0223"; repClass "LTR"; repEnd "3490"; repFamily "ERVL"; repLeft "3275"; repStart "-2177"; chr1 rmsk exon 157227833 157228332 1587 - . gene_id "ERVLE_1q23.1d"; transcript_id "ERVLE_1q23.1d"; locus "ERVLE_1q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0223"; repClass "LTR"; repEnd "3274"; repFamily "ERVL"; repLeft "2753"; repStart "-2393"; chr1 rmsk exon 157228348 157228458 280 - . gene_id "ERVLE_1q23.1d"; transcript_id "ERVLE_1q23.1d"; locus "ERVLE_1q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0223"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "2608"; repStart "-2951"; ### HERVFH21_1q23.1 ### chr1 rmsk gene 157273298 157279886 . - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0004"; model_cov "6046"; model_pct "92.6"; chr1 rmsk exon 157273298 157273792 2644 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 157273793 157274117 2655 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "6204"; repStart "0"; chr1 rmsk exon 157274152 157274284 2655 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "6203"; repFamily "ERV1"; repLeft "6075"; repStart "-326"; chr1 rmsk exon 157274283 157274400 796 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "5747"; repFamily "ERV1"; repLeft "5630"; repStart "-782"; chr1 rmsk exon 157274376 157275504 5033 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "4802"; repFamily "ERV1"; repLeft "3586"; repStart "-1727"; chr1 rmsk exon 157275504 157279383 10773 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "4136"; repFamily "ERV1"; repLeft "-124"; repStart "-2393"; chr1 rmsk exon 157279384 157279886 2771 - . gene_id "HERVFH21_1q23.1"; transcript_id "HERVFH21_1q23.1"; locus "HERVFH21_1q23.1"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0004"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_1q23.1 ### chr1 rmsk gene 157325277 157331991 . + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0044"; model_cov "7035"; model_pct "100.0"; chr1 rmsk exon 157325277 157325733 2759 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0044"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 157325739 157326800 3351 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0044"; repClass "LTR"; repEnd "-658"; repFamily "ERV1"; repLeft "-7256"; repStart "-1671"; chr1 rmsk exon 157326908 157327236 1524 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0044"; repClass "LTR"; repEnd "1271"; repFamily "ERV1"; repLeft "-5327"; repStart "993"; chr1 rmsk exon 157327236 157327896 3820 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0044"; repClass "LTR"; repEnd "2394"; repFamily "ERV1"; repLeft "-4204"; repStart "1481"; chr1 rmsk exon 157328068 157328165 765 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0044"; repClass "LTR"; repEnd "2493"; repFamily "ERV1"; repLeft "-4105"; repStart "2396"; chr1 rmsk exon 157328396 157331522 15783 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0044"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "1862"; chr1 rmsk exon 157331531 157331991 2716 + . gene_id "MER4_1q23.1"; transcript_id "MER4_1q23.1"; locus "MER4_1q23.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0044"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLA_1q23.1a ### chr1 rmsk gene 157356841 157359358 . + . gene_id "PABLA_1q23.1a"; transcript_id "PABLA_1q23.1a"; locus "PABLA_1q23.1a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0005"; model_cov "2083"; model_pct "41.5"; chr1 rmsk exon 157356841 157357213 2401 + . gene_id "PABLA_1q23.1a"; transcript_id "PABLA_1q23.1a"; locus "PABLA_1q23.1a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0005"; repClass "LTR"; repEnd "401"; repFamily "ERV1"; repLeft "-259"; repStart "1"; chr1 rmsk exon 157357213 157357280 549 + . gene_id "PABLA_1q23.1a"; transcript_id "PABLA_1q23.1a"; locus "PABLA_1q23.1a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0005"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "593"; chr1 rmsk exon 157357281 157357767 3611 + . gene_id "PABLA_1q23.1a"; transcript_id "PABLA_1q23.1a"; locus "PABLA_1q23.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0005"; repClass "LTR"; repEnd "488"; repFamily "ERV1"; repLeft "-4527"; repStart "1"; chr1 rmsk exon 157357768 157359358 12210 + . gene_id "PABLA_1q23.1a"; transcript_id "PABLA_1q23.1a"; locus "PABLA_1q23.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0005"; repClass "LTR"; repEnd "4486"; repFamily "ERV1"; repLeft "-529"; repStart "2890"; ### MER61_1q23.1a ### chr1 rmsk gene 157364531 157367112 . - . gene_id "MER61_1q23.1a"; transcript_id "MER61_1q23.1a"; locus "MER61_1q23.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0023"; model_cov "1903"; model_pct "36.5"; chr1 rmsk exon 157364531 157364849 1738 - . gene_id "MER61_1q23.1a"; transcript_id "MER61_1q23.1a"; locus "MER61_1q23.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0023"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 157364850 157366101 6123 - . gene_id "MER61_1q23.1a"; transcript_id "MER61_1q23.1a"; locus "MER61_1q23.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0023"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3915"; repStart "0"; chr1 rmsk exon 157366080 157366785 2669 - . gene_id "MER61_1q23.1a"; transcript_id "MER61_1q23.1a"; locus "MER61_1q23.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0023"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "7"; repStart "-4609"; chr1 rmsk exon 157366792 157367112 1583 - . gene_id "MER61_1q23.1a"; transcript_id "MER61_1q23.1a"; locus "MER61_1q23.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0023"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_1q23.1 ### chr1 rmsk gene 157429092 157433731 . + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0005"; model_cov "3471"; model_pct "80.2"; chr1 rmsk exon 157429092 157429631 3497 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 157429633 157431415 13008 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1"; chr1 rmsk exon 157431396 157433057 10896 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chr1 rmsk exon 157433058 157433459 3302 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "1"; chr1 rmsk exon 157433459 157433529 490 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-209"; repStart "331"; chr1 rmsk exon 157433530 157433731 1145 + . gene_id "HERVL66_1q23.1"; transcript_id "HERVL66_1q23.1"; locus "HERVL66_1q23.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0005"; repClass "LTR"; repEnd "541"; repFamily "ERVL"; repLeft "-69"; repStart "331"; ### LTR19_1q23.1 ### chr1 rmsk gene 157433733 157436182 . + . gene_id "LTR19_1q23.1"; transcript_id "LTR19_1q23.1"; locus "LTR19_1q23.1"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0004"; model_cov "1963"; model_pct "35.1"; chr1 rmsk exon 157433733 157434239 2224 + . gene_id "LTR19_1q23.1"; transcript_id "LTR19_1q23.1"; locus "LTR19_1q23.1"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0004"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 157434240 157435233 7031 + . gene_id "LTR19_1q23.1"; transcript_id "LTR19_1q23.1"; locus "LTR19_1q23.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0004"; repClass "LTR"; repEnd "1003"; repFamily "ERV1"; repLeft "-4583"; repStart "1"; chr1 rmsk exon 157435240 157435324 664 + . gene_id "LTR19_1q23.1"; transcript_id "LTR19_1q23.1"; locus "LTR19_1q23.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0004"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "-4302"; repStart "1200"; chr1 rmsk exon 157435322 157436182 6427 + . gene_id "LTR19_1q23.1"; transcript_id "LTR19_1q23.1"; locus "LTR19_1q23.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0004"; repClass "LTR"; repEnd "2313"; repFamily "ERV1"; repLeft "-3273"; repStart "1436"; ### PABLA_1q23.1b ### chr1 rmsk gene 157441711 157448932 . - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0006"; model_cov "4738"; model_pct "94.5"; chr1 rmsk exon 157441711 157442356 4616 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 157442357 157445227 16134 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "1738"; repStart "0"; chr1 rmsk exon 157445408 157445437 4064 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1623"; repStart "-3366"; chr1 rmsk exon 157446847 157447428 4064 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "1622"; repFamily "ERV1"; repLeft "1038"; repStart "-3393"; chr1 rmsk exon 157447427 157448277 5898 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "853"; repFamily "ERV1"; repLeft "2"; repStart "-4162"; chr1 rmsk exon 157448280 157448932 4775 - . gene_id "PABLA_1q23.1b"; transcript_id "PABLA_1q23.1b"; locus "PABLA_1q23.1b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0006"; repClass "LTR"; repEnd "658"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_1q23.1a ### chr1 rmsk gene 157456874 157463360 . - . gene_id "HERVL_1q23.1a"; transcript_id "HERVL_1q23.1a"; locus "HERVL_1q23.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0080"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 157456874 157457316 3147 - . gene_id "HERVL_1q23.1a"; transcript_id "HERVL_1q23.1a"; locus "HERVL_1q23.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0080"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 157457317 157462927 43434 - . gene_id "HERVL_1q23.1a"; transcript_id "HERVL_1q23.1a"; locus "HERVL_1q23.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0080"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 157462928 157463360 3190 - . gene_id "HERVL_1q23.1a"; transcript_id "HERVL_1q23.1a"; locus "HERVL_1q23.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0080"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_1q23.1e ### chr1 rmsk gene 157464542 157465764 . + . gene_id "ERVLE_1q23.1e"; transcript_id "ERVLE_1q23.1e"; locus "ERVLE_1q23.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0224"; model_cov "838"; model_pct "14.8"; chr1 rmsk exon 157464542 157465137 1396 + . gene_id "ERVLE_1q23.1e"; transcript_id "ERVLE_1q23.1e"; locus "ERVLE_1q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0224"; repClass "LTR"; repEnd "3279"; repFamily "ERVL"; repLeft "-2388"; repStart "2656"; chr1 rmsk exon 157465550 157465764 1396 + . gene_id "ERVLE_1q23.1e"; transcript_id "ERVLE_1q23.1e"; locus "ERVLE_1q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0224"; repClass "LTR"; repEnd "3489"; repFamily "ERVL"; repLeft "-2178"; repStart "3274"; ### MER61_1q23.1b ### chr1 rmsk gene 157499145 157505063 . + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0024"; model_cov "3500"; model_pct "67.1"; chr1 rmsk exon 157499145 157499470 1789 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0024"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 157499477 157499986 2224 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0024"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-4717"; repStart "7"; chr1 rmsk exon 157500003 157501521 20859 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0024"; repClass "LTR"; repEnd "3012"; repFamily "ERV1"; repLeft "-2205"; repStart "2207"; chr1 rmsk exon 157502273 157503394 20859 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0024"; repClass "LTR"; repEnd "4152"; repFamily "ERV1"; repLeft "-1065"; repStart "3013"; chr1 rmsk exon 157503706 157504743 20859 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0024"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4153"; chr1 rmsk exon 157504745 157505063 1798 + . gene_id "MER61_1q23.1b"; transcript_id "MER61_1q23.1b"; locus "MER61_1q23.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0024"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-1"; repStart "2"; ### HERVL_1q23.1b ### chr1 rmsk gene 157571521 157572818 . + . gene_id "HERVL_1q23.1b"; transcript_id "HERVL_1q23.1b"; locus "HERVL_1q23.1b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0081"; model_cov "1450"; model_pct "25.6"; chr1 rmsk exon 157571521 157572818 1870 + . gene_id "HERVL_1q23.1b"; transcript_id "HERVL_1q23.1b"; locus "HERVL_1q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0081"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "-1292"; repStart "2912"; ### ERVLE_1q23.1f ### chr1 rmsk gene 157650881 157651732 . + . gene_id "ERVLE_1q23.1f"; transcript_id "ERVLE_1q23.1f"; locus "ERVLE_1q23.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0226"; model_cov "876"; model_pct "15.5"; chr1 rmsk exon 157650881 157651732 2932 + . gene_id "ERVLE_1q23.1f"; transcript_id "ERVLE_1q23.1f"; locus "ERVLE_1q23.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0226"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "-1955"; repStart "2836"; ### ERVLB4_1q23.1a ### chr1 rmsk gene 157823567 157827775 . - . gene_id "ERVLB4_1q23.1a"; transcript_id "ERVLB4_1q23.1a"; locus "ERVLB4_1q23.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0078"; model_cov "3743"; model_pct "65.5"; chr1 rmsk exon 157823567 157824456 5227 - . gene_id "ERVLB4_1q23.1a"; transcript_id "ERVLB4_1q23.1a"; locus "ERVLB4_1q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0078"; repClass "LTR"; repEnd "4400"; repFamily "ERVL"; repLeft "3505"; repStart "-1314"; chr1 rmsk exon 157824460 157827220 11621 - . gene_id "ERVLB4_1q23.1a"; transcript_id "ERVLB4_1q23.1a"; locus "ERVLB4_1q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0078"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "5"; repStart "-2861"; chr1 rmsk exon 157827225 157827263 1832 - . gene_id "ERVLB4_1q23.1a"; transcript_id "ERVLB4_1q23.1a"; locus "ERVLB4_1q23.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0078"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "471"; repStart "0"; chr1 rmsk exon 157827314 157827775 1832 - . gene_id "ERVLB4_1q23.1a"; transcript_id "ERVLB4_1q23.1a"; locus "ERVLB4_1q23.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0078"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "2"; repStart "-50"; ### HERVL_1q23.1c ### chr1 rmsk gene 157883692 157886471 . + . gene_id "HERVL_1q23.1c"; transcript_id "HERVL_1q23.1c"; locus "HERVL_1q23.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0082"; model_cov "2192"; model_pct "38.8"; chr1 rmsk exon 157883692 157883799 775 + . gene_id "HERVL_1q23.1c"; transcript_id "HERVL_1q23.1c"; locus "HERVL_1q23.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0082"; repClass "LTR"; repEnd "108"; repFamily "ERVL"; repLeft "-345"; repStart "1"; chr1 rmsk exon 157883837 157886030 16067 + . gene_id "HERVL_1q23.1c"; transcript_id "HERVL_1q23.1c"; locus "HERVL_1q23.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0082"; repClass "LTR"; repEnd "5648"; repFamily "ERVL"; repLeft "-6"; repStart "3456"; chr1 rmsk exon 157886031 157886471 2897 + . gene_id "HERVL_1q23.1c"; transcript_id "HERVL_1q23.1c"; locus "HERVL_1q23.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0082"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### ERVLE_1q23.1g ### chr1 rmsk gene 157936895 157937530 . + . gene_id "ERVLE_1q23.1g"; transcript_id "ERVLE_1q23.1g"; locus "ERVLE_1q23.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0227"; model_cov "679"; model_pct "12.0"; chr1 rmsk exon 157936895 157937328 1496 + . gene_id "ERVLE_1q23.1g"; transcript_id "ERVLE_1q23.1g"; locus "ERVLE_1q23.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0227"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "-2810"; repStart "2383"; chr1 rmsk exon 157937327 157937530 1004 + . gene_id "ERVLE_1q23.1g"; transcript_id "ERVLE_1q23.1g"; locus "ERVLE_1q23.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0227"; repClass "LTR"; repEnd "3385"; repFamily "ERVL"; repLeft "-2282"; repStart "3180"; ### MER34B_1q23.1 ### chr1 rmsk gene 158169442 158173029 . + . gene_id "MER34B_1q23.1"; transcript_id "MER34B_1q23.1"; locus "MER34B_1q23.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0023"; model_cov "2957"; model_pct "55.2"; chr1 rmsk exon 158169442 158169701 778 + . gene_id "MER34B_1q23.1"; transcript_id "MER34B_1q23.1"; locus "MER34B_1q23.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0023"; repClass "LTR"; repEnd "-534"; repFamily "ERV1"; repLeft "-5890"; repStart "-828"; chr1 rmsk exon 158170021 158170280 681 + . gene_id "MER34B_1q23.1"; transcript_id "MER34B_1q23.1"; locus "MER34B_1q23.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0023"; repClass "LTR"; repEnd "1463"; repFamily "ERV1"; repLeft "-3893"; repStart "1027"; chr1 rmsk exon 158170251 158171823 3632 + . gene_id "MER34B_1q23.1"; transcript_id "MER34B_1q23.1"; locus "MER34B_1q23.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0023"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-2026"; repStart "1789"; chr1 rmsk exon 158172323 158173029 2635 + . gene_id "MER34B_1q23.1"; transcript_id "MER34B_1q23.1"; locus "MER34B_1q23.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0023"; repClass "LTR"; repEnd "4004"; repFamily "ERV1"; repLeft "-1352"; repStart "3318"; ### ERVLE_1q23.1h ### chr1 rmsk gene 158393156 158393769 . - . gene_id "ERVLE_1q23.1h"; transcript_id "ERVLE_1q23.1h"; locus "ERVLE_1q23.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0228"; model_cov "619"; model_pct "10.9"; chr1 rmsk exon 158393156 158393599 555 - . gene_id "ERVLE_1q23.1h"; transcript_id "ERVLE_1q23.1h"; locus "ERVLE_1q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0228"; repClass "LTR"; repEnd "4150"; repFamily "ERVL"; repLeft "3690"; repStart "-1517"; chr1 rmsk exon 158393632 158393769 290 - . gene_id "ERVLE_1q23.1h"; transcript_id "ERVLE_1q23.1h"; locus "ERVLE_1q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0228"; repClass "LTR"; repEnd "3618"; repFamily "ERVL"; repLeft "3459"; repStart "-2049"; ### ERVLE_1q23.1i ### chr1 rmsk gene 158405972 158407218 . - . gene_id "ERVLE_1q23.1i"; transcript_id "ERVLE_1q23.1i"; locus "ERVLE_1q23.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0229"; model_cov "1242"; model_pct "21.9"; chr1 rmsk exon 158405972 158407218 1402 - . gene_id "ERVLE_1q23.1i"; transcript_id "ERVLE_1q23.1i"; locus "ERVLE_1q23.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0229"; repClass "LTR"; repEnd "2001"; repFamily "ERVL"; repLeft "759"; repStart "-3666"; ### ERVLB4_1q23.1b ### chr1 rmsk gene 158695922 158697077 . + . gene_id "ERVLB4_1q23.1b"; transcript_id "ERVLB4_1q23.1b"; locus "ERVLB4_1q23.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0079"; model_cov "815"; model_pct "14.3"; chr1 rmsk exon 158695922 158696089 935 + . gene_id "ERVLB4_1q23.1b"; transcript_id "ERVLB4_1q23.1b"; locus "ERVLB4_1q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0079"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "-4584"; repStart "918"; chr1 rmsk exon 158696127 158696171 915 + . gene_id "ERVLB4_1q23.1b"; transcript_id "ERVLB4_1q23.1b"; locus "ERVLB4_1q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0079"; repClass "LTR"; repEnd "1197"; repFamily "ERVL"; repLeft "-4517"; repStart "1131"; chr1 rmsk exon 158696172 158696721 2762 + . gene_id "ERVLB4_1q23.1b"; transcript_id "ERVLB4_1q23.1b"; locus "ERVLB4_1q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0079"; repClass "LTR"; repEnd "5559"; repFamily "ERVL"; repLeft "-155"; repStart "5022"; chr1 rmsk exon 158696723 158697077 1388 + . gene_id "ERVLB4_1q23.1b"; transcript_id "ERVLB4_1q23.1b"; locus "ERVLB4_1q23.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0079"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "162"; ### HML5_1q23.1 ### chr1 rmsk gene 158947555 158952739 . - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0005"; model_cov "3857"; model_pct "56.4"; chr1 rmsk exon 158947555 158948052 3064 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 158948055 158949381 22092 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "5509"; repStart "-2"; chr1 rmsk exon 158949824 158951661 22092 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "5508"; repFamily "ERVK"; repLeft "3655"; repStart "-1329"; chr1 rmsk exon 158951661 158951713 385 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "2493"; repStart "-4292"; chr1 rmsk exon 158951706 158951785 450 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "2829"; repStart "-3930"; chr1 rmsk exon 158951785 158951928 834 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "2327"; repStart "-4364"; chr1 rmsk exon 158952347 158952739 2243 - . gene_id "HML5_1q23.1"; transcript_id "HML5_1q23.1"; locus "HML5_1q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0005"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "339"; repStart "-6096"; ### HERVIP10FH_1q23.1 ### chr1 rmsk gene 159022297 159025513 . - . gene_id "HERVIP10FH_1q23.1"; transcript_id "HERVIP10FH_1q23.1"; locus "HERVIP10FH_1q23.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0010"; model_cov "2604"; model_pct "51.0"; chr1 rmsk exon 159022297 159022871 4363 - . gene_id "HERVIP10FH_1q23.1"; transcript_id "HERVIP10FH_1q23.1"; locus "HERVIP10FH_1q23.1"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0010"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "11"; repStart "-4"; chr1 rmsk exon 159022896 159025513 6565 - . gene_id "HERVIP10FH_1q23.1"; transcript_id "HERVIP10FH_1q23.1"; locus "HERVIP10FH_1q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0010"; repClass "LTR"; repEnd "5072"; repFamily "ERV1"; repLeft "2468"; repStart "-30"; ### MER61_1q23.1c ### chr1 rmsk gene 159056048 159059052 . - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0025"; model_cov "2057"; model_pct "39.4"; chr1 rmsk exon 159056048 159056380 2170 - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0025"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 159056381 159057266 5749 - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0025"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4281"; repStart "0"; chr1 rmsk exon 159057266 159058070 5566 - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0025"; repClass "LTR"; repEnd "4118"; repFamily "ERV1"; repLeft "3329"; repStart "-1099"; chr1 rmsk exon 159058376 159058717 1521 - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0025"; repClass "LTR"; repEnd "333"; repFamily "ERV1"; repLeft "1"; repStart "-4884"; chr1 rmsk exon 159058718 159059052 2284 - . gene_id "MER61_1q23.1c"; transcript_id "MER61_1q23.1c"; locus "MER61_1q23.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0025"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1q23.2a ### chr1 rmsk gene 159338797 159340297 . + . gene_id "ERVLE_1q23.2a"; transcript_id "ERVLE_1q23.2a"; locus "ERVLE_1q23.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0231"; model_cov "1132"; model_pct "20.0"; chr1 rmsk exon 159338797 159338996 515 + . gene_id "ERVLE_1q23.2a"; transcript_id "ERVLE_1q23.2a"; locus "ERVLE_1q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0231"; repClass "LTR"; repEnd "1093"; repFamily "ERVL"; repLeft "-4574"; repStart "885"; chr1 rmsk exon 159339014 159339624 802 + . gene_id "ERVLE_1q23.2a"; transcript_id "ERVLE_1q23.2a"; locus "ERVLE_1q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0231"; repClass "LTR"; repEnd "1926"; repFamily "ERVL"; repLeft "-3741"; repStart "1324"; chr1 rmsk exon 159340000 159340148 802 + . gene_id "ERVLE_1q23.2a"; transcript_id "ERVLE_1q23.2a"; locus "ERVLE_1q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0231"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "-3578"; repStart "1927"; chr1 rmsk exon 159340143 159340297 562 + . gene_id "ERVLE_1q23.2a"; transcript_id "ERVLE_1q23.2a"; locus "ERVLE_1q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0231"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "-2581"; repStart "2926"; ### ERV316A3_1q23.2 ### chr1 rmsk gene 159475002 159478088 . + . gene_id "ERV316A3_1q23.2"; transcript_id "ERV316A3_1q23.2"; locus "ERV316A3_1q23.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0114"; model_cov "2694"; model_pct "51.5"; chr1 rmsk exon 159475002 159477679 8709 + . gene_id "ERV316A3_1q23.2"; transcript_id "ERV316A3_1q23.2"; locus "ERV316A3_1q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0114"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2532"; chr1 rmsk exon 159477705 159478088 1143 + . gene_id "ERV316A3_1q23.2"; transcript_id "ERV316A3_1q23.2"; locus "ERV316A3_1q23.2"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0114"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "26"; ### ERVLE_1q23.2d ### chr1 rmsk gene 159516161 159518192 . + . gene_id "ERVLE_1q23.2d"; transcript_id "ERVLE_1q23.2d"; locus "ERVLE_1q23.2d"; category "opposite*"; intModel "ERVL-E-int"; locid "ERVL-E-int_0233"; model_cov "1293"; model_pct "22.8"; chr1 rmsk exon 159516161 159516946 2587 + . gene_id "ERVLE_1q23.2d"; transcript_id "ERVLE_1q23.2d"; locus "ERVLE_1q23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0233"; prev_strand "-"; repClass "LTR"; repEnd "2751"; repFamily "ERVL"; repLeft "1964"; repStart "-2916"; chr1 rmsk exon 159516946 159517278 810 + . gene_id "ERVLE_1q23.2d"; transcript_id "ERVLE_1q23.2d"; locus "ERVLE_1q23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0233"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "-3693"; repStart "1642"; chr1 rmsk exon 159517278 159518192 3208 + . gene_id "ERVLE_1q23.2d"; transcript_id "ERVLE_1q23.2d"; locus "ERVLE_1q23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0233"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "-759"; repStart "3947"; ### HERVL_1q23.2 ### chr1 rmsk gene 159643998 159645594 . + . gene_id "HERVL_1q23.2"; transcript_id "HERVL_1q23.2"; locus "HERVL_1q23.2"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0083"; model_cov "565"; model_pct "10.0"; chr1 rmsk exon 159643998 159644097 476 + . gene_id "HERVL_1q23.2"; transcript_id "HERVL_1q23.2"; locus "HERVL_1q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0083"; repClass "LTR"; repEnd "2683"; repFamily "ERVL"; repLeft "-2971"; repStart "2583"; chr1 rmsk exon 159644687 159644724 476 + . gene_id "HERVL_1q23.2"; transcript_id "HERVL_1q23.2"; locus "HERVL_1q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0083"; repClass "LTR"; repEnd "2717"; repFamily "ERVL"; repLeft "-2937"; repStart "2684"; chr1 rmsk exon 159645159 159645362 482 + . gene_id "HERVL_1q23.2"; transcript_id "HERVL_1q23.2"; locus "HERVL_1q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0083"; repClass "LTR"; repEnd "4146"; repFamily "ERVL"; repLeft "-1508"; repStart "3930"; chr1 rmsk exon 159645387 159645594 557 + . gene_id "HERVL_1q23.2"; transcript_id "HERVL_1q23.2"; locus "HERVL_1q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0083"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "-1116"; repStart "4322"; ### MER4B_1q23.2 ### chr1 rmsk gene 159667533 159671585 . - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0031"; model_cov "2339"; model_pct "34.6"; chr1 rmsk exon 159667533 159668071 5049 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "1"; repStart "-209"; chr1 rmsk exon 159668916 159669187 1536 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "6369"; repStart "-113"; chr1 rmsk exon 159669243 159670612 7265 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "6310"; repFamily "ERV1"; repLeft "4861"; repStart "-448"; chr1 rmsk exon 159670925 159671251 7265 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "4860"; repFamily "ERV1"; repLeft "4452"; repStart "-1898"; chr1 rmsk exon 159671262 159671329 375 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "2576"; repFamily "ERV1"; repLeft "2505"; repStart "-4182"; chr1 rmsk exon 159671328 159671469 797 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "137"; repFamily "ERV1"; repLeft "2"; repStart "-6621"; chr1 rmsk exon 159671472 159671585 857 - . gene_id "MER4B_1q23.2"; transcript_id "MER4B_1q23.2"; locus "MER4B_1q23.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0031"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "653"; repStart "-1"; ### ERVLE_1q23.2b ### chr1 rmsk gene 160271999 160276689 . - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0234"; model_cov "2360"; model_pct "41.6"; chr1 rmsk exon 160271999 160272264 1126 - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0234"; repClass "LTR"; repEnd "4285"; repFamily "ERVL"; repLeft "4015"; repStart "-1382"; chr1 rmsk exon 160272561 160273617 2083 - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0234"; repClass "LTR"; repEnd "3876"; repFamily "ERVL"; repLeft "2661"; repStart "-1791"; chr1 rmsk exon 160274119 160274528 905 - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0234"; repClass "LTR"; repEnd "2471"; repFamily "ERVL"; repLeft "2049"; repStart "-3196"; chr1 rmsk exon 160274540 160274646 312 - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0234"; repClass "LTR"; repEnd "2297"; repFamily "ERVL"; repLeft "2206"; repStart "-3370"; chr1 rmsk exon 160276341 160276689 790 - . gene_id "ERVLE_1q23.2b"; transcript_id "ERVLE_1q23.2b"; locus "ERVLE_1q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0234"; repClass "LTR"; repEnd "2157"; repFamily "ERVL"; repLeft "1795"; repStart "-3510"; ### ERVLE_1q23.2c ### chr1 rmsk gene 160438821 160439534 . - . gene_id "ERVLE_1q23.2c"; transcript_id "ERVLE_1q23.2c"; locus "ERVLE_1q23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0235"; model_cov "749"; model_pct "13.2"; chr1 rmsk exon 160438821 160439534 2408 - . gene_id "ERVLE_1q23.2c"; transcript_id "ERVLE_1q23.2c"; locus "ERVLE_1q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0235"; repClass "LTR"; repEnd "3930"; repFamily "ERVL"; repLeft "3181"; repStart "-1737"; ### HERVK11_1q23.3a ### chr1 rmsk gene 160686556 160690784 . - . gene_id "HERVK11_1q23.3a"; transcript_id "HERVK11_1q23.3a"; locus "HERVK11_1q23.3a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0008"; model_cov "3368"; model_pct "42.3"; chr1 rmsk exon 160686556 160687625 8671 - . gene_id "HERVK11_1q23.3a"; transcript_id "HERVK11_1q23.3a"; locus "HERVK11_1q23.3a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0008"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 160687626 160690784 17042 - . gene_id "HERVK11_1q23.3a"; transcript_id "HERVK11_1q23.3a"; locus "HERVK11_1q23.3a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0008"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "4585"; repStart "0"; ### HML2_1q23.3 ### chr1 rmsk gene 160690785 160700016 . + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0012"; model_cov "7209"; model_pct "95.7"; chr1 rmsk exon 160690785 160691753 8986 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 160691754 160697338 32110 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "5178"; repFamily "ERVK"; repLeft "-2358"; repStart "-416"; chr1 rmsk exon 160697338 160698953 14352 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr1 rmsk exon 160699048 160700016 8448 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11_1q23.3b ### chr1 rmsk gene 160700017 160703548 . - . gene_id "HERVK11_1q23.3b"; transcript_id "HERVK11_1q23.3b"; locus "HERVK11_1q23.3b"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0009"; model_cov "3588"; model_pct "45.1"; chr1 rmsk exon 160700017 160703399 26029 - . gene_id "HERVK11_1q23.3b"; transcript_id "HERVK11_1q23.3b"; locus "HERVK11_1q23.3b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0009"; repClass "LTR"; repEnd "4590"; repFamily "ERVK"; repLeft "1165"; repStart "-3363"; chr1 rmsk exon 160703400 160703548 915 - . gene_id "HERVK11_1q23.3b"; transcript_id "HERVK11_1q23.3b"; locus "HERVK11_1q23.3b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0009"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "688"; repStart "-7102"; ### HERVFRD_1q23.3 ### chr1 rmsk gene 160716837 160722446 . + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0014"; model_cov "5020"; model_pct "69.7"; chr1 rmsk exon 160716837 160716979 912 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0014"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-588"; repStart "1"; chr1 rmsk exon 160717287 160717414 768 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0014"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-284"; repStart "323"; chr1 rmsk exon 160717416 160717570 894 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0014"; repClass "LTR"; repEnd "158"; repFamily "ERV1"; repLeft "-7047"; repStart "1"; chr1 rmsk exon 160717568 160718479 5213 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0014"; repClass "LTR"; repEnd "1243"; repFamily "ERV1"; repLeft "-5962"; repStart "267"; chr1 rmsk exon 160718620 160719235 4051 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0014"; repClass "LTR"; repEnd "1842"; repFamily "ERV1"; repLeft "-5363"; repStart "1230"; chr1 rmsk exon 160719237 160722446 6951 + . gene_id "HERVFRD_1q23.3"; transcript_id "HERVFRD_1q23.3"; locus "HERVFRD_1q23.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0014"; repClass "LTR"; repEnd "6064"; repFamily "ERV1"; repLeft "-1141"; repStart "2789"; ### ERVLB4_1q23.3a ### chr1 rmsk gene 160758515 160765919 . - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0081"; model_cov "5711"; model_pct "99.9"; chr1 rmsk exon 160758515 160758845 1514 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "188"; repStart "0"; chr1 rmsk exon 160759033 160759221 1436 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "192"; repFamily "ERVL"; repLeft "2"; repStart "-328"; chr1 rmsk exon 160759223 160760295 34303 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4639"; repStart "0"; chr1 rmsk exon 160760652 160764896 34303 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "4638"; repFamily "ERVL"; repLeft "367"; repStart "-1076"; chr1 rmsk exon 160765201 160765583 34303 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "1"; repStart "-5348"; chr1 rmsk exon 160765584 160765919 2548 - . gene_id "ERVLB4_1q23.3a"; transcript_id "ERVLB4_1q23.3a"; locus "ERVLB4_1q23.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0081"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "201"; repStart "0"; ### ERVLE_1q23.3a ### chr1 rmsk gene 161295147 161297592 . + . gene_id "ERVLE_1q23.3a"; transcript_id "ERVLE_1q23.3a"; locus "ERVLE_1q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0237"; model_cov "1425"; model_pct "25.1"; chr1 rmsk exon 161295147 161295420 1214 + . gene_id "ERVLE_1q23.3a"; transcript_id "ERVLE_1q23.3a"; locus "ERVLE_1q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0237"; repClass "LTR"; repEnd "4274"; repFamily "ERVL"; repLeft "-1393"; repStart "4006"; chr1 rmsk exon 161295605 161296222 3268 + . gene_id "ERVLE_1q23.3a"; transcript_id "ERVLE_1q23.3a"; locus "ERVLE_1q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0237"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "-746"; repStart "4295"; chr1 rmsk exon 161297076 161297592 3268 + . gene_id "ERVLE_1q23.3a"; transcript_id "ERVLE_1q23.3a"; locus "ERVLE_1q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0237"; repClass "LTR"; repEnd "5453"; repFamily "ERVL"; repLeft "-214"; repStart "4922"; ### HERV3_1q23.3 ### chr1 rmsk gene 161404661 161410464 . - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0004"; model_cov "4703"; model_pct "55.8"; chr1 rmsk exon 161404661 161405373 1842 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "8424"; repFamily "ERV1"; repLeft "7625"; repStart "-2"; chr1 rmsk exon 161405357 161406046 3081 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "6375"; repFamily "ERV1"; repLeft "5360"; repStart "-2051"; chr1 rmsk exon 161407130 161407668 3037 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "5683"; repFamily "ERV1"; repLeft "5148"; repStart "-2743"; chr1 rmsk exon 161407659 161407785 423 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3701"; repStart "-4602"; chr1 rmsk exon 161407785 161408176 1674 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "2077"; repStart "-5957"; chr1 rmsk exon 161408330 161408669 1600 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "1721"; repStart "-6346"; chr1 rmsk exon 161409028 161410464 3688 - . gene_id "HERV3_1q23.3"; transcript_id "HERV3_1q23.3"; locus "HERV3_1q23.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0004"; repClass "LTR"; repEnd "1481"; repFamily "ERV1"; repLeft "1"; repStart "-6945"; ### HERVL_1q23.3a ### chr1 rmsk gene 161431187 161439039 . - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0084"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 161431187 161431264 322 - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0084"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "359"; repStart "0"; chr1 rmsk exon 161431524 161431930 2754 - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0084"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "-33"; chr1 rmsk exon 161431931 161433899 42903 - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0084"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3688"; repStart "0"; chr1 rmsk exon 161434927 161438569 42903 - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0084"; repClass "LTR"; repEnd "3687"; repFamily "ERVL"; repLeft "1"; repStart "-1967"; chr1 rmsk exon 161438570 161439039 2210 - . gene_id "HERVL_1q23.3a"; transcript_id "HERVL_1q23.3a"; locus "HERVL_1q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0084"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP3_1q23.3 ### chr1 rmsk gene 161483098 161488577 . - . gene_id "HUERSP3_1q23.3"; transcript_id "HUERSP3_1q23.3"; locus "HUERSP3_1q23.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0009"; model_cov "5108"; model_pct "57.3"; chr1 rmsk exon 161483098 161487895 20879 - . gene_id "HUERSP3_1q23.3"; transcript_id "HUERSP3_1q23.3"; locus "HUERSP3_1q23.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0009"; repClass "LTR"; repEnd "5109"; repFamily "ERV1"; repLeft "1"; repStart "-3810"; chr1 rmsk exon 161487896 161488577 4225 - . gene_id "HUERSP3_1q23.3"; transcript_id "HUERSP3_1q23.3"; locus "HUERSP3_1q23.3"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0009"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML1_1q23.3 ### chr1 rmsk gene 161489309 161491458 . + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0002"; model_cov "2032"; model_pct "33.3"; chr1 rmsk exon 161489309 161489528 586 + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0002"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-6970"; repStart "-1091"; chr1 rmsk exon 161489603 161489689 389 + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0002"; repClass "LTR"; repEnd "-467"; repFamily "ERVK"; repLeft "-6563"; repStart "-553"; chr1 rmsk exon 161489678 161490610 4277 + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0002"; repClass "LTR"; repEnd "1162"; repFamily "ERVK"; repLeft "-4934"; repStart "174"; chr1 rmsk exon 161490610 161491341 4356 + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0002"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5210"; chr1 rmsk exon 161491404 161491458 436 + . gene_id "HML1_1q23.3"; transcript_id "HML1_1q23.3"; locus "HML1_1q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0002"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5960"; ### MER34B_1q23.3a ### chr1 rmsk gene 161514473 161517154 . + . gene_id "MER34B_1q23.3a"; transcript_id "MER34B_1q23.3a"; locus "MER34B_1q23.3a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0024"; model_cov "2562"; model_pct "47.8"; chr1 rmsk exon 161514473 161514669 717 + . gene_id "MER34B_1q23.3a"; transcript_id "MER34B_1q23.3a"; locus "MER34B_1q23.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0024"; repClass "LTR"; repEnd "-634"; repFamily "ERV1"; repLeft "-5990"; repStart "-828"; chr1 rmsk exon 161515397 161516068 1386 + . gene_id "MER34B_1q23.3a"; transcript_id "MER34B_1q23.3a"; locus "MER34B_1q23.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0024"; repClass "LTR"; repEnd "1700"; repFamily "ERV1"; repLeft "-3656"; repStart "982"; chr1 rmsk exon 161516188 161516259 343 + . gene_id "MER34B_1q23.3a"; transcript_id "MER34B_1q23.3a"; locus "MER34B_1q23.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0024"; repClass "LTR"; repEnd "2240"; repFamily "ERV1"; repLeft "-3116"; repStart "2169"; chr1 rmsk exon 161516254 161517154 939 + . gene_id "MER34B_1q23.3a"; transcript_id "MER34B_1q23.3a"; locus "MER34B_1q23.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0024"; repClass "LTR"; repEnd "5136"; repFamily "ERV1"; repLeft "-220"; repStart "3557"; ### MER34B_1q23.3b ### chr1 rmsk gene 161596130 161598811 . + . gene_id "MER34B_1q23.3b"; transcript_id "MER34B_1q23.3b"; locus "MER34B_1q23.3b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0025"; model_cov "2437"; model_pct "45.5"; chr1 rmsk exon 161596130 161596326 717 + . gene_id "MER34B_1q23.3b"; transcript_id "MER34B_1q23.3b"; locus "MER34B_1q23.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0025"; repClass "LTR"; repEnd "-634"; repFamily "ERV1"; repLeft "-5990"; repStart "-828"; chr1 rmsk exon 161597054 161597707 1417 + . gene_id "MER34B_1q23.3b"; transcript_id "MER34B_1q23.3b"; locus "MER34B_1q23.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0025"; repClass "LTR"; repEnd "1675"; repFamily "ERV1"; repLeft "-3681"; repStart "982"; chr1 rmsk exon 161597842 161597913 343 + . gene_id "MER34B_1q23.3b"; transcript_id "MER34B_1q23.3b"; locus "MER34B_1q23.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0025"; repClass "LTR"; repEnd "2240"; repFamily "ERV1"; repLeft "-3116"; repStart "2169"; chr1 rmsk exon 161597910 161598811 1337 + . gene_id "MER34B_1q23.3b"; transcript_id "MER34B_1q23.3b"; locus "MER34B_1q23.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0025"; repClass "LTR"; repEnd "5027"; repFamily "ERV1"; repLeft "-329"; repStart "3548"; ### ERV316A3_1q23.3a ### chr1 rmsk gene 162896813 162901616 . + . gene_id "ERV316A3_1q23.3a"; transcript_id "ERV316A3_1q23.3a"; locus "ERV316A3_1q23.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0115"; model_cov "3129"; model_pct "59.9"; chr1 rmsk exon 162896813 162898548 4468 + . gene_id "ERV316A3_1q23.3a"; transcript_id "ERV316A3_1q23.3a"; locus "ERV316A3_1q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0115"; repClass "LTR"; repEnd "2115"; repFamily "ERVL"; repLeft "-3111"; repStart "399"; chr1 rmsk exon 162898860 162900099 4468 + . gene_id "ERV316A3_1q23.3a"; transcript_id "ERV316A3_1q23.3a"; locus "ERV316A3_1q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0115"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "-1925"; repStart "2116"; chr1 rmsk exon 162901417 162901616 468 + . gene_id "ERV316A3_1q23.3a"; transcript_id "ERV316A3_1q23.3a"; locus "ERV316A3_1q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0115"; repClass "LTR"; repEnd "4126"; repFamily "ERVL"; repLeft "-1100"; repStart "3898"; ### HERVL_1q23.3b ### chr1 rmsk gene 163097896 163102344 . + . gene_id "HERVL_1q23.3b"; transcript_id "HERVL_1q23.3b"; locus "HERVL_1q23.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0085"; model_cov "4003"; model_pct "70.8"; chr1 rmsk exon 163097896 163101889 30786 + . gene_id "HERVL_1q23.3b"; transcript_id "HERVL_1q23.3b"; locus "HERVL_1q23.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0085"; repClass "LTR"; repEnd "5649"; repFamily "ERVL"; repLeft "-5"; repStart "1646"; chr1 rmsk exon 163101896 163102344 2609 + . gene_id "HERVL_1q23.3b"; transcript_id "HERVL_1q23.3b"; locus "HERVL_1q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0085"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLE_1q23.3b ### chr1 rmsk gene 163221169 163223907 . - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0238"; model_cov "1755"; model_pct "31.0"; chr1 rmsk exon 163221169 163221215 3164 - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0238"; repClass "LTR"; repEnd "2651"; repFamily "ERVL"; repLeft "2605"; repStart "-3016"; chr1 rmsk exon 163221528 163222121 3164 - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0238"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "1976"; repStart "-3063"; chr1 rmsk exon 163222459 163222849 3304 - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0238"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "1570"; repStart "-3687"; chr1 rmsk exon 163223145 163223661 3304 - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0238"; repClass "LTR"; repEnd "1569"; repFamily "ERVL"; repLeft "1040"; repStart "-4098"; chr1 rmsk exon 163223764 163223907 476 - . gene_id "ERVLE_1q23.3b"; transcript_id "ERVLE_1q23.3b"; locus "ERVLE_1q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0238"; repClass "LTR"; repEnd "892"; repFamily "ERVL"; repLeft "750"; repStart "-4775"; ### MER4B_1q23.3 ### chr1 rmsk gene 163275862 163277447 . + . gene_id "MER4B_1q23.3"; transcript_id "MER4B_1q23.3"; locus "MER4B_1q23.3"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0032"; model_cov "711"; model_pct "10.5"; chr1 rmsk exon 163275862 163276002 3125 + . gene_id "MER4B_1q23.3"; transcript_id "MER4B_1q23.3"; locus "MER4B_1q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0032"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "-592"; repStart "6045"; chr1 rmsk exon 163276293 163276828 3125 + . gene_id "MER4B_1q23.3"; transcript_id "MER4B_1q23.3"; locus "MER4B_1q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0032"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "6167"; chr1 rmsk exon 163276830 163277447 3906 + . gene_id "MER4B_1q23.3"; transcript_id "MER4B_1q23.3"; locus "MER4B_1q23.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0032"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_1q23.3 ### chr1 rmsk gene 163591309 163596529 . + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0062"; model_cov "4656"; model_pct "60.4"; chr1 rmsk exon 163591309 163591705 2507 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 163591708 163594259 13631 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "2828"; repFamily "ERV1"; repLeft "-4885"; repStart "1"; chr1 rmsk exon 163594258 163594642 2486 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3354"; chr1 rmsk exon 163594634 163595682 7206 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "-2702"; repStart "3994"; chr1 rmsk exon 163595698 163596131 2973 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr1 rmsk exon 163596132 163596529 2613 + . gene_id "HERVH_1q23.3"; transcript_id "HERVH_1q23.3"; locus "HERVH_1q23.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0062"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_1q23.3b ### chr1 rmsk gene 163597992 163601391 . + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0083"; model_cov "1865"; model_pct "32.6"; chr1 rmsk exon 163597992 163598071 386 + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0083"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "-336"; repStart "143"; chr1 rmsk exon 163598266 163598474 9103 + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0083"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "-5460"; repStart "25"; chr1 rmsk exon 163599190 163600719 9103 + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0083"; repClass "LTR"; repEnd "1753"; repFamily "ERVL"; repLeft "-3961"; repStart "255"; chr1 rmsk exon 163600733 163600871 793 + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0083"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5574"; chr1 rmsk exon 163600874 163601391 2043 + . gene_id "ERVLB4_1q23.3b"; transcript_id "ERVLB4_1q23.3b"; locus "ERVLB4_1q23.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0083"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERVLB4_1q23.3c ### chr1 rmsk gene 163812936 163814471 . - . gene_id "ERVLB4_1q23.3c"; transcript_id "ERVLB4_1q23.3c"; locus "ERVLB4_1q23.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0084"; model_cov "1477"; model_pct "25.8"; chr1 rmsk exon 163812936 163813326 605 - . gene_id "ERVLB4_1q23.3c"; transcript_id "ERVLB4_1q23.3c"; locus "ERVLB4_1q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0084"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "4932"; repStart "-379"; chr1 rmsk exon 163813351 163813445 321 - . gene_id "ERVLB4_1q23.3c"; transcript_id "ERVLB4_1q23.3c"; locus "ERVLB4_1q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0084"; repClass "LTR"; repEnd "3046"; repFamily "ERVL"; repLeft "2952"; repStart "-2668"; chr1 rmsk exon 163813460 163814255 1438 - . gene_id "ERVLB4_1q23.3c"; transcript_id "ERVLB4_1q23.3c"; locus "ERVLB4_1q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0084"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "2085"; repStart "-2813"; chr1 rmsk exon 163814313 163814471 259 - . gene_id "ERVLB4_1q23.3c"; transcript_id "ERVLB4_1q23.3c"; locus "ERVLB4_1q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0084"; repClass "LTR"; repEnd "1354"; repFamily "ERVL"; repLeft "1190"; repStart "-4360"; ### ERV316A3_1q23.3b ### chr1 rmsk gene 163889738 163891380 . - . gene_id "ERV316A3_1q23.3b"; transcript_id "ERV316A3_1q23.3b"; locus "ERV316A3_1q23.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0116"; model_cov "1684"; model_pct "32.2"; chr1 rmsk exon 163889738 163890421 1687 - . gene_id "ERV316A3_1q23.3b"; transcript_id "ERV316A3_1q23.3b"; locus "ERV316A3_1q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0116"; repClass "LTR"; repEnd "4372"; repFamily "ERVL"; repLeft "3717"; repStart "-854"; chr1 rmsk exon 163890505 163891380 1248 - . gene_id "ERV316A3_1q23.3b"; transcript_id "ERV316A3_1q23.3b"; locus "ERV316A3_1q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0116"; repClass "LTR"; repEnd "2502"; repFamily "ERVL"; repLeft "1473"; repStart "-2724"; ### ERVLB4_1q23.3d ### chr1 rmsk gene 164026723 164032424 . - . gene_id "ERVLB4_1q23.3d"; transcript_id "ERVLB4_1q23.3d"; locus "ERVLB4_1q23.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0085"; model_cov "4395"; model_pct "76.9"; chr1 rmsk exon 164026723 164026775 323 - . gene_id "ERVLB4_1q23.3d"; transcript_id "ERVLB4_1q23.3d"; locus "ERVLB4_1q23.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0085"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "468"; repStart "0"; chr1 rmsk exon 164026783 164027843 6262 - . gene_id "ERVLB4_1q23.3d"; transcript_id "ERVLB4_1q23.3d"; locus "ERVLB4_1q23.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0085"; repClass "LTR"; repEnd "5384"; repFamily "ERVL"; repLeft "4313"; repStart "-330"; chr1 rmsk exon 164027839 164030043 12908 - . gene_id "ERVLB4_1q23.3d"; transcript_id "ERVLB4_1q23.3d"; locus "ERVLB4_1q23.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0085"; repClass "LTR"; repEnd "3537"; repFamily "ERVL"; repLeft "1274"; repStart "-2177"; chr1 rmsk exon 164031355 164032424 5475 - . gene_id "ERVLB4_1q23.3d"; transcript_id "ERVLB4_1q23.3d"; locus "ERVLB4_1q23.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0085"; repClass "LTR"; repEnd "1268"; repFamily "ERVL"; repLeft "207"; repStart "-4446"; ### ERVLB4_1q23.3e ### chr1 rmsk gene 164079514 164082802 . + . gene_id "ERVLB4_1q23.3e"; transcript_id "ERVLB4_1q23.3e"; locus "ERVLB4_1q23.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0086"; model_cov "2749"; model_pct "48.1"; chr1 rmsk exon 164079514 164080435 11035 + . gene_id "ERVLB4_1q23.3e"; transcript_id "ERVLB4_1q23.3e"; locus "ERVLB4_1q23.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0086"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "-1816"; repStart "2963"; chr1 rmsk exon 164080742 164082452 11035 + . gene_id "ERVLB4_1q23.3e"; transcript_id "ERVLB4_1q23.3e"; locus "ERVLB4_1q23.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0086"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "3899"; chr1 rmsk exon 164082453 164082499 340 + . gene_id "ERVLB4_1q23.3e"; transcript_id "ERVLB4_1q23.3e"; locus "ERVLB4_1q23.3e"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0086"; repClass "LTR"; repEnd "81"; repFamily "ERVL"; repLeft "-383"; repStart "1"; chr1 rmsk exon 164082622 164082802 340 + . gene_id "ERVLB4_1q23.3e"; transcript_id "ERVLB4_1q23.3e"; locus "ERVLB4_1q23.3e"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0086"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-65"; repStart "82"; ### ERV316A3_1q23.3c ### chr1 rmsk gene 164147817 164151389 . + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0117"; model_cov "2892"; model_pct "55.3"; chr1 rmsk exon 164147817 164150214 5700 + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0117"; repClass "LTR"; repEnd "3831"; repFamily "ERVL"; repLeft "-1395"; repStart "1373"; chr1 rmsk exon 164150254 164150564 1092 + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0117"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "-1008"; repStart "3902"; chr1 rmsk exon 164150566 164150674 294 + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0117"; repClass "LTR"; repEnd "4590"; repFamily "ERVL"; repLeft "-636"; repStart "4472"; chr1 rmsk exon 164150794 164151002 806 + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0117"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-218"; repStart "1"; chr1 rmsk exon 164151187 164151389 806 + . gene_id "ERV316A3_1q23.3c"; transcript_id "ERV316A3_1q23.3c"; locus "ERV316A3_1q23.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0117"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "234"; ### ERVLB4_1q23.3f ### chr1 rmsk gene 164206186 164211462 . + . gene_id "ERVLB4_1q23.3f"; transcript_id "ERVLB4_1q23.3f"; locus "ERVLB4_1q23.3f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0087"; model_cov "4924"; model_pct "86.2"; chr1 rmsk exon 164206186 164206644 1644 + . gene_id "ERVLB4_1q23.3f"; transcript_id "ERVLB4_1q23.3f"; locus "ERVLB4_1q23.3f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0087"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "-12"; repStart "1"; chr1 rmsk exon 164206667 164207091 2010 + . gene_id "ERVLB4_1q23.3f"; transcript_id "ERVLB4_1q23.3f"; locus "ERVLB4_1q23.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0087"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-5261"; repStart "2"; chr1 rmsk exon 164207088 164211462 24452 + . gene_id "ERVLB4_1q23.3f"; transcript_id "ERVLB4_1q23.3f"; locus "ERVLB4_1q23.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0087"; repClass "LTR"; repEnd "5162"; repFamily "ERVL"; repLeft "-552"; repStart "689"; ### ERVLB4_1q23.3g ### chr1 rmsk gene 164272002 164273987 . - . gene_id "ERVLB4_1q23.3g"; transcript_id "ERVLB4_1q23.3g"; locus "ERVLB4_1q23.3g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0088"; model_cov "1065"; model_pct "18.6"; chr1 rmsk exon 164272002 164272860 5727 - . gene_id "ERVLB4_1q23.3g"; transcript_id "ERVLB4_1q23.3g"; locus "ERVLB4_1q23.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0088"; repClass "LTR"; repEnd "1091"; repFamily "ERVL"; repLeft "255"; repStart "-4623"; chr1 rmsk exon 164273582 164273788 5727 - . gene_id "ERVLB4_1q23.3g"; transcript_id "ERVLB4_1q23.3g"; locus "ERVLB4_1q23.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0088"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "25"; repStart "-5460"; chr1 rmsk exon 164273898 164273987 374 - . gene_id "ERVLB4_1q23.3g"; transcript_id "ERVLB4_1q23.3g"; locus "ERVLB4_1q23.3g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0088"; repClass "LTR"; repEnd "85"; repFamily "ERVL"; repLeft "1"; repStart "-329"; ### ERV316A3_1q23.3d ### chr1 rmsk gene 164370613 164371862 . - . gene_id "ERV316A3_1q23.3d"; transcript_id "ERV316A3_1q23.3d"; locus "ERV316A3_1q23.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0118"; model_cov "603"; model_pct "11.5"; chr1 rmsk exon 164370613 164371134 1447 - . gene_id "ERV316A3_1q23.3d"; transcript_id "ERV316A3_1q23.3d"; locus "ERV316A3_1q23.3d"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0118"; repClass "LTR"; repEnd "565"; repFamily "ERVL"; repLeft "1"; repStart "-3"; chr1 rmsk exon 164371248 164371862 1045 - . gene_id "ERV316A3_1q23.3d"; transcript_id "ERV316A3_1q23.3d"; locus "ERV316A3_1q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0118"; repClass "LTR"; repEnd "5079"; repFamily "ERVL"; repLeft "4476"; repStart "-147"; ### ERV316A3_1q23.3e ### chr1 rmsk gene 164465893 164469347 . - . gene_id "ERV316A3_1q23.3e"; transcript_id "ERV316A3_1q23.3e"; locus "ERV316A3_1q23.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0119"; model_cov "3249"; model_pct "62.2"; chr1 rmsk exon 164465893 164466334 1072 - . gene_id "ERV316A3_1q23.3e"; transcript_id "ERV316A3_1q23.3e"; locus "ERV316A3_1q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0119"; repClass "LTR"; repEnd "5082"; repFamily "ERVL"; repLeft "4625"; repStart "-144"; chr1 rmsk exon 164466477 164467683 2787 - . gene_id "ERV316A3_1q23.3e"; transcript_id "ERV316A3_1q23.3e"; locus "ERV316A3_1q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0119"; repClass "LTR"; repEnd "4011"; repFamily "ERVL"; repLeft "2761"; repStart "-1215"; chr1 rmsk exon 164467869 164469347 5243 - . gene_id "ERV316A3_1q23.3e"; transcript_id "ERV316A3_1q23.3e"; locus "ERV316A3_1q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0119"; repClass "LTR"; repEnd "2691"; repFamily "ERVL"; repLeft "1149"; repStart "-2535"; ### ERV316A3_1q23.3f ### chr1 rmsk gene 164469401 164470914 . - . gene_id "ERV316A3_1q23.3f"; transcript_id "ERV316A3_1q23.3f"; locus "ERV316A3_1q23.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0120"; model_cov "1141"; model_pct "21.8"; chr1 rmsk exon 164469401 164470493 5243 - . gene_id "ERV316A3_1q23.3f"; transcript_id "ERV316A3_1q23.3f"; locus "ERV316A3_1q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0120"; repClass "LTR"; repEnd "2691"; repFamily "ERVL"; repLeft "1550"; repStart "-2535"; chr1 rmsk exon 164470500 164470914 1263 - . gene_id "ERV316A3_1q23.3f"; transcript_id "ERV316A3_1q23.3f"; locus "ERV316A3_1q23.3f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0120"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### ERVLB4_1q23.3h ### chr1 rmsk gene 164508061 164510104 . - . gene_id "ERVLB4_1q23.3h"; transcript_id "ERVLB4_1q23.3h"; locus "ERVLB4_1q23.3h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0089"; model_cov "1179"; model_pct "20.6"; chr1 rmsk exon 164508061 164508600 5670 - . gene_id "ERVLB4_1q23.3h"; transcript_id "ERVLB4_1q23.3h"; locus "ERVLB4_1q23.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0089"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "647"; repStart "-4533"; chr1 rmsk exon 164508912 164509536 5670 - . gene_id "ERVLB4_1q23.3h"; transcript_id "ERVLB4_1q23.3h"; locus "ERVLB4_1q23.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0089"; repClass "LTR"; repEnd "646"; repFamily "ERVL"; repLeft "1"; repStart "-5068"; chr1 rmsk exon 164509539 164510104 3198 - . gene_id "ERVLB4_1q23.3h"; transcript_id "ERVLB4_1q23.3h"; locus "ERVLB4_1q23.3h"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0089"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERV316A3_1q23.3g ### chr1 rmsk gene 164886625 164890264 . + . gene_id "ERV316A3_1q23.3g"; transcript_id "ERV316A3_1q23.3g"; locus "ERV316A3_1q23.3g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0121"; model_cov "3302"; model_pct "63.2"; chr1 rmsk exon 164886625 164887792 5793 + . gene_id "ERV316A3_1q23.3g"; transcript_id "ERV316A3_1q23.3g"; locus "ERV316A3_1q23.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0121"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "-2579"; repStart "1539"; chr1 rmsk exon 164888096 164890264 6039 + . gene_id "ERV316A3_1q23.3g"; transcript_id "ERV316A3_1q23.3g"; locus "ERV316A3_1q23.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0121"; repClass "LTR"; repEnd "4842"; repFamily "ERVL"; repLeft "-384"; repStart "2648"; ### ERVLE_1q23.3c ### chr1 rmsk gene 165026955 165028586 . + . gene_id "ERVLE_1q23.3c"; transcript_id "ERVLE_1q23.3c"; locus "ERVLE_1q23.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0240"; model_cov "1500"; model_pct "26.5"; chr1 rmsk exon 165026955 165027328 540 + . gene_id "ERVLE_1q23.3c"; transcript_id "ERVLE_1q23.3c"; locus "ERVLE_1q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0240"; repClass "LTR"; repEnd "3864"; repFamily "ERVL"; repLeft "-1803"; repStart "3402"; chr1 rmsk exon 165027386 165027714 744 + . gene_id "ERVLE_1q23.3c"; transcript_id "ERVLE_1q23.3c"; locus "ERVLE_1q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0240"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "-1283"; repStart "4030"; chr1 rmsk exon 165027884 165028003 274 + . gene_id "ERVLE_1q23.3c"; transcript_id "ERVLE_1q23.3c"; locus "ERVLE_1q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0240"; repClass "LTR"; repEnd "4883"; repFamily "ERVL"; repLeft "-784"; repStart "4764"; chr1 rmsk exon 165028023 165028586 1183 + . gene_id "ERVLE_1q23.3c"; transcript_id "ERVLE_1q23.3c"; locus "ERVLE_1q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0240"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-446"; repStart "4656"; ### ERVLE_1q23.3d ### chr1 rmsk gene 165036150 165037695 . + . gene_id "ERVLE_1q23.3d"; transcript_id "ERVLE_1q23.3d"; locus "ERVLE_1q23.3d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0241"; model_cov "1025"; model_pct "18.1"; chr1 rmsk exon 165036150 165036695 1234 + . gene_id "ERVLE_1q23.3d"; transcript_id "ERVLE_1q23.3d"; locus "ERVLE_1q23.3d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0241"; repClass "LTR"; repEnd "623"; repFamily "ERVL"; repLeft "-5"; repStart "36"; chr1 rmsk exon 165036702 165037695 3286 + . gene_id "ERVLE_1q23.3d"; transcript_id "ERVLE_1q23.3d"; locus "ERVLE_1q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0241"; repClass "LTR"; repEnd "1030"; repFamily "ERVL"; repLeft "-4637"; repStart "5"; ### ERV316A3_1q24.1 ### chr1 rmsk gene 165815775 165818468 . + . gene_id "ERV316A3_1q24.1"; transcript_id "ERV316A3_1q24.1"; locus "ERV316A3_1q24.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0123"; model_cov "1382"; model_pct "26.4"; chr1 rmsk exon 165815775 165816219 1618 + . gene_id "ERV316A3_1q24.1"; transcript_id "ERV316A3_1q24.1"; locus "ERV316A3_1q24.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0123"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr1 rmsk exon 165816220 165816588 3334 + . gene_id "ERV316A3_1q24.1"; transcript_id "ERV316A3_1q24.1"; locus "ERV316A3_1q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0123"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "-4912"; repStart "5"; chr1 rmsk exon 165816886 165817340 3334 + . gene_id "ERV316A3_1q24.1"; transcript_id "ERV316A3_1q24.1"; locus "ERV316A3_1q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0123"; repClass "LTR"; repEnd "843"; repFamily "ERVL"; repLeft "-4383"; repStart "315"; chr1 rmsk exon 165817965 165818468 3334 + . gene_id "ERV316A3_1q24.1"; transcript_id "ERV316A3_1q24.1"; locus "ERV316A3_1q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0123"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-3837"; repStart "844"; ### MER4_1q24.1a ### chr1 rmsk gene 166526766 166533515 . + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0047"; model_cov "5668"; model_pct "85.9"; chr1 rmsk exon 166526766 166527210 3004 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0047"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 166527211 166527863 2863 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "-5774"; repStart "1"; chr1 rmsk exon 166527866 166527925 257 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "-5851"; repStart "695"; chr1 rmsk exon 166527996 166529443 7749 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "993"; chr1 rmsk exon 166529670 166530195 1891 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3278"; repStart "2737"; chr1 rmsk exon 166530172 166530293 14833 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "-2593"; repStart "3884"; chr1 rmsk exon 166530588 166533053 14833 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0047"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "4006"; chr1 rmsk exon 166533065 166533515 3137 + . gene_id "MER4_1q24.1a"; transcript_id "MER4_1q24.1a"; locus "MER4_1q24.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0047"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_1q24.1b ### chr1 rmsk gene 166534022 166541928 . - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; category "tandem*"; intModel "MER4-int"; locid "MER4-int_0048"; model_cov "960"; model_pct "14.5"; chr1 rmsk exon 166534022 166534521 3266 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "2853"; repFamily "ERV1"; repLeft "2366"; repStart "-3745"; chr1 rmsk exon 166534526 166534961 2585 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "-6124"; chr1 rmsk exon 166534989 166535425 2939 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0048"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-13"; chr1 rmsk exon 166535427 166538087 15647 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "3840"; repStart "0"; chr1 rmsk exon 166538087 166538143 373 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3621"; repStart "-2917"; chr1 rmsk exon 166538150 166538864 2743 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "3469"; repFamily "ERV1"; repLeft "2738"; repStart "-3129"; chr1 rmsk exon 166539119 166540737 9508 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "262"; repStart "-4113"; chr1 rmsk exon 166540785 166541475 9508 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0048"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "1"; repStart "-5758"; chr1 rmsk exon 166541479 166541928 3251 - . gene_id "MER4_1q24.1b"; transcript_id "MER4_1q24.1b"; locus "MER4_1q24.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0048"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML2_1q24.1 ### chr1 rmsk gene 166605366 166611021 . - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0013"; model_cov "3660"; model_pct "48.6"; chr1 rmsk exon 166605366 166606355 7845 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 166606445 166609934 20727 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "3882"; repStart "-89"; chr1 rmsk exon 166609929 166610025 470 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "7"; repStart "-7434"; chr1 rmsk exon 166610032 166611021 7616 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_1q24.1 ### chr1 rmsk gene 166658793 166662164 . + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0090"; model_cov "1932"; model_pct "33.8"; chr1 rmsk exon 166658793 166659292 2509 + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0090"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-47"; repStart "1"; chr1 rmsk exon 166659404 166659591 1638 + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0090"; repClass "LTR"; repEnd "196"; repFamily "ERVL"; repLeft "-5518"; repStart "17"; chr1 rmsk exon 166659894 166660036 1638 + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0090"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-5384"; repStart "197"; chr1 rmsk exon 166660012 166661584 9116 + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0090"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4094"; chr1 rmsk exon 166661585 166662164 2728 + . gene_id "ERVLB4_1q24.1"; transcript_id "ERVLB4_1q24.1"; locus "ERVLB4_1q24.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0090"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### ERVL_1q24.1 ### chr1 rmsk gene 166710004 166711617 . - . gene_id "ERVL_1q24.1"; transcript_id "ERVL_1q24.1"; locus "ERVL_1q24.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0019"; model_cov "868"; model_pct "15.1"; chr1 rmsk exon 166710004 166710569 2466 - . gene_id "ERVL_1q24.1"; transcript_id "ERVL_1q24.1"; locus "ERVL_1q24.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0019"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 166710570 166711151 3493 - . gene_id "ERVL_1q24.1"; transcript_id "ERVL_1q24.1"; locus "ERVL_1q24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0019"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5166"; repStart "0"; chr1 rmsk exon 166711321 166711617 1487 - . gene_id "ERVL_1q24.1"; transcript_id "ERVL_1q24.1"; locus "ERVL_1q24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0019"; repClass "LTR"; repEnd "5155"; repFamily "ERVL"; repLeft "4878"; repStart "-602"; ### ERVLE_1q24.1 ### chr1 rmsk gene 166815061 166815948 . + . gene_id "ERVLE_1q24.1"; transcript_id "ERVLE_1q24.1"; locus "ERVLE_1q24.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0243"; model_cov "842"; model_pct "14.9"; chr1 rmsk exon 166815061 166815538 905 + . gene_id "ERVLE_1q24.1"; transcript_id "ERVLE_1q24.1"; locus "ERVLE_1q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0243"; repClass "LTR"; repEnd "3848"; repFamily "ERVL"; repLeft "-1819"; repStart "3413"; chr1 rmsk exon 166815566 166815948 1291 + . gene_id "ERVLE_1q24.1"; transcript_id "ERVLE_1q24.1"; locus "ERVLE_1q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0243"; repClass "LTR"; repEnd "4412"; repFamily "ERVL"; repLeft "-1255"; repStart "4005"; ### HML3_1q24.2 ### chr1 rmsk gene 167317366 167323078 . - . gene_id "HML3_1q24.2"; transcript_id "HML3_1q24.2"; locus "HML3_1q24.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0016"; model_cov "4709"; model_pct "78.2"; chr1 rmsk exon 167317366 167317845 3363 - . gene_id "HML3_1q24.2"; transcript_id "HML3_1q24.2"; locus "HML3_1q24.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0016"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 167317846 167322601 29678 - . gene_id "HML3_1q24.2"; transcript_id "HML3_1q24.2"; locus "HML3_1q24.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0016"; repClass "LTR"; repEnd "4771"; repFamily "ERVK"; repLeft "62"; repStart "-1250"; chr1 rmsk exon 167322610 167323078 3150 - . gene_id "HML3_1q24.2"; transcript_id "HML3_1q24.2"; locus "HML3_1q24.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0016"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_1q24.2 ### chr1 rmsk gene 167574342 167575357 . + . gene_id "LTR25_1q24.2"; transcript_id "LTR25_1q24.2"; locus "LTR25_1q24.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0012"; model_cov "1464"; model_pct "20.4"; chr1 rmsk exon 167574342 167575357 3179 + . gene_id "LTR25_1q24.2"; transcript_id "LTR25_1q24.2"; locus "LTR25_1q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0012"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "5724"; ### ERV316A3_1q24.2a ### chr1 rmsk gene 167581655 167584948 . - . gene_id "ERV316A3_1q24.2a"; transcript_id "ERV316A3_1q24.2a"; locus "ERV316A3_1q24.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0125"; model_cov "2090"; model_pct "40.0"; chr1 rmsk exon 167581655 167583219 4047 - . gene_id "ERV316A3_1q24.2a"; transcript_id "ERV316A3_1q24.2a"; locus "ERV316A3_1q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0125"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "552"; repStart "-3145"; chr1 rmsk exon 167583804 167584359 4047 - . gene_id "ERV316A3_1q24.2a"; transcript_id "ERV316A3_1q24.2a"; locus "ERV316A3_1q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0125"; repClass "LTR"; repEnd "802"; repFamily "ERVL"; repLeft "241"; repStart "-4424"; chr1 rmsk exon 167584366 167584424 248 - . gene_id "ERV316A3_1q24.2a"; transcript_id "ERV316A3_1q24.2a"; locus "ERV316A3_1q24.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0125"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "392"; repStart "0"; chr1 rmsk exon 167584597 167584948 832 - . gene_id "ERV316A3_1q24.2a"; transcript_id "ERV316A3_1q24.2a"; locus "ERV316A3_1q24.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0125"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-1"; repStart "-52"; ### ERVLE_1q24.2 ### chr1 rmsk gene 167732967 167735856 . - . gene_id "ERVLE_1q24.2"; transcript_id "ERVLE_1q24.2"; locus "ERVLE_1q24.2"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0244"; model_cov "1710"; model_pct "30.2"; chr1 rmsk exon 167732967 167733462 3067 - . gene_id "ERVLE_1q24.2"; transcript_id "ERVLE_1q24.2"; locus "ERVLE_1q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0244"; repClass "LTR"; repEnd "1753"; repFamily "ERVL"; repLeft "1257"; repStart "-3914"; chr1 rmsk exon 167733939 167733974 4479 - . gene_id "ERVLE_1q24.2"; transcript_id "ERVLE_1q24.2"; locus "ERVLE_1q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0244"; repClass "LTR"; repEnd "1220"; repFamily "ERVL"; repLeft "1193"; repStart "-4447"; chr1 rmsk exon 167734275 167735453 4479 - . gene_id "ERVLE_1q24.2"; transcript_id "ERVLE_1q24.2"; locus "ERVLE_1q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0244"; repClass "LTR"; repEnd "1192"; repFamily "ERVL"; repLeft "5"; repStart "-4475"; chr1 rmsk exon 167735454 167735856 1517 - . gene_id "ERVLE_1q24.2"; transcript_id "ERVLE_1q24.2"; locus "ERVLE_1q24.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_0244"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "20"; repStart "-6"; ### HARLEQUIN_1q24.2 ### chr1 rmsk gene 167863091 167869903 . + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0017"; model_cov "5929"; model_pct "86.0"; chr1 rmsk exon 167863091 167863572 2526 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 167863573 167864915 4884 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "1349"; repFamily "ERV1"; repLeft "-5547"; repStart "1"; chr1 rmsk exon 167864900 167865654 5443 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1807"; chr1 rmsk exon 167865643 167866544 7370 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "4260"; repFamily "ERV1"; repLeft "-2636"; repStart "3340"; chr1 rmsk exon 167866539 167866792 1752 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "1817"; repFamily "ERV1"; repLeft "-5079"; repStart "1570"; chr1 rmsk exon 167866781 167869426 18631 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "4249"; chr1 rmsk exon 167869427 167869903 2736 + . gene_id "HARLEQUIN_1q24.2"; transcript_id "HARLEQUIN_1q24.2"; locus "HARLEQUIN_1q24.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0017"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_1q24.2 ### chr1 rmsk gene 168264241 168270932 . - . gene_id "HERVL18_1q24.2"; transcript_id "HERVL18_1q24.2"; locus "HERVL18_1q24.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0009"; model_cov "6045"; model_pct "100.0"; chr1 rmsk exon 168264241 168264565 1316 - . gene_id "HERVL18_1q24.2"; transcript_id "HERVL18_1q24.2"; locus "HERVL18_1q24.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0009"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 168264567 168270596 41806 - . gene_id "HERVL18_1q24.2"; transcript_id "HERVL18_1q24.2"; locus "HERVL18_1q24.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0009"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr1 rmsk exon 168270604 168270932 1445 - . gene_id "HERVL18_1q24.2"; transcript_id "HERVL18_1q24.2"; locus "HERVL18_1q24.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0009"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER34B_1q24.2 ### chr1 rmsk gene 168334088 168336708 . + . gene_id "MER34B_1q24.2"; transcript_id "MER34B_1q24.2"; locus "MER34B_1q24.2"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0026"; model_cov "2255"; model_pct "42.1"; chr1 rmsk exon 168334088 168334405 975 + . gene_id "MER34B_1q24.2"; transcript_id "MER34B_1q24.2"; locus "MER34B_1q24.2"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0026"; repClass "LTR"; repEnd "430"; repFamily "ERV1"; repLeft "-155"; repStart "60"; chr1 rmsk exon 168334406 168336059 3186 + . gene_id "MER34B_1q24.2"; transcript_id "MER34B_1q24.2"; locus "MER34B_1q24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0026"; repClass "LTR"; repEnd "3010"; repFamily "ERV1"; repLeft "-2346"; repStart "891"; chr1 rmsk exon 168336577 168336708 771 + . gene_id "MER34B_1q24.2"; transcript_id "MER34B_1q24.2"; locus "MER34B_1q24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0026"; repClass "LTR"; repEnd "3203"; repFamily "ERV1"; repLeft "-2153"; repStart "3067"; ### ERV316A3_1q24.2b ### chr1 rmsk gene 168434251 168436218 . + . gene_id "ERV316A3_1q24.2b"; transcript_id "ERV316A3_1q24.2b"; locus "ERV316A3_1q24.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0126"; model_cov "1437"; model_pct "27.5"; chr1 rmsk exon 168434251 168434385 488 + . gene_id "ERV316A3_1q24.2b"; transcript_id "ERV316A3_1q24.2b"; locus "ERV316A3_1q24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0126"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-292"; repStart "5"; chr1 rmsk exon 168434418 168435098 2160 + . gene_id "ERV316A3_1q24.2b"; transcript_id "ERV316A3_1q24.2b"; locus "ERV316A3_1q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0126"; repClass "LTR"; repEnd "3942"; repFamily "ERVL"; repLeft "-1284"; repStart "3247"; chr1 rmsk exon 168435116 168435836 1691 + . gene_id "ERV316A3_1q24.2b"; transcript_id "ERV316A3_1q24.2b"; locus "ERV316A3_1q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0126"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4434"; chr1 rmsk exon 168435886 168436218 769 + . gene_id "ERV316A3_1q24.2b"; transcript_id "ERV316A3_1q24.2b"; locus "ERV316A3_1q24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0126"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-7"; repStart "3"; ### ERVLB4_1q24.2 ### chr1 rmsk gene 168929961 168932471 . + . gene_id "ERVLB4_1q24.2"; transcript_id "ERVLB4_1q24.2"; locus "ERVLB4_1q24.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0094"; model_cov "769"; model_pct "13.5"; chr1 rmsk exon 168929961 168930073 317 + . gene_id "ERVLB4_1q24.2"; transcript_id "ERVLB4_1q24.2"; locus "ERVLB4_1q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0094"; repClass "LTR"; repEnd "1773"; repFamily "ERVL"; repLeft "-3941"; repStart "1661"; chr1 rmsk exon 168930139 168930522 554 + . gene_id "ERVLB4_1q24.2"; transcript_id "ERVLB4_1q24.2"; locus "ERVLB4_1q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0094"; repClass "LTR"; repEnd "3011"; repFamily "ERVL"; repLeft "-2703"; repStart "2622"; chr1 rmsk exon 168932204 168932471 422 + . gene_id "ERVLB4_1q24.2"; transcript_id "ERVLB4_1q24.2"; locus "ERVLB4_1q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0094"; repClass "LTR"; repEnd "3598"; repFamily "ERVL"; repLeft "-2116"; repStart "3330"; ### PABLA_1q24.2 ### chr1 rmsk gene 169390639 169392119 . - . gene_id "PABLA_1q24.2"; transcript_id "PABLA_1q24.2"; locus "PABLA_1q24.2"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0007"; model_cov "840"; model_pct "16.7"; chr1 rmsk exon 169390639 169391473 5907 - . gene_id "PABLA_1q24.2"; transcript_id "PABLA_1q24.2"; locus "PABLA_1q24.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0007"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "1"; repStart "-4174"; chr1 rmsk exon 169391474 169392119 5087 - . gene_id "PABLA_1q24.2"; transcript_id "PABLA_1q24.2"; locus "PABLA_1q24.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0007"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP1_1q24.2 ### chr1 rmsk gene 169437009 169440502 . - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0012"; model_cov "1984"; model_pct "31.7"; chr1 rmsk exon 169437009 169437565 3854 - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0012"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "1"; repStart "-107"; chr1 rmsk exon 169437566 169437898 1757 - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0012"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5910"; repStart "0"; chr1 rmsk exon 169437883 169439418 10784 - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0012"; repClass "LTR"; repEnd "1633"; repFamily "ERV1"; repLeft "164"; repStart "-4630"; chr1 rmsk exon 169440173 169440333 10784 - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0012"; repClass "LTR"; repEnd "163"; repFamily "ERV1"; repLeft "1"; repStart "-6100"; chr1 rmsk exon 169440334 169440502 1132 - . gene_id "HUERSP1_1q24.2"; transcript_id "HUERSP1_1q24.2"; locus "HUERSP1_1q24.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0012"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "513"; repStart "0"; ### HERVH_1q24.2 ### chr1 rmsk gene 169683070 169688724 . + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0063"; model_cov "4560"; model_pct "59.1"; chr1 rmsk exon 169683070 169683479 2176 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 169683480 169686281 12960 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "2983"; repFamily "ERV1"; repLeft "-4730"; repStart "1"; chr1 rmsk exon 169686280 169686382 530 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "3243"; repFamily "ERV1"; repLeft "-4470"; repStart "3141"; chr1 rmsk exon 169686379 169686874 3333 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4654"; chr1 rmsk exon 169686866 169687291 2127 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr1 rmsk exon 169687285 169687626 3534 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "7500"; repFamily "ERV1"; repLeft "-213"; repStart "7157"; chr1 rmsk exon 169688096 169688314 3534 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7501"; chr1 rmsk exon 169688315 169688724 2181 + . gene_id "HERVH_1q24.2"; transcript_id "HERVH_1q24.2"; locus "HERVH_1q24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0063"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3B_1q24.2 ### chr1 rmsk gene 169815820 169819626 . - . gene_id "HUERSP3B_1q24.2"; transcript_id "HUERSP3B_1q24.2"; locus "HUERSP3B_1q24.2"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0009"; model_cov "3128"; model_pct "42.2"; chr1 rmsk exon 169815820 169818679 9025 - . gene_id "HUERSP3B_1q24.2"; transcript_id "HUERSP3B_1q24.2"; locus "HUERSP3B_1q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0009"; repClass "LTR"; repEnd "6563"; repFamily "ERV1"; repLeft "4047"; repStart "-855"; chr1 rmsk exon 169818984 169819626 9025 - . gene_id "HUERSP3B_1q24.2"; transcript_id "HUERSP3B_1q24.2"; locus "HUERSP3B_1q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0009"; repClass "LTR"; repEnd "4046"; repFamily "ERV1"; repLeft "3434"; repStart "-3372"; ### MER41_1q24.2 ### chr1 rmsk gene 169820022 169820957 . - . gene_id "MER41_1q24.2"; transcript_id "MER41_1q24.2"; locus "MER41_1q24.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0028"; model_cov "737"; model_pct "12.4"; chr1 rmsk exon 169820022 169820118 1260 - . gene_id "MER41_1q24.2"; transcript_id "MER41_1q24.2"; locus "MER41_1q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0028"; repClass "LTR"; repEnd "794"; repFamily "ERV1"; repLeft "745"; repStart "-5152"; chr1 rmsk exon 169820120 169820806 4142 - . gene_id "MER41_1q24.2"; transcript_id "MER41_1q24.2"; locus "MER41_1q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0028"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "2"; repStart "-5256"; chr1 rmsk exon 169820808 169820957 1019 - . gene_id "MER41_1q24.2"; transcript_id "MER41_1q24.2"; locus "MER41_1q24.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0028"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### MER4B_1q24.2 ### chr1 rmsk gene 170043147 170045765 . + . gene_id "MER4B_1q24.2"; transcript_id "MER4B_1q24.2"; locus "MER4B_1q24.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0036"; model_cov "2321"; model_pct "34.3"; chr1 rmsk exon 170043147 170044539 5877 + . gene_id "MER4B_1q24.2"; transcript_id "MER4B_1q24.2"; locus "MER4B_1q24.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0036"; repClass "LTR"; repEnd "4968"; repFamily "ERV1"; repLeft "-1790"; repStart "3553"; chr1 rmsk exon 170044618 170045765 4816 + . gene_id "MER4B_1q24.2"; transcript_id "MER4B_1q24.2"; locus "MER4B_1q24.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0036"; repClass "LTR"; repEnd "6169"; repFamily "ERV1"; repLeft "-589"; repStart "5263"; ### ERVLB4_1q24.3 ### chr1 rmsk gene 170936135 170942366 . - . gene_id "ERVLB4_1q24.3"; transcript_id "ERVLB4_1q24.3"; locus "ERVLB4_1q24.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0096"; model_cov "4967"; model_pct "86.9"; chr1 rmsk exon 170936135 170936609 1914 - . gene_id "ERVLB4_1q24.3"; transcript_id "ERVLB4_1q24.3"; locus "ERVLB4_1q24.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0096"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "6"; repStart "-2"; chr1 rmsk exon 170936619 170936728 29693 - . gene_id "ERVLB4_1q24.3"; transcript_id "ERVLB4_1q24.3"; locus "ERVLB4_1q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0096"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5614"; repStart "0"; chr1 rmsk exon 170937207 170937515 29693 - . gene_id "ERVLB4_1q24.3"; transcript_id "ERVLB4_1q24.3"; locus "ERVLB4_1q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0096"; repClass "LTR"; repEnd "5613"; repFamily "ERVL"; repLeft "5303"; repStart "-101"; chr1 rmsk exon 170937823 170942366 29693 - . gene_id "ERVLB4_1q24.3"; transcript_id "ERVLB4_1q24.3"; locus "ERVLB4_1q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0096"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "745"; repStart "-412"; ### ERVLE_1q24.3 ### chr1 rmsk gene 171125290 171125767 . - . gene_id "ERVLE_1q24.3"; transcript_id "ERVLE_1q24.3"; locus "ERVLE_1q24.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0245"; model_cov "574"; model_pct "10.1"; chr1 rmsk exon 171125290 171125767 615 - . gene_id "ERVLE_1q24.3"; transcript_id "ERVLE_1q24.3"; locus "ERVLE_1q24.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0245"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "275"; repStart "-4818"; ### MER61_1q24.3a ### chr1 rmsk gene 171213837 171218786 . - . gene_id "MER61_1q24.3a"; transcript_id "MER61_1q24.3a"; locus "MER61_1q24.3a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0026"; model_cov "5522"; model_pct "100.0"; chr1 rmsk exon 171213837 171214165 1963 - . gene_id "MER61_1q24.3a"; transcript_id "MER61_1q24.3a"; locus "MER61_1q24.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0026"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 171214166 171217821 20828 - . gene_id "MER61_1q24.3a"; transcript_id "MER61_1q24.3a"; locus "MER61_1q24.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0026"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-668"; repStart "-1139"; chr1 rmsk exon 171217815 171218457 2151 - . gene_id "MER61_1q24.3a"; transcript_id "MER61_1q24.3a"; locus "MER61_1q24.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0026"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "1"; repStart "-4440"; chr1 rmsk exon 171218458 171218786 1995 - . gene_id "MER61_1q24.3a"; transcript_id "MER61_1q24.3a"; locus "MER61_1q24.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0026"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA4_1q24.3 ### chr1 rmsk gene 171290616 171298477 . - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0018"; model_cov "6506"; model_pct "78.7"; chr1 rmsk exon 171290616 171290671 226 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "541"; repStart "0"; chr1 rmsk exon 171290672 171291159 45696 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "6510"; repFamily "ERV1"; repLeft "6035"; repStart "-1760"; chr1 rmsk exon 171291454 171292096 45696 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "6034"; repFamily "ERV1"; repLeft "5392"; repStart "-2236"; chr1 rmsk exon 171292405 171295571 45696 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "5391"; repFamily "ERV1"; repLeft "2212"; repStart "-2879"; chr1 rmsk exon 171295864 171297945 45696 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "2211"; repFamily "ERV1"; repLeft "1"; repStart "-6059"; chr1 rmsk exon 171297946 171298477 3940 - . gene_id "PRIMA4_1q24.3"; transcript_id "PRIMA4_1q24.3"; locus "PRIMA4_1q24.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0018"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_1q24.3 ### chr1 rmsk gene 171304883 171312917 . + . gene_id "HERV9_1q24.3"; transcript_id "HERV9_1q24.3"; locus "HERV9_1q24.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0014"; model_cov "7110"; model_pct "84.3"; chr1 rmsk exon 171304883 171305418 3742 + . gene_id "HERV9_1q24.3"; transcript_id "HERV9_1q24.3"; locus "HERV9_1q24.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0014"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 171305441 171310983 37020 + . gene_id "HERV9_1q24.3"; transcript_id "HERV9_1q24.3"; locus "HERV9_1q24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0014"; repClass "LTR"; repEnd "5711"; repFamily "ERV1"; repLeft "-2725"; repStart "31"; chr1 rmsk exon 171310984 171312402 11056 + . gene_id "HERV9_1q24.3"; transcript_id "HERV9_1q24.3"; locus "HERV9_1q24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0014"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7006"; chr1 rmsk exon 171312403 171312917 3957 + . gene_id "HERV9_1q24.3"; transcript_id "HERV9_1q24.3"; locus "HERV9_1q24.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0014"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_1q24.3 ### chr1 rmsk gene 171600445 171606825 . + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0018"; model_cov "5446"; model_pct "79.0"; chr1 rmsk exon 171600445 171600923 3710 + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0018"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 171600924 171601846 6014 + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0018"; repClass "LTR"; repEnd "901"; repFamily "ERV1"; repLeft "-5995"; repStart "1"; chr1 rmsk exon 171601832 171602819 6360 + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0018"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr1 rmsk exon 171602819 171606351 22375 + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0018"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "3352"; chr1 rmsk exon 171606352 171606825 3456 + . gene_id "HARLEQUIN_1q24.3"; transcript_id "HARLEQUIN_1q24.3"; locus "HARLEQUIN_1q24.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0018"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_1q24.3a ### chr1 rmsk gene 171608720 171614720 . - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0128"; model_cov "2942"; model_pct "56.3"; chr1 rmsk exon 171608720 171608935 910 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "2"; repStart "-216"; chr1 rmsk exon 171609013 171609576 842 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "5122"; repFamily "ERVL"; repLeft "4503"; repStart "-104"; chr1 rmsk exon 171610263 171610396 858 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "4449"; repFamily "ERVL"; repLeft "4321"; repStart "-777"; chr1 rmsk exon 171610763 171610889 858 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "4193"; repStart "-906"; chr1 rmsk exon 171610939 171611426 1330 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "3703"; repFamily "ERVL"; repLeft "3193"; repStart "-1523"; chr1 rmsk exon 171611510 171611875 1646 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "2689"; repStart "-2161"; chr1 rmsk exon 171611903 171612062 1585 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "2728"; repFamily "ERVL"; repLeft "2565"; repStart "-2498"; chr1 rmsk exon 171612379 171612545 1585 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "2564"; repFamily "ERVL"; repLeft "2400"; repStart "-2662"; chr1 rmsk exon 171612861 171613259 1585 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "2399"; repFamily "ERVL"; repLeft "1984"; repStart "-2827"; chr1 rmsk exon 171613301 171613546 510 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "976"; repFamily "ERVL"; repLeft "686"; repStart "-4250"; chr1 rmsk exon 171613830 171613976 510 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "685"; repFamily "ERVL"; repLeft "535"; repStart "-4541"; chr1 rmsk exon 171614281 171614720 1775 - . gene_id "ERV316A3_1q24.3a"; transcript_id "ERV316A3_1q24.3a"; locus "ERV316A3_1q24.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0128"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "1"; repStart "-8"; ### MER61_1q24.3b ### chr1 rmsk gene 172616179 172622331 . + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0027"; model_cov "5211"; model_pct "99.9"; chr1 rmsk exon 172616179 172616509 1953 + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0027"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 172616513 172619094 20291 + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0027"; repClass "LTR"; repEnd "3133"; repFamily "ERV1"; repLeft "-2084"; repStart "4"; chr1 rmsk exon 172619168 172620318 20291 + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0027"; repClass "LTR"; repEnd "4530"; repFamily "ERV1"; repLeft "-687"; repStart "3134"; chr1 rmsk exon 172621422 172622001 20291 + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0027"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4531"; chr1 rmsk exon 172622002 172622331 2097 + . gene_id "MER61_1q24.3b"; transcript_id "MER61_1q24.3b"; locus "MER61_1q24.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0027"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_1q24.3 ### chr1 rmsk gene 172688069 172694055 . - . gene_id "HERVL_1q24.3"; transcript_id "HERVL_1q24.3"; locus "HERVL_1q24.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0086"; model_cov "5529"; model_pct "97.8"; chr1 rmsk exon 172688069 172688118 2883 - . gene_id "HERVL_1q24.3"; transcript_id "HERVL_1q24.3"; locus "HERVL_1q24.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0086"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "403"; repStart "-3"; chr1 rmsk exon 172688150 172688548 2883 - . gene_id "HERVL_1q24.3"; transcript_id "HERVL_1q24.3"; locus "HERVL_1q24.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0086"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "1"; repStart "-42"; chr1 rmsk exon 172688549 172694055 41904 - . gene_id "HERVL_1q24.3"; transcript_id "HERVL_1q24.3"; locus "HERVL_1q24.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0086"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "125"; repStart "0"; ### ERV316A3_1q24.3b ### chr1 rmsk gene 172696420 172696961 . - . gene_id "ERV316A3_1q24.3b"; transcript_id "ERV316A3_1q24.3b"; locus "ERV316A3_1q24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0129"; model_cov "537"; model_pct "10.3"; chr1 rmsk exon 172696420 172696961 1583 - . gene_id "ERV316A3_1q24.3b"; transcript_id "ERV316A3_1q24.3b"; locus "ERV316A3_1q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0129"; repClass "LTR"; repEnd "2713"; repFamily "ERVL"; repLeft "2176"; repStart "-2513"; ### MER101_1q24.3a ### chr1 rmsk gene 172795691 172799028 . - . gene_id "MER101_1q24.3a"; transcript_id "MER101_1q24.3a"; locus "MER101_1q24.3a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0028"; model_cov "3306"; model_pct "49.8"; chr1 rmsk exon 172795691 172796188 2032 - . gene_id "MER101_1q24.3a"; transcript_id "MER101_1q24.3a"; locus "MER101_1q24.3a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0028"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 172796189 172798275 3373 - . gene_id "MER101_1q24.3a"; transcript_id "MER101_1q24.3a"; locus "MER101_1q24.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0028"; repClass "LTR"; repEnd "5623"; repFamily "ERV1"; repLeft "3119"; repStart "-1016"; chr1 rmsk exon 172798262 172799028 3086 - . gene_id "MER101_1q24.3a"; transcript_id "MER101_1q24.3a"; locus "MER101_1q24.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0028"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "2983"; repStart "-2854"; ### MER101_1q24.3b ### chr1 rmsk gene 172805530 172806444 . - . gene_id "MER101_1q24.3b"; transcript_id "MER101_1q24.3b"; locus "MER101_1q24.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0030"; model_cov "1438"; model_pct "21.7"; chr1 rmsk exon 172805530 172806444 2144 - . gene_id "MER101_1q24.3b"; transcript_id "MER101_1q24.3b"; locus "MER101_1q24.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0030"; repClass "LTR"; repEnd "2820"; repFamily "ERV1"; repLeft "1382"; repStart "-3819"; ### LTR19_1q24.3 ### chr1 rmsk gene 172847553 172851416 . - . gene_id "LTR19_1q24.3"; transcript_id "LTR19_1q24.3"; locus "LTR19_1q24.3"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0005"; model_cov "4127"; model_pct "73.9"; chr1 rmsk exon 172847553 172849787 11801 - . gene_id "LTR19_1q24.3"; transcript_id "LTR19_1q24.3"; locus "LTR19_1q24.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0005"; repClass "LTR"; repEnd "4465"; repFamily "ERV1"; repLeft "1738"; repStart "-1121"; chr1 rmsk exon 172850009 172850499 3729 - . gene_id "LTR19_1q24.3"; transcript_id "LTR19_1q24.3"; locus "LTR19_1q24.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0005"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "1723"; repStart "-3366"; chr1 rmsk exon 172850481 172851416 6055 - . gene_id "LTR19_1q24.3"; transcript_id "LTR19_1q24.3"; locus "LTR19_1q24.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0005"; repClass "LTR"; repEnd "1475"; repFamily "ERV1"; repLeft "572"; repStart "-4111"; ### ERVLB4_1q25.1a ### chr1 rmsk gene 173021845 173024861 . - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0097"; model_cov "2106"; model_pct "36.9"; chr1 rmsk exon 173021845 173021888 2665 - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0097"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "512"; repStart "0"; chr1 rmsk exon 173021955 173022433 2665 - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0097"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "1"; repStart "-43"; chr1 rmsk exon 173022434 173023131 11206 - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0097"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5046"; repStart "0"; chr1 rmsk exon 173023449 173024764 11206 - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0097"; repClass "LTR"; repEnd "5045"; repFamily "ERVL"; repLeft "3607"; repStart "-669"; chr1 rmsk exon 173024766 173024861 578 - . gene_id "ERVLB4_1q25.1a"; transcript_id "ERVLB4_1q25.1a"; locus "ERVLB4_1q25.1a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0097"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "1"; repStart "-420"; ### ERVLB4_1q25.1b ### chr1 rmsk gene 173333146 173340404 . + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0098"; model_cov "5706"; model_pct "99.9"; chr1 rmsk exon 173333146 173333423 2416 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "287"; repFamily "ERVL"; repLeft "-269"; repStart "6"; chr1 rmsk exon 173333807 173334091 2416 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-4"; repStart "288"; chr1 rmsk exon 173334103 173339109 29262 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "-486"; repStart "6"; chr1 rmsk exon 173339403 173339877 29262 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5229"; chr1 rmsk exon 173339878 173340323 2252 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr1 rmsk exon 173340369 173340404 2252 + . gene_id "ERVLB4_1q25.1b"; transcript_id "ERVLB4_1q25.1b"; locus "ERVLB4_1q25.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0098"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-4"; repStart "512"; ### HERV9_1q25.1 ### chr1 rmsk gene 173367863 173382451 . + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; category "mergeable*"; intModel "HERV9-int"; locid "HERV9-int_0016"; model_cov "7070"; model_pct "83.8"; chr1 rmsk exon 173367863 173368390 3832 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 173368411 173374784 50590 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "6479"; repFamily "ERV1"; repLeft "-1957"; repStart "55"; chr1 rmsk exon 173374785 173375047 2022 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "7936"; repFamily "ERV1"; repLeft "-500"; repStart "7666"; chr1 rmsk exon 173375047 173375422 3147 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "8060"; chr1 rmsk exon 173375423 173375977 3925 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 173376472 173377172 5174 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 173377173 173380422 9645 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "4823"; repFamily "ERV1"; repLeft "-3613"; repStart "1346"; chr1 rmsk exon 173380422 173381742 11103 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "8424"; repFamily "ERV1"; repLeft "-12"; repStart "7096"; chr1 rmsk exon 173381755 173382451 5221 + . gene_id "HERV9_1q25.1"; transcript_id "HERV9_1q25.1"; locus "HERV9_1q25.1"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0016"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_1q25.1c ### chr1 rmsk gene 173394422 173401736 . + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0100"; model_cov "5502"; model_pct "96.3"; chr1 rmsk exon 173394422 173394908 2003 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-50"; repStart "1"; chr1 rmsk exon 173395079 173395123 2003 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "471"; chr1 rmsk exon 173395131 173395371 17146 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "-5468"; repStart "4"; chr1 rmsk exon 173395420 173396228 17146 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "-4701"; repStart "247"; chr1 rmsk exon 173396522 173398412 17146 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "-2861"; repStart "1014"; chr1 rmsk exon 173398726 173398911 17146 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "3028"; repFamily "ERVL"; repLeft "-2686"; repStart "2854"; chr1 rmsk exon 173398915 173401332 14795 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3233"; chr1 rmsk exon 173401333 173401736 1680 + . gene_id "ERVLB4_1q25.1c"; transcript_id "ERVLB4_1q25.1c"; locus "ERVLB4_1q25.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0100"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-70"; repStart "1"; ### PABLA_1q25.1 ### chr1 rmsk gene 173494263 173499851 . + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0008"; model_cov "5787"; model_pct "100.0"; chr1 rmsk exon 173494263 173494873 5046 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "-310"; repFamily "ERV1"; repLeft "-5325"; repStart "-930"; chr1 rmsk exon 173495176 173496290 5046 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "1062"; repFamily "ERV1"; repLeft "-3953"; repStart "-309"; chr1 rmsk exon 173496293 173496343 301 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "1289"; repFamily "ERV1"; repLeft "-3726"; repStart "1236"; chr1 rmsk exon 173496340 173498064 10990 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "3372"; repFamily "ERV1"; repLeft "-1643"; repStart "1267"; chr1 rmsk exon 173498157 173499295 10990 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "4765"; repFamily "ERV1"; repLeft "-250"; repStart "3373"; chr1 rmsk exon 173499599 173499851 10668 + . gene_id "PABLA_1q25.1"; transcript_id "PABLA_1q25.1"; locus "PABLA_1q25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0008"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-3"; repStart "4766"; ### MER4_1q25.1a ### chr1 rmsk gene 173674381 173676802 . - . gene_id "MER4_1q25.1a"; transcript_id "MER4_1q25.1a"; locus "MER4_1q25.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0050"; model_cov "1676"; model_pct "25.4"; chr1 rmsk exon 173674381 173674850 3083 - . gene_id "MER4_1q25.1a"; transcript_id "MER4_1q25.1a"; locus "MER4_1q25.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0050"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 173674852 173675330 15271 - . gene_id "MER4_1q25.1a"; transcript_id "MER4_1q25.1a"; locus "MER4_1q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0050"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6119"; repStart "0"; chr1 rmsk exon 173675633 173676802 15271 - . gene_id "MER4_1q25.1a"; transcript_id "MER4_1q25.1a"; locus "MER4_1q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0050"; repClass "LTR"; repEnd "6118"; repFamily "ERV1"; repLeft "4921"; repStart "-480"; ### MER4_1q25.1b ### chr1 rmsk gene 173676854 173678074 . - . gene_id "MER4_1q25.1b"; transcript_id "MER4_1q25.1b"; locus "MER4_1q25.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0051"; model_cov "1251"; model_pct "19.0"; chr1 rmsk exon 173676854 173677910 15271 - . gene_id "MER4_1q25.1b"; transcript_id "MER4_1q25.1b"; locus "MER4_1q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0051"; repClass "LTR"; repEnd "6118"; repFamily "ERV1"; repLeft "5034"; repStart "-480"; chr1 rmsk exon 173677909 173678074 620 - . gene_id "MER4_1q25.1b"; transcript_id "MER4_1q25.1b"; locus "MER4_1q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0051"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3514"; repStart "-2917"; ### MER4_1q25.1c ### chr1 rmsk gene 173681140 173682684 . - . gene_id "MER4_1q25.1c"; transcript_id "MER4_1q25.1c"; locus "MER4_1q25.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0052"; model_cov "1280"; model_pct "19.4"; chr1 rmsk exon 173681140 173681303 612 - . gene_id "MER4_1q25.1c"; transcript_id "MER4_1q25.1c"; locus "MER4_1q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0052"; repClass "LTR"; repEnd "3508"; repFamily "ERV1"; repLeft "3343"; repStart "-3090"; chr1 rmsk exon 173681324 173681769 5100 - . gene_id "MER4_1q25.1c"; transcript_id "MER4_1q25.1c"; locus "MER4_1q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0052"; repClass "LTR"; repEnd "2277"; repFamily "ERV1"; repLeft "1794"; repStart "-4321"; chr1 rmsk exon 173682065 173682684 5100 - . gene_id "MER4_1q25.1c"; transcript_id "MER4_1q25.1c"; locus "MER4_1q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0052"; repClass "LTR"; repEnd "1793"; repFamily "ERV1"; repLeft "1161"; repStart "-4805"; ### MER4_1q25.1d ### chr1 rmsk gene 173682724 173683771 . - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0053"; model_cov "1053"; model_pct "16.0"; chr1 rmsk exon 173682724 173682842 1114 - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0053"; repClass "LTR"; repEnd "2142"; repFamily "ERV1"; repLeft "2024"; repStart "-4456"; chr1 rmsk exon 173682841 173682891 393 - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0053"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; chr1 rmsk exon 173682908 173682983 267 - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0053"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "687"; repStart "-5845"; chr1 rmsk exon 173682988 173683650 3029 - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0053"; repClass "LTR"; repEnd "820"; repFamily "ERV1"; repLeft "1"; repStart "-5778"; chr1 rmsk exon 173683654 173683771 838 - . gene_id "MER4_1q25.1d"; transcript_id "MER4_1q25.1d"; locus "MER4_1q25.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0053"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "353"; repStart "0"; ### HERVIP10FH_1q25.1 ### chr1 rmsk gene 173683772 173688508 . - . gene_id "HERVIP10FH_1q25.1"; transcript_id "HERVIP10FH_1q25.1"; locus "HERVIP10FH_1q25.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0011"; model_cov "4238"; model_pct "83.1"; chr1 rmsk exon 173683772 173684302 3197 - . gene_id "HERVIP10FH_1q25.1"; transcript_id "HERVIP10FH_1q25.1"; locus "HERVIP10FH_1q25.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0011"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 173684303 173688508 27768 - . gene_id "HERVIP10FH_1q25.1"; transcript_id "HERVIP10FH_1q25.1"; locus "HERVIP10FH_1q25.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0011"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "864"; repStart "0"; ### HERVIP10F_1q25.1 ### chr1 rmsk gene 173688627 173692249 . - . gene_id "HERVIP10F_1q25.1"; transcript_id "HERVIP10F_1q25.1"; locus "HERVIP10F_1q25.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0008"; model_cov "2555"; model_pct "33.0"; chr1 rmsk exon 173688627 173688905 411 - . gene_id "HERVIP10F_1q25.1"; transcript_id "HERVIP10F_1q25.1"; locus "HERVIP10F_1q25.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0008"; repClass "LTR"; repEnd "6500"; repFamily "ERV1"; repLeft "6351"; repStart "-1237"; chr1 rmsk exon 173688894 173691401 15353 - . gene_id "HERVIP10F_1q25.1"; transcript_id "HERVIP10F_1q25.1"; locus "HERVIP10F_1q25.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0008"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "8"; repStart "-5323"; chr1 rmsk exon 173691409 173691513 2978 - . gene_id "HERVIP10F_1q25.1"; transcript_id "HERVIP10F_1q25.1"; locus "HERVIP10F_1q25.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0008"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "416"; repStart "0"; chr1 rmsk exon 173691809 173692249 2978 - . gene_id "HERVIP10F_1q25.1"; transcript_id "HERVIP10F_1q25.1"; locus "HERVIP10F_1q25.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0008"; repClass "LTR"; repEnd "415"; repFamily "ERV1"; repLeft "1"; repStart "-96"; ### ERVLE_1q25.1a ### chr1 rmsk gene 174090544 174091600 . - . gene_id "ERVLE_1q25.1a"; transcript_id "ERVLE_1q25.1a"; locus "ERVLE_1q25.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0250"; model_cov "781"; model_pct "13.8"; chr1 rmsk exon 174090544 174091050 1677 - . gene_id "ERVLE_1q25.1a"; transcript_id "ERVLE_1q25.1a"; locus "ERVLE_1q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0250"; repClass "LTR"; repEnd "1627"; repFamily "ERVL"; repLeft "1126"; repStart "-4040"; chr1 rmsk exon 174091343 174091600 1677 - . gene_id "ERVLE_1q25.1a"; transcript_id "ERVLE_1q25.1a"; locus "ERVLE_1q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0250"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "845"; repStart "-4542"; ### ERVLE_1q25.1b ### chr1 rmsk gene 174103464 174104840 . + . gene_id "ERVLE_1q25.1b"; transcript_id "ERVLE_1q25.1b"; locus "ERVLE_1q25.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0252"; model_cov "1209"; model_pct "21.3"; chr1 rmsk exon 174103464 174103659 774 + . gene_id "ERVLE_1q25.1b"; transcript_id "ERVLE_1q25.1b"; locus "ERVLE_1q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0252"; repClass "LTR"; repEnd "3025"; repFamily "ERVL"; repLeft "-2642"; repStart "2824"; chr1 rmsk exon 174103672 174104119 1014 + . gene_id "ERVLE_1q25.1b"; transcript_id "ERVLE_1q25.1b"; locus "ERVLE_1q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0252"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2087"; repStart "3110"; chr1 rmsk exon 174104314 174104840 1681 + . gene_id "ERVLE_1q25.1b"; transcript_id "ERVLE_1q25.1b"; locus "ERVLE_1q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0252"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "-1469"; repStart "3660"; ### ERVLE_1q25.1c ### chr1 rmsk gene 174108781 174109242 . + . gene_id "ERVLE_1q25.1c"; transcript_id "ERVLE_1q25.1c"; locus "ERVLE_1q25.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0253"; model_cov "597"; model_pct "10.5"; chr1 rmsk exon 174108781 174109242 1166 + . gene_id "ERVLE_1q25.1c"; transcript_id "ERVLE_1q25.1c"; locus "ERVLE_1q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0253"; repClass "LTR"; repEnd "5234"; repFamily "ERVL"; repLeft "-433"; repStart "4637"; ### MER61_1q25.1a ### chr1 rmsk gene 174297228 174299323 . - . gene_id "MER61_1q25.1a"; transcript_id "MER61_1q25.1a"; locus "MER61_1q25.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0028"; model_cov "2018"; model_pct "38.7"; chr1 rmsk exon 174297228 174297547 1538 - . gene_id "MER61_1q25.1a"; transcript_id "MER61_1q25.1a"; locus "MER61_1q25.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0028"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 174297548 174297869 2111 - . gene_id "MER61_1q25.1a"; transcript_id "MER61_1q25.1a"; locus "MER61_1q25.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0028"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4863"; repStart "0"; chr1 rmsk exon 174297841 174299323 16576 - . gene_id "MER61_1q25.1a"; transcript_id "MER61_1q25.1a"; locus "MER61_1q25.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0028"; repClass "LTR"; repEnd "4826"; repFamily "ERV1"; repLeft "3162"; repStart "-391"; ### MER61_1q25.1b ### chr1 rmsk gene 174299363 174300630 . - . gene_id "MER61_1q25.1b"; transcript_id "MER61_1q25.1b"; locus "MER61_1q25.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0029"; model_cov "1064"; model_pct "20.4"; chr1 rmsk exon 174299363 174300243 16576 - . gene_id "MER61_1q25.1b"; transcript_id "MER61_1q25.1b"; locus "MER61_1q25.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0029"; repClass "LTR"; repEnd "4826"; repFamily "ERV1"; repLeft "3835"; repStart "-391"; chr1 rmsk exon 174300549 174300630 16576 - . gene_id "MER61_1q25.1b"; transcript_id "MER61_1q25.1b"; locus "MER61_1q25.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0029"; repClass "LTR"; repEnd "2385"; repFamily "ERV1"; repLeft "2312"; repStart "-2832"; ### HERVL_1q25.1 ### chr1 rmsk gene 175242255 175248747 . + . gene_id "HERVL_1q25.1"; transcript_id "HERVL_1q25.1"; locus "HERVL_1q25.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0087"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 175242255 175242656 2836 + . gene_id "HERVL_1q25.1"; transcript_id "HERVL_1q25.1"; locus "HERVL_1q25.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0087"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr1 rmsk exon 175242967 175248539 44874 + . gene_id "HERVL_1q25.1"; transcript_id "HERVL_1q25.1"; locus "HERVL_1q25.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0087"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 175248540 175248681 1148 + . gene_id "HERVL_1q25.1"; transcript_id "HERVL_1q25.1"; locus "HERVL_1q25.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0087"; repClass "LTR"; repEnd "142"; repFamily "ERVL"; repLeft "-302"; repStart "1"; chr1 rmsk exon 175248698 175248747 384 + . gene_id "HERVL_1q25.1"; transcript_id "HERVL_1q25.1"; locus "HERVL_1q25.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0087"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "393"; ### PRIMA41_1q25.1 ### chr1 rmsk gene 175269253 175277820 . + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0007"; model_cov "7561"; model_pct "97.5"; chr1 rmsk exon 175269253 175269782 2660 + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0007"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr1 rmsk exon 175269784 175270246 2700 + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0007"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-7286"; repStart "1"; chr1 rmsk exon 175270246 175275346 52949 + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0007"; repClass "LTR"; repEnd "5825"; repFamily "ERV1"; repLeft "-1931"; repStart "658"; chr1 rmsk exon 175275380 175277279 52949 + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0007"; repClass "LTR"; repEnd "7751"; repFamily "ERV1"; repLeft "-5"; repStart "5826"; chr1 rmsk exon 175277284 175277820 2512 + . gene_id "PRIMA41_1q25.1"; transcript_id "PRIMA41_1q25.1"; locus "PRIMA41_1q25.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0007"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_1q25.1a ### chr1 rmsk gene 175288743 175290176 . + . gene_id "MER101_1q25.1a"; transcript_id "MER101_1q25.1a"; locus "MER101_1q25.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0031"; model_cov "1064"; model_pct "16.0"; chr1 rmsk exon 175288743 175289089 1784 + . gene_id "MER101_1q25.1a"; transcript_id "MER101_1q25.1a"; locus "MER101_1q25.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0031"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "-19"; repStart "1"; chr1 rmsk exon 175289147 175290049 2025 + . gene_id "MER101_1q25.1a"; transcript_id "MER101_1q25.1a"; locus "MER101_1q25.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0031"; repClass "LTR"; repEnd "2753"; repFamily "ERV1"; repLeft "-3886"; repStart "1822"; chr1 rmsk exon 175290042 175290176 701 + . gene_id "MER101_1q25.1a"; transcript_id "MER101_1q25.1a"; locus "MER101_1q25.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0031"; repClass "LTR"; repEnd "-44"; repFamily "ERV1"; repLeft "-6683"; repStart "-177"; ### MER101_1q25.1b ### chr1 rmsk gene 175293411 175297047 . + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0032"; model_cov "2776"; model_pct "41.8"; chr1 rmsk exon 175293411 175293719 1027 + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0032"; repClass "LTR"; repEnd "251"; repFamily "ERV1"; repLeft "-6388"; repStart "-63"; chr1 rmsk exon 175294025 175294736 2335 + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0032"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "1733"; chr1 rmsk exon 175294863 175295811 5649 + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0032"; repClass "LTR"; repEnd "3717"; repFamily "ERV1"; repLeft "-2922"; repStart "2755"; chr1 rmsk exon 175296106 175296477 5649 + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0032"; repClass "LTR"; repEnd "3915"; repFamily "ERV1"; repLeft "-2724"; repStart "3718"; chr1 rmsk exon 175296777 175297047 2922 + . gene_id "MER101_1q25.1b"; transcript_id "MER101_1q25.1b"; locus "MER101_1q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0032"; repClass "LTR"; repEnd "5349"; repFamily "ERV1"; repLeft "-1290"; repStart "5078"; ### MER61_1q25.1c ### chr1 rmsk gene 176096003 176102384 . + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0030"; model_cov "4731"; model_pct "90.7"; chr1 rmsk exon 176096003 176096196 1089 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0030"; repClass "LTR"; repEnd "323"; repFamily "ERV1"; repLeft "-104"; repStart "73"; chr1 rmsk exon 176096565 176097049 2627 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0030"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "364"; chr1 rmsk exon 176097050 176097586 27184 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0030"; repClass "LTR"; repEnd "1479"; repFamily "ERV1"; repLeft "-3738"; repStart "958"; chr1 rmsk exon 176097888 176099505 27184 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0030"; repClass "LTR"; repEnd "3044"; repFamily "ERV1"; repLeft "-2173"; repStart "1480"; chr1 rmsk exon 176099542 176100107 27184 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0030"; repClass "LTR"; repEnd "3626"; repFamily "ERV1"; repLeft "-1591"; repStart "3045"; chr1 rmsk exon 176100410 176101955 27184 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0030"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "3627"; chr1 rmsk exon 176101956 176102384 3034 + . gene_id "MER61_1q25.1c"; transcript_id "MER61_1q25.1c"; locus "MER61_1q25.1c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0030"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLB_1q25.2 ### chr1 rmsk gene 176320885 176322922 . - . gene_id "PABLB_1q25.2"; transcript_id "PABLB_1q25.2"; locus "PABLB_1q25.2"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0004"; model_cov "2023"; model_pct "28.4"; chr1 rmsk exon 176320885 176322324 1262 - . gene_id "PABLB_1q25.2"; transcript_id "PABLB_1q25.2"; locus "PABLB_1q25.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0004"; repClass "LTR"; repEnd "5224"; repFamily "ERV1"; repLeft "3783"; repStart "-1898"; chr1 rmsk exon 176322335 176322922 363 - . gene_id "PABLB_1q25.2"; transcript_id "PABLB_1q25.2"; locus "PABLB_1q25.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0004"; repClass "LTR"; repEnd "1539"; repFamily "ERV1"; repLeft "957"; repStart "-5583"; ### ERV316A3_1q25.2a ### chr1 rmsk gene 177291956 177294248 . - . gene_id "ERV316A3_1q25.2a"; transcript_id "ERV316A3_1q25.2a"; locus "ERV316A3_1q25.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0130"; model_cov "1983"; model_pct "37.9"; chr1 rmsk exon 177291956 177293184 3070 - . gene_id "ERV316A3_1q25.2a"; transcript_id "ERV316A3_1q25.2a"; locus "ERV316A3_1q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0130"; repClass "LTR"; repEnd "3993"; repFamily "ERVL"; repLeft "2701"; repStart "-1233"; chr1 rmsk exon 177293571 177294248 3070 - . gene_id "ERV316A3_1q25.2a"; transcript_id "ERV316A3_1q25.2a"; locus "ERV316A3_1q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0130"; repClass "LTR"; repEnd "2700"; repFamily "ERVL"; repLeft "2009"; repStart "-2526"; ### ERV316A3_1q25.2b ### chr1 rmsk gene 177455894 177461782 . - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0132"; model_cov "4834"; model_pct "92.5"; chr1 rmsk exon 177455894 177456504 704 - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0132"; repClass "LTR"; repEnd "5083"; repFamily "ERVL"; repLeft "4473"; repStart "-143"; chr1 rmsk exon 177456579 177459902 9157 - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0132"; repClass "LTR"; repEnd "4227"; repFamily "ERVL"; repLeft "938"; repStart "-999"; chr1 rmsk exon 177460269 177460871 9157 - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0132"; repClass "LTR"; repEnd "937"; repFamily "ERVL"; repLeft "311"; repStart "-4289"; chr1 rmsk exon 177461131 177461427 985 - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0132"; repClass "LTR"; repEnd "540"; repFamily "ERVL"; repLeft "231"; repStart "-4686"; chr1 rmsk exon 177461429 177461782 633 - . gene_id "ERV316A3_1q25.2b"; transcript_id "ERV316A3_1q25.2b"; locus "ERV316A3_1q25.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0132"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "18"; repStart "-8"; ### HERVH_1q25.2 ### chr1 rmsk gene 178040241 178045930 . + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0065"; model_cov "5137"; model_pct "66.6"; chr1 rmsk exon 178040241 178040673 3643 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 178040674 178041186 1836 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "-7191"; repStart "1"; chr1 rmsk exon 178041157 178043398 13281 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "800"; chr1 rmsk exon 178043378 178043824 2896 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3140"; chr1 rmsk exon 178043819 178045066 6948 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "6420"; repFamily "ERV1"; repLeft "-1293"; repStart "4863"; chr1 rmsk exon 178045047 178045465 2784 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7296"; chr1 rmsk exon 178045466 178045930 3985 + . gene_id "HERVH_1q25.2"; transcript_id "HERVH_1q25.2"; locus "HERVH_1q25.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0065"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_1q25.2 ### chr1 rmsk gene 178141219 178143059 . - . gene_id "HERVW_1q25.2"; transcript_id "HERVW_1q25.2"; locus "HERVW_1q25.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0017"; model_cov "1525"; model_pct "17.7"; chr1 rmsk exon 178141219 178141546 2180 - . gene_id "HERVW_1q25.2"; transcript_id "HERVW_1q25.2"; locus "HERVW_1q25.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0017"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr1 rmsk exon 178141547 178141838 2424 - . gene_id "HERVW_1q25.2"; transcript_id "HERVW_1q25.2"; locus "HERVW_1q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0017"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr1 rmsk exon 178141829 178141867 309 - . gene_id "HERVW_1q25.2"; transcript_id "HERVW_1q25.2"; locus "HERVW_1q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0017"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr1 rmsk exon 178141864 178143059 9873 - . gene_id "HERVW_1q25.2"; transcript_id "HERVW_1q25.2"; locus "HERVW_1q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0017"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "5951"; repStart "-1479"; ### HERVL_1q25.2 ### chr1 rmsk gene 178199724 178204344 . + . gene_id "HERVL_1q25.2"; transcript_id "HERVL_1q25.2"; locus "HERVL_1q25.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0088"; model_cov "4288"; model_pct "75.8"; chr1 rmsk exon 178199724 178200166 3333 + . gene_id "HERVL_1q25.2"; transcript_id "HERVL_1q25.2"; locus "HERVL_1q25.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0088"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 178200168 178202189 14885 + . gene_id "HERVL_1q25.2"; transcript_id "HERVL_1q25.2"; locus "HERVL_1q25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0088"; repClass "LTR"; repEnd "2074"; repFamily "ERVL"; repLeft "-3580"; repStart "2"; chr1 rmsk exon 178202186 178204344 15723 + . gene_id "HERVL_1q25.2"; transcript_id "HERVL_1q25.2"; locus "HERVL_1q25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0088"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3438"; ### HML3_1q25.2 ### chr1 rmsk gene 178554076 178560481 . - . gene_id "HML3_1q25.2"; transcript_id "HML3_1q25.2"; locus "HML3_1q25.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0017"; model_cov "5475"; model_pct "90.9"; chr1 rmsk exon 178554076 178554562 3966 - . gene_id "HML3_1q25.2"; transcript_id "HML3_1q25.2"; locus "HML3_1q25.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0017"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 178554563 178559396 33775 - . gene_id "HML3_1q25.2"; transcript_id "HML3_1q25.2"; locus "HML3_1q25.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0017"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1125"; repStart "0"; chr1 rmsk exon 178559398 178559966 4562 - . gene_id "HML3_1q25.2"; transcript_id "HML3_1q25.2"; locus "HML3_1q25.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0017"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr1 rmsk exon 178559967 178560481 4181 - . gene_id "HML3_1q25.2"; transcript_id "HML3_1q25.2"; locus "HML3_1q25.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0017"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML6_1q25.2 ### chr1 rmsk gene 179437126 179443269 . - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0004"; model_cov "5004"; model_pct "69.5"; chr1 rmsk exon 179437126 179437570 2711 - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0004"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr1 rmsk exon 179437571 179437869 20125 - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0004"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "6910"; repStart "0"; chr1 rmsk exon 179438200 179441037 20125 - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0004"; repClass "LTR"; repEnd "6909"; repFamily "ERVK"; repLeft "3999"; repStart "-293"; chr1 rmsk exon 179441034 179442796 11370 - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0004"; repClass "LTR"; repEnd "1821"; repFamily "ERVK"; repLeft "19"; repStart "-5381"; chr1 rmsk exon 179442799 179443269 2927 - . gene_id "HML6_1q25.2"; transcript_id "HML6_1q25.2"; locus "HML6_1q25.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0004"; repClass "LTR"; repEnd "461"; repFamily "ERVK"; repLeft "1"; repStart "-23"; ### ERVLB4_1q25.2 ### chr1 rmsk gene 179583981 179585324 . + . gene_id "ERVLB4_1q25.2"; transcript_id "ERVLB4_1q25.2"; locus "ERVLB4_1q25.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0102"; model_cov "1059"; model_pct "18.5"; chr1 rmsk exon 179583981 179584182 1655 + . gene_id "ERVLB4_1q25.2"; transcript_id "ERVLB4_1q25.2"; locus "ERVLB4_1q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0102"; repClass "LTR"; repEnd "1677"; repFamily "ERVL"; repLeft "-4037"; repStart "1469"; chr1 rmsk exon 179584506 179585324 1655 + . gene_id "ERVLB4_1q25.2"; transcript_id "ERVLB4_1q25.2"; locus "ERVLB4_1q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0102"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-3185"; repStart "1678"; ### ERVLE_1q25.3a ### chr1 rmsk gene 180553748 180556425 . + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0254"; model_cov "2034"; model_pct "35.9"; chr1 rmsk exon 180553748 180553978 3160 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "1894"; repFamily "ERVL"; repLeft "-3773"; repStart "1667"; chr1 rmsk exon 180554418 180555254 3160 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "2772"; repFamily "ERVL"; repLeft "-2895"; repStart "1895"; chr1 rmsk exon 180555263 180555561 1108 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "3253"; repFamily "ERVL"; repLeft "-2414"; repStart "2915"; chr1 rmsk exon 180555576 180555877 1100 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "3592"; repFamily "ERVL"; repLeft "-2075"; repStart "3288"; chr1 rmsk exon 180555890 180555992 290 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "-1630"; repStart "3933"; chr1 rmsk exon 180556262 180556425 664 + . gene_id "ERVLE_1q25.3a"; transcript_id "ERVLE_1q25.3a"; locus "ERVLE_1q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0254"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-1394"; repStart "4089"; ### ERV316A3_1q25.3a ### chr1 rmsk gene 180556453 180557450 . + . gene_id "ERV316A3_1q25.3a"; transcript_id "ERV316A3_1q25.3a"; locus "ERV316A3_1q25.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0133"; model_cov "1059"; model_pct "20.3"; chr1 rmsk exon 180556453 180557450 2387 + . gene_id "ERV316A3_1q25.3a"; transcript_id "ERV316A3_1q25.3a"; locus "ERV316A3_1q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0133"; repClass "LTR"; repEnd "3791"; repFamily "ERVL"; repLeft "-1435"; repStart "2732"; ### ERVLE_1q25.3b ### chr1 rmsk gene 180621703 180622915 . - . gene_id "ERVLE_1q25.3b"; transcript_id "ERVLE_1q25.3b"; locus "ERVLE_1q25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0255"; model_cov "1262"; model_pct "22.3"; chr1 rmsk exon 180621703 180622072 889 - . gene_id "ERVLE_1q25.3b"; transcript_id "ERVLE_1q25.3b"; locus "ERVLE_1q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0255"; repClass "LTR"; repEnd "5480"; repFamily "ERVL"; repLeft "5091"; repStart "-187"; chr1 rmsk exon 180622069 180622915 1914 - . gene_id "ERVLE_1q25.3b"; transcript_id "ERVLE_1q25.3b"; locus "ERVLE_1q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0255"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "3963"; repStart "-831"; ### ERVLE_1q25.3c ### chr1 rmsk gene 180798452 180801349 . - . gene_id "ERVLE_1q25.3c"; transcript_id "ERVLE_1q25.3c"; locus "ERVLE_1q25.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0256"; model_cov "2433"; model_pct "42.9"; chr1 rmsk exon 180798452 180798610 2043 - . gene_id "ERVLE_1q25.3c"; transcript_id "ERVLE_1q25.3c"; locus "ERVLE_1q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0256"; repClass "LTR"; repEnd "5253"; repFamily "ERVL"; repLeft "5085"; repStart "-414"; chr1 rmsk exon 180798914 180799806 2043 - . gene_id "ERVLE_1q25.3c"; transcript_id "ERVLE_1q25.3c"; locus "ERVLE_1q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0256"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4074"; repStart "-583"; chr1 rmsk exon 180799780 180800309 1348 - . gene_id "ERVLE_1q25.3c"; transcript_id "ERVLE_1q25.3c"; locus "ERVLE_1q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0256"; repClass "LTR"; repEnd "2472"; repFamily "ERVL"; repLeft "1900"; repStart "-3195"; chr1 rmsk exon 180800678 180801349 2080 - . gene_id "ERVLE_1q25.3c"; transcript_id "ERVLE_1q25.3c"; locus "ERVLE_1q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0256"; repClass "LTR"; repEnd "1895"; repFamily "ERVL"; repLeft "1212"; repStart "-3772"; ### ERV316A3_1q25.3b ### chr1 rmsk gene 180893781 180896927 . + . gene_id "ERV316A3_1q25.3b"; transcript_id "ERV316A3_1q25.3b"; locus "ERV316A3_1q25.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0134"; model_cov "3162"; model_pct "60.5"; chr1 rmsk exon 180893781 180894264 1238 + . gene_id "ERV316A3_1q25.3b"; transcript_id "ERV316A3_1q25.3b"; locus "ERV316A3_1q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0134"; repClass "LTR"; repEnd "899"; repFamily "ERVL"; repLeft "-4327"; repStart "377"; chr1 rmsk exon 180894330 180894678 1184 + . gene_id "ERV316A3_1q25.3b"; transcript_id "ERV316A3_1q25.3b"; locus "ERV316A3_1q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0134"; repClass "LTR"; repEnd "1148"; repFamily "ERVL"; repLeft "-4078"; repStart "775"; chr1 rmsk exon 180894754 180896927 7897 + . gene_id "ERV316A3_1q25.3b"; transcript_id "ERV316A3_1q25.3b"; locus "ERV316A3_1q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0134"; repClass "LTR"; repEnd "4473"; repFamily "ERVL"; repLeft "-753"; repStart "2206"; ### HERVK11_1q25.3 ### chr1 rmsk gene 181245995 181255232 . + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0010"; model_cov "7098"; model_pct "89.2"; chr1 rmsk exon 181245995 181247076 3732 + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0010"; repClass "LTR"; repEnd "1262"; repFamily "ERVK"; repLeft "-4"; repStart "31"; chr1 rmsk exon 181247082 181248803 12832 + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0010"; repClass "LTR"; repEnd "1692"; repFamily "ERVK"; repLeft "-6261"; repStart "1"; chr1 rmsk exon 181248803 181249801 7812 + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0010"; repClass "LTR"; repEnd "3418"; repFamily "ERVK"; repLeft "-4535"; repStart "2417"; chr1 rmsk exon 181249802 181254226 34937 + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0010"; repClass "LTR"; repEnd "7952"; repFamily "ERVK"; repLeft "-1"; repStart "3546"; chr1 rmsk exon 181254228 181255232 4534 + . gene_id "HERVK11_1q25.3"; transcript_id "HERVK11_1q25.3"; locus "HERVK11_1q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0010"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_1q25.3 ### chr1 rmsk gene 181829663 181833982 . + . gene_id "HERV9_1q25.3"; transcript_id "HERV9_1q25.3"; locus "HERV9_1q25.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0018"; model_cov "2740"; model_pct "32.5"; chr1 rmsk exon 181829663 181832241 8569 + . gene_id "HERV9_1q25.3"; transcript_id "HERV9_1q25.3"; locus "HERV9_1q25.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0018"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "5696"; chr1 rmsk exon 181832242 181833982 9431 + . gene_id "HERV9_1q25.3"; transcript_id "HERV9_1q25.3"; locus "HERV9_1q25.3"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0018"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_1q25.3c ### chr1 rmsk gene 181996552 181997560 . - . gene_id "ERV316A3_1q25.3c"; transcript_id "ERV316A3_1q25.3c"; locus "ERV316A3_1q25.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0135"; model_cov "1040"; model_pct "19.9"; chr1 rmsk exon 181996552 181997560 2058 - . gene_id "ERV316A3_1q25.3c"; transcript_id "ERV316A3_1q25.3c"; locus "ERV316A3_1q25.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0135"; repClass "LTR"; repEnd "2330"; repFamily "ERVL"; repLeft "1290"; repStart "-2896"; ### ERV316A3_1q25.3d ### chr1 rmsk gene 181997613 181999203 . - . gene_id "ERV316A3_1q25.3d"; transcript_id "ERV316A3_1q25.3d"; locus "ERV316A3_1q25.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0136"; model_cov "1033"; model_pct "19.8"; chr1 rmsk exon 181997613 181998475 2058 - . gene_id "ERV316A3_1q25.3d"; transcript_id "ERV316A3_1q25.3d"; locus "ERV316A3_1q25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0136"; repClass "LTR"; repEnd "2330"; repFamily "ERVL"; repLeft "1438"; repStart "-2896"; chr1 rmsk exon 181998625 181998760 336 - . gene_id "ERV316A3_1q25.3d"; transcript_id "ERV316A3_1q25.3d"; locus "ERV316A3_1q25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0136"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "270"; repStart "-4815"; chr1 rmsk exon 181998772 181999203 1017 - . gene_id "ERV316A3_1q25.3d"; transcript_id "ERV316A3_1q25.3d"; locus "ERV316A3_1q25.3d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0136"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "15"; repStart "0"; ### MER61_1q25.3 ### chr1 rmsk gene 182035067 182039796 . - . gene_id "MER61_1q25.3"; transcript_id "MER61_1q25.3"; locus "MER61_1q25.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0031"; model_cov "4495"; model_pct "86.2"; chr1 rmsk exon 182035067 182035458 2277 - . gene_id "MER61_1q25.3"; transcript_id "MER61_1q25.3"; locus "MER61_1q25.3"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0031"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr1 rmsk exon 182035459 182035493 2004 - . gene_id "MER61_1q25.3"; transcript_id "MER61_1q25.3"; locus "MER61_1q25.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0031"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5183"; repStart "0"; chr1 rmsk exon 182035541 182039796 12927 - . gene_id "MER61_1q25.3"; transcript_id "MER61_1q25.3"; locus "MER61_1q25.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0031"; repClass "LTR"; repEnd "5182"; repFamily "ERV1"; repLeft "721"; repStart "-35"; ### ERV316A3_1q25.3e ### chr1 rmsk gene 182255484 182256369 . - . gene_id "ERV316A3_1q25.3e"; transcript_id "ERV316A3_1q25.3e"; locus "ERV316A3_1q25.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0137"; model_cov "699"; model_pct "13.4"; chr1 rmsk exon 182255484 182255948 1569 - . gene_id "ERV316A3_1q25.3e"; transcript_id "ERV316A3_1q25.3e"; locus "ERV316A3_1q25.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0137"; repClass "LTR"; repEnd "3316"; repFamily "ERVL"; repLeft "2743"; repStart "-1910"; chr1 rmsk exon 182256243 182256369 1068 - . gene_id "ERV316A3_1q25.3e"; transcript_id "ERV316A3_1q25.3e"; locus "ERV316A3_1q25.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0137"; repClass "LTR"; repEnd "2868"; repFamily "ERVL"; repLeft "2742"; repStart "-2358"; ### ERVLE_1q25.3d ### chr1 rmsk gene 182409302 182411144 . + . gene_id "ERVLE_1q25.3d"; transcript_id "ERVLE_1q25.3d"; locus "ERVLE_1q25.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0257"; model_cov "1077"; model_pct "19.0"; chr1 rmsk exon 182409302 182409425 1114 + . gene_id "ERVLE_1q25.3d"; transcript_id "ERVLE_1q25.3d"; locus "ERVLE_1q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0257"; repClass "LTR"; repEnd "301"; repFamily "ERVL"; repLeft "-5366"; repStart "182"; chr1 rmsk exon 182409644 182409941 1114 + . gene_id "ERVLE_1q25.3d"; transcript_id "ERVLE_1q25.3d"; locus "ERVLE_1q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0257"; repClass "LTR"; repEnd "588"; repFamily "ERVL"; repLeft "-5079"; repStart "302"; chr1 rmsk exon 182410250 182410817 1114 + . gene_id "ERVLE_1q25.3d"; transcript_id "ERVLE_1q25.3d"; locus "ERVLE_1q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0257"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4517"; repStart "589"; chr1 rmsk exon 182411023 182411144 1114 + . gene_id "ERVLE_1q25.3d"; transcript_id "ERVLE_1q25.3d"; locus "ERVLE_1q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0257"; repClass "LTR"; repEnd "1262"; repFamily "ERVL"; repLeft "-4405"; repStart "1151"; ### ERV316A3_1q25.3f ### chr1 rmsk gene 182494569 182497220 . - . gene_id "ERV316A3_1q25.3f"; transcript_id "ERV316A3_1q25.3f"; locus "ERV316A3_1q25.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0139"; model_cov "2221"; model_pct "42.5"; chr1 rmsk exon 182494569 182495967 4528 - . gene_id "ERV316A3_1q25.3f"; transcript_id "ERV316A3_1q25.3f"; locus "ERV316A3_1q25.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0139"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "3179"; repStart "-613"; chr1 rmsk exon 182496385 182497220 4528 - . gene_id "ERV316A3_1q25.3f"; transcript_id "ERV316A3_1q25.3f"; locus "ERV316A3_1q25.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0139"; repClass "LTR"; repEnd "3178"; repFamily "ERVL"; repLeft "2391"; repStart "-2048"; ### HUERSP2_1q25.3 ### chr1 rmsk gene 182512395 182516340 . - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0011"; model_cov "2747"; model_pct "89.0"; chr1 rmsk exon 182512395 182513158 4664 - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; repName "LTR1F1"; geneRegion "ltr"; locid "HUERS-P2-int_0011"; repClass "LTR"; repEnd "729"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 182513159 182513897 7735 - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0011"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2336"; repStart "0"; chr1 rmsk exon 182514193 182514745 7735 - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0011"; repClass "LTR"; repEnd "2335"; repFamily "ERV1"; repLeft "1787"; repStart "-753"; chr1 rmsk exon 182514753 182516156 6821 - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0011"; repClass "LTR"; repEnd "1558"; repFamily "ERV1"; repLeft "111"; repStart "-1530"; chr1 rmsk exon 182516175 182516340 1002 - . gene_id "HUERSP2_1q25.3"; transcript_id "HUERSP2_1q25.3"; locus "HUERSP2_1q25.3"; repName "LTR1F1"; geneRegion "ltr"; locid "HUERS-P2-int_0011"; repClass "LTR"; repEnd "161"; repFamily "ERV1"; repLeft "1"; repStart "-568"; ### ERVLE_1q25.3e ### chr1 rmsk gene 182995614 183001083 . - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0258"; model_cov "2520"; model_pct "44.5"; chr1 rmsk exon 182995614 182995873 865 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "4557"; repFamily "ERVL"; repLeft "4294"; repStart "-1110"; chr1 rmsk exon 182997297 182997703 1427 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "3781"; repStart "-1516"; chr1 rmsk exon 182998289 182999240 1427 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "3780"; repFamily "ERVL"; repLeft "2794"; repStart "-1887"; chr1 rmsk exon 182999453 182999980 1280 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "2339"; repFamily "ERVL"; repLeft "1792"; repStart "-3328"; chr1 rmsk exon 183000730 183000904 310 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "1084"; repFamily "ERVL"; repLeft "908"; repStart "-4583"; chr1 rmsk exon 183000904 183001083 390 - . gene_id "ERVLE_1q25.3e"; transcript_id "ERVLE_1q25.3e"; locus "ERVLE_1q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0258"; repClass "LTR"; repEnd "294"; repFamily "ERVL"; repLeft "116"; repStart "-5373"; ### HERVH_1q25.3 ### chr1 rmsk gene 183613210 183619373 . + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0066"; model_cov "4918"; model_pct "63.8"; chr1 rmsk exon 183613210 183613641 2647 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 183613649 183617077 15880 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "-4709"; repStart "6"; chr1 rmsk exon 183617048 183617194 819 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 183617185 183617684 3186 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 183617687 183618346 4120 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 183618348 183618563 1330 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 183618564 183618941 2504 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 183618943 183619373 2692 + . gene_id "HERVH_1q25.3"; transcript_id "HERVH_1q25.3"; locus "HERVH_1q25.3"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0066"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### HERVH48_1q25.3 ### chr1 rmsk gene 183702773 183709310 . - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0002"; model_cov "5600"; model_pct "84.2"; chr1 rmsk exon 183702773 183703173 2597 - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0002"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 183703174 183703652 3717 - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0002"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6175"; repStart "0"; chr1 rmsk exon 183703645 183708335 32226 - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0002"; repClass "LTR"; repEnd "5144"; repFamily "ERV1"; repLeft "328"; repStart "-1510"; chr1 rmsk exon 183708608 183708906 1919 - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0002"; repClass "LTR"; repEnd "306"; repFamily "ERV1"; repLeft "1"; repStart "-6348"; chr1 rmsk exon 183708907 183709310 2777 - . gene_id "HERVH48_1q25.3"; transcript_id "HERVH48_1q25.3"; locus "HERVH48_1q25.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0002"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1q25.3f ### chr1 rmsk gene 184258841 184259708 . - . gene_id "ERVLE_1q25.3f"; transcript_id "ERVLE_1q25.3f"; locus "ERVLE_1q25.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0259"; model_cov "732"; model_pct "12.9"; chr1 rmsk exon 184258841 184259027 408 - . gene_id "ERVLE_1q25.3f"; transcript_id "ERVLE_1q25.3f"; locus "ERVLE_1q25.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0259"; repClass "LTR"; repEnd "2075"; repFamily "ERVL"; repLeft "1872"; repStart "-3592"; chr1 rmsk exon 184259204 184259708 1096 - . gene_id "ERVLE_1q25.3f"; transcript_id "ERVLE_1q25.3f"; locus "ERVLE_1q25.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0259"; repClass "LTR"; repEnd "1650"; repFamily "ERVL"; repLeft "1121"; repStart "-4017"; ### HERVL18_1q25.3 ### chr1 rmsk gene 184287074 184290618 . + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0010"; model_cov "2278"; model_pct "37.7"; chr1 rmsk exon 184287074 184287472 2068 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr1 rmsk exon 184287499 184287966 2288 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "-5560"; repStart "9"; chr1 rmsk exon 184287965 184288400 2251 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "1172"; chr1 rmsk exon 184288431 184288684 1179 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3596"; repStart "2119"; chr1 rmsk exon 184288686 184289042 1958 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2963"; repStart "2721"; chr1 rmsk exon 184289031 184289607 3388 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "3504"; repFamily "ERVL"; repLeft "-2543"; repStart "2941"; chr1 rmsk exon 184290033 184290132 473 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "6046"; repFamily "ERVL"; repLeft "-1"; repStart "5946"; chr1 rmsk exon 184290254 184290618 2166 + . gene_id "HERVL18_1q25.3"; transcript_id "HERVL18_1q25.3"; locus "HERVL18_1q25.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0010"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### MER41_1q25.3 ### chr1 rmsk gene 184811820 184812915 . + . gene_id "MER41_1q25.3"; transcript_id "MER41_1q25.3"; locus "MER41_1q25.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0029"; model_cov "1229"; model_pct "20.7"; chr1 rmsk exon 184811820 184812560 3500 + . gene_id "MER41_1q25.3"; transcript_id "MER41_1q25.3"; locus "MER41_1q25.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0029"; repClass "LTR"; repEnd "1136"; repFamily "ERV1"; repLeft "-4810"; repStart "288"; chr1 rmsk exon 184812556 184812915 2162 + . gene_id "MER41_1q25.3"; transcript_id "MER41_1q25.3"; locus "MER41_1q25.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0029"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-5166"; repStart "399"; ### ERVLE_1q25.3g ### chr1 rmsk gene 185116817 185118090 . + . gene_id "ERVLE_1q25.3g"; transcript_id "ERVLE_1q25.3g"; locus "ERVLE_1q25.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0260"; model_cov "1204"; model_pct "21.2"; chr1 rmsk exon 185116817 185116974 293 + . gene_id "ERVLE_1q25.3g"; transcript_id "ERVLE_1q25.3g"; locus "ERVLE_1q25.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0260"; repClass "LTR"; repEnd "841"; repFamily "ERVL"; repLeft "-4826"; repStart "681"; chr1 rmsk exon 185117011 185117637 1505 + . gene_id "ERVLE_1q25.3g"; transcript_id "ERVLE_1q25.3g"; locus "ERVLE_1q25.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0260"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-4092"; repStart "907"; chr1 rmsk exon 185117745 185118090 856 + . gene_id "ERVLE_1q25.3g"; transcript_id "ERVLE_1q25.3g"; locus "ERVLE_1q25.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0260"; repClass "LTR"; repEnd "2131"; repFamily "ERVL"; repLeft "-3536"; repStart "1755"; ### ERVLE_1q25.3h ### chr1 rmsk gene 185499736 185501896 . - . gene_id "ERVLE_1q25.3h"; transcript_id "ERVLE_1q25.3h"; locus "ERVLE_1q25.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0263"; model_cov "1872"; model_pct "33.0"; chr1 rmsk exon 185499736 185499998 667 - . gene_id "ERVLE_1q25.3h"; transcript_id "ERVLE_1q25.3h"; locus "ERVLE_1q25.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0263"; repClass "LTR"; repEnd "3938"; repFamily "ERVL"; repLeft "3660"; repStart "-1729"; chr1 rmsk exon 185500036 185500932 1433 - . gene_id "ERVLE_1q25.3h"; transcript_id "ERVLE_1q25.3h"; locus "ERVLE_1q25.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0263"; repClass "LTR"; repEnd "3620"; repFamily "ERVL"; repLeft "2685"; repStart "-2047"; chr1 rmsk exon 185501078 185501328 983 - . gene_id "ERVLE_1q25.3h"; transcript_id "ERVLE_1q25.3h"; locus "ERVLE_1q25.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0263"; repClass "LTR"; repEnd "2499"; repFamily "ERVL"; repLeft "2245"; repStart "-3168"; chr1 rmsk exon 185501510 185501896 882 - . gene_id "ERVLE_1q25.3h"; transcript_id "ERVLE_1q25.3h"; locus "ERVLE_1q25.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0263"; repClass "LTR"; repEnd "1960"; repFamily "ERVL"; repLeft "1555"; repStart "-3707"; ### HML5_1q25.3 ### chr1 rmsk gene 185581069 185586238 . - . gene_id "HML5_1q25.3"; transcript_id "HML5_1q25.3"; locus "HML5_1q25.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0010"; model_cov "5263"; model_pct "77.0"; chr1 rmsk exon 185581069 185581513 2090 - . gene_id "HML5_1q25.3"; transcript_id "HML5_1q25.3"; locus "HML5_1q25.3"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0010"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "7"; repStart "-30"; chr1 rmsk exon 185581525 185584696 20010 - . gene_id "HML5_1q25.3"; transcript_id "HML5_1q25.3"; locus "HML5_1q25.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0010"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2327"; repStart "0"; chr1 rmsk exon 185585007 185585756 4942 - . gene_id "HML5_1q25.3"; transcript_id "HML5_1q25.3"; locus "HML5_1q25.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0010"; repClass "LTR"; repEnd "754"; repFamily "ERVK"; repLeft "1"; repStart "-6083"; chr1 rmsk exon 185585757 185586238 2295 - . gene_id "HML5_1q25.3"; transcript_id "HML5_1q25.3"; locus "HML5_1q25.3"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0010"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_1q31.1a ### chr1 rmsk gene 185948279 185954216 . - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0067"; model_cov "4916"; model_pct "63.7"; chr1 rmsk exon 185948279 185948729 3549 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 185948730 185949109 2606 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 185949108 185949323 1446 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 185949325 185949984 4346 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 185949987 185950491 3395 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 185950482 185950631 973 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 185950611 185953761 16927 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 185953764 185954216 3531 - . gene_id "HERVH_1q31.1a"; transcript_id "HERVH_1q31.1a"; locus "HERVH_1q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0067"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_1q31.1 ### chr1 rmsk gene 186223611 186228279 . + . gene_id "MER41_1q31.1"; transcript_id "MER41_1q31.1"; locus "MER41_1q31.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0030"; model_cov "3784"; model_pct "63.6"; chr1 rmsk exon 186223611 186224240 3723 + . gene_id "MER41_1q31.1"; transcript_id "MER41_1q31.1"; locus "MER41_1q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0030"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "-5340"; repStart "1"; chr1 rmsk exon 186224285 186227756 11455 + . gene_id "MER41_1q31.1"; transcript_id "MER41_1q31.1"; locus "MER41_1q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0030"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2765"; chr1 rmsk exon 186227757 186228279 3879 + . gene_id "MER41_1q31.1"; transcript_id "MER41_1q31.1"; locus "MER41_1q31.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0030"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMAX_1q31.1a ### chr1 rmsk gene 186516009 186518615 . + . gene_id "PRIMAX_1q31.1a"; transcript_id "PRIMAX_1q31.1a"; locus "PRIMAX_1q31.1a"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0003"; model_cov "566"; model_pct "13.8"; chr1 rmsk exon 186516009 186516142 889 + . gene_id "PRIMAX_1q31.1a"; transcript_id "PRIMAX_1q31.1a"; locus "PRIMAX_1q31.1a"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0003"; repClass "LTR"; repEnd "1662"; repFamily "ERV1"; repLeft "-2440"; repStart "1593"; chr1 rmsk exon 186516449 186516804 889 + . gene_id "PRIMAX_1q31.1a"; transcript_id "PRIMAX_1q31.1a"; locus "PRIMAX_1q31.1a"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0003"; repClass "LTR"; repEnd "1937"; repFamily "ERV1"; repLeft "-2165"; repStart "1663"; chr1 rmsk exon 186518332 186518393 335 + . gene_id "PRIMAX_1q31.1a"; transcript_id "PRIMAX_1q31.1a"; locus "PRIMAX_1q31.1a"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0003"; repClass "LTR"; repEnd "3146"; repFamily "ERV1"; repLeft "-956"; repStart "3085"; chr1 rmsk exon 186518429 186518615 335 + . gene_id "PRIMAX_1q31.1a"; transcript_id "PRIMAX_1q31.1a"; locus "PRIMAX_1q31.1a"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0003"; repClass "LTR"; repEnd "3309"; repFamily "ERV1"; repLeft "-793"; repStart "3147"; ### PRIMAX_1q31.1b ### chr1 rmsk gene 186608020 186611760 . - . gene_id "PRIMAX_1q31.1b"; transcript_id "PRIMAX_1q31.1b"; locus "PRIMAX_1q31.1b"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0004"; model_cov "562"; model_pct "13.7"; chr1 rmsk exon 186608020 186608699 690 - . gene_id "PRIMAX_1q31.1b"; transcript_id "PRIMAX_1q31.1b"; locus "PRIMAX_1q31.1b"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0004"; repClass "LTR"; repEnd "1943"; repFamily "ERV1"; repLeft "1600"; repStart "-2159"; chr1 rmsk exon 186609392 186609466 263 - . gene_id "PRIMAX_1q31.1b"; transcript_id "PRIMAX_1q31.1b"; locus "PRIMAX_1q31.1b"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0004"; repClass "LTR"; repEnd "335"; repFamily "ERV1"; repLeft "261"; repStart "-3767"; chr1 rmsk exon 186610784 186610917 485 - . gene_id "PRIMAX_1q31.1b"; transcript_id "PRIMAX_1q31.1b"; locus "PRIMAX_1q31.1b"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0004"; repClass "LTR"; repEnd "-1457"; repFamily "ERV1"; repLeft "-1571"; repStart "-5559"; chr1 rmsk exon 186611729 186611760 440 - . gene_id "PRIMAX_1q31.1b"; transcript_id "PRIMAX_1q31.1b"; locus "PRIMAX_1q31.1b"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0004"; repClass "LTR"; repEnd "-1572"; repFamily "ERV1"; repLeft "-1603"; repStart "-5674"; ### HERVEA_1q31.1 ### chr1 rmsk gene 186914372 186923133 . - . gene_id "HERVEA_1q31.1"; transcript_id "HERVEA_1q31.1"; locus "HERVEA_1q31.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0007"; model_cov "7845"; model_pct "100.0"; chr1 rmsk exon 186914372 186914834 3694 - . gene_id "HERVEA_1q31.1"; transcript_id "HERVEA_1q31.1"; locus "HERVEA_1q31.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0007"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 186914837 186922674 66442 - . gene_id "HERVEA_1q31.1"; transcript_id "HERVEA_1q31.1"; locus "HERVEA_1q31.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0007"; repClass "LTR"; repEnd "7846"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr1 rmsk exon 186922675 186923133 3565 - . gene_id "HERVEA_1q31.1"; transcript_id "HERVEA_1q31.1"; locus "HERVEA_1q31.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0007"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_1q31.1 ### chr1 rmsk gene 187002870 187010252 . + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0009"; model_cov "5017"; model_pct "100.0"; chr1 rmsk exon 187002870 187003526 4860 + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0009"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 187003527 187005151 13385 + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0009"; repClass "LTR"; repEnd "1813"; repFamily "ERV1"; repLeft "-3202"; repStart "1"; chr1 rmsk exon 187005364 187005980 13385 + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0009"; repClass "LTR"; repEnd "2503"; repFamily "ERV1"; repLeft "-2512"; repStart "1814"; chr1 rmsk exon 187007107 187009596 18926 + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0009"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "2499"; chr1 rmsk exon 187009601 187010252 4937 + . gene_id "PABLA_1q31.1"; transcript_id "PABLA_1q31.1"; locus "PABLA_1q31.1"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0009"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERVLE_1q31.1a ### chr1 rmsk gene 187166788 187168794 . + . gene_id "ERVLE_1q31.1a"; transcript_id "ERVLE_1q31.1a"; locus "ERVLE_1q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0265"; model_cov "1833"; model_pct "32.3"; chr1 rmsk exon 187166788 187167198 1079 + . gene_id "ERVLE_1q31.1a"; transcript_id "ERVLE_1q31.1a"; locus "ERVLE_1q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0265"; repClass "LTR"; repEnd "2251"; repFamily "ERVL"; repLeft "-3416"; repStart "1833"; chr1 rmsk exon 187167212 187167275 1734 + . gene_id "ERVLE_1q31.1a"; transcript_id "ERVLE_1q31.1a"; locus "ERVLE_1q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0265"; repClass "LTR"; repEnd "2361"; repFamily "ERVL"; repLeft "-3306"; repStart "2289"; chr1 rmsk exon 187167553 187168794 1734 + . gene_id "ERVLE_1q31.1a"; transcript_id "ERVLE_1q31.1a"; locus "ERVLE_1q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0265"; repClass "LTR"; repEnd "3705"; repFamily "ERVL"; repLeft "-1962"; repStart "2362"; ### MER4_1q31.1 ### chr1 rmsk gene 187468808 187471048 . + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0054"; model_cov "1363"; model_pct "20.7"; chr1 rmsk exon 187468808 187468895 2696 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0054"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "-381"; repStart "1"; chr1 rmsk exon 187469207 187469563 2696 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0054"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "92"; chr1 rmsk exon 187469565 187470557 2191 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0054"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "1"; chr1 rmsk exon 187470596 187470661 2191 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0054"; repClass "LTR"; repEnd "1211"; repFamily "ERV1"; repLeft "-5387"; repStart "1112"; chr1 rmsk exon 187470656 187470811 621 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0054"; repClass "LTR"; repEnd "3550"; repFamily "ERV1"; repLeft "-3048"; repStart "3396"; chr1 rmsk exon 187470812 187471048 1561 + . gene_id "MER4_1q31.1"; transcript_id "MER4_1q31.1"; locus "MER4_1q31.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0054"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "235"; ### HERVIP10F_1q31.1 ### chr1 rmsk gene 187630702 187632130 . + . gene_id "HERVIP10F_1q31.1"; transcript_id "HERVIP10F_1q31.1"; locus "HERVIP10F_1q31.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0009"; model_cov "952"; model_pct "12.3"; chr1 rmsk exon 187630702 187631191 3125 + . gene_id "HERVIP10F_1q31.1"; transcript_id "HERVIP10F_1q31.1"; locus "HERVIP10F_1q31.1"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10F-int_0009"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 187631192 187632130 2413 + . gene_id "HERVIP10F_1q31.1"; transcript_id "HERVIP10F_1q31.1"; locus "HERVIP10F_1q31.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0009"; repClass "LTR"; repEnd "1087"; repFamily "ERV1"; repLeft "-6650"; repStart "135"; ### MER61_1q31.1a ### chr1 rmsk gene 187641124 187643633 . + . gene_id "MER61_1q31.1a"; transcript_id "MER61_1q31.1a"; locus "MER61_1q31.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0033"; model_cov "2913"; model_pct "55.8"; chr1 rmsk exon 187641124 187641443 1605 + . gene_id "MER61_1q31.1a"; transcript_id "MER61_1q31.1a"; locus "MER61_1q31.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0033"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 187641444 187642121 3182 + . gene_id "MER61_1q31.1a"; transcript_id "MER61_1q31.1a"; locus "MER61_1q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0033"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr1 rmsk exon 187642151 187643633 5526 + . gene_id "MER61_1q31.1a"; transcript_id "MER61_1q31.1a"; locus "MER61_1q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0033"; repClass "LTR"; repEnd "4064"; repFamily "ERV1"; repLeft "-1153"; repStart "1857"; ### HERVH_1q31.1b ### chr1 rmsk gene 187765509 187770901 . - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0069"; model_cov "4919"; model_pct "63.8"; chr1 rmsk exon 187765509 187765959 3378 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 187765960 187766344 2455 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7314"; repStart "0"; chr1 rmsk exon 187766337 187766557 1360 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 187766555 187767202 4090 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 187767205 187767706 3246 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 187767697 187767841 869 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 187767836 187770763 20067 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 187770764 187770901 971 - . gene_id "HERVH_1q31.1b"; transcript_id "HERVH_1q31.1b"; locus "HERVH_1q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0069"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "339"; repStart "0"; ### ERVLE_1q31.1b ### chr1 rmsk gene 187874870 187876362 . - . gene_id "ERVLE_1q31.1b"; transcript_id "ERVLE_1q31.1b"; locus "ERVLE_1q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0267"; model_cov "1132"; model_pct "20.0"; chr1 rmsk exon 187874870 187875413 711 - . gene_id "ERVLE_1q31.1b"; transcript_id "ERVLE_1q31.1b"; locus "ERVLE_1q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0267"; repClass "LTR"; repEnd "1139"; repFamily "ERVL"; repLeft "574"; repStart "-4528"; chr1 rmsk exon 187875798 187876362 711 - . gene_id "ERVLE_1q31.1b"; transcript_id "ERVLE_1q31.1b"; locus "ERVLE_1q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0267"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "6"; repStart "-5094"; ### MER101_1q31.1 ### chr1 rmsk gene 188099863 188100570 . + . gene_id "MER101_1q31.1"; transcript_id "MER101_1q31.1"; locus "MER101_1q31.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0034"; model_cov "913"; model_pct "13.8"; chr1 rmsk exon 188099863 188100570 2095 + . gene_id "MER101_1q31.1"; transcript_id "MER101_1q31.1"; locus "MER101_1q31.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0034"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-3586"; repStart "2140"; ### HERVL_1q31.1a ### chr1 rmsk gene 188335018 188342121 . - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0091"; model_cov "5649"; model_pct "99.9"; chr1 rmsk exon 188335018 188335444 2863 - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0091"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 188335447 188340645 41116 - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0091"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "425"; repStart "-2"; chr1 rmsk exon 188340945 188341367 41116 - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0091"; repClass "LTR"; repEnd "424"; repFamily "ERVL"; repLeft "2"; repStart "-5230"; chr1 rmsk exon 188341370 188341531 2763 - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0091"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "290"; repStart "-3"; chr1 rmsk exon 188341837 188342121 2763 - . gene_id "HERVL_1q31.1a"; transcript_id "HERVL_1q31.1a"; locus "HERVL_1q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0091"; repClass "LTR"; repEnd "289"; repFamily "ERVL"; repLeft "1"; repStart "-155"; ### PRIMAX_1q31.1c ### chr1 rmsk gene 188455206 188456155 . + . gene_id "PRIMAX_1q31.1c"; transcript_id "PRIMAX_1q31.1c"; locus "PRIMAX_1q31.1c"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0005"; model_cov "623"; model_pct "15.2"; chr1 rmsk exon 188455206 188455582 363 + . gene_id "PRIMAX_1q31.1c"; transcript_id "PRIMAX_1q31.1c"; locus "PRIMAX_1q31.1c"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0005"; repClass "LTR"; repEnd "2108"; repFamily "ERV1"; repLeft "-1994"; repStart "1859"; chr1 rmsk exon 188455780 188456155 299 + . gene_id "PRIMAX_1q31.1c"; transcript_id "PRIMAX_1q31.1c"; locus "PRIMAX_1q31.1c"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0005"; repClass "LTR"; repEnd "2438"; repFamily "ERV1"; repLeft "-1664"; repStart "2064"; ### HERVL_1q31.1b ### chr1 rmsk gene 188523084 188524793 . + . gene_id "HERVL_1q31.1b"; transcript_id "HERVL_1q31.1b"; locus "HERVL_1q31.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0092"; model_cov "1152"; model_pct "20.4"; chr1 rmsk exon 188523084 188524275 8284 + . gene_id "HERVL_1q31.1b"; transcript_id "HERVL_1q31.1b"; locus "HERVL_1q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0092"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4502"; chr1 rmsk exon 188524276 188524672 2641 + . gene_id "HERVL_1q31.1b"; transcript_id "HERVL_1q31.1b"; locus "HERVL_1q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0092"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr1 rmsk exon 188524741 188524793 350 + . gene_id "HERVL_1q31.1b"; transcript_id "HERVL_1q31.1b"; locus "HERVL_1q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0092"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "391"; ### HERVL_1q31.1c ### chr1 rmsk gene 188606879 188613573 . + . gene_id "HERVL_1q31.1c"; transcript_id "HERVL_1q31.1c"; locus "HERVL_1q31.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0093"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 188606879 188607300 2978 + . gene_id "HERVL_1q31.1c"; transcript_id "HERVL_1q31.1c"; locus "HERVL_1q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0093"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; chr1 rmsk exon 188607488 188608131 37684 + . gene_id "HERVL_1q31.1c"; transcript_id "HERVL_1q31.1c"; locus "HERVL_1q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0093"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "-5009"; repStart "1"; chr1 rmsk exon 188608165 188613138 37684 + . gene_id "HERVL_1q31.1c"; transcript_id "HERVL_1q31.1c"; locus "HERVL_1q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0093"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "646"; chr1 rmsk exon 188613139 188613573 2967 + . gene_id "HERVL_1q31.1c"; transcript_id "HERVL_1q31.1c"; locus "HERVL_1q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0093"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV4_1q31.1 ### chr1 rmsk gene 188665717 188670149 . + . gene_id "HERV4_1q31.1"; transcript_id "HERV4_1q31.1"; locus "HERV4_1q31.1"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0012"; model_cov "3304"; model_pct "50.5"; chr1 rmsk exon 188665717 188665828 357 + . gene_id "HERV4_1q31.1"; transcript_id "HERV4_1q31.1"; locus "HERV4_1q31.1"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0012"; repClass "LTR"; repEnd "613"; repFamily "ERV1"; repLeft "-44"; repStart "500"; chr1 rmsk exon 188666495 188668852 1363 + . gene_id "HERV4_1q31.1"; transcript_id "HERV4_1q31.1"; locus "HERV4_1q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0012"; repClass "LTR"; repEnd "3640"; repFamily "ERV1"; repLeft "-2899"; repStart "1186"; chr1 rmsk exon 188669318 188670149 1224 + . gene_id "HERV4_1q31.1"; transcript_id "HERV4_1q31.1"; locus "HERV4_1q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0012"; repClass "LTR"; repEnd "6179"; repFamily "ERV1"; repLeft "-360"; repStart "5329"; ### HERVL_1q31.1d ### chr1 rmsk gene 188729728 188732432 . - . gene_id "HERVL_1q31.1d"; transcript_id "HERVL_1q31.1d"; locus "HERVL_1q31.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0094"; model_cov "2220"; model_pct "39.3"; chr1 rmsk exon 188729728 188730183 2992 - . gene_id "HERVL_1q31.1d"; transcript_id "HERVL_1q31.1d"; locus "HERVL_1q31.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0094"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 188730184 188732432 15452 - . gene_id "HERVL_1q31.1d"; transcript_id "HERVL_1q31.1d"; locus "HERVL_1q31.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0094"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3434"; repStart "0"; ### ERV316A3_1q31.1 ### chr1 rmsk gene 188758546 188760145 . + . gene_id "ERV316A3_1q31.1"; transcript_id "ERV316A3_1q31.1"; locus "ERV316A3_1q31.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0141"; model_cov "1134"; model_pct "21.7"; chr1 rmsk exon 188758546 188758803 661 + . gene_id "ERV316A3_1q31.1"; transcript_id "ERV316A3_1q31.1"; locus "ERV316A3_1q31.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0141"; repClass "LTR"; repEnd "2980"; repFamily "ERVL"; repLeft "-2246"; repStart "2720"; chr1 rmsk exon 188759390 188759690 616 + . gene_id "ERV316A3_1q31.1"; transcript_id "ERV316A3_1q31.1"; locus "ERV316A3_1q31.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0141"; repClass "LTR"; repEnd "3943"; repFamily "ERVL"; repLeft "-1283"; repStart "3437"; chr1 rmsk exon 188759789 188760145 590 + . gene_id "ERV316A3_1q31.1"; transcript_id "ERV316A3_1q31.1"; locus "ERV316A3_1q31.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0141"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "-634"; repStart "4224"; ### ERVLE_1q31.1c ### chr1 rmsk gene 188940147 188940786 . - . gene_id "ERVLE_1q31.1c"; transcript_id "ERVLE_1q31.1c"; locus "ERVLE_1q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0268"; model_cov "613"; model_pct "10.8"; chr1 rmsk exon 188940147 188940562 860 - . gene_id "ERVLE_1q31.1c"; transcript_id "ERVLE_1q31.1c"; locus "ERVLE_1q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0268"; repClass "LTR"; repEnd "4892"; repFamily "ERVL"; repLeft "4469"; repStart "-775"; chr1 rmsk exon 188940601 188940786 463 - . gene_id "ERVLE_1q31.1c"; transcript_id "ERVLE_1q31.1c"; locus "ERVLE_1q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0268"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "4227"; repStart "-1250"; ### HERVL_1q31.1e ### chr1 rmsk gene 189167443 189174237 . + . gene_id "HERVL_1q31.1e"; transcript_id "HERVL_1q31.1e"; locus "HERVL_1q31.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0095"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 189167443 189167990 1986 + . gene_id "HERVL_1q31.1e"; transcript_id "HERVL_1q31.1e"; locus "HERVL_1q31.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0095"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "-100"; chr1 rmsk exon 189167994 189173584 39838 + . gene_id "HERVL_1q31.1e"; transcript_id "HERVL_1q31.1e"; locus "HERVL_1q31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0095"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 189173585 189173711 1766 + . gene_id "HERVL_1q31.1e"; transcript_id "HERVL_1q31.1e"; locus "HERVL_1q31.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0095"; repClass "LTR"; repEnd "127"; repFamily "ERVL"; repLeft "-326"; repStart "1"; chr1 rmsk exon 189174057 189174237 1766 + . gene_id "HERVL_1q31.1e"; transcript_id "HERVL_1q31.1e"; locus "HERVL_1q31.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0095"; repClass "LTR"; repEnd "300"; repFamily "ERVL"; repLeft "-153"; repStart "128"; ### LTR25_1q31.1 ### chr1 rmsk gene 189269130 189270998 . - . gene_id "LTR25_1q31.1"; transcript_id "LTR25_1q31.1"; locus "LTR25_1q31.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0013"; model_cov "1535"; model_pct "21.4"; chr1 rmsk exon 189269130 189269815 5097 - . gene_id "LTR25_1q31.1"; transcript_id "LTR25_1q31.1"; locus "LTR25_1q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0013"; repClass "LTR"; repEnd "1570"; repFamily "ERV1"; repLeft "906"; repStart "-5618"; chr1 rmsk exon 189270144 189270998 5097 - . gene_id "LTR25_1q31.1"; transcript_id "LTR25_1q31.1"; locus "LTR25_1q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0013"; repClass "LTR"; repEnd "905"; repFamily "ERV1"; repLeft "34"; repStart "-6283"; ### ERVLE_1q31.1d ### chr1 rmsk gene 189429879 189431426 . + . gene_id "ERVLE_1q31.1d"; transcript_id "ERVLE_1q31.1d"; locus "ERVLE_1q31.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0271"; model_cov "1336"; model_pct "23.6"; chr1 rmsk exon 189429879 189430982 2699 + . gene_id "ERVLE_1q31.1d"; transcript_id "ERVLE_1q31.1d"; locus "ERVLE_1q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0271"; repClass "LTR"; repEnd "3139"; repFamily "ERVL"; repLeft "-2528"; repStart "2069"; chr1 rmsk exon 189431161 189431426 359 + . gene_id "ERVLE_1q31.1d"; transcript_id "ERVLE_1q31.1d"; locus "ERVLE_1q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0271"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5400"; ### ERVLE_1q31.1e ### chr1 rmsk gene 189778869 189780533 . + . gene_id "ERVLE_1q31.1e"; transcript_id "ERVLE_1q31.1e"; locus "ERVLE_1q31.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0272"; model_cov "1669"; model_pct "29.5"; chr1 rmsk exon 189778869 189779047 716 + . gene_id "ERVLE_1q31.1e"; transcript_id "ERVLE_1q31.1e"; locus "ERVLE_1q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0272"; repClass "LTR"; repEnd "3204"; repFamily "ERVL"; repLeft "-2463"; repStart "3024"; chr1 rmsk exon 189779069 189780533 1951 + . gene_id "ERVLE_1q31.1e"; transcript_id "ERVLE_1q31.1e"; locus "ERVLE_1q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0272"; repClass "LTR"; repEnd "4829"; repFamily "ERVL"; repLeft "-838"; repStart "3340"; ### ERVLE_1q31.1f ### chr1 rmsk gene 189872819 189876155 . + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0274"; model_cov "1928"; model_pct "34.0"; chr1 rmsk exon 189872819 189873316 1262 + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0274"; repClass "LTR"; repEnd "1834"; repFamily "ERVL"; repLeft "-3833"; repStart "1322"; chr1 rmsk exon 189873615 189874146 963 + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0274"; repClass "LTR"; repEnd "3587"; repFamily "ERVL"; repLeft "-2080"; repStart "3012"; chr1 rmsk exon 189874783 189875294 1416 + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0274"; repClass "LTR"; repEnd "4152"; repFamily "ERVL"; repLeft "-1515"; repStart "3643"; chr1 rmsk exon 189875824 189876032 736 + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0274"; repClass "LTR"; repEnd "4370"; repFamily "ERVL"; repLeft "-1297"; repStart "4147"; chr1 rmsk exon 189876046 189876155 333 + . gene_id "ERVLE_1q31.1f"; transcript_id "ERVLE_1q31.1f"; locus "ERVLE_1q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0274"; repClass "LTR"; repEnd "4521"; repFamily "ERVL"; repLeft "-1146"; repStart "4412"; ### ERVLE_1q31.1g ### chr1 rmsk gene 189876676 189877546 . + . gene_id "ERVLE_1q31.1g"; transcript_id "ERVLE_1q31.1g"; locus "ERVLE_1q31.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0275"; model_cov "779"; model_pct "13.7"; chr1 rmsk exon 189876676 189876721 261 + . gene_id "ERVLE_1q31.1g"; transcript_id "ERVLE_1q31.1g"; locus "ERVLE_1q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0275"; repClass "LTR"; repEnd "4171"; repFamily "ERVL"; repLeft "-1496"; repStart "4126"; chr1 rmsk exon 189876829 189877546 1175 + . gene_id "ERVLE_1q31.1g"; transcript_id "ERVLE_1q31.1g"; locus "ERVLE_1q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0275"; repClass "LTR"; repEnd "4947"; repFamily "ERVL"; repLeft "-720"; repStart "4213"; ### MER61_1q31.1b ### chr1 rmsk gene 190083768 190085109 . + . gene_id "MER61_1q31.1b"; transcript_id "MER61_1q31.1b"; locus "MER61_1q31.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0034"; model_cov "774"; model_pct "14.8"; chr1 rmsk exon 190083768 190084158 4691 + . gene_id "MER61_1q31.1b"; transcript_id "MER61_1q31.1b"; locus "MER61_1q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0034"; repClass "LTR"; repEnd "4837"; repFamily "ERV1"; repLeft "-380"; repStart "4441"; chr1 rmsk exon 190084445 190084806 4691 + . gene_id "MER61_1q31.1b"; transcript_id "MER61_1q31.1b"; locus "MER61_1q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0034"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4838"; chr1 rmsk exon 190084808 190085109 1313 + . gene_id "MER61_1q31.1b"; transcript_id "MER61_1q31.1b"; locus "MER61_1q31.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0034"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_1q31.1 ### chr1 rmsk gene 190593261 190594244 . + . gene_id "LTR57_1q31.1"; transcript_id "LTR57_1q31.1"; locus "LTR57_1q31.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0014"; model_cov "986"; model_pct "18.5"; chr1 rmsk exon 190593261 190594244 4148 + . gene_id "LTR57_1q31.1"; transcript_id "LTR57_1q31.1"; locus "LTR57_1q31.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0014"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "-3749"; repStart "608"; ### HERVL_1q31.1f ### chr1 rmsk gene 190669150 190675533 . - . gene_id "HERVL_1q31.1f"; transcript_id "HERVL_1q31.1f"; locus "HERVL_1q31.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0096"; model_cov "5652"; model_pct "100.0"; chr1 rmsk exon 190669150 190669588 3133 - . gene_id "HERVL_1q31.1f"; transcript_id "HERVL_1q31.1f"; locus "HERVL_1q31.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0096"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr1 rmsk exon 190669590 190675094 38236 - . gene_id "HERVL_1q31.1f"; transcript_id "HERVL_1q31.1f"; locus "HERVL_1q31.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0096"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr1 rmsk exon 190675096 190675533 3016 - . gene_id "HERVL_1q31.1f"; transcript_id "HERVL_1q31.1f"; locus "HERVL_1q31.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0096"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### MER4B_1q31.2 ### chr1 rmsk gene 191152465 191155164 . + . gene_id "MER4B_1q31.2"; transcript_id "MER4B_1q31.2"; locus "MER4B_1q31.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0037"; model_cov "4101"; model_pct "60.7"; chr1 rmsk exon 191152465 191155164 6957 + . gene_id "MER4B_1q31.2"; transcript_id "MER4B_1q31.2"; locus "MER4B_1q31.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0037"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "-2377"; repStart "280"; ### MER4_1q31.2 ### chr1 rmsk gene 191155338 191156075 . + . gene_id "MER4_1q31.2"; transcript_id "MER4_1q31.2"; locus "MER4_1q31.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0057"; model_cov "1003"; model_pct "15.2"; chr1 rmsk exon 191155338 191156075 2878 + . gene_id "MER4_1q31.2"; transcript_id "MER4_1q31.2"; locus "MER4_1q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0057"; repClass "LTR"; repEnd "4860"; repFamily "ERV1"; repLeft "-1738"; repStart "3857"; ### HERVL_1q31.2a ### chr1 rmsk gene 191234151 191240770 . + . gene_id "HERVL_1q31.2a"; transcript_id "HERVL_1q31.2a"; locus "HERVL_1q31.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0097"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 191234151 191234553 2642 + . gene_id "HERVL_1q31.2a"; transcript_id "HERVL_1q31.2a"; locus "HERVL_1q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0097"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-53"; repStart "-102"; chr1 rmsk exon 191234763 191240322 24727 + . gene_id "HERVL_1q31.2a"; transcript_id "HERVL_1q31.2a"; locus "HERVL_1q31.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0097"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 191240323 191240707 2768 + . gene_id "HERVL_1q31.2a"; transcript_id "HERVL_1q31.2a"; locus "HERVL_1q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0097"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-42"; repStart "1"; chr1 rmsk exon 191240733 191240770 2768 + . gene_id "HERVL_1q31.2a"; transcript_id "HERVL_1q31.2a"; locus "HERVL_1q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0097"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "403"; ### HERVL_1q31.2b ### chr1 rmsk gene 191825119 191828989 . - . gene_id "HERVL_1q31.2b"; transcript_id "HERVL_1q31.2b"; locus "HERVL_1q31.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0100"; model_cov "1845"; model_pct "32.6"; chr1 rmsk exon 191825119 191825500 2814 - . gene_id "HERVL_1q31.2b"; transcript_id "HERVL_1q31.2b"; locus "HERVL_1q31.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0100"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; chr1 rmsk exon 191825501 191827041 11314 - . gene_id "HERVL_1q31.2b"; transcript_id "HERVL_1q31.2b"; locus "HERVL_1q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0100"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4122"; repStart "0"; chr1 rmsk exon 191828095 191828404 2337 - . gene_id "HERVL_1q31.2b"; transcript_id "HERVL_1q31.2b"; locus "HERVL_1q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0100"; repClass "LTR"; repEnd "317"; repFamily "ERVL"; repLeft "4"; repStart "-5337"; chr1 rmsk exon 191828587 191828989 2997 - . gene_id "HERVL_1q31.2b"; transcript_id "HERVL_1q31.2b"; locus "HERVL_1q31.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0100"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERV316A3_1q31.2a ### chr1 rmsk gene 192224564 192227876 . + . gene_id "ERV316A3_1q31.2a"; transcript_id "ERV316A3_1q31.2a"; locus "ERV316A3_1q31.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0142"; model_cov "2315"; model_pct "44.3"; chr1 rmsk exon 192224564 192224974 777 + . gene_id "ERV316A3_1q31.2a"; transcript_id "ERV316A3_1q31.2a"; locus "ERV316A3_1q31.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0142"; repClass "LTR"; repEnd "2038"; repFamily "ERVL"; repLeft "-3188"; repStart "1581"; chr1 rmsk exon 192225433 192227353 1482 + . gene_id "ERV316A3_1q31.2a"; transcript_id "ERV316A3_1q31.2a"; locus "ERV316A3_1q31.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0142"; repClass "LTR"; repEnd "5067"; repFamily "ERVL"; repLeft "-159"; repStart "3209"; chr1 rmsk exon 192227646 192227876 423 + . gene_id "ERV316A3_1q31.2a"; transcript_id "ERV316A3_1q31.2a"; locus "ERV316A3_1q31.2a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0142"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-98"; repStart "146"; ### ERV316A3_1q31.2b ### chr1 rmsk gene 192237925 192238996 . + . gene_id "ERV316A3_1q31.2b"; transcript_id "ERV316A3_1q31.2b"; locus "ERV316A3_1q31.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0143"; model_cov "520"; model_pct "10.0"; chr1 rmsk exon 192237925 192238437 1290 + . gene_id "ERV316A3_1q31.2b"; transcript_id "ERV316A3_1q31.2b"; locus "ERV316A3_1q31.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0143"; repClass "LTR"; repEnd "5062"; repFamily "ERVL"; repLeft "-164"; repStart "4542"; chr1 rmsk exon 192238563 192238996 1203 + . gene_id "ERV316A3_1q31.2b"; transcript_id "ERV316A3_1q31.2b"; locus "ERV316A3_1q31.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0143"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_1q31.2 ### chr1 rmsk gene 192978517 192980540 . - . gene_id "HERVH_1q31.2"; transcript_id "HERVH_1q31.2"; locus "HERVH_1q31.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0070"; model_cov "2310"; model_pct "29.9"; chr1 rmsk exon 192978517 192978690 1234 - . gene_id "HERVH_1q31.2"; transcript_id "HERVH_1q31.2"; locus "HERVH_1q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0070"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "278"; repStart "0"; chr1 rmsk exon 192978691 192979663 5499 - . gene_id "HERVH_1q31.2"; transcript_id "HERVH_1q31.2"; locus "HERVH_1q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0070"; repClass "LTR"; repEnd "3689"; repFamily "ERV1"; repLeft "1837"; repStart "-4024"; chr1 rmsk exon 192979689 192980175 2281 - . gene_id "HERVH_1q31.2"; transcript_id "HERVH_1q31.2"; locus "HERVH_1q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0070"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr1 rmsk exon 192980176 192980540 2222 - . gene_id "HERVH_1q31.2"; transcript_id "HERVH_1q31.2"; locus "HERVH_1q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0070"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_1q31.2c ### chr1 rmsk gene 193375087 193382172 . - . gene_id "HERVL_1q31.2c"; transcript_id "HERVL_1q31.2c"; locus "HERVL_1q31.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0101"; model_cov "4500"; model_pct "79.6"; chr1 rmsk exon 193375087 193375635 1927 - . gene_id "HERVL_1q31.2c"; transcript_id "HERVL_1q31.2c"; locus "HERVL_1q31.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0101"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr1 rmsk exon 193375636 193377295 11571 - . gene_id "HERVL_1q31.2c"; transcript_id "HERVL_1q31.2c"; locus "HERVL_1q31.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0101"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3945"; repStart "0"; chr1 rmsk exon 193379150 193381372 17467 - . gene_id "HERVL_1q31.2c"; transcript_id "HERVL_1q31.2c"; locus "HERVL_1q31.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0101"; repClass "LTR"; repEnd "3918"; repFamily "ERVL"; repLeft "1644"; repStart "-1736"; chr1 rmsk exon 193381649 193382172 17467 - . gene_id "HERVL_1q31.2c"; transcript_id "HERVL_1q31.2c"; locus "HERVL_1q31.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0101"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "1126"; repStart "-4011"; ### HERVL_1q31.2d ### chr1 rmsk gene 193382237 193383945 . - . gene_id "HERVL_1q31.2d"; transcript_id "HERVL_1q31.2d"; locus "HERVL_1q31.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0102"; model_cov "1124"; model_pct "19.9"; chr1 rmsk exon 193382237 193383372 17467 - . gene_id "HERVL_1q31.2d"; transcript_id "HERVL_1q31.2d"; locus "HERVL_1q31.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0102"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "519"; repStart "-4011"; chr1 rmsk exon 193383373 193383945 1981 - . gene_id "HERVL_1q31.2d"; transcript_id "HERVL_1q31.2d"; locus "HERVL_1q31.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0102"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERVLB4_1q31.2 ### chr1 rmsk gene 193439010 193444016 . + . gene_id "ERVLB4_1q31.2"; transcript_id "ERVLB4_1q31.2"; locus "ERVLB4_1q31.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0105"; model_cov "2162"; model_pct "37.8"; chr1 rmsk exon 193439010 193439402 1620 + . gene_id "ERVLB4_1q31.2"; transcript_id "ERVLB4_1q31.2"; locus "ERVLB4_1q31.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0105"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 193439406 193440858 7539 + . gene_id "ERVLB4_1q31.2"; transcript_id "ERVLB4_1q31.2"; locus "ERVLB4_1q31.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0105"; repClass "LTR"; repEnd "1470"; repFamily "ERVL"; repLeft "-4244"; repStart "4"; chr1 rmsk exon 193443318 193444016 3859 + . gene_id "ERVLB4_1q31.2"; transcript_id "ERVLB4_1q31.2"; locus "ERVLB4_1q31.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0105"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "-3548"; repStart "1470"; ### ERV316A3_1q31.3a ### chr1 rmsk gene 194296403 194298175 . - . gene_id "ERV316A3_1q31.3a"; transcript_id "ERV316A3_1q31.3a"; locus "ERV316A3_1q31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0146"; model_cov "1481"; model_pct "28.3"; chr1 rmsk exon 194296403 194297844 3952 - . gene_id "ERV316A3_1q31.3a"; transcript_id "ERV316A3_1q31.3a"; locus "ERV316A3_1q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0146"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "3462"; repStart "-283"; chr1 rmsk exon 194297988 194298175 761 - . gene_id "ERV316A3_1q31.3a"; transcript_id "ERV316A3_1q31.3a"; locus "ERV316A3_1q31.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0146"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "137"; repStart "-134"; ### ERVL_1q31.3 ### chr1 rmsk gene 194469197 194469879 . - . gene_id "ERVL_1q31.3"; transcript_id "ERVL_1q31.3"; locus "ERVL_1q31.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0021"; model_cov "691"; model_pct "12.0"; chr1 rmsk exon 194469197 194469485 529 - . gene_id "ERVL_1q31.3"; transcript_id "ERVL_1q31.3"; locus "ERVL_1q31.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0021"; repClass "LTR"; repEnd "3635"; repFamily "ERVL"; repLeft "3342"; repStart "-2122"; chr1 rmsk exon 194469504 194469879 506 - . gene_id "ERVL_1q31.3"; transcript_id "ERVL_1q31.3"; locus "ERVL_1q31.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0021"; repClass "LTR"; repEnd "2824"; repFamily "ERVL"; repLeft "2426"; repStart "-2933"; ### ERVLE_1q31.3a ### chr1 rmsk gene 194621196 194622866 . - . gene_id "ERVLE_1q31.3a"; transcript_id "ERVLE_1q31.3a"; locus "ERVLE_1q31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0278"; model_cov "1577"; model_pct "27.8"; chr1 rmsk exon 194621196 194621823 1498 - . gene_id "ERVLE_1q31.3a"; transcript_id "ERVLE_1q31.3a"; locus "ERVLE_1q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0278"; repClass "LTR"; repEnd "3758"; repFamily "ERVL"; repLeft "3079"; repStart "-1909"; chr1 rmsk exon 194622006 194622866 1340 - . gene_id "ERVLE_1q31.3a"; transcript_id "ERVLE_1q31.3a"; locus "ERVLE_1q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0278"; repClass "LTR"; repEnd "1319"; repFamily "ERVL"; repLeft "421"; repStart "-4348"; ### ERVLE_1q31.3b ### chr1 rmsk gene 194739850 194741059 . + . gene_id "ERVLE_1q31.3b"; transcript_id "ERVLE_1q31.3b"; locus "ERVLE_1q31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0279"; model_cov "868"; model_pct "15.3"; chr1 rmsk exon 194739850 194740204 537 + . gene_id "ERVLE_1q31.3b"; transcript_id "ERVLE_1q31.3b"; locus "ERVLE_1q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0279"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "-2801"; repStart "2499"; chr1 rmsk exon 194740335 194740517 302 + . gene_id "ERVLE_1q31.3b"; transcript_id "ERVLE_1q31.3b"; locus "ERVLE_1q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0279"; repClass "LTR"; repEnd "3247"; repFamily "ERVL"; repLeft "-2420"; repStart "3058"; chr1 rmsk exon 194740745 194741059 596 + . gene_id "ERVLE_1q31.3b"; transcript_id "ERVLE_1q31.3b"; locus "ERVLE_1q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0279"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "-1603"; repStart "3752"; ### HERVL_1q31.3a ### chr1 rmsk gene 194762056 194766280 . - . gene_id "HERVL_1q31.3a"; transcript_id "HERVL_1q31.3a"; locus "HERVL_1q31.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0104"; model_cov "3783"; model_pct "66.9"; chr1 rmsk exon 194762056 194762838 5612 - . gene_id "HERVL_1q31.3a"; transcript_id "HERVL_1q31.3a"; locus "HERVL_1q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0104"; repClass "LTR"; repEnd "5229"; repFamily "ERVL"; repLeft "4448"; repStart "-425"; chr1 rmsk exon 194762837 194765822 21696 - . gene_id "HERVL_1q31.3a"; transcript_id "HERVL_1q31.3a"; locus "HERVL_1q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0104"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "3"; repStart "-2649"; chr1 rmsk exon 194765827 194766280 3020 - . gene_id "HERVL_1q31.3a"; transcript_id "HERVL_1q31.3a"; locus "HERVL_1q31.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0104"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_1q31.3b ### chr1 rmsk gene 194841597 194843308 . + . gene_id "ERV316A3_1q31.3b"; transcript_id "ERV316A3_1q31.3b"; locus "ERV316A3_1q31.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0147"; model_cov "1354"; model_pct "25.9"; chr1 rmsk exon 194841597 194841928 708 + . gene_id "ERV316A3_1q31.3b"; transcript_id "ERV316A3_1q31.3b"; locus "ERV316A3_1q31.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0147"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-108"; repStart "1"; chr1 rmsk exon 194841954 194842494 1115 + . gene_id "ERV316A3_1q31.3b"; transcript_id "ERV316A3_1q31.3b"; locus "ERV316A3_1q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0147"; repClass "LTR"; repEnd "798"; repFamily "ERVL"; repLeft "-4428"; repStart "269"; chr1 rmsk exon 194842516 194843308 1801 + . gene_id "ERV316A3_1q31.3b"; transcript_id "ERV316A3_1q31.3b"; locus "ERV316A3_1q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0147"; repClass "LTR"; repEnd "1545"; repFamily "ERVL"; repLeft "-3681"; repStart "720"; ### HERVL_1q31.3b ### chr1 rmsk gene 194920808 194926747 . + . gene_id "HERVL_1q31.3b"; transcript_id "HERVL_1q31.3b"; locus "HERVL_1q31.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0105"; model_cov "5501"; model_pct "97.3"; chr1 rmsk exon 194920808 194921256 2442 + . gene_id "HERVL_1q31.3b"; transcript_id "HERVL_1q31.3b"; locus "HERVL_1q31.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0105"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 194921258 194926005 22308 + . gene_id "HERVL_1q31.3b"; transcript_id "HERVL_1q31.3b"; locus "HERVL_1q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0105"; repClass "LTR"; repEnd "5072"; repFamily "ERVL"; repLeft "-582"; repStart "2"; chr1 rmsk exon 194926302 194926747 22308 + . gene_id "HERVL_1q31.3b"; transcript_id "HERVL_1q31.3b"; locus "HERVL_1q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0105"; repClass "LTR"; repEnd "5504"; repFamily "ERVL"; repLeft "-150"; repStart "5073"; ### ERVLE_1q31.3c ### chr1 rmsk gene 195002756 195006066 . - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0283"; model_cov "1827"; model_pct "32.2"; chr1 rmsk exon 195002756 195003342 897 - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0283"; repClass "LTR"; repEnd "662"; repFamily "ERVL"; repLeft "52"; repStart "-1"; chr1 rmsk exon 195003351 195003877 1479 - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0283"; repClass "LTR"; repEnd "5579"; repFamily "ERVL"; repLeft "5039"; repStart "-88"; chr1 rmsk exon 195004512 195005640 2708 - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0283"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "3838"; repStart "-644"; chr1 rmsk exon 195005653 195005750 518 - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0283"; repClass "LTR"; repEnd "3788"; repFamily "ERVL"; repLeft "3686"; repStart "-1879"; chr1 rmsk exon 195005751 195006066 796 - . gene_id "ERVLE_1q31.3c"; transcript_id "ERVLE_1q31.3c"; locus "ERVLE_1q31.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0283"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "27"; repStart "-312"; ### ERVLE_1q31.3d ### chr1 rmsk gene 195125248 195126556 . - . gene_id "ERVLE_1q31.3d"; transcript_id "ERVLE_1q31.3d"; locus "ERVLE_1q31.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0285"; model_cov "1367"; model_pct "24.1"; chr1 rmsk exon 195125248 195126556 1580 - . gene_id "ERVLE_1q31.3d"; transcript_id "ERVLE_1q31.3d"; locus "ERVLE_1q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0285"; repClass "LTR"; repEnd "1651"; repFamily "ERVL"; repLeft "284"; repStart "-4016"; ### ERVLE_1q31.3e ### chr1 rmsk gene 195215097 195215763 . + . gene_id "ERVLE_1q31.3e"; transcript_id "ERVLE_1q31.3e"; locus "ERVLE_1q31.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0286"; model_cov "667"; model_pct "11.8"; chr1 rmsk exon 195215097 195215552 697 + . gene_id "ERVLE_1q31.3e"; transcript_id "ERVLE_1q31.3e"; locus "ERVLE_1q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0286"; repClass "LTR"; repEnd "583"; repFamily "ERVL"; repLeft "-5084"; repStart "104"; chr1 rmsk exon 195215568 195215763 398 + . gene_id "ERVLE_1q31.3e"; transcript_id "ERVLE_1q31.3e"; locus "ERVLE_1q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0286"; repClass "LTR"; repEnd "5622"; repFamily "ERVL"; repLeft "-45"; repStart "5434"; ### ERVLB4_1q31.3a ### chr1 rmsk gene 195250239 195253558 . + . gene_id "ERVLB4_1q31.3a"; transcript_id "ERVLB4_1q31.3a"; locus "ERVLB4_1q31.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0107"; model_cov "2537"; model_pct "44.4"; chr1 rmsk exon 195250239 195251487 5935 + . gene_id "ERVLB4_1q31.3a"; transcript_id "ERVLB4_1q31.3a"; locus "ERVLB4_1q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0107"; repClass "LTR"; repEnd "4336"; repFamily "ERVL"; repLeft "-1378"; repStart "3102"; chr1 rmsk exon 195251797 195252057 5935 + . gene_id "ERVLB4_1q31.3a"; transcript_id "ERVLB4_1q31.3a"; locus "ERVLB4_1q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0107"; repClass "LTR"; repEnd "4629"; repFamily "ERVL"; repLeft "-1085"; repStart "4337"; chr1 rmsk exon 195252446 195253440 1903 + . gene_id "ERVLB4_1q31.3a"; transcript_id "ERVLB4_1q31.3a"; locus "ERVLB4_1q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0107"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4701"; chr1 rmsk exon 195253442 195253558 396 + . gene_id "ERVLB4_1q31.3a"; transcript_id "ERVLB4_1q31.3a"; locus "ERVLB4_1q31.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0107"; repClass "LTR"; repEnd "117"; repFamily "ERVL"; repLeft "-546"; repStart "1"; ### ERV316A3_1q31.3c ### chr1 rmsk gene 195399313 195401185 . + . gene_id "ERV316A3_1q31.3c"; transcript_id "ERV316A3_1q31.3c"; locus "ERV316A3_1q31.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0148"; model_cov "1902"; model_pct "36.4"; chr1 rmsk exon 195399313 195401185 3293 + . gene_id "ERV316A3_1q31.3c"; transcript_id "ERV316A3_1q31.3c"; locus "ERV316A3_1q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0148"; repClass "LTR"; repEnd "2564"; repFamily "ERVL"; repLeft "-2662"; repStart "662"; ### ERVLE_1q31.3f ### chr1 rmsk gene 195417807 195419541 . - . gene_id "ERVLE_1q31.3f"; transcript_id "ERVLE_1q31.3f"; locus "ERVLE_1q31.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0287"; model_cov "580"; model_pct "10.2"; chr1 rmsk exon 195417807 195418063 363 - . gene_id "ERVLE_1q31.3f"; transcript_id "ERVLE_1q31.3f"; locus "ERVLE_1q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0287"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "4878"; repStart "-525"; chr1 rmsk exon 195419235 195419541 400 - . gene_id "ERVLE_1q31.3f"; transcript_id "ERVLE_1q31.3f"; locus "ERVLE_1q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0287"; repClass "LTR"; repEnd "1827"; repFamily "ERVL"; repLeft "1511"; repStart "-3840"; ### MER61_1q31.3 ### chr1 rmsk gene 195481270 195486306 . - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0035"; model_cov "4007"; model_pct "76.8"; chr1 rmsk exon 195481270 195481604 1839 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0035"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 195481605 195483162 23026 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0035"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3607"; repStart "0"; chr1 rmsk exon 195483470 195485414 23026 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0035"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "-664"; repStart "-3795"; chr1 rmsk exon 195485413 195485716 873 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0035"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "1"; repStart "-4905"; chr1 rmsk exon 195485717 195485854 1634 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0035"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "213"; repStart "0"; chr1 rmsk exon 195486088 195486306 1634 - . gene_id "MER61_1q31.3"; transcript_id "MER61_1q31.3"; locus "MER61_1q31.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0035"; repClass "LTR"; repEnd "212"; repFamily "ERV1"; repLeft "1"; repStart "-129"; ### ERV316A3_1q31.3d ### chr1 rmsk gene 195659613 195660588 . - . gene_id "ERV316A3_1q31.3d"; transcript_id "ERV316A3_1q31.3d"; locus "ERV316A3_1q31.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0149"; model_cov "1036"; model_pct "19.8"; chr1 rmsk exon 195659613 195660588 962 - . gene_id "ERV316A3_1q31.3d"; transcript_id "ERV316A3_1q31.3d"; locus "ERV316A3_1q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0149"; repClass "LTR"; repEnd "4456"; repFamily "ERVL"; repLeft "3420"; repStart "-770"; ### HERVFRD_1q31.3 ### chr1 rmsk gene 195732186 195739152 . + . gene_id "HERVFRD_1q31.3"; transcript_id "HERVFRD_1q31.3"; locus "HERVFRD_1q31.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0017"; model_cov "6260"; model_pct "86.9"; chr1 rmsk exon 195732186 195732931 3915 + . gene_id "HERVFRD_1q31.3"; transcript_id "HERVFRD_1q31.3"; locus "HERVFRD_1q31.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0017"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 195732932 195734656 6117 + . gene_id "HERVFRD_1q31.3"; transcript_id "HERVFRD_1q31.3"; locus "HERVFRD_1q31.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0017"; repClass "LTR"; repEnd "1848"; repFamily "ERV1"; repLeft "-5357"; repStart "1"; chr1 rmsk exon 195734654 195738435 16128 + . gene_id "HERVFRD_1q31.3"; transcript_id "HERVFRD_1q31.3"; locus "HERVFRD_1q31.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0017"; repClass "LTR"; repEnd "7202"; repFamily "ERV1"; repLeft "-3"; repStart "2789"; chr1 rmsk exon 195738438 195739152 3680 + . gene_id "HERVFRD_1q31.3"; transcript_id "HERVFRD_1q31.3"; locus "HERVFRD_1q31.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0017"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "8"; ### HERVL_1q31.3c ### chr1 rmsk gene 195998347 196002028 . + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0108"; model_cov "3063"; model_pct "54.2"; chr1 rmsk exon 195998347 195998870 2117 + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0108"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 195998871 195999097 1598 + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0108"; repClass "LTR"; repEnd "227"; repFamily "ERVL"; repLeft "-5427"; repStart "1"; chr1 rmsk exon 195999092 196000000 4820 + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0108"; repClass "LTR"; repEnd "3934"; repFamily "ERVL"; repLeft "-1720"; repStart "2816"; chr1 rmsk exon 196000001 196001737 12628 + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0108"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3935"; chr1 rmsk exon 196001738 196002028 1915 + . gene_id "HERVL_1q31.3c"; transcript_id "HERVL_1q31.3c"; locus "HERVL_1q31.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0108"; repClass "LTR"; repEnd "294"; repFamily "ERVL"; repLeft "-159"; repStart "1"; ### ERVLB4_1q31.3b ### chr1 rmsk gene 196030125 196033045 . - . gene_id "ERVLB4_1q31.3b"; transcript_id "ERVLB4_1q31.3b"; locus "ERVLB4_1q31.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0109"; model_cov "2546"; model_pct "44.6"; chr1 rmsk exon 196030125 196030595 1635 - . gene_id "ERVLB4_1q31.3b"; transcript_id "ERVLB4_1q31.3b"; locus "ERVLB4_1q31.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0109"; repClass "LTR"; repEnd "535"; repFamily "ERVL"; repLeft "15"; repStart "-128"; chr1 rmsk exon 196030596 196031862 4641 - . gene_id "ERVLB4_1q31.3b"; transcript_id "ERVLB4_1q31.3b"; locus "ERVLB4_1q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0109"; repClass "LTR"; repEnd "5703"; repFamily "ERVL"; repLeft "4388"; repStart "-11"; chr1 rmsk exon 196031853 196033045 4852 - . gene_id "ERVLB4_1q31.3b"; transcript_id "ERVLB4_1q31.3b"; locus "ERVLB4_1q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0109"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "2994"; repStart "-1489"; ### HUERSP3B_1q31.3 ### chr1 rmsk gene 196139221 196141249 . - . gene_id "HUERSP3B_1q31.3"; transcript_id "HUERSP3B_1q31.3"; locus "HUERSP3B_1q31.3"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0011"; model_cov "1873"; model_pct "25.2"; chr1 rmsk exon 196139221 196139395 1171 - . gene_id "HUERSP3B_1q31.3"; transcript_id "HUERSP3B_1q31.3"; locus "HUERSP3B_1q31.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0011"; repClass "LTR"; repEnd "187"; repFamily "ERV1"; repLeft "1"; repStart "-457"; chr1 rmsk exon 196139398 196141249 13105 - . gene_id "HUERSP3B_1q31.3"; transcript_id "HUERSP3B_1q31.3"; locus "HUERSP3B_1q31.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0011"; repClass "LTR"; repEnd "7409"; repFamily "ERV1"; repLeft "5536"; repStart "-9"; ### HERVL_1q31.3d ### chr1 rmsk gene 196162667 196164703 . + . gene_id "HERVL_1q31.3d"; transcript_id "HERVL_1q31.3d"; locus "HERVL_1q31.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0109"; model_cov "1787"; model_pct "31.6"; chr1 rmsk exon 196162667 196162726 452 + . gene_id "HERVL_1q31.3d"; transcript_id "HERVL_1q31.3d"; locus "HERVL_1q31.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0109"; repClass "LTR"; repEnd "60"; repFamily "ERVL"; repLeft "-384"; repStart "1"; chr1 rmsk exon 196162727 196164251 9002 + . gene_id "HERVL_1q31.3d"; transcript_id "HERVL_1q31.3d"; locus "HERVL_1q31.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0109"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3867"; chr1 rmsk exon 196164252 196164703 3317 + . gene_id "HERVL_1q31.3d"; transcript_id "HERVL_1q31.3d"; locus "HERVL_1q31.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0109"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_1q31.3 ### chr1 rmsk gene 196535611 196538758 . - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0012"; model_cov "2513"; model_pct "41.6"; chr1 rmsk exon 196535611 196535984 1798 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 196535986 196536087 509 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5946"; repStart "0"; chr1 rmsk exon 196536088 196536145 285 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "5209"; repStart "-780"; chr1 rmsk exon 196536146 196536238 513 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr1 rmsk exon 196536243 196536813 2076 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "2947"; repStart "-2470"; chr1 rmsk exon 196536805 196537175 2208 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "2718"; repStart "-2959"; chr1 rmsk exon 196537173 196537429 1120 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr1 rmsk exon 196537429 196537463 276 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1776"; repStart "-4237"; chr1 rmsk exon 196537462 196537904 1979 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "1165"; repStart "-4433"; chr1 rmsk exon 196537894 196538347 2156 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "10"; repStart "-5593"; chr1 rmsk exon 196538363 196538758 1945 - . gene_id "HERVL18_1q31.3"; transcript_id "HERVL18_1q31.3"; locus "HERVL18_1q31.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0012"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### PABLB_1q31.3a ### chr1 rmsk gene 196702571 196707633 . + . gene_id "PABLB_1q31.3a"; transcript_id "PABLB_1q31.3a"; locus "PABLB_1q31.3a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0005"; model_cov "5733"; model_pct "80.5"; chr1 rmsk exon 196702571 196703092 643 + . gene_id "PABLB_1q31.3a"; transcript_id "PABLB_1q31.3a"; locus "PABLB_1q31.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0005"; repClass "LTR"; repEnd "1705"; repFamily "ERV1"; repLeft "-5417"; repStart "1183"; chr1 rmsk exon 196704543 196707633 1772 + . gene_id "PABLB_1q31.3a"; transcript_id "PABLB_1q31.3a"; locus "PABLB_1q31.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0005"; repClass "LTR"; repEnd "6606"; repFamily "ERV1"; repLeft "-516"; repStart "1395"; ### HUERSP1_1q31.3 ### chr1 rmsk gene 196867358 196868407 . + . gene_id "HUERSP1_1q31.3"; transcript_id "HUERSP1_1q31.3"; locus "HUERSP1_1q31.3"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0015"; model_cov "720"; model_pct "11.5"; chr1 rmsk exon 196867358 196867906 1476 + . gene_id "HUERSP1_1q31.3"; transcript_id "HUERSP1_1q31.3"; locus "HUERSP1_1q31.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0015"; repClass "LTR"; repEnd "1007"; repFamily "ERV1"; repLeft "-5256"; repStart "462"; chr1 rmsk exon 196868157 196868407 394 + . gene_id "HUERSP1_1q31.3"; transcript_id "HUERSP1_1q31.3"; locus "HUERSP1_1q31.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0015"; repClass "LTR"; repEnd "1196"; repFamily "ERV1"; repLeft "-5067"; repStart "1021"; ### PABLB_1q31.3b ### chr1 rmsk gene 196869192 196873668 . + . gene_id "PABLB_1q31.3b"; transcript_id "PABLB_1q31.3b"; locus "PABLB_1q31.3b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0006"; model_cov "5475"; model_pct "76.9"; chr1 rmsk exon 196869192 196869712 533 + . gene_id "PABLB_1q31.3b"; transcript_id "PABLB_1q31.3b"; locus "PABLB_1q31.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0006"; repClass "LTR"; repEnd "1705"; repFamily "ERV1"; repLeft "-5417"; repStart "1183"; chr1 rmsk exon 196870846 196873668 1683 + . gene_id "PABLB_1q31.3b"; transcript_id "PABLB_1q31.3b"; locus "PABLB_1q31.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0006"; repClass "LTR"; repEnd "6606"; repFamily "ERV1"; repLeft "-516"; repStart "1653"; ### MER4B_1q31.3 ### chr1 rmsk gene 197012984 197015240 . + . gene_id "MER4B_1q31.3"; transcript_id "MER4B_1q31.3"; locus "MER4B_1q31.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0040"; model_cov "1742"; model_pct "25.8"; chr1 rmsk exon 197012984 197014279 4520 + . gene_id "MER4B_1q31.3"; transcript_id "MER4B_1q31.3"; locus "MER4B_1q31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0040"; repClass "LTR"; repEnd "5466"; repFamily "ERV1"; repLeft "-1292"; repStart "4410"; chr1 rmsk exon 197014563 197015240 4043 + . gene_id "MER4B_1q31.3"; transcript_id "MER4B_1q31.3"; locus "MER4B_1q31.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0040"; repClass "LTR"; repEnd "6061"; repFamily "ERV1"; repLeft "-697"; repStart "5375"; ### ERVLE_1q31.3g ### chr1 rmsk gene 197148583 197153401 . + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0292"; model_cov "3535"; model_pct "62.4"; chr1 rmsk exon 197148583 197148770 926 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "1109"; repFamily "ERVL"; repLeft "-4558"; repStart "926"; chr1 rmsk exon 197148895 197149770 926 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "2046"; repFamily "ERVL"; repLeft "-3621"; repStart "1063"; chr1 rmsk exon 197149761 197149897 396 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "2187"; repFamily "ERVL"; repLeft "-3480"; repStart "2043"; chr1 rmsk exon 197149923 197150354 1164 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "-2952"; repStart "2267"; chr1 rmsk exon 197150863 197151362 3121 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "-2329"; repStart "2832"; chr1 rmsk exon 197151588 197152541 3121 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "4335"; repFamily "ERVL"; repLeft "-1332"; repStart "3339"; chr1 rmsk exon 197153149 197153401 840 + . gene_id "ERVLE_1q31.3g"; transcript_id "ERVLE_1q31.3g"; locus "ERVLE_1q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0292"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4447"; ### ERV316A3_1q31.3e ### chr1 rmsk gene 197231408 197235276 . + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0150"; model_cov "2195"; model_pct "42.0"; chr1 rmsk exon 197231408 197231853 3476 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "1334"; repFamily "ERVL"; repLeft "-3892"; repStart "869"; chr1 rmsk exon 197232337 197233378 3476 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "2360"; repFamily "ERVL"; repLeft "-2866"; repStart "1335"; chr1 rmsk exon 197233700 197234060 1172 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-3"; repStart "68"; chr1 rmsk exon 197234065 197234146 316 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "3787"; repFamily "ERVL"; repLeft "-1439"; repStart "3707"; chr1 rmsk exon 197234585 197234819 827 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "-1185"; repStart "3797"; chr1 rmsk exon 197234892 197235276 654 + . gene_id "ERV316A3_1q31.3e"; transcript_id "ERV316A3_1q31.3e"; locus "ERV316A3_1q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0150"; repClass "LTR"; repEnd "4385"; repFamily "ERVL"; repLeft "-841"; repStart "4004"; ### HERVL40_1q31.3 ### chr1 rmsk gene 197371543 197375581 . - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0021"; model_cov "2498"; model_pct "45.2"; chr1 rmsk exon 197371543 197371989 1620 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 197371990 197372611 6608 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "4894"; repStart "-2"; chr1 rmsk exon 197372729 197374231 6608 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "4893"; repFamily "ERVL"; repLeft "3389"; repStart "-637"; chr1 rmsk exon 197374550 197374869 902 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "916"; repStart "-4311"; chr1 rmsk exon 197375058 197375114 290 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "18"; repStart "-5455"; chr1 rmsk exon 197375129 197375581 1681 - . gene_id "HERVL40_1q31.3"; transcript_id "HERVL40_1q31.3"; locus "HERVL40_1q31.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0021"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_1q31.3h ### chr1 rmsk gene 197861389 197863040 . + . gene_id "ERVLE_1q31.3h"; transcript_id "ERVLE_1q31.3h"; locus "ERVLE_1q31.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0293"; model_cov "1260"; model_pct "22.2"; chr1 rmsk exon 197861389 197861960 715 + . gene_id "ERVLE_1q31.3h"; transcript_id "ERVLE_1q31.3h"; locus "ERVLE_1q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0293"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "-2345"; repStart "2728"; chr1 rmsk exon 197862395 197862510 322 + . gene_id "ERVLE_1q31.3h"; transcript_id "ERVLE_1q31.3h"; locus "ERVLE_1q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0293"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-2303"; repStart "3198"; chr1 rmsk exon 197862555 197863040 817 + . gene_id "ERVLE_1q31.3h"; transcript_id "ERVLE_1q31.3h"; locus "ERVLE_1q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0293"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1897"; repStart "3270"; ### HERVH_1q31.3 ### chr1 rmsk gene 198034651 198040990 . + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0072"; model_cov "5398"; model_pct "70.0"; chr1 rmsk exon 198034651 198035056 2622 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 198035059 198038181 14580 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 198038176 198038323 778 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 198038314 198039987 10598 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "3492"; chr1 rmsk exon 198039992 198040208 1254 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 198040209 198040582 2167 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 198040583 198040990 2827 + . gene_id "HERVH_1q31.3"; transcript_id "HERVH_1q31.3"; locus "HERVH_1q31.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0072"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_1q31.3c ### chr1 rmsk gene 198060648 198062536 . - . gene_id "ERVLB4_1q31.3c"; transcript_id "ERVLB4_1q31.3c"; locus "ERVLB4_1q31.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0112"; model_cov "1273"; model_pct "22.3"; chr1 rmsk exon 198060648 198060687 2896 - . gene_id "ERVLB4_1q31.3c"; transcript_id "ERVLB4_1q31.3c"; locus "ERVLB4_1q31.3c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0112"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "515"; repStart "0"; chr1 rmsk exon 198060741 198061017 2896 - . gene_id "ERVLB4_1q31.3c"; transcript_id "ERVLB4_1q31.3c"; locus "ERVLB4_1q31.3c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0112"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "221"; repStart "-40"; chr1 rmsk exon 198061066 198061277 2896 - . gene_id "ERVLB4_1q31.3c"; transcript_id "ERVLB4_1q31.3c"; locus "ERVLB4_1q31.3c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0112"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "2"; repStart "-334"; chr1 rmsk exon 198061280 198062536 7863 - . gene_id "ERVLB4_1q31.3c"; transcript_id "ERVLB4_1q31.3c"; locus "ERVLB4_1q31.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0112"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "4439"; repStart "-2"; ### ERVLE_1q31.3i ### chr1 rmsk gene 198353352 198354312 . + . gene_id "ERVLE_1q31.3i"; transcript_id "ERVLE_1q31.3i"; locus "ERVLE_1q31.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0294"; model_cov "889"; model_pct "15.7"; chr1 rmsk exon 198353352 198353615 991 + . gene_id "ERVLE_1q31.3i"; transcript_id "ERVLE_1q31.3i"; locus "ERVLE_1q31.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0294"; repClass "LTR"; repEnd "2957"; repFamily "ERVL"; repLeft "-2710"; repStart "2671"; chr1 rmsk exon 198353734 198353799 991 + . gene_id "ERVLE_1q31.3i"; transcript_id "ERVLE_1q31.3i"; locus "ERVLE_1q31.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0294"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2640"; repStart "2958"; chr1 rmsk exon 198353789 198354312 1618 + . gene_id "ERVLE_1q31.3i"; transcript_id "ERVLE_1q31.3i"; locus "ERVLE_1q31.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0294"; repClass "LTR"; repEnd "5305"; repFamily "ERVL"; repLeft "-362"; repStart "4771"; ### HUERSP2_1q32.1 ### chr1 rmsk gene 198827111 198831700 . - . gene_id "HUERSP2_1q32.1"; transcript_id "HUERSP2_1q32.1"; locus "HUERSP2_1q32.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0012"; model_cov "2977"; model_pct "96.4"; chr1 rmsk exon 198827111 198827948 4876 - . gene_id "HUERSP2_1q32.1"; transcript_id "HUERSP2_1q32.1"; locus "HUERSP2_1q32.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0012"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 198827949 198830784 17296 - . gene_id "HUERSP2_1q32.1"; transcript_id "HUERSP2_1q32.1"; locus "HUERSP2_1q32.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0012"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "230"; repStart "0"; chr1 rmsk exon 198830779 198830903 539 - . gene_id "HUERSP2_1q32.1"; transcript_id "HUERSP2_1q32.1"; locus "HUERSP2_1q32.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0012"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "1"; repStart "-2968"; chr1 rmsk exon 198830906 198831700 4861 - . gene_id "HUERSP2_1q32.1"; transcript_id "HUERSP2_1q32.1"; locus "HUERSP2_1q32.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0012"; repClass "LTR"; repEnd "835"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_1q32.1a ### chr1 rmsk gene 198976614 198978350 . + . gene_id "ERVLE_1q32.1a"; transcript_id "ERVLE_1q32.1a"; locus "ERVLE_1q32.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0295"; model_cov "1189"; model_pct "21.0"; chr1 rmsk exon 198976614 198976904 364 + . gene_id "ERVLE_1q32.1a"; transcript_id "ERVLE_1q32.1a"; locus "ERVLE_1q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0295"; repClass "LTR"; repEnd "1267"; repFamily "ERVL"; repLeft "-4400"; repStart "949"; chr1 rmsk exon 198977174 198977570 2002 + . gene_id "ERVLE_1q32.1a"; transcript_id "ERVLE_1q32.1a"; locus "ERVLE_1q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0295"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "-3717"; repStart "1540"; chr1 rmsk exon 198977872 198978350 2002 + . gene_id "ERVLE_1q32.1a"; transcript_id "ERVLE_1q32.1a"; locus "ERVLE_1q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0295"; repClass "LTR"; repEnd "2412"; repFamily "ERVL"; repLeft "-3255"; repStart "1951"; ### HERVL74_1q32.1 ### chr1 rmsk gene 199114304 199116964 . + . gene_id "HERVL74_1q32.1"; transcript_id "HERVL74_1q32.1"; locus "HERVL74_1q32.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0004"; model_cov "1544"; model_pct "27.2"; chr1 rmsk exon 199114304 199114592 4761 + . gene_id "HERVL74_1q32.1"; transcript_id "HERVL74_1q32.1"; locus "HERVL74_1q32.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0004"; repClass "LTR"; repEnd "4182"; repFamily "ERVL"; repLeft "-1503"; repStart "3897"; chr1 rmsk exon 199115184 199116242 4761 + . gene_id "HERVL74_1q32.1"; transcript_id "HERVL74_1q32.1"; locus "HERVL74_1q32.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0004"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-452"; repStart "4183"; chr1 rmsk exon 199116241 199116450 979 + . gene_id "HERVL74_1q32.1"; transcript_id "HERVL74_1q32.1"; locus "HERVL74_1q32.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0004"; repClass "LTR"; repEnd "5596"; repFamily "ERVL"; repLeft "-89"; repStart "5387"; chr1 rmsk exon 199116491 199116964 1963 + . gene_id "HERVL74_1q32.1"; transcript_id "HERVL74_1q32.1"; locus "HERVL74_1q32.1"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0004"; repClass "LTR"; repEnd "483"; repFamily "ERVL"; repLeft "-139"; repStart "41"; ### ERV316A3_1q32.1a ### chr1 rmsk gene 199358701 199359381 . - . gene_id "ERV316A3_1q32.1a"; transcript_id "ERV316A3_1q32.1a"; locus "ERV316A3_1q32.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0152"; model_cov "670"; model_pct "12.8"; chr1 rmsk exon 199358701 199358823 330 - . gene_id "ERV316A3_1q32.1a"; transcript_id "ERV316A3_1q32.1a"; locus "ERV316A3_1q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0152"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "4950"; repStart "-153"; chr1 rmsk exon 199358834 199359381 1836 - . gene_id "ERV316A3_1q32.1a"; transcript_id "ERV316A3_1q32.1a"; locus "ERV316A3_1q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0152"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "2309"; repStart "-2370"; ### ERVLB4_1q32.1 ### chr1 rmsk gene 199480552 199481782 . - . gene_id "ERVLB4_1q32.1"; transcript_id "ERVLB4_1q32.1"; locus "ERVLB4_1q32.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0113"; model_cov "1293"; model_pct "22.6"; chr1 rmsk exon 199480552 199481782 1883 - . gene_id "ERVLB4_1q32.1"; transcript_id "ERVLB4_1q32.1"; locus "ERVLB4_1q32.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0113"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "4042"; repStart "-379"; ### ERV316A3_1q32.1b ### chr1 rmsk gene 199544712 199548341 . + . gene_id "ERV316A3_1q32.1b"; transcript_id "ERV316A3_1q32.1b"; locus "ERV316A3_1q32.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0154"; model_cov "3198"; model_pct "61.2"; chr1 rmsk exon 199544712 199547876 8883 + . gene_id "ERV316A3_1q32.1b"; transcript_id "ERV316A3_1q32.1b"; locus "ERV316A3_1q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0154"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2028"; chr1 rmsk exon 199547877 199548341 1605 + . gene_id "ERV316A3_1q32.1b"; transcript_id "ERV316A3_1q32.1b"; locus "ERV316A3_1q32.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0154"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-22"; repStart "1"; ### HML5_1q32.1 ### chr1 rmsk gene 203426863 203429582 . - . gene_id "HML5_1q32.1"; transcript_id "HML5_1q32.1"; locus "HML5_1q32.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0012"; model_cov "1294"; model_pct "18.9"; chr1 rmsk exon 203426863 203427312 3261 - . gene_id "HML5_1q32.1"; transcript_id "HML5_1q32.1"; locus "HML5_1q32.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0012"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 203427313 203427426 830 - . gene_id "HML5_1q32.1"; transcript_id "HML5_1q32.1"; locus "HML5_1q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0012"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "6724"; repStart "0"; chr1 rmsk exon 203427424 203429152 6834 - . gene_id "HML5_1q32.1"; transcript_id "HML5_1q32.1"; locus "HML5_1q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0012"; repClass "LTR"; repEnd "1182"; repFamily "ERVK"; repLeft "1"; repStart "-5655"; chr1 rmsk exon 203429153 203429582 3166 - . gene_id "HML5_1q32.1"; transcript_id "HML5_1q32.1"; locus "HML5_1q32.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0012"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### HERVL_1q32.1 ### chr1 rmsk gene 204234573 204241173 . + . gene_id "HERVL_1q32.1"; transcript_id "HERVL_1q32.1"; locus "HERVL_1q32.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0112"; model_cov "5653"; model_pct "100.0"; chr1 rmsk exon 204234573 204234954 3143 + . gene_id "HERVL_1q32.1"; transcript_id "HERVL_1q32.1"; locus "HERVL_1q32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0112"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr1 rmsk exon 204235038 204235079 3143 + . gene_id "HERVL_1q32.1"; transcript_id "HERVL_1q32.1"; locus "HERVL_1q32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0112"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "390"; chr1 rmsk exon 204235080 204240742 44045 + . gene_id "HERVL_1q32.1"; transcript_id "HERVL_1q32.1"; locus "HERVL_1q32.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0112"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 204240743 204241173 3187 + . gene_id "HERVL_1q32.1"; transcript_id "HERVL_1q32.1"; locus "HERVL_1q32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0112"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_1q32.1b ### chr1 rmsk gene 204596576 204597643 . + . gene_id "ERVLE_1q32.1b"; transcript_id "ERVLE_1q32.1b"; locus "ERVLE_1q32.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0299"; model_cov "983"; model_pct "17.3"; chr1 rmsk exon 204596576 204596725 483 + . gene_id "ERVLE_1q32.1b"; transcript_id "ERVLE_1q32.1b"; locus "ERVLE_1q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0299"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "-2341"; repStart "3176"; chr1 rmsk exon 204596855 204597643 2255 + . gene_id "ERVLE_1q32.1b"; transcript_id "ERVLE_1q32.1b"; locus "ERVLE_1q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0299"; repClass "LTR"; repEnd "4310"; repFamily "ERVL"; repLeft "-1357"; repStart "3477"; ### ERVLE_1q32.1c ### chr1 rmsk gene 204753218 204756874 . + . gene_id "ERVLE_1q32.1c"; transcript_id "ERVLE_1q32.1c"; locus "ERVLE_1q32.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0300"; model_cov "2216"; model_pct "39.1"; chr1 rmsk exon 204753218 204753973 1078 + . gene_id "ERVLE_1q32.1c"; transcript_id "ERVLE_1q32.1c"; locus "ERVLE_1q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0300"; repClass "LTR"; repEnd "1273"; repFamily "ERVL"; repLeft "-4394"; repStart "425"; chr1 rmsk exon 204755375 204755921 1520 + . gene_id "ERVLE_1q32.1c"; transcript_id "ERVLE_1q32.1c"; locus "ERVLE_1q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0300"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "-3495"; repStart "1615"; chr1 rmsk exon 204756040 204756638 1908 + . gene_id "ERVLE_1q32.1c"; transcript_id "ERVLE_1q32.1c"; locus "ERVLE_1q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0300"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "-2051"; repStart "2981"; chr1 rmsk exon 204756702 204756874 639 + . gene_id "ERVLE_1q32.1c"; transcript_id "ERVLE_1q32.1c"; locus "ERVLE_1q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0300"; repClass "LTR"; repEnd "3878"; repFamily "ERVL"; repLeft "-1789"; repStart "3702"; ### ERVLE_1q32.1d ### chr1 rmsk gene 204774535 204780139 . - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0301"; model_cov "4184"; model_pct "73.8"; chr1 rmsk exon 204774535 204774697 5054 - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0301"; repClass "LTR"; repEnd "4988"; repFamily "ERVL"; repLeft "4833"; repStart "-679"; chr1 rmsk exon 204775096 204776592 5054 - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0301"; repClass "LTR"; repEnd "4832"; repFamily "ERVL"; repLeft "3268"; repStart "-835"; chr1 rmsk exon 204776619 204777407 2971 - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0301"; repClass "LTR"; repEnd "3196"; repFamily "ERVL"; repLeft "2287"; repStart "-2471"; chr1 rmsk exon 204777697 204778383 4728 - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0301"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "1599"; repStart "-3394"; chr1 rmsk exon 204779319 204780139 4728 - . gene_id "ERVLE_1q32.1d"; transcript_id "ERVLE_1q32.1d"; locus "ERVLE_1q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0301"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "716"; repStart "-4069"; ### HML3_1q32.1a ### chr1 rmsk gene 205776764 205778085 . - . gene_id "HML3_1q32.1a"; transcript_id "HML3_1q32.1a"; locus "HML3_1q32.1a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0018"; model_cov "922"; model_pct "15.3"; chr1 rmsk exon 205776764 205777285 4438 - . gene_id "HML3_1q32.1a"; transcript_id "HML3_1q32.1a"; locus "HML3_1q32.1a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0018"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 205777286 205778085 4638 - . gene_id "HML3_1q32.1a"; transcript_id "HML3_1q32.1a"; locus "HML3_1q32.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0018"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5099"; repStart "0"; ### HML1_1q32.1 ### chr1 rmsk gene 205857564 205862572 . + . gene_id "HML1_1q32.1"; transcript_id "HML1_1q32.1"; locus "HML1_1q32.1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0004"; model_cov "4421"; model_pct "72.5"; chr1 rmsk exon 205857564 205858176 3075 + . gene_id "HML1_1q32.1"; transcript_id "HML1_1q32.1"; locus "HML1_1q32.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0004"; repClass "LTR"; repEnd "606"; repFamily "ERVK"; repLeft "-2"; repStart "15"; chr1 rmsk exon 205858179 205862406 24718 + . gene_id "HML1_1q32.1"; transcript_id "HML1_1q32.1"; locus "HML1_1q32.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0004"; repClass "LTR"; repEnd "4310"; repFamily "ERVK"; repLeft "-1786"; repStart "1"; chr1 rmsk exon 205862396 205862572 879 + . gene_id "HML1_1q32.1"; transcript_id "HML1_1q32.1"; locus "HML1_1q32.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0004"; repClass "LTR"; repEnd "5143"; repFamily "ERVK"; repLeft "-953"; repStart "5031"; ### HERVK14C_1q32.1 ### chr1 rmsk gene 205862751 205864227 . + . gene_id "HERVK14C_1q32.1"; transcript_id "HERVK14C_1q32.1"; locus "HERVK14C_1q32.1"; category "internal"; intModel "HERVK14C-int"; locid "HERVK14C-int_0002"; model_cov "2230"; model_pct "30.0"; chr1 rmsk exon 205862751 205864227 2649 + . gene_id "HERVK14C_1q32.1"; transcript_id "HERVK14C_1q32.1"; locus "HERVK14C_1q32.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0002"; repClass "LTR"; repEnd "7422"; repFamily "ERVK"; repLeft "-12"; repStart "5192"; ### HERVW_1q32.1 ### chr1 rmsk gene 205866332 205871494 . - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0018"; model_cov "7024"; model_pct "81.4"; chr1 rmsk exon 205866332 205866662 2335 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr1 rmsk exon 205866665 205866949 2351 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "8335"; repStart "-3"; chr1 rmsk exon 205866940 205866978 309 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr1 rmsk exon 205866975 205867808 6560 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "5707"; repStart "-1479"; chr1 rmsk exon 205867930 205870200 10639 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "6381"; repFamily "ERV1"; repLeft "2430"; repStart "-2245"; chr1 rmsk exon 205870184 205871494 9678 - . gene_id "HERVW_1q32.1"; transcript_id "HERVW_1q32.1"; locus "HERVW_1q32.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0018"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "709"; repStart "-6610"; ### HERVH_1q32.1a ### chr1 rmsk gene 205871746 205875092 . + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0073"; model_cov "3038"; model_pct "39.4"; chr1 rmsk exon 205871746 205872636 5449 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-4720"; repStart "2114"; chr1 rmsk exon 205872622 205873068 2770 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3140"; chr1 rmsk exon 205873072 205873848 3632 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4882"; chr1 rmsk exon 205873840 205874100 1706 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr1 rmsk exon 205874094 205874669 3648 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 205874670 205875092 2890 + . gene_id "HERVH_1q32.1a"; transcript_id "HERVH_1q32.1a"; locus "HERVH_1q32.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0073"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_1q32.1b ### chr1 rmsk gene 205884573 205890424 . - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0074"; model_cov "6092"; model_pct "79.0"; chr1 rmsk exon 205884573 205884996 3431 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "1"; repStart "-39"; chr1 rmsk exon 205884997 205885548 3185 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr1 rmsk exon 205885542 205887643 6558 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "3140"; repStart "-1697"; chr1 rmsk exon 205887623 205889798 12297 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "793"; repStart "-4718"; chr1 rmsk exon 205889853 205890317 2378 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr1 rmsk exon 205890320 205890424 771 - . gene_id "HERVH_1q32.1b"; transcript_id "HERVH_1q32.1b"; locus "HERVH_1q32.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0074"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### HML3_1q32.1b ### chr1 rmsk gene 205890691 205896160 . + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0019"; model_cov "4454"; model_pct "74.0"; chr1 rmsk exon 205890691 205891197 4165 + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0019"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 205891198 205893986 21676 + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0019"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr1 rmsk exon 205893987 205894217 1903 + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0019"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr1 rmsk exon 205894217 205895642 10900 + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0019"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4594"; chr1 rmsk exon 205895643 205896160 4125 + . gene_id "HML3_1q32.1b"; transcript_id "HML3_1q32.1b"; locus "HML3_1q32.1b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0019"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HARLEQUIN_1q32.1 ### chr1 rmsk gene 206052519 206058912 . + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0019"; model_cov "5438"; model_pct "78.9"; chr1 rmsk exon 206052519 206053000 4242 + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0019"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 206053001 206053902 6637 + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0019"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "-6003"; repStart "1"; chr1 rmsk exon 206053889 206054886 7165 + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0019"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr1 rmsk exon 206054886 206058429 21035 + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0019"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "3352"; chr1 rmsk exon 206058430 206058912 4230 + . gene_id "HARLEQUIN_1q32.1"; transcript_id "HARLEQUIN_1q32.1"; locus "HARLEQUIN_1q32.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0019"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1q32.1e ### chr1 rmsk gene 206809925 206813122 . + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0302"; model_cov "2610"; model_pct "46.1"; chr1 rmsk exon 206809925 206810706 2805 + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0302"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "-4199"; repStart "688"; chr1 rmsk exon 206811114 206811253 2805 + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0302"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-4059"; repStart "1469"; chr1 rmsk exon 206811489 206811548 306 + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0302"; repClass "LTR"; repEnd "1806"; repFamily "ERVL"; repLeft "-3861"; repStart "1746"; chr1 rmsk exon 206811546 206812788 4456 + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0302"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "-410"; repStart "3970"; chr1 rmsk exon 206812809 206813122 380 + . gene_id "ERVLE_1q32.1e"; transcript_id "ERVLE_1q32.1e"; locus "ERVLE_1q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0302"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5323"; ### ERV316A3_1q32.1c ### chr1 rmsk gene 206973325 206977103 . - . gene_id "ERV316A3_1q32.1c"; transcript_id "ERV316A3_1q32.1c"; locus "ERV316A3_1q32.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0155"; model_cov "3535"; model_pct "67.6"; chr1 rmsk exon 206973325 206973776 1526 - . gene_id "ERV316A3_1q32.1c"; transcript_id "ERV316A3_1q32.1c"; locus "ERV316A3_1q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0155"; repClass "LTR"; repEnd "4165"; repFamily "ERVL"; repLeft "3725"; repStart "-1061"; chr1 rmsk exon 206973791 206976020 9293 - . gene_id "ERV316A3_1q32.1c"; transcript_id "ERV316A3_1q32.1c"; locus "ERV316A3_1q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0155"; repClass "LTR"; repEnd "3635"; repFamily "ERVL"; repLeft "1334"; repStart "-1591"; chr1 rmsk exon 206976326 206977103 9293 - . gene_id "ERV316A3_1q32.1c"; transcript_id "ERV316A3_1q32.1c"; locus "ERV316A3_1q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0155"; repClass "LTR"; repEnd "1333"; repFamily "ERVL"; repLeft "539"; repStart "-3893"; ### ERVLE_1q32.2a ### chr1 rmsk gene 207118838 207120476 . - . gene_id "ERVLE_1q32.2a"; transcript_id "ERVLE_1q32.2a"; locus "ERVLE_1q32.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0303"; model_cov "926"; model_pct "16.3"; chr1 rmsk exon 207118838 207119461 1334 - . gene_id "ERVLE_1q32.2a"; transcript_id "ERVLE_1q32.2a"; locus "ERVLE_1q32.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0303"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 207119465 207120227 2723 - . gene_id "ERVLE_1q32.2a"; transcript_id "ERVLE_1q32.2a"; locus "ERVLE_1q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0303"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "4798"; repStart "-4"; chr1 rmsk exon 207120416 207120476 2723 - . gene_id "ERVLE_1q32.2a"; transcript_id "ERVLE_1q32.2a"; locus "ERVLE_1q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0303"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "4783"; repStart "-823"; ### ERV316A3_1q32.2a ### chr1 rmsk gene 207135436 207140442 . - . gene_id "ERV316A3_1q32.2a"; transcript_id "ERV316A3_1q32.2a"; locus "ERV316A3_1q32.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0156"; model_cov "3674"; model_pct "70.3"; chr1 rmsk exon 207135436 207136679 8084 - . gene_id "ERV316A3_1q32.2a"; transcript_id "ERV316A3_1q32.2a"; locus "ERV316A3_1q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0156"; repClass "LTR"; repEnd "4709"; repFamily "ERVL"; repLeft "3465"; repStart "-517"; chr1 rmsk exon 207138107 207140442 8084 - . gene_id "ERV316A3_1q32.2a"; transcript_id "ERV316A3_1q32.2a"; locus "ERV316A3_1q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0156"; repClass "LTR"; repEnd "3464"; repFamily "ERVL"; repLeft "1034"; repStart "-1762"; ### HERV3_1q32.2 ### chr1 rmsk gene 207219802 207221337 . + . gene_id "HERV3_1q32.2"; transcript_id "HERV3_1q32.2"; locus "HERV3_1q32.2"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0005"; model_cov "1029"; model_pct "12.2"; chr1 rmsk exon 207219802 207220376 3191 + . gene_id "HERV3_1q32.2"; transcript_id "HERV3_1q32.2"; locus "HERV3_1q32.2"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0005"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 207220396 207220882 1668 + . gene_id "HERV3_1q32.2"; transcript_id "HERV3_1q32.2"; locus "HERV3_1q32.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0005"; repClass "LTR"; repEnd "185"; repFamily "ERV1"; repLeft "-8241"; repStart "-290"; chr1 rmsk exon 207221059 207221337 472 + . gene_id "HERV3_1q32.2"; transcript_id "HERV3_1q32.2"; locus "HERV3_1q32.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0005"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-7874"; repStart "-2"; ### ERVLE_1q32.2b ### chr1 rmsk gene 207417758 207418534 . + . gene_id "ERVLE_1q32.2b"; transcript_id "ERVLE_1q32.2b"; locus "ERVLE_1q32.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0304"; model_cov "723"; model_pct "12.8"; chr1 rmsk exon 207417758 207418024 437 + . gene_id "ERVLE_1q32.2b"; transcript_id "ERVLE_1q32.2b"; locus "ERVLE_1q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0304"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-5187"; repStart "231"; chr1 rmsk exon 207418039 207418534 1539 + . gene_id "ERVLE_1q32.2b"; transcript_id "ERVLE_1q32.2b"; locus "ERVLE_1q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0304"; repClass "LTR"; repEnd "1162"; repFamily "ERVL"; repLeft "-4505"; repStart "688"; ### HERVL18_1q32.2 ### chr1 rmsk gene 207420882 207425638 . - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0013"; model_cov "3216"; model_pct "53.2"; chr1 rmsk exon 207420882 207421454 3407 - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0013"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 207421646 207422459 3996 - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0013"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2720"; repStart "-2556"; chr1 rmsk exon 207422459 207424199 11516 - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0013"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "620"; repStart "-3595"; chr1 rmsk exon 207424472 207425092 11516 - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0013"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "6"; repStart "-5428"; chr1 rmsk exon 207425130 207425638 3059 - . gene_id "HERVL18_1q32.2"; transcript_id "HERVL18_1q32.2"; locus "HERVL18_1q32.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0013"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "5"; repStart "-76"; ### ERVLE_1q32.2c ### chr1 rmsk gene 207426048 207427383 . + . gene_id "ERVLE_1q32.2c"; transcript_id "ERVLE_1q32.2c"; locus "ERVLE_1q32.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0305"; model_cov "886"; model_pct "15.6"; chr1 rmsk exon 207426048 207426256 484 + . gene_id "ERVLE_1q32.2c"; transcript_id "ERVLE_1q32.2c"; locus "ERVLE_1q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0305"; repClass "LTR"; repEnd "1383"; repFamily "ERVL"; repLeft "-4284"; repStart "1168"; chr1 rmsk exon 207426628 207426824 484 + . gene_id "ERVLE_1q32.2c"; transcript_id "ERVLE_1q32.2c"; locus "ERVLE_1q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0305"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-4096"; repStart "1373"; chr1 rmsk exon 207426835 207427067 839 + . gene_id "ERVLE_1q32.2c"; transcript_id "ERVLE_1q32.2c"; locus "ERVLE_1q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0305"; repClass "LTR"; repEnd "2250"; repFamily "ERVL"; repLeft "-3417"; repStart "2006"; chr1 rmsk exon 207427164 207427383 694 + . gene_id "ERVLE_1q32.2c"; transcript_id "ERVLE_1q32.2c"; locus "ERVLE_1q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0305"; repClass "LTR"; repEnd "2646"; repFamily "ERVL"; repLeft "-3021"; repStart "2417"; ### ERVLE_1q32.2d ### chr1 rmsk gene 207512891 207513462 . - . gene_id "ERVLE_1q32.2d"; transcript_id "ERVLE_1q32.2d"; locus "ERVLE_1q32.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0306"; model_cov "581"; model_pct "10.3"; chr1 rmsk exon 207512891 207513462 2196 - . gene_id "ERVLE_1q32.2d"; transcript_id "ERVLE_1q32.2d"; locus "ERVLE_1q32.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0306"; repClass "LTR"; repEnd "1834"; repFamily "ERVL"; repLeft "1253"; repStart "-3833"; ### HML2_1q32.2 ### chr1 rmsk gene 207635112 207639291 . - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0014"; model_cov "3184"; model_pct "42.3"; chr1 rmsk exon 207635112 207636074 7708 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 207636165 207637777 13912 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr1 rmsk exon 207637777 207638358 4802 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002"; chr1 rmsk exon 207638337 207639291 7029 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1729"; repStart "-4820"; ### ERVLE_1q32.2e ### chr1 rmsk gene 207685206 207685768 . - . gene_id "ERVLE_1q32.2e"; transcript_id "ERVLE_1q32.2e"; locus "ERVLE_1q32.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0307"; model_cov "581"; model_pct "10.3"; chr1 rmsk exon 207685206 207685768 2056 - . gene_id "ERVLE_1q32.2e"; transcript_id "ERVLE_1q32.2e"; locus "ERVLE_1q32.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0307"; repClass "LTR"; repEnd "1834"; repFamily "ERVL"; repLeft "1253"; repStart "-3833"; ### HUERSP3B_1q32.2 ### chr1 rmsk gene 207741921 207748554 . + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0012"; model_cov "5634"; model_pct "76.0"; chr1 rmsk exon 207741921 207741944 3743 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "621"; chr1 rmsk exon 207741945 207742041 446 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "1"; chr1 rmsk exon 207742045 207742181 765 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "409"; chr1 rmsk exon 207742195 207743985 6397 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "750"; chr1 rmsk exon 207744396 207745208 4873 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chr1 rmsk exon 207745200 207747909 17774 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "7409"; repFamily "ERV1"; repLeft "-9"; repStart "4713"; chr1 rmsk exon 207747920 207748554 4036 + . gene_id "HUERSP3B_1q32.2"; transcript_id "HUERSP3B_1q32.2"; locus "HUERSP3B_1q32.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0012"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_1q32.2b ### chr1 rmsk gene 208984563 208986825 . - . gene_id "ERV316A3_1q32.2b"; transcript_id "ERV316A3_1q32.2b"; locus "ERV316A3_1q32.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0157"; model_cov "1780"; model_pct "34.1"; chr1 rmsk exon 208984563 208985007 1740 - . gene_id "ERV316A3_1q32.2b"; transcript_id "ERV316A3_1q32.2b"; locus "ERV316A3_1q32.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0157"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr1 rmsk exon 208985079 208985523 1210 - . gene_id "ERV316A3_1q32.2b"; transcript_id "ERV316A3_1q32.2b"; locus "ERV316A3_1q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0157"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "4675"; repStart "-91"; chr1 rmsk exon 208985521 208986825 2208 - . gene_id "ERV316A3_1q32.2b"; transcript_id "ERV316A3_1q32.2b"; locus "ERV316A3_1q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0157"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "1581"; repStart "-2325"; ### ERV316A3_1q32.2c ### chr1 rmsk gene 209283261 209286159 . - . gene_id "ERV316A3_1q32.2c"; transcript_id "ERV316A3_1q32.2c"; locus "ERV316A3_1q32.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0158"; model_cov "2203"; model_pct "42.2"; chr1 rmsk exon 209283261 209283884 4809 - . gene_id "ERV316A3_1q32.2c"; transcript_id "ERV316A3_1q32.2c"; locus "ERV316A3_1q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0158"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "2794"; repStart "-1862"; chr1 rmsk exon 209284197 209285370 4809 - . gene_id "ERV316A3_1q32.2c"; transcript_id "ERV316A3_1q32.2c"; locus "ERV316A3_1q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0158"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "1579"; repStart "-2433"; chr1 rmsk exon 209285490 209285906 1192 - . gene_id "ERV316A3_1q32.2c"; transcript_id "ERV316A3_1q32.2c"; locus "ERV316A3_1q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0158"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "27"; repStart "-4780"; chr1 rmsk exon 209285928 209286159 913 - . gene_id "ERV316A3_1q32.2c"; transcript_id "ERV316A3_1q32.2c"; locus "ERV316A3_1q32.2c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0158"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "252"; repStart "0"; ### ERV316A3_1q32.2d ### chr1 rmsk gene 209444886 209448546 . - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0159"; model_cov "2184"; model_pct "41.8"; chr1 rmsk exon 209444886 209445302 1534 - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0159"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "11"; repStart "-13"; chr1 rmsk exon 209445313 209445890 5727 - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0159"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4622"; repStart "0"; chr1 rmsk exon 209446187 209446684 5727 - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0159"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "4135"; repStart "-605"; chr1 rmsk exon 209447143 209447563 5727 - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0159"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "3697"; repStart "-1092"; chr1 rmsk exon 209447873 209448546 5727 - . gene_id "ERV316A3_1q32.2d"; transcript_id "ERV316A3_1q32.2d"; locus "ERV316A3_1q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0159"; repClass "LTR"; repEnd "3696"; repFamily "ERVL"; repLeft "3039"; repStart "-1530"; ### HERVH_1q32.2a ### chr1 rmsk gene 209448805 209454002 . + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0075"; model_cov "4155"; model_pct "53.9"; chr1 rmsk exon 209448805 209449256 3479 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 209449259 209452322 16751 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 209452317 209452464 928 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 209452464 209452958 1237 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4740"; chr1 rmsk exon 209452960 209453173 1368 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 209453172 209453551 2616 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 209453552 209454002 3485 + . gene_id "HERVH_1q32.2a"; transcript_id "HERVH_1q32.2a"; locus "HERVH_1q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0075"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_1q32.2e ### chr1 rmsk gene 209910312 209913183 . + . gene_id "ERV316A3_1q32.2e"; transcript_id "ERV316A3_1q32.2e"; locus "ERV316A3_1q32.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0160"; model_cov "2487"; model_pct "47.6"; chr1 rmsk exon 209910312 209911452 3465 + . gene_id "ERV316A3_1q32.2e"; transcript_id "ERV316A3_1q32.2e"; locus "ERV316A3_1q32.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0160"; repClass "LTR"; repEnd "1861"; repFamily "ERVL"; repLeft "-3365"; repStart "657"; chr1 rmsk exon 209911533 209912790 4324 + . gene_id "ERV316A3_1q32.2e"; transcript_id "ERV316A3_1q32.2e"; locus "ERV316A3_1q32.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0160"; repClass "LTR"; repEnd "5149"; repFamily "ERVL"; repLeft "-77"; repStart "3866"; chr1 rmsk exon 209912831 209913183 958 + . gene_id "ERV316A3_1q32.2e"; transcript_id "ERV316A3_1q32.2e"; locus "ERV316A3_1q32.2e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0160"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "124"; ### ERVLB4_1q32.2a ### chr1 rmsk gene 210082257 210084881 . - . gene_id "ERVLB4_1q32.2a"; transcript_id "ERVLB4_1q32.2a"; locus "ERVLB4_1q32.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0115"; model_cov "1391"; model_pct "24.3"; chr1 rmsk exon 210082257 210082472 401 - . gene_id "ERVLB4_1q32.2a"; transcript_id "ERVLB4_1q32.2a"; locus "ERVLB4_1q32.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0115"; repClass "LTR"; repEnd "3798"; repFamily "ERVL"; repLeft "3557"; repStart "-1916"; chr1 rmsk exon 210082571 210082860 501 - . gene_id "ERVLB4_1q32.2a"; transcript_id "ERVLB4_1q32.2a"; locus "ERVLB4_1q32.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0115"; repClass "LTR"; repEnd "3506"; repFamily "ERVL"; repLeft "3231"; repStart "-2208"; chr1 rmsk exon 210084021 210084881 1457 - . gene_id "ERVLB4_1q32.2a"; transcript_id "ERVLB4_1q32.2a"; locus "ERVLB4_1q32.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0115"; repClass "LTR"; repEnd "3243"; repFamily "ERVL"; repLeft "2368"; repStart "-2471"; ### HERVH_1q32.2b ### chr1 rmsk gene 210111090 210116207 . - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0076"; model_cov "4648"; model_pct "60.3"; chr1 rmsk exon 210111090 210111452 2146 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 210111461 210111874 2627 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "7697"; repFamily "ERV1"; repLeft "7283"; repStart "-16"; chr1 rmsk exon 210111879 210112911 7119 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "3993"; repStart "-2693"; chr1 rmsk exon 210112923 210113289 2283 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "3357"; repStart "-3978"; chr1 rmsk exon 210113290 210115845 13797 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chr1 rmsk exon 210115848 210116207 2112 - . gene_id "HERVH_1q32.2b"; transcript_id "HERVH_1q32.2b"; locus "HERVH_1q32.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0076"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1q32.2c ### chr1 rmsk gene 210187604 210195678 . + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0077"; model_cov "7220"; model_pct "93.6"; chr1 rmsk exon 210187604 210188020 2816 + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0077"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 210188021 210188427 1039 + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0077"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr1 rmsk exon 210188503 210190693 11103 + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0077"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr1 rmsk exon 210190673 210195300 22422 + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0077"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3140"; chr1 rmsk exon 210195301 210195678 2538 + . gene_id "HERVH_1q32.2c"; transcript_id "HERVH_1q32.2c"; locus "HERVH_1q32.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0077"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_1q32.2b ### chr1 rmsk gene 210436679 210440818 . - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0116"; model_cov "3436"; model_pct "60.1"; chr1 rmsk exon 210436679 210437473 1524 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "4137"; repStart "-584"; chr1 rmsk exon 210437495 210438320 1785 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "3335"; repStart "-1491"; chr1 rmsk exon 210438327 210438459 404 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "2889"; repStart "-2691"; chr1 rmsk exon 210438635 210438675 256 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "1843"; repFamily "ERVL"; repLeft "1803"; repStart "-3871"; chr1 rmsk exon 210438947 210439615 1097 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "1606"; repFamily "ERVL"; repLeft "961"; repStart "-4108"; chr1 rmsk exon 210439658 210440197 602 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "831"; repFamily "ERVL"; repLeft "294"; repStart "-4883"; chr1 rmsk exon 210440619 210440818 602 - . gene_id "ERVLB4_1q32.2b"; transcript_id "ERVLB4_1q32.2b"; locus "ERVLB4_1q32.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0116"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "94"; repStart "-5421"; ### HERVK11_1q32.3 ### chr1 rmsk gene 211398720 211400825 . + . gene_id "HERVK11_1q32.3"; transcript_id "HERVK11_1q32.3"; locus "HERVK11_1q32.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0012"; model_cov "1270"; model_pct "16.0"; chr1 rmsk exon 211398720 211399312 4716 + . gene_id "HERVK11_1q32.3"; transcript_id "HERVK11_1q32.3"; locus "HERVK11_1q32.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0012"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "476"; chr1 rmsk exon 211399313 211400193 3974 + . gene_id "HERVK11_1q32.3"; transcript_id "HERVK11_1q32.3"; locus "HERVK11_1q32.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0012"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "-7102"; repStart "1"; chr1 rmsk exon 211400194 211400825 2896 + . gene_id "HERVK11_1q32.3"; transcript_id "HERVK11_1q32.3"; locus "HERVK11_1q32.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0012"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "1165"; ### HARLEQUIN_1q32.3 ### chr1 rmsk gene 211687055 211694581 . + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0020"; model_cov "6595"; model_pct "95.6"; chr1 rmsk exon 211687055 211687501 3499 + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0020"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 211687502 211687848 2462 + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0020"; repClass "LTR"; repEnd "-604"; repFamily "ERV1"; repLeft "-7500"; repStart "-950"; chr1 rmsk exon 211687892 211689054 8776 + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0020"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "-5474"; repStart "263"; chr1 rmsk exon 211689035 211694119 40918 + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0020"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1806"; chr1 rmsk exon 211694120 211694581 3607 + . gene_id "HARLEQUIN_1q32.3"; transcript_id "HARLEQUIN_1q32.3"; locus "HARLEQUIN_1q32.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0020"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_1q32.3 ### chr1 rmsk gene 211706726 211711267 . + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0032"; model_cov "2753"; model_pct "46.3"; chr1 rmsk exon 211706726 211707275 4571 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0032"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-2"; repStart "2"; chr1 rmsk exon 211707364 211709071 5191 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1"; chr1 rmsk exon 211709068 211709118 276 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "-3726"; repStart "2167"; chr1 rmsk exon 211709115 211709398 2835 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "3154"; repFamily "ERV1"; repLeft "-2792"; repStart "3117"; chr1 rmsk exon 211709697 211709772 2835 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "3233"; repFamily "ERV1"; repLeft "-2713"; repStart "3155"; chr1 rmsk exon 211710074 211710579 2835 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "3708"; repFamily "ERV1"; repLeft "-2238"; repStart "3234"; chr1 rmsk exon 211710611 211710706 805 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0032"; repClass "LTR"; repEnd "5940"; repFamily "ERV1"; repLeft "-6"; repStart "5845"; chr1 rmsk exon 211710711 211711267 4311 + . gene_id "MER41_1q32.3"; transcript_id "MER41_1q32.3"; locus "MER41_1q32.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0032"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_1q32.3a ### chr1 rmsk gene 211855798 211857873 . - . gene_id "HERVW_1q32.3a"; transcript_id "HERVW_1q32.3a"; locus "HERVW_1q32.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0021"; model_cov "1820"; model_pct "21.1"; chr1 rmsk exon 211855798 211856072 2125 - . gene_id "HERVW_1q32.3a"; transcript_id "HERVW_1q32.3a"; locus "HERVW_1q32.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0021"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr1 rmsk exon 211856073 211857223 9743 - . gene_id "HERVW_1q32.3a"; transcript_id "HERVW_1q32.3a"; locus "HERVW_1q32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0021"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7473"; repStart "0"; chr1 rmsk exon 211857207 211857873 5668 - . gene_id "HERVW_1q32.3a"; transcript_id "HERVW_1q32.3a"; locus "HERVW_1q32.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0021"; repClass "LTR"; repEnd "4578"; repFamily "ERV1"; repLeft "3911"; repStart "-4048"; ### HERVW_1q32.3b ### chr1 rmsk gene 211857874 211858921 . + . gene_id "HERVW_1q32.3b"; transcript_id "HERVW_1q32.3b"; locus "HERVW_1q32.3b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0022"; model_cov "1048"; model_pct "12.1"; chr1 rmsk exon 211857874 211858921 9151 + . gene_id "HERVW_1q32.3b"; transcript_id "HERVW_1q32.3b"; locus "HERVW_1q32.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0022"; repClass "LTR"; repEnd "3889"; repFamily "ERV1"; repLeft "-4737"; repStart "2841"; ### ERV316A3_1q32.3a ### chr1 rmsk gene 212131798 212132463 . + . gene_id "ERV316A3_1q32.3a"; transcript_id "ERV316A3_1q32.3a"; locus "ERV316A3_1q32.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0161"; model_cov "672"; model_pct "12.9"; chr1 rmsk exon 212131798 212132222 1086 + . gene_id "ERV316A3_1q32.3a"; transcript_id "ERV316A3_1q32.3a"; locus "ERV316A3_1q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0161"; repClass "LTR"; repEnd "3509"; repFamily "ERVL"; repLeft "-1717"; repStart "3038"; chr1 rmsk exon 212132267 212132463 744 + . gene_id "ERV316A3_1q32.3a"; transcript_id "ERV316A3_1q32.3a"; locus "ERV316A3_1q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0161"; repClass "LTR"; repEnd "4154"; repFamily "ERVL"; repLeft "-1072"; repStart "3953"; ### ERV316A3_1q32.3b ### chr1 rmsk gene 212138300 212139424 . + . gene_id "ERV316A3_1q32.3b"; transcript_id "ERV316A3_1q32.3b"; locus "ERV316A3_1q32.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0163"; model_cov "789"; model_pct "15.1"; chr1 rmsk exon 212138300 212139170 2326 + . gene_id "ERV316A3_1q32.3b"; transcript_id "ERV316A3_1q32.3b"; locus "ERV316A3_1q32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0163"; repClass "LTR"; repEnd "4820"; repFamily "ERVL"; repLeft "-406"; repStart "4031"; chr1 rmsk exon 212139180 212139424 949 + . gene_id "ERV316A3_1q32.3b"; transcript_id "ERV316A3_1q32.3b"; locus "ERV316A3_1q32.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0163"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "-195"; repStart "1"; ### PRIMA41_1q32.3 ### chr1 rmsk gene 212422529 212431617 . + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0009"; model_cov "7136"; model_pct "92.0"; chr1 rmsk exon 212422529 212422804 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "945"; repFamily "ERV1"; repLeft "-6811"; repStart "663"; chr1 rmsk exon 212422944 212424880 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "2902"; repFamily "ERV1"; repLeft "-4854"; repStart "946"; chr1 rmsk exon 212424964 212425850 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "3800"; repFamily "ERV1"; repLeft "-3956"; repStart "2903"; chr1 rmsk exon 212426162 212427084 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "4709"; repFamily "ERV1"; repLeft "-3047"; repStart "3801"; chr1 rmsk exon 212427400 212428693 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "5895"; repFamily "ERV1"; repLeft "-1861"; repStart "4657"; chr1 rmsk exon 212428729 212429922 20841 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "7040"; repFamily "ERV1"; repLeft "-716"; repStart "5896"; chr1 rmsk exon 212430395 212431096 11502 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "7752"; repFamily "ERV1"; repLeft "-4"; repStart "7041"; chr1 rmsk exon 212431101 212431230 553 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "174"; repFamily "ERV1"; repLeft "-383"; repStart "37"; chr1 rmsk exon 212431506 212431617 477 + . gene_id "PRIMA41_1q32.3"; transcript_id "PRIMA41_1q32.3"; locus "PRIMA41_1q32.3"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0009"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-10"; repStart "432"; ### HERVH_1q32.3a ### chr1 rmsk gene 212843811 212846806 . + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0078"; model_cov "2896"; model_pct "37.5"; chr1 rmsk exon 212843811 212843951 917 + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0078"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-4882"; repStart "2688"; chr1 rmsk exon 212843952 212845566 6837 + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0078"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-1805"; repStart "3980"; chr1 rmsk exon 212845567 212845831 1519 + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0078"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr1 rmsk exon 212845825 212846382 3513 + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0078"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr1 rmsk exon 212846383 212846806 2894 + . gene_id "HERVH_1q32.3a"; transcript_id "HERVH_1q32.3a"; locus "HERVH_1q32.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0078"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_1q32.3b ### chr1 rmsk gene 212910008 212914681 . + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0079"; model_cov "3643"; model_pct "47.2"; chr1 rmsk exon 212910008 212910445 3404 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "-15"; repStart "1"; chr1 rmsk exon 212910475 212912921 16898 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "521"; chr1 rmsk exon 212912901 212913047 912 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 212913038 212913595 2457 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4740"; chr1 rmsk exon 212913597 212913821 1358 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 212913820 212914199 2550 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 212914200 212914681 3335 + . gene_id "HERVH_1q32.3b"; transcript_id "HERVH_1q32.3b"; locus "HERVH_1q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0079"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_1q32.3 ### chr1 rmsk gene 212934788 212938148 . - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0308"; model_cov "1571"; model_pct "27.7"; chr1 rmsk exon 212934788 212934904 356 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "5521"; repFamily "ERVL"; repLeft "5406"; repStart "-146"; chr1 rmsk exon 212935383 212935980 1767 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "4929"; repFamily "ERVL"; repLeft "4310"; repStart "-738"; chr1 rmsk exon 212936194 212936475 798 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "1289"; repStart "-4106"; chr1 rmsk exon 212936779 212937024 798 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "1288"; repFamily "ERVL"; repLeft "1039"; repStart "-4379"; chr1 rmsk exon 212937633 212937807 251 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "922"; repFamily "ERVL"; repLeft "742"; repStart "-4745"; chr1 rmsk exon 212938027 212938148 279 - . gene_id "ERVLE_1q32.3"; transcript_id "ERVLE_1q32.3"; locus "ERVLE_1q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0308"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "285"; repStart "-5246"; ### HML3_1q32.3a ### chr1 rmsk gene 213025489 213031102 . - . gene_id "HML3_1q32.3a"; transcript_id "HML3_1q32.3a"; locus "HML3_1q32.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0020"; model_cov "5235"; model_pct "86.9"; chr1 rmsk exon 213025489 213025992 4268 - . gene_id "HML3_1q32.3a"; transcript_id "HML3_1q32.3a"; locus "HML3_1q32.3a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0020"; repClass "LTR"; repEnd "504"; repFamily "ERVK"; repLeft "1"; repStart "-9"; chr1 rmsk exon 213025993 213031102 43986 - . gene_id "HML3_1q32.3a"; transcript_id "HML3_1q32.3a"; locus "HML3_1q32.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0020"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "786"; repStart "0"; ### HML3_1q32.3b ### chr1 rmsk gene 213031167 213032441 . - . gene_id "HML3_1q32.3b"; transcript_id "HML3_1q32.3b"; locus "HML3_1q32.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0021"; model_cov "784"; model_pct "13.0"; chr1 rmsk exon 213031167 213031931 43986 - . gene_id "HML3_1q32.3b"; transcript_id "HML3_1q32.3b"; locus "HML3_1q32.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0021"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5237"; repStart "0"; chr1 rmsk exon 213031932 213032441 4238 - . gene_id "HML3_1q32.3b"; transcript_id "HML3_1q32.3b"; locus "HML3_1q32.3b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0021"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_1q32.3c ### chr1 rmsk gene 213590410 213592098 . - . gene_id "ERV316A3_1q32.3c"; transcript_id "ERV316A3_1q32.3c"; locus "ERV316A3_1q32.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0165"; model_cov "529"; model_pct "10.1"; chr1 rmsk exon 213590410 213590834 1468 - . gene_id "ERV316A3_1q32.3c"; transcript_id "ERV316A3_1q32.3c"; locus "ERV316A3_1q32.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0165"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr1 rmsk exon 213590838 213591341 1889 - . gene_id "ERV316A3_1q32.3c"; transcript_id "ERV316A3_1q32.3c"; locus "ERV316A3_1q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0165"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4697"; repStart "0"; chr1 rmsk exon 213591646 213592098 1447 - . gene_id "ERV316A3_1q32.3c"; transcript_id "ERV316A3_1q32.3c"; locus "ERV316A3_1q32.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0165"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "11"; repStart "-1"; ### ERV316A3_1q41a ### chr1 rmsk gene 214585874 214590346 . - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0166"; model_cov "2868"; model_pct "54.9"; chr1 rmsk exon 214585874 214586351 1457 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "21"; repStart "-5"; chr1 rmsk exon 214586416 214587175 2213 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "5139"; repFamily "ERVL"; repLeft "4382"; repStart "-87"; chr1 rmsk exon 214587957 214588704 2213 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "4381"; repFamily "ERVL"; repLeft "3678"; repStart "-845"; chr1 rmsk exon 214588723 214589262 666 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "2633"; repStart "-1943"; chr1 rmsk exon 214589323 214589746 913 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "1179"; repFamily "ERVL"; repLeft "725"; repStart "-4047"; chr1 rmsk exon 214590042 214590346 913 - . gene_id "ERV316A3_1q41a"; transcript_id "ERV316A3_1q41a"; locus "ERV316A3_1q41a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0166"; repClass "LTR"; repEnd "724"; repFamily "ERVL"; repLeft "420"; repStart "-4502"; ### ERVLE_1q41a ### chr1 rmsk gene 214758239 214758813 . - . gene_id "ERVLE_1q41a"; transcript_id "ERVLE_1q41a"; locus "ERVLE_1q41a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0309"; model_cov "596"; model_pct "10.5"; chr1 rmsk exon 214758239 214758813 1088 - . gene_id "ERVLE_1q41a"; transcript_id "ERVLE_1q41a"; locus "ERVLE_1q41a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0309"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "4687"; repStart "-384"; ### ERVLE_1q41b ### chr1 rmsk gene 214789777 214792645 . - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0310"; model_cov "1957"; model_pct "34.5"; chr1 rmsk exon 214789777 214789995 511 - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0310"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4441"; repStart "-1007"; chr1 rmsk exon 214790039 214790163 333 - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0310"; repClass "LTR"; repEnd "3575"; repFamily "ERVL"; repLeft "3453"; repStart "-2092"; chr1 rmsk exon 214790641 214791821 1658 - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0310"; repClass "LTR"; repEnd "3193"; repFamily "ERVL"; repLeft "2001"; repStart "-2474"; chr1 rmsk exon 214792207 214792457 275 - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0310"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "991"; repStart "-4424"; chr1 rmsk exon 214792473 214792645 253 - . gene_id "ERVLE_1q41b"; transcript_id "ERVLE_1q41b"; locus "ERVLE_1q41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0310"; repClass "LTR"; repEnd "937"; repFamily "ERVL"; repLeft "765"; repStart "-4730"; ### ERVLE_1q41c ### chr1 rmsk gene 214878764 214883538 . - . gene_id "ERVLE_1q41c"; transcript_id "ERVLE_1q41c"; locus "ERVLE_1q41c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0311"; model_cov "1554"; model_pct "27.4"; chr1 rmsk exon 214878764 214878882 329 - . gene_id "ERVLE_1q41c"; transcript_id "ERVLE_1q41c"; locus "ERVLE_1q41c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0311"; repClass "LTR"; repEnd "3095"; repFamily "ERVL"; repLeft "2967"; repStart "-2572"; chr1 rmsk exon 214880842 214882050 1182 - . gene_id "ERVLE_1q41c"; transcript_id "ERVLE_1q41c"; locus "ERVLE_1q41c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0311"; repClass "LTR"; repEnd "2911"; repFamily "ERVL"; repLeft "1668"; repStart "-2756"; chr1 rmsk exon 214883360 214883538 562 - . gene_id "ERVLE_1q41c"; transcript_id "ERVLE_1q41c"; locus "ERVLE_1q41c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0311"; repClass "LTR"; repEnd "1560"; repFamily "ERVL"; repLeft "1377"; repStart "-4107"; ### ERV316A3_1q41b ### chr1 rmsk gene 215248392 215250212 . - . gene_id "ERV316A3_1q41b"; transcript_id "ERV316A3_1q41b"; locus "ERV316A3_1q41b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0167"; model_cov "969"; model_pct "18.5"; chr1 rmsk exon 215248392 215248791 1455 - . gene_id "ERV316A3_1q41b"; transcript_id "ERV316A3_1q41b"; locus "ERV316A3_1q41b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0167"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "1"; repStart "-72"; chr1 rmsk exon 215248823 215249753 3050 - . gene_id "ERV316A3_1q41b"; transcript_id "ERV316A3_1q41b"; locus "ERV316A3_1q41b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0167"; repClass "LTR"; repEnd "5155"; repFamily "ERVL"; repLeft "4186"; repStart "-71"; chr1 rmsk exon 215250017 215250212 530 - . gene_id "ERV316A3_1q41b"; transcript_id "ERV316A3_1q41b"; locus "ERV316A3_1q41b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0167"; repClass "LTR"; repEnd "239"; repFamily "ERVL"; repLeft "46"; repStart "-241"; ### ERVLE_1q41d ### chr1 rmsk gene 215261600 215269127 . - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0312"; model_cov "4372"; model_pct "77.1"; chr1 rmsk exon 215261600 215261744 302 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "5515"; repStart "-5"; chr1 rmsk exon 215261768 215261980 1204 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "4620"; repFamily "ERVL"; repLeft "4433"; repStart "-1047"; chr1 rmsk exon 215262172 215262452 1204 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "4138"; repStart "-1235"; chr1 rmsk exon 215262586 215263266 2218 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "3402"; repStart "-1563"; chr1 rmsk exon 215263809 215264126 1117 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "3402"; repFamily "ERVL"; repLeft "3090"; repStart "-2265"; chr1 rmsk exon 215264477 215264711 1117 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "3089"; repFamily "ERVL"; repLeft "2836"; repStart "-2578"; chr1 rmsk exon 215265423 215265925 3993 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "2276"; repStart "-2877"; chr1 rmsk exon 215266215 215266987 3993 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "2275"; repFamily "ERVL"; repLeft "1498"; repStart "-3392"; chr1 rmsk exon 215267563 215267608 253 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "1441"; repStart "-4181"; chr1 rmsk exon 215267655 215268429 2388 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "1423"; repFamily "ERVL"; repLeft "662"; repStart "-4244"; chr1 rmsk exon 215268754 215269127 2388 - . gene_id "ERVLE_1q41d"; transcript_id "ERVLE_1q41d"; locus "ERVLE_1q41d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0312"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "281"; repStart "-5006"; ### ERVLE_1q41e ### chr1 rmsk gene 215358809 215360872 . + . gene_id "ERVLE_1q41e"; transcript_id "ERVLE_1q41e"; locus "ERVLE_1q41e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0314"; model_cov "2234"; model_pct "39.4"; chr1 rmsk exon 215358809 215359824 2051 + . gene_id "ERVLE_1q41e"; transcript_id "ERVLE_1q41e"; locus "ERVLE_1q41e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0314"; repClass "LTR"; repEnd "1152"; repFamily "ERVL"; repLeft "-4515"; repStart "60"; chr1 rmsk exon 215359811 215360872 2119 + . gene_id "ERVLE_1q41e"; transcript_id "ERVLE_1q41e"; locus "ERVLE_1q41e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0314"; repClass "LTR"; repEnd "2619"; repFamily "ERVL"; repLeft "-3048"; repStart "1477"; ### HERVH_1q41a ### chr1 rmsk gene 215410117 215415683 . - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0080"; model_cov "4726"; model_pct "61.3"; chr1 rmsk exon 215410117 215410563 3262 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 215410564 215410943 2516 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 215410942 215411169 1236 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr1 rmsk exon 215411167 215411725 3435 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4588"; repStart "-2564"; chr1 rmsk exon 215411715 215412133 2814 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "3500"; repStart "-3797"; chr1 rmsk exon 215412133 215412277 808 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 215412272 215415232 19548 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 215415235 215415683 3308 - . gene_id "HERVH_1q41a"; transcript_id "HERVH_1q41a"; locus "HERVH_1q41a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0080"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### LTR57_1q41 ### chr1 rmsk gene 215538917 215540507 . - . gene_id "LTR57_1q41"; transcript_id "LTR57_1q41"; locus "LTR57_1q41"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0015"; model_cov "1190"; model_pct "22.3"; chr1 rmsk exon 215538917 215540110 6855 - . gene_id "LTR57_1q41"; transcript_id "LTR57_1q41"; locus "LTR57_1q41"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0015"; repClass "LTR"; repEnd "1191"; repFamily "ERVL"; repLeft "1"; repStart "-4152"; chr1 rmsk exon 215540111 215540507 2461 - . gene_id "LTR57_1q41"; transcript_id "LTR57_1q41"; locus "LTR57_1q41"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0015"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "6"; repStart "0"; ### MER41_1q41a ### chr1 rmsk gene 215583131 215585190 . - . gene_id "MER41_1q41a"; transcript_id "MER41_1q41a"; locus "MER41_1q41a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0033"; model_cov "1394"; model_pct "23.4"; chr1 rmsk exon 215583131 215583661 3549 - . gene_id "MER41_1q41a"; transcript_id "MER41_1q41a"; locus "MER41_1q41a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0033"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr1 rmsk exon 215583662 215584977 8037 - . gene_id "MER41_1q41a"; transcript_id "MER41_1q41a"; locus "MER41_1q41a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0033"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4639"; repStart "0"; chr1 rmsk exon 215584973 215585057 501 - . gene_id "MER41_1q41a"; transcript_id "MER41_1q41a"; locus "MER41_1q41a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0033"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chr1 rmsk exon 215585058 215585190 926 - . gene_id "MER41_1q41a"; transcript_id "MER41_1q41a"; locus "MER41_1q41a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0033"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "503"; repStart "0"; ### HERVH_1q41b ### chr1 rmsk gene 216008143 216013869 . + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0081"; model_cov "4924"; model_pct "63.8"; chr1 rmsk exon 216008143 216008553 2673 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 216008556 216011399 16650 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 216011372 216011541 871 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3126"; chr1 rmsk exon 216011532 216011970 2923 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "-3783"; repStart "3492"; chr1 rmsk exon 216012139 216012204 519 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3927"; chr1 rmsk exon 216012208 216012864 4334 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 216012866 216013082 1352 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 216013081 216013458 2397 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 216013459 216013869 2764 + . gene_id "HERVH_1q41b"; transcript_id "HERVH_1q41b"; locus "HERVH_1q41b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0081"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_1q41c ### chr1 rmsk gene 216145601 216152688 . + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0082"; model_cov "7365"; model_pct "95.5"; chr1 rmsk exon 216145601 216146051 3458 + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0082"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 216146054 216148964 16648 + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0082"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 216148944 216149090 834 + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0082"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 216149081 216152206 23345 + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0082"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3492"; chr1 rmsk exon 216152207 216152688 3280 + . gene_id "HERVH_1q41c"; transcript_id "HERVH_1q41c"; locus "HERVH_1q41c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0082"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_1q41c ### chr1 rmsk gene 216193885 216195860 . + . gene_id "ERV316A3_1q41c"; transcript_id "ERV316A3_1q41c"; locus "ERV316A3_1q41c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0169"; model_cov "1362"; model_pct "26.1"; chr1 rmsk exon 216193885 216194131 724 + . gene_id "ERV316A3_1q41c"; transcript_id "ERV316A3_1q41c"; locus "ERV316A3_1q41c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0169"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "107"; chr1 rmsk exon 216194495 216195860 3249 + . gene_id "ERV316A3_1q41c"; transcript_id "ERV316A3_1q41c"; locus "ERV316A3_1q41c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0169"; repClass "LTR"; repEnd "3912"; repFamily "ERVL"; repLeft "-1314"; repStart "2550"; ### MER41_1q41b ### chr1 rmsk gene 216343947 216349846 . + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0034"; model_cov "5119"; model_pct "86.1"; chr1 rmsk exon 216343947 216344053 724 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0034"; repClass "LTR"; repEnd "593"; repFamily "ERV1"; repLeft "-41"; repStart "481"; chr1 rmsk exon 216344517 216344554 283 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0034"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "597"; chr1 rmsk exon 216344555 216346279 4971 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0034"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1"; chr1 rmsk exon 216346271 216347249 6174 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0034"; repClass "LTR"; repEnd "3160"; repFamily "ERV1"; repLeft "-2786"; repStart "2162"; chr1 rmsk exon 216347241 216349336 13160 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0034"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "3838"; chr1 rmsk exon 216349338 216349846 3272 + . gene_id "MER41_1q41b"; transcript_id "MER41_1q41b"; locus "MER41_1q41b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0034"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### PRIMA41_1q41 ### chr1 rmsk gene 216480766 216484870 . + . gene_id "PRIMA41_1q41"; transcript_id "PRIMA41_1q41"; locus "PRIMA41_1q41"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0010"; model_cov "3244"; model_pct "41.8"; chr1 rmsk exon 216480766 216480973 1133 + . gene_id "PRIMA41_1q41"; transcript_id "PRIMA41_1q41"; locus "PRIMA41_1q41"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0010"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "0"; repStart "403"; chr1 rmsk exon 216481088 216483697 1731 + . gene_id "PRIMA41_1q41"; transcript_id "PRIMA41_1q41"; locus "PRIMA41_1q41"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0010"; repClass "LTR"; repEnd "3852"; repFamily "ERV1"; repLeft "-3904"; repStart "1142"; chr1 rmsk exon 216483902 216484418 1494 + . gene_id "PRIMA41_1q41"; transcript_id "PRIMA41_1q41"; locus "PRIMA41_1q41"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0010"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "7222"; chr1 rmsk exon 216484421 216484870 3019 + . gene_id "PRIMA41_1q41"; transcript_id "PRIMA41_1q41"; locus "PRIMA41_1q41"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0010"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-111"; repStart "1"; ### ERVLE_1q41f ### chr1 rmsk gene 217233383 217237669 . + . gene_id "ERVLE_1q41f"; transcript_id "ERVLE_1q41f"; locus "ERVLE_1q41f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0318"; model_cov "4139"; model_pct "73.0"; chr1 rmsk exon 217233383 217234737 1287 + . gene_id "ERVLE_1q41f"; transcript_id "ERVLE_1q41f"; locus "ERVLE_1q41f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0318"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "-2961"; repStart "1337"; chr1 rmsk exon 217234940 217237669 5994 + . gene_id "ERVLE_1q41f"; transcript_id "ERVLE_1q41f"; locus "ERVLE_1q41f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0318"; repClass "LTR"; repEnd "5153"; repFamily "ERVL"; repLeft "-514"; repStart "2383"; ### ERVLB4_1q41a ### chr1 rmsk gene 217310053 217316028 . + . gene_id "ERVLB4_1q41a"; transcript_id "ERVLB4_1q41a"; locus "ERVLB4_1q41a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0118"; model_cov "5590"; model_pct "97.8"; chr1 rmsk exon 217310053 217315360 29493 + . gene_id "ERVLB4_1q41a"; transcript_id "ERVLB4_1q41a"; locus "ERVLB4_1q41a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0118"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "-119"; repStart "5"; chr1 rmsk exon 217315451 217316028 2790 + . gene_id "ERVLB4_1q41a"; transcript_id "ERVLB4_1q41a"; locus "ERVLB4_1q41a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0118"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_1q41a ### chr1 rmsk gene 218007367 218009084 . + . gene_id "MER4_1q41a"; transcript_id "MER4_1q41a"; locus "MER4_1q41a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0059"; model_cov "822"; model_pct "12.5"; chr1 rmsk exon 218007367 218007815 3142 + . gene_id "MER4_1q41a"; transcript_id "MER4_1q41a"; locus "MER4_1q41a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0059"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 218007819 218008286 2740 + . gene_id "MER4_1q41a"; transcript_id "MER4_1q41a"; locus "MER4_1q41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0059"; repClass "LTR"; repEnd "544"; repFamily "ERV1"; repLeft "-6054"; repStart "1"; chr1 rmsk exon 218008872 218009084 1029 + . gene_id "MER4_1q41a"; transcript_id "MER4_1q41a"; locus "MER4_1q41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0059"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "-5774"; repStart "545"; ### MER4_1q41b ### chr1 rmsk gene 218015314 218023674 . + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0060"; model_cov "5577"; model_pct "84.5"; chr1 rmsk exon 218015314 218016996 9733 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0060"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "-4054"; repStart "865"; chr1 rmsk exon 218018276 218019290 9733 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0060"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "2545"; chr1 rmsk exon 218019287 218020086 16415 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0060"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "-1936"; repStart "3839"; chr1 rmsk exon 218021046 218022173 16415 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0060"; repClass "LTR"; repEnd "5830"; repFamily "ERV1"; repLeft "-768"; repStart "4663"; chr1 rmsk exon 218022470 218023220 16415 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0060"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5831"; chr1 rmsk exon 218023222 218023674 3070 + . gene_id "MER4_1q41b"; transcript_id "MER4_1q41b"; locus "MER4_1q41b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0060"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_1q41g ### chr1 rmsk gene 218469519 218471099 . + . gene_id "ERVLE_1q41g"; transcript_id "ERVLE_1q41g"; locus "ERVLE_1q41g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0319"; model_cov "1332"; model_pct "23.5"; chr1 rmsk exon 218469519 218470780 4543 + . gene_id "ERVLE_1q41g"; transcript_id "ERVLE_1q41g"; locus "ERVLE_1q41g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0319"; repClass "LTR"; repEnd "4880"; repFamily "ERVL"; repLeft "-787"; repStart "3548"; chr1 rmsk exon 218470788 218471099 968 + . gene_id "ERVLE_1q41g"; transcript_id "ERVLE_1q41g"; locus "ERVLE_1q41g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0319"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "-4"; repStart "322"; ### HERVH_1q41d ### chr1 rmsk gene 218594310 218600065 . - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0084"; model_cov "4846"; model_pct "62.8"; chr1 rmsk exon 218594310 218594614 1961 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "7645"; repFamily "ERV1"; repLeft "7324"; repStart "-68"; chr1 rmsk exon 218594615 218594831 1324 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 218594833 218595492 3989 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 218595495 218595994 3195 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 218595985 218596134 882 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 218596114 218599632 16192 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 218599635 218600065 2643 - . gene_id "HERVH_1q41d"; transcript_id "HERVH_1q41d"; locus "HERVH_1q41d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0084"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVEA_1q41 ### chr1 rmsk gene 218748962 218755422 . - . gene_id "HERVEA_1q41"; transcript_id "HERVEA_1q41"; locus "HERVEA_1q41"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0008"; model_cov "5777"; model_pct "73.6"; chr1 rmsk exon 218748962 218749208 1243 - . gene_id "HERVEA_1q41"; transcript_id "HERVEA_1q41"; locus "HERVEA_1q41"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE_a-int_0008"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "263"; repStart "0"; chr1 rmsk exon 218749209 218750735 9328 - . gene_id "HERVEA_1q41"; transcript_id "HERVEA_1q41"; locus "HERVEA_1q41"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0008"; repClass "LTR"; repEnd "5995"; repFamily "ERV1"; repLeft "4457"; repStart "-1852"; chr1 rmsk exon 218750733 218755012 21487 - . gene_id "HERVEA_1q41"; transcript_id "HERVEA_1q41"; locus "HERVEA_1q41"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0008"; repClass "LTR"; repEnd "4240"; repFamily "ERV1"; repLeft "1"; repStart "-3607"; chr1 rmsk exon 218755014 218755422 1786 - . gene_id "HERVEA_1q41"; transcript_id "HERVEA_1q41"; locus "HERVEA_1q41"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE_a-int_0008"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "83"; repStart "-1"; ### HERVL40_1q41 ### chr1 rmsk gene 219218772 219223420 . - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0024"; model_cov "2454"; model_pct "44.4"; chr1 rmsk exon 219218772 219219013 721 - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0024"; repClass "LTR"; repEnd "5433"; repFamily "ERVL"; repLeft "5279"; repStart "-97"; chr1 rmsk exon 219219900 219221114 3290 - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0024"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "3527"; repStart "-937"; chr1 rmsk exon 219221104 219221764 2375 - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0024"; repClass "LTR"; repEnd "3197"; repFamily "ERVL"; repLeft "2522"; repStart "-2333"; chr1 rmsk exon 219222262 219222462 774 - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0024"; repClass "LTR"; repEnd "777"; repFamily "ERVL"; repLeft "571"; repStart "-4753"; chr1 rmsk exon 219223080 219223420 979 - . gene_id "HERVL40_1q41"; transcript_id "HERVL40_1q41"; locus "HERVL40_1q41"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0024"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "46"; repStart "-5131"; ### ERVLE_1q41h ### chr1 rmsk gene 219319779 219320433 . - . gene_id "ERVLE_1q41h"; transcript_id "ERVLE_1q41h"; locus "ERVLE_1q41h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0320"; model_cov "666"; model_pct "11.8"; chr1 rmsk exon 219319779 219320433 1193 - . gene_id "ERVLE_1q41h"; transcript_id "ERVLE_1q41h"; locus "ERVLE_1q41h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0320"; repClass "LTR"; repEnd "5576"; repFamily "ERVL"; repLeft "4910"; repStart "-91"; ### MER34B_1q41 ### chr1 rmsk gene 219390975 219392351 . + . gene_id "MER34B_1q41"; transcript_id "MER34B_1q41"; locus "MER34B_1q41"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0028"; model_cov "951"; model_pct "17.8"; chr1 rmsk exon 219390975 219391785 1670 + . gene_id "MER34B_1q41"; transcript_id "MER34B_1q41"; locus "MER34B_1q41"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0028"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "-4696"; repStart "41"; chr1 rmsk exon 219392021 219392351 1306 + . gene_id "MER34B_1q41"; transcript_id "MER34B_1q41"; locus "MER34B_1q41"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0028"; repClass "LTR"; repEnd "1265"; repFamily "ERV1"; repLeft "-4091"; repStart "933"; ### ERVLE_1q41i ### chr1 rmsk gene 219861925 219863570 . + . gene_id "ERVLE_1q41i"; transcript_id "ERVLE_1q41i"; locus "ERVLE_1q41i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0321"; model_cov "1380"; model_pct "24.4"; chr1 rmsk exon 219861925 219862973 1201 + . gene_id "ERVLE_1q41i"; transcript_id "ERVLE_1q41i"; locus "ERVLE_1q41i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0321"; repClass "LTR"; repEnd "1963"; repFamily "ERVL"; repLeft "-3704"; repStart "894"; chr1 rmsk exon 219863309 219863570 1201 + . gene_id "ERVLE_1q41i"; transcript_id "ERVLE_1q41i"; locus "ERVLE_1q41i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0321"; repClass "LTR"; repEnd "2275"; repFamily "ERVL"; repLeft "-3392"; repStart "1964"; ### ERVLE_1q41j ### chr1 rmsk gene 220360232 220361591 . + . gene_id "ERVLE_1q41j"; transcript_id "ERVLE_1q41j"; locus "ERVLE_1q41j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0323"; model_cov "843"; model_pct "14.9"; chr1 rmsk exon 220360232 220360790 1832 + . gene_id "ERVLE_1q41j"; transcript_id "ERVLE_1q41j"; locus "ERVLE_1q41j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0323"; repClass "LTR"; repEnd "3485"; repFamily "ERVL"; repLeft "-2182"; repStart "2905"; chr1 rmsk exon 220360923 220361095 760 + . gene_id "ERVLE_1q41j"; transcript_id "ERVLE_1q41j"; locus "ERVLE_1q41j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0323"; repClass "LTR"; repEnd "4248"; repFamily "ERVL"; repLeft "-1419"; repStart "4089"; chr1 rmsk exon 220361487 220361591 760 + . gene_id "ERVLE_1q41j"; transcript_id "ERVLE_1q41j"; locus "ERVLE_1q41j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0323"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "-1314"; repStart "4249"; ### ERVL_1q41 ### chr1 rmsk gene 220551443 220555214 . - . gene_id "ERVL_1q41"; transcript_id "ERVL_1q41"; locus "ERVL_1q41"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0024"; model_cov "3601"; model_pct "62.5"; chr1 rmsk exon 220551443 220551556 316 - . gene_id "ERVL_1q41"; transcript_id "ERVL_1q41"; locus "ERVL_1q41"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0024"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "5654"; repStart "-2"; chr1 rmsk exon 220551648 220554324 11473 - . gene_id "ERVL_1q41"; transcript_id "ERVL_1q41"; locus "ERVL_1q41"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0024"; repClass "LTR"; repEnd "5512"; repFamily "ERVL"; repLeft "2712"; repStart "-245"; chr1 rmsk exon 220554542 220555214 11473 - . gene_id "ERVL_1q41"; transcript_id "ERVL_1q41"; locus "ERVL_1q41"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0024"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "2011"; repStart "-3046"; ### MER4_1q41c ### chr1 rmsk gene 220716061 220717659 . + . gene_id "MER4_1q41c"; transcript_id "MER4_1q41c"; locus "MER4_1q41c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0061"; model_cov "1362"; model_pct "20.6"; chr1 rmsk exon 220716061 220717322 7202 + . gene_id "MER4_1q41c"; transcript_id "MER4_1q41c"; locus "MER4_1q41c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0061"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "5231"; chr1 rmsk exon 220717334 220717659 2202 + . gene_id "MER4_1q41c"; transcript_id "MER4_1q41c"; locus "MER4_1q41c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0061"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-123"; repStart "1"; ### HARLEQUIN_1q41 ### chr1 rmsk gene 220718008 220722869 . + . gene_id "HARLEQUIN_1q41"; transcript_id "HARLEQUIN_1q41"; locus "HARLEQUIN_1q41"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0021"; model_cov "3993"; model_pct "57.9"; chr1 rmsk exon 220718008 220718504 2517 + . gene_id "HARLEQUIN_1q41"; transcript_id "HARLEQUIN_1q41"; locus "HARLEQUIN_1q41"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0021"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 220718883 220719959 8319 + . gene_id "HARLEQUIN_1q41"; transcript_id "HARLEQUIN_1q41"; locus "HARLEQUIN_1q41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0021"; repClass "LTR"; repEnd "1334"; repFamily "ERV1"; repLeft "-5562"; repStart "263"; chr1 rmsk exon 220719953 220720955 7249 + . gene_id "HARLEQUIN_1q41"; transcript_id "HARLEQUIN_1q41"; locus "HARLEQUIN_1q41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0021"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1573"; chr1 rmsk exon 220720955 220722869 15214 + . gene_id "HARLEQUIN_1q41"; transcript_id "HARLEQUIN_1q41"; locus "HARLEQUIN_1q41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0021"; repClass "LTR"; repEnd "5273"; repFamily "ERV1"; repLeft "-1623"; repStart "3352"; ### ERVLE_1q41k ### chr1 rmsk gene 220953358 220954790 . + . gene_id "ERVLE_1q41k"; transcript_id "ERVLE_1q41k"; locus "ERVLE_1q41k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0324"; model_cov "1407"; model_pct "24.8"; chr1 rmsk exon 220953358 220954196 1562 + . gene_id "ERVLE_1q41k"; transcript_id "ERVLE_1q41k"; locus "ERVLE_1q41k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0324"; repClass "LTR"; repEnd "861"; repFamily "ERVL"; repLeft "-4806"; repStart "5"; chr1 rmsk exon 220954230 220954790 1561 + . gene_id "ERVLE_1q41k"; transcript_id "ERVLE_1q41k"; locus "ERVLE_1q41k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0324"; repClass "LTR"; repEnd "4704"; repFamily "ERVL"; repLeft "-963"; repStart "4153"; ### ERVLE_1q41l ### chr1 rmsk gene 221217954 221219708 . + . gene_id "ERVLE_1q41l"; transcript_id "ERVLE_1q41l"; locus "ERVLE_1q41l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0325"; model_cov "1133"; model_pct "20.0"; chr1 rmsk exon 221217954 221218641 1388 + . gene_id "ERVLE_1q41l"; transcript_id "ERVLE_1q41l"; locus "ERVLE_1q41l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0325"; repClass "LTR"; repEnd "4358"; repFamily "ERVL"; repLeft "-1309"; repStart "3627"; chr1 rmsk exon 221219000 221219194 294 + . gene_id "ERVLE_1q41l"; transcript_id "ERVLE_1q41l"; locus "ERVLE_1q41l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0325"; repClass "LTR"; repEnd "4837"; repFamily "ERVL"; repLeft "-830"; repStart "4640"; chr1 rmsk exon 221219502 221219708 294 + . gene_id "ERVLE_1q41l"; transcript_id "ERVLE_1q41l"; locus "ERVLE_1q41l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0325"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "-624"; repStart "4838"; ### ERVLB4_1q41b ### chr1 rmsk gene 221316978 221319839 . + . gene_id "ERVLB4_1q41b"; transcript_id "ERVLB4_1q41b"; locus "ERVLB4_1q41b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0120"; model_cov "2320"; model_pct "40.6"; chr1 rmsk exon 221316978 221317056 498 + . gene_id "ERVLB4_1q41b"; transcript_id "ERVLB4_1q41b"; locus "ERVLB4_1q41b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0120"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "-475"; repStart "1"; chr1 rmsk exon 221317057 221319315 13123 + . gene_id "ERVLB4_1q41b"; transcript_id "ERVLB4_1q41b"; locus "ERVLB4_1q41b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0120"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3394"; chr1 rmsk exon 221319316 221319839 2662 + . gene_id "ERVLB4_1q41b"; transcript_id "ERVLB4_1q41b"; locus "ERVLB4_1q41b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0120"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_1q41d ### chr1 rmsk gene 221595403 221598541 . - . gene_id "ERV316A3_1q41d"; transcript_id "ERV316A3_1q41d"; locus "ERV316A3_1q41d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0171"; model_cov "2773"; model_pct "53.1"; chr1 rmsk exon 221595403 221595801 1404 - . gene_id "ERV316A3_1q41d"; transcript_id "ERV316A3_1q41d"; locus "ERV316A3_1q41d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0171"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr1 rmsk exon 221595882 221598208 2472 - . gene_id "ERV316A3_1q41d"; transcript_id "ERV316A3_1q41d"; locus "ERV316A3_1q41d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0171"; repClass "LTR"; repEnd "5148"; repFamily "ERVL"; repLeft "2688"; repStart "-78"; chr1 rmsk exon 221598237 221598541 738 - . gene_id "ERV316A3_1q41d"; transcript_id "ERV316A3_1q41d"; locus "ERV316A3_1q41d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0171"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "2181"; repStart "-2732"; ### ERVLE_1q41m ### chr1 rmsk gene 221693912 221698681 . + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0327"; model_cov "3338"; model_pct "58.9"; chr1 rmsk exon 221693912 221694232 6615 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "2501"; repFamily "ERVL"; repLeft "-3166"; repStart "2185"; chr1 rmsk exon 221694455 221696034 6615 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "4124"; repFamily "ERVL"; repLeft "-1543"; repStart "2502"; chr1 rmsk exon 221696036 221697128 5042 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "5401"; repFamily "ERVL"; repLeft "-266"; repStart "4265"; chr1 rmsk exon 221697564 221697678 5042 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "5516"; repFamily "ERVL"; repLeft "-151"; repStart "5402"; chr1 rmsk exon 221697959 221698098 5042 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5517"; chr1 rmsk exon 221698274 221698681 766 + . gene_id "ERVLE_1q41m"; transcript_id "ERVLE_1q41m"; locus "ERVLE_1q41m"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0327"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "198"; ### HERVH_1q41e ### chr1 rmsk gene 221947781 221952102 . + . gene_id "HERVH_1q41e"; transcript_id "HERVH_1q41e"; locus "HERVH_1q41e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0085"; model_cov "3621"; model_pct "46.9"; chr1 rmsk exon 221947781 221948249 3761 + . gene_id "HERVH_1q41e"; transcript_id "HERVH_1q41e"; locus "HERVH_1q41e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0085"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 221948251 221948654 1004 + . gene_id "HERVH_1q41e"; transcript_id "HERVH_1q41e"; locus "HERVH_1q41e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0085"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "2"; chr1 rmsk exon 221948764 221952102 10656 + . gene_id "HERVH_1q41e"; transcript_id "HERVH_1q41e"; locus "HERVH_1q41e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0085"; repClass "LTR"; repEnd "3767"; repFamily "ERV1"; repLeft "-3946"; repStart "590"; ### LTR23_1q41 ### chr1 rmsk gene 221958153 221960186 . - . gene_id "LTR23_1q41"; transcript_id "LTR23_1q41"; locus "LTR23_1q41"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0016"; model_cov "956"; model_pct "18.7"; chr1 rmsk exon 221958153 221958164 358 - . gene_id "LTR23_1q41"; transcript_id "LTR23_1q41"; locus "LTR23_1q41"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0016"; repClass "LTR"; repEnd "2111"; repFamily "ERV1"; repLeft "2102"; repStart "-3012"; chr1 rmsk exon 221958636 221958862 418 - . gene_id "LTR23_1q41"; transcript_id "LTR23_1q41"; locus "LTR23_1q41"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0016"; repClass "LTR"; repEnd "2101"; repFamily "ERV1"; repLeft "1813"; repStart "-3022"; chr1 rmsk exon 221959143 221959773 1236 - . gene_id "LTR23_1q41"; transcript_id "LTR23_1q41"; locus "LTR23_1q41"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0016"; repClass "LTR"; repEnd "1831"; repFamily "ERV1"; repLeft "1339"; repStart "-3292"; chr1 rmsk exon 221960017 221960186 548 - . gene_id "LTR23_1q41"; transcript_id "LTR23_1q41"; locus "LTR23_1q41"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0016"; repClass "LTR"; repEnd "36"; repFamily "ERV1"; repLeft "-131"; repStart "-5087"; ### HERVH_1q41f ### chr1 rmsk gene 221965924 221971633 . + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0086"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 221965924 221966356 2753 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 221966357 221969342 20632 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 221969337 221969484 862 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 221969475 221969977 3465 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 221969980 221970597 2834 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 221970599 221970815 1352 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 221970814 221971192 2574 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 221971193 221971633 2702 + . gene_id "HERVH_1q41f"; transcript_id "HERVH_1q41f"; locus "HERVH_1q41f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0086"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_1q41g ### chr1 rmsk gene 221973078 221978957 . - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0087"; model_cov "4896"; model_pct "63.5"; chr1 rmsk exon 221973078 221973528 3610 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 221973529 221973904 2574 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr1 rmsk exon 221973907 221974130 1367 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 221974132 221974793 4294 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 221974796 221975290 3327 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr1 rmsk exon 221975290 221975437 813 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 221975432 221978506 20259 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 221978509 221978957 3548 - . gene_id "HERVH_1q41g"; transcript_id "HERVH_1q41g"; locus "HERVH_1q41g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0087"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_1q41e ### chr1 rmsk gene 222288336 222293533 . + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0172"; model_cov "3042"; model_pct "58.2"; chr1 rmsk exon 222288336 222288469 398 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "0"; repStart "356"; chr1 rmsk exon 222289012 222290820 2180 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "3758"; repFamily "ERVL"; repLeft "-1468"; repStart "1858"; chr1 rmsk exon 222291275 222291902 2011 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "4408"; repFamily "ERVL"; repLeft "-818"; repStart "3755"; chr1 rmsk exon 222292210 222292683 2011 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "4847"; repFamily "ERVL"; repLeft "-379"; repStart "4409"; chr1 rmsk exon 222292941 222292992 258 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "-96"; repStart "5079"; chr1 rmsk exon 222293099 222293533 728 + . gene_id "ERV316A3_1q41e"; transcript_id "ERV316A3_1q41e"; locus "ERV316A3_1q41e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0172"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-53"; repStart "14"; ### HML6_1q41 ### chr1 rmsk gene 222916841 222919617 . + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0005"; model_cov "1780"; model_pct "24.7"; chr1 rmsk exon 222916841 222917272 3284 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 222917374 222917554 628 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr1 rmsk exon 222917610 222917701 379 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "626"; repFamily "ERVK"; repLeft "-6576"; repStart "535"; chr1 rmsk exon 222917706 222918665 5336 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-4934"; repStart "1280"; chr1 rmsk exon 222918665 222919125 2619 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "6702"; repFamily "ERVK"; repLeft "-500"; repStart "6286"; chr1 rmsk exon 222919101 222919167 447 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "7120"; repFamily "ERVK"; repLeft "-82"; repStart "7052"; chr1 rmsk exon 222919188 222919617 3296 + . gene_id "HML6_1q41"; transcript_id "HML6_1q41"; locus "HML6_1q41"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0005"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_1q41h ### chr1 rmsk gene 223024396 223030156 . - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0088"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 223024396 223024847 3445 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 223024848 223025222 2665 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 223025221 223025436 1423 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 223025438 223026094 4236 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 223026097 223026601 3400 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 223026592 223026741 1008 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 223026736 223029699 20913 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 223029702 223030156 3492 - . gene_id "HERVH_1q41h"; transcript_id "HERVH_1q41h"; locus "HERVH_1q41h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0088"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVP71A_1q41 ### chr1 rmsk gene 223207049 223210084 . + . gene_id "HERVP71A_1q41"; transcript_id "HERVP71A_1q41"; locus "HERVP71A_1q41"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0008"; model_cov "2361"; model_pct "31.1"; chr1 rmsk exon 223207049 223207650 3485 + . gene_id "HERVP71A_1q41"; transcript_id "HERVP71A_1q41"; locus "HERVP71A_1q41"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0008"; repClass "LTR"; repEnd "4700"; repFamily "ERV1"; repLeft "-2890"; repStart "4102"; chr1 rmsk exon 223207649 223207933 7432 + . gene_id "HERVP71A_1q41"; transcript_id "HERVP71A_1q41"; locus "HERVP71A_1q41"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0008"; repClass "LTR"; repEnd "5439"; repFamily "ERV1"; repLeft "-2151"; repStart "5142"; chr1 rmsk exon 223208015 223209415 7432 + . gene_id "HERVP71A_1q41"; transcript_id "HERVP71A_1q41"; locus "HERVP71A_1q41"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0008"; repClass "LTR"; repEnd "6906"; repFamily "ERV1"; repLeft "-684"; repStart "5440"; chr1 rmsk exon 223209477 223210084 4296 + . gene_id "HERVP71A_1q41"; transcript_id "HERVP71A_1q41"; locus "HERVP71A_1q41"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0008"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_1q42.12a ### chr1 rmsk gene 224762700 224763526 . - . gene_id "ERV316A3_1q42.12a"; transcript_id "ERV316A3_1q42.12a"; locus "ERV316A3_1q42.12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0173"; model_cov "696"; model_pct "13.3"; chr1 rmsk exon 224762700 224762907 781 - . gene_id "ERV316A3_1q42.12a"; transcript_id "ERV316A3_1q42.12a"; locus "ERV316A3_1q42.12a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0173"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "1"; repStart "-241"; chr1 rmsk exon 224762919 224763526 1003 - . gene_id "ERV316A3_1q42.12a"; transcript_id "ERV316A3_1q42.12a"; locus "ERV316A3_1q42.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0173"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "4499"; repStart "-31"; ### HERVH_1q42.12a ### chr1 rmsk gene 224839936 224846082 . - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0089"; model_cov "5624"; model_pct "72.9"; chr1 rmsk exon 224839936 224840327 2079 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr1 rmsk exon 224840328 224840700 2439 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr1 rmsk exon 224840701 224840920 1428 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 224840922 224842660 8101 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4551"; repStart "-1290"; chr1 rmsk exon 224842651 224842800 1014 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 224842780 224845681 14378 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr1 rmsk exon 224845684 224846082 2356 - . gene_id "HERVH_1q42.12a"; transcript_id "HERVH_1q42.12a"; locus "HERVH_1q42.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0089"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; ### HERVH_1q42.12b ### chr1 rmsk gene 224885458 224893550 . + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0090"; model_cov "7270"; model_pct "94.3"; chr1 rmsk exon 224885458 224885790 1733 + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0090"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "127"; chr1 rmsk exon 224885791 224886219 1328 + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0090"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr1 rmsk exon 224886278 224889650 11012 + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0090"; repClass "LTR"; repEnd "3783"; repFamily "ERV1"; repLeft "-3930"; repStart "590"; chr1 rmsk exon 224889639 224893248 18929 + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0090"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4081"; chr1 rmsk exon 224893285 224893550 1436 + . gene_id "HERVH_1q42.12b"; transcript_id "HERVH_1q42.12b"; locus "HERVH_1q42.12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0090"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-1"; repStart "127"; ### HML5_1q42.12 ### chr1 rmsk gene 225221660 225229271 . + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0013"; model_cov "5310"; model_pct "77.7"; chr1 rmsk exon 225221660 225222129 2511 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 225222130 225222331 1344 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "213"; repFamily "ERVK"; repLeft "-6624"; repStart "1"; chr1 rmsk exon 225222761 225223341 4156 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "-6043"; repStart "218"; chr1 rmsk exon 225223325 225226602 33589 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "5631"; repFamily "ERVK"; repLeft "-1206"; repStart "2314"; chr1 rmsk exon 225227592 225228797 33589 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5632"; chr1 rmsk exon 225228798 225229271 2665 + . gene_id "HML5_1q42.12"; transcript_id "HML5_1q42.12"; locus "HML5_1q42.12"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0013"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_1q42.12 ### chr1 rmsk gene 225248755 225249390 . + . gene_id "ERVLB4_1q42.12"; transcript_id "ERVLB4_1q42.12"; locus "ERVLB4_1q42.12"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0122"; model_cov "711"; model_pct "12.4"; chr1 rmsk exon 225248755 225249390 1269 + . gene_id "ERVLB4_1q42.12"; transcript_id "ERVLB4_1q42.12"; locus "ERVLB4_1q42.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0122"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "-3270"; repStart "1733"; ### ERV316A3_1q42.12b ### chr1 rmsk gene 225716020 225725256 . + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0174"; model_cov "5278"; model_pct "100.0"; chr1 rmsk exon 225716020 225716448 1436 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-7"; repStart "2"; chr1 rmsk exon 225716456 225716817 1390 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "-4621"; repStart "231"; chr1 rmsk exon 225717486 225718452 2638 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "1541"; repFamily "ERVL"; repLeft "-3685"; repStart "534"; chr1 rmsk exon 225718750 225719080 6052 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "2152"; repFamily "ERVL"; repLeft "-3074"; repStart "1772"; chr1 rmsk exon 225719364 225719739 6052 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "2154"; repFamily "ERVL"; repLeft "-3072"; repStart "1787"; chr1 rmsk exon 225720034 225720337 6052 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "2449"; repFamily "ERVL"; repLeft "-2777"; repStart "2155"; chr1 rmsk exon 225720633 225722159 6052 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "3799"; repFamily "ERVL"; repLeft "-1427"; repStart "1962"; chr1 rmsk exon 225722133 225722353 936 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "4352"; repFamily "ERVL"; repLeft "-874"; repStart "4120"; chr1 rmsk exon 225723756 225723817 893 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "-812"; repStart "4353"; chr1 rmsk exon 225723850 225723992 2677 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "4640"; repFamily "ERVL"; repLeft "-586"; repStart "4498"; chr1 rmsk exon 225724277 225724863 2677 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4641"; chr1 rmsk exon 225724865 225725256 1650 + . gene_id "ERV316A3_1q42.12b"; transcript_id "ERV316A3_1q42.12b"; locus "ERV316A3_1q42.12b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0174"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### HML1_1q42.12 ### chr1 rmsk gene 225791551 225801391 . - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0006"; model_cov "6271"; model_pct "100.0"; chr1 rmsk exon 225791551 225792063 2985 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "523"; repFamily "ERVK"; repLeft "17"; repStart "-85"; chr1 rmsk exon 225792067 225792377 2849 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "6056"; repFamily "ERVK"; repLeft "5775"; repStart "-40"; chr1 rmsk exon 225792682 225794466 2849 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "5774"; repFamily "ERVK"; repLeft "3949"; repStart "-322"; chr1 rmsk exon 225794456 225795405 7335 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "4310"; repFamily "ERVK"; repLeft "3350"; repStart "-1786"; chr1 rmsk exon 225796908 225798945 15280 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "3363"; repFamily "ERVK"; repLeft "1352"; repStart "-2733"; chr1 rmsk exon 225798945 225799166 8552 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "1199"; repFamily "ERVK"; repLeft "994"; repStart "-4897"; chr1 rmsk exon 225799496 225800308 8552 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "993"; repFamily "ERVK"; repLeft "181"; repStart "-5103"; chr1 rmsk exon 225800613 225800788 8552 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "180"; repFamily "ERVK"; repLeft "3"; repStart "-5916"; chr1 rmsk exon 225800789 225801391 3165 - . gene_id "HML1_1q42.12"; transcript_id "HML1_1q42.12"; locus "HML1_1q42.12"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0006"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "17"; repStart "0"; ### ERVLE_1q42.12a ### chr1 rmsk gene 226085781 226087362 . - . gene_id "ERVLE_1q42.12a"; transcript_id "ERVLE_1q42.12a"; locus "ERVLE_1q42.12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0331"; model_cov "1425"; model_pct "25.1"; chr1 rmsk exon 226085781 226086572 2434 - . gene_id "ERVLE_1q42.12a"; transcript_id "ERVLE_1q42.12a"; locus "ERVLE_1q42.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0331"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "3546"; repStart "-1247"; chr1 rmsk exon 226086859 226087362 2335 - . gene_id "ERVLE_1q42.12a"; transcript_id "ERVLE_1q42.12a"; locus "ERVLE_1q42.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0331"; repClass "LTR"; repEnd "3545"; repFamily "ERVL"; repLeft "2994"; repStart "-2122"; ### ERVLE_1q42.12b ### chr1 rmsk gene 226357508 226358354 . - . gene_id "ERVLE_1q42.12b"; transcript_id "ERVLE_1q42.12b"; locus "ERVLE_1q42.12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0332"; model_cov "667"; model_pct "11.8"; chr1 rmsk exon 226357508 226357984 1367 - . gene_id "ERVLE_1q42.12b"; transcript_id "ERVLE_1q42.12b"; locus "ERVLE_1q42.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0332"; repClass "LTR"; repEnd "5271"; repFamily "ERVL"; repLeft "4783"; repStart "-396"; chr1 rmsk exon 226358180 226358354 553 - . gene_id "ERVLE_1q42.12b"; transcript_id "ERVLE_1q42.12b"; locus "ERVLE_1q42.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0332"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "4359"; repStart "-1129"; ### HUERSP3_1q42.12 ### chr1 rmsk gene 226491405 226494787 . - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0011"; model_cov "1402"; model_pct "15.7"; chr1 rmsk exon 226491405 226491979 3520 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "1"; repStart "-84"; chr1 rmsk exon 226491980 226492181 1296 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8717"; repStart "-1"; chr1 rmsk exon 226493485 226493544 351 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1791"; repStart "-7069"; chr1 rmsk exon 226493542 226494343 3464 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "1652"; repFamily "ERV1"; repLeft "748"; repStart "-7267"; chr1 rmsk exon 226494347 226494493 830 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "2060"; repFamily "ERV1"; repLeft "1910"; repStart "-6859"; chr1 rmsk exon 226494500 226494594 283 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "1733"; repStart "-7098"; chr1 rmsk exon 226494596 226494787 1139 - . gene_id "HUERSP3_1q42.12"; transcript_id "HUERSP3_1q42.12"; locus "HUERSP3_1q42.12"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0011"; repClass "LTR"; repEnd "642"; repFamily "ERV1"; repLeft "445"; repStart "-2"; ### HERVL66_1q42.12 ### chr1 rmsk gene 226535600 226543018 . - . gene_id "HERVL66_1q42.12"; transcript_id "HERVL66_1q42.12"; locus "HERVL66_1q42.12"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0006"; model_cov "4376"; model_pct "100.0"; chr1 rmsk exon 226535600 226536120 3654 - . gene_id "HERVL66_1q42.12"; transcript_id "HERVL66_1q42.12"; locus "HERVL66_1q42.12"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0006"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr1 rmsk exon 226536121 226540454 26890 - . gene_id "HERVL66_1q42.12"; transcript_id "HERVL66_1q42.12"; locus "HERVL66_1q42.12"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0006"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "461"; repStart "0"; chr1 rmsk exon 226541957 226542460 3315 - . gene_id "HERVL66_1q42.12"; transcript_id "HERVL66_1q42.12"; locus "HERVL66_1q42.12"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0006"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-3820"; chr1 rmsk exon 226542462 226543018 3636 - . gene_id "HERVL66_1q42.12"; transcript_id "HERVL66_1q42.12"; locus "HERVL66_1q42.12"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0006"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER61_1q42.12 ### chr1 rmsk gene 226611190 226616622 . - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0036"; model_cov "5753"; model_pct "100.0"; chr1 rmsk exon 226611190 226611486 1658 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0036"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr1 rmsk exon 226611487 226611744 12864 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4957"; repStart "0"; chr1 rmsk exon 226612056 226613673 12864 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "4166"; repFamily "ERV1"; repLeft "2212"; repStart "-1051"; chr1 rmsk exon 226613676 226615137 6131 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "2941"; repFamily "ERV1"; repLeft "244"; repStart "-2276"; chr1 rmsk exon 226615435 226615539 2138 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "2332"; repFamily "ERV1"; repLeft "2222"; repStart "-2885"; chr1 rmsk exon 226615538 226615572 271 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1328"; repStart "-3855"; chr1 rmsk exon 226615618 226616300 3028 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0036"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "2"; repStart "-4517"; chr1 rmsk exon 226616304 226616622 1793 - . gene_id "MER61_1q42.12"; transcript_id "MER61_1q42.12"; locus "MER61_1q42.12"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0036"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1q42.13a ### chr1 rmsk gene 226833503 226838404 . + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0091"; model_cov "3954"; model_pct "51.3"; chr1 rmsk exon 226833503 226833944 2842 + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0091"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 226833945 226834368 931 + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0091"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr1 rmsk exon 226834435 226837538 16349 + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0091"; repClass "LTR"; repEnd "3858"; repFamily "ERV1"; repLeft "-3855"; repStart "792"; chr1 rmsk exon 226837537 226837969 2938 + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0091"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr1 rmsk exon 226837970 226838404 2561 + . gene_id "HERVH_1q42.13a"; transcript_id "HERVH_1q42.13a"; locus "HERVH_1q42.13a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0091"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_1q42.13 ### chr1 rmsk gene 226847392 226856641 . + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0064"; model_cov "4941"; model_pct "74.9"; chr1 rmsk exon 226847392 226847807 3093 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0064"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "55"; chr1 rmsk exon 226847834 226848407 3224 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-5980"; repStart "6"; chr1 rmsk exon 226848400 226848461 417 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "-662"; repFamily "ERV1"; repLeft "-7260"; repStart "-723"; chr1 rmsk exon 226848592 226848692 1469 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "1080"; repFamily "ERV1"; repLeft "-5518"; repStart "993"; chr1 rmsk exon 226849002 226849251 1469 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "1081"; chr1 rmsk exon 226849250 226849942 4210 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1771"; chr1 rmsk exon 226850172 226850312 2391 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "2900"; repFamily "ERV1"; repLeft "-3698"; repStart "2750"; chr1 rmsk exon 226850627 226850934 2391 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "3238"; repFamily "ERV1"; repLeft "-3360"; repStart "2901"; chr1 rmsk exon 226851469 226851556 2391 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-3268"; repStart "3239"; chr1 rmsk exon 226851543 226851990 8970 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "4375"; repFamily "ERV1"; repLeft "-2223"; repStart "3912"; chr1 rmsk exon 226852296 226853229 8970 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "5318"; repFamily "ERV1"; repLeft "-1280"; repStart "4376"; chr1 rmsk exon 226855071 226856309 8740 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0064"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5311"; chr1 rmsk exon 226856311 226856641 1993 + . gene_id "MER4_1q42.13"; transcript_id "MER4_1q42.13"; locus "MER4_1q42.13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0064"; repClass "LTR"; repEnd "351"; repFamily "ERV1"; repLeft "-121"; repStart "1"; ### ERV316A3_1q42.13a ### chr1 rmsk gene 227353706 227355425 . - . gene_id "ERV316A3_1q42.13a"; transcript_id "ERV316A3_1q42.13a"; locus "ERV316A3_1q42.13a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0176"; model_cov "1684"; model_pct "32.2"; chr1 rmsk exon 227353706 227354097 728 - . gene_id "ERV316A3_1q42.13a"; transcript_id "ERV316A3_1q42.13a"; locus "ERV316A3_1q42.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0176"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "1941"; repStart "-2891"; chr1 rmsk exon 227354151 227355425 1374 - . gene_id "ERV316A3_1q42.13a"; transcript_id "ERV316A3_1q42.13a"; locus "ERV316A3_1q42.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0176"; repClass "LTR"; repEnd "2216"; repFamily "ERVL"; repLeft "926"; repStart "-3010"; ### ERV316A3_1q42.13b ### chr1 rmsk gene 227357275 227360947 . - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0177"; model_cov "2312"; model_pct "44.2"; chr1 rmsk exon 227357275 227357674 967 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr1 rmsk exon 227357731 227358253 4223 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "4676"; repStart "-52"; chr1 rmsk exon 227358546 227359577 4223 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "4675"; repFamily "ERVL"; repLeft "3600"; repStart "-551"; chr1 rmsk exon 227359712 227359966 4223 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "3280"; repFamily "ERVL"; repLeft "2969"; repStart "-1946"; chr1 rmsk exon 227359974 227360295 680 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "382"; repStart "-4506"; chr1 rmsk exon 227360436 227360525 302 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "309"; repStart "-4827"; chr1 rmsk exon 227360587 227360947 599 - . gene_id "ERV316A3_1q42.13b"; transcript_id "ERV316A3_1q42.13b"; locus "ERV316A3_1q42.13b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0177"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "6"; repStart "-2"; ### ERVLB4_1q42.13a ### chr1 rmsk gene 227444112 227445934 . + . gene_id "ERVLB4_1q42.13a"; transcript_id "ERVLB4_1q42.13a"; locus "ERVLB4_1q42.13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0123"; model_cov "1105"; model_pct "19.3"; chr1 rmsk exon 227444112 227445179 7121 + . gene_id "ERVLB4_1q42.13a"; transcript_id "ERVLB4_1q42.13a"; locus "ERVLB4_1q42.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0123"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4609"; chr1 rmsk exon 227445180 227445567 1998 + . gene_id "ERVLB4_1q42.13a"; transcript_id "ERVLB4_1q42.13a"; locus "ERVLB4_1q42.13a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0123"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "-61"; repStart "1"; chr1 rmsk exon 227445872 227445934 1998 + . gene_id "ERVLB4_1q42.13a"; transcript_id "ERVLB4_1q42.13a"; locus "ERVLB4_1q42.13a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0123"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "455"; ### PRIMA41_1q42.13a ### chr1 rmsk gene 227495272 227496668 . - . gene_id "PRIMA41_1q42.13a"; transcript_id "PRIMA41_1q42.13a"; locus "PRIMA41_1q42.13a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0011"; model_cov "1532"; model_pct "19.8"; chr1 rmsk exon 227495272 227496668 7841 - . gene_id "PRIMA41_1q42.13a"; transcript_id "PRIMA41_1q42.13a"; locus "PRIMA41_1q42.13a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0011"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4631"; repStart "-1593"; ### PRIMA41_1q42.13b ### chr1 rmsk gene 227496775 227499185 . - . gene_id "PRIMA41_1q42.13b"; transcript_id "PRIMA41_1q42.13b"; locus "PRIMA41_1q42.13b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0012"; model_cov "1773"; model_pct "22.9"; chr1 rmsk exon 227496775 227496874 7841 - . gene_id "PRIMA41_1q42.13b"; transcript_id "PRIMA41_1q42.13b"; locus "PRIMA41_1q42.13b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0012"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "6052"; repStart "-1593"; chr1 rmsk exon 227497528 227499185 7841 - . gene_id "PRIMA41_1q42.13b"; transcript_id "PRIMA41_1q42.13b"; locus "PRIMA41_1q42.13b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0012"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "2856"; repStart "-3238"; ### PRIMA41_1q42.13c ### chr1 rmsk gene 227500566 227506052 . + . gene_id "PRIMA41_1q42.13c"; transcript_id "PRIMA41_1q42.13c"; locus "PRIMA41_1q42.13c"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0013"; model_cov "4893"; model_pct "63.1"; chr1 rmsk exon 227500566 227503796 12933 + . gene_id "PRIMA41_1q42.13c"; transcript_id "PRIMA41_1q42.13c"; locus "PRIMA41_1q42.13c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0013"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "1269"; chr1 rmsk exon 227504450 227506052 12933 + . gene_id "PRIMA41_1q42.13c"; transcript_id "PRIMA41_1q42.13c"; locus "PRIMA41_1q42.13c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0013"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "4519"; ### HERV3_1q42.13 ### chr1 rmsk gene 227556186 227558349 . + . gene_id "HERV3_1q42.13"; transcript_id "HERV3_1q42.13"; locus "HERV3_1q42.13"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0006"; model_cov "1578"; model_pct "18.7"; chr1 rmsk exon 227556186 227557772 7741 + . gene_id "HERV3_1q42.13"; transcript_id "HERV3_1q42.13"; locus "HERV3_1q42.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0006"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "6848"; chr1 rmsk exon 227557774 227558349 2273 + . gene_id "HERV3_1q42.13"; transcript_id "HERV3_1q42.13"; locus "HERV3_1q42.13"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0006"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_1q42.13a ### chr1 rmsk gene 227589454 227596654 . - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0022"; model_cov "7177"; model_pct "100.0"; chr1 rmsk exon 227589454 227589915 3712 - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0022"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 227589916 227594859 30757 - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0022"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "863"; repStart "0"; chr1 rmsk exon 227594850 227595243 4873 - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0022"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "865"; repStart "-5487"; chr1 rmsk exon 227595290 227595885 4873 - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0022"; repClass "LTR"; repEnd "864"; repFamily "ERV1"; repLeft "264"; repStart "-6032"; chr1 rmsk exon 227596270 227596654 2671 - . gene_id "HARLEQUIN_1q42.13a"; transcript_id "HARLEQUIN_1q42.13a"; locus "HARLEQUIN_1q42.13a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0022"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_1q42.13 ### chr1 rmsk gene 227616464 227618120 . + . gene_id "ERVL_1q42.13"; transcript_id "ERVL_1q42.13"; locus "ERVL_1q42.13"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0025"; model_cov "1494"; model_pct "26.0"; chr1 rmsk exon 227616464 227616681 1119 + . gene_id "ERVL_1q42.13"; transcript_id "ERVL_1q42.13"; locus "ERVL_1q42.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0025"; repClass "LTR"; repEnd "3059"; repFamily "ERVL"; repLeft "-2698"; repStart "2831"; chr1 rmsk exon 227616875 227618120 6328 + . gene_id "ERVL_1q42.13"; transcript_id "ERVL_1q42.13"; locus "ERVL_1q42.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0025"; repClass "LTR"; repEnd "4336"; repFamily "ERVL"; repLeft "-1421"; repStart "3070"; ### HERVW_1q42.13 ### chr1 rmsk gene 227624514 227633559 . - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0023"; model_cov "7011"; model_pct "81.3"; chr1 rmsk exon 227624514 227625275 5602 - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0023"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 227625276 227625567 2438 - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0023"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr1 rmsk exon 227625558 227631559 49718 - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0023"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "1537"; repStart "-1078"; chr1 rmsk exon 227632080 227632799 5081 - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0023"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "2"; repStart "-7915"; chr1 rmsk exon 227632800 227633559 5544 - . gene_id "HERVW_1q42.13"; transcript_id "HERVW_1q42.13"; locus "HERVW_1q42.13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0023"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_1q42.13 ### chr1 rmsk gene 227635565 227641349 . - . gene_id "HERVH48_1q42.13"; transcript_id "HERVH48_1q42.13"; locus "HERVH48_1q42.13"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0004"; model_cov "5150"; model_pct "77.4"; chr1 rmsk exon 227635565 227635891 2246 - . gene_id "HERVH48_1q42.13"; transcript_id "HERVH48_1q42.13"; locus "HERVH48_1q42.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0004"; repClass "LTR"; repEnd "343"; repFamily "ERV1"; repLeft "1"; repStart "-64"; chr1 rmsk exon 227635892 227636872 7438 - . gene_id "HERVH48_1q42.13"; transcript_id "HERVH48_1q42.13"; locus "HERVH48_1q42.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0004"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "5650"; repStart "0"; chr1 rmsk exon 227636846 227641227 23051 - . gene_id "HERVH48_1q42.13"; transcript_id "HERVH48_1q42.13"; locus "HERVH48_1q42.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0004"; repClass "LTR"; repEnd "4272"; repFamily "ERV1"; repLeft "126"; repStart "-2382"; chr1 rmsk exon 227641228 227641349 912 - . gene_id "HERVH48_1q42.13"; transcript_id "HERVH48_1q42.13"; locus "HERVH48_1q42.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0004"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "281"; repStart "0"; ### HARLEQUIN_1q42.13c ### chr1 rmsk gene 227677124 227686201 . + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; category "tandem*"; intModel "Harlequin-int"; locid "Harlequin-int_0024"; model_cov "5998"; model_pct "87.0"; chr1 rmsk exon 227677124 227678871 13645 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "6276"; repFamily "ERV1"; repLeft "-620"; repStart "4496"; chr1 rmsk exon 227678886 227679179 2330 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "6887"; repFamily "ERV1"; repLeft "-9"; repStart "6595"; chr1 rmsk exon 227679250 227679711 3742 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 227679712 227681200 7587 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "-5474"; repStart "1"; chr1 rmsk exon 227681200 227684496 26392 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "5098"; repFamily "ERV1"; repLeft "-1798"; repStart "1807"; chr1 rmsk exon 227684496 227685791 9646 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5610"; chr1 rmsk exon 227685794 227686201 3513 + . gene_id "HARLEQUIN_1q42.13c"; transcript_id "HARLEQUIN_1q42.13c"; locus "HARLEQUIN_1q42.13c"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0024"; repClass "LTR"; repEnd "416"; repFamily "ERV1"; repLeft "-47"; repStart "3"; ### HARLEQUIN_1q42.13b ### chr1 rmsk gene 227717792 227719674 . + . gene_id "HARLEQUIN_1q42.13b"; transcript_id "HARLEQUIN_1q42.13b"; locus "HARLEQUIN_1q42.13b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0025"; model_cov "1362"; model_pct "19.8"; chr1 rmsk exon 227717792 227719065 9498 + . gene_id "HARLEQUIN_1q42.13b"; transcript_id "HARLEQUIN_1q42.13b"; locus "HARLEQUIN_1q42.13b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0025"; repClass "LTR"; repEnd "5710"; repFamily "ERV1"; repLeft "-1186"; repStart "4465"; chr1 rmsk exon 227719060 227719180 744 + . gene_id "HARLEQUIN_1q42.13b"; transcript_id "HARLEQUIN_1q42.13b"; locus "HARLEQUIN_1q42.13b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0025"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6779"; chr1 rmsk exon 227719181 227719674 2647 + . gene_id "HARLEQUIN_1q42.13b"; transcript_id "HARLEQUIN_1q42.13b"; locus "HARLEQUIN_1q42.13b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0025"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_1q42.13 ### chr1 rmsk gene 227719675 227721313 . - . gene_id "HERVIP10FH_1q42.13"; transcript_id "HERVIP10FH_1q42.13"; locus "HERVIP10FH_1q42.13"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0012"; model_cov "768"; model_pct "15.1"; chr1 rmsk exon 227719675 227719895 637 - . gene_id "HERVIP10FH_1q42.13"; transcript_id "HERVIP10FH_1q42.13"; locus "HERVIP10FH_1q42.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0012"; repClass "LTR"; repEnd "898"; repFamily "ERV1"; repLeft "672"; repStart "-4204"; chr1 rmsk exon 227720182 227720421 502 - . gene_id "HERVIP10FH_1q42.13"; transcript_id "HERVIP10FH_1q42.13"; locus "HERVIP10FH_1q42.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0012"; repClass "LTR"; repEnd "-1917"; repFamily "ERV1"; repLeft "-2165"; repStart "-7019"; chr1 rmsk exon 227720505 227720814 2000 - . gene_id "HERVIP10FH_1q42.13"; transcript_id "HERVIP10FH_1q42.13"; locus "HERVIP10FH_1q42.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0012"; repClass "LTR"; repEnd "-2206"; repFamily "ERV1"; repLeft "-2500"; repStart "-7308"; chr1 rmsk exon 227720815 227721313 3543 - . gene_id "HERVIP10FH_1q42.13"; transcript_id "HERVIP10FH_1q42.13"; locus "HERVIP10FH_1q42.13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0012"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_1q42.13c ### chr1 rmsk gene 227865345 227868077 . + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0178"; model_cov "2200"; model_pct "42.1"; chr1 rmsk exon 227865345 227865849 453 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "1847"; repFamily "ERVL"; repLeft "-3379"; repStart "1395"; chr1 rmsk exon 227865931 227866055 292 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "2713"; repFamily "ERVL"; repLeft "-2513"; repStart "2589"; chr1 rmsk exon 227866107 227866235 270 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "-2295"; repStart "2801"; chr1 rmsk exon 227866247 227866407 252 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "3121"; repFamily "ERVL"; repLeft "-2105"; repStart "2954"; chr1 rmsk exon 227866406 227867166 1560 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "4006"; repFamily "ERVL"; repLeft "-1220"; repStart "2983"; chr1 rmsk exon 227867744 227868077 783 + . gene_id "ERV316A3_1q42.13c"; transcript_id "ERV316A3_1q42.13c"; locus "ERV316A3_1q42.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0178"; repClass "LTR"; repEnd "4625"; repFamily "ERVL"; repLeft "-601"; repStart "4321"; ### MER34B_1q42.13 ### chr1 rmsk gene 228132055 228133945 . + . gene_id "MER34B_1q42.13"; transcript_id "MER34B_1q42.13"; locus "MER34B_1q42.13"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0030"; model_cov "1386"; model_pct "25.9"; chr1 rmsk exon 228132055 228132398 510 + . gene_id "MER34B_1q42.13"; transcript_id "MER34B_1q42.13"; locus "MER34B_1q42.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0030"; repClass "LTR"; repEnd "2555"; repFamily "ERV1"; repLeft "-2801"; repStart "2086"; chr1 rmsk exon 228132385 228132656 2257 + . gene_id "MER34B_1q42.13"; transcript_id "MER34B_1q42.13"; locus "MER34B_1q42.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0030"; repClass "LTR"; repEnd "2907"; repFamily "ERV1"; repLeft "-2449"; repStart "2669"; chr1 rmsk exon 228132969 228133289 2257 + . gene_id "MER34B_1q42.13"; transcript_id "MER34B_1q42.13"; locus "MER34B_1q42.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0030"; repClass "LTR"; repEnd "3262"; repFamily "ERV1"; repLeft "-2094"; repStart "2908"; chr1 rmsk exon 228133601 228133945 2257 + . gene_id "MER34B_1q42.13"; transcript_id "MER34B_1q42.13"; locus "MER34B_1q42.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0030"; repClass "LTR"; repEnd "3588"; repFamily "ERV1"; repLeft "-1768"; repStart "3263"; ### HERVL_1q42.13 ### chr1 rmsk gene 228250669 228253090 . - . gene_id "HERVL_1q42.13"; transcript_id "HERVL_1q42.13"; locus "HERVL_1q42.13"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0113"; model_cov "2463"; model_pct "43.6"; chr1 rmsk exon 228250669 228253090 18343 - . gene_id "HERVL_1q42.13"; transcript_id "HERVL_1q42.13"; locus "HERVL_1q42.13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0113"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "2765"; repStart "-426"; ### MER101_1q42.13a ### chr1 rmsk gene 228648618 228650136 . + . gene_id "MER101_1q42.13a"; transcript_id "MER101_1q42.13a"; locus "MER101_1q42.13a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0037"; model_cov "1010"; model_pct "15.2"; chr1 rmsk exon 228648618 228648707 355 + . gene_id "MER101_1q42.13a"; transcript_id "MER101_1q42.13a"; locus "MER101_1q42.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0037"; repClass "LTR"; repEnd "3010"; repFamily "ERV1"; repLeft "-3629"; repStart "2919"; chr1 rmsk exon 228649166 228650136 2782 + . gene_id "MER101_1q42.13a"; transcript_id "MER101_1q42.13a"; locus "MER101_1q42.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0037"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "2997"; ### HERVH_1q42.13b ### chr1 rmsk gene 228676559 228682714 . - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0092"; model_cov "5004"; model_pct "64.9"; chr1 rmsk exon 228676559 228676991 3667 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 228676992 228677550 3688 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr1 rmsk exon 228677521 228677808 1564 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "6043"; repFamily "ERV1"; repLeft "5747"; repStart "-1670"; chr1 rmsk exon 228677809 228678753 6769 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "3964"; repStart "-2803"; chr1 rmsk exon 228678748 228679065 2358 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3419"; repStart "-3977"; chr1 rmsk exon 228679395 228679464 2358 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "3418"; repFamily "ERV1"; repLeft "3358"; repStart "-4295"; chr1 rmsk exon 228679465 228682352 6881 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chr1 rmsk exon 228682353 228682714 2639 - . gene_id "HERVH_1q42.13b"; transcript_id "HERVH_1q42.13b"; locus "HERVH_1q42.13b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0092"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "125"; repStart "0"; ### HERVH_1q42.13c ### chr1 rmsk gene 228947424 228951887 . + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0093"; model_cov "3715"; model_pct "48.2"; chr1 rmsk exon 228947424 228947857 2669 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 228947858 228948120 2048 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "263"; repFamily "ERV1"; repLeft "-7450"; repStart "1"; chr1 rmsk exon 228948094 228949637 10815 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1456"; chr1 rmsk exon 228949632 228949779 872 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 228949770 228950272 3452 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 228950275 228950905 3891 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 228950907 228951123 1340 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 228951122 228951500 2602 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 228951501 228951887 2427 + . gene_id "HERVH_1q42.13c"; transcript_id "HERVH_1q42.13c"; locus "HERVH_1q42.13c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0093"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "23"; ### ERV316A3_1q42.13d ### chr1 rmsk gene 229141459 229145532 . + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0179"; model_cov "2834"; model_pct "54.2"; chr1 rmsk exon 229141459 229141754 293 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "-4648"; repStart "265"; chr1 rmsk exon 229142161 229142354 359 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "1099"; repFamily "ERVL"; repLeft "-4127"; repStart "909"; chr1 rmsk exon 229143008 229143076 359 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "1167"; repFamily "ERVL"; repLeft "-4059"; repStart "1100"; chr1 rmsk exon 229143091 229143388 685 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "2258"; repFamily "ERVL"; repLeft "-2968"; repStart "1953"; chr1 rmsk exon 229143419 229143807 1018 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "3112"; repFamily "ERVL"; repLeft "-2114"; repStart "2720"; chr1 rmsk exon 229143909 229145324 3325 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "4214"; repFamily "ERVL"; repLeft "-1012"; repStart "2740"; chr1 rmsk exon 229145442 229145532 424 + . gene_id "ERV316A3_1q42.13d"; transcript_id "ERV316A3_1q42.13d"; locus "ERV316A3_1q42.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0179"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "-633"; repStart "4500"; ### HERVH_1q42.13d ### chr1 rmsk gene 229174258 229180176 . + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0094"; model_cov "4916"; model_pct "63.7"; chr1 rmsk exon 229174258 229174711 3484 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 229174729 229174780 434 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "398"; chr1 rmsk exon 229174781 229177850 21209 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 229177830 229177976 917 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 229177967 229178471 3450 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 229178474 229179135 4508 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 229179137 229179352 1351 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 229179351 229179726 2553 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 229179727 229180176 3495 + . gene_id "HERVH_1q42.13d"; transcript_id "HERVH_1q42.13d"; locus "HERVH_1q42.13d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0094"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_1q42.13e ### chr1 rmsk gene 229412418 229418665 . + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0095"; model_cov "5630"; model_pct "73.0"; chr1 rmsk exon 229412418 229412815 2954 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 229412820 229415776 19247 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "3"; chr1 rmsk exon 229415749 229415920 875 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3126"; chr1 rmsk exon 229415911 229417633 8271 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4551"; chr1 rmsk exon 229417635 229417842 1130 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 229417841 229418220 2515 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr1 rmsk exon 229418221 229418665 3479 + . gene_id "HERVH_1q42.13e"; transcript_id "HERVH_1q42.13e"; locus "HERVH_1q42.13e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0095"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_1q42.13e ### chr1 rmsk gene 229573473 229574907 . - . gene_id "ERV316A3_1q42.13e"; transcript_id "ERV316A3_1q42.13e"; locus "ERV316A3_1q42.13e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0180"; model_cov "1446"; model_pct "27.7"; chr1 rmsk exon 229573473 229574907 4405 - . gene_id "ERV316A3_1q42.13e"; transcript_id "ERV316A3_1q42.13e"; locus "ERV316A3_1q42.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0180"; repClass "LTR"; repEnd "3973"; repFamily "ERVL"; repLeft "2527"; repStart "-1253"; ### ERVLB4_1q42.13b ### chr1 rmsk gene 229604400 229605948 . + . gene_id "ERVLB4_1q42.13b"; transcript_id "ERVLB4_1q42.13b"; locus "ERVLB4_1q42.13b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0126"; model_cov "820"; model_pct "14.4"; chr1 rmsk exon 229604400 229604944 4631 + . gene_id "ERVLB4_1q42.13b"; transcript_id "ERVLB4_1q42.13b"; locus "ERVLB4_1q42.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0126"; repClass "LTR"; repEnd "5455"; repFamily "ERVL"; repLeft "-259"; repStart "4893"; chr1 rmsk exon 229605259 229605521 4631 + . gene_id "ERVLB4_1q42.13b"; transcript_id "ERVLB4_1q42.13b"; locus "ERVLB4_1q42.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0126"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5456"; chr1 rmsk exon 229605522 229605948 2009 + . gene_id "ERVLB4_1q42.13b"; transcript_id "ERVLB4_1q42.13b"; locus "ERVLB4_1q42.13b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0126"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-5"; repStart "1"; ### MER101_1q42.13b ### chr1 rmsk gene 229823919 229828752 . + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0038"; model_cov "4286"; model_pct "64.6"; chr1 rmsk exon 229823919 229824075 806 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0038"; repClass "LTR"; repEnd "167"; repFamily "ERV1"; repLeft "-307"; repStart "11"; chr1 rmsk exon 229824318 229824544 842 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0038"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "253"; chr1 rmsk exon 229824546 229824738 1026 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0038"; repClass "LTR"; repEnd "212"; repFamily "ERV1"; repLeft "-6427"; repStart "1"; chr1 rmsk exon 229824776 229825200 2441 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0038"; repClass "LTR"; repEnd "848"; repFamily "ERV1"; repLeft "-5791"; repStart "426"; chr1 rmsk exon 229825359 229825508 732 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0038"; repClass "LTR"; repEnd "1007"; repFamily "ERV1"; repLeft "-5632"; repStart "856"; chr1 rmsk exon 229826458 229828752 2630 + . gene_id "MER101_1q42.13b"; transcript_id "MER101_1q42.13b"; locus "MER101_1q42.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0038"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-891"; repStart "2246"; ### MER101_1q42.13c ### chr1 rmsk gene 229829321 229833252 . + . gene_id "MER101_1q42.13c"; transcript_id "MER101_1q42.13c"; locus "MER101_1q42.13c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0039"; model_cov "2267"; model_pct "34.1"; chr1 rmsk exon 229829321 229829416 296 + . gene_id "MER101_1q42.13c"; transcript_id "MER101_1q42.13c"; locus "MER101_1q42.13c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0039"; repClass "LTR"; repEnd "3956"; repFamily "ERV1"; repLeft "-2683"; repStart "3860"; chr1 rmsk exon 229829705 229830472 2918 + . gene_id "MER101_1q42.13c"; transcript_id "MER101_1q42.13c"; locus "MER101_1q42.13c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0039"; repClass "LTR"; repEnd "4546"; repFamily "ERV1"; repLeft "-2093"; repStart "3273"; chr1 rmsk exon 229831920 229832788 5203 + . gene_id "MER101_1q42.13c"; transcript_id "MER101_1q42.13c"; locus "MER101_1q42.13c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0039"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "5740"; chr1 rmsk exon 229832799 229833252 1464 + . gene_id "MER101_1q42.13c"; transcript_id "MER101_1q42.13c"; locus "MER101_1q42.13c"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0039"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "19"; ### ERV316A3_1q42.13f ### chr1 rmsk gene 229887855 229890725 . + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0181"; model_cov "2505"; model_pct "47.9"; chr1 rmsk exon 229887855 229888208 498 + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0181"; repClass "LTR"; repEnd "344"; repFamily "ERVL"; repLeft "-4882"; repStart "-31"; chr1 rmsk exon 229888414 229889357 746 + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0181"; repClass "LTR"; repEnd "2122"; repFamily "ERVL"; repLeft "-3104"; repStart "976"; chr1 rmsk exon 229889456 229889896 952 + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0181"; repClass "LTR"; repEnd "2378"; repFamily "ERVL"; repLeft "-2848"; repStart "1906"; chr1 rmsk exon 229890231 229890617 952 + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0181"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "2379"; chr1 rmsk exon 229890593 229890725 423 + . gene_id "ERV316A3_1q42.13f"; transcript_id "ERV316A3_1q42.13f"; locus "ERV316A3_1q42.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0181"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "-2656"; repStart "2425"; ### ERV316A3_1q42.2a ### chr1 rmsk gene 230541931 230546466 . + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0183"; model_cov "2445"; model_pct "46.8"; chr1 rmsk exon 230541931 230542128 455 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "-3432"; repStart "1600"; chr1 rmsk exon 230542137 230542560 1292 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "2594"; repFamily "ERVL"; repLeft "-2632"; repStart "2176"; chr1 rmsk exon 230542557 230542596 1153 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "-2439"; repStart "2744"; chr1 rmsk exon 230542892 230543180 1153 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2788"; chr1 rmsk exon 230544274 230544881 1687 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "-1486"; repStart "3184"; chr1 rmsk exon 230544969 230545147 728 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "4078"; repFamily "ERVL"; repLeft "-1148"; repStart "3886"; chr1 rmsk exon 230545176 230545607 695 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "4607"; repFamily "ERVL"; repLeft "-619"; repStart "4156"; chr1 rmsk exon 230545606 230545904 902 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-204"; repStart "4728"; chr1 rmsk exon 230546068 230546466 793 + . gene_id "ERV316A3_1q42.2a"; transcript_id "ERV316A3_1q42.2a"; locus "ERV316A3_1q42.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0183"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "10"; ### ERVLE_1q42.2a ### chr1 rmsk gene 230582388 230583608 . - . gene_id "ERVLE_1q42.2a"; transcript_id "ERVLE_1q42.2a"; locus "ERVLE_1q42.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0336"; model_cov "1137"; model_pct "20.1"; chr1 rmsk exon 230582388 230582670 797 - . gene_id "ERVLE_1q42.2a"; transcript_id "ERVLE_1q42.2a"; locus "ERVLE_1q42.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0336"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "5012"; repStart "-319"; chr1 rmsk exon 230582796 230582954 641 - . gene_id "ERVLE_1q42.2a"; transcript_id "ERVLE_1q42.2a"; locus "ERVLE_1q42.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0336"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4928"; repStart "-583"; chr1 rmsk exon 230582950 230583493 2231 - . gene_id "ERVLE_1q42.2a"; transcript_id "ERVLE_1q42.2a"; locus "ERVLE_1q42.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0336"; repClass "LTR"; repEnd "2683"; repFamily "ERVL"; repLeft "2130"; repStart "-2984"; chr1 rmsk exon 230583528 230583608 423 - . gene_id "ERVLE_1q42.2a"; transcript_id "ERVLE_1q42.2a"; locus "ERVLE_1q42.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0336"; repClass "LTR"; repEnd "2034"; repFamily "ERVL"; repLeft "1942"; repStart "-3633"; ### HERVH_1q42.2a ### chr1 rmsk gene 230601216 230609094 . + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0096"; model_cov "7015"; model_pct "91.0"; chr1 rmsk exon 230601216 230601646 2707 + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0096"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 230601649 230604929 22468 + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0096"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr1 rmsk exon 230604920 230605422 3467 + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0096"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 230605425 230608660 25200 + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0096"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4488"; chr1 rmsk exon 230608661 230609094 2658 + . gene_id "HERVH_1q42.2a"; transcript_id "HERVH_1q42.2a"; locus "HERVH_1q42.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0096"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "-21"; ### ERVLE_1q42.2b ### chr1 rmsk gene 231515904 231517493 . - . gene_id "ERVLE_1q42.2b"; transcript_id "ERVLE_1q42.2b"; locus "ERVLE_1q42.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0337"; model_cov "635"; model_pct "11.2"; chr1 rmsk exon 231515904 231516335 1118 - . gene_id "ERVLE_1q42.2b"; transcript_id "ERVLE_1q42.2b"; locus "ERVLE_1q42.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0337"; repClass "LTR"; repEnd "2351"; repFamily "ERVL"; repLeft "1912"; repStart "-3316"; chr1 rmsk exon 231516609 231516670 289 - . gene_id "ERVLE_1q42.2b"; transcript_id "ERVLE_1q42.2b"; locus "ERVLE_1q42.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0337"; repClass "LTR"; repEnd "1518"; repFamily "ERVL"; repLeft "1457"; repStart "-4149"; chr1 rmsk exon 231517359 231517493 263 - . gene_id "ERVLE_1q42.2b"; transcript_id "ERVLE_1q42.2b"; locus "ERVLE_1q42.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0337"; repClass "LTR"; repEnd "545"; repFamily "ERVL"; repLeft "410"; repStart "-5122"; ### HERVH_1q42.2b ### chr1 rmsk gene 231829672 231835648 . - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0097"; model_cov "5629"; model_pct "73.0"; chr1 rmsk exon 231829672 231830084 2761 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 231830085 231830462 2382 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 231830461 231830676 1383 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 231830678 231832404 8469 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr1 rmsk exon 231832395 231832542 917 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 231832540 231835234 15897 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "1"; repStart "-4729"; chr1 rmsk exon 231835237 231835648 2861 - . gene_id "HERVH_1q42.2b"; transcript_id "HERVH_1q42.2b"; locus "HERVH_1q42.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0097"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_1q42.2c ### chr1 rmsk gene 232118115 232123945 . + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0098"; model_cov "4914"; model_pct "63.7"; chr1 rmsk exon 232118115 232118565 3595 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 232118568 232121599 19510 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr1 rmsk exon 232121579 232121728 938 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 232121719 232122222 3167 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr1 rmsk exon 232122225 232122886 4086 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 232122888 232123116 1248 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 232123117 232123494 2445 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 232123495 232123945 3542 + . gene_id "HERVH_1q42.2c"; transcript_id "HERVH_1q42.2c"; locus "HERVH_1q42.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0098"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_1q42.2c ### chr1 rmsk gene 232153536 232154835 . - . gene_id "ERVLE_1q42.2c"; transcript_id "ERVLE_1q42.2c"; locus "ERVLE_1q42.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0339"; model_cov "771"; model_pct "13.6"; chr1 rmsk exon 232153536 232153828 825 - . gene_id "ERVLE_1q42.2c"; transcript_id "ERVLE_1q42.2c"; locus "ERVLE_1q42.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0339"; repClass "LTR"; repEnd "4784"; repFamily "ERVL"; repLeft "4469"; repStart "-883"; chr1 rmsk exon 232154388 232154652 825 - . gene_id "ERVLE_1q42.2c"; transcript_id "ERVLE_1q42.2c"; locus "ERVLE_1q42.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0339"; repClass "LTR"; repEnd "4547"; repFamily "ERVL"; repLeft "4243"; repStart "-1120"; chr1 rmsk exon 232154696 232154835 513 - . gene_id "ERVLE_1q42.2c"; transcript_id "ERVLE_1q42.2c"; locus "ERVLE_1q42.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0339"; repClass "LTR"; repEnd "4095"; repFamily "ERVL"; repLeft "3943"; repStart "-1572"; ### HERVL_1q42.2 ### chr1 rmsk gene 232196552 232201638 . - . gene_id "HERVL_1q42.2"; transcript_id "HERVL_1q42.2"; locus "HERVL_1q42.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0114"; model_cov "4632"; model_pct "81.9"; chr1 rmsk exon 232196552 232196583 2757 - . gene_id "HERVL_1q42.2"; transcript_id "HERVL_1q42.2"; locus "HERVL_1q42.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0114"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "405"; repStart "-8"; chr1 rmsk exon 232196654 232196684 2757 - . gene_id "HERVL_1q42.2"; transcript_id "HERVL_1q42.2"; locus "HERVL_1q42.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0114"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "368"; repStart "-40"; chr1 rmsk exon 232196718 232197076 2757 - . gene_id "HERVL_1q42.2"; transcript_id "HERVL_1q42.2"; locus "HERVL_1q42.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0114"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "2"; repStart "-77"; chr1 rmsk exon 232197077 232201638 30037 - . gene_id "HERVL_1q42.2"; transcript_id "HERVL_1q42.2"; locus "HERVL_1q42.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0114"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1022"; repStart "0"; ### ERV316A3_1q42.2b ### chr1 rmsk gene 232213630 232216676 . + . gene_id "ERV316A3_1q42.2b"; transcript_id "ERV316A3_1q42.2b"; locus "ERV316A3_1q42.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0184"; model_cov "1998"; model_pct "38.2"; chr1 rmsk exon 232213630 232214058 1452 + . gene_id "ERV316A3_1q42.2b"; transcript_id "ERV316A3_1q42.2b"; locus "ERV316A3_1q42.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0184"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-9"; repStart "28"; chr1 rmsk exon 232214233 232214512 3326 + . gene_id "ERV316A3_1q42.2b"; transcript_id "ERV316A3_1q42.2b"; locus "ERV316A3_1q42.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0184"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-4773"; repStart "169"; chr1 rmsk exon 232214958 232216676 3326 + . gene_id "ERV316A3_1q42.2b"; transcript_id "ERV316A3_1q42.2b"; locus "ERV316A3_1q42.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0184"; repClass "LTR"; repEnd "2168"; repFamily "ERVL"; repLeft "-3058"; repStart "454"; ### HERVH_1q42.2d ### chr1 rmsk gene 232229629 232234999 . - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0099"; model_cov "4502"; model_pct "58.4"; chr1 rmsk exon 232229629 232230060 2761 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 232230061 232230440 2584 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 232230439 232230656 1368 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 232230658 232231320 4484 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 232231323 232231827 3514 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr1 rmsk exon 232231818 232231967 1011 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 232231947 232232494 3636 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2453"; repStart "-4718"; chr1 rmsk exon 232232491 232234547 14474 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "2039"; repFamily "ERV1"; repLeft "1"; repStart "-5674"; chr1 rmsk exon 232234550 232234999 3531 - . gene_id "HERVH_1q42.2d"; transcript_id "HERVH_1q42.2d"; locus "HERVH_1q42.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0099"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_1q42.2c ### chr1 rmsk gene 232745164 232747470 . + . gene_id "ERV316A3_1q42.2c"; transcript_id "ERV316A3_1q42.2c"; locus "ERV316A3_1q42.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0185"; model_cov "1269"; model_pct "24.3"; chr1 rmsk exon 232745164 232745516 767 + . gene_id "ERV316A3_1q42.2c"; transcript_id "ERV316A3_1q42.2c"; locus "ERV316A3_1q42.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0185"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "-932"; repStart "3837"; chr1 rmsk exon 232746133 232746956 1594 + . gene_id "ERV316A3_1q42.2c"; transcript_id "ERV316A3_1q42.2c"; locus "ERV316A3_1q42.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0185"; repClass "LTR"; repEnd "5136"; repFamily "ERVL"; repLeft "-90"; repStart "4324"; chr1 rmsk exon 232747100 232747470 789 + . gene_id "ERV316A3_1q42.2c"; transcript_id "ERV316A3_1q42.2c"; locus "ERV316A3_1q42.2c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0185"; repClass "LTR"; repEnd "483"; repFamily "ERVL"; repLeft "-6"; repStart "87"; ### ERVLE_1q42.2d ### chr1 rmsk gene 232931162 232935648 . + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0341"; model_cov "2334"; model_pct "41.2"; chr1 rmsk exon 232931162 232931508 5933 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "1702"; repFamily "ERVL"; repLeft "-3965"; repStart "1335"; chr1 rmsk exon 232931672 232932654 5933 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "-2961"; repStart "1703"; chr1 rmsk exon 232933167 232933326 5933 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "2869"; repFamily "ERVL"; repLeft "-2798"; repStart "2707"; chr1 rmsk exon 232933620 232933732 5933 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "3012"; repFamily "ERVL"; repLeft "-2655"; repStart "2870"; chr1 rmsk exon 232933724 232934210 1659 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "4862"; repFamily "ERVL"; repLeft "-805"; repStart "4345"; chr1 rmsk exon 232934920 232935066 494 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "5648"; repFamily "ERVL"; repLeft "-19"; repStart "5505"; chr1 rmsk exon 232935086 232935648 900 + . gene_id "ERVLE_1q42.2d"; transcript_id "ERVLE_1q42.2d"; locus "ERVLE_1q42.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0341"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-14"; repStart "1"; ### HERVL74_1q42.2 ### chr1 rmsk gene 233588967 233591729 . + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0005"; model_cov "2846"; model_pct "50.1"; chr1 rmsk exon 233588967 233591163 5046 + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0005"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-2353"; repStart "1041"; chr1 rmsk exon 233591184 233591305 658 + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0005"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3506"; chr1 rmsk exon 233591318 233591471 800 + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0005"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "-1617"; repStart "3913"; chr1 rmsk exon 233591465 233591567 595 + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0005"; repClass "LTR"; repEnd "4688"; repFamily "ERVL"; repLeft "-997"; repStart "4586"; chr1 rmsk exon 233591575 233591729 588 + . gene_id "HERVL74_1q42.2"; transcript_id "HERVL74_1q42.2"; locus "HERVL74_1q42.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0005"; repClass "LTR"; repEnd "4802"; repFamily "ERVL"; repLeft "-883"; repStart "4641"; ### HERVH_1q42.2e ### chr1 rmsk gene 233683449 233689204 . - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0100"; model_cov "4239"; model_pct "55.0"; chr1 rmsk exon 233683449 233683880 2943 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 233683881 233684475 2630 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 233684480 233685124 4268 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr1 rmsk exon 233685127 233685620 3304 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr1 rmsk exon 233685620 233685767 906 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 233685765 233688644 17493 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "437"; repStart "-4729"; chr1 rmsk exon 233688773 233689204 2847 - . gene_id "HERVH_1q42.2e"; transcript_id "HERVH_1q42.2e"; locus "HERVH_1q42.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0100"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_1q42.2a ### chr1 rmsk gene 233725225 233729737 . - . gene_id "MER61_1q42.2a"; transcript_id "MER61_1q42.2a"; locus "MER61_1q42.2a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0037"; model_cov "3876"; model_pct "74.3"; chr1 rmsk exon 233725225 233725525 1147 - . gene_id "MER61_1q42.2a"; transcript_id "MER61_1q42.2a"; locus "MER61_1q42.2a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0037"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr1 rmsk exon 233725526 233729409 26435 - . gene_id "MER61_1q42.2a"; transcript_id "MER61_1q42.2a"; locus "MER61_1q42.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0037"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1341"; repStart "0"; chr1 rmsk exon 233729727 233729737 26435 - . gene_id "MER61_1q42.2a"; transcript_id "MER61_1q42.2a"; locus "MER61_1q42.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0037"; repClass "LTR"; repEnd "1340"; repFamily "ERV1"; repLeft "1340"; repStart "-3877"; ### MER61_1q42.2b ### chr1 rmsk gene 233730042 233731494 . - . gene_id "MER61_1q42.2b"; transcript_id "MER61_1q42.2b"; locus "MER61_1q42.2b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0038"; model_cov "1231"; model_pct "23.6"; chr1 rmsk exon 233730042 233730422 26435 - . gene_id "MER61_1q42.2b"; transcript_id "MER61_1q42.2b"; locus "MER61_1q42.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0038"; repClass "LTR"; repEnd "1340"; repFamily "ERV1"; repLeft "958"; repStart "-3877"; chr1 rmsk exon 233730416 233731227 3983 - . gene_id "MER61_1q42.2b"; transcript_id "MER61_1q42.2b"; locus "MER61_1q42.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0038"; repClass "LTR"; repEnd "850"; repFamily "ERV1"; repLeft "1"; repStart "-4367"; chr1 rmsk exon 233731242 233731494 1097 - . gene_id "MER61_1q42.2b"; transcript_id "MER61_1q42.2b"; locus "MER61_1q42.2b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0038"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "18"; repStart "-29"; ### MER4B_1q42.2 ### chr1 rmsk gene 233867096 233867589 . + . gene_id "MER4B_1q42.2"; transcript_id "MER4B_1q42.2"; locus "MER4B_1q42.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0043"; model_cov "847"; model_pct "12.5"; chr1 rmsk exon 233867096 233867589 1688 + . gene_id "MER4B_1q42.2"; transcript_id "MER4B_1q42.2"; locus "MER4B_1q42.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0043"; repClass "LTR"; repEnd "5672"; repFamily "ERV1"; repLeft "-1086"; repStart "4825"; ### ERVLB4_1q42.2 ### chr1 rmsk gene 233875154 233877864 . + . gene_id "ERVLB4_1q42.2"; transcript_id "ERVLB4_1q42.2"; locus "ERVLB4_1q42.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0127"; model_cov "2102"; model_pct "36.8"; chr1 rmsk exon 233875154 233875535 1395 + . gene_id "ERVLB4_1q42.2"; transcript_id "ERVLB4_1q42.2"; locus "ERVLB4_1q42.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0127"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr1 rmsk exon 233875536 233876032 2750 + . gene_id "ERVLB4_1q42.2"; transcript_id "ERVLB4_1q42.2"; locus "ERVLB4_1q42.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0127"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-5214"; repStart "1"; chr1 rmsk exon 233876048 233877592 5674 + . gene_id "ERVLB4_1q42.2"; transcript_id "ERVLB4_1q42.2"; locus "ERVLB4_1q42.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0127"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4111"; chr1 rmsk exon 233877609 233877864 824 + . gene_id "ERVLB4_1q42.2"; transcript_id "ERVLB4_1q42.2"; locus "ERVLB4_1q42.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0127"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "-54"; repStart "234"; ### MER41_1q42.3 ### chr1 rmsk gene 235410260 235411639 . - . gene_id "MER41_1q42.3"; transcript_id "MER41_1q42.3"; locus "MER41_1q42.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0036"; model_cov "1028"; model_pct "17.3"; chr1 rmsk exon 235410260 235410699 3417 - . gene_id "MER41_1q42.3"; transcript_id "MER41_1q42.3"; locus "MER41_1q42.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0036"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-112"; chr1 rmsk exon 235410700 235411244 3743 - . gene_id "MER41_1q42.3"; transcript_id "MER41_1q42.3"; locus "MER41_1q42.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0036"; repClass "LTR"; repEnd "4458"; repFamily "ERV1"; repLeft "3605"; repStart "-1488"; chr1 rmsk exon 235411214 235411483 1112 - . gene_id "MER41_1q42.3"; transcript_id "MER41_1q42.3"; locus "MER41_1q42.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0036"; repClass "LTR"; repEnd "5019"; repFamily "ERV1"; repLeft "4844"; repStart "-927"; chr1 rmsk exon 235411484 235411639 1151 - . gene_id "MER41_1q42.3"; transcript_id "MER41_1q42.3"; locus "MER41_1q42.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0036"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "401"; repStart "0"; ### ERVLE_1q42.3 ### chr1 rmsk gene 236135271 236139173 . + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0343"; model_cov "2946"; model_pct "52.0"; chr1 rmsk exon 236135271 236135473 418 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "716"; repFamily "ERVL"; repLeft "-4951"; repStart "485"; chr1 rmsk exon 236135575 236136317 999 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "1628"; repFamily "ERVL"; repLeft "-4039"; repStart "927"; chr1 rmsk exon 236137164 236137271 308 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "2405"; repFamily "ERVL"; repLeft "-3262"; repStart "2291"; chr1 rmsk exon 236137373 236137540 303 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "3474"; repFamily "ERVL"; repLeft "-2193"; repStart "3296"; chr1 rmsk exon 236137541 236138122 1531 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "3362"; repFamily "ERVL"; repLeft "-2305"; repStart "2755"; chr1 rmsk exon 236138147 236139173 2237 + . gene_id "ERVLE_1q42.3"; transcript_id "ERVLE_1q42.3"; locus "ERVLE_1q42.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0343"; repClass "LTR"; repEnd "5068"; repFamily "ERVL"; repLeft "-599"; repStart "3953"; ### HERVL40_1q42.3 ### chr1 rmsk gene 236334178 236336895 . - . gene_id "HERVL40_1q42.3"; transcript_id "HERVL40_1q42.3"; locus "HERVL40_1q42.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0029"; model_cov "591"; model_pct "10.7"; chr1 rmsk exon 236334178 236334463 2219 - . gene_id "HERVL40_1q42.3"; transcript_id "HERVL40_1q42.3"; locus "HERVL40_1q42.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0029"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "229"; repStart "0"; chr1 rmsk exon 236334773 236335005 2219 - . gene_id "HERVL40_1q42.3"; transcript_id "HERVL40_1q42.3"; locus "HERVL40_1q42.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0029"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "1"; repStart "-291"; chr1 rmsk exon 236335016 236335251 1235 - . gene_id "HERVL40_1q42.3"; transcript_id "HERVL40_1q42.3"; locus "HERVL40_1q42.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0029"; repClass "LTR"; repEnd "5520"; repFamily "ERVL"; repLeft "5277"; repStart "-10"; chr1 rmsk exon 236336448 236336895 1126 - . gene_id "HERVL40_1q42.3"; transcript_id "HERVL40_1q42.3"; locus "HERVL40_1q42.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0029"; repClass "LTR"; repEnd "4683"; repFamily "ERVL"; repLeft "4335"; repStart "-847"; ### HERVH_1q43a ### chr1 rmsk gene 236932317 236937922 . - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0102"; model_cov "4681"; model_pct "60.7"; chr1 rmsk exon 236932317 236932745 3459 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 236932746 236933336 2647 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 236933338 236933956 3946 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr1 rmsk exon 236933959 236934452 3503 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr1 rmsk exon 236934452 236934598 861 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 236934593 236937491 15886 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr1 rmsk exon 236937494 236937922 3400 - . gene_id "HERVH_1q43a"; transcript_id "HERVH_1q43a"; locus "HERVH_1q43a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0102"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML4_1q43 ### chr1 rmsk gene 237915275 237918989 . + . gene_id "HML4_1q43"; transcript_id "HML4_1q43"; locus "HML4_1q43"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0005"; model_cov "2467"; model_pct "30.4"; chr1 rmsk exon 237915275 237916282 8436 + . gene_id "HML4_1q43"; transcript_id "HML4_1q43"; locus "HML4_1q43"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0005"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 237916283 237917108 3096 + . gene_id "HML4_1q43"; transcript_id "HML4_1q43"; locus "HML4_1q43"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0005"; repClass "LTR"; repEnd "828"; repFamily "ERVK"; repLeft "-7288"; repStart "1"; chr1 rmsk exon 237917103 237917177 283 + . gene_id "HML4_1q43"; transcript_id "HML4_1q43"; locus "HML4_1q43"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0005"; repClass "LTR"; repEnd "839"; repFamily "ERVK"; repLeft "-7277"; repStart "753"; chr1 rmsk exon 237917390 237918989 6280 + . gene_id "HML4_1q43"; transcript_id "HML4_1q43"; locus "HML4_1q43"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0005"; repClass "LTR"; repEnd "2517"; repFamily "ERVK"; repLeft "-5599"; repStart "963"; ### MER61_1q43 ### chr1 rmsk gene 238481160 238486145 . - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0039"; model_cov "4380"; model_pct "84.0"; chr1 rmsk exon 238481160 238481484 1746 - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0039"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 238481485 238485117 21304 - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0039"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1655"; repStart "0"; chr1 rmsk exon 238485116 238485158 356 - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0039"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chr1 rmsk exon 238485152 238485817 2079 - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0039"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "1"; repStart "-4440"; chr1 rmsk exon 238485818 238486145 1843 - . gene_id "MER61_1q43"; transcript_id "MER61_1q43"; locus "MER61_1q43"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0039"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERV316A3_1q43a ### chr1 rmsk gene 238509197 238512392 . + . gene_id "ERV316A3_1q43a"; transcript_id "ERV316A3_1q43a"; locus "ERV316A3_1q43a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0187"; model_cov "1614"; model_pct "30.9"; chr1 rmsk exon 238509197 238509693 578 + . gene_id "ERV316A3_1q43a"; transcript_id "ERV316A3_1q43a"; locus "ERV316A3_1q43a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0187"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "-3625"; repStart "1058"; chr1 rmsk exon 238510672 238511738 1461 + . gene_id "ERV316A3_1q43a"; transcript_id "ERV316A3_1q43a"; locus "ERV316A3_1q43a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0187"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "-1269"; repStart "2886"; chr1 rmsk exon 238511989 238512279 350 + . gene_id "ERV316A3_1q43a"; transcript_id "ERV316A3_1q43a"; locus "ERV316A3_1q43a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0187"; repClass "LTR"; repEnd "317"; repFamily "ERVL"; repLeft "-172"; repStart "4"; chr1 rmsk exon 238512318 238512392 285 + . gene_id "ERV316A3_1q43a"; transcript_id "ERV316A3_1q43a"; locus "ERV316A3_1q43a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0187"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-14"; repStart "406"; ### ERVLB4_1q43a ### chr1 rmsk gene 238626678 238630665 . - . gene_id "ERVLB4_1q43a"; transcript_id "ERVLB4_1q43a"; locus "ERVLB4_1q43a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0128"; model_cov "3011"; model_pct "52.7"; chr1 rmsk exon 238626678 238627112 1935 - . gene_id "ERVLB4_1q43a"; transcript_id "ERVLB4_1q43a"; locus "ERVLB4_1q43a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0128"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "28"; repStart "0"; chr1 rmsk exon 238627115 238627458 17119 - . gene_id "ERVLB4_1q43a"; transcript_id "ERVLB4_1q43a"; locus "ERVLB4_1q43a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0128"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5382"; repStart "0"; chr1 rmsk exon 238627736 238630149 17119 - . gene_id "ERVLB4_1q43a"; transcript_id "ERVLB4_1q43a"; locus "ERVLB4_1q43a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0128"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "2904"; repStart "-333"; chr1 rmsk exon 238630460 238630665 17119 - . gene_id "ERVLB4_1q43a"; transcript_id "ERVLB4_1q43a"; locus "ERVLB4_1q43a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0128"; repClass "LTR"; repEnd "2903"; repFamily "ERVL"; repLeft "2701"; repStart "-2811"; ### ERVLE_1q43a ### chr1 rmsk gene 238674380 238677354 . - . gene_id "ERVLE_1q43a"; transcript_id "ERVLE_1q43a"; locus "ERVLE_1q43a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0345"; model_cov "1495"; model_pct "26.4"; chr1 rmsk exon 238674380 238674604 631 - . gene_id "ERVLE_1q43a"; transcript_id "ERVLE_1q43a"; locus "ERVLE_1q43a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0345"; repClass "LTR"; repEnd "4212"; repFamily "ERVL"; repLeft "3919"; repStart "-1455"; chr1 rmsk exon 238674749 238675140 705 - . gene_id "ERVLE_1q43a"; transcript_id "ERVLE_1q43a"; locus "ERVLE_1q43a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0345"; repClass "LTR"; repEnd "3919"; repFamily "ERVL"; repLeft "3512"; repStart "-1748"; chr1 rmsk exon 238675783 238676442 1326 - . gene_id "ERVLE_1q43a"; transcript_id "ERVLE_1q43a"; locus "ERVLE_1q43a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0345"; repClass "LTR"; repEnd "2937"; repFamily "ERVL"; repLeft "2270"; repStart "-2730"; chr1 rmsk exon 238677228 238677354 277 - . gene_id "ERVLE_1q43a"; transcript_id "ERVLE_1q43a"; locus "ERVLE_1q43a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0345"; repClass "LTR"; repEnd "1857"; repFamily "ERVL"; repLeft "1729"; repStart "-3810"; ### ERV316A3_1q43b ### chr1 rmsk gene 238712225 238714350 . - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0188"; model_cov "779"; model_pct "14.9"; chr1 rmsk exon 238712225 238712461 724 - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0188"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "142"; repStart "-109"; chr1 rmsk exon 238712743 238712910 365 - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0188"; repClass "LTR"; repEnd "4805"; repFamily "ERVL"; repLeft "4633"; repStart "-421"; chr1 rmsk exon 238713165 238713288 308 - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0188"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "4298"; repStart "-806"; chr1 rmsk exon 238713901 238714022 280 - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0188"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "3701"; repStart "-1391"; chr1 rmsk exon 238714005 238714350 736 - . gene_id "ERV316A3_1q43b"; transcript_id "ERV316A3_1q43b"; locus "ERV316A3_1q43b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0188"; repClass "LTR"; repEnd "3929"; repFamily "ERVL"; repLeft "3578"; repStart "-1297"; ### HML2_1q43 ### chr1 rmsk gene 238762295 238764473 . - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0015"; model_cov "1101"; model_pct "14.6"; chr1 rmsk exon 238762295 238763288 7387 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 238763378 238764473 7000 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6346"; repStart "-89"; ### MER4B_1q43a ### chr1 rmsk gene 238923328 238924370 . - . gene_id "MER4B_1q43a"; transcript_id "MER4B_1q43a"; locus "MER4B_1q43a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0044"; model_cov "930"; model_pct "13.8"; chr1 rmsk exon 238923328 238923563 2778 - . gene_id "MER4B_1q43a"; transcript_id "MER4B_1q43a"; locus "MER4B_1q43a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0044"; repClass "LTR"; repEnd "6749"; repFamily "ERV1"; repLeft "6517"; repStart "-9"; chr1 rmsk exon 238923646 238924277 2778 - . gene_id "MER4B_1q43a"; transcript_id "MER4B_1q43a"; locus "MER4B_1q43a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0044"; repClass "LTR"; repEnd "6516"; repFamily "ERV1"; repLeft "5932"; repStart "-242"; chr1 rmsk exon 238924275 238924370 301 - . gene_id "MER4B_1q43a"; transcript_id "MER4B_1q43a"; locus "MER4B_1q43a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0044"; repClass "LTR"; repEnd "5391"; repFamily "ERV1"; repLeft "5277"; repStart "-1367"; ### MER4B_1q43b ### chr1 rmsk gene 238927241 238929487 . - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0045"; model_cov "1237"; model_pct "18.3"; chr1 rmsk exon 238927241 238927477 2698 - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0045"; repClass "LTR"; repEnd "2558"; repFamily "ERV1"; repLeft "2459"; repStart "-4200"; chr1 rmsk exon 238927841 238928485 2698 - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0045"; repClass "LTR"; repEnd "2458"; repFamily "ERV1"; repLeft "1664"; repStart "-4300"; chr1 rmsk exon 238929026 238929325 2187 - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0045"; repClass "LTR"; repEnd "301"; repFamily "ERV1"; repLeft "0"; repStart "-6457"; chr1 rmsk exon 238929338 238929378 259 - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0045"; repClass "LTR"; repEnd "49"; repFamily "ERV1"; repLeft "6"; repStart "-6709"; chr1 rmsk exon 238929383 238929487 558 - . gene_id "MER4B_1q43b"; transcript_id "MER4B_1q43b"; locus "MER4B_1q43b"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0045"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "798"; repStart "0"; ### HERVL_1q43a ### chr1 rmsk gene 239038978 239040583 . + . gene_id "HERVL_1q43a"; transcript_id "HERVL_1q43a"; locus "HERVL_1q43a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0115"; model_cov "1066"; model_pct "18.9"; chr1 rmsk exon 239038978 239040042 8003 + . gene_id "HERVL_1q43a"; transcript_id "HERVL_1q43a"; locus "HERVL_1q43a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0115"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4588"; chr1 rmsk exon 239040043 239040583 1980 + . gene_id "HERVL_1q43a"; transcript_id "HERVL_1q43a"; locus "HERVL_1q43a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0115"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVH_1q43b ### chr1 rmsk gene 239101236 239107062 . + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0103"; model_cov "4908"; model_pct "63.6"; chr1 rmsk exon 239101236 239101619 2297 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 239101622 239104767 16255 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr1 rmsk exon 239104762 239104909 893 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr1 rmsk exon 239104909 239105401 3343 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr1 rmsk exon 239105404 239106066 4527 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 239106068 239106285 1350 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 239106278 239106662 2385 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7314"; chr1 rmsk exon 239106663 239107062 2782 + . gene_id "HERVH_1q43b"; transcript_id "HERVH_1q43b"; locus "HERVH_1q43b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0103"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_1q43c ### chr1 rmsk gene 239269924 239275810 . - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0189"; model_cov "4461"; model_pct "85.4"; chr1 rmsk exon 239269924 239270230 924 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "145"; repStart "-2"; chr1 rmsk exon 239270318 239271540 5918 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4002"; repStart "-6"; chr1 rmsk exon 239271925 239272700 5918 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "4001"; repFamily "ERVL"; repLeft "3181"; repStart "-1225"; chr1 rmsk exon 239272727 239273335 2223 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "2436"; repFamily "ERVL"; repLeft "1781"; repStart "-2790"; chr1 rmsk exon 239273739 239275600 2223 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "1780"; repFamily "ERVL"; repLeft "12"; repStart "-3446"; chr1 rmsk exon 239275614 239275718 322 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "362"; repStart "0"; chr1 rmsk exon 239275734 239275810 405 - . gene_id "ERV316A3_1q43c"; transcript_id "ERV316A3_1q43c"; locus "ERV316A3_1q43c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0189"; repClass "LTR"; repEnd "84"; repFamily "ERVL"; repLeft "1"; repStart "-378"; ### ERVLE_1q43b ### chr1 rmsk gene 239338231 239338820 . - . gene_id "ERVLE_1q43b"; transcript_id "ERVLE_1q43b"; locus "ERVLE_1q43b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0346"; model_cov "600"; model_pct "10.6"; chr1 rmsk exon 239338231 239338820 939 - . gene_id "ERVLE_1q43b"; transcript_id "ERVLE_1q43b"; locus "ERVLE_1q43b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0346"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "1735"; repStart "-3332"; ### LTR57_1q43 ### chr1 rmsk gene 239928083 239929364 . - . gene_id "LTR57_1q43"; transcript_id "LTR57_1q43"; locus "LTR57_1q43"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0017"; model_cov "1317"; model_pct "24.6"; chr1 rmsk exon 239928083 239929364 5512 - . gene_id "LTR57_1q43"; transcript_id "LTR57_1q43"; locus "LTR57_1q43"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0017"; repClass "LTR"; repEnd "1592"; repFamily "ERVL"; repLeft "275"; repStart "-3751"; ### MER41_1q43 ### chr1 rmsk gene 239929413 239930226 . - . gene_id "MER41_1q43"; transcript_id "MER41_1q43"; locus "MER41_1q43"; category "internal"; intModel "MER41-int"; locid "MER41-int_0037"; model_cov "668"; model_pct "11.2"; chr1 rmsk exon 239929413 239929702 811 - . gene_id "MER41_1q43"; transcript_id "MER41_1q43"; locus "MER41_1q43"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0037"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "345"; repStart "-5235"; chr1 rmsk exon 239929672 239929819 459 - . gene_id "MER41_1q43"; transcript_id "MER41_1q43"; locus "MER41_1q43"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0037"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "254"; repStart "-5549"; chr1 rmsk exon 239930066 239930226 311 - . gene_id "MER41_1q43"; transcript_id "MER41_1q43"; locus "MER41_1q43"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0037"; repClass "LTR"; repEnd "-142"; repFamily "ERV1"; repLeft "-301"; repStart "-6088"; ### ERVLB4_1q43b ### chr1 rmsk gene 239949309 239950727 . - . gene_id "ERVLB4_1q43b"; transcript_id "ERVLB4_1q43b"; locus "ERVLB4_1q43b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0129"; model_cov "1048"; model_pct "18.3"; chr1 rmsk exon 239949309 239949365 1004 - . gene_id "ERVLB4_1q43b"; transcript_id "ERVLB4_1q43b"; locus "ERVLB4_1q43b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0129"; repClass "LTR"; repEnd "2440"; repFamily "ERVL"; repLeft "2393"; repStart "-3274"; chr1 rmsk exon 239949658 239950264 1004 - . gene_id "ERVLB4_1q43b"; transcript_id "ERVLB4_1q43b"; locus "ERVLB4_1q43b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0129"; repClass "LTR"; repEnd "2392"; repFamily "ERVL"; repLeft "1722"; repStart "-3322"; chr1 rmsk exon 239950367 239950453 299 - . gene_id "ERVLB4_1q43b"; transcript_id "ERVLB4_1q43b"; locus "ERVLB4_1q43b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0129"; repClass "LTR"; repEnd "1634"; repFamily "ERVL"; repLeft "1546"; repStart "-4080"; chr1 rmsk exon 239950491 239950727 354 - . gene_id "ERVLB4_1q43b"; transcript_id "ERVLB4_1q43b"; locus "ERVLB4_1q43b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0129"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "1144"; repStart "-4327"; ### PABLB_1q43 ### chr1 rmsk gene 239983320 239986167 . - . gene_id "PABLB_1q43"; transcript_id "PABLB_1q43"; locus "PABLB_1q43"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0007"; model_cov "1733"; model_pct "24.3"; chr1 rmsk exon 239983320 239983946 498 - . gene_id "PABLB_1q43"; transcript_id "PABLB_1q43"; locus "PABLB_1q43"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0007"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "1527"; repStart "-4549"; chr1 rmsk exon 239984027 239984396 435 - . gene_id "PABLB_1q43"; transcript_id "PABLB_1q43"; locus "PABLB_1q43"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0007"; repClass "LTR"; repEnd "2421"; repFamily "ERV1"; repLeft "1860"; repStart "-4701"; chr1 rmsk exon 239986042 239986167 261 - . gene_id "PABLB_1q43"; transcript_id "PABLB_1q43"; locus "PABLB_1q43"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0007"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "454"; repStart "-6542"; ### ERVLE_1q43c ### chr1 rmsk gene 239988228 239989413 . + . gene_id "ERVLE_1q43c"; transcript_id "ERVLE_1q43c"; locus "ERVLE_1q43c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0348"; model_cov "1053"; model_pct "18.6"; chr1 rmsk exon 239988228 239988515 539 + . gene_id "ERVLE_1q43c"; transcript_id "ERVLE_1q43c"; locus "ERVLE_1q43c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0348"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "-4308"; repStart "1084"; chr1 rmsk exon 239988613 239988680 276 + . gene_id "ERVLE_1q43c"; transcript_id "ERVLE_1q43c"; locus "ERVLE_1q43c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0348"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-4087"; repStart "1512"; chr1 rmsk exon 239988709 239989413 773 + . gene_id "ERVLE_1q43c"; transcript_id "ERVLE_1q43c"; locus "ERVLE_1q43c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0348"; repClass "LTR"; repEnd "2409"; repFamily "ERVL"; repLeft "-3258"; repStart "1699"; ### ERVLE_1q43d ### chr1 rmsk gene 240030554 240033332 . + . gene_id "ERVLE_1q43d"; transcript_id "ERVLE_1q43d"; locus "ERVLE_1q43d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0349"; model_cov "1483"; model_pct "26.2"; chr1 rmsk exon 240030554 240030628 934 + . gene_id "ERVLE_1q43d"; transcript_id "ERVLE_1q43d"; locus "ERVLE_1q43d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0349"; repClass "LTR"; repEnd "2737"; repFamily "ERVL"; repLeft "-2930"; repStart "2654"; chr1 rmsk exon 240030975 240031752 934 + . gene_id "ERVLE_1q43d"; transcript_id "ERVLE_1q43d"; locus "ERVLE_1q43d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0349"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "-2141"; repStart "2738"; chr1 rmsk exon 240032726 240033332 585 + . gene_id "ERVLE_1q43d"; transcript_id "ERVLE_1q43d"; locus "ERVLE_1q43d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0349"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-601"; repStart "4454"; ### ERV316A3_1q43d ### chr1 rmsk gene 240419494 240421256 . - . gene_id "ERV316A3_1q43d"; transcript_id "ERV316A3_1q43d"; locus "ERV316A3_1q43d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0190"; model_cov "1003"; model_pct "19.2"; chr1 rmsk exon 240419494 240420334 2066 - . gene_id "ERV316A3_1q43d"; transcript_id "ERV316A3_1q43d"; locus "ERV316A3_1q43d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0190"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "1092"; repStart "-3294"; chr1 rmsk exon 240420410 240420578 415 - . gene_id "ERV316A3_1q43d"; transcript_id "ERV316A3_1q43d"; locus "ERV316A3_1q43d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0190"; repClass "LTR"; repEnd "859"; repFamily "ERVL"; repLeft "696"; repStart "-4367"; chr1 rmsk exon 240420901 240421256 1329 - . gene_id "ERV316A3_1q43d"; transcript_id "ERV316A3_1q43d"; locus "ERV316A3_1q43d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0190"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "20"; repStart "-82"; ### ERV316A3_1q43e ### chr1 rmsk gene 240485614 240489056 . + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0191"; model_cov "2136"; model_pct "40.9"; chr1 rmsk exon 240485614 240486003 627 + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0191"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-16"; repStart "5"; chr1 rmsk exon 240486126 240486196 412 + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0191"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-4777"; repStart "377"; chr1 rmsk exon 240486822 240487028 412 + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0191"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "-4574"; repStart "450"; chr1 rmsk exon 240487223 240488679 1774 + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0191"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "-2970"; repStart "783"; chr1 rmsk exon 240488840 240489056 395 + . gene_id "ERV316A3_1q43e"; transcript_id "ERV316A3_1q43e"; locus "ERV316A3_1q43e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0191"; repClass "LTR"; repEnd "3068"; repFamily "ERVL"; repLeft "-2158"; repStart "2679"; ### HERVH_1q43c ### chr1 rmsk gene 241433889 241439882 . + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0104"; model_cov "5261"; model_pct "68.2"; chr1 rmsk exon 241433889 241434289 2755 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr1 rmsk exon 241434292 241438221 16543 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr1 rmsk exon 241438224 241438887 4454 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr1 rmsk exon 241438889 241439104 1358 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr1 rmsk exon 241439105 241439481 2384 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr1 rmsk exon 241439482 241439882 2735 + . gene_id "HERVH_1q43c"; transcript_id "HERVH_1q43c"; locus "HERVH_1q43c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0104"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_1q43c ### chr1 rmsk gene 241450003 241456515 . - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0130"; model_cov "5697"; model_pct "99.7"; chr1 rmsk exon 241450003 241450262 2013 - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0130"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "263"; repStart "0"; chr1 rmsk exon 241450531 241450790 2013 - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0130"; repClass "LTR"; repEnd "262"; repFamily "ERVL"; repLeft "1"; repStart "-258"; chr1 rmsk exon 241450793 241455070 23542 - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0130"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "1452"; repStart "-2"; chr1 rmsk exon 241455053 241455224 979 - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0130"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "2106"; repStart "-3434"; chr1 rmsk exon 241455231 241456515 6179 - . gene_id "ERVLB4_1q43c"; transcript_id "ERVLB4_1q43c"; locus "ERVLB4_1q43c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0130"; repClass "LTR"; repEnd "1469"; repFamily "ERVL"; repLeft "206"; repStart "-4245"; ### ERVLB4_1q43d ### chr1 rmsk gene 242007259 242009413 . - . gene_id "ERVLB4_1q43d"; transcript_id "ERVLB4_1q43d"; locus "ERVLB4_1q43d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0131"; model_cov "1984"; model_pct "34.7"; chr1 rmsk exon 242007259 242008566 2861 - . gene_id "ERVLB4_1q43d"; transcript_id "ERVLB4_1q43d"; locus "ERVLB4_1q43d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0131"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "2937"; repStart "-1320"; chr1 rmsk exon 242008876 242009413 2861 - . gene_id "ERVLB4_1q43d"; transcript_id "ERVLB4_1q43d"; locus "ERVLB4_1q43d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0131"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "2409"; repStart "-2778"; ### ERV316A3_1q43f ### chr1 rmsk gene 242009399 242010422 . - . gene_id "ERV316A3_1q43f"; transcript_id "ERV316A3_1q43f"; locus "ERV316A3_1q43f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0192"; model_cov "722"; model_pct "13.8"; chr1 rmsk exon 242009399 242009482 859 - . gene_id "ERV316A3_1q43f"; transcript_id "ERV316A3_1q43f"; locus "ERV316A3_1q43f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0192"; repClass "LTR"; repEnd "1058"; repFamily "ERVL"; repLeft "981"; repStart "-4168"; chr1 rmsk exon 242009780 242010422 859 - . gene_id "ERV316A3_1q43f"; transcript_id "ERV316A3_1q43f"; locus "ERV316A3_1q43f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0192"; repClass "LTR"; repEnd "980"; repFamily "ERVL"; repLeft "335"; repStart "-4246"; ### PRIMA41_1q43 ### chr1 rmsk gene 242053127 242056948 . + . gene_id "PRIMA41_1q43"; transcript_id "PRIMA41_1q43"; locus "PRIMA41_1q43"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0014"; model_cov "3211"; model_pct "41.4"; chr1 rmsk exon 242053127 242054682 8902 + . gene_id "PRIMA41_1q43"; transcript_id "PRIMA41_1q43"; locus "PRIMA41_1q43"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0014"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "2956"; chr1 rmsk exon 242055349 242056948 8902 + . gene_id "PRIMA41_1q43"; transcript_id "PRIMA41_1q43"; locus "PRIMA41_1q43"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0014"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "4514"; ### HML5_1q43 ### chr1 rmsk gene 242211188 242216792 . + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0014"; model_cov "3767"; model_pct "55.1"; chr1 rmsk exon 242211188 242211670 2630 + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0014"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "31"; chr1 rmsk exon 242211672 242212415 5180 + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0014"; repClass "LTR"; repEnd "762"; repFamily "ERVK"; repLeft "-6075"; repStart "2"; chr1 rmsk exon 242212821 242214871 21025 + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0014"; repClass "LTR"; repEnd "4397"; repFamily "ERVK"; repLeft "-2440"; repStart "2327"; chr1 rmsk exon 242215188 242216282 21025 + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0014"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "-1502"; repStart "4398"; chr1 rmsk exon 242216283 242216792 3192 + . gene_id "HML5_1q43"; transcript_id "HML5_1q43"; locus "HML5_1q43"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0014"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11D_1q43 ### chr1 rmsk gene 242457057 242460442 . + . gene_id "HERVK11D_1q43"; transcript_id "HERVK11D_1q43"; locus "HERVK11D_1q43"; category "oneside"; intModel "HERVK11D-int"; locid "HERVK11D-int_0001"; model_cov "2727"; model_pct "35.2"; chr1 rmsk exon 242457057 242459570 12436 + . gene_id "HERVK11D_1q43"; transcript_id "HERVK11D_1q43"; locus "HERVK11D_1q43"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0001"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "5025"; chr1 rmsk exon 242459572 242460442 7422 + . gene_id "HERVK11D_1q43"; transcript_id "HERVK11D_1q43"; locus "HERVK11D_1q43"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0001"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### ERVLE_1q43e ### chr1 rmsk gene 242756943 242758123 . - . gene_id "ERVLE_1q43e"; transcript_id "ERVLE_1q43e"; locus "ERVLE_1q43e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0353"; model_cov "943"; model_pct "16.6"; chr1 rmsk exon 242756943 242757578 1930 - . gene_id "ERVLE_1q43e"; transcript_id "ERVLE_1q43e"; locus "ERVLE_1q43e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0353"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "4720"; repStart "-305"; chr1 rmsk exon 242757832 242758123 1930 - . gene_id "ERVLE_1q43e"; transcript_id "ERVLE_1q43e"; locus "ERVLE_1q43e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0353"; repClass "LTR"; repEnd "4719"; repFamily "ERVL"; repLeft "4418"; repStart "-948"; ### HERVL_1q43b ### chr1 rmsk gene 242861903 242865121 . + . gene_id "HERVL_1q43b"; transcript_id "HERVL_1q43b"; locus "HERVL_1q43b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0116"; model_cov "2926"; model_pct "51.8"; chr1 rmsk exon 242861903 242862230 2670 + . gene_id "HERVL_1q43b"; transcript_id "HERVL_1q43b"; locus "HERVL_1q43b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0116"; repClass "LTR"; repEnd "2447"; repFamily "ERVL"; repLeft "-3207"; repStart "2038"; chr1 rmsk exon 242862529 242864223 2670 + . gene_id "HERVL_1q43b"; transcript_id "HERVL_1q43b"; locus "HERVL_1q43b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0116"; repClass "LTR"; repEnd "4231"; repFamily "ERVL"; repLeft "-1423"; repStart "2448"; chr1 rmsk exon 242864384 242865121 1675 + . gene_id "HERVL_1q43b"; transcript_id "HERVL_1q43b"; locus "HERVL_1q43b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0116"; repClass "LTR"; repEnd "5512"; repFamily "ERVL"; repLeft "-142"; repStart "4778"; ### ERV316A3_1q43g ### chr1 rmsk gene 242869310 242870897 . - . gene_id "ERV316A3_1q43g"; transcript_id "ERV316A3_1q43g"; locus "ERV316A3_1q43g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0194"; model_cov "1341"; model_pct "25.7"; chr1 rmsk exon 242869310 242870635 2601 - . gene_id "ERV316A3_1q43g"; transcript_id "ERV316A3_1q43g"; locus "ERV316A3_1q43g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0194"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "2032"; repStart "-1853"; chr1 rmsk exon 242870637 242870897 570 - . gene_id "ERV316A3_1q43g"; transcript_id "ERV316A3_1q43g"; locus "ERV316A3_1q43g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0194"; repClass "LTR"; repEnd "306"; repFamily "ERVL"; repLeft "22"; repStart "-145"; ### MER4B_1q44a ### chr1 rmsk gene 243625451 243626656 . + . gene_id "MER4B_1q44a"; transcript_id "MER4B_1q44a"; locus "MER4B_1q44a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0046"; model_cov "1214"; model_pct "18.0"; chr1 rmsk exon 243625451 243626656 2879 + . gene_id "MER4B_1q44a"; transcript_id "MER4B_1q44a"; locus "MER4B_1q44a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0046"; repClass "LTR"; repEnd "4531"; repFamily "ERV1"; repLeft "-2227"; repStart "3317"; ### ERV316A3_1q44a ### chr1 rmsk gene 244003513 244010519 . + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0195"; model_cov "4936"; model_pct "94.5"; chr1 rmsk exon 244003513 244003608 249 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "333"; chr1 rmsk exon 244003744 244004768 2478 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "1467"; repFamily "ERVL"; repLeft "-3759"; repStart "450"; chr1 rmsk exon 244004981 244005869 6925 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "2067"; repFamily "ERVL"; repLeft "-3159"; repStart "1229"; chr1 rmsk exon 244006181 244007949 6925 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "3846"; repFamily "ERVL"; repLeft "-1380"; repStart "2068"; chr1 rmsk exon 244008206 244009038 3392 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "-549"; repStart "3862"; chr1 rmsk exon 244009552 244010056 3392 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "5166"; repFamily "ERVL"; repLeft "-60"; repStart "4678"; chr1 rmsk exon 244010116 244010519 858 + . gene_id "ERV316A3_1q44a"; transcript_id "ERV316A3_1q44a"; locus "ERV316A3_1q44a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0195"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "4"; ### HERVFRD_1q44 ### chr1 rmsk gene 244303080 244306784 . + . gene_id "HERVFRD_1q44"; transcript_id "HERVFRD_1q44"; locus "HERVFRD_1q44"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0020"; model_cov "3011"; model_pct "41.8"; chr1 rmsk exon 244303080 244303826 4024 + . gene_id "HERVFRD_1q44"; transcript_id "HERVFRD_1q44"; locus "HERVFRD_1q44"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0020"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr1 rmsk exon 244303827 244305613 6633 + . gene_id "HERVFRD_1q44"; transcript_id "HERVFRD_1q44"; locus "HERVFRD_1q44"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0020"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "7"; chr1 rmsk exon 244305610 244306784 6124 + . gene_id "HERVFRD_1q44"; transcript_id "HERVFRD_1q44"; locus "HERVFRD_1q44"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0020"; repClass "LTR"; repEnd "3958"; repFamily "ERV1"; repLeft "-3247"; repStart "2789"; ### ERVL_1q44a ### chr1 rmsk gene 244390034 244392185 . - . gene_id "ERVL_1q44a"; transcript_id "ERVL_1q44a"; locus "ERVL_1q44a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0028"; model_cov "1138"; model_pct "19.8"; chr1 rmsk exon 244390034 244390510 2595 - . gene_id "ERVL_1q44a"; transcript_id "ERVL_1q44a"; locus "ERVL_1q44a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0028"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "3"; repStart "-41"; chr1 rmsk exon 244390825 244391179 11793 - . gene_id "ERVL_1q44a"; transcript_id "ERVL_1q44a"; locus "ERVL_1q44a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0028"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5402"; repStart "0"; chr1 rmsk exon 244391471 244392185 11793 - . gene_id "ERVL_1q44a"; transcript_id "ERVL_1q44a"; locus "ERVL_1q44a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0028"; repClass "LTR"; repEnd "5401"; repFamily "ERVL"; repLeft "4618"; repStart "-356"; ### ERVL_1q44b ### chr1 rmsk gene 244392218 244399244 . - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0029"; model_cov "2849"; model_pct "49.5"; chr1 rmsk exon 244392218 244392722 11793 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "5401"; repFamily "ERVL"; repLeft "4846"; repStart "-356"; chr1 rmsk exon 244393021 244393161 11793 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "4061"; repFamily "ERVL"; repLeft "3931"; repStart "-1696"; chr1 rmsk exon 244393580 244394239 11793 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "3928"; repFamily "ERVL"; repLeft "3285"; repStart "-1829"; chr1 rmsk exon 244396128 244396467 1888 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "2927"; repStart "-2464"; chr1 rmsk exon 244396863 244397420 3616 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "2943"; repFamily "ERVL"; repLeft "2374"; repStart "-2814"; chr1 rmsk exon 244397426 244397674 1249 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "811"; repFamily "ERVL"; repLeft "547"; repStart "-4946"; chr1 rmsk exon 244398006 244398114 789 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "339"; repStart "-5318"; chr1 rmsk exon 244398431 244398541 789 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "275"; repFamily "ERVL"; repLeft "132"; repStart "-5482"; chr1 rmsk exon 244398641 244398720 409 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "123"; repFamily "ERVL"; repLeft "44"; repStart "-5634"; chr1 rmsk exon 244398725 244399244 1960 - . gene_id "ERVL_1q44b"; transcript_id "ERVL_1q44b"; locus "ERVL_1q44b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0029"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-64"; repStart "-4"; ### HUERSP1_1q44a ### chr1 rmsk gene 244453356 244460586 . + . gene_id "HUERSP1_1q44a"; transcript_id "HUERSP1_1q44a"; locus "HUERSP1_1q44a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0017"; model_cov "6221"; model_pct "99.3"; chr1 rmsk exon 244453356 244453501 1086 + . gene_id "HUERSP1_1q44a"; transcript_id "HUERSP1_1q44a"; locus "HUERSP1_1q44a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0017"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "546"; chr1 rmsk exon 244453502 244459080 42460 + . gene_id "HUERSP1_1q44a"; transcript_id "HUERSP1_1q44a"; locus "HUERSP1_1q44a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0017"; repClass "LTR"; repEnd "5604"; repFamily "ERV1"; repLeft "-659"; repStart "1"; chr1 rmsk exon 244459377 244459994 42460 + . gene_id "HUERSP1_1q44a"; transcript_id "HUERSP1_1q44a"; locus "HUERSP1_1q44a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0017"; repClass "LTR"; repEnd "6223"; repFamily "ERV1"; repLeft "-40"; repStart "5605"; chr1 rmsk exon 244460009 244460586 4191 + . gene_id "HUERSP1_1q44a"; transcript_id "HUERSP1_1q44a"; locus "HUERSP1_1q44a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0017"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### ERVLB4_1q44a ### chr1 rmsk gene 244544100 244550311 . + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0132"; model_cov "3773"; model_pct "66.0"; chr1 rmsk exon 244544100 244546064 10893 + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0132"; repClass "LTR"; repEnd "3742"; repFamily "ERVL"; repLeft "-1972"; repStart "1744"; chr1 rmsk exon 244547951 244548958 5926 + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0132"; repClass "LTR"; repEnd "4847"; repFamily "ERVL"; repLeft "-867"; repStart "3802"; chr1 rmsk exon 244548956 244549576 3387 + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0132"; repClass "LTR"; repEnd "5532"; repFamily "ERVL"; repLeft "-182"; repStart "4925"; chr1 rmsk exon 244549636 244549750 659 + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0132"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5591"; chr1 rmsk exon 244549751 244550311 2811 + . gene_id "ERVLB4_1q44a"; transcript_id "ERVLB4_1q44a"; locus "ERVLB4_1q44a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0132"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVIP10FH_1q44 ### chr1 rmsk gene 244573858 244576488 . - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0014"; model_cov "1261"; model_pct "24.7"; chr1 rmsk exon 244573858 244574501 4256 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 244574505 244574603 417 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "5000"; repStart "-2"; chr1 rmsk exon 244574595 244574798 1069 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "4342"; repFamily "ERV1"; repLeft "4139"; repStart "-760"; chr1 rmsk exon 244574808 244574940 891 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "2173"; repFamily "ERV1"; repLeft "2038"; repStart "-2929"; chr1 rmsk exon 244575648 244576316 2334 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "22"; repStart "-4257"; chr1 rmsk exon 244576338 244576488 841 - . gene_id "HERVIP10FH_1q44"; transcript_id "HERVIP10FH_1q44"; locus "HERVIP10FH_1q44"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0014"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "427"; repStart "0"; ### ERVLE_1q44a ### chr1 rmsk gene 244628305 244630889 . - . gene_id "ERVLE_1q44a"; transcript_id "ERVLE_1q44a"; locus "ERVLE_1q44a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0356"; model_cov "1706"; model_pct "30.1"; chr1 rmsk exon 244628305 244628845 1090 - . gene_id "ERVLE_1q44a"; transcript_id "ERVLE_1q44a"; locus "ERVLE_1q44a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0356"; repClass "LTR"; repEnd "4152"; repFamily "ERVL"; repLeft "3528"; repStart "-1515"; chr1 rmsk exon 244628922 244629511 1649 - . gene_id "ERVLE_1q44a"; transcript_id "ERVLE_1q44a"; locus "ERVLE_1q44a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0356"; repClass "LTR"; repEnd "3396"; repFamily "ERVL"; repLeft "2757"; repStart "-2271"; chr1 rmsk exon 244629940 244630158 1649 - . gene_id "ERVLE_1q44a"; transcript_id "ERVLE_1q44a"; locus "ERVLE_1q44a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0356"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "2501"; repStart "-2922"; chr1 rmsk exon 244630703 244630889 538 - . gene_id "ERVLE_1q44a"; transcript_id "ERVLE_1q44a"; locus "ERVLE_1q44a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0356"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "1102"; repStart "-4366"; ### ERV316A3_1q44b ### chr1 rmsk gene 244644512 244646518 . + . gene_id "ERV316A3_1q44b"; transcript_id "ERV316A3_1q44b"; locus "ERV316A3_1q44b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0198"; model_cov "1552"; model_pct "29.7"; chr1 rmsk exon 244644512 244644942 1120 + . gene_id "ERV316A3_1q44b"; transcript_id "ERV316A3_1q44b"; locus "ERV316A3_1q44b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0198"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr1 rmsk exon 244644953 244645618 1325 + . gene_id "ERV316A3_1q44b"; transcript_id "ERV316A3_1q44b"; locus "ERV316A3_1q44b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0198"; repClass "LTR"; repEnd "710"; repFamily "ERVL"; repLeft "-4516"; repStart "16"; chr1 rmsk exon 244645678 244646518 2943 + . gene_id "ERV316A3_1q44b"; transcript_id "ERV316A3_1q44b"; locus "ERV316A3_1q44b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0198"; repClass "LTR"; repEnd "2438"; repFamily "ERVL"; repLeft "-2788"; repStart "1580"; ### MER41_1q44a ### chr1 rmsk gene 244815534 244818297 . + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0038"; model_cov "1574"; model_pct "26.5"; chr1 rmsk exon 244815534 244815948 3968 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0038"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "135"; chr1 rmsk exon 244815949 244816001 259 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "-1754"; repFamily "ERV1"; repLeft "-7700"; repStart "-1809"; chr1 rmsk exon 244816232 244816434 1488 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "-1595"; repFamily "ERV1"; repLeft "-7541"; repStart "-1809"; chr1 rmsk exon 244816640 244817071 3084 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "-5326"; repStart "203"; chr1 rmsk exon 244817062 244817302 2145 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "1337"; repFamily "ERV1"; repLeft "-4609"; repStart "1083"; chr1 rmsk exon 244817605 244818064 2298 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "2024"; repFamily "ERV1"; repLeft "-3922"; repStart "1608"; chr1 rmsk exon 244818074 244818297 2766 + . gene_id "MER41_1q44a"; transcript_id "MER41_1q44a"; locus "MER41_1q44a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0038"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "-1760"; repStart "3968"; ### MER41_1q44b ### chr1 rmsk gene 244818602 244821738 . + . gene_id "MER41_1q44b"; transcript_id "MER41_1q44b"; locus "MER41_1q44b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0039"; model_cov "2055"; model_pct "34.6"; chr1 rmsk exon 244818602 244818924 4477 + . gene_id "MER41_1q44b"; transcript_id "MER41_1q44b"; locus "MER41_1q44b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0039"; repClass "LTR"; repEnd "4077"; repFamily "ERV1"; repLeft "-1869"; repStart "3847"; chr1 rmsk exon 244819229 244819647 11263 + . gene_id "MER41_1q44b"; transcript_id "MER41_1q44b"; locus "MER41_1q44b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0039"; repClass "LTR"; repEnd "4486"; repFamily "ERV1"; repLeft "-1460"; repStart "3928"; chr1 rmsk exon 244819948 244821187 11263 + . gene_id "MER41_1q44b"; transcript_id "MER41_1q44b"; locus "MER41_1q44b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0039"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4677"; chr1 rmsk exon 244821188 244821738 4185 + . gene_id "MER41_1q44b"; transcript_id "MER41_1q44b"; locus "MER41_1q44b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0039"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_1q44c ### chr1 rmsk gene 245062647 245063542 . - . gene_id "ERV316A3_1q44c"; transcript_id "ERV316A3_1q44c"; locus "ERV316A3_1q44c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0199"; model_cov "907"; model_pct "17.4"; chr1 rmsk exon 245062647 245063542 2105 - . gene_id "ERV316A3_1q44c"; transcript_id "ERV316A3_1q44c"; locus "ERV316A3_1q44c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0199"; repClass "LTR"; repEnd "1647"; repFamily "ERVL"; repLeft "740"; repStart "-3579"; ### ERVLE_1q44b ### chr1 rmsk gene 245736451 245739287 . - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0357"; model_cov "2220"; model_pct "39.2"; chr1 rmsk exon 245736451 245736501 690 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "4443"; repFamily "ERVL"; repLeft "4388"; repStart "-1224"; chr1 rmsk exon 245736552 245736806 690 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "4387"; repFamily "ERVL"; repLeft "4132"; repStart "-1280"; chr1 rmsk exon 245736931 245737102 456 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "4005"; repFamily "ERVL"; repLeft "3818"; repStart "-1662"; chr1 rmsk exon 245737332 245737919 1653 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "3827"; repFamily "ERVL"; repLeft "3168"; repStart "-1840"; chr1 rmsk exon 245737934 245738116 394 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "2990"; repFamily "ERVL"; repLeft "2802"; repStart "-2677"; chr1 rmsk exon 245738130 245738384 782 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "2744"; repFamily "ERVL"; repLeft "2479"; repStart "-2923"; chr1 rmsk exon 245738392 245738611 1401 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "1517"; repFamily "ERVL"; repLeft "1291"; repStart "-4150"; chr1 rmsk exon 245738912 245739287 1401 - . gene_id "ERVLE_1q44b"; transcript_id "ERVLE_1q44b"; locus "ERVLE_1q44b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0357"; repClass "LTR"; repEnd "1290"; repFamily "ERVL"; repLeft "905"; repStart "-4377"; ### ERVLE_1q44c ### chr1 rmsk gene 246500331 246501196 . - . gene_id "ERVLE_1q44c"; transcript_id "ERVLE_1q44c"; locus "ERVLE_1q44c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0358"; model_cov "782"; model_pct "13.8"; chr1 rmsk exon 246500331 246500846 916 - . gene_id "ERVLE_1q44c"; transcript_id "ERVLE_1q44c"; locus "ERVLE_1q44c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0358"; repClass "LTR"; repEnd "4559"; repFamily "ERVL"; repLeft "3913"; repStart "-1108"; chr1 rmsk exon 246501060 246501196 343 - . gene_id "ERVLE_1q44c"; transcript_id "ERVLE_1q44c"; locus "ERVLE_1q44c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0358"; repClass "LTR"; repEnd "3726"; repFamily "ERVL"; repLeft "3590"; repStart "-1941"; ### HUERSP3_1q44 ### chr1 rmsk gene 246529011 246538336 . + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0015"; model_cov "7250"; model_pct "81.3"; chr1 rmsk exon 246529011 246529801 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "1056"; repFamily "ERV1"; repLeft "-7863"; repStart "181"; chr1 rmsk exon 246530404 246532861 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "3597"; repFamily "ERV1"; repLeft "-5322"; repStart "1057"; chr1 rmsk exon 246532916 246534697 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "5439"; repFamily "ERV1"; repLeft "-3480"; repStart "3598"; chr1 rmsk exon 246534785 246535521 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "6204"; repFamily "ERV1"; repLeft "-2715"; repStart "5440"; chr1 rmsk exon 246535825 246535990 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "6341"; repFamily "ERV1"; repLeft "-2578"; repStart "6205"; chr1 rmsk exon 246536298 246536907 39998 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "6953"; repFamily "ERV1"; repLeft "-1966"; repStart "6342"; chr1 rmsk exon 246537219 246537664 3484 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "8911"; repFamily "ERV1"; repLeft "-8"; repStart "8428"; chr1 rmsk exon 246537669 246538336 4230 + . gene_id "HUERSP3_1q44"; transcript_id "HUERSP3_1q44"; locus "HUERSP3_1q44"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0015"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH48_1q44a ### chr1 rmsk gene 246605409 246606819 . - . gene_id "HERVH48_1q44a"; transcript_id "HERVH48_1q44a"; locus "HERVH48_1q44a"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0005"; model_cov "860"; model_pct "12.9"; chr1 rmsk exon 246605409 246605993 2060 - . gene_id "HERVH48_1q44a"; transcript_id "HERVH48_1q44a"; locus "HERVH48_1q44a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0005"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 246605994 246606819 6184 - . gene_id "HERVH48_1q44a"; transcript_id "HERVH48_1q44a"; locus "HERVH48_1q44a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0005"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "5794"; repStart "0"; ### HERVH48_1q44b ### chr1 rmsk gene 246634716 246640099 . - . gene_id "HERVH48_1q44b"; transcript_id "HERVH48_1q44b"; locus "HERVH48_1q44b"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0006"; model_cov "3758"; model_pct "56.5"; chr1 rmsk exon 246634716 246635120 2855 - . gene_id "HERVH48_1q44b"; transcript_id "HERVH48_1q44b"; locus "HERVH48_1q44b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0006"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 246635124 246635930 6144 - . gene_id "HERVH48_1q44b"; transcript_id "HERVH48_1q44b"; locus "HERVH48_1q44b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0006"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "5805"; repStart "-7"; chr1 rmsk exon 246637153 246639697 14648 - . gene_id "HERVH48_1q44b"; transcript_id "HERVH48_1q44b"; locus "HERVH48_1q44b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0006"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "2906"; repStart "-832"; chr1 rmsk exon 246639713 246640099 2595 - . gene_id "HERVH48_1q44b"; transcript_id "HERVH48_1q44b"; locus "HERVH48_1q44b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0006"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_1q44 ### chr1 rmsk gene 246747512 246752385 . - . gene_id "HERVIP10F_1q44"; transcript_id "HERVIP10F_1q44"; locus "HERVIP10F_1q44"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0011"; model_cov "4057"; model_pct "52.4"; chr1 rmsk exon 246747512 246747990 2588 - . gene_id "HERVIP10F_1q44"; transcript_id "HERVIP10F_1q44"; locus "HERVIP10F_1q44"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0011"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr1 rmsk exon 246748037 246751121 15471 - . gene_id "HERVIP10F_1q44"; transcript_id "HERVIP10F_1q44"; locus "HERVIP10F_1q44"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0011"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "4600"; repStart "-2"; chr1 rmsk exon 246751089 246751776 6060 - . gene_id "HERVIP10F_1q44"; transcript_id "HERVIP10F_1q44"; locus "HERVIP10F_1q44"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0011"; repClass "LTR"; repEnd "5327"; repFamily "ERV1"; repLeft "4587"; repStart "-2410"; chr1 rmsk exon 246752079 246752385 6060 - . gene_id "HERVIP10F_1q44"; transcript_id "HERVIP10F_1q44"; locus "HERVIP10F_1q44"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0011"; repClass "LTR"; repEnd "4586"; repFamily "ERV1"; repLeft "4404"; repStart "-3151"; ### HML3_1q44 ### chr1 rmsk gene 247024661 247030174 . + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0022"; model_cov "4550"; model_pct "75.6"; chr1 rmsk exon 247024661 247025149 4006 + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0022"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 247025150 247025718 4697 + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0022"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr1 rmsk exon 247025720 247027363 14206 + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0022"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1125"; chr1 rmsk exon 247027364 247029662 19582 + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0022"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3723"; chr1 rmsk exon 247029663 247030174 4320 + . gene_id "HML3_1q44"; transcript_id "HML3_1q44"; locus "HML3_1q44"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0022"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK14C_1q44 ### chr1 rmsk gene 247106028 247111180 . + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0003"; model_cov "4844"; model_pct "65.2"; chr1 rmsk exon 247106028 247107766 13753 + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0003"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "-5653"; repStart "3"; chr1 rmsk exon 247107767 247108346 3870 + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0003"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "-4890"; repStart "1463"; chr1 rmsk exon 247108341 247108710 3122 + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0003"; repClass "LTR"; repEnd "5676"; repFamily "ERVK"; repLeft "-1758"; repStart "5306"; chr1 rmsk exon 247108728 247110303 13106 + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0003"; repClass "LTR"; repEnd "7417"; repFamily "ERVK"; repLeft "-17"; repStart "5802"; chr1 rmsk exon 247110624 247111180 4019 + . gene_id "HERVK14C_1q44"; transcript_id "HERVK14C_1q44"; locus "HERVK14C_1q44"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0003"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_1q44 ### chr1 rmsk gene 247144115 247148678 . - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0030"; model_cov "1104"; model_pct "20.0"; chr1 rmsk exon 247144115 247144347 564 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4439"; repStart "-874"; chr1 rmsk exon 247145258 247145382 527 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "3880"; repFamily "ERVL"; repLeft "3754"; repStart "-1650"; chr1 rmsk exon 247145478 247145558 300 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "3613"; repFamily "ERVL"; repLeft "3532"; repStart "-1917"; chr1 rmsk exon 247146346 247146608 698 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "2860"; repFamily "ERVL"; repLeft "2577"; repStart "-2670"; chr1 rmsk exon 247146611 247146712 674 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "2327"; repFamily "ERVL"; repLeft "2231"; repStart "-3203"; chr1 rmsk exon 247147555 247147720 674 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "2230"; repFamily "ERVL"; repLeft "2061"; repStart "-3300"; chr1 rmsk exon 247147963 247148104 351 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "1166"; repFamily "ERVL"; repLeft "1034"; repStart "-4364"; chr1 rmsk exon 247148397 247148678 832 - . gene_id "HERVL40_1q44"; transcript_id "HERVL40_1q44"; locus "HERVL40_1q44"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0030"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "238"; repStart "0"; ### HERVP71A_1q44a ### chr1 rmsk gene 247218171 247221832 . + . gene_id "HERVP71A_1q44a"; transcript_id "HERVP71A_1q44a"; locus "HERVP71A_1q44a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0009"; model_cov "1968"; model_pct "25.9"; chr1 rmsk exon 247218171 247218627 3744 + . gene_id "HERVP71A_1q44a"; transcript_id "HERVP71A_1q44a"; locus "HERVP71A_1q44a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0009"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr1 rmsk exon 247218632 247219907 8189 + . gene_id "HERVP71A_1q44a"; transcript_id "HERVP71A_1q44a"; locus "HERVP71A_1q44a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0009"; repClass "LTR"; repEnd "1393"; repFamily "ERV1"; repLeft "-6197"; repStart "5"; chr1 rmsk exon 247221258 247221832 4394 + . gene_id "HERVP71A_1q44a"; transcript_id "HERVP71A_1q44a"; locus "HERVP71A_1q44a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0009"; repClass "LTR"; repEnd "1962"; repFamily "ERV1"; repLeft "-5628"; repStart "1382"; ### HERVH48_1q44c ### chr1 rmsk gene 247286141 247290862 . + . gene_id "HERVH48_1q44c"; transcript_id "HERVH48_1q44c"; locus "HERVH48_1q44c"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0007"; model_cov "3983"; model_pct "59.9"; chr1 rmsk exon 247286141 247286542 2762 + . gene_id "HERVH48_1q44c"; transcript_id "HERVH48_1q44c"; locus "HERVH48_1q44c"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0007"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr1 rmsk exon 247286546 247289592 14499 + . gene_id "HERVH48_1q44c"; transcript_id "HERVH48_1q44c"; locus "HERVH48_1q44c"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0007"; repClass "LTR"; repEnd "3157"; repFamily "ERV1"; repLeft "-3497"; repStart "1"; chr1 rmsk exon 247289585 247290381 5869 + . gene_id "HERVH48_1q44c"; transcript_id "HERVH48_1q44c"; locus "HERVH48_1q44c"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0007"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "5827"; chr1 rmsk exon 247290382 247290862 2399 + . gene_id "HERVH48_1q44c"; transcript_id "HERVH48_1q44c"; locus "HERVH48_1q44c"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0007"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVP71A_1q44b ### chr1 rmsk gene 247354022 247360572 . + . gene_id "HERVP71A_1q44b"; transcript_id "HERVP71A_1q44b"; locus "HERVP71A_1q44b"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0010"; model_cov "5290"; model_pct "69.7"; chr1 rmsk exon 247354022 247354305 3379 + . gene_id "HERVP71A_1q44b"; transcript_id "HERVP71A_1q44b"; locus "HERVP71A_1q44b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0010"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "179"; chr1 rmsk exon 247354310 247356802 16319 + . gene_id "HERVP71A_1q44b"; transcript_id "HERVP71A_1q44b"; locus "HERVP71A_1q44b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0010"; repClass "LTR"; repEnd "2607"; repFamily "ERV1"; repLeft "-4983"; repStart "5"; chr1 rmsk exon 247357438 247360114 19027 + . gene_id "HERVP71A_1q44b"; transcript_id "HERVP71A_1q44b"; locus "HERVP71A_1q44b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0010"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "4902"; chr1 rmsk exon 247360116 247360572 3448 + . gene_id "HERVP71A_1q44b"; transcript_id "HERVP71A_1q44b"; locus "HERVP71A_1q44b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0010"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### HUERSP1_1q44b ### chr1 rmsk gene 247381070 247385375 . - . gene_id "HUERSP1_1q44b"; transcript_id "HUERSP1_1q44b"; locus "HUERSP1_1q44b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0018"; model_cov "2934"; model_pct "46.8"; chr1 rmsk exon 247381070 247381911 19198 - . gene_id "HUERSP1_1q44b"; transcript_id "HUERSP1_1q44b"; locus "HUERSP1_1q44b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0018"; repClass "LTR"; repEnd "2937"; repFamily "ERV1"; repLeft "2106"; repStart "-3326"; chr1 rmsk exon 247382216 247382632 19198 - . gene_id "HUERSP1_1q44b"; transcript_id "HUERSP1_1q44b"; locus "HUERSP1_1q44b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0018"; repClass "LTR"; repEnd "2105"; repFamily "ERV1"; repLeft "1763"; repStart "-4158"; chr1 rmsk exon 247382941 247384691 19198 - . gene_id "HUERSP1_1q44b"; transcript_id "HUERSP1_1q44b"; locus "HUERSP1_1q44b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0018"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "1"; repStart "-4501"; chr1 rmsk exon 247384692 247385375 4919 - . gene_id "HUERSP1_1q44b"; transcript_id "HUERSP1_1q44b"; locus "HUERSP1_1q44b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0018"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1q44d ### chr1 rmsk gene 247528515 247530280 . + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_0360"; model_cov "1317"; model_pct "23.2"; chr1 rmsk exon 247528515 247529066 1497 + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0360"; repClass "LTR"; repEnd "4122"; repFamily "ERVL"; repLeft "-1545"; repStart "3556"; chr1 rmsk exon 247529076 247529630 793 + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0360"; repClass "LTR"; repEnd "4794"; repFamily "ERVL"; repLeft "-873"; repStart "4204"; chr1 rmsk exon 247529631 247529718 2081 + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_0360"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "-325"; repStart "1"; chr1 rmsk exon 247529746 247530112 2081 + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_0360"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-1"; repStart "90"; chr1 rmsk exon 247530113 247530280 793 + . gene_id "ERVLE_1q44d"; transcript_id "ERVLE_1q44d"; locus "ERVLE_1q44d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0360"; repClass "LTR"; repEnd "4956"; repFamily "ERVL"; repLeft "-711"; repStart "4795"; ### ERVLB4_1q44b ### chr1 rmsk gene 247577934 247580848 . + . gene_id "ERVLB4_1q44b"; transcript_id "ERVLB4_1q44b"; locus "ERVLB4_1q44b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0133"; model_cov "2759"; model_pct "48.3"; chr1 rmsk exon 247577934 247580586 13162 + . gene_id "ERVLB4_1q44b"; transcript_id "ERVLB4_1q44b"; locus "ERVLB4_1q44b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0133"; repClass "LTR"; repEnd "5535"; repFamily "ERVL"; repLeft "-179"; repStart "2776"; chr1 rmsk exon 247580667 247580848 1105 + . gene_id "ERVLB4_1q44b"; transcript_id "ERVLB4_1q44b"; locus "ERVLB4_1q44b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0133"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "-225"; repStart "8"; ### HERVL_1q44 ### chr1 rmsk gene 247705022 247710327 . - . gene_id "HERVL_1q44"; transcript_id "HERVL_1q44"; locus "HERVL_1q44"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0117"; model_cov "4634"; model_pct "82.0"; chr1 rmsk exon 247705022 247705462 2856 - . gene_id "HERVL_1q44"; transcript_id "HERVL_1q44"; locus "HERVL_1q44"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0117"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr1 rmsk exon 247705463 247709298 30067 - . gene_id "HERVL_1q44"; transcript_id "HERVL_1q44"; locus "HERVL_1q44"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0117"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1788"; repStart "0"; chr1 rmsk exon 247709300 247710055 5849 - . gene_id "HERVL_1q44"; transcript_id "HERVL_1q44"; locus "HERVL_1q44"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0117"; repClass "LTR"; repEnd "1533"; repFamily "ERVL"; repLeft "765"; repStart "-4121"; chr1 rmsk exon 247710057 247710327 2055 - . gene_id "HERVL_1q44"; transcript_id "HERVL_1q44"; locus "HERVL_1q44"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0117"; repClass "LTR"; repEnd "277"; repFamily "ERVL"; repLeft "1"; repStart "-167"; ### ERVL_1q44c ### chr1 rmsk gene 247782785 247788803 . - . gene_id "ERVL_1q44c"; transcript_id "ERVL_1q44c"; locus "ERVL_1q44c"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0030"; model_cov "5752"; model_pct "99.9"; chr1 rmsk exon 247782785 247787524 32601 - . gene_id "ERVL_1q44c"; transcript_id "ERVL_1q44c"; locus "ERVL_1q44c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0030"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "1024"; repStart "-2"; chr1 rmsk exon 247787828 247788803 32601 - . gene_id "ERVL_1q44c"; transcript_id "ERVL_1q44c"; locus "ERVL_1q44c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0030"; repClass "LTR"; repEnd "1023"; repFamily "ERVL"; repLeft "2"; repStart "-4734"; ### HARLEQUIN_1q44 ### chr1 rmsk gene 247898331 247905895 . - . gene_id "HARLEQUIN_1q44"; transcript_id "HARLEQUIN_1q44"; locus "HARLEQUIN_1q44"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0026"; model_cov "6310"; model_pct "91.5"; chr1 rmsk exon 247898331 247898783 3518 - . gene_id "HARLEQUIN_1q44"; transcript_id "HARLEQUIN_1q44"; locus "HARLEQUIN_1q44"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0026"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 247898784 247904275 40408 - . gene_id "HARLEQUIN_1q44"; transcript_id "HARLEQUIN_1q44"; locus "HARLEQUIN_1q44"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0026"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "1400"; repStart "-1"; chr1 rmsk exon 247904255 247905072 5610 - . gene_id "HARLEQUIN_1q44"; transcript_id "HARLEQUIN_1q44"; locus "HARLEQUIN_1q44"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0026"; repClass "LTR"; repEnd "1078"; repFamily "ERV1"; repLeft "263"; repStart "-5818"; chr1 rmsk exon 247905435 247905895 3723 - . gene_id "HARLEQUIN_1q44"; transcript_id "HARLEQUIN_1q44"; locus "HARLEQUIN_1q44"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0026"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_1q44e ### chr1 rmsk gene 248158848 248160895 . - . gene_id "ERVLE_1q44e"; transcript_id "ERVLE_1q44e"; locus "ERVLE_1q44e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0362"; model_cov "1928"; model_pct "34.0"; chr1 rmsk exon 248158848 248159943 2481 - . gene_id "ERVLE_1q44e"; transcript_id "ERVLE_1q44e"; locus "ERVLE_1q44e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0362"; repClass "LTR"; repEnd "5159"; repFamily "ERVL"; repLeft "4019"; repStart "-508"; chr1 rmsk exon 248160159 248160895 1623 - . gene_id "ERVLE_1q44e"; transcript_id "ERVLE_1q44e"; locus "ERVLE_1q44e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0362"; repClass "LTR"; repEnd "3073"; repFamily "ERVL"; repLeft "2285"; repStart "-2594"; ### ERVLE_1q44f ### chr1 rmsk gene 248215760 248221016 . - . gene_id "ERVLE_1q44f"; transcript_id "ERVLE_1q44f"; locus "ERVLE_1q44f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0363"; model_cov "3324"; model_pct "58.7"; chr1 rmsk exon 248215760 248217188 3117 - . gene_id "ERVLE_1q44f"; transcript_id "ERVLE_1q44f"; locus "ERVLE_1q44f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0363"; repClass "LTR"; repEnd "5277"; repFamily "ERVL"; repLeft "3644"; repStart "-390"; chr1 rmsk exon 248217193 248218435 3854 - . gene_id "ERVLE_1q44f"; transcript_id "ERVLE_1q44f"; locus "ERVLE_1q44f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0363"; repClass "LTR"; repEnd "3060"; repFamily "ERVL"; repLeft "1788"; repStart "-2607"; chr1 rmsk exon 248220609 248221016 380 - . gene_id "ERVLE_1q44f"; transcript_id "ERVLE_1q44f"; locus "ERVLE_1q44f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0363"; repClass "LTR"; repEnd "526"; repFamily "ERVL"; repLeft "107"; repStart "-5141"; ### ERV316A3_1q44d ### chr1 rmsk gene 248244909 248245744 . + . gene_id "ERV316A3_1q44d"; transcript_id "ERV316A3_1q44d"; locus "ERV316A3_1q44d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0200"; model_cov "782"; model_pct "15.0"; chr1 rmsk exon 248244909 248245377 1426 + . gene_id "ERV316A3_1q44d"; transcript_id "ERV316A3_1q44d"; locus "ERV316A3_1q44d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0200"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "-2439"; repStart "2301"; chr1 rmsk exon 248245451 248245744 1426 + . gene_id "ERV316A3_1q44d"; transcript_id "ERV316A3_1q44d"; locus "ERV316A3_1q44d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0200"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2142"; repStart "2788"; ### HERVH_1q44 ### chr1 rmsk gene 248335766 248341106 . - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0105"; model_cov "4799"; model_pct "62.2"; chr1 rmsk exon 248335766 248336117 2041 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr1 rmsk exon 248336118 248336494 2323 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr1 rmsk exon 248336493 248336708 1303 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr1 rmsk exon 248336710 248338424 8114 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr1 rmsk exon 248338415 248338562 900 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr1 rmsk exon 248338557 248340244 11614 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1301"; repStart "-4726"; chr1 rmsk exon 248340231 248340695 3300 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "1"; repStart "-7245"; chr1 rmsk exon 248340699 248341106 2804 - . gene_id "HERVH_1q44"; transcript_id "HERVH_1q44"; locus "HERVH_1q44"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0105"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### MER4B_1q44b ### chr1 rmsk gene 248415906 248417806 . - . gene_id "MER4B_1q44b"; transcript_id "MER4B_1q44b"; locus "MER4B_1q44b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0047"; model_cov "918"; model_pct "13.6"; chr1 rmsk exon 248415906 248416796 4383 - . gene_id "MER4B_1q44b"; transcript_id "MER4B_1q44b"; locus "MER4B_1q44b"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0047"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1 rmsk exon 248416800 248417642 2727 - . gene_id "MER4B_1q44b"; transcript_id "MER4B_1q44b"; locus "MER4B_1q44b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0047"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5940"; repStart "0"; chr1 rmsk exon 248417705 248417806 388 - . gene_id "MER4B_1q44b"; transcript_id "MER4B_1q44b"; locus "MER4B_1q44b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0047"; repClass "LTR"; repEnd "5318"; repFamily "ERV1"; repLeft "5218"; repStart "-1440"; ### MER101_1q44 ### chr1 rmsk gene 248419102 248421874 . - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; category "internal"; intModel "MER101-int"; locid "MER101-int_0044"; model_cov "1611"; model_pct "24.3"; chr1 rmsk exon 248419102 248419620 2430 - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0044"; repClass "LTR"; repEnd "3525"; repFamily "ERV1"; repLeft "2963"; repStart "-3114"; chr1 rmsk exon 248420225 248420470 2430 - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0044"; repClass "LTR"; repEnd "2962"; repFamily "ERV1"; repLeft "2726"; repStart "-3677"; chr1 rmsk exon 248420780 248420907 2430 - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0044"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "2619"; repStart "-3914"; chr1 rmsk exon 248421048 248421138 2430 - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0044"; repClass "LTR"; repEnd "2618"; repFamily "ERV1"; repLeft "2521"; repStart "-4021"; chr1 rmsk exon 248421556 248421874 2430 - . gene_id "MER101_1q44"; transcript_id "MER101_1q44"; locus "MER101_1q44"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0044"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "1910"; repStart "-4119"; ### HML6_1q44a ### chr1 rmsk gene 248431675 248434463 . + . gene_id "HML6_1q44a"; transcript_id "HML6_1q44a"; locus "HML6_1q44a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0006"; model_cov "1165"; model_pct "16.2"; chr1 rmsk exon 248431675 248432125 2606 + . gene_id "HML6_1q44a"; transcript_id "HML6_1q44a"; locus "HML6_1q44a"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0006"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "-49"; repStart "1"; chr1 rmsk exon 248432333 248432532 589 + . gene_id "HML6_1q44a"; transcript_id "HML6_1q44a"; locus "HML6_1q44a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0006"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr1 rmsk exon 248432667 248433930 2771 + . gene_id "HML6_1q44a"; transcript_id "HML6_1q44a"; locus "HML6_1q44a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0006"; repClass "LTR"; repEnd "2228"; repFamily "ERVK"; repLeft "-4974"; repStart "1280"; chr1 rmsk exon 248434000 248434463 1635 + . gene_id "HML6_1q44a"; transcript_id "HML6_1q44a"; locus "HML6_1q44a"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0006"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HML6_1q44b ### chr1 rmsk gene 248657606 248660352 . - . gene_id "HML6_1q44b"; transcript_id "HML6_1q44b"; locus "HML6_1q44b"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0007"; model_cov "1151"; model_pct "16.0"; chr1 rmsk exon 248657606 248658073 1618 - . gene_id "HML6_1q44b"; transcript_id "HML6_1q44b"; locus "HML6_1q44b"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0007"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr1 rmsk exon 248658143 248659354 2994 - . gene_id "HML6_1q44b"; transcript_id "HML6_1q44b"; locus "HML6_1q44b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0007"; repClass "LTR"; repEnd "2228"; repFamily "ERVK"; repLeft "1280"; repStart "-4974"; chr1 rmsk exon 248659491 248659675 534 - . gene_id "HML6_1q44b"; transcript_id "HML6_1q44b"; locus "HML6_1q44b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0007"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "29"; repStart "-6970"; chr1 rmsk exon 248659902 248660352 2535 - . gene_id "HML6_1q44b"; transcript_id "HML6_1q44b"; locus "HML6_1q44b"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0007"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "1"; repStart "-49"; ### MER4_1q44a ### chr1 rmsk gene 248713986 248718003 . + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0067"; model_cov "3564"; model_pct "54.0"; chr1 rmsk exon 248713986 248714055 297 + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0067"; repClass "LTR"; repEnd "-652"; repFamily "ERV1"; repLeft "-7250"; repStart "-719"; chr1 rmsk exon 248714133 248714267 569 + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0067"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "-5197"; repStart "1265"; chr1 rmsk exon 248714272 248714843 1539 + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0067"; repClass "LTR"; repEnd "3680"; repFamily "ERV1"; repLeft "-2918"; repStart "3079"; chr1 rmsk exon 248714846 248717595 15135 + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0067"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "3837"; chr1 rmsk exon 248717601 248718003 2688 + . gene_id "MER4_1q44a"; transcript_id "MER4_1q44a"; locus "MER4_1q44a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0067"; repClass "LTR"; repEnd "430"; repFamily "ERV1"; repLeft "-42"; repStart "1"; ### MER4_1q44b ### chr1 rmsk gene 248773924 248775499 . + . gene_id "MER4_1q44b"; transcript_id "MER4_1q44b"; locus "MER4_1q44b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0068"; model_cov "1423"; model_pct "21.6"; chr1 rmsk exon 248773924 248773962 1107 + . gene_id "MER4_1q44b"; transcript_id "MER4_1q44b"; locus "MER4_1q44b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0068"; repClass "LTR"; repEnd "3755"; repFamily "ERV1"; repLeft "-2843"; repStart "3722"; chr1 rmsk exon 248774252 248774896 1687 + . gene_id "MER4_1q44b"; transcript_id "MER4_1q44b"; locus "MER4_1q44b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0068"; repClass "LTR"; repEnd "4092"; repFamily "ERV1"; repLeft "-2506"; repStart "3065"; chr1 rmsk exon 248774896 248775007 576 + . gene_id "MER4_1q44b"; transcript_id "MER4_1q44b"; locus "MER4_1q44b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0068"; repClass "LTR"; repEnd "3153"; repFamily "ERV1"; repLeft "-3445"; repStart "3034"; chr1 rmsk exon 248775257 248775499 1022 + . gene_id "MER4_1q44b"; transcript_id "MER4_1q44b"; locus "MER4_1q44b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0068"; repClass "LTR"; repEnd "3484"; repFamily "ERV1"; repLeft "-3114"; repStart "3240"; ### PABLA_2p25.3 ### chr2 rmsk gene 143112 144756 . - . gene_id "PABLA_2p25.3"; transcript_id "PABLA_2p25.3"; locus "PABLA_2p25.3"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0011"; model_cov "1432"; model_pct "28.6"; chr2 rmsk exon 143112 143341 1804 - . gene_id "PABLA_2p25.3"; transcript_id "PABLA_2p25.3"; locus "PABLA_2p25.3"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0011"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "1"; repStart "-430"; chr2 rmsk exon 143342 144756 11014 - . gene_id "PABLA_2p25.3"; transcript_id "PABLA_2p25.3"; locus "PABLA_2p25.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0011"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "3583"; repStart "0"; ### HERVW_2p25.3 ### chr2 rmsk gene 153396 160782 . - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0026"; model_cov "5734"; model_pct "66.5"; chr2 rmsk exon 153396 153564 1210 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "588"; repStart "-2"; chr2 rmsk exon 153699 154298 4898 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "1"; repStart "-182"; chr2 rmsk exon 154299 154589 2403 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8336"; repStart "0"; chr2 rmsk exon 154580 154620 303 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "7549"; repFamily "ERV1"; repLeft "7509"; repStart "-1077"; chr2 rmsk exon 154613 158188 30292 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2432"; repStart "-2607"; chr2 rmsk exon 158188 160021 13791 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "1818"; repFamily "ERV1"; repLeft "1"; repStart "-6808"; chr2 rmsk exon 160022 160782 6359 - . gene_id "HERVW_2p25.3"; transcript_id "HERVW_2p25.3"; locus "HERVW_2p25.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0026"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR57_2p25.3 ### chr2 rmsk gene 181012 182290 . + . gene_id "LTR57_2p25.3"; transcript_id "LTR57_2p25.3"; locus "LTR57_2p25.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0018"; model_cov "1293"; model_pct "24.2"; chr2 rmsk exon 181012 182290 5856 + . gene_id "LTR57_2p25.3"; transcript_id "LTR57_2p25.3"; locus "LTR57_2p25.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0018"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "-3747"; repStart "303"; ### HERVFRD_2p25.3 ### chr2 rmsk gene 826396 829540 . + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0021"; model_cov "2121"; model_pct "29.4"; chr2 rmsk exon 826396 827143 4156 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0021"; repClass "LTR"; repEnd "4921"; repFamily "ERV1"; repLeft "-2284"; repStart "4163"; chr2 rmsk exon 827465 828109 4317 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0021"; repClass "LTR"; repEnd "6087"; repFamily "ERV1"; repLeft "-1118"; repStart "5441"; chr2 rmsk exon 828107 828155 275 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0021"; repClass "LTR"; repEnd "6591"; repFamily "ERV1"; repLeft "-614"; repStart "6542"; chr2 rmsk exon 828144 828213 294 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0021"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-610"; repStart "6524"; chr2 rmsk exon 828250 828860 3883 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0021"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "-9"; repStart "6599"; chr2 rmsk exon 828861 829540 3624 + . gene_id "HERVFRD_2p25.3"; transcript_id "HERVFRD_2p25.3"; locus "HERVFRD_2p25.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0021"; repClass "LTR"; repEnd "713"; repFamily "ERV1"; repLeft "-21"; repStart "1"; ### ERVLE_2p25.3a ### chr2 rmsk gene 1141349 1143413 . - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0364"; model_cov "1515"; model_pct "26.7"; chr2 rmsk exon 1141349 1141855 650 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "2613"; repFamily "ERVL"; repLeft "1998"; repStart "-3054"; chr2 rmsk exon 1141996 1142287 741 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1506"; repStart "-3857"; chr2 rmsk exon 1142568 1142733 329 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "1196"; repFamily "ERVL"; repLeft "1025"; repStart "-4471"; chr2 rmsk exon 1142754 1142813 293 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "1025"; repFamily "ERVL"; repLeft "966"; repStart "-4642"; chr2 rmsk exon 1142943 1143037 255 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "832"; repFamily "ERVL"; repLeft "736"; repStart "-4835"; chr2 rmsk exon 1143157 1143413 711 - . gene_id "ERVLE_2p25.3a"; transcript_id "ERVLE_2p25.3a"; locus "ERVLE_2p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0364"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "279"; repStart "-5118"; ### HERVL_2p25.3a ### chr2 rmsk gene 1284963 1286863 . - . gene_id "HERVL_2p25.3a"; transcript_id "HERVL_2p25.3a"; locus "HERVL_2p25.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0119"; model_cov "1435"; model_pct "25.4"; chr2 rmsk exon 1284963 1285363 2855 - . gene_id "HERVL_2p25.3a"; transcript_id "HERVL_2p25.3a"; locus "HERVL_2p25.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0119"; repClass "LTR"; repEnd "423"; repFamily "ERVL"; repLeft "1"; repStart "-30"; chr2 rmsk exon 1285364 1286790 11345 - . gene_id "HERVL_2p25.3a"; transcript_id "HERVL_2p25.3a"; locus "HERVL_2p25.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0119"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4219"; repStart "0"; chr2 rmsk exon 1286791 1286863 553 - . gene_id "HERVL_2p25.3a"; transcript_id "HERVL_2p25.3a"; locus "HERVL_2p25.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0119"; repClass "LTR"; repEnd "73"; repFamily "ERVL"; repLeft "1"; repStart "-380"; ### ERV316A3_2p25.3a ### chr2 rmsk gene 2440429 2445607 . + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0201"; model_cov "3634"; model_pct "69.5"; chr2 rmsk exon 2440429 2440636 301 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-3"; repStart "227"; chr2 rmsk exon 2440641 2441059 986 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "670"; repFamily "ERVL"; repLeft "-4556"; repStart "232"; chr2 rmsk exon 2441580 2441812 986 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "910"; repFamily "ERVL"; repLeft "-4316"; repStart "671"; chr2 rmsk exon 2441908 2443187 3292 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "-3105"; repStart "835"; chr2 rmsk exon 2443232 2443506 3292 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "2416"; repFamily "ERVL"; repLeft "-2810"; repStart "2122"; chr2 rmsk exon 2443833 2444460 2642 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "-2143"; repStart "2417"; chr2 rmsk exon 2444451 2445154 1631 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4515"; chr2 rmsk exon 2445443 2445607 321 + . gene_id "ERV316A3_2p25.3a"; transcript_id "ERV316A3_2p25.3a"; locus "ERV316A3_2p25.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0201"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-50"; repStart "222"; ### ERVLE_2p25.3b ### chr2 rmsk gene 2461808 2463937 . + . gene_id "ERVLE_2p25.3b"; transcript_id "ERVLE_2p25.3b"; locus "ERVLE_2p25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0366"; model_cov "1553"; model_pct "27.4"; chr2 rmsk exon 2461808 2462108 592 + . gene_id "ERVLE_2p25.3b"; transcript_id "ERVLE_2p25.3b"; locus "ERVLE_2p25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0366"; repClass "LTR"; repEnd "3063"; repFamily "ERVL"; repLeft "-2604"; repStart "2736"; chr2 rmsk exon 2462650 2463601 1775 + . gene_id "ERVLE_2p25.3b"; transcript_id "ERVLE_2p25.3b"; locus "ERVLE_2p25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0366"; repClass "LTR"; repEnd "5331"; repFamily "ERVL"; repLeft "-336"; repStart "4369"; chr2 rmsk exon 2463692 2463937 292 + . gene_id "ERVLE_2p25.3b"; transcript_id "ERVLE_2p25.3b"; locus "ERVLE_2p25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0366"; repClass "LTR"; repEnd "5589"; repFamily "ERVL"; repLeft "-78"; repStart "5325"; ### PRIMA4_2p25.3 ### chr2 rmsk gene 2673701 2676457 . - . gene_id "PRIMA4_2p25.3"; transcript_id "PRIMA4_2p25.3"; locus "PRIMA4_2p25.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0023"; model_cov "2774"; model_pct "33.5"; chr2 rmsk exon 2673701 2675840 2375 - . gene_id "PRIMA4_2p25.3"; transcript_id "PRIMA4_2p25.3"; locus "PRIMA4_2p25.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0023"; repClass "LTR"; repEnd "6241"; repFamily "ERV1"; repLeft "4080"; repStart "-2029"; chr2 rmsk exon 2675863 2676457 618 - . gene_id "PRIMA4_2p25.3"; transcript_id "PRIMA4_2p25.3"; locus "PRIMA4_2p25.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0023"; repClass "LTR"; repEnd "3655"; repFamily "ERV1"; repLeft "3042"; repStart "-4615"; ### HERVL_2p25.3b ### chr2 rmsk gene 2676664 2679681 . + . gene_id "HERVL_2p25.3b"; transcript_id "HERVL_2p25.3b"; locus "HERVL_2p25.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0120"; model_cov "2549"; model_pct "45.1"; chr2 rmsk exon 2676664 2679228 19298 + . gene_id "HERVL_2p25.3b"; transcript_id "HERVL_2p25.3b"; locus "HERVL_2p25.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0120"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3105"; chr2 rmsk exon 2679230 2679681 2776 + . gene_id "HERVL_2p25.3b"; transcript_id "HERVL_2p25.3b"; locus "HERVL_2p25.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0120"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLE_2p25.3c ### chr2 rmsk gene 3035957 3037806 . - . gene_id "ERVLE_2p25.3c"; transcript_id "ERVLE_2p25.3c"; locus "ERVLE_2p25.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0367"; model_cov "1313"; model_pct "23.2"; chr2 rmsk exon 3035957 3036536 313 - . gene_id "ERVLE_2p25.3c"; transcript_id "ERVLE_2p25.3c"; locus "ERVLE_2p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0367"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "3868"; repStart "-1103"; chr2 rmsk exon 3037150 3037420 449 - . gene_id "ERVLE_2p25.3c"; transcript_id "ERVLE_2p25.3c"; locus "ERVLE_2p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0367"; repClass "LTR"; repEnd "3302"; repFamily "ERVL"; repLeft "3028"; repStart "-2365"; chr2 rmsk exon 3037461 3037806 594 - . gene_id "ERVLE_2p25.3c"; transcript_id "ERVLE_2p25.3c"; locus "ERVLE_2p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0367"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "2553"; repStart "-2771"; ### ERV316A3_2p25.3b ### chr2 rmsk gene 3261101 3263444 . + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0203"; model_cov "2193"; model_pct "42.0"; chr2 rmsk exon 3261101 3261248 649 + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0203"; repClass "LTR"; repEnd "1535"; repFamily "ERVL"; repLeft "-3691"; repStart "1389"; chr2 rmsk exon 3261380 3261874 672 + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0203"; repClass "LTR"; repEnd "1752"; repFamily "ERVL"; repLeft "-3474"; repStart "1234"; chr2 rmsk exon 3261956 3262396 1167 + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0203"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "-2545"; repStart "2209"; chr2 rmsk exon 3262430 3263328 1352 + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0203"; repClass "LTR"; repEnd "3708"; repFamily "ERVL"; repLeft "-1518"; repStart "2775"; chr2 rmsk exon 3263323 3263444 346 + . gene_id "ERV316A3_2p25.3b"; transcript_id "ERV316A3_2p25.3b"; locus "ERV316A3_2p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0203"; repClass "LTR"; repEnd "4196"; repFamily "ERVL"; repLeft "-1030"; repStart "4072"; ### ERVLB4_2p25.3 ### chr2 rmsk gene 3267103 3270169 . + . gene_id "ERVLB4_2p25.3"; transcript_id "ERVLB4_2p25.3"; locus "ERVLB4_2p25.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0134"; model_cov "1050"; model_pct "18.4"; chr2 rmsk exon 3267103 3267691 1506 + . gene_id "ERVLB4_2p25.3"; transcript_id "ERVLB4_2p25.3"; locus "ERVLB4_2p25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0134"; repClass "LTR"; repEnd "2638"; repFamily "ERVL"; repLeft "-3076"; repStart "2040"; chr2 rmsk exon 3269738 3270169 600 + . gene_id "ERVLB4_2p25.3"; transcript_id "ERVLB4_2p25.3"; locus "ERVLB4_2p25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0134"; repClass "LTR"; repEnd "3873"; repFamily "ERVL"; repLeft "-1841"; repStart "3421"; ### HERVH_2p25.3 ### chr2 rmsk gene 3815549 3821340 . - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0106"; model_cov "5263"; model_pct "68.2"; chr2 rmsk exon 3815549 3815931 2406 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 3815932 3816486 3623 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr2 rmsk exon 3816479 3816732 1659 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "5760"; repStart "-1696"; chr2 rmsk exon 3816729 3817457 5033 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "4712"; repFamily "ERV1"; repLeft "3995"; repStart "-3001"; chr2 rmsk exon 3817471 3820949 18752 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "3734"; repFamily "ERV1"; repLeft "1"; repStart "-3979"; chr2 rmsk exon 3820950 3821340 2489 - . gene_id "HERVH_2p25.3"; transcript_id "HERVH_2p25.3"; locus "HERVH_2p25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0106"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_2p25.3c ### chr2 rmsk gene 4056768 4063326 . + . gene_id "HERVL_2p25.3c"; transcript_id "HERVL_2p25.3c"; locus "HERVL_2p25.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0121"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 4056768 4057205 3264 + . gene_id "HERVL_2p25.3c"; transcript_id "HERVL_2p25.3c"; locus "HERVL_2p25.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0121"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr2 rmsk exon 4057206 4062808 43756 + . gene_id "HERVL_2p25.3c"; transcript_id "HERVL_2p25.3c"; locus "HERVL_2p25.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0121"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 4062809 4063247 3012 + . gene_id "HERVL_2p25.3c"; transcript_id "HERVL_2p25.3c"; locus "HERVL_2p25.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0121"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr2 rmsk exon 4063292 4063326 3012 + . gene_id "HERVL_2p25.3c"; transcript_id "HERVL_2p25.3c"; locus "HERVL_2p25.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0121"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "415"; ### HUERSP3B_2p25.3a ### chr2 rmsk gene 4169315 4173213 . - . gene_id "HUERSP3B_2p25.3a"; transcript_id "HUERSP3B_2p25.3a"; locus "HUERSP3B_2p25.3a"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0015"; model_cov "4107"; model_pct "55.4"; chr2 rmsk exon 4169315 4172686 28023 - . gene_id "HUERSP3B_2p25.3a"; transcript_id "HUERSP3B_2p25.3a"; locus "HUERSP3B_2p25.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0015"; repClass "LTR"; repEnd "6947"; repFamily "ERV1"; repLeft "3356"; repStart "-471"; chr2 rmsk exon 4172728 4173213 28023 - . gene_id "HUERSP3B_2p25.3a"; transcript_id "HUERSP3B_2p25.3a"; locus "HUERSP3B_2p25.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0015"; repClass "LTR"; repEnd "3355"; repFamily "ERV1"; repLeft "2839"; repStart "-4063"; ### HUERSP3B_2p25.3b ### chr2 rmsk gene 4173635 4176880 . - . gene_id "HUERSP3B_2p25.3b"; transcript_id "HUERSP3B_2p25.3b"; locus "HUERSP3B_2p25.3b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0016"; model_cov "2816"; model_pct "38.0"; chr2 rmsk exon 4173635 4176274 28023 - . gene_id "HUERSP3B_2p25.3b"; transcript_id "HUERSP3B_2p25.3b"; locus "HUERSP3B_2p25.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0016"; repClass "LTR"; repEnd "6947"; repFamily "ERV1"; repLeft "4131"; repStart "-471"; chr2 rmsk exon 4176296 4176880 3424 - . gene_id "HUERSP3B_2p25.3b"; transcript_id "HUERSP3B_2p25.3b"; locus "HUERSP3B_2p25.3b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0016"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_2p25.3c ### chr2 rmsk gene 4302238 4303569 . + . gene_id "ERV316A3_2p25.3c"; transcript_id "ERV316A3_2p25.3c"; locus "ERV316A3_2p25.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0204"; model_cov "1331"; model_pct "25.5"; chr2 rmsk exon 4302238 4303569 1431 + . gene_id "ERV316A3_2p25.3c"; transcript_id "ERV316A3_2p25.3c"; locus "ERV316A3_2p25.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0204"; repClass "LTR"; repEnd "2473"; repFamily "ERVL"; repLeft "-2753"; repStart "1142"; ### ERV316A3_2p25.3d ### chr2 rmsk gene 4303969 4305770 . - . gene_id "ERV316A3_2p25.3d"; transcript_id "ERV316A3_2p25.3d"; locus "ERV316A3_2p25.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0205"; model_cov "1288"; model_pct "24.6"; chr2 rmsk exon 4303969 4304267 562 - . gene_id "ERV316A3_2p25.3d"; transcript_id "ERV316A3_2p25.3d"; locus "ERV316A3_2p25.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0205"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "3"; repStart "-106"; chr2 rmsk exon 4304275 4304499 573 - . gene_id "ERV316A3_2p25.3d"; transcript_id "ERV316A3_2p25.3d"; locus "ERV316A3_2p25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0205"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "4973"; repStart "-21"; chr2 rmsk exon 4304526 4304922 1121 - . gene_id "ERV316A3_2p25.3d"; transcript_id "ERV316A3_2p25.3d"; locus "ERV316A3_2p25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0205"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4499"; repStart "-305"; chr2 rmsk exon 4305158 4305770 1086 - . gene_id "ERV316A3_2p25.3d"; transcript_id "ERV316A3_2p25.3d"; locus "ERV316A3_2p25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0205"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "3846"; repStart "-746"; ### HERVL_2p25.2 ### chr2 rmsk gene 4484113 4490647 . - . gene_id "HERVL_2p25.2"; transcript_id "HERVL_2p25.2"; locus "HERVL_2p25.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0123"; model_cov "5652"; model_pct "100.0"; chr2 rmsk exon 4484113 4484554 3116 - . gene_id "HERVL_2p25.2"; transcript_id "HERVL_2p25.2"; locus "HERVL_2p25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0123"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 4484556 4490202 42072 - . gene_id "HERVL_2p25.2"; transcript_id "HERVL_2p25.2"; locus "HERVL_2p25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0123"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr2 rmsk exon 4490203 4490647 3080 - . gene_id "HERVL_2p25.2"; transcript_id "HERVL_2p25.2"; locus "HERVL_2p25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0123"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_2p25.2 ### chr2 rmsk gene 5000769 5006730 . + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0107"; model_cov "4903"; model_pct "63.6"; chr2 rmsk exon 5000769 5001216 3391 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 5001219 5004382 15573 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "1"; chr2 rmsk exon 5004380 5004526 835 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 5004517 5005021 3367 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 5005024 5005684 4049 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 5005686 5005901 1271 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 5005902 5006280 2361 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 5006281 5006730 3475 + . gene_id "HERVH_2p25.2"; transcript_id "HERVH_2p25.2"; locus "HERVH_2p25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0107"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_2p25.2a ### chr2 rmsk gene 5042589 5044478 . - . gene_id "ERVLE_2p25.2a"; transcript_id "ERVLE_2p25.2a"; locus "ERVLE_2p25.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0368"; model_cov "646"; model_pct "11.4"; chr2 rmsk exon 5042589 5042756 412 - . gene_id "ERVLE_2p25.2a"; transcript_id "ERVLE_2p25.2a"; locus "ERVLE_2p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0368"; repClass "LTR"; repEnd "948"; repFamily "ERVL"; repLeft "778"; repStart "-4719"; chr2 rmsk exon 5043214 5043432 589 - . gene_id "ERVLE_2p25.2a"; transcript_id "ERVLE_2p25.2a"; locus "ERVLE_2p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0368"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "562"; repStart "-4884"; chr2 rmsk exon 5043448 5043704 770 - . gene_id "ERVLE_2p25.2a"; transcript_id "ERVLE_2p25.2a"; locus "ERVLE_2p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0368"; repClass "LTR"; repEnd "490"; repFamily "ERVL"; repLeft "235"; repStart "-5177"; chr2 rmsk exon 5043968 5044478 666 - . gene_id "ERVLE_2p25.2a"; transcript_id "ERVLE_2p25.2a"; locus "ERVLE_2p25.2a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0368"; repClass "LTR"; repEnd "557"; repFamily "ERVL"; repLeft "12"; repStart "-71"; ### ERVL_2p25.2 ### chr2 rmsk gene 5414971 5417124 . - . gene_id "ERVL_2p25.2"; transcript_id "ERVL_2p25.2"; locus "ERVL_2p25.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0031"; model_cov "1283"; model_pct "22.3"; chr2 rmsk exon 5414971 5415506 2351 - . gene_id "ERVL_2p25.2"; transcript_id "ERVL_2p25.2"; locus "ERVL_2p25.2"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0031"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "4"; repStart "-1"; chr2 rmsk exon 5415814 5417124 5274 - . gene_id "ERVL_2p25.2"; transcript_id "ERVL_2p25.2"; locus "ERVL_2p25.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0031"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "4473"; repStart "-1"; ### ERVLE_2p25.2b ### chr2 rmsk gene 5818618 5820022 . - . gene_id "ERVLE_2p25.2b"; transcript_id "ERVLE_2p25.2b"; locus "ERVLE_2p25.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0369"; model_cov "828"; model_pct "14.6"; chr2 rmsk exon 5818618 5818995 631 - . gene_id "ERVLE_2p25.2b"; transcript_id "ERVLE_2p25.2b"; locus "ERVLE_2p25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0369"; repClass "LTR"; repEnd "1344"; repFamily "ERVL"; repLeft "941"; repStart "-4323"; chr2 rmsk exon 5819590 5820022 445 - . gene_id "ERVLE_2p25.2b"; transcript_id "ERVLE_2p25.2b"; locus "ERVLE_2p25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0369"; repClass "LTR"; repEnd "574"; repFamily "ERVL"; repLeft "149"; repStart "-5093"; ### HUERSP2_2p25.2a ### chr2 rmsk gene 6683355 6684588 . - . gene_id "HUERSP2_2p25.2a"; transcript_id "HUERSP2_2p25.2a"; locus "HUERSP2_2p25.2a"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0013"; model_cov "1054"; model_pct "34.1"; chr2 rmsk exon 6683355 6683544 1236 - . gene_id "HUERSP2_2p25.2a"; transcript_id "HUERSP2_2p25.2a"; locus "HUERSP2_2p25.2a"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0013"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "3"; repStart "-610"; chr2 rmsk exon 6683547 6684588 12128 - . gene_id "HUERSP2_2p25.2a"; transcript_id "HUERSP2_2p25.2a"; locus "HUERSP2_2p25.2a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0013"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2034"; repStart "0"; ### HUERSP2_2p25.2b ### chr2 rmsk gene 6684655 6687451 . - . gene_id "HUERSP2_2p25.2b"; transcript_id "HUERSP2_2p25.2b"; locus "HUERSP2_2p25.2b"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0014"; model_cov "2031"; model_pct "65.8"; chr2 rmsk exon 6684655 6686659 12128 - . gene_id "HUERSP2_2p25.2b"; transcript_id "HUERSP2_2p25.2b"; locus "HUERSP2_2p25.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0014"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1057"; repStart "0"; chr2 rmsk exon 6686661 6687451 5261 - . gene_id "HUERSP2_2p25.2b"; transcript_id "HUERSP2_2p25.2b"; locus "HUERSP2_2p25.2b"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0014"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HUERSP3_2p25.2 ### chr2 rmsk gene 6838364 6846887 . - . gene_id "HUERSP3_2p25.2"; transcript_id "HUERSP3_2p25.2"; locus "HUERSP3_2p25.2"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0017"; model_cov "8522"; model_pct "95.5"; chr2 rmsk exon 6838364 6846789 32544 - . gene_id "HUERSP3_2p25.2"; transcript_id "HUERSP3_2p25.2"; locus "HUERSP3_2p25.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0017"; repClass "LTR"; repEnd "8695"; repFamily "ERV1"; repLeft "262"; repStart "-224"; chr2 rmsk exon 6846794 6846887 603 - . gene_id "HUERSP3_2p25.2"; transcript_id "HUERSP3_2p25.2"; locus "HUERSP3_2p25.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0017"; repClass "LTR"; repEnd "1822"; repFamily "ERV1"; repLeft "1733"; repStart "-7097"; ### MER101_2p25.2 ### chr2 rmsk gene 6869773 6876489 . + . gene_id "MER101_2p25.2"; transcript_id "MER101_2p25.2"; locus "MER101_2p25.2"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0045"; model_cov "7915"; model_pct "100.0"; chr2 rmsk exon 6869773 6870225 2403 + . gene_id "MER101_2p25.2"; transcript_id "MER101_2p25.2"; locus "MER101_2p25.2"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0045"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 6870230 6873927 27324 + . gene_id "MER101_2p25.2"; transcript_id "MER101_2p25.2"; locus "MER101_2p25.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0045"; repClass "LTR"; repEnd "3737"; repFamily "ERV1"; repLeft "-2902"; repStart "5"; chr2 rmsk exon 6874361 6876489 27324 + . gene_id "MER101_2p25.2"; transcript_id "MER101_2p25.2"; locus "MER101_2p25.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0045"; repClass "LTR"; repEnd "6469"; repFamily "ERV1"; repLeft "-170"; repStart "2286"; ### ERVLB4_2p25.1a ### chr2 rmsk gene 7183894 7184578 . - . gene_id "ERVLB4_2p25.1a"; transcript_id "ERVLB4_2p25.1a"; locus "ERVLB4_2p25.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0137"; model_cov "757"; model_pct "13.2"; chr2 rmsk exon 7183894 7184578 933 - . gene_id "ERVLB4_2p25.1a"; transcript_id "ERVLB4_2p25.1a"; locus "ERVLB4_2p25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0137"; repClass "LTR"; repEnd "5435"; repFamily "ERVL"; repLeft "4678"; repStart "-279"; ### HERVL_2p25.1 ### chr2 rmsk gene 7296146 7298780 . - . gene_id "HERVL_2p25.1"; transcript_id "HERVL_2p25.1"; locus "HERVL_2p25.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0125"; model_cov "2106"; model_pct "37.2"; chr2 rmsk exon 7296146 7296693 2121 - . gene_id "HERVL_2p25.1"; transcript_id "HERVL_2p25.1"; locus "HERVL_2p25.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0125"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr2 rmsk exon 7296694 7298780 14805 - . gene_id "HERVL_2p25.1"; transcript_id "HERVL_2p25.1"; locus "HERVL_2p25.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0125"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3548"; repStart "0"; ### HERVH_2p25.1 ### chr2 rmsk gene 7872706 7878891 . - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0108"; model_cov "4867"; model_pct "63.1"; chr2 rmsk exon 7872706 7873156 3587 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 7873157 7873531 2678 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 7873530 7873747 1334 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 7873771 7874391 4134 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "4488"; repStart "-2605"; chr2 rmsk exon 7874394 7874880 3148 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 7874871 7875020 980 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 7875015 7878438 17050 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 7878441 7878891 3475 - . gene_id "HERVH_2p25.1"; transcript_id "HERVH_2p25.1"; locus "HERVH_2p25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0108"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2p25.1a ### chr2 rmsk gene 8296771 8302648 . - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0211"; model_cov "4409"; model_pct "84.4"; chr2 rmsk exon 8296771 8297121 839 - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0211"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "7"; repStart "-67"; chr2 rmsk exon 8297197 8299795 4398 - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0211"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "2501"; repStart "-50"; chr2 rmsk exon 8300032 8301556 2055 - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0211"; repClass "LTR"; repEnd "2493"; repFamily "ERVL"; repLeft "884"; repStart "-2733"; chr2 rmsk exon 8301625 8301753 308 - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0211"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "287"; repStart "-4814"; chr2 rmsk exon 8302351 8302648 771 - . gene_id "ERV316A3_2p25.1a"; transcript_id "ERV316A3_2p25.1a"; locus "ERV316A3_2p25.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0211"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "126"; repStart "-13"; ### PABLA_2p25.1 ### chr2 rmsk gene 10199041 10202321 . - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0012"; model_cov "2845"; model_pct "56.7"; chr2 rmsk exon 10199041 10199216 917 - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0012"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "4796"; repStart "-73"; chr2 rmsk exon 10199187 10199499 3798 - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0012"; repClass "LTR"; repEnd "4732"; repFamily "ERV1"; repLeft "4464"; repStart "-283"; chr2 rmsk exon 10199810 10199842 3798 - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0012"; repClass "LTR"; repEnd "4463"; repFamily "ERV1"; repLeft "4431"; repStart "-552"; chr2 rmsk exon 10200132 10200864 8347 - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0012"; repClass "LTR"; repEnd "4334"; repFamily "ERV1"; repLeft "3076"; repStart "-681"; chr2 rmsk exon 10201179 10202321 8347 - . gene_id "PABLA_2p25.1"; transcript_id "PABLA_2p25.1"; locus "PABLA_2p25.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0012"; repClass "LTR"; repEnd "4006"; repFamily "ERV1"; repLeft "2865"; repStart "-1009"; ### ERV316A3_2p25.1b ### chr2 rmsk gene 11395773 11400825 . - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0213"; model_cov "3004"; model_pct "57.5"; chr2 rmsk exon 11395773 11396207 858 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "2"; repStart "-1"; chr2 rmsk exon 11396215 11398546 7301 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "1640"; repStart "-1224"; chr2 rmsk exon 11398678 11398757 7301 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "1639"; repFamily "ERVL"; repLeft "1550"; repStart "-3587"; chr2 rmsk exon 11398785 11398957 7301 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "1549"; repFamily "ERVL"; repLeft "1377"; repStart "-3677"; chr2 rmsk exon 11399871 11400220 1176 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "921"; repFamily "ERVL"; repLeft "540"; repStart "-4305"; chr2 rmsk exon 11400391 11400825 1054 - . gene_id "ERV316A3_2p25.1b"; transcript_id "ERV316A3_2p25.1b"; locus "ERV316A3_2p25.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0213"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-14"; repStart "-1"; ### HERVH48_2p25.1 ### chr2 rmsk gene 11425312 11426640 . + . gene_id "HERVH48_2p25.1"; transcript_id "HERVH48_2p25.1"; locus "HERVH48_2p25.1"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0008"; model_cov "857"; model_pct "12.9"; chr2 rmsk exon 11425312 11426226 6087 + . gene_id "HERVH48_2p25.1"; transcript_id "HERVH48_2p25.1"; locus "HERVH48_2p25.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0008"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "5797"; chr2 rmsk exon 11426227 11426640 3063 + . gene_id "HERVH48_2p25.1"; transcript_id "HERVH48_2p25.1"; locus "HERVH48_2p25.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0008"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_2p25.1b ### chr2 rmsk gene 11460960 11462158 . - . gene_id "ERVLB4_2p25.1b"; transcript_id "ERVLB4_2p25.1b"; locus "ERVLB4_2p25.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0140"; model_cov "911"; model_pct "15.9"; chr2 rmsk exon 11460960 11461340 4692 - . gene_id "ERVLB4_2p25.1b"; transcript_id "ERVLB4_2p25.1b"; locus "ERVLB4_2p25.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0140"; repClass "LTR"; repEnd "913"; repFamily "ERVL"; repLeft "517"; repStart "-4801"; chr2 rmsk exon 11461653 11462158 4692 - . gene_id "ERVLB4_2p25.1b"; transcript_id "ERVLB4_2p25.1b"; locus "ERVLB4_2p25.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0140"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "1"; repStart "-5198"; ### ERVLB4_2p25.1c ### chr2 rmsk gene 11911422 11912750 . - . gene_id "ERVLB4_2p25.1c"; transcript_id "ERVLB4_2p25.1c"; locus "ERVLB4_2p25.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0141"; model_cov "1350"; model_pct "23.6"; chr2 rmsk exon 11911422 11911553 621 - . gene_id "ERVLB4_2p25.1c"; transcript_id "ERVLB4_2p25.1c"; locus "ERVLB4_2p25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0141"; repClass "LTR"; repEnd "2127"; repFamily "ERVL"; repLeft "1994"; repStart "-3587"; chr2 rmsk exon 11911556 11911645 444 - . gene_id "ERVLB4_2p25.1c"; transcript_id "ERVLB4_2p25.1c"; locus "ERVLB4_2p25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0141"; repClass "LTR"; repEnd "2079"; repFamily "ERVL"; repLeft "1988"; repStart "-3635"; chr2 rmsk exon 11911645 11912750 5618 - . gene_id "ERVLB4_2p25.1c"; transcript_id "ERVLB4_2p25.1c"; locus "ERVLB4_2p25.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0141"; repClass "LTR"; repEnd "2077"; repFamily "ERVL"; repLeft "951"; repStart "-3637"; ### HERVH_2p24.3a ### chr2 rmsk gene 12569680 12575439 . + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0109"; model_cov "4905"; model_pct "63.6"; chr2 rmsk exon 12569680 12570109 2516 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 12570110 12573174 15687 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 12573154 12573300 827 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 12573291 12573791 3220 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 12573794 12574424 3527 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 12574426 12574634 1288 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 12574635 12574997 2134 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "7704"; repFamily "ERV1"; repLeft "-9"; repStart "7324"; chr2 rmsk exon 12575007 12575439 2611 + . gene_id "HERVH_2p24.3a"; transcript_id "HERVH_2p24.3a"; locus "HERVH_2p24.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0109"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_2p24.3b ### chr2 rmsk gene 12626335 12632257 . + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0110"; model_cov "5061"; model_pct "65.6"; chr2 rmsk exon 12626335 12626785 3470 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 12626788 12630049 20597 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr2 rmsk exon 12630040 12630540 3324 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 12630543 12631203 4247 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 12631205 12631421 1387 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 12631420 12631799 2699 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 12631800 12632257 3386 + . gene_id "HERVH_2p24.3b"; transcript_id "HERVH_2p24.3b"; locus "HERVH_2p24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0110"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2p24.3a ### chr2 rmsk gene 12749922 12751680 . - . gene_id "ERV316A3_2p24.3a"; transcript_id "ERV316A3_2p24.3a"; locus "ERV316A3_2p24.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0216"; model_cov "1803"; model_pct "34.5"; chr2 rmsk exon 12749922 12751680 3667 - . gene_id "ERV316A3_2p24.3a"; transcript_id "ERV316A3_2p24.3a"; locus "ERV316A3_2p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0216"; repClass "LTR"; repEnd "2811"; repFamily "ERVL"; repLeft "1008"; repStart "-2415"; ### MER4_2p24.3a ### chr2 rmsk gene 13084386 13088256 . + . gene_id "MER4_2p24.3a"; transcript_id "MER4_2p24.3a"; locus "MER4_2p24.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0072"; model_cov "2911"; model_pct "44.1"; chr2 rmsk exon 13084386 13084955 2026 + . gene_id "MER4_2p24.3a"; transcript_id "MER4_2p24.3a"; locus "MER4_2p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0072"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "-3734"; repStart "2401"; chr2 rmsk exon 13085358 13087807 11153 + . gene_id "MER4_2p24.3a"; transcript_id "MER4_2p24.3a"; locus "MER4_2p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0072"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4148"; chr2 rmsk exon 13087814 13088256 2613 + . gene_id "MER4_2p24.3a"; transcript_id "MER4_2p24.3a"; locus "MER4_2p24.3a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0072"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_2p24.3c ### chr2 rmsk gene 13163759 13169724 . - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0111"; model_cov "5047"; model_pct "65.4"; chr2 rmsk exon 13163759 13164218 3652 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 13164219 13164597 2362 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 13164596 13164814 1391 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 13164853 13165208 2326 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "5098"; repFamily "ERV1"; repLeft "4742"; repStart "-2615"; chr2 rmsk exon 13165258 13165447 1138 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2795"; repStart "-4726"; chr2 rmsk exon 13165446 13165684 1685 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "4740"; repFamily "ERV1"; repLeft "4488"; repStart "-2973"; chr2 rmsk exon 13165687 13166187 3239 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 13166178 13166327 947 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 13166322 13169261 15647 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 13169264 13169724 3551 - . gene_id "HERVH_2p24.3c"; transcript_id "HERVH_2p24.3c"; locus "HERVH_2p24.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0111"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2p24.3b ### chr2 rmsk gene 13325730 13330417 . - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0218"; model_cov "4283"; model_pct "82.0"; chr2 rmsk exon 13325730 13326598 1007 - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0218"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "3535"; repStart "-793"; chr2 rmsk exon 13326590 13327629 4192 - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0218"; repClass "LTR"; repEnd "3030"; repFamily "ERVL"; repLeft "1800"; repStart "-2196"; chr2 rmsk exon 13327664 13329775 4192 - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0218"; repClass "LTR"; repEnd "2227"; repFamily "ERVL"; repLeft "72"; repStart "-2999"; chr2 rmsk exon 13329873 13329901 431 - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0218"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "221"; repStart "-205"; chr2 rmsk exon 13330276 13330417 431 - . gene_id "ERV316A3_2p24.3b"; transcript_id "ERV316A3_2p24.3b"; locus "ERV316A3_2p24.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0218"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "64"; repStart "-231"; ### HARLEQUIN_2p24.3 ### chr2 rmsk gene 13525956 13533609 . - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0027"; model_cov "6233"; model_pct "90.4"; chr2 rmsk exon 13525956 13526417 3616 - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0027"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 13526418 13531950 42619 - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0027"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1402"; repStart "0"; chr2 rmsk exon 13531936 13531986 5181 - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0027"; repClass "LTR"; repEnd "996"; repFamily "ERV1"; repLeft "941"; repStart "-5900"; chr2 rmsk exon 13532040 13532727 5181 - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0027"; repClass "LTR"; repEnd "940"; repFamily "ERV1"; repLeft "256"; repStart "-5956"; chr2 rmsk exon 13533097 13533609 3252 - . gene_id "HARLEQUIN_2p24.3"; transcript_id "HARLEQUIN_2p24.3"; locus "HARLEQUIN_2p24.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0027"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_2p24.3 ### chr2 rmsk gene 13645118 13648942 . - . gene_id "MER41_2p24.3"; transcript_id "MER41_2p24.3"; locus "MER41_2p24.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0041"; model_cov "4790"; model_pct "80.6"; chr2 rmsk exon 13645118 13648942 13452 - . gene_id "MER41_2p24.3"; transcript_id "MER41_2p24.3"; locus "MER41_2p24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0041"; repClass "LTR"; repEnd "5422"; repFamily "ERV1"; repLeft "632"; repStart "-524"; ### HERVIP10F_2p24.3 ### chr2 rmsk gene 13677607 13678556 . + . gene_id "HERVIP10F_2p24.3"; transcript_id "HERVIP10F_2p24.3"; locus "HERVIP10F_2p24.3"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0012"; model_cov "903"; model_pct "11.7"; chr2 rmsk exon 13677607 13678456 1433 + . gene_id "HERVIP10F_2p24.3"; transcript_id "HERVIP10F_2p24.3"; locus "HERVIP10F_2p24.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0012"; repClass "LTR"; repEnd "751"; repFamily "ERV1"; repLeft "-6986"; repStart "-45"; chr2 rmsk exon 13678453 13678556 318 + . gene_id "HERVIP10F_2p24.3"; transcript_id "HERVIP10F_2p24.3"; locus "HERVIP10F_2p24.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0012"; repClass "LTR"; repEnd "1101"; repFamily "ERV1"; repLeft "-6636"; repStart "994"; ### HERVIP10FH_2p24.3a ### chr2 rmsk gene 13678608 13680658 . + . gene_id "HERVIP10FH_2p24.3a"; transcript_id "HERVIP10FH_2p24.3a"; locus "HERVIP10FH_2p24.3a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0016"; model_cov "1653"; model_pct "32.4"; chr2 rmsk exon 13678608 13679128 1357 + . gene_id "HERVIP10FH_2p24.3a"; transcript_id "HERVIP10FH_2p24.3a"; locus "HERVIP10FH_2p24.3a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0016"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "-3990"; repStart "709"; chr2 rmsk exon 13679109 13680597 8358 + . gene_id "HERVIP10FH_2p24.3a"; transcript_id "HERVIP10FH_2p24.3a"; locus "HERVIP10FH_2p24.3a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0016"; repClass "LTR"; repEnd "2286"; repFamily "ERV1"; repLeft "-2816"; repStart "1107"; chr2 rmsk exon 13680588 13680658 378 + . gene_id "HERVIP10FH_2p24.3a"; transcript_id "HERVIP10FH_2p24.3a"; locus "HERVIP10FH_2p24.3a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0016"; repClass "LTR"; repEnd "2099"; repFamily "ERV1"; repLeft "-3003"; repStart "2028"; ### HERVIP10FH_2p24.3b ### chr2 rmsk gene 13680687 13682534 . + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0017"; model_cov "1325"; model_pct "26.0"; chr2 rmsk exon 13680687 13681223 2739 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "1325"; repFamily "ERV1"; repLeft "-3777"; repStart "773"; chr2 rmsk exon 13681211 13681820 3681 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "4354"; repFamily "ERV1"; repLeft "-748"; repStart "3746"; chr2 rmsk exon 13681817 13681908 342 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "-164"; repStart "4844"; chr2 rmsk exon 13681907 13681976 331 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "5096"; repFamily "ERV1"; repLeft "-6"; repStart "5025"; chr2 rmsk exon 13681980 13682060 340 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "-551"; repStart "1"; chr2 rmsk exon 13682084 13682534 2209 + . gene_id "HERVIP10FH_2p24.3b"; transcript_id "HERVIP10FH_2p24.3b"; locus "HERVIP10FH_2p24.3b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0017"; repClass "LTR"; repEnd "602"; repFamily "ERV1"; repLeft "-31"; repStart "161"; ### HUERSP3B_2p24.3 ### chr2 rmsk gene 13684812 13687809 . + . gene_id "HUERSP3B_2p24.3"; transcript_id "HUERSP3B_2p24.3"; locus "HUERSP3B_2p24.3"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0017"; model_cov "2300"; model_pct "31.0"; chr2 rmsk exon 13684812 13685947 11451 + . gene_id "HUERSP3B_2p24.3"; transcript_id "HUERSP3B_2p24.3"; locus "HUERSP3B_2p24.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0017"; repClass "LTR"; repEnd "4148"; repFamily "ERV1"; repLeft "-3270"; repStart "3073"; chr2 rmsk exon 13686235 13687010 11451 + . gene_id "HUERSP3B_2p24.3"; transcript_id "HUERSP3B_2p24.3"; locus "HUERSP3B_2p24.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0017"; repClass "LTR"; repEnd "4911"; repFamily "ERV1"; repLeft "-2507"; repStart "4149"; chr2 rmsk exon 13687321 13687809 11451 + . gene_id "HUERSP3B_2p24.3"; transcript_id "HUERSP3B_2p24.3"; locus "HUERSP3B_2p24.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0017"; repClass "LTR"; repEnd "5375"; repFamily "ERV1"; repLeft "-2043"; repStart "4912"; ### ERVLB4_2p24.3a ### chr2 rmsk gene 13708822 13710483 . + . gene_id "ERVLB4_2p24.3a"; transcript_id "ERVLB4_2p24.3a"; locus "ERVLB4_2p24.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0142"; model_cov "1271"; model_pct "22.2"; chr2 rmsk exon 13708822 13709059 1044 + . gene_id "ERVLB4_2p24.3a"; transcript_id "ERVLB4_2p24.3a"; locus "ERVLB4_2p24.3a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0142"; repClass "LTR"; repEnd "276"; repFamily "ERVL"; repLeft "-138"; repStart "1"; chr2 rmsk exon 13709060 13709287 1286 + . gene_id "ERVLB4_2p24.3a"; transcript_id "ERVLB4_2p24.3a"; locus "ERVLB4_2p24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0142"; repClass "LTR"; repEnd "1064"; repFamily "ERVL"; repLeft "-4650"; repStart "837"; chr2 rmsk exon 13709311 13710337 5607 + . gene_id "ERVLB4_2p24.3a"; transcript_id "ERVLB4_2p24.3a"; locus "ERVLB4_2p24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0142"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4670"; chr2 rmsk exon 13710338 13710483 983 + . gene_id "ERVLB4_2p24.3a"; transcript_id "ERVLB4_2p24.3a"; locus "ERVLB4_2p24.3a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0142"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-268"; repStart "1"; ### MER4_2p24.3b ### chr2 rmsk gene 13742205 13744870 . + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0073"; model_cov "1796"; model_pct "27.2"; chr2 rmsk exon 13742205 13742666 3069 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0073"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 13742672 13743225 2477 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "-1173"; repFamily "ERV1"; repLeft "-7771"; repStart "-1671"; chr2 rmsk exon 13743213 13743282 385 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "-5799"; repStart "733"; chr2 rmsk exon 13743353 13743403 311 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "-5712"; repStart "836"; chr2 rmsk exon 13743402 13743706 1147 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "993"; chr2 rmsk exon 13743739 13744408 3908 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1803"; chr2 rmsk exon 13744653 13744870 1159 + . gene_id "MER4_2p24.3b"; transcript_id "MER4_2p24.3b"; locus "MER4_2p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0073"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3646"; repStart "2737"; ### MER4_2p24.3c ### chr2 rmsk gene 13750923 13753468 . + . gene_id "MER4_2p24.3c"; transcript_id "MER4_2p24.3c"; locus "MER4_2p24.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0074"; model_cov "2143"; model_pct "32.5"; chr2 rmsk exon 13750923 13752001 6054 + . gene_id "MER4_2p24.3c"; transcript_id "MER4_2p24.3c"; locus "MER4_2p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0074"; repClass "LTR"; repEnd "5025"; repFamily "ERV1"; repLeft "-1573"; repStart "3921"; chr2 rmsk exon 13752004 13753021 5553 + . gene_id "MER4_2p24.3c"; transcript_id "MER4_2p24.3c"; locus "MER4_2p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0074"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5557"; chr2 rmsk exon 13753022 13753468 2902 + . gene_id "MER4_2p24.3c"; transcript_id "MER4_2p24.3c"; locus "MER4_2p24.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0074"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2p24.3a ### chr2 rmsk gene 14022959 14023658 . + . gene_id "ERVLE_2p24.3a"; transcript_id "ERVLE_2p24.3a"; locus "ERVLE_2p24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0375"; model_cov "715"; model_pct "12.6"; chr2 rmsk exon 14022959 14023349 550 + . gene_id "ERVLE_2p24.3a"; transcript_id "ERVLE_2p24.3a"; locus "ERVLE_2p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0375"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-5097"; repStart "150"; chr2 rmsk exon 14023366 14023658 422 + . gene_id "ERVLE_2p24.3a"; transcript_id "ERVLE_2p24.3a"; locus "ERVLE_2p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0375"; repClass "LTR"; repEnd "952"; repFamily "ERVL"; repLeft "-4715"; repStart "657"; ### ERVLB4_2p24.3b ### chr2 rmsk gene 14142637 14143273 . + . gene_id "ERVLB4_2p24.3b"; transcript_id "ERVLB4_2p24.3b"; locus "ERVLB4_2p24.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0143"; model_cov "648"; model_pct "11.3"; chr2 rmsk exon 14142637 14143273 2979 + . gene_id "ERVLB4_2p24.3b"; transcript_id "ERVLB4_2p24.3b"; locus "ERVLB4_2p24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0143"; repClass "LTR"; repEnd "702"; repFamily "ERVL"; repLeft "-5012"; repStart "54"; ### ERVLE_2p24.3b ### chr2 rmsk gene 14382039 14382874 . - . gene_id "ERVLE_2p24.3b"; transcript_id "ERVLE_2p24.3b"; locus "ERVLE_2p24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0377"; model_cov "841"; model_pct "14.8"; chr2 rmsk exon 14382039 14382874 2133 - . gene_id "ERVLE_2p24.3b"; transcript_id "ERVLE_2p24.3b"; locus "ERVLE_2p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0377"; repClass "LTR"; repEnd "4714"; repFamily "ERVL"; repLeft "3873"; repStart "-953"; ### ERVLE_2p24.3c ### chr2 rmsk gene 14450372 14451148 . - . gene_id "ERVLE_2p24.3c"; transcript_id "ERVLE_2p24.3c"; locus "ERVLE_2p24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0378"; model_cov "783"; model_pct "13.8"; chr2 rmsk exon 14450372 14451148 1715 - . gene_id "ERVLE_2p24.3c"; transcript_id "ERVLE_2p24.3c"; locus "ERVLE_2p24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0378"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "4598"; repStart "-286"; ### ERVLE_2p24.3d ### chr2 rmsk gene 14460771 14462027 . - . gene_id "ERVLE_2p24.3d"; transcript_id "ERVLE_2p24.3d"; locus "ERVLE_2p24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0379"; model_cov "929"; model_pct "16.4"; chr2 rmsk exon 14460771 14461303 1468 - . gene_id "ERVLE_2p24.3d"; transcript_id "ERVLE_2p24.3d"; locus "ERVLE_2p24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0379"; repClass "LTR"; repEnd "3803"; repFamily "ERVL"; repLeft "3267"; repStart "-1864"; chr2 rmsk exon 14461621 14462027 1468 - . gene_id "ERVLE_2p24.3d"; transcript_id "ERVLE_2p24.3d"; locus "ERVLE_2p24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0379"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "2873"; repStart "-2401"; ### ERV316A3_2p24.3c ### chr2 rmsk gene 14875746 14878608 . - . gene_id "ERV316A3_2p24.3c"; transcript_id "ERV316A3_2p24.3c"; locus "ERV316A3_2p24.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0221"; model_cov "2390"; model_pct "45.7"; chr2 rmsk exon 14875746 14878106 2715 - . gene_id "ERV316A3_2p24.3c"; transcript_id "ERV316A3_2p24.3c"; locus "ERV316A3_2p24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0221"; repClass "LTR"; repEnd "2499"; repFamily "ERVL"; repLeft "109"; repStart "-2727"; chr2 rmsk exon 14878191 14878608 1252 - . gene_id "ERV316A3_2p24.3c"; transcript_id "ERV316A3_2p24.3c"; locus "ERV316A3_2p24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0221"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "3"; repStart "-8"; ### ERVLB4_2p24.3c ### chr2 rmsk gene 15579444 15581173 . + . gene_id "ERVLB4_2p24.3c"; transcript_id "ERVLB4_2p24.3c"; locus "ERVLB4_2p24.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0144"; model_cov "1034"; model_pct "18.1"; chr2 rmsk exon 15579444 15580174 4597 + . gene_id "ERVLB4_2p24.3c"; transcript_id "ERVLB4_2p24.3c"; locus "ERVLB4_2p24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0144"; repClass "LTR"; repEnd "5409"; repFamily "ERVL"; repLeft "-305"; repStart "4679"; chr2 rmsk exon 15580432 15580732 1771 + . gene_id "ERVLB4_2p24.3c"; transcript_id "ERVLB4_2p24.3c"; locus "ERVLB4_2p24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0144"; repClass "LTR"; repEnd "5706"; repFamily "ERVL"; repLeft "-8"; repStart "5402"; chr2 rmsk exon 15580741 15580811 1933 + . gene_id "ERVLB4_2p24.3c"; transcript_id "ERVLB4_2p24.3c"; locus "ERVLB4_2p24.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0144"; repClass "LTR"; repEnd "64"; repFamily "ERVL"; repLeft "-350"; repStart "1"; chr2 rmsk exon 15581120 15581173 1933 + . gene_id "ERVLB4_2p24.3c"; transcript_id "ERVLB4_2p24.3c"; locus "ERVLB4_2p24.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0144"; repClass "LTR"; repEnd "117"; repFamily "ERVL"; repLeft "-297"; repStart "65"; ### ERVLE_2p24.2a ### chr2 rmsk gene 16526296 16530065 . + . gene_id "ERVLE_2p24.2a"; transcript_id "ERVLE_2p24.2a"; locus "ERVLE_2p24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0381"; model_cov "3614"; model_pct "63.8"; chr2 rmsk exon 16526296 16526988 1140 + . gene_id "ERVLE_2p24.2a"; transcript_id "ERVLE_2p24.2a"; locus "ERVLE_2p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0381"; repClass "LTR"; repEnd "806"; repFamily "ERVL"; repLeft "-4861"; repStart "107"; chr2 rmsk exon 16527069 16527240 6693 + . gene_id "ERVLE_2p24.2a"; transcript_id "ERVLE_2p24.2a"; locus "ERVLE_2p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0381"; repClass "LTR"; repEnd "1107"; repFamily "ERVL"; repLeft "-4560"; repStart "922"; chr2 rmsk exon 16527455 16530065 6693 + . gene_id "ERVLE_2p24.2a"; transcript_id "ERVLE_2p24.2a"; locus "ERVLE_2p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0381"; repClass "LTR"; repEnd "3838"; repFamily "ERVL"; repLeft "-1829"; repStart "1108"; ### HERVL_2p24.2a ### chr2 rmsk gene 16747949 16754409 . - . gene_id "HERVL_2p24.2a"; transcript_id "HERVL_2p24.2a"; locus "HERVL_2p24.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0126"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 16747949 16748383 3386 - . gene_id "HERVL_2p24.2a"; transcript_id "HERVL_2p24.2a"; locus "HERVL_2p24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0126"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr2 rmsk exon 16748386 16753970 44245 - . gene_id "HERVL_2p24.2a"; transcript_id "HERVL_2p24.2a"; locus "HERVL_2p24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0126"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 16753971 16754409 3322 - . gene_id "HERVL_2p24.2a"; transcript_id "HERVL_2p24.2a"; locus "HERVL_2p24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0126"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "6"; repStart "0"; ### HERVH_2p24.2 ### chr2 rmsk gene 16791945 16797703 . - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0112"; model_cov "4872"; model_pct "63.2"; chr2 rmsk exon 16791945 16792375 2645 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 16792376 16792752 2429 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 16792753 16792969 1332 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 16792971 16793631 4002 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 16793634 16794124 3215 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr2 rmsk exon 16794124 16794271 821 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 16794266 16797243 18775 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "27"; repStart "-4726"; chr2 rmsk exon 16797272 16797703 2653 - . gene_id "HERVH_2p24.2"; transcript_id "HERVH_2p24.2"; locus "HERVH_2p24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0112"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_2p24.2 ### chr2 rmsk gene 16847498 16850434 . + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0035"; model_cov "1011"; model_pct "18.3"; chr2 rmsk exon 16847498 16847575 1759 + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0035"; repClass "LTR"; repEnd "3842"; repFamily "ERVL"; repLeft "-1688"; repStart "3769"; chr2 rmsk exon 16847844 16848290 1759 + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0035"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "-1237"; repStart "3843"; chr2 rmsk exon 16848287 16848688 705 + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0035"; repClass "LTR"; repEnd "4671"; repFamily "ERVL"; repLeft "-859"; repStart "4427"; chr2 rmsk exon 16849660 16849976 963 + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0035"; repClass "LTR"; repEnd "5522"; repFamily "ERVL"; repLeft "-8"; repStart "5278"; chr2 rmsk exon 16849989 16850434 1223 + . gene_id "HERVL40_2p24.2"; transcript_id "HERVL40_2p24.2"; locus "HERVL40_2p24.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0035"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP2_2p24.2a ### chr2 rmsk gene 16900896 16902199 . + . gene_id "HUERSP2_2p24.2a"; transcript_id "HUERSP2_2p24.2a"; locus "HUERSP2_2p24.2a"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0015"; model_cov "452"; model_pct "14.6"; chr2 rmsk exon 16900896 16901344 2850 + . gene_id "HUERSP2_2p24.2a"; transcript_id "HUERSP2_2p24.2a"; locus "HUERSP2_2p24.2a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0015"; repClass "LTR"; repEnd "3083"; repFamily "ERV1"; repLeft "-5"; repStart "2631"; chr2 rmsk exon 16901350 16902199 5004 + . gene_id "HUERSP2_2p24.2a"; transcript_id "HUERSP2_2p24.2a"; locus "HUERSP2_2p24.2a"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0015"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_2p24.2b ### chr2 rmsk gene 16902202 16906295 . - . gene_id "HERVL_2p24.2b"; transcript_id "HERVL_2p24.2b"; locus "HERVL_2p24.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0127"; model_cov "3344"; model_pct "59.1"; chr2 rmsk exon 16902202 16902372 1260 - . gene_id "HERVL_2p24.2b"; transcript_id "HERVL_2p24.2b"; locus "HERVL_2p24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0127"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "3171"; repStart "-2313"; chr2 rmsk exon 16902507 16905274 23561 - . gene_id "HERVL_2p24.2b"; transcript_id "HERVL_2p24.2b"; locus "HERVL_2p24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0127"; repClass "LTR"; repEnd "3176"; repFamily "ERVL"; repLeft "412"; repStart "-2478"; chr2 rmsk exon 16905453 16905868 23561 - . gene_id "HERVL_2p24.2b"; transcript_id "HERVL_2p24.2b"; locus "HERVL_2p24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0127"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "-5243"; chr2 rmsk exon 16905869 16906295 3326 - . gene_id "HERVL_2p24.2b"; transcript_id "HERVL_2p24.2b"; locus "HERVL_2p24.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0127"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVL_2p24.2c ### chr2 rmsk gene 16912216 16916290 . + . gene_id "HERVL_2p24.2c"; transcript_id "HERVL_2p24.2c"; locus "HERVL_2p24.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0129"; model_cov "3846"; model_pct "68.0"; chr2 rmsk exon 16912216 16916025 29426 + . gene_id "HERVL_2p24.2c"; transcript_id "HERVL_2p24.2c"; locus "HERVL_2p24.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0129"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1808"; chr2 rmsk exon 16916026 16916139 778 + . gene_id "HERVL_2p24.2c"; transcript_id "HERVL_2p24.2c"; locus "HERVL_2p24.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0129"; repClass "LTR"; repEnd "108"; repFamily "ERVL"; repLeft "-336"; repStart "-8"; chr2 rmsk exon 16916140 16916290 973 + . gene_id "HERVL_2p24.2c"; transcript_id "HERVL_2p24.2c"; locus "HERVL_2p24.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0129"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "285"; ### ERVLE_2p24.2b ### chr2 rmsk gene 16975512 16976525 . + . gene_id "ERVLE_2p24.2b"; transcript_id "ERVLE_2p24.2b"; locus "ERVLE_2p24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0382"; model_cov "589"; model_pct "10.4"; chr2 rmsk exon 16975512 16975596 299 + . gene_id "ERVLE_2p24.2b"; transcript_id "ERVLE_2p24.2b"; locus "ERVLE_2p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0382"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-5287"; repStart "292"; chr2 rmsk exon 16975719 16975798 880 + . gene_id "ERVLE_2p24.2b"; transcript_id "ERVLE_2p24.2b"; locus "ERVLE_2p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0382"; repClass "LTR"; repEnd "616"; repFamily "ERVL"; repLeft "-5051"; repStart "537"; chr2 rmsk exon 16976115 16976525 880 + . gene_id "ERVLE_2p24.2b"; transcript_id "ERVLE_2p24.2b"; locus "ERVLE_2p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0382"; repClass "LTR"; repEnd "1039"; repFamily "ERVL"; repLeft "-4628"; repStart "617"; ### HERVW_2p24.2 ### chr2 rmsk gene 17338941 17346714 . + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0032"; model_cov "6347"; model_pct "73.6"; chr2 rmsk exon 17338941 17339690 5924 + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0032"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 17339691 17345622 46028 + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0032"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr2 rmsk exon 17345616 17345654 285 + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0032"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr2 rmsk exon 17345645 17345936 2285 + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0032"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 17345937 17346714 5936 + . gene_id "HERVW_2p24.2"; transcript_id "HERVW_2p24.2"; locus "HERVW_2p24.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0032"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_2p24.2b ### chr2 rmsk gene 17995216 17995793 . + . gene_id "HUERSP2_2p24.2b"; transcript_id "HUERSP2_2p24.2b"; locus "HUERSP2_2p24.2b"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0016"; model_cov "553"; model_pct "17.9"; chr2 rmsk exon 17995216 17995450 443 + . gene_id "HUERSP2_2p24.2b"; transcript_id "HUERSP2_2p24.2b"; locus "HUERSP2_2p24.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0016"; repClass "LTR"; repEnd "-3749"; repFamily "ERV1"; repLeft "-6837"; repStart "-4001"; chr2 rmsk exon 17995487 17995793 611 + . gene_id "HUERSP2_2p24.2b"; transcript_id "HUERSP2_2p24.2b"; locus "HUERSP2_2p24.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0016"; repClass "LTR"; repEnd "568"; repFamily "ERV1"; repLeft "-2520"; repStart "267"; ### MER61_2p24.2 ### chr2 rmsk gene 17998086 18002368 . + . gene_id "MER61_2p24.2"; transcript_id "MER61_2p24.2"; locus "MER61_2p24.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0045"; model_cov "3670"; model_pct "70.3"; chr2 rmsk exon 17998086 17998871 4283 + . gene_id "MER61_2p24.2"; transcript_id "MER61_2p24.2"; locus "MER61_2p24.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0045"; repClass "LTR"; repEnd "2137"; repFamily "ERV1"; repLeft "-3080"; repStart "1346"; chr2 rmsk exon 18000001 18001922 10367 + . gene_id "MER61_2p24.2"; transcript_id "MER61_2p24.2"; locus "MER61_2p24.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0045"; repClass "LTR"; repEnd "5203"; repFamily "ERV1"; repLeft "-14"; repStart "2324"; chr2 rmsk exon 18001959 18002368 1842 + . gene_id "MER61_2p24.2"; transcript_id "MER61_2p24.2"; locus "MER61_2p24.2"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0045"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "14"; ### HERVP71A_2p24.2 ### chr2 rmsk gene 18082802 18089476 . - . gene_id "HERVP71A_2p24.2"; transcript_id "HERVP71A_2p24.2"; locus "HERVP71A_2p24.2"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0011"; model_cov "5791"; model_pct "76.3"; chr2 rmsk exon 18082802 18085979 17751 - . gene_id "HERVP71A_2p24.2"; transcript_id "HERVP71A_2p24.2"; locus "HERVP71A_2p24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0011"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "4382"; repStart "0"; chr2 rmsk exon 18086309 18086434 17751 - . gene_id "HERVP71A_2p24.2"; transcript_id "HERVP71A_2p24.2"; locus "HERVP71A_2p24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0011"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "4259"; repStart "-3209"; chr2 rmsk exon 18086435 18088883 15784 - . gene_id "HERVP71A_2p24.2"; transcript_id "HERVP71A_2p24.2"; locus "HERVP71A_2p24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0011"; repClass "LTR"; repEnd "2463"; repFamily "ERV1"; repLeft "2"; repStart "-5127"; chr2 rmsk exon 18088884 18089476 4369 - . gene_id "HERVP71A_2p24.2"; transcript_id "HERVP71A_2p24.2"; locus "HERVP71A_2p24.2"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0011"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_2p24.2d ### chr2 rmsk gene 18878252 18882590 . + . gene_id "HERVL_2p24.2d"; transcript_id "HERVL_2p24.2d"; locus "HERVL_2p24.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0130"; model_cov "3867"; model_pct "68.4"; chr2 rmsk exon 18878252 18879175 6759 + . gene_id "HERVL_2p24.2d"; transcript_id "HERVL_2p24.2d"; locus "HERVL_2p24.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0130"; repClass "LTR"; repEnd "1341"; repFamily "ERVL"; repLeft "-4313"; repStart "424"; chr2 rmsk exon 18879174 18882065 19736 + . gene_id "HERVL_2p24.2d"; transcript_id "HERVL_2p24.2d"; locus "HERVL_2p24.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0130"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2704"; chr2 rmsk exon 18882066 18882467 2559 + . gene_id "HERVL_2p24.2d"; transcript_id "HERVL_2p24.2d"; locus "HERVL_2p24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0130"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr2 rmsk exon 18882556 18882590 2559 + . gene_id "HERVL_2p24.2d"; transcript_id "HERVL_2p24.2d"; locus "HERVL_2p24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0130"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "406"; ### ERVLE_2p24.1a ### chr2 rmsk gene 19814422 19815880 . - . gene_id "ERVLE_2p24.1a"; transcript_id "ERVLE_2p24.1a"; locus "ERVLE_2p24.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0384"; model_cov "1255"; model_pct "22.1"; chr2 rmsk exon 19814422 19815219 1810 - . gene_id "ERVLE_2p24.1a"; transcript_id "ERVLE_2p24.1a"; locus "ERVLE_2p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0384"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "723"; repStart "-4081"; chr2 rmsk exon 19815499 19815880 701 - . gene_id "ERVLE_2p24.1a"; transcript_id "ERVLE_2p24.1a"; locus "ERVLE_2p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0384"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "5"; repStart "-5270"; ### HML3_2p24.1 ### chr2 rmsk gene 19922747 19928511 . + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0023"; model_cov "4464"; model_pct "74.1"; chr2 rmsk exon 19922747 19923259 4228 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 19923260 19924282 22634 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "1037"; repFamily "ERVK"; repLeft "-4984"; repStart "1"; chr2 rmsk exon 19924574 19926328 22634 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1038"; chr2 rmsk exon 19926329 19926559 1853 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr2 rmsk exon 19926547 19927997 11362 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4583"; chr2 rmsk exon 19927998 19928511 4232 + . gene_id "HML3_2p24.1"; transcript_id "HML3_2p24.1"; locus "HML3_2p24.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0023"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_2p24.1 ### chr2 rmsk gene 20082562 20088123 . + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0113"; model_cov "5034"; model_pct "65.3"; chr2 rmsk exon 20082562 20082996 2600 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 20083019 20085730 14980 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "4"; chr2 rmsk exon 20085710 20086306 4215 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3140"; chr2 rmsk exon 20086300 20087302 6600 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "4992"; repFamily "ERV1"; repLeft "-2721"; repStart "3962"; chr2 rmsk exon 20087282 20087691 2810 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7296"; chr2 rmsk exon 20087692 20088123 2599 + . gene_id "HERVH_2p24.1"; transcript_id "HERVH_2p24.1"; locus "HERVH_2p24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0113"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_2p24.1b ### chr2 rmsk gene 21135294 21135998 . - . gene_id "ERVLE_2p24.1b"; transcript_id "ERVLE_2p24.1b"; locus "ERVLE_2p24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0385"; model_cov "726"; model_pct "12.8"; chr2 rmsk exon 21135294 21135998 1582 - . gene_id "ERVLE_2p24.1b"; transcript_id "ERVLE_2p24.1b"; locus "ERVLE_2p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0385"; repClass "LTR"; repEnd "4080"; repFamily "ERVL"; repLeft "3354"; repStart "-1587"; ### ERVLE_2p24.1c ### chr2 rmsk gene 21159758 21160817 . - . gene_id "ERVLE_2p24.1c"; transcript_id "ERVLE_2p24.1c"; locus "ERVLE_2p24.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0386"; model_cov "926"; model_pct "16.3"; chr2 rmsk exon 21159758 21160369 792 - . gene_id "ERVLE_2p24.1c"; transcript_id "ERVLE_2p24.1c"; locus "ERVLE_2p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0386"; repClass "LTR"; repEnd "5090"; repFamily "ERVL"; repLeft "4301"; repStart "-577"; chr2 rmsk exon 21160671 21160817 709 - . gene_id "ERVLE_2p24.1c"; transcript_id "ERVLE_2p24.1c"; locus "ERVLE_2p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0386"; repClass "LTR"; repEnd "4741"; repFamily "ERVL"; repLeft "4604"; repStart "-926"; ### ERVLE_2p24.1d ### chr2 rmsk gene 21180498 21184746 . - . gene_id "ERVLE_2p24.1d"; transcript_id "ERVLE_2p24.1d"; locus "ERVLE_2p24.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0387"; model_cov "3811"; model_pct "67.2"; chr2 rmsk exon 21180498 21182106 3436 - . gene_id "ERVLE_2p24.1d"; transcript_id "ERVLE_2p24.1d"; locus "ERVLE_2p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0387"; repClass "LTR"; repEnd "5448"; repFamily "ERVL"; repLeft "3800"; repStart "-219"; chr2 rmsk exon 21182195 21182279 370 - . gene_id "ERVLE_2p24.1d"; transcript_id "ERVLE_2p24.1d"; locus "ERVLE_2p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0387"; repClass "LTR"; repEnd "3569"; repFamily "ERVL"; repLeft "3485"; repStart "-2098"; chr2 rmsk exon 21182290 21183071 1213 - . gene_id "ERVLE_2p24.1d"; transcript_id "ERVLE_2p24.1d"; locus "ERVLE_2p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0387"; repClass "LTR"; repEnd "3010"; repFamily "ERVL"; repLeft "2183"; repStart "-2657"; chr2 rmsk exon 21183544 21184746 2012 - . gene_id "ERVLE_2p24.1d"; transcript_id "ERVLE_2p24.1d"; locus "ERVLE_2p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0387"; repClass "LTR"; repEnd "1736"; repFamily "ERVL"; repLeft "484"; repStart "-3931"; ### ERVLB4_2p24.1a ### chr2 rmsk gene 21307175 21308614 . + . gene_id "ERVLB4_2p24.1a"; transcript_id "ERVLB4_2p24.1a"; locus "ERVLB4_2p24.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0148"; model_cov "1399"; model_pct "24.5"; chr2 rmsk exon 21307175 21307641 684 + . gene_id "ERVLB4_2p24.1a"; transcript_id "ERVLB4_2p24.1a"; locus "ERVLB4_2p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0148"; repClass "LTR"; repEnd "965"; repFamily "ERVL"; repLeft "-4749"; repStart "490"; chr2 rmsk exon 21307670 21308614 1253 + . gene_id "ERVLB4_2p24.1a"; transcript_id "ERVLB4_2p24.1a"; locus "ERVLB4_2p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0148"; repClass "LTR"; repEnd "3402"; repFamily "ERVL"; repLeft "-2312"; repStart "2478"; ### ERVLB4_2p24.1b ### chr2 rmsk gene 21311667 21313374 . + . gene_id "ERVLB4_2p24.1b"; transcript_id "ERVLB4_2p24.1b"; locus "ERVLB4_2p24.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0149"; model_cov "1698"; model_pct "29.7"; chr2 rmsk exon 21311667 21313374 2891 + . gene_id "ERVLB4_2p24.1b"; transcript_id "ERVLB4_2p24.1b"; locus "ERVLB4_2p24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0149"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "-1266"; repStart "2750"; ### ERVLE_2p24.1e ### chr2 rmsk gene 21358692 21360294 . - . gene_id "ERVLE_2p24.1e"; transcript_id "ERVLE_2p24.1e"; locus "ERVLE_2p24.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0388"; model_cov "1035"; model_pct "18.3"; chr2 rmsk exon 21358692 21359303 2061 - . gene_id "ERVLE_2p24.1e"; transcript_id "ERVLE_2p24.1e"; locus "ERVLE_2p24.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0388"; repClass "LTR"; repEnd "657"; repFamily "ERVL"; repLeft "16"; repStart "-6"; chr2 rmsk exon 21359304 21360294 3841 - . gene_id "ERVLE_2p24.1e"; transcript_id "ERVLE_2p24.1e"; locus "ERVLE_2p24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0388"; repClass "LTR"; repEnd "5635"; repFamily "ERVL"; repLeft "4600"; repStart "-32"; ### ERV316A3_2p24.1a ### chr2 rmsk gene 21396567 21398547 . + . gene_id "ERV316A3_2p24.1a"; transcript_id "ERV316A3_2p24.1a"; locus "ERV316A3_2p24.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0224"; model_cov "1366"; model_pct "26.1"; chr2 rmsk exon 21396567 21396762 429 + . gene_id "ERV316A3_2p24.1a"; transcript_id "ERV316A3_2p24.1a"; locus "ERV316A3_2p24.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0224"; repClass "LTR"; repEnd "195"; repFamily "ERVL"; repLeft "-243"; repStart "1"; chr2 rmsk exon 21396846 21397430 1395 + . gene_id "ERV316A3_2p24.1a"; transcript_id "ERV316A3_2p24.1a"; locus "ERV316A3_2p24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0224"; repClass "LTR"; repEnd "1463"; repFamily "ERVL"; repLeft "-3763"; repStart "852"; chr2 rmsk exon 21397434 21398147 2193 + . gene_id "ERV316A3_2p24.1a"; transcript_id "ERV316A3_2p24.1a"; locus "ERV316A3_2p24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0224"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "-6"; repStart "4465"; chr2 rmsk exon 21398218 21398547 826 + . gene_id "ERV316A3_2p24.1a"; transcript_id "ERV316A3_2p24.1a"; locus "ERV316A3_2p24.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0224"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "87"; ### MER101_2p24.1 ### chr2 rmsk gene 21506174 21513224 . + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; category "prototype"; intModel "MER101-int"; locid "MER101-int_0046"; model_cov "5400"; model_pct "81.3"; chr2 rmsk exon 21506174 21506568 1910 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0046"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "44"; chr2 rmsk exon 21506592 21507366 1703 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "-5816"; repStart "-90"; chr2 rmsk exon 21507800 21508509 2140 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "2023"; repFamily "ERV1"; repLeft "-4616"; repStart "1137"; chr2 rmsk exon 21508572 21509204 1597 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "2648"; repFamily "ERV1"; repLeft "-3991"; repStart "1720"; chr2 rmsk exon 21509316 21509394 406 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "-3877"; repStart "2683"; chr2 rmsk exon 21509527 21509722 4283 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3693"; repStart "2761"; chr2 rmsk exon 21510045 21512174 4283 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "2833"; chr2 rmsk exon 21512173 21512782 1780 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0046"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "5999"; chr2 rmsk exon 21512783 21513224 2254 + . gene_id "MER101_2p24.1"; transcript_id "MER101_2p24.1"; locus "MER101_2p24.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0046"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2p24.1f ### chr2 rmsk gene 21674936 21677416 . - . gene_id "ERVLE_2p24.1f"; transcript_id "ERVLE_2p24.1f"; locus "ERVLE_2p24.1f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0389"; model_cov "1047"; model_pct "18.5"; chr2 rmsk exon 21674936 21675577 2007 - . gene_id "ERVLE_2p24.1f"; transcript_id "ERVLE_2p24.1f"; locus "ERVLE_2p24.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0389"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 21675578 21675852 910 - . gene_id "ERVLE_2p24.1f"; transcript_id "ERVLE_2p24.1f"; locus "ERVLE_2p24.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0389"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5397"; repStart "0"; chr2 rmsk exon 21676674 21677416 2287 - . gene_id "ERVLE_2p24.1f"; transcript_id "ERVLE_2p24.1f"; locus "ERVLE_2p24.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0389"; repClass "LTR"; repEnd "5365"; repFamily "ERVL"; repLeft "4588"; repStart "-302"; ### ERVLE_2p24.1g ### chr2 rmsk gene 21684149 21687266 . - . gene_id "ERVLE_2p24.1g"; transcript_id "ERVLE_2p24.1g"; locus "ERVLE_2p24.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0390"; model_cov "3011"; model_pct "53.1"; chr2 rmsk exon 21684149 21684399 971 - . gene_id "ERVLE_2p24.1g"; transcript_id "ERVLE_2p24.1g"; locus "ERVLE_2p24.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0390"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "4271"; repStart "-1129"; chr2 rmsk exon 21684391 21685078 3452 - . gene_id "ERVLE_2p24.1g"; transcript_id "ERVLE_2p24.1g"; locus "ERVLE_2p24.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0390"; repClass "LTR"; repEnd "3428"; repFamily "ERVL"; repLeft "2718"; repStart "-2239"; chr2 rmsk exon 21685360 21687266 5920 - . gene_id "ERVLE_2p24.1g"; transcript_id "ERVLE_2p24.1g"; locus "ERVLE_2p24.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0390"; repClass "LTR"; repEnd "2663"; repFamily "ERVL"; repLeft "629"; repStart "-3004"; ### HERVFRD_2p24.1 ### chr2 rmsk gene 22122387 22127052 . + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0022"; model_cov "2887"; model_pct "40.1"; chr2 rmsk exon 22122387 22123083 3949 + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0022"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "-30"; repStart "1"; chr2 rmsk exon 22123133 22124835 5888 + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0022"; repClass "LTR"; repEnd "1854"; repFamily "ERV1"; repLeft "-5351"; repStart "1"; chr2 rmsk exon 22124825 22125887 3095 + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0022"; repClass "LTR"; repEnd "6393"; repFamily "ERV1"; repLeft "-812"; repStart "5716"; chr2 rmsk exon 22125888 22126321 2362 + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0022"; repClass "LTR"; repEnd "7181"; repFamily "ERV1"; repLeft "-24"; repStart "6824"; chr2 rmsk exon 22126338 22127052 4028 + . gene_id "HERVFRD_2p24.1"; transcript_id "HERVFRD_2p24.1"; locus "HERVFRD_2p24.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0022"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_2p24.1b ### chr2 rmsk gene 22202082 22203195 . + . gene_id "ERV316A3_2p24.1b"; transcript_id "ERV316A3_2p24.1b"; locus "ERV316A3_2p24.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0225"; model_cov "1038"; model_pct "19.9"; chr2 rmsk exon 22202082 22202712 1083 + . gene_id "ERV316A3_2p24.1b"; transcript_id "ERV316A3_2p24.1b"; locus "ERV316A3_2p24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0225"; repClass "LTR"; repEnd "2062"; repFamily "ERVL"; repLeft "-3164"; repStart "1331"; chr2 rmsk exon 22202903 22203195 515 + . gene_id "ERV316A3_2p24.1b"; transcript_id "ERV316A3_2p24.1b"; locus "ERV316A3_2p24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0225"; repClass "LTR"; repEnd "2505"; repFamily "ERVL"; repLeft "-2721"; repStart "2198"; ### ERV316A3_2p24.1c ### chr2 rmsk gene 22206096 22209338 . + . gene_id "ERV316A3_2p24.1c"; transcript_id "ERV316A3_2p24.1c"; locus "ERV316A3_2p24.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0226"; model_cov "3114"; model_pct "59.6"; chr2 rmsk exon 22206096 22209174 4529 + . gene_id "ERV316A3_2p24.1c"; transcript_id "ERV316A3_2p24.1c"; locus "ERV316A3_2p24.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0226"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "2111"; chr2 rmsk exon 22209176 22209338 451 + . gene_id "ERV316A3_2p24.1c"; transcript_id "ERV316A3_2p24.1c"; locus "ERV316A3_2p24.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0226"; repClass "LTR"; repEnd "164"; repFamily "ERVL"; repLeft "-298"; repStart "0"; ### ERVL_2p24.1 ### chr2 rmsk gene 22719948 22723461 . + . gene_id "ERVL_2p24.1"; transcript_id "ERVL_2p24.1"; locus "ERVL_2p24.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0032"; model_cov "704"; model_pct "12.2"; chr2 rmsk exon 22719948 22720217 846 + . gene_id "ERVL_2p24.1"; transcript_id "ERVL_2p24.1"; locus "ERVL_2p24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0032"; repClass "LTR"; repEnd "4782"; repFamily "ERVL"; repLeft "-975"; repStart "4479"; chr2 rmsk exon 22722553 22722817 560 + . gene_id "ERVL_2p24.1"; transcript_id "ERVL_2p24.1"; locus "ERVL_2p24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0032"; repClass "LTR"; repEnd "5071"; repFamily "ERVL"; repLeft "-686"; repStart "4792"; chr2 rmsk exon 22723342 22723461 252 + . gene_id "ERVL_2p24.1"; transcript_id "ERVL_2p24.1"; locus "ERVL_2p24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0032"; repClass "LTR"; repEnd "5290"; repFamily "ERVL"; repLeft "-467"; repStart "5168"; ### ERV316A3_2p24.1d ### chr2 rmsk gene 23311872 23313218 . + . gene_id "ERV316A3_2p24.1d"; transcript_id "ERV316A3_2p24.1d"; locus "ERV316A3_2p24.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0227"; model_cov "674"; model_pct "12.9"; chr2 rmsk exon 23311872 23311949 320 + . gene_id "ERV316A3_2p24.1d"; transcript_id "ERV316A3_2p24.1d"; locus "ERV316A3_2p24.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0227"; repClass "LTR"; repEnd "81"; repFamily "ERVL"; repLeft "-357"; repStart "1"; chr2 rmsk exon 23312373 23312570 618 + . gene_id "ERV316A3_2p24.1d"; transcript_id "ERV316A3_2p24.1d"; locus "ERV316A3_2p24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0227"; repClass "LTR"; repEnd "2863"; repFamily "ERVL"; repLeft "-2363"; repStart "2667"; chr2 rmsk exon 23312861 23313218 703 + . gene_id "ERV316A3_2p24.1d"; transcript_id "ERV316A3_2p24.1d"; locus "ERV316A3_2p24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0227"; repClass "LTR"; repEnd "3220"; repFamily "ERVL"; repLeft "-2006"; repStart "2742"; ### HERVL40_2p23.3a ### chr2 rmsk gene 24114227 24115332 . - . gene_id "HERVL40_2p23.3a"; transcript_id "HERVL40_2p23.3a"; locus "HERVL40_2p23.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0036"; model_cov "831"; model_pct "15.0"; chr2 rmsk exon 24114227 24115037 2763 - . gene_id "HERVL40_2p23.3a"; transcript_id "HERVL40_2p23.3a"; locus "HERVL40_2p23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0036"; repClass "LTR"; repEnd "4682"; repFamily "ERVL"; repLeft "3851"; repStart "-848"; chr2 rmsk exon 24115043 24115332 1314 - . gene_id "HERVL40_2p23.3a"; transcript_id "HERVL40_2p23.3a"; locus "HERVL40_2p23.3a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0036"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "1"; repStart "-169"; ### HERVL40_2p23.3b ### chr2 rmsk gene 24316835 24321156 . + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0037"; model_cov "1924"; model_pct "34.8"; chr2 rmsk exon 24316835 24317098 1078 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "2927"; repFamily "ERVL"; repLeft "-2603"; repStart "2570"; chr2 rmsk exon 24317401 24317570 1078 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "3134"; repFamily "ERVL"; repLeft "-2396"; repStart "2928"; chr2 rmsk exon 24317589 24317769 733 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "-2118"; repStart "3226"; chr2 rmsk exon 24317781 24317943 478 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "-1808"; repStart "3537"; chr2 rmsk exon 24318090 24318145 536 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "3803"; repFamily "ERVL"; repLeft "-1727"; repStart "3748"; chr2 rmsk exon 24318407 24318794 1172 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "4269"; repFamily "ERVL"; repLeft "-1261"; repStart "3804"; chr2 rmsk exon 24319137 24319169 1172 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1240"; repStart "4270"; chr2 rmsk exon 24319220 24319360 321 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "4511"; chr2 rmsk exon 24319911 24319968 380 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "-248"; repStart "5225"; chr2 rmsk exon 24320735 24321038 883 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "5522"; repFamily "ERVL"; repLeft "-8"; repStart "5278"; chr2 rmsk exon 24321049 24321156 485 + . gene_id "HERVL40_2p23.3b"; transcript_id "HERVL40_2p23.3b"; locus "HERVL40_2p23.3b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0037"; repClass "LTR"; repEnd "112"; repFamily "ERVL"; repLeft "-407"; repStart "3"; ### HERVL_2p23.3 ### chr2 rmsk gene 24988054 24990691 . + . gene_id "HERVL_2p23.3"; transcript_id "HERVL_2p23.3"; locus "HERVL_2p23.3"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0132"; model_cov "2628"; model_pct "46.5"; chr2 rmsk exon 24988054 24990691 19702 + . gene_id "HERVL_2p23.3"; transcript_id "HERVL_2p23.3"; locus "HERVL_2p23.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0132"; repClass "LTR"; repEnd "5325"; repFamily "ERVL"; repLeft "-329"; repStart "2697"; ### ERVLB4_2p23.3 ### chr2 rmsk gene 25025385 25030324 . + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0151"; model_cov "2506"; model_pct "43.9"; chr2 rmsk exon 25025385 25025583 253 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "-5146"; repStart "358"; chr2 rmsk exon 25025756 25025919 397 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "944"; repFamily "ERVL"; repLeft "-4770"; repStart "780"; chr2 rmsk exon 25025956 25026255 397 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "1265"; repFamily "ERVL"; repLeft "-4449"; repStart "945"; chr2 rmsk exon 25026299 25026544 514 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "-4128"; repStart "1336"; chr2 rmsk exon 25026934 25027212 338 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "-3293"; repStart "2112"; chr2 rmsk exon 25027219 25027602 748 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "2818"; repFamily "ERVL"; repLeft "-2896"; repStart "2433"; chr2 rmsk exon 25027897 25028025 748 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "-2770"; repStart "2819"; chr2 rmsk exon 25028984 25029441 1112 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "-2281"; repStart "2966"; chr2 rmsk exon 25029606 25029783 490 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "3867"; repFamily "ERVL"; repLeft "-1847"; repStart "3686"; chr2 rmsk exon 25030235 25030324 252 + . gene_id "ERVLB4_2p23.3"; transcript_id "ERVLB4_2p23.3"; locus "ERVLB4_2p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0151"; repClass "LTR"; repEnd "4107"; repFamily "ERVL"; repLeft "-1607"; repStart "4012"; ### ERVLE_2p23.3a ### chr2 rmsk gene 25325538 25326295 . + . gene_id "ERVLE_2p23.3a"; transcript_id "ERVLE_2p23.3a"; locus "ERVLE_2p23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0393"; model_cov "718"; model_pct "12.7"; chr2 rmsk exon 25325538 25326108 1357 + . gene_id "ERVLE_2p23.3a"; transcript_id "ERVLE_2p23.3a"; locus "ERVLE_2p23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0393"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "-352"; repStart "4750"; chr2 rmsk exon 25326159 25326295 1357 + . gene_id "ERVLE_2p23.3a"; transcript_id "ERVLE_2p23.3a"; locus "ERVLE_2p23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0393"; repClass "LTR"; repEnd "5469"; repFamily "ERVL"; repLeft "-198"; repStart "5316"; ### ERV316A3_2p23.3a ### chr2 rmsk gene 25883138 25889177 . + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0229"; model_cov "2345"; model_pct "44.9"; chr2 rmsk exon 25883138 25883527 1372 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-10"; repStart "1"; chr2 rmsk exon 25883533 25883640 361 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "1968"; repFamily "ERVL"; repLeft "-3258"; repStart "1851"; chr2 rmsk exon 25883646 25883848 499 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "2686"; repFamily "ERVL"; repLeft "-2540"; repStart "2379"; chr2 rmsk exon 25883862 25884234 1077 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "3471"; repFamily "ERVL"; repLeft "-1755"; repStart "3093"; chr2 rmsk exon 25885128 25885487 2858 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "-1415"; repStart "3468"; chr2 rmsk exon 25886073 25886569 2858 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "4286"; repFamily "ERVL"; repLeft "-940"; repStart "3812"; chr2 rmsk exon 25887526 25887820 2098 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "-436"; repStart "4454"; chr2 rmsk exon 25888132 25888290 2098 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "4923"; repFamily "ERVL"; repLeft "-303"; repStart "4791"; chr2 rmsk exon 25888535 25888792 1959 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "-44"; repStart "4924"; chr2 rmsk exon 25888851 25889177 1313 + . gene_id "ERV316A3_2p23.3a"; transcript_id "ERV316A3_2p23.3a"; locus "ERV316A3_2p23.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0229"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-43"; repStart "33"; ### ERVLE_2p23.3b ### chr2 rmsk gene 26219492 26224762 . + . gene_id "ERVLE_2p23.3b"; transcript_id "ERVLE_2p23.3b"; locus "ERVLE_2p23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0395"; model_cov "4141"; model_pct "73.1"; chr2 rmsk exon 26219492 26221988 13441 + . gene_id "ERVLE_2p23.3b"; transcript_id "ERVLE_2p23.3b"; locus "ERVLE_2p23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0395"; repClass "LTR"; repEnd "3849"; repFamily "ERVL"; repLeft "-1818"; repStart "1236"; chr2 rmsk exon 26222381 26222644 4980 + . gene_id "ERVLE_2p23.3b"; transcript_id "ERVLE_2p23.3b"; locus "ERVLE_2p23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0395"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "-1534"; repStart "3858"; chr2 rmsk exon 26222663 26223513 4455 + . gene_id "ERVLE_2p23.3b"; transcript_id "ERVLE_2p23.3b"; locus "ERVLE_2p23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0395"; repClass "LTR"; repEnd "5229"; repFamily "ERVL"; repLeft "-438"; repStart "4369"; chr2 rmsk exon 26224415 26224762 1522 + . gene_id "ERVLE_2p23.3b"; transcript_id "ERVLE_2p23.3b"; locus "ERVLE_2p23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0395"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "5272"; ### HML5_2p23.3 ### chr2 rmsk gene 26256938 26259651 . - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0015"; model_cov "807"; model_pct "11.8"; chr2 rmsk exon 26256938 26257110 4752 - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0015"; repClass "LTR"; repEnd "811"; repFamily "ERVK"; repLeft "650"; repStart "-6026"; chr2 rmsk exon 26257420 26257737 4752 - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0015"; repClass "LTR"; repEnd "649"; repFamily "ERVK"; repLeft "338"; repStart "-6188"; chr2 rmsk exon 26258029 26258218 4752 - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0015"; repClass "LTR"; repEnd "337"; repFamily "ERVK"; repLeft "167"; repStart "-6500"; chr2 rmsk exon 26259005 26259198 4752 - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0015"; repClass "LTR"; repEnd "166"; repFamily "ERVK"; repLeft "1"; repStart "-6671"; chr2 rmsk exon 26259199 26259651 3475 - . gene_id "HML5_2p23.3"; transcript_id "HML5_2p23.3"; locus "HML5_2p23.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0015"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_2p23.3b ### chr2 rmsk gene 26402437 26405320 . - . gene_id "ERV316A3_2p23.3b"; transcript_id "ERV316A3_2p23.3b"; locus "ERV316A3_2p23.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0230"; model_cov "1578"; model_pct "30.2"; chr2 rmsk exon 26402437 26402880 1834 - . gene_id "ERV316A3_2p23.3b"; transcript_id "ERV316A3_2p23.3b"; locus "ERV316A3_2p23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0230"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "2553"; repStart "-2204"; chr2 rmsk exon 26404200 26405320 2981 - . gene_id "ERV316A3_2p23.3b"; transcript_id "ERV316A3_2p23.3b"; locus "ERV316A3_2p23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0230"; repClass "LTR"; repEnd "2558"; repFamily "ERVL"; repLeft "1449"; repStart "-2668"; ### MER4B_2p23.1 ### chr2 rmsk gene 30162231 30163174 . + . gene_id "MER4B_2p23.1"; transcript_id "MER4B_2p23.1"; locus "MER4B_2p23.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0051"; model_cov "979"; model_pct "14.5"; chr2 rmsk exon 30162231 30163174 5191 + . gene_id "MER4B_2p23.1"; transcript_id "MER4B_2p23.1"; locus "MER4B_2p23.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0051"; repClass "LTR"; repEnd "4058"; repFamily "ERV1"; repLeft "-2700"; repStart "3079"; ### HERVIP10FH_2p23.1 ### chr2 rmsk gene 30516724 30518550 . + . gene_id "HERVIP10FH_2p23.1"; transcript_id "HERVIP10FH_2p23.1"; locus "HERVIP10FH_2p23.1"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0018"; model_cov "1580"; model_pct "31.0"; chr2 rmsk exon 30516724 30517421 4964 + . gene_id "HERVIP10FH_2p23.1"; transcript_id "HERVIP10FH_2p23.1"; locus "HERVIP10FH_2p23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0018"; repClass "LTR"; repEnd "-2817"; repFamily "ERV1"; repLeft "-7919"; repStart "-3508"; chr2 rmsk exon 30517701 30518550 5994 + . gene_id "HERVIP10FH_2p23.1"; transcript_id "HERVIP10FH_2p23.1"; locus "HERVIP10FH_2p23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0018"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-3319"; repStart "894"; ### HERVW_2p23.1a ### chr2 rmsk gene 30518533 30520264 . + . gene_id "HERVW_2p23.1a"; transcript_id "HERVW_2p23.1a"; locus "HERVW_2p23.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0033"; model_cov "1004"; model_pct "11.6"; chr2 rmsk exon 30518533 30519160 5142 + . gene_id "HERVW_2p23.1a"; transcript_id "HERVW_2p23.1a"; locus "HERVW_2p23.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0033"; repClass "LTR"; repEnd "4578"; repFamily "ERV1"; repLeft "-4048"; repStart "3940"; chr2 rmsk exon 30519144 30519219 596 + . gene_id "HERVW_2p23.1a"; transcript_id "HERVW_2p23.1a"; locus "HERVW_2p23.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0033"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7473"; chr2 rmsk exon 30519210 30519501 2461 + . gene_id "HERVW_2p23.1a"; transcript_id "HERVW_2p23.1a"; locus "HERVW_2p23.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0033"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 30519502 30520264 4893 + . gene_id "HERVW_2p23.1a"; transcript_id "HERVW_2p23.1a"; locus "HERVW_2p23.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0033"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2p23.1a ### chr2 rmsk gene 31469813 31471466 . - . gene_id "ERVLE_2p23.1a"; transcript_id "ERVLE_2p23.1a"; locus "ERVLE_2p23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0398"; model_cov "1246"; model_pct "22.0"; chr2 rmsk exon 31469813 31470775 1807 - . gene_id "ERVLE_2p23.1a"; transcript_id "ERVLE_2p23.1a"; locus "ERVLE_2p23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0398"; repClass "LTR"; repEnd "2395"; repFamily "ERVL"; repLeft "1400"; repStart "-3272"; chr2 rmsk exon 31471218 31471466 757 - . gene_id "ERVLE_2p23.1a"; transcript_id "ERVLE_2p23.1a"; locus "ERVLE_2p23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0398"; repClass "LTR"; repEnd "1213"; repFamily "ERVL"; repLeft "962"; repStart "-4454"; ### HERVW_2p23.1b ### chr2 rmsk gene 31629154 31634158 . + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0034"; model_cov "5868"; model_pct "68.0"; chr2 rmsk exon 31629154 31629378 1601 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "534"; chr2 rmsk exon 31629379 31630097 5624 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-7919"; repStart "1"; chr2 rmsk exon 31630251 31631536 9544 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "732"; chr2 rmsk exon 31631522 31633437 10766 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2430"; chr2 rmsk exon 31633456 31633746 2342 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 31633751 31633901 2336 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-634"; repStart "5"; chr2 rmsk exon 31633954 31634158 2336 + . gene_id "HERVW_2p23.1b"; transcript_id "HERVW_2p23.1b"; locus "HERVW_2p23.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0034"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "147"; ### HERVL40_2p23.1 ### chr2 rmsk gene 31660855 31661594 . - . gene_id "HERVL40_2p23.1"; transcript_id "HERVL40_2p23.1"; locus "HERVL40_2p23.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0038"; model_cov "560"; model_pct "10.1"; chr2 rmsk exon 31660855 31661024 735 - . gene_id "HERVL40_2p23.1"; transcript_id "HERVL40_2p23.1"; locus "HERVL40_2p23.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0038"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "3216"; repStart "-2142"; chr2 rmsk exon 31660998 31661380 1465 - . gene_id "HERVL40_2p23.1"; transcript_id "HERVL40_2p23.1"; locus "HERVL40_2p23.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0038"; repClass "LTR"; repEnd "3081"; repFamily "ERVL"; repLeft "2693"; repStart "-2449"; chr2 rmsk exon 31661381 31661594 993 - . gene_id "HERVL40_2p23.1"; transcript_id "HERVL40_2p23.1"; locus "HERVL40_2p23.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0038"; repClass "LTR"; repEnd "226"; repFamily "ERVL"; repLeft "7"; repStart "-293"; ### HUERSP3_2p23.1 ### chr2 rmsk gene 31687476 31695509 . - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0020"; model_cov "6413"; model_pct "71.9"; chr2 rmsk exon 31687476 31688147 4002 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 31688150 31688410 1484 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr2 rmsk exon 31688627 31690394 13445 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "5163"; repStart "-2007"; chr2 rmsk exon 31690697 31691011 13445 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "5162"; repFamily "ERV1"; repLeft "4849"; repStart "-3757"; chr2 rmsk exon 31690995 31694869 18636 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "4606"; repFamily "ERV1"; repLeft "473"; repStart "-4313"; chr2 rmsk exon 31694884 31695509 2985 - . gene_id "HUERSP3_2p23.1"; transcript_id "HUERSP3_2p23.1"; locus "HUERSP3_2p23.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0020"; repClass "LTR"; repEnd "674"; repFamily "ERV1"; repLeft "84"; repStart "-54"; ### ERVLE_2p23.1b ### chr2 rmsk gene 31744149 31747416 . - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0400"; model_cov "1454"; model_pct "25.7"; chr2 rmsk exon 31744149 31744645 1183 - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0400"; repClass "LTR"; repEnd "2966"; repFamily "ERVL"; repLeft "2438"; repStart "-2701"; chr2 rmsk exon 31744681 31744838 1325 - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0400"; repClass "LTR"; repEnd "2164"; repFamily "ERVL"; repLeft "2007"; repStart "-3503"; chr2 rmsk exon 31745482 31745873 1325 - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0400"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "1581"; repStart "-3661"; chr2 rmsk exon 31746260 31746416 276 - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0400"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "404"; repStart "-5101"; chr2 rmsk exon 31747241 31747416 525 - . gene_id "ERVLE_2p23.1b"; transcript_id "ERVLE_2p23.1b"; locus "ERVLE_2p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0400"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "50"; repStart "-5435"; ### ERVLE_2p22.3a ### chr2 rmsk gene 32383399 32387396 . - . gene_id "ERVLE_2p22.3a"; transcript_id "ERVLE_2p22.3a"; locus "ERVLE_2p22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0401"; model_cov "3546"; model_pct "62.6"; chr2 rmsk exon 32383399 32383534 1244 - . gene_id "ERVLE_2p22.3a"; transcript_id "ERVLE_2p22.3a"; locus "ERVLE_2p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0401"; repClass "LTR"; repEnd "5227"; repFamily "ERVL"; repLeft "5095"; repStart "-440"; chr2 rmsk exon 32383831 32384141 1244 - . gene_id "ERVLE_2p22.3a"; transcript_id "ERVLE_2p22.3a"; locus "ERVLE_2p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0401"; repClass "LTR"; repEnd "5094"; repFamily "ERVL"; repLeft "4766"; repStart "-573"; chr2 rmsk exon 32384193 32386444 7246 - . gene_id "ERVLE_2p22.3a"; transcript_id "ERVLE_2p22.3a"; locus "ERVLE_2p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0401"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "2260"; repStart "-1011"; chr2 rmsk exon 32386741 32387396 7246 - . gene_id "ERVLE_2p22.3a"; transcript_id "ERVLE_2p22.3a"; locus "ERVLE_2p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0401"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "1582"; repStart "-3395"; ### ERVLE_2p22.3b ### chr2 rmsk gene 32751649 32752652 . - . gene_id "ERVLE_2p22.3b"; transcript_id "ERVLE_2p22.3b"; locus "ERVLE_2p22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0402"; model_cov "1028"; model_pct "18.1"; chr2 rmsk exon 32751649 32752652 1866 - . gene_id "ERVLE_2p22.3b"; transcript_id "ERVLE_2p22.3b"; locus "ERVLE_2p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0402"; repClass "LTR"; repEnd "1881"; repFamily "ERVL"; repLeft "853"; repStart "-3786"; ### HUERSP1_2p22.3 ### chr2 rmsk gene 33611429 33618234 . + . gene_id "HUERSP1_2p22.3"; transcript_id "HUERSP1_2p22.3"; locus "HUERSP1_2p22.3"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0021"; model_cov "6159"; model_pct "98.3"; chr2 rmsk exon 33611429 33611700 2523 + . gene_id "HUERSP1_2p22.3"; transcript_id "HUERSP1_2p22.3"; locus "HUERSP1_2p22.3"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0021"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "-1"; repStart "459"; chr2 rmsk exon 33611701 33616900 27111 + . gene_id "HUERSP1_2p22.3"; transcript_id "HUERSP1_2p22.3"; locus "HUERSP1_2p22.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0021"; repClass "LTR"; repEnd "5310"; repFamily "ERV1"; repLeft "-953"; repStart "318"; chr2 rmsk exon 33617569 33618234 23853 + . gene_id "HUERSP1_2p22.3"; transcript_id "HUERSP1_2p22.3"; locus "HUERSP1_2p22.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0021"; repClass "LTR"; repEnd "6161"; repFamily "ERV1"; repLeft "-102"; repStart "4994"; ### HERVW_2p22.3 ### chr2 rmsk gene 33657422 33664455 . + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0035"; model_cov "5779"; model_pct "67.0"; chr2 rmsk exon 33657422 33657924 3443 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr2 rmsk exon 33657925 33658629 5418 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "696"; repFamily "ERV1"; repLeft "-7930"; repStart "1"; chr2 rmsk exon 33658782 33659984 9640 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "-6619"; repStart "802"; chr2 rmsk exon 33659977 33661923 29770 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "4416"; repFamily "ERV1"; repLeft "-4210"; repStart "2430"; chr2 rmsk exon 33662221 33663834 29770 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4417"; chr2 rmsk exon 33663856 33664146 2367 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 33664147 33664455 2452 + . gene_id "HERVW_2p22.3"; transcript_id "HERVW_2p22.3"; locus "HERVW_2p22.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0035"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER61_2p22.3a ### chr2 rmsk gene 33664461 33666453 . + . gene_id "MER61_2p22.3a"; transcript_id "MER61_2p22.3a"; locus "MER61_2p22.3a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0047"; model_cov "1724"; model_pct "33.0"; chr2 rmsk exon 33664461 33666453 10742 + . gene_id "MER61_2p22.3a"; transcript_id "MER61_2p22.3a"; locus "MER61_2p22.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0047"; repClass "LTR"; repEnd "3968"; repFamily "ERV1"; repLeft "-1249"; repStart "2244"; ### ERVLE_2p22.3c ### chr2 rmsk gene 33786947 33789463 . - . gene_id "ERVLE_2p22.3c"; transcript_id "ERVLE_2p22.3c"; locus "ERVLE_2p22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0404"; model_cov "1911"; model_pct "33.7"; chr2 rmsk exon 33786947 33787410 809 - . gene_id "ERVLE_2p22.3c"; transcript_id "ERVLE_2p22.3c"; locus "ERVLE_2p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0404"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "4481"; repStart "-674"; chr2 rmsk exon 33787526 33787618 1394 - . gene_id "ERVLE_2p22.3c"; transcript_id "ERVLE_2p22.3c"; locus "ERVLE_2p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0404"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4399"; repStart "-1192"; chr2 rmsk exon 33787920 33788477 1394 - . gene_id "ERVLE_2p22.3c"; transcript_id "ERVLE_2p22.3c"; locus "ERVLE_2p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0404"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "3824"; repStart "-1269"; chr2 rmsk exon 33788803 33789463 1394 - . gene_id "ERVLE_2p22.3c"; transcript_id "ERVLE_2p22.3c"; locus "ERVLE_2p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0404"; repClass "LTR"; repEnd "3823"; repFamily "ERVL"; repLeft "3074"; repStart "-1844"; ### MER4B_2p22.3 ### chr2 rmsk gene 33848020 33849740 . + . gene_id "MER4B_2p22.3"; transcript_id "MER4B_2p22.3"; locus "MER4B_2p22.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0052"; model_cov "1682"; model_pct "24.9"; chr2 rmsk exon 33848020 33849740 4217 + . gene_id "MER4B_2p22.3"; transcript_id "MER4B_2p22.3"; locus "MER4B_2p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0052"; repClass "LTR"; repEnd "4772"; repFamily "ERV1"; repLeft "-1986"; repStart "3090"; ### HML3_2p22.3 ### chr2 rmsk gene 33914037 33919523 . - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0024"; model_cov "4466"; model_pct "74.2"; chr2 rmsk exon 33914037 33914550 3988 - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0024"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 33914551 33915995 10597 - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0024"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4582"; repStart "0"; chr2 rmsk exon 33915982 33916212 1817 - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0024"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr2 rmsk exon 33916213 33919012 21986 - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0024"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr2 rmsk exon 33919013 33919523 4197 - . gene_id "HML3_2p22.3"; transcript_id "HML3_2p22.3"; locus "HML3_2p22.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0024"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### ERVLE_2p22.3d ### chr2 rmsk gene 34070451 34074983 . - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0405"; model_cov "2072"; model_pct "36.6"; chr2 rmsk exon 34070451 34070670 531 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "5393"; repStart "-7"; chr2 rmsk exon 34071460 34071762 692 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "4022"; repFamily "ERVL"; repLeft "3630"; repStart "-1645"; chr2 rmsk exon 34071785 34072660 2735 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "2712"; repStart "-2034"; chr2 rmsk exon 34073524 34073697 624 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "2530"; repStart "-2951"; chr2 rmsk exon 34073800 34073997 711 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "2404"; repFamily "ERVL"; repLeft "2195"; repStart "-3263"; chr2 rmsk exon 34074889 34074983 423 - . gene_id "ERVLE_2p22.3d"; transcript_id "ERVLE_2p22.3d"; locus "ERVLE_2p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0405"; repClass "LTR"; repEnd "99"; repFamily "ERVL"; repLeft "2"; repStart "-5568"; ### ERV316A3_2p22.3a ### chr2 rmsk gene 34305814 34306995 . + . gene_id "ERV316A3_2p22.3a"; transcript_id "ERV316A3_2p22.3a"; locus "ERV316A3_2p22.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0232"; model_cov "780"; model_pct "14.9"; chr2 rmsk exon 34305814 34306215 521 + . gene_id "ERV316A3_2p22.3a"; transcript_id "ERV316A3_2p22.3a"; locus "ERV316A3_2p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0232"; repClass "LTR"; repEnd "1334"; repFamily "ERVL"; repLeft "-3892"; repStart "899"; chr2 rmsk exon 34306575 34306924 517 + . gene_id "ERV316A3_2p22.3a"; transcript_id "ERV316A3_2p22.3a"; locus "ERV316A3_2p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0232"; repClass "LTR"; repEnd "2047"; repFamily "ERVL"; repLeft "-3179"; repStart "1702"; chr2 rmsk exon 34306931 34306995 227 + . gene_id "ERV316A3_2p22.3a"; transcript_id "ERV316A3_2p22.3a"; locus "ERV316A3_2p22.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0232"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "-118"; repStart "265"; ### ERV316A3_2p22.3b ### chr2 rmsk gene 34433042 34436259 . - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0233"; model_cov "2115"; model_pct "40.5"; chr2 rmsk exon 34433042 34433261 837 - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0233"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "3596"; repStart "-1415"; chr2 rmsk exon 34433317 34433660 639 - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0233"; repClass "LTR"; repEnd "2262"; repFamily "ERVL"; repLeft "1808"; repStart "-2964"; chr2 rmsk exon 34433836 34433871 2947 - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0233"; repClass "LTR"; repEnd "1452"; repFamily "ERVL"; repLeft "1413"; repStart "-3774"; chr2 rmsk exon 34434402 34435824 2947 - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0233"; repClass "LTR"; repEnd "1412"; repFamily "ERVL"; repLeft "5"; repStart "-3814"; chr2 rmsk exon 34435825 34436259 1138 - . gene_id "ERV316A3_2p22.3b"; transcript_id "ERV316A3_2p22.3b"; locus "ERV316A3_2p22.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0233"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### HERVH_2p22.3a ### chr2 rmsk gene 34694558 34696877 . + . gene_id "HERVH_2p22.3a"; transcript_id "HERVH_2p22.3a"; locus "HERVH_2p22.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0114"; model_cov "1920"; model_pct "24.9"; chr2 rmsk exon 34694558 34694892 2149 + . gene_id "HERVH_2p22.3a"; transcript_id "HERVH_2p22.3a"; locus "HERVH_2p22.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0114"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "25"; chr2 rmsk exon 34694923 34696877 11837 + . gene_id "HERVH_2p22.3a"; transcript_id "HERVH_2p22.3a"; locus "HERVH_2p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0114"; repClass "LTR"; repEnd "2618"; repFamily "ERV1"; repLeft "-5095"; repStart "698"; ### HERVH_2p22.3b ### chr2 rmsk gene 34696878 34701369 . - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0115"; model_cov "4117"; model_pct "53.4"; chr2 rmsk exon 34696878 34698021 7815 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "6551"; repStart "-4"; chr2 rmsk exon 34698011 34698621 4288 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr2 rmsk exon 34698618 34698797 1319 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chr2 rmsk exon 34698800 34699304 3298 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 34699295 34699439 861 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 34699434 34700478 6819 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1942"; repStart "-4726"; chr2 rmsk exon 34700481 34700954 3146 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "-7239"; chr2 rmsk exon 34700957 34701369 2568 - . gene_id "HERVH_2p22.3b"; transcript_id "HERVH_2p22.3b"; locus "HERVH_2p22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0115"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_2p22.3c ### chr2 rmsk gene 34701370 34702833 . + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0116"; model_cov "1202"; model_pct "15.6"; chr2 rmsk exon 34701370 34701750 2456 + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0116"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "2614"; chr2 rmsk exon 34701745 34701892 911 + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0116"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr2 rmsk exon 34701885 34702389 3401 + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0116"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 34702392 34702572 1398 + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0116"; repClass "LTR"; repEnd "4668"; repFamily "ERV1"; repLeft "-3045"; repStart "4488"; chr2 rmsk exon 34702574 34702833 1810 + . gene_id "HERVH_2p22.3c"; transcript_id "HERVH_2p22.3c"; locus "HERVH_2p22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0116"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "187"; ### ERV316A3_2p22.3c ### chr2 rmsk gene 34737167 34739830 . - . gene_id "ERV316A3_2p22.3c"; transcript_id "ERV316A3_2p22.3c"; locus "ERV316A3_2p22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0234"; model_cov "1454"; model_pct "27.8"; chr2 rmsk exon 34737167 34737721 879 - . gene_id "ERV316A3_2p22.3c"; transcript_id "ERV316A3_2p22.3c"; locus "ERV316A3_2p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0234"; repClass "LTR"; repEnd "4862"; repFamily "ERVL"; repLeft "4321"; repStart "-364"; chr2 rmsk exon 34738259 34738420 388 - . gene_id "ERV316A3_2p22.3c"; transcript_id "ERV316A3_2p22.3c"; locus "ERV316A3_2p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0234"; repClass "LTR"; repEnd "4224"; repFamily "ERVL"; repLeft "4066"; repStart "-1002"; chr2 rmsk exon 34739002 34739360 502 - . gene_id "ERV316A3_2p22.3c"; transcript_id "ERV316A3_2p22.3c"; locus "ERV316A3_2p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0234"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "3192"; repStart "-1456"; chr2 rmsk exon 34739656 34739830 502 - . gene_id "ERV316A3_2p22.3c"; transcript_id "ERV316A3_2p22.3c"; locus "ERV316A3_2p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0234"; repClass "LTR"; repEnd "3679"; repFamily "ERVL"; repLeft "3502"; repStart "-1547"; ### HERVH_2p22.3d ### chr2 rmsk gene 34789819 34796056 . + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0117"; model_cov "5613"; model_pct "72.8"; chr2 rmsk exon 34789819 34790227 2464 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "-13"; chr2 rmsk exon 34790230 34793109 15127 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 34793104 34793251 911 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr2 rmsk exon 34793244 34793739 3184 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 34793742 34793927 1182 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr2 rmsk exon 34793914 34794525 4258 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "-1333"; repStart "5769"; chr2 rmsk exon 34794499 34795638 7579 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "7704"; repFamily "ERV1"; repLeft "-9"; repStart "6529"; chr2 rmsk exon 34795645 34796056 2752 + . gene_id "HERVH_2p22.3d"; transcript_id "HERVH_2p22.3d"; locus "HERVH_2p22.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0117"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_2p22.3e ### chr2 rmsk gene 34800999 34806725 . - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0118"; model_cov "4912"; model_pct "63.7"; chr2 rmsk exon 34800999 34801407 2760 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 34801408 34801786 2333 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 34801785 34802000 1320 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 34802002 34802660 4353 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 34802655 34803162 3197 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr2 rmsk exon 34803153 34803299 912 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 34803297 34806310 17363 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "1"; repStart "-4729"; chr2 rmsk exon 34806313 34806725 2464 - . gene_id "HERVH_2p22.3e"; transcript_id "HERVH_2p22.3e"; locus "HERVH_2p22.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0118"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2p22.3d ### chr2 rmsk gene 34964811 34966459 . + . gene_id "ERV316A3_2p22.3d"; transcript_id "ERV316A3_2p22.3d"; locus "ERV316A3_2p22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0235"; model_cov "1213"; model_pct "23.2"; chr2 rmsk exon 34964811 34965988 2048 + . gene_id "ERV316A3_2p22.3d"; transcript_id "ERV316A3_2p22.3d"; locus "ERV316A3_2p22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0235"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "-149"; repStart "3864"; chr2 rmsk exon 34966154 34966459 892 + . gene_id "ERV316A3_2p22.3d"; transcript_id "ERV316A3_2p22.3d"; locus "ERV316A3_2p22.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0235"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-6"; repStart "133"; ### MER101_2p22.3 ### chr2 rmsk gene 35328929 35334325 . + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0047"; model_cov "4255"; model_pct "64.1"; chr2 rmsk exon 35328929 35329367 2328 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0047"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 35329738 35330608 2911 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "3207"; repFamily "ERV1"; repLeft "-3432"; repStart "2294"; chr2 rmsk exon 35330608 35330721 2293 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "1663"; repFamily "ERV1"; repLeft "-4976"; repStart "1510"; chr2 rmsk exon 35331321 35332054 2293 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "2659"; repFamily "ERV1"; repLeft "-3980"; repStart "1664"; chr2 rmsk exon 35332090 35332160 328 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "-3873"; repStart "2696"; chr2 rmsk exon 35332287 35332385 448 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "2865"; repFamily "ERV1"; repLeft "-3774"; repStart "2761"; chr2 rmsk exon 35332487 35334325 4249 + . gene_id "MER101_2p22.3"; transcript_id "MER101_2p22.3"; locus "MER101_2p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0047"; repClass "LTR"; repEnd "4497"; repFamily "ERV1"; repLeft "-2142"; repStart "2477"; ### LTR57_2p22.3 ### chr2 rmsk gene 35330722 35331320 . + . gene_id "LTR57_2p22.3"; transcript_id "LTR57_2p22.3"; locus "LTR57_2p22.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0021"; model_cov "589"; model_pct "11.0"; chr2 rmsk exon 35330722 35331320 2365 + . gene_id "LTR57_2p22.3"; transcript_id "LTR57_2p22.3"; locus "LTR57_2p22.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0021"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "-3762"; repStart "992"; ### HUERSP2_2p22.3 ### chr2 rmsk gene 35341769 35344327 . + . gene_id "HUERSP2_2p22.3"; transcript_id "HUERSP2_2p22.3"; locus "HUERSP2_2p22.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0018"; model_cov "1535"; model_pct "49.7"; chr2 rmsk exon 35341769 35342581 4790 + . gene_id "HUERSP2_2p22.3"; transcript_id "HUERSP2_2p22.3"; locus "HUERSP2_2p22.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0018"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "46"; chr2 rmsk exon 35342582 35342709 498 + . gene_id "HUERSP2_2p22.3"; transcript_id "HUERSP2_2p22.3"; locus "HUERSP2_2p22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0018"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "1"; chr2 rmsk exon 35342734 35344127 8213 + . gene_id "HUERSP2_2p22.3"; transcript_id "HUERSP2_2p22.3"; locus "HUERSP2_2p22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0018"; repClass "LTR"; repEnd "1619"; repFamily "ERV1"; repLeft "-1469"; repStart "210"; chr2 rmsk exon 35344144 35344327 1025 + . gene_id "HUERSP2_2p22.3"; transcript_id "HUERSP2_2p22.3"; locus "HUERSP2_2p22.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0018"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "638"; ### HERVH_2p22.3f ### chr2 rmsk gene 35436928 35442587 . - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0119"; model_cov "5120"; model_pct "66.4"; chr2 rmsk exon 35436928 35437324 2526 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr2 rmsk exon 35437325 35437700 2292 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 35437701 35437937 1369 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr2 rmsk exon 35437918 35438579 4355 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 35438582 35439434 6122 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr2 rmsk exon 35439429 35442183 14854 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 35442186 35442587 2675 - . gene_id "HERVH_2p22.3f"; transcript_id "HERVH_2p22.3f"; locus "HERVH_2p22.3f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0119"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2p22.3e ### chr2 rmsk gene 35445138 35448048 . - . gene_id "ERV316A3_2p22.3e"; transcript_id "ERV316A3_2p22.3e"; locus "ERV316A3_2p22.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0236"; model_cov "1972"; model_pct "37.7"; chr2 rmsk exon 35445138 35445522 886 - . gene_id "ERV316A3_2p22.3e"; transcript_id "ERV316A3_2p22.3e"; locus "ERV316A3_2p22.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0236"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "24"; repStart "-22"; chr2 rmsk exon 35445584 35447212 3055 - . gene_id "ERV316A3_2p22.3e"; transcript_id "ERV316A3_2p22.3e"; locus "ERV316A3_2p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0236"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "3652"; repStart "-44"; chr2 rmsk exon 35447278 35447592 507 - . gene_id "ERV316A3_2p22.3e"; transcript_id "ERV316A3_2p22.3e"; locus "ERV316A3_2p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0236"; repClass "LTR"; repEnd "3205"; repFamily "ERVL"; repLeft "2763"; repStart "-2021"; chr2 rmsk exon 35447715 35448048 1268 - . gene_id "ERV316A3_2p22.3e"; transcript_id "ERV316A3_2p22.3e"; locus "ERV316A3_2p22.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0236"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "94"; repStart "-19"; ### MER61_2p22.3b ### chr2 rmsk gene 35517180 35523499 . - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0048"; model_cov "5300"; model_pct "100.0"; chr2 rmsk exon 35517180 35517475 2599 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0048"; repClass "LTR"; repEnd "297"; repFamily "ERV1"; repLeft "2"; repStart "-131"; chr2 rmsk exon 35517476 35521097 19132 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0048"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1119"; repStart "0"; chr2 rmsk exon 35521401 35521573 3340 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0048"; repClass "LTR"; repEnd "1934"; repFamily "ERV1"; repLeft "1780"; repStart "-3283"; chr2 rmsk exon 35521878 35522494 3081 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0048"; repClass "LTR"; repEnd "1035"; repFamily "ERV1"; repLeft "407"; repStart "-4182"; chr2 rmsk exon 35522507 35522819 1107 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0048"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "181"; repStart "-4763"; chr2 rmsk exon 35522923 35523084 631 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0048"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "2"; repStart "-5068"; chr2 rmsk exon 35523085 35523499 2731 - . gene_id "MER61_2p22.3b"; transcript_id "MER61_2p22.3b"; locus "MER61_2p22.3b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0048"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_2p22.3f ### chr2 rmsk gene 35644113 35646695 . + . gene_id "ERV316A3_2p22.3f"; transcript_id "ERV316A3_2p22.3f"; locus "ERV316A3_2p22.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0237"; model_cov "1317"; model_pct "25.2"; chr2 rmsk exon 35644113 35644526 997 + . gene_id "ERV316A3_2p22.3f"; transcript_id "ERV316A3_2p22.3f"; locus "ERV316A3_2p22.3f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0237"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr2 rmsk exon 35645071 35645888 1468 + . gene_id "ERV316A3_2p22.3f"; transcript_id "ERV316A3_2p22.3f"; locus "ERV316A3_2p22.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0237"; repClass "LTR"; repEnd "1803"; repFamily "ERVL"; repLeft "-3423"; repStart "964"; chr2 rmsk exon 35646156 35646695 738 + . gene_id "ERV316A3_2p22.3f"; transcript_id "ERV316A3_2p22.3f"; locus "ERV316A3_2p22.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0237"; repClass "LTR"; repEnd "2057"; repFamily "ERVL"; repLeft "-3169"; repStart "1579"; ### ERV316A3_2p22.3g ### chr2 rmsk gene 35653338 35658408 . + . gene_id "ERV316A3_2p22.3g"; transcript_id "ERV316A3_2p22.3g"; locus "ERV316A3_2p22.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0238"; model_cov "2731"; model_pct "52.3"; chr2 rmsk exon 35653338 35654466 1638 + . gene_id "ERV316A3_2p22.3g"; transcript_id "ERV316A3_2p22.3g"; locus "ERV316A3_2p22.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0238"; repClass "LTR"; repEnd "2969"; repFamily "ERVL"; repLeft "-2257"; repStart "1695"; chr2 rmsk exon 35656199 35656270 2769 + . gene_id "ERV316A3_2p22.3g"; transcript_id "ERV316A3_2p22.3g"; locus "ERV316A3_2p22.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0238"; repClass "LTR"; repEnd "3834"; repFamily "ERVL"; repLeft "-1392"; repStart "3768"; chr2 rmsk exon 35656584 35658000 2769 + . gene_id "ERV316A3_2p22.3g"; transcript_id "ERV316A3_2p22.3g"; locus "ERV316A3_2p22.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0238"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3835"; chr2 rmsk exon 35658001 35658408 1089 + . gene_id "ERV316A3_2p22.3g"; transcript_id "ERV316A3_2p22.3g"; locus "ERV316A3_2p22.3g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0238"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVL18_2p22.3 ### chr2 rmsk gene 35787746 35790802 . + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0014"; model_cov "2137"; model_pct "35.3"; chr2 rmsk exon 35787746 35788104 2241 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 35788129 35788421 1441 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-5669"; repStart "95"; chr2 rmsk exon 35788421 35788925 1594 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1241"; chr2 rmsk exon 35788925 35789192 1294 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr2 rmsk exon 35789192 35790071 5069 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "3578"; repFamily "ERVL"; repLeft "-2469"; repStart "2720"; chr2 rmsk exon 35790075 35790168 613 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr2 rmsk exon 35790437 35790802 2341 + . gene_id "HERVL18_2p22.3"; transcript_id "HERVL18_2p22.3"; locus "HERVL18_2p22.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0014"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_2p22.3g ### chr2 rmsk gene 35814050 35818777 . + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0120"; model_cov "4361"; model_pct "56.5"; chr2 rmsk exon 35814050 35814123 313 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "-6946"; repStart "693"; chr2 rmsk exon 35814097 35816482 14661 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "614"; chr2 rmsk exon 35816480 35816629 947 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 35816620 35817123 3204 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3492"; chr2 rmsk exon 35817123 35817782 4211 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "-2572"; repStart "4481"; chr2 rmsk exon 35817785 35818000 1280 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 35818001 35818372 2172 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 35818373 35818777 2648 + . gene_id "HERVH_2p22.3g"; transcript_id "HERVH_2p22.3g"; locus "HERVH_2p22.3g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0120"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2p22.3h ### chr2 rmsk gene 35918470 35921590 . - . gene_id "ERV316A3_2p22.3h"; transcript_id "ERV316A3_2p22.3h"; locus "ERV316A3_2p22.3h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0239"; model_cov "2466"; model_pct "47.2"; chr2 rmsk exon 35918470 35918596 408 - . gene_id "ERV316A3_2p22.3h"; transcript_id "ERV316A3_2p22.3h"; locus "ERV316A3_2p22.3h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0239"; repClass "LTR"; repEnd "138"; repFamily "ERVL"; repLeft "13"; repStart "-313"; chr2 rmsk exon 35918606 35919714 2741 - . gene_id "ERV316A3_2p22.3h"; transcript_id "ERV316A3_2p22.3h"; locus "ERV316A3_2p22.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0239"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4112"; repStart "0"; chr2 rmsk exon 35920037 35920992 2191 - . gene_id "ERV316A3_2p22.3h"; transcript_id "ERV316A3_2p22.3h"; locus "ERV316A3_2p22.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0239"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "2677"; repStart "-1400"; chr2 rmsk exon 35921349 35921590 2191 - . gene_id "ERV316A3_2p22.3h"; transcript_id "ERV316A3_2p22.3h"; locus "ERV316A3_2p22.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0239"; repClass "LTR"; repEnd "3207"; repFamily "ERVL"; repLeft "3004"; repStart "-2019"; ### ERV316A3_2p22.3i ### chr2 rmsk gene 36282175 36283242 . - . gene_id "ERV316A3_2p22.3i"; transcript_id "ERV316A3_2p22.3i"; locus "ERV316A3_2p22.3i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0240"; model_cov "1098"; model_pct "21.0"; chr2 rmsk exon 36282175 36283242 2438 - . gene_id "ERV316A3_2p22.3i"; transcript_id "ERV316A3_2p22.3i"; locus "ERV316A3_2p22.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0240"; repClass "LTR"; repEnd "3871"; repFamily "ERVL"; repLeft "2773"; repStart "-1355"; ### HERVH_2p22.2a ### chr2 rmsk gene 36599100 36604761 . + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0121"; model_cov "4908"; model_pct "63.6"; chr2 rmsk exon 36599100 36599525 3401 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 36599528 36602439 19391 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 36602434 36602581 880 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 36602572 36603073 3451 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 36603076 36603736 4294 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 36603738 36603954 1409 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 36603953 36604332 2560 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 36604333 36604761 3563 + . gene_id "HERVH_2p22.2a"; transcript_id "HERVH_2p22.2a"; locus "HERVH_2p22.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0121"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFH19_2p22.2 ### chr2 rmsk gene 37128668 37135454 . + . gene_id "HERVFH19_2p22.2"; transcript_id "HERVFH19_2p22.2"; locus "HERVFH19_2p22.2"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0005"; model_cov "6121"; model_pct "79.3"; chr2 rmsk exon 37128668 37128731 424 + . gene_id "HERVFH19_2p22.2"; transcript_id "HERVFH19_2p22.2"; locus "HERVFH19_2p22.2"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0005"; repClass "LTR"; repEnd "65"; repFamily "ERV1"; repLeft "-421"; repStart "1"; chr2 rmsk exon 37128733 37130096 46861 + . gene_id "HERVFH19_2p22.2"; transcript_id "HERVFH19_2p22.2"; locus "HERVFH19_2p22.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0005"; repClass "LTR"; repEnd "2863"; repFamily "ERV1"; repLeft "-4856"; repStart "1493"; chr2 rmsk exon 37130402 37132310 46861 + . gene_id "HERVFH19_2p22.2"; transcript_id "HERVFH19_2p22.2"; locus "HERVFH19_2p22.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0005"; repClass "LTR"; repEnd "4779"; repFamily "ERV1"; repLeft "-2940"; repStart "2864"; chr2 rmsk exon 37132610 37135454 46861 + . gene_id "HERVFH19_2p22.2"; transcript_id "HERVFH19_2p22.2"; locus "HERVFH19_2p22.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0005"; repClass "LTR"; repEnd "7616"; repFamily "ERV1"; repLeft "-103"; repStart "4780"; ### HERVH_2p22.2b ### chr2 rmsk gene 37381018 37385604 . - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0122"; model_cov "4142"; model_pct "53.7"; chr2 rmsk exon 37381018 37381423 2910 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 37381424 37381791 2243 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 37381792 37381993 1193 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 37381995 37382523 3723 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4618"; repStart "-2564"; chr2 rmsk exon 37382522 37383333 5847 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "3952"; repFamily "ERV1"; repLeft "3140"; repStart "-3761"; chr2 rmsk exon 37383331 37385519 14775 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "793"; repStart "-4729"; chr2 rmsk exon 37385540 37385604 496 - . gene_id "HERVH_2p22.2b"; transcript_id "HERVH_2p22.2b"; locus "HERVH_2p22.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0122"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "358"; repStart "-40"; ### ERVLE_2p22.2a ### chr2 rmsk gene 37471238 37472249 . + . gene_id "ERVLE_2p22.2a"; transcript_id "ERVLE_2p22.2a"; locus "ERVLE_2p22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0411"; model_cov "1036"; model_pct "18.3"; chr2 rmsk exon 37471238 37472249 2012 + . gene_id "ERVLE_2p22.2a"; transcript_id "ERVLE_2p22.2a"; locus "ERVLE_2p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0411"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4517"; repStart "114"; ### HERVH_2p22.2c ### chr2 rmsk gene 38080802 38086512 . - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0123"; model_cov "4908"; model_pct "63.6"; chr2 rmsk exon 38080802 38081201 2715 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 38081202 38081579 2413 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 38081578 38081794 1399 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 38081796 38082457 4552 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 38082460 38082962 3589 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 38082953 38083100 888 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 38083095 38086112 20637 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 38086115 38086512 2679 - . gene_id "HERVH_2p22.2c"; transcript_id "HERVH_2p22.2c"; locus "HERVH_2p22.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0123"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2p22.2 ### chr2 rmsk gene 38246110 38252249 . + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0241"; model_cov "4109"; model_pct "78.6"; chr2 rmsk exon 38246110 38246513 1336 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 38246526 38246674 505 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "-4844"; repStart "234"; chr2 rmsk exon 38246967 38247072 505 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "-4752"; repStart "383"; chr2 rmsk exon 38247299 38248275 4349 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "2786"; repFamily "ERVL"; repLeft "-2440"; repStart "1689"; chr2 rmsk exon 38248746 38249403 4349 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "3319"; repFamily "ERVL"; repLeft "-1907"; repStart "2631"; chr2 rmsk exon 38249700 38251807 6496 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-20"; repStart "3121"; chr2 rmsk exon 38251829 38252249 1106 + . gene_id "ERV316A3_2p22.2"; transcript_id "ERV316A3_2p22.2"; locus "ERV316A3_2p22.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0241"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERVLE_2p22.2b ### chr2 rmsk gene 38280065 38281906 . + . gene_id "ERVLE_2p22.2b"; transcript_id "ERVLE_2p22.2b"; locus "ERVLE_2p22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0412"; model_cov "1285"; model_pct "22.7"; chr2 rmsk exon 38280065 38280148 406 + . gene_id "ERVLE_2p22.2b"; transcript_id "ERVLE_2p22.2b"; locus "ERVLE_2p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0412"; repClass "LTR"; repEnd "1160"; repFamily "ERVL"; repLeft "-4507"; repStart "1077"; chr2 rmsk exon 38280138 38280361 1900 + . gene_id "ERVLE_2p22.2b"; transcript_id "ERVLE_2p22.2b"; locus "ERVLE_2p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0412"; repClass "LTR"; repEnd "4238"; repFamily "ERVL"; repLeft "-1429"; repStart "4006"; chr2 rmsk exon 38280663 38280813 1900 + . gene_id "ERVLE_2p22.2b"; transcript_id "ERVLE_2p22.2b"; locus "ERVLE_2p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0412"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "-1262"; repStart "4239"; chr2 rmsk exon 38281117 38281906 1900 + . gene_id "ERVLE_2p22.2b"; transcript_id "ERVLE_2p22.2b"; locus "ERVLE_2p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0412"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "-457"; repStart "4406"; ### ERVL_2p22.1a ### chr2 rmsk gene 39129621 39132084 . + . gene_id "ERVL_2p22.1a"; transcript_id "ERVL_2p22.1a"; locus "ERVL_2p22.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0033"; model_cov "1211"; model_pct "21.0"; chr2 rmsk exon 39129621 39130509 7321 + . gene_id "ERVL_2p22.1a"; transcript_id "ERVL_2p22.1a"; locus "ERVL_2p22.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0033"; repClass "LTR"; repEnd "5421"; repFamily "ERVL"; repLeft "-336"; repStart "4519"; chr2 rmsk exon 39130791 39131082 7321 + . gene_id "ERVL_2p22.1a"; transcript_id "ERVL_2p22.1a"; locus "ERVL_2p22.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0033"; repClass "LTR"; repEnd "5692"; repFamily "ERVL"; repLeft "-65"; repStart "5422"; chr2 rmsk exon 39131419 39131470 7321 + . gene_id "ERVL_2p22.1a"; transcript_id "ERVL_2p22.1a"; locus "ERVL_2p22.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0033"; repClass "LTR"; repEnd "5732"; repFamily "ERVL"; repLeft "-25"; repStart "5693"; chr2 rmsk exon 39131557 39132084 2835 + . gene_id "ERVL_2p22.1a"; transcript_id "ERVL_2p22.1a"; locus "ERVL_2p22.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0033"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_2p22.1a ### chr2 rmsk gene 39219723 39220586 . + . gene_id "ERVLE_2p22.1a"; transcript_id "ERVLE_2p22.1a"; locus "ERVLE_2p22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0414"; model_cov "868"; model_pct "15.3"; chr2 rmsk exon 39219723 39220586 1119 + . gene_id "ERVLE_2p22.1a"; transcript_id "ERVLE_2p22.1a"; locus "ERVLE_2p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0414"; repClass "LTR"; repEnd "1017"; repFamily "ERVL"; repLeft "-4650"; repStart "149"; ### ERVL_2p22.1b ### chr2 rmsk gene 39551801 39557615 . - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0034"; model_cov "2186"; model_pct "38.0"; chr2 rmsk exon 39551801 39552059 757 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "2426"; repStart "-3046"; chr2 rmsk exon 39554114 39554205 348 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "2329"; repFamily "ERVL"; repLeft "2240"; repStart "-3428"; chr2 rmsk exon 39554186 39555245 1801 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "2243"; repFamily "ERVL"; repLeft "1096"; repStart "-3514"; chr2 rmsk exon 39556046 39556384 815 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "766"; repFamily "ERVL"; repLeft "414"; repStart "-4991"; chr2 rmsk exon 39556665 39556975 815 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "100"; repStart "-5344"; chr2 rmsk exon 39557562 39557615 1254 - . gene_id "ERVL_2p22.1b"; transcript_id "ERVL_2p22.1b"; locus "ERVL_2p22.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0034"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "517"; repStart "0"; ### ERVLE_2p22.1b ### chr2 rmsk gene 39730056 39733131 . - . gene_id "ERVLE_2p22.1b"; transcript_id "ERVLE_2p22.1b"; locus "ERVLE_2p22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0415"; model_cov "2281"; model_pct "40.3"; chr2 rmsk exon 39730056 39730220 481 - . gene_id "ERVLE_2p22.1b"; transcript_id "ERVLE_2p22.1b"; locus "ERVLE_2p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0415"; repClass "LTR"; repEnd "4976"; repFamily "ERVL"; repLeft "4811"; repStart "-691"; chr2 rmsk exon 39730744 39731258 1440 - . gene_id "ERVLE_2p22.1b"; transcript_id "ERVLE_2p22.1b"; locus "ERVLE_2p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0415"; repClass "LTR"; repEnd "4801"; repFamily "ERVL"; repLeft "4240"; repStart "-866"; chr2 rmsk exon 39731733 39732921 2560 - . gene_id "ERVLE_2p22.1b"; transcript_id "ERVLE_2p22.1b"; locus "ERVLE_2p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0415"; repClass "LTR"; repEnd "4183"; repFamily "ERVL"; repLeft "2879"; repStart "-1484"; chr2 rmsk exon 39732897 39733131 663 - . gene_id "ERVLE_2p22.1b"; transcript_id "ERVLE_2p22.1b"; locus "ERVLE_2p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0415"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "2027"; repStart "-3389"; ### HERVL_2p22.1a ### chr2 rmsk gene 39958235 39965503 . - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0133"; model_cov "5660"; model_pct "100.0"; chr2 rmsk exon 39958235 39958478 1667 - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0133"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "1"; repStart "-207"; chr2 rmsk exon 39958479 39963941 38390 - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0133"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "124"; repStart "0"; chr2 rmsk exon 39964224 39964354 872 - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0133"; repClass "LTR"; repEnd "131"; repFamily "ERVL"; repLeft "1"; repStart "-5523"; chr2 rmsk exon 39964355 39964375 1197 - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0133"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "437"; repStart "0"; chr2 rmsk exon 39965015 39965503 2165 - . gene_id "HERVL_2p22.1a"; transcript_id "HERVL_2p22.1a"; locus "HERVL_2p22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0133"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-98"; repStart "-17"; ### ERV316A3_2p22.1 ### chr2 rmsk gene 40721936 40722910 . - . gene_id "ERV316A3_2p22.1"; transcript_id "ERV316A3_2p22.1"; locus "ERV316A3_2p22.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0242"; model_cov "986"; model_pct "18.9"; chr2 rmsk exon 40721936 40722910 1491 - . gene_id "ERV316A3_2p22.1"; transcript_id "ERV316A3_2p22.1"; locus "ERV316A3_2p22.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0242"; repClass "LTR"; repEnd "4193"; repFamily "ERVL"; repLeft "3207"; repStart "-1033"; ### ERVLE_2p22.1c ### chr2 rmsk gene 40741602 40743249 . - . gene_id "ERVLE_2p22.1c"; transcript_id "ERVLE_2p22.1c"; locus "ERVLE_2p22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0416"; model_cov "799"; model_pct "14.1"; chr2 rmsk exon 40741602 40741944 794 - . gene_id "ERVLE_2p22.1c"; transcript_id "ERVLE_2p22.1c"; locus "ERVLE_2p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0416"; repClass "LTR"; repEnd "1656"; repFamily "ERVL"; repLeft "1291"; repStart "-4011"; chr2 rmsk exon 40742103 40742271 305 - . gene_id "ERVLE_2p22.1c"; transcript_id "ERVLE_2p22.1c"; locus "ERVLE_2p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0416"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "953"; repStart "-4525"; chr2 rmsk exon 40743013 40743249 341 - . gene_id "ERVLE_2p22.1c"; transcript_id "ERVLE_2p22.1c"; locus "ERVLE_2p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0416"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "279"; repStart "-5143"; ### ERVLB4_2p22.1 ### chr2 rmsk gene 40894129 40895435 . + . gene_id "ERVLB4_2p22.1"; transcript_id "ERVLB4_2p22.1"; locus "ERVLB4_2p22.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0155"; model_cov "838"; model_pct "14.7"; chr2 rmsk exon 40894129 40894582 2291 + . gene_id "ERVLB4_2p22.1"; transcript_id "ERVLB4_2p22.1"; locus "ERVLB4_2p22.1"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0155"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-265"; repStart "1"; chr2 rmsk exon 40894639 40895435 3442 + . gene_id "ERVLB4_2p22.1"; transcript_id "ERVLB4_2p22.1"; locus "ERVLB4_2p22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0155"; repClass "LTR"; repEnd "839"; repFamily "ERVL"; repLeft "-4875"; repStart "1"; ### HERVL_2p22.1b ### chr2 rmsk gene 41268984 41270406 . + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_0135"; model_cov "762"; model_pct "13.5"; chr2 rmsk exon 41268984 41269246 932 + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0135"; repClass "LTR"; repEnd "4659"; repFamily "ERVL"; repLeft "-995"; repStart "4402"; chr2 rmsk exon 41269247 41269825 2002 + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0135"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 41269826 41270084 932 + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0135"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "-702"; repStart "4660"; chr2 rmsk exon 41270170 41270251 269 + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0135"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-588"; repStart "4982"; chr2 rmsk exon 41270286 41270406 250 + . gene_id "HERVL_2p22.1b"; transcript_id "HERVL_2p22.1b"; locus "HERVL_2p22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0135"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "-379"; repStart "5146"; ### HERVH_2p22.1 ### chr2 rmsk gene 41377833 41385713 . + . gene_id "HERVH_2p22.1"; transcript_id "HERVH_2p22.1"; locus "HERVH_2p22.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0124"; model_cov "6889"; model_pct "89.3"; chr2 rmsk exon 41377833 41378263 2637 + . gene_id "HERVH_2p22.1"; transcript_id "HERVH_2p22.1"; locus "HERVH_2p22.1"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0124"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 41378264 41384502 14793 + . gene_id "HERVH_2p22.1"; transcript_id "HERVH_2p22.1"; locus "HERVH_2p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0124"; repClass "LTR"; repEnd "6091"; repFamily "ERV1"; repLeft "-1622"; repStart "1"; chr2 rmsk exon 41384489 41385287 4804 + . gene_id "HERVH_2p22.1"; transcript_id "HERVH_2p22.1"; locus "HERVH_2p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0124"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6914"; chr2 rmsk exon 41385288 41385713 2563 + . gene_id "HERVH_2p22.1"; transcript_id "HERVH_2p22.1"; locus "HERVH_2p22.1"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0124"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_2p22.1 ### chr2 rmsk gene 41493320 41502091 . + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0021"; model_cov "7245"; model_pct "81.2"; chr2 rmsk exon 41493320 41493989 3950 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 41493990 41498519 15432 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "4889"; repFamily "ERV1"; repLeft "-4030"; repStart "1"; chr2 rmsk exon 41498829 41500000 10662 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "6093"; repFamily "ERV1"; repLeft "-2826"; repStart "4890"; chr2 rmsk exon 41500001 41500896 5566 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "6991"; repFamily "ERV1"; repLeft "-1928"; repStart "6094"; chr2 rmsk exon 41501280 41501536 1521 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "-3"; repStart "8659"; chr2 rmsk exon 41501542 41502091 4172 + . gene_id "HUERSP3_2p22.1"; transcript_id "HUERSP3_2p22.1"; locus "HUERSP3_2p22.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0021"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "-130"; repStart "1"; ### PABLB_2p21 ### chr2 rmsk gene 41781511 41782685 . + . gene_id "PABLB_2p21"; transcript_id "PABLB_2p21"; locus "PABLB_2p21"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0009"; model_cov "1189"; model_pct "16.7"; chr2 rmsk exon 41781511 41782685 482 + . gene_id "PABLB_2p21"; transcript_id "PABLB_2p21"; locus "PABLB_2p21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0009"; repClass "LTR"; repEnd "3843"; repFamily "ERV1"; repLeft "-3279"; repStart "2654"; ### MER4_2p21 ### chr2 rmsk gene 42773889 42783034 . + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0076"; model_cov "5373"; model_pct "81.4"; chr2 rmsk exon 42773889 42774281 3339 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0076"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "84"; chr2 rmsk exon 42774283 42774966 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "832"; repFamily "ERV1"; repLeft "-5766"; repStart "1"; chr2 rmsk exon 42775270 42775945 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "1378"; repFamily "ERV1"; repLeft "-5220"; repStart "258"; chr2 rmsk exon 42775981 42776231 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "1798"; repFamily "ERV1"; repLeft "-4800"; repStart "1379"; chr2 rmsk exon 42776538 42776625 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "1878"; repFamily "ERV1"; repLeft "-4720"; repStart "1799"; chr2 rmsk exon 42776931 42777019 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "1965"; repFamily "ERV1"; repLeft "-4633"; repStart "1879"; chr2 rmsk exon 42777334 42777484 3331 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "2096"; repFamily "ERV1"; repLeft "-4502"; repStart "1966"; chr2 rmsk exon 42777615 42778335 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "-2528"; repStart "3882"; chr2 rmsk exon 42778628 42778839 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "4281"; repFamily "ERV1"; repLeft "-2317"; repStart "4071"; chr2 rmsk exon 42779129 42779330 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "4510"; repFamily "ERV1"; repLeft "-2088"; repStart "4282"; chr2 rmsk exon 42779619 42780197 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "-1490"; repStart "4511"; chr2 rmsk exon 42780505 42780785 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "5386"; repFamily "ERV1"; repLeft "-1212"; repStart "5109"; chr2 rmsk exon 42781086 42781590 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "-686"; repStart "5387"; chr2 rmsk exon 42781888 42782558 15506 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0076"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5913"; chr2 rmsk exon 42782566 42783034 3570 + . gene_id "MER4_2p21"; transcript_id "MER4_2p21"; locus "MER4_2p21"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0076"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_2p21 ### chr2 rmsk gene 42882051 42891594 . + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0159"; model_cov "5722"; model_pct "100.0"; chr2 rmsk exon 42882051 42882450 2369 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-65"; repStart "1"; chr2 rmsk exon 42882498 42882539 2369 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-1"; repStart "451"; chr2 rmsk exon 42882540 42885076 29826 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3066"; repStart "1"; chr2 rmsk exon 42885388 42886779 29826 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "4035"; repFamily "ERVL"; repLeft "-1679"; repStart "2649"; chr2 rmsk exon 42887081 42888154 29826 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "-579"; repStart "4036"; chr2 rmsk exon 42888407 42888600 2877 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "5307"; repFamily "ERVL"; repLeft "-407"; repStart "5121"; chr2 rmsk exon 42889237 42889593 2877 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "5633"; repFamily "ERVL"; repLeft "-81"; repStart "5308"; chr2 rmsk exon 42890290 42890304 2877 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "-70"; repStart "5634"; chr2 rmsk exon 42891006 42891079 2877 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5645"; chr2 rmsk exon 42891080 42891268 1267 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "199"; repFamily "ERVL"; repLeft "-316"; repStart "-4"; chr2 rmsk exon 42891567 42891594 1267 + . gene_id "ERVLB4_2p21"; transcript_id "ERVLB4_2p21"; locus "ERVLB4_2p21"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0159"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "-292"; repStart "200"; ### HERVL40_2p21 ### chr2 rmsk gene 43435842 43437785 . + . gene_id "HERVL40_2p21"; transcript_id "HERVL40_2p21"; locus "HERVL40_2p21"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0039"; model_cov "784"; model_pct "14.2"; chr2 rmsk exon 43435842 43436344 2070 + . gene_id "HERVL40_2p21"; transcript_id "HERVL40_2p21"; locus "HERVL40_2p21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0039"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "-873"; repStart "4135"; chr2 rmsk exon 43437360 43437614 1039 + . gene_id "HERVL40_2p21"; transcript_id "HERVL40_2p21"; locus "HERVL40_2p21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0039"; repClass "LTR"; repEnd "5498"; repFamily "ERVL"; repLeft "-32"; repStart "5236"; chr2 rmsk exon 43437690 43437785 512 + . gene_id "HERVL40_2p21"; transcript_id "HERVL40_2p21"; locus "HERVL40_2p21"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0039"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-373"; repStart "55"; ### HERVH_2p21a ### chr2 rmsk gene 44018447 44024529 . - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0125"; model_cov "5575"; model_pct "72.3"; chr2 rmsk exon 44018447 44018730 1869 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "-6"; repStart "-146"; chr2 rmsk exon 44018731 44019287 3561 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr2 rmsk exon 44019281 44019543 1409 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr2 rmsk exon 44019541 44021371 6727 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "6311"; repFamily "ERV1"; repLeft "4199"; repStart "-1402"; chr2 rmsk exon 44021351 44023593 13774 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "801"; repStart "-4718"; chr2 rmsk exon 44023654 44023886 2588 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "242"; repStart "-7254"; chr2 rmsk exon 44024186 44024411 2588 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "12"; repStart "-7472"; chr2 rmsk exon 44024431 44024529 815 - . gene_id "HERVH_2p21a"; transcript_id "HERVH_2p21a"; locus "HERVH_2p21a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0125"; repClass "LTR"; repEnd "457"; repFamily "ERV1"; repLeft "359"; repStart "-7"; ### MER61_2p21 ### chr2 rmsk gene 44444649 44446040 . + . gene_id "MER61_2p21"; transcript_id "MER61_2p21"; locus "MER61_2p21"; category "internal"; intModel "MER61-int"; locid "MER61-int_0049"; model_cov "1364"; model_pct "26.1"; chr2 rmsk exon 44444649 44445645 7079 + . gene_id "MER61_2p21"; transcript_id "MER61_2p21"; locus "MER61_2p21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0049"; repClass "LTR"; repEnd "4814"; repFamily "ERV1"; repLeft "-403"; repStart "3796"; chr2 rmsk exon 44445694 44446040 2268 + . gene_id "MER61_2p21"; transcript_id "MER61_2p21"; locus "MER61_2p21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0049"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4871"; ### HERVH_2p21b ### chr2 rmsk gene 45034461 45040152 . - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0126"; model_cov "4718"; model_pct "61.2"; chr2 rmsk exon 45034461 45034888 3430 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 45034889 45035478 2309 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 45035471 45036128 4037 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "5156"; repFamily "ERV1"; repLeft "4488"; repStart "-2557"; chr2 rmsk exon 45036131 45036632 3236 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 45036607 45036770 842 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "3140"; repStart "-4401"; chr2 rmsk exon 45036765 45039756 19686 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 45039759 45040152 2906 - . gene_id "HERVH_2p21b"; transcript_id "HERVH_2p21b"; locus "HERVH_2p21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0126"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_2p16.3a ### chr2 rmsk gene 47582656 47591646 . - . gene_id "HERVH_2p16.3a"; transcript_id "HERVH_2p16.3a"; locus "HERVH_2p16.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0127"; model_cov "7712"; model_pct "100.0"; chr2 rmsk exon 47582656 47583173 3111 - . gene_id "HERVH_2p16.3a"; transcript_id "HERVH_2p16.3a"; locus "HERVH_2p16.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0127"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 47583174 47591063 37663 - . gene_id "HERVH_2p16.3a"; transcript_id "HERVH_2p16.3a"; locus "HERVH_2p16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0127"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 47591064 47591646 2861 - . gene_id "HERVH_2p16.3a"; transcript_id "HERVH_2p16.3a"; locus "HERVH_2p16.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0127"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_2p16.3 ### chr2 rmsk gene 47660068 47660924 . + . gene_id "MER101_2p16.3"; transcript_id "MER101_2p16.3"; locus "MER101_2p16.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0048"; model_cov "867"; model_pct "13.1"; chr2 rmsk exon 47660068 47660924 4612 + . gene_id "MER101_2p16.3"; transcript_id "MER101_2p16.3"; locus "MER101_2p16.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0048"; repClass "LTR"; repEnd "3627"; repFamily "ERV1"; repLeft "-3012"; repStart "2760"; ### MER34B_2p16.3a ### chr2 rmsk gene 47662380 47663103 . + . gene_id "MER34B_2p16.3a"; transcript_id "MER34B_2p16.3a"; locus "MER34B_2p16.3a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0034"; model_cov "661"; model_pct "12.3"; chr2 rmsk exon 47662380 47662631 923 + . gene_id "MER34B_2p16.3a"; transcript_id "MER34B_2p16.3a"; locus "MER34B_2p16.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0034"; repClass "LTR"; repEnd "1288"; repFamily "ERV1"; repLeft "-4068"; repStart "1019"; chr2 rmsk exon 47662604 47662681 421 + . gene_id "MER34B_2p16.3a"; transcript_id "MER34B_2p16.3a"; locus "MER34B_2p16.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0034"; repClass "LTR"; repEnd "1116"; repFamily "ERV1"; repLeft "-4240"; repStart "1035"; chr2 rmsk exon 47662799 47663103 934 + . gene_id "MER34B_2p16.3a"; transcript_id "MER34B_2p16.3a"; locus "MER34B_2p16.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0034"; repClass "LTR"; repEnd "1529"; repFamily "ERV1"; repLeft "-3827"; repStart "1218"; ### MER34B_2p16.3b ### chr2 rmsk gene 47689825 47690661 . - . gene_id "MER34B_2p16.3b"; transcript_id "MER34B_2p16.3b"; locus "MER34B_2p16.3b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0035"; model_cov "578"; model_pct "10.8"; chr2 rmsk exon 47689825 47690179 930 - . gene_id "MER34B_2p16.3b"; transcript_id "MER34B_2p16.3b"; locus "MER34B_2p16.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0035"; repClass "LTR"; repEnd "2551"; repFamily "ERV1"; repLeft "2153"; repStart "-2805"; chr2 rmsk exon 47690471 47690661 930 - . gene_id "MER34B_2p16.3b"; transcript_id "MER34B_2p16.3b"; locus "MER34B_2p16.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0035"; repClass "LTR"; repEnd "2152"; repFamily "ERV1"; repLeft "1972"; repStart "-3204"; ### ERVLB4_2p16.3 ### chr2 rmsk gene 47868611 47870210 . + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0160"; model_cov "1231"; model_pct "21.5"; chr2 rmsk exon 47868611 47868899 1694 + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0160"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "-1352"; repStart "4073"; chr2 rmsk exon 47868895 47869701 4539 + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0160"; repClass "LTR"; repEnd "5296"; repFamily "ERVL"; repLeft "-418"; repStart "4488"; chr2 rmsk exon 47869702 47869833 625 + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0160"; repClass "LTR"; repEnd "5635"; repFamily "ERVL"; repLeft "-79"; repStart "5501"; chr2 rmsk exon 47869979 47870150 555 + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0160"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "-132"; repStart "102"; chr2 rmsk exon 47870151 47870210 238 + . gene_id "ERVLB4_2p16.3"; transcript_id "ERVLB4_2p16.3"; locus "ERVLB4_2p16.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0160"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "494"; ### ERVLE_2p16.3a ### chr2 rmsk gene 48045871 48047835 . + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0419"; model_cov "1068"; model_pct "18.8"; chr2 rmsk exon 48045871 48046039 830 + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0419"; repClass "LTR"; repEnd "4655"; repFamily "ERVL"; repLeft "-1012"; repStart "4487"; chr2 rmsk exon 48046147 48046871 3336 + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0419"; repClass "LTR"; repEnd "5539"; repFamily "ERVL"; repLeft "-128"; repStart "4766"; chr2 rmsk exon 48047084 48047211 3336 + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0419"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5540"; chr2 rmsk exon 48047216 48047467 2363 + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0419"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "-347"; repStart "5"; chr2 rmsk exon 48047523 48047835 2363 + . gene_id "ERVLE_2p16.3a"; transcript_id "ERVLE_2p16.3a"; locus "ERVLE_2p16.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0419"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "317"; ### MER41_2p16.3a ### chr2 rmsk gene 48051040 48052882 . - . gene_id "MER41_2p16.3a"; transcript_id "MER41_2p16.3a"; locus "MER41_2p16.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0042"; model_cov "1328"; model_pct "22.3"; chr2 rmsk exon 48051040 48051589 4245 - . gene_id "MER41_2p16.3a"; transcript_id "MER41_2p16.3a"; locus "MER41_2p16.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0042"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr2 rmsk exon 48051590 48052882 9596 - . gene_id "MER41_2p16.3a"; transcript_id "MER41_2p16.3a"; locus "MER41_2p16.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0042"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4616"; repStart "-2"; ### MER41_2p16.3b ### chr2 rmsk gene 48058827 48062129 . - . gene_id "MER41_2p16.3b"; transcript_id "MER41_2p16.3b"; locus "MER41_2p16.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0043"; model_cov "2566"; model_pct "43.2"; chr2 rmsk exon 48058827 48059596 3992 - . gene_id "MER41_2p16.3b"; transcript_id "MER41_2p16.3b"; locus "MER41_2p16.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0043"; repClass "LTR"; repEnd "4743"; repFamily "ERV1"; repLeft "3993"; repStart "-1203"; chr2 rmsk exon 48059826 48060898 4302 - . gene_id "MER41_2p16.3b"; transcript_id "MER41_2p16.3b"; locus "MER41_2p16.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0043"; repClass "LTR"; repEnd "2091"; repFamily "ERV1"; repLeft "894"; repStart "-3855"; chr2 rmsk exon 48060886 48061499 4358 - . gene_id "MER41_2p16.3b"; transcript_id "MER41_2p16.3b"; locus "MER41_2p16.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0043"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "1"; repStart "-5326"; chr2 rmsk exon 48061586 48062129 4404 - . gene_id "MER41_2p16.3b"; transcript_id "MER41_2p16.3b"; locus "MER41_2p16.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0043"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_2p16.3b ### chr2 rmsk gene 48062145 48064068 . + . gene_id "ERVLE_2p16.3b"; transcript_id "ERVLE_2p16.3b"; locus "ERVLE_2p16.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0421"; model_cov "1167"; model_pct "20.6"; chr2 rmsk exon 48062145 48062599 778 + . gene_id "ERVLE_2p16.3b"; transcript_id "ERVLE_2p16.3b"; locus "ERVLE_2p16.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0421"; repClass "LTR"; repEnd "2206"; repFamily "ERVL"; repLeft "-3461"; repStart "1741"; chr2 rmsk exon 48062805 48063275 1386 + . gene_id "ERVLE_2p16.3b"; transcript_id "ERVLE_2p16.3b"; locus "ERVLE_2p16.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0421"; repClass "LTR"; repEnd "2685"; repFamily "ERVL"; repLeft "-2982"; repStart "2215"; chr2 rmsk exon 48063832 48064068 350 + . gene_id "ERVLE_2p16.3b"; transcript_id "ERVLE_2p16.3b"; locus "ERVLE_2p16.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0421"; repClass "LTR"; repEnd "5581"; repFamily "ERVL"; repLeft "-86"; repStart "5349"; ### HML3_2p16.3 ### chr2 rmsk gene 48384541 48390655 . + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0025"; model_cov "4845"; model_pct "80.5"; chr2 rmsk exon 48384541 48385019 3657 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 48385020 48385604 4383 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "581"; repFamily "ERVK"; repLeft "-5440"; repStart "1"; chr2 rmsk exon 48385603 48385650 22380 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "1038"; repFamily "ERVK"; repLeft "-4983"; repStart "1000"; chr2 rmsk exon 48385944 48388664 22380 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "3751"; repFamily "ERVK"; repLeft "-2270"; repStart "1039"; chr2 rmsk exon 48388664 48390144 10561 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4506"; chr2 rmsk exon 48390145 48390655 3936 + . gene_id "HML3_2p16.3"; transcript_id "HML3_2p16.3"; locus "HML3_2p16.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0025"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_2p16.3a ### chr2 rmsk gene 49376197 49378507 . + . gene_id "ERV316A3_2p16.3a"; transcript_id "ERV316A3_2p16.3a"; locus "ERV316A3_2p16.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0243"; model_cov "1957"; model_pct "37.4"; chr2 rmsk exon 49376197 49377931 4765 + . gene_id "ERV316A3_2p16.3a"; transcript_id "ERV316A3_2p16.3a"; locus "ERV316A3_2p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0243"; repClass "LTR"; repEnd "4425"; repFamily "ERVL"; repLeft "-801"; repStart "2700"; chr2 rmsk exon 49377910 49378140 685 + . gene_id "ERV316A3_2p16.3a"; transcript_id "ERV316A3_2p16.3a"; locus "ERV316A3_2p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0243"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "4989"; chr2 rmsk exon 49378210 49378507 536 + . gene_id "ERV316A3_2p16.3a"; transcript_id "ERV316A3_2p16.3a"; locus "ERV316A3_2p16.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0243"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-21"; repStart "127"; ### HERVL_2p16.3a ### chr2 rmsk gene 49542610 49549244 . - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0137"; model_cov "3698"; model_pct "65.4"; chr2 rmsk exon 49542610 49543060 2972 - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0137"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr2 rmsk exon 49543063 49544991 14650 - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0137"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3703"; repStart "0"; chr2 rmsk exon 49547107 49547649 4206 - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0137"; repClass "LTR"; repEnd "3716"; repFamily "ERVL"; repLeft "3173"; repStart "-1938"; chr2 rmsk exon 49547640 49548832 9188 - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0137"; repClass "LTR"; repEnd "1205"; repFamily "ERVL"; repLeft "1"; repStart "-4449"; chr2 rmsk exon 49548833 49549244 2801 - . gene_id "HERVL_2p16.3a"; transcript_id "HERVL_2p16.3a"; locus "HERVL_2p16.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0137"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_2p16.3c ### chr2 rmsk gene 49821645 49822493 . - . gene_id "ERVLE_2p16.3c"; transcript_id "ERVLE_2p16.3c"; locus "ERVLE_2p16.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0425"; model_cov "873"; model_pct "15.4"; chr2 rmsk exon 49821645 49822493 918 - . gene_id "ERVLE_2p16.3c"; transcript_id "ERVLE_2p16.3c"; locus "ERVLE_2p16.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0425"; repClass "LTR"; repEnd "5543"; repFamily "ERVL"; repLeft "4670"; repStart "-124"; ### ERVLE_2p16.3d ### chr2 rmsk gene 49828053 49831152 . - . gene_id "ERVLE_2p16.3d"; transcript_id "ERVLE_2p16.3d"; locus "ERVLE_2p16.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0426"; model_cov "2496"; model_pct "44.0"; chr2 rmsk exon 49828053 49828805 1086 - . gene_id "ERVLE_2p16.3d"; transcript_id "ERVLE_2p16.3d"; locus "ERVLE_2p16.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0426"; repClass "LTR"; repEnd "4201"; repFamily "ERVL"; repLeft "3391"; repStart "-1466"; chr2 rmsk exon 49828995 49830432 1792 - . gene_id "ERVLE_2p16.3d"; transcript_id "ERVLE_2p16.3d"; locus "ERVLE_2p16.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0426"; repClass "LTR"; repEnd "3228"; repFamily "ERVL"; repLeft "1798"; repStart "-2439"; chr2 rmsk exon 49830906 49831152 312 - . gene_id "ERVLE_2p16.3d"; transcript_id "ERVLE_2p16.3d"; locus "ERVLE_2p16.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0426"; repClass "LTR"; repEnd "1448"; repFamily "ERVL"; repLeft "1192"; repStart "-4219"; ### ERVLE_2p16.3e ### chr2 rmsk gene 49856316 49859036 . + . gene_id "ERVLE_2p16.3e"; transcript_id "ERVLE_2p16.3e"; locus "ERVLE_2p16.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0427"; model_cov "2453"; model_pct "43.3"; chr2 rmsk exon 49856316 49856814 3694 + . gene_id "ERVLE_2p16.3e"; transcript_id "ERVLE_2p16.3e"; locus "ERVLE_2p16.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0427"; repClass "LTR"; repEnd "1475"; repFamily "ERVL"; repLeft "-4192"; repStart "954"; chr2 rmsk exon 49857117 49858641 3694 + . gene_id "ERVLE_2p16.3e"; transcript_id "ERVLE_2p16.3e"; locus "ERVLE_2p16.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0427"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2640"; repStart "1476"; chr2 rmsk exon 49858663 49859036 575 + . gene_id "ERVLE_2p16.3e"; transcript_id "ERVLE_2p16.3e"; locus "ERVLE_2p16.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0427"; repClass "LTR"; repEnd "3482"; repFamily "ERVL"; repLeft "-2185"; repStart "3101"; ### HUERSP1_2p16.3 ### chr2 rmsk gene 49877002 49878606 . + . gene_id "HUERSP1_2p16.3"; transcript_id "HUERSP1_2p16.3"; locus "HUERSP1_2p16.3"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0022"; model_cov "747"; model_pct "11.9"; chr2 rmsk exon 49877002 49877289 3122 + . gene_id "HUERSP1_2p16.3"; transcript_id "HUERSP1_2p16.3"; locus "HUERSP1_2p16.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0022"; repClass "LTR"; repEnd "5828"; repFamily "ERV1"; repLeft "-435"; repStart "5515"; chr2 rmsk exon 49877353 49877748 3122 + . gene_id "HUERSP1_2p16.3"; transcript_id "HUERSP1_2p16.3"; locus "HUERSP1_2p16.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0022"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5829"; chr2 rmsk exon 49877749 49877973 3121 + . gene_id "HUERSP1_2p16.3"; transcript_id "HUERSP1_2p16.3"; locus "HUERSP1_2p16.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0022"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "-460"; repStart "1"; chr2 rmsk exon 49878273 49878606 3121 + . gene_id "HUERSP1_2p16.3"; transcript_id "HUERSP1_2p16.3"; locus "HUERSP1_2p16.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0022"; repClass "LTR"; repEnd "532"; repFamily "ERV1"; repLeft "-159"; repStart "232"; ### HERVL_2p16.3b ### chr2 rmsk gene 51120766 51122489 . + . gene_id "HERVL_2p16.3b"; transcript_id "HERVL_2p16.3b"; locus "HERVL_2p16.3b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0138"; model_cov "1716"; model_pct "30.4"; chr2 rmsk exon 51120766 51122489 10925 + . gene_id "HERVL_2p16.3b"; transcript_id "HERVL_2p16.3b"; locus "HERVL_2p16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0138"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "-875"; repStart "3063"; ### ERV316A3_2p16.3b ### chr2 rmsk gene 51225593 51229897 . - . gene_id "ERV316A3_2p16.3b"; transcript_id "ERV316A3_2p16.3b"; locus "ERV316A3_2p16.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0244"; model_cov "3244"; model_pct "62.1"; chr2 rmsk exon 51225593 51225757 313 - . gene_id "ERV316A3_2p16.3b"; transcript_id "ERV316A3_2p16.3b"; locus "ERV316A3_2p16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0244"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "3238"; repStart "-1799"; chr2 rmsk exon 51226119 51228742 4477 - . gene_id "ERV316A3_2p16.3b"; transcript_id "ERV316A3_2p16.3b"; locus "ERV316A3_2p16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0244"; repClass "LTR"; repEnd "3082"; repFamily "ERVL"; repLeft "433"; repStart "-2144"; chr2 rmsk exon 51229049 51229419 4477 - . gene_id "ERV316A3_2p16.3b"; transcript_id "ERV316A3_2p16.3b"; locus "ERV316A3_2p16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0244"; repClass "LTR"; repEnd "685"; repFamily "ERVL"; repLeft "279"; repStart "-4541"; chr2 rmsk exon 51229473 51229897 1035 - . gene_id "ERV316A3_2p16.3b"; transcript_id "ERV316A3_2p16.3b"; locus "ERV316A3_2p16.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0244"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "6"; repStart "-8"; ### ERVL_2p16.3 ### chr2 rmsk gene 51385643 51387388 . - . gene_id "ERVL_2p16.3"; transcript_id "ERVL_2p16.3"; locus "ERVL_2p16.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0035"; model_cov "1323"; model_pct "23.0"; chr2 rmsk exon 51385643 51386109 1764 - . gene_id "ERVL_2p16.3"; transcript_id "ERVL_2p16.3"; locus "ERVL_2p16.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0035"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-46"; repStart "-8"; chr2 rmsk exon 51386110 51387388 7491 - . gene_id "ERVL_2p16.3"; transcript_id "ERVL_2p16.3"; locus "ERVL_2p16.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0035"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4434"; repStart "0"; ### MER34B_2p16.3c ### chr2 rmsk gene 51448938 51449916 . + . gene_id "MER34B_2p16.3c"; transcript_id "MER34B_2p16.3c"; locus "MER34B_2p16.3c"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0036"; model_cov "1036"; model_pct "19.3"; chr2 rmsk exon 51448938 51449916 2921 + . gene_id "MER34B_2p16.3c"; transcript_id "MER34B_2p16.3c"; locus "MER34B_2p16.3c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0036"; repClass "LTR"; repEnd "5074"; repFamily "ERV1"; repLeft "-282"; repStart "4038"; ### HERVL_2p16.3c ### chr2 rmsk gene 51611796 51614555 . - . gene_id "HERVL_2p16.3c"; transcript_id "HERVL_2p16.3c"; locus "HERVL_2p16.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0139"; model_cov "2364"; model_pct "41.8"; chr2 rmsk exon 51611796 51612230 2964 - . gene_id "HERVL_2p16.3c"; transcript_id "HERVL_2p16.3c"; locus "HERVL_2p16.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0139"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr2 rmsk exon 51612231 51612590 2733 - . gene_id "HERVL_2p16.3c"; transcript_id "HERVL_2p16.3c"; locus "HERVL_2p16.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0139"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5293"; repStart "0"; chr2 rmsk exon 51612592 51614555 14745 - . gene_id "HERVL_2p16.3c"; transcript_id "HERVL_2p16.3c"; locus "HERVL_2p16.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0139"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "491"; repStart "-3160"; ### ERVLE_2p16.3f ### chr2 rmsk gene 51654213 51655092 . + . gene_id "ERVLE_2p16.3f"; transcript_id "ERVLE_2p16.3f"; locus "ERVLE_2p16.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0428"; model_cov "867"; model_pct "15.3"; chr2 rmsk exon 51654213 51654605 692 + . gene_id "ERVLE_2p16.3f"; transcript_id "ERVLE_2p16.3f"; locus "ERVLE_2p16.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0428"; repClass "LTR"; repEnd "3938"; repFamily "ERVL"; repLeft "-1729"; repStart "3501"; chr2 rmsk exon 51654658 51655092 850 + . gene_id "ERVLE_2p16.3f"; transcript_id "ERVLE_2p16.3f"; locus "ERVLE_2p16.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0428"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "-1148"; repStart "4089"; ### ERVLE_2p16.3g ### chr2 rmsk gene 51919928 51922126 . - . gene_id "ERVLE_2p16.3g"; transcript_id "ERVLE_2p16.3g"; locus "ERVLE_2p16.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0429"; model_cov "2247"; model_pct "39.7"; chr2 rmsk exon 51919928 51922126 5801 - . gene_id "ERVLE_2p16.3g"; transcript_id "ERVLE_2p16.3g"; locus "ERVLE_2p16.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0429"; repClass "LTR"; repEnd "2819"; repFamily "ERVL"; repLeft "572"; repStart "-2848"; ### HERVL_2p16.3d ### chr2 rmsk gene 51946369 51948478 . - . gene_id "HERVL_2p16.3d"; transcript_id "HERVL_2p16.3d"; locus "HERVL_2p16.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0140"; model_cov "1566"; model_pct "27.7"; chr2 rmsk exon 51946369 51946923 1990 - . gene_id "HERVL_2p16.3d"; transcript_id "HERVL_2p16.3d"; locus "HERVL_2p16.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0140"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr2 rmsk exon 51946924 51948478 11045 - . gene_id "HERVL_2p16.3d"; transcript_id "HERVL_2p16.3d"; locus "HERVL_2p16.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0140"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4088"; repStart "0"; ### HERVH_2p16.3b ### chr2 rmsk gene 52022984 52027600 . - . gene_id "HERVH_2p16.3b"; transcript_id "HERVH_2p16.3b"; locus "HERVH_2p16.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0128"; model_cov "4448"; model_pct "57.7"; chr2 rmsk exon 52022984 52023585 3989 - . gene_id "HERVH_2p16.3b"; transcript_id "HERVH_2p16.3b"; locus "HERVH_2p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0128"; repClass "LTR"; repEnd "5090"; repFamily "ERV1"; repLeft "4488"; repStart "-2623"; chr2 rmsk exon 52023589 52024442 5869 - . gene_id "HERVH_2p16.3b"; transcript_id "HERVH_2p16.3b"; locus "HERVH_2p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0128"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3140"; repStart "-3721"; chr2 rmsk exon 52024422 52027184 14156 - . gene_id "HERVH_2p16.3b"; transcript_id "HERVH_2p16.3b"; locus "HERVH_2p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0128"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr2 rmsk exon 52027191 52027600 2847 - . gene_id "HERVH_2p16.3b"; transcript_id "HERVH_2p16.3b"; locus "HERVH_2p16.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0128"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_2p16.3 ### chr2 rmsk gene 52127840 52129514 . + . gene_id "MER4_2p16.3"; transcript_id "MER4_2p16.3"; locus "MER4_2p16.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0080"; model_cov "1693"; model_pct "25.7"; chr2 rmsk exon 52127840 52128491 4288 + . gene_id "MER4_2p16.3"; transcript_id "MER4_2p16.3"; locus "MER4_2p16.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0080"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "34"; chr2 rmsk exon 52128513 52128772 1234 + . gene_id "MER4_2p16.3"; transcript_id "MER4_2p16.3"; locus "MER4_2p16.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0080"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "-5574"; repStart "764"; chr2 rmsk exon 52128774 52129514 4352 + . gene_id "MER4_2p16.3"; transcript_id "MER4_2p16.3"; locus "MER4_2p16.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0080"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "-4054"; repStart "1764"; ### MER41_2p16.3c ### chr2 rmsk gene 52129538 52131381 . + . gene_id "MER41_2p16.3c"; transcript_id "MER41_2p16.3c"; locus "MER41_2p16.3c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0044"; model_cov "1840"; model_pct "30.9"; chr2 rmsk exon 52129538 52130983 8968 + . gene_id "MER41_2p16.3c"; transcript_id "MER41_2p16.3c"; locus "MER41_2p16.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0044"; repClass "LTR"; repEnd "5361"; repFamily "ERV1"; repLeft "-585"; repStart "3881"; chr2 rmsk exon 52131036 52131381 2271 + . gene_id "MER41_2p16.3c"; transcript_id "MER41_2p16.3c"; locus "MER41_2p16.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0044"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "-5"; repStart "5581"; ### PABLA_2p16.3a ### chr2 rmsk gene 52263746 52267924 . + . gene_id "PABLA_2p16.3a"; transcript_id "PABLA_2p16.3a"; locus "PABLA_2p16.3a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0013"; model_cov "2765"; model_pct "55.1"; chr2 rmsk exon 52263746 52264380 4490 + . gene_id "PABLA_2p16.3a"; transcript_id "PABLA_2p16.3a"; locus "PABLA_2p16.3a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0013"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 52264381 52265977 5682 + . gene_id "PABLA_2p16.3a"; transcript_id "PABLA_2p16.3a"; locus "PABLA_2p16.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0013"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-3366"; repStart "1"; chr2 rmsk exon 52266178 52267440 6744 + . gene_id "PABLA_2p16.3a"; transcript_id "PABLA_2p16.3a"; locus "PABLA_2p16.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0013"; repClass "LTR"; repEnd "3339"; repFamily "ERV1"; repLeft "-1676"; repStart "2400"; chr2 rmsk exon 52267743 52267924 6744 + . gene_id "PABLA_2p16.3a"; transcript_id "PABLA_2p16.3a"; locus "PABLA_2p16.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0013"; repClass "LTR"; repEnd "3518"; repFamily "ERV1"; repLeft "-1497"; repStart "3340"; ### ERVLE_2p16.3h ### chr2 rmsk gene 52267977 52269563 . + . gene_id "ERVLE_2p16.3h"; transcript_id "ERVLE_2p16.3h"; locus "ERVLE_2p16.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0430"; model_cov "1512"; model_pct "26.7"; chr2 rmsk exon 52267977 52268800 1922 + . gene_id "ERVLE_2p16.3h"; transcript_id "ERVLE_2p16.3h"; locus "ERVLE_2p16.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0430"; repClass "LTR"; repEnd "3107"; repFamily "ERVL"; repLeft "-2560"; repStart "2281"; chr2 rmsk exon 52268873 52269563 1859 + . gene_id "ERVLE_2p16.3h"; transcript_id "ERVLE_2p16.3h"; locus "ERVLE_2p16.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0430"; repClass "LTR"; repEnd "4181"; repFamily "ERVL"; repLeft "-1486"; repStart "3495"; ### PABLA_2p16.3b ### chr2 rmsk gene 52287346 52290632 . - . gene_id "PABLA_2p16.3b"; transcript_id "PABLA_2p16.3b"; locus "PABLA_2p16.3b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0014"; model_cov "2773"; model_pct "55.3"; chr2 rmsk exon 52287346 52288003 4965 - . gene_id "PABLA_2p16.3b"; transcript_id "PABLA_2p16.3b"; locus "PABLA_2p16.3b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0014"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr2 rmsk exon 52288005 52289661 12394 - . gene_id "PABLA_2p16.3b"; transcript_id "PABLA_2p16.3b"; locus "PABLA_2p16.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0014"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "3341"; repStart "0"; chr2 rmsk exon 52289656 52290632 8848 - . gene_id "PABLA_2p16.3b"; transcript_id "PABLA_2p16.3b"; locus "PABLA_2p16.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0014"; repClass "LTR"; repEnd "2844"; repFamily "ERV1"; repLeft "1745"; repStart "-2171"; ### PABLA_2p16.3c ### chr2 rmsk gene 52290797 52292090 . - . gene_id "PABLA_2p16.3c"; transcript_id "PABLA_2p16.3c"; locus "PABLA_2p16.3c"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0015"; model_cov "1200"; model_pct "23.9"; chr2 rmsk exon 52290797 52291318 8848 - . gene_id "PABLA_2p16.3c"; transcript_id "PABLA_2p16.3c"; locus "PABLA_2p16.3c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0015"; repClass "LTR"; repEnd "2844"; repFamily "ERV1"; repLeft "2255"; repStart "-2171"; chr2 rmsk exon 52291315 52291939 4316 - . gene_id "PABLA_2p16.3c"; transcript_id "PABLA_2p16.3c"; locus "PABLA_2p16.3c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0015"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "288"; repStart "-4116"; chr2 rmsk exon 52291940 52292090 1104 - . gene_id "PABLA_2p16.3c"; transcript_id "PABLA_2p16.3c"; locus "PABLA_2p16.3c"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0015"; repClass "LTR"; repEnd "151"; repFamily "ERV1"; repLeft "1"; repStart "-509"; ### HERVE_2p16.3 ### chr2 rmsk gene 52431073 52437869 . + . gene_id "HERVE_2p16.3"; transcript_id "HERVE_2p16.3"; locus "HERVE_2p16.3"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0005"; model_cov "6151"; model_pct "78.7"; chr2 rmsk exon 52431073 52431284 1246 + . gene_id "HERVE_2p16.3"; transcript_id "HERVE_2p16.3"; locus "HERVE_2p16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0005"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "288"; chr2 rmsk exon 52431285 52431658 2238 + . gene_id "HERVE_2p16.3"; transcript_id "HERVE_2p16.3"; locus "HERVE_2p16.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0005"; repClass "LTR"; repEnd "347"; repFamily "ERV1"; repLeft "-7466"; repStart "-33"; chr2 rmsk exon 52431710 52437468 34163 + . gene_id "HERVE_2p16.3"; transcript_id "HERVE_2p16.3"; locus "HERVE_2p16.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0005"; repClass "LTR"; repEnd "6238"; repFamily "ERV1"; repLeft "-1575"; repStart "467"; chr2 rmsk exon 52437673 52437869 1255 + . gene_id "HERVE_2p16.3"; transcript_id "HERVE_2p16.3"; locus "HERVE_2p16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0005"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "306"; ### HERVL_2p16.2 ### chr2 rmsk gene 52649482 52656060 . - . gene_id "HERVL_2p16.2"; transcript_id "HERVL_2p16.2"; locus "HERVL_2p16.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0141"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 52649482 52649925 3267 - . gene_id "HERVL_2p16.2"; transcript_id "HERVL_2p16.2"; locus "HERVL_2p16.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0141"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 52649926 52655559 42698 - . gene_id "HERVL_2p16.2"; transcript_id "HERVL_2p16.2"; locus "HERVL_2p16.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0141"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 52655560 52655593 2779 - . gene_id "HERVL_2p16.2"; transcript_id "HERVL_2p16.2"; locus "HERVL_2p16.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0141"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "416"; repStart "0"; chr2 rmsk exon 52655684 52656060 2779 - . gene_id "HERVL_2p16.2"; transcript_id "HERVL_2p16.2"; locus "HERVL_2p16.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0141"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "2"; repStart "-38"; ### ERVLE_2p16.2 ### chr2 rmsk gene 52761475 52763251 . + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0432"; model_cov "1097"; model_pct "19.4"; chr2 rmsk exon 52761475 52761540 594 + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0432"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "-2337"; repStart "3265"; chr2 rmsk exon 52762133 52762440 594 + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0432"; repClass "LTR"; repEnd "3648"; repFamily "ERVL"; repLeft "-2019"; repStart "3331"; chr2 rmsk exon 52762473 52762661 458 + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0432"; repClass "LTR"; repEnd "3995"; repFamily "ERVL"; repLeft "-1672"; repStart "3806"; chr2 rmsk exon 52762696 52762886 549 + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0432"; repClass "LTR"; repEnd "4279"; repFamily "ERVL"; repLeft "-1388"; repStart "4088"; chr2 rmsk exon 52762942 52763251 801 + . gene_id "ERVLE_2p16.2"; transcript_id "ERVLE_2p16.2"; locus "ERVLE_2p16.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0432"; repClass "LTR"; repEnd "4614"; repFamily "ERVL"; repLeft "-1053"; repStart "4279"; ### ERV316A3_2p16.2 ### chr2 rmsk gene 52796745 52797736 . - . gene_id "ERV316A3_2p16.2"; transcript_id "ERV316A3_2p16.2"; locus "ERV316A3_2p16.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0245"; model_cov "1055"; model_pct "20.2"; chr2 rmsk exon 52796745 52797736 1615 - . gene_id "ERV316A3_2p16.2"; transcript_id "ERV316A3_2p16.2"; locus "ERV316A3_2p16.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0245"; repClass "LTR"; repEnd "3367"; repFamily "ERVL"; repLeft "2312"; repStart "-1859"; ### MER4B_2p16.2 ### chr2 rmsk gene 53074582 53076244 . - . gene_id "MER4B_2p16.2"; transcript_id "MER4B_2p16.2"; locus "MER4B_2p16.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0054"; model_cov "1650"; model_pct "24.4"; chr2 rmsk exon 53074582 53076244 4015 - . gene_id "MER4B_2p16.2"; transcript_id "MER4B_2p16.2"; locus "MER4B_2p16.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0054"; repClass "LTR"; repEnd "4744"; repFamily "ERV1"; repLeft "3094"; repStart "-2014"; ### HERVW_2p16.2 ### chr2 rmsk gene 53756643 53761425 . + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0036"; model_cov "3686"; model_pct "42.7"; chr2 rmsk exon 53756643 53757097 2840 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "260"; chr2 rmsk exon 53757098 53757809 5686 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-7919"; repStart "1"; chr2 rmsk exon 53757976 53758267 1998 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "1058"; repFamily "ERV1"; repLeft "-7568"; repStart "784"; chr2 rmsk exon 53758405 53758889 3797 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "1537"; chr2 rmsk exon 53758875 53760194 10542 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2430"; chr2 rmsk exon 53760174 53760786 4957 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5405"; chr2 rmsk exon 53760808 53761100 2367 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 53761101 53761425 2288 + . gene_id "HERVW_2p16.2"; transcript_id "HERVW_2p16.2"; locus "HERVW_2p16.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0036"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### HERVH_2p16.2 ### chr2 rmsk gene 54506902 54509542 . - . gene_id "HERVH_2p16.2"; transcript_id "HERVH_2p16.2"; locus "HERVH_2p16.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0129"; model_cov "2575"; model_pct "33.4"; chr2 rmsk exon 54506902 54507295 1916 - . gene_id "HERVH_2p16.2"; transcript_id "HERVH_2p16.2"; locus "HERVH_2p16.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0129"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-6"; repStart "-39"; chr2 rmsk exon 54507296 54507850 3470 - . gene_id "HERVH_2p16.2"; transcript_id "HERVH_2p16.2"; locus "HERVH_2p16.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0129"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr2 rmsk exon 54507844 54508101 1625 - . gene_id "HERVH_2p16.2"; transcript_id "HERVH_2p16.2"; locus "HERVH_2p16.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0129"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5759"; repStart "-1697"; chr2 rmsk exon 54508108 54509542 6256 - . gene_id "HERVH_2p16.2"; transcript_id "HERVH_2p16.2"; locus "HERVH_2p16.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0129"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "4557"; repStart "-1394"; ### ERV316A3_2p16.1a ### chr2 rmsk gene 55625410 55626717 . + . gene_id "ERV316A3_2p16.1a"; transcript_id "ERV316A3_2p16.1a"; locus "ERV316A3_2p16.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0247"; model_cov "818"; model_pct "15.7"; chr2 rmsk exon 55625410 55625864 2284 + . gene_id "ERV316A3_2p16.1a"; transcript_id "ERV316A3_2p16.1a"; locus "ERV316A3_2p16.1a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0247"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "5"; chr2 rmsk exon 55625961 55626430 1373 + . gene_id "ERV316A3_2p16.1a"; transcript_id "ERV316A3_2p16.1a"; locus "ERV316A3_2p16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0247"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "-4574"; repStart "127"; chr2 rmsk exon 55626456 55626717 868 + . gene_id "ERV316A3_2p16.1a"; transcript_id "ERV316A3_2p16.1a"; locus "ERV316A3_2p16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0247"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "-3983"; repStart "950"; ### MER101_2p16.1 ### chr2 rmsk gene 55846177 55849663 . - . gene_id "MER101_2p16.1"; transcript_id "MER101_2p16.1"; locus "MER101_2p16.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0050"; model_cov "3751"; model_pct "56.5"; chr2 rmsk exon 55846177 55846973 3316 - . gene_id "MER101_2p16.1"; transcript_id "MER101_2p16.1"; locus "MER101_2p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0050"; repClass "LTR"; repEnd "4572"; repFamily "ERV1"; repLeft "3283"; repStart "-2067"; chr2 rmsk exon 55847291 55848523 4400 - . gene_id "MER101_2p16.1"; transcript_id "MER101_2p16.1"; locus "MER101_2p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0050"; repClass "LTR"; repEnd "3744"; repFamily "ERV1"; repLeft "2470"; repStart "-2895"; chr2 rmsk exon 55848651 55848834 1028 - . gene_id "MER101_2p16.1"; transcript_id "MER101_2p16.1"; locus "MER101_2p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0050"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "2585"; repStart "-3874"; chr2 rmsk exon 55848968 55849663 1512 - . gene_id "MER101_2p16.1"; transcript_id "MER101_2p16.1"; locus "MER101_2p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0050"; repClass "LTR"; repEnd "2582"; repFamily "ERV1"; repLeft "1574"; repStart "-4057"; ### ERVLB4_2p16.1a ### chr2 rmsk gene 55972226 55975858 . - . gene_id "ERVLB4_2p16.1a"; transcript_id "ERVLB4_2p16.1a"; locus "ERVLB4_2p16.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0163"; model_cov "3513"; model_pct "61.5"; chr2 rmsk exon 55972226 55972611 706 - . gene_id "ERVLB4_2p16.1a"; transcript_id "ERVLB4_2p16.1a"; locus "ERVLB4_2p16.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0163"; repClass "LTR"; repEnd "5332"; repFamily "ERVL"; repLeft "4942"; repStart "-382"; chr2 rmsk exon 55972708 55973485 4587 - . gene_id "ERVLB4_2p16.1a"; transcript_id "ERVLB4_2p16.1a"; locus "ERVLB4_2p16.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0163"; repClass "LTR"; repEnd "4507"; repFamily "ERVL"; repLeft "3701"; repStart "-1207"; chr2 rmsk exon 55973485 55975858 11488 - . gene_id "ERVLB4_2p16.1a"; transcript_id "ERVLB4_2p16.1a"; locus "ERVLB4_2p16.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0163"; repClass "LTR"; repEnd "3356"; repFamily "ERVL"; repLeft "1039"; repStart "-2358"; ### HUERSP3B_2p16.1 ### chr2 rmsk gene 56158620 56160407 . + . gene_id "HUERSP3B_2p16.1"; transcript_id "HUERSP3B_2p16.1"; locus "HUERSP3B_2p16.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0018"; model_cov "1233"; model_pct "16.6"; chr2 rmsk exon 56158620 56159831 8792 + . gene_id "HUERSP3B_2p16.1"; transcript_id "HUERSP3B_2p16.1"; locus "HUERSP3B_2p16.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0018"; repClass "LTR"; repEnd "7410"; repFamily "ERV1"; repLeft "-8"; repStart "6177"; chr2 rmsk exon 56159834 56160407 3471 + . gene_id "HUERSP3B_2p16.1"; transcript_id "HUERSP3B_2p16.1"; locus "HUERSP3B_2p16.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0018"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### ERV316A3_2p16.1b ### chr2 rmsk gene 56507653 56509259 . - . gene_id "ERV316A3_2p16.1b"; transcript_id "ERV316A3_2p16.1b"; locus "ERV316A3_2p16.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0249"; model_cov "1123"; model_pct "21.5"; chr2 rmsk exon 56507653 56508679 1416 - . gene_id "ERV316A3_2p16.1b"; transcript_id "ERV316A3_2p16.1b"; locus "ERV316A3_2p16.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0249"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "3871"; repStart "-232"; chr2 rmsk exon 56508979 56509259 841 - . gene_id "ERV316A3_2p16.1b"; transcript_id "ERV316A3_2p16.1b"; locus "ERV316A3_2p16.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0249"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "151"; repStart "0"; ### ERVLB4_2p16.1b ### chr2 rmsk gene 56532238 56534178 . - . gene_id "ERVLB4_2p16.1b"; transcript_id "ERVLB4_2p16.1b"; locus "ERVLB4_2p16.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0164"; model_cov "1719"; model_pct "30.1"; chr2 rmsk exon 56532238 56532283 363 - . gene_id "ERVLB4_2p16.1b"; transcript_id "ERVLB4_2p16.1b"; locus "ERVLB4_2p16.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0164"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "470"; repStart "0"; chr2 rmsk exon 56532284 56533986 8854 - . gene_id "ERVLB4_2p16.1b"; transcript_id "ERVLB4_2p16.1b"; locus "ERVLB4_2p16.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0164"; repClass "LTR"; repEnd "1720"; repFamily "ERVL"; repLeft "1"; repStart "-3994"; chr2 rmsk exon 56533987 56534178 978 - . gene_id "ERVLB4_2p16.1b"; transcript_id "ERVLB4_2p16.1b"; locus "ERVLB4_2p16.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0164"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "335"; repStart "0"; ### HERVL_2p16.1 ### chr2 rmsk gene 56616914 56624016 . + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0142"; model_cov "5650"; model_pct "99.9"; chr2 rmsk exon 56616914 56617326 2875 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-42"; repStart "-101"; chr2 rmsk exon 56617563 56622026 41305 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "4507"; repFamily "ERVL"; repLeft "-1147"; repStart "1"; chr2 rmsk exon 56622090 56622988 41305 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "5416"; repFamily "ERVL"; repLeft "-238"; repStart "4508"; chr2 rmsk exon 56623300 56623549 41305 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5417"; chr2 rmsk exon 56623550 56623931 3134 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-56"; repStart "1"; chr2 rmsk exon 56623966 56624016 3134 + . gene_id "HERVL_2p16.1"; transcript_id "HERVL_2p16.1"; locus "HERVL_2p16.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0142"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "398"; ### ERV316A3_2p16.1c ### chr2 rmsk gene 56639933 56641259 . - . gene_id "ERV316A3_2p16.1c"; transcript_id "ERV316A3_2p16.1c"; locus "ERV316A3_2p16.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0250"; model_cov "843"; model_pct "16.1"; chr2 rmsk exon 56639933 56640134 545 - . gene_id "ERV316A3_2p16.1c"; transcript_id "ERV316A3_2p16.1c"; locus "ERV316A3_2p16.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0250"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "243"; repStart "0"; chr2 rmsk exon 56640169 56640321 257 - . gene_id "ERV316A3_2p16.1c"; transcript_id "ERV316A3_2p16.1c"; locus "ERV316A3_2p16.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0250"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "1"; repStart "-292"; chr2 rmsk exon 56640474 56640663 685 - . gene_id "ERV316A3_2p16.1c"; transcript_id "ERV316A3_2p16.1c"; locus "ERV316A3_2p16.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0250"; repClass "LTR"; repEnd "4853"; repFamily "ERVL"; repLeft "4658"; repStart "-373"; chr2 rmsk exon 56640687 56641259 1078 - . gene_id "ERV316A3_2p16.1c"; transcript_id "ERV316A3_2p16.1c"; locus "ERV316A3_2p16.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0250"; repClass "LTR"; repEnd "4267"; repFamily "ERVL"; repLeft "3619"; repStart "-959"; ### ERV316A3_2p16.1d ### chr2 rmsk gene 56667413 56668360 . + . gene_id "ERV316A3_2p16.1d"; transcript_id "ERV316A3_2p16.1d"; locus "ERV316A3_2p16.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0251"; model_cov "627"; model_pct "12.0"; chr2 rmsk exon 56667413 56667744 514 + . gene_id "ERV316A3_2p16.1d"; transcript_id "ERV316A3_2p16.1d"; locus "ERV316A3_2p16.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0251"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-3651"; repStart "1246"; chr2 rmsk exon 56668066 56668360 514 + . gene_id "ERV316A3_2p16.1d"; transcript_id "ERV316A3_2p16.1d"; locus "ERV316A3_2p16.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0251"; repClass "LTR"; repEnd "1874"; repFamily "ERVL"; repLeft "-3352"; repStart "1576"; ### HML3_2p16.1 ### chr2 rmsk gene 56719160 56724218 . + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0026"; model_cov "4211"; model_pct "69.9"; chr2 rmsk exon 56719160 56719512 3072 + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0026"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "161"; chr2 rmsk exon 56719513 56722294 22557 + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0026"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr2 rmsk exon 56722295 56722684 3394 + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0026"; repClass "LTR"; repEnd "4112"; repFamily "ERVK"; repLeft "-1909"; repStart "3723"; chr2 rmsk exon 56722684 56723703 8076 + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0026"; repClass "LTR"; repEnd "6016"; repFamily "ERVK"; repLeft "-5"; repStart "4991"; chr2 rmsk exon 56723709 56724218 4183 + . gene_id "HML3_2p16.1"; transcript_id "HML3_2p16.1"; locus "HML3_2p16.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0026"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML5_2p16.1 ### chr2 rmsk gene 56980472 56985403 . - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0016"; model_cov "4225"; model_pct "61.8"; chr2 rmsk exon 56980472 56980748 1391 - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0016"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "207"; repStart "0"; chr2 rmsk exon 56980805 56982090 9180 - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0016"; repClass "LTR"; repEnd "5854"; repFamily "ERVK"; repLeft "4542"; repStart "-983"; chr2 rmsk exon 56982088 56984202 15607 - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0016"; repClass "LTR"; repEnd "4434"; repFamily "ERVK"; repLeft "2314"; repStart "-2403"; chr2 rmsk exon 56984186 56984935 4754 - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0016"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "1"; repStart "-6043"; chr2 rmsk exon 56984937 56985403 2273 - . gene_id "HML5_2p16.1"; transcript_id "HML5_2p16.1"; locus "HML5_2p16.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0016"; repClass "LTR"; repEnd "506"; repFamily "ERVK"; repLeft "1"; repStart "-1"; ### MER41_2p16.1 ### chr2 rmsk gene 57183287 57184556 . + . gene_id "MER41_2p16.1"; transcript_id "MER41_2p16.1"; locus "MER41_2p16.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0045"; model_cov "1269"; model_pct "21.3"; chr2 rmsk exon 57183287 57184556 5821 + . gene_id "MER41_2p16.1"; transcript_id "MER41_2p16.1"; locus "MER41_2p16.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0045"; repClass "LTR"; repEnd "4842"; repFamily "ERV1"; repLeft "-1104"; repStart "3573"; ### HERVH_2p16.1a ### chr2 rmsk gene 57192263 57198696 . + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; category "unknown"; intModel "HERVH-int"; locid "HERVH-int_0130"; model_cov "5112"; model_pct "66.3"; chr2 rmsk exon 57192263 57192733 3948 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 57192734 57192935 1518 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "202"; repFamily "ERV1"; repLeft "-7511"; repStart "1"; chr2 rmsk exon 57193026 57193496 3948 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 57193497 57196362 15725 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 57196357 57196504 873 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 57196495 57196990 3227 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 57196993 57197655 4200 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 57197653 57197873 1336 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 57197872 57198254 2496 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 57198255 57198696 3667 + . gene_id "HERVH_2p16.1a"; transcript_id "HERVH_2p16.1a"; locus "HERVH_2p16.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0130"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_2p16.1b ### chr2 rmsk gene 57227242 57235205 . + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0131"; model_cov "5643"; model_pct "73.2"; chr2 rmsk exon 57227242 57227641 2233 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 57227645 57227697 397 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "53"; repFamily "ERV1"; repLeft "-7660"; repStart "1"; chr2 rmsk exon 57229541 57232306 14369 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "76"; chr2 rmsk exon 57232286 57232435 977 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 57232426 57232959 3307 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "4030"; repFamily "ERV1"; repLeft "-3683"; repStart "3492"; chr2 rmsk exon 57232933 57233122 1231 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr2 rmsk exon 57233119 57233706 4012 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "-1333"; repStart "5772"; chr2 rmsk exon 57233680 57234846 8078 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6529"; chr2 rmsk exon 57234847 57235205 1982 + . gene_id "HERVH_2p16.1b"; transcript_id "HERVH_2p16.1b"; locus "HERVH_2p16.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0131"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-10"; repStart "1"; ### ERVLB4_2p16.1c ### chr2 rmsk gene 57443298 57446445 . + . gene_id "ERVLB4_2p16.1c"; transcript_id "ERVLB4_2p16.1c"; locus "ERVLB4_2p16.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0165"; model_cov "2503"; model_pct "43.8"; chr2 rmsk exon 57443298 57443355 277 + . gene_id "ERVLB4_2p16.1c"; transcript_id "ERVLB4_2p16.1c"; locus "ERVLB4_2p16.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0165"; repClass "LTR"; repEnd "2443"; repFamily "ERVL"; repLeft "-3271"; repStart "2382"; chr2 rmsk exon 57443734 57445452 2057 + . gene_id "ERVLB4_2p16.1c"; transcript_id "ERVLB4_2p16.1c"; locus "ERVLB4_2p16.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0165"; repClass "LTR"; repEnd "4654"; repFamily "ERVL"; repLeft "-1060"; repStart "2675"; chr2 rmsk exon 57445850 57446123 562 + . gene_id "ERVLB4_2p16.1c"; transcript_id "ERVLB4_2p16.1c"; locus "ERVLB4_2p16.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0165"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "-779"; repStart "4659"; chr2 rmsk exon 57446258 57446445 324 + . gene_id "ERVLB4_2p16.1c"; transcript_id "ERVLB4_2p16.1c"; locus "ERVLB4_2p16.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0165"; repClass "LTR"; repEnd "5331"; repFamily "ERVL"; repLeft "-383"; repStart "5144"; ### ERV316A3_2p16.1e ### chr2 rmsk gene 57695895 57699454 . - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0252"; model_cov "2763"; model_pct "52.9"; chr2 rmsk exon 57695895 57696330 1328 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr2 rmsk exon 57696388 57697208 1783 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "4327"; repStart "-49"; chr2 rmsk exon 57697234 57697932 1626 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "2563"; repStart "-1944"; chr2 rmsk exon 57697935 57698005 281 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "2903"; repFamily "ERVL"; repLeft "2828"; repStart "-2323"; chr2 rmsk exon 57698037 57699113 1002 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "1441"; repFamily "ERVL"; repLeft "322"; repStart "-3785"; chr2 rmsk exon 57699198 57699454 834 - . gene_id "ERV316A3_2p16.1e"; transcript_id "ERV316A3_2p16.1e"; locus "ERV316A3_2p16.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0252"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "183"; repStart "-2"; ### ERVLB4_2p16.1d ### chr2 rmsk gene 58005706 58007331 . + . gene_id "ERVLB4_2p16.1d"; transcript_id "ERVLB4_2p16.1d"; locus "ERVLB4_2p16.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0166"; model_cov "1355"; model_pct "23.7"; chr2 rmsk exon 58005706 58007035 7707 + . gene_id "ERVLB4_2p16.1d"; transcript_id "ERVLB4_2p16.1d"; locus "ERVLB4_2p16.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0166"; repClass "LTR"; repEnd "1868"; repFamily "ERVL"; repLeft "-3846"; repStart "513"; chr2 rmsk exon 58007036 58007204 733 + . gene_id "ERVLB4_2p16.1d"; transcript_id "ERVLB4_2p16.1d"; locus "ERVLB4_2p16.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0166"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-65"; repStart "241"; chr2 rmsk exon 58007241 58007331 595 + . gene_id "ERVLB4_2p16.1d"; transcript_id "ERVLB4_2p16.1d"; locus "ERVLB4_2p16.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0166"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-4"; repStart "434"; ### HERVH_2p16.1c ### chr2 rmsk gene 58113432 58119130 . - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0132"; model_cov "4900"; model_pct "63.5"; chr2 rmsk exon 58113432 58113860 2516 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 58113861 58114237 2393 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 58114236 58114456 1395 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr2 rmsk exon 58114454 58115114 4226 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 58115117 58115617 3250 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 58115608 58115755 867 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 58115750 58118686 19865 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "12"; repStart "-4726"; chr2 rmsk exon 58118698 58119130 2597 - . gene_id "HERVH_2p16.1c"; transcript_id "HERVH_2p16.1c"; locus "HERVH_2p16.1c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0132"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_2p16.1a ### chr2 rmsk gene 58265223 58268227 . + . gene_id "ERVLE_2p16.1a"; transcript_id "ERVLE_2p16.1a"; locus "ERVLE_2p16.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0434"; model_cov "1936"; model_pct "34.2"; chr2 rmsk exon 58265223 58266130 2003 + . gene_id "ERVLE_2p16.1a"; transcript_id "ERVLE_2p16.1a"; locus "ERVLE_2p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0434"; repClass "LTR"; repEnd "2224"; repFamily "ERVL"; repLeft "-3443"; repStart "1292"; chr2 rmsk exon 58266194 58266587 673 + . gene_id "ERVLE_2p16.1a"; transcript_id "ERVLE_2p16.1a"; locus "ERVLE_2p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0434"; repClass "LTR"; repEnd "2735"; repFamily "ERVL"; repLeft "-2932"; repStart "2328"; chr2 rmsk exon 58266691 58266968 416 + . gene_id "ERVLE_2p16.1a"; transcript_id "ERVLE_2p16.1a"; locus "ERVLE_2p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0434"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "-2378"; repStart "2992"; chr2 rmsk exon 58267934 58268227 401 + . gene_id "ERVLE_2p16.1a"; transcript_id "ERVLE_2p16.1a"; locus "ERVLE_2p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0434"; repClass "LTR"; repEnd "3988"; repFamily "ERVL"; repLeft "-1679"; repStart "3688"; ### HERVH_2p16.1d ### chr2 rmsk gene 58314169 58319388 . + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0133"; model_cov "4487"; model_pct "58.2"; chr2 rmsk exon 58314169 58314565 2464 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 58314568 58315719 7217 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "1206"; repFamily "ERV1"; repLeft "-6507"; repStart "1"; chr2 rmsk exon 58315731 58317106 9266 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1630"; chr2 rmsk exon 58317101 58317245 838 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 58317236 58317735 3431 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 58317738 58318400 4376 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 58318398 58318619 1360 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 58318618 58318996 2330 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 58318997 58319388 2482 + . gene_id "HERVH_2p16.1d"; transcript_id "HERVH_2p16.1d"; locus "HERVH_2p16.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0133"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_2p16.1b ### chr2 rmsk gene 58388120 58390835 . + . gene_id "ERVLE_2p16.1b"; transcript_id "ERVLE_2p16.1b"; locus "ERVLE_2p16.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0435"; model_cov "2135"; model_pct "37.7"; chr2 rmsk exon 58388120 58389838 4000 + . gene_id "ERVLE_2p16.1b"; transcript_id "ERVLE_2p16.1b"; locus "ERVLE_2p16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0435"; repClass "LTR"; repEnd "5305"; repFamily "ERVL"; repLeft "-362"; repStart "3356"; chr2 rmsk exon 58390155 58390345 643 + . gene_id "ERVLE_2p16.1b"; transcript_id "ERVLE_2p16.1b"; locus "ERVLE_2p16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0435"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5480"; chr2 rmsk exon 58390346 58390835 865 + . gene_id "ERVLE_2p16.1b"; transcript_id "ERVLE_2p16.1b"; locus "ERVLE_2p16.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0435"; repClass "LTR"; repEnd "622"; repFamily "ERVL"; repLeft "-41"; repStart "3"; ### HML4_2p16.1 ### chr2 rmsk gene 59172957 59175135 . + . gene_id "HML4_2p16.1"; transcript_id "HML4_2p16.1"; locus "HML4_2p16.1"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0006"; model_cov "1349"; model_pct "16.6"; chr2 rmsk exon 59172957 59173771 7949 + . gene_id "HML4_2p16.1"; transcript_id "HML4_2p16.1"; locus "HML4_2p16.1"; repName "LTR13A"; geneRegion "ltr"; locid "HERVK13-int_0006"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "0"; repStart "167"; chr2 rmsk exon 59173772 59175135 8704 + . gene_id "HML4_2p16.1"; transcript_id "HML4_2p16.1"; locus "HML4_2p16.1"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0006"; repClass "LTR"; repEnd "1350"; repFamily "ERVK"; repLeft "-6766"; repStart "1"; ### HERVH_2p16.1e ### chr2 rmsk gene 60417435 60422485 . + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0134"; model_cov "4028"; model_pct "52.2"; chr2 rmsk exon 60417435 60417833 2718 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "23"; chr2 rmsk exon 60417836 60421005 16721 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 60421000 60421147 901 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 60421138 60421579 3107 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "-3783"; repStart "3492"; chr2 rmsk exon 60421585 60421646 396 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5754"; chr2 rmsk exon 60421647 60422015 2370 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 60422016 60422485 4196 + . gene_id "HERVH_2p16.1e"; transcript_id "HERVH_2p16.1e"; locus "HERVH_2p16.1e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0134"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_2p16.1 ### chr2 rmsk gene 60743759 60746878 . - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0015"; model_cov "1951"; model_pct "32.3"; chr2 rmsk exon 60743759 60744311 3120 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr2 rmsk exon 60744487 60745130 3826 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2826"; repStart "-2556"; chr2 rmsk exon 60745174 60745214 270 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2718"; repStart "-3289"; chr2 rmsk exon 60745212 60745437 676 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr2 rmsk exon 60745437 60745782 1089 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1398"; repStart "-4237"; chr2 rmsk exon 60745793 60745838 314 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "962"; repFamily "ERVL"; repLeft "917"; repStart "-5085"; chr2 rmsk exon 60745834 60746010 678 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "493"; repStart "-5381"; chr2 rmsk exon 60745996 60746280 1553 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "19"; repStart "-5745"; chr2 rmsk exon 60746301 60746878 3500 - . gene_id "HERVL18_2p16.1"; transcript_id "HERVL18_2p16.1"; locus "HERVL18_2p16.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0015"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### MER34B_2p15 ### chr2 rmsk gene 61654211 61655558 . - . gene_id "MER34B_2p15"; transcript_id "MER34B_2p15"; locus "MER34B_2p15"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0037"; model_cov "539"; model_pct "10.1"; chr2 rmsk exon 61654211 61654392 594 - . gene_id "MER34B_2p15"; transcript_id "MER34B_2p15"; locus "MER34B_2p15"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0037"; repClass "LTR"; repEnd "-2130"; repFamily "ERV1"; repLeft "-2329"; repStart "-7486"; chr2 rmsk exon 61654363 61654697 1042 - . gene_id "MER34B_2p15"; transcript_id "MER34B_2p15"; locus "MER34B_2p15"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0037"; repClass "LTR"; repEnd "383"; repFamily "ERV1"; repLeft "43"; repStart "-4973"; chr2 rmsk exon 61654734 61654898 2468 - . gene_id "MER34B_2p15"; transcript_id "MER34B_2p15"; locus "MER34B_2p15"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0037"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "371"; repStart "0"; chr2 rmsk exon 61655226 61655558 2468 - . gene_id "MER34B_2p15"; transcript_id "MER34B_2p15"; locus "MER34B_2p15"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0037"; repClass "LTR"; repEnd "370"; repFamily "ERV1"; repLeft "32"; repStart "-172"; ### ERV316A3_2p15a ### chr2 rmsk gene 61717182 61719545 . - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0254"; model_cov "1278"; model_pct "24.5"; chr2 rmsk exon 61717182 61717366 934 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "3"; repStart "-240"; chr2 rmsk exon 61717514 61717912 1597 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "4287"; repFamily "ERVL"; repLeft "3874"; repStart "-939"; chr2 rmsk exon 61717911 61718032 369 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "3477"; repFamily "ERVL"; repLeft "3344"; repStart "-1749"; chr2 rmsk exon 61718032 61718499 1448 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "286"; repStart "-4416"; chr2 rmsk exon 61718955 61719166 1448 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "77"; repStart "-4941"; chr2 rmsk exon 61719269 61719545 842 - . gene_id "ERV316A3_2p15a"; transcript_id "ERV316A3_2p15a"; locus "ERV316A3_2p15a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0254"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "78"; repStart "-11"; ### ERVL_2p15 ### chr2 rmsk gene 61863375 61865287 . + . gene_id "ERVL_2p15"; transcript_id "ERVL_2p15"; locus "ERVL_2p15"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0036"; model_cov "1139"; model_pct "19.8"; chr2 rmsk exon 61863375 61863441 5329 + . gene_id "ERVL_2p15"; transcript_id "ERVL_2p15"; locus "ERVL_2p15"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0036"; repClass "LTR"; repEnd "4618"; repFamily "ERVL"; repLeft "-1139"; repStart "4552"; chr2 rmsk exon 61863723 61864768 5329 + . gene_id "ERVL_2p15"; transcript_id "ERVL_2p15"; locus "ERVL_2p15"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0036"; repClass "LTR"; repEnd "5722"; repFamily "ERVL"; repLeft "-35"; repStart "4683"; chr2 rmsk exon 61865071 61865106 4824 + . gene_id "ERVL_2p15"; transcript_id "ERVL_2p15"; locus "ERVL_2p15"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0036"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5723"; chr2 rmsk exon 61865118 61865287 851 + . gene_id "ERVL_2p15"; transcript_id "ERVL_2p15"; locus "ERVL_2p15"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0036"; repClass "LTR"; repEnd "202"; repFamily "ERVL"; repLeft "-354"; repStart "17"; ### HERVFH21_2p15 ### chr2 rmsk gene 61924294 61925700 . - . gene_id "HERVFH21_2p15"; transcript_id "HERVFH21_2p15"; locus "HERVFH21_2p15"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0005"; model_cov "988"; model_pct "15.1"; chr2 rmsk exon 61924294 61925260 4095 - . gene_id "HERVFH21_2p15"; transcript_id "HERVFH21_2p15"; locus "HERVFH21_2p15"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0005"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "1"; repStart "-5540"; chr2 rmsk exon 61925261 61925700 3200 - . gene_id "HERVFH21_2p15"; transcript_id "HERVFH21_2p15"; locus "HERVFH21_2p15"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0005"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_2p15 ### chr2 rmsk gene 61936783 61944535 . - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0055"; model_cov "4358"; model_pct "64.5"; chr2 rmsk exon 61936783 61937341 2823 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "15"; repStart "0"; chr2 rmsk exon 61937342 61938050 12381 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "6754"; repFamily "ERV1"; repLeft "5943"; repStart "-4"; chr2 rmsk exon 61938749 61939171 12381 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "5513"; repStart "-816"; chr2 rmsk exon 61939492 61940644 12381 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "5512"; repFamily "ERV1"; repLeft "4321"; repStart "-1246"; chr2 rmsk exon 61940649 61940688 4700 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "4154"; repStart "-2572"; chr2 rmsk exon 61940987 61941044 4700 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "4153"; repFamily "ERV1"; repLeft "4108"; repStart "-2605"; chr2 rmsk exon 61941328 61941996 4700 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "4107"; repFamily "ERV1"; repLeft "3421"; repStart "-2651"; chr2 rmsk exon 61941984 61942106 703 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "3094"; repFamily "ERV1"; repLeft "2974"; repStart "-3664"; chr2 rmsk exon 61942839 61943552 6050 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "1255"; repFamily "ERV1"; repLeft "562"; repStart "-5503"; chr2 rmsk exon 61943863 61944169 5544 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "260"; repStart "-6197"; chr2 rmsk exon 61944468 61944535 5544 - . gene_id "MER4B_2p15"; transcript_id "MER4B_2p15"; locus "MER4B_2p15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0055"; repClass "LTR"; repEnd "259"; repFamily "ERV1"; repLeft "209"; repStart "-6499"; ### MER4_2p15 ### chr2 rmsk gene 61944555 61946123 . - . gene_id "MER4_2p15"; transcript_id "MER4_2p15"; locus "MER4_2p15"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0081"; model_cov "887"; model_pct "13.4"; chr2 rmsk exon 61944555 61944899 969 - . gene_id "MER4_2p15"; transcript_id "MER4_2p15"; locus "MER4_2p15"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0081"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2132"; repStart "-4107"; chr2 rmsk exon 61944930 61945033 385 - . gene_id "MER4_2p15"; transcript_id "MER4_2p15"; locus "MER4_2p15"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0081"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-721"; repStart "-7237"; chr2 rmsk exon 61945096 61945542 2032 - . gene_id "MER4_2p15"; transcript_id "MER4_2p15"; locus "MER4_2p15"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0081"; repClass "LTR"; repEnd "-1225"; repFamily "ERV1"; repLeft "-1671"; repStart "-7823"; chr2 rmsk exon 61945543 61946123 3361 - . gene_id "MER4_2p15"; transcript_id "MER4_2p15"; locus "MER4_2p15"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0081"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL32_2p15a ### chr2 rmsk gene 63297035 63299755 . - . gene_id "HERVL32_2p15a"; transcript_id "HERVL32_2p15a"; locus "HERVL32_2p15a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0004"; model_cov "896"; model_pct "26.2"; chr2 rmsk exon 63297035 63297445 2171 - . gene_id "HERVL32_2p15a"; transcript_id "HERVL32_2p15a"; locus "HERVL32_2p15a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0004"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 63297448 63297651 660 - . gene_id "HERVL32_2p15a"; transcript_id "HERVL32_2p15a"; locus "HERVL32_2p15a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0004"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "3215"; repStart "0"; chr2 rmsk exon 63299013 63299755 1095 - . gene_id "HERVL32_2p15a"; transcript_id "HERVL32_2p15a"; locus "HERVL32_2p15a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0004"; repClass "LTR"; repEnd "1746"; repFamily "ERVL"; repLeft "1053"; repStart "-1672"; ### HUERSP3B_2p15 ### chr2 rmsk gene 63299756 63302947 . + . gene_id "HUERSP3B_2p15"; transcript_id "HUERSP3B_2p15"; locus "HUERSP3B_2p15"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0019"; model_cov "2470"; model_pct "33.3"; chr2 rmsk exon 63299756 63300305 3544 + . gene_id "HUERSP3B_2p15"; transcript_id "HUERSP3B_2p15"; locus "HUERSP3B_2p15"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0019"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 63300317 63300416 602 + . gene_id "HUERSP3B_2p15"; transcript_id "HUERSP3B_2p15"; locus "HUERSP3B_2p15"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0019"; repClass "LTR"; repEnd "-1390"; repFamily "ERV1"; repLeft "-8808"; repStart "-1490"; chr2 rmsk exon 63300408 63302947 11792 + . gene_id "HUERSP3B_2p15"; transcript_id "HUERSP3B_2p15"; locus "HUERSP3B_2p15"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0019"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "272"; ### HERVL32_2p15b ### chr2 rmsk gene 63303116 63303770 . - . gene_id "HERVL32_2p15b"; transcript_id "HERVL32_2p15b"; locus "HERVL32_2p15b"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0005"; model_cov "675"; model_pct "19.7"; chr2 rmsk exon 63303116 63303770 2459 - . gene_id "HERVL32_2p15b"; transcript_id "HERVL32_2p15b"; locus "HERVL32_2p15b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0005"; repClass "LTR"; repEnd "2855"; repFamily "ERVL"; repLeft "2180"; repStart "-563"; ### ERV316A3_2p15b ### chr2 rmsk gene 63345145 63346595 . + . gene_id "ERV316A3_2p15b"; transcript_id "ERV316A3_2p15b"; locus "ERV316A3_2p15b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0257"; model_cov "797"; model_pct "15.3"; chr2 rmsk exon 63345145 63345403 717 + . gene_id "ERV316A3_2p15b"; transcript_id "ERV316A3_2p15b"; locus "ERV316A3_2p15b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0257"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "-196"; repStart "1"; chr2 rmsk exon 63345528 63346272 1569 + . gene_id "ERV316A3_2p15b"; transcript_id "ERV316A3_2p15b"; locus "ERV316A3_2p15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0257"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "-4075"; repStart "354"; chr2 rmsk exon 63346409 63346595 724 + . gene_id "ERV316A3_2p15b"; transcript_id "ERV316A3_2p15b"; locus "ERV316A3_2p15b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0257"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-269"; repStart "2"; ### HERVK11_2p14 ### chr2 rmsk gene 63988445 63997140 . + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0013"; model_cov "6738"; model_pct "84.7"; chr2 rmsk exon 63988445 63989546 5729 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 63989547 63989868 2318 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "-7634"; repStart "1"; chr2 rmsk exon 63989866 63992327 18656 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "2698"; repFamily "ERVK"; repLeft "-5255"; repStart "206"; chr2 rmsk exon 63992322 63992937 11219 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "3565"; repFamily "ERVK"; repLeft "-4388"; repStart "2912"; chr2 rmsk exon 63993004 63993977 11219 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "3566"; chr2 rmsk exon 63993976 63995162 9277 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "5525"; chr2 rmsk exon 63995149 63996131 8062 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6955"; chr2 rmsk exon 63996132 63997140 5101 + . gene_id "HERVK11_2p14"; transcript_id "HERVK11_2p14"; locus "HERVK11_2p14"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0013"; repClass "LTR"; repEnd "1067"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### MER101_2p14 ### chr2 rmsk gene 64069026 64070451 . + . gene_id "MER101_2p14"; transcript_id "MER101_2p14"; locus "MER101_2p14"; category "internal"; intModel "MER101-int"; locid "MER101-int_0052"; model_cov "1015"; model_pct "15.3"; chr2 rmsk exon 64069026 64069355 2554 + . gene_id "MER101_2p14"; transcript_id "MER101_2p14"; locus "MER101_2p14"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0052"; repClass "LTR"; repEnd "1744"; repFamily "ERV1"; repLeft "-4895"; repStart "1382"; chr2 rmsk exon 64069660 64069968 2554 + . gene_id "MER101_2p14"; transcript_id "MER101_2p14"; locus "MER101_2p14"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0052"; repClass "LTR"; repEnd "2696"; repFamily "ERV1"; repLeft "-3943"; repStart "2197"; chr2 rmsk exon 64070252 64070451 618 + . gene_id "MER101_2p14"; transcript_id "MER101_2p14"; locus "MER101_2p14"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0052"; repClass "LTR"; repEnd "4622"; repFamily "ERV1"; repLeft "-2017"; repStart "4468"; ### HERVH_2p14a ### chr2 rmsk gene 64074809 64079933 . - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0135"; model_cov "4233"; model_pct "54.9"; chr2 rmsk exon 64074809 64075166 2482 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 64075167 64075544 2445 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 64075543 64075703 1240 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5660"; repStart "-1894"; chr2 rmsk exon 64076163 64076221 1240 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "5659"; repFamily "ERV1"; repLeft "5600"; repStart "-2054"; chr2 rmsk exon 64076223 64076872 4239 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 64076875 64077368 3435 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr2 rmsk exon 64077368 64077513 876 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3142"; repStart "-4423"; chr2 rmsk exon 64077510 64079862 16669 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "665"; repStart "-4726"; chr2 rmsk exon 64079866 64079933 583 - . gene_id "HERVH_2p14a"; transcript_id "HERVH_2p14a"; locus "HERVH_2p14a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0135"; repClass "LTR"; repEnd "68"; repFamily "ERV1"; repLeft "1"; repStart "-396"; ### HERVH_2p14b ### chr2 rmsk gene 64252414 64257646 . + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0136"; model_cov "4236"; model_pct "54.9"; chr2 rmsk exon 64252414 64252895 3404 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 64252898 64255935 20742 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 64255930 64256074 892 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "3285"; repFamily "ERV1"; repLeft "-4428"; repStart "3140"; chr2 rmsk exon 64256074 64256174 660 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "-4069"; repStart "3544"; chr2 rmsk exon 64256174 64256583 2612 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4740"; chr2 rmsk exon 64256617 64256819 1270 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5614"; chr2 rmsk exon 64256818 64257196 2574 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 64257197 64257646 3700 + . gene_id "HERVH_2p14b"; transcript_id "HERVH_2p14b"; locus "HERVH_2p14b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0136"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVE_2p14a ### chr2 rmsk gene 64887412 64891023 . - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0006"; model_cov "3182"; model_pct "40.7"; chr2 rmsk exon 64887412 64887522 626 - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0006"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "392"; repStart "0"; chr2 rmsk exon 64887509 64887657 804 - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0006"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "287"; repStart "-66"; chr2 rmsk exon 64887795 64887892 421 - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0006"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "7714"; repStart "0"; chr2 rmsk exon 64887936 64888448 3144 - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0006"; repClass "LTR"; repEnd "5986"; repFamily "ERV1"; repLeft "5458"; repStart "-1827"; chr2 rmsk exon 64888438 64891023 17320 - . gene_id "HERVE_2p14a"; transcript_id "HERVE_2p14a"; locus "HERVE_2p14a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0006"; repClass "LTR"; repEnd "5096"; repFamily "ERV1"; repLeft "2541"; repStart "-2717"; ### HERVE_2p14b ### chr2 rmsk gene 64897102 64899872 . - . gene_id "HERVE_2p14b"; transcript_id "HERVE_2p14b"; locus "HERVE_2p14b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0007"; model_cov "2554"; model_pct "32.7"; chr2 rmsk exon 64897102 64899665 10605 - . gene_id "HERVE_2p14b"; transcript_id "HERVE_2p14b"; locus "HERVE_2p14b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0007"; repClass "LTR"; repEnd "2555"; repFamily "ERV1"; repLeft "1"; repStart "-5258"; chr2 rmsk exon 64899666 64899872 701 - . gene_id "HERVE_2p14b"; transcript_id "HERVE_2p14b"; locus "HERVE_2p14b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0007"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; ### ERVLE_2p14a ### chr2 rmsk gene 64961123 64961913 . + . gene_id "ERVLE_2p14a"; transcript_id "ERVLE_2p14a"; locus "ERVLE_2p14a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0436"; model_cov "913"; model_pct "16.1"; chr2 rmsk exon 64961123 64961913 2772 + . gene_id "ERVLE_2p14a"; transcript_id "ERVLE_2p14a"; locus "ERVLE_2p14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0436"; repClass "LTR"; repEnd "874"; repFamily "ERVL"; repLeft "-4793"; repStart "-39"; ### HERVIP10FH_2p14 ### chr2 rmsk gene 65044235 65046931 . - . gene_id "HERVIP10FH_2p14"; transcript_id "HERVIP10FH_2p14"; locus "HERVIP10FH_2p14"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0021"; model_cov "4001"; model_pct "78.4"; chr2 rmsk exon 65044235 65044776 3351 - . gene_id "HERVIP10FH_2p14"; transcript_id "HERVIP10FH_2p14"; locus "HERVIP10FH_2p14"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10FH-int_0021"; repClass "LTR"; repEnd "544"; repFamily "ERV1"; repLeft "1"; repStart "-65"; chr2 rmsk exon 65044777 65046931 8296 - . gene_id "HERVIP10FH_2p14"; transcript_id "HERVIP10FH_2p14"; locus "HERVIP10FH_2p14"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0021"; repClass "LTR"; repEnd "5099"; repFamily "ERV1"; repLeft "1098"; repStart "-3"; ### ERVLE_2p14b ### chr2 rmsk gene 65053217 65053895 . + . gene_id "ERVLE_2p14b"; transcript_id "ERVLE_2p14b"; locus "ERVLE_2p14b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0437"; model_cov "739"; model_pct "13.0"; chr2 rmsk exon 65053217 65053895 1338 + . gene_id "ERVLE_2p14b"; transcript_id "ERVLE_2p14b"; locus "ERVLE_2p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0437"; repClass "LTR"; repEnd "5430"; repFamily "ERVL"; repLeft "-237"; repStart "4691"; ### ERV316A3_2p14 ### chr2 rmsk gene 65952925 65958811 . - . gene_id "ERV316A3_2p14"; transcript_id "ERV316A3_2p14"; locus "ERV316A3_2p14"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0259"; model_cov "5130"; model_pct "98.2"; chr2 rmsk exon 65952925 65956643 9416 - . gene_id "ERV316A3_2p14"; transcript_id "ERV316A3_2p14"; locus "ERV316A3_2p14"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0259"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "1428"; repStart "-93"; chr2 rmsk exon 65957015 65958384 9416 - . gene_id "ERV316A3_2p14"; transcript_id "ERV316A3_2p14"; locus "ERV316A3_2p14"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0259"; repClass "LTR"; repEnd "1427"; repFamily "ERVL"; repLeft "2"; repStart "-3799"; chr2 rmsk exon 65958400 65958811 1125 - . gene_id "ERV316A3_2p14"; transcript_id "ERV316A3_2p14"; locus "ERV316A3_2p14"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0259"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### HERVH_2p14c ### chr2 rmsk gene 66243889 66249502 . + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0137"; model_cov "4775"; model_pct "61.9"; chr2 rmsk exon 66243889 66244336 3372 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 66244339 66247342 18760 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 66247322 66247471 909 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 66247471 66247963 3135 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr2 rmsk exon 66247966 66248626 3939 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 66248628 66248777 949 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1965"; repStart "5600"; chr2 rmsk exon 66248779 66249096 2115 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7384"; chr2 rmsk exon 66249097 66249502 2867 + . gene_id "HERVH_2p14c"; transcript_id "HERVH_2p14c"; locus "HERVH_2p14c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0137"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "-46"; repStart "1"; ### HERVH_2p14d ### chr2 rmsk gene 67331517 67337601 . + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0138"; model_cov "5246"; model_pct "68.0"; chr2 rmsk exon 67331517 67331914 2617 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 67331917 67335853 15422 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr2 rmsk exon 67335856 67336517 4059 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 67336519 67336734 1253 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 67336735 67336802 2007 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "7393"; repFamily "ERV1"; repLeft "-320"; repStart "7324"; chr2 rmsk exon 67336848 67337136 2007 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "7699"; repFamily "ERV1"; repLeft "-14"; repStart "7394"; chr2 rmsk exon 67337203 67337601 2773 + . gene_id "HERVH_2p14d"; transcript_id "HERVH_2p14d"; locus "HERVH_2p14d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0138"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML1_2p13.3 ### chr2 rmsk gene 68606478 68607524 . - . gene_id "HML1_2p13.3"; transcript_id "HML1_2p13.3"; locus "HML1_2p13.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0007"; model_cov "717"; model_pct "11.8"; chr2 rmsk exon 68606478 68606791 2262 - . gene_id "HML1_2p13.3"; transcript_id "HML1_2p13.3"; locus "HML1_2p13.3"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0007"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 68606797 68607048 1707 - . gene_id "HML1_2p13.3"; transcript_id "HML1_2p13.3"; locus "HML1_2p13.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0007"; repClass "LTR"; repEnd "6093"; repFamily "ERVK"; repLeft "5821"; repStart "-3"; chr2 rmsk exon 68607105 68607191 573 - . gene_id "HML1_2p13.3"; transcript_id "HML1_2p13.3"; locus "HML1_2p13.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0007"; repClass "LTR"; repEnd "5764"; repFamily "ERVK"; repLeft "5656"; repStart "-332"; chr2 rmsk exon 68607191 68607524 2707 - . gene_id "HML1_2p13.3"; transcript_id "HML1_2p13.3"; locus "HML1_2p13.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0007"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "5215"; repStart "-544"; ### ERV316A3_2p13.3 ### chr2 rmsk gene 69255819 69265142 . + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0262"; model_cov "5069"; model_pct "97.0"; chr2 rmsk exon 69255819 69256194 833 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "17"; chr2 rmsk exon 69256204 69256664 1204 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "691"; repFamily "ERVL"; repLeft "-4535"; repStart "231"; chr2 rmsk exon 69256946 69257037 1204 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "-4443"; repStart "692"; chr2 rmsk exon 69259320 69259641 11139 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "-4186"; repStart "707"; chr2 rmsk exon 69260678 69264738 11139 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "1041"; chr2 rmsk exon 69264743 69265142 1288 + . gene_id "ERV316A3_2p13.3"; transcript_id "ERV316A3_2p13.3"; locus "ERV316A3_2p13.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0262"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HERVH_2p13.3a ### chr2 rmsk gene 69443011 69449341 . - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0139"; model_cov "5597"; model_pct "72.6"; chr2 rmsk exon 69443011 69443407 2604 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 69443408 69443784 2519 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 69443785 69444004 1458 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 69444010 69444908 6219 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "4221"; repStart "-2568"; chr2 rmsk exon 69444901 69445235 2038 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "5018"; repFamily "ERV1"; repLeft "4684"; repStart "-2695"; chr2 rmsk exon 69445230 69448941 22868 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "3732"; repFamily "ERV1"; repLeft "1"; repStart "-3981"; chr2 rmsk exon 69448944 69449341 2651 - . gene_id "HERVH_2p13.3a"; transcript_id "HERVH_2p13.3a"; locus "HERVH_2p13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0139"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### LTR25_2p13.3 ### chr2 rmsk gene 69790238 69794493 . - . gene_id "LTR25_2p13.3"; transcript_id "LTR25_2p13.3"; locus "LTR25_2p13.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0015"; model_cov "3929"; model_pct "54.7"; chr2 rmsk exon 69790238 69792971 23769 - . gene_id "LTR25_2p13.3"; transcript_id "LTR25_2p13.3"; locus "LTR25_2p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0015"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "4480"; repStart "-1"; chr2 rmsk exon 69793263 69794493 23769 - . gene_id "LTR25_2p13.3"; transcript_id "LTR25_2p13.3"; locus "LTR25_2p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0015"; repClass "LTR"; repEnd "4479"; repFamily "ERV1"; repLeft "3257"; repStart "-2709"; ### HUERSP3_2p13.3 ### chr2 rmsk gene 69794782 69798802 . - . gene_id "HUERSP3_2p13.3"; transcript_id "HUERSP3_2p13.3"; locus "HUERSP3_2p13.3"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0022"; model_cov "4083"; model_pct "45.8"; chr2 rmsk exon 69794782 69796464 10836 - . gene_id "HUERSP3_2p13.3"; transcript_id "HUERSP3_2p13.3"; locus "HUERSP3_2p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0022"; repClass "LTR"; repEnd "4367"; repFamily "ERV1"; repLeft "2637"; repStart "-4552"; chr2 rmsk exon 69796455 69798802 7974 - . gene_id "HUERSP3_2p13.3"; transcript_id "HUERSP3_2p13.3"; locus "HUERSP3_2p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0022"; repClass "LTR"; repEnd "4114"; repFamily "ERV1"; repLeft "1761"; repStart "-4805"; ### HERVL18_2p13.3 ### chr2 rmsk gene 70201614 70204962 . + . gene_id "HERVL18_2p13.3"; transcript_id "HERVL18_2p13.3"; locus "HERVL18_2p13.3"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0017"; model_cov "2820"; model_pct "46.6"; chr2 rmsk exon 70201614 70201906 989 + . gene_id "HERVL18_2p13.3"; transcript_id "HERVL18_2p13.3"; locus "HERVL18_2p13.3"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0017"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-13"; repStart "2"; chr2 rmsk exon 70201915 70203817 16265 + . gene_id "HERVL18_2p13.3"; transcript_id "HERVL18_2p13.3"; locus "HERVL18_2p13.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0017"; repClass "LTR"; repEnd "1991"; repFamily "ERVL"; repLeft "-4056"; repStart "2"; chr2 rmsk exon 70204123 70204962 16265 + . gene_id "HERVL18_2p13.3"; transcript_id "HERVL18_2p13.3"; locus "HERVL18_2p13.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0017"; repClass "LTR"; repEnd "2823"; repFamily "ERVL"; repLeft "-3224"; repStart "1992"; ### HERVH_2p13.3b ### chr2 rmsk gene 70620550 70626409 . + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0140"; model_cov "5159"; model_pct "66.9"; chr2 rmsk exon 70620550 70620897 2160 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 70620900 70624615 17753 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "3746"; repFamily "ERV1"; repLeft "-3967"; repStart "1"; chr2 rmsk exon 70624611 70624754 1130 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3850"; chr2 rmsk exon 70624757 70625417 4401 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 70625419 70625634 1438 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 70625633 70626008 2350 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 70626009 70626409 2770 + . gene_id "HERVH_2p13.3b"; transcript_id "HERVH_2p13.3b"; locus "HERVH_2p13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0140"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVE_2p13.3a ### chr2 rmsk gene 71020400 71024471 . + . gene_id "HERVE_2p13.3a"; transcript_id "HERVE_2p13.3a"; locus "HERVE_2p13.3a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0008"; model_cov "4057"; model_pct "51.9"; chr2 rmsk exon 71020400 71024471 29647 + . gene_id "HERVE_2p13.3a"; transcript_id "HERVE_2p13.3a"; locus "HERVE_2p13.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0008"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_2p13.3b ### chr2 rmsk gene 71046155 71050605 . + . gene_id "HERVE_2p13.3b"; transcript_id "HERVE_2p13.3b"; locus "HERVE_2p13.3b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0009"; model_cov "4149"; model_pct "53.1"; chr2 rmsk exon 71046155 71046340 1218 + . gene_id "HERVE_2p13.3b"; transcript_id "HERVE_2p13.3b"; locus "HERVE_2p13.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0009"; repClass "LTR"; repEnd "494"; repFamily "ERV1"; repLeft "-7"; repStart "315"; chr2 rmsk exon 71046431 71048563 15341 + . gene_id "HERVE_2p13.3b"; transcript_id "HERVE_2p13.3b"; locus "HERVE_2p13.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0009"; repClass "LTR"; repEnd "2795"; repFamily "ERV1"; repLeft "-5018"; repStart "647"; chr2 rmsk exon 71048569 71050605 15042 + . gene_id "HERVE_2p13.3b"; transcript_id "HERVE_2p13.3b"; locus "HERVE_2p13.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0009"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "3164"; ### HERVH_2p13.3c ### chr2 rmsk gene 71086360 71090997 . - . gene_id "HERVH_2p13.3c"; transcript_id "HERVH_2p13.3c"; locus "HERVH_2p13.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0141"; model_cov "6209"; model_pct "80.5"; chr2 rmsk exon 71086360 71086808 3537 - . gene_id "HERVH_2p13.3c"; transcript_id "HERVH_2p13.3c"; locus "HERVH_2p13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0141"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 71086809 71087185 2526 - . gene_id "HERVH_2p13.3c"; transcript_id "HERVH_2p13.3c"; locus "HERVH_2p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0141"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 71087184 71090544 17688 - . gene_id "HERVH_2p13.3c"; transcript_id "HERVH_2p13.3c"; locus "HERVH_2p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0141"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "1"; repStart "-1894"; chr2 rmsk exon 71090547 71090997 3463 - . gene_id "HERVH_2p13.3c"; transcript_id "HERVH_2p13.3c"; locus "HERVH_2p13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0141"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_2p13.3d ### chr2 rmsk gene 71157778 71165609 . - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0142"; model_cov "5031"; model_pct "65.2"; chr2 rmsk exon 71157778 71158206 3344 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 71158207 71158586 2690 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 71158585 71158801 1398 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 71158803 71159463 4373 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 71159466 71159968 3411 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 71159959 71160417 3231 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "2837"; repStart "-4423"; chr2 rmsk exon 71162154 71164788 16545 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "2848"; repFamily "ERV1"; repLeft "437"; repStart "-4865"; chr2 rmsk exon 71164767 71165162 2607 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "3918"; repFamily "ERV1"; repLeft "3523"; repStart "-3795"; chr2 rmsk exon 71165181 71165609 3317 - . gene_id "HERVH_2p13.3d"; transcript_id "HERVH_2p13.3d"; locus "HERVH_2p13.3d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0142"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML5_2p13.2 ### chr2 rmsk gene 71388099 71395817 . + . gene_id "HML5_2p13.2"; transcript_id "HML5_2p13.2"; locus "HML5_2p13.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0017"; model_cov "6834"; model_pct "100.0"; chr2 rmsk exon 71388099 71388644 2011 + . gene_id "HML5_2p13.2"; transcript_id "HML5_2p13.2"; locus "HML5_2p13.2"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0017"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 71388647 71395356 48501 + . gene_id "HML5_2p13.2"; transcript_id "HML5_2p13.2"; locus "HML5_2p13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0017"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr2 rmsk exon 71395357 71395817 2213 + . gene_id "HML5_2p13.2"; transcript_id "HML5_2p13.2"; locus "HML5_2p13.2"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0017"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_2p13.2a ### chr2 rmsk gene 71444089 71446102 . + . gene_id "ERVLE_2p13.2a"; transcript_id "ERVLE_2p13.2a"; locus "ERVLE_2p13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0442"; model_cov "878"; model_pct "15.5"; chr2 rmsk exon 71444089 71444433 2146 + . gene_id "ERVLE_2p13.2a"; transcript_id "ERVLE_2p13.2a"; locus "ERVLE_2p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0442"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "-1094"; repStart "4218"; chr2 rmsk exon 71445594 71446102 2146 + . gene_id "ERVLE_2p13.2a"; transcript_id "ERVLE_2p13.2a"; locus "ERVLE_2p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0442"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "-570"; repStart "4574"; ### ERVLE_2p13.2b ### chr2 rmsk gene 73195609 73199267 . + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0445"; model_cov "2506"; model_pct "44.2"; chr2 rmsk exon 73195609 73196155 1748 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "-51"; repStart "10"; chr2 rmsk exon 73196324 73196381 257 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "604"; chr2 rmsk exon 73196389 73196575 1132 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "-5520"; repStart "6"; chr2 rmsk exon 73196894 73197314 1996 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "679"; repFamily "ERVL"; repLeft "-4988"; repStart "148"; chr2 rmsk exon 73197642 73198293 1996 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "1412"; repFamily "ERVL"; repLeft "-4255"; repStart "633"; chr2 rmsk exon 73198321 73198512 991 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "-1339"; repStart "4056"; chr2 rmsk exon 73198510 73199181 3200 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "4970"; repFamily "ERVL"; repLeft "-697"; repStart "4267"; chr2 rmsk exon 73199189 73199267 346 + . gene_id "ERVLE_2p13.2b"; transcript_id "ERVLE_2p13.2b"; locus "ERVLE_2p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0445"; repClass "LTR"; repEnd "5131"; repFamily "ERVL"; repLeft "-536"; repStart "5051"; ### ERVLE_2p13.1 ### chr2 rmsk gene 73362111 73368119 . + . gene_id "ERVLE_2p13.1"; transcript_id "ERVLE_2p13.1"; locus "ERVLE_2p13.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0447"; model_cov "4673"; model_pct "82.5"; chr2 rmsk exon 73362111 73362985 1301 + . gene_id "ERVLE_2p13.1"; transcript_id "ERVLE_2p13.1"; locus "ERVLE_2p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0447"; repClass "LTR"; repEnd "951"; repFamily "ERVL"; repLeft "-4716"; repStart "9"; chr2 rmsk exon 73363612 73365645 4731 + . gene_id "ERVLE_2p13.1"; transcript_id "ERVLE_2p13.1"; locus "ERVLE_2p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0447"; repClass "LTR"; repEnd "3477"; repFamily "ERVL"; repLeft "-2190"; repStart "1356"; chr2 rmsk exon 73366177 73367359 4762 + . gene_id "ERVLE_2p13.1"; transcript_id "ERVLE_2p13.1"; locus "ERVLE_2p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0447"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "-931"; repStart "3478"; chr2 rmsk exon 73367769 73368119 4762 + . gene_id "ERVLE_2p13.1"; transcript_id "ERVLE_2p13.1"; locus "ERVLE_2p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0447"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "-578"; repStart "4737"; ### PRIMA4_2p13.1 ### chr2 rmsk gene 73630469 73632369 . + . gene_id "PRIMA4_2p13.1"; transcript_id "PRIMA4_2p13.1"; locus "PRIMA4_2p13.1"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0030"; model_cov "1259"; model_pct "15.2"; chr2 rmsk exon 73630469 73630680 316 + . gene_id "PRIMA4_2p13.1"; transcript_id "PRIMA4_2p13.1"; locus "PRIMA4_2p13.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0030"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4982"; repStart "3076"; chr2 rmsk exon 73631537 73632369 842 + . gene_id "PRIMA4_2p13.1"; transcript_id "PRIMA4_2p13.1"; locus "PRIMA4_2p13.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0030"; repClass "LTR"; repEnd "3774"; repFamily "ERV1"; repLeft "-4496"; repStart "2727"; ### PABLB_2p13.1 ### chr2 rmsk gene 73752093 73760464 . + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0010"; model_cov "6095"; model_pct "85.6"; chr2 rmsk exon 73752093 73753750 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "2628"; repFamily "ERV1"; repLeft "-4494"; repStart "953"; chr2 rmsk exon 73754759 73754799 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "2661"; repFamily "ERV1"; repLeft "-4461"; repStart "2629"; chr2 rmsk exon 73755092 73755790 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "3369"; repFamily "ERV1"; repLeft "-3753"; repStart "2662"; chr2 rmsk exon 73756095 73756930 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "4202"; repFamily "ERV1"; repLeft "-2920"; repStart "3370"; chr2 rmsk exon 73757244 73758104 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "5027"; repFamily "ERV1"; repLeft "-2095"; repStart "4203"; chr2 rmsk exon 73758416 73760464 4886 + . gene_id "PABLB_2p13.1"; transcript_id "PABLB_2p13.1"; locus "PABLB_2p13.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0010"; repClass "LTR"; repEnd "7053"; repFamily "ERV1"; repLeft "-69"; repStart "5028"; ### HERVH_2p12a ### chr2 rmsk gene 75213731 75219537 . - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0143"; model_cov "4901"; model_pct "63.5"; chr2 rmsk exon 75213731 75214178 3498 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 75214179 75214555 2368 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 75214556 75214771 1322 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 75214773 75215435 4065 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 75215465 75215967 3181 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "3492"; repStart "-3722"; chr2 rmsk exon 75215958 75216107 921 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 75216087 75219066 18728 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "12"; repStart "-4718"; chr2 rmsk exon 75219087 75219537 3529 - . gene_id "HERVH_2p12a"; transcript_id "HERVH_2p12a"; locus "HERVH_2p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0143"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_2p12a ### chr2 rmsk gene 75361114 75362892 . + . gene_id "ERVLE_2p12a"; transcript_id "ERVLE_2p12a"; locus "ERVLE_2p12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0450"; model_cov "1025"; model_pct "18.1"; chr2 rmsk exon 75361114 75361326 288 + . gene_id "ERVLE_2p12a"; transcript_id "ERVLE_2p12a"; locus "ERVLE_2p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0450"; repClass "LTR"; repEnd "1137"; repFamily "ERVL"; repLeft "-4530"; repStart "926"; chr2 rmsk exon 75361496 75361930 1046 + . gene_id "ERVLE_2p12a"; transcript_id "ERVLE_2p12a"; locus "ERVLE_2p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0450"; repClass "LTR"; repEnd "1583"; repFamily "ERVL"; repLeft "-4084"; repStart "1144"; chr2 rmsk exon 75362439 75362635 382 + . gene_id "ERVLE_2p12a"; transcript_id "ERVLE_2p12a"; locus "ERVLE_2p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0450"; repClass "LTR"; repEnd "2299"; repFamily "ERVL"; repLeft "-3368"; repStart "2042"; chr2 rmsk exon 75362773 75362892 388 + . gene_id "ERVLE_2p12a"; transcript_id "ERVLE_2p12a"; locus "ERVLE_2p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0450"; repClass "LTR"; repEnd "2618"; repFamily "ERVL"; repLeft "-3049"; repStart "2500"; ### ERVLE_2p12b ### chr2 rmsk gene 75375080 75376803 . + . gene_id "ERVLE_2p12b"; transcript_id "ERVLE_2p12b"; locus "ERVLE_2p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0451"; model_cov "1773"; model_pct "31.3"; chr2 rmsk exon 75375080 75375169 250 + . gene_id "ERVLE_2p12b"; transcript_id "ERVLE_2p12b"; locus "ERVLE_2p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0451"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "-2628"; repStart "2950"; chr2 rmsk exon 75375202 75375693 1073 + . gene_id "ERVLE_2p12b"; transcript_id "ERVLE_2p12b"; locus "ERVLE_2p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0451"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2061"; repStart "3105"; chr2 rmsk exon 75375747 75376803 2080 + . gene_id "ERVLE_2p12b"; transcript_id "ERVLE_2p12b"; locus "ERVLE_2p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0451"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "-736"; repStart "3748"; ### HERVFRD_2p12a ### chr2 rmsk gene 75388168 75391565 . - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0024"; model_cov "2450"; model_pct "34.0"; chr2 rmsk exon 75388168 75388660 2882 - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0024"; repClass "LTR"; repEnd "6401"; repFamily "ERV1"; repLeft "5911"; repStart "-804"; chr2 rmsk exon 75388658 75388770 627 - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0024"; repClass "LTR"; repEnd "2900"; repFamily "ERV1"; repLeft "2788"; repStart "-4305"; chr2 rmsk exon 75388767 75389716 5739 - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0024"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "834"; repStart "-5355"; chr2 rmsk exon 75390030 75390880 5739 - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0024"; repClass "LTR"; repEnd "833"; repFamily "ERV1"; repLeft "1"; repStart "-6372"; chr2 rmsk exon 75390882 75391565 3213 - . gene_id "HERVFRD_2p12a"; transcript_id "HERVFRD_2p12a"; locus "HERVFRD_2p12a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0024"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### HERVL_2p12a ### chr2 rmsk gene 75392317 75397169 . - . gene_id "HERVL_2p12a"; transcript_id "HERVL_2p12a"; locus "HERVL_2p12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0146"; model_cov "3941"; model_pct "69.7"; chr2 rmsk exon 75392317 75392746 3004 - . gene_id "HERVL_2p12a"; transcript_id "HERVL_2p12a"; locus "HERVL_2p12a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0146"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 75392747 75395507 20634 - . gene_id "HERVL_2p12a"; transcript_id "HERVL_2p12a"; locus "HERVL_2p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0146"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2887"; repStart "0"; chr2 rmsk exon 75395513 75396731 7995 - . gene_id "HERVL_2p12a"; transcript_id "HERVL_2p12a"; locus "HERVL_2p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0146"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "1"; repStart "-4479"; chr2 rmsk exon 75396732 75397169 3158 - . gene_id "HERVL_2p12a"; transcript_id "HERVL_2p12a"; locus "HERVL_2p12a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0146"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVW_2p12a ### chr2 rmsk gene 75871690 75879498 . + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0037"; model_cov "6347"; model_pct "73.6"; chr2 rmsk exon 75871690 75872461 5953 + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0037"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 75872462 75878417 45774 + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0037"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr2 rmsk exon 75878411 75878449 261 + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0037"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr2 rmsk exon 75878440 75878731 2242 + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0037"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 75878732 75879498 5791 + . gene_id "HERVW_2p12a"; transcript_id "HERVW_2p12a"; locus "HERVW_2p12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0037"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2p12c ### chr2 rmsk gene 76386329 76388577 . - . gene_id "ERVLE_2p12c"; transcript_id "ERVLE_2p12c"; locus "ERVLE_2p12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0454"; model_cov "1085"; model_pct "19.1"; chr2 rmsk exon 76386329 76386784 1237 - . gene_id "ERVLE_2p12c"; transcript_id "ERVLE_2p12c"; locus "ERVLE_2p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0454"; repClass "LTR"; repEnd "4379"; repFamily "ERVL"; repLeft "3890"; repStart "-1288"; chr2 rmsk exon 76386879 76387223 596 - . gene_id "ERVLE_2p12c"; transcript_id "ERVLE_2p12c"; locus "ERVLE_2p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0454"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "3541"; repStart "-1769"; chr2 rmsk exon 76388340 76388577 361 - . gene_id "ERVLE_2p12c"; transcript_id "ERVLE_2p12c"; locus "ERVLE_2p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0454"; repClass "LTR"; repEnd "2928"; repFamily "ERVL"; repLeft "2689"; repStart "-2739"; ### HERVH_2p12b ### chr2 rmsk gene 76573625 76579704 . - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0144"; model_cov "5263"; model_pct "68.2"; chr2 rmsk exon 76573625 76574075 3563 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 76574076 76574453 2388 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 76574452 76574667 1399 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 76574669 76575330 4483 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 76575333 76579251 25804 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr2 rmsk exon 76579254 76579704 3372 - . gene_id "HERVH_2p12b"; transcript_id "HERVH_2p12b"; locus "HERVH_2p12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0144"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_2p12b ### chr2 rmsk gene 76596620 76598412 . + . gene_id "HERVL_2p12b"; transcript_id "HERVL_2p12b"; locus "HERVL_2p12b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0147"; model_cov "1792"; model_pct "31.7"; chr2 rmsk exon 76596620 76597928 9663 + . gene_id "HERVL_2p12b"; transcript_id "HERVL_2p12b"; locus "HERVL_2p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0147"; repClass "LTR"; repEnd "3180"; repFamily "ERVL"; repLeft "-2474"; repStart "1887"; chr2 rmsk exon 76597913 76598412 3931 + . gene_id "HERVL_2p12b"; transcript_id "HERVL_2p12b"; locus "HERVL_2p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0147"; repClass "LTR"; repEnd "4504"; repFamily "ERVL"; repLeft "-1150"; repStart "4005"; ### ERVL_2p12a ### chr2 rmsk gene 76662223 76662798 . - . gene_id "ERVL_2p12a"; transcript_id "ERVL_2p12a"; locus "ERVL_2p12a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0037"; model_cov "576"; model_pct "10.0"; chr2 rmsk exon 76662223 76662798 1062 - . gene_id "ERVL_2p12a"; transcript_id "ERVL_2p12a"; locus "ERVL_2p12a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0037"; repClass "LTR"; repEnd "5382"; repFamily "ERVL"; repLeft "4806"; repStart "-375"; ### HERVH_2p12c ### chr2 rmsk gene 77088247 77094030 . + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0145"; model_cov "4916"; model_pct "63.7"; chr2 rmsk exon 77088247 77088674 3274 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "24"; chr2 rmsk exon 77088677 77091793 19634 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 77091773 77091922 955 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 77091913 77092415 3315 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 77092418 77093071 4303 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 77093073 77093288 1388 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 77093287 77093666 2435 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 77093667 77094030 2836 + . gene_id "HERVH_2p12c"; transcript_id "HERVH_2p12c"; locus "HERVH_2p12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0145"; repClass "LTR"; repEnd "365"; repFamily "ERV1"; repLeft "-85"; repStart "1"; ### HERVK11_2p12 ### chr2 rmsk gene 77112694 77115602 . - . gene_id "HERVK11_2p12"; transcript_id "HERVK11_2p12"; locus "HERVK11_2p12"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0014"; model_cov "1899"; model_pct "23.9"; chr2 rmsk exon 77112694 77114589 14039 - . gene_id "HERVK11_2p12"; transcript_id "HERVK11_2p12"; locus "HERVK11_2p12"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0014"; repClass "LTR"; repEnd "1900"; repFamily "ERVK"; repLeft "1"; repStart "-6053"; chr2 rmsk exon 77114590 77115602 5661 - . gene_id "HERVK11_2p12"; transcript_id "HERVK11_2p12"; locus "HERVK11_2p12"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0014"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_2p12a ### chr2 rmsk gene 77507725 77508485 . + . gene_id "ERVLB4_2p12a"; transcript_id "ERVLB4_2p12a"; locus "ERVLB4_2p12a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0169"; model_cov "782"; model_pct "13.7"; chr2 rmsk exon 77507725 77508485 3688 + . gene_id "ERVLB4_2p12a"; transcript_id "ERVLB4_2p12a"; locus "ERVLB4_2p12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0169"; repClass "LTR"; repEnd "2170"; repFamily "ERVL"; repLeft "-3544"; repStart "1388"; ### HERVFRD_2p12b ### chr2 rmsk gene 77777744 77780459 . - . gene_id "HERVFRD_2p12b"; transcript_id "HERVFRD_2p12b"; locus "HERVFRD_2p12b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0025"; model_cov "1389"; model_pct "19.3"; chr2 rmsk exon 77777744 77778457 4142 - . gene_id "HERVFRD_2p12b"; transcript_id "HERVFRD_2p12b"; locus "HERVFRD_2p12b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0025"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr2 rmsk exon 77778458 77779361 6191 - . gene_id "HERVFRD_2p12b"; transcript_id "HERVFRD_2p12b"; locus "HERVFRD_2p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0025"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "415"; repStart "-5804"; chr2 rmsk exon 77779440 77779848 6191 - . gene_id "HERVFRD_2p12b"; transcript_id "HERVFRD_2p12b"; locus "HERVFRD_2p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0025"; repClass "LTR"; repEnd "414"; repFamily "ERV1"; repLeft "11"; repStart "-6791"; chr2 rmsk exon 77779859 77780459 3401 - . gene_id "HERVFRD_2p12b"; transcript_id "HERVFRD_2p12b"; locus "HERVFRD_2p12b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0025"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "128"; repStart "0"; ### HERVFRD_2p12c ### chr2 rmsk gene 77830855 77836422 . + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0026"; model_cov "4180"; model_pct "58.0"; chr2 rmsk exon 77830855 77831567 4277 + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0026"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr2 rmsk exon 77831568 77833429 11044 + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0026"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "7"; chr2 rmsk exon 77833426 77834757 5515 + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0026"; repClass "LTR"; repEnd "4104"; repFamily "ERV1"; repLeft "-3101"; repStart "2788"; chr2 rmsk exon 77834754 77835771 6605 + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0026"; repClass "LTR"; repEnd "7200"; repFamily "ERV1"; repLeft "-5"; repStart "6179"; chr2 rmsk exon 77835772 77836422 2958 + . gene_id "HERVFRD_2p12c"; transcript_id "HERVFRD_2p12c"; locus "HERVFRD_2p12c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0026"; repClass "LTR"; repEnd "701"; repFamily "ERV1"; repLeft "-33"; repStart "43"; ### HERVH_2p12d ### chr2 rmsk gene 77965140 77970850 . + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0146"; model_cov "4919"; model_pct "63.8"; chr2 rmsk exon 77965140 77965568 3204 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 77965571 77968522 19828 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 77968502 77968651 966 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 77968642 77969144 3389 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 77969147 77969808 4294 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 77969806 77970030 1353 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 77970029 77970420 2766 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 77970421 77970850 3182 + . gene_id "HERVH_2p12d"; transcript_id "HERVH_2p12d"; locus "HERVH_2p12d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0146"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL18_2p12 ### chr2 rmsk gene 78105751 78112413 . - . gene_id "HERVL18_2p12"; transcript_id "HERVL18_2p12"; locus "HERVL18_2p12"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0019"; model_cov "6037"; model_pct "99.8"; chr2 rmsk exon 78105751 78106055 2042 - . gene_id "HERVL18_2p12"; transcript_id "HERVL18_2p12"; locus "HERVL18_2p12"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0019"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr2 rmsk exon 78106057 78112068 21761 - . gene_id "HERVL18_2p12"; transcript_id "HERVL18_2p12"; locus "HERVL18_2p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0019"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "10"; repStart "0"; chr2 rmsk exon 78112084 78112413 2019 - . gene_id "HERVL18_2p12"; transcript_id "HERVL18_2p12"; locus "HERVL18_2p12"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0019"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_2p12b ### chr2 rmsk gene 78283871 78285104 . + . gene_id "ERVL_2p12b"; transcript_id "ERVL_2p12b"; locus "ERVL_2p12b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0038"; model_cov "1280"; model_pct "22.2"; chr2 rmsk exon 78283871 78285104 6919 + . gene_id "ERVL_2p12b"; transcript_id "ERVL_2p12b"; locus "ERVL_2p12b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0038"; repClass "LTR"; repEnd "5431"; repFamily "ERVL"; repLeft "-326"; repStart "4151"; ### MER61_2p12 ### chr2 rmsk gene 78672431 78678070 . - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0050"; model_cov "5485"; model_pct "100.0"; chr2 rmsk exon 78672431 78672774 2015 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0050"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 78672775 78672827 20564 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0050"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5167"; repStart "0"; chr2 rmsk exon 78673144 78676690 20564 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0050"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-480"; repStart "-1139"; chr2 rmsk exon 78676926 78677022 4023 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0050"; repClass "LTR"; repEnd "1507"; repFamily "ERV1"; repLeft "1406"; repStart "-3710"; chr2 rmsk exon 78677039 78677723 2100 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0050"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "1"; repStart "-4440"; chr2 rmsk exon 78677724 78678070 1982 - . gene_id "MER61_2p12"; transcript_id "MER61_2p12"; locus "MER61_2p12"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0050"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_2p12e ### chr2 rmsk gene 78758203 78764267 . + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0147"; model_cov "5089"; model_pct "66.0"; chr2 rmsk exon 78758203 78758579 2027 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 78758580 78759006 1010 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr2 rmsk exon 78759065 78761310 13113 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "799"; chr2 rmsk exon 78761307 78761761 2639 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "-4112"; repStart "3142"; chr2 rmsk exon 78761749 78762993 7060 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4868"; chr2 rmsk exon 78762998 78763243 2717 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "7528"; repFamily "ERV1"; repLeft "-185"; repStart "7283"; chr2 rmsk exon 78763708 78763897 2717 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7529"; chr2 rmsk exon 78763898 78764267 2091 + . gene_id "HERVH_2p12e"; transcript_id "HERVH_2p12e"; locus "HERVH_2p12e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0147"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_2p12 ### chr2 rmsk gene 78791820 78796107 . - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0020"; model_cov "2760"; model_pct "89.4"; chr2 rmsk exon 78791820 78792607 4580 - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0020"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 78792608 78794857 14001 - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0020"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "783"; repStart "0"; chr2 rmsk exon 78794860 78795172 1530 - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0020"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "222"; repStart "-2540"; chr2 rmsk exon 78795219 78795349 652 - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0020"; repClass "LTR"; repEnd "131"; repFamily "ERV1"; repLeft "2"; repStart "-2957"; chr2 rmsk exon 78795354 78796107 4393 - . gene_id "HUERSP2_2p12"; transcript_id "HUERSP2_2p12"; locus "HUERSP2_2p12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0020"; repClass "LTR"; repEnd "786"; repFamily "ERV1"; repLeft "1"; repStart "-13"; ### HERVH_2p12f ### chr2 rmsk gene 79051400 79057072 . + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0148"; model_cov "4906"; model_pct "63.6"; chr2 rmsk exon 79051400 79051798 2574 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 79051801 79054778 19165 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 79054773 79054920 776 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 79054911 79055413 3201 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 79055416 79056078 4199 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 79056080 79056296 1318 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 79056297 79056673 2241 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 79056674 79057072 2381 + . gene_id "HERVH_2p12f"; transcript_id "HERVH_2p12f"; locus "HERVH_2p12f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0148"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH48_2p12 ### chr2 rmsk gene 79092033 79099634 . - . gene_id "HERVH48_2p12"; transcript_id "HERVH48_2p12"; locus "HERVH48_2p12"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0009"; model_cov "6652"; model_pct "100.0"; chr2 rmsk exon 79092033 79092420 2931 - . gene_id "HERVH48_2p12"; transcript_id "HERVH48_2p12"; locus "HERVH48_2p12"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0009"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 79092421 79096428 36535 - . gene_id "HERVH48_2p12"; transcript_id "HERVH48_2p12"; locus "HERVH48_2p12"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0009"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "2560"; repStart "0"; chr2 rmsk exon 79096742 79099247 36535 - . gene_id "HERVH48_2p12"; transcript_id "HERVH48_2p12"; locus "HERVH48_2p12"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0009"; repClass "LTR"; repEnd "2559"; repFamily "ERV1"; repLeft "1"; repStart "-4095"; chr2 rmsk exon 79099248 79099634 2784 - . gene_id "HERVH48_2p12"; transcript_id "HERVH48_2p12"; locus "HERVH48_2p12"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0009"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_2p12a ### chr2 rmsk gene 79128722 79130174 . - . gene_id "MER4B_2p12a"; transcript_id "MER4B_2p12a"; locus "MER4B_2p12a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0056"; model_cov "1495"; model_pct "22.1"; chr2 rmsk exon 79128722 79130174 6050 - . gene_id "MER4B_2p12a"; transcript_id "MER4B_2p12a"; locus "MER4B_2p12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0056"; repClass "LTR"; repEnd "4720"; repFamily "ERV1"; repLeft "3225"; repStart "-2038"; ### HERVW_2p12b ### chr2 rmsk gene 79163171 79170353 . - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0038"; model_cov "6345"; model_pct "73.6"; chr2 rmsk exon 79163171 79163495 2753 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr2 rmsk exon 79163496 79163788 2448 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 79163779 79163817 277 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 79163811 79168947 35232 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "855"; repStart "-2607"; chr2 rmsk exon 79168995 79169832 28863 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "2"; repStart "-7772"; chr2 rmsk exon 79169834 79170353 3925 - . gene_id "HERVW_2p12b"; transcript_id "HERVW_2p12b"; locus "HERVW_2p12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0038"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "255"; repStart "-1"; ### MER4_2p12a ### chr2 rmsk gene 79200412 79202283 . - . gene_id "MER4_2p12a"; transcript_id "MER4_2p12a"; locus "MER4_2p12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0082"; model_cov "1504"; model_pct "22.8"; chr2 rmsk exon 79200412 79201778 4834 - . gene_id "MER4_2p12a"; transcript_id "MER4_2p12a"; locus "MER4_2p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0082"; repClass "LTR"; repEnd "1505"; repFamily "ERV1"; repLeft "1"; repStart "-5093"; chr2 rmsk exon 79201782 79202283 2442 - . gene_id "MER4_2p12a"; transcript_id "MER4_2p12a"; locus "MER4_2p12a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0082"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_2p12g ### chr2 rmsk gene 79211346 79217707 . - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0149"; model_cov "5546"; model_pct "71.9"; chr2 rmsk exon 79211346 79211757 2759 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 79211758 79212110 1688 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 79212111 79212326 1376 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 79212328 79214032 7293 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3500"; repStart "-2564"; chr2 rmsk exon 79214032 79217306 17954 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr2 rmsk exon 79217309 79217707 2595 - . gene_id "HERVH_2p12g"; transcript_id "HERVH_2p12g"; locus "HERVH_2p12g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0149"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_2p12d ### chr2 rmsk gene 79501564 79504838 . + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0461"; model_cov "1999"; model_pct "35.3"; chr2 rmsk exon 79501564 79501795 489 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-5138"; repStart "292"; chr2 rmsk exon 79501816 79501946 470 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "-5060"; repStart "477"; chr2 rmsk exon 79502473 79502526 328 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "1307"; repFamily "ERVL"; repLeft "-4360"; repStart "1254"; chr2 rmsk exon 79502688 79502844 498 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "-4199"; repStart "1312"; chr2 rmsk exon 79502834 79503118 946 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "4256"; repFamily "ERVL"; repLeft "-1411"; repStart "3972"; chr2 rmsk exon 79503362 79503675 750 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-1009"; repStart "4338"; chr2 rmsk exon 79503708 79504166 1229 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "-439"; repStart "4748"; chr2 rmsk exon 79504205 79504284 355 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "5418"; repFamily "ERVL"; repLeft "-249"; repStart "5326"; chr2 rmsk exon 79504590 79504838 355 + . gene_id "ERVLE_2p12d"; transcript_id "ERVLE_2p12d"; locus "ERVLE_2p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0461"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5419"; ### HERVL_2p12c ### chr2 rmsk gene 79549367 79550201 . - . gene_id "HERVL_2p12c"; transcript_id "HERVL_2p12c"; locus "HERVL_2p12c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0149"; model_cov "870"; model_pct "15.4"; chr2 rmsk exon 79549367 79550201 1253 - . gene_id "HERVL_2p12c"; transcript_id "HERVL_2p12c"; locus "HERVL_2p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0149"; repClass "LTR"; repEnd "2766"; repFamily "ERVL"; repLeft "1896"; repStart "-2888"; ### MER4B_2p12b ### chr2 rmsk gene 79695908 79696795 . - . gene_id "MER4B_2p12b"; transcript_id "MER4B_2p12b"; locus "MER4B_2p12b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0057"; model_cov "864"; model_pct "12.8"; chr2 rmsk exon 79695908 79696795 3469 - . gene_id "MER4B_2p12b"; transcript_id "MER4B_2p12b"; locus "MER4B_2p12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0057"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5894"; repStart "0"; ### ERVL_2p12c ### chr2 rmsk gene 80068942 80070126 . - . gene_id "ERVL_2p12c"; transcript_id "ERVL_2p12c"; locus "ERVL_2p12c"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0039"; model_cov "761"; model_pct "13.2"; chr2 rmsk exon 80068942 80069391 1901 - . gene_id "ERVL_2p12c"; transcript_id "ERVL_2p12c"; locus "ERVL_2p12c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0039"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 80069392 80070126 3470 - . gene_id "ERVL_2p12c"; transcript_id "ERVL_2p12c"; locus "ERVL_2p12c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0039"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4996"; repStart "0"; ### HERVL_2p12d ### chr2 rmsk gene 80175594 80182524 . - . gene_id "HERVL_2p12d"; transcript_id "HERVL_2p12d"; locus "HERVL_2p12d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0150"; model_cov "5718"; model_pct "100.0"; chr2 rmsk exon 80175594 80176133 1839 - . gene_id "HERVL_2p12d"; transcript_id "HERVL_2p12d"; locus "HERVL_2p12d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0150"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr2 rmsk exon 80176134 80179365 33419 - . gene_id "HERVL_2p12d"; transcript_id "HERVL_2p12d"; locus "HERVL_2p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0150"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2268"; repStart "0"; chr2 rmsk exon 80179673 80181988 33419 - . gene_id "HERVL_2p12d"; transcript_id "HERVL_2p12d"; locus "HERVL_2p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0150"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "1"; repStart "-3321"; chr2 rmsk exon 80181989 80182524 1749 - . gene_id "HERVL_2p12d"; transcript_id "HERVL_2p12d"; locus "HERVL_2p12d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0150"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERVLE_2p12e ### chr2 rmsk gene 80665059 80667672 . - . gene_id "ERVLE_2p12e"; transcript_id "ERVLE_2p12e"; locus "ERVLE_2p12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0462"; model_cov "2217"; model_pct "39.1"; chr2 rmsk exon 80665059 80665429 3117 - . gene_id "ERVLE_2p12e"; transcript_id "ERVLE_2p12e"; locus "ERVLE_2p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0462"; repClass "LTR"; repEnd "2384"; repFamily "ERVL"; repLeft "2054"; repStart "-3283"; chr2 rmsk exon 80665770 80667290 3117 - . gene_id "ERVLE_2p12e"; transcript_id "ERVLE_2p12e"; locus "ERVLE_2p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0462"; repClass "LTR"; repEnd "2053"; repFamily "ERVL"; repLeft "476"; repStart "-3614"; chr2 rmsk exon 80667384 80667672 588 - . gene_id "ERVLE_2p12e"; transcript_id "ERVLE_2p12e"; locus "ERVLE_2p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0462"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "48"; repStart "-5309"; ### ERVLE_2p12f ### chr2 rmsk gene 80697269 80699590 . + . gene_id "ERVLE_2p12f"; transcript_id "ERVLE_2p12f"; locus "ERVLE_2p12f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0463"; model_cov "1577"; model_pct "27.8"; chr2 rmsk exon 80697269 80697707 537 + . gene_id "ERVLE_2p12f"; transcript_id "ERVLE_2p12f"; locus "ERVLE_2p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0463"; repClass "LTR"; repEnd "702"; repFamily "ERVL"; repLeft "-4965"; repStart "280"; chr2 rmsk exon 80698094 80698713 2126 + . gene_id "ERVLE_2p12f"; transcript_id "ERVLE_2p12f"; locus "ERVLE_2p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0463"; repClass "LTR"; repEnd "3907"; repFamily "ERVL"; repLeft "-1760"; repStart "3282"; chr2 rmsk exon 80699076 80699590 2126 + . gene_id "ERVLE_2p12f"; transcript_id "ERVLE_2p12f"; locus "ERVLE_2p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0463"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "-1229"; repStart "3908"; ### HERVH_2p12h ### chr2 rmsk gene 80875799 80880161 . - . gene_id "HERVH_2p12h"; transcript_id "HERVH_2p12h"; locus "HERVH_2p12h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0150"; model_cov "2986"; model_pct "38.7"; chr2 rmsk exon 80875799 80876230 2665 - . gene_id "HERVH_2p12h"; transcript_id "HERVH_2p12h"; locus "HERVH_2p12h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0150"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 80876231 80879793 19438 - . gene_id "HERVH_2p12h"; transcript_id "HERVH_2p12h"; locus "HERVH_2p12h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0150"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 80879796 80880161 1830 - . gene_id "HERVH_2p12h"; transcript_id "HERVH_2p12h"; locus "HERVH_2p12h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0150"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3_2p12 ### chr2 rmsk gene 81387539 81390129 . + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0023"; model_cov "2012"; model_pct "22.6"; chr2 rmsk exon 81387539 81389024 6263 + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0023"; repClass "LTR"; repEnd "6755"; repFamily "ERV1"; repLeft "-2164"; repStart "5210"; chr2 rmsk exon 81389030 81389282 1046 + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0023"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6655"; chr2 rmsk exon 81389499 81389757 1352 + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0023"; repClass "LTR"; repEnd "8914"; repFamily "ERV1"; repLeft "-5"; repStart "8704"; chr2 rmsk exon 81389763 81389829 460 + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0023"; repClass "LTR"; repEnd "67"; repFamily "ERV1"; repLeft "-661"; repStart "1"; chr2 rmsk exon 81389834 81390129 1708 + . gene_id "HUERSP3_2p12"; transcript_id "HUERSP3_2p12"; locus "HUERSP3_2p12"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0023"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "338"; ### HERVIP10F_2p12 ### chr2 rmsk gene 81649960 81658684 . - . gene_id "HERVIP10F_2p12"; transcript_id "HERVIP10F_2p12"; locus "HERVIP10F_2p12"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0014"; model_cov "7736"; model_pct "100.0"; chr2 rmsk exon 81649960 81650394 2949 - . gene_id "HERVIP10F_2p12"; transcript_id "HERVIP10F_2p12"; locus "HERVIP10F_2p12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0014"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "10"; repStart "0"; chr2 rmsk exon 81650398 81658130 62323 - . gene_id "HERVIP10F_2p12"; transcript_id "HERVIP10F_2p12"; locus "HERVIP10F_2p12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0014"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 81658131 81658684 3247 - . gene_id "HERVIP10F_2p12"; transcript_id "HERVIP10F_2p12"; locus "HERVIP10F_2p12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0014"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_2p12e ### chr2 rmsk gene 81710634 81713680 . - . gene_id "HERVL_2p12e"; transcript_id "HERVL_2p12e"; locus "HERVL_2p12e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0152"; model_cov "2122"; model_pct "37.5"; chr2 rmsk exon 81710634 81711001 2641 - . gene_id "HERVL_2p12e"; transcript_id "HERVL_2p12e"; locus "HERVL_2p12e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0152"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; chr2 rmsk exon 81711629 81713680 17153 - . gene_id "HERVL_2p12e"; transcript_id "HERVL_2p12e"; locus "HERVL_2p12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0152"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3532"; repStart "0"; ### HERVK14C_2p12 ### chr2 rmsk gene 82022661 82031279 . + . gene_id "HERVK14C_2p12"; transcript_id "HERVK14C_2p12"; locus "HERVK14C_2p12"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0004"; model_cov "7431"; model_pct "100.0"; chr2 rmsk exon 82022661 82023243 4809 + . gene_id "HERVK14C_2p12"; transcript_id "HERVK14C_2p12"; locus "HERVK14C_2p12"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0004"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 82023245 82027325 59220 + . gene_id "HERVK14C_2p12"; transcript_id "HERVK14C_2p12"; locus "HERVK14C_2p12"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0004"; repClass "LTR"; repEnd "4093"; repFamily "ERVK"; repLeft "-3341"; repStart "2"; chr2 rmsk exon 82027367 82030697 59220 + . gene_id "HERVK14C_2p12"; transcript_id "HERVK14C_2p12"; locus "HERVK14C_2p12"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0004"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "4094"; chr2 rmsk exon 82030698 82031279 4620 + . gene_id "HERVK14C_2p12"; transcript_id "HERVK14C_2p12"; locus "HERVK14C_2p12"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0004"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER41_2p12 ### chr2 rmsk gene 82129468 82132637 . + . gene_id "MER41_2p12"; transcript_id "MER41_2p12"; locus "MER41_2p12"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0048"; model_cov "1790"; model_pct "30.1"; chr2 rmsk exon 82129468 82130015 4144 + . gene_id "MER41_2p12"; transcript_id "MER41_2p12"; locus "MER41_2p12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0048"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 82130383 82132067 7364 + . gene_id "MER41_2p12"; transcript_id "MER41_2p12"; locus "MER41_2p12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0048"; repClass "LTR"; repEnd "5910"; repFamily "ERV1"; repLeft "-36"; repStart "4120"; chr2 rmsk exon 82132084 82132637 4255 + . gene_id "MER41_2p12"; transcript_id "MER41_2p12"; locus "MER41_2p12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0048"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_2p12b ### chr2 rmsk gene 82366031 82368877 . - . gene_id "MER4_2p12b"; transcript_id "MER4_2p12b"; locus "MER4_2p12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0083"; model_cov "1983"; model_pct "30.1"; chr2 rmsk exon 82366031 82367205 5920 - . gene_id "MER4_2p12b"; transcript_id "MER4_2p12b"; locus "MER4_2p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0083"; repClass "LTR"; repEnd "5612"; repFamily "ERV1"; repLeft "4342"; repStart "-986"; chr2 rmsk exon 82367793 82368119 3870 - . gene_id "MER4_2p12b"; transcript_id "MER4_2p12b"; locus "MER4_2p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0083"; repClass "LTR"; repEnd "2819"; repFamily "ERV1"; repLeft "2411"; repStart "-3779"; chr2 rmsk exon 82368126 82368412 1806 - . gene_id "MER4_2p12b"; transcript_id "MER4_2p12b"; locus "MER4_2p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0083"; repClass "LTR"; repEnd "306"; repFamily "ERV1"; repLeft "1"; repStart "-6292"; chr2 rmsk exon 82368416 82368877 3090 - . gene_id "MER4_2p12b"; transcript_id "MER4_2p12b"; locus "MER4_2p12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0083"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_2p12b ### chr2 rmsk gene 82460842 82461813 . + . gene_id "ERVLB4_2p12b"; transcript_id "ERVLB4_2p12b"; locus "ERVLB4_2p12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0175"; model_cov "1007"; model_pct "17.6"; chr2 rmsk exon 82460842 82461059 1232 + . gene_id "ERVLB4_2p12b"; transcript_id "ERVLB4_2p12b"; locus "ERVLB4_2p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0175"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "-5489"; repStart "1"; chr2 rmsk exon 82461096 82461813 3476 + . gene_id "ERVLB4_2p12b"; transcript_id "ERVLB4_2p12b"; locus "ERVLB4_2p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0175"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "-4578"; repStart "353"; ### ERVLE_2p12g ### chr2 rmsk gene 82476538 82478547 . - . gene_id "ERVLE_2p12g"; transcript_id "ERVLE_2p12g"; locus "ERVLE_2p12g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0467"; model_cov "1050"; model_pct "18.5"; chr2 rmsk exon 82476538 82476686 307 - . gene_id "ERVLE_2p12g"; transcript_id "ERVLE_2p12g"; locus "ERVLE_2p12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0467"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "2019"; repStart "-3495"; chr2 rmsk exon 82477651 82478547 827 - . gene_id "ERVLE_2p12g"; transcript_id "ERVLE_2p12g"; locus "ERVLE_2p12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0467"; repClass "LTR"; repEnd "1973"; repFamily "ERVL"; repLeft "1076"; repStart "-3694"; ### ERVLE_2p12h ### chr2 rmsk gene 82496315 82497445 . + . gene_id "ERVLE_2p12h"; transcript_id "ERVLE_2p12h"; locus "ERVLE_2p12h"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0468"; model_cov "829"; model_pct "14.6"; chr2 rmsk exon 82496315 82497124 2338 + . gene_id "ERVLE_2p12h"; transcript_id "ERVLE_2p12h"; locus "ERVLE_2p12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0468"; repClass "LTR"; repEnd "5430"; repFamily "ERVL"; repLeft "-237"; repStart "4601"; chr2 rmsk exon 82497348 82497445 236 + . gene_id "ERVLE_2p12h"; transcript_id "ERVLE_2p12h"; locus "ERVLE_2p12h"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0468"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "-506"; repStart "30"; ### HERVP71A_2p12 ### chr2 rmsk gene 82778297 82780489 . + . gene_id "HERVP71A_2p12"; transcript_id "HERVP71A_2p12"; locus "HERVP71A_2p12"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0012"; model_cov "1732"; model_pct "22.8"; chr2 rmsk exon 82778297 82780022 12135 + . gene_id "HERVP71A_2p12"; transcript_id "HERVP71A_2p12"; locus "HERVP71A_2p12"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0012"; repClass "LTR"; repEnd "7569"; repFamily "ERV1"; repLeft "-21"; repStart "5837"; chr2 rmsk exon 82780035 82780489 3326 + . gene_id "HERVP71A_2p12"; transcript_id "HERVP71A_2p12"; locus "HERVP71A_2p12"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0012"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_2p11.2a ### chr2 rmsk gene 83115153 83116354 . - . gene_id "ERV316A3_2p11.2a"; transcript_id "ERV316A3_2p11.2a"; locus "ERV316A3_2p11.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0263"; model_cov "1089"; model_pct "20.8"; chr2 rmsk exon 83115153 83116015 1083 - . gene_id "ERV316A3_2p11.2a"; transcript_id "ERV316A3_2p11.2a"; locus "ERV316A3_2p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0263"; repClass "LTR"; repEnd "4465"; repFamily "ERVL"; repLeft "3586"; repStart "-761"; chr2 rmsk exon 83116145 83116354 309 - . gene_id "ERV316A3_2p11.2a"; transcript_id "ERV316A3_2p11.2a"; locus "ERV316A3_2p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0263"; repClass "LTR"; repEnd "3112"; repFamily "ERVL"; repLeft "2902"; repStart "-2114"; ### HERVL_2p11.2a ### chr2 rmsk gene 83159688 83162723 . - . gene_id "HERVL_2p11.2a"; transcript_id "HERVL_2p11.2a"; locus "HERVL_2p11.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0153"; model_cov "2310"; model_pct "40.9"; chr2 rmsk exon 83159688 83160152 3107 - . gene_id "HERVL_2p11.2a"; transcript_id "HERVL_2p11.2a"; locus "HERVL_2p11.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0153"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 83160163 83160224 16741 - . gene_id "HERVL_2p11.2a"; transcript_id "HERVL_2p11.2a"; locus "HERVL_2p11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0153"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "5584"; repStart "-10"; chr2 rmsk exon 83160521 83162723 16741 - . gene_id "HERVL_2p11.2a"; transcript_id "HERVL_2p11.2a"; locus "HERVL_2p11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0153"; repClass "LTR"; repEnd "5583"; repFamily "ERVL"; repLeft "3333"; repStart "-71"; ### ERVLE_2p11.2a ### chr2 rmsk gene 83534618 83536100 . + . gene_id "ERVLE_2p11.2a"; transcript_id "ERVLE_2p11.2a"; locus "ERVLE_2p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0469"; model_cov "913"; model_pct "16.1"; chr2 rmsk exon 83534618 83534954 689 + . gene_id "ERVLE_2p11.2a"; transcript_id "ERVLE_2p11.2a"; locus "ERVLE_2p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0469"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "-4885"; repStart "433"; chr2 rmsk exon 83534956 83535126 503 + . gene_id "ERVLE_2p11.2a"; transcript_id "ERVLE_2p11.2a"; locus "ERVLE_2p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0469"; repClass "LTR"; repEnd "1585"; repFamily "ERVL"; repLeft "-4082"; repStart "1401"; chr2 rmsk exon 83535740 83536100 779 + . gene_id "ERVLE_2p11.2a"; transcript_id "ERVLE_2p11.2a"; locus "ERVLE_2p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0469"; repClass "LTR"; repEnd "1960"; repFamily "ERVL"; repLeft "-3707"; repStart "1580"; ### HERVH_2p11.2a ### chr2 rmsk gene 83788947 83792700 . - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0151"; model_cov "3525"; model_pct "45.7"; chr2 rmsk exon 83788947 83789357 2597 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 83789358 83789736 2385 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 83789735 83789951 1404 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 83789953 83790601 4351 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 83790604 83791103 3236 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 83791094 83791241 853 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 83791236 83792700 13338 - . gene_id "HERVH_2p11.2a"; transcript_id "HERVH_2p11.2a"; locus "HERVH_2p11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0151"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1384"; repStart "-4726"; ### HERVH_2p11.2b ### chr2 rmsk gene 83792810 83794480 . - . gene_id "HERVH_2p11.2b"; transcript_id "HERVH_2p11.2b"; locus "HERVH_2p11.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0152"; model_cov "1382"; model_pct "17.9"; chr2 rmsk exon 83792810 83794070 13338 - . gene_id "HERVH_2p11.2b"; transcript_id "HERVH_2p11.2b"; locus "HERVH_2p11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0152"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1605"; repStart "-4726"; chr2 rmsk exon 83794073 83794480 2522 - . gene_id "HERVH_2p11.2b"; transcript_id "HERVH_2p11.2b"; locus "HERVH_2p11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0152"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFC1_2p11.2 ### chr2 rmsk gene 83873933 83879494 . - . gene_id "HERVFC1_2p11.2"; transcript_id "HERVFC1_2p11.2"; locus "HERVFC1_2p11.2"; category "prototype"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0001"; model_cov "4628"; model_pct "100.0"; chr2 rmsk exon 83873933 83874408 3820 - . gene_id "HERVFC1_2p11.2"; transcript_id "HERVFC1_2p11.2"; locus "HERVFC1_2p11.2"; repName "HERV-Fc1_LTR3"; geneRegion "ltr"; locid "HERV-Fc1-int_0001"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 83874409 83879018 39345 - . gene_id "HERVFC1_2p11.2"; transcript_id "HERVFC1_2p11.2"; locus "HERVFC1_2p11.2"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0001"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 83879019 83879494 3706 - . gene_id "HERVFC1_2p11.2"; transcript_id "HERVFC1_2p11.2"; locus "HERVFC1_2p11.2"; repName "HERV-Fc1_LTR3"; geneRegion "ltr"; locid "HERV-Fc1-int_0001"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_2p11.2 ### chr2 rmsk gene 84464407 84470759 . - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0049"; model_cov "5167"; model_pct "86.9"; chr2 rmsk exon 84464407 84464960 4707 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0049"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 84464961 84465213 11858 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5697"; repStart "-2"; chr2 rmsk exon 84465521 84467014 11858 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "5696"; repFamily "ERV1"; repLeft "4151"; repStart "-250"; chr2 rmsk exon 84467014 84468383 5041 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "4095"; repFamily "ERV1"; repLeft "2687"; repStart "-1851"; chr2 rmsk exon 84468376 84468430 308 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "2224"; repFamily "ERV1"; repLeft "2167"; repStart "-3722"; chr2 rmsk exon 84468427 84468561 796 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1866"; repStart "-3929"; chr2 rmsk exon 84468561 84470159 5337 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0049"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "3"; repStart "-4184"; chr2 rmsk exon 84470246 84470759 3789 - . gene_id "MER41_2p11.2"; transcript_id "MER41_2p11.2"; locus "MER41_2p11.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0049"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "37"; repStart "0"; ### HML1_2p11.2 ### chr2 rmsk gene 84470760 84477426 . - . gene_id "HML1_2p11.2"; transcript_id "HML1_2p11.2"; locus "HML1_2p11.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0008"; model_cov "6021"; model_pct "98.8"; chr2 rmsk exon 84470760 84471171 2216 - . gene_id "HML1_2p11.2"; transcript_id "HML1_2p11.2"; locus "HML1_2p11.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0008"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 84471175 84471307 840 - . gene_id "HML1_2p11.2"; transcript_id "HML1_2p11.2"; locus "HML1_2p11.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0008"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5975"; repStart "0"; chr2 rmsk exon 84471381 84477034 42370 - . gene_id "HML1_2p11.2"; transcript_id "HML1_2p11.2"; locus "HML1_2p11.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0008"; repClass "LTR"; repEnd "5901"; repFamily "ERVK"; repLeft "1"; repStart "-195"; chr2 rmsk exon 84477047 84477426 1919 - . gene_id "HML1_2p11.2"; transcript_id "HML1_2p11.2"; locus "HML1_2p11.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0008"; repClass "LTR"; repEnd "578"; repFamily "ERVK"; repLeft "1"; repStart "-30"; ### MER101_2p11.2 ### chr2 rmsk gene 84923159 84923605 . + . gene_id "MER101_2p11.2"; transcript_id "MER101_2p11.2"; locus "MER101_2p11.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0053"; model_cov "823"; model_pct "12.4"; chr2 rmsk exon 84923159 84923605 1358 + . gene_id "MER101_2p11.2"; transcript_id "MER101_2p11.2"; locus "MER101_2p11.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0053"; repClass "LTR"; repEnd "2501"; repFamily "ERV1"; repLeft "-4138"; repStart "1678"; ### ERV316A3_2p11.2b ### chr2 rmsk gene 85111587 85115113 . + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0265"; model_cov "2671"; model_pct "51.1"; chr2 rmsk exon 85111587 85111813 779 + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0265"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "-2116"; repStart "2888"; chr2 rmsk exon 85111808 85112715 6292 + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0265"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-1490"; repStart "2771"; chr2 rmsk exon 85112933 85113657 6292 + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0265"; repClass "LTR"; repEnd "4439"; repFamily "ERVL"; repLeft "-787"; repStart "3737"; chr2 rmsk exon 85113958 85114768 6292 + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0265"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "4440"; chr2 rmsk exon 85114773 85115113 1492 + . gene_id "ERV316A3_2p11.2b"; transcript_id "ERV316A3_2p11.2b"; locus "ERV316A3_2p11.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0265"; repClass "LTR"; repEnd "339"; repFamily "ERVL"; repLeft "-99"; repStart "1"; ### MER4_2p11.2a ### chr2 rmsk gene 85378291 85382157 . - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0084"; model_cov "2481"; model_pct "37.6"; chr2 rmsk exon 85378291 85378752 3459 - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0084"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 85378790 85379194 15801 - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0084"; repClass "LTR"; repEnd "6567"; repFamily "ERV1"; repLeft "6158"; repStart "-31"; chr2 rmsk exon 85379504 85380521 15801 - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0084"; repClass "LTR"; repEnd "6157"; repFamily "ERV1"; repLeft "5104"; repStart "-441"; chr2 rmsk exon 85380825 85381835 15801 - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0084"; repClass "LTR"; repEnd "5103"; repFamily "ERV1"; repLeft "4084"; repStart "-1495"; chr2 rmsk exon 85382141 85382157 15801 - . gene_id "MER4_2p11.2a"; transcript_id "MER4_2p11.2a"; locus "MER4_2p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0084"; repClass "LTR"; repEnd "4083"; repFamily "ERV1"; repLeft "4083"; repStart "-2515"; ### ERVLE_2p11.2b ### chr2 rmsk gene 85651526 85652725 . - . gene_id "ERVLE_2p11.2b"; transcript_id "ERVLE_2p11.2b"; locus "ERVLE_2p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0471"; model_cov "606"; model_pct "10.7"; chr2 rmsk exon 85651526 85651710 1953 - . gene_id "ERVLE_2p11.2b"; transcript_id "ERVLE_2p11.2b"; locus "ERVLE_2p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0471"; repClass "LTR"; repEnd "2949"; repFamily "ERVL"; repLeft "2768"; repStart "-2718"; chr2 rmsk exon 85652021 85652391 1953 - . gene_id "ERVLE_2p11.2b"; transcript_id "ERVLE_2p11.2b"; locus "ERVLE_2p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0471"; repClass "LTR"; repEnd "2767"; repFamily "ERVL"; repLeft "2409"; repStart "-2900"; chr2 rmsk exon 85652658 85652725 1953 - . gene_id "ERVLE_2p11.2b"; transcript_id "ERVLE_2p11.2b"; locus "ERVLE_2p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0471"; repClass "LTR"; repEnd "2408"; repFamily "ERVL"; repLeft "2341"; repStart "-3259"; ### ERVLE_2p11.2c ### chr2 rmsk gene 86275100 86278417 . + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0473"; model_cov "1938"; model_pct "34.2"; chr2 rmsk exon 86275100 86275300 523 + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0473"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3525"; chr2 rmsk exon 86275848 86276761 3471 + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0473"; repClass "LTR"; repEnd "4732"; repFamily "ERVL"; repLeft "-935"; repStart "3786"; chr2 rmsk exon 86276926 86277278 3471 + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0473"; repClass "LTR"; repEnd "5072"; repFamily "ERVL"; repLeft "-595"; repStart "4733"; chr2 rmsk exon 86277573 86277731 3471 + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0473"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-443"; repStart "5073"; chr2 rmsk exon 86278171 86278417 275 + . gene_id "ERVLE_2p11.2c"; transcript_id "ERVLE_2p11.2c"; locus "ERVLE_2p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0473"; repClass "LTR"; repEnd "5487"; repFamily "ERVL"; repLeft "-180"; repStart "5227"; ### ERVLE_2p11.2d ### chr2 rmsk gene 86392598 86393940 . - . gene_id "ERVLE_2p11.2d"; transcript_id "ERVLE_2p11.2d"; locus "ERVLE_2p11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0474"; model_cov "1371"; model_pct "24.2"; chr2 rmsk exon 86392598 86393940 3996 - . gene_id "ERVLE_2p11.2d"; transcript_id "ERVLE_2p11.2d"; locus "ERVLE_2p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0474"; repClass "LTR"; repEnd "4646"; repFamily "ERVL"; repLeft "3275"; repStart "-1021"; ### HERVE_2p11.2 ### chr2 rmsk gene 87203473 87205281 . - . gene_id "HERVE_2p11.2"; transcript_id "HERVE_2p11.2"; locus "HERVE_2p11.2"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0010"; model_cov "1633"; model_pct "20.9"; chr2 rmsk exon 87203473 87203518 295 - . gene_id "HERVE_2p11.2"; transcript_id "HERVE_2p11.2"; locus "HERVE_2p11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0010"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "391"; repStart "-65"; chr2 rmsk exon 87203520 87205171 9082 - . gene_id "HERVE_2p11.2"; transcript_id "HERVE_2p11.2"; locus "HERVE_2p11.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0010"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "1"; repStart "-6179"; chr2 rmsk exon 87205172 87205281 768 - . gene_id "HERVE_2p11.2"; transcript_id "HERVE_2p11.2"; locus "HERVE_2p11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0010"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "391"; repStart "0"; ### ERVLB4_2p11.2a ### chr2 rmsk gene 87381965 87383077 . + . gene_id "ERVLB4_2p11.2a"; transcript_id "ERVLB4_2p11.2a"; locus "ERVLB4_2p11.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0178"; model_cov "1019"; model_pct "17.8"; chr2 rmsk exon 87381965 87382154 1037 + . gene_id "ERVLB4_2p11.2a"; transcript_id "ERVLB4_2p11.2a"; locus "ERVLB4_2p11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0178"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr2 rmsk exon 87382271 87383077 3475 + . gene_id "ERVLB4_2p11.2a"; transcript_id "ERVLB4_2p11.2a"; locus "ERVLB4_2p11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0178"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### ERVLB4_2p11.2b ### chr2 rmsk gene 87862992 87864698 . + . gene_id "ERVLB4_2p11.2b"; transcript_id "ERVLB4_2p11.2b"; locus "ERVLB4_2p11.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0179"; model_cov "1026"; model_pct "18.0"; chr2 rmsk exon 87862992 87864042 5120 + . gene_id "ERVLB4_2p11.2b"; transcript_id "ERVLB4_2p11.2b"; locus "ERVLB4_2p11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0179"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "-5"; repStart "4683"; chr2 rmsk exon 87864048 87864566 2052 + . gene_id "ERVLB4_2p11.2b"; transcript_id "ERVLB4_2p11.2b"; locus "ERVLB4_2p11.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0179"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr2 rmsk exon 87864661 87864698 2052 + . gene_id "ERVLB4_2p11.2b"; transcript_id "ERVLB4_2p11.2b"; locus "ERVLB4_2p11.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0179"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-8"; repStart "514"; ### HUERSP2_2p11.2 ### chr2 rmsk gene 87866475 87867337 . + . gene_id "HUERSP2_2p11.2"; transcript_id "HUERSP2_2p11.2"; locus "HUERSP2_2p11.2"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0021"; model_cov "755"; model_pct "24.4"; chr2 rmsk exon 87866475 87866697 997 + . gene_id "HUERSP2_2p11.2"; transcript_id "HUERSP2_2p11.2"; locus "HUERSP2_2p11.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0021"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "-2578"; repStart "289"; chr2 rmsk exon 87866801 87867337 2151 + . gene_id "HUERSP2_2p11.2"; transcript_id "HUERSP2_2p11.2"; locus "HUERSP2_2p11.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0021"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "-1992"; repStart "562"; ### MER4_2p11.2b ### chr2 rmsk gene 87890622 87891970 . + . gene_id "MER4_2p11.2b"; transcript_id "MER4_2p11.2b"; locus "MER4_2p11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0086"; model_cov "945"; model_pct "14.3"; chr2 rmsk exon 87890622 87891142 2213 + . gene_id "MER4_2p11.2b"; transcript_id "MER4_2p11.2b"; locus "MER4_2p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0086"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "36"; chr2 rmsk exon 87891130 87891216 257 + . gene_id "MER4_2p11.2b"; transcript_id "MER4_2p11.2b"; locus "MER4_2p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0086"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr2 rmsk exon 87891315 87891516 868 + . gene_id "MER4_2p11.2b"; transcript_id "MER4_2p11.2b"; locus "MER4_2p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0086"; repClass "LTR"; repEnd "1487"; repFamily "ERV1"; repLeft "-5111"; repStart "1275"; chr2 rmsk exon 87891518 87891970 3003 + . gene_id "MER4_2p11.2b"; transcript_id "MER4_2p11.2b"; locus "MER4_2p11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0086"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERV316A3_2p11.2c ### chr2 rmsk gene 88205171 88207766 . + . gene_id "ERV316A3_2p11.2c"; transcript_id "ERV316A3_2p11.2c"; locus "ERV316A3_2p11.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0266"; model_cov "1432"; model_pct "27.4"; chr2 rmsk exon 88205171 88206229 3681 + . gene_id "ERV316A3_2p11.2c"; transcript_id "ERV316A3_2p11.2c"; locus "ERV316A3_2p11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0266"; repClass "LTR"; repEnd "3574"; repFamily "ERVL"; repLeft "-1652"; repStart "2556"; chr2 rmsk exon 88207042 88207240 3681 + . gene_id "ERV316A3_2p11.2c"; transcript_id "ERV316A3_2p11.2c"; locus "ERV316A3_2p11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0266"; repClass "LTR"; repEnd "3771"; repFamily "ERVL"; repLeft "-1455"; repStart "3575"; chr2 rmsk exon 88207539 88207766 3681 + . gene_id "ERV316A3_2p11.2c"; transcript_id "ERV316A3_2p11.2c"; locus "ERV316A3_2p11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0266"; repClass "LTR"; repEnd "3990"; repFamily "ERVL"; repLeft "-1236"; repStart "3772"; ### ERVLE_2p11.2e ### chr2 rmsk gene 88221959 88223713 . - . gene_id "ERVLE_2p11.2e"; transcript_id "ERVLE_2p11.2e"; locus "ERVLE_2p11.2e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0475"; model_cov "1076"; model_pct "19.0"; chr2 rmsk exon 88221959 88222297 1846 - . gene_id "ERVLE_2p11.2e"; transcript_id "ERVLE_2p11.2e"; locus "ERVLE_2p11.2e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0475"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-270"; chr2 rmsk exon 88222301 88223082 2263 - . gene_id "ERVLE_2p11.2e"; transcript_id "ERVLE_2p11.2e"; locus "ERVLE_2p11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0475"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "4799"; repStart "-3"; chr2 rmsk exon 88223503 88223713 2263 - . gene_id "ERVLE_2p11.2e"; transcript_id "ERVLE_2p11.2e"; locus "ERVLE_2p11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0475"; repClass "LTR"; repEnd "4798"; repFamily "ERVL"; repLeft "4587"; repStart "-869"; ### ERVLE_2p11.2f ### chr2 rmsk gene 88334895 88340398 . - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0476"; model_cov "2780"; model_pct "49.1"; chr2 rmsk exon 88334895 88335055 2437 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "5367"; repStart "-140"; chr2 rmsk exon 88335183 88335527 2437 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "5366"; repFamily "ERVL"; repLeft "5044"; repStart "-301"; chr2 rmsk exon 88336177 88336454 2437 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "4769"; repStart "-624"; chr2 rmsk exon 88336764 88336912 2437 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "4768"; repFamily "ERVL"; repLeft "4616"; repStart "-899"; chr2 rmsk exon 88337074 88338269 4128 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "3079"; repFamily "ERVL"; repLeft "1843"; repStart "-2588"; chr2 rmsk exon 88339339 88339547 604 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "1602"; repFamily "ERVL"; repLeft "1387"; repStart "-4065"; chr2 rmsk exon 88339791 88339899 350 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "1098"; repFamily "ERVL"; repLeft "987"; repStart "-4569"; chr2 rmsk exon 88340093 88340398 764 - . gene_id "ERVLE_2p11.2f"; transcript_id "ERVLE_2p11.2f"; locus "ERVLE_2p11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0476"; repClass "LTR"; repEnd "701"; repFamily "ERVL"; repLeft "391"; repStart "-4966"; ### ERVLB4_2p11.2c ### chr2 rmsk gene 88419486 88422720 . + . gene_id "ERVLB4_2p11.2c"; transcript_id "ERVLB4_2p11.2c"; locus "ERVLB4_2p11.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0180"; model_cov "992"; model_pct "17.4"; chr2 rmsk exon 88419486 88420110 794 + . gene_id "ERVLB4_2p11.2c"; transcript_id "ERVLB4_2p11.2c"; locus "ERVLB4_2p11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0180"; repClass "LTR"; repEnd "2970"; repFamily "ERVL"; repLeft "-2744"; repStart "2329"; chr2 rmsk exon 88421631 88421864 426 + . gene_id "ERVLB4_2p11.2c"; transcript_id "ERVLB4_2p11.2c"; locus "ERVLB4_2p11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0180"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-2436"; repStart "3033"; chr2 rmsk exon 88422614 88422720 344 + . gene_id "ERVLB4_2p11.2c"; transcript_id "ERVLB4_2p11.2c"; locus "ERVLB4_2p11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0180"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-1139"; repStart "4469"; ### HERVL_2p11.2b ### chr2 rmsk gene 88581793 88582614 . + . gene_id "HERVL_2p11.2b"; transcript_id "HERVL_2p11.2b"; locus "HERVL_2p11.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0154"; model_cov "866"; model_pct "15.3"; chr2 rmsk exon 88581793 88582614 3911 + . gene_id "HERVL_2p11.2b"; transcript_id "HERVL_2p11.2b"; locus "HERVL_2p11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0154"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-259"; repStart "4529"; ### HERVFRD_2p11.2 ### chr2 rmsk gene 88679963 88686725 . + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0027"; model_cov "5680"; model_pct "78.8"; chr2 rmsk exon 88679963 88680665 4099 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0027"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr2 rmsk exon 88680666 88681484 7195 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0027"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-6365"; repStart "7"; chr2 rmsk exon 88681524 88682432 7195 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0027"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "841"; chr2 rmsk exon 88682429 88684079 5336 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0027"; repClass "LTR"; repEnd "4356"; repFamily "ERV1"; repLeft "-2849"; repStart "2788"; chr2 rmsk exon 88684076 88685017 8626 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0027"; repClass "LTR"; repEnd "5875"; repFamily "ERV1"; repLeft "-1330"; repStart "4926"; chr2 rmsk exon 88685328 88686008 8626 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0027"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "5876"; chr2 rmsk exon 88686009 88686725 4163 + . gene_id "HERVFRD_2p11.2"; transcript_id "HERVFRD_2p11.2"; locus "HERVFRD_2p11.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0027"; repClass "LTR"; repEnd "725"; repFamily "ERV1"; repLeft "-9"; repStart "1"; ### MER4_2p11.2c ### chr2 rmsk gene 88717214 88722474 . - . gene_id "MER4_2p11.2c"; transcript_id "MER4_2p11.2c"; locus "MER4_2p11.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0087"; model_cov "3599"; model_pct "54.5"; chr2 rmsk exon 88717214 88717667 3513 - . gene_id "MER4_2p11.2c"; transcript_id "MER4_2p11.2c"; locus "MER4_2p11.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0087"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 88717675 88720362 17300 - . gene_id "MER4_2p11.2c"; transcript_id "MER4_2p11.2c"; locus "MER4_2p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0087"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3836"; repStart "-2"; chr2 rmsk exon 88720361 88720575 855 - . gene_id "MER4_2p11.2c"; transcript_id "MER4_2p11.2c"; locus "MER4_2p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0087"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3461"; repStart "-2917"; chr2 rmsk exon 88721809 88722474 2338 - . gene_id "MER4_2p11.2c"; transcript_id "MER4_2p11.2c"; locus "MER4_2p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0087"; repClass "LTR"; repEnd "2197"; repFamily "ERV1"; repLeft "1578"; repStart "-4401"; ### MER4_2p11.2d ### chr2 rmsk gene 88722641 88724123 . - . gene_id "MER4_2p11.2d"; transcript_id "MER4_2p11.2d"; locus "MER4_2p11.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0088"; model_cov "1001"; model_pct "15.2"; chr2 rmsk exon 88722641 88722949 1321 - . gene_id "MER4_2p11.2d"; transcript_id "MER4_2p11.2d"; locus "MER4_2p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0088"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2112"; repStart "-4170"; chr2 rmsk exon 88723095 88723667 2525 - . gene_id "MER4_2p11.2d"; transcript_id "MER4_2p11.2d"; locus "MER4_2p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0088"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr2 rmsk exon 88723671 88724123 3400 - . gene_id "MER4_2p11.2d"; transcript_id "MER4_2p11.2d"; locus "MER4_2p11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0088"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_2p11.2c ### chr2 rmsk gene 89050122 89056967 . + . gene_id "HERVH_2p11.2c"; transcript_id "HERVH_2p11.2c"; locus "HERVH_2p11.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0153"; model_cov "5919"; model_pct "76.7"; chr2 rmsk exon 89050122 89050956 32037 + . gene_id "HERVH_2p11.2c"; transcript_id "HERVH_2p11.2c"; locus "HERVH_2p11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0153"; repClass "LTR"; repEnd "2669"; repFamily "ERV1"; repLeft "-5044"; repStart "1793"; chr2 rmsk exon 89051426 89056523 32037 + . gene_id "HERVH_2p11.2c"; transcript_id "HERVH_2p11.2c"; locus "HERVH_2p11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0153"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "2670"; chr2 rmsk exon 89056524 89056967 2487 + . gene_id "HERVH_2p11.2c"; transcript_id "HERVH_2p11.2c"; locus "HERVH_2p11.2c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0153"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2p11.2g ### chr2 rmsk gene 90020655 90021281 . - . gene_id "ERVLE_2p11.2g"; transcript_id "ERVLE_2p11.2g"; locus "ERVLE_2p11.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0481"; model_cov "707"; model_pct "12.5"; chr2 rmsk exon 90020655 90021281 1049 - . gene_id "ERVLE_2p11.2g"; transcript_id "ERVLE_2p11.2g"; locus "ERVLE_2p11.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0481"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "2569"; repStart "-2391"; ### ERVLE_2p11.2h ### chr2 rmsk gene 90068706 90069348 . - . gene_id "ERVLE_2p11.2h"; transcript_id "ERVLE_2p11.2h"; locus "ERVLE_2p11.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0482"; model_cov "642"; model_pct "11.3"; chr2 rmsk exon 90068706 90069348 1051 - . gene_id "ERVLE_2p11.2h"; transcript_id "ERVLE_2p11.2h"; locus "ERVLE_2p11.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0482"; repClass "LTR"; repEnd "3187"; repFamily "ERVL"; repLeft "2545"; repStart "-2480"; ### HERVH_2p11.2d ### chr2 rmsk gene 90143601 90150444 . - . gene_id "HERVH_2p11.2d"; transcript_id "HERVH_2p11.2d"; locus "HERVH_2p11.2d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0154"; model_cov "5919"; model_pct "76.7"; chr2 rmsk exon 90143601 90144044 2464 - . gene_id "HERVH_2p11.2d"; transcript_id "HERVH_2p11.2d"; locus "HERVH_2p11.2d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0154"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 90144045 90149139 31818 - . gene_id "HERVH_2p11.2d"; transcript_id "HERVH_2p11.2d"; locus "HERVH_2p11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0154"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "2670"; repStart "0"; chr2 rmsk exon 90149610 90150444 31818 - . gene_id "HERVH_2p11.2d"; transcript_id "HERVH_2p11.2d"; locus "HERVH_2p11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0154"; repClass "LTR"; repEnd "2669"; repFamily "ERV1"; repLeft "1793"; repStart "-5044"; ### ERVLB4_2p11.2d ### chr2 rmsk gene 90273861 90274973 . + . gene_id "ERVLB4_2p11.2d"; transcript_id "ERVLB4_2p11.2d"; locus "ERVLB4_2p11.2d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0185"; model_cov "1019"; model_pct "17.8"; chr2 rmsk exon 90273861 90274050 1055 + . gene_id "ERVLB4_2p11.2d"; transcript_id "ERVLB4_2p11.2d"; locus "ERVLB4_2p11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0185"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr2 rmsk exon 90274167 90274973 3475 + . gene_id "ERVLB4_2p11.2d"; transcript_id "ERVLB4_2p11.2d"; locus "ERVLB4_2p11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0185"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### ERVLB4_2p11.2e ### chr2 rmsk gene 91541733 91542845 . - . gene_id "ERVLB4_2p11.2e"; transcript_id "ERVLB4_2p11.2e"; locus "ERVLB4_2p11.2e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0187"; model_cov "1019"; model_pct "17.8"; chr2 rmsk exon 91541733 91542539 3139 - . gene_id "ERVLB4_2p11.2e"; transcript_id "ERVLB4_2p11.2e"; locus "ERVLB4_2p11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0187"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr2 rmsk exon 91542656 91542845 946 - . gene_id "ERVLB4_2p11.2e"; transcript_id "ERVLB4_2p11.2e"; locus "ERVLB4_2p11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0187"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; ### HERVL_2p11.1a ### chr2 rmsk gene 91819227 91823296 . + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0160"; model_cov "3246"; model_pct "57.4"; chr2 rmsk exon 91819227 91819611 2641 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr2 rmsk exon 91819675 91819723 2641 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; chr2 rmsk exon 91819724 91819986 1686 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "-5391"; repStart "1"; chr2 rmsk exon 91819976 91820471 3332 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "1812"; repFamily "ERVL"; repLeft "-3842"; repStart "1317"; chr2 rmsk exon 91820470 91822912 13719 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3165"; chr2 rmsk exon 91822913 91823296 2924 + . gene_id "HERVL_2p11.1a"; transcript_id "HERVL_2p11.1a"; locus "HERVL_2p11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0160"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "-61"; repStart "1"; ### ERV316A3_2p11.1a ### chr2 rmsk gene 91868944 91870258 . + . gene_id "ERV316A3_2p11.1a"; transcript_id "ERV316A3_2p11.1a"; locus "ERV316A3_2p11.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0271"; model_cov "786"; model_pct "15.0"; chr2 rmsk exon 91868944 91869096 320 + . gene_id "ERV316A3_2p11.1a"; transcript_id "ERV316A3_2p11.1a"; locus "ERV316A3_2p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0271"; repClass "LTR"; repEnd "2301"; repFamily "ERVL"; repLeft "-2925"; repStart "2145"; chr2 rmsk exon 91869248 91869722 1061 + . gene_id "ERV316A3_2p11.1a"; transcript_id "ERV316A3_2p11.1a"; locus "ERV316A3_2p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0271"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2505"; chr2 rmsk exon 91870090 91870258 1061 + . gene_id "ERV316A3_2p11.1a"; transcript_id "ERV316A3_2p11.1a"; locus "ERV316A3_2p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0271"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2963"; ### ERV316A3_2p11.1b ### chr2 rmsk gene 91873093 91874655 . + . gene_id "ERV316A3_2p11.1b"; transcript_id "ERV316A3_2p11.1b"; locus "ERV316A3_2p11.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0272"; model_cov "1302"; model_pct "24.9"; chr2 rmsk exon 91873093 91874114 3124 + . gene_id "ERV316A3_2p11.1b"; transcript_id "ERV316A3_2p11.1b"; locus "ERV316A3_2p11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0272"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "-632"; repStart "3551"; chr2 rmsk exon 91874247 91874512 508 + . gene_id "ERV316A3_2p11.1b"; transcript_id "ERV316A3_2p11.1b"; locus "ERV316A3_2p11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0272"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4967"; chr2 rmsk exon 91874516 91874655 371 + . gene_id "ERV316A3_2p11.1b"; transcript_id "ERV316A3_2p11.1b"; locus "ERV316A3_2p11.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0272"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-294"; repStart "2"; ### HERVL_2p11.1b ### chr2 rmsk gene 92029468 92033543 . - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0161"; model_cov "3246"; model_pct "57.4"; chr2 rmsk exon 92029468 92029851 2924 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "1"; repStart "-61"; chr2 rmsk exon 92029852 92032294 13719 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3165"; repStart "0"; chr2 rmsk exon 92032293 92032788 3332 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "1812"; repFamily "ERVL"; repLeft "1317"; repStart "-3842"; chr2 rmsk exon 92032778 92033040 1686 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr2 rmsk exon 92033041 92033089 2641 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chr2 rmsk exon 92033159 92033543 2641 - . gene_id "HERVL_2p11.1b"; transcript_id "HERVL_2p11.1b"; locus "HERVL_2p11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0161"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "2"; repStart "-59"; ### HERVL_2q11.1 ### chr2 rmsk gene 94260048 94264073 . - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0162"; model_cov "3251"; model_pct "57.5"; chr2 rmsk exon 94260048 94260431 2670 - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0162"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr2 rmsk exon 94260432 94262876 13741 - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0162"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr2 rmsk exon 94262870 94263367 3395 - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0162"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr2 rmsk exon 94263357 94263619 1720 - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0162"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr2 rmsk exon 94263620 94264073 2704 - . gene_id "HERVL_2q11.1"; transcript_id "HERVL_2q11.1"; locus "HERVL_2q11.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0162"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_2q11.1a ### chr2 rmsk gene 95122751 95123846 . - . gene_id "ERVLB4_2q11.1a"; transcript_id "ERVLB4_2q11.1a"; locus "ERVLB4_2q11.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0188"; model_cov "1351"; model_pct "23.6"; chr2 rmsk exon 95122751 95123846 3990 - . gene_id "ERVLB4_2q11.1a"; transcript_id "ERVLB4_2q11.1a"; locus "ERVLB4_2q11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0188"; repClass "LTR"; repEnd "4595"; repFamily "ERVL"; repLeft "3244"; repStart "-1119"; ### ERVLB4_2q11.1b ### chr2 rmsk gene 95126905 95129136 . - . gene_id "ERVLB4_2q11.1b"; transcript_id "ERVLB4_2q11.1b"; locus "ERVLB4_2q11.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0189"; model_cov "992"; model_pct "17.4"; chr2 rmsk exon 95126905 95127556 3114 - . gene_id "ERVLB4_2q11.1b"; transcript_id "ERVLB4_2q11.1b"; locus "ERVLB4_2q11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0189"; repClass "LTR"; repEnd "2107"; repFamily "ERVL"; repLeft "1436"; repStart "-3607"; chr2 rmsk exon 95128818 95129136 1064 - . gene_id "ERVLB4_2q11.1b"; transcript_id "ERVLB4_2q11.1b"; locus "ERVLB4_2q11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0189"; repClass "LTR"; repEnd "1392"; repFamily "ERVL"; repLeft "1071"; repStart "-4322"; ### ERVLE_2q11.1a ### chr2 rmsk gene 95314435 95316267 . - . gene_id "ERVLE_2q11.1a"; transcript_id "ERVLE_2q11.1a"; locus "ERVLE_2q11.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0486"; model_cov "1368"; model_pct "24.1"; chr2 rmsk exon 95314435 95314623 520 - . gene_id "ERVLE_2q11.1a"; transcript_id "ERVLE_2q11.1a"; locus "ERVLE_2q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0486"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "4901"; repStart "-515"; chr2 rmsk exon 95314609 95314811 494 - . gene_id "ERVLE_2q11.1a"; transcript_id "ERVLE_2q11.1a"; locus "ERVLE_2q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0486"; repClass "LTR"; repEnd "4963"; repFamily "ERVL"; repLeft "4748"; repStart "-704"; chr2 rmsk exon 95315351 95315626 398 - . gene_id "ERVLE_2q11.1a"; transcript_id "ERVLE_2q11.1a"; locus "ERVLE_2q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0486"; repClass "LTR"; repEnd "4029"; repFamily "ERVL"; repLeft "3720"; repStart "-1638"; chr2 rmsk exon 95315694 95316267 443 - . gene_id "ERVLE_2q11.1a"; transcript_id "ERVLE_2q11.1a"; locus "ERVLE_2q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0486"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3019"; repStart "-2055"; ### ERVLE_2q11.1b ### chr2 rmsk gene 95393325 95394536 . + . gene_id "ERVLE_2q11.1b"; transcript_id "ERVLE_2q11.1b"; locus "ERVLE_2q11.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0487"; model_cov "1269"; model_pct "22.4"; chr2 rmsk exon 95393325 95393977 2072 + . gene_id "ERVLE_2q11.1b"; transcript_id "ERVLE_2q11.1b"; locus "ERVLE_2q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0487"; repClass "LTR"; repEnd "3758"; repFamily "ERVL"; repLeft "-1909"; repStart "3074"; chr2 rmsk exon 95393977 95394239 1162 + . gene_id "ERVLE_2q11.1b"; transcript_id "ERVLE_2q11.1b"; locus "ERVLE_2q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0487"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "-1334"; repStart "4063"; chr2 rmsk exon 95394260 95394536 743 + . gene_id "ERVLE_2q11.1b"; transcript_id "ERVLE_2q11.1b"; locus "ERVLE_2q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0487"; repClass "LTR"; repEnd "4980"; repFamily "ERVL"; repLeft "-687"; repStart "4665"; ### HUERSP1_2q11.2 ### chr2 rmsk gene 96209232 96212733 . + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0023"; model_cov "1687"; model_pct "26.9"; chr2 rmsk exon 96209232 96209895 4272 + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0023"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr2 rmsk exon 96209896 96210670 4553 + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0023"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "-5438"; repStart "1"; chr2 rmsk exon 96211062 96211338 5717 + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0023"; repClass "LTR"; repEnd "5681"; repFamily "ERV1"; repLeft "-582"; repStart "5399"; chr2 rmsk exon 96211635 96212218 5717 + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0023"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5682"; chr2 rmsk exon 96212219 96212733 4302 + . gene_id "HUERSP1_2q11.2"; transcript_id "HUERSP1_2q11.2"; locus "HUERSP1_2q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0023"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "-161"; repStart "1"; ### HERVW_2q11.2 ### chr2 rmsk gene 96217144 96223328 . - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0039"; model_cov "4862"; model_pct "56.4"; chr2 rmsk exon 96217144 96217468 2307 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr2 rmsk exon 96217469 96217759 2276 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 96217737 96217775 295 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 96217772 96217939 1301 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6985"; repStart "-1479"; chr2 rmsk exon 96217931 96218996 13514 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "4830"; repStart "-2724"; chr2 rmsk exon 96219310 96219881 13514 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "4829"; repFamily "ERV1"; repLeft "4259"; repStart "-3797"; chr2 rmsk exon 96219882 96221025 9709 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "3727"; repFamily "ERV1"; repLeft "2577"; repStart "-4899"; chr2 rmsk exon 96221022 96221943 6614 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "763"; repStart "-6992"; chr2 rmsk exon 96222098 96222818 5872 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "1"; repStart "-7917"; chr2 rmsk exon 96222819 96223328 3565 - . gene_id "HERVW_2q11.2"; transcript_id "HERVW_2q11.2"; locus "HERVW_2q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0039"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "253"; repStart "0"; ### ERVLE_2q11.2a ### chr2 rmsk gene 96229340 96233225 . - . gene_id "ERVLE_2q11.2a"; transcript_id "ERVLE_2q11.2a"; locus "ERVLE_2q11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0488"; model_cov "1415"; model_pct "25.0"; chr2 rmsk exon 96229340 96229517 1881 - . gene_id "ERVLE_2q11.2a"; transcript_id "ERVLE_2q11.2a"; locus "ERVLE_2q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0488"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "3577"; repStart "-1897"; chr2 rmsk exon 96229833 96230234 1881 - . gene_id "ERVLE_2q11.2a"; transcript_id "ERVLE_2q11.2a"; locus "ERVLE_2q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0488"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "3198"; repStart "-2091"; chr2 rmsk exon 96232464 96233225 2730 - . gene_id "ERVLE_2q11.2a"; transcript_id "ERVLE_2q11.2a"; locus "ERVLE_2q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0488"; repClass "LTR"; repEnd "3018"; repFamily "ERVL"; repLeft "2174"; repStart "-2649"; ### ERVLE_2q11.2b ### chr2 rmsk gene 96235418 96238331 . + . gene_id "ERVLE_2q11.2b"; transcript_id "ERVLE_2q11.2b"; locus "ERVLE_2q11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0489"; model_cov "2653"; model_pct "46.8"; chr2 rmsk exon 96235418 96235444 4963 + . gene_id "ERVLE_2q11.2b"; transcript_id "ERVLE_2q11.2b"; locus "ERVLE_2q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0489"; repClass "LTR"; repEnd "2206"; repFamily "ERVL"; repLeft "-3461"; repStart "2180"; chr2 rmsk exon 96235742 96238331 4963 + . gene_id "ERVLE_2q11.2b"; transcript_id "ERVLE_2q11.2b"; locus "ERVLE_2q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0489"; repClass "LTR"; repEnd "4834"; repFamily "ERVL"; repLeft "-833"; repStart "2207"; ### ERVLE_2q11.2c ### chr2 rmsk gene 96574676 96576997 . + . gene_id "ERVLE_2q11.2c"; transcript_id "ERVLE_2q11.2c"; locus "ERVLE_2q11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0490"; model_cov "2428"; model_pct "42.8"; chr2 rmsk exon 96574676 96575177 1345 + . gene_id "ERVLE_2q11.2c"; transcript_id "ERVLE_2q11.2c"; locus "ERVLE_2q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0490"; repClass "LTR"; repEnd "2538"; repFamily "ERVL"; repLeft "-3129"; repStart "1968"; chr2 rmsk exon 96575253 96576433 2599 + . gene_id "ERVLE_2q11.2c"; transcript_id "ERVLE_2q11.2c"; locus "ERVLE_2q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0490"; repClass "LTR"; repEnd "3941"; repFamily "ERVL"; repLeft "-1726"; repStart "2732"; chr2 rmsk exon 96576407 96576665 695 + . gene_id "ERVLE_2q11.2c"; transcript_id "ERVLE_2q11.2c"; locus "ERVLE_2q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0490"; repClass "LTR"; repEnd "4747"; repFamily "ERVL"; repLeft "-920"; repStart "4460"; chr2 rmsk exon 96576651 96576997 1429 + . gene_id "ERVLE_2q11.2c"; transcript_id "ERVLE_2q11.2c"; locus "ERVLE_2q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0490"; repClass "LTR"; repEnd "5031"; repFamily "ERVL"; repLeft "-636"; repStart "4669"; ### MER41_2q11.2 ### chr2 rmsk gene 98047751 98053992 . + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0052"; model_cov "4814"; model_pct "81.0"; chr2 rmsk exon 98047751 98047886 1630 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "-298"; repFamily "ERV1"; repLeft "-6244"; repStart "-424"; chr2 rmsk exon 98048319 98049239 3584 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "1593"; repFamily "ERV1"; repLeft "-4353"; repStart "517"; chr2 rmsk exon 98049291 98049396 445 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "1645"; chr2 rmsk exon 98049384 98049538 779 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1866"; chr2 rmsk exon 98049507 98049560 251 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "2215"; repFamily "ERV1"; repLeft "-3731"; repStart "2159"; chr2 rmsk exon 98049562 98051231 13186 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "4378"; repFamily "ERV1"; repLeft "-1568"; repStart "2667"; chr2 rmsk exon 98051529 98052308 13186 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "5139"; repFamily "ERV1"; repLeft "-807"; repStart "4379"; chr2 rmsk exon 98052584 98053430 13186 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0052"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5140"; chr2 rmsk exon 98053431 98053992 4462 + . gene_id "MER41_2q11.2"; transcript_id "MER41_2q11.2"; locus "MER41_2q11.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0052"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_2q11.2 ### chr2 rmsk gene 98429595 98437221 . + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0051"; model_cov "4960"; model_pct "95.1"; chr2 rmsk exon 98429595 98429964 1794 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0051"; repClass "LTR"; repEnd "314"; repFamily "ERV1"; repLeft "-113"; repStart "-187"; chr2 rmsk exon 98429965 98430078 532 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "133"; repFamily "ERV1"; repLeft "-5084"; repStart "22"; chr2 rmsk exon 98430143 98431092 25542 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "1512"; repFamily "ERV1"; repLeft "-3705"; repStart "364"; chr2 rmsk exon 98431606 98433313 25542 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "3228"; repFamily "ERV1"; repLeft "-1989"; repStart "1513"; chr2 rmsk exon 98433686 98435325 25542 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "4948"; repFamily "ERV1"; repLeft "-269"; repStart "3229"; chr2 rmsk exon 98436287 98436318 25542 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "4970"; repFamily "ERV1"; repLeft "-247"; repStart "4949"; chr2 rmsk exon 98436632 98436885 25542 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0051"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4971"; chr2 rmsk exon 98436886 98437221 1625 + . gene_id "MER61_2q11.2"; transcript_id "MER61_2q11.2"; locus "MER61_2q11.2"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0051"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_2q11.2 ### chr2 rmsk gene 98752222 98756736 . + . gene_id "PRIMA41_2q11.2"; transcript_id "PRIMA41_2q11.2"; locus "PRIMA41_2q11.2"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0019"; model_cov "4234"; model_pct "54.6"; chr2 rmsk exon 98752222 98752758 20104 + . gene_id "PRIMA41_2q11.2"; transcript_id "PRIMA41_2q11.2"; locus "PRIMA41_2q11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0019"; repClass "LTR"; repEnd "821"; repFamily "ERV1"; repLeft "-6935"; repStart "303"; chr2 rmsk exon 98753119 98756736 20104 + . gene_id "PRIMA41_2q11.2"; transcript_id "PRIMA41_2q11.2"; locus "PRIMA41_2q11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0019"; repClass "LTR"; repEnd "4538"; repFamily "ERV1"; repLeft "-3218"; repStart "822"; ### MER4_2q11.2a ### chr2 rmsk gene 99266312 99268296 . + . gene_id "MER4_2q11.2a"; transcript_id "MER4_2q11.2a"; locus "MER4_2q11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0090"; model_cov "1536"; model_pct "23.3"; chr2 rmsk exon 99266312 99267825 9536 + . gene_id "MER4_2q11.2a"; transcript_id "MER4_2q11.2a"; locus "MER4_2q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0090"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5062"; chr2 rmsk exon 99267827 99268296 3900 + . gene_id "MER4_2q11.2a"; transcript_id "MER4_2q11.2a"; locus "MER4_2q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0090"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_2q11.2 ### chr2 rmsk gene 99270681 99278573 . - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0027"; model_cov "6221"; model_pct "100.0"; chr2 rmsk exon 99270681 99271160 3706 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr2 rmsk exon 99271162 99271992 6644 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5193"; repStart "0"; chr2 rmsk exon 99272020 99272219 600 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "4273"; repFamily "ERVK"; repLeft "4074"; repStart "-1748"; chr2 rmsk exon 99272195 99276435 41674 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "987"; repStart "-825"; chr2 rmsk exon 99277101 99278091 41674 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "986"; repFamily "ERVK"; repLeft "1"; repStart "-5035"; chr2 rmsk exon 99278092 99278573 3571 - . gene_id "HML3_2q11.2"; transcript_id "HML3_2q11.2"; locus "HML3_2q11.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0027"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_2q11.2 ### chr2 rmsk gene 99496719 99499719 . + . gene_id "HERVIP10F_2q11.2"; transcript_id "HERVIP10F_2q11.2"; locus "HERVIP10F_2q11.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0015"; model_cov "2412"; model_pct "31.2"; chr2 rmsk exon 99496719 99497180 3517 + . gene_id "HERVIP10F_2q11.2"; transcript_id "HERVIP10F_2q11.2"; locus "HERVIP10F_2q11.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0015"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 99497182 99499719 16893 + . gene_id "HERVIP10F_2q11.2"; transcript_id "HERVIP10F_2q11.2"; locus "HERVIP10F_2q11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0015"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "-5323"; repStart "2"; ### HARLEQUIN_2q11.2a ### chr2 rmsk gene 99500002 99502168 . + . gene_id "HARLEQUIN_2q11.2a"; transcript_id "HARLEQUIN_2q11.2a"; locus "HARLEQUIN_2q11.2a"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0030"; model_cov "2186"; model_pct "31.7"; chr2 rmsk exon 99500002 99502168 19842 + . gene_id "HARLEQUIN_2q11.2a"; transcript_id "HARLEQUIN_2q11.2a"; locus "HARLEQUIN_2q11.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0030"; repClass "LTR"; repEnd "5063"; repFamily "ERV1"; repLeft "-1833"; repStart "2877"; ### HARLEQUIN_2q11.2b ### chr2 rmsk gene 99502475 99504032 . + . gene_id "HARLEQUIN_2q11.2b"; transcript_id "HARLEQUIN_2q11.2b"; locus "HARLEQUIN_2q11.2b"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0031"; model_cov "1005"; model_pct "14.6"; chr2 rmsk exon 99502475 99504032 19842 + . gene_id "HARLEQUIN_2q11.2b"; transcript_id "HARLEQUIN_2q11.2b"; locus "HARLEQUIN_2q11.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0031"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "-2739"; repStart "3152"; ### ERVLB4_2q11.2 ### chr2 rmsk gene 100175931 100179071 . + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0192"; model_cov "1453"; model_pct "25.4"; chr2 rmsk exon 100175931 100176185 289 + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0192"; repClass "LTR"; repEnd "665"; repFamily "ERVL"; repLeft "-5049"; repStart "413"; chr2 rmsk exon 100176279 100176528 256 + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0192"; repClass "LTR"; repEnd "1074"; repFamily "ERVL"; repLeft "-4640"; repStart "822"; chr2 rmsk exon 100177366 100177622 703 + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0192"; repClass "LTR"; repEnd "1758"; repFamily "ERVL"; repLeft "-3956"; repStart "1487"; chr2 rmsk exon 100177911 100178128 703 + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0192"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "-3735"; repStart "1759"; chr2 rmsk exon 100178627 100179071 1140 + . gene_id "ERVLB4_2q11.2"; transcript_id "ERVLB4_2q11.2"; locus "ERVLB4_2q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0192"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3263"; repStart "1993"; ### ERV316A3_2q11.2 ### chr2 rmsk gene 100265606 100271342 . - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0274"; model_cov "3605"; model_pct "69.0"; chr2 rmsk exon 100265606 100265931 544 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "4343"; repStart "-562"; chr2 rmsk exon 100266119 100267016 2231 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "2881"; repStart "-1396"; chr2 rmsk exon 100267025 100267079 3718 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "3056"; repFamily "ERVL"; repLeft "3008"; repStart "-2170"; chr2 rmsk exon 100267504 100269146 3718 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "3007"; repFamily "ERVL"; repLeft "1304"; repStart "-2219"; chr2 rmsk exon 100269188 100269495 979 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "1025"; repFamily "ERVL"; repLeft "709"; repStart "-4201"; chr2 rmsk exon 100269626 100269772 822 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "387"; repStart "-4677"; chr2 rmsk exon 100270807 100270910 822 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "280"; repStart "-4840"; chr2 rmsk exon 100270937 100271342 994 - . gene_id "ERV316A3_2q11.2"; transcript_id "ERV316A3_2q11.2"; locus "ERV316A3_2q11.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0274"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVL74_2q11.2 ### chr2 rmsk gene 100276117 100280003 . + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0009"; model_cov "3539"; model_pct "62.3"; chr2 rmsk exon 100276117 100277904 5553 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2597"; repStart "1125"; chr2 rmsk exon 100277974 100278476 5553 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3089"; chr2 rmsk exon 100278489 100278641 896 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3920"; chr2 rmsk exon 100278630 100279252 1924 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "5241"; repFamily "ERVL"; repLeft "-444"; repStart "4586"; chr2 rmsk exon 100279283 100279501 831 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "-90"; repStart "5381"; chr2 rmsk exon 100279533 100280003 1391 + . gene_id "HERVL74_2q11.2"; transcript_id "HERVL74_2q11.2"; locus "HERVL74_2q11.2"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0009"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "-67"; repStart "41"; ### HERVK11_2q11.2 ### chr2 rmsk gene 100361988 100365971 . - . gene_id "HERVK11_2q11.2"; transcript_id "HERVK11_2q11.2"; locus "HERVK11_2q11.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0015"; model_cov "3202"; model_pct "40.3"; chr2 rmsk exon 100361988 100362947 5618 - . gene_id "HERVK11_2q11.2"; transcript_id "HERVK11_2q11.2"; locus "HERVK11_2q11.2"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0015"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 100362948 100365931 16445 - . gene_id "HERVK11_2q11.2"; transcript_id "HERVK11_2q11.2"; locus "HERVK11_2q11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0015"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "4751"; repStart "0"; chr2 rmsk exon 100365932 100365971 316 - . gene_id "HERVK11_2q11.2"; transcript_id "HERVK11_2q11.2"; locus "HERVK11_2q11.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0015"; repClass "LTR"; repEnd "40"; repFamily "ERVK"; repLeft "1"; repStart "-1226"; ### MER4_2q11.2b ### chr2 rmsk gene 100452698 100460596 . + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0091"; model_cov "6436"; model_pct "97.5"; chr2 rmsk exon 100452698 100453154 3107 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0091"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 100453158 100454798 11422 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0091"; repClass "LTR"; repEnd "1710"; repFamily "ERV1"; repLeft "-4888"; repStart "1"; chr2 rmsk exon 100455089 100455858 11422 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0091"; repClass "LTR"; repEnd "2628"; repFamily "ERV1"; repLeft "-3970"; repStart "1711"; chr2 rmsk exon 100456081 100456961 11422 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0091"; repClass "LTR"; repEnd "3680"; repFamily "ERV1"; repLeft "-2918"; repStart "2629"; chr2 rmsk exon 100456961 100457618 17669 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0091"; repClass "LTR"; repEnd "4516"; repFamily "ERV1"; repLeft "-2082"; repStart "3836"; chr2 rmsk exon 100458096 100460120 17669 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0091"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4517"; chr2 rmsk exon 100460129 100460596 3460 + . gene_id "MER4_2q11.2b"; transcript_id "MER4_2q11.2b"; locus "MER4_2q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0091"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_2q11.2 ### chr2 rmsk gene 100712063 100717660 . + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0163"; model_cov "4751"; model_pct "84.0"; chr2 rmsk exon 100712063 100712433 2839 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "-62"; repStart "1"; chr2 rmsk exon 100712515 100712553 2839 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-3"; repStart "383"; chr2 rmsk exon 100712556 100713390 6788 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "859"; repFamily "ERVL"; repLeft "-4795"; repStart "1"; chr2 rmsk exon 100713390 100714664 10122 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "3188"; repFamily "ERVL"; repLeft "-2466"; repStart "1898"; chr2 rmsk exon 100714662 100714801 1196 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "2536"; repFamily "ERVL"; repLeft "-3118"; repStart "2394"; chr2 rmsk exon 100714803 100717231 20024 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3193"; chr2 rmsk exon 100717232 100717660 2923 + . gene_id "HERVL_2q11.2"; transcript_id "HERVL_2q11.2"; locus "HERVL_2q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0163"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVK11D_2q11.2 ### chr2 rmsk gene 101237832 101245098 . + . gene_id "HERVK11D_2q11.2"; transcript_id "HERVK11D_2q11.2"; locus "HERVK11D_2q11.2"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0002"; model_cov "5553"; model_pct "71.6"; chr2 rmsk exon 101237832 101238705 7089 + . gene_id "HERVK11D_2q11.2"; transcript_id "HERVK11D_2q11.2"; locus "HERVK11D_2q11.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0002"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 101238714 101239563 7021 + . gene_id "HERVK11D_2q11.2"; transcript_id "HERVK11D_2q11.2"; locus "HERVK11D_2q11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0002"; repClass "LTR"; repEnd "862"; repFamily "ERVK"; repLeft "-6890"; repStart "9"; chr2 rmsk exon 101239548 101244225 39961 + . gene_id "HERVK11D_2q11.2"; transcript_id "HERVK11D_2q11.2"; locus "HERVK11D_2q11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0002"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "3052"; chr2 rmsk exon 101244226 101245098 7304 + . gene_id "HERVK11D_2q11.2"; transcript_id "HERVK11D_2q11.2"; locus "HERVK11D_2q11.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0002"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR25_2q12.1 ### chr2 rmsk gene 102408621 102413726 . + . gene_id "LTR25_2q12.1"; transcript_id "LTR25_2q12.1"; locus "LTR25_2q12.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0016"; model_cov "2518"; model_pct "35.0"; chr2 rmsk exon 102408621 102410356 4498 + . gene_id "LTR25_2q12.1"; transcript_id "LTR25_2q12.1"; locus "LTR25_2q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0016"; repClass "LTR"; repEnd "4188"; repFamily "ERV1"; repLeft "-3000"; repStart "3752"; chr2 rmsk exon 102410651 102411108 4498 + . gene_id "LTR25_2q12.1"; transcript_id "LTR25_2q12.1"; locus "LTR25_2q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0016"; repClass "LTR"; repEnd "4622"; repFamily "ERV1"; repLeft "-2566"; repStart "4189"; chr2 rmsk exon 102412077 102413726 8960 + . gene_id "LTR25_2q12.1"; transcript_id "LTR25_2q12.1"; locus "LTR25_2q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0016"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "-2"; repStart "5537"; ### ERVLE_2q12.1a ### chr2 rmsk gene 102548638 102552825 . - . gene_id "ERVLE_2q12.1a"; transcript_id "ERVLE_2q12.1a"; locus "ERVLE_2q12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0492"; model_cov "1330"; model_pct "23.5"; chr2 rmsk exon 102548638 102548962 732 - . gene_id "ERVLE_2q12.1a"; transcript_id "ERVLE_2q12.1a"; locus "ERVLE_2q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0492"; repClass "LTR"; repEnd "4732"; repFamily "ERVL"; repLeft "4399"; repStart "-935"; chr2 rmsk exon 102550419 102550991 367 - . gene_id "ERVLE_2q12.1a"; transcript_id "ERVLE_2q12.1a"; locus "ERVLE_2q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0492"; repClass "LTR"; repEnd "4014"; repFamily "ERVL"; repLeft "3408"; repStart "-1653"; chr2 rmsk exon 102552423 102552534 371 - . gene_id "ERVLE_2q12.1a"; transcript_id "ERVLE_2q12.1a"; locus "ERVLE_2q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0492"; repClass "LTR"; repEnd "3367"; repFamily "ERVL"; repLeft "3252"; repStart "-2300"; chr2 rmsk exon 102552560 102552825 351 - . gene_id "ERVLE_2q12.1a"; transcript_id "ERVLE_2q12.1a"; locus "ERVLE_2q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0492"; repClass "LTR"; repEnd "3210"; repFamily "ERVL"; repLeft "2934"; repStart "-2457"; ### ERV316A3_2q12.1a ### chr2 rmsk gene 102556205 102559853 . - . gene_id "ERV316A3_2q12.1a"; transcript_id "ERV316A3_2q12.1a"; locus "ERV316A3_2q12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0276"; model_cov "2182"; model_pct "41.8"; chr2 rmsk exon 102556205 102556656 3234 - . gene_id "ERV316A3_2q12.1a"; transcript_id "ERV316A3_2q12.1a"; locus "ERV316A3_2q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0276"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "2893"; repStart "-1903"; chr2 rmsk exon 102556926 102558203 3234 - . gene_id "ERV316A3_2q12.1a"; transcript_id "ERV316A3_2q12.1a"; locus "ERV316A3_2q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0276"; repClass "LTR"; repEnd "2892"; repFamily "ERVL"; repLeft "1595"; repStart "-2334"; chr2 rmsk exon 102558991 102559431 1047 - . gene_id "ERV316A3_2q12.1a"; transcript_id "ERV316A3_2q12.1a"; locus "ERV316A3_2q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0276"; repClass "LTR"; repEnd "687"; repFamily "ERVL"; repLeft "232"; repStart "-4539"; chr2 rmsk exon 102559445 102559853 1056 - . gene_id "ERV316A3_2q12.1a"; transcript_id "ERV316A3_2q12.1a"; locus "ERV316A3_2q12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0276"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "2"; repStart "-2"; ### ERVLE_2q12.1b ### chr2 rmsk gene 102559862 102561918 . - . gene_id "ERVLE_2q12.1b"; transcript_id "ERVLE_2q12.1b"; locus "ERVLE_2q12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0493"; model_cov "1959"; model_pct "34.6"; chr2 rmsk exon 102559862 102560080 824 - . gene_id "ERVLE_2q12.1b"; transcript_id "ERVLE_2q12.1b"; locus "ERVLE_2q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0493"; repClass "LTR"; repEnd "2326"; repFamily "ERVL"; repLeft "2106"; repStart "-3341"; chr2 rmsk exon 102560075 102560852 1195 - . gene_id "ERVLE_2q12.1b"; transcript_id "ERVLE_2q12.1b"; locus "ERVLE_2q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0493"; repClass "LTR"; repEnd "2107"; repFamily "ERVL"; repLeft "1240"; repStart "-3560"; chr2 rmsk exon 102560943 102561256 410 - . gene_id "ERVLE_2q12.1b"; transcript_id "ERVLE_2q12.1b"; locus "ERVLE_2q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0493"; repClass "LTR"; repEnd "1189"; repFamily "ERVL"; repLeft "865"; repStart "-4478"; chr2 rmsk exon 102561384 102561918 571 - . gene_id "ERVLE_2q12.1b"; transcript_id "ERVLE_2q12.1b"; locus "ERVLE_2q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0493"; repClass "LTR"; repEnd "658"; repFamily "ERVL"; repLeft "110"; repStart "-5009"; ### ERVLE_2q12.1c ### chr2 rmsk gene 102737932 102739320 . + . gene_id "ERVLE_2q12.1c"; transcript_id "ERVLE_2q12.1c"; locus "ERVLE_2q12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0494"; model_cov "1101"; model_pct "19.4"; chr2 rmsk exon 102737932 102738312 2121 + . gene_id "ERVLE_2q12.1c"; transcript_id "ERVLE_2q12.1c"; locus "ERVLE_2q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0494"; repClass "LTR"; repEnd "855"; repFamily "ERVL"; repLeft "-4812"; repStart "485"; chr2 rmsk exon 102738595 102739320 2121 + . gene_id "ERVLE_2q12.1c"; transcript_id "ERVLE_2q12.1c"; locus "ERVLE_2q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0494"; repClass "LTR"; repEnd "1587"; repFamily "ERVL"; repLeft "-4080"; repStart "856"; ### HERVL_2q12.1a ### chr2 rmsk gene 102908553 102915165 . - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0165"; model_cov "5547"; model_pct "98.1"; chr2 rmsk exon 102908553 102908632 274 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "366"; repStart "0"; chr2 rmsk exon 102908724 102909099 2765 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "2"; repStart "-60"; chr2 rmsk exon 102909101 102909641 4105 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5113"; repStart "0"; chr2 rmsk exon 102909642 102914619 36445 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "1"; repStart "-647"; chr2 rmsk exon 102914620 102914685 301 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr2 rmsk exon 102914771 102915165 2757 - . gene_id "HERVL_2q12.1a"; transcript_id "HERVL_2q12.1a"; locus "HERVL_2q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0165"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "3"; repStart "-37"; ### ERVLE_2q12.1d ### chr2 rmsk gene 103067202 103068681 . + . gene_id "ERVLE_2q12.1d"; transcript_id "ERVLE_2q12.1d"; locus "ERVLE_2q12.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0495"; model_cov "1043"; model_pct "18.4"; chr2 rmsk exon 103067202 103067265 257 + . gene_id "ERVLE_2q12.1d"; transcript_id "ERVLE_2q12.1d"; locus "ERVLE_2q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0495"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "-2408"; repStart "3198"; chr2 rmsk exon 103067255 103068089 1223 + . gene_id "ERVLE_2q12.1d"; transcript_id "ERVLE_2q12.1d"; locus "ERVLE_2q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0495"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "-1626"; repStart "3202"; chr2 rmsk exon 103068529 103068681 252 + . gene_id "ERVLE_2q12.1d"; transcript_id "ERVLE_2q12.1d"; locus "ERVLE_2q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0495"; repClass "LTR"; repEnd "5596"; repFamily "ERVL"; repLeft "-71"; repStart "5453"; ### ERVLB4_2q12.1b ### chr2 rmsk gene 103379600 103384049 . + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; category "tandem*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0195"; model_cov "1390"; model_pct "24.3"; chr2 rmsk exon 103379600 103380026 595 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "2879"; repFamily "ERVL"; repLeft "-2835"; repStart "2430"; chr2 rmsk exon 103380275 103380801 1490 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "3780"; repFamily "ERVL"; repLeft "-1934"; repStart "3240"; chr2 rmsk exon 103381186 103381570 1490 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "4182"; repFamily "ERVL"; repLeft "-1532"; repStart "3781"; chr2 rmsk exon 103381953 103382257 2225 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "307"; repFamily "ERVL"; repLeft "-157"; repStart "1"; chr2 rmsk exon 103382567 103382746 2225 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "308"; chr2 rmsk exon 103382775 103384049 5543 + . gene_id "ERVLB4_2q12.1b"; transcript_id "ERVLB4_2q12.1b"; locus "ERVLB4_2q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0195"; repClass "LTR"; repEnd "1425"; repFamily "ERVL"; repLeft "-4289"; repStart "44"; ### MER41_2q12.1 ### chr2 rmsk gene 103469416 103470672 . - . gene_id "MER41_2q12.1"; transcript_id "MER41_2q12.1"; locus "MER41_2q12.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0053"; model_cov "639"; model_pct "10.7"; chr2 rmsk exon 103469416 103470043 4058 - . gene_id "MER41_2q12.1"; transcript_id "MER41_2q12.1"; locus "MER41_2q12.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0053"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 103470044 103470672 4355 - . gene_id "MER41_2q12.1"; transcript_id "MER41_2q12.1"; locus "MER41_2q12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0053"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5305"; repStart "-2"; ### HUERSP1_2q12.1 ### chr2 rmsk gene 103476371 103480381 . - . gene_id "HUERSP1_2q12.1"; transcript_id "HUERSP1_2q12.1"; locus "HUERSP1_2q12.1"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0024"; model_cov "3755"; model_pct "60.0"; chr2 rmsk exon 103476371 103476683 1803 - . gene_id "HUERSP1_2q12.1"; transcript_id "HUERSP1_2q12.1"; locus "HUERSP1_2q12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0024"; repClass "LTR"; repEnd "5565"; repFamily "ERV1"; repLeft "5272"; repStart "-698"; chr2 rmsk exon 103476669 103478889 6730 - . gene_id "HUERSP1_2q12.1"; transcript_id "HUERSP1_2q12.1"; locus "HUERSP1_2q12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0024"; repClass "LTR"; repEnd "4300"; repFamily "ERV1"; repLeft "2097"; repStart "-1963"; chr2 rmsk exon 103479204 103479697 6730 - . gene_id "HUERSP1_2q12.1"; transcript_id "HUERSP1_2q12.1"; locus "HUERSP1_2q12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0024"; repClass "LTR"; repEnd "2096"; repFamily "ERV1"; repLeft "1526"; repStart "-4167"; chr2 rmsk exon 103479700 103480381 4701 - . gene_id "HUERSP1_2q12.1"; transcript_id "HUERSP1_2q12.1"; locus "HUERSP1_2q12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0024"; repClass "LTR"; repEnd "1007"; repFamily "ERV1"; repLeft "318"; repStart "-5256"; ### ERVLB4_2q12.1a ### chr2 rmsk gene 104181252 104184956 . + . gene_id "ERVLB4_2q12.1a"; transcript_id "ERVLB4_2q12.1a"; locus "ERVLB4_2q12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0197"; model_cov "2566"; model_pct "44.9"; chr2 rmsk exon 104181252 104183318 13720 + . gene_id "ERVLB4_2q12.1a"; transcript_id "ERVLB4_2q12.1a"; locus "ERVLB4_2q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0197"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-509"; repStart "3124"; chr2 rmsk exon 104183912 104184397 13720 + . gene_id "ERVLB4_2q12.1a"; transcript_id "ERVLB4_2q12.1a"; locus "ERVLB4_2q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0197"; repClass "LTR"; repEnd "5691"; repFamily "ERVL"; repLeft "-23"; repStart "5206"; chr2 rmsk exon 104184420 104184956 2266 + . gene_id "ERVLB4_2q12.1a"; transcript_id "ERVLB4_2q12.1a"; locus "ERVLB4_2q12.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0197"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "-2"; repStart "3"; ### HUERSP3B_2q12.1 ### chr2 rmsk gene 104214451 104216134 . + . gene_id "HUERSP3B_2q12.1"; transcript_id "HUERSP3B_2q12.1"; locus "HUERSP3B_2q12.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0020"; model_cov "1940"; model_pct "26.2"; chr2 rmsk exon 104214451 104215570 7230 + . gene_id "HUERSP3B_2q12.1"; transcript_id "HUERSP3B_2q12.1"; locus "HUERSP3B_2q12.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0020"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "5471"; chr2 rmsk exon 104215571 104216134 3505 + . gene_id "HUERSP3B_2q12.1"; transcript_id "HUERSP3B_2q12.1"; locus "HUERSP3B_2q12.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0020"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-80"; repStart "1"; ### HERVL_2q12.1b ### chr2 rmsk gene 104587419 104593985 . - . gene_id "HERVL_2q12.1b"; transcript_id "HERVL_2q12.1b"; locus "HERVL_2q12.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0166"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 104587419 104587499 3132 - . gene_id "HERVL_2q12.1b"; transcript_id "HERVL_2q12.1b"; locus "HERVL_2q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0166"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "387"; repStart "-45"; chr2 rmsk exon 104587543 104587935 3132 - . gene_id "HERVL_2q12.1b"; transcript_id "HERVL_2q12.1b"; locus "HERVL_2q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0166"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr2 rmsk exon 104587936 104593528 42228 - . gene_id "HERVL_2q12.1b"; transcript_id "HERVL_2q12.1b"; locus "HERVL_2q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0166"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 104593529 104593985 3388 - . gene_id "HERVL_2q12.1b"; transcript_id "HERVL_2q12.1b"; locus "HERVL_2q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0166"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_2q12.1e ### chr2 rmsk gene 104722319 104726329 . + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0498"; model_cov "3410"; model_pct "60.2"; chr2 rmsk exon 104722319 104722463 330 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "544"; repFamily "ERVL"; repLeft "-5123"; repStart "387"; chr2 rmsk exon 104722554 104722699 341 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "819"; repFamily "ERVL"; repLeft "-4848"; repStart "606"; chr2 rmsk exon 104723011 104723793 1650 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "1935"; repFamily "ERVL"; repLeft "-3732"; repStart "1132"; chr2 rmsk exon 104724104 104724805 1650 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "2641"; repFamily "ERVL"; repLeft "-3026"; repStart "1936"; chr2 rmsk exon 104724827 104725456 1641 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "3372"; repFamily "ERVL"; repLeft "-2295"; repStart "2702"; chr2 rmsk exon 104725478 104726069 1302 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "-1534"; repStart "3522"; chr2 rmsk exon 104726087 104726329 707 + . gene_id "ERVLE_2q12.1e"; transcript_id "ERVLE_2q12.1e"; locus "ERVLE_2q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0498"; repClass "LTR"; repEnd "4458"; repFamily "ERVL"; repLeft "-1209"; repStart "4207"; ### ERV316A3_2q12.1b ### chr2 rmsk gene 105128819 105131658 . - . gene_id "ERV316A3_2q12.1b"; transcript_id "ERV316A3_2q12.1b"; locus "ERV316A3_2q12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0278"; model_cov "2274"; model_pct "43.5"; chr2 rmsk exon 105128819 105129247 1583 - . gene_id "ERV316A3_2q12.1b"; transcript_id "ERV316A3_2q12.1b"; locus "ERV316A3_2q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0278"; repClass "LTR"; repEnd "4258"; repFamily "ERVL"; repLeft "3825"; repStart "-968"; chr2 rmsk exon 105129457 105130953 5706 - . gene_id "ERV316A3_2q12.1b"; transcript_id "ERV316A3_2q12.1b"; locus "ERV316A3_2q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0278"; repClass "LTR"; repEnd "3828"; repFamily "ERVL"; repLeft "2346"; repStart "-1398"; chr2 rmsk exon 105131314 105131658 5706 - . gene_id "ERV316A3_2q12.1b"; transcript_id "ERV316A3_2q12.1b"; locus "ERV316A3_2q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0278"; repClass "LTR"; repEnd "2345"; repFamily "ERVL"; repLeft "1986"; repStart "-2881"; ### ERVLE_2q12.1f ### chr2 rmsk gene 105134089 105135321 . + . gene_id "ERVLE_2q12.1f"; transcript_id "ERVLE_2q12.1f"; locus "ERVLE_2q12.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0499"; model_cov "1365"; model_pct "24.1"; chr2 rmsk exon 105134089 105134201 274 + . gene_id "ERVLE_2q12.1f"; transcript_id "ERVLE_2q12.1f"; locus "ERVLE_2q12.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0499"; repClass "LTR"; repEnd "3872"; repFamily "ERVL"; repLeft "-1795"; repStart "3742"; chr2 rmsk exon 105134205 105135321 1869 + . gene_id "ERVLE_2q12.1f"; transcript_id "ERVLE_2q12.1f"; locus "ERVLE_2q12.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0499"; repClass "LTR"; repEnd "5053"; repFamily "ERVL"; repLeft "-614"; repStart "3818"; ### HERVH48_2q12.2 ### chr2 rmsk gene 105968435 105969656 . - . gene_id "HERVH48_2q12.2"; transcript_id "HERVH48_2q12.2"; locus "HERVH48_2q12.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0010"; model_cov "813"; model_pct "12.2"; chr2 rmsk exon 105968435 105968775 2549 - . gene_id "HERVH48_2q12.2"; transcript_id "HERVH48_2q12.2"; locus "HERVH48_2q12.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0010"; repClass "LTR"; repEnd "343"; repFamily "ERV1"; repLeft "1"; repStart "-64"; chr2 rmsk exon 105968779 105969656 5318 - . gene_id "HERVH48_2q12.2"; transcript_id "HERVH48_2q12.2"; locus "HERVH48_2q12.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0010"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "5834"; repStart "-7"; ### HARLEQUIN_2q12.2 ### chr2 rmsk gene 105979107 105986361 . - . gene_id "HARLEQUIN_2q12.2"; transcript_id "HARLEQUIN_2q12.2"; locus "HARLEQUIN_2q12.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0032"; model_cov "6355"; model_pct "92.2"; chr2 rmsk exon 105979107 105979567 3621 - . gene_id "HARLEQUIN_2q12.2"; transcript_id "HARLEQUIN_2q12.2"; locus "HARLEQUIN_2q12.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0032"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 105979568 105984541 39742 - . gene_id "HARLEQUIN_2q12.2"; transcript_id "HARLEQUIN_2q12.2"; locus "HARLEQUIN_2q12.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0032"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1898"; repStart "0"; chr2 rmsk exon 105984532 105985900 7628 - . gene_id "HARLEQUIN_2q12.2"; transcript_id "HARLEQUIN_2q12.2"; locus "HARLEQUIN_2q12.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0032"; repClass "LTR"; repEnd "3152"; repFamily "ERV1"; repLeft "1795"; repStart "-3744"; chr2 rmsk exon 105985901 105986361 3586 - . gene_id "HARLEQUIN_2q12.2"; transcript_id "HARLEQUIN_2q12.2"; locus "HARLEQUIN_2q12.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0032"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML1_2q12.2 ### chr2 rmsk gene 105989643 105992204 . + . gene_id "HML1_2q12.2"; transcript_id "HML1_2q12.2"; locus "HML1_2q12.2"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0010"; model_cov "1984"; model_pct "32.5"; chr2 rmsk exon 105989643 105990255 3849 + . gene_id "HML1_2q12.2"; transcript_id "HML1_2q12.2"; locus "HML1_2q12.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0010"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "17"; chr2 rmsk exon 105990256 105991451 9170 + . gene_id "HML1_2q12.2"; transcript_id "HML1_2q12.2"; locus "HML1_2q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0010"; repClass "LTR"; repEnd "1195"; repFamily "ERVK"; repLeft "-4901"; repStart "1"; chr2 rmsk exon 105991421 105992204 5951 + . gene_id "HML1_2q12.2"; transcript_id "HML1_2q12.2"; locus "HML1_2q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0010"; repClass "LTR"; repEnd "2438"; repFamily "ERVK"; repLeft "-3658"; repStart "1648"; ### HERVK14C_2q12.2 ### chr2 rmsk gene 105992199 105994175 . + . gene_id "HERVK14C_2q12.2"; transcript_id "HERVK14C_2q12.2"; locus "HERVK14C_2q12.2"; category "internal"; intModel "HERVK14C-int"; locid "HERVK14C-int_0005"; model_cov "3866"; model_pct "52.0"; chr2 rmsk exon 105992199 105994175 3612 + . gene_id "HERVK14C_2q12.2"; transcript_id "HERVK14C_2q12.2"; locus "HERVK14C_2q12.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0005"; repClass "LTR"; repEnd "7394"; repFamily "ERVK"; repLeft "-40"; repStart "3528"; ### HERVW_2q12.2 ### chr2 rmsk gene 106209214 106215676 . + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0040"; model_cov "5326"; model_pct "61.7"; chr2 rmsk exon 106209214 106209713 3615 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr2 rmsk exon 106209714 106211221 9582 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "1474"; repFamily "ERV1"; repLeft "-7152"; repStart "1"; chr2 rmsk exon 106211193 106214401 29979 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "5711"; repFamily "ERV1"; repLeft "-2915"; repStart "2490"; chr2 rmsk exon 106214708 106215025 29979 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5712"; chr2 rmsk exon 106215019 106215057 296 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr2 rmsk exon 106215049 106215331 2308 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "-3"; repStart "8336"; chr2 rmsk exon 106215334 106215676 2486 + . gene_id "HERVW_2q12.2"; transcript_id "HERVW_2q12.2"; locus "HERVW_2q12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0040"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_2q12.2 ### chr2 rmsk gene 106531260 106532155 . - . gene_id "ERVLE_2q12.2"; transcript_id "ERVLE_2q12.2"; locus "ERVLE_2q12.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0501"; model_cov "625"; model_pct "11.0"; chr2 rmsk exon 106531260 106531560 473 - . gene_id "ERVLE_2q12.2"; transcript_id "ERVLE_2q12.2"; locus "ERVLE_2q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0501"; repClass "LTR"; repEnd "2937"; repFamily "ERVL"; repLeft "2637"; repStart "-2730"; chr2 rmsk exon 106531833 106532155 491 - . gene_id "ERVLE_2q12.2"; transcript_id "ERVLE_2q12.2"; locus "ERVLE_2q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0501"; repClass "LTR"; repEnd "1227"; repFamily "ERVL"; repLeft "902"; repStart "-4440"; ### ERVLE_2q12.3a ### chr2 rmsk gene 106746409 106748757 . - . gene_id "ERVLE_2q12.3a"; transcript_id "ERVLE_2q12.3a"; locus "ERVLE_2q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0502"; model_cov "1302"; model_pct "23.0"; chr2 rmsk exon 106746409 106747248 951 - . gene_id "ERVLE_2q12.3a"; transcript_id "ERVLE_2q12.3a"; locus "ERVLE_2q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0502"; repClass "LTR"; repEnd "5025"; repFamily "ERVL"; repLeft "4138"; repStart "-642"; chr2 rmsk exon 106747408 106747708 547 - . gene_id "ERVLE_2q12.3a"; transcript_id "ERVLE_2q12.3a"; locus "ERVLE_2q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0502"; repClass "LTR"; repEnd "3930"; repFamily "ERVL"; repLeft "3618"; repStart "-1737"; chr2 rmsk exon 106748660 106748757 278 - . gene_id "ERVLE_2q12.3a"; transcript_id "ERVLE_2q12.3a"; locus "ERVLE_2q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0502"; repClass "LTR"; repEnd "2841"; repFamily "ERVL"; repLeft "2738"; repStart "-2826"; ### ERVLE_2q12.3b ### chr2 rmsk gene 106790918 106794060 . - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0503"; model_cov "1917"; model_pct "33.8"; chr2 rmsk exon 106790918 106791471 1160 - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0503"; repClass "LTR"; repEnd "4501"; repFamily "ERVL"; repLeft "3940"; repStart "-1166"; chr2 rmsk exon 106791560 106791775 975 - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0503"; repClass "LTR"; repEnd "3821"; repFamily "ERVL"; repLeft "3565"; repStart "-1846"; chr2 rmsk exon 106792006 106792202 975 - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0503"; repClass "LTR"; repEnd "3564"; repFamily "ERVL"; repLeft "3344"; repStart "-2103"; chr2 rmsk exon 106792741 106792885 426 - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0503"; repClass "LTR"; repEnd "3087"; repFamily "ERVL"; repLeft "2941"; repStart "-2580"; chr2 rmsk exon 106793332 106794060 1368 - . gene_id "ERVLE_2q12.3b"; transcript_id "ERVLE_2q12.3b"; locus "ERVLE_2q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0503"; repClass "LTR"; repEnd "799"; repFamily "ERVL"; repLeft "65"; repStart "-4868"; ### HERVL_2q12.3 ### chr2 rmsk gene 106913396 106918092 . + . gene_id "HERVL_2q12.3"; transcript_id "HERVL_2q12.3"; locus "HERVL_2q12.3"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0167"; model_cov "4281"; model_pct "75.7"; chr2 rmsk exon 106913396 106914842 18814 + . gene_id "HERVL_2q12.3"; transcript_id "HERVL_2q12.3"; locus "HERVL_2q12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0167"; repClass "LTR"; repEnd "2945"; repFamily "ERVL"; repLeft "-2709"; repStart "1443"; chr2 rmsk exon 106914890 106917135 18814 + . gene_id "HERVL_2q12.3"; transcript_id "HERVL_2q12.3"; locus "HERVL_2q12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0167"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "-382"; repStart "2946"; chr2 rmsk exon 106917359 106917483 1415 + . gene_id "HERVL_2q12.3"; transcript_id "HERVL_2q12.3"; locus "HERVL_2q12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0167"; repClass "LTR"; repEnd "5313"; repFamily "ERVL"; repLeft "-341"; repStart "5188"; chr2 rmsk exon 106917813 106918092 1415 + . gene_id "HERVL_2q12.3"; transcript_id "HERVL_2q12.3"; locus "HERVL_2q12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0167"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "-10"; repStart "5316"; ### ERV316A3_2q12.3a ### chr2 rmsk gene 106967926 106974578 . - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0279"; model_cov "3186"; model_pct "61.0"; chr2 rmsk exon 106967926 106968148 413 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "156"; repStart "-37"; chr2 rmsk exon 106968420 106969168 1215 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "3940"; repFamily "ERVL"; repLeft "3334"; repStart "-1286"; chr2 rmsk exon 106969657 106969705 3011 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "2909"; repFamily "ERVL"; repLeft "2862"; repStart "-2317"; chr2 rmsk exon 106970148 106970844 3011 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "2861"; repFamily "ERVL"; repLeft "2105"; repStart "-2365"; chr2 rmsk exon 106972055 106973804 3011 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "327"; repStart "-3122"; chr2 rmsk exon 106974171 106974578 1191 - . gene_id "ERV316A3_2q12.3a"; transcript_id "ERV316A3_2q12.3a"; locus "ERV316A3_2q12.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0279"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "6"; repStart "-6"; ### ERVLB4_2q12.3a ### chr2 rmsk gene 107424653 107427857 . - . gene_id "ERVLB4_2q12.3a"; transcript_id "ERVLB4_2q12.3a"; locus "ERVLB4_2q12.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0198"; model_cov "2076"; model_pct "36.3"; chr2 rmsk exon 107424653 107425073 2005 - . gene_id "ERVLB4_2q12.3a"; transcript_id "ERVLB4_2q12.3a"; locus "ERVLB4_2q12.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0198"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "1"; repStart "-73"; chr2 rmsk exon 107425074 107425941 10880 - . gene_id "ERVLB4_2q12.3a"; transcript_id "ERVLB4_2q12.3a"; locus "ERVLB4_2q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0198"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4827"; repStart "0"; chr2 rmsk exon 107426353 107426760 10880 - . gene_id "ERVLB4_2q12.3a"; transcript_id "ERVLB4_2q12.3a"; locus "ERVLB4_2q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0198"; repClass "LTR"; repEnd "4826"; repFamily "ERVL"; repLeft "4415"; repStart "-888"; chr2 rmsk exon 107427125 107427857 10880 - . gene_id "ERVLB4_2q12.3a"; transcript_id "ERVLB4_2q12.3a"; locus "ERVLB4_2q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0198"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "3636"; repStart "-1300"; ### ERV316A3_2q12.3b ### chr2 rmsk gene 107614581 107615131 . + . gene_id "ERV316A3_2q12.3b"; transcript_id "ERV316A3_2q12.3b"; locus "ERV316A3_2q12.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0280"; model_cov "577"; model_pct "11.0"; chr2 rmsk exon 107614581 107615131 868 + . gene_id "ERV316A3_2q12.3b"; transcript_id "ERV316A3_2q12.3b"; locus "ERV316A3_2q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0280"; repClass "LTR"; repEnd "1377"; repFamily "ERVL"; repLeft "-3849"; repStart "800"; ### PABLA_2q12.3 ### chr2 rmsk gene 107617047 107620549 . + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0018"; model_cov "3756"; model_pct "74.9"; chr2 rmsk exon 107617047 107617741 4258 + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0018"; repClass "LTR"; repEnd "-403"; repFamily "ERV1"; repLeft "-5418"; repStart "-1247"; chr2 rmsk exon 107617720 107617924 1503 + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0018"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "-4340"; repStart "461"; chr2 rmsk exon 107617914 107618086 1095 + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0018"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "-3929"; repStart "915"; chr2 rmsk exon 107618083 107618855 4706 + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0018"; repClass "LTR"; repEnd "2015"; repFamily "ERV1"; repLeft "-3000"; repStart "1236"; chr2 rmsk exon 107618843 107620549 9327 + . gene_id "PABLA_2q12.3"; transcript_id "PABLA_2q12.3"; locus "PABLA_2q12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0018"; repClass "LTR"; repEnd "4604"; repFamily "ERV1"; repLeft "-411"; repStart "2856"; ### ERVLB4_2q12.3b ### chr2 rmsk gene 107636812 107637958 . - . gene_id "ERVLB4_2q12.3b"; transcript_id "ERVLB4_2q12.3b"; locus "ERVLB4_2q12.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0199"; model_cov "844"; model_pct "14.8"; chr2 rmsk exon 107636812 107637157 433 - . gene_id "ERVLB4_2q12.3b"; transcript_id "ERVLB4_2q12.3b"; locus "ERVLB4_2q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0199"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "4088"; repStart "-1276"; chr2 rmsk exon 107637169 107637257 393 - . gene_id "ERVLB4_2q12.3b"; transcript_id "ERVLB4_2q12.3b"; locus "ERVLB4_2q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0199"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3932"; repStart "-1695"; chr2 rmsk exon 107637564 107637958 393 - . gene_id "ERVLB4_2q12.3b"; transcript_id "ERVLB4_2q12.3b"; locus "ERVLB4_2q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0199"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "3524"; repStart "-1783"; ### ERVLB4_2q12.3c ### chr2 rmsk gene 107759206 107761467 . - . gene_id "ERVLB4_2q12.3c"; transcript_id "ERVLB4_2q12.3c"; locus "ERVLB4_2q12.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0200"; model_cov "1391"; model_pct "24.3"; chr2 rmsk exon 107759206 107760316 4843 - . gene_id "ERVLB4_2q12.3c"; transcript_id "ERVLB4_2q12.3c"; locus "ERVLB4_2q12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0200"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "232"; repStart "-4321"; chr2 rmsk exon 107760625 107760811 4843 - . gene_id "ERVLB4_2q12.3c"; transcript_id "ERVLB4_2q12.3c"; locus "ERVLB4_2q12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0200"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "1"; repStart "-5483"; chr2 rmsk exon 107760942 107761323 1861 - . gene_id "ERVLB4_2q12.3c"; transcript_id "ERVLB4_2q12.3c"; locus "ERVLB4_2q12.3c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0200"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "1"; repStart "-72"; chr2 rmsk exon 107761383 107761467 428 - . gene_id "ERVLB4_2q12.3c"; transcript_id "ERVLB4_2q12.3c"; locus "ERVLB4_2q12.3c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0200"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "1"; repStart "-372"; ### HML3_2q12.3 ### chr2 rmsk gene 107942282 107948662 . - . gene_id "HML3_2q12.3"; transcript_id "HML3_2q12.3"; locus "HML3_2q12.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0028"; model_cov "5283"; model_pct "87.7"; chr2 rmsk exon 107942282 107942902 3361 - . gene_id "HML3_2q12.3"; transcript_id "HML3_2q12.3"; locus "HML3_2q12.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0028"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 107942903 107947537 36355 - . gene_id "HML3_2q12.3"; transcript_id "HML3_2q12.3"; locus "HML3_2q12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0028"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1360"; repStart "0"; chr2 rmsk exon 107947539 107948154 4416 - . gene_id "HML3_2q12.3"; transcript_id "HML3_2q12.3"; locus "HML3_2q12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0028"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr2 rmsk exon 107948155 107948662 3755 - . gene_id "HML3_2q12.3"; transcript_id "HML3_2q12.3"; locus "HML3_2q12.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0028"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_2q12.3c ### chr2 rmsk gene 108021564 108022094 . - . gene_id "ERV316A3_2q12.3c"; transcript_id "ERV316A3_2q12.3c"; locus "ERV316A3_2q12.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0281"; model_cov "579"; model_pct "11.1"; chr2 rmsk exon 108021564 108022094 1003 - . gene_id "ERV316A3_2q12.3c"; transcript_id "ERV316A3_2q12.3c"; locus "ERV316A3_2q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0281"; repClass "LTR"; repEnd "1777"; repFamily "ERVL"; repLeft "1198"; repStart "-3449"; ### ERVLE_2q12.3c ### chr2 rmsk gene 108047419 108048313 . - . gene_id "ERVLE_2q12.3c"; transcript_id "ERVLE_2q12.3c"; locus "ERVLE_2q12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0504"; model_cov "942"; model_pct "16.6"; chr2 rmsk exon 108047419 108048313 1894 - . gene_id "ERVLE_2q12.3c"; transcript_id "ERVLE_2q12.3c"; locus "ERVLE_2q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0504"; repClass "LTR"; repEnd "5087"; repFamily "ERVL"; repLeft "4145"; repStart "-580"; ### ERVLE_2q12.3d ### chr2 rmsk gene 108105563 108106128 . - . gene_id "ERVLE_2q12.3d"; transcript_id "ERVLE_2q12.3d"; locus "ERVLE_2q12.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0505"; model_cov "597"; model_pct "10.5"; chr2 rmsk exon 108105563 108106128 982 - . gene_id "ERVLE_2q12.3d"; transcript_id "ERVLE_2q12.3d"; locus "ERVLE_2q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0505"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "3225"; repStart "-1845"; ### ERVLE_2q12.3e ### chr2 rmsk gene 108174698 108176697 . + . gene_id "ERVLE_2q12.3e"; transcript_id "ERVLE_2q12.3e"; locus "ERVLE_2q12.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0506"; model_cov "1626"; model_pct "28.7"; chr2 rmsk exon 108174698 108175912 2328 + . gene_id "ERVLE_2q12.3e"; transcript_id "ERVLE_2q12.3e"; locus "ERVLE_2q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0506"; repClass "LTR"; repEnd "2294"; repFamily "ERVL"; repLeft "-3373"; repStart "1029"; chr2 rmsk exon 108176275 108176506 494 + . gene_id "ERVLE_2q12.3e"; transcript_id "ERVLE_2q12.3e"; locus "ERVLE_2q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0506"; repClass "LTR"; repEnd "2626"; repFamily "ERVL"; repLeft "-3041"; repStart "2390"; chr2 rmsk exon 108176577 108176697 314 + . gene_id "ERVLE_2q12.3e"; transcript_id "ERVLE_2q12.3e"; locus "ERVLE_2q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0506"; repClass "LTR"; repEnd "2869"; repFamily "ERVL"; repLeft "-2798"; repStart "2744"; ### ERV316A3_2q12.3d ### chr2 rmsk gene 108229967 108231578 . - . gene_id "ERV316A3_2q12.3d"; transcript_id "ERV316A3_2q12.3d"; locus "ERV316A3_2q12.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0283"; model_cov "1260"; model_pct "24.1"; chr2 rmsk exon 108229967 108230149 376 - . gene_id "ERV316A3_2q12.3d"; transcript_id "ERV316A3_2q12.3d"; locus "ERV316A3_2q12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0283"; repClass "LTR"; repEnd "3069"; repFamily "ERVL"; repLeft "2858"; repStart "-2157"; chr2 rmsk exon 108230283 108231186 1641 - . gene_id "ERV316A3_2q12.3d"; transcript_id "ERV316A3_2q12.3d"; locus "ERV316A3_2q12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0283"; repClass "LTR"; repEnd "2699"; repFamily "ERVL"; repLeft "1790"; repStart "-2527"; chr2 rmsk exon 108231410 108231578 1641 - . gene_id "ERV316A3_2q12.3d"; transcript_id "ERV316A3_2q12.3d"; locus "ERV316A3_2q12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0283"; repClass "LTR"; repEnd "1789"; repFamily "ERVL"; repLeft "1649"; repStart "-3437"; ### HUERSP3B_2q12.3 ### chr2 rmsk gene 108240388 108245565 . - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0021"; model_cov "4187"; model_pct "56.4"; chr2 rmsk exon 108240388 108241570 7429 - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0021"; repClass "LTR"; repEnd "6780"; repFamily "ERV1"; repLeft "5589"; repStart "-638"; chr2 rmsk exon 108241571 108241644 544 - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0021"; repClass "LTR"; repEnd "5449"; repFamily "ERV1"; repLeft "5376"; repStart "-1969"; chr2 rmsk exon 108241950 108242473 2932 - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0021"; repClass "LTR"; repEnd "4456"; repFamily "ERV1"; repLeft "3936"; repStart "-2962"; chr2 rmsk exon 108242457 108243154 4395 - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0021"; repClass "LTR"; repEnd "3794"; repFamily "ERV1"; repLeft "3073"; repStart "-3624"; chr2 rmsk exon 108243893 108245565 10779 - . gene_id "HUERSP3B_2q12.3"; transcript_id "HUERSP3B_2q12.3"; locus "HUERSP3B_2q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0021"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "960"; repStart "-4776"; ### ERVLB4_2q12.3d ### chr2 rmsk gene 108273665 108276585 . - . gene_id "ERVLB4_2q12.3d"; transcript_id "ERVLB4_2q12.3d"; locus "ERVLB4_2q12.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0201"; model_cov "2246"; model_pct "39.3"; chr2 rmsk exon 108273665 108274132 2298 - . gene_id "ERVLB4_2q12.3d"; transcript_id "ERVLB4_2q12.3d"; locus "ERVLB4_2q12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0201"; repClass "LTR"; repEnd "5533"; repFamily "ERVL"; repLeft "5037"; repStart "-181"; chr2 rmsk exon 108274127 108275256 9793 - . gene_id "ERVLB4_2q12.3d"; transcript_id "ERVLB4_2q12.3d"; locus "ERVLB4_2q12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0201"; repClass "LTR"; repEnd "3552"; repFamily "ERVL"; repLeft "2399"; repStart "-2162"; chr2 rmsk exon 108275992 108276585 9793 - . gene_id "ERVLB4_2q12.3d"; transcript_id "ERVLB4_2q12.3d"; locus "ERVLB4_2q12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0201"; repClass "LTR"; repEnd "2398"; repFamily "ERVL"; repLeft "1801"; repStart "-3316"; ### MER4_2q12.3 ### chr2 rmsk gene 108393697 108398883 . - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0092"; model_cov "3562"; model_pct "54.0"; chr2 rmsk exon 108393697 108394474 4224 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "4647"; repFamily "ERV1"; repLeft "3837"; repStart "-1951"; chr2 rmsk exon 108394791 108394998 1379 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "3013"; repFamily "ERV1"; repLeft "2803"; repStart "-3585"; chr2 rmsk exon 108395298 108395358 1379 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "2802"; repFamily "ERV1"; repLeft "2740"; repStart "-3796"; chr2 rmsk exon 108395614 108396344 11076 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "1723"; repStart "-4113"; chr2 rmsk exon 108396650 108397294 11076 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "1722"; repFamily "ERV1"; repLeft "1053"; repStart "-4876"; chr2 rmsk exon 108397591 108398376 11076 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "232"; repStart "-5546"; chr2 rmsk exon 108398406 108398609 11076 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0092"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "2"; repStart "-6367"; chr2 rmsk exon 108398614 108398883 1744 - . gene_id "MER4_2q12.3"; transcript_id "MER4_2q12.3"; locus "MER4_2q12.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0092"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "203"; repStart "-1"; ### HUERSP2_2q12.3 ### chr2 rmsk gene 108398884 108401531 . + . gene_id "HUERSP2_2q12.3"; transcript_id "HUERSP2_2q12.3"; locus "HUERSP2_2q12.3"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0022"; model_cov "1887"; model_pct "61.1"; chr2 rmsk exon 108398884 108399685 4763 + . gene_id "HUERSP2_2q12.3"; transcript_id "HUERSP2_2q12.3"; locus "HUERSP2_2q12.3"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0022"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 108399687 108401531 8399 + . gene_id "HUERSP2_2q12.3"; transcript_id "HUERSP2_2q12.3"; locus "HUERSP2_2q12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0022"; repClass "LTR"; repEnd "1889"; repFamily "ERV1"; repLeft "-1199"; repStart "2"; ### HERVIP10F_2q12.3 ### chr2 rmsk gene 108401530 108405283 . + . gene_id "HERVIP10F_2q12.3"; transcript_id "HERVIP10F_2q12.3"; locus "HERVIP10F_2q12.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0016"; model_cov "3409"; model_pct "44.1"; chr2 rmsk exon 108401530 108402315 4099 + . gene_id "HERVIP10F_2q12.3"; transcript_id "HERVIP10F_2q12.3"; locus "HERVIP10F_2q12.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0016"; repClass "LTR"; repEnd "4935"; repFamily "ERV1"; repLeft "-2802"; repStart "4149"; chr2 rmsk exon 108402306 108404791 10201 + . gene_id "HERVIP10F_2q12.3"; transcript_id "HERVIP10F_2q12.3"; locus "HERVIP10F_2q12.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0016"; repClass "LTR"; repEnd "7717"; repFamily "ERV1"; repLeft "-20"; repStart "5094"; chr2 rmsk exon 108404913 108405283 1740 + . gene_id "HERVIP10F_2q12.3"; transcript_id "HERVIP10F_2q12.3"; locus "HERVIP10F_2q12.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0016"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "184"; ### HARLEQUIN_2q12.3 ### chr2 rmsk gene 108523896 108531463 . + . gene_id "HARLEQUIN_2q12.3"; transcript_id "HARLEQUIN_2q12.3"; locus "HARLEQUIN_2q12.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0033"; model_cov "6493"; model_pct "94.2"; chr2 rmsk exon 108523896 108524357 3762 + . gene_id "HARLEQUIN_2q12.3"; transcript_id "HARLEQUIN_2q12.3"; locus "HARLEQUIN_2q12.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0033"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 108524358 108525937 9576 + . gene_id "HARLEQUIN_2q12.3"; transcript_id "HARLEQUIN_2q12.3"; locus "HARLEQUIN_2q12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0033"; repClass "LTR"; repEnd "1412"; repFamily "ERV1"; repLeft "-5484"; repStart "1"; chr2 rmsk exon 108525925 108531004 40350 + . gene_id "HARLEQUIN_2q12.3"; transcript_id "HARLEQUIN_2q12.3"; locus "HARLEQUIN_2q12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0033"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1814"; chr2 rmsk exon 108531005 108531463 3723 + . gene_id "HARLEQUIN_2q12.3"; transcript_id "HARLEQUIN_2q12.3"; locus "HARLEQUIN_2q12.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0033"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP1_2q13 ### chr2 rmsk gene 109091456 109097422 . + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0025"; model_cov "5977"; model_pct "95.4"; chr2 rmsk exon 109091456 109091599 1127 + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0025"; repClass "LTR"; repEnd "689"; repFamily "ERV1"; repLeft "-2"; repStart "547"; chr2 rmsk exon 109091603 109094547 17093 + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0025"; repClass "LTR"; repEnd "2242"; repFamily "ERV1"; repLeft "-4021"; repStart "-1273"; chr2 rmsk exon 109094861 109096787 17093 + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0025"; repClass "LTR"; repEnd "4788"; repFamily "ERV1"; repLeft "-1475"; repStart "2326"; chr2 rmsk exon 109096809 109097023 1646 + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0025"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "-161"; repStart "332"; chr2 rmsk exon 109097361 109097422 1646 + . gene_id "HUERSP1_2q13"; transcript_id "HUERSP1_2q13"; locus "HUERSP1_2q13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0025"; repClass "LTR"; repEnd "586"; repFamily "ERV1"; repLeft "-105"; repStart "531"; ### ERVLB4_2q13a ### chr2 rmsk gene 109458529 109463559 . - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0202"; model_cov "4563"; model_pct "79.9"; chr2 rmsk exon 109458529 109458567 1846 - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0202"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "359"; repStart "0"; chr2 rmsk exon 109458602 109458944 1846 - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0202"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "3"; repStart "-39"; chr2 rmsk exon 109458946 109461432 14263 - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0202"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "3170"; repStart "-1"; chr2 rmsk exon 109461605 109461662 255 - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0202"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "3174"; repStart "-2473"; chr2 rmsk exon 109461663 109463559 9832 - . gene_id "ERVLB4_2q13a"; transcript_id "ERVLB4_2q13a"; locus "ERVLB4_2q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0202"; repClass "LTR"; repEnd "3239"; repFamily "ERVL"; repLeft "1286"; repStart "-2475"; ### ERVLE_2q13 ### chr2 rmsk gene 109651164 109654480 . - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; category "insert*"; intModel "ERVL-E-int"; locid "ERVL-E-int_0507"; model_cov "1750"; model_pct "30.9"; chr2 rmsk exon 109651164 109651282 554 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "4528"; repStart "-914"; chr2 rmsk exon 109651321 109651603 1114 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; prev_strand "+"; repClass "LTR"; repEnd "3709"; repFamily "ERVL"; repLeft "-1958"; repStart "3399"; chr2 rmsk exon 109651741 109652217 970 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; prev_strand "+"; repClass "LTR"; repEnd "4451"; repFamily "ERVL"; repLeft "-1216"; repStart "3955"; chr2 rmsk exon 109652504 109652582 970 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; prev_strand "+"; repClass "LTR"; repEnd "4525"; repFamily "ERVL"; repLeft "-1142"; repStart "4452"; chr2 rmsk exon 109652592 109652800 652 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; repClass "LTR"; repEnd "3394"; repFamily "ERVL"; repLeft "3185"; repStart "-2273"; chr2 rmsk exon 109652800 109653102 419 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; repClass "LTR"; repEnd "1965"; repFamily "ERVL"; repLeft "1568"; repStart "-3702"; chr2 rmsk exon 109653432 109653781 871 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "1105"; repStart "-4181"; chr2 rmsk exon 109653940 109654480 1043 - . gene_id "ERVLE_2q13"; transcript_id "ERVLE_2q13"; locus "ERVLE_2q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0507"; repClass "LTR"; repEnd "821"; repFamily "ERVL"; repLeft "283"; repStart "-4846"; ### ERVLB4_2q13b ### chr2 rmsk gene 109990095 109992460 . - . gene_id "ERVLB4_2q13b"; transcript_id "ERVLB4_2q13b"; locus "ERVLB4_2q13b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0203"; model_cov "2339"; model_pct "40.9"; chr2 rmsk exon 109990095 109990664 3087 - . gene_id "ERVLB4_2q13b"; transcript_id "ERVLB4_2q13b"; locus "ERVLB4_2q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0203"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "4770"; repStart "-372"; chr2 rmsk exon 109990660 109991082 1498 - . gene_id "ERVLB4_2q13b"; transcript_id "ERVLB4_2q13b"; locus "ERVLB4_2q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0203"; repClass "LTR"; repEnd "4467"; repFamily "ERVL"; repLeft "4017"; repStart "-1247"; chr2 rmsk exon 109991081 109992204 5001 - . gene_id "ERVLB4_2q13b"; transcript_id "ERVLB4_2q13b"; locus "ERVLB4_2q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0203"; repClass "LTR"; repEnd "2276"; repFamily "ERVL"; repLeft "1140"; repStart "-3438"; chr2 rmsk exon 109992260 109992460 5001 - . gene_id "ERVLB4_2q13b"; transcript_id "ERVLB4_2q13b"; locus "ERVLB4_2q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0203"; repClass "LTR"; repEnd "1139"; repFamily "ERVL"; repLeft "958"; repStart "-4575"; ### MER101_2q13a ### chr2 rmsk gene 110015316 110017552 . - . gene_id "MER101_2q13a"; transcript_id "MER101_2q13a"; locus "MER101_2q13a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0055"; model_cov "2175"; model_pct "32.8"; chr2 rmsk exon 110015316 110015348 594 - . gene_id "MER101_2q13a"; transcript_id "MER101_2q13a"; locus "MER101_2q13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0055"; repClass "LTR"; repEnd "4919"; repFamily "ERV1"; repLeft "4881"; repStart "-1720"; chr2 rmsk exon 110015647 110016441 4001 - . gene_id "MER101_2q13a"; transcript_id "MER101_2q13a"; locus "MER101_2q13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0055"; repClass "LTR"; repEnd "4880"; repFamily "ERV1"; repLeft "3497"; repStart "-1759"; chr2 rmsk exon 110016860 110017552 4001 - . gene_id "MER101_2q13a"; transcript_id "MER101_2q13a"; locus "MER101_2q13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0055"; repClass "LTR"; repEnd "3188"; repFamily "ERV1"; repLeft "2434"; repStart "-3451"; ### HERVH_2q13 ### chr2 rmsk gene 110217884 110219194 . + . gene_id "HERVH_2q13"; transcript_id "HERVH_2q13"; locus "HERVH_2q13"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0156"; model_cov "773"; model_pct "10.0"; chr2 rmsk exon 110217884 110218330 3392 + . gene_id "HERVH_2q13"; transcript_id "HERVH_2q13"; locus "HERVH_2q13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0156"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 110218333 110219194 4840 + . gene_id "HERVH_2q13"; transcript_id "HERVH_2q13"; locus "HERVH_2q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0156"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "-6939"; repStart "1"; ### MER101_2q13b ### chr2 rmsk gene 110353840 110356081 . + . gene_id "MER101_2q13b"; transcript_id "MER101_2q13b"; locus "MER101_2q13b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0056"; model_cov "2175"; model_pct "32.8"; chr2 rmsk exon 110353840 110354537 3974 + . gene_id "MER101_2q13b"; transcript_id "MER101_2q13b"; locus "MER101_2q13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0056"; repClass "LTR"; repEnd "3188"; repFamily "ERV1"; repLeft "-3451"; repStart "2434"; chr2 rmsk exon 110354956 110355750 3974 + . gene_id "MER101_2q13b"; transcript_id "MER101_2q13b"; locus "MER101_2q13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0056"; repClass "LTR"; repEnd "4880"; repFamily "ERV1"; repLeft "-1759"; repStart "3497"; chr2 rmsk exon 110356049 110356081 594 + . gene_id "MER101_2q13b"; transcript_id "MER101_2q13b"; locus "MER101_2q13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0056"; repClass "LTR"; repEnd "4919"; repFamily "ERV1"; repLeft "-1720"; repStart "4881"; ### ERVLB4_2q13c ### chr2 rmsk gene 110379003 110381368 . + . gene_id "ERVLB4_2q13c"; transcript_id "ERVLB4_2q13c"; locus "ERVLB4_2q13c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0204"; model_cov "2353"; model_pct "41.2"; chr2 rmsk exon 110379003 110379189 989 + . gene_id "ERVLB4_2q13c"; transcript_id "ERVLB4_2q13c"; locus "ERVLB4_2q13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0204"; repClass "LTR"; repEnd "1143"; repFamily "ERVL"; repLeft "-4571"; repStart "957"; chr2 rmsk exon 110379295 110380382 4451 + . gene_id "ERVLB4_2q13c"; transcript_id "ERVLB4_2q13c"; locus "ERVLB4_2q13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0204"; repClass "LTR"; repEnd "2276"; repFamily "ERVL"; repLeft "-3438"; repStart "1131"; chr2 rmsk exon 110380381 110380803 1498 + . gene_id "ERVLB4_2q13c"; transcript_id "ERVLB4_2q13c"; locus "ERVLB4_2q13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0204"; repClass "LTR"; repEnd "4467"; repFamily "ERVL"; repLeft "-1247"; repStart "4017"; chr2 rmsk exon 110380799 110381368 3087 + . gene_id "ERVLB4_2q13c"; transcript_id "ERVLB4_2q13c"; locus "ERVLB4_2q13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0204"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "-372"; repStart "4770"; ### HERVE_2q13 ### chr2 rmsk gene 111760570 111762379 . + . gene_id "HERVE_2q13"; transcript_id "HERVE_2q13"; locus "HERVE_2q13"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0014"; model_cov "1633"; model_pct "20.9"; chr2 rmsk exon 111760570 111760679 790 + . gene_id "HERVE_2q13"; transcript_id "HERVE_2q13"; locus "HERVE_2q13"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0014"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "391"; chr2 rmsk exon 111760680 111762332 9258 + . gene_id "HERVE_2q13"; transcript_id "HERVE_2q13"; locus "HERVE_2q13"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0014"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "-6179"; repStart "1"; chr2 rmsk exon 111762334 111762379 300 + . gene_id "HERVE_2q13"; transcript_id "HERVE_2q13"; locus "HERVE_2q13"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0014"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-65"; repStart "391"; ### HERVW_2q13 ### chr2 rmsk gene 112039346 112044989 . - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0041"; model_cov "5878"; model_pct "68.1"; chr2 rmsk exon 112039346 112039670 2654 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr2 rmsk exon 112039671 112039964 2339 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 112039955 112039993 306 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 112039987 112040228 5225 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5778"; repStart "-2607"; chr2 rmsk exon 112040675 112042366 10969 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "5777"; repFamily "ERV1"; repLeft "2430"; repStart "-2849"; chr2 rmsk exon 112042350 112043619 9654 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "757"; repStart "-6610"; chr2 rmsk exon 112043778 112044476 5606 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "1"; repStart "-7923"; chr2 rmsk exon 112044492 112044989 3621 - . gene_id "HERVW_2q13"; transcript_id "HERVW_2q13"; locus "HERVW_2q13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0041"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "256"; repStart "-6"; ### ERVLE_2q14.1a ### chr2 rmsk gene 112259253 112262683 . + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0509"; model_cov "1151"; model_pct "20.3"; chr2 rmsk exon 112259253 112259513 3875 + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0509"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "-877"; repStart "4505"; chr2 rmsk exon 112259722 112260072 3875 + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0509"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "-522"; repStart "4791"; chr2 rmsk exon 112260695 112260807 3875 + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0509"; repClass "LTR"; repEnd "5244"; repFamily "ERVL"; repLeft "-423"; repStart "5146"; chr2 rmsk exon 112261433 112261873 3875 + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0509"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "-8"; repStart "5245"; chr2 rmsk exon 112262219 112262683 1760 + . gene_id "ERVLE_2q14.1a"; transcript_id "ERVLE_2q14.1a"; locus "ERVLE_2q14.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0509"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "-158"; repStart "3"; ### HARLEQUIN_2q14.1 ### chr2 rmsk gene 112347167 112354003 . - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0034"; model_cov "5667"; model_pct "82.2"; chr2 rmsk exon 112347167 112347904 33010 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "6321"; repFamily "ERV1"; repLeft "5595"; repStart "-575"; chr2 rmsk exon 112348207 112350917 33010 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "5594"; repFamily "ERV1"; repLeft "2869"; repStart "-1302"; chr2 rmsk exon 112350949 112352014 33010 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "2868"; repFamily "ERV1"; repLeft "1807"; repStart "-4028"; chr2 rmsk exon 112351998 112352407 7557 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "1419"; repFamily "ERV1"; repLeft "985"; repStart "-5477"; chr2 rmsk exon 112352458 112353168 7557 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "263"; repStart "-5912"; chr2 rmsk exon 112353542 112354003 3445 - . gene_id "HARLEQUIN_2q14.1"; transcript_id "HARLEQUIN_2q14.1"; locus "HARLEQUIN_2q14.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0034"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_2q14.1a ### chr2 rmsk gene 112455599 112459611 . + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0285"; model_cov "2617"; model_pct "50.1"; chr2 rmsk exon 112455599 112455719 5759 + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0285"; repClass "LTR"; repEnd "2177"; repFamily "ERVL"; repLeft "-3049"; repStart "2052"; chr2 rmsk exon 112456024 112456334 5759 + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0285"; repClass "LTR"; repEnd "2467"; repFamily "ERVL"; repLeft "-2759"; repStart "2178"; chr2 rmsk exon 112456602 112457734 5759 + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0285"; repClass "LTR"; repEnd "3614"; repFamily "ERVL"; repLeft "-1612"; repStart "2468"; chr2 rmsk exon 112458101 112459171 5759 + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0285"; repClass "LTR"; repEnd "4672"; repFamily "ERVL"; repLeft "-554"; repStart "3615"; chr2 rmsk exon 112459175 112459611 1386 + . gene_id "ERV316A3_2q14.1a"; transcript_id "ERV316A3_2q14.1a"; locus "ERV316A3_2q14.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0285"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-1"; repStart "2"; ### ERV316A3_2q14.1b ### chr2 rmsk gene 112601737 112604332 . + . gene_id "ERV316A3_2q14.1b"; transcript_id "ERV316A3_2q14.1b"; locus "ERV316A3_2q14.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0286"; model_cov "2342"; model_pct "44.8"; chr2 rmsk exon 112601737 112602136 1734 + . gene_id "ERV316A3_2q14.1b"; transcript_id "ERV316A3_2q14.1b"; locus "ERV316A3_2q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0286"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "-3597"; repStart "1242"; chr2 rmsk exon 112602436 112603471 1734 + . gene_id "ERV316A3_2q14.1b"; transcript_id "ERV316A3_2q14.1b"; locus "ERV316A3_2q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0286"; repClass "LTR"; repEnd "2386"; repFamily "ERVL"; repLeft "-2840"; repStart "1189"; chr2 rmsk exon 112603559 112603890 808 + . gene_id "ERV316A3_2q14.1b"; transcript_id "ERV316A3_2q14.1b"; locus "ERV316A3_2q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0286"; repClass "LTR"; repEnd "2895"; repFamily "ERVL"; repLeft "-2331"; repStart "2560"; chr2 rmsk exon 112603924 112604332 842 + . gene_id "ERV316A3_2q14.1b"; transcript_id "ERV316A3_2q14.1b"; locus "ERV316A3_2q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0286"; repClass "LTR"; repEnd "3490"; repFamily "ERVL"; repLeft "-1736"; repStart "3067"; ### ERV316A3_2q14.1c ### chr2 rmsk gene 112605241 112606628 . - . gene_id "ERV316A3_2q14.1c"; transcript_id "ERV316A3_2q14.1c"; locus "ERV316A3_2q14.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0287"; model_cov "1122"; model_pct "21.5"; chr2 rmsk exon 112605241 112605640 1838 - . gene_id "ERV316A3_2q14.1c"; transcript_id "ERV316A3_2q14.1c"; locus "ERV316A3_2q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0287"; repClass "LTR"; repEnd "1903"; repFamily "ERVL"; repLeft "1500"; repStart "-3323"; chr2 rmsk exon 112605936 112606628 1838 - . gene_id "ERV316A3_2q14.1c"; transcript_id "ERV316A3_2q14.1c"; locus "ERV316A3_2q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0287"; repClass "LTR"; repEnd "1499"; repFamily "ERVL"; repLeft "780"; repStart "-3727"; ### MER4_2q14.1a ### chr2 rmsk gene 112849107 112853024 . + . gene_id "MER4_2q14.1a"; transcript_id "MER4_2q14.1a"; locus "MER4_2q14.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0093"; model_cov "2367"; model_pct "35.9"; chr2 rmsk exon 112849107 112849557 3469 + . gene_id "MER4_2q14.1a"; transcript_id "MER4_2q14.1a"; locus "MER4_2q14.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0093"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 112849561 112849883 2636 + . gene_id "MER4_2q14.1a"; transcript_id "MER4_2q14.1a"; locus "MER4_2q14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0093"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-6259"; repStart "1"; chr2 rmsk exon 112850320 112851616 4783 + . gene_id "MER4_2q14.1a"; transcript_id "MER4_2q14.1a"; locus "MER4_2q14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0093"; repClass "LTR"; repEnd "1722"; repFamily "ERV1"; repLeft "-4876"; repStart "273"; chr2 rmsk exon 112852505 112853024 3223 + . gene_id "MER4_2q14.1a"; transcript_id "MER4_2q14.1a"; locus "MER4_2q14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0093"; repClass "LTR"; repEnd "2292"; repFamily "ERV1"; repLeft "-4306"; repStart "1712"; ### MER4_2q14.1b ### chr2 rmsk gene 112857065 112863541 . + . gene_id "MER4_2q14.1b"; transcript_id "MER4_2q14.1b"; locus "MER4_2q14.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0095"; model_cov "3717"; model_pct "56.3"; chr2 rmsk exon 112857065 112857502 2382 + . gene_id "MER4_2q14.1b"; transcript_id "MER4_2q14.1b"; locus "MER4_2q14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0095"; repClass "LTR"; repEnd "3220"; repFamily "ERV1"; repLeft "-3378"; repStart "2737"; chr2 rmsk exon 112859935 112860433 2028 + . gene_id "MER4_2q14.1b"; transcript_id "MER4_2q14.1b"; locus "MER4_2q14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0095"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3206"; chr2 rmsk exon 112860401 112863078 16931 + . gene_id "MER4_2q14.1b"; transcript_id "MER4_2q14.1b"; locus "MER4_2q14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0095"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chr2 rmsk exon 112863087 112863541 3215 + . gene_id "MER4_2q14.1b"; transcript_id "MER4_2q14.1b"; locus "MER4_2q14.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0095"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q14.1b ### chr2 rmsk gene 112969376 112971790 . + . gene_id "ERVLE_2q14.1b"; transcript_id "ERVLE_2q14.1b"; locus "ERVLE_2q14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0511"; model_cov "1744"; model_pct "30.8"; chr2 rmsk exon 112969376 112969716 449 + . gene_id "ERVLE_2q14.1b"; transcript_id "ERVLE_2q14.1b"; locus "ERVLE_2q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0511"; repClass "LTR"; repEnd "647"; repFamily "ERVL"; repLeft "-5020"; repStart "297"; chr2 rmsk exon 112969939 112970119 290 + . gene_id "ERVLE_2q14.1b"; transcript_id "ERVLE_2q14.1b"; locus "ERVLE_2q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0511"; repClass "LTR"; repEnd "1147"; repFamily "ERVL"; repLeft "-4520"; repStart "971"; chr2 rmsk exon 112970270 112970853 1837 + . gene_id "ERVLE_2q14.1b"; transcript_id "ERVLE_2q14.1b"; locus "ERVLE_2q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0511"; repClass "LTR"; repEnd "1769"; repFamily "ERVL"; repLeft "-3898"; repStart "1143"; chr2 rmsk exon 112971218 112971790 1837 + . gene_id "ERVLE_2q14.1b"; transcript_id "ERVLE_2q14.1b"; locus "ERVLE_2q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0511"; repClass "LTR"; repEnd "2362"; repFamily "ERVL"; repLeft "-3305"; repStart "1770"; ### ERV316A3_2q14.1d ### chr2 rmsk gene 112999149 113000464 . - . gene_id "ERV316A3_2q14.1d"; transcript_id "ERV316A3_2q14.1d"; locus "ERV316A3_2q14.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0288"; model_cov "694"; model_pct "13.3"; chr2 rmsk exon 112999149 112999452 1508 - . gene_id "ERV316A3_2q14.1d"; transcript_id "ERV316A3_2q14.1d"; locus "ERV316A3_2q14.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0288"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "10"; repStart "-158"; chr2 rmsk exon 112999460 112999883 1468 - . gene_id "ERV316A3_2q14.1d"; transcript_id "ERV316A3_2q14.1d"; locus "ERV316A3_2q14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0288"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4778"; repStart "-1"; chr2 rmsk exon 113000207 113000464 716 - . gene_id "ERV316A3_2q14.1d"; transcript_id "ERV316A3_2q14.1d"; locus "ERV316A3_2q14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0288"; repClass "LTR"; repEnd "4337"; repFamily "ERVL"; repLeft "4090"; repStart "-889"; ### ERV316A3_2q14.1e ### chr2 rmsk gene 113643838 113645005 . - . gene_id "ERV316A3_2q14.1e"; transcript_id "ERV316A3_2q14.1e"; locus "ERV316A3_2q14.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0289"; model_cov "816"; model_pct "15.6"; chr2 rmsk exon 113643838 113644057 627 - . gene_id "ERV316A3_2q14.1e"; transcript_id "ERV316A3_2q14.1e"; locus "ERV316A3_2q14.1e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0289"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "201"; repStart "-9"; chr2 rmsk exon 113644197 113645005 943 - . gene_id "ERV316A3_2q14.1e"; transcript_id "ERV316A3_2q14.1e"; locus "ERV316A3_2q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0289"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "4408"; repStart "-2"; ### ERVL_2q14.1 ### chr2 rmsk gene 113994716 113996825 . - . gene_id "ERVL_2q14.1"; transcript_id "ERVL_2q14.1"; locus "ERVL_2q14.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0042"; model_cov "1230"; model_pct "21.4"; chr2 rmsk exon 113994716 113995088 2651 - . gene_id "ERVL_2q14.1"; transcript_id "ERVL_2q14.1"; locus "ERVL_2q14.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0042"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "179"; repStart "-8"; chr2 rmsk exon 113995127 113995350 2651 - . gene_id "ERVL_2q14.1"; transcript_id "ERVL_2q14.1"; locus "ERVL_2q14.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0042"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "1"; repStart "-329"; chr2 rmsk exon 113995351 113995672 6960 - . gene_id "ERVL_2q14.1"; transcript_id "ERVL_2q14.1"; locus "ERVL_2q14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0042"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5429"; repStart "0"; chr2 rmsk exon 113995941 113996825 6960 - . gene_id "ERVL_2q14.1"; transcript_id "ERVL_2q14.1"; locus "ERVL_2q14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0042"; repClass "LTR"; repEnd "5428"; repFamily "ERVL"; repLeft "4526"; repStart "-329"; ### HERVL_2q14.1 ### chr2 rmsk gene 114311239 114317016 . + . gene_id "HERVL_2q14.1"; transcript_id "HERVL_2q14.1"; locus "HERVL_2q14.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0168"; model_cov "5288"; model_pct "93.5"; chr2 rmsk exon 114311239 114311794 1693 + . gene_id "HERVL_2q14.1"; transcript_id "HERVL_2q14.1"; locus "HERVL_2q14.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0168"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr2 rmsk exon 114311795 114312945 7247 + . gene_id "HERVL_2q14.1"; transcript_id "HERVL_2q14.1"; locus "HERVL_2q14.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0168"; repClass "LTR"; repEnd "1190"; repFamily "ERVL"; repLeft "-4464"; repStart "1"; chr2 rmsk exon 114312939 114317016 28486 + . gene_id "HERVL_2q14.1"; transcript_id "HERVL_2q14.1"; locus "HERVL_2q14.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0168"; repClass "LTR"; repEnd "5616"; repFamily "ERVL"; repLeft "-38"; repStart "1517"; ### ERVLB4_2q14.1a ### chr2 rmsk gene 114373968 114380342 . - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0209"; model_cov "5710"; model_pct "99.9"; chr2 rmsk exon 114373968 114374004 2665 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "516"; repStart "0"; chr2 rmsk exon 114374048 114374571 2665 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "10"; repStart "-38"; chr2 rmsk exon 114374582 114378724 19171 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "940"; repStart "-2"; chr2 rmsk exon 114378783 114379714 19171 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "939"; repFamily "ERVL"; repLeft "1"; repStart "-4775"; chr2 rmsk exon 114379715 114379763 2658 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "509"; repStart "0"; chr2 rmsk exon 114379842 114380342 2658 - . gene_id "ERVLB4_2q14.1a"; transcript_id "ERVLB4_2q14.1a"; locus "ERVLB4_2q14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0209"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "1"; repStart "-46"; ### ERV316A3_2q14.1f ### chr2 rmsk gene 115097871 115101670 . - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0290"; model_cov "2416"; model_pct "46.2"; chr2 rmsk exon 115097871 115098269 917 - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0290"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "31"; repStart "0"; chr2 rmsk exon 115098301 115098339 2199 - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0290"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "5188"; repStart "-1"; chr2 rmsk exon 115098677 115099002 2199 - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0290"; repClass "LTR"; repEnd "5187"; repFamily "ERVL"; repLeft "4837"; repStart "-39"; chr2 rmsk exon 115099329 115100162 2199 - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0290"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4035"; repStart "-390"; chr2 rmsk exon 115100461 115101670 2199 - . gene_id "ERV316A3_2q14.1f"; transcript_id "ERV316A3_2q14.1f"; locus "ERV316A3_2q14.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0290"; repClass "LTR"; repEnd "4034"; repFamily "ERVL"; repLeft "2806"; repStart "-1192"; ### HERVFRD_2q14.1 ### chr2 rmsk gene 115118915 115123788 . - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0028"; model_cov "3578"; model_pct "49.7"; chr2 rmsk exon 115118915 115119510 3815 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0028"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "-134"; chr2 rmsk exon 115119511 115120463 5755 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0028"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6201"; repStart "-8"; chr2 rmsk exon 115120504 115121891 3263 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0028"; repClass "LTR"; repEnd "4106"; repFamily "ERV1"; repLeft "2784"; repStart "-3099"; chr2 rmsk exon 115121883 115122516 1313 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0028"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1302"; repStart "-5355"; chr2 rmsk exon 115122517 115123078 2521 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0028"; repClass "LTR"; repEnd "713"; repFamily "ERV1"; repLeft "1"; repStart "-6492"; chr2 rmsk exon 115123081 115123788 3859 - . gene_id "HERVFRD_2q14.1"; transcript_id "HERVFRD_2q14.1"; locus "HERVFRD_2q14.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0028"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "1"; repStart "-24"; ### HERVIP10F_2q14.1 ### chr2 rmsk gene 115189073 115194732 . - . gene_id "HERVIP10F_2q14.1"; transcript_id "HERVIP10F_2q14.1"; locus "HERVIP10F_2q14.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0017"; model_cov "4118"; model_pct "53.2"; chr2 rmsk exon 115189073 115189585 2900 - . gene_id "HERVIP10F_2q14.1"; transcript_id "HERVIP10F_2q14.1"; locus "HERVIP10F_2q14.1"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0017"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "1"; repStart "-79"; chr2 rmsk exon 115189586 115192593 13075 - . gene_id "HERVIP10F_2q14.1"; transcript_id "HERVIP10F_2q14.1"; locus "HERVIP10F_2q14.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0017"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "4670"; repStart "0"; chr2 rmsk exon 115193480 115194220 4776 - . gene_id "HERVIP10F_2q14.1"; transcript_id "HERVIP10F_2q14.1"; locus "HERVIP10F_2q14.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0017"; repClass "LTR"; repEnd "4465"; repFamily "ERV1"; repLeft "3722"; repStart "-3272"; chr2 rmsk exon 115194429 115194732 1622 - . gene_id "HERVIP10F_2q14.1"; transcript_id "HERVIP10F_2q14.1"; locus "HERVIP10F_2q14.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0017"; repClass "LTR"; repEnd "3809"; repFamily "ERV1"; repLeft "3501"; repStart "-3928"; ### HERVIP10FH_2q14.1 ### chr2 rmsk gene 115192568 115193480 . - . gene_id "HERVIP10FH_2q14.1"; transcript_id "HERVIP10FH_2q14.1"; locus "HERVIP10FH_2q14.1"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0026"; model_cov "923"; model_pct "18.1"; chr2 rmsk exon 115192568 115193480 5915 - . gene_id "HERVIP10FH_2q14.1"; transcript_id "HERVIP10FH_2q14.1"; locus "HERVIP10FH_2q14.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0026"; repClass "LTR"; repEnd "2692"; repFamily "ERV1"; repLeft "1769"; repStart "-2410"; ### MER61_2q14.1a ### chr2 rmsk gene 115406933 115408459 . - . gene_id "MER61_2q14.1a"; transcript_id "MER61_2q14.1a"; locus "MER61_2q14.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0053"; model_cov "912"; model_pct "17.5"; chr2 rmsk exon 115406933 115407331 2352 - . gene_id "MER61_2q14.1a"; transcript_id "MER61_2q14.1a"; locus "MER61_2q14.1a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0053"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr2 rmsk exon 115407332 115408213 5350 - . gene_id "MER61_2q14.1a"; transcript_id "MER61_2q14.1a"; locus "MER61_2q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0053"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "4304"; repStart "-1"; chr2 rmsk exon 115408235 115408459 1496 - . gene_id "MER61_2q14.1a"; transcript_id "MER61_2q14.1a"; locus "MER61_2q14.1a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0053"; repClass "LTR"; repEnd "223"; repFamily "ERV1"; repLeft "1"; repStart "-204"; ### ERVLE_2q14.1c ### chr2 rmsk gene 115735366 115737912 . - . gene_id "ERVLE_2q14.1c"; transcript_id "ERVLE_2q14.1c"; locus "ERVLE_2q14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0512"; model_cov "2369"; model_pct "41.8"; chr2 rmsk exon 115735366 115735518 724 - . gene_id "ERVLE_2q14.1c"; transcript_id "ERVLE_2q14.1c"; locus "ERVLE_2q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0512"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "5105"; repStart "-410"; chr2 rmsk exon 115735833 115736651 727 - . gene_id "ERVLE_2q14.1c"; transcript_id "ERVLE_2q14.1c"; locus "ERVLE_2q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0512"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "4094"; repStart "-563"; chr2 rmsk exon 115736717 115736775 251 - . gene_id "ERVLE_2q14.1c"; transcript_id "ERVLE_2q14.1c"; locus "ERVLE_2q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0512"; repClass "LTR"; repEnd "4213"; repFamily "ERVL"; repLeft "4155"; repStart "-1454"; chr2 rmsk exon 115736837 115737912 2080 - . gene_id "ERVLE_2q14.1c"; transcript_id "ERVLE_2q14.1c"; locus "ERVLE_2q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0512"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "2742"; repStart "-1776"; ### ERVLB4_2q14.1b ### chr2 rmsk gene 115953258 115955296 . + . gene_id "ERVLB4_2q14.1b"; transcript_id "ERVLB4_2q14.1b"; locus "ERVLB4_2q14.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0210"; model_cov "2069"; model_pct "36.2"; chr2 rmsk exon 115953258 115955296 10443 + . gene_id "ERVLB4_2q14.1b"; transcript_id "ERVLB4_2q14.1b"; locus "ERVLB4_2q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0210"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "-1391"; repStart "2254"; ### ERVLB4_2q14.1c ### chr2 rmsk gene 115966591 115967852 . + . gene_id "ERVLB4_2q14.1c"; transcript_id "ERVLB4_2q14.1c"; locus "ERVLB4_2q14.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0211"; model_cov "911"; model_pct "15.9"; chr2 rmsk exon 115966591 115967445 3025 + . gene_id "ERVLB4_2q14.1c"; transcript_id "ERVLB4_2q14.1c"; locus "ERVLB4_2q14.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0211"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "4796"; chr2 rmsk exon 115967451 115967508 245 + . gene_id "ERVLB4_2q14.1c"; transcript_id "ERVLB4_2q14.1c"; locus "ERVLB4_2q14.1c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0211"; repClass "LTR"; repEnd "-8"; repFamily "ERVL"; repLeft "-405"; repStart "-66"; chr2 rmsk exon 115967602 115967852 1056 + . gene_id "ERVLB4_2q14.1c"; transcript_id "ERVLB4_2q14.1c"; locus "ERVLB4_2q14.1c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0211"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-67"; repStart "71"; ### ERV316A3_2q14.1g ### chr2 rmsk gene 116098422 116100709 . + . gene_id "ERV316A3_2q14.1g"; transcript_id "ERV316A3_2q14.1g"; locus "ERV316A3_2q14.1g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0291"; model_cov "1632"; model_pct "31.2"; chr2 rmsk exon 116098422 116098534 325 + . gene_id "ERV316A3_2q14.1g"; transcript_id "ERV316A3_2q14.1g"; locus "ERV316A3_2q14.1g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0291"; repClass "LTR"; repEnd "129"; repFamily "ERVL"; repLeft "-293"; repStart "1"; chr2 rmsk exon 116098543 116099858 4146 + . gene_id "ERV316A3_2q14.1g"; transcript_id "ERV316A3_2q14.1g"; locus "ERV316A3_2q14.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0291"; repClass "LTR"; repEnd "4880"; repFamily "ERVL"; repLeft "-346"; repStart "3509"; chr2 rmsk exon 116099993 116100259 615 + . gene_id "ERV316A3_2q14.1g"; transcript_id "ERV316A3_2q14.1g"; locus "ERV316A3_2q14.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0291"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "-85"; repStart "4880"; chr2 rmsk exon 116100350 116100709 811 + . gene_id "ERV316A3_2q14.1g"; transcript_id "ERV316A3_2q14.1g"; locus "ERV316A3_2q14.1g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0291"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "-7"; repStart "35"; ### PRIMA41_2q14.1 ### chr2 rmsk gene 116158721 116161399 . - . gene_id "PRIMA41_2q14.1"; transcript_id "PRIMA41_2q14.1"; locus "PRIMA41_2q14.1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0021"; model_cov "2351"; model_pct "30.3"; chr2 rmsk exon 116158721 116159189 996 - . gene_id "PRIMA41_2q14.1"; transcript_id "PRIMA41_2q14.1"; locus "PRIMA41_2q14.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0021"; repClass "LTR"; repEnd "3830"; repFamily "ERV1"; repLeft "3357"; repStart "-3926"; chr2 rmsk exon 116159269 116160940 996 - . gene_id "PRIMA41_2q14.1"; transcript_id "PRIMA41_2q14.1"; locus "PRIMA41_2q14.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0021"; repClass "LTR"; repEnd "3356"; repFamily "ERV1"; repLeft "1693"; repStart "-4400"; chr2 rmsk exon 116161157 116161399 345 - . gene_id "PRIMA41_2q14.1"; transcript_id "PRIMA41_2q14.1"; locus "PRIMA41_2q14.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0021"; repClass "LTR"; repEnd "2826"; repFamily "ERV1"; repLeft "2611"; repStart "-4930"; ### HERVH_2q14.1a ### chr2 rmsk gene 116183753 116189710 . - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0157"; model_cov "5291"; model_pct "68.6"; chr2 rmsk exon 116183753 116184164 2698 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 116184165 116184543 2217 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 116184542 116184756 1267 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 116184758 116186460 7764 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr2 rmsk exon 116186451 116186600 961 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 116186595 116188773 14810 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "800"; repStart "-4726"; chr2 rmsk exon 116188832 116189297 3098 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr2 rmsk exon 116189300 116189710 2741 - . gene_id "HERVH_2q14.1a"; transcript_id "HERVH_2q14.1a"; locus "HERVH_2q14.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0157"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML3_2q14.1 ### chr2 rmsk gene 116251352 116256139 . + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0029"; model_cov "3791"; model_pct "63.0"; chr2 rmsk exon 116251352 116251865 4169 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 116251866 116252456 4407 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr2 rmsk exon 116252457 116253972 12564 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1280"; chr2 rmsk exon 116253973 116254203 1901 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr2 rmsk exon 116254189 116255631 11387 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4581"; chr2 rmsk exon 116255632 116256139 3931 + . gene_id "HML3_2q14.1"; transcript_id "HML3_2q14.1"; locus "HML3_2q14.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0029"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_2q14.1 ### chr2 rmsk gene 116282415 116289614 . + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0022"; model_cov "5646"; model_pct "66.9"; chr2 rmsk exon 116282415 116282568 832 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-373"; repStart "1"; chr2 rmsk exon 116282584 116282859 1891 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "4969"; repFamily "ERV1"; repLeft "-3467"; repStart "4717"; chr2 rmsk exon 116282843 116287186 33321 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "6779"; repFamily "ERV1"; repLeft "-1657"; repStart "2440"; chr2 rmsk exon 116287186 116288173 7769 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "8374"; repFamily "ERV1"; repLeft "-62"; repStart "7380"; chr2 rmsk exon 116289071 116289138 7769 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "8375"; chr2 rmsk exon 116289139 116289614 3346 + . gene_id "HERV9_2q14.1"; transcript_id "HERV9_2q14.1"; locus "HERV9_2q14.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0022"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_2q14.1h ### chr2 rmsk gene 116421964 116423932 . + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0292"; model_cov "1500"; model_pct "28.7"; chr2 rmsk exon 116421964 116422218 787 + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0292"; repClass "LTR"; repEnd "2977"; repFamily "ERVL"; repLeft "-2249"; repStart "2719"; chr2 rmsk exon 116422191 116422585 285 + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0292"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2111"; repStart "2696"; chr2 rmsk exon 116422591 116422766 480 + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0292"; repClass "LTR"; repEnd "3595"; repFamily "ERVL"; repLeft "-1631"; repStart "3416"; chr2 rmsk exon 116423004 116423486 1428 + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0292"; repClass "LTR"; repEnd "4152"; repFamily "ERVL"; repLeft "-1074"; repStart "3660"; chr2 rmsk exon 116423783 116423932 1428 + . gene_id "ERV316A3_2q14.1h"; transcript_id "ERV316A3_2q14.1h"; locus "ERV316A3_2q14.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0292"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-921"; repStart "4153"; ### HERV3_2q14.1 ### chr2 rmsk gene 116467844 116473211 . + . gene_id "HERV3_2q14.1"; transcript_id "HERV3_2q14.1"; locus "HERV3_2q14.1"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0007"; model_cov "2080"; model_pct "24.7"; chr2 rmsk exon 116467844 116467929 496 + . gene_id "HERV3_2q14.1"; transcript_id "HERV3_2q14.1"; locus "HERV3_2q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0007"; repClass "LTR"; repEnd "2293"; repFamily "ERV1"; repLeft "-6133"; repStart "2207"; chr2 rmsk exon 116469159 116469432 302 + . gene_id "HERV3_2q14.1"; transcript_id "HERV3_2q14.1"; locus "HERV3_2q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0007"; repClass "LTR"; repEnd "2525"; repFamily "ERV1"; repLeft "-5901"; repStart "2257"; chr2 rmsk exon 116471559 116472115 760 + . gene_id "HERV3_2q14.1"; transcript_id "HERV3_2q14.1"; locus "HERV3_2q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0007"; repClass "LTR"; repEnd "4755"; repFamily "ERV1"; repLeft "-3671"; repStart "3817"; chr2 rmsk exon 116472665 116473211 556 + . gene_id "HERV3_2q14.1"; transcript_id "HERV3_2q14.1"; locus "HERV3_2q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0007"; repClass "LTR"; repEnd "5542"; repFamily "ERV1"; repLeft "-2884"; repStart "4754"; ### LTR57_2q14.1 ### chr2 rmsk gene 116467981 116468754 . + . gene_id "LTR57_2q14.1"; transcript_id "LTR57_2q14.1"; locus "LTR57_2q14.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0023"; model_cov "771"; model_pct "14.4"; chr2 rmsk exon 116467981 116468754 3273 + . gene_id "LTR57_2q14.1"; transcript_id "LTR57_2q14.1"; locus "LTR57_2q14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0023"; repClass "LTR"; repEnd "1074"; repFamily "ERVL"; repLeft "-4269"; repStart "303"; ### ERVLB4_2q14.1d ### chr2 rmsk gene 116487282 116488672 . + . gene_id "ERVLB4_2q14.1d"; transcript_id "ERVLB4_2q14.1d"; locus "ERVLB4_2q14.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0213"; model_cov "1270"; model_pct "22.2"; chr2 rmsk exon 116487282 116488562 6945 + . gene_id "ERVLB4_2q14.1d"; transcript_id "ERVLB4_2q14.1d"; locus "ERVLB4_2q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0213"; repClass "LTR"; repEnd "4524"; repFamily "ERVL"; repLeft "-1190"; repStart "3254"; chr2 rmsk exon 116488574 116488672 341 + . gene_id "ERVLB4_2q14.1d"; transcript_id "ERVLB4_2q14.1d"; locus "ERVLB4_2q14.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0213"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "-64"; repStart "403"; ### ERVLE_2q14.1d ### chr2 rmsk gene 116491747 116492952 . + . gene_id "ERVLE_2q14.1d"; transcript_id "ERVLE_2q14.1d"; locus "ERVLE_2q14.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0513"; model_cov "1226"; model_pct "21.6"; chr2 rmsk exon 116491747 116492807 3103 + . gene_id "ERVLE_2q14.1d"; transcript_id "ERVLE_2q14.1d"; locus "ERVLE_2q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0513"; repClass "LTR"; repEnd "3561"; repFamily "ERVL"; repLeft "-2106"; repStart "2482"; chr2 rmsk exon 116492810 116492952 712 + . gene_id "ERVLE_2q14.1d"; transcript_id "ERVLE_2q14.1d"; locus "ERVLE_2q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0513"; repClass "LTR"; repEnd "4286"; repFamily "ERVL"; repLeft "-1381"; repStart "4139"; ### ERV316A3_2q14.1i ### chr2 rmsk gene 116599329 116601162 . - . gene_id "ERV316A3_2q14.1i"; transcript_id "ERV316A3_2q14.1i"; locus "ERV316A3_2q14.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0293"; model_cov "1085"; model_pct "20.8"; chr2 rmsk exon 116599329 116599743 884 - . gene_id "ERV316A3_2q14.1i"; transcript_id "ERV316A3_2q14.1i"; locus "ERV316A3_2q14.1i"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0293"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "3"; repStart "-9"; chr2 rmsk exon 116600045 116600949 1935 - . gene_id "ERV316A3_2q14.1i"; transcript_id "ERV316A3_2q14.1i"; locus "ERV316A3_2q14.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0293"; repClass "LTR"; repEnd "4968"; repFamily "ERVL"; repLeft "4063"; repStart "-258"; chr2 rmsk exon 116600949 116601062 511 - . gene_id "ERV316A3_2q14.1i"; transcript_id "ERV316A3_2q14.1i"; locus "ERV316A3_2q14.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0293"; repClass "LTR"; repEnd "4006"; repFamily "ERVL"; repLeft "3908"; repStart "-1220"; chr2 rmsk exon 116601088 116601162 511 - . gene_id "ERV316A3_2q14.1i"; transcript_id "ERV316A3_2q14.1i"; locus "ERV316A3_2q14.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0293"; repClass "LTR"; repEnd "3907"; repFamily "ERVL"; repLeft "3825"; repStart "-1319"; ### HERVL66_2q14.1 ### chr2 rmsk gene 116717117 116721589 . + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0008"; model_cov "3246"; model_pct "75.0"; chr2 rmsk exon 116717117 116717782 3838 + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0008"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 116717783 116719544 12955 + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0008"; repClass "LTR"; repEnd "1786"; repFamily "ERVL"; repLeft "-2543"; repStart "1"; chr2 rmsk exon 116719535 116720231 4847 + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0008"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-977"; repStart "2654"; chr2 rmsk exon 116720221 116720902 3859 + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0008"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "-1"; repStart "3565"; chr2 rmsk exon 116720904 116721589 3643 + . gene_id "HERVL66_2q14.1"; transcript_id "HERVL66_2q14.1"; locus "HERVL66_2q14.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0008"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### MER61_2q14.1b ### chr2 rmsk gene 116753992 116758985 . + . gene_id "MER61_2q14.1b"; transcript_id "MER61_2q14.1b"; locus "MER61_2q14.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0054"; model_cov "4445"; model_pct "85.2"; chr2 rmsk exon 116753992 116754306 1530 + . gene_id "MER61_2q14.1b"; transcript_id "MER61_2q14.1b"; locus "MER61_2q14.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0054"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 116754307 116754840 2203 + . gene_id "MER61_2q14.1b"; transcript_id "MER61_2q14.1b"; locus "MER61_2q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0054"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "1"; chr2 rmsk exon 116754926 116758671 22480 + . gene_id "MER61_2q14.1b"; transcript_id "MER61_2q14.1b"; locus "MER61_2q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0054"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1320"; chr2 rmsk exon 116758672 116758985 1554 + . gene_id "MER61_2q14.1b"; transcript_id "MER61_2q14.1b"; locus "MER61_2q14.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0054"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_2q14.1a ### chr2 rmsk gene 116781094 116785334 . + . gene_id "MER101_2q14.1a"; transcript_id "MER101_2q14.1a"; locus "MER101_2q14.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0057"; model_cov "3664"; model_pct "55.2"; chr2 rmsk exon 116781094 116782072 2667 + . gene_id "MER101_2q14.1a"; transcript_id "MER101_2q14.1a"; locus "MER101_2q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0057"; repClass "LTR"; repEnd "4261"; repFamily "ERV1"; repLeft "-2378"; repStart "3338"; chr2 rmsk exon 116782070 116784653 3238 + . gene_id "MER101_2q14.1a"; transcript_id "MER101_2q14.1a"; locus "MER101_2q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0057"; repClass "LTR"; repEnd "4586"; repFamily "ERV1"; repLeft "-2053"; repStart "2365"; chr2 rmsk exon 116784835 116785334 828 + . gene_id "MER101_2q14.1a"; transcript_id "MER101_2q14.1a"; locus "MER101_2q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0057"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6119"; ### HERVH_2q14.1b ### chr2 rmsk gene 117130629 117135078 . + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0158"; model_cov "3610"; model_pct "46.8"; chr2 rmsk exon 117130629 117130996 2051 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 117130997 117131432 1119 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr2 rmsk exon 117131491 117133147 9558 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "2419"; repFamily "ERV1"; repLeft "-5294"; repStart "800"; chr2 rmsk exon 117133144 117133931 2359 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "4336"; repFamily "ERV1"; repLeft "-3377"; repStart "3608"; chr2 rmsk exon 117133920 117134108 1169 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6758"; chr2 rmsk exon 117134086 117134158 328 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7638"; chr2 rmsk exon 117134160 117134712 3442 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr2 rmsk exon 117134713 117135078 1984 + . gene_id "HERVH_2q14.1b"; transcript_id "HERVH_2q14.1b"; locus "HERVH_2q14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0158"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q14.1e ### chr2 rmsk gene 117183830 117185641 . - . gene_id "ERVLE_2q14.1e"; transcript_id "ERVLE_2q14.1e"; locus "ERVLE_2q14.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0514"; model_cov "1341"; model_pct "23.7"; chr2 rmsk exon 117183830 117184651 1506 - . gene_id "ERVLE_2q14.1e"; transcript_id "ERVLE_2q14.1e"; locus "ERVLE_2q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0514"; repClass "LTR"; repEnd "1707"; repFamily "ERVL"; repLeft "846"; repStart "-3960"; chr2 rmsk exon 117184953 117185045 1506 - . gene_id "ERVLE_2q14.1e"; transcript_id "ERVLE_2q14.1e"; locus "ERVLE_2q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0514"; repClass "LTR"; repEnd "845"; repFamily "ERVL"; repLeft "750"; repStart "-4822"; chr2 rmsk exon 117185266 117185641 1506 - . gene_id "ERVLE_2q14.1e"; transcript_id "ERVLE_2q14.1e"; locus "ERVLE_2q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0514"; repClass "LTR"; repEnd "749"; repFamily "ERVL"; repLeft "364"; repStart "-4918"; ### ERVLE_2q14.1f ### chr2 rmsk gene 117186356 117186962 . + . gene_id "ERVLE_2q14.1f"; transcript_id "ERVLE_2q14.1f"; locus "ERVLE_2q14.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0515"; model_cov "622"; model_pct "11.0"; chr2 rmsk exon 117186356 117186665 835 + . gene_id "ERVLE_2q14.1f"; transcript_id "ERVLE_2q14.1f"; locus "ERVLE_2q14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0515"; repClass "LTR"; repEnd "4968"; repFamily "ERVL"; repLeft "-699"; repStart "4627"; chr2 rmsk exon 117186683 117186962 936 + . gene_id "ERVLE_2q14.1f"; transcript_id "ERVLE_2q14.1f"; locus "ERVLE_2q14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0515"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "-378"; repStart "5008"; ### ERVLE_2q14.1g ### chr2 rmsk gene 117249218 117250085 . - . gene_id "ERVLE_2q14.1g"; transcript_id "ERVLE_2q14.1g"; locus "ERVLE_2q14.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0516"; model_cov "919"; model_pct "16.2"; chr2 rmsk exon 117249218 117250085 1711 - . gene_id "ERVLE_2q14.1g"; transcript_id "ERVLE_2q14.1g"; locus "ERVLE_2q14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0516"; repClass "LTR"; repEnd "5379"; repFamily "ERVL"; repLeft "4460"; repStart "-288"; ### HERVH_2q14.1c ### chr2 rmsk gene 117278753 117284509 . + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0159"; model_cov "4911"; model_pct "63.7"; chr2 rmsk exon 117278753 117279203 3496 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 117279206 117282154 20562 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 117282134 117282280 872 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 117282271 117282774 3294 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 117282777 117283438 4033 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 117283440 117283655 1432 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 117283659 117284028 2450 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7327"; chr2 rmsk exon 117284029 117284509 3246 + . gene_id "HERVH_2q14.1c"; transcript_id "HERVH_2q14.1c"; locus "HERVH_2q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0159"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q14.1j ### chr2 rmsk gene 117292358 117294729 . + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0294"; model_cov "1852"; model_pct "35.4"; chr2 rmsk exon 117292358 117292530 490 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "1259"; repFamily "ERVL"; repLeft "-3967"; repStart "1092"; chr2 rmsk exon 117292521 117293042 1170 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "-2564"; repStart "2134"; chr2 rmsk exon 117293057 117293299 751 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "3059"; repFamily "ERVL"; repLeft "-2167"; repStart "2804"; chr2 rmsk exon 117293417 117293846 1316 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "-751"; repStart "4053"; chr2 rmsk exon 117293879 117293986 262 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "4576"; repFamily "ERVL"; repLeft "-650"; repStart "4472"; chr2 rmsk exon 117294009 117294398 951 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "5078"; repFamily "ERVL"; repLeft "-148"; repStart "4702"; chr2 rmsk exon 117294504 117294729 444 + . gene_id "ERV316A3_2q14.1j"; transcript_id "ERV316A3_2q14.1j"; locus "ERV316A3_2q14.1j"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0294"; repClass "LTR"; repEnd "219"; repFamily "ERVL"; repLeft "-203"; repStart "1"; ### MER101_2q14.1b ### chr2 rmsk gene 117368978 117370114 . + . gene_id "MER101_2q14.1b"; transcript_id "MER101_2q14.1b"; locus "MER101_2q14.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0058"; model_cov "1457"; model_pct "21.9"; chr2 rmsk exon 117368978 117370114 2556 + . gene_id "MER101_2q14.1b"; transcript_id "MER101_2q14.1b"; locus "MER101_2q14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0058"; repClass "LTR"; repEnd "3428"; repFamily "ERV1"; repLeft "-3211"; repStart "1971"; ### MER4B_2q14.1 ### chr2 rmsk gene 117371344 117371879 . + . gene_id "MER4B_2q14.1"; transcript_id "MER4B_2q14.1"; locus "MER4B_2q14.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0059"; model_cov "851"; model_pct "12.6"; chr2 rmsk exon 117371344 117371475 428 + . gene_id "MER4B_2q14.1"; transcript_id "MER4B_2q14.1"; locus "MER4B_2q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0059"; repClass "LTR"; repEnd "2686"; repFamily "ERV1"; repLeft "-4072"; repStart "2588"; chr2 rmsk exon 117371481 117371879 1673 + . gene_id "MER4B_2q14.1"; transcript_id "MER4B_2q14.1"; locus "MER4B_2q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0059"; repClass "LTR"; repEnd "5775"; repFamily "ERV1"; repLeft "-983"; repStart "5022"; ### HUERSP3_2q14.1 ### chr2 rmsk gene 117466492 117471190 . - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0024"; model_cov "3071"; model_pct "34.4"; chr2 rmsk exon 117466492 117467064 3829 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "32"; repStart "0"; chr2 rmsk exon 117467070 117467765 7344 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "8227"; repStart "-4"; chr2 rmsk exon 117468076 117468558 7344 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "8226"; repFamily "ERV1"; repLeft "7743"; repStart "-693"; chr2 rmsk exon 117468556 117469796 8037 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "6547"; repFamily "ERV1"; repLeft "5299"; repStart "-2372"; chr2 rmsk exon 117469976 117470746 3458 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "1227"; repFamily "ERV1"; repLeft "575"; repStart "-7692"; chr2 rmsk exon 117470754 117471190 1879 - . gene_id "HUERSP3_2q14.1"; transcript_id "HUERSP3_2q14.1"; locus "HUERSP3_2q14.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0024"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "-129"; ### ERV316A3_2q14.1k ### chr2 rmsk gene 117633211 117641397 . - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0295"; model_cov "4534"; model_pct "86.8"; chr2 rmsk exon 117633211 117633631 1063 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "8"; repStart "0"; chr2 rmsk exon 117633640 117634335 1480 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "4482"; repStart "-19"; chr2 rmsk exon 117634367 117635045 7209 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3637"; repStart "-796"; chr2 rmsk exon 117635109 117636307 7209 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "3636"; repFamily "ERVL"; repLeft "2439"; repStart "-1590"; chr2 rmsk exon 117638594 117640382 7209 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "2437"; repFamily "ERVL"; repLeft "618"; repStart "-2789"; chr2 rmsk exon 117640973 117641397 1081 - . gene_id "ERV316A3_2q14.1k"; transcript_id "ERV316A3_2q14.1k"; locus "ERV316A3_2q14.1k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0295"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "1"; repStart "-28"; ### MER101_2q14.1c ### chr2 rmsk gene 118024789 118026310 . - . gene_id "MER101_2q14.1c"; transcript_id "MER101_2q14.1c"; locus "MER101_2q14.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0060"; model_cov "1035"; model_pct "15.6"; chr2 rmsk exon 118024789 118024909 503 - . gene_id "MER101_2q14.1c"; transcript_id "MER101_2q14.1c"; locus "MER101_2q14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0060"; repClass "LTR"; repEnd "4251"; repFamily "ERV1"; repLeft "4111"; repStart "-2388"; chr2 rmsk exon 118024892 118025151 469 - . gene_id "MER101_2q14.1c"; transcript_id "MER101_2q14.1c"; locus "MER101_2q14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0060"; repClass "LTR"; repEnd "2961"; repFamily "ERV1"; repLeft "2785"; repStart "-3678"; chr2 rmsk exon 118025347 118025690 1193 - . gene_id "MER101_2q14.1c"; transcript_id "MER101_2q14.1c"; locus "MER101_2q14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0060"; repClass "LTR"; repEnd "2053"; repFamily "ERV1"; repLeft "1651"; repStart "-4586"; chr2 rmsk exon 118026000 118026310 1193 - . gene_id "MER101_2q14.1c"; transcript_id "MER101_2q14.1c"; locus "MER101_2q14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0060"; repClass "LTR"; repEnd "1650"; repFamily "ERV1"; repLeft "1333"; repStart "-4989"; ### ERVLB4_2q14.2a ### chr2 rmsk gene 118523082 118526546 . + . gene_id "ERVLB4_2q14.2a"; transcript_id "ERVLB4_2q14.2a"; locus "ERVLB4_2q14.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0215"; model_cov "3174"; model_pct "55.5"; chr2 rmsk exon 118523082 118523987 4087 + . gene_id "ERVLB4_2q14.2a"; transcript_id "ERVLB4_2q14.2a"; locus "ERVLB4_2q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0215"; repClass "LTR"; repEnd "2016"; repFamily "ERVL"; repLeft "-3698"; repStart "1093"; chr2 rmsk exon 118524363 118526546 11777 + . gene_id "ERVLB4_2q14.2a"; transcript_id "ERVLB4_2q14.2a"; locus "ERVLB4_2q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0215"; repClass "LTR"; repEnd "4268"; repFamily "ERVL"; repLeft "-1446"; repStart "2017"; ### HERVIP10FH_2q14.2 ### chr2 rmsk gene 118949646 118953399 . - . gene_id "HERVIP10FH_2q14.2"; transcript_id "HERVIP10FH_2q14.2"; locus "HERVIP10FH_2q14.2"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0027"; model_cov "3095"; model_pct "60.7"; chr2 rmsk exon 118949646 118952837 18611 - . gene_id "HERVIP10FH_2q14.2"; transcript_id "HERVIP10FH_2q14.2"; locus "HERVIP10FH_2q14.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0027"; repClass "LTR"; repEnd "3097"; repFamily "ERV1"; repLeft "2"; repStart "-2005"; chr2 rmsk exon 118952840 118953399 3014 - . gene_id "HERVIP10FH_2q14.2"; transcript_id "HERVIP10FH_2q14.2"; locus "HERVIP10FH_2q14.2"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0027"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11_2q14.2 ### chr2 rmsk gene 119373755 119376815 . - . gene_id "HERVK11_2q14.2"; transcript_id "HERVK11_2q14.2"; locus "HERVK11_2q14.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0016"; model_cov "1949"; model_pct "24.5"; chr2 rmsk exon 119373755 119374838 4629 - . gene_id "HERVK11_2q14.2"; transcript_id "HERVK11_2q14.2"; locus "HERVK11_2q14.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0016"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 119374839 119376781 16071 - . gene_id "HERVK11_2q14.2"; transcript_id "HERVK11_2q14.2"; locus "HERVK11_2q14.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0016"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6004"; repStart "0"; chr2 rmsk exon 119376783 119376815 255 - . gene_id "HERVK11_2q14.2"; transcript_id "HERVK11_2q14.2"; locus "HERVK11_2q14.2"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0016"; repClass "LTR"; repEnd "33"; repFamily "ERVK"; repLeft "1"; repStart "-1038"; ### PABLA_2q14.2 ### chr2 rmsk gene 119379009 119382220 . - . gene_id "PABLA_2q14.2"; transcript_id "PABLA_2q14.2"; locus "PABLA_2q14.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0020"; model_cov "2312"; model_pct "46.1"; chr2 rmsk exon 119379009 119379795 3237 - . gene_id "PABLA_2q14.2"; transcript_id "PABLA_2q14.2"; locus "PABLA_2q14.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0020"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4198"; repStart "0"; chr2 rmsk exon 119380469 119381272 10002 - . gene_id "PABLA_2q14.2"; transcript_id "PABLA_2q14.2"; locus "PABLA_2q14.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0020"; repClass "LTR"; repEnd "4774"; repFamily "ERV1"; repLeft "3965"; repStart "-241"; chr2 rmsk exon 119381561 119382220 10002 - . gene_id "PABLA_2q14.2"; transcript_id "PABLA_2q14.2"; locus "PABLA_2q14.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0020"; repClass "LTR"; repEnd "3964"; repFamily "ERV1"; repLeft "3278"; repStart "-1051"; ### MER4_2q14.2 ### chr2 rmsk gene 119379796 119382533 . - . gene_id "MER4_2q14.2"; transcript_id "MER4_2q14.2"; locus "MER4_2q14.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0097"; model_cov "745"; model_pct "11.3"; chr2 rmsk exon 119379796 119380243 3382 - . gene_id "MER4_2q14.2"; transcript_id "MER4_2q14.2"; locus "MER4_2q14.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0097"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 119380255 119380459 1226 - . gene_id "MER4_2q14.2"; transcript_id "MER4_2q14.2"; locus "MER4_2q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0097"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6366"; repStart "-5"; chr2 rmsk exon 119382223 119382533 1210 - . gene_id "MER4_2q14.2"; transcript_id "MER4_2q14.2"; locus "MER4_2q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0097"; repClass "LTR"; repEnd "801"; repFamily "ERV1"; repLeft "283"; repStart "-5797"; ### HUERSP3_2q14.2 ### chr2 rmsk gene 119853828 119857650 . - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0025"; model_cov "2185"; model_pct "24.5"; chr2 rmsk exon 119853828 119854445 3200 - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0025"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 119854446 119855797 14113 - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0025"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "7563"; repStart "-1"; chr2 rmsk exon 119856104 119857071 14113 - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0025"; repClass "LTR"; repEnd "7562"; repFamily "ERV1"; repLeft "6732"; repStart "-1357"; chr2 rmsk exon 119857216 119857249 526 - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0025"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "98"; repStart "-518"; chr2 rmsk exon 119857553 119857650 526 - . gene_id "HUERSP3_2q14.2"; transcript_id "HUERSP3_2q14.2"; locus "HUERSP3_2q14.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0025"; repClass "LTR"; repEnd "97"; repFamily "ERV1"; repLeft "4"; repStart "-548"; ### HUERSP1_2q14.2 ### chr2 rmsk gene 120029543 120030555 . + . gene_id "HUERSP1_2q14.2"; transcript_id "HUERSP1_2q14.2"; locus "HUERSP1_2q14.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0026"; model_cov "720"; model_pct "11.5"; chr2 rmsk exon 120029543 120030001 2498 + . gene_id "HUERSP1_2q14.2"; transcript_id "HUERSP1_2q14.2"; locus "HUERSP1_2q14.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0026"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5543"; chr2 rmsk exon 120030002 120030555 3352 + . gene_id "HUERSP1_2q14.2"; transcript_id "HUERSP1_2q14.2"; locus "HUERSP1_2q14.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0026"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "-174"; repStart "1"; ### ERVLB4_2q14.2b ### chr2 rmsk gene 120619874 120622034 . - . gene_id "ERVLB4_2q14.2b"; transcript_id "ERVLB4_2q14.2b"; locus "ERVLB4_2q14.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0216"; model_cov "1788"; model_pct "31.3"; chr2 rmsk exon 120619874 120620982 1224 - . gene_id "ERVLB4_2q14.2b"; transcript_id "ERVLB4_2q14.2b"; locus "ERVLB4_2q14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0216"; repClass "LTR"; repEnd "3444"; repFamily "ERVL"; repLeft "2143"; repStart "-2270"; chr2 rmsk exon 120621066 120621384 922 - . gene_id "ERVLB4_2q14.2b"; transcript_id "ERVLB4_2q14.2b"; locus "ERVLB4_2q14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0216"; repClass "LTR"; repEnd "2202"; repFamily "ERVL"; repLeft "1845"; repStart "-3512"; chr2 rmsk exon 120621915 120622034 293 - . gene_id "ERVLB4_2q14.2b"; transcript_id "ERVLB4_2q14.2b"; locus "ERVLB4_2q14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0216"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "1053"; repStart "-4531"; ### ERVLE_2q14.2 ### chr2 rmsk gene 121319387 121323125 . + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0518"; model_cov "1842"; model_pct "32.5"; chr2 rmsk exon 121319387 121319723 718 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "1890"; repFamily "ERVL"; repLeft "-3777"; repStart "1537"; chr2 rmsk exon 121320011 121320542 863 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "2483"; repFamily "ERVL"; repLeft "-3184"; repStart "1848"; chr2 rmsk exon 121321202 121321223 666 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "3196"; repFamily "ERVL"; repLeft "-2471"; repStart "3181"; chr2 rmsk exon 121321529 121321768 666 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "3457"; repFamily "ERVL"; repLeft "-2210"; repStart "3197"; chr2 rmsk exon 121321819 121321911 990 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "3627"; repFamily "ERVL"; repLeft "-2040"; repStart "3537"; chr2 rmsk exon 121322518 121322842 990 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1698"; repStart "3628"; chr2 rmsk exon 121322979 121323125 521 + . gene_id "ERVLE_2q14.2"; transcript_id "ERVLE_2q14.2"; locus "ERVLE_2q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0518"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "-1359"; repStart "4160"; ### LTR23_2q14.3 ### chr2 rmsk gene 121679495 121680336 . - . gene_id "LTR23_2q14.3"; transcript_id "LTR23_2q14.3"; locus "LTR23_2q14.3"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0022"; model_cov "515"; model_pct "10.1"; chr2 rmsk exon 121679495 121679911 1465 - . gene_id "LTR23_2q14.3"; transcript_id "LTR23_2q14.3"; locus "LTR23_2q14.3"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0022"; repClass "LTR"; repEnd "1741"; repFamily "ERV1"; repLeft "1342"; repStart "-3382"; chr2 rmsk exon 121680216 121680336 1465 - . gene_id "LTR23_2q14.3"; transcript_id "LTR23_2q14.3"; locus "LTR23_2q14.3"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0022"; repClass "LTR"; repEnd "1341"; repFamily "ERV1"; repLeft "1225"; repStart "-3782"; ### HERVIP10FH_2q14.3a ### chr2 rmsk gene 121680605 121682019 . - . gene_id "HERVIP10FH_2q14.3a"; transcript_id "HERVIP10FH_2q14.3a"; locus "HERVIP10FH_2q14.3a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0028"; model_cov "1211"; model_pct "23.7"; chr2 rmsk exon 121680605 121681667 5685 - . gene_id "HERVIP10FH_2q14.3a"; transcript_id "HERVIP10FH_2q14.3a"; locus "HERVIP10FH_2q14.3a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0028"; repClass "LTR"; repEnd "1869"; repFamily "ERV1"; repLeft "1104"; repStart "-3233"; chr2 rmsk exon 121681648 121682019 1478 - . gene_id "HERVIP10FH_2q14.3a"; transcript_id "HERVIP10FH_2q14.3a"; locus "HERVIP10FH_2q14.3a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0028"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "61"; repStart "-4595"; ### HERVIP10FH_2q14.3b ### chr2 rmsk gene 121682072 121683452 . - . gene_id "HERVIP10FH_2q14.3b"; transcript_id "HERVIP10FH_2q14.3b"; locus "HERVIP10FH_2q14.3b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0029"; model_cov "639"; model_pct "12.5"; chr2 rmsk exon 121682072 121682907 2744 - . gene_id "HERVIP10FH_2q14.3b"; transcript_id "HERVIP10FH_2q14.3b"; locus "HERVIP10FH_2q14.3b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0029"; repClass "LTR"; repEnd "640"; repFamily "ERV1"; repLeft "1"; repStart "-4462"; chr2 rmsk exon 121682921 121683452 2840 - . gene_id "HERVIP10FH_2q14.3b"; transcript_id "HERVIP10FH_2q14.3b"; locus "HERVIP10FH_2q14.3b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10FH-int_0029"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "1"; repStart "-54"; ### HERV3_2q14.3 ### chr2 rmsk gene 121684030 121686558 . - . gene_id "HERV3_2q14.3"; transcript_id "HERV3_2q14.3"; locus "HERV3_2q14.3"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0008"; model_cov "2063"; model_pct "24.5"; chr2 rmsk exon 121684030 121684226 358 - . gene_id "HERV3_2q14.3"; transcript_id "HERV3_2q14.3"; locus "HERV3_2q14.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0008"; repClass "LTR"; repEnd "2119"; repFamily "ERV1"; repLeft "1895"; repStart "-6307"; chr2 rmsk exon 121684418 121684757 1689 - . gene_id "HERV3_2q14.3"; transcript_id "HERV3_2q14.3"; locus "HERV3_2q14.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0008"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "1721"; repStart "-6346"; chr2 rmsk exon 121685129 121686558 3792 - . gene_id "HERV3_2q14.3"; transcript_id "HERV3_2q14.3"; locus "HERV3_2q14.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0008"; repClass "LTR"; repEnd "1481"; repFamily "ERV1"; repLeft "1"; repStart "-6945"; ### ERVLE_2q14.3a ### chr2 rmsk gene 121912683 121913849 . + . gene_id "ERVLE_2q14.3a"; transcript_id "ERVLE_2q14.3a"; locus "ERVLE_2q14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0519"; model_cov "922"; model_pct "16.3"; chr2 rmsk exon 121912683 121912705 1504 + . gene_id "ERVLE_2q14.3a"; transcript_id "ERVLE_2q14.3a"; locus "ERVLE_2q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0519"; repClass "LTR"; repEnd "1258"; repFamily "ERVL"; repLeft "-4409"; repStart "1236"; chr2 rmsk exon 121912960 121913727 1504 + . gene_id "ERVLE_2q14.3a"; transcript_id "ERVLE_2q14.3a"; locus "ERVLE_2q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0519"; repClass "LTR"; repEnd "2073"; repFamily "ERVL"; repLeft "-3594"; repStart "1259"; chr2 rmsk exon 121913763 121913849 1504 + . gene_id "ERVLE_2q14.3a"; transcript_id "ERVLE_2q14.3a"; locus "ERVLE_2q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0519"; repClass "LTR"; repEnd "2160"; repFamily "ERVL"; repLeft "-3507"; repStart "2074"; ### ERVLB4_2q14.3a ### chr2 rmsk gene 121914480 121915167 . - . gene_id "ERVLB4_2q14.3a"; transcript_id "ERVLB4_2q14.3a"; locus "ERVLB4_2q14.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0218"; model_cov "654"; model_pct "11.4"; chr2 rmsk exon 121914480 121914739 596 - . gene_id "ERVLB4_2q14.3a"; transcript_id "ERVLB4_2q14.3a"; locus "ERVLB4_2q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0218"; repClass "LTR"; repEnd "5110"; repFamily "ERVL"; repLeft "4838"; repStart "-604"; chr2 rmsk exon 121914777 121915167 698 - . gene_id "ERVLB4_2q14.3a"; transcript_id "ERVLB4_2q14.3a"; locus "ERVLB4_2q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0218"; repClass "LTR"; repEnd "2874"; repFamily "ERVL"; repLeft "2492"; repStart "-2840"; ### ERVLE_2q14.3b ### chr2 rmsk gene 122170256 122172600 . + . gene_id "ERVLE_2q14.3b"; transcript_id "ERVLE_2q14.3b"; locus "ERVLE_2q14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0520"; model_cov "1795"; model_pct "31.7"; chr2 rmsk exon 122170256 122170540 554 + . gene_id "ERVLE_2q14.3b"; transcript_id "ERVLE_2q14.3b"; locus "ERVLE_2q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0520"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-5270"; repStart "118"; chr2 rmsk exon 122170622 122170773 2944 + . gene_id "ERVLE_2q14.3b"; transcript_id "ERVLE_2q14.3b"; locus "ERVLE_2q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0520"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "-4884"; repStart "648"; chr2 rmsk exon 122171280 122172420 2944 + . gene_id "ERVLE_2q14.3b"; transcript_id "ERVLE_2q14.3b"; locus "ERVLE_2q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0520"; repClass "LTR"; repEnd "1964"; repFamily "ERVL"; repLeft "-3703"; repStart "784"; chr2 rmsk exon 122172398 122172600 722 + . gene_id "ERVLE_2q14.3b"; transcript_id "ERVLE_2q14.3b"; locus "ERVLE_2q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0520"; repClass "LTR"; repEnd "2224"; repFamily "ERVL"; repLeft "-3443"; repStart "2023"; ### ERVLE_2q14.3c ### chr2 rmsk gene 122200220 122201707 . - . gene_id "ERVLE_2q14.3c"; transcript_id "ERVLE_2q14.3c"; locus "ERVLE_2q14.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0521"; model_cov "1534"; model_pct "27.1"; chr2 rmsk exon 122200220 122201707 4319 - . gene_id "ERVLE_2q14.3c"; transcript_id "ERVLE_2q14.3c"; locus "ERVLE_2q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0521"; repClass "LTR"; repEnd "5265"; repFamily "ERVL"; repLeft "3731"; repStart "-402"; ### ERV316A3_2q14.3a ### chr2 rmsk gene 122705347 122708324 . - . gene_id "ERV316A3_2q14.3a"; transcript_id "ERV316A3_2q14.3a"; locus "ERV316A3_2q14.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0297"; model_cov "1703"; model_pct "32.6"; chr2 rmsk exon 122705347 122706454 2328 - . gene_id "ERV316A3_2q14.3a"; transcript_id "ERV316A3_2q14.3a"; locus "ERV316A3_2q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0297"; repClass "LTR"; repEnd "3961"; repFamily "ERVL"; repLeft "2783"; repStart "-1265"; chr2 rmsk exon 122707784 122708324 913 - . gene_id "ERV316A3_2q14.3a"; transcript_id "ERV316A3_2q14.3a"; locus "ERV316A3_2q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0297"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "2481"; repStart "-2220"; ### ERVLB4_2q14.3b ### chr2 rmsk gene 122826918 122830736 . + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0219"; model_cov "3541"; model_pct "62.0"; chr2 rmsk exon 122826918 122827723 3570 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "935"; repFamily "ERVL"; repLeft "-4779"; repStart "27"; chr2 rmsk exon 122827761 122828004 1830 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "1189"; repFamily "ERVL"; repLeft "-4525"; repStart "936"; chr2 rmsk exon 122828006 122828113 459 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "1186"; repFamily "ERVL"; repLeft "-4528"; repStart "1080"; chr2 rmsk exon 122828111 122828244 706 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "3896"; repFamily "ERVL"; repLeft "-1818"; repStart "3759"; chr2 rmsk exon 122828237 122828590 1952 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "1547"; repFamily "ERVL"; repLeft "-4167"; repStart "1184"; chr2 rmsk exon 122828581 122828729 911 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "2777"; repFamily "ERVL"; repLeft "-2937"; repStart "2625"; chr2 rmsk exon 122829090 122830736 8932 + . gene_id "ERVLB4_2q14.3b"; transcript_id "ERVLB4_2q14.3b"; locus "ERVLB4_2q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0219"; repClass "LTR"; repEnd "4401"; repFamily "ERVL"; repLeft "-1313"; repStart "2779"; ### MER41_2q14.3a ### chr2 rmsk gene 122838227 122838753 . + . gene_id "MER41_2q14.3a"; transcript_id "MER41_2q14.3a"; locus "MER41_2q14.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0055"; model_cov "592"; model_pct "10.0"; chr2 rmsk exon 122838227 122838753 987 + . gene_id "MER41_2q14.3a"; transcript_id "MER41_2q14.3a"; locus "MER41_2q14.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0055"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-5255"; repStart "99"; ### ERV316A3_2q14.3b ### chr2 rmsk gene 122896115 122896824 . + . gene_id "ERV316A3_2q14.3b"; transcript_id "ERV316A3_2q14.3b"; locus "ERV316A3_2q14.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0298"; model_cov "719"; model_pct "13.8"; chr2 rmsk exon 122896115 122896824 634 + . gene_id "ERV316A3_2q14.3b"; transcript_id "ERV316A3_2q14.3b"; locus "ERV316A3_2q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0298"; repClass "LTR"; repEnd "1470"; repFamily "ERVL"; repLeft "-3756"; repStart "751"; ### HUERSP2_2q14.3 ### chr2 rmsk gene 122923174 122926160 . - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0023"; model_cov "1651"; model_pct "53.5"; chr2 rmsk exon 122923174 122923731 3752 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "-90"; chr2 rmsk exon 122923732 122924296 2749 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2467"; repStart "0"; chr2 rmsk exon 122924296 122924927 3894 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "745"; repStart "-1707"; chr2 rmsk exon 122925237 122925340 3894 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "744"; repFamily "ERV1"; repLeft "644"; repStart "-2344"; chr2 rmsk exon 122925320 122925482 642 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "-3707"; repFamily "ERV1"; repLeft "-4001"; repStart "-6795"; chr2 rmsk exon 122925484 122926160 3861 - . gene_id "HUERSP2_2q14.3"; transcript_id "HUERSP2_2q14.3"; locus "HUERSP2_2q14.3"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0023"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLE_2q14.3d ### chr2 rmsk gene 123096554 123097887 . + . gene_id "ERVLE_2q14.3d"; transcript_id "ERVLE_2q14.3d"; locus "ERVLE_2q14.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0523"; model_cov "847"; model_pct "14.9"; chr2 rmsk exon 123096554 123096739 308 + . gene_id "ERVLE_2q14.3d"; transcript_id "ERVLE_2q14.3d"; locus "ERVLE_2q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0523"; repClass "LTR"; repEnd "972"; repFamily "ERVL"; repLeft "-4695"; repStart "786"; chr2 rmsk exon 123097123 123097523 641 + . gene_id "ERVLE_2q14.3d"; transcript_id "ERVLE_2q14.3d"; locus "ERVLE_2q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0523"; repClass "LTR"; repEnd "1815"; repFamily "ERVL"; repLeft "-3852"; repStart "1415"; chr2 rmsk exon 123097641 123097887 587 + . gene_id "ERVLE_2q14.3d"; transcript_id "ERVLE_2q14.3d"; locus "ERVLE_2q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0523"; repClass "LTR"; repEnd "2241"; repFamily "ERVL"; repLeft "-3426"; repStart "1980"; ### ERVLE_2q14.3e ### chr2 rmsk gene 123165798 123166737 . + . gene_id "ERVLE_2q14.3e"; transcript_id "ERVLE_2q14.3e"; locus "ERVLE_2q14.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0524"; model_cov "717"; model_pct "12.7"; chr2 rmsk exon 123165798 123166289 566 + . gene_id "ERVLE_2q14.3e"; transcript_id "ERVLE_2q14.3e"; locus "ERVLE_2q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0524"; repClass "LTR"; repEnd "4493"; repFamily "ERVL"; repLeft "-1174"; repStart "3967"; chr2 rmsk exon 123166547 123166737 448 + . gene_id "ERVLE_2q14.3e"; transcript_id "ERVLE_2q14.3e"; locus "ERVLE_2q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0524"; repClass "LTR"; repEnd "5018"; repFamily "ERVL"; repLeft "-649"; repStart "4827"; ### ERVLE_2q14.3f ### chr2 rmsk gene 123275054 123276013 . + . gene_id "ERVLE_2q14.3f"; transcript_id "ERVLE_2q14.3f"; locus "ERVLE_2q14.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0525"; model_cov "1090"; model_pct "19.2"; chr2 rmsk exon 123275054 123276013 728 + . gene_id "ERVLE_2q14.3f"; transcript_id "ERVLE_2q14.3f"; locus "ERVLE_2q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0525"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "-3547"; repStart "1030"; ### MER4B_2q14.3 ### chr2 rmsk gene 123467446 123468835 . + . gene_id "MER4B_2q14.3"; transcript_id "MER4B_2q14.3"; locus "MER4B_2q14.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0060"; model_cov "981"; model_pct "14.5"; chr2 rmsk exon 123467446 123467507 5462 + . gene_id "MER4B_2q14.3"; transcript_id "MER4B_2q14.3"; locus "MER4B_2q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0060"; repClass "LTR"; repEnd "258"; repFamily "ERV1"; repLeft "-6500"; repStart "198"; chr2 rmsk exon 123467943 123468835 5462 + . gene_id "MER4B_2q14.3"; transcript_id "MER4B_2q14.3"; locus "MER4B_2q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0060"; repClass "LTR"; repEnd "1180"; repFamily "ERV1"; repLeft "-5578"; repStart "259"; ### MER4_2q14.3 ### chr2 rmsk gene 123468851 123474079 . + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0098"; model_cov "4402"; model_pct "66.7"; chr2 rmsk exon 123468851 123469163 3456 + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0098"; repClass "LTR"; repEnd "2890"; repFamily "ERV1"; repLeft "-3708"; repStart "2530"; chr2 rmsk exon 123469455 123469804 3456 + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0098"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "-3366"; repStart "2891"; chr2 rmsk exon 123470047 123470950 3868 + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0098"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2739"; chr2 rmsk exon 123470950 123473604 15984 + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0098"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chr2 rmsk exon 123473613 123474079 3338 + . gene_id "MER4_2q14.3"; transcript_id "MER4_2q14.3"; locus "MER4_2q14.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0098"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_2q14.3c ### chr2 rmsk gene 123492359 123493911 . - . gene_id "ERVLB4_2q14.3c"; transcript_id "ERVLB4_2q14.3c"; locus "ERVLB4_2q14.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0220"; model_cov "1007"; model_pct "17.6"; chr2 rmsk exon 123492359 123492393 447 - . gene_id "ERVLB4_2q14.3c"; transcript_id "ERVLB4_2q14.3c"; locus "ERVLB4_2q14.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0220"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "375"; repStart "-5"; chr2 rmsk exon 123492425 123492595 488 - . gene_id "ERVLB4_2q14.3c"; transcript_id "ERVLB4_2q14.3c"; locus "ERVLB4_2q14.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0220"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "231"; repStart "-40"; chr2 rmsk exon 123492617 123493059 4830 - . gene_id "ERVLB4_2q14.3c"; transcript_id "ERVLB4_2q14.3c"; locus "ERVLB4_2q14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0220"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5257"; repStart "0"; chr2 rmsk exon 123493356 123493911 4830 - . gene_id "ERVLB4_2q14.3c"; transcript_id "ERVLB4_2q14.3c"; locus "ERVLB4_2q14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0220"; repClass "LTR"; repEnd "5256"; repFamily "ERVL"; repLeft "4706"; repStart "-458"; ### ERVLB4_2q14.3d ### chr2 rmsk gene 123493934 123496304 . + . gene_id "ERVLB4_2q14.3d"; transcript_id "ERVLB4_2q14.3d"; locus "ERVLB4_2q14.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0221"; model_cov "1713"; model_pct "30.0"; chr2 rmsk exon 123493934 123493958 8504 + . gene_id "ERVLB4_2q14.3d"; transcript_id "ERVLB4_2q14.3d"; locus "ERVLB4_2q14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0221"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3689"; repStart "2001"; chr2 rmsk exon 123494320 123495814 8504 + . gene_id "ERVLB4_2q14.3d"; transcript_id "ERVLB4_2q14.3d"; locus "ERVLB4_2q14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0221"; repClass "LTR"; repEnd "3518"; repFamily "ERVL"; repLeft "-2196"; repStart "2026"; chr2 rmsk exon 123496116 123496304 8504 + . gene_id "ERVLB4_2q14.3d"; transcript_id "ERVLB4_2q14.3d"; locus "ERVLB4_2q14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0221"; repClass "LTR"; repEnd "3716"; repFamily "ERVL"; repLeft "-1998"; repStart "3519"; ### HERVL_2q14.3a ### chr2 rmsk gene 123496310 123500363 . - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0170"; model_cov "3079"; model_pct "54.5"; chr2 rmsk exon 123496310 123496747 3337 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 123496748 123497181 2753 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5227"; repStart "0"; chr2 rmsk exon 123497228 123499467 16916 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3003"; repStart "-428"; chr2 rmsk exon 123499464 123499916 3253 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "1"; repStart "-5224"; chr2 rmsk exon 123499917 123500000 359 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "368"; repStart "0"; chr2 rmsk exon 123500001 123500363 2736 - . gene_id "HERVL_2q14.3a"; transcript_id "HERVL_2q14.3a"; locus "HERVL_2q14.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0170"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "1"; repStart "-77"; ### ERVLB4_2q14.3e ### chr2 rmsk gene 123500365 123501363 . + . gene_id "ERVLB4_2q14.3e"; transcript_id "ERVLB4_2q14.3e"; locus "ERVLB4_2q14.3e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0222"; model_cov "1001"; model_pct "17.5"; chr2 rmsk exon 123500365 123501363 5060 + . gene_id "ERVLB4_2q14.3e"; transcript_id "ERVLB4_2q14.3e"; locus "ERVLB4_2q14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0222"; repClass "LTR"; repEnd "4719"; repFamily "ERVL"; repLeft "-995"; repStart "3718"; ### HERVH_2q14.3 ### chr2 rmsk gene 123659079 123661097 . - . gene_id "HERVH_2q14.3"; transcript_id "HERVH_2q14.3"; locus "HERVH_2q14.3"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0160"; model_cov "1717"; model_pct "22.3"; chr2 rmsk exon 123659079 123659299 975 - . gene_id "HERVH_2q14.3"; transcript_id "HERVH_2q14.3"; locus "HERVH_2q14.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0160"; repClass "LTR"; repEnd "298"; repFamily "ERV1"; repLeft "1"; repStart "-152"; chr2 rmsk exon 123659307 123659837 1814 - . gene_id "HERVH_2q14.3"; transcript_id "HERVH_2q14.3"; locus "HERVH_2q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0160"; repClass "LTR"; repEnd "4271"; repFamily "ERV1"; repLeft "3806"; repStart "-3442"; chr2 rmsk exon 123659832 123661097 7207 - . gene_id "HERVH_2q14.3"; transcript_id "HERVH_2q14.3"; locus "HERVH_2q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0160"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "2335"; repStart "-4126"; ### HERVS71_2q14.3a ### chr2 rmsk gene 123681643 123683589 . + . gene_id "HERVS71_2q14.3a"; transcript_id "HERVS71_2q14.3a"; locus "HERVS71_2q14.3a"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0003"; model_cov "1410"; model_pct "15.7"; chr2 rmsk exon 123681643 123682170 4070 + . gene_id "HERVS71_2q14.3a"; transcript_id "HERVS71_2q14.3a"; locus "HERVS71_2q14.3a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0003"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 123682171 123682613 6749 + . gene_id "HERVS71_2q14.3a"; transcript_id "HERVS71_2q14.3a"; locus "HERVS71_2q14.3a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0003"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "-8477"; repStart "1"; chr2 rmsk exon 123682712 123683589 6749 + . gene_id "HERVS71_2q14.3a"; transcript_id "HERVS71_2q14.3a"; locus "HERVS71_2q14.3a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0003"; repClass "LTR"; repEnd "1412"; repFamily "ERV1"; repLeft "-7566"; repStart "502"; ### HERVS71_2q14.3b ### chr2 rmsk gene 123686372 123691521 . + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0004"; model_cov "4698"; model_pct "52.3"; chr2 rmsk exon 123686372 123688185 13602 + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0004"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-5742"; repStart "1410"; chr2 rmsk exon 123688168 123689002 5694 + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0004"; repClass "LTR"; repEnd "5665"; repFamily "ERV1"; repLeft "-3313"; repStart "4803"; chr2 rmsk exon 123689000 123690684 12626 + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0004"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "6091"; chr2 rmsk exon 123690682 123690996 2349 + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0004"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr2 rmsk exon 123690997 123691521 4034 + . gene_id "HERVS71_2q14.3b"; transcript_id "HERVS71_2q14.3b"; locus "HERVS71_2q14.3b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0004"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q14.3g ### chr2 rmsk gene 123772626 123774535 . + . gene_id "ERVLE_2q14.3g"; transcript_id "ERVLE_2q14.3g"; locus "ERVLE_2q14.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0526"; model_cov "1823"; model_pct "32.2"; chr2 rmsk exon 123772626 123774199 2176 + . gene_id "ERVLE_2q14.3g"; transcript_id "ERVLE_2q14.3g"; locus "ERVLE_2q14.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0526"; repClass "LTR"; repEnd "1822"; repFamily "ERVL"; repLeft "-3845"; repStart "129"; chr2 rmsk exon 123774398 123774535 351 + . gene_id "ERVLE_2q14.3g"; transcript_id "ERVLE_2q14.3g"; locus "ERVLE_2q14.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0526"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "-3546"; repStart "1991"; ### MER101_2q14.3 ### chr2 rmsk gene 124829718 124832460 . - . gene_id "MER101_2q14.3"; transcript_id "MER101_2q14.3"; locus "MER101_2q14.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0064"; model_cov "3137"; model_pct "47.3"; chr2 rmsk exon 124829718 124832460 5496 - . gene_id "MER101_2q14.3"; transcript_id "MER101_2q14.3"; locus "MER101_2q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0064"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "790"; repStart "-2712"; ### LTR57_2q14.3 ### chr2 rmsk gene 124831685 124832890 . - . gene_id "LTR57_2q14.3"; transcript_id "LTR57_2q14.3"; locus "LTR57_2q14.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0026"; model_cov "1184"; model_pct "22.2"; chr2 rmsk exon 124831685 124832890 4412 - . gene_id "LTR57_2q14.3"; transcript_id "LTR57_2q14.3"; locus "LTR57_2q14.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0026"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "412"; repStart "-3747"; ### MER41_2q14.3b ### chr2 rmsk gene 124983847 124994596 . + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; category "unknown"; intModel "MER41-int"; locid "MER41-int_0058"; model_cov "6119"; model_pct "100.0"; chr2 rmsk exon 124983847 124984403 3681 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0058"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "73"; chr2 rmsk exon 124984404 124984593 11204 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "190"; repFamily "ERV1"; repLeft "-5756"; repStart "1"; chr2 rmsk exon 124984890 124986591 11204 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "1745"; repFamily "ERV1"; repLeft "-4201"; repStart "-126"; chr2 rmsk exon 124987949 124988590 7416 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "-3617"; repStart "1659"; chr2 rmsk exon 124988896 124989217 5576 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "2958"; repFamily "ERV1"; repLeft "-2988"; repStart "2597"; chr2 rmsk exon 124989926 124990248 1080 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0058"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-150"; repStart "1"; chr2 rmsk exon 124990262 124990291 1008 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "3130"; repFamily "ERV1"; repLeft "-2816"; repStart "3102"; chr2 rmsk exon 124990586 124991050 18658 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "3403"; repFamily "ERV1"; repLeft "-2543"; repStart "2945"; chr2 rmsk exon 124991429 124993960 18658 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0058"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "3404"; chr2 rmsk exon 124993962 124994596 4002 + . gene_id "MER41_2q14.3b"; transcript_id "MER41_2q14.3b"; locus "MER41_2q14.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0058"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERVLB4_2q14.3f ### chr2 rmsk gene 125010718 125012997 . + . gene_id "ERVLB4_2q14.3f"; transcript_id "ERVLB4_2q14.3f"; locus "ERVLB4_2q14.3f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0223"; model_cov "1739"; model_pct "30.4"; chr2 rmsk exon 125010718 125010945 321 + . gene_id "ERVLB4_2q14.3f"; transcript_id "ERVLB4_2q14.3f"; locus "ERVLB4_2q14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0223"; repClass "LTR"; repEnd "2061"; repFamily "ERVL"; repLeft "-3653"; repStart "1839"; chr2 rmsk exon 125011162 125012094 1575 + . gene_id "ERVLB4_2q14.3f"; transcript_id "ERVLB4_2q14.3f"; locus "ERVLB4_2q14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0223"; repClass "LTR"; repEnd "2684"; repFamily "ERVL"; repLeft "-3030"; repStart "1741"; chr2 rmsk exon 125012440 125012997 1575 + . gene_id "ERVLB4_2q14.3f"; transcript_id "ERVLB4_2q14.3f"; locus "ERVLB4_2q14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0223"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "-2455"; repStart "2685"; ### MER61_2q14.3 ### chr2 rmsk gene 125185661 125188060 . - . gene_id "MER61_2q14.3"; transcript_id "MER61_2q14.3"; locus "MER61_2q14.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0055"; model_cov "1739"; model_pct "33.3"; chr2 rmsk exon 125185661 125185999 1762 - . gene_id "MER61_2q14.3"; transcript_id "MER61_2q14.3"; locus "MER61_2q14.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0055"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 125186000 125187614 10380 - . gene_id "MER61_2q14.3"; transcript_id "MER61_2q14.3"; locus "MER61_2q14.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0055"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3594"; repStart "0"; chr2 rmsk exon 125187615 125187723 490 - . gene_id "MER61_2q14.3"; transcript_id "MER61_2q14.3"; locus "MER61_2q14.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0055"; repClass "LTR"; repEnd "117"; repFamily "ERV1"; repLeft "1"; repStart "-5100"; chr2 rmsk exon 125187724 125188060 1689 - . gene_id "MER61_2q14.3"; transcript_id "MER61_2q14.3"; locus "MER61_2q14.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0055"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVP71A_2q14.3 ### chr2 rmsk gene 125257165 125262376 . - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0013"; model_cov "3030"; model_pct "39.9"; chr2 rmsk exon 125257165 125258284 5915 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "7587"; repFamily "ERV1"; repLeft "6499"; repStart "-3"; chr2 rmsk exon 125258283 125258587 1926 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "3855"; repFamily "ERV1"; repLeft "3550"; repStart "-3735"; chr2 rmsk exon 125259741 125260212 7950 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "1746"; repFamily "ERV1"; repLeft "1282"; repStart "-5844"; chr2 rmsk exon 125260585 125261492 7950 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "1281"; repFamily "ERV1"; repLeft "383"; repStart "-6309"; chr2 rmsk exon 125261490 125261766 1715 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "277"; repFamily "ERV1"; repLeft "2"; repStart "-7313"; chr2 rmsk exon 125261767 125262376 4475 - . gene_id "HERVP71A_2q14.3"; transcript_id "HERVP71A_2q14.3"; locus "HERVP71A_2q14.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0013"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_2q14.3c ### chr2 rmsk gene 125419891 125421132 . + . gene_id "ERV316A3_2q14.3c"; transcript_id "ERV316A3_2q14.3c"; locus "ERV316A3_2q14.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0301"; model_cov "1421"; model_pct "27.2"; chr2 rmsk exon 125419891 125420055 2903 + . gene_id "ERV316A3_2q14.3c"; transcript_id "ERV316A3_2q14.3c"; locus "ERV316A3_2q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0301"; repClass "LTR"; repEnd "3595"; repFamily "ERVL"; repLeft "-1631"; repStart "3398"; chr2 rmsk exon 125420120 125421132 2903 + . gene_id "ERV316A3_2q14.3c"; transcript_id "ERV316A3_2q14.3c"; locus "ERV316A3_2q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0301"; repClass "LTR"; repEnd "4820"; repFamily "ERVL"; repLeft "-406"; repStart "3596"; ### ERVLB4_2q14.3g ### chr2 rmsk gene 125466763 125467894 . - . gene_id "ERVLB4_2q14.3g"; transcript_id "ERVLB4_2q14.3g"; locus "ERVLB4_2q14.3g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0224"; model_cov "1186"; model_pct "20.8"; chr2 rmsk exon 125466763 125467894 4559 - . gene_id "ERVLB4_2q14.3g"; transcript_id "ERVLB4_2q14.3g"; locus "ERVLB4_2q14.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0224"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "2628"; repStart "-1900"; ### HERVL_2q14.3b ### chr2 rmsk gene 125658411 125661002 . + . gene_id "HERVL_2q14.3b"; transcript_id "HERVL_2q14.3b"; locus "HERVL_2q14.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0171"; model_cov "1947"; model_pct "34.4"; chr2 rmsk exon 125658411 125659917 13487 + . gene_id "HERVL_2q14.3b"; transcript_id "HERVL_2q14.3b"; locus "HERVL_2q14.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0171"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-436"; repStart "3706"; chr2 rmsk exon 125659959 125660437 13487 + . gene_id "HERVL_2q14.3b"; transcript_id "HERVL_2q14.3b"; locus "HERVL_2q14.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0171"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5219"; chr2 rmsk exon 125660438 125661002 2109 + . gene_id "HERVL_2q14.3b"; transcript_id "HERVL_2q14.3b"; locus "HERVL_2q14.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0171"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-16"; repStart "-100"; ### HERVL_2q14.3c ### chr2 rmsk gene 125884984 125891050 . - . gene_id "HERVL_2q14.3c"; transcript_id "HERVL_2q14.3c"; locus "HERVL_2q14.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0172"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 125884984 125885404 2904 - . gene_id "HERVL_2q14.3c"; transcript_id "HERVL_2q14.3c"; locus "HERVL_2q14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0172"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 125885405 125890976 30041 - . gene_id "HERVL_2q14.3c"; transcript_id "HERVL_2q14.3c"; locus "HERVL_2q14.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0172"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 125890977 125891050 355 - . gene_id "HERVL_2q14.3c"; transcript_id "HERVL_2q14.3c"; locus "HERVL_2q14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0172"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "368"; repStart "0"; ### ERVLE_2q14.3h ### chr2 rmsk gene 126051100 126053009 . + . gene_id "ERVLE_2q14.3h"; transcript_id "ERVLE_2q14.3h"; locus "ERVLE_2q14.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0527"; model_cov "595"; model_pct "10.5"; chr2 rmsk exon 126051100 126051546 488 + . gene_id "ERVLE_2q14.3h"; transcript_id "ERVLE_2q14.3h"; locus "ERVLE_2q14.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0527"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "-4181"; repStart "1041"; chr2 rmsk exon 126052866 126053009 308 + . gene_id "ERVLE_2q14.3h"; transcript_id "ERVLE_2q14.3h"; locus "ERVLE_2q14.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0527"; repClass "LTR"; repEnd "2005"; repFamily "ERVL"; repLeft "-3662"; repStart "1855"; ### HERVL_2q14.3d ### chr2 rmsk gene 126070820 126080209 . + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0175"; model_cov "5649"; model_pct "99.9"; chr2 rmsk exon 126070820 126071339 1631 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-113"; chr2 rmsk exon 126071406 126071486 360 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "376"; chr2 rmsk exon 126071487 126075349 38995 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "3911"; repFamily "ERVL"; repLeft "-1743"; repStart "1"; chr2 rmsk exon 126075742 126075808 38995 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "3976"; repFamily "ERVL"; repLeft "-1678"; repStart "3912"; chr2 rmsk exon 126077992 126079666 38995 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "3977"; chr2 rmsk exon 126079670 126080209 1736 + . gene_id "HERVL_2q14.3d"; transcript_id "HERVL_2q14.3d"; locus "HERVL_2q14.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0175"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-97"; ### HERVL_2q14.3e ### chr2 rmsk gene 126095650 126098350 . + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0176"; model_cov "1791"; model_pct "31.7"; chr2 rmsk exon 126095650 126096039 2872 + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0176"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr2 rmsk exon 126096088 126096153 2872 + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0176"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "387"; chr2 rmsk exon 126096157 126096891 5537 + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0176"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "-4872"; repStart "54"; chr2 rmsk exon 126096879 126097925 7279 + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0176"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4591"; chr2 rmsk exon 126097926 126098350 2794 + . gene_id "HERVL_2q14.3e"; transcript_id "HERVL_2q14.3e"; locus "HERVL_2q14.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0176"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### HERVL18_2q14.3a ### chr2 rmsk gene 126371248 126373480 . - . gene_id "HERVL18_2q14.3a"; transcript_id "HERVL18_2q14.3a"; locus "HERVL18_2q14.3a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0022"; model_cov "1562"; model_pct "25.8"; chr2 rmsk exon 126371248 126371787 2390 - . gene_id "HERVL18_2q14.3a"; transcript_id "HERVL18_2q14.3a"; locus "HERVL18_2q14.3a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0022"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 126371942 126373077 6985 - . gene_id "HERVL18_2q14.3a"; transcript_id "HERVL18_2q14.3a"; locus "HERVL18_2q14.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0022"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4880"; repStart "0"; chr2 rmsk exon 126373071 126373480 2506 - . gene_id "HERVL18_2q14.3a"; transcript_id "HERVL18_2q14.3a"; locus "HERVL18_2q14.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0022"; repClass "LTR"; repEnd "1213"; repFamily "ERVL"; repLeft "818"; repStart "-4834"; ### ERVLB4_2q14.3h ### chr2 rmsk gene 126522088 126528169 . - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0225"; model_cov "1721"; model_pct "30.1"; chr2 rmsk exon 126522088 126522560 1654 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "1"; repStart "-23"; chr2 rmsk exon 126522567 126522874 1700 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "5692"; repFamily "ERVL"; repLeft "5398"; repStart "-22"; chr2 rmsk exon 126523460 126523567 1700 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "5290"; repStart "-317"; chr2 rmsk exon 126524129 126524224 4534 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "5204"; repStart "-417"; chr2 rmsk exon 126524587 126525334 4534 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "4441"; repStart "-511"; chr2 rmsk exon 126525340 126525422 540 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "4288"; repFamily "ERVL"; repLeft "4204"; repStart "-1426"; chr2 rmsk exon 126525422 126525552 2103 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "4443"; repFamily "ERVL"; repLeft "4318"; repStart "-1271"; chr2 rmsk exon 126527911 126528169 2103 - . gene_id "ERVLB4_2q14.3h"; transcript_id "ERVLB4_2q14.3h"; locus "ERVLB4_2q14.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0225"; repClass "LTR"; repEnd "4317"; repFamily "ERVL"; repLeft "4061"; repStart "-1397"; ### HERVL_2q14.3f ### chr2 rmsk gene 126645902 126652426 . - . gene_id "HERVL_2q14.3f"; transcript_id "HERVL_2q14.3f"; locus "HERVL_2q14.3f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0177"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 126645902 126645970 2715 - . gene_id "HERVL_2q14.3f"; transcript_id "HERVL_2q14.3f"; locus "HERVL_2q14.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0177"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "384"; repStart "-2"; chr2 rmsk exon 126646010 126646415 2715 - . gene_id "HERVL_2q14.3f"; transcript_id "HERVL_2q14.3f"; locus "HERVL_2q14.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0177"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "1"; repStart "-61"; chr2 rmsk exon 126646416 126651983 44431 - . gene_id "HERVL_2q14.3f"; transcript_id "HERVL_2q14.3f"; locus "HERVL_2q14.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0177"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 126651984 126652426 3198 - . gene_id "HERVL_2q14.3f"; transcript_id "HERVL_2q14.3f"; locus "HERVL_2q14.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0177"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_2q14.3i ### chr2 rmsk gene 126759393 126761238 . + . gene_id "ERVLB4_2q14.3i"; transcript_id "ERVLB4_2q14.3i"; locus "ERVLB4_2q14.3i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0226"; model_cov "1933"; model_pct "33.8"; chr2 rmsk exon 126759393 126761238 9630 + . gene_id "ERVLB4_2q14.3i"; transcript_id "ERVLB4_2q14.3i"; locus "ERVLB4_2q14.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0226"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "-2254"; repStart "1527"; ### HML5_2q14.3 ### chr2 rmsk gene 127369875 127375395 . + . gene_id "HML5_2q14.3"; transcript_id "HML5_2q14.3"; locus "HML5_2q14.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0018"; model_cov "5077"; model_pct "74.3"; chr2 rmsk exon 127369875 127370370 3126 + . gene_id "HML5_2q14.3"; transcript_id "HML5_2q14.3"; locus "HML5_2q14.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0018"; repClass "LTR"; repEnd "500"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr2 rmsk exon 127370373 127375395 36645 + . gene_id "HML5_2q14.3"; transcript_id "HML5_2q14.3"; locus "HML5_2q14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0018"; repClass "LTR"; repEnd "5078"; repFamily "ERVK"; repLeft "-1759"; repStart "1"; ### HML6_2q14.3 ### chr2 rmsk gene 127615267 127618672 . - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0008"; model_cov "1647"; model_pct "22.9"; chr2 rmsk exon 127615267 127615770 3722 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "498"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr2 rmsk exon 127615792 127615845 400 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "7120"; repFamily "ERVK"; repLeft "7067"; repStart "-82"; chr2 rmsk exon 127615846 127616263 2176 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "6691"; repFamily "ERVK"; repLeft "6284"; repStart "-511"; chr2 rmsk exon 127616264 127617215 4798 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "2262"; repFamily "ERVK"; repLeft "1284"; repStart "-4940"; chr2 rmsk exon 127617371 127617487 460 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "226"; repFamily "ERVK"; repLeft "89"; repStart "-6976"; chr2 rmsk exon 127617802 127617912 460 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "88"; repFamily "ERVK"; repLeft "16"; repStart "-7114"; chr2 rmsk exon 127618168 127618672 3717 - . gene_id "HML6_2q14.3"; transcript_id "HML6_2q14.3"; locus "HML6_2q14.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0008"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_2q14.3 ### chr2 rmsk gene 127818051 127825835 . + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0026"; model_cov "4660"; model_pct "52.2"; chr2 rmsk exon 127818051 127818714 3843 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 127818736 127819742 6142 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "2599"; repFamily "ERV1"; repLeft "-6320"; repStart "1524"; chr2 rmsk exon 127820039 127822528 13130 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "3701"; repFamily "ERV1"; repLeft "-5218"; repStart "1099"; chr2 rmsk exon 127822523 127823289 5665 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "5631"; repFamily "ERV1"; repLeft "-3288"; repStart "4863"; chr2 rmsk exon 127825109 127825357 1484 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "-3"; repStart "8701"; chr2 rmsk exon 127825361 127825835 3729 + . gene_id "HUERSP3_2q14.3"; transcript_id "HUERSP3_2q14.3"; locus "HUERSP3_2q14.3"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0026"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "-165"; repStart "1"; ### HERVL18_2q14.3b ### chr2 rmsk gene 127830883 127833378 . + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0024"; model_cov "2418"; model_pct "40.0"; chr2 rmsk exon 127830883 127831225 2315 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 127831240 127831700 1990 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "541"; repFamily "ERVL"; repLeft "-5506"; repStart "9"; chr2 rmsk exon 127831694 127832231 1675 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1148"; chr2 rmsk exon 127832231 127832487 1250 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr2 rmsk exon 127832485 127833345 5842 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2718"; chr2 rmsk exon 127833348 127833378 251 + . gene_id "HERVL18_2q14.3b"; transcript_id "HERVL18_2q14.3b"; locus "HERVL18_2q14.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0024"; repClass "LTR"; repEnd "4424"; repFamily "ERVL"; repLeft "-1623"; repStart "4394"; ### HERVI_2q14.3 ### chr2 rmsk gene 128036818 128040545 . + . gene_id "HERVI_2q14.3"; transcript_id "HERVI_2q14.3"; locus "HERVI_2q14.3"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0003"; model_cov "3231"; model_pct "41.5"; chr2 rmsk exon 128036818 128037258 1860 + . gene_id "HERVI_2q14.3"; transcript_id "HERVI_2q14.3"; locus "HERVI_2q14.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0003"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr2 rmsk exon 128037259 128040545 9215 + . gene_id "HERVI_2q14.3"; transcript_id "HERVI_2q14.3"; locus "HERVI_2q14.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0003"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "-4553"; repStart "1"; ### HERVIP10F_2q14.3 ### chr2 rmsk gene 128040542 128043325 . + . gene_id "HERVIP10F_2q14.3"; transcript_id "HERVIP10F_2q14.3"; locus "HERVIP10F_2q14.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0018"; model_cov "2344"; model_pct "30.3"; chr2 rmsk exon 128040542 128042869 10671 + . gene_id "HERVIP10F_2q14.3"; transcript_id "HERVIP10F_2q14.3"; locus "HERVIP10F_2q14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0018"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "5393"; chr2 rmsk exon 128042870 128043325 1755 + . gene_id "HERVIP10F_2q14.3"; transcript_id "HERVIP10F_2q14.3"; locus "HERVIP10F_2q14.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0018"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERVLE_2q14.3i ### chr2 rmsk gene 128067912 128073631 . + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0529"; model_cov "2531"; model_pct "44.7"; chr2 rmsk exon 128067912 128068064 779 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "-4060"; repStart "1457"; chr2 rmsk exon 128068364 128068409 779 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "1636"; repFamily "ERVL"; repLeft "-4031"; repStart "1608"; chr2 rmsk exon 128068684 128068977 779 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "1915"; repFamily "ERVL"; repLeft "-3752"; repStart "1637"; chr2 rmsk exon 128070040 128070420 2446 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-3264"; repStart "1819"; chr2 rmsk exon 128070712 128070724 2446 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "2414"; repFamily "ERVL"; repLeft "-3253"; repStart "2404"; chr2 rmsk exon 128071025 128071192 2446 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "2636"; repFamily "ERVL"; repLeft "-3031"; repStart "2415"; chr2 rmsk exon 128071245 128071262 2446 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "-3005"; repStart "2637"; chr2 rmsk exon 128071578 128072493 2735 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2061"; repStart "2611"; chr2 rmsk exon 128073379 128073631 376 + . gene_id "ERVLE_2q14.3i"; transcript_id "ERVLE_2q14.3i"; locus "ERVLE_2q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0529"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "-23"; repStart "5404"; ### ERV316A3_2q14.3d ### chr2 rmsk gene 128079979 128081205 . + . gene_id "ERV316A3_2q14.3d"; transcript_id "ERV316A3_2q14.3d"; locus "ERV316A3_2q14.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0302"; model_cov "538"; model_pct "10.3"; chr2 rmsk exon 128079979 128080247 881 + . gene_id "ERV316A3_2q14.3d"; transcript_id "ERV316A3_2q14.3d"; locus "ERV316A3_2q14.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0302"; repClass "LTR"; repEnd "280"; repFamily "ERVL"; repLeft "-158"; repStart "1"; chr2 rmsk exon 128080265 128080793 1535 + . gene_id "ERV316A3_2q14.3d"; transcript_id "ERV316A3_2q14.3d"; locus "ERV316A3_2q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0302"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "4684"; chr2 rmsk exon 128080798 128081205 1190 + . gene_id "ERV316A3_2q14.3d"; transcript_id "ERV316A3_2q14.3d"; locus "ERV316A3_2q14.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0302"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "3"; ### ERVLB4_2q21.1a ### chr2 rmsk gene 129398200 129404464 . + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0227"; model_cov "4811"; model_pct "84.2"; chr2 rmsk exon 129398200 129400434 20520 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "2829"; repFamily "ERVL"; repLeft "-2885"; repStart "565"; chr2 rmsk exon 129400709 129402032 20520 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "-1554"; repStart "2830"; chr2 rmsk exon 129402121 129402612 5698 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "5017"; repFamily "ERVL"; repLeft "-697"; repStart "4481"; chr2 rmsk exon 129402670 129402928 5698 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "5301"; repFamily "ERVL"; repLeft "-413"; repStart "5018"; chr2 rmsk exon 129403269 129403415 5698 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-319"; repStart "5302"; chr2 rmsk exon 129403718 129404013 5698 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "5701"; repFamily "ERVL"; repLeft "-13"; repStart "5396"; chr2 rmsk exon 129404019 129404402 1513 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-89"; repStart "3"; chr2 rmsk exon 129404428 129404464 241 + . gene_id "ERVLB4_2q21.1a"; transcript_id "ERVLB4_2q21.1a"; locus "ERVLB4_2q21.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0227"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "520"; ### ERVLB4_2q21.1b ### chr2 rmsk gene 129507634 129511188 . + . gene_id "ERVLB4_2q21.1b"; transcript_id "ERVLB4_2q21.1b"; locus "ERVLB4_2q21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0228"; model_cov "3374"; model_pct "59.0"; chr2 rmsk exon 129507634 129508193 10435 + . gene_id "ERVLB4_2q21.1b"; transcript_id "ERVLB4_2q21.1b"; locus "ERVLB4_2q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0228"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "-5102"; repStart "30"; chr2 rmsk exon 129508239 129509888 10435 + . gene_id "ERVLB4_2q21.1b"; transcript_id "ERVLB4_2q21.1b"; locus "ERVLB4_2q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0228"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "-3380"; repStart "613"; chr2 rmsk exon 129510177 129510567 2361 + . gene_id "ERVLB4_2q21.1b"; transcript_id "ERVLB4_2q21.1b"; locus "ERVLB4_2q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0228"; repClass "LTR"; repEnd "2778"; repFamily "ERVL"; repLeft "-2936"; repStart "2387"; chr2 rmsk exon 129510617 129511188 2520 + . gene_id "ERVLB4_2q21.1b"; transcript_id "ERVLB4_2q21.1b"; locus "ERVLB4_2q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0228"; repClass "LTR"; repEnd "5550"; repFamily "ERVL"; repLeft "-164"; repStart "4870"; ### HML2_2q21.1 ### chr2 rmsk gene 129961965 129965044 . - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0016"; model_cov "2023"; model_pct "26.8"; chr2 rmsk exon 129961965 129962925 8380 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 129963021 129964636 14541 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr2 rmsk exon 129964636 129965044 3589 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5126"; repStart "-2002"; ### MER101_2q21.1a ### chr2 rmsk gene 130022468 130023342 . + . gene_id "MER101_2q21.1a"; transcript_id "MER101_2q21.1a"; locus "MER101_2q21.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0065"; model_cov "824"; model_pct "12.4"; chr2 rmsk exon 130022468 130022768 2389 + . gene_id "MER101_2q21.1a"; transcript_id "MER101_2q21.1a"; locus "MER101_2q21.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0065"; repClass "LTR"; repEnd "3049"; repFamily "ERV1"; repLeft "-3590"; repStart "2753"; chr2 rmsk exon 130022802 130023342 2389 + . gene_id "MER101_2q21.1a"; transcript_id "MER101_2q21.1a"; locus "MER101_2q21.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0065"; repClass "LTR"; repEnd "3578"; repFamily "ERV1"; repLeft "-3061"; repStart "3050"; ### MER4_2q21.1a ### chr2 rmsk gene 130070150 130070791 . - . gene_id "MER4_2q21.1a"; transcript_id "MER4_2q21.1a"; locus "MER4_2q21.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0100"; model_cov "716"; model_pct "10.9"; chr2 rmsk exon 130070150 130070240 479 - . gene_id "MER4_2q21.1a"; transcript_id "MER4_2q21.1a"; locus "MER4_2q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0100"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-723"; repStart "-7231"; chr2 rmsk exon 130070245 130070791 2413 - . gene_id "MER4_2q21.1a"; transcript_id "MER4_2q21.1a"; locus "MER4_2q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0100"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "29"; repStart "-5943"; ### MER101_2q21.1b ### chr2 rmsk gene 130413190 130414090 . + . gene_id "MER101_2q21.1b"; transcript_id "MER101_2q21.1b"; locus "MER101_2q21.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0066"; model_cov "818"; model_pct "12.3"; chr2 rmsk exon 130413190 130413499 2346 + . gene_id "MER101_2q21.1b"; transcript_id "MER101_2q21.1b"; locus "MER101_2q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0066"; repClass "LTR"; repEnd "3049"; repFamily "ERV1"; repLeft "-3590"; repStart "2759"; chr2 rmsk exon 130413551 130414090 2346 + . gene_id "MER101_2q21.1b"; transcript_id "MER101_2q21.1b"; locus "MER101_2q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0066"; repClass "LTR"; repEnd "3578"; repFamily "ERV1"; repLeft "-3061"; repStart "3050"; ### MER4_2q21.1b ### chr2 rmsk gene 130458722 130459363 . - . gene_id "MER4_2q21.1b"; transcript_id "MER4_2q21.1b"; locus "MER4_2q21.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0101"; model_cov "716"; model_pct "10.9"; chr2 rmsk exon 130458722 130458812 465 - . gene_id "MER4_2q21.1b"; transcript_id "MER4_2q21.1b"; locus "MER4_2q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0101"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-723"; repStart "-7231"; chr2 rmsk exon 130458817 130459363 2061 - . gene_id "MER4_2q21.1b"; transcript_id "MER4_2q21.1b"; locus "MER4_2q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0101"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "29"; repStart "-5943"; ### MER4_2q21.1c ### chr2 rmsk gene 130661330 130661970 . + . gene_id "MER4_2q21.1c"; transcript_id "MER4_2q21.1c"; locus "MER4_2q21.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0102"; model_cov "713"; model_pct "10.8"; chr2 rmsk exon 130661330 130661874 1876 + . gene_id "MER4_2q21.1c"; transcript_id "MER4_2q21.1c"; locus "MER4_2q21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0102"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "-5946"; repStart "29"; chr2 rmsk exon 130661881 130661970 402 + . gene_id "MER4_2q21.1c"; transcript_id "MER4_2q21.1c"; locus "MER4_2q21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0102"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-723"; ### MER101_2q21.1c ### chr2 rmsk gene 130707408 130708291 . - . gene_id "MER101_2q21.1c"; transcript_id "MER101_2q21.1c"; locus "MER101_2q21.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0067"; model_cov "818"; model_pct "12.3"; chr2 rmsk exon 130707408 130707947 2326 - . gene_id "MER101_2q21.1c"; transcript_id "MER101_2q21.1c"; locus "MER101_2q21.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0067"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "3051"; repStart "-3060"; chr2 rmsk exon 130707985 130708291 2326 - . gene_id "MER101_2q21.1c"; transcript_id "MER101_2q21.1c"; locus "MER101_2q21.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0067"; repClass "LTR"; repEnd "3050"; repFamily "ERV1"; repLeft "2760"; repStart "-3589"; ### ERVLB4_2q21.1c ### chr2 rmsk gene 130799480 130803676 . + . gene_id "ERVLB4_2q21.1c"; transcript_id "ERVLB4_2q21.1c"; locus "ERVLB4_2q21.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0230"; model_cov "3231"; model_pct "56.5"; chr2 rmsk exon 130799480 130800693 9345 + . gene_id "ERVLB4_2q21.1c"; transcript_id "ERVLB4_2q21.1c"; locus "ERVLB4_2q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0230"; repClass "LTR"; repEnd "1635"; repFamily "ERVL"; repLeft "-4079"; repStart "409"; chr2 rmsk exon 130801141 130801583 9802 + . gene_id "ERVLB4_2q21.1c"; transcript_id "ERVLB4_2q21.1c"; locus "ERVLB4_2q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0230"; repClass "LTR"; repEnd "2139"; repFamily "ERVL"; repLeft "-3575"; repStart "1581"; chr2 rmsk exon 130802237 130803676 9802 + . gene_id "ERVLB4_2q21.1c"; transcript_id "ERVLB4_2q21.1c"; locus "ERVLB4_2q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0230"; repClass "LTR"; repEnd "3587"; repFamily "ERVL"; repLeft "-2127"; repStart "2140"; ### ERVL_2q21.1 ### chr2 rmsk gene 130839480 130840847 . - . gene_id "ERVL_2q21.1"; transcript_id "ERVL_2q21.1"; locus "ERVL_2q21.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0046"; model_cov "1172"; model_pct "20.4"; chr2 rmsk exon 130839480 130840011 560 - . gene_id "ERVL_2q21.1"; transcript_id "ERVL_2q21.1"; locus "ERVL_2q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0046"; repClass "LTR"; repEnd "3251"; repFamily "ERVL"; repLeft "2632"; repStart "-2506"; chr2 rmsk exon 130840252 130840426 317 - . gene_id "ERVL_2q21.1"; transcript_id "ERVL_2q21.1"; locus "ERVL_2q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0046"; repClass "LTR"; repEnd "2568"; repFamily "ERVL"; repLeft "2390"; repStart "-3189"; chr2 rmsk exon 130840467 130840847 730 - . gene_id "ERVL_2q21.1"; transcript_id "ERVL_2q21.1"; locus "ERVL_2q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0046"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "1953"; repStart "-3429"; ### MER41_2q21.1a ### chr2 rmsk gene 131213999 131214956 . + . gene_id "MER41_2q21.1a"; transcript_id "MER41_2q21.1a"; locus "MER41_2q21.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0060"; model_cov "716"; model_pct "12.0"; chr2 rmsk exon 131213999 131214279 1627 + . gene_id "MER41_2q21.1a"; transcript_id "MER41_2q21.1a"; locus "MER41_2q21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0060"; repClass "LTR"; repEnd "1859"; repFamily "ERV1"; repLeft "-4087"; repStart "1567"; chr2 rmsk exon 131214495 131214956 2123 + . gene_id "MER41_2q21.1a"; transcript_id "MER41_2q21.1a"; locus "MER41_2q21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0060"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "-2725"; repStart "2797"; ### MER4_2q21.1d ### chr2 rmsk gene 131268134 131268775 . + . gene_id "MER4_2q21.1d"; transcript_id "MER4_2q21.1d"; locus "MER4_2q21.1d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0103"; model_cov "716"; model_pct "10.9"; chr2 rmsk exon 131268134 131268680 2014 + . gene_id "MER4_2q21.1d"; transcript_id "MER4_2q21.1d"; locus "MER4_2q21.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0103"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-5943"; repStart "29"; chr2 rmsk exon 131268685 131268775 478 + . gene_id "MER4_2q21.1d"; transcript_id "MER4_2q21.1d"; locus "MER4_2q21.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0103"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-723"; ### MER101_2q21.1d ### chr2 rmsk gene 131314037 131314911 . - . gene_id "MER101_2q21.1d"; transcript_id "MER101_2q21.1d"; locus "MER101_2q21.1d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0068"; model_cov "825"; model_pct "12.4"; chr2 rmsk exon 131314037 131314572 2377 - . gene_id "MER101_2q21.1d"; transcript_id "MER101_2q21.1d"; locus "MER101_2q21.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0068"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "3057"; repStart "-3060"; chr2 rmsk exon 131314607 131314911 2377 - . gene_id "MER101_2q21.1d"; transcript_id "MER101_2q21.1d"; locus "MER101_2q21.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0068"; repClass "LTR"; repEnd "3056"; repFamily "ERV1"; repLeft "2753"; repStart "-3583"; ### MER101_2q21.1e ### chr2 rmsk gene 131403438 131404214 . + . gene_id "MER101_2q21.1e"; transcript_id "MER101_2q21.1e"; locus "MER101_2q21.1e"; category "internal"; intModel "MER101-int"; locid "MER101-int_0069"; model_cov "1474"; model_pct "22.2"; chr2 rmsk exon 131403438 131404214 1759 + . gene_id "MER101_2q21.1e"; transcript_id "MER101_2q21.1e"; locus "MER101_2q21.1e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0069"; repClass "LTR"; repEnd "4196"; repFamily "ERV1"; repLeft "-2443"; repStart "2722"; ### MER41_2q21.1b ### chr2 rmsk gene 131548084 131549045 . + . gene_id "MER41_2q21.1b"; transcript_id "MER41_2q21.1b"; locus "MER41_2q21.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0061"; model_cov "949"; model_pct "16.0"; chr2 rmsk exon 131548084 131548354 1427 + . gene_id "MER41_2q21.1b"; transcript_id "MER41_2q21.1b"; locus "MER41_2q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0061"; repClass "LTR"; repEnd "1859"; repFamily "ERV1"; repLeft "-4087"; repStart "1572"; chr2 rmsk exon 131548347 131548590 798 + . gene_id "MER41_2q21.1b"; transcript_id "MER41_2q21.1b"; locus "MER41_2q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0061"; repClass "LTR"; repEnd "-124"; repFamily "ERV1"; repLeft "-6070"; repStart "-339"; chr2 rmsk exon 131548611 131549045 2086 + . gene_id "MER41_2q21.1b"; transcript_id "MER41_2q21.1b"; locus "MER41_2q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0061"; repClass "LTR"; repEnd "3229"; repFamily "ERV1"; repLeft "-2717"; repStart "2782"; ### MER4_2q21.1e ### chr2 rmsk gene 131558160 131564240 . + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0104"; model_cov "4574"; model_pct "69.3"; chr2 rmsk exon 131558160 131558366 1089 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5989"; repStart "284"; chr2 rmsk exon 131558345 131558689 998 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "1283"; repFamily "ERV1"; repLeft "-5315"; repStart "1005"; chr2 rmsk exon 131558716 131558922 3659 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "-4588"; repStart "1804"; chr2 rmsk exon 131559620 131560099 3659 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "2521"; repFamily "ERV1"; repLeft "-4077"; repStart "2011"; chr2 rmsk exon 131560304 131560848 2204 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3278"; repStart "2737"; chr2 rmsk exon 131560852 131561401 3013 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "4493"; repFamily "ERV1"; repLeft "-2105"; repStart "3924"; chr2 rmsk exon 131561851 131563804 10109 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0104"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "4494"; chr2 rmsk exon 131563807 131564240 2849 + . gene_id "MER4_2q21.1e"; transcript_id "MER4_2q21.1e"; locus "MER4_2q21.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0104"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERV316A3_2q21.2a ### chr2 rmsk gene 131738683 131739547 . - . gene_id "ERV316A3_2q21.2a"; transcript_id "ERV316A3_2q21.2a"; locus "ERV316A3_2q21.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0305"; model_cov "547"; model_pct "10.5"; chr2 rmsk exon 131738683 131738807 260 - . gene_id "ERV316A3_2q21.2a"; transcript_id "ERV316A3_2q21.2a"; locus "ERV316A3_2q21.2a"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0305"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "199"; repStart "-210"; chr2 rmsk exon 131739184 131739547 463 - . gene_id "ERV316A3_2q21.2a"; transcript_id "ERV316A3_2q21.2a"; locus "ERV316A3_2q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0305"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4232"; repStart "-447"; ### ERVLB4_2q21.2a ### chr2 rmsk gene 131866427 131868682 . + . gene_id "ERVLB4_2q21.2a"; transcript_id "ERVLB4_2q21.2a"; locus "ERVLB4_2q21.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0232"; model_cov "1401"; model_pct "24.5"; chr2 rmsk exon 131866427 131866799 1075 + . gene_id "ERVLB4_2q21.2a"; transcript_id "ERVLB4_2q21.2a"; locus "ERVLB4_2q21.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0232"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-116"; repStart "1"; chr2 rmsk exon 131866844 131867384 2545 + . gene_id "ERVLB4_2q21.2a"; transcript_id "ERVLB4_2q21.2a"; locus "ERVLB4_2q21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0232"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-5144"; repStart "5"; chr2 rmsk exon 131867381 131868210 4690 + . gene_id "ERVLB4_2q21.2a"; transcript_id "ERVLB4_2q21.2a"; locus "ERVLB4_2q21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0232"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "-228"; repStart "4650"; chr2 rmsk exon 131868254 131868682 1839 + . gene_id "ERVLB4_2q21.2a"; transcript_id "ERVLB4_2q21.2a"; locus "ERVLB4_2q21.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0232"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "1"; ### HERVIP10F_2q21.2 ### chr2 rmsk gene 132139445 132148063 . - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0019"; model_cov "6783"; model_pct "87.7"; chr2 rmsk exon 132139445 132139964 2608 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr2 rmsk exon 132139987 132140037 235 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "51"; repFamily "ERV1"; repLeft "1"; repStart "-496"; chr2 rmsk exon 132140042 132141970 12048 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "5804"; repStart "-7"; chr2 rmsk exon 132141952 132145323 30465 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "5115"; repFamily "ERV1"; repLeft "1778"; repStart "-2622"; chr2 rmsk exon 132145622 132147095 30465 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "1893"; repFamily "ERV1"; repLeft "373"; repStart "-5844"; chr2 rmsk exon 132147551 132148063 2489 - . gene_id "HERVIP10F_2q21.2"; transcript_id "HERVIP10F_2q21.2"; locus "HERVIP10F_2q21.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0019"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "3"; repStart "-62"; ### ERV316A3_2q21.2b ### chr2 rmsk gene 132192221 132194743 . + . gene_id "ERV316A3_2q21.2b"; transcript_id "ERV316A3_2q21.2b"; locus "ERV316A3_2q21.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0307"; model_cov "2070"; model_pct "39.6"; chr2 rmsk exon 132192221 132193428 3017 + . gene_id "ERV316A3_2q21.2b"; transcript_id "ERV316A3_2q21.2b"; locus "ERV316A3_2q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0307"; repClass "LTR"; repEnd "4211"; repFamily "ERVL"; repLeft "-1015"; repStart "2875"; chr2 rmsk exon 132193482 132194027 3017 + . gene_id "ERV316A3_2q21.2b"; transcript_id "ERV316A3_2q21.2b"; locus "ERV316A3_2q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0307"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4212"; chr2 rmsk exon 132194157 132194286 414 + . gene_id "ERV316A3_2q21.2b"; transcript_id "ERV316A3_2q21.2b"; locus "ERV316A3_2q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0307"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-28"; repStart "5069"; chr2 rmsk exon 132194494 132194743 660 + . gene_id "ERV316A3_2q21.2b"; transcript_id "ERV316A3_2q21.2b"; locus "ERV316A3_2q21.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0307"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-7"; repStart "158"; ### ERVLE_2q21.2a ### chr2 rmsk gene 132471345 132475755 . - . gene_id "ERVLE_2q21.2a"; transcript_id "ERVLE_2q21.2a"; locus "ERVLE_2q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0533"; model_cov "4536"; model_pct "80.0"; chr2 rmsk exon 132471345 132472958 1676 - . gene_id "ERVLE_2q21.2a"; transcript_id "ERVLE_2q21.2a"; locus "ERVLE_2q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0533"; repClass "LTR"; repEnd "4901"; repFamily "ERVL"; repLeft "3031"; repStart "-766"; chr2 rmsk exon 132473075 132475755 2675 - . gene_id "ERVLE_2q21.2a"; transcript_id "ERVLE_2q21.2a"; locus "ERVLE_2q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0533"; repClass "LTR"; repEnd "3730"; repFamily "ERVL"; repLeft "1064"; repStart "-1937"; ### HUERSP1_2q21.2 ### chr2 rmsk gene 133871837 133878829 . - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0027"; model_cov "6461"; model_pct "100.0"; chr2 rmsk exon 133871837 133872238 3509 - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0027"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "165"; repStart "-104"; chr2 rmsk exon 133872527 133872697 3509 - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0027"; repClass "LTR"; repEnd "164"; repFamily "ERV1"; repLeft "1"; repStart "-527"; chr2 rmsk exon 133872698 133874683 27837 - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0027"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "3835"; repStart "0"; chr2 rmsk exon 133874734 133878689 27837 - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0027"; repClass "LTR"; repEnd "4035"; repFamily "ERV1"; repLeft "2"; repStart "-2228"; chr2 rmsk exon 133878690 133878829 976 - . gene_id "HUERSP1_2q21.2"; transcript_id "HUERSP1_2q21.2"; locus "HUERSP1_2q21.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0027"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "546"; repStart "0"; ### HARLEQUIN_2q21.2 ### chr2 rmsk gene 133893939 133898595 . + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0035"; model_cov "3498"; model_pct "50.7"; chr2 rmsk exon 133893939 133894399 3373 + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0035"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr2 rmsk exon 133894400 133896001 3608 + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0035"; repClass "LTR"; repEnd "3144"; repFamily "ERV1"; repLeft "-3752"; repStart "1795"; chr2 rmsk exon 133895992 133898034 15461 + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0035"; repClass "LTR"; repEnd "3859"; repFamily "ERV1"; repLeft "-3037"; repStart "1807"; chr2 rmsk exon 133898031 133898128 715 + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0035"; repClass "LTR"; repEnd "6893"; repFamily "ERV1"; repLeft "-3"; repStart "6796"; chr2 rmsk exon 133898132 133898595 3301 + . gene_id "HARLEQUIN_2q21.2"; transcript_id "HARLEQUIN_2q21.2"; locus "HARLEQUIN_2q21.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0035"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_2q21.2b ### chr2 rmsk gene 133962531 133967667 . + . gene_id "ERVLB4_2q21.2b"; transcript_id "ERVLB4_2q21.2b"; locus "ERVLB4_2q21.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0233"; model_cov "4693"; model_pct "82.1"; chr2 rmsk exon 133962531 133966928 10678 + . gene_id "ERVLB4_2q21.2b"; transcript_id "ERVLB4_2q21.2b"; locus "ERVLB4_2q21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0233"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "1020"; chr2 rmsk exon 133966929 133967090 1481 + . gene_id "ERVLB4_2q21.2b"; transcript_id "ERVLB4_2q21.2b"; locus "ERVLB4_2q21.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0233"; repClass "LTR"; repEnd "178"; repFamily "ERVL"; repLeft "-485"; repStart "1"; chr2 rmsk exon 133967378 133967667 1481 + . gene_id "ERVLB4_2q21.2b"; transcript_id "ERVLB4_2q21.2b"; locus "ERVLB4_2q21.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0233"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-187"; repStart "179"; ### ERV316A3_2q21.2c ### chr2 rmsk gene 134034572 134037411 . - . gene_id "ERV316A3_2q21.2c"; transcript_id "ERV316A3_2q21.2c"; locus "ERV316A3_2q21.2c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0308"; model_cov "1583"; model_pct "30.3"; chr2 rmsk exon 134034572 134035118 1461 - . gene_id "ERV316A3_2q21.2c"; transcript_id "ERV316A3_2q21.2c"; locus "ERV316A3_2q21.2c"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0308"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 134035351 134036764 2626 - . gene_id "ERV316A3_2q21.2c"; transcript_id "ERV316A3_2q21.2c"; locus "ERV316A3_2q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0308"; repClass "LTR"; repEnd "4912"; repFamily "ERVL"; repLeft "3447"; repStart "-314"; chr2 rmsk exon 134036771 134036883 391 - . gene_id "ERV316A3_2q21.2c"; transcript_id "ERV316A3_2q21.2c"; locus "ERV316A3_2q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0308"; repClass "LTR"; repEnd "2771"; repFamily "ERVL"; repLeft "2653"; repStart "-2455"; chr2 rmsk exon 134037221 134037411 598 - . gene_id "ERV316A3_2q21.2c"; transcript_id "ERV316A3_2q21.2c"; locus "ERV316A3_2q21.2c"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0308"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "373"; repStart "-4"; ### ERVLE_2q21.2b ### chr2 rmsk gene 134114354 134116478 . - . gene_id "ERVLE_2q21.2b"; transcript_id "ERVLE_2q21.2b"; locus "ERVLE_2q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0534"; model_cov "1278"; model_pct "22.6"; chr2 rmsk exon 134114354 134114579 665 - . gene_id "ERVLE_2q21.2b"; transcript_id "ERVLE_2q21.2b"; locus "ERVLE_2q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0534"; repClass "LTR"; repEnd "1346"; repFamily "ERVL"; repLeft "1110"; repStart "-4321"; chr2 rmsk exon 134114854 134115615 1366 - . gene_id "ERVLE_2q21.2b"; transcript_id "ERVLE_2q21.2b"; locus "ERVLE_2q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0534"; repClass "LTR"; repEnd "1092"; repFamily "ERVL"; repLeft "301"; repStart "-4575"; chr2 rmsk exon 134115910 134115981 1366 - . gene_id "ERVLE_2q21.2b"; transcript_id "ERVLE_2q21.2b"; locus "ERVLE_2q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0534"; repClass "LTR"; repEnd "300"; repFamily "ERVL"; repLeft "250"; repStart "-5367"; chr2 rmsk exon 134116281 134116478 1366 - . gene_id "ERVLE_2q21.2b"; transcript_id "ERVLE_2q21.2b"; locus "ERVLE_2q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0534"; repClass "LTR"; repEnd "249"; repFamily "ERVL"; repLeft "48"; repStart "-5418"; ### MER4B_2q21.2 ### chr2 rmsk gene 134221075 134224105 . - . gene_id "MER4B_2q21.2"; transcript_id "MER4B_2q21.2"; locus "MER4B_2q21.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0062"; model_cov "1491"; model_pct "22.1"; chr2 rmsk exon 134221075 134221884 5057 - . gene_id "MER4B_2q21.2"; transcript_id "MER4B_2q21.2"; locus "MER4B_2q21.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0062"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 134222713 134224105 7997 - . gene_id "MER4B_2q21.2"; transcript_id "MER4B_2q21.2"; locus "MER4B_2q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0062"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "5154"; repStart "-113"; ### ERV316A3_2q21.3 ### chr2 rmsk gene 135885578 135890637 . - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0309"; model_cov "2110"; model_pct "40.4"; chr2 rmsk exon 135885578 135885971 1244 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-10"; repStart "-30"; chr2 rmsk exon 135886015 135886652 1293 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "4798"; repFamily "ERVL"; repLeft "4260"; repStart "-428"; chr2 rmsk exon 135887192 135887319 1079 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "4464"; repFamily "ERVL"; repLeft "4337"; repStart "-762"; chr2 rmsk exon 135887946 135888101 1079 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "4336"; repFamily "ERVL"; repLeft "4174"; repStart "-890"; chr2 rmsk exon 135888516 135888641 718 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "4173"; repFamily "ERVL"; repLeft "4050"; repStart "-1053"; chr2 rmsk exon 135889204 135889939 2430 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "3231"; repStart "-1224"; chr2 rmsk exon 135890234 135890637 2430 - . gene_id "ERV316A3_2q21.3"; transcript_id "ERV316A3_2q21.3"; locus "ERV316A3_2q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0309"; repClass "LTR"; repEnd "3230"; repFamily "ERVL"; repLeft "2841"; repStart "-1996"; ### HML6_2q21.3 ### chr2 rmsk gene 136071818 136077261 . - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0009"; model_cov "4574"; model_pct "63.5"; chr2 rmsk exon 136071818 136072260 3285 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr2 rmsk exon 136072261 136073225 7168 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "6223"; repStart "0"; chr2 rmsk exon 136073229 136073888 4410 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "5306"; repFamily "ERVK"; repLeft "4644"; repStart "-1896"; chr2 rmsk exon 136073888 136074065 1393 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "4089"; repStart "-2936"; chr2 rmsk exon 136074066 136076789 18814 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "2757"; repFamily "ERVK"; repLeft "1"; repStart "-4445"; chr2 rmsk exon 136076807 136077261 3439 - . gene_id "HML6_2q21.3"; transcript_id "HML6_2q21.3"; locus "HML6_2q21.3"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0009"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "1"; repStart "-18"; ### ERV316A3_2q22.1a ### chr2 rmsk gene 136144277 136150317 . + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0311"; model_cov "4497"; model_pct "86.1"; chr2 rmsk exon 136144277 136144687 1435 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr2 rmsk exon 136144726 136144839 2762 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "-4833"; repStart "272"; chr2 rmsk exon 136145147 136147228 11153 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "2202"; repFamily "ERVL"; repLeft "-3024"; repStart "164"; chr2 rmsk exon 136147514 136149270 11153 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1257"; repStart "2203"; chr2 rmsk exon 136149276 136149850 2324 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "4570"; chr2 rmsk exon 136149904 136150317 1512 + . gene_id "ERV316A3_2q22.1a"; transcript_id "ERV316A3_2q22.1a"; locus "ERV316A3_2q22.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0311"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "13"; ### HERVW_2q22.1 ### chr2 rmsk gene 136201887 136203359 . - . gene_id "HERVW_2q22.1"; transcript_id "HERVW_2q22.1"; locus "HERVW_2q22.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0042"; model_cov "1173"; model_pct "13.6"; chr2 rmsk exon 136201887 136202210 2553 - . gene_id "HERVW_2q22.1"; transcript_id "HERVW_2q22.1"; locus "HERVW_2q22.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0042"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr2 rmsk exon 136202211 136203188 8472 - . gene_id "HERVW_2q22.1"; transcript_id "HERVW_2q22.1"; locus "HERVW_2q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0042"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7640"; repStart "0"; chr2 rmsk exon 136203175 136203359 1423 - . gene_id "HERVW_2q22.1"; transcript_id "HERVW_2q22.1"; locus "HERVW_2q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0042"; repClass "LTR"; repEnd "5264"; repFamily "ERV1"; repLeft "5077"; repStart "-3362"; ### HERVL18_2q22.1 ### chr2 rmsk gene 137380712 137383860 . + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0025"; model_cov "3043"; model_pct "50.3"; chr2 rmsk exon 137380712 137381087 2369 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 137381102 137382008 2349 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "9"; chr2 rmsk exon 137382041 137382303 1235 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr2 rmsk exon 137382303 137383162 5720 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "3578"; repFamily "ERVL"; repLeft "-2469"; repStart "2720"; chr2 rmsk exon 137383166 137383258 634 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr2 rmsk exon 137383259 137383317 339 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "5209"; chr2 rmsk exon 137383325 137383418 530 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5952"; chr2 rmsk exon 137383485 137383860 2360 + . gene_id "HERVL18_2q22.1"; transcript_id "HERVL18_2q22.1"; locus "HERVL18_2q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0025"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_2q22.1a ### chr2 rmsk gene 137514142 137518957 . + . gene_id "HERVL_2q22.1a"; transcript_id "HERVL_2q22.1a"; locus "HERVL_2q22.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0180"; model_cov "4361"; model_pct "77.1"; chr2 rmsk exon 137514142 137514586 3366 + . gene_id "HERVL_2q22.1a"; transcript_id "HERVL_2q22.1a"; locus "HERVL_2q22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0180"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 137514587 137518957 33446 + . gene_id "HERVL_2q22.1a"; transcript_id "HERVL_2q22.1a"; locus "HERVL_2q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0180"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "-1292"; repStart "1"; ### HERVH_2q22.1a ### chr2 rmsk gene 137684383 137688660 . - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0161"; model_cov "3885"; model_pct "50.4"; chr2 rmsk exon 137684383 137684632 1729 - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0161"; repClass "LTR"; repEnd "4736"; repFamily "ERV1"; repLeft "4488"; repStart "-2977"; chr2 rmsk exon 137684635 137685137 3365 - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0161"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 137685128 137685275 852 - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0161"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 137685270 137688251 20100 - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0161"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 137688254 137688660 2697 - . gene_id "HERVH_2q22.1a"; transcript_id "HERVH_2q22.1a"; locus "HERVH_2q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0161"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_2q22.1a ### chr2 rmsk gene 137694385 137698075 . + . gene_id "ERVLE_2q22.1a"; transcript_id "ERVLE_2q22.1a"; locus "ERVLE_2q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0535"; model_cov "2532"; model_pct "44.7"; chr2 rmsk exon 137694385 137695117 574 + . gene_id "ERVLE_2q22.1a"; transcript_id "ERVLE_2q22.1a"; locus "ERVLE_2q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0535"; repClass "LTR"; repEnd "2378"; repFamily "ERVL"; repLeft "-3289"; repStart "1647"; chr2 rmsk exon 137696294 137697507 2218 + . gene_id "ERVLE_2q22.1a"; transcript_id "ERVLE_2q22.1a"; locus "ERVLE_2q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0535"; repClass "LTR"; repEnd "3679"; repFamily "ERVL"; repLeft "-1988"; repStart "2380"; chr2 rmsk exon 137697587 137698075 578 + . gene_id "ERVLE_2q22.1a"; transcript_id "ERVLE_2q22.1a"; locus "ERVLE_2q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0535"; repClass "LTR"; repEnd "4239"; repFamily "ERVL"; repLeft "-1428"; repStart "3737"; ### HERVL_2q22.1b ### chr2 rmsk gene 137719909 137721744 . + . gene_id "HERVL_2q22.1b"; transcript_id "HERVL_2q22.1b"; locus "HERVL_2q22.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0181"; model_cov "1314"; model_pct "23.2"; chr2 rmsk exon 137719909 137720361 2933 + . gene_id "HERVL_2q22.1b"; transcript_id "HERVL_2q22.1b"; locus "HERVL_2q22.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0181"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr2 rmsk exon 137720387 137720426 2933 + . gene_id "HERVL_2q22.1b"; transcript_id "HERVL_2q22.1b"; locus "HERVL_2q22.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0181"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "414"; chr2 rmsk exon 137720427 137721744 9937 + . gene_id "HERVL_2q22.1b"; transcript_id "HERVL_2q22.1b"; locus "HERVL_2q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0181"; repClass "LTR"; repEnd "1315"; repFamily "ERVL"; repLeft "-4339"; repStart "1"; ### HERVL40_2q22.1 ### chr2 rmsk gene 137748325 137751425 . + . gene_id "HERVL40_2q22.1"; transcript_id "HERVL40_2q22.1"; locus "HERVL40_2q22.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0043"; model_cov "1636"; model_pct "29.6"; chr2 rmsk exon 137748325 137749676 4489 + . gene_id "HERVL40_2q22.1"; transcript_id "HERVL40_2q22.1"; locus "HERVL40_2q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0043"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "3269"; chr2 rmsk exon 137750680 137750916 916 + . gene_id "HERVL40_2q22.1"; transcript_id "HERVL40_2q22.1"; locus "HERVL40_2q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0043"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "-1"; repStart "5284"; chr2 rmsk exon 137750918 137751425 1392 + . gene_id "HERVL40_2q22.1"; transcript_id "HERVL40_2q22.1"; locus "HERVL40_2q22.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0043"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_2q22.1 ### chr2 rmsk gene 138990050 138992107 . + . gene_id "MER41_2q22.1"; transcript_id "MER41_2q22.1"; locus "MER41_2q22.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0062"; model_cov "1674"; model_pct "28.2"; chr2 rmsk exon 138990050 138990202 1175 + . gene_id "MER41_2q22.1"; transcript_id "MER41_2q22.1"; locus "MER41_2q22.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0062"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr2 rmsk exon 138990206 138991090 5947 + . gene_id "MER41_2q22.1"; transcript_id "MER41_2q22.1"; locus "MER41_2q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0062"; repClass "LTR"; repEnd "924"; repFamily "ERV1"; repLeft "-5022"; repStart "4"; chr2 rmsk exon 138991088 138991589 2250 + . gene_id "MER41_2q22.1"; transcript_id "MER41_2q22.1"; locus "MER41_2q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0062"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1395"; chr2 rmsk exon 138991953 138992107 817 + . gene_id "MER41_2q22.1"; transcript_id "MER41_2q22.1"; locus "MER41_2q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0062"; repClass "LTR"; repEnd "2604"; repFamily "ERV1"; repLeft "-3342"; repStart "2472"; ### ERVLE_2q22.1b ### chr2 rmsk gene 139021777 139024909 . + . gene_id "ERVLE_2q22.1b"; transcript_id "ERVLE_2q22.1b"; locus "ERVLE_2q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0536"; model_cov "3132"; model_pct "55.3"; chr2 rmsk exon 139021777 139022586 885 + . gene_id "ERVLE_2q22.1b"; transcript_id "ERVLE_2q22.1b"; locus "ERVLE_2q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0536"; repClass "LTR"; repEnd "1064"; repFamily "ERVL"; repLeft "-4603"; repStart "263"; chr2 rmsk exon 139022581 139023007 1017 + . gene_id "ERVLE_2q22.1b"; transcript_id "ERVLE_2q22.1b"; locus "ERVLE_2q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0536"; repClass "LTR"; repEnd "3453"; repFamily "ERVL"; repLeft "-2214"; repStart "3022"; chr2 rmsk exon 139023099 139024909 3595 + . gene_id "ERVLE_2q22.1b"; transcript_id "ERVLE_2q22.1b"; locus "ERVLE_2q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0536"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "3752"; ### HERVL_2q22.1c ### chr2 rmsk gene 139208198 139215001 . + . gene_id "HERVL_2q22.1c"; transcript_id "HERVL_2q22.1c"; locus "HERVL_2q22.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0182"; model_cov "5650"; model_pct "99.9"; chr2 rmsk exon 139208198 139208633 2509 + . gene_id "HERVL_2q22.1c"; transcript_id "HERVL_2q22.1c"; locus "HERVL_2q22.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0182"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 139208634 139210896 43868 + . gene_id "HERVL_2q22.1c"; transcript_id "HERVL_2q22.1c"; locus "HERVL_2q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0182"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "-3390"; repStart "1"; chr2 rmsk exon 139211212 139214597 43868 + . gene_id "HERVL_2q22.1c"; transcript_id "HERVL_2q22.1c"; locus "HERVL_2q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0182"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "2265"; chr2 rmsk exon 139214600 139215001 2662 + . gene_id "HERVL_2q22.1c"; transcript_id "HERVL_2q22.1c"; locus "HERVL_2q22.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0182"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_2q22.1c ### chr2 rmsk gene 139384359 139387090 . - . gene_id "ERVLE_2q22.1c"; transcript_id "ERVLE_2q22.1c"; locus "ERVLE_2q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0537"; model_cov "2411"; model_pct "42.5"; chr2 rmsk exon 139384359 139385054 2434 - . gene_id "ERVLE_2q22.1c"; transcript_id "ERVLE_2q22.1c"; locus "ERVLE_2q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0537"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "3945"; repStart "-1068"; chr2 rmsk exon 139385345 139386804 2434 - . gene_id "ERVLE_2q22.1c"; transcript_id "ERVLE_2q22.1c"; locus "ERVLE_2q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0537"; repClass "LTR"; repEnd "3944"; repFamily "ERVL"; repLeft "2392"; repStart "-1723"; chr2 rmsk exon 139386893 139387090 274 - . gene_id "ERVLE_2q22.1c"; transcript_id "ERVLE_2q22.1c"; locus "ERVLE_2q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0537"; repClass "LTR"; repEnd "2330"; repFamily "ERVL"; repLeft "2125"; repStart "-3337"; ### MER101_2q22.1 ### chr2 rmsk gene 139432389 139434514 . - . gene_id "MER101_2q22.1"; transcript_id "MER101_2q22.1"; locus "MER101_2q22.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0070"; model_cov "1469"; model_pct "22.1"; chr2 rmsk exon 139432389 139432855 1540 - . gene_id "MER101_2q22.1"; transcript_id "MER101_2q22.1"; locus "MER101_2q22.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0070"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 139432856 139433312 1763 - . gene_id "MER101_2q22.1"; transcript_id "MER101_2q22.1"; locus "MER101_2q22.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0070"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6167"; repStart "0"; chr2 rmsk exon 139433342 139434514 3228 - . gene_id "MER101_2q22.1"; transcript_id "MER101_2q22.1"; locus "MER101_2q22.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0070"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3605"; repStart "-2037"; ### LTR57_2q22.1 ### chr2 rmsk gene 139670071 139671212 . - . gene_id "LTR57_2q22.1"; transcript_id "LTR57_2q22.1"; locus "LTR57_2q22.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0027"; model_cov "1196"; model_pct "22.4"; chr2 rmsk exon 139670071 139671212 4322 - . gene_id "LTR57_2q22.1"; transcript_id "LTR57_2q22.1"; locus "LTR57_2q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0027"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "397"; repStart "-3750"; ### MER4_2q22.1a ### chr2 rmsk gene 139725709 139730770 . + . gene_id "MER4_2q22.1a"; transcript_id "MER4_2q22.1a"; locus "MER4_2q22.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0107"; model_cov "5327"; model_pct "80.7"; chr2 rmsk exon 139725709 139728104 5783 + . gene_id "MER4_2q22.1a"; transcript_id "MER4_2q22.1a"; locus "MER4_2q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0107"; repClass "LTR"; repEnd "4632"; repFamily "ERV1"; repLeft "-1966"; repStart "786"; chr2 rmsk exon 139728441 139728680 5783 + . gene_id "MER4_2q22.1a"; transcript_id "MER4_2q22.1a"; locus "MER4_2q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0107"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "-1734"; repStart "4633"; chr2 rmsk exon 139729049 139730315 5317 + . gene_id "MER4_2q22.1a"; transcript_id "MER4_2q22.1a"; locus "MER4_2q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0107"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "5347"; chr2 rmsk exon 139730320 139730770 2842 + . gene_id "MER4_2q22.1a"; transcript_id "MER4_2q22.1a"; locus "MER4_2q22.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0107"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q22.1d ### chr2 rmsk gene 140212620 140214077 . - . gene_id "ERVLE_2q22.1d"; transcript_id "ERVLE_2q22.1d"; locus "ERVLE_2q22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0538"; model_cov "1005"; model_pct "17.7"; chr2 rmsk exon 140212620 140213215 907 - . gene_id "ERVLE_2q22.1d"; transcript_id "ERVLE_2q22.1d"; locus "ERVLE_2q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0538"; repClass "LTR"; repEnd "2583"; repFamily "ERVL"; repLeft "1956"; repStart "-3084"; chr2 rmsk exon 140213373 140213535 423 - . gene_id "ERVLE_2q22.1d"; transcript_id "ERVLE_2q22.1d"; locus "ERVLE_2q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0538"; repClass "LTR"; repEnd "1751"; repFamily "ERVL"; repLeft "1595"; repStart "-3916"; chr2 rmsk exon 140213869 140214077 423 - . gene_id "ERVLE_2q22.1d"; transcript_id "ERVLE_2q22.1d"; locus "ERVLE_2q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0538"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "1372"; repStart "-4073"; ### HERVH_2q22.1b ### chr2 rmsk gene 140426394 140432402 . + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0163"; model_cov "5306"; model_pct "68.8"; chr2 rmsk exon 140426394 140426801 2709 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr2 rmsk exon 140426804 140427272 3145 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr2 rmsk exon 140427331 140429555 14626 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr2 rmsk exon 140429535 140429682 965 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 140429673 140431397 8320 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr2 rmsk exon 140431399 140431614 1332 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 140431613 140431991 2391 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 140431992 140432402 2637 + . gene_id "HERVH_2q22.1b"; transcript_id "HERVH_2q22.1b"; locus "HERVH_2q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0163"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q22.1b ### chr2 rmsk gene 140734634 140738788 . + . gene_id "ERV316A3_2q22.1b"; transcript_id "ERV316A3_2q22.1b"; locus "ERV316A3_2q22.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0313"; model_cov "2394"; model_pct "45.8"; chr2 rmsk exon 140734634 140735040 1484 + . gene_id "ERV316A3_2q22.1b"; transcript_id "ERV316A3_2q22.1b"; locus "ERV316A3_2q22.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0313"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "21"; chr2 rmsk exon 140735044 140736368 3425 + . gene_id "ERV316A3_2q22.1b"; transcript_id "ERV316A3_2q22.1b"; locus "ERV316A3_2q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0313"; repClass "LTR"; repEnd "1355"; repFamily "ERVL"; repLeft "-3871"; repStart "8"; chr2 rmsk exon 140736850 140737985 3022 + . gene_id "ERV316A3_2q22.1b"; transcript_id "ERV316A3_2q22.1b"; locus "ERV316A3_2q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0313"; repClass "LTR"; repEnd "2422"; repFamily "ERVL"; repLeft "-2804"; repStart "1375"; chr2 rmsk exon 140738421 140738788 996 + . gene_id "ERV316A3_2q22.1b"; transcript_id "ERV316A3_2q22.1b"; locus "ERV316A3_2q22.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0313"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-43"; repStart "0"; ### MER4_2q22.1b ### chr2 rmsk gene 140871729 140877948 . + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0108"; model_cov "5330"; model_pct "80.8"; chr2 rmsk exon 140871729 140872360 8959 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0108"; repClass "LTR"; repEnd "1505"; repFamily "ERV1"; repLeft "-5093"; repStart "865"; chr2 rmsk exon 140872389 140873346 8959 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0108"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "1506"; chr2 rmsk exon 140873605 140874495 4049 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0108"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2737"; chr2 rmsk exon 140874495 140874736 15927 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0108"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "-2528"; repStart "3837"; chr2 rmsk exon 140875036 140877490 15927 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0108"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4071"; chr2 rmsk exon 140877498 140877948 2848 + . gene_id "MER4_2q22.1b"; transcript_id "MER4_2q22.1b"; locus "MER4_2q22.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0108"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_2q22.2 ### chr2 rmsk gene 141997126 141998303 . + . gene_id "MER4_2q22.2"; transcript_id "MER4_2q22.2"; locus "MER4_2q22.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0109"; model_cov "994"; model_pct "15.1"; chr2 rmsk exon 141997126 141997415 3522 + . gene_id "MER4_2q22.2"; transcript_id "MER4_2q22.2"; locus "MER4_2q22.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0109"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5449"; repStart "852"; chr2 rmsk exon 141997471 141997481 3522 + . gene_id "MER4_2q22.2"; transcript_id "MER4_2q22.2"; locus "MER4_2q22.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0109"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "-5448"; repStart "1150"; chr2 rmsk exon 141997647 141998303 3522 + . gene_id "MER4_2q22.2"; transcript_id "MER4_2q22.2"; locus "MER4_2q22.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0109"; repClass "LTR"; repEnd "1847"; repFamily "ERV1"; repLeft "-4751"; repStart "1150"; ### HERVH_2q22.2 ### chr2 rmsk gene 142489679 142495325 . - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0164"; model_cov "5116"; model_pct "66.3"; chr2 rmsk exon 142489679 142490075 2094 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; chr2 rmsk exon 142490076 142490530 2678 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr2 rmsk exon 142490520 142492037 7119 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "3492"; repStart "-2702"; chr2 rmsk exon 142492028 142492177 947 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 142492148 142494942 14281 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "1"; repStart "-4709"; chr2 rmsk exon 142494953 142495325 1983 - . gene_id "HERVH_2q22.2"; transcript_id "HERVH_2q22.2"; locus "HERVH_2q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0164"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### ERV316A3_2q22.2a ### chr2 rmsk gene 142578069 142581930 . + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0314"; model_cov "2676"; model_pct "51.2"; chr2 rmsk exon 142578069 142578511 1472 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr2 rmsk exon 142578521 142579118 2184 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "2626"; repFamily "ERVL"; repLeft "-2600"; repStart "2028"; chr2 rmsk exon 142579252 142580405 3372 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "3784"; repFamily "ERVL"; repLeft "-1442"; repStart "2621"; chr2 rmsk exon 142580708 142581076 3372 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "4459"; repFamily "ERVL"; repLeft "-767"; repStart "4075"; chr2 rmsk exon 142581089 142581578 1661 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4695"; chr2 rmsk exon 142581589 142581708 489 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-339"; repStart "3"; chr2 rmsk exon 142581720 142581930 652 + . gene_id "ERV316A3_2q22.2a"; transcript_id "ERV316A3_2q22.2a"; locus "ERV316A3_2q22.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0314"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-13"; repStart "234"; ### HERVW_2q22.2 ### chr2 rmsk gene 142899925 142907899 . - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0044"; model_cov "5812"; model_pct "67.4"; chr2 rmsk exon 142899925 142900684 5913 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 142900685 142900972 2071 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 142901071 142901109 281 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "7547"; repFamily "ERV1"; repLeft "7509"; repStart "-1079"; chr2 rmsk exon 142901102 142904677 27431 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr2 rmsk exon 142904667 142905103 3051 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "1536"; repStart "-6616"; chr2 rmsk exon 142905267 142905981 5036 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "1548"; repFamily "ERV1"; repLeft "831"; repStart "-7078"; chr2 rmsk exon 142906415 142907123 4696 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "2"; repStart "-7921"; chr2 rmsk exon 142907124 142907899 5282 - . gene_id "HERVW_2q22.2"; transcript_id "HERVW_2q22.2"; locus "HERVW_2q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0044"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_2q22.2 ### chr2 rmsk gene 142930835 142937291 . - . gene_id "HERVH48_2q22.2"; transcript_id "HERVH48_2q22.2"; locus "HERVH48_2q22.2"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0011"; model_cov "5834"; model_pct "87.7"; chr2 rmsk exon 142930835 142931241 3123 - . gene_id "HERVH48_2q22.2"; transcript_id "HERVH48_2q22.2"; locus "HERVH48_2q22.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0011"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 142931242 142931426 1179 - . gene_id "HERVH48_2q22.2"; transcript_id "HERVH48_2q22.2"; locus "HERVH48_2q22.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0011"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6472"; repStart "0"; chr2 rmsk exon 142931427 142936889 28673 - . gene_id "HERVH48_2q22.2"; transcript_id "HERVH48_2q22.2"; locus "HERVH48_2q22.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0011"; repClass "LTR"; repEnd "5653"; repFamily "ERV1"; repLeft "1"; repStart "-1001"; chr2 rmsk exon 142936892 142937291 2801 - . gene_id "HERVH48_2q22.2"; transcript_id "HERVH48_2q22.2"; locus "HERVH48_2q22.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0011"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERV316A3_2q22.2b ### chr2 rmsk gene 143261716 143264508 . - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0315"; model_cov "2185"; model_pct "41.8"; chr2 rmsk exon 143261716 143262228 885 - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0315"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 143262382 143263413 819 - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0315"; repClass "LTR"; repEnd "4820"; repFamily "ERVL"; repLeft "3775"; repStart "-406"; chr2 rmsk exon 143263422 143263619 527 - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0315"; repClass "LTR"; repEnd "3825"; repFamily "ERVL"; repLeft "3545"; repStart "-1401"; chr2 rmsk exon 143263645 143263907 1103 - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0315"; repClass "LTR"; repEnd "3778"; repFamily "ERVL"; repLeft "3485"; repStart "-1448"; chr2 rmsk exon 143263944 143264508 1103 - . gene_id "ERV316A3_2q22.2b"; transcript_id "ERV316A3_2q22.2b"; locus "ERV316A3_2q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0315"; repClass "LTR"; repEnd "3484"; repFamily "ERVL"; repLeft "2917"; repStart "-1742"; ### ERV316A3_2q22.3a ### chr2 rmsk gene 143751094 143753311 . - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0316"; model_cov "945"; model_pct "18.1"; chr2 rmsk exon 143751094 143751443 766 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "1"; repStart "-81"; chr2 rmsk exon 143751595 143751962 1062 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "5056"; repFamily "ERVL"; repLeft "4676"; repStart "-170"; chr2 rmsk exon 143752029 143752277 869 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "1541"; repFamily "ERVL"; repLeft "1289"; repStart "-3685"; chr2 rmsk exon 143752294 143752603 766 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "545"; repFamily "ERVL"; repLeft "232"; repStart "-4681"; chr2 rmsk exon 143752607 143752855 688 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "187"; repStart "-2"; chr2 rmsk exon 143753148 143753311 688 - . gene_id "ERV316A3_2q22.3a"; transcript_id "ERV316A3_2q22.3a"; locus "ERV316A3_2q22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0316"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "16"; repStart "-265"; ### ERVL_2q22.3 ### chr2 rmsk gene 144551056 144552454 . - . gene_id "ERVL_2q22.3"; transcript_id "ERVL_2q22.3"; locus "ERVL_2q22.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0047"; model_cov "1425"; model_pct "24.8"; chr2 rmsk exon 144551056 144552454 8647 - . gene_id "ERVL_2q22.3"; transcript_id "ERVL_2q22.3"; locus "ERVL_2q22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0047"; repClass "LTR"; repEnd "4099"; repFamily "ERVL"; repLeft "2674"; repStart "-1658"; ### ERVLE_2q22.3a ### chr2 rmsk gene 144738598 144739285 . + . gene_id "ERVLE_2q22.3a"; transcript_id "ERVLE_2q22.3a"; locus "ERVLE_2q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0540"; model_cov "710"; model_pct "12.5"; chr2 rmsk exon 144738598 144739285 1617 + . gene_id "ERVLE_2q22.3a"; transcript_id "ERVLE_2q22.3a"; locus "ERVLE_2q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0540"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "-3873"; repStart "1084"; ### ERVLE_2q22.3b ### chr2 rmsk gene 145070326 145071899 . - . gene_id "ERVLE_2q22.3b"; transcript_id "ERVLE_2q22.3b"; locus "ERVLE_2q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0541"; model_cov "1675"; model_pct "29.6"; chr2 rmsk exon 145070326 145070503 493 - . gene_id "ERVLE_2q22.3b"; transcript_id "ERVLE_2q22.3b"; locus "ERVLE_2q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0541"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "5033"; repStart "-446"; chr2 rmsk exon 145070518 145071899 3248 - . gene_id "ERVLE_2q22.3b"; transcript_id "ERVLE_2q22.3b"; locus "ERVLE_2q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0541"; repClass "LTR"; repEnd "4988"; repFamily "ERVL"; repLeft "3501"; repStart "-679"; ### HERVL_2q22.3a ### chr2 rmsk gene 145093040 145094341 . - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0183"; model_cov "691"; model_pct "12.2"; chr2 rmsk exon 145093040 145093349 2307 - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0183"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "125"; repStart "0"; chr2 rmsk exon 145093418 145094106 5189 - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0183"; repClass "LTR"; repEnd "692"; repFamily "ERVL"; repLeft "1"; repStart "-4962"; chr2 rmsk exon 145094107 145094145 396 - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0183"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "408"; repStart "0"; chr2 rmsk exon 145094186 145094228 396 - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0183"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "360"; repStart "-46"; chr2 rmsk exon 145094224 145094341 949 - . gene_id "HERVL_2q22.3a"; transcript_id "HERVL_2q22.3a"; locus "HERVL_2q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0183"; repClass "LTR"; repEnd "118"; repFamily "ERVL"; repLeft "1"; repStart "-335"; ### ERV316A3_2q22.3b ### chr2 rmsk gene 145456100 145458831 . - . gene_id "ERV316A3_2q22.3b"; transcript_id "ERV316A3_2q22.3b"; locus "ERV316A3_2q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0318"; model_cov "2776"; model_pct "53.1"; chr2 rmsk exon 145456100 145458746 5911 - . gene_id "ERV316A3_2q22.3b"; transcript_id "ERV316A3_2q22.3b"; locus "ERV316A3_2q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0318"; repClass "LTR"; repEnd "2828"; repFamily "ERVL"; repLeft "52"; repStart "-2398"; chr2 rmsk exon 145458765 145458831 350 - . gene_id "ERV316A3_2q22.3b"; transcript_id "ERV316A3_2q22.3b"; locus "ERV316A3_2q22.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0318"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "414"; repStart "0"; ### ERV316A3_2q22.3c ### chr2 rmsk gene 145568458 145569941 . - . gene_id "ERV316A3_2q22.3c"; transcript_id "ERV316A3_2q22.3c"; locus "ERV316A3_2q22.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0319"; model_cov "1016"; model_pct "19.4"; chr2 rmsk exon 145568458 145568914 889 - . gene_id "ERV316A3_2q22.3c"; transcript_id "ERV316A3_2q22.3c"; locus "ERV316A3_2q22.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0319"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr2 rmsk exon 145568982 145569941 2033 - . gene_id "ERV316A3_2q22.3c"; transcript_id "ERV316A3_2q22.3c"; locus "ERV316A3_2q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0319"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "4155"; repStart "-55"; ### ERV316A3_2q22.3d ### chr2 rmsk gene 145884454 145888622 . - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0320"; model_cov "4525"; model_pct "86.6"; chr2 rmsk exon 145884454 145886414 3176 - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0320"; repClass "LTR"; repEnd "4349"; repFamily "ERVL"; repLeft "2106"; repStart "-877"; chr2 rmsk exon 145886420 145887114 1579 - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0320"; repClass "LTR"; repEnd "2865"; repFamily "ERVL"; repLeft "1512"; repStart "-2361"; chr2 rmsk exon 145887676 145887755 266 - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0320"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "1999"; repStart "-3148"; chr2 rmsk exon 145887766 145888115 1255 - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0320"; repClass "LTR"; repEnd "1433"; repFamily "ERVL"; repLeft "1086"; repStart "-3793"; chr2 rmsk exon 145888132 145888622 964 - . gene_id "ERV316A3_2q22.3d"; transcript_id "ERV316A3_2q22.3d"; locus "ERV316A3_2q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0320"; repClass "LTR"; repEnd "1050"; repFamily "ERVL"; repLeft "547"; repStart "-4176"; ### ERVLB4_2q22.3a ### chr2 rmsk gene 146098178 146105018 . + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0235"; model_cov "5421"; model_pct "94.9"; chr2 rmsk exon 146098178 146098617 1629 + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0235"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 146098631 146100164 18043 + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0235"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "-4093"; repStart "16"; chr2 rmsk exon 146100227 146101828 18043 + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0235"; repClass "LTR"; repEnd "3300"; repFamily "ERVL"; repLeft "-2414"; repStart "1622"; chr2 rmsk exon 146102184 146102694 18043 + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0235"; repClass "LTR"; repEnd "3833"; repFamily "ERVL"; repLeft "-1881"; repStart "3302"; chr2 rmsk exon 146103461 146105018 7348 + . gene_id "ERVLB4_2q22.3a"; transcript_id "ERVLB4_2q22.3a"; locus "ERVLB4_2q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0235"; repClass "LTR"; repEnd "5437"; repFamily "ERVL"; repLeft "-277"; repStart "3830"; ### ERV316A3_2q22.3e ### chr2 rmsk gene 146288239 146290955 . - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0321"; model_cov "1300"; model_pct "24.9"; chr2 rmsk exon 146288239 146288285 314 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "2036"; repStart "-3144"; chr2 rmsk exon 146288340 146288758 1422 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "1661"; repFamily "ERVL"; repLeft "1125"; repStart "-3565"; chr2 rmsk exon 146289027 146289429 1422 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "1238"; repStart "-3614"; chr2 rmsk exon 146290077 146290178 1422 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "1237"; repFamily "ERVL"; repLeft "1140"; repStart "-3989"; chr2 rmsk exon 146290161 146290397 603 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "334"; repFamily "ERVL"; repLeft "87"; repStart "-4892"; chr2 rmsk exon 146290512 146290955 847 - . gene_id "ERV316A3_2q22.3e"; transcript_id "ERV316A3_2q22.3e"; locus "ERV316A3_2q22.3e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0321"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_2q22.3c ### chr2 rmsk gene 146450237 146452643 . - . gene_id "ERVLE_2q22.3c"; transcript_id "ERVLE_2q22.3c"; locus "ERVLE_2q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0542"; model_cov "1881"; model_pct "33.2"; chr2 rmsk exon 146450237 146450367 333 - . gene_id "ERVLE_2q22.3c"; transcript_id "ERVLE_2q22.3c"; locus "ERVLE_2q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0542"; repClass "LTR"; repEnd "3610"; repFamily "ERVL"; repLeft "3466"; repStart "-2057"; chr2 rmsk exon 146450637 146452060 2428 - . gene_id "ERVLE_2q22.3c"; transcript_id "ERVLE_2q22.3c"; locus "ERVLE_2q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0542"; repClass "LTR"; repEnd "3324"; repFamily "ERVL"; repLeft "1816"; repStart "-2343"; chr2 rmsk exon 146452446 146452643 317 - . gene_id "ERVLE_2q22.3c"; transcript_id "ERVLE_2q22.3c"; locus "ERVLE_2q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0542"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "1088"; repStart "-4350"; ### HERVL_2q22.3b ### chr2 rmsk gene 146542872 146549807 . - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0184"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 146542872 146543173 2800 - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0184"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "97"; repStart "-44"; chr2 rmsk exon 146543696 146543791 2800 - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0184"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "1"; repStart "-348"; chr2 rmsk exon 146543792 146549359 43533 - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0184"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 146549360 146549399 2765 - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0184"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chr2 rmsk exon 146549437 146549807 2765 - . gene_id "HERVL_2q22.3b"; transcript_id "HERVL_2q22.3b"; locus "HERVL_2q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0184"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "1"; repStart "-59"; ### MER34B_2q22.3 ### chr2 rmsk gene 146690813 146693930 . - . gene_id "MER34B_2q22.3"; transcript_id "MER34B_2q22.3"; locus "MER34B_2q22.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0045"; model_cov "2823"; model_pct "52.7"; chr2 rmsk exon 146690813 146693574 3917 - . gene_id "MER34B_2q22.3"; transcript_id "MER34B_2q22.3"; locus "MER34B_2q22.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0045"; repClass "LTR"; repEnd "3876"; repFamily "ERV1"; repLeft "1053"; repStart "-1480"; chr2 rmsk exon 146693611 146693930 764 - . gene_id "MER34B_2q22.3"; transcript_id "MER34B_2q22.3"; locus "MER34B_2q22.3"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0045"; repClass "LTR"; repEnd "430"; repFamily "ERV1"; repLeft "47"; repStart "-155"; ### HERVL40_2q22.3a ### chr2 rmsk gene 146698465 146699528 . + . gene_id "HERVL40_2q22.3a"; transcript_id "HERVL40_2q22.3a"; locus "HERVL40_2q22.3a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0045"; model_cov "775"; model_pct "14.0"; chr2 rmsk exon 146698465 146698799 2487 + . gene_id "HERVL40_2q22.3a"; transcript_id "HERVL40_2q22.3a"; locus "HERVL40_2q22.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0045"; repClass "LTR"; repEnd "2877"; repFamily "ERVL"; repLeft "-2653"; repStart "2522"; chr2 rmsk exon 146699106 146699528 2487 + . gene_id "HERVL40_2q22.3a"; transcript_id "HERVL40_2q22.3a"; locus "HERVL40_2q22.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0045"; repClass "LTR"; repEnd "3298"; repFamily "ERVL"; repLeft "-2232"; repStart "2878"; ### HERVL40_2q22.3b ### chr2 rmsk gene 146707425 146709473 . + . gene_id "HERVL40_2q22.3b"; transcript_id "HERVL40_2q22.3b"; locus "HERVL40_2q22.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0046"; model_cov "749"; model_pct "13.5"; chr2 rmsk exon 146707425 146707919 1435 + . gene_id "HERVL40_2q22.3b"; transcript_id "HERVL40_2q22.3b"; locus "HERVL40_2q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0046"; repClass "LTR"; repEnd "3825"; repFamily "ERVL"; repLeft "-1705"; repStart "3302"; chr2 rmsk exon 146708692 146708917 446 + . gene_id "HERVL40_2q22.3b"; transcript_id "HERVL40_2q22.3b"; locus "HERVL40_2q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0046"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5304"; chr2 rmsk exon 146708918 146709473 1014 + . gene_id "HERVL40_2q22.3b"; transcript_id "HERVL40_2q22.3b"; locus "HERVL40_2q22.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0046"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "-56"; ### HERVL_2q22.3c ### chr2 rmsk gene 146774662 146781362 . + . gene_id "HERVL_2q22.3c"; transcript_id "HERVL_2q22.3c"; locus "HERVL_2q22.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0185"; model_cov "5652"; model_pct "100.0"; chr2 rmsk exon 146774662 146775200 2008 + . gene_id "HERVL_2q22.3c"; transcript_id "HERVL_2q22.3c"; locus "HERVL_2q22.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0185"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-11"; repStart "-100"; chr2 rmsk exon 146775208 146780811 30442 + . gene_id "HERVL_2q22.3c"; transcript_id "HERVL_2q22.3c"; locus "HERVL_2q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0185"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr2 rmsk exon 146780813 146781362 2062 + . gene_id "HERVL_2q22.3c"; transcript_id "HERVL_2q22.3c"; locus "HERVL_2q22.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0185"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVW_2q22.3 ### chr2 rmsk gene 146998541 147001123 . + . gene_id "HERVW_2q22.3"; transcript_id "HERVW_2q22.3"; locus "HERVW_2q22.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0045"; model_cov "2215"; model_pct "25.7"; chr2 rmsk exon 146998541 146998885 2652 + . gene_id "HERVW_2q22.3"; transcript_id "HERVW_2q22.3"; locus "HERVW_2q22.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0045"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "414"; chr2 rmsk exon 146998886 146999708 7865 + . gene_id "HERVW_2q22.3"; transcript_id "HERVW_2q22.3"; locus "HERVW_2q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0045"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "-7772"; repStart "1"; chr2 rmsk exon 146999755 147000000 7865 + . gene_id "HERVW_2q22.3"; transcript_id "HERVW_2q22.3"; locus "HERVW_2q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0045"; repClass "LTR"; repEnd "1106"; repFamily "ERV1"; repLeft "-7520"; repStart "855"; chr2 rmsk exon 147000001 147001123 9081 + . gene_id "HERVW_2q22.3"; transcript_id "HERVW_2q22.3"; locus "HERVW_2q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0045"; repClass "LTR"; repEnd "2219"; repFamily "ERV1"; repLeft "-6407"; repStart "1108"; ### MER41_2q22.3 ### chr2 rmsk gene 147216551 147221536 . - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0063"; model_cov "3426"; model_pct "57.6"; chr2 rmsk exon 147216551 147217093 3882 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0063"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 147217096 147218426 9298 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0063"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "4590"; repStart "-4"; chr2 rmsk exon 147218424 147219036 3174 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0063"; repClass "LTR"; repEnd "4404"; repFamily "ERV1"; repLeft "3786"; repStart "-1542"; chr2 rmsk exon 147219023 147219636 3086 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0063"; repClass "LTR"; repEnd "1458"; repFamily "ERV1"; repLeft "1059"; repStart "-4488"; chr2 rmsk exon 147219953 147220985 5208 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0063"; repClass "LTR"; repEnd "1058"; repFamily "ERV1"; repLeft "1"; repStart "-4888"; chr2 rmsk exon 147220986 147221536 4041 - . gene_id "MER41_2q22.3"; transcript_id "MER41_2q22.3"; locus "MER41_2q22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0063"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_2q22.3b ### chr2 rmsk gene 147277063 147277739 . - . gene_id "ERVLB4_2q22.3b"; transcript_id "ERVLB4_2q22.3b"; locus "ERVLB4_2q22.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0237"; model_cov "664"; model_pct "11.6"; chr2 rmsk exon 147277063 147277343 709 - . gene_id "ERVLB4_2q22.3b"; transcript_id "ERVLB4_2q22.3b"; locus "ERVLB4_2q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0237"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "5042"; repStart "-379"; chr2 rmsk exon 147277390 147277739 741 - . gene_id "ERVLB4_2q22.3b"; transcript_id "ERVLB4_2q22.3b"; locus "ERVLB4_2q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0237"; repClass "LTR"; repEnd "4524"; repFamily "ERVL"; repLeft "4153"; repStart "-1190"; ### HERV9_2q22.3 ### chr2 rmsk gene 147311309 147319336 . + . gene_id "HERV9_2q22.3"; transcript_id "HERV9_2q22.3"; locus "HERV9_2q22.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0024"; model_cov "6899"; model_pct "81.8"; chr2 rmsk exon 147311309 147311931 4756 + . gene_id "HERV9_2q22.3"; transcript_id "HERV9_2q22.3"; locus "HERV9_2q22.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0024"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 147311932 147317024 33261 + . gene_id "HERV9_2q22.3"; transcript_id "HERV9_2q22.3"; locus "HERV9_2q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0024"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-3220"; repStart "1"; chr2 rmsk exon 147317023 147318679 13019 + . gene_id "HERV9_2q22.3"; transcript_id "HERV9_2q22.3"; locus "HERV9_2q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0024"; repClass "LTR"; repEnd "8406"; repFamily "ERV1"; repLeft "-30"; repStart "6722"; chr2 rmsk exon 147318710 147319336 4636 + . gene_id "HERV9_2q22.3"; transcript_id "HERV9_2q22.3"; locus "HERV9_2q22.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0024"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_2q23.1 ### chr2 rmsk gene 148253645 148259882 . - . gene_id "HERVL18_2q23.1"; transcript_id "HERVL18_2q23.1"; locus "HERVL18_2q23.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0026"; model_cov "5531"; model_pct "91.5"; chr2 rmsk exon 148253645 148253983 2497 - . gene_id "HERVL18_2q23.1"; transcript_id "HERVL18_2q23.1"; locus "HERVL18_2q23.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0026"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr2 rmsk exon 148253986 148259246 34148 - . gene_id "HERVL18_2q23.1"; transcript_id "HERVL18_2q23.1"; locus "HERVL18_2q23.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0026"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "794"; repStart "0"; chr2 rmsk exon 148259250 148259528 1646 - . gene_id "HERVL18_2q23.1"; transcript_id "HERVL18_2q23.1"; locus "HERVL18_2q23.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0026"; repClass "LTR"; repEnd "288"; repFamily "ERVL"; repLeft "10"; repStart "-5759"; chr2 rmsk exon 148259546 148259882 2290 - . gene_id "HERVL18_2q23.1"; transcript_id "HERVL18_2q23.1"; locus "HERVL18_2q23.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0026"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HML1_2q23.2 ### chr2 rmsk gene 149321871 149324851 . + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0012"; model_cov "2734"; model_pct "44.8"; chr2 rmsk exon 149321871 149323312 12027 + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0012"; repClass "LTR"; repEnd "3283"; repFamily "ERVK"; repLeft "-2813"; repStart "1827"; chr2 rmsk exon 149323309 149324144 6616 + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0012"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4713"; chr2 rmsk exon 149324118 149324331 1663 + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0012"; repClass "LTR"; repEnd "5929"; repFamily "ERVK"; repLeft "-167"; repStart "5656"; chr2 rmsk exon 149324389 149324517 1663 + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0012"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5930"; chr2 rmsk exon 149324521 149324851 2720 + . gene_id "HML1_2q23.2"; transcript_id "HML1_2q23.2"; locus "HML1_2q23.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0012"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_2q23.2 ### chr2 rmsk gene 149415508 149417296 . - . gene_id "ERV316A3_2q23.2"; transcript_id "ERV316A3_2q23.2"; locus "ERV316A3_2q23.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0324"; model_cov "1258"; model_pct "24.1"; chr2 rmsk exon 149415508 149415670 533 - . gene_id "ERV316A3_2q23.2"; transcript_id "ERV316A3_2q23.2"; locus "ERV316A3_2q23.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0324"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "260"; repStart "-65"; chr2 rmsk exon 149415982 149416037 533 - . gene_id "ERV316A3_2q23.2"; transcript_id "ERV316A3_2q23.2"; locus "ERV316A3_2q23.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0324"; repClass "LTR"; repEnd "259"; repFamily "ERVL"; repLeft "203"; repStart "-203"; chr2 rmsk exon 149416042 149417049 3044 - . gene_id "ERV316A3_2q23.2"; transcript_id "ERV316A3_2q23.2"; locus "ERV316A3_2q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0324"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "4193"; repStart "-9"; chr2 rmsk exon 149417064 149417296 512 - . gene_id "ERV316A3_2q23.2"; transcript_id "ERV316A3_2q23.2"; locus "ERV316A3_2q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0324"; repClass "LTR"; repEnd "2916"; repFamily "ERVL"; repLeft "2682"; repStart "-2310"; ### HERVH_2q23.3a ### chr2 rmsk gene 150112717 150118564 . + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0166"; model_cov "5117"; model_pct "66.3"; chr2 rmsk exon 150112717 150113169 3389 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 150113172 150116023 14159 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 150116003 150116854 5588 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "-3719"; repStart "3140"; chr2 rmsk exon 150116856 150117519 4408 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 150117521 150117736 1254 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 150117737 150118109 2280 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 150118110 150118564 3424 + . gene_id "HERVH_2q23.3a"; transcript_id "HERVH_2q23.3a"; locus "HERVH_2q23.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0166"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q23.3a ### chr2 rmsk gene 150237847 150242265 . - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0325"; model_cov "3269"; model_pct "62.6"; chr2 rmsk exon 150237847 150239843 4215 - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0325"; repClass "LTR"; repEnd "4655"; repFamily "ERVL"; repLeft "2679"; repStart "-571"; chr2 rmsk exon 150239856 150240065 1087 - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0325"; repClass "LTR"; repEnd "2433"; repFamily "ERVL"; repLeft "2231"; repStart "-2793"; chr2 rmsk exon 150240091 150240155 1087 - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0325"; repClass "LTR"; repEnd "2230"; repFamily "ERVL"; repLeft "2176"; repStart "-2996"; chr2 rmsk exon 150240457 150240859 1087 - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0325"; repClass "LTR"; repEnd "2175"; repFamily "ERVL"; repLeft "1750"; repStart "-3051"; chr2 rmsk exon 150241743 150242265 881 - . gene_id "ERV316A3_2q23.3a"; transcript_id "ERV316A3_2q23.3a"; locus "ERV316A3_2q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0325"; repClass "LTR"; repEnd "2090"; repFamily "ERVL"; repLeft "1478"; repStart "-3136"; ### ERV316A3_2q23.3b ### chr2 rmsk gene 150343432 150345370 . - . gene_id "ERV316A3_2q23.3b"; transcript_id "ERV316A3_2q23.3b"; locus "ERV316A3_2q23.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0326"; model_cov "1371"; model_pct "26.2"; chr2 rmsk exon 150343432 150344763 2459 - . gene_id "ERV316A3_2q23.3b"; transcript_id "ERV316A3_2q23.3b"; locus "ERV316A3_2q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0326"; repClass "LTR"; repEnd "1644"; repFamily "ERVL"; repLeft "273"; repStart "-3582"; chr2 rmsk exon 150344989 150345370 874 - . gene_id "ERV316A3_2q23.3b"; transcript_id "ERV316A3_2q23.3b"; locus "ERV316A3_2q23.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0326"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "17"; repStart "-2"; ### HERVL_2q23.3 ### chr2 rmsk gene 150829936 150836450 . - . gene_id "HERVL_2q23.3"; transcript_id "HERVL_2q23.3"; locus "HERVL_2q23.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0186"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 150829936 150830378 3070 - . gene_id "HERVL_2q23.3"; transcript_id "HERVL_2q23.3"; locus "HERVL_2q23.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0186"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 150830379 150836013 29909 - . gene_id "HERVL_2q23.3"; transcript_id "HERVL_2q23.3"; locus "HERVL_2q23.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0186"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 150836014 150836450 3021 - . gene_id "HERVL_2q23.3"; transcript_id "HERVL_2q23.3"; locus "HERVL_2q23.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0186"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_2q23.3d ### chr2 rmsk gene 150953417 150962930 . + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_0167"; model_cov "6206"; model_pct "80.5"; chr2 rmsk exon 150953417 150953740 1731 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 150953741 150956460 13314 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 150956460 150956910 2679 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "3591"; repFamily "ERV1"; repLeft "-4122"; repStart "3140"; chr2 rmsk exon 150956910 150959181 13902 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "3811"; chr2 rmsk exon 150959181 150959737 3902 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr2 rmsk exon 150959738 150960103 2211 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 150960226 150962930 15495 + . gene_id "HERVH_2q23.3d"; transcript_id "HERVH_2q23.3d"; locus "HERVH_2q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0167"; repClass "LTR"; repEnd "4138"; repFamily "ERV1"; repLeft "-3575"; repStart "1530"; ### LTR57_2q23.3 ### chr2 rmsk gene 151247249 151248740 . - . gene_id "LTR57_2q23.3"; transcript_id "LTR57_2q23.3"; locus "LTR57_2q23.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0028"; model_cov "935"; model_pct "17.5"; chr2 rmsk exon 151247249 151247562 1843 - . gene_id "LTR57_2q23.3"; transcript_id "LTR57_2q23.3"; locus "LTR57_2q23.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0028"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "693"; repStart "-3763"; chr2 rmsk exon 151248689 151248740 298 - . gene_id "LTR57_2q23.3"; transcript_id "LTR57_2q23.3"; locus "LTR57_2q23.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0028"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "303"; repStart "-4992"; ### HERVH_2q23.3b ### chr2 rmsk gene 151309068 151315223 . + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0169"; model_cov "5172"; model_pct "67.1"; chr2 rmsk exon 151309068 151309482 3144 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 151309483 151309948 2808 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr2 rmsk exon 151310007 151312257 13516 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "800"; chr2 rmsk exon 151312237 151313972 5566 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "-2879"; repStart "3140"; chr2 rmsk exon 151314001 151314269 1553 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr2 rmsk exon 151314263 151314798 2853 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr2 rmsk exon 151314799 151315223 3389 + . gene_id "HERVH_2q23.3b"; transcript_id "HERVH_2q23.3b"; locus "HERVH_2q23.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0169"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_2q23.3a ### chr2 rmsk gene 152178170 152181446 . - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0030"; model_cov "2768"; model_pct "46.0"; chr2 rmsk exon 152178170 152178756 4037 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "5157"; repFamily "ERVK"; repLeft "4582"; repStart "-864"; chr2 rmsk exon 152178743 152178971 1669 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr2 rmsk exon 152178972 152180276 10549 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1494"; repStart "-3223"; chr2 rmsk exon 152180287 152180339 349 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "1334"; repFamily "ERVK"; repLeft "1282"; repStart "-4687"; chr2 rmsk exon 152180338 152180935 4287 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "-5413"; chr2 rmsk exon 152180936 152181446 4234 - . gene_id "HML3_2q23.3a"; transcript_id "HML3_2q23.3a"; locus "HML3_2q23.3a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0030"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_2q23.3b ### chr2 rmsk gene 152273628 152278421 . - . gene_id "HML3_2q23.3b"; transcript_id "HML3_2q23.3b"; locus "HML3_2q23.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0031"; model_cov "4434"; model_pct "73.6"; chr2 rmsk exon 152273628 152274141 4298 - . gene_id "HML3_2q23.3b"; transcript_id "HML3_2q23.3b"; locus "HML3_2q23.3b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0031"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 152274142 152277893 27569 - . gene_id "HML3_2q23.3b"; transcript_id "HML3_2q23.3b"; locus "HML3_2q23.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0031"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "2149"; repStart "0"; chr2 rmsk exon 152277893 152278421 8250 - . gene_id "HML3_2q23.3b"; transcript_id "HML3_2q23.3b"; locus "HML3_2q23.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0031"; repClass "LTR"; repEnd "1373"; repFamily "ERVK"; repLeft "811"; repStart "-4648"; ### HML3_2q23.3c ### chr2 rmsk gene 152278491 152279762 . - . gene_id "HML3_2q23.3c"; transcript_id "HML3_2q23.3c"; locus "HML3_2q23.3c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0032"; model_cov "809"; model_pct "13.4"; chr2 rmsk exon 152278491 152279249 8250 - . gene_id "HML3_2q23.3c"; transcript_id "HML3_2q23.3c"; locus "HML3_2q23.3c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0032"; repClass "LTR"; repEnd "1373"; repFamily "ERVK"; repLeft "564"; repStart "-4648"; chr2 rmsk exon 152279250 152279762 4332 - . gene_id "HML3_2q23.3c"; transcript_id "HML3_2q23.3c"; locus "HML3_2q23.3c"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0032"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_2q23.3 ### chr2 rmsk gene 152701339 152709137 . + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0022"; model_cov "6794"; model_pct "87.8"; chr2 rmsk exon 152701339 152701696 1721 + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0022"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "184"; chr2 rmsk exon 152702069 152702204 483 + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0022"; repClass "LTR"; repEnd "-442"; repFamily "ERV1"; repLeft "-8179"; repStart "-595"; chr2 rmsk exon 152702248 152708261 39267 + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0022"; repClass "LTR"; repEnd "6462"; repFamily "ERV1"; repLeft "-1275"; repStart "397"; chr2 rmsk exon 152708267 152708834 2879 + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0022"; repClass "LTR"; repEnd "7653"; repFamily "ERV1"; repLeft "-84"; repStart "7077"; chr2 rmsk exon 152708835 152709137 1330 + . gene_id "HERVIP10F_2q23.3"; transcript_id "HERVIP10F_2q23.3"; locus "HERVIP10F_2q23.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0022"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "239"; ### ERVLE_2q23.3a ### chr2 rmsk gene 152764693 152766715 . - . gene_id "ERVLE_2q23.3a"; transcript_id "ERVLE_2q23.3a"; locus "ERVLE_2q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0548"; model_cov "1237"; model_pct "21.8"; chr2 rmsk exon 152764693 152764843 403 - . gene_id "ERVLE_2q23.3a"; transcript_id "ERVLE_2q23.3a"; locus "ERVLE_2q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0548"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "4659"; repStart "-845"; chr2 rmsk exon 152765287 152765530 363 - . gene_id "ERVLE_2q23.3a"; transcript_id "ERVLE_2q23.3a"; locus "ERVLE_2q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0548"; repClass "LTR"; repEnd "4481"; repFamily "ERVL"; repLeft "4204"; repStart "-1186"; chr2 rmsk exon 152765683 152766244 1295 - . gene_id "ERVLE_2q23.3a"; transcript_id "ERVLE_2q23.3a"; locus "ERVLE_2q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0548"; repClass "LTR"; repEnd "4005"; repFamily "ERVL"; repLeft "3425"; repStart "-1662"; chr2 rmsk exon 152766521 152766715 370 - . gene_id "ERVLE_2q23.3a"; transcript_id "ERVLE_2q23.3a"; locus "ERVLE_2q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0548"; repClass "LTR"; repEnd "3358"; repFamily "ERVL"; repLeft "3141"; repStart "-2309"; ### ERVLB4_2q23.3 ### chr2 rmsk gene 152780807 152781886 . - . gene_id "ERVLB4_2q23.3"; transcript_id "ERVLB4_2q23.3"; locus "ERVLB4_2q23.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0238"; model_cov "1151"; model_pct "20.1"; chr2 rmsk exon 152780807 152781085 1074 - . gene_id "ERVLB4_2q23.3"; transcript_id "ERVLB4_2q23.3"; locus "ERVLB4_2q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0238"; repClass "LTR"; repEnd "5549"; repFamily "ERVL"; repLeft "5229"; repStart "-165"; chr2 rmsk exon 152781080 152781637 3276 - . gene_id "ERVLB4_2q23.3"; transcript_id "ERVLB4_2q23.3"; locus "ERVLB4_2q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0238"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "4009"; repStart "-1139"; chr2 rmsk exon 152781631 152781886 1285 - . gene_id "ERVLB4_2q23.3"; transcript_id "ERVLB4_2q23.3"; locus "ERVLB4_2q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0238"; repClass "LTR"; repEnd "1309"; repFamily "ERVL"; repLeft "1044"; repStart "-4405"; ### HERV4_2q23.3 ### chr2 rmsk gene 152962529 152970633 . - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0017"; model_cov "7540"; model_pct "100.0"; chr2 rmsk exon 152962529 152962817 1889 - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0017"; repClass "LTR"; repEnd "289"; repFamily "ERV1"; repLeft "1"; repStart "-345"; chr2 rmsk exon 152962819 152964253 2105 - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0017"; repClass "LTR"; repEnd "6327"; repFamily "ERV1"; repLeft "4366"; repStart "-212"; chr2 rmsk exon 152964709 152968178 24252 - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0017"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "2815"; repStart "-275"; chr2 rmsk exon 152968176 152970224 11985 - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0017"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "617"; repStart "-3886"; chr2 rmsk exon 152970471 152970633 11985 - . gene_id "HERV4_2q23.3"; transcript_id "HERV4_2q23.3"; locus "HERV4_2q23.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0017"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "522"; repStart "-5923"; ### HUERSP1_2q23.3 ### chr2 rmsk gene 153240272 153244351 . + . gene_id "HUERSP1_2q23.3"; transcript_id "HUERSP1_2q23.3"; locus "HUERSP1_2q23.3"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0029"; model_cov "3854"; model_pct "61.5"; chr2 rmsk exon 153240272 153240414 994 + . gene_id "HUERSP1_2q23.3"; transcript_id "HUERSP1_2q23.3"; locus "HUERSP1_2q23.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0029"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "549"; chr2 rmsk exon 153240415 153243334 13838 + . gene_id "HUERSP1_2q23.3"; transcript_id "HUERSP1_2q23.3"; locus "HUERSP1_2q23.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0029"; repClass "LTR"; repEnd "2796"; repFamily "ERV1"; repLeft "-3467"; repStart "1"; chr2 rmsk exon 153243328 153244351 5369 + . gene_id "HUERSP1_2q23.3"; transcript_id "HUERSP1_2q23.3"; locus "HUERSP1_2q23.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0029"; repClass "LTR"; repEnd "4283"; repFamily "ERV1"; repLeft "-1980"; repStart "3224"; ### MER41_2q23.3 ### chr2 rmsk gene 153257554 153258263 . + . gene_id "MER41_2q23.3"; transcript_id "MER41_2q23.3"; locus "MER41_2q23.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0064"; model_cov "729"; model_pct "12.3"; chr2 rmsk exon 153257554 153258263 4492 + . gene_id "MER41_2q23.3"; transcript_id "MER41_2q23.3"; locus "MER41_2q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0064"; repClass "LTR"; repEnd "5303"; repFamily "ERV1"; repLeft "-643"; repStart "4574"; ### MER61_2q23.3 ### chr2 rmsk gene 153500669 153501301 . - . gene_id "MER61_2q23.3"; transcript_id "MER61_2q23.3"; locus "MER61_2q23.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0057"; model_cov "538"; model_pct "10.3"; chr2 rmsk exon 153500669 153501301 2686 - . gene_id "MER61_2q23.3"; transcript_id "MER61_2q23.3"; locus "MER61_2q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0057"; repClass "LTR"; repEnd "2764"; repFamily "ERV1"; repLeft "2226"; repStart "-2453"; ### HERVH_2q23.3c ### chr2 rmsk gene 153534536 153536035 . - . gene_id "HERVH_2q23.3c"; transcript_id "HERVH_2q23.3c"; locus "HERVH_2q23.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0170"; model_cov "1092"; model_pct "14.2"; chr2 rmsk exon 153534536 153534949 2938 - . gene_id "HERVH_2q23.3c"; transcript_id "HERVH_2q23.3c"; locus "HERVH_2q23.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0170"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr2 rmsk exon 153534950 153535330 2296 - . gene_id "HERVH_2q23.3c"; transcript_id "HERVH_2q23.3c"; locus "HERVH_2q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0170"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 153535331 153535548 1353 - . gene_id "HERVH_2q23.3c"; transcript_id "HERVH_2q23.3c"; locus "HERVH_2q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0170"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 153535550 153536035 2835 - . gene_id "HERVH_2q23.3c"; transcript_id "HERVH_2q23.3c"; locus "HERVH_2q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0170"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4665"; repStart "-2564"; ### ERVLE_2q23.3b ### chr2 rmsk gene 153690517 153693315 . + . gene_id "ERVLE_2q23.3b"; transcript_id "ERVLE_2q23.3b"; locus "ERVLE_2q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0551"; model_cov "756"; model_pct "13.3"; chr2 rmsk exon 153690517 153690669 334 + . gene_id "ERVLE_2q23.3b"; transcript_id "ERVLE_2q23.3b"; locus "ERVLE_2q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0551"; repClass "LTR"; repEnd "2083"; repFamily "ERVL"; repLeft "-3584"; repStart "1926"; chr2 rmsk exon 153692361 153692703 1103 + . gene_id "ERVLE_2q23.3b"; transcript_id "ERVLE_2q23.3b"; locus "ERVLE_2q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0551"; repClass "LTR"; repEnd "2568"; repFamily "ERVL"; repLeft "-3099"; repStart "2200"; chr2 rmsk exon 153693084 153693315 438 + . gene_id "ERVLE_2q23.3b"; transcript_id "ERVLE_2q23.3b"; locus "ERVLE_2q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0551"; repClass "LTR"; repEnd "3554"; repFamily "ERVL"; repLeft "-2113"; repStart "3323"; ### HERVL40_2q23.3 ### chr2 rmsk gene 153934404 153936604 . - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0047"; model_cov "1425"; model_pct "25.8"; chr2 rmsk exon 153934404 153934553 495 - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0047"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "311"; repStart "-9"; chr2 rmsk exon 153934791 153934916 456 - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0047"; repClass "LTR"; repEnd "138"; repFamily "ERVL"; repLeft "3"; repStart "-327"; chr2 rmsk exon 153934919 153936085 3807 - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0047"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "4362"; repStart "0"; chr2 rmsk exon 153936349 153936536 877 - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0047"; repClass "LTR"; repEnd "3911"; repFamily "ERVL"; repLeft "3720"; repStart "-1619"; chr2 rmsk exon 153936538 153936604 250 - . gene_id "HERVL40_2q23.3"; transcript_id "HERVL40_2q23.3"; locus "HERVL40_2q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0047"; repClass "LTR"; repEnd "1366"; repFamily "ERVL"; repLeft "1300"; repStart "-4164"; ### HERVL_2q24.1 ### chr2 rmsk gene 154110239 154117302 . - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0187"; model_cov "5652"; model_pct "100.0"; chr2 rmsk exon 154110239 154110336 2927 - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0187"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr2 rmsk exon 154110415 154110795 2927 - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0187"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; chr2 rmsk exon 154110796 154115310 42715 - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0187"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1124"; repStart "0"; chr2 rmsk exon 154115721 154116850 42715 - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0187"; repClass "LTR"; repEnd "1123"; repFamily "ERVL"; repLeft "1"; repStart "-4531"; chr2 rmsk exon 154116851 154117302 3078 - . gene_id "HERVL_2q24.1"; transcript_id "HERVL_2q24.1"; locus "HERVL_2q24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0187"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_2q24.1a ### chr2 rmsk gene 154469035 154471004 . + . gene_id "ERVLE_2q24.1a"; transcript_id "ERVLE_2q24.1a"; locus "ERVLE_2q24.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0554"; model_cov "1447"; model_pct "25.5"; chr2 rmsk exon 154469035 154470401 2314 + . gene_id "ERVLE_2q24.1a"; transcript_id "ERVLE_2q24.1a"; locus "ERVLE_2q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0554"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4220"; chr2 rmsk exon 154470402 154471004 917 + . gene_id "ERVLE_2q24.1a"; transcript_id "ERVLE_2q24.1a"; locus "ERVLE_2q24.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0554"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### MER101_2q24.1 ### chr2 rmsk gene 154528502 154529699 . + . gene_id "MER101_2q24.1"; transcript_id "MER101_2q24.1"; locus "MER101_2q24.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0071"; model_cov "1210"; model_pct "18.2"; chr2 rmsk exon 154528502 154529608 4314 + . gene_id "MER101_2q24.1"; transcript_id "MER101_2q24.1"; locus "MER101_2q24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0071"; repClass "LTR"; repEnd "3647"; repFamily "ERV1"; repLeft "-2992"; repStart "2512"; chr2 rmsk exon 154529625 154529699 364 + . gene_id "MER101_2q24.1"; transcript_id "MER101_2q24.1"; locus "MER101_2q24.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0071"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-2704"; repStart "3860"; ### HERVS71_2q24.1 ### chr2 rmsk gene 154576160 154578301 . - . gene_id "HERVS71_2q24.1"; transcript_id "HERVS71_2q24.1"; locus "HERVS71_2q24.1"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0005"; model_cov "1539"; model_pct "17.1"; chr2 rmsk exon 154576160 154577182 7382 - . gene_id "HERVS71_2q24.1"; transcript_id "HERVS71_2q24.1"; locus "HERVS71_2q24.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0005"; repClass "LTR"; repEnd "1495"; repFamily "ERV1"; repLeft "453"; repStart "-7483"; chr2 rmsk exon 154577255 154577751 3270 - . gene_id "HERVS71_2q24.1"; transcript_id "HERVS71_2q24.1"; locus "HERVS71_2q24.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0005"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "4"; repStart "-8477"; chr2 rmsk exon 154577755 154578301 4128 - . gene_id "HERVS71_2q24.1"; transcript_id "HERVS71_2q24.1"; locus "HERVS71_2q24.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0005"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_2q24.1a ### chr2 rmsk gene 154582639 154587189 . - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0171"; model_cov "3798"; model_pct "49.2"; chr2 rmsk exon 154582639 154583047 2561 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 154583048 154583424 2415 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 154583425 154583473 1251 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5767"; repStart "-1894"; chr2 rmsk exon 154583771 154583943 1251 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "5766"; repFamily "ERV1"; repLeft "5598"; repStart "-1947"; chr2 rmsk exon 154583941 154585190 6294 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3962"; repStart "-2564"; chr2 rmsk exon 154585184 154585429 1566 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3492"; repStart "-3977"; chr2 rmsk exon 154585420 154585568 843 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 154585548 154587189 10721 - . gene_id "HERVH_2q24.1a"; transcript_id "HERVH_2q24.1a"; locus "HERVH_2q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0171"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1387"; repStart "-4718"; ### HERVL40_2q24.1 ### chr2 rmsk gene 154806119 154809098 . - . gene_id "HERVL40_2q24.1"; transcript_id "HERVL40_2q24.1"; locus "HERVL40_2q24.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0048"; model_cov "1042"; model_pct "18.8"; chr2 rmsk exon 154806119 154806405 1210 - . gene_id "HERVL40_2q24.1"; transcript_id "HERVL40_2q24.1"; locus "HERVL40_2q24.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0048"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "235"; repStart "-2"; chr2 rmsk exon 154806692 154806809 523 - . gene_id "HERVL40_2q24.1"; transcript_id "HERVL40_2q24.1"; locus "HERVL40_2q24.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0048"; repClass "LTR"; repEnd "5390"; repFamily "ERVL"; repLeft "5278"; repStart "-140"; chr2 rmsk exon 154807855 154808082 2991 - . gene_id "HERVL40_2q24.1"; transcript_id "HERVL40_2q24.1"; locus "HERVL40_2q24.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0048"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "4439"; repStart "-866"; chr2 rmsk exon 154808380 154809098 2991 - . gene_id "HERVL40_2q24.1"; transcript_id "HERVL40_2q24.1"; locus "HERVL40_2q24.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0048"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "3733"; repStart "-1092"; ### HERVH_2q24.1b ### chr2 rmsk gene 154867229 154874560 . + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0172"; model_cov "6419"; model_pct "83.2"; chr2 rmsk exon 154867229 154867724 2926 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 154867727 154870726 20204 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr2 rmsk exon 154870713 154870860 862 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 154870851 154871354 3315 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 154871357 154872017 4232 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 154872015 154874111 16219 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5597"; chr2 rmsk exon 154874112 154874560 3309 + . gene_id "HERVH_2q24.1b"; transcript_id "HERVH_2q24.1b"; locus "HERVH_2q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0172"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q24.1a ### chr2 rmsk gene 155009030 155011170 . - . gene_id "ERV316A3_2q24.1a"; transcript_id "ERV316A3_2q24.1a"; locus "ERV316A3_2q24.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0328"; model_cov "2004"; model_pct "38.3"; chr2 rmsk exon 155009030 155010885 4593 - . gene_id "ERV316A3_2q24.1a"; transcript_id "ERV316A3_2q24.1a"; locus "ERV316A3_2q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0328"; repClass "LTR"; repEnd "2886"; repFamily "ERVL"; repLeft "1029"; repStart "-2340"; chr2 rmsk exon 155011025 155011170 578 - . gene_id "ERV316A3_2q24.1a"; transcript_id "ERV316A3_2q24.1a"; locus "ERV316A3_2q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0328"; repClass "LTR"; repEnd "931"; repFamily "ERVL"; repLeft "784"; repStart "-4295"; ### ERVLB4_2q24.1a ### chr2 rmsk gene 155060998 155063399 . - . gene_id "ERVLB4_2q24.1a"; transcript_id "ERVLB4_2q24.1a"; locus "ERVLB4_2q24.1a"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0239"; model_cov "1929"; model_pct "33.8"; chr2 rmsk exon 155060998 155061451 1673 - . gene_id "ERVLB4_2q24.1a"; transcript_id "ERVLB4_2q24.1a"; locus "ERVLB4_2q24.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0239"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 155061452 155062412 4291 - . gene_id "ERVLB4_2q24.1a"; transcript_id "ERVLB4_2q24.1a"; locus "ERVLB4_2q24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0239"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4609"; repStart "0"; chr2 rmsk exon 155062413 155062608 534 - . gene_id "ERVLB4_2q24.1a"; transcript_id "ERVLB4_2q24.1a"; locus "ERVLB4_2q24.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0239"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "139"; repStart "-200"; chr2 rmsk exon 155062609 155063399 4664 - . gene_id "ERVLB4_2q24.1a"; transcript_id "ERVLB4_2q24.1a"; locus "ERVLB4_2q24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0239"; repClass "LTR"; repEnd "4545"; repFamily "ERVL"; repLeft "3721"; repStart "-1169"; ### ERVLB4_2q24.1b ### chr2 rmsk gene 155069277 155073326 . - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0240"; model_cov "3213"; model_pct "56.2"; chr2 rmsk exon 155069277 155070943 11229 - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0240"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "2173"; repStart "-1805"; chr2 rmsk exon 155071465 155071922 11229 - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0240"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1713"; repStart "-3542"; chr2 rmsk exon 155072317 155072499 1175 - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0240"; repClass "LTR"; repEnd "1719"; repFamily "ERVL"; repLeft "1538"; repStart "-3995"; chr2 rmsk exon 155072499 155073046 2835 - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0240"; repClass "LTR"; repEnd "1202"; repFamily "ERVL"; repLeft "657"; repStart "-4512"; chr2 rmsk exon 155073045 155073326 1309 - . gene_id "ERVLB4_2q24.1b"; transcript_id "ERVLB4_2q24.1b"; locus "ERVLB4_2q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0240"; repClass "LTR"; repEnd "730"; repFamily "ERVL"; repLeft "438"; repStart "-4984"; ### ERV316A3_2q24.1b ### chr2 rmsk gene 155299164 155301479 . - . gene_id "ERV316A3_2q24.1b"; transcript_id "ERV316A3_2q24.1b"; locus "ERV316A3_2q24.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0329"; model_cov "2040"; model_pct "39.0"; chr2 rmsk exon 155299164 155300581 1993 - . gene_id "ERV316A3_2q24.1b"; transcript_id "ERV316A3_2q24.1b"; locus "ERV316A3_2q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0329"; repClass "LTR"; repEnd "4038"; repFamily "ERVL"; repLeft "2517"; repStart "-1188"; chr2 rmsk exon 155300875 155300923 1926 - . gene_id "ERV316A3_2q24.1b"; transcript_id "ERV316A3_2q24.1b"; locus "ERV316A3_2q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0329"; repClass "LTR"; repEnd "2188"; repFamily "ERVL"; repLeft "2159"; repStart "-3038"; chr2 rmsk exon 155300968 155301479 1926 - . gene_id "ERV316A3_2q24.1b"; transcript_id "ERV316A3_2q24.1b"; locus "ERV316A3_2q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0329"; repClass "LTR"; repEnd "2158"; repFamily "ERVL"; repLeft "1668"; repStart "-3068"; ### ERV316A3_2q24.1c ### chr2 rmsk gene 155334536 155336116 . + . gene_id "ERV316A3_2q24.1c"; transcript_id "ERV316A3_2q24.1c"; locus "ERV316A3_2q24.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0330"; model_cov "1177"; model_pct "22.5"; chr2 rmsk exon 155334536 155334971 1122 + . gene_id "ERV316A3_2q24.1c"; transcript_id "ERV316A3_2q24.1c"; locus "ERV316A3_2q24.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0330"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 155334981 155336116 1518 + . gene_id "ERV316A3_2q24.1c"; transcript_id "ERV316A3_2q24.1c"; locus "ERV316A3_2q24.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0330"; repClass "LTR"; repEnd "1408"; repFamily "ERVL"; repLeft "-3818"; repStart "231"; ### ERV316A3_2q24.1d ### chr2 rmsk gene 155336148 155341190 . + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0331"; model_cov "3389"; model_pct "64.8"; chr2 rmsk exon 155336148 155336282 297 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "1368"; repFamily "ERVL"; repLeft "-3858"; repStart "1230"; chr2 rmsk exon 155336307 155336859 3566 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "-3237"; repStart "1459"; chr2 rmsk exon 155337160 155338985 3566 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "-1404"; repStart "1990"; chr2 rmsk exon 155338992 155339688 695 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "4567"; repFamily "ERVL"; repLeft "-659"; repStart "3874"; chr2 rmsk exon 155340125 155340316 429 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "5170"; repFamily "ERVL"; repLeft "-56"; repStart "4974"; chr2 rmsk exon 155340838 155341190 585 + . gene_id "ERV316A3_2q24.1d"; transcript_id "ERV316A3_2q24.1d"; locus "ERV316A3_2q24.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0331"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-35"; repStart "50"; ### ERVLE_2q24.1b ### chr2 rmsk gene 155390022 155391669 . - . gene_id "ERVLE_2q24.1b"; transcript_id "ERVLE_2q24.1b"; locus "ERVLE_2q24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0555"; model_cov "721"; model_pct "12.7"; chr2 rmsk exon 155390022 155390321 545 - . gene_id "ERVLE_2q24.1b"; transcript_id "ERVLE_2q24.1b"; locus "ERVLE_2q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0555"; repClass "LTR"; repEnd "2197"; repFamily "ERVL"; repLeft "1888"; repStart "-3470"; chr2 rmsk exon 155390715 155390906 436 - . gene_id "ERVLE_2q24.1b"; transcript_id "ERVLE_2q24.1b"; locus "ERVLE_2q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0555"; repClass "LTR"; repEnd "1196"; repFamily "ERVL"; repLeft "997"; repStart "-4471"; chr2 rmsk exon 155391457 155391669 401 - . gene_id "ERVLE_2q24.1b"; transcript_id "ERVLE_2q24.1b"; locus "ERVLE_2q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0555"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "336"; repStart "-5118"; ### ERV316A3_2q24.1e ### chr2 rmsk gene 155588151 155589074 . - . gene_id "ERV316A3_2q24.1e"; transcript_id "ERV316A3_2q24.1e"; locus "ERV316A3_2q24.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0332"; model_cov "906"; model_pct "17.3"; chr2 rmsk exon 155588151 155588730 670 - . gene_id "ERV316A3_2q24.1e"; transcript_id "ERV316A3_2q24.1e"; locus "ERV316A3_2q24.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0332"; repClass "LTR"; repEnd "4927"; repFamily "ERVL"; repLeft "4350"; repStart "-299"; chr2 rmsk exon 155588741 155589074 726 - . gene_id "ERV316A3_2q24.1e"; transcript_id "ERV316A3_2q24.1e"; locus "ERV316A3_2q24.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0332"; repClass "LTR"; repEnd "4226"; repFamily "ERVL"; repLeft "3897"; repStart "-1000"; ### ERVL_2q24.1a ### chr2 rmsk gene 155923046 155927646 . - . gene_id "ERVL_2q24.1a"; transcript_id "ERVL_2q24.1a"; locus "ERVL_2q24.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0050"; model_cov "4688"; model_pct "81.4"; chr2 rmsk exon 155923046 155927646 25737 - . gene_id "ERVL_2q24.1a"; transcript_id "ERVL_2q24.1a"; locus "ERVL_2q24.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0050"; repClass "LTR"; repEnd "4690"; repFamily "ERVL"; repLeft "2"; repStart "-1067"; ### HERVH_2q24.1c ### chr2 rmsk gene 156720084 156725844 . - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0173"; model_cov "4906"; model_pct "63.6"; chr2 rmsk exon 156720084 156720495 2733 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 156720496 156720872 2359 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 156720873 156721088 1316 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 156721090 156721756 4288 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 156721759 156722263 3416 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 156722254 156722398 828 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 156722393 156725430 19974 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 156725433 156725844 2770 - . gene_id "HERVH_2q24.1c"; transcript_id "HERVH_2q24.1c"; locus "HERVH_2q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0173"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVL_2q24.1b ### chr2 rmsk gene 156732143 156733858 . + . gene_id "ERVL_2q24.1b"; transcript_id "ERVL_2q24.1b"; locus "ERVL_2q24.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0051"; model_cov "1180"; model_pct "20.5"; chr2 rmsk exon 156732143 156733326 7487 + . gene_id "ERVL_2q24.1b"; transcript_id "ERVL_2q24.1b"; locus "ERVL_2q24.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0051"; repClass "LTR"; repEnd "5749"; repFamily "ERVL"; repLeft "-8"; repStart "4569"; chr2 rmsk exon 156733335 156733858 2860 + . gene_id "ERVL_2q24.1b"; transcript_id "ERVL_2q24.1b"; locus "ERVL_2q24.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0051"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVH_2q24.1d ### chr2 rmsk gene 157340836 157343474 . - . gene_id "HERVH_2q24.1d"; transcript_id "HERVH_2q24.1d"; locus "HERVH_2q24.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0174"; model_cov "2022"; model_pct "26.2"; chr2 rmsk exon 157340836 157340942 685 - . gene_id "HERVH_2q24.1d"; transcript_id "HERVH_2q24.1d"; locus "HERVH_2q24.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0174"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; chr2 rmsk exon 157341040 157342692 9220 - . gene_id "HERVH_2q24.1d"; transcript_id "HERVH_2q24.1d"; locus "HERVH_2q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0174"; repClass "LTR"; repEnd "2398"; repFamily "ERV1"; repLeft "773"; repStart "-5315"; chr2 rmsk exon 157342705 157343066 1462 - . gene_id "HERVH_2q24.1d"; transcript_id "HERVH_2q24.1d"; locus "HERVH_2q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0174"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-7315"; chr2 rmsk exon 157343067 157343474 2046 - . gene_id "HERVH_2q24.1d"; transcript_id "HERVH_2q24.1d"; locus "HERVH_2q24.1d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0174"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "36"; repStart "0"; ### HERVH_2q24.1e ### chr2 rmsk gene 157343501 157345447 . + . gene_id "HERVH_2q24.1e"; transcript_id "HERVH_2q24.1e"; locus "HERVH_2q24.1e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0175"; model_cov "1499"; model_pct "19.4"; chr2 rmsk exon 157343501 157345005 7852 + . gene_id "HERVH_2q24.1e"; transcript_id "HERVH_2q24.1e"; locus "HERVH_2q24.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0175"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6214"; chr2 rmsk exon 157345008 157345447 2466 + . gene_id "HERVH_2q24.1e"; transcript_id "HERVH_2q24.1e"; locus "HERVH_2q24.1e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0175"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_2q24.1f ### chr2 rmsk gene 157940776 157946319 . + . gene_id "ERV316A3_2q24.1f"; transcript_id "ERV316A3_2q24.1f"; locus "ERV316A3_2q24.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0333"; model_cov "4410"; model_pct "84.4"; chr2 rmsk exon 157940776 157941973 6431 + . gene_id "ERV316A3_2q24.1f"; transcript_id "ERV316A3_2q24.1f"; locus "ERV316A3_2q24.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0333"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "-3518"; repStart "487"; chr2 rmsk exon 157942282 157942669 6431 + . gene_id "ERV316A3_2q24.1f"; transcript_id "ERV316A3_2q24.1f"; locus "ERV316A3_2q24.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0333"; repClass "LTR"; repEnd "2099"; repFamily "ERVL"; repLeft "-3127"; repStart "1709"; chr2 rmsk exon 157943298 157944091 6431 + . gene_id "ERV316A3_2q24.1f"; transcript_id "ERV316A3_2q24.1f"; locus "ERV316A3_2q24.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0333"; repClass "LTR"; repEnd "2889"; repFamily "ERVL"; repLeft "-2337"; repStart "2100"; chr2 rmsk exon 157944317 157946319 4578 + . gene_id "ERV316A3_2q24.1f"; transcript_id "ERV316A3_2q24.1f"; locus "ERV316A3_2q24.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0333"; repClass "LTR"; repEnd "4884"; repFamily "ERVL"; repLeft "-342"; repStart "2874"; ### ERVLE_2q24.1c ### chr2 rmsk gene 157997798 157998459 . + . gene_id "ERVLE_2q24.1c"; transcript_id "ERVLE_2q24.1c"; locus "ERVLE_2q24.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0557"; model_cov "666"; model_pct "11.8"; chr2 rmsk exon 157997798 157998459 1687 + . gene_id "ERVLE_2q24.1c"; transcript_id "ERVLE_2q24.1c"; locus "ERVLE_2q24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0557"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "-4280"; repStart "721"; ### ERVLE_2q24.1d ### chr2 rmsk gene 158205645 158207924 . + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0558"; model_cov "1731"; model_pct "30.5"; chr2 rmsk exon 158205645 158206021 671 + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0558"; repClass "LTR"; repEnd "3275"; repFamily "ERVL"; repLeft "-2392"; repStart "2896"; chr2 rmsk exon 158206405 158206533 281 + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0558"; repClass "LTR"; repEnd "3684"; repFamily "ERVL"; repLeft "-1983"; repStart "3553"; chr2 rmsk exon 158206649 158206735 281 + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0558"; repClass "LTR"; repEnd "3856"; repFamily "ERVL"; repLeft "-1811"; repStart "3768"; chr2 rmsk exon 158206799 158207073 431 + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0558"; repClass "LTR"; repEnd "4274"; repFamily "ERVL"; repLeft "-1393"; repStart "3957"; chr2 rmsk exon 158207129 158207924 1487 + . gene_id "ERVLE_2q24.1d"; transcript_id "ERVLE_2q24.1d"; locus "ERVLE_2q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0558"; repClass "LTR"; repEnd "5271"; repFamily "ERVL"; repLeft "-396"; repStart "4455"; ### HERVE_2q24.1a ### chr2 rmsk gene 158846950 158849244 . + . gene_id "HERVE_2q24.1a"; transcript_id "HERVE_2q24.1a"; locus "HERVE_2q24.1a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0016"; model_cov "2273"; model_pct "29.1"; chr2 rmsk exon 158846950 158849244 17038 + . gene_id "HERVE_2q24.1a"; transcript_id "HERVE_2q24.1a"; locus "HERVE_2q24.1a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0016"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "2892"; ### HERVE_2q24.1b ### chr2 rmsk gene 158866185 158870242 . + . gene_id "HERVE_2q24.1b"; transcript_id "HERVE_2q24.1b"; locus "HERVE_2q24.1b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0017"; model_cov "4057"; model_pct "51.9"; chr2 rmsk exon 158866185 158870242 29289 + . gene_id "HERVE_2q24.1b"; transcript_id "HERVE_2q24.1b"; locus "HERVE_2q24.1b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0017"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_2q24.1c ### chr2 rmsk gene 158881457 158886251 . + . gene_id "HERVE_2q24.1c"; transcript_id "HERVE_2q24.1c"; locus "HERVE_2q24.1c"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0018"; model_cov "4526"; model_pct "57.9"; chr2 rmsk exon 158881457 158881650 1209 + . gene_id "HERVE_2q24.1c"; transcript_id "HERVE_2q24.1c"; locus "HERVE_2q24.1c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0018"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; chr2 rmsk exon 158881731 158882660 32970 + . gene_id "HERVE_2q24.1c"; transcript_id "HERVE_2q24.1c"; locus "HERVE_2q24.1c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0018"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "-6226"; repStart "647"; chr2 rmsk exon 158882710 158886251 32970 + . gene_id "HERVE_2q24.1c"; transcript_id "HERVE_2q24.1c"; locus "HERVE_2q24.1c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0018"; repClass "LTR"; repEnd "5174"; repFamily "ERV1"; repLeft "-2639"; repStart "1588"; ### MER4_2q24.2a ### chr2 rmsk gene 160065731 160069590 . - . gene_id "MER4_2q24.2a"; transcript_id "MER4_2q24.2a"; locus "MER4_2q24.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0110"; model_cov "4123"; model_pct "62.5"; chr2 rmsk exon 160065731 160066173 3139 - . gene_id "MER4_2q24.2a"; transcript_id "MER4_2q24.2a"; locus "MER4_2q24.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0110"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 160066175 160066206 16417 - . gene_id "MER4_2q24.2a"; transcript_id "MER4_2q24.2a"; locus "MER4_2q24.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0110"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6569"; repStart "0"; chr2 rmsk exon 160066500 160069590 16417 - . gene_id "MER4_2q24.2a"; transcript_id "MER4_2q24.2a"; locus "MER4_2q24.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0110"; repClass "LTR"; repEnd "6568"; repFamily "ERV1"; repLeft "2474"; repStart "-30"; ### MER4_2q24.2b ### chr2 rmsk gene 160069827 160072587 . - . gene_id "MER4_2q24.2b"; transcript_id "MER4_2q24.2b"; locus "MER4_2q24.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0111"; model_cov "2718"; model_pct "41.2"; chr2 rmsk exon 160069827 160071166 16417 - . gene_id "MER4_2q24.2b"; transcript_id "MER4_2q24.2b"; locus "MER4_2q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0111"; repClass "LTR"; repEnd "6568"; repFamily "ERV1"; repLeft "4791"; repStart "-30"; chr2 rmsk exon 160071206 160071324 7665 - . gene_id "MER4_2q24.2b"; transcript_id "MER4_2q24.2b"; locus "MER4_2q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0111"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "993"; repStart "-5487"; chr2 rmsk exon 160071464 160072134 2648 - . gene_id "MER4_2q24.2b"; transcript_id "MER4_2q24.2b"; locus "MER4_2q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0111"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "1"; repStart "-5774"; chr2 rmsk exon 160072138 160072587 3200 - . gene_id "MER4_2q24.2b"; transcript_id "MER4_2q24.2b"; locus "MER4_2q24.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0111"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3_2q24.2 ### chr2 rmsk gene 160080864 160090141 . - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0027"; model_cov "7018"; model_pct "78.7"; chr2 rmsk exon 160080864 160081585 4178 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 160081589 160081829 1543 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "8701"; repStart "-3"; chr2 rmsk exon 160082499 160084317 11420 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "8508"; repFamily "ERV1"; repLeft "6652"; repStart "-411"; chr2 rmsk exon 160084314 160086815 22479 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "4949"; repFamily "ERV1"; repLeft "2436"; repStart "-3970"; chr2 rmsk exon 160087151 160089260 22479 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "1"; repStart "-6484"; chr2 rmsk exon 160089261 160089914 2962 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "101"; repStart "0"; chr2 rmsk exon 160089913 160090141 1395 - . gene_id "HUERSP3_2q24.2"; transcript_id "HUERSP3_2q24.2"; locus "HUERSP3_2q24.2"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0027"; repClass "LTR"; repEnd "239"; repFamily "ERV1"; repLeft "1"; repStart "-489"; ### ERV316A3_2q24.2a ### chr2 rmsk gene 160538512 160539128 . - . gene_id "ERV316A3_2q24.2a"; transcript_id "ERV316A3_2q24.2a"; locus "ERV316A3_2q24.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0335"; model_cov "609"; model_pct "11.7"; chr2 rmsk exon 160538512 160538832 905 - . gene_id "ERV316A3_2q24.2a"; transcript_id "ERV316A3_2q24.2a"; locus "ERV316A3_2q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0335"; repClass "LTR"; repEnd "4415"; repFamily "ERVL"; repLeft "4095"; repStart "-811"; chr2 rmsk exon 160538826 160539128 1009 - . gene_id "ERV316A3_2q24.2a"; transcript_id "ERV316A3_2q24.2a"; locus "ERV316A3_2q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0335"; repClass "LTR"; repEnd "3875"; repFamily "ERVL"; repLeft "3586"; repStart "-1351"; ### ERVLE_2q24.2a ### chr2 rmsk gene 160554652 160557062 . - . gene_id "ERVLE_2q24.2a"; transcript_id "ERVLE_2q24.2a"; locus "ERVLE_2q24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0561"; model_cov "915"; model_pct "16.1"; chr2 rmsk exon 160554652 160554889 652 - . gene_id "ERVLE_2q24.2a"; transcript_id "ERVLE_2q24.2a"; locus "ERVLE_2q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0561"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "5060"; repStart "-352"; chr2 rmsk exon 160554987 160555419 1300 - . gene_id "ERVLE_2q24.2a"; transcript_id "ERVLE_2q24.2a"; locus "ERVLE_2q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0561"; repClass "LTR"; repEnd "4958"; repFamily "ERVL"; repLeft "4506"; repStart "-709"; chr2 rmsk exon 160556863 160557062 664 - . gene_id "ERVLE_2q24.2a"; transcript_id "ERVLE_2q24.2a"; locus "ERVLE_2q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0561"; repClass "LTR"; repEnd "3103"; repFamily "ERVL"; repLeft "2895"; repStart "-2564"; ### ERV316A3_2q24.2b ### chr2 rmsk gene 160782580 160787301 . + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0336"; model_cov "3864"; model_pct "73.9"; chr2 rmsk exon 160782580 160782746 339 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "244"; repFamily "ERVL"; repLeft "-194"; repStart "81"; chr2 rmsk exon 160782801 160783965 1848 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "1433"; repFamily "ERVL"; repLeft "-3793"; repStart "231"; chr2 rmsk exon 160784016 160784270 404 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "1555"; repFamily "ERVL"; repLeft "-3671"; repStart "1257"; chr2 rmsk exon 160784534 160784714 4479 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "1783"; repFamily "ERVL"; repLeft "-3443"; repStart "1629"; chr2 rmsk exon 160785004 160786993 4479 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "3799"; repFamily "ERVL"; repLeft "-1427"; repStart "1784"; chr2 rmsk exon 160786983 160787118 566 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "-1426"; repStart "3660"; chr2 rmsk exon 160787126 160787180 296 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "4229"; repFamily "ERVL"; repLeft "-997"; repStart "4174"; chr2 rmsk exon 160787262 160787301 229 + . gene_id "ERV316A3_2q24.2b"; transcript_id "ERV316A3_2q24.2b"; locus "ERV316A3_2q24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0336"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "-18"; repStart "381"; ### ERVLE_2q24.2b ### chr2 rmsk gene 160944810 160949283 . + . gene_id "ERVLE_2q24.2b"; transcript_id "ERVLE_2q24.2b"; locus "ERVLE_2q24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0562"; model_cov "3866"; model_pct "68.2"; chr2 rmsk exon 160944810 160946663 5636 + . gene_id "ERVLE_2q24.2b"; transcript_id "ERVLE_2q24.2b"; locus "ERVLE_2q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0562"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "-2854"; repStart "860"; chr2 rmsk exon 160946943 160947420 5636 + . gene_id "ERVLE_2q24.2b"; transcript_id "ERVLE_2q24.2b"; locus "ERVLE_2q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0562"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "-2337"; repStart "2814"; chr2 rmsk exon 160947735 160949027 5636 + . gene_id "ERVLE_2q24.2b"; transcript_id "ERVLE_2q24.2b"; locus "ERVLE_2q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0562"; repClass "LTR"; repEnd "4646"; repFamily "ERVL"; repLeft "-1021"; repStart "3331"; chr2 rmsk exon 160949193 160949283 310 + . gene_id "ERVLE_2q24.2b"; transcript_id "ERVLE_2q24.2b"; locus "ERVLE_2q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0562"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "-777"; repStart "4808"; ### ERV316A3_2q24.2c ### chr2 rmsk gene 161486903 161489610 . - . gene_id "ERV316A3_2q24.2c"; transcript_id "ERV316A3_2q24.2c"; locus "ERV316A3_2q24.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0337"; model_cov "1659"; model_pct "31.7"; chr2 rmsk exon 161486903 161487446 3202 - . gene_id "ERV316A3_2q24.2c"; transcript_id "ERV316A3_2q24.2c"; locus "ERV316A3_2q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0337"; repClass "LTR"; repEnd "2054"; repFamily "ERVL"; repLeft "1554"; repStart "-3172"; chr2 rmsk exon 161487747 161488305 3202 - . gene_id "ERV316A3_2q24.2c"; transcript_id "ERV316A3_2q24.2c"; locus "ERV316A3_2q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0337"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "982"; repStart "-3673"; chr2 rmsk exon 161488614 161489229 1159 - . gene_id "ERV316A3_2q24.2c"; transcript_id "ERV316A3_2q24.2c"; locus "ERV316A3_2q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0337"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "232"; repStart "-4406"; chr2 rmsk exon 161489430 161489610 559 - . gene_id "ERV316A3_2q24.2c"; transcript_id "ERV316A3_2q24.2c"; locus "ERV316A3_2q24.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0337"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "258"; repStart "-2"; ### ERVLB4_2q24.2 ### chr2 rmsk gene 161768160 161769489 . - . gene_id "ERVLB4_2q24.2"; transcript_id "ERVLB4_2q24.2"; locus "ERVLB4_2q24.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0241"; model_cov "1351"; model_pct "23.6"; chr2 rmsk exon 161768160 161769489 6768 - . gene_id "ERVLB4_2q24.2"; transcript_id "ERVLB4_2q24.2"; locus "ERVLB4_2q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0241"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "790"; repStart "-3573"; ### HERVL40_2q24.2 ### chr2 rmsk gene 161831880 161836115 . + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0049"; model_cov "2063"; model_pct "37.3"; chr2 rmsk exon 161831880 161832360 1657 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 161832362 161832711 991 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-5173"; repStart "1"; chr2 rmsk exon 161833045 161833305 991 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "602"; repFamily "ERVL"; repLeft "-4928"; repStart "358"; chr2 rmsk exon 161833309 161833599 994 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "-4676"; repStart "564"; chr2 rmsk exon 161833617 161834421 3314 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "4543"; repFamily "ERVL"; repLeft "-987"; repStart "3729"; chr2 rmsk exon 161835688 161835794 286 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "-349"; repStart "5075"; chr2 rmsk exon 161835769 161836115 779 + . gene_id "HERVL40_2q24.2"; transcript_id "HERVL40_2q24.2"; locus "HERVL40_2q24.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0049"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5277"; ### ERVLE_2q24.2c ### chr2 rmsk gene 162075545 162076401 . - . gene_id "ERVLE_2q24.2c"; transcript_id "ERVLE_2q24.2c"; locus "ERVLE_2q24.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0563"; model_cov "916"; model_pct "16.2"; chr2 rmsk exon 162075545 162076401 2379 - . gene_id "ERVLE_2q24.2c"; transcript_id "ERVLE_2q24.2c"; locus "ERVLE_2q24.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0563"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "3291"; repStart "-1460"; ### ERVLE_2q24.2d ### chr2 rmsk gene 162080254 162081418 . - . gene_id "ERVLE_2q24.2d"; transcript_id "ERVLE_2q24.2d"; locus "ERVLE_2q24.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0564"; model_cov "1244"; model_pct "22.0"; chr2 rmsk exon 162080254 162080334 289 - . gene_id "ERVLE_2q24.2d"; transcript_id "ERVLE_2q24.2d"; locus "ERVLE_2q24.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0564"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "3212"; repStart "-2372"; chr2 rmsk exon 162080418 162081418 2119 - . gene_id "ERVLE_2q24.2d"; transcript_id "ERVLE_2q24.2d"; locus "ERVLE_2q24.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0564"; repClass "LTR"; repEnd "3208"; repFamily "ERVL"; repLeft "2047"; repStart "-2459"; ### HUERSP2_2q24.2 ### chr2 rmsk gene 162324003 162329299 . - . gene_id "HUERSP2_2q24.2"; transcript_id "HUERSP2_2q24.2"; locus "HUERSP2_2q24.2"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0024"; model_cov "2843"; model_pct "92.1"; chr2 rmsk exon 162324003 162324785 5043 - . gene_id "HUERSP2_2q24.2"; transcript_id "HUERSP2_2q24.2"; locus "HUERSP2_2q24.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0024"; repClass "LTR"; repEnd "795"; repFamily "ERV1"; repLeft "1"; repStart "-42"; chr2 rmsk exon 162324786 162326506 16864 - . gene_id "HUERSP2_2q24.2"; transcript_id "HUERSP2_2q24.2"; locus "HUERSP2_2q24.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0024"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1305"; repStart "0"; chr2 rmsk exon 162326818 162327876 16864 - . gene_id "HUERSP2_2q24.2"; transcript_id "HUERSP2_2q24.2"; locus "HUERSP2_2q24.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0024"; repClass "LTR"; repEnd "1304"; repFamily "ERV1"; repLeft "244"; repStart "-1784"; chr2 rmsk exon 162328534 162329299 4606 - . gene_id "HUERSP2_2q24.2"; transcript_id "HUERSP2_2q24.2"; locus "HUERSP2_2q24.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0024"; repClass "LTR"; repEnd "770"; repFamily "ERV1"; repLeft "2"; repStart "-67"; ### LTR25_2q24.2 ### chr2 rmsk gene 162490534 162496239 . + . gene_id "LTR25_2q24.2"; transcript_id "LTR25_2q24.2"; locus "LTR25_2q24.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0018"; model_cov "4306"; model_pct "59.9"; chr2 rmsk exon 162490534 162490749 341 + . gene_id "LTR25_2q24.2"; transcript_id "LTR25_2q24.2"; locus "LTR25_2q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0018"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-6840"; repStart "137"; chr2 rmsk exon 162490746 162491472 1437 + . gene_id "LTR25_2q24.2"; transcript_id "LTR25_2q24.2"; locus "LTR25_2q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0018"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "-6204"; repStart "321"; chr2 rmsk exon 162491468 162492865 18356 + . gene_id "LTR25_2q24.2"; transcript_id "LTR25_2q24.2"; locus "LTR25_2q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0018"; repClass "LTR"; repEnd "3849"; repFamily "ERV1"; repLeft "-3339"; repStart "3752"; chr2 rmsk exon 162492893 162496239 18356 + . gene_id "LTR25_2q24.2"; transcript_id "LTR25_2q24.2"; locus "LTR25_2q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0018"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "-3"; repStart "3850"; ### ERV316A3_2q24.3a ### chr2 rmsk gene 162911942 162918630 . + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0338"; model_cov "2982"; model_pct "57.1"; chr2 rmsk exon 162911942 162912325 1358 + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0338"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr2 rmsk exon 162912600 162912647 1358 + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0338"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-15"; repStart "393"; chr2 rmsk exon 162912778 162915551 5294 + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0338"; repClass "LTR"; repEnd "2892"; repFamily "ERVL"; repLeft "-2334"; repStart "95"; chr2 rmsk exon 162917852 162918042 795 + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0338"; repClass "LTR"; repEnd "3079"; repFamily "ERVL"; repLeft "-2147"; repStart "2894"; chr2 rmsk exon 162918207 162918630 1394 + . gene_id "ERV316A3_2q24.3a"; transcript_id "ERV316A3_2q24.3a"; locus "ERV316A3_2q24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0338"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "1"; ### ERV316A3_2q24.3b ### chr2 rmsk gene 162981788 162983298 . + . gene_id "ERV316A3_2q24.3b"; transcript_id "ERV316A3_2q24.3b"; locus "ERV316A3_2q24.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0339"; model_cov "1134"; model_pct "21.7"; chr2 rmsk exon 162981788 162982099 1216 + . gene_id "ERV316A3_2q24.3b"; transcript_id "ERV316A3_2q24.3b"; locus "ERV316A3_2q24.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0339"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "-135"; repStart "18"; chr2 rmsk exon 162982101 162983298 3373 + . gene_id "ERV316A3_2q24.3b"; transcript_id "ERV316A3_2q24.3b"; locus "ERV316A3_2q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0339"; repClass "LTR"; repEnd "3539"; repFamily "ERVL"; repLeft "-1687"; repStart "2405"; ### MER61_2q24.3 ### chr2 rmsk gene 163143522 163148982 . + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0059"; model_cov "5051"; model_pct "96.8"; chr2 rmsk exon 163143522 163143864 1982 + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0059"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 163143865 163146021 11577 + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0059"; repClass "LTR"; repEnd "2861"; repFamily "ERV1"; repLeft "-2356"; repStart "1"; chr2 rmsk exon 163146538 163147736 11577 + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0059"; repClass "LTR"; repEnd "4116"; repFamily "ERV1"; repLeft "-1101"; repStart "2862"; chr2 rmsk exon 163147737 163148643 6055 + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0059"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4280"; chr2 rmsk exon 163148644 163148982 2016 + . gene_id "MER61_2q24.3"; transcript_id "MER61_2q24.3"; locus "MER61_2q24.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0059"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_2q24.3c ### chr2 rmsk gene 163229286 163231364 . - . gene_id "ERV316A3_2q24.3c"; transcript_id "ERV316A3_2q24.3c"; locus "ERV316A3_2q24.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0340"; model_cov "1857"; model_pct "35.5"; chr2 rmsk exon 163229286 163231051 4095 - . gene_id "ERV316A3_2q24.3c"; transcript_id "ERV316A3_2q24.3c"; locus "ERV316A3_2q24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0340"; repClass "LTR"; repEnd "1952"; repFamily "ERVL"; repLeft "95"; repStart "-3274"; chr2 rmsk exon 163231109 163231364 983 - . gene_id "ERV316A3_2q24.3c"; transcript_id "ERV316A3_2q24.3c"; locus "ERV316A3_2q24.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0340"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "205"; repStart "-2"; ### ERVLE_2q24.3a ### chr2 rmsk gene 163581868 163584936 . + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0565"; model_cov "2177"; model_pct "38.4"; chr2 rmsk exon 163581868 163582867 2008 + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0565"; repClass "LTR"; repEnd "1849"; repFamily "ERVL"; repLeft "-3818"; repStart "845"; chr2 rmsk exon 163583045 163583266 2008 + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0565"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "-3578"; repStart "1850"; chr2 rmsk exon 163583371 163583773 672 + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0565"; repClass "LTR"; repEnd "2652"; repFamily "ERVL"; repLeft "-3015"; repStart "2229"; chr2 rmsk exon 163583795 163584102 1095 + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0565"; repClass "LTR"; repEnd "3030"; repFamily "ERVL"; repLeft "-2637"; repStart "2716"; chr2 rmsk exon 163584755 163584936 423 + . gene_id "ERVLE_2q24.3a"; transcript_id "ERVLE_2q24.3a"; locus "ERVLE_2q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0565"; repClass "LTR"; repEnd "3545"; repFamily "ERVL"; repLeft "-2122"; repStart "3348"; ### HERVL_2q24.3a ### chr2 rmsk gene 164171803 164177223 . - . gene_id "HERVL_2q24.3a"; transcript_id "HERVL_2q24.3a"; locus "HERVL_2q24.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0188"; model_cov "4911"; model_pct "86.9"; chr2 rmsk exon 164171803 164172210 2788 - . gene_id "HERVL_2q24.3a"; transcript_id "HERVL_2q24.3a"; locus "HERVL_2q24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0188"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr2 rmsk exon 164172211 164177131 37437 - . gene_id "HERVL_2q24.3a"; transcript_id "HERVL_2q24.3a"; locus "HERVL_2q24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0188"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "743"; repStart "0"; chr2 rmsk exon 164177132 164177223 700 - . gene_id "HERVL_2q24.3a"; transcript_id "HERVL_2q24.3a"; locus "HERVL_2q24.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0188"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "1"; repStart "-361"; ### HERVH_2q24.3a ### chr2 rmsk gene 164295826 164301566 . + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0176"; model_cov "4918"; model_pct "63.8"; chr2 rmsk exon 164295826 164296258 3054 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 164296261 164299250 20070 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 164299245 164299394 949 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 164299385 164299903 3325 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "4006"; repFamily "ERV1"; repLeft "-3707"; repStart "3492"; chr2 rmsk exon 164299888 164300541 4089 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4492"; chr2 rmsk exon 164300539 164300759 1314 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 164300760 164301137 2544 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 164301138 164301566 3209 + . gene_id "HERVH_2q24.3a"; transcript_id "HERVH_2q24.3a"; locus "HERVH_2q24.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0176"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_2q24.3b ### chr2 rmsk gene 164459160 164463273 . + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0177"; model_cov "3762"; model_pct "48.8"; chr2 rmsk exon 164459160 164459641 3233 + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0177"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 164459644 164462531 16329 + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0177"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 164462511 164462660 974 + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0177"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 164462651 164463157 3374 + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0177"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "-3718"; repStart "3492"; chr2 rmsk exon 164463158 164463273 921 + . gene_id "HERVH_2q24.3b"; transcript_id "HERVH_2q24.3b"; locus "HERVH_2q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0177"; repClass "LTR"; repEnd "4603"; repFamily "ERV1"; repLeft "-3110"; repStart "4488"; ### HERVW_2q24.3 ### chr2 rmsk gene 164657911 164659611 . - . gene_id "HERVW_2q24.3"; transcript_id "HERVW_2q24.3"; locus "HERVW_2q24.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0046"; model_cov "1380"; model_pct "16.0"; chr2 rmsk exon 164657911 164658246 2517 - . gene_id "HERVW_2q24.3"; transcript_id "HERVW_2q24.3"; locus "HERVW_2q24.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0046"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr2 rmsk exon 164658247 164658538 2371 - . gene_id "HERVW_2q24.3"; transcript_id "HERVW_2q24.3"; locus "HERVW_2q24.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0046"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 164658529 164658567 269 - . gene_id "HERVW_2q24.3"; transcript_id "HERVW_2q24.3"; locus "HERVW_2q24.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0046"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 164658561 164659611 8583 - . gene_id "HERVW_2q24.3"; transcript_id "HERVW_2q24.3"; locus "HERVW_2q24.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0046"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4968"; repStart "-2607"; ### HERVL_2q24.3b ### chr2 rmsk gene 164866069 164867487 . + . gene_id "HERVL_2q24.3b"; transcript_id "HERVL_2q24.3b"; locus "HERVL_2q24.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0190"; model_cov "894"; model_pct "15.8"; chr2 rmsk exon 164866069 164866926 6669 + . gene_id "HERVL_2q24.3b"; transcript_id "HERVL_2q24.3b"; locus "HERVL_2q24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0190"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4760"; chr2 rmsk exon 164866927 164867325 3166 + . gene_id "HERVL_2q24.3b"; transcript_id "HERVL_2q24.3b"; locus "HERVL_2q24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0190"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr2 rmsk exon 164867434 164867487 380 + . gene_id "HERVL_2q24.3b"; transcript_id "HERVL_2q24.3b"; locus "HERVL_2q24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0190"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "392"; ### MER4B_2q24.3 ### chr2 rmsk gene 165434158 165437437 . - . gene_id "MER4B_2q24.3"; transcript_id "MER4B_2q24.3"; locus "MER4B_2q24.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0066"; model_cov "3384"; model_pct "50.1"; chr2 rmsk exon 165434158 165437400 15783 - . gene_id "MER4B_2q24.3"; transcript_id "MER4B_2q24.3"; locus "MER4B_2q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0066"; repClass "LTR"; repEnd "6052"; repFamily "ERV1"; repLeft "2729"; repStart "-706"; chr2 rmsk exon 165437368 165437437 1260 - . gene_id "MER4B_2q24.3"; transcript_id "MER4B_2q24.3"; locus "MER4B_2q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0066"; repClass "LTR"; repEnd "2929"; repFamily "ERV1"; repLeft "2868"; repStart "-3829"; ### ERV316A3_2q24.3d ### chr2 rmsk gene 165691621 165696599 . - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0341"; model_cov "3678"; model_pct "70.4"; chr2 rmsk exon 165691621 165692009 747 - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0341"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "28"; repStart "0"; chr2 rmsk exon 165692081 165692302 898 - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0341"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "4963"; repStart "-46"; chr2 rmsk exon 165692325 165693311 2701 - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0341"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "3838"; repStart "-402"; chr2 rmsk exon 165693628 165696163 5853 - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0341"; repClass "LTR"; repEnd "3832"; repFamily "ERVL"; repLeft "1357"; repStart "-1394"; chr2 rmsk exon 165696300 165696599 678 - . gene_id "ERV316A3_2q24.3d"; transcript_id "ERV316A3_2q24.3d"; locus "ERV316A3_2q24.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0341"; repClass "LTR"; repEnd "424"; repFamily "ERVL"; repLeft "106"; repStart "-27"; ### HERVH_2q24.3c ### chr2 rmsk gene 165707552 165716198 . - . gene_id "HERVH_2q24.3c"; transcript_id "HERVH_2q24.3c"; locus "HERVH_2q24.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0178"; model_cov "7712"; model_pct "100.0"; chr2 rmsk exon 165707552 165708032 3342 - . gene_id "HERVH_2q24.3c"; transcript_id "HERVH_2q24.3c"; locus "HERVH_2q24.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0178"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 165708033 165715715 52673 - . gene_id "HERVH_2q24.3c"; transcript_id "HERVH_2q24.3c"; locus "HERVH_2q24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0178"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 165715718 165716198 3235 - . gene_id "HERVH_2q24.3c"; transcript_id "HERVH_2q24.3c"; locus "HERVH_2q24.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0178"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_2q24.3b ### chr2 rmsk gene 165779881 165783164 . - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0566"; model_cov "2617"; model_pct "46.2"; chr2 rmsk exon 165779881 165780646 4983 - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0566"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "3563"; repStart "-1289"; chr2 rmsk exon 165780679 165781317 4983 - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0566"; repClass "LTR"; repEnd "3562"; repFamily "ERVL"; repLeft "2903"; repStart "-2105"; chr2 rmsk exon 165781659 165782273 3317 - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0566"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "2132"; repStart "-2880"; chr2 rmsk exon 165782507 165782808 3317 - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0566"; repClass "LTR"; repEnd "2131"; repFamily "ERVL"; repLeft "1805"; repStart "-3536"; chr2 rmsk exon 165782999 165783164 486 - . gene_id "ERVLE_2q24.3b"; transcript_id "ERVLE_2q24.3b"; locus "ERVLE_2q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0566"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "1368"; repStart "-4137"; ### ERVLE_2q24.3c ### chr2 rmsk gene 166559736 166561139 . - . gene_id "ERVLE_2q24.3c"; transcript_id "ERVLE_2q24.3c"; locus "ERVLE_2q24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0568"; model_cov "1525"; model_pct "26.9"; chr2 rmsk exon 166559736 166560165 426 - . gene_id "ERVLE_2q24.3c"; transcript_id "ERVLE_2q24.3c"; locus "ERVLE_2q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0568"; repClass "LTR"; repEnd "3375"; repFamily "ERVL"; repLeft "2886"; repStart "-2292"; chr2 rmsk exon 166560184 166560537 819 - . gene_id "ERVLE_2q24.3c"; transcript_id "ERVLE_2q24.3c"; locus "ERVLE_2q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0568"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "2385"; repStart "-2810"; chr2 rmsk exon 166560591 166561139 1031 - . gene_id "ERVLE_2q24.3c"; transcript_id "ERVLE_2q24.3c"; locus "ERVLE_2q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0568"; repClass "LTR"; repEnd "2394"; repFamily "ERVL"; repLeft "1830"; repStart "-3273"; ### ERVLB4_2q24.3a ### chr2 rmsk gene 166601946 166604205 . - . gene_id "ERVLB4_2q24.3a"; transcript_id "ERVLB4_2q24.3a"; locus "ERVLB4_2q24.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0242"; model_cov "1619"; model_pct "28.3"; chr2 rmsk exon 166601946 166602494 2157 - . gene_id "ERVLB4_2q24.3a"; transcript_id "ERVLB4_2q24.3a"; locus "ERVLB4_2q24.3a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0242"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr2 rmsk exon 166602495 166604085 8170 - . gene_id "ERVLB4_2q24.3a"; transcript_id "ERVLB4_2q24.3a"; locus "ERVLB4_2q24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0242"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4095"; repStart "0"; chr2 rmsk exon 166604087 166604205 695 - . gene_id "ERVLB4_2q24.3a"; transcript_id "ERVLB4_2q24.3a"; locus "ERVLB4_2q24.3a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0242"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "1"; repStart "-382"; ### HML5_2q24.3 ### chr2 rmsk gene 166609117 166613448 . + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0019"; model_cov "1935"; model_pct "28.3"; chr2 rmsk exon 166609117 166609683 4283 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 166609734 166609785 226 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "584"; repFamily "ERVK"; repLeft "-16"; repStart "532"; chr2 rmsk exon 166609815 166610565 3421 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "752"; repFamily "ERVK"; repLeft "-6085"; repStart "9"; chr2 rmsk exon 166610968 166611126 852 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "2489"; repFamily "ERVK"; repLeft "-4348"; repStart "2327"; chr2 rmsk exon 166612288 166612367 528 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "3553"; repFamily "ERVK"; repLeft "-3284"; repStart "3474"; chr2 rmsk exon 166612364 166613448 6446 + . gene_id "HML5_2q24.3"; transcript_id "HML5_2q24.3"; locus "HML5_2q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0019"; repClass "LTR"; repEnd "4824"; repFamily "ERVK"; repLeft "-2013"; repStart "3873"; ### HERVKC4_2q24.3 ### chr2 rmsk gene 166613512 166614455 . + . gene_id "HERVKC4_2q24.3"; transcript_id "HERVKC4_2q24.3"; locus "HERVKC4_2q24.3"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0005"; model_cov "902"; model_pct "17.1"; chr2 rmsk exon 166613512 166614455 4352 + . gene_id "HERVKC4_2q24.3"; transcript_id "HERVKC4_2q24.3"; locus "HERVKC4_2q24.3"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0005"; repClass "LTR"; repEnd "3528"; repFamily "ERVK"; repLeft "-1734"; repStart "2626"; ### ERVLE_2q24.3d ### chr2 rmsk gene 166761575 166762276 . - . gene_id "ERVLE_2q24.3d"; transcript_id "ERVLE_2q24.3d"; locus "ERVLE_2q24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0569"; model_cov "694"; model_pct "12.2"; chr2 rmsk exon 166761575 166762276 967 - . gene_id "ERVLE_2q24.3d"; transcript_id "ERVLE_2q24.3d"; locus "ERVLE_2q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0569"; repClass "LTR"; repEnd "4094"; repFamily "ERVL"; repLeft "3400"; repStart "-1573"; ### ERV316A3_2q24.3e ### chr2 rmsk gene 167016606 167018662 . - . gene_id "ERV316A3_2q24.3e"; transcript_id "ERV316A3_2q24.3e"; locus "ERV316A3_2q24.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0342"; model_cov "1296"; model_pct "24.8"; chr2 rmsk exon 167016606 167017066 1418 - . gene_id "ERV316A3_2q24.3e"; transcript_id "ERV316A3_2q24.3e"; locus "ERV316A3_2q24.3e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0342"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 167017067 167017702 821 - . gene_id "ERV316A3_2q24.3e"; transcript_id "ERV316A3_2q24.3e"; locus "ERV316A3_2q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0342"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4473"; repStart "0"; chr2 rmsk exon 167017762 167018288 1488 - . gene_id "ERV316A3_2q24.3e"; transcript_id "ERV316A3_2q24.3e"; locus "ERV316A3_2q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0342"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "95"; repStart "-4588"; chr2 rmsk exon 167018347 167018662 551 - . gene_id "ERV316A3_2q24.3e"; transcript_id "ERV316A3_2q24.3e"; locus "ERV316A3_2q24.3e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0342"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "119"; repStart "0"; ### ERVLB4_2q24.3b ### chr2 rmsk gene 167303747 167305167 . - . gene_id "ERVLB4_2q24.3b"; transcript_id "ERVLB4_2q24.3b"; locus "ERVLB4_2q24.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0244"; model_cov "830"; model_pct "14.5"; chr2 rmsk exon 167303747 167304566 3746 - . gene_id "ERVLB4_2q24.3b"; transcript_id "ERVLB4_2q24.3b"; locus "ERVLB4_2q24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0244"; repClass "LTR"; repEnd "831"; repFamily "ERVL"; repLeft "1"; repStart "-4883"; chr2 rmsk exon 167304567 167304635 257 - . gene_id "ERVLB4_2q24.3b"; transcript_id "ERVLB4_2q24.3b"; locus "ERVLB4_2q24.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0244"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "456"; repStart "-2"; chr2 rmsk exon 167304726 167305167 2173 - . gene_id "ERVLB4_2q24.3b"; transcript_id "ERVLB4_2q24.3b"; locus "ERVLB4_2q24.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0244"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "1"; repStart "-56"; ### ERVLB4_2q24.3c ### chr2 rmsk gene 168257550 168263450 . + . gene_id "ERVLB4_2q24.3c"; transcript_id "ERVLB4_2q24.3c"; locus "ERVLB4_2q24.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0245"; model_cov "5652"; model_pct "98.9"; chr2 rmsk exon 168257550 168258215 26871 + . gene_id "ERVLB4_2q24.3c"; transcript_id "ERVLB4_2q24.3c"; locus "ERVLB4_2q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0245"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-5065"; repStart "1"; chr2 rmsk exon 168258541 168263450 26871 + . gene_id "ERVLB4_2q24.3c"; transcript_id "ERVLB4_2q24.3c"; locus "ERVLB4_2q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0245"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "710"; ### PRIMA4_2q24.3 ### chr2 rmsk gene 168501085 168504784 . - . gene_id "PRIMA4_2q24.3"; transcript_id "PRIMA4_2q24.3"; locus "PRIMA4_2q24.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0036"; model_cov "3035"; model_pct "36.7"; chr2 rmsk exon 168501085 168502949 2399 - . gene_id "PRIMA4_2q24.3"; transcript_id "PRIMA4_2q24.3"; locus "PRIMA4_2q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0036"; repClass "LTR"; repEnd "6402"; repFamily "ERV1"; repLeft "4598"; repStart "-1868"; chr2 rmsk exon 168503323 168504128 2399 - . gene_id "PRIMA4_2q24.3"; transcript_id "PRIMA4_2q24.3"; locus "PRIMA4_2q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0036"; repClass "LTR"; repEnd "4597"; repFamily "ERV1"; repLeft "3769"; repStart "-3673"; chr2 rmsk exon 168504390 168504784 2399 - . gene_id "PRIMA4_2q24.3"; transcript_id "PRIMA4_2q24.3"; locus "PRIMA4_2q24.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0036"; repClass "LTR"; repEnd "3768"; repFamily "ERV1"; repLeft "3365"; repStart "-4502"; ### HERVH_2q31.1a ### chr2 rmsk gene 169133783 169136806 . + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0179"; model_cov "2591"; model_pct "33.6"; chr2 rmsk exon 169133783 169133945 1003 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "2825"; chr2 rmsk exon 169133940 169134089 941 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 169134080 169135790 7918 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3478"; chr2 rmsk exon 169135792 169136011 1511 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 169136012 169136392 2451 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 169136393 169136806 3114 + . gene_id "HERVH_2q31.1a"; transcript_id "HERVH_2q31.1a"; locus "HERVH_2q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0179"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### HERVL18_2q31.1 ### chr2 rmsk gene 169711625 169717593 . - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0027"; model_cov "4964"; model_pct "82.1"; chr2 rmsk exon 169711625 169712096 1782 - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0027"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 169712250 169713909 11213 - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0027"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4394"; repStart "0"; chr2 rmsk exon 169713912 169714796 4413 - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0027"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2718"; repStart "-2468"; chr2 rmsk exon 169714794 169717187 13261 - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0027"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2"; repStart "-3595"; chr2 rmsk exon 169717196 169717593 1302 - . gene_id "HERVL18_2q31.1"; transcript_id "HERVL18_2q31.1"; locus "HERVL18_2q31.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0027"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "270"; repStart "-4"; ### HML5_2q31.1a ### chr2 rmsk gene 170112017 170119784 . + . gene_id "HML5_2q31.1a"; transcript_id "HML5_2q31.1a"; locus "HML5_2q31.1a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0020"; model_cov "6836"; model_pct "100.0"; chr2 rmsk exon 170112017 170112490 3361 + . gene_id "HML5_2q31.1a"; transcript_id "HML5_2q31.1a"; locus "HML5_2q31.1a"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0020"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 170112491 170119294 53590 + . gene_id "HML5_2q31.1a"; transcript_id "HML5_2q31.1a"; locus "HML5_2q31.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0020"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 170119295 170119784 3397 + . gene_id "HML5_2q31.1a"; transcript_id "HML5_2q31.1a"; locus "HML5_2q31.1a"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0020"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER61_2q31.1a ### chr2 rmsk gene 170207243 170212933 . - . gene_id "MER61_2q31.1a"; transcript_id "MER61_2q31.1a"; locus "MER61_2q31.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0060"; model_cov "4825"; model_pct "92.5"; chr2 rmsk exon 170207243 170211952 25035 - . gene_id "MER61_2q31.1a"; transcript_id "MER61_2q31.1a"; locus "MER61_2q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0060"; repClass "LTR"; repEnd "5114"; repFamily "ERV1"; repLeft "467"; repStart "-103"; chr2 rmsk exon 170212267 170212322 338 - . gene_id "MER61_2q31.1a"; transcript_id "MER61_2q31.1a"; locus "MER61_2q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0060"; repClass "LTR"; repEnd "399"; repFamily "ERV1"; repLeft "345"; repStart "-4818"; chr2 rmsk exon 170212395 170212520 654 - . gene_id "MER61_2q31.1a"; transcript_id "MER61_2q31.1a"; locus "MER61_2q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0060"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "1"; repStart "-5092"; chr2 rmsk exon 170212521 170212933 1981 - . gene_id "MER61_2q31.1a"; transcript_id "MER61_2q31.1a"; locus "MER61_2q31.1a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0060"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "14"; repStart "0"; ### HUERSP1_2q31.1a ### chr2 rmsk gene 170447631 170455398 . - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0033"; model_cov "6483"; model_pct "100.0"; chr2 rmsk exon 170447631 170448360 4645 - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0033"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 170448362 170449495 17886 - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0033"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "4656"; repStart "-1"; chr2 rmsk exon 170449807 170453409 25865 - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0033"; repClass "LTR"; repEnd "4734"; repFamily "ERV1"; repLeft "1107"; repStart "-1529"; chr2 rmsk exon 170453454 170454682 25865 - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0033"; repClass "LTR"; repEnd "1251"; repFamily "ERV1"; repLeft "1"; repStart "-5012"; chr2 rmsk exon 170454683 170455398 4373 - . gene_id "HUERSP1_2q31.1a"; transcript_id "HUERSP1_2q31.1a"; locus "HUERSP1_2q31.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0033"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11D_2q31.1 ### chr2 rmsk gene 170615660 170619450 . - . gene_id "HERVK11D_2q31.1"; transcript_id "HERVK11D_2q31.1"; locus "HERVK11D_2q31.1"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0003"; model_cov "2187"; model_pct "28.2"; chr2 rmsk exon 170615660 170616557 8179 - . gene_id "HERVK11D_2q31.1"; transcript_id "HERVK11D_2q31.1"; locus "HERVK11D_2q31.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0003"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 170616558 170618535 8714 - . gene_id "HERVK11D_2q31.1"; transcript_id "HERVK11D_2q31.1"; locus "HERVK11D_2q31.1"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0003"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "5565"; repStart "0"; chr2 rmsk exon 170618536 170619450 7555 - . gene_id "HERVK11D_2q31.1"; transcript_id "HERVK11D_2q31.1"; locus "HERVK11D_2q31.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0003"; repClass "LTR"; repEnd "892"; repFamily "ERVK"; repLeft "1"; repStart "-5"; ### HERVH_2q31.1b ### chr2 rmsk gene 170977458 170983386 . - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0180"; model_cov "5263"; model_pct "68.2"; chr2 rmsk exon 170977458 170977858 2739 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 170977859 170978236 2481 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 170978237 170978454 1435 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5598"; repStart "-1894"; chr2 rmsk exon 170978454 170979119 4339 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 170979122 170982983 26667 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr2 rmsk exon 170982986 170983386 2741 - . gene_id "HERVH_2q31.1b"; transcript_id "HERVH_2q31.1b"; locus "HERVH_2q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0180"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_2q31.1a ### chr2 rmsk gene 171560037 171562107 . - . gene_id "HERVW_2q31.1a"; transcript_id "HERVW_2q31.1a"; locus "HERVW_2q31.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0047"; model_cov "1823"; model_pct "21.1"; chr2 rmsk exon 171560037 171560360 2664 - . gene_id "HERVW_2q31.1a"; transcript_id "HERVW_2q31.1a"; locus "HERVW_2q31.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0047"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr2 rmsk exon 171560361 171560652 2547 - . gene_id "HERVW_2q31.1a"; transcript_id "HERVW_2q31.1a"; locus "HERVW_2q31.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0047"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 171560643 171560681 296 - . gene_id "HERVW_2q31.1a"; transcript_id "HERVW_2q31.1a"; locus "HERVW_2q31.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0047"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 171560675 171562107 11446 - . gene_id "HERVW_2q31.1a"; transcript_id "HERVW_2q31.1a"; locus "HERVW_2q31.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0047"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4525"; repStart "-2607"; ### HERV4_2q31.1 ### chr2 rmsk gene 171827382 171833335 . + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0019"; model_cov "4364"; model_pct "66.7"; chr2 rmsk exon 171827382 171827789 1351 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "126"; chr2 rmsk exon 171827790 171827877 436 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "87"; repFamily "ERV1"; repLeft "-6452"; repStart "1"; chr2 rmsk exon 171827949 171828389 2788 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "-6040"; repStart "61"; chr2 rmsk exon 171828706 171830109 7039 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "2042"; repFamily "ERV1"; repLeft "-4497"; repStart "554"; chr2 rmsk exon 171831120 171831391 1570 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "2456"; repFamily "ERV1"; repLeft "-4083"; repStart "2158"; chr2 rmsk exon 171831933 171832010 390 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "2535"; repFamily "ERV1"; repLeft "-4004"; repStart "2443"; chr2 rmsk exon 171832261 171833335 1678 + . gene_id "HERV4_2q31.1"; transcript_id "HERV4_2q31.1"; locus "HERV4_2q31.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0019"; repClass "LTR"; repEnd "6332"; repFamily "ERV1"; repLeft "-207"; repStart "4370"; ### HML5_2q31.1b ### chr2 rmsk gene 172513063 172519738 . + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0021"; model_cov "5303"; model_pct "77.6"; chr2 rmsk exon 172513063 172513538 3052 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "-4"; repStart "3"; chr2 rmsk exon 172513565 172514275 4363 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "-6096"; repStart "24"; chr2 rmsk exon 172514701 172514836 774 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "2470"; repFamily "ERVK"; repLeft "-4367"; repStart "2327"; chr2 rmsk exon 172514810 172514857 460 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "2848"; repFamily "ERVK"; repLeft "-3989"; repStart "2806"; chr2 rmsk exon 172514891 172514944 460 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "2906"; repFamily "ERVK"; repLeft "-3931"; repStart "2849"; chr2 rmsk exon 172514937 172519268 31719 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2493"; chr2 rmsk exon 172519269 172519738 2689 + . gene_id "HML5_2q31.1b"; transcript_id "HML5_2q31.1b"; locus "HML5_2q31.1b"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0021"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### PABLB_2q31.1 ### chr2 rmsk gene 172520800 172524411 . - . gene_id "PABLB_2q31.1"; transcript_id "PABLB_2q31.1"; locus "PABLB_2q31.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0013"; model_cov "2586"; model_pct "36.3"; chr2 rmsk exon 172520800 172522480 2605 - . gene_id "PABLB_2q31.1"; transcript_id "PABLB_2q31.1"; locus "PABLB_2q31.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0013"; repClass "LTR"; repEnd "4288"; repFamily "ERV1"; repLeft "2571"; repStart "-2834"; chr2 rmsk exon 172522855 172522981 373 - . gene_id "PABLB_2q31.1"; transcript_id "PABLB_2q31.1"; locus "PABLB_2q31.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0013"; repClass "LTR"; repEnd "2119"; repFamily "ERV1"; repLeft "1992"; repStart "-5003"; chr2 rmsk exon 172523354 172523606 475 - . gene_id "PABLB_2q31.1"; transcript_id "PABLB_2q31.1"; locus "PABLB_2q31.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0013"; repClass "LTR"; repEnd "1717"; repFamily "ERV1"; repLeft "1466"; repStart "-5405"; chr2 rmsk exon 172523917 172524411 475 - . gene_id "PABLB_2q31.1"; transcript_id "PABLB_2q31.1"; locus "PABLB_2q31.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0013"; repClass "LTR"; repEnd "1465"; repFamily "ERV1"; repLeft "974"; repStart "-5657"; ### HUERSP1_2q31.1b ### chr2 rmsk gene 172530367 172531578 . - . gene_id "HUERSP1_2q31.1b"; transcript_id "HUERSP1_2q31.1b"; locus "HUERSP1_2q31.1b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0035"; model_cov "713"; model_pct "11.4"; chr2 rmsk exon 172530367 172530908 1055 - . gene_id "HUERSP1_2q31.1b"; transcript_id "HUERSP1_2q31.1b"; locus "HUERSP1_2q31.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0035"; repClass "LTR"; repEnd "714"; repFamily "ERV1"; repLeft "1"; repStart "-5549"; chr2 rmsk exon 172530909 172531578 2744 - . gene_id "HUERSP1_2q31.1b"; transcript_id "HUERSP1_2q31.1b"; locus "HUERSP1_2q31.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0035"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "30"; repStart "0"; ### MER41_2q31.1a ### chr2 rmsk gene 172536236 172536781 . + . gene_id "MER41_2q31.1a"; transcript_id "MER41_2q31.1a"; locus "MER41_2q31.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0068"; model_cov "819"; model_pct "13.8"; chr2 rmsk exon 172536236 172536781 2267 + . gene_id "MER41_2q31.1a"; transcript_id "MER41_2q31.1a"; locus "MER41_2q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0068"; repClass "LTR"; repEnd "1451"; repFamily "ERV1"; repLeft "-4495"; repStart "632"; ### MER61_2q31.1b ### chr2 rmsk gene 172537081 172542095 . + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0061"; model_cov "1693"; model_pct "32.5"; chr2 rmsk exon 172537081 172537159 661 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "42"; repFamily "ERV1"; repLeft "-5175"; repStart "-24"; chr2 rmsk exon 172539130 172539385 6478 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "-3396"; repStart "1781"; chr2 rmsk exon 172539671 172540072 6478 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "2218"; repFamily "ERV1"; repLeft "-2999"; repStart "1822"; chr2 rmsk exon 172540366 172541185 6478 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "3029"; repFamily "ERV1"; repLeft "-2188"; repStart "2219"; chr2 rmsk exon 172541488 172541550 6478 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "3089"; repFamily "ERV1"; repLeft "-2128"; repStart "3030"; chr2 rmsk exon 172541848 172542095 6478 + . gene_id "MER61_2q31.1b"; transcript_id "MER61_2q31.1b"; locus "MER61_2q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0061"; repClass "LTR"; repEnd "3213"; repFamily "ERV1"; repLeft "-2004"; repStart "2891"; ### HERVH_2q31.1c ### chr2 rmsk gene 172542098 172544286 . + . gene_id "HERVH_2q31.1c"; transcript_id "HERVH_2q31.1c"; locus "HERVH_2q31.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0181"; model_cov "2147"; model_pct "27.8"; chr2 rmsk exon 172542098 172542203 861 + . gene_id "HERVH_2q31.1c"; transcript_id "HERVH_2q31.1c"; locus "HERVH_2q31.1c"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_0181"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "346"; chr2 rmsk exon 172542204 172544286 13019 + . gene_id "HERVH_2q31.1c"; transcript_id "HERVH_2q31.1c"; locus "HERVH_2q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0181"; repClass "LTR"; repEnd "2148"; repFamily "ERV1"; repLeft "-5565"; repStart "1"; ### MER61_2q31.1c ### chr2 rmsk gene 172544914 172547572 . + . gene_id "MER61_2q31.1c"; transcript_id "MER61_2q31.1c"; locus "MER61_2q31.1c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0062"; model_cov "1977"; model_pct "37.9"; chr2 rmsk exon 172544914 172546726 10551 + . gene_id "MER61_2q31.1c"; transcript_id "MER61_2q31.1c"; locus "MER61_2q31.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0062"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-1224"; repStart "2242"; chr2 rmsk exon 172547339 172547572 10285 + . gene_id "MER61_2q31.1c"; transcript_id "MER61_2q31.1c"; locus "MER61_2q31.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0062"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4990"; ### ERVLE_2q31.1a ### chr2 rmsk gene 172588620 172589203 . - . gene_id "ERVLE_2q31.1a"; transcript_id "ERVLE_2q31.1a"; locus "ERVLE_2q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0573"; model_cov "605"; model_pct "10.7"; chr2 rmsk exon 172588620 172589203 696 - . gene_id "ERVLE_2q31.1a"; transcript_id "ERVLE_2q31.1a"; locus "ERVLE_2q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0573"; repClass "LTR"; repEnd "4102"; repFamily "ERVL"; repLeft "3497"; repStart "-1565"; ### ERV316A3_2q31.1a ### chr2 rmsk gene 172687450 172688867 . - . gene_id "ERV316A3_2q31.1a"; transcript_id "ERV316A3_2q31.1a"; locus "ERV316A3_2q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0343"; model_cov "894"; model_pct "17.1"; chr2 rmsk exon 172687450 172688361 3401 - . gene_id "ERV316A3_2q31.1a"; transcript_id "ERV316A3_2q31.1a"; locus "ERV316A3_2q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0343"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "4250"; repStart "-82"; chr2 rmsk exon 172688531 172688867 802 - . gene_id "ERV316A3_2q31.1a"; transcript_id "ERV316A3_2q31.1a"; locus "ERV316A3_2q31.1a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0343"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "35"; repStart "0"; ### ERVLE_2q31.1b ### chr2 rmsk gene 173119652 173124224 . - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0574"; model_cov "4039"; model_pct "71.3"; chr2 rmsk exon 173119652 173120013 357 - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0574"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5290"; repStart "0"; chr2 rmsk exon 173120114 173120698 3788 - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0574"; repClass "LTR"; repEnd "5301"; repFamily "ERVL"; repLeft "4713"; repStart "-366"; chr2 rmsk exon 173121007 173121391 3788 - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0574"; repClass "LTR"; repEnd "4712"; repFamily "ERVL"; repLeft "4321"; repStart "-955"; chr2 rmsk exon 173121686 173122371 3788 - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0574"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "3544"; repStart "-1347"; chr2 rmsk exon 173122375 173124224 3473 - . gene_id "ERVLE_2q31.1b"; transcript_id "ERVLE_2q31.1b"; locus "ERVLE_2q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0574"; repClass "LTR"; repEnd "1912"; repFamily "ERVL"; repLeft "5"; repStart "-3755"; ### LTR25_2q31.1 ### chr2 rmsk gene 173291779 173300177 . - . gene_id "LTR25_2q31.1"; transcript_id "LTR25_2q31.1"; locus "LTR25_2q31.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0019"; model_cov "7178"; model_pct "99.9"; chr2 rmsk exon 173291779 173293993 17796 - . gene_id "LTR25_2q31.1"; transcript_id "LTR25_2q31.1"; locus "LTR25_2q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0019"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "4961"; repStart "-2"; chr2 rmsk exon 173294291 173294320 17796 - . gene_id "LTR25_2q31.1"; transcript_id "LTR25_2q31.1"; locus "LTR25_2q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0019"; repClass "LTR"; repEnd "4960"; repFamily "ERV1"; repLeft "4953"; repStart "-2228"; chr2 rmsk exon 173294926 173295852 17796 - . gene_id "LTR25_2q31.1"; transcript_id "LTR25_2q31.1"; locus "LTR25_2q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0019"; repClass "LTR"; repEnd "4952"; repFamily "ERV1"; repLeft "4083"; repStart "-2236"; chr2 rmsk exon 173296177 173300177 17796 - . gene_id "LTR25_2q31.1"; transcript_id "LTR25_2q31.1"; locus "LTR25_2q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0019"; repClass "LTR"; repEnd "4082"; repFamily "ERV1"; repLeft "5"; repStart "-3106"; ### MER41_2q31.1b ### chr2 rmsk gene 173497760 173502877 . + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0070"; model_cov "4708"; model_pct "79.2"; chr2 rmsk exon 173497760 173497912 1050 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0070"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr2 rmsk exon 173497913 173498932 5359 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0070"; repClass "LTR"; repEnd "1057"; repFamily "ERV1"; repLeft "-4889"; repStart "1"; chr2 rmsk exon 173499258 173499854 2885 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0070"; repClass "LTR"; repEnd "1889"; repFamily "ERV1"; repLeft "-4057"; repStart "1335"; chr2 rmsk exon 173499842 173500000 908 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0070"; repClass "LTR"; repEnd "3464"; repFamily "ERV1"; repLeft "-2482"; repStart "3300"; chr2 rmsk exon 173500004 173500114 8394 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0070"; repClass "LTR"; repEnd "4043"; repFamily "ERV1"; repLeft "-1903"; repStart "3940"; chr2 rmsk exon 173500414 173502416 12299 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0070"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "3113"; chr2 rmsk exon 173502417 173502877 3080 + . gene_id "MER41_2q31.1b"; transcript_id "MER41_2q31.1b"; locus "MER41_2q31.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0070"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_2q31.1b ### chr2 rmsk gene 173774650 173781020 . - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0344"; model_cov "3287"; model_pct "62.9"; chr2 rmsk exon 173774650 173776593 5160 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "4901"; repFamily "ERVL"; repLeft "2941"; repStart "-325"; chr2 rmsk exon 173778911 173779772 2816 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "2833"; repFamily "ERVL"; repLeft "1985"; repStart "-2393"; chr2 rmsk exon 173779811 173780122 1091 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "2177"; repFamily "ERVL"; repLeft "1880"; repStart "-3049"; chr2 rmsk exon 173780257 173780432 544 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "648"; repStart "-4396"; chr2 rmsk exon 173780441 173780551 698 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "138"; repStart "-208"; chr2 rmsk exon 173780915 173781020 698 - . gene_id "ERV316A3_2q31.1b"; transcript_id "ERV316A3_2q31.1b"; locus "ERV316A3_2q31.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0344"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "26"; repStart "-314"; ### MER4B_2q31.1 ### chr2 rmsk gene 174500051 174503705 . - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0069"; model_cov "1016"; model_pct "15.0"; chr2 rmsk exon 174500051 174500916 5554 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4D0"; geneRegion "ltr"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "872"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 174500917 174501312 2002 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6352"; repStart "0"; chr2 rmsk exon 174501423 174501812 1773 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "5929"; repStart "-439"; chr2 rmsk exon 174501860 174501922 344 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "5321"; repFamily "ERV1"; repLeft "5262"; repStart "-1437"; chr2 rmsk exon 174503504 174503566 288 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "2583"; repFamily "ERV1"; repLeft "2521"; repStart "-4175"; chr2 rmsk exon 174503595 174503705 323 - . gene_id "MER4B_2q31.1"; transcript_id "MER4B_2q31.1"; locus "MER4B_2q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0069"; repClass "LTR"; repEnd "2516"; repFamily "ERV1"; repLeft "2417"; repStart "-4242"; ### ERVLB4_2q31.1 ### chr2 rmsk gene 174742999 174746543 . + . gene_id "ERVLB4_2q31.1"; transcript_id "ERVLB4_2q31.1"; locus "ERVLB4_2q31.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0247"; model_cov "3000"; model_pct "52.5"; chr2 rmsk exon 174742999 174745942 19301 + . gene_id "ERVLB4_2q31.1"; transcript_id "ERVLB4_2q31.1"; locus "ERVLB4_2q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0247"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "-3"; repStart "2711"; chr2 rmsk exon 174745946 174746396 2508 + . gene_id "ERVLB4_2q31.1"; transcript_id "ERVLB4_2q31.1"; locus "ERVLB4_2q31.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0247"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-85"; repStart "1"; chr2 rmsk exon 174746496 174746543 346 + . gene_id "ERVLB4_2q31.1"; transcript_id "ERVLB4_2q31.1"; locus "ERVLB4_2q31.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0247"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "507"; ### HERVW_2q31.1b ### chr2 rmsk gene 175325143 175326529 . + . gene_id "HERVW_2q31.1b"; transcript_id "HERVW_2q31.1b"; locus "HERVW_2q31.1b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0048"; model_cov "1089"; model_pct "12.6"; chr2 rmsk exon 175325143 175325441 2280 + . gene_id "HERVW_2q31.1b"; transcript_id "HERVW_2q31.1b"; locus "HERVW_2q31.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0048"; repClass "LTR"; repEnd "8004"; repFamily "ERV1"; repLeft "-622"; repStart "7694"; chr2 rmsk exon 175325433 175326199 5884 + . gene_id "HERVW_2q31.1b"; transcript_id "HERVW_2q31.1b"; locus "HERVW_2q31.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0048"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "-4"; repStart "7843"; chr2 rmsk exon 175326204 175326529 2607 + . gene_id "HERVW_2q31.1b"; transcript_id "HERVW_2q31.1b"; locus "HERVW_2q31.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0048"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_2q31.2 ### chr2 rmsk gene 177336793 177339616 . + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0576"; model_cov "2209"; model_pct "39.0"; chr2 rmsk exon 177336793 177337159 1279 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "803"; repFamily "ERVL"; repLeft "-4864"; repStart "406"; chr2 rmsk exon 177337445 177337889 1279 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "1250"; repFamily "ERVL"; repLeft "-4417"; repStart "804"; chr2 rmsk exon 177338016 177338476 1279 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "1830"; repFamily "ERVL"; repLeft "-3837"; repStart "1264"; chr2 rmsk exon 177338779 177338913 401 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "-2726"; repStart "2805"; chr2 rmsk exon 177338911 177339276 587 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "3674"; repFamily "ERVL"; repLeft "-1993"; repStart "3242"; chr2 rmsk exon 177339414 177339616 587 + . gene_id "ERVLE_2q31.2"; transcript_id "ERVLE_2q31.2"; locus "ERVLE_2q31.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0576"; repClass "LTR"; repEnd "3907"; repFamily "ERVL"; repLeft "-1760"; repStart "3675"; ### HERVW_2q31.2 ### chr2 rmsk gene 177409245 177413158 . - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0049"; model_cov "4574"; model_pct "53.0"; chr2 rmsk exon 177409245 177409573 2139 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr2 rmsk exon 177409574 177409858 2031 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 177409849 177409887 281 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 177409881 177411743 10289 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2480"; repStart "-2607"; chr2 rmsk exon 177411945 177412648 5274 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-7919"; chr2 rmsk exon 177412649 177413158 3681 - . gene_id "HERVW_2q31.2"; transcript_id "HERVW_2q31.2"; locus "HERVW_2q31.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0049"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HUERSP3B_2q31.2 ### chr2 rmsk gene 177834510 177837462 . + . gene_id "HUERSP3B_2q31.2"; transcript_id "HUERSP3B_2q31.2"; locus "HUERSP3B_2q31.2"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0022"; model_cov "1243"; model_pct "16.8"; chr2 rmsk exon 177834510 177835012 1207 + . gene_id "HUERSP3B_2q31.2"; transcript_id "HUERSP3B_2q31.2"; locus "HUERSP3B_2q31.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0022"; repClass "LTR"; repEnd "1277"; repFamily "ERV1"; repLeft "-6141"; repStart "508"; chr2 rmsk exon 177835010 177835498 2865 + . gene_id "HUERSP3B_2q31.2"; transcript_id "HUERSP3B_2q31.2"; locus "HUERSP3B_2q31.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0022"; repClass "LTR"; repEnd "2233"; repFamily "ERV1"; repLeft "-5185"; repStart "2170"; chr2 rmsk exon 177837021 177837462 2865 + . gene_id "HUERSP3B_2q31.2"; transcript_id "HUERSP3B_2q31.2"; locus "HUERSP3B_2q31.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0022"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "-4773"; repStart "2234"; ### ERV316A3_2q31.2 ### chr2 rmsk gene 178421097 178423900 . - . gene_id "ERV316A3_2q31.2"; transcript_id "ERV316A3_2q31.2"; locus "ERV316A3_2q31.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0345"; model_cov "2647"; model_pct "50.7"; chr2 rmsk exon 178421097 178421401 1049 - . gene_id "ERV316A3_2q31.2"; transcript_id "ERV316A3_2q31.2"; locus "ERV316A3_2q31.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0345"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "124"; repStart "0"; chr2 rmsk exon 178421402 178423900 3226 - . gene_id "ERV316A3_2q31.2"; transcript_id "ERV316A3_2q31.2"; locus "ERV316A3_2q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0345"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "2346"; repStart "-233"; ### HERVH_2q31.2 ### chr2 rmsk gene 179051587 179057323 . - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0182"; model_cov "5113"; model_pct "66.3"; chr2 rmsk exon 179051587 179051988 2506 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 179051992 179052364 2251 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7322"; repStart "-6"; chr2 rmsk exon 179052363 179052578 1381 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 179052580 179053241 4221 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4487"; repStart "-2564"; chr2 rmsk exon 179053243 179054094 6145 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr2 rmsk exon 179054074 179056929 15715 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr2 rmsk exon 179056938 179057323 1954 - . gene_id "HERVH_2q31.2"; transcript_id "HERVH_2q31.2"; locus "HERVH_2q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0182"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; ### HERVL_2q31.2 ### chr2 rmsk gene 179073490 179074439 . + . gene_id "HERVL_2q31.2"; transcript_id "HERVL_2q31.2"; locus "HERVL_2q31.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0192"; model_cov "612"; model_pct "10.8"; chr2 rmsk exon 179073490 179074093 3614 + . gene_id "HERVL_2q31.2"; transcript_id "HERVL_2q31.2"; locus "HERVL_2q31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0192"; repClass "LTR"; repEnd "617"; repFamily "ERVL"; repLeft "-5037"; repStart "5"; chr2 rmsk exon 179074094 179074439 991 + . gene_id "HERVL_2q31.2"; transcript_id "HERVL_2q31.2"; locus "HERVL_2q31.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0192"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "212"; ### MER41_2q31.2 ### chr2 rmsk gene 179469110 179471049 . + . gene_id "MER41_2q31.2"; transcript_id "MER41_2q31.2"; locus "MER41_2q31.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0071"; model_cov "1521"; model_pct "25.6"; chr2 rmsk exon 179469110 179469189 996 + . gene_id "MER41_2q31.2"; transcript_id "MER41_2q31.2"; locus "MER41_2q31.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0071"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "-86"; repStart "475"; chr2 rmsk exon 179469413 179469498 996 + . gene_id "MER41_2q31.2"; transcript_id "MER41_2q31.2"; locus "MER41_2q31.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0071"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "549"; chr2 rmsk exon 179469499 179471049 9940 + . gene_id "MER41_2q31.2"; transcript_id "MER41_2q31.2"; locus "MER41_2q31.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0071"; repClass "LTR"; repEnd "1522"; repFamily "ERV1"; repLeft "-4424"; repStart "1"; ### HERVL32_2q31.3 ### chr2 rmsk gene 179706005 179712066 . + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0007"; model_cov "2697"; model_pct "78.9"; chr2 rmsk exon 179706005 179706430 1965 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 179706431 179708113 8543 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "1622"; repFamily "ERVL"; repLeft "-1796"; repStart "1"; chr2 rmsk exon 179708443 179709290 8543 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "2429"; repFamily "ERVL"; repLeft "-989"; repStart "1623"; chr2 rmsk exon 179709294 179709355 254 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "2600"; repFamily "ERVL"; repLeft "-818"; repStart "2533"; chr2 rmsk exon 179711278 179711475 604 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "0"; repStart "3215"; chr2 rmsk exon 179711478 179711881 2023 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "-147"; repStart "1"; chr2 rmsk exon 179711908 179712066 2023 + . gene_id "HERVL32_2q31.3"; transcript_id "HERVL32_2q31.3"; locus "HERVL32_2q31.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0007"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "311"; ### ERV316A3_2q31.3a ### chr2 rmsk gene 180009041 180011335 . - . gene_id "ERV316A3_2q31.3a"; transcript_id "ERV316A3_2q31.3a"; locus "ERV316A3_2q31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0346"; model_cov "1942"; model_pct "37.2"; chr2 rmsk exon 180009041 180009086 323 - . gene_id "ERV316A3_2q31.3a"; transcript_id "ERV316A3_2q31.3a"; locus "ERV316A3_2q31.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0346"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "375"; repStart "-2"; chr2 rmsk exon 180009124 180009361 953 - . gene_id "ERV316A3_2q31.3a"; transcript_id "ERV316A3_2q31.3a"; locus "ERV316A3_2q31.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0346"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "1"; repStart "-175"; chr2 rmsk exon 180009378 180011335 16200 - . gene_id "ERV316A3_2q31.3a"; transcript_id "ERV316A3_2q31.3a"; locus "ERV316A3_2q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0346"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "3255"; repStart "-29"; ### ERV316A3_2q31.3b ### chr2 rmsk gene 180011383 180014127 . - . gene_id "ERV316A3_2q31.3b"; transcript_id "ERV316A3_2q31.3b"; locus "ERV316A3_2q31.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0347"; model_cov "2448"; model_pct "46.8"; chr2 rmsk exon 180011383 180013715 16200 - . gene_id "ERV316A3_2q31.3b"; transcript_id "ERV316A3_2q31.3b"; locus "ERV316A3_2q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0347"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "2880"; repStart "-29"; chr2 rmsk exon 180013732 180013864 360 - . gene_id "ERV316A3_2q31.3b"; transcript_id "ERV316A3_2q31.3b"; locus "ERV316A3_2q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0347"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "265"; repStart "-4830"; chr2 rmsk exon 180013901 180014127 1094 - . gene_id "ERV316A3_2q31.3b"; transcript_id "ERV316A3_2q31.3b"; locus "ERV316A3_2q31.3b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0347"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "193"; repStart "0"; ### HML1_2q31.3a ### chr2 rmsk gene 180056513 180057669 . + . gene_id "HML1_2q31.3a"; transcript_id "HML1_2q31.3a"; locus "HML1_2q31.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0013"; model_cov "783"; model_pct "12.8"; chr2 rmsk exon 180056513 180056559 284 + . gene_id "HML1_2q31.3a"; transcript_id "HML1_2q31.3a"; locus "HML1_2q31.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0013"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-562"; repStart "1"; chr2 rmsk exon 180056548 180056938 1615 + . gene_id "HML1_2q31.3a"; transcript_id "HML1_2q31.3a"; locus "HML1_2q31.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0013"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; chr2 rmsk exon 180056939 180057669 4739 + . gene_id "HML1_2q31.3a"; transcript_id "HML1_2q31.3a"; locus "HML1_2q31.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0013"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "-5312"; repStart "1"; ### HERVW_2q31.3a ### chr2 rmsk gene 180057712 180060299 . + . gene_id "HERVW_2q31.3a"; transcript_id "HERVW_2q31.3a"; locus "HERVW_2q31.3a"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0051"; model_cov "2702"; model_pct "31.3"; chr2 rmsk exon 180057712 180058830 7311 + . gene_id "HERVW_2q31.3a"; transcript_id "HERVW_2q31.3a"; locus "HERVW_2q31.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0051"; repClass "LTR"; repEnd "2009"; repFamily "ERV1"; repLeft "-6617"; repStart "835"; chr2 rmsk exon 180058821 180060250 9322 + . gene_id "HERVW_2q31.3a"; transcript_id "HERVW_2q31.3a"; locus "HERVW_2q31.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0051"; repClass "LTR"; repEnd "7163"; repFamily "ERV1"; repLeft "-1463"; repStart "5682"; chr2 rmsk exon 180060252 180060299 350 + . gene_id "HERVW_2q31.3a"; transcript_id "HERVW_2q31.3a"; locus "HERVW_2q31.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0051"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "434"; ### HML1_2q31.3b ### chr2 rmsk gene 180060300 180061494 . + . gene_id "HML1_2q31.3b"; transcript_id "HML1_2q31.3b"; locus "HML1_2q31.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0014"; model_cov "976"; model_pct "16.0"; chr2 rmsk exon 180060300 180060930 1713 + . gene_id "HML1_2q31.3b"; transcript_id "HML1_2q31.3b"; locus "HML1_2q31.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0014"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5036"; chr2 rmsk exon 180060996 180061082 359 + . gene_id "HML1_2q31.3b"; transcript_id "HML1_2q31.3b"; locus "HML1_2q31.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0014"; repClass "LTR"; repEnd "6083"; repFamily "ERVK"; repLeft "-13"; repStart "5968"; chr2 rmsk exon 180061093 180061494 1873 + . gene_id "HML1_2q31.3b"; transcript_id "HML1_2q31.3b"; locus "HML1_2q31.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0014"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### ERVLE_2q31.3a ### chr2 rmsk gene 180223296 180228654 . - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0578"; model_cov "3366"; model_pct "59.4"; chr2 rmsk exon 180223296 180223612 1236 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5362"; repStart "-1"; chr2 rmsk exon 180223691 180223968 1196 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "5060"; repStart "-325"; chr2 rmsk exon 180225699 180226739 6675 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "4815"; repFamily "ERVL"; repLeft "3741"; repStart "-852"; chr2 rmsk exon 180226979 180227863 6675 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "2787"; repStart "-1927"; chr2 rmsk exon 180227884 180228087 861 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "2729"; repFamily "ERVL"; repLeft "2519"; repStart "-2938"; chr2 rmsk exon 180228112 180228654 2118 - . gene_id "ERVLE_2q31.3a"; transcript_id "ERVLE_2q31.3a"; locus "ERVLE_2q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0578"; repClass "LTR"; repEnd "2449"; repFamily "ERVL"; repLeft "1906"; repStart "-3218"; ### HERVW_2q31.3b ### chr2 rmsk gene 180231677 180239319 . + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0052"; model_cov "3936"; model_pct "45.6"; chr2 rmsk exon 180231677 180232443 4970 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 180232468 180232763 2091 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-8309"; repStart "22"; chr2 rmsk exon 180232759 180233124 2980 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "1252"; repFamily "ERV1"; repLeft "-7374"; repStart "887"; chr2 rmsk exon 180234679 180235457 6188 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "1243"; chr2 rmsk exon 180235443 180236851 17372 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "3826"; repFamily "ERV1"; repLeft "-4800"; repStart "2430"; chr2 rmsk exon 180237438 180238191 17372 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "4578"; repFamily "ERV1"; repLeft "-4048"; repStart "3827"; chr2 rmsk exon 180238180 180238247 515 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "7545"; repFamily "ERV1"; repLeft "-1081"; repStart "7478"; chr2 rmsk exon 180238241 180238533 2290 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr2 rmsk exon 180238534 180239319 5090 + . gene_id "HERVW_2q31.3b"; transcript_id "HERVW_2q31.3b"; locus "HERVW_2q31.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0052"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_2q31.3 ### chr2 rmsk gene 180336418 180341470 . + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0063"; model_cov "4297"; model_pct "82.4"; chr2 rmsk exon 180336418 180336740 1825 + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0063"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 180336741 180337389 2467 + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0063"; repClass "LTR"; repEnd "738"; repFamily "ERV1"; repLeft "-4479"; repStart "1"; chr2 rmsk exon 180337387 180340770 22892 + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0063"; repClass "LTR"; repEnd "4863"; repFamily "ERV1"; repLeft "-354"; repStart "1655"; chr2 rmsk exon 180340820 180341149 22892 + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0063"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4864"; chr2 rmsk exon 180341150 180341470 1827 + . gene_id "MER61_2q31.3"; transcript_id "MER61_2q31.3"; locus "MER61_2q31.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0063"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_2q31.3c ### chr2 rmsk gene 180349279 180351665 . + . gene_id "ERV316A3_2q31.3c"; transcript_id "ERV316A3_2q31.3c"; locus "ERV316A3_2q31.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0348"; model_cov "1750"; model_pct "33.5"; chr2 rmsk exon 180349279 180350978 1819 + . gene_id "ERV316A3_2q31.3c"; transcript_id "ERV316A3_2q31.3c"; locus "ERV316A3_2q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0348"; repClass "LTR"; repEnd "5045"; repFamily "ERVL"; repLeft "-181"; repStart "3295"; chr2 rmsk exon 180351202 180351665 804 + . gene_id "ERV316A3_2q31.3c"; transcript_id "ERV316A3_2q31.3c"; locus "ERV316A3_2q31.3c"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0348"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "-2"; repStart "107"; ### ERV316A3_2q31.3d ### chr2 rmsk gene 180442409 180447600 . - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0349"; model_cov "3666"; model_pct "70.1"; chr2 rmsk exon 180442409 180442696 390 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "168"; repStart "-8"; chr2 rmsk exon 180443044 180443106 249 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "29"; repFamily "ERVL"; repLeft "-28"; repStart "-422"; chr2 rmsk exon 180443129 180444804 3774 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "5192"; repFamily "ERVL"; repLeft "3499"; repStart "-34"; chr2 rmsk exon 180444859 180445597 1771 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "2516"; repStart "-1967"; chr2 rmsk exon 180445631 180446272 2382 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "1552"; repFamily "ERVL"; repLeft "894"; repStart "-3674"; chr2 rmsk exon 180446579 180446653 2382 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "893"; repFamily "ERVL"; repLeft "825"; repStart "-4333"; chr2 rmsk exon 180446689 180447184 1052 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "743"; repFamily "ERVL"; repLeft "239"; repStart "-4483"; chr2 rmsk exon 180447209 180447600 1042 - . gene_id "ERV316A3_2q31.3d"; transcript_id "ERV316A3_2q31.3d"; locus "ERV316A3_2q31.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0349"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "1"; repStart "-32"; ### ERVLE_2q31.3b ### chr2 rmsk gene 181581043 181582395 . - . gene_id "ERVLE_2q31.3b"; transcript_id "ERVLE_2q31.3b"; locus "ERVLE_2q31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0579"; model_cov "1410"; model_pct "24.9"; chr2 rmsk exon 181581043 181581398 680 - . gene_id "ERVLE_2q31.3b"; transcript_id "ERVLE_2q31.3b"; locus "ERVLE_2q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0579"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "4668"; repStart "-635"; chr2 rmsk exon 181581461 181582168 1780 - . gene_id "ERVLE_2q31.3b"; transcript_id "ERVLE_2q31.3b"; locus "ERVLE_2q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0579"; repClass "LTR"; repEnd "4510"; repFamily "ERVL"; repLeft "3648"; repStart "-1157"; chr2 rmsk exon 181582222 181582395 481 - . gene_id "ERVLE_2q31.3b"; transcript_id "ERVLE_2q31.3b"; locus "ERVLE_2q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0579"; repClass "LTR"; repEnd "3655"; repFamily "ERVL"; repLeft "3471"; repStart "-2012"; ### ERVLB4_2q31.3 ### chr2 rmsk gene 181689377 181692173 . + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0249"; model_cov "1314"; model_pct "23.0"; chr2 rmsk exon 181689377 181689608 313 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "841"; repFamily "ERVL"; repLeft "-4873"; repStart "599"; chr2 rmsk exon 181689659 181690020 635 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "1280"; repFamily "ERVL"; repLeft "-4434"; repStart "913"; chr2 rmsk exon 181690370 181690738 882 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "2116"; repFamily "ERVL"; repLeft "-3598"; repStart "1727"; chr2 rmsk exon 181690836 181690901 268 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "2327"; repFamily "ERVL"; repLeft "-3387"; repStart "2259"; chr2 rmsk exon 181691663 181691764 261 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "2534"; repFamily "ERVL"; repLeft "-3180"; repStart "2432"; chr2 rmsk exon 181692030 181692173 359 + . gene_id "ERVLB4_2q31.3"; transcript_id "ERVLB4_2q31.3"; locus "ERVLB4_2q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0249"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "-2770"; repStart "2798"; ### ERV316A3_2q31.3e ### chr2 rmsk gene 181728304 181730530 . - . gene_id "ERV316A3_2q31.3e"; transcript_id "ERV316A3_2q31.3e"; locus "ERV316A3_2q31.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0350"; model_cov "1746"; model_pct "33.4"; chr2 rmsk exon 181728304 181728744 2017 - . gene_id "ERV316A3_2q31.3e"; transcript_id "ERV316A3_2q31.3e"; locus "ERV316A3_2q31.3e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0350"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "27"; repStart "0"; chr2 rmsk exon 181728755 181730530 3902 - . gene_id "ERV316A3_2q31.3e"; transcript_id "ERV316A3_2q31.3e"; locus "ERV316A3_2q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0350"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3480"; repStart "0"; ### ERVLB4_2q32.1a ### chr2 rmsk gene 182160251 182166729 . + . gene_id "ERVLB4_2q32.1a"; transcript_id "ERVLB4_2q32.1a"; locus "ERVLB4_2q32.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0250"; model_cov "5508"; model_pct "96.4"; chr2 rmsk exon 182160251 182160828 1694 + . gene_id "ERVLB4_2q32.1a"; transcript_id "ERVLB4_2q32.1a"; locus "ERVLB4_2q32.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0250"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 182160834 182164361 19981 + . gene_id "ERVLB4_2q32.1a"; transcript_id "ERVLB4_2q32.1a"; locus "ERVLB4_2q32.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0250"; repClass "LTR"; repEnd "3650"; repFamily "ERVL"; repLeft "-2064"; repStart "6"; chr2 rmsk exon 182164341 182166131 10344 + . gene_id "ERVLB4_2q32.1a"; transcript_id "ERVLB4_2q32.1a"; locus "ERVLB4_2q32.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0250"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3850"; chr2 rmsk exon 182166132 182166729 2074 + . gene_id "ERVLB4_2q32.1a"; transcript_id "ERVLB4_2q32.1a"; locus "ERVLB4_2q32.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0250"; repClass "LTR"; repEnd "551"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERV316A3_2q32.1a ### chr2 rmsk gene 182297786 182302304 . + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0352"; model_cov "3189"; model_pct "61.0"; chr2 rmsk exon 182297786 182297940 619 + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0352"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "-113"; repStart "215"; chr2 rmsk exon 182298486 182298862 539 + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0352"; repClass "LTR"; repEnd "937"; repFamily "ERVL"; repLeft "-4289"; repStart "539"; chr2 rmsk exon 182299156 182300152 2479 + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0352"; repClass "LTR"; repEnd "3219"; repFamily "ERVL"; repLeft "-2007"; repStart "2196"; chr2 rmsk exon 182300310 182302014 2484 + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0352"; repClass "LTR"; repEnd "5131"; repFamily "ERVL"; repLeft "-95"; repStart "3363"; chr2 rmsk exon 182302134 182302304 610 + . gene_id "ERV316A3_2q32.1a"; transcript_id "ERV316A3_2q32.1a"; locus "ERV316A3_2q32.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0352"; repClass "LTR"; repEnd "197"; repFamily "ERVL"; repLeft "-292"; repStart "24"; ### HERVL_2q32.1a ### chr2 rmsk gene 182389638 182396841 . + . gene_id "HERVL_2q32.1a"; transcript_id "HERVL_2q32.1a"; locus "HERVL_2q32.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0193"; model_cov "4296"; model_pct "76.0"; chr2 rmsk exon 182389638 182390182 2008 + . gene_id "HERVL_2q32.1a"; transcript_id "HERVL_2q32.1a"; locus "HERVL_2q32.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0193"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr2 rmsk exon 182390183 182392104 25975 + . gene_id "HERVL_2q32.1a"; transcript_id "HERVL_2q32.1a"; locus "HERVL_2q32.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0193"; repClass "LTR"; repEnd "1894"; repFamily "ERVL"; repLeft "-3760"; repStart "1"; chr2 rmsk exon 182394507 182396445 25975 + . gene_id "HERVL_2q32.1a"; transcript_id "HERVL_2q32.1a"; locus "HERVL_2q32.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0193"; repClass "LTR"; repEnd "3905"; repFamily "ERVL"; repLeft "-1749"; repStart "1895"; chr2 rmsk exon 182396445 182396841 2862 + . gene_id "HERVL_2q32.1a"; transcript_id "HERVL_2q32.1a"; locus "HERVL_2q32.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0193"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5261"; ### HERVL_2q32.1b ### chr2 rmsk gene 182573805 182575634 . - . gene_id "HERVL_2q32.1b"; transcript_id "HERVL_2q32.1b"; locus "HERVL_2q32.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0194"; model_cov "944"; model_pct "16.7"; chr2 rmsk exon 182573805 182573838 2730 - . gene_id "HERVL_2q32.1b"; transcript_id "HERVL_2q32.1b"; locus "HERVL_2q32.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0194"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "413"; repStart "-2"; chr2 rmsk exon 182573965 182574378 2730 - . gene_id "HERVL_2q32.1b"; transcript_id "HERVL_2q32.1b"; locus "HERVL_2q32.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0194"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "1"; repStart "-32"; chr2 rmsk exon 182574379 182574681 6913 - . gene_id "HERVL_2q32.1b"; transcript_id "HERVL_2q32.1b"; locus "HERVL_2q32.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0194"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5342"; repStart "0"; chr2 rmsk exon 182574990 182575634 6913 - . gene_id "HERVL_2q32.1b"; transcript_id "HERVL_2q32.1b"; locus "HERVL_2q32.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0194"; repClass "LTR"; repEnd "5341"; repFamily "ERVL"; repLeft "4709"; repStart "-313"; ### ERVLE_2q32.1a ### chr2 rmsk gene 182652741 182655617 . - . gene_id "ERVLE_2q32.1a"; transcript_id "ERVLE_2q32.1a"; locus "ERVLE_2q32.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0580"; model_cov "2943"; model_pct "51.9"; chr2 rmsk exon 182652741 182653373 454 - . gene_id "ERVLE_2q32.1a"; transcript_id "ERVLE_2q32.1a"; locus "ERVLE_2q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0580"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "4596"; repStart "-406"; chr2 rmsk exon 182653419 182653825 739 - . gene_id "ERVLE_2q32.1a"; transcript_id "ERVLE_2q32.1a"; locus "ERVLE_2q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0580"; repClass "LTR"; repEnd "4799"; repFamily "ERVL"; repLeft "4361"; repStart "-868"; chr2 rmsk exon 182653830 182654408 1233 - . gene_id "ERVLE_2q32.1a"; transcript_id "ERVLE_2q32.1a"; locus "ERVLE_2q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0580"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "2202"; repStart "-2891"; chr2 rmsk exon 182654435 182655617 1094 - . gene_id "ERVLE_2q32.1a"; transcript_id "ERVLE_2q32.1a"; locus "ERVLE_2q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0580"; repClass "LTR"; repEnd "2016"; repFamily "ERVL"; repLeft "750"; repStart "-3651"; ### ERVLE_2q32.1b ### chr2 rmsk gene 182666678 182667641 . - . gene_id "ERVLE_2q32.1b"; transcript_id "ERVLE_2q32.1b"; locus "ERVLE_2q32.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0581"; model_cov "1128"; model_pct "19.9"; chr2 rmsk exon 182666678 182666917 327 - . gene_id "ERVLE_2q32.1b"; transcript_id "ERVLE_2q32.1b"; locus "ERVLE_2q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0581"; repClass "LTR"; repEnd "2115"; repFamily "ERVL"; repLeft "1710"; repStart "-3552"; chr2 rmsk exon 182666919 182667641 2149 - . gene_id "ERVLE_2q32.1b"; transcript_id "ERVLE_2q32.1b"; locus "ERVLE_2q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0581"; repClass "LTR"; repEnd "1867"; repFamily "ERVL"; repLeft "1144"; repStart "-3800"; ### HML5_2q32.1 ### chr2 rmsk gene 182764057 182766359 . - . gene_id "HML5_2q32.1"; transcript_id "HML5_2q32.1"; locus "HML5_2q32.1"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0022"; model_cov "1061"; model_pct "15.5"; chr2 rmsk exon 182764057 182764592 478 - . gene_id "HML5_2q32.1"; transcript_id "HML5_2q32.1"; locus "HML5_2q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0022"; repClass "LTR"; repEnd "6522"; repFamily "ERVK"; repLeft "5983"; repStart "-315"; chr2 rmsk exon 182765700 182765890 282 - . gene_id "HML5_2q32.1"; transcript_id "HML5_2q32.1"; locus "HML5_2q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0022"; repClass "LTR"; repEnd "4381"; repFamily "ERVK"; repLeft "4004"; repStart "-2456"; chr2 rmsk exon 182766030 182766088 253 - . gene_id "HML5_2q32.1"; transcript_id "HML5_2q32.1"; locus "HML5_2q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0022"; repClass "LTR"; repEnd "4047"; repFamily "ERVK"; repLeft "3989"; repStart "-2790"; chr2 rmsk exon 182766272 182766359 297 - . gene_id "HML5_2q32.1"; transcript_id "HML5_2q32.1"; locus "HML5_2q32.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0022"; repClass "LTR"; repEnd "3834"; repFamily "ERVK"; repLeft "3747"; repStart "-3003"; ### HERVH_2q32.1a ### chr2 rmsk gene 183044186 183049650 . + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0183"; model_cov "5246"; model_pct "68.0"; chr2 rmsk exon 183044186 183044479 2230 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "133"; chr2 rmsk exon 183044482 183047315 14031 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "-4709"; repStart "1"; chr2 rmsk exon 183047286 183047854 3165 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3140"; chr2 rmsk exon 183047848 183048877 7031 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "5847"; repFamily "ERV1"; repLeft "-1866"; repStart "4617"; chr2 rmsk exon 183048857 183049276 3007 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7296"; chr2 rmsk exon 183049277 183049650 2362 + . gene_id "HERVH_2q32.1a"; transcript_id "HERVH_2q32.1a"; locus "HERVH_2q32.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0183"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_2q32.1 ### chr2 rmsk gene 183050272 183053767 . - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0033"; model_cov "2485"; model_pct "41.3"; chr2 rmsk exon 183050272 183050779 4028 - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0033"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 183050780 183051893 8814 - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0033"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4904"; repStart "0"; chr2 rmsk exon 183051894 183052683 6708 - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0033"; repClass "LTR"; repEnd "2225"; repFamily "ERVK"; repLeft "1436"; repStart "-3796"; chr2 rmsk exon 183052682 183053254 4428 - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0033"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr2 rmsk exon 183053255 183053767 4167 - . gene_id "HML3_2q32.1"; transcript_id "HML3_2q32.1"; locus "HML3_2q32.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0033"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_2q32.1c ### chr2 rmsk gene 183163953 183165191 . - . gene_id "ERVLE_2q32.1c"; transcript_id "ERVLE_2q32.1c"; locus "ERVLE_2q32.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0582"; model_cov "1110"; model_pct "19.6"; chr2 rmsk exon 183163953 183164227 489 - . gene_id "ERVLE_2q32.1c"; transcript_id "ERVLE_2q32.1c"; locus "ERVLE_2q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0582"; repClass "LTR"; repEnd "3750"; repFamily "ERVL"; repLeft "3459"; repStart "-1917"; chr2 rmsk exon 183164239 183164886 1381 - . gene_id "ERVLE_2q32.1c"; transcript_id "ERVLE_2q32.1c"; locus "ERVLE_2q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0582"; repClass "LTR"; repEnd "3428"; repFamily "ERVL"; repLeft "2618"; repStart "-2239"; chr2 rmsk exon 183165181 183165191 1381 - . gene_id "ERVLE_2q32.1c"; transcript_id "ERVLE_2q32.1c"; locus "ERVLE_2q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0582"; repClass "LTR"; repEnd "2704"; repFamily "ERVL"; repLeft "2695"; repStart "-2963"; ### ERV316A3_2q32.1b ### chr2 rmsk gene 183724981 183728338 . - . gene_id "ERV316A3_2q32.1b"; transcript_id "ERV316A3_2q32.1b"; locus "ERV316A3_2q32.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0353"; model_cov "1734"; model_pct "33.2"; chr2 rmsk exon 183724981 183725313 745 - . gene_id "ERV316A3_2q32.1b"; transcript_id "ERV316A3_2q32.1b"; locus "ERV316A3_2q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0353"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "4454"; repStart "-433"; chr2 rmsk exon 183726424 183726578 393 - . gene_id "ERV316A3_2q32.1b"; transcript_id "ERV316A3_2q32.1b"; locus "ERV316A3_2q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0353"; repClass "LTR"; repEnd "4443"; repFamily "ERVL"; repLeft "4287"; repStart "-783"; chr2 rmsk exon 183727078 183728069 1476 - . gene_id "ERV316A3_2q32.1b"; transcript_id "ERV316A3_2q32.1b"; locus "ERV316A3_2q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0353"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "2119"; repStart "-2129"; chr2 rmsk exon 183728080 183728338 475 - . gene_id "ERV316A3_2q32.1b"; transcript_id "ERV316A3_2q32.1b"; locus "ERV316A3_2q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0353"; repClass "LTR"; repEnd "1516"; repFamily "ERVL"; repLeft "1255"; repStart "-3710"; ### ERV316A3_2q32.1c ### chr2 rmsk gene 184277439 184280012 . - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0355"; model_cov "1641"; model_pct "31.4"; chr2 rmsk exon 184277439 184277583 486 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "286"; repStart "0"; chr2 rmsk exon 184277707 184277871 326 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "4204"; repStart "-842"; chr2 rmsk exon 184277868 184278467 1304 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "3181"; repStart "-1426"; chr2 rmsk exon 184278508 184278657 292 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "3025"; repFamily "ERVL"; repLeft "2890"; repStart "-2201"; chr2 rmsk exon 184279061 184279545 1140 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "2876"; repFamily "ERVL"; repLeft "2400"; repStart "-2350"; chr2 rmsk exon 184279749 184280012 426 - . gene_id "ERV316A3_2q32.1c"; transcript_id "ERV316A3_2q32.1c"; locus "ERV316A3_2q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0355"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "1757"; repStart "-3238"; ### ERV316A3_2q32.1d ### chr2 rmsk gene 184451658 184452712 . - . gene_id "ERV316A3_2q32.1d"; transcript_id "ERV316A3_2q32.1d"; locus "ERV316A3_2q32.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0356"; model_cov "927"; model_pct "17.7"; chr2 rmsk exon 184451658 184452450 1092 - . gene_id "ERV316A3_2q32.1d"; transcript_id "ERV316A3_2q32.1d"; locus "ERV316A3_2q32.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0356"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "2916"; repStart "-1486"; chr2 rmsk exon 184452611 184452712 319 - . gene_id "ERV316A3_2q32.1d"; transcript_id "ERV316A3_2q32.1d"; locus "ERV316A3_2q32.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0356"; repClass "LTR"; repEnd "3128"; repFamily "ERVL"; repLeft "3025"; repStart "-2098"; ### HERVL_2q32.1c ### chr2 rmsk gene 184558907 184562855 . + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0196"; model_cov "2041"; model_pct "36.1"; chr2 rmsk exon 184558907 184558957 385 + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0196"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "-402"; repStart "1"; chr2 rmsk exon 184558958 184559984 7031 + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0196"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-1010"; repStart "3616"; chr2 rmsk exon 184560990 184561709 7102 + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0196"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "-292"; repStart "4639"; chr2 rmsk exon 184562018 184562310 7102 + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0196"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5363"; chr2 rmsk exon 184562312 184562855 1907 + . gene_id "HERVL_2q32.1c"; transcript_id "HERVL_2q32.1c"; locus "HERVL_2q32.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0196"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-96"; ### ERVLB4_2q32.1b ### chr2 rmsk gene 184705883 184706560 . - . gene_id "ERVLB4_2q32.1b"; transcript_id "ERVLB4_2q32.1b"; locus "ERVLB4_2q32.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0251"; model_cov "754"; model_pct "13.2"; chr2 rmsk exon 184705883 184706560 1878 - . gene_id "ERVLB4_2q32.1b"; transcript_id "ERVLB4_2q32.1b"; locus "ERVLB4_2q32.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0251"; repClass "LTR"; repEnd "4146"; repFamily "ERVL"; repLeft "3392"; repStart "-1568"; ### ERVLB4_2q32.1c ### chr2 rmsk gene 184916980 184920237 . - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0252"; model_cov "2109"; model_pct "36.9"; chr2 rmsk exon 184916980 184917159 1176 - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0252"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "1"; repStart "-232"; chr2 rmsk exon 184917160 184917481 1578 - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0252"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5386"; repStart "0"; chr2 rmsk exon 184917825 184918597 4220 - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0252"; repClass "LTR"; repEnd "5374"; repFamily "ERVL"; repLeft "4604"; repStart "-340"; chr2 rmsk exon 184918957 184919833 5235 - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0252"; repClass "LTR"; repEnd "4618"; repFamily "ERVL"; repLeft "3702"; repStart "-1096"; chr2 rmsk exon 184920142 184920237 5235 - . gene_id "ERVLB4_2q32.1c"; transcript_id "ERVLB4_2q32.1c"; locus "ERVLB4_2q32.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0252"; repClass "LTR"; repEnd "3701"; repFamily "ERVL"; repLeft "3606"; repStart "-2013"; ### MER61_2q32.1a ### chr2 rmsk gene 185012511 185015146 . + . gene_id "MER61_2q32.1a"; transcript_id "MER61_2q32.1a"; locus "MER61_2q32.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0064"; model_cov "3332"; model_pct "63.9"; chr2 rmsk exon 185012511 185012840 1531 + . gene_id "MER61_2q32.1a"; transcript_id "MER61_2q32.1a"; locus "MER61_2q32.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0064"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 185012841 185013512 2907 + . gene_id "MER61_2q32.1a"; transcript_id "MER61_2q32.1a"; locus "MER61_2q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0064"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr2 rmsk exon 185013545 185013587 326 + . gene_id "MER61_2q32.1a"; transcript_id "MER61_2q32.1a"; locus "MER61_2q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0064"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr2 rmsk exon 185013585 185015146 6045 + . gene_id "MER61_2q32.1a"; transcript_id "MER61_2q32.1a"; locus "MER61_2q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0064"; repClass "LTR"; repEnd "4194"; repFamily "ERV1"; repLeft "-1023"; repStart "1610"; ### ERV316A3_2q32.1e ### chr2 rmsk gene 185209066 185210600 . + . gene_id "ERV316A3_2q32.1e"; transcript_id "ERV316A3_2q32.1e"; locus "ERV316A3_2q32.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0359"; model_cov "1120"; model_pct "21.4"; chr2 rmsk exon 185209066 185210189 2701 + . gene_id "ERV316A3_2q32.1e"; transcript_id "ERV316A3_2q32.1e"; locus "ERV316A3_2q32.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0359"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4104"; chr2 rmsk exon 185210192 185210600 788 + . gene_id "ERV316A3_2q32.1e"; transcript_id "ERV316A3_2q32.1e"; locus "ERV316A3_2q32.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0359"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "2"; ### MER34B_2q32.1 ### chr2 rmsk gene 185255273 185256426 . + . gene_id "MER34B_2q32.1"; transcript_id "MER34B_2q32.1"; locus "MER34B_2q32.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0048"; model_cov "797"; model_pct "14.9"; chr2 rmsk exon 185255273 185255993 1472 + . gene_id "MER34B_2q32.1"; transcript_id "MER34B_2q32.1"; locus "MER34B_2q32.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0048"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-4701"; repStart "42"; chr2 rmsk exon 185256019 185256083 1011 + . gene_id "MER34B_2q32.1"; transcript_id "MER34B_2q32.1"; locus "MER34B_2q32.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0048"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "-4603"; repStart "686"; chr2 rmsk exon 185256320 185256426 362 + . gene_id "MER34B_2q32.1"; transcript_id "MER34B_2q32.1"; locus "MER34B_2q32.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0048"; repClass "LTR"; repEnd "1054"; repFamily "ERV1"; repLeft "-4302"; repStart "937"; ### ERVLE_2q32.1d ### chr2 rmsk gene 185313543 185314479 . + . gene_id "ERVLE_2q32.1d"; transcript_id "ERVLE_2q32.1d"; locus "ERVLE_2q32.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0584"; model_cov "948"; model_pct "16.7"; chr2 rmsk exon 185313543 185313994 1952 + . gene_id "ERVLE_2q32.1d"; transcript_id "ERVLE_2q32.1d"; locus "ERVLE_2q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0584"; repClass "LTR"; repEnd "856"; repFamily "ERVL"; repLeft "-4811"; repStart "387"; chr2 rmsk exon 185314040 185314105 1952 + . gene_id "ERVLE_2q32.1d"; transcript_id "ERVLE_2q32.1d"; locus "ERVLE_2q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0584"; repClass "LTR"; repEnd "930"; repFamily "ERVL"; repLeft "-4737"; repStart "857"; chr2 rmsk exon 185314098 185314479 1489 + . gene_id "ERVLE_2q32.1d"; transcript_id "ERVLE_2q32.1d"; locus "ERVLE_2q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0584"; repClass "LTR"; repEnd "1843"; repFamily "ERVL"; repLeft "-3824"; repStart "1437"; ### HERVL_2q32.1d ### chr2 rmsk gene 185360423 185366274 . - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0199"; model_cov "5251"; model_pct "92.9"; chr2 rmsk exon 185360423 185360470 283 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "354"; repStart "-40"; chr2 rmsk exon 185360470 185360660 1547 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "191"; repFamily "ERVL"; repLeft "1"; repStart "-253"; chr2 rmsk exon 185360661 185362082 10638 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4220"; repStart "0"; chr2 rmsk exon 185362073 185365423 22480 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "3819"; repFamily "ERVL"; repLeft "474"; repStart "-1835"; chr2 rmsk exon 185365728 185366220 22480 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "1"; repStart "-5181"; chr2 rmsk exon 185366221 185366274 429 - . gene_id "HERVL_2q32.1d"; transcript_id "HERVL_2q32.1d"; locus "HERVL_2q32.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0199"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "391"; repStart "0"; ### MER61_2q32.1c ### chr2 rmsk gene 185628851 185630832 . - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; category "insert*"; intModel "MER61-int"; locid "MER61-int_0065"; model_cov "761"; model_pct "14.6"; chr2 rmsk exon 185628851 185629191 2343 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0065"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 185629192 185629746 3646 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0065"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "4629"; repStart "-1"; chr2 rmsk exon 185629746 185629781 287 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0065"; prev_strand "+"; repClass "LTR"; repEnd "3302"; repFamily "ERV1"; repLeft "-1915"; repStart "3267"; chr2 rmsk exon 185629830 185630325 3475 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0065"; prev_strand "+"; repClass "LTR"; repEnd "3870"; repFamily "ERV1"; repLeft "-1347"; repStart "3359"; chr2 rmsk exon 185630325 185630495 905 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0065"; repClass "LTR"; repEnd "175"; repFamily "ERV1"; repLeft "1"; repStart "-5042"; chr2 rmsk exon 185630496 185630832 2358 - . gene_id "MER61_2q32.1c"; transcript_id "MER61_2q32.1c"; locus "MER61_2q32.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0065"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_2q32.1 ### chr2 rmsk gene 185676795 185680471 . - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0114"; model_cov "3151"; model_pct "47.8"; chr2 rmsk exon 185676795 185677460 3240 - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0114"; repClass "LTR"; repEnd "3429"; repFamily "ERV1"; repLeft "2727"; repStart "-3169"; chr2 rmsk exon 185677683 185679003 9361 - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0114"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1112"; repStart "-4103"; chr2 rmsk exon 185679033 185679277 9361 - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0114"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "865"; repStart "-5487"; chr2 rmsk exon 185679351 185680025 3310 - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0114"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "3"; repStart "-5775"; chr2 rmsk exon 185680031 185680471 2892 - . gene_id "MER4_2q32.1"; transcript_id "MER4_2q32.1"; locus "MER4_2q32.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0114"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLB4_2q32.1d ### chr2 rmsk gene 185695746 185700208 . + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0253"; model_cov "3005"; model_pct "52.6"; chr2 rmsk exon 185695746 185696075 503 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-691"; repStart "4719"; chr2 rmsk exon 185696667 185696728 528 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "-447"; repStart "6"; chr2 rmsk exon 185696967 185696981 528 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "81"; repFamily "ERVL"; repLeft "-434"; repStart "69"; chr2 rmsk exon 185696982 185699636 13609 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3013"; chr2 rmsk exon 185699637 185700087 1847 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-40"; repStart "-80"; chr2 rmsk exon 185700154 185700208 318 + . gene_id "ERVLB4_2q32.1d"; transcript_id "ERVLB4_2q32.1d"; locus "ERVLB4_2q32.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0253"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "462"; ### ERVLE_2q32.1e ### chr2 rmsk gene 185942735 185943726 . + . gene_id "ERVLE_2q32.1e"; transcript_id "ERVLE_2q32.1e"; locus "ERVLE_2q32.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0586"; model_cov "607"; model_pct "10.7"; chr2 rmsk exon 185942735 185942778 247 + . gene_id "ERVLE_2q32.1e"; transcript_id "ERVLE_2q32.1e"; locus "ERVLE_2q32.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0586"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "618"; chr2 rmsk exon 185942784 185942860 1455 + . gene_id "ERVLE_2q32.1e"; transcript_id "ERVLE_2q32.1e"; locus "ERVLE_2q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0586"; repClass "LTR"; repEnd "33"; repFamily "ERVL"; repLeft "-5634"; repStart "-43"; chr2 rmsk exon 185943212 185943726 1643 + . gene_id "ERVLE_2q32.1e"; transcript_id "ERVLE_2q32.1e"; locus "ERVLE_2q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0586"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-5121"; repStart "15"; ### HUERSP3_2q32.1 ### chr2 rmsk gene 185963079 185965965 . - . gene_id "HUERSP3_2q32.1"; transcript_id "HUERSP3_2q32.1"; locus "HUERSP3_2q32.1"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0028"; model_cov "2260"; model_pct "25.3"; chr2 rmsk exon 185963079 185963691 2784 - . gene_id "HUERSP3_2q32.1"; transcript_id "HUERSP3_2q32.1"; locus "HUERSP3_2q32.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0028"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 185963692 185965965 14394 - . gene_id "HUERSP3_2q32.1"; transcript_id "HUERSP3_2q32.1"; locus "HUERSP3_2q32.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0028"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "6658"; repStart "-1"; ### ERVLE_2q32.1f ### chr2 rmsk gene 185993085 185993833 . - . gene_id "ERVLE_2q32.1f"; transcript_id "ERVLE_2q32.1f"; locus "ERVLE_2q32.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0587"; model_cov "712"; model_pct "12.6"; chr2 rmsk exon 185993085 185993203 365 - . gene_id "ERVLE_2q32.1f"; transcript_id "ERVLE_2q32.1f"; locus "ERVLE_2q32.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0587"; repClass "LTR"; repEnd "5076"; repFamily "ERVL"; repLeft "4957"; repStart "-591"; chr2 rmsk exon 185993277 185993833 1174 - . gene_id "ERVLE_2q32.1f"; transcript_id "ERVLE_2q32.1f"; locus "ERVLE_2q32.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0587"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "4263"; repStart "-811"; ### ERV316A3_2q32.1f ### chr2 rmsk gene 185994150 185996442 . + . gene_id "ERV316A3_2q32.1f"; transcript_id "ERV316A3_2q32.1f"; locus "ERV316A3_2q32.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0361"; model_cov "1631"; model_pct "31.2"; chr2 rmsk exon 185994150 185995747 2169 + . gene_id "ERV316A3_2q32.1f"; transcript_id "ERV316A3_2q32.1f"; locus "ERV316A3_2q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0361"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "-2891"; repStart "704"; chr2 rmsk exon 185996050 185996442 1051 + . gene_id "ERV316A3_2q32.1f"; transcript_id "ERV316A3_2q32.1f"; locus "ERV316A3_2q32.1f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0361"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "10"; ### ERVLB4_2q32.1e ### chr2 rmsk gene 186263672 186265173 . + . gene_id "ERVLB4_2q32.1e"; transcript_id "ERVLB4_2q32.1e"; locus "ERVLB4_2q32.1e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0255"; model_cov "1446"; model_pct "25.3"; chr2 rmsk exon 186263672 186263755 389 + . gene_id "ERVLB4_2q32.1e"; transcript_id "ERVLB4_2q32.1e"; locus "ERVLB4_2q32.1e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0255"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-205"; repStart "268"; chr2 rmsk exon 186263759 186265173 8585 + . gene_id "ERVLB4_2q32.1e"; transcript_id "ERVLB4_2q32.1e"; locus "ERVLB4_2q32.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0255"; repClass "LTR"; repEnd "2164"; repFamily "ERVL"; repLeft "-3550"; repStart "718"; ### HERVL_2q32.1e ### chr2 rmsk gene 186409559 186415438 . - . gene_id "HERVL_2q32.1e"; transcript_id "HERVL_2q32.1e"; locus "HERVL_2q32.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0200"; model_cov "4999"; model_pct "88.4"; chr2 rmsk exon 186409559 186410007 3099 - . gene_id "HERVL_2q32.1e"; transcript_id "HERVL_2q32.1e"; locus "HERVL_2q32.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0200"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 186410008 186412339 18338 - . gene_id "HERVL_2q32.1e"; transcript_id "HERVL_2q32.1e"; locus "HERVL_2q32.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0200"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3291"; repStart "0"; chr2 rmsk exon 186412339 186414954 20361 - . gene_id "HERVL_2q32.1e"; transcript_id "HERVL_2q32.1e"; locus "HERVL_2q32.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0200"; repClass "LTR"; repEnd "2637"; repFamily "ERVL"; repLeft "1"; repStart "-3017"; chr2 rmsk exon 186414955 186415438 3140 - . gene_id "HERVL_2q32.1e"; transcript_id "HERVL_2q32.1e"; locus "HERVL_2q32.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0200"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL18_2q32.1 ### chr2 rmsk gene 186431386 186438154 . + . gene_id "HERVL18_2q32.1"; transcript_id "HERVL18_2q32.1"; locus "HERVL18_2q32.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0028"; model_cov "6005"; model_pct "99.3"; chr2 rmsk exon 186431386 186431724 2344 + . gene_id "HERVL18_2q32.1"; transcript_id "HERVL18_2q32.1"; locus "HERVL18_2q32.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0028"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 186431739 186437781 36130 + . gene_id "HERVL18_2q32.1"; transcript_id "HERVL18_2q32.1"; locus "HERVL18_2q32.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0028"; repClass "LTR"; repEnd "6014"; repFamily "ERVL"; repLeft "-33"; repStart "9"; chr2 rmsk exon 186437816 186438154 2128 + . gene_id "HERVL18_2q32.1"; transcript_id "HERVL18_2q32.1"; locus "HERVL18_2q32.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0028"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_2q32.1g ### chr2 rmsk gene 186820717 186824937 . + . gene_id "ERV316A3_2q32.1g"; transcript_id "ERV316A3_2q32.1g"; locus "ERV316A3_2q32.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0362"; model_cov "3385"; model_pct "64.8"; chr2 rmsk exon 186820717 186820946 570 + . gene_id "ERV316A3_2q32.1g"; transcript_id "ERV316A3_2q32.1g"; locus "ERV316A3_2q32.1g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0362"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-218"; repStart "1"; chr2 rmsk exon 186821335 186822866 7523 + . gene_id "ERV316A3_2q32.1g"; transcript_id "ERV316A3_2q32.1g"; locus "ERV316A3_2q32.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0362"; repClass "LTR"; repEnd "1760"; repFamily "ERVL"; repLeft "-3466"; repStart "173"; chr2 rmsk exon 186822966 186824642 7523 + . gene_id "ERV316A3_2q32.1g"; transcript_id "ERV316A3_2q32.1g"; locus "ERV316A3_2q32.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0362"; repClass "LTR"; repEnd "3500"; repFamily "ERVL"; repLeft "-1726"; repStart "1761"; chr2 rmsk exon 186824878 186824937 304 + . gene_id "ERV316A3_2q32.1g"; transcript_id "ERV316A3_2q32.1g"; locus "ERV316A3_2q32.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0362"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "-1649"; repStart "3518"; ### ERVLE_2q32.1g ### chr2 rmsk gene 186918744 186919651 . - . gene_id "ERVLE_2q32.1g"; transcript_id "ERVLE_2q32.1g"; locus "ERVLE_2q32.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0589"; model_cov "629"; model_pct "11.1"; chr2 rmsk exon 186918744 186919087 348 - . gene_id "ERVLE_2q32.1g"; transcript_id "ERVLE_2q32.1g"; locus "ERVLE_2q32.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0589"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "4637"; repStart "-666"; chr2 rmsk exon 186919397 186919651 640 - . gene_id "ERVLE_2q32.1g"; transcript_id "ERVLE_2q32.1g"; locus "ERVLE_2q32.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0589"; repClass "LTR"; repEnd "4097"; repFamily "ERVL"; repLeft "3832"; repStart "-1570"; ### ERV316A3_2q32.1h ### chr2 rmsk gene 187085749 187087545 . + . gene_id "ERV316A3_2q32.1h"; transcript_id "ERV316A3_2q32.1h"; locus "ERV316A3_2q32.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0364"; model_cov "895"; model_pct "17.1"; chr2 rmsk exon 187085749 187085780 2361 + . gene_id "ERV316A3_2q32.1h"; transcript_id "ERV316A3_2q32.1h"; locus "ERV316A3_2q32.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0364"; repClass "LTR"; repEnd "3451"; repFamily "ERVL"; repLeft "-1775"; repStart "3420"; chr2 rmsk exon 187086348 187087251 2361 + . gene_id "ERV316A3_2q32.1h"; transcript_id "ERV316A3_2q32.1h"; locus "ERV316A3_2q32.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0364"; repClass "LTR"; repEnd "4316"; repFamily "ERVL"; repLeft "-910"; repStart "3452"; chr2 rmsk exon 187087252 187087545 860 + . gene_id "ERV316A3_2q32.1h"; transcript_id "ERV316A3_2q32.1h"; locus "ERV316A3_2q32.1h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0364"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "158"; ### HERVL_2q32.1f ### chr2 rmsk gene 187178291 187184613 . - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0201"; model_cov "5055"; model_pct "89.4"; chr2 rmsk exon 187178291 187178752 2982 - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0201"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 187178757 187181443 22026 - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0201"; repClass "LTR"; repEnd "5650"; repFamily "ERVL"; repLeft "2954"; repStart "-4"; chr2 rmsk exon 187181799 187182201 22026 - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0201"; repClass "LTR"; repEnd "2953"; repFamily "ERVL"; repLeft "2564"; repStart "-2701"; chr2 rmsk exon 187182201 187184155 14202 - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0201"; repClass "LTR"; repEnd "1971"; repFamily "ERVL"; repLeft "1"; repStart "-3683"; chr2 rmsk exon 187184156 187184613 3307 - . gene_id "HERVL_2q32.1f"; transcript_id "HERVL_2q32.1f"; locus "HERVL_2q32.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0201"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_2q32.1g ### chr2 rmsk gene 187200359 187205857 . - . gene_id "HERVL_2q32.1g"; transcript_id "HERVL_2q32.1g"; locus "HERVL_2q32.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0202"; model_cov "5652"; model_pct "100.0"; chr2 rmsk exon 187200359 187200900 2012 - . gene_id "HERVL_2q32.1g"; transcript_id "HERVL_2q32.1g"; locus "HERVL_2q32.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0202"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-100"; repStart "-6"; chr2 rmsk exon 187200901 187204857 23864 - . gene_id "HERVL_2q32.1g"; transcript_id "HERVL_2q32.1g"; locus "HERVL_2q32.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0202"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "88"; repStart "0"; chr2 rmsk exon 187205228 187205314 3527 - . gene_id "HERVL_2q32.1g"; transcript_id "HERVL_2q32.1g"; locus "HERVL_2q32.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0202"; repClass "LTR"; repEnd "87"; repFamily "ERVL"; repLeft "1"; repStart "-5567"; chr2 rmsk exon 187205315 187205857 1954 - . gene_id "HERVL_2q32.1g"; transcript_id "HERVL_2q32.1g"; locus "HERVL_2q32.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0202"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-98"; repStart "0"; ### HERVL_2q32.1h ### chr2 rmsk gene 187225684 187227274 . + . gene_id "HERVL_2q32.1h"; transcript_id "HERVL_2q32.1h"; locus "HERVL_2q32.1h"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0203"; model_cov "1596"; model_pct "28.2"; chr2 rmsk exon 187225684 187227274 11800 + . gene_id "HERVL_2q32.1h"; transcript_id "HERVL_2q32.1h"; locus "HERVL_2q32.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0203"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "-2227"; repStart "1831"; ### HERVL_2q32.1i ### chr2 rmsk gene 187283756 187285839 . - . gene_id "HERVL_2q32.1i"; transcript_id "HERVL_2q32.1i"; locus "HERVL_2q32.1i"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0204"; model_cov "1346"; model_pct "23.8"; chr2 rmsk exon 187283756 187285069 9829 - . gene_id "HERVL_2q32.1i"; transcript_id "HERVL_2q32.1i"; locus "HERVL_2q32.1i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0204"; repClass "LTR"; repEnd "1347"; repFamily "ERVL"; repLeft "1"; repStart "-4307"; chr2 rmsk exon 187285070 187285138 3101 - . gene_id "HERVL_2q32.1i"; transcript_id "HERVL_2q32.1i"; locus "HERVL_2q32.1i"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0204"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr2 rmsk exon 187285443 187285839 3101 - . gene_id "HERVL_2q32.1i"; transcript_id "HERVL_2q32.1i"; locus "HERVL_2q32.1i"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0204"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "1"; repStart "-57"; ### ERVLE_2q32.1h ### chr2 rmsk gene 187290006 187292048 . + . gene_id "ERVLE_2q32.1h"; transcript_id "ERVLE_2q32.1h"; locus "ERVLE_2q32.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0590"; model_cov "1918"; model_pct "33.8"; chr2 rmsk exon 187290006 187290499 699 + . gene_id "ERVLE_2q32.1h"; transcript_id "ERVLE_2q32.1h"; locus "ERVLE_2q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0590"; repClass "LTR"; repEnd "496"; repFamily "ERVL"; repLeft "-5171"; repStart "2"; chr2 rmsk exon 187290586 187290825 524 + . gene_id "ERVLE_2q32.1h"; transcript_id "ERVLE_2q32.1h"; locus "ERVLE_2q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0590"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "-4541"; repStart "883"; chr2 rmsk exon 187290827 187290938 306 + . gene_id "ERVLE_2q32.1h"; transcript_id "ERVLE_2q32.1h"; locus "ERVLE_2q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0590"; repClass "LTR"; repEnd "1292"; repFamily "ERVL"; repLeft "-4375"; repStart "1182"; chr2 rmsk exon 187291018 187292048 1915 + . gene_id "ERVLE_2q32.1h"; transcript_id "ERVLE_2q32.1h"; locus "ERVLE_2q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0590"; repClass "LTR"; repEnd "2462"; repFamily "ERVL"; repLeft "-3205"; repStart "1391"; ### ERVLB4_2q32.1f ### chr2 rmsk gene 187324343 187325785 . - . gene_id "ERVLB4_2q32.1f"; transcript_id "ERVLB4_2q32.1f"; locus "ERVLB4_2q32.1f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0256"; model_cov "878"; model_pct "15.4"; chr2 rmsk exon 187324343 187325240 4746 - . gene_id "ERVLB4_2q32.1f"; transcript_id "ERVLB4_2q32.1f"; locus "ERVLB4_2q32.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0256"; repClass "LTR"; repEnd "880"; repFamily "ERVL"; repLeft "2"; repStart "-4834"; chr2 rmsk exon 187325243 187325297 281 - . gene_id "ERVLB4_2q32.1f"; transcript_id "ERVLB4_2q32.1f"; locus "ERVLB4_2q32.1f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0256"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "466"; repStart "-1"; chr2 rmsk exon 187325347 187325785 2620 - . gene_id "ERVLB4_2q32.1f"; transcript_id "ERVLB4_2q32.1f"; locus "ERVLB4_2q32.1f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0256"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "46"; repStart "-40"; ### HARLEQUIN_2q32.1 ### chr2 rmsk gene 187510490 187515862 . + . gene_id "HARLEQUIN_2q32.1"; transcript_id "HARLEQUIN_2q32.1"; locus "HARLEQUIN_2q32.1"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0037"; model_cov "5068"; model_pct "73.5"; chr2 rmsk exon 187510490 187510951 3505 + . gene_id "HARLEQUIN_2q32.1"; transcript_id "HARLEQUIN_2q32.1"; locus "HARLEQUIN_2q32.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0037"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 187510952 187515862 20462 + . gene_id "HARLEQUIN_2q32.1"; transcript_id "HARLEQUIN_2q32.1"; locus "HARLEQUIN_2q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0037"; repClass "LTR"; repEnd "5069"; repFamily "ERV1"; repLeft "-1827"; repStart "1"; ### HERVH_2q32.1b ### chr2 rmsk gene 187557941 187566148 . - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0184"; model_cov "7199"; model_pct "93.3"; chr2 rmsk exon 187557941 187558387 3316 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 187558389 187562682 29356 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "3478"; repStart "-1"; chr2 rmsk exon 187562673 187562820 880 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 187562815 187565376 16042 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "486"; repStart "-4726"; chr2 rmsk exon 187565381 187565695 2446 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "315"; repFamily "ERV1"; repLeft "1"; repStart "-7398"; chr2 rmsk exon 187565698 187566148 3374 - . gene_id "HERVH_2q32.1b"; transcript_id "HERVH_2q32.1b"; locus "HERVH_2q32.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0184"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_2q32.1b ### chr2 rmsk gene 187654611 187659513 . + . gene_id "MER61_2q32.1b"; transcript_id "MER61_2q32.1b"; locus "MER61_2q32.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0067"; model_cov "4603"; model_pct "88.2"; chr2 rmsk exon 187654611 187654936 1836 + . gene_id "MER61_2q32.1b"; transcript_id "MER61_2q32.1b"; locus "MER61_2q32.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0067"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 187654937 187655514 1950 + . gene_id "MER61_2q32.1b"; transcript_id "MER61_2q32.1b"; locus "MER61_2q32.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0067"; repClass "LTR"; repEnd "571"; repFamily "ERV1"; repLeft "-4646"; repStart "1"; chr2 rmsk exon 187655491 187659192 16009 + . gene_id "MER61_2q32.1b"; transcript_id "MER61_2q32.1b"; locus "MER61_2q32.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0067"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "-289"; repStart "895"; chr2 rmsk exon 187659193 187659513 2028 + . gene_id "MER61_2q32.1b"; transcript_id "MER61_2q32.1b"; locus "MER61_2q32.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0067"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_2q32.1c ### chr2 rmsk gene 187670483 187676269 . - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0185"; model_cov "4900"; model_pct "63.5"; chr2 rmsk exon 187670483 187670930 3555 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 187670931 187671304 2541 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 187671303 187671522 1340 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr2 rmsk exon 187671520 187672180 4244 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 187672183 187672676 3353 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr2 rmsk exon 187672679 187672823 842 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "3140"; repStart "-4426"; chr2 rmsk exon 187672818 187675816 20114 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 187675819 187676269 3289 - . gene_id "HERVH_2q32.1c"; transcript_id "HERVH_2q32.1c"; locus "HERVH_2q32.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0185"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2q32.1i ### chr2 rmsk gene 187791826 187792937 . - . gene_id "ERV316A3_2q32.1i"; transcript_id "ERV316A3_2q32.1i"; locus "ERV316A3_2q32.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0367"; model_cov "528"; model_pct "10.1"; chr2 rmsk exon 187791826 187792291 468 - . gene_id "ERV316A3_2q32.1i"; transcript_id "ERV316A3_2q32.1i"; locus "ERV316A3_2q32.1i"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0367"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr2 rmsk exon 187792422 187792937 692 - . gene_id "ERV316A3_2q32.1i"; transcript_id "ERV316A3_2q32.1i"; locus "ERV316A3_2q32.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0367"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "4255"; repStart "-443"; ### LTR57_2q32.1 ### chr2 rmsk gene 187917945 187919554 . + . gene_id "LTR57_2q32.1"; transcript_id "LTR57_2q32.1"; locus "LTR57_2q32.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0029"; model_cov "536"; model_pct "10.0"; chr2 rmsk exon 187917945 187918383 4086 + . gene_id "LTR57_2q32.1"; transcript_id "LTR57_2q32.1"; locus "LTR57_2q32.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0029"; repClass "LTR"; repEnd "780"; repFamily "ERVL"; repLeft "-4563"; repStart "282"; chr2 rmsk exon 187919517 187919554 4086 + . gene_id "LTR57_2q32.1"; transcript_id "LTR57_2q32.1"; locus "LTR57_2q32.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0029"; repClass "LTR"; repEnd "1160"; repFamily "ERVL"; repLeft "-4183"; repStart "1122"; ### ERVLE_2q32.1i ### chr2 rmsk gene 187966433 187968535 . + . gene_id "ERVLE_2q32.1i"; transcript_id "ERVLE_2q32.1i"; locus "ERVLE_2q32.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0591"; model_cov "2166"; model_pct "38.2"; chr2 rmsk exon 187966433 187968535 1830 + . gene_id "ERVLE_2q32.1i"; transcript_id "ERVLE_2q32.1i"; locus "ERVLE_2q32.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0591"; repClass "LTR"; repEnd "2474"; repFamily "ERVL"; repLeft "-3193"; repStart "308"; ### HERVH_2q32.1d ### chr2 rmsk gene 188033498 188039136 . + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0186"; model_cov "5098"; model_pct "66.1"; chr2 rmsk exon 188033498 188033914 2492 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 188033933 188036618 14570 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "16"; chr2 rmsk exon 188036626 188037469 5566 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr2 rmsk exon 188037472 188038134 4353 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 188038136 188038351 1361 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 188038352 188038729 2368 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 188038730 188039136 2546 + . gene_id "HERVH_2q32.1d"; transcript_id "HERVH_2q32.1d"; locus "HERVH_2q32.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0186"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### HERVH_2q32.1e ### chr2 rmsk gene 188164721 188166349 . - . gene_id "HERVH_2q32.1e"; transcript_id "HERVH_2q32.1e"; locus "HERVH_2q32.1e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0187"; model_cov "1118"; model_pct "14.5"; chr2 rmsk exon 188164721 188165407 4243 - . gene_id "HERVH_2q32.1e"; transcript_id "HERVH_2q32.1e"; locus "HERVH_2q32.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0187"; repClass "LTR"; repEnd "1474"; repFamily "ERV1"; repLeft "801"; repStart "-6239"; chr2 rmsk exon 188165490 188165894 1137 - . gene_id "HERVH_2q32.1e"; transcript_id "HERVH_2q32.1e"; locus "HERVH_2q32.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0187"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chr2 rmsk exon 188165895 188165949 413 - . gene_id "HERVH_2q32.1e"; transcript_id "HERVH_2q32.1e"; locus "HERVH_2q32.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0187"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "396"; repStart "0"; chr2 rmsk exon 188166026 188166349 1504 - . gene_id "HERVH_2q32.1e"; transcript_id "HERVH_2q32.1e"; locus "HERVH_2q32.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0187"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "1"; repStart "-48"; ### HERVH_2q32.1f ### chr2 rmsk gene 188168688 188174691 . - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0188"; model_cov "5637"; model_pct "73.1"; chr2 rmsk exon 188168688 188169099 2755 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 188169100 188169478 2413 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 188169477 188169692 1412 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 188169697 188171399 8019 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr2 rmsk exon 188171390 188171539 975 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 188171526 188174283 15144 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr2 rmsk exon 188174286 188174691 2711 - . gene_id "HERVH_2q32.1f"; transcript_id "HERVH_2q32.1f"; locus "HERVH_2q32.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0188"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_2q32.1 ### chr2 rmsk gene 188234862 188240656 . + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0072"; model_cov "5913"; model_pct "99.4"; chr2 rmsk exon 188234862 188235427 3968 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0072"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 188235495 188235573 255 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0072"; repClass "LTR"; repEnd "104"; repFamily "ERV1"; repLeft "-5842"; repStart "1"; chr2 rmsk exon 188235581 188236238 3156 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0072"; repClass "LTR"; repEnd "-302"; repFamily "ERV1"; repLeft "-6248"; repStart "-1590"; chr2 rmsk exon 188236225 188238118 12581 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0072"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "-1327"; repStart "1417"; chr2 rmsk exon 188238421 188239729 12581 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0072"; repClass "LTR"; repEnd "5940"; repFamily "ERV1"; repLeft "-6"; repStart "4620"; chr2 rmsk exon 188240070 188240656 3818 + . gene_id "MER41_2q32.1"; transcript_id "MER41_2q32.1"; locus "MER41_2q32.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0072"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVL_2q32.1j ### chr2 rmsk gene 188410656 188412104 . - . gene_id "HERVL_2q32.1j"; transcript_id "HERVL_2q32.1j"; locus "HERVL_2q32.1j"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0205"; model_cov "968"; model_pct "17.1"; chr2 rmsk exon 188410656 188410758 666 - . gene_id "HERVL_2q32.1j"; transcript_id "HERVL_2q32.1j"; locus "HERVL_2q32.1j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0205"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "4842"; repStart "-689"; chr2 rmsk exon 188410757 188410769 6146 - . gene_id "HERVL_2q32.1j"; transcript_id "HERVL_2q32.1j"; locus "HERVL_2q32.1j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0205"; repClass "LTR"; repEnd "4327"; repFamily "ERVL"; repLeft "4319"; repStart "-1327"; chr2 rmsk exon 188411269 188412104 6146 - . gene_id "HERVL_2q32.1j"; transcript_id "HERVL_2q32.1j"; locus "HERVL_2q32.1j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0205"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "3481"; repStart "-1336"; ### ERVLE_2q32.2a ### chr2 rmsk gene 188771084 188772192 . + . gene_id "ERVLE_2q32.2a"; transcript_id "ERVLE_2q32.2a"; locus "ERVLE_2q32.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0594"; model_cov "1044"; model_pct "18.4"; chr2 rmsk exon 188771084 188771597 433 + . gene_id "ERVLE_2q32.2a"; transcript_id "ERVLE_2q32.2a"; locus "ERVLE_2q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0594"; repClass "LTR"; repEnd "2692"; repFamily "ERVL"; repLeft "-2975"; repStart "2167"; chr2 rmsk exon 188771685 188772192 912 + . gene_id "ERVLE_2q32.2a"; transcript_id "ERVLE_2q32.2a"; locus "ERVLE_2q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0594"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "-2674"; repStart "2474"; ### HERVL_2q32.2a ### chr2 rmsk gene 188801605 188804800 . + . gene_id "HERVL_2q32.2a"; transcript_id "HERVL_2q32.2a"; locus "HERVL_2q32.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0207"; model_cov "2365"; model_pct "41.8"; chr2 rmsk exon 188801605 188802016 2415 + . gene_id "HERVL_2q32.2a"; transcript_id "HERVL_2q32.2a"; locus "HERVL_2q32.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0207"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 188802017 188803661 12609 + . gene_id "HERVL_2q32.2a"; transcript_id "HERVL_2q32.2a"; locus "HERVL_2q32.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0207"; repClass "LTR"; repEnd "1644"; repFamily "ERVL"; repLeft "-4010"; repStart "1"; chr2 rmsk exon 188803662 188804376 5423 + . gene_id "HERVL_2q32.2a"; transcript_id "HERVL_2q32.2a"; locus "HERVL_2q32.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0207"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "4930"; chr2 rmsk exon 188804379 188804800 2650 + . gene_id "HERVL_2q32.2a"; transcript_id "HERVL_2q32.2a"; locus "HERVL_2q32.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0207"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_2q32.2b ### chr2 rmsk gene 188808912 188810780 . + . gene_id "ERVLE_2q32.2b"; transcript_id "ERVLE_2q32.2b"; locus "ERVLE_2q32.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0595"; model_cov "1349"; model_pct "23.8"; chr2 rmsk exon 188808912 188809340 659 + . gene_id "ERVLE_2q32.2b"; transcript_id "ERVLE_2q32.2b"; locus "ERVLE_2q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0595"; repClass "LTR"; repEnd "3718"; repFamily "ERVL"; repLeft "-1949"; repStart "3266"; chr2 rmsk exon 188809494 188809911 433 + . gene_id "ERVLE_2q32.2b"; transcript_id "ERVLE_2q32.2b"; locus "ERVLE_2q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0595"; repClass "LTR"; repEnd "4487"; repFamily "ERVL"; repLeft "-1180"; repStart "4031"; chr2 rmsk exon 188809937 188810230 297 + . gene_id "ERVLE_2q32.2b"; transcript_id "ERVLE_2q32.2b"; locus "ERVLE_2q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0595"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "-856"; repStart "4498"; chr2 rmsk exon 188810652 188810780 336 + . gene_id "ERVLE_2q32.2b"; transcript_id "ERVLE_2q32.2b"; locus "ERVLE_2q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0595"; repClass "LTR"; repEnd "5107"; repFamily "ERVL"; repLeft "-560"; repStart "4979"; ### HERVL_2q32.2b ### chr2 rmsk gene 188904384 188910883 . - . gene_id "HERVL_2q32.2b"; transcript_id "HERVL_2q32.2b"; locus "HERVL_2q32.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0208"; model_cov "5614"; model_pct "99.3"; chr2 rmsk exon 188904384 188904423 2965 - . gene_id "HERVL_2q32.2b"; transcript_id "HERVL_2q32.2b"; locus "HERVL_2q32.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0208"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr2 rmsk exon 188904478 188904881 2965 - . gene_id "HERVL_2q32.2b"; transcript_id "HERVL_2q32.2b"; locus "HERVL_2q32.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0208"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr2 rmsk exon 188904882 188910483 42636 - . gene_id "HERVL_2q32.2b"; transcript_id "HERVL_2q32.2b"; locus "HERVL_2q32.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0208"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "40"; repStart "0"; chr2 rmsk exon 188910484 188910883 3035 - . gene_id "HERVL_2q32.2b"; transcript_id "HERVL_2q32.2b"; locus "HERVL_2q32.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0208"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; ### ERV316A3_2q32.2a ### chr2 rmsk gene 189075831 189078068 . + . gene_id "ERV316A3_2q32.2a"; transcript_id "ERV316A3_2q32.2a"; locus "ERV316A3_2q32.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0370"; model_cov "983"; model_pct "18.8"; chr2 rmsk exon 189075831 189076240 1170 + . gene_id "ERV316A3_2q32.2a"; transcript_id "ERV316A3_2q32.2a"; locus "ERV316A3_2q32.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0370"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr2 rmsk exon 189076599 189076755 286 + . gene_id "ERV316A3_2q32.2a"; transcript_id "ERV316A3_2q32.2a"; locus "ERV316A3_2q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0370"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "-4443"; repStart "631"; chr2 rmsk exon 189077268 189078068 854 + . gene_id "ERV316A3_2q32.2a"; transcript_id "ERV316A3_2q32.2a"; locus "ERV316A3_2q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0370"; repClass "LTR"; repEnd "1204"; repFamily "ERVL"; repLeft "-4022"; repStart "373"; ### ERVLB4_2q32.2 ### chr2 rmsk gene 189418308 189418957 . - . gene_id "ERVLB4_2q32.2"; transcript_id "ERVLB4_2q32.2"; locus "ERVLB4_2q32.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0258"; model_cov "682"; model_pct "11.9"; chr2 rmsk exon 189418308 189418957 1240 - . gene_id "ERVLB4_2q32.2"; transcript_id "ERVLB4_2q32.2"; locus "ERVLB4_2q32.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0258"; repClass "LTR"; repEnd "2317"; repFamily "ERVL"; repLeft "1635"; repStart "-3397"; ### MER4_2q32.2 ### chr2 rmsk gene 189880343 189882935 . - . gene_id "MER4_2q32.2"; transcript_id "MER4_2q32.2"; locus "MER4_2q32.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0115"; model_cov "802"; model_pct "12.2"; chr2 rmsk exon 189880343 189880749 2594 - . gene_id "MER4_2q32.2"; transcript_id "MER4_2q32.2"; locus "MER4_2q32.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0115"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 189881377 189882148 4809 - . gene_id "MER4_2q32.2"; transcript_id "MER4_2q32.2"; locus "MER4_2q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0115"; repClass "LTR"; repEnd "6509"; repFamily "ERV1"; repLeft "5707"; repStart "-89"; chr2 rmsk exon 189882289 189882935 4546 - . gene_id "MER4_2q32.2"; transcript_id "MER4_2q32.2"; locus "MER4_2q32.2"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0115"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "5"; repStart "-16"; ### ERVLE_2q32.2c ### chr2 rmsk gene 190086496 190087687 . - . gene_id "ERVLE_2q32.2c"; transcript_id "ERVLE_2q32.2c"; locus "ERVLE_2q32.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0598"; model_cov "1202"; model_pct "21.2"; chr2 rmsk exon 190086496 190087243 1998 - . gene_id "ERVLE_2q32.2c"; transcript_id "ERVLE_2q32.2c"; locus "ERVLE_2q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0598"; repClass "LTR"; repEnd "5307"; repFamily "ERVL"; repLeft "4519"; repStart "-360"; chr2 rmsk exon 190087288 190087687 1182 - . gene_id "ERVLE_2q32.2c"; transcript_id "ERVLE_2q32.2c"; locus "ERVLE_2q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0598"; repClass "LTR"; repEnd "4148"; repFamily "ERVL"; repLeft "3734"; repStart "-1519"; ### HERVP71A_2q32.2 ### chr2 rmsk gene 190213418 190219869 . + . gene_id "HERVP71A_2q32.2"; transcript_id "HERVP71A_2q32.2"; locus "HERVP71A_2q32.2"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0014"; model_cov "3537"; model_pct "46.6"; chr2 rmsk exon 190213418 190214012 4250 + . gene_id "HERVP71A_2q32.2"; transcript_id "HERVP71A_2q32.2"; locus "HERVP71A_2q32.2"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0014"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr2 rmsk exon 190214013 190215711 7713 + . gene_id "HERVP71A_2q32.2"; transcript_id "HERVP71A_2q32.2"; locus "HERVP71A_2q32.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0014"; repClass "LTR"; repEnd "1784"; repFamily "ERV1"; repLeft "-5806"; repStart "2"; chr2 rmsk exon 190217528 190219239 7106 + . gene_id "HERVP71A_2q32.2"; transcript_id "HERVP71A_2q32.2"; locus "HERVP71A_2q32.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0014"; repClass "LTR"; repEnd "6899"; repFamily "ERV1"; repLeft "-691"; repStart "5144"; chr2 rmsk exon 190219308 190219869 3707 + . gene_id "HERVP71A_2q32.2"; transcript_id "HERVP71A_2q32.2"; locus "HERVP71A_2q32.2"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0014"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-18"; repStart "1"; ### HERVL40_2q32.2 ### chr2 rmsk gene 190587122 190590915 . + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0052"; model_cov "3194"; model_pct "57.8"; chr2 rmsk exon 190587122 190587556 1609 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr2 rmsk exon 190587567 190588136 1588 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "14"; chr2 rmsk exon 190588182 190588300 404 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "688"; repFamily "ERVL"; repLeft "-4842"; repStart "569"; chr2 rmsk exon 190588367 190588744 1339 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "1590"; repFamily "ERVL"; repLeft "-3940"; repStart "1187"; chr2 rmsk exon 190588745 190590764 7678 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "4232"; repFamily "ERVL"; repLeft "-1298"; repStart "2116"; chr2 rmsk exon 190590765 190590915 662 + . gene_id "HERVL40_2q32.2"; transcript_id "HERVL40_2q32.2"; locus "HERVL40_2q32.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0052"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-1"; repStart "323"; ### PABLA_2q32.2a ### chr2 rmsk gene 190609031 190613075 . - . gene_id "PABLA_2q32.2a"; transcript_id "PABLA_2q32.2a"; locus "PABLA_2q32.2a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0021"; model_cov "3218"; model_pct "64.2"; chr2 rmsk exon 190609031 190609689 4952 - . gene_id "PABLA_2q32.2a"; transcript_id "PABLA_2q32.2a"; locus "PABLA_2q32.2a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0021"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 190609690 190612152 19400 - . gene_id "PABLA_2q32.2a"; transcript_id "PABLA_2q32.2a"; locus "PABLA_2q32.2a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0021"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "2500"; repStart "0"; chr2 rmsk exon 190612454 190613075 15205 - . gene_id "PABLA_2q32.2a"; transcript_id "PABLA_2q32.2a"; locus "PABLA_2q32.2a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0021"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "1796"; repStart "-2516"; ### PABLA_2q32.2b ### chr2 rmsk gene 190613262 190614896 . - . gene_id "PABLA_2q32.2b"; transcript_id "PABLA_2q32.2b"; locus "PABLA_2q32.2b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0022"; model_cov "1807"; model_pct "36.0"; chr2 rmsk exon 190613262 190613592 15205 - . gene_id "PABLA_2q32.2b"; transcript_id "PABLA_2q32.2b"; locus "PABLA_2q32.2b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0022"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "2124"; repStart "-2516"; chr2 rmsk exon 190613890 190614896 15205 - . gene_id "PABLA_2q32.2b"; transcript_id "PABLA_2q32.2b"; locus "PABLA_2q32.2b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0022"; repClass "LTR"; repEnd "1413"; repFamily "ERV1"; repLeft "-19"; repStart "-3602"; ### ERV316A3_2q32.2b ### chr2 rmsk gene 190756516 190757108 . - . gene_id "ERV316A3_2q32.2b"; transcript_id "ERV316A3_2q32.2b"; locus "ERV316A3_2q32.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0371"; model_cov "614"; model_pct "11.7"; chr2 rmsk exon 190756516 190757108 1144 - . gene_id "ERV316A3_2q32.2b"; transcript_id "ERV316A3_2q32.2b"; locus "ERV316A3_2q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0371"; repClass "LTR"; repEnd "2573"; repFamily "ERVL"; repLeft "1959"; repStart "-2653"; ### ERV316A3_2q32.2c ### chr2 rmsk gene 190842238 190844528 . + . gene_id "ERV316A3_2q32.2c"; transcript_id "ERV316A3_2q32.2c"; locus "ERV316A3_2q32.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0372"; model_cov "1277"; model_pct "24.4"; chr2 rmsk exon 190842238 190842687 1489 + . gene_id "ERV316A3_2q32.2c"; transcript_id "ERV316A3_2q32.2c"; locus "ERV316A3_2q32.2c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0372"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr2 rmsk exon 190842960 190843285 2990 + . gene_id "ERV316A3_2q32.2c"; transcript_id "ERV316A3_2q32.2c"; locus "ERV316A3_2q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0372"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "-3105"; repStart "1787"; chr2 rmsk exon 190843603 190844240 2990 + . gene_id "ERV316A3_2q32.2c"; transcript_id "ERV316A3_2q32.2c"; locus "ERV316A3_2q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0372"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "-2468"; repStart "2122"; chr2 rmsk exon 190844240 190844528 997 + . gene_id "ERV316A3_2q32.2c"; transcript_id "ERV316A3_2q32.2c"; locus "ERV316A3_2q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0372"; repClass "LTR"; repEnd "4040"; repFamily "ERVL"; repLeft "-1186"; repStart "3733"; ### ERV316A3_2q32.3a ### chr2 rmsk gene 191179289 191181901 . - . gene_id "ERV316A3_2q32.3a"; transcript_id "ERV316A3_2q32.3a"; locus "ERV316A3_2q32.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0373"; model_cov "1972"; model_pct "37.7"; chr2 rmsk exon 191179289 191179511 501 - . gene_id "ERV316A3_2q32.3a"; transcript_id "ERV316A3_2q32.3a"; locus "ERV316A3_2q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0373"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "4891"; repStart "-105"; chr2 rmsk exon 191179832 191179990 501 - . gene_id "ERV316A3_2q32.3a"; transcript_id "ERV316A3_2q32.3a"; locus "ERV316A3_2q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0373"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "4731"; repStart "-336"; chr2 rmsk exon 191180329 191181901 1974 - . gene_id "ERV316A3_2q32.3a"; transcript_id "ERV316A3_2q32.3a"; locus "ERV316A3_2q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0373"; repClass "LTR"; repEnd "4464"; repFamily "ERVL"; repLeft "2881"; repStart "-762"; ### HUERSP1_2q32.3 ### chr2 rmsk gene 191584256 191588325 . + . gene_id "HUERSP1_2q32.3"; transcript_id "HUERSP1_2q32.3"; locus "HUERSP1_2q32.3"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0036"; model_cov "3126"; model_pct "49.9"; chr2 rmsk exon 191584256 191587357 20801 + . gene_id "HUERSP1_2q32.3"; transcript_id "HUERSP1_2q32.3"; locus "HUERSP1_2q32.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0036"; repClass "LTR"; repEnd "3117"; repFamily "ERV1"; repLeft "-3146"; repStart "68"; chr2 rmsk exon 191587564 191587638 20801 + . gene_id "HUERSP1_2q32.3"; transcript_id "HUERSP1_2q32.3"; locus "HUERSP1_2q32.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0036"; repClass "LTR"; repEnd "3195"; repFamily "ERV1"; repLeft "-3068"; repStart "3118"; chr2 rmsk exon 191587639 191587970 2679 + . gene_id "HUERSP1_2q32.3"; transcript_id "HUERSP1_2q32.3"; locus "HUERSP1_2q32.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0036"; repClass "LTR"; repEnd "535"; repFamily "ERV1"; repLeft "-156"; repStart "205"; chr2 rmsk exon 191588269 191588325 2679 + . gene_id "HUERSP1_2q32.3"; transcript_id "HUERSP1_2q32.3"; locus "HUERSP1_2q32.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0036"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "-107"; repStart "536"; ### ERVLB4_2q32.3 ### chr2 rmsk gene 192042435 192046614 . + . gene_id "ERVLB4_2q32.3"; transcript_id "ERVLB4_2q32.3"; locus "ERVLB4_2q32.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0260"; model_cov "3960"; model_pct "69.3"; chr2 rmsk exon 192042435 192046098 23710 + . gene_id "ERVLB4_2q32.3"; transcript_id "ERVLB4_2q32.3"; locus "ERVLB4_2q32.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0260"; repClass "LTR"; repEnd "4606"; repFamily "ERVL"; repLeft "-1108"; repStart "861"; chr2 rmsk exon 192046390 192046614 23710 + . gene_id "ERVLB4_2q32.3"; transcript_id "ERVLB4_2q32.3"; locus "ERVLB4_2q32.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0260"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-892"; repStart "4607"; ### HERVH_2q32.3a ### chr2 rmsk gene 192130386 192136111 . + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0191"; model_cov "4608"; model_pct "59.7"; chr2 rmsk exon 192130386 192130819 2694 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 192130888 192133817 16666 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "306"; chr2 rmsk exon 192133812 192133959 908 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 192133950 192134454 3465 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "-3718"; repStart "3492"; chr2 rmsk exon 192134455 192135085 2896 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 192135083 192135304 1394 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 192135303 192135677 2519 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 192135678 192136111 2706 + . gene_id "HERVH_2q32.3a"; transcript_id "HERVH_2q32.3a"; locus "HERVH_2q32.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0191"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_2q32.3 ### chr2 rmsk gene 192488401 192490663 . - . gene_id "HERVL_2q32.3"; transcript_id "HERVL_2q32.3"; locus "HERVL_2q32.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0210"; model_cov "1859"; model_pct "32.9"; chr2 rmsk exon 192488401 192488789 2910 - . gene_id "HERVL_2q32.3"; transcript_id "HERVL_2q32.3"; locus "HERVL_2q32.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0210"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "1"; repStart "-59"; chr2 rmsk exon 192488790 192490663 13145 - . gene_id "HERVL_2q32.3"; transcript_id "HERVL_2q32.3"; locus "HERVL_2q32.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0210"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3795"; repStart "0"; ### HERVH_2q32.3b ### chr2 rmsk gene 192506079 192513182 . + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0192"; model_cov "4918"; model_pct "63.8"; chr2 rmsk exon 192506079 192506490 2594 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 192506493 192507788 19919 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "1346"; repFamily "ERV1"; repLeft "-6367"; repStart "1"; chr2 rmsk exon 192509211 192510877 19919 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1347"; chr2 rmsk exon 192510872 192511017 797 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 192511008 192511506 3413 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "3989"; repFamily "ERV1"; repLeft "-3724"; repStart "3492"; chr2 rmsk exon 192511502 192512183 4223 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "5156"; repFamily "ERV1"; repLeft "-2557"; repStart "4478"; chr2 rmsk exon 192512176 192512391 1358 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 192512392 192512769 2379 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 192512770 192513182 2693 + . gene_id "HERVH_2q32.3b"; transcript_id "HERVH_2q32.3b"; locus "HERVH_2q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0192"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_2q32.3a ### chr2 rmsk gene 192722238 192723160 . - . gene_id "ERVLE_2q32.3a"; transcript_id "ERVLE_2q32.3a"; locus "ERVLE_2q32.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0599"; model_cov "961"; model_pct "17.0"; chr2 rmsk exon 192722238 192723160 1013 - . gene_id "ERVLE_2q32.3a"; transcript_id "ERVLE_2q32.3a"; locus "ERVLE_2q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0599"; repClass "LTR"; repEnd "3829"; repFamily "ERVL"; repLeft "2868"; repStart "-1838"; ### ERVLE_2q32.3b ### chr2 rmsk gene 192755818 192757178 . - . gene_id "ERVLE_2q32.3b"; transcript_id "ERVLE_2q32.3b"; locus "ERVLE_2q32.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0600"; model_cov "1236"; model_pct "21.8"; chr2 rmsk exon 192755818 192755954 540 - . gene_id "ERVLE_2q32.3b"; transcript_id "ERVLE_2q32.3b"; locus "ERVLE_2q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0600"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "4925"; repStart "-606"; chr2 rmsk exon 192756149 192757178 1991 - . gene_id "ERVLE_2q32.3b"; transcript_id "ERVLE_2q32.3b"; locus "ERVLE_2q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0600"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "3530"; repStart "-1037"; ### HERVL74_2q32.3 ### chr2 rmsk gene 192762598 192765000 . - . gene_id "HERVL74_2q32.3"; transcript_id "HERVL74_2q32.3"; locus "HERVL74_2q32.3"; category "prototype"; intModel "HERVL74-int"; locid "HERVL74-int_0010"; model_cov "1759"; model_pct "30.9"; chr2 rmsk exon 192762598 192763047 2178 - . gene_id "HERVL74_2q32.3"; transcript_id "HERVL74_2q32.3"; locus "HERVL74_2q32.3"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0010"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 192763067 192763766 1283 - . gene_id "HERVL74_2q32.3"; transcript_id "HERVL74_2q32.3"; locus "HERVL74_2q32.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0010"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "4864"; repStart "-20"; chr2 rmsk exon 192763835 192764787 5020 - . gene_id "HERVL74_2q32.3"; transcript_id "HERVL74_2q32.3"; locus "HERVL74_2q32.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0010"; repClass "LTR"; repEnd "3349"; repFamily "ERVL"; repLeft "2391"; repStart "-2336"; chr2 rmsk exon 192764788 192765000 576 - . gene_id "HERVL74_2q32.3"; transcript_id "HERVL74_2q32.3"; locus "HERVL74_2q32.3"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0010"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "2"; repStart "-247"; ### HERVH_2q32.3c ### chr2 rmsk gene 192918303 192924835 . + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0193"; model_cov "5980"; model_pct "77.5"; chr2 rmsk exon 192918303 192918721 2663 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 192918724 192921470 14941 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr2 rmsk exon 192921457 192922308 5862 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr2 rmsk exon 192922311 192922500 1269 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr2 rmsk exon 192922487 192924415 13462 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5769"; chr2 rmsk exon 192924416 192924835 2645 + . gene_id "HERVH_2q32.3c"; transcript_id "HERVH_2q32.3c"; locus "HERVH_2q32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0193"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### MER61_2q32.3a ### chr2 rmsk gene 193501013 193503662 . - . gene_id "MER61_2q32.3a"; transcript_id "MER61_2q32.3a"; locus "MER61_2q32.3a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0068"; model_cov "822"; model_pct "15.8"; chr2 rmsk exon 193501013 193501347 2015 - . gene_id "MER61_2q32.3a"; transcript_id "MER61_2q32.3a"; locus "MER61_2q32.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0068"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 193501353 193501468 4331 - . gene_id "MER61_2q32.3a"; transcript_id "MER61_2q32.3a"; locus "MER61_2q32.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0068"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "5096"; repStart "-5"; chr2 rmsk exon 193502974 193503662 4331 - . gene_id "MER61_2q32.3a"; transcript_id "MER61_2q32.3a"; locus "MER61_2q32.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0068"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4389"; repStart "-122"; ### MER61_2q32.3b ### chr2 rmsk gene 193503709 193504263 . - . gene_id "MER61_2q32.3b"; transcript_id "MER61_2q32.3b"; locus "MER61_2q32.3b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0069"; model_cov "571"; model_pct "10.9"; chr2 rmsk exon 193503709 193504263 4331 - . gene_id "MER61_2q32.3b"; transcript_id "MER61_2q32.3b"; locus "MER61_2q32.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0069"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4524"; repStart "-122"; ### ERVLE_2q32.3c ### chr2 rmsk gene 193581471 193582299 . + . gene_id "ERVLE_2q32.3c"; transcript_id "ERVLE_2q32.3c"; locus "ERVLE_2q32.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0601"; model_cov "811"; model_pct "14.3"; chr2 rmsk exon 193581471 193582299 769 + . gene_id "ERVLE_2q32.3c"; transcript_id "ERVLE_2q32.3c"; locus "ERVLE_2q32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0601"; repClass "LTR"; repEnd "1694"; repFamily "ERVL"; repLeft "-3973"; repStart "883"; ### ERV316A3_2q32.3b ### chr2 rmsk gene 193844357 193845885 . - . gene_id "ERV316A3_2q32.3b"; transcript_id "ERV316A3_2q32.3b"; locus "ERV316A3_2q32.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0374"; model_cov "1466"; model_pct "28.1"; chr2 rmsk exon 193844357 193844937 1238 - . gene_id "ERV316A3_2q32.3b"; transcript_id "ERV316A3_2q32.3b"; locus "ERV316A3_2q32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0374"; repClass "LTR"; repEnd "2340"; repFamily "ERVL"; repLeft "1753"; repStart "-2886"; chr2 rmsk exon 193845024 193845885 1321 - . gene_id "ERV316A3_2q32.3b"; transcript_id "ERV316A3_2q32.3b"; locus "ERV316A3_2q32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0374"; repClass "LTR"; repEnd "1661"; repFamily "ERVL"; repLeft "782"; repStart "-3565"; ### HERVH_2q32.3d ### chr2 rmsk gene 194130702 194136554 . - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0194"; model_cov "5128"; model_pct "66.5"; chr2 rmsk exon 194130702 194131113 2766 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 194131114 194131487 2139 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 194131486 194131701 1383 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 194131703 194132376 4291 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr2 rmsk exon 194132368 194133219 6076 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr2 rmsk exon 194133199 194136142 16319 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr2 rmsk exon 194136145 194136554 2672 - . gene_id "HERVH_2q32.3d"; transcript_id "HERVH_2q32.3d"; locus "HERVH_2q32.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0194"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVP71A_2q32.3 ### chr2 rmsk gene 194154758 194163177 . - . gene_id "HERVP71A_2q32.3"; transcript_id "HERVP71A_2q32.3"; locus "HERVP71A_2q32.3"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0015"; model_cov "7589"; model_pct "100.0"; chr2 rmsk exon 194154758 194155214 3198 - . gene_id "HERVP71A_2q32.3"; transcript_id "HERVP71A_2q32.3"; locus "HERVP71A_2q32.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0015"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 194155215 194162717 51446 - . gene_id "HERVP71A_2q32.3"; transcript_id "HERVP71A_2q32.3"; locus "HERVP71A_2q32.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0015"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 194162718 194163177 3206 - . gene_id "HERVP71A_2q32.3"; transcript_id "HERVP71A_2q32.3"; locus "HERVP71A_2q32.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0015"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_2q32.3d ### chr2 rmsk gene 194199332 194201491 . - . gene_id "ERVLE_2q32.3d"; transcript_id "ERVLE_2q32.3d"; locus "ERVLE_2q32.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0604"; model_cov "1294"; model_pct "22.8"; chr2 rmsk exon 194199332 194199941 664 - . gene_id "ERVLE_2q32.3d"; transcript_id "ERVLE_2q32.3d"; locus "ERVLE_2q32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0604"; repClass "LTR"; repEnd "3690"; repFamily "ERVL"; repLeft "3171"; repStart "-1977"; chr2 rmsk exon 194200002 194200091 1197 - . gene_id "ERVLE_2q32.3d"; transcript_id "ERVLE_2q32.3d"; locus "ERVLE_2q32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0604"; repClass "LTR"; repEnd "3071"; repFamily "ERVL"; repLeft "2980"; repStart "-2596"; chr2 rmsk exon 194200819 194201491 1197 - . gene_id "ERVLE_2q32.3d"; transcript_id "ERVLE_2q32.3d"; locus "ERVLE_2q32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0604"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "2295"; repStart "-2688"; ### ERVL_2q32.3 ### chr2 rmsk gene 194509942 194512647 . - . gene_id "ERVL_2q32.3"; transcript_id "ERVL_2q32.3"; locus "ERVL_2q32.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0056"; model_cov "800"; model_pct "13.9"; chr2 rmsk exon 194509942 194510110 277 - . gene_id "ERVL_2q32.3"; transcript_id "ERVL_2q32.3"; locus "ERVL_2q32.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0056"; repClass "LTR"; repEnd "5496"; repFamily "ERVL"; repLeft "5323"; repStart "-261"; chr2 rmsk exon 194511384 194511563 293 - . gene_id "ERVL_2q32.3"; transcript_id "ERVL_2q32.3"; locus "ERVL_2q32.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0056"; repClass "LTR"; repEnd "4388"; repFamily "ERVL"; repLeft "4208"; repStart "-1369"; chr2 rmsk exon 194511735 194512053 754 - . gene_id "ERVL_2q32.3"; transcript_id "ERVL_2q32.3"; locus "ERVL_2q32.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0056"; repClass "LTR"; repEnd "2584"; repFamily "ERVL"; repLeft "2269"; repStart "-3173"; chr2 rmsk exon 194512515 194512647 754 - . gene_id "ERVL_2q32.3"; transcript_id "ERVL_2q32.3"; locus "ERVL_2q32.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0056"; repClass "LTR"; repEnd "2268"; repFamily "ERVL"; repLeft "2136"; repStart "-3489"; ### HUERSP3B_2q32.3 ### chr2 rmsk gene 194602578 194611487 . + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0023"; model_cov "6960"; model_pct "93.8"; chr2 rmsk exon 194602578 194603233 2699 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr2 rmsk exon 194603268 194605365 10036 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "2102"; repFamily "ERV1"; repLeft "-5316"; repStart "25"; chr2 rmsk exon 194605439 194606015 3470 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2098"; chr2 rmsk exon 194606443 194609012 20972 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "5647"; repFamily "ERV1"; repLeft "-1771"; repStart "3073"; chr2 rmsk exon 194609103 194610862 20972 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "7413"; repFamily "ERV1"; repLeft "-5"; repStart "5648"; chr2 rmsk exon 194610864 194611487 2772 + . gene_id "HUERSP3B_2q32.3"; transcript_id "HUERSP3B_2q32.3"; locus "HUERSP3B_2q32.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0023"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_2q32.3c ### chr2 rmsk gene 194693299 194694027 . + . gene_id "ERV316A3_2q32.3c"; transcript_id "ERV316A3_2q32.3c"; locus "ERV316A3_2q32.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0375"; model_cov "919"; model_pct "17.6"; chr2 rmsk exon 194693299 194694027 669 + . gene_id "ERV316A3_2q32.3c"; transcript_id "ERV316A3_2q32.3c"; locus "ERV316A3_2q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0375"; repClass "LTR"; repEnd "1138"; repFamily "ERVL"; repLeft "-4088"; repStart "219"; ### ERVLE_2q32.3e ### chr2 rmsk gene 194733834 194736468 . - . gene_id "ERVLE_2q32.3e"; transcript_id "ERVLE_2q32.3e"; locus "ERVLE_2q32.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0606"; model_cov "953"; model_pct "16.8"; chr2 rmsk exon 194733834 194734118 419 - . gene_id "ERVLE_2q32.3e"; transcript_id "ERVLE_2q32.3e"; locus "ERVLE_2q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0606"; repClass "LTR"; repEnd "5063"; repFamily "ERVL"; repLeft "4766"; repStart "-604"; chr2 rmsk exon 194734411 194734500 376 - . gene_id "ERVLE_2q32.3e"; transcript_id "ERVLE_2q32.3e"; locus "ERVLE_2q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0606"; repClass "LTR"; repEnd "4719"; repFamily "ERVL"; repLeft "4628"; repStart "-948"; chr2 rmsk exon 194735920 194736468 888 - . gene_id "ERVLE_2q32.3e"; transcript_id "ERVLE_2q32.3e"; locus "ERVLE_2q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0606"; repClass "LTR"; repEnd "4150"; repFamily "ERVL"; repLeft "3585"; repStart "-1517"; ### MER34B_2q32.3 ### chr2 rmsk gene 195263012 195263808 . + . gene_id "MER34B_2q32.3"; transcript_id "MER34B_2q32.3"; locus "MER34B_2q32.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0049"; model_cov "576"; model_pct "10.8"; chr2 rmsk exon 195263012 195263151 526 + . gene_id "MER34B_2q32.3"; transcript_id "MER34B_2q32.3"; locus "MER34B_2q32.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0049"; repClass "LTR"; repEnd "4830"; repFamily "ERV1"; repLeft "-526"; repStart "4687"; chr2 rmsk exon 195263186 195263613 1149 + . gene_id "MER34B_2q32.3"; transcript_id "MER34B_2q32.3"; locus "MER34B_2q32.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0049"; repClass "LTR"; repEnd "5355"; repFamily "ERV1"; repLeft "-1"; repStart "4922"; chr2 rmsk exon 195263625 195263808 690 + . gene_id "MER34B_2q32.3"; transcript_id "MER34B_2q32.3"; locus "MER34B_2q32.3"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0049"; repClass "LTR"; repEnd "229"; repFamily "ERV1"; repLeft "-313"; repStart "27"; ### MER101_2q32.3 ### chr2 rmsk gene 195278701 195282752 . + . gene_id "MER101_2q32.3"; transcript_id "MER101_2q32.3"; locus "MER101_2q32.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0074"; model_cov "2437"; model_pct "36.7"; chr2 rmsk exon 195278701 195279484 1152 + . gene_id "MER101_2q32.3"; transcript_id "MER101_2q32.3"; locus "MER101_2q32.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0074"; repClass "LTR"; repEnd "2550"; repFamily "ERV1"; repLeft "-4089"; repStart "1584"; chr2 rmsk exon 195280974 195281853 2506 + . gene_id "MER101_2q32.3"; transcript_id "MER101_2q32.3"; locus "MER101_2q32.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0074"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3605"; chr2 rmsk exon 195281849 195282312 1814 + . gene_id "MER101_2q32.3"; transcript_id "MER101_2q32.3"; locus "MER101_2q32.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0074"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6165"; chr2 rmsk exon 195282313 195282752 2392 + . gene_id "MER101_2q32.3"; transcript_id "MER101_2q32.3"; locus "MER101_2q32.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0074"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_2q32.3 ### chr2 rmsk gene 195334677 195340075 . - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0053"; model_cov "5915"; model_pct "68.6"; chr2 rmsk exon 195334677 195335004 2217 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr2 rmsk exon 195335005 195335295 2254 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 195335286 195335324 287 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 195335318 195337204 10428 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr2 rmsk exon 195337190 195338509 9093 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "704"; repStart "-6612"; chr2 rmsk exon 195338871 195339573 4888 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "4"; repStart "-7935"; chr2 rmsk exon 195339579 195340075 3251 - . gene_id "HERVW_2q32.3"; transcript_id "HERVW_2q32.3"; locus "HERVW_2q32.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0053"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "262"; repStart "0"; ### ERVLE_2q32.3f ### chr2 rmsk gene 195942581 195945121 . - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0608"; model_cov "1669"; model_pct "29.5"; chr2 rmsk exon 195942581 195942892 727 - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0608"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "4578"; repStart "-794"; chr2 rmsk exon 195943248 195943533 727 - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0608"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "4256"; repStart "-1090"; chr2 rmsk exon 195943539 195943615 300 - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0608"; repClass "LTR"; repEnd "4214"; repFamily "ERVL"; repLeft "4139"; repStart "-1453"; chr2 rmsk exon 195943848 195944208 974 - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0608"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3635"; repStart "-1659"; chr2 rmsk exon 195944522 195945121 858 - . gene_id "ERVLE_2q32.3f"; transcript_id "ERVLE_2q32.3f"; locus "ERVLE_2q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0608"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "33"; repStart "-5029"; ### LTR25_2q32.3a ### chr2 rmsk gene 196124161 196131057 . - . gene_id "LTR25_2q32.3a"; transcript_id "LTR25_2q32.3a"; locus "LTR25_2q32.3a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0020"; model_cov "6052"; model_pct "84.2"; chr2 rmsk exon 196124161 196124497 29670 - . gene_id "LTR25_2q32.3a"; transcript_id "LTR25_2q32.3a"; locus "LTR25_2q32.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0020"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "6846"; repStart "-2"; chr2 rmsk exon 196124828 196125272 29670 - . gene_id "LTR25_2q32.3a"; transcript_id "LTR25_2q32.3a"; locus "LTR25_2q32.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0020"; repClass "LTR"; repEnd "6845"; repFamily "ERV1"; repLeft "6414"; repStart "-343"; chr2 rmsk exon 196125575 196129512 29670 - . gene_id "LTR25_2q32.3a"; transcript_id "LTR25_2q32.3a"; locus "LTR25_2q32.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0020"; repClass "LTR"; repEnd "6413"; repFamily "ERV1"; repLeft "2459"; repStart "-775"; chr2 rmsk exon 196129768 196131057 6358 - . gene_id "LTR25_2q32.3a"; transcript_id "LTR25_2q32.3a"; locus "LTR25_2q32.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0020"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "-752"; repStart "-6613"; ### LTR25_2q32.3b ### chr2 rmsk gene 196131088 196132431 . - . gene_id "LTR25_2q32.3b"; transcript_id "LTR25_2q32.3b"; locus "LTR25_2q32.3b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0021"; model_cov "1391"; model_pct "19.4"; chr2 rmsk exon 196131088 196131343 1443 - . gene_id "LTR25_2q32.3b"; transcript_id "LTR25_2q32.3b"; locus "LTR25_2q32.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0021"; repClass "LTR"; repEnd "2440"; repFamily "ERV1"; repLeft "2186"; repStart "-4748"; chr2 rmsk exon 196131341 196132431 2833 - . gene_id "LTR25_2q32.3b"; transcript_id "LTR25_2q32.3b"; locus "LTR25_2q32.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0021"; repClass "LTR"; repEnd "1140"; repFamily "ERV1"; repLeft "3"; repStart "-6048"; ### HERVP71A_2q33.1 ### chr2 rmsk gene 196830363 196832033 . - . gene_id "HERVP71A_2q33.1"; transcript_id "HERVP71A_2q33.1"; locus "HERVP71A_2q33.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0016"; model_cov "1313"; model_pct "17.3"; chr2 rmsk exon 196830363 196830423 420 - . gene_id "HERVP71A_2q33.1"; transcript_id "HERVP71A_2q33.1"; locus "HERVP71A_2q33.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0016"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "399"; repStart "0"; chr2 rmsk exon 196830424 196831577 6058 - . gene_id "HERVP71A_2q33.1"; transcript_id "HERVP71A_2q33.1"; locus "HERVP71A_2q33.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0016"; repClass "LTR"; repEnd "1315"; repFamily "ERV1"; repLeft "2"; repStart "-6275"; chr2 rmsk exon 196831578 196832033 3437 - . gene_id "HERVP71A_2q33.1"; transcript_id "HERVP71A_2q33.1"; locus "HERVP71A_2q33.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0016"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### MER101_2q33.1 ### chr2 rmsk gene 196851115 196854775 . + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0075"; model_cov "3412"; model_pct "51.4"; chr2 rmsk exon 196851115 196851594 2662 + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0075"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr2 rmsk exon 196851785 196851986 456 + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0075"; repClass "LTR"; repEnd "2214"; repFamily "ERV1"; repLeft "-4425"; repStart "1986"; chr2 rmsk exon 196852001 196852400 1253 + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0075"; repClass "LTR"; repEnd "3744"; repFamily "ERV1"; repLeft "-2895"; repStart "3332"; chr2 rmsk exon 196852388 196853938 6109 + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0075"; repClass "LTR"; repEnd "3492"; repFamily "ERV1"; repLeft "-3147"; repStart "1721"; chr2 rmsk exon 196854199 196854775 6109 + . gene_id "MER101_2q33.1"; transcript_id "MER101_2q33.1"; locus "MER101_2q33.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0075"; repClass "LTR"; repEnd "3781"; repFamily "ERV1"; repLeft "-2858"; repStart "2780"; ### ERVLE_2q33.1a ### chr2 rmsk gene 197313057 197317919 . + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0609"; model_cov "4101"; model_pct "72.4"; chr2 rmsk exon 197313057 197313365 4051 + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0609"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "-4308"; repStart "1060"; chr2 rmsk exon 197313677 197316196 5396 + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0609"; repClass "LTR"; repEnd "4092"; repFamily "ERVL"; repLeft "-1575"; repStart "1331"; chr2 rmsk exon 197316266 197316440 5396 + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0609"; repClass "LTR"; repEnd "4286"; repFamily "ERVL"; repLeft "-1381"; repStart "4093"; chr2 rmsk exon 197316750 197316775 3240 + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0609"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "-1339"; repStart "4287"; chr2 rmsk exon 197317073 197317919 3240 + . gene_id "ERVLE_2q33.1a"; transcript_id "ERVLE_2q33.1a"; locus "ERVLE_2q33.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0609"; repClass "LTR"; repEnd "5136"; repFamily "ERVL"; repLeft "-531"; repStart "4329"; ### HERVH_2q33.1a ### chr2 rmsk gene 197578410 197587726 . + . gene_id "HERVH_2q33.1a"; transcript_id "HERVH_2q33.1a"; locus "HERVH_2q33.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0195"; model_cov "7727"; model_pct "100.0"; chr2 rmsk exon 197578410 197578776 2353 + . gene_id "HERVH_2q33.1a"; transcript_id "HERVH_2q33.1a"; locus "HERVH_2q33.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0195"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 197578777 197583625 21410 + . gene_id "HERVH_2q33.1a"; transcript_id "HERVH_2q33.1a"; locus "HERVH_2q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0195"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-2684"; repStart "1"; chr2 rmsk exon 197584677 197587358 19269 + . gene_id "HERVH_2q33.1a"; transcript_id "HERVH_2q33.1a"; locus "HERVH_2q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0195"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5014"; chr2 rmsk exon 197587359 197587726 2294 + . gene_id "HERVH_2q33.1a"; transcript_id "HERVH_2q33.1a"; locus "HERVH_2q33.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0195"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q33.1b ### chr2 rmsk gene 198631690 198632717 . + . gene_id "ERVLE_2q33.1b"; transcript_id "ERVLE_2q33.1b"; locus "ERVLE_2q33.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0611"; model_cov "914"; model_pct "16.1"; chr2 rmsk exon 198631690 198632059 580 + . gene_id "ERVLE_2q33.1b"; transcript_id "ERVLE_2q33.1b"; locus "ERVLE_2q33.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0611"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-1009"; repStart "4282"; chr2 rmsk exon 198632147 198632386 703 + . gene_id "ERVLE_2q33.1b"; transcript_id "ERVLE_2q33.1b"; locus "ERVLE_2q33.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0611"; repClass "LTR"; repEnd "4896"; repFamily "ERVL"; repLeft "-771"; repStart "4626"; chr2 rmsk exon 198632467 198632717 440 + . gene_id "ERVLE_2q33.1b"; transcript_id "ERVLE_2q33.1b"; locus "ERVLE_2q33.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0611"; repClass "LTR"; repEnd "5318"; repFamily "ERVL"; repLeft "-349"; repStart "5050"; ### ERV316A3_2q33.1a ### chr2 rmsk gene 198945854 198948341 . + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0378"; model_cov "2299"; model_pct "44.0"; chr2 rmsk exon 198945854 198946495 1114 + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0378"; repClass "LTR"; repEnd "2223"; repFamily "ERVL"; repLeft "-3003"; repStart "1552"; chr2 rmsk exon 198946500 198946699 399 + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0378"; repClass "LTR"; repEnd "2527"; repFamily "ERVL"; repLeft "-2699"; repStart "2328"; chr2 rmsk exon 198946699 198947323 1042 + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0378"; repClass "LTR"; repEnd "3250"; repFamily "ERVL"; repLeft "-1976"; repStart "2535"; chr2 rmsk exon 198947441 198947986 1196 + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0378"; repClass "LTR"; repEnd "4214"; repFamily "ERVL"; repLeft "-1012"; repStart "3655"; chr2 rmsk exon 198948189 198948341 438 + . gene_id "ERV316A3_2q33.1a"; transcript_id "ERV316A3_2q33.1a"; locus "ERV316A3_2q33.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0378"; repClass "LTR"; repEnd "4383"; repFamily "ERVL"; repLeft "-843"; repStart "4228"; ### ERV316A3_2q33.1b ### chr2 rmsk gene 198948861 198950472 . + . gene_id "ERV316A3_2q33.1b"; transcript_id "ERV316A3_2q33.1b"; locus "ERV316A3_2q33.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0379"; model_cov "620"; model_pct "11.9"; chr2 rmsk exon 198948861 198948993 579 + . gene_id "ERV316A3_2q33.1b"; transcript_id "ERV316A3_2q33.1b"; locus "ERV316A3_2q33.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0379"; repClass "LTR"; repEnd "4357"; repFamily "ERVL"; repLeft "-869"; repStart "4180"; chr2 rmsk exon 198949350 198949784 579 + . gene_id "ERV316A3_2q33.1b"; transcript_id "ERV316A3_2q33.1b"; locus "ERV316A3_2q33.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0379"; repClass "LTR"; repEnd "4801"; repFamily "ERVL"; repLeft "-425"; repStart "4358"; chr2 rmsk exon 198949971 198950472 1337 + . gene_id "ERV316A3_2q33.1b"; transcript_id "ERV316A3_2q33.1b"; locus "ERV316A3_2q33.1b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0379"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-4"; repStart "36"; ### ERVLE_2q33.1c ### chr2 rmsk gene 198995691 198999477 . + . gene_id "ERVLE_2q33.1c"; transcript_id "ERVLE_2q33.1c"; locus "ERVLE_2q33.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0614"; model_cov "3687"; model_pct "65.1"; chr2 rmsk exon 198995691 198997006 1624 + . gene_id "ERVLE_2q33.1c"; transcript_id "ERVLE_2q33.1c"; locus "ERVLE_2q33.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0614"; repClass "LTR"; repEnd "1696"; repFamily "ERVL"; repLeft "-3971"; repStart "385"; chr2 rmsk exon 198997017 198998333 2433 + . gene_id "ERVLE_2q33.1c"; transcript_id "ERVLE_2q33.1c"; locus "ERVLE_2q33.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0614"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "-2475"; repStart "1812"; chr2 rmsk exon 198998549 198999477 2433 + . gene_id "ERVLE_2q33.1c"; transcript_id "ERVLE_2q33.1c"; locus "ERVLE_2q33.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0614"; repClass "LTR"; repEnd "4176"; repFamily "ERVL"; repLeft "-1491"; repStart "3180"; ### ERV316A3_2q33.1c ### chr2 rmsk gene 199139172 199140174 . - . gene_id "ERV316A3_2q33.1c"; transcript_id "ERV316A3_2q33.1c"; locus "ERV316A3_2q33.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0380"; model_cov "1108"; model_pct "21.2"; chr2 rmsk exon 199139172 199140174 1754 - . gene_id "ERV316A3_2q33.1c"; transcript_id "ERV316A3_2q33.1c"; locus "ERV316A3_2q33.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0380"; repClass "LTR"; repEnd "4399"; repFamily "ERVL"; repLeft "3291"; repStart "-827"; ### ERV316A3_2q33.1d ### chr2 rmsk gene 199146953 199151327 . + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0381"; model_cov "2676"; model_pct "51.2"; chr2 rmsk exon 199146953 199147421 860 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr2 rmsk exon 199147422 199147598 259 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-4818"; repStart "231"; chr2 rmsk exon 199147615 199147703 472 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "807"; repFamily "ERVL"; repLeft "-4419"; repStart "712"; chr2 rmsk exon 199148077 199148379 472 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "1099"; repFamily "ERVL"; repLeft "-4127"; repStart "808"; chr2 rmsk exon 199148386 199148869 820 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "2155"; repFamily "ERVL"; repLeft "-3071"; repStart "1649"; chr2 rmsk exon 199148881 199149188 2930 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "3833"; repFamily "ERVL"; repLeft "-1393"; repStart "3515"; chr2 rmsk exon 199149552 199149651 2930 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "3932"; repFamily "ERVL"; repLeft "-1294"; repStart "3834"; chr2 rmsk exon 199149768 199150971 2930 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "-102"; repStart "3933"; chr2 rmsk exon 199151084 199151327 434 + . gene_id "ERV316A3_2q33.1d"; transcript_id "ERV316A3_2q33.1d"; locus "ERV316A3_2q33.1d"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0381"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "-234"; repStart "1"; ### HERVH_2q33.1b ### chr2 rmsk gene 199179365 199185671 . + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0196"; model_cov "5638"; model_pct "73.1"; chr2 rmsk exon 199179365 199179814 3140 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 199179817 199182786 20761 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 199182766 199182913 876 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr2 rmsk exon 199182906 199184631 8553 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr2 rmsk exon 199184636 199184851 1374 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 199184850 199185230 2440 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 199185231 199185671 3202 + . gene_id "HERVH_2q33.1b"; transcript_id "HERVH_2q33.1b"; locus "HERVH_2q33.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0196"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL18_2q33.1 ### chr2 rmsk gene 199223786 199230424 . - . gene_id "HERVL18_2q33.1"; transcript_id "HERVL18_2q33.1"; locus "HERVL18_2q33.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0029"; model_cov "6046"; model_pct "100.0"; chr2 rmsk exon 199223786 199224099 1755 - . gene_id "HERVL18_2q33.1"; transcript_id "HERVL18_2q33.1"; locus "HERVL18_2q33.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0029"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 199224101 199230083 33508 - . gene_id "HERVL18_2q33.1"; transcript_id "HERVL18_2q33.1"; locus "HERVL18_2q33.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0029"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 199230090 199230424 2017 - . gene_id "HERVL18_2q33.1"; transcript_id "HERVL18_2q33.1"; locus "HERVL18_2q33.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0029"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### HERVH_2q33.1c ### chr2 rmsk gene 199247247 199252648 . + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0197"; model_cov "4896"; model_pct "63.5"; chr2 rmsk exon 199247247 199247353 890 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr2 rmsk exon 199247354 199250333 19223 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 199250328 199250475 795 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 199250475 199250970 3177 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr2 rmsk exon 199250973 199251634 4027 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 199251636 199251854 1166 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 199251857 199252233 2303 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr2 rmsk exon 199252234 199252648 2902 + . gene_id "HERVH_2q33.1c"; transcript_id "HERVH_2q33.1c"; locus "HERVH_2q33.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0197"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### ERV316A3_2q33.1e ### chr2 rmsk gene 199613737 199617980 . - . gene_id "ERV316A3_2q33.1e"; transcript_id "ERV316A3_2q33.1e"; locus "ERV316A3_2q33.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0382"; model_cov "3474"; model_pct "66.5"; chr2 rmsk exon 199613737 199613955 603 - . gene_id "ERV316A3_2q33.1e"; transcript_id "ERV316A3_2q33.1e"; locus "ERV316A3_2q33.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0382"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "3584"; repStart "-1400"; chr2 rmsk exon 199614031 199614928 4939 - . gene_id "ERV316A3_2q33.1e"; transcript_id "ERV316A3_2q33.1e"; locus "ERV316A3_2q33.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0382"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "2377"; repStart "-1945"; chr2 rmsk exon 199615232 199617569 4939 - . gene_id "ERV316A3_2q33.1e"; transcript_id "ERV316A3_2q33.1e"; locus "ERV316A3_2q33.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0382"; repClass "LTR"; repEnd "2376"; repFamily "ERVL"; repLeft "48"; repStart "-2850"; chr2 rmsk exon 199617579 199617980 999 - . gene_id "ERV316A3_2q33.1e"; transcript_id "ERV316A3_2q33.1e"; locus "ERV316A3_2q33.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0382"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "5"; repStart "-49"; ### ERV316A3_2q33.1f ### chr2 rmsk gene 199705744 199707138 . - . gene_id "ERV316A3_2q33.1f"; transcript_id "ERV316A3_2q33.1f"; locus "ERV316A3_2q33.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0383"; model_cov "1338"; model_pct "25.6"; chr2 rmsk exon 199705744 199705909 756 - . gene_id "ERV316A3_2q33.1f"; transcript_id "ERV316A3_2q33.1f"; locus "ERV316A3_2q33.1f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0383"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "311"; repStart "0"; chr2 rmsk exon 199705910 199706326 1507 - . gene_id "ERV316A3_2q33.1f"; transcript_id "ERV316A3_2q33.1f"; locus "ERV316A3_2q33.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0383"; repClass "LTR"; repEnd "4992"; repFamily "ERVL"; repLeft "4549"; repStart "-234"; chr2 rmsk exon 199706325 199707138 2200 - . gene_id "ERV316A3_2q33.1f"; transcript_id "ERV316A3_2q33.1f"; locus "ERV316A3_2q33.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0383"; repClass "LTR"; repEnd "4027"; repFamily "ERVL"; repLeft "3132"; repStart "-1199"; ### ERV316A3_2q33.1g ### chr2 rmsk gene 199772560 199775568 . - . gene_id "ERV316A3_2q33.1g"; transcript_id "ERV316A3_2q33.1g"; locus "ERV316A3_2q33.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0384"; model_cov "2660"; model_pct "50.9"; chr2 rmsk exon 199772560 199775177 3795 - . gene_id "ERV316A3_2q33.1g"; transcript_id "ERV316A3_2q33.1g"; locus "ERV316A3_2q33.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0384"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "2"; repStart "-2564"; chr2 rmsk exon 199775218 199775568 974 - . gene_id "ERV316A3_2q33.1g"; transcript_id "ERV316A3_2q33.1g"; locus "ERV316A3_2q33.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0384"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "43"; repStart "-40"; ### MER41_2q33.1 ### chr2 rmsk gene 200552394 200557622 . - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0073"; model_cov "4395"; model_pct "73.9"; chr2 rmsk exon 200552394 200552939 3585 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0073"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr2 rmsk exon 200552951 200555166 12075 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0073"; repClass "LTR"; repEnd "4832"; repFamily "ERV1"; repLeft "2837"; repStart "-1114"; chr2 rmsk exon 200555135 200555947 3500 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0073"; repClass "LTR"; repEnd "1766"; repFamily "ERV1"; repLeft "576"; repStart "-4180"; chr2 rmsk exon 200555950 200555961 3496 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0073"; repClass "LTR"; repEnd "2028"; repFamily "ERV1"; repLeft "2017"; repStart "-3918"; chr2 rmsk exon 200556260 200556820 3496 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0073"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1458"; repStart "-3930"; chr2 rmsk exon 200556840 200557475 4083 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0073"; repClass "LTR"; repEnd "642"; repFamily "ERV1"; repLeft "1"; repStart "-5304"; chr2 rmsk exon 200557476 200557622 926 - . gene_id "MER41_2q33.1"; transcript_id "MER41_2q33.1"; locus "MER41_2q33.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0073"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### ERV316A3_2q33.1h ### chr2 rmsk gene 200674288 200675166 . + . gene_id "ERV316A3_2q33.1h"; transcript_id "ERV316A3_2q33.1h"; locus "ERV316A3_2q33.1h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0386"; model_cov "977"; model_pct "18.7"; chr2 rmsk exon 200674288 200675166 2474 + . gene_id "ERV316A3_2q33.1h"; transcript_id "ERV316A3_2q33.1h"; locus "ERV316A3_2q33.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0386"; repClass "LTR"; repEnd "4141"; repFamily "ERVL"; repLeft "-1085"; repStart "3164"; ### ERVLE_2q33.1d ### chr2 rmsk gene 201055724 201058023 . + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0616"; model_cov "935"; model_pct "16.5"; chr2 rmsk exon 201055724 201055779 850 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "2898"; repFamily "ERVL"; repLeft "-2769"; repStart "2845"; chr2 rmsk exon 201056224 201056393 965 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "3050"; repFamily "ERVL"; repLeft "-2617"; repStart "2899"; chr2 rmsk exon 201056694 201056818 965 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "3172"; repFamily "ERVL"; repLeft "-2495"; repStart "3051"; chr2 rmsk exon 201057036 201057225 687 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "-2267"; repStart "3180"; chr2 rmsk exon 201057584 201057807 654 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "3654"; repFamily "ERVL"; repLeft "-2013"; repStart "3366"; chr2 rmsk exon 201057924 201058023 339 + . gene_id "ERVLE_2q33.1d"; transcript_id "ERVLE_2q33.1d"; locus "ERVLE_2q33.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0616"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "-1230"; repStart "4335"; ### HERVL40_2q33.1 ### chr2 rmsk gene 201515030 201519159 . - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; category "tandem*"; intModel "HERVL40-int"; locid "HERVL40-int_0054"; model_cov "1615"; model_pct "29.2"; chr2 rmsk exon 201515030 201515202 1020 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "2483"; repFamily "ERVL"; repLeft "2261"; repStart "-3047"; chr2 rmsk exon 201515468 201515595 1020 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "2260"; repFamily "ERVL"; repLeft "2134"; repStart "-3270"; chr2 rmsk exon 201515768 201515825 328 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "2056"; repStart "-3416"; chr2 rmsk exon 201515825 201515916 327 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "1519"; repStart "-3922"; chr2 rmsk exon 201516645 201516736 314 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "1484"; repFamily "ERVL"; repLeft "1390"; repStart "-4046"; chr2 rmsk exon 201517184 201517475 493 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "1"; repStart "-5237"; chr2 rmsk exon 201517477 201517607 630 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "382"; repStart "0"; chr2 rmsk exon 201517608 201519159 4925 - . gene_id "HERVL40_2q33.1"; transcript_id "HERVL40_2q33.1"; locus "HERVL40_2q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0054"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "1378"; repStart "-2537"; ### ERVLB4_2q33.1 ### chr2 rmsk gene 201567350 201570350 . - . gene_id "ERVLB4_2q33.1"; transcript_id "ERVLB4_2q33.1"; locus "ERVLB4_2q33.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0261"; model_cov "2245"; model_pct "39.3"; chr2 rmsk exon 201567350 201567835 2568 - . gene_id "ERVLB4_2q33.1"; transcript_id "ERVLB4_2q33.1"; locus "ERVLB4_2q33.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0261"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "35"; repStart "-6"; chr2 rmsk exon 201567836 201569900 13224 - . gene_id "ERVLB4_2q33.1"; transcript_id "ERVLB4_2q33.1"; locus "ERVLB4_2q33.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0261"; repClass "LTR"; repEnd "3173"; repFamily "ERVL"; repLeft "1084"; repStart "-2541"; chr2 rmsk exon 201570193 201570350 13224 - . gene_id "ERVLB4_2q33.1"; transcript_id "ERVLB4_2q33.1"; locus "ERVLB4_2q33.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0261"; repClass "LTR"; repEnd "1083"; repFamily "ERVL"; repLeft "927"; repStart "-4631"; ### ERV316A3_2q33.2 ### chr2 rmsk gene 203846166 203852533 . + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0388"; model_cov "5005"; model_pct "95.8"; chr2 rmsk exon 203846166 203846246 380 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "102"; repFamily "ERVL"; repLeft "-360"; repStart "23"; chr2 rmsk exon 203846501 203846828 1275 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-14"; repStart "110"; chr2 rmsk exon 203846829 203848097 3598 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "1369"; repFamily "ERVL"; repLeft "-3857"; repStart "31"; chr2 rmsk exon 203848149 203851761 13200 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "1559"; chr2 rmsk exon 203851762 203851858 1248 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "-370"; repStart "1"; chr2 rmsk exon 203852220 203852533 1248 + . gene_id "ERV316A3_2q33.2"; transcript_id "ERV316A3_2q33.2"; locus "ERV316A3_2q33.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0388"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-32"; repStart "93"; ### HERVH_2q33.2 ### chr2 rmsk gene 203961942 203967634 . - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0199"; model_cov "4902"; model_pct "63.6"; chr2 rmsk exon 203961942 203962351 2740 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 203962352 203962728 2235 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 203962729 203962945 1242 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 203962950 203963609 4255 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr2 rmsk exon 203963613 203964113 3251 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3492"; repStart "-3721"; chr2 rmsk exon 203964104 203964251 841 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 203964246 203967275 19707 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 203967278 203967634 2162 - . gene_id "HERVH_2q33.2"; transcript_id "HERVH_2q33.2"; locus "HERVH_2q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0199"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_2q33.3 ### chr2 rmsk gene 204400944 204402890 . - . gene_id "ERVLE_2q33.3"; transcript_id "ERVLE_2q33.3"; locus "ERVLE_2q33.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0618"; model_cov "1593"; model_pct "28.1"; chr2 rmsk exon 204400944 204401657 1478 - . gene_id "ERVLE_2q33.3"; transcript_id "ERVLE_2q33.3"; locus "ERVLE_2q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0618"; repClass "LTR"; repEnd "2891"; repFamily "ERVL"; repLeft "2158"; repStart "-2776"; chr2 rmsk exon 204402161 204402890 1478 - . gene_id "ERVLE_2q33.3"; transcript_id "ERVLE_2q33.3"; locus "ERVLE_2q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0618"; repClass "LTR"; repEnd "2157"; repFamily "ERVL"; repLeft "1297"; repStart "-3510"; ### ERV316A3_2q33.3a ### chr2 rmsk gene 205871130 205876307 . + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0389"; model_cov "2027"; model_pct "38.8"; chr2 rmsk exon 205871130 205871234 260 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "109"; repFamily "ERVL"; repLeft "-313"; repStart "3"; chr2 rmsk exon 205871237 205871511 835 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "172"; chr2 rmsk exon 205871547 205871753 368 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "-4754"; repStart "270"; chr2 rmsk exon 205872789 205874090 3158 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "1935"; repFamily "ERVL"; repLeft "-3291"; repStart "588"; chr2 rmsk exon 205874706 205874874 3158 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "-3115"; repStart "1936"; chr2 rmsk exon 205876004 205876307 1069 + . gene_id "ERV316A3_2q33.3a"; transcript_id "ERV316A3_2q33.3a"; locus "ERV316A3_2q33.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0389"; repClass "LTR"; repEnd "2469"; repFamily "ERVL"; repLeft "-2757"; repStart "2166"; ### ERV316A3_2q33.3b ### chr2 rmsk gene 206326051 206330025 . - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0390"; model_cov "2598"; model_pct "49.7"; chr2 rmsk exon 206326051 206326398 1116 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "117"; repStart "-1"; chr2 rmsk exon 206326413 206326455 245 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "44"; repFamily "ERVL"; repLeft "1"; repStart "-378"; chr2 rmsk exon 206326531 206327071 3889 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "3902"; repStart "-806"; chr2 rmsk exon 206327369 206328013 3889 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "3901"; repFamily "ERVL"; repLeft "3228"; repStart "-1325"; chr2 rmsk exon 206328000 206328391 3692 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "1420"; repFamily "ERVL"; repLeft "1040"; repStart "-3806"; chr2 rmsk exon 206328666 206329620 3692 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "1039"; repFamily "ERVL"; repLeft "12"; repStart "-4187"; chr2 rmsk exon 206329638 206330025 1022 - . gene_id "ERV316A3_2q33.3b"; transcript_id "ERV316A3_2q33.3b"; locus "ERV316A3_2q33.3b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0390"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "46"; repStart "-9"; ### HERVL74_2q33.3a ### chr2 rmsk gene 206346090 206348323 . - . gene_id "HERVL74_2q33.3a"; transcript_id "HERVL74_2q33.3a"; locus "HERVL74_2q33.3a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0011"; model_cov "1998"; model_pct "35.1"; chr2 rmsk exon 206346090 206346244 869 - . gene_id "HERVL74_2q33.3a"; transcript_id "HERVL74_2q33.3a"; locus "HERVL74_2q33.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0011"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3914"; repStart "-1612"; chr2 rmsk exon 206346231 206346400 780 - . gene_id "HERVL74_2q33.3a"; transcript_id "HERVL74_2q33.3a"; locus "HERVL74_2q33.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0011"; repClass "LTR"; repEnd "3658"; repFamily "ERVL"; repLeft "3488"; repStart "-2027"; chr2 rmsk exon 206346716 206348323 5503 - . gene_id "HERVL74_2q33.3a"; transcript_id "HERVL74_2q33.3a"; locus "HERVL74_2q33.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0011"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "1668"; repStart "-2348"; ### HERVL74_2q33.3b ### chr2 rmsk gene 206350861 206351441 . - . gene_id "HERVL74_2q33.3b"; transcript_id "HERVL74_2q33.3b"; locus "HERVL74_2q33.3b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0012"; model_cov "616"; model_pct "10.8"; chr2 rmsk exon 206350861 206351441 2326 - . gene_id "HERVL74_2q33.3b"; transcript_id "HERVL74_2q33.3b"; locus "HERVL74_2q33.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0012"; repClass "LTR"; repEnd "1666"; repFamily "ERVL"; repLeft "1050"; repStart "-4019"; ### HERVL_2q33.3 ### chr2 rmsk gene 206741315 206743177 . + . gene_id "HERVL_2q33.3"; transcript_id "HERVL_2q33.3"; locus "HERVL_2q33.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0214"; model_cov "1114"; model_pct "19.7"; chr2 rmsk exon 206741315 206741754 3092 + . gene_id "HERVL_2q33.3"; transcript_id "HERVL_2q33.3"; locus "HERVL_2q33.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0214"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 206741755 206742711 8199 + . gene_id "HERVL_2q33.3"; transcript_id "HERVL_2q33.3"; locus "HERVL_2q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0214"; repClass "LTR"; repEnd "957"; repFamily "ERVL"; repLeft "-4697"; repStart "1"; chr2 rmsk exon 206743015 206743177 8199 + . gene_id "HERVL_2q33.3"; transcript_id "HERVL_2q33.3"; locus "HERVL_2q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0214"; repClass "LTR"; repEnd "1116"; repFamily "ERVL"; repLeft "-4538"; repStart "958"; ### HERVH_2q33.3a ### chr2 rmsk gene 206806840 206812627 . - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0200"; model_cov "4916"; model_pct "63.7"; chr2 rmsk exon 206806840 206807289 3545 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 206807290 206807669 2589 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 206807668 206807892 1293 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 206807894 206808550 4356 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 206808553 206809056 3402 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 206809047 206809196 989 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 206809176 206812174 21038 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr2 rmsk exon 206812177 206812627 3666 - . gene_id "HERVH_2q33.3a"; transcript_id "HERVH_2q33.3a"; locus "HERVH_2q33.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0200"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_2q33.3b ### chr2 rmsk gene 207017218 207023284 . + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0201"; model_cov "5261"; model_pct "68.2"; chr2 rmsk exon 207017218 207017627 2923 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 207017630 207021658 27858 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr2 rmsk exon 207021661 207022278 2963 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 207022280 207022495 1448 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 207022496 207022872 2437 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 207022873 207023284 2951 + . gene_id "HERVH_2q33.3b"; transcript_id "HERVH_2q33.3b"; locus "HERVH_2q33.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0201"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_2q33.3 ### chr2 rmsk gene 208114888 208116803 . + . gene_id "HARLEQUIN_2q33.3"; transcript_id "HARLEQUIN_2q33.3"; locus "HARLEQUIN_2q33.3"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0038"; model_cov "1927"; model_pct "27.9"; chr2 rmsk exon 208114888 208116803 15922 + . gene_id "HARLEQUIN_2q33.3"; transcript_id "HARLEQUIN_2q33.3"; locus "HARLEQUIN_2q33.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0038"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2278"; repStart "2691"; ### ERV316A3_2q33.3c ### chr2 rmsk gene 208147257 208148246 . - . gene_id "ERV316A3_2q33.3c"; transcript_id "ERV316A3_2q33.3c"; locus "ERV316A3_2q33.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0393"; model_cov "765"; model_pct "14.6"; chr2 rmsk exon 208147257 208147988 2611 - . gene_id "ERV316A3_2q33.3c"; transcript_id "ERV316A3_2q33.3c"; locus "ERV316A3_2q33.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0393"; repClass "LTR"; repEnd "4098"; repFamily "ERVL"; repLeft "3333"; repStart "-1128"; chr2 rmsk exon 208147989 208148246 735 - . gene_id "ERV316A3_2q33.3c"; transcript_id "ERV316A3_2q33.3c"; locus "ERV316A3_2q33.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0393"; repClass "LTR"; repEnd "289"; repFamily "ERVL"; repLeft "1"; repStart "-149"; ### HERVH_2q34a ### chr2 rmsk gene 208215925 208221935 . - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0202"; model_cov "5263"; model_pct "68.2"; chr2 rmsk exon 208215925 208216339 2679 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 208216340 208216716 2370 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 208216715 208216930 1420 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 208216932 208217549 3064 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 208217552 208221528 26925 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr2 rmsk exon 208221531 208221935 2627 - . gene_id "HERVH_2q34a"; transcript_id "HERVH_2q34a"; locus "HERVH_2q34a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0202"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "6"; repStart "-2"; ### ERVLE_2q34a ### chr2 rmsk gene 208280271 208282358 . - . gene_id "ERVLE_2q34a"; transcript_id "ERVLE_2q34a"; locus "ERVLE_2q34a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0620"; model_cov "2115"; model_pct "37.3"; chr2 rmsk exon 208280271 208282358 8107 - . gene_id "ERVLE_2q34a"; transcript_id "ERVLE_2q34a"; locus "ERVLE_2q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0620"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "5"; repStart "-3547"; ### HUERSP3_2q34 ### chr2 rmsk gene 208389905 208398026 . - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0033"; model_cov "5877"; model_pct "65.9"; chr2 rmsk exon 208389905 208391405 5458 - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0033"; repClass "LTR"; repEnd "7641"; repFamily "ERV1"; repLeft "5993"; repStart "-1278"; chr2 rmsk exon 208391404 208395038 23402 - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0033"; repClass "LTR"; repEnd "4497"; repFamily "ERV1"; repLeft "890"; repStart "-4422"; chr2 rmsk exon 208395346 208395711 23402 - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0033"; repClass "LTR"; repEnd "889"; repFamily "ERV1"; repLeft "370"; repStart "-8030"; chr2 rmsk exon 208397317 208397420 544 - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0033"; repClass "LTR"; repEnd "104"; repFamily "ERV1"; repLeft "1"; repStart "-8815"; chr2 rmsk exon 208397423 208398026 3991 - . gene_id "HUERSP3_2q34"; transcript_id "HUERSP3_2q34"; locus "HUERSP3_2q34"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0033"; repClass "LTR"; repEnd "642"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_2q34a ### chr2 rmsk gene 208661800 208664596 . + . gene_id "ERV316A3_2q34a"; transcript_id "ERV316A3_2q34a"; locus "ERV316A3_2q34a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0394"; model_cov "1076"; model_pct "20.6"; chr2 rmsk exon 208661800 208661948 272 + . gene_id "ERV316A3_2q34a"; transcript_id "ERV316A3_2q34a"; locus "ERV316A3_2q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0394"; repClass "LTR"; repEnd "1198"; repFamily "ERVL"; repLeft "-4028"; repStart "1051"; chr2 rmsk exon 208663788 208664596 1817 + . gene_id "ERV316A3_2q34a"; transcript_id "ERV316A3_2q34a"; locus "ERV316A3_2q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0394"; repClass "LTR"; repEnd "2097"; repFamily "ERVL"; repLeft "-3129"; repStart "1168"; ### HERVH_2q34b ### chr2 rmsk gene 208900115 208905467 . + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0204"; model_cov "5323"; model_pct "69.0"; chr2 rmsk exon 208900115 208902645 14872 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "362"; chr2 rmsk exon 208902615 208902774 1013 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3128"; chr2 rmsk exon 208902765 208904484 8354 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4503"; chr2 rmsk exon 208904486 208904695 1296 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 208904696 208905072 2442 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 208905073 208905467 2563 + . gene_id "HERVH_2q34b"; transcript_id "HERVH_2q34b"; locus "HERVH_2q34b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0204"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_2q34b ### chr2 rmsk gene 208929415 208931956 . + . gene_id "ERVLE_2q34b"; transcript_id "ERVLE_2q34b"; locus "ERVLE_2q34b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0622"; model_cov "1516"; model_pct "26.8"; chr2 rmsk exon 208929415 208929528 477 + . gene_id "ERVLE_2q34b"; transcript_id "ERVLE_2q34b"; locus "ERVLE_2q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0622"; repClass "LTR"; repEnd "3327"; repFamily "ERVL"; repLeft "-2340"; repStart "3212"; chr2 rmsk exon 208929530 208930274 1670 + . gene_id "ERVLE_2q34b"; transcript_id "ERVLE_2q34b"; locus "ERVLE_2q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0622"; repClass "LTR"; repEnd "4253"; repFamily "ERVL"; repLeft "-1414"; repStart "3484"; chr2 rmsk exon 208931322 208931956 1555 + . gene_id "ERVLE_2q34b"; transcript_id "ERVLE_2q34b"; locus "ERVLE_2q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0622"; repClass "LTR"; repEnd "5387"; repFamily "ERVL"; repLeft "-280"; repStart "4755"; ### MER41_2q34 ### chr2 rmsk gene 209004920 209005696 . + . gene_id "MER41_2q34"; transcript_id "MER41_2q34"; locus "MER41_2q34"; category "internal"; intModel "MER41-int"; locid "MER41-int_0075"; model_cov "793"; model_pct "13.3"; chr2 rmsk exon 209004920 209005696 4983 + . gene_id "MER41_2q34"; transcript_id "MER41_2q34"; locus "MER41_2q34"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0075"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "-840"; repStart "4313"; ### MER61_2q34a ### chr2 rmsk gene 209005697 209006290 . + . gene_id "MER61_2q34a"; transcript_id "MER61_2q34a"; locus "MER61_2q34a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0071"; model_cov "614"; model_pct "11.8"; chr2 rmsk exon 209005697 209006022 2137 + . gene_id "MER61_2q34a"; transcript_id "MER61_2q34a"; locus "MER61_2q34a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0071"; repClass "LTR"; repEnd "3942"; repFamily "ERV1"; repLeft "-1275"; repStart "3605"; chr2 rmsk exon 209006027 209006290 1640 + . gene_id "MER61_2q34a"; transcript_id "MER61_2q34a"; locus "MER61_2q34a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0071"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4940"; ### HERVH_2q34c ### chr2 rmsk gene 209078020 209084376 . + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0205"; model_cov "5640"; model_pct "73.1"; chr2 rmsk exon 209078020 209078469 3379 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 209078472 209081490 20774 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 209081470 209081616 879 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 209081607 209083332 8628 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr2 rmsk exon 209083334 209083549 1388 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 209083548 209083928 2577 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 209083929 209084376 3430 + . gene_id "HERVH_2q34c"; transcript_id "HERVH_2q34c"; locus "HERVH_2q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0205"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_2q34d ### chr2 rmsk gene 209299313 209304932 . + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0206"; model_cov "4916"; model_pct "63.7"; chr2 rmsk exon 209299313 209299790 3395 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 209299793 209302616 15438 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr2 rmsk exon 209302603 209302747 841 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 209302738 209303239 3337 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 209303242 209303898 4179 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 209303896 209304118 1388 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr2 rmsk exon 209304117 209304486 2421 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 209304487 209304932 3591 + . gene_id "HERVH_2q34d"; transcript_id "HERVH_2q34d"; locus "HERVH_2q34d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0206"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q34b ### chr2 rmsk gene 210237690 210241376 . - . gene_id "ERV316A3_2q34b"; transcript_id "ERV316A3_2q34b"; locus "ERV316A3_2q34b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0395"; model_cov "1822"; model_pct "34.9"; chr2 rmsk exon 210237690 210238775 2749 - . gene_id "ERV316A3_2q34b"; transcript_id "ERV316A3_2q34b"; locus "ERV316A3_2q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0395"; repClass "LTR"; repEnd "2050"; repFamily "ERVL"; repLeft "953"; repStart "-3176"; chr2 rmsk exon 210239065 210239620 2749 - . gene_id "ERV316A3_2q34b"; transcript_id "ERV316A3_2q34b"; locus "ERV316A3_2q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0395"; repClass "LTR"; repEnd "952"; repFamily "ERVL"; repLeft "370"; repStart "-4274"; chr2 rmsk exon 210240834 210240974 443 - . gene_id "ERV316A3_2q34b"; transcript_id "ERV316A3_2q34b"; locus "ERV316A3_2q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0395"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "267"; repStart "-4816"; chr2 rmsk exon 210241022 210241376 1088 - . gene_id "ERV316A3_2q34b"; transcript_id "ERV316A3_2q34b"; locus "ERV316A3_2q34b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0395"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "7"; repStart "-5"; ### HERVIP10F_2q34 ### chr2 rmsk gene 210365307 210370183 . - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0023"; model_cov "3840"; model_pct "49.6"; chr2 rmsk exon 210365307 210365927 2560 - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0023"; repClass "LTR"; repEnd "588"; repFamily "ERV1"; repLeft "-23"; repStart "-21"; chr2 rmsk exon 210365929 210368890 11527 - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0023"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "4600"; repStart "-3"; chr2 rmsk exon 210368858 210369087 4340 - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0023"; repClass "LTR"; repEnd "5327"; repFamily "ERV1"; repLeft "5095"; repStart "-2410"; chr2 rmsk exon 210369397 210369822 4340 - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0023"; repClass "LTR"; repEnd "5094"; repFamily "ERV1"; repLeft "4671"; repStart "-2643"; chr2 rmsk exon 210370132 210370183 4340 - . gene_id "HERVIP10F_2q34"; transcript_id "HERVIP10F_2q34"; locus "HERVIP10F_2q34"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0023"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4619"; repStart "-3067"; ### HERVK11_2q34a ### chr2 rmsk gene 210424479 210428103 . - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0017"; model_cov "1502"; model_pct "18.9"; chr2 rmsk exon 210424479 210425544 7156 - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0017"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "1"; repStart "-14"; chr2 rmsk exon 210425545 210426540 8172 - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0017"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chr2 rmsk exon 210426524 210426980 3588 - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0017"; repClass "LTR"; repEnd "6769"; repFamily "ERVK"; repLeft "6305"; repStart "-1184"; chr2 rmsk exon 210426979 210427019 266 - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0017"; repClass "LTR"; repEnd "43"; repFamily "ERVK"; repLeft "1"; repStart "-7910"; chr2 rmsk exon 210427020 210428103 7041 - . gene_id "HERVK11_2q34a"; transcript_id "HERVK11_2q34a"; locus "HERVK11_2q34a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0017"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_2q34c ### chr2 rmsk gene 210882425 210886739 . + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0396"; model_cov "2874"; model_pct "55.0"; chr2 rmsk exon 210882425 210882945 584 + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0396"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 210883160 210883455 392 + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0396"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-5102"; repStart "-181"; chr2 rmsk exon 210883836 210883984 345 + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0396"; repClass "LTR"; repEnd "1925"; repFamily "ERVL"; repLeft "-3301"; repStart "1775"; chr2 rmsk exon 210883971 210884201 791 + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0396"; repClass "LTR"; repEnd "1826"; repFamily "ERVL"; repLeft "-3400"; repStart "1593"; chr2 rmsk exon 210884562 210886739 2871 + . gene_id "ERV316A3_2q34c"; transcript_id "ERV316A3_2q34c"; locus "ERV316A3_2q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0396"; repClass "LTR"; repEnd "5027"; repFamily "ERVL"; repLeft "-199"; repStart "2841"; ### HERVL_2q34a ### chr2 rmsk gene 211135601 211141020 . + . gene_id "HERVL_2q34a"; transcript_id "HERVL_2q34a"; locus "HERVL_2q34a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0216"; model_cov "4952"; model_pct "87.6"; chr2 rmsk exon 211135601 211140428 35132 + . gene_id "HERVL_2q34a"; transcript_id "HERVL_2q34a"; locus "HERVL_2q34a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0216"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "702"; chr2 rmsk exon 211140429 211140819 2700 + . gene_id "HERVL_2q34a"; transcript_id "HERVL_2q34a"; locus "HERVL_2q34a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0216"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr2 rmsk exon 211140919 211140936 296 + . gene_id "HERVL_2q34a"; transcript_id "HERVL_2q34a"; locus "HERVL_2q34a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0216"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-46"; repStart "382"; chr2 rmsk exon 211140980 211141020 296 + . gene_id "HERVL_2q34a"; transcript_id "HERVL_2q34a"; locus "HERVL_2q34a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0216"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-3"; repStart "408"; ### HERVH_2q34e ### chr2 rmsk gene 211261807 211267653 . + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0207"; model_cov "5414"; model_pct "70.2"; chr2 rmsk exon 211261807 211262181 1995 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 211262182 211264899 13701 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 211264879 211265335 2604 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "-4112"; repStart "3140"; chr2 rmsk exon 211265323 211266460 6563 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "-2803"; repStart "3788"; chr2 rmsk exon 211266461 211266740 1456 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "-1685"; repStart "5747"; chr2 rmsk exon 211266723 211267278 3598 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr2 rmsk exon 211267279 211267653 1977 + . gene_id "HERVH_2q34e"; transcript_id "HERVH_2q34e"; locus "HERVH_2q34e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0207"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q34c ### chr2 rmsk gene 211307133 211308352 . - . gene_id "ERVLE_2q34c"; transcript_id "ERVLE_2q34c"; locus "ERVLE_2q34c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0625"; model_cov "1298"; model_pct "22.9"; chr2 rmsk exon 211307133 211308352 2092 - . gene_id "ERVLE_2q34c"; transcript_id "ERVLE_2q34c"; locus "ERVLE_2q34c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0625"; repClass "LTR"; repEnd "2048"; repFamily "ERVL"; repLeft "750"; repStart "-3619"; ### MER61_2q34b ### chr2 rmsk gene 211347153 211348064 . - . gene_id "MER61_2q34b"; transcript_id "MER61_2q34b"; locus "MER61_2q34b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0072"; model_cov "640"; model_pct "12.3"; chr2 rmsk exon 211347153 211347478 1958 - . gene_id "MER61_2q34b"; transcript_id "MER61_2q34b"; locus "MER61_2q34b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0072"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 211347479 211348064 2439 - . gene_id "MER61_2q34b"; transcript_id "MER61_2q34b"; locus "MER61_2q34b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0072"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4577"; repStart "0"; ### ERV316A3_2q34d ### chr2 rmsk gene 211714215 211715439 . + . gene_id "ERV316A3_2q34d"; transcript_id "ERV316A3_2q34d"; locus "ERV316A3_2q34d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0398"; model_cov "1156"; model_pct "22.1"; chr2 rmsk exon 211714215 211715323 1950 + . gene_id "ERV316A3_2q34d"; transcript_id "ERV316A3_2q34d"; locus "ERV316A3_2q34d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0398"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "-1400"; repStart "2670"; chr2 rmsk exon 211715343 211715439 381 + . gene_id "ERV316A3_2q34d"; transcript_id "ERV316A3_2q34d"; locus "ERV316A3_2q34d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0398"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "329"; ### ERVLB4_2q34 ### chr2 rmsk gene 212131490 212132744 . + . gene_id "ERVLB4_2q34"; transcript_id "ERVLB4_2q34"; locus "ERVLB4_2q34"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0263"; model_cov "840"; model_pct "14.7"; chr2 rmsk exon 212131490 212132316 4635 + . gene_id "ERVLB4_2q34"; transcript_id "ERVLB4_2q34"; locus "ERVLB4_2q34"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0263"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4873"; chr2 rmsk exon 212132318 212132744 1924 + . gene_id "ERVLB4_2q34"; transcript_id "ERVLB4_2q34"; locus "ERVLB4_2q34"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0263"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-79"; repStart "1"; ### HERVL_2q34b ### chr2 rmsk gene 212440123 212446678 . + . gene_id "HERVL_2q34b"; transcript_id "HERVL_2q34b"; locus "HERVL_2q34b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0217"; model_cov "5653"; model_pct "100.0"; chr2 rmsk exon 212440123 212440548 3003 + . gene_id "HERVL_2q34b"; transcript_id "HERVL_2q34b"; locus "HERVL_2q34b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0217"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 212440549 212446198 31012 + . gene_id "HERVL_2q34b"; transcript_id "HERVL_2q34b"; locus "HERVL_2q34b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0217"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 212446199 212446578 2974 + . gene_id "HERVL_2q34b"; transcript_id "HERVL_2q34b"; locus "HERVL_2q34b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0217"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr2 rmsk exon 212446639 212446678 2974 + . gene_id "HERVL_2q34b"; transcript_id "HERVL_2q34b"; locus "HERVL_2q34b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0217"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "387"; ### ERV316A3_2q34e ### chr2 rmsk gene 212802265 212807530 . + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0399"; model_cov "2528"; model_pct "48.4"; chr2 rmsk exon 212802265 212802738 920 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 212803205 212804063 304 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "982"; repFamily "ERVL"; repLeft "-4244"; repStart "95"; chr2 rmsk exon 212804471 212804891 1632 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "-3386"; repStart "1470"; chr2 rmsk exon 212805252 212806356 1632 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "2997"; repFamily "ERVL"; repLeft "-2229"; repStart "1841"; chr2 rmsk exon 212806795 212806890 278 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "3608"; repFamily "ERVL"; repLeft "-1618"; repStart "3493"; chr2 rmsk exon 212807176 212807530 852 + . gene_id "ERV316A3_2q34e"; transcript_id "ERV316A3_2q34e"; locus "ERV316A3_2q34e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0399"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-48"; repStart "77"; ### ERVLE_2q34d ### chr2 rmsk gene 212896482 212899373 . - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0626"; model_cov "2194"; model_pct "38.7"; chr2 rmsk exon 212896482 212896669 644 - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0626"; repClass "LTR"; repEnd "259"; repFamily "ERVL"; repLeft "66"; repStart "-369"; chr2 rmsk exon 212896854 212897206 6625 - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0626"; repClass "LTR"; repEnd "2807"; repFamily "ERVL"; repLeft "2461"; repStart "-2860"; chr2 rmsk exon 212897252 212898481 6625 - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0626"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "1224"; repStart "-3207"; chr2 rmsk exon 212898780 212899067 6625 - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0626"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "932"; repStart "-4444"; chr2 rmsk exon 212899066 212899373 1145 - . gene_id "ERVLE_2q34d"; transcript_id "ERVLE_2q34d"; locus "ERVLE_2q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0626"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "27"; repStart "-5319"; ### ERVLE_2q34e ### chr2 rmsk gene 213044484 213048020 . + . gene_id "ERVLE_2q34e"; transcript_id "ERVLE_2q34e"; locus "ERVLE_2q34e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0627"; model_cov "3397"; model_pct "59.9"; chr2 rmsk exon 213044484 213044857 392 + . gene_id "ERVLE_2q34e"; transcript_id "ERVLE_2q34e"; locus "ERVLE_2q34e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0627"; repClass "LTR"; repEnd "496"; repFamily "ERVL"; repLeft "-5171"; repStart "112"; chr2 rmsk exon 213045093 213048020 3207 + . gene_id "ERVLE_2q34e"; transcript_id "ERVLE_2q34e"; locus "ERVLE_2q34e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0627"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "-383"; repStart "2271"; ### ERVLE_2q34f ### chr2 rmsk gene 213204813 213205801 . - . gene_id "ERVLE_2q34f"; transcript_id "ERVLE_2q34f"; locus "ERVLE_2q34f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0629"; model_cov "1010"; model_pct "17.8"; chr2 rmsk exon 213204813 213205801 1329 - . gene_id "ERVLE_2q34f"; transcript_id "ERVLE_2q34f"; locus "ERVLE_2q34f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0629"; repClass "LTR"; repEnd "1422"; repFamily "ERVL"; repLeft "412"; repStart "-4245"; ### HERVL_2q34c ### chr2 rmsk gene 213377837 213381302 . - . gene_id "HERVL_2q34c"; transcript_id "HERVL_2q34c"; locus "HERVL_2q34c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0218"; model_cov "3047"; model_pct "53.9"; chr2 rmsk exon 213377837 213378334 3224 - . gene_id "HERVL_2q34c"; transcript_id "HERVL_2q34c"; locus "HERVL_2q34c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0218"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-110"; repStart "0"; chr2 rmsk exon 213378335 213380993 19080 - . gene_id "HERVL_2q34c"; transcript_id "HERVL_2q34c"; locus "HERVL_2q34c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0218"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2939"; repStart "0"; chr2 rmsk exon 213380992 213381302 715 - . gene_id "HERVL_2q34c"; transcript_id "HERVL_2q34c"; locus "HERVL_2q34c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0218"; repClass "LTR"; repEnd "2087"; repFamily "ERVL"; repLeft "1755"; repStart "-3567"; ### ERVLE_2q34g ### chr2 rmsk gene 213381340 213383043 . - . gene_id "ERVLE_2q34g"; transcript_id "ERVLE_2q34g"; locus "ERVLE_2q34g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0630"; model_cov "1656"; model_pct "29.2"; chr2 rmsk exon 213381340 213382581 2993 - . gene_id "ERVLE_2q34g"; transcript_id "ERVLE_2q34g"; locus "ERVLE_2q34g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0630"; repClass "LTR"; repEnd "4292"; repFamily "ERVL"; repLeft "3023"; repStart "-1375"; chr2 rmsk exon 213382688 213383043 905 - . gene_id "ERVLE_2q34g"; transcript_id "ERVLE_2q34g"; locus "ERVLE_2q34g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0630"; repClass "LTR"; repEnd "2781"; repFamily "ERVL"; repLeft "2394"; repStart "-2886"; ### ERV316A3_2q34f ### chr2 rmsk gene 213383742 213385791 . - . gene_id "ERV316A3_2q34f"; transcript_id "ERV316A3_2q34f"; locus "ERV316A3_2q34f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0401"; model_cov "2080"; model_pct "39.8"; chr2 rmsk exon 213383742 213385791 3548 - . gene_id "ERV316A3_2q34f"; transcript_id "ERV316A3_2q34f"; locus "ERV316A3_2q34f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0401"; repClass "LTR"; repEnd "2616"; repFamily "ERVL"; repLeft "536"; repStart "-2610"; ### HARLEQUIN_2q34 ### chr2 rmsk gene 213406782 213411947 . + . gene_id "HARLEQUIN_2q34"; transcript_id "HARLEQUIN_2q34"; locus "HARLEQUIN_2q34"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0039"; model_cov "7732"; model_pct "100.0"; chr2 rmsk exon 213406782 213411947 18764 + . gene_id "HARLEQUIN_2q34"; transcript_id "HARLEQUIN_2q34"; locus "HARLEQUIN_2q34"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0039"; repClass "LTR"; repEnd "6892"; repFamily "ERV1"; repLeft "-4"; repStart "-840"; ### HERVK11_2q34b ### chr2 rmsk gene 213446565 213449649 . + . gene_id "HERVK11_2q34b"; transcript_id "HERVK11_2q34b"; locus "HERVK11_2q34b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0018"; model_cov "2057"; model_pct "25.9"; chr2 rmsk exon 213446565 213448611 16404 + . gene_id "HERVK11_2q34b"; transcript_id "HERVK11_2q34b"; locus "HERVK11_2q34b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0018"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5896"; chr2 rmsk exon 213448612 213449649 4551 + . gene_id "HERVK11_2q34b"; transcript_id "HERVK11_2q34b"; locus "HERVK11_2q34b"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0018"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_2q34d ### chr2 rmsk gene 213468740 213474965 . - . gene_id "HERVL_2q34d"; transcript_id "HERVL_2q34d"; locus "HERVL_2q34d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0219"; model_cov "5651"; model_pct "99.9"; chr2 rmsk exon 213468740 213469150 2935 - . gene_id "HERVL_2q34d"; transcript_id "HERVL_2q34d"; locus "HERVL_2q34d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0219"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-110"; repStart "-55"; chr2 rmsk exon 213469151 213469570 42816 - . gene_id "HERVL_2q34d"; transcript_id "HERVL_2q34d"; locus "HERVL_2q34d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0219"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5232"; repStart "0"; chr2 rmsk exon 213469597 213474750 42816 - . gene_id "HERVL_2q34d"; transcript_id "HERVL_2q34d"; locus "HERVL_2q34d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0219"; repClass "LTR"; repEnd "5231"; repFamily "ERVL"; repLeft "2"; repStart "-423"; chr2 rmsk exon 213474791 213474965 1269 - . gene_id "HERVL_2q34d"; transcript_id "HERVL_2q34d"; locus "HERVL_2q34d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0219"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "1"; repStart "-269"; ### ERVLE_2q34h ### chr2 rmsk gene 213650106 213651751 . - . gene_id "ERVLE_2q34h"; transcript_id "ERVLE_2q34h"; locus "ERVLE_2q34h"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0631"; model_cov "970"; model_pct "17.1"; chr2 rmsk exon 213650106 213650249 695 - . gene_id "ERVLE_2q34h"; transcript_id "ERVLE_2q34h"; locus "ERVLE_2q34h"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0631"; repClass "LTR"; repEnd "143"; repFamily "ERVL"; repLeft "1"; repStart "-520"; chr2 rmsk exon 213650250 213650702 861 - . gene_id "ERVLE_2q34h"; transcript_id "ERVLE_2q34h"; locus "ERVLE_2q34h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0631"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5193"; repStart "0"; chr2 rmsk exon 213650694 213651100 1238 - . gene_id "ERVLE_2q34h"; transcript_id "ERVLE_2q34h"; locus "ERVLE_2q34h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0631"; repClass "LTR"; repEnd "760"; repFamily "ERVL"; repLeft "264"; repStart "-4907"; chr2 rmsk exon 213651122 213651751 2189 - . gene_id "ERVLE_2q34h"; transcript_id "ERVLE_2q34h"; locus "ERVLE_2q34h"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0631"; repClass "LTR"; repEnd "648"; repFamily "ERVL"; repLeft "1"; repStart "-15"; ### ERV316A3_2q35a ### chr2 rmsk gene 214847747 214849856 . - . gene_id "ERV316A3_2q35a"; transcript_id "ERV316A3_2q35a"; locus "ERV316A3_2q35a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0403"; model_cov "2012"; model_pct "38.5"; chr2 rmsk exon 214847747 214849552 2227 - . gene_id "ERV316A3_2q35a"; transcript_id "ERV316A3_2q35a"; locus "ERV316A3_2q35a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0403"; repClass "LTR"; repEnd "2661"; repFamily "ERVL"; repLeft "883"; repStart "-2565"; chr2 rmsk exon 214849608 214849856 2227 - . gene_id "ERV316A3_2q35a"; transcript_id "ERV316A3_2q35a"; locus "ERV316A3_2q35a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0403"; repClass "LTR"; repEnd "882"; repFamily "ERVL"; repLeft "648"; repStart "-4344"; ### ERV316A3_2q35b ### chr2 rmsk gene 214866562 214870502 . + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0404"; model_cov "2638"; model_pct "50.5"; chr2 rmsk exon 214866562 214866747 502 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "1154"; repFamily "ERVL"; repLeft "-4072"; repStart "958"; chr2 rmsk exon 214866747 214866968 1044 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "-2549"; repStart "2452"; chr2 rmsk exon 214867281 214867408 1044 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "2806"; repFamily "ERVL"; repLeft "-2420"; repStart "2678"; chr2 rmsk exon 214867494 214867650 415 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "2955"; repFamily "ERVL"; repLeft "-2271"; repStart "2677"; chr2 rmsk exon 214867678 214867956 875 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "2736"; chr2 rmsk exon 214867967 214868693 2924 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "4465"; repFamily "ERVL"; repLeft "-761"; repStart "3741"; chr2 rmsk exon 214868948 214869291 2924 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4466"; chr2 rmsk exon 214869312 214869752 1212 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4781"; chr2 rmsk exon 214869755 214870019 1463 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "276"; repFamily "ERVL"; repLeft "-175"; repStart "3"; chr2 rmsk exon 214870322 214870502 1463 + . gene_id "ERV316A3_2q35b"; transcript_id "ERV316A3_2q35b"; locus "ERV316A3_2q35b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0404"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "277"; ### ERV316A3_2q35c ### chr2 rmsk gene 214879116 214880279 . + . gene_id "ERV316A3_2q35c"; transcript_id "ERV316A3_2q35c"; locus "ERV316A3_2q35c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0405"; model_cov "1227"; model_pct "23.5"; chr2 rmsk exon 214879116 214880279 2565 + . gene_id "ERV316A3_2q35c"; transcript_id "ERV316A3_2q35c"; locus "ERV316A3_2q35c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0405"; repClass "LTR"; repEnd "2951"; repFamily "ERVL"; repLeft "-2275"; repStart "1724"; ### HERVH_2q35a ### chr2 rmsk gene 215089939 215096031 . + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0208"; model_cov "5991"; model_pct "77.7"; chr2 rmsk exon 215089939 215090306 2140 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 215090307 215090782 1985 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "-7198"; repStart "1"; chr2 rmsk exon 215090761 215094605 18191 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-1805"; repStart "1424"; chr2 rmsk exon 215094606 215095061 2392 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "6942"; repFamily "ERV1"; repLeft "-771"; repStart "6489"; chr2 rmsk exon 215095127 215095666 3278 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr2 rmsk exon 215095667 215096031 2245 + . gene_id "HERVH_2q35a"; transcript_id "HERVH_2q35a"; locus "HERVH_2q35a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0208"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_2q35 ### chr2 rmsk gene 215204358 215213781 . + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0119"; model_cov "6430"; model_pct "97.5"; chr2 rmsk exon 215204358 215204807 3147 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0119"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 215204811 215204892 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-6512"; repStart "1"; chr2 rmsk exon 215205196 215206168 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "87"; chr2 rmsk exon 215206197 215206583 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "1548"; repFamily "ERV1"; repLeft "-5050"; repStart "1112"; chr2 rmsk exon 215206886 215207700 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "2353"; repFamily "ERV1"; repLeft "-4245"; repStart "1549"; chr2 rmsk exon 215209090 215209235 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4024"; repStart "2354"; chr2 rmsk exon 215209475 215209806 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "3080"; repFamily "ERV1"; repLeft "-3518"; repStart "2575"; chr2 rmsk exon 215210102 215210689 12345 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "3081"; chr2 rmsk exon 215210658 215213325 16207 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0119"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3838"; chr2 rmsk exon 215213332 215213781 3077 + . gene_id "MER4_2q35"; transcript_id "MER4_2q35"; locus "MER4_2q35"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0119"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_2q35d ### chr2 rmsk gene 215517380 215518738 . - . gene_id "ERV316A3_2q35d"; transcript_id "ERV316A3_2q35d"; locus "ERV316A3_2q35d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0406"; model_cov "758"; model_pct "14.5"; chr2 rmsk exon 215517380 215517428 648 - . gene_id "ERV316A3_2q35d"; transcript_id "ERV316A3_2q35d"; locus "ERV316A3_2q35d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0406"; repClass "LTR"; repEnd "315"; repFamily "ERVL"; repLeft "265"; repStart "-141"; chr2 rmsk exon 215517699 215517863 329 - . gene_id "ERV316A3_2q35d"; transcript_id "ERV316A3_2q35d"; locus "ERV316A3_2q35d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0406"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "4992"; repStart "-54"; chr2 rmsk exon 215518145 215518281 368 - . gene_id "ERV316A3_2q35d"; transcript_id "ERV316A3_2q35d"; locus "ERV316A3_2q35d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0406"; repClass "LTR"; repEnd "4563"; repFamily "ERVL"; repLeft "4420"; repStart "-663"; chr2 rmsk exon 215518305 215518738 833 - . gene_id "ERV316A3_2q35d"; transcript_id "ERV316A3_2q35d"; locus "ERV316A3_2q35d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0406"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "4121"; repStart "-670"; ### HERVH_2q35b ### chr2 rmsk gene 215922303 215928126 . + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0209"; model_cov "4912"; model_pct "63.7"; chr2 rmsk exon 215922303 215922755 3468 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 215922758 215925794 20938 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr2 rmsk exon 215925774 215925923 992 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 215925914 215926418 3508 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 215926421 215927082 4501 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 215927084 215927295 1222 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 215927298 215927673 2518 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr2 rmsk exon 215927674 215928126 3554 + . gene_id "HERVH_2q35b"; transcript_id "HERVH_2q35b"; locus "HERVH_2q35b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0209"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q35e ### chr2 rmsk gene 215940647 215942020 . - . gene_id "ERV316A3_2q35e"; transcript_id "ERV316A3_2q35e"; locus "ERV316A3_2q35e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0407"; model_cov "1334"; model_pct "25.5"; chr2 rmsk exon 215940647 215940822 663 - . gene_id "ERV316A3_2q35e"; transcript_id "ERV316A3_2q35e"; locus "ERV316A3_2q35e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0407"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "259"; repStart "0"; chr2 rmsk exon 215940879 215942020 1225 - . gene_id "ERV316A3_2q35e"; transcript_id "ERV316A3_2q35e"; locus "ERV316A3_2q35e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0407"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "1505"; repStart "-2387"; ### ERV316A3_2q35f ### chr2 rmsk gene 216034255 216036830 . + . gene_id "ERV316A3_2q35f"; transcript_id "ERV316A3_2q35f"; locus "ERV316A3_2q35f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0408"; model_cov "995"; model_pct "19.0"; chr2 rmsk exon 216034255 216034576 1062 + . gene_id "ERV316A3_2q35f"; transcript_id "ERV316A3_2q35f"; locus "ERV316A3_2q35f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0408"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-127"; repStart "3"; chr2 rmsk exon 216034705 216035081 795 + . gene_id "ERV316A3_2q35f"; transcript_id "ERV316A3_2q35f"; locus "ERV316A3_2q35f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0408"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "-1122"; repStart "3704"; chr2 rmsk exon 216035983 216036525 1461 + . gene_id "ERV316A3_2q35f"; transcript_id "ERV316A3_2q35f"; locus "ERV316A3_2q35f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0408"; repClass "LTR"; repEnd "4745"; repFamily "ERVL"; repLeft "-481"; repStart "4150"; chr2 rmsk exon 216036635 216036830 906 + . gene_id "ERV316A3_2q35f"; transcript_id "ERV316A3_2q35f"; locus "ERV316A3_2q35f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0408"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-7"; repStart "255"; ### MER101_2q35a ### chr2 rmsk gene 216213296 216216431 . - . gene_id "MER101_2q35a"; transcript_id "MER101_2q35a"; locus "MER101_2q35a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0076"; model_cov "2426"; model_pct "36.5"; chr2 rmsk exon 216213296 216214689 3672 - . gene_id "MER101_2q35a"; transcript_id "MER101_2q35a"; locus "MER101_2q35a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0076"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "1599"; repStart "-2868"; chr2 rmsk exon 216216163 216216431 653 - . gene_id "MER101_2q35a"; transcript_id "MER101_2q35a"; locus "MER101_2q35a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0076"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "252"; repStart "-6133"; ### LTR57_2q35 ### chr2 rmsk gene 216215055 216216151 . - . gene_id "LTR57_2q35"; transcript_id "LTR57_2q35"; locus "LTR57_2q35"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0030"; model_cov "1100"; model_pct "20.6"; chr2 rmsk exon 216215055 216216151 5635 - . gene_id "LTR57_2q35"; transcript_id "LTR57_2q35"; locus "LTR57_2q35"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0030"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "285"; repStart "-3958"; ### ERVLE_2q35a ### chr2 rmsk gene 216510740 216513481 . + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0632"; model_cov "1891"; model_pct "33.4"; chr2 rmsk exon 216510740 216511053 539 + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0632"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "-3389"; repStart "1980"; chr2 rmsk exon 216511105 216511266 479 + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0632"; repClass "LTR"; repEnd "2660"; repFamily "ERVL"; repLeft "-3007"; repStart "2500"; chr2 rmsk exon 216511839 216512010 398 + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0632"; repClass "LTR"; repEnd "3004"; repFamily "ERVL"; repLeft "-2663"; repStart "2827"; chr2 rmsk exon 216512126 216512766 1401 + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0632"; repClass "LTR"; repEnd "3783"; repFamily "ERVL"; repLeft "-1884"; repStart "3097"; chr2 rmsk exon 216512979 216513481 953 + . gene_id "ERVLE_2q35a"; transcript_id "ERVLE_2q35a"; locus "ERVLE_2q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0632"; repClass "LTR"; repEnd "4917"; repFamily "ERVL"; repLeft "-750"; repStart "4347"; ### ERV316A3_2q35g ### chr2 rmsk gene 216817389 216818465 . + . gene_id "ERV316A3_2q35g"; transcript_id "ERV316A3_2q35g"; locus "ERV316A3_2q35g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0409"; model_cov "692"; model_pct "13.2"; chr2 rmsk exon 216817389 216817769 435 + . gene_id "ERV316A3_2q35g"; transcript_id "ERV316A3_2q35g"; locus "ERV316A3_2q35g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0409"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-380"; repStart "4154"; chr2 rmsk exon 216817905 216818465 1691 + . gene_id "ERV316A3_2q35g"; transcript_id "ERV316A3_2q35g"; locus "ERV316A3_2q35g"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0409"; repClass "LTR"; repEnd "565"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### HERVW_2q35 ### chr2 rmsk gene 217590846 217592765 . - . gene_id "HERVW_2q35"; transcript_id "HERVW_2q35"; locus "HERVW_2q35"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0054"; model_cov "1607"; model_pct "18.6"; chr2 rmsk exon 217590846 217591171 2746 - . gene_id "HERVW_2q35"; transcript_id "HERVW_2q35"; locus "HERVW_2q35"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0054"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr2 rmsk exon 217591172 217591463 2313 - . gene_id "HERVW_2q35"; transcript_id "HERVW_2q35"; locus "HERVW_2q35"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0054"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 217591454 217591492 281 - . gene_id "HERVW_2q35"; transcript_id "HERVW_2q35"; locus "HERVW_2q35"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0054"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 217591486 217592765 10600 - . gene_id "HERVW_2q35"; transcript_id "HERVW_2q35"; locus "HERVW_2q35"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0054"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4741"; repStart "-2607"; ### ERVLE_2q35b ### chr2 rmsk gene 217770591 217772071 . + . gene_id "ERVLE_2q35b"; transcript_id "ERVLE_2q35b"; locus "ERVLE_2q35b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0634"; model_cov "1237"; model_pct "21.8"; chr2 rmsk exon 217770591 217770773 845 + . gene_id "ERVLE_2q35b"; transcript_id "ERVLE_2q35b"; locus "ERVLE_2q35b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0634"; repClass "LTR"; repEnd "4156"; repFamily "ERVL"; repLeft "-1511"; repStart "3963"; chr2 rmsk exon 217770819 217771410 1673 + . gene_id "ERVLE_2q35b"; transcript_id "ERVLE_2q35b"; locus "ERVLE_2q35b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0634"; repClass "LTR"; repEnd "4850"; repFamily "ERVL"; repLeft "-817"; repStart "4245"; chr2 rmsk exon 217771635 217772071 460 + . gene_id "ERVLE_2q35b"; transcript_id "ERVLE_2q35b"; locus "ERVLE_2q35b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0634"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5227"; ### MER34B_2q35 ### chr2 rmsk gene 218042417 218047874 . - . gene_id "MER34B_2q35"; transcript_id "MER34B_2q35"; locus "MER34B_2q35"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0051"; model_cov "2674"; model_pct "49.9"; chr2 rmsk exon 218042417 218042948 1136 - . gene_id "MER34B_2q35"; transcript_id "MER34B_2q35"; locus "MER34B_2q35"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0051"; repClass "LTR"; repEnd "5041"; repFamily "ERV1"; repLeft "4185"; repStart "-315"; chr2 rmsk exon 218045300 218045744 3455 - . gene_id "MER34B_2q35"; transcript_id "MER34B_2q35"; locus "MER34B_2q35"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0051"; repClass "LTR"; repEnd "4021"; repFamily "ERV1"; repLeft "3584"; repStart "-1335"; chr2 rmsk exon 218046520 218047874 3455 - . gene_id "MER34B_2q35"; transcript_id "MER34B_2q35"; locus "MER34B_2q35"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0051"; repClass "LTR"; repEnd "3583"; repFamily "ERV1"; repLeft "2202"; repStart "-1773"; ### MER101_2q35b ### chr2 rmsk gene 218050832 218052950 . + . gene_id "MER101_2q35b"; transcript_id "MER101_2q35b"; locus "MER101_2q35b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0077"; model_cov "1719"; model_pct "25.9"; chr2 rmsk exon 218050832 218051031 522 + . gene_id "MER101_2q35b"; transcript_id "MER101_2q35b"; locus "MER101_2q35b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0077"; repClass "LTR"; repEnd "21"; repFamily "ERV1"; repLeft "-6618"; repStart "-141"; chr2 rmsk exon 218051162 218051986 850 + . gene_id "MER101_2q35b"; transcript_id "MER101_2q35b"; locus "MER101_2q35b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0077"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "1906"; chr2 rmsk exon 218052107 218052615 2140 + . gene_id "MER101_2q35b"; transcript_id "MER101_2q35b"; locus "MER101_2q35b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0077"; repClass "LTR"; repEnd "3273"; repFamily "ERV1"; repLeft "-3366"; repStart "2756"; chr2 rmsk exon 218052754 218052950 255 + . gene_id "MER101_2q35b"; transcript_id "MER101_2q35b"; locus "MER101_2q35b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0077"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-3198"; repStart "3260"; ### HERV9_2q35a ### chr2 rmsk gene 218108692 218112255 . - . gene_id "HERV9_2q35a"; transcript_id "HERV9_2q35a"; locus "HERV9_2q35a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0028"; model_cov "2998"; model_pct "35.5"; chr2 rmsk exon 218108692 218109260 4023 - . gene_id "HERV9_2q35a"; transcript_id "HERV9_2q35a"; locus "HERV9_2q35a"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0028"; repClass "LTR"; repEnd "479"; repFamily "ERV1"; repLeft "-137"; repStart "-209"; chr2 rmsk exon 218109261 218110302 8364 - . gene_id "HERV9_2q35a"; transcript_id "HERV9_2q35a"; locus "HERV9_2q35a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0028"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7401"; repStart "0"; chr2 rmsk exon 218110303 218112255 15755 - . gene_id "HERV9_2q35a"; transcript_id "HERV9_2q35a"; locus "HERV9_2q35a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0028"; repClass "LTR"; repEnd "6479"; repFamily "ERV1"; repLeft "4516"; repStart "-1957"; ### HML3_2q35 ### chr2 rmsk gene 218112256 218117006 . + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0034"; model_cov "3735"; model_pct "62.0"; chr2 rmsk exon 218112256 218112766 4321 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr2 rmsk exon 218112767 218113344 4728 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr2 rmsk exon 218113346 218114691 10971 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "-3540"; repStart "1125"; chr2 rmsk exon 218114691 218114823 1139 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "2666"; chr2 rmsk exon 218114824 218115053 1922 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr2 rmsk exon 218115041 218116493 11605 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4583"; chr2 rmsk exon 218116494 218117006 4189 + . gene_id "HML3_2q35"; transcript_id "HML3_2q35"; locus "HML3_2q35"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0034"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_2q35b ### chr2 rmsk gene 218117007 218122161 . - . gene_id "HERV9_2q35b"; transcript_id "HERV9_2q35b"; locus "HERV9_2q35b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0029"; model_cov "4520"; model_pct "53.6"; chr2 rmsk exon 218117007 218121497 38198 - . gene_id "HERV9_2q35b"; transcript_id "HERV9_2q35b"; locus "HERV9_2q35b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0029"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "1"; repStart "-3915"; chr2 rmsk exon 218121498 218122161 5414 - . gene_id "HERV9_2q35b"; transcript_id "HERV9_2q35b"; locus "HERV9_2q35b"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0029"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_2q35c ### chr2 rmsk gene 218174020 218179886 . - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0210"; model_cov "4907"; model_pct "63.6"; chr2 rmsk exon 218174020 218174448 3367 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 218174449 218174828 2422 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr2 rmsk exon 218174827 218175043 1293 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 218175045 218175705 4471 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr2 rmsk exon 218175709 218176211 3481 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr2 rmsk exon 218176202 218176349 917 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr2 rmsk exon 218176344 218179455 16715 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr2 rmsk exon 218179458 218179886 3352 - . gene_id "HERVH_2q35c"; transcript_id "HERVH_2q35c"; locus "HERVH_2q35c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0210"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3B_2q35 ### chr2 rmsk gene 218349659 218352487 . - . gene_id "HUERSP3B_2q35"; transcript_id "HUERSP3B_2q35"; locus "HUERSP3B_2q35"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0024"; model_cov "1337"; model_pct "18.0"; chr2 rmsk exon 218349659 218350142 8081 - . gene_id "HUERSP3B_2q35"; transcript_id "HUERSP3B_2q35"; locus "HUERSP3B_2q35"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0024"; repClass "LTR"; repEnd "7414"; repFamily "ERV1"; repLeft "6950"; repStart "-4"; chr2 rmsk exon 218350438 218350691 8081 - . gene_id "HUERSP3B_2q35"; transcript_id "HUERSP3B_2q35"; locus "HUERSP3B_2q35"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0024"; repClass "LTR"; repEnd "6949"; repFamily "ERV1"; repLeft "6704"; repStart "-469"; chr2 rmsk exon 218350985 218351365 8081 - . gene_id "HUERSP3B_2q35"; transcript_id "HUERSP3B_2q35"; locus "HUERSP3B_2q35"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0024"; repClass "LTR"; repEnd "6703"; repFamily "ERV1"; repLeft "6322"; repStart "-715"; chr2 rmsk exon 218352214 218352487 8081 - . gene_id "HUERSP3B_2q35"; transcript_id "HUERSP3B_2q35"; locus "HUERSP3B_2q35"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0024"; repClass "LTR"; repEnd "6321"; repFamily "ERV1"; repLeft "6074"; repStart "-1097"; ### ERV316A3_2q35h ### chr2 rmsk gene 218537782 218542252 . + . gene_id "ERV316A3_2q35h"; transcript_id "ERV316A3_2q35h"; locus "ERV316A3_2q35h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0410"; model_cov "2001"; model_pct "38.3"; chr2 rmsk exon 218537782 218538061 479 + . gene_id "ERV316A3_2q35h"; transcript_id "ERV316A3_2q35h"; locus "ERV316A3_2q35h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0410"; repClass "LTR"; repEnd "3062"; repFamily "ERVL"; repLeft "-2164"; repStart "2785"; chr2 rmsk exon 218538105 218538807 3868 + . gene_id "ERV316A3_2q35h"; transcript_id "ERV316A3_2q35h"; locus "ERV316A3_2q35h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0410"; repClass "LTR"; repEnd "4171"; repFamily "ERVL"; repLeft "-1055"; repStart "3408"; chr2 rmsk exon 218540764 218541703 3868 + . gene_id "ERV316A3_2q35h"; transcript_id "ERV316A3_2q35h"; locus "ERV316A3_2q35h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0410"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "-93"; repStart "4172"; chr2 rmsk exon 218541829 218542252 682 + . gene_id "ERV316A3_2q35h"; transcript_id "ERV316A3_2q35h"; locus "ERV316A3_2q35h"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0410"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-15"; repStart "3"; ### MER61_2q35 ### chr2 rmsk gene 218793927 218798599 . - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0073"; model_cov "3543"; model_pct "67.9"; chr2 rmsk exon 218793927 218794239 1535 - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0073"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 218794240 218796311 22837 - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0073"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3091"; repStart "0"; chr2 rmsk exon 218796619 218797103 22837 - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0073"; repClass "LTR"; repEnd "3090"; repFamily "ERV1"; repLeft "2595"; repStart "-2127"; chr2 rmsk exon 218797400 218798011 22837 - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0073"; repClass "LTR"; repEnd "2594"; repFamily "ERV1"; repLeft "1970"; repStart "-2623"; chr2 rmsk exon 218798305 218798599 22837 - . gene_id "MER61_2q35"; transcript_id "MER61_2q35"; locus "MER61_2q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0073"; repClass "LTR"; repEnd "1969"; repFamily "ERV1"; repLeft "1671"; repStart "-3248"; ### PRIMA41_2q35 ### chr2 rmsk gene 219581690 219588188 . - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0024"; model_cov "4727"; model_pct "60.9"; chr2 rmsk exon 219581690 219581776 9998 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "6761"; repFamily "ERV1"; repLeft "6676"; repStart "-995"; chr2 rmsk exon 219582086 219583511 9998 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "6675"; repFamily "ERV1"; repLeft "5258"; repStart "-1081"; chr2 rmsk exon 219583492 219583725 20523 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "2994"; repStart "-4526"; chr2 rmsk exon 219584035 219584931 20523 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "2131"; repStart "-4763"; chr2 rmsk exon 219585124 219585241 20523 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "2130"; repFamily "ERV1"; repLeft "2024"; repStart "-5626"; chr2 rmsk exon 219585554 219587547 20523 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "2023"; repFamily "ERV1"; repLeft "2"; repStart "-5733"; chr2 rmsk exon 219587548 219587670 2847 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "399"; repStart "0"; chr2 rmsk exon 219587945 219588188 2847 - . gene_id "PRIMA41_2q35"; transcript_id "PRIMA41_2q35"; locus "PRIMA41_2q35"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0024"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "186"; repStart "-123"; ### ERV316A3_2q35i ### chr2 rmsk gene 220028737 220033584 . + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0412"; model_cov "4156"; model_pct "79.5"; chr2 rmsk exon 220028737 220029005 387 + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0412"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-170"; repStart "5"; chr2 rmsk exon 220029136 220031397 4927 + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0412"; repClass "LTR"; repEnd "2322"; repFamily "ERVL"; repLeft "-2904"; repStart "1"; chr2 rmsk exon 220031424 220032386 4927 + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0412"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "-1960"; repStart "2323"; chr2 rmsk exon 220032401 220033063 1891 + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0412"; repClass "LTR"; repEnd "4883"; repFamily "ERVL"; repLeft "-343"; repStart "3991"; chr2 rmsk exon 220033166 220033584 1245 + . gene_id "ERV316A3_2q35i"; transcript_id "ERV316A3_2q35i"; locus "ERV316A3_2q35i"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0412"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "8"; ### HUERSP1_2q35 ### chr2 rmsk gene 220157677 220159779 . - . gene_id "HUERSP1_2q35"; transcript_id "HUERSP1_2q35"; locus "HUERSP1_2q35"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0037"; model_cov "1475"; model_pct "23.6"; chr2 rmsk exon 220157677 220158310 3751 - . gene_id "HUERSP1_2q35"; transcript_id "HUERSP1_2q35"; locus "HUERSP1_2q35"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0037"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "1"; repStart "-104"; chr2 rmsk exon 220158311 220159653 7880 - . gene_id "HUERSP1_2q35"; transcript_id "HUERSP1_2q35"; locus "HUERSP1_2q35"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0037"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "4931"; repStart "0"; chr2 rmsk exon 220159644 220159779 654 - . gene_id "HUERSP1_2q35"; transcript_id "HUERSP1_2q35"; locus "HUERSP1_2q35"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0037"; repClass "LTR"; repEnd "4365"; repFamily "ERV1"; repLeft "4222"; repStart "-1898"; ### ERVLE_2q35c ### chr2 rmsk gene 220321078 220321826 . + . gene_id "ERVLE_2q35c"; transcript_id "ERVLE_2q35c"; locus "ERVLE_2q35c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0635"; model_cov "803"; model_pct "14.2"; chr2 rmsk exon 220321078 220321826 2270 + . gene_id "ERVLE_2q35c"; transcript_id "ERVLE_2q35c"; locus "ERVLE_2q35c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0635"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "-389"; repStart "4475"; ### ERV316A3_2q35j ### chr2 rmsk gene 220447112 220451110 . + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0413"; model_cov "2330"; model_pct "44.6"; chr2 rmsk exon 220447112 220447180 315 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "156"; repFamily "ERVL"; repLeft "-282"; repStart "85"; chr2 rmsk exon 220447190 220447493 752 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "1528"; repFamily "ERVL"; repLeft "-3698"; repStart "1218"; chr2 rmsk exon 220447817 220448094 752 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "2138"; repFamily "ERVL"; repLeft "-3088"; repStart "1759"; chr2 rmsk exon 220448449 220448665 703 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-2823"; repStart "2139"; chr2 rmsk exon 220448665 220448823 511 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "2616"; repFamily "ERVL"; repLeft "-2610"; repStart "2330"; chr2 rmsk exon 220448897 220449745 2354 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "4885"; repFamily "ERVL"; repLeft "-341"; repStart "4058"; chr2 rmsk exon 220450362 220450621 2354 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "5150"; repFamily "ERVL"; repLeft "-76"; repStart "4886"; chr2 rmsk exon 220450697 220451110 1591 + . gene_id "ERV316A3_2q35j"; transcript_id "ERV316A3_2q35j"; locus "ERV316A3_2q35j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0413"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HERVL_2q35a ### chr2 rmsk gene 220536825 220543740 . - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0221"; model_cov "6010"; model_pct "100.0"; chr2 rmsk exon 220536825 220536863 2778 - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0221"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "390"; repStart "-8"; chr2 rmsk exon 220536962 220537342 2778 - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0221"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr2 rmsk exon 220537343 220538242 6378 - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0221"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4754"; repStart "0"; chr2 rmsk exon 220538228 220543240 29418 - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0221"; repClass "LTR"; repEnd "5098"; repFamily "ERVL"; repLeft "-12"; repStart "-556"; chr2 rmsk exon 220543407 220543740 2264 - . gene_id "HERVL_2q35a"; transcript_id "HERVL_2q35a"; locus "HERVL_2q35a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0221"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "1"; repStart "-89"; ### HERVL_2q35b ### chr2 rmsk gene 220605039 220606860 . - . gene_id "HERVL_2q35b"; transcript_id "HERVL_2q35b"; locus "HERVL_2q35b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0222"; model_cov "1340"; model_pct "23.7"; chr2 rmsk exon 220605039 220605587 1842 - . gene_id "HERVL_2q35b"; transcript_id "HERVL_2q35b"; locus "HERVL_2q35b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0222"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr2 rmsk exon 220605588 220606860 8385 - . gene_id "HERVL_2q35b"; transcript_id "HERVL_2q35b"; locus "HERVL_2q35b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0222"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4314"; repStart "0"; ### ERVLB4_2q36.1a ### chr2 rmsk gene 221753635 221754755 . + . gene_id "ERVLB4_2q36.1a"; transcript_id "ERVLB4_2q36.1a"; locus "ERVLB4_2q36.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0267"; model_cov "1161"; model_pct "20.3"; chr2 rmsk exon 221753635 221754755 2196 + . gene_id "ERVLB4_2q36.1a"; transcript_id "ERVLB4_2q36.1a"; locus "ERVLB4_2q36.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0267"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "-379"; repStart "4174"; ### ERV316A3_2q36.1a ### chr2 rmsk gene 222018453 222021688 . + . gene_id "ERV316A3_2q36.1a"; transcript_id "ERV316A3_2q36.1a"; locus "ERV316A3_2q36.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0414"; model_cov "2935"; model_pct "56.2"; chr2 rmsk exon 222018453 222021038 5780 + . gene_id "ERV316A3_2q36.1a"; transcript_id "ERV316A3_2q36.1a"; locus "ERV316A3_2q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0414"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-1842"; repStart "733"; chr2 rmsk exon 222021131 222021155 693 + . gene_id "ERV316A3_2q36.1a"; transcript_id "ERV316A3_2q36.1a"; locus "ERV316A3_2q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0414"; repClass "LTR"; repEnd "3535"; repFamily "ERVL"; repLeft "-1691"; repStart "3514"; chr2 rmsk exon 222021453 222021688 693 + . gene_id "ERV316A3_2q36.1a"; transcript_id "ERV316A3_2q36.1a"; locus "ERV316A3_2q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0414"; repClass "LTR"; repEnd "3799"; repFamily "ERVL"; repLeft "-1427"; repStart "3536"; ### MER4_2q36.1 ### chr2 rmsk gene 222413266 222416636 . + . gene_id "MER4_2q36.1"; transcript_id "MER4_2q36.1"; locus "MER4_2q36.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0120"; model_cov "4389"; model_pct "66.5"; chr2 rmsk exon 222413266 222416199 13741 + . gene_id "MER4_2q36.1"; transcript_id "MER4_2q36.1"; locus "MER4_2q36.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0120"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "2209"; chr2 rmsk exon 222416200 222416636 2877 + . gene_id "MER4_2q36.1"; transcript_id "MER4_2q36.1"; locus "MER4_2q36.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0120"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_2q36.1a ### chr2 rmsk gene 222434926 222439361 . - . gene_id "HERVL_2q36.1a"; transcript_id "HERVL_2q36.1a"; locus "HERVL_2q36.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0223"; model_cov "3927"; model_pct "69.5"; chr2 rmsk exon 222434926 222434975 270 - . gene_id "HERVL_2q36.1a"; transcript_id "HERVL_2q36.1a"; locus "HERVL_2q36.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0223"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "393"; repStart "0"; chr2 rmsk exon 222435054 222435479 3003 - . gene_id "HERVL_2q36.1a"; transcript_id "HERVL_2q36.1a"; locus "HERVL_2q36.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0223"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-110"; repStart "-42"; chr2 rmsk exon 222435480 222439361 29817 - . gene_id "HERVL_2q36.1a"; transcript_id "HERVL_2q36.1a"; locus "HERVL_2q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0223"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1727"; repStart "0"; ### MER101_2q36.1 ### chr2 rmsk gene 222765791 222769316 . + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0078"; model_cov "1923"; model_pct "29.0"; chr2 rmsk exon 222765791 222765865 347 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "1498"; repFamily "ERV1"; repLeft "-5141"; repStart "1424"; chr2 rmsk exon 222766285 222766851 6678 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "1656"; repFamily "ERV1"; repLeft "-4983"; repStart "1083"; chr2 rmsk exon 222767154 222767631 6678 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "2133"; repFamily "ERV1"; repLeft "-4506"; repStart "1657"; chr2 rmsk exon 222767759 222767877 6678 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "2238"; repFamily "ERV1"; repLeft "-4401"; repStart "2134"; chr2 rmsk exon 222768169 222768343 437 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "2963"; repFamily "ERV1"; repLeft "-3676"; repStart "2862"; chr2 rmsk exon 222768677 222769316 3000 + . gene_id "MER101_2q36.1"; transcript_id "MER101_2q36.1"; locus "MER101_2q36.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0078"; repClass "LTR"; repEnd "4615"; repFamily "ERV1"; repLeft "-2024"; repStart "4020"; ### HERVH_2q36.1a ### chr2 rmsk gene 223188780 223195505 . - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0211"; model_cov "5260"; model_pct "68.2"; chr2 rmsk exon 223188780 223189122 1862 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr2 rmsk exon 223189123 223189498 2156 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr2 rmsk exon 223189499 223189714 1346 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr2 rmsk exon 223189716 223190378 4276 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr2 rmsk exon 223190381 223190520 24111 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3866"; repStart "-3720"; chr2 rmsk exon 223191444 223195099 24111 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "3865"; repFamily "ERV1"; repLeft "1"; repStart "-3848"; chr2 rmsk exon 223195102 223195505 2596 - . gene_id "HERVH_2q36.1a"; transcript_id "HERVH_2q36.1a"; locus "HERVH_2q36.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0211"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_2q36.1b ### chr2 rmsk gene 223295924 223302936 . + . gene_id "HERVL_2q36.1b"; transcript_id "HERVL_2q36.1b"; locus "HERVL_2q36.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0224"; model_cov "5652"; model_pct "100.0"; chr2 rmsk exon 223295924 223296472 1809 + . gene_id "HERVL_2q36.1b"; transcript_id "HERVL_2q36.1b"; locus "HERVL_2q36.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0224"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr2 rmsk exon 223296473 223301857 38344 + . gene_id "HERVL_2q36.1b"; transcript_id "HERVL_2q36.1b"; locus "HERVL_2q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0224"; repClass "LTR"; repEnd "5424"; repFamily "ERVL"; repLeft "-230"; repStart "1"; chr2 rmsk exon 223302151 223302392 38344 + . gene_id "HERVL_2q36.1b"; transcript_id "HERVL_2q36.1b"; locus "HERVL_2q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0224"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5425"; chr2 rmsk exon 223302393 223302936 1683 + . gene_id "HERVL_2q36.1b"; transcript_id "HERVL_2q36.1b"; locus "HERVL_2q36.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0224"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERV316A3_2q36.1b ### chr2 rmsk gene 224070656 224072644 . - . gene_id "ERV316A3_2q36.1b"; transcript_id "ERV316A3_2q36.1b"; locus "ERV316A3_2q36.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0417"; model_cov "907"; model_pct "17.4"; chr2 rmsk exon 224070656 224070873 1201 - . gene_id "ERV316A3_2q36.1b"; transcript_id "ERV316A3_2q36.1b"; locus "ERV316A3_2q36.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0417"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "222"; repStart "0"; chr2 rmsk exon 224071166 224071386 1201 - . gene_id "ERV316A3_2q36.1b"; transcript_id "ERV316A3_2q36.1b"; locus "ERV316A3_2q36.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0417"; repClass "LTR"; repEnd "221"; repFamily "ERVL"; repLeft "9"; repStart "-217"; chr2 rmsk exon 224071395 224072282 1636 - . gene_id "ERV316A3_2q36.1b"; transcript_id "ERV316A3_2q36.1b"; locus "ERV316A3_2q36.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0417"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4319"; repStart "0"; chr2 rmsk exon 224072390 224072644 838 - . gene_id "ERV316A3_2q36.1b"; transcript_id "ERV316A3_2q36.1b"; locus "ERV316A3_2q36.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0417"; repClass "LTR"; repEnd "305"; repFamily "ERVL"; repLeft "56"; repStart "-146"; ### HERVL32_2q36.1 ### chr2 rmsk gene 224073686 224079557 . - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0008"; model_cov "3121"; model_pct "91.3"; chr2 rmsk exon 224073686 224073914 1292 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "235"; repFamily "ERVL"; repLeft "1"; repStart "-222"; chr2 rmsk exon 224073917 224074097 523 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "3225"; repStart "0"; chr2 rmsk exon 224075059 224076092 6948 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "3218"; repFamily "ERVL"; repLeft "2126"; repStart "-200"; chr2 rmsk exon 224076507 224077550 6948 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "2125"; repFamily "ERVL"; repLeft "1118"; repStart "-1293"; chr2 rmsk exon 224078217 224078678 6948 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "1117"; repFamily "ERVL"; repLeft "636"; repStart "-2301"; chr2 rmsk exon 224078752 224079094 1226 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "1"; repStart "-3069"; chr2 rmsk exon 224079099 224079241 774 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "311"; repStart "0"; chr2 rmsk exon 224079293 224079557 1713 - . gene_id "HERVL32_2q36.1"; transcript_id "HERVL32_2q36.1"; locus "HERVL32_2q36.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0008"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "73"; repStart "-119"; ### HERVH_2q36.1b ### chr2 rmsk gene 224087354 224093515 . - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0212"; model_cov "5371"; model_pct "69.6"; chr2 rmsk exon 224087354 224087750 2660 - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0212"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr2 rmsk exon 224087751 224088182 2900 - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0212"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr2 rmsk exon 224088187 224088273 649 - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0212"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4932"; repStart "-2693"; chr2 rmsk exon 224088349 224093105 18591 - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0212"; repClass "LTR"; repEnd "4854"; repFamily "ERV1"; repLeft "1"; repStart "-2859"; chr2 rmsk exon 224093108 224093515 2638 - . gene_id "HERVH_2q36.1b"; transcript_id "HERVH_2q36.1b"; locus "HERVH_2q36.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0212"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_2q36.1b ### chr2 rmsk gene 224103652 224107998 . - . gene_id "ERVLB4_2q36.1b"; transcript_id "ERVLB4_2q36.1b"; locus "ERVLB4_2q36.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0268"; model_cov "3999"; model_pct "70.0"; chr2 rmsk exon 224103652 224104067 1749 - . gene_id "ERVLB4_2q36.1b"; transcript_id "ERVLB4_2q36.1b"; locus "ERVLB4_2q36.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0268"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-10"; repStart "-56"; chr2 rmsk exon 224104068 224107895 18653 - . gene_id "ERVLB4_2q36.1b"; transcript_id "ERVLB4_2q36.1b"; locus "ERVLB4_2q36.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0268"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "1715"; repStart "0"; chr2 rmsk exon 224107896 224107998 614 - . gene_id "ERVLB4_2q36.1b"; transcript_id "ERVLB4_2q36.1b"; locus "ERVLB4_2q36.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0268"; repClass "LTR"; repEnd "104"; repFamily "ERVL"; repLeft "1"; repStart "-452"; ### HERVH_2q36.1c ### chr2 rmsk gene 224225331 224230986 . + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0213"; model_cov "4906"; model_pct "63.6"; chr2 rmsk exon 224225331 224225728 2588 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 224225731 224228693 19131 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr2 rmsk exon 224228688 224228835 798 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 224228826 224229328 3248 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 224229331 224229991 4050 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 224229993 224230209 1293 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 224230210 224230586 2159 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 224230587 224230986 2660 + . gene_id "HERVH_2q36.1c"; transcript_id "HERVH_2q36.1c"; locus "HERVH_2q36.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0213"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_2q36.1d ### chr2 rmsk gene 224296633 224302363 . + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0214"; model_cov "4911"; model_pct "63.7"; chr2 rmsk exon 224296633 224297043 2965 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 224297046 224300081 20943 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr2 rmsk exon 224300068 224300215 871 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 224300206 224300708 3439 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 224300711 224301358 4315 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 224301360 224301575 1356 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 224301576 224301952 2521 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr2 rmsk exon 224301953 224302363 3034 + . gene_id "HERVH_2q36.1d"; transcript_id "HERVH_2q36.1d"; locus "HERVH_2q36.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0214"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_2q36.2 ### chr2 rmsk gene 224827741 224830374 . + . gene_id "ERV316A3_2q36.2"; transcript_id "ERV316A3_2q36.2"; locus "ERV316A3_2q36.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0419"; model_cov "2098"; model_pct "40.1"; chr2 rmsk exon 224827741 224829433 3926 + . gene_id "ERV316A3_2q36.2"; transcript_id "ERV316A3_2q36.2"; locus "ERV316A3_2q36.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0419"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "-3135"; repStart "373"; chr2 rmsk exon 224829552 224829929 1388 + . gene_id "ERV316A3_2q36.2"; transcript_id "ERV316A3_2q36.2"; locus "ERV316A3_2q36.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0419"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "-45"; repStart "4801"; chr2 rmsk exon 224829958 224830374 1231 + . gene_id "ERV316A3_2q36.2"; transcript_id "ERV316A3_2q36.2"; locus "ERV316A3_2q36.2"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0419"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-10"; repStart "1"; ### ERVLE_2q36.2 ### chr2 rmsk gene 225165973 225168652 . - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0638"; model_cov "2259"; model_pct "39.9"; chr2 rmsk exon 225165973 225166369 1166 - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0638"; repClass "LTR"; repEnd "3140"; repFamily "ERVL"; repLeft "2739"; repStart "-2527"; chr2 rmsk exon 225166367 225166711 437 - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0638"; repClass "LTR"; repEnd "1813"; repFamily "ERVL"; repLeft "1451"; repStart "-3854"; chr2 rmsk exon 225166700 225166802 395 - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0638"; repClass "LTR"; repEnd "5487"; repFamily "ERVL"; repLeft "5384"; repStart "-180"; chr2 rmsk exon 225166843 225168092 3224 - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0638"; repClass "LTR"; repEnd "1416"; repFamily "ERVL"; repLeft "100"; repStart "-4251"; chr2 rmsk exon 225168576 225168652 411 - . gene_id "ERVLE_2q36.2"; transcript_id "ERVLE_2q36.2"; locus "ERVLE_2q36.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0638"; repClass "LTR"; repEnd "112"; repFamily "ERVL"; repLeft "35"; repStart "-5555"; ### ERVLB4_2q36.3 ### chr2 rmsk gene 225336560 225338508 . + . gene_id "ERVLB4_2q36.3"; transcript_id "ERVLB4_2q36.3"; locus "ERVLB4_2q36.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0269"; model_cov "1480"; model_pct "25.9"; chr2 rmsk exon 225336560 225337023 1597 + . gene_id "ERVLB4_2q36.3"; transcript_id "ERVLB4_2q36.3"; locus "ERVLB4_2q36.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0269"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 225337026 225338508 6962 + . gene_id "ERVLB4_2q36.3"; transcript_id "ERVLB4_2q36.3"; locus "ERVLB4_2q36.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0269"; repClass "LTR"; repEnd "1481"; repFamily "ERVL"; repLeft "-4233"; repStart "1"; ### ERV316A3_2q36.3a ### chr2 rmsk gene 225508460 225509765 . - . gene_id "ERV316A3_2q36.3a"; transcript_id "ERV316A3_2q36.3a"; locus "ERV316A3_2q36.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0422"; model_cov "674"; model_pct "12.9"; chr2 rmsk exon 225508460 225508918 1345 - . gene_id "ERV316A3_2q36.3a"; transcript_id "ERV316A3_2q36.3a"; locus "ERV316A3_2q36.3a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0422"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr2 rmsk exon 225508919 225509410 2141 - . gene_id "ERV316A3_2q36.3a"; transcript_id "ERV316A3_2q36.3a"; locus "ERV316A3_2q36.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0422"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4730"; repStart "0"; chr2 rmsk exon 225509576 225509765 2141 - . gene_id "ERV316A3_2q36.3a"; transcript_id "ERV316A3_2q36.3a"; locus "ERV316A3_2q36.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0422"; repClass "LTR"; repEnd "4729"; repFamily "ERVL"; repLeft "4551"; repStart "-497"; ### ERVLE_2q36.3a ### chr2 rmsk gene 226226071 226231862 . + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0640"; model_cov "3159"; model_pct "55.7"; chr2 rmsk exon 226226071 226226284 510 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-333"; repStart "111"; chr2 rmsk exon 226226311 226226635 4877 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "2498"; repFamily "ERVL"; repLeft "-3169"; repStart "2170"; chr2 rmsk exon 226226675 226228238 4877 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "4246"; repFamily "ERVL"; repLeft "-1421"; repStart "2499"; chr2 rmsk exon 226228465 226228569 2714 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "-1314"; repStart "4247"; chr2 rmsk exon 226228735 226229103 1483 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "-881"; repStart "4389"; chr2 rmsk exon 226229347 226229690 1382 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "-465"; repStart "4835"; chr2 rmsk exon 226231222 226231425 549 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "5633"; repFamily "ERVL"; repLeft "-34"; repStart "5419"; chr2 rmsk exon 226231434 226231555 271 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "120"; repFamily "ERVL"; repLeft "-543"; repStart "1"; chr2 rmsk exon 226231599 226231862 548 + . gene_id "ERVLE_2q36.3a"; transcript_id "ERVLE_2q36.3a"; locus "ERVLE_2q36.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0640"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "401"; ### ERV316A3_2q36.3b ### chr2 rmsk gene 226350295 226352386 . - . gene_id "ERV316A3_2q36.3b"; transcript_id "ERV316A3_2q36.3b"; locus "ERV316A3_2q36.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0423"; model_cov "1299"; model_pct "24.9"; chr2 rmsk exon 226350295 226350772 1371 - . gene_id "ERV316A3_2q36.3b"; transcript_id "ERV316A3_2q36.3b"; locus "ERV316A3_2q36.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0423"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr2 rmsk exon 226350799 226351224 1450 - . gene_id "ERV316A3_2q36.3b"; transcript_id "ERV316A3_2q36.3b"; locus "ERV316A3_2q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0423"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "4754"; repStart "-31"; chr2 rmsk exon 226351300 226352164 2831 - . gene_id "ERV316A3_2q36.3b"; transcript_id "ERV316A3_2q36.3b"; locus "ERV316A3_2q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0423"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2124"; repStart "-2244"; chr2 rmsk exon 226352221 226352386 424 - . gene_id "ERV316A3_2q36.3b"; transcript_id "ERV316A3_2q36.3b"; locus "ERV316A3_2q36.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0423"; repClass "LTR"; repEnd "173"; repFamily "ERVL"; repLeft "2"; repStart "-307"; ### ERV316A3_2q36.3c ### chr2 rmsk gene 226419339 226422771 . - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0424"; model_cov "1878"; model_pct "35.9"; chr2 rmsk exon 226419339 226419631 427 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "55"; repStart "-2"; chr2 rmsk exon 226419745 226420412 1569 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "4476"; repStart "-57"; chr2 rmsk exon 226420526 226420799 513 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "4036"; repFamily "ERVL"; repLeft "3739"; repStart "-1190"; chr2 rmsk exon 226420799 226420962 538 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "4001"; repFamily "ERVL"; repLeft "3833"; repStart "-1225"; chr2 rmsk exon 226421032 226421147 301 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "3724"; repFamily "ERVL"; repLeft "3601"; repStart "-1502"; chr2 rmsk exon 226421150 226421268 266 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "3145"; repStart "-1960"; chr2 rmsk exon 226421997 226422277 902 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "2758"; repStart "-2161"; chr2 rmsk exon 226422603 226422771 371 - . gene_id "ERV316A3_2q36.3c"; transcript_id "ERV316A3_2q36.3c"; locus "ERV316A3_2q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0424"; repClass "LTR"; repEnd "2847"; repFamily "ERVL"; repLeft "2678"; repStart "-2379"; ### ERVLE_2q36.3b ### chr2 rmsk gene 226605006 226605813 . - . gene_id "ERVLE_2q36.3b"; transcript_id "ERVLE_2q36.3b"; locus "ERVLE_2q36.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0642"; model_cov "778"; model_pct "13.7"; chr2 rmsk exon 226605006 226605330 521 - . gene_id "ERVLE_2q36.3b"; transcript_id "ERVLE_2q36.3b"; locus "ERVLE_2q36.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0642"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5339"; repStart "-1"; chr2 rmsk exon 226605380 226605813 1194 - . gene_id "ERVLE_2q36.3b"; transcript_id "ERVLE_2q36.3b"; locus "ERVLE_2q36.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0642"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "4806"; repStart "-410"; ### ERVLE_2q36.3c ### chr2 rmsk gene 227856902 227859716 . - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0643"; model_cov "1562"; model_pct "27.6"; chr2 rmsk exon 227856902 227857184 364 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "5376"; repStart "-7"; chr2 rmsk exon 227857839 227857870 364 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "5375"; repFamily "ERVL"; repLeft "5344"; repStart "-292"; chr2 rmsk exon 227857883 227858590 838 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "5311"; repFamily "ERVL"; repLeft "4536"; repStart "-356"; chr2 rmsk exon 227858888 227858935 838 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "4536"; repStart "-1085"; chr2 rmsk exon 227858990 227859078 523 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "4421"; repFamily "ERVL"; repLeft "4329"; repStart "-1246"; chr2 rmsk exon 227859371 227859716 523 - . gene_id "ERVLE_2q36.3c"; transcript_id "ERVLE_2q36.3c"; locus "ERVLE_2q36.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0643"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "3994"; repStart "-1339"; ### HUERSP3_2q36.3 ### chr2 rmsk gene 228299817 228309450 . - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0035"; model_cov "8324"; model_pct "93.3"; chr2 rmsk exon 228299817 228300426 3576 - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0035"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "7"; repStart "0"; chr2 rmsk exon 228300435 228302482 12788 - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0035"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "6845"; repStart "-4"; chr2 rmsk exon 228302476 228308161 36853 - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0035"; repClass "LTR"; repEnd "6625"; repFamily "ERV1"; repLeft "880"; repStart "-2294"; chr2 rmsk exon 228308257 228308776 2051 - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0035"; repClass "LTR"; repEnd "2011"; repFamily "ERV1"; repLeft "1502"; repStart "-6908"; chr2 rmsk exon 228308777 228309450 3514 - . gene_id "HUERSP3_2q36.3"; transcript_id "HUERSP3_2q36.3"; locus "HUERSP3_2q36.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0035"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### ERV316A3_2q36.3d ### chr2 rmsk gene 228336903 228338384 . + . gene_id "ERV316A3_2q36.3d"; transcript_id "ERV316A3_2q36.3d"; locus "ERV316A3_2q36.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0425"; model_cov "1430"; model_pct "27.4"; chr2 rmsk exon 228336903 228337133 488 + . gene_id "ERV316A3_2q36.3d"; transcript_id "ERV316A3_2q36.3d"; locus "ERV316A3_2q36.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0425"; repClass "LTR"; repEnd "3014"; repFamily "ERVL"; repLeft "-2212"; repStart "2736"; chr2 rmsk exon 228337335 228337535 1443 + . gene_id "ERV316A3_2q36.3d"; transcript_id "ERV316A3_2q36.3d"; locus "ERV316A3_2q36.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0425"; repClass "LTR"; repEnd "3655"; repFamily "ERVL"; repLeft "-1571"; repStart "3327"; chr2 rmsk exon 228337770 228338384 1443 + . gene_id "ERV316A3_2q36.3d"; transcript_id "ERV316A3_2q36.3d"; locus "ERV316A3_2q36.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0425"; repClass "LTR"; repEnd "4265"; repFamily "ERVL"; repLeft "-961"; repStart "3441"; ### ERVLE_2q36.3d ### chr2 rmsk gene 228338769 228341491 . + . gene_id "ERVLE_2q36.3d"; transcript_id "ERVLE_2q36.3d"; locus "ERVLE_2q36.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0644"; model_cov "687"; model_pct "12.1"; chr2 rmsk exon 228338769 228339100 924 + . gene_id "ERVLE_2q36.3d"; transcript_id "ERVLE_2q36.3d"; locus "ERVLE_2q36.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0644"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "-818"; repStart "4508"; chr2 rmsk exon 228341161 228341491 919 + . gene_id "ERVLE_2q36.3d"; transcript_id "ERVLE_2q36.3d"; locus "ERVLE_2q36.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0644"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "-468"; repStart "4853"; ### LTR57_2q36.3 ### chr2 rmsk gene 228367451 228374329 . + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0033"; model_cov "4809"; model_pct "90.0"; chr2 rmsk exon 228367451 228367853 1966 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 228367854 228367968 6939 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "111"; repFamily "ERVL"; repLeft "-5232"; repStart "1"; chr2 rmsk exon 228368276 228369039 6939 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "904"; repFamily "ERVL"; repLeft "-4439"; repStart "112"; chr2 rmsk exon 228369334 228369736 6939 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "1309"; repFamily "ERVL"; repLeft "-4034"; repStart "905"; chr2 rmsk exon 228369731 228370957 19988 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "2998"; repFamily "ERVL"; repLeft "-2345"; repStart "1838"; chr2 rmsk exon 228371269 228373240 19988 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "5027"; repFamily "ERVL"; repLeft "-316"; repStart "2999"; chr2 rmsk exon 228373652 228373970 19988 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "5028"; chr2 rmsk exon 228373973 228374329 1164 + . gene_id "LTR57_2q36.3"; transcript_id "LTR57_2q36.3"; locus "LTR57_2q36.3"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0033"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-7"; repStart "3"; ### MER4_2q36.3a ### chr2 rmsk gene 228531413 228532855 . + . gene_id "MER4_2q36.3a"; transcript_id "MER4_2q36.3a"; locus "MER4_2q36.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0122"; model_cov "848"; model_pct "12.9"; chr2 rmsk exon 228531413 228531862 3128 + . gene_id "MER4_2q36.3a"; transcript_id "MER4_2q36.3a"; locus "MER4_2q36.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0122"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 228531864 228532371 2540 + . gene_id "MER4_2q36.3a"; transcript_id "MER4_2q36.3a"; locus "MER4_2q36.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0122"; repClass "LTR"; repEnd "-1199"; repFamily "ERV1"; repLeft "-7797"; repStart "-1671"; chr2 rmsk exon 228532347 228532414 273 + . gene_id "MER4_2q36.3a"; transcript_id "MER4_2q36.3a"; locus "MER4_2q36.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0122"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "619"; chr2 rmsk exon 228532563 228532855 1175 + . gene_id "MER4_2q36.3a"; transcript_id "MER4_2q36.3a"; locus "MER4_2q36.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0122"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2119"; ### MER4B_2q36.3 ### chr2 rmsk gene 228532926 228535315 . + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0077"; model_cov "1886"; model_pct "27.9"; chr2 rmsk exon 228532926 228533458 5742 + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0077"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "-6024"; repStart "199"; chr2 rmsk exon 228533496 228533901 5742 + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0077"; repClass "LTR"; repEnd "1188"; repFamily "ERV1"; repLeft "-5570"; repStart "735"; chr2 rmsk exon 228533932 228533973 2999 + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0077"; repClass "LTR"; repEnd "2132"; repFamily "ERV1"; repLeft "-4626"; repStart "2072"; chr2 rmsk exon 228534284 228534773 2999 + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0077"; repClass "LTR"; repEnd "2654"; repFamily "ERV1"; repLeft "-4104"; repStart "2133"; chr2 rmsk exon 228534999 228535315 1785 + . gene_id "MER4B_2q36.3"; transcript_id "MER4B_2q36.3"; locus "MER4B_2q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0077"; repClass "LTR"; repEnd "3214"; repFamily "ERV1"; repLeft "-3544"; repStart "2897"; ### MER4_2q36.3b ### chr2 rmsk gene 228535443 228538750 . + . gene_id "MER4_2q36.3b"; transcript_id "MER4_2q36.3b"; locus "MER4_2q36.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0123"; model_cov "2896"; model_pct "43.9"; chr2 rmsk exon 228535443 228535661 811 + . gene_id "MER4_2q36.3b"; transcript_id "MER4_2q36.3b"; locus "MER4_2q36.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0123"; repClass "LTR"; repEnd "2059"; repFamily "ERV1"; repLeft "-4539"; repStart "1878"; chr2 rmsk exon 228535640 228538278 15688 + . gene_id "MER4_2q36.3b"; transcript_id "MER4_2q36.3b"; locus "MER4_2q36.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0123"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3881"; chr2 rmsk exon 228538287 228538750 3349 + . gene_id "MER4_2q36.3b"; transcript_id "MER4_2q36.3b"; locus "MER4_2q36.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0123"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_2q36.3e ### chr2 rmsk gene 228600228 228601553 . - . gene_id "ERVLE_2q36.3e"; transcript_id "ERVLE_2q36.3e"; locus "ERVLE_2q36.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0645"; model_cov "1169"; model_pct "20.6"; chr2 rmsk exon 228600228 228600630 795 - . gene_id "ERVLE_2q36.3e"; transcript_id "ERVLE_2q36.3e"; locus "ERVLE_2q36.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0645"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4295"; repStart "-949"; chr2 rmsk exon 228600833 228601553 1633 - . gene_id "ERVLE_2q36.3e"; transcript_id "ERVLE_2q36.3e"; locus "ERVLE_2q36.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0645"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "3298"; repStart "-1623"; ### ERVLE_2q36.3f ### chr2 rmsk gene 228914491 228917849 . + . gene_id "ERVLE_2q36.3f"; transcript_id "ERVLE_2q36.3f"; locus "ERVLE_2q36.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0647"; model_cov "2820"; model_pct "49.8"; chr2 rmsk exon 228914491 228914602 6400 + . gene_id "ERVLE_2q36.3f"; transcript_id "ERVLE_2q36.3f"; locus "ERVLE_2q36.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0647"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "-5553"; repStart "2"; chr2 rmsk exon 228914967 228917043 6400 + . gene_id "ERVLE_2q36.3f"; transcript_id "ERVLE_2q36.3f"; locus "ERVLE_2q36.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0647"; repClass "LTR"; repEnd "2236"; repFamily "ERVL"; repLeft "-3431"; repStart "115"; chr2 rmsk exon 228917265 228917849 2068 + . gene_id "ERVLE_2q36.3f"; transcript_id "ERVLE_2q36.3f"; locus "ERVLE_2q36.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0647"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "-2542"; repStart "2538"; ### MER101_2q36.3 ### chr2 rmsk gene 230029828 230031551 . - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0080"; model_cov "757"; model_pct "11.4"; chr2 rmsk exon 230029828 230029893 3014 - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0080"; repClass "LTR"; repEnd "2119"; repFamily "ERV1"; repLeft "2060"; repStart "-4520"; chr2 rmsk exon 230029923 230029967 3014 - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0080"; repClass "LTR"; repEnd "2059"; repFamily "ERV1"; repLeft "2044"; repStart "-4580"; chr2 rmsk exon 230030270 230030480 3014 - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0080"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1829"; repStart "-4596"; chr2 rmsk exon 230030784 230030870 3014 - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0080"; repClass "LTR"; repEnd "1828"; repFamily "ERV1"; repLeft "1740"; repStart "-4811"; chr2 rmsk exon 230031168 230031551 3014 - . gene_id "MER101_2q36.3"; transcript_id "MER101_2q36.3"; locus "MER101_2q36.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0080"; repClass "LTR"; repEnd "1739"; repFamily "ERV1"; repLeft "1358"; repStart "-4900"; ### HERVL_2q37.1 ### chr2 rmsk gene 230119588 230123285 . + . gene_id "HERVL_2q37.1"; transcript_id "HERVL_2q37.1"; locus "HERVL_2q37.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0227"; model_cov "2591"; model_pct "45.8"; chr2 rmsk exon 230119588 230120015 3100 + . gene_id "HERVL_2q37.1"; transcript_id "HERVL_2q37.1"; locus "HERVL_2q37.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0227"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr2 rmsk exon 230120030 230122600 20739 + . gene_id "HERVL_2q37.1"; transcript_id "HERVL_2q37.1"; locus "HERVL_2q37.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0227"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3063"; chr2 rmsk exon 230122601 230122988 3053 + . gene_id "HERVL_2q37.1"; transcript_id "HERVL_2q37.1"; locus "HERVL_2q37.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0227"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr2 rmsk exon 230123224 230123285 311 + . gene_id "HERVL_2q37.1"; transcript_id "HERVL_2q37.1"; locus "HERVL_2q37.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0227"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "378"; ### ERV316A3_2q37.1a ### chr2 rmsk gene 230403818 230406889 . + . gene_id "ERV316A3_2q37.1a"; transcript_id "ERV316A3_2q37.1a"; locus "ERV316A3_2q37.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0428"; model_cov "2111"; model_pct "40.4"; chr2 rmsk exon 230403818 230404188 527 + . gene_id "ERV316A3_2q37.1a"; transcript_id "ERV316A3_2q37.1a"; locus "ERV316A3_2q37.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0428"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-4"; repStart "11"; chr2 rmsk exon 230404660 230404788 253 + . gene_id "ERV316A3_2q37.1a"; transcript_id "ERV316A3_2q37.1a"; locus "ERV316A3_2q37.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0428"; repClass "LTR"; repEnd "660"; repFamily "ERVL"; repLeft "-4566"; repStart "533"; chr2 rmsk exon 230404883 230406889 2973 + . gene_id "ERV316A3_2q37.1a"; transcript_id "ERV316A3_2q37.1a"; locus "ERV316A3_2q37.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0428"; repClass "LTR"; repEnd "2806"; repFamily "ERVL"; repLeft "-2420"; repStart "822"; ### ERVL_2q37.1 ### chr2 rmsk gene 230546675 230547350 . + . gene_id "ERVL_2q37.1"; transcript_id "ERVL_2q37.1"; locus "ERVL_2q37.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0062"; model_cov "664"; model_pct "11.5"; chr2 rmsk exon 230546675 230546919 583 + . gene_id "ERVL_2q37.1"; transcript_id "ERVL_2q37.1"; locus "ERVL_2q37.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0062"; repClass "LTR"; repEnd "2295"; repFamily "ERVL"; repLeft "-3462"; repStart "2050"; chr2 rmsk exon 230546924 230547350 497 + . gene_id "ERVL_2q37.1"; transcript_id "ERVL_2q37.1"; locus "ERVL_2q37.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0062"; repClass "LTR"; repEnd "3091"; repFamily "ERVL"; repLeft "-2666"; repStart "2672"; ### HML5_2q37.1 ### chr2 rmsk gene 231091002 231096573 . - . gene_id "HML5_2q37.1"; transcript_id "HML5_2q37.1"; locus "HML5_2q37.1"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0023"; model_cov "5098"; model_pct "74.6"; chr2 rmsk exon 231091002 231091461 2704 - . gene_id "HML5_2q37.1"; transcript_id "HML5_2q37.1"; locus "HML5_2q37.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0023"; repClass "LTR"; repEnd "503"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chr2 rmsk exon 231091466 231093122 11754 - . gene_id "HML5_2q37.1"; transcript_id "HML5_2q37.1"; locus "HML5_2q37.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0023"; repClass "LTR"; repEnd "6836"; repFamily "ERVK"; repLeft "5173"; repStart "-1"; chr2 rmsk exon 231093121 231096070 20919 - . gene_id "HML5_2q37.1"; transcript_id "HML5_2q37.1"; locus "HML5_2q37.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0023"; repClass "LTR"; repEnd "5250"; repFamily "ERVK"; repLeft "2314"; repStart "-1587"; chr2 rmsk exon 231096074 231096573 3442 - . gene_id "HML5_2q37.1"; transcript_id "HML5_2q37.1"; locus "HML5_2q37.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0023"; repClass "LTR"; repEnd "772"; repFamily "ERVK"; repLeft "273"; repStart "-6065"; ### HERVIP10F_2q37.1 ### chr2 rmsk gene 231096574 231100693 . - . gene_id "HERVIP10F_2q37.1"; transcript_id "HERVIP10F_2q37.1"; locus "HERVIP10F_2q37.1"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0024"; model_cov "2490"; model_pct "32.2"; chr2 rmsk exon 231096574 231097045 3448 - . gene_id "HERVIP10F_2q37.1"; transcript_id "HERVIP10F_2q37.1"; locus "HERVIP10F_2q37.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0024"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 231097049 231098105 7929 - . gene_id "HERVIP10F_2q37.1"; transcript_id "HERVIP10F_2q37.1"; locus "HERVIP10F_2q37.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0024"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "6673"; repStart "-4"; chr2 rmsk exon 231098681 231100163 7931 - . gene_id "HERVIP10F_2q37.1"; transcript_id "HERVIP10F_2q37.1"; locus "HERVIP10F_2q37.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0024"; repClass "LTR"; repEnd "1565"; repFamily "ERV1"; repLeft "135"; repStart "-6172"; chr2 rmsk exon 231100164 231100693 3129 - . gene_id "HERVIP10F_2q37.1"; transcript_id "HERVIP10F_2q37.1"; locus "HERVIP10F_2q37.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0024"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_2q37.1 ### chr2 rmsk gene 231098104 231098700 . - . gene_id "HERVIP10FH_2q37.1"; transcript_id "HERVIP10FH_2q37.1"; locus "HERVIP10FH_2q37.1"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0033"; model_cov "578"; model_pct "11.3"; chr2 rmsk exon 231098104 231098700 3573 - . gene_id "HERVIP10FH_2q37.1"; transcript_id "HERVIP10FH_2q37.1"; locus "HERVIP10FH_2q37.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0033"; repClass "LTR"; repEnd "1265"; repFamily "ERV1"; repLeft "687"; repStart "-3837"; ### HERVE_2q37.1 ### chr2 rmsk gene 231400712 231408843 . + . gene_id "HERVE_2q37.1"; transcript_id "HERVE_2q37.1"; locus "HERVE_2q37.1"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0019"; model_cov "7152"; model_pct "91.5"; chr2 rmsk exon 231400712 231401206 4157 + . gene_id "HERVE_2q37.1"; transcript_id "HERVE_2q37.1"; locus "HERVE_2q37.1"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0019"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2 rmsk exon 231401207 231405702 34360 + . gene_id "HERVE_2q37.1"; transcript_id "HERVE_2q37.1"; locus "HERVE_2q37.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0019"; repClass "LTR"; repEnd "4470"; repFamily "ERV1"; repLeft "-3343"; repStart "1"; chr2 rmsk exon 231405686 231408345 21150 + . gene_id "HERVE_2q37.1"; transcript_id "HERVE_2q37.1"; locus "HERVE_2q37.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0019"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "5129"; chr2 rmsk exon 231408346 231408843 4141 + . gene_id "HERVE_2q37.1"; transcript_id "HERVE_2q37.1"; locus "HERVE_2q37.1"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0019"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_2q37.1a ### chr2 rmsk gene 231430886 231432394 . - . gene_id "HERVH_2q37.1a"; transcript_id "HERVH_2q37.1a"; locus "HERVH_2q37.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0216"; model_cov "1257"; model_pct "16.3"; chr2 rmsk exon 231430886 231430911 3126 - . gene_id "HERVH_2q37.1a"; transcript_id "HERVH_2q37.1a"; locus "HERVH_2q37.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0216"; repClass "LTR"; repEnd "26"; repFamily "ERV1"; repLeft "1"; repStart "-445"; chr2 rmsk exon 231431063 231431440 1686 - . gene_id "HERVH_2q37.1a"; transcript_id "HERVH_2q37.1a"; locus "HERVH_2q37.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0216"; repClass "LTR"; repEnd "5909"; repFamily "ERV1"; repLeft "5539"; repStart "-1804"; chr2 rmsk exon 231431441 231432394 2868 - . gene_id "HERVH_2q37.1a"; transcript_id "HERVH_2q37.1a"; locus "HERVH_2q37.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0216"; repClass "LTR"; repEnd "4443"; repFamily "ERV1"; repLeft "3556"; repStart "-3270"; ### ERVLE_2q37.1 ### chr2 rmsk gene 232157475 232158198 . - . gene_id "ERVLE_2q37.1"; transcript_id "ERVLE_2q37.1"; locus "ERVLE_2q37.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0649"; model_cov "741"; model_pct "13.1"; chr2 rmsk exon 232157475 232157877 648 - . gene_id "ERVLE_2q37.1"; transcript_id "ERVLE_2q37.1"; locus "ERVLE_2q37.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0649"; repClass "LTR"; repEnd "4525"; repFamily "ERVL"; repLeft "4093"; repStart "-1142"; chr2 rmsk exon 232157896 232158198 664 - . gene_id "ERVLE_2q37.1"; transcript_id "ERVLE_2q37.1"; locus "ERVLE_2q37.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0649"; repClass "LTR"; repEnd "3959"; repFamily "ERVL"; repLeft "3650"; repStart "-1708"; ### LTR57_2q37.1 ### chr2 rmsk gene 232393184 232394107 . + . gene_id "LTR57_2q37.1"; transcript_id "LTR57_2q37.1"; locus "LTR57_2q37.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0035"; model_cov "649"; model_pct "12.1"; chr2 rmsk exon 232393184 232393249 1404 + . gene_id "LTR57_2q37.1"; transcript_id "LTR57_2q37.1"; locus "LTR57_2q37.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0035"; repClass "LTR"; repEnd "1075"; repFamily "ERVL"; repLeft "-4268"; repStart "876"; chr2 rmsk exon 232393681 232394107 1404 + . gene_id "LTR57_2q37.1"; transcript_id "LTR57_2q37.1"; locus "LTR57_2q37.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0035"; repClass "LTR"; repEnd "1526"; repFamily "ERVL"; repLeft "-3817"; repStart "1076"; ### MER101_2q37.1 ### chr2 rmsk gene 232395334 232398361 . + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0081"; model_cov "1224"; model_pct "18.4"; chr2 rmsk exon 232395334 232395374 877 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-6402"; repStart "199"; chr2 rmsk exon 232395493 232395928 1116 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "-4095"; repStart "1719"; chr2 rmsk exon 232396649 232396769 460 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "2679"; repFamily "ERV1"; repLeft "-3960"; repStart "2551"; chr2 rmsk exon 232397012 232397133 401 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "3837"; repFamily "ERV1"; repLeft "-2802"; repStart "3784"; chr2 rmsk exon 232397768 232397931 401 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "3838"; chr2 rmsk exon 232398242 232398361 310 + . gene_id "MER101_2q37.1"; transcript_id "MER101_2q37.1"; locus "MER101_2q37.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0081"; repClass "LTR"; repEnd "5064"; repFamily "ERV1"; repLeft "-1575"; repStart "4962"; ### ERVLB4_2q37.1a ### chr2 rmsk gene 232585232 232586053 . - . gene_id "ERVLB4_2q37.1a"; transcript_id "ERVLB4_2q37.1a"; locus "ERVLB4_2q37.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0272"; model_cov "996"; model_pct "17.4"; chr2 rmsk exon 232585232 232585412 506 - . gene_id "ERVLB4_2q37.1a"; transcript_id "ERVLB4_2q37.1a"; locus "ERVLB4_2q37.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0272"; repClass "LTR"; repEnd "5309"; repFamily "ERVL"; repLeft "5114"; repStart "-405"; chr2 rmsk exon 232585446 232585682 603 - . gene_id "ERVLB4_2q37.1a"; transcript_id "ERVLB4_2q37.1a"; locus "ERVLB4_2q37.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0272"; repClass "LTR"; repEnd "5075"; repFamily "ERVL"; repLeft "4755"; repStart "-639"; chr2 rmsk exon 232585681 232586053 848 - . gene_id "ERVLB4_2q37.1a"; transcript_id "ERVLB4_2q37.1a"; locus "ERVLB4_2q37.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0272"; repClass "LTR"; repEnd "4636"; repFamily "ERVL"; repLeft "4155"; repStart "-1078"; ### ERVLB4_2q37.1b ### chr2 rmsk gene 232867729 232869107 . - . gene_id "ERVLB4_2q37.1b"; transcript_id "ERVLB4_2q37.1b"; locus "ERVLB4_2q37.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0273"; model_cov "889"; model_pct "15.6"; chr2 rmsk exon 232867729 232868122 687 - . gene_id "ERVLB4_2q37.1b"; transcript_id "ERVLB4_2q37.1b"; locus "ERVLB4_2q37.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0273"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "1554"; repStart "-3672"; chr2 rmsk exon 232868436 232868703 374 - . gene_id "ERVLB4_2q37.1b"; transcript_id "ERVLB4_2q37.1b"; locus "ERVLB4_2q37.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0273"; repClass "LTR"; repEnd "1488"; repFamily "ERVL"; repLeft "1210"; repStart "-4226"; chr2 rmsk exon 232868987 232869107 296 - . gene_id "ERVLB4_2q37.1b"; transcript_id "ERVLB4_2q37.1b"; locus "ERVLB4_2q37.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0273"; repClass "LTR"; repEnd "946"; repFamily "ERVL"; repLeft "823"; repStart "-4768"; ### HERVH_2q37.1b ### chr2 rmsk gene 233214800 233217821 . - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0217"; model_cov "2967"; model_pct "38.5"; chr2 rmsk exon 233214800 233215313 1810 - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0217"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "146"; repStart "0"; chr2 rmsk exon 233215292 233215552 1767 - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0217"; repClass "LTR"; repEnd "264"; repFamily "ERV1"; repLeft "1"; repStart "-200"; chr2 rmsk exon 233215553 233216097 3465 - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0217"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr2 rmsk exon 233216091 233217693 6207 - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0217"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "3605"; repStart "-1697"; chr2 rmsk exon 233217700 233217821 920 - . gene_id "HERVH_2q37.1b"; transcript_id "HERVH_2q37.1b"; locus "HERVH_2q37.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0217"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "341"; repStart "0"; ### ERV316A3_2q37.1b ### chr2 rmsk gene 234616758 234619051 . + . gene_id "ERV316A3_2q37.1b"; transcript_id "ERV316A3_2q37.1b"; locus "ERV316A3_2q37.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0429"; model_cov "1873"; model_pct "35.8"; chr2 rmsk exon 234616758 234617470 1759 + . gene_id "ERV316A3_2q37.1b"; transcript_id "ERV316A3_2q37.1b"; locus "ERV316A3_2q37.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0429"; repClass "LTR"; repEnd "1806"; repFamily "ERVL"; repLeft "-3420"; repStart "1059"; chr2 rmsk exon 234617638 234617760 407 + . gene_id "ERV316A3_2q37.1b"; transcript_id "ERV316A3_2q37.1b"; locus "ERV316A3_2q37.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0429"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "-3393"; repStart "1709"; chr2 rmsk exon 234617784 234618466 2093 + . gene_id "ERV316A3_2q37.1b"; transcript_id "ERV316A3_2q37.1b"; locus "ERV316A3_2q37.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0429"; repClass "LTR"; repEnd "2600"; repFamily "ERVL"; repLeft "-2626"; repStart "1885"; chr2 rmsk exon 234618778 234619051 2093 + . gene_id "ERV316A3_2q37.1b"; transcript_id "ERV316A3_2q37.1b"; locus "ERV316A3_2q37.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0429"; repClass "LTR"; repEnd "2888"; repFamily "ERVL"; repLeft "-2338"; repStart "2601"; ### ERV316A3_2q37.2a ### chr2 rmsk gene 234797371 234798031 . + . gene_id "ERV316A3_2q37.2a"; transcript_id "ERV316A3_2q37.2a"; locus "ERV316A3_2q37.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0430"; model_cov "647"; model_pct "12.4"; chr2 rmsk exon 234797371 234798031 2172 + . gene_id "ERV316A3_2q37.2a"; transcript_id "ERV316A3_2q37.2a"; locus "ERV316A3_2q37.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0430"; repClass "LTR"; repEnd "4226"; repFamily "ERVL"; repLeft "-1000"; repStart "3579"; ### ERV316A3_2q37.2b ### chr2 rmsk gene 235197910 235199341 . - . gene_id "ERV316A3_2q37.2b"; transcript_id "ERV316A3_2q37.2b"; locus "ERV316A3_2q37.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0431"; model_cov "680"; model_pct "13.0"; chr2 rmsk exon 235197910 235198220 594 - . gene_id "ERV316A3_2q37.2b"; transcript_id "ERV316A3_2q37.2b"; locus "ERV316A3_2q37.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0431"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "30"; repStart "0"; chr2 rmsk exon 235198250 235198868 1475 - . gene_id "ERV316A3_2q37.2b"; transcript_id "ERV316A3_2q37.2b"; locus "ERV316A3_2q37.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0431"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4546"; repStart "0"; chr2 rmsk exon 235198874 235199116 709 - . gene_id "ERV316A3_2q37.2b"; transcript_id "ERV316A3_2q37.2b"; locus "ERV316A3_2q37.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0431"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "186"; repStart "-1"; chr2 rmsk exon 235199111 235199341 306 - . gene_id "ERV316A3_2q37.2b"; transcript_id "ERV316A3_2q37.2b"; locus "ERV316A3_2q37.2b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0431"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "170"; repStart "-75"; ### ERVLE_2q37.3a ### chr2 rmsk gene 237115095 237116613 . + . gene_id "ERVLE_2q37.3a"; transcript_id "ERVLE_2q37.3a"; locus "ERVLE_2q37.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0652"; model_cov "1407"; model_pct "24.8"; chr2 rmsk exon 237115095 237115532 2716 + . gene_id "ERVLE_2q37.3a"; transcript_id "ERVLE_2q37.3a"; locus "ERVLE_2q37.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0652"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "-1890"; repStart "3354"; chr2 rmsk exon 237115659 237116613 2716 + . gene_id "ERVLE_2q37.3a"; transcript_id "ERVLE_2q37.3a"; locus "ERVLE_2q37.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0652"; repClass "LTR"; repEnd "4762"; repFamily "ERVL"; repLeft "-905"; repStart "3778"; ### ERVLE_2q37.3b ### chr2 rmsk gene 237234110 237236031 . - . gene_id "ERVLE_2q37.3b"; transcript_id "ERVLE_2q37.3b"; locus "ERVLE_2q37.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0655"; model_cov "1488"; model_pct "26.3"; chr2 rmsk exon 237234110 237234370 356 - . gene_id "ERVLE_2q37.3b"; transcript_id "ERVLE_2q37.3b"; locus "ERVLE_2q37.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0655"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "5020"; repStart "-393"; chr2 rmsk exon 237234836 237234909 264 - . gene_id "ERVLE_2q37.3b"; transcript_id "ERVLE_2q37.3b"; locus "ERVLE_2q37.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0655"; repClass "LTR"; repEnd "4734"; repFamily "ERVL"; repLeft "4661"; repStart "-933"; chr2 rmsk exon 237234941 237236031 2545 - . gene_id "ERVLE_2q37.3b"; transcript_id "ERVLE_2q37.3b"; locus "ERVLE_2q37.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0655"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "2560"; repStart "-1946"; ### ERVLE_2q37.3c ### chr2 rmsk gene 237241635 237243000 . + . gene_id "ERVLE_2q37.3c"; transcript_id "ERVLE_2q37.3c"; locus "ERVLE_2q37.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0656"; model_cov "1485"; model_pct "26.2"; chr2 rmsk exon 237241635 237243000 1093 + . gene_id "ERVLE_2q37.3c"; transcript_id "ERVLE_2q37.3c"; locus "ERVLE_2q37.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0656"; repClass "LTR"; repEnd "1692"; repFamily "ERVL"; repLeft "-3975"; repStart "207"; ### HERVL_2q37.3 ### chr2 rmsk gene 237243439 237247012 . - . gene_id "HERVL_2q37.3"; transcript_id "HERVL_2q37.3"; locus "HERVL_2q37.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0229"; model_cov "3075"; model_pct "54.4"; chr2 rmsk exon 237243439 237243481 339 - . gene_id "HERVL_2q37.3"; transcript_id "HERVL_2q37.3"; locus "HERVL_2q37.3"; repName "MLT2B4"; geneRegion "ltr"; locid "HERVL-int_0229"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "514"; repStart "0"; chr2 rmsk exon 237243544 237243988 1484 - . gene_id "HERVL_2q37.3"; transcript_id "HERVL_2q37.3"; locus "HERVL_2q37.3"; repName "MLT2B4"; geneRegion "ltr"; locid "HERVL-int_0229"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "2"; repStart "-46"; chr2 rmsk exon 237243990 237247012 15298 - . gene_id "HERVL_2q37.3"; transcript_id "HERVL_2q37.3"; locus "HERVL_2q37.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0229"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "2578"; repStart "-1"; ### ERVLB4_2q37.3a ### chr2 rmsk gene 237247001 237250455 . - . gene_id "ERVLB4_2q37.3a"; transcript_id "ERVLB4_2q37.3a"; locus "ERVLB4_2q37.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0274"; model_cov "1135"; model_pct "19.9"; chr2 rmsk exon 237247001 237247129 756 - . gene_id "ERVLB4_2q37.3a"; transcript_id "ERVLB4_2q37.3a"; locus "ERVLB4_2q37.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0274"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "1004"; repStart "-4578"; chr2 rmsk exon 237248767 237249727 4660 - . gene_id "ERVLB4_2q37.3a"; transcript_id "ERVLB4_2q37.3a"; locus "ERVLB4_2q37.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0274"; repClass "LTR"; repEnd "1004"; repFamily "ERVL"; repLeft "1"; repStart "-4710"; chr2 rmsk exon 237249738 237250042 1352 - . gene_id "ERVLB4_2q37.3a"; transcript_id "ERVLB4_2q37.3a"; locus "ERVLB4_2q37.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0274"; repClass "LTR"; repEnd "523"; repFamily "ERVL"; repLeft "100"; repStart "-33"; chr2 rmsk exon 237250349 237250455 1352 - . gene_id "ERVLB4_2q37.3a"; transcript_id "ERVLB4_2q37.3a"; locus "ERVLB4_2q37.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0274"; repClass "LTR"; repEnd "101"; repFamily "ERVL"; repLeft "3"; repStart "-455"; ### ERVLE_2q37.3d ### chr2 rmsk gene 237302211 237307008 . - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0657"; model_cov "2081"; model_pct "36.7"; chr2 rmsk exon 237302211 237302423 1612 - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0657"; repClass "LTR"; repEnd "5579"; repFamily "ERVL"; repLeft "5385"; repStart "-88"; chr2 rmsk exon 237304692 237305536 1612 - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0657"; repClass "LTR"; repEnd "5384"; repFamily "ERVL"; repLeft "4535"; repStart "-283"; chr2 rmsk exon 237305853 237306539 989 - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0657"; repClass "LTR"; repEnd "4526"; repFamily "ERVL"; repLeft "3742"; repStart "-1141"; chr2 rmsk exon 237306649 237306771 289 - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0657"; repClass "LTR"; repEnd "3735"; repFamily "ERVL"; repLeft "3610"; repStart "-1932"; chr2 rmsk exon 237306880 237307008 254 - . gene_id "ERVLE_2q37.3d"; transcript_id "ERVLE_2q37.3d"; locus "ERVLE_2q37.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0657"; repClass "LTR"; repEnd "3261"; repFamily "ERVL"; repLeft "3132"; repStart "-2406"; ### ERVLE_2q37.3e ### chr2 rmsk gene 237477585 237479671 . - . gene_id "ERVLE_2q37.3e"; transcript_id "ERVLE_2q37.3e"; locus "ERVLE_2q37.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0658"; model_cov "2136"; model_pct "37.7"; chr2 rmsk exon 237477585 237477804 405 - . gene_id "ERVLE_2q37.3e"; transcript_id "ERVLE_2q37.3e"; locus "ERVLE_2q37.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0658"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "3799"; repStart "-1630"; chr2 rmsk exon 237477803 237478330 953 - . gene_id "ERVLE_2q37.3e"; transcript_id "ERVLE_2q37.3e"; locus "ERVLE_2q37.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0658"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "2404"; repStart "-2609"; chr2 rmsk exon 237478352 237479142 1888 - . gene_id "ERVLE_2q37.3e"; transcript_id "ERVLE_2q37.3e"; locus "ERVLE_2q37.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0658"; repClass "LTR"; repEnd "1909"; repFamily "ERVL"; repLeft "1107"; repStart "-3758"; chr2 rmsk exon 237479260 237479671 475 - . gene_id "ERVLE_2q37.3e"; transcript_id "ERVLE_2q37.3e"; locus "ERVLE_2q37.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0658"; repClass "LTR"; repEnd "946"; repFamily "ERVL"; repLeft "504"; repStart "-4721"; ### HERVH_2q37.3 ### chr2 rmsk gene 237606784 237612654 . + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0218"; model_cov "4906"; model_pct "63.6"; chr2 rmsk exon 237606784 237607195 2955 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr2 rmsk exon 237607198 237610351 16028 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "1"; chr2 rmsk exon 237610348 237610495 851 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr2 rmsk exon 237610486 237610988 3422 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr2 rmsk exon 237610991 237611651 4424 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr2 rmsk exon 237611653 237611869 1367 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr2 rmsk exon 237611868 237612242 2303 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr2 rmsk exon 237612243 237612654 2956 + . gene_id "HERVH_2q37.3"; transcript_id "HERVH_2q37.3"; locus "HERVH_2q37.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0218"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFH19_2q37.3 ### chr2 rmsk gene 238204918 238211673 . - . gene_id "HERVFH19_2q37.3"; transcript_id "HERVFH19_2q37.3"; locus "HERVFH19_2q37.3"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0007"; model_cov "6042"; model_pct "78.3"; chr2 rmsk exon 238204918 238205333 2008 - . gene_id "HERVFH19_2q37.3"; transcript_id "HERVFH19_2q37.3"; locus "HERVFH19_2q37.3"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0007"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 238205334 238205522 45548 - . gene_id "HERVFH19_2q37.3"; transcript_id "HERVFH19_2q37.3"; locus "HERVFH19_2q37.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0007"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "7541"; repStart "0"; chr2 rmsk exon 238205829 238211673 45548 - . gene_id "HERVFH19_2q37.3"; transcript_id "HERVFH19_2q37.3"; locus "HERVFH19_2q37.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0007"; repClass "LTR"; repEnd "7540"; repFamily "ERV1"; repLeft "1676"; repStart "-179"; ### ERV316A3_2q37.3a ### chr2 rmsk gene 238304163 238309918 . - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0436"; model_cov "4289"; model_pct "82.1"; chr2 rmsk exon 238304163 238305621 7123 - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0436"; repClass "LTR"; repEnd "5071"; repFamily "ERVL"; repLeft "3568"; repStart "-155"; chr2 rmsk exon 238306426 238307553 7123 - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0436"; repClass "LTR"; repEnd "3567"; repFamily "ERVL"; repLeft "2455"; repStart "-1659"; chr2 rmsk exon 238307869 238308858 7123 - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0436"; repClass "LTR"; repEnd "2454"; repFamily "ERVL"; repLeft "1449"; repStart "-2772"; chr2 rmsk exon 238308899 238309581 1624 - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0436"; repClass "LTR"; repEnd "1496"; repFamily "ERVL"; repLeft "827"; repStart "-3730"; chr2 rmsk exon 238309759 238309918 347 - . gene_id "ERV316A3_2q37.3a"; transcript_id "ERV316A3_2q37.3a"; locus "ERV316A3_2q37.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0436"; repClass "LTR"; repEnd "215"; repFamily "ERVL"; repLeft "43"; repStart "-223"; ### ERVLE_2q37.3f ### chr2 rmsk gene 238459195 238459878 . - . gene_id "ERVLE_2q37.3f"; transcript_id "ERVLE_2q37.3f"; locus "ERVLE_2q37.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0659"; model_cov "716"; model_pct "12.6"; chr2 rmsk exon 238459195 238459878 1728 - . gene_id "ERVLE_2q37.3f"; transcript_id "ERVLE_2q37.3f"; locus "ERVLE_2q37.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0659"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "1051"; repStart "-3900"; ### HERVW_2q37.3 ### chr2 rmsk gene 238980515 238982406 . - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0055"; model_cov "1288"; model_pct "14.9"; chr2 rmsk exon 238980515 238980715 2496 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "148"; repStart "-454"; chr2 rmsk exon 238980866 238981012 2496 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "1"; repStart "-633"; chr2 rmsk exon 238981013 238981302 2100 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr2 rmsk exon 238981293 238981331 280 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr2 rmsk exon 238981325 238982223 7187 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5101"; repStart "-2607"; chr2 rmsk exon 238982365 238982406 349 - . gene_id "HERVW_2q37.3"; transcript_id "HERVW_2q37.3"; locus "HERVW_2q37.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0055"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "4918"; repStart "-3667"; ### ERV316A3_2q37.3b ### chr2 rmsk gene 239911911 239913614 . - . gene_id "ERV316A3_2q37.3b"; transcript_id "ERV316A3_2q37.3b"; locus "ERV316A3_2q37.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0439"; model_cov "1281"; model_pct "24.5"; chr2 rmsk exon 239911911 239912185 516 - . gene_id "ERV316A3_2q37.3b"; transcript_id "ERV316A3_2q37.3b"; locus "ERV316A3_2q37.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0439"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "6"; repStart "-157"; chr2 rmsk exon 239912403 239913614 1149 - . gene_id "ERV316A3_2q37.3b"; transcript_id "ERV316A3_2q37.3b"; locus "ERV316A3_2q37.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0439"; repClass "LTR"; repEnd "4228"; repFamily "ERVL"; repLeft "2947"; repStart "-998"; ### ERVLE_2q37.3g ### chr2 rmsk gene 240141187 240142329 . - . gene_id "ERVLE_2q37.3g"; transcript_id "ERVLE_2q37.3g"; locus "ERVLE_2q37.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0660"; model_cov "874"; model_pct "15.4"; chr2 rmsk exon 240141187 240141436 398 - . gene_id "ERVLE_2q37.3g"; transcript_id "ERVLE_2q37.3g"; locus "ERVLE_2q37.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0660"; repClass "LTR"; repEnd "1557"; repFamily "ERVL"; repLeft "1281"; repStart "-4110"; chr2 rmsk exon 240141439 240141660 893 - . gene_id "ERVLE_2q37.3g"; transcript_id "ERVLE_2q37.3g"; locus "ERVLE_2q37.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0660"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "383"; repStart "-5062"; chr2 rmsk exon 240142022 240142329 608 - . gene_id "ERVLE_2q37.3g"; transcript_id "ERVLE_2q37.3g"; locus "ERVLE_2q37.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0660"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "3"; repStart "-5288"; ### MER34B_2q37.3 ### chr2 rmsk gene 240414262 240417234 . + . gene_id "MER34B_2q37.3"; transcript_id "MER34B_2q37.3"; locus "MER34B_2q37.3"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0053"; model_cov "1978"; model_pct "36.9"; chr2 rmsk exon 240414262 240414743 2199 + . gene_id "MER34B_2q37.3"; transcript_id "MER34B_2q37.3"; locus "MER34B_2q37.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0053"; repClass "LTR"; repEnd "2713"; repFamily "ERV1"; repLeft "-2643"; repStart "2276"; chr2 rmsk exon 240415051 240416238 2199 + . gene_id "MER34B_2q37.3"; transcript_id "MER34B_2q37.3"; locus "MER34B_2q37.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0053"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "-1188"; repStart "3134"; chr2 rmsk exon 240416761 240417234 849 + . gene_id "MER34B_2q37.3"; transcript_id "MER34B_2q37.3"; locus "MER34B_2q37.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0053"; repClass "LTR"; repEnd "5042"; repFamily "ERV1"; repLeft "-314"; repStart "4535"; ### ERV316A3_2q37.3c ### chr2 rmsk gene 240601329 240603738 . - . gene_id "ERV316A3_2q37.3c"; transcript_id "ERV316A3_2q37.3c"; locus "ERV316A3_2q37.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0441"; model_cov "579"; model_pct "11.1"; chr2 rmsk exon 240601329 240601464 314 - . gene_id "ERV316A3_2q37.3c"; transcript_id "ERV316A3_2q37.3c"; locus "ERV316A3_2q37.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0441"; repClass "LTR"; repEnd "2895"; repFamily "ERVL"; repLeft "2752"; repStart "-2331"; chr2 rmsk exon 240602265 240602426 313 - . gene_id "ERV316A3_2q37.3c"; transcript_id "ERV316A3_2q37.3c"; locus "ERV316A3_2q37.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0441"; repClass "LTR"; repEnd "2085"; repFamily "ERVL"; repLeft "1916"; repStart "-3141"; chr2 rmsk exon 240602928 240603082 340 - . gene_id "ERV316A3_2q37.3c"; transcript_id "ERV316A3_2q37.3c"; locus "ERV316A3_2q37.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0441"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "964"; repStart "-4100"; chr2 rmsk exon 240603640 240603738 322 - . gene_id "ERV316A3_2q37.3c"; transcript_id "ERV316A3_2q37.3c"; locus "ERV316A3_2q37.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0441"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "267"; repStart "-4854"; ### ERVLE_2q37.3h ### chr2 rmsk gene 240883623 240885761 . - . gene_id "ERVLE_2q37.3h"; transcript_id "ERVLE_2q37.3h"; locus "ERVLE_2q37.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0662"; model_cov "1610"; model_pct "28.4"; chr2 rmsk exon 240883623 240883674 542 - . gene_id "ERVLE_2q37.3h"; transcript_id "ERVLE_2q37.3h"; locus "ERVLE_2q37.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0662"; repClass "LTR"; repEnd "4072"; repFamily "ERVL"; repLeft "4024"; repStart "-1595"; chr2 rmsk exon 240884001 240884444 546 - . gene_id "ERVLE_2q37.3h"; transcript_id "ERVLE_2q37.3h"; locus "ERVLE_2q37.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0662"; repClass "LTR"; repEnd "3798"; repFamily "ERVL"; repLeft "3245"; repStart "-1869"; chr2 rmsk exon 240884582 240885317 1977 - . gene_id "ERVLE_2q37.3h"; transcript_id "ERVLE_2q37.3h"; locus "ERVLE_2q37.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0662"; repClass "LTR"; repEnd "3048"; repFamily "ERVL"; repLeft "2295"; repStart "-2619"; chr2 rmsk exon 240885518 240885761 336 - . gene_id "ERVLE_2q37.3h"; transcript_id "ERVLE_2q37.3h"; locus "ERVLE_2q37.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0662"; repClass "LTR"; repEnd "2101"; repFamily "ERVL"; repLeft "1845"; repStart "-3566"; ### HERVL40_2q37.3 ### chr2 rmsk gene 241017184 241020543 . - . gene_id "HERVL40_2q37.3"; transcript_id "HERVL40_2q37.3"; locus "HERVL40_2q37.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0057"; model_cov "2423"; model_pct "43.8"; chr2 rmsk exon 241017184 241017549 1121 - . gene_id "HERVL40_2q37.3"; transcript_id "HERVL40_2q37.3"; locus "HERVL40_2q37.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0057"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-58"; repStart "-15"; chr2 rmsk exon 241017663 241017950 2823 - . gene_id "HERVL40_2q37.3"; transcript_id "HERVL40_2q37.3"; locus "HERVL40_2q37.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0057"; repClass "LTR"; repEnd "5441"; repFamily "ERVL"; repLeft "5120"; repStart "-89"; chr2 rmsk exon 241018046 241019840 2823 - . gene_id "HERVL40_2q37.3"; transcript_id "HERVL40_2q37.3"; locus "HERVL40_2q37.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0057"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "3245"; repStart "-411"; chr2 rmsk exon 241020326 241020543 767 - . gene_id "HERVL40_2q37.3"; transcript_id "HERVL40_2q37.3"; locus "HERVL40_2q37.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0057"; repClass "LTR"; repEnd "3119"; repFamily "ERVL"; repLeft "2891"; repStart "-2411"; ### ERVLB4_2q37.3b ### chr2 rmsk gene 241574252 241575873 . + . gene_id "ERVLB4_2q37.3b"; transcript_id "ERVLB4_2q37.3b"; locus "ERVLB4_2q37.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0277"; model_cov "1136"; model_pct "19.9"; chr2 rmsk exon 241574252 241574447 861 + . gene_id "ERVLB4_2q37.3b"; transcript_id "ERVLB4_2q37.3b"; locus "ERVLB4_2q37.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0277"; repClass "LTR"; repEnd "279"; repFamily "ERVL"; repLeft "-5435"; repStart "68"; chr2 rmsk exon 241575041 241575873 3585 + . gene_id "ERVLB4_2q37.3b"; transcript_id "ERVLB4_2q37.3b"; locus "ERVLB4_2q37.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0277"; repClass "LTR"; repEnd "1269"; repFamily "ERVL"; repLeft "-4445"; repStart "344"; ### MER4_2q37.3a ### chr2 rmsk gene 241778595 241786822 . - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0126"; model_cov "5061"; model_pct "76.7"; chr2 rmsk exon 241778595 241779065 3503 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0126"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr2 rmsk exon 241779066 241779214 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6462"; repStart "-5"; chr2 rmsk exon 241779533 241779703 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "6461"; repFamily "ERV1"; repLeft "6314"; repStart "-137"; chr2 rmsk exon 241780000 241780238 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "6029"; repStart "-285"; chr2 rmsk exon 241780546 241782301 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "4191"; repStart "-570"; chr2 rmsk exon 241782626 241782855 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "4190"; repFamily "ERV1"; repLeft "3963"; repStart "-2408"; chr2 rmsk exon 241783165 241783732 13762 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "3962"; repFamily "ERV1"; repLeft "3884"; repStart "-2636"; chr2 rmsk exon 241783980 241784030 6467 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2447"; repStart "-4103"; chr2 rmsk exon 241784333 241785275 6467 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "2446"; repFamily "ERV1"; repLeft "1468"; repStart "-4152"; chr2 rmsk exon 241785572 241785997 6467 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "1467"; repFamily "ERV1"; repLeft "993"; repStart "-5131"; chr2 rmsk exon 241785996 241786046 334 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; chr2 rmsk exon 241786176 241786822 2513 - . gene_id "MER4_2q37.3a"; transcript_id "MER4_2q37.3a"; locus "MER4_2q37.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0126"; repClass "LTR"; repEnd "809"; repFamily "ERV1"; repLeft "2"; repStart "-5789"; ### MER4_2q37.3b ### chr2 rmsk gene 241786859 241793200 . + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0127"; model_cov "3947"; model_pct "59.8"; chr2 rmsk exon 241786859 241787351 2957 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0127"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "5"; chr2 rmsk exon 241787355 241787846 2118 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "-1200"; repFamily "ERV1"; repLeft "-7798"; repStart "-1671"; chr2 rmsk exon 241787825 241787891 254 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "621"; chr2 rmsk exon 241787860 241787964 407 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "-640"; repFamily "ERV1"; repLeft "-7238"; repStart "-739"; chr2 rmsk exon 241788020 241788386 1249 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "2501"; repFamily "ERV1"; repLeft "-4097"; repStart "2115"; chr2 rmsk exon 241788374 241789047 4106 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "15"; chr2 rmsk exon 241789069 241789327 1352 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "1031"; repFamily "ERV1"; repLeft "-5567"; repStart "764"; chr2 rmsk exon 241789338 241789599 1352 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-4584"; repStart "1754"; chr2 rmsk exon 241789883 241789921 1352 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "2044"; repFamily "ERV1"; repLeft "-4554"; repStart "2015"; chr2 rmsk exon 241789961 241790482 9035 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "5430"; repFamily "ERV1"; repLeft "-1168"; repStart "4893"; chr2 rmsk exon 241791235 241792001 9035 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "6188"; repFamily "ERV1"; repLeft "-410"; repStart "5431"; chr2 rmsk exon 241792326 241792742 9035 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0127"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6189"; chr2 rmsk exon 241792754 241793200 2949 + . gene_id "MER4_2q37.3b"; transcript_id "MER4_2q37.3b"; locus "MER4_2q37.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0127"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-24"; repStart "1"; ### MER4B_2q37.3 ### chr2 rmsk gene 241834547 241837304 . - . gene_id "MER4B_2q37.3"; transcript_id "MER4B_2q37.3"; locus "MER4B_2q37.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0080"; model_cov "2086"; model_pct "30.9"; chr2 rmsk exon 241834547 241835222 3845 - . gene_id "MER4B_2q37.3"; transcript_id "MER4B_2q37.3"; locus "MER4B_2q37.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0080"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "6085"; repStart "-1"; chr2 rmsk exon 241835542 241835739 3845 - . gene_id "MER4B_2q37.3"; transcript_id "MER4B_2q37.3"; locus "MER4B_2q37.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0080"; repClass "LTR"; repEnd "6084"; repFamily "ERV1"; repLeft "5832"; repStart "-674"; chr2 rmsk exon 241836335 241837015 3845 - . gene_id "MER4B_2q37.3"; transcript_id "MER4B_2q37.3"; locus "MER4B_2q37.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0080"; repClass "LTR"; repEnd "5831"; repFamily "ERV1"; repLeft "4783"; repStart "-927"; chr2 rmsk exon 241837165 241837304 526 - . gene_id "MER4B_2q37.3"; transcript_id "MER4B_2q37.3"; locus "MER4B_2q37.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0080"; repClass "LTR"; repEnd "2588"; repFamily "ERV1"; repLeft "2474"; repStart "-4170"; ### MER101_2q37.3 ### chr2 rmsk gene 241838232 241840192 . - . gene_id "MER101_2q37.3"; transcript_id "MER101_2q37.3"; locus "MER101_2q37.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0085"; model_cov "1303"; model_pct "19.6"; chr2 rmsk exon 241838232 241838994 3219 - . gene_id "MER101_2q37.3"; transcript_id "MER101_2q37.3"; locus "MER101_2q37.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0085"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "2794"; repStart "-2868"; chr2 rmsk exon 241839286 241839377 1341 - . gene_id "MER101_2q37.3"; transcript_id "MER101_2q37.3"; locus "MER101_2q37.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0085"; repClass "LTR"; repEnd "3532"; repFamily "ERV1"; repLeft "3434"; repStart "-3107"; chr2 rmsk exon 241839669 241839787 1341 - . gene_id "MER101_2q37.3"; transcript_id "MER101_2q37.3"; locus "MER101_2q37.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0085"; repClass "LTR"; repEnd "3433"; repFamily "ERV1"; repLeft "3335"; repStart "-3206"; chr2 rmsk exon 241840060 241840192 1341 - . gene_id "MER101_2q37.3"; transcript_id "MER101_2q37.3"; locus "MER101_2q37.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0085"; repClass "LTR"; repEnd "3334"; repFamily "ERV1"; repLeft "3204"; repStart "-3305"; ### HERVL_3p26.3a ### chr3 rmsk gene 440359 446863 . - . gene_id "HERVL_3p26.3a"; transcript_id "HERVL_3p26.3a"; locus "HERVL_3p26.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0231"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 440359 440755 2797 - . gene_id "HERVL_3p26.3a"; transcript_id "HERVL_3p26.3a"; locus "HERVL_3p26.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0231"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr3 rmsk exon 440756 446435 30161 - . gene_id "HERVL_3p26.3a"; transcript_id "HERVL_3p26.3a"; locus "HERVL_3p26.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0231"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 446439 446863 3245 - . gene_id "HERVL_3p26.3a"; transcript_id "HERVL_3p26.3a"; locus "HERVL_3p26.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0231"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVE_3p26.3 ### chr3 rmsk gene 846924 853933 . + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0020"; model_cov "6331"; model_pct "81.0"; chr3 rmsk exon 846924 847109 1142 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; chr3 rmsk exon 847110 847497 2269 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-7464"; repStart "-33"; chr3 rmsk exon 847547 848092 2917 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "-6814"; repStart "435"; chr3 rmsk exon 848074 853381 31157 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "6516"; repFamily "ERV1"; repLeft "-1297"; repStart "1266"; chr3 rmsk exon 853439 853574 863 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "0"; repStart "7678"; chr3 rmsk exon 853577 853746 321 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "-288"; repStart "41"; chr3 rmsk exon 853747 853933 1184 + . gene_id "HERVE_3p26.3"; transcript_id "HERVE_3p26.3"; locus "HERVE_3p26.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0020"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; ### HERVH_3p26.3a ### chr3 rmsk gene 890694 896413 . - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0219"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 890694 891105 2807 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 891106 891484 2342 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 891483 891694 1363 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 891696 892356 4406 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4490"; repStart "-2564"; chr3 rmsk exon 892361 892864 3297 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 892855 893002 897 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 892989 895999 20057 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr3 rmsk exon 896002 896413 2769 - . gene_id "HERVH_3p26.3a"; transcript_id "HERVH_3p26.3a"; locus "HERVH_3p26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0219"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_3p26.3b ### chr3 rmsk gene 983746 988656 . - . gene_id "HERVL_3p26.3b"; transcript_id "HERVL_3p26.3b"; locus "HERVL_3p26.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0232"; model_cov "4536"; model_pct "80.2"; chr3 rmsk exon 983746 983835 2868 - . gene_id "HERVL_3p26.3b"; transcript_id "HERVL_3p26.3b"; locus "HERVL_3p26.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0232"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr3 rmsk exon 983864 984256 2868 - . gene_id "HERVL_3p26.3b"; transcript_id "HERVL_3p26.3b"; locus "HERVL_3p26.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0232"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr3 rmsk exon 984257 988572 33297 - . gene_id "HERVL_3p26.3b"; transcript_id "HERVL_3p26.3b"; locus "HERVL_3p26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0232"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1305"; repStart "0"; chr3 rmsk exon 988553 988656 676 - . gene_id "HERVL_3p26.3b"; transcript_id "HERVL_3p26.3b"; locus "HERVL_3p26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0232"; repClass "LTR"; repEnd "1253"; repFamily "ERVL"; repLeft "1066"; repStart "-4401"; ### HERVH_3p26.3b ### chr3 rmsk gene 1240737 1245092 . - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0220"; model_cov "3545"; model_pct "46.0"; chr3 rmsk exon 1240737 1241237 3906 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 1241238 1241848 4585 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7106"; repStart "0"; chr3 rmsk exon 1241841 1242002 1027 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "3492"; repStart "-4061"; chr3 rmsk exon 1241993 1242142 964 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 1242122 1244569 13676 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "437"; repStart "-4718"; chr3 rmsk exon 1244550 1244620 505 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "71"; repFamily "ERV1"; repLeft "1"; repStart "-7642"; chr3 rmsk exon 1244621 1245092 4067 - . gene_id "HERVH_3p26.3b"; transcript_id "HERVH_3p26.3b"; locus "HERVH_3p26.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0220"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3p26.3 ### chr3 rmsk gene 1670094 1670796 . - . gene_id "ERV316A3_3p26.3"; transcript_id "ERV316A3_3p26.3"; locus "ERV316A3_3p26.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0442"; model_cov "541"; model_pct "10.4"; chr3 rmsk exon 1670094 1670507 961 - . gene_id "ERV316A3_3p26.3"; transcript_id "ERV316A3_3p26.3"; locus "ERV316A3_3p26.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0442"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "4684"; repStart "-129"; chr3 rmsk exon 1670666 1670796 302 - . gene_id "ERV316A3_3p26.3"; transcript_id "ERV316A3_3p26.3"; locus "ERV316A3_3p26.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0442"; repClass "LTR"; repEnd "4348"; repFamily "ERVL"; repLeft "4220"; repStart "-878"; ### HERVIP10F_3p26.3 ### chr3 rmsk gene 1888555 1892710 . + . gene_id "HERVIP10F_3p26.3"; transcript_id "HERVIP10F_3p26.3"; locus "HERVIP10F_3p26.3"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0025"; model_cov "3276"; model_pct "42.3"; chr3 rmsk exon 1888555 1888840 1650 + . gene_id "HERVIP10F_3p26.3"; transcript_id "HERVIP10F_3p26.3"; locus "HERVIP10F_3p26.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0025"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "258"; chr3 rmsk exon 1889106 1892347 12867 + . gene_id "HERVIP10F_3p26.3"; transcript_id "HERVIP10F_3p26.3"; locus "HERVIP10F_3p26.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0025"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "4461"; chr3 rmsk exon 1892423 1892710 1507 + . gene_id "HERVIP10F_3p26.3"; transcript_id "HERVIP10F_3p26.3"; locus "HERVIP10F_3p26.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0025"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "258"; ### HERVL_3p26.3c ### chr3 rmsk gene 1921268 1926923 . + . gene_id "HERVL_3p26.3c"; transcript_id "HERVL_3p26.3c"; locus "HERVL_3p26.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0233"; model_cov "5321"; model_pct "94.1"; chr3 rmsk exon 1921268 1921331 270 + . gene_id "HERVL_3p26.3c"; transcript_id "HERVL_3p26.3c"; locus "HERVL_3p26.3c"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0233"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "0"; repStart "653"; chr3 rmsk exon 1921332 1921799 39156 + . gene_id "HERVL_3p26.3c"; transcript_id "HERVL_3p26.3c"; locus "HERVL_3p26.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0233"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-5187"; repStart "1"; chr3 rmsk exon 1922104 1926923 39156 + . gene_id "HERVL_3p26.3c"; transcript_id "HERVL_3p26.3c"; locus "HERVL_3p26.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0233"; repClass "LTR"; repEnd "5323"; repFamily "ERVL"; repLeft "-331"; repStart "468"; ### ERVLB4_3p26.2a ### chr3 rmsk gene 3563493 3564556 . - . gene_id "ERVLB4_3p26.2a"; transcript_id "ERVLB4_3p26.2a"; locus "ERVLB4_3p26.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0279"; model_cov "904"; model_pct "15.8"; chr3 rmsk exon 3563493 3563733 1169 - . gene_id "ERVLB4_3p26.2a"; transcript_id "ERVLB4_3p26.2a"; locus "ERVLB4_3p26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0279"; repClass "LTR"; repEnd "934"; repFamily "ERVL"; repLeft "670"; repStart "-4780"; chr3 rmsk exon 3563931 3564556 2991 - . gene_id "ERVLB4_3p26.2a"; transcript_id "ERVLB4_3p26.2a"; locus "ERVLB4_3p26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0279"; repClass "LTR"; repEnd "641"; repFamily "ERVL"; repLeft "1"; repStart "-5073"; ### HERVL_3p26.2 ### chr3 rmsk gene 3828106 3835001 . - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0235"; model_cov "5652"; model_pct "100.0"; chr3 rmsk exon 3828106 3828132 2656 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "413"; repStart "-7"; chr3 rmsk exon 3828165 3828559 2656 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "1"; repStart "-32"; chr3 rmsk exon 3828560 3831533 40399 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2668"; repStart "0"; chr3 rmsk exon 3831852 3834492 40399 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "1"; repStart "-2987"; chr3 rmsk exon 3834493 3834525 2804 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "407"; repStart "0"; chr3 rmsk exon 3834616 3835001 2804 - . gene_id "HERVL_3p26.2"; transcript_id "HERVL_3p26.2"; locus "HERVL_3p26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0235"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "1"; repStart "-38"; ### ERVLB4_3p26.2b ### chr3 rmsk gene 3928386 3929629 . - . gene_id "ERVLB4_3p26.2b"; transcript_id "ERVLB4_3p26.2b"; locus "ERVLB4_3p26.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0280"; model_cov "653"; model_pct "11.4"; chr3 rmsk exon 3928386 3928871 2449 - . gene_id "ERVLB4_3p26.2b"; transcript_id "ERVLB4_3p26.2b"; locus "ERVLB4_3p26.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0280"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 3928872 3929537 2605 - . gene_id "ERVLB4_3p26.2b"; transcript_id "ERVLB4_3p26.2b"; locus "ERVLB4_3p26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0280"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5061"; repStart "0"; chr3 rmsk exon 3929538 3929629 553 - . gene_id "ERVLB4_3p26.2b"; transcript_id "ERVLB4_3p26.2b"; locus "ERVLB4_3p26.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0280"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "1"; repStart "-423"; ### HERVL_3p26.1a ### chr3 rmsk gene 4127291 4133860 . + . gene_id "HERVL_3p26.1a"; transcript_id "HERVL_3p26.1a"; locus "HERVL_3p26.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0236"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 4127291 4127739 3395 + . gene_id "HERVL_3p26.1a"; transcript_id "HERVL_3p26.1a"; locus "HERVL_3p26.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0236"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 4127740 4133414 41775 + . gene_id "HERVL_3p26.1a"; transcript_id "HERVL_3p26.1a"; locus "HERVL_3p26.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0236"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 4133415 4133860 3419 + . gene_id "HERVL_3p26.1a"; transcript_id "HERVL_3p26.1a"; locus "HERVL_3p26.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0236"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_3p26.1 ### chr3 rmsk gene 4470242 4472991 . - . gene_id "ERV316A3_3p26.1"; transcript_id "ERV316A3_3p26.1"; locus "ERV316A3_3p26.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0444"; model_cov "1452"; model_pct "27.8"; chr3 rmsk exon 4470242 4470865 2481 - . gene_id "ERV316A3_3p26.1"; transcript_id "ERV316A3_3p26.1"; locus "ERV316A3_3p26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0444"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "4178"; repStart "-441"; chr3 rmsk exon 4471443 4472287 2388 - . gene_id "ERV316A3_3p26.1"; transcript_id "ERV316A3_3p26.1"; locus "ERV316A3_3p26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0444"; repClass "LTR"; repEnd "852"; repFamily "ERVL"; repLeft "7"; repStart "-4374"; chr3 rmsk exon 4472290 4472348 278 - . gene_id "ERV316A3_3p26.1"; transcript_id "ERV316A3_3p26.1"; locus "ERV316A3_3p26.1"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0444"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "422"; repStart "0"; chr3 rmsk exon 4472551 4472991 1050 - . gene_id "ERV316A3_3p26.1"; transcript_id "ERV316A3_3p26.1"; locus "ERV316A3_3p26.1"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0444"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "1"; repStart "-45"; ### HERVP71A_3p26.1 ### chr3 rmsk gene 5140823 5149820 . - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0017"; model_cov "7770"; model_pct "100.0"; chr3 rmsk exon 5140823 5141283 3572 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 5141284 5143359 16435 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "5506"; repStart "0"; chr3 rmsk exon 5143349 5143517 1312 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "6494"; repFamily "ERV1"; repLeft "6326"; repStart "-1096"; chr3 rmsk exon 5143512 5147022 43066 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "5520"; repFamily "ERV1"; repLeft "1981"; repStart "-2070"; chr3 rmsk exon 5147444 5149403 43066 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "1980"; repFamily "ERV1"; repLeft "1"; repStart "-5610"; chr3 rmsk exon 5149404 5149820 2874 - . gene_id "HERVP71A_3p26.1"; transcript_id "HERVP71A_3p26.1"; locus "HERVP71A_3p26.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0017"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_3p26.1 ### chr3 rmsk gene 5691017 5699755 . - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0026"; model_cov "6512"; model_pct "84.2"; chr3 rmsk exon 5691017 5691528 2824 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr3 rmsk exon 5691578 5694652 14126 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "4607"; repStart "0"; chr3 rmsk exon 5695642 5696845 5981 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "3317"; repStart "-3216"; chr3 rmsk exon 5696825 5697618 3661 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "2404"; repStart "-4510"; chr3 rmsk exon 5697864 5698390 2334 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "1929"; repFamily "ERV1"; repLeft "1403"; repStart "-5808"; chr3 rmsk exon 5698387 5698562 589 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "1171"; repFamily "ERV1"; repLeft "980"; repStart "-6566"; chr3 rmsk exon 5698557 5699224 2492 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "1"; repStart "-7098"; chr3 rmsk exon 5699240 5699755 2858 - . gene_id "HERVIP10F_3p26.1"; transcript_id "HERVIP10F_3p26.1"; locus "HERVIP10F_3p26.1"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0026"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; ### HERVIP10FH_3p26.1a ### chr3 rmsk gene 5694627 5695645 . - . gene_id "HERVIP10FH_3p26.1a"; transcript_id "HERVIP10FH_3p26.1a"; locus "HERVIP10FH_3p26.1a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0034"; model_cov "1013"; model_pct "19.9"; chr3 rmsk exon 5694627 5695645 6119 - . gene_id "HERVIP10FH_3p26.1a"; transcript_id "HERVIP10FH_3p26.1a"; locus "HERVIP10FH_3p26.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0034"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "1284"; repStart "-2805"; ### HARLEQUIN_3p26.1 ### chr3 rmsk gene 5701383 5704206 . - . gene_id "HARLEQUIN_3p26.1"; transcript_id "HARLEQUIN_3p26.1"; locus "HARLEQUIN_3p26.1"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0040"; model_cov "3202"; model_pct "46.4"; chr3 rmsk exon 5701383 5704206 15826 - . gene_id "HARLEQUIN_3p26.1"; transcript_id "HARLEQUIN_3p26.1"; locus "HARLEQUIN_3p26.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0040"; repClass "LTR"; repEnd "6894"; repFamily "ERV1"; repLeft "3692"; repStart "-2"; ### HERVIP10FH_3p26.1b ### chr3 rmsk gene 5706470 5708978 . - . gene_id "HERVIP10FH_3p26.1b"; transcript_id "HERVIP10FH_3p26.1b"; locus "HERVIP10FH_3p26.1b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0035"; model_cov "2023"; model_pct "39.7"; chr3 rmsk exon 5706470 5708502 12789 - . gene_id "HERVIP10FH_3p26.1b"; transcript_id "HERVIP10FH_3p26.1b"; locus "HERVIP10FH_3p26.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0035"; repClass "LTR"; repEnd "2024"; repFamily "ERV1"; repLeft "1"; repStart "-3078"; chr3 rmsk exon 5708503 5708978 3073 - . gene_id "HERVIP10FH_3p26.1b"; transcript_id "HERVIP10FH_3p26.1b"; locus "HERVIP10FH_3p26.1b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0035"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3p26.1b ### chr3 rmsk gene 6008607 6016090 . + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0237"; model_cov "5658"; model_pct "100.0"; chr3 rmsk exon 6008607 6008964 2553 + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0237"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "-63"; repStart "1"; chr3 rmsk exon 6009003 6009089 2553 + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0237"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "382"; chr3 rmsk exon 6009250 6012958 29058 + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0237"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "-1923"; repStart "1"; chr3 rmsk exon 6013951 6015873 15218 + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0237"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3726"; chr3 rmsk exon 6015874 6016090 1318 + . gene_id "HERVL_3p26.1b"; transcript_id "HERVL_3p26.1b"; locus "HERVL_3p26.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0237"; repClass "LTR"; repEnd "226"; repFamily "ERVL"; repLeft "-218"; repStart "1"; ### ERVLE_3p26.1 ### chr3 rmsk gene 6395165 6396558 . - . gene_id "ERVLE_3p26.1"; transcript_id "ERVLE_3p26.1"; locus "ERVLE_3p26.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0668"; model_cov "1026"; model_pct "18.1"; chr3 rmsk exon 6395165 6395317 584 - . gene_id "ERVLE_3p26.1"; transcript_id "ERVLE_3p26.1"; locus "ERVLE_3p26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0668"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "1422"; repStart "-4091"; chr3 rmsk exon 6395542 6396224 2184 - . gene_id "ERVLE_3p26.1"; transcript_id "ERVLE_3p26.1"; locus "ERVLE_3p26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0668"; repClass "LTR"; repEnd "1143"; repFamily "ERVL"; repLeft "445"; repStart "-4524"; chr3 rmsk exon 6396392 6396558 481 - . gene_id "ERVLE_3p26.1"; transcript_id "ERVLE_3p26.1"; locus "ERVLE_3p26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0668"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "35"; repStart "-5458"; ### HERVH_3p26.1 ### chr3 rmsk gene 6397587 6403075 . + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0221"; model_cov "4997"; model_pct "64.8"; chr3 rmsk exon 6397587 6398040 3220 + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0221"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 6398043 6401082 20674 + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0221"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 6401077 6401224 911 + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0221"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 6401215 6401717 3135 + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0221"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 6401720 6403075 10578 + . gene_id "HERVH_3p26.1"; transcript_id "HERVH_3p26.1"; locus "HERVH_3p26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0221"; repClass "LTR"; repEnd "5848"; repFamily "ERV1"; repLeft "-1865"; repStart "4488"; ### ERVLB4_3p26.1 ### chr3 rmsk gene 7351460 7357102 . + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0285"; model_cov "4023"; model_pct "70.4"; chr3 rmsk exon 7351460 7352040 1756 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-42"; repStart "1"; chr3 rmsk exon 7352101 7352140 1756 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "551"; repFamily "ERVL"; repLeft "-3"; repStart "513"; chr3 rmsk exon 7352141 7352828 3047 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "762"; repFamily "ERVL"; repLeft "-4952"; repStart "64"; chr3 rmsk exon 7353080 7356297 18769 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "4018"; repFamily "ERVL"; repLeft "-1696"; repStart "768"; chr3 rmsk exon 7356603 7356689 18769 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "4094"; repFamily "ERVL"; repLeft "-1620"; repStart "4019"; chr3 rmsk exon 7356705 7356920 695 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-117"; repStart "235"; chr3 rmsk exon 7356965 7357102 606 + . gene_id "ERVLB4_3p26.1"; transcript_id "ERVLB4_3p26.1"; locus "ERVLB4_3p26.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0285"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "438"; ### MER61_3p26.1 ### chr3 rmsk gene 8015460 8021328 . - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0074"; model_cov "5249"; model_pct "100.0"; chr3 rmsk exon 8015460 8015801 2111 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0074"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 8015802 8017531 19105 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0074"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3456"; repStart "0"; chr3 rmsk exon 8017833 8020141 19105 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0074"; repClass "LTR"; repEnd "4406"; repFamily "ERV1"; repLeft "1497"; repStart "-811"; chr3 rmsk exon 8020144 8020186 268 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0074"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chr3 rmsk exon 8020180 8020663 2187 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0074"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "240"; repStart "-4440"; chr3 rmsk exon 8020988 8021328 1791 - . gene_id "MER61_3p26.1"; transcript_id "MER61_3p26.1"; locus "MER61_3p26.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0074"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3p25.3 ### chr3 rmsk gene 8177031 8182716 . + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0222"; model_cov "4908"; model_pct "63.6"; chr3 rmsk exon 8177031 8177441 2904 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 8177444 8180413 20629 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 8180408 8180555 915 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 8180546 8181048 3491 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 8181051 8181712 4464 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 8181714 8181930 1432 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 8181929 8182305 2422 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 8182306 8182716 2967 + . gene_id "HERVH_3p25.3"; transcript_id "HERVH_3p25.3"; locus "HERVH_3p25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0222"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVE_3p25.3a ### chr3 rmsk gene 8673356 8676083 . + . gene_id "HERVE_3p25.3a"; transcript_id "HERVE_3p25.3a"; locus "HERVE_3p25.3a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0022"; model_cov "2738"; model_pct "35.0"; chr3 rmsk exon 8673356 8676083 19328 + . gene_id "HERVE_3p25.3a"; transcript_id "HERVE_3p25.3a"; locus "HERVE_3p25.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0022"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "-3967"; repStart "1108"; ### HERVE_3p25.3b ### chr3 rmsk gene 8679702 8683824 . + . gene_id "HERVE_3p25.3b"; transcript_id "HERVE_3p25.3b"; locus "HERVE_3p25.3b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0024"; model_cov "2519"; model_pct "32.2"; chr3 rmsk exon 8679702 8680302 4407 + . gene_id "HERVE_3p25.3b"; transcript_id "HERVE_3p25.3b"; locus "HERVE_3p25.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0024"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "-3967"; repStart "3249"; chr3 rmsk exon 8681888 8683470 12129 + . gene_id "HERVE_3p25.3b"; transcript_id "HERVE_3p25.3b"; locus "HERVE_3p25.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0024"; repClass "LTR"; repEnd "4878"; repFamily "ERV1"; repLeft "-2935"; repStart "3249"; chr3 rmsk exon 8683541 8683824 12129 + . gene_id "HERVE_3p25.3b"; transcript_id "HERVE_3p25.3b"; locus "HERVE_3p25.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0024"; repClass "LTR"; repEnd "5172"; repFamily "ERV1"; repLeft "-2641"; repStart "4879"; ### ERVLB4_3p25.3 ### chr3 rmsk gene 8856391 8861358 . + . gene_id "ERVLB4_3p25.3"; transcript_id "ERVLB4_3p25.3"; locus "ERVLB4_3p25.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0288"; model_cov "4131"; model_pct "72.3"; chr3 rmsk exon 8856391 8858836 26260 + . gene_id "ERVLB4_3p25.3"; transcript_id "ERVLB4_3p25.3"; locus "ERVLB4_3p25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0288"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "-1646"; repStart "1582"; chr3 rmsk exon 8859143 8860798 26260 + . gene_id "ERVLB4_3p25.3"; transcript_id "ERVLB4_3p25.3"; locus "ERVLB4_3p25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0288"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4069"; chr3 rmsk exon 8860805 8861219 2314 + . gene_id "ERVLB4_3p25.3"; transcript_id "ERVLB4_3p25.3"; locus "ERVLB4_3p25.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0288"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-61"; repStart "7"; chr3 rmsk exon 8861301 8861358 2314 + . gene_id "ERVLB4_3p25.3"; transcript_id "ERVLB4_3p25.3"; locus "ERVLB4_3p25.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0288"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "460"; ### PABLB_3p25.3a ### chr3 rmsk gene 9577233 9579350 . - . gene_id "PABLB_3p25.3a"; transcript_id "PABLB_3p25.3a"; locus "PABLB_3p25.3a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0015"; model_cov "725"; model_pct "10.2"; chr3 rmsk exon 9577233 9577410 466 - . gene_id "PABLB_3p25.3a"; transcript_id "PABLB_3p25.3a"; locus "PABLB_3p25.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0015"; repClass "LTR"; repEnd "6511"; repFamily "ERV1"; repLeft "6354"; repStart "-611"; chr3 rmsk exon 9577711 9577921 466 - . gene_id "PABLB_3p25.3a"; transcript_id "PABLB_3p25.3a"; locus "PABLB_3p25.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0015"; repClass "LTR"; repEnd "6353"; repFamily "ERV1"; repLeft "6171"; repStart "-769"; chr3 rmsk exon 9578217 9578584 447 - . gene_id "PABLB_3p25.3a"; transcript_id "PABLB_3p25.3a"; locus "PABLB_3p25.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0015"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "4674"; repStart "-2093"; chr3 rmsk exon 9579316 9579350 1626 - . gene_id "PABLB_3p25.3a"; transcript_id "PABLB_3p25.3a"; locus "PABLB_3p25.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0015"; repClass "LTR"; repEnd "4309"; repFamily "ERV1"; repLeft "4278"; repStart "-2813"; ### PABLB_3p25.3b ### chr3 rmsk gene 9579644 9581905 . - . gene_id "PABLB_3p25.3b"; transcript_id "PABLB_3p25.3b"; locus "PABLB_3p25.3b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0016"; model_cov "2184"; model_pct "30.7"; chr3 rmsk exon 9579644 9581055 1626 - . gene_id "PABLB_3p25.3b"; transcript_id "PABLB_3p25.3b"; locus "PABLB_3p25.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0016"; repClass "LTR"; repEnd "5330"; repFamily "ERV1"; repLeft "3784"; repStart "-1792"; chr3 rmsk exon 9581265 9581905 793 - . gene_id "PABLB_3p25.3b"; transcript_id "PABLB_3p25.3b"; locus "PABLB_3p25.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0016"; repClass "LTR"; repEnd "1554"; repFamily "ERV1"; repLeft "916"; repStart "-5568"; ### HUERSP1_3p25.3a ### chr3 rmsk gene 9582098 9583438 . - . gene_id "HUERSP1_3p25.3a"; transcript_id "HUERSP1_3p25.3a"; locus "HUERSP1_3p25.3a"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0040"; model_cov "911"; model_pct "14.5"; chr3 rmsk exon 9582098 9582265 415 - . gene_id "HUERSP1_3p25.3a"; transcript_id "HUERSP1_3p25.3a"; locus "HUERSP1_3p25.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0040"; repClass "LTR"; repEnd "2394"; repFamily "ERV1"; repLeft "2245"; repStart "-3869"; chr3 rmsk exon 9582234 9582845 1721 - . gene_id "HUERSP1_3p25.3a"; transcript_id "HUERSP1_3p25.3a"; locus "HUERSP1_3p25.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0040"; repClass "LTR"; repEnd "1075"; repFamily "ERV1"; repLeft "471"; repStart "-5188"; chr3 rmsk exon 9583285 9583438 310 - . gene_id "HUERSP1_3p25.3a"; transcript_id "HUERSP1_3p25.3a"; locus "HUERSP1_3p25.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0040"; repClass "LTR"; repEnd "183"; repFamily "ERV1"; repLeft "25"; repStart "-6080"; ### HUERSP1_3p25.3b ### chr3 rmsk gene 9630374 9635204 . - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0041"; model_cov "2155"; model_pct "34.4"; chr3 rmsk exon 9630374 9631101 4678 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 9631102 9631738 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5624"; repStart "0"; chr3 rmsk exon 9632033 9632059 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "5623"; repFamily "ERV1"; repLeft "5615"; repStart "-640"; chr3 rmsk exon 9632381 9632683 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "5614"; repFamily "ERV1"; repLeft "5320"; repStart "-649"; chr3 rmsk exon 9632978 9633255 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "5319"; repFamily "ERV1"; repLeft "4953"; repStart "-944"; chr3 rmsk exon 9633578 9633594 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "4952"; repFamily "ERV1"; repLeft "4926"; repStart "-1311"; chr3 rmsk exon 9634050 9634165 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "4925"; repFamily "ERV1"; repLeft "4784"; repStart "-1338"; chr3 rmsk exon 9634441 9634855 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "4776"; repFamily "ERV1"; repLeft "4219"; repStart "-1487"; chr3 rmsk exon 9635166 9635204 15550 - . gene_id "HUERSP1_3p25.3b"; transcript_id "HUERSP1_3p25.3b"; locus "HUERSP1_3p25.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0041"; repClass "LTR"; repEnd "3256"; repFamily "ERV1"; repLeft "3132"; repStart "-3007"; ### HUERSP1_3p25.3c ### chr3 rmsk gene 9635796 9643306 . - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0043"; model_cov "4524"; model_pct "72.2"; chr3 rmsk exon 9635796 9635887 15550 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "4001"; repFamily "ERV1"; repLeft "3921"; repStart "-2262"; chr3 rmsk exon 9636196 9636875 15550 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "3920"; repFamily "ERV1"; repLeft "3223"; repStart "-2343"; chr3 rmsk exon 9637517 9637716 15550 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "3222"; repFamily "ERV1"; repLeft "3036"; repStart "-3041"; chr3 rmsk exon 9638025 9639498 15550 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "2293"; repFamily "ERV1"; repLeft "363"; repStart "-3970"; chr3 rmsk exon 9639769 9639918 11081 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "1636"; repFamily "ERV1"; repLeft "1535"; repStart "-4627"; chr3 rmsk exon 9640221 9640523 11081 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "1534"; repFamily "ERV1"; repLeft "1223"; repStart "-4729"; chr3 rmsk exon 9640561 9641559 11081 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "1222"; repFamily "ERV1"; repLeft "175"; repStart "-5041"; chr3 rmsk exon 9641864 9642038 11081 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "174"; repFamily "ERV1"; repLeft "2"; repStart "-6089"; chr3 rmsk exon 9642039 9642104 3981 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "627"; repStart "0"; chr3 rmsk exon 9642688 9643306 3981 - . gene_id "HUERSP1_3p25.3c"; transcript_id "HUERSP1_3p25.3c"; locus "HUERSP1_3p25.3c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0043"; repClass "LTR"; repEnd "626"; repFamily "ERV1"; repLeft "60"; repStart "-65"; ### HML2_3p25.3 ### chr3 rmsk gene 9847662 9854552 . - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0020"; model_cov "4918"; model_pct "65.3"; chr3 rmsk exon 9847662 9848644 7459 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 9848734 9850354 13139 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5826"; repStart "-89"; chr3 rmsk exon 9850354 9850938 4633 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002"; chr3 rmsk exon 9850917 9853634 21518 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1"; repStart "-4820"; chr3 rmsk exon 9853635 9854552 6737 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_3p25.3 ### chr3 rmsk gene 11247258 11255176 . - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0027"; model_cov "6541"; model_pct "84.5"; chr3 rmsk exon 11247258 11247707 1799 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 11247708 11249114 10481 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "6337"; repStart "0"; chr3 rmsk exon 11249425 11250034 10481 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "6336"; repFamily "ERV1"; repLeft "5713"; repStart "-1401"; chr3 rmsk exon 11250359 11250783 10481 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "5712"; repFamily "ERV1"; repLeft "5269"; repStart "-2025"; chr3 rmsk exon 11250785 11250857 288 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "5194"; repFamily "ERV1"; repLeft "5076"; repStart "-2543"; chr3 rmsk exon 11250833 11252644 6554 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "4854"; repFamily "ERV1"; repLeft "2948"; repStart "-2883"; chr3 rmsk exon 11252629 11253413 3963 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "2978"; repFamily "ERV1"; repLeft "2197"; repStart "-4759"; chr3 rmsk exon 11253410 11253930 2564 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "1945"; repFamily "ERV1"; repLeft "1424"; repStart "-5792"; chr3 rmsk exon 11253966 11254723 3365 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "884"; repFamily "ERV1"; repLeft "135"; repStart "-6853"; chr3 rmsk exon 11254725 11255176 1826 - . gene_id "HERVIP10F_3p25.3"; transcript_id "HERVIP10F_3p25.3"; locus "HERVIP10F_3p25.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0027"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3p25.2a ### chr3 rmsk gene 11812373 11813017 . + . gene_id "ERV316A3_3p25.2a"; transcript_id "ERV316A3_3p25.2a"; locus "ERV316A3_3p25.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0445"; model_cov "727"; model_pct "13.9"; chr3 rmsk exon 11812373 11812755 1058 + . gene_id "ERV316A3_3p25.2a"; transcript_id "ERV316A3_3p25.2a"; locus "ERV316A3_3p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0445"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-685"; repStart "4032"; chr3 rmsk exon 11812810 11813017 629 + . gene_id "ERV316A3_3p25.2a"; transcript_id "ERV316A3_3p25.2a"; locus "ERV316A3_3p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0445"; repClass "LTR"; repEnd "5149"; repFamily "ERVL"; repLeft "-77"; repStart "4931"; ### ERV316A3_3p25.2b ### chr3 rmsk gene 11928190 11929225 . - . gene_id "ERV316A3_3p25.2b"; transcript_id "ERV316A3_3p25.2b"; locus "ERV316A3_3p25.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0446"; model_cov "724"; model_pct "13.9"; chr3 rmsk exon 11928190 11928766 2121 - . gene_id "ERV316A3_3p25.2b"; transcript_id "ERV316A3_3p25.2b"; locus "ERV316A3_3p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0446"; repClass "LTR"; repEnd "1913"; repFamily "ERVL"; repLeft "1340"; repStart "-3313"; chr3 rmsk exon 11929061 11929225 2121 - . gene_id "ERV316A3_3p25.2b"; transcript_id "ERV316A3_3p25.2b"; locus "ERV316A3_3p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0446"; repClass "LTR"; repEnd "1339"; repFamily "ERVL"; repLeft "1188"; repStart "-3887"; ### ERV316A3_3p25.2c ### chr3 rmsk gene 11929498 11931058 . - . gene_id "ERV316A3_3p25.2c"; transcript_id "ERV316A3_3p25.2c"; locus "ERV316A3_3p25.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0447"; model_cov "847"; model_pct "16.2"; chr3 rmsk exon 11929498 11929938 1611 - . gene_id "ERV316A3_3p25.2c"; transcript_id "ERV316A3_3p25.2c"; locus "ERV316A3_3p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0447"; repClass "LTR"; repEnd "1397"; repFamily "ERVL"; repLeft "922"; repStart "-3829"; chr3 rmsk exon 11930244 11930317 1611 - . gene_id "ERV316A3_3p25.2c"; transcript_id "ERV316A3_3p25.2c"; locus "ERV316A3_3p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0447"; repClass "LTR"; repEnd "921"; repFamily "ERVL"; repLeft "853"; repStart "-4305"; chr3 rmsk exon 11930344 11930624 663 - . gene_id "ERV316A3_3p25.2c"; transcript_id "ERV316A3_3p25.2c"; locus "ERV316A3_3p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0447"; repClass "LTR"; repEnd "801"; repFamily "ERVL"; repLeft "508"; repStart "-4425"; chr3 rmsk exon 11931042 11931058 663 - . gene_id "ERV316A3_3p25.2c"; transcript_id "ERV316A3_3p25.2c"; locus "ERV316A3_3p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0447"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "496"; repStart "-4719"; ### ERV316A3_3p25.2d ### chr3 rmsk gene 12706372 12713168 . - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0448"; model_cov "2866"; model_pct "54.8"; chr3 rmsk exon 12706372 12706736 1128 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr3 rmsk exon 12707249 12707875 1873 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "5147"; repFamily "ERVL"; repLeft "4487"; repStart "-79"; chr3 rmsk exon 12709305 12710888 5004 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "4377"; repFamily "ERVL"; repLeft "2813"; repStart "-849"; chr3 rmsk exon 12711198 12711229 5004 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2788"; repStart "-2414"; chr3 rmsk exon 12711556 12711730 5004 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "2623"; repStart "-2439"; chr3 rmsk exon 12712333 12712683 5004 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "2622"; repFamily "ERVL"; repLeft "2290"; repStart "-2604"; chr3 rmsk exon 12713042 12713168 5004 - . gene_id "ERV316A3_3p25.2d"; transcript_id "ERV316A3_3p25.2d"; locus "ERV316A3_3p25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0448"; repClass "LTR"; repEnd "2289"; repFamily "ERVL"; repLeft "2167"; repStart "-2937"; ### HUERSP1_3p25.1 ### chr3 rmsk gene 13431986 13434085 . + . gene_id "HUERSP1_3p25.1"; transcript_id "HUERSP1_3p25.1"; locus "HUERSP1_3p25.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0044"; model_cov "1080"; model_pct "17.2"; chr3 rmsk exon 13431986 13432641 8261 + . gene_id "HUERSP1_3p25.1"; transcript_id "HUERSP1_3p25.1"; locus "HUERSP1_3p25.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0044"; repClass "LTR"; repEnd "5836"; repFamily "ERV1"; repLeft "-427"; repStart "5182"; chr3 rmsk exon 13432964 13433412 8261 + . gene_id "HUERSP1_3p25.1"; transcript_id "HUERSP1_3p25.1"; locus "HUERSP1_3p25.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0044"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5837"; chr3 rmsk exon 13433413 13434085 4965 + . gene_id "HUERSP1_3p25.1"; transcript_id "HUERSP1_3p25.1"; locus "HUERSP1_3p25.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0044"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3p25.1 ### chr3 rmsk gene 13774931 13777799 . + . gene_id "ERVLE_3p25.1"; transcript_id "ERVLE_3p25.1"; locus "ERVLE_3p25.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0672"; model_cov "2992"; model_pct "52.8"; chr3 rmsk exon 13774931 13777169 9141 + . gene_id "ERVLE_3p25.1"; transcript_id "ERVLE_3p25.1"; locus "ERVLE_3p25.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0672"; repClass "LTR"; repEnd "4946"; repFamily "ERVL"; repLeft "-721"; repStart "2629"; chr3 rmsk exon 13777194 13777799 1286 + . gene_id "ERVLE_3p25.1"; transcript_id "ERVLE_3p25.1"; locus "ERVLE_3p25.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0672"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-3"; repStart "4989"; ### PRIMA41_3p25.1a ### chr3 rmsk gene 13938873 13941866 . - . gene_id "PRIMA41_3p25.1a"; transcript_id "PRIMA41_3p25.1a"; locus "PRIMA41_3p25.1a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0025"; model_cov "2049"; model_pct "26.4"; chr3 rmsk exon 13938873 13939073 3412 - . gene_id "PRIMA41_3p25.1a"; transcript_id "PRIMA41_3p25.1a"; locus "PRIMA41_3p25.1a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0025"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "320"; repStart "0"; chr3 rmsk exon 13939105 13939500 3412 - . gene_id "PRIMA41_3p25.1a"; transcript_id "PRIMA41_3p25.1a"; locus "PRIMA41_3p25.1a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0025"; repClass "LTR"; repEnd "319"; repFamily "ERV1"; repLeft "1"; repStart "-202"; chr3 rmsk exon 13939501 13939969 13327 - . gene_id "PRIMA41_3p25.1a"; transcript_id "PRIMA41_3p25.1a"; locus "PRIMA41_3p25.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0025"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr3 rmsk exon 13940270 13941866 13327 - . gene_id "PRIMA41_3p25.1a"; transcript_id "PRIMA41_3p25.1a"; locus "PRIMA41_3p25.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0025"; repClass "LTR"; repEnd "7320"; repFamily "ERV1"; repLeft "5706"; repStart "-436"; ### PRIMA41_3p25.1b ### chr3 rmsk gene 13948636 13953990 . - . gene_id "PRIMA41_3p25.1b"; transcript_id "PRIMA41_3p25.1b"; locus "PRIMA41_3p25.1b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0026"; model_cov "4761"; model_pct "61.4"; chr3 rmsk exon 13948636 13952946 27201 - . gene_id "PRIMA41_3p25.1b"; transcript_id "PRIMA41_3p25.1b"; locus "PRIMA41_3p25.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0026"; repClass "LTR"; repEnd "5720"; repFamily "ERV1"; repLeft "1363"; repStart "-2036"; chr3 rmsk exon 13952939 13953268 2398 - . gene_id "PRIMA41_3p25.1b"; transcript_id "PRIMA41_3p25.1b"; locus "PRIMA41_3p25.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0026"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "614"; repStart "-6826"; chr3 rmsk exon 13953564 13953651 2398 - . gene_id "PRIMA41_3p25.1b"; transcript_id "PRIMA41_3p25.1b"; locus "PRIMA41_3p25.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0026"; repClass "LTR"; repEnd "613"; repFamily "ERV1"; repLeft "525"; repStart "-7143"; chr3 rmsk exon 13953672 13953990 3599 - . gene_id "PRIMA41_3p25.1b"; transcript_id "PRIMA41_3p25.1b"; locus "PRIMA41_3p25.1b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0026"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "242"; repStart "0"; ### HERVIP10F_3p25.1a ### chr3 rmsk gene 13963013 13967501 . - . gene_id "HERVIP10F_3p25.1a"; transcript_id "HERVIP10F_3p25.1a"; locus "HERVIP10F_3p25.1a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0028"; model_cov "5943"; model_pct "76.8"; chr3 rmsk exon 13963013 13963535 2922 - . gene_id "HERVIP10F_3p25.1a"; transcript_id "HERVIP10F_3p25.1a"; locus "HERVIP10F_3p25.1a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0028"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr3 rmsk exon 13963541 13967501 21215 - . gene_id "HERVIP10F_3p25.1a"; transcript_id "HERVIP10F_3p25.1a"; locus "HERVIP10F_3p25.1a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0028"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "1790"; repStart "-4"; ### MER4_3p25.1a ### chr3 rmsk gene 14024314 14031890 . - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0130"; model_cov "5327"; model_pct "80.7"; chr3 rmsk exon 14024314 14024769 3175 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0130"; repClass "LTR"; repEnd "455"; repFamily "ERV1"; repLeft "1"; repStart "-17"; chr3 rmsk exon 14024781 14027433 15634 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0130"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "3837"; repStart "-5"; chr3 rmsk exon 14027435 14028320 3729 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0130"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "2731"; repStart "-2919"; chr3 rmsk exon 14030290 14030980 4087 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0130"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1764"; repStart "-4103"; chr3 rmsk exon 14030997 14031226 1399 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0130"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "764"; repStart "-5590"; chr3 rmsk exon 14031248 14031890 3902 - . gene_id "MER4_3p25.1a"; transcript_id "MER4_3p25.1a"; locus "MER4_3p25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0130"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "39"; repStart "-5911"; ### MER4_3p25.1b ### chr3 rmsk gene 14031956 14033419 . - . gene_id "MER4_3p25.1b"; transcript_id "MER4_3p25.1b"; locus "MER4_3p25.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0131"; model_cov "973"; model_pct "14.7"; chr3 rmsk exon 14031956 14032246 1211 - . gene_id "MER4_3p25.1b"; transcript_id "MER4_3p25.1b"; locus "MER4_3p25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0131"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2128"; repStart "-4170"; chr3 rmsk exon 14032371 14032944 2260 - . gene_id "MER4_3p25.1b"; transcript_id "MER4_3p25.1b"; locus "MER4_3p25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0131"; repClass "LTR"; repEnd "674"; repFamily "ERV1"; repLeft "1"; repStart "-5924"; chr3 rmsk exon 14032948 14033419 3415 - . gene_id "MER4_3p25.1b"; transcript_id "MER4_3p25.1b"; locus "MER4_3p25.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0131"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML6_3p25.1 ### chr3 rmsk gene 14225058 14230262 . + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0010"; model_cov "4326"; model_pct "60.1"; chr3 rmsk exon 14225058 14225513 3354 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "468"; repFamily "ERVK"; repLeft "-16"; repStart "1"; chr3 rmsk exon 14225514 14226223 4543 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "733"; repFamily "ERVK"; repLeft "-6469"; repStart "8"; chr3 rmsk exon 14226230 14227609 9101 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "2704"; repFamily "ERVK"; repLeft "-4498"; repStart "1317"; chr3 rmsk exon 14227598 14228163 3592 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "-2936"; repStart "3704"; chr3 rmsk exon 14228163 14228822 4020 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1885"; repStart "4644"; chr3 rmsk exon 14228818 14229798 7048 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "6223"; chr3 rmsk exon 14229799 14230262 3616 + . gene_id "HML6_3p25.1"; transcript_id "HML6_3p25.1"; locus "HML6_3p25.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0010"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVL_3p25.1 ### chr3 rmsk gene 14238679 14239284 . + . gene_id "ERVL_3p25.1"; transcript_id "ERVL_3p25.1"; locus "ERVL_3p25.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0071"; model_cov "663"; model_pct "11.5"; chr3 rmsk exon 14238679 14239284 3068 + . gene_id "ERVL_3p25.1"; transcript_id "ERVL_3p25.1"; locus "ERVL_3p25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0071"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "5093"; ### HERVIP10F_3p25.1b ### chr3 rmsk gene 16015486 16024234 . - . gene_id "HERVIP10F_3p25.1b"; transcript_id "HERVIP10F_3p25.1b"; locus "HERVIP10F_3p25.1b"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0029"; model_cov "7732"; model_pct "99.9"; chr3 rmsk exon 16015486 16016043 3859 - . gene_id "HERVIP10F_3p25.1b"; transcript_id "HERVIP10F_3p25.1b"; locus "HERVIP10F_3p25.1b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0029"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 16016044 16023742 64176 - . gene_id "HERVIP10F_3p25.1b"; transcript_id "HERVIP10F_3p25.1b"; locus "HERVIP10F_3p25.1b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0029"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr3 rmsk exon 16023743 16024234 3682 - . gene_id "HERVIP10F_3p25.1b"; transcript_id "HERVIP10F_3p25.1b"; locus "HERVIP10F_3p25.1b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0029"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "1"; repStart "-11"; ### ERV316A3_3p25.1 ### chr3 rmsk gene 16029909 16032360 . + . gene_id "ERV316A3_3p25.1"; transcript_id "ERV316A3_3p25.1"; locus "ERV316A3_3p25.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0450"; model_cov "2026"; model_pct "38.8"; chr3 rmsk exon 16029909 16031883 7089 + . gene_id "ERV316A3_3p25.1"; transcript_id "ERV316A3_3p25.1"; locus "ERV316A3_3p25.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0450"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "3195"; chr3 rmsk exon 16031889 16032360 1697 + . gene_id "ERV316A3_3p25.1"; transcript_id "ERV316A3_3p25.1"; locus "ERV316A3_3p25.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0450"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_3p24.3a ### chr3 rmsk gene 16474761 16475780 . + . gene_id "ERVLE_3p24.3a"; transcript_id "ERVLE_3p24.3a"; locus "ERVLE_3p24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0676"; model_cov "637"; model_pct "11.2"; chr3 rmsk exon 16474761 16474914 1863 + . gene_id "ERVLE_3p24.3a"; transcript_id "ERVLE_3p24.3a"; locus "ERVLE_3p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0676"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "-931"; repStart "4556"; chr3 rmsk exon 16475315 16475780 1863 + . gene_id "ERVLE_3p24.3a"; transcript_id "ERVLE_3p24.3a"; locus "ERVLE_3p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0676"; repClass "LTR"; repEnd "5194"; repFamily "ERVL"; repLeft "-473"; repStart "4737"; ### MER4_3p24.3a ### chr3 rmsk gene 16670632 16676612 . + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0132"; model_cov "5749"; model_pct "87.1"; chr3 rmsk exon 16670632 16671084 3413 + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0132"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 16671088 16672382 11941 + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0132"; repClass "LTR"; repEnd "1489"; repFamily "ERV1"; repLeft "-5109"; repStart "1"; chr3 rmsk exon 16672484 16673475 11941 + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0132"; repClass "LTR"; repEnd "2630"; repFamily "ERV1"; repLeft "-3968"; repStart "1490"; chr3 rmsk exon 16673715 16674624 11941 + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0132"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2631"; chr3 rmsk exon 16674624 16676612 12916 + . gene_id "MER4_3p24.3a"; transcript_id "MER4_3p24.3a"; locus "MER4_3p24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0132"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-690"; repStart "3837"; ### MER4_3p24.3b ### chr3 rmsk gene 16682755 16683892 . + . gene_id "MER4_3p24.3b"; transcript_id "MER4_3p24.3b"; locus "MER4_3p24.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0133"; model_cov "704"; model_pct "10.7"; chr3 rmsk exon 16682755 16683436 4354 + . gene_id "MER4_3p24.3b"; transcript_id "MER4_3p24.3b"; locus "MER4_3p24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0133"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5892"; chr3 rmsk exon 16683445 16683892 3164 + . gene_id "MER4_3p24.3b"; transcript_id "MER4_3p24.3b"; locus "MER4_3p24.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0133"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### HERVH_3p24.3a ### chr3 rmsk gene 16744186 16750064 . + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0223"; model_cov "4906"; model_pct "63.6"; chr3 rmsk exon 16744186 16744680 3267 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 16744680 16747716 19205 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 16747711 16747858 841 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 16747849 16748351 3112 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 16748354 16749016 4161 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 16749018 16749234 1328 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 16749235 16749615 2372 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 16749619 16750064 3557 + . gene_id "HERVH_3p24.3a"; transcript_id "HERVH_3p24.3a"; locus "HERVH_3p24.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0223"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### PABLB_3p24.3 ### chr3 rmsk gene 16763827 16772528 . + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0017"; model_cov "7034"; model_pct "98.8"; chr3 rmsk exon 16763827 16764033 515 + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0017"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "-474"; repStart "1"; chr3 rmsk exon 16764345 16764680 1082 + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0017"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "194"; chr3 rmsk exon 16764694 16766027 34431 + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0017"; repClass "LTR"; repEnd "1445"; repFamily "ERV1"; repLeft "-5677"; repStart "23"; chr3 rmsk exon 16766324 16771898 34431 + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0017"; repClass "LTR"; repEnd "7058"; repFamily "ERV1"; repLeft "-64"; repStart "1446"; chr3 rmsk exon 16772002 16772528 1116 + . gene_id "PABLB_3p24.3"; transcript_id "PABLB_3p24.3"; locus "PABLB_3p24.3"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0017"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_3p24.3a ### chr3 rmsk gene 17590046 17595278 . + . gene_id "HERVL_3p24.3a"; transcript_id "HERVL_3p24.3a"; locus "HERVL_3p24.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0238"; model_cov "4462"; model_pct "78.9"; chr3 rmsk exon 17590046 17590957 21658 + . gene_id "HERVL_3p24.3a"; transcript_id "HERVL_3p24.3a"; locus "HERVL_3p24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0238"; repClass "LTR"; repEnd "1729"; repFamily "ERVL"; repLeft "-3925"; repStart "824"; chr3 rmsk exon 17591266 17593200 21658 + . gene_id "HERVL_3p24.3a"; transcript_id "HERVL_3p24.3a"; locus "HERVL_3p24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0238"; repClass "LTR"; repEnd "3638"; repFamily "ERVL"; repLeft "-2016"; repStart "1730"; chr3 rmsk exon 17593199 17594845 12801 + . gene_id "HERVL_3p24.3a"; transcript_id "HERVL_3p24.3a"; locus "HERVL_3p24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0238"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "4004"; chr3 rmsk exon 17594847 17595278 3382 + . gene_id "HERVL_3p24.3a"; transcript_id "HERVL_3p24.3a"; locus "HERVL_3p24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0238"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-11"; repStart "1"; ### HERV9_3p24.3 ### chr3 rmsk gene 17774262 17782406 . + . gene_id "HERV9_3p24.3"; transcript_id "HERV9_3p24.3"; locus "HERV9_3p24.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0030"; model_cov "5650"; model_pct "67.0"; chr3 rmsk exon 17774262 17774941 4720 + . gene_id "HERV9_3p24.3"; transcript_id "HERV9_3p24.3"; locus "HERV9_3p24.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0030"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr3 rmsk exon 17774942 17780880 28077 + . gene_id "HERV9_3p24.3"; transcript_id "HERV9_3p24.3"; locus "HERV9_3p24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0030"; repClass "LTR"; repEnd "4879"; repFamily "ERV1"; repLeft "-3557"; repStart "1"; chr3 rmsk exon 17780879 17781651 6085 + . gene_id "HERV9_3p24.3"; transcript_id "HERV9_3p24.3"; locus "HERV9_3p24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0030"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7664"; chr3 rmsk exon 17781652 17782406 5646 + . gene_id "HERV9_3p24.3"; transcript_id "HERV9_3p24.3"; locus "HERV9_3p24.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0030"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_3p24.3b ### chr3 rmsk gene 18520245 18522067 . + . gene_id "HERVL_3p24.3b"; transcript_id "HERVL_3p24.3b"; locus "HERVL_3p24.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0239"; model_cov "1380"; model_pct "24.4"; chr3 rmsk exon 18520245 18521643 10167 + . gene_id "HERVL_3p24.3b"; transcript_id "HERVL_3p24.3b"; locus "HERVL_3p24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0239"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4274"; chr3 rmsk exon 18521644 18522067 3002 + . gene_id "HERVL_3p24.3b"; transcript_id "HERVL_3p24.3b"; locus "HERVL_3p24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0239"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_3p24.3c ### chr3 rmsk gene 18941802 18946177 . + . gene_id "HERVL_3p24.3c"; transcript_id "HERVL_3p24.3c"; locus "HERVL_3p24.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0240"; model_cov "3898"; model_pct "68.9"; chr3 rmsk exon 18941802 18942254 2917 + . gene_id "HERVL_3p24.3c"; transcript_id "HERVL_3p24.3c"; locus "HERVL_3p24.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0240"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-16"; repStart "-110"; chr3 rmsk exon 18942313 18946177 26280 + . gene_id "HERVL_3p24.3c"; transcript_id "HERVL_3p24.3c"; locus "HERVL_3p24.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0240"; repClass "LTR"; repEnd "3899"; repFamily "ERVL"; repLeft "-1755"; repStart "1"; ### ERVLE_3p24.3b ### chr3 rmsk gene 19023626 19025140 . - . gene_id "ERVLE_3p24.3b"; transcript_id "ERVLE_3p24.3b"; locus "ERVLE_3p24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0678"; model_cov "1303"; model_pct "23.0"; chr3 rmsk exon 19023626 19024345 1190 - . gene_id "ERVLE_3p24.3b"; transcript_id "ERVLE_3p24.3b"; locus "ERVLE_3p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0678"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "4497"; repStart "-445"; chr3 rmsk exon 19024416 19024720 704 - . gene_id "ERVLE_3p24.3b"; transcript_id "ERVLE_3p24.3b"; locus "ERVLE_3p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0678"; repClass "LTR"; repEnd "4358"; repFamily "ERVL"; repLeft "4053"; repStart "-1309"; chr3 rmsk exon 19024859 19025140 376 - . gene_id "ERVLE_3p24.3b"; transcript_id "ERVLE_3p24.3b"; locus "ERVLE_3p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0678"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "3696"; repStart "-1698"; ### HERVEA_3p24.3a ### chr3 rmsk gene 19481910 19484114 . - . gene_id "HERVEA_3p24.3a"; transcript_id "HERVEA_3p24.3a"; locus "HERVEA_3p24.3a"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0020"; model_cov "1750"; model_pct "22.3"; chr3 rmsk exon 19481910 19482384 3381 - . gene_id "HERVEA_3p24.3a"; transcript_id "HERVEA_3p24.3a"; locus "HERVEA_3p24.3a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0020"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 19482385 19484114 60037 - . gene_id "HERVEA_3p24.3a"; transcript_id "HERVEA_3p24.3a"; locus "HERVEA_3p24.3a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0020"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "6097"; repStart "0"; ### HERVEA_3p24.3b ### chr3 rmsk gene 19484214 19490699 . - . gene_id "HERVEA_3p24.3b"; transcript_id "HERVEA_3p24.3b"; locus "HERVEA_3p24.3b"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0021"; model_cov "6095"; model_pct "77.7"; chr3 rmsk exon 19484214 19490231 60037 - . gene_id "HERVEA_3p24.3b"; transcript_id "HERVEA_3p24.3b"; locus "HERVEA_3p24.3b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0021"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1752"; repStart "0"; chr3 rmsk exon 19490232 19490699 3487 - . gene_id "HERVEA_3p24.3b"; transcript_id "HERVEA_3p24.3b"; locus "HERVEA_3p24.3b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0021"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### HERVW_3p24.3 ### chr3 rmsk gene 19871765 19876641 . - . gene_id "HERVW_3p24.3"; transcript_id "HERVW_3p24.3"; locus "HERVW_3p24.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0056"; model_cov "4284"; model_pct "49.7"; chr3 rmsk exon 19871765 19875370 23974 - . gene_id "HERVW_3p24.3"; transcript_id "HERVW_3p24.3"; locus "HERVW_3p24.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0056"; repClass "LTR"; repEnd "4286"; repFamily "ERV1"; repLeft "703"; repStart "-4340"; chr3 rmsk exon 19875427 19876112 23974 - . gene_id "HERVW_3p24.3"; transcript_id "HERVW_3p24.3"; locus "HERVW_3p24.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0056"; repClass "LTR"; repEnd "702"; repFamily "ERV1"; repLeft "1"; repStart "-7924"; chr3 rmsk exon 19876113 19876641 3453 - . gene_id "HERVW_3p24.3"; transcript_id "HERVW_3p24.3"; locus "HERVW_3p24.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0056"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVL40_3p24.3 ### chr3 rmsk gene 19888926 19893646 . + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0058"; model_cov "3300"; model_pct "59.7"; chr3 rmsk exon 19888926 19889365 1004 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "142"; chr3 rmsk exon 19889417 19889749 1979 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "892"; repFamily "ERVL"; repLeft "-4638"; repStart "567"; chr3 rmsk exon 19890002 19890356 1979 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "1257"; repFamily "ERVL"; repLeft "-4273"; repStart "893"; chr3 rmsk exon 19890517 19890649 332 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "-3921"; repStart "1480"; chr3 rmsk exon 19890651 19891083 6675 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "2966"; repFamily "ERVL"; repLeft "-2564"; repStart "2522"; chr3 rmsk exon 19891355 19892691 6675 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "-1162"; repStart "2967"; chr3 rmsk exon 19893328 19893646 790 + . gene_id "HERVL40_3p24.3"; transcript_id "HERVL40_3p24.3"; locus "HERVL40_3p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0058"; repClass "LTR"; repEnd "4659"; repFamily "ERVL"; repLeft "-871"; repStart "4450"; ### ERVLE_3p24.3c ### chr3 rmsk gene 20360832 20361454 . - . gene_id "ERVLE_3p24.3c"; transcript_id "ERVLE_3p24.3c"; locus "ERVLE_3p24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0679"; model_cov "620"; model_pct "10.9"; chr3 rmsk exon 20360832 20361454 1262 - . gene_id "ERVLE_3p24.3c"; transcript_id "ERVLE_3p24.3c"; locus "ERVLE_3p24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0679"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "4644"; repStart "-403"; ### HARLEQUIN_3p24.3 ### chr3 rmsk gene 20363963 20371446 . - . gene_id "HARLEQUIN_3p24.3"; transcript_id "HARLEQUIN_3p24.3"; locus "HARLEQUIN_3p24.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0042"; model_cov "6498"; model_pct "94.2"; chr3 rmsk exon 20363963 20364428 3549 - . gene_id "HARLEQUIN_3p24.3"; transcript_id "HARLEQUIN_3p24.3"; locus "HARLEQUIN_3p24.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0042"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 20364429 20369536 38178 - . gene_id "HARLEQUIN_3p24.3"; transcript_id "HARLEQUIN_3p24.3"; locus "HARLEQUIN_3p24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0042"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1813"; repStart "0"; chr3 rmsk exon 20369520 20370984 8165 - . gene_id "HARLEQUIN_3p24.3"; transcript_id "HARLEQUIN_3p24.3"; locus "HARLEQUIN_3p24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0042"; repClass "LTR"; repEnd "1416"; repFamily "ERV1"; repLeft "1"; repStart "-5480"; chr3 rmsk exon 20370985 20371446 3509 - . gene_id "HARLEQUIN_3p24.3"; transcript_id "HARLEQUIN_3p24.3"; locus "HARLEQUIN_3p24.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0042"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_3p24.3a ### chr3 rmsk gene 20384418 20385540 . + . gene_id "MER41_3p24.3a"; transcript_id "MER41_3p24.3a"; locus "MER41_3p24.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0076"; model_cov "1550"; model_pct "26.1"; chr3 rmsk exon 20384418 20385540 4328 + . gene_id "MER41_3p24.3a"; transcript_id "MER41_3p24.3a"; locus "MER41_3p24.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0076"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "-1905"; repStart "2491"; ### MER41_3p24.3b ### chr3 rmsk gene 20448123 20453049 . - . gene_id "MER41_3p24.3b"; transcript_id "MER41_3p24.3b"; locus "MER41_3p24.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0077"; model_cov "6555"; model_pct "100.0"; chr3 rmsk exon 20448123 20453049 12308 - . gene_id "MER41_3p24.3b"; transcript_id "MER41_3p24.3b"; locus "MER41_3p24.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0077"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-610"; repStart "-1"; ### HML3_3p24.3 ### chr3 rmsk gene 20614383 20620490 . - . gene_id "HML3_3p24.3"; transcript_id "HML3_3p24.3"; locus "HML3_3p24.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0035"; model_cov "5095"; model_pct "84.6"; chr3 rmsk exon 20614383 20614883 4022 - . gene_id "HML3_3p24.3"; transcript_id "HML3_3p24.3"; locus "HML3_3p24.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0035"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 20614884 20617187 19086 - . gene_id "HML3_3p24.3"; transcript_id "HML3_3p24.3"; locus "HML3_3p24.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0035"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr3 rmsk exon 20617188 20619975 23090 - . gene_id "HML3_3p24.3"; transcript_id "HML3_3p24.3"; locus "HML3_3p24.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0035"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr3 rmsk exon 20619976 20620490 4166 - . gene_id "HML3_3p24.3"; transcript_id "HML3_3p24.3"; locus "HML3_3p24.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0035"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_3p24.3f ### chr3 rmsk gene 20871639 20877490 . - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_0242"; model_cov "2834"; model_pct "50.1"; chr3 rmsk exon 20871639 20872007 2723 - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0242"; prev_strand "+"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-72"; repStart "1"; chr3 rmsk exon 20872046 20872124 2723 - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0242"; prev_strand "+"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "373"; chr3 rmsk exon 20872125 20873027 7013 - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0242"; prev_strand "+"; repClass "LTR"; repEnd "887"; repFamily "ERVL"; repLeft "-4767"; repStart "1"; chr3 rmsk exon 20873027 20873852 6499 - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0242"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "4507"; repStart "-291"; chr3 rmsk exon 20875538 20877490 14983 - . gene_id "HERVL_3p24.3f"; transcript_id "HERVL_3p24.3f"; locus "HERVL_3p24.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0242"; repClass "LTR"; repEnd "4518"; repFamily "ERVL"; repLeft "2540"; repStart "-1136"; ### MER4_3p24.3c ### chr3 rmsk gene 20960401 20964089 . + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0136"; model_cov "2560"; model_pct "38.8"; chr3 rmsk exon 20960401 20960871 3342 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0136"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 20960875 20961481 2676 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0136"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr3 rmsk exon 20961450 20961562 524 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0136"; repClass "LTR"; repEnd "832"; repFamily "ERV1"; repLeft "-5766"; repStart "741"; chr3 rmsk exon 20961579 20962275 11000 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0136"; repClass "LTR"; repEnd "5521"; repFamily "ERV1"; repLeft "-1077"; repStart "4810"; chr3 rmsk exon 20962571 20963623 11000 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0136"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "5522"; chr3 rmsk exon 20963631 20964089 3114 + . gene_id "MER4_3p24.3c"; transcript_id "MER4_3p24.3c"; locus "MER4_3p24.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0136"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVH_3p24.3b ### chr3 rmsk gene 20967541 20973231 . - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0224"; model_cov "4908"; model_pct "63.6"; chr3 rmsk exon 20967541 20967951 2649 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 20967952 20968325 2199 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 20968324 20968538 1406 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 20968540 20969202 4303 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 20969205 20969707 3229 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 20969698 20969842 798 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 20969837 20972817 19969 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 20972820 20973231 2644 - . gene_id "HERVH_3p24.3b"; transcript_id "HERVH_3p24.3b"; locus "HERVH_3p24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0224"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4B_3p24.3 ### chr3 rmsk gene 20986065 20995620 . - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0082"; model_cov "6272"; model_pct "92.8"; chr3 rmsk exon 20986065 20986820 5571 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 20987684 20989023 7386 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "5235"; repStart "-113"; chr3 rmsk exon 20989814 20990420 1718 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "5226"; repFamily "ERV1"; repLeft "4448"; repStart "-1532"; chr3 rmsk exon 20990418 20990533 3326 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "4086"; repFamily "ERV1"; repLeft "3935"; repStart "-2672"; chr3 rmsk exon 20991192 20994899 7707 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "3934"; repFamily "ERV1"; repLeft "1"; repStart "-2824"; chr3 rmsk exon 20994900 20995620 5060 - . gene_id "MER4B_3p24.3"; transcript_id "MER4B_3p24.3"; locus "MER4B_3p24.3"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0082"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3p24.3c ### chr3 rmsk gene 21189020 21194203 . - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0225"; model_cov "4389"; model_pct "56.9"; chr3 rmsk exon 21189020 21189423 2481 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 21189424 21189801 2460 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 21189800 21190011 1333 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 21190013 21190675 4445 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 21190678 21191532 6000 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr3 rmsk exon 21191512 21193721 14908 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "817"; repStart "-4718"; chr3 rmsk exon 21193715 21193802 620 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-7625"; chr3 rmsk exon 21193805 21194203 2520 - . gene_id "HERVH_3p24.3c"; transcript_id "HERVH_3p24.3c"; locus "HERVH_3p24.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0225"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### HERVH_3p24.3d ### chr3 rmsk gene 21377907 21382955 . - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0226"; model_cov "4303"; model_pct "55.8"; chr3 rmsk exon 21377907 21378313 2624 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr3 rmsk exon 21378314 21379472 8141 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr3 rmsk exon 21379446 21380081 4107 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr3 rmsk exon 21380068 21380256 1280 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr3 rmsk exon 21380259 21380762 3389 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 21380753 21380899 951 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 21380879 21382477 10806 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1409"; repStart "-4718"; chr3 rmsk exon 21382465 21382544 581 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "80"; repFamily "ERV1"; repLeft "1"; repStart "-7633"; chr3 rmsk exon 21382547 21382955 2517 - . gene_id "HERVH_3p24.3d"; transcript_id "HERVH_3p24.3d"; locus "HERVH_3p24.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0226"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_3p24.3 ### chr3 rmsk gene 21542639 21548245 . + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0075"; model_cov "4378"; model_pct "83.9"; chr3 rmsk exon 21542639 21542962 1263 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0075"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr3 rmsk exon 21542963 21543030 2067 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0075"; repClass "LTR"; repEnd "63"; repFamily "ERV1"; repLeft "-5154"; repStart "1"; chr3 rmsk exon 21543320 21543947 2067 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0075"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "64"; chr3 rmsk exon 21543941 21543983 335 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0075"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr3 rmsk exon 21543981 21547604 20577 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0075"; repClass "LTR"; repEnd "5200"; repFamily "ERV1"; repLeft "-17"; repStart "1655"; chr3 rmsk exon 21547911 21547935 2288 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0075"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5201"; chr3 rmsk exon 21547936 21548245 1454 + . gene_id "MER61_3p24.3"; transcript_id "MER61_3p24.3"; locus "MER61_3p24.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0075"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_3p24.3d ### chr3 rmsk gene 22023929 22030341 . + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0244"; model_cov "5681"; model_pct "100.0"; chr3 rmsk exon 22023929 22024387 2762 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr3 rmsk exon 22024388 22024529 1043 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "152"; repFamily "ERVL"; repLeft "-5502"; repStart "1"; chr3 rmsk exon 22024613 22028919 20481 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "4683"; repFamily "ERVL"; repLeft "-971"; repStart "123"; chr3 rmsk exon 22028954 22029868 20481 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4684"; chr3 rmsk exon 22029869 22030256 2663 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-38"; repStart "1"; chr3 rmsk exon 22030303 22030341 2663 + . gene_id "HERVL_3p24.3d"; transcript_id "HERVL_3p24.3d"; locus "HERVL_3p24.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0244"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "407"; ### ERVLE_3p24.3d ### chr3 rmsk gene 22090280 22091726 . + . gene_id "ERVLE_3p24.3d"; transcript_id "ERVLE_3p24.3d"; locus "ERVLE_3p24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0682"; model_cov "1205"; model_pct "21.3"; chr3 rmsk exon 22090280 22090551 362 + . gene_id "ERVLE_3p24.3d"; transcript_id "ERVLE_3p24.3d"; locus "ERVLE_3p24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0682"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "-5309"; repStart "95"; chr3 rmsk exon 22090787 22091256 783 + . gene_id "ERVLE_3p24.3d"; transcript_id "ERVLE_3p24.3d"; locus "ERVLE_3p24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0682"; repClass "LTR"; repEnd "1162"; repFamily "ERVL"; repLeft "-4505"; repStart "645"; chr3 rmsk exon 22091325 22091726 895 + . gene_id "ERVLE_3p24.3d"; transcript_id "ERVLE_3p24.3d"; locus "ERVLE_3p24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0682"; repClass "LTR"; repEnd "1759"; repFamily "ERVL"; repLeft "-3908"; repStart "1334"; ### HERVL_3p24.3e ### chr3 rmsk gene 22516230 22518002 . + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0245"; model_cov "683"; model_pct "12.1"; chr3 rmsk exon 22516230 22516638 2801 + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0245"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr3 rmsk exon 22516870 22517467 4436 + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0245"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "-3390"; repStart "1655"; chr3 rmsk exon 22517470 22517544 587 + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0245"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5580"; chr3 rmsk exon 22517545 22517881 2410 + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0245"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr3 rmsk exon 22517942 22518002 2410 + . gene_id "HERVL_3p24.3e"; transcript_id "HERVL_3p24.3e"; locus "HERVL_3p24.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0245"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "399"; ### ERVLE_3p24.3e ### chr3 rmsk gene 23443952 23445979 . - . gene_id "ERVLE_3p24.3e"; transcript_id "ERVLE_3p24.3e"; locus "ERVLE_3p24.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0684"; model_cov "1916"; model_pct "33.8"; chr3 rmsk exon 23443952 23445603 1601 - . gene_id "ERVLE_3p24.3e"; transcript_id "ERVLE_3p24.3e"; locus "ERVLE_3p24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0684"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "3610"; repStart "-495"; chr3 rmsk exon 23445651 23445979 728 - . gene_id "ERVLE_3p24.3e"; transcript_id "ERVLE_3p24.3e"; locus "ERVLE_3p24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0684"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "3423"; repStart "-1890"; ### ERVLE_3p24.3f ### chr3 rmsk gene 23446033 23446982 . - . gene_id "ERVLE_3p24.3f"; transcript_id "ERVLE_3p24.3f"; locus "ERVLE_3p24.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0685"; model_cov "995"; model_pct "17.6"; chr3 rmsk exon 23446033 23446798 728 - . gene_id "ERVLE_3p24.3f"; transcript_id "ERVLE_3p24.3f"; locus "ERVLE_3p24.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0685"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "2950"; repStart "-1890"; chr3 rmsk exon 23446818 23446982 628 - . gene_id "ERVLE_3p24.3f"; transcript_id "ERVLE_3p24.3f"; locus "ERVLE_3p24.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0685"; repClass "LTR"; repEnd "2728"; repFamily "ERVL"; repLeft "2560"; repStart "-2939"; ### ERVLB4_3p24.2 ### chr3 rmsk gene 24063621 24067835 . - . gene_id "ERVLB4_3p24.2"; transcript_id "ERVLB4_3p24.2"; locus "ERVLB4_3p24.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0291"; model_cov "3564"; model_pct "62.4"; chr3 rmsk exon 24063621 24063671 5792 - . gene_id "ERVLB4_3p24.2"; transcript_id "ERVLB4_3p24.2"; locus "ERVLB4_3p24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0291"; repClass "LTR"; repEnd "3566"; repFamily "ERVL"; repLeft "3525"; repStart "-2148"; chr3 rmsk exon 24063972 24067326 13798 - . gene_id "ERVLB4_3p24.2"; transcript_id "ERVLB4_3p24.2"; locus "ERVLB4_3p24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0291"; repClass "LTR"; repEnd "3524"; repFamily "ERVL"; repLeft "1"; repStart "-2190"; chr3 rmsk exon 24067327 24067835 2146 - . gene_id "ERVLB4_3p24.2"; transcript_id "ERVLB4_3p24.2"; locus "ERVLB4_3p24.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0291"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "6"; repStart "0"; ### ERVLE_3p24.2a ### chr3 rmsk gene 24676396 24677387 . + . gene_id "ERVLE_3p24.2a"; transcript_id "ERVLE_3p24.2a"; locus "ERVLE_3p24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0686"; model_cov "810"; model_pct "14.3"; chr3 rmsk exon 24676396 24676891 979 + . gene_id "ERVLE_3p24.2a"; transcript_id "ERVLE_3p24.2a"; locus "ERVLE_3p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0686"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-796"; repStart "4352"; chr3 rmsk exon 24677154 24677324 411 + . gene_id "ERVLE_3p24.2a"; transcript_id "ERVLE_3p24.2a"; locus "ERVLE_3p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0686"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "-666"; repStart "4776"; chr3 rmsk exon 24677321 24677387 259 + . gene_id "ERVLE_3p24.2a"; transcript_id "ERVLE_3p24.2a"; locus "ERVLE_3p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0686"; repClass "LTR"; repEnd "5189"; repFamily "ERVL"; repLeft "-478"; repStart "5123"; ### ERVLE_3p24.2b ### chr3 rmsk gene 25698820 25699426 . - . gene_id "ERVLE_3p24.2b"; transcript_id "ERVLE_3p24.2b"; locus "ERVLE_3p24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0687"; model_cov "596"; model_pct "10.5"; chr3 rmsk exon 25698820 25698973 531 - . gene_id "ERVLE_3p24.2b"; transcript_id "ERVLE_3p24.2b"; locus "ERVLE_3p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0687"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "5122"; repStart "-391"; chr3 rmsk exon 25699005 25699426 536 - . gene_id "ERVLE_3p24.2b"; transcript_id "ERVLE_3p24.2b"; locus "ERVLE_3p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0687"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "4590"; repStart "-635"; ### ERV316A3_3p24.2 ### chr3 rmsk gene 25798176 25800254 . - . gene_id "ERV316A3_3p24.2"; transcript_id "ERV316A3_3p24.2"; locus "ERV316A3_3p24.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0451"; model_cov "1756"; model_pct "33.6"; chr3 rmsk exon 25798176 25798494 1098 - . gene_id "ERV316A3_3p24.2"; transcript_id "ERV316A3_3p24.2"; locus "ERV316A3_3p24.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0451"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "120"; repStart "0"; chr3 rmsk exon 25798538 25800254 3071 - . gene_id "ERV316A3_3p24.2"; transcript_id "ERV316A3_3p24.2"; locus "ERV316A3_3p24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0451"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "3469"; repStart "-1"; ### MER34B_3p24.2 ### chr3 rmsk gene 25861541 25863258 . + . gene_id "MER34B_3p24.2"; transcript_id "MER34B_3p24.2"; locus "MER34B_3p24.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0055"; model_cov "1100"; model_pct "20.5"; chr3 rmsk exon 25861541 25861612 341 + . gene_id "MER34B_3p24.2"; transcript_id "MER34B_3p24.2"; locus "MER34B_3p24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0055"; repClass "LTR"; repEnd "4323"; repFamily "ERV1"; repLeft "-1033"; repStart "4254"; chr3 rmsk exon 25861842 25862385 2614 + . gene_id "MER34B_3p24.2"; transcript_id "MER34B_3p24.2"; locus "MER34B_3p24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0055"; repClass "LTR"; repEnd "4805"; repFamily "ERV1"; repLeft "-551"; repStart "4323"; chr3 rmsk exon 25862696 25862720 2614 + . gene_id "MER34B_3p24.2"; transcript_id "MER34B_3p24.2"; locus "MER34B_3p24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0055"; repClass "LTR"; repEnd "4814"; repFamily "ERV1"; repLeft "-542"; repStart "4806"; chr3 rmsk exon 25862746 25863258 2614 + . gene_id "MER34B_3p24.2"; transcript_id "MER34B_3p24.2"; locus "MER34B_3p24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0055"; repClass "LTR"; repEnd "5356"; repFamily "ERV1"; repLeft "0"; repStart "4815"; ### ERVLE_3p24.2c ### chr3 rmsk gene 25986027 25988001 . - . gene_id "ERVLE_3p24.2c"; transcript_id "ERVLE_3p24.2c"; locus "ERVLE_3p24.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0688"; model_cov "997"; model_pct "17.6"; chr3 rmsk exon 25986027 25986250 621 - . gene_id "ERVLE_3p24.2c"; transcript_id "ERVLE_3p24.2c"; locus "ERVLE_3p24.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0688"; repClass "LTR"; repEnd "4334"; repFamily "ERVL"; repLeft "4117"; repStart "-1333"; chr3 rmsk exon 25986901 25987166 590 - . gene_id "ERVLE_3p24.2c"; transcript_id "ERVLE_3p24.2c"; locus "ERVLE_3p24.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0688"; repClass "LTR"; repEnd "3671"; repFamily "ERVL"; repLeft "3421"; repStart "-1996"; chr3 rmsk exon 25987557 25988001 745 - . gene_id "ERVLE_3p24.2c"; transcript_id "ERVLE_3p24.2c"; locus "ERVLE_3p24.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0688"; repClass "LTR"; repEnd "3157"; repFamily "ERVL"; repLeft "2627"; repStart "-2510"; ### HERVH_3p24.2 ### chr3 rmsk gene 26157652 26165575 . - . gene_id "HERVH_3p24.2"; transcript_id "HERVH_3p24.2"; locus "HERVH_3p24.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0227"; model_cov "7567"; model_pct "98.1"; chr3 rmsk exon 26157652 26158062 2925 - . gene_id "HERVH_3p24.2"; transcript_id "HERVH_3p24.2"; locus "HERVH_3p24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0227"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "1"; repStart "-44"; chr3 rmsk exon 26158063 26162709 25510 - . gene_id "HERVH_3p24.2"; transcript_id "HERVH_3p24.2"; locus "HERVH_3p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0227"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3139"; repStart "0"; chr3 rmsk exon 26162689 26165470 14223 - . gene_id "HERVH_3p24.2"; transcript_id "HERVH_3p24.2"; locus "HERVH_3p24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0227"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2"; repStart "-4718"; chr3 rmsk exon 26165471 26165575 750 - . gene_id "HERVH_3p24.2"; transcript_id "HERVH_3p24.2"; locus "HERVH_3p24.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0227"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "347"; repStart "0"; ### ERVLE_3p24.1a ### chr3 rmsk gene 26348577 26349817 . + . gene_id "ERVLE_3p24.1a"; transcript_id "ERVLE_3p24.1a"; locus "ERVLE_3p24.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0689"; model_cov "746"; model_pct "13.2"; chr3 rmsk exon 26348577 26348755 279 + . gene_id "ERVLE_3p24.1a"; transcript_id "ERVLE_3p24.1a"; locus "ERVLE_3p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0689"; repClass "LTR"; repEnd "1968"; repFamily "ERVL"; repLeft "-3699"; repStart "1743"; chr3 rmsk exon 26349332 26349817 838 + . gene_id "ERVLE_3p24.1a"; transcript_id "ERVLE_3p24.1a"; locus "ERVLE_3p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0689"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "-3239"; repStart "1907"; ### ERVLE_3p24.1b ### chr3 rmsk gene 26406373 26406986 . - . gene_id "ERVLE_3p24.1b"; transcript_id "ERVLE_3p24.1b"; locus "ERVLE_3p24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0690"; model_cov "581"; model_pct "10.3"; chr3 rmsk exon 26406373 26406799 1373 - . gene_id "ERVLE_3p24.1b"; transcript_id "ERVLE_3p24.1b"; locus "ERVLE_3p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0690"; repClass "LTR"; repEnd "2181"; repFamily "ERVL"; repLeft "1744"; repStart "-3486"; chr3 rmsk exon 26406844 26406986 307 - . gene_id "ERVLE_3p24.1b"; transcript_id "ERVLE_3p24.1b"; locus "ERVLE_3p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0690"; repClass "LTR"; repEnd "1689"; repFamily "ERVL"; repLeft "1545"; repStart "-3978"; ### ERVLB4_3p24.1a ### chr3 rmsk gene 26501345 26503831 . + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0293"; model_cov "1923"; model_pct "33.7"; chr3 rmsk exon 26501345 26501521 621 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "-5055"; repStart "487"; chr3 rmsk exon 26501557 26502229 2173 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "1485"; repFamily "ERVL"; repLeft "-4229"; repStart "766"; chr3 rmsk exon 26502218 26502362 252 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "2282"; repFamily "ERVL"; repLeft "-3432"; repStart "2147"; chr3 rmsk exon 26502364 26502859 2318 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "-1507"; repStart "3716"; chr3 rmsk exon 26503340 26503656 919 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "-3"; repStart "5305"; chr3 rmsk exon 26503659 26503831 683 + . gene_id "ERVLB4_3p24.1a"; transcript_id "ERVLB4_3p24.1a"; locus "ERVLB4_3p24.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0293"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "-229"; repStart "1"; ### MER61_3p24.1a ### chr3 rmsk gene 26820869 26825017 . + . gene_id "MER61_3p24.1a"; transcript_id "MER61_3p24.1a"; locus "MER61_3p24.1a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0076"; model_cov "5079"; model_pct "97.4"; chr3 rmsk exon 26820869 26822265 3930 + . gene_id "MER61_3p24.1a"; transcript_id "MER61_3p24.1a"; locus "MER61_3p24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0076"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "-4633"; repStart "-1688"; chr3 rmsk exon 26822256 26823020 11158 + . gene_id "MER61_3p24.1a"; transcript_id "MER61_3p24.1a"; locus "MER61_3p24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0076"; repClass "LTR"; repEnd "2624"; repFamily "ERV1"; repLeft "-2593"; repStart "2250"; chr3 rmsk exon 26823511 26825017 11158 + . gene_id "MER61_3p24.1a"; transcript_id "MER61_3p24.1a"; locus "MER61_3p24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0076"; repClass "LTR"; repEnd "5058"; repFamily "ERV1"; repLeft "-159"; repStart "2625"; ### HERVW_3p24.1 ### chr3 rmsk gene 27001024 27006410 . + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0057"; model_cov "4497"; model_pct "52.1"; chr3 rmsk exon 27001024 27001543 3950 + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0057"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "262"; chr3 rmsk exon 27001599 27003508 24640 + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0057"; repClass "LTR"; repEnd "3861"; repFamily "ERV1"; repLeft "-4765"; repStart "1953"; chr3 rmsk exon 27003797 27004999 24640 + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0057"; repClass "LTR"; repEnd "5064"; repFamily "ERV1"; repLeft "-3562"; repStart "3862"; chr3 rmsk exon 27004994 27006317 9951 + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0057"; repClass "LTR"; repEnd "8195"; repFamily "ERV1"; repLeft "-431"; repStart "6902"; chr3 rmsk exon 27006313 27006410 605 + . gene_id "HERVW_3p24.1"; transcript_id "HERVW_3p24.1"; locus "HERVW_3p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0057"; repClass "LTR"; repEnd "8255"; repFamily "ERV1"; repLeft "-371"; repStart "8161"; ### ERVLE_3p24.1c ### chr3 rmsk gene 27138754 27140686 . + . gene_id "ERVLE_3p24.1c"; transcript_id "ERVLE_3p24.1c"; locus "ERVLE_3p24.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0693"; model_cov "1859"; model_pct "32.8"; chr3 rmsk exon 27138754 27139165 785 + . gene_id "ERVLE_3p24.1c"; transcript_id "ERVLE_3p24.1c"; locus "ERVLE_3p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0693"; repClass "LTR"; repEnd "525"; repFamily "ERVL"; repLeft "-5142"; repStart "99"; chr3 rmsk exon 27139283 27140686 3189 + . gene_id "ERVLE_3p24.1c"; transcript_id "ERVLE_3p24.1c"; locus "ERVLE_3p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0693"; repClass "LTR"; repEnd "2109"; repFamily "ERVL"; repLeft "-3558"; repStart "676"; ### HERVH_3p24.1a ### chr3 rmsk gene 27549582 27553803 . - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0228"; model_cov "3298"; model_pct "42.8"; chr3 rmsk exon 27549582 27550002 2133 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "-6"; repStart "-11"; chr3 rmsk exon 27550003 27550390 2562 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 27550391 27550889 3478 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5318"; repStart "-1894"; chr3 rmsk exon 27550878 27552734 12037 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "2571"; repFamily "ERV1"; repLeft "756"; repStart "-5142"; chr3 rmsk exon 27552723 27552850 292 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "485"; repStart "-7093"; chr3 rmsk exon 27552906 27553371 2735 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr3 rmsk exon 27553372 27553803 3416 - . gene_id "HERVH_3p24.1a"; transcript_id "HERVH_3p24.1a"; locus "HERVH_3p24.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0228"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3p24.1b ### chr3 rmsk gene 27599002 27603163 . + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0229"; model_cov "3754"; model_pct "48.7"; chr3 rmsk exon 27599002 27599433 3448 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 27599434 27600294 2296 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "1182"; repFamily "ERV1"; repLeft "-6531"; repStart "1"; chr3 rmsk exon 27600293 27600566 1466 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2728"; chr3 rmsk exon 27600546 27602263 7238 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "5016"; repFamily "ERV1"; repLeft "-2697"; repStart "3140"; chr3 rmsk exon 27602267 27602699 3078 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr3 rmsk exon 27602700 27603163 3857 + . gene_id "HERVH_3p24.1b"; transcript_id "HERVH_3p24.1b"; locus "HERVH_3p24.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0229"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_3p24.1 ### chr3 rmsk gene 28110979 28112641 . - . gene_id "ERV316A3_3p24.1"; transcript_id "ERV316A3_3p24.1"; locus "ERV316A3_3p24.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0452"; model_cov "1154"; model_pct "22.1"; chr3 rmsk exon 28110979 28111218 531 - . gene_id "ERV316A3_3p24.1"; transcript_id "ERV316A3_3p24.1"; locus "ERV316A3_3p24.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0452"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "87"; repStart "-94"; chr3 rmsk exon 28111220 28111431 2998 - . gene_id "ERV316A3_3p24.1"; transcript_id "ERV316A3_3p24.1"; locus "ERV316A3_3p24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0452"; repClass "LTR"; repEnd "2463"; repFamily "ERVL"; repLeft "2257"; repStart "-2763"; chr3 rmsk exon 28111653 28112641 2998 - . gene_id "ERV316A3_3p24.1"; transcript_id "ERV316A3_3p24.1"; locus "ERV316A3_3p24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0452"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "1308"; repStart "-2970"; ### ERVLB4_3p24.1b ### chr3 rmsk gene 28387910 28390070 . - . gene_id "ERVLB4_3p24.1b"; transcript_id "ERVLB4_3p24.1b"; locus "ERVLB4_3p24.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0294"; model_cov "1455"; model_pct "25.5"; chr3 rmsk exon 28387910 28388322 2026 - . gene_id "ERVLB4_3p24.1b"; transcript_id "ERVLB4_3p24.1b"; locus "ERVLB4_3p24.1b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0294"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "-3"; chr3 rmsk exon 28388342 28389233 2494 - . gene_id "ERVLB4_3p24.1b"; transcript_id "ERVLB4_3p24.1b"; locus "ERVLB4_3p24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0294"; repClass "LTR"; repEnd "5695"; repFamily "ERVL"; repLeft "4677"; repStart "-19"; chr3 rmsk exon 28389231 28389668 2486 - . gene_id "ERVLB4_3p24.1b"; transcript_id "ERVLB4_3p24.1b"; locus "ERVLB4_3p24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0294"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "-5276"; chr3 rmsk exon 28389673 28390070 1970 - . gene_id "ERVLB4_3p24.1b"; transcript_id "ERVLB4_3p24.1b"; locus "ERVLB4_3p24.1b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0294"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "7"; repStart "-8"; ### HERVL_3p24.1 ### chr3 rmsk gene 28438982 28445253 . - . gene_id "HERVL_3p24.1"; transcript_id "HERVL_3p24.1"; locus "HERVL_3p24.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0246"; model_cov "5649"; model_pct "99.9"; chr3 rmsk exon 28438982 28439031 359 - . gene_id "HERVL_3p24.1"; transcript_id "HERVL_3p24.1"; locus "HERVL_3p24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0246"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "395"; repStart "0"; chr3 rmsk exon 28439147 28439556 3001 - . gene_id "HERVL_3p24.1"; transcript_id "HERVL_3p24.1"; locus "HERVL_3p24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0246"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-110"; repStart "-52"; chr3 rmsk exon 28439557 28445105 38453 - . gene_id "HERVL_3p24.1"; transcript_id "HERVL_3p24.1"; locus "HERVL_3p24.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0246"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr3 rmsk exon 28445114 28445253 293 - . gene_id "HERVL_3p24.1"; transcript_id "HERVL_3p24.1"; locus "HERVL_3p24.1"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0246"; repClass "LTR"; repEnd "713"; repFamily "ERVL"; repLeft "609"; repStart "-4"; ### ERVLB4_3p24.1c ### chr3 rmsk gene 28538837 28545324 . + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0295"; model_cov "5069"; model_pct "88.7"; chr3 rmsk exon 28538837 28539314 1577 + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0295"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "5"; chr3 rmsk exon 28539323 28540437 17169 + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0295"; repClass "LTR"; repEnd "1154"; repFamily "ERVL"; repLeft "-4560"; repStart "3"; chr3 rmsk exon 28541532 28542674 17169 + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0295"; repClass "LTR"; repEnd "2383"; repFamily "ERVL"; repLeft "-3331"; repStart "1155"; chr3 rmsk exon 28542807 28543742 17169 + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0295"; repClass "LTR"; repEnd "3391"; repFamily "ERVL"; repLeft "-2323"; repStart "2384"; chr3 rmsk exon 28543745 28545324 9246 + . gene_id "ERVLB4_3p24.1c"; transcript_id "ERVLB4_3p24.1c"; locus "ERVLB4_3p24.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0295"; repClass "LTR"; repEnd "5240"; repFamily "ERVL"; repLeft "-474"; repStart "3557"; ### ERVLB4_3p24.1d ### chr3 rmsk gene 28627171 28628957 . + . gene_id "ERVLB4_3p24.1d"; transcript_id "ERVLB4_3p24.1d"; locus "ERVLB4_3p24.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0296"; model_cov "1033"; model_pct "18.1"; chr3 rmsk exon 28627171 28627775 3897 + . gene_id "ERVLB4_3p24.1d"; transcript_id "ERVLB4_3p24.1d"; locus "ERVLB4_3p24.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0296"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-481"; repStart "4608"; chr3 rmsk exon 28627772 28628146 2211 + . gene_id "ERVLB4_3p24.1d"; transcript_id "ERVLB4_3p24.1d"; locus "ERVLB4_3p24.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0296"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "-4"; repStart "5302"; chr3 rmsk exon 28628468 28628957 2076 + . gene_id "ERVLB4_3p24.1d"; transcript_id "ERVLB4_3p24.1d"; locus "ERVLB4_3p24.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0296"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-58"; repStart "3"; ### HUERSP2_3p24.1 ### chr3 rmsk gene 28808210 28811250 . - . gene_id "HUERSP2_3p24.1"; transcript_id "HUERSP2_3p24.1"; locus "HUERSP2_3p24.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0026"; model_cov "1614"; model_pct "52.3"; chr3 rmsk exon 28808210 28808990 5249 - . gene_id "HUERSP2_3p24.1"; transcript_id "HUERSP2_3p24.1"; locus "HUERSP2_3p24.1"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0026"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 28808991 28810577 10263 - . gene_id "HUERSP2_3p24.1"; transcript_id "HUERSP2_3p24.1"; locus "HUERSP2_3p24.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0026"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1474"; repStart "0"; chr3 rmsk exon 28810591 28811250 4331 - . gene_id "HUERSP2_3p24.1"; transcript_id "HUERSP2_3p24.1"; locus "HUERSP2_3p24.1"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0026"; repClass "LTR"; repEnd "669"; repFamily "ERV1"; repLeft "1"; repStart "-130"; ### ERVLE_3p24.1d ### chr3 rmsk gene 28900238 28904008 . - . gene_id "ERVLE_3p24.1d"; transcript_id "ERVLE_3p24.1d"; locus "ERVLE_3p24.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0694"; model_cov "1859"; model_pct "32.8"; chr3 rmsk exon 28900238 28900721 840 - . gene_id "ERVLE_3p24.1d"; transcript_id "ERVLE_3p24.1d"; locus "ERVLE_3p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0694"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "5103"; repStart "-72"; chr3 rmsk exon 28900970 28901190 452 - . gene_id "ERVLE_3p24.1d"; transcript_id "ERVLE_3p24.1d"; locus "ERVLE_3p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0694"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "4597"; repStart "-844"; chr3 rmsk exon 28901429 28902297 2238 - . gene_id "ERVLE_3p24.1d"; transcript_id "ERVLE_3p24.1d"; locus "ERVLE_3p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0694"; repClass "LTR"; repEnd "3942"; repFamily "ERVL"; repLeft "3092"; repStart "-1725"; chr3 rmsk exon 28903722 28904008 2238 - . gene_id "ERVLE_3p24.1d"; transcript_id "ERVLE_3p24.1d"; locus "ERVLE_3p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0694"; repClass "LTR"; repEnd "3091"; repFamily "ERVL"; repLeft "2800"; repStart "-2576"; ### ERVLE_3p24.1e ### chr3 rmsk gene 29215164 29218038 . - . gene_id "ERVLE_3p24.1e"; transcript_id "ERVLE_3p24.1e"; locus "ERVLE_3p24.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0695"; model_cov "2921"; model_pct "51.5"; chr3 rmsk exon 29215164 29215298 270 - . gene_id "ERVLE_3p24.1e"; transcript_id "ERVLE_3p24.1e"; locus "ERVLE_3p24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0695"; repClass "LTR"; repEnd "5563"; repFamily "ERVL"; repLeft "5420"; repStart "-104"; chr3 rmsk exon 29215365 29218038 5413 - . gene_id "ERVLE_3p24.1e"; transcript_id "ERVLE_3p24.1e"; locus "ERVLE_3p24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0695"; repClass "LTR"; repEnd "5298"; repFamily "ERVL"; repLeft "2520"; repStart "-369"; ### MER61_3p24.1b ### chr3 rmsk gene 30091851 30092571 . - . gene_id "MER61_3p24.1b"; transcript_id "MER61_3p24.1b"; locus "MER61_3p24.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0078"; model_cov "731"; model_pct "14.0"; chr3 rmsk exon 30091851 30092571 3105 - . gene_id "MER61_3p24.1b"; transcript_id "MER61_3p24.1b"; locus "MER61_3p24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0078"; repClass "LTR"; repEnd "4722"; repFamily "ERV1"; repLeft "3991"; repStart "-495"; ### MER41_3p24.1 ### chr3 rmsk gene 30274612 30281091 . + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0080"; model_cov "5919"; model_pct "99.5"; chr3 rmsk exon 30274612 30275152 3719 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0080"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr3 rmsk exon 30275238 30276997 5463 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0080"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1"; chr3 rmsk exon 30276974 30277024 287 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0080"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "-3726"; repStart "2167"; chr3 rmsk exon 30277006 30279139 13708 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0080"; repClass "LTR"; repEnd "3051"; repFamily "ERV1"; repLeft "-2895"; repStart "316"; chr3 rmsk exon 30279443 30280537 13708 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0080"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4829"; chr3 rmsk exon 30280538 30281091 4394 + . gene_id "MER41_3p24.1"; transcript_id "MER41_3p24.1"; locus "MER41_3p24.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0080"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_3p23 ### chr3 rmsk gene 31042678 31047749 . + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0079"; model_cov "4336"; model_pct "83.1"; chr3 rmsk exon 31042678 31043002 1854 + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0079"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 31043062 31043546 2232 + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0079"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "64"; chr3 rmsk exon 31043595 31043641 271 + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0079"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "732"; chr3 rmsk exon 31043678 31047417 22169 + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0079"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1411"; chr3 rmsk exon 31047418 31047749 1638 + . gene_id "MER61_3p23"; transcript_id "MER61_3p23"; locus "MER61_3p23"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0079"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3p23 ### chr3 rmsk gene 31368918 31370095 . + . gene_id "ERVLE_3p23"; transcript_id "ERVLE_3p23"; locus "ERVLE_3p23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0696"; model_cov "1222"; model_pct "21.6"; chr3 rmsk exon 31368918 31369269 560 + . gene_id "ERVLE_3p23"; transcript_id "ERVLE_3p23"; locus "ERVLE_3p23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0696"; repClass "LTR"; repEnd "3268"; repFamily "ERVL"; repLeft "-2399"; repStart "2907"; chr3 rmsk exon 31369282 31370095 2547 + . gene_id "ERVLE_3p23"; transcript_id "ERVLE_3p23"; locus "ERVLE_3p23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0696"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "-1841"; repStart "2965"; ### MER41_3p22.3a ### chr3 rmsk gene 32048690 32057354 . + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0081"; model_cov "5223"; model_pct "87.8"; chr3 rmsk exon 32048690 32049315 4543 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0081"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 32049316 32049950 4402 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "640"; repFamily "ERV1"; repLeft "-5306"; repStart "1"; chr3 rmsk exon 32050064 32050661 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "1956"; repFamily "ERV1"; repLeft "-3990"; repStart "1354"; chr3 rmsk exon 32050960 32051965 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "2959"; repFamily "ERV1"; repLeft "-2987"; repStart "1957"; chr3 rmsk exon 32052270 32052358 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "3060"; repFamily "ERV1"; repLeft "-2886"; repStart "2960"; chr3 rmsk exon 32052980 32053696 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "3804"; repFamily "ERV1"; repLeft "-2142"; repStart "3061"; chr3 rmsk exon 32053996 32054526 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "4323"; repFamily "ERV1"; repLeft "-1623"; repStart "3805"; chr3 rmsk exon 32054830 32055191 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "-1279"; repStart "4324"; chr3 rmsk exon 32055484 32056738 30808 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0081"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4668"; chr3 rmsk exon 32056739 32057354 3965 + . gene_id "MER41_3p22.3a"; transcript_id "MER41_3p22.3a"; locus "MER41_3p22.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0081"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3p22.3a ### chr3 rmsk gene 32067467 32076087 . + . gene_id "HERVH_3p22.3a"; transcript_id "HERVH_3p22.3a"; locus "HERVH_3p22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0230"; model_cov "7712"; model_pct "100.0"; chr3 rmsk exon 32067467 32067928 3725 + . gene_id "HERVH_3p22.3a"; transcript_id "HERVH_3p22.3a"; locus "HERVH_3p22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0230"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 32067929 32075775 23906 + . gene_id "HERVH_3p22.3a"; transcript_id "HERVH_3p22.3a"; locus "HERVH_3p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0230"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 32075776 32076087 3470 + . gene_id "HERVH_3p22.3a"; transcript_id "HERVH_3p22.3a"; locus "HERVH_3p22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0230"; repClass "LTR"; repEnd "343"; repFamily "ERV1"; repLeft "-121"; repStart "1"; ### HML6_3p22.3 ### chr3 rmsk gene 32086707 32089604 . - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0011"; model_cov "1800"; model_pct "25.0"; chr3 rmsk exon 32086707 32087149 2973 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "433"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chr3 rmsk exon 32087429 32088640 5507 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "3098"; repFamily "ERVK"; repLeft "1818"; repStart "-4104"; chr3 rmsk exon 32088633 32088731 533 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "1376"; repFamily "ERVK"; repLeft "1280"; repStart "-5826"; chr3 rmsk exon 32088720 32088917 908 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "436"; repStart "-6563"; chr3 rmsk exon 32088915 32089102 772 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "11"; repStart "-6970"; chr3 rmsk exon 32089212 32089604 2788 - . gene_id "HML6_3p22.3"; transcript_id "HML6_3p22.3"; locus "HML6_3p22.3"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0011"; repClass "LTR"; repEnd "433"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### HERVL_3p22.3a ### chr3 rmsk gene 32207768 32209130 . - . gene_id "HERVL_3p22.3a"; transcript_id "HERVL_3p22.3a"; locus "HERVL_3p22.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0247"; model_cov "831"; model_pct "14.7"; chr3 rmsk exon 32207768 32208295 2435 - . gene_id "HERVL_3p22.3a"; transcript_id "HERVL_3p22.3a"; locus "HERVL_3p22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0247"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 32208296 32209130 6343 - . gene_id "HERVL_3p22.3a"; transcript_id "HERVL_3p22.3a"; locus "HERVL_3p22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0247"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4823"; repStart "0"; ### HERVH_3p22.3b ### chr3 rmsk gene 32460939 32466915 . - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0231"; model_cov "5395"; model_pct "69.9"; chr3 rmsk exon 32460939 32461368 2901 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 32461369 32461732 2188 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 32461731 32461946 1459 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 32461948 32463605 9152 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3500"; repStart "-2564"; chr3 rmsk exon 32463605 32463752 927 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 32463747 32466507 15996 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 32466510 32466915 2940 - . gene_id "HERVH_3p22.3b"; transcript_id "HERVH_3p22.3b"; locus "HERVH_3p22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0231"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_3p22.3a ### chr3 rmsk gene 33081521 33082771 . + . gene_id "ERVLB4_3p22.3a"; transcript_id "ERVLB4_3p22.3a"; locus "ERVLB4_3p22.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0298"; model_cov "1383"; model_pct "24.2"; chr3 rmsk exon 33081521 33081633 276 + . gene_id "ERVLB4_3p22.3a"; transcript_id "ERVLB4_3p22.3a"; locus "ERVLB4_3p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0298"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "-4320"; repStart "1277"; chr3 rmsk exon 33081652 33082771 1311 + . gene_id "ERVLB4_3p22.3a"; transcript_id "ERVLB4_3p22.3a"; locus "ERVLB4_3p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0298"; repClass "LTR"; repEnd "2652"; repFamily "ERVL"; repLeft "-3062"; repStart "1386"; ### ERVLE_3p22.3a ### chr3 rmsk gene 33222864 33224908 . - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0699"; model_cov "1636"; model_pct "28.9"; chr3 rmsk exon 33222864 33223059 537 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "5020"; repFamily "ERVL"; repLeft "4829"; repStart "-647"; chr3 rmsk exon 33223147 33223361 420 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "4560"; repStart "-881"; chr3 rmsk exon 33223390 33223590 379 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "4491"; repFamily "ERVL"; repLeft "4293"; repStart "-1176"; chr3 rmsk exon 33223816 33224030 767 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "3896"; repFamily "ERVL"; repLeft "3629"; repStart "-1771"; chr3 rmsk exon 33224301 33224563 767 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "3628"; repFamily "ERVL"; repLeft "3367"; repStart "-2039"; chr3 rmsk exon 33224558 33224908 644 - . gene_id "ERVLE_3p22.3a"; transcript_id "ERVLE_3p22.3a"; locus "ERVLE_3p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0699"; repClass "LTR"; repEnd "3365"; repFamily "ERVL"; repLeft "2872"; repStart "-2302"; ### MER41_3p22.3b ### chr3 rmsk gene 33458693 33461755 . - . gene_id "MER41_3p22.3b"; transcript_id "MER41_3p22.3b"; locus "MER41_3p22.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0082"; model_cov "2179"; model_pct "36.6"; chr3 rmsk exon 33458693 33459799 11285 - . gene_id "MER41_3p22.3b"; transcript_id "MER41_3p22.3b"; locus "MER41_3p22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0082"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "3920"; repStart "-917"; chr3 rmsk exon 33460407 33461430 11285 - . gene_id "MER41_3p22.3b"; transcript_id "MER41_3p22.3b"; locus "MER41_3p22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0082"; repClass "LTR"; repEnd "3919"; repFamily "ERV1"; repLeft "2849"; repStart "-2027"; chr3 rmsk exon 33461743 33461755 11285 - . gene_id "MER41_3p22.3b"; transcript_id "MER41_3p22.3b"; locus "MER41_3p22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0082"; repClass "LTR"; repEnd "2848"; repFamily "ERV1"; repLeft "2848"; repStart "-3098"; ### MER61_3p22.3a ### chr3 rmsk gene 33464819 33466622 . - . gene_id "MER61_3p22.3a"; transcript_id "MER61_3p22.3a"; locus "MER61_3p22.3a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0080"; model_cov "2792"; model_pct "53.5"; chr3 rmsk exon 33464819 33466409 4827 - . gene_id "MER61_3p22.3a"; transcript_id "MER61_3p22.3a"; locus "MER61_3p22.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0080"; repClass "LTR"; repEnd "4835"; repFamily "ERV1"; repLeft "2170"; repStart "-382"; chr3 rmsk exon 33466486 33466622 1073 - . gene_id "MER61_3p22.3a"; transcript_id "MER61_3p22.3a"; locus "MER61_3p22.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0080"; repClass "LTR"; repEnd "-1131"; repFamily "ERV1"; repLeft "-1258"; repStart "-6348"; ### MER101_3p22.3 ### chr3 rmsk gene 33472376 33476864 . - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0087"; model_cov "3550"; model_pct "53.5"; chr3 rmsk exon 33472376 33472417 249 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0087"; repClass "LTR"; repEnd "-42"; repFamily "ERV1"; repLeft "-83"; repStart "-487"; chr3 rmsk exon 33472420 33473035 2402 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6005"; repStart "0"; chr3 rmsk exon 33473036 33473176 1925 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "5900"; repFamily "ERV1"; repLeft "5767"; repStart "-739"; chr3 rmsk exon 33473479 33474099 3697 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "3605"; repStart "-2023"; chr3 rmsk exon 33474410 33474479 3697 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "4218"; repFamily "ERV1"; repLeft "4163"; repStart "-2421"; chr3 rmsk exon 33474787 33474880 3697 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "4162"; repFamily "ERV1"; repLeft "4099"; repStart "-2477"; chr3 rmsk exon 33475202 33476782 4790 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "4098"; repFamily "ERV1"; repLeft "2492"; repStart "-2541"; chr3 rmsk exon 33476816 33476864 259 - . gene_id "MER101_3p22.3"; transcript_id "MER101_3p22.3"; locus "MER101_3p22.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0087"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2310"; repStart "-4281"; ### ERVLE_3p22.3b ### chr3 rmsk gene 34583594 34587014 . - . gene_id "ERVLE_3p22.3b"; transcript_id "ERVLE_3p22.3b"; locus "ERVLE_3p22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0700"; model_cov "2987"; model_pct "52.7"; chr3 rmsk exon 34583594 34584693 1131 - . gene_id "ERVLE_3p22.3b"; transcript_id "ERVLE_3p22.3b"; locus "ERVLE_3p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0700"; repClass "LTR"; repEnd "4693"; repFamily "ERVL"; repLeft "3591"; repStart "-974"; chr3 rmsk exon 34585076 34585809 1671 - . gene_id "ERVLE_3p22.3b"; transcript_id "ERVLE_3p22.3b"; locus "ERVLE_3p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0700"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "2807"; repStart "-2112"; chr3 rmsk exon 34586026 34587014 1645 - . gene_id "ERVLE_3p22.3b"; transcript_id "ERVLE_3p22.3b"; locus "ERVLE_3p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0700"; repClass "LTR"; repEnd "2566"; repFamily "ERVL"; repLeft "1429"; repStart "-3101"; ### HERVH_3p22.3c ### chr3 rmsk gene 34640456 34642481 . - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0233"; model_cov "1497"; model_pct "19.4"; chr3 rmsk exon 34640456 34640906 3467 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 34640907 34641286 2396 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 34641285 34641477 1274 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5623"; repStart "-1894"; chr3 rmsk exon 34641520 34642082 2570 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4664"; repStart "-2564"; chr3 rmsk exon 34642073 34642219 899 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 34642199 34642481 1650 - . gene_id "HERVH_3p22.3c"; transcript_id "HERVH_3p22.3c"; locus "HERVH_3p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0233"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2720"; repStart "-4718"; ### ERVLB4_3p22.3b ### chr3 rmsk gene 34910326 34913972 . - . gene_id "ERVLB4_3p22.3b"; transcript_id "ERVLB4_3p22.3b"; locus "ERVLB4_3p22.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0301"; model_cov "3434"; model_pct "60.1"; chr3 rmsk exon 34910326 34912676 9941 - . gene_id "ERVLB4_3p22.3b"; transcript_id "ERVLB4_3p22.3b"; locus "ERVLB4_3p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0301"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "3317"; repStart "-1"; chr3 rmsk exon 34912682 34913100 3636 - . gene_id "ERVLB4_3p22.3b"; transcript_id "ERVLB4_3p22.3b"; locus "ERVLB4_3p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0301"; repClass "LTR"; repEnd "3004"; repFamily "ERVL"; repLeft "2537"; repStart "-2710"; chr3 rmsk exon 34913401 34913972 3636 - . gene_id "ERVLB4_3p22.3b"; transcript_id "ERVLB4_3p22.3b"; locus "ERVLB4_3p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0301"; repClass "LTR"; repEnd "2536"; repFamily "ERVL"; repLeft "1965"; repStart "-3178"; ### ERVLE_3p22.3c ### chr3 rmsk gene 35041843 35043042 . - . gene_id "ERVLE_3p22.3c"; transcript_id "ERVLE_3p22.3c"; locus "ERVLE_3p22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0701"; model_cov "1195"; model_pct "21.1"; chr3 rmsk exon 35041843 35043042 2690 - . gene_id "ERVLE_3p22.3c"; transcript_id "ERVLE_3p22.3c"; locus "ERVLE_3p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0701"; repClass "LTR"; repEnd "5017"; repFamily "ERVL"; repLeft "3822"; repStart "-650"; ### HERVL_3p22.3b ### chr3 rmsk gene 35043080 35044731 . - . gene_id "HERVL_3p22.3b"; transcript_id "HERVL_3p22.3b"; locus "HERVL_3p22.3b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0248"; model_cov "606"; model_pct "10.7"; chr3 rmsk exon 35043080 35043582 466 - . gene_id "HERVL_3p22.3b"; transcript_id "HERVL_3p22.3b"; locus "HERVL_3p22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0248"; repClass "LTR"; repEnd "1687"; repFamily "ERVL"; repLeft "1183"; repStart "-3967"; chr3 rmsk exon 35044629 35044731 274 - . gene_id "HERVL_3p22.3b"; transcript_id "HERVL_3p22.3b"; locus "HERVL_3p22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0248"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "688"; repStart "-4864"; ### ERVL_3p22.3 ### chr3 rmsk gene 35083187 35085422 . - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0073"; model_cov "1543"; model_pct "26.8"; chr3 rmsk exon 35083187 35083225 236 - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0073"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr3 rmsk exon 35083285 35083364 229 - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0073"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "291"; repStart "-37"; chr3 rmsk exon 35083363 35083543 587 - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0073"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "28"; repStart "-196"; chr3 rmsk exon 35083544 35085080 7162 - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0073"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "4167"; repStart "-47"; chr3 rmsk exon 35085269 35085422 571 - . gene_id "ERVL_3p22.3"; transcript_id "ERVL_3p22.3"; locus "ERVL_3p22.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0073"; repClass "LTR"; repEnd "157"; repFamily "ERVL"; repLeft "1"; repStart "-257"; ### HERVL_3p22.3c ### chr3 rmsk gene 35141404 35143062 . - . gene_id "HERVL_3p22.3c"; transcript_id "HERVL_3p22.3c"; locus "HERVL_3p22.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0249"; model_cov "690"; model_pct "12.2"; chr3 rmsk exon 35141404 35141570 1146 - . gene_id "HERVL_3p22.3c"; transcript_id "HERVL_3p22.3c"; locus "HERVL_3p22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0249"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "229"; repStart "-49"; chr3 rmsk exon 35141571 35142262 5256 - . gene_id "HERVL_3p22.3c"; transcript_id "HERVL_3p22.3c"; locus "HERVL_3p22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0249"; repClass "LTR"; repEnd "3753"; repFamily "ERVL"; repLeft "3063"; repStart "-1901"; chr3 rmsk exon 35142666 35143062 2781 - . gene_id "HERVL_3p22.3c"; transcript_id "HERVL_3p22.3c"; locus "HERVL_3p22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0249"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### MER61_3p22.3b ### chr3 rmsk gene 35544835 35547203 . - . gene_id "MER61_3p22.3b"; transcript_id "MER61_3p22.3b"; locus "MER61_3p22.3b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0082"; model_cov "2099"; model_pct "40.2"; chr3 rmsk exon 35544835 35544998 750 - . gene_id "MER61_3p22.3b"; transcript_id "MER61_3p22.3b"; locus "MER61_3p22.3b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0082"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "86"; repStart "-115"; chr3 rmsk exon 35544998 35545045 287 - . gene_id "MER61_3p22.3b"; transcript_id "MER61_3p22.3b"; locus "MER61_3p22.3b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0082"; repClass "LTR"; repEnd "134"; repFamily "ERV1"; repLeft "87"; repStart "-293"; chr3 rmsk exon 35545046 35545082 13740 - . gene_id "MER61_3p22.3b"; transcript_id "MER61_3p22.3b"; locus "MER61_3p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0082"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5181"; repStart "0"; chr3 rmsk exon 35545153 35547203 13740 - . gene_id "MER61_3p22.3b"; transcript_id "MER61_3p22.3b"; locus "MER61_3p22.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0082"; repClass "LTR"; repEnd "5180"; repFamily "ERV1"; repLeft "3117"; repStart "-37"; ### ERV316A3_3p22.3a ### chr3 rmsk gene 35807616 35809676 . - . gene_id "ERV316A3_3p22.3a"; transcript_id "ERV316A3_3p22.3a"; locus "ERV316A3_3p22.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0455"; model_cov "1314"; model_pct "25.1"; chr3 rmsk exon 35807616 35808099 1378 - . gene_id "ERV316A3_3p22.3a"; transcript_id "ERV316A3_3p22.3a"; locus "ERV316A3_3p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0455"; repClass "LTR"; repEnd "2585"; repFamily "ERVL"; repLeft "1974"; repStart "-2641"; chr3 rmsk exon 35808946 35809676 1458 - . gene_id "ERV316A3_3p22.3a"; transcript_id "ERV316A3_3p22.3a"; locus "ERV316A3_3p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0455"; repClass "LTR"; repEnd "1748"; repFamily "ERVL"; repLeft "1045"; repStart "-3478"; ### HERVH_3p22.3d ### chr3 rmsk gene 35874404 35880025 . - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0234"; model_cov "5055"; model_pct "65.5"; chr3 rmsk exon 35874404 35874763 2142 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 35874764 35875142 2296 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 35875141 35875355 1315 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 35875363 35876019 4342 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "5143"; repFamily "ERV1"; repLeft "4488"; repStart "-2570"; chr3 rmsk exon 35876022 35876522 3431 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 35876513 35879664 20624 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr3 rmsk exon 35879667 35880025 2144 - . gene_id "HERVH_3p22.3d"; transcript_id "HERVH_3p22.3d"; locus "HERVH_3p22.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0234"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_3p22.3d ### chr3 rmsk gene 35891137 35892785 . + . gene_id "ERVLE_3p22.3d"; transcript_id "ERVLE_3p22.3d"; locus "ERVLE_3p22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0702"; model_cov "1471"; model_pct "26.0"; chr3 rmsk exon 35891137 35891291 467 + . gene_id "ERVLE_3p22.3d"; transcript_id "ERVLE_3p22.3d"; locus "ERVLE_3p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0702"; repClass "LTR"; repEnd "1443"; repFamily "ERVL"; repLeft "-4224"; repStart "1275"; chr3 rmsk exon 35891313 35892294 987 + . gene_id "ERVLE_3p22.3d"; transcript_id "ERVLE_3p22.3d"; locus "ERVLE_3p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0702"; repClass "LTR"; repEnd "2598"; repFamily "ERVL"; repLeft "-3069"; repStart "1481"; chr3 rmsk exon 35892592 35892785 987 + . gene_id "ERVLE_3p22.3d"; transcript_id "ERVLE_3p22.3d"; locus "ERVLE_3p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0702"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "-2961"; repStart "2520"; ### ERVLE_3p22.3e ### chr3 rmsk gene 36012327 36013319 . + . gene_id "ERVLE_3p22.3e"; transcript_id "ERVLE_3p22.3e"; locus "ERVLE_3p22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0703"; model_cov "958"; model_pct "16.9"; chr3 rmsk exon 36012327 36012887 1888 + . gene_id "ERVLE_3p22.3e"; transcript_id "ERVLE_3p22.3e"; locus "ERVLE_3p22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0703"; repClass "LTR"; repEnd "584"; repFamily "ERVL"; repLeft "-5083"; repStart "15"; chr3 rmsk exon 36012927 36012998 258 + . gene_id "ERVLE_3p22.3e"; transcript_id "ERVLE_3p22.3e"; locus "ERVLE_3p22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0703"; repClass "LTR"; repEnd "749"; repFamily "ERVL"; repLeft "-4918"; repStart "677"; chr3 rmsk exon 36013015 36013319 1088 + . gene_id "ERVLE_3p22.3e"; transcript_id "ERVLE_3p22.3e"; locus "ERVLE_3p22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0703"; repClass "LTR"; repEnd "1062"; repFamily "ERVL"; repLeft "-4605"; repStart "745"; ### ERV316A3_3p22.3b ### chr3 rmsk gene 36172450 36173324 . - . gene_id "ERV316A3_3p22.3b"; transcript_id "ERV316A3_3p22.3b"; locus "ERV316A3_3p22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0456"; model_cov "754"; model_pct "14.4"; chr3 rmsk exon 36172450 36172577 693 - . gene_id "ERV316A3_3p22.3b"; transcript_id "ERV316A3_3p22.3b"; locus "ERV316A3_3p22.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0456"; repClass "LTR"; repEnd "154"; repFamily "ERVL"; repLeft "23"; repStart "-297"; chr3 rmsk exon 36172587 36173324 2085 - . gene_id "ERV316A3_3p22.3b"; transcript_id "ERV316A3_3p22.3b"; locus "ERV316A3_3p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0456"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4472"; repStart "0"; ### ERVLE_3p22.3f ### chr3 rmsk gene 36327449 36328608 . - . gene_id "ERVLE_3p22.3f"; transcript_id "ERVLE_3p22.3f"; locus "ERVLE_3p22.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0704"; model_cov "1177"; model_pct "20.8"; chr3 rmsk exon 36327449 36328475 1744 - . gene_id "ERVLE_3p22.3f"; transcript_id "ERVLE_3p22.3f"; locus "ERVLE_3p22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0704"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "4281"; repStart "-330"; chr3 rmsk exon 36328495 36328608 299 - . gene_id "ERVLE_3p22.3f"; transcript_id "ERVLE_3p22.3f"; locus "ERVLE_3p22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0704"; repClass "LTR"; repEnd "3918"; repFamily "ERVL"; repLeft "3797"; repStart "-1749"; ### MER4B_3p22.3 ### chr3 rmsk gene 36362755 36369039 . + . gene_id "MER4B_3p22.3"; transcript_id "MER4B_3p22.3"; locus "MER4B_3p22.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0084"; model_cov "4415"; model_pct "65.3"; chr3 rmsk exon 36362755 36365280 10489 + . gene_id "MER4B_3p22.3"; transcript_id "MER4B_3p22.3"; locus "MER4B_3p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0084"; repClass "LTR"; repEnd "4551"; repFamily "ERV1"; repLeft "-2207"; repStart "1851"; chr3 rmsk exon 36365575 36366134 10489 + . gene_id "MER4B_3p22.3"; transcript_id "MER4B_3p22.3"; locus "MER4B_3p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0084"; repClass "LTR"; repEnd "5090"; repFamily "ERV1"; repLeft "-1668"; repStart "4552"; chr3 rmsk exon 36366744 36367525 10489 + . gene_id "MER4B_3p22.3"; transcript_id "MER4B_3p22.3"; locus "MER4B_3p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0084"; repClass "LTR"; repEnd "5956"; repFamily "ERV1"; repLeft "-802"; repStart "5263"; chr3 rmsk exon 36368556 36369039 944 + . gene_id "MER4B_3p22.3"; transcript_id "MER4B_3p22.3"; locus "MER4B_3p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0084"; repClass "LTR"; repEnd "6075"; repFamily "ERV1"; repLeft "-683"; repStart "5591"; ### HERVH_3p22.2a ### chr3 rmsk gene 37205260 37209862 . + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0235"; model_cov "3622"; model_pct "47.0"; chr3 rmsk exon 37205260 37205400 1523 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "347"; repFamily "ERV1"; repLeft "-117"; repStart "203"; chr3 rmsk exon 37205708 37205841 1523 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "348"; chr3 rmsk exon 37205842 37206305 2564 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "-7255"; repStart "1"; chr3 rmsk exon 37206367 37206680 447 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "-7069"; repStart "458"; chr3 rmsk exon 37206675 37207503 5063 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2189"; chr3 rmsk exon 37207483 37207942 3057 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "-4112"; repStart "3140"; chr3 rmsk exon 37207934 37208711 3620 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4882"; chr3 rmsk exon 37208703 37208964 1658 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr3 rmsk exon 37208958 37209514 3562 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr3 rmsk exon 37209515 37209862 2169 + . gene_id "HERVH_3p22.2a"; transcript_id "HERVH_3p22.2a"; locus "HERVH_3p22.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0235"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3p22.2b ### chr3 rmsk gene 38070496 38083728 . - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_0236"; model_cov "5036"; model_pct "65.3"; chr3 rmsk exon 38070496 38070934 3359 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 38070935 38071359 2867 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7289"; repStart "0"; chr3 rmsk exon 38071359 38076287 15848 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "5754"; repFamily "ERV1"; repLeft "1142"; repStart "-1959"; chr3 rmsk exon 38076290 38076739 3566 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 38076740 38077118 2279 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 38077118 38077333 1365 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 38077335 38077967 3811 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 38077970 38078472 3275 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 38078472 38078610 834 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 38078610 38080804 15205 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "787"; repStart "-4726"; chr3 rmsk exon 38082485 38083174 3994 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "83"; repStart "-6914"; chr3 rmsk exon 38083177 38083728 2948 - . gene_id "HERVH_3p22.2b"; transcript_id "HERVH_3p22.2b"; locus "HERVH_3p22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0236"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_3p22.2 ### chr3 rmsk gene 38289418 38297325 . - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0058"; model_cov "6346"; model_pct "73.6"; chr3 rmsk exon 38289418 38290178 6015 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 38290179 38290470 2432 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 38290461 38290499 262 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr3 rmsk exon 38290493 38295713 44300 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "709"; repStart "-2607"; chr3 rmsk exon 38295836 38296544 6148 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "708"; repFamily "ERV1"; repLeft "1"; repStart "-7918"; chr3 rmsk exon 38296545 38297325 6262 - . gene_id "HERVW_3p22.2"; transcript_id "HERVW_3p22.2"; locus "HERVW_3p22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0058"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_3p22.2 ### chr3 rmsk gene 38420760 38427256 . + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0036"; model_cov "4793"; model_pct "79.6"; chr3 rmsk exon 38420760 38421254 3855 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 38421255 38422158 3656 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "-5342"; repStart "1"; chr3 rmsk exon 38422155 38423082 25284 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "2554"; repFamily "ERVK"; repLeft "-3467"; repStart "1638"; chr3 rmsk exon 38423372 38425809 25284 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "4964"; repFamily "ERVK"; repLeft "-1057"; repStart "2555"; chr3 rmsk exon 38425896 38426626 1984 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "5864"; repFamily "ERVK"; repLeft "-157"; repStart "5181"; chr3 rmsk exon 38426649 38426758 646 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5914"; chr3 rmsk exon 38426760 38427256 3880 + . gene_id "HML3_3p22.2"; transcript_id "HML3_3p22.2"; locus "HML3_3p22.2"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0036"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### ERVLE_3p22.2a ### chr3 rmsk gene 38669189 38670178 . - . gene_id "ERVLE_3p22.2a"; transcript_id "ERVLE_3p22.2a"; locus "ERVLE_3p22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0707"; model_cov "782"; model_pct "13.8"; chr3 rmsk exon 38669189 38669912 2836 - . gene_id "ERVLE_3p22.2a"; transcript_id "ERVLE_3p22.2a"; locus "ERVLE_3p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0707"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "2130"; repStart "-2811"; chr3 rmsk exon 38670125 38670178 2836 - . gene_id "ERVLE_3p22.2a"; transcript_id "ERVLE_3p22.2a"; locus "ERVLE_3p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0707"; repClass "LTR"; repEnd "2129"; repFamily "ERVL"; repLeft "2073"; repStart "-3538"; ### ERVLE_3p22.2b ### chr3 rmsk gene 39013937 39015565 . - . gene_id "ERVLE_3p22.2b"; transcript_id "ERVLE_3p22.2b"; locus "ERVLE_3p22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0709"; model_cov "1260"; model_pct "22.2"; chr3 rmsk exon 39013937 39014262 731 - . gene_id "ERVLE_3p22.2b"; transcript_id "ERVLE_3p22.2b"; locus "ERVLE_3p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0709"; repClass "LTR"; repEnd "5291"; repFamily "ERVL"; repLeft "4977"; repStart "-376"; chr3 rmsk exon 39014284 39015029 2735 - . gene_id "ERVLE_3p22.2b"; transcript_id "ERVLE_3p22.2b"; locus "ERVLE_3p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0709"; repClass "LTR"; repEnd "4837"; repFamily "ERVL"; repLeft "4061"; repStart "-830"; chr3 rmsk exon 39015389 39015565 2735 - . gene_id "ERVLE_3p22.2b"; transcript_id "ERVLE_3p22.2b"; locus "ERVLE_3p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0709"; repClass "LTR"; repEnd "4060"; repFamily "ERVL"; repLeft "3890"; repStart "-1607"; ### ERVLE_3p22.2c ### chr3 rmsk gene 39049134 39050019 . - . gene_id "ERVLE_3p22.2c"; transcript_id "ERVLE_3p22.2c"; locus "ERVLE_3p22.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0711"; model_cov "971"; model_pct "17.1"; chr3 rmsk exon 39049134 39049581 1164 - . gene_id "ERVLE_3p22.2c"; transcript_id "ERVLE_3p22.2c"; locus "ERVLE_3p22.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0711"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "4198"; repStart "-1009"; chr3 rmsk exon 39049618 39050019 656 - . gene_id "ERVLE_3p22.2c"; transcript_id "ERVLE_3p22.2c"; locus "ERVLE_3p22.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0711"; repClass "LTR"; repEnd "4100"; repFamily "ERVL"; repLeft "3589"; repStart "-1567"; ### HERVH_3p22.1a ### chr3 rmsk gene 39577832 39583618 . - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0238"; model_cov "4904"; model_pct "63.6"; chr3 rmsk exon 39577832 39578241 2872 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 39578242 39578618 2401 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 39578617 39578833 1461 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 39578838 39579494 4356 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr3 rmsk exon 39579497 39579999 3498 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 39579990 39580134 829 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 39580130 39583206 16117 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "1"; repStart "-4727"; chr3 rmsk exon 39583209 39583618 2939 - . gene_id "HERVH_3p22.1a"; transcript_id "HERVH_3p22.1a"; locus "HERVH_3p22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0238"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_3p22.1 ### chr3 rmsk gene 39658378 39660074 . + . gene_id "HERVW_3p22.1"; transcript_id "HERVW_3p22.1"; locus "HERVW_3p22.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0059"; model_cov "1378"; model_pct "16.0"; chr3 rmsk exon 39658378 39659437 8408 + . gene_id "HERVW_3p22.1"; transcript_id "HERVW_3p22.1"; locus "HERVW_3p22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0059"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4969"; chr3 rmsk exon 39659431 39659469 285 + . gene_id "HERVW_3p22.1"; transcript_id "HERVW_3p22.1"; locus "HERVW_3p22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0059"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 39659460 39659750 2367 + . gene_id "HERVW_3p22.1"; transcript_id "HERVW_3p22.1"; locus "HERVW_3p22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0059"; repClass "LTR"; repEnd "8625"; repFamily "ERV1"; repLeft "-1"; repStart "8335"; chr3 rmsk exon 39659752 39660074 2297 + . gene_id "HERVW_3p22.1"; transcript_id "HERVW_3p22.1"; locus "HERVW_3p22.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0059"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_3p22.1a ### chr3 rmsk gene 39670157 39670791 . - . gene_id "ERVLE_3p22.1a"; transcript_id "ERVLE_3p22.1a"; locus "ERVLE_3p22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0712"; model_cov "818"; model_pct "14.4"; chr3 rmsk exon 39670157 39670273 305 - . gene_id "ERVLE_3p22.1a"; transcript_id "ERVLE_3p22.1a"; locus "ERVLE_3p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0712"; repClass "LTR"; repEnd "5042"; repFamily "ERVL"; repLeft "4919"; repStart "-625"; chr3 rmsk exon 39670274 39670791 789 - . gene_id "ERVLE_3p22.1a"; transcript_id "ERVLE_3p22.1a"; locus "ERVLE_3p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0712"; repClass "LTR"; repEnd "4860"; repFamily "ERVL"; repLeft "4165"; repStart "-807"; ### ERVLE_3p22.1b ### chr3 rmsk gene 39843529 39845079 . - . gene_id "ERVLE_3p22.1b"; transcript_id "ERVLE_3p22.1b"; locus "ERVLE_3p22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0713"; model_cov "1717"; model_pct "30.3"; chr3 rmsk exon 39843529 39845079 3883 - . gene_id "ERVLE_3p22.1b"; transcript_id "ERVLE_3p22.1b"; locus "ERVLE_3p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0713"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "2835"; repStart "-1115"; ### MER101_3p22.1a ### chr3 rmsk gene 40264428 40265037 . + . gene_id "MER101_3p22.1a"; transcript_id "MER101_3p22.1a"; locus "MER101_3p22.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0088"; model_cov "993"; model_pct "15.0"; chr3 rmsk exon 40264428 40265037 1897 + . gene_id "MER101_3p22.1a"; transcript_id "MER101_3p22.1a"; locus "MER101_3p22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0088"; repClass "LTR"; repEnd "4179"; repFamily "ERV1"; repLeft "-2460"; repStart "3186"; ### MER41_3p22.1a ### chr3 rmsk gene 40343324 40352457 . + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0084"; model_cov "5379"; model_pct "90.5"; chr3 rmsk exon 40343324 40343364 1007 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0084"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "-115"; repStart "481"; chr3 rmsk exon 40343674 40343800 1007 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0084"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-1"; repStart "520"; chr3 rmsk exon 40343802 40343994 4081 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "-5753"; repStart "1"; chr3 rmsk exon 40344281 40344734 4081 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "-5308"; repStart "194"; chr3 rmsk exon 40344724 40345415 3912 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "1080"; chr3 rmsk exon 40345403 40345486 553 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "968"; repFamily "ERV1"; repLeft "-4978"; repStart "885"; chr3 rmsk exon 40347616 40350180 23511 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "4534"; repFamily "ERV1"; repLeft "-1412"; repStart "1980"; chr3 rmsk exon 40350468 40351903 23511 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0084"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4535"; chr3 rmsk exon 40351904 40352457 3777 + . gene_id "MER41_3p22.1a"; transcript_id "MER41_3p22.1a"; locus "MER41_3p22.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0084"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-81"; repStart "1"; ### MER41_3p22.1b ### chr3 rmsk gene 40552408 40556384 . - . gene_id "MER41_3p22.1b"; transcript_id "MER41_3p22.1b"; locus "MER41_3p22.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0085"; model_cov "3733"; model_pct "62.8"; chr3 rmsk exon 40552408 40553201 2305 - . gene_id "MER41_3p22.1b"; transcript_id "MER41_3p22.1b"; locus "MER41_3p22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0085"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4909"; repStart "0"; chr3 rmsk exon 40553854 40554466 9753 - . gene_id "MER41_3p22.1b"; transcript_id "MER41_3p22.1b"; locus "MER41_3p22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0085"; repClass "LTR"; repEnd "5028"; repFamily "ERV1"; repLeft "4413"; repStart "-918"; chr3 rmsk exon 40554761 40556384 9753 - . gene_id "MER41_3p22.1b"; transcript_id "MER41_3p22.1b"; locus "MER41_3p22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0085"; repClass "LTR"; repEnd "4412"; repFamily "ERV1"; repLeft "2331"; repStart "-1534"; ### HERVH_3p22.1b ### chr3 rmsk gene 40560896 40566678 . + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0239"; model_cov "5061"; model_pct "65.6"; chr3 rmsk exon 40560896 40561296 2444 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 40561299 40564521 19995 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr3 rmsk exon 40564512 40565014 3661 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 40565017 40565676 4501 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 40565678 40565894 1454 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 40565893 40566261 2274 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 40566272 40566678 2549 + . gene_id "HERVH_3p22.1b"; transcript_id "HERVH_3p22.1b"; locus "HERVH_3p22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0239"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_3p22.1a ### chr3 rmsk gene 41737789 41739828 . + . gene_id "ERVLB4_3p22.1a"; transcript_id "ERVLB4_3p22.1a"; locus "ERVLB4_3p22.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0304"; model_cov "2144"; model_pct "37.5"; chr3 rmsk exon 41737789 41739828 3995 + . gene_id "ERVLB4_3p22.1a"; transcript_id "ERVLB4_3p22.1a"; locus "ERVLB4_3p22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0304"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "-1554"; repStart "2016"; ### ERVLE_3p22.1c ### chr3 rmsk gene 41984938 41986921 . + . gene_id "ERVLE_3p22.1c"; transcript_id "ERVLE_3p22.1c"; locus "ERVLE_3p22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0715"; model_cov "1337"; model_pct "23.6"; chr3 rmsk exon 41984938 41985637 2151 + . gene_id "ERVLE_3p22.1c"; transcript_id "ERVLE_3p22.1c"; locus "ERVLE_3p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0715"; repClass "LTR"; repEnd "2997"; repFamily "ERVL"; repLeft "-2670"; repStart "2284"; chr3 rmsk exon 41985952 41986188 2151 + . gene_id "ERVLE_3p22.1c"; transcript_id "ERVLE_3p22.1c"; locus "ERVLE_3p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0715"; repClass "LTR"; repEnd "3239"; repFamily "ERVL"; repLeft "-2428"; repStart "2998"; chr3 rmsk exon 41986554 41986702 438 + . gene_id "ERVLE_3p22.1c"; transcript_id "ERVLE_3p22.1c"; locus "ERVLE_3p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0715"; repClass "LTR"; repEnd "3404"; repFamily "ERVL"; repLeft "-2263"; repStart "3241"; chr3 rmsk exon 41986702 41986921 672 + . gene_id "ERVLE_3p22.1c"; transcript_id "ERVLE_3p22.1c"; locus "ERVLE_3p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0715"; repClass "LTR"; repEnd "3640"; repFamily "ERVL"; repLeft "-2027"; repStart "3420"; ### MER101_3p22.1b ### chr3 rmsk gene 42310574 42311458 . - . gene_id "MER101_3p22.1b"; transcript_id "MER101_3p22.1b"; locus "MER101_3p22.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0089"; model_cov "1051"; model_pct "15.8"; chr3 rmsk exon 42310574 42311458 3193 - . gene_id "MER101_3p22.1b"; transcript_id "MER101_3p22.1b"; locus "MER101_3p22.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0089"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3551"; repStart "-2037"; ### MER101_3p22.1c ### chr3 rmsk gene 42311794 42315063 . - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0090"; model_cov "2529"; model_pct "38.1"; chr3 rmsk exon 42311794 42312028 3193 - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0090"; repClass "LTR"; repEnd "5253"; repFamily "ERV1"; repLeft "5000"; repStart "-1386"; chr3 rmsk exon 42312333 42312851 4894 - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0090"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "3439"; repStart "-2723"; chr3 rmsk exon 42313152 42313803 4894 - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0090"; repClass "LTR"; repEnd "3438"; repFamily "ERV1"; repLeft "2782"; repStart "-3201"; chr3 rmsk exon 42313931 42314172 2346 - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0090"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "2547"; repStart "-3874"; chr3 rmsk exon 42314472 42315063 2346 - . gene_id "MER101_3p22.1c"; transcript_id "MER101_3p22.1c"; locus "MER101_3p22.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0090"; repClass "LTR"; repEnd "2546"; repFamily "ERV1"; repLeft "1621"; repStart "-4093"; ### ERVLB4_3p22.1b ### chr3 rmsk gene 42389508 42390732 . + . gene_id "ERVLB4_3p22.1b"; transcript_id "ERVLB4_3p22.1b"; locus "ERVLB4_3p22.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0306"; model_cov "1237"; model_pct "21.6"; chr3 rmsk exon 42389508 42390430 2854 + . gene_id "ERVLB4_3p22.1b"; transcript_id "ERVLB4_3p22.1b"; locus "ERVLB4_3p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0306"; repClass "LTR"; repEnd "4190"; repFamily "ERVL"; repLeft "-1524"; repStart "3190"; chr3 rmsk exon 42390429 42390543 580 + . gene_id "ERVLB4_3p22.1b"; transcript_id "ERVLB4_3p22.1b"; locus "ERVLB4_3p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0306"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "-1392"; repStart "4196"; chr3 rmsk exon 42390639 42390732 338 + . gene_id "ERVLB4_3p22.1b"; transcript_id "ERVLB4_3p22.1b"; locus "ERVLB4_3p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0306"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-1246"; repStart "4357"; ### ERVLE_3p22.1d ### chr3 rmsk gene 42680198 42680875 . - . gene_id "ERVLE_3p22.1d"; transcript_id "ERVLE_3p22.1d"; locus "ERVLE_3p22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0717"; model_cov "719"; model_pct "12.7"; chr3 rmsk exon 42680198 42680352 527 - . gene_id "ERVLE_3p22.1d"; transcript_id "ERVLE_3p22.1d"; locus "ERVLE_3p22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0717"; repClass "LTR"; repEnd "4467"; repFamily "ERVL"; repLeft "4309"; repStart "-1200"; chr3 rmsk exon 42680344 42680875 893 - . gene_id "ERVLE_3p22.1d"; transcript_id "ERVLE_3p22.1d"; locus "ERVLE_3p22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0717"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "1053"; repStart "-4053"; ### MER41_3p22.1c ### chr3 rmsk gene 42718040 42722791 . + . gene_id "MER41_3p22.1c"; transcript_id "MER41_3p22.1c"; locus "MER41_3p22.1c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0086"; model_cov "1138"; model_pct "19.1"; chr3 rmsk exon 42718040 42718591 4373 + . gene_id "MER41_3p22.1c"; transcript_id "MER41_3p22.1c"; locus "MER41_3p22.1c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0086"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 42718678 42719381 4032 + . gene_id "MER41_3p22.1c"; transcript_id "MER41_3p22.1c"; locus "MER41_3p22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0086"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5337"; repStart "1"; chr3 rmsk exon 42721833 42722349 4179 + . gene_id "MER41_3p22.1c"; transcript_id "MER41_3p22.1c"; locus "MER41_3p22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0086"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5414"; chr3 rmsk exon 42722351 42722791 4389 + . gene_id "MER41_3p22.1c"; transcript_id "MER41_3p22.1c"; locus "MER41_3p22.1c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0086"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-113"; repStart "1"; ### PABLA_3p22.1 ### chr3 rmsk gene 42719437 42721839 . + . gene_id "PABLA_3p22.1"; transcript_id "PABLA_3p22.1"; locus "PABLA_3p22.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0023"; model_cov "2356"; model_pct "47.0"; chr3 rmsk exon 42719437 42721839 9002 + . gene_id "PABLA_3p22.1"; transcript_id "PABLA_3p22.1"; locus "PABLA_3p22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0023"; repClass "LTR"; repEnd "2120"; repFamily "ERV1"; repLeft "-2895"; repStart "-236"; ### HERVFRD_3p22.1 ### chr3 rmsk gene 42896033 42900433 . + . gene_id "HERVFRD_3p22.1"; transcript_id "HERVFRD_3p22.1"; locus "HERVFRD_3p22.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0033"; model_cov "3268"; model_pct "45.4"; chr3 rmsk exon 42896033 42898074 6279 + . gene_id "HERVFRD_3p22.1"; transcript_id "HERVFRD_3p22.1"; locus "HERVFRD_3p22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0033"; repClass "LTR"; repEnd "2737"; repFamily "ERV1"; repLeft "-4468"; repStart "890"; chr3 rmsk exon 42898071 42899469 1467 + . gene_id "HERVFRD_3p22.1"; transcript_id "HERVFRD_3p22.1"; locus "HERVFRD_3p22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0033"; repClass "LTR"; repEnd "5371"; repFamily "ERV1"; repLeft "-1834"; repStart "3950"; chr3 rmsk exon 42899487 42899651 3095 + . gene_id "HERVFRD_3p22.1"; transcript_id "HERVFRD_3p22.1"; locus "HERVFRD_3p22.1"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0033"; repClass "LTR"; repEnd "286"; repFamily "ERV1"; repLeft "-496"; repStart "122"; chr3 rmsk exon 42899961 42900433 3095 + . gene_id "HERVFRD_3p22.1"; transcript_id "HERVFRD_3p22.1"; locus "HERVFRD_3p22.1"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0033"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "0"; repStart "287"; ### LTR25_3p22.1 ### chr3 rmsk gene 42918608 42924975 . - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0022"; model_cov "3757"; model_pct "52.3"; chr3 rmsk exon 42918608 42920639 13914 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5231"; repStart "-1"; chr3 rmsk exon 42920934 42921534 13914 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "5230"; repFamily "ERV1"; repLeft "4639"; repStart "-1958"; chr3 rmsk exon 42922487 42923360 5291 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "4652"; repFamily "ERV1"; repLeft "3800"; repStart "-2536"; chr3 rmsk exon 42923642 42923802 5291 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "3799"; repFamily "ERV1"; repLeft "3752"; repStart "-3389"; chr3 rmsk exon 42923795 42924023 1557 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "2209"; repFamily "ERV1"; repLeft "1983"; repStart "-4979"; chr3 rmsk exon 42924893 42924975 256 - . gene_id "LTR25_3p22.1"; transcript_id "LTR25_3p22.1"; locus "LTR25_3p22.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0022"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "434"; repStart "-6669"; ### MER61_3p22.1 ### chr3 rmsk gene 42924026 42924859 . - . gene_id "MER61_3p22.1"; transcript_id "MER61_3p22.1"; locus "MER61_3p22.1"; category "internal"; intModel "MER61-int"; locid "MER61-int_0083"; model_cov "681"; model_pct "13.1"; chr3 rmsk exon 42924026 42924299 1318 - . gene_id "MER61_3p22.1"; transcript_id "MER61_3p22.1"; locus "MER61_3p22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0083"; repClass "LTR"; repEnd "4575"; repFamily "ERV1"; repLeft "4301"; repStart "-642"; chr3 rmsk exon 42924306 42924550 1016 - . gene_id "MER61_3p22.1"; transcript_id "MER61_3p22.1"; locus "MER61_3p22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0083"; repClass "LTR"; repEnd "4125"; repFamily "ERV1"; repLeft "3991"; repStart "-1092"; chr3 rmsk exon 42924555 42924859 1167 - . gene_id "MER61_3p22.1"; transcript_id "MER61_3p22.1"; locus "MER61_3p22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0083"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "181"; repStart "-4763"; ### ERVLE_3p22.1e ### chr3 rmsk gene 43145607 43146425 . + . gene_id "ERVLE_3p22.1e"; transcript_id "ERVLE_3p22.1e"; locus "ERVLE_3p22.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0718"; model_cov "842"; model_pct "14.9"; chr3 rmsk exon 43145607 43146425 2885 + . gene_id "ERVLE_3p22.1e"; transcript_id "ERVLE_3p22.1e"; locus "ERVLE_3p22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0718"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "-763"; repStart "4062"; ### HERVH_3p21.31a ### chr3 rmsk gene 44344658 44351310 . - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; category "unknown"; intModel "HERVH-int"; locid "HERVH-int_0240"; model_cov "5392"; model_pct "69.9"; chr3 rmsk exon 44344658 44345026 2004 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 44345027 44345577 3536 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 44345571 44345984 2316 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5600"; repStart "-1697"; chr3 rmsk exon 44345987 44346660 4497 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "5148"; repFamily "ERV1"; repLeft "4466"; repStart "-2565"; chr3 rmsk exon 44346649 44350026 17075 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "3689"; repFamily "ERV1"; repLeft "1"; repStart "-4024"; chr3 rmsk exon 44350027 44350393 2266 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 44351260 44351310 328 - . gene_id "HERVH_3p21.31a"; transcript_id "HERVH_3p21.31a"; locus "HERVH_3p21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0240"; repClass "LTR"; repEnd "101"; repFamily "ERV1"; repLeft "51"; repStart "-7612"; ### ERVLB4_3p21.31a ### chr3 rmsk gene 44434466 44439444 . - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0307"; model_cov "2097"; model_pct "36.7"; chr3 rmsk exon 44434466 44434808 6290 - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0307"; repClass "LTR"; repEnd "2826"; repFamily "ERVL"; repLeft "2505"; repStart "-2888"; chr3 rmsk exon 44435372 44436636 6290 - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0307"; repClass "LTR"; repEnd "2504"; repFamily "ERVL"; repLeft "1162"; repStart "-3210"; chr3 rmsk exon 44436765 44436907 437 - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0307"; repClass "LTR"; repEnd "1124"; repFamily "ERVL"; repLeft "892"; repStart "-4590"; chr3 rmsk exon 44438073 44438159 365 - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0307"; repClass "LTR"; repEnd "966"; repFamily "ERVL"; repLeft "869"; repStart "-4748"; chr3 rmsk exon 44439339 44439444 404 - . gene_id "ERVLB4_3p21.31a"; transcript_id "ERVLB4_3p21.31a"; locus "ERVLB4_3p21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0307"; repClass "LTR"; repEnd "824"; repFamily "ERVL"; repLeft "719"; repStart "-4890"; ### HUERSP1_3p21.31 ### chr3 rmsk gene 44460179 44468961 . + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0046"; model_cov "6255"; model_pct "99.9"; chr3 rmsk exon 44460179 44460849 5127 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 44460850 44463001 44295 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "2193"; repFamily "ERV1"; repLeft "-4070"; repStart "1"; chr3 rmsk exon 44463336 44463845 44295 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "2711"; repFamily "ERV1"; repLeft "-3552"; repStart "2194"; chr3 rmsk exon 44464153 44464794 44295 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "3364"; repFamily "ERV1"; repLeft "-2899"; repStart "2712"; chr3 rmsk exon 44465089 44465630 44295 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "3906"; repFamily "ERV1"; repLeft "-2357"; repStart "3365"; chr3 rmsk exon 44465944 44468257 44295 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "6260"; repFamily "ERV1"; repLeft "-3"; repStart "3907"; chr3 rmsk exon 44468259 44468961 5255 + . gene_id "HUERSP1_3p21.31"; transcript_id "HUERSP1_3p21.31"; locus "HUERSP1_3p21.31"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0046"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_3p21.31 ### chr3 rmsk gene 44543585 44550965 . - . gene_id "HERV9_3p21.31"; transcript_id "HERV9_3p21.31"; locus "HERV9_3p21.31"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0032"; model_cov "5320"; model_pct "63.1"; chr3 rmsk exon 44543585 44544053 3184 - . gene_id "HERV9_3p21.31"; transcript_id "HERV9_3p21.31"; locus "HERV9_3p21.31"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0032"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "1"; repStart "-234"; chr3 rmsk exon 44544054 44550451 39782 - . gene_id "HERV9_3p21.31"; transcript_id "HERV9_3p21.31"; locus "HERV9_3p21.31"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0032"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "3116"; repStart "0"; chr3 rmsk exon 44550470 44550965 3172 - . gene_id "HERV9_3p21.31"; transcript_id "HERV9_3p21.31"; locus "HERV9_3p21.31"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0032"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "1"; repStart "-231"; ### MER61_3p21.31 ### chr3 rmsk gene 44768308 44774152 . - . gene_id "MER61_3p21.31"; transcript_id "MER61_3p21.31"; locus "MER61_3p21.31"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0084"; model_cov "5822"; model_pct "100.0"; chr3 rmsk exon 44768308 44768639 1181 - . gene_id "MER61_3p21.31"; transcript_id "MER61_3p21.31"; locus "MER61_3p21.31"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0084"; repClass "LTR"; repEnd "242"; repFamily "ERV1"; repLeft "-123"; repStart "-259"; chr3 rmsk exon 44768648 44773463 17167 - . gene_id "MER61_3p21.31"; transcript_id "MER61_3p21.31"; locus "MER61_3p21.31"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0084"; repClass "LTR"; repEnd "3112"; repFamily "ERV1"; repLeft "-2710"; repStart "-2105"; chr3 rmsk exon 44773776 44774152 2424 - . gene_id "MER61_3p21.31"; transcript_id "MER61_3p21.31"; locus "MER61_3p21.31"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0084"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "114"; repStart "0"; ### HERVH_3p21.31b ### chr3 rmsk gene 44855024 44859382 . - . gene_id "HERVH_3p21.31b"; transcript_id "HERVH_3p21.31b"; locus "HERVH_3p21.31b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0241"; model_cov "4243"; model_pct "55.0"; chr3 rmsk exon 44855024 44855481 3712 - . gene_id "HERVH_3p21.31b"; transcript_id "HERVH_3p21.31b"; locus "HERVH_3p21.31b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0241"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr3 rmsk exon 44855483 44855931 2568 - . gene_id "HERVH_3p21.31b"; transcript_id "HERVH_3p21.31b"; locus "HERVH_3p21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0241"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr3 rmsk exon 44855918 44859382 15478 - . gene_id "HERVH_3p21.31b"; transcript_id "HERVH_3p21.31b"; locus "HERVH_3p21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0241"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "2624"; repStart "-1290"; ### ERVLE_3p21.31a ### chr3 rmsk gene 45014519 45016480 . + . gene_id "ERVLE_3p21.31a"; transcript_id "ERVLE_3p21.31a"; locus "ERVLE_3p21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0721"; model_cov "2120"; model_pct "37.4"; chr3 rmsk exon 45014519 45014776 284 + . gene_id "ERVLE_3p21.31a"; transcript_id "ERVLE_3p21.31a"; locus "ERVLE_3p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0721"; repClass "LTR"; repEnd "2528"; repFamily "ERVL"; repLeft "-3139"; repStart "2259"; chr3 rmsk exon 45014804 45016480 2322 + . gene_id "ERVLE_3p21.31a"; transcript_id "ERVLE_3p21.31a"; locus "ERVLE_3p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0721"; repClass "LTR"; repEnd "3644"; repFamily "ERVL"; repLeft "-2023"; repStart "1793"; ### ERV316A3_3p21.31a ### chr3 rmsk gene 45172295 45175673 . - . gene_id "ERV316A3_3p21.31a"; transcript_id "ERV316A3_3p21.31a"; locus "ERV316A3_3p21.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0457"; model_cov "2905"; model_pct "55.6"; chr3 rmsk exon 45172295 45173951 4835 - . gene_id "ERV316A3_3p21.31a"; transcript_id "ERV316A3_3p21.31a"; locus "ERV316A3_3p21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0457"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "3165"; repStart "-348"; chr3 rmsk exon 45174456 45175488 4835 - . gene_id "ERV316A3_3p21.31a"; transcript_id "ERV316A3_3p21.31a"; locus "ERV316A3_3p21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0457"; repClass "LTR"; repEnd "3164"; repFamily "ERVL"; repLeft "2145"; repStart "-2062"; chr3 rmsk exon 45175502 45175673 464 - . gene_id "ERV316A3_3p21.31a"; transcript_id "ERV316A3_3p21.31a"; locus "ERV316A3_3p21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0457"; repClass "LTR"; repEnd "2064"; repFamily "ERVL"; repLeft "1891"; repStart "-3162"; ### ERV316A3_3p21.31b ### chr3 rmsk gene 45189267 45190484 . - . gene_id "ERV316A3_3p21.31b"; transcript_id "ERV316A3_3p21.31b"; locus "ERV316A3_3p21.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0458"; model_cov "925"; model_pct "17.7"; chr3 rmsk exon 45189267 45189551 2596 - . gene_id "ERV316A3_3p21.31b"; transcript_id "ERV316A3_3p21.31b"; locus "ERV316A3_3p21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0458"; repClass "LTR"; repEnd "4107"; repFamily "ERVL"; repLeft "3821"; repStart "-1119"; chr3 rmsk exon 45189849 45190484 2596 - . gene_id "ERV316A3_3p21.31b"; transcript_id "ERV316A3_3p21.31b"; locus "ERV316A3_3p21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0458"; repClass "LTR"; repEnd "3820"; repFamily "ERVL"; repLeft "3181"; repStart "-1406"; ### ERVLE_3p21.31b ### chr3 rmsk gene 45274830 45276248 . - . gene_id "ERVLE_3p21.31b"; transcript_id "ERVLE_3p21.31b"; locus "ERVLE_3p21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0722"; model_cov "733"; model_pct "12.9"; chr3 rmsk exon 45274830 45275060 583 - . gene_id "ERVLE_3p21.31b"; transcript_id "ERVLE_3p21.31b"; locus "ERVLE_3p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0722"; repClass "LTR"; repEnd "5291"; repFamily "ERVL"; repLeft "5066"; repStart "-376"; chr3 rmsk exon 45275781 45276248 688 - . gene_id "ERVLE_3p21.31b"; transcript_id "ERVLE_3p21.31b"; locus "ERVLE_3p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0722"; repClass "LTR"; repEnd "4759"; repFamily "ERVL"; repLeft "4251"; repStart "-908"; ### ERVLE_3p21.31c ### chr3 rmsk gene 45282981 45287440 . - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0723"; model_cov "3732"; model_pct "65.9"; chr3 rmsk exon 45282981 45284241 5361 - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0723"; repClass "LTR"; repEnd "4239"; repFamily "ERVL"; repLeft "2889"; repStart "-1428"; chr3 rmsk exon 45284560 45285620 5361 - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0723"; repClass "LTR"; repEnd "2888"; repFamily "ERVL"; repLeft "1802"; repStart "-2779"; chr3 rmsk exon 45285940 45286399 1030 - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0723"; repClass "LTR"; repEnd "1632"; repFamily "ERVL"; repLeft "1172"; repStart "-4035"; chr3 rmsk exon 45286633 45287121 621 - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0723"; repClass "LTR"; repEnd "1115"; repFamily "ERVL"; repLeft "531"; repStart "-4552"; chr3 rmsk exon 45287190 45287440 439 - . gene_id "ERVLE_3p21.31c"; transcript_id "ERVLE_3p21.31c"; locus "ERVLE_3p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0723"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "4"; repStart "-5411"; ### ERV316A3_3p21.31c ### chr3 rmsk gene 45818665 45822568 . + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0459"; model_cov "2911"; model_pct "55.7"; chr3 rmsk exon 45818665 45818847 531 + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0459"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "297"; chr3 rmsk exon 45819068 45820791 1790 + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0459"; repClass "LTR"; repEnd "2474"; repFamily "ERVL"; repLeft "-2752"; repStart "579"; chr3 rmsk exon 45820846 45821567 1472 + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0459"; repClass "LTR"; repEnd "2943"; repFamily "ERVL"; repLeft "-2283"; repStart "2185"; chr3 rmsk exon 45821592 45821848 785 + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0459"; repClass "LTR"; repEnd "5137"; repFamily "ERVL"; repLeft "-89"; repStart "4879"; chr3 rmsk exon 45822229 45822568 1095 + . gene_id "ERV316A3_3p21.31c"; transcript_id "ERV316A3_3p21.31c"; locus "ERV316A3_3p21.31c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0459"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-10"; repStart "93"; ### HERVFRD_3p21.31 ### chr3 rmsk gene 46000357 46006717 . + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0036"; model_cov "4460"; model_pct "61.9"; chr3 rmsk exon 46000357 46000442 475 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0036"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-638"; repStart "8"; chr3 rmsk exon 46000444 46003204 13638 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0036"; repClass "LTR"; repEnd "3362"; repFamily "ERV1"; repLeft "-3843"; repStart "1095"; chr3 rmsk exon 46003514 46004352 1119 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0036"; repClass "LTR"; repEnd "4646"; repFamily "ERV1"; repLeft "-2559"; repStart "3813"; chr3 rmsk exon 46004691 46005838 1001 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0036"; repClass "LTR"; repEnd "5397"; repFamily "ERV1"; repLeft "-1808"; repStart "4193"; chr3 rmsk exon 46005870 46006023 1222 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0036"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "7041"; chr3 rmsk exon 46006024 46006717 3672 + . gene_id "HERVFRD_3p21.31"; transcript_id "HERVFRD_3p21.31"; locus "HERVFRD_3p21.31"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0036"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### HML6_3p21.31a ### chr3 rmsk gene 46046154 46054474 . - . gene_id "HML6_3p21.31a"; transcript_id "HML6_3p21.31a"; locus "HML6_3p21.31a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0012"; model_cov "7178"; model_pct "99.7"; chr3 rmsk exon 46046154 46046581 3293 - . gene_id "HML6_3p21.31a"; transcript_id "HML6_3p21.31a"; locus "HML6_3p21.31a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0012"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr3 rmsk exon 46046582 46051744 50172 - . gene_id "HML6_3p21.31a"; transcript_id "HML6_3p21.31a"; locus "HML6_3p21.31a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0012"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "2033"; repStart "0"; chr3 rmsk exon 46052050 46054022 50172 - . gene_id "HML6_3p21.31a"; transcript_id "HML6_3p21.31a"; locus "HML6_3p21.31a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0012"; repClass "LTR"; repEnd "2032"; repFamily "ERVK"; repLeft "23"; repStart "-5170"; chr3 rmsk exon 46054023 46054474 3441 - . gene_id "HML6_3p21.31a"; transcript_id "HML6_3p21.31a"; locus "HML6_3p21.31a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0012"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "1"; repStart "-18"; ### ERVLB4_3p21.31b ### chr3 rmsk gene 46057514 46059437 . + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0308"; model_cov "1087"; model_pct "19.0"; chr3 rmsk exon 46057514 46057860 1125 + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0308"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "-52"; repStart "1"; chr3 rmsk exon 46057995 46058064 1125 + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0308"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-2"; repStart "346"; chr3 rmsk exon 46058067 46058552 2684 + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0308"; repClass "LTR"; repEnd "523"; repFamily "ERVL"; repLeft "-5191"; repStart "1"; chr3 rmsk exon 46058865 46059013 2684 + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0308"; repClass "LTR"; repEnd "671"; repFamily "ERVL"; repLeft "-5043"; repStart "524"; chr3 rmsk exon 46059021 46059437 2312 + . gene_id "ERVLB4_3p21.31b"; transcript_id "ERVLB4_3p21.31b"; locus "ERVLB4_3p21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0308"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1905"; repStart "3391"; ### ERVLB4_3p21.31c ### chr3 rmsk gene 46059855 46061543 . - . gene_id "ERVLB4_3p21.31c"; transcript_id "ERVLB4_3p21.31c"; locus "ERVLB4_3p21.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0309"; model_cov "1674"; model_pct "29.3"; chr3 rmsk exon 46059855 46061543 8960 - . gene_id "ERVLB4_3p21.31c"; transcript_id "ERVLB4_3p21.31c"; locus "ERVLB4_3p21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0309"; repClass "LTR"; repEnd "5647"; repFamily "ERVL"; repLeft "3973"; repStart "-67"; ### HERVP71A_3p21.31 ### chr3 rmsk gene 46111061 46118672 . - . gene_id "HERVP71A_3p21.31"; transcript_id "HERVP71A_3p21.31"; locus "HERVP71A_3p21.31"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0018"; model_cov "6825"; model_pct "89.9"; chr3 rmsk exon 46111061 46111515 3445 - . gene_id "HERVP71A_3p21.31"; transcript_id "HERVP71A_3p21.31"; locus "HERVP71A_3p21.31"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0018"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 46111516 46116577 39493 - . gene_id "HERVP71A_3p21.31"; transcript_id "HERVP71A_3p21.31"; locus "HERVP71A_3p21.31"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0018"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "2467"; repStart "0"; chr3 rmsk exon 46116563 46118213 12624 - . gene_id "HERVP71A_3p21.31"; transcript_id "HERVP71A_3p21.31"; locus "HERVP71A_3p21.31"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0018"; repClass "LTR"; repEnd "1703"; repFamily "ERV1"; repLeft "1"; repStart "-5887"; chr3 rmsk exon 46118214 46118672 3595 - . gene_id "HERVP71A_3p21.31"; transcript_id "HERVP71A_3p21.31"; locus "HERVP71A_3p21.31"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0018"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3p21.31c ### chr3 rmsk gene 46246275 46252065 . - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0242"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 46246275 46246725 3565 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 46246726 46247105 2610 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 46247104 46247324 1459 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 46247322 46247998 4376 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 46248001 46248505 3461 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 46248496 46248643 905 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 46248638 46251605 21302 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 46251608 46252065 3383 - . gene_id "HERVH_3p21.31c"; transcript_id "HERVH_3p21.31c"; locus "HERVH_3p21.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0242"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_3p21.31d ### chr3 rmsk gene 46280238 46282236 . + . gene_id "ERVLE_3p21.31d"; transcript_id "ERVLE_3p21.31d"; locus "ERVLE_3p21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0724"; model_cov "1195"; model_pct "21.1"; chr3 rmsk exon 46280238 46280611 954 + . gene_id "ERVLE_3p21.31d"; transcript_id "ERVLE_3p21.31d"; locus "ERVLE_3p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0724"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "-3692"; repStart "1611"; chr3 rmsk exon 46280867 46280976 954 + . gene_id "ERVLE_3p21.31d"; transcript_id "ERVLE_3p21.31d"; locus "ERVLE_3p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0724"; repClass "LTR"; repEnd "2088"; repFamily "ERVL"; repLeft "-3579"; repStart "1976"; chr3 rmsk exon 46281294 46281598 954 + . gene_id "ERVLE_3p21.31d"; transcript_id "ERVLE_3p21.31d"; locus "ERVLE_3p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0724"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "-3208"; repStart "2102"; chr3 rmsk exon 46281881 46282236 691 + . gene_id "ERVLE_3p21.31d"; transcript_id "ERVLE_3p21.31d"; locus "ERVLE_3p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0724"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "-2855"; repStart "2450"; ### ERVLE_3p21.31e ### chr3 rmsk gene 46282260 46283076 . - . gene_id "ERVLE_3p21.31e"; transcript_id "ERVLE_3p21.31e"; locus "ERVLE_3p21.31e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0725"; model_cov "800"; model_pct "14.1"; chr3 rmsk exon 46282260 46283076 1305 - . gene_id "ERVLE_3p21.31e"; transcript_id "ERVLE_3p21.31e"; locus "ERVLE_3p21.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0725"; repClass "LTR"; repEnd "4095"; repFamily "ERVL"; repLeft "3295"; repStart "-1572"; ### HERVH_3p21.31d ### chr3 rmsk gene 46326736 46332857 . - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0243"; model_cov "5577"; model_pct "72.3"; chr3 rmsk exon 46326736 46327174 2527 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 46327175 46327698 3105 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr3 rmsk exon 46327700 46327755 297 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7663"; repStart "0"; chr3 rmsk exon 46327750 46328208 2604 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6489"; repStart "-765"; chr3 rmsk exon 46328209 46332417 21479 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "1"; repStart "-3184"; chr3 rmsk exon 46332418 46332857 2413 - . gene_id "HERVH_3p21.31d"; transcript_id "HERVH_3p21.31d"; locus "HERVH_3p21.31d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0243"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_3p21.31 ### chr3 rmsk gene 46333397 46335997 . + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0025"; model_cov "1055"; model_pct "15.4"; chr3 rmsk exon 46333397 46333763 2624 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "650"; repFamily "ERVK"; repLeft "-6187"; repStart "282"; chr3 rmsk exon 46334066 46334159 2624 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6091"; repStart "651"; chr3 rmsk exon 46334447 46334602 993 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "2489"; repFamily "ERVK"; repLeft "-4348"; repStart "2332"; chr3 rmsk exon 46335536 46335615 548 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "3553"; repFamily "ERVK"; repLeft "-3284"; repStart "3474"; chr3 rmsk exon 46335612 46335792 1018 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "3752"; repFamily "ERVK"; repLeft "-3085"; repStart "3602"; chr3 rmsk exon 46335789 46335997 1386 + . gene_id "HML5_3p21.31"; transcript_id "HML5_3p21.31"; locus "HML5_3p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0025"; repClass "LTR"; repEnd "2255"; repFamily "ERVK"; repLeft "-4582"; repStart "2049"; ### HERVH_3p21.31e ### chr3 rmsk gene 46387685 46393402 . - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0244"; model_cov "4617"; model_pct "59.9"; chr3 rmsk exon 46387685 46388125 2392 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 46388126 46388687 4023 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 46388681 46389533 5601 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5160"; repStart "-1697"; chr3 rmsk exon 46389533 46392157 14443 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "3549"; repFamily "ERV1"; repLeft "940"; repStart "-4164"; chr3 rmsk exon 46392340 46392476 604 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "939"; repFamily "ERV1"; repLeft "801"; repStart "-6774"; chr3 rmsk exon 46392537 46392963 898 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr3 rmsk exon 46392964 46393402 2397 - . gene_id "HERVH_3p21.31e"; transcript_id "HERVH_3p21.31e"; locus "HERVH_3p21.31e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0244"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_3p21.31d ### chr3 rmsk gene 46414268 46416315 . + . gene_id "ERVLB4_3p21.31d"; transcript_id "ERVLB4_3p21.31d"; locus "ERVLB4_3p21.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0310"; model_cov "1502"; model_pct "26.3"; chr3 rmsk exon 46414268 46414517 3462 + . gene_id "ERVLB4_3p21.31d"; transcript_id "ERVLB4_3p21.31d"; locus "ERVLB4_3p21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0310"; repClass "LTR"; repEnd "1367"; repFamily "ERVL"; repLeft "-4347"; repStart "1119"; chr3 rmsk exon 46414814 46415107 3462 + . gene_id "ERVLB4_3p21.31d"; transcript_id "ERVLB4_3p21.31d"; locus "ERVLB4_3p21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0310"; repClass "LTR"; repEnd "1672"; repFamily "ERVL"; repLeft "-4042"; repStart "1368"; chr3 rmsk exon 46415145 46415583 3462 + . gene_id "ERVLB4_3p21.31d"; transcript_id "ERVLB4_3p21.31d"; locus "ERVLB4_3p21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0310"; repClass "LTR"; repEnd "2131"; repFamily "ERVL"; repLeft "-3583"; repStart "1673"; chr3 rmsk exon 46415869 46416315 2079 + . gene_id "ERVLB4_3p21.31d"; transcript_id "ERVLB4_3p21.31d"; locus "ERVLB4_3p21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0310"; repClass "LTR"; repEnd "2608"; repFamily "ERVL"; repLeft "-3106"; repStart "2116"; ### HERVL18_3p21.31a ### chr3 rmsk gene 46417556 46419247 . - . gene_id "HERVL18_3p21.31a"; transcript_id "HERVL18_3p21.31a"; locus "HERVL18_3p21.31a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0031"; model_cov "1384"; model_pct "22.9"; chr3 rmsk exon 46417556 46417895 2225 - . gene_id "HERVL18_3p21.31a"; transcript_id "HERVL18_3p21.31a"; locus "HERVL18_3p21.31a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0031"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 46417897 46419247 26962 - . gene_id "HERVL18_3p21.31a"; transcript_id "HERVL18_3p21.31a"; locus "HERVL18_3p21.31a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0031"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4663"; repStart "0"; ### HERVL18_3p21.31b ### chr3 rmsk gene 46419310 46423900 . - . gene_id "HERVL18_3p21.31b"; transcript_id "HERVL18_3p21.31b"; locus "HERVL18_3p21.31b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0032"; model_cov "4342"; model_pct "71.8"; chr3 rmsk exon 46419310 46421786 26962 - . gene_id "HERVL18_3p21.31b"; transcript_id "HERVL18_3p21.31b"; locus "HERVL18_3p21.31b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0032"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "3506"; repStart "0"; chr3 rmsk exon 46421788 46423556 11526 - . gene_id "HERVL18_3p21.31b"; transcript_id "HERVL18_3p21.31b"; locus "HERVL18_3p21.31b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0032"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "9"; repStart "-4237"; chr3 rmsk exon 46423571 46423900 2308 - . gene_id "HERVL18_3p21.31b"; transcript_id "HERVL18_3p21.31b"; locus "HERVL18_3p21.31b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0032"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HML6_3p21.31b ### chr3 rmsk gene 46426543 46433630 . + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0015"; model_cov "4553"; model_pct "63.2"; chr3 rmsk exon 46426543 46427011 3632 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr3 rmsk exon 46427012 46429266 15503 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "2293"; repFamily "ERVK"; repLeft "-4909"; repStart "1"; chr3 rmsk exon 46429394 46430639 8200 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1885"; repStart "4035"; chr3 rmsk exon 46430635 46430694 3675 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "6284"; repFamily "ERVK"; repLeft "-918"; repStart "6223"; chr3 rmsk exon 46431106 46431541 3675 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "6723"; repFamily "ERVK"; repLeft "-479"; repStart "6288"; chr3 rmsk exon 46432693 46433161 3617 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "6719"; chr3 rmsk exon 46433164 46433630 3581 + . gene_id "HML6_3p21.31b"; transcript_id "HML6_3p21.31b"; locus "HML6_3p21.31b"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0015"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "3"; ### HERVL40_3p21.31 ### chr3 rmsk gene 46631054 46632393 . - . gene_id "HERVL40_3p21.31"; transcript_id "HERVL40_3p21.31"; locus "HERVL40_3p21.31"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0062"; model_cov "988"; model_pct "17.9"; chr3 rmsk exon 46631054 46631522 1617 - . gene_id "HERVL40_3p21.31"; transcript_id "HERVL40_3p21.31"; locus "HERVL40_3p21.31"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0062"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 46631523 46632016 1147 - . gene_id "HERVL40_3p21.31"; transcript_id "HERVL40_3p21.31"; locus "HERVL40_3p21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0062"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "4588"; repStart "-149"; chr3 rmsk exon 46632209 46632393 668 - . gene_id "HERVL40_3p21.31"; transcript_id "HERVL40_3p21.31"; locus "HERVL40_3p21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0062"; repClass "LTR"; repEnd "1364"; repFamily "ERVL"; repLeft "1169"; repStart "-4166"; ### ERV316A3_3p21.31d ### chr3 rmsk gene 46637487 46642758 . - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0461"; model_cov "2255"; model_pct "43.1"; chr3 rmsk exon 46637487 46638822 4681 - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0461"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "1641"; repStart "-2255"; chr3 rmsk exon 46638830 46639661 2922 - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0461"; repClass "LTR"; repEnd "1066"; repFamily "ERVL"; repLeft "214"; repStart "-4160"; chr3 rmsk exon 46641935 46642010 313 - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0461"; repClass "LTR"; repEnd "97"; repFamily "ERVL"; repLeft "24"; repStart "-5129"; chr3 rmsk exon 46642013 46642181 1309 - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0461"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "272"; repStart "-4"; chr3 rmsk exon 46642473 46642758 1309 - . gene_id "ERV316A3_3p21.31d"; transcript_id "ERV316A3_3p21.31d"; locus "ERV316A3_3p21.31d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0461"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "1"; repStart "-192"; ### HERVL_3p21.31a ### chr3 rmsk gene 46813334 46816554 . - . gene_id "HERVL_3p21.31a"; transcript_id "HERVL_3p21.31a"; locus "HERVL_3p21.31a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0251"; model_cov "2467"; model_pct "43.6"; chr3 rmsk exon 46813334 46815678 20064 - . gene_id "HERVL_3p21.31a"; transcript_id "HERVL_3p21.31a"; locus "HERVL_3p21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0251"; repClass "LTR"; repEnd "2469"; repFamily "ERVL"; repLeft "131"; repStart "-3185"; chr3 rmsk exon 46815981 46816108 20064 - . gene_id "HERVL_3p21.31a"; transcript_id "HERVL_3p21.31a"; locus "HERVL_3p21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0251"; repClass "LTR"; repEnd "130"; repFamily "ERVL"; repLeft "1"; repStart "-5524"; chr3 rmsk exon 46816109 46816554 3363 - . gene_id "HERVL_3p21.31a"; transcript_id "HERVL_3p21.31a"; locus "HERVL_3p21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0251"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_3p21.31e ### chr3 rmsk gene 46816558 46817200 . + . gene_id "ERV316A3_3p21.31e"; transcript_id "ERV316A3_3p21.31e"; locus "ERV316A3_3p21.31e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0462"; model_cov "659"; model_pct "12.6"; chr3 rmsk exon 46816558 46817200 1947 + . gene_id "ERV316A3_3p21.31e"; transcript_id "ERV316A3_3p21.31e"; locus "ERV316A3_3p21.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0462"; repClass "LTR"; repEnd "4164"; repFamily "ERVL"; repLeft "-1062"; repStart "3505"; ### ERVLE_3p21.31f ### chr3 rmsk gene 46834473 46837458 . - . gene_id "ERVLE_3p21.31f"; transcript_id "ERVLE_3p21.31f"; locus "ERVLE_3p21.31f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0727"; model_cov "1451"; model_pct "25.6"; chr3 rmsk exon 46834473 46835025 1957 - . gene_id "ERVLE_3p21.31f"; transcript_id "ERVLE_3p21.31f"; locus "ERVLE_3p21.31f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0727"; repClass "LTR"; repEnd "1690"; repFamily "ERVL"; repLeft "1138"; repStart "-3977"; chr3 rmsk exon 46836002 46836082 1957 - . gene_id "ERVLE_3p21.31f"; transcript_id "ERVLE_3p21.31f"; locus "ERVLE_3p21.31f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0727"; repClass "LTR"; repEnd "1137"; repFamily "ERVL"; repLeft "1065"; repStart "-4530"; chr3 rmsk exon 46836619 46837458 1957 - . gene_id "ERVLE_3p21.31f"; transcript_id "ERVLE_3p21.31f"; locus "ERVLE_3p21.31f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0727"; repClass "LTR"; repEnd "1058"; repFamily "ERVL"; repLeft "231"; repStart "-4609"; ### MER101_3p21.31 ### chr3 rmsk gene 47201791 47205359 . + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; category "internal"; intModel "MER101-int"; locid "MER101-int_0091"; model_cov "2312"; model_pct "34.8"; chr3 rmsk exon 47201791 47201977 522 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "303"; repFamily "ERV1"; repLeft "-6336"; repStart "109"; chr3 rmsk exon 47202005 47202091 269 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "360"; repFamily "ERV1"; repLeft "-6279"; repStart "269"; chr3 rmsk exon 47202105 47202244 458 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "1674"; repFamily "ERV1"; repLeft "-4965"; repStart "1541"; chr3 rmsk exon 47202756 47203117 2248 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "3129"; repFamily "ERV1"; repLeft "-3510"; repStart "2757"; chr3 rmsk exon 47203422 47203598 2248 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "3270"; repFamily "ERV1"; repLeft "-3369"; repStart "3130"; chr3 rmsk exon 47204585 47205036 749 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "4589"; repFamily "ERV1"; repLeft "-2050"; repStart "3736"; chr3 rmsk exon 47205082 47205359 749 + . gene_id "MER101_3p21.31"; transcript_id "MER101_3p21.31"; locus "MER101_3p21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0091"; repClass "LTR"; repEnd "5119"; repFamily "ERV1"; repLeft "-1520"; repStart "4590"; ### ERVLE_3p21.31g ### chr3 rmsk gene 47953560 47958499 . + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0728"; model_cov "4268"; model_pct "75.3"; chr3 rmsk exon 47953560 47953735 559 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "1282"; repFamily "ERVL"; repLeft "-4385"; repStart "1101"; chr3 rmsk exon 47954037 47954114 559 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "1341"; repFamily "ERVL"; repLeft "-4326"; repStart "1283"; chr3 rmsk exon 47954217 47955435 12189 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "2649"; repFamily "ERVL"; repLeft "-3018"; repStart "1343"; chr3 rmsk exon 47955482 47957175 12189 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "-1262"; repStart "2650"; chr3 rmsk exon 47957471 47957481 12189 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-1251"; repStart "4406"; chr3 rmsk exon 47957613 47958499 12189 + . gene_id "ERVLE_3p21.31g"; transcript_id "ERVLE_3p21.31g"; locus "ERVLE_3p21.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0728"; repClass "LTR"; repEnd "5375"; repFamily "ERVL"; repLeft "-292"; repStart "4417"; ### HERVL_3p21.31b ### chr3 rmsk gene 48003689 48011040 . + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0252"; model_cov "5650"; model_pct "99.9"; chr3 rmsk exon 48003689 48004124 2994 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr3 rmsk exon 48004139 48005079 44115 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "952"; repFamily "ERVL"; repLeft "-4702"; repStart "1"; chr3 rmsk exon 48005375 48007676 44115 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "-2365"; repStart "953"; chr3 rmsk exon 48007947 48009080 44115 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "-1224"; repStart "3290"; chr3 rmsk exon 48009400 48010617 44115 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4431"; chr3 rmsk exon 48010618 48011040 3066 + . gene_id "HERVL_3p21.31b"; transcript_id "HERVL_3p21.31b"; locus "HERVL_3p21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0252"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVIP10F_3p21.31 ### chr3 rmsk gene 48272779 48278831 . + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0030"; model_cov "3874"; model_pct "50.1"; chr3 rmsk exon 48272779 48273298 3535 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 48273324 48274514 3955 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "1015"; repFamily "ERV1"; repLeft "-6722"; repStart "26"; chr3 rmsk exon 48275309 48275858 2349 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "4503"; repFamily "ERV1"; repLeft "-3234"; repStart "3903"; chr3 rmsk exon 48275925 48276075 668 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "4814"; repFamily "ERV1"; repLeft "-2923"; repStart "4662"; chr3 rmsk exon 48276048 48276142 313 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "5369"; repFamily "ERV1"; repLeft "-2368"; repStart "5298"; chr3 rmsk exon 48276237 48276946 1647 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "6325"; repFamily "ERV1"; repLeft "-1412"; repStart "5634"; chr3 rmsk exon 48276952 48278316 8268 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "6364"; chr3 rmsk exon 48278318 48278831 3539 + . gene_id "HERVIP10F_3p21.31"; transcript_id "HERVIP10F_3p21.31"; locus "HERVIP10F_3p21.31"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0030"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_3p21.31 ### chr3 rmsk gene 48330526 48333802 . - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0060"; model_cov "4684"; model_pct "54.3"; chr3 rmsk exon 48330526 48330850 2217 - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0060"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr3 rmsk exon 48330851 48331141 2338 - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0060"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 48331132 48331170 306 - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0060"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr3 rmsk exon 48331161 48331311 1151 - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0060"; repClass "LTR"; repEnd "7153"; repFamily "ERV1"; repLeft "7002"; repStart "-1473"; chr3 rmsk exon 48331302 48333802 17915 - . gene_id "HERVW_3p21.31"; transcript_id "HERVW_3p21.31"; locus "HERVW_3p21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0060"; repClass "LTR"; repEnd "5741"; repFamily "ERV1"; repLeft "1537"; repStart "-2885"; ### HERVIP10FH_3p21.31 ### chr3 rmsk gene 48333982 48335714 . - . gene_id "HERVIP10FH_3p21.31"; transcript_id "HERVIP10FH_3p21.31"; locus "HERVIP10FH_3p21.31"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0037"; model_cov "1453"; model_pct "28.5"; chr3 rmsk exon 48333982 48334743 5706 - . gene_id "HERVIP10FH_3p21.31"; transcript_id "HERVIP10FH_3p21.31"; locus "HERVIP10FH_3p21.31"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0037"; repClass "LTR"; repEnd "1698"; repFamily "ERV1"; repLeft "934"; repStart "-3404"; chr3 rmsk exon 48335012 48335714 5401 - . gene_id "HERVIP10FH_3p21.31"; transcript_id "HERVIP10FH_3p21.31"; locus "HERVIP10FH_3p21.31"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0037"; repClass "LTR"; repEnd "-2813"; repFamily "ERV1"; repLeft "-3502"; repStart "-7915"; ### ERVLB4_3p21.31e ### chr3 rmsk gene 48509940 48513119 . + . gene_id "ERVLB4_3p21.31e"; transcript_id "ERVLB4_3p21.31e"; locus "ERVLB4_3p21.31e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0311"; model_cov "687"; model_pct "12.0"; chr3 rmsk exon 48509940 48510153 493 + . gene_id "ERVLB4_3p21.31e"; transcript_id "ERVLB4_3p21.31e"; locus "ERVLB4_3p21.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0311"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5165"; repStart "325"; chr3 rmsk exon 48512379 48512753 828 + . gene_id "ERVLB4_3p21.31e"; transcript_id "ERVLB4_3p21.31e"; locus "ERVLB4_3p21.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0311"; repClass "LTR"; repEnd "1161"; repFamily "ERVL"; repLeft "-4553"; repStart "782"; chr3 rmsk exon 48513030 48513119 828 + . gene_id "ERVLB4_3p21.31e"; transcript_id "ERVLB4_3p21.31e"; locus "ERVLB4_3p21.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0311"; repClass "LTR"; repEnd "1246"; repFamily "ERVL"; repLeft "-4468"; repStart "1162"; ### HERVH_3p21.31f ### chr3 rmsk gene 48723255 48730147 . - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0246"; model_cov "5854"; model_pct "75.9"; chr3 rmsk exon 48723255 48724154 27653 - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0246"; repClass "LTR"; repEnd "5858"; repFamily "ERV1"; repLeft "4968"; repStart "-1855"; chr3 rmsk exon 48724453 48724923 27653 - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0246"; repClass "LTR"; repEnd "4967"; repFamily "ERV1"; repLeft "4504"; repStart "-2746"; chr3 rmsk exon 48725228 48729043 27653 - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0246"; repClass "LTR"; repEnd "4503"; repFamily "ERV1"; repLeft "674"; repStart "-3210"; chr3 rmsk exon 48729085 48729800 27653 - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0246"; repClass "LTR"; repEnd "673"; repFamily "ERV1"; repLeft "1"; repStart "-7040"; chr3 rmsk exon 48729802 48730147 2381 - . gene_id "HERVH_3p21.31f"; transcript_id "HERVH_3p21.31f"; locus "HERVH_3p21.31f"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0246"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "136"; repStart "0"; ### HML3_3p21.31a ### chr3 rmsk gene 49219140 49220344 . + . gene_id "HML3_3p21.31a"; transcript_id "HML3_3p21.31a"; locus "HML3_3p21.31a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0037"; model_cov "705"; model_pct "11.7"; chr3 rmsk exon 49219140 49219649 4006 + . gene_id "HML3_3p21.31a"; transcript_id "HML3_3p21.31a"; locus "HML3_3p21.31a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0037"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 49219650 49220219 4221 + . gene_id "HML3_3p21.31a"; transcript_id "HML3_3p21.31a"; locus "HML3_3p21.31a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0037"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr3 rmsk exon 49220218 49220344 939 + . gene_id "HML3_3p21.31a"; transcript_id "HML3_3p21.31a"; locus "HML3_3p21.31a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0037"; repClass "LTR"; repEnd "1562"; repFamily "ERVK"; repLeft "-4459"; repStart "1436"; ### HML3_3p21.31b ### chr3 rmsk gene 49229259 49234078 . + . gene_id "HML3_3p21.31b"; transcript_id "HML3_3p21.31b"; locus "HML3_3p21.31b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0038"; model_cov "4460"; model_pct "74.1"; chr3 rmsk exon 49229259 49233690 35912 + . gene_id "HML3_3p21.31b"; transcript_id "HML3_3p21.31b"; locus "HML3_3p21.31b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0038"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1561"; chr3 rmsk exon 49233691 49234078 3122 + . gene_id "HML3_3p21.31b"; transcript_id "HML3_3p21.31b"; locus "HML3_3p21.31b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0038"; repClass "LTR"; repEnd "389"; repFamily "ERVK"; repLeft "-123"; repStart "1"; ### HERVFH19_3p21.31 ### chr3 rmsk gene 49541243 49544247 . + . gene_id "HERVFH19_3p21.31"; transcript_id "HERVFH19_3p21.31"; locus "HERVFH19_3p21.31"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0008"; model_cov "1909"; model_pct "24.7"; chr3 rmsk exon 49541243 49541370 372 + . gene_id "HERVFH19_3p21.31"; transcript_id "HERVFH19_3p21.31"; locus "HERVFH19_3p21.31"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0008"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-6878"; repStart "710"; chr3 rmsk exon 49542226 49542300 3836 + . gene_id "HERVFH19_3p21.31"; transcript_id "HERVFH19_3p21.31"; locus "HERVFH19_3p21.31"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0008"; repClass "LTR"; repEnd "1220"; repFamily "ERV1"; repLeft "-6499"; repStart "1110"; chr3 rmsk exon 49542609 49544247 3836 + . gene_id "HERVFH19_3p21.31"; transcript_id "HERVFH19_3p21.31"; locus "HERVFH19_3p21.31"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0008"; repClass "LTR"; repEnd "2889"; repFamily "ERV1"; repLeft "-4830"; repStart "1221"; ### MER4_3p21.31a ### chr3 rmsk gene 50305833 50309182 . + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0140"; model_cov "759"; model_pct "11.5"; chr3 rmsk exon 50305833 50306021 2395 + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0140"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "281"; chr3 rmsk exon 50306024 50306564 2367 + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0140"; repClass "LTR"; repEnd "-1184"; repFamily "ERV1"; repLeft "-7782"; repStart "-1671"; chr3 rmsk exon 50307716 50307798 327 + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0140"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-3310"; repStart "3205"; chr3 rmsk exon 50308095 50308126 327 + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0140"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3278"; repStart "3289"; chr3 rmsk exon 50309030 50309182 2292 + . gene_id "MER4_3p21.31a"; transcript_id "MER4_3p21.31a"; locus "MER4_3p21.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0140"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "-1074"; repStart "5366"; ### MER4_3p21.31b ### chr3 rmsk gene 50309485 50310263 . + . gene_id "MER4_3p21.31b"; transcript_id "MER4_3p21.31b"; locus "MER4_3p21.31b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0141"; model_cov "733"; model_pct "11.1"; chr3 rmsk exon 50309485 50309688 2292 + . gene_id "MER4_3p21.31b"; transcript_id "MER4_3p21.31b"; locus "MER4_3p21.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0141"; repClass "LTR"; repEnd "5512"; repFamily "ERV1"; repLeft "-1086"; repStart "5294"; chr3 rmsk exon 50309786 50310263 2292 + . gene_id "MER4_3p21.31b"; transcript_id "MER4_3p21.31b"; locus "MER4_3p21.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0141"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "-570"; repStart "5513"; ### MER41_3p21.2 ### chr3 rmsk gene 50832523 50835408 . - . gene_id "MER41_3p21.2"; transcript_id "MER41_3p21.2"; locus "MER41_3p21.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0087"; model_cov "2766"; model_pct "46.5"; chr3 rmsk exon 50832523 50832694 1314 - . gene_id "MER41_3p21.2"; transcript_id "MER41_3p21.2"; locus "MER41_3p21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0087"; repClass "LTR"; repEnd "172"; repFamily "ERV1"; repLeft "1"; repStart "-462"; chr3 rmsk exon 50832695 50835299 15630 - . gene_id "MER41_3p21.2"; transcript_id "MER41_3p21.2"; locus "MER41_3p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0087"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3300"; repStart "0"; chr3 rmsk exon 50835288 50835408 741 - . gene_id "MER41_3p21.2"; transcript_id "MER41_3p21.2"; locus "MER41_3p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0087"; repClass "LTR"; repEnd "2945"; repFamily "ERV1"; repLeft "2825"; repStart "-3001"; ### ERVLE_3p21.2 ### chr3 rmsk gene 50923601 50924796 . - . gene_id "ERVLE_3p21.2"; transcript_id "ERVLE_3p21.2"; locus "ERVLE_3p21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0730"; model_cov "1001"; model_pct "17.7"; chr3 rmsk exon 50923601 50923792 324 - . gene_id "ERVLE_3p21.2"; transcript_id "ERVLE_3p21.2"; locus "ERVLE_3p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0730"; repClass "LTR"; repEnd "5368"; repFamily "ERVL"; repLeft "5167"; repStart "-299"; chr3 rmsk exon 50924046 50924589 989 - . gene_id "ERVLE_3p21.2"; transcript_id "ERVLE_3p21.2"; locus "ERVLE_3p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0730"; repClass "LTR"; repEnd "4886"; repFamily "ERVL"; repLeft "4309"; repStart "-781"; chr3 rmsk exon 50924576 50924796 467 - . gene_id "ERVLE_3p21.2"; transcript_id "ERVLE_3p21.2"; locus "ERVLE_3p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0730"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "4145"; repStart "-1299"; ### HERVL_3p21.2 ### chr3 rmsk gene 51126962 51133823 . - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_0253"; model_cov "5033"; model_pct "89.0"; chr3 rmsk exon 51126962 51127351 2751 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0253"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-45"; chr3 rmsk exon 51127352 51130709 36043 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0253"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2271"; repStart "0"; chr3 rmsk exon 51131006 51132505 36043 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0253"; repClass "LTR"; repEnd "2270"; repFamily "ERVL"; repLeft "773"; repStart "-3384"; chr3 rmsk exon 51132505 51132639 1126 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0253"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "280"; repStart "-5221"; chr3 rmsk exon 51132639 51133164 4725 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0253"; prev_strand "+"; repClass "LTR"; repEnd "964"; repFamily "ERVL"; repLeft "-4690"; repStart "429"; chr3 rmsk exon 51133703 51133823 4725 - . gene_id "HERVL_3p21.2"; transcript_id "HERVL_3p21.2"; locus "HERVL_3p21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0253"; prev_strand "+"; repClass "LTR"; repEnd "1086"; repFamily "ERVL"; repLeft "-4568"; repStart "965"; ### HERVH48_3p21.2 ### chr3 rmsk gene 51531829 51534108 . - . gene_id "HERVH48_3p21.2"; transcript_id "HERVH48_3p21.2"; locus "HERVH48_3p21.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0012"; model_cov "1489"; model_pct "22.4"; chr3 rmsk exon 51531829 51532335 9875 - . gene_id "HERVH48_3p21.2"; transcript_id "HERVH48_3p21.2"; locus "HERVH48_3p21.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0012"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "5322"; repStart "-831"; chr3 rmsk exon 51532645 51533653 9875 - . gene_id "HERVH48_3p21.2"; transcript_id "HERVH48_3p21.2"; locus "HERVH48_3p21.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0012"; repClass "LTR"; repEnd "5321"; repFamily "ERV1"; repLeft "4333"; repStart "-1333"; chr3 rmsk exon 51533685 51534108 3278 - . gene_id "HERVH48_3p21.2"; transcript_id "HERVH48_3p21.2"; locus "HERVH48_3p21.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0012"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HERVI_3p21.2 ### chr3 rmsk gene 51737952 51742260 . + . gene_id "HERVI_3p21.2"; transcript_id "HERVI_3p21.2"; locus "HERVI_3p21.2"; category "internal"; intModel "HERVI-int"; locid "HERVI-int_0004"; model_cov "3871"; model_pct "49.7"; chr3 rmsk exon 51737952 51738684 4436 + . gene_id "HERVI_3p21.2"; transcript_id "HERVI_3p21.2"; locus "HERVI_3p21.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0004"; repClass "LTR"; repEnd "2027"; repFamily "ERV1"; repLeft "-5758"; repStart "1295"; chr3 rmsk exon 51739129 51739434 1487 + . gene_id "HERVI_3p21.2"; transcript_id "HERVI_3p21.2"; locus "HERVI_3p21.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0004"; repClass "LTR"; repEnd "2873"; repFamily "ERV1"; repLeft "-4912"; repStart "2566"; chr3 rmsk exon 51739411 51740407 13669 + . gene_id "HERVI_3p21.2"; transcript_id "HERVI_3p21.2"; locus "HERVI_3p21.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0004"; repClass "LTR"; repEnd "5579"; repFamily "ERV1"; repLeft "-2206"; repStart "4568"; chr3 rmsk exon 51740469 51742260 13669 + . gene_id "HERVI_3p21.2"; transcript_id "HERVI_3p21.2"; locus "HERVI_3p21.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0004"; repClass "LTR"; repEnd "7401"; repFamily "ERV1"; repLeft "-384"; repStart "5580"; ### HERV9_3p21.2 ### chr3 rmsk gene 51742261 51747980 . + . gene_id "HERV9_3p21.2"; transcript_id "HERV9_3p21.2"; locus "HERV9_3p21.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0033"; model_cov "5175"; model_pct "61.3"; chr3 rmsk exon 51742261 51742778 3089 + . gene_id "HERV9_3p21.2"; transcript_id "HERV9_3p21.2"; locus "HERV9_3p21.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0033"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "-236"; repStart "1"; chr3 rmsk exon 51742807 51747980 42097 + . gene_id "HERV9_3p21.2"; transcript_id "HERV9_3p21.2"; locus "HERV9_3p21.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0033"; repClass "LTR"; repEnd "5234"; repFamily "ERV1"; repLeft "-3202"; repStart "59"; ### MER4B_3p21.2a ### chr3 rmsk gene 51747970 51751871 . - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0085"; model_cov "2831"; model_pct "41.9"; chr3 rmsk exon 51747970 51748513 3143 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "4628"; repFamily "ERV1"; repLeft "4037"; repStart "-2130"; chr3 rmsk exon 51748484 51749014 2812 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "3480"; repFamily "ERV1"; repLeft "2904"; repStart "-3278"; chr3 rmsk exon 51749576 51749916 3955 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "2655"; repFamily "ERV1"; repLeft "2281"; repStart "-4103"; chr3 rmsk exon 51750213 51750555 3955 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "2280"; repFamily "ERV1"; repLeft "1916"; repStart "-4478"; chr3 rmsk exon 51750565 51750679 1322 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "1071"; repStart "-5560"; chr3 rmsk exon 51750712 51750774 1322 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "1070"; repFamily "ERV1"; repLeft "1016"; repStart "-5688"; chr3 rmsk exon 51751104 51751212 1322 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "1015"; repFamily "ERV1"; repLeft "917"; repStart "-5743"; chr3 rmsk exon 51751227 51751871 4530 - . gene_id "MER4B_3p21.2a"; transcript_id "MER4B_3p21.2a"; locus "MER4B_3p21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0085"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "198"; repStart "-5913"; ### ERVLB4_3p21.2 ### chr3 rmsk gene 51837382 51838627 . - . gene_id "ERVLB4_3p21.2"; transcript_id "ERVLB4_3p21.2"; locus "ERVLB4_3p21.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0313"; model_cov "630"; model_pct "11.0"; chr3 rmsk exon 51837382 51837636 940 - . gene_id "ERVLB4_3p21.2"; transcript_id "ERVLB4_3p21.2"; locus "ERVLB4_3p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0313"; repClass "LTR"; repEnd "4926"; repFamily "ERVL"; repLeft "4673"; repStart "-788"; chr3 rmsk exon 51838263 51838627 940 - . gene_id "ERVLB4_3p21.2"; transcript_id "ERVLB4_3p21.2"; locus "ERVLB4_3p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0313"; repClass "LTR"; repEnd "4672"; repFamily "ERVL"; repLeft "4295"; repStart "-1042"; ### ERV316A3_3p21.2a ### chr3 rmsk gene 51838684 51841803 . + . gene_id "ERV316A3_3p21.2a"; transcript_id "ERV316A3_3p21.2a"; locus "ERV316A3_3p21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0465"; model_cov "2797"; model_pct "53.5"; chr3 rmsk exon 51838684 51838915 5897 + . gene_id "ERV316A3_3p21.2a"; transcript_id "ERV316A3_3p21.2a"; locus "ERV316A3_3p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0465"; repClass "LTR"; repEnd "1289"; repFamily "ERVL"; repLeft "-3937"; repStart "1066"; chr3 rmsk exon 51839230 51841803 5897 + . gene_id "ERV316A3_3p21.2a"; transcript_id "ERV316A3_3p21.2a"; locus "ERV316A3_3p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0465"; repClass "LTR"; repEnd "3864"; repFamily "ERVL"; repLeft "-1362"; repStart "1290"; ### MER61_3p21.2 ### chr3 rmsk gene 51841775 51846337 . - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0085"; model_cov "3551"; model_pct "68.1"; chr3 rmsk exon 51841775 51842707 20903 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0085"; repClass "LTR"; repEnd "4257"; repFamily "ERV1"; repLeft "3345"; repStart "-960"; chr3 rmsk exon 51843010 51844039 20903 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0085"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "2317"; repStart "-1873"; chr3 rmsk exon 51844337 51845186 20903 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0085"; repClass "LTR"; repEnd "2316"; repFamily "ERV1"; repLeft "1462"; repStart "-2901"; chr3 rmsk exon 51845229 51845255 20903 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0085"; repClass "LTR"; repEnd "1461"; repFamily "ERV1"; repLeft "1409"; repStart "-3756"; chr3 rmsk exon 51845305 51846015 3622 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0085"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-4510"; chr3 rmsk exon 51846016 51846337 2151 - . gene_id "MER61_3p21.2"; transcript_id "MER61_3p21.2"; locus "MER61_3p21.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0085"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3p21.2b ### chr3 rmsk gene 51880777 51881408 . - . gene_id "ERV316A3_3p21.2b"; transcript_id "ERV316A3_3p21.2b"; locus "ERV316A3_3p21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0466"; model_cov "615"; model_pct "11.8"; chr3 rmsk exon 51880777 51881408 1196 - . gene_id "ERV316A3_3p21.2b"; transcript_id "ERV316A3_3p21.2b"; locus "ERV316A3_3p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0466"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "4501"; repStart "-110"; ### HERVIP10FH_3p21.2 ### chr3 rmsk gene 51896962 51902910 . + . gene_id "HERVIP10FH_3p21.2"; transcript_id "HERVIP10FH_3p21.2"; locus "HERVIP10FH_3p21.2"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0038"; model_cov "4777"; model_pct "93.6"; chr3 rmsk exon 51896962 51897435 3272 + . gene_id "HERVIP10FH_3p21.2"; transcript_id "HERVIP10FH_3p21.2"; locus "HERVIP10FH_3p21.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0038"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 51897436 51897751 2032 + . gene_id "HERVIP10FH_3p21.2"; transcript_id "HERVIP10FH_3p21.2"; locus "HERVIP10FH_3p21.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0038"; repClass "LTR"; repEnd "-2383"; repFamily "ERV1"; repLeft "-7485"; repStart "-2682"; chr3 rmsk exon 51897992 51902373 32537 + . gene_id "HERVIP10FH_3p21.2"; transcript_id "HERVIP10FH_3p21.2"; locus "HERVIP10FH_3p21.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0038"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "624"; chr3 rmsk exon 51902374 51902910 3686 + . gene_id "HERVIP10FH_3p21.2"; transcript_id "HERVIP10FH_3p21.2"; locus "HERVIP10FH_3p21.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0038"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_3p21.2 ### chr3 rmsk gene 52155574 52167033 . + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0145"; model_cov "4134"; model_pct "62.7"; chr3 rmsk exon 52155574 52156144 3629 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0145"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "10"; chr3 rmsk exon 52156148 52156636 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "577"; repFamily "ERV1"; repLeft "-6021"; repStart "1"; chr3 rmsk exon 52156947 52157145 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "788"; repFamily "ERV1"; repLeft "-5810"; repStart "578"; chr3 rmsk exon 52157442 52157893 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "1253"; repFamily "ERV1"; repLeft "-5345"; repStart "789"; chr3 rmsk exon 52158207 52158226 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "1275"; repFamily "ERV1"; repLeft "-5323"; repStart "1254"; chr3 rmsk exon 52159468 52160111 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "1790"; repFamily "ERV1"; repLeft "-4808"; repStart "1276"; chr3 rmsk exon 52160393 52160484 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "1878"; repFamily "ERV1"; repLeft "-4720"; repStart "1791"; chr3 rmsk exon 52160792 52161075 7193 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "2147"; repFamily "ERV1"; repLeft "-4451"; repStart "1879"; chr3 rmsk exon 52161377 52161399 334 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "3401"; repFamily "ERV1"; repLeft "-3197"; repStart "3378"; chr3 rmsk exon 52161378 52161423 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "-1936"; repStart "4619"; chr3 rmsk exon 52162862 52163142 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "4944"; repFamily "ERV1"; repLeft "-1654"; repStart "4663"; chr3 rmsk exon 52163446 52163803 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "5317"; repFamily "ERV1"; repLeft "-1281"; repStart "4945"; chr3 rmsk exon 52164397 52164430 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "5346"; repFamily "ERV1"; repLeft "-1252"; repStart "5318"; chr3 rmsk exon 52165067 52166322 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "6548"; repFamily "ERV1"; repLeft "-50"; repStart "5347"; chr3 rmsk exon 52166635 52166690 10035 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0145"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "6549"; chr3 rmsk exon 52166714 52167033 1831 + . gene_id "MER4_3p21.2"; transcript_id "MER4_3p21.2"; locus "MER4_3p21.2"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0145"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "-44"; repStart "286"; ### MER4B_3p21.2b ### chr3 rmsk gene 52167646 52169660 . + . gene_id "MER4B_3p21.2b"; transcript_id "MER4B_3p21.2b"; locus "MER4B_3p21.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0086"; model_cov "768"; model_pct "11.4"; chr3 rmsk exon 52167646 52167966 4666 + . gene_id "MER4B_3p21.2b"; transcript_id "MER4B_3p21.2b"; locus "MER4B_3p21.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0086"; repClass "LTR"; repEnd "6308"; repFamily "ERV1"; repLeft "-450"; repStart "5988"; chr3 rmsk exon 52168268 52168370 4666 + . gene_id "MER4B_3p21.2b"; transcript_id "MER4B_3p21.2b"; locus "MER4B_3p21.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0086"; repClass "LTR"; repEnd "6447"; repFamily "ERV1"; repLeft "-311"; repStart "6309"; chr3 rmsk exon 52168668 52169005 4666 + . gene_id "MER4B_3p21.2b"; transcript_id "MER4B_3p21.2b"; locus "MER4B_3p21.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0086"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6448"; chr3 rmsk exon 52169356 52169660 1836 + . gene_id "MER4B_3p21.2b"; transcript_id "MER4B_3p21.2b"; locus "MER4B_3p21.2b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0086"; repClass "LTR"; repEnd "365"; repFamily "ERV1"; repLeft "-245"; repStart "32"; ### ERV316A3_3p21.1a ### chr3 rmsk gene 53417669 53421099 . - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0467"; model_cov "2880"; model_pct "55.1"; chr3 rmsk exon 53417669 53417952 683 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "4828"; repStart "-110"; chr3 rmsk exon 53417982 53418148 858 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "4688"; repFamily "ERVL"; repLeft "4521"; repStart "-538"; chr3 rmsk exon 53418219 53418670 1027 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "4100"; repFamily "ERVL"; repLeft "3735"; repStart "-1126"; chr3 rmsk exon 53418659 53419173 4645 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "3545"; repFamily "ERVL"; repLeft "3059"; repStart "-1681"; chr3 rmsk exon 53419441 53420884 4645 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "1626"; repStart "-2168"; chr3 rmsk exon 53420877 53421009 388 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "686"; repFamily "ERVL"; repLeft "544"; repStart "-4540"; chr3 rmsk exon 53421023 53421099 355 - . gene_id "ERV316A3_3p21.1a"; transcript_id "ERV316A3_3p21.1a"; locus "ERV316A3_3p21.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0467"; repClass "LTR"; repEnd "224"; repFamily "ERVL"; repLeft "147"; repStart "-227"; ### ERV316A3_3p21.1b ### chr3 rmsk gene 53424460 53428060 . - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0468"; model_cov "2585"; model_pct "49.5"; chr3 rmsk exon 53424460 53424807 1185 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "2"; repStart "-9"; chr3 rmsk exon 53424828 53425170 1482 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "5201"; repFamily "ERVL"; repLeft "4851"; repStart "-25"; chr3 rmsk exon 53425180 53425234 4190 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "3688"; repFamily "ERVL"; repLeft "3639"; repStart "-1538"; chr3 rmsk exon 53425534 53426596 4190 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "3638"; repFamily "ERVL"; repLeft "2615"; repStart "-1588"; chr3 rmsk exon 53426620 53427510 2336 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "2436"; repFamily "ERVL"; repLeft "1597"; repStart "-2790"; chr3 rmsk exon 53427537 53427830 2336 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "1272"; repStart "-3630"; chr3 rmsk exon 53427831 53428060 1147 - . gene_id "ERV316A3_3p21.1b"; transcript_id "ERV316A3_3p21.1b"; locus "ERV316A3_3p21.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0468"; repClass "LTR"; repEnd "239"; repFamily "ERVL"; repLeft "1"; repStart "-224"; ### ERV316A3_3p21.1c ### chr3 rmsk gene 53452647 53455296 . - . gene_id "ERV316A3_3p21.1c"; transcript_id "ERV316A3_3p21.1c"; locus "ERV316A3_3p21.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0469"; model_cov "2387"; model_pct "45.7"; chr3 rmsk exon 53452647 53454022 6501 - . gene_id "ERV316A3_3p21.1c"; transcript_id "ERV316A3_3p21.1c"; locus "ERV316A3_3p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0469"; repClass "LTR"; repEnd "5168"; repFamily "ERVL"; repLeft "3762"; repStart "-58"; chr3 rmsk exon 53454333 53455296 6501 - . gene_id "ERV316A3_3p21.1c"; transcript_id "ERV316A3_3p21.1c"; locus "ERV316A3_3p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0469"; repClass "LTR"; repEnd "3761"; repFamily "ERVL"; repLeft "2780"; repStart "-1465"; ### ERVLE_3p21.1 ### chr3 rmsk gene 53614763 53615857 . - . gene_id "ERVLE_3p21.1"; transcript_id "ERVLE_3p21.1"; locus "ERVLE_3p21.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0731"; model_cov "1094"; model_pct "19.3"; chr3 rmsk exon 53614763 53615857 2790 - . gene_id "ERVLE_3p21.1"; transcript_id "ERVLE_3p21.1"; locus "ERVLE_3p21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0731"; repClass "LTR"; repEnd "5586"; repFamily "ERVL"; repLeft "4492"; repStart "-81"; ### HERVH_3p14.3a ### chr3 rmsk gene 54634484 54640204 . - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0248"; model_cov "4905"; model_pct "63.6"; chr3 rmsk exon 54634484 54634934 3522 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 54634935 54635307 2419 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 54635306 54635523 1483 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 54635525 54636179 4221 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 54636174 54636675 3481 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3500"; repStart "-3713"; chr3 rmsk exon 54636679 54636824 913 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr3 rmsk exon 54636819 54639750 20168 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 54639753 54640204 3497 - . gene_id "HERVH_3p14.3a"; transcript_id "HERVH_3p14.3a"; locus "HERVH_3p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0248"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_3p14.3a ### chr3 rmsk gene 54977737 54983085 . - . gene_id "MER41_3p14.3a"; transcript_id "MER41_3p14.3a"; locus "MER41_3p14.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0088"; model_cov "5943"; model_pct "99.9"; chr3 rmsk exon 54977737 54978288 4233 - . gene_id "MER41_3p14.3a"; transcript_id "MER41_3p14.3a"; locus "MER41_3p14.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0088"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 54978289 54982534 13101 - . gene_id "MER41_3p14.3a"; transcript_id "MER41_3p14.3a"; locus "MER41_3p14.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0088"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 54982535 54983085 3717 - . gene_id "MER41_3p14.3a"; transcript_id "MER41_3p14.3a"; locus "MER41_3p14.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0088"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3p14.3 ### chr3 rmsk gene 55260344 55264254 . + . gene_id "HERVL_3p14.3"; transcript_id "HERVL_3p14.3"; locus "HERVL_3p14.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0255"; model_cov "3448"; model_pct "61.0"; chr3 rmsk exon 55260344 55260736 3033 + . gene_id "HERVL_3p14.3"; transcript_id "HERVL_3p14.3"; locus "HERVL_3p14.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0255"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-37"; repStart "1"; chr3 rmsk exon 55260785 55260819 3033 + . gene_id "HERVL_3p14.3"; transcript_id "HERVL_3p14.3"; locus "HERVL_3p14.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0255"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-3"; repStart "408"; chr3 rmsk exon 55260823 55264254 28281 + . gene_id "HERVL_3p14.3"; transcript_id "HERVL_3p14.3"; locus "HERVL_3p14.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0255"; repClass "LTR"; repEnd "3449"; repFamily "ERVL"; repLeft "-2205"; repStart "1"; ### ERVLE_3p14.3a ### chr3 rmsk gene 55799081 55799888 . + . gene_id "ERVLE_3p14.3a"; transcript_id "ERVLE_3p14.3a"; locus "ERVLE_3p14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0732"; model_cov "872"; model_pct "15.4"; chr3 rmsk exon 55799081 55799888 774 + . gene_id "ERVLE_3p14.3a"; transcript_id "ERVLE_3p14.3a"; locus "ERVLE_3p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0732"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "-736"; repStart "4059"; ### ERVLE_3p14.3b ### chr3 rmsk gene 57178398 57179278 . + . gene_id "ERVLE_3p14.3b"; transcript_id "ERVLE_3p14.3b"; locus "ERVLE_3p14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0733"; model_cov "886"; model_pct "15.6"; chr3 rmsk exon 57178398 57179278 1744 + . gene_id "ERVLE_3p14.3b"; transcript_id "ERVLE_3p14.3b"; locus "ERVLE_3p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0733"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "-140"; repStart "4641"; ### HERVH_3p14.3b ### chr3 rmsk gene 57303802 57309115 . + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0249"; model_cov "5108"; model_pct "66.2"; chr3 rmsk exon 57303802 57304262 3242 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 57304265 57307097 14381 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 57307079 57307916 5303 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3142"; chr3 rmsk exon 57307919 57308530 2859 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr3 rmsk exon 57308535 57308747 1295 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 57308748 57309115 2327 + . gene_id "HERVH_3p14.3b"; transcript_id "HERVH_3p14.3b"; locus "HERVH_3p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0249"; repClass "LTR"; repEnd "7710"; repFamily "ERV1"; repLeft "-3"; repStart "7324"; ### MER41_3p14.3b ### chr3 rmsk gene 58436193 58439854 . - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0089"; model_cov "1633"; model_pct "27.5"; chr3 rmsk exon 58436193 58436745 4479 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0089"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 58436746 58437207 8675 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0089"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5478"; repStart "-2"; chr3 rmsk exon 58437583 58437859 8675 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0089"; repClass "LTR"; repEnd "5477"; repFamily "ERV1"; repLeft "5203"; repStart "-469"; chr3 rmsk exon 58438163 58438585 8675 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0089"; repClass "LTR"; repEnd "5202"; repFamily "ERV1"; repLeft "4763"; repStart "-744"; chr3 rmsk exon 58438575 58439026 3017 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0089"; repClass "LTR"; repEnd "3673"; repFamily "ERV1"; repLeft "3219"; repStart "-2273"; chr3 rmsk exon 58439075 58439208 3770 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0089"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "425"; repStart "0"; chr3 rmsk exon 58439505 58439854 3770 - . gene_id "MER41_3p14.3b"; transcript_id "MER41_3p14.3b"; locus "MER41_3p14.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0089"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "75"; repStart "-130"; ### HERVH_3p14.3c ### chr3 rmsk gene 58592371 58595704 . + . gene_id "HERVH_3p14.3c"; transcript_id "HERVH_3p14.3c"; locus "HERVH_3p14.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0250"; model_cov "2902"; model_pct "37.6"; chr3 rmsk exon 58592371 58594682 13921 + . gene_id "HERVH_3p14.3c"; transcript_id "HERVH_3p14.3c"; locus "HERVH_3p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0250"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "4636"; chr3 rmsk exon 58594677 58594727 322 + . gene_id "HERVH_3p14.3c"; transcript_id "HERVH_3p14.3c"; locus "HERVH_3p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0250"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr3 rmsk exon 58594729 58595268 3432 + . gene_id "HERVH_3p14.3c"; transcript_id "HERVH_3p14.3c"; locus "HERVH_3p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0250"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr3 rmsk exon 58595269 58595704 2609 + . gene_id "HERVH_3p14.3c"; transcript_id "HERVH_3p14.3c"; locus "HERVH_3p14.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0250"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### MER4B_3p14.2 ### chr3 rmsk gene 58691923 58694570 . - . gene_id "MER4B_3p14.2"; transcript_id "MER4B_3p14.2"; locus "MER4B_3p14.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0087"; model_cov "3036"; model_pct "44.9"; chr3 rmsk exon 58691923 58692694 2754 - . gene_id "MER4B_3p14.2"; transcript_id "MER4B_3p14.2"; locus "MER4B_3p14.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0087"; repClass "LTR"; repEnd "4298"; repFamily "ERV1"; repLeft "2897"; repStart "-2460"; chr3 rmsk exon 58692938 58693619 4447 - . gene_id "MER4B_3p14.2"; transcript_id "MER4B_3p14.2"; locus "MER4B_3p14.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0087"; repClass "LTR"; repEnd "2655"; repFamily "ERV1"; repLeft "1924"; repStart "-4103"; chr3 rmsk exon 58693620 58693887 1532 - . gene_id "MER4B_3p14.2"; transcript_id "MER4B_3p14.2"; locus "MER4B_3p14.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0087"; repClass "LTR"; repEnd "1180"; repFamily "ERV1"; repLeft "924"; repStart "-5578"; chr3 rmsk exon 58693910 58694570 4517 - . gene_id "MER4B_3p14.2"; transcript_id "MER4B_3p14.2"; locus "MER4B_3p14.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0087"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "198"; repStart "-5912"; ### ERVLB4_3p14.2 ### chr3 rmsk gene 58713101 58717281 . - . gene_id "ERVLB4_3p14.2"; transcript_id "ERVLB4_3p14.2"; locus "ERVLB4_3p14.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0314"; model_cov "3130"; model_pct "54.8"; chr3 rmsk exon 58713101 58713393 1389 - . gene_id "ERVLB4_3p14.2"; transcript_id "ERVLB4_3p14.2"; locus "ERVLB4_3p14.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0314"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "129"; repStart "-85"; chr3 rmsk exon 58713417 58713487 399 - . gene_id "ERVLB4_3p14.2"; transcript_id "ERVLB4_3p14.2"; locus "ERVLB4_3p14.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0314"; repClass "LTR"; repEnd "-131"; repFamily "ERVL"; repLeft "-201"; repStart "-646"; chr3 rmsk exon 58713488 58715758 19745 - . gene_id "ERVLB4_3p14.2"; transcript_id "ERVLB4_3p14.2"; locus "ERVLB4_3p14.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0314"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3402"; repStart "0"; chr3 rmsk exon 58716463 58717281 19745 - . gene_id "ERVLB4_3p14.2"; transcript_id "ERVLB4_3p14.2"; locus "ERVLB4_3p14.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0314"; repClass "LTR"; repEnd "3395"; repFamily "ERVL"; repLeft "2577"; repStart "-2319"; ### ERVLE_3p14.2a ### chr3 rmsk gene 60767746 60770164 . + . gene_id "ERVLE_3p14.2a"; transcript_id "ERVLE_3p14.2a"; locus "ERVLE_3p14.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0735"; model_cov "1581"; model_pct "27.9"; chr3 rmsk exon 60767746 60768243 835 + . gene_id "ERVLE_3p14.2a"; transcript_id "ERVLE_3p14.2a"; locus "ERVLE_3p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0735"; repClass "LTR"; repEnd "3781"; repFamily "ERVL"; repLeft "-1886"; repStart "3282"; chr3 rmsk exon 60768413 60768562 254 + . gene_id "ERVLE_3p14.2a"; transcript_id "ERVLE_3p14.2a"; locus "ERVLE_3p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0735"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "-1505"; repStart "4007"; chr3 rmsk exon 60768841 60769472 1687 + . gene_id "ERVLE_3p14.2a"; transcript_id "ERVLE_3p14.2a"; locus "ERVLE_3p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0735"; repClass "LTR"; repEnd "4830"; repFamily "ERVL"; repLeft "-837"; repStart "4172"; chr3 rmsk exon 60769896 60770164 1687 + . gene_id "ERVLE_3p14.2a"; transcript_id "ERVLE_3p14.2a"; locus "ERVLE_3p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0735"; repClass "LTR"; repEnd "5100"; repFamily "ERVL"; repLeft "-567"; repStart "4831"; ### MER61_3p14.2 ### chr3 rmsk gene 60775299 60781077 . + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0086"; model_cov "4595"; model_pct "88.1"; chr3 rmsk exon 60775299 60775622 1637 + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0086"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 60775623 60776187 1558 + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0086"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "1"; chr3 rmsk exon 60776225 60777128 10421 + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0086"; repClass "LTR"; repEnd "2289"; repFamily "ERV1"; repLeft "-2928"; repStart "1320"; chr3 rmsk exon 60777881 60780751 22516 + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0086"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2290"; chr3 rmsk exon 60780752 60781077 1736 + . gene_id "MER61_3p14.2"; transcript_id "MER61_3p14.2"; locus "MER61_3p14.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0086"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3p14.2b ### chr3 rmsk gene 62693920 62695295 . + . gene_id "ERVLE_3p14.2b"; transcript_id "ERVLE_3p14.2b"; locus "ERVLE_3p14.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0736"; model_cov "1049"; model_pct "18.5"; chr3 rmsk exon 62693920 62694163 1030 + . gene_id "ERVLE_3p14.2b"; transcript_id "ERVLE_3p14.2b"; locus "ERVLE_3p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0736"; repClass "LTR"; repEnd "4154"; repFamily "ERVL"; repLeft "-1513"; repStart "3908"; chr3 rmsk exon 62694442 62695051 2350 + . gene_id "ERVLE_3p14.2b"; transcript_id "ERVLE_3p14.2b"; locus "ERVLE_3p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0736"; repClass "LTR"; repEnd "4799"; repFamily "ERVL"; repLeft "-868"; repStart "4167"; chr3 rmsk exon 62695126 62695295 321 + . gene_id "ERVLE_3p14.2b"; transcript_id "ERVLE_3p14.2b"; locus "ERVLE_3p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0736"; repClass "LTR"; repEnd "5623"; repFamily "ERVL"; repLeft "-44"; repStart "5452"; ### ERV316A3_3p14.2 ### chr3 rmsk gene 63224768 63225603 . - . gene_id "ERV316A3_3p14.2"; transcript_id "ERV316A3_3p14.2"; locus "ERV316A3_3p14.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0470"; model_cov "615"; model_pct "11.8"; chr3 rmsk exon 63224768 63225353 1146 - . gene_id "ERV316A3_3p14.2"; transcript_id "ERV316A3_3p14.2"; locus "ERV316A3_3p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0470"; repClass "LTR"; repEnd "4948"; repFamily "ERVL"; repLeft "4333"; repStart "-278"; chr3 rmsk exon 63225486 63225603 373 - . gene_id "ERV316A3_3p14.2"; transcript_id "ERV316A3_3p14.2"; locus "ERV316A3_3p14.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0470"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "317"; repStart "-15"; ### HERVH_3p14.2 ### chr3 rmsk gene 63583912 63584645 . - . gene_id "HERVH_3p14.2"; transcript_id "HERVH_3p14.2"; locus "HERVH_3p14.2"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0251"; model_cov "896"; model_pct "11.6"; chr3 rmsk exon 63583912 63584645 1331 - . gene_id "HERVH_3p14.2"; transcript_id "HERVH_3p14.2"; locus "HERVH_3p14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0251"; repClass "LTR"; repEnd "5737"; repFamily "ERV1"; repLeft "4841"; repStart "-1976"; ### MER34B_3p14.1 ### chr3 rmsk gene 63845056 63847820 . + . gene_id "MER34B_3p14.1"; transcript_id "MER34B_3p14.1"; locus "MER34B_3p14.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0057"; model_cov "633"; model_pct "11.8"; chr3 rmsk exon 63845056 63845255 555 + . gene_id "MER34B_3p14.1"; transcript_id "MER34B_3p14.1"; locus "MER34B_3p14.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0057"; repClass "LTR"; repEnd "1171"; repFamily "ERV1"; repLeft "-4185"; repStart "973"; chr3 rmsk exon 63845247 63845349 359 + . gene_id "MER34B_3p14.1"; transcript_id "MER34B_3p14.1"; locus "MER34B_3p14.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0057"; repClass "LTR"; repEnd "1219"; repFamily "ERV1"; repLeft "-4137"; repStart "1117"; chr3 rmsk exon 63847205 63847455 820 + . gene_id "MER34B_3p14.1"; transcript_id "MER34B_3p14.1"; locus "MER34B_3p14.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0057"; repClass "LTR"; repEnd "3591"; repFamily "ERV1"; repLeft "-1765"; repStart "3338"; chr3 rmsk exon 63847760 63847820 820 + . gene_id "MER34B_3p14.1"; transcript_id "MER34B_3p14.1"; locus "MER34B_3p14.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0057"; repClass "LTR"; repEnd "3672"; repFamily "ERV1"; repLeft "-1684"; repStart "3592"; ### ERVLB4_3p14.1 ### chr3 rmsk gene 65214795 65216849 . + . gene_id "ERVLB4_3p14.1"; transcript_id "ERVLB4_3p14.1"; locus "ERVLB4_3p14.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0315"; model_cov "1507"; model_pct "26.4"; chr3 rmsk exon 65214795 65215934 5857 + . gene_id "ERVLB4_3p14.1"; transcript_id "ERVLB4_3p14.1"; locus "ERVLB4_3p14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0315"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-319"; repStart "4216"; chr3 rmsk exon 65216097 65216421 1615 + . gene_id "ERVLB4_3p14.1"; transcript_id "ERVLB4_3p14.1"; locus "ERVLB4_3p14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0315"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5385"; chr3 rmsk exon 65216422 65216753 2035 + . gene_id "ERVLB4_3p14.1"; transcript_id "ERVLB4_3p14.1"; locus "ERVLB4_3p14.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0315"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr3 rmsk exon 65216810 65216849 2035 + . gene_id "ERVLB4_3p14.1"; transcript_id "ERVLB4_3p14.1"; locus "ERVLB4_3p14.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0315"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "376"; ### HERVH_3p14.1 ### chr3 rmsk gene 67037862 67044184 . - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0252"; model_cov "5707"; model_pct "74.0"; chr3 rmsk exon 67037862 67038295 2404 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 67038296 67038855 3965 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 67038849 67039262 2535 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr3 rmsk exon 67039254 67040429 8084 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3994"; repStart "-2564"; chr3 rmsk exon 67040422 67041009 3967 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "3745"; repFamily "ERV1"; repLeft "3159"; repStart "-3968"; chr3 rmsk exon 67041013 67043750 14233 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr3 rmsk exon 67043751 67044184 2603 - . gene_id "HERVH_3p14.1"; transcript_id "HERVH_3p14.1"; locus "HERVH_3p14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0252"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL32_3p14.1 ### chr3 rmsk gene 67228015 67232424 . - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0010"; model_cov "2865"; model_pct "83.8"; chr3 rmsk exon 67228015 67228195 912 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "271"; repStart "0"; chr3 rmsk exon 67228210 67228256 320 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "3"; repStart "-407"; chr3 rmsk exon 67228257 67228312 488 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "56"; repFamily "ERVL"; repLeft "5"; repStart "-401"; chr3 rmsk exon 67228339 67228509 552 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "3402"; repFamily "ERVL"; repLeft "3221"; repStart "-16"; chr3 rmsk exon 67229236 67229368 344 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "2298"; repFamily "ERVL"; repLeft "2166"; repStart "-1120"; chr3 rmsk exon 67229624 67230730 3250 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "1757"; repFamily "ERVL"; repLeft "515"; repStart "-1661"; chr3 rmsk exon 67230857 67232133 3749 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "1"; repStart "-2107"; chr3 rmsk exon 67232134 67232302 840 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "271"; repStart "0"; chr3 rmsk exon 67232304 67232345 248 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "22"; repStart "-383"; chr3 rmsk exon 67232347 67232424 470 - . gene_id "HERVL32_3p14.1"; transcript_id "HERVL32_3p14.1"; locus "HERVL32_3p14.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0010"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "1"; repStart "-383"; ### HERVL_3p14.1a ### chr3 rmsk gene 67833950 67838437 . + . gene_id "HERVL_3p14.1a"; transcript_id "HERVL_3p14.1a"; locus "HERVL_3p14.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0256"; model_cov "3453"; model_pct "61.1"; chr3 rmsk exon 67833950 67834380 3113 + . gene_id "HERVL_3p14.1a"; transcript_id "HERVL_3p14.1a"; locus "HERVL_3p14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0256"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 67834537 67838001 26021 + . gene_id "HERVL_3p14.1a"; transcript_id "HERVL_3p14.1a"; locus "HERVL_3p14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0256"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2201"; chr3 rmsk exon 67838002 67838437 2978 + . gene_id "HERVL_3p14.1a"; transcript_id "HERVL_3p14.1a"; locus "HERVL_3p14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0256"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HERVL_3p14.1b ### chr3 rmsk gene 68439359 68442002 . + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_0258"; model_cov "1038"; model_pct "18.4"; chr3 rmsk exon 68439359 68439398 3046 + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0258"; prev_strand "-"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "414"; repStart "0"; chr3 rmsk exon 68439445 68439831 3046 + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0258"; prev_strand "-"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "2"; repStart "-40"; chr3 rmsk exon 68439832 68440021 5469 + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0258"; prev_strand "-"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5469"; repStart "0"; chr3 rmsk exon 68440384 68440970 5469 + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0258"; prev_strand "-"; repClass "LTR"; repEnd "5468"; repFamily "ERVL"; repLeft "4861"; repStart "-186"; chr3 rmsk exon 68440970 68442002 7895 + . gene_id "HERVL_3p14.1b"; transcript_id "HERVL_3p14.1b"; locus "HERVL_3p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0258"; repClass "LTR"; repEnd "3854"; repFamily "ERVL"; repLeft "-1800"; repStart "2816"; ### HERVL_3p13a ### chr3 rmsk gene 69976601 69983100 . + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0259"; model_cov "5652"; model_pct "100.0"; chr3 rmsk exon 69976601 69976992 2940 + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0259"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr3 rmsk exon 69977033 69977078 2940 + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0259"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "387"; chr3 rmsk exon 69977084 69979451 40292 + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0259"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3248"; repStart "1"; chr3 rmsk exon 69979519 69982713 40292 + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0259"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2407"; chr3 rmsk exon 69982718 69983100 2840 + . gene_id "HERVL_3p13a"; transcript_id "HERVL_3p13a"; locus "HERVL_3p13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0259"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "-57"; repStart "5"; ### MER101_3p13 ### chr3 rmsk gene 70158554 70159177 . - . gene_id "MER101_3p13"; transcript_id "MER101_3p13"; locus "MER101_3p13"; category "internal"; intModel "MER101-int"; locid "MER101-int_0092"; model_cov "992"; model_pct "14.9"; chr3 rmsk exon 70158554 70158692 793 - . gene_id "MER101_3p13"; transcript_id "MER101_3p13"; locus "MER101_3p13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0092"; repClass "LTR"; repEnd "3059"; repFamily "ERV1"; repLeft "2911"; repStart "-3580"; chr3 rmsk exon 70158709 70159177 1420 - . gene_id "MER101_3p13"; transcript_id "MER101_3p13"; locus "MER101_3p13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0092"; repClass "LTR"; repEnd "2678"; repFamily "ERV1"; repLeft "1834"; repStart "-3961"; ### HERVH_3p13a ### chr3 rmsk gene 70434672 70440419 . - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0253"; model_cov "5110"; model_pct "66.3"; chr3 rmsk exon 70434672 70435083 2733 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 70435084 70435462 2183 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 70435461 70435676 1439 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 70435678 70436340 4293 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 70436343 70437197 6224 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr3 rmsk exon 70437192 70440002 14823 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 70440010 70440419 2736 - . gene_id "HERVH_3p13a"; transcript_id "HERVH_3p13a"; locus "HERVH_3p13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0253"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### ERVL_3p13 ### chr3 rmsk gene 70637953 70641157 . - . gene_id "ERVL_3p13"; transcript_id "ERVL_3p13"; locus "ERVL_3p13"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0076"; model_cov "2355"; model_pct "40.9"; chr3 rmsk exon 70637953 70638477 2719 - . gene_id "ERVL_3p13"; transcript_id "ERVL_3p13"; locus "ERVL_3p13"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0076"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 70638478 70639288 13972 - . gene_id "ERVL_3p13"; transcript_id "ERVL_3p13"; locus "ERVL_3p13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0076"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4950"; repStart "0"; chr3 rmsk exon 70639609 70641157 13972 - . gene_id "ERVL_3p13"; transcript_id "ERVL_3p13"; locus "ERVL_3p13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0076"; repClass "LTR"; repEnd "4949"; repFamily "ERVL"; repLeft "3401"; repStart "-808"; ### HERVL_3p13b ### chr3 rmsk gene 71979900 71983185 . - . gene_id "HERVL_3p13b"; transcript_id "HERVL_3p13b"; locus "HERVL_3p13b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0260"; model_cov "2640"; model_pct "46.7"; chr3 rmsk exon 71979900 71980083 3162 - . gene_id "HERVL_3p13b"; transcript_id "HERVL_3p13b"; locus "HERVL_3p13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0260"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "218"; repStart "-55"; chr3 rmsk exon 71980382 71980599 3162 - . gene_id "HERVL_3p13b"; transcript_id "HERVL_3p13b"; locus "HERVL_3p13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0260"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "1"; repStart "-227"; chr3 rmsk exon 71980600 71983185 21291 - . gene_id "HERVL_3p13b"; transcript_id "HERVL_3p13b"; locus "HERVL_3p13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0260"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3014"; repStart "0"; ### HERVH_3p13b ### chr3 rmsk gene 72023126 72028900 . + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0254"; model_cov "5110"; model_pct "66.3"; chr3 rmsk exon 72023126 72023532 2796 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 72023535 72026395 16193 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 72026390 72027239 6377 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr3 rmsk exon 72027242 72027904 4466 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 72027906 72028116 1369 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 72028115 72028494 2376 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 72028495 72028900 2939 + . gene_id "HERVH_3p13b"; transcript_id "HERVH_3p13b"; locus "HERVH_3p13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0254"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### ERV316A3_3p12.3a ### chr3 rmsk gene 74548876 74551293 . + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0471"; model_cov "1706"; model_pct "32.6"; chr3 rmsk exon 74548876 74549041 1039 + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0471"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2244"; repStart "2817"; chr3 rmsk exon 74549445 74549645 1039 + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0471"; repClass "LTR"; repEnd "3178"; repFamily "ERVL"; repLeft "-2048"; repStart "2983"; chr3 rmsk exon 74549665 74550107 1098 + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0471"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2846"; chr3 rmsk exon 74550142 74550554 1835 + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0471"; repClass "LTR"; repEnd "3867"; repFamily "ERVL"; repLeft "-1359"; repStart "3463"; chr3 rmsk exon 74550841 74551293 1835 + . gene_id "ERV316A3_3p12.3a"; transcript_id "ERV316A3_3p12.3a"; locus "ERV316A3_3p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0471"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "-842"; repStart "3868"; ### ERV316A3_3p12.3b ### chr3 rmsk gene 74557375 74558370 . + . gene_id "ERV316A3_3p12.3b"; transcript_id "ERV316A3_3p12.3b"; locus "ERV316A3_3p12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0472"; model_cov "588"; model_pct "11.3"; chr3 rmsk exon 74557375 74557732 715 + . gene_id "ERV316A3_3p12.3b"; transcript_id "ERV316A3_3p12.3b"; locus "ERV316A3_3p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0472"; repClass "LTR"; repEnd "4474"; repFamily "ERVL"; repLeft "-752"; repStart "4093"; chr3 rmsk exon 74557762 74557965 427 + . gene_id "ERV316A3_3p12.3b"; transcript_id "ERV316A3_3p12.3b"; locus "ERV316A3_3p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0472"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5019"; chr3 rmsk exon 74557976 74558370 1484 + . gene_id "ERV316A3_3p12.3b"; transcript_id "ERV316A3_3p12.3b"; locus "ERV316A3_3p12.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0472"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "38"; ### HARLEQUIN_3p12.3 ### chr3 rmsk gene 74825023 74831316 . + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0043"; model_cov "5456"; model_pct "79.1"; chr3 rmsk exon 74825023 74825504 4057 + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0043"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 74825505 74826406 6598 + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0043"; repClass "LTR"; repEnd "910"; repFamily "ERV1"; repLeft "-5986"; repStart "1"; chr3 rmsk exon 74826393 74827362 6622 + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0043"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1571"; chr3 rmsk exon 74827362 74830895 24613 + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0043"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "3352"; chr3 rmsk exon 74830896 74831316 3081 + . gene_id "HARLEQUIN_3p12.3"; transcript_id "HARLEQUIN_3p12.3"; locus "HARLEQUIN_3p12.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0043"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_3p12.3a ### chr3 rmsk gene 74872833 74874453 . - . gene_id "HERVW_3p12.3a"; transcript_id "HERVW_3p12.3a"; locus "HERVW_3p12.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0061"; model_cov "1288"; model_pct "14.9"; chr3 rmsk exon 74872833 74873157 2568 - . gene_id "HERVW_3p12.3a"; transcript_id "HERVW_3p12.3a"; locus "HERVW_3p12.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0061"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr3 rmsk exon 74873158 74873449 2310 - . gene_id "HERVW_3p12.3a"; transcript_id "HERVW_3p12.3a"; locus "HERVW_3p12.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0061"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 74873472 74874453 31093 - . gene_id "HERVW_3p12.3a"; transcript_id "HERVW_3p12.3a"; locus "HERVW_3p12.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0061"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5022"; repStart "-2607"; ### HERVW_3p12.3b ### chr3 rmsk gene 74874536 74878086 . - . gene_id "HERVW_3p12.3b"; transcript_id "HERVW_3p12.3b"; locus "HERVW_3p12.3b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0062"; model_cov "3110"; model_pct "36.1"; chr3 rmsk exon 74874536 74877551 31093 - . gene_id "HERVW_3p12.3b"; transcript_id "HERVW_3p12.3b"; locus "HERVW_3p12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0062"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2950"; repStart "-2607"; chr3 rmsk exon 74877539 74877580 282 - . gene_id "HERVW_3p12.3b"; transcript_id "HERVW_3p12.3b"; locus "HERVW_3p12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0062"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "2"; repStart "-8583"; chr3 rmsk exon 74877581 74878086 3751 - . gene_id "HERVW_3p12.3b"; transcript_id "HERVW_3p12.3b"; locus "HERVW_3p12.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0062"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERV4_3p12.3 ### chr3 rmsk gene 75117732 75119274 . + . gene_id "HERV4_3p12.3"; transcript_id "HERV4_3p12.3"; locus "HERV4_3p12.3"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0022"; model_cov "855"; model_pct "13.1"; chr3 rmsk exon 75117732 75117941 393 + . gene_id "HERV4_3p12.3"; transcript_id "HERV4_3p12.3"; locus "HERV4_3p12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0022"; repClass "LTR"; repEnd "6130"; repFamily "ERV1"; repLeft "-409"; repStart "5914"; chr3 rmsk exon 75118081 75118449 1935 + . gene_id "HERV4_3p12.3"; transcript_id "HERV4_3p12.3"; locus "HERV4_3p12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0022"; repClass "LTR"; repEnd "6236"; repFamily "ERV1"; repLeft "-303"; repStart "5597"; chr3 rmsk exon 75118452 75118538 1208 + . gene_id "HERV4_3p12.3"; transcript_id "HERV4_3p12.3"; locus "HERV4_3p12.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0022"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-548"; repStart "1"; chr3 rmsk exon 75118898 75119274 1426 + . gene_id "HERV4_3p12.3"; transcript_id "HERV4_3p12.3"; locus "HERV4_3p12.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0022"; repClass "LTR"; repEnd "630"; repFamily "ERV1"; repLeft "-4"; repStart "87"; ### HERVE_3p12.3a ### chr3 rmsk gene 75136182 75144865 . + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0025"; model_cov "7826"; model_pct "100.0"; chr3 rmsk exon 75136182 75136355 439 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "-263"; repStart "44"; chr3 rmsk exon 75136376 75136585 1330 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "292"; chr3 rmsk exon 75136586 75136956 2152 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-7464"; repStart "-33"; chr3 rmsk exon 75137032 75137184 292 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "670"; repFamily "ERV1"; repLeft "-7143"; repStart "523"; chr3 rmsk exon 75137207 75144472 42909 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "7809"; repFamily "ERV1"; repLeft "-4"; repStart "512"; chr3 rmsk exon 75144477 75144649 448 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "-263"; repStart "45"; chr3 rmsk exon 75144670 75144865 1185 + . gene_id "HERVE_3p12.3a"; transcript_id "HERVE_3p12.3a"; locus "HERVE_3p12.3a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0025"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "292"; ### MER61_3p12.3a ### chr3 rmsk gene 75208660 75209517 . + . gene_id "MER61_3p12.3a"; transcript_id "MER61_3p12.3a"; locus "MER61_3p12.3a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0087"; model_cov "548"; model_pct "10.5"; chr3 rmsk exon 75208660 75209168 2353 + . gene_id "MER61_3p12.3a"; transcript_id "MER61_3p12.3a"; locus "MER61_3p12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0087"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4669"; chr3 rmsk exon 75209186 75209517 2187 + . gene_id "MER61_3p12.3a"; transcript_id "MER61_3p12.3a"; locus "MER61_3p12.3a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0087"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "86"; ### HERVE_3p12.3b ### chr3 rmsk gene 75361875 75365929 . - . gene_id "HERVE_3p12.3b"; transcript_id "HERVE_3p12.3b"; locus "HERVE_3p12.3b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0026"; model_cov "4057"; model_pct "51.9"; chr3 rmsk exon 75361875 75365929 29350 - . gene_id "HERVE_3p12.3b"; transcript_id "HERVE_3p12.3b"; locus "HERVE_3p12.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0026"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVH_3p12.3a ### chr3 rmsk gene 75469906 75475683 . - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0255"; model_cov "5110"; model_pct "66.3"; chr3 rmsk exon 75469906 75470304 2565 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; chr3 rmsk exon 75470307 75470683 2365 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 75470684 75470895 1333 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 75470900 75471558 4387 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr3 rmsk exon 75471561 75472410 6030 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr3 rmsk exon 75472397 75475332 19908 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr3 rmsk exon 75475335 75475683 1981 - . gene_id "HERVH_3p12.3a"; transcript_id "HERVH_3p12.3a"; locus "HERVH_3p12.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0255"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_3p12.3 ### chr3 rmsk gene 75500237 75507467 . - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0006"; model_cov "6263"; model_pct "69.8"; chr3 rmsk exon 75500237 75500796 4374 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 75500797 75501113 2245 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr3 rmsk exon 75501111 75502092 6676 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "6803"; repStart "-1192"; chr3 rmsk exon 75502090 75503728 6333 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "6603"; repFamily "ERV1"; repLeft "4870"; repStart "-2375"; chr3 rmsk exon 75503738 75506913 22427 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr3 rmsk exon 75506916 75507467 4109 - . gene_id "HERVS71_3p12.3"; transcript_id "HERVS71_3p12.3"; locus "HERVS71_3p12.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0006"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML2_3p12.3 ### chr3 rmsk gene 75551314 75559999 . + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0022"; model_cov "7535"; model_pct "100.0"; chr3 rmsk exon 75551314 75551382 580 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "965"; chr3 rmsk exon 75551383 75558968 37160 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 75558969 75559999 8382 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_3p12.3a ### chr3 rmsk gene 75581982 75582578 . + . gene_id "ERVLB4_3p12.3a"; transcript_id "ERVLB4_3p12.3a"; locus "ERVLB4_3p12.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0316"; model_cov "631"; model_pct "11.0"; chr3 rmsk exon 75581982 75582578 2893 + . gene_id "ERVLB4_3p12.3a"; transcript_id "ERVLB4_3p12.3a"; locus "ERVLB4_3p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0316"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_3p12.3c ### chr3 rmsk gene 75604058 75608125 . - . gene_id "HERVE_3p12.3c"; transcript_id "HERVE_3p12.3c"; locus "HERVE_3p12.3c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0027"; model_cov "4057"; model_pct "51.9"; chr3 rmsk exon 75604058 75608125 27791 - . gene_id "HERVE_3p12.3c"; transcript_id "HERVE_3p12.3c"; locus "HERVE_3p12.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0027"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### PRIMA41_3p12.3 ### chr3 rmsk gene 75705270 75707459 . + . gene_id "PRIMA41_3p12.3"; transcript_id "PRIMA41_3p12.3"; locus "PRIMA41_3p12.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0031"; model_cov "2208"; model_pct "28.5"; chr3 rmsk exon 75705270 75707459 4405 + . gene_id "PRIMA41_3p12.3"; transcript_id "PRIMA41_3p12.3"; locus "PRIMA41_3p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0031"; repClass "LTR"; repEnd "3477"; repFamily "ERV1"; repLeft "-4279"; repStart "1269"; ### MER101_3p12.3 ### chr3 rmsk gene 75709487 75712912 . - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0093"; model_cov "4211"; model_pct "63.4"; chr3 rmsk exon 75709487 75709806 1803 - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0093"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "2"; repStart "-121"; chr3 rmsk exon 75709808 75710430 2362 - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0093"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "5995"; repStart "0"; chr3 rmsk exon 75710429 75711514 3525 - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0093"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "3913"; repStart "-1237"; chr3 rmsk exon 75711758 75712018 2030 - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0093"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "4646"; repStart "-1697"; chr3 rmsk exon 75712004 75712912 3320 - . gene_id "MER101_3p12.3"; transcript_id "MER101_3p12.3"; locus "MER101_3p12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0093"; repClass "LTR"; repEnd "3522"; repFamily "ERV1"; repLeft "1740"; repStart "-3117"; ### HML3_3p12.3 ### chr3 rmsk gene 75806221 75810138 . - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0040"; model_cov "3347"; model_pct "55.6"; chr3 rmsk exon 75806221 75806546 2261 - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0040"; repClass "LTR"; repEnd "4917"; repFamily "ERVK"; repLeft "4595"; repStart "-1104"; chr3 rmsk exon 75806548 75806776 1789 - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0040"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr3 rmsk exon 75806777 75809073 21243 - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0040"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "515"; repStart "-3223"; chr3 rmsk exon 75809130 75809633 21243 - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0040"; repClass "LTR"; repEnd "514"; repFamily "ERVK"; repLeft "1"; repStart "-5507"; chr3 rmsk exon 75809634 75810138 4113 - . gene_id "HML3_3p12.3"; transcript_id "HML3_3p12.3"; locus "HML3_3p12.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0040"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_3p12.3 ### chr3 rmsk gene 75810139 75812281 . - . gene_id "HML1_3p12.3"; transcript_id "HML1_3p12.3"; locus "HML1_3p12.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0017"; model_cov "1888"; model_pct "31.0"; chr3 rmsk exon 75810139 75811997 13736 - . gene_id "HML1_3p12.3"; transcript_id "HML1_3p12.3"; locus "HML1_3p12.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0017"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "1"; repStart "-4207"; chr3 rmsk exon 75811998 75812281 2011 - . gene_id "HML1_3p12.3"; transcript_id "HML1_3p12.3"; locus "HML1_3p12.3"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0017"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_3p12.3b ### chr3 rmsk gene 76220715 76224660 . - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0319"; model_cov "2525"; model_pct "44.2"; chr3 rmsk exon 76220715 76221324 2067 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "5432"; repFamily "ERVL"; repLeft "4713"; repStart "-282"; chr3 rmsk exon 76221321 76221371 304 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "4806"; repFamily "ERVL"; repLeft "4756"; repStart "-908"; chr3 rmsk exon 76221368 76221418 250 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "4872"; repFamily "ERVL"; repLeft "4822"; repStart "-842"; chr3 rmsk exon 76221462 76222146 3901 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "4806"; repFamily "ERVL"; repLeft "4117"; repStart "-908"; chr3 rmsk exon 76222703 76222760 4710 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "1065"; repFamily "ERVL"; repLeft "1008"; repStart "-4649"; chr3 rmsk exon 76223055 76224069 4710 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "1007"; repFamily "ERVL"; repLeft "47"; repStart "-4707"; chr3 rmsk exon 76224233 76224660 1652 - . gene_id "ERVLB4_3p12.3b"; transcript_id "ERVLB4_3p12.3b"; locus "ERVLB4_3p12.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0319"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "6"; repStart "-110"; ### HERVH_3p12.3b ### chr3 rmsk gene 76534692 76538146 . - . gene_id "HERVH_3p12.3b"; transcript_id "HERVH_3p12.3b"; locus "HERVH_3p12.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0256"; model_cov "3266"; model_pct "42.3"; chr3 rmsk exon 76534692 76534902 833 - . gene_id "HERVH_3p12.3b"; transcript_id "HERVH_3p12.3b"; locus "HERVH_3p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0256"; repClass "LTR"; repEnd "4729"; repFamily "ERV1"; repLeft "4518"; repStart "-2984"; chr3 rmsk exon 76534892 76537660 7773 - . gene_id "HERVH_3p12.3b"; transcript_id "HERVH_3p12.3b"; locus "HERVH_3p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0256"; repClass "LTR"; repEnd "3072"; repFamily "ERV1"; repLeft "17"; repStart "-4641"; chr3 rmsk exon 76537678 76538146 3370 - . gene_id "HERVH_3p12.3b"; transcript_id "HERVH_3p12.3b"; locus "HERVH_3p12.3b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0256"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3p12.3c ### chr3 rmsk gene 77670360 77671460 . + . gene_id "ERV316A3_3p12.3c"; transcript_id "ERV316A3_3p12.3c"; locus "ERV316A3_3p12.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0474"; model_cov "1147"; model_pct "21.9"; chr3 rmsk exon 77670360 77670491 344 + . gene_id "ERV316A3_3p12.3c"; transcript_id "ERV316A3_3p12.3c"; locus "ERV316A3_3p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0474"; repClass "LTR"; repEnd "867"; repFamily "ERVL"; repLeft "-4359"; repStart "734"; chr3 rmsk exon 77670577 77671460 1162 + . gene_id "ERV316A3_3p12.3c"; transcript_id "ERV316A3_3p12.3c"; locus "ERV316A3_3p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0474"; repClass "LTR"; repEnd "2107"; repFamily "ERVL"; repLeft "-3119"; repStart "1093"; ### ERV316A3_3p12.3d ### chr3 rmsk gene 77671522 77673728 . + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0475"; model_cov "1743"; model_pct "33.4"; chr3 rmsk exon 77671522 77671724 288 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "-3236"; repStart "1762"; chr3 rmsk exon 77671858 77672358 998 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "3715"; repFamily "ERVL"; repLeft "-1511"; repStart "3146"; chr3 rmsk exon 77672362 77672997 1295 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "4578"; repFamily "ERVL"; repLeft "-648"; repStart "3953"; chr3 rmsk exon 77673038 77673234 309 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "4694"; repFamily "ERVL"; repLeft "-532"; repStart "4492"; chr3 rmsk exon 77673262 77673382 395 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "5051"; repFamily "ERVL"; repLeft "-175"; repStart "4932"; chr3 rmsk exon 77673569 77673728 341 + . gene_id "ERV316A3_3p12.3d"; transcript_id "ERV316A3_3p12.3d"; locus "ERV316A3_3p12.3d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0475"; repClass "LTR"; repEnd "167"; repFamily "ERVL"; repLeft "-322"; repStart "4"; ### HERVL_3p12.3 ### chr3 rmsk gene 77731061 77737070 . - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0261"; model_cov "5093"; model_pct "90.1"; chr3 rmsk exon 77731061 77731109 3012 - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0261"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "388"; repStart "0"; chr3 rmsk exon 77731193 77731581 3012 - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0261"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "2"; repStart "-57"; chr3 rmsk exon 77731582 77734382 20486 - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0261"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2814"; repStart "0"; chr3 rmsk exon 77734376 77736629 16541 - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0261"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "1"; repStart "-3400"; chr3 rmsk exon 77736630 77737070 3259 - . gene_id "HERVL_3p12.3"; transcript_id "HERVL_3p12.3"; locus "HERVL_3p12.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0261"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_3p12.3c ### chr3 rmsk gene 77889215 77890530 . + . gene_id "ERVLB4_3p12.3c"; transcript_id "ERVLB4_3p12.3c"; locus "ERVLB4_3p12.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0321"; model_cov "984"; model_pct "17.2"; chr3 rmsk exon 77889215 77889936 5598 + . gene_id "ERVLB4_3p12.3c"; transcript_id "ERVLB4_3p12.3c"; locus "ERVLB4_3p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0321"; repClass "LTR"; repEnd "1632"; repFamily "ERVL"; repLeft "-4082"; repStart "899"; chr3 rmsk exon 77890299 77890530 5598 + . gene_id "ERVLB4_3p12.3c"; transcript_id "ERVLB4_3p12.3c"; locus "ERVLB4_3p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0321"; repClass "LTR"; repEnd "1884"; repFamily "ERVL"; repLeft "-3830"; repStart "1633"; ### HUERSP3_3p12.3 ### chr3 rmsk gene 77919506 77923855 . + . gene_id "HUERSP3_3p12.3"; transcript_id "HUERSP3_3p12.3"; locus "HUERSP3_3p12.3"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0038"; model_cov "3349"; model_pct "37.5"; chr3 rmsk exon 77919506 77919926 1886 + . gene_id "HUERSP3_3p12.3"; transcript_id "HUERSP3_3p12.3"; locus "HUERSP3_3p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0038"; repClass "LTR"; repEnd "2262"; repFamily "ERV1"; repLeft "-6657"; repStart "1843"; chr3 rmsk exon 77920262 77921650 10289 + . gene_id "HUERSP3_3p12.3"; transcript_id "HUERSP3_3p12.3"; locus "HUERSP3_3p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0038"; repClass "LTR"; repEnd "2856"; repFamily "ERV1"; repLeft "-6063"; repStart "1458"; chr3 rmsk exon 77922309 77923855 10289 + . gene_id "HUERSP3_3p12.3"; transcript_id "HUERSP3_3p12.3"; locus "HUERSP3_3p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0038"; repClass "LTR"; repEnd "4389"; repFamily "ERV1"; repLeft "-4530"; repStart "2857"; ### MER4B_3p12.3 ### chr3 rmsk gene 77993319 77994432 . + . gene_id "MER4B_3p12.3"; transcript_id "MER4B_3p12.3"; locus "MER4B_3p12.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0089"; model_cov "1075"; model_pct "15.9"; chr3 rmsk exon 77993319 77994324 6581 + . gene_id "MER4B_3p12.3"; transcript_id "MER4B_3p12.3"; locus "MER4B_3p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0089"; repClass "LTR"; repEnd "6186"; repFamily "ERV1"; repLeft "-572"; repStart "5189"; chr3 rmsk exon 77994346 77994432 514 + . gene_id "MER4B_3p12.3"; transcript_id "MER4B_3p12.3"; locus "MER4B_3p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0089"; repClass "LTR"; repEnd "6606"; repFamily "ERV1"; repLeft "-152"; repStart "6528"; ### ERVLB4_3p12.3d ### chr3 rmsk gene 78196961 78198455 . - . gene_id "ERVLB4_3p12.3d"; transcript_id "ERVLB4_3p12.3d"; locus "ERVLB4_3p12.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0322"; model_cov "892"; model_pct "15.6"; chr3 rmsk exon 78196961 78197005 243 - . gene_id "ERVLB4_3p12.3d"; transcript_id "ERVLB4_3p12.3d"; locus "ERVLB4_3p12.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0322"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "508"; repStart "0"; chr3 rmsk exon 78197057 78197561 2242 - . gene_id "ERVLB4_3p12.3d"; transcript_id "ERVLB4_3p12.3d"; locus "ERVLB4_3p12.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0322"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "-36"; chr3 rmsk exon 78197562 78198369 4069 - . gene_id "ERVLB4_3p12.3d"; transcript_id "ERVLB4_3p12.3d"; locus "ERVLB4_3p12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0322"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4911"; repStart "0"; chr3 rmsk exon 78198371 78198455 515 - . gene_id "ERVLB4_3p12.3d"; transcript_id "ERVLB4_3p12.3d"; locus "ERVLB4_3p12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0322"; repClass "LTR"; repEnd "118"; repFamily "ERVL"; repLeft "29"; repStart "-5596"; ### MER61_3p12.3b ### chr3 rmsk gene 78246303 78249765 . + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0088"; model_cov "2831"; model_pct "54.3"; chr3 rmsk exon 78246303 78246645 2111 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0088"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 78246647 78247212 2550 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0088"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "2"; chr3 rmsk exon 78247193 78248685 9833 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0088"; repClass "LTR"; repEnd "2863"; repFamily "ERV1"; repLeft "-2354"; repStart "1396"; chr3 rmsk exon 78248682 78248757 472 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0088"; repClass "LTR"; repEnd "4572"; repFamily "ERV1"; repLeft "-645"; repStart "4498"; chr3 rmsk exon 78248749 78249426 2447 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0088"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4491"; chr3 rmsk exon 78249428 78249765 2106 + . gene_id "MER61_3p12.3b"; transcript_id "MER61_3p12.3b"; locus "MER61_3p12.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0088"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL40_3p12.3 ### chr3 rmsk gene 78277098 78278421 . - . gene_id "HERVL40_3p12.3"; transcript_id "HERVL40_3p12.3"; locus "HERVL40_3p12.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0066"; model_cov "1151"; model_pct "20.8"; chr3 rmsk exon 78277098 78277327 563 - . gene_id "HERVL40_3p12.3"; transcript_id "HERVL40_3p12.3"; locus "HERVL40_3p12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0066"; repClass "LTR"; repEnd "1984"; repFamily "ERVL"; repLeft "1741"; repStart "-3546"; chr3 rmsk exon 78277428 78277557 331 - . gene_id "HERVL40_3p12.3"; transcript_id "HERVL40_3p12.3"; locus "HERVL40_3p12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0066"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "1572"; repStart "-3827"; chr3 rmsk exon 78277679 78278421 1657 - . gene_id "HERVL40_3p12.3"; transcript_id "HERVL40_3p12.3"; locus "HERVL40_3p12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0066"; repClass "LTR"; repEnd "1358"; repFamily "ERVL"; repLeft "581"; repStart "-4172"; ### HERVH_3p12.3c ### chr3 rmsk gene 78323654 78327784 . + . gene_id "HERVH_3p12.3c"; transcript_id "HERVH_3p12.3c"; locus "HERVH_3p12.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0257"; model_cov "3734"; model_pct "48.4"; chr3 rmsk exon 78323654 78324104 3490 + . gene_id "HERVH_3p12.3c"; transcript_id "HERVH_3p12.3c"; locus "HERVH_3p12.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0257"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 78324107 78327347 18424 + . gene_id "HERVH_3p12.3c"; transcript_id "HERVH_3p12.3c"; locus "HERVH_3p12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0257"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr3 rmsk exon 78327347 78327784 2806 + . gene_id "HERVH_3p12.3c"; transcript_id "HERVH_3p12.3c"; locus "HERVH_3p12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0257"; repClass "LTR"; repEnd "3945"; repFamily "ERV1"; repLeft "-3768"; repStart "3500"; ### ERVLB4_3p12.3e ### chr3 rmsk gene 78358198 78360135 . - . gene_id "ERVLB4_3p12.3e"; transcript_id "ERVLB4_3p12.3e"; locus "ERVLB4_3p12.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0323"; model_cov "1235"; model_pct "21.6"; chr3 rmsk exon 78358198 78358627 1941 - . gene_id "ERVLB4_3p12.3e"; transcript_id "ERVLB4_3p12.3e"; locus "ERVLB4_3p12.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0323"; repClass "LTR"; repEnd "477"; repFamily "ERVL"; repLeft "1"; repStart "-79"; chr3 rmsk exon 78358628 78359001 29129 - . gene_id "ERVLB4_3p12.3e"; transcript_id "ERVLB4_3p12.3e"; locus "ERVLB4_3p12.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0323"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5349"; repStart "0"; chr3 rmsk exon 78359305 78360135 29129 - . gene_id "ERVLB4_3p12.3e"; transcript_id "ERVLB4_3p12.3e"; locus "ERVLB4_3p12.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0323"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "4478"; repStart "-366"; ### ERVLB4_3p12.3f ### chr3 rmsk gene 78360180 78365915 . - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0324"; model_cov "4472"; model_pct "78.3"; chr3 rmsk exon 78360180 78360319 29129 - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0324"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "5201"; repStart "-366"; chr3 rmsk exon 78360606 78363105 29129 - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0324"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "1796"; repStart "-1385"; chr3 rmsk exon 78363414 78363557 29129 - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0324"; repClass "LTR"; repEnd "1795"; repFamily "ERVL"; repLeft "1667"; repStart "-3919"; chr3 rmsk exon 78363868 78365478 29129 - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0324"; repClass "LTR"; repEnd "1666"; repFamily "ERVL"; repLeft "2"; repStart "-4048"; chr3 rmsk exon 78365486 78365915 1839 - . gene_id "ERVLB4_3p12.3f"; transcript_id "ERVLB4_3p12.3f"; locus "ERVLB4_3p12.3f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0324"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "1"; repStart "-75"; ### HERVH_3p12.3d ### chr3 rmsk gene 78581212 78588919 . - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0258"; model_cov "4926"; model_pct "63.9"; chr3 rmsk exon 78581212 78581665 3326 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 78581666 78582041 2306 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr3 rmsk exon 78582044 78582271 1196 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 78582273 78582450 996 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4972"; repStart "-2564"; chr3 rmsk exon 78584333 78584831 3321 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "4986"; repFamily "ERV1"; repLeft "4488"; repStart "-2727"; chr3 rmsk exon 78584834 78585338 3190 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 78585329 78585478 949 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 78585458 78588469 19196 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 78588472 78588919 3321 - . gene_id "HERVH_3p12.3d"; transcript_id "HERVH_3p12.3d"; locus "HERVH_3p12.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0258"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVK11_3p12.3 ### chr3 rmsk gene 79051663 79060592 . + . gene_id "HERVK11_3p12.3"; transcript_id "HERVK11_3p12.3"; locus "HERVK11_3p12.3"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0019"; model_cov "7028"; model_pct "88.4"; chr3 rmsk exon 79051663 79052740 5890 + . gene_id "HERVK11_3p12.3"; transcript_id "HERVK11_3p12.3"; locus "HERVK11_3p12.3"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0019"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr3 rmsk exon 79052746 79057310 35673 + . gene_id "HERVK11_3p12.3"; transcript_id "HERVK11_3p12.3"; locus "HERVK11_3p12.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0019"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "1"; chr3 rmsk exon 79057309 79059514 9742 + . gene_id "HERVK11_3p12.3"; transcript_id "HERVK11_3p12.3"; locus "HERVK11_3p12.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0019"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5525"; chr3 rmsk exon 79059515 79060592 5807 + . gene_id "HERVK11_3p12.3"; transcript_id "HERVK11_3p12.3"; locus "HERVK11_3p12.3"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0019"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### ERVLE_3p12.3 ### chr3 rmsk gene 79111643 79116078 . + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0740"; model_cov "1825"; model_pct "32.2"; chr3 rmsk exon 79111643 79111908 752 + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0740"; repClass "LTR"; repEnd "1155"; repFamily "ERVL"; repLeft "-4512"; repStart "887"; chr3 rmsk exon 79113338 79113485 1607 + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0740"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "-3412"; repStart "2069"; chr3 rmsk exon 79113776 79113891 1607 + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0740"; repClass "LTR"; repEnd "2366"; repFamily "ERVL"; repLeft "-3301"; repStart "2241"; chr3 rmsk exon 79114245 79115209 1607 + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0740"; repClass "LTR"; repEnd "3414"; repFamily "ERVL"; repLeft "-2253"; repStart "2320"; chr3 rmsk exon 79115929 79116078 269 + . gene_id "ERVLE_3p12.3"; transcript_id "ERVLE_3p12.3"; locus "ERVLE_3p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0740"; repClass "LTR"; repEnd "4663"; repFamily "ERVL"; repLeft "-1004"; repStart "4511"; ### HERVH_3p12.3e ### chr3 rmsk gene 79618310 79621442 . + . gene_id "HERVH_3p12.3e"; transcript_id "HERVH_3p12.3e"; locus "HERVH_3p12.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0259"; model_cov "2605"; model_pct "33.8"; chr3 rmsk exon 79618310 79618726 2062 + . gene_id "HERVH_3p12.3e"; transcript_id "HERVH_3p12.3e"; locus "HERVH_3p12.3e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0259"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 79618734 79619204 873 + . gene_id "HERVH_3p12.3e"; transcript_id "HERVH_3p12.3e"; locus "HERVH_3p12.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0259"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "63"; chr3 rmsk exon 79619263 79621232 9983 + . gene_id "HERVH_3p12.3e"; transcript_id "HERVH_3p12.3e"; locus "HERVH_3p12.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0259"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-4704"; repStart "800"; chr3 rmsk exon 79621233 79621442 1403 + . gene_id "HERVH_3p12.3e"; transcript_id "HERVH_3p12.3e"; locus "HERVH_3p12.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0259"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "241"; ### ERV316A3_3p12.3e ### chr3 rmsk gene 79659712 79661388 . + . gene_id "ERV316A3_3p12.3e"; transcript_id "ERV316A3_3p12.3e"; locus "ERV316A3_3p12.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0476"; model_cov "1301"; model_pct "24.9"; chr3 rmsk exon 79659712 79660850 2132 + . gene_id "ERV316A3_3p12.3e"; transcript_id "ERV316A3_3p12.3e"; locus "ERV316A3_3p12.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0476"; repClass "LTR"; repEnd "4975"; repFamily "ERVL"; repLeft "-251"; repStart "3807"; chr3 rmsk exon 79660949 79661070 335 + . gene_id "ERV316A3_3p12.3e"; transcript_id "ERV316A3_3p12.3e"; locus "ERV316A3_3p12.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0476"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5093"; chr3 rmsk exon 79661073 79661280 564 + . gene_id "ERV316A3_3p12.3e"; transcript_id "ERV316A3_3p12.3e"; locus "ERV316A3_3p12.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0476"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "-234"; repStart "3"; chr3 rmsk exon 79661283 79661388 356 + . gene_id "ERV316A3_3p12.3e"; transcript_id "ERV316A3_3p12.3e"; locus "ERV316A3_3p12.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0476"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "338"; ### HERVEA_3p12.3 ### chr3 rmsk gene 79772862 79780980 . + . gene_id "HERVEA_3p12.3"; transcript_id "HERVEA_3p12.3"; locus "HERVEA_3p12.3"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0022"; model_cov "7273"; model_pct "92.7"; chr3 rmsk exon 79772862 79773326 3347 + . gene_id "HERVEA_3p12.3"; transcript_id "HERVEA_3p12.3"; locus "HERVEA_3p12.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0022"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 79773347 79777503 32951 + . gene_id "HERVEA_3p12.3"; transcript_id "HERVEA_3p12.3"; locus "HERVEA_3p12.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0022"; repClass "LTR"; repEnd "4239"; repFamily "ERV1"; repLeft "-3608"; repStart "3"; chr3 rmsk exon 79777502 79780524 24826 + . gene_id "HERVEA_3p12.3"; transcript_id "HERVEA_3p12.3"; locus "HERVEA_3p12.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0022"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "4810"; chr3 rmsk exon 79780526 79780980 3299 + . gene_id "HERVEA_3p12.3"; transcript_id "HERVEA_3p12.3"; locus "HERVEA_3p12.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0022"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_3p12.2a ### chr3 rmsk gene 79855742 79860633 . + . gene_id "ERV316A3_3p12.2a"; transcript_id "ERV316A3_3p12.2a"; locus "ERV316A3_3p12.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0477"; model_cov "4568"; model_pct "87.4"; chr3 rmsk exon 79855742 79860265 10324 + . gene_id "ERV316A3_3p12.2a"; transcript_id "ERV316A3_3p12.2a"; locus "ERV316A3_3p12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0477"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "658"; chr3 rmsk exon 79860266 79860439 547 + . gene_id "ERV316A3_3p12.2a"; transcript_id "ERV316A3_3p12.2a"; locus "ERV316A3_3p12.2a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0477"; repClass "LTR"; repEnd "181"; repFamily "ERVL"; repLeft "-241"; repStart "1"; chr3 rmsk exon 79860444 79860633 459 + . gene_id "ERV316A3_3p12.2a"; transcript_id "ERV316A3_3p12.2a"; locus "ERV316A3_3p12.2a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0477"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-92"; repStart "128"; ### ERVL_3p12.2 ### chr3 rmsk gene 79978171 79980974 . - . gene_id "ERVL_3p12.2"; transcript_id "ERVL_3p12.2"; locus "ERVL_3p12.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0077"; model_cov "2436"; model_pct "42.3"; chr3 rmsk exon 79978171 79978590 1416 - . gene_id "ERVL_3p12.2"; transcript_id "ERVL_3p12.2"; locus "ERVL_3p12.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0077"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "28"; repStart "-79"; chr3 rmsk exon 79978606 79979832 6742 - . gene_id "ERVL_3p12.2"; transcript_id "ERVL_3p12.2"; locus "ERVL_3p12.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0077"; repClass "LTR"; repEnd "5751"; repFamily "ERVL"; repLeft "4460"; repStart "-6"; chr3 rmsk exon 79979831 79980974 5753 - . gene_id "ERVL_3p12.2"; transcript_id "ERVL_3p12.2"; locus "ERVL_3p12.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0077"; repClass "LTR"; repEnd "4601"; repFamily "ERVL"; repLeft "3456"; repStart "-1156"; ### ERVLE_3p12.2a ### chr3 rmsk gene 80077098 80077951 . + . gene_id "ERVLE_3p12.2a"; transcript_id "ERVLE_3p12.2a"; locus "ERVLE_3p12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0743"; model_cov "595"; model_pct "10.5"; chr3 rmsk exon 80077098 80077344 341 + . gene_id "ERVLE_3p12.2a"; transcript_id "ERVLE_3p12.2a"; locus "ERVLE_3p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0743"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "-4018"; repStart "1394"; chr3 rmsk exon 80077625 80077951 306 + . gene_id "ERVLE_3p12.2a"; transcript_id "ERVLE_3p12.2a"; locus "ERVLE_3p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0743"; repClass "LTR"; repEnd "4708"; repFamily "ERVL"; repLeft "-959"; repStart "4368"; ### ERVLE_3p12.2b ### chr3 rmsk gene 80180559 80182759 . + . gene_id "ERVLE_3p12.2b"; transcript_id "ERVLE_3p12.2b"; locus "ERVLE_3p12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0745"; model_cov "2037"; model_pct "35.9"; chr3 rmsk exon 80180559 80181809 1615 + . gene_id "ERVLE_3p12.2b"; transcript_id "ERVLE_3p12.2b"; locus "ERVLE_3p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0745"; repClass "LTR"; repEnd "4269"; repFamily "ERVL"; repLeft "-1398"; repStart "2975"; chr3 rmsk exon 80181924 80182084 343 + . gene_id "ERVLE_3p12.2b"; transcript_id "ERVLE_3p12.2b"; locus "ERVLE_3p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0745"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "-789"; repStart "4701"; chr3 rmsk exon 80182152 80182430 418 + . gene_id "ERVLE_3p12.2b"; transcript_id "ERVLE_3p12.2b"; locus "ERVLE_3p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0745"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "-470"; repStart "4907"; chr3 rmsk exon 80182483 80182759 310 + . gene_id "ERVLE_3p12.2b"; transcript_id "ERVLE_3p12.2b"; locus "ERVLE_3p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0745"; repClass "LTR"; repEnd "5549"; repFamily "ERVL"; repLeft "-118"; repStart "5273"; ### MER34B_3p12.2a ### chr3 rmsk gene 80202165 80202838 . + . gene_id "MER34B_3p12.2a"; transcript_id "MER34B_3p12.2a"; locus "MER34B_3p12.2a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0061"; model_cov "558"; model_pct "10.4"; chr3 rmsk exon 80202165 80202301 554 + . gene_id "MER34B_3p12.2a"; transcript_id "MER34B_3p12.2a"; locus "MER34B_3p12.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0061"; repClass "LTR"; repEnd "852"; repFamily "ERV1"; repLeft "-4504"; repStart "717"; chr3 rmsk exon 80202448 80202838 855 + . gene_id "MER34B_3p12.2a"; transcript_id "MER34B_3p12.2a"; locus "MER34B_3p12.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0061"; repClass "LTR"; repEnd "1886"; repFamily "ERV1"; repLeft "-3470"; repStart "1463"; ### MER34B_3p12.2b ### chr3 rmsk gene 80203195 80204672 . + . gene_id "MER34B_3p12.2b"; transcript_id "MER34B_3p12.2b"; locus "MER34B_3p12.2b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0062"; model_cov "1113"; model_pct "20.8"; chr3 rmsk exon 80203195 80203719 787 + . gene_id "MER34B_3p12.2b"; transcript_id "MER34B_3p12.2b"; locus "MER34B_3p12.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0062"; repClass "LTR"; repEnd "1212"; repFamily "ERV1"; repLeft "-4144"; repStart "691"; chr3 rmsk exon 80204028 80204672 1890 + . gene_id "MER34B_3p12.2b"; transcript_id "MER34B_3p12.2b"; locus "MER34B_3p12.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0062"; repClass "LTR"; repEnd "3292"; repFamily "ERV1"; repLeft "-2064"; repStart "2700"; ### HERV30_3p12.2 ### chr3 rmsk gene 80306978 80312729 . + . gene_id "HERV30_3p12.2"; transcript_id "HERV30_3p12.2"; locus "HERV30_3p12.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0002"; model_cov "4374"; model_pct "53.0"; chr3 rmsk exon 80306978 80307676 5077 + . gene_id "HERV30_3p12.2"; transcript_id "HERV30_3p12.2"; locus "HERV30_3p12.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0002"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 80307677 80311139 26068 + . gene_id "HERV30_3p12.2"; transcript_id "HERV30_3p12.2"; locus "HERV30_3p12.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0002"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "1"; chr3 rmsk exon 80311133 80312033 6089 + . gene_id "HERV30_3p12.2"; transcript_id "HERV30_3p12.2"; locus "HERV30_3p12.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0002"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr3 rmsk exon 80312034 80312729 5242 + . gene_id "HERV30_3p12.2"; transcript_id "HERV30_3p12.2"; locus "HERV30_3p12.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0002"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_3p12.2a ### chr3 rmsk gene 80348682 80349858 . + . gene_id "ERVLB4_3p12.2a"; transcript_id "ERVLB4_3p12.2a"; locus "ERVLB4_3p12.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0325"; model_cov "704"; model_pct "12.3"; chr3 rmsk exon 80348682 80349154 1728 + . gene_id "ERVLB4_3p12.2a"; transcript_id "ERVLB4_3p12.2a"; locus "ERVLB4_3p12.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0325"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 80349155 80349858 3528 + . gene_id "ERVLB4_3p12.2a"; transcript_id "ERVLB4_3p12.2a"; locus "ERVLB4_3p12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0325"; repClass "LTR"; repEnd "705"; repFamily "ERVL"; repLeft "-5009"; repStart "1"; ### HERVH_3p12.2a ### chr3 rmsk gene 80386128 80391440 . + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0260"; model_cov "5116"; model_pct "66.3"; chr3 rmsk exon 80386128 80388298 13041 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "870"; chr3 rmsk exon 80388278 80388725 2763 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3140"; chr3 rmsk exon 80388725 80390120 7880 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4861"; chr3 rmsk exon 80390112 80390517 2104 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr3 rmsk exon 80390511 80391073 3672 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr3 rmsk exon 80391074 80391440 2186 + . gene_id "HERVH_3p12.2a"; transcript_id "HERVH_3p12.2a"; locus "HERVH_3p12.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0260"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3p12.2c ### chr3 rmsk gene 80399022 80401303 . + . gene_id "ERVLE_3p12.2c"; transcript_id "ERVLE_3p12.2c"; locus "ERVLE_3p12.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0746"; model_cov "1831"; model_pct "32.3"; chr3 rmsk exon 80399022 80400468 2073 + . gene_id "ERVLE_3p12.2c"; transcript_id "ERVLE_3p12.2c"; locus "ERVLE_3p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0746"; repClass "LTR"; repEnd "4530"; repFamily "ERVL"; repLeft "-1137"; repStart "2953"; chr3 rmsk exon 80400638 80400793 496 + . gene_id "ERVLE_3p12.2c"; transcript_id "ERVLE_3p12.2c"; locus "ERVLE_3p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0746"; repClass "LTR"; repEnd "4998"; repFamily "ERVL"; repLeft "-669"; repStart "4832"; chr3 rmsk exon 80401218 80401303 321 + . gene_id "ERVLE_3p12.2c"; transcript_id "ERVLE_3p12.2c"; locus "ERVLE_3p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0746"; repClass "LTR"; repEnd "5589"; repFamily "ERVL"; repLeft "-78"; repStart "5501"; ### ERVLE_3p12.2d ### chr3 rmsk gene 80534873 80535884 . + . gene_id "ERVLE_3p12.2d"; transcript_id "ERVLE_3p12.2d"; locus "ERVLE_3p12.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0747"; model_cov "1152"; model_pct "20.3"; chr3 rmsk exon 80534873 80535884 1285 + . gene_id "ERVLE_3p12.2d"; transcript_id "ERVLE_3p12.2d"; locus "ERVLE_3p12.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0747"; repClass "LTR"; repEnd "3201"; repFamily "ERVL"; repLeft "-2466"; repStart "2049"; ### ERVLB4_3p12.2b ### chr3 rmsk gene 80787498 80788979 . + . gene_id "ERVLB4_3p12.2b"; transcript_id "ERVLB4_3p12.2b"; locus "ERVLB4_3p12.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0327"; model_cov "1094"; model_pct "19.1"; chr3 rmsk exon 80787498 80787739 1340 + . gene_id "ERVLB4_3p12.2b"; transcript_id "ERVLB4_3p12.2b"; locus "ERVLB4_3p12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0327"; repClass "LTR"; repEnd "3602"; repFamily "ERVL"; repLeft "-2112"; repStart "3348"; chr3 rmsk exon 80787717 80788205 3939 + . gene_id "ERVLB4_3p12.2b"; transcript_id "ERVLB4_3p12.2b"; locus "ERVLB4_3p12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0327"; repClass "LTR"; repEnd "5388"; repFamily "ERVL"; repLeft "-326"; repStart "4872"; chr3 rmsk exon 80788233 80788553 3939 + . gene_id "ERVLB4_3p12.2b"; transcript_id "ERVLB4_3p12.2b"; locus "ERVLB4_3p12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0327"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5389"; chr3 rmsk exon 80788554 80788979 1445 + . gene_id "ERVLB4_3p12.2b"; transcript_id "ERVLB4_3p12.2b"; locus "ERVLB4_3p12.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0327"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-78"; repStart "1"; ### ERV316A3_3p12.2b ### chr3 rmsk gene 80825941 80828888 . - . gene_id "ERV316A3_3p12.2b"; transcript_id "ERV316A3_3p12.2b"; locus "ERV316A3_3p12.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0478"; model_cov "1826"; model_pct "34.9"; chr3 rmsk exon 80825941 80826399 653 - . gene_id "ERV316A3_3p12.2b"; transcript_id "ERV316A3_3p12.2b"; locus "ERV316A3_3p12.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0478"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 80826400 80826696 2883 - . gene_id "ERV316A3_3p12.2b"; transcript_id "ERV316A3_3p12.2b"; locus "ERV316A3_3p12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0478"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4934"; repStart "0"; chr3 rmsk exon 80827015 80828181 2883 - . gene_id "ERV316A3_3p12.2b"; transcript_id "ERV316A3_3p12.2b"; locus "ERV316A3_3p12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0478"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "3713"; repStart "-293"; chr3 rmsk exon 80828581 80828888 933 - . gene_id "ERV316A3_3p12.2b"; transcript_id "ERV316A3_3p12.2b"; locus "ERV316A3_3p12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0478"; repClass "LTR"; repEnd "3717"; repFamily "ERVL"; repLeft "3403"; repStart "-1509"; ### ERV316A3_3p12.2c ### chr3 rmsk gene 80831826 80835595 . - . gene_id "ERV316A3_3p12.2c"; transcript_id "ERV316A3_3p12.2c"; locus "ERV316A3_3p12.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0479"; model_cov "1281"; model_pct "24.5"; chr3 rmsk exon 80831826 80832101 987 - . gene_id "ERV316A3_3p12.2c"; transcript_id "ERV316A3_3p12.2c"; locus "ERV316A3_3p12.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0479"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "2796"; repStart "-2143"; chr3 rmsk exon 80834163 80835100 1446 - . gene_id "ERV316A3_3p12.2c"; transcript_id "ERV316A3_3p12.2c"; locus "ERV316A3_3p12.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0479"; repClass "LTR"; repEnd "2575"; repFamily "ERVL"; repLeft "1617"; repStart "-2651"; chr3 rmsk exon 80835555 80835595 1446 - . gene_id "ERV316A3_3p12.2c"; transcript_id "ERV316A3_3p12.2c"; locus "ERV316A3_3p12.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0479"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "1580"; repStart "-3610"; ### ERVLE_3p12.2e ### chr3 rmsk gene 80885606 80887604 . - . gene_id "ERVLE_3p12.2e"; transcript_id "ERVLE_3p12.2e"; locus "ERVLE_3p12.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0748"; model_cov "1619"; model_pct "28.6"; chr3 rmsk exon 80885606 80886165 802 - . gene_id "ERVLE_3p12.2e"; transcript_id "ERVLE_3p12.2e"; locus "ERVLE_3p12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0748"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "4366"; repStart "-734"; chr3 rmsk exon 80886205 80886447 425 - . gene_id "ERVLE_3p12.2e"; transcript_id "ERVLE_3p12.2e"; locus "ERVLE_3p12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0748"; repClass "LTR"; repEnd "4265"; repFamily "ERVL"; repLeft "4020"; repStart "-1402"; chr3 rmsk exon 80886483 80886737 1050 - . gene_id "ERVLE_3p12.2e"; transcript_id "ERVLE_3p12.2e"; locus "ERVLE_3p12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0748"; repClass "LTR"; repEnd "3930"; repFamily "ERVL"; repLeft "3674"; repStart "-1737"; chr3 rmsk exon 80887114 80887604 1050 - . gene_id "ERVLE_3p12.2e"; transcript_id "ERVLE_3p12.2e"; locus "ERVLE_3p12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0748"; repClass "LTR"; repEnd "3673"; repFamily "ERVL"; repLeft "3122"; repStart "-1994"; ### HERVL_3p12.2a ### chr3 rmsk gene 80898414 80900095 . - . gene_id "HERVL_3p12.2a"; transcript_id "HERVL_3p12.2a"; locus "HERVL_3p12.2a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0262"; model_cov "1059"; model_pct "18.7"; chr3 rmsk exon 80898414 80898641 365 - . gene_id "HERVL_3p12.2a"; transcript_id "HERVL_3p12.2a"; locus "HERVL_3p12.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0262"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "3970"; repStart "-1451"; chr3 rmsk exon 80899312 80900095 616 - . gene_id "HERVL_3p12.2a"; transcript_id "HERVL_3p12.2a"; locus "HERVL_3p12.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0262"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "2429"; repStart "-2399"; ### ERVLE_3p12.2f ### chr3 rmsk gene 80937332 80939771 . - . gene_id "ERVLE_3p12.2f"; transcript_id "ERVLE_3p12.2f"; locus "ERVLE_3p12.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0749"; model_cov "1405"; model_pct "24.8"; chr3 rmsk exon 80937332 80937604 829 - . gene_id "ERVLE_3p12.2f"; transcript_id "ERVLE_3p12.2f"; locus "ERVLE_3p12.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0749"; repClass "LTR"; repEnd "4025"; repFamily "ERVL"; repLeft "3749"; repStart "-1642"; chr3 rmsk exon 80938100 80938737 1119 - . gene_id "ERVLE_3p12.2f"; transcript_id "ERVLE_3p12.2f"; locus "ERVLE_3p12.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0749"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "3058"; repStart "-1946"; chr3 rmsk exon 80939325 80939771 514 - . gene_id "ERVLE_3p12.2f"; transcript_id "ERVLE_3p12.2f"; locus "ERVLE_3p12.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0749"; repClass "LTR"; repEnd "2012"; repFamily "ERVL"; repLeft "1546"; repStart "-3655"; ### PRIMA41_3p12.2 ### chr3 rmsk gene 81006107 81009643 . - . gene_id "PRIMA41_3p12.2"; transcript_id "PRIMA41_3p12.2"; locus "PRIMA41_3p12.2"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0032"; model_cov "1864"; model_pct "24.0"; chr3 rmsk exon 81006107 81006454 510 - . gene_id "PRIMA41_3p12.2"; transcript_id "PRIMA41_3p12.2"; locus "PRIMA41_3p12.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0032"; repClass "LTR"; repEnd "7523"; repFamily "ERV1"; repLeft "7165"; repStart "-233"; chr3 rmsk exon 81007753 81008554 645 - . gene_id "PRIMA41_3p12.2"; transcript_id "PRIMA41_3p12.2"; locus "PRIMA41_3p12.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0032"; repClass "LTR"; repEnd "6135"; repFamily "ERV1"; repLeft "5340"; repStart "-1621"; chr3 rmsk exon 81008933 81009643 559 - . gene_id "PRIMA41_3p12.2"; transcript_id "PRIMA41_3p12.2"; locus "PRIMA41_3p12.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0032"; repClass "LTR"; repEnd "4886"; repFamily "ERV1"; repLeft "4175"; repStart "-2870"; ### LTR19_3p12.2 ### chr3 rmsk gene 81065742 81070295 . + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0007"; model_cov "3615"; model_pct "64.7"; chr3 rmsk exon 81065742 81066224 3348 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 81066225 81066508 8090 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "311"; repFamily "ERV1"; repLeft "-5275"; repStart "1"; chr3 rmsk exon 81066547 81067393 8090 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "1230"; repFamily "ERV1"; repLeft "-4356"; repStart "312"; chr3 rmsk exon 81067595 81069230 8090 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "3007"; repFamily "ERV1"; repLeft "-2579"; repStart "1231"; chr3 rmsk exon 81069213 81069546 2409 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "4158"; repFamily "ERV1"; repLeft "-1428"; repStart "3820"; chr3 rmsk exon 81069530 81069806 1910 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "5580"; repFamily "ERV1"; repLeft "-6"; repStart "5307"; chr3 rmsk exon 81069813 81070295 3325 + . gene_id "LTR19_3p12.2"; transcript_id "LTR19_3p12.2"; locus "LTR19_3p12.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0007"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_3p12.2d ### chr3 rmsk gene 81231137 81235457 . - . gene_id "ERV316A3_3p12.2d"; transcript_id "ERV316A3_3p12.2d"; locus "ERV316A3_3p12.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0483"; model_cov "2997"; model_pct "57.3"; chr3 rmsk exon 81231137 81231511 471 - . gene_id "ERV316A3_3p12.2d"; transcript_id "ERV316A3_3p12.2d"; locus "ERV316A3_3p12.2d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0483"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 81231513 81232379 2213 - . gene_id "ERV316A3_3p12.2d"; transcript_id "ERV316A3_3p12.2d"; locus "ERV316A3_3p12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0483"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4331"; repStart "-1"; chr3 rmsk exon 81232616 81233411 1675 - . gene_id "ERV316A3_3p12.2d"; transcript_id "ERV316A3_3p12.2d"; locus "ERV316A3_3p12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0483"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "2840"; repStart "-1335"; chr3 rmsk exon 81234403 81235457 2258 - . gene_id "ERV316A3_3p12.2d"; transcript_id "ERV316A3_3p12.2d"; locus "ERV316A3_3p12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0483"; repClass "LTR"; repEnd "3198"; repFamily "ERVL"; repLeft "2146"; repStart "-2028"; ### MER41_3p12.2 ### chr3 rmsk gene 81546380 81551026 . + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0090"; model_cov "4761"; model_pct "80.1"; chr3 rmsk exon 81546380 81546933 4169 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0090"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 81547020 81547625 3139 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0090"; repClass "LTR"; repEnd "1094"; repFamily "ERV1"; repLeft "-4852"; repStart "1"; chr3 rmsk exon 81547679 81548144 3139 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0090"; repClass "LTR"; repEnd "1477"; repFamily "ERV1"; repLeft "-4469"; repStart "641"; chr3 rmsk exon 81548178 81549027 11918 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0090"; repClass "LTR"; repEnd "4778"; repFamily "ERV1"; repLeft "-1168"; repStart "3113"; chr3 rmsk exon 81549327 81550475 11918 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0090"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4779"; chr3 rmsk exon 81550476 81551026 4025 + . gene_id "MER41_3p12.2"; transcript_id "MER41_3p12.2"; locus "MER41_3p12.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0090"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3p12.2g ### chr3 rmsk gene 81728971 81730583 . + . gene_id "ERVLE_3p12.2g"; transcript_id "ERVLE_3p12.2g"; locus "ERVLE_3p12.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0751"; model_cov "1761"; model_pct "31.1"; chr3 rmsk exon 81728971 81729605 957 + . gene_id "ERVLE_3p12.2g"; transcript_id "ERVLE_3p12.2g"; locus "ERVLE_3p12.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0751"; repClass "LTR"; repEnd "3880"; repFamily "ERVL"; repLeft "-1787"; repStart "3146"; chr3 rmsk exon 81729585 81730583 2502 + . gene_id "ERVLE_3p12.2g"; transcript_id "ERVLE_3p12.2g"; locus "ERVLE_3p12.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0751"; repClass "LTR"; repEnd "4900"; repFamily "ERVL"; repLeft "-767"; repStart "3873"; ### ERVLE_3p12.2h ### chr3 rmsk gene 81734506 81736552 . - . gene_id "ERVLE_3p12.2h"; transcript_id "ERVLE_3p12.2h"; locus "ERVLE_3p12.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0752"; model_cov "1677"; model_pct "29.6"; chr3 rmsk exon 81734506 81734807 478 - . gene_id "ERVLE_3p12.2h"; transcript_id "ERVLE_3p12.2h"; locus "ERVLE_3p12.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0752"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2438"; repStart "-2909"; chr3 rmsk exon 81735168 81735794 1031 - . gene_id "ERVLE_3p12.2h"; transcript_id "ERVLE_3p12.2h"; locus "ERVLE_3p12.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0752"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "1776"; repStart "-3257"; chr3 rmsk exon 81735823 81736552 628 - . gene_id "ERVLE_3p12.2h"; transcript_id "ERVLE_3p12.2h"; locus "ERVLE_3p12.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0752"; repClass "LTR"; repEnd "1633"; repFamily "ERVL"; repLeft "910"; repStart "-4034"; ### MER61_3p12.2 ### chr3 rmsk gene 81986021 81991673 . + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0089"; model_cov "4380"; model_pct "84.0"; chr3 rmsk exon 81986021 81986349 1644 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0089"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 81986350 81986760 1737 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0089"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-4819"; repStart "1"; chr3 rmsk exon 81987068 81987226 1737 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0089"; repClass "LTR"; repEnd "538"; repFamily "ERV1"; repLeft "-4679"; repStart "399"; chr3 rmsk exon 81987349 81987472 21305 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0089"; repClass "LTR"; repEnd "1504"; repFamily "ERV1"; repLeft "-3713"; repStart "1321"; chr3 rmsk exon 81987721 81990991 21305 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0089"; repClass "LTR"; repEnd "4821"; repFamily "ERV1"; repLeft "-396"; repStart "1505"; chr3 rmsk exon 81991019 81991353 2144 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0089"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4872"; chr3 rmsk exon 81991358 81991673 1702 + . gene_id "MER61_3p12.2"; transcript_id "MER61_3p12.2"; locus "MER61_3p12.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0089"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_3p12.2e ### chr3 rmsk gene 82035185 82035935 . + . gene_id "ERV316A3_3p12.2e"; transcript_id "ERV316A3_3p12.2e"; locus "ERV316A3_3p12.2e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0484"; model_cov "789"; model_pct "15.1"; chr3 rmsk exon 82035185 82035935 1231 + . gene_id "ERV316A3_3p12.2e"; transcript_id "ERV316A3_3p12.2e"; locus "ERV316A3_3p12.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0484"; repClass "LTR"; repEnd "4837"; repFamily "ERVL"; repLeft "-389"; repStart "4048"; ### ERV316A3_3p12.2f ### chr3 rmsk gene 82122576 82128820 . + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0485"; model_cov "4765"; model_pct "91.2"; chr3 rmsk exon 82122576 82122988 863 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr3 rmsk exon 82123081 82123870 1454 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "1123"; repFamily "ERVL"; repLeft "-4103"; repStart "321"; chr3 rmsk exon 82123899 82125232 1936 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "2318"; repFamily "ERVL"; repLeft "-2908"; repStart "972"; chr3 rmsk exon 82125500 82127450 2522 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "-848"; repStart "2499"; chr3 rmsk exon 82127465 82127951 1344 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4486"; chr3 rmsk exon 82128243 82128447 1344 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4994"; chr3 rmsk exon 82128449 82128820 773 + . gene_id "ERV316A3_3p12.2f"; transcript_id "ERV316A3_3p12.2f"; locus "ERV316A3_3p12.2f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0485"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "2"; ### ERV316A3_3p12.2g ### chr3 rmsk gene 82516053 82519220 . - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0486"; model_cov "2215"; model_pct "42.4"; chr3 rmsk exon 82516053 82516887 2416 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "2842"; repFamily "ERVL"; repLeft "2010"; repStart "-2384"; chr3 rmsk exon 82516946 82517535 706 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "1587"; repStart "-2972"; chr3 rmsk exon 82517661 82517851 1017 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "1567"; repFamily "ERVL"; repLeft "1380"; repStart "-3659"; chr3 rmsk exon 82518202 82518380 1017 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "1379"; repFamily "ERVL"; repLeft "1202"; repStart "-3847"; chr3 rmsk exon 82518493 82518828 719 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "583"; repFamily "ERVL"; repLeft "231"; repStart "-4643"; chr3 rmsk exon 82518829 82519220 425 - . gene_id "ERV316A3_3p12.2g"; transcript_id "ERV316A3_3p12.2g"; locus "ERV316A3_3p12.2g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0486"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_3p12.2b ### chr3 rmsk gene 82758294 82763332 . + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0264"; model_cov "3490"; model_pct "61.7"; chr3 rmsk exon 82758294 82758864 2110 + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0264"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 82758865 82761232 16150 + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0264"; repClass "LTR"; repEnd "2382"; repFamily "ERVL"; repLeft "-3272"; repStart "1"; chr3 rmsk exon 82761230 82761482 7607 + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0264"; repClass "LTR"; repEnd "4801"; repFamily "ERVL"; repLeft "-853"; repStart "4544"; chr3 rmsk exon 82761928 82762784 7607 + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0264"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4802"; chr3 rmsk exon 82762785 82763332 2067 + . gene_id "HERVL_3p12.2b"; transcript_id "HERVL_3p12.2b"; locus "HERVL_3p12.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0264"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLB4_3p12.2c ### chr3 rmsk gene 82883334 82886459 . - . gene_id "ERVLB4_3p12.2c"; transcript_id "ERVLB4_3p12.2c"; locus "ERVLB4_3p12.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0329"; model_cov "1874"; model_pct "32.8"; chr3 rmsk exon 82883334 82883670 1353 - . gene_id "ERVLB4_3p12.2c"; transcript_id "ERVLB4_3p12.2c"; locus "ERVLB4_3p12.2c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0329"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-71"; chr3 rmsk exon 82884279 82885223 4392 - . gene_id "ERVLB4_3p12.2c"; transcript_id "ERVLB4_3p12.2c"; locus "ERVLB4_3p12.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0329"; repClass "LTR"; repEnd "5546"; repFamily "ERVL"; repLeft "4593"; repStart "-168"; chr3 rmsk exon 82885585 82886459 3537 - . gene_id "ERVLB4_3p12.2c"; transcript_id "ERVLB4_3p12.2c"; locus "ERVLB4_3p12.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0329"; repClass "LTR"; repEnd "3912"; repFamily "ERVL"; repLeft "2991"; repStart "-1802"; ### ERVLE_3p12.2i ### chr3 rmsk gene 83019239 83020150 . - . gene_id "ERVLE_3p12.2i"; transcript_id "ERVLE_3p12.2i"; locus "ERVLE_3p12.2i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0756"; model_cov "931"; model_pct "16.4"; chr3 rmsk exon 83019239 83020032 577 - . gene_id "ERVLE_3p12.2i"; transcript_id "ERVLE_3p12.2i"; locus "ERVLE_3p12.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0756"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3527"; repStart "-1338"; chr3 rmsk exon 83020023 83020150 605 - . gene_id "ERVLE_3p12.2i"; transcript_id "ERVLE_3p12.2i"; locus "ERVLE_3p12.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0756"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "3166"; repStart "-2372"; ### MER34B_3p12.2c ### chr3 rmsk gene 83285947 83287936 . - . gene_id "MER34B_3p12.2c"; transcript_id "MER34B_3p12.2c"; locus "MER34B_3p12.2c"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0064"; model_cov "3001"; model_pct "56.0"; chr3 rmsk exon 83285947 83287936 3872 - . gene_id "MER34B_3p12.2c"; transcript_id "MER34B_3p12.2c"; locus "MER34B_3p12.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0064"; repClass "LTR"; repEnd "3237"; repFamily "ERV1"; repLeft "236"; repStart "-2119"; ### HERVH_3p12.2b ### chr3 rmsk gene 83354176 83357600 . - . gene_id "HERVH_3p12.2b"; transcript_id "HERVH_3p12.2b"; locus "HERVH_3p12.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0261"; model_cov "2884"; model_pct "37.4"; chr3 rmsk exon 83354176 83354607 2354 - . gene_id "HERVH_3p12.2b"; transcript_id "HERVH_3p12.2b"; locus "HERVH_3p12.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0261"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 83354608 83355270 2657 - . gene_id "HERVH_3p12.2b"; transcript_id "HERVH_3p12.2b"; locus "HERVH_3p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0261"; repClass "LTR"; repEnd "4498"; repFamily "ERV1"; repLeft "3964"; repStart "-3215"; chr3 rmsk exon 83355265 83355629 2188 - . gene_id "HERVH_3p12.2b"; transcript_id "HERVH_3p12.2b"; locus "HERVH_3p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0261"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3357"; repStart "-3977"; chr3 rmsk exon 83355630 83357600 12068 - . gene_id "HERVH_3p12.2b"; transcript_id "HERVH_3p12.2b"; locus "HERVH_3p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0261"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "859"; repStart "-4883"; ### HERVL18_3p12.1 ### chr3 rmsk gene 83500375 83504820 . - . gene_id "HERVL18_3p12.1"; transcript_id "HERVL18_3p12.1"; locus "HERVL18_3p12.1"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0033"; model_cov "4161"; model_pct "68.8"; chr3 rmsk exon 83500375 83500709 2141 - . gene_id "HERVL18_3p12.1"; transcript_id "HERVL18_3p12.1"; locus "HERVL18_3p12.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0033"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 83500711 83504820 25030 - . gene_id "HERVL18_3p12.1"; transcript_id "HERVL18_3p12.1"; locus "HERVL18_3p12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0033"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "1886"; repStart "0"; ### ERVLE_3p12.1a ### chr3 rmsk gene 83509310 83510913 . + . gene_id "ERVLE_3p12.1a"; transcript_id "ERVLE_3p12.1a"; locus "ERVLE_3p12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0758"; model_cov "594"; model_pct "10.5"; chr3 rmsk exon 83509310 83509413 275 + . gene_id "ERVLE_3p12.1a"; transcript_id "ERVLE_3p12.1a"; locus "ERVLE_3p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0758"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "-4282"; repStart "1283"; chr3 rmsk exon 83510262 83510368 388 + . gene_id "ERVLE_3p12.1a"; transcript_id "ERVLE_3p12.1a"; locus "ERVLE_3p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0758"; repClass "LTR"; repEnd "4147"; repFamily "ERVL"; repLeft "-1520"; repStart "4040"; chr3 rmsk exon 83510518 83510762 500 + . gene_id "ERVLE_3p12.1a"; transcript_id "ERVLE_3p12.1a"; locus "ERVLE_3p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0758"; repClass "LTR"; repEnd "4807"; repFamily "ERVL"; repLeft "-860"; repStart "4552"; chr3 rmsk exon 83510782 83510913 500 + . gene_id "ERVLE_3p12.1a"; transcript_id "ERVLE_3p12.1a"; locus "ERVLE_3p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0758"; repClass "LTR"; repEnd "4892"; repFamily "ERVL"; repLeft "-775"; repStart "4762"; ### HERVL_3p12.1a ### chr3 rmsk gene 83552394 83553856 . - . gene_id "HERVL_3p12.1a"; transcript_id "HERVL_3p12.1a"; locus "HERVL_3p12.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0266"; model_cov "939"; model_pct "16.6"; chr3 rmsk exon 83552394 83552962 1382 - . gene_id "HERVL_3p12.1a"; transcript_id "HERVL_3p12.1a"; locus "HERVL_3p12.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0266"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 83552963 83553856 6026 - . gene_id "HERVL_3p12.1a"; transcript_id "HERVL_3p12.1a"; locus "HERVL_3p12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0266"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4715"; repStart "0"; ### ERVL_3p12.1 ### chr3 rmsk gene 83751693 83753084 . + . gene_id "ERVL_3p12.1"; transcript_id "ERVL_3p12.1"; locus "ERVL_3p12.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0078"; model_cov "1004"; model_pct "17.4"; chr3 rmsk exon 83751693 83752582 4607 + . gene_id "ERVL_3p12.1"; transcript_id "ERVL_3p12.1"; locus "ERVL_3p12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0078"; repClass "LTR"; repEnd "5260"; repFamily "ERVL"; repLeft "-497"; repStart "4365"; chr3 rmsk exon 83752655 83752760 319 + . gene_id "ERVL_3p12.1"; transcript_id "ERVL_3p12.1"; locus "ERVL_3p12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0078"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "-2"; repStart "5646"; chr3 rmsk exon 83752763 83753045 1204 + . gene_id "ERVL_3p12.1"; transcript_id "ERVL_3p12.1"; locus "ERVL_3p12.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0078"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "-121"; repStart "1"; chr3 rmsk exon 83753046 83753084 275 + . gene_id "ERVL_3p12.1"; transcript_id "ERVL_3p12.1"; locus "ERVL_3p12.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0078"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "-1"; repStart "517"; ### MER101_3p12.1 ### chr3 rmsk gene 83910398 83911080 . - . gene_id "MER101_3p12.1"; transcript_id "MER101_3p12.1"; locus "MER101_3p12.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0094"; model_cov "838"; model_pct "12.6"; chr3 rmsk exon 83910398 83911080 1109 - . gene_id "MER101_3p12.1"; transcript_id "MER101_3p12.1"; locus "MER101_3p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0094"; repClass "LTR"; repEnd "3179"; repFamily "ERV1"; repLeft "2341"; repStart "-3460"; ### MER61_3p12.1 ### chr3 rmsk gene 83927633 83934485 . + . gene_id "MER61_3p12.1"; transcript_id "MER61_3p12.1"; locus "MER61_3p12.1"; category "internal"; intModel "MER61-int"; locid "MER61-int_0090"; model_cov "8555"; model_pct "100.0"; chr3 rmsk exon 83927633 83928071 5274 + . gene_id "MER61_3p12.1"; transcript_id "MER61_3p12.1"; locus "MER61_3p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0090"; repClass "LTR"; repEnd "-1223"; repFamily "ERV1"; repLeft "-6440"; repStart "-1692"; chr3 rmsk exon 83928385 83929751 5274 + . gene_id "MER61_3p12.1"; transcript_id "MER61_3p12.1"; locus "MER61_3p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0090"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "-5041"; repStart "-1222"; chr3 rmsk exon 83929746 83930455 16401 + . gene_id "MER61_3p12.1"; transcript_id "MER61_3p12.1"; locus "MER61_3p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0090"; repClass "LTR"; repEnd "871"; repFamily "ERV1"; repLeft "-4346"; repStart "498"; chr3 rmsk exon 83931154 83934485 16401 + . gene_id "MER61_3p12.1"; transcript_id "MER61_3p12.1"; locus "MER61_3p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0090"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "-1099"; ### MER41_3p12.1 ### chr3 rmsk gene 84045604 84049434 . + . gene_id "MER41_3p12.1"; transcript_id "MER41_3p12.1"; locus "MER41_3p12.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0091"; model_cov "4404"; model_pct "74.1"; chr3 rmsk exon 84045604 84046277 3935 + . gene_id "MER41_3p12.1"; transcript_id "MER41_3p12.1"; locus "MER41_3p12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0091"; repClass "LTR"; repEnd "-895"; repFamily "ERV1"; repLeft "-6841"; repStart "-1590"; chr3 rmsk exon 84046250 84047972 5360 + . gene_id "MER41_3p12.1"; transcript_id "MER41_3p12.1"; locus "MER41_3p12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0091"; repClass "LTR"; repEnd "2897"; repFamily "ERV1"; repLeft "-3049"; repStart "290"; chr3 rmsk exon 84048278 84049434 5360 + . gene_id "MER41_3p12.1"; transcript_id "MER41_3p12.1"; locus "MER41_3p12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0091"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-1946"; repStart "2898"; ### HUERSP1_3p12.1 ### chr3 rmsk gene 84066891 84074424 . - . gene_id "HUERSP1_3p12.1"; transcript_id "HUERSP1_3p12.1"; locus "HUERSP1_3p12.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0048"; model_cov "6395"; model_pct "100.0"; chr3 rmsk exon 84066891 84067590 4814 - . gene_id "HUERSP1_3p12.1"; transcript_id "HUERSP1_3p12.1"; locus "HUERSP1_3p12.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0048"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 84067591 84071823 24168 - . gene_id "HUERSP1_3p12.1"; transcript_id "HUERSP1_3p12.1"; locus "HUERSP1_3p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0048"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "1502"; repStart "0"; chr3 rmsk exon 84072110 84073743 24168 - . gene_id "HUERSP1_3p12.1"; transcript_id "HUERSP1_3p12.1"; locus "HUERSP1_3p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0048"; repClass "LTR"; repEnd "1635"; repFamily "ERV1"; repLeft "1"; repStart "-4628"; chr3 rmsk exon 84073744 84074424 4817 - . gene_id "HUERSP1_3p12.1"; transcript_id "HUERSP1_3p12.1"; locus "HUERSP1_3p12.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0048"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3p12.1a ### chr3 rmsk gene 84187812 84193404 . - . gene_id "HERVH_3p12.1a"; transcript_id "HERVH_3p12.1a"; locus "HERVH_3p12.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0263"; model_cov "5404"; model_pct "70.1"; chr3 rmsk exon 84187812 84188186 2199 - . gene_id "HERVH_3p12.1a"; transcript_id "HERVH_3p12.1a"; locus "HERVH_3p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0263"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 84188191 84188605 2652 - . gene_id "HERVH_3p12.1a"; transcript_id "HERVH_3p12.1a"; locus "HERVH_3p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0263"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "7296"; repStart "-4"; chr3 rmsk exon 84188585 84193036 13391 - . gene_id "HERVH_3p12.1a"; transcript_id "HERVH_3p12.1a"; locus "HERVH_3p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0263"; repClass "LTR"; repEnd "4992"; repFamily "ERV1"; repLeft "1"; repStart "-2721"; chr3 rmsk exon 84193039 84193404 2096 - . gene_id "HERVH_3p12.1a"; transcript_id "HERVH_3p12.1a"; locus "HERVH_3p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0263"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFRD_3p12.1 ### chr3 rmsk gene 84222331 84228702 . - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0038"; model_cov "3876"; model_pct "53.8"; chr3 rmsk exon 84222331 84223085 2735 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0038"; repClass "LTR"; repEnd "6442"; repFamily "ERV1"; repLeft "5727"; repStart "-763"; chr3 rmsk exon 84223085 84224123 5235 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0038"; repClass "LTR"; repEnd "4541"; repFamily "ERV1"; repLeft "3476"; repStart "-2664"; chr3 rmsk exon 84225375 84226045 2582 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0038"; repClass "LTR"; repEnd "3473"; repFamily "ERV1"; repLeft "2788"; repStart "-3732"; chr3 rmsk exon 84226227 84227303 7139 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0038"; repClass "LTR"; repEnd "1421"; repFamily "ERV1"; repLeft "321"; repStart "-5784"; chr3 rmsk exon 84227604 84227926 7139 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0038"; repClass "LTR"; repEnd "320"; repFamily "ERV1"; repLeft "9"; repStart "-6885"; chr3 rmsk exon 84228003 84228702 3832 - . gene_id "HERVFRD_3p12.1"; transcript_id "HERVFRD_3p12.1"; locus "HERVFRD_3p12.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0038"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### ERVLB4_3p12.1a ### chr3 rmsk gene 84315971 84318676 . - . gene_id "ERVLB4_3p12.1a"; transcript_id "ERVLB4_3p12.1a"; locus "ERVLB4_3p12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0332"; model_cov "2328"; model_pct "40.7"; chr3 rmsk exon 84315971 84316398 1477 - . gene_id "ERVLB4_3p12.1a"; transcript_id "ERVLB4_3p12.1a"; locus "ERVLB4_3p12.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0332"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "1"; repStart "-68"; chr3 rmsk exon 84316399 84316954 2417 - . gene_id "ERVLB4_3p12.1a"; transcript_id "ERVLB4_3p12.1a"; locus "ERVLB4_3p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0332"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5178"; repStart "0"; chr3 rmsk exon 84316952 84318676 7149 - . gene_id "ERVLB4_3p12.1a"; transcript_id "ERVLB4_3p12.1a"; locus "ERVLB4_3p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0332"; repClass "LTR"; repEnd "4948"; repFamily "ERVL"; repLeft "3156"; repStart "-766"; ### ERV316A3_3p12.1a ### chr3 rmsk gene 84375976 84379107 . + . gene_id "ERV316A3_3p12.1a"; transcript_id "ERV316A3_3p12.1a"; locus "ERV316A3_3p12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0489"; model_cov "1439"; model_pct "27.5"; chr3 rmsk exon 84375976 84376526 783 + . gene_id "ERV316A3_3p12.1a"; transcript_id "ERV316A3_3p12.1a"; locus "ERV316A3_3p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0489"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "-2290"; repStart "2383"; chr3 rmsk exon 84376714 84377061 818 + . gene_id "ERV316A3_3p12.1a"; transcript_id "ERV316A3_3p12.1a"; locus "ERV316A3_3p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0489"; repClass "LTR"; repEnd "3955"; repFamily "ERVL"; repLeft "-1271"; repStart "3598"; chr3 rmsk exon 84377856 84378232 350 + . gene_id "ERV316A3_3p12.1a"; transcript_id "ERV316A3_3p12.1a"; locus "ERV316A3_3p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0489"; repClass "LTR"; repEnd "4337"; repFamily "ERVL"; repLeft "-889"; repStart "3808"; chr3 rmsk exon 84378759 84379107 406 + . gene_id "ERV316A3_3p12.1a"; transcript_id "ERV316A3_3p12.1a"; locus "ERV316A3_3p12.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0489"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-105"; repStart "3"; ### HERVL_3p12.1b ### chr3 rmsk gene 84465713 84472282 . + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0267"; model_cov "5645"; model_pct "99.8"; chr3 rmsk exon 84465713 84466024 2260 + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0267"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-38"; repStart "132"; chr3 rmsk exon 84466061 84466099 2260 + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0267"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "407"; chr3 rmsk exon 84466100 84471771 40845 + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0267"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chr3 rmsk exon 84471780 84472191 2677 + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0267"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-37"; repStart "1"; chr3 rmsk exon 84472240 84472282 2677 + . gene_id "HERVL_3p12.1b"; transcript_id "HERVL_3p12.1b"; locus "HERVL_3p12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0267"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "408"; ### ERV316A3_3p12.1b ### chr3 rmsk gene 84788526 84790281 . + . gene_id "ERV316A3_3p12.1b"; transcript_id "ERV316A3_3p12.1b"; locus "ERV316A3_3p12.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0491"; model_cov "1474"; model_pct "28.2"; chr3 rmsk exon 84788526 84789992 2143 + . gene_id "ERV316A3_3p12.1b"; transcript_id "ERV316A3_3p12.1b"; locus "ERV316A3_3p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0491"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "-1601"; repStart "2151"; chr3 rmsk exon 84790026 84790281 505 + . gene_id "ERV316A3_3p12.1b"; transcript_id "ERV316A3_3p12.1b"; locus "ERV316A3_3p12.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0491"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "184"; ### ERVLE_3p12.1b ### chr3 rmsk gene 84909814 84916301 . + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0762"; model_cov "2748"; model_pct "48.5"; chr3 rmsk exon 84909814 84910172 509 + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0762"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "-5174"; repStart "116"; chr3 rmsk exon 84912316 84912869 632 + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0762"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "-4086"; repStart "929"; chr3 rmsk exon 84913337 84913495 387 + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0762"; repClass "LTR"; repEnd "3567"; repFamily "ERVL"; repLeft "-2100"; repStart "3410"; chr3 rmsk exon 84914453 84915263 1812 + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0762"; repClass "LTR"; repEnd "4517"; repFamily "ERVL"; repLeft "-1150"; repStart "3677"; chr3 rmsk exon 84915568 84916301 1812 + . gene_id "ERVLE_3p12.1b"; transcript_id "ERVLE_3p12.1b"; locus "ERVLE_3p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0762"; repClass "LTR"; repEnd "5240"; repFamily "ERVL"; repLeft "-427"; repStart "4518"; ### ERVLB4_3p12.1b ### chr3 rmsk gene 86127828 86130131 . + . gene_id "ERVLB4_3p12.1b"; transcript_id "ERVLB4_3p12.1b"; locus "ERVLB4_3p12.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0333"; model_cov "2262"; model_pct "39.6"; chr3 rmsk exon 86127828 86129618 9592 + . gene_id "ERVLB4_3p12.1b"; transcript_id "ERVLB4_3p12.1b"; locus "ERVLB4_3p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0333"; repClass "LTR"; repEnd "3604"; repFamily "ERVL"; repLeft "-2110"; repStart "1768"; chr3 rmsk exon 86129719 86130131 2210 + . gene_id "ERVLB4_3p12.1b"; transcript_id "ERVLB4_3p12.1b"; locus "ERVLB4_3p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0333"; repClass "LTR"; repEnd "4007"; repFamily "ERVL"; repLeft "-1707"; repStart "3581"; ### ERV316A3_3p12.1c ### chr3 rmsk gene 86154014 86155771 . - . gene_id "ERV316A3_3p12.1c"; transcript_id "ERV316A3_3p12.1c"; locus "ERV316A3_3p12.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0492"; model_cov "1000"; model_pct "19.1"; chr3 rmsk exon 86154014 86154217 279 - . gene_id "ERV316A3_3p12.1c"; transcript_id "ERV316A3_3p12.1c"; locus "ERV316A3_3p12.1c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0492"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-28"; repStart "-234"; chr3 rmsk exon 86154250 86154448 569 - . gene_id "ERV316A3_3p12.1c"; transcript_id "ERV316A3_3p12.1c"; locus "ERV316A3_3p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0492"; repClass "LTR"; repEnd "5162"; repFamily "ERVL"; repLeft "4977"; repStart "-64"; chr3 rmsk exon 86154955 86155771 2160 - . gene_id "ERV316A3_3p12.1c"; transcript_id "ERV316A3_3p12.1c"; locus "ERV316A3_3p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0492"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "4058"; repStart "-353"; ### ERVLE_3p12.1c ### chr3 rmsk gene 86442196 86448293 . + . gene_id "ERVLE_3p12.1c"; transcript_id "ERVLE_3p12.1c"; locus "ERVLE_3p12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0765"; model_cov "3477"; model_pct "61.4"; chr3 rmsk exon 86442196 86444911 4424 + . gene_id "ERVLE_3p12.1c"; transcript_id "ERVLE_3p12.1c"; locus "ERVLE_3p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0765"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "-2456"; repStart "471"; chr3 rmsk exon 86447230 86447783 1384 + . gene_id "ERVLE_3p12.1c"; transcript_id "ERVLE_3p12.1c"; locus "ERVLE_3p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0765"; repClass "LTR"; repEnd "5245"; repFamily "ERVL"; repLeft "-422"; repStart "4680"; chr3 rmsk exon 86448125 86448293 326 + . gene_id "ERVLE_3p12.1c"; transcript_id "ERVLE_3p12.1c"; locus "ERVLE_3p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0765"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "5480"; ### HERVL_3p12.1c ### chr3 rmsk gene 86444973 86447201 . + . gene_id "HERVL_3p12.1c"; transcript_id "HERVL_3p12.1c"; locus "HERVL_3p12.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0268"; model_cov "1646"; model_pct "29.1"; chr3 rmsk exon 86444973 86445365 2921 + . gene_id "HERVL_3p12.1c"; transcript_id "HERVL_3p12.1c"; locus "HERVL_3p12.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0268"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr3 rmsk exon 86445472 86445513 2921 + . gene_id "HERVL_3p12.1c"; transcript_id "HERVL_3p12.1c"; locus "HERVL_3p12.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0268"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-4"; repStart "399"; chr3 rmsk exon 86445514 86446433 11361 + . gene_id "HERVL_3p12.1c"; transcript_id "HERVL_3p12.1c"; locus "HERVL_3p12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0268"; repClass "LTR"; repEnd "958"; repFamily "ERVL"; repLeft "-4696"; repStart "3"; chr3 rmsk exon 86446471 86447201 11361 + . gene_id "HERVL_3p12.1c"; transcript_id "HERVL_3p12.1c"; locus "HERVL_3p12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0268"; repClass "LTR"; repEnd "1650"; repFamily "ERVL"; repLeft "-4004"; repStart "959"; ### HERVH_3p12.1b ### chr3 rmsk gene 86537069 86543930 . - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0264"; model_cov "6130"; model_pct "79.5"; chr3 rmsk exon 86537069 86537500 2354 - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0264"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 86537501 86538056 3718 - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0264"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 86538050 86538484 2468 - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0264"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr3 rmsk exon 86538476 86543600 20784 - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0264"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr3 rmsk exon 86543611 86543930 1579 - . gene_id "HERVH_3p12.1b"; transcript_id "HERVH_3p12.1b"; locus "HERVH_3p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0264"; repClass "LTR"; repEnd "337"; repFamily "ERV1"; repLeft "1"; repStart "-113"; ### HUERSP3_3p12.1 ### chr3 rmsk gene 86617274 86624690 . + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0039"; model_cov "5712"; model_pct "64.0"; chr3 rmsk exon 86617274 86617760 2679 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "-72"; repStart "26"; chr3 rmsk exon 86617802 86617871 2679 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "574"; chr3 rmsk exon 86617926 86618558 2642 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "743"; repFamily "ERV1"; repLeft "-8176"; repStart "43"; chr3 rmsk exon 86618874 86621051 8025 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "744"; chr3 rmsk exon 86621046 86621182 878 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4540"; chr3 rmsk exon 86621184 86623207 12163 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "4901"; chr3 rmsk exon 86623220 86623347 695 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "6991"; repFamily "ERV1"; repLeft "-1928"; repStart "6862"; chr3 rmsk exon 86623822 86624060 1193 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "8891"; repFamily "ERV1"; repLeft "-28"; repStart "8701"; chr3 rmsk exon 86624085 86624690 2992 + . gene_id "HUERSP3_3p12.1"; transcript_id "HUERSP3_3p12.1"; locus "HUERSP3_3p12.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0039"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV30_3p12.1 ### chr3 rmsk gene 86691552 86697023 . - . gene_id "HERV30_3p12.1"; transcript_id "HERV30_3p12.1"; locus "HERV30_3p12.1"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0003"; model_cov "4080"; model_pct "49.4"; chr3 rmsk exon 86691552 86692249 4663 - . gene_id "HERV30_3p12.1"; transcript_id "HERV30_3p12.1"; locus "HERV30_3p12.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0003"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 86692250 86692714 3319 - . gene_id "HERV30_3p12.1"; transcript_id "HERV30_3p12.1"; locus "HERV30_3p12.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0003"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7797"; repStart "0"; chr3 rmsk exon 86692711 86696319 26163 - . gene_id "HERV30_3p12.1"; transcript_id "HERV30_3p12.1"; locus "HERV30_3p12.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0003"; repClass "LTR"; repEnd "3621"; repFamily "ERV1"; repLeft "1"; repStart "-4636"; chr3 rmsk exon 86696321 86697023 4935 - . gene_id "HERV30_3p12.1"; transcript_id "HERV30_3p12.1"; locus "HERV30_3p12.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0003"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERV316A3_3p12.1d ### chr3 rmsk gene 86912674 86915479 . + . gene_id "ERV316A3_3p12.1d"; transcript_id "ERV316A3_3p12.1d"; locus "ERV316A3_3p12.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0493"; model_cov "1861"; model_pct "35.6"; chr3 rmsk exon 86912674 86912816 257 + . gene_id "ERV316A3_3p12.1d"; transcript_id "ERV316A3_3p12.1d"; locus "ERV316A3_3p12.1d"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0493"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "-30"; repStart "291"; chr3 rmsk exon 86913227 86914138 735 + . gene_id "ERV316A3_3p12.1d"; transcript_id "ERV316A3_3p12.1d"; locus "ERV316A3_3p12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0493"; repClass "LTR"; repEnd "2510"; repFamily "ERVL"; repLeft "-2716"; repStart "1459"; chr3 rmsk exon 86914175 86914979 954 + . gene_id "ERV316A3_3p12.1d"; transcript_id "ERV316A3_3p12.1d"; locus "ERV316A3_3p12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0493"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "-391"; repStart "4025"; chr3 rmsk exon 86915323 86915479 377 + . gene_id "ERV316A3_3p12.1d"; transcript_id "ERV316A3_3p12.1d"; locus "ERV316A3_3p12.1d"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0493"; repClass "LTR"; repEnd "484"; repFamily "ERVL"; repLeft "-54"; repStart "272"; ### ERVLE_3p12.1d ### chr3 rmsk gene 86925892 86928065 . - . gene_id "ERVLE_3p12.1d"; transcript_id "ERVLE_3p12.1d"; locus "ERVLE_3p12.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0766"; model_cov "2254"; model_pct "39.8"; chr3 rmsk exon 86925892 86926095 626 - . gene_id "ERVLE_3p12.1d"; transcript_id "ERVLE_3p12.1d"; locus "ERVLE_3p12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0766"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4511"; repStart "-949"; chr3 rmsk exon 86926131 86926262 447 - . gene_id "ERVLE_3p12.1d"; transcript_id "ERVLE_3p12.1d"; locus "ERVLE_3p12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0766"; repClass "LTR"; repEnd "4439"; repFamily "ERVL"; repLeft "4305"; repStart "-1228"; chr3 rmsk exon 86926325 86928065 1957 - . gene_id "ERVLE_3p12.1d"; transcript_id "ERVLE_3p12.1d"; locus "ERVLE_3p12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0766"; repClass "LTR"; repEnd "2878"; repFamily "ERVL"; repLeft "965"; repStart "-2789"; ### HERVL32_3p12.1 ### chr3 rmsk gene 87036345 87038886 . - . gene_id "HERVL32_3p12.1"; transcript_id "HERVL32_3p12.1"; locus "HERVL32_3p12.1"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0011"; model_cov "1356"; model_pct "39.7"; chr3 rmsk exon 87036345 87036502 877 - . gene_id "HERVL32_3p12.1"; transcript_id "HERVL32_3p12.1"; locus "HERVL32_3p12.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0011"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "303"; repStart "0"; chr3 rmsk exon 87036598 87036898 1468 - . gene_id "HERVL32_3p12.1"; transcript_id "HERVL32_3p12.1"; locus "HERVL32_3p12.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0011"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "2"; repStart "-122"; chr3 rmsk exon 87036902 87037025 351 - . gene_id "HERVL32_3p12.1"; transcript_id "HERVL32_3p12.1"; locus "HERVL32_3p12.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0011"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "3288"; repStart "0"; chr3 rmsk exon 87037722 87038886 2412 - . gene_id "HERVL32_3p12.1"; transcript_id "HERVL32_3p12.1"; locus "HERVL32_3p12.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0011"; repClass "LTR"; repEnd "3213"; repFamily "ERVL"; repLeft "1987"; repStart "-205"; ### ERVLE_3p12.1e ### chr3 rmsk gene 87067654 87071334 . + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0767"; model_cov "2728"; model_pct "48.1"; chr3 rmsk exon 87067654 87068135 820 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4871"; repStart "292"; chr3 rmsk exon 87068265 87068534 919 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "2016"; repFamily "ERVL"; repLeft "-3651"; repStart "1739"; chr3 rmsk exon 87068751 87068922 472 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "2490"; repFamily "ERVL"; repLeft "-3177"; repStart "2312"; chr3 rmsk exon 87068958 87069348 1153 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "2940"; repFamily "ERVL"; repLeft "-2727"; repStart "2538"; chr3 rmsk exon 87069892 87070403 1110 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "3518"; repFamily "ERVL"; repLeft "-2149"; repStart "3003"; chr3 rmsk exon 87070498 87070930 1193 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-1251"; repStart "3950"; chr3 rmsk exon 87070949 87071334 563 + . gene_id "ERVLE_3p12.1e"; transcript_id "ERVLE_3p12.1e"; locus "ERVLE_3p12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0767"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-796"; repStart "4485"; ### MER61_3p11.2 ### chr3 rmsk gene 87141103 87146130 . + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0092"; model_cov "4178"; model_pct "80.1"; chr3 rmsk exon 87141103 87141428 1854 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0092"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 87141429 87141900 1976 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0092"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 87141969 87142044 344 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0092"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "631"; chr3 rmsk exon 87142075 87142117 349 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0092"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr3 rmsk exon 87142116 87145807 23603 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0092"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1655"; chr3 rmsk exon 87145809 87146130 1701 + . gene_id "MER61_3p11.2"; transcript_id "MER61_3p11.2"; locus "MER61_3p11.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0092"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_3p11.2a ### chr3 rmsk gene 87364866 87365692 . - . gene_id "ERVLE_3p11.2a"; transcript_id "ERVLE_3p11.2a"; locus "ERVLE_3p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0768"; model_cov "786"; model_pct "13.9"; chr3 rmsk exon 87364866 87365384 4701 - . gene_id "ERVLE_3p11.2a"; transcript_id "ERVLE_3p11.2a"; locus "ERVLE_3p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0768"; repClass "LTR"; repEnd "5212"; repFamily "ERVL"; repLeft "4653"; repStart "-455"; chr3 rmsk exon 87365481 87365692 4701 - . gene_id "ERVLE_3p11.2a"; transcript_id "ERVLE_3p11.2a"; locus "ERVLE_3p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0768"; repClass "LTR"; repEnd "4652"; repFamily "ERVL"; repLeft "4425"; repStart "-1015"; ### ERVLE_3p11.2b ### chr3 rmsk gene 87365732 87367130 . - . gene_id "ERVLE_3p11.2b"; transcript_id "ERVLE_3p11.2b"; locus "ERVLE_3p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0769"; model_cov "1162"; model_pct "20.5"; chr3 rmsk exon 87365732 87366505 4701 - . gene_id "ERVLE_3p11.2b"; transcript_id "ERVLE_3p11.2b"; locus "ERVLE_3p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0769"; repClass "LTR"; repEnd "5212"; repFamily "ERVL"; repLeft "4373"; repStart "-455"; chr3 rmsk exon 87366812 87367130 4701 - . gene_id "ERVLE_3p11.2b"; transcript_id "ERVLE_3p11.2b"; locus "ERVLE_3p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0769"; repClass "LTR"; repEnd "3584"; repFamily "ERVL"; repLeft "3261"; repStart "-2083"; ### ERV316A3_3p11.2 ### chr3 rmsk gene 87374292 87377308 . - . gene_id "ERV316A3_3p11.2"; transcript_id "ERV316A3_3p11.2"; locus "ERV316A3_3p11.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0494"; model_cov "1025"; model_pct "19.6"; chr3 rmsk exon 87374292 87374631 853 - . gene_id "ERV316A3_3p11.2"; transcript_id "ERV316A3_3p11.2"; locus "ERV316A3_3p11.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0494"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "117"; repStart "0"; chr3 rmsk exon 87374810 87375146 2108 - . gene_id "ERV316A3_3p11.2"; transcript_id "ERV316A3_3p11.2"; locus "ERV316A3_3p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0494"; repClass "LTR"; repEnd "4671"; repFamily "ERVL"; repLeft "4354"; repStart "-555"; chr3 rmsk exon 87376469 87376932 2108 - . gene_id "ERV316A3_3p11.2"; transcript_id "ERV316A3_3p11.2"; locus "ERV316A3_3p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0494"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "3853"; repStart "-873"; chr3 rmsk exon 87377094 87377308 636 - . gene_id "ERV316A3_3p11.2"; transcript_id "ERV316A3_3p11.2"; locus "ERV316A3_3p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0494"; repClass "LTR"; repEnd "3626"; repFamily "ERVL"; repLeft "3418"; repStart "-1600"; ### HERVH_3p11.2 ### chr3 rmsk gene 87570732 87575761 . + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0265"; model_cov "4669"; model_pct "60.5"; chr3 rmsk exon 87570732 87573734 18515 + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0265"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1002"; chr3 rmsk exon 87573741 87574431 4642 + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0265"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4453"; chr3 rmsk exon 87574423 87574846 2452 + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0265"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr3 rmsk exon 87574840 87575394 3525 + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0265"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr3 rmsk exon 87575395 87575761 2143 + . gene_id "HERVH_3p11.2"; transcript_id "HERVH_3p11.2"; locus "HERVH_3p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0265"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_3p11.2 ### chr3 rmsk gene 87607122 87616195 . - . gene_id "HERVIP10F_3p11.2"; transcript_id "HERVIP10F_3p11.2"; locus "HERVIP10F_3p11.2"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0031"; model_cov "7427"; model_pct "96.0"; chr3 rmsk exon 87607122 87607673 2688 - . gene_id "HERVIP10F_3p11.2"; transcript_id "HERVIP10F_3p11.2"; locus "HERVIP10F_3p11.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0031"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 87607778 87610404 18470 - . gene_id "HERVIP10F_3p11.2"; transcript_id "HERVIP10F_3p11.2"; locus "HERVIP10F_3p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0031"; repClass "LTR"; repEnd "7532"; repFamily "ERV1"; repLeft "4928"; repStart "-205"; chr3 rmsk exon 87610722 87615620 19604 - . gene_id "HERVIP10F_3p11.2"; transcript_id "HERVIP10F_3p11.2"; locus "HERVIP10F_3p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0031"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "1"; repStart "-2913"; chr3 rmsk exon 87615621 87616195 3317 - . gene_id "HERVIP10F_3p11.2"; transcript_id "HERVIP10F_3p11.2"; locus "HERVIP10F_3p11.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0031"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_3p11.2c ### chr3 rmsk gene 87667420 87668411 . + . gene_id "ERVLE_3p11.2c"; transcript_id "ERVLE_3p11.2c"; locus "ERVLE_3p11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0772"; model_cov "1042"; model_pct "18.4"; chr3 rmsk exon 87667420 87668411 2658 + . gene_id "ERVLE_3p11.2c"; transcript_id "ERVLE_3p11.2c"; locus "ERVLE_3p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0772"; repClass "LTR"; repEnd "2126"; repFamily "ERVL"; repLeft "-3541"; repStart "1084"; ### HARLEQUIN_3p11.2 ### chr3 rmsk gene 87733672 87741260 . - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0044"; model_cov "6894"; model_pct "100.0"; chr3 rmsk exon 87733672 87733825 973 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "309"; repStart "0"; chr3 rmsk exon 87733869 87734039 805 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "183"; repFamily "ERV1"; repLeft "1"; repStart "-280"; chr3 rmsk exon 87734040 87740893 40304 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr3 rmsk exon 87740894 87741052 1049 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "304"; repStart "0"; chr3 rmsk exon 87741048 87741096 264 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "98"; repStart "-317"; chr3 rmsk exon 87741091 87741260 758 - . gene_id "HARLEQUIN_3p11.2"; transcript_id "HARLEQUIN_3p11.2"; locus "HARLEQUIN_3p11.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0044"; repClass "LTR"; repEnd "183"; repFamily "ERV1"; repLeft "1"; repStart "-280"; ### HERVL40_3p11.2 ### chr3 rmsk gene 87743467 87744174 . + . gene_id "HERVL40_3p11.2"; transcript_id "HERVL40_3p11.2"; locus "HERVL40_3p11.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0070"; model_cov "707"; model_pct "12.8"; chr3 rmsk exon 87743467 87744174 2392 + . gene_id "HERVL40_3p11.2"; transcript_id "HERVL40_3p11.2"; locus "HERVL40_3p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0070"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "-1878"; repStart "2945"; ### HERVW_3p11.1 ### chr3 rmsk gene 87940794 87946379 . - . gene_id "HERVW_3p11.1"; transcript_id "HERVW_3p11.1"; locus "HERVW_3p11.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0063"; model_cov "5132"; model_pct "59.5"; chr3 rmsk exon 87940794 87940855 344 - . gene_id "HERVW_3p11.1"; transcript_id "HERVW_3p11.1"; locus "HERVW_3p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0063"; repClass "LTR"; repEnd "6940"; repFamily "ERV1"; repLeft "6872"; repStart "-1686"; chr3 rmsk exon 87940824 87945057 32250 - . gene_id "HERVW_3p11.1"; transcript_id "HERVW_3p11.1"; locus "HERVW_3p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0063"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "838"; repStart "-3559"; chr3 rmsk exon 87945152 87945852 19594 - . gene_id "HERVW_3p11.1"; transcript_id "HERVW_3p11.1"; locus "HERVW_3p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0063"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "2"; repStart "-7789"; chr3 rmsk exon 87945853 87946379 4117 - . gene_id "HERVW_3p11.1"; transcript_id "HERVW_3p11.1"; locus "HERVW_3p11.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0063"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERV316A3_3p11.1 ### chr3 rmsk gene 88027843 88029549 . - . gene_id "ERV316A3_3p11.1"; transcript_id "ERV316A3_3p11.1"; locus "ERV316A3_3p11.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0495"; model_cov "984"; model_pct "18.8"; chr3 rmsk exon 88027843 88028085 440 - . gene_id "ERV316A3_3p11.1"; transcript_id "ERV316A3_3p11.1"; locus "ERV316A3_3p11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0495"; repClass "LTR"; repEnd "4363"; repFamily "ERVL"; repLeft "4098"; repStart "-863"; chr3 rmsk exon 88028864 88028954 440 - . gene_id "ERV316A3_3p11.1"; transcript_id "ERV316A3_3p11.1"; locus "ERV316A3_3p11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0495"; repClass "LTR"; repEnd "4099"; repFamily "ERVL"; repLeft "4001"; repStart "-1127"; chr3 rmsk exon 88028952 88029217 868 - . gene_id "ERV316A3_3p11.1"; transcript_id "ERV316A3_3p11.1"; locus "ERV316A3_3p11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0495"; repClass "LTR"; repEnd "4119"; repFamily "ERVL"; repLeft "3827"; repStart "-1107"; chr3 rmsk exon 88029232 88029549 778 - . gene_id "ERV316A3_3p11.1"; transcript_id "ERV316A3_3p11.1"; locus "ERV316A3_3p11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0495"; repClass "LTR"; repEnd "3764"; repFamily "ERVL"; repLeft "3435"; repStart "-1462"; ### ERVLB4_3p11.1a ### chr3 rmsk gene 88037910 88039035 . - . gene_id "ERVLB4_3p11.1a"; transcript_id "ERVLB4_3p11.1a"; locus "ERVLB4_3p11.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0335"; model_cov "1030"; model_pct "18.0"; chr3 rmsk exon 88037910 88038062 898 - . gene_id "ERVLB4_3p11.1a"; transcript_id "ERVLB4_3p11.1a"; locus "ERVLB4_3p11.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0335"; repClass "LTR"; repEnd "164"; repFamily "ERVL"; repLeft "10"; repStart "-392"; chr3 rmsk exon 88038071 88038354 6669 - . gene_id "ERVLB4_3p11.1a"; transcript_id "ERVLB4_3p11.1a"; locus "ERVLB4_3p11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0335"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5360"; repStart "-2"; chr3 rmsk exon 88038384 88039035 6669 - . gene_id "ERVLB4_3p11.1a"; transcript_id "ERVLB4_3p11.1a"; locus "ERVLB4_3p11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0335"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "4694"; repStart "-342"; ### ERVLB4_3p11.1b ### chr3 rmsk gene 88039070 88044076 . - . gene_id "ERVLB4_3p11.1b"; transcript_id "ERVLB4_3p11.1b"; locus "ERVLB4_3p11.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0336"; model_cov "3769"; model_pct "66.0"; chr3 rmsk exon 88039070 88039608 6669 - . gene_id "ERVLB4_3p11.1b"; transcript_id "ERVLB4_3p11.1b"; locus "ERVLB4_3p11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0336"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "4809"; repStart "-342"; chr3 rmsk exon 88040324 88042404 11467 - . gene_id "ERVLB4_3p11.1b"; transcript_id "ERVLB4_3p11.1b"; locus "ERVLB4_3p11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0336"; repClass "LTR"; repEnd "4117"; repFamily "ERVL"; repLeft "2015"; repStart "-1597"; chr3 rmsk exon 88042410 88043505 6409 - . gene_id "ERVLB4_3p11.1b"; transcript_id "ERVLB4_3p11.1b"; locus "ERVLB4_3p11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0336"; repClass "LTR"; repEnd "1106"; repFamily "ERVL"; repLeft "2"; repStart "-4608"; chr3 rmsk exon 88043507 88044076 2446 - . gene_id "ERVLB4_3p11.1b"; transcript_id "ERVLB4_3p11.1b"; locus "ERVLB4_3p11.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0336"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "39"; repStart "0"; ### ERVLB4_3p11.1c ### chr3 rmsk gene 88171228 88174639 . + . gene_id "ERVLB4_3p11.1c"; transcript_id "ERVLB4_3p11.1c"; locus "ERVLB4_3p11.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0337"; model_cov "2518"; model_pct "44.1"; chr3 rmsk exon 88171228 88171733 2444 + . gene_id "ERVLB4_3p11.1c"; transcript_id "ERVLB4_3p11.1c"; locus "ERVLB4_3p11.1c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0337"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chr3 rmsk exon 88171734 88172000 1504 + . gene_id "ERVLB4_3p11.1c"; transcript_id "ERVLB4_3p11.1c"; locus "ERVLB4_3p11.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0337"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-5436"; repStart "9"; chr3 rmsk exon 88172421 88174639 13198 + . gene_id "ERVLB4_3p11.1c"; transcript_id "ERVLB4_3p11.1c"; locus "ERVLB4_3p11.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0337"; repClass "LTR"; repEnd "2526"; repFamily "ERVL"; repLeft "-3188"; repStart "277"; ### ERVLE_3p11.1a ### chr3 rmsk gene 89585323 89586646 . - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0775"; model_cov "1217"; model_pct "21.5"; chr3 rmsk exon 89585323 89585843 718 - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0775"; repClass "LTR"; repEnd "5585"; repFamily "ERVL"; repLeft "5059"; repStart "-82"; chr3 rmsk exon 89585903 89586042 383 - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0775"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "4810"; repStart "-724"; chr3 rmsk exon 89586061 89586160 362 - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0775"; repClass "LTR"; repEnd "4040"; repFamily "ERVL"; repLeft "3935"; repStart "-1627"; chr3 rmsk exon 89586180 89586411 664 - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0775"; repClass "LTR"; repEnd "3882"; repFamily "ERVL"; repLeft "3635"; repStart "-1785"; chr3 rmsk exon 89586448 89586646 486 - . gene_id "ERVLE_3p11.1a"; transcript_id "ERVLE_3p11.1a"; locus "ERVLE_3p11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0775"; repClass "LTR"; repEnd "1546"; repFamily "ERVL"; repLeft "1340"; repStart "-4121"; ### ERVLE_3p11.1b ### chr3 rmsk gene 89590564 89591101 . - . gene_id "ERVLE_3p11.1b"; transcript_id "ERVLE_3p11.1b"; locus "ERVLE_3p11.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0776"; model_cov "575"; model_pct "10.1"; chr3 rmsk exon 89590564 89591101 699 - . gene_id "ERVLE_3p11.1b"; transcript_id "ERVLE_3p11.1b"; locus "ERVLE_3p11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0776"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "30"; repStart "-5062"; ### ERVLE_3p11.1c ### chr3 rmsk gene 89597113 89597684 . + . gene_id "ERVLE_3p11.1c"; transcript_id "ERVLE_3p11.1c"; locus "ERVLE_3p11.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0777"; model_cov "574"; model_pct "10.1"; chr3 rmsk exon 89597113 89597684 454 + . gene_id "ERVLE_3p11.1c"; transcript_id "ERVLE_3p11.1c"; locus "ERVLE_3p11.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0777"; repClass "LTR"; repEnd "675"; repFamily "ERVL"; repLeft "-4992"; repStart "101"; ### ERVLE_3p11.1d ### chr3 rmsk gene 89598495 89600953 . - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0778"; model_cov "2517"; model_pct "44.4"; chr3 rmsk exon 89598495 89598974 946 - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0778"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "4651"; repStart "-509"; chr3 rmsk exon 89599011 89599344 721 - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0778"; repClass "LTR"; repEnd "4571"; repFamily "ERVL"; repLeft "4167"; repStart "-1096"; chr3 rmsk exon 89599331 89600142 1016 - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0778"; repClass "LTR"; repEnd "4476"; repFamily "ERVL"; repLeft "3631"; repStart "-1191"; chr3 rmsk exon 89600161 89600626 1186 - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0778"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "2684"; repStart "-2519"; chr3 rmsk exon 89600656 89600953 600 - . gene_id "ERVLE_3p11.1d"; transcript_id "ERVLE_3p11.1d"; locus "ERVLE_3p11.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0778"; repClass "LTR"; repEnd "1215"; repFamily "ERVL"; repLeft "918"; repStart "-4452"; ### ERVLB4_3p11.1d ### chr3 rmsk gene 90045286 90050370 . - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0340"; model_cov "4026"; model_pct "70.5"; chr3 rmsk exon 90045286 90045698 2039 - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0340"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr3 rmsk exon 90045757 90046440 16466 - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0340"; repClass "LTR"; repEnd "4034"; repFamily "ERVL"; repLeft "3310"; repStart "-1680"; chr3 rmsk exon 90046480 90048820 16466 - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0340"; repClass "LTR"; repEnd "3309"; repFamily "ERVL"; repLeft "902"; repStart "-2405"; chr3 rmsk exon 90049182 90050030 16466 - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0340"; repClass "LTR"; repEnd "901"; repFamily "ERVL"; repLeft "6"; repStart "-4813"; chr3 rmsk exon 90050076 90050370 1553 - . gene_id "ERVLB4_3p11.1d"; transcript_id "ERVLB4_3p11.1d"; locus "ERVLB4_3p11.1d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0340"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "5"; repStart "-101"; ### HERVL40_3p11.1 ### chr3 rmsk gene 90060168 90065857 . + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0071"; model_cov "4310"; model_pct "77.9"; chr3 rmsk exon 90060168 90060454 952 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "-226"; repStart "1"; chr3 rmsk exon 90060685 90062982 3917 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "3747"; repFamily "ERVL"; repLeft "-1783"; repStart "693"; chr3 rmsk exon 90063587 90064464 2482 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "4626"; repFamily "ERVL"; repLeft "-904"; repStart "3815"; chr3 rmsk exon 90064658 90064832 413 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "-358"; repStart "4998"; chr3 rmsk exon 90065086 90065152 321 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "-166"; repStart "5295"; chr3 rmsk exon 90065178 90065361 727 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "5525"; repFamily "ERVL"; repLeft "-5"; repStart "5323"; chr3 rmsk exon 90065366 90065857 1412 + . gene_id "HERVL40_3p11.1"; transcript_id "HERVL40_3p11.1"; locus "HERVL40_3p11.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0071"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_3p11.1a ### chr3 rmsk gene 90071545 90072981 . - . gene_id "HERVH_3p11.1a"; transcript_id "HERVH_3p11.1a"; locus "HERVH_3p11.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0266"; model_cov "1493"; model_pct "19.4"; chr3 rmsk exon 90071545 90072890 5138 - . gene_id "HERVH_3p11.1a"; transcript_id "HERVH_3p11.1a"; locus "HERVH_3p11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0266"; repClass "LTR"; repEnd "1494"; repFamily "ERV1"; repLeft "1"; repStart "-6219"; chr3 rmsk exon 90072893 90072981 694 - . gene_id "HERVH_3p11.1a"; transcript_id "HERVH_3p11.1a"; locus "HERVH_3p11.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0266"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "374"; repStart "-2"; ### HERVH_3p11.1b ### chr3 rmsk gene 90082984 90086728 . + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0267"; model_cov "2738"; model_pct "35.5"; chr3 rmsk exon 90082984 90083400 2775 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 90083420 90084466 7065 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1947"; chr3 rmsk exon 90084461 90084607 841 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 90084598 90085102 3340 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 90085105 90085768 4169 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr3 rmsk exon 90085752 90086365 2219 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 90086366 90086728 2011 + . gene_id "HERVH_3p11.1b"; transcript_id "HERVH_3p11.1b"; locus "HERVH_3p11.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0267"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_3q11.1 ### chr3 rmsk gene 91353731 91356452 . - . gene_id "HERVL_3q11.1"; transcript_id "HERVL_3q11.1"; locus "HERVL_3q11.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0271"; model_cov "2061"; model_pct "36.5"; chr3 rmsk exon 91353731 91353785 461 - . gene_id "HERVL_3q11.1"; transcript_id "HERVL_3q11.1"; locus "HERVL_3q11.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0271"; repClass "LTR"; repEnd "55"; repFamily "ERVL"; repLeft "1"; repStart "-398"; chr3 rmsk exon 91354018 91354411 2728 - . gene_id "HERVL_3q11.1"; transcript_id "HERVL_3q11.1"; locus "HERVL_3q11.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0271"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr3 rmsk exon 91354412 91356452 16119 - . gene_id "HERVL_3q11.1"; transcript_id "HERVL_3q11.1"; locus "HERVL_3q11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0271"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3593"; repStart "0"; ### HERVH_3q11.1 ### chr3 rmsk gene 93938055 93944071 . + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0268"; model_cov "5094"; model_pct "66.0"; chr3 rmsk exon 93938055 93938442 2549 + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0268"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 93938443 93938870 1629 + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0268"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr3 rmsk exon 93938952 93943255 24469 + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0268"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "801"; chr3 rmsk exon 93943260 93943682 2478 + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0268"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr3 rmsk exon 93943683 93944071 2326 + . gene_id "HERVH_3q11.1"; transcript_id "HERVH_3q11.1"; locus "HERVH_3q11.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0268"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3q11.1 ### chr3 rmsk gene 93961783 93963470 . + . gene_id "ERVLE_3q11.1"; transcript_id "ERVLE_3q11.1"; locus "ERVLE_3q11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0779"; model_cov "903"; model_pct "15.9"; chr3 rmsk exon 93961783 93961952 355 + . gene_id "ERVLE_3q11.1"; transcript_id "ERVLE_3q11.1"; locus "ERVLE_3q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0779"; repClass "LTR"; repEnd "1226"; repFamily "ERVL"; repLeft "-4441"; repStart "1052"; chr3 rmsk exon 93962779 93963470 805 + . gene_id "ERVLE_3q11.1"; transcript_id "ERVLE_3q11.1"; locus "ERVLE_3q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0779"; repClass "LTR"; repEnd "3547"; repFamily "ERVL"; repLeft "-2120"; repStart "2818"; ### PRIMA4_3q11.2 ### chr3 rmsk gene 94294606 94299986 . + . gene_id "PRIMA4_3q11.2"; transcript_id "PRIMA4_3q11.2"; locus "PRIMA4_3q11.2"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0053"; model_cov "2189"; model_pct "26.5"; chr3 rmsk exon 94294606 94294881 492 + . gene_id "PRIMA4_3q11.2"; transcript_id "PRIMA4_3q11.2"; locus "PRIMA4_3q11.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0053"; repClass "LTR"; repEnd "3295"; repFamily "ERV1"; repLeft "-4975"; repStart "3009"; chr3 rmsk exon 94295671 94297115 2267 + . gene_id "PRIMA4_3q11.2"; transcript_id "PRIMA4_3q11.2"; locus "PRIMA4_3q11.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0053"; repClass "LTR"; repEnd "4837"; repFamily "ERV1"; repLeft "-3433"; repStart "3377"; chr3 rmsk exon 94299557 94299986 768 + . gene_id "PRIMA4_3q11.2"; transcript_id "PRIMA4_3q11.2"; locus "PRIMA4_3q11.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0053"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-853"; repStart "6974"; ### ERVLE_3q11.2a ### chr3 rmsk gene 94319866 94320712 . + . gene_id "ERVLE_3q11.2a"; transcript_id "ERVLE_3q11.2a"; locus "ERVLE_3q11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0781"; model_cov "793"; model_pct "14.0"; chr3 rmsk exon 94319866 94319964 250 + . gene_id "ERVLE_3q11.2a"; transcript_id "ERVLE_3q11.2a"; locus "ERVLE_3q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0781"; repClass "LTR"; repEnd "897"; repFamily "ERVL"; repLeft "-4770"; repStart "787"; chr3 rmsk exon 94320045 94320712 930 + . gene_id "ERVLE_3q11.2a"; transcript_id "ERVLE_3q11.2a"; locus "ERVLE_3q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0781"; repClass "LTR"; repEnd "1372"; repFamily "ERVL"; repLeft "-4295"; repStart "689"; ### HUERSP2_3q11.2a ### chr3 rmsk gene 94469271 94474066 . - . gene_id "HUERSP2_3q11.2a"; transcript_id "HUERSP2_3q11.2a"; locus "HUERSP2_3q11.2a"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0027"; model_cov "3106"; model_pct "100.0"; chr3 rmsk exon 94469271 94470058 3617 - . gene_id "HUERSP2_3q11.2a"; transcript_id "HUERSP2_3q11.2a"; locus "HUERSP2_3q11.2a"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0027"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr3 rmsk exon 94470061 94472747 12981 - . gene_id "HUERSP2_3q11.2a"; transcript_id "HUERSP2_3q11.2a"; locus "HUERSP2_3q11.2a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0027"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "452"; repStart "0"; chr3 rmsk exon 94472831 94473167 1098 - . gene_id "HUERSP2_3q11.2a"; transcript_id "HUERSP2_3q11.2a"; locus "HUERSP2_3q11.2a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0027"; repClass "LTR"; repEnd "-3458"; repFamily "ERV1"; repLeft "-3928"; repStart "-6546"; chr3 rmsk exon 94473304 94474066 3453 - . gene_id "HUERSP2_3q11.2a"; transcript_id "HUERSP2_3q11.2a"; locus "HUERSP2_3q11.2a"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0027"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_3q11.2b ### chr3 rmsk gene 94493015 94497371 . - . gene_id "ERVLE_3q11.2b"; transcript_id "ERVLE_3q11.2b"; locus "ERVLE_3q11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0782"; model_cov "2983"; model_pct "52.6"; chr3 rmsk exon 94493015 94494331 715 - . gene_id "ERVLE_3q11.2b"; transcript_id "ERVLE_3q11.2b"; locus "ERVLE_3q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0782"; repClass "LTR"; repEnd "5535"; repFamily "ERVL"; repLeft "4207"; repStart "-132"; chr3 rmsk exon 94494589 94495900 2406 - . gene_id "ERVLE_3q11.2b"; transcript_id "ERVLE_3q11.2b"; locus "ERVLE_3q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0782"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "1953"; repStart "-2344"; chr3 rmsk exon 94497090 94497371 560 - . gene_id "ERVLE_3q11.2b"; transcript_id "ERVLE_3q11.2b"; locus "ERVLE_3q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0782"; repClass "LTR"; repEnd "1858"; repFamily "ERVL"; repLeft "1573"; repStart "-3809"; ### ERVLE_3q11.2c ### chr3 rmsk gene 94557796 94559210 . + . gene_id "ERVLE_3q11.2c"; transcript_id "ERVLE_3q11.2c"; locus "ERVLE_3q11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0783"; model_cov "1373"; model_pct "24.2"; chr3 rmsk exon 94557796 94557872 257 + . gene_id "ERVLE_3q11.2c"; transcript_id "ERVLE_3q11.2c"; locus "ERVLE_3q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0783"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "-2980"; repStart "2610"; chr3 rmsk exon 94557931 94558184 456 + . gene_id "ERVLE_3q11.2c"; transcript_id "ERVLE_3q11.2c"; locus "ERVLE_3q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0783"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2061"; repStart "3326"; chr3 rmsk exon 94558201 94558323 1654 + . gene_id "ERVLE_3q11.2c"; transcript_id "ERVLE_3q11.2c"; locus "ERVLE_3q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0783"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "-1845"; repStart "3671"; chr3 rmsk exon 94558360 94559210 1654 + . gene_id "ERVLE_3q11.2c"; transcript_id "ERVLE_3q11.2c"; locus "ERVLE_3q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0783"; repClass "LTR"; repEnd "4626"; repFamily "ERVL"; repLeft "-1041"; repStart "3761"; ### ERVLE_3q11.2d ### chr3 rmsk gene 94561987 94564227 . - . gene_id "ERVLE_3q11.2d"; transcript_id "ERVLE_3q11.2d"; locus "ERVLE_3q11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0784"; model_cov "1401"; model_pct "24.7"; chr3 rmsk exon 94561987 94562397 1081 - . gene_id "ERVLE_3q11.2d"; transcript_id "ERVLE_3q11.2d"; locus "ERVLE_3q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0784"; repClass "LTR"; repEnd "2624"; repFamily "ERVL"; repLeft "2187"; repStart "-3043"; chr3 rmsk exon 94562515 94562668 368 - . gene_id "ERVLE_3q11.2d"; transcript_id "ERVLE_3q11.2d"; locus "ERVLE_3q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0784"; repClass "LTR"; repEnd "1954"; repFamily "ERVL"; repLeft "1801"; repStart "-3713"; chr3 rmsk exon 94563407 94564227 816 - . gene_id "ERVLE_3q11.2d"; transcript_id "ERVLE_3q11.2d"; locus "ERVLE_3q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0784"; repClass "LTR"; repEnd "1562"; repFamily "ERVL"; repLeft "751"; repStart "-4105"; ### ERVLE_3q11.2e ### chr3 rmsk gene 94571211 94574050 . - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0785"; model_cov "2194"; model_pct "38.7"; chr3 rmsk exon 94571211 94571803 912 - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0785"; repClass "LTR"; repEnd "5238"; repFamily "ERVL"; repLeft "4710"; repStart "-429"; chr3 rmsk exon 94572239 94573347 1055 - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0785"; repClass "LTR"; repEnd "4307"; repFamily "ERVL"; repLeft "3175"; repStart "-1360"; chr3 rmsk exon 94573360 94573686 273 - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0785"; repClass "LTR"; repEnd "3159"; repFamily "ERVL"; repLeft "2845"; repStart "-2508"; chr3 rmsk exon 94573783 94573875 323 - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0785"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2361"; repStart "-3215"; chr3 rmsk exon 94573923 94574050 335 - . gene_id "ERVLE_3q11.2e"; transcript_id "ERVLE_3q11.2e"; locus "ERVLE_3q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0785"; repClass "LTR"; repEnd "2265"; repFamily "ERVL"; repLeft "2136"; repStart "-3402"; ### ERV316A3_3q11.2a ### chr3 rmsk gene 94601590 94605066 . - . gene_id "ERV316A3_3q11.2a"; transcript_id "ERV316A3_3q11.2a"; locus "ERV316A3_3q11.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0496"; model_cov "3445"; model_pct "65.9"; chr3 rmsk exon 94601590 94604461 5833 - . gene_id "ERV316A3_3q11.2a"; transcript_id "ERV316A3_3q11.2a"; locus "ERV316A3_3q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0496"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "1216"; repStart "-1163"; chr3 rmsk exon 94604458 94604756 722 - . gene_id "ERV316A3_3q11.2a"; transcript_id "ERV316A3_3q11.2a"; locus "ERV316A3_3q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0496"; repClass "LTR"; repEnd "728"; repFamily "ERVL"; repLeft "419"; repStart "-4498"; chr3 rmsk exon 94604772 94605066 802 - . gene_id "ERV316A3_3q11.2a"; transcript_id "ERV316A3_3q11.2a"; locus "ERV316A3_3q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0496"; repClass "LTR"; repEnd "337"; repFamily "ERVL"; repLeft "48"; repStart "-4889"; ### HERVK11D_3q11.2 ### chr3 rmsk gene 94647179 94651193 . + . gene_id "HERVK11D_3q11.2"; transcript_id "HERVK11D_3q11.2"; locus "HERVK11D_3q11.2"; category "oneside"; intModel "HERVK11D-int"; locid "HERVK11D-int_0005"; model_cov "3151"; model_pct "40.6"; chr3 rmsk exon 94647179 94648059 6894 + . gene_id "HERVK11D_3q11.2"; transcript_id "HERVK11D_3q11.2"; locus "HERVK11D_3q11.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0005"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 94648060 94648919 6784 + . gene_id "HERVK11D_3q11.2"; transcript_id "HERVK11D_3q11.2"; locus "HERVK11D_3q11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0005"; repClass "LTR"; repEnd "860"; repFamily "ERVK"; repLeft "-6892"; repStart "1"; chr3 rmsk exon 94648915 94650653 14587 + . gene_id "HERVK11D_3q11.2"; transcript_id "HERVK11D_3q11.2"; locus "HERVK11D_3q11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0005"; repClass "LTR"; repEnd "4804"; repFamily "ERVK"; repLeft "-2948"; repStart "3066"; chr3 rmsk exon 94650644 94651193 4398 + . gene_id "HERVK11D_3q11.2"; transcript_id "HERVK11D_3q11.2"; locus "HERVK11D_3q11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0005"; repClass "LTR"; repEnd "5922"; repFamily "ERVK"; repLeft "-1830"; repStart "5368"; ### ERV316A3_3q11.2b ### chr3 rmsk gene 94692828 94695259 . - . gene_id "ERV316A3_3q11.2b"; transcript_id "ERV316A3_3q11.2b"; locus "ERV316A3_3q11.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0497"; model_cov "1467"; model_pct "28.1"; chr3 rmsk exon 94692828 94693006 2208 - . gene_id "ERV316A3_3q11.2b"; transcript_id "ERV316A3_3q11.2b"; locus "ERV316A3_3q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0497"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "4492"; repStart "-569"; chr3 rmsk exon 94693092 94694469 2208 - . gene_id "ERV316A3_3q11.2b"; transcript_id "ERV316A3_3q11.2b"; locus "ERV316A3_3q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0497"; repClass "LTR"; repEnd "4491"; repFamily "ERVL"; repLeft "3189"; repStart "-735"; chr3 rmsk exon 94694507 94694769 764 - . gene_id "ERV316A3_3q11.2b"; transcript_id "ERV316A3_3q11.2b"; locus "ERV316A3_3q11.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0497"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "136"; repStart "-38"; chr3 rmsk exon 94695046 94695259 403 - . gene_id "ERV316A3_3q11.2b"; transcript_id "ERV316A3_3q11.2b"; locus "ERV316A3_3q11.2b"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0497"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "218"; repStart "-60"; ### HERVL_3q11.2c ### chr3 rmsk gene 94729719 94732825 . - . gene_id "HERVL_3q11.2c"; transcript_id "HERVL_3q11.2c"; locus "HERVL_3q11.2c"; category "insert*"; intModel "HERVL-int"; locid "HERVL-int_0273"; model_cov "2065"; model_pct "36.5"; chr3 rmsk exon 94729719 94730135 2770 - . gene_id "HERVL_3q11.2c"; transcript_id "HERVL_3q11.2c"; locus "HERVL_3q11.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0273"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr3 rmsk exon 94730136 94730754 19638 - . gene_id "HERVL_3q11.2c"; transcript_id "HERVL_3q11.2c"; locus "HERVL_3q11.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0273"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5027"; repStart "0"; chr3 rmsk exon 94730792 94732825 19638 - . gene_id "HERVL_3q11.2c"; transcript_id "HERVL_3q11.2c"; locus "HERVL_3q11.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0273"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3589"; repStart "0"; ### HERVL_3q11.2a ### chr3 rmsk gene 94886367 94889689 . + . gene_id "HERVL_3q11.2a"; transcript_id "HERVL_3q11.2a"; locus "HERVL_3q11.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0274"; model_cov "2395"; model_pct "42.4"; chr3 rmsk exon 94886367 94886834 2796 + . gene_id "HERVL_3q11.2a"; transcript_id "HERVL_3q11.2a"; locus "HERVL_3q11.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0274"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 94886835 94888557 11706 + . gene_id "HERVL_3q11.2a"; transcript_id "HERVL_3q11.2a"; locus "HERVL_3q11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0274"; repClass "LTR"; repEnd "1715"; repFamily "ERVL"; repLeft "-3939"; repStart "1"; chr3 rmsk exon 94888562 94889239 4946 + . gene_id "HERVL_3q11.2a"; transcript_id "HERVL_3q11.2a"; locus "HERVL_3q11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0274"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-8"; repStart "4965"; chr3 rmsk exon 94889243 94889689 3002 + . gene_id "HERVL_3q11.2a"; transcript_id "HERVL_3q11.2a"; locus "HERVL_3q11.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0274"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_3q11.2a ### chr3 rmsk gene 95212144 95218188 . + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0150"; model_cov "5511"; model_pct "83.5"; chr3 rmsk exon 95212144 95212557 2320 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0150"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr3 rmsk exon 95212562 95213291 2955 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "885"; repFamily "ERV1"; repLeft "-5713"; repStart "1"; chr3 rmsk exon 95213293 95213674 1350 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "510"; chr3 rmsk exon 95213673 95213866 3656 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "1981"; repFamily "ERV1"; repLeft "-4617"; repStart "1804"; chr3 rmsk exon 95214198 95214679 3656 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "1982"; chr3 rmsk exon 95214922 95215436 2239 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "3239"; repFamily "ERV1"; repLeft "-3359"; repStart "2737"; chr3 rmsk exon 95215438 95217751 9774 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0150"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3918"; chr3 rmsk exon 95217759 95218188 2347 + . gene_id "MER4_3q11.2a"; transcript_id "MER4_3q11.2a"; locus "MER4_3q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0150"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_3q11.2a ### chr3 rmsk gene 95407731 95412947 . + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0093"; model_cov "3930"; model_pct "75.3"; chr3 rmsk exon 95407731 95408085 1584 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0093"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 95408086 95408233 737 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0093"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-5074"; repStart "2"; chr3 rmsk exon 95408310 95408404 505 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0093"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-4763"; repStart "343"; chr3 rmsk exon 95408435 95408870 2590 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0093"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "414"; chr3 rmsk exon 95409355 95412197 20520 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0093"; repClass "LTR"; repEnd "4822"; repFamily "ERV1"; repLeft "-395"; repStart "1961"; chr3 rmsk exon 95412239 95412602 20520 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0093"; repClass "LTR"; repEnd "5214"; repFamily "ERV1"; repLeft "-3"; repStart "4823"; chr3 rmsk exon 95412606 95412947 1694 + . gene_id "MER61_3q11.2a"; transcript_id "MER61_3q11.2a"; locus "MER61_3q11.2a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0093"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_3q11.2c ### chr3 rmsk gene 95447125 95447989 . - . gene_id "ERV316A3_3q11.2c"; transcript_id "ERV316A3_3q11.2c"; locus "ERV316A3_3q11.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0498"; model_cov "625"; model_pct "12.0"; chr3 rmsk exon 95447125 95447744 1419 - . gene_id "ERV316A3_3q11.2c"; transcript_id "ERV316A3_3q11.2c"; locus "ERV316A3_3q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0498"; repClass "LTR"; repEnd "984"; repFamily "ERVL"; repLeft "359"; repStart "-4242"; chr3 rmsk exon 95447760 95447989 902 - . gene_id "ERV316A3_3q11.2c"; transcript_id "ERV316A3_3q11.2c"; locus "ERV316A3_3q11.2c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0498"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "144"; repStart "-96"; ### ERVLE_3q11.2f ### chr3 rmsk gene 95457408 95458323 . - . gene_id "ERVLE_3q11.2f"; transcript_id "ERVLE_3q11.2f"; locus "ERVLE_3q11.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0786"; model_cov "649"; model_pct "11.5"; chr3 rmsk exon 95457408 95457968 613 - . gene_id "ERVLE_3q11.2f"; transcript_id "ERVLE_3q11.2f"; locus "ERVLE_3q11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0786"; repClass "LTR"; repEnd "5234"; repFamily "ERVL"; repLeft "4672"; repStart "-433"; chr3 rmsk exon 95458233 95458323 325 - . gene_id "ERVLE_3q11.2f"; transcript_id "ERVLE_3q11.2f"; locus "ERVLE_3q11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0786"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "4267"; repStart "-1313"; ### MER101_3q11.2a ### chr3 rmsk gene 95468831 95473367 . - . gene_id "MER101_3q11.2a"; transcript_id "MER101_3q11.2a"; locus "MER101_3q11.2a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0095"; model_cov "4462"; model_pct "67.2"; chr3 rmsk exon 95468831 95469252 1841 - . gene_id "MER101_3q11.2a"; transcript_id "MER101_3q11.2a"; locus "MER101_3q11.2a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0095"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chr3 rmsk exon 95469253 95469828 1856 - . gene_id "MER101_3q11.2a"; transcript_id "MER101_3q11.2a"; locus "MER101_3q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0095"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6004"; repStart "0"; chr3 rmsk exon 95469829 95472255 4200 - . gene_id "MER101_3q11.2a"; transcript_id "MER101_3q11.2a"; locus "MER101_3q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0095"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "2820"; repStart "-1237"; chr3 rmsk exon 95472389 95473367 2582 - . gene_id "MER101_3q11.2a"; transcript_id "MER101_3q11.2a"; locus "MER101_3q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0095"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "1521"; repStart "-3873"; ### LTR57_3q11.2 ### chr3 rmsk gene 95473368 95474323 . - . gene_id "LTR57_3q11.2"; transcript_id "LTR57_3q11.2"; locus "LTR57_3q11.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0042"; model_cov "942"; model_pct "17.6"; chr3 rmsk exon 95473368 95474323 3238 - . gene_id "LTR57_3q11.2"; transcript_id "LTR57_3q11.2"; locus "LTR57_3q11.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0042"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "630"; repStart "-3771"; ### MER101_3q11.2b ### chr3 rmsk gene 95474626 95476855 . - . gene_id "MER101_3q11.2b"; transcript_id "MER101_3q11.2b"; locus "MER101_3q11.2b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0096"; model_cov "1079"; model_pct "16.3"; chr3 rmsk exon 95474626 95475143 2582 - . gene_id "MER101_3q11.2b"; transcript_id "MER101_3q11.2b"; locus "MER101_3q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0096"; repClass "LTR"; repEnd "3276"; repFamily "ERV1"; repLeft "2784"; repStart "-3363"; chr3 rmsk exon 95475525 95476090 1913 - . gene_id "MER101_3q11.2b"; transcript_id "MER101_3q11.2b"; locus "MER101_3q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0096"; repClass "LTR"; repEnd "2775"; repFamily "ERV1"; repLeft "2188"; repStart "-3864"; chr3 rmsk exon 95476475 95476855 1354 - . gene_id "MER101_3q11.2b"; transcript_id "MER101_3q11.2b"; locus "MER101_3q11.2b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0096"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "3"; repStart "-9"; ### ERV316A3_3q11.2d ### chr3 rmsk gene 95615144 95616787 . + . gene_id "ERV316A3_3q11.2d"; transcript_id "ERV316A3_3q11.2d"; locus "ERV316A3_3q11.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0500"; model_cov "1018"; model_pct "19.5"; chr3 rmsk exon 95615144 95615872 1435 + . gene_id "ERV316A3_3q11.2d"; transcript_id "ERV316A3_3q11.2d"; locus "ERV316A3_3q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0500"; repClass "LTR"; repEnd "4830"; repFamily "ERVL"; repLeft "-396"; repStart "4090"; chr3 rmsk exon 95616114 95616393 939 + . gene_id "ERV316A3_3q11.2d"; transcript_id "ERV316A3_3q11.2d"; locus "ERV316A3_3q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0500"; repClass "LTR"; repEnd "5127"; repFamily "ERVL"; repLeft "-99"; repStart "4849"; chr3 rmsk exon 95616399 95616787 707 + . gene_id "ERV316A3_3q11.2d"; transcript_id "ERV316A3_3q11.2d"; locus "ERV316A3_3q11.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0500"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-16"; repStart "1"; ### ERVLE_3q11.2g ### chr3 rmsk gene 95807126 95807726 . + . gene_id "ERVLE_3q11.2g"; transcript_id "ERVLE_3q11.2g"; locus "ERVLE_3q11.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0787"; model_cov "618"; model_pct "10.9"; chr3 rmsk exon 95807126 95807726 1051 + . gene_id "ERVLE_3q11.2g"; transcript_id "ERVLE_3q11.2g"; locus "ERVLE_3q11.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0787"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "-3173"; repStart "1876"; ### HERV9_3q11.2 ### chr3 rmsk gene 95948663 95951715 . - . gene_id "HERV9_3q11.2"; transcript_id "HERV9_3q11.2"; locus "HERV9_3q11.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0036"; model_cov "2285"; model_pct "27.1"; chr3 rmsk exon 95948663 95948875 1648 - . gene_id "HERV9_3q11.2"; transcript_id "HERV9_3q11.2"; locus "HERV9_3q11.2"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0036"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "476"; repStart "0"; chr3 rmsk exon 95948876 95951018 10436 - . gene_id "HERV9_3q11.2"; transcript_id "HERV9_3q11.2"; locus "HERV9_3q11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0036"; repClass "LTR"; repEnd "2289"; repFamily "ERV1"; repLeft "4"; repStart "-6147"; chr3 rmsk exon 95951019 95951715 4399 - . gene_id "HERV9_3q11.2"; transcript_id "HERV9_3q11.2"; locus "HERV9_3q11.2"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0036"; repClass "LTR"; repEnd "1134"; repFamily "ERV1"; repLeft "370"; repStart "-120"; ### ERVLB4_3q11.2a ### chr3 rmsk gene 95959088 95959898 . + . gene_id "ERVLB4_3q11.2a"; transcript_id "ERVLB4_3q11.2a"; locus "ERVLB4_3q11.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0341"; model_cov "708"; model_pct "12.4"; chr3 rmsk exon 95959088 95959218 742 + . gene_id "ERVLB4_3q11.2a"; transcript_id "ERVLB4_3q11.2a"; locus "ERVLB4_3q11.2a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0341"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "-382"; repStart "1"; chr3 rmsk exon 95959222 95959898 3630 + . gene_id "ERVLB4_3q11.2a"; transcript_id "ERVLB4_3q11.2a"; locus "ERVLB4_3q11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0341"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "-3984"; repStart "1022"; ### MER41_3q11.2 ### chr3 rmsk gene 96171226 96175156 . + . gene_id "MER41_3q11.2"; transcript_id "MER41_3q11.2"; locus "MER41_3q11.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0092"; model_cov "5929"; model_pct "99.7"; chr3 rmsk exon 96171226 96171377 736 + . gene_id "MER41_3q11.2"; transcript_id "MER41_3q11.2"; locus "MER41_3q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0092"; repClass "LTR"; repEnd "1138"; repFamily "ERV1"; repLeft "-4808"; repStart "992"; chr3 rmsk exon 96171384 96175156 14432 + . gene_id "MER41_3q11.2"; transcript_id "MER41_3q11.2"; locus "MER41_3q11.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0092"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "162"; ### ERVLE_3q11.2h ### chr3 rmsk gene 96188944 96191218 . + . gene_id "ERVLE_3q11.2h"; transcript_id "ERVLE_3q11.2h"; locus "ERVLE_3q11.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0789"; model_cov "1307"; model_pct "23.1"; chr3 rmsk exon 96188944 96189689 3220 + . gene_id "ERVLE_3q11.2h"; transcript_id "ERVLE_3q11.2h"; locus "ERVLE_3q11.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0789"; repClass "LTR"; repEnd "731"; repFamily "ERVL"; repLeft "-4936"; repStart "4"; chr3 rmsk exon 96190657 96191218 3220 + . gene_id "ERVLE_3q11.2h"; transcript_id "ERVLE_3q11.2h"; locus "ERVLE_3q11.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0789"; repClass "LTR"; repEnd "1312"; repFamily "ERVL"; repLeft "-4355"; repStart "732"; ### ERV316A3_3q11.2e ### chr3 rmsk gene 96238159 96241296 . - . gene_id "ERV316A3_3q11.2e"; transcript_id "ERV316A3_3q11.2e"; locus "ERV316A3_3q11.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0502"; model_cov "1867"; model_pct "35.7"; chr3 rmsk exon 96238159 96238489 593 - . gene_id "ERV316A3_3q11.2e"; transcript_id "ERV316A3_3q11.2e"; locus "ERV316A3_3q11.2e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0502"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "14"; repStart "-86"; chr3 rmsk exon 96238504 96239585 1862 - . gene_id "ERV316A3_3q11.2e"; transcript_id "ERV316A3_3q11.2e"; locus "ERV316A3_3q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0502"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4158"; repStart "-1"; chr3 rmsk exon 96240306 96240870 909 - . gene_id "ERV316A3_3q11.2e"; transcript_id "ERV316A3_3q11.2e"; locus "ERV316A3_3q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0502"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "3565"; repStart "-1064"; chr3 rmsk exon 96241090 96241296 406 - . gene_id "ERV316A3_3q11.2e"; transcript_id "ERV316A3_3q11.2e"; locus "ERV316A3_3q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0502"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "2587"; repStart "-2436"; ### ERV316A3_3q11.2f ### chr3 rmsk gene 96241531 96243435 . - . gene_id "ERV316A3_3q11.2f"; transcript_id "ERV316A3_3q11.2f"; locus "ERV316A3_3q11.2f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0503"; model_cov "1517"; model_pct "29.0"; chr3 rmsk exon 96241531 96241759 430 - . gene_id "ERV316A3_3q11.2f"; transcript_id "ERV316A3_3q11.2f"; locus "ERV316A3_3q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0503"; repClass "LTR"; repEnd "2814"; repFamily "ERVL"; repLeft "2542"; repStart "-2412"; chr3 rmsk exon 96242120 96242168 430 - . gene_id "ERV316A3_3q11.2f"; transcript_id "ERV316A3_3q11.2f"; locus "ERV316A3_3q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0503"; repClass "LTR"; repEnd "2581"; repFamily "ERVL"; repLeft "2537"; repStart "-2645"; chr3 rmsk exon 96242359 96243435 2412 - . gene_id "ERV316A3_3q11.2f"; transcript_id "ERV316A3_3q11.2f"; locus "ERV316A3_3q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0503"; repClass "LTR"; repEnd "2448"; repFamily "ERVL"; repLeft "1247"; repStart "-2778"; ### ERVLE_3q11.2i ### chr3 rmsk gene 96361741 96363682 . - . gene_id "ERVLE_3q11.2i"; transcript_id "ERVLE_3q11.2i"; locus "ERVLE_3q11.2i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0790"; model_cov "985"; model_pct "17.4"; chr3 rmsk exon 96361741 96361926 471 - . gene_id "ERVLE_3q11.2i"; transcript_id "ERVLE_3q11.2i"; locus "ERVLE_3q11.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0790"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5468"; repStart "0"; chr3 rmsk exon 96362946 96363682 1552 - . gene_id "ERVLE_3q11.2i"; transcript_id "ERVLE_3q11.2i"; locus "ERVLE_3q11.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0790"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "3752"; repStart "-1129"; ### HERVW_3q11.2 ### chr3 rmsk gene 96666475 96675444 . - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0065"; model_cov "6933"; model_pct "80.4"; chr3 rmsk exon 96666475 96667150 5030 - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0065"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr3 rmsk exon 96667151 96668867 14001 - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0065"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6902"; repStart "0"; chr3 rmsk exon 96668859 96673354 35057 - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0065"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "704"; repStart "-3559"; chr3 rmsk exon 96673781 96674674 6323 - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0065"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "1"; repStart "-7779"; chr3 rmsk exon 96674696 96675444 5783 - . gene_id "HERVW_3q11.2"; transcript_id "HERVW_3q11.2"; locus "HERVW_3q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0065"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### HUERSP2_3q11.2b ### chr3 rmsk gene 96699598 96704333 . + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0028"; model_cov "3008"; model_pct "97.4"; chr3 rmsk exon 96699598 96700406 4830 + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0028"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "41"; chr3 rmsk exon 96700407 96702825 12768 + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0028"; repClass "LTR"; repEnd "2556"; repFamily "ERV1"; repLeft "-532"; repStart "1"; chr3 rmsk exon 96702846 96703017 2547 + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0028"; repClass "LTR"; repEnd "2808"; repFamily "ERV1"; repLeft "-280"; repStart "2631"; chr3 rmsk exon 96703360 96703622 2547 + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0028"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "-3"; repStart "2809"; chr3 rmsk exon 96703623 96704333 3545 + . gene_id "HUERSP2_3q11.2b"; transcript_id "HUERSP2_3q11.2b"; locus "HUERSP2_3q11.2b"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0028"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_3q11.2g ### chr3 rmsk gene 96730288 96734286 . - . gene_id "ERV316A3_3q11.2g"; transcript_id "ERV316A3_3q11.2g"; locus "ERV316A3_3q11.2g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0504"; model_cov "3659"; model_pct "70.0"; chr3 rmsk exon 96730288 96731999 1752 - . gene_id "ERV316A3_3q11.2g"; transcript_id "ERV316A3_3q11.2g"; locus "ERV316A3_3q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0504"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "2387"; repStart "-918"; chr3 rmsk exon 96732475 96732668 355 - . gene_id "ERV316A3_3q11.2g"; transcript_id "ERV316A3_3q11.2g"; locus "ERV316A3_3q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0504"; repClass "LTR"; repEnd "3133"; repFamily "ERVL"; repLeft "2935"; repStart "-2093"; chr3 rmsk exon 96732836 96734286 1296 - . gene_id "ERV316A3_3q11.2g"; transcript_id "ERV316A3_3q11.2g"; locus "ERV316A3_3q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0504"; repClass "LTR"; repEnd "2846"; repFamily "ERVL"; repLeft "1306"; repStart "-2380"; ### ERVLB4_3q11.2b ### chr3 rmsk gene 97157563 97164311 . - . gene_id "ERVLB4_3q11.2b"; transcript_id "ERVLB4_3q11.2b"; locus "ERVLB4_3q11.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0343"; model_cov "5617"; model_pct "98.3"; chr3 rmsk exon 97157563 97157967 1846 - . gene_id "ERVLB4_3q11.2b"; transcript_id "ERVLB4_3q11.2b"; locus "ERVLB4_3q11.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0343"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "42"; repStart "-77"; chr3 rmsk exon 97157968 97158452 22716 - . gene_id "ERVLB4_3q11.2b"; transcript_id "ERVLB4_3q11.2b"; locus "ERVLB4_3q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0343"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5212"; repStart "0"; chr3 rmsk exon 97159049 97160281 22716 - . gene_id "ERVLB4_3q11.2b"; transcript_id "ERVLB4_3q11.2b"; locus "ERVLB4_3q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0343"; repClass "LTR"; repEnd "5211"; repFamily "ERVL"; repLeft "3962"; repStart "-503"; chr3 rmsk exon 97160580 97164311 22716 - . gene_id "ERVLB4_3q11.2b"; transcript_id "ERVLB4_3q11.2b"; locus "ERVLB4_3q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0343"; repClass "LTR"; repEnd "3961"; repFamily "ERVL"; repLeft "95"; repStart "-1753"; ### HERVH_3q11.2a ### chr3 rmsk gene 97272463 97277550 . - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0269"; model_cov "4274"; model_pct "55.4"; chr3 rmsk exon 97272463 97272863 2311 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 97272864 97273239 2315 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 97273238 97273450 1293 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 97273455 97275174 8651 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "3478"; repStart "-2567"; chr3 rmsk exon 97275165 97275336 935 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr3 rmsk exon 97275309 97277154 12088 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1155"; repStart "-4726"; chr3 rmsk exon 97277159 97277550 2468 - . gene_id "HERVH_3q11.2a"; transcript_id "HERVH_3q11.2a"; locus "HERVH_3q11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0269"; repClass "LTR"; repEnd "419"; repFamily "ERV1"; repLeft "1"; repStart "-31"; ### HERVL_3q11.2b ### chr3 rmsk gene 97773026 97775656 . - . gene_id "HERVL_3q11.2b"; transcript_id "HERVL_3q11.2b"; locus "HERVL_3q11.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0276"; model_cov "1699"; model_pct "30.0"; chr3 rmsk exon 97773026 97773471 3246 - . gene_id "HERVL_3q11.2b"; transcript_id "HERVL_3q11.2b"; locus "HERVL_3q11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0276"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 97773472 97774181 5120 - . gene_id "HERVL_3q11.2b"; transcript_id "HERVL_3q11.2b"; locus "HERVL_3q11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0276"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4948"; repStart "0"; chr3 rmsk exon 97774179 97775205 7712 - . gene_id "HERVL_3q11.2b"; transcript_id "HERVL_3q11.2b"; locus "HERVL_3q11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0276"; repClass "LTR"; repEnd "994"; repFamily "ERVL"; repLeft "1"; repStart "-4660"; chr3 rmsk exon 97775206 97775656 3133 - . gene_id "HERVL_3q11.2b"; transcript_id "HERVL_3q11.2b"; locus "HERVL_3q11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0276"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-8"; repStart "0"; ### MER61_3q11.2b ### chr3 rmsk gene 98109337 98114913 . + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0094"; model_cov "4484"; model_pct "85.9"; chr3 rmsk exon 98109337 98109680 1785 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0094"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 98109683 98109770 392 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0094"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-5125"; repStart "3"; chr3 rmsk exon 98109989 98110465 2541 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0094"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "-4451"; repStart "241"; chr3 rmsk exon 98110498 98111312 12074 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0094"; repClass "LTR"; repEnd "2237"; repFamily "ERV1"; repLeft "-2980"; repStart "1413"; chr3 rmsk exon 98111616 98112697 20529 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0094"; repClass "LTR"; repEnd "3311"; repFamily "ERV1"; repLeft "-1906"; repStart "2170"; chr3 rmsk exon 98112754 98114556 20529 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0094"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3312"; chr3 rmsk exon 98114557 98114913 1542 + . gene_id "MER61_3q11.2b"; transcript_id "MER61_3q11.2b"; locus "MER61_3q11.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0094"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_3q11.2c ### chr3 rmsk gene 98124302 98126191 . - . gene_id "ERVLB4_3q11.2c"; transcript_id "ERVLB4_3q11.2c"; locus "ERVLB4_3q11.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0344"; model_cov "1603"; model_pct "28.1"; chr3 rmsk exon 98124302 98124630 1270 - . gene_id "ERVLB4_3q11.2c"; transcript_id "ERVLB4_3q11.2c"; locus "ERVLB4_3q11.2c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0344"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "18"; repStart "-175"; chr3 rmsk exon 98124656 98125018 1472 - . gene_id "ERVLB4_3q11.2c"; transcript_id "ERVLB4_3q11.2c"; locus "ERVLB4_3q11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0344"; repClass "LTR"; repEnd "5704"; repFamily "ERVL"; repLeft "5322"; repStart "-10"; chr3 rmsk exon 98125023 98126191 5237 - . gene_id "ERVLB4_3q11.2c"; transcript_id "ERVLB4_3q11.2c"; locus "ERVLB4_3q11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0344"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "3969"; repStart "-524"; ### MER34B_3q11.2a ### chr3 rmsk gene 98136997 98139861 . - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0067"; model_cov "1896"; model_pct "35.4"; chr3 rmsk exon 98136997 98137268 981 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "4125"; repFamily "ERV1"; repLeft "3849"; repStart "-1231"; chr3 rmsk exon 98137296 98137367 254 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "3633"; repFamily "ERV1"; repLeft "3560"; repStart "-1723"; chr3 rmsk exon 98137369 98138004 3072 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "1628"; repStart "-2963"; chr3 rmsk exon 98138482 98139046 3072 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "1953"; repFamily "ERV1"; repLeft "1383"; repStart "-3403"; chr3 rmsk exon 98139357 98139568 3072 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "1382"; repFamily "ERV1"; repLeft "1170"; repStart "-3974"; chr3 rmsk exon 98139615 98139861 691 - . gene_id "MER34B_3q11.2a"; transcript_id "MER34B_3q11.2a"; locus "MER34B_3q11.2a"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0067"; repClass "LTR"; repEnd "413"; repFamily "ERV1"; repLeft "156"; repStart "-172"; ### ERVLB4_3q11.2d ### chr3 rmsk gene 98160635 98164524 . - . gene_id "ERVLB4_3q11.2d"; transcript_id "ERVLB4_3q11.2d"; locus "ERVLB4_3q11.2d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0346"; model_cov "1482"; model_pct "25.9"; chr3 rmsk exon 98160635 98161592 4097 - . gene_id "ERVLB4_3q11.2d"; transcript_id "ERVLB4_3q11.2d"; locus "ERVLB4_3q11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0346"; repClass "LTR"; repEnd "4985"; repFamily "ERVL"; repLeft "3973"; repStart "-729"; chr3 rmsk exon 98164061 98164524 2238 - . gene_id "ERVLB4_3q11.2d"; transcript_id "ERVLB4_3q11.2d"; locus "ERVLB4_3q11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0346"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "3499"; repStart "-1745"; ### MER34B_3q11.2b ### chr3 rmsk gene 98173028 98174082 . - . gene_id "MER34B_3q11.2b"; transcript_id "MER34B_3q11.2b"; locus "MER34B_3q11.2b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0070"; model_cov "1039"; model_pct "19.4"; chr3 rmsk exon 98173028 98173304 830 - . gene_id "MER34B_3q11.2b"; transcript_id "MER34B_3q11.2b"; locus "MER34B_3q11.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0070"; repClass "LTR"; repEnd "4133"; repFamily "ERV1"; repLeft "3849"; repStart "-1223"; chr3 rmsk exon 98173331 98174082 1366 - . gene_id "MER34B_3q11.2b"; transcript_id "MER34B_3q11.2b"; locus "MER34B_3q11.2b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0070"; repClass "LTR"; repEnd "3634"; repFamily "ERV1"; repLeft "2879"; repStart "-1722"; ### MER34B_3q11.2c ### chr3 rmsk gene 98180251 98182577 . - . gene_id "MER34B_3q11.2c"; transcript_id "MER34B_3q11.2c"; locus "MER34B_3q11.2c"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0071"; model_cov "1725"; model_pct "32.2"; chr3 rmsk exon 98180251 98181739 3246 - . gene_id "MER34B_3q11.2c"; transcript_id "MER34B_3q11.2c"; locus "MER34B_3q11.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0071"; repClass "LTR"; repEnd "2896"; repFamily "ERV1"; repLeft "1373"; repStart "-2460"; chr3 rmsk exon 98182037 98182238 3246 - . gene_id "MER34B_3q11.2c"; transcript_id "MER34B_3q11.2c"; locus "MER34B_3q11.2c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0071"; repClass "LTR"; repEnd "1372"; repFamily "ERV1"; repLeft "1170"; repStart "-3984"; chr3 rmsk exon 98182286 98182577 647 - . gene_id "MER34B_3q11.2c"; transcript_id "MER34B_3q11.2c"; locus "MER34B_3q11.2c"; repName "MER34C"; geneRegion "ltr"; locid "MER34B-int_0071"; repClass "LTR"; repEnd "378"; repFamily "ERV1"; repLeft "61"; repStart "-173"; ### HUERSP3B_3q11.2 ### chr3 rmsk gene 98186061 98189085 . - . gene_id "HUERSP3B_3q11.2"; transcript_id "HUERSP3B_3q11.2"; locus "HUERSP3B_3q11.2"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0027"; model_cov "2634"; model_pct "35.5"; chr3 rmsk exon 98186061 98186482 2805 - . gene_id "HUERSP3B_3q11.2"; transcript_id "HUERSP3B_3q11.2"; locus "HUERSP3B_3q11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0027"; repClass "LTR"; repEnd "3544"; repFamily "ERV1"; repLeft "3238"; repStart "-3874"; chr3 rmsk exon 98186916 98188946 11690 - . gene_id "HUERSP3B_3q11.2"; transcript_id "HUERSP3B_3q11.2"; locus "HUERSP3B_3q11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0027"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "409"; repStart "-4776"; chr3 rmsk exon 98188950 98189046 365 - . gene_id "HUERSP3B_3q11.2"; transcript_id "HUERSP3B_3q11.2"; locus "HUERSP3B_3q11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0027"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "1"; repStart "-7322"; chr3 rmsk exon 98189047 98189085 296 - . gene_id "HUERSP3B_3q11.2"; transcript_id "HUERSP3B_3q11.2"; locus "HUERSP3B_3q11.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0027"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "606"; repStart "0"; ### HERVH_3q11.2b ### chr3 rmsk gene 98191088 98196791 . + . gene_id "HERVH_3q11.2b"; transcript_id "HERVH_3q11.2b"; locus "HERVH_3q11.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0270"; model_cov "5332"; model_pct "69.1"; chr3 rmsk exon 98191088 98191462 2258 + . gene_id "HERVH_3q11.2b"; transcript_id "HERVH_3q11.2b"; locus "HERVH_3q11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0270"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 98191465 98196237 19307 + . gene_id "HERVH_3q11.2b"; transcript_id "HERVH_3q11.2b"; locus "HERVH_3q11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0270"; repClass "LTR"; repEnd "6201"; repFamily "ERV1"; repLeft "-1512"; repStart "1060"; chr3 rmsk exon 98196234 98196415 1091 + . gene_id "HERVH_3q11.2b"; transcript_id "HERVH_3q11.2b"; locus "HERVH_3q11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0270"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7522"; chr3 rmsk exon 98196416 98196791 2245 + . gene_id "HERVH_3q11.2b"; transcript_id "HERVH_3q11.2b"; locus "HERVH_3q11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0270"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_3q11.2e ### chr3 rmsk gene 98200527 98203873 . - . gene_id "ERVLB4_3q11.2e"; transcript_id "ERVLB4_3q11.2e"; locus "ERVLB4_3q11.2e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0347"; model_cov "1057"; model_pct "18.5"; chr3 rmsk exon 98200527 98201054 2321 - . gene_id "ERVLB4_3q11.2e"; transcript_id "ERVLB4_3q11.2e"; locus "ERVLB4_3q11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0347"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "4003"; repStart "-1128"; chr3 rmsk exon 98203403 98203873 2216 - . gene_id "ERVLB4_3q11.2e"; transcript_id "ERVLB4_3q11.2e"; locus "ERVLB4_3q11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0347"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "3495"; repStart "-1745"; ### MER34B_3q11.2d ### chr3 rmsk gene 98241688 98243628 . - . gene_id "MER34B_3q11.2d"; transcript_id "MER34B_3q11.2d"; locus "MER34B_3q11.2d"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0073"; model_cov "2014"; model_pct "37.6"; chr3 rmsk exon 98241688 98242180 1771 - . gene_id "MER34B_3q11.2d"; transcript_id "MER34B_3q11.2d"; locus "MER34B_3q11.2d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0073"; repClass "LTR"; repEnd "4791"; repFamily "ERV1"; repLeft "4289"; repStart "-565"; chr3 rmsk exon 98242367 98243628 1811 - . gene_id "MER34B_3q11.2d"; transcript_id "MER34B_3q11.2d"; locus "MER34B_3q11.2d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0073"; repClass "LTR"; repEnd "3276"; repFamily "ERV1"; repLeft "1764"; repStart "-2080"; ### HERVH_3q11.2c ### chr3 rmsk gene 98243922 98249844 . + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0271"; model_cov "4889"; model_pct "63.4"; chr3 rmsk exon 98243922 98244002 267 + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0271"; repClass "LTR"; repEnd "284"; repFamily "ERV1"; repLeft "-188"; repStart "210"; chr3 rmsk exon 98244017 98244331 1480 + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0271"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "142"; chr3 rmsk exon 98244332 98247104 5426 + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0271"; repClass "LTR"; repEnd "2707"; repFamily "ERV1"; repLeft "-5006"; repStart "1"; chr3 rmsk exon 98247223 98249393 10356 + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0271"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5530"; chr3 rmsk exon 98249549 98249844 1481 + . gene_id "HERVH_3q11.2c"; transcript_id "HERVH_3q11.2c"; locus "HERVH_3q11.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0271"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "163"; ### MER34B_3q11.2e ### chr3 rmsk gene 98265760 98266450 . - . gene_id "MER34B_3q11.2e"; transcript_id "MER34B_3q11.2e"; locus "MER34B_3q11.2e"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0074"; model_cov "684"; model_pct "12.8"; chr3 rmsk exon 98265760 98266450 1179 - . gene_id "MER34B_3q11.2e"; transcript_id "MER34B_3q11.2e"; locus "MER34B_3q11.2e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0074"; repClass "LTR"; repEnd "3069"; repFamily "ERV1"; repLeft "2385"; repStart "-2287"; ### MER34B_3q11.2f ### chr3 rmsk gene 98272722 98273927 . - . gene_id "MER34B_3q11.2f"; transcript_id "MER34B_3q11.2f"; locus "MER34B_3q11.2f"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0075"; model_cov "886"; model_pct "16.5"; chr3 rmsk exon 98272722 98273557 1829 - . gene_id "MER34B_3q11.2f"; transcript_id "MER34B_3q11.2f"; locus "MER34B_3q11.2f"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0075"; repClass "LTR"; repEnd "2077"; repFamily "ERV1"; repLeft "1191"; repStart "-3279"; chr3 rmsk exon 98273633 98273927 748 - . gene_id "MER34B_3q11.2f"; transcript_id "MER34B_3q11.2f"; locus "MER34B_3q11.2f"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0075"; repClass "LTR"; repEnd "413"; repFamily "ERV1"; repLeft "60"; repStart "-172"; ### ERVLB4_3q11.2f ### chr3 rmsk gene 98318750 98322074 . - . gene_id "ERVLB4_3q11.2f"; transcript_id "ERVLB4_3q11.2f"; locus "ERVLB4_3q11.2f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0349"; model_cov "2711"; model_pct "47.4"; chr3 rmsk exon 98318750 98319055 1509 - . gene_id "ERVLB4_3q11.2f"; transcript_id "ERVLB4_3q11.2f"; locus "ERVLB4_3q11.2f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0349"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "7"; repStart "-202"; chr3 rmsk exon 98319080 98319450 1677 - . gene_id "ERVLB4_3q11.2f"; transcript_id "ERVLB4_3q11.2f"; locus "ERVLB4_3q11.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0349"; repClass "LTR"; repEnd "5576"; repFamily "ERVL"; repLeft "5191"; repStart "-138"; chr3 rmsk exon 98319450 98320104 11585 - . gene_id "ERVLB4_3q11.2f"; transcript_id "ERVLB4_3q11.2f"; locus "ERVLB4_3q11.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0349"; repClass "LTR"; repEnd "5005"; repFamily "ERVL"; repLeft "4354"; repStart "-709"; chr3 rmsk exon 98320405 98322074 11585 - . gene_id "ERVLB4_3q11.2f"; transcript_id "ERVLB4_3q11.2f"; locus "ERVLB4_3q11.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0349"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "2678"; repStart "-1361"; ### ERVLE_3q11.2j ### chr3 rmsk gene 98340308 98341131 . - . gene_id "ERVLE_3q11.2j"; transcript_id "ERVLE_3q11.2j"; locus "ERVLE_3q11.2j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0792"; model_cov "834"; model_pct "14.7"; chr3 rmsk exon 98340308 98341131 2469 - . gene_id "ERVLE_3q11.2j"; transcript_id "ERVLE_3q11.2j"; locus "ERVLE_3q11.2j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0792"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "4438"; repStart "-395"; ### MER4_3q11.2b ### chr3 rmsk gene 98366003 98367518 . + . gene_id "MER4_3q11.2b"; transcript_id "MER4_3q11.2b"; locus "MER4_3q11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0151"; model_cov "1277"; model_pct "19.4"; chr3 rmsk exon 98366003 98367282 7363 + . gene_id "MER4_3q11.2b"; transcript_id "MER4_3q11.2b"; locus "MER4_3q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0151"; repClass "LTR"; repEnd "5209"; repFamily "ERV1"; repLeft "-1389"; repStart "3932"; chr3 rmsk exon 98367298 98367518 1491 + . gene_id "MER4_3q11.2b"; transcript_id "MER4_3q11.2b"; locus "MER4_3q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0151"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-3"; repStart "246"; ### HERVL_3q12.1a ### chr3 rmsk gene 98629266 98632313 . - . gene_id "HERVL_3q12.1a"; transcript_id "HERVL_3q12.1a"; locus "HERVL_3q12.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0278"; model_cov "2472"; model_pct "43.7"; chr3 rmsk exon 98629266 98629431 1213 - . gene_id "HERVL_3q12.1a"; transcript_id "HERVL_3q12.1a"; locus "HERVL_3q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0278"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "276"; repStart "0"; chr3 rmsk exon 98629434 98631866 17574 - . gene_id "HERVL_3q12.1a"; transcript_id "HERVL_3q12.1a"; locus "HERVL_3q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0278"; repClass "LTR"; repEnd "2473"; repFamily "ERVL"; repLeft "1"; repStart "-3181"; chr3 rmsk exon 98631867 98632313 3332 - . gene_id "HERVL_3q12.1a"; transcript_id "HERVL_3q12.1a"; locus "HERVL_3q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0278"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERV4_3q12.1 ### chr3 rmsk gene 99258405 99260461 . - . gene_id "HERV4_3q12.1"; transcript_id "HERV4_3q12.1"; locus "HERV4_3q12.1"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0024"; model_cov "1613"; model_pct "24.7"; chr3 rmsk exon 99258405 99258899 1025 - . gene_id "HERV4_3q12.1"; transcript_id "HERV4_3q12.1"; locus "HERV4_3q12.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0024"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr3 rmsk exon 99258900 99259676 5248 - . gene_id "HERV4_3q12.1"; transcript_id "HERV4_3q12.1"; locus "HERV4_3q12.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0024"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "5758"; repStart "0"; chr3 rmsk exon 99259665 99260461 5360 - . gene_id "HERV4_3q12.1"; transcript_id "HERV4_3q12.1"; locus "HERV4_3q12.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0024"; repClass "LTR"; repEnd "1913"; repFamily "ERV1"; repLeft "1081"; repStart "-4626"; ### HERVL_3q12.1b ### chr3 rmsk gene 99260466 99264067 . - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0280"; model_cov "2799"; model_pct "49.5"; chr3 rmsk exon 99260466 99260508 243 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "394"; repStart "-8"; chr3 rmsk exon 99260746 99261561 6672 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "4335"; repStart "-472"; chr3 rmsk exon 99261561 99261744 1421 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "3313"; repStart "-2144"; chr3 rmsk exon 99261743 99262836 7919 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "2074"; repFamily "ERVL"; repLeft "1012"; repStart "-3580"; chr3 rmsk exon 99262842 99263539 5363 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "694"; repFamily "ERVL"; repLeft "1"; repStart "-4960"; chr3 rmsk exon 99263540 99263575 3031 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "400"; repStart "0"; chr3 rmsk exon 99263674 99264067 3031 - . gene_id "HERVL_3q12.1b"; transcript_id "HERVL_3q12.1b"; locus "HERVL_3q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0280"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-45"; ### ERV316A3_3q12.1a ### chr3 rmsk gene 99390080 99395019 . - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0506"; model_cov "4170"; model_pct "79.8"; chr3 rmsk exon 99390080 99390827 1097 - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0506"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "4188"; repStart "-415"; chr3 rmsk exon 99391044 99391614 940 - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0506"; repClass "LTR"; repEnd "4187"; repFamily "ERVL"; repLeft "3413"; repStart "-1039"; chr3 rmsk exon 99391616 99393917 5075 - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0506"; repClass "LTR"; repEnd "3031"; repFamily "ERVL"; repLeft "699"; repStart "-2195"; chr3 rmsk exon 99394136 99394567 833 - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0506"; repClass "LTR"; repEnd "680"; repFamily "ERVL"; repLeft "239"; repStart "-4546"; chr3 rmsk exon 99394586 99395019 1449 - . gene_id "ERV316A3_3q12.1a"; transcript_id "ERV316A3_3q12.1a"; locus "ERV316A3_3q12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0506"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### ERV316A3_3q12.1b ### chr3 rmsk gene 99466687 99467875 . - . gene_id "ERV316A3_3q12.1b"; transcript_id "ERV316A3_3q12.1b"; locus "ERV316A3_3q12.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0508"; model_cov "657"; model_pct "12.6"; chr3 rmsk exon 99466687 99467118 1116 - . gene_id "ERV316A3_3q12.1b"; transcript_id "ERV316A3_3q12.1b"; locus "ERV316A3_3q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0508"; repClass "LTR"; repEnd "1146"; repFamily "ERVL"; repLeft "699"; repStart "-4080"; chr3 rmsk exon 99467203 99467400 383 - . gene_id "ERV316A3_3q12.1b"; transcript_id "ERV316A3_3q12.1b"; locus "ERV316A3_3q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0508"; repClass "LTR"; repEnd "305"; repFamily "ERVL"; repLeft "95"; repStart "-4921"; chr3 rmsk exon 99467524 99467875 975 - . gene_id "ERV316A3_3q12.1b"; transcript_id "ERV316A3_3q12.1b"; locus "ERV316A3_3q12.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0508"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "38"; repStart "-5"; ### ERV316A3_3q12.1c ### chr3 rmsk gene 99608527 99612272 . - . gene_id "ERV316A3_3q12.1c"; transcript_id "ERV316A3_3q12.1c"; locus "ERV316A3_3q12.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0509"; model_cov "676"; model_pct "12.9"; chr3 rmsk exon 99608527 99608990 1522 - . gene_id "ERV316A3_3q12.1c"; transcript_id "ERV316A3_3q12.1c"; locus "ERV316A3_3q12.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0509"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "4"; repStart "-1"; chr3 rmsk exon 99609056 99609530 1033 - . gene_id "ERV316A3_3q12.1c"; transcript_id "ERV316A3_3q12.1c"; locus "ERV316A3_3q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0509"; repClass "LTR"; repEnd "5170"; repFamily "ERVL"; repLeft "4676"; repStart "-56"; chr3 rmsk exon 99611984 99612158 262 - . gene_id "ERV316A3_3q12.1c"; transcript_id "ERV316A3_3q12.1c"; locus "ERV316A3_3q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0509"; repClass "LTR"; repEnd "4249"; repFamily "ERVL"; repLeft "4067"; repStart "-977"; chr3 rmsk exon 99612159 99612272 452 - . gene_id "ERV316A3_3q12.1c"; transcript_id "ERV316A3_3q12.1c"; locus "ERV316A3_3q12.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0509"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "1"; repStart "-341"; ### ERV316A3_3q12.1d ### chr3 rmsk gene 99808942 99811648 . - . gene_id "ERV316A3_3q12.1d"; transcript_id "ERV316A3_3q12.1d"; locus "ERV316A3_3q12.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0510"; model_cov "2777"; model_pct "53.1"; chr3 rmsk exon 99808942 99811648 4464 - . gene_id "ERV316A3_3q12.1d"; transcript_id "ERV316A3_3q12.1d"; locus "ERV316A3_3q12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0510"; repClass "LTR"; repEnd "3844"; repFamily "ERVL"; repLeft "1067"; repStart "-1382"; ### HERVL_3q12.1c ### chr3 rmsk gene 100237370 100243393 . + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_0281"; model_cov "4687"; model_pct "82.9"; chr3 rmsk exon 100237370 100237493 915 + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0281"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-5204"; repStart "327"; chr3 rmsk exon 100237713 100238103 2674 + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0281"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-50"; repStart "1"; chr3 rmsk exon 100238117 100238173 33699 + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0281"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4510"; repStart "1089"; chr3 rmsk exon 100238476 100242960 33699 + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0281"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1145"; chr3 rmsk exon 100242961 100243393 3004 + . gene_id "HERVL_3q12.1c"; transcript_id "HERVL_3q12.1c"; locus "HERVL_3q12.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0281"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_3q12.2 ### chr3 rmsk gene 100442292 100451599 . - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0152"; model_cov "5964"; model_pct "90.4"; chr3 rmsk exon 100442292 100442759 3571 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0152"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 100442761 100444990 16328 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0152"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4281"; repStart "0"; chr3 rmsk exon 100445278 100445649 16328 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0152"; repClass "LTR"; repEnd "4280"; repFamily "ERV1"; repLeft "3913"; repStart "-2318"; chr3 rmsk exon 100447628 100448134 2686 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0152"; repClass "LTR"; repEnd "3278"; repFamily "ERV1"; repLeft "2737"; repStart "-3320"; chr3 rmsk exon 100448377 100450332 12454 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0152"; repClass "LTR"; repEnd "2496"; repFamily "ERV1"; repLeft "263"; repStart "-4102"; chr3 rmsk exon 100450637 100451113 12454 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0152"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "1"; repStart "-6091"; chr3 rmsk exon 100451117 100451599 3467 - . gene_id "MER4_3q12.2"; transcript_id "MER4_3q12.2"; locus "MER4_3q12.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0152"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_3q12.2 ### chr3 rmsk gene 100466409 100472339 . + . gene_id "LTR25_3q12.2"; transcript_id "LTR25_3q12.2"; locus "LTR25_3q12.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0025"; model_cov "4691"; model_pct "65.3"; chr3 rmsk exon 100466409 100466467 269 + . gene_id "LTR25_3q12.2"; transcript_id "LTR25_3q12.2"; locus "LTR25_3q12.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0025"; repClass "LTR"; repEnd "494"; repFamily "ERV1"; repLeft "-6694"; repStart "434"; chr3 rmsk exon 100466529 100467533 3367 + . gene_id "LTR25_3q12.2"; transcript_id "LTR25_3q12.2"; locus "LTR25_3q12.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0025"; repClass "LTR"; repEnd "1553"; repFamily "ERV1"; repLeft "-5635"; repStart "300"; chr3 rmsk exon 100467605 100468933 3941 + . gene_id "LTR25_3q12.2"; transcript_id "LTR25_3q12.2"; locus "LTR25_3q12.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0025"; repClass "LTR"; repEnd "2555"; repFamily "ERV1"; repLeft "-4633"; repStart "260"; chr3 rmsk exon 100471224 100472339 5961 + . gene_id "LTR25_3q12.2"; transcript_id "LTR25_3q12.2"; locus "LTR25_3q12.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0025"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-1982"; repStart "4123"; ### HERVL40_3q12.2 ### chr3 rmsk gene 100486011 100490844 . - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0073"; model_cov "1432"; model_pct "25.9"; chr3 rmsk exon 100486011 100486494 1716 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 100486502 100486779 1126 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "5522"; repFamily "ERVL"; repLeft "5242"; repStart "-8"; chr3 rmsk exon 100486927 100486987 329 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "5222"; repStart "-248"; chr3 rmsk exon 100488041 100488295 263 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "4953"; repStart "-328"; chr3 rmsk exon 100488486 100489210 1904 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "3980"; repStart "-870"; chr3 rmsk exon 100490684 100490844 922 - . gene_id "HERVL40_3q12.2"; transcript_id "HERVL40_3q12.2"; locus "HERVL40_3q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0073"; repClass "LTR"; repEnd "3938"; repFamily "ERVL"; repLeft "3775"; repStart "-1592"; ### MER41_3q12.2 ### chr3 rmsk gene 100581635 100587331 . - . gene_id "MER41_3q12.2"; transcript_id "MER41_3q12.2"; locus "MER41_3q12.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0093"; model_cov "4384"; model_pct "73.7"; chr3 rmsk exon 100581635 100582111 15629 - . gene_id "MER41_3q12.2"; transcript_id "MER41_3q12.2"; locus "MER41_3q12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0093"; repClass "LTR"; repEnd "5366"; repFamily "ERV1"; repLeft "5303"; repStart "-580"; chr3 rmsk exon 100582417 100585873 15629 - . gene_id "MER41_3q12.2"; transcript_id "MER41_3q12.2"; locus "MER41_3q12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0093"; repClass "LTR"; repEnd "5302"; repFamily "ERV1"; repLeft "2061"; repStart "-644"; chr3 rmsk exon 100586170 100586204 15103 - . gene_id "MER41_3q12.2"; transcript_id "MER41_3q12.2"; locus "MER41_3q12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0093"; repClass "LTR"; repEnd "1743"; repFamily "ERV1"; repLeft "1709"; repStart "-4203"; chr3 rmsk exon 100586202 100587331 5475 - . gene_id "MER41_3q12.2"; transcript_id "MER41_3q12.2"; locus "MER41_3q12.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0093"; repClass "LTR"; repEnd "730"; repFamily "ERV1"; repLeft "-316"; repStart "-5216"; ### ERVL_3q12.2 ### chr3 rmsk gene 101036422 101038311 . + . gene_id "ERVL_3q12.2"; transcript_id "ERVL_3q12.2"; locus "ERVL_3q12.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0081"; model_cov "1024"; model_pct "17.8"; chr3 rmsk exon 101036422 101037429 6346 + . gene_id "ERVL_3q12.2"; transcript_id "ERVL_3q12.2"; locus "ERVL_3q12.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0081"; repClass "LTR"; repEnd "5567"; repFamily "ERVL"; repLeft "-190"; repStart "4543"; chr3 rmsk exon 101037776 101038311 2618 + . gene_id "ERVL_3q12.2"; transcript_id "ERVL_3q12.2"; locus "ERVL_3q12.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0081"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-39"; repStart "-33"; ### HERVS71_3q12.3 ### chr3 rmsk gene 101632045 101642056 . + . gene_id "HERVS71_3q12.3"; transcript_id "HERVS71_3q12.3"; locus "HERVS71_3q12.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0007"; model_cov "8905"; model_pct "99.2"; chr3 rmsk exon 101632045 101632597 3604 + . gene_id "HERVS71_3q12.3"; transcript_id "HERVS71_3q12.3"; locus "HERVS71_3q12.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0007"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 101632600 101641508 52313 + . gene_id "HERVS71_3q12.3"; transcript_id "HERVS71_3q12.3"; locus "HERVS71_3q12.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0007"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "4"; chr3 rmsk exon 101641509 101642056 3707 + . gene_id "HERVS71_3q12.3"; transcript_id "HERVS71_3q12.3"; locus "HERVS71_3q12.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0007"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_3q12.3 ### chr3 rmsk gene 101691893 101701015 . + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0023"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 101691893 101692861 8050 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 101692862 101698340 22220 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr3 rmsk exon 101698340 101699951 14507 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr3 rmsk exon 101700047 101701015 8320 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_3q12.3 ### chr3 rmsk gene 102000517 102005700 . - . gene_id "ERVLB4_3q12.3"; transcript_id "ERVLB4_3q12.3"; locus "ERVLB4_3q12.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0351"; model_cov "3888"; model_pct "68.0"; chr3 rmsk exon 102000517 102001741 19026 - . gene_id "ERVLB4_3q12.3"; transcript_id "ERVLB4_3q12.3"; locus "ERVLB4_3q12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0351"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "2677"; repStart "-1816"; chr3 rmsk exon 102002044 102004063 19026 - . gene_id "ERVLB4_3q12.3"; transcript_id "ERVLB4_3q12.3"; locus "ERVLB4_3q12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0351"; repClass "LTR"; repEnd "2676"; repFamily "ERVL"; repLeft "529"; repStart "-3038"; chr3 rmsk exon 102004707 102005218 2685 - . gene_id "ERVLB4_3q12.3"; transcript_id "ERVLB4_3q12.3"; locus "ERVLB4_3q12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0351"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "1"; repStart "-5193"; chr3 rmsk exon 102005393 102005700 1338 - . gene_id "ERVLB4_3q12.3"; transcript_id "ERVLB4_3q12.3"; locus "ERVLB4_3q12.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0351"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "171"; repStart "-51"; ### ERV316A3_3q12.3 ### chr3 rmsk gene 102005731 102006471 . - . gene_id "ERV316A3_3q12.3"; transcript_id "ERV316A3_3q12.3"; locus "ERV316A3_3q12.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0511"; model_cov "752"; model_pct "14.4"; chr3 rmsk exon 102005731 102006471 1917 - . gene_id "ERV316A3_3q12.3"; transcript_id "ERV316A3_3q12.3"; locus "ERV316A3_3q12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0511"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "2630"; repStart "-1844"; ### ERVLE_3q12.3a ### chr3 rmsk gene 102353786 102356369 . + . gene_id "ERVLE_3q12.3a"; transcript_id "ERVLE_3q12.3a"; locus "ERVLE_3q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0793"; model_cov "2040"; model_pct "36.0"; chr3 rmsk exon 102353786 102354124 1048 + . gene_id "ERVLE_3q12.3a"; transcript_id "ERVLE_3q12.3a"; locus "ERVLE_3q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0793"; repClass "LTR"; repEnd "3637"; repFamily "ERVL"; repLeft "-2030"; repStart "3297"; chr3 rmsk exon 102354142 102355535 4062 + . gene_id "ERVLE_3q12.3a"; transcript_id "ERVLE_3q12.3a"; locus "ERVLE_3q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0793"; repClass "LTR"; repEnd "5131"; repFamily "ERVL"; repLeft "-536"; repStart "3692"; chr3 rmsk exon 102356102 102356369 473 + . gene_id "ERVLE_3q12.3a"; transcript_id "ERVLE_3q12.3a"; locus "ERVLE_3q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0793"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5406"; ### HERVL18_3q12.3 ### chr3 rmsk gene 102735696 102742206 . + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0034"; model_cov "5829"; model_pct "96.4"; chr3 rmsk exon 102735696 102736046 2429 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 102736054 102737655 8668 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-4439"; repStart "2"; chr3 rmsk exon 102737648 102737703 315 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "1381"; repFamily "ERVL"; repLeft "-4666"; repStart "1327"; chr3 rmsk exon 102737741 102738584 5627 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "1605"; chr3 rmsk exon 102738584 102741853 20836 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "6042"; repFamily "ERVL"; repLeft "-5"; repStart "2720"; chr3 rmsk exon 102741859 102742206 2345 + . gene_id "HERVL18_3q12.3"; transcript_id "HERVL18_3q12.3"; locus "HERVL18_3q12.3"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0034"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_3q12.3b ### chr3 rmsk gene 102810917 102811511 . - . gene_id "ERVLE_3q12.3b"; transcript_id "ERVLE_3q12.3b"; locus "ERVLE_3q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0794"; model_cov "597"; model_pct "10.5"; chr3 rmsk exon 102810917 102811511 731 - . gene_id "ERVLE_3q12.3b"; transcript_id "ERVLE_3q12.3b"; locus "ERVLE_3q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0794"; repClass "LTR"; repEnd "921"; repFamily "ERVL"; repLeft "324"; repStart "-4746"; ### HERVL40_3q12.3 ### chr3 rmsk gene 103039407 103040253 . - . gene_id "HERVL40_3q12.3"; transcript_id "HERVL40_3q12.3"; locus "HERVL40_3q12.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0074"; model_cov "560"; model_pct "10.1"; chr3 rmsk exon 103039407 103039716 813 - . gene_id "HERVL40_3q12.3"; transcript_id "HERVL40_3q12.3"; locus "HERVL40_3q12.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0074"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "150"; repStart "-1"; chr3 rmsk exon 103039727 103040253 1592 - . gene_id "HERVL40_3q12.3"; transcript_id "HERVL40_3q12.3"; locus "HERVL40_3q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0074"; repClass "LTR"; repEnd "5016"; repFamily "ERVL"; repLeft "4456"; repStart "-514"; ### PRIMA41_3q12.3 ### chr3 rmsk gene 103051056 103055623 . - . gene_id "PRIMA41_3q12.3"; transcript_id "PRIMA41_3q12.3"; locus "PRIMA41_3q12.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0033"; model_cov "3866"; model_pct "49.8"; chr3 rmsk exon 103051056 103051484 1271 - . gene_id "PRIMA41_3q12.3"; transcript_id "PRIMA41_3q12.3"; locus "PRIMA41_3q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0033"; repClass "LTR"; repEnd "6248"; repFamily "ERV1"; repLeft "5822"; repStart "-1508"; chr3 rmsk exon 103051778 103052880 1271 - . gene_id "PRIMA41_3q12.3"; transcript_id "PRIMA41_3q12.3"; locus "PRIMA41_3q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0033"; repClass "LTR"; repEnd "5821"; repFamily "ERV1"; repLeft "4692"; repStart "-1935"; chr3 rmsk exon 103052962 103054620 1048 - . gene_id "PRIMA41_3q12.3"; transcript_id "PRIMA41_3q12.3"; locus "PRIMA41_3q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0033"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "2723"; repStart "-3386"; chr3 rmsk exon 103054914 103055623 864 - . gene_id "PRIMA41_3q12.3"; transcript_id "PRIMA41_3q12.3"; locus "PRIMA41_3q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0033"; repClass "LTR"; repEnd "2402"; repFamily "ERV1"; repLeft "1738"; repStart "-5354"; ### ERV316A3_3q13.11a ### chr3 rmsk gene 103191678 103194268 . + . gene_id "ERV316A3_3q13.11a"; transcript_id "ERV316A3_3q13.11a"; locus "ERV316A3_3q13.11a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0512"; model_cov "2319"; model_pct "44.4"; chr3 rmsk exon 103191678 103192639 2617 + . gene_id "ERV316A3_3q13.11a"; transcript_id "ERV316A3_3q13.11a"; locus "ERV316A3_3q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0512"; repClass "LTR"; repEnd "3428"; repFamily "ERVL"; repLeft "-1798"; repStart "2436"; chr3 rmsk exon 103192996 103193987 2617 + . gene_id "ERV316A3_3q13.11a"; transcript_id "ERV316A3_3q13.11a"; locus "ERV316A3_3q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0512"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-781"; repStart "3429"; chr3 rmsk exon 103193968 103194268 783 + . gene_id "ERV316A3_3q13.11a"; transcript_id "ERV316A3_3q13.11a"; locus "ERV316A3_3q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0512"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "-182"; repStart "4733"; ### HML3_3q13.11a ### chr3 rmsk gene 103208941 103215975 . + . gene_id "HML3_3q13.11a"; transcript_id "HML3_3q13.11a"; locus "HML3_3q13.11a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0041"; model_cov "6020"; model_pct "100.0"; chr3 rmsk exon 103208941 103209446 3732 + . gene_id "HML3_3q13.11a"; transcript_id "HML3_3q13.11a"; locus "HML3_3q13.11a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0041"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 103209447 103215466 46097 + . gene_id "HML3_3q13.11a"; transcript_id "HML3_3q13.11a"; locus "HML3_3q13.11a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0041"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 103215467 103215975 3938 + . gene_id "HML3_3q13.11a"; transcript_id "HML3_3q13.11a"; locus "HML3_3q13.11a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0041"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_3q13.11a ### chr3 rmsk gene 103278519 103284484 . - . gene_id "HERVL_3q13.11a"; transcript_id "HERVL_3q13.11a"; locus "HERVL_3q13.11a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0282"; model_cov "4032"; model_pct "71.3"; chr3 rmsk exon 103278519 103280285 13247 - . gene_id "HERVL_3q13.11a"; transcript_id "HERVL_3q13.11a"; locus "HERVL_3q13.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0282"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "2265"; repStart "-1613"; chr3 rmsk exon 103281908 103284079 10245 - . gene_id "HERVL_3q13.11a"; transcript_id "HERVL_3q13.11a"; locus "HERVL_3q13.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0282"; repClass "LTR"; repEnd "2197"; repFamily "ERVL"; repLeft "-59"; repStart "-3457"; chr3 rmsk exon 103284080 103284484 2374 - . gene_id "HERVL_3q13.11a"; transcript_id "HERVL_3q13.11a"; locus "HERVL_3q13.11a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0282"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_3q13.11b ### chr3 rmsk gene 103356358 103357465 . + . gene_id "ERV316A3_3q13.11b"; transcript_id "ERV316A3_3q13.11b"; locus "ERV316A3_3q13.11b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0513"; model_cov "1340"; model_pct "25.6"; chr3 rmsk exon 103356358 103357465 1009 + . gene_id "ERV316A3_3q13.11b"; transcript_id "ERV316A3_3q13.11b"; locus "ERV316A3_3q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0513"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "-1699"; repStart "2187"; ### HERVL_3q13.11b ### chr3 rmsk gene 103594502 103601017 . - . gene_id "HERVL_3q13.11b"; transcript_id "HERVL_3q13.11b"; locus "HERVL_3q13.11b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0283"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 103594502 103594936 2775 - . gene_id "HERVL_3q13.11b"; transcript_id "HERVL_3q13.11b"; locus "HERVL_3q13.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0283"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 103594937 103600585 42142 - . gene_id "HERVL_3q13.11b"; transcript_id "HERVL_3q13.11b"; locus "HERVL_3q13.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0283"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 103600586 103601017 3074 - . gene_id "HERVL_3q13.11b"; transcript_id "HERVL_3q13.11b"; locus "HERVL_3q13.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0283"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_3q13.11a ### chr3 rmsk gene 103729504 103731400 . - . gene_id "ERVLE_3q13.11a"; transcript_id "ERVLE_3q13.11a"; locus "ERVLE_3q13.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0796"; model_cov "1001"; model_pct "17.7"; chr3 rmsk exon 103729504 103729756 492 - . gene_id "ERVLE_3q13.11a"; transcript_id "ERVLE_3q13.11a"; locus "ERVLE_3q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0796"; repClass "LTR"; repEnd "4267"; repFamily "ERVL"; repLeft "3909"; repStart "-1400"; chr3 rmsk exon 103729773 103729945 330 - . gene_id "ERVLE_3q13.11a"; transcript_id "ERVLE_3q13.11a"; locus "ERVLE_3q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0796"; repClass "LTR"; repEnd "3958"; repFamily "ERVL"; repLeft "3773"; repStart "-1709"; chr3 rmsk exon 103730955 103731400 851 - . gene_id "ERVLE_3q13.11a"; transcript_id "ERVLE_3q13.11a"; locus "ERVLE_3q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0796"; repClass "LTR"; repEnd "3567"; repFamily "ERVL"; repLeft "3109"; repStart "-2100"; ### ERVL_3q13.11 ### chr3 rmsk gene 103744331 103746855 . - . gene_id "ERVL_3q13.11"; transcript_id "ERVL_3q13.11"; locus "ERVL_3q13.11"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0083"; model_cov "2128"; model_pct "37.0"; chr3 rmsk exon 103744331 103744738 1897 - . gene_id "ERVL_3q13.11"; transcript_id "ERVL_3q13.11"; locus "ERVL_3q13.11"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0083"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "2"; repStart "-130"; chr3 rmsk exon 103744740 103746855 11156 - . gene_id "ERVL_3q13.11"; transcript_id "ERVL_3q13.11"; locus "ERVL_3q13.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0083"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3629"; repStart "0"; ### HUERSP2_3q13.11 ### chr3 rmsk gene 103988897 103993299 . - . gene_id "HUERSP2_3q13.11"; transcript_id "HUERSP2_3q13.11"; locus "HUERSP2_3q13.11"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0029"; model_cov "3063"; model_pct "99.2"; chr3 rmsk exon 103988897 103989421 3224 - . gene_id "HUERSP2_3q13.11"; transcript_id "HUERSP2_3q13.11"; locus "HUERSP2_3q13.11"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0029"; repClass "LTR"; repEnd "569"; repFamily "ERV1"; repLeft "1"; repStart "-255"; chr3 rmsk exon 103989422 103992459 16868 - . gene_id "HUERSP2_3q13.11"; transcript_id "HUERSP2_3q13.11"; locus "HUERSP2_3q13.11"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0029"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "25"; repStart "0"; chr3 rmsk exon 103992484 103993299 4880 - . gene_id "HUERSP2_3q13.11"; transcript_id "HUERSP2_3q13.11"; locus "HUERSP2_3q13.11"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0029"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3q13.11c ### chr3 rmsk gene 104156341 104157699 . - . gene_id "ERV316A3_3q13.11c"; transcript_id "ERV316A3_3q13.11c"; locus "ERV316A3_3q13.11c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0514"; model_cov "1342"; model_pct "25.7"; chr3 rmsk exon 104156341 104156743 1000 - . gene_id "ERV316A3_3q13.11c"; transcript_id "ERV316A3_3q13.11c"; locus "ERV316A3_3q13.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0514"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "4697"; repStart "-112"; chr3 rmsk exon 104156767 104156933 375 - . gene_id "ERV316A3_3q13.11c"; transcript_id "ERV316A3_3q13.11c"; locus "ERV316A3_3q13.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0514"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "4237"; repStart "-829"; chr3 rmsk exon 104156927 104157644 2139 - . gene_id "ERV316A3_3q13.11c"; transcript_id "ERV316A3_3q13.11c"; locus "ERV316A3_3q13.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0514"; repClass "LTR"; repEnd "4450"; repFamily "ERVL"; repLeft "3749"; repStart "-776"; chr3 rmsk exon 104157634 104157699 252 - . gene_id "ERV316A3_3q13.11c"; transcript_id "ERV316A3_3q13.11c"; locus "ERV316A3_3q13.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0514"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "1087"; repStart "-4075"; ### ERV316A3_3q13.11d ### chr3 rmsk gene 104158001 104159204 . - . gene_id "ERV316A3_3q13.11d"; transcript_id "ERV316A3_3q13.11d"; locus "ERV316A3_3q13.11d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0515"; model_cov "539"; model_pct "10.3"; chr3 rmsk exon 104158001 104158161 494 - . gene_id "ERV316A3_3q13.11d"; transcript_id "ERV316A3_3q13.11d"; locus "ERV316A3_3q13.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0515"; repClass "LTR"; repEnd "1350"; repFamily "ERVL"; repLeft "1194"; repStart "-3876"; chr3 rmsk exon 104158282 104158657 865 - . gene_id "ERV316A3_3q13.11d"; transcript_id "ERV316A3_3q13.11d"; locus "ERV316A3_3q13.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0515"; repClass "LTR"; repEnd "748"; repFamily "ERVL"; repLeft "365"; repStart "-4478"; chr3 rmsk exon 104158811 104159204 1063 - . gene_id "ERV316A3_3q13.11d"; transcript_id "ERV316A3_3q13.11d"; locus "ERV316A3_3q13.11d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0515"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "22"; repStart "-2"; ### ERVLE_3q13.11b ### chr3 rmsk gene 104211464 104214604 . + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0798"; model_cov "1990"; model_pct "35.1"; chr3 rmsk exon 104211464 104211913 956 + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0798"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "-2293"; repStart "2937"; chr3 rmsk exon 104211990 104212262 500 + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0798"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "-1364"; repStart "3938"; chr3 rmsk exon 104213256 104213592 517 + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0798"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "-843"; repStart "4475"; chr3 rmsk exon 104213615 104213939 803 + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0798"; repClass "LTR"; repEnd "5201"; repFamily "ERVL"; repLeft "-466"; repStart "4819"; chr3 rmsk exon 104214155 104214604 803 + . gene_id "ERVLE_3q13.11b"; transcript_id "ERVLE_3q13.11b"; locus "ERVLE_3q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0798"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "-23"; repStart "5187"; ### ERVLB4_3q13.11a ### chr3 rmsk gene 104233531 104235425 . + . gene_id "ERVLB4_3q13.11a"; transcript_id "ERVLB4_3q13.11a"; locus "ERVLB4_3q13.11a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0353"; model_cov "1456"; model_pct "25.5"; chr3 rmsk exon 104233531 104234908 6820 + . gene_id "ERVLB4_3q13.11a"; transcript_id "ERVLB4_3q13.11a"; locus "ERVLB4_3q13.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0353"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr3 rmsk exon 104234913 104235425 1442 + . gene_id "ERVLB4_3q13.11a"; transcript_id "ERVLB4_3q13.11a"; locus "ERVLB4_3q13.11a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0353"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-6"; repStart "5"; ### HUERSP3B_3q13.11 ### chr3 rmsk gene 104273436 104280102 . - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0028"; model_cov "5993"; model_pct "80.8"; chr3 rmsk exon 104273436 104273450 16581 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "6931"; repStart "-473"; chr3 rmsk exon 104273504 104275995 16581 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "6930"; repFamily "ERV1"; repLeft "4417"; repStart "-488"; chr3 rmsk exon 104275996 104277126 7054 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "4198"; repFamily "ERV1"; repLeft "3076"; repStart "-3220"; chr3 rmsk exon 104277564 104278074 3747 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "2638"; repFamily "ERV1"; repLeft "2115"; repStart "-4780"; chr3 rmsk exon 104278073 104279352 7725 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "1882"; repFamily "ERV1"; repLeft "615"; repStart "-5536"; chr3 rmsk exon 104279391 104279966 7725 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "300"; repStart "-6564"; chr3 rmsk exon 104279975 104280102 591 - . gene_id "HUERSP3B_3q13.11"; transcript_id "HUERSP3B_3q13.11"; locus "HUERSP3B_3q13.11"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0028"; repClass "LTR"; repEnd "109"; repFamily "ERV1"; repLeft "-18"; repStart "-535"; ### MER101_3q13.11a ### chr3 rmsk gene 104280238 104281427 . - . gene_id "MER101_3q13.11a"; transcript_id "MER101_3q13.11a"; locus "MER101_3q13.11a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0097"; model_cov "1459"; model_pct "22.0"; chr3 rmsk exon 104280238 104281427 2838 - . gene_id "MER101_3q13.11a"; transcript_id "MER101_3q13.11a"; locus "MER101_3q13.11a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0097"; repClass "LTR"; repEnd "4271"; repFamily "ERV1"; repLeft "2812"; repStart "-2368"; ### HML3_3q13.11b ### chr3 rmsk gene 104281432 104287467 . - . gene_id "HML3_3q13.11b"; transcript_id "HML3_3q13.11b"; locus "HML3_3q13.11b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0042"; model_cov "5061"; model_pct "84.1"; chr3 rmsk exon 104281432 104281932 3582 - . gene_id "HML3_3q13.11b"; transcript_id "HML3_3q13.11b"; locus "HML3_3q13.11b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0042"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 104281933 104286310 34885 - . gene_id "HML3_3q13.11b"; transcript_id "HML3_3q13.11b"; locus "HML3_3q13.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0042"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1638"; repStart "0"; chr3 rmsk exon 104286307 104286959 4669 - . gene_id "HML3_3q13.11b"; transcript_id "HML3_3q13.11b"; locus "HML3_3q13.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0042"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "1"; repStart "-5342"; chr3 rmsk exon 104286960 104287467 3913 - . gene_id "HML3_3q13.11b"; transcript_id "HML3_3q13.11b"; locus "HML3_3q13.11b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0042"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER101_3q13.11b ### chr3 rmsk gene 104288063 104289169 . - . gene_id "MER101_3q13.11b"; transcript_id "MER101_3q13.11b"; locus "MER101_3q13.11b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0098"; model_cov "1337"; model_pct "20.1"; chr3 rmsk exon 104288063 104288346 713 - . gene_id "MER101_3q13.11b"; transcript_id "MER101_3q13.11b"; locus "MER101_3q13.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0098"; repClass "LTR"; repEnd "2661"; repFamily "ERV1"; repLeft "2379"; repStart "-3978"; chr3 rmsk exon 104288324 104289053 720 - . gene_id "MER101_3q13.11b"; transcript_id "MER101_3q13.11b"; locus "MER101_3q13.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0098"; repClass "LTR"; repEnd "2961"; repFamily "ERV1"; repLeft "2059"; repStart "-3678"; chr3 rmsk exon 104289023 104289169 454 - . gene_id "MER101_3q13.11b"; transcript_id "MER101_3q13.11b"; locus "MER101_3q13.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0098"; repClass "LTR"; repEnd "13"; repFamily "ERV1"; repLeft "-140"; repStart "-6626"; ### MER4_3q13.11 ### chr3 rmsk gene 104346780 104352104 . + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0153"; model_cov "3762"; model_pct "57.0"; chr3 rmsk exon 104346780 104347223 2702 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0153"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 104347227 104347752 2137 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr3 rmsk exon 104347720 104347826 354 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-740"; chr3 rmsk exon 104347915 104348212 1332 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-4163"; repStart "2119"; chr3 rmsk exon 104349216 104349901 2951 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "-3366"; repStart "2530"; chr3 rmsk exon 104350136 104350990 3160 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2737"; chr3 rmsk exon 104350990 104351974 5595 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0153"; repClass "LTR"; repEnd "4851"; repFamily "ERV1"; repLeft "-1747"; repStart "3837"; chr3 rmsk exon 104351975 104352104 883 + . gene_id "MER4_3q13.11"; transcript_id "MER4_3q13.11"; locus "MER4_3q13.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0153"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "341"; ### MER4B_3q13.11 ### chr3 rmsk gene 104348264 104349159 . + . gene_id "MER4B_3q13.11"; transcript_id "MER4B_3q13.11"; locus "MER4B_3q13.11"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0092"; model_cov "879"; model_pct "13.0"; chr3 rmsk exon 104348264 104348919 4269 + . gene_id "MER4B_3q13.11"; transcript_id "MER4B_3q13.11"; locus "MER4B_3q13.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0092"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "-5912"; repStart "194"; chr3 rmsk exon 104348940 104349159 1318 + . gene_id "MER4B_3q13.11"; transcript_id "MER4B_3q13.11"; locus "MER4B_3q13.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0092"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "922"; ### HERVH_3q13.11 ### chr3 rmsk gene 104439928 104445775 . - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0272"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 104439928 104440361 2641 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 104440362 104440740 2455 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 104440739 104440962 1326 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 104440960 104441609 4118 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 104441612 104442110 3257 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 104442101 104442248 870 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 104442243 104445340 17197 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 104445341 104445775 2593 - . gene_id "HERVH_3q13.11"; transcript_id "HERVH_3q13.11"; locus "HERVH_3q13.11"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0272"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3q13.11c ### chr3 rmsk gene 104449680 104451039 . - . gene_id "HERVL_3q13.11c"; transcript_id "HERVL_3q13.11c"; locus "HERVL_3q13.11c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0285"; model_cov "789"; model_pct "14.0"; chr3 rmsk exon 104449680 104450254 1995 - . gene_id "HERVL_3q13.11c"; transcript_id "HERVL_3q13.11c"; locus "HERVL_3q13.11c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0285"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr3 rmsk exon 104450255 104451039 5374 - . gene_id "HERVL_3q13.11c"; transcript_id "HERVL_3q13.11c"; locus "HERVL_3q13.11c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0285"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4865"; repStart "0"; ### ERVLE_3q13.11c ### chr3 rmsk gene 104457868 104458473 . - . gene_id "ERVLE_3q13.11c"; transcript_id "ERVLE_3q13.11c"; locus "ERVLE_3q13.11c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0799"; model_cov "845"; model_pct "14.9"; chr3 rmsk exon 104457868 104458473 876 - . gene_id "ERVLE_3q13.11c"; transcript_id "ERVLE_3q13.11c"; locus "ERVLE_3q13.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0799"; repClass "LTR"; repEnd "4925"; repFamily "ERVL"; repLeft "4080"; repStart "-742"; ### ERV316A3_3q13.11e ### chr3 rmsk gene 104622113 104623543 . + . gene_id "ERV316A3_3q13.11e"; transcript_id "ERV316A3_3q13.11e"; locus "ERV316A3_3q13.11e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0516"; model_cov "1455"; model_pct "27.8"; chr3 rmsk exon 104622113 104623543 3851 + . gene_id "ERV316A3_3q13.11e"; transcript_id "ERV316A3_3q13.11e"; locus "ERV316A3_3q13.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0516"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "-44"; repStart "3727"; ### ERV316A3_3q13.11f ### chr3 rmsk gene 104931932 104933129 . + . gene_id "ERV316A3_3q13.11f"; transcript_id "ERV316A3_3q13.11f"; locus "ERV316A3_3q13.11f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0517"; model_cov "1149"; model_pct "22.0"; chr3 rmsk exon 104931932 104933129 2047 + . gene_id "ERV316A3_3q13.11f"; transcript_id "ERV316A3_3q13.11f"; locus "ERV316A3_3q13.11f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0517"; repClass "LTR"; repEnd "4967"; repFamily "ERVL"; repLeft "-259"; repStart "3818"; ### ERV316A3_3q13.11g ### chr3 rmsk gene 105021255 105025285 . + . gene_id "ERV316A3_3q13.11g"; transcript_id "ERV316A3_3q13.11g"; locus "ERV316A3_3q13.11g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0518"; model_cov "1294"; model_pct "24.8"; chr3 rmsk exon 105021255 105021824 717 + . gene_id "ERV316A3_3q13.11g"; transcript_id "ERV316A3_3q13.11g"; locus "ERV316A3_3q13.11g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0518"; repClass "LTR"; repEnd "4226"; repFamily "ERVL"; repLeft "-1000"; repStart "3400"; chr3 rmsk exon 105024285 105024746 1247 + . gene_id "ERV316A3_3q13.11g"; transcript_id "ERV316A3_3q13.11g"; locus "ERV316A3_3q13.11g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0518"; repClass "LTR"; repEnd "4964"; repFamily "ERVL"; repLeft "-262"; repStart "4496"; chr3 rmsk exon 105025084 105025285 497 + . gene_id "ERV316A3_3q13.11g"; transcript_id "ERV316A3_3q13.11g"; locus "ERV316A3_3q13.11g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0518"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "224"; ### ERV316A3_3q13.11h ### chr3 rmsk gene 105201815 105204824 . + . gene_id "ERV316A3_3q13.11h"; transcript_id "ERV316A3_3q13.11h"; locus "ERV316A3_3q13.11h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0519"; model_cov "868"; model_pct "16.6"; chr3 rmsk exon 105201815 105202011 450 + . gene_id "ERV316A3_3q13.11h"; transcript_id "ERV316A3_3q13.11h"; locus "ERV316A3_3q13.11h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0519"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "-2104"; repStart "2927"; chr3 rmsk exon 105204171 105204322 430 + . gene_id "ERV316A3_3q13.11h"; transcript_id "ERV316A3_3q13.11h"; locus "ERV316A3_3q13.11h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0519"; repClass "LTR"; repEnd "3743"; repFamily "ERVL"; repLeft "-1483"; repStart "3588"; chr3 rmsk exon 105204321 105204824 645 + . gene_id "ERV316A3_3q13.11h"; transcript_id "ERV316A3_3q13.11h"; locus "ERV316A3_3q13.11h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0519"; repClass "LTR"; repEnd "4853"; repFamily "ERVL"; repLeft "-373"; repStart "4335"; ### ERVLB4_3q13.11b ### chr3 rmsk gene 105277481 105279418 . - . gene_id "ERVLB4_3q13.11b"; transcript_id "ERVLB4_3q13.11b"; locus "ERVLB4_3q13.11b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0354"; model_cov "995"; model_pct "17.4"; chr3 rmsk exon 105277481 105277534 894 - . gene_id "ERVLB4_3q13.11b"; transcript_id "ERVLB4_3q13.11b"; locus "ERVLB4_3q13.11b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0354"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "399"; repStart "0"; chr3 rmsk exon 105277659 105278138 1798 - . gene_id "ERVLB4_3q13.11b"; transcript_id "ERVLB4_3q13.11b"; locus "ERVLB4_3q13.11b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0354"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-91"; repStart "-66"; chr3 rmsk exon 105278143 105278271 4989 - . gene_id "ERVLB4_3q13.11b"; transcript_id "ERVLB4_3q13.11b"; locus "ERVLB4_3q13.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0354"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "5585"; repStart "-5"; chr3 rmsk exon 105278568 105279418 4989 - . gene_id "ERVLB4_3q13.11b"; transcript_id "ERVLB4_3q13.11b"; locus "ERVLB4_3q13.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0354"; repClass "LTR"; repEnd "5584"; repFamily "ERVL"; repLeft "4713"; repStart "-130"; ### HERVL_3q13.11d ### chr3 rmsk gene 105601061 105607582 . - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0286"; model_cov "4612"; model_pct "81.6"; chr3 rmsk exon 105601061 105601105 3222 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "395"; repStart "0"; chr3 rmsk exon 105601138 105601544 3222 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "1"; repStart "-50"; chr3 rmsk exon 105601545 105602115 4573 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5080"; repStart "0"; chr3 rmsk exon 105602105 105602833 5694 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "4898"; repFamily "ERVL"; repLeft "4171"; repStart "-756"; chr3 rmsk exon 105602833 105604435 25273 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "3313"; repFamily "ERVL"; repLeft "1725"; repStart "-2341"; chr3 rmsk exon 105604742 105606469 25273 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "1"; repStart "-3930"; chr3 rmsk exon 105606470 105606509 258 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr3 rmsk exon 105606545 105606565 258 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "385"; repStart "-40"; chr3 rmsk exon 105607166 105607582 2827 - . gene_id "HERVL_3q13.11d"; transcript_id "HERVL_3q13.11d"; locus "HERVL_3q13.11d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0286"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVLB4_3q13.11c ### chr3 rmsk gene 105626779 105629925 . - . gene_id "ERVLB4_3q13.11c"; transcript_id "ERVLB4_3q13.11c"; locus "ERVLB4_3q13.11c"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0355"; model_cov "1942"; model_pct "34.0"; chr3 rmsk exon 105626779 105628035 2789 - . gene_id "ERVLB4_3q13.11c"; transcript_id "ERVLB4_3q13.11c"; locus "ERVLB4_3q13.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0355"; repClass "LTR"; repEnd "3648"; repFamily "ERVL"; repLeft "2334"; repStart "-2066"; chr3 rmsk exon 105628513 105628835 2789 - . gene_id "ERVLB4_3q13.11c"; transcript_id "ERVLB4_3q13.11c"; locus "ERVLB4_3q13.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0355"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "2000"; repStart "-3381"; chr3 rmsk exon 105629262 105629591 1577 - . gene_id "ERVLB4_3q13.11c"; transcript_id "ERVLB4_3q13.11c"; locus "ERVLB4_3q13.11c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0355"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "10"; repStart "-48"; chr3 rmsk exon 105629636 105629925 765 - . gene_id "ERVLB4_3q13.11c"; transcript_id "ERVLB4_3q13.11c"; locus "ERVLB4_3q13.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0355"; repClass "LTR"; repEnd "1429"; repFamily "ERVL"; repLeft "1134"; repStart "-4285"; ### ERVLE_3q13.11d ### chr3 rmsk gene 106001398 106002375 . + . gene_id "ERVLE_3q13.11d"; transcript_id "ERVLE_3q13.11d"; locus "ERVLE_3q13.11d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0802"; model_cov "979"; model_pct "17.3"; chr3 rmsk exon 106001398 106001846 1228 + . gene_id "ERVLE_3q13.11d"; transcript_id "ERVLE_3q13.11d"; locus "ERVLE_3q13.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0802"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-4050"; repStart "1166"; chr3 rmsk exon 106001896 106002375 785 + . gene_id "ERVLE_3q13.11d"; transcript_id "ERVLE_3q13.11d"; locus "ERVLE_3q13.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0802"; repClass "LTR"; repEnd "4268"; repFamily "ERVL"; repLeft "-1399"; repStart "3740"; ### ERV316A3_3q13.11i ### chr3 rmsk gene 106009240 106010400 . + . gene_id "ERV316A3_3q13.11i"; transcript_id "ERV316A3_3q13.11i"; locus "ERV316A3_3q13.11i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0520"; model_cov "881"; model_pct "16.9"; chr3 rmsk exon 106009240 106009745 1209 + . gene_id "ERV316A3_3q13.11i"; transcript_id "ERV316A3_3q13.11i"; locus "ERV316A3_3q13.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0520"; repClass "LTR"; repEnd "2306"; repFamily "ERVL"; repLeft "-2920"; repStart "1791"; chr3 rmsk exon 106010061 106010400 1409 + . gene_id "ERV316A3_3q13.11i"; transcript_id "ERV316A3_3q13.11i"; locus "ERV316A3_3q13.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0520"; repClass "LTR"; repEnd "3045"; repFamily "ERVL"; repLeft "-2181"; repStart "2679"; ### MER61_3q13.11 ### chr3 rmsk gene 106255987 106261144 . + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0095"; model_cov "3875"; model_pct "74.3"; chr3 rmsk exon 106255987 106256329 1544 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0095"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr3 rmsk exon 106256347 106256829 1740 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-4745"; repStart "19"; chr3 rmsk exon 106256842 106256894 315 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "731"; chr3 rmsk exon 106256917 106256979 308 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "1480"; repFamily "ERV1"; repLeft "-3737"; repStart "1408"; chr3 rmsk exon 106257192 106257616 21290 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "1950"; repFamily "ERV1"; repLeft "-3267"; repStart "1475"; chr3 rmsk exon 106257657 106258843 21290 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "3147"; repFamily "ERV1"; repLeft "-2070"; repStart "1951"; chr3 rmsk exon 106259546 106261144 21290 + . gene_id "MER61_3q13.11"; transcript_id "MER61_3q13.11"; locus "MER61_3q13.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0095"; repClass "LTR"; repEnd "4781"; repFamily "ERV1"; repLeft "-436"; repStart "3148"; ### HERVL_3q13.11e ### chr3 rmsk gene 106358497 106360221 . + . gene_id "HERVL_3q13.11e"; transcript_id "HERVL_3q13.11e"; locus "HERVL_3q13.11e"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0287"; model_cov "1724"; model_pct "30.5"; chr3 rmsk exon 106358497 106360221 13413 + . gene_id "HERVL_3q13.11e"; transcript_id "HERVL_3q13.11e"; locus "HERVL_3q13.11e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0287"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "-1325"; repStart "2605"; ### ERV316A3_3q13.12a ### chr3 rmsk gene 106700659 106704034 . - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0522"; model_cov "2017"; model_pct "38.6"; chr3 rmsk exon 106700659 106701113 1123 - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0522"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr3 rmsk exon 106701216 106701312 286 - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0522"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "5031"; repStart "-96"; chr3 rmsk exon 106701437 106701687 686 - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0522"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "4598"; repStart "-377"; chr3 rmsk exon 106702099 106702176 322 - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0522"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "4473"; repStart "-674"; chr3 rmsk exon 106702437 106704034 3621 - . gene_id "ERV316A3_3q13.12a"; transcript_id "ERV316A3_3q13.12a"; locus "ERV316A3_3q13.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0522"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "2892"; repStart "-746"; ### HERVH_3q13.12a ### chr3 rmsk gene 106922769 106928372 . - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0273"; model_cov "4903"; model_pct "63.6"; chr3 rmsk exon 106922769 106923166 2782 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 106923167 106923535 2249 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 106923536 106923751 1366 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 106923753 106924412 4321 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 106924415 106924919 3399 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 106924910 106925059 913 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 106925057 106927980 20515 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "1"; repStart "-4729"; chr3 rmsk exon 106927983 106928372 2658 - . gene_id "HERVH_3q13.12a"; transcript_id "HERVH_3q13.12a"; locus "HERVH_3q13.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0273"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_3q13.12b ### chr3 rmsk gene 107004351 107004960 . + . gene_id "ERV316A3_3q13.12b"; transcript_id "ERV316A3_3q13.12b"; locus "ERV316A3_3q13.12b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0524"; model_cov "673"; model_pct "12.9"; chr3 rmsk exon 107004351 107004442 302 + . gene_id "ERV316A3_3q13.12b"; transcript_id "ERV316A3_3q13.12b"; locus "ERV316A3_3q13.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0524"; repClass "LTR"; repEnd "4717"; repFamily "ERVL"; repLeft "-509"; repStart "4628"; chr3 rmsk exon 107004537 107004960 1221 + . gene_id "ERV316A3_3q13.12b"; transcript_id "ERV316A3_3q13.12b"; locus "ERV316A3_3q13.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0524"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "4558"; ### MER4B_3q13.12 ### chr3 rmsk gene 107134186 107139313 . + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0094"; model_cov "3072"; model_pct "45.5"; chr3 rmsk exon 107134186 107134256 315 + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0094"; repClass "LTR"; repEnd "2714"; repFamily "ERV1"; repLeft "-4044"; repStart "2615"; chr3 rmsk exon 107134259 107134991 2371 + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0094"; repClass "LTR"; repEnd "3589"; repFamily "ERV1"; repLeft "-3169"; repStart "2609"; chr3 rmsk exon 107135925 107137099 6657 + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0094"; repClass "LTR"; repEnd "5275"; repFamily "ERV1"; repLeft "-1483"; repStart "4103"; chr3 rmsk exon 107137530 107137890 6657 + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0094"; repClass "LTR"; repEnd "5465"; repFamily "ERV1"; repLeft "-1293"; repStart "4879"; chr3 rmsk exon 107139021 107139313 828 + . gene_id "MER4B_3q13.12"; transcript_id "MER4B_3q13.12"; locus "MER4B_3q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0094"; repClass "LTR"; repEnd "6075"; repFamily "ERV1"; repLeft "-683"; repStart "5840"; ### ERV316A3_3q13.12c ### chr3 rmsk gene 107248969 107249989 . - . gene_id "ERV316A3_3q13.12c"; transcript_id "ERV316A3_3q13.12c"; locus "ERV316A3_3q13.12c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0525"; model_cov "617"; model_pct "11.8"; chr3 rmsk exon 107248969 107249273 1220 - . gene_id "ERV316A3_3q13.12c"; transcript_id "ERV316A3_3q13.12c"; locus "ERV316A3_3q13.12c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0525"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "17"; repStart "-151"; chr3 rmsk exon 107249343 107249989 1369 - . gene_id "ERV316A3_3q13.12c"; transcript_id "ERV316A3_3q13.12c"; locus "ERV316A3_3q13.12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0525"; repClass "LTR"; repEnd "1838"; repFamily "ERVL"; repLeft "1221"; repStart "-3388"; ### ERV316A3_3q13.12d ### chr3 rmsk gene 107273390 107275095 . + . gene_id "ERV316A3_3q13.12d"; transcript_id "ERV316A3_3q13.12d"; locus "ERV316A3_3q13.12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0526"; model_cov "646"; model_pct "12.4"; chr3 rmsk exon 107273390 107273890 1092 + . gene_id "ERV316A3_3q13.12d"; transcript_id "ERV316A3_3q13.12d"; locus "ERV316A3_3q13.12d"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0526"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "-4"; repStart "16"; chr3 rmsk exon 107274457 107275095 633 + . gene_id "ERV316A3_3q13.12d"; transcript_id "ERV316A3_3q13.12d"; locus "ERV316A3_3q13.12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0526"; repClass "LTR"; repEnd "1533"; repFamily "ERVL"; repLeft "-3693"; repStart "887"; ### ERV316A3_3q13.12e ### chr3 rmsk gene 107318233 107322352 . + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0527"; model_cov "1957"; model_pct "37.4"; chr3 rmsk exon 107318233 107318663 873 + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0527"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 107318866 107320055 2117 + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0527"; repClass "LTR"; repEnd "1710"; repFamily "ERVL"; repLeft "-3516"; repStart "538"; chr3 rmsk exon 107320153 107320710 1198 + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0527"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "-2285"; repStart "2391"; chr3 rmsk exon 107321445 107321664 766 + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0527"; repClass "LTR"; repEnd "3755"; repFamily "ERVL"; repLeft "-1471"; repStart "3520"; chr3 rmsk exon 107322032 107322352 674 + . gene_id "ERV316A3_3q13.12e"; transcript_id "ERV316A3_3q13.12e"; locus "ERV316A3_3q13.12e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0527"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-59"; repStart "93"; ### HERVH_3q13.12b ### chr3 rmsk gene 107569409 107571817 . - . gene_id "HERVH_3q13.12b"; transcript_id "HERVH_3q13.12b"; locus "HERVH_3q13.12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0274"; model_cov "2076"; model_pct "26.9"; chr3 rmsk exon 107569409 107569546 879 - . gene_id "HERVH_3q13.12b"; transcript_id "HERVH_3q13.12b"; locus "HERVH_3q13.12b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0274"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "276"; repStart "-38"; chr3 rmsk exon 107569547 107571203 9888 - . gene_id "HERVH_3q13.12b"; transcript_id "HERVH_3q13.12b"; locus "HERVH_3q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0274"; repClass "LTR"; repEnd "2418"; repFamily "ERV1"; repLeft "800"; repStart "-5295"; chr3 rmsk exon 107571262 107571710 1933 - . gene_id "HERVH_3q13.12b"; transcript_id "HERVH_3q13.12b"; locus "HERVH_3q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0274"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr3 rmsk exon 107571711 107571817 898 - . gene_id "HERVH_3q13.12b"; transcript_id "HERVH_3q13.12b"; locus "HERVH_3q13.12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0274"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### ERV316A3_3q13.12f ### chr3 rmsk gene 107960990 107964886 . - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0528"; model_cov "2482"; model_pct "47.5"; chr3 rmsk exon 107960990 107961264 1121 - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0528"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "2988"; repStart "-1967"; chr3 rmsk exon 107962236 107962714 2584 - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0528"; repClass "LTR"; repEnd "2357"; repFamily "ERVL"; repLeft "1861"; repStart "-2869"; chr3 rmsk exon 107962761 107963963 2584 - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0528"; repClass "LTR"; repEnd "1860"; repFamily "ERVL"; repLeft "591"; repStart "-3366"; chr3 rmsk exon 107964001 107964429 1150 - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0528"; repClass "LTR"; repEnd "752"; repFamily "ERVL"; repLeft "306"; repStart "-4474"; chr3 rmsk exon 107964484 107964886 1041 - . gene_id "ERV316A3_3q13.12f"; transcript_id "ERV316A3_3q13.12f"; locus "ERV316A3_3q13.12f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0528"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "1"; repStart "-3"; ### ERVLB4_3q13.13 ### chr3 rmsk gene 108208504 108209981 . + . gene_id "ERVLB4_3q13.13"; transcript_id "ERVLB4_3q13.13"; locus "ERVLB4_3q13.13"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0356"; model_cov "1030"; model_pct "18.0"; chr3 rmsk exon 108208504 108209483 5966 + . gene_id "ERVLB4_3q13.13"; transcript_id "ERVLB4_3q13.13"; locus "ERVLB4_3q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0356"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4684"; chr3 rmsk exon 108209486 108209981 1970 + . gene_id "ERVLB4_3q13.13"; transcript_id "ERVLB4_3q13.13"; locus "ERVLB4_3q13.13"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0356"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERV316A3_3q13.13a ### chr3 rmsk gene 108233323 108235718 . - . gene_id "ERV316A3_3q13.13a"; transcript_id "ERV316A3_3q13.13a"; locus "ERV316A3_3q13.13a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0529"; model_cov "2155"; model_pct "41.2"; chr3 rmsk exon 108233323 108233421 417 - . gene_id "ERV316A3_3q13.13a"; transcript_id "ERV316A3_3q13.13a"; locus "ERV316A3_3q13.13a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0529"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "364"; repStart "0"; chr3 rmsk exon 108233524 108234429 3512 - . gene_id "ERV316A3_3q13.13a"; transcript_id "ERV316A3_3q13.13a"; locus "ERV316A3_3q13.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0529"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "1985"; repStart "-2330"; chr3 rmsk exon 108234498 108235718 3641 - . gene_id "ERV316A3_3q13.13a"; transcript_id "ERV316A3_3q13.13a"; locus "ERV316A3_3q13.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0529"; repClass "LTR"; repEnd "1698"; repFamily "ERVL"; repLeft "454"; repStart "-3528"; ### MER101_3q13.13 ### chr3 rmsk gene 108243189 108250605 . + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0099"; model_cov "5642"; model_pct "85.0"; chr3 rmsk exon 108243189 108243871 2804 + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0099"; repClass "LTR"; repEnd "1884"; repFamily "ERV1"; repLeft "-4755"; repStart "1188"; chr3 rmsk exon 108246184 108247200 2804 + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0099"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "-2868"; repStart "1926"; chr3 rmsk exon 108247220 108249264 9328 + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0099"; repClass "LTR"; repEnd "5377"; repFamily "ERV1"; repLeft "-1262"; repStart "3302"; chr3 rmsk exon 108249274 108250259 5829 + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0099"; repClass "LTR"; repEnd "6582"; repFamily "ERV1"; repLeft "-57"; repStart "5556"; chr3 rmsk exon 108250282 108250605 1466 + . gene_id "MER101_3q13.13"; transcript_id "MER101_3q13.13"; locus "MER101_3q13.13"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0099"; repClass "LTR"; repEnd "370"; repFamily "ERV1"; repLeft "-104"; repStart "26"; ### ERV316A3_3q13.13b ### chr3 rmsk gene 108276289 108280984 . - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0531"; model_cov "1322"; model_pct "25.3"; chr3 rmsk exon 108276289 108276442 758 - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0531"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "2118"; repStart "-2952"; chr3 rmsk exon 108276747 108276913 758 - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0531"; repClass "LTR"; repEnd "2117"; repFamily "ERVL"; repLeft "1953"; repStart "-3109"; chr3 rmsk exon 108277164 108277299 524 - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0531"; repClass "LTR"; repEnd "1913"; repFamily "ERVL"; repLeft "1770"; repStart "-3313"; chr3 rmsk exon 108279652 108280520 1586 - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0531"; repClass "LTR"; repEnd "1095"; repFamily "ERVL"; repLeft "236"; repStart "-4131"; chr3 rmsk exon 108280528 108280984 1664 - . gene_id "ERV316A3_3q13.13b"; transcript_id "ERV316A3_3q13.13b"; locus "ERV316A3_3q13.13b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0531"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "18"; repStart "0"; ### ERVLE_3q13.13a ### chr3 rmsk gene 108334917 108336689 . + . gene_id "ERVLE_3q13.13a"; transcript_id "ERVLE_3q13.13a"; locus "ERVLE_3q13.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0803"; model_cov "776"; model_pct "13.7"; chr3 rmsk exon 108334917 108334989 387 + . gene_id "ERVLE_3q13.13a"; transcript_id "ERVLE_3q13.13a"; locus "ERVLE_3q13.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0803"; repClass "LTR"; repEnd "2435"; repFamily "ERVL"; repLeft "-3232"; repStart "2363"; chr3 rmsk exon 108335247 108335549 516 + . gene_id "ERVLE_3q13.13a"; transcript_id "ERVLE_3q13.13a"; locus "ERVLE_3q13.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0803"; repClass "LTR"; repEnd "3757"; repFamily "ERVL"; repLeft "-1910"; repStart "3426"; chr3 rmsk exon 108336337 108336689 578 + . gene_id "ERVLE_3q13.13a"; transcript_id "ERVLE_3q13.13a"; locus "ERVLE_3q13.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0803"; repClass "LTR"; repEnd "5024"; repFamily "ERVL"; repLeft "-643"; repStart "4651"; ### ERVLE_3q13.13b ### chr3 rmsk gene 108537244 108538368 . - . gene_id "ERVLE_3q13.13b"; transcript_id "ERVLE_3q13.13b"; locus "ERVLE_3q13.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0804"; model_cov "812"; model_pct "14.3"; chr3 rmsk exon 108537244 108537360 1437 - . gene_id "ERVLE_3q13.13b"; transcript_id "ERVLE_3q13.13b"; locus "ERVLE_3q13.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0804"; repClass "LTR"; repEnd "5553"; repFamily "ERVL"; repLeft "5432"; repStart "-114"; chr3 rmsk exon 108537725 108538368 1437 - . gene_id "ERVLE_3q13.13b"; transcript_id "ERVLE_3q13.13b"; locus "ERVLE_3q13.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0804"; repClass "LTR"; repEnd "5431"; repFamily "ERVL"; repLeft "4740"; repStart "-236"; ### ERV316A3_3q13.13c ### chr3 rmsk gene 108627707 108628561 . - . gene_id "ERV316A3_3q13.13c"; transcript_id "ERV316A3_3q13.13c"; locus "ERV316A3_3q13.13c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0532"; model_cov "581"; model_pct "11.1"; chr3 rmsk exon 108627707 108627885 392 - . gene_id "ERV316A3_3q13.13c"; transcript_id "ERV316A3_3q13.13c"; locus "ERV316A3_3q13.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0532"; repClass "LTR"; repEnd "918"; repFamily "ERVL"; repLeft "730"; repStart "-4308"; chr3 rmsk exon 108628177 108628561 392 - . gene_id "ERV316A3_3q13.13c"; transcript_id "ERV316A3_3q13.13c"; locus "ERV316A3_3q13.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0532"; repClass "LTR"; repEnd "729"; repFamily "ERVL"; repLeft "336"; repStart "-4497"; ### ERVLE_3q13.13c ### chr3 rmsk gene 108731337 108732817 . - . gene_id "ERVLE_3q13.13c"; transcript_id "ERVLE_3q13.13c"; locus "ERVLE_3q13.13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0806"; model_cov "1466"; model_pct "25.9"; chr3 rmsk exon 108731337 108732190 1445 - . gene_id "ERVLE_3q13.13c"; transcript_id "ERVLE_3q13.13c"; locus "ERVLE_3q13.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0806"; repClass "LTR"; repEnd "5271"; repFamily "ERVL"; repLeft "4372"; repStart "-396"; chr3 rmsk exon 108732210 108732531 1017 - . gene_id "ERVLE_3q13.13c"; transcript_id "ERVLE_3q13.13c"; locus "ERVLE_3q13.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0806"; repClass "LTR"; repEnd "4280"; repFamily "ERVL"; repLeft "3951"; repStart "-1387"; chr3 rmsk exon 108732608 108732817 592 - . gene_id "ERVLE_3q13.13c"; transcript_id "ERVLE_3q13.13c"; locus "ERVLE_3q13.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0806"; repClass "LTR"; repEnd "3769"; repFamily "ERVL"; repLeft "3531"; repStart "-1898"; ### HERVL_3q13.13a ### chr3 rmsk gene 109774515 109780949 . - . gene_id "HERVL_3q13.13a"; transcript_id "HERVL_3q13.13a"; locus "HERVL_3q13.13a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0288"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 109774515 109774935 2945 - . gene_id "HERVL_3q13.13a"; transcript_id "HERVL_3q13.13a"; locus "HERVL_3q13.13a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0288"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 109774936 109780540 30051 - . gene_id "HERVL_3q13.13a"; transcript_id "HERVL_3q13.13a"; locus "HERVL_3q13.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0288"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 109780543 109780582 669 - . gene_id "HERVL_3q13.13a"; transcript_id "HERVL_3q13.13a"; locus "HERVL_3q13.13a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0288"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "411"; repStart "-2"; chr3 rmsk exon 109780620 109780949 1823 - . gene_id "HERVL_3q13.13a"; transcript_id "HERVL_3q13.13a"; locus "HERVL_3q13.13a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0288"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-107"; repStart "-43"; ### HERVL_3q13.13b ### chr3 rmsk gene 110046523 110048734 . - . gene_id "HERVL_3q13.13b"; transcript_id "HERVL_3q13.13b"; locus "HERVL_3q13.13b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0289"; model_cov "1873"; model_pct "33.1"; chr3 rmsk exon 110046523 110048320 2080 - . gene_id "HERVL_3q13.13b"; transcript_id "HERVL_3q13.13b"; locus "HERVL_3q13.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0289"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "2788"; repStart "-1041"; chr3 rmsk exon 110048685 110048734 2080 - . gene_id "HERVL_3q13.13b"; transcript_id "HERVL_3q13.13b"; locus "HERVL_3q13.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0289"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "2739"; repStart "-2867"; ### ERV316A3_3q13.13d ### chr3 rmsk gene 110106308 110110375 . - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0534"; model_cov "1763"; model_pct "33.7"; chr3 rmsk exon 110106308 110106688 777 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr3 rmsk exon 110106718 110107881 3915 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "4055"; repStart "-28"; chr3 rmsk exon 110107866 110108202 534 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "1107"; repFamily "ERVL"; repLeft "757"; repStart "-4119"; chr3 rmsk exon 110108454 110108506 624 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "406"; repStart "-4753"; chr3 rmsk exon 110108883 110109056 624 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "226"; repStart "-4821"; chr3 rmsk exon 110109057 110109112 769 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "407"; repStart "-4"; chr3 rmsk exon 110109408 110109784 769 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "3"; repStart "-56"; chr3 rmsk exon 110109785 110109818 624 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "201"; repStart "-5001"; chr3 rmsk exon 110109970 110110375 1504 - . gene_id "ERV316A3_3q13.13d"; transcript_id "ERV316A3_3q13.13d"; locus "ERV316A3_3q13.13d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0534"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "39"; repStart "0"; ### ERVLE_3q13.13d ### chr3 rmsk gene 110173838 110175415 . - . gene_id "ERVLE_3q13.13d"; transcript_id "ERVLE_3q13.13d"; locus "ERVLE_3q13.13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0807"; model_cov "1547"; model_pct "27.3"; chr3 rmsk exon 110173838 110175111 1616 - . gene_id "ERVLE_3q13.13d"; transcript_id "ERVLE_3q13.13d"; locus "ERVLE_3q13.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0807"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "3981"; repStart "-393"; chr3 rmsk exon 110175186 110175415 439 - . gene_id "ERVLE_3q13.13d"; transcript_id "ERVLE_3q13.13d"; locus "ERVLE_3q13.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0807"; repClass "LTR"; repEnd "4192"; repFamily "ERVL"; repLeft "3938"; repStart "-1475"; ### ERVLE_3q13.13e ### chr3 rmsk gene 110209863 110210533 . + . gene_id "ERVLE_3q13.13e"; transcript_id "ERVLE_3q13.13e"; locus "ERVLE_3q13.13e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0808"; model_cov "707"; model_pct "12.5"; chr3 rmsk exon 110209863 110210533 2190 + . gene_id "ERVLE_3q13.13e"; transcript_id "ERVLE_3q13.13e"; locus "ERVLE_3q13.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0808"; repClass "LTR"; repEnd "4620"; repFamily "ERVL"; repLeft "-1047"; repStart "3913"; ### HERVL40_3q13.13a ### chr3 rmsk gene 110366959 110369801 . - . gene_id "HERVL40_3q13.13a"; transcript_id "HERVL40_3q13.13a"; locus "HERVL40_3q13.13a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0076"; model_cov "1214"; model_pct "22.0"; chr3 rmsk exon 110366959 110367052 1676 - . gene_id "HERVL40_3q13.13a"; transcript_id "HERVL40_3q13.13a"; locus "HERVL40_3q13.13a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0076"; repClass "LTR"; repEnd "1365"; repFamily "ERVL"; repLeft "1271"; repStart "-4165"; chr3 rmsk exon 110368049 110368744 1676 - . gene_id "HERVL40_3q13.13a"; transcript_id "HERVL40_3q13.13a"; locus "HERVL40_3q13.13a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0076"; repClass "LTR"; repEnd "1270"; repFamily "ERVL"; repLeft "564"; repStart "-4260"; chr3 rmsk exon 110368953 110369365 1166 - . gene_id "HERVL40_3q13.13a"; transcript_id "HERVL40_3q13.13a"; locus "HERVL40_3q13.13a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0076"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "1"; repStart "-5115"; chr3 rmsk exon 110369367 110369801 1250 - . gene_id "HERVL40_3q13.13a"; transcript_id "HERVL40_3q13.13a"; locus "HERVL40_3q13.13a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0076"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_3q13.13 ### chr3 rmsk gene 110393060 110398391 . - . gene_id "ERVL_3q13.13"; transcript_id "ERVL_3q13.13"; locus "ERVL_3q13.13"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0084"; model_cov "4105"; model_pct "71.3"; chr3 rmsk exon 110393060 110394879 9020 - . gene_id "ERVL_3q13.13"; transcript_id "ERVL_3q13.13"; locus "ERVL_3q13.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0084"; repClass "LTR"; repEnd "5435"; repFamily "ERVL"; repLeft "3550"; repStart "-322"; chr3 rmsk exon 110396285 110398391 8740 - . gene_id "ERVL_3q13.13"; transcript_id "ERVL_3q13.13"; locus "ERVL_3q13.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0084"; repClass "LTR"; repEnd "3248"; repFamily "ERVL"; repLeft "1028"; repStart "-2509"; ### ERV316A3_3q13.13e ### chr3 rmsk gene 110426931 110430529 . - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0535"; model_cov "2159"; model_pct "41.3"; chr3 rmsk exon 110426931 110427583 1621 - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0535"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "3199"; repStart "-1345"; chr3 rmsk exon 110427795 110427906 1329 - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0535"; repClass "LTR"; repEnd "2004"; repFamily "ERVL"; repLeft "1890"; repStart "-3222"; chr3 rmsk exon 110428088 110428990 1746 - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0535"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "913"; repStart "-3337"; chr3 rmsk exon 110429566 110429924 1193 - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0535"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "94"; repStart "-4745"; chr3 rmsk exon 110430058 110430529 1172 - . gene_id "ERV316A3_3q13.13e"; transcript_id "ERV316A3_3q13.13e"; locus "ERV316A3_3q13.13e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0535"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "1"; repStart "-5"; ### HERVL40_3q13.13b ### chr3 rmsk gene 110868380 110870700 . + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0077"; model_cov "1886"; model_pct "34.1"; chr3 rmsk exon 110868380 110868846 871 + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0077"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "109"; chr3 rmsk exon 110868889 110869564 1955 + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0077"; repClass "LTR"; repEnd "1257"; repFamily "ERVL"; repLeft "-4273"; repStart "566"; chr3 rmsk exon 110869734 110869824 280 + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0077"; repClass "LTR"; repEnd "1755"; repFamily "ERVL"; repLeft "-3775"; repStart "1662"; chr3 rmsk exon 110870015 110870636 1884 + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0077"; repClass "LTR"; repEnd "2610"; repFamily "ERVL"; repLeft "-2920"; repStart "1969"; chr3 rmsk exon 110870637 110870700 269 + . gene_id "HERVL40_3q13.13b"; transcript_id "HERVL40_3q13.13b"; locus "HERVL40_3q13.13b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0077"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "385"; ### ERVLE_3q13.13f ### chr3 rmsk gene 111161253 111162136 . - . gene_id "ERVLE_3q13.13f"; transcript_id "ERVLE_3q13.13f"; locus "ERVLE_3q13.13f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0809"; model_cov "604"; model_pct "10.7"; chr3 rmsk exon 111161253 111161455 1945 - . gene_id "ERVLE_3q13.13f"; transcript_id "ERVLE_3q13.13f"; locus "ERVLE_3q13.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0809"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "1245"; repStart "-4199"; chr3 rmsk exon 111161767 111162136 1945 - . gene_id "ERVLE_3q13.13f"; transcript_id "ERVLE_3q13.13f"; locus "ERVLE_3q13.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0809"; repClass "LTR"; repEnd "1244"; repFamily "ERVL"; repLeft "863"; repStart "-4423"; ### MER41_3q13.13 ### chr3 rmsk gene 111345961 111351213 . - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0094"; model_cov "6212"; model_pct "100.0"; chr3 rmsk exon 111345961 111346465 3392 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0094"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "3"; repStart "-124"; chr3 rmsk exon 111346468 111348638 11869 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "2027"; repStart "0"; chr3 rmsk exon 111348622 111348664 268 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "2423"; repFamily "ERV1"; repLeft "2381"; repStart "-3523"; chr3 rmsk exon 111348652 111349428 4427 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "2167"; repStart "-3000"; chr3 rmsk exon 111349428 111349941 3547 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1375"; repStart "-3932"; chr3 rmsk exon 111350250 111350474 3547 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "1374"; repFamily "ERV1"; repLeft "1142"; repStart "-4572"; chr3 rmsk exon 111350472 111351057 3969 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0094"; repClass "LTR"; repEnd "603"; repFamily "ERV1"; repLeft "2"; repStart "-5343"; chr3 rmsk exon 111351059 111351213 1000 - . gene_id "MER41_3q13.13"; transcript_id "MER41_3q13.13"; locus "MER41_3q13.13"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0094"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "479"; repStart "0"; ### HERVK11_3q13.13 ### chr3 rmsk gene 111524145 111530464 . + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0020"; model_cov "4281"; model_pct "53.8"; chr3 rmsk exon 111524145 111525159 4696 + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0020"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 111525160 111525468 2084 + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0020"; repClass "LTR"; repEnd "308"; repFamily "ERVK"; repLeft "-7645"; repStart "1"; chr3 rmsk exon 111525472 111526766 9774 + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0020"; repClass "LTR"; repEnd "3534"; repFamily "ERVK"; repLeft "-4419"; repStart "2257"; chr3 rmsk exon 111526757 111529449 21099 + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0020"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5256"; chr3 rmsk exon 111529451 111530464 4933 + . gene_id "HERVK11_3q13.13"; transcript_id "HERVK11_3q13.13"; locus "HERVK11_3q13.13"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0020"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HERV3_3q13.2 ### chr3 rmsk gene 112301858 112308531 . + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0010"; model_cov "6315"; model_pct "74.9"; chr3 rmsk exon 112301858 112302478 4198 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 112302479 112303209 2529 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "345"; repFamily "ERV1"; repLeft "-8081"; repStart "-374"; chr3 rmsk exon 112303246 112303973 2489 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "-7039"; repStart "675"; chr3 rmsk exon 112303964 112305197 3272 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "4082"; repFamily "ERV1"; repLeft "-4344"; repStart "1704"; chr3 rmsk exon 112305239 112307741 12978 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "6746"; repFamily "ERV1"; repLeft "-1680"; repStart "4240"; chr3 rmsk exon 112307908 112308531 4107 + . gene_id "HERV3_3q13.2"; transcript_id "HERV3_3q13.2"; locus "HERV3_3q13.2"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0010"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_3q13.2a ### chr3 rmsk gene 112399414 112406136 . - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0154"; model_cov "4434"; model_pct "67.2"; chr3 rmsk exon 112399414 112399750 3305 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0154"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "140"; repStart "0"; chr3 rmsk exon 112400199 112400338 3305 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0154"; repClass "LTR"; repEnd "139"; repFamily "ERV1"; repLeft "1"; repStart "-333"; chr3 rmsk exon 112400343 112400426 14163 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6492"; repStart "0"; chr3 rmsk exon 112400861 112401538 14163 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "6491"; repFamily "ERV1"; repLeft "5798"; repStart "-107"; chr3 rmsk exon 112401862 112403555 14163 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "5797"; repFamily "ERV1"; repLeft "4022"; repStart "-801"; chr3 rmsk exon 112403796 112403893 357 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "3912"; repStart "-2593"; chr3 rmsk exon 112403940 112404323 1855 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "2844"; repStart "-3321"; chr3 rmsk exon 112404524 112405151 3446 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1833"; repStart "-4103"; chr3 rmsk exon 112405424 112405513 3446 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "1832"; repFamily "ERV1"; repLeft "1756"; repStart "-4766"; chr3 rmsk exon 112405576 112406136 3033 - . gene_id "MER4_3q13.2a"; transcript_id "MER4_3q13.2a"; locus "MER4_3q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0154"; repClass "LTR"; repEnd "988"; repFamily "ERV1"; repLeft "392"; repStart "-5610"; ### HERVH_3q13.2 ### chr3 rmsk gene 112418412 112423365 . - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0275"; model_cov "4032"; model_pct "52.3"; chr3 rmsk exon 112418412 112418862 3473 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 112418863 112419028 1055 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7551"; repStart "0"; chr3 rmsk exon 112419020 112419250 1456 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "4713"; repFamily "ERV1"; repLeft "4488"; repStart "-3000"; chr3 rmsk exon 112419253 112419755 3207 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 112419746 112419895 928 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 112419875 112422911 19769 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 112422914 112423365 3504 - . gene_id "HERVH_3q13.2"; transcript_id "HERVH_3q13.2"; locus "HERVH_3q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0275"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_3q13.2b ### chr3 rmsk gene 112510562 112514942 . - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0155"; model_cov "3727"; model_pct "56.5"; chr3 rmsk exon 112510562 112511781 7528 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "5086"; repFamily "ERV1"; repLeft "3841"; repStart "-1512"; chr3 rmsk exon 112511753 112512037 3894 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "3445"; repStart "-2919"; chr3 rmsk exon 112512332 112512996 3894 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "2737"; repStart "-3154"; chr3 rmsk exon 112513237 112513738 4067 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1957"; repStart "-4103"; chr3 rmsk exon 112514040 112514232 4067 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "1956"; repFamily "ERV1"; repLeft "1764"; repStart "-4642"; chr3 rmsk exon 112514217 112514505 1368 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "1015"; repFamily "ERV1"; repLeft "624"; repStart "-5583"; chr3 rmsk exon 112514518 112514942 2651 - . gene_id "MER4_3q13.2b"; transcript_id "MER4_3q13.2b"; locus "MER4_3q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0155"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "267"; repStart "-5911"; ### PRIMA41_3q13.2 ### chr3 rmsk gene 112644325 112645719 . - . gene_id "PRIMA41_3q13.2"; transcript_id "PRIMA41_3q13.2"; locus "PRIMA41_3q13.2"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0035"; model_cov "828"; model_pct "10.7"; chr3 rmsk exon 112644325 112644422 600 - . gene_id "PRIMA41_3q13.2"; transcript_id "PRIMA41_3q13.2"; locus "PRIMA41_3q13.2"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0035"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "496"; repStart "0"; chr3 rmsk exon 112644543 112644674 289 - . gene_id "PRIMA41_3q13.2"; transcript_id "PRIMA41_3q13.2"; locus "PRIMA41_3q13.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0035"; repClass "LTR"; repEnd "4973"; repFamily "ERV1"; repLeft "4841"; repStart "-2783"; chr3 rmsk exon 112644733 112645187 656 - . gene_id "PRIMA41_3q13.2"; transcript_id "PRIMA41_3q13.2"; locus "PRIMA41_3q13.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0035"; repClass "LTR"; repEnd "3798"; repFamily "ERV1"; repLeft "3102"; repStart "-3958"; chr3 rmsk exon 112645590 112645719 770 - . gene_id "PRIMA41_3q13.2"; transcript_id "PRIMA41_3q13.2"; locus "PRIMA41_3q13.2"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0035"; repClass "LTR"; repEnd "132"; repFamily "ERV1"; repLeft "1"; repStart "-463"; ### HERVL_3q13.2 ### chr3 rmsk gene 112694118 112700907 . + . gene_id "HERVL_3q13.2"; transcript_id "HERVL_3q13.2"; locus "HERVL_3q13.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0290"; model_cov "4270"; model_pct "75.5"; chr3 rmsk exon 112694118 112695398 9640 + . gene_id "HERVL_3q13.2"; transcript_id "HERVL_3q13.2"; locus "HERVL_3q13.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0290"; repClass "LTR"; repEnd "2679"; repFamily "ERVL"; repLeft "-2975"; repStart "1396"; chr3 rmsk exon 112697699 112700649 22376 + . gene_id "HERVL_3q13.2"; transcript_id "HERVL_3q13.2"; locus "HERVL_3q13.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0290"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2667"; chr3 rmsk exon 112700650 112700907 1740 + . gene_id "HERVL_3q13.2"; transcript_id "HERVL_3q13.2"; locus "HERVL_3q13.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0290"; repClass "LTR"; repEnd "264"; repFamily "ERVL"; repLeft "-180"; repStart "1"; ### ERV316A3_3q13.2a ### chr3 rmsk gene 112832088 112834559 . + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0538"; model_cov "2136"; model_pct "40.9"; chr3 rmsk exon 112832088 112832992 2245 + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0538"; repClass "LTR"; repEnd "2652"; repFamily "ERVL"; repLeft "-2574"; repStart "1708"; chr3 rmsk exon 112833039 112833892 2245 + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0538"; repClass "LTR"; repEnd "3546"; repFamily "ERVL"; repLeft "-1680"; repStart "2653"; chr3 rmsk exon 112833931 112834039 440 + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0538"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "-1486"; repStart "3631"; chr3 rmsk exon 112834332 112834460 332 + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0538"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "-809"; repStart "4288"; chr3 rmsk exon 112834498 112834559 268 + . gene_id "ERV316A3_3q13.2a"; transcript_id "ERV316A3_3q13.2a"; locus "ERV316A3_3q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0538"; repClass "LTR"; repEnd "4782"; repFamily "ERVL"; repLeft "-444"; repStart "4721"; ### ERVLE_3q13.2a ### chr3 rmsk gene 112839154 112840697 . + . gene_id "ERVLE_3q13.2a"; transcript_id "ERVLE_3q13.2a"; locus "ERVLE_3q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0811"; model_cov "1136"; model_pct "20.0"; chr3 rmsk exon 112839154 112840191 3239 + . gene_id "ERVLE_3q13.2a"; transcript_id "ERVLE_3q13.2a"; locus "ERVLE_3q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0811"; repClass "LTR"; repEnd "1056"; repFamily "ERVL"; repLeft "-4611"; repStart "5"; chr3 rmsk exon 112840612 112840697 3239 + . gene_id "ERVLE_3q13.2a"; transcript_id "ERVLE_3q13.2a"; locus "ERVLE_3q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0811"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "-4525"; repStart "1057"; ### HERVL74_3q13.2a ### chr3 rmsk gene 112846935 112848685 . - . gene_id "HERVL74_3q13.2a"; transcript_id "HERVL74_3q13.2a"; locus "HERVL74_3q13.2a"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0015"; model_cov "1392"; model_pct "24.5"; chr3 rmsk exon 112846935 112847377 2131 - . gene_id "HERVL74_3q13.2a"; transcript_id "HERVL74_3q13.2a"; locus "HERVL74_3q13.2a"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0015"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "9"; repStart "0"; chr3 rmsk exon 112847389 112848685 2944 - . gene_id "HERVL74_3q13.2a"; transcript_id "HERVL74_3q13.2a"; locus "HERVL74_3q13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0015"; repClass "LTR"; repEnd "5685"; repFamily "ERVL"; repLeft "4293"; repStart "0"; ### HERVL74_3q13.2b ### chr3 rmsk gene 112855652 112856844 . - . gene_id "HERVL74_3q13.2b"; transcript_id "HERVL74_3q13.2b"; locus "HERVL74_3q13.2b"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0016"; model_cov "1090"; model_pct "19.2"; chr3 rmsk exon 112855652 112856706 4897 - . gene_id "HERVL74_3q13.2b"; transcript_id "HERVL74_3q13.2b"; locus "HERVL74_3q13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0016"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "3215"; repStart "-1380"; chr3 rmsk exon 112856709 112856844 562 - . gene_id "HERVL74_3q13.2b"; transcript_id "HERVL74_3q13.2b"; locus "HERVL74_3q13.2b"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0016"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "1"; repStart "-325"; ### HML2_3q13.2 ### chr3 rmsk gene 113024277 113033435 . - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0024"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 113024277 113025236 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 113025332 113026948 14772 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr3 rmsk exon 113026948 113032475 50828 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr3 rmsk exon 113032476 113033435 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_3q13.2b ### chr3 rmsk gene 113036547 113037824 . + . gene_id "ERVLE_3q13.2b"; transcript_id "ERVLE_3q13.2b"; locus "ERVLE_3q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0812"; model_cov "1247"; model_pct "22.0"; chr3 rmsk exon 113036547 113036807 395 + . gene_id "ERVLE_3q13.2b"; transcript_id "ERVLE_3q13.2b"; locus "ERVLE_3q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0812"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-5160"; repStart "192"; chr3 rmsk exon 113036892 113037824 2446 + . gene_id "ERVLE_3q13.2b"; transcript_id "ERVLE_3q13.2b"; locus "ERVLE_3q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0812"; repClass "LTR"; repEnd "2119"; repFamily "ERVL"; repLeft "-3548"; repStart "1187"; ### ERVLE_3q13.2c ### chr3 rmsk gene 113076676 113077279 . + . gene_id "ERVLE_3q13.2c"; transcript_id "ERVLE_3q13.2c"; locus "ERVLE_3q13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0814"; model_cov "670"; model_pct "11.8"; chr3 rmsk exon 113076676 113077279 1515 + . gene_id "ERVLE_3q13.2c"; transcript_id "ERVLE_3q13.2c"; locus "ERVLE_3q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0814"; repClass "LTR"; repEnd "1811"; repFamily "ERVL"; repLeft "-3856"; repStart "1141"; ### ERV316A3_3q13.2b ### chr3 rmsk gene 113185093 113187839 . + . gene_id "ERV316A3_3q13.2b"; transcript_id "ERV316A3_3q13.2b"; locus "ERV316A3_3q13.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0539"; model_cov "2388"; model_pct "45.7"; chr3 rmsk exon 113185093 113185496 1517 + . gene_id "ERV316A3_3q13.2b"; transcript_id "ERV316A3_3q13.2b"; locus "ERV316A3_3q13.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0539"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 113185498 113186624 3227 + . gene_id "ERV316A3_3q13.2b"; transcript_id "ERV316A3_3q13.2b"; locus "ERV316A3_3q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0539"; repClass "LTR"; repEnd "1192"; repFamily "ERVL"; repLeft "-4034"; repStart "7"; chr3 rmsk exon 113186680 113187839 3652 + . gene_id "ERV316A3_3q13.2b"; transcript_id "ERV316A3_3q13.2b"; locus "ERV316A3_3q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0539"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "-2726"; repStart "1297"; ### HUERSP2_3q13.2 ### chr3 rmsk gene 113338561 113341339 . - . gene_id "HUERSP2_3q13.2"; transcript_id "HUERSP2_3q13.2"; locus "HUERSP2_3q13.2"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0030"; model_cov "1976"; model_pct "64.0"; chr3 rmsk exon 113338561 113340377 10234 - . gene_id "HUERSP2_3q13.2"; transcript_id "HUERSP2_3q13.2"; locus "HUERSP2_3q13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0030"; repClass "LTR"; repEnd "2110"; repFamily "ERV1"; repLeft "213"; repStart "-978"; chr3 rmsk exon 113340404 113340485 383 - . gene_id "HUERSP2_3q13.2"; transcript_id "HUERSP2_3q13.2"; locus "HUERSP2_3q13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0030"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "48"; repStart "-2961"; chr3 rmsk exon 113340525 113341339 5432 - . gene_id "HUERSP2_3q13.2"; transcript_id "HUERSP2_3q13.2"; locus "HUERSP2_3q13.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0030"; repClass "LTR"; repEnd "835"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_3q13.31 ### chr3 rmsk gene 113998492 114000558 . + . gene_id "ERVLB4_3q13.31"; transcript_id "ERVLB4_3q13.31"; locus "ERVLB4_3q13.31"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0358"; model_cov "1627"; model_pct "28.5"; chr3 rmsk exon 113998492 114000000 9313 + . gene_id "ERVLB4_3q13.31"; transcript_id "ERVLB4_3q13.31"; locus "ERVLB4_3q13.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0358"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "-70"; repStart "4086"; chr3 rmsk exon 114000001 114000070 497 + . gene_id "ERVLB4_3q13.31"; transcript_id "ERVLB4_3q13.31"; locus "ERVLB4_3q13.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0358"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5645"; chr3 rmsk exon 114000071 114000558 2386 + . gene_id "ERVLB4_3q13.31"; transcript_id "ERVLB4_3q13.31"; locus "ERVLB4_3q13.31"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0358"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_3q13.31a ### chr3 rmsk gene 114113384 114117765 . + . gene_id "ERV316A3_3q13.31a"; transcript_id "ERV316A3_3q13.31a"; locus "ERV316A3_3q13.31a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0540"; model_cov "2374"; model_pct "45.4"; chr3 rmsk exon 114113384 114113817 1150 + . gene_id "ERV316A3_3q13.31a"; transcript_id "ERV316A3_3q13.31a"; locus "ERV316A3_3q13.31a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0540"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 114113820 114115718 4562 + . gene_id "ERV316A3_3q13.31a"; transcript_id "ERV316A3_3q13.31a"; locus "ERV316A3_3q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0540"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "-1449"; repStart "1851"; chr3 rmsk exon 114116020 114116314 4562 + . gene_id "ERV316A3_3q13.31a"; transcript_id "ERV316A3_3q13.31a"; locus "ERV316A3_3q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0540"; repClass "LTR"; repEnd "4101"; repFamily "ERVL"; repLeft "-1125"; repStart "3778"; chr3 rmsk exon 114117654 114117765 285 + . gene_id "ERV316A3_3q13.31a"; transcript_id "ERV316A3_3q13.31a"; locus "ERV316A3_3q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0540"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "-756"; repStart "4345"; ### MER41_3q13.31a ### chr3 rmsk gene 114258979 114262967 . - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0095"; model_cov "5483"; model_pct "92.2"; chr3 rmsk exon 114258979 114259013 263 - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0095"; repClass "LTR"; repEnd "-45"; repFamily "ERV1"; repLeft "-79"; repStart "-599"; chr3 rmsk exon 114259014 114261887 11959 - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0095"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "1092"; repStart "-2"; chr3 rmsk exon 114261924 114262522 3970 - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0095"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "1"; repStart "-5314"; chr3 rmsk exon 114262523 114262642 958 - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0095"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "435"; repStart "0"; chr3 rmsk exon 114262943 114262967 958 - . gene_id "MER41_3q13.31a"; transcript_id "MER41_3q13.31a"; locus "MER41_3q13.31a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0095"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "401"; repStart "-120"; ### MER4_3q13.31 ### chr3 rmsk gene 115185448 115192571 . + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0157"; model_cov "6292"; model_pct "95.4"; chr3 rmsk exon 115185448 115185712 3182 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0157"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "207"; chr3 rmsk exon 115185715 115186286 2424 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr3 rmsk exon 115186277 115186394 355 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-719"; chr3 rmsk exon 115186447 115186809 1498 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "2492"; repFamily "ERV1"; repLeft "-4106"; repStart "2112"; chr3 rmsk exon 115186826 115187654 6693 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "3212"; repFamily "ERV1"; repLeft "-3386"; repStart "1782"; chr3 rmsk exon 115188385 115189286 3904 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "2737"; chr3 rmsk exon 115189285 115192097 15029 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0157"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "3815"; chr3 rmsk exon 115192109 115192571 2904 + . gene_id "MER4_3q13.31"; transcript_id "MER4_3q13.31"; locus "MER4_3q13.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0157"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_3q13.31b ### chr3 rmsk gene 115432539 115438659 . + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0541"; model_cov "4523"; model_pct "86.5"; chr3 rmsk exon 115432539 115432967 1067 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "-11"; repStart "2"; chr3 rmsk exon 115432989 115433154 457 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-4819"; repStart "231"; chr3 rmsk exon 115433278 115434102 2468 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "-3977"; repStart "410"; chr3 rmsk exon 115434465 115435254 2468 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "-3525"; repStart "762"; chr3 rmsk exon 115435324 115436014 1297 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "2919"; repFamily "ERVL"; repLeft "-2307"; repStart "2193"; chr3 rmsk exon 115436019 115436284 376 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "3077"; repFamily "ERVL"; repLeft "-2149"; repStart "2800"; chr3 rmsk exon 115436617 115438163 3240 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "3610"; chr3 rmsk exon 115438232 115438659 1205 + . gene_id "ERV316A3_3q13.31b"; transcript_id "ERV316A3_3q13.31b"; locus "ERV316A3_3q13.31b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0541"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "-51"; ### HERVW_3q13.31 ### chr3 rmsk gene 115744575 115746918 . + . gene_id "HERVW_3q13.31"; transcript_id "HERVW_3q13.31"; locus "HERVW_3q13.31"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0068"; model_cov "2445"; model_pct "28.3"; chr3 rmsk exon 115744575 115745993 10641 + . gene_id "HERVW_3q13.31"; transcript_id "HERVW_3q13.31"; locus "HERVW_3q13.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0068"; repClass "LTR"; repEnd "4577"; repFamily "ERV1"; repLeft "-4049"; repStart "3162"; chr3 rmsk exon 115745988 115746444 2336 + . gene_id "HERVW_3q13.31"; transcript_id "HERVW_3q13.31"; locus "HERVW_3q13.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0068"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "6809"; chr3 rmsk exon 115746435 115746726 2322 + . gene_id "HERVW_3q13.31"; transcript_id "HERVW_3q13.31"; locus "HERVW_3q13.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0068"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 115746727 115746918 1212 + . gene_id "HERVW_3q13.31"; transcript_id "HERVW_3q13.31"; locus "HERVW_3q13.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0068"; repClass "LTR"; repEnd "192"; repFamily "ERV1"; repLeft "-588"; repStart "1"; ### HERVH_3q13.31a ### chr3 rmsk gene 115793483 115799166 . - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0276"; model_cov "4908"; model_pct "63.6"; chr3 rmsk exon 115793483 115793932 3689 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 115793933 115794312 2615 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 115794311 115794527 1485 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 115794529 115795190 4276 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 115795193 115795688 3446 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr3 rmsk exon 115795688 115795834 890 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 115795814 115798714 16580 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 115798717 115799166 3575 - . gene_id "HERVH_3q13.31a"; transcript_id "HERVH_3q13.31a"; locus "HERVH_3q13.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0276"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q13.31b ### chr3 rmsk gene 116105357 116111228 . - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0277"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 116105357 116105790 2680 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 116105791 116106173 2532 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 116106172 116106394 1331 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 116106392 116107010 2963 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 116107013 116107514 3324 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 116107505 116107652 794 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 116107647 116110798 17561 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 116110799 116111228 2540 - . gene_id "HERVH_3q13.31b"; transcript_id "HERVH_3q13.31b"; locus "HERVH_3q13.31b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0277"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3q13.31 ### chr3 rmsk gene 116572122 116578479 . + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0291"; model_cov "5286"; model_pct "93.5"; chr3 rmsk exon 116572122 116572518 2678 + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0291"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr3 rmsk exon 116572714 116574279 12326 + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0291"; repClass "LTR"; repEnd "1566"; repFamily "ERVL"; repLeft "-4088"; repStart "1"; chr3 rmsk exon 116574317 116577405 27719 + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0291"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-625"; repStart "1932"; chr3 rmsk exon 116577442 116578062 27719 + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0291"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5030"; chr3 rmsk exon 116578063 116578479 2728 + . gene_id "HERVL_3q13.31"; transcript_id "HERVL_3q13.31"; locus "HERVL_3q13.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0291"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_3q13.31c ### chr3 rmsk gene 116991586 116996187 . + . gene_id "ERV316A3_3q13.31c"; transcript_id "ERV316A3_3q13.31c"; locus "ERV316A3_3q13.31c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0542"; model_cov "3857"; model_pct "73.8"; chr3 rmsk exon 116991586 116992004 1013 + . gene_id "ERV316A3_3q13.31c"; transcript_id "ERV316A3_3q13.31c"; locus "ERV316A3_3q13.31c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0542"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "4"; chr3 rmsk exon 116992163 116993838 2787 + . gene_id "ERV316A3_3q13.31c"; transcript_id "ERV316A3_3q13.31c"; locus "ERV316A3_3q13.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0542"; repClass "LTR"; repEnd "1940"; repFamily "ERVL"; repLeft "-3286"; repStart "191"; chr3 rmsk exon 116993864 116995951 5301 + . gene_id "ERV316A3_3q13.31c"; transcript_id "ERV316A3_3q13.31c"; locus "ERV316A3_3q13.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0542"; repClass "LTR"; repEnd "4098"; repFamily "ERVL"; repLeft "-1128"; repStart "1990"; chr3 rmsk exon 116995954 116996187 563 + . gene_id "ERV316A3_3q13.31c"; transcript_id "ERV316A3_3q13.31c"; locus "ERV316A3_3q13.31c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0542"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "189"; ### MER41_3q13.31b ### chr3 rmsk gene 117025484 117034293 . + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0096"; model_cov "5998"; model_pct "100.0"; chr3 rmsk exon 117025484 117025859 4137 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0096"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "-166"; repStart "1"; chr3 rmsk exon 117026165 117026338 4137 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0096"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "389"; chr3 rmsk exon 117026423 117026475 265 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0096"; repClass "LTR"; repEnd "-1754"; repFamily "ERV1"; repLeft "-7700"; repStart "-1809"; chr3 rmsk exon 117027736 117033411 21728 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0096"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 117033412 117033450 4129 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0096"; repClass "LTR"; repEnd "36"; repFamily "ERV1"; repLeft "-518"; repStart "1"; chr3 rmsk exon 117033766 117034293 4129 + . gene_id "MER41_3q13.31b"; transcript_id "MER41_3q13.31b"; locus "MER41_3q13.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0096"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "37"; ### ERV316A3_3q13.32 ### chr3 rmsk gene 118297050 118298465 . + . gene_id "ERV316A3_3q13.32"; transcript_id "ERV316A3_3q13.32"; locus "ERV316A3_3q13.32"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0543"; model_cov "963"; model_pct "18.4"; chr3 rmsk exon 118297050 118297885 1389 + . gene_id "ERV316A3_3q13.32"; transcript_id "ERV316A3_3q13.32"; locus "ERV316A3_3q13.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0543"; repClass "LTR"; repEnd "4562"; repFamily "ERVL"; repLeft "-664"; repStart "3739"; chr3 rmsk exon 118298114 118298253 507 + . gene_id "ERV316A3_3q13.32"; transcript_id "ERV316A3_3q13.32"; locus "ERV316A3_3q13.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0543"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "-519"; repStart "4567"; chr3 rmsk exon 118298325 118298465 453 + . gene_id "ERV316A3_3q13.32"; transcript_id "ERV316A3_3q13.32"; locus "ERV316A3_3q13.32"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0543"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "287"; ### HERVL_3q13.32 ### chr3 rmsk gene 118358463 118364569 . - . gene_id "HERVL_3q13.32"; transcript_id "HERVL_3q13.32"; locus "HERVL_3q13.32"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0293"; model_cov "5618"; model_pct "99.4"; chr3 rmsk exon 118358463 118364058 41881 - . gene_id "HERVL_3q13.32"; transcript_id "HERVL_3q13.32"; locus "HERVL_3q13.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0293"; repClass "LTR"; repEnd "5619"; repFamily "ERVL"; repLeft "1"; repStart "-35"; chr3 rmsk exon 118364059 118364135 255 - . gene_id "HERVL_3q13.32"; transcript_id "HERVL_3q13.32"; locus "HERVL_3q13.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0293"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "368"; repStart "0"; chr3 rmsk exon 118364157 118364569 2956 - . gene_id "HERVL_3q13.32"; transcript_id "HERVL_3q13.32"; locus "HERVL_3q13.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0293"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "1"; repStart "-31"; ### MER41_3q13.32 ### chr3 rmsk gene 118589641 118594970 . + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0097"; model_cov "5140"; model_pct "86.4"; chr3 rmsk exon 118589641 118590192 4043 + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0097"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 118590279 118590893 3516 + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0097"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-5328"; repStart "1"; chr3 rmsk exon 118590882 118592461 11814 + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0097"; repClass "LTR"; repEnd "4267"; repFamily "ERV1"; repLeft "-1679"; repStart "1420"; chr3 rmsk exon 118592757 118594417 11814 + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0097"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4268"; chr3 rmsk exon 118594418 118594970 4201 + . gene_id "MER41_3q13.32"; transcript_id "MER41_3q13.32"; locus "MER41_3q13.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0097"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERVLE_3q13.32 ### chr3 rmsk gene 118735081 118739848 . - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0816"; model_cov "3605"; model_pct "63.6"; chr3 rmsk exon 118735081 118735389 541 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5349"; repStart "-1"; chr3 rmsk exon 118735407 118735883 1071 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4786"; repStart "-373"; chr3 rmsk exon 118735992 118736762 2830 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "4512"; repFamily "ERVL"; repLeft "3742"; repStart "-1155"; chr3 rmsk exon 118736796 118737229 1376 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "3681"; repFamily "ERVL"; repLeft "3231"; repStart "-1986"; chr3 rmsk exon 118737358 118737695 869 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "3069"; repFamily "ERVL"; repLeft "2701"; repStart "-2598"; chr3 rmsk exon 118737815 118738698 1722 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "924"; repStart "-3834"; chr3 rmsk exon 118739567 118739848 581 - . gene_id "ERVLE_3q13.32"; transcript_id "ERVLE_3q13.32"; locus "ERVLE_3q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0816"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "19"; repStart "-5365"; ### HERVL18_3q13.32 ### chr3 rmsk gene 118801874 118803365 . - . gene_id "HERVL18_3q13.32"; transcript_id "HERVL18_3q13.32"; locus "HERVL18_3q13.32"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0035"; model_cov "1147"; model_pct "19.0"; chr3 rmsk exon 118801874 118802051 983 - . gene_id "HERVL18_3q13.32"; transcript_id "HERVL18_3q13.32"; locus "HERVL18_3q13.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0035"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2758"; repStart "-3112"; chr3 rmsk exon 118802035 118803010 5248 - . gene_id "HERVL18_3q13.32"; transcript_id "HERVL18_3q13.32"; locus "HERVL18_3q13.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0035"; repClass "LTR"; repEnd "974"; repFamily "ERVL"; repLeft "4"; repStart "-5073"; chr3 rmsk exon 118803023 118803365 2819 - . gene_id "HERVL18_3q13.32"; transcript_id "HERVL18_3q13.32"; locus "HERVL18_3q13.32"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0035"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVW_3q13.32 ### chr3 rmsk gene 118842668 118851684 . + . gene_id "HERVW_3q13.32"; transcript_id "HERVW_3q13.32"; locus "HERVW_3q13.32"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0069"; model_cov "8628"; model_pct "100.0"; chr3 rmsk exon 118842668 118845077 6969 + . gene_id "HERVW_3q13.32"; transcript_id "HERVW_3q13.32"; locus "HERVW_3q13.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0069"; repClass "LTR"; repEnd "3021"; repFamily "ERV1"; repLeft "-5605"; repStart "1"; chr3 rmsk exon 118846103 118851684 28556 + . gene_id "HERVW_3q13.32"; transcript_id "HERVW_3q13.32"; locus "HERVW_3q13.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0069"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "3018"; ### MER34B_3q13.32a ### chr3 rmsk gene 119244016 119244641 . - . gene_id "MER34B_3q13.32a"; transcript_id "MER34B_3q13.32a"; locus "MER34B_3q13.32a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0076"; model_cov "591"; model_pct "11.0"; chr3 rmsk exon 119244016 119244494 1853 - . gene_id "MER34B_3q13.32a"; transcript_id "MER34B_3q13.32a"; locus "MER34B_3q13.32a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0076"; repClass "LTR"; repEnd "4015"; repFamily "ERV1"; repLeft "3559"; repStart "-1341"; chr3 rmsk exon 119244506 119244641 698 - . gene_id "MER34B_3q13.32a"; transcript_id "MER34B_3q13.32a"; locus "MER34B_3q13.32a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0076"; repClass "LTR"; repEnd "3067"; repFamily "ERV1"; repLeft "2932"; repStart "-2289"; ### MER34B_3q13.32b ### chr3 rmsk gene 119253277 119257533 . - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0078"; model_cov "2810"; model_pct "52.5"; chr3 rmsk exon 119253277 119253852 3653 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "3737"; repFamily "ERV1"; repLeft "3133"; repStart "-1619"; chr3 rmsk exon 119253974 119255124 3653 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "3263"; repFamily "ERV1"; repLeft "2143"; repStart "-2093"; chr3 rmsk exon 119255125 119255328 872 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1807"; repStart "-3340"; chr3 rmsk exon 119255319 119255402 354 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "1729"; repFamily "ERV1"; repLeft "1674"; repStart "-3627"; chr3 rmsk exon 119255476 119255876 930 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "1539"; repFamily "ERV1"; repLeft "1149"; repStart "-3817"; chr3 rmsk exon 119256269 119256439 746 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "328"; repFamily "ERV1"; repLeft "155"; repStart "-257"; chr3 rmsk exon 119256441 119256552 298 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "1220"; repFamily "ERV1"; repLeft "1109"; repStart "-4136"; chr3 rmsk exon 119257226 119257533 372 - . gene_id "MER34B_3q13.32b"; transcript_id "MER34B_3q13.32b"; locus "MER34B_3q13.32b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0078"; repClass "LTR"; repEnd "-498"; repFamily "ERV1"; repLeft "-819"; repStart "-5854"; ### PRIMAX_3q13.33 ### chr3 rmsk gene 119688771 119693210 . + . gene_id "PRIMAX_3q13.33"; transcript_id "PRIMAX_3q13.33"; locus "PRIMAX_3q13.33"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0008"; model_cov "3850"; model_pct "93.9"; chr3 rmsk exon 119688771 119691141 2675 + . gene_id "PRIMAX_3q13.33"; transcript_id "PRIMAX_3q13.33"; locus "PRIMAX_3q13.33"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0008"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "-2983"; repStart "-2023"; chr3 rmsk exon 119691435 119691506 2675 + . gene_id "PRIMAX_3q13.33"; transcript_id "PRIMAX_3q13.33"; locus "PRIMAX_3q13.33"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0008"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "-658"; repStart "3390"; chr3 rmsk exon 119692098 119693210 2675 + . gene_id "PRIMAX_3q13.33"; transcript_id "PRIMAX_3q13.33"; locus "PRIMAX_3q13.33"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0008"; repClass "LTR"; repEnd "4099"; repFamily "ERV1"; repLeft "-3"; repStart "3445"; ### LTR19_3q13.33a ### chr3 rmsk gene 119978045 119981228 . + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0008"; model_cov "2490"; model_pct "44.6"; chr3 rmsk exon 119978045 119978507 2353 + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0008"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 119978508 119978656 1201 + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0008"; repClass "LTR"; repEnd "-1984"; repFamily "ERV1"; repLeft "-7570"; repStart "-2132"; chr3 rmsk exon 119978637 119979604 6478 + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0008"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "-4302"; repStart "277"; chr3 rmsk exon 119979602 119980358 9307 + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0008"; repClass "LTR"; repEnd "2186"; repFamily "ERV1"; repLeft "-3400"; repStart "1436"; chr3 rmsk exon 119980654 119981228 9307 + . gene_id "LTR19_3q13.33a"; transcript_id "LTR19_3q13.33a"; locus "LTR19_3q13.33a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0008"; repClass "LTR"; repEnd "2772"; repFamily "ERV1"; repLeft "-2814"; repStart "2187"; ### LTR19_3q13.33b ### chr3 rmsk gene 119987334 119990480 . + . gene_id "LTR19_3q13.33b"; transcript_id "LTR19_3q13.33b"; locus "LTR19_3q13.33b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0009"; model_cov "2396"; model_pct "42.9"; chr3 rmsk exon 119987334 119989361 14542 + . gene_id "LTR19_3q13.33b"; transcript_id "LTR19_3q13.33b"; locus "LTR19_3q13.33b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0009"; repClass "LTR"; repEnd "4842"; repFamily "ERV1"; repLeft "-744"; repStart "2761"; chr3 rmsk exon 119989671 119989978 2350 + . gene_id "LTR19_3q13.33b"; transcript_id "LTR19_3q13.33b"; locus "LTR19_3q13.33b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0009"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "5271"; chr3 rmsk exon 119989979 119990480 2618 + . gene_id "LTR19_3q13.33b"; transcript_id "LTR19_3q13.33b"; locus "LTR19_3q13.33b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0009"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFRD_3q13.33 ### chr3 rmsk gene 120505446 120511907 . + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0041"; model_cov "5835"; model_pct "81.0"; chr3 rmsk exon 120505446 120506204 4548 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0041"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 120506247 120508014 9728 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0041"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "1"; chr3 rmsk exon 120508011 120508220 1162 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0041"; repClass "LTR"; repEnd "3502"; repFamily "ERV1"; repLeft "-3703"; repStart "3329"; chr3 rmsk exon 120508216 120509488 6096 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0041"; repClass "LTR"; repEnd "4543"; repFamily "ERV1"; repLeft "-2662"; repStart "3225"; chr3 rmsk exon 120509479 120511327 9960 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0041"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "4702"; chr3 rmsk exon 120511328 120511907 4513 + . gene_id "HERVFRD_3q13.33"; transcript_id "HERVFRD_3q13.33"; locus "HERVFRD_3q13.33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0041"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "-169"; repStart "1"; ### ERVLE_3q13.33a ### chr3 rmsk gene 120579300 120580209 . + . gene_id "ERVLE_3q13.33a"; transcript_id "ERVLE_3q13.33a"; locus "ERVLE_3q13.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0817"; model_cov "788"; model_pct "13.9"; chr3 rmsk exon 120579300 120579672 748 + . gene_id "ERVLE_3q13.33a"; transcript_id "ERVLE_3q13.33a"; locus "ERVLE_3q13.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0817"; repClass "LTR"; repEnd "4356"; repFamily "ERVL"; repLeft "-1311"; repStart "3979"; chr3 rmsk exon 120579788 120580209 745 + . gene_id "ERVLE_3q13.33a"; transcript_id "ERVLE_3q13.33a"; locus "ERVLE_3q13.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0817"; repClass "LTR"; repEnd "4946"; repFamily "ERVL"; repLeft "-721"; repStart "4535"; ### ERV316A3_3q13.33a ### chr3 rmsk gene 120603293 120604294 . - . gene_id "ERV316A3_3q13.33a"; transcript_id "ERV316A3_3q13.33a"; locus "ERV316A3_3q13.33a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0545"; model_cov "572"; model_pct "10.9"; chr3 rmsk exon 120603293 120603785 1068 - . gene_id "ERV316A3_3q13.33a"; transcript_id "ERV316A3_3q13.33a"; locus "ERV316A3_3q13.33a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0545"; repClass "LTR"; repEnd "562"; repFamily "ERVL"; repLeft "9"; repStart "-6"; chr3 rmsk exon 120603921 120604294 655 - . gene_id "ERV316A3_3q13.33a"; transcript_id "ERV316A3_3q13.33a"; locus "ERV316A3_3q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0545"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "4263"; repStart "-391"; ### ERVLE_3q13.33b ### chr3 rmsk gene 120604306 120605379 . - . gene_id "ERVLE_3q13.33b"; transcript_id "ERVLE_3q13.33b"; locus "ERVLE_3q13.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0818"; model_cov "764"; model_pct "13.5"; chr3 rmsk exon 120604306 120604555 506 - . gene_id "ERVLE_3q13.33b"; transcript_id "ERVLE_3q13.33b"; locus "ERVLE_3q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0818"; repClass "LTR"; repEnd "4833"; repFamily "ERVL"; repLeft "4576"; repStart "-834"; chr3 rmsk exon 120604717 120604969 830 - . gene_id "ERVLE_3q13.33b"; transcript_id "ERVLE_3q13.33b"; locus "ERVLE_3q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0818"; repClass "LTR"; repEnd "3317"; repFamily "ERVL"; repLeft "3062"; repStart "-2350"; chr3 rmsk exon 120605129 120605379 1042 - . gene_id "ERVLE_3q13.33b"; transcript_id "ERVLE_3q13.33b"; locus "ERVLE_3q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0818"; repClass "LTR"; repEnd "2992"; repFamily "ERVL"; repLeft "2740"; repStart "-2675"; ### HERVIP10FH_3q13.33 ### chr3 rmsk gene 120616727 120623770 . - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0039"; model_cov "5099"; model_pct "99.9"; chr3 rmsk exon 120616727 120617172 3072 - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0039"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 120617173 120617758 33551 - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0039"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "4522"; repStart "0"; chr3 rmsk exon 120618057 120621378 33551 - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0039"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "1191"; repStart "-581"; chr3 rmsk exon 120621723 120623296 33551 - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0039"; repClass "LTR"; repEnd "1190"; repFamily "ERV1"; repLeft "1"; repStart "-3912"; chr3 rmsk exon 120623297 120623770 3270 - . gene_id "HERVIP10FH_3q13.33"; transcript_id "HERVIP10FH_3q13.33"; locus "HERVIP10FH_3q13.33"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0039"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_3q13.33 ### chr3 rmsk gene 120648751 120650437 . + . gene_id "MER4B_3q13.33"; transcript_id "MER4B_3q13.33"; locus "MER4B_3q13.33"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0096"; model_cov "1060"; model_pct "15.7"; chr3 rmsk exon 120648751 120648870 764 + . gene_id "MER4B_3q13.33"; transcript_id "MER4B_3q13.33"; locus "MER4B_3q13.33"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0096"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "788"; chr3 rmsk exon 120648871 120649130 5215 + . gene_id "MER4B_3q13.33"; transcript_id "MER4B_3q13.33"; locus "MER4B_3q13.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0096"; repClass "LTR"; repEnd "246"; repFamily "ERV1"; repLeft "-6512"; repStart "1"; chr3 rmsk exon 120649443 120650272 5215 + . gene_id "MER4B_3q13.33"; transcript_id "MER4B_3q13.33"; locus "MER4B_3q13.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0096"; repClass "LTR"; repEnd "1062"; repFamily "ERV1"; repLeft "-5696"; repStart "247"; chr3 rmsk exon 120650273 120650437 1210 + . gene_id "MER4B_3q13.33"; transcript_id "MER4B_3q13.33"; locus "MER4B_3q13.33"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0096"; repClass "LTR"; repEnd "871"; repFamily "ERV1"; repLeft "-29"; repStart "707"; ### ERV316A3_3q13.33b ### chr3 rmsk gene 121007649 121011384 . - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0546"; model_cov "2670"; model_pct "51.1"; chr3 rmsk exon 121007649 121007834 491 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "180"; repFamily "ERVL"; repLeft "1"; repStart "-309"; chr3 rmsk exon 121008198 121009781 2725 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "4559"; repFamily "ERVL"; repLeft "2898"; repStart "-667"; chr3 rmsk exon 121009807 121009914 277 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "2722"; repStart "-2395"; chr3 rmsk exon 121009954 121010141 406 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "1854"; repStart "-3184"; chr3 rmsk exon 121010167 121010441 853 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "1524"; repFamily "ERVL"; repLeft "1240"; repStart "-3702"; chr3 rmsk exon 121010527 121010545 335 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "1259"; repFamily "ERVL"; repLeft "1244"; repStart "-3967"; chr3 rmsk exon 121010979 121011384 335 - . gene_id "ERV316A3_3q13.33b"; transcript_id "ERV316A3_3q13.33b"; locus "ERV316A3_3q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0546"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "830"; repStart "-3983"; ### ERVLE_3q13.33c ### chr3 rmsk gene 121127120 121130720 . + . gene_id "ERVLE_3q13.33c"; transcript_id "ERVLE_3q13.33c"; locus "ERVLE_3q13.33c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0819"; model_cov "3361"; model_pct "59.3"; chr3 rmsk exon 121127120 121127288 782 + . gene_id "ERVLE_3q13.33c"; transcript_id "ERVLE_3q13.33c"; locus "ERVLE_3q13.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0819"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "-4444"; repStart "1039"; chr3 rmsk exon 121127749 121130720 2118 + . gene_id "ERVLE_3q13.33c"; transcript_id "ERVLE_3q13.33c"; locus "ERVLE_3q13.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0819"; repClass "LTR"; repEnd "3730"; repFamily "ERVL"; repLeft "-1937"; repStart "553"; ### MER101_3q13.33a ### chr3 rmsk gene 121225111 121226280 . - . gene_id "MER101_3q13.33a"; transcript_id "MER101_3q13.33a"; locus "MER101_3q13.33a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0100"; model_cov "1176"; model_pct "17.7"; chr3 rmsk exon 121225111 121226136 6222 - . gene_id "MER101_3q13.33a"; transcript_id "MER101_3q13.33a"; locus "MER101_3q13.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0100"; repClass "LTR"; repEnd "5927"; repFamily "ERV1"; repLeft "4903"; repStart "-712"; chr3 rmsk exon 121226128 121226280 340 - . gene_id "MER101_3q13.33a"; transcript_id "MER101_3q13.33a"; locus "MER101_3q13.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0100"; repClass "LTR"; repEnd "3503"; repFamily "ERV1"; repLeft "3351"; repStart "-3136"; ### MER101_3q13.33b ### chr3 rmsk gene 121226367 121230881 . - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0101"; model_cov "3607"; model_pct "54.3"; chr3 rmsk exon 121226367 121227298 9443 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "4892"; repFamily "ERV1"; repLeft "3943"; repStart "-1747"; chr3 rmsk exon 121227586 121228292 9443 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "3942"; repFamily "ERV1"; repLeft "3230"; repStart "-2697"; chr3 rmsk exon 121228302 121228445 866 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "3037"; repFamily "ERV1"; repLeft "2891"; repStart "-3602"; chr3 rmsk exon 121228448 121228594 2795 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "2739"; repFamily "ERV1"; repLeft "2591"; repStart "-3900"; chr3 rmsk exon 121228905 121229543 2795 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "2590"; repFamily "ERV1"; repLeft "1962"; repStart "-4049"; chr3 rmsk exon 121229854 121230450 2795 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "1961"; repFamily "ERV1"; repLeft "1383"; repStart "-4678"; chr3 rmsk exon 121230470 121230881 2047 - . gene_id "MER101_3q13.33b"; transcript_id "MER101_3q13.33b"; locus "MER101_3q13.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0101"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "1188"; repStart "-5005"; ### HML3_3q13.33 ### chr3 rmsk gene 121395494 121399876 . - . gene_id "HML3_3q13.33"; transcript_id "HML3_3q13.33"; locus "HML3_3q13.33"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0043"; model_cov "3883"; model_pct "64.5"; chr3 rmsk exon 121395494 121397116 13421 - . gene_id "HML3_3q13.33"; transcript_id "HML3_3q13.33"; locus "HML3_3q13.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0043"; repClass "LTR"; repEnd "5355"; repFamily "ERVK"; repLeft "3723"; repStart "-666"; chr3 rmsk exon 121397117 121398788 14094 - . gene_id "HML3_3q13.33"; transcript_id "HML3_3q13.33"; locus "HML3_3q13.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0043"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1126"; repStart "-3223"; chr3 rmsk exon 121398791 121399367 4695 - . gene_id "HML3_3q13.33"; transcript_id "HML3_3q13.33"; locus "HML3_3q13.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0043"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr3 rmsk exon 121399368 121399876 4207 - . gene_id "HML3_3q13.33"; transcript_id "HML3_3q13.33"; locus "HML3_3q13.33"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0043"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### PABLB_3q13.33 ### chr3 rmsk gene 121604425 121605964 . - . gene_id "PABLB_3q13.33"; transcript_id "PABLB_3q13.33"; locus "PABLB_3q13.33"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0021"; model_cov "1241"; model_pct "17.4"; chr3 rmsk exon 121604425 121604934 3576 - . gene_id "PABLB_3q13.33"; transcript_id "PABLB_3q13.33"; locus "PABLB_3q13.33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0021"; repClass "LTR"; repEnd "6873"; repFamily "ERV1"; repLeft "6366"; repStart "-249"; chr3 rmsk exon 121605232 121605964 3576 - . gene_id "PABLB_3q13.33"; transcript_id "PABLB_3q13.33"; locus "PABLB_3q13.33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0021"; repClass "LTR"; repEnd "6365"; repFamily "ERV1"; repLeft "5631"; repStart "-757"; ### PRIMA41_3q13.33 ### chr3 rmsk gene 121607609 121613599 . - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0037"; model_cov "4357"; model_pct "56.2"; chr3 rmsk exon 121607609 121608411 5968 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "5520"; repFamily "ERV1"; repLeft "4706"; repStart "-2236"; chr3 rmsk exon 121608409 121609179 3143 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3826"; repStart "-3154"; chr3 rmsk exon 121609249 121609596 1276 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "3841"; repFamily "ERV1"; repLeft "3491"; repStart "-3915"; chr3 rmsk exon 121609601 121610635 5007 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "3078"; repFamily "ERV1"; repLeft "2037"; repStart "-4678"; chr3 rmsk exon 121610904 121611103 5007 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "2036"; repFamily "ERV1"; repLeft "1847"; repStart "-5720"; chr3 rmsk exon 121612103 121612788 2012 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "1846"; repFamily "ERV1"; repLeft "1161"; repStart "-5910"; chr3 rmsk exon 121613090 121613599 2012 - . gene_id "PRIMA41_3q13.33"; transcript_id "PRIMA41_3q13.33"; locus "PRIMA41_3q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0037"; repClass "LTR"; repEnd "1160"; repFamily "ERV1"; repLeft "658"; repStart "-6596"; ### ERVLE_3q13.33d ### chr3 rmsk gene 121975840 121976641 . - . gene_id "ERVLE_3q13.33d"; transcript_id "ERVLE_3q13.33d"; locus "ERVLE_3q13.33d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0821"; model_cov "864"; model_pct "15.2"; chr3 rmsk exon 121975840 121976641 1238 - . gene_id "ERVLE_3q13.33d"; transcript_id "ERVLE_3q13.33d"; locus "ERVLE_3q13.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0821"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3072"; repStart "-1731"; ### HERVH_3q21.2a ### chr3 rmsk gene 124752578 124758183 . - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0278"; model_cov "4900"; model_pct "63.5"; chr3 rmsk exon 124752578 124753001 2638 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr3 rmsk exon 124753002 124753374 2619 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 124753373 124753590 1496 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 124753592 124754250 4298 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 124754253 124754745 3468 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr3 rmsk exon 124754745 124754892 911 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 124754887 124757754 16799 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 124757755 124758183 2583 - . gene_id "HERVH_3q21.2a"; transcript_id "HERVH_3q21.2a"; locus "HERVH_3q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0278"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-21"; repStart "0"; ### HERVL_3q21.2 ### chr3 rmsk gene 125615135 125619322 . + . gene_id "HERVL_3q21.2"; transcript_id "HERVL_3q21.2"; locus "HERVL_3q21.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0294"; model_cov "2915"; model_pct "51.6"; chr3 rmsk exon 125615135 125615487 1514 + . gene_id "HERVL_3q21.2"; transcript_id "HERVL_3q21.2"; locus "HERVL_3q21.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0294"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "-270"; repStart "-147"; chr3 rmsk exon 125615488 125615566 483 + . gene_id "HERVL_3q21.2"; transcript_id "HERVL_3q21.2"; locus "HERVL_3q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0294"; repClass "LTR"; repEnd "2833"; repFamily "ERVL"; repLeft "-2821"; repStart "2754"; chr3 rmsk exon 125616038 125618743 19134 + . gene_id "HERVL_3q21.2"; transcript_id "HERVL_3q21.2"; locus "HERVL_3q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0294"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2818"; chr3 rmsk exon 125618744 125619322 2150 + . gene_id "HERVL_3q21.2"; transcript_id "HERVL_3q21.2"; locus "HERVL_3q21.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0294"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVE_3q21.2a ### chr3 rmsk gene 125694140 125698910 . + . gene_id "HERVE_3q21.2a"; transcript_id "HERVE_3q21.2a"; locus "HERVE_3q21.2a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0028"; model_cov "4516"; model_pct "57.8"; chr3 rmsk exon 125694140 125694320 1057 + . gene_id "HERVE_3q21.2a"; transcript_id "HERVE_3q21.2a"; locus "HERVE_3q21.2a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0028"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "-16"; repStart "312"; chr3 rmsk exon 125694405 125695641 31044 + . gene_id "HERVE_3q21.2a"; transcript_id "HERVE_3q21.2a"; locus "HERVE_3q21.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0028"; repClass "LTR"; repEnd "1909"; repFamily "ERV1"; repLeft "-5904"; repStart "647"; chr3 rmsk exon 125695681 125697971 31044 + . gene_id "HERVE_3q21.2a"; transcript_id "HERVE_3q21.2a"; locus "HERVE_3q21.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0028"; repClass "LTR"; repEnd "4248"; repFamily "ERV1"; repLeft "-3565"; repStart "1910"; chr3 rmsk exon 125698016 125698910 31044 + . gene_id "HERVE_3q21.2a"; transcript_id "HERVE_3q21.2a"; locus "HERVE_3q21.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0028"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "4249"; ### HERVE_3q21.2b ### chr3 rmsk gene 125717086 125721147 . + . gene_id "HERVE_3q21.2b"; transcript_id "HERVE_3q21.2b"; locus "HERVE_3q21.2b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0029"; model_cov "4057"; model_pct "51.9"; chr3 rmsk exon 125717086 125721147 29548 + . gene_id "HERVE_3q21.2b"; transcript_id "HERVE_3q21.2b"; locus "HERVE_3q21.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0029"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_3q21.2c ### chr3 rmsk gene 125739718 125743769 . + . gene_id "HERVE_3q21.2c"; transcript_id "HERVE_3q21.2c"; locus "HERVE_3q21.2c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0030"; model_cov "4057"; model_pct "51.9"; chr3 rmsk exon 125739718 125743769 27479 + . gene_id "HERVE_3q21.2c"; transcript_id "HERVE_3q21.2c"; locus "HERVE_3q21.2c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0030"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### ERVLB4_3q21.2 ### chr3 rmsk gene 125764216 125764785 . - . gene_id "ERVLB4_3q21.2"; transcript_id "ERVLB4_3q21.2"; locus "ERVLB4_3q21.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0360"; model_cov "601"; model_pct "10.5"; chr3 rmsk exon 125764216 125764785 2739 - . gene_id "ERVLB4_3q21.2"; transcript_id "ERVLB4_3q21.2"; locus "ERVLB4_3q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0360"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1503"; repStart "-3610"; ### HERVS71_3q21.2 ### chr3 rmsk gene 125831940 125839359 . + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0008"; model_cov "6457"; model_pct "71.9"; chr3 rmsk exon 125831940 125832489 4035 + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0008"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 125832492 125835648 22161 + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0008"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "-5748"; repStart "4"; chr3 rmsk exon 125835664 125838487 14577 + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0008"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "4870"; chr3 rmsk exon 125838485 125838801 2220 + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0008"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr3 rmsk exon 125838802 125839359 4515 + . gene_id "HERVS71_3q21.2"; transcript_id "HERVS71_3q21.2"; locus "HERVS71_3q21.2"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0008"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3q21.2b ### chr3 rmsk gene 125863750 125869497 . + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0279"; model_cov "5110"; model_pct "66.3"; chr3 rmsk exon 125863750 125864094 1905 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 125864097 125866993 19369 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "1"; chr3 rmsk exon 125866990 125867845 6104 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3138"; chr3 rmsk exon 125867848 125868506 4485 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "-2568"; repStart "4488"; chr3 rmsk exon 125868504 125868718 1267 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr3 rmsk exon 125868719 125869094 2276 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 125869096 125869497 2665 + . gene_id "HERVH_3q21.2b"; transcript_id "HERVH_3q21.2b"; locus "HERVH_3q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0279"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HML2_3q21.2 ### chr3 rmsk gene 125890459 125899596 . + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0026"; model_cov "7446"; model_pct "98.8"; chr3 rmsk exon 125890459 125891239 6706 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1"; chr3 rmsk exon 125891209 125891262 317 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915"; chr3 rmsk exon 125891263 125898703 63114 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr3 rmsk exon 125898793 125899573 6625 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1"; chr3 rmsk exon 125899543 125899596 290 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915"; ### MER4B_3q21.2 ### chr3 rmsk gene 126084798 126090891 . + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0097"; model_cov "5631"; model_pct "83.3"; chr3 rmsk exon 126084798 126085370 2427 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "756"; repFamily "ERV1"; repLeft "-10"; repStart "19"; chr3 rmsk exon 126085376 126086384 6713 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "1070"; repFamily "ERV1"; repLeft "-5688"; repStart "1"; chr3 rmsk exon 126086438 126086498 6713 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-5612"; repStart "1071"; chr3 rmsk exon 126086551 126086939 8069 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "1472"; repFamily "ERV1"; repLeft "-5286"; repStart "929"; chr3 rmsk exon 126087477 126088625 8069 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "3082"; repFamily "ERV1"; repLeft "-3676"; repStart "1473"; chr3 rmsk exon 126088619 126089263 3853 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3423"; chr3 rmsk exon 126089263 126090028 9989 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "5243"; repFamily "ERV1"; repLeft "-1515"; repStart "4452"; chr3 rmsk exon 126090054 126090891 9989 + . gene_id "MER4B_3q21.2"; transcript_id "MER4B_3q21.2"; locus "MER4B_3q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0097"; repClass "LTR"; repEnd "6123"; repFamily "ERV1"; repLeft "-635"; repStart "5244"; ### LTR57_3q21.2 ### chr3 rmsk gene 126086940 126087476 . + . gene_id "LTR57_3q21.2"; transcript_id "LTR57_3q21.2"; locus "LTR57_3q21.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0046"; model_cov "585"; model_pct "10.9"; chr3 rmsk exon 126086940 126087476 1525 + . gene_id "LTR57_3q21.2"; transcript_id "LTR57_3q21.2"; locus "LTR57_3q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0046"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-3763"; repStart "995"; ### HML3_3q21.2 ### chr3 rmsk gene 126092095 126096888 . + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0044"; model_cov "3776"; model_pct "62.7"; chr3 rmsk exon 126092095 126092606 4211 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 126092607 126093199 4579 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr3 rmsk exon 126093200 126094719 12495 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1280"; chr3 rmsk exon 126094720 126094939 1656 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr3 rmsk exon 126094941 126096369 11150 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4595"; chr3 rmsk exon 126096370 126096888 4150 + . gene_id "HML3_3q21.2"; transcript_id "HML3_3q21.2"; locus "HML3_3q21.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0044"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR25_3q21.3 ### chr3 rmsk gene 126166134 126170497 . + . gene_id "LTR25_3q21.3"; transcript_id "LTR25_3q21.3"; locus "LTR25_3q21.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0027"; model_cov "2901"; model_pct "40.4"; chr3 rmsk exon 126166134 126166603 2853 + . gene_id "LTR25_3q21.3"; transcript_id "LTR25_3q21.3"; locus "LTR25_3q21.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0027"; repClass "LTR"; repEnd "3190"; repFamily "ERV1"; repLeft "-3998"; repStart "2720"; chr3 rmsk exon 126167924 126170497 10352 + . gene_id "LTR25_3q21.3"; transcript_id "LTR25_3q21.3"; locus "LTR25_3q21.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0027"; repClass "LTR"; repEnd "6664"; repFamily "ERV1"; repLeft "-524"; repStart "4233"; ### HUERSP2_3q21.3 ### chr3 rmsk gene 126243262 126247330 . - . gene_id "HUERSP2_3q21.3"; transcript_id "HUERSP2_3q21.3"; locus "HUERSP2_3q21.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0031"; model_cov "3085"; model_pct "99.9"; chr3 rmsk exon 126243262 126244027 4818 - . gene_id "HUERSP2_3q21.3"; transcript_id "HUERSP2_3q21.3"; locus "HUERSP2_3q21.3"; repName "LTR1F1"; geneRegion "ltr"; locid "HUERS-P2-int_0031"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr3 rmsk exon 126244030 126247093 18007 - . gene_id "HUERSP2_3q21.3"; transcript_id "HUERSP2_3q21.3"; locus "HUERSP2_3q21.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0031"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "2"; repStart "-1"; chr3 rmsk exon 126247095 126247330 1435 - . gene_id "HUERSP2_3q21.3"; transcript_id "HUERSP2_3q21.3"; locus "HUERSP2_3q21.3"; repName "LTR1F1"; geneRegion "ltr"; locid "HUERS-P2-int_0031"; repClass "LTR"; repEnd "729"; repFamily "ERV1"; repLeft "489"; repStart "0"; ### HERVH_3q21.3a ### chr3 rmsk gene 126247331 126248690 . + . gene_id "HERVH_3q21.3a"; transcript_id "HERVH_3q21.3a"; locus "HERVH_3q21.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0280"; model_cov "1262"; model_pct "16.4"; chr3 rmsk exon 126247331 126247771 2670 + . gene_id "HERVH_3q21.3a"; transcript_id "HERVH_3q21.3a"; locus "HERVH_3q21.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0280"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 126247772 126248690 2636 + . gene_id "HERVH_3q21.3a"; transcript_id "HERVH_3q21.3a"; locus "HERVH_3q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0280"; repClass "LTR"; repEnd "1263"; repFamily "ERV1"; repLeft "-6450"; repStart "1"; ### ERVLE_3q21.3a ### chr3 rmsk gene 127122155 127124490 . + . gene_id "ERVLE_3q21.3a"; transcript_id "ERVLE_3q21.3a"; locus "ERVLE_3q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0826"; model_cov "1865"; model_pct "32.9"; chr3 rmsk exon 127122155 127122477 828 + . gene_id "ERVLE_3q21.3a"; transcript_id "ERVLE_3q21.3a"; locus "ERVLE_3q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0826"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "-5094"; repStart "251"; chr3 rmsk exon 127122805 127123521 1452 + . gene_id "ERVLE_3q21.3a"; transcript_id "ERVLE_3q21.3a"; locus "ERVLE_3q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0826"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "-1152"; repStart "3730"; chr3 rmsk exon 127123755 127124490 2085 + . gene_id "ERVLE_3q21.3a"; transcript_id "ERVLE_3q21.3a"; locus "ERVLE_3q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0826"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "-393"; repStart "4516"; ### PRIMA41_3q21.3a ### chr3 rmsk gene 127246156 127246956 . - . gene_id "PRIMA41_3q21.3a"; transcript_id "PRIMA41_3q21.3a"; locus "PRIMA41_3q21.3a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0039"; model_cov "826"; model_pct "10.6"; chr3 rmsk exon 127246156 127246956 2080 - . gene_id "PRIMA41_3q21.3a"; transcript_id "PRIMA41_3q21.3a"; locus "PRIMA41_3q21.3a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0039"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "6679"; repStart "-251"; ### LTR57_3q21.3 ### chr3 rmsk gene 127250672 127251899 . - . gene_id "LTR57_3q21.3"; transcript_id "LTR57_3q21.3"; locus "LTR57_3q21.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0047"; model_cov "1277"; model_pct "23.9"; chr3 rmsk exon 127250672 127251899 5226 - . gene_id "LTR57_3q21.3"; transcript_id "LTR57_3q21.3"; locus "LTR57_3q21.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0047"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "318"; repStart "-3748"; ### MER41_3q21.3a ### chr3 rmsk gene 127397863 127403610 . - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0100"; model_cov "5681"; model_pct "95.5"; chr3 rmsk exon 127397863 127398416 3977 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0100"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 127398417 127401714 11385 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0100"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "1396"; repStart "-2"; chr3 rmsk exon 127401707 127401856 965 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0100"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1868"; repStart "-3929"; chr3 rmsk exon 127401859 127402363 2334 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0100"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "98"; repStart "-5485"; chr3 rmsk exon 127402341 127402978 3855 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0100"; repClass "LTR"; repEnd "622"; repFamily "ERV1"; repLeft "1"; repStart "-5324"; chr3 rmsk exon 127403064 127403610 4137 - . gene_id "MER41_3q21.3a"; transcript_id "MER41_3q21.3a"; locus "MER41_3q21.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0100"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_3q21.3 ### chr3 rmsk gene 127891790 127895430 . + . gene_id "HERVIP10F_3q21.3"; transcript_id "HERVIP10F_3q21.3"; locus "HERVIP10F_3q21.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0032"; model_cov "3332"; model_pct "43.1"; chr3 rmsk exon 127891790 127892008 1431 + . gene_id "HERVIP10F_3q21.3"; transcript_id "HERVIP10F_3q21.3"; locus "HERVIP10F_3q21.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0032"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-7119"; repStart "365"; chr3 rmsk exon 127892006 127894818 23618 + . gene_id "HERVIP10F_3q21.3"; transcript_id "HERVIP10F_3q21.3"; locus "HERVIP10F_3q21.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0032"; repClass "LTR"; repEnd "3629"; repFamily "ERV1"; repLeft "-4108"; repStart "808"; chr3 rmsk exon 127895122 127895384 23618 + . gene_id "HERVIP10F_3q21.3"; transcript_id "HERVIP10F_3q21.3"; locus "HERVIP10F_3q21.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0032"; repClass "LTR"; repEnd "3888"; repFamily "ERV1"; repLeft "-3849"; repStart "3630"; chr3 rmsk exon 127895385 127895430 329 + . gene_id "HERVIP10F_3q21.3"; transcript_id "HERVIP10F_3q21.3"; locus "HERVIP10F_3q21.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0032"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "466"; ### MER41_3q21.3b ### chr3 rmsk gene 128014435 128015206 . + . gene_id "MER41_3q21.3b"; transcript_id "MER41_3q21.3b"; locus "MER41_3q21.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0101"; model_cov "682"; model_pct "11.5"; chr3 rmsk exon 128014435 128015206 3904 + . gene_id "MER41_3q21.3b"; transcript_id "MER41_3q21.3b"; locus "MER41_3q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0101"; repClass "LTR"; repEnd "1330"; repFamily "ERV1"; repLeft "-4616"; repStart "648"; ### ERVLE_3q21.3b ### chr3 rmsk gene 128440297 128442699 . - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0827"; model_cov "1400"; model_pct "24.7"; chr3 rmsk exon 128440297 128440590 374 - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0827"; repClass "LTR"; repEnd "5549"; repFamily "ERVL"; repLeft "5253"; repStart "-118"; chr3 rmsk exon 128440854 128440987 275 - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0827"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "4478"; repStart "-1046"; chr3 rmsk exon 128441507 128441605 307 - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0827"; repClass "LTR"; repEnd "4080"; repFamily "ERVL"; repLeft "3982"; repStart "-1587"; chr3 rmsk exon 128441637 128442054 405 - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0827"; repClass "LTR"; repEnd "3859"; repFamily "ERVL"; repLeft "3421"; repStart "-1808"; chr3 rmsk exon 128442321 128442699 702 - . gene_id "ERVLE_3q21.3b"; transcript_id "ERVLE_3q21.3b"; locus "ERVLE_3q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0827"; repClass "LTR"; repEnd "3059"; repFamily "ERVL"; repLeft "2634"; repStart "-2608"; ### PRIMA41_3q21.3b ### chr3 rmsk gene 128666873 128670003 . + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0040"; model_cov "1708"; model_pct "22.0"; chr3 rmsk exon 128666873 128667145 3138 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "401"; repFamily "ERV1"; repLeft "-120"; repStart "127"; chr3 rmsk exon 128667443 128667567 3138 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "-2"; repStart "402"; chr3 rmsk exon 128667591 128668475 8843 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "2351"; repFamily "ERV1"; repLeft "-5405"; repStart "1470"; chr3 rmsk exon 128668789 128669097 8843 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "2657"; repFamily "ERV1"; repLeft "-5099"; repStart "2352"; chr3 rmsk exon 128669506 128669809 1956 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "-4800"; repStart "2642"; chr3 rmsk exon 128669795 128670003 1330 + . gene_id "PRIMA41_3q21.3b"; transcript_id "PRIMA41_3q21.3b"; locus "PRIMA41_3q21.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0040"; repClass "LTR"; repEnd "4451"; repFamily "ERV1"; repLeft "-3305"; repStart "4243"; ### HERVL_3q21.3 ### chr3 rmsk gene 128825110 128828475 . - . gene_id "HERVL_3q21.3"; transcript_id "HERVL_3q21.3"; locus "HERVL_3q21.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0295"; model_cov "2811"; model_pct "49.7"; chr3 rmsk exon 128825110 128825670 2127 - . gene_id "HERVL_3q21.3"; transcript_id "HERVL_3q21.3"; locus "HERVL_3q21.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0295"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 128825688 128828475 21208 - . gene_id "HERVL_3q21.3"; transcript_id "HERVL_3q21.3"; locus "HERVL_3q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0295"; repClass "LTR"; repEnd "5649"; repFamily "ERVL"; repLeft "2838"; repStart "-5"; ### HERVH_3q21.3b ### chr3 rmsk gene 128829426 128834942 . - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0282"; model_cov "4791"; model_pct "62.1"; chr3 rmsk exon 128829426 128829769 2085 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "72"; repStart "-2"; chr3 rmsk exon 128829770 128830028 1649 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "7595"; repFamily "ERV1"; repLeft "7322"; repStart "-118"; chr3 rmsk exon 128830027 128830241 1420 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 128830246 128830889 4257 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4489"; repStart "-2567"; chr3 rmsk exon 128830893 128831388 3249 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 128831379 128831528 876 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 128831515 128834511 16182 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr3 rmsk exon 128834514 128834942 3231 - . gene_id "HERVH_3q21.3b"; transcript_id "HERVH_3q21.3b"; locus "HERVH_3q21.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0282"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q21.3c ### chr3 rmsk gene 128836083 128842027 . - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0283"; model_cov "4781"; model_pct "62.0"; chr3 rmsk exon 128836083 128836514 3205 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 128836515 128836941 2723 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr3 rmsk exon 128836952 128838666 10384 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "3357"; repStart "-2700"; chr3 rmsk exon 128838667 128841087 6172 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "593"; repStart "-4883"; chr3 rmsk exon 128841148 128841594 2029 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr3 rmsk exon 128841595 128842027 3426 - . gene_id "HERVH_3q21.3c"; transcript_id "HERVH_3q21.3c"; locus "HERVH_3q21.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0283"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_3q21.3 ### chr3 rmsk gene 128854524 128860156 . - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0012"; model_cov "4270"; model_pct "50.7"; chr3 rmsk exon 128854524 128854998 2741 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "98"; repStart "0"; chr3 rmsk exon 128855049 128855478 2733 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7994"; repStart "0"; chr3 rmsk exon 128855499 128856394 5881 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "6318"; repFamily "ERV1"; repLeft "5421"; repStart "-2108"; chr3 rmsk exon 128856410 128856809 2005 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "3153"; repFamily "ERV1"; repLeft "2744"; repStart "-5273"; chr3 rmsk exon 128856808 128857464 14138 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "2535"; repFamily "ERV1"; repLeft "1889"; repStart "-5891"; chr3 rmsk exon 128857767 128859679 14138 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "1888"; repFamily "ERV1"; repLeft "2"; repStart "-6538"; chr3 rmsk exon 128859680 128860156 2833 - . gene_id "HERV3_3q21.3"; transcript_id "HERV3_3q21.3"; locus "HERV3_3q21.3"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0012"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "98"; repStart "0"; ### HML1_3q21.3 ### chr3 rmsk gene 128920573 128924432 . + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0018"; model_cov "2123"; model_pct "34.8"; chr3 rmsk exon 128920573 128921195 3860 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr3 rmsk exon 128921196 128921372 1165 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "180"; repFamily "ERVK"; repLeft "-5916"; repStart "1"; chr3 rmsk exon 128921368 128922058 8565 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "1989"; repFamily "ERVK"; repLeft "-4107"; repStart "1289"; chr3 rmsk exon 128922357 128922813 8565 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "2438"; repFamily "ERVK"; repLeft "-3658"; repStart "1990"; chr3 rmsk exon 128922808 128923595 5828 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5101"; chr3 rmsk exon 128924124 128924432 4116 + . gene_id "HML1_3q21.3"; transcript_id "HML1_3q21.3"; locus "HML1_3q21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0018"; repClass "LTR"; repEnd "276"; repFamily "ERVK"; repLeft "-332"; repStart "3"; ### HERVH_3q21.3d ### chr3 rmsk gene 128959818 128965400 . + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0284"; model_cov "4793"; model_pct "62.1"; chr3 rmsk exon 128959818 128960251 3753 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 128960254 128963103 15154 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "3"; chr3 rmsk exon 128963098 128963245 872 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 128963245 128963726 3109 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr3 rmsk exon 128963729 128964288 3678 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "5044"; repFamily "ERV1"; repLeft "-2669"; repStart "4488"; chr3 rmsk exon 128964365 128964581 1320 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 128964580 128964959 2478 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 128964960 128965400 3784 + . gene_id "HERVH_3q21.3d"; transcript_id "HERVH_3q21.3d"; locus "HERVH_3q21.3d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0284"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_3q22.1a ### chr3 rmsk gene 129896346 129899192 . - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0362"; model_cov "1587"; model_pct "27.8"; chr3 rmsk exon 129896346 129896398 256 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "5692"; repFamily "ERVL"; repLeft "5639"; repStart "-22"; chr3 rmsk exon 129896988 129897159 798 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "5479"; repStart "-62"; chr3 rmsk exon 129897165 129897381 1300 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "5049"; repFamily "ERVL"; repLeft "4834"; repStart "-665"; chr3 rmsk exon 129897383 129898018 3723 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "3167"; repStart "-1900"; chr3 rmsk exon 129898001 129898480 1779 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "4"; repStart "-5211"; chr3 rmsk exon 129898484 129898811 1426 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "90"; repStart "-1"; chr3 rmsk exon 129899104 129899192 1426 - . gene_id "ERVLB4_3q22.1a"; transcript_id "ERVLB4_3q22.1a"; locus "ERVLB4_3q22.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0362"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "2"; repStart "-308"; ### HML3_3q22.1 ### chr3 rmsk gene 129901262 129907337 . + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0045"; model_cov "5057"; model_pct "84.0"; chr3 rmsk exon 129901262 129901748 3786 + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0045"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 129901749 129902412 5290 + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0045"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "1"; chr3 rmsk exon 129902413 129906802 35939 + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0045"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1637"; chr3 rmsk exon 129906803 129907243 3749 + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0045"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "-68"; repStart "1"; chr3 rmsk exon 129907279 129907337 3749 + . gene_id "HML3_3q22.1"; transcript_id "HML3_3q22.1"; locus "HML3_3q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0045"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "445"; ### ERVLB4_3q22.1b ### chr3 rmsk gene 130004788 130005388 . + . gene_id "ERVLB4_3q22.1b"; transcript_id "ERVLB4_3q22.1b"; locus "ERVLB4_3q22.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0363"; model_cov "631"; model_pct "11.0"; chr3 rmsk exon 130004788 130005388 2919 + . gene_id "ERVLB4_3q22.1b"; transcript_id "ERVLB4_3q22.1b"; locus "ERVLB4_3q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0363"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_3q22.1a ### chr3 rmsk gene 130025902 130029968 . - . gene_id "HERVE_3q22.1a"; transcript_id "HERVE_3q22.1a"; locus "HERVE_3q22.1a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0031"; model_cov "4064"; model_pct "52.0"; chr3 rmsk exon 130025902 130029968 27873 - . gene_id "HERVE_3q22.1a"; transcript_id "HERVE_3q22.1a"; locus "HERVE_3q22.1a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0031"; repClass "LTR"; repEnd "5172"; repFamily "ERV1"; repLeft "1108"; repStart "-2641"; ### HERVH_3q22.1a ### chr3 rmsk gene 130059102 130064974 . + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0285"; model_cov "5053"; model_pct "65.5"; chr3 rmsk exon 130059102 130059560 2870 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 130059563 130062811 18861 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr3 rmsk exon 130062811 130063305 3402 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr3 rmsk exon 130063308 130063970 4230 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 130063972 130064188 1325 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 130064187 130064565 2255 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 130064566 130064974 2624 + . gene_id "HERVH_3q22.1a"; transcript_id "HERVH_3q22.1a"; locus "HERVH_3q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0285"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_3q22.1b ### chr3 rmsk gene 130137641 130140911 . - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0286"; model_cov "1819"; model_pct "23.6"; chr3 rmsk exon 130137641 130138038 2496 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr3 rmsk exon 130138040 130138415 2310 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7323"; repStart "0"; chr3 rmsk exon 130138416 130138621 1219 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "5818"; repFamily "ERV1"; repLeft "5600"; repStart "-1895"; chr3 rmsk exon 130138623 130138688 4094 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5090"; repStart "-2564"; chr3 rmsk exon 130139757 130140359 4094 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "4488"; repStart "-2624"; chr3 rmsk exon 130140362 130140911 3852 - . gene_id "HERVH_3q22.1b"; transcript_id "HERVH_3q22.1b"; locus "HERVH_3q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0286"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3442"; repStart "-3720"; ### HERVE_3q22.1b ### chr3 rmsk gene 130140912 130149230 . - . gene_id "HERVE_3q22.1b"; transcript_id "HERVE_3q22.1b"; locus "HERVE_3q22.1b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0032"; model_cov "7808"; model_pct "99.9"; chr3 rmsk exon 130140912 130141408 3776 - . gene_id "HERVE_3q22.1b"; transcript_id "HERVE_3q22.1b"; locus "HERVE_3q22.1b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0032"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 130141409 130149230 60161 - . gene_id "HERVE_3q22.1b"; transcript_id "HERVE_3q22.1b"; locus "HERVE_3q22.1b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0032"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### HERVH_3q22.1c ### chr3 rmsk gene 130149231 130152690 . - . gene_id "HERVH_3q22.1c"; transcript_id "HERVH_3q22.1c"; locus "HERVH_3q22.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0287"; model_cov "3292"; model_pct "42.7"; chr3 rmsk exon 130149231 130149534 1969 - . gene_id "HERVH_3q22.1c"; transcript_id "HERVH_3q22.1c"; locus "HERVH_3q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0287"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "3140"; repStart "-4272"; chr3 rmsk exon 130149521 130152338 15018 - . gene_id "HERVH_3q22.1c"; transcript_id "HERVH_3q22.1c"; locus "HERVH_3q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0287"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr3 rmsk exon 130152341 130152690 2059 - . gene_id "HERVH_3q22.1c"; transcript_id "HERVH_3q22.1c"; locus "HERVH_3q22.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0287"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_3q22.1 ### chr3 rmsk gene 130176684 130184114 . - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0009"; model_cov "6457"; model_pct "71.9"; chr3 rmsk exon 130176684 130177235 4550 - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0009"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 130177236 130177552 2240 - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0009"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr3 rmsk exon 130177550 130180359 14417 - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0009"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr3 rmsk exon 130180375 130183560 22707 - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0009"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "4"; repStart "-5748"; chr3 rmsk exon 130183563 130184114 4178 - . gene_id "HERVS71_3q22.1"; transcript_id "HERVS71_3q22.1"; locus "HERVS71_3q22.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0009"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11_3q22.1 ### chr3 rmsk gene 130443990 130453404 . - . gene_id "HERVK11_3q22.1"; transcript_id "HERVK11_3q22.1"; locus "HERVK11_3q22.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0021"; model_cov "7952"; model_pct "100.0"; chr3 rmsk exon 130443990 130444558 4444 - . gene_id "HERVK11_3q22.1"; transcript_id "HERVK11_3q22.1"; locus "HERVK11_3q22.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0021"; repClass "LTR"; repEnd "413"; repFamily "ERVK"; repLeft "-164"; repStart "-658"; chr3 rmsk exon 130444559 130452304 52423 - . gene_id "HERVK11_3q22.1"; transcript_id "HERVK11_3q22.1"; locus "HERVK11_3q22.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0021"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 130452344 130453404 8117 - . gene_id "HERVK11_3q22.1"; transcript_id "HERVK11_3q22.1"; locus "HERVK11_3q22.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0021"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "1"; repStart "-14"; ### MER101_3q22.1 ### chr3 rmsk gene 131105816 131106247 . - . gene_id "MER101_3q22.1"; transcript_id "MER101_3q22.1"; locus "MER101_3q22.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0102"; model_cov "662"; model_pct "10.0"; chr3 rmsk exon 131105816 131106247 767 - . gene_id "MER101_3q22.1"; transcript_id "MER101_3q22.1"; locus "MER101_3q22.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0102"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "3255"; repStart "-2722"; ### MER34B_3q22.1 ### chr3 rmsk gene 131106300 131107010 . - . gene_id "MER34B_3q22.1"; transcript_id "MER34B_3q22.1"; locus "MER34B_3q22.1"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0079"; model_cov "1027"; model_pct "19.2"; chr3 rmsk exon 131106300 131106370 336 - . gene_id "MER34B_3q22.1"; transcript_id "MER34B_3q22.1"; locus "MER34B_3q22.1"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0079"; repClass "LTR"; repEnd "207"; repFamily "ERV1"; repLeft "133"; repStart "-335"; chr3 rmsk exon 131106371 131106465 405 - . gene_id "MER34B_3q22.1"; transcript_id "MER34B_3q22.1"; locus "MER34B_3q22.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0079"; repClass "LTR"; repEnd "2087"; repFamily "ERV1"; repLeft "1984"; repStart "-3269"; chr3 rmsk exon 131106486 131107010 941 - . gene_id "MER34B_3q22.1"; transcript_id "MER34B_3q22.1"; locus "MER34B_3q22.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0079"; repClass "LTR"; repEnd "1806"; repFamily "ERV1"; repLeft "882"; repStart "-3550"; ### HERVW_3q22.1a ### chr3 rmsk gene 131196861 131198155 . - . gene_id "HERVW_3q22.1a"; transcript_id "HERVW_3q22.1a"; locus "HERVW_3q22.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0070"; model_cov "1005"; model_pct "11.7"; chr3 rmsk exon 131196861 131197194 2440 - . gene_id "HERVW_3q22.1a"; transcript_id "HERVW_3q22.1a"; locus "HERVW_3q22.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0070"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "3"; repStart "-454"; chr3 rmsk exon 131197197 131197488 2331 - . gene_id "HERVW_3q22.1a"; transcript_id "HERVW_3q22.1a"; locus "HERVW_3q22.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0070"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 131197479 131197517 304 - . gene_id "HERVW_3q22.1a"; transcript_id "HERVW_3q22.1a"; locus "HERVW_3q22.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0070"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr3 rmsk exon 131197511 131198155 10593 - . gene_id "HERVW_3q22.1a"; transcript_id "HERVW_3q22.1a"; locus "HERVW_3q22.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0070"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5343"; repStart "-2607"; ### HERVW_3q22.1b ### chr3 rmsk gene 131198227 131199106 . - . gene_id "HERVW_3q22.1b"; transcript_id "HERVW_3q22.1b"; locus "HERVW_3q22.1b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0071"; model_cov "924"; model_pct "10.7"; chr3 rmsk exon 131198227 131199106 10593 - . gene_id "HERVW_3q22.1b"; transcript_id "HERVW_3q22.1b"; locus "HERVW_3q22.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0071"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5095"; repStart "-2607"; ### HERVH_3q22.1d ### chr3 rmsk gene 131509223 131514208 . - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0288"; model_cov "5352"; model_pct "69.4"; chr3 rmsk exon 131509223 131509652 3069 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 131509653 131510228 3710 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7149"; repStart "0"; chr3 rmsk exon 131510210 131510470 1592 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chr3 rmsk exon 131510463 131511275 3595 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "5788"; repFamily "ERV1"; repLeft "4846"; repStart "-1925"; chr3 rmsk exon 131511270 131514162 9543 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "1"; repStart "-4126"; chr3 rmsk exon 131514164 131514208 382 - . gene_id "HERVH_3q22.1d"; transcript_id "HERVH_3q22.1d"; locus "HERVH_3q22.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0288"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "1"; repStart "-419"; ### HARLEQUIN_3q22.1a ### chr3 rmsk gene 132296071 132298144 . - . gene_id "HARLEQUIN_3q22.1a"; transcript_id "HARLEQUIN_3q22.1a"; locus "HARLEQUIN_3q22.1a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0046"; model_cov "1740"; model_pct "25.2"; chr3 rmsk exon 132296071 132296530 3831 - . gene_id "HARLEQUIN_3q22.1a"; transcript_id "HARLEQUIN_3q22.1a"; locus "HARLEQUIN_3q22.1a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0046"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr3 rmsk exon 132296532 132298144 38526 - . gene_id "HARLEQUIN_3q22.1a"; transcript_id "HARLEQUIN_3q22.1a"; locus "HARLEQUIN_3q22.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0046"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5156"; repStart "0"; ### HARLEQUIN_3q22.1b ### chr3 rmsk gene 132298184 132302714 . - . gene_id "HARLEQUIN_3q22.1b"; transcript_id "HARLEQUIN_3q22.1b"; locus "HARLEQUIN_3q22.1b"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0047"; model_cov "4892"; model_pct "70.9"; chr3 rmsk exon 132298184 132302714 38526 - . gene_id "HARLEQUIN_3q22.1b"; transcript_id "HARLEQUIN_3q22.1b"; locus "HARLEQUIN_3q22.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0047"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "2004"; repStart "0"; ### HARLEQUIN_3q22.1c ### chr3 rmsk gene 132303682 132310414 . + . gene_id "HARLEQUIN_3q22.1c"; transcript_id "HARLEQUIN_3q22.1c"; locus "HARLEQUIN_3q22.1c"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0048"; model_cov "6260"; model_pct "90.8"; chr3 rmsk exon 132303682 132309950 49388 + . gene_id "HARLEQUIN_3q22.1c"; transcript_id "HARLEQUIN_3q22.1c"; locus "HARLEQUIN_3q22.1c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0048"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "635"; chr3 rmsk exon 132309952 132310414 4118 + . gene_id "HARLEQUIN_3q22.1c"; transcript_id "HARLEQUIN_3q22.1c"; locus "HARLEQUIN_3q22.1c"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0048"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3q22.1e ### chr3 rmsk gene 133430513 133434933 . + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0289"; model_cov "4092"; model_pct "53.1"; chr3 rmsk exon 133430513 133432830 15534 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "970"; chr3 rmsk exon 133432821 133433323 3287 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 133433326 133433942 2906 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 133433944 133434156 1292 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 133434155 133434532 2479 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 133434533 133434933 2920 + . gene_id "HERVH_3q22.1e"; transcript_id "HERVH_3q22.1e"; locus "HERVH_3q22.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0289"; repClass "LTR"; repEnd "400"; repFamily "ERV1"; repLeft "-50"; repStart "1"; ### HERVL_3q22.1 ### chr3 rmsk gene 133489524 133490242 . + . gene_id "HERVL_3q22.1"; transcript_id "HERVL_3q22.1"; locus "HERVL_3q22.1"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0297"; model_cov "764"; model_pct "13.5"; chr3 rmsk exon 133489524 133490242 1438 + . gene_id "HERVL_3q22.1"; transcript_id "HERVL_3q22.1"; locus "HERVL_3q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0297"; repClass "LTR"; repEnd "3062"; repFamily "ERVL"; repLeft "-2592"; repStart "2298"; ### ERVL_3q22.1 ### chr3 rmsk gene 133510368 133514688 . + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0085"; model_cov "2837"; model_pct "49.3"; chr3 rmsk exon 133510368 133510567 7842 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "1613"; repFamily "ERVL"; repLeft "-4144"; repStart "1408"; chr3 rmsk exon 133510868 133511878 7842 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "2631"; repFamily "ERVL"; repLeft "-3126"; repStart "1614"; chr3 rmsk exon 133511882 133512162 9066 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "4412"; repFamily "ERVL"; repLeft "-1345"; repStart "4140"; chr3 rmsk exon 133512471 133513784 9066 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "5721"; repFamily "ERVL"; repLeft "-36"; repStart "4413"; chr3 rmsk exon 133514076 133514111 9066 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5722"; chr3 rmsk exon 133514114 133514688 3186 + . gene_id "ERVL_3q22.1"; transcript_id "ERVL_3q22.1"; locus "ERVL_3q22.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0085"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "-4"; repStart "-44"; ### HARLEQUIN_3q22.2 ### chr3 rmsk gene 134020936 134027643 . + . gene_id "HARLEQUIN_3q22.2"; transcript_id "HARLEQUIN_3q22.2"; locus "HARLEQUIN_3q22.2"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0049"; model_cov "6254"; model_pct "90.7"; chr3 rmsk exon 134020936 134022086 8569 + . gene_id "HARLEQUIN_3q22.2"; transcript_id "HARLEQUIN_3q22.2"; locus "HARLEQUIN_3q22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0049"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "-5474"; repStart "255"; chr3 rmsk exon 134022070 134023121 41027 + . gene_id "HARLEQUIN_3q22.2"; transcript_id "HARLEQUIN_3q22.2"; locus "HARLEQUIN_3q22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0049"; repClass "LTR"; repEnd "2866"; repFamily "ERV1"; repLeft "-4030"; repStart "1807"; chr3 rmsk exon 134023157 134027181 41027 + . gene_id "HARLEQUIN_3q22.2"; transcript_id "HARLEQUIN_3q22.2"; locus "HARLEQUIN_3q22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0049"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "2867"; chr3 rmsk exon 134027182 134027643 3686 + . gene_id "HARLEQUIN_3q22.2"; transcript_id "HARLEQUIN_3q22.2"; locus "HARLEQUIN_3q22.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0049"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_3q22.2 ### chr3 rmsk gene 134040388 134046893 . + . gene_id "MER101_3q22.2"; transcript_id "MER101_3q22.2"; locus "MER101_3q22.2"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0103"; model_cov "6958"; model_pct "100.0"; chr3 rmsk exon 134040388 134042885 15915 + . gene_id "MER101_3q22.2"; transcript_id "MER101_3q22.2"; locus "MER101_3q22.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0103"; repClass "LTR"; repEnd "2896"; repFamily "ERV1"; repLeft "-3743"; repStart "409"; chr3 rmsk exon 134043058 134043118 11116 + . gene_id "MER101_3q22.2"; transcript_id "MER101_3q22.2"; locus "MER101_3q22.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0103"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3693"; repStart "2886"; chr3 rmsk exon 134043409 134046567 11116 + . gene_id "MER101_3q22.2"; transcript_id "MER101_3q22.2"; locus "MER101_3q22.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0103"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "2228"; chr3 rmsk exon 134046568 134046893 2822 + . gene_id "MER101_3q22.2"; transcript_id "MER101_3q22.2"; locus "MER101_3q22.2"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0103"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-125"; repStart "1"; ### ERVLE_3q22.2a ### chr3 rmsk gene 134421008 134422249 . - . gene_id "ERVLE_3q22.2a"; transcript_id "ERVLE_3q22.2a"; locus "ERVLE_3q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0831"; model_cov "1054"; model_pct "18.6"; chr3 rmsk exon 134421008 134421202 334 - . gene_id "ERVLE_3q22.2a"; transcript_id "ERVLE_3q22.2a"; locus "ERVLE_3q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0831"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5478"; repStart "0"; chr3 rmsk exon 134421396 134421514 456 - . gene_id "ERVLE_3q22.2a"; transcript_id "ERVLE_3q22.2a"; locus "ERVLE_3q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0831"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "5057"; repStart "-493"; chr3 rmsk exon 134421518 134421629 328 - . gene_id "ERVLE_3q22.2a"; transcript_id "ERVLE_3q22.2a"; locus "ERVLE_3q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0831"; repClass "LTR"; repEnd "5589"; repFamily "ERVL"; repLeft "5479"; repStart "-78"; chr3 rmsk exon 134421636 134422249 2556 - . gene_id "ERVLE_3q22.2a"; transcript_id "ERVLE_3q22.2a"; locus "ERVLE_3q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0831"; repClass "LTR"; repEnd "5058"; repFamily "ERVL"; repLeft "4420"; repStart "-609"; ### HERVL40_3q22.2a ### chr3 rmsk gene 135277253 135279417 . - . gene_id "HERVL40_3q22.2a"; transcript_id "HERVL40_3q22.2a"; locus "HERVL40_3q22.2a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0078"; model_cov "1188"; model_pct "21.5"; chr3 rmsk exon 135277253 135277493 1119 - . gene_id "HERVL40_3q22.2a"; transcript_id "HERVL40_3q22.2a"; locus "HERVL40_3q22.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0078"; repClass "LTR"; repEnd "2950"; repFamily "ERVL"; repLeft "2692"; repStart "-2580"; chr3 rmsk exon 135277957 135278932 2801 - . gene_id "HERVL40_3q22.2a"; transcript_id "HERVL40_3q22.2a"; locus "HERVL40_3q22.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0078"; repClass "LTR"; repEnd "931"; repFamily "ERVL"; repLeft "1"; repStart "-4599"; chr3 rmsk exon 135278934 135279417 1684 - . gene_id "HERVL40_3q22.2a"; transcript_id "HERVL40_3q22.2a"; locus "HERVL40_3q22.2a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0078"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP1_3q22.2a ### chr3 rmsk gene 135284875 135287200 . - . gene_id "HUERSP1_3q22.2a"; transcript_id "HUERSP1_3q22.2a"; locus "HUERSP1_3q22.2a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0049"; model_cov "2173"; model_pct "34.7"; chr3 rmsk exon 135284875 135286530 12319 - . gene_id "HUERSP1_3q22.2a"; transcript_id "HUERSP1_3q22.2a"; locus "HUERSP1_3q22.2a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0049"; repClass "LTR"; repEnd "4494"; repFamily "ERV1"; repLeft "2880"; repStart "-1769"; chr3 rmsk exon 135286529 135287053 3574 - . gene_id "HUERSP1_3q22.2a"; transcript_id "HUERSP1_3q22.2a"; locus "HUERSP1_3q22.2a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0049"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "4"; repStart "-5700"; chr3 rmsk exon 135287056 135287200 1170 - . gene_id "HUERSP1_3q22.2a"; transcript_id "HUERSP1_3q22.2a"; locus "HUERSP1_3q22.2a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0049"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "547"; repStart "0"; ### ERVLE_3q22.2b ### chr3 rmsk gene 135316613 135320653 . - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0833"; model_cov "2554"; model_pct "45.1"; chr3 rmsk exon 135316613 135316842 773 - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0833"; repClass "LTR"; repEnd "3474"; repFamily "ERVL"; repLeft "3239"; repStart "-2193"; chr3 rmsk exon 135316945 135317306 4760 - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0833"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "2739"; repStart "-2577"; chr3 rmsk exon 135317612 135317811 4760 - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0833"; repClass "LTR"; repEnd "2738"; repFamily "ERVL"; repLeft "2524"; repStart "-2929"; chr3 rmsk exon 135318673 135319242 4760 - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0833"; repClass "LTR"; repEnd "2523"; repFamily "ERVL"; repLeft "1983"; repStart "-3144"; chr3 rmsk exon 135319546 135320653 4760 - . gene_id "ERVLE_3q22.2b"; transcript_id "ERVLE_3q22.2b"; locus "ERVLE_3q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0833"; repClass "LTR"; repEnd "1982"; repFamily "ERVL"; repLeft "768"; repStart "-3685"; ### HUERSP1_3q22.2b ### chr3 rmsk gene 135512656 135514076 . + . gene_id "HUERSP1_3q22.2b"; transcript_id "HUERSP1_3q22.2b"; locus "HUERSP1_3q22.2b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0050"; model_cov "725"; model_pct "11.6"; chr3 rmsk exon 135512656 135512856 962 + . gene_id "HUERSP1_3q22.2b"; transcript_id "HUERSP1_3q22.2b"; locus "HUERSP1_3q22.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0050"; repClass "LTR"; repEnd "5860"; repFamily "ERV1"; repLeft "-403"; repStart "5459"; chr3 rmsk exon 135513179 135513504 1839 + . gene_id "HUERSP1_3q22.2b"; transcript_id "HUERSP1_3q22.2b"; locus "HUERSP1_3q22.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0050"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5939"; chr3 rmsk exon 135513505 135514076 3438 + . gene_id "HUERSP1_3q22.2b"; transcript_id "HUERSP1_3q22.2b"; locus "HUERSP1_3q22.2b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0050"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### ERV316A3_3q22.2a ### chr3 rmsk gene 135533167 135535008 . - . gene_id "ERV316A3_3q22.2a"; transcript_id "ERV316A3_3q22.2a"; locus "ERV316A3_3q22.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0550"; model_cov "1200"; model_pct "23.0"; chr3 rmsk exon 135533167 135533588 594 - . gene_id "ERV316A3_3q22.2a"; transcript_id "ERV316A3_3q22.2a"; locus "ERV316A3_3q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0550"; repClass "LTR"; repEnd "1514"; repFamily "ERVL"; repLeft "1070"; repStart "-3712"; chr3 rmsk exon 135533750 135534498 594 - . gene_id "ERV316A3_3q22.2a"; transcript_id "ERV316A3_3q22.2a"; locus "ERV316A3_3q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0550"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "313"; repStart "-4157"; chr3 rmsk exon 135534825 135535008 399 - . gene_id "ERV316A3_3q22.2a"; transcript_id "ERV316A3_3q22.2a"; locus "ERV316A3_3q22.2a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0550"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "361"; repStart "-21"; ### ERV316A3_3q22.2b ### chr3 rmsk gene 135666871 135668238 . - . gene_id "ERV316A3_3q22.2b"; transcript_id "ERV316A3_3q22.2b"; locus "ERV316A3_3q22.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0551"; model_cov "754"; model_pct "14.4"; chr3 rmsk exon 135666871 135667354 1711 - . gene_id "ERV316A3_3q22.2b"; transcript_id "ERV316A3_3q22.2b"; locus "ERV316A3_3q22.2b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0551"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 135667361 135668101 2995 - . gene_id "ERV316A3_3q22.2b"; transcript_id "ERV316A3_3q22.2b"; locus "ERV316A3_3q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0551"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4466"; repStart "-6"; chr3 rmsk exon 135668187 135668238 245 - . gene_id "ERV316A3_3q22.2b"; transcript_id "ERV316A3_3q22.2b"; locus "ERV316A3_3q22.2b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0551"; repClass "LTR"; repEnd "90"; repFamily "ERVL"; repLeft "40"; repStart "-390"; ### HERVL40_3q22.2b ### chr3 rmsk gene 135831363 135835812 . - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0079"; model_cov "2001"; model_pct "36.2"; chr3 rmsk exon 135831363 135831838 1624 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 135831839 135832177 1167 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5277"; repStart "0"; chr3 rmsk exon 135832640 135832760 1377 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "2157"; repStart "-3257"; chr3 rmsk exon 135833468 135833725 1240 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "1898"; repStart "-3374"; chr3 rmsk exon 135833731 135834293 2928 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "1403"; repFamily "ERVL"; repLeft "850"; repStart "-4127"; chr3 rmsk exon 135834515 135834776 2928 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "597"; repStart "-4681"; chr3 rmsk exon 135834889 135835453 1385 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "1"; repStart "-4960"; chr3 rmsk exon 135835469 135835812 1509 - . gene_id "HERVL40_3q22.2b"; transcript_id "HERVL40_3q22.2b"; locus "HERVL40_3q22.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0079"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "159"; repStart "-15"; ### HERVW_3q22.2 ### chr3 rmsk gene 135935349 135938908 . + . gene_id "HERVW_3q22.2"; transcript_id "HERVW_3q22.2"; locus "HERVW_3q22.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0072"; model_cov "3248"; model_pct "37.7"; chr3 rmsk exon 135935349 135938267 25174 + . gene_id "HERVW_3q22.2"; transcript_id "HERVW_3q22.2"; locus "HERVW_3q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0072"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3100"; chr3 rmsk exon 135938261 135938299 279 + . gene_id "HERVW_3q22.2"; transcript_id "HERVW_3q22.2"; locus "HERVW_3q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0072"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 135938290 135938581 2381 + . gene_id "HERVW_3q22.2"; transcript_id "HERVW_3q22.2"; locus "HERVW_3q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0072"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 135938582 135938908 2765 + . gene_id "HERVW_3q22.2"; transcript_id "HERVW_3q22.2"; locus "HERVW_3q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0072"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVH_3q22.3a ### chr3 rmsk gene 136217439 136223714 . - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0290"; model_cov "5498"; model_pct "71.3"; chr3 rmsk exon 136217439 136217902 3863 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 136217903 136218333 2599 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr3 rmsk exon 136218346 136220059 7115 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4416"; repStart "-1290"; chr3 rmsk exon 136220053 136220600 7431 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "4137"; repFamily "ERV1"; repLeft "3359"; repStart "-3576"; chr3 rmsk exon 136220897 136222802 7431 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "3547"; repFamily "ERV1"; repLeft "1722"; repStart "-4166"; chr3 rmsk exon 136222857 136223284 1835 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr3 rmsk exon 136223285 136223714 3371 - . gene_id "HERVH_3q22.3a"; transcript_id "HERVH_3q22.3a"; locus "HERVH_3q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0290"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3q22.3a ### chr3 rmsk gene 136233460 136237428 . + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0552"; model_cov "1540"; model_pct "29.5"; chr3 rmsk exon 136233460 136233825 1791 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-92"; repStart "1"; chr3 rmsk exon 136234133 136234192 1791 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-40"; repStart "371"; chr3 rmsk exon 136234216 136234718 1249 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "737"; repFamily "ERVL"; repLeft "-4489"; repStart "233"; chr3 rmsk exon 136234708 136235036 2431 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "4407"; repFamily "ERVL"; repLeft "-819"; repStart "3940"; chr3 rmsk exon 136235652 136236100 2431 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "-91"; repStart "4659"; chr3 rmsk exon 136236573 136236666 338 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5133"; chr3 rmsk exon 136236667 136236693 1453 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "27"; repFamily "ERVL"; repLeft "-435"; repStart "1"; chr3 rmsk exon 136236999 136237428 1453 + . gene_id "ERV316A3_3q22.3a"; transcript_id "ERV316A3_3q22.3a"; locus "ERV316A3_3q22.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0552"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "28"; ### ERVLE_3q22.3a ### chr3 rmsk gene 136577192 136579271 . + . gene_id "ERVLE_3q22.3a"; transcript_id "ERVLE_3q22.3a"; locus "ERVLE_3q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0834"; model_cov "1785"; model_pct "31.5"; chr3 rmsk exon 136577192 136577536 336 + . gene_id "ERVLE_3q22.3a"; transcript_id "ERVLE_3q22.3a"; locus "ERVLE_3q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0834"; repClass "LTR"; repEnd "625"; repFamily "ERVL"; repLeft "-5042"; repStart "285"; chr3 rmsk exon 136577983 136579271 3489 + . gene_id "ERVLE_3q22.3a"; transcript_id "ERVLE_3q22.3a"; locus "ERVLE_3q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0834"; repClass "LTR"; repEnd "2565"; repFamily "ERVL"; repLeft "-3102"; repStart "1120"; ### ERV316A3_3q22.3b ### chr3 rmsk gene 136772226 136773485 . + . gene_id "ERV316A3_3q22.3b"; transcript_id "ERV316A3_3q22.3b"; locus "ERV316A3_3q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0553"; model_cov "551"; model_pct "10.5"; chr3 rmsk exon 136772226 136772385 712 + . gene_id "ERV316A3_3q22.3b"; transcript_id "ERV316A3_3q22.3b"; locus "ERV316A3_3q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0553"; repClass "LTR"; repEnd "4755"; repFamily "ERVL"; repLeft "-471"; repStart "4599"; chr3 rmsk exon 136772416 136772799 1402 + . gene_id "ERV316A3_3q22.3b"; transcript_id "ERV316A3_3q22.3b"; locus "ERV316A3_3q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0553"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "4823"; chr3 rmsk exon 136772802 136772985 1261 + . gene_id "ERV316A3_3q22.3b"; transcript_id "ERV316A3_3q22.3b"; locus "ERV316A3_3q22.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0553"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "-233"; repStart "1"; chr3 rmsk exon 136773284 136773485 1261 + . gene_id "ERV316A3_3q22.3b"; transcript_id "ERV316A3_3q22.3b"; locus "ERV316A3_3q22.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0553"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-7"; repStart "219"; ### ERVLE_3q22.3b ### chr3 rmsk gene 136893758 136894683 . - . gene_id "ERVLE_3q22.3b"; transcript_id "ERVLE_3q22.3b"; locus "ERVLE_3q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0836"; model_cov "1090"; model_pct "19.2"; chr3 rmsk exon 136893758 136894683 1083 - . gene_id "ERVLE_3q22.3b"; transcript_id "ERVLE_3q22.3b"; locus "ERVLE_3q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0836"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "4171"; repStart "-406"; ### HERVH_3q22.3b ### chr3 rmsk gene 137595601 137601190 . + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0291"; model_cov "4849"; model_pct "62.9"; chr3 rmsk exon 137595601 137596048 3355 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 137596051 137598888 15543 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr3 rmsk exon 137598875 137599728 6238 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr3 rmsk exon 137599731 137600392 4620 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 137600394 137600609 1421 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 137600610 137600681 477 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "7394"; repFamily "ERV1"; repLeft "-319"; repStart "7324"; chr3 rmsk exon 137600681 137600741 413 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7658"; chr3 rmsk exon 137600742 137601190 3406 + . gene_id "HERVH_3q22.3b"; transcript_id "HERVH_3q22.3b"; locus "HERVH_3q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0291"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q22.3c ### chr3 rmsk gene 137826609 137827292 . + . gene_id "ERVLE_3q22.3c"; transcript_id "ERVLE_3q22.3c"; locus "ERVLE_3q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0837"; model_cov "675"; model_pct "11.9"; chr3 rmsk exon 137826609 137827292 1019 + . gene_id "ERVLE_3q22.3c"; transcript_id "ERVLE_3q22.3c"; locus "ERVLE_3q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0837"; repClass "LTR"; repEnd "975"; repFamily "ERVL"; repLeft "-4692"; repStart "300"; ### ERV316A3_3q22.3c ### chr3 rmsk gene 137937624 137944889 . - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0554"; model_cov "5270"; model_pct "100.0"; chr3 rmsk exon 137937624 137937943 594 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "97"; repStart "0"; chr3 rmsk exon 137938012 137938116 317 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5118"; repStart "0"; chr3 rmsk exon 137938974 137941917 13691 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "5123"; repFamily "ERVL"; repLeft "2166"; repStart "-103"; chr3 rmsk exon 137942141 137943114 13691 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "2165"; repFamily "ERVL"; repLeft "1240"; repStart "-3061"; chr3 rmsk exon 137943300 137944548 13691 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "1511"; repFamily "ERVL"; repLeft "231"; repStart "-3715"; chr3 rmsk exon 137944555 137944673 274 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "272"; repStart "-6"; chr3 rmsk exon 137944674 137944889 439 - . gene_id "ERV316A3_3q22.3c"; transcript_id "ERV316A3_3q22.3c"; locus "ERV316A3_3q22.3c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0554"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "-28"; repStart "-238"; ### ERV316A3_3q22.3d ### chr3 rmsk gene 138137127 138139740 . - . gene_id "ERV316A3_3q22.3d"; transcript_id "ERV316A3_3q22.3d"; locus "ERV316A3_3q22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0555"; model_cov "1273"; model_pct "24.4"; chr3 rmsk exon 138137127 138137369 1189 - . gene_id "ERV316A3_3q22.3d"; transcript_id "ERV316A3_3q22.3d"; locus "ERV316A3_3q22.3d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0555"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "206"; repStart "-6"; chr3 rmsk exon 138137665 138137873 1189 - . gene_id "ERV316A3_3q22.3d"; transcript_id "ERV316A3_3q22.3d"; locus "ERV316A3_3q22.3d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0555"; repClass "LTR"; repEnd "205"; repFamily "ERVL"; repLeft "1"; repStart "-257"; chr3 rmsk exon 138137913 138138925 4706 - . gene_id "ERV316A3_3q22.3d"; transcript_id "ERV316A3_3q22.3d"; locus "ERV316A3_3q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0555"; repClass "LTR"; repEnd "5160"; repFamily "ERVL"; repLeft "4124"; repStart "-66"; chr3 rmsk exon 138139495 138139740 4706 - . gene_id "ERV316A3_3q22.3d"; transcript_id "ERV316A3_3q22.3d"; locus "ERV316A3_3q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0555"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "3886"; repStart "-1103"; ### ERV316A3_3q23a ### chr3 rmsk gene 139132093 139135827 . + . gene_id "ERV316A3_3q23a"; transcript_id "ERV316A3_3q23a"; locus "ERV316A3_3q23a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0557"; model_cov "2914"; model_pct "55.8"; chr3 rmsk exon 139132093 139132463 622 + . gene_id "ERV316A3_3q23a"; transcript_id "ERV316A3_3q23a"; locus "ERV316A3_3q23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0557"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr3 rmsk exon 139132532 139134763 3369 + . gene_id "ERV316A3_3q23a"; transcript_id "ERV316A3_3q23a"; locus "ERV316A3_3q23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0557"; repClass "LTR"; repEnd "2283"; repFamily "ERVL"; repLeft "-2943"; repStart "75"; chr3 rmsk exon 139135147 139135827 1764 + . gene_id "ERV316A3_3q23a"; transcript_id "ERV316A3_3q23a"; locus "ERV316A3_3q23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0557"; repClass "LTR"; repEnd "2985"; repFamily "ERVL"; repLeft "-2241"; repStart "2279"; ### ERVLE_3q23a ### chr3 rmsk gene 140626620 140630460 . + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0838"; model_cov "3390"; model_pct "59.8"; chr3 rmsk exon 140626620 140626758 1302 + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0838"; repClass "LTR"; repEnd "1592"; repFamily "ERVL"; repLeft "-4075"; repStart "1461"; chr3 rmsk exon 140627055 140627214 1302 + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0838"; repClass "LTR"; repEnd "1752"; repFamily "ERVL"; repLeft "-3915"; repStart "1593"; chr3 rmsk exon 140627516 140628115 1368 + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0838"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-3264"; repStart "1753"; chr3 rmsk exon 140628147 140629600 3431 + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0838"; repClass "LTR"; repEnd "3932"; repFamily "ERVL"; repLeft "-1735"; repStart "2393"; chr3 rmsk exon 140629611 140630460 2793 + . gene_id "ERVLE_3q23a"; transcript_id "ERVLE_3q23a"; locus "ERVLE_3q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0838"; repClass "LTR"; repEnd "4981"; repFamily "ERVL"; repLeft "-686"; repStart "4070"; ### ERVLE_3q23b ### chr3 rmsk gene 140779115 140780705 . + . gene_id "ERVLE_3q23b"; transcript_id "ERVLE_3q23b"; locus "ERVLE_3q23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0839"; model_cov "1710"; model_pct "30.2"; chr3 rmsk exon 140779115 140780705 3133 + . gene_id "ERVLE_3q23b"; transcript_id "ERVLE_3q23b"; locus "ERVLE_3q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0839"; repClass "LTR"; repEnd "5578"; repFamily "ERVL"; repLeft "-89"; repStart "3868"; ### ERVLE_3q23c ### chr3 rmsk gene 140870908 140872014 . + . gene_id "ERVLE_3q23c"; transcript_id "ERVLE_3q23c"; locus "ERVLE_3q23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0840"; model_cov "1116"; model_pct "19.7"; chr3 rmsk exon 140870908 140872014 2171 + . gene_id "ERVLE_3q23c"; transcript_id "ERVLE_3q23c"; locus "ERVLE_3q23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0840"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1858"; repStart "2693"; ### ERVLE_3q23d ### chr3 rmsk gene 140879129 140879830 . + . gene_id "ERVLE_3q23d"; transcript_id "ERVLE_3q23d"; locus "ERVLE_3q23d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0841"; model_cov "616"; model_pct "10.9"; chr3 rmsk exon 140879129 140879830 1648 + . gene_id "ERVLE_3q23d"; transcript_id "ERVLE_3q23d"; locus "ERVLE_3q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0841"; repClass "LTR"; repEnd "4572"; repFamily "ERVL"; repLeft "-1095"; repStart "3956"; ### ERV316A3_3q23b ### chr3 rmsk gene 140999199 141000339 . - . gene_id "ERV316A3_3q23b"; transcript_id "ERV316A3_3q23b"; locus "ERV316A3_3q23b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0559"; model_cov "1158"; model_pct "22.2"; chr3 rmsk exon 140999199 140999994 2314 - . gene_id "ERV316A3_3q23b"; transcript_id "ERV316A3_3q23b"; locus "ERV316A3_3q23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0559"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4264"; repStart "-142"; chr3 rmsk exon 141000011 141000339 1203 - . gene_id "ERV316A3_3q23b"; transcript_id "ERV316A3_3q23b"; locus "ERV316A3_3q23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0559"; repClass "LTR"; repEnd "4232"; repFamily "ERVL"; repLeft "3894"; repStart "-994"; ### HERVH_3q23a ### chr3 rmsk gene 141204901 141211729 . + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0292"; model_cov "5982"; model_pct "77.6"; chr3 rmsk exon 141204901 141205306 2923 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 141205309 141208386 19938 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 141208366 141209199 5718 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr3 rmsk exon 141209203 141209386 1215 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr3 rmsk exon 141209373 141211323 15079 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5769"; chr3 rmsk exon 141211324 141211729 2953 + . gene_id "HERVH_3q23a"; transcript_id "HERVH_3q23a"; locus "HERVH_3q23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0292"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_3q23b ### chr3 rmsk gene 141692184 141696444 . - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0293"; model_cov "4571"; model_pct "59.3"; chr3 rmsk exon 141692184 141692344 1001 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "313"; repFamily "ERV1"; repLeft "141"; repStart "-137"; chr3 rmsk exon 141692345 141692676 2468 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "7173"; repStart "-208"; chr3 rmsk exon 141692736 141692920 1299 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "6943"; repFamily "ERV1"; repLeft "6759"; repStart "-770"; chr3 rmsk exon 141692906 141693433 2262 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "5761"; repFamily "ERV1"; repLeft "4888"; repStart "-1952"; chr3 rmsk exon 141693434 141693629 1150 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "3140"; repStart "-4375"; chr3 rmsk exon 141693609 141696292 14713 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "11"; repStart "-4718"; chr3 rmsk exon 141696298 141696444 1004 - . gene_id "HERVH_3q23b"; transcript_id "HERVH_3q23b"; locus "HERVH_3q23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0293"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "304"; repStart "0"; ### HERVFH21_3q23 ### chr3 rmsk gene 141696488 141702980 . - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0008"; model_cov "6801"; model_pct "100.0"; chr3 rmsk exon 141696488 141696851 2147 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "1"; repStart "-76"; chr3 rmsk exon 141696852 141698212 7895 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "6111"; repFamily "ERV1"; repLeft "3423"; repStart "-418"; chr3 rmsk exon 141698820 141698960 396 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "6004"; repFamily "ERV1"; repLeft "5861"; repStart "-525"; chr3 rmsk exon 141698965 141700512 8540 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "4717"; repFamily "ERV1"; repLeft "3074"; repStart "-1812"; chr3 rmsk exon 141700510 141701241 5332 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "2291"; repFamily "ERV1"; repLeft "1554"; repStart "-4238"; chr3 rmsk exon 141701239 141702555 6033 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "1466"; repFamily "ERV1"; repLeft "-124"; repStart "-5063"; chr3 rmsk exon 141702556 141702980 2580 - . gene_id "HERVFH21_3q23"; transcript_id "HERVFH21_3q23"; locus "HERVFH21_3q23"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0008"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_3q23a ### chr3 rmsk gene 141819790 141821513 . + . gene_id "HERVW_3q23a"; transcript_id "HERVW_3q23a"; locus "HERVW_3q23a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0073"; model_cov "1414"; model_pct "16.4"; chr3 rmsk exon 141819790 141821204 12262 + . gene_id "HERVW_3q23a"; transcript_id "HERVW_3q23a"; locus "HERVW_3q23a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0073"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7212"; chr3 rmsk exon 141821205 141821513 2540 + . gene_id "HERVW_3q23a"; transcript_id "HERVW_3q23a"; locus "HERVW_3q23a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0073"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER34B_3q23 ### chr3 rmsk gene 142242347 142244861 . + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0081"; model_cov "1444"; model_pct "27.0"; chr3 rmsk exon 142242347 142242818 1646 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "27"; chr3 rmsk exon 142242821 142243361 683 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "-2134"; repFamily "ERV1"; repLeft "-7490"; repStart "-2835"; chr3 rmsk exon 142243381 142243455 355 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "-1897"; repFamily "ERV1"; repLeft "-7253"; repStart "-1958"; chr3 rmsk exon 142243764 142243868 394 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "-4704"; repStart "547"; chr3 rmsk exon 142243876 142243946 267 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "-1640"; repFamily "ERV1"; repLeft "-6996"; repStart "-1706"; chr3 rmsk exon 142243928 142244189 818 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "-3535"; repStart "1546"; chr3 rmsk exon 142244622 142244861 818 + . gene_id "MER34B_3q23"; transcript_id "MER34B_3q23"; locus "MER34B_3q23"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0081"; repClass "LTR"; repEnd "2058"; repFamily "ERV1"; repLeft "-3298"; repStart "1822"; ### HUERSP3B_3q23 ### chr3 rmsk gene 142278954 142289224 . + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; category "unknown"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0030"; model_cov "7187"; model_pct "96.9"; chr3 rmsk exon 142278954 142279547 2795 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr3 rmsk exon 142279592 142279685 356 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "133"; repFamily "ERV1"; repLeft "-7285"; repStart "38"; chr3 rmsk exon 142279694 142279748 255 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "-129"; repFamily "ERV1"; repLeft "-7547"; repStart "-182"; chr3 rmsk exon 142279740 142280580 14487 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "1165"; repFamily "ERV1"; repLeft "-6253"; repStart "278"; chr3 rmsk exon 142281199 142282698 14487 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "3167"; repFamily "ERV1"; repLeft "-4251"; repStart "1396"; chr3 rmsk exon 142283127 142284585 14487 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "4894"; repFamily "ERV1"; repLeft "-2524"; repStart "3168"; chr3 rmsk exon 142284586 142284603 3738 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "18"; repFamily "ERV1"; repLeft "-594"; repStart "1"; chr3 rmsk exon 142285032 142285638 3738 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "19"; chr3 rmsk exon 142285641 142288065 14455 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "6946"; repFamily "ERV1"; repLeft "-472"; repStart "4489"; chr3 rmsk exon 142288401 142288598 1211 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "7418"; repFamily "ERV1"; repLeft "0"; repStart "7220"; chr3 rmsk exon 142288599 142289224 3070 + . gene_id "HUERSP3B_3q23"; transcript_id "HUERSP3B_3q23"; locus "HUERSP3B_3q23"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0030"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_3q23b ### chr3 rmsk gene 142438179 142443654 . + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0074"; model_cov "4781"; model_pct "55.4"; chr3 rmsk exon 142438179 142438295 935 + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0074"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "-6762"; repStart "1748"; chr3 rmsk exon 142438293 142442703 36145 + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0074"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1679"; chr3 rmsk exon 142442695 142442729 273 + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0074"; repClass "LTR"; repEnd "7547"; repFamily "ERV1"; repLeft "-1079"; repStart "7513"; chr3 rmsk exon 142443037 142443328 2464 + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0074"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 142443329 142443654 2392 + . gene_id "HERVW_3q23b"; transcript_id "HERVW_3q23b"; locus "HERVW_3q23b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0074"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### LTR25_3q24a ### chr3 rmsk gene 143104432 143109993 . + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0028"; model_cov "5288"; model_pct "73.6"; chr3 rmsk exon 143104432 143104669 526 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "276"; repFamily "ERV1"; repLeft "-6912"; repStart "2"; chr3 rmsk exon 143104670 143105075 2054 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "942"; repFamily "ERV1"; repLeft "-6246"; repStart "505"; chr3 rmsk exon 143105927 143106055 680 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "1745"; repFamily "ERV1"; repLeft "-5443"; repStart "1621"; chr3 rmsk exon 143106056 143108916 17026 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "6301"; repFamily "ERV1"; repLeft "-887"; repStart "2318"; chr3 rmsk exon 143109212 143109316 17026 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "6400"; repFamily "ERV1"; repLeft "-788"; repStart "6302"; chr3 rmsk exon 143109616 143109993 17026 + . gene_id "LTR25_3q24a"; transcript_id "LTR25_3q24a"; locus "LTR25_3q24a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0028"; repClass "LTR"; repEnd "6773"; repFamily "ERV1"; repLeft "-415"; repStart "6401"; ### MER61_3q24a ### chr3 rmsk gene 143105080 143105917 . + . gene_id "MER61_3q24a"; transcript_id "MER61_3q24a"; locus "MER61_3q24a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0096"; model_cov "760"; model_pct "14.6"; chr3 rmsk exon 143105080 143105917 4215 + . gene_id "MER61_3q24a"; transcript_id "MER61_3q24a"; locus "MER61_3q24a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0096"; repClass "LTR"; repEnd "4827"; repFamily "ERV1"; repLeft "-390"; repStart "4067"; ### ERV316A3_3q24a ### chr3 rmsk gene 143212373 143215188 . + . gene_id "ERV316A3_3q24a"; transcript_id "ERV316A3_3q24a"; locus "ERV316A3_3q24a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0560"; model_cov "1572"; model_pct "30.1"; chr3 rmsk exon 143212373 143212630 512 + . gene_id "ERV316A3_3q24a"; transcript_id "ERV316A3_3q24a"; locus "ERV316A3_3q24a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0560"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "-141"; repStart "4"; chr3 rmsk exon 143213021 143214419 3672 + . gene_id "ERV316A3_3q24a"; transcript_id "ERV316A3_3q24a"; locus "ERV316A3_3q24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0560"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "-272"; repStart "3545"; chr3 rmsk exon 143214602 143214776 538 + . gene_id "ERV316A3_3q24a"; transcript_id "ERV316A3_3q24a"; locus "ERV316A3_3q24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0560"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "5062"; chr3 rmsk exon 143214778 143215188 1552 + . gene_id "ERV316A3_3q24a"; transcript_id "ERV316A3_3q24a"; locus "ERV316A3_3q24a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0560"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### ERVLB4_3q24a ### chr3 rmsk gene 143256881 143260791 . - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0366"; model_cov "2699"; model_pct "47.2"; chr3 rmsk exon 143256881 143257240 1504 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "6"; repStart "-48"; chr3 rmsk exon 143257253 143257689 1016 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5086"; repStart "-9"; chr3 rmsk exon 143257687 143257937 8200 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "4339"; repStart "-1128"; chr3 rmsk exon 143258238 143259353 8200 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "4338"; repFamily "ERVL"; repLeft "3205"; repStart "-1376"; chr3 rmsk exon 143259648 143259821 8200 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "3204"; repFamily "ERVL"; repLeft "3032"; repStart "-2510"; chr3 rmsk exon 143260288 143260791 2690 - . gene_id "ERVLB4_3q24a"; transcript_id "ERVLB4_3q24a"; locus "ERVLB4_3q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0366"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "2477"; repStart "-2709"; ### HERVH_3q24a ### chr3 rmsk gene 143797445 143805925 . + . gene_id "HERVH_3q24a"; transcript_id "HERVH_3q24a"; locus "HERVH_3q24a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0294"; model_cov "7712"; model_pct "100.0"; chr3 rmsk exon 143797445 143797939 2802 + . gene_id "HERVH_3q24a"; transcript_id "HERVH_3q24a"; locus "HERVH_3q24a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0294"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 143797942 143805476 25930 + . gene_id "HERVH_3q24a"; transcript_id "HERVH_3q24a"; locus "HERVH_3q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0294"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 143805477 143805925 3109 + . gene_id "HERVH_3q24a"; transcript_id "HERVH_3q24a"; locus "HERVH_3q24a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0294"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_3q24a ### chr3 rmsk gene 143920588 143924620 . - . gene_id "HERVL_3q24a"; transcript_id "HERVL_3q24a"; locus "HERVL_3q24a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0298"; model_cov "3603"; model_pct "63.7"; chr3 rmsk exon 143920588 143920646 320 - . gene_id "HERVL_3q24a"; transcript_id "HERVL_3q24a"; locus "HERVL_3q24a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0298"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "384"; repStart "-7"; chr3 rmsk exon 143920676 143921063 2698 - . gene_id "HERVL_3q24a"; transcript_id "HERVL_3q24a"; locus "HERVL_3q24a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0298"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "-110"; repStart "-61"; chr3 rmsk exon 143921064 143924620 28074 - . gene_id "HERVL_3q24a"; transcript_id "HERVL_3q24a"; locus "HERVL_3q24a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0298"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2051"; repStart "0"; ### ERVLE_3q24a ### chr3 rmsk gene 144179993 144181431 . + . gene_id "ERVLE_3q24a"; transcript_id "ERVLE_3q24a"; locus "ERVLE_3q24a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0843"; model_cov "872"; model_pct "15.4"; chr3 rmsk exon 144179993 144180465 630 + . gene_id "ERVLE_3q24a"; transcript_id "ERVLE_3q24a"; locus "ERVLE_3q24a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0843"; repClass "LTR"; repEnd "1456"; repFamily "ERVL"; repLeft "-4211"; repStart "1150"; chr3 rmsk exon 144180767 144180995 630 + . gene_id "ERVLE_3q24a"; transcript_id "ERVLE_3q24a"; locus "ERVLE_3q24a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0843"; repClass "LTR"; repEnd "1693"; repFamily "ERVL"; repLeft "-3974"; repStart "1457"; chr3 rmsk exon 144181116 144181431 262 + . gene_id "ERVLE_3q24a"; transcript_id "ERVLE_3q24a"; locus "ERVLE_3q24a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0843"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-3439"; repStart "1898"; ### MER4B_3q24 ### chr3 rmsk gene 144201651 144203105 . - . gene_id "MER4B_3q24"; transcript_id "MER4B_3q24"; locus "MER4B_3q24"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0098"; model_cov "1202"; model_pct "17.8"; chr3 rmsk exon 144201651 144202476 4458 - . gene_id "MER4B_3q24"; transcript_id "MER4B_3q24"; locus "MER4B_3q24"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0098"; repClass "LTR"; repEnd "6283"; repFamily "ERV1"; repLeft "5467"; repStart "-475"; chr3 rmsk exon 144202734 144203105 4458 - . gene_id "MER4B_3q24"; transcript_id "MER4B_3q24"; locus "MER4B_3q24"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0098"; repClass "LTR"; repEnd "5466"; repFamily "ERV1"; repLeft "5080"; repStart "-1292"; ### HERVL_3q24b ### chr3 rmsk gene 144204007 144210621 . - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0299"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 144204007 144204084 321 - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0299"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr3 rmsk exon 144204097 144204521 3027 - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0299"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr3 rmsk exon 144204522 144210135 43768 - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0299"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 144210136 144210171 3084 - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0299"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr3 rmsk exon 144210212 144210621 3084 - . gene_id "HERVL_3q24b"; transcript_id "HERVL_3q24b"; locus "HERVL_3q24b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0299"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "2"; repStart "-40"; ### ERV316A3_3q24b ### chr3 rmsk gene 144244465 144247518 . - . gene_id "ERV316A3_3q24b"; transcript_id "ERV316A3_3q24b"; locus "ERV316A3_3q24b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0561"; model_cov "2472"; model_pct "47.3"; chr3 rmsk exon 144244465 144244868 885 - . gene_id "ERV316A3_3q24b"; transcript_id "ERV316A3_3q24b"; locus "ERV316A3_3q24b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0561"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "21"; repStart "-13"; chr3 rmsk exon 144245036 144245412 817 - . gene_id "ERV316A3_3q24b"; transcript_id "ERV316A3_3q24b"; locus "ERV316A3_3q24b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0561"; repClass "LTR"; repEnd "5015"; repFamily "ERVL"; repLeft "4616"; repStart "-211"; chr3 rmsk exon 144245431 144246283 2080 - . gene_id "ERV316A3_3q24b"; transcript_id "ERV316A3_3q24b"; locus "ERV316A3_3q24b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0561"; repClass "LTR"; repEnd "4418"; repFamily "ERVL"; repLeft "3544"; repStart "-808"; chr3 rmsk exon 144246353 144247518 2316 - . gene_id "ERV316A3_3q24b"; transcript_id "ERV316A3_3q24b"; locus "ERV316A3_3q24b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0561"; repClass "LTR"; repEnd "3063"; repFamily "ERVL"; repLeft "1864"; repStart "-2163"; ### HERVL_3q24c ### chr3 rmsk gene 144504509 144506623 . - . gene_id "HERVL_3q24c"; transcript_id "HERVL_3q24c"; locus "HERVL_3q24c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0300"; model_cov "1680"; model_pct "29.7"; chr3 rmsk exon 144504509 144504944 2825 - . gene_id "HERVL_3q24c"; transcript_id "HERVL_3q24c"; locus "HERVL_3q24c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0300"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 144504945 144506623 13118 - . gene_id "HERVL_3q24c"; transcript_id "HERVL_3q24c"; locus "HERVL_3q24c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0300"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3974"; repStart "0"; ### ERVLB4_3q24b ### chr3 rmsk gene 145051434 145059339 . + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0369"; model_cov "4877"; model_pct "85.4"; chr3 rmsk exon 145051434 145051849 1402 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "-68"; repStart "44"; chr3 rmsk exon 145052039 145053427 7093 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "1892"; repFamily "ERVL"; repLeft "-3822"; repStart "537"; chr3 rmsk exon 145054645 145055794 5413 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-2309"; repStart "2181"; chr3 rmsk exon 145055795 145056341 2045 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "-80"; repStart "-46"; chr3 rmsk exon 145056386 145056466 1709 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-8"; repStart "449"; chr3 rmsk exon 145056467 145058274 11546 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "5216"; repFamily "ERVL"; repLeft "-498"; repStart "3405"; chr3 rmsk exon 145058306 145058454 11546 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "5383"; repFamily "ERVL"; repLeft "-331"; repStart "5217"; chr3 rmsk exon 145058500 145058791 11546 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "-9"; repStart "5384"; chr3 rmsk exon 145058804 145059250 1447 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr3 rmsk exon 145059290 145059339 1447 + . gene_id "ERVLB4_3q24b"; transcript_id "ERVLB4_3q24b"; locus "ERVLB4_3q24b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0369"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "475"; ### HERVH_3q24b ### chr3 rmsk gene 145111268 145113190 . - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0295"; model_cov "1550"; model_pct "20.1"; chr3 rmsk exon 145111268 145111676 2707 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 145111677 145112055 2326 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 145112054 145112272 1260 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 145112270 145112930 4314 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 145112933 145113056 819 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3868"; repStart "-3720"; chr3 rmsk exon 145113038 145113190 978 - . gene_id "HERVH_3q24b"; transcript_id "HERVH_3q24b"; locus "HERVH_3q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0295"; repClass "LTR"; repEnd "2682"; repFamily "ERV1"; repLeft "2531"; repStart "-5031"; ### HERVH_3q24c ### chr3 rmsk gene 145113191 145116899 . + . gene_id "HERVH_3q24c"; transcript_id "HERVH_3q24c"; locus "HERVH_3q24c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0296"; model_cov "3516"; model_pct "45.6"; chr3 rmsk exon 145113191 145113470 2117 + . gene_id "HERVH_3q24c"; transcript_id "HERVH_3q24c"; locus "HERVH_3q24c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0296"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "165"; chr3 rmsk exon 145113473 145116387 15609 + . gene_id "HERVH_3q24c"; transcript_id "HERVH_3q24c"; locus "HERVH_3q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0296"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 145116382 145116524 787 + . gene_id "HERVH_3q24c"; transcript_id "HERVH_3q24c"; locus "HERVH_3q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0296"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr3 rmsk exon 145116516 145116899 2400 + . gene_id "HERVH_3q24c"; transcript_id "HERVH_3q24c"; locus "HERVH_3q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0296"; repClass "LTR"; repEnd "3873"; repFamily "ERV1"; repLeft "-3840"; repStart "3491"; ### ERV316A3_3q24c ### chr3 rmsk gene 145201382 145202620 . - . gene_id "ERV316A3_3q24c"; transcript_id "ERV316A3_3q24c"; locus "ERV316A3_3q24c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0562"; model_cov "1019"; model_pct "19.5"; chr3 rmsk exon 145201382 145202327 1024 - . gene_id "ERV316A3_3q24c"; transcript_id "ERV316A3_3q24c"; locus "ERV316A3_3q24c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0562"; repClass "LTR"; repEnd "5128"; repFamily "ERVL"; repLeft "4178"; repStart "-98"; chr3 rmsk exon 145202548 145202620 253 - . gene_id "ERV316A3_3q24c"; transcript_id "ERV316A3_3q24c"; locus "ERV316A3_3q24c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0562"; repClass "LTR"; repEnd "1666"; repFamily "ERVL"; repLeft "1597"; repStart "-3560"; ### HERVL_3q24d ### chr3 rmsk gene 145229481 145231003 . - . gene_id "HERVL_3q24d"; transcript_id "HERVL_3q24d"; locus "HERVL_3q24d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0301"; model_cov "1039"; model_pct "18.4"; chr3 rmsk exon 145229481 145229532 402 - . gene_id "HERVL_3q24d"; transcript_id "HERVL_3q24d"; locus "HERVL_3q24d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0301"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "392"; repStart "0"; chr3 rmsk exon 145229536 145230578 7599 - . gene_id "HERVL_3q24d"; transcript_id "HERVL_3q24d"; locus "HERVL_3q24d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0301"; repClass "LTR"; repEnd "1106"; repFamily "ERVL"; repLeft "67"; repStart "-4548"; chr3 rmsk exon 145230597 145231003 3011 - . gene_id "HERVL_3q24d"; transcript_id "HERVL_3q24d"; locus "HERVL_3q24d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0301"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; ### MER61_3q24b ### chr3 rmsk gene 145244231 145246521 . - . gene_id "MER61_3q24b"; transcript_id "MER61_3q24b"; locus "MER61_3q24b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0097"; model_cov "1747"; model_pct "33.5"; chr3 rmsk exon 145244231 145244606 1901 - . gene_id "MER61_3q24b"; transcript_id "MER61_3q24b"; locus "MER61_3q24b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0097"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "114"; repStart "0"; chr3 rmsk exon 145244648 145245395 2374 - . gene_id "MER61_3q24b"; transcript_id "MER61_3q24b"; locus "MER61_3q24b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0097"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4428"; repStart "0"; chr3 rmsk exon 145245553 145246521 5543 - . gene_id "MER61_3q24b"; transcript_id "MER61_3q24b"; locus "MER61_3q24b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0097"; repClass "LTR"; repEnd "2941"; repFamily "ERV1"; repLeft "1983"; repStart "-2276"; ### LTR25_3q24b ### chr3 rmsk gene 145245399 145247138 . - . gene_id "LTR25_3q24b"; transcript_id "LTR25_3q24b"; locus "LTR25_3q24b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0029"; model_cov "742"; model_pct "10.3"; chr3 rmsk exon 145245399 145245552 855 - . gene_id "LTR25_3q24b"; transcript_id "LTR25_3q24b"; locus "LTR25_3q24b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0029"; repClass "LTR"; repEnd "6493"; repFamily "ERV1"; repLeft "6356"; repStart "-695"; chr3 rmsk exon 145246501 145247138 2691 - . gene_id "LTR25_3q24b"; transcript_id "LTR25_3q24b"; locus "LTR25_3q24b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0029"; repClass "LTR"; repEnd "4413"; repFamily "ERV1"; repLeft "3808"; repStart "-2775"; ### HERVIP10FH_3q24 ### chr3 rmsk gene 145357009 145358085 . - . gene_id "HERVIP10FH_3q24"; transcript_id "HERVIP10FH_3q24"; locus "HERVIP10FH_3q24"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0043"; model_cov "600"; model_pct "11.8"; chr3 rmsk exon 145357009 145357590 1600 - . gene_id "HERVIP10FH_3q24"; transcript_id "HERVIP10FH_3q24"; locus "HERVIP10FH_3q24"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0043"; repClass "LTR"; repEnd "-2034"; repFamily "ERV1"; repLeft "-2634"; repStart "-7136"; chr3 rmsk exon 145357591 145358085 3022 - . gene_id "HERVIP10FH_3q24"; transcript_id "HERVIP10FH_3q24"; locus "HERVIP10FH_3q24"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10FH-int_0043"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3q24h ### chr3 rmsk gene 145514661 145518320 . + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; category "insert*"; intModel "HERVL-int"; locid "HERVL-int_0302"; model_cov "2372"; model_pct "42.0"; chr3 rmsk exon 145514661 145516374 11898 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0302"; repClass "LTR"; repEnd "2615"; repFamily "ERVL"; repLeft "-3039"; repStart "835"; chr3 rmsk exon 145516383 145516733 2435 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0302"; repClass "LTR"; repEnd "3356"; repFamily "ERVL"; repLeft "-2298"; repStart "3011"; chr3 rmsk exon 145516911 145517004 682 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0302"; prev_strand "-"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "3"; repStart "-357"; chr3 rmsk exon 145517007 145517703 5512 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0302"; prev_strand "-"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4957"; repStart "0"; chr3 rmsk exon 145517703 145517950 1988 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0302"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "-703"; repStart "4704"; chr3 rmsk exon 145517951 145518063 824 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0302"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "-183"; repStart "158"; chr3 rmsk exon 145518271 145518320 317 + . gene_id "HERVL_3q24h"; transcript_id "HERVL_3q24h"; locus "HERVL_3q24h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0302"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "400"; ### HERVH_3q24d ### chr3 rmsk gene 145551229 145556922 . - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0297"; model_cov "5058"; model_pct "65.6"; chr3 rmsk exon 145551229 145551637 2696 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 145551638 145552005 2187 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 145552004 145552219 1382 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 145552224 145552882 4400 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr3 rmsk exon 145552885 145553381 3352 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 145553372 145556510 19440 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr3 rmsk exon 145556513 145556922 2557 - . gene_id "HERVH_3q24d"; transcript_id "HERVH_3q24d"; locus "HERVH_3q24d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0297"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFRD_3q24 ### chr3 rmsk gene 145572604 145579848 . - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0043"; model_cov "4876"; model_pct "67.7"; chr3 rmsk exon 145572604 145573294 3744 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0043"; repClass "LTR"; repEnd "723"; repFamily "ERV1"; repLeft "17"; repStart "-11"; chr3 rmsk exon 145573307 145575738 14674 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0043"; repClass "LTR"; repEnd "7205"; repFamily "ERV1"; repLeft "4752"; repStart "0"; chr3 rmsk exon 145577093 145577304 866 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0043"; repClass "LTR"; repEnd "6207"; repFamily "ERV1"; repLeft "5875"; repStart "-998"; chr3 rmsk exon 145577302 145577366 370 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0043"; repClass "LTR"; repEnd "3812"; repFamily "ERV1"; repLeft "3733"; repStart "-3393"; chr3 rmsk exon 145577361 145577554 914 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0043"; repClass "LTR"; repEnd "3492"; repFamily "ERV1"; repLeft "3328"; repStart "-3713"; chr3 rmsk exon 145577551 145579311 6578 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0043"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "1"; repStart "-5356"; chr3 rmsk exon 145579342 145579848 2920 - . gene_id "HERVFRD_3q24"; transcript_id "HERVFRD_3q24"; locus "HERVFRD_3q24"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0043"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "1"; repStart "-204"; ### ERVLE_3q24b ### chr3 rmsk gene 145622612 145625150 . + . gene_id "ERVLE_3q24b"; transcript_id "ERVLE_3q24b"; locus "ERVLE_3q24b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0846"; model_cov "1727"; model_pct "30.5"; chr3 rmsk exon 145622612 145622869 653 + . gene_id "ERVLE_3q24b"; transcript_id "ERVLE_3q24b"; locus "ERVLE_3q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0846"; repClass "LTR"; repEnd "3304"; repFamily "ERVL"; repLeft "-2363"; repStart "3045"; chr3 rmsk exon 145623174 145623523 653 + . gene_id "ERVLE_3q24b"; transcript_id "ERVLE_3q24b"; locus "ERVLE_3q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0846"; repClass "LTR"; repEnd "3695"; repFamily "ERVL"; repLeft "-1972"; repStart "3305"; chr3 rmsk exon 145623552 145624326 1347 + . gene_id "ERVLE_3q24b"; transcript_id "ERVLE_3q24b"; locus "ERVLE_3q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0846"; repClass "LTR"; repEnd "4581"; repFamily "ERVL"; repLeft "-1086"; repStart "3763"; chr3 rmsk exon 145624904 145625150 368 + . gene_id "ERVLE_3q24b"; transcript_id "ERVLE_3q24b"; locus "ERVLE_3q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0846"; repClass "LTR"; repEnd "5065"; repFamily "ERVL"; repLeft "-602"; repStart "4805"; ### ERVLB4_3q24c ### chr3 rmsk gene 145668001 145670471 . + . gene_id "ERVLB4_3q24c"; transcript_id "ERVLB4_3q24c"; locus "ERVLB4_3q24c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0370"; model_cov "2133"; model_pct "37.3"; chr3 rmsk exon 145668001 145670064 9301 + . gene_id "ERVLB4_3q24c"; transcript_id "ERVLB4_3q24c"; locus "ERVLB4_3q24c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0370"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "3579"; chr3 rmsk exon 145670066 145670471 1223 + . gene_id "ERVLB4_3q24c"; transcript_id "ERVLB4_3q24c"; locus "ERVLB4_3q24c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0370"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HERVH_3q24e ### chr3 rmsk gene 145710495 145716095 . + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0298"; model_cov "4906"; model_pct "63.6"; chr3 rmsk exon 145710495 145710846 2055 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 145710849 145713799 19851 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 145713794 145713941 883 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 145713932 145714434 3302 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 145714437 145715099 4396 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 145715101 145715316 1320 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 145715317 145715692 2368 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 145715693 145716095 2698 + . gene_id "HERVH_3q24e"; transcript_id "HERVH_3q24e"; locus "HERVH_3q24e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0298"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### PABLB_3q24a ### chr3 rmsk gene 145748363 145749833 . + . gene_id "PABLB_3q24a"; transcript_id "PABLB_3q24a"; locus "PABLB_3q24a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0023"; model_cov "1451"; model_pct "20.4"; chr3 rmsk exon 145748363 145749833 2397 + . gene_id "PABLB_3q24a"; transcript_id "PABLB_3q24a"; locus "PABLB_3q24a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0023"; repClass "LTR"; repEnd "1904"; repFamily "ERV1"; repLeft "-5218"; repStart "453"; ### PABLB_3q24b ### chr3 rmsk gene 145750080 145754461 . + . gene_id "PABLB_3q24b"; transcript_id "PABLB_3q24b"; locus "PABLB_3q24b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0024"; model_cov "2907"; model_pct "40.8"; chr3 rmsk exon 145750080 145750240 311 + . gene_id "PABLB_3q24b"; transcript_id "PABLB_3q24b"; locus "PABLB_3q24b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0024"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-5760"; repStart "1201"; chr3 rmsk exon 145750700 145752436 2505 + . gene_id "PABLB_3q24b"; transcript_id "PABLB_3q24b"; locus "PABLB_3q24b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0024"; repClass "LTR"; repEnd "3406"; repFamily "ERV1"; repLeft "-3716"; repStart "1205"; chr3 rmsk exon 145752665 145753113 863 + . gene_id "PABLB_3q24b"; transcript_id "PABLB_3q24b"; locus "PABLB_3q24b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0024"; repClass "LTR"; repEnd "5063"; repFamily "ERV1"; repLeft "-2059"; repStart "4674"; chr3 rmsk exon 145754305 145754461 346 + . gene_id "PABLB_3q24b"; transcript_id "PABLB_3q24b"; locus "PABLB_3q24b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0024"; repClass "LTR"; repEnd "6697"; repFamily "ERV1"; repLeft "-425"; repStart "6541"; ### HERVP71A_3q24 ### chr3 rmsk gene 146333468 146339816 . + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0019"; model_cov "4739"; model_pct "62.4"; chr3 rmsk exon 146333468 146333944 3209 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 146333945 146335563 11296 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "1644"; repFamily "ERV1"; repLeft "-5946"; repStart "1"; chr3 rmsk exon 146335701 146336394 5219 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "5194"; repFamily "ERV1"; repLeft "-2396"; repStart "4495"; chr3 rmsk exon 146336454 146336540 7782 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "5270"; repFamily "ERV1"; repLeft "-2320"; repStart "5183"; chr3 rmsk exon 146336596 146337555 7782 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "6252"; repFamily "ERV1"; repLeft "-1338"; repStart "5271"; chr3 rmsk exon 146337918 146338070 7782 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "-1195"; repStart "6253"; chr3 rmsk exon 146338166 146339351 8429 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "7579"; repFamily "ERV1"; repLeft "-11"; repStart "6392"; chr3 rmsk exon 146339363 146339816 3157 + . gene_id "HERVP71A_3q24"; transcript_id "HERVP71A_3q24"; locus "HERVP71A_3q24"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0019"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3q24f ### chr3 rmsk gene 146353817 146359463 . + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0299"; model_cov "5107"; model_pct "66.2"; chr3 rmsk exon 146353817 146354226 2711 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr3 rmsk exon 146354229 146356953 13758 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "1"; chr3 rmsk exon 146356950 146357807 5267 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "-3719"; repStart "3140"; chr3 rmsk exon 146357809 146358471 4089 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 146358473 146358688 1417 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 146358689 146359062 2243 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 146359063 146359463 2574 + . gene_id "HERVH_3q24f"; transcript_id "HERVH_3q24f"; locus "HERVH_3q24f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0299"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_3q24g ### chr3 rmsk gene 146362086 146367972 . + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0300"; model_cov "5109"; model_pct "66.2"; chr3 rmsk exon 146362086 146362495 2695 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 146362498 146365460 18955 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 146365455 146366307 5563 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "-3719"; repStart "3140"; chr3 rmsk exon 146366309 146366971 4195 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 146366973 146367189 1315 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 146367190 146367565 2103 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 146367566 146367972 2670 + . gene_id "HERVH_3q24g"; transcript_id "HERVH_3q24g"; locus "HERVH_3q24g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0300"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER101_3q24 ### chr3 rmsk gene 146384194 146386388 . + . gene_id "MER101_3q24"; transcript_id "MER101_3q24"; locus "MER101_3q24"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0104"; model_cov "1993"; model_pct "30.0"; chr3 rmsk exon 146384194 146385519 2546 + . gene_id "MER101_3q24"; transcript_id "MER101_3q24"; locus "MER101_3q24"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0104"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3077"; chr3 rmsk exon 146385493 146385954 1873 + . gene_id "MER101_3q24"; transcript_id "MER101_3q24"; locus "MER101_3q24"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0104"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6171"; chr3 rmsk exon 146385955 146386388 2294 + . gene_id "MER101_3q24"; transcript_id "MER101_3q24"; locus "MER101_3q24"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0104"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVS71_3q24 ### chr3 rmsk gene 146405006 146412157 . - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0010"; model_cov "6125"; model_pct "68.2"; chr3 rmsk exon 146405006 146405562 4581 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 146405563 146405872 2102 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8600"; repStart "-69"; chr3 rmsk exon 146405879 146407586 12206 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "6070"; repStart "-1192"; chr3 rmsk exon 146407586 146408427 5780 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "5673"; repFamily "ERV1"; repLeft "4805"; repStart "-3305"; chr3 rmsk exon 146408412 146411603 23032 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr3 rmsk exon 146411606 146412157 4448 - . gene_id "HERVS71_3q24"; transcript_id "HERVS71_3q24"; locus "HERVS71_3q24"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0010"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3q24d ### chr3 rmsk gene 146630884 146633899 . - . gene_id "ERV316A3_3q24d"; transcript_id "ERV316A3_3q24d"; locus "ERV316A3_3q24d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0564"; model_cov "1674"; model_pct "32.0"; chr3 rmsk exon 146630884 146631262 951 - . gene_id "ERV316A3_3q24d"; transcript_id "ERV316A3_3q24d"; locus "ERV316A3_3q24d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0564"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 146631345 146632396 1920 - . gene_id "ERV316A3_3q24d"; transcript_id "ERV316A3_3q24d"; locus "ERV316A3_3q24d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0564"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "3803"; repStart "-391"; chr3 rmsk exon 146633279 146633899 1842 - . gene_id "ERV316A3_3q24d"; transcript_id "ERV316A3_3q24d"; locus "ERV316A3_3q24d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0564"; repClass "LTR"; repEnd "4047"; repFamily "ERVL"; repLeft "3405"; repStart "-1179"; ### ERVLB4_3q24d ### chr3 rmsk gene 146692728 146698104 . - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0371"; model_cov "4735"; model_pct "82.9"; chr3 rmsk exon 146692728 146692920 1004 - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0371"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-4"; repStart "-327"; chr3 rmsk exon 146692922 146693352 2173 - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0371"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "5273"; repStart "-3"; chr3 rmsk exon 146693355 146694350 5795 - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0371"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "3935"; repStart "-781"; chr3 rmsk exon 146694342 146697606 16633 - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0371"; repClass "LTR"; repEnd "3300"; repFamily "ERVL"; repLeft "1"; repStart "-2414"; chr3 rmsk exon 146697607 146698104 2186 - . gene_id "ERVLB4_3q24d"; transcript_id "ERVLB4_3q24d"; locus "ERVLB4_3q24d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0371"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### ERVLE_3q24c ### chr3 rmsk gene 146904366 146905980 . - . gene_id "ERVLE_3q24c"; transcript_id "ERVLE_3q24c"; locus "ERVLE_3q24c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0847"; model_cov "1347"; model_pct "23.8"; chr3 rmsk exon 146904366 146904576 549 - . gene_id "ERVLE_3q24c"; transcript_id "ERVLE_3q24c"; locus "ERVLE_3q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0847"; repClass "LTR"; repEnd "5647"; repFamily "ERVL"; repLeft "5446"; repStart "-20"; chr3 rmsk exon 146904669 146904799 329 - . gene_id "ERVLE_3q24c"; transcript_id "ERVLE_3q24c"; locus "ERVLE_3q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0847"; repClass "LTR"; repEnd "5318"; repFamily "ERVL"; repLeft "5190"; repStart "-349"; chr3 rmsk exon 146905003 146905980 1468 - . gene_id "ERVLE_3q24c"; transcript_id "ERVLE_3q24c"; locus "ERVLE_3q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0847"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "3903"; repStart "-746"; ### HERVL_3q24e ### chr3 rmsk gene 146936983 146940451 . + . gene_id "HERVL_3q24e"; transcript_id "HERVL_3q24e"; locus "HERVL_3q24e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0304"; model_cov "2504"; model_pct "44.3"; chr3 rmsk exon 146936983 146937445 3024 + . gene_id "HERVL_3q24e"; transcript_id "HERVL_3q24e"; locus "HERVL_3q24e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0304"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 146937446 146938591 18250 + . gene_id "HERVL_3q24e"; transcript_id "HERVL_3q24e"; locus "HERVL_3q24e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0304"; repClass "LTR"; repEnd "1178"; repFamily "ERVL"; repLeft "-4476"; repStart "1"; chr3 rmsk exon 146938889 146940199 18250 + . gene_id "HERVL_3q24e"; transcript_id "HERVL_3q24e"; locus "HERVL_3q24e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0304"; repClass "LTR"; repEnd "2506"; repFamily "ERVL"; repLeft "-3148"; repStart "1179"; chr3 rmsk exon 146940370 146940451 310 + . gene_id "HERVL_3q24e"; transcript_id "HERVL_3q24e"; locus "HERVL_3q24e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0304"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "369"; ### ERVLB4_3q24e ### chr3 rmsk gene 146969535 146972175 . + . gene_id "ERVLB4_3q24e"; transcript_id "ERVLB4_3q24e"; locus "ERVLB4_3q24e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0372"; model_cov "1887"; model_pct "33.0"; chr3 rmsk exon 146969535 146970434 7831 + . gene_id "ERVLB4_3q24e"; transcript_id "ERVLB4_3q24e"; locus "ERVLB4_3q24e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0372"; repClass "LTR"; repEnd "4727"; repFamily "ERVL"; repLeft "-987"; repStart "3825"; chr3 rmsk exon 146971093 146972058 7831 + . gene_id "ERVLB4_3q24e"; transcript_id "ERVLB4_3q24e"; locus "ERVLB4_3q24e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0372"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4728"; chr3 rmsk exon 146972059 146972175 476 + . gene_id "ERVLB4_3q24e"; transcript_id "ERVLB4_3q24e"; locus "ERVLB4_3q24e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0372"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-273"; repStart "1"; ### ERVL_3q24 ### chr3 rmsk gene 146979471 146980933 . - . gene_id "ERVL_3q24"; transcript_id "ERVL_3q24"; locus "ERVL_3q24"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0088"; model_cov "1315"; model_pct "22.8"; chr3 rmsk exon 146979471 146980277 1212 - . gene_id "ERVL_3q24"; transcript_id "ERVL_3q24"; locus "ERVL_3q24"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0088"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "4296"; repStart "-583"; chr3 rmsk exon 146980379 146980535 613 - . gene_id "ERVL_3q24"; transcript_id "ERVL_3q24"; locus "ERVL_3q24"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0088"; repClass "LTR"; repEnd "3947"; repFamily "ERVL"; repLeft "3791"; repStart "-1810"; chr3 rmsk exon 146980641 146980933 947 - . gene_id "ERVL_3q24"; transcript_id "ERVL_3q24"; locus "ERVL_3q24"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0088"; repClass "LTR"; repEnd "3785"; repFamily "ERVL"; repLeft "3504"; repStart "-1972"; ### HERVL_3q24f ### chr3 rmsk gene 147719506 147725815 . + . gene_id "HERVL_3q24f"; transcript_id "HERVL_3q24f"; locus "HERVL_3q24f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0305"; model_cov "5651"; model_pct "99.9"; chr3 rmsk exon 147719506 147719933 2889 + . gene_id "HERVL_3q24f"; transcript_id "HERVL_3q24f"; locus "HERVL_3q24f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0305"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 147719934 147725141 31886 + . gene_id "HERVL_3q24f"; transcript_id "HERVL_3q24f"; locus "HERVL_3q24f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0305"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-436"; repStart "1"; chr3 rmsk exon 147725168 147725588 31886 + . gene_id "HERVL_3q24f"; transcript_id "HERVL_3q24f"; locus "HERVL_3q24f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0305"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5219"; chr3 rmsk exon 147725591 147725815 1431 + . gene_id "HERVL_3q24f"; transcript_id "HERVL_3q24f"; locus "HERVL_3q24f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0305"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-211"; repStart "3"; ### HERVL_3q24g ### chr3 rmsk gene 148128358 148135351 . + . gene_id "HERVL_3q24g"; transcript_id "HERVL_3q24g"; locus "HERVL_3q24g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0306"; model_cov "5652"; model_pct "100.0"; chr3 rmsk exon 148128358 148128911 1975 + . gene_id "HERVL_3q24g"; transcript_id "HERVL_3q24g"; locus "HERVL_3q24g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0306"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr3 rmsk exon 148128912 148133365 40166 + . gene_id "HERVL_3q24g"; transcript_id "HERVL_3q24g"; locus "HERVL_3q24g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0306"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "-1135"; repStart "1"; chr3 rmsk exon 148133677 148134806 40166 + . gene_id "HERVL_3q24g"; transcript_id "HERVL_3q24g"; locus "HERVL_3q24g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0306"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4520"; chr3 rmsk exon 148134807 148135351 1997 + . gene_id "HERVL_3q24g"; transcript_id "HERVL_3q24g"; locus "HERVL_3q24g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0306"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVH_3q24h ### chr3 rmsk gene 148151529 148157361 . + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0301"; model_cov "4912"; model_pct "63.7"; chr3 rmsk exon 148151529 148151957 3290 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 148151960 148155053 16273 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 148155048 148155195 822 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 148155186 148155688 3578 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 148155691 148156352 4116 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 148156350 148156556 1172 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr3 rmsk exon 148156554 148156931 2445 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7321"; chr3 rmsk exon 148156932 148157361 3298 + . gene_id "HERVH_3q24h"; transcript_id "HERVH_3q24h"; locus "HERVH_3q24h"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0301"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q24d ### chr3 rmsk gene 148278809 148281792 . + . gene_id "ERVLE_3q24d"; transcript_id "ERVLE_3q24d"; locus "ERVLE_3q24d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0849"; model_cov "1059"; model_pct "18.7"; chr3 rmsk exon 148278809 148279076 435 + . gene_id "ERVLE_3q24d"; transcript_id "ERVLE_3q24d"; locus "ERVLE_3q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0849"; repClass "LTR"; repEnd "1463"; repFamily "ERVL"; repLeft "-4204"; repStart "1193"; chr3 rmsk exon 148279064 148279432 421 + . gene_id "ERVLE_3q24d"; transcript_id "ERVLE_3q24d"; locus "ERVLE_3q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0849"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1035"; repStart "4269"; chr3 rmsk exon 148281082 148281370 561 + . gene_id "ERVLE_3q24d"; transcript_id "ERVLE_3q24d"; locus "ERVLE_3q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0849"; repClass "LTR"; repEnd "5021"; repFamily "ERVL"; repLeft "-646"; repStart "4704"; chr3 rmsk exon 148281684 148281792 275 + . gene_id "ERVLE_3q24d"; transcript_id "ERVLE_3q24d"; locus "ERVLE_3q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0849"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "-370"; repStart "5188"; ### HERVH_3q24i ### chr3 rmsk gene 148414244 148420096 . + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0302"; model_cov "5061"; model_pct "65.6"; chr3 rmsk exon 148414244 148414694 3446 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 148414697 148417895 20358 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr3 rmsk exon 148417886 148418387 3345 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 148418390 148419051 4429 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 148419053 148419267 1352 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 148419266 148419645 2530 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 148419646 148420096 3340 + . gene_id "HERVH_3q24i"; transcript_id "HERVH_3q24i"; locus "HERVH_3q24i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0302"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q24e ### chr3 rmsk gene 148470359 148473886 . - . gene_id "ERVLE_3q24e"; transcript_id "ERVLE_3q24e"; locus "ERVLE_3q24e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0850"; model_cov "3126"; model_pct "55.2"; chr3 rmsk exon 148470359 148470670 523 - . gene_id "ERVLE_3q24e"; transcript_id "ERVLE_3q24e"; locus "ERVLE_3q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0850"; repClass "LTR"; repEnd "5260"; repFamily "ERVL"; repLeft "4949"; repStart "-407"; chr3 rmsk exon 148470974 148471555 1042 - . gene_id "ERVLE_3q24e"; transcript_id "ERVLE_3q24e"; locus "ERVLE_3q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0850"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "4228"; repStart "-843"; chr3 rmsk exon 148471574 148472355 1527 - . gene_id "ERVLE_3q24e"; transcript_id "ERVLE_3q24e"; locus "ERVLE_3q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0850"; repClass "LTR"; repEnd "3880"; repFamily "ERVL"; repLeft "3102"; repStart "-1787"; chr3 rmsk exon 148472499 148473886 2260 - . gene_id "ERVLE_3q24e"; transcript_id "ERVLE_3q24e"; locus "ERVLE_3q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0850"; repClass "LTR"; repEnd "3038"; repFamily "ERVL"; repLeft "1597"; repStart "-2629"; ### HML2_3q24 ### chr3 rmsk gene 148563690 148567609 . - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0028"; model_cov "3918"; model_pct "52.0"; chr3 rmsk exon 148563690 148567609 35394 - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0028"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "1"; repStart "-3617"; ### ERVLE_3q24f ### chr3 rmsk gene 148600713 148601910 . - . gene_id "ERVLE_3q24f"; transcript_id "ERVLE_3q24f"; locus "ERVLE_3q24f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0851"; model_cov "1408"; model_pct "24.8"; chr3 rmsk exon 148600713 148601910 1846 - . gene_id "ERVLE_3q24f"; transcript_id "ERVLE_3q24f"; locus "ERVLE_3q24f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0851"; repClass "LTR"; repEnd "4903"; repFamily "ERVL"; repLeft "3495"; repStart "-764"; ### ERVLE_3q24g ### chr3 rmsk gene 148663228 148664136 . + . gene_id "ERVLE_3q24g"; transcript_id "ERVLE_3q24g"; locus "ERVLE_3q24g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0852"; model_cov "946"; model_pct "16.7"; chr3 rmsk exon 148663228 148663881 1580 + . gene_id "ERVLE_3q24g"; transcript_id "ERVLE_3q24g"; locus "ERVLE_3q24g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0852"; repClass "LTR"; repEnd "2392"; repFamily "ERVL"; repLeft "-3275"; repStart "1712"; chr3 rmsk exon 148663874 148664136 1009 + . gene_id "ERVLE_3q24g"; transcript_id "ERVLE_3q24g"; locus "ERVLE_3q24g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0852"; repClass "LTR"; repEnd "3434"; repFamily "ERVL"; repLeft "-2233"; repStart "3168"; ### MER34B_3q24 ### chr3 rmsk gene 148805152 148809414 . - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0082"; model_cov "3285"; model_pct "61.3"; chr3 rmsk exon 148805152 148805432 5775 - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0082"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "2987"; repStart "-2072"; chr3 rmsk exon 148805708 148807377 5775 - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0082"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "1192"; repStart "-2370"; chr3 rmsk exon 148807459 148807642 732 - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0082"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "923"; repStart "-4245"; chr3 rmsk exon 148807630 148808882 1457 - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0082"; repClass "LTR"; repEnd "-1843"; repFamily "ERV1"; repLeft "-2849"; repStart "-7199"; chr3 rmsk exon 148808884 148809414 3079 - . gene_id "MER34B_3q24"; transcript_id "MER34B_3q24"; locus "MER34B_3q24"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0082"; repClass "LTR"; repEnd "536"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### HUERSP2_3q25.1 ### chr3 rmsk gene 149294612 149294927 . + . gene_id "HUERSP2_3q25.1"; transcript_id "HUERSP2_3q25.1"; locus "HUERSP2_3q25.1"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0032"; model_cov "319"; model_pct "10.3"; chr3 rmsk exon 149294612 149294927 2134 + . gene_id "HUERSP2_3q25.1"; transcript_id "HUERSP2_3q25.1"; locus "HUERSP2_3q25.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0032"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2767"; ### HERVW_3q25.1a ### chr3 rmsk gene 149756462 149758825 . - . gene_id "HERVW_3q25.1a"; transcript_id "HERVW_3q25.1a"; locus "HERVW_3q25.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0075"; model_cov "2010"; model_pct "23.3"; chr3 rmsk exon 149756462 149756786 2638 - . gene_id "HERVW_3q25.1a"; transcript_id "HERVW_3q25.1a"; locus "HERVW_3q25.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0075"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr3 rmsk exon 149756787 149757089 2336 - . gene_id "HERVW_3q25.1a"; transcript_id "HERVW_3q25.1a"; locus "HERVW_3q25.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0075"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 149757101 149758825 13879 - . gene_id "HERVW_3q25.1a"; transcript_id "HERVW_3q25.1a"; locus "HERVW_3q25.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0075"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4300"; repStart "-2607"; ### ERVLE_3q25.1 ### chr3 rmsk gene 150223745 150225292 . + . gene_id "ERVLE_3q25.1"; transcript_id "ERVLE_3q25.1"; locus "ERVLE_3q25.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0854"; model_cov "1572"; model_pct "27.7"; chr3 rmsk exon 150223745 150224485 773 + . gene_id "ERVLE_3q25.1"; transcript_id "ERVLE_3q25.1"; locus "ERVLE_3q25.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0854"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "-4654"; repStart "143"; chr3 rmsk exon 150224605 150225292 1309 + . gene_id "ERVLE_3q25.1"; transcript_id "ERVLE_3q25.1"; locus "ERVLE_3q25.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0854"; repClass "LTR"; repEnd "2060"; repFamily "ERVL"; repLeft "-3607"; repStart "1358"; ### HERVH_3q25.1 ### chr3 rmsk gene 150600789 150602459 . + . gene_id "HERVH_3q25.1"; transcript_id "HERVH_3q25.1"; locus "HERVH_3q25.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0303"; model_cov "1225"; model_pct "15.9"; chr3 rmsk exon 150600789 150601449 4356 + . gene_id "HERVH_3q25.1"; transcript_id "HERVH_3q25.1"; locus "HERVH_3q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0303"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "-2879"; repStart "4165"; chr3 rmsk exon 150601457 150602021 3543 + . gene_id "HERVH_3q25.1"; transcript_id "HERVH_3q25.1"; locus "HERVH_3q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0303"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr3 rmsk exon 150602022 150602459 3391 + . gene_id "HERVH_3q25.1"; transcript_id "HERVH_3q25.1"; locus "HERVH_3q25.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0303"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_3q25.1a ### chr3 rmsk gene 150688528 150694767 . + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0161"; model_cov "5203"; model_pct "78.9"; chr3 rmsk exon 150688528 150688992 3518 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0161"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 150688996 150689283 1724 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0161"; repClass "LTR"; repEnd "314"; repFamily "ERV1"; repLeft "-6284"; repStart "1"; chr3 rmsk exon 150689339 150690905 8525 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0161"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "865"; chr3 rmsk exon 150691146 150691681 2419 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0161"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-3268"; repStart "2737"; chr3 rmsk exon 150691674 150694240 15311 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0161"; repClass "LTR"; repEnd "6585"; repFamily "ERV1"; repLeft "-13"; repStart "3918"; chr3 rmsk exon 150694320 150694767 2757 + . gene_id "MER4_3q25.1a"; transcript_id "MER4_3q25.1a"; locus "MER4_3q25.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0161"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "8"; ### HERVL18_3q25.1 ### chr3 rmsk gene 150825377 150827397 . - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0036"; model_cov "1125"; model_pct "18.6"; chr3 rmsk exon 150825377 150825710 1639 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "269"; repStart "0"; chr3 rmsk exon 150825715 150825851 428 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "2306"; repFamily "ERVL"; repLeft "2119"; repStart "-3741"; chr3 rmsk exon 150825851 150826213 971 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1388"; repStart "-4237"; chr3 rmsk exon 150826201 150826247 269 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "962"; repFamily "ERVL"; repLeft "916"; repStart "-5085"; chr3 rmsk exon 150826242 150826413 931 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "493"; repStart "-5381"; chr3 rmsk exon 150826408 150826703 1698 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "298"; repFamily "ERVL"; repLeft "1"; repStart "-5749"; chr3 rmsk exon 150826740 150827397 2575 - . gene_id "HERVL18_3q25.1"; transcript_id "HERVL18_3q25.1"; locus "HERVL18_3q25.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0036"; repClass "LTR"; repEnd "583"; repFamily "ERVL"; repLeft "1"; repStart "-31"; ### HERVW_3q25.1b ### chr3 rmsk gene 150854256 150861337 . + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0076"; model_cov "6347"; model_pct "73.6"; chr3 rmsk exon 150854256 150854777 4173 + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0076"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr3 rmsk exon 150854778 150860697 49364 + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0076"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr3 rmsk exon 150860691 150860729 294 + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0076"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 150860720 150861011 2487 + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0076"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 150861012 150861337 2835 + . gene_id "HERVW_3q25.1b"; transcript_id "HERVW_3q25.1b"; locus "HERVW_3q25.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0076"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL_3q25.1 ### chr3 rmsk gene 151419191 151421384 . - . gene_id "HERVL_3q25.1"; transcript_id "HERVL_3q25.1"; locus "HERVL_3q25.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0307"; model_cov "1771"; model_pct "31.3"; chr3 rmsk exon 151419191 151419631 3449 - . gene_id "HERVL_3q25.1"; transcript_id "HERVL_3q25.1"; locus "HERVL_3q25.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0307"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 151419632 151421384 13952 - . gene_id "HERVL_3q25.1"; transcript_id "HERVL_3q25.1"; locus "HERVL_3q25.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0307"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3883"; repStart "0"; ### HERV9_3q25.1 ### chr3 rmsk gene 151664746 151671281 . - . gene_id "HERV9_3q25.1"; transcript_id "HERV9_3q25.1"; locus "HERV9_3q25.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0039"; model_cov "5189"; model_pct "61.5"; chr3 rmsk exon 151664746 151670461 28769 - . gene_id "HERV9_3q25.1"; transcript_id "HERV9_3q25.1"; locus "HERV9_3q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0039"; repClass "LTR"; repEnd "7508"; repFamily "ERV1"; repLeft "2319"; repStart "-928"; chr3 rmsk exon 151670462 151671281 6176 - . gene_id "HERV9_3q25.1"; transcript_id "HERV9_3q25.1"; locus "HERV9_3q25.1"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0039"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "370"; repStart "0"; ### HML3_3q25.1 ### chr3 rmsk gene 151701259 151706723 . + . gene_id "HML3_3q25.1"; transcript_id "HML3_3q25.1"; locus "HML3_3q25.1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0046"; model_cov "4964"; model_pct "82.4"; chr3 rmsk exon 151701259 151701786 3750 + . gene_id "HML3_3q25.1"; transcript_id "HML3_3q25.1"; locus "HML3_3q25.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0046"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 151701787 151702443 4879 + . gene_id "HML3_3q25.1"; transcript_id "HML3_3q25.1"; locus "HML3_3q25.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0046"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "1"; chr3 rmsk exon 151702444 151706723 34167 + . gene_id "HML3_3q25.1"; transcript_id "HML3_3q25.1"; locus "HML3_3q25.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0046"; repClass "LTR"; repEnd "5928"; repFamily "ERVK"; repLeft "-93"; repStart "1637"; ### HERVFH21_3q25.1 ### chr3 rmsk gene 151805801 151812286 . + . gene_id "HERVFH21_3q25.1"; transcript_id "HERVFH21_3q25.1"; locus "HERVFH21_3q25.1"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0009"; model_cov "5298"; model_pct "81.1"; chr3 rmsk exon 151805801 151806132 987 + . gene_id "HERVFH21_3q25.1"; transcript_id "HERVFH21_3q25.1"; locus "HERVFH21_3q25.1"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0009"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "83"; chr3 rmsk exon 151805946 151806142 1513 + . gene_id "HERVFH21_3q25.1"; transcript_id "HERVFH21_3q25.1"; locus "HERVFH21_3q25.1"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0009"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "-3"; repStart "301"; chr3 rmsk exon 151806184 151808619 17484 + . gene_id "HERVFH21_3q25.1"; transcript_id "HERVFH21_3q25.1"; locus "HERVFH21_3q25.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0009"; repClass "LTR"; repEnd "2422"; repFamily "ERV1"; repLeft "-4107"; repStart "62"; chr3 rmsk exon 151809493 151812286 17484 + . gene_id "HERVFH21_3q25.1"; transcript_id "HERVFH21_3q25.1"; locus "HERVFH21_3q25.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0009"; repClass "LTR"; repEnd "5331"; repFamily "ERV1"; repLeft "-1198"; repStart "2393"; ### MER4_3q25.1b ### chr3 rmsk gene 152034589 152040439 . - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0164"; model_cov "5486"; model_pct "83.1"; chr3 rmsk exon 152034589 152035041 2856 - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0164"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 152035043 152038630 16455 - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0164"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "2737"; repStart "0"; chr3 rmsk exon 152038849 152039540 3834 - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0164"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "1764"; repStart "-4113"; chr3 rmsk exon 152039557 152039804 1515 - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0164"; repClass "LTR"; repEnd "1020"; repFamily "ERV1"; repLeft "764"; repStart "-5578"; chr3 rmsk exon 152039826 152040439 2639 - . gene_id "MER4_3q25.1b"; transcript_id "MER4_3q25.1b"; locus "MER4_3q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0164"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "39"; repStart "-5911"; ### MER4_3q25.1c ### chr3 rmsk gene 152040473 152042012 . - . gene_id "MER4_3q25.1c"; transcript_id "MER4_3q25.1c"; locus "MER4_3q25.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0165"; model_cov "1078"; model_pct "16.3"; chr3 rmsk exon 152040473 152040823 1354 - . gene_id "MER4_3q25.1c"; transcript_id "MER4_3q25.1c"; locus "MER4_3q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0165"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "2119"; repStart "-4171"; chr3 rmsk exon 152040904 152040990 304 - . gene_id "MER4_3q25.1c"; transcript_id "MER4_3q25.1c"; locus "MER4_3q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0165"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-721"; repStart "-7235"; chr3 rmsk exon 152040978 152041551 2654 - . gene_id "MER4_3q25.1c"; transcript_id "MER4_3q25.1c"; locus "MER4_3q25.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0165"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "1"; repStart "-5911"; chr3 rmsk exon 152041555 152042012 3174 - . gene_id "MER4_3q25.1c"; transcript_id "MER4_3q25.1c"; locus "MER4_3q25.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0165"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3q25.2a ### chr3 rmsk gene 152597016 152603153 . + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0304"; model_cov "5269"; model_pct "68.3"; chr3 rmsk exon 152597016 152597424 2765 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 152597427 152601488 8291 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr3 rmsk exon 152601485 152602152 3970 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4480"; chr3 rmsk exon 152602154 152602369 1267 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 152602370 152602743 2073 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 152602744 152603153 2847 + . gene_id "HERVH_3q25.2a"; transcript_id "HERVH_3q25.2a"; locus "HERVH_3q25.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0304"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_3q25.2a ### chr3 rmsk gene 152685459 152686867 . - . gene_id "ERVLB4_3q25.2a"; transcript_id "ERVLB4_3q25.2a"; locus "ERVLB4_3q25.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0374"; model_cov "903"; model_pct "15.8"; chr3 rmsk exon 152685459 152685618 355 - . gene_id "ERVLB4_3q25.2a"; transcript_id "ERVLB4_3q25.2a"; locus "ERVLB4_3q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0374"; repClass "LTR"; repEnd "2147"; repFamily "ERVL"; repLeft "1985"; repStart "-3567"; chr3 rmsk exon 152685645 152686061 584 - . gene_id "ERVLB4_3q25.2a"; transcript_id "ERVLB4_3q25.2a"; locus "ERVLB4_3q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0374"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "1507"; repStart "-3782"; chr3 rmsk exon 152686247 152686344 317 - . gene_id "ERVLB4_3q25.2a"; transcript_id "ERVLB4_3q25.2a"; locus "ERVLB4_3q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0374"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "1119"; repStart "-4497"; chr3 rmsk exon 152686656 152686867 523 - . gene_id "ERVLB4_3q25.2a"; transcript_id "ERVLB4_3q25.2a"; locus "ERVLB4_3q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0374"; repClass "LTR"; repEnd "751"; repFamily "ERVL"; repLeft "533"; repStart "-4963"; ### HERVH_3q25.2b ### chr3 rmsk gene 153226150 153232523 . - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0305"; model_cov "5632"; model_pct "73.0"; chr3 rmsk exon 153226150 153226562 3159 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 153226563 153226938 2392 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 153226937 153227152 1334 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 153227154 153228883 8399 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr3 rmsk exon 153228874 153229023 979 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 153229018 153232108 19957 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 153232111 153232523 3118 - . gene_id "HERVH_3q25.2b"; transcript_id "HERVH_3q25.2b"; locus "HERVH_3q25.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0305"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_3q25.2a ### chr3 rmsk gene 153351906 153356709 . + . gene_id "ERV316A3_3q25.2a"; transcript_id "ERV316A3_3q25.2a"; locus "ERV316A3_3q25.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0566"; model_cov "4206"; model_pct "80.5"; chr3 rmsk exon 153351906 153352109 619 + . gene_id "ERV316A3_3q25.2a"; transcript_id "ERV316A3_3q25.2a"; locus "ERV316A3_3q25.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0566"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "232"; chr3 rmsk exon 153352120 153353570 2334 + . gene_id "ERV316A3_3q25.2a"; transcript_id "ERV316A3_3q25.2a"; locus "ERV316A3_3q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0566"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "-3650"; repStart "1"; chr3 rmsk exon 153354216 153354848 2334 + . gene_id "ERV316A3_3q25.2a"; transcript_id "ERV316A3_3q25.2a"; locus "ERV316A3_3q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0566"; repClass "LTR"; repEnd "2556"; repFamily "ERVL"; repLeft "-2670"; repStart "1807"; chr3 rmsk exon 153354852 153356709 3569 + . gene_id "ERV316A3_3q25.2a"; transcript_id "ERV316A3_3q25.2a"; locus "ERV316A3_3q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0566"; repClass "LTR"; repEnd "4877"; repFamily "ERVL"; repLeft "-349"; repStart "2995"; ### HERVL_3q25.2 ### chr3 rmsk gene 153472878 153474140 . + . gene_id "HERVL_3q25.2"; transcript_id "HERVL_3q25.2"; locus "HERVL_3q25.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0308"; model_cov "826"; model_pct "14.6"; chr3 rmsk exon 153472878 153473677 6097 + . gene_id "HERVL_3q25.2"; transcript_id "HERVL_3q25.2"; locus "HERVL_3q25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0308"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4828"; chr3 rmsk exon 153473678 153474140 2767 + . gene_id "HERVL_3q25.2"; transcript_id "HERVL_3q25.2"; locus "HERVL_3q25.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0308"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HERVH_3q25.2c ### chr3 rmsk gene 153825582 153829441 . - . gene_id "HERVH_3q25.2c"; transcript_id "HERVH_3q25.2c"; locus "HERVH_3q25.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0306"; model_cov "2994"; model_pct "38.8"; chr3 rmsk exon 153825582 153828978 7662 - . gene_id "HERVH_3q25.2c"; transcript_id "HERVH_3q25.2c"; locus "HERVH_3q25.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0306"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 153828979 153829441 3762 - . gene_id "HERVH_3q25.2c"; transcript_id "HERVH_3q25.2c"; locus "HERVH_3q25.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0306"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3q25.2b ### chr3 rmsk gene 153904617 153906476 . + . gene_id "ERV316A3_3q25.2b"; transcript_id "ERV316A3_3q25.2b"; locus "ERV316A3_3q25.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0567"; model_cov "1568"; model_pct "30.0"; chr3 rmsk exon 153904617 153904943 1118 + . gene_id "ERV316A3_3q25.2b"; transcript_id "ERV316A3_3q25.2b"; locus "ERV316A3_3q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0567"; repClass "LTR"; repEnd "943"; repFamily "ERVL"; repLeft "-4283"; repStart "614"; chr3 rmsk exon 153905351 153905934 1118 + . gene_id "ERV316A3_3q25.2b"; transcript_id "ERV316A3_3q25.2b"; locus "ERV316A3_3q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0567"; repClass "LTR"; repEnd "1340"; repFamily "ERVL"; repLeft "-3886"; repStart "714"; chr3 rmsk exon 153905972 153906476 847 + . gene_id "ERV316A3_3q25.2b"; transcript_id "ERV316A3_3q25.2b"; locus "ERV316A3_3q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0567"; repClass "LTR"; repEnd "2253"; repFamily "ERVL"; repLeft "-2973"; repStart "1640"; ### ERV316A3_3q25.2c ### chr3 rmsk gene 153906501 153909016 . + . gene_id "ERV316A3_3q25.2c"; transcript_id "ERV316A3_3q25.2c"; locus "ERV316A3_3q25.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0568"; model_cov "1568"; model_pct "30.0"; chr3 rmsk exon 153906501 153906747 375 + . gene_id "ERV316A3_3q25.2c"; transcript_id "ERV316A3_3q25.2c"; locus "ERV316A3_3q25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0568"; repClass "LTR"; repEnd "2196"; repFamily "ERVL"; repLeft "-3030"; repStart "1956"; chr3 rmsk exon 153907281 153908417 3335 + . gene_id "ERV316A3_3q25.2c"; transcript_id "ERV316A3_3q25.2c"; locus "ERV316A3_3q25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0568"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "-295"; repStart "3772"; chr3 rmsk exon 153908443 153908620 412 + . gene_id "ERV316A3_3q25.2c"; transcript_id "ERV316A3_3q25.2c"; locus "ERV316A3_3q25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0568"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "5053"; chr3 rmsk exon 153908648 153909016 982 + . gene_id "ERV316A3_3q25.2c"; transcript_id "ERV316A3_3q25.2c"; locus "ERV316A3_3q25.2c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0568"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "51"; ### HERV30_3q25.2 ### chr3 rmsk gene 154367104 154372532 . + . gene_id "HERV30_3q25.2"; transcript_id "HERV30_3q25.2"; locus "HERV30_3q25.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0004"; model_cov "4374"; model_pct "53.0"; chr3 rmsk exon 154367104 154367800 5130 + . gene_id "HERV30_3q25.2"; transcript_id "HERV30_3q25.2"; locus "HERV30_3q25.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0004"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 154367801 154371254 26023 + . gene_id "HERV30_3q25.2"; transcript_id "HERV30_3q25.2"; locus "HERV30_3q25.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0004"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "1"; chr3 rmsk exon 154371248 154372142 6318 + . gene_id "HERV30_3q25.2"; transcript_id "HERV30_3q25.2"; locus "HERV30_3q25.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0004"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr3 rmsk exon 154372143 154372532 2993 + . gene_id "HERV30_3q25.2"; transcript_id "HERV30_3q25.2"; locus "HERV30_3q25.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0004"; repClass "LTR"; repEnd "401"; repFamily "ERV1"; repLeft "-321"; repStart "1"; ### HERVW_3q25.2 ### chr3 rmsk gene 154978076 154979301 . + . gene_id "HERVW_3q25.2"; transcript_id "HERVW_3q25.2"; locus "HERVW_3q25.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0077"; model_cov "921"; model_pct "10.7"; chr3 rmsk exon 154978076 154978668 4968 + . gene_id "HERVW_3q25.2"; transcript_id "HERVW_3q25.2"; locus "HERVW_3q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0077"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5427"; chr3 rmsk exon 154978662 154978700 281 + . gene_id "HERVW_3q25.2"; transcript_id "HERVW_3q25.2"; locus "HERVW_3q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0077"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 154978691 154978983 2369 + . gene_id "HERVW_3q25.2"; transcript_id "HERVW_3q25.2"; locus "HERVW_3q25.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0077"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 154978984 154979301 2525 + . gene_id "HERVW_3q25.2"; transcript_id "HERVW_3q25.2"; locus "HERVW_3q25.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0077"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### LTR23_3q25.2 ### chr3 rmsk gene 155029552 155030580 . - . gene_id "LTR23_3q25.2"; transcript_id "LTR23_3q25.2"; locus "LTR23_3q25.2"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0025"; model_cov "764"; model_pct "14.9"; chr3 rmsk exon 155029552 155030580 2457 - . gene_id "LTR23_3q25.2"; transcript_id "LTR23_3q25.2"; locus "LTR23_3q25.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0025"; repClass "LTR"; repEnd "1605"; repFamily "ERV1"; repLeft "841"; repStart "-3518"; ### ERVLB4_3q25.2b ### chr3 rmsk gene 155245126 155247406 . + . gene_id "ERVLB4_3q25.2b"; transcript_id "ERVLB4_3q25.2b"; locus "ERVLB4_3q25.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0375"; model_cov "1734"; model_pct "30.3"; chr3 rmsk exon 155245126 155245668 2393 + . gene_id "ERVLB4_3q25.2b"; transcript_id "ERVLB4_3q25.2b"; locus "ERVLB4_3q25.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0375"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-58"; repStart "-36"; chr3 rmsk exon 155245707 155245757 2393 + . gene_id "ERVLB4_3q25.2b"; transcript_id "ERVLB4_3q25.2b"; locus "ERVLB4_3q25.2b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0375"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-1"; repStart "458"; chr3 rmsk exon 155245758 155246008 1216 + . gene_id "ERVLB4_3q25.2b"; transcript_id "ERVLB4_3q25.2b"; locus "ERVLB4_3q25.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0375"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "-5467"; repStart "1"; chr3 rmsk exon 155246035 155247406 27522 + . gene_id "ERVLB4_3q25.2b"; transcript_id "ERVLB4_3q25.2b"; locus "ERVLB4_3q25.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0375"; repClass "LTR"; repEnd "1962"; repFamily "ERVL"; repLeft "-3752"; repStart "474"; ### ERVLB4_3q25.2c ### chr3 rmsk gene 155250612 155254841 . + . gene_id "ERVLB4_3q25.2c"; transcript_id "ERVLB4_3q25.2c"; locus "ERVLB4_3q25.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0376"; model_cov "3751"; model_pct "65.6"; chr3 rmsk exon 155250612 155254306 27522 + . gene_id "ERVLB4_3q25.2c"; transcript_id "ERVLB4_3q25.2c"; locus "ERVLB4_3q25.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0376"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "1963"; chr3 rmsk exon 155254307 155254841 2433 + . gene_id "ERVLB4_3q25.2c"; transcript_id "ERVLB4_3q25.2c"; locus "ERVLB4_3q25.2c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0376"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_3q25.2d ### chr3 rmsk gene 155274437 155280798 . - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0307"; model_cov "5697"; model_pct "73.9"; chr3 rmsk exon 155274437 155274841 2714 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 155274842 155275218 2280 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 155275219 155275438 1340 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 155275440 155277518 8100 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "5855"; repFamily "ERV1"; repLeft "3760"; repStart "-1858"; chr3 rmsk exon 155277497 155280392 14979 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 155280395 155280798 2559 - . gene_id "HERVH_3q25.2d"; transcript_id "HERVH_3q25.2d"; locus "HERVH_3q25.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0307"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q25.2e ### chr3 rmsk gene 155282777 155284930 . - . gene_id "HERVH_3q25.2e"; transcript_id "HERVH_3q25.2e"; locus "HERVH_3q25.2e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0308"; model_cov "1219"; model_pct "15.8"; chr3 rmsk exon 155282777 155283245 3495 - . gene_id "HERVH_3q25.2e"; transcript_id "HERVH_3q25.2e"; locus "HERVH_3q25.2e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0308"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 155283246 155283400 405 - . gene_id "HERVH_3q25.2e"; transcript_id "HERVH_3q25.2e"; locus "HERVH_3q25.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0308"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7564"; repStart "0"; chr3 rmsk exon 155283777 155284930 2216 - . gene_id "HERVH_3q25.2e"; transcript_id "HERVH_3q25.2e"; locus "HERVH_3q25.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0308"; repClass "LTR"; repEnd "4432"; repFamily "ERV1"; repLeft "3362"; repStart "-3281"; ### MER61_3q25.31 ### chr3 rmsk gene 155324174 155325889 . + . gene_id "MER61_3q25.31"; transcript_id "MER61_3q25.31"; locus "MER61_3q25.31"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0099"; model_cov "1421"; model_pct "27.2"; chr3 rmsk exon 155324174 155325538 9475 + . gene_id "MER61_3q25.31"; transcript_id "MER61_3q25.31"; locus "MER61_3q25.31"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0099"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3796"; chr3 rmsk exon 155325541 155325889 1694 + . gene_id "MER61_3q25.31"; transcript_id "MER61_3q25.31"; locus "MER61_3q25.31"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0099"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_3q25.31 ### chr3 rmsk gene 155332201 155334090 . + . gene_id "ERV316A3_3q25.31"; transcript_id "ERV316A3_3q25.31"; locus "ERV316A3_3q25.31"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0569"; model_cov "1583"; model_pct "30.3"; chr3 rmsk exon 155332201 155333689 3846 + . gene_id "ERV316A3_3q25.31"; transcript_id "ERV316A3_3q25.31"; locus "ERV316A3_3q25.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0569"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "-1945"; repStart "1798"; chr3 rmsk exon 155333993 155334090 3563 + . gene_id "ERV316A3_3q25.31"; transcript_id "ERV316A3_3q25.31"; locus "ERV316A3_3q25.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0569"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "-1844"; repStart "3282"; ### ERVLB4_3q25.31a ### chr3 rmsk gene 155451454 155453110 . + . gene_id "ERVLB4_3q25.31a"; transcript_id "ERVLB4_3q25.31a"; locus "ERVLB4_3q25.31a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0377"; model_cov "637"; model_pct "11.1"; chr3 rmsk exon 155451454 155452061 1411 + . gene_id "ERVLB4_3q25.31a"; transcript_id "ERVLB4_3q25.31a"; locus "ERVLB4_3q25.31a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0377"; repClass "LTR"; repEnd "528"; repFamily "ERVL"; repLeft "-28"; repStart "2"; chr3 rmsk exon 155452415 155452442 396 + . gene_id "ERVLB4_3q25.31a"; transcript_id "ERVLB4_3q25.31a"; locus "ERVLB4_3q25.31a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0377"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-4"; repStart "529"; chr3 rmsk exon 155452468 155453110 2951 + . gene_id "ERVLB4_3q25.31a"; transcript_id "ERVLB4_3q25.31a"; locus "ERVLB4_3q25.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0377"; repClass "LTR"; repEnd "694"; repFamily "ERVL"; repLeft "-5020"; repStart "57"; ### ERVLB4_3q25.31b ### chr3 rmsk gene 155460332 155462306 . + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0378"; model_cov "1865"; model_pct "32.6"; chr3 rmsk exon 155460332 155460748 1735 + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0378"; repClass "LTR"; repEnd "2396"; repFamily "ERVL"; repLeft "-3318"; repStart "1960"; chr3 rmsk exon 155460846 155461357 1735 + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0378"; repClass "LTR"; repEnd "2908"; repFamily "ERVL"; repLeft "-2806"; repStart "2397"; chr3 rmsk exon 155461353 155461755 555 + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0378"; repClass "LTR"; repEnd "3716"; repFamily "ERVL"; repLeft "-1998"; repStart "3308"; chr3 rmsk exon 155461746 155461910 540 + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0378"; repClass "LTR"; repEnd "4138"; repFamily "ERVL"; repLeft "-1576"; repStart "3979"; chr3 rmsk exon 155461925 155462306 621 + . gene_id "ERVLB4_3q25.31b"; transcript_id "ERVLB4_3q25.31b"; locus "ERVLB4_3q25.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0378"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "-582"; repStart "4781"; ### HERVL18_3q25.31 ### chr3 rmsk gene 156620366 156626577 . + . gene_id "HERVL18_3q25.31"; transcript_id "HERVL18_3q25.31"; locus "HERVL18_3q25.31"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0037"; model_cov "5538"; model_pct "91.6"; chr3 rmsk exon 156620366 156620695 2283 + . gene_id "HERVL18_3q25.31"; transcript_id "HERVL18_3q25.31"; locus "HERVL18_3q25.31"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0037"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr3 rmsk exon 156620710 156620991 1802 + . gene_id "HERVL18_3q25.31"; transcript_id "HERVL18_3q25.31"; locus "HERVL18_3q25.31"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0037"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "-5757"; repStart "9"; chr3 rmsk exon 156620989 156626236 34252 + . gene_id "HERVL18_3q25.31"; transcript_id "HERVL18_3q25.31"; locus "HERVL18_3q25.31"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0037"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "790"; chr3 rmsk exon 156626238 156626577 2449 + . gene_id "HERVL18_3q25.31"; transcript_id "HERVL18_3q25.31"; locus "HERVL18_3q25.31"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0037"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_3q25.32 ### chr3 rmsk gene 157394741 157398992 . - . gene_id "HERVL_3q25.32"; transcript_id "HERVL_3q25.32"; locus "HERVL_3q25.32"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0309"; model_cov "1865"; model_pct "33.0"; chr3 rmsk exon 157394741 157395707 5907 - . gene_id "HERVL_3q25.32"; transcript_id "HERVL_3q25.32"; locus "HERVL_3q25.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0309"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "3899"; repStart "-778"; chr3 rmsk exon 157397732 157398353 5164 - . gene_id "HERVL_3q25.32"; transcript_id "HERVL_3q25.32"; locus "HERVL_3q25.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0309"; repClass "LTR"; repEnd "3915"; repFamily "ERVL"; repLeft "3285"; repStart "-1739"; chr3 rmsk exon 157398650 157398909 5164 - . gene_id "HERVL_3q25.32"; transcript_id "HERVL_3q25.32"; locus "HERVL_3q25.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0309"; repClass "LTR"; repEnd "3284"; repFamily "ERVL"; repLeft "3026"; repStart "-2370"; chr3 rmsk exon 157398913 157398992 440 - . gene_id "HERVL_3q25.32"; transcript_id "HERVL_3q25.32"; locus "HERVL_3q25.32"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0309"; repClass "LTR"; repEnd "80"; repFamily "ERVL"; repLeft "1"; repStart "-474"; ### ERV316A3_3q25.32a ### chr3 rmsk gene 157475517 157478417 . + . gene_id "ERV316A3_3q25.32a"; transcript_id "ERV316A3_3q25.32a"; locus "ERV316A3_3q25.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0570"; model_cov "1854"; model_pct "35.5"; chr3 rmsk exon 157475517 157477024 1324 + . gene_id "ERV316A3_3q25.32a"; transcript_id "ERV316A3_3q25.32a"; locus "ERV316A3_3q25.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0570"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "-178"; repStart "3458"; chr3 rmsk exon 157477515 157477561 845 + . gene_id "ERV316A3_3q25.32a"; transcript_id "ERV316A3_3q25.32a"; locus "ERV316A3_3q25.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0570"; repClass "LTR"; repEnd "5092"; repFamily "ERVL"; repLeft "-134"; repStart "5049"; chr3 rmsk exon 157477555 157477766 852 + . gene_id "ERV316A3_3q25.32a"; transcript_id "ERV316A3_3q25.32a"; locus "ERV316A3_3q25.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0570"; repClass "LTR"; repEnd "3955"; repFamily "ERVL"; repLeft "-1271"; repStart "3734"; chr3 rmsk exon 157478003 157478417 1316 + . gene_id "ERV316A3_3q25.32a"; transcript_id "ERV316A3_3q25.32a"; locus "ERV316A3_3q25.32a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0570"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### HERVEA_3q25.32 ### chr3 rmsk gene 157579228 157588006 . - . gene_id "HERVEA_3q25.32"; transcript_id "HERVEA_3q25.32"; locus "HERVEA_3q25.32"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0027"; model_cov "7846"; model_pct "100.0"; chr3 rmsk exon 157579228 157579682 3539 - . gene_id "HERVEA_3q25.32"; transcript_id "HERVEA_3q25.32"; locus "HERVEA_3q25.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0027"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "8"; repStart "0"; chr3 rmsk exon 157579687 157587547 62664 - . gene_id "HERVEA_3q25.32"; transcript_id "HERVEA_3q25.32"; locus "HERVEA_3q25.32"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0027"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 157587548 157588006 3636 - . gene_id "HERVEA_3q25.32"; transcript_id "HERVEA_3q25.32"; locus "HERVEA_3q25.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0027"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_3q25.32 ### chr3 rmsk gene 158617544 158621915 . - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0101"; model_cov "2550"; model_pct "37.7"; chr3 rmsk exon 158617544 158617726 3286 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "3767"; repFamily "ERV1"; repLeft "3597"; repStart "-2991"; chr3 rmsk exon 158618031 158618700 3286 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "3596"; repFamily "ERV1"; repLeft "2897"; repStart "-3162"; chr3 rmsk exon 158618939 158619648 4296 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "2656"; repFamily "ERV1"; repLeft "1924"; repStart "-4102"; chr3 rmsk exon 158619714 158620057 4891 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "743"; repStart "-5609"; chr3 rmsk exon 158620329 158620371 4891 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "742"; repFamily "ERV1"; repLeft "701"; repStart "-6016"; chr3 rmsk exon 158620682 158620863 4891 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "529"; repStart "-6058"; chr3 rmsk exon 158621142 158621206 4891 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "528"; repFamily "ERV1"; repLeft "473"; repStart "-6230"; chr3 rmsk exon 158621636 158621915 4891 - . gene_id "MER4B_3q25.32"; transcript_id "MER4B_3q25.32"; locus "MER4B_3q25.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0101"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "196"; repStart "-6286"; ### HERVIP10F_3q25.32 ### chr3 rmsk gene 158622961 158625639 . - . gene_id "HERVIP10F_3q25.32"; transcript_id "HERVIP10F_3q25.32"; locus "HERVIP10F_3q25.32"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0033"; model_cov "2230"; model_pct "28.8"; chr3 rmsk exon 158622961 158623482 3593 - . gene_id "HERVIP10F_3q25.32"; transcript_id "HERVIP10F_3q25.32"; locus "HERVIP10F_3q25.32"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0033"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 158623484 158625639 7486 - . gene_id "HERVIP10F_3q25.32"; transcript_id "HERVIP10F_3q25.32"; locus "HERVIP10F_3q25.32"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0033"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "5505"; repStart "-2"; ### HERVI_3q25.32 ### chr3 rmsk gene 158625657 158628230 . - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0006"; model_cov "1561"; model_pct "20.1"; chr3 rmsk exon 158625657 158625749 304 - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0006"; repClass "LTR"; repEnd "5417"; repFamily "ERV1"; repLeft "5331"; repStart "-2368"; chr3 rmsk exon 158625735 158625872 662 - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0006"; repClass "LTR"; repEnd "4849"; repFamily "ERV1"; repLeft "4710"; repStart "-2936"; chr3 rmsk exon 158625892 158626463 1765 - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0006"; repClass "LTR"; repEnd "4639"; repFamily "ERV1"; repLeft "4224"; repStart "-3146"; chr3 rmsk exon 158627219 158628154 3527 - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0006"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "78"; repStart "-6786"; chr3 rmsk exon 158628171 158628230 366 - . gene_id "HERVI_3q25.32"; transcript_id "HERVI_3q25.32"; locus "HERVI_3q25.32"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0006"; repClass "LTR"; repEnd "60"; repFamily "ERV1"; repLeft "1"; repStart "-463"; ### ERVLE_3q25.32 ### chr3 rmsk gene 158892606 158896116 . - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0857"; model_cov "3300"; model_pct "58.2"; chr3 rmsk exon 158892606 158894098 4018 - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0857"; repClass "LTR"; repEnd "5639"; repFamily "ERVL"; repLeft "4082"; repStart "-28"; chr3 rmsk exon 158894461 158894635 4018 - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0857"; repClass "LTR"; repEnd "4081"; repFamily "ERVL"; repLeft "3902"; repStart "-1586"; chr3 rmsk exon 158894622 158895744 1542 - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0857"; repClass "LTR"; repEnd "3574"; repFamily "ERVL"; repLeft "2284"; repStart "-2093"; chr3 rmsk exon 158895792 158895926 556 - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0857"; repClass "LTR"; repEnd "2119"; repFamily "ERVL"; repLeft "1984"; repStart "-3548"; chr3 rmsk exon 158895980 158896116 409 - . gene_id "ERVLE_3q25.32"; transcript_id "ERVLE_3q25.32"; locus "ERVLE_3q25.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0857"; repClass "LTR"; repEnd "1906"; repFamily "ERVL"; repLeft "1767"; repStart "-3761"; ### ERV316A3_3q25.32b ### chr3 rmsk gene 159192378 159193972 . - . gene_id "ERV316A3_3q25.32b"; transcript_id "ERV316A3_3q25.32b"; locus "ERV316A3_3q25.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0572"; model_cov "1168"; model_pct "22.3"; chr3 rmsk exon 159192378 159192782 1498 - . gene_id "ERV316A3_3q25.32b"; transcript_id "ERV316A3_3q25.32b"; locus "ERV316A3_3q25.32b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0572"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "-16"; chr3 rmsk exon 159192839 159193192 1031 - . gene_id "ERV316A3_3q25.32b"; transcript_id "ERV316A3_3q25.32b"; locus "ERV316A3_3q25.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0572"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4811"; repStart "-50"; chr3 rmsk exon 159193183 159193972 1543 - . gene_id "ERV316A3_3q25.32b"; transcript_id "ERV316A3_3q25.32b"; locus "ERV316A3_3q25.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0572"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "3831"; repStart "-592"; ### HERVL_3q25.33 ### chr3 rmsk gene 159316147 159319240 . - . gene_id "HERVL_3q25.33"; transcript_id "HERVL_3q25.33"; locus "HERVL_3q25.33"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0310"; model_cov "2588"; model_pct "45.8"; chr3 rmsk exon 159316147 159316584 3046 - . gene_id "HERVL_3q25.33"; transcript_id "HERVL_3q25.33"; locus "HERVL_3q25.33"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0310"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr3 rmsk exon 159316585 159319077 20078 - . gene_id "HERVL_3q25.33"; transcript_id "HERVL_3q25.33"; locus "HERVL_3q25.33"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0310"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3148"; repStart "0"; chr3 rmsk exon 159319158 159319240 717 - . gene_id "HERVL_3q25.33"; transcript_id "HERVL_3q25.33"; locus "HERVL_3q25.33"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0310"; repClass "LTR"; repEnd "3144"; repFamily "ERVL"; repLeft "3062"; repStart "-2510"; ### MER4B_3q25.33a ### chr3 rmsk gene 160051773 160054533 . + . gene_id "MER4B_3q25.33a"; transcript_id "MER4B_3q25.33a"; locus "MER4B_3q25.33a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0103"; model_cov "1088"; model_pct "16.1"; chr3 rmsk exon 160051773 160051903 3485 + . gene_id "MER4B_3q25.33a"; transcript_id "MER4B_3q25.33a"; locus "MER4B_3q25.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0103"; repClass "LTR"; repEnd "3294"; repFamily "ERV1"; repLeft "-3464"; repStart "3177"; chr3 rmsk exon 160052206 160052860 3485 + . gene_id "MER4B_3q25.33a"; transcript_id "MER4B_3q25.33a"; locus "MER4B_3q25.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0103"; repClass "LTR"; repEnd "3971"; repFamily "ERV1"; repLeft "-2787"; repStart "3295"; chr3 rmsk exon 160053433 160053593 3485 + . gene_id "MER4B_3q25.33a"; transcript_id "MER4B_3q25.33a"; locus "MER4B_3q25.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0103"; repClass "LTR"; repEnd "4199"; repFamily "ERV1"; repLeft "-2559"; repStart "3972"; chr3 rmsk exon 160054455 160054533 3485 + . gene_id "MER4B_3q25.33a"; transcript_id "MER4B_3q25.33a"; locus "MER4B_3q25.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0103"; repClass "LTR"; repEnd "4450"; repFamily "ERV1"; repLeft "-2308"; repStart "4382"; ### MER4B_3q25.33b ### chr3 rmsk gene 160252106 160253964 . + . gene_id "MER4B_3q25.33b"; transcript_id "MER4B_3q25.33b"; locus "MER4B_3q25.33b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0104"; model_cov "1255"; model_pct "18.6"; chr3 rmsk exon 160252106 160252281 4566 + . gene_id "MER4B_3q25.33b"; transcript_id "MER4B_3q25.33b"; locus "MER4B_3q25.33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0104"; repClass "LTR"; repEnd "3245"; repFamily "ERV1"; repLeft "-3513"; repStart "3085"; chr3 rmsk exon 160252880 160253964 4566 + . gene_id "MER4B_3q25.33b"; transcript_id "MER4B_3q25.33b"; locus "MER4B_3q25.33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0104"; repClass "LTR"; repEnd "4341"; repFamily "ERV1"; repLeft "-2417"; repStart "3246"; ### ERVLB4_3q25.33 ### chr3 rmsk gene 160611156 160612314 . + . gene_id "ERVLB4_3q25.33"; transcript_id "ERVLB4_3q25.33"; locus "ERVLB4_3q25.33"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0379"; model_cov "1412"; model_pct "24.7"; chr3 rmsk exon 160611156 160612314 1472 + . gene_id "ERVLB4_3q25.33"; transcript_id "ERVLB4_3q25.33"; locus "ERVLB4_3q25.33"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0379"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-398"; repStart "3904"; ### ERVLE_3q25.33 ### chr3 rmsk gene 160703616 160704816 . + . gene_id "ERVLE_3q25.33"; transcript_id "ERVLE_3q25.33"; locus "ERVLE_3q25.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0858"; model_cov "1295"; model_pct "22.9"; chr3 rmsk exon 160703616 160704816 723 + . gene_id "ERVLE_3q25.33"; transcript_id "ERVLE_3q25.33"; locus "ERVLE_3q25.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0858"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-4057"; repStart "315"; ### MER41_3q26.1a ### chr3 rmsk gene 161139778 161149489 . + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0105"; model_cov "6600"; model_pct "100.0"; chr3 rmsk exon 161139778 161140366 2574 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0105"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "-6"; repStart "1"; chr3 rmsk exon 161140870 161141578 10217 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "1077"; repFamily "ERV1"; repLeft "-4869"; repStart "395"; chr3 rmsk exon 161141888 161143018 13105 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "1674"; repFamily "ERV1"; repLeft "-4272"; repStart "106"; chr3 rmsk exon 161143326 161143580 13105 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "1913"; repFamily "ERV1"; repLeft "-4033"; repStart "1675"; chr3 rmsk exon 161143945 161145132 19316 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "3254"; repFamily "ERV1"; repLeft "-2692"; repStart "1586"; chr3 rmsk exon 161145268 161145443 19316 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "3643"; repFamily "ERV1"; repLeft "-2303"; repStart "3496"; chr3 rmsk exon 161145749 161146029 19316 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "3913"; repFamily "ERV1"; repLeft "-2033"; repStart "3644"; chr3 rmsk exon 161146339 161147200 19316 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "4781"; repFamily "ERV1"; repLeft "-1165"; repStart "3914"; chr3 rmsk exon 161147789 161148921 19316 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0105"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "4782"; chr3 rmsk exon 161148924 161149489 2513 + . gene_id "MER41_3q26.1a"; transcript_id "MER41_3q26.1a"; locus "MER41_3q26.1a"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0105"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_3q26.1a ### chr3 rmsk gene 161180279 161182641 . - . gene_id "MER4_3q26.1a"; transcript_id "MER4_3q26.1a"; locus "MER4_3q26.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0169"; model_cov "2001"; model_pct "30.3"; chr3 rmsk exon 161180279 161180729 3089 - . gene_id "MER4_3q26.1a"; transcript_id "MER4_3q26.1a"; locus "MER4_3q26.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0169"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 161180732 161182641 11866 - . gene_id "MER4_3q26.1a"; transcript_id "MER4_3q26.1a"; locus "MER4_3q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0169"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4597"; repStart "0"; ### HERVH_3q26.1a ### chr3 rmsk gene 161721915 161727777 . - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0310"; model_cov "4922"; model_pct "63.8"; chr3 rmsk exon 161721915 161722322 2798 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 161722323 161722699 2344 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 161722698 161722913 1367 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 161722915 161723577 4463 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 161723580 161724081 3343 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 161724072 161724241 824 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr3 rmsk exon 161724214 161727368 16953 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 161727371 161727777 2730 - . gene_id "HERVH_3q26.1a"; transcript_id "HERVH_3q26.1a"; locus "HERVH_3q26.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0310"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_3q26.1a ### chr3 rmsk gene 161769754 161774597 . - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0860"; model_cov "3943"; model_pct "69.6"; chr3 rmsk exon 161769754 161770445 1922 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "4610"; repFamily "ERVL"; repLeft "3895"; repStart "-1057"; chr3 rmsk exon 161770469 161770845 1069 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "3420"; repStart "-1853"; chr3 rmsk exon 161770845 161770976 273 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "3406"; repFamily "ERVL"; repLeft "3264"; repStart "-2261"; chr3 rmsk exon 161771022 161771825 1262 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "3179"; repFamily "ERVL"; repLeft "2341"; repStart "-2488"; chr3 rmsk exon 161771827 161771915 357 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "2133"; repFamily "ERVL"; repLeft "2046"; repStart "-3534"; chr3 rmsk exon 161772552 161772776 504 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "1917"; repFamily "ERVL"; repLeft "1689"; repStart "-3750"; chr3 rmsk exon 161772767 161773079 1365 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "1585"; repFamily "ERVL"; repLeft "1320"; repStart "-4082"; chr3 rmsk exon 161773375 161774597 1365 - . gene_id "ERVLE_3q26.1a"; transcript_id "ERVLE_3q26.1a"; locus "ERVLE_3q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0860"; repClass "LTR"; repEnd "1319"; repFamily "ERVL"; repLeft "45"; repStart "-4348"; ### HERV30_3q26.1 ### chr3 rmsk gene 161845954 161854038 . - . gene_id "HERV30_3q26.1"; transcript_id "HERV30_3q26.1"; locus "HERV30_3q26.1"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0005"; model_cov "7196"; model_pct "87.2"; chr3 rmsk exon 161845954 161846159 988 - . gene_id "HERV30_3q26.1"; transcript_id "HERV30_3q26.1"; locus "HERV30_3q26.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0005"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "511"; repStart "0"; chr3 rmsk exon 161846175 161846865 4344 - . gene_id "HERV30_3q26.1"; transcript_id "HERV30_3q26.1"; locus "HERV30_3q26.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0005"; repClass "LTR"; repEnd "7198"; repFamily "ERV1"; repLeft "6509"; repStart "-1059"; chr3 rmsk exon 161846939 161853325 28347 - . gene_id "HERV30_3q26.1"; transcript_id "HERV30_3q26.1"; locus "HERV30_3q26.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0005"; repClass "LTR"; repEnd "6509"; repFamily "ERV1"; repLeft "2"; repStart "-1748"; chr3 rmsk exon 161853326 161854038 4589 - . gene_id "HERV30_3q26.1"; transcript_id "HERV30_3q26.1"; locus "HERV30_3q26.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0005"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVEA_3q26.1 ### chr3 rmsk gene 161937116 161939117 . + . gene_id "HERVEA_3q26.1"; transcript_id "HERVEA_3q26.1"; locus "HERVEA_3q26.1"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0028"; model_cov "1534"; model_pct "19.5"; chr3 rmsk exon 161937116 161938658 12798 + . gene_id "HERVEA_3q26.1"; transcript_id "HERVEA_3q26.1"; locus "HERVEA_3q26.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0028"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "6313"; chr3 rmsk exon 161938659 161939117 3739 + . gene_id "HERVEA_3q26.1"; transcript_id "HERVEA_3q26.1"; locus "HERVEA_3q26.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0028"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_3q26.1 ### chr3 rmsk gene 162044535 162052725 . - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0050"; model_cov "6893"; model_pct "100.0"; chr3 rmsk exon 162044535 162044981 3503 - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0050"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 162044982 162048881 52502 - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0050"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "2997"; repStart "0"; chr3 rmsk exon 162049186 162050769 52502 - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0050"; repClass "LTR"; repEnd "2996"; repFamily "ERV1"; repLeft "1421"; repStart "-3900"; chr3 rmsk exon 162050799 162052265 52502 - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0050"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "1"; repStart "-5476"; chr3 rmsk exon 162052266 162052725 3510 - . gene_id "HARLEQUIN_3q26.1"; transcript_id "HARLEQUIN_3q26.1"; locus "HARLEQUIN_3q26.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0050"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_3q26.1b ### chr3 rmsk gene 162132993 162134045 . - . gene_id "ERVLE_3q26.1b"; transcript_id "ERVLE_3q26.1b"; locus "ERVLE_3q26.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0862"; model_cov "1107"; model_pct "19.5"; chr3 rmsk exon 162132993 162134045 2203 - . gene_id "ERVLE_3q26.1b"; transcript_id "ERVLE_3q26.1b"; locus "ERVLE_3q26.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0862"; repClass "LTR"; repEnd "2085"; repFamily "ERVL"; repLeft "978"; repStart "-3582"; ### HERVH_3q26.1b ### chr3 rmsk gene 162153421 162159637 . - . gene_id "HERVH_3q26.1b"; transcript_id "HERVH_3q26.1b"; locus "HERVH_3q26.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0311"; model_cov "5491"; model_pct "71.2"; chr3 rmsk exon 162153421 162153850 3197 - . gene_id "HERVH_3q26.1b"; transcript_id "HERVH_3q26.1b"; locus "HERVH_3q26.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0311"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 162153851 162154383 3140 - . gene_id "HERVH_3q26.1b"; transcript_id "HERVH_3q26.1b"; locus "HERVH_3q26.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0311"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 162154377 162154643 1552 - . gene_id "HERVH_3q26.1b"; transcript_id "HERVH_3q26.1b"; locus "HERVH_3q26.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0311"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr3 rmsk exon 162154641 162159637 17945 - . gene_id "HERVH_3q26.1b"; transcript_id "HERVH_3q26.1b"; locus "HERVH_3q26.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0311"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "247"; repStart "-2798"; ### HERVW_3q26.1a ### chr3 rmsk gene 162322679 162328369 . + . gene_id "HERVW_3q26.1a"; transcript_id "HERVW_3q26.1a"; locus "HERVW_3q26.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0078"; model_cov "5314"; model_pct "61.6"; chr3 rmsk exon 162322679 162327725 40334 + . gene_id "HERVW_3q26.1a"; transcript_id "HERVW_3q26.1a"; locus "HERVW_3q26.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0078"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1033"; chr3 rmsk exon 162327720 162327757 275 + . gene_id "HERVW_3q26.1a"; transcript_id "HERVW_3q26.1a"; locus "HERVW_3q26.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0078"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7511"; chr3 rmsk exon 162327748 162328039 2332 + . gene_id "HERVW_3q26.1a"; transcript_id "HERVW_3q26.1a"; locus "HERVW_3q26.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0078"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 162328040 162328369 2451 + . gene_id "HERVW_3q26.1a"; transcript_id "HERVW_3q26.1a"; locus "HERVW_3q26.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0078"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERV4_3q26.1 ### chr3 rmsk gene 162403059 162405374 . - . gene_id "HERV4_3q26.1"; transcript_id "HERV4_3q26.1"; locus "HERV4_3q26.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0029"; model_cov "2075"; model_pct "31.7"; chr3 rmsk exon 162403059 162403750 12374 - . gene_id "HERV4_3q26.1"; transcript_id "HERV4_3q26.1"; locus "HERV4_3q26.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0029"; repClass "LTR"; repEnd "2703"; repFamily "ERV1"; repLeft "2021"; repStart "-3836"; chr3 rmsk exon 162404059 162405374 12374 - . gene_id "HERV4_3q26.1"; transcript_id "HERV4_3q26.1"; locus "HERV4_3q26.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0029"; repClass "LTR"; repEnd "2020"; repFamily "ERV1"; repLeft "627"; repStart "-4519"; ### HUERSP3B_3q26.1 ### chr3 rmsk gene 162434437 162440353 . - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0033"; model_cov "5303"; model_pct "71.5"; chr3 rmsk exon 162434437 162435021 2567 - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0033"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 162435171 162437064 10764 - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0033"; repClass "LTR"; repEnd "5026"; repFamily "ERV1"; repLeft "1788"; repStart "-2392"; chr3 rmsk exon 162437699 162439470 3823 - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0033"; repClass "LTR"; repEnd "2643"; repFamily "ERV1"; repLeft "732"; repStart "-4775"; chr3 rmsk exon 162439483 162439633 612 - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0033"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "409"; repStart "-6855"; chr3 rmsk exon 162439730 162440353 2312 - . gene_id "HUERSP3B_3q26.1"; transcript_id "HUERSP3B_3q26.1"; locus "HUERSP3B_3q26.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0033"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP1_3q26.1 ### chr3 rmsk gene 162546999 162554294 . - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0051"; model_cov "6458"; model_pct "100.0"; chr3 rmsk exon 162546999 162547536 2852 - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0051"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "1"; repStart "-104"; chr3 rmsk exon 162547538 162549540 24105 - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0051"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "3724"; repStart "-1"; chr3 rmsk exon 162549908 162553486 24105 - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0051"; repClass "LTR"; repEnd "3922"; repFamily "ERV1"; repLeft "378"; repStart "-2341"; chr3 rmsk exon 162553790 162554150 24105 - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0051"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "1"; repStart "-5886"; chr3 rmsk exon 162554151 162554294 1075 - . gene_id "HUERSP1_3q26.1"; transcript_id "HUERSP1_3q26.1"; locus "HUERSP1_3q26.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0051"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "548"; repStart "0"; ### ERVLE_3q26.1c ### chr3 rmsk gene 162570093 162571930 . + . gene_id "ERVLE_3q26.1c"; transcript_id "ERVLE_3q26.1c"; locus "ERVLE_3q26.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0863"; model_cov "1528"; model_pct "27.0"; chr3 rmsk exon 162570093 162571024 2572 + . gene_id "ERVLE_3q26.1c"; transcript_id "ERVLE_3q26.1c"; locus "ERVLE_3q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0863"; repClass "LTR"; repEnd "936"; repFamily "ERVL"; repLeft "-4731"; repStart "1"; chr3 rmsk exon 162571325 162571930 2572 + . gene_id "ERVLE_3q26.1c"; transcript_id "ERVLE_3q26.1c"; locus "ERVLE_3q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0863"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "-4137"; repStart "937"; ### HERVL_3q26.1a ### chr3 rmsk gene 162635173 162638640 . - . gene_id "HERVL_3q26.1a"; transcript_id "HERVL_3q26.1a"; locus "HERVL_3q26.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0311"; model_cov "2937"; model_pct "51.9"; chr3 rmsk exon 162635173 162635246 290 - . gene_id "HERVL_3q26.1a"; transcript_id "HERVL_3q26.1a"; locus "HERVL_3q26.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0311"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "376"; repStart "0"; chr3 rmsk exon 162635327 162635482 789 - . gene_id "HERVL_3q26.1a"; transcript_id "HERVL_3q26.1a"; locus "HERVL_3q26.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0311"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "232"; repStart "-40"; chr3 rmsk exon 162635483 162635509 21587 - . gene_id "HERVL_3q26.1a"; transcript_id "HERVL_3q26.1a"; locus "HERVL_3q26.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0311"; repClass "LTR"; repEnd "3300"; repFamily "ERVL"; repLeft "3278"; repStart "-2354"; chr3 rmsk exon 162635813 162638640 21587 - . gene_id "HERVL_3q26.1a"; transcript_id "HERVL_3q26.1a"; locus "HERVL_3q26.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0311"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "362"; repStart "-2377"; ### MER61_3q26.1a ### chr3 rmsk gene 162664842 162670648 . + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0100"; model_cov "4237"; model_pct "81.2"; chr3 rmsk exon 162664842 162665165 1563 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0100"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 162665234 162665860 2115 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0100"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "81"; chr3 rmsk exon 162665854 162666691 7550 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0100"; repClass "LTR"; repEnd "2264"; repFamily "ERV1"; repLeft "-2953"; repStart "1655"; chr3 rmsk exon 162667460 162670056 21393 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0100"; repClass "LTR"; repEnd "4825"; repFamily "ERV1"; repLeft "-392"; repStart "2170"; chr3 rmsk exon 162670036 162670307 1851 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0100"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "-4"; repStart "4936"; chr3 rmsk exon 162670312 162670648 1917 + . gene_id "MER61_3q26.1a"; transcript_id "MER61_3q26.1a"; locus "MER61_3q26.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0100"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3q26.1c ### chr3 rmsk gene 162712460 162718258 . + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0312"; model_cov "5119"; model_pct "66.4"; chr3 rmsk exon 162712460 162712907 2824 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 162712911 162715808 14673 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 162715788 162716635 5601 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr3 rmsk exon 162716638 162717249 2899 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 162717247 162717485 1351 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr3 rmsk exon 162717486 162717858 2324 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 162717859 162718258 2423 + . gene_id "HERVH_3q26.1c"; transcript_id "HERVH_3q26.1c"; locus "HERVH_3q26.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0312"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_3q26.1d ### chr3 rmsk gene 162722818 162727229 . - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0313"; model_cov "4015"; model_pct "52.1"; chr3 rmsk exon 162722818 162723253 2747 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 162723254 162723489 1358 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7479"; repStart "0"; chr3 rmsk exon 162723502 162723590 601 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "7410"; repFamily "ERV1"; repLeft "7322"; repStart "-303"; chr3 rmsk exon 162723589 162723788 1208 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 162723790 162723914 597 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5025"; repStart "-2564"; chr3 rmsk exon 162723898 162724087 1236 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "4835"; repFamily "ERV1"; repLeft "4652"; repStart "-2878"; chr3 rmsk exon 162724075 162727229 20467 - . gene_id "HERVH_3q26.1d"; transcript_id "HERVH_3q26.1d"; locus "HERVH_3q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0313"; repClass "LTR"; repEnd "3797"; repFamily "ERV1"; repLeft "630"; repStart "-3916"; ### PRIMA4_3q26.1 ### chr3 rmsk gene 162770616 162774575 . + . gene_id "PRIMA4_3q26.1"; transcript_id "PRIMA4_3q26.1"; locus "PRIMA4_3q26.1"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0059"; model_cov "3643"; model_pct "44.1"; chr3 rmsk exon 162770616 162770877 993 + . gene_id "PRIMA4_3q26.1"; transcript_id "PRIMA4_3q26.1"; locus "PRIMA4_3q26.1"; repName "MER4A"; geneRegion "ltr"; locid "PRIMA4-int_0059"; repClass "LTR"; repEnd "246"; repFamily "ERV1"; repLeft "-418"; repStart "1"; chr3 rmsk exon 162770880 162774575 19005 + . gene_id "PRIMA4_3q26.1"; transcript_id "PRIMA4_3q26.1"; locus "PRIMA4_3q26.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0059"; repClass "LTR"; repEnd "8129"; repFamily "ERV1"; repLeft "-141"; repStart "4486"; ### ERV316A3_3q26.1a ### chr3 rmsk gene 162801178 162803194 . + . gene_id "ERV316A3_3q26.1a"; transcript_id "ERV316A3_3q26.1a"; locus "ERV316A3_3q26.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0573"; model_cov "1579"; model_pct "30.2"; chr3 rmsk exon 162801178 162801529 368 + . gene_id "ERV316A3_3q26.1a"; transcript_id "ERV316A3_3q26.1a"; locus "ERV316A3_3q26.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0573"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "-4688"; repStart "206"; chr3 rmsk exon 162801889 162801985 368 + . gene_id "ERV316A3_3q26.1a"; transcript_id "ERV316A3_3q26.1a"; locus "ERV316A3_3q26.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0573"; repClass "LTR"; repEnd "648"; repFamily "ERVL"; repLeft "-4578"; repStart "539"; chr3 rmsk exon 162802104 162803194 2533 + . gene_id "ERV316A3_3q26.1a"; transcript_id "ERV316A3_3q26.1a"; locus "ERV316A3_3q26.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0573"; repClass "LTR"; repEnd "4010"; repFamily "ERVL"; repLeft "-1216"; repStart "2872"; ### ERVLE_3q26.1d ### chr3 rmsk gene 162958698 162960602 . - . gene_id "ERVLE_3q26.1d"; transcript_id "ERVLE_3q26.1d"; locus "ERVLE_3q26.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0864"; model_cov "1352"; model_pct "23.9"; chr3 rmsk exon 162958698 162959537 1296 - . gene_id "ERVLE_3q26.1d"; transcript_id "ERVLE_3q26.1d"; locus "ERVLE_3q26.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0864"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "4505"; repStart "-303"; chr3 rmsk exon 162960120 162960602 909 - . gene_id "ERVLE_3q26.1d"; transcript_id "ERVLE_3q26.1d"; locus "ERVLE_3q26.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0864"; repClass "LTR"; repEnd "4500"; repFamily "ERVL"; repLeft "4007"; repStart "-1167"; ### ERVLE_3q26.1e ### chr3 rmsk gene 162983034 162983534 . + . gene_id "ERVLE_3q26.1e"; transcript_id "ERVLE_3q26.1e"; locus "ERVLE_3q26.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0866"; model_cov "575"; model_pct "10.1"; chr3 rmsk exon 162983034 162983286 368 + . gene_id "ERVLE_3q26.1e"; transcript_id "ERVLE_3q26.1e"; locus "ERVLE_3q26.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0866"; repClass "LTR"; repEnd "4751"; repFamily "ERVL"; repLeft "-916"; repStart "4466"; chr3 rmsk exon 162983303 162983534 319 + . gene_id "ERVLE_3q26.1e"; transcript_id "ERVLE_3q26.1e"; locus "ERVLE_3q26.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0866"; repClass "LTR"; repEnd "4988"; repFamily "ERVL"; repLeft "-679"; repStart "4698"; ### ERVLE_3q26.1f ### chr3 rmsk gene 163031099 163032675 . - . gene_id "ERVLE_3q26.1f"; transcript_id "ERVLE_3q26.1f"; locus "ERVLE_3q26.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0867"; model_cov "1235"; model_pct "21.8"; chr3 rmsk exon 163031099 163031259 559 - . gene_id "ERVLE_3q26.1f"; transcript_id "ERVLE_3q26.1f"; locus "ERVLE_3q26.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0867"; repClass "LTR"; repEnd "5052"; repFamily "ERVL"; repLeft "4885"; repStart "-615"; chr3 rmsk exon 163031268 163031395 551 - . gene_id "ERVLE_3q26.1f"; transcript_id "ERVLE_3q26.1f"; locus "ERVLE_3q26.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0867"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "4640"; repStart "-913"; chr3 rmsk exon 163031711 163031834 551 - . gene_id "ERVLE_3q26.1f"; transcript_id "ERVLE_3q26.1f"; locus "ERVLE_3q26.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0867"; repClass "LTR"; repEnd "4639"; repFamily "ERVL"; repLeft "4518"; repStart "-1028"; chr3 rmsk exon 163031833 163032675 2001 - . gene_id "ERVLE_3q26.1f"; transcript_id "ERVLE_3q26.1f"; locus "ERVLE_3q26.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0867"; repClass "LTR"; repEnd "4118"; repFamily "ERVL"; repLeft "3285"; repStart "-1549"; ### LTR25_3q26.1 ### chr3 rmsk gene 163052389 163058861 . - . gene_id "LTR25_3q26.1"; transcript_id "LTR25_3q26.1"; locus "LTR25_3q26.1"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0030"; model_cov "5440"; model_pct "75.7"; chr3 rmsk exon 163052389 163053550 7700 - . gene_id "LTR25_3q26.1"; transcript_id "LTR25_3q26.1"; locus "LTR25_3q26.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0030"; repClass "LTR"; repEnd "5444"; repFamily "ERV1"; repLeft "4298"; repStart "-1744"; chr3 rmsk exon 163053852 163057542 12085 - . gene_id "LTR25_3q26.1"; transcript_id "LTR25_3q26.1"; locus "LTR25_3q26.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0030"; repClass "LTR"; repEnd "4297"; repFamily "ERV1"; repLeft "490"; repStart "-2891"; chr3 rmsk exon 163057849 163058183 10311 - . gene_id "LTR25_3q26.1"; transcript_id "LTR25_3q26.1"; locus "LTR25_3q26.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0030"; repClass "LTR"; repEnd "489"; repFamily "ERV1"; repLeft "2"; repStart "-6699"; chr3 rmsk exon 163058185 163058861 3072 - . gene_id "LTR25_3q26.1"; transcript_id "LTR25_3q26.1"; locus "LTR25_3q26.1"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0030"; repClass "LTR"; repEnd "792"; repFamily "ERV1"; repLeft "1"; repStart "-52"; ### ERVL_3q26.1a ### chr3 rmsk gene 163196736 163198868 . + . gene_id "ERVL_3q26.1a"; transcript_id "ERVL_3q26.1a"; locus "ERVL_3q26.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0090"; model_cov "824"; model_pct "14.3"; chr3 rmsk exon 163196736 163197087 330 + . gene_id "ERVL_3q26.1a"; transcript_id "ERVL_3q26.1a"; locus "ERVL_3q26.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0090"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "-5188"; repStart "205"; chr3 rmsk exon 163198269 163198494 297 + . gene_id "ERVL_3q26.1a"; transcript_id "ERVL_3q26.1a"; locus "ERVL_3q26.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0090"; repClass "LTR"; repEnd "2125"; repFamily "ERVL"; repLeft "-3632"; repStart "1825"; chr3 rmsk exon 163198708 163198868 333 + . gene_id "ERVL_3q26.1a"; transcript_id "ERVL_3q26.1a"; locus "ERVL_3q26.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0090"; repClass "LTR"; repEnd "2590"; repFamily "ERVL"; repLeft "-3167"; repStart "2430"; ### MER61_3q26.1b ### chr3 rmsk gene 163324071 163329318 . + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0101"; model_cov "3880"; model_pct "74.4"; chr3 rmsk exon 163324071 163324261 912 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0101"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "-147"; repStart "1"; chr3 rmsk exon 163324246 163324289 313 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0101"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "298"; chr3 rmsk exon 163324291 163324762 1868 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0101"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-4734"; repStart "1"; chr3 rmsk exon 163324976 163325039 315 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0101"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "486"; chr3 rmsk exon 163325185 163325637 20149 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0101"; repClass "LTR"; repEnd "1946"; repFamily "ERV1"; repLeft "-3271"; repStart "1655"; chr3 rmsk exon 163325931 163328801 20149 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0101"; repClass "LTR"; repEnd "4796"; repFamily "ERV1"; repLeft "-421"; repStart "1947"; chr3 rmsk exon 163328792 163328981 1120 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0101"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "5021"; chr3 rmsk exon 163328982 163329318 1790 + . gene_id "MER61_3q26.1b"; transcript_id "MER61_3q26.1b"; locus "MER61_3q26.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0101"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_3q26.1b ### chr3 rmsk gene 163423163 163426281 . - . gene_id "HERVL_3q26.1b"; transcript_id "HERVL_3q26.1b"; locus "HERVL_3q26.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0313"; model_cov "2139"; model_pct "37.8"; chr3 rmsk exon 163423163 163423591 2977 - . gene_id "HERVL_3q26.1b"; transcript_id "HERVL_3q26.1b"; locus "HERVL_3q26.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0313"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr3 rmsk exon 163423592 163424934 9770 - . gene_id "HERVL_3q26.1b"; transcript_id "HERVL_3q26.1b"; locus "HERVL_3q26.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0313"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4313"; repStart "0"; chr3 rmsk exon 163424928 163425719 5803 - . gene_id "HERVL_3q26.1b"; transcript_id "HERVL_3q26.1b"; locus "HERVL_3q26.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0313"; repClass "LTR"; repEnd "863"; repFamily "ERVL"; repLeft "65"; repStart "-4791"; chr3 rmsk exon 163425883 163426281 2788 - . gene_id "HERVL_3q26.1b"; transcript_id "HERVL_3q26.1b"; locus "HERVL_3q26.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0313"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; ### ERV316A3_3q26.1b ### chr3 rmsk gene 163507937 163509280 . + . gene_id "ERV316A3_3q26.1b"; transcript_id "ERV316A3_3q26.1b"; locus "ERV316A3_3q26.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0574"; model_cov "688"; model_pct "13.2"; chr3 rmsk exon 163507937 163508122 525 + . gene_id "ERV316A3_3q26.1b"; transcript_id "ERV316A3_3q26.1b"; locus "ERV316A3_3q26.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0574"; repClass "LTR"; repEnd "2352"; repFamily "ERVL"; repLeft "-2874"; repStart "2178"; chr3 rmsk exon 163508281 163508765 1179 + . gene_id "ERV316A3_3q26.1b"; transcript_id "ERV316A3_3q26.1b"; locus "ERV316A3_3q26.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0574"; repClass "LTR"; repEnd "4974"; repFamily "ERVL"; repLeft "-252"; repStart "4460"; chr3 rmsk exon 163508976 163509190 592 + . gene_id "ERV316A3_3q26.1b"; transcript_id "ERV316A3_3q26.1b"; locus "ERV316A3_3q26.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0574"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "-237"; repStart "1"; chr3 rmsk exon 163509187 163509280 252 + . gene_id "ERV316A3_3q26.1b"; transcript_id "ERV316A3_3q26.1b"; locus "ERV316A3_3q26.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0574"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "367"; ### ERV316A3_3q26.1c ### chr3 rmsk gene 163532508 163533637 . + . gene_id "ERV316A3_3q26.1c"; transcript_id "ERV316A3_3q26.1c"; locus "ERV316A3_3q26.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0575"; model_cov "724"; model_pct "13.9"; chr3 rmsk exon 163532508 163532935 1299 + . gene_id "ERV316A3_3q26.1c"; transcript_id "ERV316A3_3q26.1c"; locus "ERV316A3_3q26.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0575"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "-1593"; repStart "3181"; chr3 rmsk exon 163533108 163533254 576 + . gene_id "ERV316A3_3q26.1c"; transcript_id "ERV316A3_3q26.1c"; locus "ERV316A3_3q26.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0575"; repClass "LTR"; repEnd "3796"; repFamily "ERVL"; repLeft "-1430"; repStart "3645"; chr3 rmsk exon 163533518 163533637 541 + . gene_id "ERV316A3_3q26.1c"; transcript_id "ERV316A3_3q26.1c"; locus "ERV316A3_3q26.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0575"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "-1270"; repStart "3835"; ### HERVL_3q26.1c ### chr3 rmsk gene 163637962 163639404 . - . gene_id "HERVL_3q26.1c"; transcript_id "HERVL_3q26.1c"; locus "HERVL_3q26.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0314"; model_cov "888"; model_pct "15.7"; chr3 rmsk exon 163637962 163638054 438 - . gene_id "HERVL_3q26.1c"; transcript_id "HERVL_3q26.1c"; locus "HERVL_3q26.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0314"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "1"; repStart "-374"; chr3 rmsk exon 163638055 163638271 1201 - . gene_id "HERVL_3q26.1c"; transcript_id "HERVL_3q26.1c"; locus "HERVL_3q26.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0314"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5420"; repStart "0"; chr3 rmsk exon 163638264 163638912 4804 - . gene_id "HERVL_3q26.1c"; transcript_id "HERVL_3q26.1c"; locus "HERVL_3q26.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0314"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "1"; repStart "-4999"; chr3 rmsk exon 163638917 163639404 2759 - . gene_id "HERVL_3q26.1c"; transcript_id "HERVL_3q26.1c"; locus "HERVL_3q26.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0314"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-101"; repStart "-8"; ### HERVW_3q26.1b ### chr3 rmsk gene 163694477 163701027 . - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0079"; model_cov "5236"; model_pct "60.7"; chr3 rmsk exon 163694477 163695239 4702 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 163695240 163695530 2347 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr3 rmsk exon 163695521 163695559 286 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr3 rmsk exon 163695553 163699012 27170 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2574"; repStart "-2607"; chr3 rmsk exon 163699007 163699468 3383 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1537"; repStart "-6622"; chr3 rmsk exon 163699650 163700412 5091 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "1537"; repFamily "ERV1"; repLeft "747"; repStart "-7089"; chr3 rmsk exon 163700725 163700942 1543 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "504"; repStart "-7917"; chr3 rmsk exon 163700943 163701027 585 - . gene_id "HERVW_3q26.1b"; transcript_id "HERVW_3q26.1b"; locus "HERVW_3q26.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0079"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-696"; ### HERV9_3q26.1 ### chr3 rmsk gene 163801602 163807315 . + . gene_id "HERV9_3q26.1"; transcript_id "HERV9_3q26.1"; locus "HERV9_3q26.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0040"; model_cov "5278"; model_pct "62.6"; chr3 rmsk exon 163801602 163802135 3482 + . gene_id "HERV9_3q26.1"; transcript_id "HERV9_3q26.1"; locus "HERV9_3q26.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0040"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 163802156 163807315 32640 + . gene_id "HERV9_3q26.1"; transcript_id "HERV9_3q26.1"; locus "HERV9_3q26.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0040"; repClass "LTR"; repEnd "5307"; repFamily "ERV1"; repLeft "-3129"; repStart "29"; ### HERVH_3q26.1e ### chr3 rmsk gene 163907530 163913988 . + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0314"; model_cov "5770"; model_pct "74.8"; chr3 rmsk exon 163907530 163907935 2591 + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0314"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 163907938 163912987 31183 + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0314"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr3 rmsk exon 163912968 163913204 1370 + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0314"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr3 rmsk exon 163913203 163913581 2429 + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0314"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 163913582 163913988 2589 + . gene_id "HERVH_3q26.1e"; transcript_id "HERVH_3q26.1e"; locus "HERVH_3q26.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0314"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_3q26.1d ### chr3 rmsk gene 163916202 163918587 . + . gene_id "HERVL_3q26.1d"; transcript_id "HERVL_3q26.1d"; locus "HERVL_3q26.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0315"; model_cov "1353"; model_pct "23.9"; chr3 rmsk exon 163916202 163916672 1784 + . gene_id "HERVL_3q26.1d"; transcript_id "HERVL_3q26.1d"; locus "HERVL_3q26.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0315"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-99"; repStart "-100"; chr3 rmsk exon 163916673 163918028 9555 + . gene_id "HERVL_3q26.1d"; transcript_id "HERVL_3q26.1d"; locus "HERVL_3q26.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0315"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "4299"; chr3 rmsk exon 163918031 163918587 2027 + . gene_id "HERVL_3q26.1d"; transcript_id "HERVL_3q26.1d"; locus "HERVL_3q26.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0315"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVFRD_3q26.1a ### chr3 rmsk gene 163923466 163925942 . - . gene_id "HERVFRD_3q26.1a"; transcript_id "HERVFRD_3q26.1a"; locus "HERVFRD_3q26.1a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0045"; model_cov "1849"; model_pct "25.7"; chr3 rmsk exon 163923466 163925275 10170 - . gene_id "HERVFRD_3q26.1a"; transcript_id "HERVFRD_3q26.1a"; locus "HERVFRD_3q26.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0045"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1"; repStart "-5355"; chr3 rmsk exon 163925278 163925942 1987 - . gene_id "HERVFRD_3q26.1a"; transcript_id "HERVFRD_3q26.1a"; locus "HERVFRD_3q26.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0045"; repClass "LTR"; repEnd "683"; repFamily "ERV1"; repLeft "-47"; repStart "-51"; ### HERVFH21_3q26.1 ### chr3 rmsk gene 164017639 164026136 . - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0010"; model_cov "6645"; model_pct "100.0"; chr3 rmsk exon 164017639 164018051 2279 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr3 rmsk exon 164018052 164019109 1953 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "6524"; repFamily "ERV1"; repLeft "5471"; repStart "-5"; chr3 rmsk exon 164019917 164020109 720 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "6087"; repFamily "ERV1"; repLeft "5896"; repStart "-442"; chr3 rmsk exon 164020263 164025721 17039 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "-717"; repStart "-1845"; chr3 rmsk exon 164025725 164025928 1455 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "297"; repStart "0"; chr3 rmsk exon 164025738 164025907 847 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "100"; repStart "0"; chr3 rmsk exon 164025908 164026088 1186 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "88"; repStart "-230"; chr3 rmsk exon 164026089 164026136 847 - . gene_id "HERVFH21_3q26.1"; transcript_id "HERVFH21_3q26.1"; locus "HERVFH21_3q26.1"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0010"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "339"; repStart "0"; ### HERVFRD_3q26.1b ### chr3 rmsk gene 164141531 164148618 . + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0046"; model_cov "5352"; model_pct "74.3"; chr3 rmsk exon 164141531 164142273 4046 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0046"; repClass "LTR"; repEnd "730"; repFamily "ERV1"; repLeft "-4"; repStart "1"; chr3 rmsk exon 164142274 164143883 5601 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0046"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "38"; chr3 rmsk exon 164143880 164147018 15640 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0046"; repClass "LTR"; repEnd "6008"; repFamily "ERV1"; repLeft "-1197"; repStart "2788"; chr3 rmsk exon 164147030 164147105 516 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0046"; repClass "LTR"; repEnd "6957"; repFamily "ERV1"; repLeft "-248"; repStart "6882"; chr3 rmsk exon 164148133 164148379 1374 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0046"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6952"; chr3 rmsk exon 164148380 164148618 1168 + . gene_id "HERVFRD_3q26.1b"; transcript_id "HERVFRD_3q26.1b"; locus "HERVFRD_3q26.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0046"; repClass "LTR"; repEnd "249"; repFamily "ERV1"; repLeft "-485"; repStart "1"; ### HML5_3q26.1 ### chr3 rmsk gene 164215607 164220323 . - . gene_id "HML5_3q26.1"; transcript_id "HML5_3q26.1"; locus "HML5_3q26.1"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0026"; model_cov "4275"; model_pct "62.5"; chr3 rmsk exon 164215607 164216085 2950 - . gene_id "HML5_3q26.1"; transcript_id "HML5_3q26.1"; locus "HML5_3q26.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0026"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 164216086 164220323 30940 - . gene_id "HML5_3q26.1"; transcript_id "HML5_3q26.1"; locus "HML5_3q26.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0026"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2562"; repStart "0"; ### ERVLB4_3q26.1a ### chr3 rmsk gene 164271712 164273724 . + . gene_id "ERVLB4_3q26.1a"; transcript_id "ERVLB4_3q26.1a"; locus "ERVLB4_3q26.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0380"; model_cov "1858"; model_pct "32.5"; chr3 rmsk exon 164271712 164272262 4487 + . gene_id "ERVLB4_3q26.1a"; transcript_id "ERVLB4_3q26.1a"; locus "ERVLB4_3q26.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0380"; repClass "LTR"; repEnd "3477"; repFamily "ERVL"; repLeft "-2237"; repStart "2876"; chr3 rmsk exon 164272584 164273724 4487 + . gene_id "ERVLB4_3q26.1a"; transcript_id "ERVLB4_3q26.1a"; locus "ERVLB4_3q26.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0380"; repClass "LTR"; repEnd "4735"; repFamily "ERVL"; repLeft "-979"; repStart "3478"; ### ERVLB4_3q26.1b ### chr3 rmsk gene 164283902 164284954 . + . gene_id "ERVLB4_3q26.1b"; transcript_id "ERVLB4_3q26.1b"; locus "ERVLB4_3q26.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0381"; model_cov "749"; model_pct "13.1"; chr3 rmsk exon 164283902 164284654 3209 + . gene_id "ERVLB4_3q26.1b"; transcript_id "ERVLB4_3q26.1b"; locus "ERVLB4_3q26.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0381"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4965"; chr3 rmsk exon 164284699 164284954 977 + . gene_id "ERVLB4_3q26.1b"; transcript_id "ERVLB4_3q26.1b"; locus "ERVLB4_3q26.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0381"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "287"; ### MER4_3q26.1b ### chr3 rmsk gene 164326710 164330202 . - . gene_id "MER4_3q26.1b"; transcript_id "MER4_3q26.1b"; locus "MER4_3q26.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0170"; model_cov "1431"; model_pct "21.7"; chr3 rmsk exon 164326710 164327052 1988 - . gene_id "MER4_3q26.1b"; transcript_id "MER4_3q26.1b"; locus "MER4_3q26.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0170"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "82"; repStart "0"; chr3 rmsk exon 164327061 164327733 2242 - . gene_id "MER4_3q26.1b"; transcript_id "MER4_3q26.1b"; locus "MER4_3q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0170"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "5938"; repStart "-5"; chr3 rmsk exon 164329136 164329572 8849 - . gene_id "MER4_3q26.1b"; transcript_id "MER4_3q26.1b"; locus "MER4_3q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0170"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "5525"; repStart "-656"; chr3 rmsk exon 164329868 164330202 8849 - . gene_id "MER4_3q26.1b"; transcript_id "MER4_3q26.1b"; locus "MER4_3q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0170"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "5165"; repStart "-1074"; ### MER4_3q26.1c ### chr3 rmsk gene 164330279 164333945 . - . gene_id "MER4_3q26.1c"; transcript_id "MER4_3q26.1c"; locus "MER4_3q26.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0171"; model_cov "1747"; model_pct "26.5"; chr3 rmsk exon 164330279 164331633 8849 - . gene_id "MER4_3q26.1c"; transcript_id "MER4_3q26.1c"; locus "MER4_3q26.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0171"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "4067"; repStart "-1074"; chr3 rmsk exon 164331922 164332106 8849 - . gene_id "MER4_3q26.1c"; transcript_id "MER4_3q26.1c"; locus "MER4_3q26.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0171"; repClass "LTR"; repEnd "3706"; repFamily "ERV1"; repLeft "3525"; repStart "-2892"; chr3 rmsk exon 164333836 164333945 291 - . gene_id "MER4_3q26.1c"; transcript_id "MER4_3q26.1c"; locus "MER4_3q26.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0171"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "1674"; repStart "-4815"; ### HUERSP2_3q26.1a ### chr3 rmsk gene 164332142 164333833 . - . gene_id "HUERSP2_3q26.1a"; transcript_id "HUERSP2_3q26.1a"; locus "HUERSP2_3q26.1a"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0033"; model_cov "1218"; model_pct "39.4"; chr3 rmsk exon 164332142 164332438 911 - . gene_id "HUERSP2_3q26.1a"; transcript_id "HUERSP2_3q26.1a"; locus "HUERSP2_3q26.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0033"; repClass "LTR"; repEnd "2784"; repFamily "ERV1"; repLeft "2467"; repStart "-304"; chr3 rmsk exon 164332424 164333190 3330 - . gene_id "HUERSP2_3q26.1a"; transcript_id "HUERSP2_3q26.1a"; locus "HUERSP2_3q26.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0033"; repClass "LTR"; repEnd "1398"; repFamily "ERV1"; repLeft "631"; repStart "-1690"; chr3 rmsk exon 164333175 164333318 519 - . gene_id "HUERSP2_3q26.1a"; transcript_id "HUERSP2_3q26.1a"; locus "HUERSP2_3q26.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0033"; repClass "LTR"; repEnd "136"; repFamily "ERV1"; repLeft "2"; repStart "-2952"; chr3 rmsk exon 164333320 164333833 3042 - . gene_id "HUERSP2_3q26.1a"; transcript_id "HUERSP2_3q26.1a"; locus "HUERSP2_3q26.1a"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0033"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "128"; repStart "0"; ### HERVS71_3q26.1 ### chr3 rmsk gene 164334009 164341897 . - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0011"; model_cov "6938"; model_pct "77.3"; chr3 rmsk exon 164334009 164334492 3417 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "1"; repStart "-28"; chr3 rmsk exon 164334493 164337259 14153 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "6070"; repStart "-69"; chr3 rmsk exon 164337259 164338130 6264 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "5673"; repFamily "ERV1"; repLeft "4803"; repStart "-3305"; chr3 rmsk exon 164338114 164339466 22968 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "3235"; repFamily "ERV1"; repLeft "1858"; repStart "-5743"; chr3 rmsk exon 164339497 164341383 22968 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "1857"; repFamily "ERV1"; repLeft "5"; repStart "-7121"; chr3 rmsk exon 164341387 164341897 3568 - . gene_id "HERVS71_3q26.1"; transcript_id "HERVS71_3q26.1"; locus "HERVS71_3q26.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0011"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_3q26.1f ### chr3 rmsk gene 164342181 164347849 . - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0315"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 164342181 164342589 2606 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 164342590 164342946 2194 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 164342945 164343165 1324 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 164343163 164343822 4336 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 164343825 164344326 3270 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 164344317 164344464 903 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 164344459 164347438 20197 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 164347441 164347849 2831 - . gene_id "HERVH_3q26.1f"; transcript_id "HERVH_3q26.1f"; locus "HERVH_3q26.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0315"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_3q26.1d ### chr3 rmsk gene 164347871 164349294 . - . gene_id "MER4_3q26.1d"; transcript_id "MER4_3q26.1d"; locus "MER4_3q26.1d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0172"; model_cov "1042"; model_pct "15.8"; chr3 rmsk exon 164347871 164348092 1117 - . gene_id "MER4_3q26.1d"; transcript_id "MER4_3q26.1d"; locus "MER4_3q26.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0172"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "865"; repStart "-5502"; chr3 rmsk exon 164348187 164348860 2284 - . gene_id "MER4_3q26.1d"; transcript_id "MER4_3q26.1d"; locus "MER4_3q26.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0172"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "1"; repStart "-5786"; chr3 rmsk exon 164348864 164349294 2510 - . gene_id "MER4_3q26.1d"; transcript_id "MER4_3q26.1d"; locus "MER4_3q26.1d"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0172"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_3q26.1e ### chr3 rmsk gene 164465468 164469980 . + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0173"; model_cov "3383"; model_pct "51.3"; chr3 rmsk exon 164465468 164465939 3093 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0173"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 164465943 164466154 1881 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0173"; repClass "LTR"; repEnd "228"; repFamily "ERV1"; repLeft "-6370"; repStart "1"; chr3 rmsk exon 164466424 164466552 1881 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0173"; repClass "LTR"; repEnd "351"; repFamily "ERV1"; repLeft "-6247"; repStart "229"; chr3 rmsk exon 164466564 164466838 831 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0173"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3407"; chr3 rmsk exon 164466838 164469504 15174 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0173"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "3837"; chr3 rmsk exon 164469509 164469980 2999 + . gene_id "MER4_3q26.1e"; transcript_id "MER4_3q26.1e"; locus "MER4_3q26.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0173"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3q26.1g ### chr3 rmsk gene 164525052 164526566 . - . gene_id "ERVLE_3q26.1g"; transcript_id "ERVLE_3q26.1g"; locus "ERVLE_3q26.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0870"; model_cov "1131"; model_pct "20.0"; chr3 rmsk exon 164525052 164525259 405 - . gene_id "ERVLE_3q26.1g"; transcript_id "ERVLE_3q26.1g"; locus "ERVLE_3q26.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0870"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "2782"; repStart "-2676"; chr3 rmsk exon 164525328 164525937 1313 - . gene_id "ERVLE_3q26.1g"; transcript_id "ERVLE_3q26.1g"; locus "ERVLE_3q26.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0870"; repClass "LTR"; repEnd "2665"; repFamily "ERVL"; repLeft "2035"; repStart "-3002"; chr3 rmsk exon 164526285 164526566 814 - . gene_id "ERVLE_3q26.1g"; transcript_id "ERVLE_3q26.1g"; locus "ERVLE_3q26.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0870"; repClass "LTR"; repEnd "1582"; repFamily "ERVL"; repLeft "1290"; repStart "-4085"; ### ERV316A3_3q26.1d ### chr3 rmsk gene 164541991 164543514 . + . gene_id "ERV316A3_3q26.1d"; transcript_id "ERV316A3_3q26.1d"; locus "ERV316A3_3q26.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0577"; model_cov "1495"; model_pct "28.6"; chr3 rmsk exon 164541991 164543254 1930 + . gene_id "ERV316A3_3q26.1d"; transcript_id "ERV316A3_3q26.1d"; locus "ERV316A3_3q26.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0577"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "-1852"; repStart "2129"; chr3 rmsk exon 164543273 164543514 542 + . gene_id "ERV316A3_3q26.1d"; transcript_id "ERV316A3_3q26.1d"; locus "ERV316A3_3q26.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0577"; repClass "LTR"; repEnd "3701"; repFamily "ERVL"; repLeft "-1525"; repStart "3451"; ### MER34B_3q26.1 ### chr3 rmsk gene 164626954 164628462 . + . gene_id "MER34B_3q26.1"; transcript_id "MER34B_3q26.1"; locus "MER34B_3q26.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0083"; model_cov "860"; model_pct "16.1"; chr3 rmsk exon 164626954 164627362 887 + . gene_id "MER34B_3q26.1"; transcript_id "MER34B_3q26.1"; locus "MER34B_3q26.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0083"; repClass "LTR"; repEnd "-2190"; repFamily "ERV1"; repLeft "-7546"; repStart "-2810"; chr3 rmsk exon 164627908 164628020 702 + . gene_id "MER34B_3q26.1"; transcript_id "MER34B_3q26.1"; locus "MER34B_3q26.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0083"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-4797"; repStart "451"; chr3 rmsk exon 164628320 164628462 702 + . gene_id "MER34B_3q26.1"; transcript_id "MER34B_3q26.1"; locus "MER34B_3q26.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0083"; repClass "LTR"; repEnd "692"; repFamily "ERV1"; repLeft "-4664"; repStart "560"; ### MER41_3q26.1b ### chr3 rmsk gene 164951685 164952565 . + . gene_id "MER41_3q26.1b"; transcript_id "MER41_3q26.1b"; locus "MER41_3q26.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0107"; model_cov "899"; model_pct "15.1"; chr3 rmsk exon 164951685 164951900 1344 + . gene_id "MER41_3q26.1b"; transcript_id "MER41_3q26.1b"; locus "MER41_3q26.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0107"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "-5102"; repStart "605"; chr3 rmsk exon 164951937 164952565 3499 + . gene_id "MER41_3q26.1b"; transcript_id "MER41_3q26.1b"; locus "MER41_3q26.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0107"; repClass "LTR"; repEnd "1606"; repFamily "ERV1"; repLeft "-4340"; repStart "946"; ### MER101_3q26.1 ### chr3 rmsk gene 165242566 165246773 . - . gene_id "MER101_3q26.1"; transcript_id "MER101_3q26.1"; locus "MER101_3q26.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0107"; model_cov "3397"; model_pct "51.2"; chr3 rmsk exon 165242566 165243011 2009 - . gene_id "MER101_3q26.1"; transcript_id "MER101_3q26.1"; locus "MER101_3q26.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0107"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 165243012 165246773 3786 - . gene_id "MER101_3q26.1"; transcript_id "MER101_3q26.1"; locus "MER101_3q26.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0107"; repClass "LTR"; repEnd "5425"; repFamily "ERV1"; repLeft "2028"; repStart "-1214"; ### HERVL_3q26.1e ### chr3 rmsk gene 165530215 165532275 . - . gene_id "HERVL_3q26.1e"; transcript_id "HERVL_3q26.1e"; locus "HERVL_3q26.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0318"; model_cov "1642"; model_pct "29.0"; chr3 rmsk exon 165530215 165531831 12633 - . gene_id "HERVL_3q26.1e"; transcript_id "HERVL_3q26.1e"; locus "HERVL_3q26.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0318"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "1"; repStart "-4011"; chr3 rmsk exon 165531832 165532275 3080 - . gene_id "HERVL_3q26.1e"; transcript_id "HERVL_3q26.1e"; locus "HERVL_3q26.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0318"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVK11D_3q26.1 ### chr3 rmsk gene 165546697 165548895 . + . gene_id "HERVK11D_3q26.1"; transcript_id "HERVK11D_3q26.1"; locus "HERVK11D_3q26.1"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0007"; model_cov "1306"; model_pct "16.8"; chr3 rmsk exon 165546697 165546742 357 + . gene_id "HERVK11D_3q26.1"; transcript_id "HERVK11D_3q26.1"; locus "HERVK11D_3q26.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0007"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-851"; repStart "1"; chr3 rmsk exon 165546743 165548053 10694 + . gene_id "HERVK11D_3q26.1"; transcript_id "HERVK11D_3q26.1"; locus "HERVK11D_3q26.1"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0007"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "6446"; chr3 rmsk exon 165548054 165548895 6438 + . gene_id "HERVK11D_3q26.1"; transcript_id "HERVK11D_3q26.1"; locus "HERVK11D_3q26.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0007"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP2_3q26.1b ### chr3 rmsk gene 165713823 165714240 . - . gene_id "HUERSP2_3q26.1b"; transcript_id "HUERSP2_3q26.1b"; locus "HUERSP2_3q26.1b"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0034"; model_cov "414"; model_pct "13.4"; chr3 rmsk exon 165713823 165714240 1758 - . gene_id "HUERSP2_3q26.1b"; transcript_id "HUERSP2_3q26.1b"; locus "HUERSP2_3q26.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0034"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "2672"; repStart "-2"; ### ERVL_3q26.1b ### chr3 rmsk gene 165740633 165744816 . + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0091"; model_cov "3569"; model_pct "62.0"; chr3 rmsk exon 165740633 165741137 2783 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-39"; repStart "2"; chr3 rmsk exon 165741203 165741231 2783 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "545"; repFamily "ERVL"; repLeft "-9"; repStart "516"; chr3 rmsk exon 165741237 165742184 4115 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "1027"; repFamily "ERVL"; repLeft "-4730"; repStart "45"; chr3 rmsk exon 165742185 165742835 3235 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "1858"; repFamily "ERVL"; repLeft "-3899"; repStart "1189"; chr3 rmsk exon 165742853 165744761 10854 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "3966"; repFamily "ERVL"; repLeft "-1791"; repStart "2048"; chr3 rmsk exon 165744763 165744816 251 + . gene_id "ERVL_3q26.1b"; transcript_id "ERVL_3q26.1b"; locus "ERVL_3q26.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0091"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-2"; repStart "499"; ### ERV316A3_3q26.1e ### chr3 rmsk gene 165950308 165952219 . - . gene_id "ERV316A3_3q26.1e"; transcript_id "ERV316A3_3q26.1e"; locus "ERV316A3_3q26.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0580"; model_cov "1643"; model_pct "31.4"; chr3 rmsk exon 165950308 165950898 1824 - . gene_id "ERV316A3_3q26.1e"; transcript_id "ERV316A3_3q26.1e"; locus "ERV316A3_3q26.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0580"; repClass "LTR"; repEnd "2491"; repFamily "ERVL"; repLeft "1879"; repStart "-2735"; chr3 rmsk exon 165951200 165952219 1824 - . gene_id "ERV316A3_3q26.1e"; transcript_id "ERV316A3_3q26.1e"; locus "ERV316A3_3q26.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0580"; repClass "LTR"; repEnd "1878"; repFamily "ERVL"; repLeft "847"; repStart "-3348"; ### HERVL_3q26.1f ### chr3 rmsk gene 165997809 166003219 . - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0319"; model_cov "4407"; model_pct "77.9"; chr3 rmsk exon 165997809 165998129 2412 - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0319"; repClass "LTR"; repEnd "324"; repFamily "ERVL"; repLeft "1"; repStart "-120"; chr3 rmsk exon 165998130 165998424 11694 - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0319"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5363"; repStart "0"; chr3 rmsk exon 165998728 166000000 11694 - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0319"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "4085"; repStart "-292"; chr3 rmsk exon 166000001 166002818 21281 - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0319"; repClass "LTR"; repEnd "4084"; repFamily "ERVL"; repLeft "1245"; repStart "-1570"; chr3 rmsk exon 166002819 166003219 2941 - . gene_id "HERVL_3q26.1f"; transcript_id "HERVL_3q26.1f"; locus "HERVL_3q26.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0319"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "1"; repStart "-39"; ### ERVLE_3q26.1h ### chr3 rmsk gene 166173625 166174423 . - . gene_id "ERVLE_3q26.1h"; transcript_id "ERVLE_3q26.1h"; locus "ERVLE_3q26.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0871"; model_cov "742"; model_pct "13.1"; chr3 rmsk exon 166173625 166173951 873 - . gene_id "ERVLE_3q26.1h"; transcript_id "ERVLE_3q26.1h"; locus "ERVLE_3q26.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0871"; repClass "LTR"; repEnd "2442"; repFamily "ERVL"; repLeft "2126"; repStart "-3225"; chr3 rmsk exon 166174013 166174423 873 - . gene_id "ERVLE_3q26.1h"; transcript_id "ERVLE_3q26.1h"; locus "ERVLE_3q26.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0871"; repClass "LTR"; repEnd "2125"; repFamily "ERVL"; repLeft "1699"; repStart "-3542"; ### HERVL_3q26.1g ### chr3 rmsk gene 166347356 166353485 . - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0320"; model_cov "3565"; model_pct "63.1"; chr3 rmsk exon 166347356 166347856 1459 - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0320"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "62"; repStart "0"; chr3 rmsk exon 166347870 166348641 5056 - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0320"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "2908"; repStart "-1940"; chr3 rmsk exon 166350210 166351299 7446 - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0320"; repClass "LTR"; repEnd "2910"; repFamily "ERVL"; repLeft "1815"; repStart "-2744"; chr3 rmsk exon 166351270 166352933 10651 - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0320"; repClass "LTR"; repEnd "1665"; repFamily "ERVL"; repLeft "1"; repStart "-3989"; chr3 rmsk exon 166352934 166353485 1780 - . gene_id "HERVL_3q26.1g"; transcript_id "HERVL_3q26.1g"; locus "HERVL_3q26.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0320"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-98"; repStart "0"; ### ERV316A3_3q26.1f ### chr3 rmsk gene 166408782 166409944 . - . gene_id "ERV316A3_3q26.1f"; transcript_id "ERV316A3_3q26.1f"; locus "ERV316A3_3q26.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0582"; model_cov "1198"; model_pct "22.9"; chr3 rmsk exon 166408782 166409944 1278 - . gene_id "ERV316A3_3q26.1f"; transcript_id "ERV316A3_3q26.1f"; locus "ERV316A3_3q26.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0582"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "1733"; repStart "-2295"; ### ERVL_3q26.1c ### chr3 rmsk gene 166466567 166469506 . + . gene_id "ERVL_3q26.1c"; transcript_id "ERVL_3q26.1c"; locus "ERVL_3q26.1c"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0092"; model_cov "2625"; model_pct "45.6"; chr3 rmsk exon 166466567 166467337 3958 + . gene_id "ERVL_3q26.1c"; transcript_id "ERVL_3q26.1c"; locus "ERVL_3q26.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0092"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "-2384"; repStart "2592"; chr3 rmsk exon 166467342 166468653 8571 + . gene_id "ERVL_3q26.1c"; transcript_id "ERVL_3q26.1c"; locus "ERVL_3q26.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0092"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-521"; repStart "3829"; chr3 rmsk exon 166469036 166469506 8571 + . gene_id "ERVL_3q26.1c"; transcript_id "ERVL_3q26.1c"; locus "ERVL_3q26.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0092"; repClass "LTR"; repEnd "5674"; repFamily "ERVL"; repLeft "-83"; repStart "5237"; ### HERVH_3q26.1g ### chr3 rmsk gene 166500605 166506418 . - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0316"; model_cov "5269"; model_pct "68.3"; chr3 rmsk exon 166500605 166501003 2469 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 166501004 166501380 2254 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 166501381 166501595 1385 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 166501597 166502265 4440 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4480"; repStart "-2564"; chr3 rmsk exon 166502262 166506017 16204 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr3 rmsk exon 166506020 166506418 2430 - . gene_id "HERVH_3q26.1g"; transcript_id "HERVH_3q26.1g"; locus "HERVH_3q26.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0316"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_3q26.1g ### chr3 rmsk gene 166549600 166554725 . - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0583"; model_cov "3526"; model_pct "67.5"; chr3 rmsk exon 166549600 166550064 1247 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "4700"; repFamily "ERVL"; repLeft "4224"; repStart "-526"; chr3 rmsk exon 166550623 166551223 1372 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "4228"; repFamily "ERVL"; repLeft "3601"; repStart "-998"; chr3 rmsk exon 166551264 166551358 305 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "3193"; repStart "-1939"; chr3 rmsk exon 166551504 166552259 2891 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "2146"; repStart "-2327"; chr3 rmsk exon 166552566 166553601 2891 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "2145"; repFamily "ERVL"; repLeft "1066"; repStart "-3081"; chr3 rmsk exon 166554136 166554272 561 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "1058"; repFamily "ERVL"; repLeft "913"; repStart "-4168"; chr3 rmsk exon 166554405 166554725 574 - . gene_id "ERV316A3_3q26.1g"; transcript_id "ERV316A3_3q26.1g"; locus "ERV316A3_3q26.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0583"; repClass "LTR"; repEnd "900"; repFamily "ERVL"; repLeft "548"; repStart "-4326"; ### ERV316A3_3q26.1h ### chr3 rmsk gene 166703835 166705126 . - . gene_id "ERV316A3_3q26.1h"; transcript_id "ERV316A3_3q26.1h"; locus "ERV316A3_3q26.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0585"; model_cov "834"; model_pct "16.0"; chr3 rmsk exon 166703835 166704197 994 - . gene_id "ERV316A3_3q26.1h"; transcript_id "ERV316A3_3q26.1h"; locus "ERV316A3_3q26.1h"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0585"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "0"; repStart "-104"; chr3 rmsk exon 166704205 166705126 1830 - . gene_id "ERV316A3_3q26.1h"; transcript_id "ERV316A3_3q26.1h"; locus "ERV316A3_3q26.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0585"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4002"; repStart "-390"; ### HERVH_3q26.1h ### chr3 rmsk gene 166822581 166829713 . - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0317"; model_cov "6397"; model_pct "82.9"; chr3 rmsk exon 166822581 166823009 3312 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 166823010 166825125 16008 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "5600"; repStart "0"; chr3 rmsk exon 166825130 166825790 4319 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr3 rmsk exon 166825793 166826286 3464 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr3 rmsk exon 166826285 166826429 837 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "3140"; repStart "-4426"; chr3 rmsk exon 166826424 166829296 14729 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 166829299 166829713 3001 - . gene_id "HERVH_3q26.1h"; transcript_id "HERVH_3q26.1h"; locus "HERVH_3q26.1h"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0317"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_3q26.1h ### chr3 rmsk gene 166886803 166889941 . - . gene_id "HERVL_3q26.1h"; transcript_id "HERVL_3q26.1h"; locus "HERVL_3q26.1h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0321"; model_cov "2636"; model_pct "46.6"; chr3 rmsk exon 166886803 166887238 3498 - . gene_id "HERVL_3q26.1h"; transcript_id "HERVL_3q26.1h"; locus "HERVL_3q26.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0321"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 166887239 166889874 19252 - . gene_id "HERVL_3q26.1h"; transcript_id "HERVL_3q26.1h"; locus "HERVL_3q26.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0321"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3018"; repStart "0"; chr3 rmsk exon 166889876 166889941 561 - . gene_id "HERVL_3q26.1h"; transcript_id "HERVL_3q26.1h"; locus "HERVL_3q26.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0321"; repClass "LTR"; repEnd "66"; repFamily "ERVL"; repLeft "1"; repStart "-378"; ### HERVL_3q26.1i ### chr3 rmsk gene 166987952 166990625 . - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0322"; model_cov "1826"; model_pct "32.3"; chr3 rmsk exon 166987952 166988289 1676 - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0322"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "-33"; chr3 rmsk exon 166988290 166988414 737 - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0322"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5522"; repStart "0"; chr3 rmsk exon 166988413 166989068 5234 - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0322"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2102"; repStart "-2897"; chr3 rmsk exon 166989067 166990107 7981 - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0322"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "1"; repStart "-4614"; chr3 rmsk exon 166990108 166990625 2954 - . gene_id "HERVL_3q26.1i"; transcript_id "HERVL_3q26.1i"; locus "HERVL_3q26.1i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0322"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP2_3q26.1c ### chr3 rmsk gene 166994414 166995592 . - . gene_id "HUERSP2_3q26.1c"; transcript_id "HUERSP2_3q26.1c"; locus "HUERSP2_3q26.1c"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0035"; model_cov "335"; model_pct "10.8"; chr3 rmsk exon 166994414 166995228 4065 - . gene_id "HUERSP2_3q26.1c"; transcript_id "HUERSP2_3q26.1c"; locus "HUERSP2_3q26.1c"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0035"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 166995229 166995444 1743 - . gene_id "HUERSP2_3q26.1c"; transcript_id "HUERSP2_3q26.1c"; locus "HUERSP2_3q26.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0035"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2870"; repStart "0"; chr3 rmsk exon 166995472 166995592 1743 - . gene_id "HUERSP2_3q26.1c"; transcript_id "HUERSP2_3q26.1c"; locus "HUERSP2_3q26.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0035"; repClass "LTR"; repEnd "2869"; repFamily "ERV1"; repLeft "2752"; repStart "-219"; ### HUERSP2_3q26.1d ### chr3 rmsk gene 167000001 167002931 . - . gene_id "HUERSP2_3q26.1d"; transcript_id "HUERSP2_3q26.1d"; locus "HUERSP2_3q26.1d"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0036"; model_cov "1975"; model_pct "64.0"; chr3 rmsk exon 167000001 167001330 7667 - . gene_id "HUERSP2_3q26.1d"; transcript_id "HUERSP2_3q26.1d"; locus "HUERSP2_3q26.1d"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0036"; repClass "LTR"; repEnd "2179"; repFamily "ERV1"; repLeft "952"; repStart "-909"; chr3 rmsk exon 167001532 167001908 1006 - . gene_id "HUERSP2_3q26.1d"; transcript_id "HUERSP2_3q26.1d"; locus "HUERSP2_3q26.1d"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0036"; repClass "LTR"; repEnd "576"; repFamily "ERV1"; repLeft "210"; repStart "-2512"; chr3 rmsk exon 167001937 167002171 720 - . gene_id "HUERSP2_3q26.1d"; transcript_id "HUERSP2_3q26.1d"; locus "HUERSP2_3q26.1d"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0036"; repClass "LTR"; repEnd "-5447"; repFamily "ERV1"; repLeft "-5829"; repStart "-8535"; chr3 rmsk exon 167002173 167002931 3880 - . gene_id "HUERSP2_3q26.1d"; transcript_id "HUERSP2_3q26.1d"; locus "HUERSP2_3q26.1d"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0036"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_3q26.1 ### chr3 rmsk gene 167101461 167103323 . + . gene_id "HERVL40_3q26.1"; transcript_id "HERVL40_3q26.1"; locus "HERVL40_3q26.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0083"; model_cov "1302"; model_pct "23.5"; chr3 rmsk exon 167101461 167101974 1458 + . gene_id "HERVL40_3q26.1"; transcript_id "HERVL40_3q26.1"; locus "HERVL40_3q26.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0083"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr3 rmsk exon 167101991 167102890 2963 + . gene_id "HERVL40_3q26.1"; transcript_id "HERVL40_3q26.1"; locus "HERVL40_3q26.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0083"; repClass "LTR"; repEnd "889"; repFamily "ERVL"; repLeft "-4641"; repStart "17"; chr3 rmsk exon 167102926 167103323 2963 + . gene_id "HERVL40_3q26.1"; transcript_id "HERVL40_3q26.1"; locus "HERVL40_3q26.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0083"; repClass "LTR"; repEnd "1320"; repFamily "ERVL"; repLeft "-4210"; repStart "890"; ### HML3_3q26.1a ### chr3 rmsk gene 167176901 167182593 . - . gene_id "HML3_3q26.1a"; transcript_id "HML3_3q26.1a"; locus "HML3_3q26.1a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0047"; model_cov "5398"; model_pct "89.7"; chr3 rmsk exon 167176901 167177283 2538 - . gene_id "HML3_3q26.1a"; transcript_id "HML3_3q26.1a"; locus "HML3_3q26.1a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0047"; repClass "LTR"; repEnd "419"; repFamily "ERVK"; repLeft "1"; repStart "-93"; chr3 rmsk exon 167177284 167182593 28999 - . gene_id "HML3_3q26.1a"; transcript_id "HML3_3q26.1a"; locus "HML3_3q26.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0047"; repClass "LTR"; repEnd "4771"; repFamily "ERVK"; repLeft "-627"; repStart "-1250"; ### HML3_3q26.1b ### chr3 rmsk gene 167182651 167183906 . - . gene_id "HML3_3q26.1b"; transcript_id "HML3_3q26.1b"; locus "HML3_3q26.1b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0048"; model_cov "784"; model_pct "13.0"; chr3 rmsk exon 167182651 167183421 28999 - . gene_id "HML3_3q26.1b"; transcript_id "HML3_3q26.1b"; locus "HML3_3q26.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0048"; repClass "LTR"; repEnd "4771"; repFamily "ERVK"; repLeft "3987"; repStart "-1250"; chr3 rmsk exon 167183422 167183906 3208 - . gene_id "HML3_3q26.1b"; transcript_id "HML3_3q26.1b"; locus "HML3_3q26.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0048"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_3q26.1e ### chr3 rmsk gene 167246985 167251569 . + . gene_id "HUERSP2_3q26.1e"; transcript_id "HUERSP2_3q26.1e"; locus "HUERSP2_3q26.1e"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0037"; model_cov "2955"; model_pct "95.7"; chr3 rmsk exon 167246985 167247777 4446 + . gene_id "HUERSP2_3q26.1e"; transcript_id "HUERSP2_3q26.1e"; locus "HUERSP2_3q26.1e"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0037"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "41"; chr3 rmsk exon 167247820 167247901 338 + . gene_id "HUERSP2_3q26.1e"; transcript_id "HUERSP2_3q26.1e"; locus "HUERSP2_3q26.1e"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0037"; repClass "LTR"; repEnd "122"; repFamily "ERV1"; repLeft "-2966"; repStart "42"; chr3 rmsk exon 167247919 167250747 15959 + . gene_id "HUERSP2_3q26.1e"; transcript_id "HUERSP2_3q26.1e"; locus "HUERSP2_3q26.1e"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0037"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "-3"; repStart "210"; chr3 rmsk exon 167250748 167251569 4397 + . gene_id "HUERSP2_3q26.1e"; transcript_id "HUERSP2_3q26.1e"; locus "HUERSP2_3q26.1e"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0037"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "42"; ### HERVIP10F_3q26.1 ### chr3 rmsk gene 167266302 167275022 . + . gene_id "HERVIP10F_3q26.1"; transcript_id "HERVIP10F_3q26.1"; locus "HERVIP10F_3q26.1"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0034"; model_cov "7734"; model_pct "100.0"; chr3 rmsk exon 167266302 167266809 2945 + . gene_id "HERVIP10F_3q26.1"; transcript_id "HERVIP10F_3q26.1"; locus "HERVIP10F_3q26.1"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0034"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "-85"; chr3 rmsk exon 167266810 167274513 37852 + . gene_id "HERVIP10F_3q26.1"; transcript_id "HERVIP10F_3q26.1"; locus "HERVIP10F_3q26.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0034"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 167274515 167275022 3033 + . gene_id "HERVIP10F_3q26.1"; transcript_id "HERVIP10F_3q26.1"; locus "HERVIP10F_3q26.1"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0034"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "-85"; ### ERVLE_3q26.1i ### chr3 rmsk gene 167324426 167325120 . - . gene_id "ERVLE_3q26.1i"; transcript_id "ERVLE_3q26.1i"; locus "ERVLE_3q26.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0873"; model_cov "570"; model_pct "10.1"; chr3 rmsk exon 167324426 167324713 338 - . gene_id "ERVLE_3q26.1i"; transcript_id "ERVLE_3q26.1i"; locus "ERVLE_3q26.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0873"; repClass "LTR"; repEnd "1726"; repFamily "ERVL"; repLeft "1417"; repStart "-3941"; chr3 rmsk exon 167324861 167325120 418 - . gene_id "ERVLE_3q26.1i"; transcript_id "ERVLE_3q26.1i"; locus "ERVLE_3q26.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0873"; repClass "LTR"; repEnd "1194"; repFamily "ERVL"; repLeft "933"; repStart "-4473"; ### HERVH_3q26.1i ### chr3 rmsk gene 167422393 167431175 . + . gene_id "HERVH_3q26.1i"; transcript_id "HERVH_3q26.1i"; locus "HERVH_3q26.1i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0318"; model_cov "7712"; model_pct "100.0"; chr3 rmsk exon 167422393 167422843 2977 + . gene_id "HERVH_3q26.1i"; transcript_id "HERVH_3q26.1i"; locus "HERVH_3q26.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0318"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 167422846 167430783 26389 + . gene_id "HERVH_3q26.1i"; transcript_id "HERVH_3q26.1i"; locus "HERVH_3q26.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0318"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 167430786 167431175 2116 + . gene_id "HERVH_3q26.1i"; transcript_id "HERVH_3q26.1i"; locus "HERVH_3q26.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0318"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "4"; ### HERVH_3q26.1j ### chr3 rmsk gene 167431286 167437130 . + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0319"; model_cov "5118"; model_pct "66.4"; chr3 rmsk exon 167431286 167431677 2437 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "439"; repFamily "ERV1"; repLeft "-11"; repStart "1"; chr3 rmsk exon 167431689 167434637 16756 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 167434617 167435469 6155 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr3 rmsk exon 167435472 167436134 4493 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 167436136 167436351 1357 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 167436350 167436728 2322 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 167436729 167437130 2489 + . gene_id "HERVH_3q26.1j"; transcript_id "HERVH_3q26.1j"; locus "HERVH_3q26.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0319"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_3q26.2a ### chr3 rmsk gene 167991271 167992379 . - . gene_id "ERV316A3_3q26.2a"; transcript_id "ERV316A3_3q26.2a"; locus "ERV316A3_3q26.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0586"; model_cov "1114"; model_pct "21.3"; chr3 rmsk exon 167991271 167992010 1667 - . gene_id "ERV316A3_3q26.2a"; transcript_id "ERV316A3_3q26.2a"; locus "ERV316A3_3q26.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0586"; repClass "LTR"; repEnd "3040"; repFamily "ERVL"; repLeft "2305"; repStart "-2186"; chr3 rmsk exon 167992038 167992379 662 - . gene_id "ERV316A3_3q26.2a"; transcript_id "ERV316A3_3q26.2a"; locus "ERV316A3_3q26.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0586"; repClass "LTR"; repEnd "1872"; repFamily "ERVL"; repLeft "1493"; repStart "-3354"; ### ERVLB4_3q26.2a ### chr3 rmsk gene 168107756 168112455 . - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0383"; model_cov "3295"; model_pct "57.7"; chr3 rmsk exon 168107756 168108243 1521 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr3 rmsk exon 168108244 168108343 566 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5613"; repStart "0"; chr3 rmsk exon 168108423 168109698 6622 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "5533"; repFamily "ERVL"; repLeft "4289"; repStart "-181"; chr3 rmsk exon 168109776 168110012 1566 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "2062"; repFamily "ERVL"; repLeft "1823"; repStart "-3652"; chr3 rmsk exon 168110018 168111640 9181 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "1713"; repFamily "ERVL"; repLeft "88"; repStart "-4001"; chr3 rmsk exon 168111994 168112080 5325 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "87"; repFamily "ERVL"; repLeft "1"; repStart "-5627"; chr3 rmsk exon 168112081 168112367 1098 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "260"; repStart "0"; chr3 rmsk exon 168112373 168112455 458 - . gene_id "ERVLB4_3q26.2a"; transcript_id "ERVLB4_3q26.2a"; locus "ERVLB4_3q26.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0383"; repClass "LTR"; repEnd "85"; repFamily "ERVL"; repLeft "3"; repStart "-471"; ### ERVLB4_3q26.2b ### chr3 rmsk gene 168514124 168515453 . - . gene_id "ERVLB4_3q26.2b"; transcript_id "ERVLB4_3q26.2b"; locus "ERVLB4_3q26.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0385"; model_cov "909"; model_pct "15.9"; chr3 rmsk exon 168514124 168514587 1840 - . gene_id "ERVLB4_3q26.2b"; transcript_id "ERVLB4_3q26.2b"; locus "ERVLB4_3q26.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0385"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 168514588 168515453 4447 - . gene_id "ERVLB4_3q26.2b"; transcript_id "ERVLB4_3q26.2b"; locus "ERVLB4_3q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0385"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4805"; repStart "0"; ### HERVH_3q26.2a ### chr3 rmsk gene 168930920 168933315 . - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0320"; model_cov "1633"; model_pct "21.2"; chr3 rmsk exon 168930920 168931280 2109 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 168931281 168931818 3435 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr3 rmsk exon 168931873 168932065 1187 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6756"; repStart "-765"; chr3 rmsk exon 168932047 168932769 4389 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "5108"; repStart "-1873"; chr3 rmsk exon 168932769 168932938 1140 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "4812"; repFamily "ERV1"; repLeft "4643"; repStart "-2901"; chr3 rmsk exon 168932955 168933315 2074 - . gene_id "HERVH_3q26.2a"; transcript_id "HERVH_3q26.2a"; locus "HERVH_3q26.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0320"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_3q26.2b ### chr3 rmsk gene 169058099 169063587 . + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0587"; model_cov "3125"; model_pct "59.8"; chr3 rmsk exon 169058099 169058362 794 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-12"; repStart "179"; chr3 rmsk exon 169058369 169058550 795 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-4816"; repStart "232"; chr3 rmsk exon 169059059 169059590 1486 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "1003"; repFamily "ERVL"; repLeft "-4223"; repStart "411"; chr3 rmsk exon 169060135 169060726 1486 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "1655"; repFamily "ERVL"; repLeft "-3571"; repStart "1004"; chr3 rmsk exon 169060867 169061240 1051 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "2610"; repFamily "ERVL"; repLeft "-2616"; repStart "2238"; chr3 rmsk exon 169061583 169062891 3579 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "3845"; chr3 rmsk exon 169063311 169063587 920 + . gene_id "ERV316A3_3q26.2b"; transcript_id "ERV316A3_3q26.2b"; locus "ERV316A3_3q26.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0587"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "143"; ### HML5_3q26.2 ### chr3 rmsk gene 170077412 170079290 . + . gene_id "HML5_3q26.2"; transcript_id "HML5_3q26.2"; locus "HML5_3q26.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0027"; model_cov "1012"; model_pct "14.8"; chr3 rmsk exon 170077412 170077864 2731 + . gene_id "HML5_3q26.2"; transcript_id "HML5_3q26.2"; locus "HML5_3q26.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0027"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 170077867 170078720 2962 + . gene_id "HML5_3q26.2"; transcript_id "HML5_3q26.2"; locus "HML5_3q26.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0027"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "-5932"; repStart "3"; chr3 rmsk exon 170078726 170078831 694 + . gene_id "HML5_3q26.2"; transcript_id "HML5_3q26.2"; locus "HML5_3q26.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0027"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "6727"; chr3 rmsk exon 170078835 170079290 2845 + . gene_id "HML5_3q26.2"; transcript_id "HML5_3q26.2"; locus "HML5_3q26.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0027"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "7"; ### HUERSP1_3q26.2 ### chr3 rmsk gene 170316558 170319856 . - . gene_id "HUERSP1_3q26.2"; transcript_id "HUERSP1_3q26.2"; locus "HUERSP1_3q26.2"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0052"; model_cov "2839"; model_pct "45.3"; chr3 rmsk exon 170316558 170318591 10995 - . gene_id "HUERSP1_3q26.2"; transcript_id "HUERSP1_3q26.2"; locus "HUERSP1_3q26.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0052"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "1151"; repStart "-3120"; chr3 rmsk exon 170318569 170318614 3913 - . gene_id "HUERSP1_3q26.2"; transcript_id "HUERSP1_3q26.2"; locus "HUERSP1_3q26.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0052"; repClass "LTR"; repEnd "1167"; repFamily "ERV1"; repLeft "1131"; repStart "-5096"; chr3 rmsk exon 170318917 170319486 3913 - . gene_id "HUERSP1_3q26.2"; transcript_id "HUERSP1_3q26.2"; locus "HUERSP1_3q26.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0052"; repClass "LTR"; repEnd "1130"; repFamily "ERV1"; repLeft "446"; repStart "-5133"; chr3 rmsk exon 170319730 170319856 966 - . gene_id "HUERSP1_3q26.2"; transcript_id "HUERSP1_3q26.2"; locus "HUERSP1_3q26.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0052"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "318"; repStart "-5818"; ### PABLA_3q26.2 ### chr3 rmsk gene 170335463 170342401 . - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0028"; model_cov "5649"; model_pct "100.0"; chr3 rmsk exon 170335463 170335778 13378 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "4691"; repStart "-1"; chr3 rmsk exon 170336082 170336294 13378 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "4690"; repFamily "ERV1"; repLeft "4489"; repStart "-325"; chr3 rmsk exon 170336593 170336825 13721 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "4564"; repFamily "ERV1"; repLeft "4377"; repStart "-451"; chr3 rmsk exon 170337137 170339387 13721 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "4267"; repFamily "ERV1"; repLeft "1278"; repStart "-748"; chr3 rmsk exon 170339675 170339834 13378 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "1941"; repFamily "ERV1"; repLeft "1804"; repStart "-3074"; chr3 rmsk exon 170340426 170341592 13378 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "1803"; repFamily "ERV1"; repLeft "436"; repStart "-3212"; chr3 rmsk exon 170341896 170342401 6560 - . gene_id "PABLA_3q26.2"; transcript_id "PABLA_3q26.2"; locus "PABLA_3q26.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0028"; repClass "LTR"; repEnd "-1156"; repFamily "ERV1"; repLeft "-1601"; repStart "-6171"; ### HERVH_3q26.2b ### chr3 rmsk gene 170672177 170678262 . - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0321"; model_cov "5261"; model_pct "68.2"; chr3 rmsk exon 170672177 170672587 2732 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 170672588 170672965 2426 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 170672966 170673182 1358 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 170673184 170673841 4332 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 170673844 170677848 28002 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr3 rmsk exon 170677851 170678262 2747 - . gene_id "HERVH_3q26.2b"; transcript_id "HERVH_3q26.2b"; locus "HERVH_3q26.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0321"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q26.2c ### chr3 rmsk gene 170681758 170689306 . - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0322"; model_cov "6411"; model_pct "83.1"; chr3 rmsk exon 170681758 170682257 3363 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 170682258 170684359 16473 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "5600"; repStart "0"; chr3 rmsk exon 170684361 170685023 4497 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 170685026 170685528 3319 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 170685519 170685664 880 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 170685659 170688804 17426 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 170688807 170689306 3345 - . gene_id "HERVH_3q26.2c"; transcript_id "HERVH_3q26.2c"; locus "HERVH_3q26.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0322"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q26.2d ### chr3 rmsk gene 170817615 170823761 . - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0323"; model_cov "5263"; model_pct "68.2"; chr3 rmsk exon 170817615 170818016 2647 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "439"; repFamily "ERV1"; repLeft "1"; repStart "-11"; chr3 rmsk exon 170818017 170818395 2430 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 170818394 170818610 1424 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 170818612 170819274 4545 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 170819277 170823353 24029 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr3 rmsk exon 170823356 170823761 2960 - . gene_id "HERVH_3q26.2d"; transcript_id "HERVH_3q26.2d"; locus "HERVH_3q26.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0323"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML4_3q26.2 ### chr3 rmsk gene 170858678 170861080 . + . gene_id "HML4_3q26.2"; transcript_id "HML4_3q26.2"; locus "HML4_3q26.2"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0007"; model_cov "1388"; model_pct "17.1"; chr3 rmsk exon 170858678 170860076 6236 + . gene_id "HML4_3q26.2"; transcript_id "HML4_3q26.2"; locus "HML4_3q26.2"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0007"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "0"; repStart "6728"; chr3 rmsk exon 170860077 170861080 8182 + . gene_id "HML4_3q26.2"; transcript_id "HML4_3q26.2"; locus "HML4_3q26.2"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0007"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_3q26.2 ### chr3 rmsk gene 170901934 170903659 . + . gene_id "ERVLE_3q26.2"; transcript_id "ERVLE_3q26.2"; locus "ERVLE_3q26.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0875"; model_cov "934"; model_pct "16.5"; chr3 rmsk exon 170901934 170902282 1039 + . gene_id "ERVLE_3q26.2"; transcript_id "ERVLE_3q26.2"; locus "ERVLE_3q26.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0875"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "-2051"; repStart "3263"; chr3 rmsk exon 170902942 170903659 1192 + . gene_id "ERVLE_3q26.2"; transcript_id "ERVLE_3q26.2"; locus "ERVLE_3q26.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0875"; repClass "LTR"; repEnd "5111"; repFamily "ERVL"; repLeft "-556"; repStart "4530"; ### ERVLB4_3q26.31a ### chr3 rmsk gene 171530290 171538018 . - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0386"; model_cov "4491"; model_pct "78.6"; chr3 rmsk exon 171530290 171530763 2052 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 171530912 171531240 13475 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5221"; repStart "0"; chr3 rmsk exon 171531539 171532773 13475 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "3999"; repStart "-494"; chr3 rmsk exon 171532774 171532883 4142 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "639"; repStart "0"; chr3 rmsk exon 171532943 171533580 4142 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "3"; repStart "-79"; chr3 rmsk exon 171533581 171534136 13475 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "3998"; repFamily "ERVL"; repLeft "3442"; repStart "-1716"; chr3 rmsk exon 171534654 171535963 8540 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "3440"; repFamily "ERVL"; repLeft "2081"; repStart "-2274"; chr3 rmsk exon 171536147 171536241 1093 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "2158"; repFamily "ERVL"; repLeft "2050"; repStart "-3556"; chr3 rmsk exon 171536564 171536664 1093 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "2049"; repFamily "ERVL"; repLeft "1949"; repStart "-3665"; chr3 rmsk exon 171537370 171537842 1093 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "1948"; repFamily "ERVL"; repLeft "1450"; repStart "-3766"; chr3 rmsk exon 171537879 171538018 376 - . gene_id "ERVLB4_3q26.31a"; transcript_id "ERVLB4_3q26.31a"; locus "ERVLB4_3q26.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0386"; repClass "LTR"; repEnd "713"; repFamily "ERVL"; repLeft "557"; repStart "-5001"; ### HERVH_3q26.31a ### chr3 rmsk gene 171576684 171582157 . + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0324"; model_cov "4906"; model_pct "63.6"; chr3 rmsk exon 171576684 171576788 849 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "368"; chr3 rmsk exon 171576789 171579821 19152 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 171579816 171579963 860 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 171579954 171580453 3087 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 171580456 171581126 3944 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 171581128 171581345 1288 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 171581346 171581723 2425 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 171581725 171582157 2639 + . gene_id "HERVH_3q26.31a"; transcript_id "HERVH_3q26.31a"; locus "HERVH_3q26.31a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0324"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### MER4B_3q26.31 ### chr3 rmsk gene 171854841 171857227 . + . gene_id "MER4B_3q26.31"; transcript_id "MER4B_3q26.31"; locus "MER4B_3q26.31"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0105"; model_cov "2117"; model_pct "31.3"; chr3 rmsk exon 171854841 171855329 2613 + . gene_id "MER4B_3q26.31"; transcript_id "MER4B_3q26.31"; locus "MER4B_3q26.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0105"; repClass "LTR"; repEnd "2619"; repFamily "ERV1"; repLeft "-4139"; repStart "2109"; chr3 rmsk exon 171855658 171856026 1711 + . gene_id "MER4B_3q26.31"; transcript_id "MER4B_3q26.31"; locus "MER4B_3q26.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0105"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "-3663"; repStart "2720"; chr3 rmsk exon 171856013 171856666 3942 + . gene_id "MER4B_3q26.31"; transcript_id "MER4B_3q26.31"; locus "MER4B_3q26.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0105"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3421"; chr3 rmsk exon 171856666 171857227 3641 + . gene_id "MER4B_3q26.31"; transcript_id "MER4B_3q26.31"; locus "MER4B_3q26.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0105"; repClass "LTR"; repEnd "5017"; repFamily "ERV1"; repLeft "-1741"; repStart "4452"; ### ERVLB4_3q26.31b ### chr3 rmsk gene 172021123 172021928 . + . gene_id "ERVLB4_3q26.31b"; transcript_id "ERVLB4_3q26.31b"; locus "ERVLB4_3q26.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0388"; model_cov "813"; model_pct "14.2"; chr3 rmsk exon 172021123 172021928 4275 + . gene_id "ERVLB4_3q26.31b"; transcript_id "ERVLB4_3q26.31b"; locus "ERVLB4_3q26.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0388"; repClass "LTR"; repEnd "2092"; repFamily "ERVL"; repLeft "-3622"; repStart "1279"; ### LTR23_3q26.31 ### chr3 rmsk gene 172026012 172028823 . - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0026"; model_cov "1434"; model_pct "28.0"; chr3 rmsk exon 172026012 172026061 441 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "2277"; repFamily "ERV1"; repLeft "2236"; repStart "-2846"; chr3 rmsk exon 172026372 172026589 441 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "2235"; repFamily "ERV1"; repLeft "2050"; repStart "-2888"; chr3 rmsk exon 172026888 172027062 1360 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "1826"; repFamily "ERV1"; repLeft "1726"; repStart "-3297"; chr3 rmsk exon 172027370 172027976 1360 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "1725"; repFamily "ERV1"; repLeft "1117"; repStart "-3398"; chr3 rmsk exon 172028365 172028497 398 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "990"; repFamily "ERV1"; repLeft "853"; repStart "-4133"; chr3 rmsk exon 172028513 172028823 689 - . gene_id "LTR23_3q26.31"; transcript_id "LTR23_3q26.31"; locus "LTR23_3q26.31"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0026"; repClass "LTR"; repEnd "-145"; repFamily "ERV1"; repLeft "-508"; repStart "-5268"; ### ERV316A3_3q26.31 ### chr3 rmsk gene 172550393 172552486 . - . gene_id "ERV316A3_3q26.31"; transcript_id "ERV316A3_3q26.31"; locus "ERV316A3_3q26.31"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0588"; model_cov "1700"; model_pct "32.5"; chr3 rmsk exon 172550393 172550780 1088 - . gene_id "ERV316A3_3q26.31"; transcript_id "ERV316A3_3q26.31"; locus "ERV316A3_3q26.31"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0588"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "4"; repStart "-11"; chr3 rmsk exon 172550784 172552486 4180 - . gene_id "ERV316A3_3q26.31"; transcript_id "ERV316A3_3q26.31"; locus "ERV316A3_3q26.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0588"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "3525"; repStart "-1"; ### HUERSP3B_3q26.31a ### chr3 rmsk gene 172666117 172668316 . + . gene_id "HUERSP3B_3q26.31a"; transcript_id "HUERSP3B_3q26.31a"; locus "HUERSP3B_3q26.31a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0034"; model_cov "1625"; model_pct "21.9"; chr3 rmsk exon 172666117 172666645 2851 + . gene_id "HUERSP3B_3q26.31a"; transcript_id "HUERSP3B_3q26.31a"; locus "HUERSP3B_3q26.31a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0034"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "95"; chr3 rmsk exon 172666646 172666740 356 + . gene_id "HUERSP3B_3q26.31a"; transcript_id "HUERSP3B_3q26.31a"; locus "HUERSP3B_3q26.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0034"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "-7318"; repStart "1"; chr3 rmsk exon 172666748 172666933 808 + . gene_id "HUERSP3B_3q26.31a"; transcript_id "HUERSP3B_3q26.31a"; locus "HUERSP3B_3q26.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0034"; repClass "LTR"; repEnd "-875"; repFamily "ERV1"; repLeft "-8293"; repStart "-1061"; chr3 rmsk exon 172666974 172668316 6641 + . gene_id "HUERSP3B_3q26.31a"; transcript_id "HUERSP3B_3q26.31a"; locus "HUERSP3B_3q26.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0034"; repClass "LTR"; repEnd "2104"; repFamily "ERV1"; repLeft "-5314"; repStart "764"; ### HUERSP3B_3q26.31b ### chr3 rmsk gene 172672365 172674983 . + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0035"; model_cov "2894"; model_pct "39.0"; chr3 rmsk exon 172672365 172673221 5819 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-5635"; repStart "926"; chr3 rmsk exon 172673216 172673358 920 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "3181"; repFamily "ERV1"; repLeft "-4237"; repStart "3039"; chr3 rmsk exon 172673396 172674127 4014 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "4799"; repFamily "ERV1"; repLeft "-2619"; repStart "3465"; chr3 rmsk exon 172674117 172674159 2281 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "5028"; repFamily "ERV1"; repLeft "-2390"; repStart "4986"; chr3 rmsk exon 172674467 172674869 2281 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "5431"; repFamily "ERV1"; repLeft "-1987"; repStart "5029"; chr3 rmsk exon 172674858 172674983 408 + . gene_id "HUERSP3B_3q26.31b"; transcript_id "HUERSP3B_3q26.31b"; locus "HUERSP3B_3q26.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0035"; repClass "LTR"; repEnd "6961"; repFamily "ERV1"; repLeft "-457"; repStart "6844"; ### HML1_3q26.31a ### chr3 rmsk gene 172719014 172720560 . + . gene_id "HML1_3q26.31a"; transcript_id "HML1_3q26.31a"; locus "HML1_3q26.31a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0020"; model_cov "815"; model_pct "13.4"; chr3 rmsk exon 172719014 172719432 1917 + . gene_id "HML1_3q26.31a"; transcript_id "HML1_3q26.31a"; locus "HML1_3q26.31a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0020"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 172719433 172719967 6222 + . gene_id "HML1_3q26.31a"; transcript_id "HML1_3q26.31a"; locus "HML1_3q26.31a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0020"; repClass "LTR"; repEnd "540"; repFamily "ERVK"; repLeft "-5556"; repStart "1"; chr3 rmsk exon 172720279 172720560 6222 + . gene_id "HML1_3q26.31a"; transcript_id "HML1_3q26.31a"; locus "HML1_3q26.31a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0020"; repClass "LTR"; repEnd "817"; repFamily "ERVK"; repLeft "-5279"; repStart "541"; ### HERVW_3q26.31 ### chr3 rmsk gene 172720804 172723487 . + . gene_id "HERVW_3q26.31"; transcript_id "HERVW_3q26.31"; locus "HERVW_3q26.31"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0080"; model_cov "2564"; model_pct "29.7"; chr3 rmsk exon 172720804 172722001 9044 + . gene_id "HERVW_3q26.31"; transcript_id "HERVW_3q26.31"; locus "HERVW_3q26.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0080"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "824"; chr3 rmsk exon 172721985 172723439 11159 + . gene_id "HERVW_3q26.31"; transcript_id "HERVW_3q26.31"; locus "HERVW_3q26.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0080"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2430"; chr3 rmsk exon 172723439 172723487 362 + . gene_id "HERVW_3q26.31"; transcript_id "HERVW_3q26.31"; locus "HERVW_3q26.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0080"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "433"; ### HML1_3q26.31b ### chr3 rmsk gene 172723488 172724743 . + . gene_id "HML1_3q26.31b"; transcript_id "HML1_3q26.31b"; locus "HML1_3q26.31b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0021"; model_cov "874"; model_pct "14.3"; chr3 rmsk exon 172723488 172723960 1752 + . gene_id "HML1_3q26.31b"; transcript_id "HML1_3q26.31b"; locus "HML1_3q26.31b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0021"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "-490"; repStart "5036"; chr3 rmsk exon 172723956 172724135 1495 + . gene_id "HML1_3q26.31b"; transcript_id "HML1_3q26.31b"; locus "HML1_3q26.31b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0021"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5716"; chr3 rmsk exon 172724211 172724329 757 + . gene_id "HML1_3q26.31b"; transcript_id "HML1_3q26.31b"; locus "HML1_3q26.31b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0021"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5973"; chr3 rmsk exon 172724333 172724743 2012 + . gene_id "HML1_3q26.31b"; transcript_id "HML1_3q26.31b"; locus "HML1_3q26.31b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0021"; repClass "LTR"; repEnd "607"; repFamily "ERVK"; repLeft "-1"; repStart "1"; ### MER101_3q26.31 ### chr3 rmsk gene 172795345 172800133 . + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; category "internal"; intModel "MER101-int"; locid "MER101-int_0108"; model_cov "4776"; model_pct "71.9"; chr3 rmsk exon 172795345 172795906 1532 + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0108"; repClass "LTR"; repEnd "4262"; repFamily "ERV1"; repLeft "-2377"; repStart "3302"; chr3 rmsk exon 172795912 172796490 1092 + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0108"; repClass "LTR"; repEnd "2691"; repFamily "ERV1"; repLeft "-3948"; repStart "1717"; chr3 rmsk exon 172796559 172796650 344 + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0108"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "2674"; chr3 rmsk exon 172797398 172799589 3297 + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0108"; repClass "LTR"; repEnd "5633"; repFamily "ERV1"; repLeft "-1006"; repStart "3135"; chr3 rmsk exon 172799895 172800133 555 + . gene_id "MER101_3q26.31"; transcript_id "MER101_3q26.31"; locus "MER101_3q26.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0108"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6386"; ### HERVH_3q26.31b ### chr3 rmsk gene 173155218 173161544 . - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0325"; model_cov "5816"; model_pct "75.4"; chr3 rmsk exon 173155218 173155631 2553 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 173155632 173156008 2484 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 173156009 173156228 1472 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 173156230 173158293 7743 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4199"; repStart "-1290"; chr3 rmsk exon 173158290 173161124 14150 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr3 rmsk exon 173161127 173161544 2540 - . gene_id "HERVH_3q26.31b"; transcript_id "HERVH_3q26.31b"; locus "HERVH_3q26.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0325"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_3q26.31 ### chr3 rmsk gene 173245627 173249941 . - . gene_id "HUERSP1_3q26.31"; transcript_id "HUERSP1_3q26.31"; locus "HUERSP1_3q26.31"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0053"; model_cov "4119"; model_pct "65.8"; chr3 rmsk exon 173245627 173249776 19706 - . gene_id "HUERSP1_3q26.31"; transcript_id "HUERSP1_3q26.31"; locus "HUERSP1_3q26.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0053"; repClass "LTR"; repEnd "4120"; repFamily "ERV1"; repLeft "1"; repStart "-2143"; chr3 rmsk exon 173249777 173249941 768 - . gene_id "HUERSP1_3q26.31"; transcript_id "HUERSP1_3q26.31"; locus "HUERSP1_3q26.31"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0053"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "547"; repStart "0"; ### HERVH48_3q26.31 ### chr3 rmsk gene 173274055 173281973 . + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0013"; model_cov "6905"; model_pct "100.0"; chr3 rmsk exon 173274055 173274398 2950 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "335"; repFamily "ERV1"; repLeft "-72"; repStart "1"; chr3 rmsk exon 173274708 173274782 2950 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "-1"; repStart "336"; chr3 rmsk exon 173274783 173278491 18632 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "3820"; repFamily "ERV1"; repLeft "-2834"; repStart "1"; chr3 rmsk exon 173278496 173278756 1902 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "3216"; repFamily "ERV1"; repLeft "-3438"; repStart "2957"; chr3 rmsk exon 173278752 173281509 19870 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "6649"; repFamily "ERV1"; repLeft "-5"; repStart "3822"; chr3 rmsk exon 173281515 173281973 2837 + . gene_id "HERVH48_3q26.31"; transcript_id "HERVH48_3q26.31"; locus "HERVH48_3q26.31"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0013"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_3q26.31c ### chr3 rmsk gene 173536700 173540495 . - . gene_id "ERVLB4_3q26.31c"; transcript_id "ERVLB4_3q26.31c"; locus "ERVLB4_3q26.31c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0389"; model_cov "2967"; model_pct "51.9"; chr3 rmsk exon 173536700 173537209 1832 - . gene_id "ERVLB4_3q26.31c"; transcript_id "ERVLB4_3q26.31c"; locus "ERVLB4_3q26.31c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0389"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "37"; repStart "0"; chr3 rmsk exon 173537210 173537483 8896 - . gene_id "ERVLB4_3q26.31c"; transcript_id "ERVLB4_3q26.31c"; locus "ERVLB4_3q26.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0389"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5399"; repStart "0"; chr3 rmsk exon 173537520 173539375 8896 - . gene_id "ERVLB4_3q26.31c"; transcript_id "ERVLB4_3q26.31c"; locus "ERVLB4_3q26.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0389"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "3289"; repStart "-316"; chr3 rmsk exon 173539950 173540495 3607 - . gene_id "ERVLB4_3q26.31c"; transcript_id "ERVLB4_3q26.31c"; locus "ERVLB4_3q26.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0389"; repClass "LTR"; repEnd "3448"; repFamily "ERVL"; repLeft "2905"; repStart "-2266"; ### HERVL_3q26.31a ### chr3 rmsk gene 174395588 174397705 . + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0324"; model_cov "1240"; model_pct "21.9"; chr3 rmsk exon 174395588 174396006 2893 + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0324"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr3 rmsk exon 174396007 174396629 4911 + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0324"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-2412"; repStart "2613"; chr3 rmsk exon 174396625 174397226 4699 + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0324"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5043"; chr3 rmsk exon 174397227 174397619 3099 + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0324"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr3 rmsk exon 174397663 174397705 3099 + . gene_id "HERVL_3q26.31a"; transcript_id "HERVL_3q26.31a"; locus "HERVL_3q26.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0324"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "401"; ### ERVLE_3q26.31a ### chr3 rmsk gene 174416345 174419014 . - . gene_id "ERVLE_3q26.31a"; transcript_id "ERVLE_3q26.31a"; locus "ERVLE_3q26.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0878"; model_cov "1359"; model_pct "24.0"; chr3 rmsk exon 174416345 174417021 1306 - . gene_id "ERVLE_3q26.31a"; transcript_id "ERVLE_3q26.31a"; locus "ERVLE_3q26.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0878"; repClass "LTR"; repEnd "3921"; repFamily "ERVL"; repLeft "3228"; repStart "-1746"; chr3 rmsk exon 174418359 174419014 1113 - . gene_id "ERVLE_3q26.31a"; transcript_id "ERVLE_3q26.31a"; locus "ERVLE_3q26.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0878"; repClass "LTR"; repEnd "3762"; repFamily "ERVL"; repLeft "3096"; repStart "-1905"; ### ERVLB4_3q26.31d ### chr3 rmsk gene 174428401 174429610 . + . gene_id "ERVLB4_3q26.31d"; transcript_id "ERVLB4_3q26.31d"; locus "ERVLB4_3q26.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0390"; model_cov "832"; model_pct "14.6"; chr3 rmsk exon 174428401 174428556 442 + . gene_id "ERVLB4_3q26.31d"; transcript_id "ERVLB4_3q26.31d"; locus "ERVLB4_3q26.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0390"; repClass "LTR"; repEnd "4465"; repFamily "ERVL"; repLeft "-1249"; repStart "4312"; chr3 rmsk exon 174428632 174429245 1545 + . gene_id "ERVLB4_3q26.31d"; transcript_id "ERVLB4_3q26.31d"; locus "ERVLB4_3q26.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0390"; repClass "LTR"; repEnd "5303"; repFamily "ERVL"; repLeft "-411"; repStart "4675"; chr3 rmsk exon 174429555 174429610 1545 + . gene_id "ERVLB4_3q26.31d"; transcript_id "ERVLB4_3q26.31d"; locus "ERVLB4_3q26.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0390"; repClass "LTR"; repEnd "5355"; repFamily "ERVL"; repLeft "-359"; repStart "5304"; ### HERVL_3q26.31b ### chr3 rmsk gene 174882919 174886520 . - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0325"; model_cov "2403"; model_pct "42.5"; chr3 rmsk exon 174882919 174883323 2921 - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0325"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr3 rmsk exon 174883324 174884627 10075 - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0325"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4360"; repStart "0"; chr3 rmsk exon 174884629 174885723 8338 - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0325"; repClass "LTR"; repEnd "1110"; repFamily "ERVL"; repLeft "1"; repStart "-4544"; chr3 rmsk exon 174885724 174885876 3151 - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0325"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "303"; repStart "0"; chr3 rmsk exon 174886213 174886520 3151 - . gene_id "HERVL_3q26.31b"; transcript_id "HERVL_3q26.31b"; locus "HERVL_3q26.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0325"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "2"; repStart "-142"; ### HML3_3q26.31 ### chr3 rmsk gene 175051904 175057019 . - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0050"; model_cov "5055"; model_pct "84.0"; chr3 rmsk exon 175051904 175052401 3789 - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0050"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 175052402 175053650 10008 - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0050"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4774"; repStart "0"; chr3 rmsk exon 175053651 175055923 13533 - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0050"; repClass "LTR"; repEnd "4355"; repFamily "ERVK"; repLeft "1126"; repStart "-1666"; chr3 rmsk exon 175055926 175056507 4621 - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0050"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr3 rmsk exon 175056508 175057019 4019 - . gene_id "HML3_3q26.31"; transcript_id "HML3_3q26.31"; locus "HML3_3q26.31"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0050"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_3q26.31c ### chr3 rmsk gene 175528123 175534485 . - . gene_id "HERVL_3q26.31c"; transcript_id "HERVL_3q26.31c"; locus "HERVL_3q26.31c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0326"; model_cov "5653"; model_pct "100.0"; chr3 rmsk exon 175528123 175528576 3160 - . gene_id "HERVL_3q26.31c"; transcript_id "HERVL_3q26.31c"; locus "HERVL_3q26.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0326"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 175528577 175534227 43675 - . gene_id "HERVL_3q26.31c"; transcript_id "HERVL_3q26.31c"; locus "HERVL_3q26.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0326"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 175534228 175534485 1333 - . gene_id "HERVL_3q26.31c"; transcript_id "HERVL_3q26.31c"; locus "HERVL_3q26.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0326"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "183"; repStart "0"; ### HERVH_3q26.31c ### chr3 rmsk gene 175827485 175836221 . + . gene_id "HERVH_3q26.31c"; transcript_id "HERVH_3q26.31c"; locus "HERVH_3q26.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0326"; model_cov "7712"; model_pct "100.0"; chr3 rmsk exon 175827485 175827934 3618 + . gene_id "HERVH_3q26.31c"; transcript_id "HERVH_3q26.31c"; locus "HERVH_3q26.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0326"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 175827937 175835771 39716 + . gene_id "HERVH_3q26.31c"; transcript_id "HERVH_3q26.31c"; locus "HERVH_3q26.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0326"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 175835772 175836221 3569 + . gene_id "HERVH_3q26.31c"; transcript_id "HERVH_3q26.31c"; locus "HERVH_3q26.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0326"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q26.31b ### chr3 rmsk gene 175845687 175850610 . - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0879"; model_cov "1933"; model_pct "34.1"; chr3 rmsk exon 175845687 175845735 786 - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0879"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "4802"; repStart "-818"; chr3 rmsk exon 175846270 175846895 786 - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0879"; repClass "LTR"; repEnd "4801"; repFamily "ERVL"; repLeft "4158"; repStart "-866"; chr3 rmsk exon 175847917 175848248 279 - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0879"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "2224"; repStart "-3097"; chr3 rmsk exon 175848416 175848774 541 - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0879"; repClass "LTR"; repEnd "1994"; repFamily "ERVL"; repLeft "1636"; repStart "-3673"; chr3 rmsk exon 175850078 175850610 533 - . gene_id "ERVLE_3q26.31b"; transcript_id "ERVLE_3q26.31b"; locus "ERVLE_3q26.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0879"; repClass "LTR"; repEnd "694"; repFamily "ERVL"; repLeft "155"; repStart "-4973"; ### HERVH_3q26.32a ### chr3 rmsk gene 176061364 176066982 . + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0327"; model_cov "5358"; model_pct "69.5"; chr3 rmsk exon 176061364 176061752 2484 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 176061755 176065579 25888 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr3 rmsk exon 176065582 176065764 1417 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4488"; chr3 rmsk exon 176065762 176066337 3780 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4575"; chr3 rmsk exon 176066339 176066554 1435 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 176066553 176066931 2303 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 176066932 176066982 444 + . gene_id "HERVH_3q26.32a"; transcript_id "HERVH_3q26.32a"; locus "HERVH_3q26.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0327"; repClass "LTR"; repEnd "37"; repFamily "ERV1"; repLeft "-413"; repStart "-13"; ### ERV316A3_3q26.32 ### chr3 rmsk gene 176142121 176145282 . - . gene_id "ERV316A3_3q26.32"; transcript_id "ERV316A3_3q26.32"; locus "ERV316A3_3q26.32"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0589"; model_cov "2641"; model_pct "50.5"; chr3 rmsk exon 176142121 176144743 3343 - . gene_id "ERV316A3_3q26.32"; transcript_id "ERV316A3_3q26.32"; locus "ERV316A3_3q26.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0589"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "105"; repStart "-2480"; chr3 rmsk exon 176144854 176145282 1214 - . gene_id "ERV316A3_3q26.32"; transcript_id "ERV316A3_3q26.32"; locus "ERV316A3_3q26.32"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0589"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "1"; repStart "-9"; ### HERVH_3q26.32b ### chr3 rmsk gene 176321619 176327363 . - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0328"; model_cov "4908"; model_pct "63.6"; chr3 rmsk exon 176321619 176322069 3397 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 176322070 176322450 2426 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 176322449 176322670 1373 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 176322668 176323328 4361 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 176323331 176323822 3225 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3503"; repStart "-3720"; chr3 rmsk exon 176323825 176323974 916 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 176323954 176326910 19642 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 176326913 176327363 3360 - . gene_id "HERVH_3q26.32b"; transcript_id "HERVH_3q26.32b"; locus "HERVH_3q26.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0328"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3_3q26.32 ### chr3 rmsk gene 176505793 176515706 . - . gene_id "HUERSP3_3q26.32"; transcript_id "HUERSP3_3q26.32"; locus "HUERSP3_3q26.32"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0045"; model_cov "8801"; model_pct "98.7"; chr3 rmsk exon 176505793 176506382 1902 - . gene_id "HUERSP3_3q26.32"; transcript_id "HUERSP3_3q26.32"; locus "HUERSP3_3q26.32"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0045"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 176506384 176514454 49834 - . gene_id "HUERSP3_3q26.32"; transcript_id "HUERSP3_3q26.32"; locus "HUERSP3_3q26.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0045"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "750"; repStart "0"; chr3 rmsk exon 176514489 176515123 2789 - . gene_id "HUERSP3_3q26.32"; transcript_id "HUERSP3_3q26.32"; locus "HUERSP3_3q26.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0045"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "-8286"; chr3 rmsk exon 176515125 176515706 2316 - . gene_id "HUERSP3_3q26.32"; transcript_id "HUERSP3_3q26.32"; locus "HUERSP3_3q26.32"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0045"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP1_3q26.32 ### chr3 rmsk gene 176821132 176823885 . - . gene_id "HUERSP1_3q26.32"; transcript_id "HUERSP1_3q26.32"; locus "HUERSP1_3q26.32"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0054"; model_cov "2775"; model_pct "44.3"; chr3 rmsk exon 176821132 176821717 8663 - . gene_id "HUERSP1_3q26.32"; transcript_id "HUERSP1_3q26.32"; locus "HUERSP1_3q26.32"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0054"; repClass "LTR"; repEnd "2778"; repFamily "ERV1"; repLeft "2221"; repStart "-3485"; chr3 rmsk exon 176821992 176822907 8663 - . gene_id "HUERSP1_3q26.32"; transcript_id "HUERSP1_3q26.32"; locus "HUERSP1_3q26.32"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0054"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "1230"; repStart "-4043"; chr3 rmsk exon 176822933 176823885 8663 - . gene_id "HUERSP1_3q26.32"; transcript_id "HUERSP1_3q26.32"; locus "HUERSP1_3q26.32"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0054"; repClass "LTR"; repEnd "1229"; repFamily "ERV1"; repLeft "1"; repStart "-5034"; ### ERVLE_3q26.32a ### chr3 rmsk gene 177267056 177268447 . - . gene_id "ERVLE_3q26.32a"; transcript_id "ERVLE_3q26.32a"; locus "ERVLE_3q26.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0882"; model_cov "789"; model_pct "13.9"; chr3 rmsk exon 177267056 177267515 1381 - . gene_id "ERVLE_3q26.32a"; transcript_id "ERVLE_3q26.32a"; locus "ERVLE_3q26.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0882"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "4288"; repStart "-906"; chr3 rmsk exon 177268149 177268447 933 - . gene_id "ERVLE_3q26.32a"; transcript_id "ERVLE_3q26.32a"; locus "ERVLE_3q26.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0882"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "3615"; repStart "-1736"; ### ERVLE_3q26.32b ### chr3 rmsk gene 177324447 177328850 . - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0883"; model_cov "2977"; model_pct "52.5"; chr3 rmsk exon 177324447 177324919 668 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "5647"; repFamily "ERVL"; repLeft "5137"; repStart "-20"; chr3 rmsk exon 177325296 177325799 4279 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "5037"; repFamily "ERVL"; repLeft "4520"; repStart "-630"; chr3 rmsk exon 177326105 177326899 4279 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "3676"; repStart "-1148"; chr3 rmsk exon 177327188 177327484 2571 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "3260"; repStart "-2104"; chr3 rmsk exon 177327801 177328322 2571 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "2734"; repStart "-2408"; chr3 rmsk exon 177328622 177328850 2571 - . gene_id "ERVLE_3q26.32b"; transcript_id "ERVLE_3q26.32b"; locus "ERVLE_3q26.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0883"; repClass "LTR"; repEnd "2733"; repFamily "ERVL"; repLeft "2454"; repStart "-2934"; ### HERVH_3q26.32c ### chr3 rmsk gene 177665834 177671132 . - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0329"; model_cov "4904"; model_pct "63.6"; chr3 rmsk exon 177665834 177666283 3448 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 177666284 177666663 2390 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3 rmsk exon 177666664 177666879 1330 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 177666881 177667543 4186 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 177667546 177668048 3154 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 177668039 177668184 803 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3142"; repStart "-4423"; chr3 rmsk exon 177668181 177670678 15049 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 177670681 177671132 3428 - . gene_id "HERVH_3q26.32c"; transcript_id "HERVH_3q26.32c"; locus "HERVH_3q26.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0329"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_3q26.32a ### chr3 rmsk gene 177948638 177951612 . - . gene_id "HERVL40_3q26.32a"; transcript_id "HERVL40_3q26.32a"; locus "HERVL40_3q26.32a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0084"; model_cov "2028"; model_pct "36.7"; chr3 rmsk exon 177948638 177949311 2662 - . gene_id "HERVL40_3q26.32a"; transcript_id "HERVL40_3q26.32a"; locus "HERVL40_3q26.32a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0084"; repClass "LTR"; repEnd "3708"; repFamily "ERVL"; repLeft "3036"; repStart "-1822"; chr3 rmsk exon 177949334 177950201 2510 - . gene_id "HERVL40_3q26.32a"; transcript_id "HERVL40_3q26.32a"; locus "HERVL40_3q26.32a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0084"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "2058"; repStart "-2586"; chr3 rmsk exon 177950272 177950590 811 - . gene_id "HERVL40_3q26.32a"; transcript_id "HERVL40_3q26.32a"; locus "HERVL40_3q26.32a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0084"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "1297"; repStart "-3905"; chr3 rmsk exon 177951485 177951612 372 - . gene_id "HERVL40_3q26.32a"; transcript_id "HERVL40_3q26.32a"; locus "HERVL40_3q26.32a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0084"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "17"; repStart "-5371"; ### MER101_3q26.32 ### chr3 rmsk gene 178050183 178053655 . + . gene_id "MER101_3q26.32"; transcript_id "MER101_3q26.32"; locus "MER101_3q26.32"; category "internal"; intModel "MER101-int"; locid "MER101-int_0109"; model_cov "3332"; model_pct "50.2"; chr3 rmsk exon 178050183 178053655 6664 + . gene_id "MER101_3q26.32"; transcript_id "MER101_3q26.32"; locus "MER101_3q26.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0109"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "1270"; ### HERVH_3q26.32d ### chr3 rmsk gene 178207403 178214658 . + . gene_id "HERVH_3q26.32d"; transcript_id "HERVH_3q26.32d"; locus "HERVH_3q26.32d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0331"; model_cov "6251"; model_pct "81.0"; chr3 rmsk exon 178207403 178207808 2654 + . gene_id "HERVH_3q26.32d"; transcript_id "HERVH_3q26.32d"; locus "HERVH_3q26.32d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0331"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr3 rmsk exon 178207963 178212510 24345 + . gene_id "HERVH_3q26.32d"; transcript_id "HERVH_3q26.32d"; locus "HERVH_3q26.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0331"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "373"; chr3 rmsk exon 178212497 178214246 7980 + . gene_id "HERVH_3q26.32d"; transcript_id "HERVH_3q26.32d"; locus "HERVH_3q26.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0331"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5769"; chr3 rmsk exon 178214247 178214658 2774 + . gene_id "HERVH_3q26.32d"; transcript_id "HERVH_3q26.32d"; locus "HERVH_3q26.32d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0331"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_3q26.32 ### chr3 rmsk gene 178856092 178858125 . + . gene_id "ERVL_3q26.32"; transcript_id "ERVL_3q26.32"; locus "ERVL_3q26.32"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0093"; model_cov "1681"; model_pct "29.2"; chr3 rmsk exon 178856092 178856745 6606 + . gene_id "ERVL_3q26.32"; transcript_id "ERVL_3q26.32"; locus "ERVL_3q26.32"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0093"; repClass "LTR"; repEnd "4765"; repFamily "ERVL"; repLeft "-992"; repStart "4074"; chr3 rmsk exon 178856798 178857138 6606 + . gene_id "ERVL_3q26.32"; transcript_id "ERVL_3q26.32"; locus "ERVL_3q26.32"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0093"; repClass "LTR"; repEnd "5128"; repFamily "ERVL"; repLeft "-629"; repStart "4766"; chr3 rmsk exon 178857456 178858125 6606 + . gene_id "ERVL_3q26.32"; transcript_id "ERVL_3q26.32"; locus "ERVL_3q26.32"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0093"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5129"; ### HERVW_3q26.32 ### chr3 rmsk gene 179054591 179060155 . + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0081"; model_cov "4437"; model_pct "51.4"; chr3 rmsk exon 179054591 179055103 3671 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr3 rmsk exon 179055104 179055146 276 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "-8583"; repStart "1"; chr3 rmsk exon 179055134 179058474 30917 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "5300"; repFamily "ERV1"; repLeft "-3326"; repStart "1952"; chr3 rmsk exon 179058786 179059514 30917 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5301"; chr3 rmsk exon 179059508 179059546 285 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 179059537 179059828 2324 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 179059829 179060155 2423 + . gene_id "HERVW_3q26.32"; transcript_id "HERVW_3q26.32"; locus "HERVW_3q26.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0081"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL40_3q26.32b ### chr3 rmsk gene 179297321 179298854 . + . gene_id "HERVL40_3q26.32b"; transcript_id "HERVL40_3q26.32b"; locus "HERVL40_3q26.32b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0085"; model_cov "1076"; model_pct "19.5"; chr3 rmsk exon 179297321 179298410 3827 + . gene_id "HERVL40_3q26.32b"; transcript_id "HERVL40_3q26.32b"; locus "HERVL40_3q26.32b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0085"; repClass "LTR"; repEnd "4944"; repFamily "ERVL"; repLeft "-586"; repStart "3868"; chr3 rmsk exon 179298427 179298854 1606 + . gene_id "HERVL40_3q26.32b"; transcript_id "HERVL40_3q26.32b"; locus "HERVL40_3q26.32b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0085"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-5"; repStart "1"; ### HERVH_3q26.33a ### chr3 rmsk gene 179515305 179517068 . - . gene_id "HERVH_3q26.33a"; transcript_id "HERVH_3q26.33a"; locus "HERVH_3q26.33a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0332"; model_cov "1394"; model_pct "18.1"; chr3 rmsk exon 179515305 179515692 2330 - . gene_id "HERVH_3q26.33a"; transcript_id "HERVH_3q26.33a"; locus "HERVH_3q26.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0332"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 179515693 179516148 3033 - . gene_id "HERVH_3q26.33a"; transcript_id "HERVH_3q26.33a"; locus "HERVH_3q26.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0332"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr3 rmsk exon 179516131 179517068 6662 - . gene_id "HERVH_3q26.33a"; transcript_id "HERVH_3q26.33a"; locus "HERVH_3q26.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0332"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4070"; repStart "-2693"; ### HERVH_3q26.33b ### chr3 rmsk gene 179517069 179522482 . + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0333"; model_cov "4737"; model_pct "61.4"; chr3 rmsk exon 179517069 179517479 2901 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 179517483 179520267 14555 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr3 rmsk exon 179520255 179520403 935 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3141"; chr3 rmsk exon 179520394 179520898 3454 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 179520901 179521308 1853 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "6189"; repFamily "ERV1"; repLeft "-1524"; repStart "5672"; chr3 rmsk exon 179521293 179521483 1120 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4959"; chr3 rmsk exon 179521485 179522080 2415 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 179522081 179522482 2662 + . gene_id "HERVH_3q26.33b"; transcript_id "HERVH_3q26.33b"; locus "HERVH_3q26.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0333"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_3q26.33c ### chr3 rmsk gene 179522486 179526348 . - . gene_id "HERVH_3q26.33c"; transcript_id "HERVH_3q26.33c"; locus "HERVH_3q26.33c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0334"; model_cov "3710"; model_pct "48.1"; chr3 rmsk exon 179522486 179522816 1378 - . gene_id "HERVH_3q26.33c"; transcript_id "HERVH_3q26.33c"; locus "HERVH_3q26.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0334"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "4990"; repStart "-2454"; chr3 rmsk exon 179522811 179523255 2695 - . gene_id "HERVH_3q26.33c"; transcript_id "HERVH_3q26.33c"; locus "HERVH_3q26.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0334"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr3 rmsk exon 179523235 179525958 13946 - . gene_id "HERVH_3q26.33c"; transcript_id "HERVH_3q26.33c"; locus "HERVH_3q26.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0334"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 179525959 179526348 2560 - . gene_id "HERVH_3q26.33c"; transcript_id "HERVH_3q26.33c"; locus "HERVH_3q26.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0334"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_3q26.33 ### chr3 rmsk gene 179994615 180001424 . + . gene_id "HERVL_3q26.33"; transcript_id "HERVL_3q26.33"; locus "HERVL_3q26.33"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0327"; model_cov "5652"; model_pct "100.0"; chr3 rmsk exon 179994615 179995058 3073 + . gene_id "HERVL_3q26.33"; transcript_id "HERVL_3q26.33"; locus "HERVL_3q26.33"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0327"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "-107"; chr3 rmsk exon 179995304 180000000 37736 + . gene_id "HERVL_3q26.33"; transcript_id "HERVL_3q26.33"; locus "HERVL_3q26.33"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0327"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "-936"; repStart "1"; chr3 rmsk exon 180000001 180000925 7328 + . gene_id "HERVL_3q26.33"; transcript_id "HERVL_3q26.33"; locus "HERVL_3q26.33"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0327"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4719"; chr3 rmsk exon 180000926 180001424 3213 + . gene_id "HERVL_3q26.33"; transcript_id "HERVL_3q26.33"; locus "HERVL_3q26.33"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0327"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-110"; ### ERV316A3_3q26.33 ### chr3 rmsk gene 180172482 180173569 . - . gene_id "ERV316A3_3q26.33"; transcript_id "ERV316A3_3q26.33"; locus "ERV316A3_3q26.33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0592"; model_cov "688"; model_pct "13.2"; chr3 rmsk exon 180172482 180172961 1166 - . gene_id "ERV316A3_3q26.33"; transcript_id "ERV316A3_3q26.33"; locus "ERV316A3_3q26.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0592"; repClass "LTR"; repEnd "1451"; repFamily "ERVL"; repLeft "958"; repStart "-3775"; chr3 rmsk exon 180172967 180173157 379 - . gene_id "ERV316A3_3q26.33"; transcript_id "ERV316A3_3q26.33"; locus "ERV316A3_3q26.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0592"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "231"; repStart "-4800"; chr3 rmsk exon 180173164 180173569 1512 - . gene_id "ERV316A3_3q26.33"; transcript_id "ERV316A3_3q26.33"; locus "ERV316A3_3q26.33"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0592"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "-11"; ### MER61_3q26.33a ### chr3 rmsk gene 180227547 180235941 . + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0102"; model_cov "4996"; model_pct "95.8"; chr3 rmsk exon 180227547 180227988 2701 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0102"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 180228301 180228973 2620 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0102"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-4376"; repStart "226"; chr3 rmsk exon 180228974 180231217 10125 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0102"; repClass "LTR"; repEnd "3572"; repFamily "ERV1"; repLeft "-1645"; repStart "959"; chr3 rmsk exon 180231212 180231452 11224 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0102"; repClass "LTR"; repEnd "3685"; repFamily "ERV1"; repLeft "-1532"; repStart "3446"; chr3 rmsk exon 180231748 180232819 11224 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0102"; repClass "LTR"; repEnd "4742"; repFamily "ERV1"; repLeft "-475"; repStart "3686"; chr3 rmsk exon 180235082 180235509 11224 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0102"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4743"; chr3 rmsk exon 180235510 180235941 2686 + . gene_id "MER61_3q26.33a"; transcript_id "MER61_3q26.33a"; locus "MER61_3q26.33a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0102"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_3q26.33a ### chr3 rmsk gene 180402647 180404488 . + . gene_id "ERVLB4_3q26.33a"; transcript_id "ERVLB4_3q26.33a"; locus "ERVLB4_3q26.33a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0393"; model_cov "898"; model_pct "15.7"; chr3 rmsk exon 180402647 180403099 1875 + . gene_id "ERVLB4_3q26.33a"; transcript_id "ERVLB4_3q26.33a"; locus "ERVLB4_3q26.33a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0393"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr3 rmsk exon 180403616 180403934 1766 + . gene_id "ERVLB4_3q26.33a"; transcript_id "ERVLB4_3q26.33a"; locus "ERVLB4_3q26.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0393"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-5378"; repStart "1"; chr3 rmsk exon 180403931 180404488 3437 + . gene_id "ERVLB4_3q26.33a"; transcript_id "ERVLB4_3q26.33a"; locus "ERVLB4_3q26.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0393"; repClass "LTR"; repEnd "3812"; repFamily "ERVL"; repLeft "-1902"; repStart "3249"; ### LTR57_3q26.33 ### chr3 rmsk gene 180548134 180553900 . + . gene_id "LTR57_3q26.33"; transcript_id "LTR57_3q26.33"; locus "LTR57_3q26.33"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0051"; model_cov "5327"; model_pct "99.7"; chr3 rmsk exon 180548134 180548199 295 + . gene_id "LTR57_3q26.33"; transcript_id "LTR57_3q26.33"; locus "LTR57_3q26.33"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0051"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-7"; repStart "336"; chr3 rmsk exon 180548207 180553453 22737 + . gene_id "LTR57_3q26.33"; transcript_id "LTR57_3q26.33"; locus "LTR57_3q26.33"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0051"; repClass "LTR"; repEnd "5328"; repFamily "ERVL"; repLeft "-15"; repStart "1"; chr3 rmsk exon 180553460 180553632 2397 + . gene_id "LTR57_3q26.33"; transcript_id "LTR57_3q26.33"; locus "LTR57_3q26.33"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0051"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "-225"; repStart "1"; chr3 rmsk exon 180553680 180553900 2397 + . gene_id "LTR57_3q26.33"; transcript_id "LTR57_3q26.33"; locus "LTR57_3q26.33"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0051"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-1"; repStart "187"; ### HUERSP2_3q26.33 ### chr3 rmsk gene 180868025 180870678 . - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0038"; model_cov "1503"; model_pct "48.7"; chr3 rmsk exon 180868025 180868652 3946 - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0038"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 180868653 180869201 2493 - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0038"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2468"; repStart "0"; chr3 rmsk exon 180869188 180869931 3724 - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0038"; repClass "LTR"; repEnd "1398"; repFamily "ERV1"; repLeft "647"; repStart "-1690"; chr3 rmsk exon 180869934 180870075 488 - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0038"; repClass "LTR"; repEnd "134"; repFamily "ERV1"; repLeft "2"; repStart "-2954"; chr3 rmsk exon 180870077 180870678 3784 - . gene_id "HUERSP2_3q26.33"; transcript_id "HUERSP2_3q26.33"; locus "HUERSP2_3q26.33"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0038"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_3q26.33b ### chr3 rmsk gene 180894470 180900477 . + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0103"; model_cov "4094"; model_pct "78.5"; chr3 rmsk exon 180894470 180894800 2123 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0103"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 180894802 180895458 2676 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "-4430"; repStart "1"; chr3 rmsk exon 180895444 180895485 302 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "1361"; repFamily "ERV1"; repLeft "-3856"; repStart "1320"; chr3 rmsk exon 180895484 180895730 1326 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "1623"; repFamily "ERV1"; repLeft "-3594"; repStart "1411"; chr3 rmsk exon 180895796 180895914 4094 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "2290"; repFamily "ERV1"; repLeft "-2927"; repStart "2178"; chr3 rmsk exon 180896216 180896686 4094 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "2753"; repFamily "ERV1"; repLeft "-2464"; repStart "2291"; chr3 rmsk exon 180896819 180897050 17480 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "2970"; repFamily "ERV1"; repLeft "-2247"; repStart "2733"; chr3 rmsk exon 180897344 180897940 17480 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "3572"; repFamily "ERV1"; repLeft "-1645"; repStart "2971"; chr3 rmsk exon 180898242 180899831 17480 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "5200"; repFamily "ERV1"; repLeft "-17"; repStart "3573"; chr3 rmsk exon 180900137 180900161 17480 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0103"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5201"; chr3 rmsk exon 180900162 180900477 1749 + . gene_id "MER61_3q26.33b"; transcript_id "MER61_3q26.33b"; locus "MER61_3q26.33b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0103"; repClass "LTR"; repEnd "332"; repFamily "ERV1"; repLeft "-9"; repStart "1"; ### ERVLB4_3q26.33b ### chr3 rmsk gene 182417327 182422085 . + . gene_id "ERVLB4_3q26.33b"; transcript_id "ERVLB4_3q26.33b"; locus "ERVLB4_3q26.33b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0394"; model_cov "3129"; model_pct "54.8"; chr3 rmsk exon 182417327 182419328 12021 + . gene_id "ERVLB4_3q26.33b"; transcript_id "ERVLB4_3q26.33b"; locus "ERVLB4_3q26.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0394"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-1106"; repStart "2584"; chr3 rmsk exon 182420387 182421151 6433 + . gene_id "ERVLB4_3q26.33b"; transcript_id "ERVLB4_3q26.33b"; locus "ERVLB4_3q26.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0394"; repClass "LTR"; repEnd "5390"; repFamily "ERVL"; repLeft "-324"; repStart "4607"; chr3 rmsk exon 182421196 182421519 6433 + . gene_id "ERVLB4_3q26.33b"; transcript_id "ERVLB4_3q26.33b"; locus "ERVLB4_3q26.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0394"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5391"; chr3 rmsk exon 182421520 182422085 2715 + . gene_id "ERVLB4_3q26.33b"; transcript_id "ERVLB4_3q26.33b"; locus "ERVLB4_3q26.33b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0394"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERVLE_3q26.33 ### chr3 rmsk gene 182467073 182471636 . + . gene_id "ERVLE_3q26.33"; transcript_id "ERVLE_3q26.33"; locus "ERVLE_3q26.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0885"; model_cov "2579"; model_pct "45.5"; chr3 rmsk exon 182467073 182467168 380 + . gene_id "ERVLE_3q26.33"; transcript_id "ERVLE_3q26.33"; locus "ERVLE_3q26.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0885"; repClass "LTR"; repEnd "2195"; repFamily "ERVL"; repLeft "-3472"; repStart "2105"; chr3 rmsk exon 182469201 182471636 4687 + . gene_id "ERVLE_3q26.33"; transcript_id "ERVLE_3q26.33"; locus "ERVLE_3q26.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0885"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "-391"; repStart "2787"; ### LTR25_3q26.33a ### chr3 rmsk gene 182716415 182725114 . - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0031"; model_cov "7045"; model_pct "98.0"; chr3 rmsk exon 182716415 182719149 23856 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "4476"; repStart "-1"; chr3 rmsk exon 182719460 182720473 23856 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "4475"; repFamily "ERV1"; repLeft "3493"; repStart "-2713"; chr3 rmsk exon 182720782 182721033 23856 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "3492"; repFamily "ERV1"; repLeft "3257"; repStart "-3696"; chr3 rmsk exon 182721313 182721618 23856 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "3256"; repFamily "ERV1"; repLeft "2938"; repStart "-3932"; chr3 rmsk exon 182721936 182723343 23856 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "906"; repStart "-4859"; chr3 rmsk exon 182723323 182723968 3868 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "532"; repFamily "ERV1"; repLeft "-112"; repStart "-6656"; chr3 rmsk exon 182724031 182724613 3169 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "-120"; repFamily "ERV1"; repLeft "-662"; repStart "-7308"; chr3 rmsk exon 182724926 182725114 3169 - . gene_id "LTR25_3q26.33a"; transcript_id "LTR25_3q26.33a"; locus "LTR25_3q26.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0031"; repClass "LTR"; repEnd "-663"; repFamily "ERV1"; repLeft "-853"; repStart "-7851"; ### LTR25_3q26.33b ### chr3 rmsk gene 182725315 182726346 . - . gene_id "LTR25_3q26.33b"; transcript_id "LTR25_3q26.33b"; locus "LTR25_3q26.33b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0032"; model_cov "1041"; model_pct "14.5"; chr3 rmsk exon 182725315 182726346 2900 - . gene_id "LTR25_3q26.33b"; transcript_id "LTR25_3q26.33b"; locus "LTR25_3q26.33b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0032"; repClass "LTR"; repEnd "1071"; repFamily "ERV1"; repLeft "30"; repStart "-6117"; ### MER41_3q27.1 ### chr3 rmsk gene 183063570 183068598 . + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0110"; model_cov "2532"; model_pct "42.6"; chr3 rmsk exon 183063570 183063728 1161 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0110"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "395"; chr3 rmsk exon 183063798 183064272 3305 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0110"; repClass "LTR"; repEnd "493"; repFamily "ERV1"; repLeft "-5453"; repStart "1"; chr3 rmsk exon 183064808 183064960 842 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0110"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-5311"; repStart "484"; chr3 rmsk exon 183065515 183065556 10644 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0110"; repClass "LTR"; repEnd "3826"; repFamily "ERV1"; repLeft "-2120"; repStart "3788"; chr3 rmsk exon 183065586 183066319 12875 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0110"; repClass "LTR"; repEnd "4404"; repFamily "ERV1"; repLeft "-1542"; repStart "4092"; chr3 rmsk exon 183066599 183068130 12875 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0110"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4405"; chr3 rmsk exon 183068131 183068598 3576 + . gene_id "MER41_3q27.1"; transcript_id "MER41_3q27.1"; locus "MER41_3q27.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0110"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_3q27.1a ### chr3 rmsk gene 183114642 183118015 . - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0594"; model_cov "1684"; model_pct "32.2"; chr3 rmsk exon 183114642 183115542 2303 - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0594"; repClass "LTR"; repEnd "1736"; repFamily "ERVL"; repLeft "805"; repStart "-3490"; chr3 rmsk exon 183116544 183116904 1325 - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0594"; repClass "LTR"; repEnd "816"; repFamily "ERVL"; repLeft "437"; repStart "-4410"; chr3 rmsk exon 183117204 183117423 1325 - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0594"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "215"; repStart "-4790"; chr3 rmsk exon 183117474 183117655 480 - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0594"; repClass "LTR"; repEnd "156"; repFamily "ERVL"; repLeft "3"; repStart "-5070"; chr3 rmsk exon 183117657 183118015 1283 - . gene_id "ERV316A3_3q27.1a"; transcript_id "ERV316A3_3q27.1a"; locus "ERV316A3_3q27.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0594"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "86"; repStart "-3"; ### ERVLE_3q27.1a ### chr3 rmsk gene 183188242 183189245 . - . gene_id "ERVLE_3q27.1a"; transcript_id "ERVLE_3q27.1a"; locus "ERVLE_3q27.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0886"; model_cov "677"; model_pct "11.9"; chr3 rmsk exon 183188242 183188683 704 - . gene_id "ERVLE_3q27.1a"; transcript_id "ERVLE_3q27.1a"; locus "ERVLE_3q27.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0886"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "4402"; repStart "-789"; chr3 rmsk exon 183189049 183189245 427 - . gene_id "ERVLE_3q27.1a"; transcript_id "ERVLE_3q27.1a"; locus "ERVLE_3q27.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0886"; repClass "LTR"; repEnd "4209"; repFamily "ERVL"; repLeft "4008"; repStart "-1458"; ### HERVL_3q27.1 ### chr3 rmsk gene 183243288 183244200 . - . gene_id "HERVL_3q27.1"; transcript_id "HERVL_3q27.1"; locus "HERVL_3q27.1"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0328"; model_cov "627"; model_pct "11.1"; chr3 rmsk exon 183243288 183243876 4782 - . gene_id "HERVL_3q27.1"; transcript_id "HERVL_3q27.1"; locus "HERVL_3q27.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0328"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "50"; repStart "-5025"; chr3 rmsk exon 183244152 183244200 4782 - . gene_id "HERVL_3q27.1"; transcript_id "HERVL_3q27.1"; locus "HERVL_3q27.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0328"; repClass "LTR"; repEnd "49"; repFamily "ERVL"; repLeft "1"; repStart "-5605"; ### ERVLB4_3q27.1a ### chr3 rmsk gene 183435040 183439428 . + . gene_id "ERVLB4_3q27.1a"; transcript_id "ERVLB4_3q27.1a"; locus "ERVLB4_3q27.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0395"; model_cov "4134"; model_pct "72.3"; chr3 rmsk exon 183435040 183436435 24537 + . gene_id "ERVLB4_3q27.1a"; transcript_id "ERVLB4_3q27.1a"; locus "ERVLB4_3q27.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0395"; repClass "LTR"; repEnd "2045"; repFamily "ERVL"; repLeft "-3669"; repStart "615"; chr3 rmsk exon 183436801 183439428 24537 + . gene_id "ERVLB4_3q27.1a"; transcript_id "ERVLB4_3q27.1a"; locus "ERVLB4_3q27.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0395"; repClass "LTR"; repEnd "4750"; repFamily "ERVL"; repLeft "-964"; repStart "2046"; ### ERVLE_3q27.1b ### chr3 rmsk gene 184073453 184074072 . - . gene_id "ERVLE_3q27.1b"; transcript_id "ERVLE_3q27.1b"; locus "ERVLE_3q27.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0887"; model_cov "657"; model_pct "11.6"; chr3 rmsk exon 184073453 184074072 2943 - . gene_id "ERVLE_3q27.1b"; transcript_id "ERVLE_3q27.1b"; locus "ERVLE_3q27.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0887"; repClass "LTR"; repEnd "5405"; repFamily "ERVL"; repLeft "4748"; repStart "-262"; ### ERVLB4_3q27.1b ### chr3 rmsk gene 184448915 184453632 . - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0396"; model_cov "3162"; model_pct "55.3"; chr3 rmsk exon 184448915 184449435 7301 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "4652"; repFamily "ERVL"; repLeft "4120"; repStart "-1062"; chr3 rmsk exon 184449737 184450410 7301 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "4119"; repFamily "ERVL"; repLeft "3463"; repStart "-1595"; chr3 rmsk exon 184450514 184450773 1788 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "3351"; repFamily "ERVL"; repLeft "3081"; repStart "-2363"; chr3 rmsk exon 184450791 184451352 5687 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "1719"; repFamily "ERVL"; repLeft "1165"; repStart "-3995"; chr3 rmsk exon 184451652 184451797 5687 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "1031"; repStart "-4550"; chr3 rmsk exon 184452150 184452507 5687 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "1030"; repFamily "ERVL"; repLeft "628"; repStart "-4684"; chr3 rmsk exon 184453029 184453632 3401 - . gene_id "ERVLB4_3q27.1b"; transcript_id "ERVLB4_3q27.1b"; locus "ERVLB4_3q27.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0396"; repClass "LTR"; repEnd "641"; repFamily "ERVL"; repLeft "26"; repStart "-5073"; ### ERV316A3_3q27.1b ### chr3 rmsk gene 184464071 184466203 . - . gene_id "ERV316A3_3q27.1b"; transcript_id "ERV316A3_3q27.1b"; locus "ERV316A3_3q27.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0597"; model_cov "1016"; model_pct "19.4"; chr3 rmsk exon 184464071 184464480 647 - . gene_id "ERV316A3_3q27.1b"; transcript_id "ERV316A3_3q27.1b"; locus "ERV316A3_3q27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0597"; repClass "LTR"; repEnd "4369"; repFamily "ERVL"; repLeft "3827"; repStart "-857"; chr3 rmsk exon 184465348 184465798 2140 - . gene_id "ERV316A3_3q27.1b"; transcript_id "ERV316A3_3q27.1b"; locus "ERV316A3_3q27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0597"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "3799"; repStart "-953"; chr3 rmsk exon 184465826 184466203 1318 - . gene_id "ERV316A3_3q27.1b"; transcript_id "ERV316A3_3q27.1b"; locus "ERV316A3_3q27.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0597"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "3"; repStart "-7"; ### ERV316A3_3q27.1c ### chr3 rmsk gene 184541323 184542173 . - . gene_id "ERV316A3_3q27.1c"; transcript_id "ERV316A3_3q27.1c"; locus "ERV316A3_3q27.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0599"; model_cov "788"; model_pct "15.1"; chr3 rmsk exon 184541323 184541805 1800 - . gene_id "ERV316A3_3q27.1c"; transcript_id "ERV316A3_3q27.1c"; locus "ERV316A3_3q27.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0599"; repClass "LTR"; repEnd "4029"; repFamily "ERVL"; repLeft "3534"; repStart "-1197"; chr3 rmsk exon 184541899 184542045 472 - . gene_id "ERV316A3_3q27.1c"; transcript_id "ERV316A3_3q27.1c"; locus "ERV316A3_3q27.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0599"; repClass "LTR"; repEnd "3530"; repFamily "ERVL"; repLeft "3359"; repStart "-1696"; chr3 rmsk exon 184542058 184542173 307 - . gene_id "ERV316A3_3q27.1c"; transcript_id "ERV316A3_3q27.1c"; locus "ERV316A3_3q27.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0599"; repClass "LTR"; repEnd "3303"; repFamily "ERVL"; repLeft "3181"; repStart "-1923"; ### HUERSP1_3q27.1 ### chr3 rmsk gene 184699400 184707256 . - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0055"; model_cov "6254"; model_pct "99.9"; chr3 rmsk exon 184699400 184699944 4046 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "535"; repFamily "ERV1"; repLeft "1"; repStart "-156"; chr3 rmsk exon 184699947 184701312 44498 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "6260"; repFamily "ERV1"; repLeft "4901"; repStart "-3"; chr3 rmsk exon 184701615 184702386 44498 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "4900"; repFamily "ERV1"; repLeft "4136"; repStart "-1363"; chr3 rmsk exon 184702689 184703266 44498 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "4135"; repFamily "ERV1"; repLeft "3560"; repStart "-2128"; chr3 rmsk exon 184703563 184704803 44498 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "3559"; repFamily "ERV1"; repLeft "2315"; repStart "-2704"; chr3 rmsk exon 184704831 184707114 44498 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "2314"; repFamily "ERV1"; repLeft "2"; repStart "-3949"; chr3 rmsk exon 184707115 184707256 1097 - . gene_id "HUERSP1_3q27.1"; transcript_id "HUERSP1_3q27.1"; locus "HUERSP1_3q27.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0055"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "548"; repStart "0"; ### HML3_3q27.2a ### chr3 rmsk gene 185012756 185019807 . - . gene_id "HML3_3q27.2a"; transcript_id "HML3_3q27.2a"; locus "HML3_3q27.2a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0051"; model_cov "6020"; model_pct "100.0"; chr3 rmsk exon 185012756 185013288 4001 - . gene_id "HML3_3q27.2a"; transcript_id "HML3_3q27.2a"; locus "HML3_3q27.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0051"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 185013289 185019290 49632 - . gene_id "HML3_3q27.2a"; transcript_id "HML3_3q27.2a"; locus "HML3_3q27.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0051"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 185019291 185019807 4331 - . gene_id "HML3_3q27.2a"; transcript_id "HML3_3q27.2a"; locus "HML3_3q27.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0051"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_3q27.2b ### chr3 rmsk gene 185105203 185111049 . + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0052"; model_cov "4836"; model_pct "80.3"; chr3 rmsk exon 185105203 185105713 4239 + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0052"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 185105714 185106276 4570 + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0052"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr3 rmsk exon 185106279 185107846 13384 + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0052"; repClass "LTR"; repEnd "2692"; repFamily "ERVK"; repLeft "-3329"; repStart "1126"; chr3 rmsk exon 185107842 185110533 22785 + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0052"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "-1"; repStart "3329"; chr3 rmsk exon 185110535 185111049 4244 + . gene_id "HML3_3q27.2b"; transcript_id "HML3_3q27.2b"; locus "HML3_3q27.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0052"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_3q27.2 ### chr3 rmsk gene 185182260 185183401 . + . gene_id "ERV316A3_3q27.2"; transcript_id "ERV316A3_3q27.2"; locus "ERV316A3_3q27.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0600"; model_cov "1189"; model_pct "22.8"; chr3 rmsk exon 185182260 185183401 2719 + . gene_id "ERV316A3_3q27.2"; transcript_id "ERV316A3_3q27.2"; locus "ERV316A3_3q27.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0600"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "-433"; repStart "3604"; ### MER101_3q27.2 ### chr3 rmsk gene 185262644 185265712 . + . gene_id "MER101_3q27.2"; transcript_id "MER101_3q27.2"; locus "MER101_3q27.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0110"; model_cov "747"; model_pct "11.3"; chr3 rmsk exon 185262644 185262733 383 + . gene_id "MER101_3q27.2"; transcript_id "MER101_3q27.2"; locus "MER101_3q27.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0110"; repClass "LTR"; repEnd "2651"; repFamily "ERV1"; repLeft "-3988"; repStart "2561"; chr3 rmsk exon 185263554 185263842 1665 + . gene_id "MER101_3q27.2"; transcript_id "MER101_3q27.2"; locus "MER101_3q27.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0110"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-3644"; repStart "2785"; chr3 rmsk exon 185264150 185264398 1665 + . gene_id "MER101_3q27.2"; transcript_id "MER101_3q27.2"; locus "MER101_3q27.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0110"; repClass "LTR"; repEnd "3251"; repFamily "ERV1"; repLeft "-3388"; repStart "2996"; chr3 rmsk exon 185265513 185265712 893 + . gene_id "MER101_3q27.2"; transcript_id "MER101_3q27.2"; locus "MER101_3q27.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0110"; repClass "LTR"; repEnd "3509"; repFamily "ERV1"; repLeft "-3130"; repStart "3317"; ### HERVH_3q27.2 ### chr3 rmsk gene 185373849 185379707 . - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0335"; model_cov "5241"; model_pct "68.0"; chr3 rmsk exon 185373849 185374236 2772 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "419"; repFamily "ERV1"; repLeft "1"; repStart "-45"; chr3 rmsk exon 185374237 185374806 3452 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr3 rmsk exon 185374800 185375050 1212 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr3 rmsk exon 185375048 185376870 10751 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "3140"; repStart "-2798"; chr3 rmsk exon 185376865 185379075 12862 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "801"; repStart "-4726"; chr3 rmsk exon 185379136 185379600 2553 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "2"; repStart "-7254"; chr3 rmsk exon 185379602 185379707 786 - . gene_id "HERVH_3q27.2"; transcript_id "HERVH_3q27.2"; locus "HERVH_3q27.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0335"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### HML2_3q27.2 ### chr3 rmsk gene 185562548 185571727 . - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0029"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 185562548 185563515 8924 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 185563611 185565226 14815 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr3 rmsk exon 185565226 185570759 50470 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr3 rmsk exon 185570760 185571727 8884 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_3q27.2 ### chr3 rmsk gene 185873385 185875201 . + . gene_id "ERVLE_3q27.2"; transcript_id "ERVLE_3q27.2"; locus "ERVLE_3q27.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0888"; model_cov "619"; model_pct "10.9"; chr3 rmsk exon 185873385 185873737 2418 + . gene_id "ERVLE_3q27.2"; transcript_id "ERVLE_3q27.2"; locus "ERVLE_3q27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0888"; repClass "LTR"; repEnd "5390"; repFamily "ERVL"; repLeft "-277"; repStart "5041"; chr3 rmsk exon 185874032 185874149 2418 + . gene_id "ERVLE_3q27.2"; transcript_id "ERVLE_3q27.2"; locus "ERVLE_3q27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0888"; repClass "LTR"; repEnd "5504"; repFamily "ERVL"; repLeft "-163"; repStart "5391"; chr3 rmsk exon 185874731 185874742 2418 + . gene_id "ERVLE_3q27.2"; transcript_id "ERVLE_3q27.2"; locus "ERVLE_3q27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0888"; repClass "LTR"; repEnd "5639"; repFamily "ERVL"; repLeft "-28"; repStart "5505"; chr3 rmsk exon 185875168 185875201 2418 + . gene_id "ERVLE_3q27.2"; transcript_id "ERVLE_3q27.2"; locus "ERVLE_3q27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0888"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "-4"; repStart "5640"; ### ERV316A3_3q27.3a ### chr3 rmsk gene 186447266 186448335 . - . gene_id "ERV316A3_3q27.3a"; transcript_id "ERV316A3_3q27.3a"; locus "ERV316A3_3q27.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0601"; model_cov "638"; model_pct "12.2"; chr3 rmsk exon 186447266 186447660 808 - . gene_id "ERV316A3_3q27.3a"; transcript_id "ERV316A3_3q27.3a"; locus "ERV316A3_3q27.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0601"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "37"; repStart "-5"; chr3 rmsk exon 186447689 186448009 630 - . gene_id "ERV316A3_3q27.3a"; transcript_id "ERV316A3_3q27.3a"; locus "ERV316A3_3q27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0601"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "4874"; repStart "-7"; chr3 rmsk exon 186448053 186448335 800 - . gene_id "ERV316A3_3q27.3a"; transcript_id "ERV316A3_3q27.3a"; locus "ERV316A3_3q27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0601"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "4461"; repStart "-472"; ### ERV316A3_3q27.3b ### chr3 rmsk gene 186463443 186465796 . + . gene_id "ERV316A3_3q27.3b"; transcript_id "ERV316A3_3q27.3b"; locus "ERV316A3_3q27.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0602"; model_cov "2047"; model_pct "39.2"; chr3 rmsk exon 186463443 186464200 1698 + . gene_id "ERV316A3_3q27.3b"; transcript_id "ERV316A3_3q27.3b"; locus "ERV316A3_3q27.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0602"; repClass "LTR"; repEnd "3487"; repFamily "ERVL"; repLeft "-1739"; repStart "2682"; chr3 rmsk exon 186464346 186464625 714 + . gene_id "ERV316A3_3q27.3b"; transcript_id "ERV316A3_3q27.3b"; locus "ERV316A3_3q27.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0602"; repClass "LTR"; repEnd "3572"; repFamily "ERVL"; repLeft "-1654"; repStart "3067"; chr3 rmsk exon 186464654 186465266 1697 + . gene_id "ERV316A3_3q27.3b"; transcript_id "ERV316A3_3q27.3b"; locus "ERV316A3_3q27.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0602"; repClass "LTR"; repEnd "4768"; repFamily "ERVL"; repLeft "-458"; repStart "4031"; chr3 rmsk exon 186465424 186465796 1243 + . gene_id "ERV316A3_3q27.3b"; transcript_id "ERV316A3_3q27.3b"; locus "ERV316A3_3q27.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0602"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### HERVH_3q27.3a ### chr3 rmsk gene 186657774 186663690 . + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0336"; model_cov "5274"; model_pct "68.4"; chr3 rmsk exon 186657774 186658170 2578 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 186658173 186662057 9262 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "-3719"; repStart "1"; chr3 rmsk exon 186662048 186662706 4154 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4478"; chr3 rmsk exon 186662708 186662916 1326 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 186662915 186663291 2296 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 186663292 186663690 2715 + . gene_id "HERVH_3q27.3a"; transcript_id "HERVH_3q27.3a"; locus "HERVH_3q27.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0336"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_3q27.3c ### chr3 rmsk gene 186813953 186814516 . + . gene_id "ERV316A3_3q27.3c"; transcript_id "ERV316A3_3q27.3c"; locus "ERV316A3_3q27.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0603"; model_cov "569"; model_pct "10.9"; chr3 rmsk exon 186813953 186814516 1847 + . gene_id "ERV316A3_3q27.3c"; transcript_id "ERV316A3_3q27.3c"; locus "ERV316A3_3q27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0603"; repClass "LTR"; repEnd "3974"; repFamily "ERVL"; repLeft "-1252"; repStart "3405"; ### ERV316A3_3q27.3d ### chr3 rmsk gene 187106849 187110529 . - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0604"; model_cov "1948"; model_pct "37.3"; chr3 rmsk exon 187106849 187107143 1205 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "1"; repStart "-210"; chr3 rmsk exon 187107245 187107936 1964 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4404"; repStart "-85"; chr3 rmsk exon 187108031 187108634 1977 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "4266"; repFamily "ERVL"; repLeft "3659"; repStart "-960"; chr3 rmsk exon 187109283 187109856 1146 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "2689"; repStart "-1933"; chr3 rmsk exon 187110124 187110283 506 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "326"; repStart "0"; chr3 rmsk exon 187110370 187110529 448 - . gene_id "ERV316A3_3q27.3d"; transcript_id "ERV316A3_3q27.3d"; locus "ERV316A3_3q27.3d"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0604"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "18"; repStart "-310"; ### HERVH_3q27.3b ### chr3 rmsk gene 187175504 187181262 . - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0337"; model_cov "4916"; model_pct "63.7"; chr3 rmsk exon 187175504 187175954 3511 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr3 rmsk exon 187175960 187176339 2568 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 187176338 187176555 1425 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 187176557 187177218 4376 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 187177221 187177724 3413 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 187177715 187177864 992 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 187177844 187180810 21074 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr3 rmsk exon 187180813 187181262 3571 - . gene_id "HERVH_3q27.3b"; transcript_id "HERVH_3q27.3b"; locus "HERVH_3q27.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0337"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### ERV316A3_3q27.3e ### chr3 rmsk gene 187374111 187378966 . - . gene_id "ERV316A3_3q27.3e"; transcript_id "ERV316A3_3q27.3e"; locus "ERV316A3_3q27.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0605"; model_cov "3555"; model_pct "68.0"; chr3 rmsk exon 187374111 187374270 474 - . gene_id "ERV316A3_3q27.3e"; transcript_id "ERV316A3_3q27.3e"; locus "ERV316A3_3q27.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0605"; repClass "LTR"; repEnd "163"; repFamily "ERVL"; repLeft "1"; repStart "-275"; chr3 rmsk exon 187374334 187374727 1327 - . gene_id "ERV316A3_3q27.3e"; transcript_id "ERV316A3_3q27.3e"; locus "ERV316A3_3q27.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0605"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "4756"; repStart "-69"; chr3 rmsk exon 187375471 187376016 1327 - . gene_id "ERV316A3_3q27.3e"; transcript_id "ERV316A3_3q27.3e"; locus "ERV316A3_3q27.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0605"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "3958"; repStart "-728"; chr3 rmsk exon 187376395 187378966 6354 - . gene_id "ERV316A3_3q27.3e"; transcript_id "ERV316A3_3q27.3e"; locus "ERV316A3_3q27.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0605"; repClass "LTR"; repEnd "4248"; repFamily "ERVL"; repLeft "1634"; repStart "-978"; ### HERVH_3q27.3c ### chr3 rmsk gene 187466299 187472000 . - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0338"; model_cov "4919"; model_pct "63.8"; chr3 rmsk exon 187466299 187466711 2896 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 187466712 187467084 2264 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 187467083 187467299 1359 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 187467301 187467974 4463 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr3 rmsk exon 187467965 187468468 3467 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr3 rmsk exon 187468459 187468606 906 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 187468601 187471591 20557 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 187471594 187472000 2732 - . gene_id "HERVH_3q27.3c"; transcript_id "HERVH_3q27.3c"; locus "HERVH_3q27.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0338"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_3q27.3 ### chr3 rmsk gene 187472001 187477404 . + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0177"; model_cov "4639"; model_pct "70.3"; chr3 rmsk exon 187472001 187472919 5807 + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0177"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1560"; chr3 rmsk exon 187473163 187473552 3800 + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0177"; repClass "LTR"; repEnd "3119"; repFamily "ERV1"; repLeft "-3479"; repStart "2737"; chr3 rmsk exon 187473848 187474302 3800 + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0177"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3120"; chr3 rmsk exon 187474302 187476955 16991 + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0177"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3837"; chr3 rmsk exon 187476957 187477404 3188 + . gene_id "MER4_3q27.3"; transcript_id "MER4_3q27.3"; locus "MER4_3q27.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0177"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_3q27.3 ### chr3 rmsk gene 187658201 187661969 . + . gene_id "ERVLE_3q27.3"; transcript_id "ERVLE_3q27.3"; locus "ERVLE_3q27.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0891"; model_cov "2605"; model_pct "46.0"; chr3 rmsk exon 187658201 187658763 8025 + . gene_id "ERVLE_3q27.3"; transcript_id "ERVLE_3q27.3"; locus "ERVLE_3q27.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0891"; repClass "LTR"; repEnd "1613"; repFamily "ERVL"; repLeft "-4054"; repStart "1044"; chr3 rmsk exon 187659179 187660349 8025 + . gene_id "ERVLE_3q27.3"; transcript_id "ERVLE_3q27.3"; locus "ERVLE_3q27.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0891"; repClass "LTR"; repEnd "2830"; repFamily "ERVL"; repLeft "-2837"; repStart "1614"; chr3 rmsk exon 187661159 187661969 8025 + . gene_id "ERVLE_3q27.3"; transcript_id "ERVLE_3q27.3"; locus "ERVLE_3q27.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0891"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "-2016"; repStart "2831"; ### ERVLE_3q28e ### chr3 rmsk gene 189326490 189329355 . + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; category "insert*"; intModel "ERVL-E-int"; locid "ERVL-E-int_0892"; model_cov "1522"; model_pct "26.9"; chr3 rmsk exon 189326490 189326679 895 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; repClass "LTR"; repEnd "1656"; repFamily "ERVL"; repLeft "-4011"; repStart "1452"; chr3 rmsk exon 189326679 189326947 964 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; prev_strand "-"; repClass "LTR"; repEnd "1426"; repFamily "ERVL"; repLeft "1147"; repStart "-4241"; chr3 rmsk exon 189326947 189327268 399 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; prev_strand "-"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "902"; repStart "-4450"; chr3 rmsk exon 189327269 189328196 3962 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; repClass "LTR"; repEnd "3269"; repFamily "ERVL"; repLeft "-2398"; repStart "2337"; chr3 rmsk exon 189328473 189328727 3962 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; repClass "LTR"; repEnd "3506"; repFamily "ERVL"; repLeft "-2161"; repStart "3270"; chr3 rmsk exon 189329218 189329355 473 + . gene_id "ERVLE_3q28e"; transcript_id "ERVLE_3q28e"; locus "ERVLE_3q28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0892"; repClass "LTR"; repEnd "3646"; repFamily "ERVL"; repLeft "-2021"; repStart "3496"; ### ERV316A3_3q28a ### chr3 rmsk gene 189438050 189439235 . + . gene_id "ERV316A3_3q28a"; transcript_id "ERV316A3_3q28a"; locus "ERV316A3_3q28a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0606"; model_cov "540"; model_pct "10.3"; chr3 rmsk exon 189438050 189438527 1254 + . gene_id "ERV316A3_3q28a"; transcript_id "ERV316A3_3q28a"; locus "ERV316A3_3q28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0606"; repClass "LTR"; repEnd "4093"; repFamily "ERVL"; repLeft "-1133"; repStart "3638"; chr3 rmsk exon 189439150 189439235 301 + . gene_id "ERV316A3_3q28a"; transcript_id "ERV316A3_3q28a"; locus "ERV316A3_3q28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0606"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "-751"; repStart "4390"; ### ERV316A3_3q28b ### chr3 rmsk gene 189577410 189579603 . + . gene_id "ERV316A3_3q28b"; transcript_id "ERV316A3_3q28b"; locus "ERV316A3_3q28b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0608"; model_cov "1489"; model_pct "28.5"; chr3 rmsk exon 189577410 189577689 808 + . gene_id "ERV316A3_3q28b"; transcript_id "ERV316A3_3q28b"; locus "ERV316A3_3q28b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0608"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "-152"; repStart "24"; chr3 rmsk exon 189578110 189579019 4301 + . gene_id "ERV316A3_3q28b"; transcript_id "ERV316A3_3q28b"; locus "ERV316A3_3q28b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0608"; repClass "LTR"; repEnd "3635"; repFamily "ERVL"; repLeft "-1591"; repStart "2723"; chr3 rmsk exon 189579050 189579603 4301 + . gene_id "ERV316A3_3q28b"; transcript_id "ERV316A3_3q28b"; locus "ERV316A3_3q28b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0608"; repClass "LTR"; repEnd "4213"; repFamily "ERVL"; repLeft "-1013"; repStart "3636"; ### ERV316A3_3q28c ### chr3 rmsk gene 189615562 189620816 . - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0609"; model_cov "3788"; model_pct "72.5"; chr3 rmsk exon 189615562 189615919 1126 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "3802"; repFamily "ERVL"; repLeft "3431"; repStart "-1424"; chr3 rmsk exon 189616519 189616922 637 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "3391"; repFamily "ERVL"; repLeft "2992"; repStart "-1835"; chr3 rmsk exon 189616925 189618006 2954 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "2551"; repFamily "ERVL"; repLeft "1407"; repStart "-2675"; chr3 rmsk exon 189618174 189619947 4330 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "237"; repStart "-3115"; chr3 rmsk exon 189619950 189620073 317 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "335"; repStart "0"; chr3 rmsk exon 189620536 189620816 795 - . gene_id "ERV316A3_3q28c"; transcript_id "ERV316A3_3q28c"; locus "ERV316A3_3q28c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0609"; repClass "LTR"; repEnd "324"; repFamily "ERVL"; repLeft "40"; repStart "-139"; ### HERVH_3q28a ### chr3 rmsk gene 190144600 190150202 . + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0339"; model_cov "4898"; model_pct "63.5"; chr3 rmsk exon 190144600 190145007 2791 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 190145010 190147904 18681 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 190147899 190148046 793 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 190148046 190148539 3129 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr3 rmsk exon 190148542 190149203 4066 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 190149205 190149421 1259 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 190149422 190149793 2193 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3 rmsk exon 190149794 190150202 2848 + . gene_id "HERVH_3q28a"; transcript_id "HERVH_3q28a"; locus "HERVH_3q28a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0339"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q28a ### chr3 rmsk gene 190217125 190218206 . - . gene_id "ERVLE_3q28a"; transcript_id "ERVLE_3q28a"; locus "ERVLE_3q28a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0894"; model_cov "568"; model_pct "10.0"; chr3 rmsk exon 190217125 190217574 777 - . gene_id "ERVLE_3q28a"; transcript_id "ERVLE_3q28a"; locus "ERVLE_3q28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0894"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "4429"; repStart "-796"; chr3 rmsk exon 190218080 190218206 390 - . gene_id "ERVLE_3q28a"; transcript_id "ERVLE_3q28a"; locus "ERVLE_3q28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0894"; repClass "LTR"; repEnd "4342"; repFamily "ERVL"; repLeft "4216"; repStart "-1325"; ### HERVL_3q28a ### chr3 rmsk gene 190249382 190251109 . - . gene_id "HERVL_3q28a"; transcript_id "HERVL_3q28a"; locus "HERVL_3q28a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0330"; model_cov "1094"; model_pct "19.3"; chr3 rmsk exon 190249382 190250476 8120 - . gene_id "HERVL_3q28a"; transcript_id "HERVL_3q28a"; locus "HERVL_3q28a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0330"; repClass "LTR"; repEnd "1095"; repFamily "ERVL"; repLeft "1"; repStart "-4559"; chr3 rmsk exon 190250479 190250518 2818 - . gene_id "HERVL_3q28a"; transcript_id "HERVL_3q28a"; locus "HERVL_3q28a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0330"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "403"; repStart "-2"; chr3 rmsk exon 190250725 190251109 2818 - . gene_id "HERVL_3q28a"; transcript_id "HERVL_3q28a"; locus "HERVL_3q28a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0330"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "2"; repStart "-42"; ### ERV316A3_3q28d ### chr3 rmsk gene 190335732 190339270 . + . gene_id "ERV316A3_3q28d"; transcript_id "ERV316A3_3q28d"; locus "ERV316A3_3q28d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0610"; model_cov "2450"; model_pct "46.9"; chr3 rmsk exon 190335732 190335806 543 + . gene_id "ERV316A3_3q28d"; transcript_id "ERV316A3_3q28d"; locus "ERV316A3_3q28d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0610"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-13"; repStart "376"; chr3 rmsk exon 190336306 190336760 957 + . gene_id "ERV316A3_3q28d"; transcript_id "ERV316A3_3q28d"; locus "ERV316A3_3q28d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0610"; repClass "LTR"; repEnd "2783"; repFamily "ERVL"; repLeft "-2443"; repStart "2297"; chr3 rmsk exon 190336784 190338778 1565 + . gene_id "ERV316A3_3q28d"; transcript_id "ERV316A3_3q28d"; locus "ERV316A3_3q28d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0610"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "-55"; repStart "3207"; chr3 rmsk exon 190338851 190339270 1029 + . gene_id "ERV316A3_3q28d"; transcript_id "ERV316A3_3q28d"; locus "ERV316A3_3q28d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0610"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-17"; repStart "11"; ### ERV316A3_3q28e ### chr3 rmsk gene 190363714 190366901 . - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0611"; model_cov "2590"; model_pct "49.6"; chr3 rmsk exon 190363714 190364232 827 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "3842"; repFamily "ERVL"; repLeft "3314"; repStart "-1384"; chr3 rmsk exon 190364275 190364839 941 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "2775"; repStart "-1862"; chr3 rmsk exon 190364827 190364930 279 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "3151"; repFamily "ERVL"; repLeft "3048"; repStart "-2075"; chr3 rmsk exon 190364956 190366057 1957 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "1676"; repFamily "ERVL"; repLeft "540"; repStart "-3550"; chr3 rmsk exon 190366241 190366473 681 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "233"; repStart "-4759"; chr3 rmsk exon 190366490 190366901 1115 - . gene_id "ERV316A3_3q28e"; transcript_id "ERV316A3_3q28e"; locus "ERV316A3_3q28e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0611"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "4"; repStart "-4"; ### MER61_3q28 ### chr3 rmsk gene 190549018 190554482 . - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0104"; model_cov "4517"; model_pct "86.6"; chr3 rmsk exon 190549018 190549313 1504 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0104"; repClass "LTR"; repEnd "306"; repFamily "ERV1"; repLeft "1"; repStart "-35"; chr3 rmsk exon 190549314 190552488 19245 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0104"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "1983"; repStart "-1"; chr3 rmsk exon 190552488 190552696 1100 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0104"; repClass "LTR"; repEnd "1586"; repFamily "ERV1"; repLeft "1434"; repStart "-3631"; chr3 rmsk exon 190552702 190552992 1826 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0104"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "958"; repStart "-3963"; chr3 rmsk exon 190552993 190553778 3653 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0104"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "69"; repStart "-4377"; chr3 rmsk exon 190554089 190554163 3653 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0104"; repClass "LTR"; repEnd "68"; repFamily "ERV1"; repLeft "3"; repStart "-5149"; chr3 rmsk exon 190554166 190554482 1552 - . gene_id "MER61_3q28"; transcript_id "MER61_3q28"; locus "MER61_3q28"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0104"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_3q28a ### chr3 rmsk gene 190678311 190680723 . + . gene_id "HUERSP3B_3q28a"; transcript_id "HUERSP3B_3q28a"; locus "HUERSP3B_3q28a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0036"; model_cov "2059"; model_pct "27.8"; chr3 rmsk exon 190678311 190678440 949 + . gene_id "HUERSP3B_3q28a"; transcript_id "HUERSP3B_3q28a"; locus "HUERSP3B_3q28a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0036"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "515"; chr3 rmsk exon 190678541 190678621 584 + . gene_id "HUERSP3B_3q28a"; transcript_id "HUERSP3B_3q28a"; locus "HUERSP3B_3q28a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0036"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "-6932"; repStart "409"; chr3 rmsk exon 190678867 190678941 584 + . gene_id "HUERSP3B_3q28a"; transcript_id "HUERSP3B_3q28a"; locus "HUERSP3B_3q28a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0036"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "487"; chr3 rmsk exon 190678949 190680723 6882 + . gene_id "HUERSP3B_3q28a"; transcript_id "HUERSP3B_3q28a"; locus "HUERSP3B_3q28a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0036"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-4760"; repStart "748"; ### HUERSP3B_3q28b ### chr3 rmsk gene 190681070 190685007 . + . gene_id "HUERSP3B_3q28b"; transcript_id "HUERSP3B_3q28b"; locus "HUERSP3B_3q28b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0037"; model_cov "3648"; model_pct "49.2"; chr3 rmsk exon 190681070 190681194 784 + . gene_id "HUERSP3B_3q28b"; transcript_id "HUERSP3B_3q28b"; locus "HUERSP3B_3q28b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0037"; repClass "LTR"; repEnd "2429"; repFamily "ERV1"; repLeft "-4989"; repStart "2300"; chr3 rmsk exon 190681203 190682031 5608 + . gene_id "HUERSP3B_3q28b"; transcript_id "HUERSP3B_3q28b"; locus "HUERSP3B_3q28b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0037"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3047"; chr3 rmsk exon 190682031 190684591 15160 + . gene_id "HUERSP3B_3q28b"; transcript_id "HUERSP3B_3q28b"; locus "HUERSP3B_3q28b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0037"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "4719"; chr3 rmsk exon 190684593 190685007 2557 + . gene_id "HUERSP3B_3q28b"; transcript_id "HUERSP3B_3q28b"; locus "HUERSP3B_3q28b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0037"; repClass "LTR"; repEnd "416"; repFamily "ERV1"; repLeft "-228"; repStart "1"; ### ERVLB4_3q28a ### chr3 rmsk gene 190736544 190738951 . - . gene_id "ERVLB4_3q28a"; transcript_id "ERVLB4_3q28a"; locus "ERVLB4_3q28a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0399"; model_cov "2586"; model_pct "45.3"; chr3 rmsk exon 190736544 190738951 1733 - . gene_id "ERVLB4_3q28a"; transcript_id "ERVLB4_3q28a"; locus "ERVLB4_3q28a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0399"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "190"; repStart "-2938"; ### ERV316A3_3q28f ### chr3 rmsk gene 190836085 190837756 . + . gene_id "ERV316A3_3q28f"; transcript_id "ERV316A3_3q28f"; locus "ERV316A3_3q28f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0612"; model_cov "1100"; model_pct "21.0"; chr3 rmsk exon 190836085 190837152 1956 + . gene_id "ERV316A3_3q28f"; transcript_id "ERV316A3_3q28f"; locus "ERV316A3_3q28f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0612"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "-112"; repStart "4014"; chr3 rmsk exon 190837608 190837756 329 + . gene_id "ERV316A3_3q28f"; transcript_id "ERV316A3_3q28f"; locus "ERV316A3_3q28f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0612"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "-264"; repStart "7"; ### HERVH_3q28b ### chr3 rmsk gene 190920164 190925860 . + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0340"; model_cov "4919"; model_pct "63.8"; chr3 rmsk exon 190920164 190920610 3241 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 190920613 190923527 16022 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr3 rmsk exon 190923507 190923656 949 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 190923647 190924149 3360 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 190924152 190924814 4326 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr3 rmsk exon 190924812 190925032 1325 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr3 rmsk exon 190925031 190925410 2481 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr3 rmsk exon 190925411 190925860 3354 + . gene_id "HERVH_3q28b"; transcript_id "HERVH_3q28b"; locus "HERVH_3q28b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0340"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_3q28g ### chr3 rmsk gene 190970855 190972349 . - . gene_id "ERV316A3_3q28g"; transcript_id "ERV316A3_3q28g"; locus "ERV316A3_3q28g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0613"; model_cov "1135"; model_pct "21.7"; chr3 rmsk exon 190970855 190971265 647 - . gene_id "ERV316A3_3q28g"; transcript_id "ERV316A3_3q28g"; locus "ERV316A3_3q28g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0613"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "1"; repStart "-3"; chr3 rmsk exon 190971395 190971492 297 - . gene_id "ERV316A3_3q28g"; transcript_id "ERV316A3_3q28g"; locus "ERV316A3_3q28g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0613"; repClass "LTR"; repEnd "5082"; repFamily "ERVL"; repLeft "4972"; repStart "-144"; chr3 rmsk exon 190971553 190972349 1765 - . gene_id "ERV316A3_3q28g"; transcript_id "ERV316A3_3q28g"; locus "ERV316A3_3q28g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0613"; repClass "LTR"; repEnd "4326"; repFamily "ERVL"; repLeft "3301"; repStart "-900"; ### PRIMA41_3q28 ### chr3 rmsk gene 190991226 190994578 . - . gene_id "PRIMA41_3q28"; transcript_id "PRIMA41_3q28"; locus "PRIMA41_3q28"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0043"; model_cov "3312"; model_pct "42.7"; chr3 rmsk exon 190991226 190991577 2193 - . gene_id "PRIMA41_3q28"; transcript_id "PRIMA41_3q28"; locus "PRIMA41_3q28"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0043"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7407"; repStart "0"; chr3 rmsk exon 190991578 190994578 5245 - . gene_id "PRIMA41_3q28"; transcript_id "PRIMA41_3q28"; locus "PRIMA41_3q28"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0043"; repClass "LTR"; repEnd "6251"; repFamily "ERV1"; repLeft "3288"; repStart "-1505"; ### ERV316A3_3q28h ### chr3 rmsk gene 191019110 191019669 . - . gene_id "ERV316A3_3q28h"; transcript_id "ERV316A3_3q28h"; locus "ERV316A3_3q28h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0615"; model_cov "563"; model_pct "10.8"; chr3 rmsk exon 191019110 191019669 1083 - . gene_id "ERV316A3_3q28h"; transcript_id "ERV316A3_3q28h"; locus "ERV316A3_3q28h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0615"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "2015"; repStart "-2648"; ### ERVLB4_3q28b ### chr3 rmsk gene 191025774 191029918 . - . gene_id "ERVLB4_3q28b"; transcript_id "ERVLB4_3q28b"; locus "ERVLB4_3q28b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0400"; model_cov "3866"; model_pct "67.7"; chr3 rmsk exon 191025774 191026496 13620 - . gene_id "ERVLB4_3q28b"; transcript_id "ERVLB4_3q28b"; locus "ERVLB4_3q28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0400"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "3530"; repStart "-1411"; chr3 rmsk exon 191026822 191028782 13620 - . gene_id "ERVLB4_3q28b"; transcript_id "ERVLB4_3q28b"; locus "ERVLB4_3q28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0400"; repClass "LTR"; repEnd "3529"; repFamily "ERVL"; repLeft "1516"; repStart "-2185"; chr3 rmsk exon 191028857 191029317 2082 - . gene_id "ERVLB4_3q28b"; transcript_id "ERVLB4_3q28b"; locus "ERVLB4_3q28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0400"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "951"; repStart "-4282"; chr3 rmsk exon 191029320 191029918 2061 - . gene_id "ERVLB4_3q28b"; transcript_id "ERVLB4_3q28b"; locus "ERVLB4_3q28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0400"; repClass "LTR"; repEnd "869"; repFamily "ERVL"; repLeft "270"; repStart "-4845"; ### HERVL_3q28b ### chr3 rmsk gene 191308281 191311395 . - . gene_id "HERVL_3q28b"; transcript_id "HERVL_3q28b"; locus "HERVL_3q28b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0331"; model_cov "1355"; model_pct "24.0"; chr3 rmsk exon 191308281 191308509 597 - . gene_id "HERVL_3q28b"; transcript_id "HERVL_3q28b"; locus "HERVL_3q28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0331"; repClass "LTR"; repEnd "3394"; repFamily "ERVL"; repLeft "3166"; repStart "-2260"; chr3 rmsk exon 191308724 191308774 597 - . gene_id "HERVL_3q28b"; transcript_id "HERVL_3q28b"; locus "HERVL_3q28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0331"; repClass "LTR"; repEnd "3165"; repFamily "ERVL"; repLeft "3112"; repStart "-2489"; chr3 rmsk exon 191308762 191308978 516 - . gene_id "HERVL_3q28b"; transcript_id "HERVL_3q28b"; locus "HERVL_3q28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0331"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "2552"; repStart "-2891"; chr3 rmsk exon 191310712 191311395 690 - . gene_id "HERVL_3q28b"; transcript_id "HERVL_3q28b"; locus "HERVL_3q28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0331"; repClass "LTR"; repEnd "2470"; repFamily "ERVL"; repLeft "1607"; repStart "-3184"; ### MER41_3q28 ### chr3 rmsk gene 191449204 191450791 . - . gene_id "MER41_3q28"; transcript_id "MER41_3q28"; locus "MER41_3q28"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0111"; model_cov "757"; model_pct "12.7"; chr3 rmsk exon 191449204 191449747 3912 - . gene_id "MER41_3q28"; transcript_id "MER41_3q28"; locus "MER41_3q28"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0111"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "3"; repStart "-88"; chr3 rmsk exon 191449748 191449995 4744 - . gene_id "MER41_3q28"; transcript_id "MER41_3q28"; locus "MER41_3q28"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0111"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5694"; repStart "0"; chr3 rmsk exon 191450300 191450791 4744 - . gene_id "MER41_3q28"; transcript_id "MER41_3q28"; locus "MER41_3q28"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0111"; repClass "LTR"; repEnd "5693"; repFamily "ERV1"; repLeft "5188"; repStart "-253"; ### ERVLE_3q28b ### chr3 rmsk gene 191555820 191557587 . + . gene_id "ERVLE_3q28b"; transcript_id "ERVLE_3q28b"; locus "ERVLE_3q28b"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0895"; model_cov "651"; model_pct "11.5"; chr3 rmsk exon 191555820 191555908 232 + . gene_id "ERVLE_3q28b"; transcript_id "ERVLE_3q28b"; locus "ERVLE_3q28b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0895"; repClass "LTR"; repEnd "90"; repFamily "ERVL"; repLeft "-573"; repStart "1"; chr3 rmsk exon 191555906 191556249 1238 + . gene_id "ERVLE_3q28b"; transcript_id "ERVLE_3q28b"; locus "ERVLE_3q28b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0895"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "-43"; repStart "271"; chr3 rmsk exon 191556337 191556974 2689 + . gene_id "ERVLE_3q28b"; transcript_id "ERVLE_3q28b"; locus "ERVLE_3q28b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0895"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5016"; chr3 rmsk exon 191557512 191557587 341 + . gene_id "ERVLE_3q28b"; transcript_id "ERVLE_3q28b"; locus "ERVLE_3q28b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0895"; repClass "LTR"; repEnd "591"; repFamily "ERVL"; repLeft "-72"; repStart "515"; ### HERVW_3q28 ### chr3 rmsk gene 191658784 191665592 . + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0082"; model_cov "5942"; model_pct "68.9"; chr3 rmsk exon 191658784 191659314 3992 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "260"; chr3 rmsk exon 191659315 191661687 8869 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "2338"; repFamily "ERV1"; repLeft "-6288"; repStart "1"; chr3 rmsk exon 191661686 191664950 27036 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "-2609"; repStart "2741"; chr3 rmsk exon 191664946 191664984 274 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr3 rmsk exon 191664975 191665266 2332 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr3 rmsk exon 191665267 191665592 2432 + . gene_id "HERVW_3q28"; transcript_id "HERVW_3q28"; locus "HERVW_3q28"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0082"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVH_3q28c ### chr3 rmsk gene 191666260 191672378 . - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0341"; model_cov "5263"; model_pct "68.2"; chr3 rmsk exon 191666260 191666709 3341 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 191666710 191667089 2468 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 191667088 191667303 1328 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 191667305 191667966 4340 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 191667969 191671925 16984 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr3 rmsk exon 191671928 191672378 3365 - . gene_id "HERVH_3q28c"; transcript_id "HERVH_3q28c"; locus "HERVH_3q28c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0341"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVP71A_3q28 ### chr3 rmsk gene 191738212 191744172 . - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0021"; model_cov "4738"; model_pct "62.4"; chr3 rmsk exon 191738212 191738646 2825 - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0021"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 191738647 191741352 20711 - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0021"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "4865"; repStart "0"; chr3 rmsk exon 191741647 191741949 20711 - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0021"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "4499"; repStart "-2726"; chr3 rmsk exon 191742086 191743718 12005 - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0021"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1"; repStart "-5941"; chr3 rmsk exon 191743719 191744172 3179 - . gene_id "HERVP71A_3q28"; transcript_id "HERVP71A_3q28"; locus "HERVP71A_3q28"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0021"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_3q28c ### chr3 rmsk gene 191770257 191772815 . - . gene_id "ERVLE_3q28c"; transcript_id "ERVLE_3q28c"; locus "ERVLE_3q28c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0896"; model_cov "1956"; model_pct "34.5"; chr3 rmsk exon 191770257 191770869 1312 - . gene_id "ERVLE_3q28c"; transcript_id "ERVLE_3q28c"; locus "ERVLE_3q28c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0896"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr3 rmsk exon 191770872 191772815 7039 - . gene_id "ERVLE_3q28c"; transcript_id "ERVLE_3q28c"; locus "ERVLE_3q28c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0896"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "3709"; repStart "-2"; ### ERVLE_3q28d ### chr3 rmsk gene 191775484 191776254 . - . gene_id "ERVLE_3q28d"; transcript_id "ERVLE_3q28d"; locus "ERVLE_3q28d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0897"; model_cov "732"; model_pct "12.9"; chr3 rmsk exon 191775484 191775548 261 - . gene_id "ERVLE_3q28d"; transcript_id "ERVLE_3q28d"; locus "ERVLE_3q28d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0897"; repClass "LTR"; repEnd "3697"; repFamily "ERVL"; repLeft "3631"; repStart "-1970"; chr3 rmsk exon 191775699 191776254 1126 - . gene_id "ERVLE_3q28d"; transcript_id "ERVLE_3q28d"; locus "ERVLE_3q28d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0897"; repClass "LTR"; repEnd "3416"; repFamily "ERVL"; repLeft "2750"; repStart "-2251"; ### ERV316A3_3q28i ### chr3 rmsk gene 191776254 191776777 . - . gene_id "ERV316A3_3q28i"; transcript_id "ERV316A3_3q28i"; locus "ERV316A3_3q28i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0616"; model_cov "541"; model_pct "10.4"; chr3 rmsk exon 191776254 191776777 1016 - . gene_id "ERV316A3_3q28i"; transcript_id "ERV316A3_3q28i"; locus "ERV316A3_3q28i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0616"; repClass "LTR"; repEnd "4091"; repFamily "ERVL"; repLeft "3550"; repStart "-1135"; ### HERVH_3q28d ### chr3 rmsk gene 191895384 191901110 . - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0342"; model_cov "4911"; model_pct "63.7"; chr3 rmsk exon 191895384 191895778 2599 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 191895779 191896154 2387 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 191896153 191896373 1367 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr3 rmsk exon 191896371 191897033 4358 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr3 rmsk exon 191897036 191897537 3473 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr3 rmsk exon 191897528 191897675 911 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr3 rmsk exon 191897670 191900699 19638 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr3 rmsk exon 191900702 191901110 2835 - . gene_id "HERVH_3q28d"; transcript_id "HERVH_3q28d"; locus "HERVH_3q28d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0342"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q28e ### chr3 rmsk gene 192071109 192076858 . - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0344"; model_cov "5050"; model_pct "65.5"; chr3 rmsk exon 192071109 192071522 2560 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3 rmsk exon 192071523 192071900 2349 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr3 rmsk exon 192071899 192072115 1375 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3 rmsk exon 192072120 192072779 4295 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr3 rmsk exon 192072782 192073273 3513 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr3 rmsk exon 192073273 192076442 19951 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr3 rmsk exon 192076445 192076858 2782 - . gene_id "HERVH_3q28e"; transcript_id "HERVH_3q28e"; locus "HERVH_3q28e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0344"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_3q29 ### chr3 rmsk gene 192995645 193001388 . + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0345"; model_cov "4902"; model_pct "63.6"; chr3 rmsk exon 192995645 192996056 2772 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3 rmsk exon 192996059 192999089 19732 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr3 rmsk exon 192999084 192999231 877 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr3 rmsk exon 192999222 192999724 3176 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr3 rmsk exon 192999727 192999998 1888 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "4758"; repFamily "ERV1"; repLeft "-2955"; repStart "4488"; chr3 rmsk exon 193000001 193000389 2333 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4761"; chr3 rmsk exon 193000391 193000606 1280 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr3 rmsk exon 193000607 193000982 2205 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7324"; chr3 rmsk exon 193000984 193001388 2694 + . gene_id "HERVH_3q29"; transcript_id "HERVH_3q29"; locus "HERVH_3q29"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0345"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_3q29a ### chr3 rmsk gene 193854861 193859010 . + . gene_id "ERVLE_3q29a"; transcript_id "ERVLE_3q29a"; locus "ERVLE_3q29a"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0898"; model_cov "3302"; model_pct "58.3"; chr3 rmsk exon 193854861 193855359 733 + . gene_id "ERVLE_3q29a"; transcript_id "ERVLE_3q29a"; locus "ERVLE_3q29a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0898"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "103"; chr3 rmsk exon 193855360 193858499 13770 + . gene_id "ERVLE_3q29a"; transcript_id "ERVLE_3q29a"; locus "ERVLE_3q29a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0898"; repClass "LTR"; repEnd "3265"; repFamily "ERVL"; repLeft "-2402"; repStart "28"; chr3 rmsk exon 193858810 193858873 13770 + . gene_id "ERVLE_3q29a"; transcript_id "ERVLE_3q29a"; locus "ERVLE_3q29a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0898"; repClass "LTR"; repEnd "3331"; repFamily "ERVL"; repLeft "-2336"; repStart "3266"; chr3 rmsk exon 193858874 193859010 242 + . gene_id "ERVLE_3q29a"; transcript_id "ERVLE_3q29a"; locus "ERVLE_3q29a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0898"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "-92"; repStart "429"; ### HERVL_3q29 ### chr3 rmsk gene 193922960 193928783 . + . gene_id "HERVL_3q29"; transcript_id "HERVL_3q29"; locus "HERVL_3q29"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0332"; model_cov "5394"; model_pct "95.4"; chr3 rmsk exon 193922960 193928350 44360 + . gene_id "HERVL_3q29"; transcript_id "HERVL_3q29"; locus "HERVL_3q29"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0332"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "260"; chr3 rmsk exon 193928351 193928783 3047 + . gene_id "HERVL_3q29"; transcript_id "HERVL_3q29"; locus "HERVL_3q29"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0332"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_3q29a ### chr3 rmsk gene 194565602 194567149 . - . gene_id "ERVLB4_3q29a"; transcript_id "ERVLB4_3q29a"; locus "ERVLB4_3q29a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0401"; model_cov "1152"; model_pct "20.2"; chr3 rmsk exon 194565602 194565783 1050 - . gene_id "ERVLB4_3q29a"; transcript_id "ERVLB4_3q29a"; locus "ERVLB4_3q29a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0401"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "1"; repStart "-213"; chr3 rmsk exon 194565927 194566318 6012 - . gene_id "ERVLB4_3q29a"; transcript_id "ERVLB4_3q29a"; locus "ERVLB4_3q29a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0401"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "4592"; repStart "-724"; chr3 rmsk exon 194566427 194567149 6012 - . gene_id "ERVLB4_3q29a"; transcript_id "ERVLB4_3q29a"; locus "ERVLB4_3q29a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0401"; repClass "LTR"; repEnd "4591"; repFamily "ERVL"; repLeft "3837"; repStart "-1123"; ### MER4_3q29a ### chr3 rmsk gene 195602561 195612034 . + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0178"; model_cov "7151"; model_pct "100.0"; chr3 rmsk exon 195602561 195603017 3302 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0178"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 195603021 195603713 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "830"; repFamily "ERV1"; repLeft "-5768"; repStart "1"; chr3 rmsk exon 195604016 195604836 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "-4999"; repStart "263"; chr3 rmsk exon 195605120 195605993 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-3940"; repStart "1600"; chr3 rmsk exon 195606216 195606743 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "3300"; repFamily "ERV1"; repLeft "-3298"; repStart "2659"; chr3 rmsk exon 195607032 195608335 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "4617"; repFamily "ERV1"; repLeft "-1981"; repStart "3301"; chr3 rmsk exon 195608336 195608784 3360 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0178"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 195608785 195608807 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "4647"; repFamily "ERV1"; repLeft "-1951"; repStart "4618"; chr3 rmsk exon 195609531 195609580 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "4771"; repFamily "ERV1"; repLeft "-1827"; repStart "4648"; chr3 rmsk exon 195609786 195609841 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "4917"; repFamily "ERV1"; repLeft "-1681"; repStart "4772"; chr3 rmsk exon 195609965 195609983 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "-1660"; repStart "4918"; chr3 rmsk exon 195610143 195611579 18041 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0178"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "4939"; chr3 rmsk exon 195611587 195612034 3245 + . gene_id "MER4_3q29a"; transcript_id "MER4_3q29a"; locus "MER4_3q29a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0178"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_3q29b ### chr3 rmsk gene 195717357 195718895 . + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0179"; model_cov "942"; model_pct "14.3"; chr3 rmsk exon 195717357 195717808 3164 + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0179"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 195717812 195718319 2390 + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0179"; repClass "LTR"; repEnd "-1197"; repFamily "ERV1"; repLeft "-7795"; repStart "-1671"; chr3 rmsk exon 195718298 195718364 290 + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0179"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "621"; chr3 rmsk exon 195718352 195718462 403 + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0179"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr3 rmsk exon 195718523 195718895 1388 + . gene_id "MER4_3q29b"; transcript_id "MER4_3q29b"; locus "MER4_3q29b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0179"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "-4166"; repStart "2112"; ### MER4_3q29c ### chr3 rmsk gene 195718906 195720473 . + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0180"; model_cov "957"; model_pct "14.5"; chr3 rmsk exon 195718906 195719123 1485 + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0180"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "-6341"; repStart "38"; chr3 rmsk exon 195719121 195719414 1297 + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0180"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "-5646"; repStart "630"; chr3 rmsk exon 195719724 195719815 1297 + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0180"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "-5590"; repStart "953"; chr3 rmsk exon 195719797 195719996 1843 + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0180"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "-4631"; repStart "1764"; chr3 rmsk exon 195720311 195720473 1843 + . gene_id "MER4_3q29c"; transcript_id "MER4_3q29c"; locus "MER4_3q29c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0180"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "-4472"; repStart "1968"; ### HUERSP3_3q29 ### chr3 rmsk gene 196517830 196525490 . + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0047"; model_cov "4989"; model_pct "55.9"; chr3 rmsk exon 196517830 196518467 2705 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr3 rmsk exon 196518596 196518649 232 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "557"; chr3 rmsk exon 196518651 196519277 3356 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-8284"; repStart "1"; chr3 rmsk exon 196519312 196520764 28907 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "2277"; repFamily "ERV1"; repLeft "-6642"; repStart "749"; chr3 rmsk exon 196521733 196522953 28907 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "3491"; repFamily "ERV1"; repLeft "-5428"; repStart "2278"; chr3 rmsk exon 196523260 196524101 28907 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "4316"; repFamily "ERV1"; repLeft "-4603"; repStart "3492"; chr3 rmsk exon 196524384 196524817 28907 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "4739"; repFamily "ERV1"; repLeft "-4180"; repStart "4317"; chr3 rmsk exon 196525126 196525490 28907 + . gene_id "HUERSP3_3q29"; transcript_id "HUERSP3_3q29"; locus "HUERSP3_3q29"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0047"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "-3811"; repStart "4740"; ### HERVIP10F_3q29 ### chr3 rmsk gene 197242966 197248696 . - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0035"; model_cov "4017"; model_pct "51.9"; chr3 rmsk exon 197242966 197243192 1212 - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10F-int_0035"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "266"; repStart "0"; chr3 rmsk exon 197243394 197243574 454 - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0035"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "7548"; repStart "0"; chr3 rmsk exon 197244554 197246823 10942 - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0035"; repClass "LTR"; repEnd "5768"; repFamily "ERV1"; repLeft "3504"; repStart "-1969"; chr3 rmsk exon 197246810 197248473 5397 - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0035"; repClass "LTR"; repEnd "1699"; repFamily "ERV1"; repLeft "135"; repStart "-6038"; chr3 rmsk exon 197248480 197248696 1146 - . gene_id "HERVIP10F_3q29"; transcript_id "HERVIP10F_3q29"; locus "HERVIP10F_3q29"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10F-int_0035"; repClass "LTR"; repEnd "493"; repFamily "ERV1"; repLeft "266"; repStart "-10"; ### HERVIP10FH_3q29 ### chr3 rmsk gene 197242966 197244546 . - . gene_id "HERVIP10FH_3q29"; transcript_id "HERVIP10FH_3q29"; locus "HERVIP10FH_3q29"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0044"; model_cov "988"; model_pct "19.4"; chr3 rmsk exon 197242966 197243192 1212 - . gene_id "HERVIP10FH_3q29"; transcript_id "HERVIP10FH_3q29"; locus "HERVIP10FH_3q29"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10FH-int_0044"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "266"; repStart "0"; chr3 rmsk exon 197243557 197244546 5716 - . gene_id "HERVIP10FH_3q29"; transcript_id "HERVIP10FH_3q29"; locus "HERVIP10FH_3q29"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0044"; repClass "LTR"; repEnd "4710"; repFamily "ERV1"; repLeft "3722"; repStart "-392"; ### MER4_3q29d ### chr3 rmsk gene 197560702 197562205 . + . gene_id "MER4_3q29d"; transcript_id "MER4_3q29d"; locus "MER4_3q29d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0181"; model_cov "1068"; model_pct "16.2"; chr3 rmsk exon 197560702 197561139 3026 + . gene_id "MER4_3q29d"; transcript_id "MER4_3q29d"; locus "MER4_3q29d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0181"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3 rmsk exon 197561143 197561664 2628 + . gene_id "MER4_3q29d"; transcript_id "MER4_3q29d"; locus "MER4_3q29d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0181"; repClass "LTR"; repEnd "613"; repFamily "ERV1"; repLeft "-5985"; repStart "1"; chr3 rmsk exon 197561687 197561794 310 + . gene_id "MER4_3q29d"; transcript_id "MER4_3q29d"; locus "MER4_3q29d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0181"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-5758"; repStart "752"; chr3 rmsk exon 197561857 197562205 1376 + . gene_id "MER4_3q29d"; transcript_id "MER4_3q29d"; locus "MER4_3q29d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0181"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2123"; ### MER4_3q29e ### chr3 rmsk gene 197562225 197567719 . + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0182"; model_cov "4136"; model_pct "62.7"; chr3 rmsk exon 197562225 197562874 4526 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "38"; chr3 rmsk exon 197562887 197563172 1493 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-5560"; repStart "756"; chr3 rmsk exon 197563169 197563334 738 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "1924"; repFamily "ERV1"; repLeft "-4674"; repStart "1756"; chr3 rmsk exon 197563513 197563819 9338 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "3766"; repFamily "ERV1"; repLeft "-2832"; repStart "3445"; chr3 rmsk exon 197564118 197564912 15867 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "4519"; repFamily "ERV1"; repLeft "-2079"; repStart "3881"; chr3 rmsk exon 197565222 197567258 15867 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0182"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4520"; chr3 rmsk exon 197567261 197567719 3379 + . gene_id "MER4_3q29e"; transcript_id "MER4_3q29e"; locus "MER4_3q29e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0182"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### ERVLB4_3q29b ### chr3 rmsk gene 197573828 197574968 . + . gene_id "ERVLB4_3q29b"; transcript_id "ERVLB4_3q29b"; locus "ERVLB4_3q29b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0402"; model_cov "673"; model_pct "11.8"; chr3 rmsk exon 197573828 197574313 3889 + . gene_id "ERVLB4_3q29b"; transcript_id "ERVLB4_3q29b"; locus "ERVLB4_3q29b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0402"; repClass "LTR"; repEnd "5547"; repFamily "ERVL"; repLeft "-167"; repStart "5040"; chr3 rmsk exon 197574763 197574937 3889 + . gene_id "ERVLB4_3q29b"; transcript_id "ERVLB4_3q29b"; locus "ERVLB4_3q29b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0402"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5548"; chr3 rmsk exon 197574939 197574968 225 + . gene_id "ERVLB4_3q29b"; transcript_id "ERVLB4_3q29b"; locus "ERVLB4_3q29b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0402"; repClass "LTR"; repEnd "31"; repFamily "ERVL"; repLeft "-383"; repStart "2"; ### ERV316A3_3q29 ### chr3 rmsk gene 197591652 197592530 . - . gene_id "ERV316A3_3q29"; transcript_id "ERV316A3_3q29"; locus "ERV316A3_3q29"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0618"; model_cov "889"; model_pct "17.0"; chr3 rmsk exon 197591652 197592530 1606 - . gene_id "ERV316A3_3q29"; transcript_id "ERV316A3_3q29"; locus "ERV316A3_3q29"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0618"; repClass "LTR"; repEnd "1808"; repFamily "ERVL"; repLeft "919"; repStart "-3418"; ### MER4_3q29f ### chr3 rmsk gene 197614001 197617792 . - . gene_id "MER4_3q29f"; transcript_id "MER4_3q29f"; locus "MER4_3q29f"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0183"; model_cov "3089"; model_pct "46.8"; chr3 rmsk exon 197614001 197614451 3382 - . gene_id "MER4_3q29f"; transcript_id "MER4_3q29f"; locus "MER4_3q29f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0183"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3 rmsk exon 197614453 197615925 15825 - . gene_id "MER4_3q29f"; transcript_id "MER4_3q29f"; locus "MER4_3q29f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0183"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5088"; repStart "0"; chr3 rmsk exon 197616226 197617466 15825 - . gene_id "MER4_3q29f"; transcript_id "MER4_3q29f"; locus "MER4_3q29f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0183"; repClass "LTR"; repEnd "5087"; repFamily "ERV1"; repLeft "3837"; repStart "-1511"; chr3 rmsk exon 197617434 197617792 1171 - . gene_id "MER4_3q29f"; transcript_id "MER4_3q29f"; locus "MER4_3q29f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0183"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3352"; repStart "-2917"; ### ERVLE_3q29b ### chr3 rmsk gene 197906522 197909169 . - . gene_id "ERVLE_3q29b"; transcript_id "ERVLE_3q29b"; locus "ERVLE_3q29b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0900"; model_cov "1543"; model_pct "27.2"; chr3 rmsk exon 197906522 197907751 2469 - . gene_id "ERVLE_3q29b"; transcript_id "ERVLE_3q29b"; locus "ERVLE_3q29b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0900"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "696"; repStart "-3693"; chr3 rmsk exon 197908922 197909169 605 - . gene_id "ERVLE_3q29b"; transcript_id "ERVLE_3q29b"; locus "ERVLE_3q29b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0900"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "491"; repStart "-4911"; ### PRIMA41_3q29 ### chr3 rmsk gene 198118453 198119647 . + . gene_id "PRIMA41_3q29"; transcript_id "PRIMA41_3q29"; locus "PRIMA41_3q29"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0045"; model_cov "1213"; model_pct "15.6"; chr3 rmsk exon 198118453 198119647 1951 + . gene_id "PRIMA41_3q29"; transcript_id "PRIMA41_3q29"; locus "PRIMA41_3q29"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0045"; repClass "LTR"; repEnd "2482"; repFamily "ERV1"; repLeft "-5274"; repStart "1269"; ### MER61_4p16.3 ### chr4 rmsk gene 94966 101337 . + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0105"; model_cov "4720"; model_pct "90.5"; chr4 rmsk exon 94966 95288 1373 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0105"; repClass "LTR"; repEnd "422"; repFamily "ERV1"; repLeft "-6"; repStart "84"; chr4 rmsk exon 95297 96112 4533 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "866"; repFamily "ERV1"; repLeft "-4351"; repStart "4"; chr4 rmsk exon 96405 96617 4533 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "1077"; repFamily "ERV1"; repLeft "-4140"; repStart "867"; chr4 rmsk exon 96951 97082 4533 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "1078"; chr4 rmsk exon 97078 97348 1194 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "1640"; repFamily "ERV1"; repLeft "-3577"; repStart "1361"; chr4 rmsk exon 97327 98100 9356 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "2771"; repFamily "ERV1"; repLeft "-2446"; repStart "1971"; chr4 rmsk exon 98163 98964 9356 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "3603"; repFamily "ERV1"; repLeft "-1614"; repStart "2772"; chr4 rmsk exon 99260 99299 9356 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "3628"; repFamily "ERV1"; repLeft "-1589"; repStart "3604"; chr4 rmsk exon 99553 101006 9356 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0105"; repClass "LTR"; repEnd "5208"; repFamily "ERV1"; repLeft "-9"; repStart "3629"; chr4 rmsk exon 101030 101337 1588 + . gene_id "MER61_4p16.3"; transcript_id "MER61_4p16.3"; locus "MER61_4p16.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0105"; repClass "LTR"; repEnd "423"; repFamily "ERV1"; repLeft "-5"; repStart "84"; ### HERV4_4p16.3 ### chr4 rmsk gene 174515 175475 . + . gene_id "HERV4_4p16.3"; transcript_id "HERV4_4p16.3"; locus "HERV4_4p16.3"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0030"; model_cov "1328"; model_pct "20.3"; chr4 rmsk exon 174515 175159 836 + . gene_id "HERV4_4p16.3"; transcript_id "HERV4_4p16.3"; locus "HERV4_4p16.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0030"; repClass "LTR"; repEnd "3836"; repFamily "ERV1"; repLeft "-2703"; repStart "2704"; chr4 rmsk exon 175287 175475 299 + . gene_id "HERV4_4p16.3"; transcript_id "HERV4_4p16.3"; locus "HERV4_4p16.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0030"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "-1705"; repStart "4638"; ### HERVW_4p16.3 ### chr4 rmsk gene 191763 197016 . - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0083"; model_cov "5832"; model_pct "67.6"; chr4 rmsk exon 191763 192544 5462 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr4 rmsk exon 192545 192835 2306 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 192826 192863 278 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7511"; repStart "-1078"; chr4 rmsk exon 192858 194772 10688 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr4 rmsk exon 194756 195982 9830 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "795"; repStart "-6610"; chr4 rmsk exon 196249 196943 5539 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "17"; repStart "-7915"; chr4 rmsk exon 196961 197016 246 - . gene_id "HERVW_4p16.3"; transcript_id "HERVW_4p16.3"; locus "HERVW_4p16.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0083"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "725"; repStart "0"; ### HML2_4p16.3a ### chr4 rmsk gene 241200 245565 . + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0030"; model_cov "3299"; model_pct "43.8"; chr4 rmsk exon 241200 242201 7488 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "4"; chr4 rmsk exon 242202 242389 1073 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "198"; repFamily "ERVK"; repLeft "-7338"; repStart "1"; chr4 rmsk exon 242385 245212 15829 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3715"; repFamily "ERVK"; repLeft "-3821"; repStart "873"; chr4 rmsk exon 245308 245565 1656 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3958"; repFamily "ERVK"; repLeft "-3578"; repStart "3698"; ### HERVH_4p16.3a ### chr4 rmsk gene 399612 402791 . - . gene_id "HERVH_4p16.3a"; transcript_id "HERVH_4p16.3a"; locus "HERVH_4p16.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0346"; model_cov "2850"; model_pct "37.0"; chr4 rmsk exon 399612 400000 2729 - . gene_id "HERVH_4p16.3a"; transcript_id "HERVH_4p16.3a"; locus "HERVH_4p16.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0346"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 400001 402791 21799 - . gene_id "HERVH_4p16.3a"; transcript_id "HERVH_4p16.3a"; locus "HERVH_4p16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0346"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4863"; repStart "0"; ### HERVH_4p16.3b ### chr4 rmsk gene 402861 409299 . - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0347"; model_cov "4359"; model_pct "56.5"; chr4 rmsk exon 402861 403251 21799 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7313"; repStart "0"; chr4 rmsk exon 404524 405696 21799 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "5889"; repFamily "ERV1"; repLeft "4416"; repStart "-1824"; chr4 rmsk exon 405697 405984 11530 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "2558"; repStart "-4883"; chr4 rmsk exon 406276 407262 11530 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "2557"; repFamily "ERV1"; repLeft "1614"; repStart "-5156"; chr4 rmsk exon 407581 408403 11530 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "1613"; repFamily "ERV1"; repLeft "800"; repStart "-6100"; chr4 rmsk exon 408430 408909 2010 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr4 rmsk exon 408910 409299 2728 - . gene_id "HERVH_4p16.3b"; transcript_id "HERVH_4p16.3b"; locus "HERVH_4p16.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0347"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_4p16.3 ### chr4 rmsk gene 432971 435817 . + . gene_id "HERVFRD_4p16.3"; transcript_id "HERVFRD_4p16.3"; locus "HERVFRD_4p16.3"; category "internal"; intModel "MER50-int"; locid "MER50-int_0051"; model_cov "1178"; model_pct "16.3"; chr4 rmsk exon 432971 433426 385 + . gene_id "HERVFRD_4p16.3"; transcript_id "HERVFRD_4p16.3"; locus "HERVFRD_4p16.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0051"; repClass "LTR"; repEnd "6243"; repFamily "ERV1"; repLeft "-962"; repStart "5507"; chr4 rmsk exon 435133 435197 251 + . gene_id "HERVFRD_4p16.3"; transcript_id "HERVFRD_4p16.3"; locus "HERVFRD_4p16.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0051"; repClass "LTR"; repEnd "6729"; repFamily "ERV1"; repLeft "-476"; repStart "6665"; chr4 rmsk exon 435442 435817 653 + . gene_id "HERVFRD_4p16.3"; transcript_id "HERVFRD_4p16.3"; locus "HERVFRD_4p16.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0051"; repClass "LTR"; repEnd "6924"; repFamily "ERV1"; repLeft "-281"; repStart "6546"; ### HERVL66_4p16.3 ### chr4 rmsk gene 451175 455252 . + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0010"; model_cov "3115"; model_pct "72.0"; chr4 rmsk exon 451175 451745 3881 + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0010"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 451746 453531 13495 + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0010"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1"; chr4 rmsk exon 453512 453567 313 + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0010"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-1621"; repStart "2654"; chr4 rmsk exon 453559 454696 5097 + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0010"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "3064"; chr4 rmsk exon 454697 455252 4018 + . gene_id "HERVL66_4p16.3"; transcript_id "HERVL66_4p16.3"; locus "HERVL66_4p16.3"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0010"; repClass "LTR"; repEnd "603"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### MER4_4p16.3a ### chr4 rmsk gene 491737 496139 . - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0184"; model_cov "2576"; model_pct "39.0"; chr4 rmsk exon 491737 491872 1385 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "4092"; repFamily "ERV1"; repLeft "3964"; repStart "-2506"; chr4 rmsk exon 492193 492322 1385 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "3837"; repStart "-2635"; chr4 rmsk exon 492378 493136 6504 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "3533"; repFamily "ERV1"; repLeft "2540"; repStart "-3065"; chr4 rmsk exon 493702 494183 6504 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "2529"; repFamily "ERV1"; repLeft "2016"; repStart "-4069"; chr4 rmsk exon 494485 494893 6504 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "2015"; repFamily "ERV1"; repLeft "1604"; repStart "-4583"; chr4 rmsk exon 495182 495459 6504 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "1603"; repFamily "ERV1"; repLeft "1498"; repStart "-4995"; chr4 rmsk exon 495903 495999 640 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "993"; repStart "-5506"; chr4 rmsk exon 495998 496139 369 - . gene_id "MER4_4p16.3a"; transcript_id "MER4_4p16.3a"; locus "MER4_4p16.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0184"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "685"; repStart "-5712"; ### PRIMA4_4p16.3 ### chr4 rmsk gene 496166 497422 . - . gene_id "PRIMA4_4p16.3"; transcript_id "PRIMA4_4p16.3"; locus "PRIMA4_4p16.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0062"; model_cov "1018"; model_pct "12.3"; chr4 rmsk exon 496166 496707 6226 - . gene_id "PRIMA4_4p16.3"; transcript_id "PRIMA4_4p16.3"; locus "PRIMA4_4p16.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0062"; repClass "LTR"; repEnd "1023"; repFamily "ERV1"; repLeft "447"; repStart "-7247"; chr4 rmsk exon 497012 497422 6226 - . gene_id "PRIMA4_4p16.3"; transcript_id "PRIMA4_4p16.3"; locus "PRIMA4_4p16.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0062"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "4"; repStart "-7824"; ### HERVL74_4p16.3 ### chr4 rmsk gene 981650 982755 . + . gene_id "HERVL74_4p16.3"; transcript_id "HERVL74_4p16.3"; locus "HERVL74_4p16.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0018"; model_cov "822"; model_pct "14.5"; chr4 rmsk exon 981650 981816 2422 + . gene_id "HERVL74_4p16.3"; transcript_id "HERVL74_4p16.3"; locus "HERVL74_4p16.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0018"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "-3275"; repStart "2241"; chr4 rmsk exon 982119 982755 2422 + . gene_id "HERVL74_4p16.3"; transcript_id "HERVL74_4p16.3"; locus "HERVL74_4p16.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0018"; repClass "LTR"; repEnd "3064"; repFamily "ERVL"; repLeft "-2621"; repStart "2411"; ### PRIMA41_4p16.3 ### chr4 rmsk gene 2034407 2036405 . - . gene_id "PRIMA41_4p16.3"; transcript_id "PRIMA41_4p16.3"; locus "PRIMA41_4p16.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0047"; model_cov "1594"; model_pct "20.6"; chr4 rmsk exon 2034407 2035350 1751 - . gene_id "PRIMA41_4p16.3"; transcript_id "PRIMA41_4p16.3"; locus "PRIMA41_4p16.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0047"; repClass "LTR"; repEnd "5003"; repFamily "ERV1"; repLeft "4096"; repStart "-2753"; chr4 rmsk exon 2035660 2036405 1751 - . gene_id "PRIMA41_4p16.3"; transcript_id "PRIMA41_4p16.3"; locus "PRIMA41_4p16.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0047"; repClass "LTR"; repEnd "4095"; repFamily "ERV1"; repLeft "3408"; repStart "-3661"; ### LTR23_4p16.3a ### chr4 rmsk gene 2052560 2053628 . + . gene_id "LTR23_4p16.3a"; transcript_id "LTR23_4p16.3a"; locus "LTR23_4p16.3a"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0027"; model_cov "754"; model_pct "14.7"; chr4 rmsk exon 2052560 2053249 1730 + . gene_id "LTR23_4p16.3a"; transcript_id "LTR23_4p16.3a"; locus "LTR23_4p16.3a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0027"; repClass "LTR"; repEnd "1789"; repFamily "ERV1"; repLeft "-3334"; repStart "1144"; chr4 rmsk exon 2053560 2053628 1730 + . gene_id "LTR23_4p16.3a"; transcript_id "LTR23_4p16.3a"; locus "LTR23_4p16.3a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0027"; repClass "LTR"; repEnd "1844"; repFamily "ERV1"; repLeft "-3279"; repStart "1735"; ### LTR23_4p16.3b ### chr4 rmsk gene 2054090 2055917 . + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0028"; model_cov "532"; model_pct "10.4"; chr4 rmsk exon 2054090 2054152 1677 + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0028"; repClass "LTR"; repEnd "1020"; repFamily "ERV1"; repLeft "-4103"; repStart "960"; chr4 rmsk exon 2054542 2054556 1677 + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0028"; repClass "LTR"; repEnd "1023"; repFamily "ERV1"; repLeft "-4100"; repStart "1021"; chr4 rmsk exon 2054863 2055039 1677 + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0028"; repClass "LTR"; repEnd "1197"; repFamily "ERV1"; repLeft "-3926"; repStart "1024"; chr4 rmsk exon 2055346 2055441 1677 + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0028"; repClass "LTR"; repEnd "1294"; repFamily "ERV1"; repLeft "-3829"; repStart "1198"; chr4 rmsk exon 2055698 2055917 1677 + . gene_id "LTR23_4p16.3b"; transcript_id "LTR23_4p16.3b"; locus "LTR23_4p16.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0028"; repClass "LTR"; repEnd "1496"; repFamily "ERV1"; repLeft "-3627"; repStart "1295"; ### ERV316A3_4p16.3a ### chr4 rmsk gene 2215354 2220064 . - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0620"; model_cov "4039"; model_pct "77.3"; chr4 rmsk exon 2215354 2215633 535 - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0620"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "110"; repStart "-1"; chr4 rmsk exon 2215702 2217311 3832 - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0620"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "3501"; repStart "-1"; chr4 rmsk exon 2217386 2217932 1013 - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0620"; repClass "LTR"; repEnd "3357"; repFamily "ERVL"; repLeft "2770"; repStart "-1869"; chr4 rmsk exon 2218456 2219453 2325 - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0620"; repClass "LTR"; repEnd "2755"; repFamily "ERVL"; repLeft "1649"; repStart "-2471"; chr4 rmsk exon 2219474 2220064 2152 - . gene_id "ERV316A3_4p16.3a"; transcript_id "ERV316A3_4p16.3a"; locus "ERV316A3_4p16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0620"; repClass "LTR"; repEnd "1681"; repFamily "ERVL"; repLeft "1059"; repStart "-3545"; ### HERVL_4p16.3a ### chr4 rmsk gene 2737628 2741531 . + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0335"; model_cov "2853"; model_pct "50.5"; chr4 rmsk exon 2737628 2738039 3215 + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0335"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "-2405"; repStart "2836"; chr4 rmsk exon 2738042 2739874 17885 + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0335"; repClass "LTR"; repEnd "5038"; repFamily "ERVL"; repLeft "-616"; repStart "3212"; chr4 rmsk exon 2740175 2740627 17885 + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0335"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "-169"; repStart "5039"; chr4 rmsk exon 2740929 2741098 17885 + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0335"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5486"; chr4 rmsk exon 2741101 2741531 3383 + . gene_id "HERVL_4p16.3a"; transcript_id "HERVL_4p16.3a"; locus "HERVL_4p16.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0335"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### MER4_4p16.3b ### chr4 rmsk gene 2777383 2782408 . - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0185"; model_cov "2208"; model_pct "33.5"; chr4 rmsk exon 2777383 2777704 4667 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "4813"; repFamily "ERV1"; repLeft "4505"; repStart "-1785"; chr4 rmsk exon 2778017 2778446 4418 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "4504"; repFamily "ERV1"; repLeft "4053"; repStart "-2094"; chr4 rmsk exon 2779399 2779492 528 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "4053"; repFamily "ERV1"; repLeft "3961"; repStart "-2545"; chr4 rmsk exon 2779732 2779797 960 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "2367"; repFamily "ERV1"; repLeft "2309"; repStart "-4231"; chr4 rmsk exon 2780098 2780177 960 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "2308"; repFamily "ERV1"; repLeft "2227"; repStart "-4290"; chr4 rmsk exon 2780489 2780910 4559 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "1221"; repFamily "ERV1"; repLeft "763"; repStart "-5377"; chr4 rmsk exon 2781147 2781236 4559 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "762"; repFamily "ERV1"; repLeft "687"; repStart "-5836"; chr4 rmsk exon 2781276 2781930 4559 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0185"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr4 rmsk exon 2781934 2782408 3407 - . gene_id "MER4_4p16.3b"; transcript_id "MER4_4p16.3b"; locus "MER4_4p16.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0185"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4p16.3b ### chr4 rmsk gene 3352892 3354204 . - . gene_id "ERV316A3_4p16.3b"; transcript_id "ERV316A3_4p16.3b"; locus "ERV316A3_4p16.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0622"; model_cov "1307"; model_pct "25.0"; chr4 rmsk exon 3352892 3354204 2499 - . gene_id "ERV316A3_4p16.3b"; transcript_id "ERV316A3_4p16.3b"; locus "ERV316A3_4p16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0622"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "1506"; repStart "-2413"; ### HERVL_4p16.3b ### chr4 rmsk gene 3453754 3460384 . + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0336"; model_cov "5260"; model_pct "93.0"; chr4 rmsk exon 3453754 3453895 678 + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0336"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "-318"; repStart "1"; chr4 rmsk exon 3453908 3454348 3153 + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0336"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 3454349 3456213 38802 + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0336"; repClass "LTR"; repEnd "1852"; repFamily "ERVL"; repLeft "-3802"; repStart "1"; chr4 rmsk exon 3456524 3458303 38802 + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0336"; repClass "LTR"; repEnd "3617"; repFamily "ERVL"; repLeft "-2037"; repStart "1853"; chr4 rmsk exon 3458732 3460384 38802 + . gene_id "HERVL_4p16.3b"; transcript_id "HERVL_4p16.3b"; locus "HERVL_4p16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0336"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "-391"; repStart "3618"; ### ERVLE_4p16.3 ### chr4 rmsk gene 3684875 3685537 . - . gene_id "ERVLE_4p16.3"; transcript_id "ERVLE_4p16.3"; locus "ERVLE_4p16.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0904"; model_cov "613"; model_pct "10.8"; chr4 rmsk exon 3684875 3685157 495 - . gene_id "ERVLE_4p16.3"; transcript_id "ERVLE_4p16.3"; locus "ERVLE_4p16.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0904"; repClass "LTR"; repEnd "4571"; repFamily "ERVL"; repLeft "4280"; repStart "-1096"; chr4 rmsk exon 3685233 3685537 387 - . gene_id "ERVLE_4p16.3"; transcript_id "ERVLE_4p16.3"; locus "ERVLE_4p16.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0904"; repClass "LTR"; repEnd "4276"; repFamily "ERVL"; repLeft "3954"; repStart "-1391"; ### HERVE_4p16.3a ### chr4 rmsk gene 3893334 3897169 . - . gene_id "HERVE_4p16.3a"; transcript_id "HERVE_4p16.3a"; locus "HERVE_4p16.3a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0034"; model_cov "3837"; model_pct "49.1"; chr4 rmsk exon 3893334 3897169 25603 - . gene_id "HERVE_4p16.3a"; transcript_id "HERVE_4p16.3a"; locus "HERVE_4p16.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0034"; repClass "LTR"; repEnd "4945"; repFamily "ERV1"; repLeft "1108"; repStart "-2868"; ### HERVH_4p16.3c ### chr4 rmsk gene 3927446 3933080 . + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0348"; model_cov "4904"; model_pct "63.6"; chr4 rmsk exon 3927446 3927854 2663 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr4 rmsk exon 3927855 3930775 15569 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "5"; chr4 rmsk exon 3930770 3930917 878 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 3930908 3931410 3195 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 3931413 3932074 4126 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 3932076 3932291 1303 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 3932290 3932669 2360 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 3932671 3933080 2778 + . gene_id "HERVH_4p16.3c"; transcript_id "HERVH_4p16.3c"; locus "HERVH_4p16.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0348"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HML2_4p16.3b ### chr4 rmsk gene 3977324 3986912 . - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0031"; model_cov "7535"; model_pct "100.0"; chr4 rmsk exon 3977324 3978367 8576 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 3978368 3985909 45400 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 3985910 3986912 8316 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_4p16.3d ### chr4 rmsk gene 4000090 4005763 . - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0349"; model_cov "5114"; model_pct "66.3"; chr4 rmsk exon 4000090 4000488 2454 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr4 rmsk exon 4000490 4000866 2493 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 4000867 4001076 1277 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 4001078 4001739 4316 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 4001742 4002596 6092 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4 rmsk exon 4002582 4005412 16235 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "1"; repStart "-4720"; chr4 rmsk exon 4005418 4005763 1736 - . gene_id "HERVH_4p16.3d"; transcript_id "HERVH_4p16.3d"; locus "HERVH_4p16.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0349"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HERVS71_4p16.3 ### chr4 rmsk gene 4030241 4037574 . - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0012"; model_cov "6462"; model_pct "72.0"; chr4 rmsk exon 4030241 4030798 4438 - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0012"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 4030799 4031115 2156 - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0012"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr4 rmsk exon 4031113 4033931 13844 - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0012"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr4 rmsk exon 4033942 4037122 22439 - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0012"; repClass "LTR"; repEnd "3235"; repFamily "ERV1"; repLeft "4"; repStart "-5743"; chr4 rmsk exon 4037125 4037574 3402 - . gene_id "HERVS71_4p16.3"; transcript_id "HERVS71_4p16.3"; locus "HERVS71_4p16.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0012"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "110"; repStart "0"; ### HERVK11_4p16.3 ### chr4 rmsk gene 4042123 4049160 . - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0023"; model_cov "6714"; model_pct "84.4"; chr4 rmsk exon 4042123 4043189 8806 - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0023"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 4043190 4045404 9614 - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0023"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "5525"; repStart "0"; chr4 rmsk exon 4045403 4047315 11639 - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0023"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "1165"; repStart "-3352"; chr4 rmsk exon 4047316 4048101 4493 - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0023"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "1"; repStart "-7102"; chr4 rmsk exon 4048102 4049160 8860 - . gene_id "HERVK11_4p16.3"; transcript_id "HERVK11_4p16.3"; locus "HERVK11_4p16.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0023"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_4p16.3 ### chr4 rmsk gene 4109275 4109877 . + . gene_id "ERVLB4_4p16.3"; transcript_id "ERVLB4_4p16.3"; locus "ERVLB4_4p16.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0403"; model_cov "631"; model_pct "11.0"; chr4 rmsk exon 4109275 4109877 3114 + . gene_id "ERVLB4_4p16.3"; transcript_id "ERVLB4_4p16.3"; locus "ERVLB4_4p16.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0403"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_4p16.3b ### chr4 rmsk gene 4130633 4134419 . - . gene_id "HERVE_4p16.3b"; transcript_id "HERVE_4p16.3b"; locus "HERVE_4p16.3b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0035"; model_cov "3837"; model_pct "49.1"; chr4 rmsk exon 4130633 4134419 23804 - . gene_id "HERVE_4p16.3b"; transcript_id "HERVE_4p16.3b"; locus "HERVE_4p16.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0035"; repClass "LTR"; repEnd "4945"; repFamily "ERV1"; repLeft "1108"; repStart "-2868"; ### HERVE_4p16.3c ### chr4 rmsk gene 4160757 4170756 . - . gene_id "HERVE_4p16.3c"; transcript_id "HERVE_4p16.3c"; locus "HERVE_4p16.3c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0036"; model_cov "7891"; model_pct "100.0"; chr4 rmsk exon 4160757 4164813 27371 - . gene_id "HERVE_4p16.3c"; transcript_id "HERVE_4p16.3c"; locus "HERVE_4p16.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0036"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; chr4 rmsk exon 4166924 4170756 26502 - . gene_id "HERVE_4p16.3c"; transcript_id "HERVE_4p16.3c"; locus "HERVE_4p16.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0036"; repClass "LTR"; repEnd "4944"; repFamily "ERV1"; repLeft "1110"; repStart "-2869"; ### ERVLE_4p16.1a ### chr4 rmsk gene 6555799 6556824 . - . gene_id "ERVLE_4p16.1a"; transcript_id "ERVLE_4p16.1a"; locus "ERVLE_4p16.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0907"; model_cov "598"; model_pct "10.6"; chr4 rmsk exon 6555799 6556113 1634 - . gene_id "ERVLE_4p16.1a"; transcript_id "ERVLE_4p16.1a"; locus "ERVLE_4p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0907"; repClass "LTR"; repEnd "4242"; repFamily "ERVL"; repLeft "3918"; repStart "-1425"; chr4 rmsk exon 6556574 6556824 1460 - . gene_id "ERVLE_4p16.1a"; transcript_id "ERVLE_4p16.1a"; locus "ERVLE_4p16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0907"; repClass "LTR"; repEnd "3917"; repFamily "ERVL"; repLeft "3643"; repStart "-1750"; ### ERV316A3_4p16.1a ### chr4 rmsk gene 6570830 6571626 . + . gene_id "ERV316A3_4p16.1a"; transcript_id "ERV316A3_4p16.1a"; locus "ERV316A3_4p16.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0623"; model_cov "826"; model_pct "15.8"; chr4 rmsk exon 6570830 6571626 2000 + . gene_id "ERV316A3_4p16.1a"; transcript_id "ERV316A3_4p16.1a"; locus "ERV316A3_4p16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0623"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "-137"; repStart "4263"; ### MER41_4p16.1a ### chr4 rmsk gene 7084495 7091661 . - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0113"; model_cov "5116"; model_pct "86.0"; chr4 rmsk exon 7084495 7085025 3877 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0113"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 7085026 7086144 11453 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4835"; repStart "-2"; chr4 rmsk exon 7086439 7087062 11453 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "4191"; repStart "-1112"; chr4 rmsk exon 7087069 7087477 3128 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2547"; repFamily "ERV1"; repLeft "1964"; repStart "-3399"; chr4 rmsk exon 7087774 7087801 3128 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2157"; repFamily "ERV1"; repLeft "2137"; repStart "-3789"; chr4 rmsk exon 7088103 7088205 3128 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2136"; repFamily "ERV1"; repLeft "2034"; repStart "-3810"; chr4 rmsk exon 7088501 7088907 3128 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2033"; repFamily "ERV1"; repLeft "1485"; repStart "-3913"; chr4 rmsk exon 7088887 7088954 334 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "2167"; repStart "-3726"; chr4 rmsk exon 7088951 7091049 4009 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1"; repStart "-3929"; chr4 rmsk exon 7091093 7091134 267 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0113"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "1"; repStart "-5903"; chr4 rmsk exon 7091135 7091661 3925 - . gene_id "MER41_4p16.1a"; transcript_id "MER41_4p16.1a"; locus "MER41_4p16.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0113"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4p16.1b ### chr4 rmsk gene 7750967 7752779 . - . gene_id "ERVLE_4p16.1b"; transcript_id "ERVLE_4p16.1b"; locus "ERVLE_4p16.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0908"; model_cov "1500"; model_pct "26.5"; chr4 rmsk exon 7750967 7751417 2710 - . gene_id "ERVLE_4p16.1b"; transcript_id "ERVLE_4p16.1b"; locus "ERVLE_4p16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0908"; repClass "LTR"; repEnd "2744"; repFamily "ERVL"; repLeft "2275"; repStart "-2923"; chr4 rmsk exon 7751793 7752779 2710 - . gene_id "ERVLE_4p16.1b"; transcript_id "ERVLE_4p16.1b"; locus "ERVLE_4p16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0908"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "1243"; repStart "-3393"; ### ERVLE_4p16.1c ### chr4 rmsk gene 7850687 7853092 . + . gene_id "ERVLE_4p16.1c"; transcript_id "ERVLE_4p16.1c"; locus "ERVLE_4p16.1c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0909"; model_cov "2042"; model_pct "36.0"; chr4 rmsk exon 7850687 7851048 320 + . gene_id "ERVLE_4p16.1c"; transcript_id "ERVLE_4p16.1c"; locus "ERVLE_4p16.1c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0909"; repClass "LTR"; repEnd "658"; repFamily "ERVL"; repLeft "-5"; repStart "221"; chr4 rmsk exon 7851061 7851276 384 + . gene_id "ERVLE_4p16.1c"; transcript_id "ERVLE_4p16.1c"; locus "ERVLE_4p16.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0909"; repClass "LTR"; repEnd "3424"; repFamily "ERVL"; repLeft "-2243"; repStart "3205"; chr4 rmsk exon 7851396 7852791 2834 + . gene_id "ERVLE_4p16.1c"; transcript_id "ERVLE_4p16.1c"; locus "ERVLE_4p16.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0909"; repClass "LTR"; repEnd "5402"; repFamily "ERVL"; repLeft "-265"; repStart "3785"; chr4 rmsk exon 7852885 7853092 296 + . gene_id "ERVLE_4p16.1c"; transcript_id "ERVLE_4p16.1c"; locus "ERVLE_4p16.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0909"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5460"; ### MER41_4p16.1b ### chr4 rmsk gene 8358459 8364122 . + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0114"; model_cov "5069"; model_pct "85.3"; chr4 rmsk exon 8358459 8359005 4420 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0114"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 8359092 8359801 4137 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0114"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-5328"; repStart "1"; chr4 rmsk exon 8359788 8360472 6618 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0114"; repClass "LTR"; repEnd "2440"; repFamily "ERV1"; repLeft "-3506"; repStart "2148"; chr4 rmsk exon 8360772 8361141 10011 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0114"; repClass "LTR"; repEnd "3905"; repFamily "ERV1"; repLeft "-2041"; repStart "3606"; chr4 rmsk exon 8361456 8363579 11970 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0114"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2083"; chr4 rmsk exon 8363580 8364122 4327 + . gene_id "MER41_4p16.1b"; transcript_id "MER41_4p16.1b"; locus "MER41_4p16.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0114"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_4p16.1 ### chr4 rmsk gene 8420365 8427765 . + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0085"; model_cov "5412"; model_pct "62.7"; chr4 rmsk exon 8420365 8421127 5571 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 8421145 8421843 5191 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "-7917"; repStart "17"; chr4 rmsk exon 8422115 8422394 1463 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "4653"; repFamily "ERV1"; repLeft "-3973"; repStart "4354"; chr4 rmsk exon 8422381 8422534 914 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "3138"; repFamily "ERV1"; repLeft "-5488"; repStart "3008"; chr4 rmsk exon 8422772 8426705 31230 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "3185"; chr4 rmsk exon 8426702 8426740 281 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 8426731 8427021 2403 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr4 rmsk exon 8427022 8427765 4967 + . gene_id "HERVW_4p16.1"; transcript_id "HERVW_4p16.1"; locus "HERVW_4p16.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0085"; repClass "LTR"; repEnd "740"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### HERV3_4p16.1 ### chr4 rmsk gene 8434382 8439749 . + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0013"; model_cov "4243"; model_pct "50.4"; chr4 rmsk exon 8434382 8435209 3721 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "860"; repFamily "ERV1"; repLeft "-7566"; repStart "1"; chr4 rmsk exon 8435520 8436510 3721 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "1481"; repFamily "ERV1"; repLeft "-6945"; repStart "861"; chr4 rmsk exon 8436511 8436710 1127 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "1920"; repFamily "ERV1"; repLeft "-6506"; repStart "1721"; chr4 rmsk exon 8437151 8437280 572 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "2085"; repFamily "ERV1"; repLeft "-6341"; repStart "1937"; chr4 rmsk exon 8437527 8437923 1948 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "-5957"; repStart "2069"; chr4 rmsk exon 8437904 8438048 574 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-4602"; repStart "3678"; chr4 rmsk exon 8438039 8439266 6439 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "6427"; repFamily "ERV1"; repLeft "-1999"; repStart "5148"; chr4 rmsk exon 8439245 8439749 1408 + . gene_id "HERV3_4p16.1"; transcript_id "HERV3_4p16.1"; locus "HERV3_4p16.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0013"; repClass "LTR"; repEnd "8217"; repFamily "ERV1"; repLeft "-209"; repStart "7625"; ### HERVH_4p16.1a ### chr4 rmsk gene 8482399 8488709 . - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0350"; model_cov "5251"; model_pct "68.1"; chr4 rmsk exon 8482399 8482842 3320 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 8482843 8483218 2333 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 8483217 8483420 1300 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5612"; repStart "-1894"; chr4 rmsk exon 8483440 8484097 4209 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 8484100 8488259 22380 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr4 rmsk exon 8488262 8488709 3276 - . gene_id "HERVH_4p16.1a"; transcript_id "HERVH_4p16.1a"; locus "HERVH_4p16.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0350"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_4p16.1a ### chr4 rmsk gene 8561753 8565476 . - . gene_id "MER4_4p16.1a"; transcript_id "MER4_4p16.1a"; locus "MER4_4p16.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0187"; model_cov "2419"; model_pct "36.7"; chr4 rmsk exon 8561753 8562182 2506 - . gene_id "MER4_4p16.1a"; transcript_id "MER4_4p16.1a"; locus "MER4_4p16.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0187"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr4 rmsk exon 8562208 8563515 8203 - . gene_id "MER4_4p16.1a"; transcript_id "MER4_4p16.1a"; locus "MER4_4p16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0187"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "5284"; repStart "-14"; chr4 rmsk exon 8564122 8565117 8203 - . gene_id "MER4_4p16.1a"; transcript_id "MER4_4p16.1a"; locus "MER4_4p16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0187"; repClass "LTR"; repEnd "5283"; repFamily "ERV1"; repLeft "4191"; repStart "-1315"; chr4 rmsk exon 8565395 8565476 7717 - . gene_id "MER4_4p16.1a"; transcript_id "MER4_4p16.1a"; locus "MER4_4p16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0187"; repClass "LTR"; repEnd "2668"; repFamily "ERV1"; repLeft "2641"; repStart "-3930"; ### MER4_4p16.1b ### chr4 rmsk gene 8565508 8567291 . - . gene_id "MER4_4p16.1b"; transcript_id "MER4_4p16.1b"; locus "MER4_4p16.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0188"; model_cov "1107"; model_pct "16.8"; chr4 rmsk exon 8565508 8565888 7717 - . gene_id "MER4_4p16.1b"; transcript_id "MER4_4p16.1b"; locus "MER4_4p16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0188"; repClass "LTR"; repEnd "4401"; repFamily "ERV1"; repLeft "3786"; repStart "-2197"; chr4 rmsk exon 8566193 8566295 3588 - . gene_id "MER4_4p16.1b"; transcript_id "MER4_4p16.1b"; locus "MER4_4p16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0188"; repClass "LTR"; repEnd "3997"; repFamily "ERV1"; repLeft "3900"; repStart "-2601"; chr4 rmsk exon 8566564 8566830 3588 - . gene_id "MER4_4p16.1b"; transcript_id "MER4_4p16.1b"; locus "MER4_4p16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0188"; repClass "LTR"; repEnd "3899"; repFamily "ERV1"; repLeft "3655"; repStart "-2699"; chr4 rmsk exon 8567142 8567291 3588 - . gene_id "MER4_4p16.1b"; transcript_id "MER4_4p16.1b"; locus "MER4_4p16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0188"; repClass "LTR"; repEnd "3654"; repFamily "ERV1"; repLeft "3503"; repStart "-2944"; ### MER4B_4p16.1a ### chr4 rmsk gene 8567968 8570774 . - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0111"; model_cov "1663"; model_pct "24.6"; chr4 rmsk exon 8567968 8568696 4388 - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0111"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "3"; repStart "-153"; chr4 rmsk exon 8568699 8568816 529 - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0111"; repClass "LTR"; repEnd "3663"; repFamily "ERV1"; repLeft "3544"; repStart "-3095"; chr4 rmsk exon 8569029 8569121 2873 - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0111"; repClass "LTR"; repEnd "2332"; repFamily "ERV1"; repLeft "2253"; repStart "-4426"; chr4 rmsk exon 8569152 8569567 2873 - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0111"; repClass "LTR"; repEnd "2252"; repFamily "ERV1"; repLeft "1827"; repStart "-4506"; chr4 rmsk exon 8569864 8570774 2873 - . gene_id "MER4B_4p16.1a"; transcript_id "MER4B_4p16.1a"; locus "MER4B_4p16.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0111"; repClass "LTR"; repEnd "1826"; repFamily "ERV1"; repLeft "786"; repStart "-4932"; ### MER4B_4p16.1b ### chr4 rmsk gene 8570988 8571889 . - . gene_id "MER4B_4p16.1b"; transcript_id "MER4B_4p16.1b"; locus "MER4B_4p16.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0112"; model_cov "920"; model_pct "13.6"; chr4 rmsk exon 8570988 8571889 5215 - . gene_id "MER4B_4p16.1b"; transcript_id "MER4B_4p16.1b"; locus "MER4B_4p16.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0112"; repClass "LTR"; repEnd "4066"; repFamily "ERV1"; repLeft "3146"; repStart "-2692"; ### MER4_4p16.1c ### chr4 rmsk gene 8927308 8935090 . + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0190"; model_cov "7111"; model_pct "100.0"; chr4 rmsk exon 8927308 8927521 361 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-719"; chr4 rmsk exon 8927634 8927990 1431 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chr4 rmsk exon 8927986 8928591 3794 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-5980"; repStart "13"; chr4 rmsk exon 8928876 8928927 3794 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "619"; chr4 rmsk exon 8928949 8929152 1113 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "-5609"; repStart "764"; chr4 rmsk exon 8929181 8929883 10862 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "2633"; repFamily "ERV1"; repLeft "-3965"; repStart "1670"; chr4 rmsk exon 8930118 8931303 10862 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "4262"; repFamily "ERV1"; repLeft "-2336"; repStart "2634"; chr4 rmsk exon 8931605 8932542 10862 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "5084"; repFamily "ERV1"; repLeft "-1514"; repStart "4117"; chr4 rmsk exon 8932848 8934284 10862 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0190"; repClass "LTR"; repEnd "5704"; repFamily "ERV1"; repLeft "-894"; repStart "3507"; chr4 rmsk exon 8934620 8935090 3347 + . gene_id "MER4_4p16.1c"; transcript_id "MER4_4p16.1c"; locus "MER4_4p16.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0190"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVE_4p16.1a ### chr4 rmsk gene 8942372 8946429 . + . gene_id "HERVE_4p16.1a"; transcript_id "HERVE_4p16.1a"; locus "HERVE_4p16.1a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0037"; model_cov "4057"; model_pct "51.9"; chr4 rmsk exon 8942372 8946429 25594 + . gene_id "HERVE_4p16.1a"; transcript_id "HERVE_4p16.1a"; locus "HERVE_4p16.1a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0037"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_4p16.1b ### chr4 rmsk gene 8973015 8977086 . + . gene_id "HERVE_4p16.1b"; transcript_id "HERVE_4p16.1b"; locus "HERVE_4p16.1b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0038"; model_cov "4057"; model_pct "51.9"; chr4 rmsk exon 8973015 8977086 27489 + . gene_id "HERVE_4p16.1b"; transcript_id "HERVE_4p16.1b"; locus "HERVE_4p16.1b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0038"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### ERVLB4_4p16.1a ### chr4 rmsk gene 8998461 8999063 . - . gene_id "ERVLB4_4p16.1a"; transcript_id "ERVLB4_4p16.1a"; locus "ERVLB4_4p16.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0404"; model_cov "631"; model_pct "11.0"; chr4 rmsk exon 8998461 8999063 2847 - . gene_id "ERVLB4_4p16.1a"; transcript_id "ERVLB4_4p16.1a"; locus "ERVLB4_4p16.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0404"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1473"; repStart "-3610"; ### HERVS71_4p16.1a ### chr4 rmsk gene 9068498 9075838 . + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0013"; model_cov "6463"; model_pct "72.0"; chr4 rmsk exon 9068498 9068947 3278 + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0013"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "110"; chr4 rmsk exon 9068950 9072144 22365 + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0013"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-5742"; repStart "4"; chr4 rmsk exon 9072154 9074972 14014 + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0013"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "4870"; chr4 rmsk exon 9074970 9075286 2261 + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0013"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr4 rmsk exon 9075287 9075838 4460 + . gene_id "HERVS71_4p16.1a"; transcript_id "HERVS71_4p16.1a"; locus "HERVS71_4p16.1a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0013"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_4p16.1b ### chr4 rmsk gene 9094400 9097916 . + . gene_id "HERVH_4p16.1b"; transcript_id "HERVH_4p16.1b"; locus "HERVH_4p16.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0351"; model_cov "3292"; model_pct "42.7"; chr4 rmsk exon 9094400 9094750 1993 + . gene_id "HERVH_4p16.1b"; transcript_id "HERVH_4p16.1b"; locus "HERVH_4p16.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0351"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 9094753 9097625 16103 + . gene_id "HERVH_4p16.1b"; transcript_id "HERVH_4p16.1b"; locus "HERVH_4p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0351"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr4 rmsk exon 9097612 9097916 2083 + . gene_id "HERVH_4p16.1b"; transcript_id "HERVH_4p16.1b"; locus "HERVH_4p16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0351"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-4272"; repStart "3140"; ### HERVE_4p16.1c ### chr4 rmsk gene 9097917 9106252 . + . gene_id "HERVE_4p16.1c"; transcript_id "HERVE_4p16.1c"; locus "HERVE_4p16.1c"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0039"; model_cov "7809"; model_pct "99.9"; chr4 rmsk exon 9097917 9105755 62788 + . gene_id "HERVE_4p16.1c"; transcript_id "HERVE_4p16.1c"; locus "HERVE_4p16.1c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0039"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "3"; chr4 rmsk exon 9105756 9106252 3776 + . gene_id "HERVE_4p16.1c"; transcript_id "HERVE_4p16.1c"; locus "HERVE_4p16.1c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0039"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_4p16.1c ### chr4 rmsk gene 9106253 9108459 . + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0352"; model_cov "1820"; model_pct "23.6"; chr4 rmsk exon 9106253 9106806 4181 + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0352"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3442"; chr4 rmsk exon 9106809 9107470 4328 + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0352"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 9107472 9107682 1367 + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0352"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 9107683 9108060 2436 + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0352"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 9108062 9108459 2517 + . gene_id "HERVH_4p16.1c"; transcript_id "HERVH_4p16.1c"; locus "HERVH_4p16.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0352"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HML2_4p16.1a ### chr4 rmsk gene 9121786 9131367 . + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0034"; model_cov "7446"; model_pct "98.8"; chr4 rmsk exon 9121786 9122809 8752 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 9122810 9130255 44130 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr4 rmsk exon 9130345 9131367 8342 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVE_4p16.1d ### chr4 rmsk gene 9451908 9455959 . + . gene_id "HERVE_4p16.1d"; transcript_id "HERVE_4p16.1d"; locus "HERVE_4p16.1d"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0040"; model_cov "4055"; model_pct "51.9"; chr4 rmsk exon 9451908 9455959 28320 + . gene_id "HERVE_4p16.1d"; transcript_id "HERVE_4p16.1d"; locus "HERVE_4p16.1d"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0040"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1110"; ### HERVE_4p16.1e ### chr4 rmsk gene 9476315 9480369 . + . gene_id "HERVE_4p16.1e"; transcript_id "HERVE_4p16.1e"; locus "HERVE_4p16.1e"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0041"; model_cov "4057"; model_pct "51.9"; chr4 rmsk exon 9476315 9480369 28387 + . gene_id "HERVE_4p16.1e"; transcript_id "HERVE_4p16.1e"; locus "HERVE_4p16.1e"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0041"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_4p16.1f ### chr4 rmsk gene 9507075 9510917 . + . gene_id "HERVE_4p16.1f"; transcript_id "HERVE_4p16.1f"; locus "HERVE_4p16.1f"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0042"; model_cov "3837"; model_pct "49.1"; chr4 rmsk exon 9507075 9510917 25714 + . gene_id "HERVE_4p16.1f"; transcript_id "HERVE_4p16.1f"; locus "HERVE_4p16.1f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0042"; repClass "LTR"; repEnd "4945"; repFamily "ERV1"; repLeft "-2868"; repStart "1108"; ### ERVLB4_4p16.1b ### chr4 rmsk gene 9530034 9530649 . - . gene_id "ERVLB4_4p16.1b"; transcript_id "ERVLB4_4p16.1b"; locus "ERVLB4_4p16.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0405"; model_cov "631"; model_pct "11.0"; chr4 rmsk exon 9530034 9530649 2818 - . gene_id "ERVLB4_4p16.1b"; transcript_id "ERVLB4_4p16.1b"; locus "ERVLB4_4p16.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0405"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1473"; repStart "-3610"; ### HERVS71_4p16.1b ### chr4 rmsk gene 9599829 9607243 . + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0014"; model_cov "6472"; model_pct "72.1"; chr4 rmsk exon 9599829 9600386 4316 + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0014"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 9600389 9603574 21898 + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0014"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-5742"; repStart "4"; chr4 rmsk exon 9603584 9606392 13921 + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0014"; repClass "LTR"; repEnd "7795"; repFamily "ERV1"; repLeft "-1183"; repStart "4870"; chr4 rmsk exon 9606382 9606694 2199 + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0014"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr4 rmsk exon 9606695 9607243 4358 + . gene_id "HERVS71_4p16.1b"; transcript_id "HERVS71_4p16.1b"; locus "HERVS71_4p16.1b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0014"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_4p16.1d ### chr4 rmsk gene 9638973 9644753 . + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0353"; model_cov "5114"; model_pct "66.3"; chr4 rmsk exon 9638973 9639319 1871 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr4 rmsk exon 9639325 9642266 19752 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-4720"; repStart "1"; chr4 rmsk exon 9642252 9643103 6050 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 9643106 9643768 4290 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 9643770 9643980 1279 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 9643981 9644357 2417 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 9644359 9644753 2415 + . gene_id "HERVH_4p16.1d"; transcript_id "HERVH_4p16.1d"; locus "HERVH_4p16.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0353"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HML2_4p16.1b ### chr4 rmsk gene 9657956 9667550 . + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0036"; model_cov "7447"; model_pct "98.8"; chr4 rmsk exon 9657956 9658973 8450 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 9658974 9666434 46859 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "7448"; repFamily "ERVK"; repLeft "-88"; repStart "1"; chr4 rmsk exon 9666525 9667550 8382 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVE_4p16.1g ### chr4 rmsk gene 9760450 9763115 . + . gene_id "HERVE_4p16.1g"; transcript_id "HERVE_4p16.1g"; locus "HERVE_4p16.1g"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0043"; model_cov "2687"; model_pct "34.4"; chr4 rmsk exon 9760450 9763115 18118 + . gene_id "HERVE_4p16.1g"; transcript_id "HERVE_4p16.1g"; locus "HERVE_4p16.1g"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0043"; repClass "LTR"; repEnd "3795"; repFamily "ERV1"; repLeft "-4018"; repStart "1108"; ### MER101_4p16.1 ### chr4 rmsk gene 9967357 9972151 . + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0111"; model_cov "3265"; model_pct "49.2"; chr4 rmsk exon 9967357 9968207 1770 + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0111"; repClass "LTR"; repEnd "2764"; repFamily "ERV1"; repLeft "-3875"; repStart "1546"; chr4 rmsk exon 9968334 9969499 4806 + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0111"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "2493"; chr4 rmsk exon 9970584 9970703 1878 + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0111"; repClass "LTR"; repEnd "6125"; repFamily "ERV1"; repLeft "-514"; repStart "6013"; chr4 rmsk exon 9971192 9971696 1878 + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0111"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "6126"; chr4 rmsk exon 9971697 9972151 2558 + . gene_id "MER101_4p16.1"; transcript_id "MER101_4p16.1"; locus "MER101_4p16.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0111"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4p16.1b ### chr4 rmsk gene 10048089 10049031 . + . gene_id "ERV316A3_4p16.1b"; transcript_id "ERV316A3_4p16.1b"; locus "ERV316A3_4p16.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0624"; model_cov "718"; model_pct "13.7"; chr4 rmsk exon 10048089 10048252 485 + . gene_id "ERV316A3_4p16.1b"; transcript_id "ERV316A3_4p16.1b"; locus "ERV316A3_4p16.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0624"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "-218"; repStart "66"; chr4 rmsk exon 10048294 10048685 833 + . gene_id "ERV316A3_4p16.1b"; transcript_id "ERV316A3_4p16.1b"; locus "ERV316A3_4p16.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0624"; repClass "LTR"; repEnd "2126"; repFamily "ERVL"; repLeft "-3100"; repStart "1733"; chr4 rmsk exon 10048713 10049031 681 + . gene_id "ERV316A3_4p16.1b"; transcript_id "ERV316A3_4p16.1b"; locus "ERV316A3_4p16.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0624"; repClass "LTR"; repEnd "2821"; repFamily "ERVL"; repLeft "-2405"; repStart "2496"; ### HML3_4p16.1a ### chr4 rmsk gene 10169429 10174596 . - . gene_id "HML3_4p16.1a"; transcript_id "HML3_4p16.1a"; locus "HML3_4p16.1a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0054"; model_cov "5296"; model_pct "88.0"; chr4 rmsk exon 10169429 10169891 1915 - . gene_id "HML3_4p16.1a"; transcript_id "HML3_4p16.1a"; locus "HML3_4p16.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0054"; repClass "LTR"; repEnd "5691"; repFamily "ERVK"; repLeft "5196"; repStart "-330"; chr4 rmsk exon 10169915 10172163 13042 - . gene_id "HML3_4p16.1a"; transcript_id "HML3_4p16.1a"; locus "HML3_4p16.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0054"; repClass "LTR"; repEnd "4451"; repFamily "ERVK"; repLeft "1641"; repStart "-1570"; chr4 rmsk exon 10172162 10174126 10410 - . gene_id "HML3_4p16.1a"; transcript_id "HML3_4p16.1a"; locus "HML3_4p16.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0054"; repClass "LTR"; repEnd "1917"; repFamily "ERVK"; repLeft "-74"; repStart "-4104"; chr4 rmsk exon 10174127 10174596 2891 - . gene_id "HML3_4p16.1a"; transcript_id "HML3_4p16.1a"; locus "HML3_4p16.1a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0054"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_4p16.1d ### chr4 rmsk gene 10188479 10189738 . - . gene_id "ERVLE_4p16.1d"; transcript_id "ERVLE_4p16.1d"; locus "ERVLE_4p16.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0914"; model_cov "870"; model_pct "15.4"; chr4 rmsk exon 10188479 10188893 573 - . gene_id "ERVLE_4p16.1d"; transcript_id "ERVLE_4p16.1d"; locus "ERVLE_4p16.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0914"; repClass "LTR"; repEnd "3959"; repFamily "ERVL"; repLeft "3453"; repStart "-1708"; chr4 rmsk exon 10189361 10189502 266 - . gene_id "ERVLE_4p16.1d"; transcript_id "ERVLE_4p16.1d"; locus "ERVLE_4p16.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0914"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "2726"; repStart "-2787"; chr4 rmsk exon 10189498 10189738 333 - . gene_id "ERVLE_4p16.1d"; transcript_id "ERVLE_4p16.1d"; locus "ERVLE_4p16.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0914"; repClass "LTR"; repEnd "3451"; repFamily "ERVL"; repLeft "3241"; repStart "-2216"; ### ERVLE_4p16.1e ### chr4 rmsk gene 10206783 10207559 . - . gene_id "ERVLE_4p16.1e"; transcript_id "ERVLE_4p16.1e"; locus "ERVLE_4p16.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0915"; model_cov "749"; model_pct "13.2"; chr4 rmsk exon 10206783 10206948 291 - . gene_id "ERVLE_4p16.1e"; transcript_id "ERVLE_4p16.1e"; locus "ERVLE_4p16.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0915"; repClass "LTR"; repEnd "3391"; repFamily "ERVL"; repLeft "3175"; repStart "-2276"; chr4 rmsk exon 10207057 10207559 515 - . gene_id "ERVLE_4p16.1e"; transcript_id "ERVLE_4p16.1e"; locus "ERVLE_4p16.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0915"; repClass "LTR"; repEnd "3047"; repFamily "ERVL"; repLeft "2514"; repStart "-2620"; ### HERVL40_4p16.1 ### chr4 rmsk gene 10217409 10218296 . - . gene_id "HERVL40_4p16.1"; transcript_id "HERVL40_4p16.1"; locus "HERVL40_4p16.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0087"; model_cov "869"; model_pct "15.7"; chr4 rmsk exon 10217409 10217609 527 - . gene_id "HERVL40_4p16.1"; transcript_id "HERVL40_4p16.1"; locus "HERVL40_4p16.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0087"; repClass "LTR"; repEnd "4638"; repFamily "ERVL"; repLeft "4427"; repStart "-892"; chr4 rmsk exon 10217609 10217942 416 - . gene_id "HERVL40_4p16.1"; transcript_id "HERVL40_4p16.1"; locus "HERVL40_4p16.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0087"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "3994"; repStart "-1240"; chr4 rmsk exon 10217926 10218044 385 - . gene_id "HERVL40_4p16.1"; transcript_id "HERVL40_4p16.1"; locus "HERVL40_4p16.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0087"; repClass "LTR"; repEnd "3882"; repFamily "ERVL"; repLeft "3756"; repStart "-1648"; chr4 rmsk exon 10218054 10218296 435 - . gene_id "HERVL40_4p16.1"; transcript_id "HERVL40_4p16.1"; locus "HERVL40_4p16.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0087"; repClass "LTR"; repEnd "4242"; repFamily "ERVL"; repLeft "4006"; repStart "-1288"; ### ERV316A3_4p16.1c ### chr4 rmsk gene 10221301 10223979 . - . gene_id "ERV316A3_4p16.1c"; transcript_id "ERV316A3_4p16.1c"; locus "ERV316A3_4p16.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0625"; model_cov "1901"; model_pct "36.4"; chr4 rmsk exon 10221301 10221667 806 - . gene_id "ERV316A3_4p16.1c"; transcript_id "ERV316A3_4p16.1c"; locus "ERV316A3_4p16.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0625"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "3"; repStart "-35"; chr4 rmsk exon 10222029 10223751 2034 - . gene_id "ERV316A3_4p16.1c"; transcript_id "ERV316A3_4p16.1c"; locus "ERV316A3_4p16.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0625"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "2958"; repStart "-367"; chr4 rmsk exon 10223752 10223979 554 - . gene_id "ERV316A3_4p16.1c"; transcript_id "ERV316A3_4p16.1c"; locus "ERV316A3_4p16.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0625"; repClass "LTR"; repEnd "292"; repFamily "ERVL"; repLeft "46"; repStart "-159"; ### ERVLE_4p16.1f ### chr4 rmsk gene 10228843 10229900 . - . gene_id "ERVLE_4p16.1f"; transcript_id "ERVLE_4p16.1f"; locus "ERVLE_4p16.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0916"; model_cov "803"; model_pct "14.2"; chr4 rmsk exon 10228843 10229118 545 - . gene_id "ERVLE_4p16.1f"; transcript_id "ERVLE_4p16.1f"; locus "ERVLE_4p16.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0916"; repClass "LTR"; repEnd "3733"; repFamily "ERVL"; repLeft "3425"; repStart "-1934"; chr4 rmsk exon 10229216 10229303 342 - . gene_id "ERVLE_4p16.1f"; transcript_id "ERVLE_4p16.1f"; locus "ERVLE_4p16.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0916"; repClass "LTR"; repEnd "3309"; repFamily "ERVL"; repLeft "3215"; repStart "-2358"; chr4 rmsk exon 10229400 10229589 452 - . gene_id "ERVLE_4p16.1f"; transcript_id "ERVLE_4p16.1f"; locus "ERVLE_4p16.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0916"; repClass "LTR"; repEnd "3075"; repFamily "ERVL"; repLeft "2874"; repStart "-2592"; chr4 rmsk exon 10229715 10229900 454 - . gene_id "ERVLE_4p16.1f"; transcript_id "ERVLE_4p16.1f"; locus "ERVLE_4p16.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0916"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "2515"; repStart "-2952"; ### HML3_4p16.1b ### chr4 rmsk gene 10296532 10303470 . - . gene_id "HML3_4p16.1b"; transcript_id "HML3_4p16.1b"; locus "HML3_4p16.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0055"; model_cov "6409"; model_pct "100.0"; chr4 rmsk exon 10296532 10296959 2918 - . gene_id "HML3_4p16.1b"; transcript_id "HML3_4p16.1b"; locus "HML3_4p16.1b"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0055"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 10296960 10302088 24646 - . gene_id "HML3_4p16.1b"; transcript_id "HML3_4p16.1b"; locus "HML3_4p16.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0055"; repClass "LTR"; repEnd "5956"; repFamily "ERVK"; repLeft "225"; repStart "-65"; chr4 rmsk exon 10302085 10302983 3430 - . gene_id "HML3_4p16.1b"; transcript_id "HML3_4p16.1b"; locus "HML3_4p16.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0055"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "1"; repStart "-5342"; chr4 rmsk exon 10302984 10303470 3287 - . gene_id "HML3_4p16.1b"; transcript_id "HML3_4p16.1b"; locus "HML3_4p16.1b"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0055"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "8"; repStart "0"; ### ERV316A3_4p16.1d ### chr4 rmsk gene 10947811 10949726 . + . gene_id "ERV316A3_4p16.1d"; transcript_id "ERV316A3_4p16.1d"; locus "ERV316A3_4p16.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0626"; model_cov "1162"; model_pct "22.2"; chr4 rmsk exon 10947811 10948855 1855 + . gene_id "ERV316A3_4p16.1d"; transcript_id "ERV316A3_4p16.1d"; locus "ERV316A3_4p16.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0626"; repClass "LTR"; repEnd "4719"; repFamily "ERVL"; repLeft "-507"; repStart "3668"; chr4 rmsk exon 10949254 10949377 1855 + . gene_id "ERV316A3_4p16.1d"; transcript_id "ERV316A3_4p16.1d"; locus "ERV316A3_4p16.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0626"; repClass "LTR"; repEnd "5099"; repFamily "ERVL"; repLeft "-127"; repStart "4988"; chr4 rmsk exon 10949387 10949726 846 + . gene_id "ERV316A3_4p16.1d"; transcript_id "ERV316A3_4p16.1d"; locus "ERV316A3_4p16.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0626"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-1"; repStart "125"; ### ERV316A3_4p16.1e ### chr4 rmsk gene 11086393 11087056 . - . gene_id "ERV316A3_4p16.1e"; transcript_id "ERV316A3_4p16.1e"; locus "ERV316A3_4p16.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0627"; model_cov "661"; model_pct "12.6"; chr4 rmsk exon 11086393 11087056 645 - . gene_id "ERV316A3_4p16.1e"; transcript_id "ERV316A3_4p16.1e"; locus "ERV316A3_4p16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0627"; repClass "LTR"; repEnd "4253"; repFamily "ERVL"; repLeft "3592"; repStart "-973"; ### ERV316A3_4p16.1f ### chr4 rmsk gene 11149646 11151554 . + . gene_id "ERV316A3_4p16.1f"; transcript_id "ERV316A3_4p16.1f"; locus "ERV316A3_4p16.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0628"; model_cov "810"; model_pct "15.5"; chr4 rmsk exon 11149646 11149712 240 + . gene_id "ERV316A3_4p16.1f"; transcript_id "ERV316A3_4p16.1f"; locus "ERV316A3_4p16.1f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0628"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-10"; repStart "411"; chr4 rmsk exon 11149719 11150016 298 + . gene_id "ERV316A3_4p16.1f"; transcript_id "ERV316A3_4p16.1f"; locus "ERV316A3_4p16.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0628"; repClass "LTR"; repEnd "299"; repFamily "ERVL"; repLeft "-4927"; repStart "7"; chr4 rmsk exon 11150706 11150844 664 + . gene_id "ERV316A3_4p16.1f"; transcript_id "ERV316A3_4p16.1f"; locus "ERV316A3_4p16.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0628"; repClass "LTR"; repEnd "1033"; repFamily "ERVL"; repLeft "-4193"; repStart "887"; chr4 rmsk exon 11151204 11151554 664 + . gene_id "ERV316A3_4p16.1f"; transcript_id "ERV316A3_4p16.1f"; locus "ERV316A3_4p16.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0628"; repClass "LTR"; repEnd "1406"; repFamily "ERVL"; repLeft "-3820"; repStart "1034"; ### ERV316A3_4p16.1g ### chr4 rmsk gene 11225121 11227868 . - . gene_id "ERV316A3_4p16.1g"; transcript_id "ERV316A3_4p16.1g"; locus "ERV316A3_4p16.1g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0629"; model_cov "1599"; model_pct "30.6"; chr4 rmsk exon 11225121 11225571 847 - . gene_id "ERV316A3_4p16.1g"; transcript_id "ERV316A3_4p16.1g"; locus "ERV316A3_4p16.1g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0629"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr4 rmsk exon 11225642 11227029 2640 - . gene_id "ERV316A3_4p16.1g"; transcript_id "ERV316A3_4p16.1g"; locus "ERV316A3_4p16.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0629"; repClass "LTR"; repEnd "1824"; repFamily "ERVL"; repLeft "412"; repStart "-3402"; chr4 rmsk exon 11227120 11227299 388 - . gene_id "ERV316A3_4p16.1g"; transcript_id "ERV316A3_4p16.1g"; locus "ERV316A3_4p16.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0629"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "95"; repStart "-4944"; chr4 rmsk exon 11227418 11227868 1330 - . gene_id "ERV316A3_4p16.1g"; transcript_id "ERV316A3_4p16.1g"; locus "ERV316A3_4p16.1g"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0629"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "-3"; ### ERVL_4p15.33 ### chr4 rmsk gene 11374322 11375033 . + . gene_id "ERVL_4p15.33"; transcript_id "ERVL_4p15.33"; locus "ERVL_4p15.33"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0094"; model_cov "732"; model_pct "12.7"; chr4 rmsk exon 11374322 11375033 4113 + . gene_id "ERVL_4p15.33"; transcript_id "ERVL_4p15.33"; locus "ERVL_4p15.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0094"; repClass "LTR"; repEnd "3930"; repFamily "ERVL"; repLeft "-1827"; repStart "3198"; ### HERVH_4p15.33a ### chr4 rmsk gene 11653569 11659254 . - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0354"; model_cov "5116"; model_pct "66.3"; chr4 rmsk exon 11653569 11653967 2556 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 11653968 11654344 2248 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 11654345 11654558 1249 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 11654560 11655222 4114 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 11655225 11656079 5964 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4 rmsk exon 11656059 11658856 14450 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 11658859 11659254 2537 - . gene_id "HERVH_4p15.33a"; transcript_id "HERVH_4p15.33a"; locus "HERVH_4p15.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0354"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_4p15.33b ### chr4 rmsk gene 11806284 11811938 . + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0355"; model_cov "4906"; model_pct "63.6"; chr4 rmsk exon 11806284 11806743 3046 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 11806746 11809681 14622 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 11809676 11809823 801 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 11809814 11810318 3096 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 11810321 11810983 4170 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 11810985 11811202 1243 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 11811203 11811579 2262 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 11811580 11811938 2137 + . gene_id "HERVH_4p15.33b"; transcript_id "HERVH_4p15.33b"; locus "HERVH_4p15.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0355"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_4p15.33c ### chr4 rmsk gene 12363888 12369679 . + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0356"; model_cov "5108"; model_pct "66.2"; chr4 rmsk exon 12363888 12364267 2261 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "23"; chr4 rmsk exon 12364270 12367169 19144 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 12367164 12368017 6276 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 12368020 12368682 4330 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 12368684 12368899 1330 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 12368900 12369278 2440 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 12369279 12369679 2541 + . gene_id "HERVH_4p15.33c"; transcript_id "HERVH_4p15.33c"; locus "HERVH_4p15.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0356"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_4p15.33 ### chr4 rmsk gene 12386687 12389960 . - . gene_id "HERVL_4p15.33"; transcript_id "HERVL_4p15.33"; locus "HERVL_4p15.33"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0338"; model_cov "2659"; model_pct "47.0"; chr4 rmsk exon 12386687 12386950 1773 - . gene_id "HERVL_4p15.33"; transcript_id "HERVL_4p15.33"; locus "HERVL_4p15.33"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0338"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "49"; repStart "-52"; chr4 rmsk exon 12386952 12389608 18184 - . gene_id "HERVL_4p15.33"; transcript_id "HERVL_4p15.33"; locus "HERVL_4p15.33"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0338"; repClass "LTR"; repEnd "2700"; repFamily "ERVL"; repLeft "41"; repStart "-2954"; chr4 rmsk exon 12389609 12389960 2380 - . gene_id "HERVL_4p15.33"; transcript_id "HERVL_4p15.33"; locus "HERVL_4p15.33"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0338"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "5"; repStart "-77"; ### ERV316A3_4p15.33a ### chr4 rmsk gene 12408246 12412007 . + . gene_id "ERV316A3_4p15.33a"; transcript_id "ERV316A3_4p15.33a"; locus "ERV316A3_4p15.33a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0631"; model_cov "2442"; model_pct "46.7"; chr4 rmsk exon 12408246 12409103 661 + . gene_id "ERV316A3_4p15.33a"; transcript_id "ERV316A3_4p15.33a"; locus "ERV316A3_4p15.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0631"; repClass "LTR"; repEnd "2958"; repFamily "ERVL"; repLeft "-2268"; repStart "2088"; chr4 rmsk exon 12409633 12410598 1780 + . gene_id "ERV316A3_4p15.33a"; transcript_id "ERV316A3_4p15.33a"; locus "ERV316A3_4p15.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0631"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "-1671"; repStart "2615"; chr4 rmsk exon 12410959 12411561 1780 + . gene_id "ERV316A3_4p15.33a"; transcript_id "ERV316A3_4p15.33a"; locus "ERV316A3_4p15.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0631"; repClass "LTR"; repEnd "4188"; repFamily "ERVL"; repLeft "-1038"; repStart "3556"; chr4 rmsk exon 12411737 12412007 554 + . gene_id "ERV316A3_4p15.33a"; transcript_id "ERV316A3_4p15.33a"; locus "ERV316A3_4p15.33a"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0631"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "-36"; repStart "237"; ### MER4_4p15.33 ### chr4 rmsk gene 12420996 12425702 . + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0192"; model_cov "4779"; model_pct "72.4"; chr4 rmsk exon 12420996 12421365 2216 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0192"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "-114"; repStart "129"; chr4 rmsk exon 12421930 12421995 492 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0192"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "599"; chr4 rmsk exon 12421999 12422198 600 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0192"; repClass "LTR"; repEnd "-1474"; repFamily "ERV1"; repLeft "-8072"; repStart "-1671"; chr4 rmsk exon 12422213 12423866 6059 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0192"; repClass "LTR"; repEnd "4184"; repFamily "ERV1"; repLeft "-2414"; repStart "1477"; chr4 rmsk exon 12423864 12424553 8070 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0192"; repClass "LTR"; repEnd "5202"; repFamily "ERV1"; repLeft "-1396"; repStart "4481"; chr4 rmsk exon 12424601 12425702 8070 + . gene_id "MER4_4p15.33"; transcript_id "MER4_4p15.33"; locus "MER4_4p15.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0192"; repClass "LTR"; repEnd "6357"; repFamily "ERV1"; repLeft "-241"; repStart "5203"; ### HERVIP10FH_4p15.33 ### chr4 rmsk gene 12425703 12431652 . - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0047"; model_cov "4331"; model_pct "84.9"; chr4 rmsk exon 12425703 12426260 3195 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "7"; repStart "0"; chr4 rmsk exon 12426267 12426654 3214 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "4716"; repStart "0"; chr4 rmsk exon 12426657 12428449 23196 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "3948"; repFamily "ERV1"; repLeft "2145"; repStart "-1154"; chr4 rmsk exon 12428750 12429536 23196 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "2144"; repFamily "ERV1"; repLeft "1330"; repStart "-2958"; chr4 rmsk exon 12429567 12431107 23196 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "1329"; repFamily "ERV1"; repLeft "1"; repStart "-3773"; chr4 rmsk exon 12431108 12431652 3510 - . gene_id "HERVIP10FH_4p15.33"; transcript_id "HERVIP10FH_4p15.33"; locus "HERVIP10FH_4p15.33"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0047"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4p15.33b ### chr4 rmsk gene 12434311 12436076 . + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0632"; model_cov "1094"; model_pct "20.9"; chr4 rmsk exon 12434311 12434515 425 + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0632"; repClass "LTR"; repEnd "2989"; repFamily "ERVL"; repLeft "-2237"; repStart "2785"; chr4 rmsk exon 12434576 12434635 259 + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0632"; repClass "LTR"; repEnd "3225"; repFamily "ERVL"; repLeft "-2001"; repStart "3165"; chr4 rmsk exon 12434748 12434883 311 + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0632"; repClass "LTR"; repEnd "3481"; repFamily "ERVL"; repLeft "-1745"; repStart "3346"; chr4 rmsk exon 12435084 12435363 428 + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0632"; repClass "LTR"; repEnd "4263"; repFamily "ERVL"; repLeft "-963"; repStart "3965"; chr4 rmsk exon 12435668 12436076 307 + . gene_id "ERV316A3_4p15.33b"; transcript_id "ERV316A3_4p15.33b"; locus "ERV316A3_4p15.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0632"; repClass "LTR"; repEnd "4715"; repFamily "ERVL"; repLeft "-511"; repStart "4318"; ### ERVLE_4p15.33 ### chr4 rmsk gene 12452512 12454239 . + . gene_id "ERVLE_4p15.33"; transcript_id "ERVLE_4p15.33"; locus "ERVLE_4p15.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0918"; model_cov "973"; model_pct "17.2"; chr4 rmsk exon 12452512 12452879 533 + . gene_id "ERVLE_4p15.33"; transcript_id "ERVLE_4p15.33"; locus "ERVLE_4p15.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0918"; repClass "LTR"; repEnd "4319"; repFamily "ERVL"; repLeft "-1348"; repStart "3935"; chr4 rmsk exon 12452870 12453194 573 + . gene_id "ERVLE_4p15.33"; transcript_id "ERVLE_4p15.33"; locus "ERVLE_4p15.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0918"; repClass "LTR"; repEnd "4501"; repFamily "ERVL"; repLeft "-1166"; repStart "4108"; chr4 rmsk exon 12454044 12454239 389 + . gene_id "ERVLE_4p15.33"; transcript_id "ERVLE_4p15.33"; locus "ERVLE_4p15.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0918"; repClass "LTR"; repEnd "5071"; repFamily "ERVL"; repLeft "-596"; repStart "4875"; ### ERV316A3_4p15.33c ### chr4 rmsk gene 12542212 12543041 . + . gene_id "ERV316A3_4p15.33c"; transcript_id "ERV316A3_4p15.33c"; locus "ERV316A3_4p15.33c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0633"; model_cov "953"; model_pct "18.2"; chr4 rmsk exon 12542212 12543041 1915 + . gene_id "ERV316A3_4p15.33c"; transcript_id "ERV316A3_4p15.33c"; locus "ERV316A3_4p15.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0633"; repClass "LTR"; repEnd "2841"; repFamily "ERVL"; repLeft "-2385"; repStart "1888"; ### ERV316A3_4p15.33d ### chr4 rmsk gene 12616456 12618402 . + . gene_id "ERV316A3_4p15.33d"; transcript_id "ERV316A3_4p15.33d"; locus "ERV316A3_4p15.33d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0635"; model_cov "871"; model_pct "16.7"; chr4 rmsk exon 12616456 12616644 370 + . gene_id "ERV316A3_4p15.33d"; transcript_id "ERV316A3_4p15.33d"; locus "ERV316A3_4p15.33d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0635"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "-238"; repStart "2"; chr4 rmsk exon 12616706 12616829 2346 + . gene_id "ERV316A3_4p15.33d"; transcript_id "ERV316A3_4p15.33d"; locus "ERV316A3_4p15.33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0635"; repClass "LTR"; repEnd "3574"; repFamily "ERVL"; repLeft "-1652"; repStart "3449"; chr4 rmsk exon 12617550 12618203 2346 + . gene_id "ERV316A3_4p15.33d"; transcript_id "ERV316A3_4p15.33d"; locus "ERV316A3_4p15.33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0635"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "-1023"; repStart "3575"; chr4 rmsk exon 12618289 12618402 371 + . gene_id "ERV316A3_4p15.33d"; transcript_id "ERV316A3_4p15.33d"; locus "ERV316A3_4p15.33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0635"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "-640"; repStart "4468"; ### ERV316A3_4p15.33e ### chr4 rmsk gene 14050624 14051151 . - . gene_id "ERV316A3_4p15.33e"; transcript_id "ERV316A3_4p15.33e"; locus "ERV316A3_4p15.33e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0636"; model_cov "543"; model_pct "10.4"; chr4 rmsk exon 14050624 14051151 523 - . gene_id "ERV316A3_4p15.33e"; transcript_id "ERV316A3_4p15.33e"; locus "ERV316A3_4p15.33e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0636"; repClass "LTR"; repEnd "4857"; repFamily "ERVL"; repLeft "4314"; repStart "-369"; ### ERV316A3_4p15.33f ### chr4 rmsk gene 14076910 14082179 . - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0637"; model_cov "4639"; model_pct "88.8"; chr4 rmsk exon 14076910 14077157 367 - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0637"; repClass "LTR"; repEnd "333"; repFamily "ERVL"; repLeft "87"; repStart "-89"; chr4 rmsk exon 14077221 14077504 647 - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0637"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4944"; repStart "0"; chr4 rmsk exon 14077542 14079568 4239 - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0637"; repClass "LTR"; repEnd "4851"; repFamily "ERVL"; repLeft "2782"; repStart "-375"; chr4 rmsk exon 14079680 14081855 3836 - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0637"; repClass "LTR"; repEnd "2300"; repFamily "ERVL"; repLeft "12"; repStart "-2926"; chr4 rmsk exon 14081864 14082179 809 - . gene_id "ERV316A3_4p15.33f"; transcript_id "ERV316A3_4p15.33f"; locus "ERV316A3_4p15.33f"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0637"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "103"; repStart "-1"; ### HERVH_4p15.33d ### chr4 rmsk gene 14169948 14175976 . - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0357"; model_cov "5444"; model_pct "70.6"; chr4 rmsk exon 14169948 14170399 3421 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 14170400 14170782 2262 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 14170783 14170994 1303 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 14170996 14172720 8279 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "6421"; repFamily "ERV1"; repLeft "4551"; repStart "-1292"; chr4 rmsk exon 14172711 14175371 15714 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "477"; repStart "-4423"; chr4 rmsk exon 14175370 14175523 1053 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "154"; repFamily "ERV1"; repLeft "1"; repStart "-7559"; chr4 rmsk exon 14175526 14175976 3434 - . gene_id "HERVH_4p15.33d"; transcript_id "HERVH_4p15.33d"; locus "HERVH_4p15.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0357"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4p15.33g ### chr4 rmsk gene 14311736 14312811 . + . gene_id "ERV316A3_4p15.33g"; transcript_id "ERV316A3_4p15.33g"; locus "ERV316A3_4p15.33g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0638"; model_cov "621"; model_pct "11.9"; chr4 rmsk exon 14311736 14312012 895 + . gene_id "ERV316A3_4p15.33g"; transcript_id "ERV316A3_4p15.33g"; locus "ERV316A3_4p15.33g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0638"; repClass "LTR"; repEnd "4750"; repFamily "ERVL"; repLeft "-476"; repStart "4467"; chr4 rmsk exon 14312072 14312394 821 + . gene_id "ERV316A3_4p15.33g"; transcript_id "ERV316A3_4p15.33g"; locus "ERV316A3_4p15.33g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0638"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4888"; chr4 rmsk exon 14312408 14312811 1130 + . gene_id "ERV316A3_4p15.33g"; transcript_id "ERV316A3_4p15.33g"; locus "ERV316A3_4p15.33g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0638"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-12"; repStart "14"; ### ERVLB4_4p15.33 ### chr4 rmsk gene 14533509 14534980 . - . gene_id "ERVLB4_4p15.33"; transcript_id "ERVLB4_4p15.33"; locus "ERVLB4_4p15.33"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0409"; model_cov "912"; model_pct "16.0"; chr4 rmsk exon 14533509 14534402 4365 - . gene_id "ERVLB4_4p15.33"; transcript_id "ERVLB4_4p15.33"; locus "ERVLB4_4p15.33"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0409"; repClass "LTR"; repEnd "915"; repFamily "ERVL"; repLeft "3"; repStart "-4799"; chr4 rmsk exon 14534433 14534980 2216 - . gene_id "ERVLB4_4p15.33"; transcript_id "ERVLB4_4p15.33"; locus "ERVLB4_4p15.33"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0409"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "5"; repStart "-42"; ### HERVIP10FH_4p15.32 ### chr4 rmsk gene 15693941 15695719 . - . gene_id "HERVIP10FH_4p15.32"; transcript_id "HERVIP10FH_4p15.32"; locus "HERVIP10FH_4p15.32"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0048"; model_cov "1242"; model_pct "24.3"; chr4 rmsk exon 15693941 15694466 3634 - . gene_id "HERVIP10FH_4p15.32"; transcript_id "HERVIP10FH_4p15.32"; locus "HERVIP10FH_4p15.32"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10FH-int_0048"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 15694467 15695719 6340 - . gene_id "HERVIP10FH_4p15.32"; transcript_id "HERVIP10FH_4p15.32"; locus "HERVIP10FH_4p15.32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0048"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "3860"; repStart "0"; ### ERVLB4_4p15.32a ### chr4 rmsk gene 15745548 15746801 . - . gene_id "ERVLB4_4p15.32a"; transcript_id "ERVLB4_4p15.32a"; locus "ERVLB4_4p15.32a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0411"; model_cov "936"; model_pct "16.4"; chr4 rmsk exon 15745548 15746333 1724 - . gene_id "ERVLB4_4p15.32a"; transcript_id "ERVLB4_4p15.32a"; locus "ERVLB4_4p15.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0411"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "2282"; repStart "-2616"; chr4 rmsk exon 15746693 15746801 1724 - . gene_id "ERVLB4_4p15.32a"; transcript_id "ERVLB4_4p15.32a"; locus "ERVLB4_4p15.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0411"; repClass "LTR"; repEnd "2281"; repFamily "ERVL"; repLeft "2161"; repStart "-3433"; ### ERVLB4_4p15.32b ### chr4 rmsk gene 15746851 15748716 . - . gene_id "ERVLB4_4p15.32b"; transcript_id "ERVLB4_4p15.32b"; locus "ERVLB4_4p15.32b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0412"; model_cov "1549"; model_pct "27.1"; chr4 rmsk exon 15746851 15747670 1111 - . gene_id "ERVLB4_4p15.32b"; transcript_id "ERVLB4_4p15.32b"; locus "ERVLB4_4p15.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0412"; repClass "LTR"; repEnd "2396"; repFamily "ERVL"; repLeft "1589"; repStart "-3318"; chr4 rmsk exon 15747977 15748716 1111 - . gene_id "ERVLB4_4p15.32b"; transcript_id "ERVLB4_4p15.32b"; locus "ERVLB4_4p15.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0412"; repClass "LTR"; repEnd "1825"; repFamily "ERVL"; repLeft "1083"; repStart "-3889"; ### HERVL74_4p15.32 ### chr4 rmsk gene 15946074 15947104 . - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0019"; model_cov "575"; model_pct "10.1"; chr4 rmsk exon 15946074 15946167 542 - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0019"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3980"; repStart "-1612"; chr4 rmsk exon 15946595 15946630 256 - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0019"; repClass "LTR"; repEnd "3975"; repFamily "ERVL"; repLeft "3940"; repStart "-1710"; chr4 rmsk exon 15946679 15946789 515 - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0019"; repClass "LTR"; repEnd "3599"; repFamily "ERVL"; repLeft "3488"; repStart "-2086"; chr4 rmsk exon 15946781 15946912 667 - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0019"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "3208"; repStart "-2345"; chr4 rmsk exon 15946910 15947104 809 - . gene_id "HERVL74_4p15.32"; transcript_id "HERVL74_4p15.32"; locus "HERVL74_4p15.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0019"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "2473"; repStart "-3008"; ### ERV316A3_4p15.32a ### chr4 rmsk gene 16356432 16357313 . - . gene_id "ERV316A3_4p15.32a"; transcript_id "ERV316A3_4p15.32a"; locus "ERV316A3_4p15.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0639"; model_cov "657"; model_pct "12.6"; chr4 rmsk exon 16356432 16356706 1021 - . gene_id "ERV316A3_4p15.32a"; transcript_id "ERV316A3_4p15.32a"; locus "ERV316A3_4p15.32a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0639"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "168"; repStart "-4"; chr4 rmsk exon 16356820 16357062 251 - . gene_id "ERV316A3_4p15.32a"; transcript_id "ERV316A3_4p15.32a"; locus "ERV316A3_4p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0639"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "4553"; repStart "-413"; chr4 rmsk exon 16357063 16357313 484 - . gene_id "ERV316A3_4p15.32a"; transcript_id "ERV316A3_4p15.32a"; locus "ERV316A3_4p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0639"; repClass "LTR"; repEnd "4267"; repFamily "ERVL"; repLeft "3870"; repStart "-959"; ### HERVFRD_4p15.32 ### chr4 rmsk gene 16378090 16380527 . - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0053"; model_cov "1839"; model_pct "25.5"; chr4 rmsk exon 16378090 16378147 376 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0053"; repClass "LTR"; repEnd "3397"; repFamily "ERV1"; repLeft "3340"; repStart "-3808"; chr4 rmsk exon 16378148 16378261 582 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0053"; repClass "LTR"; repEnd "2901"; repFamily "ERV1"; repLeft "2789"; repStart "-4304"; chr4 rmsk exon 16378259 16378881 3158 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0053"; repClass "LTR"; repEnd "1848"; repFamily "ERV1"; repLeft "1218"; repStart "-5357"; chr4 rmsk exon 16378979 16379978 6159 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0053"; repClass "LTR"; repEnd "1047"; repFamily "ERV1"; repLeft "7"; repStart "-6158"; chr4 rmsk exon 16379979 16380132 867 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0053"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "563"; repStart "-12"; chr4 rmsk exon 16380138 16380527 2189 - . gene_id "HERVFRD_4p15.32"; transcript_id "HERVFRD_4p15.32"; locus "HERVFRD_4p15.32"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0053"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "1"; repStart "-332"; ### ERVLB4_4p15.32c ### chr4 rmsk gene 16911175 16915656 . + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0413"; model_cov "3856"; model_pct "67.5"; chr4 rmsk exon 16911175 16911318 841 + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0413"; repClass "LTR"; repEnd "142"; repFamily "ERVL"; repLeft "-414"; repStart "2"; chr4 rmsk exon 16911319 16911799 5415 + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0413"; repClass "LTR"; repEnd "1221"; repFamily "ERVL"; repLeft "-4493"; repStart "736"; chr4 rmsk exon 16912129 16912647 5415 + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0413"; repClass "LTR"; repEnd "1741"; repFamily "ERVL"; repLeft "-3973"; repStart "1222"; chr4 rmsk exon 16912652 16915463 17280 + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0413"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "2862"; chr4 rmsk exon 16915464 16915656 1041 + . gene_id "ERVLB4_4p15.32c"; transcript_id "ERVLB4_4p15.32c"; locus "ERVLB4_4p15.32c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0413"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "-322"; repStart "1"; ### HERVH_4p15.32 ### chr4 rmsk gene 16997747 17003925 . + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0358"; model_cov "5719"; model_pct "74.1"; chr4 rmsk exon 16997747 16998198 3394 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 16998201 16999998 8562 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "1928"; repFamily "ERV1"; repLeft "-5785"; repStart "1"; chr4 rmsk exon 17000001 17001081 7594 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1931"; chr4 rmsk exon 17001061 17001210 992 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 17001201 17002684 7480 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "6311"; repFamily "ERV1"; repLeft "-1402"; repStart "4537"; chr4 rmsk exon 17002685 17002879 1016 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4955"; chr4 rmsk exon 17002881 17003096 1429 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 17003095 17003474 2526 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 17003475 17003925 3529 + . gene_id "HERVH_4p15.32"; transcript_id "HERVH_4p15.32"; locus "HERVH_4p15.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0358"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4p15.32b ### chr4 rmsk gene 17628616 17629628 . + . gene_id "ERV316A3_4p15.32b"; transcript_id "ERV316A3_4p15.32b"; locus "ERV316A3_4p15.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0640"; model_cov "633"; model_pct "12.1"; chr4 rmsk exon 17628616 17628685 524 + . gene_id "ERV316A3_4p15.32b"; transcript_id "ERV316A3_4p15.32b"; locus "ERV316A3_4p15.32b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0640"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "412"; chr4 rmsk exon 17628686 17628934 378 + . gene_id "ERV316A3_4p15.32b"; transcript_id "ERV316A3_4p15.32b"; locus "ERV316A3_4p15.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0640"; repClass "LTR"; repEnd "248"; repFamily "ERVL"; repLeft "-4978"; repStart "6"; chr4 rmsk exon 17629245 17629628 1053 + . gene_id "ERV316A3_4p15.32b"; transcript_id "ERV316A3_4p15.32b"; locus "ERV316A3_4p15.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0640"; repClass "LTR"; repEnd "2521"; repFamily "ERVL"; repLeft "-2705"; repStart "2130"; ### HERVL_4p15.31a ### chr4 rmsk gene 17921652 17926749 . + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0340"; model_cov "3311"; model_pct "58.6"; chr4 rmsk exon 17921652 17922182 2327 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 17922183 17923363 8175 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "1105"; repFamily "ERVL"; repLeft "-4549"; repStart "-102"; chr4 rmsk exon 17923640 17923862 6258 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "-4356"; repStart "1106"; chr4 rmsk exon 17923951 17925589 13877 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "5383"; repFamily "ERVL"; repLeft "-271"; repStart "3741"; chr4 rmsk exon 17925909 17926170 13877 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5384"; chr4 rmsk exon 17926171 17926749 2062 + . gene_id "HERVL_4p15.31a"; transcript_id "HERVL_4p15.31a"; locus "HERVL_4p15.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0340"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVL_4p15.31b ### chr4 rmsk gene 18107107 18109100 . - . gene_id "HERVL_4p15.31b"; transcript_id "HERVL_4p15.31b"; locus "HERVL_4p15.31b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0342"; model_cov "1471"; model_pct "26.0"; chr4 rmsk exon 18107107 18107628 2017 - . gene_id "HERVL_4p15.31b"; transcript_id "HERVL_4p15.31b"; locus "HERVL_4p15.31b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0342"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-100"; repStart "-23"; chr4 rmsk exon 18107629 18109100 11286 - . gene_id "HERVL_4p15.31b"; transcript_id "HERVL_4p15.31b"; locus "HERVL_4p15.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0342"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4183"; repStart "0"; ### ERV316A3_4p15.31a ### chr4 rmsk gene 18590134 18591893 . + . gene_id "ERV316A3_4p15.31a"; transcript_id "ERV316A3_4p15.31a"; locus "ERV316A3_4p15.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0641"; model_cov "989"; model_pct "18.9"; chr4 rmsk exon 18590134 18590324 299 + . gene_id "ERV316A3_4p15.31a"; transcript_id "ERV316A3_4p15.31a"; locus "ERV316A3_4p15.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0641"; repClass "LTR"; repEnd "1156"; repFamily "ERVL"; repLeft "-4070"; repStart "961"; chr4 rmsk exon 18591028 18591615 587 + . gene_id "ERV316A3_4p15.31a"; transcript_id "ERV316A3_4p15.31a"; locus "ERV316A3_4p15.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0641"; repClass "LTR"; repEnd "2243"; repFamily "ERVL"; repLeft "-2983"; repStart "1626"; chr4 rmsk exon 18591717 18591893 359 + . gene_id "ERV316A3_4p15.31a"; transcript_id "ERV316A3_4p15.31a"; locus "ERV316A3_4p15.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0641"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-1932"; repStart "3117"; ### ERV316A3_4p15.31b ### chr4 rmsk gene 18709273 18710437 . + . gene_id "ERV316A3_4p15.31b"; transcript_id "ERV316A3_4p15.31b"; locus "ERV316A3_4p15.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0642"; model_cov "1144"; model_pct "21.9"; chr4 rmsk exon 18709273 18710437 4023 + . gene_id "ERV316A3_4p15.31b"; transcript_id "ERV316A3_4p15.31b"; locus "ERV316A3_4p15.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0642"; repClass "LTR"; repEnd "5056"; repFamily "ERVL"; repLeft "-170"; repStart "3912"; ### ERVLB4_4p15.31a ### chr4 rmsk gene 18736693 18740074 . - . gene_id "ERVLB4_4p15.31a"; transcript_id "ERVLB4_4p15.31a"; locus "ERVLB4_4p15.31a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0414"; model_cov "1187"; model_pct "20.8"; chr4 rmsk exon 18736693 18737085 1387 - . gene_id "ERVLB4_4p15.31a"; transcript_id "ERVLB4_4p15.31a"; locus "ERVLB4_4p15.31a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0414"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "143"; repStart "-48"; chr4 rmsk exon 18737192 18738150 5062 - . gene_id "ERVLB4_4p15.31a"; transcript_id "ERVLB4_4p15.31a"; locus "ERVLB4_4p15.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0414"; repClass "LTR"; repEnd "5670"; repFamily "ERVL"; repLeft "4659"; repStart "-44"; chr4 rmsk exon 18739073 18739249 1015 - . gene_id "ERVLB4_4p15.31a"; transcript_id "ERVLB4_4p15.31a"; locus "ERVLB4_4p15.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0414"; repClass "LTR"; repEnd "179"; repFamily "ERVL"; repLeft "3"; repStart "-5535"; chr4 rmsk exon 18739664 18740074 1444 - . gene_id "ERVLB4_4p15.31a"; transcript_id "ERVLB4_4p15.31a"; locus "ERVLB4_4p15.31a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0414"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "-67"; ### HERVL_4p15.31c ### chr4 rmsk gene 18782820 18784419 . + . gene_id "HERVL_4p15.31c"; transcript_id "HERVL_4p15.31c"; locus "HERVL_4p15.31c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0344"; model_cov "1160"; model_pct "20.5"; chr4 rmsk exon 18782820 18783985 8487 + . gene_id "HERVL_4p15.31c"; transcript_id "HERVL_4p15.31c"; locus "HERVL_4p15.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0344"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "4493"; chr4 rmsk exon 18783987 18784419 3019 + . gene_id "HERVL_4p15.31c"; transcript_id "HERVL_4p15.31c"; locus "HERVL_4p15.31c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0344"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_4p15.31 ### chr4 rmsk gene 18871801 18877133 . - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0115"; model_cov "4567"; model_pct "76.8"; chr4 rmsk exon 18871801 18872353 4116 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0115"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 18872354 18874209 11952 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0115"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "3251"; repStart "-3"; chr4 rmsk exon 18874513 18875771 10139 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0115"; repClass "LTR"; repEnd "1879"; repFamily "ERV1"; repLeft "736"; repStart "-4067"; chr4 rmsk exon 18875750 18876402 3886 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0115"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "2"; repStart "-5313"; chr4 rmsk exon 18876499 18876576 287 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0115"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr4 rmsk exon 18876577 18877133 4198 - . gene_id "MER41_4p15.31"; transcript_id "MER41_4p15.31"; locus "MER41_4p15.31"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0115"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_4p15.31d ### chr4 rmsk gene 19088180 19089954 . + . gene_id "HERVL_4p15.31d"; transcript_id "HERVL_4p15.31d"; locus "HERVL_4p15.31d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0345"; model_cov "1212"; model_pct "21.4"; chr4 rmsk exon 19088180 19089390 8473 + . gene_id "HERVL_4p15.31d"; transcript_id "HERVL_4p15.31d"; locus "HERVL_4p15.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0345"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4442"; chr4 rmsk exon 19089391 19089954 1930 + . gene_id "HERVL_4p15.31d"; transcript_id "HERVL_4p15.31d"; locus "HERVL_4p15.31d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0345"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH48_4p15.31 ### chr4 rmsk gene 19887173 19894363 . + . gene_id "HERVH48_4p15.31"; transcript_id "HERVH48_4p15.31"; locus "HERVH48_4p15.31"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0014"; model_cov "6651"; model_pct "100.0"; chr4 rmsk exon 19887173 19887554 2613 + . gene_id "HERVH48_4p15.31"; transcript_id "HERVH48_4p15.31"; locus "HERVH48_4p15.31"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0014"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 19887557 19893979 21806 + . gene_id "HERVH48_4p15.31"; transcript_id "HERVH48_4p15.31"; locus "HERVH48_4p15.31"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0014"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr4 rmsk exon 19893980 19894363 2731 + . gene_id "HERVH48_4p15.31"; transcript_id "HERVH48_4p15.31"; locus "HERVH48_4p15.31"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0014"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4p15.31a ### chr4 rmsk gene 20137321 20140028 . + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0922"; model_cov "2187"; model_pct "38.6"; chr4 rmsk exon 20137321 20137440 275 + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0922"; repClass "LTR"; repEnd "234"; repFamily "ERVL"; repLeft "-5433"; repStart "115"; chr4 rmsk exon 20137521 20137771 397 + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0922"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "-5048"; repStart "361"; chr4 rmsk exon 20137990 20138768 1450 + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0922"; repClass "LTR"; repEnd "2023"; repFamily "ERVL"; repLeft "-3644"; repStart "1207"; chr4 rmsk exon 20138797 20139104 664 + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0922"; repClass "LTR"; repEnd "2449"; repFamily "ERVL"; repLeft "-3218"; repStart "2137"; chr4 rmsk exon 20139362 20140028 1258 + . gene_id "ERVLE_4p15.31a"; transcript_id "ERVLE_4p15.31a"; locus "ERVLE_4p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0922"; repClass "LTR"; repEnd "3257"; repFamily "ERVL"; repLeft "-2410"; repStart "2575"; ### ERVLE_4p15.31b ### chr4 rmsk gene 20150755 20151634 . + . gene_id "ERVLE_4p15.31b"; transcript_id "ERVLE_4p15.31b"; locus "ERVLE_4p15.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0923"; model_cov "571"; model_pct "10.1"; chr4 rmsk exon 20150755 20150924 389 + . gene_id "ERVLE_4p15.31b"; transcript_id "ERVLE_4p15.31b"; locus "ERVLE_4p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0923"; repClass "LTR"; repEnd "3644"; repFamily "ERVL"; repLeft "-2023"; repStart "3481"; chr4 rmsk exon 20151160 20151296 299 + . gene_id "ERVLE_4p15.31b"; transcript_id "ERVLE_4p15.31b"; locus "ERVLE_4p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0923"; repClass "LTR"; repEnd "4095"; repFamily "ERVL"; repLeft "-1572"; repStart "3957"; chr4 rmsk exon 20151373 20151634 620 + . gene_id "ERVLE_4p15.31b"; transcript_id "ERVLE_4p15.31b"; locus "ERVLE_4p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0923"; repClass "LTR"; repEnd "4527"; repFamily "ERVL"; repLeft "-1140"; repStart "4257"; ### ERVLB4_4p15.31b ### chr4 rmsk gene 20159602 20163937 . + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0415"; model_cov "3641"; model_pct "63.7"; chr4 rmsk exon 20159602 20160006 1604 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "48"; chr4 rmsk exon 20160008 20160312 1379 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "321"; repFamily "ERVL"; repLeft "-5393"; repStart "2"; chr4 rmsk exon 20160311 20160897 3597 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "1694"; repFamily "ERVL"; repLeft "-4020"; repStart "1106"; chr4 rmsk exon 20160902 20162215 7542 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "4200"; repFamily "ERVL"; repLeft "-1514"; repStart "2876"; chr4 rmsk exon 20162217 20163638 7498 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4304"; chr4 rmsk exon 20163639 20163937 1204 + . gene_id "ERVLB4_4p15.31b"; transcript_id "ERVLB4_4p15.31b"; locus "ERVLB4_4p15.31b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0415"; repClass "LTR"; repEnd "303"; repFamily "ERVL"; repLeft "-217"; repStart "1"; ### HERVH_4p15.31a ### chr4 rmsk gene 20195710 20199271 . + . gene_id "HERVH_4p15.31a"; transcript_id "HERVH_4p15.31a"; locus "HERVH_4p15.31a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0360"; model_cov "3053"; model_pct "39.6"; chr4 rmsk exon 20195710 20198782 16599 + . gene_id "HERVH_4p15.31a"; transcript_id "HERVH_4p15.31a"; locus "HERVH_4p15.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0360"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4660"; chr4 rmsk exon 20198862 20199271 1627 + . gene_id "HERVH_4p15.31a"; transcript_id "HERVH_4p15.31a"; locus "HERVH_4p15.31a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0360"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "142"; ### MER4_4p15.31a ### chr4 rmsk gene 20626733 20629769 . - . gene_id "MER4_4p15.31a"; transcript_id "MER4_4p15.31a"; locus "MER4_4p15.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0195"; model_cov "2511"; model_pct "38.1"; chr4 rmsk exon 20626733 20627172 3131 - . gene_id "MER4_4p15.31a"; transcript_id "MER4_4p15.31a"; locus "MER4_4p15.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0195"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 20627185 20628307 7283 - . gene_id "MER4_4p15.31a"; transcript_id "MER4_4p15.31a"; locus "MER4_4p15.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0195"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "5432"; repStart "-5"; chr4 rmsk exon 20628427 20629123 4598 - . gene_id "MER4_4p15.31a"; transcript_id "MER4_4p15.31a"; locus "MER4_4p15.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0195"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1764"; repStart "-4103"; chr4 rmsk exon 20629204 20629769 3373 - . gene_id "MER4_4p15.31a"; transcript_id "MER4_4p15.31a"; locus "MER4_4p15.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0195"; repClass "LTR"; repEnd "990"; repFamily "ERV1"; repLeft "371"; repStart "-5608"; ### HERVH_4p15.31b ### chr4 rmsk gene 20629771 20635978 . - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0361"; model_cov "5403"; model_pct "70.1"; chr4 rmsk exon 20629771 20630179 3007 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 20630180 20630557 2467 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 20630556 20630767 1386 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 20630769 20632490 8289 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr4 rmsk exon 20632481 20632628 824 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 20632623 20635566 20207 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 20635569 20635978 3103 - . gene_id "HERVH_4p15.31b"; transcript_id "HERVH_4p15.31b"; locus "HERVH_4p15.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0361"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_4p15.31b ### chr4 rmsk gene 20636324 20638030 . - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0196"; model_cov "1007"; model_pct "15.3"; chr4 rmsk exon 20636324 20636566 976 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0196"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2215"; repStart "-4107"; chr4 rmsk exon 20636855 20636964 976 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0196"; repClass "LTR"; repEnd "2214"; repFamily "ERV1"; repLeft "2115"; repStart "-4384"; chr4 rmsk exon 20636994 20637116 340 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0196"; repClass "LTR"; repEnd "-659"; repFamily "ERV1"; repLeft "-728"; repStart "-7257"; chr4 rmsk exon 20637098 20637165 253 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0196"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "620"; repStart "-5912"; chr4 rmsk exon 20637141 20637616 2548 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0196"; repClass "LTR"; repEnd "-1172"; repFamily "ERV1"; repLeft "-1669"; repStart "-7770"; chr4 rmsk exon 20637622 20638030 2899 - . gene_id "MER4_4p15.31b"; transcript_id "MER4_4p15.31b"; locus "MER4_4p15.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0196"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_4p15.31c ### chr4 rmsk gene 20685971 20687717 . - . gene_id "ERVLB4_4p15.31c"; transcript_id "ERVLB4_4p15.31c"; locus "ERVLB4_4p15.31c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0416"; model_cov "1244"; model_pct "21.8"; chr4 rmsk exon 20685971 20685993 1470 - . gene_id "ERVLB4_4p15.31c"; transcript_id "ERVLB4_4p15.31c"; locus "ERVLB4_4p15.31c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0416"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "378"; repStart "-14"; chr4 rmsk exon 20686039 20686382 1470 - . gene_id "ERVLB4_4p15.31c"; transcript_id "ERVLB4_4p15.31c"; locus "ERVLB4_4p15.31c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0416"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "1"; repStart "-37"; chr4 rmsk exon 20686483 20687717 6440 - . gene_id "ERVLB4_4p15.31c"; transcript_id "ERVLB4_4p15.31c"; locus "ERVLB4_4p15.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0416"; repClass "LTR"; repEnd "3202"; repFamily "ERVL"; repLeft "1958"; repStart "-2512"; ### ERVLB4_4p15.2b ### chr4 rmsk gene 21639764 21643956 . + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; category "opposite*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0418"; model_cov "2891"; model_pct "50.6"; chr4 rmsk exon 21639764 21640036 1408 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0418"; prev_strand "-"; repClass "LTR"; repEnd "2170"; repFamily "ERVL"; repLeft "1863"; repStart "-3544"; chr4 rmsk exon 21640036 21640588 3330 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0418"; prev_strand "-"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1147"; repStart "-4005"; chr4 rmsk exon 21640617 21640680 3330 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0418"; prev_strand "-"; repClass "LTR"; repEnd "1146"; repFamily "ERVL"; repLeft "1068"; repStart "-4568"; chr4 rmsk exon 21640680 21642315 9370 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0418"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-1058"; repStart "2958"; chr4 rmsk exon 21642315 21643486 6211 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0418"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4521"; chr4 rmsk exon 21643489 21643840 1786 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0418"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-42"; repStart "-142"; chr4 rmsk exon 21643943 21643956 555 + . gene_id "ERVLB4_4p15.2b"; transcript_id "ERVLB4_4p15.2b"; locus "ERVLB4_4p15.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0418"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-28"; repStart "373"; ### ERVLE_4p15.2a ### chr4 rmsk gene 22041432 22042700 . - . gene_id "ERVLE_4p15.2a"; transcript_id "ERVLE_4p15.2a"; locus "ERVLE_4p15.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0924"; model_cov "1353"; model_pct "23.9"; chr4 rmsk exon 22041432 22042506 1641 - . gene_id "ERVLE_4p15.2a"; transcript_id "ERVLE_4p15.2a"; locus "ERVLE_4p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0924"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "4046"; repStart "-450"; chr4 rmsk exon 22042518 22042700 502 - . gene_id "ERVLE_4p15.2a"; transcript_id "ERVLE_4p15.2a"; locus "ERVLE_4p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0924"; repClass "LTR"; repEnd "3872"; repFamily "ERVL"; repLeft "3690"; repStart "-1795"; ### ERVLE_4p15.2b ### chr4 rmsk gene 22135254 22140062 . + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0925"; model_cov "2911"; model_pct "51.4"; chr4 rmsk exon 22135254 22135876 628 + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0925"; repClass "LTR"; repEnd "653"; repFamily "ERVL"; repLeft "-5014"; repStart "27"; chr4 rmsk exon 22136112 22136633 868 + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0925"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "-4137"; repStart "965"; chr4 rmsk exon 22138042 22138220 513 + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0925"; repClass "LTR"; repEnd "2995"; repFamily "ERVL"; repLeft "-2672"; repStart "2808"; chr4 rmsk exon 22138246 22139406 2110 + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0925"; repClass "LTR"; repEnd "4250"; repFamily "ERVL"; repLeft "-1417"; repStart "3048"; chr4 rmsk exon 22139743 22140062 641 + . gene_id "ERVLE_4p15.2b"; transcript_id "ERVLE_4p15.2b"; locus "ERVLE_4p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0925"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "-393"; repStart "4943"; ### HERVL66_4p15.2 ### chr4 rmsk gene 22334844 22339971 . - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0011"; model_cov "2959"; model_pct "68.4"; chr4 rmsk exon 22334844 22335433 4614 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 22335434 22335670 914 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3988"; repStart "0"; chr4 rmsk exon 22336851 22337278 2634 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "4000"; repFamily "ERVL"; repLeft "3569"; repStart "-329"; chr4 rmsk exon 22337277 22337958 4535 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "2655"; repStart "-977"; chr4 rmsk exon 22337940 22338287 2451 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1436"; repStart "-2532"; chr4 rmsk exon 22338288 22339382 7709 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "1"; repStart "-3199"; chr4 rmsk exon 22339383 22339971 4439 - . gene_id "HERVL66_4p15.2"; transcript_id "HERVL66_4p15.2"; locus "HERVL66_4p15.2"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0011"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_4p15.2a ### chr4 rmsk gene 22340526 22342142 . + . gene_id "HERVL_4p15.2a"; transcript_id "HERVL_4p15.2a"; locus "HERVL_4p15.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0346"; model_cov "1574"; model_pct "27.8"; chr4 rmsk exon 22340526 22340582 254 + . gene_id "HERVL_4p15.2a"; transcript_id "HERVL_4p15.2a"; locus "HERVL_4p15.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "HERVL-int_0346"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-3"; repStart "500"; chr4 rmsk exon 22340590 22342142 10343 + . gene_id "HERVL_4p15.2a"; transcript_id "HERVL_4p15.2a"; locus "HERVL_4p15.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0346"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-4079"; repStart "1"; ### MER41_4p15.2 ### chr4 rmsk gene 22373540 22382732 . + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0116"; model_cov "6313"; model_pct "100.0"; chr4 rmsk exon 22373540 22374089 4116 + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0116"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 22374179 22375401 9226 + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0116"; repClass "LTR"; repEnd "1363"; repFamily "ERV1"; repLeft "-4583"; repStart "3"; chr4 rmsk exon 22375713 22377314 9226 + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0116"; repClass "LTR"; repEnd "3048"; repFamily "ERV1"; repLeft "-2898"; repStart "1364"; chr4 rmsk exon 22379770 22382186 11815 + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0116"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2675"; chr4 rmsk exon 22382187 22382732 4132 + . gene_id "MER41_4p15.2"; transcript_id "MER41_4p15.2"; locus "MER41_4p15.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0116"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_4p15.2 ### chr4 rmsk gene 22599246 22605466 . + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0052"; model_cov "5791"; model_pct "84.0"; chr4 rmsk exon 22599246 22599724 4026 + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0052"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr4 rmsk exon 22599727 22600102 2374 + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0052"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "3"; chr4 rmsk exon 22600098 22600740 4561 + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0052"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "-6004"; repStart "262"; chr4 rmsk exon 22600727 22604984 22940 + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0052"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2112"; chr4 rmsk exon 22604985 22605466 4110 + . gene_id "HARLEQUIN_4p15.2"; transcript_id "HARLEQUIN_4p15.2"; locus "HARLEQUIN_4p15.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0052"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL40_4p15.2 ### chr4 rmsk gene 22990637 22994078 . - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0089"; model_cov "3471"; model_pct "62.8"; chr4 rmsk exon 22990637 22991930 2316 - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0089"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "3228"; repStart "-866"; chr4 rmsk exon 22991960 22992590 2285 - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0089"; repClass "LTR"; repEnd "3172"; repFamily "ERVL"; repLeft "2522"; repStart "-2358"; chr4 rmsk exon 22992590 22993669 2796 - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0089"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "566"; repStart "-3919"; chr4 rmsk exon 22993710 22993871 431 - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0089"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "411"; repStart "-4960"; chr4 rmsk exon 22993891 22994078 420 - . gene_id "HERVL40_4p15.2"; transcript_id "HERVL40_4p15.2"; locus "HERVL40_4p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0089"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "240"; repStart "-5109"; ### HERVL_4p15.2b ### chr4 rmsk gene 23463593 23470134 . - . gene_id "HERVL_4p15.2b"; transcript_id "HERVL_4p15.2b"; locus "HERVL_4p15.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0347"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 23463593 23463623 3024 - . gene_id "HERVL_4p15.2b"; transcript_id "HERVL_4p15.2b"; locus "HERVL_4p15.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0347"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "392"; repStart "0"; chr4 rmsk exon 23463658 23464047 3024 - . gene_id "HERVL_4p15.2b"; transcript_id "HERVL_4p15.2b"; locus "HERVL_4p15.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0347"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "2"; repStart "-53"; chr4 rmsk exon 23464048 23469688 42945 - . gene_id "HERVL_4p15.2b"; transcript_id "HERVL_4p15.2b"; locus "HERVL_4p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0347"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 23469689 23470134 3341 - . gene_id "HERVL_4p15.2b"; transcript_id "HERVL_4p15.2b"; locus "HERVL_4p15.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0347"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER101_4p15.2 ### chr4 rmsk gene 23504782 23507140 . - . gene_id "MER101_4p15.2"; transcript_id "MER101_4p15.2"; locus "MER101_4p15.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0112"; model_cov "1033"; model_pct "15.6"; chr4 rmsk exon 23504782 23505561 1216 - . gene_id "MER101_4p15.2"; transcript_id "MER101_4p15.2"; locus "MER101_4p15.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0112"; repClass "LTR"; repEnd "3160"; repFamily "ERV1"; repLeft "2157"; repStart "-3479"; chr4 rmsk exon 23507127 23507140 731 - . gene_id "MER101_4p15.2"; transcript_id "MER101_4p15.2"; locus "MER101_4p15.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0112"; repClass "LTR"; repEnd "1663"; repFamily "ERV1"; repLeft "1633"; repStart "-4976"; ### MER61_4p15.2 ### chr4 rmsk gene 23573168 23575586 . - . gene_id "MER61_4p15.2"; transcript_id "MER61_4p15.2"; locus "MER61_4p15.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0107"; model_cov "2882"; model_pct "55.2"; chr4 rmsk exon 23573168 23575234 11038 - . gene_id "MER61_4p15.2"; transcript_id "MER61_4p15.2"; locus "MER61_4p15.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0107"; repClass "LTR"; repEnd "2736"; repFamily "ERV1"; repLeft "-89"; repStart "-2481"; chr4 rmsk exon 23575526 23575586 2935 - . gene_id "MER61_4p15.2"; transcript_id "MER61_4p15.2"; locus "MER61_4p15.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0107"; repClass "LTR"; repEnd "2255"; repFamily "ERV1"; repLeft "2198"; repStart "-2962"; ### ERV316A3_4p15.2a ### chr4 rmsk gene 23679909 23682160 . - . gene_id "ERV316A3_4p15.2a"; transcript_id "ERV316A3_4p15.2a"; locus "ERV316A3_4p15.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0645"; model_cov "1477"; model_pct "28.3"; chr4 rmsk exon 23679909 23680013 280 - . gene_id "ERV316A3_4p15.2a"; transcript_id "ERV316A3_4p15.2a"; locus "ERV316A3_4p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0645"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "4948"; repStart "-176"; chr4 rmsk exon 23680479 23681748 3570 - . gene_id "ERV316A3_4p15.2a"; transcript_id "ERV316A3_4p15.2a"; locus "ERV316A3_4p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0645"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "1726"; repStart "-2213"; chr4 rmsk exon 23682075 23682160 3570 - . gene_id "ERV316A3_4p15.2a"; transcript_id "ERV316A3_4p15.2a"; locus "ERV316A3_4p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0645"; repClass "LTR"; repEnd "1725"; repFamily "ERVL"; repLeft "1637"; repStart "-3501"; ### ERV316A3_4p15.2b ### chr4 rmsk gene 23682202 23682846 . - . gene_id "ERV316A3_4p15.2b"; transcript_id "ERV316A3_4p15.2b"; locus "ERV316A3_4p15.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0646"; model_cov "669"; model_pct "12.8"; chr4 rmsk exon 23682202 23682846 3570 - . gene_id "ERV316A3_4p15.2b"; transcript_id "ERV316A3_4p15.2b"; locus "ERV316A3_4p15.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0646"; repClass "LTR"; repEnd "1725"; repFamily "ERVL"; repLeft "1056"; repStart "-3501"; ### HERVH_4p15.2a ### chr4 rmsk gene 23722873 23727866 . - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0362"; model_cov "4039"; model_pct "52.4"; chr4 rmsk exon 23722873 23723321 3598 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 23723322 23723490 1156 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7550"; repStart "0"; chr4 rmsk exon 23723483 23723711 1477 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "4719"; repFamily "ERV1"; repLeft "4488"; repStart "-2994"; chr4 rmsk exon 23723714 23724218 3254 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 23724209 23724358 938 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 23724338 23727417 16388 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 23727420 23727866 3588 - . gene_id "HERVH_4p15.2a"; transcript_id "HERVH_4p15.2a"; locus "HERVH_4p15.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0362"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### ERVLE_4p15.2c ### chr4 rmsk gene 23749572 23750669 . + . gene_id "ERVLE_4p15.2c"; transcript_id "ERVLE_4p15.2c"; locus "ERVLE_4p15.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0926"; model_cov "656"; model_pct "11.6"; chr4 rmsk exon 23749572 23749641 285 + . gene_id "ERVLE_4p15.2c"; transcript_id "ERVLE_4p15.2c"; locus "ERVLE_4p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0926"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3698"; chr4 rmsk exon 23749639 23749661 280 + . gene_id "ERVLE_4p15.2c"; transcript_id "ERVLE_4p15.2c"; locus "ERVLE_4p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0926"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "-1272"; repStart "4375"; chr4 rmsk exon 23750105 23750206 280 + . gene_id "ERVLE_4p15.2c"; transcript_id "ERVLE_4p15.2c"; locus "ERVLE_4p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0926"; repClass "LTR"; repEnd "4490"; repFamily "ERVL"; repLeft "-1177"; repStart "4396"; chr4 rmsk exon 23750221 23750669 409 + . gene_id "ERVLE_4p15.2c"; transcript_id "ERVLE_4p15.2c"; locus "ERVLE_4p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0926"; repClass "LTR"; repEnd "5255"; repFamily "ERVL"; repLeft "-412"; repStart "4782"; ### HERVL_4p15.2c ### chr4 rmsk gene 23760759 23763262 . + . gene_id "HERVL_4p15.2c"; transcript_id "HERVL_4p15.2c"; locus "HERVL_4p15.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0348"; model_cov "2015"; model_pct "35.6"; chr4 rmsk exon 23760759 23762717 11525 + . gene_id "HERVL_4p15.2c"; transcript_id "HERVL_4p15.2c"; locus "HERVL_4p15.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0348"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3639"; chr4 rmsk exon 23762718 23763262 1942 + . gene_id "HERVL_4p15.2c"; transcript_id "HERVL_4p15.2c"; locus "HERVL_4p15.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0348"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "-100"; ### HERVH_4p15.2b ### chr4 rmsk gene 24323284 24328210 . + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0363"; model_cov "4289"; model_pct "55.6"; chr4 rmsk exon 24323284 24323716 2784 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr4 rmsk exon 24323718 24326612 16202 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 24326607 24326751 819 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 24326751 24326889 957 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-4075"; repStart "3500"; chr4 rmsk exon 24326880 24327240 1224 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4744"; chr4 rmsk exon 24327242 24327445 1191 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 24327444 24327822 2617 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 24327823 24328210 2393 + . gene_id "HERVH_4p15.2b"; transcript_id "HERVH_4p15.2b"; locus "HERVH_4p15.2b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0363"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "23"; ### HERVH_4p15.2c ### chr4 rmsk gene 24500975 24506750 . + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0364"; model_cov "4911"; model_pct "63.7"; chr4 rmsk exon 24500975 24501425 3464 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 24501428 24504429 18490 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 24504409 24504555 822 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 24504546 24505044 3124 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 24505047 24505709 3872 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 24505711 24505923 1301 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "5816"; repFamily "ERV1"; repLeft "-1897"; repStart "5600"; chr4 rmsk exon 24505927 24506299 2411 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 24506300 24506750 3397 + . gene_id "HERVH_4p15.2c"; transcript_id "HERVH_4p15.2c"; locus "HERVH_4p15.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0364"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4p15.2c ### chr4 rmsk gene 24590714 24591552 . + . gene_id "ERV316A3_4p15.2c"; transcript_id "ERV316A3_4p15.2c"; locus "ERV316A3_4p15.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0647"; model_cov "722"; model_pct "13.8"; chr4 rmsk exon 24590714 24590858 531 + . gene_id "ERV316A3_4p15.2c"; transcript_id "ERV316A3_4p15.2c"; locus "ERV316A3_4p15.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0647"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "297"; chr4 rmsk exon 24590866 24591552 2061 + . gene_id "ERV316A3_4p15.2c"; transcript_id "ERV316A3_4p15.2c"; locus "ERV316A3_4p15.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0647"; repClass "LTR"; repEnd "954"; repFamily "ERVL"; repLeft "-4272"; repStart "232"; ### ERV316A3_4p15.2d ### chr4 rmsk gene 24592264 24593915 . + . gene_id "ERV316A3_4p15.2d"; transcript_id "ERV316A3_4p15.2d"; locus "ERV316A3_4p15.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0648"; model_cov "1283"; model_pct "24.6"; chr4 rmsk exon 24592264 24592331 2943 + . gene_id "ERV316A3_4p15.2d"; transcript_id "ERV316A3_4p15.2d"; locus "ERV316A3_4p15.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0648"; repClass "LTR"; repEnd "888"; repFamily "ERVL"; repLeft "-4338"; repStart "827"; chr4 rmsk exon 24592637 24593915 2943 + . gene_id "ERV316A3_4p15.2d"; transcript_id "ERV316A3_4p15.2d"; locus "ERV316A3_4p15.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0648"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "-3115"; repStart "889"; ### PABLB_4p15.2 ### chr4 rmsk gene 24599845 24604833 . + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; category "oneside"; intModel "PABL_B-int"; locid "PABL_B-int_0025"; model_cov "4227"; model_pct "59.4"; chr4 rmsk exon 24599845 24600143 1270 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "370"; chr4 rmsk exon 24600161 24600451 972 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "-6810"; repStart "28"; chr4 rmsk exon 24601007 24601758 1856 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "1369"; repFamily "ERV1"; repLeft "-5753"; repStart "490"; chr4 rmsk exon 24601757 24603128 7416 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "-3057"; repStart "2690"; chr4 rmsk exon 24603122 24603827 4305 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "5645"; repFamily "ERV1"; repLeft "-1477"; repStart "4926"; chr4 rmsk exon 24604184 24604404 4305 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "5879"; repFamily "ERV1"; repLeft "-1243"; repStart "5646"; chr4 rmsk exon 24604428 24604833 1775 + . gene_id "PABLB_4p15.2"; transcript_id "PABLB_4p15.2"; locus "PABLB_4p15.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0025"; repClass "LTR"; repEnd "7080"; repFamily "ERV1"; repLeft "-42"; repStart "6343"; ### ERV316A3_4p15.2e ### chr4 rmsk gene 24607148 24611453 . + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0649"; model_cov "2298"; model_pct "44.0"; chr4 rmsk exon 24607148 24607750 1972 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2483"; repStart "2151"; chr4 rmsk exon 24607821 24607900 916 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "2874"; repFamily "ERVL"; repLeft "-2352"; repStart "2810"; chr4 rmsk exon 24608211 24608701 916 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-1862"; repStart "2875"; chr4 rmsk exon 24608889 24609416 1355 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "3847"; repFamily "ERVL"; repLeft "-1379"; repStart "3331"; chr4 rmsk exon 24609470 24609576 343 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "4351"; repFamily "ERVL"; repLeft "-875"; repStart "4246"; chr4 rmsk exon 24610213 24610742 1577 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-21"; repStart "4673"; chr4 rmsk exon 24611157 24611453 1575 + . gene_id "ERV316A3_4p15.2e"; transcript_id "ERV316A3_4p15.2e"; locus "ERV316A3_4p15.2e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0649"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "-141"; repStart "1"; ### ERV316A3_4p15.2f ### chr4 rmsk gene 24956553 24958526 . + . gene_id "ERV316A3_4p15.2f"; transcript_id "ERV316A3_4p15.2f"; locus "ERV316A3_4p15.2f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0650"; model_cov "1812"; model_pct "34.7"; chr4 rmsk exon 24956553 24957612 3533 + . gene_id "ERV316A3_4p15.2f"; transcript_id "ERV316A3_4p15.2f"; locus "ERV316A3_4p15.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0650"; repClass "LTR"; repEnd "3655"; repFamily "ERVL"; repLeft "-1571"; repStart "2552"; chr4 rmsk exon 24957827 24958526 3533 + . gene_id "ERV316A3_4p15.2f"; transcript_id "ERV316A3_4p15.2f"; locus "ERV316A3_4p15.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0650"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "-861"; repStart "3656"; ### HERVL18_4p15.2a ### chr4 rmsk gene 24965778 24971675 . + . gene_id "HERVL18_4p15.2a"; transcript_id "HERVL18_4p15.2a"; locus "HERVL18_4p15.2a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0038"; model_cov "5256"; model_pct "86.9"; chr4 rmsk exon 24965778 24966107 2337 + . gene_id "HERVL18_4p15.2a"; transcript_id "HERVL18_4p15.2a"; locus "HERVL18_4p15.2a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0038"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr4 rmsk exon 24966132 24971357 33453 + . gene_id "HERVL18_4p15.2a"; transcript_id "HERVL18_4p15.2a"; locus "HERVL18_4p15.2a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0038"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "791"; chr4 rmsk exon 24971359 24971675 2120 + . gene_id "HERVL18_4p15.2a"; transcript_id "HERVL18_4p15.2a"; locus "HERVL18_4p15.2a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0038"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "-28"; repStart "1"; ### HERVL18_4p15.2b ### chr4 rmsk gene 25358630 25361736 . + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0039"; model_cov "2403"; model_pct "39.7"; chr4 rmsk exon 25358630 25358996 2378 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr4 rmsk exon 25359023 25359546 2643 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "-5513"; repStart "9"; chr4 rmsk exon 25359516 25359957 2018 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "1149"; chr4 rmsk exon 25359956 25359990 259 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1776"; chr4 rmsk exon 25359990 25360246 1157 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr4 rmsk exon 25360246 25360874 3983 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "3380"; repFamily "ERVL"; repLeft "-2667"; repStart "2720"; chr4 rmsk exon 25360912 25361092 3983 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "3572"; repFamily "ERVL"; repLeft "-2475"; repStart "3381"; chr4 rmsk exon 25361103 25361196 643 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr4 rmsk exon 25361256 25361354 514 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr4 rmsk exon 25361356 25361736 2203 + . gene_id "HERVL18_4p15.2b"; transcript_id "HERVL18_4p15.2b"; locus "HERVL18_4p15.2b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0039"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4p15.2d ### chr4 rmsk gene 26455516 26456067 . - . gene_id "ERVLE_4p15.2d"; transcript_id "ERVLE_4p15.2d"; locus "ERVLE_4p15.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0927"; model_cov "575"; model_pct "10.1"; chr4 rmsk exon 26455516 26456067 1126 - . gene_id "ERVLE_4p15.2d"; transcript_id "ERVLE_4p15.2d"; locus "ERVLE_4p15.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0927"; repClass "LTR"; repEnd "4799"; repFamily "ERVL"; repLeft "4224"; repStart "-868"; ### ERVLB4_4p15.2a ### chr4 rmsk gene 26887864 26893109 . - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0419"; model_cov "3418"; model_pct "59.8"; chr4 rmsk exon 26887864 26888183 1420 - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0419"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "13"; repStart "-52"; chr4 rmsk exon 26888191 26890551 13044 - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0419"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3277"; repStart "0"; chr4 rmsk exon 26890844 26891088 13044 - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0419"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "3042"; repStart "-2438"; chr4 rmsk exon 26891648 26891842 1201 - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0419"; repClass "LTR"; repEnd "3033"; repFamily "ERVL"; repLeft "2837"; repStart "-2681"; chr4 rmsk exon 26892560 26893109 3149 - . gene_id "ERVLB4_4p15.2a"; transcript_id "ERVLB4_4p15.2a"; locus "ERVLB4_4p15.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0419"; repClass "LTR"; repEnd "2837"; repFamily "ERVL"; repLeft "2286"; repStart "-2877"; ### ERV316A3_4p15.2g ### chr4 rmsk gene 27471214 27474964 . + . gene_id "ERV316A3_4p15.2g"; transcript_id "ERV316A3_4p15.2g"; locus "ERV316A3_4p15.2g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0651"; model_cov "3728"; model_pct "71.3"; chr4 rmsk exon 27471214 27472075 7566 + . gene_id "ERV316A3_4p15.2g"; transcript_id "ERV316A3_4p15.2g"; locus "ERV316A3_4p15.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0651"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "-3085"; repStart "1346"; chr4 rmsk exon 27472128 27472769 7566 + . gene_id "ERV316A3_4p15.2g"; transcript_id "ERV316A3_4p15.2g"; locus "ERV316A3_4p15.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0651"; repClass "LTR"; repEnd "2830"; repFamily "ERVL"; repLeft "-2396"; repStart "2142"; chr4 rmsk exon 27472877 27474964 7566 + . gene_id "ERV316A3_4p15.2g"; transcript_id "ERV316A3_4p15.2g"; locus "ERV316A3_4p15.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0651"; repClass "LTR"; repEnd "5076"; repFamily "ERVL"; repLeft "-150"; repStart "2831"; ### ERV316A3_4p15.2h ### chr4 rmsk gene 27528392 27531682 . - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0652"; model_cov "2453"; model_pct "46.9"; chr4 rmsk exon 27528392 27528637 775 - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0652"; repClass "LTR"; repEnd "3738"; repFamily "ERVL"; repLeft "3480"; repStart "-1488"; chr4 rmsk exon 27528648 27528806 338 - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0652"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "3188"; repStart "-1874"; chr4 rmsk exon 27529188 27530903 2596 - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0652"; repClass "LTR"; repEnd "2881"; repFamily "ERVL"; repLeft "1045"; repStart "-2345"; chr4 rmsk exon 27530928 27531098 496 - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0652"; repClass "LTR"; repEnd "747"; repFamily "ERVL"; repLeft "552"; repStart "-4479"; chr4 rmsk exon 27531369 27531682 669 - . gene_id "ERV316A3_4p15.2h"; transcript_id "ERV316A3_4p15.2h"; locus "ERV316A3_4p15.2h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0652"; repClass "LTR"; repEnd "417"; repFamily "ERVL"; repLeft "45"; repStart "-21"; ### ERV316A3_4p15.1a ### chr4 rmsk gene 27800204 27801465 . + . gene_id "ERV316A3_4p15.1a"; transcript_id "ERV316A3_4p15.1a"; locus "ERV316A3_4p15.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0653"; model_cov "559"; model_pct "10.7"; chr4 rmsk exon 27800204 27800378 515 + . gene_id "ERV316A3_4p15.1a"; transcript_id "ERV316A3_4p15.1a"; locus "ERV316A3_4p15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0653"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "-746"; repStart "4300"; chr4 rmsk exon 27800689 27801057 1123 + . gene_id "ERV316A3_4p15.1a"; transcript_id "ERV316A3_4p15.1a"; locus "ERV316A3_4p15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0653"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4846"; chr4 rmsk exon 27801063 27801465 733 + . gene_id "ERV316A3_4p15.1a"; transcript_id "ERV316A3_4p15.1a"; locus "ERV316A3_4p15.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0653"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4p15.1a ### chr4 rmsk gene 27872530 27873991 . - . gene_id "ERVLE_4p15.1a"; transcript_id "ERVLE_4p15.1a"; locus "ERVLE_4p15.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0929"; model_cov "1450"; model_pct "25.6"; chr4 rmsk exon 27872530 27873390 1699 - . gene_id "ERVLE_4p15.1a"; transcript_id "ERVLE_4p15.1a"; locus "ERVLE_4p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0929"; repClass "LTR"; repEnd "5292"; repFamily "ERVL"; repLeft "4384"; repStart "-375"; chr4 rmsk exon 27873471 27873991 875 - . gene_id "ERVLE_4p15.1a"; transcript_id "ERVLE_4p15.1a"; locus "ERVLE_4p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0929"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3526"; repStart "-1599"; ### ERV316A3_4p15.1b ### chr4 rmsk gene 27964771 27966089 . - . gene_id "ERV316A3_4p15.1b"; transcript_id "ERV316A3_4p15.1b"; locus "ERV316A3_4p15.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0654"; model_cov "1158"; model_pct "22.2"; chr4 rmsk exon 27964771 27964930 441 - . gene_id "ERV316A3_4p15.1b"; transcript_id "ERV316A3_4p15.1b"; locus "ERV316A3_4p15.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0654"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "1"; repStart "-314"; chr4 rmsk exon 27964931 27966089 2329 - . gene_id "ERV316A3_4p15.1b"; transcript_id "ERV316A3_4p15.1b"; locus "ERV316A3_4p15.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0654"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4068"; repStart "0"; ### ERVLE_4p15.1b ### chr4 rmsk gene 27966284 27967225 . + . gene_id "ERVLE_4p15.1b"; transcript_id "ERVLE_4p15.1b"; locus "ERVLE_4p15.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0930"; model_cov "955"; model_pct "16.9"; chr4 rmsk exon 27966284 27966451 583 + . gene_id "ERVLE_4p15.1b"; transcript_id "ERVLE_4p15.1b"; locus "ERVLE_4p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0930"; repClass "LTR"; repEnd "2642"; repFamily "ERVL"; repLeft "-3025"; repStart "2473"; chr4 rmsk exon 27966460 27967225 3068 + . gene_id "ERVLE_4p15.1b"; transcript_id "ERVLE_4p15.1b"; locus "ERVLE_4p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0930"; repClass "LTR"; repEnd "3788"; repFamily "ERVL"; repLeft "-1879"; repStart "3002"; ### HERVH_4p15.1a ### chr4 rmsk gene 27974889 27981374 . + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0365"; model_cov "4431"; model_pct "57.4"; chr4 rmsk exon 27974889 27975293 2245 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-10"; repStart "-21"; chr4 rmsk exon 27975304 27975575 1978 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "272"; repFamily "ERV1"; repLeft "-7441"; repStart "1"; chr4 rmsk exon 27975576 27977509 10862 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "1213"; chr4 rmsk exon 27978902 27980524 9929 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3500"; chr4 rmsk exon 27980542 27980963 2710 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7277"; chr4 rmsk exon 27980964 27981374 2493 + . gene_id "HERVH_4p15.1a"; transcript_id "HERVH_4p15.1a"; locus "HERVH_4p15.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0365"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL18_4p15.1 ### chr4 rmsk gene 28010845 28014985 . - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0040"; model_cov "2935"; model_pct "48.5"; chr4 rmsk exon 28010845 28011063 654 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "109"; repStart "-9"; chr4 rmsk exon 28011125 28011327 728 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "1"; repStart "-146"; chr4 rmsk exon 28011435 28011478 297 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "5130"; repStart "-874"; chr4 rmsk exon 28011472 28011820 2357 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "4430"; repStart "-1266"; chr4 rmsk exon 28012234 28012271 2357 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "4429"; repFamily "ERVL"; repLeft "4394"; repStart "-1618"; chr4 rmsk exon 28012274 28013727 9524 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2119"; repStart "-2468"; chr4 rmsk exon 28013727 28014088 1413 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1340"; repStart "-4237"; chr4 rmsk exon 28014091 28014358 1460 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "743"; repFamily "ERVL"; repLeft "468"; repStart "-5304"; chr4 rmsk exon 28014349 28014617 1205 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "3"; repStart "-5743"; chr4 rmsk exon 28014618 28014985 734 - . gene_id "HERVL18_4p15.1"; transcript_id "HERVL18_4p15.1"; locus "HERVL18_4p15.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0040"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### ERV316A3_4p15.1c ### chr4 rmsk gene 28385346 28386176 . - . gene_id "ERV316A3_4p15.1c"; transcript_id "ERV316A3_4p15.1c"; locus "ERV316A3_4p15.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0655"; model_cov "858"; model_pct "16.4"; chr4 rmsk exon 28385346 28386176 2001 - . gene_id "ERV316A3_4p15.1c"; transcript_id "ERV316A3_4p15.1c"; locus "ERV316A3_4p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0655"; repClass "LTR"; repEnd "4109"; repFamily "ERVL"; repLeft "3251"; repStart "-1117"; ### ERV316A3_4p15.1d ### chr4 rmsk gene 28790603 28794737 . - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0656"; model_cov "2674"; model_pct "51.2"; chr4 rmsk exon 28790603 28791056 1059 - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0656"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "7"; repStart "-4"; chr4 rmsk exon 28791057 28791247 638 - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0656"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "4966"; repStart "-55"; chr4 rmsk exon 28792202 28792556 2378 - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0656"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2252"; repStart "-2468"; chr4 rmsk exon 28792614 28793799 2378 - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0656"; repClass "LTR"; repEnd "2739"; repFamily "ERVL"; repLeft "1572"; repStart "-2487"; chr4 rmsk exon 28793972 28794737 1445 - . gene_id "ERV316A3_4p15.1d"; transcript_id "ERV316A3_4p15.1d"; locus "ERV316A3_4p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0656"; repClass "LTR"; repEnd "1470"; repFamily "ERVL"; repLeft "674"; repStart "-3756"; ### ERV316A3_4p15.1e ### chr4 rmsk gene 28992643 28997090 . + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0657"; model_cov "3015"; model_pct "57.7"; chr4 rmsk exon 28992643 28992972 910 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "109"; chr4 rmsk exon 28992973 28993251 345 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-4706"; repStart "231"; chr4 rmsk exon 28993802 28994569 1459 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "1463"; repFamily "ERVL"; repLeft "-3763"; repStart "707"; chr4 rmsk exon 28994788 28995762 1459 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "2215"; repFamily "ERVL"; repLeft "-3011"; repStart "1216"; chr4 rmsk exon 28995929 28996259 425 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "2282"; repFamily "ERVL"; repLeft "-2944"; repStart "1943"; chr4 rmsk exon 28996458 28996908 648 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "-2247"; repStart "2508"; chr4 rmsk exon 28996936 28997090 369 + . gene_id "ERV316A3_4p15.1e"; transcript_id "ERV316A3_4p15.1e"; locus "ERV316A3_4p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0657"; repClass "LTR"; repEnd "3487"; repFamily "ERVL"; repLeft "-1739"; repStart "3326"; ### ERV316A3_4p15.1f ### chr4 rmsk gene 29000197 29001164 . + . gene_id "ERV316A3_4p15.1f"; transcript_id "ERV316A3_4p15.1f"; locus "ERV316A3_4p15.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0658"; model_cov "678"; model_pct "13.0"; chr4 rmsk exon 29000197 29000878 1222 + . gene_id "ERV316A3_4p15.1f"; transcript_id "ERV316A3_4p15.1f"; locus "ERV316A3_4p15.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0658"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4548"; chr4 rmsk exon 29000879 29001164 404 + . gene_id "ERV316A3_4p15.1f"; transcript_id "ERV316A3_4p15.1f"; locus "ERV316A3_4p15.1f"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0658"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "-179"; repStart "1"; ### HERVL_4p15.1a ### chr4 rmsk gene 29755956 29757392 . + . gene_id "HERVL_4p15.1a"; transcript_id "HERVL_4p15.1a"; locus "HERVL_4p15.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0350"; model_cov "853"; model_pct "15.1"; chr4 rmsk exon 29755956 29756352 2901 + . gene_id "HERVL_4p15.1a"; transcript_id "HERVL_4p15.1a"; locus "HERVL_4p15.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0350"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "5"; chr4 rmsk exon 29756553 29757392 6125 + . gene_id "HERVL_4p15.1a"; transcript_id "HERVL_4p15.1a"; locus "HERVL_4p15.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0350"; repClass "LTR"; repEnd "1085"; repFamily "ERVL"; repLeft "-4569"; repStart "232"; ### HERVL_4p15.1b ### chr4 rmsk gene 29784304 29786709 . - . gene_id "HERVL_4p15.1b"; transcript_id "HERVL_4p15.1b"; locus "HERVL_4p15.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0351"; model_cov "1963"; model_pct "34.7"; chr4 rmsk exon 29784304 29784749 2660 - . gene_id "HERVL_4p15.1b"; transcript_id "HERVL_4p15.1b"; locus "HERVL_4p15.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0351"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 29784750 29786709 15196 - . gene_id "HERVL_4p15.1b"; transcript_id "HERVL_4p15.1b"; locus "HERVL_4p15.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0351"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3691"; repStart "0"; ### ERV316A3_4p15.1g ### chr4 rmsk gene 29839621 29842183 . - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0659"; model_cov "1668"; model_pct "31.9"; chr4 rmsk exon 29839621 29839791 376 - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0659"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "252"; repStart "-10"; chr4 rmsk exon 29839780 29839929 438 - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0659"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "267"; repStart "-18"; chr4 rmsk exon 29840188 29841398 1363 - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0659"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "919"; repStart "-3114"; chr4 rmsk exon 29841410 29841578 291 - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0659"; repClass "LTR"; repEnd "850"; repFamily "ERVL"; repLeft "678"; repStart "-4376"; chr4 rmsk exon 29841878 29842183 429 - . gene_id "ERV316A3_4p15.1g"; transcript_id "ERV316A3_4p15.1g"; locus "ERV316A3_4p15.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0659"; repClass "LTR"; repEnd "677"; repFamily "ERVL"; repLeft "374"; repStart "-4549"; ### MER4_4p15.1a ### chr4 rmsk gene 29857902 29865411 . + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0198"; model_cov "7091"; model_pct "100.0"; chr4 rmsk exon 29857902 29858383 2745 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0198"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 29858387 29860760 12561 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0198"; repClass "LTR"; repEnd "2990"; repFamily "ERV1"; repLeft "-3608"; repStart "-77"; chr4 rmsk exon 29861003 29861982 12561 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0198"; repClass "LTR"; repEnd "4259"; repFamily "ERV1"; repLeft "-2339"; repStart "2991"; chr4 rmsk exon 29861954 29863887 16245 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0198"; repClass "LTR"; repEnd "5816"; repFamily "ERV1"; repLeft "-782"; repStart "3837"; chr4 rmsk exon 29864196 29864958 16245 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0198"; repClass "LTR"; repEnd "6594"; repFamily "ERV1"; repLeft "-4"; repStart "5817"; chr4 rmsk exon 29864966 29865411 2811 + . gene_id "MER4_4p15.1a"; transcript_id "MER4_4p15.1a"; locus "MER4_4p15.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0198"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_4p15.1a ### chr4 rmsk gene 30500725 30503027 . + . gene_id "ERVLB4_4p15.1a"; transcript_id "ERVLB4_4p15.1a"; locus "ERVLB4_4p15.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0421"; model_cov "1846"; model_pct "32.3"; chr4 rmsk exon 30500725 30501174 1390 + . gene_id "ERVLB4_4p15.1a"; transcript_id "ERVLB4_4p15.1a"; locus "ERVLB4_4p15.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0421"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr4 rmsk exon 30501178 30503027 8750 + . gene_id "ERVLB4_4p15.1a"; transcript_id "ERVLB4_4p15.1a"; locus "ERVLB4_4p15.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0421"; repClass "LTR"; repEnd "1805"; repFamily "ERVL"; repLeft "-3909"; repStart "-41"; ### ERVLB4_4p15.1b ### chr4 rmsk gene 30506126 30509643 . + . gene_id "ERVLB4_4p15.1b"; transcript_id "ERVLB4_4p15.1b"; locus "ERVLB4_4p15.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0422"; model_cov "2748"; model_pct "48.1"; chr4 rmsk exon 30506126 30508373 12274 + . gene_id "ERVLB4_4p15.1b"; transcript_id "ERVLB4_4p15.1b"; locus "ERVLB4_4p15.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0422"; repClass "LTR"; repEnd "4917"; repFamily "ERVL"; repLeft "-797"; repStart "2663"; chr4 rmsk exon 30508599 30509121 2064 + . gene_id "ERVLB4_4p15.1b"; transcript_id "ERVLB4_4p15.1b"; locus "ERVLB4_4p15.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0422"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5218"; chr4 rmsk exon 30509124 30509643 2055 + . gene_id "ERVLB4_4p15.1b"; transcript_id "ERVLB4_4p15.1b"; locus "ERVLB4_4p15.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0422"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_4p15.1h ### chr4 rmsk gene 31316096 31318144 . - . gene_id "ERV316A3_4p15.1h"; transcript_id "ERV316A3_4p15.1h"; locus "ERV316A3_4p15.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0661"; model_cov "1642"; model_pct "31.4"; chr4 rmsk exon 31316096 31316495 734 - . gene_id "ERV316A3_4p15.1h"; transcript_id "ERV316A3_4p15.1h"; locus "ERV316A3_4p15.1h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0661"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-9"; chr4 rmsk exon 31316496 31317824 2704 - . gene_id "ERV316A3_4p15.1h"; transcript_id "ERV316A3_4p15.1h"; locus "ERV316A3_4p15.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0661"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3868"; repStart "0"; chr4 rmsk exon 31317866 31318144 798 - . gene_id "ERV316A3_4p15.1h"; transcript_id "ERV316A3_4p15.1h"; locus "ERV316A3_4p15.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0661"; repClass "LTR"; repEnd "3803"; repFamily "ERVL"; repLeft "3519"; repStart "-1423"; ### HUERSP1_4p15.1 ### chr4 rmsk gene 31461431 31467432 . - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0056"; model_cov "4864"; model_pct "77.7"; chr4 rmsk exon 31461431 31462014 4133 - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0056"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "1"; repStart "-104"; chr4 rmsk exon 31462015 31462699 8804 - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0056"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5591"; repStart "0"; chr4 rmsk exon 31463214 31464511 8804 - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0056"; repClass "LTR"; repEnd "5590"; repFamily "ERV1"; repLeft "4138"; repStart "-673"; chr4 rmsk exon 31464502 31467288 13133 - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0056"; repClass "LTR"; repEnd "2741"; repFamily "ERV1"; repLeft "1"; repStart "-3522"; chr4 rmsk exon 31467289 31467432 1063 - . gene_id "HUERSP1_4p15.1"; transcript_id "HUERSP1_4p15.1"; locus "HUERSP1_4p15.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0056"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "546"; repStart "0"; ### HERVL_4p15.1c ### chr4 rmsk gene 31501329 31507892 . + . gene_id "HERVL_4p15.1c"; transcript_id "HERVL_4p15.1c"; locus "HERVL_4p15.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0352"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 31501329 31501795 3227 + . gene_id "HERVL_4p15.1c"; transcript_id "HERVL_4p15.1c"; locus "HERVL_4p15.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0352"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr4 rmsk exon 31501796 31507425 43677 + . gene_id "HERVL_4p15.1c"; transcript_id "HERVL_4p15.1c"; locus "HERVL_4p15.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0352"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 31507426 31507816 3037 + . gene_id "HERVL_4p15.1c"; transcript_id "HERVL_4p15.1c"; locus "HERVL_4p15.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0352"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr4 rmsk exon 31507853 31507892 3037 + . gene_id "HERVL_4p15.1c"; transcript_id "HERVL_4p15.1c"; locus "HERVL_4p15.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0352"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "399"; ### MER101_4p15.1 ### chr4 rmsk gene 31614854 31616350 . - . gene_id "MER101_4p15.1"; transcript_id "MER101_4p15.1"; locus "MER101_4p15.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0114"; model_cov "1834"; model_pct "27.6"; chr4 rmsk exon 31614854 31615374 2336 - . gene_id "MER101_4p15.1"; transcript_id "MER101_4p15.1"; locus "MER101_4p15.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0114"; repClass "LTR"; repEnd "3417"; repFamily "ERV1"; repLeft "2903"; repStart "-3222"; chr4 rmsk exon 31615371 31615962 824 - . gene_id "MER101_4p15.1"; transcript_id "MER101_4p15.1"; locus "MER101_4p15.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0114"; repClass "LTR"; repEnd "2689"; repFamily "ERV1"; repLeft "1559"; repStart "-3950"; chr4 rmsk exon 31616165 31616350 467 - . gene_id "MER101_4p15.1"; transcript_id "MER101_4p15.1"; locus "MER101_4p15.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0114"; repClass "LTR"; repEnd "49"; repFamily "ERV1"; repLeft "-141"; repStart "-6590"; ### ERVLB4_4p15.1c ### chr4 rmsk gene 31871698 31873279 . + . gene_id "ERVLB4_4p15.1c"; transcript_id "ERVLB4_4p15.1c"; locus "ERVLB4_4p15.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0424"; model_cov "1055"; model_pct "18.5"; chr4 rmsk exon 31871698 31872170 1579 + . gene_id "ERVLB4_4p15.1c"; transcript_id "ERVLB4_4p15.1c"; locus "ERVLB4_4p15.1c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0424"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-6"; repStart "1"; chr4 rmsk exon 31872179 31872261 412 + . gene_id "ERVLB4_4p15.1c"; transcript_id "ERVLB4_4p15.1c"; locus "ERVLB4_4p15.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0424"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "-5628"; repStart "3"; chr4 rmsk exon 31872338 31873279 4932 + . gene_id "ERVLB4_4p15.1c"; transcript_id "ERVLB4_4p15.1c"; locus "ERVLB4_4p15.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0424"; repClass "LTR"; repEnd "2391"; repFamily "ERVL"; repLeft "-3323"; repStart "1419"; ### PABLB_4p15.1 ### chr4 rmsk gene 31985397 31988260 . - . gene_id "PABLB_4p15.1"; transcript_id "PABLB_4p15.1"; locus "PABLB_4p15.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0026"; model_cov "2367"; model_pct "33.2"; chr4 rmsk exon 31985397 31985835 623 - . gene_id "PABLB_4p15.1"; transcript_id "PABLB_4p15.1"; locus "PABLB_4p15.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0026"; repClass "LTR"; repEnd "6627"; repFamily "ERV1"; repLeft "6187"; repStart "-495"; chr4 rmsk exon 31985904 31987428 889 - . gene_id "PABLB_4p15.1"; transcript_id "PABLB_4p15.1"; locus "PABLB_4p15.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0026"; repClass "LTR"; repEnd "6211"; repFamily "ERV1"; repLeft "4699"; repStart "-911"; chr4 rmsk exon 31987852 31988260 508 - . gene_id "PABLB_4p15.1"; transcript_id "PABLB_4p15.1"; locus "PABLB_4p15.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0026"; repClass "LTR"; repEnd "5356"; repFamily "ERV1"; repLeft "4941"; repStart "-1766"; ### HERVL_4p15.1d ### chr4 rmsk gene 32059951 32063699 . - . gene_id "HERVL_4p15.1d"; transcript_id "HERVL_4p15.1d"; locus "HERVL_4p15.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0353"; model_cov "2649"; model_pct "46.9"; chr4 rmsk exon 32059951 32060518 1899 - . gene_id "HERVL_4p15.1d"; transcript_id "HERVL_4p15.1d"; locus "HERVL_4p15.1d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0353"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 32060519 32062961 17407 - . gene_id "HERVL_4p15.1d"; transcript_id "HERVL_4p15.1d"; locus "HERVL_4p15.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0353"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3184"; repStart "0"; chr4 rmsk exon 32063516 32063699 1132 - . gene_id "HERVL_4p15.1d"; transcript_id "HERVL_4p15.1d"; locus "HERVL_4p15.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0353"; repClass "LTR"; repEnd "3188"; repFamily "ERVL"; repLeft "3009"; repStart "-2466"; ### ERVLE_4p15.1c ### chr4 rmsk gene 32219403 32220473 . + . gene_id "ERVLE_4p15.1c"; transcript_id "ERVLE_4p15.1c"; locus "ERVLE_4p15.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0931"; model_cov "966"; model_pct "17.0"; chr4 rmsk exon 32219403 32219530 257 + . gene_id "ERVLE_4p15.1c"; transcript_id "ERVLE_4p15.1c"; locus "ERVLE_4p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0931"; repClass "LTR"; repEnd "143"; repFamily "ERVL"; repLeft "-5524"; repStart "4"; chr4 rmsk exon 32219568 32219830 363 + . gene_id "ERVLE_4p15.1c"; transcript_id "ERVLE_4p15.1c"; locus "ERVLE_4p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0931"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "-4538"; repStart "863"; chr4 rmsk exon 32219914 32220473 876 + . gene_id "ERVLE_4p15.1c"; transcript_id "ERVLE_4p15.1c"; locus "ERVLE_4p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0931"; repClass "LTR"; repEnd "1836"; repFamily "ERVL"; repLeft "-3831"; repStart "1275"; ### ERVLE_4p15.1d ### chr4 rmsk gene 32312511 32317090 . - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0932"; model_cov "3317"; model_pct "58.5"; chr4 rmsk exon 32312511 32312562 255 - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0932"; repClass "LTR"; repEnd "5300"; repFamily "ERVL"; repLeft "5250"; repStart "-367"; chr4 rmsk exon 32313285 32314412 2566 - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0932"; repClass "LTR"; repEnd "4642"; repFamily "ERVL"; repLeft "3492"; repStart "-1025"; chr4 rmsk exon 32314773 32315829 2566 - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0932"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2337"; repStart "-2176"; chr4 rmsk exon 32315844 32316184 421 - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0932"; repClass "LTR"; repEnd "2654"; repFamily "ERVL"; repLeft "2311"; repStart "-3013"; chr4 rmsk exon 32316482 32317090 853 - . gene_id "ERVLE_4p15.1d"; transcript_id "ERVLE_4p15.1d"; locus "ERVLE_4p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0932"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "1654"; repStart "-3393"; ### MER4B_4p15.1a ### chr4 rmsk gene 32339689 32341170 . + . gene_id "MER4B_4p15.1a"; transcript_id "MER4B_4p15.1a"; locus "MER4B_4p15.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0114"; model_cov "712"; model_pct "10.5"; chr4 rmsk exon 32339689 32340418 3011 + . gene_id "MER4B_4p15.1a"; transcript_id "MER4B_4p15.1a"; locus "MER4B_4p15.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0114"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6046"; chr4 rmsk exon 32340419 32341170 2345 + . gene_id "MER4B_4p15.1a"; transcript_id "MER4B_4p15.1a"; locus "MER4B_4p15.1a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0114"; repClass "LTR"; repEnd "872"; repFamily "ERV1"; repLeft "-28"; repStart "1"; ### LTR19_4p15.1a ### chr4 rmsk gene 32454712 32456768 . + . gene_id "LTR19_4p15.1a"; transcript_id "LTR19_4p15.1a"; locus "LTR19_4p15.1a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0012"; model_cov "1435"; model_pct "25.7"; chr4 rmsk exon 32454712 32455898 5455 + . gene_id "LTR19_4p15.1a"; transcript_id "LTR19_4p15.1a"; locus "LTR19_4p15.1a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0012"; repClass "LTR"; repEnd "4495"; repFamily "ERV1"; repLeft "-1091"; repStart "3385"; chr4 rmsk exon 32456238 32456555 4435 + . gene_id "LTR19_4p15.1a"; transcript_id "LTR19_4p15.1a"; locus "LTR19_4p15.1a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0012"; repClass "LTR"; repEnd "5053"; repFamily "ERV1"; repLeft "-533"; repStart "4728"; chr4 rmsk exon 32456601 32456768 1095 + . gene_id "LTR19_4p15.1a"; transcript_id "LTR19_4p15.1a"; locus "LTR19_4p15.1a"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0012"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "0"; repStart "403"; ### ERV316A3_4p15.1i ### chr4 rmsk gene 32462309 32463901 . + . gene_id "ERV316A3_4p15.1i"; transcript_id "ERV316A3_4p15.1i"; locus "ERV316A3_4p15.1i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0662"; model_cov "1560"; model_pct "29.9"; chr4 rmsk exon 32462309 32462900 1116 + . gene_id "ERV316A3_4p15.1i"; transcript_id "ERV316A3_4p15.1i"; locus "ERV316A3_4p15.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0662"; repClass "LTR"; repEnd "3874"; repFamily "ERVL"; repLeft "-1352"; repStart "3230"; chr4 rmsk exon 32462952 32463901 780 + . gene_id "ERV316A3_4p15.1i"; transcript_id "ERV316A3_4p15.1i"; locus "ERV316A3_4p15.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0662"; repClass "LTR"; repEnd "4875"; repFamily "ERVL"; repLeft "-351"; repStart "3959"; ### ERVLE_4p15.1e ### chr4 rmsk gene 32490510 32492613 . + . gene_id "ERVLE_4p15.1e"; transcript_id "ERVLE_4p15.1e"; locus "ERVLE_4p15.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0933"; model_cov "810"; model_pct "14.3"; chr4 rmsk exon 32490510 32490688 449 + . gene_id "ERVLE_4p15.1e"; transcript_id "ERVLE_4p15.1e"; locus "ERVLE_4p15.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0933"; repClass "LTR"; repEnd "4075"; repFamily "ERVL"; repLeft "-1592"; repStart "3885"; chr4 rmsk exon 32491737 32491904 367 + . gene_id "ERVLE_4p15.1e"; transcript_id "ERVLE_4p15.1e"; locus "ERVLE_4p15.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0933"; repClass "LTR"; repEnd "4275"; repFamily "ERVL"; repLeft "-1392"; repStart "4096"; chr4 rmsk exon 32492181 32492613 1248 + . gene_id "ERVLE_4p15.1e"; transcript_id "ERVLE_4p15.1e"; locus "ERVLE_4p15.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0933"; repClass "LTR"; repEnd "5041"; repFamily "ERVL"; repLeft "-626"; repStart "4600"; ### ERV316A3_4p15.1j ### chr4 rmsk gene 32578856 32582199 . - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0664"; model_cov "1957"; model_pct "37.4"; chr4 rmsk exon 32578856 32578926 342 - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0664"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "367"; repStart "-2"; chr4 rmsk exon 32578961 32579306 905 - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0664"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "11"; repStart "-74"; chr4 rmsk exon 32579447 32579799 1048 - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0664"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "4751"; repStart "-123"; chr4 rmsk exon 32579846 32581251 2850 - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0664"; repClass "LTR"; repEnd "4655"; repFamily "ERVL"; repLeft "3230"; repStart "-571"; chr4 rmsk exon 32582020 32582199 570 - . gene_id "ERV316A3_4p15.1j"; transcript_id "ERV316A3_4p15.1j"; locus "ERV316A3_4p15.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0664"; repClass "LTR"; repEnd "1524"; repFamily "ERVL"; repLeft "1344"; repStart "-3702"; ### ERVL_4p15.1a ### chr4 rmsk gene 32614751 32616962 . + . gene_id "ERVL_4p15.1a"; transcript_id "ERVL_4p15.1a"; locus "ERVL_4p15.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0095"; model_cov "1476"; model_pct "25.6"; chr4 rmsk exon 32614751 32615213 1429 + . gene_id "ERVL_4p15.1a"; transcript_id "ERVL_4p15.1a"; locus "ERVL_4p15.1a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0095"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "-12"; repStart "25"; chr4 rmsk exon 32615222 32615561 5738 + . gene_id "ERVL_4p15.1a"; transcript_id "ERVL_4p15.1a"; locus "ERVL_4p15.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0095"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "-5405"; repStart "2"; chr4 rmsk exon 32615688 32616721 5738 + . gene_id "ERVL_4p15.1a"; transcript_id "ERVL_4p15.1a"; locus "ERVL_4p15.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0095"; repClass "LTR"; repEnd "1353"; repFamily "ERVL"; repLeft "-4404"; repStart "353"; chr4 rmsk exon 32616833 32616962 675 + . gene_id "ERVL_4p15.1a"; transcript_id "ERVL_4p15.1a"; locus "ERVL_4p15.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0095"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "-4150"; repStart "1481"; ### ERVLB4_4p15.1d ### chr4 rmsk gene 32616956 32619575 . + . gene_id "ERVLB4_4p15.1d"; transcript_id "ERVLB4_4p15.1d"; locus "ERVLB4_4p15.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0425"; model_cov "2161"; model_pct "37.8"; chr4 rmsk exon 32616956 32617686 10601 + . gene_id "ERVLB4_4p15.1d"; transcript_id "ERVLB4_4p15.1d"; locus "ERVLB4_4p15.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0425"; repClass "LTR"; repEnd "3947"; repFamily "ERVL"; repLeft "-1767"; repStart "3234"; chr4 rmsk exon 32617756 32618576 10601 + . gene_id "ERVLB4_4p15.1d"; transcript_id "ERVLB4_4p15.1d"; locus "ERVLB4_4p15.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0425"; repClass "LTR"; repEnd "4762"; repFamily "ERVL"; repLeft "-952"; repStart "3948"; chr4 rmsk exon 32618875 32619512 10601 + . gene_id "ERVLB4_4p15.1d"; transcript_id "ERVLB4_4p15.1d"; locus "ERVLB4_4p15.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0425"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "-317"; repStart "4763"; chr4 rmsk exon 32619535 32619575 280 + . gene_id "ERVLB4_4p15.1d"; transcript_id "ERVLB4_4p15.1d"; locus "ERVLB4_4p15.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0425"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "516"; ### LTR57_4p15.1 ### chr4 rmsk gene 32713348 32714652 . - . gene_id "LTR57_4p15.1"; transcript_id "LTR57_4p15.1"; locus "LTR57_4p15.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0054"; model_cov "1298"; model_pct "24.3"; chr4 rmsk exon 32713348 32714652 6195 - . gene_id "LTR57_4p15.1"; transcript_id "LTR57_4p15.1"; locus "LTR57_4p15.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0054"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "298"; repStart "-3747"; ### ERVLE_4p15.1f ### chr4 rmsk gene 32775679 32776493 . - . gene_id "ERVLE_4p15.1f"; transcript_id "ERVLE_4p15.1f"; locus "ERVLE_4p15.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0934"; model_cov "863"; model_pct "15.2"; chr4 rmsk exon 32775679 32776493 2030 - . gene_id "ERVLE_4p15.1f"; transcript_id "ERVLE_4p15.1f"; locus "ERVLE_4p15.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0934"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4357"; repStart "-447"; ### MER4_4p15.1b ### chr4 rmsk gene 32823284 32826854 . - . gene_id "MER4_4p15.1b"; transcript_id "MER4_4p15.1b"; locus "MER4_4p15.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0200"; model_cov "4661"; model_pct "70.6"; chr4 rmsk exon 32823284 32823732 2811 - . gene_id "MER4_4p15.1b"; transcript_id "MER4_4p15.1b"; locus "MER4_4p15.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0200"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 32823741 32826854 14292 - . gene_id "MER4_4p15.1b"; transcript_id "MER4_4p15.1b"; locus "MER4_4p15.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0200"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "1935"; repStart "-2"; ### MER4_4p15.1c ### chr4 rmsk gene 32827095 32829491 . - . gene_id "MER4_4p15.1c"; transcript_id "MER4_4p15.1c"; locus "MER4_4p15.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0201"; model_cov "2132"; model_pct "32.3"; chr4 rmsk exon 32827095 32827511 14292 - . gene_id "MER4_4p15.1c"; transcript_id "MER4_4p15.1c"; locus "MER4_4p15.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0201"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5970"; repStart "-2"; chr4 rmsk exon 32828362 32829442 10681 - . gene_id "MER4_4p15.1c"; transcript_id "MER4_4p15.1c"; locus "MER4_4p15.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0201"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "670"; repStart "-4472"; chr4 rmsk exon 32829441 32829491 350 - . gene_id "MER4_4p15.1c"; transcript_id "MER4_4p15.1c"; locus "MER4_4p15.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0201"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; ### PRIMAX_4p15.1 ### chr4 rmsk gene 33223516 33225704 . - . gene_id "PRIMAX_4p15.1"; transcript_id "PRIMAX_4p15.1"; locus "PRIMAX_4p15.1"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0010"; model_cov "1163"; model_pct "28.4"; chr4 rmsk exon 33223516 33223600 576 - . gene_id "PRIMAX_4p15.1"; transcript_id "PRIMAX_4p15.1"; locus "PRIMAX_4p15.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0010"; repClass "LTR"; repEnd "2679"; repFamily "ERV1"; repLeft "2595"; repStart "-1423"; chr4 rmsk exon 33224118 33224632 4835 - . gene_id "PRIMAX_4p15.1"; transcript_id "PRIMAX_4p15.1"; locus "PRIMAX_4p15.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0010"; repClass "LTR"; repEnd "2602"; repFamily "ERV1"; repLeft "2095"; repStart "-1500"; chr4 rmsk exon 33224979 33225361 4835 - . gene_id "PRIMAX_4p15.1"; transcript_id "PRIMAX_4p15.1"; locus "PRIMAX_4p15.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0010"; repClass "LTR"; repEnd "2094"; repFamily "ERV1"; repLeft "1704"; repStart "-2008"; chr4 rmsk exon 33225522 33225704 901 - . gene_id "PRIMAX_4p15.1"; transcript_id "PRIMAX_4p15.1"; locus "PRIMAX_4p15.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0010"; repClass "LTR"; repEnd "1713"; repFamily "ERV1"; repLeft "1531"; repStart "-2389"; ### LTR19_4p15.1b ### chr4 rmsk gene 33249958 33256380 . - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0013"; model_cov "5193"; model_pct "93.0"; chr4 rmsk exon 33249958 33250376 2198 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "1"; repStart "-45"; chr4 rmsk exon 33250377 33251133 30388 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "4841"; repStart "0"; chr4 rmsk exon 33251440 33253899 30388 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "4840"; repFamily "ERV1"; repLeft "2375"; repStart "-746"; chr4 rmsk exon 33254194 33255163 30388 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "2374"; repFamily "ERV1"; repLeft "1436"; repStart "-3212"; chr4 rmsk exon 33255158 33256107 5118 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "-810"; repFamily "ERV1"; repLeft "-1855"; repStart "-6396"; chr4 rmsk exon 33256272 33256380 560 - . gene_id "LTR19_4p15.1b"; transcript_id "LTR19_4p15.1b"; locus "LTR19_4p15.1b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0013"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "374"; repStart "-1"; ### MER4_4p15.1d ### chr4 rmsk gene 33409969 33415961 . + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0202"; model_cov "6232"; model_pct "94.5"; chr4 rmsk exon 33409969 33410393 2194 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0202"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 33410397 33410729 2750 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0202"; repClass "LTR"; repEnd "360"; repFamily "ERV1"; repLeft "-6238"; repStart "1"; chr4 rmsk exon 33410764 33410952 2750 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0202"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "-6035"; repStart "279"; chr4 rmsk exon 33411890 33412523 14621 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0202"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "-4640"; repStart "1006"; chr4 rmsk exon 33412766 33415846 14621 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0202"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "1959"; chr4 rmsk exon 33415887 33415961 528 + . gene_id "MER4_4p15.1d"; transcript_id "MER4_4p15.1d"; locus "MER4_4p15.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0202"; repClass "LTR"; repEnd "134"; repFamily "ERV1"; repLeft "-338"; repStart "60"; ### MER4B_4p15.1b ### chr4 rmsk gene 33410924 33411875 . + . gene_id "MER4B_4p15.1b"; transcript_id "MER4B_4p15.1b"; locus "MER4B_4p15.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0115"; model_cov "978"; model_pct "14.5"; chr4 rmsk exon 33410924 33411875 5153 + . gene_id "MER4B_4p15.1b"; transcript_id "MER4B_4p15.1b"; locus "MER4B_4p15.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0115"; repClass "LTR"; repEnd "1337"; repFamily "ERV1"; repLeft "-5421"; repStart "359"; ### HUERSP3B_4p15.1 ### chr4 rmsk gene 33591009 33600366 . + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0039"; model_cov "7004"; model_pct "94.4"; chr4 rmsk exon 33591009 33591648 3447 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 33591649 33594047 9843 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "-6518"; repStart "-1497"; chr4 rmsk exon 33594036 33594606 3673 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2098"; chr4 rmsk exon 33595046 33595373 20570 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "3398"; repFamily "ERV1"; repLeft "-4020"; repStart "3073"; chr4 rmsk exon 33595667 33599147 20570 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "6939"; repFamily "ERV1"; repLeft "-479"; repStart "3399"; chr4 rmsk exon 33599489 33599730 951 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "7219"; chr4 rmsk exon 33599735 33600366 3035 + . gene_id "HUERSP3B_4p15.1"; transcript_id "HUERSP3B_4p15.1"; locus "HUERSP3B_4p15.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0039"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4p15.1g ### chr4 rmsk gene 33637859 33640394 . - . gene_id "ERVLE_4p15.1g"; transcript_id "ERVLE_4p15.1g"; locus "ERVLE_4p15.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0937"; model_cov "1936"; model_pct "34.2"; chr4 rmsk exon 33637859 33638071 267 - . gene_id "ERVLE_4p15.1g"; transcript_id "ERVLE_4p15.1g"; locus "ERVLE_4p15.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0937"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "5050"; repStart "-403"; chr4 rmsk exon 33638214 33638678 1411 - . gene_id "ERVLE_4p15.1g"; transcript_id "ERVLE_4p15.1g"; locus "ERVLE_4p15.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0937"; repClass "LTR"; repEnd "4670"; repFamily "ERVL"; repLeft "4197"; repStart "-997"; chr4 rmsk exon 33639042 33639284 1411 - . gene_id "ERVLE_4p15.1g"; transcript_id "ERVLE_4p15.1g"; locus "ERVLE_4p15.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0937"; repClass "LTR"; repEnd "4196"; repFamily "ERVL"; repLeft "3959"; repStart "-1471"; chr4 rmsk exon 33639535 33640394 681 - . gene_id "ERVLE_4p15.1g"; transcript_id "ERVLE_4p15.1g"; locus "ERVLE_4p15.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0937"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "2594"; repStart "-2061"; ### HERVL_4p15.1e ### chr4 rmsk gene 33730233 33736923 . - . gene_id "HERVL_4p15.1e"; transcript_id "HERVL_4p15.1e"; locus "HERVL_4p15.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0354"; model_cov "5363"; model_pct "94.9"; chr4 rmsk exon 33730233 33730301 360 - . gene_id "HERVL_4p15.1e"; transcript_id "HERVL_4p15.1e"; locus "HERVL_4p15.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0354"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "333"; repStart "-47"; chr4 rmsk exon 33730333 33730702 2266 - . gene_id "HERVL_4p15.1e"; transcript_id "HERVL_4p15.1e"; locus "HERVL_4p15.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0354"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "5"; repStart "-81"; chr4 rmsk exon 33730705 33736036 40019 - . gene_id "HERVL_4p15.1e"; transcript_id "HERVL_4p15.1e"; locus "HERVL_4p15.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0354"; repClass "LTR"; repEnd "5482"; repFamily "ERVL"; repLeft "119"; repStart "-172"; chr4 rmsk exon 33736535 33736923 2860 - . gene_id "HERVL_4p15.1e"; transcript_id "HERVL_4p15.1e"; locus "HERVL_4p15.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0354"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-60"; ### HERVW_4p15.1 ### chr4 rmsk gene 33741539 33743350 . + . gene_id "HERVW_4p15.1"; transcript_id "HERVW_4p15.1"; locus "HERVW_4p15.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0088"; model_cov "1042"; model_pct "12.1"; chr4 rmsk exon 33741539 33742247 5791 + . gene_id "HERVW_4p15.1"; transcript_id "HERVW_4p15.1"; locus "HERVW_4p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0088"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5305"; chr4 rmsk exon 33742241 33742279 283 + . gene_id "HERVW_4p15.1"; transcript_id "HERVW_4p15.1"; locus "HERVW_4p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0088"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 33742270 33742559 2334 + . gene_id "HERVW_4p15.1"; transcript_id "HERVW_4p15.1"; locus "HERVW_4p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0088"; repClass "LTR"; repEnd "8625"; repFamily "ERV1"; repLeft "-1"; repStart "8335"; chr4 rmsk exon 33742561 33743350 6033 + . gene_id "HERVW_4p15.1"; transcript_id "HERVW_4p15.1"; locus "HERVW_4p15.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0088"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4p15.1k ### chr4 rmsk gene 34118193 34120567 . - . gene_id "ERV316A3_4p15.1k"; transcript_id "ERV316A3_4p15.1k"; locus "ERV316A3_4p15.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0666"; model_cov "1364"; model_pct "26.1"; chr4 rmsk exon 34118193 34118268 293 - . gene_id "ERV316A3_4p15.1k"; transcript_id "ERV316A3_4p15.1k"; locus "ERV316A3_4p15.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0666"; repClass "LTR"; repEnd "2316"; repFamily "ERVL"; repLeft "2245"; repStart "-2910"; chr4 rmsk exon 34118265 34119329 1536 - . gene_id "ERV316A3_4p15.1k"; transcript_id "ERV316A3_4p15.1k"; locus "ERV316A3_4p15.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0666"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "1006"; repStart "-3144"; chr4 rmsk exon 34119622 34119832 573 - . gene_id "ERV316A3_4p15.1k"; transcript_id "ERV316A3_4p15.1k"; locus "ERV316A3_4p15.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0666"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "428"; repStart "-4581"; chr4 rmsk exon 34120203 34120567 770 - . gene_id "ERV316A3_4p15.1k"; transcript_id "ERV316A3_4p15.1k"; locus "ERV316A3_4p15.1k"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0666"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "1"; repStart "-92"; ### ERV316A3_4p15.1l ### chr4 rmsk gene 34308817 34311349 . + . gene_id "ERV316A3_4p15.1l"; transcript_id "ERV316A3_4p15.1l"; locus "ERV316A3_4p15.1l"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0667"; model_cov "1776"; model_pct "34.0"; chr4 rmsk exon 34308817 34309513 1055 + . gene_id "ERV316A3_4p15.1l"; transcript_id "ERV316A3_4p15.1l"; locus "ERV316A3_4p15.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0667"; repClass "LTR"; repEnd "3986"; repFamily "ERVL"; repLeft "-1240"; repStart "3045"; chr4 rmsk exon 34309670 34310145 1308 + . gene_id "ERV316A3_4p15.1l"; transcript_id "ERV316A3_4p15.1l"; locus "ERV316A3_4p15.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0667"; repClass "LTR"; repEnd "4864"; repFamily "ERVL"; repLeft "-362"; repStart "4390"; chr4 rmsk exon 34310566 34310929 1308 + . gene_id "ERV316A3_4p15.1l"; transcript_id "ERV316A3_4p15.1l"; locus "ERV316A3_4p15.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0667"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4865"; chr4 rmsk exon 34310969 34311349 803 + . gene_id "ERV316A3_4p15.1l"; transcript_id "ERV316A3_4p15.1l"; locus "ERV316A3_4p15.1l"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0667"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-15"; repStart "34"; ### ERV316A3_4p15.1m ### chr4 rmsk gene 34314756 34316847 . + . gene_id "ERV316A3_4p15.1m"; transcript_id "ERV316A3_4p15.1m"; locus "ERV316A3_4p15.1m"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0668"; model_cov "1116"; model_pct "21.4"; chr4 rmsk exon 34314756 34315030 537 + . gene_id "ERV316A3_4p15.1m"; transcript_id "ERV316A3_4p15.1m"; locus "ERV316A3_4p15.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0668"; repClass "LTR"; repEnd "1488"; repFamily "ERVL"; repLeft "-3738"; repStart "1225"; chr4 rmsk exon 34315707 34315745 522 + . gene_id "ERV316A3_4p15.1m"; transcript_id "ERV316A3_4p15.1m"; locus "ERV316A3_4p15.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0668"; repClass "LTR"; repEnd "1820"; repFamily "ERVL"; repLeft "-3406"; repStart "1788"; chr4 rmsk exon 34316165 34316490 522 + . gene_id "ERV316A3_4p15.1m"; transcript_id "ERV316A3_4p15.1m"; locus "ERV316A3_4p15.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0668"; repClass "LTR"; repEnd "2528"; repFamily "ERVL"; repLeft "-2698"; repStart "2051"; chr4 rmsk exon 34316523 34316847 295 + . gene_id "ERV316A3_4p15.1m"; transcript_id "ERV316A3_4p15.1m"; locus "ERV316A3_4p15.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0668"; repClass "LTR"; repEnd "4188"; repFamily "ERVL"; repLeft "-1038"; repStart "3844"; ### HERVFRD_4p15.1 ### chr4 rmsk gene 34357182 34364200 . - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0054"; model_cov "5163"; model_pct "71.7"; chr4 rmsk exon 34357182 34357887 4292 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0054"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr4 rmsk exon 34357889 34358261 2525 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0054"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6815"; repStart "-8"; chr4 rmsk exon 34358251 34360504 12001 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0054"; repClass "LTR"; repEnd "6211"; repFamily "ERV1"; repLeft "3930"; repStart "-994"; chr4 rmsk exon 34360529 34361316 3199 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0054"; repClass "LTR"; repEnd "3578"; repFamily "ERV1"; repLeft "2806"; repStart "-3627"; chr4 rmsk exon 34361705 34362866 3991 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0054"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "624"; repStart "-5355"; chr4 rmsk exon 34362854 34363361 3005 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0054"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-6702"; chr4 rmsk exon 34363369 34363508 3813 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0054"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "574"; repStart "-29"; chr4 rmsk exon 34363808 34364200 3813 - . gene_id "HERVFRD_4p15.1"; transcript_id "HERVFRD_4p15.1"; locus "HERVFRD_4p15.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0054"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "184"; repStart "-161"; ### ERV316A3_4p15.1n ### chr4 rmsk gene 34416674 34417540 . + . gene_id "ERV316A3_4p15.1n"; transcript_id "ERV316A3_4p15.1n"; locus "ERV316A3_4p15.1n"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0669"; model_cov "859"; model_pct "16.4"; chr4 rmsk exon 34416674 34417540 2381 + . gene_id "ERV316A3_4p15.1n"; transcript_id "ERV316A3_4p15.1n"; locus "ERV316A3_4p15.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0669"; repClass "LTR"; repEnd "3055"; repFamily "ERVL"; repLeft "-2171"; repStart "2196"; ### ERVLE_4p15.1h ### chr4 rmsk gene 34544165 34545478 . + . gene_id "ERVLE_4p15.1h"; transcript_id "ERVLE_4p15.1h"; locus "ERVLE_4p15.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0941"; model_cov "656"; model_pct "11.6"; chr4 rmsk exon 34544165 34544331 281 + . gene_id "ERVLE_4p15.1h"; transcript_id "ERVLE_4p15.1h"; locus "ERVLE_4p15.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0941"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5118"; repStart "377"; chr4 rmsk exon 34544654 34544841 399 + . gene_id "ERVLE_4p15.1h"; transcript_id "ERVLE_4p15.1h"; locus "ERVLE_4p15.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0941"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "-4456"; repStart "1030"; chr4 rmsk exon 34545174 34545478 437 + . gene_id "ERVLE_4p15.1h"; transcript_id "ERVLE_4p15.1h"; locus "ERVLE_4p15.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0941"; repClass "LTR"; repEnd "1690"; repFamily "ERVL"; repLeft "-3977"; repStart "1387"; ### ERVL_4p15.1b ### chr4 rmsk gene 34545884 34547130 . + . gene_id "ERVL_4p15.1b"; transcript_id "ERVL_4p15.1b"; locus "ERVL_4p15.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0096"; model_cov "954"; model_pct "16.6"; chr4 rmsk exon 34545884 34546121 354 + . gene_id "ERVL_4p15.1b"; transcript_id "ERVL_4p15.1b"; locus "ERVL_4p15.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0096"; repClass "LTR"; repEnd "4311"; repFamily "ERVL"; repLeft "-1446"; repStart "4072"; chr4 rmsk exon 34546432 34547130 345 + . gene_id "ERVL_4p15.1b"; transcript_id "ERVL_4p15.1b"; locus "ERVL_4p15.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0096"; repClass "LTR"; repEnd "5463"; repFamily "ERVL"; repLeft "-294"; repStart "4748"; ### ERVL_4p15.1c ### chr4 rmsk gene 34692072 34697380 . - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0097"; model_cov "3224"; model_pct "56.0"; chr4 rmsk exon 34692072 34692096 278 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "494"; repFamily "ERVL"; repLeft "469"; repStart "-26"; chr4 rmsk exon 34692127 34692581 2397 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "2"; repStart "-61"; chr4 rmsk exon 34692679 34694688 16282 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "3347"; repFamily "ERVL"; repLeft "1308"; repStart "-2410"; chr4 rmsk exon 34694979 34695615 16282 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "1307"; repFamily "ERVL"; repLeft "677"; repStart "-4450"; chr4 rmsk exon 34695650 34695743 16282 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "676"; repFamily "ERVL"; repLeft "602"; repStart "-5081"; chr4 rmsk exon 34696164 34696364 16282 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "416"; repStart "-5156"; chr4 rmsk exon 34696588 34696860 16282 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "119"; repStart "-5342"; chr4 rmsk exon 34696984 34697148 423 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "350"; repStart "-8"; chr4 rmsk exon 34697172 34697380 1170 - . gene_id "ERVL_4p15.1c"; transcript_id "ERVL_4p15.1c"; locus "ERVL_4p15.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0097"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "1"; repStart "-310"; ### HERVH_4p15.1b ### chr4 rmsk gene 35017731 35019171 . + . gene_id "HERVH_4p15.1b"; transcript_id "HERVH_4p15.1b"; locus "HERVH_4p15.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0366"; model_cov "810"; model_pct "10.5"; chr4 rmsk exon 35017731 35018060 2056 + . gene_id "HERVH_4p15.1b"; transcript_id "HERVH_4p15.1b"; locus "HERVH_4p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0366"; repClass "LTR"; repEnd "2930"; repFamily "ERV1"; repLeft "-4783"; repStart "2604"; chr4 rmsk exon 35018258 35018735 2941 + . gene_id "HERVH_4p15.1b"; transcript_id "HERVH_4p15.1b"; locus "HERVH_4p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0366"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7229"; chr4 rmsk exon 35018736 35019171 3348 + . gene_id "HERVH_4p15.1b"; transcript_id "HERVH_4p15.1b"; locus "HERVH_4p15.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0366"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_4p15.1c ### chr4 rmsk gene 35019173 35022255 . - . gene_id "HERVH_4p15.1c"; transcript_id "HERVH_4p15.1c"; locus "HERVH_4p15.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0368"; model_cov "2571"; model_pct "33.3"; chr4 rmsk exon 35019173 35021341 11913 - . gene_id "HERVH_4p15.1c"; transcript_id "HERVH_4p15.1c"; locus "HERVH_4p15.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0368"; repClass "LTR"; repEnd "2930"; repFamily "ERV1"; repLeft "793"; repStart "-4783"; chr4 rmsk exon 35021417 35021811 1096 - . gene_id "HERVH_4p15.1c"; transcript_id "HERVH_4p15.1c"; locus "HERVH_4p15.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0368"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "12"; repStart "-7267"; chr4 rmsk exon 35021824 35022255 3214 - . gene_id "HERVH_4p15.1c"; transcript_id "HERVH_4p15.1c"; locus "HERVH_4p15.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0368"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVEA_4p15.1 ### chr4 rmsk gene 35100510 35109260 . + . gene_id "HERVEA_4p15.1"; transcript_id "HERVEA_4p15.1"; locus "HERVEA_4p15.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0029"; model_cov "7846"; model_pct "100.0"; chr4 rmsk exon 35100510 35101010 2860 + . gene_id "HERVEA_4p15.1"; transcript_id "HERVEA_4p15.1"; locus "HERVEA_4p15.1"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0029"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 35101011 35108768 52193 + . gene_id "HERVEA_4p15.1"; transcript_id "HERVEA_4p15.1"; locus "HERVEA_4p15.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0029"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 35108769 35109260 2703 + . gene_id "HERVEA_4p15.1"; transcript_id "HERVEA_4p15.1"; locus "HERVEA_4p15.1"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0029"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_4p15.1 ### chr4 rmsk gene 35139738 35145211 . + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0056"; model_cov "4465"; model_pct "74.2"; chr4 rmsk exon 35139738 35140255 3988 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 35140256 35140657 20609 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "417"; repFamily "ERVK"; repLeft "-5604"; repStart "1"; chr4 rmsk exon 35140739 35143030 20609 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "418"; chr4 rmsk exon 35143031 35143261 1744 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr4 rmsk exon 35143248 35144693 11150 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chr4 rmsk exon 35144694 35145211 4058 + . gene_id "HML3_4p15.1"; transcript_id "HML3_4p15.1"; locus "HML3_4p15.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0056"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVL_4p15.1d ### chr4 rmsk gene 35203782 35209480 . + . gene_id "ERVL_4p15.1d"; transcript_id "ERVL_4p15.1d"; locus "ERVL_4p15.1d"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0098"; model_cov "5735"; model_pct "99.6"; chr4 rmsk exon 35203782 35209480 30405 + . gene_id "ERVL_4p15.1d"; transcript_id "ERVL_4p15.1d"; locus "ERVL_4p15.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0098"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "22"; ### ERVLB4_4p15.1e ### chr4 rmsk gene 35252787 35254223 . - . gene_id "ERVLB4_4p15.1e"; transcript_id "ERVLB4_4p15.1e"; locus "ERVLB4_4p15.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0426"; model_cov "1519"; model_pct "26.6"; chr4 rmsk exon 35252787 35254223 6657 - . gene_id "ERVLB4_4p15.1e"; transcript_id "ERVLB4_4p15.1e"; locus "ERVLB4_4p15.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0426"; repClass "LTR"; repEnd "5320"; repFamily "ERVL"; repLeft "3801"; repStart "-394"; ### ERVLB4_4p15.1f ### chr4 rmsk gene 35316011 35318898 . + . gene_id "ERVLB4_4p15.1f"; transcript_id "ERVLB4_4p15.1f"; locus "ERVLB4_4p15.1f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0427"; model_cov "2395"; model_pct "41.9"; chr4 rmsk exon 35316011 35318286 11552 + . gene_id "ERVLB4_4p15.1f"; transcript_id "ERVLB4_4p15.1f"; locus "ERVLB4_4p15.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0427"; repClass "LTR"; repEnd "5676"; repFamily "ERVL"; repLeft "-38"; repStart "3414"; chr4 rmsk exon 35318272 35318361 364 + . gene_id "ERVLB4_4p15.1f"; transcript_id "ERVLB4_4p15.1f"; locus "ERVLB4_4p15.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0427"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5581"; chr4 rmsk exon 35318362 35318816 1091 + . gene_id "ERVLB4_4p15.1f"; transcript_id "ERVLB4_4p15.1f"; locus "ERVLB4_4p15.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0427"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "-51"; repStart "1"; chr4 rmsk exon 35318856 35318898 1091 + . gene_id "ERVLB4_4p15.1f"; transcript_id "ERVLB4_4p15.1f"; locus "ERVLB4_4p15.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0427"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "506"; ### HERVL_4p15.1f ### chr4 rmsk gene 35338847 35345600 . + . gene_id "HERVL_4p15.1f"; transcript_id "HERVL_4p15.1f"; locus "HERVL_4p15.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0356"; model_cov "5661"; model_pct "100.0"; chr4 rmsk exon 35338847 35339245 2825 + . gene_id "HERVL_4p15.1f"; transcript_id "HERVL_4p15.1f"; locus "HERVL_4p15.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0356"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr4 rmsk exon 35339405 35344354 35269 + . gene_id "HERVL_4p15.1f"; transcript_id "HERVL_4p15.1f"; locus "HERVL_4p15.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0356"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "-717"; repStart "1"; chr4 rmsk exon 35344434 35345165 5365 + . gene_id "HERVL_4p15.1f"; transcript_id "HERVL_4p15.1f"; locus "HERVL_4p15.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0356"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4929"; chr4 rmsk exon 35345166 35345600 3037 + . gene_id "HERVL_4p15.1f"; transcript_id "HERVL_4p15.1f"; locus "HERVL_4p15.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0356"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_4p15.1o ### chr4 rmsk gene 35619452 35623131 . + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0670"; model_cov "1376"; model_pct "26.3"; chr4 rmsk exon 35619452 35619699 757 + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0670"; repClass "LTR"; repEnd "3114"; repFamily "ERVL"; repLeft "-2112"; repStart "2875"; chr4 rmsk exon 35620006 35620326 757 + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0670"; repClass "LTR"; repEnd "3439"; repFamily "ERVL"; repLeft "-1787"; repStart "3115"; chr4 rmsk exon 35621283 35621419 366 + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0670"; repClass "LTR"; repEnd "4074"; repFamily "ERVL"; repLeft "-1152"; repStart "3941"; chr4 rmsk exon 35622086 35622363 1347 + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0670"; repClass "LTR"; repEnd "4352"; repFamily "ERVL"; repLeft "-874"; repStart "4080"; chr4 rmsk exon 35622711 35623131 1347 + . gene_id "ERV316A3_4p15.1o"; transcript_id "ERV316A3_4p15.1o"; locus "ERV316A3_4p15.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0670"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "-465"; repStart "4353"; ### HERV9_4p14 ### chr4 rmsk gene 35858930 35865009 . - . gene_id "HERV9_4p14"; transcript_id "HERV9_4p14"; locus "HERV9_4p14"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0041"; model_cov "5263"; model_pct "62.4"; chr4 rmsk exon 35858930 35859459 3661 - . gene_id "HERV9_4p14"; transcript_id "HERV9_4p14"; locus "HERV9_4p14"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0041"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 35859460 35859907 3595 - . gene_id "HERV9_4p14"; transcript_id "HERV9_4p14"; locus "HERV9_4p14"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0041"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7989"; repStart "0"; chr4 rmsk exon 35859902 35864558 28500 - . gene_id "HERV9_4p14"; transcript_id "HERV9_4p14"; locus "HERV9_4p14"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0041"; repClass "LTR"; repEnd "4847"; repFamily "ERV1"; repLeft "31"; repStart "-3589"; chr4 rmsk exon 35864581 35865009 2732 - . gene_id "HERV9_4p14"; transcript_id "HERV9_4p14"; locus "HERV9_4p14"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0041"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4p14a ### chr4 rmsk gene 36408703 36409816 . + . gene_id "ERVLE_4p14a"; transcript_id "ERVLE_4p14a"; locus "ERVLE_4p14a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0945"; model_cov "761"; model_pct "13.4"; chr4 rmsk exon 36408703 36408881 2370 + . gene_id "ERVLE_4p14a"; transcript_id "ERVLE_4p14a"; locus "ERVLE_4p14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0945"; repClass "LTR"; repEnd "142"; repFamily "ERVL"; repLeft "-5525"; repStart "-23"; chr4 rmsk exon 36409209 36409816 2370 + . gene_id "ERVLE_4p14a"; transcript_id "ERVLE_4p14a"; locus "ERVLE_4p14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0945"; repClass "LTR"; repEnd "757"; repFamily "ERVL"; repLeft "-4910"; repStart "161"; ### HERVW_4p14 ### chr4 rmsk gene 36440530 36443994 . - . gene_id "HERVW_4p14"; transcript_id "HERVW_4p14"; locus "HERVW_4p14"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0089"; model_cov "3127"; model_pct "36.3"; chr4 rmsk exon 36440530 36440860 2144 - . gene_id "HERVW_4p14"; transcript_id "HERVW_4p14"; locus "HERVW_4p14"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0089"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr4 rmsk exon 36440861 36441152 2190 - . gene_id "HERVW_4p14"; transcript_id "HERVW_4p14"; locus "HERVW_4p14"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0089"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 36441143 36441181 309 - . gene_id "HERVW_4p14"; transcript_id "HERVW_4p14"; locus "HERVW_4p14"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0089"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr4 rmsk exon 36441178 36443994 22776 - . gene_id "HERVW_4p14"; transcript_id "HERVW_4p14"; locus "HERVW_4p14"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0089"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "4349"; repStart "-1479"; ### HERVL_4p14a ### chr4 rmsk gene 36611545 36614500 . + . gene_id "HERVL_4p14a"; transcript_id "HERVL_4p14a"; locus "HERVL_4p14a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0357"; model_cov "2136"; model_pct "37.8"; chr4 rmsk exon 36611545 36612006 2675 + . gene_id "HERVL_4p14a"; transcript_id "HERVL_4p14a"; locus "HERVL_4p14a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0357"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 36612007 36613409 10498 + . gene_id "HERVL_4p14a"; transcript_id "HERVL_4p14a"; locus "HERVL_4p14a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0357"; repClass "LTR"; repEnd "1421"; repFamily "ERVL"; repLeft "-4233"; repStart "1"; chr4 rmsk exon 36613407 36614124 5664 + . gene_id "HERVL_4p14a"; transcript_id "HERVL_4p14a"; locus "HERVL_4p14a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0357"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4938"; chr4 rmsk exon 36614127 36614500 2260 + . gene_id "HERVL_4p14a"; transcript_id "HERVL_4p14a"; locus "HERVL_4p14a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0357"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "3"; ### HERVL_4p14b ### chr4 rmsk gene 36714492 36720966 . - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0358"; model_cov "5572"; model_pct "98.5"; chr4 rmsk exon 36714492 36714868 2714 - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0358"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "3"; repStart "-59"; chr4 rmsk exon 36714869 36715015 723 - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0358"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5507"; repStart "0"; chr4 rmsk exon 36715039 36720438 24484 - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0358"; repClass "LTR"; repEnd "5413"; repFamily "ERVL"; repLeft "-12"; repStart "-241"; chr4 rmsk exon 36720439 36720493 394 - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0358"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr4 rmsk exon 36720691 36720966 1490 - . gene_id "HERVL_4p14b"; transcript_id "HERVL_4p14b"; locus "HERVL_4p14b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0358"; repClass "LTR"; repEnd "249"; repFamily "ERVL"; repLeft "-8"; repStart "-195"; ### HUERSP3B_4p14 ### chr4 rmsk gene 36893878 36900976 . + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0040"; model_cov "5652"; model_pct "76.2"; chr4 rmsk exon 36893878 36894035 908 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "485"; chr4 rmsk exon 36894036 36894132 379 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "1"; chr4 rmsk exon 36894137 36894261 697 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "532"; repFamily "ERV1"; repLeft "-6886"; repStart "410"; chr4 rmsk exon 36894567 36894596 697 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "533"; chr4 rmsk exon 36894897 36896654 6846 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-4760"; repStart "747"; chr4 rmsk exon 36897030 36897862 5533 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chr4 rmsk exon 36897855 36900370 9560 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "4714"; chr4 rmsk exon 36900372 36900976 2708 + . gene_id "HUERSP3B_4p14"; transcript_id "HUERSP3B_4p14"; locus "HUERSP3B_4p14"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0040"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-91"; repStart "-21"; ### HARLEQUIN_4p14a ### chr4 rmsk gene 36906915 36913355 . + . gene_id "HARLEQUIN_4p14a"; transcript_id "HARLEQUIN_4p14a"; locus "HARLEQUIN_4p14a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0054"; model_cov "5998"; model_pct "87.0"; chr4 rmsk exon 36906915 36908066 8526 + . gene_id "HARLEQUIN_4p14a"; transcript_id "HARLEQUIN_4p14a"; locus "HARLEQUIN_4p14a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0054"; repClass "LTR"; repEnd "1419"; repFamily "ERV1"; repLeft "-5477"; repStart "263"; chr4 rmsk exon 36908061 36912893 37254 + . gene_id "HARLEQUIN_4p14a"; transcript_id "HARLEQUIN_4p14a"; locus "HARLEQUIN_4p14a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0054"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2054"; chr4 rmsk exon 36912894 36913355 3637 + . gene_id "HARLEQUIN_4p14a"; transcript_id "HARLEQUIN_4p14a"; locus "HARLEQUIN_4p14a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0054"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4p14b ### chr4 rmsk gene 37188227 37189843 . + . gene_id "ERVLE_4p14b"; transcript_id "ERVLE_4p14b"; locus "ERVLE_4p14b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0947"; model_cov "1299"; model_pct "22.9"; chr4 rmsk exon 37188227 37188308 3484 + . gene_id "ERVLE_4p14b"; transcript_id "ERVLE_4p14b"; locus "ERVLE_4p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0947"; repClass "LTR"; repEnd "3568"; repFamily "ERVL"; repLeft "-2099"; repStart "3492"; chr4 rmsk exon 37188615 37189403 3484 + . gene_id "ERVLE_4p14b"; transcript_id "ERVLE_4p14b"; locus "ERVLE_4p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0947"; repClass "LTR"; repEnd "4375"; repFamily "ERVL"; repLeft "-1292"; repStart "3569"; chr4 rmsk exon 37189408 37189843 1180 + . gene_id "ERVLE_4p14b"; transcript_id "ERVLE_4p14b"; locus "ERVLE_4p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0947"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "-395"; repStart "4855"; ### HARLEQUIN_4p14b ### chr4 rmsk gene 37546189 37552466 . + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0055"; model_cov "4903"; model_pct "71.1"; chr4 rmsk exon 37546189 37546669 3878 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 37547156 37547779 4803 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "263"; chr4 rmsk exon 37547765 37548768 7191 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr4 rmsk exon 37548759 37549353 4691 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "3954"; repFamily "ERV1"; repLeft "-2942"; repStart "3342"; chr4 rmsk exon 37549339 37550447 16604 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "5384"; repFamily "ERV1"; repLeft "-1512"; repStart "4246"; chr4 rmsk exon 37550517 37551985 16604 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5385"; chr4 rmsk exon 37551986 37552466 4003 + . gene_id "HARLEQUIN_4p14b"; transcript_id "HARLEQUIN_4p14b"; locus "HARLEQUIN_4p14b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0055"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4p14c ### chr4 rmsk gene 38602647 38604070 . + . gene_id "ERVLE_4p14c"; transcript_id "ERVLE_4p14c"; locus "ERVLE_4p14c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0948"; model_cov "842"; model_pct "14.9"; chr4 rmsk exon 38602647 38602965 363 + . gene_id "ERVLE_4p14c"; transcript_id "ERVLE_4p14c"; locus "ERVLE_4p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0948"; repClass "LTR"; repEnd "1354"; repFamily "ERVL"; repLeft "-4313"; repStart "1077"; chr4 rmsk exon 38603077 38603150 262 + . gene_id "ERVLE_4p14c"; transcript_id "ERVLE_4p14c"; locus "ERVLE_4p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0948"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "-4051"; repStart "1543"; chr4 rmsk exon 38603262 38603346 1464 + . gene_id "ERVLE_4p14c"; transcript_id "ERVLE_4p14c"; locus "ERVLE_4p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0948"; repClass "LTR"; repEnd "2861"; repFamily "ERVL"; repLeft "-2806"; repStart "2777"; chr4 rmsk exon 38603669 38604070 1464 + . gene_id "ERVLE_4p14c"; transcript_id "ERVLE_4p14c"; locus "ERVLE_4p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0948"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-2397"; repStart "2862"; ### HERV3_4p14 ### chr4 rmsk gene 39484642 39490389 . + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0014"; model_cov "4564"; model_pct "54.2"; chr4 rmsk exon 39484642 39485142 1048 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr4 rmsk exon 39485143 39485509 2145 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "-8052"; repStart "2"; chr4 rmsk exon 39485529 39485619 587 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "-7442"; repStart "894"; chr4 rmsk exon 39485608 39487232 10662 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "2957"; repFamily "ERV1"; repLeft "-5469"; repStart "1332"; chr4 rmsk exon 39487223 39487506 11972 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "4530"; repFamily "ERV1"; repLeft "-3896"; repStart "4258"; chr4 rmsk exon 39487800 39489434 11972 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "6221"; repFamily "ERV1"; repLeft "-2205"; repStart "4531"; chr4 rmsk exon 39489733 39489931 1010 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "6580"; repFamily "ERV1"; repLeft "-1846"; repStart "6381"; chr4 rmsk exon 39489931 39490236 1534 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "8110"; chr4 rmsk exon 39490237 39490389 580 + . gene_id "HERV3_4p14"; transcript_id "HERV3_4p14"; locus "HERV3_4p14"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0014"; repClass "LTR"; repEnd "24"; repFamily "ERV1"; repLeft "-535"; repStart "-115"; ### HML6_4p14 ### chr4 rmsk gene 39539256 39544368 . - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0016"; model_cov "4315"; model_pct "59.9"; chr4 rmsk exon 39539256 39539681 2637 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "1"; repStart "-6"; chr4 rmsk exon 39539684 39541527 9167 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "5343"; repStart "-2"; chr4 rmsk exon 39541529 39542764 7890 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "5148"; repFamily "ERVK"; repLeft "3909"; repStart "-2054"; chr4 rmsk exon 39542763 39543761 6366 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "1445"; repFamily "ERVK"; repLeft "430"; repStart "-5757"; chr4 rmsk exon 39543750 39543921 721 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "28"; repStart "-6970"; chr4 rmsk exon 39543949 39544368 2528 - . gene_id "HML6_4p14"; transcript_id "HML6_4p14"; locus "HML6_4p14"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0016"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "1"; repStart "-6"; ### ERVLE_4p14d ### chr4 rmsk gene 39952513 39953383 . + . gene_id "ERVLE_4p14d"; transcript_id "ERVLE_4p14d"; locus "ERVLE_4p14d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0949"; model_cov "568"; model_pct "10.0"; chr4 rmsk exon 39952513 39952725 1386 + . gene_id "ERVLE_4p14d"; transcript_id "ERVLE_4p14d"; locus "ERVLE_4p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0949"; repClass "LTR"; repEnd "4667"; repFamily "ERVL"; repLeft "-1000"; repStart "4454"; chr4 rmsk exon 39953024 39953383 1386 + . gene_id "ERVLE_4p14d"; transcript_id "ERVLE_4p14d"; locus "ERVLE_4p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0949"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-644"; repStart "4668"; ### ERV316A3_4p13a ### chr4 rmsk gene 41829175 41834569 . + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0673"; model_cov "2946"; model_pct "56.4"; chr4 rmsk exon 41829175 41829610 1640 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 41829622 41829757 2432 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-4856"; repStart "232"; chr4 rmsk exon 41829995 41831018 2432 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "1399"; repFamily "ERVL"; repLeft "-3827"; repStart "371"; chr4 rmsk exon 41831376 41832777 3109 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "2739"; repFamily "ERVL"; repLeft "-2487"; repStart "1305"; chr4 rmsk exon 41832971 41833224 939 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "2996"; repFamily "ERVL"; repLeft "-2230"; repStart "2733"; chr4 rmsk exon 41833767 41833854 939 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2146"; repStart "2997"; chr4 rmsk exon 41834408 41834569 424 + . gene_id "ERV316A3_4p13a"; transcript_id "ERV316A3_4p13a"; locus "ERV316A3_4p13a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0673"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "283"; ### HERVW_4p13 ### chr4 rmsk gene 42285438 42292896 . - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0091"; model_cov "6116"; model_pct "70.9"; chr4 rmsk exon 42285438 42286149 5746 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "708"; repFamily "ERV1"; repLeft "1"; repStart "-72"; chr4 rmsk exon 42286150 42286439 2198 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 42286430 42286468 306 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr4 rmsk exon 42286462 42289999 30013 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr4 rmsk exon 42289985 42290320 2770 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1679"; repStart "-6612"; chr4 rmsk exon 42290318 42292137 8735 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "1"; repStart "-6762"; chr4 rmsk exon 42292138 42292896 5788 - . gene_id "HERVW_4p13"; transcript_id "HERVW_4p13"; locus "HERVW_4p13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0091"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_4p13 ### chr4 rmsk gene 42313411 42320610 . + . gene_id "HERVIP10FH_4p13"; transcript_id "HERVIP10FH_4p13"; locus "HERVIP10FH_4p13"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0049"; model_cov "4971"; model_pct "97.4"; chr4 rmsk exon 42313411 42313975 3396 + . gene_id "HERVIP10FH_4p13"; transcript_id "HERVIP10FH_4p13"; locus "HERVIP10FH_4p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0049"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 42313976 42314512 1975 + . gene_id "HERVIP10FH_4p13"; transcript_id "HERVIP10FH_4p13"; locus "HERVIP10FH_4p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0049"; repClass "LTR"; repEnd "-2184"; repFamily "ERV1"; repLeft "-7286"; repStart "-2682"; chr4 rmsk exon 42315690 42320148 35490 + . gene_id "HERVIP10FH_4p13"; transcript_id "HERVIP10FH_4p13"; locus "HERVIP10FH_4p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0049"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "-5"; repStart "624"; chr4 rmsk exon 42320154 42320610 3069 + . gene_id "HERVIP10FH_4p13"; transcript_id "HERVIP10FH_4p13"; locus "HERVIP10FH_4p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0049"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "-26"; repStart "1"; ### HERVL_4p13a ### chr4 rmsk gene 42526339 42531440 . + . gene_id "HERVL_4p13a"; transcript_id "HERVL_4p13a"; locus "HERVL_4p13a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0359"; model_cov "4684"; model_pct "82.8"; chr4 rmsk exon 42526339 42526768 3210 + . gene_id "HERVL_4p13a"; transcript_id "HERVL_4p13a"; locus "HERVL_4p13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0359"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 42526769 42527743 7265 + . gene_id "HERVL_4p13a"; transcript_id "HERVL_4p13a"; locus "HERVL_4p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0359"; repClass "LTR"; repEnd "983"; repFamily "ERVL"; repLeft "-4671"; repStart "1"; chr4 rmsk exon 42527723 42531440 27180 + . gene_id "HERVL_4p13a"; transcript_id "HERVL_4p13a"; locus "HERVL_4p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0359"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "-293"; repStart "1659"; ### MER41_4p13 ### chr4 rmsk gene 42675981 42676710 . + . gene_id "MER41_4p13"; transcript_id "MER41_4p13"; locus "MER41_4p13"; category "internal"; intModel "MER41-int"; locid "MER41-int_0117"; model_cov "792"; model_pct "13.3"; chr4 rmsk exon 42675981 42676529 3610 + . gene_id "MER41_4p13"; transcript_id "MER41_4p13"; locus "MER41_4p13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0117"; repClass "LTR"; repEnd "872"; repFamily "ERV1"; repLeft "-5074"; repStart "288"; chr4 rmsk exon 42676503 42676710 1391 + . gene_id "MER41_4p13"; transcript_id "MER41_4p13"; locus "MER41_4p13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0117"; repClass "LTR"; repEnd "167"; repFamily "ERV1"; repLeft "-5779"; repStart "-41"; ### ERV316A3_4p13b ### chr4 rmsk gene 42906969 42908608 . - . gene_id "ERV316A3_4p13b"; transcript_id "ERV316A3_4p13b"; locus "ERV316A3_4p13b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0675"; model_cov "1073"; model_pct "20.5"; chr4 rmsk exon 42906969 42907165 605 - . gene_id "ERV316A3_4p13b"; transcript_id "ERV316A3_4p13b"; locus "ERV316A3_4p13b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0675"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "250"; repStart "-1"; chr4 rmsk exon 42907197 42907268 253 - . gene_id "ERV316A3_4p13b"; transcript_id "ERV316A3_4p13b"; locus "ERV316A3_4p13b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0675"; repClass "LTR"; repEnd "99"; repFamily "ERVL"; repLeft "26"; repStart "-357"; chr4 rmsk exon 42907364 42908146 1466 - . gene_id "ERV316A3_4p13b"; transcript_id "ERV316A3_4p13b"; locus "ERV316A3_4p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0675"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "4334"; repStart "-106"; chr4 rmsk exon 42908324 42908608 509 - . gene_id "ERV316A3_4p13b"; transcript_id "ERV316A3_4p13b"; locus "ERV316A3_4p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0675"; repClass "LTR"; repEnd "2828"; repFamily "ERVL"; repLeft "2541"; repStart "-2398"; ### ERVLE_4p13a ### chr4 rmsk gene 43040801 43041456 . + . gene_id "ERVLE_4p13a"; transcript_id "ERVLE_4p13a"; locus "ERVLE_4p13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0951"; model_cov "683"; model_pct "12.1"; chr4 rmsk exon 43040801 43041456 1310 + . gene_id "ERVLE_4p13a"; transcript_id "ERVLE_4p13a"; locus "ERVLE_4p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0951"; repClass "LTR"; repEnd "5290"; repFamily "ERVL"; repLeft "-377"; repStart "4607"; ### HERVI_4p13 ### chr4 rmsk gene 43072389 43075237 . + . gene_id "HERVI_4p13"; transcript_id "HERVI_4p13"; locus "HERVI_4p13"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0008"; model_cov "2292"; model_pct "29.4"; chr4 rmsk exon 43072389 43074698 14363 + . gene_id "HERVI_4p13"; transcript_id "HERVI_4p13"; locus "HERVI_4p13"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0008"; repClass "LTR"; repEnd "7758"; repFamily "ERV1"; repLeft "-27"; repStart "5466"; chr4 rmsk exon 43074728 43075237 3679 + . gene_id "HERVI_4p13"; transcript_id "HERVI_4p13"; locus "HERVI_4p13"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0008"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4p13 ### chr4 rmsk gene 43075795 43082928 . - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0203"; model_cov "5484"; model_pct "83.1"; chr4 rmsk exon 43075795 43076258 3168 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0203"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 43076266 43078427 15411 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "4388"; repStart "-1"; chr4 rmsk exon 43078709 43079547 15411 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "4387"; repFamily "ERV1"; repLeft "2949"; repStart "-2211"; chr4 rmsk exon 43079854 43080080 2591 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "2948"; repFamily "ERV1"; repLeft "2737"; repStart "-3650"; chr4 rmsk exon 43080315 43081027 3964 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1771"; repStart "-4103"; chr4 rmsk exon 43081026 43081391 1495 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "981"; repStart "-5314"; chr4 rmsk exon 43081360 43081845 2799 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "76"; repStart "-5997"; chr4 rmsk exon 43082625 43082698 2799 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0203"; repClass "LTR"; repEnd "75"; repFamily "ERV1"; repLeft "1"; repStart "-6523"; chr4 rmsk exon 43082702 43082928 1545 - . gene_id "MER4_4p13"; transcript_id "MER4_4p13"; locus "MER4_4p13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0203"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "238"; repStart "0"; ### HERVL_4p13b ### chr4 rmsk gene 43445338 43450696 . - . gene_id "HERVL_4p13b"; transcript_id "HERVL_4p13b"; locus "HERVL_4p13b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0360"; model_cov "4571"; model_pct "80.8"; chr4 rmsk exon 43445338 43445395 2971 - . gene_id "HERVL_4p13b"; transcript_id "HERVL_4p13b"; locus "HERVL_4p13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0360"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chr4 rmsk exon 43445446 43445831 2971 - . gene_id "HERVL_4p13b"; transcript_id "HERVL_4p13b"; locus "HERVL_4p13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0360"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "2"; repStart "-59"; chr4 rmsk exon 43445832 43450201 34677 - . gene_id "HERVL_4p13b"; transcript_id "HERVL_4p13b"; locus "HERVL_4p13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0360"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1250"; repStart "0"; chr4 rmsk exon 43450538 43450696 34677 - . gene_id "HERVL_4p13b"; transcript_id "HERVL_4p13b"; locus "HERVL_4p13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0360"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "1082"; repStart "-4405"; ### HML1_4p13 ### chr4 rmsk gene 43468818 43472828 . + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0022"; model_cov "3128"; model_pct "51.3"; chr4 rmsk exon 43468818 43469191 2179 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 43469192 43469838 4840 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "643"; repFamily "ERVK"; repLeft "-5453"; repStart "1"; chr4 rmsk exon 43469819 43470003 1431 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "1552"; repFamily "ERVK"; repLeft "-4544"; repStart "1365"; chr4 rmsk exon 43470007 43471953 15258 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "3974"; chr4 rmsk exon 43472016 43472070 446 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5960"; chr4 rmsk exon 43472123 43472444 801 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "6071"; repFamily "ERVK"; repLeft "-25"; repStart "5749"; chr4 rmsk exon 43472457 43472828 2316 + . gene_id "HML1_4p13"; transcript_id "HML1_4p13"; locus "HML1_4p13"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0022"; repClass "LTR"; repEnd "342"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### ERVLE_4p13b ### chr4 rmsk gene 43517758 43518523 . - . gene_id "ERVLE_4p13b"; transcript_id "ERVLE_4p13b"; locus "ERVLE_4p13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0952"; model_cov "708"; model_pct "12.5"; chr4 rmsk exon 43517758 43518133 1048 - . gene_id "ERVLE_4p13b"; transcript_id "ERVLE_4p13b"; locus "ERVLE_4p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0952"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5305"; repStart "0"; chr4 rmsk exon 43518192 43518523 1170 - . gene_id "ERVLE_4p13b"; transcript_id "ERVLE_4p13b"; locus "ERVLE_4p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0952"; repClass "LTR"; repEnd "5305"; repFamily "ERVL"; repLeft "4959"; repStart "-362"; ### HERVL_4p13c ### chr4 rmsk gene 43590737 43592107 . - . gene_id "HERVL_4p13c"; transcript_id "HERVL_4p13c"; locus "HERVL_4p13c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0361"; model_cov "935"; model_pct "16.5"; chr4 rmsk exon 43590737 43590894 339 - . gene_id "HERVL_4p13c"; transcript_id "HERVL_4p13c"; locus "HERVL_4p13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0361"; repClass "LTR"; repEnd "4132"; repFamily "ERVL"; repLeft "3971"; repStart "-1522"; chr4 rmsk exon 43591080 43591331 351 - . gene_id "HERVL_4p13c"; transcript_id "HERVL_4p13c"; locus "HERVL_4p13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0361"; repClass "LTR"; repEnd "3472"; repFamily "ERVL"; repLeft "3209"; repStart "-2182"; chr4 rmsk exon 43591621 43592107 387 - . gene_id "HERVL_4p13c"; transcript_id "HERVL_4p13c"; locus "HERVL_4p13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0361"; repClass "LTR"; repEnd "3107"; repFamily "ERVL"; repLeft "2596"; repStart "-2547"; ### ERVLE_4p13c ### chr4 rmsk gene 43868376 43869788 . - . gene_id "ERVLE_4p13c"; transcript_id "ERVLE_4p13c"; locus "ERVLE_4p13c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0953"; model_cov "667"; model_pct "11.8"; chr4 rmsk exon 43868376 43869057 1250 - . gene_id "ERVLE_4p13c"; transcript_id "ERVLE_4p13c"; locus "ERVLE_4p13c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0953"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr4 rmsk exon 43869058 43869127 294 - . gene_id "ERVLE_4p13c"; transcript_id "ERVLE_4p13c"; locus "ERVLE_4p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0953"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5597"; repStart "0"; chr4 rmsk exon 43869229 43869788 1847 - . gene_id "ERVLE_4p13c"; transcript_id "ERVLE_4p13c"; locus "ERVLE_4p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0953"; repClass "LTR"; repEnd "5127"; repFamily "ERVL"; repLeft "4530"; repStart "-540"; ### HUERSP2_4p13 ### chr4 rmsk gene 43902962 43907555 . + . gene_id "HUERSP2_4p13"; transcript_id "HUERSP2_4p13"; locus "HUERSP2_4p13"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0039"; model_cov "3001"; model_pct "97.2"; chr4 rmsk exon 43902962 43903755 4872 + . gene_id "HUERSP2_4p13"; transcript_id "HUERSP2_4p13"; locus "HUERSP2_4p13"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0039"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "-14"; repStart "44"; chr4 rmsk exon 43903774 43903904 466 + . gene_id "HUERSP2_4p13"; transcript_id "HUERSP2_4p13"; locus "HUERSP2_4p13"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0039"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "1"; chr4 rmsk exon 43903925 43906748 16730 + . gene_id "HUERSP2_4p13"; transcript_id "HUERSP2_4p13"; locus "HUERSP2_4p13"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0039"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "-3"; repStart "210"; chr4 rmsk exon 43906749 43907555 5017 + . gene_id "HUERSP2_4p13"; transcript_id "HUERSP2_4p13"; locus "HUERSP2_4p13"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0039"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "41"; ### ERVLE_4p13d ### chr4 rmsk gene 44037167 44038691 . + . gene_id "ERVLE_4p13d"; transcript_id "ERVLE_4p13d"; locus "ERVLE_4p13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0955"; model_cov "1351"; model_pct "23.8"; chr4 rmsk exon 44037167 44038258 1015 + . gene_id "ERVLE_4p13d"; transcript_id "ERVLE_4p13d"; locus "ERVLE_4p13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0955"; repClass "LTR"; repEnd "1817"; repFamily "ERVL"; repLeft "-3850"; repStart "737"; chr4 rmsk exon 44038432 44038691 966 + . gene_id "ERVLE_4p13d"; transcript_id "ERVLE_4p13d"; locus "ERVLE_4p13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0955"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "-3244"; repStart "2152"; ### HERVL18_4p13 ### chr4 rmsk gene 44485460 44487778 . + . gene_id "HERVL18_4p13"; transcript_id "HERVL18_4p13"; locus "HERVL18_4p13"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0041"; model_cov "1759"; model_pct "29.1"; chr4 rmsk exon 44485460 44485769 1326 + . gene_id "HERVL18_4p13"; transcript_id "HERVL18_4p13"; locus "HERVL18_4p13"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0041"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 44485777 44487240 7414 + . gene_id "HERVL18_4p13"; transcript_id "HERVL18_4p13"; locus "HERVL18_4p13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0041"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "-4509"; repStart "2"; chr4 rmsk exon 44487216 44487439 1529 + . gene_id "HERVL18_4p13"; transcript_id "HERVL18_4p13"; locus "HERVL18_4p13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0041"; repClass "LTR"; repEnd "5908"; repFamily "ERVL"; repLeft "-139"; repStart "5685"; chr4 rmsk exon 44487460 44487778 1336 + . gene_id "HERVL18_4p13"; transcript_id "HERVL18_4p13"; locus "HERVL18_4p13"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0041"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFRD_4p12a ### chr4 rmsk gene 44771629 44778461 . + . gene_id "HERVFRD_4p12a"; transcript_id "HERVFRD_4p12a"; locus "HERVFRD_4p12a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0055"; model_cov "6637"; model_pct "92.1"; chr4 rmsk exon 44771629 44772334 4121 + . gene_id "HERVFRD_4p12a"; transcript_id "HERVFRD_4p12a"; locus "HERVFRD_4p12a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0055"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr4 rmsk exon 44772335 44774047 6258 + . gene_id "HERVFRD_4p12a"; transcript_id "HERVFRD_4p12a"; locus "HERVFRD_4p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0055"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "7"; chr4 rmsk exon 44774041 44777754 11476 + . gene_id "HERVFRD_4p12a"; transcript_id "HERVFRD_4p12a"; locus "HERVFRD_4p12a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0055"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "2402"; chr4 rmsk exon 44777755 44778461 3527 + . gene_id "HERVFRD_4p12a"; transcript_id "HERVFRD_4p12a"; locus "HERVFRD_4p12a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0055"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "-30"; repStart "1"; ### HML5_4p12 ### chr4 rmsk gene 44791754 44793200 . + . gene_id "HML5_4p12"; transcript_id "HML5_4p12"; locus "HML5_4p12"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0029"; model_cov "682"; model_pct "10.0"; chr4 rmsk exon 44791754 44792236 2739 + . gene_id "HML5_4p12"; transcript_id "HML5_4p12"; locus "HML5_4p12"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0029"; repClass "LTR"; repEnd "523"; repFamily "ERVK"; repLeft "-3"; repStart "1"; chr4 rmsk exon 44792250 44792571 4258 + . gene_id "HML5_4p12"; transcript_id "HML5_4p12"; locus "HML5_4p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0029"; repClass "LTR"; repEnd "340"; repFamily "ERVK"; repLeft "-6497"; repStart "3"; chr4 rmsk exon 44792853 44793200 4258 + . gene_id "HML5_4p12"; transcript_id "HML5_4p12"; locus "HML5_4p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0029"; repClass "LTR"; repEnd "686"; repFamily "ERVK"; repLeft "-6151"; repStart "341"; ### ERV316A3_4p12a ### chr4 rmsk gene 44801902 44805620 . + . gene_id "ERV316A3_4p12a"; transcript_id "ERV316A3_4p12a"; locus "ERV316A3_4p12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0677"; model_cov "3225"; model_pct "61.7"; chr4 rmsk exon 44801902 44804662 6700 + . gene_id "ERV316A3_4p12a"; transcript_id "ERV316A3_4p12a"; locus "ERV316A3_4p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0677"; repClass "LTR"; repEnd "4852"; repFamily "ERVL"; repLeft "-374"; repStart "1973"; chr4 rmsk exon 44805026 44805345 6700 + . gene_id "ERV316A3_4p12a"; transcript_id "ERV316A3_4p12a"; locus "ERV316A3_4p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0677"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "-27"; repStart "4853"; chr4 rmsk exon 44805356 44805620 631 + . gene_id "ERV316A3_4p12a"; transcript_id "ERV316A3_4p12a"; locus "ERV316A3_4p12a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0677"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "-74"; repStart "84"; ### HARLEQUIN_4p12 ### chr4 rmsk gene 44820315 44828644 . - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0056"; model_cov "6735"; model_pct "97.7"; chr4 rmsk exon 44820315 44820778 3322 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 44820779 44823113 17216 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "4541"; repStart "0"; chr4 rmsk exon 44823103 44823203 679 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "4069"; repStart "-2728"; chr4 rmsk exon 44823199 44823534 2089 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "3644"; repStart "-2917"; chr4 rmsk exon 44823515 44824760 29032 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "2705"; repStart "-2947"; chr4 rmsk exon 44825279 44825335 29032 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "2704"; repFamily "ERV1"; repLeft "2651"; repStart "-4192"; chr4 rmsk exon 44825594 44828184 29032 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "2650"; repFamily "ERV1"; repLeft "1"; repStart "-4246"; chr4 rmsk exon 44828186 44828644 3332 - . gene_id "HARLEQUIN_4p12"; transcript_id "HARLEQUIN_4p12"; locus "HARLEQUIN_4p12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0056"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVFRD_4p12b ### chr4 rmsk gene 44986703 44996976 . + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0056"; model_cov "7730"; model_pct "100.0"; chr4 rmsk exon 44986703 44987180 3936 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0056"; repClass "LTR"; repEnd "699"; repFamily "ERV1"; repLeft "-35"; repStart "219"; chr4 rmsk exon 44987242 44987609 18591 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0056"; repClass "LTR"; repEnd "390"; repFamily "ERV1"; repLeft "-6815"; repStart "24"; chr4 rmsk exon 44987949 44991049 18591 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0056"; repClass "LTR"; repEnd "3494"; repFamily "ERV1"; repLeft "-3711"; repStart "505"; chr4 rmsk exon 44991092 44994265 2967 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0056"; repClass "LTR"; repEnd "6320"; repFamily "ERV1"; repLeft "-885"; repStart "3056"; chr4 rmsk exon 44995110 44996271 7321 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0056"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6086"; chr4 rmsk exon 44996272 44996976 3845 + . gene_id "HERVFRD_4p12b"; transcript_id "HERVFRD_4p12b"; locus "HERVFRD_4p12b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0056"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### HML3_4p12 ### chr4 rmsk gene 45042048 45049024 . + . gene_id "HML3_4p12"; transcript_id "HML3_4p12"; locus "HML3_4p12"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0057"; model_cov "6020"; model_pct "100.0"; chr4 rmsk exon 45042048 45042562 4262 + . gene_id "HML3_4p12"; transcript_id "HML3_4p12"; locus "HML3_4p12"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0057"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 45042563 45048504 45962 + . gene_id "HML3_4p12"; transcript_id "HML3_4p12"; locus "HML3_4p12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0057"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 45048505 45049024 4089 + . gene_id "HML3_4p12"; transcript_id "HML3_4p12"; locus "HML3_4p12"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0057"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_4p12a ### chr4 rmsk gene 45199103 45201397 . - . gene_id "ERVLE_4p12a"; transcript_id "ERVLE_4p12a"; locus "ERVLE_4p12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0957"; model_cov "1918"; model_pct "33.8"; chr4 rmsk exon 45199103 45199478 679 - . gene_id "ERVLE_4p12a"; transcript_id "ERVLE_4p12a"; locus "ERVLE_4p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0957"; repClass "LTR"; repEnd "5547"; repFamily "ERVL"; repLeft "5158"; repStart "-120"; chr4 rmsk exon 45199861 45200258 669 - . gene_id "ERVLE_4p12a"; transcript_id "ERVLE_4p12a"; locus "ERVLE_4p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0957"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "3810"; repStart "-1231"; chr4 rmsk exon 45200481 45200680 302 - . gene_id "ERVLE_4p12a"; transcript_id "ERVLE_4p12a"; locus "ERVLE_4p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0957"; repClass "LTR"; repEnd "3700"; repFamily "ERVL"; repLeft "3498"; repStart "-1967"; chr4 rmsk exon 45200720 45201397 1193 - . gene_id "ERVLE_4p12a"; transcript_id "ERVLE_4p12a"; locus "ERVLE_4p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0957"; repClass "LTR"; repEnd "3425"; repFamily "ERVL"; repLeft "2724"; repStart "-2242"; ### ERVLE_4p12b ### chr4 rmsk gene 45249891 45251209 . - . gene_id "ERVLE_4p12b"; transcript_id "ERVLE_4p12b"; locus "ERVLE_4p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0958"; model_cov "1313"; model_pct "23.2"; chr4 rmsk exon 45249891 45250885 709 - . gene_id "ERVLE_4p12b"; transcript_id "ERVLE_4p12b"; locus "ERVLE_4p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0958"; repClass "LTR"; repEnd "3783"; repFamily "ERVL"; repLeft "2786"; repStart "-1884"; chr4 rmsk exon 45250893 45251209 502 - . gene_id "ERVLE_4p12b"; transcript_id "ERVLE_4p12b"; locus "ERVLE_4p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0958"; repClass "LTR"; repEnd "1542"; repFamily "ERVL"; repLeft "1226"; repStart "-4125"; ### ERV316A3_4p12b ### chr4 rmsk gene 45405672 45406846 . - . gene_id "ERV316A3_4p12b"; transcript_id "ERV316A3_4p12b"; locus "ERV316A3_4p12b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0678"; model_cov "728"; model_pct "13.9"; chr4 rmsk exon 45405672 45405840 506 - . gene_id "ERV316A3_4p12b"; transcript_id "ERV316A3_4p12b"; locus "ERV316A3_4p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0678"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "3652"; repStart "-1404"; chr4 rmsk exon 45406305 45406846 476 - . gene_id "ERV316A3_4p12b"; transcript_id "ERV316A3_4p12b"; locus "ERV316A3_4p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0678"; repClass "LTR"; repEnd "3618"; repFamily "ERVL"; repLeft "3060"; repStart "-1608"; ### ERVLB4_4p12a ### chr4 rmsk gene 45411701 45416951 . + . gene_id "ERVLB4_4p12a"; transcript_id "ERVLB4_4p12a"; locus "ERVLB4_4p12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0428"; model_cov "3756"; model_pct "65.7"; chr4 rmsk exon 45411701 45412221 2235 + . gene_id "ERVLB4_4p12a"; transcript_id "ERVLB4_4p12a"; locus "ERVLB4_4p12a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0428"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-40"; repStart "-10"; chr4 rmsk exon 45412562 45414235 7422 + . gene_id "ERVLB4_4p12a"; transcript_id "ERVLB4_4p12a"; locus "ERVLB4_4p12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0428"; repClass "LTR"; repEnd "1778"; repFamily "ERVL"; repLeft "-3936"; repStart "84"; chr4 rmsk exon 45414910 45416951 11166 + . gene_id "ERVLB4_4p12a"; transcript_id "ERVLB4_4p12a"; locus "ERVLB4_4p12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0428"; repClass "LTR"; repEnd "3829"; repFamily "ERVL"; repLeft "-1885"; repStart "1767"; ### ERV316A3_4p12c ### chr4 rmsk gene 45554252 45555334 . - . gene_id "ERV316A3_4p12c"; transcript_id "ERV316A3_4p12c"; locus "ERV316A3_4p12c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0680"; model_cov "1076"; model_pct "20.6"; chr4 rmsk exon 45554252 45555334 967 - . gene_id "ERV316A3_4p12c"; transcript_id "ERV316A3_4p12c"; locus "ERV316A3_4p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0680"; repClass "LTR"; repEnd "3376"; repFamily "ERVL"; repLeft "2300"; repStart "-1850"; ### HERVH48_4p12 ### chr4 rmsk gene 45606937 45614094 . + . gene_id "HERVH48_4p12"; transcript_id "HERVH48_4p12"; locus "HERVH48_4p12"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0015"; model_cov "6480"; model_pct "97.4"; chr4 rmsk exon 45606937 45607329 2690 + . gene_id "HERVH48_4p12"; transcript_id "HERVH48_4p12"; locus "HERVH48_4p12"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0015"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 45607330 45611170 24583 + . gene_id "HERVH48_4p12"; transcript_id "HERVH48_4p12"; locus "HERVH48_4p12"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0015"; repClass "LTR"; repEnd "3896"; repFamily "ERV1"; repLeft "-2758"; repStart "1"; chr4 rmsk exon 45611160 45613711 17396 + . gene_id "HERVH48_4p12"; transcript_id "HERVH48_4p12"; locus "HERVH48_4p12"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0015"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "4069"; chr4 rmsk exon 45613712 45614094 2480 + . gene_id "HERVH48_4p12"; transcript_id "HERVH48_4p12"; locus "HERVH48_4p12"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0015"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4p12d ### chr4 rmsk gene 45677733 45681279 . + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0681"; model_cov "1565"; model_pct "29.9"; chr4 rmsk exon 45677733 45677979 318 + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0681"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "-75"; repStart "115"; chr4 rmsk exon 45678068 45678431 694 + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0681"; repClass "LTR"; repEnd "604"; repFamily "ERVL"; repLeft "-4622"; repStart "233"; chr4 rmsk exon 45679469 45679759 2270 + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0681"; repClass "LTR"; repEnd "890"; repFamily "ERVL"; repLeft "-4336"; repStart "599"; chr4 rmsk exon 45680167 45680322 2270 + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0681"; repClass "LTR"; repEnd "1044"; repFamily "ERVL"; repLeft "-4182"; repStart "891"; chr4 rmsk exon 45680628 45681279 2270 + . gene_id "ERV316A3_4p12d"; transcript_id "ERV316A3_4p12d"; locus "ERV316A3_4p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0681"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3201"; repStart "1275"; ### ERV316A3_4p12e ### chr4 rmsk gene 45687415 45689470 . - . gene_id "ERV316A3_4p12e"; transcript_id "ERV316A3_4p12e"; locus "ERV316A3_4p12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0682"; model_cov "1119"; model_pct "21.4"; chr4 rmsk exon 45687415 45687674 441 - . gene_id "ERV316A3_4p12e"; transcript_id "ERV316A3_4p12e"; locus "ERV316A3_4p12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0682"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "2"; repStart "-186"; chr4 rmsk exon 45687825 45688214 892 - . gene_id "ERV316A3_4p12e"; transcript_id "ERV316A3_4p12e"; locus "ERV316A3_4p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0682"; repClass "LTR"; repEnd "3699"; repFamily "ERVL"; repLeft "3308"; repStart "-1527"; chr4 rmsk exon 45688915 45689470 1225 - . gene_id "ERV316A3_4p12e"; transcript_id "ERV316A3_4p12e"; locus "ERV316A3_4p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0682"; repClass "LTR"; repEnd "2924"; repFamily "ERVL"; repLeft "2196"; repStart "-2302"; ### ERV316A3_4p12f ### chr4 rmsk gene 45715217 45718460 . + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0683"; model_cov "2367"; model_pct "45.3"; chr4 rmsk exon 45715217 45715251 1125 + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0683"; repClass "LTR"; repEnd "1171"; repFamily "ERVL"; repLeft "-4055"; repStart "1137"; chr4 rmsk exon 45715753 45717150 1125 + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0683"; repClass "LTR"; repEnd "2598"; repFamily "ERVL"; repLeft "-2628"; repStart "1172"; chr4 rmsk exon 45717147 45717391 528 + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0683"; repClass "LTR"; repEnd "2566"; repFamily "ERVL"; repLeft "-2660"; repStart "2314"; chr4 rmsk exon 45717712 45717878 327 + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0683"; repClass "LTR"; repEnd "3339"; repFamily "ERVL"; repLeft "-1887"; repStart "3181"; chr4 rmsk exon 45717924 45718460 1028 + . gene_id "ERV316A3_4p12f"; transcript_id "ERV316A3_4p12f"; locus "ERV316A3_4p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0683"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "-1617"; repStart "3112"; ### ERVLE_4p12c ### chr4 rmsk gene 46132097 46135708 . + . gene_id "ERVLE_4p12c"; transcript_id "ERVLE_4p12c"; locus "ERVLE_4p12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0959"; model_cov "3289"; model_pct "58.0"; chr4 rmsk exon 46132097 46132599 993 + . gene_id "ERVLE_4p12c"; transcript_id "ERVLE_4p12c"; locus "ERVLE_4p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0959"; repClass "LTR"; repEnd "1415"; repFamily "ERVL"; repLeft "-4252"; repStart "840"; chr4 rmsk exon 46132599 46132787 338 + . gene_id "ERVLE_4p12c"; transcript_id "ERVLE_4p12c"; locus "ERVLE_4p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0959"; repClass "LTR"; repEnd "1537"; repFamily "ERVL"; repLeft "-4130"; repStart "1378"; chr4 rmsk exon 46133150 46133696 1227 + . gene_id "ERVLE_4p12c"; transcript_id "ERVLE_4p12c"; locus "ERVLE_4p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0959"; repClass "LTR"; repEnd "2098"; repFamily "ERVL"; repLeft "-3569"; repStart "1533"; chr4 rmsk exon 46133793 46135708 5800 + . gene_id "ERVLE_4p12c"; transcript_id "ERVLE_4p12c"; locus "ERVLE_4p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0959"; repClass "LTR"; repEnd "4230"; repFamily "ERVL"; repLeft "-1437"; repStart "2240"; ### HERVL_4p12a ### chr4 rmsk gene 46156611 46159875 . + . gene_id "HERVL_4p12a"; transcript_id "HERVL_4p12a"; locus "HERVL_4p12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0362"; model_cov "2422"; model_pct "42.8"; chr4 rmsk exon 46156611 46157046 2799 + . gene_id "HERVL_4p12a"; transcript_id "HERVL_4p12a"; locus "HERVL_4p12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0362"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr4 rmsk exon 46157048 46157900 6547 + . gene_id "HERVL_4p12a"; transcript_id "HERVL_4p12a"; locus "HERVL_4p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0362"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "-4805"; repStart "1"; chr4 rmsk exon 46157885 46159442 11728 + . gene_id "HERVL_4p12a"; transcript_id "HERVL_4p12a"; locus "HERVL_4p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0362"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4080"; chr4 rmsk exon 46159443 46159875 2874 + . gene_id "HERVL_4p12a"; transcript_id "HERVL_4p12a"; locus "HERVL_4p12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0362"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "-110"; ### ERVLB4_4p12b ### chr4 rmsk gene 46223017 46229708 . + . gene_id "ERVLB4_4p12b"; transcript_id "ERVLB4_4p12b"; locus "ERVLB4_4p12b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0429"; model_cov "5711"; model_pct "99.9"; chr4 rmsk exon 46223017 46223495 1214 + . gene_id "ERVLB4_4p12b"; transcript_id "ERVLB4_4p12b"; locus "ERVLB4_4p12b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0429"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-8"; repStart "81"; chr4 rmsk exon 46223504 46229156 28666 + . gene_id "ERVLB4_4p12b"; transcript_id "ERVLB4_4p12b"; locus "ERVLB4_4p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0429"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr4 rmsk exon 46229159 46229599 1999 + . gene_id "ERVLB4_4p12b"; transcript_id "ERVLB4_4p12b"; locus "ERVLB4_4p12b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0429"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr4 rmsk exon 46229675 46229708 528 + . gene_id "ERVLB4_4p12b"; transcript_id "ERVLB4_4p12b"; locus "ERVLB4_4p12b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0429"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "-52"; repStart "437"; ### HERVL_4p12b ### chr4 rmsk gene 46291379 46297476 . + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0363"; model_cov "5283"; model_pct "93.4"; chr4 rmsk exon 46291379 46291776 2908 + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0363"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr4 rmsk exon 46291821 46291865 2908 + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0363"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "406"; chr4 rmsk exon 46291866 46292513 4636 + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0363"; repClass "LTR"; repEnd "647"; repFamily "ERVL"; repLeft "-5007"; repStart "1"; chr4 rmsk exon 46292514 46297085 33665 + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0363"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1017"; chr4 rmsk exon 46297086 46297476 2947 + . gene_id "HERVL_4p12b"; transcript_id "HERVL_4p12b"; locus "HERVL_4p12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0363"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### PABLB_4p12a ### chr4 rmsk gene 46402355 46404432 . - . gene_id "PABLB_4p12a"; transcript_id "PABLB_4p12a"; locus "PABLB_4p12a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0027"; model_cov "2065"; model_pct "29.0"; chr4 rmsk exon 46402355 46404432 1407 - . gene_id "PABLB_4p12a"; transcript_id "PABLB_4p12a"; locus "PABLB_4p12a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0027"; repClass "LTR"; repEnd "5460"; repFamily "ERV1"; repLeft "3395"; repStart "-1662"; ### PABLB_4p12b ### chr4 rmsk gene 46410822 46411489 . - . gene_id "PABLB_4p12b"; transcript_id "PABLB_4p12b"; locus "PABLB_4p12b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0028"; model_cov "1008"; model_pct "14.2"; chr4 rmsk exon 46410822 46411489 952 - . gene_id "PABLB_4p12b"; transcript_id "PABLB_4p12b"; locus "PABLB_4p12b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0028"; repClass "LTR"; repEnd "4183"; repFamily "ERV1"; repLeft "3175"; repStart "-2939"; ### HERVL_4p12c ### chr4 rmsk gene 46485515 46490651 . + . gene_id "HERVL_4p12c"; transcript_id "HERVL_4p12c"; locus "HERVL_4p12c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0364"; model_cov "4678"; model_pct "82.7"; chr4 rmsk exon 46485515 46485943 2882 + . gene_id "HERVL_4p12c"; transcript_id "HERVL_4p12c"; locus "HERVL_4p12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0364"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 46485985 46490651 35496 + . gene_id "HERVL_4p12c"; transcript_id "HERVL_4p12c"; locus "HERVL_4p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0364"; repClass "LTR"; repEnd "4902"; repFamily "ERVL"; repLeft "-752"; repStart "224"; ### HERVL_4p12d ### chr4 rmsk gene 46518016 46523035 . - . gene_id "HERVL_4p12d"; transcript_id "HERVL_4p12d"; locus "HERVL_4p12d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0365"; model_cov "4210"; model_pct "74.5"; chr4 rmsk exon 46518016 46518585 1880 - . gene_id "HERVL_4p12d"; transcript_id "HERVL_4p12d"; locus "HERVL_4p12d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0365"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr4 rmsk exon 46518586 46521240 36460 - . gene_id "HERVL_4p12d"; transcript_id "HERVL_4p12d"; locus "HERVL_4p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0365"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2965"; repStart "0"; chr4 rmsk exon 46521568 46523035 36460 - . gene_id "HERVL_4p12d"; transcript_id "HERVL_4p12d"; locus "HERVL_4p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0365"; repClass "LTR"; repEnd "2964"; repFamily "ERVL"; repLeft "1443"; repStart "-2690"; ### HERVL_4p12e ### chr4 rmsk gene 46523144 46525077 . - . gene_id "HERVL_4p12e"; transcript_id "HERVL_4p12e"; locus "HERVL_4p12e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0366"; model_cov "1440"; model_pct "25.5"; chr4 rmsk exon 46523144 46524530 36460 - . gene_id "HERVL_4p12e"; transcript_id "HERVL_4p12e"; locus "HERVL_4p12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0366"; repClass "LTR"; repEnd "2964"; repFamily "ERVL"; repLeft "1524"; repStart "-2690"; chr4 rmsk exon 46524532 46525077 1946 - . gene_id "HERVL_4p12e"; transcript_id "HERVL_4p12e"; locus "HERVL_4p12e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0366"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HERVL_4p12f ### chr4 rmsk gene 46636947 46641369 . - . gene_id "HERVL_4p12f"; transcript_id "HERVL_4p12f"; locus "HERVL_4p12f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0367"; model_cov "4029"; model_pct "71.3"; chr4 rmsk exon 46636947 46637428 2809 - . gene_id "HERVL_4p12f"; transcript_id "HERVL_4p12f"; locus "HERVL_4p12f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0367"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 46637429 46641369 30213 - . gene_id "HERVL_4p12f"; transcript_id "HERVL_4p12f"; locus "HERVL_4p12f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0367"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1625"; repStart "0"; ### ERVLE_4p12d ### chr4 rmsk gene 46729772 46731793 . + . gene_id "ERVLE_4p12d"; transcript_id "ERVLE_4p12d"; locus "ERVLE_4p12d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0960"; model_cov "1334"; model_pct "23.5"; chr4 rmsk exon 46729772 46731049 5381 + . gene_id "ERVLE_4p12d"; transcript_id "ERVLE_4p12d"; locus "ERVLE_4p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0960"; repClass "LTR"; repEnd "4870"; repFamily "ERVL"; repLeft "-797"; repStart "3536"; chr4 rmsk exon 46731199 46731793 1273 + . gene_id "ERVLE_4p12d"; transcript_id "ERVLE_4p12d"; locus "ERVLE_4p12d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0960"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "5"; ### ERVLB4_4p12c ### chr4 rmsk gene 46792266 46798906 . + . gene_id "ERVLB4_4p12c"; transcript_id "ERVLB4_4p12c"; locus "ERVLB4_4p12c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0431"; model_cov "3594"; model_pct "62.9"; chr4 rmsk exon 46792266 46792745 1594 + . gene_id "ERVLB4_4p12c"; transcript_id "ERVLB4_4p12c"; locus "ERVLB4_4p12c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0431"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "-10"; repStart "1"; chr4 rmsk exon 46792756 46792994 4919 + . gene_id "ERVLB4_4p12c"; transcript_id "ERVLB4_4p12c"; locus "ERVLB4_4p12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0431"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "-5429"; repStart "52"; chr4 rmsk exon 46793494 46794991 5810 + . gene_id "ERVLB4_4p12c"; transcript_id "ERVLB4_4p12c"; locus "ERVLB4_4p12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0431"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "-3924"; repStart "239"; chr4 rmsk exon 46797123 46798906 10520 + . gene_id "ERVLB4_4p12c"; transcript_id "ERVLB4_4p12c"; locus "ERVLB4_4p12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0431"; repClass "LTR"; repEnd "3594"; repFamily "ERVL"; repLeft "-2120"; repStart "1784"; ### ERV316A3_4p12g ### chr4 rmsk gene 47945917 47949520 . + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0684"; model_cov "1950"; model_pct "37.3"; chr4 rmsk exon 47945917 47945970 276 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "1653"; repFamily "ERVL"; repLeft "-3573"; repStart "1600"; chr4 rmsk exon 47946108 47946597 1080 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "-2235"; repStart "2379"; chr4 rmsk exon 47947141 47947392 1164 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "-1610"; repStart "3324"; chr4 rmsk exon 47947699 47947877 1164 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "3778"; repFamily "ERVL"; repLeft "-1448"; repStart "3617"; chr4 rmsk exon 47947907 47948739 1606 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "-370"; repStart "4024"; chr4 rmsk exon 47949132 47949520 1163 + . gene_id "ERV316A3_4p12g"; transcript_id "ERV316A3_4p12g"; locus "ERV316A3_4p12g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0684"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "44"; ### MER4_4p12a ### chr4 rmsk gene 48004464 48008688 . - . gene_id "MER4_4p12a"; transcript_id "MER4_4p12a"; locus "MER4_4p12a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0205"; model_cov "4480"; model_pct "67.9"; chr4 rmsk exon 48004464 48005101 15753 - . gene_id "MER4_4p12a"; transcript_id "MER4_4p12a"; locus "MER4_4p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0205"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5962"; repStart "-2"; chr4 rmsk exon 48005416 48006630 15753 - . gene_id "MER4_4p12a"; transcript_id "MER4_4p12a"; locus "MER4_4p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0205"; repClass "LTR"; repEnd "5961"; repFamily "ERV1"; repLeft "4728"; repStart "-637"; chr4 rmsk exon 48006910 48007806 15753 - . gene_id "MER4_4p12a"; transcript_id "MER4_4p12a"; locus "MER4_4p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0205"; repClass "LTR"; repEnd "4727"; repFamily "ERV1"; repLeft "3837"; repStart "-1871"; chr4 rmsk exon 48007805 48008688 7068 - . gene_id "MER4_4p12a"; transcript_id "MER4_4p12a"; locus "MER4_4p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0205"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "1958"; repStart "-2917"; ### MER4_4p12b ### chr4 rmsk gene 48008889 48010455 . - . gene_id "MER4_4p12b"; transcript_id "MER4_4p12b"; locus "MER4_4p12b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0206"; model_cov "1271"; model_pct "19.3"; chr4 rmsk exon 48008889 48009185 7068 - . gene_id "MER4_4p12b"; transcript_id "MER4_4p12b"; locus "MER4_4p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0206"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3099"; repStart "-2917"; chr4 rmsk exon 48009482 48009523 7068 - . gene_id "MER4_4p12b"; transcript_id "MER4_4p12b"; locus "MER4_4p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0206"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "2173"; repStart "-4378"; chr4 rmsk exon 48009824 48010455 7068 - . gene_id "MER4_4p12b"; transcript_id "MER4_4p12b"; locus "MER4_4p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0206"; repClass "LTR"; repEnd "2172"; repFamily "ERV1"; repLeft "1530"; repStart "-4426"; ### MER4_4p12c ### chr4 rmsk gene 48011252 48013262 . - . gene_id "MER4_4p12c"; transcript_id "MER4_4p12c"; locus "MER4_4p12c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0207"; model_cov "1237"; model_pct "18.7"; chr4 rmsk exon 48011252 48011379 6401 - . gene_id "MER4_4p12c"; transcript_id "MER4_4p12c"; locus "MER4_4p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0207"; repClass "LTR"; repEnd "2293"; repFamily "ERV1"; repLeft "2175"; repStart "-4305"; chr4 rmsk exon 48011420 48011514 6401 - . gene_id "MER4_4p12c"; transcript_id "MER4_4p12c"; locus "MER4_4p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0207"; repClass "LTR"; repEnd "2174"; repFamily "ERV1"; repLeft "2087"; repStart "-4424"; chr4 rmsk exon 48012272 48012558 4708 - . gene_id "MER4_4p12c"; transcript_id "MER4_4p12c"; locus "MER4_4p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0207"; repClass "LTR"; repEnd "1034"; repFamily "ERV1"; repLeft "808"; repStart "-5564"; chr4 rmsk exon 48012592 48013262 4708 - . gene_id "MER4_4p12c"; transcript_id "MER4_4p12c"; locus "MER4_4p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0207"; repClass "LTR"; repEnd "807"; repFamily "ERV1"; repLeft "1"; repStart "-5791"; ### ERVLE_4p12e ### chr4 rmsk gene 48117258 48118641 . - . gene_id "ERVLE_4p12e"; transcript_id "ERVLE_4p12e"; locus "ERVLE_4p12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0962"; model_cov "1367"; model_pct "24.1"; chr4 rmsk exon 48117258 48117899 1753 - . gene_id "ERVLE_4p12e"; transcript_id "ERVLE_4p12e"; locus "ERVLE_4p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0962"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "4483"; repStart "-510"; chr4 rmsk exon 48117988 48118641 1354 - . gene_id "ERVLE_4p12e"; transcript_id "ERVLE_4p12e"; locus "ERVLE_4p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0962"; repClass "LTR"; repEnd "3922"; repFamily "ERVL"; repLeft "3229"; repStart "-1745"; ### MER4_4p11a ### chr4 rmsk gene 49207302 49208281 . - . gene_id "MER4_4p11a"; transcript_id "MER4_4p11a"; locus "MER4_4p11a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0208"; model_cov "871"; model_pct "13.2"; chr4 rmsk exon 49207302 49207461 602 - . gene_id "MER4_4p11a"; transcript_id "MER4_4p11a"; locus "MER4_4p11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0208"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "935"; repStart "-5502"; chr4 rmsk exon 49207609 49207716 452 - . gene_id "MER4_4p11a"; transcript_id "MER4_4p11a"; locus "MER4_4p11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0208"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-723"; repStart "-7237"; chr4 rmsk exon 49207721 49208281 2392 - . gene_id "MER4_4p11a"; transcript_id "MER4_4p11a"; locus "MER4_4p11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0208"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "29"; repStart "-5943"; ### MER4_4p11b ### chr4 rmsk gene 49584193 49585173 . + . gene_id "MER4_4p11b"; transcript_id "MER4_4p11b"; locus "MER4_4p11b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0209"; model_cov "794"; model_pct "12.0"; chr4 rmsk exon 49584193 49584299 426 + . gene_id "MER4_4p11b"; transcript_id "MER4_4p11b"; locus "MER4_4p11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0209"; repClass "LTR"; repEnd "161"; repFamily "ERV1"; repLeft "-6437"; repStart "29"; chr4 rmsk exon 49584374 49584754 1512 + . gene_id "MER4_4p11b"; transcript_id "MER4_4p11b"; locus "MER4_4p11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0209"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-5943"; repStart "238"; chr4 rmsk exon 49584759 49584843 409 + . gene_id "MER4_4p11b"; transcript_id "MER4_4p11b"; locus "MER4_4p11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0209"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-723"; chr4 rmsk exon 49585014 49585173 593 + . gene_id "MER4_4p11b"; transcript_id "MER4_4p11b"; locus "MER4_4p11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0209"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "-5502"; repStart "935"; ### HERVIP10F_4q12 ### chr4 rmsk gene 51817237 51819827 . - . gene_id "HERVIP10F_4q12"; transcript_id "HERVIP10F_4q12"; locus "HERVIP10F_4q12"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0036"; model_cov "2177"; model_pct "28.1"; chr4 rmsk exon 51817237 51818951 8388 - . gene_id "HERVIP10F_4q12"; transcript_id "HERVIP10F_4q12"; locus "HERVIP10F_4q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0036"; repClass "LTR"; repEnd "2687"; repFamily "ERV1"; repLeft "984"; repStart "-5050"; chr4 rmsk exon 51819287 51819827 1285 - . gene_id "HERVIP10F_4q12"; transcript_id "HERVIP10F_4q12"; locus "HERVIP10F_4q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0036"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "501"; repStart "-6762"; ### ERVLB4_4q12a ### chr4 rmsk gene 51921903 51926197 . - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0432"; model_cov "2943"; model_pct "51.5"; chr4 rmsk exon 51921903 51922413 1885 - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0432"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 51922414 51922714 12467 - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0432"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5394"; repStart "0"; chr4 rmsk exon 51923073 51925111 12467 - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0432"; repClass "LTR"; repEnd "5393"; repFamily "ERVL"; repLeft "3275"; repStart "-321"; chr4 rmsk exon 51925118 51925566 2304 - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0432"; repClass "LTR"; repEnd "2957"; repFamily "ERVL"; repLeft "2499"; repStart "-2757"; chr4 rmsk exon 51926150 51926197 347 - . gene_id "ERVLB4_4q12a"; transcript_id "ERVLB4_4q12a"; locus "ERVLB4_4q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0432"; repClass "LTR"; repEnd "1114"; repFamily "ERVL"; repLeft "1067"; repStart "-4600"; ### ERVLB4_4q12b ### chr4 rmsk gene 51926541 51927443 . - . gene_id "ERVLB4_4q12b"; transcript_id "ERVLB4_4q12b"; locus "ERVLB4_4q12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0433"; model_cov "595"; model_pct "10.4"; chr4 rmsk exon 51926541 51926647 761 - . gene_id "ERVLB4_4q12b"; transcript_id "ERVLB4_4q12b"; locus "ERVLB4_4q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0433"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "2389"; repStart "-3219"; chr4 rmsk exon 51926643 51926854 9629 - . gene_id "ERVLB4_4q12b"; transcript_id "ERVLB4_4q12b"; locus "ERVLB4_4q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0433"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "1847"; repStart "-3672"; chr4 rmsk exon 51927156 51927443 9629 - . gene_id "ERVLB4_4q12b"; transcript_id "ERVLB4_4q12b"; locus "ERVLB4_4q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0433"; repClass "LTR"; repEnd "1846"; repFamily "ERVL"; repLeft "1552"; repStart "-3868"; ### ERVLB4_4q12c ### chr4 rmsk gene 51927522 51930053 . - . gene_id "ERVLB4_4q12c"; transcript_id "ERVLB4_4q12c"; locus "ERVLB4_4q12c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0434"; model_cov "1549"; model_pct "27.1"; chr4 rmsk exon 51927522 51928042 9629 - . gene_id "ERVLB4_4q12c"; transcript_id "ERVLB4_4q12c"; locus "ERVLB4_4q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0434"; repClass "LTR"; repEnd "1846"; repFamily "ERVL"; repLeft "1310"; repStart "-3868"; chr4 rmsk exon 51928344 51929381 9629 - . gene_id "ERVLB4_4q12c"; transcript_id "ERVLB4_4q12c"; locus "ERVLB4_4q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0434"; repClass "LTR"; repEnd "1014"; repFamily "ERVL"; repLeft "1"; repStart "-4700"; chr4 rmsk exon 51929590 51930053 1932 - . gene_id "ERVLB4_4q12c"; transcript_id "ERVLB4_4q12c"; locus "ERVLB4_4q12c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0434"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### PRIMA41_4q12 ### chr4 rmsk gene 52345017 52351152 . - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0048"; model_cov "5177"; model_pct "66.7"; chr4 rmsk exon 52345017 52345537 4024 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 52345538 52346090 4464 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7199"; repStart "0"; chr4 rmsk exon 52346082 52348085 15306 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "4394"; repStart "-1361"; chr4 rmsk exon 52348081 52349746 11628 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "1363"; repStart "-4701"; chr4 rmsk exon 52349739 52350630 6395 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "3"; repStart "-6826"; chr4 rmsk exon 52350633 52351152 4140 - . gene_id "PRIMA41_4q12"; transcript_id "PRIMA41_4q12"; locus "PRIMA41_4q12"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0048"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR23_4q12 ### chr4 rmsk gene 52687704 52689934 . + . gene_id "LTR23_4q12"; transcript_id "LTR23_4q12"; locus "LTR23_4q12"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0030"; model_cov "1434"; model_pct "28.0"; chr4 rmsk exon 52687704 52688113 2371 + . gene_id "LTR23_4q12"; transcript_id "LTR23_4q12"; locus "LTR23_4q12"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0030"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-3855"; repStart "873"; chr4 rmsk exon 52688414 52688647 2371 + . gene_id "LTR23_4q12"; transcript_id "LTR23_4q12"; locus "LTR23_4q12"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0030"; repClass "LTR"; repEnd "1435"; repFamily "ERV1"; repLeft "-3688"; repStart "1269"; chr4 rmsk exon 52688796 52689403 3099 + . gene_id "LTR23_4q12"; transcript_id "LTR23_4q12"; locus "LTR23_4q12"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0030"; repClass "LTR"; repEnd "1797"; repFamily "ERV1"; repLeft "-3326"; repStart "1149"; chr4 rmsk exon 52689701 52689934 3099 + . gene_id "LTR23_4q12"; transcript_id "LTR23_4q12"; locus "LTR23_4q12"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0030"; repClass "LTR"; repEnd "2023"; repFamily "ERV1"; repLeft "-3100"; repStart "1798"; ### HERVH_4q12a ### chr4 rmsk gene 54020079 54025546 . + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0370"; model_cov "4836"; model_pct "62.7"; chr4 rmsk exon 54020079 54020510 3266 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 54020511 54020916 1237 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr4 rmsk exon 54020992 54023049 12411 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "2837"; repFamily "ERV1"; repLeft "-4876"; repStart "793"; chr4 rmsk exon 54023043 54024308 4346 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "-1772"; repStart "4413"; chr4 rmsk exon 54024299 54024559 1543 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr4 rmsk exon 54024550 54025116 3800 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7154"; chr4 rmsk exon 54025117 54025546 3377 + . gene_id "HERVH_4q12a"; transcript_id "HERVH_4q12a"; locus "HERVH_4q12a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0370"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q12a ### chr4 rmsk gene 54959605 54960538 . + . gene_id "ERVLE_4q12a"; transcript_id "ERVLE_4q12a"; locus "ERVLE_4q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0963"; model_cov "690"; model_pct "12.2"; chr4 rmsk exon 54959605 54960116 2021 + . gene_id "ERVLE_4q12a"; transcript_id "ERVLE_4q12a"; locus "ERVLE_4q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0963"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-882"; repStart "4273"; chr4 rmsk exon 54960373 54960538 2021 + . gene_id "ERVLE_4q12a"; transcript_id "ERVLE_4q12a"; locus "ERVLE_4q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0963"; repClass "LTR"; repEnd "4964"; repFamily "ERVL"; repLeft "-703"; repStart "4786"; ### HERVIP10FH_4q12 ### chr4 rmsk gene 55338515 55341621 . + . gene_id "HERVIP10FH_4q12"; transcript_id "HERVIP10FH_4q12"; locus "HERVIP10FH_4q12"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0050"; model_cov "2805"; model_pct "55.0"; chr4 rmsk exon 55338515 55339073 3052 + . gene_id "HERVIP10FH_4q12"; transcript_id "HERVIP10FH_4q12"; locus "HERVIP10FH_4q12"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0050"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr4 rmsk exon 55339098 55339375 1361 + . gene_id "HERVIP10FH_4q12"; transcript_id "HERVIP10FH_4q12"; locus "HERVIP10FH_4q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0050"; repClass "LTR"; repEnd "-2204"; repFamily "ERV1"; repLeft "-7306"; repStart "-2479"; chr4 rmsk exon 55339413 55339764 425 + . gene_id "HERVIP10FH_4q12"; transcript_id "HERVIP10FH_4q12"; locus "HERVIP10FH_4q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0050"; repClass "LTR"; repEnd "-2034"; repFamily "ERV1"; repLeft "-7136"; repStart "-2395"; chr4 rmsk exon 55339951 55341621 5999 + . gene_id "HERVIP10FH_4q12"; transcript_id "HERVIP10FH_4q12"; locus "HERVIP10FH_4q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0050"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-2313"; repStart "620"; ### HERV4_4q12 ### chr4 rmsk gene 55938235 55948186 . - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0032"; model_cov "6549"; model_pct "100.0"; chr4 rmsk exon 55938235 55938380 400 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "657"; repFamily "ERV1"; repLeft "500"; repStart "0"; chr4 rmsk exon 55938514 55938594 396 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "258"; repStart "-319"; chr4 rmsk exon 55938728 55939284 634 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "5552"; repStart "-2"; chr4 rmsk exon 55940391 55945576 24400 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "6182"; repFamily "ERV1"; repLeft "938"; repStart "-357"; chr4 rmsk exon 55946026 55946263 15011 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "937"; repFamily "ERV1"; repLeft "694"; repStart "-5602"; chr4 rmsk exon 55947778 55947862 287 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "78"; repFamily "ERV1"; repLeft "1"; repStart "-6461"; chr4 rmsk exon 55947863 55947994 408 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "657"; repFamily "ERV1"; repLeft "518"; repStart "0"; chr4 rmsk exon 55948140 55948186 276 - . gene_id "HERV4_4q12"; transcript_id "HERV4_4q12"; locus "HERV4_4q12"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0032"; repClass "LTR"; repEnd "333"; repFamily "ERV1"; repLeft "287"; repStart "-324"; ### HERVL40_4q12 ### chr4 rmsk gene 56037895 56041727 . - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0092"; model_cov "1946"; model_pct "35.2"; chr4 rmsk exon 56037895 56038333 2711 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "5451"; repFamily "ERVL"; repLeft "5002"; repStart "-79"; chr4 rmsk exon 56038635 56039008 2711 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "4636"; repStart "-529"; chr4 rmsk exon 56039015 56039330 1105 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "2477"; repFamily "ERVL"; repLeft "2166"; repStart "-3053"; chr4 rmsk exon 56039922 56040037 515 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "2179"; repFamily "ERVL"; repLeft "2050"; repStart "-3351"; chr4 rmsk exon 56040037 56040518 1359 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1125"; repStart "-3913"; chr4 rmsk exon 56040831 56040992 1359 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "1124"; repFamily "ERVL"; repLeft "924"; repStart "-4406"; chr4 rmsk exon 56041278 56041727 1531 - . gene_id "HERVL40_4q12"; transcript_id "HERVL40_4q12"; locus "HERVL40_4q12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0092"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "26"; repStart "-19"; ### ERVLB4_4q12d ### chr4 rmsk gene 56255572 56260979 . + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0436"; model_cov "2291"; model_pct "40.1"; chr4 rmsk exon 56255572 56256102 4474 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-2436"; repStart "2741"; chr4 rmsk exon 56256461 56256769 4474 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "3582"; repFamily "ERVL"; repLeft "-2132"; repStart "3279"; chr4 rmsk exon 56258519 56258907 2080 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "3983"; repFamily "ERVL"; repLeft "-1731"; repStart "3568"; chr4 rmsk exon 56258922 56258986 3904 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "-976"; repStart "4675"; chr4 rmsk exon 56259587 56260483 3904 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4739"; chr4 rmsk exon 56260485 56260843 1044 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr4 rmsk exon 56260935 56260979 1044 + . gene_id "ERVLB4_4q12d"; transcript_id "ERVLB4_4q12d"; locus "ERVLB4_4q12d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0436"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-11"; repStart "343"; ### ERVLE_4q12b ### chr4 rmsk gene 56584757 56585937 . - . gene_id "ERVLE_4q12b"; transcript_id "ERVLE_4q12b"; locus "ERVLE_4q12b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0966"; model_cov "774"; model_pct "13.7"; chr4 rmsk exon 56584757 56584883 566 - . gene_id "ERVLE_4q12b"; transcript_id "ERVLE_4q12b"; locus "ERVLE_4q12b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0966"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "537"; repStart "0"; chr4 rmsk exon 56584889 56585345 2851 - . gene_id "ERVLE_4q12b"; transcript_id "ERVLE_4q12b"; locus "ERVLE_4q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0966"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "349"; repStart "-4859"; chr4 rmsk exon 56585642 56585937 2851 - . gene_id "ERVLE_4q12b"; transcript_id "ERVLE_4q12b"; locus "ERVLE_4q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0966"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "33"; repStart "-5319"; ### MER41_4q12a ### chr4 rmsk gene 56947811 56950653 . - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0120"; model_cov "1930"; model_pct "32.5"; chr4 rmsk exon 56947811 56948237 3667 - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0120"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "1"; repStart "-113"; chr4 rmsk exon 56948238 56949023 5895 - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0120"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5132"; repStart "-2"; chr4 rmsk exon 56949057 56949362 4937 - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0120"; repClass "LTR"; repEnd "1121"; repFamily "ERV1"; repLeft "722"; repStart "-4825"; chr4 rmsk exon 56949666 56950357 4937 - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0120"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "2"; repStart "-5225"; chr4 rmsk exon 56950529 56950653 4256 - . gene_id "MER41_4q12a"; transcript_id "MER41_4q12a"; locus "MER41_4q12a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0120"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "437"; repStart "0"; ### MER41_4q12b ### chr4 rmsk gene 57135749 57141668 . - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0121"; model_cov "4704"; model_pct "79.1"; chr4 rmsk exon 57135749 57136055 3368 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0121"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "257"; repStart "-87"; chr4 rmsk exon 57136345 57136594 3368 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0121"; repClass "LTR"; repEnd "256"; repFamily "ERV1"; repLeft "1"; repStart "-378"; chr4 rmsk exon 57136595 57137786 14935 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0121"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4776"; repStart "0"; chr4 rmsk exon 57138080 57139104 14935 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0121"; repClass "LTR"; repEnd "4775"; repFamily "ERV1"; repLeft "3755"; repStart "-1171"; chr4 rmsk exon 57139105 57141514 11821 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0121"; repClass "LTR"; repEnd "2515"; repFamily "ERV1"; repLeft "1"; repStart "-3431"; chr4 rmsk exon 57141515 57141668 1155 - . gene_id "MER41_4q12b"; transcript_id "MER41_4q12b"; locus "MER41_4q12b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0121"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### ERVLE_4q12c ### chr4 rmsk gene 57500653 57501395 . + . gene_id "ERVLE_4q12c"; transcript_id "ERVLE_4q12c"; locus "ERVLE_4q12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0967"; model_cov "791"; model_pct "14.0"; chr4 rmsk exon 57500653 57501395 772 + . gene_id "ERVLE_4q12c"; transcript_id "ERVLE_4q12c"; locus "ERVLE_4q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0967"; repClass "LTR"; repEnd "3313"; repFamily "ERVL"; repLeft "-2354"; repStart "2522"; ### MER4B_4q12 ### chr4 rmsk gene 57825255 57828193 . - . gene_id "MER4B_4q12"; transcript_id "MER4B_4q12"; locus "MER4B_4q12"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0117"; model_cov "2390"; model_pct "35.4"; chr4 rmsk exon 57825255 57826736 6062 - . gene_id "MER4B_4q12"; transcript_id "MER4B_4q12"; locus "MER4B_4q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0117"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "4928"; repStart "-1"; chr4 rmsk exon 57827284 57827396 1765 - . gene_id "MER4B_4q12"; transcript_id "MER4B_4q12"; locus "MER4B_4q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0117"; repClass "LTR"; repEnd "4867"; repFamily "ERV1"; repLeft "4766"; repStart "-1891"; chr4 rmsk exon 57827698 57827907 1765 - . gene_id "MER4B_4q12"; transcript_id "MER4B_4q12"; locus "MER4B_4q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0117"; repClass "LTR"; repEnd "4765"; repFamily "ERV1"; repLeft "4558"; repStart "-1993"; chr4 rmsk exon 57827902 57828193 1086 - . gene_id "MER4B_4q12"; transcript_id "MER4B_4q12"; locus "MER4B_4q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0117"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "2685"; repStart "-3820"; ### ERVLE_4q12d ### chr4 rmsk gene 57834043 57835937 . - . gene_id "ERVLE_4q12d"; transcript_id "ERVLE_4q12d"; locus "ERVLE_4q12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0968"; model_cov "1532"; model_pct "27.0"; chr4 rmsk exon 57834043 57834771 2083 - . gene_id "ERVLE_4q12d"; transcript_id "ERVLE_4q12d"; locus "ERVLE_4q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0968"; repClass "LTR"; repEnd "5149"; repFamily "ERVL"; repLeft "4403"; repStart "-518"; chr4 rmsk exon 57834812 57835508 2083 - . gene_id "ERVLE_4q12d"; transcript_id "ERVLE_4q12d"; locus "ERVLE_4q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0968"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "3691"; repStart "-1265"; chr4 rmsk exon 57835862 57835937 265 - . gene_id "ERVLE_4q12d"; transcript_id "ERVLE_4q12d"; locus "ERVLE_4q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0968"; repClass "LTR"; repEnd "169"; repFamily "ERVL"; repLeft "94"; repStart "-5498"; ### ERVLE_4q12e ### chr4 rmsk gene 57850894 57854286 . + . gene_id "ERVLE_4q12e"; transcript_id "ERVLE_4q12e"; locus "ERVLE_4q12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0969"; model_cov "1698"; model_pct "30.0"; chr4 rmsk exon 57850894 57851760 882 + . gene_id "ERVLE_4q12e"; transcript_id "ERVLE_4q12e"; locus "ERVLE_4q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0969"; repClass "LTR"; repEnd "1658"; repFamily "ERVL"; repLeft "-4009"; repStart "758"; chr4 rmsk exon 57852736 57853282 1401 + . gene_id "ERVLE_4q12e"; transcript_id "ERVLE_4q12e"; locus "ERVLE_4q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0969"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "-1302"; repStart "3801"; chr4 rmsk exon 57854053 57854286 360 + . gene_id "ERVLE_4q12e"; transcript_id "ERVLE_4q12e"; locus "ERVLE_4q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0969"; repClass "LTR"; repEnd "4647"; repFamily "ERVL"; repLeft "-1020"; repStart "4413"; ### ERV316A3_4q12 ### chr4 rmsk gene 58101288 58103143 . - . gene_id "ERV316A3_4q12"; transcript_id "ERV316A3_4q12"; locus "ERV316A3_4q12"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0685"; model_cov "1542"; model_pct "29.5"; chr4 rmsk exon 58101288 58101417 511 - . gene_id "ERV316A3_4q12"; transcript_id "ERV316A3_4q12"; locus "ERV316A3_4q12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0685"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "2886"; repStart "-2203"; chr4 rmsk exon 58101449 58102053 1800 - . gene_id "ERV316A3_4q12"; transcript_id "ERV316A3_4q12"; locus "ERV316A3_4q12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0685"; repClass "LTR"; repEnd "2838"; repFamily "ERVL"; repLeft "2217"; repStart "-2388"; chr4 rmsk exon 58102052 58102399 2006 - . gene_id "ERV316A3_4q12"; transcript_id "ERV316A3_4q12"; locus "ERV316A3_4q12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0685"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "771"; repStart "-4100"; chr4 rmsk exon 58102715 58103143 2006 - . gene_id "ERV316A3_4q12"; transcript_id "ERV316A3_4q12"; locus "ERV316A3_4q12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0685"; repClass "LTR"; repEnd "770"; repFamily "ERVL"; repLeft "341"; repStart "-4456"; ### HERVH_4q12b ### chr4 rmsk gene 58290740 58295539 . - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0371"; model_cov "4343"; model_pct "56.3"; chr4 rmsk exon 58290740 58291128 2448 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 58291129 58291714 3410 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7149"; repStart "0"; chr4 rmsk exon 58291696 58292121 2649 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr4 rmsk exon 58292113 58292589 3148 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4660"; repStart "-2564"; chr4 rmsk exon 58292581 58293206 3170 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "4367"; repFamily "ERV1"; repLeft "3806"; repStart "-3346"; chr4 rmsk exon 58293201 58293649 2726 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr4 rmsk exon 58293629 58295539 11337 - . gene_id "HERVH_4q12b"; transcript_id "HERVH_4q12b"; locus "HERVH_4q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0371"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1139"; repStart "-4718"; ### ERVLB4_4q12e ### chr4 rmsk gene 58361092 58363712 . + . gene_id "ERVLB4_4q12e"; transcript_id "ERVLB4_4q12e"; locus "ERVLB4_4q12e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0438"; model_cov "1896"; model_pct "33.2"; chr4 rmsk exon 58361092 58361957 3680 + . gene_id "ERVLB4_4q12e"; transcript_id "ERVLB4_4q12e"; locus "ERVLB4_4q12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0438"; repClass "LTR"; repEnd "1283"; repFamily "ERVL"; repLeft "-4431"; repStart "292"; chr4 rmsk exon 58362695 58363712 3680 + . gene_id "ERVLB4_4q12e"; transcript_id "ERVLB4_4q12e"; locus "ERVLB4_4q12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0438"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "-3037"; repStart "1772"; ### MER61_4q12 ### chr4 rmsk gene 58490698 58491703 . - . gene_id "MER61_4q12"; transcript_id "MER61_4q12"; locus "MER61_4q12"; category "internal"; intModel "MER61-int"; locid "MER61-int_0108"; model_cov "1171"; model_pct "22.4"; chr4 rmsk exon 58490698 58491703 2841 - . gene_id "MER61_4q12"; transcript_id "MER61_4q12"; locus "MER61_4q12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0108"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "1474"; repStart "-2572"; ### MER41_4q13.1a ### chr4 rmsk gene 58669572 58675111 . + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0122"; model_cov "5314"; model_pct "89.4"; chr4 rmsk exon 58669572 58669705 369 + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0122"; repClass "LTR"; repEnd "-1057"; repFamily "ERV1"; repLeft "-7003"; repStart "-1202"; chr4 rmsk exon 58669719 58669768 256 + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0122"; repClass "LTR"; repEnd "-891"; repFamily "ERV1"; repLeft "-6837"; repStart "-940"; chr4 rmsk exon 58669761 58670914 4579 + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0122"; repClass "LTR"; repEnd "359"; repFamily "ERV1"; repLeft "-5587"; repStart "-739"; chr4 rmsk exon 58670945 58671106 4579 + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0122"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-5521"; repStart "360"; chr4 rmsk exon 58671212 58675111 11740 + . gene_id "MER41_4q13.1a"; transcript_id "MER41_4q13.1a"; locus "MER41_4q13.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0122"; repClass "LTR"; repEnd "5201"; repFamily "ERV1"; repLeft "-745"; repStart "1244"; ### ERVLE_4q13.1a ### chr4 rmsk gene 58961954 58962495 . - . gene_id "ERVLE_4q13.1a"; transcript_id "ERVLE_4q13.1a"; locus "ERVLE_4q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0970"; model_cov "596"; model_pct "10.5"; chr4 rmsk exon 58961954 58962495 1091 - . gene_id "ERVLE_4q13.1a"; transcript_id "ERVLE_4q13.1a"; locus "ERVLE_4q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0970"; repClass "LTR"; repEnd "2833"; repFamily "ERVL"; repLeft "2237"; repStart "-2834"; ### ERVLE_4q13.1b ### chr4 rmsk gene 59000597 59001260 . + . gene_id "ERVLE_4q13.1b"; transcript_id "ERVLE_4q13.1b"; locus "ERVLE_4q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0971"; model_cov "686"; model_pct "12.1"; chr4 rmsk exon 59000597 59001260 1664 + . gene_id "ERVLE_4q13.1b"; transcript_id "ERVLE_4q13.1b"; locus "ERVLE_4q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0971"; repClass "LTR"; repEnd "3221"; repFamily "ERVL"; repLeft "-2446"; repStart "2535"; ### ERV316A3_4q13.1a ### chr4 rmsk gene 59135516 59138895 . - . gene_id "ERV316A3_4q13.1a"; transcript_id "ERV316A3_4q13.1a"; locus "ERV316A3_4q13.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0686"; model_cov "2727"; model_pct "52.2"; chr4 rmsk exon 59135516 59135597 406 - . gene_id "ERV316A3_4q13.1a"; transcript_id "ERV316A3_4q13.1a"; locus "ERV316A3_4q13.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0686"; repClass "LTR"; repEnd "94"; repFamily "ERVL"; repLeft "12"; repStart "-368"; chr4 rmsk exon 59135648 59137056 4158 - . gene_id "ERV316A3_4q13.1a"; transcript_id "ERV316A3_4q13.1a"; locus "ERV316A3_4q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0686"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "3703"; repStart "-44"; chr4 rmsk exon 59137531 59137861 4158 - . gene_id "ERV316A3_4q13.1a"; transcript_id "ERV316A3_4q13.1a"; locus "ERV316A3_4q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0686"; repClass "LTR"; repEnd "3702"; repFamily "ERVL"; repLeft "3368"; repStart "-1524"; chr4 rmsk exon 59138014 59138895 1590 - . gene_id "ERV316A3_4q13.1a"; transcript_id "ERV316A3_4q13.1a"; locus "ERV316A3_4q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0686"; repClass "LTR"; repEnd "2521"; repFamily "ERVL"; repLeft "1607"; repStart "-2705"; ### ERVLE_4q13.1c ### chr4 rmsk gene 59198493 59199991 . - . gene_id "ERVLE_4q13.1c"; transcript_id "ERVLE_4q13.1c"; locus "ERVLE_4q13.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0972"; model_cov "832"; model_pct "14.7"; chr4 rmsk exon 59198493 59198992 648 - . gene_id "ERVLE_4q13.1c"; transcript_id "ERVLE_4q13.1c"; locus "ERVLE_4q13.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0972"; repClass "LTR"; repEnd "1779"; repFamily "ERVL"; repLeft "1282"; repStart "-3888"; chr4 rmsk exon 59199298 59199541 648 - . gene_id "ERVLE_4q13.1c"; transcript_id "ERVLE_4q13.1c"; locus "ERVLE_4q13.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0972"; repClass "LTR"; repEnd "1281"; repFamily "ERVL"; repLeft "1008"; repStart "-4386"; chr4 rmsk exon 59199929 59199991 256 - . gene_id "ERVLE_4q13.1c"; transcript_id "ERVLE_4q13.1c"; locus "ERVLE_4q13.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0972"; repClass "LTR"; repEnd "576"; repFamily "ERVL"; repLeft "514"; repStart "-5091"; ### ERVLB4_4q13.1a ### chr4 rmsk gene 59281105 59283956 . - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0440"; model_cov "2191"; model_pct "38.3"; chr4 rmsk exon 59281105 59281149 232 - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0440"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "511"; repStart "0"; chr4 rmsk exon 59281233 59281749 2582 - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0440"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-43"; chr4 rmsk exon 59281785 59282094 1418 - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0440"; repClass "LTR"; repEnd "5695"; repFamily "ERVL"; repLeft "5378"; repStart "-19"; chr4 rmsk exon 59282122 59282418 1483 - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0440"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "5095"; repStart "-317"; chr4 rmsk exon 59282406 59283956 9505 - . gene_id "ERVLB4_4q13.1a"; transcript_id "ERVLB4_4q13.1a"; locus "ERVLB4_4q13.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0440"; repClass "LTR"; repEnd "4957"; repFamily "ERVL"; repLeft "3385"; repStart "-757"; ### HUERSP2_4q13.1 ### chr4 rmsk gene 59374527 59379151 . - . gene_id "HUERSP2_4q13.1"; transcript_id "HUERSP2_4q13.1"; locus "HUERSP2_4q13.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0040"; model_cov "3001"; model_pct "97.2"; chr4 rmsk exon 59374527 59375315 4296 - . gene_id "HUERSP2_4q13.1"; transcript_id "HUERSP2_4q13.1"; locus "HUERSP2_4q13.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0040"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "55"; repStart "0"; chr4 rmsk exon 59375320 59378154 17108 - . gene_id "HUERSP2_4q13.1"; transcript_id "HUERSP2_4q13.1"; locus "HUERSP2_4q13.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0040"; repClass "LTR"; repEnd "3084"; repFamily "ERV1"; repLeft "213"; repStart "-4"; chr4 rmsk exon 59378171 59378301 600 - . gene_id "HUERSP2_4q13.1"; transcript_id "HUERSP2_4q13.1"; locus "HUERSP2_4q13.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0040"; repClass "LTR"; repEnd "131"; repFamily "ERV1"; repLeft "1"; repStart "-2957"; chr4 rmsk exon 59378302 59379151 4813 - . gene_id "HUERSP2_4q13.1"; transcript_id "HUERSP2_4q13.1"; locus "HUERSP2_4q13.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0040"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "15"; repStart "0"; ### HERVL_4q13.1a ### chr4 rmsk gene 59541765 59546394 . - . gene_id "HERVL_4q13.1a"; transcript_id "HERVL_4q13.1a"; locus "HERVL_4q13.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0369"; model_cov "3825"; model_pct "67.7"; chr4 rmsk exon 59541765 59545480 28413 - . gene_id "HERVL_4q13.1a"; transcript_id "HERVL_4q13.1a"; locus "HERVL_4q13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0369"; repClass "LTR"; repEnd "3828"; repFamily "ERVL"; repLeft "120"; repStart "-1826"; chr4 rmsk exon 59545766 59545883 28413 - . gene_id "HERVL_4q13.1a"; transcript_id "HERVL_4q13.1a"; locus "HERVL_4q13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0369"; repClass "LTR"; repEnd "119"; repFamily "ERVL"; repLeft "2"; repStart "-5535"; chr4 rmsk exon 59545886 59545952 339 - . gene_id "HERVL_4q13.1a"; transcript_id "HERVL_4q13.1a"; locus "HERVL_4q13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0369"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "381"; repStart "-1"; chr4 rmsk exon 59545999 59546394 3054 - . gene_id "HERVL_4q13.1a"; transcript_id "HERVL_4q13.1a"; locus "HERVL_4q13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0369"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; ### ERV316A3_4q13.1b ### chr4 rmsk gene 59678275 59681045 . + . gene_id "ERV316A3_4q13.1b"; transcript_id "ERV316A3_4q13.1b"; locus "ERV316A3_4q13.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0689"; model_cov "1960"; model_pct "37.5"; chr4 rmsk exon 59678275 59678683 1166 + . gene_id "ERV316A3_4q13.1b"; transcript_id "ERV316A3_4q13.1b"; locus "ERV316A3_4q13.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0689"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-14"; repStart "1"; chr4 rmsk exon 59678750 59679908 2147 + . gene_id "ERV316A3_4q13.1b"; transcript_id "ERV316A3_4q13.1b"; locus "ERV316A3_4q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0689"; repClass "LTR"; repEnd "1330"; repFamily "ERVL"; repLeft "-3896"; repStart "105"; chr4 rmsk exon 59680095 59680495 913 + . gene_id "ERV316A3_4q13.1b"; transcript_id "ERV316A3_4q13.1b"; locus "ERV316A3_4q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0689"; repClass "LTR"; repEnd "2242"; repFamily "ERVL"; repLeft "-2984"; repStart "1829"; chr4 rmsk exon 59680691 59681045 758 + . gene_id "ERV316A3_4q13.1b"; transcript_id "ERV316A3_4q13.1b"; locus "ERV316A3_4q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0689"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "-2954"; repStart "1950"; ### ERVLB4_4q13.1b ### chr4 rmsk gene 59687797 59690342 . + . gene_id "ERVLB4_4q13.1b"; transcript_id "ERVLB4_4q13.1b"; locus "ERVLB4_4q13.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0442"; model_cov "1249"; model_pct "21.9"; chr4 rmsk exon 59687797 59688043 335 + . gene_id "ERVLB4_4q13.1b"; transcript_id "ERVLB4_4q13.1b"; locus "ERVLB4_4q13.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0442"; repClass "LTR"; repEnd "3673"; repFamily "ERVL"; repLeft "-2041"; repStart "3422"; chr4 rmsk exon 59689408 59689875 368 + . gene_id "ERVLB4_4q13.1b"; transcript_id "ERVLB4_4q13.1b"; locus "ERVLB4_4q13.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0442"; repClass "LTR"; repEnd "4615"; repFamily "ERVL"; repLeft "-1099"; repStart "4128"; chr4 rmsk exon 59689935 59690342 401 + . gene_id "ERVLB4_4q13.1b"; transcript_id "ERVLB4_4q13.1b"; locus "ERVLB4_4q13.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0442"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "-507"; repStart "4696"; ### ERVLB4_4q13.1c ### chr4 rmsk gene 59903568 59905285 . - . gene_id "ERVLB4_4q13.1c"; transcript_id "ERVLB4_4q13.1c"; locus "ERVLB4_4q13.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0443"; model_cov "1262"; model_pct "22.1"; chr4 rmsk exon 59903568 59904009 1474 - . gene_id "ERVLB4_4q13.1c"; transcript_id "ERVLB4_4q13.1c"; locus "ERVLB4_4q13.1c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0443"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr4 rmsk exon 59904024 59904809 2437 - . gene_id "ERVLB4_4q13.1c"; transcript_id "ERVLB4_4q13.1c"; locus "ERVLB4_4q13.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0443"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "4911"; repStart "-9"; chr4 rmsk exon 59904831 59905285 2294 - . gene_id "ERVLB4_4q13.1c"; transcript_id "ERVLB4_4q13.1c"; locus "ERVLB4_4q13.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0443"; repClass "LTR"; repEnd "1043"; repFamily "ERVL"; repLeft "575"; repStart "-4671"; ### HERVL_4q13.1b ### chr4 rmsk gene 59909021 59915791 . + . gene_id "HERVL_4q13.1b"; transcript_id "HERVL_4q13.1b"; locus "HERVL_4q13.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0371"; model_cov "5582"; model_pct "98.7"; chr4 rmsk exon 59909021 59909441 2857 + . gene_id "HERVL_4q13.1b"; transcript_id "HERVL_4q13.1b"; locus "HERVL_4q13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0371"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; chr4 rmsk exon 59909561 59915101 41033 + . gene_id "HERVL_4q13.1b"; transcript_id "HERVL_4q13.1b"; locus "HERVL_4q13.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0371"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "72"; chr4 rmsk exon 59915102 59915469 2605 + . gene_id "HERVL_4q13.1b"; transcript_id "HERVL_4q13.1b"; locus "HERVL_4q13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0371"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "-77"; repStart "1"; chr4 rmsk exon 59915738 59915791 319 + . gene_id "HERVL_4q13.1b"; transcript_id "HERVL_4q13.1b"; locus "HERVL_4q13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0371"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "391"; ### ERVLE_4q13.1d ### chr4 rmsk gene 59985039 59987800 . + . gene_id "ERVLE_4q13.1d"; transcript_id "ERVLE_4q13.1d"; locus "ERVLE_4q13.1d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_0974"; model_cov "1181"; model_pct "20.8"; chr4 rmsk exon 59985039 59985144 961 + . gene_id "ERVLE_4q13.1d"; transcript_id "ERVLE_4q13.1d"; locus "ERVLE_4q13.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0974"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "-510"; repStart "42"; chr4 rmsk exon 59985171 59985684 961 + . gene_id "ERVLE_4q13.1d"; transcript_id "ERVLE_4q13.1d"; locus "ERVLE_4q13.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0974"; repClass "LTR"; repEnd "627"; repFamily "ERVL"; repLeft "-36"; repStart "154"; chr4 rmsk exon 59985838 59986969 2909 + . gene_id "ERVLE_4q13.1d"; transcript_id "ERVLE_4q13.1d"; locus "ERVLE_4q13.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0974"; repClass "LTR"; repEnd "1237"; repFamily "ERVL"; repLeft "-4430"; repStart "56"; chr4 rmsk exon 59987407 59987800 1032 + . gene_id "ERVLE_4q13.1d"; transcript_id "ERVLE_4q13.1d"; locus "ERVLE_4q13.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0974"; repClass "LTR"; repEnd "577"; repFamily "ERVL"; repLeft "-86"; repStart "179"; ### MER41_4q13.1b ### chr4 rmsk gene 59994858 59995316 . - . gene_id "MER41_4q13.1b"; transcript_id "MER41_4q13.1b"; locus "MER41_4q13.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0123"; model_cov "691"; model_pct "11.6"; chr4 rmsk exon 59994858 59995316 13437 - . gene_id "MER41_4q13.1b"; transcript_id "MER41_4q13.1b"; locus "MER41_4q13.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0123"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "5254"; repStart "-1"; ### MER41_4q13.1c ### chr4 rmsk gene 59995384 59999264 . - . gene_id "MER41_4q13.1c"; transcript_id "MER41_4q13.1c"; locus "MER41_4q13.1c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0124"; model_cov "5863"; model_pct "98.6"; chr4 rmsk exon 59995384 59999264 13437 - . gene_id "MER41_4q13.1c"; transcript_id "MER41_4q13.1c"; locus "MER41_4q13.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0124"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "82"; repStart "-1"; ### MER61_4q13.1a ### chr4 rmsk gene 59999341 59999999 . - . gene_id "MER61_4q13.1a"; transcript_id "MER61_4q13.1a"; locus "MER61_4q13.1a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0110"; model_cov "668"; model_pct "12.8"; chr4 rmsk exon 59999341 59999999 2703 - . gene_id "MER61_4q13.1a"; transcript_id "MER61_4q13.1a"; locus "MER61_4q13.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0110"; repClass "LTR"; repEnd "4801"; repFamily "ERV1"; repLeft "4133"; repStart "-416"; ### ERV316A3_4q13.1c ### chr4 rmsk gene 60613782 60618644 . + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0690"; model_cov "1611"; model_pct "30.8"; chr4 rmsk exon 60613782 60614154 999 + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0690"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 60614165 60614613 687 + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0690"; repClass "LTR"; repEnd "671"; repFamily "ERVL"; repLeft "-4555"; repStart "231"; chr4 rmsk exon 60616965 60617185 413 + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0690"; repClass "LTR"; repEnd "1045"; repFamily "ERVL"; repLeft "-4181"; repStart "820"; chr4 rmsk exon 60617445 60618111 1153 + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0690"; repClass "LTR"; repEnd "1620"; repFamily "ERVL"; repLeft "-3606"; repStart "906"; chr4 rmsk exon 60618393 60618644 1153 + . gene_id "ERV316A3_4q13.1c"; transcript_id "ERV316A3_4q13.1c"; locus "ERV316A3_4q13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0690"; repClass "LTR"; repEnd "1853"; repFamily "ERVL"; repLeft "-3373"; repStart "1621"; ### ERV316A3_4q13.1d ### chr4 rmsk gene 61049292 61051530 . - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0691"; model_cov "884"; model_pct "16.9"; chr4 rmsk exon 61049292 61049710 831 - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0691"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "9"; repStart "0"; chr4 rmsk exon 61049716 61050060 692 - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0691"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "4877"; repStart "-7"; chr4 rmsk exon 61050074 61050311 491 - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0691"; repClass "LTR"; repEnd "4791"; repFamily "ERVL"; repLeft "4555"; repStart "-435"; chr4 rmsk exon 61050888 61051173 1092 - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0691"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "3603"; repStart "-1317"; chr4 rmsk exon 61051411 61051530 442 - . gene_id "ERV316A3_4q13.1d"; transcript_id "ERV316A3_4q13.1d"; locus "ERV316A3_4q13.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0691"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "5"; repStart "-330"; ### HERVL18_4q13.1 ### chr4 rmsk gene 61424015 61428429 . - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0042"; model_cov "3858"; model_pct "63.8"; chr4 rmsk exon 61424015 61424341 1243 - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0042"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr4 rmsk exon 61424343 61426149 11426 - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0042"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4218"; repStart "0"; chr4 rmsk exon 61426130 61426461 2261 - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0042"; repClass "LTR"; repEnd "3588"; repFamily "ERVL"; repLeft "3258"; repStart "-2459"; chr4 rmsk exon 61426491 61428101 8229 - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0042"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "2"; repStart "-4346"; chr4 rmsk exon 61428111 61428429 1428 - . gene_id "HERVL18_4q13.1"; transcript_id "HERVL18_4q13.1"; locus "HERVL18_4q13.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0042"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "1"; repStart "-14"; ### HERVH_4q13.1 ### chr4 rmsk gene 61764218 61770025 . - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0372"; model_cov "4916"; model_pct "63.7"; chr4 rmsk exon 61764218 61764699 3184 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 61764700 61765074 2475 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 61765073 61765288 1405 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 61765290 61765986 4075 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 61765989 61766494 3287 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 61766485 61766634 993 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 61766614 61769540 19940 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 61769543 61770025 3065 - . gene_id "HERVH_4q13.1"; transcript_id "HERVH_4q13.1"; locus "HERVH_4q13.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0372"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_4q13.1 ### chr4 rmsk gene 61833284 61836083 . - . gene_id "HUERSP1_4q13.1"; transcript_id "HUERSP1_4q13.1"; locus "HUERSP1_4q13.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0057"; model_cov "1238"; model_pct "19.8"; chr4 rmsk exon 61833284 61833958 4756 - . gene_id "HUERSP1_4q13.1"; transcript_id "HUERSP1_4q13.1"; locus "HUERSP1_4q13.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0057"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr4 rmsk exon 61834544 61836083 7858 - . gene_id "HUERSP1_4q13.1"; transcript_id "HUERSP1_4q13.1"; locus "HUERSP1_4q13.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0057"; repClass "LTR"; repEnd "2727"; repFamily "ERV1"; repLeft "1489"; repStart "-3536"; ### HERVL_4q13.1c ### chr4 rmsk gene 62161515 62167059 . + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0372"; model_cov "3921"; model_pct "69.3"; chr4 rmsk exon 62161515 62161959 3130 + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0372"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 62161960 62164683 20790 + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0372"; repClass "LTR"; repEnd "2728"; repFamily "ERVL"; repLeft "-2926"; repStart "1"; chr4 rmsk exon 62165432 62165493 20790 + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0372"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "-2867"; repStart "2729"; chr4 rmsk exon 62165482 62166601 8566 + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0372"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4518"; chr4 rmsk exon 62166602 62167059 3233 + . gene_id "HERVL_4q13.1c"; transcript_id "HERVL_4q13.1c"; locus "HERVL_4q13.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0372"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4q13.1e ### chr4 rmsk gene 62194774 62197305 . + . gene_id "ERVLE_4q13.1e"; transcript_id "ERVLE_4q13.1e"; locus "ERVLE_4q13.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0975"; model_cov "1700"; model_pct "30.0"; chr4 rmsk exon 62194774 62195018 315 + . gene_id "ERVLE_4q13.1e"; transcript_id "ERVLE_4q13.1e"; locus "ERVLE_4q13.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0975"; repClass "LTR"; repEnd "3792"; repFamily "ERVL"; repLeft "-1875"; repStart "3549"; chr4 rmsk exon 62195831 62197305 1702 + . gene_id "ERVLE_4q13.1e"; transcript_id "ERVLE_4q13.1e"; locus "ERVLE_4q13.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0975"; repClass "LTR"; repEnd "5601"; repFamily "ERVL"; repLeft "-66"; repStart "4144"; ### ERVLE_4q13.1f ### chr4 rmsk gene 62391836 62393360 . - . gene_id "ERVLE_4q13.1f"; transcript_id "ERVLE_4q13.1f"; locus "ERVLE_4q13.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0976"; model_cov "927"; model_pct "16.4"; chr4 rmsk exon 62391836 62392094 754 - . gene_id "ERVLE_4q13.1f"; transcript_id "ERVLE_4q13.1f"; locus "ERVLE_4q13.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0976"; repClass "LTR"; repEnd "2341"; repFamily "ERVL"; repLeft "2082"; repStart "-3326"; chr4 rmsk exon 62392700 62392802 276 - . gene_id "ERVLE_4q13.1f"; transcript_id "ERVLE_4q13.1f"; locus "ERVLE_4q13.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0976"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "2157"; repStart "-3412"; chr4 rmsk exon 62392824 62392939 309 - . gene_id "ERVLE_4q13.1f"; transcript_id "ERVLE_4q13.1f"; locus "ERVLE_4q13.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0976"; repClass "LTR"; repEnd "1829"; repFamily "ERVL"; repLeft "1634"; repStart "-3838"; chr4 rmsk exon 62393007 62393360 625 - . gene_id "ERVLE_4q13.1f"; transcript_id "ERVLE_4q13.1f"; locus "ERVLE_4q13.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0976"; repClass "LTR"; repEnd "1533"; repFamily "ERVL"; repLeft "1158"; repStart "-4134"; ### HERVL_4q13.1d ### chr4 rmsk gene 62417950 62424697 . - . gene_id "HERVL_4q13.1d"; transcript_id "HERVL_4q13.1d"; locus "HERVL_4q13.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0373"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 62417950 62418497 1949 - . gene_id "HERVL_4q13.1d"; transcript_id "HERVL_4q13.1d"; locus "HERVL_4q13.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0373"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr4 rmsk exon 62418498 62424151 38434 - . gene_id "HERVL_4q13.1d"; transcript_id "HERVL_4q13.1d"; locus "HERVL_4q13.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0373"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 62424152 62424697 1957 - . gene_id "HERVL_4q13.1d"; transcript_id "HERVL_4q13.1d"; locus "HERVL_4q13.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0373"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERV316A3_4q13.1e ### chr4 rmsk gene 62516313 62517430 . - . gene_id "ERV316A3_4q13.1e"; transcript_id "ERV316A3_4q13.1e"; locus "ERV316A3_4q13.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0692"; model_cov "1036"; model_pct "19.8"; chr4 rmsk exon 62516313 62517125 1251 - . gene_id "ERV316A3_4q13.1e"; transcript_id "ERV316A3_4q13.1e"; locus "ERV316A3_4q13.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0692"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "4062"; repStart "-318"; chr4 rmsk exon 62517245 62517430 809 - . gene_id "ERV316A3_4q13.1e"; transcript_id "ERV316A3_4q13.1e"; locus "ERV316A3_4q13.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0692"; repClass "LTR"; repEnd "4046"; repFamily "ERVL"; repLeft "3856"; repStart "-1180"; ### ERVLE_4q13.1g ### chr4 rmsk gene 62831543 62835350 . - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0977"; model_cov "2796"; model_pct "49.3"; chr4 rmsk exon 62831543 62831897 1170 - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_0977"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "6"; repStart "-264"; chr4 rmsk exon 62831904 62832030 360 - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0977"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5533"; repStart "0"; chr4 rmsk exon 62832239 62834105 3276 - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0977"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "1777"; repStart "-1798"; chr4 rmsk exon 62834410 62834598 3276 - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0977"; repClass "LTR"; repEnd "1852"; repFamily "ERVL"; repLeft "1671"; repStart "-3815"; chr4 rmsk exon 62835034 62835350 3276 - . gene_id "ERVLE_4q13.1g"; transcript_id "ERVLE_4q13.1g"; locus "ERVLE_4q13.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0977"; repClass "LTR"; repEnd "1670"; repFamily "ERVL"; repLeft "1281"; repStart "-3997"; ### ERVLB4_4q13.1d ### chr4 rmsk gene 62866918 62868079 . + . gene_id "ERVLB4_4q13.1d"; transcript_id "ERVLB4_4q13.1d"; locus "ERVLB4_4q13.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0445"; model_cov "664"; model_pct "11.6"; chr4 rmsk exon 62866918 62867188 1669 + . gene_id "ERVLB4_4q13.1d"; transcript_id "ERVLB4_4q13.1d"; locus "ERVLB4_4q13.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0445"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-71"; repStart "160"; chr4 rmsk exon 62867443 62868079 3443 + . gene_id "ERVLB4_4q13.1d"; transcript_id "ERVLB4_4q13.1d"; locus "ERVLB4_4q13.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0445"; repClass "LTR"; repEnd "665"; repFamily "ERVL"; repLeft "-5049"; repStart "1"; ### ERVLB4_4q13.1e ### chr4 rmsk gene 62871949 62872914 . + . gene_id "ERVLB4_4q13.1e"; transcript_id "ERVLB4_4q13.1e"; locus "ERVLB4_4q13.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0446"; model_cov "1134"; model_pct "19.8"; chr4 rmsk exon 62871949 62872914 761 + . gene_id "ERVLB4_4q13.1e"; transcript_id "ERVLB4_4q13.1e"; locus "ERVLB4_4q13.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0446"; repClass "LTR"; repEnd "2713"; repFamily "ERVL"; repLeft "-3001"; repStart "1579"; ### ERVLE_4q13.1h ### chr4 rmsk gene 62879122 62879773 . + . gene_id "ERVLE_4q13.1h"; transcript_id "ERVLE_4q13.1h"; locus "ERVLE_4q13.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0978"; model_cov "606"; model_pct "10.7"; chr4 rmsk exon 62879122 62879354 598 + . gene_id "ERVLE_4q13.1h"; transcript_id "ERVLE_4q13.1h"; locus "ERVLE_4q13.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0978"; repClass "LTR"; repEnd "3035"; repFamily "ERVL"; repLeft "-2632"; repStart "2797"; chr4 rmsk exon 62879418 62879773 332 + . gene_id "ERVLE_4q13.1h"; transcript_id "ERVLE_4q13.1h"; locus "ERVLE_4q13.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0978"; repClass "LTR"; repEnd "3619"; repFamily "ERVL"; repLeft "-2048"; repStart "3251"; ### HERVW_4q13.1a ### chr4 rmsk gene 62971017 62973703 . + . gene_id "HERVW_4q13.1a"; transcript_id "HERVW_4q13.1a"; locus "HERVW_4q13.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0092"; model_cov "1704"; model_pct "19.8"; chr4 rmsk exon 62971017 62971771 4897 + . gene_id "HERVW_4q13.1a"; transcript_id "HERVW_4q13.1a"; locus "HERVW_4q13.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0092"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 62971776 62972498 5004 + . gene_id "HERVW_4q13.1a"; transcript_id "HERVW_4q13.1a"; locus "HERVW_4q13.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0092"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "-7917"; repStart "4"; chr4 rmsk exon 62972767 62973703 6882 + . gene_id "HERVW_4q13.1a"; transcript_id "HERVW_4q13.1a"; locus "HERVW_4q13.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0092"; repClass "LTR"; repEnd "5393"; repFamily "ERV1"; repLeft "-3233"; repStart "4394"; ### HERVW_4q13.1b ### chr4 rmsk gene 62974410 62977760 . + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0093"; model_cov "2573"; model_pct "29.8"; chr4 rmsk exon 62974410 62974946 6882 + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0093"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "-6622"; repStart "1537"; chr4 rmsk exon 62974941 62976605 13159 + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0093"; repClass "LTR"; repEnd "4248"; repFamily "ERV1"; repLeft "-4378"; repStart "2574"; chr4 rmsk exon 62976576 62976717 1062 + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0093"; repClass "LTR"; repEnd "7545"; repFamily "ERV1"; repLeft "-1081"; repStart "7404"; chr4 rmsk exon 62976711 62977002 2255 + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0093"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr4 rmsk exon 62977003 62977760 4908 + . gene_id "HERVW_4q13.1b"; transcript_id "HERVW_4q13.1b"; locus "HERVW_4q13.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0093"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q13.1i ### chr4 rmsk gene 63031618 63032233 . - . gene_id "ERVLE_4q13.1i"; transcript_id "ERVLE_4q13.1i"; locus "ERVLE_4q13.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0979"; model_cov "629"; model_pct "11.1"; chr4 rmsk exon 63031618 63032233 897 - . gene_id "ERVLE_4q13.1i"; transcript_id "ERVLE_4q13.1i"; locus "ERVLE_4q13.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0979"; repClass "LTR"; repEnd "3394"; repFamily "ERVL"; repLeft "2765"; repStart "-2273"; ### HERV9_4q13.1a ### chr4 rmsk gene 63052532 63062525 . + . gene_id "HERV9_4q13.1a"; transcript_id "HERV9_4q13.1a"; locus "HERV9_4q13.1a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0042"; model_cov "8435"; model_pct "100.0"; chr4 rmsk exon 63052532 63053403 4819 + . gene_id "HERV9_4q13.1a"; transcript_id "HERV9_4q13.1a"; locus "HERV9_4q13.1a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0042"; repClass "LTR"; repEnd "1241"; repFamily "ERV1"; repLeft "-13"; repStart "384"; chr4 rmsk exon 63053404 63061745 50549 + . gene_id "HERV9_4q13.1a"; transcript_id "HERV9_4q13.1a"; locus "HERV9_4q13.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0042"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 63061746 63062525 4484 + . gene_id "HERV9_4q13.1a"; transcript_id "HERV9_4q13.1a"; locus "HERV9_4q13.1a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0042"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "429"; ### ERV316A3_4q13.1f ### chr4 rmsk gene 63088768 63089735 . - . gene_id "ERV316A3_4q13.1f"; transcript_id "ERV316A3_4q13.1f"; locus "ERV316A3_4q13.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0694"; model_cov "623"; model_pct "11.9"; chr4 rmsk exon 63088768 63089172 1003 - . gene_id "ERV316A3_4q13.1f"; transcript_id "ERV316A3_4q13.1f"; locus "ERV316A3_4q13.1f"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0694"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "13"; repStart "-6"; chr4 rmsk exon 63089263 63089735 423 - . gene_id "ERV316A3_4q13.1f"; transcript_id "ERV316A3_4q13.1f"; locus "ERV316A3_4q13.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0694"; repClass "LTR"; repEnd "4806"; repFamily "ERVL"; repLeft "4183"; repStart "-420"; ### ERV316A3_4q13.1g ### chr4 rmsk gene 63162004 63163197 . + . gene_id "ERV316A3_4q13.1g"; transcript_id "ERV316A3_4q13.1g"; locus "ERV316A3_4q13.1g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0695"; model_cov "1021"; model_pct "19.5"; chr4 rmsk exon 63162004 63162213 339 + . gene_id "ERV316A3_4q13.1g"; transcript_id "ERV316A3_4q13.1g"; locus "ERV316A3_4q13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0695"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "-1317"; repStart "3685"; chr4 rmsk exon 63162496 63163197 1327 + . gene_id "ERV316A3_4q13.1g"; transcript_id "ERV316A3_4q13.1g"; locus "ERV316A3_4q13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0695"; repClass "LTR"; repEnd "4477"; repFamily "ERVL"; repLeft "-749"; repStart "3680"; ### HERV9_4q13.1b ### chr4 rmsk gene 63190356 63193079 . + . gene_id "HERV9_4q13.1b"; transcript_id "HERV9_4q13.1b"; locus "HERV9_4q13.1b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0043"; model_cov "2087"; model_pct "24.7"; chr4 rmsk exon 63190356 63192450 16247 + . gene_id "HERV9_4q13.1b"; transcript_id "HERV9_4q13.1b"; locus "HERV9_4q13.1b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0043"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6349"; chr4 rmsk exon 63192451 63193079 3980 + . gene_id "HERV9_4q13.1b"; transcript_id "HERV9_4q13.1b"; locus "HERV9_4q13.1b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0043"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "-123"; repStart "370"; ### MER101_4q13.1 ### chr4 rmsk gene 63411986 63412445 . - . gene_id "MER101_4q13.1"; transcript_id "MER101_4q13.1"; locus "MER101_4q13.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0118"; model_cov "807"; model_pct "12.2"; chr4 rmsk exon 63411986 63412445 641 - . gene_id "MER101_4q13.1"; transcript_id "MER101_4q13.1"; locus "MER101_4q13.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0118"; repClass "LTR"; repEnd "2376"; repFamily "ERV1"; repLeft "1569"; repStart "-4263"; ### ERVLE_4q13.1j ### chr4 rmsk gene 63439565 63440728 . - . gene_id "ERVLE_4q13.1j"; transcript_id "ERVLE_4q13.1j"; locus "ERVLE_4q13.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0982"; model_cov "1274"; model_pct "22.5"; chr4 rmsk exon 63439565 63440728 1212 - . gene_id "ERVLE_4q13.1j"; transcript_id "ERVLE_4q13.1j"; locus "ERVLE_4q13.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0982"; repClass "LTR"; repEnd "4302"; repFamily "ERVL"; repLeft "3028"; repStart "-1365"; ### ERVLB4_4q13.1f ### chr4 rmsk gene 63470839 63472808 . + . gene_id "ERVLB4_4q13.1f"; transcript_id "ERVLB4_4q13.1f"; locus "ERVLB4_4q13.1f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0448"; model_cov "1993"; model_pct "34.9"; chr4 rmsk exon 63470839 63472808 10772 + . gene_id "ERVLB4_4q13.1f"; transcript_id "ERVLB4_4q13.1f"; locus "ERVLB4_4q13.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0448"; repClass "LTR"; repEnd "4200"; repFamily "ERVL"; repLeft "-1514"; repStart "2207"; ### HERVL_4q13.1e ### chr4 rmsk gene 63564437 63573316 . + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0375"; model_cov "5661"; model_pct "100.0"; chr4 rmsk exon 63564437 63564945 1855 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-49"; repStart "-100"; chr4 rmsk exon 63565009 63565047 1370 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "405"; chr4 rmsk exon 63565048 63567823 35992 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "2819"; repFamily "ERVL"; repLeft "-2835"; repStart "1"; chr4 rmsk exon 63567881 63570510 35992 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "5492"; repFamily "ERVL"; repLeft "-162"; repStart "2820"; chr4 rmsk exon 63572599 63572770 854 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5483"; chr4 rmsk exon 63572771 63573316 1894 + . gene_id "HERVL_4q13.1e"; transcript_id "HERVL_4q13.1e"; locus "HERVL_4q13.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0375"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLB4_4q13.1g ### chr4 rmsk gene 63649491 63651135 . + . gene_id "ERVLB4_4q13.1g"; transcript_id "ERVLB4_4q13.1g"; locus "ERVLB4_4q13.1g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0449"; model_cov "1534"; model_pct "26.8"; chr4 rmsk exon 63649491 63649768 518 + . gene_id "ERVLB4_4q13.1g"; transcript_id "ERVLB4_4q13.1g"; locus "ERVLB4_4q13.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0449"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-4106"; repStart "1327"; chr4 rmsk exon 63649951 63651135 1370 + . gene_id "ERVLB4_4q13.1g"; transcript_id "ERVLB4_4q13.1g"; locus "ERVLB4_4q13.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0449"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "-2612"; repStart "1849"; ### ERV316A3_4q13.1h ### chr4 rmsk gene 63776454 63778380 . - . gene_id "ERV316A3_4q13.1h"; transcript_id "ERV316A3_4q13.1h"; locus "ERV316A3_4q13.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0699"; model_cov "1098"; model_pct "21.0"; chr4 rmsk exon 63776454 63776649 566 - . gene_id "ERV316A3_4q13.1h"; transcript_id "ERV316A3_4q13.1h"; locus "ERV316A3_4q13.1h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0699"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "239"; repStart "0"; chr4 rmsk exon 63776977 63777195 566 - . gene_id "ERV316A3_4q13.1h"; transcript_id "ERV316A3_4q13.1h"; locus "ERV316A3_4q13.1h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0699"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "30"; repStart "-218"; chr4 rmsk exon 63777244 63777649 647 - . gene_id "ERV316A3_4q13.1h"; transcript_id "ERV316A3_4q13.1h"; locus "ERV316A3_4q13.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0699"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "4802"; repStart "-28"; chr4 rmsk exon 63777728 63778380 935 - . gene_id "ERV316A3_4q13.1h"; transcript_id "ERV316A3_4q13.1h"; locus "ERV316A3_4q13.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0699"; repClass "LTR"; repEnd "4347"; repFamily "ERVL"; repLeft "3645"; repStart "-879"; ### ERVLE_4q13.1k ### chr4 rmsk gene 63890382 63892433 . - . gene_id "ERVLE_4q13.1k"; transcript_id "ERVLE_4q13.1k"; locus "ERVLE_4q13.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0984"; model_cov "1323"; model_pct "23.3"; chr4 rmsk exon 63890382 63890600 404 - . gene_id "ERVLE_4q13.1k"; transcript_id "ERVLE_4q13.1k"; locus "ERVLE_4q13.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0984"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "4171"; repStart "-1270"; chr4 rmsk exon 63890980 63891189 1082 - . gene_id "ERVLE_4q13.1k"; transcript_id "ERVLE_4q13.1k"; locus "ERVLE_4q13.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0984"; repClass "LTR"; repEnd "3403"; repFamily "ERVL"; repLeft "3201"; repStart "-2264"; chr4 rmsk exon 63891486 63891963 1082 - . gene_id "ERVLE_4q13.1k"; transcript_id "ERVLE_4q13.1k"; locus "ERVLE_4q13.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0984"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "2702"; repStart "-2467"; chr4 rmsk exon 63892054 63892433 509 - . gene_id "ERVLE_4q13.1k"; transcript_id "ERVLE_4q13.1k"; locus "ERVLE_4q13.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0984"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "2092"; repStart "-3178"; ### ERVLB4_4q13.1h ### chr4 rmsk gene 63908927 63910693 . - . gene_id "ERVLB4_4q13.1h"; transcript_id "ERVLB4_4q13.1h"; locus "ERVLB4_4q13.1h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0450"; model_cov "1502"; model_pct "26.3"; chr4 rmsk exon 63908927 63909247 1133 - . gene_id "ERVLB4_4q13.1h"; transcript_id "ERVLB4_4q13.1h"; locus "ERVLB4_4q13.1h"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0450"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "8"; repStart "-48"; chr4 rmsk exon 63909264 63909957 2913 - . gene_id "ERVLB4_4q13.1h"; transcript_id "ERVLB4_4q13.1h"; locus "ERVLB4_4q13.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0450"; repClass "LTR"; repEnd "5704"; repFamily "ERVL"; repLeft "4972"; repStart "-10"; chr4 rmsk exon 63909944 63910693 3050 - . gene_id "ERVLB4_4q13.1h"; transcript_id "ERVLB4_4q13.1h"; locus "ERVLB4_4q13.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0450"; repClass "LTR"; repEnd "2143"; repFamily "ERVL"; repLeft "1373"; repStart "-3571"; ### ERV316A3_4q13.1i ### chr4 rmsk gene 63970511 63973278 . - . gene_id "ERV316A3_4q13.1i"; transcript_id "ERV316A3_4q13.1i"; locus "ERV316A3_4q13.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0701"; model_cov "1641"; model_pct "31.4"; chr4 rmsk exon 63970511 63970809 505 - . gene_id "ERV316A3_4q13.1i"; transcript_id "ERV316A3_4q13.1i"; locus "ERV316A3_4q13.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0701"; repClass "LTR"; repEnd "1671"; repFamily "ERVL"; repLeft "1383"; repStart "-3555"; chr4 rmsk exon 63970937 63971085 371 - . gene_id "ERV316A3_4q13.1i"; transcript_id "ERV316A3_4q13.1i"; locus "ERV316A3_4q13.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0701"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "1451"; repStart "-3618"; chr4 rmsk exon 63971644 63972822 2133 - . gene_id "ERV316A3_4q13.1i"; transcript_id "ERV316A3_4q13.1i"; locus "ERV316A3_4q13.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0701"; repClass "LTR"; repEnd "1203"; repFamily "ERVL"; repLeft "7"; repStart "-4023"; chr4 rmsk exon 63972826 63973278 1257 - . gene_id "ERV316A3_4q13.1i"; transcript_id "ERV316A3_4q13.1i"; locus "ERV316A3_4q13.1i"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0701"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "3"; repStart "-8"; ### MER4B_4q13.1a ### chr4 rmsk gene 64000553 64002823 . - . gene_id "MER4B_4q13.1a"; transcript_id "MER4B_4q13.1a"; locus "MER4B_4q13.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0119"; model_cov "1627"; model_pct "24.1"; chr4 rmsk exon 64000553 64002059 4614 - . gene_id "MER4B_4q13.1a"; transcript_id "MER4B_4q13.1a"; locus "MER4B_4q13.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0119"; repClass "LTR"; repEnd "811"; repFamily "ERV1"; repLeft "-816"; repStart "-5947"; chr4 rmsk exon 64002060 64002823 4846 - . gene_id "MER4B_4q13.1a"; transcript_id "MER4B_4q13.1a"; locus "MER4B_4q13.1a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0119"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_4q13.1i ### chr4 rmsk gene 64070340 64073236 . + . gene_id "ERVLB4_4q13.1i"; transcript_id "ERVLB4_4q13.1i"; locus "ERVLB4_4q13.1i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0451"; model_cov "1778"; model_pct "31.1"; chr4 rmsk exon 64070340 64070464 407 + . gene_id "ERVLB4_4q13.1i"; transcript_id "ERVLB4_4q13.1i"; locus "ERVLB4_4q13.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0451"; repClass "LTR"; repEnd "1699"; repFamily "ERVL"; repLeft "-4015"; repStart "1562"; chr4 rmsk exon 64071633 64073236 3047 + . gene_id "ERVLB4_4q13.1i"; transcript_id "ERVLB4_4q13.1i"; locus "ERVLB4_4q13.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0451"; repClass "LTR"; repEnd "3385"; repFamily "ERVL"; repLeft "-2329"; repStart "1744"; ### ERVLB4_4q13.1j ### chr4 rmsk gene 64076695 64077895 . + . gene_id "ERVLB4_4q13.1j"; transcript_id "ERVLB4_4q13.1j"; locus "ERVLB4_4q13.1j"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0452"; model_cov "1172"; model_pct "20.5"; chr4 rmsk exon 64076695 64077895 974 + . gene_id "ERVLB4_4q13.1j"; transcript_id "ERVLB4_4q13.1j"; locus "ERVLB4_4q13.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0452"; repClass "LTR"; repEnd "5009"; repFamily "ERVL"; repLeft "-705"; repStart "3837"; ### HERVK11_4q13.1 ### chr4 rmsk gene 64142030 64148096 . - . gene_id "HERVK11_4q13.1"; transcript_id "HERVK11_4q13.1"; locus "HERVK11_4q13.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0025"; model_cov "4790"; model_pct "60.2"; chr4 rmsk exon 64142030 64142260 1278 - . gene_id "HERVK11_4q13.1"; transcript_id "HERVK11_4q13.1"; locus "HERVK11_4q13.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0025"; repClass "LTR"; repEnd "326"; repFamily "ERVK"; repLeft "1"; repStart "-940"; chr4 rmsk exon 64142261 64146353 31773 - . gene_id "HERVK11_4q13.1"; transcript_id "HERVK11_4q13.1"; locus "HERVK11_4q13.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0025"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "3850"; repStart "0"; chr4 rmsk exon 64146358 64147036 4665 - . gene_id "HERVK11_4q13.1"; transcript_id "HERVK11_4q13.1"; locus "HERVK11_4q13.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0025"; repClass "LTR"; repEnd "688"; repFamily "ERVK"; repLeft "1"; repStart "-7265"; chr4 rmsk exon 64147037 64148096 4622 - . gene_id "HERVK11_4q13.1"; transcript_id "HERVK11_4q13.1"; locus "HERVK11_4q13.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0025"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_4q13.1a ### chr4 rmsk gene 64229529 64232344 . - . gene_id "LTR25_4q13.1a"; transcript_id "LTR25_4q13.1a"; locus "LTR25_4q13.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0034"; model_cov "2767"; model_pct "38.5"; chr4 rmsk exon 64229529 64232344 8149 - . gene_id "LTR25_4q13.1a"; transcript_id "LTR25_4q13.1a"; locus "LTR25_4q13.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0034"; repClass "LTR"; repEnd "2795"; repFamily "ERV1"; repLeft "28"; repStart "-4393"; ### MER41_4q13.1d ### chr4 rmsk gene 64261256 64268352 . - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0125"; model_cov "5501"; model_pct "92.5"; chr4 rmsk exon 64261256 64261330 526 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0125"; repClass "LTR"; repEnd "77"; repFamily "ERV1"; repLeft "1"; repStart "-557"; chr4 rmsk exon 64261331 64263517 11221 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "2860"; repStart "-2"; chr4 rmsk exon 64263509 64264228 3130 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "2783"; repFamily "ERV1"; repLeft "1846"; repStart "-3163"; chr4 rmsk exon 64264224 64264341 394 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1866"; repStart "-3932"; chr4 rmsk exon 64264309 64264935 3246 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "112"; repStart "-5138"; chr4 rmsk exon 64264922 64265525 3468 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "640"; repFamily "ERV1"; repLeft "42"; repStart "-5306"; chr4 rmsk exon 64267816 64267859 3468 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0125"; repClass "LTR"; repEnd "41"; repFamily "ERV1"; repLeft "3"; repStart "-5905"; chr4 rmsk exon 64267860 64268352 2732 - . gene_id "MER41_4q13.1d"; transcript_id "MER41_4q13.1d"; locus "MER41_4q13.1d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0125"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q13.1j ### chr4 rmsk gene 64282949 64285389 . + . gene_id "ERV316A3_4q13.1j"; transcript_id "ERV316A3_4q13.1j"; locus "ERV316A3_4q13.1j"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0702"; model_cov "1536"; model_pct "29.4"; chr4 rmsk exon 64282949 64283326 491 + . gene_id "ERV316A3_4q13.1j"; transcript_id "ERV316A3_4q13.1j"; locus "ERV316A3_4q13.1j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0702"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "15"; chr4 rmsk exon 64283592 64284983 1316 + . gene_id "ERV316A3_4q13.1j"; transcript_id "ERV316A3_4q13.1j"; locus "ERV316A3_4q13.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0702"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3122"; repStart "568"; chr4 rmsk exon 64285145 64285389 538 + . gene_id "ERV316A3_4q13.1j"; transcript_id "ERV316A3_4q13.1j"; locus "ERV316A3_4q13.1j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0702"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "-90"; repStart "91"; ### LTR25_4q13.1b ### chr4 rmsk gene 64306048 64307997 . + . gene_id "LTR25_4q13.1b"; transcript_id "LTR25_4q13.1b"; locus "LTR25_4q13.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0035"; model_cov "2051"; model_pct "28.5"; chr4 rmsk exon 64306048 64306994 2906 + . gene_id "LTR25_4q13.1b"; transcript_id "LTR25_4q13.1b"; locus "LTR25_4q13.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0035"; repClass "LTR"; repEnd "998"; repFamily "ERV1"; repLeft "-6190"; repStart "3"; chr4 rmsk exon 64307280 64307663 1423 + . gene_id "LTR25_4q13.1b"; transcript_id "LTR25_4q13.1b"; locus "LTR25_4q13.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0035"; repClass "LTR"; repEnd "1763"; repFamily "ERV1"; repLeft "-5425"; repStart "1007"; chr4 rmsk exon 64307698 64307997 1541 + . gene_id "LTR25_4q13.1b"; transcript_id "LTR25_4q13.1b"; locus "LTR25_4q13.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0035"; repClass "LTR"; repEnd "2565"; repFamily "ERV1"; repLeft "-4623"; repStart "2265"; ### MER4B_4q13.1b ### chr4 rmsk gene 64442683 64446236 . - . gene_id "MER4B_4q13.1b"; transcript_id "MER4B_4q13.1b"; locus "MER4B_4q13.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0120"; model_cov "2542"; model_pct "37.6"; chr4 rmsk exon 64442683 64442846 259 - . gene_id "MER4B_4q13.1b"; transcript_id "MER4B_4q13.1b"; locus "MER4B_4q13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0120"; repClass "LTR"; repEnd "2089"; repFamily "ERV1"; repLeft "1926"; repStart "-4669"; chr4 rmsk exon 64442960 64444199 1030 - . gene_id "MER4B_4q13.1b"; transcript_id "MER4B_4q13.1b"; locus "MER4B_4q13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0120"; repClass "LTR"; repEnd "1766"; repFamily "ERV1"; repLeft "636"; repStart "-4992"; chr4 rmsk exon 64444379 64445481 4050 - . gene_id "MER4B_4q13.1b"; transcript_id "MER4B_4q13.1b"; locus "MER4B_4q13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0120"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "-816"; repStart "-6325"; chr4 rmsk exon 64445482 64446236 5201 - . gene_id "MER4B_4q13.1b"; transcript_id "MER4B_4q13.1b"; locus "MER4B_4q13.1b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0120"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_4q13.1 ### chr4 rmsk gene 64562635 64569783 . + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0058"; model_cov "6222"; model_pct "100.0"; chr4 rmsk exon 64562635 64563105 3189 + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0058"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 64563106 64568305 40220 + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0058"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "-825"; repStart "1"; chr4 rmsk exon 64568280 64568495 560 + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0058"; repClass "LTR"; repEnd "4257"; repFamily "ERVK"; repLeft "-1764"; repStart "4043"; chr4 rmsk exon 64568509 64569327 6201 + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0058"; repClass "LTR"; repEnd "6006"; repFamily "ERVK"; repLeft "-15"; repStart "5193"; chr4 rmsk exon 64569331 64569783 3051 + . gene_id "HML3_4q13.1"; transcript_id "HML3_4q13.1"; locus "HML3_4q13.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0058"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "20"; ### ERVLB4_4q13.1k ### chr4 rmsk gene 64588950 64591672 . - . gene_id "ERVLB4_4q13.1k"; transcript_id "ERVLB4_4q13.1k"; locus "ERVLB4_4q13.1k"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0453"; model_cov "637"; model_pct "11.1"; chr4 rmsk exon 64588950 64589243 787 - . gene_id "ERVLB4_4q13.1k"; transcript_id "ERVLB4_4q13.1k"; locus "ERVLB4_4q13.1k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0453"; repClass "LTR"; repEnd "5070"; repFamily "ERVL"; repLeft "4774"; repStart "-644"; chr4 rmsk exon 64591285 64591525 741 - . gene_id "ERVLB4_4q13.1k"; transcript_id "ERVLB4_4q13.1k"; locus "ERVLB4_4q13.1k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0453"; repClass "LTR"; repEnd "4427"; repFamily "ERVL"; repLeft "4191"; repStart "-1287"; chr4 rmsk exon 64591567 64591672 306 - . gene_id "ERVLB4_4q13.1k"; transcript_id "ERVLB4_4q13.1k"; locus "ERVLB4_4q13.1k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0453"; repClass "LTR"; repEnd "4032"; repFamily "ERVL"; repLeft "3927"; repStart "-1682"; ### HML5_4q13.1 ### chr4 rmsk gene 64623018 64625587 . - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0030"; model_cov "1592"; model_pct "23.3"; chr4 rmsk exon 64623018 64623480 2476 - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0030"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 64623481 64623740 1249 - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0030"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "6657"; repStart "0"; chr4 rmsk exon 64623744 64624339 4228 - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0030"; repClass "LTR"; repEnd "2930"; repFamily "ERVK"; repLeft "2328"; repStart "-3907"; chr4 rmsk exon 64624334 64625137 5126 - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0030"; repClass "LTR"; repEnd "811"; repFamily "ERVK"; repLeft "1"; repStart "-6026"; chr4 rmsk exon 64625138 64625587 2543 - . gene_id "HML5_4q13.1"; transcript_id "HML5_4q13.1"; locus "HML5_4q13.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0030"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_4q13.1f ### chr4 rmsk gene 64672072 64678541 . - . gene_id "HERVL_4q13.1f"; transcript_id "HERVL_4q13.1f"; locus "HERVL_4q13.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0376"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 64672072 64672448 2683 - . gene_id "HERVL_4q13.1f"; transcript_id "HERVL_4q13.1f"; locus "HERVL_4q13.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0376"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "1"; repStart "-74"; chr4 rmsk exon 64672449 64678088 42255 - . gene_id "HERVL_4q13.1f"; transcript_id "HERVL_4q13.1f"; locus "HERVL_4q13.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0376"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 64678089 64678541 2820 - . gene_id "HERVL_4q13.1f"; transcript_id "HERVL_4q13.1f"; locus "HERVL_4q13.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0376"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP3_4q13.1 ### chr4 rmsk gene 64712680 64719516 . - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0050"; model_cov "6987"; model_pct "78.3"; chr4 rmsk exon 64712680 64713035 1673 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "411"; repFamily "ERV1"; repLeft "1"; repStart "-255"; chr4 rmsk exon 64713100 64713369 1278 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "8899"; repFamily "ERV1"; repLeft "8701"; repStart "-20"; chr4 rmsk exon 64713828 64713928 369 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "6971"; repFamily "ERV1"; repLeft "6874"; repStart "-1948"; chr4 rmsk exon 64713940 64715925 12866 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "4901"; repStart "-2007"; chr4 rmsk exon 64715927 64718914 7430 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "1"; repStart "-4237"; chr4 rmsk exon 64718916 64719516 2548 - . gene_id "HUERSP3_4q13.1"; transcript_id "HUERSP3_4q13.1"; locus "HUERSP3_4q13.1"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0050"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_4q13.1b ### chr4 rmsk gene 64953366 64957440 . + . gene_id "MER61_4q13.1b"; transcript_id "MER61_4q13.1b"; locus "MER61_4q13.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0112"; model_cov "3843"; model_pct "73.7"; chr4 rmsk exon 64953366 64953696 1747 + . gene_id "MER61_4q13.1b"; transcript_id "MER61_4q13.1b"; locus "MER61_4q13.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0112"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 64953698 64954435 3042 + . gene_id "MER61_4q13.1b"; transcript_id "MER61_4q13.1b"; locus "MER61_4q13.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0112"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr4 rmsk exon 64954429 64957440 20030 + . gene_id "MER61_4q13.1b"; transcript_id "MER61_4q13.1b"; locus "MER61_4q13.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0112"; repClass "LTR"; repEnd "4387"; repFamily "ERV1"; repLeft "-830"; repStart "1320"; ### ERV316A3_4q13.1k ### chr4 rmsk gene 65061530 65065243 . - . gene_id "ERV316A3_4q13.1k"; transcript_id "ERV316A3_4q13.1k"; locus "ERV316A3_4q13.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0703"; model_cov "3308"; model_pct "63.3"; chr4 rmsk exon 65061530 65061936 1188 - . gene_id "ERV316A3_4q13.1k"; transcript_id "ERV316A3_4q13.1k"; locus "ERV316A3_4q13.1k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0703"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "5"; repStart "-31"; chr4 rmsk exon 65062026 65062277 587 - . gene_id "ERV316A3_4q13.1k"; transcript_id "ERV316A3_4q13.1k"; locus "ERV316A3_4q13.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0703"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "4862"; repStart "-112"; chr4 rmsk exon 65062292 65065243 4385 - . gene_id "ERV316A3_4q13.1k"; transcript_id "ERV316A3_4q13.1k"; locus "ERV316A3_4q13.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0703"; repClass "LTR"; repEnd "4807"; repFamily "ERVL"; repLeft "1751"; repStart "-419"; ### MER61_4q13.1c ### chr4 rmsk gene 65075968 65080363 . + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0113"; model_cov "3494"; model_pct "67.0"; chr4 rmsk exon 65075968 65076292 1766 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0113"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 65076293 65076781 2238 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0113"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-4717"; repStart "1"; chr4 rmsk exon 65076791 65076970 922 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0113"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "-3630"; repStart "1408"; chr4 rmsk exon 65076975 65079674 18470 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0113"; repClass "LTR"; repEnd "5173"; repFamily "ERV1"; repLeft "-44"; repStart "2400"; chr4 rmsk exon 65079998 65080045 18470 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0113"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5174"; chr4 rmsk exon 65080047 65080363 1858 + . gene_id "MER61_4q13.1c"; transcript_id "MER61_4q13.1c"; locus "MER61_4q13.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0113"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_4q13.1 ### chr4 rmsk gene 65140542 65142641 . - . gene_id "ERVL_4q13.1"; transcript_id "ERVL_4q13.1"; locus "ERVL_4q13.1"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0102"; model_cov "1367"; model_pct "23.7"; chr4 rmsk exon 65140542 65141027 1711 - . gene_id "ERVL_4q13.1"; transcript_id "ERVL_4q13.1"; locus "ERVL_4q13.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0102"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr4 rmsk exon 65141028 65142343 7046 - . gene_id "ERVL_4q13.1"; transcript_id "ERVL_4q13.1"; locus "ERVL_4q13.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0102"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4390"; repStart "0"; chr4 rmsk exon 65142344 65142641 1459 - . gene_id "ERVL_4q13.1"; transcript_id "ERVL_4q13.1"; locus "ERVL_4q13.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0102"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "1"; repStart "-252"; ### ERVLB4_4q13.1l ### chr4 rmsk gene 65265189 65268152 . + . gene_id "ERVLB4_4q13.1l"; transcript_id "ERVLB4_4q13.1l"; locus "ERVLB4_4q13.1l"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0455"; model_cov "2271"; model_pct "39.7"; chr4 rmsk exon 65265189 65265432 1061 + . gene_id "ERVLB4_4q13.1l"; transcript_id "ERVLB4_4q13.1l"; locus "ERVLB4_4q13.1l"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0455"; repClass "LTR"; repEnd "255"; repFamily "ERVL"; repLeft "-301"; repStart "1"; chr4 rmsk exon 65265468 65267688 11902 + . gene_id "ERVLB4_4q13.1l"; transcript_id "ERVLB4_4q13.1l"; locus "ERVLB4_4q13.1l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0455"; repClass "LTR"; repEnd "5371"; repFamily "ERVL"; repLeft "-343"; repStart "3162"; chr4 rmsk exon 65267698 65267759 373 + . gene_id "ERVLB4_4q13.1l"; transcript_id "ERVLB4_4q13.1l"; locus "ERVLB4_4q13.1l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0455"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5652"; chr4 rmsk exon 65267760 65268152 1669 + . gene_id "ERVLB4_4q13.1l"; transcript_id "ERVLB4_4q13.1l"; locus "ERVLB4_4q13.1l"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0455"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERV316A3_4q13.1l ### chr4 rmsk gene 65303079 65305264 . + . gene_id "ERV316A3_4q13.1l"; transcript_id "ERV316A3_4q13.1l"; locus "ERV316A3_4q13.1l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0704"; model_cov "1519"; model_pct "29.1"; chr4 rmsk exon 65303079 65303252 356 + . gene_id "ERV316A3_4q13.1l"; transcript_id "ERV316A3_4q13.1l"; locus "ERV316A3_4q13.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0704"; repClass "LTR"; repEnd "3371"; repFamily "ERVL"; repLeft "-1855"; repStart "3204"; chr4 rmsk exon 65303463 65303889 970 + . gene_id "ERV316A3_4q13.1l"; transcript_id "ERV316A3_4q13.1l"; locus "ERV316A3_4q13.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0704"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "-1224"; repStart "3553"; chr4 rmsk exon 65303980 65304395 1135 + . gene_id "ERV316A3_4q13.1l"; transcript_id "ERV316A3_4q13.1l"; locus "ERV316A3_4q13.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0704"; repClass "LTR"; repEnd "4563"; repFamily "ERVL"; repLeft "-663"; repStart "4169"; chr4 rmsk exon 65304785 65305264 1135 + . gene_id "ERV316A3_4q13.1l"; transcript_id "ERV316A3_4q13.1l"; locus "ERV316A3_4q13.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0704"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "-153"; repStart "4564"; ### ERV316A3_4q13.1m ### chr4 rmsk gene 65339174 65341134 . + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0705"; model_cov "729"; model_pct "13.9"; chr4 rmsk exon 65339174 65339393 576 + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0705"; repClass "LTR"; repEnd "4310"; repFamily "ERVL"; repLeft "-916"; repStart "4086"; chr4 rmsk exon 65340215 65340286 306 + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0705"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "-751"; repStart "4403"; chr4 rmsk exon 65340329 65340503 568 + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0705"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "-391"; repStart "4638"; chr4 rmsk exon 65340501 65340730 752 + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0705"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "-44"; repStart "4946"; chr4 rmsk exon 65340769 65341134 429 + . gene_id "ERV316A3_4q13.1m"; transcript_id "ERV316A3_4q13.1m"; locus "ERV316A3_4q13.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0705"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-13"; repStart "3"; ### ERVLE_4q13.1l ### chr4 rmsk gene 65481236 65484520 . + . gene_id "ERVLE_4q13.1l"; transcript_id "ERVLE_4q13.1l"; locus "ERVLE_4q13.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0987"; model_cov "1202"; model_pct "21.2"; chr4 rmsk exon 65481236 65481475 270 + . gene_id "ERVLE_4q13.1l"; transcript_id "ERVLE_4q13.1l"; locus "ERVLE_4q13.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0987"; repClass "LTR"; repEnd "617"; repFamily "ERVL"; repLeft "-5050"; repStart "374"; chr4 rmsk exon 65481720 65481939 437 + . gene_id "ERVLE_4q13.1l"; transcript_id "ERVLE_4q13.1l"; locus "ERVLE_4q13.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0987"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "-4531"; repStart "908"; chr4 rmsk exon 65483559 65483786 398 + . gene_id "ERVLE_4q13.1l"; transcript_id "ERVLE_4q13.1l"; locus "ERVLE_4q13.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0987"; repClass "LTR"; repEnd "2096"; repFamily "ERVL"; repLeft "-3571"; repStart "1869"; chr4 rmsk exon 65484033 65484520 363 + . gene_id "ERVLE_4q13.1l"; transcript_id "ERVLE_4q13.1l"; locus "ERVLE_4q13.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0987"; repClass "LTR"; repEnd "2882"; repFamily "ERVL"; repLeft "-2785"; repStart "2378"; ### MER41_4q13.2a ### chr4 rmsk gene 65741735 65744722 . + . gene_id "MER41_4q13.2a"; transcript_id "MER41_4q13.2a"; locus "MER41_4q13.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0127"; model_cov "3013"; model_pct "50.7"; chr4 rmsk exon 65741735 65742945 6523 + . gene_id "MER41_4q13.2a"; transcript_id "MER41_4q13.2a"; locus "MER41_4q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0127"; repClass "LTR"; repEnd "2805"; repFamily "ERV1"; repLeft "-3141"; repStart "1213"; chr4 rmsk exon 65743055 65743824 6523 + . gene_id "MER41_4q13.2a"; transcript_id "MER41_4q13.2a"; locus "MER41_4q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0127"; repClass "LTR"; repEnd "3821"; repFamily "ERV1"; repLeft "-2125"; repStart "2806"; chr4 rmsk exon 65743821 65744214 2380 + . gene_id "MER41_4q13.2a"; transcript_id "MER41_4q13.2a"; locus "MER41_4q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0127"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "-4"; repStart "5536"; chr4 rmsk exon 65744219 65744722 3157 + . gene_id "MER41_4q13.2a"; transcript_id "MER41_4q13.2a"; locus "MER41_4q13.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0127"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### HERVL_4q13.2a ### chr4 rmsk gene 65807728 65815681 . + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0377"; model_cov "5648"; model_pct "99.9"; chr4 rmsk exon 65807728 65808173 3215 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr4 rmsk exon 65808174 65810456 37807 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "2267"; repFamily "ERVL"; repLeft "-3387"; repStart "1"; chr4 rmsk exon 65811509 65813642 37807 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "4485"; repFamily "ERVL"; repLeft "-1169"; repStart "2268"; chr4 rmsk exon 65813758 65814284 37807 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "5035"; repFamily "ERVL"; repLeft "-619"; repStart "4486"; chr4 rmsk exon 65814580 65814777 37807 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-432"; repStart "5036"; chr4 rmsk exon 65814827 65815243 37807 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5223"; chr4 rmsk exon 65815245 65815681 3244 + . gene_id "HERVL_4q13.2a"; transcript_id "HERVL_4q13.2a"; locus "HERVL_4q13.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0377"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "2"; ### ERV316A3_4q13.2a ### chr4 rmsk gene 66006443 66008245 . - . gene_id "ERV316A3_4q13.2a"; transcript_id "ERV316A3_4q13.2a"; locus "ERV316A3_4q13.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0707"; model_cov "1258"; model_pct "24.1"; chr4 rmsk exon 66006443 66006603 289 - . gene_id "ERV316A3_4q13.2a"; transcript_id "ERV316A3_4q13.2a"; locus "ERV316A3_4q13.2a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0707"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "248"; repStart "-6"; chr4 rmsk exon 66006695 66006860 552 - . gene_id "ERV316A3_4q13.2a"; transcript_id "ERV316A3_4q13.2a"; locus "ERV316A3_4q13.2a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0707"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "-14"; repStart "-287"; chr4 rmsk exon 66007014 66007112 292 - . gene_id "ERV316A3_4q13.2a"; transcript_id "ERV316A3_4q13.2a"; locus "ERV316A3_4q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0707"; repClass "LTR"; repEnd "5041"; repFamily "ERVL"; repLeft "4932"; repStart "-185"; chr4 rmsk exon 66007107 66008245 1208 - . gene_id "ERV316A3_4q13.2a"; transcript_id "ERV316A3_4q13.2a"; locus "ERV316A3_4q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0707"; repClass "LTR"; repEnd "3656"; repFamily "ERVL"; repLeft "2507"; repStart "-1570"; ### HERVL_4q13.2b ### chr4 rmsk gene 66086661 66092487 . - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0379"; model_cov "5283"; model_pct "93.4"; chr4 rmsk exon 66086661 66086802 982 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "142"; repFamily "ERVL"; repLeft "1"; repStart "-302"; chr4 rmsk exon 66086803 66086846 299 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5611"; repStart "0"; chr4 rmsk exon 66086843 66086905 3210 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "5510"; repFamily "ERVL"; repLeft "5457"; repStart "-144"; chr4 rmsk exon 66087206 66087620 3210 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "5456"; repFamily "ERVL"; repLeft "4986"; repStart "-198"; chr4 rmsk exon 66087618 66092217 31503 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "1"; repStart "-936"; chr4 rmsk exon 66092343 66092487 1002 - . gene_id "HERVL_4q13.2b"; transcript_id "HERVL_4q13.2b"; locus "HERVL_4q13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0379"; repClass "LTR"; repEnd "157"; repFamily "ERVL"; repLeft "5"; repStart "-287"; ### ERV316A3_4q13.2b ### chr4 rmsk gene 66154961 66155998 . + . gene_id "ERV316A3_4q13.2b"; transcript_id "ERV316A3_4q13.2b"; locus "ERV316A3_4q13.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0709"; model_cov "631"; model_pct "12.1"; chr4 rmsk exon 66154961 66155305 800 + . gene_id "ERV316A3_4q13.2b"; transcript_id "ERV316A3_4q13.2b"; locus "ERV316A3_4q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0709"; repClass "LTR"; repEnd "4259"; repFamily "ERVL"; repLeft "-967"; repStart "3913"; chr4 rmsk exon 66155295 66155579 414 + . gene_id "ERV316A3_4q13.2b"; transcript_id "ERV316A3_4q13.2b"; locus "ERV316A3_4q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0709"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "4933"; chr4 rmsk exon 66155632 66155998 746 + . gene_id "ERV316A3_4q13.2b"; transcript_id "ERV316A3_4q13.2b"; locus "ERV316A3_4q13.2b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0709"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-24"; repStart "77"; ### ERVLB4_4q13.2a ### chr4 rmsk gene 66620454 66627331 . + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0457"; model_cov "5650"; model_pct "98.9"; chr4 rmsk exon 66620454 66620880 1333 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "17"; chr4 rmsk exon 66620881 66626039 14582 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "5370"; repFamily "ERVL"; repLeft "-344"; repStart "61"; chr4 rmsk exon 66626067 66626095 8301 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "-317"; repStart "5371"; chr4 rmsk exon 66626455 66626756 8301 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5398"; chr4 rmsk exon 66626758 66627167 1342 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "-52"; repStart "2"; chr4 rmsk exon 66627284 66627331 248 + . gene_id "ERVLB4_4q13.2a"; transcript_id "ERVLB4_4q13.2a"; locus "ERVLB4_4q13.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0457"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "509"; ### ERV316A3_4q13.2c ### chr4 rmsk gene 66779367 66781023 . + . gene_id "ERV316A3_4q13.2c"; transcript_id "ERV316A3_4q13.2c"; locus "ERV316A3_4q13.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0711"; model_cov "1124"; model_pct "21.5"; chr4 rmsk exon 66779367 66779636 1510 + . gene_id "ERV316A3_4q13.2c"; transcript_id "ERV316A3_4q13.2c"; locus "ERV316A3_4q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0711"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-2946"; repStart "1873"; chr4 rmsk exon 66779977 66780345 1510 + . gene_id "ERV316A3_4q13.2c"; transcript_id "ERV316A3_4q13.2c"; locus "ERV316A3_4q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0711"; repClass "LTR"; repEnd "2995"; repFamily "ERVL"; repLeft "-2231"; repStart "2619"; chr4 rmsk exon 66780651 66781023 1510 + . gene_id "ERV316A3_4q13.2c"; transcript_id "ERV316A3_4q13.2c"; locus "ERV316A3_4q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0711"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-1889"; repStart "2996"; ### ERVLE_4q13.2a ### chr4 rmsk gene 67020593 67023089 . - . gene_id "ERVLE_4q13.2a"; transcript_id "ERVLE_4q13.2a"; locus "ERVLE_4q13.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_0989"; model_cov "1709"; model_pct "30.2"; chr4 rmsk exon 67020593 67021081 668 - . gene_id "ERVLE_4q13.2a"; transcript_id "ERVLE_4q13.2a"; locus "ERVLE_4q13.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_0989"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "1"; repStart "-157"; chr4 rmsk exon 67021176 67022632 5011 - . gene_id "ERVLE_4q13.2a"; transcript_id "ERVLE_4q13.2a"; locus "ERVLE_4q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0989"; repClass "LTR"; repEnd "5553"; repFamily "ERVL"; repLeft "3925"; repStart "-114"; chr4 rmsk exon 67023008 67023089 391 - . gene_id "ERVLE_4q13.2a"; transcript_id "ERVLE_4q13.2a"; locus "ERVLE_4q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0989"; repClass "LTR"; repEnd "3815"; repFamily "ERVL"; repLeft "3734"; repStart "-1852"; ### ERV316A3_4q13.2d ### chr4 rmsk gene 67043410 67047249 . - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0712"; model_cov "3419"; model_pct "65.4"; chr4 rmsk exon 67043410 67044448 3708 - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0712"; repClass "LTR"; repEnd "5069"; repFamily "ERVL"; repLeft "4055"; repStart "-157"; chr4 rmsk exon 67044507 67046789 5291 - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0712"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "392"; repStart "-2597"; chr4 rmsk exon 67046821 67046989 305 - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0712"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "233"; repStart "-4825"; chr4 rmsk exon 67046995 67047114 397 - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0712"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "299"; repStart "-4"; chr4 rmsk exon 67047110 67047249 274 - . gene_id "ERV316A3_4q13.2d"; transcript_id "ERV316A3_4q13.2d"; locus "ERV316A3_4q13.2d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0712"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "147"; repStart "-161"; ### ERVLE_4q13.2b ### chr4 rmsk gene 67256989 67261877 . - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0991"; model_cov "2885"; model_pct "50.9"; chr4 rmsk exon 67256989 67257188 647 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "4971"; repFamily "ERVL"; repLeft "4757"; repStart "-696"; chr4 rmsk exon 67257227 67257377 1818 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "3198"; repStart "-2315"; chr4 rmsk exon 67257785 67258259 1818 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "3197"; repFamily "ERVL"; repLeft "2718"; repStart "-2470"; chr4 rmsk exon 67258523 67258868 1818 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "2717"; repFamily "ERVL"; repLeft "2334"; repStart "-2950"; chr4 rmsk exon 67258888 67259030 514 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "2116"; repStart "-3413"; chr4 rmsk exon 67259020 67259674 941 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "1982"; repFamily "ERVL"; repLeft "1318"; repStart "-3685"; chr4 rmsk exon 67260076 67260116 941 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "1275"; repStart "-4350"; chr4 rmsk exon 67260967 67261570 1321 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "1063"; repFamily "ERVL"; repLeft "445"; repStart "-4604"; chr4 rmsk exon 67261678 67261877 483 - . gene_id "ERVLE_4q13.2b"; transcript_id "ERVLE_4q13.2b"; locus "ERVLE_4q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0991"; repClass "LTR"; repEnd "215"; repFamily "ERVL"; repLeft "22"; repStart "-5452"; ### MER41_4q13.2b ### chr4 rmsk gene 67283376 67285541 . - . gene_id "MER41_4q13.2b"; transcript_id "MER41_4q13.2b"; locus "MER41_4q13.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0128"; model_cov "1731"; model_pct "29.1"; chr4 rmsk exon 67283376 67284127 6840 - . gene_id "MER41_4q13.2b"; transcript_id "MER41_4q13.2b"; locus "MER41_4q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0128"; repClass "LTR"; repEnd "4475"; repFamily "ERV1"; repLeft "3740"; repStart "-1471"; chr4 rmsk exon 67284420 67285541 6840 - . gene_id "MER41_4q13.2b"; transcript_id "MER41_4q13.2b"; locus "MER41_4q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0128"; repClass "LTR"; repEnd "3739"; repFamily "ERV1"; repLeft "2743"; repStart "-2207"; ### ERV316A3_4q13.2e ### chr4 rmsk gene 67891965 67894000 . + . gene_id "ERV316A3_4q13.2e"; transcript_id "ERV316A3_4q13.2e"; locus "ERV316A3_4q13.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0713"; model_cov "1573"; model_pct "30.1"; chr4 rmsk exon 67891965 67892295 1284 + . gene_id "ERV316A3_4q13.2e"; transcript_id "ERV316A3_4q13.2e"; locus "ERV316A3_4q13.2e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0713"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "-6"; repStart "80"; chr4 rmsk exon 67892325 67893547 3185 + . gene_id "ERV316A3_4q13.2e"; transcript_id "ERV316A3_4q13.2e"; locus "ERV316A3_4q13.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0713"; repClass "LTR"; repEnd "1269"; repFamily "ERVL"; repLeft "-3957"; repStart "28"; chr4 rmsk exon 67893668 67894000 1266 + . gene_id "ERV316A3_4q13.2e"; transcript_id "ERV316A3_4q13.2e"; locus "ERV316A3_4q13.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0713"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "-1001"; repStart "3893"; ### ERV316A3_4q13.2f ### chr4 rmsk gene 67983409 67985637 . + . gene_id "ERV316A3_4q13.2f"; transcript_id "ERV316A3_4q13.2f"; locus "ERV316A3_4q13.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0714"; model_cov "1803"; model_pct "34.5"; chr4 rmsk exon 67983409 67983797 1518 + . gene_id "ERV316A3_4q13.2f"; transcript_id "ERV316A3_4q13.2f"; locus "ERV316A3_4q13.2f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0714"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "45"; chr4 rmsk exon 67983851 67985637 4224 + . gene_id "ERV316A3_4q13.2f"; transcript_id "ERV316A3_4q13.2f"; locus "ERV316A3_4q13.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0714"; repClass "LTR"; repEnd "1881"; repFamily "ERVL"; repLeft "-3345"; repStart "78"; ### HERVH_4q13.2 ### chr4 rmsk gene 68030946 68037573 . + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0373"; model_cov "6126"; model_pct "79.4"; chr4 rmsk exon 68030946 68031311 2259 + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0373"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 68031312 68036230 21070 + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0373"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr4 rmsk exon 68036228 68036647 2617 + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0373"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5594"; chr4 rmsk exon 68036641 68037201 3871 + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0373"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr4 rmsk exon 68037202 68037573 2176 + . gene_id "HERVH_4q13.2"; transcript_id "HERVH_4q13.2"; locus "HERVH_4q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0373"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_4q13.2c ### chr4 rmsk gene 68259844 68265588 . + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0129"; model_cov "3750"; model_pct "63.1"; chr4 rmsk exon 68259844 68259998 1056 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0129"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "479"; chr4 rmsk exon 68260000 68260315 1973 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "-5628"; repStart "2"; chr4 rmsk exon 68260309 68260386 520 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "-5138"; repStart "731"; chr4 rmsk exon 68260383 68260984 3495 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "1789"; repFamily "ERV1"; repLeft "-4157"; repStart "1188"; chr4 rmsk exon 68260958 68261071 667 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "1745"; repFamily "ERV1"; repLeft "-4201"; repStart "1634"; chr4 rmsk exon 68261428 68262544 17059 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "3722"; repFamily "ERV1"; repLeft "-2224"; repStart "3300"; chr4 rmsk exon 68262838 68265040 17059 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0129"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "3723"; chr4 rmsk exon 68265041 68265588 3867 + . gene_id "MER41_4q13.2c"; transcript_id "MER41_4q13.2c"; locus "MER41_4q13.2c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0129"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### MER41_4q13.2d ### chr4 rmsk gene 68295086 68296972 . - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0131"; model_cov "1807"; model_pct "30.4"; chr4 rmsk exon 68295086 68295680 3473 - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0131"; repClass "LTR"; repEnd "2812"; repFamily "ERV1"; repLeft "2166"; repStart "-3134"; chr4 rmsk exon 68295687 68295800 613 - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0131"; repClass "LTR"; repEnd "1728"; repFamily "ERV1"; repLeft "1627"; repStart "-4218"; chr4 rmsk exon 68295780 68296151 2304 - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0131"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "1392"; repStart "-4171"; chr4 rmsk exon 68296152 68296824 4167 - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0131"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "13"; repStart "-5256"; chr4 rmsk exon 68296825 68296972 906 - . gene_id "MER41_4q13.2d"; transcript_id "MER41_4q13.2d"; locus "MER41_4q13.2d"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0131"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "483"; repStart "-2"; ### MER4_4q13.2a ### chr4 rmsk gene 68404735 68410536 . + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0211"; model_cov "3176"; model_pct "48.1"; chr4 rmsk exon 68404735 68405174 2803 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0211"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 68405180 68405498 2370 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-6250"; repStart "1"; chr4 rmsk exon 68405808 68405893 2370 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "419"; repFamily "ERV1"; repLeft "-6179"; repStart "349"; chr4 rmsk exon 68406296 68406569 2370 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "816"; repFamily "ERV1"; repLeft "-5782"; repStart "345"; chr4 rmsk exon 68406697 68406751 343 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "-5706"; repStart "838"; chr4 rmsk exon 68406746 68407203 7447 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "1484"; repFamily "ERV1"; repLeft "-5114"; repStart "994"; chr4 rmsk exon 68407604 68408597 7447 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "2473"; repFamily "ERV1"; repLeft "-4125"; repStart "1485"; chr4 rmsk exon 68409222 68409244 7447 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "2474"; chr4 rmsk exon 68409375 68410093 3897 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0211"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5860"; chr4 rmsk exon 68410094 68410536 2937 + . gene_id "MER4_4q13.2a"; transcript_id "MER4_4q13.2a"; locus "MER4_4q13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0211"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4q13.2b ### chr4 rmsk gene 68552163 68558983 . + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0212"; model_cov "6001"; model_pct "91.0"; chr4 rmsk exon 68552163 68552626 3090 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0212"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 68552630 68553138 2313 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "586"; repFamily "ERV1"; repLeft "-6012"; repStart "1"; chr4 rmsk exon 68553175 68553282 284 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "836"; repFamily "ERV1"; repLeft "-5762"; repStart "736"; chr4 rmsk exon 68553332 68553703 1200 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "2480"; repFamily "ERV1"; repLeft "-4118"; repStart "2112"; chr4 rmsk exon 68553697 68554355 4259 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "-5910"; repStart "34"; chr4 rmsk exon 68554381 68554618 1033 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "1019"; repFamily "ERV1"; repLeft "-5579"; repStart "778"; chr4 rmsk exon 68554617 68555359 3861 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1748"; chr4 rmsk exon 68555596 68556435 3964 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "3632"; repFamily "ERV1"; repLeft "-2966"; repStart "2737"; chr4 rmsk exon 68556439 68558753 13829 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0212"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4173"; chr4 rmsk exon 68558761 68558908 812 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0212"; repClass "LTR"; repEnd "181"; repFamily "ERV1"; repLeft "-291"; repStart "1"; chr4 rmsk exon 68558926 68558983 409 + . gene_id "MER4_4q13.2b"; transcript_id "MER4_4q13.2b"; locus "MER4_4q13.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0212"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "415"; ### HARLEQUIN_4q13.2a ### chr4 rmsk gene 68571156 68576696 . - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0058"; model_cov "5031"; model_pct "73.0"; chr4 rmsk exon 68571156 68572448 8370 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5512"; repStart "0"; chr4 rmsk exon 68572641 68574209 11582 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "4970"; repFamily "ERV1"; repLeft "3352"; repStart "-1926"; chr4 rmsk exon 68574208 68575202 6492 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "2575"; repFamily "ERV1"; repLeft "1570"; repStart "-4321"; chr4 rmsk exon 68575188 68575842 4529 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "907"; repFamily "ERV1"; repLeft "262"; repStart "-5989"; chr4 rmsk exon 68575838 68576215 2517 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr4 rmsk exon 68576216 68576696 3774 - . gene_id "HARLEQUIN_4q13.2a"; transcript_id "HARLEQUIN_4q13.2a"; locus "HARLEQUIN_4q13.2a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0058"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_4q13.2a ### chr4 rmsk gene 68576697 68582193 . + . gene_id "HERVH48_4q13.2a"; transcript_id "HERVH48_4q13.2a"; locus "HERVH48_4q13.2a"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0017"; model_cov "5135"; model_pct "77.2"; chr4 rmsk exon 68576697 68581026 26487 + . gene_id "HERVH48_4q13.2a"; transcript_id "HERVH48_4q13.2a"; locus "HERVH48_4q13.2a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0017"; repClass "LTR"; repEnd "4520"; repFamily "ERV1"; repLeft "-2134"; repStart "125"; chr4 rmsk exon 68581033 68581609 4092 + . gene_id "HERVH48_4q13.2a"; transcript_id "HERVH48_4q13.2a"; locus "HERVH48_4q13.2a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0017"; repClass "LTR"; repEnd "5653"; repFamily "ERV1"; repLeft "-1001"; repStart "5080"; chr4 rmsk exon 68581610 68581778 1237 + . gene_id "HERVH48_4q13.2a"; transcript_id "HERVH48_4q13.2a"; locus "HERVH48_4q13.2a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0017"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "-15"; repStart "6472"; chr4 rmsk exon 68581792 68582193 2887 + . gene_id "HERVH48_4q13.2a"; transcript_id "HERVH48_4q13.2a"; locus "HERVH48_4q13.2a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0017"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### PRIMA41_4q13.2a ### chr4 rmsk gene 68589945 68593527 . + . gene_id "PRIMA41_4q13.2a"; transcript_id "PRIMA41_4q13.2a"; locus "PRIMA41_4q13.2a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0049"; model_cov "3029"; model_pct "39.1"; chr4 rmsk exon 68589945 68590486 848 + . gene_id "PRIMA41_4q13.2a"; transcript_id "PRIMA41_4q13.2a"; locus "PRIMA41_4q13.2a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0049"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 68590532 68593527 9076 + . gene_id "PRIMA41_4q13.2a"; transcript_id "PRIMA41_4q13.2a"; locus "PRIMA41_4q13.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0049"; repClass "LTR"; repEnd "3076"; repFamily "ERV1"; repLeft "-4680"; repStart "47"; ### HML2_4q13.2 ### chr4 rmsk gene 68597991 68603505 . + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0037"; model_cov "3562"; model_pct "47.3"; chr4 rmsk exon 68597991 68598948 6942 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "955"; repFamily "ERVK"; repLeft "-78"; repStart "1"; chr4 rmsk exon 68598949 68602490 20320 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "7511"; repFamily "ERVK"; repLeft "-25"; repStart "3949"; chr4 rmsk exon 68602500 68603505 7736 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### PRIMA41_4q13.2b ### chr4 rmsk gene 68605422 68606192 . + . gene_id "PRIMA41_4q13.2b"; transcript_id "PRIMA41_4q13.2b"; locus "PRIMA41_4q13.2b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0050"; model_cov "791"; model_pct "10.2"; chr4 rmsk exon 68605422 68606192 2051 + . gene_id "PRIMA41_4q13.2b"; transcript_id "PRIMA41_4q13.2b"; locus "PRIMA41_4q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0050"; repClass "LTR"; repEnd "5955"; repFamily "ERV1"; repLeft "-1801"; repStart "5164"; ### MER4_4q13.2c ### chr4 rmsk gene 68656982 68661386 . + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0215"; model_cov "4053"; model_pct "61.4"; chr4 rmsk exon 68656982 68657633 4391 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0215"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "-5910"; repStart "40"; chr4 rmsk exon 68657659 68657897 1067 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0215"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "-5573"; repStart "778"; chr4 rmsk exon 68657896 68658638 3873 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0215"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1748"; chr4 rmsk exon 68658846 68661156 13646 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0215"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4173"; chr4 rmsk exon 68661164 68661310 805 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0215"; repClass "LTR"; repEnd "181"; repFamily "ERV1"; repLeft "-291"; repStart "1"; chr4 rmsk exon 68661328 68661386 379 + . gene_id "MER4_4q13.2c"; transcript_id "MER4_4q13.2c"; locus "MER4_4q13.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0215"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "415"; ### HERVH48_4q13.2b ### chr4 rmsk gene 68671742 68677470 . + . gene_id "HERVH48_4q13.2b"; transcript_id "HERVH48_4q13.2b"; locus "HERVH48_4q13.2b"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0018"; model_cov "5449"; model_pct "81.9"; chr4 rmsk exon 68671742 68672145 2935 + . gene_id "HERVH48_4q13.2b"; transcript_id "HERVH48_4q13.2b"; locus "HERVH48_4q13.2b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0018"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr4 rmsk exon 68672146 68677470 34081 + . gene_id "HERVH48_4q13.2b"; transcript_id "HERVH48_4q13.2b"; locus "HERVH48_4q13.2b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0018"; repClass "LTR"; repEnd "5450"; repFamily "ERV1"; repLeft "-1204"; repStart "1"; ### MER61_4q13.2 ### chr4 rmsk gene 68735173 68737101 . - . gene_id "MER61_4q13.2"; transcript_id "MER61_4q13.2"; locus "MER61_4q13.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0114"; model_cov "1026"; model_pct "19.7"; chr4 rmsk exon 68735173 68735465 1137 - . gene_id "MER61_4q13.2"; transcript_id "MER61_4q13.2"; locus "MER61_4q13.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0114"; repClass "LTR"; repEnd "336"; repFamily "ERV1"; repLeft "2"; repStart "-5"; chr4 rmsk exon 68735467 68736444 3963 - . gene_id "MER61_4q13.2"; transcript_id "MER61_4q13.2"; locus "MER61_4q13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0114"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4191"; repStart "0"; chr4 rmsk exon 68736789 68737101 1507 - . gene_id "MER61_4q13.2"; transcript_id "MER61_4q13.2"; locus "MER61_4q13.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0114"; repClass "LTR"; repEnd "309"; repFamily "ERV1"; repLeft "1"; repStart "-32"; ### HML6_4q13.2 ### chr4 rmsk gene 68744586 68751238 . - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0017"; model_cov "5018"; model_pct "69.7"; chr4 rmsk exon 68744586 68745011 2450 - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0017"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chr4 rmsk exon 68745014 68746470 6528 - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0017"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "5742"; repStart "-2"; chr4 rmsk exon 68747318 68750291 16851 - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0017"; repClass "LTR"; repEnd "5747"; repFamily "ERVK"; repLeft "2723"; repStart "-1455"; chr4 rmsk exon 68750300 68750796 2864 - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0017"; repClass "LTR"; repEnd "564"; repFamily "ERVK"; repLeft "28"; repStart "-6638"; chr4 rmsk exon 68750820 68751238 2096 - . gene_id "HML6_4q13.2"; transcript_id "HML6_4q13.2"; locus "HML6_4q13.2"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0017"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV30_4q13.2a ### chr4 rmsk gene 68801310 68805681 . + . gene_id "HERV30_4q13.2a"; transcript_id "HERV30_4q13.2a"; locus "HERV30_4q13.2a"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0006"; model_cov "3687"; model_pct "44.7"; chr4 rmsk exon 68801310 68804078 20601 + . gene_id "HERV30_4q13.2a"; transcript_id "HERV30_4q13.2a"; locus "HERV30_4q13.2a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0006"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "688"; chr4 rmsk exon 68804072 68804976 6205 + . gene_id "HERV30_4q13.2a"; transcript_id "HERV30_4q13.2a"; locus "HERV30_4q13.2a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0006"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr4 rmsk exon 68804978 68805681 4983 + . gene_id "HERV30_4q13.2a"; transcript_id "HERV30_4q13.2a"; locus "HERV30_4q13.2a"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0006"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### MER4B_4q13.2a ### chr4 rmsk gene 68864341 68874793 . + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0122"; model_cov "6264"; model_pct "92.7"; chr4 rmsk exon 68864341 68864456 639 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "-6135"; repStart "510"; chr4 rmsk exon 68865654 68865912 1051 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "861"; repFamily "ERV1"; repLeft "-5897"; repStart "608"; chr4 rmsk exon 68867507 68869202 26354 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "-4131"; repStart "855"; chr4 rmsk exon 68869690 68870072 26354 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-3749"; repStart "2628"; chr4 rmsk exon 68870288 68870410 26354 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "3071"; repFamily "ERV1"; repLeft "-3687"; repStart "3010"; chr4 rmsk exon 68870576 68870925 26354 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "3416"; repFamily "ERV1"; repLeft "-3342"; repStart "3072"; chr4 rmsk exon 68870983 68874237 26354 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "3417"; chr4 rmsk exon 68874238 68874451 1011 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "-395"; repStart "291"; chr4 rmsk exon 68874468 68874793 1649 + . gene_id "MER4B_4q13.2a"; transcript_id "MER4B_4q13.2a"; locus "MER4B_4q13.2a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0122"; repClass "LTR"; repEnd "897"; repFamily "ERV1"; repLeft "-3"; repStart "564"; ### ERVLB4_4q13.2b ### chr4 rmsk gene 68886736 68889248 . - . gene_id "ERVLB4_4q13.2b"; transcript_id "ERVLB4_4q13.2b"; locus "ERVLB4_4q13.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0459"; model_cov "1950"; model_pct "34.1"; chr4 rmsk exon 68886736 68887585 4529 - . gene_id "ERVLB4_4q13.2b"; transcript_id "ERVLB4_4q13.2b"; locus "ERVLB4_4q13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0459"; repClass "LTR"; repEnd "4692"; repFamily "ERVL"; repLeft "3837"; repStart "-1022"; chr4 rmsk exon 68887593 68888692 4494 - . gene_id "ERVLB4_4q13.2b"; transcript_id "ERVLB4_4q13.2b"; locus "ERVLB4_4q13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0459"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "1"; repStart "-4618"; chr4 rmsk exon 68888693 68889248 1912 - . gene_id "ERVLB4_4q13.2b"; transcript_id "ERVLB4_4q13.2b"; locus "ERVLB4_4q13.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0459"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "11"; repStart "0"; ### HERV3_4q13.2a ### chr4 rmsk gene 68901045 68907797 . - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0015"; model_cov "7356"; model_pct "87.3"; chr4 rmsk exon 68901045 68905036 22905 - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0015"; repClass "LTR"; repEnd "6223"; repFamily "ERV1"; repLeft "1046"; repStart "-2203"; chr4 rmsk exon 68905076 68905221 642 - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0015"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "936"; repStart "-7307"; chr4 rmsk exon 68905198 68905750 1649 - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0015"; repClass "LTR"; repEnd "2322"; repFamily "ERV1"; repLeft "1709"; repStart "-6104"; chr4 rmsk exon 68905746 68907106 4059 - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0015"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "4"; repStart "-7039"; chr4 rmsk exon 68907110 68907797 4143 - . gene_id "HERV3_4q13.2a"; transcript_id "HERV3_4q13.2a"; locus "HERV3_4q13.2a"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0015"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_4q13.2b ### chr4 rmsk gene 68952944 68962940 . + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0124"; model_cov "5552"; model_pct "82.2"; chr4 rmsk exon 68952944 68953567 2576 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "1"; chr4 rmsk exon 68953599 68954200 3034 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "-6146"; repStart "1"; chr4 rmsk exon 68955418 68955651 1036 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "-5913"; repStart "608"; chr4 rmsk exon 68957301 68957547 6403 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "1271"; repFamily "ERV1"; repLeft "-5487"; repStart "855"; chr4 rmsk exon 68958190 68958988 6403 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "-4131"; repStart "1272"; chr4 rmsk exon 68959479 68959839 6403 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "2983"; repFamily "ERV1"; repLeft "-3775"; repStart "2628"; chr4 rmsk exon 68960190 68960540 5440 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "3416"; repFamily "ERV1"; repLeft "-3342"; repStart "3071"; chr4 rmsk exon 68960578 68961145 5440 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "4002"; repFamily "ERV1"; repLeft "-2756"; repStart "3417"; chr4 rmsk exon 68961148 68961528 1839 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "4624"; repFamily "ERV1"; repLeft "-2134"; repStart "4241"; chr4 rmsk exon 68961547 68962940 4894 + . gene_id "MER4B_4q13.2b"; transcript_id "MER4B_4q13.2b"; locus "MER4B_4q13.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0124"; repClass "LTR"; repEnd "6336"; repFamily "ERV1"; repLeft "-422"; repStart "5071"; ### LTR57_4q13.2 ### chr4 rmsk gene 68957548 68958189 . + . gene_id "LTR57_4q13.2"; transcript_id "LTR57_4q13.2"; locus "LTR57_4q13.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0056"; model_cov "645"; model_pct "12.1"; chr4 rmsk exon 68957548 68958189 1734 + . gene_id "LTR57_4q13.2"; transcript_id "LTR57_4q13.2"; locus "LTR57_4q13.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0056"; repClass "LTR"; repEnd "1458"; repFamily "ERVL"; repLeft "-3885"; repStart "813"; ### HARLEQUIN_4q13.2b ### chr4 rmsk gene 69050860 69057338 . + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0059"; model_cov "5568"; model_pct "80.7"; chr4 rmsk exon 69050860 69051337 3819 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 69051338 69051715 2461 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr4 rmsk exon 69051711 69052349 4617 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "262"; chr4 rmsk exon 69052334 69053326 6608 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1570"; chr4 rmsk exon 69053326 69056858 23002 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "3352"; chr4 rmsk exon 69056859 69057338 3801 + . gene_id "HARLEQUIN_4q13.2b"; transcript_id "HARLEQUIN_4q13.2b"; locus "HARLEQUIN_4q13.2b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0059"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV3_4q13.2b ### chr4 rmsk gene 69057663 69064798 . + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0016"; model_cov "6199"; model_pct "73.6"; chr4 rmsk exon 69057663 69058092 2178 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "-7307"; repStart "662"; chr4 rmsk exon 69058117 69058445 1268 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "-7039"; repStart "1046"; chr4 rmsk exon 69058436 69063051 25674 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "6435"; repFamily "ERV1"; repLeft "-1991"; repStart "1704"; chr4 rmsk exon 69063344 69063384 25674 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "6467"; repFamily "ERV1"; repLeft "-1959"; repStart "6436"; chr4 rmsk exon 69063374 69064007 3053 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "8422"; repFamily "ERV1"; repLeft "-4"; repStart "7783"; chr4 rmsk exon 69064140 69064798 4051 + . gene_id "HERV3_4q13.2b"; transcript_id "HERV3_4q13.2b"; locus "HERV3_4q13.2b"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0016"; repClass "LTR"; repEnd "673"; repFamily "ERV1"; repLeft "-2"; repStart "30"; ### HERVK11_4q13.2 ### chr4 rmsk gene 69191808 69199234 . + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0026"; model_cov "5675"; model_pct "71.4"; chr4 rmsk exon 69191808 69191897 658 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "91"; repFamily "ERVK"; repLeft "-1175"; repStart "1"; chr4 rmsk exon 69191895 69192341 2598 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "861"; chr4 rmsk exon 69192349 69195436 22692 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "3066"; repFamily "ERVK"; repLeft "-4887"; repStart "6"; chr4 rmsk exon 69195438 69196169 5024 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "6075"; repFamily "ERVK"; repLeft "-1878"; repStart "5331"; chr4 rmsk exon 69196348 69198210 14267 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6082"; chr4 rmsk exon 69198211 69199234 4442 + . gene_id "HERVK11_4q13.2"; transcript_id "HERVK11_4q13.2"; locus "HERVK11_4q13.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0026"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV30_4q13.2b ### chr4 rmsk gene 69220529 69225367 . - . gene_id "HERV30_4q13.2b"; transcript_id "HERV30_4q13.2b"; locus "HERV30_4q13.2b"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0007"; model_cov "4174"; model_pct "50.6"; chr4 rmsk exon 69220529 69221229 4946 - . gene_id "HERV30_4q13.2b"; transcript_id "HERV30_4q13.2b"; locus "HERV30_4q13.2b"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0007"; repClass "LTR"; repEnd "8057"; repFamily "ERV1"; repLeft "7344"; repStart "-200"; chr4 rmsk exon 69221223 69224656 24552 - . gene_id "HERV30_4q13.2b"; transcript_id "HERV30_4q13.2b"; locus "HERV30_4q13.2b"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0007"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "1"; repStart "-4795"; chr4 rmsk exon 69224658 69225367 4864 - . gene_id "HERV30_4q13.2b"; transcript_id "HERV30_4q13.2b"; locus "HERV30_4q13.2b"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0007"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q13.2g ### chr4 rmsk gene 69264033 69265740 . - . gene_id "ERV316A3_4q13.2g"; transcript_id "ERV316A3_4q13.2g"; locus "ERV316A3_4q13.2g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0722"; model_cov "677"; model_pct "13.0"; chr4 rmsk exon 69264033 69264209 434 - . gene_id "ERV316A3_4q13.2g"; transcript_id "ERV316A3_4q13.2g"; locus "ERV316A3_4q13.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0722"; repClass "LTR"; repEnd "2342"; repFamily "ERVL"; repLeft "2159"; repStart "-2884"; chr4 rmsk exon 69265012 69265273 286 - . gene_id "ERV316A3_4q13.2g"; transcript_id "ERV316A3_4q13.2g"; locus "ERV316A3_4q13.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0722"; repClass "LTR"; repEnd "2102"; repFamily "ERVL"; repLeft "1838"; repStart "-3124"; chr4 rmsk exon 69265509 69265740 361 - . gene_id "ERV316A3_4q13.2g"; transcript_id "ERV316A3_4q13.2g"; locus "ERV316A3_4q13.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0722"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "1202"; repStart "-3794"; ### HERV30_4q13.2c ### chr4 rmsk gene 69266940 69272665 . + . gene_id "HERV30_4q13.2c"; transcript_id "HERV30_4q13.2c"; locus "HERV30_4q13.2c"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0008"; model_cov "4373"; model_pct "53.0"; chr4 rmsk exon 69266940 69267639 4916 + . gene_id "HERV30_4q13.2c"; transcript_id "HERV30_4q13.2c"; locus "HERV30_4q13.2c"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0008"; repClass "LTR"; repEnd "719"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr4 rmsk exon 69267640 69271069 25288 + . gene_id "HERV30_4q13.2c"; transcript_id "HERV30_4q13.2c"; locus "HERV30_4q13.2c"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0008"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "2"; chr4 rmsk exon 69271063 69271963 6199 + . gene_id "HERV30_4q13.2c"; transcript_id "HERV30_4q13.2c"; locus "HERV30_4q13.2c"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0008"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr4 rmsk exon 69271965 69272665 4965 + . gene_id "HERV30_4q13.2c"; transcript_id "HERV30_4q13.2c"; locus "HERV30_4q13.2c"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0008"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HERV30_4q13.2d ### chr4 rmsk gene 69375902 69381641 . + . gene_id "HERV30_4q13.2d"; transcript_id "HERV30_4q13.2d"; locus "HERV30_4q13.2d"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0009"; model_cov "4374"; model_pct "53.0"; chr4 rmsk exon 69375902 69376607 4900 + . gene_id "HERV30_4q13.2d"; transcript_id "HERV30_4q13.2d"; locus "HERV30_4q13.2d"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0009"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 69376609 69380049 25375 + . gene_id "HERV30_4q13.2d"; transcript_id "HERV30_4q13.2d"; locus "HERV30_4q13.2d"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0009"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "1"; chr4 rmsk exon 69380043 69380943 6334 + . gene_id "HERV30_4q13.2d"; transcript_id "HERV30_4q13.2d"; locus "HERV30_4q13.2d"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0009"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr4 rmsk exon 69380950 69381641 4885 + . gene_id "HERV30_4q13.2d"; transcript_id "HERV30_4q13.2d"; locus "HERV30_4q13.2d"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0009"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "-2"; repStart "9"; ### HERVL_4q13.3a ### chr4 rmsk gene 69527809 69535088 . + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_0380"; model_cov "5647"; model_pct "99.9"; chr4 rmsk exon 69527809 69528361 1809 + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0380"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr4 rmsk exon 69528367 69532008 33978 + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0380"; repClass "LTR"; repEnd "3669"; repFamily "ERVL"; repLeft "-1985"; repStart "6"; chr4 rmsk exon 69532009 69532553 2448 + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0380"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 69532554 69534575 33978 + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0380"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3670"; chr4 rmsk exon 69534576 69535088 1577 + . gene_id "HERVL_4q13.3a"; transcript_id "HERVL_4q13.3a"; locus "HERVL_4q13.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0380"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-43"; repStart "1"; ### ERVLE_4q13.3a ### chr4 rmsk gene 69540740 69545098 . + . gene_id "ERVLE_4q13.3a"; transcript_id "ERVLE_4q13.3a"; locus "ERVLE_4q13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0994"; model_cov "1104"; model_pct "19.5"; chr4 rmsk exon 69540740 69541037 380 + . gene_id "ERVLE_4q13.3a"; transcript_id "ERVLE_4q13.3a"; locus "ERVLE_4q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0994"; repClass "LTR"; repEnd "3474"; repFamily "ERVL"; repLeft "-2193"; repStart "3168"; chr4 rmsk exon 69541502 69541724 486 + . gene_id "ERVLE_4q13.3a"; transcript_id "ERVLE_4q13.3a"; locus "ERVLE_4q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0994"; repClass "LTR"; repEnd "3893"; repFamily "ERVL"; repLeft "-1774"; repStart "3681"; chr4 rmsk exon 69544219 69544663 650 + . gene_id "ERVLE_4q13.3a"; transcript_id "ERVLE_4q13.3a"; locus "ERVLE_4q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0994"; repClass "LTR"; repEnd "4509"; repFamily "ERVL"; repLeft "-1158"; repStart "4054"; chr4 rmsk exon 69544971 69545098 309 + . gene_id "ERVLE_4q13.3a"; transcript_id "ERVLE_4q13.3a"; locus "ERVLE_4q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0994"; repClass "LTR"; repEnd "4989"; repFamily "ERVL"; repLeft "-678"; repStart "4858"; ### MER41_4q13.3 ### chr4 rmsk gene 69768435 69773984 . + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; category "unknown"; intModel "MER41-int"; locid "MER41-int_0132"; model_cov "5044"; model_pct "84.8"; chr4 rmsk exon 69768435 69768987 4068 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0132"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 69769063 69769117 375 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0132"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-5888"; repStart "1"; chr4 rmsk exon 69769120 69769205 653 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0132"; repClass "LTR"; repEnd "201"; repFamily "ERV1"; repLeft "-353"; repStart "116"; chr4 rmsk exon 69769206 69770145 4640 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0132"; repClass "LTR"; repEnd "1080"; repFamily "ERV1"; repLeft "-4866"; repStart "59"; chr4 rmsk exon 69770678 69772316 11454 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0132"; repClass "LTR"; repEnd "5023"; repFamily "ERV1"; repLeft "-923"; repStart "1977"; chr4 rmsk exon 69772614 69773518 11454 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0132"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5024"; chr4 rmsk exon 69773519 69773984 3828 + . gene_id "MER41_4q13.3"; transcript_id "MER41_4q13.3"; locus "MER41_4q13.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0132"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-107"; repStart "1"; ### HERV3_4q13.3a ### chr4 rmsk gene 69823038 69824561 . - . gene_id "HERV3_4q13.3a"; transcript_id "HERV3_4q13.3a"; locus "HERV3_4q13.3a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0017"; model_cov "1265"; model_pct "15.0"; chr4 rmsk exon 69823038 69823286 802 - . gene_id "HERV3_4q13.3a"; transcript_id "HERV3_4q13.3a"; locus "HERV3_4q13.3a"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0017"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "317"; repStart "0"; chr4 rmsk exon 69823296 69824561 7326 - . gene_id "HERV3_4q13.3a"; transcript_id "HERV3_4q13.3a"; locus "HERV3_4q13.3a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0017"; repClass "LTR"; repEnd "4967"; repFamily "ERV1"; repLeft "3702"; repStart "-3459"; ### HERV9_4q13.3 ### chr4 rmsk gene 69824563 69828660 . + . gene_id "HERV9_4q13.3"; transcript_id "HERV9_4q13.3"; locus "HERV9_4q13.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0045"; model_cov "2892"; model_pct "34.3"; chr4 rmsk exon 69824563 69825399 4419 + . gene_id "HERV9_4q13.3"; transcript_id "HERV9_4q13.3"; locus "HERV9_4q13.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0045"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 69825400 69828194 14326 + . gene_id "HERV9_4q13.3"; transcript_id "HERV9_4q13.3"; locus "HERV9_4q13.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0045"; repClass "LTR"; repEnd "2893"; repFamily "ERV1"; repLeft "-5543"; repStart "1"; chr4 rmsk exon 69828195 69828660 3651 + . gene_id "HERV9_4q13.3"; transcript_id "HERV9_4q13.3"; locus "HERV9_4q13.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0045"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "223"; ### HERV3_4q13.3b ### chr4 rmsk gene 69828661 69833104 . - . gene_id "HERV3_4q13.3b"; transcript_id "HERV3_4q13.3b"; locus "HERV3_4q13.3b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0018"; model_cov "3703"; model_pct "43.9"; chr4 rmsk exon 69828661 69832374 18350 - . gene_id "HERV3_4q13.3b"; transcript_id "HERV3_4q13.3b"; locus "HERV3_4q13.3b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0018"; repClass "LTR"; repEnd "3704"; repFamily "ERV1"; repLeft "1"; repStart "-4722"; chr4 rmsk exon 69832375 69833104 1690 - . gene_id "HERV3_4q13.3b"; transcript_id "HERV3_4q13.3b"; locus "HERV3_4q13.3b"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0018"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_4q13.3a ### chr4 rmsk gene 69865342 69868580 . + . gene_id "ERVL_4q13.3a"; transcript_id "ERVL_4q13.3a"; locus "ERVL_4q13.3a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0103"; model_cov "2614"; model_pct "45.4"; chr4 rmsk exon 69865342 69865800 2655 + . gene_id "ERVL_4q13.3a"; transcript_id "ERVL_4q13.3a"; locus "ERVL_4q13.3a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0103"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "-11"; repStart "55"; chr4 rmsk exon 69866192 69867996 7168 + . gene_id "ERVL_4q13.3a"; transcript_id "ERVL_4q13.3a"; locus "ERVL_4q13.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0103"; repClass "LTR"; repEnd "1766"; repFamily "ERVL"; repLeft "-3991"; repStart "4"; chr4 rmsk exon 69867993 69868580 2434 + . gene_id "ERVL_4q13.3a"; transcript_id "ERVL_4q13.3a"; locus "ERVL_4q13.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0103"; repClass "LTR"; repEnd "3730"; repFamily "ERVL"; repLeft "-2027"; repStart "2878"; ### MER4_4q13.3a ### chr4 rmsk gene 69868585 69873269 . + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0218"; model_cov "3975"; model_pct "60.2"; chr4 rmsk exon 69868585 69869545 6073 + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0218"; repClass "LTR"; repEnd "2477"; repFamily "ERV1"; repLeft "-4121"; repStart "1498"; chr4 rmsk exon 69869554 69869790 787 + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0218"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "3448"; chr4 rmsk exon 69869785 69870079 15474 + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0218"; repClass "LTR"; repEnd "4135"; repFamily "ERV1"; repLeft "-2463"; repStart "3837"; chr4 rmsk exon 69870434 69872814 15474 + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0218"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4136"; chr4 rmsk exon 69872821 69873269 2904 + . gene_id "MER4_4q13.3a"; transcript_id "MER4_4q13.3a"; locus "MER4_4q13.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0218"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q13.3b ### chr4 rmsk gene 69947660 69948730 . - . gene_id "ERVLE_4q13.3b"; transcript_id "ERVLE_4q13.3b"; locus "ERVLE_4q13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0996"; model_cov "816"; model_pct "14.4"; chr4 rmsk exon 69947660 69947905 484 - . gene_id "ERVLE_4q13.3b"; transcript_id "ERVLE_4q13.3b"; locus "ERVLE_4q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0996"; repClass "LTR"; repEnd "2322"; repFamily "ERVL"; repLeft "2059"; repStart "-3345"; chr4 rmsk exon 69948194 69948730 484 - . gene_id "ERVLE_4q13.3b"; transcript_id "ERVLE_4q13.3b"; locus "ERVLE_4q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0996"; repClass "LTR"; repEnd "2058"; repFamily "ERVL"; repLeft "1505"; repStart "-3609"; ### MER4B_4q13.3a ### chr4 rmsk gene 70042053 70043769 . - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0132"; model_cov "1454"; model_pct "21.5"; chr4 rmsk exon 70042053 70042428 2147 - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0132"; repClass "LTR"; repEnd "2822"; repFamily "ERV1"; repLeft "2428"; repStart "-3936"; chr4 rmsk exon 70042430 70042758 1157 - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0132"; repClass "LTR"; repEnd "2152"; repFamily "ERV1"; repLeft "1835"; repStart "-4606"; chr4 rmsk exon 70042756 70043210 2520 - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0132"; repClass "LTR"; repEnd "698"; repFamily "ERV1"; repLeft "239"; repStart "-6060"; chr4 rmsk exon 70043254 70043539 1835 - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0132"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "1"; repStart "-6473"; chr4 rmsk exon 70043540 70043769 1302 - . gene_id "MER4B_4q13.3a"; transcript_id "MER4B_4q13.3a"; locus "MER4B_4q13.3a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0132"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "543"; repStart "0"; ### MER4B_4q13.3b ### chr4 rmsk gene 70061471 70064962 . - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0133"; model_cov "2708"; model_pct "40.1"; chr4 rmsk exon 70061471 70063119 10240 - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0133"; repClass "LTR"; repEnd "4107"; repFamily "ERV1"; repLeft "2429"; repStart "-2651"; chr4 rmsk exon 70063123 70063458 1323 - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0133"; repClass "LTR"; repEnd "2151"; repFamily "ERV1"; repLeft "1835"; repStart "-4607"; chr4 rmsk exon 70063456 70063911 2813 - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0133"; repClass "LTR"; repEnd "698"; repFamily "ERV1"; repLeft "238"; repStart "-6060"; chr4 rmsk exon 70064107 70064361 1692 - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0133"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "1"; repStart "-6503"; chr4 rmsk exon 70064362 70064962 2820 - . gene_id "MER4B_4q13.3b"; transcript_id "MER4B_4q13.3b"; locus "MER4B_4q13.3b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0133"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; ### ERVLE_4q13.3c ### chr4 rmsk gene 70394339 70395004 . - . gene_id "ERVLE_4q13.3c"; transcript_id "ERVLE_4q13.3c"; locus "ERVLE_4q13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0997"; model_cov "767"; model_pct "13.5"; chr4 rmsk exon 70394339 70394622 996 - . gene_id "ERVLE_4q13.3c"; transcript_id "ERVLE_4q13.3c"; locus "ERVLE_4q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0997"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "4872"; repStart "-506"; chr4 rmsk exon 70394628 70395004 879 - . gene_id "ERVLE_4q13.3c"; transcript_id "ERVLE_4q13.3c"; locus "ERVLE_4q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0997"; repClass "LTR"; repEnd "4703"; repFamily "ERVL"; repLeft "4225"; repStart "-964"; ### ERVL_4q13.3b ### chr4 rmsk gene 70485524 70487672 . - . gene_id "ERVL_4q13.3b"; transcript_id "ERVL_4q13.3b"; locus "ERVL_4q13.3b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0104"; model_cov "1289"; model_pct "22.4"; chr4 rmsk exon 70485524 70486075 2229 - . gene_id "ERVL_4q13.3b"; transcript_id "ERVL_4q13.3b"; locus "ERVL_4q13.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0104"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr4 rmsk exon 70486076 70486572 2386 - . gene_id "ERVL_4q13.3b"; transcript_id "ERVL_4q13.3b"; locus "ERVL_4q13.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0104"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5287"; repStart "0"; chr4 rmsk exon 70486643 70487477 4920 - . gene_id "ERVL_4q13.3b"; transcript_id "ERVL_4q13.3b"; locus "ERVL_4q13.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0104"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "4444"; repStart "-494"; chr4 rmsk exon 70487606 70487672 321 - . gene_id "ERVL_4q13.3b"; transcript_id "ERVL_4q13.3b"; locus "ERVL_4q13.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0104"; repClass "LTR"; repEnd "67"; repFamily "ERVL"; repLeft "1"; repStart "-487"; ### HML6_4q13.3 ### chr4 rmsk gene 70552467 70554689 . - . gene_id "HML6_4q13.3"; transcript_id "HML6_4q13.3"; locus "HML6_4q13.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0018"; model_cov "1203"; model_pct "16.7"; chr4 rmsk exon 70552467 70552638 863 - . gene_id "HML6_4q13.3"; transcript_id "HML6_4q13.3"; locus "HML6_4q13.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0018"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "321"; repStart "0"; chr4 rmsk exon 70552784 70553739 4727 - . gene_id "HML6_4q13.3"; transcript_id "HML6_4q13.3"; locus "HML6_4q13.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0018"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "1280"; repStart "-4934"; chr4 rmsk exon 70553883 70554101 596 - . gene_id "HML6_4q13.3"; transcript_id "HML6_4q13.3"; locus "HML6_4q13.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0018"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "17"; repStart "-6970"; chr4 rmsk exon 70554366 70554689 1745 - . gene_id "HML6_4q13.3"; transcript_id "HML6_4q13.3"; locus "HML6_4q13.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0018"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "158"; repStart "0"; ### ERVLE_4q13.3d ### chr4 rmsk gene 70609115 70612106 . - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_0998"; model_cov "2129"; model_pct "37.6"; chr4 rmsk exon 70609115 70609563 1347 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "4142"; repFamily "ERVL"; repLeft "3685"; repStart "-1525"; chr4 rmsk exon 70609656 70609900 698 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "3472"; repFamily "ERVL"; repLeft "3219"; repStart "-2195"; chr4 rmsk exon 70609898 70610011 315 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "3198"; repFamily "ERVL"; repLeft "3073"; repStart "-2469"; chr4 rmsk exon 70610072 70610878 1651 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "2942"; repFamily "ERVL"; repLeft "2070"; repStart "-2725"; chr4 rmsk exon 70611593 70611740 321 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "1843"; repFamily "ERVL"; repLeft "1697"; repStart "-3824"; chr4 rmsk exon 70611853 70612106 478 - . gene_id "ERVLE_4q13.3d"; transcript_id "ERVLE_4q13.3d"; locus "ERVLE_4q13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_0998"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "1325"; repStart "-4066"; ### ERVLB4_4q13.3 ### chr4 rmsk gene 70868693 70871040 . - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0460"; model_cov "1055"; model_pct "18.5"; chr4 rmsk exon 70868693 70869358 4668 - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0460"; repClass "LTR"; repEnd "5350"; repFamily "ERVL"; repLeft "4700"; repStart "-364"; chr4 rmsk exon 70869525 70869757 4668 - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0460"; repClass "LTR"; repEnd "4694"; repFamily "ERVL"; repLeft "4489"; repStart "-1020"; chr4 rmsk exon 70870071 70870267 4668 - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0460"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4288"; repStart "-1226"; chr4 rmsk exon 70870311 70870577 1816 - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0460"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "172"; repStart "-203"; chr4 rmsk exon 70870877 70871040 1816 - . gene_id "ERVLB4_4q13.3"; transcript_id "ERVLB4_4q13.3"; locus "ERVLB4_4q13.3"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0460"; repClass "LTR"; repEnd "171"; repFamily "ERVL"; repLeft "1"; repStart "-492"; ### HERVH_4q13.3 ### chr4 rmsk gene 71031810 71037274 . + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0374"; model_cov "5316"; model_pct "68.9"; chr4 rmsk exon 71031810 71031920 771 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "350"; chr4 rmsk exon 71031921 71033061 3614 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "1456"; repFamily "ERV1"; repLeft "-6257"; repStart "1"; chr4 rmsk exon 71033057 71034772 9119 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1147"; chr4 rmsk exon 71034773 71036032 3842 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4416"; chr4 rmsk exon 71036023 71036282 1351 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr4 rmsk exon 71036276 71036834 3504 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr4 rmsk exon 71036835 71037274 2360 + . gene_id "HERVH_4q13.3"; transcript_id "HERVH_4q13.3"; locus "HERVH_4q13.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0374"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### MER4_4q13.3b ### chr4 rmsk gene 71636621 71638297 . + . gene_id "MER4_4q13.3b"; transcript_id "MER4_4q13.3b"; locus "MER4_4q13.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0220"; model_cov "1116"; model_pct "16.9"; chr4 rmsk exon 71636621 71637415 6336 + . gene_id "MER4_4q13.3b"; transcript_id "MER4_4q13.3b"; locus "MER4_4q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0220"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "-285"; repStart "5479"; chr4 rmsk exon 71637713 71637999 6336 + . gene_id "MER4_4q13.3b"; transcript_id "MER4_4q13.3b"; locus "MER4_4q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0220"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6314"; chr4 rmsk exon 71638034 71638297 1718 + . gene_id "MER4_4q13.3b"; transcript_id "MER4_4q13.3b"; locus "MER4_4q13.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0220"; repClass "LTR"; repEnd "315"; repFamily "ERV1"; repLeft "-157"; repStart "55"; ### HARLEQUIN_4q13.3 ### chr4 rmsk gene 71638298 71645983 . + . gene_id "HARLEQUIN_4q13.3"; transcript_id "HARLEQUIN_4q13.3"; locus "HARLEQUIN_4q13.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0060"; model_cov "6890"; model_pct "99.9"; chr4 rmsk exon 71638298 71638764 3632 + . gene_id "HARLEQUIN_4q13.3"; transcript_id "HARLEQUIN_4q13.3"; locus "HARLEQUIN_4q13.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0060"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 71638770 71645529 45296 + . gene_id "HARLEQUIN_4q13.3"; transcript_id "HARLEQUIN_4q13.3"; locus "HARLEQUIN_4q13.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0060"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6"; chr4 rmsk exon 71645530 71645983 3497 + . gene_id "HARLEQUIN_4q13.3"; transcript_id "HARLEQUIN_4q13.3"; locus "HARLEQUIN_4q13.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0060"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q13.3a ### chr4 rmsk gene 71650206 71652465 . + . gene_id "ERV316A3_4q13.3a"; transcript_id "ERV316A3_4q13.3a"; locus "ERV316A3_4q13.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0724"; model_cov "1770"; model_pct "33.9"; chr4 rmsk exon 71650206 71650247 250 + . gene_id "ERV316A3_4q13.3a"; transcript_id "ERV316A3_4q13.3a"; locus "ERV316A3_4q13.3a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0724"; repClass "LTR"; repEnd "43"; repFamily "ERVL"; repLeft "-446"; repStart "2"; chr4 rmsk exon 71650307 71650622 454 + . gene_id "ERV316A3_4q13.3a"; transcript_id "ERV316A3_4q13.3a"; locus "ERV316A3_4q13.3a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0724"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-33"; repStart "124"; chr4 rmsk exon 71650641 71650749 281 + . gene_id "ERV316A3_4q13.3a"; transcript_id "ERV316A3_4q13.3a"; locus "ERV316A3_4q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0724"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "-4884"; repStart "231"; chr4 rmsk exon 71650793 71652465 2011 + . gene_id "ERV316A3_4q13.3a"; transcript_id "ERV316A3_4q13.3a"; locus "ERV316A3_4q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0724"; repClass "LTR"; repEnd "2250"; repFamily "ERVL"; repLeft "-2976"; repStart "591"; ### HML5_4q13.3 ### chr4 rmsk gene 71804110 71810377 . - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; category "tandem*"; intModel "HERVK22-int"; locid "HERVK22-int_0032"; model_cov "3760"; model_pct "55.0"; chr4 rmsk exon 71804110 71804374 749 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "201"; repStart "0"; chr4 rmsk exon 71804383 71804442 458 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "2307"; repFamily "ERVK"; repLeft "2248"; repStart "-4530"; chr4 rmsk exon 71804442 71804808 2493 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "607"; repStart "-5856"; chr4 rmsk exon 71804938 71805398 3033 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "486"; repFamily "ERVK"; repLeft "3"; repStart "-6351"; chr4 rmsk exon 71805401 71805860 2734 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 71805861 71806663 4230 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "4700"; repStart "-1502"; chr4 rmsk exon 71806668 71808953 15849 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "4516"; repFamily "ERVK"; repLeft "2248"; repStart "-2321"; chr4 rmsk exon 71808953 71809319 2477 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "607"; repStart "-5856"; chr4 rmsk exon 71809449 71809913 3130 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "486"; repFamily "ERVK"; repLeft "3"; repStart "-6351"; chr4 rmsk exon 71809916 71810377 2741 - . gene_id "HML5_4q13.3"; transcript_id "HML5_4q13.3"; locus "HML5_4q13.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0032"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4B_4q13.3c ### chr4 rmsk gene 71855655 71861305 . - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0134"; model_cov "4326"; model_pct "64.0"; chr4 rmsk exon 71855655 71856263 2758 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr4 rmsk exon 71856267 71857844 12276 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5081"; repStart "0"; chr4 rmsk exon 71858352 71859008 12276 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "5080"; repFamily "ERV1"; repLeft "4438"; repStart "-1678"; chr4 rmsk exon 71858993 71859637 4125 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3424"; repStart "-2670"; chr4 rmsk exon 71859627 71860248 8930 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "2487"; repStart "-3663"; chr4 rmsk exon 71860555 71861305 8930 - . gene_id "MER4B_4q13.3c"; transcript_id "MER4B_4q13.3c"; locus "MER4B_4q13.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0134"; repClass "LTR"; repEnd "2486"; repFamily "ERV1"; repLeft "1751"; repStart "-4272"; ### MER4B_4q13.3d ### chr4 rmsk gene 71861601 71865827 . - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0135"; model_cov "2435"; model_pct "36.0"; chr4 rmsk exon 71861601 71862674 8930 - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0135"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "1428"; repStart "-4105"; chr4 rmsk exon 71862806 71862903 258 - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0135"; repClass "LTR"; repEnd "2405"; repFamily "ERV1"; repLeft "2309"; repStart "-4353"; chr4 rmsk exon 71864048 71864328 1292 - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0135"; repClass "LTR"; repEnd "1196"; repFamily "ERV1"; repLeft "924"; repStart "-5562"; chr4 rmsk exon 71864354 71865186 5201 - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0135"; repClass "LTR"; repEnd "843"; repFamily "ERV1"; repLeft "1"; repStart "-5915"; chr4 rmsk exon 71865187 71865827 2403 - . gene_id "MER4B_4q13.3d"; transcript_id "MER4B_4q13.3d"; locus "MER4B_4q13.3d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0135"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; ### MER101_4q13.3 ### chr4 rmsk gene 72002457 72005968 . + . gene_id "MER101_4q13.3"; transcript_id "MER101_4q13.3"; locus "MER101_4q13.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0120"; model_cov "2674"; model_pct "40.3"; chr4 rmsk exon 72002457 72002802 1504 + . gene_id "MER101_4q13.3"; transcript_id "MER101_4q13.3"; locus "MER101_4q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0120"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "-3873"; repStart "2413"; chr4 rmsk exon 72002927 72005049 6674 + . gene_id "MER101_4q13.3"; transcript_id "MER101_4q13.3"; locus "MER101_4q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0120"; repClass "LTR"; repEnd "4600"; repFamily "ERV1"; repLeft "-2039"; repStart "2753"; chr4 rmsk exon 72005075 72005514 1625 + . gene_id "MER101_4q13.3"; transcript_id "MER101_4q13.3"; locus "MER101_4q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0120"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6165"; chr4 rmsk exon 72005515 72005968 2443 + . gene_id "MER101_4q13.3"; transcript_id "MER101_4q13.3"; locus "MER101_4q13.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0120"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q13.3e ### chr4 rmsk gene 72058779 72060937 . - . gene_id "ERVLE_4q13.3e"; transcript_id "ERVLE_4q13.3e"; locus "ERVLE_4q13.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1000"; model_cov "1802"; model_pct "31.8"; chr4 rmsk exon 72058779 72059423 998 - . gene_id "ERVLE_4q13.3e"; transcript_id "ERVLE_4q13.3e"; locus "ERVLE_4q13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1000"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "2879"; repStart "-2224"; chr4 rmsk exon 72059442 72060131 1626 - . gene_id "ERVLE_4q13.3e"; transcript_id "ERVLE_4q13.3e"; locus "ERVLE_4q13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1000"; repClass "LTR"; repEnd "2368"; repFamily "ERVL"; repLeft "1592"; repStart "-3299"; chr4 rmsk exon 72060310 72060512 517 - . gene_id "ERVLE_4q13.3e"; transcript_id "ERVLE_4q13.3e"; locus "ERVLE_4q13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1000"; repClass "LTR"; repEnd "1422"; repFamily "ERVL"; repLeft "1215"; repStart "-4245"; chr4 rmsk exon 72060670 72060937 529 - . gene_id "ERVLE_4q13.3e"; transcript_id "ERVLE_4q13.3e"; locus "ERVLE_4q13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1000"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "102"; repStart "-5310"; ### ERVLE_4q13.3f ### chr4 rmsk gene 72380086 72382130 . + . gene_id "ERVLE_4q13.3f"; transcript_id "ERVLE_4q13.3f"; locus "ERVLE_4q13.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1001"; model_cov "2184"; model_pct "38.5"; chr4 rmsk exon 72380086 72382130 1767 + . gene_id "ERVLE_4q13.3f"; transcript_id "ERVLE_4q13.3f"; locus "ERVLE_4q13.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1001"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "-1505"; repStart "1978"; ### ERV316A3_4q13.3b ### chr4 rmsk gene 72670903 72671454 . + . gene_id "ERV316A3_4q13.3b"; transcript_id "ERV316A3_4q13.3b"; locus "ERV316A3_4q13.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0727"; model_cov "592"; model_pct "11.3"; chr4 rmsk exon 72670903 72671454 753 + . gene_id "ERV316A3_4q13.3b"; transcript_id "ERV316A3_4q13.3b"; locus "ERV316A3_4q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0727"; repClass "LTR"; repEnd "1020"; repFamily "ERVL"; repLeft "-4206"; repStart "428"; ### ERV316A3_4q13.3c ### chr4 rmsk gene 72685737 72686314 . + . gene_id "ERV316A3_4q13.3c"; transcript_id "ERV316A3_4q13.3c"; locus "ERV316A3_4q13.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0729"; model_cov "739"; model_pct "14.1"; chr4 rmsk exon 72685737 72685831 362 + . gene_id "ERV316A3_4q13.3c"; transcript_id "ERV316A3_4q13.3c"; locus "ERV316A3_4q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0729"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "-2630"; repStart "2501"; chr4 rmsk exon 72685862 72686314 1460 + . gene_id "ERV316A3_4q13.3c"; transcript_id "ERV316A3_4q13.3c"; locus "ERV316A3_4q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0729"; repClass "LTR"; repEnd "2886"; repFamily "ERVL"; repLeft "-2340"; repStart "2242"; ### HERVW_4q13.3a ### chr4 rmsk gene 72925576 72930782 . - . gene_id "HERVW_4q13.3a"; transcript_id "HERVW_4q13.3a"; locus "HERVW_4q13.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0094"; model_cov "4426"; model_pct "51.3"; chr4 rmsk exon 72925576 72926423 5904 - . gene_id "HERVW_4q13.3a"; transcript_id "HERVW_4q13.3a"; locus "HERVW_4q13.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0094"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 72926424 72928145 13186 - . gene_id "HERVW_4q13.3a"; transcript_id "HERVW_4q13.3a"; locus "HERVW_4q13.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0094"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6902"; repStart "0"; chr4 rmsk exon 72928137 72930782 24643 - . gene_id "HERVW_4q13.3a"; transcript_id "HERVW_4q13.3a"; locus "HERVW_4q13.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0094"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "2365"; repStart "-3559"; ### HERVW_4q13.3b ### chr4 rmsk gene 72930857 72933186 . - . gene_id "HERVW_4q13.3b"; transcript_id "HERVW_4q13.3b"; locus "HERVW_4q13.3b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0095"; model_cov "1581"; model_pct "18.3"; chr4 rmsk exon 72930857 72931526 24643 - . gene_id "HERVW_4q13.3b"; transcript_id "HERVW_4q13.3b"; locus "HERVW_4q13.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0095"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "4382"; repStart "-3559"; chr4 rmsk exon 72931524 72932248 5530 - . gene_id "HERVW_4q13.3b"; transcript_id "HERVW_4q13.3b"; locus "HERVW_4q13.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0095"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "1147"; repStart "-6762"; chr4 rmsk exon 72932247 72932426 1394 - . gene_id "HERVW_4q13.3b"; transcript_id "HERVW_4q13.3b"; locus "HERVW_4q13.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0095"; repClass "LTR"; repEnd "180"; repFamily "ERV1"; repLeft "1"; repStart "-8446"; chr4 rmsk exon 72932427 72933186 5885 - . gene_id "HERVW_4q13.3b"; transcript_id "HERVW_4q13.3b"; locus "HERVW_4q13.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0095"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_4q13.3e ### chr4 rmsk gene 73293238 73297019 . + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0136"; model_cov "2809"; model_pct "41.6"; chr4 rmsk exon 73293238 73293779 3232 + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0136"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3507"; chr4 rmsk exon 73293779 73295535 11348 + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0136"; repClass "LTR"; repEnd "6309"; repFamily "ERV1"; repLeft "-449"; repStart "4452"; chr4 rmsk exon 73295769 73296140 2514 + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0136"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6387"; chr4 rmsk exon 73296141 73296230 2679 + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0136"; repClass "LTR"; repEnd "87"; repFamily "ERV1"; repLeft "-523"; repStart "1"; chr4 rmsk exon 73296529 73297019 2679 + . gene_id "MER4B_4q13.3e"; transcript_id "MER4B_4q13.3e"; locus "MER4B_4q13.3e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0136"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "-30"; repStart "-68"; ### ERVLE_4q13.3g ### chr4 rmsk gene 73313544 73317374 . + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1002"; model_cov "1541"; model_pct "27.2"; chr4 rmsk exon 73313544 73313951 472 + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1002"; repClass "LTR"; repEnd "805"; repFamily "ERVL"; repLeft "-4862"; repStart "389"; chr4 rmsk exon 73315378 73315887 827 + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1002"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1544"; repStart "3563"; chr4 rmsk exon 73316756 73316866 344 + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1002"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "-1230"; repStart "4323"; chr4 rmsk exon 73316891 73317179 540 + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1002"; repClass "LTR"; repEnd "4808"; repFamily "ERVL"; repLeft "-859"; repStart "4516"; chr4 rmsk exon 73317213 73317374 296 + . gene_id "ERVLE_4q13.3g"; transcript_id "ERVLE_4q13.3g"; locus "ERVLE_4q13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1002"; repClass "LTR"; repEnd "4977"; repFamily "ERVL"; repLeft "-690"; repStart "4818"; ### HML3_4q13.3a ### chr4 rmsk gene 73357146 73360149 . + . gene_id "HML3_4q13.3a"; transcript_id "HML3_4q13.3a"; locus "HML3_4q13.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0060"; model_cov "2511"; model_pct "41.7"; chr4 rmsk exon 73357146 73357653 3978 + . gene_id "HML3_4q13.3a"; transcript_id "HML3_4q13.3a"; locus "HML3_4q13.3a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0060"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "2"; chr4 rmsk exon 73357654 73360149 19993 + . gene_id "HML3_4q13.3a"; transcript_id "HML3_4q13.3a"; locus "HML3_4q13.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0060"; repClass "LTR"; repEnd "2512"; repFamily "ERVK"; repLeft "-3509"; repStart "1"; ### HML3_4q13.3b ### chr4 rmsk gene 73366253 73370272 . + . gene_id "HML3_4q13.3b"; transcript_id "HML3_4q13.3b"; locus "HML3_4q13.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0061"; model_cov "3525"; model_pct "58.5"; chr4 rmsk exon 73366253 73369762 28112 + . gene_id "HML3_4q13.3b"; transcript_id "HML3_4q13.3b"; locus "HML3_4q13.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0061"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "2496"; chr4 rmsk exon 73369763 73370272 3974 + . gene_id "HML3_4q13.3b"; transcript_id "HML3_4q13.3b"; locus "HML3_4q13.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0061"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_4q13.3e ### chr4 rmsk gene 73657151 73659609 . + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; category "insert*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0730"; model_cov "1611"; model_pct "30.8"; chr4 rmsk exon 73657151 73657652 694 + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0730"; repClass "LTR"; repEnd "1673"; repFamily "ERVL"; repLeft "-3553"; repStart "1130"; chr4 rmsk exon 73657652 73658372 1595 + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0730"; repClass "LTR"; repEnd "2661"; repFamily "ERVL"; repLeft "-2565"; repStart "1989"; chr4 rmsk exon 73658388 73659021 1005 + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0730"; prev_strand "-"; repClass "LTR"; repEnd "4522"; repFamily "ERVL"; repLeft "3949"; repStart "-704"; chr4 rmsk exon 73659033 73659418 1277 + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0730"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4830"; chr4 rmsk exon 73659473 73659609 411 + . gene_id "ERV316A3_4q13.3e"; transcript_id "ERV316A3_4q13.3e"; locus "ERV316A3_4q13.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0730"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "-197"; repStart "109"; ### HML4_4q13.3 ### chr4 rmsk gene 73665456 73671857 . - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0008"; model_cov "4658"; model_pct "57.4"; chr4 rmsk exon 73665456 73666445 7904 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 73666446 73669843 11569 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "4036"; repStart "0"; chr4 rmsk exon 73669892 73670018 528 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "4113"; repFamily "ERVK"; repLeft "3987"; repStart "-4003"; chr4 rmsk exon 73670095 73670230 560 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "1229"; repFamily "ERVK"; repLeft "1092"; repStart "-6887"; chr4 rmsk exon 73670563 73670669 366 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "834"; repFamily "ERVK"; repLeft "727"; repStart "-7282"; chr4 rmsk exon 73670661 73670864 1189 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "209"; repFamily "ERVK"; repLeft "1"; repStart "-7907"; chr4 rmsk exon 73670865 73671857 7968 - . gene_id "HML4_4q13.3"; transcript_id "HML4_4q13.3"; locus "HML4_4q13.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0008"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_4q13.3a ### chr4 rmsk gene 73763231 73764647 . + . gene_id "HUERSP2_4q13.3a"; transcript_id "HUERSP2_4q13.3a"; locus "HUERSP2_4q13.3a"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0041"; model_cov "471"; model_pct "15.3"; chr4 rmsk exon 73763231 73764144 5693 + . gene_id "HUERSP2_4q13.3a"; transcript_id "HUERSP2_4q13.3a"; locus "HUERSP2_4q13.3a"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0041"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 73764148 73764219 254 + . gene_id "HUERSP2_4q13.3a"; transcript_id "HUERSP2_4q13.3a"; locus "HUERSP2_4q13.3a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0041"; repClass "LTR"; repEnd "-3932"; repFamily "ERV1"; repLeft "-7020"; repStart "-3997"; chr4 rmsk exon 73764262 73764647 1290 + . gene_id "HUERSP2_4q13.3a"; transcript_id "HUERSP2_4q13.3a"; locus "HUERSP2_4q13.3a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0041"; repClass "LTR"; repEnd "-3416"; repFamily "ERV1"; repLeft "-6504"; repStart "-3822"; ### HERVL_4q13.3b ### chr4 rmsk gene 73764648 73768896 . - . gene_id "HERVL_4q13.3b"; transcript_id "HERVL_4q13.3b"; locus "HERVL_4q13.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0382"; model_cov "3751"; model_pct "66.3"; chr4 rmsk exon 73764648 73765183 2248 - . gene_id "HERVL_4q13.3b"; transcript_id "HERVL_4q13.3b"; locus "HERVL_4q13.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0382"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 73765184 73768896 27344 - . gene_id "HERVL_4q13.3b"; transcript_id "HERVL_4q13.3b"; locus "HERVL_4q13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0382"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1903"; repStart "0"; ### HUERSP2_4q13.3b ### chr4 rmsk gene 73768886 73771249 . + . gene_id "HUERSP2_4q13.3b"; transcript_id "HUERSP2_4q13.3b"; locus "HUERSP2_4q13.3b"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0042"; model_cov "1397"; model_pct "45.2"; chr4 rmsk exon 73768886 73770298 6994 + . gene_id "HUERSP2_4q13.3b"; transcript_id "HUERSP2_4q13.3b"; locus "HUERSP2_4q13.3b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0042"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "1691"; chr4 rmsk exon 73770299 73771249 6002 + . gene_id "HUERSP2_4q13.3b"; transcript_id "HUERSP2_4q13.3b"; locus "HUERSP2_4q13.3b"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0042"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK11_4q13.3 ### chr4 rmsk gene 73949407 73954212 . - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0027"; model_cov "3731"; model_pct "46.9"; chr4 rmsk exon 73949407 73950072 5206 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "6295"; repFamily "ERVK"; repLeft "5627"; repStart "-1658"; chr4 rmsk exon 73950072 73950125 344 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "5571"; repFamily "ERVK"; repLeft "5467"; repStart "-2382"; chr4 rmsk exon 73950117 73951804 12603 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "2912"; repStart "-3352"; chr4 rmsk exon 73951797 73952375 2810 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "1165"; repStart "-6368"; chr4 rmsk exon 73952376 73953144 3016 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "1"; repStart "-7102"; chr4 rmsk exon 73953145 73954212 6914 - . gene_id "HERVK11_4q13.3"; transcript_id "HERVK11_4q13.3"; locus "HERVK11_4q13.3"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0027"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### MER4_4q13.3c ### chr4 rmsk gene 74063120 74065376 . + . gene_id "MER4_4q13.3c"; transcript_id "MER4_4q13.3c"; locus "MER4_4q13.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0221"; model_cov "1857"; model_pct "28.1"; chr4 rmsk exon 74063120 74064949 7866 + . gene_id "MER4_4q13.3c"; transcript_id "MER4_4q13.3c"; locus "MER4_4q13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0221"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4741"; chr4 rmsk exon 74064952 74065376 2320 + . gene_id "MER4_4q13.3c"; transcript_id "MER4_4q13.3c"; locus "MER4_4q13.3c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0221"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_4q13.3 ### chr4 rmsk gene 74082718 74093615 . + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0051"; model_cov "7757"; model_pct "100.0"; chr4 rmsk exon 74082718 74083240 3084 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 74083241 74085535 8334 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "2342"; repFamily "ERV1"; repLeft "-5414"; repStart "1"; chr4 rmsk exon 74086670 74087095 30962 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "2770"; repFamily "ERV1"; repLeft "-4986"; repStart "2336"; chr4 rmsk exon 74087406 74088768 30962 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "4133"; repFamily "ERV1"; repLeft "-3623"; repStart "2771"; chr4 rmsk exon 74088866 74089976 30962 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "5246"; repFamily "ERV1"; repLeft "-2510"; repStart "4134"; chr4 rmsk exon 74090274 74092272 30962 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "7265"; repFamily "ERV1"; repLeft "-491"; repStart "5247"; chr4 rmsk exon 74092578 74093074 30962 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "7266"; chr4 rmsk exon 74093075 74093615 3381 + . gene_id "PRIMA41_4q13.3"; transcript_id "PRIMA41_4q13.3"; locus "PRIMA41_4q13.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0051"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_4q13.3 ### chr4 rmsk gene 74433515 74440731 . - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0035"; model_cov "6415"; model_pct "98.1"; chr4 rmsk exon 74433515 74433945 1212 - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0035"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 74433946 74434352 36692 - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0035"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "6130"; repStart "0"; chr4 rmsk exon 74434414 74439303 36692 - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0035"; repClass "LTR"; repEnd "6129"; repFamily "ERV1"; repLeft "1172"; repStart "-410"; chr4 rmsk exon 74439302 74440299 6205 - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0035"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "3"; repStart "-5487"; chr4 rmsk exon 74440302 74440731 1443 - . gene_id "HERV4_4q13.3"; transcript_id "HERV4_4q13.3"; locus "HERV4_4q13.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0035"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q13.3d ### chr4 rmsk gene 75061690 75063481 . - . gene_id "ERV316A3_4q13.3d"; transcript_id "ERV316A3_4q13.3d"; locus "ERV316A3_4q13.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0732"; model_cov "1264"; model_pct "24.2"; chr4 rmsk exon 75061690 75062086 1182 - . gene_id "ERV316A3_4q13.3d"; transcript_id "ERV316A3_4q13.3d"; locus "ERV316A3_4q13.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0732"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "4"; repStart "-7"; chr4 rmsk exon 75062153 75063154 2113 - . gene_id "ERV316A3_4q13.3d"; transcript_id "ERV316A3_4q13.3d"; locus "ERV316A3_4q13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0732"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4158"; repStart "-85"; chr4 rmsk exon 75063203 75063481 1062 - . gene_id "ERV316A3_4q13.3d"; transcript_id "ERV316A3_4q13.3d"; locus "ERV316A3_4q13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0732"; repClass "LTR"; repEnd "3316"; repFamily "ERVL"; repLeft "3035"; repStart "-1910"; ### ERVLE_4q21.1a ### chr4 rmsk gene 75361031 75363410 . + . gene_id "ERVLE_4q21.1a"; transcript_id "ERVLE_4q21.1a"; locus "ERVLE_4q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1005"; model_cov "1881"; model_pct "33.2"; chr4 rmsk exon 75361031 75361190 382 + . gene_id "ERVLE_4q21.1a"; transcript_id "ERVLE_4q21.1a"; locus "ERVLE_4q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1005"; repClass "LTR"; repEnd "3343"; repFamily "ERVL"; repLeft "-2324"; repStart "3174"; chr4 rmsk exon 75361305 75361948 1161 + . gene_id "ERVLE_4q21.1a"; transcript_id "ERVLE_4q21.1a"; locus "ERVLE_4q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1005"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "-1449"; repStart "3469"; chr4 rmsk exon 75361951 75362301 1876 + . gene_id "ERVLE_4q21.1a"; transcript_id "ERVLE_4q21.1a"; locus "ERVLE_4q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1005"; repClass "LTR"; repEnd "4617"; repFamily "ERVL"; repLeft "-1050"; repStart "4244"; chr4 rmsk exon 75362743 75363410 1876 + . gene_id "ERVLE_4q21.1a"; transcript_id "ERVLE_4q21.1a"; locus "ERVLE_4q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1005"; repClass "LTR"; repEnd "5208"; repFamily "ERVL"; repLeft "-459"; repStart "4618"; ### MER41_4q21.1a ### chr4 rmsk gene 75374130 75375774 . + . gene_id "MER41_4q21.1a"; transcript_id "MER41_4q21.1a"; locus "MER41_4q21.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0137"; model_cov "1123"; model_pct "18.9"; chr4 rmsk exon 75374130 75375217 7451 + . gene_id "MER41_4q21.1a"; transcript_id "MER41_4q21.1a"; locus "MER41_4q21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0137"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4821"; chr4 rmsk exon 75375218 75375774 4225 + . gene_id "MER41_4q21.1a"; transcript_id "MER41_4q21.1a"; locus "MER41_4q21.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0137"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q21.1a ### chr4 rmsk gene 75530112 75530967 . - . gene_id "ERV316A3_4q21.1a"; transcript_id "ERV316A3_4q21.1a"; locus "ERV316A3_4q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0733"; model_cov "861"; model_pct "16.5"; chr4 rmsk exon 75530112 75530967 2537 - . gene_id "ERV316A3_4q21.1a"; transcript_id "ERV316A3_4q21.1a"; locus "ERV316A3_4q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0733"; repClass "LTR"; repEnd "3011"; repFamily "ERVL"; repLeft "2150"; repStart "-2215"; ### MER61_4q21.1a ### chr4 rmsk gene 76230620 76234657 . - . gene_id "MER61_4q21.1a"; transcript_id "MER61_4q21.1a"; locus "MER61_4q21.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0120"; model_cov "6044"; model_pct "100.0"; chr4 rmsk exon 76230620 76233572 17064 - . gene_id "MER61_4q21.1a"; transcript_id "MER61_4q21.1a"; locus "MER61_4q21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0120"; repClass "LTR"; repEnd "4458"; repFamily "ERV1"; repLeft "-739"; repStart "-759"; chr4 rmsk exon 76233605 76233708 4865 - . gene_id "MER61_4q21.1a"; transcript_id "MER61_4q21.1a"; locus "MER61_4q21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0120"; repClass "LTR"; repEnd "1461"; repFamily "ERV1"; repLeft "1320"; repStart "-3756"; chr4 rmsk exon 76233738 76234334 2460 - . gene_id "MER61_4q21.1a"; transcript_id "MER61_4q21.1a"; locus "MER61_4q21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0120"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-4510"; chr4 rmsk exon 76234335 76234657 1918 - . gene_id "MER61_4q21.1a"; transcript_id "MER61_4q21.1a"; locus "MER61_4q21.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0120"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4q21.1b ### chr4 rmsk gene 76291860 76295260 . - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1006"; model_cov "1988"; model_pct "35.1"; chr4 rmsk exon 76291860 76292070 473 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "5309"; repFamily "ERVL"; repLeft "5096"; repStart "-358"; chr4 rmsk exon 76292187 76292371 476 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "4923"; repFamily "ERVL"; repLeft "4731"; repStart "-744"; chr4 rmsk exon 76292385 76292458 269 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "4628"; repStart "-896"; chr4 rmsk exon 76292463 76292574 430 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "4357"; repFamily "ERVL"; repLeft "4249"; repStart "-1310"; chr4 rmsk exon 76292876 76293453 1391 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "4194"; repFamily "ERVL"; repLeft "3594"; repStart "-1473"; chr4 rmsk exon 76293466 76293617 444 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "3554"; repFamily "ERVL"; repLeft "3381"; repStart "-2113"; chr4 rmsk exon 76293884 76294129 674 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "3358"; repFamily "ERVL"; repLeft "3074"; repStart "-2309"; chr4 rmsk exon 76294143 76294262 390 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "2911"; repStart "-2628"; chr4 rmsk exon 76295115 76295260 411 - . gene_id "ERVLE_4q21.1b"; transcript_id "ERVLE_4q21.1b"; locus "ERVLE_4q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1006"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "467"; repStart "-5053"; ### ERVLE_4q21.1c ### chr4 rmsk gene 76461515 76462067 . - . gene_id "ERVLE_4q21.1c"; transcript_id "ERVLE_4q21.1c"; locus "ERVLE_4q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1007"; model_cov "594"; model_pct "10.5"; chr4 rmsk exon 76461515 76462067 1524 - . gene_id "ERVLE_4q21.1c"; transcript_id "ERVLE_4q21.1c"; locus "ERVLE_4q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1007"; repClass "LTR"; repEnd "2717"; repFamily "ERVL"; repLeft "2123"; repStart "-2950"; ### ERVLE_4q21.1d ### chr4 rmsk gene 77138715 77140716 . - . gene_id "ERVLE_4q21.1d"; transcript_id "ERVLE_4q21.1d"; locus "ERVLE_4q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1008"; model_cov "2047"; model_pct "36.1"; chr4 rmsk exon 77138715 77140716 5244 - . gene_id "ERVLE_4q21.1d"; transcript_id "ERVLE_4q21.1d"; locus "ERVLE_4q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1008"; repClass "LTR"; repEnd "4152"; repFamily "ERVL"; repLeft "2105"; repStart "-1515"; ### ERV316A3_4q21.1b ### chr4 rmsk gene 77206438 77207431 . - . gene_id "ERV316A3_4q21.1b"; transcript_id "ERV316A3_4q21.1b"; locus "ERV316A3_4q21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0734"; model_cov "766"; model_pct "14.7"; chr4 rmsk exon 77206438 77206619 486 - . gene_id "ERV316A3_4q21.1b"; transcript_id "ERV316A3_4q21.1b"; locus "ERV316A3_4q21.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0734"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "244"; repStart "-49"; chr4 rmsk exon 77206624 77206889 835 - . gene_id "ERV316A3_4q21.1b"; transcript_id "ERV316A3_4q21.1b"; locus "ERV316A3_4q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0734"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "3549"; repStart "-1396"; chr4 rmsk exon 77206901 77207273 807 - . gene_id "ERV316A3_4q21.1b"; transcript_id "ERV316A3_4q21.1b"; locus "ERV316A3_4q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0734"; repClass "LTR"; repEnd "2285"; repFamily "ERVL"; repLeft "1898"; repStart "-2941"; chr4 rmsk exon 77207336 77207431 308 - . gene_id "ERV316A3_4q21.1b"; transcript_id "ERV316A3_4q21.1b"; locus "ERV316A3_4q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0734"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "1793"; repStart "-3335"; ### ERV316A3_4q21.1c ### chr4 rmsk gene 77237871 77239523 . - . gene_id "ERV316A3_4q21.1c"; transcript_id "ERV316A3_4q21.1c"; locus "ERV316A3_4q21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0737"; model_cov "1216"; model_pct "23.3"; chr4 rmsk exon 77237871 77238168 749 - . gene_id "ERV316A3_4q21.1c"; transcript_id "ERV316A3_4q21.1c"; locus "ERV316A3_4q21.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0737"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "108"; repStart "-22"; chr4 rmsk exon 77238256 77238550 699 - . gene_id "ERV316A3_4q21.1c"; transcript_id "ERV316A3_4q21.1c"; locus "ERV316A3_4q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0737"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "4822"; repStart "-81"; chr4 rmsk exon 77238603 77239243 1472 - . gene_id "ERV316A3_4q21.1c"; transcript_id "ERV316A3_4q21.1c"; locus "ERV316A3_4q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0737"; repClass "LTR"; repEnd "4565"; repFamily "ERVL"; repLeft "3905"; repStart "-661"; chr4 rmsk exon 77239320 77239523 439 - . gene_id "ERV316A3_4q21.1c"; transcript_id "ERV316A3_4q21.1c"; locus "ERV316A3_4q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0737"; repClass "LTR"; repEnd "3802"; repFamily "ERVL"; repLeft "3569"; repStart "-1424"; ### ERV316A3_4q21.1d ### chr4 rmsk gene 77294830 77295457 . - . gene_id "ERV316A3_4q21.1d"; transcript_id "ERV316A3_4q21.1d"; locus "ERV316A3_4q21.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0739"; model_cov "648"; model_pct "12.4"; chr4 rmsk exon 77294830 77295457 1077 - . gene_id "ERV316A3_4q21.1d"; transcript_id "ERV316A3_4q21.1d"; locus "ERV316A3_4q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0739"; repClass "LTR"; repEnd "4476"; repFamily "ERVL"; repLeft "3828"; repStart "-750"; ### ERV316A3_4q21.1e ### chr4 rmsk gene 77312798 77314180 . - . gene_id "ERV316A3_4q21.1e"; transcript_id "ERV316A3_4q21.1e"; locus "ERV316A3_4q21.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0741"; model_cov "658"; model_pct "12.6"; chr4 rmsk exon 77312798 77313113 647 - . gene_id "ERV316A3_4q21.1e"; transcript_id "ERV316A3_4q21.1e"; locus "ERV316A3_4q21.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0741"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "110"; repStart "-13"; chr4 rmsk exon 77313208 77313397 602 - . gene_id "ERV316A3_4q21.1e"; transcript_id "ERV316A3_4q21.1e"; locus "ERV316A3_4q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0741"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "4913"; repStart "-107"; chr4 rmsk exon 77313760 77314180 1262 - . gene_id "ERV316A3_4q21.1e"; transcript_id "ERV316A3_4q21.1e"; locus "ERV316A3_4q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0741"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "3916"; repStart "-858"; ### HUERSP3B_4q21.1a ### chr4 rmsk gene 77329767 77332741 . - . gene_id "HUERSP3B_4q21.1a"; transcript_id "HUERSP3B_4q21.1a"; locus "HUERSP3B_4q21.1a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0042"; model_cov "2511"; model_pct "33.9"; chr4 rmsk exon 77329767 77330252 1874 - . gene_id "HUERSP3B_4q21.1a"; transcript_id "HUERSP3B_4q21.1a"; locus "HUERSP3B_4q21.1a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0042"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr4 rmsk exon 77330254 77331718 7330 - . gene_id "HUERSP3B_4q21.1a"; transcript_id "HUERSP3B_4q21.1a"; locus "HUERSP3B_4q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0042"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "5532"; repStart "-7"; chr4 rmsk exon 77331723 77332193 3173 - . gene_id "HUERSP3B_4q21.1a"; transcript_id "HUERSP3B_4q21.1a"; locus "HUERSP3B_4q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0042"; repClass "LTR"; repEnd "3536"; repFamily "ERV1"; repLeft "3073"; repStart "-3882"; chr4 rmsk exon 77332576 77332741 1229 - . gene_id "HUERSP3B_4q21.1a"; transcript_id "HUERSP3B_4q21.1a"; locus "HUERSP3B_4q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0042"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "2489"; repStart "-4760"; ### HUERSP3B_4q21.1b ### chr4 rmsk gene 77342765 77344431 . - . gene_id "HUERSP3B_4q21.1b"; transcript_id "HUERSP3B_4q21.1b"; locus "HUERSP3B_4q21.1b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0043"; model_cov "957"; model_pct "12.9"; chr4 rmsk exon 77342765 77343642 5046 - . gene_id "HUERSP3B_4q21.1b"; transcript_id "HUERSP3B_4q21.1b"; locus "HUERSP3B_4q21.1b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0043"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "1534"; repStart "-4927"; chr4 rmsk exon 77344222 77344431 1053 - . gene_id "HUERSP3B_4q21.1b"; transcript_id "HUERSP3B_4q21.1b"; locus "HUERSP3B_4q21.1b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0043"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "246"; repStart "-6"; ### HERVL_4q21.1 ### chr4 rmsk gene 77362928 77365788 . - . gene_id "HERVL_4q21.1"; transcript_id "HERVL_4q21.1"; locus "HERVL_4q21.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0383"; model_cov "2417"; model_pct "42.7"; chr4 rmsk exon 77362928 77365253 16763 - . gene_id "HERVL_4q21.1"; transcript_id "HERVL_4q21.1"; locus "HERVL_4q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0383"; repClass "LTR"; repEnd "2418"; repFamily "ERVL"; repLeft "1"; repStart "-3236"; chr4 rmsk exon 77365254 77365788 1925 - . gene_id "HERVL_4q21.1"; transcript_id "HERVL_4q21.1"; locus "HERVL_4q21.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0383"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-81"; repStart "0"; ### ERV316A3_4q21.1f ### chr4 rmsk gene 77382464 77384104 . - . gene_id "ERV316A3_4q21.1f"; transcript_id "ERV316A3_4q21.1f"; locus "ERV316A3_4q21.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0743"; model_cov "1356"; model_pct "25.9"; chr4 rmsk exon 77382464 77382796 1011 - . gene_id "ERV316A3_4q21.1f"; transcript_id "ERV316A3_4q21.1f"; locus "ERV316A3_4q21.1f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0743"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "109"; repStart "-13"; chr4 rmsk exon 77382820 77383207 1013 - . gene_id "ERV316A3_4q21.1f"; transcript_id "ERV316A3_4q21.1f"; locus "ERV316A3_4q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0743"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4808"; repStart "-6"; chr4 rmsk exon 77383249 77384104 1127 - . gene_id "ERV316A3_4q21.1f"; transcript_id "ERV316A3_4q21.1f"; locus "ERV316A3_4q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0743"; repClass "LTR"; repEnd "4588"; repFamily "ERVL"; repLeft "3644"; repStart "-638"; ### HML6_4q21.1 ### chr4 rmsk gene 77392282 77400204 . - . gene_id "HML6_4q21.1"; transcript_id "HML6_4q21.1"; locus "HML6_4q21.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0019"; model_cov "7199"; model_pct "100.0"; chr4 rmsk exon 77392282 77392697 2775 - . gene_id "HML6_4q21.1"; transcript_id "HML6_4q21.1"; locus "HML6_4q21.1"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0019"; repClass "LTR"; repEnd "423"; repFamily "ERVK"; repLeft "1"; repStart "-9"; chr4 rmsk exon 77392700 77399769 48678 - . gene_id "HML6_4q21.1"; transcript_id "HML6_4q21.1"; locus "HML6_4q21.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0019"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "1"; repStart "-2"; chr4 rmsk exon 77399785 77400204 3075 - . gene_id "HML6_4q21.1"; transcript_id "HML6_4q21.1"; locus "HML6_4q21.1"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0019"; repClass "LTR"; repEnd "423"; repFamily "ERVK"; repLeft "1"; repStart "-9"; ### ERV316A3_4q21.1g ### chr4 rmsk gene 77408057 77409566 . - . gene_id "ERV316A3_4q21.1g"; transcript_id "ERV316A3_4q21.1g"; locus "ERV316A3_4q21.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0744"; model_cov "898"; model_pct "17.2"; chr4 rmsk exon 77408057 77408384 922 - . gene_id "ERV316A3_4q21.1g"; transcript_id "ERV316A3_4q21.1g"; locus "ERV316A3_4q21.1g"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0744"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "108"; repStart "-13"; chr4 rmsk exon 77408492 77408847 1018 - . gene_id "ERV316A3_4q21.1g"; transcript_id "ERV316A3_4q21.1g"; locus "ERV316A3_4q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0744"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "4740"; repStart "-102"; chr4 rmsk exon 77409113 77409566 1159 - . gene_id "ERV316A3_4q21.1g"; transcript_id "ERV316A3_4q21.1g"; locus "ERV316A3_4q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0744"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "3903"; repStart "-809"; ### ERV316A3_4q21.1h ### chr4 rmsk gene 77419013 77420479 . + . gene_id "ERV316A3_4q21.1h"; transcript_id "ERV316A3_4q21.1h"; locus "ERV316A3_4q21.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0746"; model_cov "1017"; model_pct "19.5"; chr4 rmsk exon 77419013 77419244 479 + . gene_id "ERV316A3_4q21.1h"; transcript_id "ERV316A3_4q21.1h"; locus "ERV316A3_4q21.1h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0746"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "191"; chr4 rmsk exon 77419522 77419731 430 + . gene_id "ERV316A3_4q21.1h"; transcript_id "ERV316A3_4q21.1h"; locus "ERV316A3_4q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0746"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3201"; repStart "1826"; chr4 rmsk exon 77419807 77420479 1244 + . gene_id "ERV316A3_4q21.1h"; transcript_id "ERV316A3_4q21.1h"; locus "ERV316A3_4q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0746"; repClass "LTR"; repEnd "2521"; repFamily "ERVL"; repLeft "-2705"; repStart "1703"; ### ERVLB4_4q21.1a ### chr4 rmsk gene 77428273 77433435 . + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0464"; model_cov "4628"; model_pct "81.0"; chr4 rmsk exon 77428273 77428576 936 + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0464"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "-83"; repStart "1"; chr4 rmsk exon 77428618 77429041 1636 + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0464"; repClass "LTR"; repEnd "681"; repFamily "ERVL"; repLeft "-5033"; repStart "247"; chr4 rmsk exon 77429069 77432012 11948 + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0464"; repClass "LTR"; repEnd "3940"; repFamily "ERVL"; repLeft "-1774"; repStart "781"; chr4 rmsk exon 77432006 77433026 2786 + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0464"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4678"; chr4 rmsk exon 77433027 77433435 804 + . gene_id "ERVLB4_4q21.1a"; transcript_id "ERVLB4_4q21.1a"; locus "ERVLB4_4q21.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0464"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_4q21.1b ### chr4 rmsk gene 77438932 77443854 . + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0465"; model_cov "2723"; model_pct "47.7"; chr4 rmsk exon 77438932 77439193 1252 + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0465"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "-68"; repStart "218"; chr4 rmsk exon 77439414 77440221 4190 + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0465"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "-1904"; repStart "2974"; chr4 rmsk exon 77441286 77442804 8966 + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0465"; repClass "LTR"; repEnd "5462"; repFamily "ERVL"; repLeft "-252"; repStart "3826"; chr4 rmsk exon 77443095 77443283 8966 + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0465"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5463"; chr4 rmsk exon 77443284 77443854 2623 + . gene_id "ERVLB4_4q21.1b"; transcript_id "ERVLB4_4q21.1b"; locus "ERVLB4_4q21.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0465"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_4q21.1i ### chr4 rmsk gene 77453519 77454437 . - . gene_id "ERV316A3_4q21.1i"; transcript_id "ERV316A3_4q21.1i"; locus "ERV316A3_4q21.1i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0749"; model_cov "969"; model_pct "18.5"; chr4 rmsk exon 77453519 77454437 2438 - . gene_id "ERV316A3_4q21.1i"; transcript_id "ERV316A3_4q21.1i"; locus "ERV316A3_4q21.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0749"; repClass "LTR"; repEnd "970"; repFamily "ERVL"; repLeft "1"; repStart "-4256"; ### ERV316A3_4q21.1j ### chr4 rmsk gene 77479330 77482751 . + . gene_id "ERV316A3_4q21.1j"; transcript_id "ERV316A3_4q21.1j"; locus "ERV316A3_4q21.1j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0751"; model_cov "2396"; model_pct "45.8"; chr4 rmsk exon 77479330 77479858 3453 + . gene_id "ERV316A3_4q21.1j"; transcript_id "ERV316A3_4q21.1j"; locus "ERV316A3_4q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0751"; repClass "LTR"; repEnd "650"; repFamily "ERVL"; repLeft "-4576"; repStart "103"; chr4 rmsk exon 77480745 77481722 3453 + . gene_id "ERV316A3_4q21.1j"; transcript_id "ERV316A3_4q21.1j"; locus "ERV316A3_4q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0751"; repClass "LTR"; repEnd "1646"; repFamily "ERVL"; repLeft "-3580"; repStart "651"; chr4 rmsk exon 77481721 77482570 2653 + . gene_id "ERV316A3_4q21.1j"; transcript_id "ERV316A3_4q21.1j"; locus "ERV316A3_4q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0751"; repClass "LTR"; repEnd "4698"; repFamily "ERVL"; repLeft "-528"; repStart "3844"; chr4 rmsk exon 77482582 77482751 681 + . gene_id "ERV316A3_4q21.1j"; transcript_id "ERV316A3_4q21.1j"; locus "ERV316A3_4q21.1j"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0751"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "304"; ### ERV316A3_4q21.1k ### chr4 rmsk gene 77490147 77491130 . - . gene_id "ERV316A3_4q21.1k"; transcript_id "ERV316A3_4q21.1k"; locus "ERV316A3_4q21.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0752"; model_cov "650"; model_pct "12.4"; chr4 rmsk exon 77490147 77490479 731 - . gene_id "ERV316A3_4q21.1k"; transcript_id "ERV316A3_4q21.1k"; locus "ERV316A3_4q21.1k"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0752"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "148"; repStart "0"; chr4 rmsk exon 77490524 77491130 1299 - . gene_id "ERV316A3_4q21.1k"; transcript_id "ERV316A3_4q21.1k"; locus "ERV316A3_4q21.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0752"; repClass "LTR"; repEnd "2937"; repFamily "ERVL"; repLeft "2287"; repStart "-2289"; ### ERV316A3_4q21.1l ### chr4 rmsk gene 77491739 77492568 . + . gene_id "ERV316A3_4q21.1l"; transcript_id "ERV316A3_4q21.1l"; locus "ERV316A3_4q21.1l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0753"; model_cov "854"; model_pct "16.3"; chr4 rmsk exon 77491739 77492568 1276 + . gene_id "ERV316A3_4q21.1l"; transcript_id "ERV316A3_4q21.1l"; locus "ERV316A3_4q21.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0753"; repClass "LTR"; repEnd "1395"; repFamily "ERVL"; repLeft "-3831"; repStart "541"; ### ERV316A3_4q21.1m ### chr4 rmsk gene 77557268 77559538 . - . gene_id "ERV316A3_4q21.1m"; transcript_id "ERV316A3_4q21.1m"; locus "ERV316A3_4q21.1m"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0754"; model_cov "1425"; model_pct "27.3"; chr4 rmsk exon 77557268 77558362 1815 - . gene_id "ERV316A3_4q21.1m"; transcript_id "ERV316A3_4q21.1m"; locus "ERV316A3_4q21.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0754"; repClass "LTR"; repEnd "1778"; repFamily "ERVL"; repLeft "631"; repStart "-3448"; chr4 rmsk exon 77558652 77558933 1273 - . gene_id "ERV316A3_4q21.1m"; transcript_id "ERV316A3_4q21.1m"; locus "ERV316A3_4q21.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0754"; repClass "LTR"; repEnd "860"; repFamily "ERVL"; repLeft "582"; repStart "-4366"; chr4 rmsk exon 77559150 77559538 1171 - . gene_id "ERV316A3_4q21.1m"; transcript_id "ERV316A3_4q21.1m"; locus "ERV316A3_4q21.1m"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0754"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "11"; repStart "0"; ### MER41_4q21.1b ### chr4 rmsk gene 77573676 77574676 . + . gene_id "MER41_4q21.1b"; transcript_id "MER41_4q21.1b"; locus "MER41_4q21.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0138"; model_cov "1611"; model_pct "27.1"; chr4 rmsk exon 77573676 77574676 4190 + . gene_id "MER41_4q21.1b"; transcript_id "MER41_4q21.1b"; locus "MER41_4q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0138"; repClass "LTR"; repEnd "1603"; repFamily "ERV1"; repLeft "-4343"; repStart "-8"; ### MER61_4q21.1b ### chr4 rmsk gene 77574705 77578797 . + . gene_id "MER61_4q21.1b"; transcript_id "MER61_4q21.1b"; locus "MER61_4q21.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0121"; model_cov "4070"; model_pct "78.0"; chr4 rmsk exon 77574705 77574954 1766 + . gene_id "MER61_4q21.1b"; transcript_id "MER61_4q21.1b"; locus "MER61_4q21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0121"; repClass "LTR"; repEnd "1641"; repFamily "ERV1"; repLeft "-3576"; repStart "1392"; chr4 rmsk exon 77574944 77575295 9731 + . gene_id "MER61_4q21.1b"; transcript_id "MER61_4q21.1b"; locus "MER61_4q21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0121"; repClass "LTR"; repEnd "3298"; repFamily "ERV1"; repLeft "-1919"; repStart "3153"; chr4 rmsk exon 77575659 77578457 13252 + . gene_id "MER61_4q21.1b"; transcript_id "MER61_4q21.1b"; locus "MER61_4q21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0121"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "-289"; repStart "1252"; chr4 rmsk exon 77578458 77578797 1850 + . gene_id "MER61_4q21.1b"; transcript_id "MER61_4q21.1b"; locus "MER61_4q21.1b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0121"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_4q21.1 ### chr4 rmsk gene 77630548 77637162 . - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0043"; model_cov "5975"; model_pct "98.8"; chr4 rmsk exon 77630548 77630870 2065 - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0043"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr4 rmsk exon 77630872 77632868 14000 - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0043"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4066"; repStart "0"; chr4 rmsk exon 77632870 77633158 1997 - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0043"; repClass "LTR"; repEnd "4127"; repFamily "ERVL"; repLeft "3840"; repStart "-1920"; chr4 rmsk exon 77633166 77636836 22752 - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0043"; repClass "LTR"; repEnd "3709"; repFamily "ERVL"; repLeft "2"; repStart "-2338"; chr4 rmsk exon 77636846 77637162 2211 - . gene_id "HERVL18_4q21.1"; transcript_id "HERVL18_4q21.1"; locus "HERVL18_4q21.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0043"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "1"; repStart "-14"; ### ERVLE_4q21.1e ### chr4 rmsk gene 77705578 77706521 . + . gene_id "ERVLE_4q21.1e"; transcript_id "ERVLE_4q21.1e"; locus "ERVLE_4q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1011"; model_cov "845"; model_pct "14.9"; chr4 rmsk exon 77705578 77705844 362 + . gene_id "ERVLE_4q21.1e"; transcript_id "ERVLE_4q21.1e"; locus "ERVLE_4q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1011"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-5316"; repStart "85"; chr4 rmsk exon 77705955 77706521 651 + . gene_id "ERVLE_4q21.1e"; transcript_id "ERVLE_4q21.1e"; locus "ERVLE_4q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1011"; repClass "LTR"; repEnd "1084"; repFamily "ERVL"; repLeft "-4583"; repStart "505"; ### ERV316A3_4q21.21a ### chr4 rmsk gene 78031565 78036384 . + . gene_id "ERV316A3_4q21.21a"; transcript_id "ERV316A3_4q21.21a"; locus "ERV316A3_4q21.21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0757"; model_cov "3752"; model_pct "71.8"; chr4 rmsk exon 78031565 78031702 379 + . gene_id "ERV316A3_4q21.21a"; transcript_id "ERV316A3_4q21.21a"; locus "ERV316A3_4q21.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0757"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "-4799"; repStart "281"; chr4 rmsk exon 78031772 78032987 2855 + . gene_id "ERV316A3_4q21.21a"; transcript_id "ERV316A3_4q21.21a"; locus "ERV316A3_4q21.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0757"; repClass "LTR"; repEnd "1778"; repFamily "ERVL"; repLeft "-3448"; repStart "540"; chr4 rmsk exon 78033928 78036165 3322 + . gene_id "ERV316A3_4q21.21a"; transcript_id "ERV316A3_4q21.21a"; locus "ERV316A3_4q21.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0757"; repClass "LTR"; repEnd "4570"; repFamily "ERVL"; repLeft "-656"; repStart "2202"; chr4 rmsk exon 78036173 78036384 505 + . gene_id "ERV316A3_4q21.21a"; transcript_id "ERV316A3_4q21.21a"; locus "ERV316A3_4q21.21a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0757"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "-22"; repStart "207"; ### ERVLE_4q21.21a ### chr4 rmsk gene 78041638 78042241 . - . gene_id "ERVLE_4q21.21a"; transcript_id "ERVLE_4q21.21a"; locus "ERVLE_4q21.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1013"; model_cov "629"; model_pct "11.1"; chr4 rmsk exon 78041638 78042241 2342 - . gene_id "ERVLE_4q21.21a"; transcript_id "ERVLE_4q21.21a"; locus "ERVLE_4q21.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1013"; repClass "LTR"; repEnd "1885"; repFamily "ERVL"; repLeft "1256"; repStart "-3782"; ### HERVK11_4q21.21a ### chr4 rmsk gene 78328665 78331122 . + . gene_id "HERVK11_4q21.21a"; transcript_id "HERVK11_4q21.21a"; locus "HERVK11_4q21.21a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0028"; model_cov "1414"; model_pct "17.8"; chr4 rmsk exon 78328665 78329074 3361 + . gene_id "HERVK11_4q21.21a"; transcript_id "HERVK11_4q21.21a"; locus "HERVK11_4q21.21a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0028"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "6350"; chr4 rmsk exon 78329059 78330055 8323 + . gene_id "HERVK11_4q21.21a"; transcript_id "HERVK11_4q21.21a"; locus "HERVK11_4q21.21a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0028"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6954"; chr4 rmsk exon 78330056 78331122 9304 + . gene_id "HERVK11_4q21.21a"; transcript_id "HERVK11_4q21.21a"; locus "HERVK11_4q21.21a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0028"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER41_4q21.21 ### chr4 rmsk gene 78694846 78703208 . - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; category "internal"; intModel "MER41-int"; locid "MER41-int_0140"; model_cov "5937"; model_pct "99.8"; chr4 rmsk exon 78694846 78695028 5512 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "5841"; repFamily "ERV1"; repLeft "5653"; repStart "-105"; chr4 rmsk exon 78695328 78696788 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "5652"; repFamily "ERV1"; repLeft "3941"; repStart "-294"; chr4 rmsk exon 78697084 78697458 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "4325"; repFamily "ERV1"; repLeft "3918"; repStart "-1621"; chr4 rmsk exon 78697793 78698415 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "3381"; repStart "-2029"; chr4 rmsk exon 78698715 78698808 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "3380"; repFamily "ERV1"; repLeft "3283"; repStart "-2566"; chr4 rmsk exon 78699122 78699344 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "3031"; repStart "-2666"; chr4 rmsk exon 78699644 78700524 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "3030"; repFamily "ERV1"; repLeft "2135"; repStart "-2916"; chr4 rmsk exon 78700822 78702021 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "2134"; repFamily "ERV1"; repLeft "943"; repStart "-3812"; chr4 rmsk exon 78702316 78702581 12032 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "942"; repFamily "ERV1"; repLeft "664"; repStart "-5004"; chr4 rmsk exon 78702919 78703208 1112 - . gene_id "MER41_4q21.21"; transcript_id "MER41_4q21.21"; locus "MER41_4q21.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0140"; repClass "LTR"; repEnd "69"; repFamily "ERV1"; repLeft "-316"; repStart "-5877"; ### HERVH_4q21.21a ### chr4 rmsk gene 78713842 78719721 . - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0375"; model_cov "5055"; model_pct "65.5"; chr4 rmsk exon 78713842 78714293 3625 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 78714299 78714673 2543 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "7708"; repFamily "ERV1"; repLeft "7322"; repStart "-5"; chr4 rmsk exon 78714672 78714887 1424 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 78714889 78715549 4361 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr4 rmsk exon 78715553 78716054 3416 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 78716045 78719269 20716 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr4 rmsk exon 78719272 78719721 3682 - . gene_id "HERVH_4q21.21a"; transcript_id "HERVH_4q21.21a"; locus "HERVH_4q21.21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0375"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q21.21b ### chr4 rmsk gene 79117801 79118348 . - . gene_id "ERVLE_4q21.21b"; transcript_id "ERVLE_4q21.21b"; locus "ERVLE_4q21.21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1014"; model_cov "641"; model_pct "11.3"; chr4 rmsk exon 79117801 79117873 267 - . gene_id "ERVLE_4q21.21b"; transcript_id "ERVLE_4q21.21b"; locus "ERVLE_4q21.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1014"; repClass "LTR"; repEnd "5010"; repFamily "ERVL"; repLeft "4933"; repStart "-657"; chr4 rmsk exon 79117870 79118348 913 - . gene_id "ERVLE_4q21.21b"; transcript_id "ERVLE_4q21.21b"; locus "ERVLE_4q21.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1014"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "1065"; repStart "-4038"; ### ERVLE_4q21.21c ### chr4 rmsk gene 79239261 79241863 . + . gene_id "ERVLE_4q21.21c"; transcript_id "ERVLE_4q21.21c"; locus "ERVLE_4q21.21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1015"; model_cov "1941"; model_pct "34.3"; chr4 rmsk exon 79239261 79239418 5113 + . gene_id "ERVLE_4q21.21c"; transcript_id "ERVLE_4q21.21c"; locus "ERVLE_4q21.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1015"; repClass "LTR"; repEnd "3864"; repFamily "ERVL"; repLeft "-1803"; repStart "3718"; chr4 rmsk exon 79239712 79241049 5113 + . gene_id "ERVLE_4q21.21c"; transcript_id "ERVLE_4q21.21c"; locus "ERVLE_4q21.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1015"; repClass "LTR"; repEnd "5243"; repFamily "ERVL"; repLeft "-424"; repStart "3865"; chr4 rmsk exon 79241478 79241863 5113 + . gene_id "ERVLE_4q21.21c"; transcript_id "ERVLE_4q21.21c"; locus "ERVLE_4q21.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1015"; repClass "LTR"; repEnd "5661"; repFamily "ERVL"; repLeft "-6"; repStart "5244"; ### HERVIP10F_4q21.21 ### chr4 rmsk gene 79276374 79277939 . + . gene_id "HERVIP10F_4q21.21"; transcript_id "HERVIP10F_4q21.21"; locus "HERVIP10F_4q21.21"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0037"; model_cov "1113"; model_pct "14.4"; chr4 rmsk exon 79276374 79277480 8794 + . gene_id "HERVIP10F_4q21.21"; transcript_id "HERVIP10F_4q21.21"; locus "HERVIP10F_4q21.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0037"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "-4"; repStart "6620"; chr4 rmsk exon 79277484 79277939 3158 + . gene_id "HERVIP10F_4q21.21"; transcript_id "HERVIP10F_4q21.21"; locus "HERVIP10F_4q21.21"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0037"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-50"; repStart "1"; ### HERVH_4q21.21b ### chr4 rmsk gene 79553970 79559709 . - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0376"; model_cov "4912"; model_pct "63.7"; chr4 rmsk exon 79553970 79554416 3555 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 79554417 79554796 2543 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 79554795 79555005 1324 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 79555007 79555665 4134 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr4 rmsk exon 79555669 79556171 3242 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 79556162 79556311 967 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 79556298 79559257 19939 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr4 rmsk exon 79559260 79559709 3444 - . gene_id "HERVH_4q21.21b"; transcript_id "HERVH_4q21.21b"; locus "HERVH_4q21.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0376"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HERVK11_4q21.21b ### chr4 rmsk gene 79824403 79827343 . - . gene_id "HERVK11_4q21.21b"; transcript_id "HERVK11_4q21.21b"; locus "HERVK11_4q21.21b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0029"; model_cov "2282"; model_pct "28.7"; chr4 rmsk exon 79824403 79825471 8706 - . gene_id "HERVK11_4q21.21b"; transcript_id "HERVK11_4q21.21b"; locus "HERVK11_4q21.21b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0029"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 79825472 79827343 7921 - . gene_id "HERVK11_4q21.21b"; transcript_id "HERVK11_4q21.21b"; locus "HERVK11_4q21.21b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0029"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "5671"; repStart "0"; ### ERV316A3_4q21.21b ### chr4 rmsk gene 79848602 79850304 . + . gene_id "ERV316A3_4q21.21b"; transcript_id "ERV316A3_4q21.21b"; locus "ERV316A3_4q21.21b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0759"; model_cov "719"; model_pct "13.8"; chr4 rmsk exon 79848602 79848698 258 + . gene_id "ERV316A3_4q21.21b"; transcript_id "ERV316A3_4q21.21b"; locus "ERV316A3_4q21.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0759"; repClass "LTR"; repEnd "3742"; repFamily "ERVL"; repLeft "-1484"; repStart "3649"; chr4 rmsk exon 79848837 79848938 321 + . gene_id "ERV316A3_4q21.21b"; transcript_id "ERV316A3_4q21.21b"; locus "ERV316A3_4q21.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0759"; repClass "LTR"; repEnd "4393"; repFamily "ERVL"; repLeft "-833"; repStart "4292"; chr4 rmsk exon 79849054 79849558 841 + . gene_id "ERV316A3_4q21.21b"; transcript_id "ERV316A3_4q21.21b"; locus "ERV316A3_4q21.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0759"; repClass "LTR"; repEnd "4997"; repFamily "ERVL"; repLeft "-229"; repStart "4472"; chr4 rmsk exon 79849796 79850304 1167 + . gene_id "ERV316A3_4q21.21b"; transcript_id "ERV316A3_4q21.21b"; locus "ERV316A3_4q21.21b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0759"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-15"; repStart "8"; ### HERVL_4q21.21 ### chr4 rmsk gene 80174515 80180735 . - . gene_id "HERVL_4q21.21"; transcript_id "HERVL_4q21.21"; locus "HERVL_4q21.21"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0384"; model_cov "5429"; model_pct "96.0"; chr4 rmsk exon 80174515 80174935 2990 - . gene_id "HERVL_4q21.21"; transcript_id "HERVL_4q21.21"; locus "HERVL_4q21.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0384"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr4 rmsk exon 80174938 80180341 43317 - . gene_id "HERVL_4q21.21"; transcript_id "HERVL_4q21.21"; locus "HERVL_4q21.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0384"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "223"; repStart "-2"; chr4 rmsk exon 80180344 80180735 2891 - . gene_id "HERVL_4q21.21"; transcript_id "HERVL_4q21.21"; locus "HERVL_4q21.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0384"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; ### ERV316A3_4q21.21c ### chr4 rmsk gene 80368903 80375923 . - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0760"; model_cov "3071"; model_pct "58.8"; chr4 rmsk exon 80368903 80369244 936 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "15"; repStart "-15"; chr4 rmsk exon 80369276 80369764 1381 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4641"; repStart "-50"; chr4 rmsk exon 80369795 80369943 856 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "4284"; repStart "-788"; chr4 rmsk exon 80372372 80372468 856 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "4283"; repFamily "ERVL"; repLeft "4199"; repStart "-943"; chr4 rmsk exon 80372608 80373042 1596 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "2241"; repStart "-2544"; chr4 rmsk exon 80373178 80374787 3729 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "1926"; repFamily "ERVL"; repLeft "338"; repStart "-3300"; chr4 rmsk exon 80375242 80375540 537 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "308"; repFamily "ERVL"; repLeft "39"; repStart "-4918"; chr4 rmsk exon 80375587 80375923 693 - . gene_id "ERV316A3_4q21.21c"; transcript_id "ERV316A3_4q21.21c"; locus "ERV316A3_4q21.21c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0760"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "51"; repStart "-31"; ### ERVLE_4q21.21d ### chr4 rmsk gene 80793516 80799041 . - . gene_id "ERVLE_4q21.21d"; transcript_id "ERVLE_4q21.21d"; locus "ERVLE_4q21.21d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1018"; model_cov "5567"; model_pct "98.2"; chr4 rmsk exon 80793516 80793660 735 - . gene_id "ERVLE_4q21.21d"; transcript_id "ERVLE_4q21.21d"; locus "ERVLE_4q21.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1018"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5520"; repStart "-1"; chr4 rmsk exon 80793684 80799041 25740 - . gene_id "ERVLE_4q21.21d"; transcript_id "ERVLE_4q21.21d"; locus "ERVLE_4q21.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1018"; repClass "LTR"; repEnd "5426"; repFamily "ERVL"; repLeft "5"; repStart "-241"; ### ERVLE_4q21.22 ### chr4 rmsk gene 82384061 82385560 . + . gene_id "ERVLE_4q21.22"; transcript_id "ERVLE_4q21.22"; locus "ERVLE_4q21.22"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1020"; model_cov "773"; model_pct "13.6"; chr4 rmsk exon 82384061 82384406 1670 + . gene_id "ERVLE_4q21.22"; transcript_id "ERVLE_4q21.22"; locus "ERVLE_4q21.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1020"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-5267"; repStart "2"; chr4 rmsk exon 82384711 82384933 1670 + . gene_id "ERVLE_4q21.22"; transcript_id "ERVLE_4q21.22"; locus "ERVLE_4q21.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1020"; repClass "LTR"; repEnd "634"; repFamily "ERVL"; repLeft "-5033"; repStart "401"; chr4 rmsk exon 82385413 82385560 682 + . gene_id "ERVLE_4q21.22"; transcript_id "ERVLE_4q21.22"; locus "ERVLE_4q21.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1020"; repClass "LTR"; repEnd "805"; repFamily "ERVL"; repLeft "-4862"; repStart "663"; ### HERVW_4q21.22 ### chr4 rmsk gene 82473317 82480053 . + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0098"; model_cov "4969"; model_pct "57.6"; chr4 rmsk exon 82473317 82474030 4979 + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0098"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 82474033 82474365 28228 + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0098"; repClass "LTR"; repEnd "343"; repFamily "ERV1"; repLeft "-8283"; repStart "3"; chr4 rmsk exon 82474680 82478317 28228 + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0098"; repClass "LTR"; repEnd "3946"; repFamily "ERV1"; repLeft "-4680"; repStart "344"; chr4 rmsk exon 82478311 82479337 8421 + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0098"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7599"; chr4 rmsk exon 82479338 82480053 5025 + . gene_id "HERVW_4q21.22"; transcript_id "HERVW_4q21.22"; locus "HERVW_4q21.22"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0098"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL40_4q21.22 ### chr4 rmsk gene 82989313 82991013 . - . gene_id "HERVL40_4q21.22"; transcript_id "HERVL40_4q21.22"; locus "HERVL40_4q21.22"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0095"; model_cov "935"; model_pct "16.9"; chr4 rmsk exon 82989313 82989918 1335 - . gene_id "HERVL40_4q21.22"; transcript_id "HERVL40_4q21.22"; locus "HERVL40_4q21.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0095"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "942"; repStart "-3919"; chr4 rmsk exon 82989946 82990202 389 - . gene_id "HERVL40_4q21.22"; transcript_id "HERVL40_4q21.22"; locus "HERVL40_4q21.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0095"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "1"; repStart "-5263"; chr4 rmsk exon 82990204 82990486 2134 - . gene_id "HERVL40_4q21.22"; transcript_id "HERVL40_4q21.22"; locus "HERVL40_4q21.22"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0095"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "253"; repStart "0"; chr4 rmsk exon 82990783 82991013 2134 - . gene_id "HERVL40_4q21.22"; transcript_id "HERVL40_4q21.22"; locus "HERVL40_4q21.22"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0095"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "15"; repStart "-267"; ### HUERSP1_4q21.22 ### chr4 rmsk gene 83096768 83099235 . + . gene_id "HUERSP1_4q21.22"; transcript_id "HUERSP1_4q21.22"; locus "HUERSP1_4q21.22"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0061"; model_cov "2159"; model_pct "34.5"; chr4 rmsk exon 83096768 83096865 730 + . gene_id "HUERSP1_4q21.22"; transcript_id "HUERSP1_4q21.22"; locus "HUERSP1_4q21.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0061"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "-4676"; repStart "1490"; chr4 rmsk exon 83096865 83097230 15631 + . gene_id "HUERSP1_4q21.22"; transcript_id "HUERSP1_4q21.22"; locus "HUERSP1_4q21.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0061"; repClass "LTR"; repEnd "2958"; repFamily "ERV1"; repLeft "-3305"; repStart "2594"; chr4 rmsk exon 83097270 83097860 15631 + . gene_id "HUERSP1_4q21.22"; transcript_id "HUERSP1_4q21.22"; locus "HUERSP1_4q21.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0061"; repClass "LTR"; repEnd "3554"; repFamily "ERV1"; repLeft "-2709"; repStart "2959"; chr4 rmsk exon 83098157 83099235 15631 + . gene_id "HUERSP1_4q21.22"; transcript_id "HUERSP1_4q21.22"; locus "HUERSP1_4q21.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0061"; repClass "LTR"; repEnd "4658"; repFamily "ERV1"; repLeft "-1605"; repStart "3555"; ### MER34B_4q21.22a ### chr4 rmsk gene 83183561 83184563 . - . gene_id "MER34B_4q21.22a"; transcript_id "MER34B_4q21.22a"; locus "MER34B_4q21.22a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0086"; model_cov "1760"; model_pct "32.9"; chr4 rmsk exon 83183561 83184563 2465 - . gene_id "MER34B_4q21.22a"; transcript_id "MER34B_4q21.22a"; locus "MER34B_4q21.22a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0086"; repClass "LTR"; repEnd "1563"; repFamily "ERV1"; repLeft "-197"; repStart "-3793"; ### MER34B_4q21.22b ### chr4 rmsk gene 83187629 83190189 . - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0088"; model_cov "2307"; model_pct "43.1"; chr4 rmsk exon 83187629 83188202 1219 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "2274"; repFamily "ERV1"; repLeft "1733"; repStart "-3082"; chr4 rmsk exon 83188210 83188590 905 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "1443"; repFamily "ERV1"; repLeft "1037"; repStart "-3913"; chr4 rmsk exon 83188559 83188658 408 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "1294"; repFamily "ERV1"; repLeft "1192"; repStart "-4062"; chr4 rmsk exon 83189022 83189397 1612 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "933"; repFamily "ERV1"; repLeft "624"; repStart "-4423"; chr4 rmsk exon 83189441 83189659 1612 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "401"; repStart "-4733"; chr4 rmsk exon 83189676 83190189 1150 - . gene_id "MER34B_4q21.22b"; transcript_id "MER34B_4q21.22b"; locus "MER34B_4q21.22b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0088"; repClass "LTR"; repEnd "-2083"; repFamily "ERV1"; repLeft "-2810"; repStart "-7439"; ### HERVFH19_4q21.23 ### chr4 rmsk gene 83202784 83208165 . + . gene_id "HERVFH19_4q21.23"; transcript_id "HERVFH19_4q21.23"; locus "HERVFH19_4q21.23"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0011"; model_cov "4367"; model_pct "56.6"; chr4 rmsk exon 83202784 83203018 1834 + . gene_id "HERVFH19_4q21.23"; transcript_id "HERVFH19_4q21.23"; locus "HERVFH19_4q21.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0011"; repClass "LTR"; repEnd "3520"; repFamily "ERV1"; repLeft "-4199"; repStart "3282"; chr4 rmsk exon 83203278 83206154 32139 + . gene_id "HERVFH19_4q21.23"; transcript_id "HERVFH19_4q21.23"; locus "HERVFH19_4q21.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0011"; repClass "LTR"; repEnd "6471"; repFamily "ERV1"; repLeft "-1248"; repStart "3582"; chr4 rmsk exon 83206457 83207704 32139 + . gene_id "HERVFH19_4q21.23"; transcript_id "HERVFH19_4q21.23"; locus "HERVFH19_4q21.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0011"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-7"; repStart "6472"; chr4 rmsk exon 83207712 83208165 2345 + . gene_id "HERVFH19_4q21.23"; transcript_id "HERVFH19_4q21.23"; locus "HERVFH19_4q21.23"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0011"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q21.23a ### chr4 rmsk gene 83250518 83251814 . - . gene_id "ERVLE_4q21.23a"; transcript_id "ERVLE_4q21.23a"; locus "ERVLE_4q21.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1021"; model_cov "1323"; model_pct "23.3"; chr4 rmsk exon 83250518 83250612 306 - . gene_id "ERVLE_4q21.23a"; transcript_id "ERVLE_4q21.23a"; locus "ERVLE_4q21.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1021"; repClass "LTR"; repEnd "1737"; repFamily "ERVL"; repLeft "1642"; repStart "-3930"; chr4 rmsk exon 83250612 83251380 1164 - . gene_id "ERVLE_4q21.23a"; transcript_id "ERVLE_4q21.23a"; locus "ERVLE_4q21.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1021"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "736"; repStart "-4086"; chr4 rmsk exon 83251428 83251814 544 - . gene_id "ERVLE_4q21.23a"; transcript_id "ERVLE_4q21.23a"; locus "ERVLE_4q21.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1021"; repClass "LTR"; repEnd "490"; repFamily "ERVL"; repLeft "107"; repStart "-5177"; ### HERVH48_4q21.23 ### chr4 rmsk gene 83504968 83510531 . - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0019"; model_cov "5188"; model_pct "78.0"; chr4 rmsk exon 83504968 83505283 2237 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "1"; repStart "-61"; chr4 rmsk exon 83505284 83505466 1376 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6472"; repStart "0"; chr4 rmsk exon 83505454 83506464 7583 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "5667"; repFamily "ERV1"; repLeft "4670"; repStart "-987"; chr4 rmsk exon 83506441 83509926 23932 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "4122"; repFamily "ERV1"; repLeft "586"; repStart "-2532"; chr4 rmsk exon 83509927 83510404 3253 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "-6180"; chr4 rmsk exon 83510405 83510531 915 - . gene_id "HERVH48_4q21.23"; transcript_id "HERVH48_4q21.23"; locus "HERVH48_4q21.23"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0019"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "281"; repStart "0"; ### ERVLB4_4q21.23a ### chr4 rmsk gene 83514280 83517627 . - . gene_id "ERVLB4_4q21.23a"; transcript_id "ERVLB4_4q21.23a"; locus "ERVLB4_4q21.23a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0467"; model_cov "1899"; model_pct "33.2"; chr4 rmsk exon 83514280 83514800 2654 - . gene_id "ERVLB4_4q21.23a"; transcript_id "ERVLB4_4q21.23a"; locus "ERVLB4_4q21.23a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0467"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr4 rmsk exon 83515116 83515451 12128 - . gene_id "ERVLB4_4q21.23a"; transcript_id "ERVLB4_4q21.23a"; locus "ERVLB4_4q21.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0467"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5382"; repStart "-1"; chr4 rmsk exon 83515761 83516719 12128 - . gene_id "ERVLB4_4q21.23a"; transcript_id "ERVLB4_4q21.23a"; locus "ERVLB4_4q21.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0467"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "4437"; repStart "-333"; chr4 rmsk exon 83517020 83517627 12128 - . gene_id "ERVLB4_4q21.23a"; transcript_id "ERVLB4_4q21.23a"; locus "ERVLB4_4q21.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0467"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "3812"; repStart "-1278"; ### ERVLB4_4q21.23b ### chr4 rmsk gene 83528777 83530913 . + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0468"; model_cov "1066"; model_pct "18.7"; chr4 rmsk exon 83528777 83528885 287 + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0468"; repClass "LTR"; repEnd "179"; repFamily "ERVL"; repLeft "-285"; repStart "80"; chr4 rmsk exon 83528902 83529050 348 + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0468"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-2"; repStart "321"; chr4 rmsk exon 83529557 83530328 1952 + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0468"; repClass "LTR"; repEnd "922"; repFamily "ERVL"; repLeft "-4792"; repStart "115"; chr4 rmsk exon 83530624 83530685 1322 + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0468"; repClass "LTR"; repEnd "974"; repFamily "ERVL"; repLeft "-4740"; repStart "923"; chr4 rmsk exon 83530705 83530913 1372 + . gene_id "ERVLB4_4q21.23b"; transcript_id "ERVLB4_4q21.23b"; locus "ERVLB4_4q21.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0468"; repClass "LTR"; repEnd "2193"; repFamily "ERVL"; repLeft "-3521"; repStart "1985"; ### ERVL_4q21.23 ### chr4 rmsk gene 83751140 83753083 . + . gene_id "ERVL_4q21.23"; transcript_id "ERVL_4q21.23"; locus "ERVL_4q21.23"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0106"; model_cov "1220"; model_pct "21.2"; chr4 rmsk exon 83751140 83752356 6341 + . gene_id "ERVL_4q21.23"; transcript_id "ERVL_4q21.23"; locus "ERVL_4q21.23"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0106"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4537"; chr4 rmsk exon 83752359 83752958 3666 + . gene_id "ERVL_4q21.23"; transcript_id "ERVL_4q21.23"; locus "ERVL_4q21.23"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0106"; repClass "LTR"; repEnd "677"; repFamily "ERVL"; repLeft "-40"; repStart "3"; chr4 rmsk exon 83753045 83753083 3666 + . gene_id "ERVL_4q21.23"; transcript_id "ERVL_4q21.23"; locus "ERVL_4q21.23"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0106"; repClass "LTR"; repEnd "716"; repFamily "ERVL"; repLeft "-1"; repStart "678"; ### HERVL18_4q21.23 ### chr4 rmsk gene 83962401 83965415 . - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0044"; model_cov "2222"; model_pct "36.7"; chr4 rmsk exon 83962401 83962750 2542 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 83962877 83962970 626 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr4 rmsk exon 83962973 83963214 1557 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "3339"; repStart "-2468"; chr4 rmsk exon 83963275 83963726 2677 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "3170"; repFamily "ERVL"; repLeft "2720"; repStart "-2877"; chr4 rmsk exon 83963726 83963996 1346 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr4 rmsk exon 83964006 83964637 2301 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1112"; repStart "-4237"; chr4 rmsk exon 83964638 83965052 1993 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "9"; repStart "-5631"; chr4 rmsk exon 83965067 83965415 2378 - . gene_id "HERVL18_4q21.23"; transcript_id "HERVL18_4q21.23"; locus "HERVL18_4q21.23"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0044"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### MER61_4q21.23a ### chr4 rmsk gene 83989433 83994396 . + . gene_id "MER61_4q21.23a"; transcript_id "MER61_4q21.23a"; locus "MER61_4q21.23a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0122"; model_cov "4383"; model_pct "84.0"; chr4 rmsk exon 83989433 83989764 1802 + . gene_id "MER61_4q21.23a"; transcript_id "MER61_4q21.23a"; locus "MER61_4q21.23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0122"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 83989765 83990313 2273 + . gene_id "MER61_4q21.23a"; transcript_id "MER61_4q21.23a"; locus "MER61_4q21.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0122"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "-4654"; repStart "1"; chr4 rmsk exon 83990299 83994056 24755 + . gene_id "MER61_4q21.23a"; transcript_id "MER61_4q21.23a"; locus "MER61_4q21.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0122"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1396"; chr4 rmsk exon 83994057 83994396 1883 + . gene_id "MER61_4q21.23a"; transcript_id "MER61_4q21.23a"; locus "MER61_4q21.23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0122"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q21.23b ### chr4 rmsk gene 84227635 84228771 . - . gene_id "ERVLE_4q21.23b"; transcript_id "ERVLE_4q21.23b"; locus "ERVLE_4q21.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1022"; model_cov "1281"; model_pct "22.6"; chr4 rmsk exon 84227635 84228771 979 - . gene_id "ERVLE_4q21.23b"; transcript_id "ERVLE_4q21.23b"; locus "ERVLE_4q21.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1022"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "280"; repStart "-4106"; ### ERVLE_4q21.23c ### chr4 rmsk gene 84945001 84946272 . + . gene_id "ERVLE_4q21.23c"; transcript_id "ERVLE_4q21.23c"; locus "ERVLE_4q21.23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1023"; model_cov "1052"; model_pct "18.6"; chr4 rmsk exon 84945001 84945283 484 + . gene_id "ERVLE_4q21.23c"; transcript_id "ERVLE_4q21.23c"; locus "ERVLE_4q21.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1023"; repClass "LTR"; repEnd "4148"; repFamily "ERVL"; repLeft "-1519"; repStart "3859"; chr4 rmsk exon 84945406 84945754 333 + . gene_id "ERVLE_4q21.23c"; transcript_id "ERVLE_4q21.23c"; locus "ERVLE_4q21.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1023"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4350"; chr4 rmsk exon 84945901 84946272 566 + . gene_id "ERVLE_4q21.23c"; transcript_id "ERVLE_4q21.23c"; locus "ERVLE_4q21.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1023"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "-391"; repStart "4885"; ### HML5_4q21.23 ### chr4 rmsk gene 85125447 85129232 . - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0033"; model_cov "2994"; model_pct "43.8"; chr4 rmsk exon 85125447 85125650 1015 - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0033"; repClass "LTR"; repEnd "236"; repFamily "ERVK"; repLeft "1"; repStart "-290"; chr4 rmsk exon 85125651 85127380 10644 - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0033"; repClass "LTR"; repEnd "5334"; repFamily "ERVK"; repLeft "3181"; repStart "-1503"; chr4 rmsk exon 85127382 85127528 890 - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0033"; repClass "LTR"; repEnd "2476"; repFamily "ERVK"; repLeft "2327"; repStart "-4361"; chr4 rmsk exon 85128014 85128702 4790 - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0033"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "3"; repStart "-6142"; chr4 rmsk exon 85128705 85129232 2641 - . gene_id "HML5_4q21.23"; transcript_id "HML5_4q21.23"; locus "HML5_4q21.23"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0033"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER61_4q21.23b ### chr4 rmsk gene 85318624 85320363 . - . gene_id "MER61_4q21.23b"; transcript_id "MER61_4q21.23b"; locus "MER61_4q21.23b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0123"; model_cov "2650"; model_pct "50.8"; chr4 rmsk exon 85318624 85320363 3576 - . gene_id "MER61_4q21.23b"; transcript_id "MER61_4q21.23b"; locus "MER61_4q21.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0123"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "2174"; repStart "-393"; ### HUERSP2_4q21.23 ### chr4 rmsk gene 85320461 85320802 . - . gene_id "HUERSP2_4q21.23"; transcript_id "HUERSP2_4q21.23"; locus "HUERSP2_4q21.23"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0043"; model_cov "341"; model_pct "11.0"; chr4 rmsk exon 85320461 85320802 976 - . gene_id "HUERSP2_4q21.23"; transcript_id "HUERSP2_4q21.23"; locus "HUERSP2_4q21.23"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0043"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "201"; repStart "-2546"; ### HERVW_4q21.23 ### chr4 rmsk gene 85352126 85355394 . - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0099"; model_cov "2385"; model_pct "27.6"; chr4 rmsk exon 85352126 85352453 2616 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "1"; repStart "-453"; chr4 rmsk exon 85352454 85352745 2416 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 85352736 85352774 287 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr4 rmsk exon 85352763 85353684 7632 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "6024"; repFamily "ERV1"; repLeft "5101"; repStart "-2602"; chr4 rmsk exon 85353826 85354214 3187 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "4571"; repStart "-3667"; chr4 rmsk exon 85354207 85354846 5309 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "3071"; repFamily "ERV1"; repLeft "2430"; repStart "-5555"; chr4 rmsk exon 85354832 85354894 495 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1952"; repStart "-6612"; chr4 rmsk exon 85354882 85354924 291 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "1"; repStart "-8583"; chr4 rmsk exon 85354925 85355394 2067 - . gene_id "HERVW_4q21.23"; transcript_id "HERVW_4q21.23"; locus "HERVW_4q21.23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0099"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "247"; repStart "0"; ### ERV316A3_4q21.3 ### chr4 rmsk gene 86432676 86433506 . + . gene_id "ERV316A3_4q21.3"; transcript_id "ERV316A3_4q21.3"; locus "ERV316A3_4q21.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0762"; model_cov "655"; model_pct "12.5"; chr4 rmsk exon 86432676 86432941 450 + . gene_id "ERV316A3_4q21.3"; transcript_id "ERV316A3_4q21.3"; locus "ERV316A3_4q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0762"; repClass "LTR"; repEnd "1192"; repFamily "ERVL"; repLeft "-4034"; repStart "775"; chr4 rmsk exon 86432933 86433173 582 + . gene_id "ERV316A3_4q21.3"; transcript_id "ERV316A3_4q21.3"; locus "ERV316A3_4q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0762"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "4983"; chr4 rmsk exon 86433230 86433506 713 + . gene_id "ERV316A3_4q21.3"; transcript_id "ERV316A3_4q21.3"; locus "ERV316A3_4q21.3"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0762"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-113"; repStart "91"; ### HML3_4q21.3 ### chr4 rmsk gene 86460524 86466555 . + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0062"; model_cov "4782"; model_pct "79.4"; chr4 rmsk exon 86460524 86461032 3920 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 86461033 86461130 560 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "99"; repFamily "ERVK"; repLeft "-5922"; repStart "1"; chr4 rmsk exon 86461499 86461986 3791 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "85"; chr4 rmsk exon 86461985 86464540 32025 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "4003"; repFamily "ERVK"; repLeft "-2018"; repStart "1436"; chr4 rmsk exon 86464836 86466471 32025 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "5626"; repFamily "ERVK"; repLeft "-395"; repStart "4004"; chr4 rmsk exon 86466479 86466555 560 + . gene_id "HML3_4q21.3"; transcript_id "HML3_4q21.3"; locus "HML3_4q21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0062"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "436"; ### HERVH_4q21.3 ### chr4 rmsk gene 86474771 86480520 . + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0377"; model_cov "5099"; model_pct "66.1"; chr4 rmsk exon 86474771 86475220 3159 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chr4 rmsk exon 86475230 86478003 14416 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 86477983 86478832 5411 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 86478837 86479452 2790 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4490"; chr4 rmsk exon 86479483 86479687 1298 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr4 rmsk exon 86479688 86480063 2154 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 86480064 86480520 3332 + . gene_id "HERVH_4q21.3"; transcript_id "HERVH_4q21.3"; locus "HERVH_4q21.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0377"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_4q21.3 ### chr4 rmsk gene 86916104 86921518 . + . gene_id "ERVLE_4q21.3"; transcript_id "ERVLE_4q21.3"; locus "ERVLE_4q21.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1025"; model_cov "1617"; model_pct "28.5"; chr4 rmsk exon 86916104 86916921 2916 + . gene_id "ERVLE_4q21.3"; transcript_id "ERVLE_4q21.3"; locus "ERVLE_4q21.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1025"; repClass "LTR"; repEnd "4563"; repFamily "ERVL"; repLeft "-1104"; repStart "3727"; chr4 rmsk exon 86918267 86918757 1806 + . gene_id "ERVLE_4q21.3"; transcript_id "ERVLE_4q21.3"; locus "ERVLE_4q21.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1025"; repClass "LTR"; repEnd "5052"; repFamily "ERVL"; repLeft "-615"; repStart "4559"; chr4 rmsk exon 86921238 86921518 759 + . gene_id "ERVLE_4q21.3"; transcript_id "ERVLE_4q21.3"; locus "ERVLE_4q21.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1025"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "-319"; repStart "5060"; ### HERVK11_4q22.1 ### chr4 rmsk gene 87293570 87295792 . - . gene_id "HERVK11_4q22.1"; transcript_id "HERVK11_4q22.1"; locus "HERVK11_4q22.1"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0030"; model_cov "1219"; model_pct "15.3"; chr4 rmsk exon 87293570 87294581 4181 - . gene_id "HERVK11_4q22.1"; transcript_id "HERVK11_4q22.1"; locus "HERVK11_4q22.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0030"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 87294582 87295792 9219 - . gene_id "HERVK11_4q22.1"; transcript_id "HERVK11_4q22.1"; locus "HERVK11_4q22.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0030"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6734"; repStart "0"; ### PABLA_4q22.1 ### chr4 rmsk gene 87361967 87365866 . + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0034"; model_cov "3719"; model_pct "74.2"; chr4 rmsk exon 87361967 87362242 4791 + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0034"; repClass "LTR"; repEnd "-657"; repFamily "ERV1"; repLeft "-5672"; repStart "-928"; chr4 rmsk exon 87362553 87363891 4791 + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0034"; repClass "LTR"; repEnd "811"; repFamily "ERV1"; repLeft "-4204"; repStart "-656"; chr4 rmsk exon 87363888 87364135 10195 + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0034"; repClass "LTR"; repEnd "946"; repFamily "ERV1"; repLeft "-4069"; repStart "696"; chr4 rmsk exon 87364176 87364890 10195 + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0034"; repClass "LTR"; repEnd "1658"; repFamily "ERV1"; repLeft "-3357"; repStart "947"; chr4 rmsk exon 87365183 87365866 10287 + . gene_id "PABLA_4q22.1"; transcript_id "PABLA_4q22.1"; locus "PABLA_4q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0034"; repClass "LTR"; repEnd "2378"; repFamily "ERV1"; repLeft "-2637"; repStart "1358"; ### MER41_4q22.1a ### chr4 rmsk gene 87366157 87369097 . + . gene_id "MER41_4q22.1a"; transcript_id "MER41_4q22.1a"; locus "MER41_4q22.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0141"; model_cov "3879"; model_pct "65.2"; chr4 rmsk exon 87366157 87368035 11901 + . gene_id "MER41_4q22.1a"; transcript_id "MER41_4q22.1a"; locus "MER41_4q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0141"; repClass "LTR"; repEnd "5758"; repFamily "ERV1"; repLeft "-188"; repStart "2064"; chr4 rmsk exon 87368331 87368540 11901 + . gene_id "MER41_4q22.1a"; transcript_id "MER41_4q22.1a"; locus "MER41_4q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0141"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5759"; chr4 rmsk exon 87368541 87369097 4359 + . gene_id "MER41_4q22.1a"; transcript_id "MER41_4q22.1a"; locus "MER41_4q22.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0141"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML1_4q22.1 ### chr4 rmsk gene 87402106 87408795 . - . gene_id "HML1_4q22.1"; transcript_id "HML1_4q22.1"; locus "HML1_4q22.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0024"; model_cov "6019"; model_pct "98.7"; chr4 rmsk exon 87402106 87402513 1971 - . gene_id "HML1_4q22.1"; transcript_id "HML1_4q22.1"; locus "HML1_4q22.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0024"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 87402517 87402635 836 - . gene_id "HML1_4q22.1"; transcript_id "HML1_4q22.1"; locus "HML1_4q22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0024"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr4 rmsk exon 87402711 87408386 42000 - . gene_id "HML1_4q22.1"; transcript_id "HML1_4q22.1"; locus "HML1_4q22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0024"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "1"; repStart "-199"; chr4 rmsk exon 87408387 87408795 2084 - . gene_id "HML1_4q22.1"; transcript_id "HML1_4q22.1"; locus "HML1_4q22.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0024"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_4q22.1a ### chr4 rmsk gene 87560828 87561948 . - . gene_id "ERV316A3_4q22.1a"; transcript_id "ERV316A3_4q22.1a"; locus "ERV316A3_4q22.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0763"; model_cov "544"; model_pct "10.4"; chr4 rmsk exon 87560828 87561191 1064 - . gene_id "ERV316A3_4q22.1a"; transcript_id "ERV316A3_4q22.1a"; locus "ERV316A3_4q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0763"; repClass "LTR"; repEnd "4050"; repFamily "ERVL"; repLeft "3673"; repStart "-1176"; chr4 rmsk exon 87561783 87561948 736 - . gene_id "ERV316A3_4q22.1a"; transcript_id "ERV316A3_4q22.1a"; locus "ERV316A3_4q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0763"; repClass "LTR"; repEnd "3677"; repFamily "ERVL"; repLeft "3510"; repStart "-1549"; ### ERVLE_4q22.1a ### chr4 rmsk gene 87693572 87694567 . - . gene_id "ERVLE_4q22.1a"; transcript_id "ERVLE_4q22.1a"; locus "ERVLE_4q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1026"; model_cov "993"; model_pct "17.5"; chr4 rmsk exon 87693572 87694043 1029 - . gene_id "ERVLE_4q22.1a"; transcript_id "ERVLE_4q22.1a"; locus "ERVLE_4q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1026"; repClass "LTR"; repEnd "1316"; repFamily "ERVL"; repLeft "831"; repStart "-4351"; chr4 rmsk exon 87694066 87694567 495 - . gene_id "ERVLE_4q22.1a"; transcript_id "ERVLE_4q22.1a"; locus "ERVLE_4q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1026"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "282"; repStart "-4877"; ### HERVH_4q22.1a ### chr4 rmsk gene 87921803 87925995 . + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0378"; model_cov "3731"; model_pct "48.4"; chr4 rmsk exon 87921803 87922252 3625 + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0378"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 87922255 87925282 19503 + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0378"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 87925262 87925411 856 + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0378"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 87925402 87925906 3186 + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0378"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 87925909 87925995 658 + . gene_id "HERVH_4q22.1a"; transcript_id "HERVH_4q22.1a"; locus "HERVH_4q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0378"; repClass "LTR"; repEnd "4574"; repFamily "ERV1"; repLeft "-3139"; repStart "4488"; ### ERVLE_4q22.1b ### chr4 rmsk gene 87926069 87926643 . + . gene_id "ERVLE_4q22.1b"; transcript_id "ERVLE_4q22.1b"; locus "ERVLE_4q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1027"; model_cov "600"; model_pct "10.6"; chr4 rmsk exon 87926069 87926643 928 + . gene_id "ERVLE_4q22.1b"; transcript_id "ERVLE_4q22.1b"; locus "ERVLE_4q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1027"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "-378"; repStart "4689"; ### HERVH_4q22.1b ### chr4 rmsk gene 87935922 87937547 . - . gene_id "HERVH_4q22.1b"; transcript_id "HERVH_4q22.1b"; locus "HERVH_4q22.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0379"; model_cov "1191"; model_pct "15.4"; chr4 rmsk exon 87935922 87936368 3601 - . gene_id "HERVH_4q22.1b"; transcript_id "HERVH_4q22.1b"; locus "HERVH_4q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0379"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 87936369 87936746 2420 - . gene_id "HERVH_4q22.1b"; transcript_id "HERVH_4q22.1b"; locus "HERVH_4q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0379"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 87936747 87936962 1330 - . gene_id "HERVH_4q22.1b"; transcript_id "HERVH_4q22.1b"; locus "HERVH_4q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0379"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 87936964 87937547 3610 - . gene_id "HERVH_4q22.1b"; transcript_id "HERVH_4q22.1b"; locus "HERVH_4q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0379"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4566"; repStart "-2564"; ### ERVLE_4q22.1c ### chr4 rmsk gene 87937638 87939311 . - . gene_id "ERVLE_4q22.1c"; transcript_id "ERVLE_4q22.1c"; locus "ERVLE_4q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1028"; model_cov "1736"; model_pct "30.6"; chr4 rmsk exon 87937638 87938561 1308 - . gene_id "ERVLE_4q22.1c"; transcript_id "ERVLE_4q22.1c"; locus "ERVLE_4q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1028"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "3168"; repStart "-1464"; chr4 rmsk exon 87938651 87939311 1585 - . gene_id "ERVLE_4q22.1c"; transcript_id "ERVLE_4q22.1c"; locus "ERVLE_4q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1028"; repClass "LTR"; repEnd "3043"; repFamily "ERVL"; repLeft "2342"; repStart "-2624"; ### MER41_4q22.1b ### chr4 rmsk gene 87959392 87960133 . + . gene_id "MER41_4q22.1b"; transcript_id "MER41_4q22.1b"; locus "MER41_4q22.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0142"; model_cov "608"; model_pct "10.2"; chr4 rmsk exon 87959392 87959543 916 + . gene_id "MER41_4q22.1b"; transcript_id "MER41_4q22.1b"; locus "MER41_4q22.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0142"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "397"; chr4 rmsk exon 87959544 87959619 292 + . gene_id "MER41_4q22.1b"; transcript_id "MER41_4q22.1b"; locus "MER41_4q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0142"; repClass "LTR"; repEnd "-1708"; repFamily "ERV1"; repLeft "-7654"; repStart "-1809"; chr4 rmsk exon 87959630 87960133 3181 + . gene_id "MER41_4q22.1b"; transcript_id "MER41_4q22.1b"; locus "MER41_4q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0142"; repClass "LTR"; repEnd "508"; repFamily "ERV1"; repLeft "-5438"; repStart "1"; ### HERVH_4q22.1c ### chr4 rmsk gene 88152327 88155548 . - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0380"; model_cov "2832"; model_pct "36.7"; chr4 rmsk exon 88152327 88152728 2646 - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0380"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 88152729 88153105 2518 - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0380"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 88153106 88153320 1376 - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0380"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 88153322 88155373 7750 - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0380"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4199"; repStart "-1290"; chr4 rmsk exon 88155418 88155548 557 - . gene_id "HERVH_4q22.1c"; transcript_id "HERVH_4q22.1c"; locus "HERVH_4q22.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0380"; repClass "LTR"; repEnd "233"; repFamily "ERV1"; repLeft "15"; repStart "-231"; ### ERVLE_4q22.1d ### chr4 rmsk gene 88216042 88217357 . + . gene_id "ERVLE_4q22.1d"; transcript_id "ERVLE_4q22.1d"; locus "ERVLE_4q22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1030"; model_cov "1048"; model_pct "18.5"; chr4 rmsk exon 88216042 88216749 2855 + . gene_id "ERVLE_4q22.1d"; transcript_id "ERVLE_4q22.1d"; locus "ERVLE_4q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1030"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "-1344"; repStart "3595"; chr4 rmsk exon 88217045 88217357 2855 + . gene_id "ERVLE_4q22.1d"; transcript_id "ERVLE_4q22.1d"; locus "ERVLE_4q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1030"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-1023"; repStart "4324"; ### HERVH_4q22.1d ### chr4 rmsk gene 88344162 88349212 . - . gene_id "HERVH_4q22.1d"; transcript_id "HERVH_4q22.1d"; locus "HERVH_4q22.1d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0382"; model_cov "4842"; model_pct "62.8"; chr4 rmsk exon 88344162 88348779 20753 - . gene_id "HERVH_4q22.1d"; transcript_id "HERVH_4q22.1d"; locus "HERVH_4q22.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0382"; repClass "LTR"; repEnd "4843"; repFamily "ERV1"; repLeft "1"; repStart "-2870"; chr4 rmsk exon 88348780 88349212 2741 - . gene_id "HERVH_4q22.1d"; transcript_id "HERVH_4q22.1d"; locus "HERVH_4q22.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0382"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_4q22.1 ### chr4 rmsk gene 88442739 88453401 . + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0036"; model_cov "6919"; model_pct "100.0"; chr4 rmsk exon 88442739 88442856 263 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "-259"; repStart "290"; chr4 rmsk exon 88442880 88443177 863 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "335"; chr4 rmsk exon 88443178 88443735 2607 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "-747"; repFamily "ERV1"; repLeft "-7286"; repStart "-1276"; chr4 rmsk exon 88444278 88446112 8837 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "2605"; repFamily "ERV1"; repLeft "-3934"; repStart "652"; chr4 rmsk exon 88446117 88446414 2534 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "4008"; repFamily "ERV1"; repLeft "-2531"; repStart "3707"; chr4 rmsk exon 88446711 88446825 2534 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "4118"; repFamily "ERV1"; repLeft "-2421"; repStart "4009"; chr4 rmsk exon 88447138 88447281 2534 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "4272"; repFamily "ERV1"; repLeft "-2267"; repStart "4119"; chr4 rmsk exon 88448340 88448626 11232 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "4550"; repFamily "ERV1"; repLeft "-1989"; repStart "4269"; chr4 rmsk exon 88448931 88449710 11232 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "5338"; repFamily "ERV1"; repLeft "-1201"; repStart "4551"; chr4 rmsk exon 88450017 88450866 11232 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "6186"; repFamily "ERV1"; repLeft "-353"; repStart "5339"; chr4 rmsk exon 88451253 88452962 1877 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "6326"; repFamily "ERV1"; repLeft "-213"; repStart "4367"; chr4 rmsk exon 88452963 88453031 300 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "69"; repFamily "ERV1"; repLeft "-565"; repStart "1"; chr4 rmsk exon 88453161 88453219 264 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "-260"; repStart "316"; chr4 rmsk exon 88453187 88453401 930 + . gene_id "HERV4_4q22.1"; transcript_id "HERV4_4q22.1"; locus "HERV4_4q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0036"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "-95"; repStart "139"; ### HERVL18_4q22.1 ### chr4 rmsk gene 89104504 89108711 . + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0045"; model_cov "2926"; model_pct "48.4"; chr4 rmsk exon 89104504 89104701 733 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "-146"; repStart "1"; chr4 rmsk exon 89104768 89104983 656 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "344"; repFamily "ERVL"; repLeft "-13"; repStart "-13"; chr4 rmsk exon 89105054 89105581 1749 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "693"; repFamily "ERVL"; repLeft "-5354"; repStart "96"; chr4 rmsk exon 89105582 89106033 2867 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1324"; chr4 rmsk exon 89106026 89107509 10233 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "3581"; repFamily "ERVL"; repLeft "-2466"; repStart "2113"; chr4 rmsk exon 89107510 89107693 1595 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "4604"; repFamily "ERVL"; repLeft "-1443"; repStart "4394"; chr4 rmsk exon 89108044 89108127 1595 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "4683"; repFamily "ERVL"; repLeft "-1364"; repStart "4605"; chr4 rmsk exon 89108107 89108194 595 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5960"; chr4 rmsk exon 89108196 89108397 767 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "-146"; repStart "1"; chr4 rmsk exon 89108384 89108553 421 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "-114"; repStart "94"; chr4 rmsk exon 89108607 89108711 462 + . gene_id "HERVL18_4q22.1"; transcript_id "HERVL18_4q22.1"; locus "HERVL18_4q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0045"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "254"; ### ERV316A3_4q22.1b ### chr4 rmsk gene 89606800 89607915 . - . gene_id "ERV316A3_4q22.1b"; transcript_id "ERV316A3_4q22.1b"; locus "ERV316A3_4q22.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0764"; model_cov "552"; model_pct "10.6"; chr4 rmsk exon 89606800 89607185 608 - . gene_id "ERV316A3_4q22.1b"; transcript_id "ERV316A3_4q22.1b"; locus "ERV316A3_4q22.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0764"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "3"; repStart "-9"; chr4 rmsk exon 89607356 89607915 1886 - . gene_id "ERV316A3_4q22.1b"; transcript_id "ERV316A3_4q22.1b"; locus "ERV316A3_4q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0764"; repClass "LTR"; repEnd "5109"; repFamily "ERVL"; repLeft "4557"; repStart "-117"; ### HERVH_4q22.1e ### chr4 rmsk gene 89964793 89970429 . - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0383"; model_cov "4914"; model_pct "63.7"; chr4 rmsk exon 89964793 89965194 2537 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 89965195 89965574 2289 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 89965573 89965788 1342 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 89965790 89966459 4323 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr4 rmsk exon 89966456 89966964 3359 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 89966988 89967131 881 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "3140"; repStart "-4427"; chr4 rmsk exon 89967126 89970076 20184 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 89970079 89970429 2027 - . gene_id "HERVH_4q22.1e"; transcript_id "HERVH_4q22.1e"; locus "HERVH_4q22.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0383"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4q22.1c ### chr4 rmsk gene 90083464 90085368 . - . gene_id "ERV316A3_4q22.1c"; transcript_id "ERV316A3_4q22.1c"; locus "ERV316A3_4q22.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0765"; model_cov "1511"; model_pct "28.9"; chr4 rmsk exon 90083464 90084976 2351 - . gene_id "ERV316A3_4q22.1c"; transcript_id "ERV316A3_4q22.1c"; locus "ERV316A3_4q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0765"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "1395"; repStart "-2320"; chr4 rmsk exon 90084977 90085368 1292 - . gene_id "ERV316A3_4q22.1c"; transcript_id "ERV316A3_4q22.1c"; locus "ERV316A3_4q22.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0765"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "11"; repStart "-29"; ### ERVLB4_4q22.1a ### chr4 rmsk gene 90115153 90117073 . + . gene_id "ERVLB4_4q22.1a"; transcript_id "ERVLB4_4q22.1a"; locus "ERVLB4_4q22.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0472"; model_cov "1517"; model_pct "26.5"; chr4 rmsk exon 90115153 90116643 8410 + . gene_id "ERVLB4_4q22.1a"; transcript_id "ERVLB4_4q22.1a"; locus "ERVLB4_4q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0472"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "-573"; repStart "3624"; chr4 rmsk exon 90116644 90117073 1324 + . gene_id "ERVLB4_4q22.1a"; transcript_id "ERVLB4_4q22.1a"; locus "ERVLB4_4q22.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0472"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "-17"; repStart "-19"; ### HERVL40_4q22.1 ### chr4 rmsk gene 90373685 90377232 . + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0097"; model_cov "1675"; model_pct "30.3"; chr4 rmsk exon 90373685 90374125 1893 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "4"; chr4 rmsk exon 90374127 90374432 910 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-5226"; repStart "1"; chr4 rmsk exon 90374434 90374628 728 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "-3944"; repStart "1395"; chr4 rmsk exon 90374628 90375099 1679 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "4089"; repFamily "ERVL"; repLeft "-1441"; repStart "3616"; chr4 rmsk exon 90375090 90375491 1186 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "4637"; repFamily "ERVL"; repLeft "-893"; repStart "4202"; chr4 rmsk exon 90376520 90376776 1086 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "5515"; repFamily "ERVL"; repLeft "-15"; repStart "5242"; chr4 rmsk exon 90376793 90377232 1280 + . gene_id "HERVL40_4q22.1"; transcript_id "HERVL40_4q22.1"; locus "HERVL40_4q22.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0097"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### HERVEA_4q22.1 ### chr4 rmsk gene 91088998 91097079 . - . gene_id "HERVEA_4q22.1"; transcript_id "HERVEA_4q22.1"; locus "HERVEA_4q22.1"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0031"; model_cov "7637"; model_pct "97.3"; chr4 rmsk exon 91088998 91089484 2859 - . gene_id "HERVEA_4q22.1"; transcript_id "HERVEA_4q22.1"; locus "HERVEA_4q22.1"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0031"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr4 rmsk exon 91089490 91097079 52896 - . gene_id "HERVEA_4q22.1"; transcript_id "HERVEA_4q22.1"; locus "HERVEA_4q22.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0031"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "210"; repStart "0"; ### HML3_4q22.1a ### chr4 rmsk gene 91180683 91187026 . - . gene_id "HML3_4q22.1a"; transcript_id "HML3_4q22.1a"; locus "HML3_4q22.1a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0063"; model_cov "5474"; model_pct "90.9"; chr4 rmsk exon 91180683 91181194 4096 - . gene_id "HML3_4q22.1a"; transcript_id "HML3_4q22.1a"; locus "HML3_4q22.1a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0063"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 91181195 91185949 35831 - . gene_id "HML3_4q22.1a"; transcript_id "HML3_4q22.1a"; locus "HML3_4q22.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0063"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1126"; repStart "0"; chr4 rmsk exon 91185952 91186513 4385 - . gene_id "HML3_4q22.1a"; transcript_id "HML3_4q22.1a"; locus "HML3_4q22.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0063"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr4 rmsk exon 91186514 91187026 4326 - . gene_id "HML3_4q22.1a"; transcript_id "HML3_4q22.1a"; locus "HML3_4q22.1a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0063"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_4q22.1a ### chr4 rmsk gene 91353118 91359437 . - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0061"; model_cov "5472"; model_pct "79.4"; chr4 rmsk exon 91353118 91353596 3901 - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0061"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr4 rmsk exon 91353598 91357139 23943 - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0061"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr4 rmsk exon 91357139 91358129 6880 - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0061"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr4 rmsk exon 91358114 91358955 4131 - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0061"; repClass "LTR"; repEnd "927"; repFamily "ERV1"; repLeft "1"; repStart "-5969"; chr4 rmsk exon 91358956 91359437 4020 - . gene_id "HARLEQUIN_4q22.1a"; transcript_id "HARLEQUIN_4q22.1a"; locus "HARLEQUIN_4q22.1a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0061"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_4q22.1f ### chr4 rmsk gene 91623640 91629699 . + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0384"; model_cov "5068"; model_pct "65.7"; chr4 rmsk exon 91623640 91624089 3396 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 91624092 91624618 3746 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "-7174"; repStart "1"; chr4 rmsk exon 91624619 91627498 16523 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "246"; chr4 rmsk exon 91627478 91627626 887 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 91627626 91628115 3344 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr4 rmsk exon 91628118 91628777 4287 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 91628779 91628928 984 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1965"; repStart "5600"; chr4 rmsk exon 91628930 91629247 2097 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7384"; chr4 rmsk exon 91629248 91629699 3364 + . gene_id "HERVH_4q22.1f"; transcript_id "HERVH_4q22.1f"; locus "HERVH_4q22.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0384"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_4q22.1g ### chr4 rmsk gene 91654602 91660568 . - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0385"; model_cov "5048"; model_pct "65.4"; chr4 rmsk exon 91654602 91655053 3448 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 91655054 91655433 2373 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 91655432 91655647 1411 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 91655649 91656310 4293 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 91656312 91656802 3353 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3506"; repStart "-3719"; chr4 rmsk exon 91656808 91660115 19609 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr4 rmsk exon 91660118 91660568 3486 - . gene_id "HERVH_4q22.1g"; transcript_id "HERVH_4q22.1g"; locus "HERVH_4q22.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0385"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML3_4q22.1b ### chr4 rmsk gene 91696154 91702003 . - . gene_id "HML3_4q22.1b"; transcript_id "HML3_4q22.1b"; locus "HML3_4q22.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0064"; model_cov "4570"; model_pct "75.9"; chr4 rmsk exon 91696154 91696657 3524 - . gene_id "HML3_4q22.1b"; transcript_id "HML3_4q22.1b"; locus "HML3_4q22.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0064"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 91696658 91697858 9593 - . gene_id "HML3_4q22.1b"; transcript_id "HML3_4q22.1b"; locus "HML3_4q22.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0064"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4819"; repStart "0"; chr4 rmsk exon 91697861 91701150 26636 - . gene_id "HML3_4q22.1b"; transcript_id "HML3_4q22.1b"; locus "HML3_4q22.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0064"; repClass "LTR"; repEnd "3659"; repFamily "ERVK"; repLeft "291"; repStart "-2362"; chr4 rmsk exon 91701498 91702003 3856 - . gene_id "HML3_4q22.1b"; transcript_id "HML3_4q22.1b"; locus "HML3_4q22.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0064"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVL_4q22.1 ### chr4 rmsk gene 91846445 91847936 . + . gene_id "ERVL_4q22.1"; transcript_id "ERVL_4q22.1"; locus "ERVL_4q22.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0107"; model_cov "1561"; model_pct "27.1"; chr4 rmsk exon 91846445 91847275 834 + . gene_id "ERVL_4q22.1"; transcript_id "ERVL_4q22.1"; locus "ERVL_4q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0107"; repClass "LTR"; repEnd "1901"; repFamily "ERVL"; repLeft "-3856"; repStart "973"; chr4 rmsk exon 91847327 91847936 1232 + . gene_id "ERVL_4q22.1"; transcript_id "ERVL_4q22.1"; locus "ERVL_4q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0107"; repClass "LTR"; repEnd "2586"; repFamily "ERVL"; repLeft "-3171"; repStart "1953"; ### ERV316A3_4q22.1d ### chr4 rmsk gene 91848039 91849281 . + . gene_id "ERV316A3_4q22.1d"; transcript_id "ERV316A3_4q22.1d"; locus "ERV316A3_4q22.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0766"; model_cov "533"; model_pct "10.2"; chr4 rmsk exon 91848039 91848564 622 + . gene_id "ERV316A3_4q22.1d"; transcript_id "ERV316A3_4q22.1d"; locus "ERV316A3_4q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0766"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "-176"; repStart "4517"; chr4 rmsk exon 91849111 91849281 265 + . gene_id "ERV316A3_4q22.1d"; transcript_id "ERV316A3_4q22.1d"; locus "ERV316A3_4q22.1d"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0766"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "-2"; repStart "392"; ### HERVL_4q22.1a ### chr4 rmsk gene 91888713 91894977 . + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0385"; model_cov "3506"; model_pct "62.0"; chr4 rmsk exon 91888713 91889109 2813 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "5"; chr4 rmsk exon 91889204 91889259 295 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "388"; chr4 rmsk exon 91889260 91889676 3111 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "417"; repFamily "ERVL"; repLeft "-5237"; repStart "1"; chr4 rmsk exon 91890680 91891742 8231 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "3637"; repFamily "ERVL"; repLeft "-2017"; repStart "2562"; chr4 rmsk exon 91892156 91893569 15136 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "5060"; repFamily "ERVL"; repLeft "-594"; repStart "3638"; chr4 rmsk exon 91893923 91894549 15136 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5061"; chr4 rmsk exon 91894550 91894977 2714 + . gene_id "HERVL_4q22.1a"; transcript_id "HERVL_4q22.1a"; locus "HERVL_4q22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0385"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-53"; repStart "-110"; ### ERVLE_4q22.1e ### chr4 rmsk gene 91906293 91907174 . + . gene_id "ERVLE_4q22.1e"; transcript_id "ERVLE_4q22.1e"; locus "ERVLE_4q22.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1032"; model_cov "653"; model_pct "11.5"; chr4 rmsk exon 91906293 91906427 423 + . gene_id "ERVLE_4q22.1e"; transcript_id "ERVLE_4q22.1e"; locus "ERVLE_4q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1032"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-3387"; repStart "2136"; chr4 rmsk exon 91906534 91906684 369 + . gene_id "ERVLE_4q22.1e"; transcript_id "ERVLE_4q22.1e"; locus "ERVLE_4q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1032"; repClass "LTR"; repEnd "3457"; repFamily "ERVL"; repLeft "-2210"; repStart "3297"; chr4 rmsk exon 91906828 91907174 427 + . gene_id "ERVLE_4q22.1e"; transcript_id "ERVLE_4q22.1e"; locus "ERVLE_4q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1032"; repClass "LTR"; repEnd "3889"; repFamily "ERVL"; repLeft "-1778"; repStart "3540"; ### ERVLB4_4q22.1b ### chr4 rmsk gene 91957036 91960969 . + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0473"; model_cov "3453"; model_pct "60.4"; chr4 rmsk exon 91957036 91957229 1080 + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0473"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "-322"; repStart "3"; chr4 rmsk exon 91957212 91957366 547 + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0473"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "363"; chr4 rmsk exon 91957367 91959642 18215 + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0473"; repClass "LTR"; repEnd "2269"; repFamily "ERVL"; repLeft "-3445"; repStart "1"; chr4 rmsk exon 91959739 91960911 18215 + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0473"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-2309"; repStart "2270"; chr4 rmsk exon 91960919 91960969 308 + . gene_id "ERVLB4_4q22.1b"; transcript_id "ERVLB4_4q22.1b"; locus "ERVLB4_4q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0473"; repClass "LTR"; repEnd "5095"; repFamily "ERVL"; repLeft "-619"; repStart "5045"; ### ERV316A3_4q22.1e ### chr4 rmsk gene 91976444 91977413 . + . gene_id "ERV316A3_4q22.1e"; transcript_id "ERV316A3_4q22.1e"; locus "ERV316A3_4q22.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0768"; model_cov "602"; model_pct "11.5"; chr4 rmsk exon 91976444 91976509 1141 + . gene_id "ERV316A3_4q22.1e"; transcript_id "ERV316A3_4q22.1e"; locus "ERV316A3_4q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0768"; repClass "LTR"; repEnd "4526"; repFamily "ERVL"; repLeft "-700"; repStart "4461"; chr4 rmsk exon 91976870 91977413 1141 + . gene_id "ERV316A3_4q22.1e"; transcript_id "ERV316A3_4q22.1e"; locus "ERV316A3_4q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0768"; repClass "LTR"; repEnd "5064"; repFamily "ERVL"; repLeft "-162"; repStart "4527"; ### HERVH_4q22.1h ### chr4 rmsk gene 92025772 92031162 . + . gene_id "HERVH_4q22.1h"; transcript_id "HERVH_4q22.1h"; locus "HERVH_4q22.1h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0386"; model_cov "3997"; model_pct "51.8"; chr4 rmsk exon 92025772 92026242 3924 + . gene_id "HERVH_4q22.1h"; transcript_id "HERVH_4q22.1h"; locus "HERVH_4q22.1h"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0386"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 92026243 92027974 8473 + . gene_id "HERVH_4q22.1h"; transcript_id "HERVH_4q22.1h"; locus "HERVH_4q22.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0386"; repClass "LTR"; repEnd "1514"; repFamily "ERV1"; repLeft "-6199"; repStart "1"; chr4 rmsk exon 92028009 92030692 19179 + . gene_id "HERVH_4q22.1h"; transcript_id "HERVH_4q22.1h"; locus "HERVH_4q22.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0386"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5229"; chr4 rmsk exon 92030693 92031162 4025 + . gene_id "HERVH_4q22.1h"; transcript_id "HERVH_4q22.1h"; locus "HERVH_4q22.1h"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0386"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4q22.1 ### chr4 rmsk gene 92031194 92037894 . - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0223"; model_cov "6049"; model_pct "91.7"; chr4 rmsk exon 92031194 92033880 15805 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3837"; repStart "-2"; chr4 rmsk exon 92033934 92034490 3305 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "3533"; repFamily "ERV1"; repLeft "2953"; repStart "-3065"; chr4 rmsk exon 92034783 92035016 3305 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "2724"; repStart "-3646"; chr4 rmsk exon 92035022 92035374 1937 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "2105"; repFamily "ERV1"; repLeft "1756"; repStart "-4493"; chr4 rmsk exon 92035372 92036369 5110 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "1035"; repFamily "ERV1"; repLeft "10"; repStart "-5563"; chr4 rmsk exon 92036371 92036729 1303 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2111"; repStart "-4170"; chr4 rmsk exon 92036753 92036895 450 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-739"; repStart "-7231"; chr4 rmsk exon 92036864 92037446 2840 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0223"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr4 rmsk exon 92037454 92037894 2977 - . gene_id "MER4_4q22.1"; transcript_id "MER4_4q22.1"; locus "MER4_4q22.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0223"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "1"; repStart "-4"; ### HARLEQUIN_4q22.1b ### chr4 rmsk gene 92038430 92046521 . - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0062"; model_cov "6894"; model_pct "100.0"; chr4 rmsk exon 92038430 92038659 3351 - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0062"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "233"; repStart "0"; chr4 rmsk exon 92038688 92038896 3351 - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0062"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "2"; repStart "-231"; chr4 rmsk exon 92038897 92045289 53681 - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0062"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "476"; repStart "0"; chr4 rmsk exon 92045594 92046059 53681 - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0062"; repClass "LTR"; repEnd "475"; repFamily "ERV1"; repLeft "1"; repStart "-6421"; chr4 rmsk exon 92046060 92046521 3667 - . gene_id "HARLEQUIN_4q22.1b"; transcript_id "HARLEQUIN_4q22.1b"; locus "HARLEQUIN_4q22.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0062"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_4q22.1c ### chr4 rmsk gene 92088882 92091747 . - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0143"; model_cov "2178"; model_pct "36.6"; chr4 rmsk exon 92088882 92089048 1074 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0143"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "355"; repStart "0"; chr4 rmsk exon 92089050 92089095 376 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0143"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "476"; repStart "0"; chr4 rmsk exon 92089097 92089614 2914 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0143"; repClass "LTR"; repEnd "3576"; repFamily "ERV1"; repLeft "3039"; repStart "-2370"; chr4 rmsk exon 92090164 92090339 947 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0143"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "930"; repStart "-4854"; chr4 rmsk exon 92090324 92091130 4212 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0143"; repClass "LTR"; repEnd "-111"; repFamily "ERV1"; repLeft "-1590"; repStart "-6057"; chr4 rmsk exon 92091196 92091747 4123 - . gene_id "MER41_4q22.1c"; transcript_id "MER41_4q22.1c"; locus "MER41_4q22.1c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0143"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_4q22.1c ### chr4 rmsk gene 92141169 92142848 . + . gene_id "ERVLB4_4q22.1c"; transcript_id "ERVLB4_4q22.1c"; locus "ERVLB4_4q22.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0476"; model_cov "1267"; model_pct "22.2"; chr4 rmsk exon 92141169 92142392 6463 + . gene_id "ERVLB4_4q22.1c"; transcript_id "ERVLB4_4q22.1c"; locus "ERVLB4_4q22.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0476"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4447"; chr4 rmsk exon 92142393 92142848 1238 + . gene_id "ERVLB4_4q22.1c"; transcript_id "ERVLB4_4q22.1c"; locus "ERVLB4_4q22.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0476"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "93"; ### HERVH_4q22.1i ### chr4 rmsk gene 92271492 92277648 . - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0387"; model_cov "5262"; model_pct "68.2"; chr4 rmsk exon 92271492 92271939 3461 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 92271940 92272319 2523 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 92272318 92272534 1399 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 92272536 92273192 4109 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 92273195 92273698 3343 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 92273699 92273836 855 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "3140"; repStart "-4433"; chr4 rmsk exon 92273816 92276387 15812 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "483"; repStart "-4718"; chr4 rmsk exon 92276389 92277195 5001 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "839"; repFamily "ERV1"; repLeft "1"; repStart "-6874"; chr4 rmsk exon 92277198 92277648 3376 - . gene_id "HERVH_4q22.1i"; transcript_id "HERVH_4q22.1i"; locus "HERVH_4q22.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0387"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_4q22.1j ### chr4 rmsk gene 92438954 92444654 . - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0388"; model_cov "4916"; model_pct "63.7"; chr4 rmsk exon 92438954 92439404 3413 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 92439405 92439784 2432 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 92439783 92439999 1426 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 92440001 92440659 4349 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 92440662 92441161 3385 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 92441152 92441301 927 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 92441281 92444201 19532 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 92444204 92444654 3246 - . gene_id "HERVH_4q22.1j"; transcript_id "HERVH_4q22.1j"; locus "HERVH_4q22.1j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0388"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_4q22.1b ### chr4 rmsk gene 92519615 92520954 . - . gene_id "HERVL_4q22.1b"; transcript_id "HERVL_4q22.1b"; locus "HERVL_4q22.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0387"; model_cov "892"; model_pct "15.8"; chr4 rmsk exon 92519615 92520062 1722 - . gene_id "HERVL_4q22.1b"; transcript_id "HERVL_4q22.1b"; locus "HERVL_4q22.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "HERVL-int_0387"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "-41"; chr4 rmsk exon 92520063 92520954 3275 - . gene_id "HERVL_4q22.1b"; transcript_id "HERVL_4q22.1b"; locus "HERVL_4q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0387"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4762"; repStart "0"; ### ERVLB4_4q22.1d ### chr4 rmsk gene 92649155 92652370 . - . gene_id "ERVLB4_4q22.1d"; transcript_id "ERVLB4_4q22.1d"; locus "ERVLB4_4q22.1d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0478"; model_cov "2323"; model_pct "40.7"; chr4 rmsk exon 92649155 92649620 1996 - . gene_id "ERVLB4_4q22.1d"; transcript_id "ERVLB4_4q22.1d"; locus "ERVLB4_4q22.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0478"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-34"; repStart "-53"; chr4 rmsk exon 92649629 92649845 1211 - . gene_id "ERVLB4_4q22.1d"; transcript_id "ERVLB4_4q22.1d"; locus "ERVLB4_4q22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0478"; repClass "LTR"; repEnd "5698"; repFamily "ERVL"; repLeft "5476"; repStart "-16"; chr4 rmsk exon 92650072 92652147 12473 - . gene_id "ERVLB4_4q22.1d"; transcript_id "ERVLB4_4q22.1d"; locus "ERVLB4_4q22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0478"; repClass "LTR"; repEnd "5473"; repFamily "ERVL"; repLeft "3372"; repStart "-241"; chr4 rmsk exon 92652161 92652370 1375 - . gene_id "ERVLB4_4q22.1d"; transcript_id "ERVLB4_4q22.1d"; locus "ERVLB4_4q22.1d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0478"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "1"; repStart "-304"; ### HERVL40_4q22.2 ### chr4 rmsk gene 93091489 93094001 . - . gene_id "HERVL40_4q22.2"; transcript_id "HERVL40_4q22.2"; locus "HERVL40_4q22.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0098"; model_cov "2345"; model_pct "42.4"; chr4 rmsk exon 93091489 93093113 1888 - . gene_id "HERVL40_4q22.2"; transcript_id "HERVL40_4q22.2"; locus "HERVL40_4q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0098"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "2957"; repStart "-870"; chr4 rmsk exon 93093135 93093402 786 - . gene_id "HERVL40_4q22.2"; transcript_id "HERVL40_4q22.2"; locus "HERVL40_4q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0098"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "2570"; repStart "-2677"; chr4 rmsk exon 93093699 93094001 579 - . gene_id "HERVL40_4q22.2"; transcript_id "HERVL40_4q22.2"; locus "HERVL40_4q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0098"; repClass "LTR"; repEnd "1349"; repFamily "ERVL"; repLeft "990"; repStart "-4181"; ### ERVLE_4q22.2 ### chr4 rmsk gene 93814139 93819147 . + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1034"; model_cov "2492"; model_pct "44.0"; chr4 rmsk exon 93814139 93814306 268 + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1034"; repClass "LTR"; repEnd "631"; repFamily "ERVL"; repLeft "-5036"; repStart "446"; chr4 rmsk exon 93815153 93815645 588 + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1034"; repClass "LTR"; repEnd "1977"; repFamily "ERVL"; repLeft "-3690"; repStart "1492"; chr4 rmsk exon 93816830 93817307 763 + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1034"; repClass "LTR"; repEnd "2376"; repFamily "ERVL"; repLeft "-3291"; repStart "1895"; chr4 rmsk exon 93817564 93817828 1537 + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1034"; repClass "LTR"; repEnd "2749"; repFamily "ERVL"; repLeft "-2918"; repStart "2451"; chr4 rmsk exon 93818251 93819147 1537 + . gene_id "ERVLE_4q22.2"; transcript_id "ERVLE_4q22.2"; locus "ERVLE_4q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1034"; repClass "LTR"; repEnd "3703"; repFamily "ERVL"; repLeft "-1964"; repStart "2660"; ### HERVH_4q22.2 ### chr4 rmsk gene 94084647 94089891 . - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0389"; model_cov "4916"; model_pct "63.7"; chr4 rmsk exon 94084647 94085063 3033 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-40"; chr4 rmsk exon 94085064 94085442 2481 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 94085441 94085657 1406 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 94085659 94086319 4245 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 94086322 94086826 3393 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 94086817 94086966 953 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 94086946 94089784 16678 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 94089785 94089891 802 - . gene_id "HERVH_4q22.2"; transcript_id "HERVH_4q22.2"; locus "HERVH_4q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0389"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "344"; repStart "0"; ### HERVL_4q22.2 ### chr4 rmsk gene 94152117 94159527 . + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0389"; model_cov "5045"; model_pct "89.2"; chr4 rmsk exon 94152117 94153146 12566 + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0389"; repClass "LTR"; repEnd "1118"; repFamily "ERVL"; repLeft "-4536"; repStart "114"; chr4 rmsk exon 94153449 94153527 12566 + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0389"; repClass "LTR"; repEnd "1201"; repFamily "ERVL"; repLeft "-4453"; repStart "1119"; chr4 rmsk exon 94153592 94154874 12566 + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0389"; repClass "LTR"; repEnd "2558"; repFamily "ERVL"; repLeft "-3096"; repStart "1202"; chr4 rmsk exon 94155186 94157026 12073 + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0389"; repClass "LTR"; repEnd "4619"; repFamily "ERVL"; repLeft "-1035"; repStart "2722"; chr4 rmsk exon 94158824 94159527 4344 + . gene_id "HERVL_4q22.2"; transcript_id "HERVL_4q22.2"; locus "HERVL_4q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0389"; repClass "LTR"; repEnd "5417"; repFamily "ERVL"; repLeft "-237"; repStart "4711"; ### ERVLE_4q22.3a ### chr4 rmsk gene 94241576 94247399 . - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1036"; model_cov "2525"; model_pct "44.6"; chr4 rmsk exon 94241576 94242024 2394 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "3889"; repStart "-1313"; chr4 rmsk exon 94242344 94242621 2394 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "3888"; repFamily "ERVL"; repLeft "3593"; repStart "-1779"; chr4 rmsk exon 94242916 94242969 2394 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "3592"; repFamily "ERVL"; repLeft "3550"; repStart "-2075"; chr4 rmsk exon 94243239 94243560 2394 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "3225"; repStart "-2118"; chr4 rmsk exon 94245895 94246113 1876 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "3074"; repStart "-2377"; chr4 rmsk exon 94246419 94247399 1876 - . gene_id "ERVLE_4q22.3a"; transcript_id "ERVLE_4q22.3a"; locus "ERVLE_4q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1036"; repClass "LTR"; repEnd "3002"; repFamily "ERVL"; repLeft "1819"; repStart "-2665"; ### HERVH_4q22.3a ### chr4 rmsk gene 94293297 94298570 . - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0390"; model_cov "4906"; model_pct "63.6"; chr4 rmsk exon 94293297 94293689 2115 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "416"; repFamily "ERV1"; repLeft "1"; repStart "-48"; chr4 rmsk exon 94293690 94294063 2459 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 94294064 94294278 1248 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 94294280 94294941 3941 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 94294944 94295443 3238 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 94295434 94295581 859 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 94295576 94298463 14403 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 94298464 94298570 890 - . gene_id "HERVH_4q22.3a"; transcript_id "HERVH_4q22.3a"; locus "HERVH_4q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0390"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### HERVH_4q22.3b ### chr4 rmsk gene 94382925 94389260 . - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0391"; model_cov "5778"; model_pct "74.9"; chr4 rmsk exon 94382925 94383320 2047 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 94383321 94383725 2644 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 94383726 94383952 1166 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5591"; repStart "-1894"; chr4 rmsk exon 94383943 94385667 7902 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4551"; repStart "-1290"; chr4 rmsk exon 94385658 94388865 18423 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr4 rmsk exon 94388868 94389260 2456 - . gene_id "HERVH_4q22.3b"; transcript_id "HERVH_4q22.3b"; locus "HERVH_4q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0391"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4q22.3a ### chr4 rmsk gene 94785926 94788613 . + . gene_id "ERV316A3_4q22.3a"; transcript_id "ERV316A3_4q22.3a"; locus "ERV316A3_4q22.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0772"; model_cov "895"; model_pct "17.1"; chr4 rmsk exon 94785926 94786014 290 + . gene_id "ERV316A3_4q22.3a"; transcript_id "ERV316A3_4q22.3a"; locus "ERV316A3_4q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0772"; repClass "LTR"; repEnd "344"; repFamily "ERVL"; repLeft "-4882"; repStart "256"; chr4 rmsk exon 94787807 94788613 1281 + . gene_id "ERV316A3_4q22.3a"; transcript_id "ERV316A3_4q22.3a"; locus "ERV316A3_4q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0772"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-404"; repStart "4015"; ### ERVLE_4q22.3b ### chr4 rmsk gene 95660439 95661378 . - . gene_id "ERVLE_4q22.3b"; transcript_id "ERVLE_4q22.3b"; locus "ERVLE_4q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1037"; model_cov "815"; model_pct "14.4"; chr4 rmsk exon 95660439 95660960 1259 - . gene_id "ERVLE_4q22.3b"; transcript_id "ERVLE_4q22.3b"; locus "ERVLE_4q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1037"; repClass "LTR"; repEnd "1062"; repFamily "ERVL"; repLeft "524"; repStart "-4605"; chr4 rmsk exon 95661094 95661378 270 - . gene_id "ERVLE_4q22.3b"; transcript_id "ERVLE_4q22.3b"; locus "ERVLE_4q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1037"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "104"; repStart "-5286"; ### ERVLB4_4q22.3a ### chr4 rmsk gene 95714591 95720334 . - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0479"; model_cov "4399"; model_pct "77.0"; chr4 rmsk exon 95714591 95715465 22776 - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0479"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "3522"; repStart "-1298"; chr4 rmsk exon 95715889 95718012 22776 - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0479"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "1410"; repStart "-2193"; chr4 rmsk exon 95718298 95719283 22776 - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0479"; repClass "LTR"; repEnd "1409"; repFamily "ERVL"; repLeft "396"; repStart "-4305"; chr4 rmsk exon 95719459 95719839 2035 - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0479"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "1"; repStart "-5332"; chr4 rmsk exon 95719840 95720334 1824 - . gene_id "ERVLB4_4q22.3a"; transcript_id "ERVLB4_4q22.3a"; locus "ERVLB4_4q22.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0479"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4_4q22.3 ### chr4 rmsk gene 95924933 95933456 . + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0225"; model_cov "6255"; model_pct "94.8"; chr4 rmsk exon 95924933 95925380 3226 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0225"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 95925384 95925909 2509 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "605"; repFamily "ERV1"; repLeft "-5993"; repStart "1"; chr4 rmsk exon 95927169 95927306 384 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "813"; repFamily "ERV1"; repLeft "-5785"; repStart "601"; chr4 rmsk exon 95927476 95928887 7855 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "2613"; repFamily "ERV1"; repLeft "-3985"; repStart "994"; chr4 rmsk exon 95929119 95930047 7855 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2614"; chr4 rmsk exon 95930047 95930721 14909 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "4558"; repFamily "ERV1"; repLeft "-2040"; repStart "3837"; chr4 rmsk exon 95931017 95932987 14909 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0225"; repClass "LTR"; repEnd "6591"; repFamily "ERV1"; repLeft "-7"; repStart "4559"; chr4 rmsk exon 95933010 95933456 3130 + . gene_id "MER4_4q22.3"; transcript_id "MER4_4q22.3"; locus "MER4_4q22.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0225"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q22.3b ### chr4 rmsk gene 95953828 95956254 . + . gene_id "ERV316A3_4q22.3b"; transcript_id "ERV316A3_4q22.3b"; locus "ERV316A3_4q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0773"; model_cov "2323"; model_pct "44.5"; chr4 rmsk exon 95953828 95955125 3660 + . gene_id "ERV316A3_4q22.3b"; transcript_id "ERV316A3_4q22.3b"; locus "ERV316A3_4q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0773"; repClass "LTR"; repEnd "1540"; repFamily "ERVL"; repLeft "-3686"; repStart "227"; chr4 rmsk exon 95955158 95955936 2388 + . gene_id "ERV316A3_4q22.3b"; transcript_id "ERV316A3_4q22.3b"; locus "ERV316A3_4q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0773"; repClass "LTR"; repEnd "2599"; repFamily "ERVL"; repLeft "-2627"; repStart "1786"; chr4 rmsk exon 95955966 95956158 388 + . gene_id "ERV316A3_4q22.3b"; transcript_id "ERV316A3_4q22.3b"; locus "ERV316A3_4q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0773"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2304"; repStart "2725"; chr4 rmsk exon 95956169 95956254 357 + . gene_id "ERV316A3_4q22.3b"; transcript_id "ERV316A3_4q22.3b"; locus "ERV316A3_4q22.3b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0773"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-2"; repStart "378"; ### ERVLE_4q22.3c ### chr4 rmsk gene 96020824 96025529 . + . gene_id "ERVLE_4q22.3c"; transcript_id "ERVLE_4q22.3c"; locus "ERVLE_4q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1039"; model_cov "3045"; model_pct "53.7"; chr4 rmsk exon 96020824 96021044 437 + . gene_id "ERVLE_4q22.3c"; transcript_id "ERVLE_4q22.3c"; locus "ERVLE_4q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1039"; repClass "LTR"; repEnd "584"; repFamily "ERVL"; repLeft "-5083"; repStart "363"; chr4 rmsk exon 96022166 96023606 4168 + . gene_id "ERVLE_4q22.3c"; transcript_id "ERVLE_4q22.3c"; locus "ERVLE_4q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1039"; repClass "LTR"; repEnd "2375"; repFamily "ERVL"; repLeft "-3292"; repStart "887"; chr4 rmsk exon 96023889 96024848 3989 + . gene_id "ERVLE_4q22.3c"; transcript_id "ERVLE_4q22.3c"; locus "ERVLE_4q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1039"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "-752"; repStart "3963"; chr4 rmsk exon 96025149 96025529 3989 + . gene_id "ERVLE_4q22.3c"; transcript_id "ERVLE_4q22.3c"; locus "ERVLE_4q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1039"; repClass "LTR"; repEnd "5300"; repFamily "ERVL"; repLeft "-367"; repStart "4916"; ### ERVLB4_4q22.3b ### chr4 rmsk gene 96322381 96327915 . + . gene_id "ERVLB4_4q22.3b"; transcript_id "ERVLB4_4q22.3b"; locus "ERVLB4_4q22.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0480"; model_cov "4350"; model_pct "76.1"; chr4 rmsk exon 96322381 96322687 573 + . gene_id "ERVLB4_4q22.3b"; transcript_id "ERVLB4_4q22.3b"; locus "ERVLB4_4q22.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0480"; repClass "LTR"; repEnd "326"; repFamily "ERVL"; repLeft "-71"; repStart "1"; chr4 rmsk exon 96323083 96323593 1996 + . gene_id "ERVLB4_4q22.3b"; transcript_id "ERVLB4_4q22.3b"; locus "ERVLB4_4q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0480"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-5161"; repStart "34"; chr4 rmsk exon 96324102 96326692 15644 + . gene_id "ERVLB4_4q22.3b"; transcript_id "ERVLB4_4q22.3b"; locus "ERVLB4_4q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0480"; repClass "LTR"; repEnd "3450"; repFamily "ERVL"; repLeft "-2264"; repStart "781"; chr4 rmsk exon 96326756 96327915 15644 + . gene_id "ERVLB4_4q22.3b"; transcript_id "ERVLB4_4q22.3b"; locus "ERVLB4_4q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0480"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "-1101"; repStart "3451"; ### ERV316A3_4q22.3c ### chr4 rmsk gene 96564945 96565656 . + . gene_id "ERV316A3_4q22.3c"; transcript_id "ERV316A3_4q22.3c"; locus "ERV316A3_4q22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0774"; model_cov "634"; model_pct "12.1"; chr4 rmsk exon 96564945 96565124 499 + . gene_id "ERV316A3_4q22.3c"; transcript_id "ERV316A3_4q22.3c"; locus "ERV316A3_4q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0774"; repClass "LTR"; repEnd "1981"; repFamily "ERVL"; repLeft "-3245"; repStart "1806"; chr4 rmsk exon 96565180 96565357 492 + . gene_id "ERV316A3_4q22.3c"; transcript_id "ERV316A3_4q22.3c"; locus "ERV316A3_4q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0774"; repClass "LTR"; repEnd "3072"; repFamily "ERVL"; repLeft "-2154"; repStart "2890"; chr4 rmsk exon 96565393 96565656 590 + . gene_id "ERV316A3_4q22.3c"; transcript_id "ERV316A3_4q22.3c"; locus "ERV316A3_4q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0774"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2808"; ### HERVL_4q22.3a ### chr4 rmsk gene 96925105 96930978 . + . gene_id "HERVL_4q22.3a"; transcript_id "HERVL_4q22.3a"; locus "HERVL_4q22.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0391"; model_cov "5515"; model_pct "97.5"; chr4 rmsk exon 96925105 96930538 41957 + . gene_id "HERVL_4q22.3a"; transcript_id "HERVL_4q22.3a"; locus "HERVL_4q22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0391"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "139"; chr4 rmsk exon 96930539 96930978 3605 + . gene_id "HERVL_4q22.3a"; transcript_id "HERVL_4q22.3a"; locus "HERVL_4q22.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0391"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HML3_4q22.3a ### chr4 rmsk gene 97096906 97102604 . - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0066"; model_cov "4754"; model_pct "79.0"; chr4 rmsk exon 97096906 97097393 3721 - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0066"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 97097394 97100372 24006 - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0066"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3041"; repStart "0"; chr4 rmsk exon 97100358 97101553 9701 - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0066"; repClass "LTR"; repEnd "2631"; repFamily "ERVK"; repLeft "1436"; repStart "-3390"; chr4 rmsk exon 97101552 97102115 4253 - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0066"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr4 rmsk exon 97102116 97102604 3606 - . gene_id "HML3_4q22.3a"; transcript_id "HML3_4q22.3a"; locus "HML3_4q22.3a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0066"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_4q22.3c ### chr4 rmsk gene 97136992 97140080 . - . gene_id "HERVH_4q22.3c"; transcript_id "HERVH_4q22.3c"; locus "HERVH_4q22.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0392"; model_cov "2696"; model_pct "35.0"; chr4 rmsk exon 97136992 97137199 1405 - . gene_id "HERVH_4q22.3c"; transcript_id "HERVH_4q22.3c"; locus "HERVH_4q22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0392"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "239"; repStart "-2"; chr4 rmsk exon 97137209 97139631 12839 - . gene_id "HERVH_4q22.3c"; transcript_id "HERVH_4q22.3c"; locus "HERVH_4q22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0392"; repClass "LTR"; repEnd "2716"; repFamily "ERV1"; repLeft "20"; repStart "-4997"; chr4 rmsk exon 97139672 97140080 2127 - . gene_id "HERVH_4q22.3c"; transcript_id "HERVH_4q22.3c"; locus "HERVH_4q22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0392"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4q22.3d ### chr4 rmsk gene 97224847 97228219 . - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0775"; model_cov "2589"; model_pct "49.5"; chr4 rmsk exon 97224847 97225271 1355 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "2"; repStart "-8"; chr4 rmsk exon 97225274 97225680 1019 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "4174"; repStart "-370"; chr4 rmsk exon 97225685 97226150 1302 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4328"; repStart "-447"; chr4 rmsk exon 97226137 97227188 1986 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "828"; repStart "-3251"; chr4 rmsk exon 97227277 97227571 568 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "171"; repStart "-4746"; chr4 rmsk exon 97227772 97228219 1539 - . gene_id "ERV316A3_4q22.3d"; transcript_id "ERV316A3_4q22.3d"; locus "ERV316A3_4q22.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0775"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVL_4q22.3b ### chr4 rmsk gene 97379684 97385020 . + . gene_id "HERVL_4q22.3b"; transcript_id "HERVL_4q22.3b"; locus "HERVL_4q22.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0392"; model_cov "4628"; model_pct "81.9"; chr4 rmsk exon 97379684 97380138 3333 + . gene_id "HERVL_4q22.3b"; transcript_id "HERVL_4q22.3b"; locus "HERVL_4q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0392"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 97380142 97384715 35448 + . gene_id "HERVL_4q22.3b"; transcript_id "HERVL_4q22.3b"; locus "HERVL_4q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0392"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "-1024"; repStart "2"; chr4 rmsk exon 97384716 97384879 1186 + . gene_id "HERVL_4q22.3b"; transcript_id "HERVL_4q22.3b"; locus "HERVL_4q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0392"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "238"; chr4 rmsk exon 97384966 97385020 402 + . gene_id "HERVL_4q22.3b"; transcript_id "HERVL_4q22.3b"; locus "HERVL_4q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0392"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### HML3_4q22.3b ### chr4 rmsk gene 97696877 97698124 . + . gene_id "HML3_4q22.3b"; transcript_id "HML3_4q22.3b"; locus "HML3_4q22.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0067"; model_cov "736"; model_pct "12.2"; chr4 rmsk exon 97696877 97697612 5669 + . gene_id "HML3_4q22.3b"; transcript_id "HML3_4q22.3b"; locus "HML3_4q22.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0067"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "5283"; chr4 rmsk exon 97697616 97698124 3679 + . gene_id "HML3_4q22.3b"; transcript_id "HML3_4q22.3b"; locus "HML3_4q22.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0067"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_4q22.3c ### chr4 rmsk gene 97698128 97704229 . - . gene_id "HERVL_4q22.3c"; transcript_id "HERVL_4q22.3c"; locus "HERVL_4q22.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0393"; model_cov "5261"; model_pct "93.0"; chr4 rmsk exon 97698128 97703350 39916 - . gene_id "HERVL_4q22.3c"; transcript_id "HERVL_4q22.3c"; locus "HERVL_4q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0393"; repClass "LTR"; repEnd "5262"; repFamily "ERVL"; repLeft "1"; repStart "-392"; chr4 rmsk exon 97703351 97703421 323 - . gene_id "HERVL_4q22.3c"; transcript_id "HERVL_4q22.3c"; locus "HERVL_4q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0393"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr4 rmsk exon 97703816 97704229 3001 - . gene_id "HERVL_4q22.3c"; transcript_id "HERVL_4q22.3c"; locus "HERVL_4q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0393"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVLB4_4q22.3c ### chr4 rmsk gene 97814976 97816698 . + . gene_id "ERVLB4_4q22.3c"; transcript_id "ERVLB4_4q22.3c"; locus "ERVLB4_4q22.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0482"; model_cov "623"; model_pct "10.9"; chr4 rmsk exon 97814976 97815268 3062 + . gene_id "ERVLB4_4q22.3c"; transcript_id "ERVLB4_4q22.3c"; locus "ERVLB4_4q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0482"; repClass "LTR"; repEnd "5385"; repFamily "ERVL"; repLeft "-329"; repStart "5090"; chr4 rmsk exon 97815514 97815823 3062 + . gene_id "ERVLB4_4q22.3c"; transcript_id "ERVLB4_4q22.3c"; locus "ERVLB4_4q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0482"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5386"; chr4 rmsk exon 97815824 97815880 1173 + . gene_id "ERVLB4_4q22.3c"; transcript_id "ERVLB4_4q22.3c"; locus "ERVLB4_4q22.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0482"; repClass "LTR"; repEnd "57"; repFamily "ERVL"; repLeft "-463"; repStart "1"; chr4 rmsk exon 97816521 97816698 1173 + . gene_id "ERVLB4_4q22.3c"; transcript_id "ERVLB4_4q22.3c"; locus "ERVLB4_4q22.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0482"; repClass "LTR"; repEnd "229"; repFamily "ERVL"; repLeft "-291"; repStart "58"; ### MER41_4q22.3 ### chr4 rmsk gene 97823518 97824301 . + . gene_id "MER41_4q22.3"; transcript_id "MER41_4q22.3"; locus "MER41_4q22.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0144"; model_cov "634"; model_pct "10.7"; chr4 rmsk exon 97823518 97823672 1095 + . gene_id "MER41_4q22.3"; transcript_id "MER41_4q22.3"; locus "MER41_4q22.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0144"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "479"; chr4 rmsk exon 97823673 97824301 4091 + . gene_id "MER41_4q22.3"; transcript_id "MER41_4q22.3"; locus "MER41_4q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0144"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-5311"; repStart "1"; ### PABLA_4q22.3 ### chr4 rmsk gene 97824370 97828086 . + . gene_id "PABLA_4q22.3"; transcript_id "PABLA_4q22.3"; locus "PABLA_4q22.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0035"; model_cov "4044"; model_pct "80.6"; chr4 rmsk exon 97824370 97825095 2307 + . gene_id "PABLA_4q22.3"; transcript_id "PABLA_4q22.3"; locus "PABLA_4q22.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0035"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "-3929"; repStart "173"; chr4 rmsk exon 97825092 97827236 9677 + . gene_id "PABLA_4q22.3"; transcript_id "PABLA_4q22.3"; locus "PABLA_4q22.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0035"; repClass "LTR"; repEnd "3856"; repFamily "ERV1"; repLeft "-1159"; repStart "1269"; chr4 rmsk exon 97827535 97828086 9677 + . gene_id "PABLA_4q22.3"; transcript_id "PABLA_4q22.3"; locus "PABLA_4q22.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0035"; repClass "LTR"; repEnd "4401"; repFamily "ERV1"; repLeft "-614"; repStart "3857"; ### ERVLE_4q23a ### chr4 rmsk gene 97919871 97920801 . + . gene_id "ERVLE_4q23a"; transcript_id "ERVLE_4q23a"; locus "ERVLE_4q23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1045"; model_cov "967"; model_pct "17.1"; chr4 rmsk exon 97919871 97920801 2547 + . gene_id "ERVLE_4q23a"; transcript_id "ERVLE_4q23a"; locus "ERVLE_4q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1045"; repClass "LTR"; repEnd "5290"; repFamily "ERVL"; repLeft "-377"; repStart "4323"; ### ERVLE_4q23b ### chr4 rmsk gene 98029625 98030409 . - . gene_id "ERVLE_4q23b"; transcript_id "ERVLE_4q23b"; locus "ERVLE_4q23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1046"; model_cov "817"; model_pct "14.4"; chr4 rmsk exon 98029625 98030168 1861 - . gene_id "ERVLE_4q23b"; transcript_id "ERVLE_4q23b"; locus "ERVLE_4q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1046"; repClass "LTR"; repEnd "3230"; repFamily "ERVL"; repLeft "2663"; repStart "-2437"; chr4 rmsk exon 98030159 98030409 953 - . gene_id "ERVLE_4q23b"; transcript_id "ERVLE_4q23b"; locus "ERVLE_4q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1046"; repClass "LTR"; repEnd "2445"; repFamily "ERVL"; repLeft "2195"; repStart "-3222"; ### HUERSP1_4q23 ### chr4 rmsk gene 98155789 98164542 . + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0063"; model_cov "6977"; model_pct "100.0"; chr4 rmsk exon 98155789 98155931 1104 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "547"; chr4 rmsk exon 98155932 98156024 702 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "-6170"; repStart "1"; chr4 rmsk exon 98156985 98157190 1044 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "293"; repFamily "ERV1"; repLeft "-5970"; repStart "86"; chr4 rmsk exon 98157163 98158229 26999 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "1246"; repFamily "ERV1"; repLeft "-5017"; repStart "214"; chr4 rmsk exon 98158268 98159957 26999 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "2899"; repFamily "ERV1"; repLeft "-3364"; repStart "1247"; chr4 rmsk exon 98160269 98161271 26999 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "3871"; repFamily "ERV1"; repLeft "-2392"; repStart "2900"; chr4 rmsk exon 98161597 98163015 26999 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "5628"; repFamily "ERV1"; repLeft "-635"; repStart "3726"; chr4 rmsk exon 98163314 98163969 17869 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5142"; chr4 rmsk exon 98163970 98164542 3977 + . gene_id "HUERSP1_4q23"; transcript_id "HUERSP1_4q23"; locus "HUERSP1_4q23"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0063"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "-116"; repStart "1"; ### MER101_4q23 ### chr4 rmsk gene 98328796 98335519 . - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0122"; model_cov "4383"; model_pct "66.0"; chr4 rmsk exon 98328796 98328860 356 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0122"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "5889"; repStart "-696"; chr4 rmsk exon 98328884 98329492 2125 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0122"; repClass "LTR"; repEnd "4461"; repFamily "ERV1"; repLeft "3599"; repStart "-2178"; chr4 rmsk exon 98331398 98332540 5445 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0122"; repClass "LTR"; repEnd "3910"; repFamily "ERV1"; repLeft "2753"; repStart "-2729"; chr4 rmsk exon 98332615 98334273 3028 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0122"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "1516"; repStart "-3808"; chr4 rmsk exon 98334263 98335270 3389 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0122"; repClass "LTR"; repEnd "3353"; repFamily "ERV1"; repLeft "2358"; repStart "-3286"; chr4 rmsk exon 98335271 98335519 1266 - . gene_id "MER101_4q23"; transcript_id "MER101_4q23"; locus "MER101_4q23"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0122"; repClass "LTR"; repEnd "258"; repFamily "ERV1"; repLeft "3"; repStart "-187"; ### HERVL18_4q23 ### chr4 rmsk gene 98664913 98667375 . - . gene_id "HERVL18_4q23"; transcript_id "HERVL18_4q23"; locus "HERVL18_4q23"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0046"; model_cov "2145"; model_pct "35.5"; chr4 rmsk exon 98664913 98665251 2399 - . gene_id "HERVL18_4q23"; transcript_id "HERVL18_4q23"; locus "HERVL18_4q23"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0046"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 98665253 98667375 14329 - . gene_id "HERVL18_4q23"; transcript_id "HERVL18_4q23"; locus "HERVL18_4q23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0046"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "3902"; repStart "0"; ### MER41_4q23a ### chr4 rmsk gene 98812930 98818680 . + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0145"; model_cov "4467"; model_pct "75.1"; chr4 rmsk exon 98812930 98813087 1038 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0145"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr4 rmsk exon 98813088 98813782 4491 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "1"; chr4 rmsk exon 98813784 98814139 2071 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-4184"; repStart "1392"; chr4 rmsk exon 98814141 98814256 722 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "1035"; repFamily "ERV1"; repLeft "-4911"; repStart "920"; chr4 rmsk exon 98814256 98814921 4653 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "2856"; repFamily "ERV1"; repLeft "-3090"; repStart "2167"; chr4 rmsk exon 98815224 98815320 4653 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2857"; chr4 rmsk exon 98815310 98815394 8836 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "3066"; repFamily "ERV1"; repLeft "-2880"; repStart "2978"; chr4 rmsk exon 98815421 98815467 8836 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "3114"; repFamily "ERV1"; repLeft "-2832"; repStart "3067"; chr4 rmsk exon 98815761 98817175 11904 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "4467"; repFamily "ERV1"; repLeft "-1479"; repStart "2838"; chr4 rmsk exon 98817461 98818211 11904 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0145"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5193"; chr4 rmsk exon 98818212 98818680 3282 + . gene_id "MER41_4q23a"; transcript_id "MER41_4q23a"; locus "MER41_4q23a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0145"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### HERVL40_4q23 ### chr4 rmsk gene 98828542 98829640 . - . gene_id "HERVL40_4q23"; transcript_id "HERVL40_4q23"; locus "HERVL40_4q23"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0100"; model_cov "883"; model_pct "16.0"; chr4 rmsk exon 98828542 98828558 2961 - . gene_id "HERVL40_4q23"; transcript_id "HERVL40_4q23"; locus "HERVL40_4q23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0100"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "4643"; repStart "-873"; chr4 rmsk exon 98828649 98829489 2961 - . gene_id "HERVL40_4q23"; transcript_id "HERVL40_4q23"; locus "HERVL40_4q23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0100"; repClass "LTR"; repEnd "4642"; repFamily "ERVL"; repLeft "3773"; repStart "-888"; chr4 rmsk exon 98829497 98829640 548 - . gene_id "HERVL40_4q23"; transcript_id "HERVL40_4q23"; locus "HERVL40_4q23"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0100"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "20"; repStart "-351"; ### MER41_4q23b ### chr4 rmsk gene 98844401 98849355 . - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0146"; model_cov "4257"; model_pct "71.6"; chr4 rmsk exon 98844401 98844947 3962 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0146"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr4 rmsk exon 98844950 98847808 18892 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0146"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "3050"; repStart "-3"; chr4 rmsk exon 98847871 98848013 794 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0146"; repClass "LTR"; repEnd "1324"; repFamily "ERV1"; repLeft "1190"; repStart "-4622"; chr4 rmsk exon 98848013 98848181 984 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0146"; repClass "LTR"; repEnd "1787"; repFamily "ERV1"; repLeft "1627"; repStart "-4159"; chr4 rmsk exon 98848162 98848514 2134 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0146"; repClass "LTR"; repEnd "1774"; repFamily "ERV1"; repLeft "1393"; repStart "-4172"; chr4 rmsk exon 98848517 98849204 4770 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0146"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr4 rmsk exon 98849205 98849355 1042 - . gene_id "MER41_4q23b"; transcript_id "MER41_4q23b"; locus "MER41_4q23b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0146"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### ERVLE_4q23c ### chr4 rmsk gene 99103433 99104536 . + . gene_id "ERVLE_4q23c"; transcript_id "ERVLE_4q23c"; locus "ERVLE_4q23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1047"; model_cov "1194"; model_pct "21.1"; chr4 rmsk exon 99103433 99104536 1483 + . gene_id "ERVLE_4q23c"; transcript_id "ERVLE_4q23c"; locus "ERVLE_4q23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1047"; repClass "LTR"; repEnd "1443"; repFamily "ERVL"; repLeft "-4224"; repStart "249"; ### HERVW_4q23 ### chr4 rmsk gene 99104739 99109954 . - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0101"; model_cov "5851"; model_pct "67.8"; chr4 rmsk exon 99104739 99105085 2301 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr4 rmsk exon 99105086 99105377 2307 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 99105368 99105406 322 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr4 rmsk exon 99105400 99107322 10773 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr4 rmsk exon 99107306 99108580 9879 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "753"; repStart "-6610"; chr4 rmsk exon 99108742 99109418 5103 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "17"; repStart "-7939"; chr4 rmsk exon 99109435 99109954 3787 - . gene_id "HERVW_4q23"; transcript_id "HERVW_4q23"; locus "HERVW_4q23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0101"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "260"; repStart "0"; ### ERVLE_4q23d ### chr4 rmsk gene 99110478 99112317 . + . gene_id "ERVLE_4q23d"; transcript_id "ERVLE_4q23d"; locus "ERVLE_4q23d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1048"; model_cov "1629"; model_pct "28.7"; chr4 rmsk exon 99110478 99110619 365 + . gene_id "ERVLE_4q23d"; transcript_id "ERVLE_4q23d"; locus "ERVLE_4q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1048"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2579"; repStart "2847"; chr4 rmsk exon 99110934 99111222 601 + . gene_id "ERVLE_4q23d"; transcript_id "ERVLE_4q23d"; locus "ERVLE_4q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1048"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "-2224"; repStart "2894"; chr4 rmsk exon 99111559 99112317 1897 + . gene_id "ERVLE_4q23d"; transcript_id "ERVLE_4q23d"; locus "ERVLE_4q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1048"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "-1299"; repStart "3529"; ### MER4_4q23a ### chr4 rmsk gene 99149654 99152028 . + . gene_id "MER4_4q23a"; transcript_id "MER4_4q23a"; locus "MER4_4q23a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0226"; model_cov "1494"; model_pct "22.6"; chr4 rmsk exon 99149654 99149724 266 + . gene_id "MER4_4q23a"; transcript_id "MER4_4q23a"; locus "MER4_4q23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0226"; repClass "LTR"; repEnd "-771"; repFamily "ERV1"; repLeft "-7369"; repStart "-841"; chr4 rmsk exon 99149862 99150135 1460 + . gene_id "MER4_4q23a"; transcript_id "MER4_4q23a"; locus "MER4_4q23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0226"; repClass "LTR"; repEnd "6025"; repFamily "ERV1"; repLeft "-573"; repStart "5753"; chr4 rmsk exon 99150131 99150269 831 + . gene_id "MER4_4q23a"; transcript_id "MER4_4q23a"; locus "MER4_4q23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0226"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "-6474"; repStart "-16"; chr4 rmsk exon 99150794 99152028 2553 + . gene_id "MER4_4q23a"; transcript_id "MER4_4q23a"; locus "MER4_4q23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0226"; repClass "LTR"; repEnd "4021"; repFamily "ERV1"; repLeft "-2577"; repStart "3009"; ### MER4_4q23b ### chr4 rmsk gene 99152149 99155660 . + . gene_id "MER4_4q23b"; transcript_id "MER4_4q23b"; locus "MER4_4q23b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0227"; model_cov "927"; model_pct "14.0"; chr4 rmsk exon 99152149 99152351 401 + . gene_id "MER4_4q23b"; transcript_id "MER4_4q23b"; locus "MER4_4q23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0227"; repClass "LTR"; repEnd "2431"; repFamily "ERV1"; repLeft "-4167"; repStart "2264"; chr4 rmsk exon 99154379 99154651 1069 + . gene_id "MER4_4q23b"; transcript_id "MER4_4q23b"; locus "MER4_4q23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0227"; repClass "LTR"; repEnd "4750"; repFamily "ERV1"; repLeft "-1848"; repStart "4531"; chr4 rmsk exon 99155054 99155555 2403 + . gene_id "MER4_4q23b"; transcript_id "MER4_4q23b"; locus "MER4_4q23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0227"; repClass "LTR"; repEnd "6542"; repFamily "ERV1"; repLeft "-56"; repStart "6043"; chr4 rmsk exon 99155618 99155660 259 + . gene_id "MER4_4q23b"; transcript_id "MER4_4q23b"; locus "MER4_4q23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0227"; repClass "LTR"; repEnd "6546"; repFamily "ERV1"; repLeft "-52"; repStart "6504"; ### MER41_4q23c ### chr4 rmsk gene 99165749 99167336 . - . gene_id "MER41_4q23c"; transcript_id "MER41_4q23c"; locus "MER41_4q23c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0147"; model_cov "1036"; model_pct "17.4"; chr4 rmsk exon 99165749 99166257 3336 - . gene_id "MER41_4q23c"; transcript_id "MER41_4q23c"; locus "MER41_4q23c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0147"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "18"; repStart "-88"; chr4 rmsk exon 99166282 99167336 7123 - . gene_id "MER41_4q23c"; transcript_id "MER41_4q23c"; locus "MER41_4q23c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0147"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4910"; repStart "0"; ### HML3_4q23a ### chr4 rmsk gene 99187128 99191541 . - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0068"; model_cov "3401"; model_pct "56.5"; chr4 rmsk exon 99187128 99187639 4071 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 99187642 99189072 10891 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "4595"; repStart "-2"; chr4 rmsk exon 99189074 99189413 2646 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3613"; repStart "-2069"; chr4 rmsk exon 99189411 99190470 8226 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "2495"; repFamily "ERVK"; repLeft "1436"; repStart "-3526"; chr4 rmsk exon 99190469 99191029 3857 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr4 rmsk exon 99191030 99191541 4276 - . gene_id "HML3_4q23a"; transcript_id "HML3_4q23a"; locus "HML3_4q23a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0068"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_4q23a ### chr4 rmsk gene 99192246 99194146 . - . gene_id "HERVL_4q23a"; transcript_id "HERVL_4q23a"; locus "HERVL_4q23a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0394"; model_cov "1903"; model_pct "33.7"; chr4 rmsk exon 99192246 99194146 14145 - . gene_id "HERVL_4q23a"; transcript_id "HERVL_4q23a"; locus "HERVL_4q23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0394"; repClass "LTR"; repEnd "3720"; repFamily "ERVL"; repLeft "1817"; repStart "-1934"; ### HERVL_4q23b ### chr4 rmsk gene 99196812 99199104 . - . gene_id "HERVL_4q23b"; transcript_id "HERVL_4q23b"; locus "HERVL_4q23b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0395"; model_cov "1809"; model_pct "32.0"; chr4 rmsk exon 99196812 99198612 13347 - . gene_id "HERVL_4q23b"; transcript_id "HERVL_4q23b"; locus "HERVL_4q23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0395"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1"; repStart "-3844"; chr4 rmsk exon 99198613 99199104 3146 - . gene_id "HERVL_4q23b"; transcript_id "HERVL_4q23b"; locus "HERVL_4q23b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0395"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML3_4q23b ### chr4 rmsk gene 99367055 99373128 . + . gene_id "HML3_4q23b"; transcript_id "HML3_4q23b"; locus "HML3_4q23b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0069"; model_cov "5164"; model_pct "85.8"; chr4 rmsk exon 99367055 99367562 3933 + . gene_id "HML3_4q23b"; transcript_id "HML3_4q23b"; locus "HML3_4q23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0069"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 99367563 99368133 4354 + . gene_id "HML3_4q23b"; transcript_id "HML3_4q23b"; locus "HML3_4q23b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0069"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr4 rmsk exon 99368132 99372622 33397 + . gene_id "HML3_4q23b"; transcript_id "HML3_4q23b"; locus "HML3_4q23b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0069"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1436"; chr4 rmsk exon 99372623 99373128 3627 + . gene_id "HML3_4q23b"; transcript_id "HML3_4q23b"; locus "HML3_4q23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0069"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_4q23a ### chr4 rmsk gene 99478069 99478890 . + . gene_id "ERVLB4_4q23a"; transcript_id "ERVLB4_4q23a"; locus "ERVLB4_4q23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0483"; model_cov "865"; model_pct "15.1"; chr4 rmsk exon 99478069 99478890 3403 + . gene_id "ERVLB4_4q23a"; transcript_id "ERVLB4_4q23a"; locus "ERVLB4_4q23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0483"; repClass "LTR"; repEnd "5648"; repFamily "ERVL"; repLeft "-66"; repStart "4783"; ### HML3_4q23c ### chr4 rmsk gene 99486388 99492124 . - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0070"; model_cov "4910"; model_pct "81.5"; chr4 rmsk exon 99486388 99486892 4109 - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0070"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 99486893 99489189 17582 - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0070"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr4 rmsk exon 99489190 99489323 1024 - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0070"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2666"; repStart "-3223"; chr4 rmsk exon 99489323 99491780 18623 - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0070"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "1"; repStart "-3540"; chr4 rmsk exon 99491781 99492124 2602 - . gene_id "HML3_4q23c"; transcript_id "HML3_4q23c"; locus "HML3_4q23c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0070"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "177"; repStart "0"; ### MER41_4q23d ### chr4 rmsk gene 99726123 99734925 . - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0148"; model_cov "6039"; model_pct "100.0"; chr4 rmsk exon 99726123 99726679 4209 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0148"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 99726680 99728114 19244 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "4447"; repStart "-3"; chr4 rmsk exon 99728427 99730929 19244 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "4446"; repFamily "ERV1"; repLeft "1957"; repStart "-1500"; chr4 rmsk exon 99731202 99731823 19244 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "1956"; repFamily "ERV1"; repLeft "1165"; repStart "-3990"; chr4 rmsk exon 99732073 99733119 19244 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "1164"; repFamily "ERV1"; repLeft "1"; repStart "-4782"; chr4 rmsk exon 99733130 99733181 256 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "-1708"; repFamily "ERV1"; repLeft "-1778"; repStart "-7654"; chr4 rmsk exon 99734256 99734285 256 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0148"; repClass "LTR"; repEnd "-1779"; repFamily "ERV1"; repLeft "-1809"; repStart "-7725"; chr4 rmsk exon 99734372 99734925 4364 - . gene_id "MER41_4q23d"; transcript_id "MER41_4q23d"; locus "MER41_4q23d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0148"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_4q23b ### chr4 rmsk gene 99875673 99878359 . + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0485"; model_cov "2008"; model_pct "35.1"; chr4 rmsk exon 99875673 99876523 5261 + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0485"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "-2721"; repStart "2140"; chr4 rmsk exon 99876536 99877445 4286 + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0485"; repClass "LTR"; repEnd "5448"; repFamily "ERVL"; repLeft "-266"; repStart "4510"; chr4 rmsk exon 99877450 99877640 619 + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0485"; repClass "LTR"; repEnd "5678"; repFamily "ERVL"; repLeft "-36"; repStart "5495"; chr4 rmsk exon 99877946 99877980 619 + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0485"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5679"; chr4 rmsk exon 99877981 99878359 1808 + . gene_id "ERVLB4_4q23b"; transcript_id "ERVLB4_4q23b"; locus "ERVLB4_4q23b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0485"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVL_4q23c ### chr4 rmsk gene 100027062 100033620 . - . gene_id "HERVL_4q23c"; transcript_id "HERVL_4q23c"; locus "HERVL_4q23c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0396"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 100027062 100027504 3346 - . gene_id "HERVL_4q23c"; transcript_id "HERVL_4q23c"; locus "HERVL_4q23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0396"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr4 rmsk exon 100027505 100033158 40991 - . gene_id "HERVL_4q23c"; transcript_id "HERVL_4q23c"; locus "HERVL_4q23c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0396"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 100033159 100033204 2930 - . gene_id "HERVL_4q23c"; transcript_id "HERVL_4q23c"; locus "HERVL_4q23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0396"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr4 rmsk exon 100033238 100033620 2930 - . gene_id "HERVL_4q23c"; transcript_id "HERVL_4q23c"; locus "HERVL_4q23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0396"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "2"; repStart "-49"; ### MER4_4q24a ### chr4 rmsk gene 100229779 100233932 . - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0228"; model_cov "3017"; model_pct "45.7"; chr4 rmsk exon 100229779 100230204 1441 - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0228"; repClass "LTR"; repEnd "646"; repFamily "ERV1"; repLeft "1"; repStart "-18"; chr4 rmsk exon 100230211 100230416 1120 - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0228"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6387"; repStart "-2"; chr4 rmsk exon 100231610 100232628 6322 - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0228"; repClass "LTR"; repEnd "6392"; repFamily "ERV1"; repLeft "5344"; repStart "-206"; chr4 rmsk exon 100232634 100233121 2861 - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0228"; repClass "LTR"; repEnd "4347"; repFamily "ERV1"; repLeft "3837"; repStart "-2251"; chr4 rmsk exon 100233116 100233932 6173 - . gene_id "MER4_4q24a"; transcript_id "MER4_4q24a"; locus "MER4_4q24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0228"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "2436"; repStart "-2912"; ### MER4_4q24b ### chr4 rmsk gene 100234176 100235567 . - . gene_id "MER4_4q24b"; transcript_id "MER4_4q24b"; locus "MER4_4q24b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0229"; model_cov "2041"; model_pct "30.9"; chr4 rmsk exon 100234176 100235430 6173 - . gene_id "MER4_4q24b"; transcript_id "MER4_4q24b"; locus "MER4_4q24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0229"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "1761"; repStart "-2912"; chr4 rmsk exon 100235429 100235478 314 - . gene_id "MER4_4q24b"; transcript_id "MER4_4q24b"; locus "MER4_4q24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0229"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; chr4 rmsk exon 100235495 100235567 263 - . gene_id "MER4_4q24b"; transcript_id "MER4_4q24b"; locus "MER4_4q24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0229"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "687"; repStart "-5845"; ### PRIMA4_4q24 ### chr4 rmsk gene 100235572 100236528 . - . gene_id "PRIMA4_4q24"; transcript_id "PRIMA4_4q24"; locus "PRIMA4_4q24"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0065"; model_cov "1018"; model_pct "12.3"; chr4 rmsk exon 100235572 100236528 3214 - . gene_id "PRIMA4_4q24"; transcript_id "PRIMA4_4q24"; locus "PRIMA4_4q24"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0065"; repClass "LTR"; repEnd "1019"; repFamily "ERV1"; repLeft "1"; repStart "-7251"; ### ERVLB4_4q24a ### chr4 rmsk gene 100320884 100323094 . + . gene_id "ERVLB4_4q24a"; transcript_id "ERVLB4_4q24a"; locus "ERVLB4_4q24a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0486"; model_cov "1459"; model_pct "25.5"; chr4 rmsk exon 100320884 100322064 8163 + . gene_id "ERVLB4_4q24a"; transcript_id "ERVLB4_4q24a"; locus "ERVLB4_4q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0486"; repClass "LTR"; repEnd "5455"; repFamily "ERVL"; repLeft "-259"; repStart "4254"; chr4 rmsk exon 100322430 100322684 8163 + . gene_id "ERVLB4_4q24a"; transcript_id "ERVLB4_4q24a"; locus "ERVLB4_4q24a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0486"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5456"; chr4 rmsk exon 100322685 100323094 1563 + . gene_id "ERVLB4_4q24a"; transcript_id "ERVLB4_4q24a"; locus "ERVLB4_4q24a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0486"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-89"; repStart "1"; ### ERVLE_4q24a ### chr4 rmsk gene 100330081 100330805 . + . gene_id "ERVLE_4q24a"; transcript_id "ERVLE_4q24a"; locus "ERVLE_4q24a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1049"; model_cov "752"; model_pct "13.3"; chr4 rmsk exon 100330081 100330805 284 + . gene_id "ERVLE_4q24a"; transcript_id "ERVLE_4q24a"; locus "ERVLE_4q24a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1049"; repClass "LTR"; repEnd "1289"; repFamily "ERVL"; repLeft "-4378"; repStart "537"; ### ERVLE_4q24b ### chr4 rmsk gene 100338413 100340350 . + . gene_id "ERVLE_4q24b"; transcript_id "ERVLE_4q24b"; locus "ERVLE_4q24b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1050"; model_cov "1955"; model_pct "34.5"; chr4 rmsk exon 100338413 100339318 1156 + . gene_id "ERVLE_4q24b"; transcript_id "ERVLE_4q24b"; locus "ERVLE_4q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1050"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-3274"; repStart "1471"; chr4 rmsk exon 100339329 100339505 310 + . gene_id "ERVLE_4q24b"; transcript_id "ERVLE_4q24b"; locus "ERVLE_4q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1050"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "-2909"; repStart "2589"; chr4 rmsk exon 100339530 100340350 1535 + . gene_id "ERVLE_4q24b"; transcript_id "ERVLE_4q24b"; locus "ERVLE_4q24b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1050"; repClass "LTR"; repEnd "3676"; repFamily "ERVL"; repLeft "-1991"; repStart "2812"; ### ERV316A3_4q24a ### chr4 rmsk gene 100595473 100596210 . + . gene_id "ERV316A3_4q24a"; transcript_id "ERV316A3_4q24a"; locus "ERV316A3_4q24a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0777"; model_cov "595"; model_pct "11.4"; chr4 rmsk exon 100595473 100595673 605 + . gene_id "ERV316A3_4q24a"; transcript_id "ERV316A3_4q24a"; locus "ERV316A3_4q24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0777"; repClass "LTR"; repEnd "4157"; repFamily "ERVL"; repLeft "-1069"; repStart "3951"; chr4 rmsk exon 100595821 100596210 963 + . gene_id "ERV316A3_4q24a"; transcript_id "ERV316A3_4q24a"; locus "ERV316A3_4q24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0777"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "-110"; repStart "4727"; ### HUERSP3B_4q24a ### chr4 rmsk gene 100620286 100623844 . - . gene_id "HUERSP3B_4q24a"; transcript_id "HUERSP3B_4q24a"; locus "HUERSP3B_4q24a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0045"; model_cov "2743"; model_pct "37.0"; chr4 rmsk exon 100620286 100620818 3227 - . gene_id "HUERSP3B_4q24a"; transcript_id "HUERSP3B_4q24a"; locus "HUERSP3B_4q24a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0045"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "31"; repStart "-87"; chr4 rmsk exon 100621127 100621156 3227 - . gene_id "HUERSP3B_4q24a"; transcript_id "HUERSP3B_4q24a"; locus "HUERSP3B_4q24a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0045"; repClass "LTR"; repEnd "30"; repFamily "ERV1"; repLeft "1"; repStart "-614"; chr4 rmsk exon 100621158 100623808 17283 - . gene_id "HUERSP3B_4q24a"; transcript_id "HUERSP3B_4q24a"; locus "HUERSP3B_4q24a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0045"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "4713"; repStart "-7"; chr4 rmsk exon 100623800 100623844 318 - . gene_id "HUERSP3B_4q24a"; transcript_id "HUERSP3B_4q24a"; locus "HUERSP3B_4q24a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0045"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "3829"; repStart "-3544"; ### ERVLB4_4q24b ### chr4 rmsk gene 100630498 100634574 . - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0487"; model_cov "3128"; model_pct "54.7"; chr4 rmsk exon 100630498 100630564 394 - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0487"; repClass "LTR"; repEnd "113"; repFamily "ERVL"; repLeft "46"; repStart "-443"; chr4 rmsk exon 100630576 100630733 17042 - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0487"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "5546"; repStart "-6"; chr4 rmsk exon 100631106 100633613 17042 - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0487"; repClass "LTR"; repEnd "5545"; repFamily "ERVL"; repLeft "2988"; repStart "-169"; chr4 rmsk exon 100633614 100634120 2470 - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0487"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 100634121 100634574 17042 - . gene_id "ERVLB4_4q24b"; transcript_id "ERVLB4_4q24b"; locus "ERVLB4_4q24b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0487"; repClass "LTR"; repEnd "2987"; repFamily "ERVL"; repLeft "2578"; repStart "-2727"; ### ERVLB4_4q24c ### chr4 rmsk gene 100641378 100642957 . - . gene_id "ERVLB4_4q24c"; transcript_id "ERVLB4_4q24c"; locus "ERVLB4_4q24c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0488"; model_cov "944"; model_pct "16.5"; chr4 rmsk exon 100641378 100641770 2328 - . gene_id "ERVLB4_4q24c"; transcript_id "ERVLB4_4q24c"; locus "ERVLB4_4q24c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0488"; repClass "LTR"; repEnd "2586"; repFamily "ERVL"; repLeft "2190"; repStart "-3128"; chr4 rmsk exon 100641767 100642261 1746 - . gene_id "ERVLB4_4q24c"; transcript_id "ERVLB4_4q24c"; locus "ERVLB4_4q24c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0488"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "1"; repStart "-5165"; chr4 rmsk exon 100642468 100642957 2233 - . gene_id "ERVLB4_4q24c"; transcript_id "ERVLB4_4q24c"; locus "ERVLB4_4q24c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0488"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "1"; repStart "-49"; ### MER4_4q24c ### chr4 rmsk gene 100748048 100750430 . + . gene_id "MER4_4q24c"; transcript_id "MER4_4q24c"; locus "MER4_4q24c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0230"; model_cov "2423"; model_pct "36.7"; chr4 rmsk exon 100748048 100748257 1617 + . gene_id "MER4_4q24c"; transcript_id "MER4_4q24c"; locus "MER4_4q24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0230"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2284"; chr4 rmsk exon 100748558 100749955 6535 + . gene_id "MER4_4q24c"; transcript_id "MER4_4q24c"; locus "MER4_4q24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0230"; repClass "LTR"; repEnd "4861"; repFamily "ERV1"; repLeft "-1737"; repStart "2816"; chr4 rmsk exon 100750254 100750430 6535 + . gene_id "MER4_4q24c"; transcript_id "MER4_4q24c"; locus "MER4_4q24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0230"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-1569"; repStart "4862"; ### ERV316A3_4q24b ### chr4 rmsk gene 100879021 100881653 . + . gene_id "ERV316A3_4q24b"; transcript_id "ERV316A3_4q24b"; locus "ERV316A3_4q24b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0778"; model_cov "2380"; model_pct "45.5"; chr4 rmsk exon 100879021 100879391 642 + . gene_id "ERV316A3_4q24b"; transcript_id "ERV316A3_4q24b"; locus "ERV316A3_4q24b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0778"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "41"; chr4 rmsk exon 100879402 100881653 1756 + . gene_id "ERV316A3_4q24b"; transcript_id "ERV316A3_4q24b"; locus "ERV316A3_4q24b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0778"; repClass "LTR"; repEnd "1850"; repFamily "ERVL"; repLeft "-3376"; repStart "-530"; ### HERVH_4q24a ### chr4 rmsk gene 100991693 100997475 . - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0393"; model_cov "5006"; model_pct "64.9"; chr4 rmsk exon 100991693 100992091 2486 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 100992092 100992468 2420 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 100992469 100992677 1397 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5607"; repStart "-1894"; chr4 rmsk exon 100992686 100992874 1185 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4961"; repStart "-2564"; chr4 rmsk exon 100992874 100993511 4186 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "4621"; repFamily "ERV1"; repLeft "3994"; repStart "-3092"; chr4 rmsk exon 100993522 100994107 3363 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3140"; repStart "-3977"; chr4 rmsk exon 100994087 100997076 17229 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 100997079 100997475 2099 - . gene_id "HERVH_4q24a"; transcript_id "HERVH_4q24a"; locus "HERVH_4q24a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0393"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q24c ### chr4 rmsk gene 101468653 101471863 . + . gene_id "ERVLE_4q24c"; transcript_id "ERVLE_4q24c"; locus "ERVLE_4q24c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1052"; model_cov "2252"; model_pct "39.7"; chr4 rmsk exon 101468653 101468858 574 + . gene_id "ERVLE_4q24c"; transcript_id "ERVLE_4q24c"; locus "ERVLE_4q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1052"; repClass "LTR"; repEnd "2203"; repFamily "ERVL"; repLeft "-3464"; repStart "1996"; chr4 rmsk exon 101469226 101470186 1278 + . gene_id "ERVLE_4q24c"; transcript_id "ERVLE_4q24c"; locus "ERVLE_4q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1052"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "-2015"; repStart "2482"; chr4 rmsk exon 101471016 101471440 1331 + . gene_id "ERVLE_4q24c"; transcript_id "ERVLE_4q24c"; locus "ERVLE_4q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1052"; repClass "LTR"; repEnd "4440"; repFamily "ERVL"; repLeft "-1227"; repStart "3997"; chr4 rmsk exon 101471459 101471863 772 + . gene_id "ERVLE_4q24c"; transcript_id "ERVLE_4q24c"; locus "ERVLE_4q24c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1052"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "4801"; ### ERVLE_4q24d ### chr4 rmsk gene 101518613 101520082 . + . gene_id "ERVLE_4q24d"; transcript_id "ERVLE_4q24d"; locus "ERVLE_4q24d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1053"; model_cov "1400"; model_pct "24.7"; chr4 rmsk exon 101518613 101519604 2305 + . gene_id "ERVLE_4q24d"; transcript_id "ERVLE_4q24d"; locus "ERVLE_4q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1053"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "-2726"; repStart "1892"; chr4 rmsk exon 101519585 101519835 904 + . gene_id "ERVLE_4q24d"; transcript_id "ERVLE_4q24d"; locus "ERVLE_4q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1053"; repClass "LTR"; repEnd "4331"; repFamily "ERVL"; repLeft "-1336"; repStart "4076"; chr4 rmsk exon 101519946 101520082 336 + . gene_id "ERVLE_4q24d"; transcript_id "ERVLE_4q24d"; locus "ERVLE_4q24d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1053"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-1059"; repStart "4512"; ### HERVL_4q24a ### chr4 rmsk gene 101615062 101620297 . - . gene_id "HERVL_4q24a"; transcript_id "HERVL_4q24a"; locus "HERVL_4q24a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0397"; model_cov "4477"; model_pct "79.2"; chr4 rmsk exon 101615062 101615504 3403 - . gene_id "HERVL_4q24a"; transcript_id "HERVL_4q24a"; locus "HERVL_4q24a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0397"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 101615505 101617345 32119 - . gene_id "HERVL_4q24a"; transcript_id "HERVL_4q24a"; locus "HERVL_4q24a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0397"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3808"; repStart "0"; chr4 rmsk exon 101617662 101620297 32119 - . gene_id "HERVL_4q24a"; transcript_id "HERVL_4q24a"; locus "HERVL_4q24a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0397"; repClass "LTR"; repEnd "3807"; repFamily "ERVL"; repLeft "1176"; repStart "-1847"; ### HERVL_4q24b ### chr4 rmsk gene 101757207 101758091 . + . gene_id "HERVL_4q24b"; transcript_id "HERVL_4q24b"; locus "HERVL_4q24b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0398"; model_cov "745"; model_pct "13.2"; chr4 rmsk exon 101757207 101758091 518 + . gene_id "HERVL_4q24b"; transcript_id "HERVL_4q24b"; locus "HERVL_4q24b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0398"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "-2641"; repStart "2268"; ### ERVLB4_4q24d ### chr4 rmsk gene 101775473 101780214 . - . gene_id "ERVLB4_4q24d"; transcript_id "ERVLB4_4q24d"; locus "ERVLB4_4q24d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0489"; model_cov "3443"; model_pct "60.3"; chr4 rmsk exon 101775473 101776069 2100 - . gene_id "ERVLB4_4q24d"; transcript_id "ERVLB4_4q24d"; locus "ERVLB4_4q24d"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0489"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 101776070 101776285 1260 - . gene_id "ERVLB4_4q24d"; transcript_id "ERVLB4_4q24d"; locus "ERVLB4_4q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0489"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5483"; repStart "0"; chr4 rmsk exon 101776617 101776695 8845 - . gene_id "ERVLB4_4q24d"; transcript_id "ERVLB4_4q24d"; locus "ERVLB4_4q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0489"; repClass "LTR"; repEnd "5481"; repFamily "ERVL"; repLeft "5405"; repStart "-233"; chr4 rmsk exon 101777197 101780214 28938 - . gene_id "ERVLB4_4q24d"; transcript_id "ERVLB4_4q24d"; locus "ERVLB4_4q24d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0489"; repClass "LTR"; repEnd "5402"; repFamily "ERVL"; repLeft "2266"; repStart "-312"; ### ERVLB4_4q24e ### chr4 rmsk gene 101780277 101783115 . - . gene_id "ERVLB4_4q24e"; transcript_id "ERVLB4_4q24e"; locus "ERVLB4_4q24e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0490"; model_cov "2264"; model_pct "39.6"; chr4 rmsk exon 101780277 101782453 28938 - . gene_id "ERVLB4_4q24e"; transcript_id "ERVLB4_4q24e"; locus "ERVLB4_4q24e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0490"; repClass "LTR"; repEnd "5402"; repFamily "ERVL"; repLeft "3138"; repStart "-312"; chr4 rmsk exon 101782454 101782496 2845 - . gene_id "ERVLB4_4q24e"; transcript_id "ERVLB4_4q24e"; locus "ERVLB4_4q24e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0490"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "512"; repStart "0"; chr4 rmsk exon 101782580 101783115 2845 - . gene_id "ERVLB4_4q24e"; transcript_id "ERVLB4_4q24e"; locus "ERVLB4_4q24e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0490"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "1"; repStart "-43"; ### ERVLE_4q24e ### chr4 rmsk gene 101816468 101820290 . - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1055"; model_cov "2479"; model_pct "43.7"; chr4 rmsk exon 101816468 101817177 2012 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "3653"; repFamily "ERVL"; repLeft "2855"; repStart "-2014"; chr4 rmsk exon 101817707 101817749 2012 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "2854"; repFamily "ERVL"; repLeft "2819"; repStart "-2813"; chr4 rmsk exon 101817950 101818536 2012 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "2818"; repFamily "ERVL"; repLeft "2208"; repStart "-2849"; chr4 rmsk exon 101818871 101819367 2012 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "2207"; repFamily "ERVL"; repLeft "1715"; repStart "-3460"; chr4 rmsk exon 101819540 101819774 308 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "1304"; repStart "-4091"; chr4 rmsk exon 101820019 101820290 733 - . gene_id "ERVLE_4q24e"; transcript_id "ERVLE_4q24e"; locus "ERVLE_4q24e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1055"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "878"; repStart "-4517"; ### HML3_4q24a ### chr4 rmsk gene 101902727 101906029 . - . gene_id "HML3_4q24a"; transcript_id "HML3_4q24a"; locus "HML3_4q24a"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0071"; model_cov "3380"; model_pct "56.1"; chr4 rmsk exon 101902727 101906029 31522 - . gene_id "HML3_4q24a"; transcript_id "HML3_4q24a"; locus "HML3_4q24a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0071"; repClass "LTR"; repEnd "4156"; repFamily "ERVK"; repLeft "776"; repStart "-1865"; ### HML3_4q24b ### chr4 rmsk gene 101906099 101907187 . - . gene_id "HML3_4q24b"; transcript_id "HML3_4q24b"; locus "HML3_4q24b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0072"; model_cov "774"; model_pct "12.9"; chr4 rmsk exon 101906099 101906854 31522 - . gene_id "HML3_4q24b"; transcript_id "HML3_4q24b"; locus "HML3_4q24b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0072"; repClass "LTR"; repEnd "4156"; repFamily "ERVK"; repLeft "3382"; repStart "-1865"; chr4 rmsk exon 101906855 101907187 2738 - . gene_id "HML3_4q24b"; transcript_id "HML3_4q24b"; locus "HML3_4q24b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0072"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "177"; repStart "0"; ### ERVLE_4q24f ### chr4 rmsk gene 102185856 102188859 . - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1057"; model_cov "1393"; model_pct "24.6"; chr4 rmsk exon 102185856 102186730 3106 - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1057"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "674"; repStart "-4092"; chr4 rmsk exon 102187493 102187707 977 - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1057"; repClass "LTR"; repEnd "684"; repFamily "ERVL"; repLeft "493"; repStart "-4983"; chr4 rmsk exon 102188012 102188105 977 - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1057"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "403"; repStart "-5175"; chr4 rmsk exon 102188142 102188354 941 - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1057"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "191"; repStart "-5264"; chr4 rmsk exon 102188364 102188859 964 - . gene_id "ERVLE_4q24f"; transcript_id "ERVLE_4q24f"; locus "ERVLE_4q24f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1057"; repClass "LTR"; repEnd "541"; repFamily "ERVL"; repLeft "3"; repStart "-122"; ### ERVLE_4q24g ### chr4 rmsk gene 102271200 102271959 . + . gene_id "ERVLE_4q24g"; transcript_id "ERVLE_4q24g"; locus "ERVLE_4q24g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1058"; model_cov "1027"; model_pct "18.1"; chr4 rmsk exon 102271200 102271959 996 + . gene_id "ERVLE_4q24g"; transcript_id "ERVLE_4q24g"; locus "ERVLE_4q24g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1058"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "-1058"; repStart "3582"; ### HERVL_4q24c ### chr4 rmsk gene 102394255 102397381 . + . gene_id "HERVL_4q24c"; transcript_id "HERVL_4q24c"; locus "HERVL_4q24c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0399"; model_cov "2279"; model_pct "40.3"; chr4 rmsk exon 102394255 102394672 3098 + . gene_id "HERVL_4q24c"; transcript_id "HERVL_4q24c"; locus "HERVL_4q24c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0399"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-37"; repStart "-108"; chr4 rmsk exon 102394673 102396957 18175 + . gene_id "HERVL_4q24c"; transcript_id "HERVL_4q24c"; locus "HERVL_4q24c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0399"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3375"; chr4 rmsk exon 102396958 102397381 3129 + . gene_id "HERVL_4q24c"; transcript_id "HERVL_4q24c"; locus "HERVL_4q24c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0399"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL_4q24d ### chr4 rmsk gene 102741898 102747566 . - . gene_id "HERVL_4q24d"; transcript_id "HERVL_4q24d"; locus "HERVL_4q24d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0400"; model_cov "4922"; model_pct "87.1"; chr4 rmsk exon 102741898 102745356 27389 - . gene_id "HERVL_4q24d"; transcript_id "HERVL_4q24d"; locus "HERVL_4q24d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0400"; repClass "LTR"; repEnd "5238"; repFamily "ERVL"; repLeft "1762"; repStart "-416"; chr4 rmsk exon 102745351 102746690 11279 - . gene_id "HERVL_4q24d"; transcript_id "HERVL_4q24d"; locus "HERVL_4q24d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0400"; repClass "LTR"; repEnd "1448"; repFamily "ERVL"; repLeft "118"; repStart "-4206"; chr4 rmsk exon 102747001 102747118 11279 - . gene_id "HERVL_4q24d"; transcript_id "HERVL_4q24d"; locus "HERVL_4q24d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0400"; repClass "LTR"; repEnd "117"; repFamily "ERVL"; repLeft "1"; repStart "-5537"; chr4 rmsk exon 102747119 102747566 3607 - . gene_id "HERVL_4q24d"; transcript_id "HERVL_4q24d"; locus "HERVL_4q24d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0400"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_4q24h ### chr4 rmsk gene 102779767 102780844 . + . gene_id "ERVLE_4q24h"; transcript_id "ERVLE_4q24h"; locus "ERVLE_4q24h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1060"; model_cov "795"; model_pct "14.0"; chr4 rmsk exon 102779767 102780030 572 + . gene_id "ERVLE_4q24h"; transcript_id "ERVLE_4q24h"; locus "ERVLE_4q24h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1060"; repClass "LTR"; repEnd "2824"; repFamily "ERVL"; repLeft "-2843"; repStart "2540"; chr4 rmsk exon 102780417 102780573 326 + . gene_id "ERVLE_4q24h"; transcript_id "ERVLE_4q24h"; locus "ERVLE_4q24h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1060"; repClass "LTR"; repEnd "3100"; repFamily "ERVL"; repLeft "-2567"; repStart "2883"; chr4 rmsk exon 102780625 102780844 665 + . gene_id "ERVLE_4q24h"; transcript_id "ERVLE_4q24h"; locus "ERVLE_4q24h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1060"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "-590"; repStart "4783"; ### ERVLE_4q24i ### chr4 rmsk gene 102843628 102846283 . - . gene_id "ERVLE_4q24i"; transcript_id "ERVLE_4q24i"; locus "ERVLE_4q24i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1062"; model_cov "1308"; model_pct "23.1"; chr4 rmsk exon 102843628 102844245 1928 - . gene_id "ERVLE_4q24i"; transcript_id "ERVLE_4q24i"; locus "ERVLE_4q24i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1062"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "2238"; repStart "-2832"; chr4 rmsk exon 102844378 102844719 1928 - . gene_id "ERVLE_4q24i"; transcript_id "ERVLE_4q24i"; locus "ERVLE_4q24i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1062"; repClass "LTR"; repEnd "2237"; repFamily "ERVL"; repLeft "1884"; repStart "-3430"; chr4 rmsk exon 102845609 102845781 711 - . gene_id "ERVLE_4q24i"; transcript_id "ERVLE_4q24i"; locus "ERVLE_4q24i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1062"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "1458"; repStart "-4046"; chr4 rmsk exon 102846088 102846283 711 - . gene_id "ERVLE_4q24i"; transcript_id "ERVLE_4q24i"; locus "ERVLE_4q24i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1062"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "1262"; repStart "-4210"; ### ERVLB4_4q24f ### chr4 rmsk gene 103101908 103104683 . + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0491"; model_cov "1023"; model_pct "17.9"; chr4 rmsk exon 103101908 103102332 2085 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr4 rmsk exon 103102794 103102832 281 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-8"; repStart "469"; chr4 rmsk exon 103102837 103102961 5133 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "125"; repFamily "ERVL"; repLeft "-5589"; repStart "1"; chr4 rmsk exon 103103205 103103346 5133 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "-5458"; repStart "126"; chr4 rmsk exon 103103642 103104007 5133 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "-5085"; repStart "257"; chr4 rmsk exon 103104306 103104683 5133 + . gene_id "ERVLB4_4q24f"; transcript_id "ERVLB4_4q24f"; locus "ERVLB4_4q24f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0491"; repClass "LTR"; repEnd "1027"; repFamily "ERVL"; repLeft "-4687"; repStart "630"; ### HARLEQUIN_4q24 ### chr4 rmsk gene 103223627 103231452 . + . gene_id "HARLEQUIN_4q24"; transcript_id "HARLEQUIN_4q24"; locus "HARLEQUIN_4q24"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0063"; model_cov "6895"; model_pct "100.0"; chr4 rmsk exon 103223627 103224083 3567 + . gene_id "HARLEQUIN_4q24"; transcript_id "HARLEQUIN_4q24"; locus "HARLEQUIN_4q24"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0063"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 103224084 103230992 50183 + . gene_id "HARLEQUIN_4q24"; transcript_id "HARLEQUIN_4q24"; locus "HARLEQUIN_4q24"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0063"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 103230993 103231452 3575 + . gene_id "HARLEQUIN_4q24"; transcript_id "HARLEQUIN_4q24"; locus "HARLEQUIN_4q24"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0063"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_4q24g ### chr4 rmsk gene 103270070 103278923 . - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0492"; model_cov "5732"; model_pct "100.0"; chr4 rmsk exon 103270070 103270603 1742 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 103270606 103270740 13064 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5578"; repStart "-2"; chr4 rmsk exon 103271104 103273590 13064 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "5577"; repFamily "ERVL"; repLeft "3042"; repStart "-137"; chr4 rmsk exon 103275077 103275991 14341 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "3057"; repFamily "ERVL"; repLeft "2135"; repStart "-2657"; chr4 rmsk exon 103276277 103277146 14341 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "2134"; repFamily "ERVL"; repLeft "1266"; repStart "-3580"; chr4 rmsk exon 103277451 103278498 14341 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "1265"; repFamily "ERVL"; repLeft "223"; repStart "-4449"; chr4 rmsk exon 103278719 103278923 912 - . gene_id "ERVLB4_4q24g"; transcript_id "ERVLB4_4q24g"; locus "ERVLB4_4q24g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0492"; repClass "LTR"; repEnd "235"; repFamily "ERVL"; repLeft "4"; repStart "-5479"; ### HERVL18_4q24a ### chr4 rmsk gene 103546137 103547472 . - . gene_id "HERVL18_4q24a"; transcript_id "HERVL18_4q24a"; locus "HERVL18_4q24a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0047"; model_cov "617"; model_pct "10.2"; chr4 rmsk exon 103546137 103546234 1294 - . gene_id "HERVL18_4q24a"; transcript_id "HERVL18_4q24a"; locus "HERVL18_4q24a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0047"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "268"; repStart "0"; chr4 rmsk exon 103546538 103546759 1294 - . gene_id "HERVL18_4q24a"; transcript_id "HERVL18_4q24a"; locus "HERVL18_4q24a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0047"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "1"; repStart "-90"; chr4 rmsk exon 103546761 103547364 3906 - . gene_id "HERVL18_4q24a"; transcript_id "HERVL18_4q24a"; locus "HERVL18_4q24a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0047"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5430"; repStart "0"; chr4 rmsk exon 103547369 103547472 657 - . gene_id "HERVL18_4q24a"; transcript_id "HERVL18_4q24a"; locus "HERVL18_4q24a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0047"; repClass "LTR"; repEnd "104"; repFamily "ERVL"; repLeft "1"; repStart "-253"; ### HERVH_4q24b ### chr4 rmsk gene 103553770 103559474 . - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0394"; model_cov "4924"; model_pct "63.8"; chr4 rmsk exon 103553770 103554202 2541 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 103554203 103554579 2406 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 103554580 103554812 1391 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5587"; repStart "-1894"; chr4 rmsk exon 103554798 103555462 4202 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4481"; repStart "-2564"; chr4 rmsk exon 103555462 103555948 3229 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "3500"; repStart "-3722"; chr4 rmsk exon 103555948 103556097 915 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 103556077 103559040 20588 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 103559041 103559474 2620 - . gene_id "HERVH_4q24b"; transcript_id "HERVH_4q24b"; locus "HERVH_4q24b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0394"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL18_4q24b ### chr4 rmsk gene 103751779 103755259 . + . gene_id "HERVL18_4q24b"; transcript_id "HERVL18_4q24b"; locus "HERVL18_4q24b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0048"; model_cov "2874"; model_pct "47.5"; chr4 rmsk exon 103751779 103753396 10628 + . gene_id "HERVL18_4q24b"; transcript_id "HERVL18_4q24b"; locus "HERVL18_4q24b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0048"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "-1237"; repStart "3177"; chr4 rmsk exon 103753746 103754948 7137 + . gene_id "HERVL18_4q24b"; transcript_id "HERVL18_4q24b"; locus "HERVL18_4q24b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0048"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4806"; chr4 rmsk exon 103754950 103755259 2136 + . gene_id "HERVL18_4q24b"; transcript_id "HERVL18_4q24b"; locus "HERVL18_4q24b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0048"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "-39"; repStart "1"; ### HUERSP3B_4q24b ### chr4 rmsk gene 103784819 103792426 . + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0046"; model_cov "6005"; model_pct "81.0"; chr4 rmsk exon 103784819 103785436 4266 + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0046"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 103785455 103787960 15370 + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0046"; repClass "LTR"; repEnd "902"; repFamily "ERV1"; repLeft "-6516"; repStart "-1483"; chr4 rmsk exon 103788272 103788422 5586 + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0046"; repClass "LTR"; repEnd "2313"; repFamily "ERV1"; repLeft "-5105"; repStart "2213"; chr4 rmsk exon 103788477 103788839 5586 + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0046"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2314"; chr4 rmsk exon 103789268 103792426 21523 + . gene_id "HUERSP3B_4q24b"; transcript_id "HUERSP3B_4q24b"; locus "HUERSP3B_4q24b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0046"; repClass "LTR"; repEnd "6265"; repFamily "ERV1"; repLeft "-1153"; repStart "3073"; ### ERVLE_4q24j ### chr4 rmsk gene 103854566 103856263 . + . gene_id "ERVLE_4q24j"; transcript_id "ERVLE_4q24j"; locus "ERVLE_4q24j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1064"; model_cov "757"; model_pct "13.4"; chr4 rmsk exon 103854566 103855003 683 + . gene_id "ERVLE_4q24j"; transcript_id "ERVLE_4q24j"; locus "ERVLE_4q24j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1064"; repClass "LTR"; repEnd "3522"; repFamily "ERVL"; repLeft "-2145"; repStart "3071"; chr4 rmsk exon 103856021 103856263 412 + . gene_id "ERVLE_4q24j"; transcript_id "ERVLE_4q24j"; locus "ERVLE_4q24j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1064"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "-1338"; repStart "4023"; ### HERVH_4q24c ### chr4 rmsk gene 103941268 103947029 . + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0395"; model_cov "5111"; model_pct "66.3"; chr4 rmsk exon 103941268 103941716 3072 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chr4 rmsk exon 103941726 103944554 14822 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 103944534 103945385 5683 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 103945388 103945998 3076 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 103946000 103946215 1464 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 103946216 103946592 2353 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "7708"; repFamily "ERV1"; repLeft "-5"; repStart "7324"; chr4 rmsk exon 103946598 103947029 2929 + . gene_id "HERVH_4q24c"; transcript_id "HERVH_4q24c"; locus "HERVH_4q24c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0395"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### MER4_4q24d ### chr4 rmsk gene 103947033 103953782 . + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0232"; model_cov "5984"; model_pct "90.7"; chr4 rmsk exon 103947033 103947431 2887 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0232"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "72"; chr4 rmsk exon 103947435 103947974 2393 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-6040"; repStart "1"; chr4 rmsk exon 103947971 103948296 1376 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "1287"; repFamily "ERV1"; repLeft "-5311"; repStart "1005"; chr4 rmsk exon 103948323 103948531 1246 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "-4588"; repStart "1804"; chr4 rmsk exon 103949251 103949470 2449 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "2951"; repFamily "ERV1"; repLeft "-3647"; repStart "2737"; chr4 rmsk exon 103949802 103950171 2449 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "3329"; repFamily "ERV1"; repLeft "-3269"; repStart "2952"; chr4 rmsk exon 103950164 103950912 14810 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "4699"; repFamily "ERV1"; repLeft "-1899"; repStart "3921"; chr4 rmsk exon 103951423 103953321 14810 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0232"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3028"; chr4 rmsk exon 103953322 103953782 3113 + . gene_id "MER4_4q24d"; transcript_id "MER4_4q24d"; locus "MER4_4q24d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0232"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_4q24a ### chr4 rmsk gene 103972228 103974714 . + . gene_id "HERV4_4q24a"; transcript_id "HERV4_4q24a"; locus "HERV4_4q24a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0038"; model_cov "2030"; model_pct "31.0"; chr4 rmsk exon 103972228 103973524 5167 + . gene_id "HERV4_4q24a"; transcript_id "HERV4_4q24a"; locus "HERV4_4q24a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0038"; repClass "LTR"; repEnd "-181"; repFamily "ERV1"; repLeft "-6720"; repStart "-1126"; chr4 rmsk exon 103973654 103974714 7288 + . gene_id "HERV4_4q24a"; transcript_id "HERV4_4q24a"; locus "HERV4_4q24a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0038"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "-275"; repStart "5179"; ### HERV4_4q24b ### chr4 rmsk gene 103977803 103979201 . + . gene_id "HERV4_4q24b"; transcript_id "HERV4_4q24b"; locus "HERV4_4q24b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0040"; model_cov "1248"; model_pct "19.1"; chr4 rmsk exon 103977803 103978627 1745 + . gene_id "HERV4_4q24b"; transcript_id "HERV4_4q24b"; locus "HERV4_4q24b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0040"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "-2"; repStart "5289"; chr4 rmsk exon 103978629 103979201 2952 + . gene_id "HERV4_4q24b"; transcript_id "HERV4_4q24b"; locus "HERV4_4q24b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0040"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q24k ### chr4 rmsk gene 104044757 104045753 . + . gene_id "ERVLE_4q24k"; transcript_id "ERVLE_4q24k"; locus "ERVLE_4q24k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1065"; model_cov "1046"; model_pct "18.5"; chr4 rmsk exon 104044757 104044995 723 + . gene_id "ERVLE_4q24k"; transcript_id "ERVLE_4q24k"; locus "ERVLE_4q24k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1065"; repClass "LTR"; repEnd "2868"; repFamily "ERVL"; repLeft "-2799"; repStart "2614"; chr4 rmsk exon 104044994 104045753 2637 + . gene_id "ERVLE_4q24k"; transcript_id "ERVLE_4q24k"; locus "ERVLE_4q24k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1065"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "-425"; repStart "4450"; ### ERV316A3_4q24c ### chr4 rmsk gene 104453698 104455379 . + . gene_id "ERV316A3_4q24c"; transcript_id "ERV316A3_4q24c"; locus "ERV316A3_4q24c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0780"; model_cov "609"; model_pct "11.7"; chr4 rmsk exon 104453698 104454094 1062 + . gene_id "ERV316A3_4q24c"; transcript_id "ERV316A3_4q24c"; locus "ERV316A3_4q24c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0780"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-4"; repStart "18"; chr4 rmsk exon 104454250 104454631 1091 + . gene_id "ERV316A3_4q24c"; transcript_id "ERV316A3_4q24c"; locus "ERV316A3_4q24c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0780"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "-4614"; repStart "181"; chr4 rmsk exon 104454663 104454847 553 + . gene_id "ERV316A3_4q24c"; transcript_id "ERV316A3_4q24c"; locus "ERV316A3_4q24c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0780"; repClass "LTR"; repEnd "1016"; repFamily "ERVL"; repLeft "-4210"; repStart "838"; chr4 rmsk exon 104455191 104455379 531 + . gene_id "ERV316A3_4q24c"; transcript_id "ERV316A3_4q24c"; locus "ERV316A3_4q24c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0780"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "244"; ### ERV316A3_4q24d ### chr4 rmsk gene 104510872 104513960 . + . gene_id "ERV316A3_4q24d"; transcript_id "ERV316A3_4q24d"; locus "ERV316A3_4q24d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0781"; model_cov "2023"; model_pct "38.7"; chr4 rmsk exon 104510872 104511239 1016 + . gene_id "ERV316A3_4q24d"; transcript_id "ERV316A3_4q24d"; locus "ERV316A3_4q24d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0781"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-43"; repStart "13"; chr4 rmsk exon 104511743 104513735 3873 + . gene_id "ERV316A3_4q24d"; transcript_id "ERV316A3_4q24d"; locus "ERV316A3_4q24d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0781"; repClass "LTR"; repEnd "2514"; repFamily "ERVL"; repLeft "-2712"; repStart "491"; chr4 rmsk exon 104513861 104513960 304 + . gene_id "ERV316A3_4q24d"; transcript_id "ERV316A3_4q24d"; locus "ERV316A3_4q24d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0781"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "336"; ### ERV316A3_4q24e ### chr4 rmsk gene 104622676 104624817 . + . gene_id "ERV316A3_4q24e"; transcript_id "ERV316A3_4q24e"; locus "ERV316A3_4q24e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0782"; model_cov "1457"; model_pct "27.9"; chr4 rmsk exon 104622676 104623599 3484 + . gene_id "ERV316A3_4q24e"; transcript_id "ERV316A3_4q24e"; locus "ERV316A3_4q24e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0782"; repClass "LTR"; repEnd "4360"; repFamily "ERVL"; repLeft "-866"; repStart "3422"; chr4 rmsk exon 104623823 104624355 3484 + . gene_id "ERV316A3_4q24e"; transcript_id "ERV316A3_4q24e"; locus "ERV316A3_4q24e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0782"; repClass "LTR"; repEnd "4880"; repFamily "ERVL"; repLeft "-346"; repStart "4361"; chr4 rmsk exon 104624621 104624817 368 + . gene_id "ERV316A3_4q24e"; transcript_id "ERV316A3_4q24e"; locus "ERV316A3_4q24e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0782"; repClass "LTR"; repEnd "197"; repFamily "ERVL"; repLeft "-259"; repStart "4"; ### ERV316A3_4q24f ### chr4 rmsk gene 104769699 104771125 . + . gene_id "ERV316A3_4q24f"; transcript_id "ERV316A3_4q24f"; locus "ERV316A3_4q24f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0783"; model_cov "958"; model_pct "18.3"; chr4 rmsk exon 104769699 104770491 948 + . gene_id "ERV316A3_4q24f"; transcript_id "ERV316A3_4q24f"; locus "ERV316A3_4q24f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0783"; repClass "LTR"; repEnd "3189"; repFamily "ERVL"; repLeft "-2037"; repStart "2231"; chr4 rmsk exon 104770715 104770855 450 + . gene_id "ERV316A3_4q24f"; transcript_id "ERV316A3_4q24f"; locus "ERV316A3_4q24f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0783"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "-307"; repStart "116"; chr4 rmsk exon 104770983 104771056 275 + . gene_id "ERV316A3_4q24f"; transcript_id "ERV316A3_4q24f"; locus "ERV316A3_4q24f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0783"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-290"; repStart "205"; chr4 rmsk exon 104771035 104771125 321 + . gene_id "ERV316A3_4q24f"; transcript_id "ERV316A3_4q24f"; locus "ERV316A3_4q24f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0783"; repClass "LTR"; repEnd "541"; repFamily "ERVL"; repLeft "-27"; repStart "451"; ### ERV316A3_4q24g ### chr4 rmsk gene 105042988 105044163 . - . gene_id "ERV316A3_4q24g"; transcript_id "ERV316A3_4q24g"; locus "ERV316A3_4q24g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0784"; model_cov "903"; model_pct "17.3"; chr4 rmsk exon 105042988 105043300 2561 - . gene_id "ERV316A3_4q24g"; transcript_id "ERV316A3_4q24g"; locus "ERV316A3_4q24g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0784"; repClass "LTR"; repEnd "4087"; repFamily "ERVL"; repLeft "3781"; repStart "-1139"; chr4 rmsk exon 105043602 105044163 2561 - . gene_id "ERV316A3_4q24g"; transcript_id "ERV316A3_4q24g"; locus "ERV316A3_4q24g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0784"; repClass "LTR"; repEnd "3780"; repFamily "ERVL"; repLeft "3183"; repStart "-1446"; ### ERV316A3_4q24h ### chr4 rmsk gene 105064382 105065605 . - . gene_id "ERV316A3_4q24h"; transcript_id "ERV316A3_4q24h"; locus "ERV316A3_4q24h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0785"; model_cov "897"; model_pct "17.2"; chr4 rmsk exon 105064382 105064734 777 - . gene_id "ERV316A3_4q24h"; transcript_id "ERV316A3_4q24h"; locus "ERV316A3_4q24h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0785"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "3181"; repStart "-1760"; chr4 rmsk exon 105064812 105065414 1475 - . gene_id "ERV316A3_4q24h"; transcript_id "ERV316A3_4q24h"; locus "ERV316A3_4q24h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0785"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "33"; repStart "-4581"; chr4 rmsk exon 105065444 105065605 629 - . gene_id "ERV316A3_4q24h"; transcript_id "ERV316A3_4q24h"; locus "ERV316A3_4q24h"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0785"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "312"; repStart "-2"; ### ERVLE_4q24l ### chr4 rmsk gene 105092250 105094260 . + . gene_id "ERVLE_4q24l"; transcript_id "ERVLE_4q24l"; locus "ERVLE_4q24l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1066"; model_cov "1798"; model_pct "31.7"; chr4 rmsk exon 105092250 105092641 430 + . gene_id "ERVLE_4q24l"; transcript_id "ERVLE_4q24l"; locus "ERVLE_4q24l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1066"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-4092"; repStart "1170"; chr4 rmsk exon 105092661 105092946 463 + . gene_id "ERVLE_4q24l"; transcript_id "ERVLE_4q24l"; locus "ERVLE_4q24l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1066"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "-3501"; repStart "1886"; chr4 rmsk exon 105093141 105093679 936 + . gene_id "ERVLE_4q24l"; transcript_id "ERVLE_4q24l"; locus "ERVLE_4q24l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1066"; repClass "LTR"; repEnd "2369"; repFamily "ERVL"; repLeft "-3298"; repStart "1809"; chr4 rmsk exon 105093704 105094260 1098 + . gene_id "ERVLE_4q24l"; transcript_id "ERVLE_4q24l"; locus "ERVLE_4q24l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1066"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "-2771"; repStart "2343"; ### HERVW_4q24 ### chr4 rmsk gene 105487789 105489200 . + . gene_id "HERVW_4q24"; transcript_id "HERVW_4q24"; locus "HERVW_4q24"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0102"; model_cov "1382"; model_pct "16.0"; chr4 rmsk exon 105487789 105488829 8523 + . gene_id "HERVW_4q24"; transcript_id "HERVW_4q24"; locus "HERVW_4q24"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0102"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4966"; chr4 rmsk exon 105488823 105488861 318 + . gene_id "HERVW_4q24"; transcript_id "HERVW_4q24"; locus "HERVW_4q24"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0102"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 105488852 105489142 2352 + . gene_id "HERVW_4q24"; transcript_id "HERVW_4q24"; locus "HERVW_4q24"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0102"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr4 rmsk exon 105489143 105489200 466 + . gene_id "HERVW_4q24"; transcript_id "HERVW_4q24"; locus "HERVW_4q24"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0102"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "-721"; repStart "1"; ### HML5_4q24 ### chr4 rmsk gene 106109837 106114668 . + . gene_id "HML5_4q24"; transcript_id "HML5_4q24"; locus "HML5_4q24"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0034"; model_cov "5308"; model_pct "77.6"; chr4 rmsk exon 106109837 106110304 3301 + . gene_id "HML5_4q24"; transcript_id "HML5_4q24"; locus "HML5_4q24"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0034"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 106110305 106111058 4860 + . gene_id "HML5_4q24"; transcript_id "HML5_4q24"; locus "HML5_4q24"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0034"; repClass "LTR"; repEnd "786"; repFamily "ERVK"; repLeft "-6051"; repStart "1"; chr4 rmsk exon 106111052 106114188 21945 + . gene_id "HML5_4q24"; transcript_id "HML5_4q24"; locus "HML5_4q24"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0034"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2314"; chr4 rmsk exon 106114189 106114668 3180 + . gene_id "HML5_4q24"; transcript_id "HML5_4q24"; locus "HML5_4q24"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0034"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_4q24i ### chr4 rmsk gene 106630691 106632714 . + . gene_id "ERV316A3_4q24i"; transcript_id "ERV316A3_4q24i"; locus "ERV316A3_4q24i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0786"; model_cov "1482"; model_pct "28.4"; chr4 rmsk exon 106630691 106630774 305 + . gene_id "ERV316A3_4q24i"; transcript_id "ERV316A3_4q24i"; locus "ERV316A3_4q24i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0786"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "-1943"; repStart "3197"; chr4 rmsk exon 106630945 106632337 4589 + . gene_id "ERV316A3_4q24i"; transcript_id "ERV316A3_4q24i"; locus "ERV316A3_4q24i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0786"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3830"; chr4 rmsk exon 106632416 106632714 722 + . gene_id "ERV316A3_4q24i"; transcript_id "ERV316A3_4q24i"; locus "ERV316A3_4q24i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0786"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-52"; repStart "83"; ### ERVLE_4q25a ### chr4 rmsk gene 106843101 106846945 . - . gene_id "ERVLE_4q25a"; transcript_id "ERVLE_4q25a"; locus "ERVLE_4q25a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1068"; model_cov "2187"; model_pct "38.6"; chr4 rmsk exon 106843101 106843827 695 - . gene_id "ERVLE_4q25a"; transcript_id "ERVLE_4q25a"; locus "ERVLE_4q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1068"; repClass "LTR"; repEnd "4012"; repFamily "ERVL"; repLeft "3317"; repStart "-1655"; chr4 rmsk exon 106844819 106845292 2016 - . gene_id "ERVLE_4q25a"; transcript_id "ERVLE_4q25a"; locus "ERVLE_4q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1068"; repClass "LTR"; repEnd "2894"; repFamily "ERVL"; repLeft "2411"; repStart "-2773"; chr4 rmsk exon 106845730 106846427 2016 - . gene_id "ERVLE_4q25a"; transcript_id "ERVLE_4q25a"; locus "ERVLE_4q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1068"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "1695"; repStart "-3257"; chr4 rmsk exon 106846673 106846945 340 - . gene_id "ERVLE_4q25a"; transcript_id "ERVLE_4q25a"; locus "ERVLE_4q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1068"; repClass "LTR"; repEnd "1472"; repFamily "ERVL"; repLeft "1178"; repStart "-4195"; ### ERVLE_4q25b ### chr4 rmsk gene 107263882 107266484 . + . gene_id "ERVLE_4q25b"; transcript_id "ERVLE_4q25b"; locus "ERVLE_4q25b"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1069"; model_cov "1545"; model_pct "27.3"; chr4 rmsk exon 107263882 107264019 631 + . gene_id "ERVLE_4q25b"; transcript_id "ERVLE_4q25b"; locus "ERVLE_4q25b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1069"; repClass "LTR"; repEnd "141"; repFamily "ERVL"; repLeft "-522"; repStart "1"; chr4 rmsk exon 107264048 107264448 1259 + . gene_id "ERVLE_4q25b"; transcript_id "ERVLE_4q25b"; locus "ERVLE_4q25b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1069"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4517"; repStart "736"; chr4 rmsk exon 107264711 107265811 2591 + . gene_id "ERVLE_4q25b"; transcript_id "ERVLE_4q25b"; locus "ERVLE_4q25b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1069"; repClass "LTR"; repEnd "2345"; repFamily "ERVL"; repLeft "-3322"; repStart "1214"; chr4 rmsk exon 107265947 107266484 1578 + . gene_id "ERVLE_4q25b"; transcript_id "ERVLE_4q25b"; locus "ERVLE_4q25b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1069"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_4q25a ### chr4 rmsk gene 107290579 107295851 . - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0396"; model_cov "4723"; model_pct "61.2"; chr4 rmsk exon 107290579 107291010 2395 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 107291011 107291451 2787 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr4 rmsk exon 107291456 107292478 6442 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4012"; repStart "-2693"; chr4 rmsk exon 107292455 107293013 3128 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "3605"; repFamily "ERV1"; repLeft "3053"; repStart "-4108"; chr4 rmsk exon 107293008 107295473 11366 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "2734"; repFamily "ERV1"; repLeft "1"; repStart "-4979"; chr4 rmsk exon 107295474 107295851 2117 - . gene_id "HERVH_4q25a"; transcript_id "HERVH_4q25a"; locus "HERVH_4q25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0396"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "10"; repStart "0"; ### HML1_4q25 ### chr4 rmsk gene 107328005 107334793 . + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0026"; model_cov "5947"; model_pct "97.6"; chr4 rmsk exon 107328005 107328454 2499 + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0026"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 107328455 107333874 42716 + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0026"; repClass "LTR"; repEnd "5465"; repFamily "ERVK"; repLeft "-631"; repStart "1"; chr4 rmsk exon 107333874 107334150 2169 + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0026"; repClass "LTR"; repEnd "5936"; repFamily "ERVK"; repLeft "-160"; repStart "5612"; chr4 rmsk exon 107334208 107334342 2169 + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0026"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5937"; chr4 rmsk exon 107334346 107334793 2316 + . gene_id "HML1_4q25"; transcript_id "HML1_4q25"; locus "HML1_4q25"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0026"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVI_4q25 ### chr4 rmsk gene 107379534 107388564 . + . gene_id "HERVI_4q25"; transcript_id "HERVI_4q25"; locus "HERVI_4q25"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0009"; model_cov "7817"; model_pct "100.0"; chr4 rmsk exon 107379534 107380032 3413 + . gene_id "HERVI_4q25"; transcript_id "HERVI_4q25"; locus "HERVI_4q25"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0009"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 107380059 107381238 1660 + . gene_id "HERVI_4q25"; transcript_id "HERVI_4q25"; locus "HERVI_4q25"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0009"; repClass "LTR"; repEnd "1204"; repFamily "ERV1"; repLeft "-6581"; repStart "24"; chr4 rmsk exon 107381420 107388037 27263 + . gene_id "HERVI_4q25"; transcript_id "HERVI_4q25"; locus "HERVI_4q25"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0009"; repClass "LTR"; repEnd "7769"; repFamily "ERV1"; repLeft "-16"; repStart "1132"; chr4 rmsk exon 107388054 107388564 3514 + . gene_id "HERVI_4q25"; transcript_id "HERVI_4q25"; locus "HERVI_4q25"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0009"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_4q25 ### chr4 rmsk gene 107395803 107397158 . + . gene_id "ERVL_4q25"; transcript_id "ERVL_4q25"; locus "ERVL_4q25"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0110"; model_cov "867"; model_pct "15.1"; chr4 rmsk exon 107395803 107395960 379 + . gene_id "ERVL_4q25"; transcript_id "ERVL_4q25"; locus "ERVL_4q25"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0110"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "-274"; repStart "83"; chr4 rmsk exon 107396279 107397158 4000 + . gene_id "ERVL_4q25"; transcript_id "ERVL_4q25"; locus "ERVL_4q25"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0110"; repClass "LTR"; repEnd "983"; repFamily "ERVL"; repLeft "-4774"; repStart "116"; ### HERVIP10FH_4q25 ### chr4 rmsk gene 107413454 107420003 . + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0051"; model_cov "5994"; model_pct "100.0"; chr4 rmsk exon 107413454 107413583 845 + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0051"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "381"; chr4 rmsk exon 107413584 107415125 8212 + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0051"; repClass "LTR"; repEnd "-1100"; repFamily "ERV1"; repLeft "-6202"; repStart "-2681"; chr4 rmsk exon 107415104 107415661 32142 + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0051"; repClass "LTR"; repEnd "1332"; repFamily "ERV1"; repLeft "-3770"; repStart "687"; chr4 rmsk exon 107415713 107419429 32142 + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0051"; repClass "LTR"; repEnd "5101"; repFamily "ERV1"; repLeft "-1"; repStart "1333"; chr4 rmsk exon 107419430 107420003 2671 + . gene_id "HERVIP10FH_4q25"; transcript_id "HERVIP10FH_4q25"; locus "HERVIP10FH_4q25"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0051"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-48"; repStart "1"; ### ERVLE_4q25c ### chr4 rmsk gene 107470891 107471534 . + . gene_id "ERVLE_4q25c"; transcript_id "ERVLE_4q25c"; locus "ERVLE_4q25c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1070"; model_cov "673"; model_pct "11.9"; chr4 rmsk exon 107470891 107471335 677 + . gene_id "ERVLE_4q25c"; transcript_id "ERVLE_4q25c"; locus "ERVLE_4q25c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1070"; repClass "LTR"; repEnd "1718"; repFamily "ERVL"; repLeft "-3949"; repStart "1188"; chr4 rmsk exon 107471393 107471534 515 + . gene_id "ERVLE_4q25c"; transcript_id "ERVLE_4q25c"; locus "ERVLE_4q25c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1070"; repClass "LTR"; repEnd "2317"; repFamily "ERVL"; repLeft "-3350"; repStart "2174"; ### MER61_4q25 ### chr4 rmsk gene 107586249 107590513 . - . gene_id "MER61_4q25"; transcript_id "MER61_4q25"; locus "MER61_4q25"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0124"; model_cov "3661"; model_pct "70.2"; chr4 rmsk exon 107586249 107586531 1424 - . gene_id "MER61_4q25"; transcript_id "MER61_4q25"; locus "MER61_4q25"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0124"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "123"; repStart "-29"; chr4 rmsk exon 107586554 107590019 23820 - . gene_id "MER61_4q25"; transcript_id "MER61_4q25"; locus "MER61_4q25"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0124"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1747"; repStart "0"; chr4 rmsk exon 107590019 107590116 534 - . gene_id "MER61_4q25"; transcript_id "MER61_4q25"; locus "MER61_4q25"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0124"; repClass "LTR"; repEnd "390"; repFamily "ERV1"; repLeft "290"; repStart "-4827"; chr4 rmsk exon 107590424 107590513 409 - . gene_id "MER61_4q25"; transcript_id "MER61_4q25"; locus "MER61_4q25"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0124"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "1"; repStart "-5125"; ### HERVL_4q25a ### chr4 rmsk gene 107722789 107731396 . - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0403"; model_cov "5667"; model_pct "100.0"; chr4 rmsk exon 107722789 107723214 2802 - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0403"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 107723215 107726854 35233 - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0403"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2033"; repStart "0"; chr4 rmsk exon 107727533 107728611 35233 - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0403"; repClass "LTR"; repEnd "2032"; repFamily "ERVL"; repLeft "953"; repStart "-3622"; chr4 rmsk exon 107729928 107730907 7074 - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0403"; repClass "LTR"; repEnd "968"; repFamily "ERVL"; repLeft "1"; repStart "-4686"; chr4 rmsk exon 107730908 107731396 2595 - . gene_id "HERVL_4q25a"; transcript_id "HERVL_4q25a"; locus "HERVL_4q25a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0403"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### PABLB_4q25 ### chr4 rmsk gene 107733279 107741538 . + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0029"; model_cov "7435"; model_pct "100.0"; chr4 rmsk exon 107733279 107733490 766 + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0029"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "456"; chr4 rmsk exon 107733493 107737878 23542 + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0029"; repClass "LTR"; repEnd "4482"; repFamily "ERV1"; repLeft "-2640"; repStart "1"; chr4 rmsk exon 107737880 107738182 1805 + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0029"; repClass "LTR"; repEnd "5888"; repFamily "ERV1"; repLeft "-1234"; repStart "5569"; chr4 rmsk exon 107738187 107740824 14192 + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0029"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "0"; repStart "4487"; chr4 rmsk exon 107741327 107741538 773 + . gene_id "PABLB_4q25"; transcript_id "PABLB_4q25"; locus "PABLB_4q25"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0029"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "456"; ### MER4_4q25a ### chr4 rmsk gene 107883818 107884951 . + . gene_id "MER4_4q25a"; transcript_id "MER4_4q25a"; locus "MER4_4q25a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0235"; model_cov "727"; model_pct "11.0"; chr4 rmsk exon 107883818 107884506 4459 + . gene_id "MER4_4q25a"; transcript_id "MER4_4q25a"; locus "MER4_4q25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0235"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5869"; chr4 rmsk exon 107884512 107884951 3203 + . gene_id "MER4_4q25a"; transcript_id "MER4_4q25a"; locus "MER4_4q25a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0235"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4q25b ### chr4 rmsk gene 107886507 107892905 . - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0236"; model_cov "6590"; model_pct "99.9"; chr4 rmsk exon 107886507 107888941 12241 - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0236"; repClass "LTR"; repEnd "5856"; repFamily "ERV1"; repLeft "1863"; repStart "-742"; chr4 rmsk exon 107889178 107890393 11480 - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0236"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1220"; repStart "-4103"; chr4 rmsk exon 107890692 107891485 11480 - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0236"; repClass "LTR"; repEnd "1219"; repFamily "ERV1"; repLeft "263"; repStart "-5379"; chr4 rmsk exon 107892100 107892455 11480 - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0236"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "1"; repStart "-6231"; chr4 rmsk exon 107892459 107892905 3370 - . gene_id "MER4_4q25b"; transcript_id "MER4_4q25b"; locus "MER4_4q25b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0236"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERV316A3_4q25a ### chr4 rmsk gene 108321520 108325972 . + . gene_id "ERV316A3_4q25a"; transcript_id "ERV316A3_4q25a"; locus "ERV316A3_4q25a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0790"; model_cov "2596"; model_pct "49.7"; chr4 rmsk exon 108321520 108321956 1353 + . gene_id "ERV316A3_4q25a"; transcript_id "ERV316A3_4q25a"; locus "ERV316A3_4q25a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0790"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "8"; chr4 rmsk exon 108322164 108322316 5433 + . gene_id "ERV316A3_4q25a"; transcript_id "ERV316A3_4q25a"; locus "ERV316A3_4q25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0790"; repClass "LTR"; repEnd "1493"; repFamily "ERVL"; repLeft "-3733"; repStart "1347"; chr4 rmsk exon 108323179 108323753 5433 + . gene_id "ERV316A3_4q25a"; transcript_id "ERV316A3_4q25a"; locus "ERV316A3_4q25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0790"; repClass "LTR"; repEnd "1998"; repFamily "ERVL"; repLeft "-3228"; repStart "1494"; chr4 rmsk exon 108324118 108325972 5433 + . gene_id "ERV316A3_4q25a"; transcript_id "ERV316A3_4q25a"; locus "ERV316A3_4q25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0790"; repClass "LTR"; repEnd "3945"; repFamily "ERVL"; repLeft "-1281"; repStart "1999"; ### ERV316A3_4q25b ### chr4 rmsk gene 108326179 108326828 . + . gene_id "ERV316A3_4q25b"; transcript_id "ERV316A3_4q25b"; locus "ERV316A3_4q25b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0791"; model_cov "593"; model_pct "11.3"; chr4 rmsk exon 108326179 108326325 265 + . gene_id "ERV316A3_4q25b"; transcript_id "ERV316A3_4q25b"; locus "ERV316A3_4q25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0791"; repClass "LTR"; repEnd "3850"; repFamily "ERVL"; repLeft "-1376"; repStart "3680"; chr4 rmsk exon 108326420 108326828 947 + . gene_id "ERV316A3_4q25b"; transcript_id "ERV316A3_4q25b"; locus "ERV316A3_4q25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0791"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "4233"; ### ERVLE_4q25d ### chr4 rmsk gene 108643121 108647246 . - . gene_id "ERVLE_4q25d"; transcript_id "ERVLE_4q25d"; locus "ERVLE_4q25d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1072"; model_cov "3485"; model_pct "61.5"; chr4 rmsk exon 108643121 108643220 483 - . gene_id "ERVLE_4q25d"; transcript_id "ERVLE_4q25d"; locus "ERVLE_4q25d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1072"; repClass "LTR"; repEnd "100"; repFamily "ERVL"; repLeft "1"; repStart "-563"; chr4 rmsk exon 108643228 108643278 3640 - . gene_id "ERVLE_4q25d"; transcript_id "ERVLE_4q25d"; locus "ERVLE_4q25d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1072"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "5619"; repStart "-7"; chr4 rmsk exon 108643906 108644724 3640 - . gene_id "ERVLE_4q25d"; transcript_id "ERVLE_4q25d"; locus "ERVLE_4q25d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1072"; repClass "LTR"; repEnd "5618"; repFamily "ERVL"; repLeft "4766"; repStart "-49"; chr4 rmsk exon 108644798 108647246 8817 - . gene_id "ERVLE_4q25d"; transcript_id "ERVLE_4q25d"; locus "ERVLE_4q25d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1072"; repClass "LTR"; repEnd "4643"; repFamily "ERVL"; repLeft "2051"; repStart "-1024"; ### HERVH_4q25b ### chr4 rmsk gene 108710149 108714851 . + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0397"; model_cov "4309"; model_pct "55.9"; chr4 rmsk exon 108710149 108711846 11134 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "2423"; repFamily "ERV1"; repLeft "-5290"; repStart "725"; chr4 rmsk exon 108711845 108712551 4571 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "2285"; chr4 rmsk exon 108712549 108712695 806 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3141"; chr4 rmsk exon 108712695 108713188 3265 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr4 rmsk exon 108713191 108713854 4149 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 108713856 108714072 1377 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 108714073 108714449 2191 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 108714450 108714851 2652 + . gene_id "HERVH_4q25b"; transcript_id "HERVH_4q25b"; locus "HERVH_4q25b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0397"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFRD_4q25 ### chr4 rmsk gene 108725315 108726642 . - . gene_id "HERVFRD_4q25"; transcript_id "HERVFRD_4q25"; locus "HERVFRD_4q25"; category "internal"; intModel "MER50-int"; locid "MER50-int_0058"; model_cov "1031"; model_pct "14.3"; chr4 rmsk exon 108725315 108726003 5427 - . gene_id "HERVFRD_4q25"; transcript_id "HERVFRD_4q25"; locus "HERVFRD_4q25"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0058"; repClass "LTR"; repEnd "4306"; repFamily "ERV1"; repLeft "3585"; repStart "-2899"; chr4 rmsk exon 108726305 108726642 5427 - . gene_id "HERVFRD_4q25"; transcript_id "HERVFRD_4q25"; locus "HERVFRD_4q25"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0058"; repClass "LTR"; repEnd "3584"; repFamily "ERV1"; repLeft "3274"; repStart "-3621"; ### ERV316A3_4q25c ### chr4 rmsk gene 108737438 108740114 . + . gene_id "ERV316A3_4q25c"; transcript_id "ERV316A3_4q25c"; locus "ERV316A3_4q25c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0792"; model_cov "2248"; model_pct "43.0"; chr4 rmsk exon 108737438 108737479 2333 + . gene_id "ERV316A3_4q25c"; transcript_id "ERV316A3_4q25c"; locus "ERV316A3_4q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0792"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "-3236"; repStart "1958"; chr4 rmsk exon 108737894 108738634 2333 + . gene_id "ERV316A3_4q25c"; transcript_id "ERV316A3_4q25c"; locus "ERV316A3_4q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0792"; repClass "LTR"; repEnd "2689"; repFamily "ERVL"; repLeft "-2537"; repStart "1991"; chr4 rmsk exon 108738630 108739396 2842 + . gene_id "ERV316A3_4q25c"; transcript_id "ERV316A3_4q25c"; locus "ERV316A3_4q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0792"; repClass "LTR"; repEnd "4337"; repFamily "ERVL"; repLeft "-889"; repStart "3479"; chr4 rmsk exon 108739476 108740114 2216 + . gene_id "ERV316A3_4q25c"; transcript_id "ERV316A3_4q25c"; locus "ERV316A3_4q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0792"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "-146"; repStart "4420"; ### ERVLB4_4q25a ### chr4 rmsk gene 109250330 109253637 . - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0494"; model_cov "2369"; model_pct "41.5"; chr4 rmsk exon 109250330 109250369 1887 - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0494"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "484"; repStart "0"; chr4 rmsk exon 109250397 109250842 1887 - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0494"; repClass "LTR"; repEnd "483"; repFamily "ERVL"; repLeft "-35"; repStart "-37"; chr4 rmsk exon 109250843 109253030 14004 - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0494"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3489"; repStart "0"; chr4 rmsk exon 109253025 109253169 950 - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0494"; repClass "LTR"; repEnd "145"; repFamily "ERVL"; repLeft "1"; repStart "-5569"; chr4 rmsk exon 109253170 109253637 1982 - . gene_id "ERVLB4_4q25a"; transcript_id "ERVLB4_4q25a"; locus "ERVLB4_4q25a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0494"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_4q25e ### chr4 rmsk gene 109546905 109549504 . + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1074"; model_cov "2092"; model_pct "36.9"; chr4 rmsk exon 109546905 109547287 1245 + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1074"; repClass "LTR"; repEnd "3135"; repFamily "ERVL"; repLeft "-2532"; repStart "2738"; chr4 rmsk exon 109547467 109547683 768 + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1074"; repClass "LTR"; repEnd "3560"; repFamily "ERVL"; repLeft "-2107"; repStart "3344"; chr4 rmsk exon 109547752 109548529 3611 + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1074"; repClass "LTR"; repEnd "4497"; repFamily "ERVL"; repLeft "-1170"; repStart "3680"; chr4 rmsk exon 109548913 109549233 3611 + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1074"; repClass "LTR"; repEnd "4903"; repFamily "ERVL"; repLeft "-764"; repStart "4498"; chr4 rmsk exon 109549245 109549504 595 + . gene_id "ERVLE_4q25e"; transcript_id "ERVLE_4q25e"; locus "ERVLE_4q25e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1074"; repClass "LTR"; repEnd "5215"; repFamily "ERVL"; repLeft "-452"; repStart "4958"; ### ERV316A3_4q25d ### chr4 rmsk gene 109802583 109804649 . - . gene_id "ERV316A3_4q25d"; transcript_id "ERV316A3_4q25d"; locus "ERV316A3_4q25d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0793"; model_cov "1432"; model_pct "27.4"; chr4 rmsk exon 109802583 109802703 302 - . gene_id "ERV316A3_4q25d"; transcript_id "ERV316A3_4q25d"; locus "ERV316A3_4q25d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0793"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "310"; repStart "-8"; chr4 rmsk exon 109802977 109803312 1083 - . gene_id "ERV316A3_4q25d"; transcript_id "ERV316A3_4q25d"; locus "ERV316A3_4q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0793"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "4877"; repStart "-8"; chr4 rmsk exon 109803525 109804649 4103 - . gene_id "ERV316A3_4q25d"; transcript_id "ERV316A3_4q25d"; locus "ERV316A3_4q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0793"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "3768"; repStart "-367"; ### ERV316A3_4q25e ### chr4 rmsk gene 109805023 109806413 . - . gene_id "ERV316A3_4q25e"; transcript_id "ERV316A3_4q25e"; locus "ERV316A3_4q25e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0794"; model_cov "1300"; model_pct "24.9"; chr4 rmsk exon 109805023 109805160 574 - . gene_id "ERV316A3_4q25e"; transcript_id "ERV316A3_4q25e"; locus "ERV316A3_4q25e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0794"; repClass "LTR"; repEnd "5036"; repFamily "ERVL"; repLeft "4900"; repStart "-190"; chr4 rmsk exon 109805168 109805954 1767 - . gene_id "ERV316A3_4q25e"; transcript_id "ERV316A3_4q25e"; locus "ERV316A3_4q25e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0794"; repClass "LTR"; repEnd "3345"; repFamily "ERVL"; repLeft "2633"; repStart "-1881"; chr4 rmsk exon 109805985 109806413 1333 - . gene_id "ERV316A3_4q25e"; transcript_id "ERV316A3_4q25e"; locus "ERV316A3_4q25e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0794"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "2398"; repStart "-2376"; ### HERVK11D_4q25 ### chr4 rmsk gene 109855911 109859937 . - . gene_id "HERVK11D_4q25"; transcript_id "HERVK11D_4q25"; locus "HERVK11D_4q25"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0009"; model_cov "2785"; model_pct "35.9"; chr4 rmsk exon 109855911 109856281 3151 - . gene_id "HERVK11D_4q25"; transcript_id "HERVK11D_4q25"; locus "HERVK11D_4q25"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0009"; repClass "LTR"; repEnd "371"; repFamily "ERVK"; repLeft "1"; repStart "-526"; chr4 rmsk exon 109856282 109859060 23889 - . gene_id "HERVK11D_4q25"; transcript_id "HERVK11D_4q25"; locus "HERVK11D_4q25"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0009"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "4967"; repStart "0"; chr4 rmsk exon 109859069 109859937 7023 - . gene_id "HERVK11D_4q25"; transcript_id "HERVK11D_4q25"; locus "HERVK11D_4q25"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0009"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVFH21_4q25 ### chr4 rmsk gene 110202368 110203765 . - . gene_id "HERVFH21_4q25"; transcript_id "HERVFH21_4q25"; locus "HERVFH21_4q25"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0011"; model_cov "862"; model_pct "13.2"; chr4 rmsk exon 110202368 110202751 2005 - . gene_id "HERVFH21_4q25"; transcript_id "HERVFH21_4q25"; locus "HERVFH21_4q25"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0011"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr4 rmsk exon 110202752 110203635 1976 - . gene_id "HERVFH21_4q25"; transcript_id "HERVFH21_4q25"; locus "HERVFH21_4q25"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0011"; repClass "LTR"; repEnd "6524"; repFamily "ERV1"; repLeft "5662"; repStart "-5"; chr4 rmsk exon 110203674 110203765 663 - . gene_id "HERVFH21_4q25"; transcript_id "HERVFH21_4q25"; locus "HERVFH21_4q25"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0011"; repClass "LTR"; repEnd "180"; repFamily "ERVL"; repLeft "88"; repStart "-331"; ### HERVW_4q25 ### chr4 rmsk gene 110278874 110284444 . - . gene_id "HERVW_4q25"; transcript_id "HERVW_4q25"; locus "HERVW_4q25"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0103"; model_cov "5083"; model_pct "58.9"; chr4 rmsk exon 110278874 110283908 43458 - . gene_id "HERVW_4q25"; transcript_id "HERVW_4q25"; locus "HERVW_4q25"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0103"; repClass "LTR"; repEnd "6993"; repFamily "ERV1"; repLeft "1952"; repStart "-1633"; chr4 rmsk exon 110283896 110283939 250 - . gene_id "HERVW_4q25"; transcript_id "HERVW_4q25"; locus "HERVW_4q25"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0103"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "1"; repStart "-8583"; chr4 rmsk exon 110283940 110284444 3897 - . gene_id "HERVW_4q25"; transcript_id "HERVW_4q25"; locus "HERVW_4q25"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0103"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERVLE_4q25f ### chr4 rmsk gene 110550832 110551533 . + . gene_id "ERVLE_4q25f"; transcript_id "ERVLE_4q25f"; locus "ERVLE_4q25f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1075"; model_cov "570"; model_pct "10.1"; chr4 rmsk exon 110550832 110550971 1633 + . gene_id "ERVLE_4q25f"; transcript_id "ERVLE_4q25f"; locus "ERVLE_4q25f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1075"; repClass "LTR"; repEnd "2615"; repFamily "ERVL"; repLeft "-3052"; repStart "2488"; chr4 rmsk exon 110551108 110551533 1633 + . gene_id "ERVLE_4q25f"; transcript_id "ERVLE_4q25f"; locus "ERVLE_4q25f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1075"; repClass "LTR"; repEnd "3059"; repFamily "ERVL"; repLeft "-2608"; repStart "2616"; ### ERVLB4_4q25b ### chr4 rmsk gene 111170828 111178838 . + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0495"; model_cov "5709"; model_pct "99.9"; chr4 rmsk exon 111170828 111170982 744 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "307"; chr4 rmsk exon 111171523 111171572 278 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "470"; chr4 rmsk exon 111171576 111175919 30725 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-1269"; repStart "3"; chr4 rmsk exon 111176281 111176719 30725 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "-819"; repStart "4446"; chr4 rmsk exon 111177035 111177939 30725 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4896"; chr4 rmsk exon 111177941 111178027 524 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "-469"; repStart "-34"; chr4 rmsk exon 111178434 111178838 1251 + . gene_id "ERVLB4_4q25b"; transcript_id "ERVLB4_4q25b"; locus "ERVLB4_4q25b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0495"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "83"; ### ERVLE_4q25g ### chr4 rmsk gene 111506330 111508261 . - . gene_id "ERVLE_4q25g"; transcript_id "ERVLE_4q25g"; locus "ERVLE_4q25g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1077"; model_cov "1490"; model_pct "26.3"; chr4 rmsk exon 111506330 111507294 1597 - . gene_id "ERVLE_4q25g"; transcript_id "ERVLE_4q25g"; locus "ERVLE_4q25g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1077"; repClass "LTR"; repEnd "3709"; repFamily "ERVL"; repLeft "2632"; repStart "-1958"; chr4 rmsk exon 111507860 111508261 448 - . gene_id "ERVLE_4q25g"; transcript_id "ERVLE_4q25g"; locus "ERVLE_4q25g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1077"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "133"; repStart "-5121"; ### ERVLE_4q25h ### chr4 rmsk gene 112330565 112333779 . - . gene_id "ERVLE_4q25h"; transcript_id "ERVLE_4q25h"; locus "ERVLE_4q25h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1079"; model_cov "3173"; model_pct "56.0"; chr4 rmsk exon 112330565 112332601 4630 - . gene_id "ERVLE_4q25h"; transcript_id "ERVLE_4q25h"; locus "ERVLE_4q25h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1079"; repClass "LTR"; repEnd "4717"; repFamily "ERVL"; repLeft "2589"; repStart "-950"; chr4 rmsk exon 112332606 112333033 1188 - . gene_id "ERVLE_4q25h"; transcript_id "ERVLE_4q25h"; locus "ERVLE_4q25h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1079"; repClass "LTR"; repEnd "2132"; repFamily "ERVL"; repLeft "1693"; repStart "-3535"; chr4 rmsk exon 112333137 112333227 351 - . gene_id "ERVLE_4q25h"; transcript_id "ERVLE_4q25h"; locus "ERVLE_4q25h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1079"; repClass "LTR"; repEnd "1551"; repFamily "ERVL"; repLeft "1449"; repStart "-4116"; chr4 rmsk exon 112333283 112333779 1073 - . gene_id "ERVLE_4q25h"; transcript_id "ERVLE_4q25h"; locus "ERVLE_4q25h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1079"; repClass "LTR"; repEnd "1361"; repFamily "ERVL"; repLeft "857"; repStart "-4306"; ### HERVL_4q25b ### chr4 rmsk gene 112464890 112469114 . - . gene_id "HERVL_4q25b"; transcript_id "HERVL_4q25b"; locus "HERVL_4q25b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0405"; model_cov "3669"; model_pct "64.9"; chr4 rmsk exon 112464890 112464937 274 - . gene_id "HERVL_4q25b"; transcript_id "HERVL_4q25b"; locus "HERVL_4q25b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0405"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr4 rmsk exon 112465096 112465476 2645 - . gene_id "HERVL_4q25b"; transcript_id "HERVL_4q25b"; locus "HERVL_4q25b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0405"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "1"; repStart "-50"; chr4 rmsk exon 112465478 112469114 27467 - . gene_id "HERVL_4q25b"; transcript_id "HERVL_4q25b"; locus "HERVL_4q25b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0405"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "1984"; repStart "-1"; ### HERVL_4q26a ### chr4 rmsk gene 113924122 113930536 . - . gene_id "HERVL_4q26a"; transcript_id "HERVL_4q26a"; locus "HERVL_4q26a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0407"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 113924122 113924504 2928 - . gene_id "HERVL_4q26a"; transcript_id "HERVL_4q26a"; locus "HERVL_4q26a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0407"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr4 rmsk exon 113924505 113930127 43932 - . gene_id "HERVL_4q26a"; transcript_id "HERVL_4q26a"; locus "HERVL_4q26a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0407"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 113930128 113930536 2725 - . gene_id "HERVL_4q26a"; transcript_id "HERVL_4q26a"; locus "HERVL_4q26a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0407"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_4q26a ### chr4 rmsk gene 114037150 114037792 . - . gene_id "ERVLB4_4q26a"; transcript_id "ERVLB4_4q26a"; locus "ERVLB4_4q26a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0497"; model_cov "582"; model_pct "10.2"; chr4 rmsk exon 114037150 114037792 562 - . gene_id "ERVLB4_4q26a"; transcript_id "ERVLB4_4q26a"; locus "ERVLB4_4q26a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0497"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "2973"; repStart "-2159"; ### HERVW_4q26 ### chr4 rmsk gene 114044380 114051816 . + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0104"; model_cov "6531"; model_pct "75.7"; chr4 rmsk exon 114044380 114044904 4089 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr4 rmsk exon 114044905 114045822 14141 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "862"; repFamily "ERV1"; repLeft "-7764"; repStart "1"; chr4 rmsk exon 114045850 114046844 14141 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "-6762"; repStart "863"; chr4 rmsk exon 114046842 114051177 36482 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1679"; chr4 rmsk exon 114051171 114051209 298 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 114051200 114051490 2432 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr4 rmsk exon 114051491 114051816 2716 + . gene_id "HERVW_4q26"; transcript_id "HERVW_4q26"; locus "HERVW_4q26"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0104"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL40_4q26a ### chr4 rmsk gene 114064520 114067417 . + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0103"; model_cov "1602"; model_pct "29.0"; chr4 rmsk exon 114064520 114064864 804 + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0103"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 114064903 114065257 1140 + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0103"; repClass "LTR"; repEnd "864"; repFamily "ERVL"; repLeft "-4666"; repStart "493"; chr4 rmsk exon 114066192 114066717 1157 + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0103"; repClass "LTR"; repEnd "1585"; repFamily "ERVL"; repLeft "-3945"; repStart "1057"; chr4 rmsk exon 114066724 114067263 1892 + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0103"; repClass "LTR"; repEnd "3061"; repFamily "ERVL"; repLeft "-2469"; repStart "2523"; chr4 rmsk exon 114067257 114067417 560 + . gene_id "HERVL40_4q26a"; transcript_id "HERVL40_4q26a"; locus "HERVL40_4q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0103"; repClass "LTR"; repEnd "4095"; repFamily "ERVL"; repLeft "-1435"; repStart "3930"; ### ERVLB4_4q26b ### chr4 rmsk gene 114145036 114145864 . + . gene_id "ERVLB4_4q26b"; transcript_id "ERVLB4_4q26b"; locus "ERVLB4_4q26b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0498"; model_cov "627"; model_pct "11.0"; chr4 rmsk exon 114145036 114145134 381 + . gene_id "ERVLB4_4q26b"; transcript_id "ERVLB4_4q26b"; locus "ERVLB4_4q26b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0498"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-44"; repStart "386"; chr4 rmsk exon 114145210 114145242 271 + . gene_id "ERVLB4_4q26b"; transcript_id "ERVLB4_4q26b"; locus "ERVLB4_4q26b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0498"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-7"; repStart "513"; chr4 rmsk exon 114145247 114145864 2906 + . gene_id "ERVLB4_4q26b"; transcript_id "ERVLB4_4q26b"; locus "ERVLB4_4q26b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0498"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "-5085"; repStart "2"; ### MER61_4q26a ### chr4 rmsk gene 114145863 114149406 . - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0125"; model_cov "1501"; model_pct "28.8"; chr4 rmsk exon 114145863 114146657 4259 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0125"; repClass "LTR"; repEnd "2355"; repFamily "ERV1"; repLeft "1655"; repStart "-2862"; chr4 rmsk exon 114146931 114147026 3057 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0125"; repClass "LTR"; repEnd "2311"; repFamily "ERV1"; repLeft "2221"; repStart "-2906"; chr4 rmsk exon 114147025 114147066 297 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0125"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chr4 rmsk exon 114147129 114147568 2052 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0125"; repClass "LTR"; repEnd "682"; repFamily "ERV1"; repLeft "167"; repStart "-4535"; chr4 rmsk exon 114149122 114149283 2052 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0125"; repClass "LTR"; repEnd "166"; repFamily "ERV1"; repLeft "12"; repStart "-5051"; chr4 rmsk exon 114149295 114149406 722 - . gene_id "MER61_4q26a"; transcript_id "MER61_4q26a"; locus "MER61_4q26a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0125"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "234"; repStart "0"; ### ERVLB4_4q26c ### chr4 rmsk gene 114151942 114154704 . + . gene_id "ERVLB4_4q26c"; transcript_id "ERVLB4_4q26c"; locus "ERVLB4_4q26c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0499"; model_cov "2691"; model_pct "47.1"; chr4 rmsk exon 114151942 114154323 13475 + . gene_id "ERVLB4_4q26c"; transcript_id "ERVLB4_4q26c"; locus "ERVLB4_4q26c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0499"; repClass "LTR"; repEnd "3194"; repFamily "ERVL"; repLeft "-2520"; repStart "766"; chr4 rmsk exon 114154452 114154704 1507 + . gene_id "ERVLB4_4q26c"; transcript_id "ERVLB4_4q26c"; locus "ERVLB4_4q26c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0499"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "-2254"; repStart "3197"; ### ERV316A3_4q26a ### chr4 rmsk gene 114382862 114384154 . + . gene_id "ERV316A3_4q26a"; transcript_id "ERV316A3_4q26a"; locus "ERV316A3_4q26a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0796"; model_cov "1031"; model_pct "19.7"; chr4 rmsk exon 114382862 114383147 807 + . gene_id "ERV316A3_4q26a"; transcript_id "ERV316A3_4q26a"; locus "ERV316A3_4q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0796"; repClass "LTR"; repEnd "3975"; repFamily "ERVL"; repLeft "-1251"; repStart "3674"; chr4 rmsk exon 114383141 114383864 1035 + . gene_id "ERV316A3_4q26a"; transcript_id "ERV316A3_4q26a"; locus "ERV316A3_4q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0796"; repClass "LTR"; repEnd "4950"; repFamily "ERVL"; repLeft "-276"; repStart "4220"; chr4 rmsk exon 114383874 114384154 312 + . gene_id "ERV316A3_4q26a"; transcript_id "ERV316A3_4q26a"; locus "ERV316A3_4q26a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0796"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "24"; ### ERV316A3_4q26b ### chr4 rmsk gene 114394584 114398388 . - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0797"; model_cov "1327"; model_pct "25.4"; chr4 rmsk exon 114394584 114394752 386 - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0797"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "262"; repStart "-24"; chr4 rmsk exon 114394826 114394969 534 - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0797"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "1"; repStart "-312"; chr4 rmsk exon 114394989 114395672 1703 - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0797"; repClass "LTR"; repEnd "5200"; repFamily "ERVL"; repLeft "4508"; repStart "-26"; chr4 rmsk exon 114397506 114397960 1117 - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0797"; repClass "LTR"; repEnd "4301"; repFamily "ERVL"; repLeft "3835"; repStart "-925"; chr4 rmsk exon 114398226 114398388 276 - . gene_id "ERV316A3_4q26b"; transcript_id "ERV316A3_4q26b"; locus "ERV316A3_4q26b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0797"; repClass "LTR"; repEnd "1159"; repFamily "ERVL"; repLeft "990"; repStart "-4067"; ### ERV316A3_4q26c ### chr4 rmsk gene 114418161 114420402 . + . gene_id "ERV316A3_4q26c"; transcript_id "ERV316A3_4q26c"; locus "ERV316A3_4q26c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0798"; model_cov "2318"; model_pct "44.4"; chr4 rmsk exon 114418161 114420402 2909 + . gene_id "ERV316A3_4q26c"; transcript_id "ERV316A3_4q26c"; locus "ERV316A3_4q26c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0798"; repClass "LTR"; repEnd "5002"; repFamily "ERVL"; repLeft "-224"; repStart "2684"; ### MER4_4q26a ### chr4 rmsk gene 114548209 114553886 . - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0237"; model_cov "4741"; model_pct "71.9"; chr4 rmsk exon 114548209 114548680 2943 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0237"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 114548687 114551369 14964 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0237"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3815"; repStart "-2"; chr4 rmsk exon 114551367 114552255 3583 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0237"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "2737"; repStart "-2922"; chr4 rmsk exon 114552576 114553124 2997 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0237"; repClass "LTR"; repEnd "2354"; repFamily "ERV1"; repLeft "1763"; repStart "-4244"; chr4 rmsk exon 114553433 114553684 1518 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0237"; repClass "LTR"; repEnd "1020"; repFamily "ERV1"; repLeft "764"; repStart "-5578"; chr4 rmsk exon 114553707 114553886 949 - . gene_id "MER4_4q26a"; transcript_id "MER4_4q26a"; locus "MER4_4q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0237"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "512"; repStart "-5912"; ### HERVL_4q26b ### chr4 rmsk gene 114747480 114751775 . + . gene_id "HERVL_4q26b"; transcript_id "HERVL_4q26b"; locus "HERVL_4q26b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0409"; model_cov "3986"; model_pct "70.5"; chr4 rmsk exon 114747480 114747654 926 + . gene_id "HERVL_4q26b"; transcript_id "HERVL_4q26b"; locus "HERVL_4q26b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0409"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "288"; chr4 rmsk exon 114747656 114751620 30621 + . gene_id "HERVL_4q26b"; transcript_id "HERVL_4q26b"; locus "HERVL_4q26b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0409"; repClass "LTR"; repEnd "3988"; repFamily "ERVL"; repLeft "-1666"; repStart "2"; chr4 rmsk exon 114751622 114751775 1015 + . gene_id "HERVL_4q26b"; transcript_id "HERVL_4q26b"; locus "HERVL_4q26b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0409"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "279"; ### ERV316A3_4q26d ### chr4 rmsk gene 114856647 114859940 . + . gene_id "ERV316A3_4q26d"; transcript_id "ERV316A3_4q26d"; locus "ERV316A3_4q26d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0799"; model_cov "2623"; model_pct "50.2"; chr4 rmsk exon 114856647 114856947 858 + . gene_id "ERV316A3_4q26d"; transcript_id "ERV316A3_4q26d"; locus "ERV316A3_4q26d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0799"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "-2767"; repStart "2146"; chr4 rmsk exon 114856947 114859083 3065 + . gene_id "ERV316A3_4q26d"; transcript_id "ERV316A3_4q26d"; locus "ERV316A3_4q26d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0799"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-568"; repStart "2348"; chr4 rmsk exon 114859502 114859940 855 + . gene_id "ERV316A3_4q26d"; transcript_id "ERV316A3_4q26d"; locus "ERV316A3_4q26d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0799"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVL_4q26a ### chr4 rmsk gene 115013416 115016984 . + . gene_id "ERVL_4q26a"; transcript_id "ERVL_4q26a"; locus "ERVL_4q26a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0111"; model_cov "3545"; model_pct "61.6"; chr4 rmsk exon 115013416 115016984 17244 + . gene_id "ERVL_4q26a"; transcript_id "ERVL_4q26a"; locus "ERVL_4q26a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0111"; repClass "LTR"; repEnd "5419"; repFamily "ERVL"; repLeft "-338"; repStart "1874"; ### MER41_4q26 ### chr4 rmsk gene 115418746 115424932 . + . gene_id "MER41_4q26"; transcript_id "MER41_4q26"; locus "MER41_4q26"; category "internal"; intModel "MER41-int"; locid "MER41-int_0150"; model_cov "6761"; model_pct "100.0"; chr4 rmsk exon 115418746 115418907 287 + . gene_id "MER41_4q26"; transcript_id "MER41_4q26"; locus "MER41_4q26"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0150"; repClass "LTR"; repEnd "-886"; repFamily "ERV1"; repLeft "-6832"; repStart "-1110"; chr4 rmsk exon 115419047 115419320 643 + . gene_id "MER41_4q26"; transcript_id "MER41_4q26"; locus "MER41_4q26"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0150"; repClass "LTR"; repEnd "1183"; repFamily "ERV1"; repLeft "-4763"; repStart "913"; chr4 rmsk exon 115419470 115422421 13257 + . gene_id "MER41_4q26"; transcript_id "MER41_4q26"; locus "MER41_4q26"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0150"; repClass "LTR"; repEnd "3838"; repFamily "ERV1"; repLeft "-2108"; repStart "976"; chr4 rmsk exon 115422719 115424932 13257 + . gene_id "MER41_4q26"; transcript_id "MER41_4q26"; locus "MER41_4q26"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0150"; repClass "LTR"; repEnd "5881"; repFamily "ERV1"; repLeft "-65"; repStart "2476"; ### HERVL40_4q26b ### chr4 rmsk gene 115432460 115434009 . + . gene_id "HERVL40_4q26b"; transcript_id "HERVL40_4q26b"; locus "HERVL40_4q26b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0106"; model_cov "1149"; model_pct "20.8"; chr4 rmsk exon 115432460 115432557 262 + . gene_id "HERVL40_4q26b"; transcript_id "HERVL40_4q26b"; locus "HERVL40_4q26b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0106"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "403"; chr4 rmsk exon 115432810 115433439 1075 + . gene_id "HERVL40_4q26b"; transcript_id "HERVL40_4q26b"; locus "HERVL40_4q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0106"; repClass "LTR"; repEnd "1638"; repFamily "ERVL"; repLeft "-3892"; repStart "974"; chr4 rmsk exon 115433416 115433766 1029 + . gene_id "HERVL40_4q26b"; transcript_id "HERVL40_4q26b"; locus "HERVL40_4q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0106"; repClass "LTR"; repEnd "2395"; repFamily "ERVL"; repLeft "-3135"; repStart "2050"; chr4 rmsk exon 115433875 115434009 548 + . gene_id "HERVL40_4q26b"; transcript_id "HERVL40_4q26b"; locus "HERVL40_4q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0106"; repClass "LTR"; repEnd "2825"; repFamily "ERVL"; repLeft "-2705"; repStart "2685"; ### HERVL_4q26c ### chr4 rmsk gene 115458253 115460478 . - . gene_id "HERVL_4q26c"; transcript_id "HERVL_4q26c"; locus "HERVL_4q26c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0410"; model_cov "1510"; model_pct "26.7"; chr4 rmsk exon 115458253 115459245 7338 - . gene_id "HERVL_4q26c"; transcript_id "HERVL_4q26c"; locus "HERVL_4q26c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0410"; repClass "LTR"; repEnd "1961"; repFamily "ERVL"; repLeft "948"; repStart "-3693"; chr4 rmsk exon 115459438 115459935 3942 - . gene_id "HERVL_4q26c"; transcript_id "HERVL_4q26c"; locus "HERVL_4q26c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0410"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "1"; repStart "-5156"; chr4 rmsk exon 115459936 115459980 238 - . gene_id "HERVL_4q26c"; transcript_id "HERVL_4q26c"; locus "HERVL_4q26c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0410"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr4 rmsk exon 115460081 115460478 3062 - . gene_id "HERVL_4q26c"; transcript_id "HERVL_4q26c"; locus "HERVL_4q26c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0410"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; ### MER4_4q26b ### chr4 rmsk gene 115544075 115548514 . - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0239"; model_cov "3523"; model_pct "53.4"; chr4 rmsk exon 115544075 115544513 2718 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0239"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 115544515 115546367 15611 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0239"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4754"; repStart "0"; chr4 rmsk exon 115546675 115547564 15611 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0239"; repClass "LTR"; repEnd "4753"; repFamily "ERV1"; repLeft "3849"; repStart "-1845"; chr4 rmsk exon 115547591 115547942 1356 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0239"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "3319"; repStart "-2912"; chr4 rmsk exon 115547938 115548292 1775 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0239"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "865"; repStart "-5372"; chr4 rmsk exon 115548467 115548514 288 - . gene_id "MER4_4q26b"; transcript_id "MER4_4q26b"; locus "MER4_4q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0239"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "778"; repStart "-5773"; ### ERVLE_4q26a ### chr4 rmsk gene 115602186 115602750 . + . gene_id "ERVLE_4q26a"; transcript_id "ERVLE_4q26a"; locus "ERVLE_4q26a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1083"; model_cov "626"; model_pct "11.0"; chr4 rmsk exon 115602186 115602750 802 + . gene_id "ERVLE_4q26a"; transcript_id "ERVLE_4q26a"; locus "ERVLE_4q26a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1083"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-445"; repStart "4596"; ### ERVLB4_4q26d ### chr4 rmsk gene 115737601 115738418 . - . gene_id "ERVLB4_4q26d"; transcript_id "ERVLB4_4q26d"; locus "ERVLB4_4q26d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0501"; model_cov "597"; model_pct "10.4"; chr4 rmsk exon 115737601 115737848 289 - . gene_id "ERVLB4_4q26d"; transcript_id "ERVLB4_4q26d"; locus "ERVLB4_4q26d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0501"; repClass "LTR"; repEnd "3680"; repFamily "ERVL"; repLeft "3426"; repStart "-2034"; chr4 rmsk exon 115738112 115738418 602 - . gene_id "ERVLB4_4q26d"; transcript_id "ERVLB4_4q26d"; locus "ERVLB4_4q26d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0501"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "2289"; repStart "-3082"; ### ERVLB4_4q26e ### chr4 rmsk gene 115892491 115899516 . + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0502"; model_cov "5570"; model_pct "97.5"; chr4 rmsk exon 115892491 115892945 720 + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0502"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 115892946 115893411 26433 + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0502"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-5238"; repStart "1"; chr4 rmsk exon 115893711 115898769 26433 + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0502"; repClass "LTR"; repEnd "5572"; repFamily "ERVL"; repLeft "-142"; repStart "477"; chr4 rmsk exon 115899090 115899366 639 + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0502"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-52"; repStart "124"; chr4 rmsk exon 115899467 115899516 252 + . gene_id "ERVLB4_4q26e"; transcript_id "ERVLB4_4q26e"; locus "ERVLB4_4q26e"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0502"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "417"; ### ERV316A3_4q26e ### chr4 rmsk gene 115916164 115919178 . + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0800"; model_cov "1513"; model_pct "29.0"; chr4 rmsk exon 115916164 115916291 288 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-60"; repStart "289"; chr4 rmsk exon 115916597 115916658 288 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "403"; chr4 rmsk exon 115916662 115916943 456 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "2679"; repFamily "ERVL"; repLeft "-2547"; repStart "2388"; chr4 rmsk exon 115917255 115917566 486 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "-1461"; repStart "3440"; chr4 rmsk exon 115917622 115918359 763 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "4784"; repFamily "ERVL"; repLeft "-442"; repStart "4054"; chr4 rmsk exon 115918478 115918637 375 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "5134"; repFamily "ERVL"; repLeft "-92"; repStart "4967"; chr4 rmsk exon 115918792 115919178 819 + . gene_id "ERV316A3_4q26e"; transcript_id "ERV316A3_4q26e"; locus "ERV316A3_4q26e"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0800"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "-2"; repStart "83"; ### ERVLB4_4q26f ### chr4 rmsk gene 115944217 115946541 . + . gene_id "ERVLB4_4q26f"; transcript_id "ERVLB4_4q26f"; locus "ERVLB4_4q26f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0503"; model_cov "1784"; model_pct "31.2"; chr4 rmsk exon 115944217 115945980 10176 + . gene_id "ERVLB4_4q26f"; transcript_id "ERVLB4_4q26f"; locus "ERVLB4_4q26f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0503"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "3928"; chr4 rmsk exon 115945983 115946541 2218 + . gene_id "ERVLB4_4q26f"; transcript_id "ERVLB4_4q26f"; locus "ERVLB4_4q26f"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0503"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### HARLEQUIN_4q26 ### chr4 rmsk gene 115950380 115956525 . + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0064"; model_cov "5275"; model_pct "76.5"; chr4 rmsk exon 115950380 115950859 3848 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 115950860 115951238 2687 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr4 rmsk exon 115951234 115951877 4599 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "262"; chr4 rmsk exon 115951863 115952827 6661 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr4 rmsk exon 115952827 115953422 4814 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "3955"; repFamily "ERV1"; repLeft "-2941"; repStart "3352"; chr4 rmsk exon 115953408 115956049 17017 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "4246"; chr4 rmsk exon 115956050 115956525 3756 + . gene_id "HARLEQUIN_4q26"; transcript_id "HARLEQUIN_4q26"; locus "HARLEQUIN_4q26"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0064"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_4q26a ### chr4 rmsk gene 115975700 115981223 . - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0398"; model_cov "4908"; model_pct "63.6"; chr4 rmsk exon 115975700 115976106 2650 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 115976107 115976479 2251 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 115976478 115976694 1429 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 115976696 115977358 4395 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 115977361 115977854 3245 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 115977845 115977992 869 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 115977987 115980874 15810 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 115980877 115981223 2382 - . gene_id "HERVH_4q26a"; transcript_id "HERVH_4q26a"; locus "HERVH_4q26a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0398"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "102"; repStart "-2"; ### HERV3_4q26 ### chr4 rmsk gene 116014933 116020625 . + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0019"; model_cov "5144"; model_pct "61.0"; chr4 rmsk exon 116014933 116015313 1398 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "0"; repStart "294"; chr4 rmsk exon 116015314 116015670 1994 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "366"; repFamily "ERV1"; repLeft "-8060"; repStart "2"; chr4 rmsk exon 116015659 116016810 7170 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "-6987"; repStart "274"; chr4 rmsk exon 116016783 116019592 16786 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "6562"; repFamily "ERV1"; repLeft "-1864"; repStart "3467"; chr4 rmsk exon 116019576 116020093 3795 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "7906"; chr4 rmsk exon 116020212 116020625 1331 + . gene_id "HERV3_4q26"; transcript_id "HERV3_4q26"; locus "HERV3_4q26"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0019"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "0"; repStart "214"; ### ERVLE_4q26b ### chr4 rmsk gene 116025781 116027945 . - . gene_id "ERVLE_4q26b"; transcript_id "ERVLE_4q26b"; locus "ERVLE_4q26b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1086"; model_cov "1165"; model_pct "20.6"; chr4 rmsk exon 116025781 116025897 428 - . gene_id "ERVLE_4q26b"; transcript_id "ERVLE_4q26b"; locus "ERVLE_4q26b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1086"; repClass "LTR"; repEnd "4938"; repFamily "ERVL"; repLeft "4820"; repStart "-729"; chr4 rmsk exon 116025936 116026312 793 - . gene_id "ERVLE_4q26b"; transcript_id "ERVLE_4q26b"; locus "ERVLE_4q26b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1086"; repClass "LTR"; repEnd "4725"; repFamily "ERVL"; repLeft "4327"; repStart "-942"; chr4 rmsk exon 116026827 116027073 353 - . gene_id "ERVLE_4q26b"; transcript_id "ERVLE_4q26b"; locus "ERVLE_4q26b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1086"; repClass "LTR"; repEnd "4281"; repFamily "ERVL"; repLeft "4017"; repStart "-1386"; chr4 rmsk exon 116027580 116027945 786 - . gene_id "ERVLE_4q26b"; transcript_id "ERVLE_4q26b"; locus "ERVLE_4q26b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1086"; repClass "LTR"; repEnd "3372"; repFamily "ERVL"; repLeft "2987"; repStart "-2295"; ### ERV316A3_4q26f ### chr4 rmsk gene 116156233 116158418 . - . gene_id "ERV316A3_4q26f"; transcript_id "ERV316A3_4q26f"; locus "ERV316A3_4q26f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0801"; model_cov "895"; model_pct "17.1"; chr4 rmsk exon 116156233 116156275 1766 - . gene_id "ERV316A3_4q26f"; transcript_id "ERV316A3_4q26f"; locus "ERV316A3_4q26f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0801"; repClass "LTR"; repEnd "1436"; repFamily "ERVL"; repLeft "1401"; repStart "-3790"; chr4 rmsk exon 116156909 116157791 1766 - . gene_id "ERV316A3_4q26f"; transcript_id "ERV316A3_4q26f"; locus "ERV316A3_4q26f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0801"; repClass "LTR"; repEnd "1400"; repFamily "ERVL"; repLeft "540"; repStart "-3826"; chr4 rmsk exon 116158251 116158418 555 - . gene_id "ERV316A3_4q26f"; transcript_id "ERV316A3_4q26f"; locus "ERV316A3_4q26f"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0801"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "258"; repStart "0"; ### ERVLB4_4q26g ### chr4 rmsk gene 116214013 116216680 . - . gene_id "ERVLB4_4q26g"; transcript_id "ERVLB4_4q26g"; locus "ERVLB4_4q26g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0506"; model_cov "1347"; model_pct "23.6"; chr4 rmsk exon 116214013 116214437 1623 - . gene_id "ERVLB4_4q26g"; transcript_id "ERVLB4_4q26g"; locus "ERVLB4_4q26g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0506"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 116215030 116215475 640 - . gene_id "ERVLB4_4q26g"; transcript_id "ERVLB4_4q26g"; locus "ERVLB4_4q26g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0506"; repClass "LTR"; repEnd "3804"; repFamily "ERVL"; repLeft "3344"; repStart "-1910"; chr4 rmsk exon 116215849 116216427 959 - . gene_id "ERVLB4_4q26g"; transcript_id "ERVLB4_4q26g"; locus "ERVLB4_4q26g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0506"; repClass "LTR"; repEnd "2330"; repFamily "ERVL"; repLeft "1597"; repStart "-3384"; chr4 rmsk exon 116216527 116216680 362 - . gene_id "ERVLB4_4q26g"; transcript_id "ERVLB4_4q26g"; locus "ERVLB4_4q26g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0506"; repClass "LTR"; repEnd "1632"; repFamily "ERVL"; repLeft "1478"; repStart "-4082"; ### HERVL40_4q26c ### chr4 rmsk gene 116242723 116243576 . - . gene_id "HERVL40_4q26c"; transcript_id "HERVL40_4q26c"; locus "HERVL40_4q26c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0108"; model_cov "876"; model_pct "15.8"; chr4 rmsk exon 116242723 116243576 2032 - . gene_id "HERVL40_4q26c"; transcript_id "HERVL40_4q26c"; locus "HERVL40_4q26c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0108"; repClass "LTR"; repEnd "4188"; repFamily "ERVL"; repLeft "3312"; repStart "-1342"; ### ERVLB4_4q26h ### chr4 rmsk gene 116259026 116261972 . + . gene_id "ERVLB4_4q26h"; transcript_id "ERVLB4_4q26h"; locus "ERVLB4_4q26h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0507"; model_cov "1567"; model_pct "27.4"; chr4 rmsk exon 116259026 116259167 5425 + . gene_id "ERVLB4_4q26h"; transcript_id "ERVLB4_4q26h"; locus "ERVLB4_4q26h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0507"; repClass "LTR"; repEnd "1015"; repFamily "ERVL"; repLeft "-4699"; repStart "878"; chr4 rmsk exon 116259483 116260434 5425 + . gene_id "ERVLB4_4q26h"; transcript_id "ERVLB4_4q26h"; locus "ERVLB4_4q26h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0507"; repClass "LTR"; repEnd "2004"; repFamily "ERVL"; repLeft "-3710"; repStart "1016"; chr4 rmsk exon 116261534 116261972 2472 + . gene_id "ERVLB4_4q26h"; transcript_id "ERVLB4_4q26h"; locus "ERVLB4_4q26h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0507"; repClass "LTR"; repEnd "2456"; repFamily "ERVL"; repLeft "-3258"; repStart "2014"; ### HERVL_4q26d ### chr4 rmsk gene 116262653 116266856 . + . gene_id "HERVL_4q26d"; transcript_id "HERVL_4q26d"; locus "HERVL_4q26d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0411"; model_cov "3266"; model_pct "57.8"; chr4 rmsk exon 116262653 116263131 2797 + . gene_id "HERVL_4q26d"; transcript_id "HERVL_4q26d"; locus "HERVL_4q26d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0411"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 116263132 116265105 14237 + . gene_id "HERVL_4q26d"; transcript_id "HERVL_4q26d"; locus "HERVL_4q26d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0411"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3687"; repStart "1"; chr4 rmsk exon 116265090 116266389 9771 + . gene_id "HERVL_4q26d"; transcript_id "HERVL_4q26d"; locus "HERVL_4q26d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0411"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4354"; chr4 rmsk exon 116266392 116266856 2534 + . gene_id "HERVL_4q26d"; transcript_id "HERVL_4q26d"; locus "HERVL_4q26d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0411"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HERVL18_4q26 ### chr4 rmsk gene 116357840 116362242 . + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0049"; model_cov "3711"; model_pct "61.4"; chr4 rmsk exon 116357840 116358188 2204 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 116358207 116358505 1531 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "286"; repFamily "ERVL"; repLeft "-5761"; repStart "1"; chr4 rmsk exon 116358509 116358840 1749 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "968"; repFamily "ERVL"; repLeft "-5079"; repStart "634"; chr4 rmsk exon 116358832 116359050 1181 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "1399"; chr4 rmsk exon 116359083 116359408 1290 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "2484"; repFamily "ERVL"; repLeft "-3563"; repStart "2119"; chr4 rmsk exon 116359378 116360235 5234 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr4 rmsk exon 116360238 116361865 9672 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4394"; chr4 rmsk exon 116361867 116362242 1937 + . gene_id "HERVL18_4q26"; transcript_id "HERVL18_4q26"; locus "HERVL18_4q26"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0049"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_4q26i ### chr4 rmsk gene 116389672 116391469 . + . gene_id "ERVLB4_4q26i"; transcript_id "ERVLB4_4q26i"; locus "ERVLB4_4q26i"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0508"; model_cov "1181"; model_pct "20.7"; chr4 rmsk exon 116389672 116390127 1457 + . gene_id "ERVLB4_4q26i"; transcript_id "ERVLB4_4q26i"; locus "ERVLB4_4q26i"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0508"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr4 rmsk exon 116390233 116390933 3026 + . gene_id "ERVLB4_4q26i"; transcript_id "ERVLB4_4q26i"; locus "ERVLB4_4q26i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0508"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "-4994"; repStart "17"; chr4 rmsk exon 116390991 116391469 2410 + . gene_id "ERVLB4_4q26i"; transcript_id "ERVLB4_4q26i"; locus "ERVLB4_4q26i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0508"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "-4578"; repStart "658"; ### HERVFRD_4q26 ### chr4 rmsk gene 116514327 116520774 . - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0059"; model_cov "3698"; model_pct "51.3"; chr4 rmsk exon 116514327 116514454 886 - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0059"; repClass "LTR"; repEnd "6967"; repFamily "ERV1"; repLeft "6840"; repStart "-238"; chr4 rmsk exon 116514722 116516445 7609 - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0059"; repClass "LTR"; repEnd "4538"; repFamily "ERV1"; repLeft "2788"; repStart "-2667"; chr4 rmsk exon 116516442 116517320 3367 - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0059"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "821"; repStart "-5355"; chr4 rmsk exon 116519277 116520086 4526 - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0059"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "33"; repStart "-6380"; chr4 rmsk exon 116520087 116520774 3652 - . gene_id "HERVFRD_4q26"; transcript_id "HERVFRD_4q26"; locus "HERVFRD_4q26"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0059"; repClass "LTR"; repEnd "724"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### ERVLE_4q26c ### chr4 rmsk gene 116571629 116576617 . - . gene_id "ERVLE_4q26c"; transcript_id "ERVLE_4q26c"; locus "ERVLE_4q26c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1089"; model_cov "2493"; model_pct "44.0"; chr4 rmsk exon 116571629 116572571 2278 - . gene_id "ERVLE_4q26c"; transcript_id "ERVLE_4q26c"; locus "ERVLE_4q26c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1089"; repClass "LTR"; repEnd "3587"; repFamily "ERVL"; repLeft "2604"; repStart "-2080"; chr4 rmsk exon 116574843 116575235 2278 - . gene_id "ERVLE_4q26c"; transcript_id "ERVLE_4q26c"; locus "ERVLE_4q26c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1089"; repClass "LTR"; repEnd "2603"; repFamily "ERVL"; repLeft "2177"; repStart "-3064"; chr4 rmsk exon 116575224 116575944 1935 - . gene_id "ERVLE_4q26c"; transcript_id "ERVLE_4q26c"; locus "ERVLE_4q26c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1089"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "1263"; repStart "-3661"; chr4 rmsk exon 116576368 116576617 753 - . gene_id "ERVLE_4q26c"; transcript_id "ERVLE_4q26c"; locus "ERVLE_4q26c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1089"; repClass "LTR"; repEnd "1039"; repFamily "ERVL"; repLeft "698"; repStart "-4628"; ### MER61_4q26b ### chr4 rmsk gene 116663856 116668575 . + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0126"; model_cov "4532"; model_pct "86.9"; chr4 rmsk exon 116663856 116664193 1621 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0126"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 116664195 116665563 13486 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "1972"; repFamily "ERV1"; repLeft "-3245"; repStart "1"; chr4 rmsk exon 116665973 116667242 13486 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "3315"; repFamily "ERV1"; repLeft "-1902"; repStart "1973"; chr4 rmsk exon 116667329 116667466 13486 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "3463"; repFamily "ERV1"; repLeft "-1754"; repStart "3316"; chr4 rmsk exon 116667460 116668438 4271 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "5176"; repFamily "ERV1"; repLeft "-41"; repStart "4155"; chr4 rmsk exon 116668474 116668494 251 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "5181"; repFamily "ERV1"; repLeft "-36"; repStart "5161"; chr4 rmsk exon 116668544 116668575 251 + . gene_id "MER61_4q26b"; transcript_id "MER61_4q26b"; locus "MER61_4q26b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0126"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "-4"; repStart "5182"; ### ERV316A3_4q26g ### chr4 rmsk gene 116702896 116704058 . - . gene_id "ERV316A3_4q26g"; transcript_id "ERV316A3_4q26g"; locus "ERV316A3_4q26g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0802"; model_cov "1150"; model_pct "22.0"; chr4 rmsk exon 116702896 116703669 1506 - . gene_id "ERV316A3_4q26g"; transcript_id "ERV316A3_4q26g"; locus "ERV316A3_4q26g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0802"; repClass "LTR"; repEnd "1654"; repFamily "ERVL"; repLeft "876"; repStart "-3572"; chr4 rmsk exon 116703696 116704058 892 - . gene_id "ERV316A3_4q26g"; transcript_id "ERV316A3_4q26g"; locus "ERV316A3_4q26g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0802"; repClass "LTR"; repEnd "807"; repFamily "ERVL"; repLeft "435"; repStart "-4419"; ### HERVL40_4q26d ### chr4 rmsk gene 116738027 116741782 . - . gene_id "HERVL40_4q26d"; transcript_id "HERVL40_4q26d"; locus "HERVL40_4q26d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0109"; model_cov "2100"; model_pct "38.0"; chr4 rmsk exon 116738027 116738501 989 - . gene_id "HERVL40_4q26d"; transcript_id "HERVL40_4q26d"; locus "HERVL40_4q26d"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0109"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 116738512 116738845 847 - . gene_id "HERVL40_4q26d"; transcript_id "HERVL40_4q26d"; locus "HERVL40_4q26d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0109"; repClass "LTR"; repEnd "5520"; repFamily "ERVL"; repLeft "5246"; repStart "-10"; chr4 rmsk exon 116739979 116741526 2256 - . gene_id "HERVL40_4q26d"; transcript_id "HERVL40_4q26d"; locus "HERVL40_4q26d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0109"; repClass "LTR"; repEnd "4194"; repFamily "ERVL"; repLeft "2569"; repStart "-1336"; chr4 rmsk exon 116741574 116741782 569 - . gene_id "HERVL40_4q26d"; transcript_id "HERVL40_4q26d"; locus "HERVL40_4q26d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0109"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "1408"; repStart "-3921"; ### ERV316A3_4q26h ### chr4 rmsk gene 116927214 116927742 . + . gene_id "ERV316A3_4q26h"; transcript_id "ERV316A3_4q26h"; locus "ERV316A3_4q26h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0804"; model_cov "526"; model_pct "10.1"; chr4 rmsk exon 116927214 116927742 1174 + . gene_id "ERV316A3_4q26h"; transcript_id "ERV316A3_4q26h"; locus "ERV316A3_4q26h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0804"; repClass "LTR"; repEnd "2951"; repFamily "ERVL"; repLeft "-2275"; repStart "2425"; ### HERVL_4q26e ### chr4 rmsk gene 117146073 117147715 . + . gene_id "HERVL_4q26e"; transcript_id "HERVL_4q26e"; locus "HERVL_4q26e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0413"; model_cov "1098"; model_pct "19.4"; chr4 rmsk exon 117146073 117147144 7146 + . gene_id "HERVL_4q26e"; transcript_id "HERVL_4q26e"; locus "HERVL_4q26e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0413"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4556"; chr4 rmsk exon 117147146 117147715 1695 + . gene_id "HERVL_4q26e"; transcript_id "HERVL_4q26e"; locus "HERVL_4q26e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0413"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### HERVH_4q26b ### chr4 rmsk gene 117252107 117257788 . + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0399"; model_cov "4911"; model_pct "63.7"; chr4 rmsk exon 117252107 117252508 2506 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 117252511 117255495 19974 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 117255490 117255634 772 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 117255625 117256127 3339 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 117256130 117256792 4387 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "5150"; repFamily "ERV1"; repLeft "-2563"; repStart "4488"; chr4 rmsk exon 117256791 117257009 1337 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5598"; chr4 rmsk exon 117257008 117257386 2255 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 117257387 117257788 2497 + . gene_id "HERVH_4q26b"; transcript_id "HERVH_4q26b"; locus "HERVH_4q26b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0399"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_4q26d ### chr4 rmsk gene 117568863 117571422 . - . gene_id "ERVLE_4q26d"; transcript_id "ERVLE_4q26d"; locus "ERVLE_4q26d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1093"; model_cov "2387"; model_pct "42.1"; chr4 rmsk exon 117568863 117569091 566 - . gene_id "ERVLE_4q26d"; transcript_id "ERVLE_4q26d"; locus "ERVLE_4q26d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1093"; repClass "LTR"; repEnd "2838"; repFamily "ERVL"; repLeft "2592"; repStart "-2829"; chr4 rmsk exon 117569189 117571019 1000 - . gene_id "ERVLE_4q26d"; transcript_id "ERVLE_4q26d"; locus "ERVLE_4q26d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1093"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "594"; repStart "-3209"; chr4 rmsk exon 117571163 117571422 443 - . gene_id "ERVLE_4q26d"; transcript_id "ERVLE_4q26d"; locus "ERVLE_4q26d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1093"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "118"; repStart "-5272"; ### HERVH_4q26c ### chr4 rmsk gene 117600122 117603729 . - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0400"; model_cov "3186"; model_pct "41.3"; chr4 rmsk exon 117600122 117600568 3098 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 117600569 117600944 2260 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 117600945 117601149 1448 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr4 rmsk exon 117601180 117601794 3117 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 117601797 117602650 5729 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4 rmsk exon 117602645 117603729 7575 - . gene_id "HERVH_4q26c"; transcript_id "HERVH_4q26c"; locus "HERVH_4q26c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0400"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1908"; repStart "-4726"; ### ERV316A3_4q26i ### chr4 rmsk gene 117700024 117702020 . + . gene_id "ERV316A3_4q26i"; transcript_id "ERV316A3_4q26i"; locus "ERV316A3_4q26i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0806"; model_cov "2014"; model_pct "38.5"; chr4 rmsk exon 117700024 117701744 3477 + . gene_id "ERV316A3_4q26i"; transcript_id "ERV316A3_4q26i"; locus "ERV316A3_4q26i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0806"; repClass "LTR"; repEnd "4145"; repFamily "ERVL"; repLeft "-1081"; repStart "2401"; chr4 rmsk exon 117701837 117702020 445 + . gene_id "ERV316A3_4q26i"; transcript_id "ERV316A3_4q26i"; locus "ERV316A3_4q26i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0806"; repClass "LTR"; repEnd "4410"; repFamily "ERVL"; repLeft "-816"; repStart "4140"; ### HUERSP2_4q26 ### chr4 rmsk gene 117831374 117836043 . - . gene_id "HUERSP2_4q26"; transcript_id "HUERSP2_4q26"; locus "HUERSP2_4q26"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0044"; model_cov "3020"; model_pct "97.8"; chr4 rmsk exon 117831374 117832160 5021 - . gene_id "HUERSP2_4q26"; transcript_id "HUERSP2_4q26"; locus "HUERSP2_4q26"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0044"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 117832161 117832531 7405 - . gene_id "HUERSP2_4q26"; transcript_id "HUERSP2_4q26"; locus "HUERSP2_4q26"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0044"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2712"; repStart "0"; chr4 rmsk exon 117832832 117835115 7428 - . gene_id "HUERSP2_4q26"; transcript_id "HUERSP2_4q26"; locus "HUERSP2_4q26"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0044"; repClass "LTR"; repEnd "-1145"; repFamily "ERV1"; repLeft "-3789"; repStart "-4233"; chr4 rmsk exon 117835267 117836043 4968 - . gene_id "HUERSP2_4q26"; transcript_id "HUERSP2_4q26"; locus "HUERSP2_4q26"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0044"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_4q26b ### chr4 rmsk gene 117897885 117898825 . - . gene_id "ERVL_4q26b"; transcript_id "ERVL_4q26b"; locus "ERVL_4q26b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0113"; model_cov "966"; model_pct "16.8"; chr4 rmsk exon 117897885 117898825 1371 - . gene_id "ERVL_4q26b"; transcript_id "ERVL_4q26b"; locus "ERVL_4q26b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0113"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "4415"; repStart "-376"; ### ERVLE_4q26e ### chr4 rmsk gene 117898903 117900122 . + . gene_id "ERVLE_4q26e"; transcript_id "ERVLE_4q26e"; locus "ERVLE_4q26e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1094"; model_cov "1272"; model_pct "22.4"; chr4 rmsk exon 117898903 117900122 1234 + . gene_id "ERVLE_4q26e"; transcript_id "ERVLE_4q26e"; locus "ERVLE_4q26e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1094"; repClass "LTR"; repEnd "5266"; repFamily "ERVL"; repLeft "-401"; repStart "3994"; ### ERV316A3_4q26j ### chr4 rmsk gene 117955978 117956895 . + . gene_id "ERV316A3_4q26j"; transcript_id "ERV316A3_4q26j"; locus "ERV316A3_4q26j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0808"; model_cov "941"; model_pct "18.0"; chr4 rmsk exon 117955978 117956895 976 + . gene_id "ERV316A3_4q26j"; transcript_id "ERV316A3_4q26j"; locus "ERV316A3_4q26j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0808"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "-359"; repStart "3926"; ### MER34B_4q26 ### chr4 rmsk gene 118181711 118182344 . - . gene_id "MER34B_4q26"; transcript_id "MER34B_4q26"; locus "MER34B_4q26"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0089"; model_cov "597"; model_pct "11.1"; chr4 rmsk exon 118181711 118181886 824 - . gene_id "MER34B_4q26"; transcript_id "MER34B_4q26"; locus "MER34B_4q26"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0089"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "1617"; repStart "-3562"; chr4 rmsk exon 118181901 118182344 1723 - . gene_id "MER34B_4q26"; transcript_id "MER34B_4q26"; locus "MER34B_4q26"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0089"; repClass "LTR"; repEnd "659"; repFamily "ERV1"; repLeft "239"; repStart "-4697"; ### ERV316A3_4q26k ### chr4 rmsk gene 119475662 119476625 . - . gene_id "ERV316A3_4q26k"; transcript_id "ERV316A3_4q26k"; locus "ERV316A3_4q26k"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0809"; model_cov "1041"; model_pct "19.9"; chr4 rmsk exon 119475662 119476625 2109 - . gene_id "ERV316A3_4q26k"; transcript_id "ERV316A3_4q26k"; locus "ERV316A3_4q26k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0809"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "3911"; repStart "-274"; ### ERVLE_4q26f ### chr4 rmsk gene 119817623 119819237 . - . gene_id "ERVLE_4q26f"; transcript_id "ERVLE_4q26f"; locus "ERVLE_4q26f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1097"; model_cov "1503"; model_pct "26.5"; chr4 rmsk exon 119817623 119818594 1626 - . gene_id "ERVLE_4q26f"; transcript_id "ERVLE_4q26f"; locus "ERVLE_4q26f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1097"; repClass "LTR"; repEnd "3640"; repFamily "ERVL"; repLeft "2629"; repStart "-2027"; chr4 rmsk exon 119818735 119819237 1541 - . gene_id "ERVLE_4q26f"; transcript_id "ERVLE_4q26f"; locus "ERVLE_4q26f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1097"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "1963"; repStart "-3212"; ### HERVH_4q27 ### chr4 rmsk gene 119993664 119999666 . + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0401"; model_cov "5064"; model_pct "65.7"; chr4 rmsk exon 119993664 119994116 3478 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 119994119 119997469 19536 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr4 rmsk exon 119997460 119997969 3218 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3492"; chr4 rmsk exon 119997964 119998626 4375 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 119998628 119998841 1409 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "-1896"; repStart "5600"; chr4 rmsk exon 119998844 119999220 2525 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 119999221 119999666 3403 + . gene_id "HERVH_4q27"; transcript_id "HERVH_4q27"; locus "HERVH_4q27"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0401"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_4q27a ### chr4 rmsk gene 120287158 120289178 . + . gene_id "ERVLE_4q27a"; transcript_id "ERVLE_4q27a"; locus "ERVLE_4q27a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1098"; model_cov "1641"; model_pct "29.0"; chr4 rmsk exon 120287158 120288243 1419 + . gene_id "ERVLE_4q27a"; transcript_id "ERVLE_4q27a"; locus "ERVLE_4q27a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1098"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "-4525"; repStart "8"; chr4 rmsk exon 120288683 120289178 1047 + . gene_id "ERVLE_4q27a"; transcript_id "ERVLE_4q27a"; locus "ERVLE_4q27a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1098"; repClass "LTR"; repEnd "1721"; repFamily "ERVL"; repLeft "-3946"; repStart "1214"; ### ERV316A3_4q27a ### chr4 rmsk gene 120641554 120643166 . - . gene_id "ERV316A3_4q27a"; transcript_id "ERV316A3_4q27a"; locus "ERV316A3_4q27a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0810"; model_cov "1052"; model_pct "20.1"; chr4 rmsk exon 120641554 120641981 1177 - . gene_id "ERV316A3_4q27a"; transcript_id "ERV316A3_4q27a"; locus "ERV316A3_4q27a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0810"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "9"; repStart "-21"; chr4 rmsk exon 120642119 120643166 2059 - . gene_id "ERV316A3_4q27a"; transcript_id "ERV316A3_4q27a"; locus "ERV316A3_4q27a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0810"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4032"; repStart "-142"; ### ERV316A3_4q27b ### chr4 rmsk gene 120648495 120649109 . - . gene_id "ERV316A3_4q27b"; transcript_id "ERV316A3_4q27b"; locus "ERV316A3_4q27b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0811"; model_cov "640"; model_pct "12.2"; chr4 rmsk exon 120648495 120649109 1342 - . gene_id "ERV316A3_4q27b"; transcript_id "ERV316A3_4q27b"; locus "ERV316A3_4q27b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0811"; repClass "LTR"; repEnd "4043"; repFamily "ERVL"; repLeft "3403"; repStart "-1183"; ### MER34B_4q27 ### chr4 rmsk gene 120929591 120930385 . - . gene_id "MER34B_4q27"; transcript_id "MER34B_4q27"; locus "MER34B_4q27"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0090"; model_cov "658"; model_pct "12.3"; chr4 rmsk exon 120929591 120929978 758 - . gene_id "MER34B_4q27"; transcript_id "MER34B_4q27"; locus "MER34B_4q27"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0090"; repClass "LTR"; repEnd "681"; repFamily "ERV1"; repLeft "402"; repStart "-4675"; chr4 rmsk exon 120930004 120930385 1137 - . gene_id "MER34B_4q27"; transcript_id "MER34B_4q27"; locus "MER34B_4q27"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0090"; repClass "LTR"; repEnd "420"; repFamily "ERV1"; repLeft "41"; repStart "-4936"; ### ERVLE_4q27b ### chr4 rmsk gene 120994881 120995451 . + . gene_id "ERVLE_4q27b"; transcript_id "ERVLE_4q27b"; locus "ERVLE_4q27b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1099"; model_cov "619"; model_pct "10.9"; chr4 rmsk exon 120994881 120995451 1421 + . gene_id "ERVLE_4q27b"; transcript_id "ERVLE_4q27b"; locus "ERVLE_4q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1099"; repClass "LTR"; repEnd "2478"; repFamily "ERVL"; repLeft "-3189"; repStart "1859"; ### MER61_4q27 ### chr4 rmsk gene 121436615 121437197 . + . gene_id "MER61_4q27"; transcript_id "MER61_4q27"; locus "MER61_4q27"; category "internal"; intModel "MER61-int"; locid "MER61-int_0127"; model_cov "585"; model_pct "11.2"; chr4 rmsk exon 121436615 121437197 4222 + . gene_id "MER61_4q27"; transcript_id "MER61_4q27"; locus "MER61_4q27"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0127"; repClass "LTR"; repEnd "4630"; repFamily "ERV1"; repLeft "-587"; repStart "4045"; ### HERVL_4q27 ### chr4 rmsk gene 121512501 121514294 . - . gene_id "HERVL_4q27"; transcript_id "HERVL_4q27"; locus "HERVL_4q27"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0414"; model_cov "1334"; model_pct "23.6"; chr4 rmsk exon 121512501 121512540 3057 - . gene_id "HERVL_4q27"; transcript_id "HERVL_4q27"; locus "HERVL_4q27"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0414"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "394"; repStart "0"; chr4 rmsk exon 121512587 121512965 3057 - . gene_id "HERVL_4q27"; transcript_id "HERVL_4q27"; locus "HERVL_4q27"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0414"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "4"; repStart "-51"; chr4 rmsk exon 121512968 121514294 10554 - . gene_id "HERVL_4q27"; transcript_id "HERVL_4q27"; locus "HERVL_4q27"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0414"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4320"; repStart "0"; ### ERVLE_4q27c ### chr4 rmsk gene 121551275 121553535 . - . gene_id "ERVLE_4q27c"; transcript_id "ERVLE_4q27c"; locus "ERVLE_4q27c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1102"; model_cov "2323"; model_pct "41.0"; chr4 rmsk exon 121551275 121553535 5108 - . gene_id "ERVLE_4q27c"; transcript_id "ERVLE_4q27c"; locus "ERVLE_4q27c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1102"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "1613"; repStart "-1731"; ### ERVLE_4q27d ### chr4 rmsk gene 121630820 121631675 . - . gene_id "ERVLE_4q27d"; transcript_id "ERVLE_4q27d"; locus "ERVLE_4q27d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1103"; model_cov "857"; model_pct "15.1"; chr4 rmsk exon 121630820 121631675 2761 - . gene_id "ERVLE_4q27d"; transcript_id "ERVLE_4q27d"; locus "ERVLE_4q27d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1103"; repClass "LTR"; repEnd "2626"; repFamily "ERVL"; repLeft "1769"; repStart "-3041"; ### ERV316A3_4q27c ### chr4 rmsk gene 122118840 122120793 . + . gene_id "ERV316A3_4q27c"; transcript_id "ERV316A3_4q27c"; locus "ERV316A3_4q27c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0812"; model_cov "2065"; model_pct "39.5"; chr4 rmsk exon 122118840 122120589 4461 + . gene_id "ERV316A3_4q27c"; transcript_id "ERV316A3_4q27c"; locus "ERV316A3_4q27c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0812"; repClass "LTR"; repEnd "3564"; repFamily "ERVL"; repLeft "-1662"; repStart "1711"; chr4 rmsk exon 122120593 122120793 1049 + . gene_id "ERV316A3_4q27c"; transcript_id "ERV316A3_4q27c"; locus "ERV316A3_4q27c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0812"; repClass "LTR"; repEnd "3913"; repFamily "ERVL"; repLeft "-1313"; repStart "3701"; ### HUERSP1_4q27 ### chr4 rmsk gene 122483029 122486436 . - . gene_id "HUERSP1_4q27"; transcript_id "HUERSP1_4q27"; locus "HUERSP1_4q27"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0064"; model_cov "3690"; model_pct "58.9"; chr4 rmsk exon 122483029 122483748 4481 - . gene_id "HUERSP1_4q27"; transcript_id "HUERSP1_4q27"; locus "HUERSP1_4q27"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0064"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 122483750 122486436 7964 - . gene_id "HUERSP1_4q27"; transcript_id "HUERSP1_4q27"; locus "HUERSP1_4q27"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0064"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "2572"; repStart "-1"; ### ERVLB4_4q27 ### chr4 rmsk gene 122528755 122535914 . - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0511"; model_cov "5553"; model_pct "97.2"; chr4 rmsk exon 122528755 122529216 2163 - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0511"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-43"; chr4 rmsk exon 122529217 122531141 10682 - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0511"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3772"; repStart "0"; chr4 rmsk exon 122531732 122533403 5209 - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0511"; repClass "LTR"; repEnd "3753"; repFamily "ERVL"; repLeft "1896"; repStart "-1961"; chr4 rmsk exon 122533695 122535423 9595 - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0511"; repClass "LTR"; repEnd "1755"; repFamily "ERVL"; repLeft "1"; repStart "-3959"; chr4 rmsk exon 122535424 122535914 2010 - . gene_id "ERVLB4_4q27"; transcript_id "ERVLB4_4q27"; locus "ERVLB4_4q27"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0511"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVL40_4q27 ### chr4 rmsk gene 122744167 122746743 . - . gene_id "HERVL40_4q27"; transcript_id "HERVL40_4q27"; locus "HERVL40_4q27"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0110"; model_cov "1104"; model_pct "20.0"; chr4 rmsk exon 122744167 122744602 1568 - . gene_id "HERVL40_4q27"; transcript_id "HERVL40_4q27"; locus "HERVL40_4q27"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0110"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr4 rmsk exon 122744639 122745307 2655 - . gene_id "HERVL40_4q27"; transcript_id "HERVL40_4q27"; locus "HERVL40_4q27"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0110"; repClass "LTR"; repEnd "5492"; repFamily "ERVL"; repLeft "4821"; repStart "-38"; chr4 rmsk exon 122745307 122745566 779 - . gene_id "HERVL40_4q27"; transcript_id "HERVL40_4q27"; locus "HERVL40_4q27"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0110"; repClass "LTR"; repEnd "2395"; repFamily "ERVL"; repLeft "2136"; repStart "-3135"; chr4 rmsk exon 122746595 122746743 525 - . gene_id "HERVL40_4q27"; transcript_id "HERVL40_4q27"; locus "HERVL40_4q27"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0110"; repClass "LTR"; repEnd "1117"; repFamily "ERVL"; repLeft "943"; repStart "-4413"; ### HERVL32_4q28.1a ### chr4 rmsk gene 122948559 122950340 . - . gene_id "HERVL32_4q28.1a"; transcript_id "HERVL32_4q28.1a"; locus "HERVL32_4q28.1a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0012"; model_cov "344"; model_pct "10.1"; chr4 rmsk exon 122948559 122948792 1382 - . gene_id "HERVL32_4q28.1a"; transcript_id "HERVL32_4q28.1a"; locus "HERVL32_4q28.1a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0012"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "222"; repStart "0"; chr4 rmsk exon 122948796 122948830 236 - . gene_id "HERVL32_4q28.1a"; transcript_id "HERVL32_4q28.1a"; locus "HERVL32_4q28.1a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0012"; repClass "LTR"; repEnd "35"; repFamily "ERVL"; repLeft "1"; repStart "-422"; chr4 rmsk exon 122948839 122949029 795 - . gene_id "HERVL32_4q28.1a"; transcript_id "HERVL32_4q28.1a"; locus "HERVL32_4q28.1a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0012"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "3217"; repStart "-6"; chr4 rmsk exon 122950193 122950340 268 - . gene_id "HERVL32_4q28.1a"; transcript_id "HERVL32_4q28.1a"; locus "HERVL32_4q28.1a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0012"; repClass "LTR"; repEnd "2483"; repFamily "ERVL"; repLeft "2334"; repStart "-935"; ### HERVL32_4q28.1b ### chr4 rmsk gene 122951877 122955311 . - . gene_id "HERVL32_4q28.1b"; transcript_id "HERVL32_4q28.1b"; locus "HERVL32_4q28.1b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0013"; model_cov "3206"; model_pct "93.8"; chr4 rmsk exon 122951877 122955031 10026 - . gene_id "HERVL32_4q28.1b"; transcript_id "HERVL32_4q28.1b"; locus "HERVL32_4q28.1b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0013"; repClass "LTR"; repEnd "3213"; repFamily "ERVL"; repLeft "7"; repStart "-205"; chr4 rmsk exon 122955039 122955276 1239 - . gene_id "HERVL32_4q28.1b"; transcript_id "HERVL32_4q28.1b"; locus "HERVL32_4q28.1b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0013"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "218"; repStart "0"; chr4 rmsk exon 122955277 122955311 237 - . gene_id "HERVL32_4q28.1b"; transcript_id "HERVL32_4q28.1b"; locus "HERVL32_4q28.1b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0013"; repClass "LTR"; repEnd "35"; repFamily "ERVL"; repLeft "1"; repStart "-422"; ### HERVH_4q28.1a ### chr4 rmsk gene 123011467 123013355 . - . gene_id "HERVH_4q28.1a"; transcript_id "HERVH_4q28.1a"; locus "HERVH_4q28.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0402"; model_cov "1363"; model_pct "17.7"; chr4 rmsk exon 123011467 123011501 246 - . gene_id "HERVH_4q28.1a"; transcript_id "HERVH_4q28.1a"; locus "HERVH_4q28.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0402"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "438"; repStart "0"; chr4 rmsk exon 123011503 123012220 2385 - . gene_id "HERVH_4q28.1a"; transcript_id "HERVH_4q28.1a"; locus "HERVH_4q28.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0402"; repClass "LTR"; repEnd "1138"; repFamily "ERV1"; repLeft "460"; repStart "-6575"; chr4 rmsk exon 123012257 123012948 2884 - . gene_id "HERVH_4q28.1a"; transcript_id "HERVH_4q28.1a"; locus "HERVH_4q28.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0402"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-7027"; chr4 rmsk exon 123012951 123013355 2576 - . gene_id "HERVH_4q28.1a"; transcript_id "HERVH_4q28.1a"; locus "HERVH_4q28.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0402"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4q28.1a ### chr4 rmsk gene 123494814 123496826 . + . gene_id "ERV316A3_4q28.1a"; transcript_id "ERV316A3_4q28.1a"; locus "ERV316A3_4q28.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0813"; model_cov "1168"; model_pct "22.3"; chr4 rmsk exon 123494814 123495030 594 + . gene_id "ERV316A3_4q28.1a"; transcript_id "ERV316A3_4q28.1a"; locus "ERV316A3_4q28.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0813"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "-2972"; repStart "2026"; chr4 rmsk exon 123495041 123495999 2098 + . gene_id "ERV316A3_4q28.1a"; transcript_id "ERV316A3_4q28.1a"; locus "ERV316A3_4q28.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0813"; repClass "LTR"; repEnd "3505"; repFamily "ERVL"; repLeft "-1721"; repStart "2565"; chr4 rmsk exon 123496453 123496826 1253 + . gene_id "ERV316A3_4q28.1a"; transcript_id "ERV316A3_4q28.1a"; locus "ERV316A3_4q28.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0813"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERVLB4_4q28.1a ### chr4 rmsk gene 123497415 123499444 . - . gene_id "ERVLB4_4q28.1a"; transcript_id "ERVLB4_4q28.1a"; locus "ERVLB4_4q28.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0513"; model_cov "713"; model_pct "12.5"; chr4 rmsk exon 123497415 123497607 452 - . gene_id "ERVLB4_4q28.1a"; transcript_id "ERVLB4_4q28.1a"; locus "ERVLB4_4q28.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0513"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "5118"; repStart "-399"; chr4 rmsk exon 123498936 123499444 1007 - . gene_id "ERVLB4_4q28.1a"; transcript_id "ERVLB4_4q28.1a"; locus "ERVLB4_4q28.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0513"; repClass "LTR"; repEnd "4619"; repFamily "ERVL"; repLeft "4103"; repStart "-1095"; ### ERVLE_4q28.1a ### chr4 rmsk gene 123499554 123500559 . - . gene_id "ERVLE_4q28.1a"; transcript_id "ERVLE_4q28.1a"; locus "ERVLE_4q28.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1109"; model_cov "754"; model_pct "13.3"; chr4 rmsk exon 123499554 123499789 503 - . gene_id "ERVLE_4q28.1a"; transcript_id "ERVLE_4q28.1a"; locus "ERVLE_4q28.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1109"; repClass "LTR"; repEnd "1352"; repFamily "ERVL"; repLeft "1116"; repStart "-4315"; chr4 rmsk exon 123500047 123500559 714 - . gene_id "ERVLE_4q28.1a"; transcript_id "ERVLE_4q28.1a"; locus "ERVLE_4q28.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1109"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "292"; repStart "-4857"; ### ERVLE_4q28.1b ### chr4 rmsk gene 123692722 123694448 . + . gene_id "ERVLE_4q28.1b"; transcript_id "ERVLE_4q28.1b"; locus "ERVLE_4q28.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1110"; model_cov "939"; model_pct "16.6"; chr4 rmsk exon 123692722 123693024 440 + . gene_id "ERVLE_4q28.1b"; transcript_id "ERVLE_4q28.1b"; locus "ERVLE_4q28.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1110"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "-5336"; repStart "27"; chr4 rmsk exon 123693126 123693244 327 + . gene_id "ERVLE_4q28.1b"; transcript_id "ERVLE_4q28.1b"; locus "ERVLE_4q28.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1110"; repClass "LTR"; repEnd "606"; repFamily "ERVL"; repLeft "-5061"; repStart "486"; chr4 rmsk exon 123693389 123693748 745 + . gene_id "ERVLE_4q28.1b"; transcript_id "ERVLE_4q28.1b"; locus "ERVLE_4q28.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1110"; repClass "LTR"; repEnd "1170"; repFamily "ERVL"; repLeft "-4497"; repStart "799"; chr4 rmsk exon 123694304 123694448 372 + . gene_id "ERVLE_4q28.1b"; transcript_id "ERVLE_4q28.1b"; locus "ERVLE_4q28.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1110"; repClass "LTR"; repEnd "1605"; repFamily "ERVL"; repLeft "-4062"; repStart "1461"; ### HERVL_4q28.1a ### chr4 rmsk gene 124471075 124477064 . + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0415"; model_cov "5137"; model_pct "90.9"; chr4 rmsk exon 124471075 124471512 3126 + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0415"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 124471513 124473096 12151 + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0415"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-4079"; repStart "1"; chr4 rmsk exon 124473094 124476102 23759 + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0415"; repClass "LTR"; repEnd "4797"; repFamily "ERVL"; repLeft "-857"; repStart "1788"; chr4 rmsk exon 124476094 124476642 3908 + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0415"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5100"; chr4 rmsk exon 124476643 124477064 2911 + . gene_id "HERVL_4q28.1a"; transcript_id "HERVL_4q28.1a"; locus "HERVL_4q28.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0415"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_4q28.1 ### chr4 rmsk gene 124558182 124563314 . + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0153"; model_cov "5697"; model_pct "95.8"; chr4 rmsk exon 124558182 124558732 4056 + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0153"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 124558743 124558808 252 + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0153"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "12"; chr4 rmsk exon 124558818 124559793 5180 + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0153"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "-4854"; repStart "1"; chr4 rmsk exon 124559853 124562795 12459 + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0153"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1428"; chr4 rmsk exon 124562796 124563314 3508 + . gene_id "MER41_4q28.1"; transcript_id "MER41_4q28.1"; locus "MER41_4q28.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0153"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERV316A3_4q28.1b ### chr4 rmsk gene 124846291 124848649 . - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0814"; model_cov "1030"; model_pct "19.7"; chr4 rmsk exon 124846291 124846711 1238 - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0814"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "5"; repStart "-7"; chr4 rmsk exon 124846834 124847179 1071 - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0814"; repClass "LTR"; repEnd "5047"; repFamily "ERVL"; repLeft "4696"; repStart "-179"; chr4 rmsk exon 124847535 124847907 534 - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0814"; repClass "LTR"; repEnd "4358"; repFamily "ERVL"; repLeft "3837"; repStart "-868"; chr4 rmsk exon 124848145 124848298 392 - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0814"; repClass "LTR"; repEnd "3974"; repFamily "ERVL"; repLeft "3816"; repStart "-1252"; chr4 rmsk exon 124848503 124848649 324 - . gene_id "ERV316A3_4q28.1b"; transcript_id "ERV316A3_4q28.1b"; locus "ERV316A3_4q28.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0814"; repClass "LTR"; repEnd "192"; repFamily "ERVL"; repLeft "23"; repStart "-259"; ### HERVH_4q28.1b ### chr4 rmsk gene 124875878 124877475 . - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0403"; model_cov "901"; model_pct "11.7"; chr4 rmsk exon 124875878 124876038 992 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "290"; repStart "0"; chr4 rmsk exon 124876070 124876212 636 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "1278"; repFamily "ERV1"; repLeft "1129"; repStart "-6435"; chr4 rmsk exon 124876419 124876724 1797 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "1108"; repFamily "ERV1"; repLeft "801"; repStart "-6605"; chr4 rmsk exon 124876820 124877224 1014 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chr4 rmsk exon 124877225 124877264 315 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "432"; repStart "0"; chr4 rmsk exon 124877264 124877475 1331 - . gene_id "HERVH_4q28.1b"; transcript_id "HERVH_4q28.1b"; locus "HERVH_4q28.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0403"; repClass "LTR"; repEnd "243"; repFamily "ERV1"; repLeft "1"; repStart "-228"; ### ERVLE_4q28.1c ### chr4 rmsk gene 125132497 125134156 . + . gene_id "ERVLE_4q28.1c"; transcript_id "ERVLE_4q28.1c"; locus "ERVLE_4q28.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1114"; model_cov "1171"; model_pct "20.7"; chr4 rmsk exon 125132497 125132663 1379 + . gene_id "ERVLE_4q28.1c"; transcript_id "ERVLE_4q28.1c"; locus "ERVLE_4q28.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1114"; repClass "LTR"; repEnd "3324"; repFamily "ERVL"; repLeft "-2343"; repStart "3159"; chr4 rmsk exon 125133033 125133622 1379 + . gene_id "ERVLE_4q28.1c"; transcript_id "ERVLE_4q28.1c"; locus "ERVLE_4q28.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1114"; repClass "LTR"; repEnd "3954"; repFamily "ERVL"; repLeft "-1713"; repStart "3325"; chr4 rmsk exon 125133831 125134156 654 + . gene_id "ERVLE_4q28.1c"; transcript_id "ERVLE_4q28.1c"; locus "ERVLE_4q28.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1114"; repClass "LTR"; repEnd "5578"; repFamily "ERVL"; repLeft "-89"; repStart "5201"; ### ERVLB4_4q28.1b ### chr4 rmsk gene 125153973 125154563 . + . gene_id "ERVLB4_4q28.1b"; transcript_id "ERVLB4_4q28.1b"; locus "ERVLB4_4q28.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0514"; model_cov "614"; model_pct "10.7"; chr4 rmsk exon 125153973 125154563 1141 + . gene_id "ERVLB4_4q28.1b"; transcript_id "ERVLB4_4q28.1b"; locus "ERVLB4_4q28.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0514"; repClass "LTR"; repEnd "2537"; repFamily "ERVL"; repLeft "-3177"; repStart "1923"; ### ERV316A3_4q28.1c ### chr4 rmsk gene 125214923 125218975 . + . gene_id "ERV316A3_4q28.1c"; transcript_id "ERV316A3_4q28.1c"; locus "ERV316A3_4q28.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0815"; model_cov "3435"; model_pct "65.7"; chr4 rmsk exon 125214923 125215232 743 + . gene_id "ERV316A3_4q28.1c"; transcript_id "ERV316A3_4q28.1c"; locus "ERV316A3_4q28.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0815"; repClass "LTR"; repEnd "563"; repFamily "ERVL"; repLeft "-4663"; repStart "238"; chr4 rmsk exon 125215378 125218000 4730 + . gene_id "ERV316A3_4q28.1c"; transcript_id "ERV316A3_4q28.1c"; locus "ERV316A3_4q28.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0815"; repClass "LTR"; repEnd "3150"; repFamily "ERVL"; repLeft "-2076"; repStart "471"; chr4 rmsk exon 125218381 125218552 4730 + . gene_id "ERV316A3_4q28.1c"; transcript_id "ERV316A3_4q28.1c"; locus "ERV316A3_4q28.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0815"; repClass "LTR"; repEnd "3292"; repFamily "ERVL"; repLeft "-1934"; repStart "3151"; chr4 rmsk exon 125218673 125218975 1322 + . gene_id "ERV316A3_4q28.1c"; transcript_id "ERV316A3_4q28.1c"; locus "ERV316A3_4q28.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0815"; repClass "LTR"; repEnd "3303"; repFamily "ERVL"; repLeft "-1923"; repStart "3013"; ### HERVH_4q28.1c ### chr4 rmsk gene 125561620 125567456 . - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0404"; model_cov "5079"; model_pct "65.8"; chr4 rmsk exon 125561620 125562070 3483 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 125562071 125562450 2435 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 125562449 125562660 1384 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 125562662 125563323 4330 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 125563326 125563830 3423 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 125563809 125567005 20426 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "3308"; repFamily "ERV1"; repLeft "1"; repStart "-4405"; chr4 rmsk exon 125567008 125567456 3710 - . gene_id "HERVH_4q28.1c"; transcript_id "HERVH_4q28.1c"; locus "HERVH_4q28.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0404"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q28.1d ### chr4 rmsk gene 125623133 125624568 . + . gene_id "ERVLE_4q28.1d"; transcript_id "ERVLE_4q28.1d"; locus "ERVLE_4q28.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1115"; model_cov "1040"; model_pct "18.4"; chr4 rmsk exon 125623133 125623570 817 + . gene_id "ERVLE_4q28.1d"; transcript_id "ERVLE_4q28.1d"; locus "ERVLE_4q28.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1115"; repClass "LTR"; repEnd "4681"; repFamily "ERVL"; repLeft "-986"; repStart "4235"; chr4 rmsk exon 125623989 125624568 877 + . gene_id "ERVLE_4q28.1d"; transcript_id "ERVLE_4q28.1d"; locus "ERVLE_4q28.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1115"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "-395"; repStart "4678"; ### ERVLB4_4q28.1c ### chr4 rmsk gene 125940626 125943113 . + . gene_id "ERVLB4_4q28.1c"; transcript_id "ERVLB4_4q28.1c"; locus "ERVLB4_4q28.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0515"; model_cov "2128"; model_pct "37.2"; chr4 rmsk exon 125940626 125940903 472 + . gene_id "ERVLB4_4q28.1c"; transcript_id "ERVLB4_4q28.1c"; locus "ERVLB4_4q28.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0515"; repClass "LTR"; repEnd "703"; repFamily "ERVL"; repLeft "-5011"; repStart "409"; chr4 rmsk exon 125941084 125942304 1149 + . gene_id "ERVLB4_4q28.1c"; transcript_id "ERVLB4_4q28.1c"; locus "ERVLB4_4q28.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0515"; repClass "LTR"; repEnd "2192"; repFamily "ERVL"; repLeft "-3522"; repStart "831"; chr4 rmsk exon 125942613 125942653 1149 + . gene_id "ERVLB4_4q28.1c"; transcript_id "ERVLB4_4q28.1c"; locus "ERVLB4_4q28.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0515"; repClass "LTR"; repEnd "2233"; repFamily "ERVL"; repLeft "-3481"; repStart "2193"; chr4 rmsk exon 125942693 125943113 1149 + . gene_id "ERVLB4_4q28.1c"; transcript_id "ERVLB4_4q28.1c"; locus "ERVLB4_4q28.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0515"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "-3047"; repStart "2234"; ### HERVL40_4q28.1 ### chr4 rmsk gene 126016536 126018955 . + . gene_id "HERVL40_4q28.1"; transcript_id "HERVL40_4q28.1"; locus "HERVL40_4q28.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0111"; model_cov "1903"; model_pct "34.4"; chr4 rmsk exon 126016536 126016951 1134 + . gene_id "HERVL40_4q28.1"; transcript_id "HERVL40_4q28.1"; locus "HERVL40_4q28.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0111"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-6"; repStart "-119"; chr4 rmsk exon 126016957 126017504 1186 + . gene_id "HERVL40_4q28.1"; transcript_id "HERVL40_4q28.1"; locus "HERVL40_4q28.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0111"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "-4961"; repStart "10"; chr4 rmsk exon 126017525 126018840 3689 + . gene_id "HERVL40_4q28.1"; transcript_id "HERVL40_4q28.1"; locus "HERVL40_4q28.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0111"; repClass "LTR"; repEnd "3531"; repFamily "ERVL"; repLeft "-1999"; repStart "2187"; chr4 rmsk exon 126018841 126018955 624 + . gene_id "HERVL40_4q28.1"; transcript_id "HERVL40_4q28.1"; locus "HERVL40_4q28.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0111"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-2"; repStart "403"; ### HERVL_4q28.1b ### chr4 rmsk gene 126059255 126066569 . - . gene_id "HERVL_4q28.1b"; transcript_id "HERVL_4q28.1b"; locus "HERVL_4q28.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0416"; model_cov "5652"; model_pct "100.0"; chr4 rmsk exon 126059255 126059823 2362 - . gene_id "HERVL_4q28.1b"; transcript_id "HERVL_4q28.1b"; locus "HERVL_4q28.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0416"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "5"; repStart "-8"; chr4 rmsk exon 126059828 126063877 33634 - . gene_id "HERVL_4q28.1b"; transcript_id "HERVL_4q28.1b"; locus "HERVL_4q28.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0416"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1574"; repStart "0"; chr4 rmsk exon 126064467 126066005 33634 - . gene_id "HERVL_4q28.1b"; transcript_id "HERVL_4q28.1b"; locus "HERVL_4q28.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0416"; repClass "LTR"; repEnd "1573"; repFamily "ERVL"; repLeft "1"; repStart "-4081"; chr4 rmsk exon 126066012 126066569 1987 - . gene_id "HERVL_4q28.1b"; transcript_id "HERVL_4q28.1b"; locus "HERVL_4q28.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0416"; repClass "LTR"; repEnd "544"; repFamily "ERVL"; repLeft "1"; repStart "-10"; ### HML3_4q28.1a ### chr4 rmsk gene 126130749 126135134 . + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0073"; model_cov "3374"; model_pct "56.0"; chr4 rmsk exon 126130749 126131248 4057 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 126131249 126131827 4344 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr4 rmsk exon 126131826 126132870 8508 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "-3540"; repStart "1436"; chr4 rmsk exon 126132870 126133000 1079 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "2666"; chr4 rmsk exon 126133001 126133367 3034 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "4091"; repFamily "ERVK"; repLeft "-1930"; repStart "3723"; chr4 rmsk exon 126133366 126134614 9964 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "4769"; chr4 rmsk exon 126134617 126135134 4160 + . gene_id "HML3_4q28.1a"; transcript_id "HML3_4q28.1a"; locus "HML3_4q28.1a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0073"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_4q28.1d ### chr4 rmsk gene 126145184 126150543 . - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0405"; model_cov "4776"; model_pct "61.9"; chr4 rmsk exon 126145184 126145616 2598 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 126145617 126145998 2549 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 126146001 126146201 1251 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "5612"; repStart "-1896"; chr4 rmsk exon 126146209 126146839 2881 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 126146842 126147335 3394 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr4 rmsk exon 126147335 126149922 16297 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "486"; repStart "-4423"; chr4 rmsk exon 126149891 126150113 1497 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "225"; repFamily "ERV1"; repLeft "1"; repStart "-7488"; chr4 rmsk exon 126150114 126150543 2541 - . gene_id "HERVH_4q28.1d"; transcript_id "HERVH_4q28.1d"; locus "HERVH_4q28.1d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0405"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_4q28.1c ### chr4 rmsk gene 126186191 126193866 . - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0417"; model_cov "5650"; model_pct "99.9"; chr4 rmsk exon 126186191 126186700 2169 - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0417"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 126186701 126191188 38922 - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0417"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1125"; repStart "0"; chr4 rmsk exon 126191476 126192298 38922 - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0417"; repClass "LTR"; repEnd "1124"; repFamily "ERVL"; repLeft "329"; repStart "-4530"; chr4 rmsk exon 126192997 126193317 38922 - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0417"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "2"; repStart "-5326"; chr4 rmsk exon 126193320 126193866 2043 - . gene_id "HERVL_4q28.1c"; transcript_id "HERVL_4q28.1c"; locus "HERVL_4q28.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0417"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-100"; repStart "-1"; ### HUERSP2_4q28.1 ### chr4 rmsk gene 126478211 126481800 . + . gene_id "HUERSP2_4q28.1"; transcript_id "HUERSP2_4q28.1"; locus "HUERSP2_4q28.1"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0046"; model_cov "2674"; model_pct "86.6"; chr4 rmsk exon 126478211 126478955 3598 + . gene_id "HUERSP2_4q28.1"; transcript_id "HUERSP2_4q28.1"; locus "HUERSP2_4q28.1"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0046"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 126479065 126481800 13532 + . gene_id "HUERSP2_4q28.1"; transcript_id "HUERSP2_4q28.1"; locus "HUERSP2_4q28.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0046"; repClass "LTR"; repEnd "2749"; repFamily "ERV1"; repLeft "-339"; repStart "75"; ### ERVLE_4q28.1e ### chr4 rmsk gene 126488255 126491707 . - . gene_id "ERVLE_4q28.1e"; transcript_id "ERVLE_4q28.1e"; locus "ERVLE_4q28.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1116"; model_cov "1991"; model_pct "35.1"; chr4 rmsk exon 126488255 126489184 1983 - . gene_id "ERVLE_4q28.1e"; transcript_id "ERVLE_4q28.1e"; locus "ERVLE_4q28.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1116"; repClass "LTR"; repEnd "5256"; repFamily "ERVL"; repLeft "4277"; repStart "-411"; chr4 rmsk exon 126489240 126489845 3199 - . gene_id "ERVLE_4q28.1e"; transcript_id "ERVLE_4q28.1e"; locus "ERVLE_4q28.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1116"; repClass "LTR"; repEnd "4092"; repFamily "ERVL"; repLeft "3488"; repStart "-1575"; chr4 rmsk exon 126491306 126491707 3199 - . gene_id "ERVLE_4q28.1e"; transcript_id "ERVLE_4q28.1e"; locus "ERVLE_4q28.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1116"; repClass "LTR"; repEnd "3487"; repFamily "ERVL"; repLeft "3079"; repStart "-2180"; ### ERV316A3_4q28.1d ### chr4 rmsk gene 126640636 126644869 . + . gene_id "ERV316A3_4q28.1d"; transcript_id "ERV316A3_4q28.1d"; locus "ERV316A3_4q28.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0816"; model_cov "3253"; model_pct "62.2"; chr4 rmsk exon 126640636 126641071 1310 + . gene_id "ERV316A3_4q28.1d"; transcript_id "ERV316A3_4q28.1d"; locus "ERV316A3_4q28.1d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0816"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 126641092 126641846 6891 + . gene_id "ERV316A3_4q28.1d"; transcript_id "ERV316A3_4q28.1d"; locus "ERV316A3_4q28.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0816"; repClass "LTR"; repEnd "771"; repFamily "ERVL"; repLeft "-4455"; repStart "27"; chr4 rmsk exon 126642392 126644869 6891 + . gene_id "ERV316A3_4q28.1d"; transcript_id "ERV316A3_4q28.1d"; locus "ERV316A3_4q28.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0816"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "-1945"; repStart "772"; ### ERV316A3_4q28.1e ### chr4 rmsk gene 127116755 127117327 . - . gene_id "ERV316A3_4q28.1e"; transcript_id "ERV316A3_4q28.1e"; locus "ERV316A3_4q28.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0817"; model_cov "571"; model_pct "10.9"; chr4 rmsk exon 127116755 127116926 713 - . gene_id "ERV316A3_4q28.1e"; transcript_id "ERV316A3_4q28.1e"; locus "ERV316A3_4q28.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0817"; repClass "LTR"; repEnd "4874"; repFamily "ERVL"; repLeft "4706"; repStart "-352"; chr4 rmsk exon 127116939 127117327 714 - . gene_id "ERV316A3_4q28.1e"; transcript_id "ERV316A3_4q28.1e"; locus "ERV316A3_4q28.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0817"; repClass "LTR"; repEnd "2809"; repFamily "ERVL"; repLeft "2406"; repStart "-2417"; ### ERVLE_4q28.1f ### chr4 rmsk gene 127165712 127166619 . + . gene_id "ERVLE_4q28.1f"; transcript_id "ERVLE_4q28.1f"; locus "ERVLE_4q28.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1117"; model_cov "840"; model_pct "14.8"; chr4 rmsk exon 127165712 127165830 536 + . gene_id "ERVLE_4q28.1f"; transcript_id "ERVLE_4q28.1f"; locus "ERVLE_4q28.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1117"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "-2715"; repStart "2830"; chr4 rmsk exon 127165911 127166352 2879 + . gene_id "ERVLE_4q28.1f"; transcript_id "ERVLE_4q28.1f"; locus "ERVLE_4q28.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1117"; repClass "LTR"; repEnd "3493"; repFamily "ERVL"; repLeft "-2174"; repStart "3034"; chr4 rmsk exon 127166379 127166619 2879 + . gene_id "ERVLE_4q28.1f"; transcript_id "ERVLE_4q28.1f"; locus "ERVLE_4q28.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1117"; repClass "LTR"; repEnd "3753"; repFamily "ERVL"; repLeft "-1914"; repStart "3494"; ### ERVLE_4q28.1g ### chr4 rmsk gene 127181794 127182808 . + . gene_id "ERVLE_4q28.1g"; transcript_id "ERVLE_4q28.1g"; locus "ERVLE_4q28.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1118"; model_cov "1013"; model_pct "17.9"; chr4 rmsk exon 127181794 127182808 3183 + . gene_id "ERVLE_4q28.1g"; transcript_id "ERVLE_4q28.1g"; locus "ERVLE_4q28.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1118"; repClass "LTR"; repEnd "3779"; repFamily "ERVL"; repLeft "-1888"; repStart "2766"; ### ERVLE_4q28.1h ### chr4 rmsk gene 127188845 127190350 . + . gene_id "ERVLE_4q28.1h"; transcript_id "ERVLE_4q28.1h"; locus "ERVLE_4q28.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1119"; model_cov "1440"; model_pct "25.4"; chr4 rmsk exon 127188845 127188988 466 + . gene_id "ERVLE_4q28.1h"; transcript_id "ERVLE_4q28.1h"; locus "ERVLE_4q28.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1119"; repClass "LTR"; repEnd "4046"; repFamily "ERVL"; repLeft "-1621"; repStart "3902"; chr4 rmsk exon 127189000 127189998 1809 + . gene_id "ERVLE_4q28.1h"; transcript_id "ERVLE_4q28.1h"; locus "ERVLE_4q28.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1119"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-365"; repStart "4148"; chr4 rmsk exon 127190215 127190350 291 + . gene_id "ERVLE_4q28.1h"; transcript_id "ERVLE_4q28.1h"; locus "ERVLE_4q28.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1119"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5525"; ### HML3_4q28.1b ### chr4 rmsk gene 127271438 127277471 . - . gene_id "HML3_4q28.1b"; transcript_id "HML3_4q28.1b"; locus "HML3_4q28.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0074"; model_cov "5061"; model_pct "84.1"; chr4 rmsk exon 127271438 127271935 3470 - . gene_id "HML3_4q28.1b"; transcript_id "HML3_4q28.1b"; locus "HML3_4q28.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0074"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 127271936 127276305 34462 - . gene_id "HML3_4q28.1b"; transcript_id "HML3_4q28.1b"; locus "HML3_4q28.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0074"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1638"; repStart "0"; chr4 rmsk exon 127276302 127276976 5116 - . gene_id "HML3_4q28.1b"; transcript_id "HML3_4q28.1b"; locus "HML3_4q28.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0074"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "1"; repStart "-5342"; chr4 rmsk exon 127276977 127277471 3509 - . gene_id "HML3_4q28.1b"; transcript_id "HML3_4q28.1b"; locus "HML3_4q28.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0074"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_4q28.1e ### chr4 rmsk gene 127511038 127517102 . - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0406"; model_cov "5401"; model_pct "70.0"; chr4 rmsk exon 127511038 127511386 2198 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 127511387 127511764 2391 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 127511763 127511977 1390 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 127511979 127513670 7089 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr4 rmsk exon 127513663 127513810 969 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr4 rmsk exon 127513805 127516751 19731 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 127516754 127517102 2158 - . gene_id "HERVH_4q28.1e"; transcript_id "HERVH_4q28.1e"; locus "HERVH_4q28.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0406"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_4q28.2a ### chr4 rmsk gene 128246173 128250483 . - . gene_id "MER4_4q28.2a"; transcript_id "MER4_4q28.2a"; locus "MER4_4q28.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0241"; model_cov "4148"; model_pct "62.9"; chr4 rmsk exon 128246173 128246641 3310 - . gene_id "MER4_4q28.2a"; transcript_id "MER4_4q28.2a"; locus "MER4_4q28.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0241"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 128246653 128246877 15885 - . gene_id "MER4_4q28.2a"; transcript_id "MER4_4q28.2a"; locus "MER4_4q28.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0241"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6379"; repStart "-5"; chr4 rmsk exon 128247175 128249622 15885 - . gene_id "MER4_4q28.2a"; transcript_id "MER4_4q28.2a"; locus "MER4_4q28.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0241"; repClass "LTR"; repEnd "6378"; repFamily "ERV1"; repLeft "3837"; repStart "-220"; chr4 rmsk exon 128249622 128250483 4201 - . gene_id "MER4_4q28.2a"; transcript_id "MER4_4q28.2a"; locus "MER4_4q28.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0241"; repClass "LTR"; repEnd "4228"; repFamily "ERV1"; repLeft "2835"; repStart "-2370"; ### MER4_4q28.2b ### chr4 rmsk gene 128250713 128252653 . - . gene_id "MER4_4q28.2b"; transcript_id "MER4_4q28.2b"; locus "MER4_4q28.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0242"; model_cov "2058"; model_pct "31.2"; chr4 rmsk exon 128250713 128251420 4201 - . gene_id "MER4_4q28.2b"; transcript_id "MER4_4q28.2b"; locus "MER4_4q28.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0242"; repClass "LTR"; repEnd "4228"; repFamily "ERV1"; repLeft "3080"; repStart "-2370"; chr4 rmsk exon 128251437 128251683 1533 - . gene_id "MER4_4q28.2b"; transcript_id "MER4_4q28.2b"; locus "MER4_4q28.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0242"; repClass "LTR"; repEnd "1028"; repFamily "ERV1"; repLeft "764"; repStart "-5570"; chr4 rmsk exon 128251705 128251836 4136 - . gene_id "MER4_4q28.2b"; transcript_id "MER4_4q28.2b"; locus "MER4_4q28.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0242"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "553"; repStart "-5911"; chr4 rmsk exon 128252139 128252653 4136 - . gene_id "MER4_4q28.2b"; transcript_id "MER4_4q28.2b"; locus "MER4_4q28.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0242"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "40"; repStart "-6046"; ### MER4_4q28.2c ### chr4 rmsk gene 128252665 128254205 . - . gene_id "MER4_4q28.2c"; transcript_id "MER4_4q28.2c"; locus "MER4_4q28.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0243"; model_cov "1083"; model_pct "16.4"; chr4 rmsk exon 128252665 128252992 1153 - . gene_id "MER4_4q28.2c"; transcript_id "MER4_4q28.2c"; locus "MER4_4q28.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0243"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "2126"; repStart "-4163"; chr4 rmsk exon 128253079 128253170 315 - . gene_id "MER4_4q28.2c"; transcript_id "MER4_4q28.2c"; locus "MER4_4q28.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0243"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-722"; repStart "-7231"; chr4 rmsk exon 128253158 128253723 2433 - . gene_id "MER4_4q28.2c"; transcript_id "MER4_4q28.2c"; locus "MER4_4q28.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0243"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr4 rmsk exon 128253727 128254205 3502 - . gene_id "MER4_4q28.2c"; transcript_id "MER4_4q28.2c"; locus "MER4_4q28.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0243"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_4q28.2 ### chr4 rmsk gene 128259895 128266486 . + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0065"; model_cov "4902"; model_pct "71.1"; chr4 rmsk exon 128259895 128260171 1713 + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0065"; repClass "LTR"; repEnd "275"; repFamily "ERV1"; repLeft "-188"; repStart "1"; chr4 rmsk exon 128260173 128260449 1828 + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0065"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "191"; chr4 rmsk exon 128260450 128261899 9786 + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0065"; repClass "LTR"; repEnd "1419"; repFamily "ERV1"; repLeft "-5477"; repStart "1"; chr4 rmsk exon 128261920 128265255 26380 + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0065"; repClass "LTR"; repEnd "4925"; repFamily "ERV1"; repLeft "-1971"; repStart "1584"; chr4 rmsk exon 128266342 128266486 26380 + . gene_id "HARLEQUIN_4q28.2"; transcript_id "HARLEQUIN_4q28.2"; locus "HARLEQUIN_4q28.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0065"; repClass "LTR"; repEnd "5069"; repFamily "ERV1"; repLeft "-1827"; repStart "4926"; ### HERVL_4q28.2 ### chr4 rmsk gene 128442399 128444049 . + . gene_id "HERVL_4q28.2"; transcript_id "HERVL_4q28.2"; locus "HERVL_4q28.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0418"; model_cov "1060"; model_pct "18.7"; chr4 rmsk exon 128442399 128443463 7305 + . gene_id "HERVL_4q28.2"; transcript_id "HERVL_4q28.2"; locus "HERVL_4q28.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0418"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4594"; chr4 rmsk exon 128443464 128444049 2161 + . gene_id "HERVL_4q28.2"; transcript_id "HERVL_4q28.2"; locus "HERVL_4q28.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0418"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_4q28.2 ### chr4 rmsk gene 128640894 128646609 . - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0407"; model_cov "4914"; model_pct "63.7"; chr4 rmsk exon 128640894 128641303 2946 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 128641304 128641677 2406 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 128641678 128641892 1273 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 128641894 128642556 4543 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 128642559 128643061 3512 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 128643052 128643201 999 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 128643181 128646197 19775 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 128646200 128646609 3027 - . gene_id "HERVH_4q28.2"; transcript_id "HERVH_4q28.2"; locus "HERVH_4q28.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0407"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q28.2a ### chr4 rmsk gene 129260324 129262288 . + . gene_id "ERVLE_4q28.2a"; transcript_id "ERVLE_4q28.2a"; locus "ERVLE_4q28.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1120"; model_cov "2044"; model_pct "36.1"; chr4 rmsk exon 129260324 129261906 4464 + . gene_id "ERVLE_4q28.2a"; transcript_id "ERVLE_4q28.2a"; locus "ERVLE_4q28.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1120"; repClass "LTR"; repEnd "4295"; repFamily "ERVL"; repLeft "-1372"; repStart "2597"; chr4 rmsk exon 129261951 129262288 1265 + . gene_id "ERVLE_4q28.2a"; transcript_id "ERVLE_4q28.2a"; locus "ERVLE_4q28.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1120"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "-713"; repStart "4608"; ### ERVLE_4q28.2b ### chr4 rmsk gene 129495397 129498177 . - . gene_id "ERVLE_4q28.2b"; transcript_id "ERVLE_4q28.2b"; locus "ERVLE_4q28.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1121"; model_cov "2696"; model_pct "47.6"; chr4 rmsk exon 129495397 129496036 642 - . gene_id "ERVLE_4q28.2b"; transcript_id "ERVLE_4q28.2b"; locus "ERVLE_4q28.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1121"; repClass "LTR"; repEnd "4409"; repFamily "ERVL"; repLeft "3756"; repStart "-1258"; chr4 rmsk exon 129496067 129496499 1446 - . gene_id "ERVLE_4q28.2b"; transcript_id "ERVLE_4q28.2b"; locus "ERVLE_4q28.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1121"; repClass "LTR"; repEnd "3208"; repFamily "ERVL"; repLeft "2670"; repStart "-2459"; chr4 rmsk exon 129496783 129498177 1446 - . gene_id "ERVLE_4q28.2b"; transcript_id "ERVLE_4q28.2b"; locus "ERVLE_4q28.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1121"; repClass "LTR"; repEnd "2656"; repFamily "ERVL"; repLeft "1151"; repStart "-3011"; ### ERVLE_4q28.2c ### chr4 rmsk gene 129541552 129545653 . + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1122"; model_cov "2983"; model_pct "52.6"; chr4 rmsk exon 129541552 129541691 298 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "1421"; repFamily "ERVL"; repLeft "-4246"; repStart "1279"; chr4 rmsk exon 129541734 129542372 510 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "1765"; repFamily "ERVL"; repLeft "-3902"; repStart "1093"; chr4 rmsk exon 129542598 129543477 2032 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "-2570"; repStart "2202"; chr4 rmsk exon 129543552 129543785 523 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "3456"; repFamily "ERVL"; repLeft "-2211"; repStart "3222"; chr4 rmsk exon 129544423 129544490 884 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "4171"; repFamily "ERVL"; repLeft "-1496"; repStart "4109"; chr4 rmsk exon 129544800 129545244 884 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-1251"; repStart "3744"; chr4 rmsk exon 129545352 129545653 489 + . gene_id "ERVLE_4q28.2c"; transcript_id "ERVLE_4q28.2c"; locus "ERVLE_4q28.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1122"; repClass "LTR"; repEnd "4805"; repFamily "ERVL"; repLeft "-862"; repStart "4499"; ### PRIMA4_4q28.2 ### chr4 rmsk gene 130061140 130066571 . + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0068"; model_cov "3395"; model_pct "41.1"; chr4 rmsk exon 130061140 130061237 296 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "2304"; repFamily "ERV1"; repLeft "-5966"; repStart "2206"; chr4 rmsk exon 130062021 130062208 258 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "3253"; repFamily "ERV1"; repLeft "-5017"; repStart "3048"; chr4 rmsk exon 130062367 130062575 317 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "3664"; repFamily "ERV1"; repLeft "-4606"; repStart "3456"; chr4 rmsk exon 130062633 130064883 3046 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "5704"; repFamily "ERV1"; repLeft "-2566"; repStart "3467"; chr4 rmsk exon 130065628 130065735 3046 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "5800"; repFamily "ERV1"; repLeft "-2470"; repStart "5705"; chr4 rmsk exon 130066052 130066571 3046 + . gene_id "PRIMA4_4q28.2"; transcript_id "PRIMA4_4q28.2"; locus "PRIMA4_4q28.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0068"; repClass "LTR"; repEnd "6353"; repFamily "ERV1"; repLeft "-1917"; repStart "5801"; ### ERVLE_4q28.3a ### chr4 rmsk gene 130228348 130231329 . - . gene_id "ERVLE_4q28.3a"; transcript_id "ERVLE_4q28.3a"; locus "ERVLE_4q28.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1123"; model_cov "3079"; model_pct "54.3"; chr4 rmsk exon 130228348 130231329 9903 - . gene_id "ERVLE_4q28.3a"; transcript_id "ERVLE_4q28.3a"; locus "ERVLE_4q28.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1123"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "2036"; repStart "-552"; ### ERVLE_4q28.3b ### chr4 rmsk gene 130336550 130338687 . - . gene_id "ERVLE_4q28.3b"; transcript_id "ERVLE_4q28.3b"; locus "ERVLE_4q28.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1124"; model_cov "1625"; model_pct "28.7"; chr4 rmsk exon 130336550 130337087 914 - . gene_id "ERVLE_4q28.3b"; transcript_id "ERVLE_4q28.3b"; locus "ERVLE_4q28.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1124"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4677"; repStart "-442"; chr4 rmsk exon 130337143 130337427 614 - . gene_id "ERVLE_4q28.3b"; transcript_id "ERVLE_4q28.3b"; locus "ERVLE_4q28.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1124"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "4628"; repStart "-751"; chr4 rmsk exon 130337567 130338130 436 - . gene_id "ERVLE_4q28.3b"; transcript_id "ERVLE_4q28.3b"; locus "ERVLE_4q28.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1124"; repClass "LTR"; repEnd "1789"; repFamily "ERVL"; repLeft "1204"; repStart "-3878"; chr4 rmsk exon 130338493 130338687 505 - . gene_id "ERVLE_4q28.3b"; transcript_id "ERVLE_4q28.3b"; locus "ERVLE_4q28.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1124"; repClass "LTR"; repEnd "914"; repFamily "ERVL"; repLeft "710"; repStart "-4753"; ### ERVLE_4q28.3c ### chr4 rmsk gene 130419654 130421527 . + . gene_id "ERVLE_4q28.3c"; transcript_id "ERVLE_4q28.3c"; locus "ERVLE_4q28.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1125"; model_cov "1142"; model_pct "20.2"; chr4 rmsk exon 130419654 130420252 441 + . gene_id "ERVLE_4q28.3c"; transcript_id "ERVLE_4q28.3c"; locus "ERVLE_4q28.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1125"; repClass "LTR"; repEnd "785"; repFamily "ERVL"; repLeft "-4882"; repStart "181"; chr4 rmsk exon 130420399 130420610 546 + . gene_id "ERVLE_4q28.3c"; transcript_id "ERVLE_4q28.3c"; locus "ERVLE_4q28.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1125"; repClass "LTR"; repEnd "1206"; repFamily "ERVL"; repLeft "-4461"; repStart "996"; chr4 rmsk exon 130421203 130421527 546 + . gene_id "ERVLE_4q28.3c"; transcript_id "ERVLE_4q28.3c"; locus "ERVLE_4q28.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1125"; repClass "LTR"; repEnd "1535"; repFamily "ERVL"; repLeft "-4132"; repStart "1207"; ### ERV316A3_4q28.3a ### chr4 rmsk gene 130467291 130468440 . + . gene_id "ERV316A3_4q28.3a"; transcript_id "ERV316A3_4q28.3a"; locus "ERV316A3_4q28.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0818"; model_cov "638"; model_pct "12.2"; chr4 rmsk exon 130467291 130467568 592 + . gene_id "ERV316A3_4q28.3a"; transcript_id "ERV316A3_4q28.3a"; locus "ERV316A3_4q28.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0818"; repClass "LTR"; repEnd "249"; repFamily "ERVL"; repLeft "-214"; repStart "-16"; chr4 rmsk exon 130467615 130467810 714 + . gene_id "ERV316A3_4q28.3a"; transcript_id "ERV316A3_4q28.3a"; locus "ERV316A3_4q28.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0818"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-8"; repStart "258"; chr4 rmsk exon 130467814 130468440 1213 + . gene_id "ERV316A3_4q28.3a"; transcript_id "ERV316A3_4q28.3a"; locus "ERV316A3_4q28.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0818"; repClass "LTR"; repEnd "639"; repFamily "ERVL"; repLeft "-4587"; repStart "1"; ### MER4_4q28.3a ### chr4 rmsk gene 130567214 130575159 . - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0244"; model_cov "5846"; model_pct "88.6"; chr4 rmsk exon 130567214 130567735 3073 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0244"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 130567742 130569888 14504 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4412"; repStart "-2"; chr4 rmsk exon 130570180 130570743 14504 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "4411"; repFamily "ERV1"; repLeft "3837"; repStart "-2187"; chr4 rmsk exon 130570743 130571696 3758 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2736"; repStart "-2917"; chr4 rmsk exon 130571936 130572660 3736 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1759"; repStart "-4103"; chr4 rmsk exon 130572730 130573648 5314 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "990"; repFamily "ERV1"; repLeft "29"; repStart "-5608"; chr4 rmsk exon 130574241 130574718 2482 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0244"; repClass "LTR"; repEnd "-1225"; repFamily "ERV1"; repLeft "-1671"; repStart "-7823"; chr4 rmsk exon 130574722 130575159 3054 - . gene_id "MER4_4q28.3a"; transcript_id "MER4_4q28.3a"; locus "MER4_4q28.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0244"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "14"; repStart "0"; ### ERV316A3_4q28.3b ### chr4 rmsk gene 130645221 130645983 . - . gene_id "ERV316A3_4q28.3b"; transcript_id "ERV316A3_4q28.3b"; locus "ERV316A3_4q28.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0819"; model_cov "759"; model_pct "14.5"; chr4 rmsk exon 130645221 130645983 1418 - . gene_id "ERV316A3_4q28.3b"; transcript_id "ERV316A3_4q28.3b"; locus "ERV316A3_4q28.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0819"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "3625"; repStart "-842"; ### ERV316A3_4q28.3c ### chr4 rmsk gene 130658588 130659358 . - . gene_id "ERV316A3_4q28.3c"; transcript_id "ERV316A3_4q28.3c"; locus "ERV316A3_4q28.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0820"; model_cov "1041"; model_pct "19.9"; chr4 rmsk exon 130658588 130659358 883 - . gene_id "ERV316A3_4q28.3c"; transcript_id "ERV316A3_4q28.3c"; locus "ERV316A3_4q28.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0820"; repClass "LTR"; repEnd "3308"; repFamily "ERVL"; repLeft "2267"; repStart "-1918"; ### HERVL40_4q28.3a ### chr4 rmsk gene 130704203 130705620 . - . gene_id "HERVL40_4q28.3a"; transcript_id "HERVL40_4q28.3a"; locus "HERVL40_4q28.3a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0112"; model_cov "1109"; model_pct "20.1"; chr4 rmsk exon 130704203 130704858 1881 - . gene_id "HERVL40_4q28.3a"; transcript_id "HERVL40_4q28.3a"; locus "HERVL40_4q28.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0112"; repClass "LTR"; repEnd "4764"; repFamily "ERVL"; repLeft "4103"; repStart "-766"; chr4 rmsk exon 130705013 130705191 486 - . gene_id "HERVL40_4q28.3a"; transcript_id "HERVL40_4q28.3a"; locus "HERVL40_4q28.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0112"; repClass "LTR"; repEnd "2887"; repFamily "ERVL"; repLeft "2695"; repStart "-2643"; chr4 rmsk exon 130705370 130705620 372 - . gene_id "HERVL40_4q28.3a"; transcript_id "HERVL40_4q28.3a"; locus "HERVL40_4q28.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0112"; repClass "LTR"; repEnd "1602"; repFamily "ERVL"; repLeft "1346"; repStart "-3928"; ### HERVL40_4q28.3b ### chr4 rmsk gene 130735560 130738711 . + . gene_id "HERVL40_4q28.3b"; transcript_id "HERVL40_4q28.3b"; locus "HERVL40_4q28.3b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0114"; model_cov "964"; model_pct "17.4"; chr4 rmsk exon 130735560 130736398 1229 + . gene_id "HERVL40_4q28.3b"; transcript_id "HERVL40_4q28.3b"; locus "HERVL40_4q28.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0114"; repClass "LTR"; repEnd "1481"; repFamily "ERVL"; repLeft "-4049"; repStart "635"; chr4 rmsk exon 130738591 130738711 273 + . gene_id "HERVL40_4q28.3b"; transcript_id "HERVL40_4q28.3b"; locus "HERVL40_4q28.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0114"; repClass "LTR"; repEnd "1613"; repFamily "ERVL"; repLeft "-3917"; repStart "1495"; ### ERVLB4_4q28.3a ### chr4 rmsk gene 130751139 130758463 . + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0518"; model_cov "5347"; model_pct "93.6"; chr4 rmsk exon 130751139 130751544 1578 + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0518"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 130751546 130753052 13665 + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0518"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "-4121"; repStart "2"; chr4 rmsk exon 130753127 130754335 13665 + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0518"; repClass "LTR"; repEnd "2870"; repFamily "ERVL"; repLeft "-2844"; repStart "1594"; chr4 rmsk exon 130754385 130754770 13665 + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0518"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "-2433"; repStart "2871"; chr4 rmsk exon 130756479 130758463 9946 + . gene_id "ERVLB4_4q28.3a"; transcript_id "ERVLB4_4q28.3a"; locus "ERVLB4_4q28.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0518"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "-334"; repStart "3310"; ### HERVL40_4q28.3c ### chr4 rmsk gene 130758518 130761044 . - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0115"; model_cov "1185"; model_pct "21.4"; chr4 rmsk exon 130758518 130758640 335 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "3707"; repFamily "ERVL"; repLeft "3584"; repStart "-1823"; chr4 rmsk exon 130758650 130758779 354 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "3213"; repStart "-2190"; chr4 rmsk exon 130758971 130758997 1320 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "2946"; repFamily "ERVL"; repLeft "2926"; repStart "-2584"; chr4 rmsk exon 130759297 130759657 1320 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "2925"; repFamily "ERVL"; repLeft "2561"; repStart "-2605"; chr4 rmsk exon 130759758 130759990 722 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "2297"; repFamily "ERVL"; repLeft "2051"; repStart "-3233"; chr4 rmsk exon 130759996 130760156 441 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "1461"; repStart "-3918"; chr4 rmsk exon 130760810 130760885 441 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "1460"; repFamily "ERVL"; repLeft "1385"; repStart "-4070"; chr4 rmsk exon 130760965 130761044 344 - . gene_id "HERVL40_4q28.3c"; transcript_id "HERVL40_4q28.3c"; locus "HERVL40_4q28.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0115"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "1281"; repStart "-4170"; ### HERVH_4q28.3a ### chr4 rmsk gene 130767409 130773268 . + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0408"; model_cov "5113"; model_pct "66.3"; chr4 rmsk exon 130767409 130767810 2501 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 130767813 130770773 19944 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr4 rmsk exon 130770760 130771612 5906 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 130771615 130772277 4256 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 130772279 130772492 1297 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 130772493 130772869 2319 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 130772870 130773268 2518 + . gene_id "HERVH_4q28.3a"; transcript_id "HERVH_4q28.3a"; locus "HERVH_4q28.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0408"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q28.3d ### chr4 rmsk gene 130823240 130824349 . - . gene_id "ERV316A3_4q28.3d"; transcript_id "ERV316A3_4q28.3d"; locus "ERV316A3_4q28.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0821"; model_cov "810"; model_pct "15.5"; chr4 rmsk exon 130823240 130823520 911 - . gene_id "ERV316A3_4q28.3d"; transcript_id "ERV316A3_4q28.3d"; locus "ERV316A3_4q28.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0821"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "4149"; repStart "-788"; chr4 rmsk exon 130823673 130823973 758 - . gene_id "ERV316A3_4q28.3d"; transcript_id "ERV316A3_4q28.3d"; locus "ERV316A3_4q28.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0821"; repClass "LTR"; repEnd "3745"; repFamily "ERVL"; repLeft "3405"; repStart "-1481"; chr4 rmsk exon 130824031 130824349 355 - . gene_id "ERV316A3_4q28.3d"; transcript_id "ERV316A3_4q28.3d"; locus "ERV316A3_4q28.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0821"; repClass "LTR"; repEnd "2283"; repFamily "ERVL"; repLeft "2102"; repStart "-2943"; ### ERV316A3_4q28.3e ### chr4 rmsk gene 130824400 130827638 . - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0822"; model_cov "1790"; model_pct "34.3"; chr4 rmsk exon 130824400 130824789 1341 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "2100"; repStart "-2738"; chr4 rmsk exon 130825162 130825370 1341 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "2099"; repFamily "ERVL"; repLeft "1893"; repStart "-3127"; chr4 rmsk exon 130825536 130825935 807 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "1644"; repFamily "ERVL"; repLeft "1227"; repStart "-3582"; chr4 rmsk exon 130826070 130826832 1369 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "819"; repFamily "ERVL"; repLeft "40"; repStart "-4407"; chr4 rmsk exon 130826869 130826927 1170 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "370"; repStart "-21"; chr4 rmsk exon 130827268 130827638 1170 - . gene_id "ERV316A3_4q28.3e"; transcript_id "ERV316A3_4q28.3e"; locus "ERV316A3_4q28.3e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0822"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "1"; repStart "-94"; ### ERV316A3_4q28.3f ### chr4 rmsk gene 130828808 130830679 . + . gene_id "ERV316A3_4q28.3f"; transcript_id "ERV316A3_4q28.3f"; locus "ERV316A3_4q28.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0823"; model_cov "1020"; model_pct "19.5"; chr4 rmsk exon 130828808 130828926 295 + . gene_id "ERV316A3_4q28.3f"; transcript_id "ERV316A3_4q28.3f"; locus "ERV316A3_4q28.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0823"; repClass "LTR"; repEnd "2073"; repFamily "ERVL"; repLeft "-3153"; repStart "1955"; chr4 rmsk exon 130829053 130829935 972 + . gene_id "ERV316A3_4q28.3f"; transcript_id "ERV316A3_4q28.3f"; locus "ERV316A3_4q28.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0823"; repClass "LTR"; repEnd "3700"; repFamily "ERVL"; repLeft "-1526"; repStart "2798"; chr4 rmsk exon 130830467 130830679 576 + . gene_id "ERV316A3_4q28.3f"; transcript_id "ERV316A3_4q28.3f"; locus "ERV316A3_4q28.3f"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0823"; repClass "LTR"; repEnd "301"; repFamily "ERVL"; repLeft "-237"; repStart "82"; ### HERV9_4q28.3 ### chr4 rmsk gene 130843340 130849351 . - . gene_id "HERV9_4q28.3"; transcript_id "HERV9_4q28.3"; locus "HERV9_4q28.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0046"; model_cov "5469"; model_pct "64.8"; chr4 rmsk exon 130843340 130848763 43969 - . gene_id "HERV9_4q28.3"; transcript_id "HERV9_4q28.3"; locus "HERV9_4q28.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0046"; repClass "LTR"; repEnd "5470"; repFamily "ERV1"; repLeft "1"; repStart "-2966"; chr4 rmsk exon 130848764 130849351 3881 - . gene_id "HERV9_4q28.3"; transcript_id "HERV9_4q28.3"; locus "HERV9_4q28.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0046"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLB_4q28.3 ### chr4 rmsk gene 130851839 130858198 . + . gene_id "PABLB_4q28.3"; transcript_id "PABLB_4q28.3"; locus "PABLB_4q28.3"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0030"; model_cov "5387"; model_pct "75.6"; chr4 rmsk exon 130851839 130851932 283 + . gene_id "PABLB_4q28.3"; transcript_id "PABLB_4q28.3"; locus "PABLB_4q28.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0030"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "-6369"; repStart "656"; chr4 rmsk exon 130852318 130854398 2780 + . gene_id "PABLB_4q28.3"; transcript_id "PABLB_4q28.3"; locus "PABLB_4q28.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0030"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-4113"; repStart "906"; chr4 rmsk exon 130854717 130857092 1349 + . gene_id "PABLB_4q28.3"; transcript_id "PABLB_4q28.3"; locus "PABLB_4q28.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0030"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-1659"; repStart "3206"; chr4 rmsk exon 130857279 130858198 1203 + . gene_id "PABLB_4q28.3"; transcript_id "PABLB_4q28.3"; locus "PABLB_4q28.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0030"; repClass "LTR"; repEnd "6622"; repFamily "ERV1"; repLeft "-500"; repStart "5692"; ### HML3_4q28.3a ### chr4 rmsk gene 130941760 130945512 . + . gene_id "HML3_4q28.3a"; transcript_id "HML3_4q28.3a"; locus "HML3_4q28.3a"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0075"; model_cov "3790"; model_pct "62.9"; chr4 rmsk exon 130941760 130945512 23187 + . gene_id "HML3_4q28.3a"; transcript_id "HML3_4q28.3a"; locus "HML3_4q28.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0075"; repClass "LTR"; repEnd "5294"; repFamily "ERVK"; repLeft "-727"; repStart "1504"; ### HERVH_4q28.3b ### chr4 rmsk gene 130947245 130948070 . + . gene_id "HERVH_4q28.3b"; transcript_id "HERVH_4q28.3b"; locus "HERVH_4q28.3b"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0409"; model_cov "800"; model_pct "10.4"; chr4 rmsk exon 130947245 130947386 1055 + . gene_id "HERVH_4q28.3b"; transcript_id "HERVH_4q28.3b"; locus "HERVH_4q28.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0409"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "-2803"; repStart "4768"; chr4 rmsk exon 130947387 130947659 1399 + . gene_id "HERVH_4q28.3b"; transcript_id "HERVH_4q28.3b"; locus "HERVH_4q28.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0409"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr4 rmsk exon 130947653 130948070 2334 + . gene_id "HERVH_4q28.3b"; transcript_id "HERVH_4q28.3b"; locus "HERVH_4q28.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0409"; repClass "LTR"; repEnd "7546"; repFamily "ERV1"; repLeft "-167"; repStart "7157"; ### MER61_4q28.3a ### chr4 rmsk gene 130996605 130999757 . + . gene_id "MER61_4q28.3a"; transcript_id "MER61_4q28.3a"; locus "MER61_4q28.3a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0129"; model_cov "3718"; model_pct "71.3"; chr4 rmsk exon 130996605 130996897 1224 + . gene_id "MER61_4q28.3a"; transcript_id "MER61_4q28.3a"; locus "MER61_4q28.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0129"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 130996898 130997451 2142 + . gene_id "MER61_4q28.3a"; transcript_id "MER61_4q28.3a"; locus "MER61_4q28.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0129"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "1"; chr4 rmsk exon 130997520 130997566 266 + . gene_id "MER61_4q28.3a"; transcript_id "MER61_4q28.3a"; locus "MER61_4q28.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0129"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "731"; chr4 rmsk exon 130997606 130999757 9700 + . gene_id "MER61_4q28.3a"; transcript_id "MER61_4q28.3a"; locus "MER61_4q28.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0129"; repClass "LTR"; repEnd "4739"; repFamily "ERV1"; repLeft "-478"; repStart "1615"; ### HERVH_4q28.3c ### chr4 rmsk gene 131010089 131012321 . + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0410"; model_cov "1597"; model_pct "20.7"; chr4 rmsk exon 131010089 131010345 877 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "343"; repFamily "ERV1"; repLeft "-107"; repStart "-20"; chr4 rmsk exon 131010346 131010654 2244 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "4839"; repFamily "ERV1"; repLeft "-2874"; repStart "4531"; chr4 rmsk exon 131010642 131010915 1687 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "2828"; repFamily "ERV1"; repLeft "-4885"; repStart "2561"; chr4 rmsk exon 131010914 131011297 2534 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3354"; chr4 rmsk exon 131011291 131011492 1138 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "4166"; repFamily "ERV1"; repLeft "-3547"; repStart "3962"; chr4 rmsk exon 131011486 131011921 2768 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7277"; chr4 rmsk exon 131011922 131012321 2566 + . gene_id "HERVH_4q28.3c"; transcript_id "HERVH_4q28.3c"; locus "HERVH_4q28.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0410"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q28.3g ### chr4 rmsk gene 131193564 131194601 . + . gene_id "ERV316A3_4q28.3g"; transcript_id "ERV316A3_4q28.3g"; locus "ERV316A3_4q28.3g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0825"; model_cov "1068"; model_pct "20.4"; chr4 rmsk exon 131193564 131194601 1670 + . gene_id "ERV316A3_4q28.3g"; transcript_id "ERV316A3_4q28.3g"; locus "ERV316A3_4q28.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0825"; repClass "LTR"; repEnd "3824"; repFamily "ERVL"; repLeft "-1402"; repStart "2756"; ### HUERSP1_4q28.3 ### chr4 rmsk gene 131286850 131291669 . - . gene_id "HUERSP1_4q28.3"; transcript_id "HUERSP1_4q28.3"; locus "HUERSP1_4q28.3"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0065"; model_cov "4545"; model_pct "72.6"; chr4 rmsk exon 131286850 131290697 27140 - . gene_id "HUERSP1_4q28.3"; transcript_id "HUERSP1_4q28.3"; locus "HUERSP1_4q28.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0065"; repClass "LTR"; repEnd "4564"; repFamily "ERV1"; repLeft "814"; repStart "-1699"; chr4 rmsk exon 131290728 131291517 27140 - . gene_id "HUERSP1_4q28.3"; transcript_id "HUERSP1_4q28.3"; locus "HUERSP1_4q28.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0065"; repClass "LTR"; repEnd "813"; repFamily "ERV1"; repLeft "18"; repStart "-5450"; chr4 rmsk exon 131291525 131291669 937 - . gene_id "HUERSP1_4q28.3"; transcript_id "HUERSP1_4q28.3"; locus "HUERSP1_4q28.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0065"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "545"; repStart "0"; ### ERVLE_4q28.3d ### chr4 rmsk gene 131340201 131342220 . - . gene_id "ERVLE_4q28.3d"; transcript_id "ERVLE_4q28.3d"; locus "ERVLE_4q28.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1128"; model_cov "1774"; model_pct "31.3"; chr4 rmsk exon 131340201 131340335 1111 - . gene_id "ERVLE_4q28.3d"; transcript_id "ERVLE_4q28.3d"; locus "ERVLE_4q28.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1128"; repClass "LTR"; repEnd "5450"; repFamily "ERVL"; repLeft "5313"; repStart "-217"; chr4 rmsk exon 131340370 131340907 1111 - . gene_id "ERVLE_4q28.3d"; transcript_id "ERVLE_4q28.3d"; locus "ERVLE_4q28.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1128"; repClass "LTR"; repEnd "5312"; repFamily "ERVL"; repLeft "4781"; repStart "-355"; chr4 rmsk exon 131340972 131341564 884 - . gene_id "ERVLE_4q28.3d"; transcript_id "ERVLE_4q28.3d"; locus "ERVLE_4q28.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1128"; repClass "LTR"; repEnd "3265"; repFamily "ERVL"; repLeft "2657"; repStart "-2402"; chr4 rmsk exon 131341738 131342220 1106 - . gene_id "ERVLE_4q28.3d"; transcript_id "ERVLE_4q28.3d"; locus "ERVLE_4q28.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1128"; repClass "LTR"; repEnd "2394"; repFamily "ERVL"; repLeft "1896"; repStart "-3273"; ### MER4_4q28.3b ### chr4 rmsk gene 131533812 131534290 . - . gene_id "MER4_4q28.3b"; transcript_id "MER4_4q28.3b"; locus "MER4_4q28.3b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0245"; model_cov "729"; model_pct "11.0"; chr4 rmsk exon 131533812 131534290 945 - . gene_id "MER4_4q28.3b"; transcript_id "MER4_4q28.3b"; locus "MER4_4q28.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0245"; repClass "LTR"; repEnd "4147"; repFamily "ERV1"; repLeft "3418"; repStart "-2451"; ### HERVL40_4q28.3d ### chr4 rmsk gene 131568109 131570536 . + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0116"; model_cov "862"; model_pct "15.6"; chr4 rmsk exon 131568109 131568354 555 + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0116"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1240"; repStart "4062"; chr4 rmsk exon 131568606 131568719 262 + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0116"; repClass "LTR"; repEnd "4818"; repFamily "ERVL"; repLeft "-712"; repStart "4694"; chr4 rmsk exon 131568855 131569123 505 + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0116"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-324"; repStart "4946"; chr4 rmsk exon 131569783 131570073 691 + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0116"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "-3"; repStart "5277"; chr4 rmsk exon 131570076 131570536 1077 + . gene_id "HERVL40_4q28.3d"; transcript_id "HERVL40_4q28.3d"; locus "HERVL40_4q28.3d"; repName "LTR40A1"; geneRegion "ltr"; locid "HERVL40-int_0116"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "-81"; repStart "1"; ### HERVL18_4q28.3 ### chr4 rmsk gene 131582965 131584915 . - . gene_id "HERVL18_4q28.3"; transcript_id "HERVL18_4q28.3"; locus "HERVL18_4q28.3"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0050"; model_cov "1639"; model_pct "27.1"; chr4 rmsk exon 131582965 131584533 7361 - . gene_id "HERVL18_4q28.3"; transcript_id "HERVL18_4q28.3"; locus "HERVL18_4q28.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0050"; repClass "LTR"; repEnd "1648"; repFamily "ERVL"; repLeft "9"; repStart "-4399"; chr4 rmsk exon 131584548 131584915 2290 - . gene_id "HERVL18_4q28.3"; transcript_id "HERVL18_4q28.3"; locus "HERVL18_4q28.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0050"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_4q28.3d ### chr4 rmsk gene 131665993 131668842 . + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0411"; model_cov "2382"; model_pct "30.9"; chr4 rmsk exon 131665993 131666383 2345 + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0411"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 131666391 131666507 730 + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0411"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "-4988"; repStart "2613"; chr4 rmsk exon 131666510 131667999 7118 + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0411"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4583"; chr4 rmsk exon 131668019 131668451 2799 + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0411"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr4 rmsk exon 131668452 131668842 2246 + . gene_id "HERVH_4q28.3d"; transcript_id "HERVH_4q28.3d"; locus "HERVH_4q28.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0411"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR25_4q28.3 ### chr4 rmsk gene 131804492 131808659 . - . gene_id "LTR25_4q28.3"; transcript_id "LTR25_4q28.3"; locus "LTR25_4q28.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0037"; model_cov "3441"; model_pct "47.9"; chr4 rmsk exon 131804492 131807243 16982 - . gene_id "LTR25_4q28.3"; transcript_id "LTR25_4q28.3"; locus "LTR25_4q28.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0037"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "4502"; repStart "-2"; chr4 rmsk exon 131807608 131808659 16982 - . gene_id "LTR25_4q28.3"; transcript_id "LTR25_4q28.3"; locus "LTR25_4q28.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0037"; repClass "LTR"; repEnd "4501"; repFamily "ERV1"; repLeft "3744"; repStart "-2687"; ### MER61_4q28.3b ### chr4 rmsk gene 131808660 131810860 . - . gene_id "MER61_4q28.3b"; transcript_id "MER61_4q28.3b"; locus "MER61_4q28.3b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0131"; model_cov "1396"; model_pct "26.8"; chr4 rmsk exon 131808660 131809005 2991 - . gene_id "MER61_4q28.3b"; transcript_id "MER61_4q28.3b"; locus "MER61_4q28.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0131"; repClass "LTR"; repEnd "4912"; repFamily "ERV1"; repLeft "4865"; repStart "-305"; chr4 rmsk exon 131809328 131809955 2991 - . gene_id "MER61_4q28.3b"; transcript_id "MER61_4q28.3b"; locus "MER61_4q28.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0131"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "4206"; repStart "-353"; chr4 rmsk exon 131809946 131810459 928 - . gene_id "MER61_4q28.3b"; transcript_id "MER61_4q28.3b"; locus "MER61_4q28.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0131"; repClass "LTR"; repEnd "-988"; repFamily "ERV1"; repLeft "-1679"; repStart "-6205"; chr4 rmsk exon 131810460 131810860 2578 - . gene_id "MER61_4q28.3b"; transcript_id "MER61_4q28.3b"; locus "MER61_4q28.3b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0131"; repClass "LTR"; repEnd "401"; repFamily "ERV1"; repLeft "1"; repStart "-100"; ### HERVL_4q28.3a ### chr4 rmsk gene 132084194 132094327 . - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0419"; model_cov "5657"; model_pct "100.0"; chr4 rmsk exon 132084194 132084738 1608 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr4 rmsk exon 132084739 132087194 20080 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3154"; repStart "0"; chr4 rmsk exon 132087562 132087971 20080 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "2730"; repStart "-2501"; chr4 rmsk exon 132090297 132090408 19019 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "2736"; repFamily "ERVL"; repLeft "2629"; repStart "-2918"; chr4 rmsk exon 132091165 132093778 19019 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "2628"; repFamily "ERVL"; repLeft "1"; repStart "-3026"; chr4 rmsk exon 132093779 132094327 1645 - . gene_id "HERVL_4q28.3a"; transcript_id "HERVL_4q28.3a"; locus "HERVL_4q28.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0419"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HERVL_4q28.3b ### chr4 rmsk gene 132110529 132114957 . - . gene_id "HERVL_4q28.3b"; transcript_id "HERVL_4q28.3b"; locus "HERVL_4q28.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0420"; model_cov "3963"; model_pct "70.1"; chr4 rmsk exon 132110529 132114391 20706 - . gene_id "HERVL_4q28.3b"; transcript_id "HERVL_4q28.3b"; locus "HERVL_4q28.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0420"; repClass "LTR"; repEnd "3964"; repFamily "ERVL"; repLeft "1"; repStart "-1690"; chr4 rmsk exon 132114392 132114460 232 - . gene_id "HERVL_4q28.3b"; transcript_id "HERVL_4q28.3b"; locus "HERVL_4q28.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0420"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr4 rmsk exon 132114556 132114957 2526 - . gene_id "HERVL_4q28.3b"; transcript_id "HERVL_4q28.3b"; locus "HERVL_4q28.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0420"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "3"; repStart "-31"; ### HERVH_4q28.3e ### chr4 rmsk gene 132118178 132123891 . + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0412"; model_cov "5059"; model_pct "65.6"; chr4 rmsk exon 132118178 132118590 2549 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 132118593 132121737 20049 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr4 rmsk exon 132121728 132122229 3302 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 132122232 132122885 4026 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 132122887 132123102 1337 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 132123103 132123480 2461 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 132123481 132123891 2802 + . gene_id "HERVH_4q28.3e"; transcript_id "HERVH_4q28.3e"; locus "HERVH_4q28.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0412"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_4q28.3e ### chr4 rmsk gene 132171031 132172747 . + . gene_id "ERVLE_4q28.3e"; transcript_id "ERVLE_4q28.3e"; locus "ERVLE_4q28.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1129"; model_cov "1206"; model_pct "21.3"; chr4 rmsk exon 132171031 132171402 382 + . gene_id "ERVLE_4q28.3e"; transcript_id "ERVLE_4q28.3e"; locus "ERVLE_4q28.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1129"; repClass "LTR"; repEnd "4222"; repFamily "ERVL"; repLeft "-1445"; repStart "3843"; chr4 rmsk exon 132171443 132172002 624 + . gene_id "ERVLE_4q28.3e"; transcript_id "ERVLE_4q28.3e"; locus "ERVLE_4q28.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1129"; repClass "LTR"; repEnd "4568"; repFamily "ERVL"; repLeft "-1099"; repStart "3994"; chr4 rmsk exon 132172304 132172393 624 + . gene_id "ERVLE_4q28.3e"; transcript_id "ERVLE_4q28.3e"; locus "ERVLE_4q28.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1129"; repClass "LTR"; repEnd "4654"; repFamily "ERVL"; repLeft "-1013"; repStart "4569"; chr4 rmsk exon 132172601 132172747 304 + . gene_id "ERVLE_4q28.3e"; transcript_id "ERVLE_4q28.3e"; locus "ERVLE_4q28.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1129"; repClass "LTR"; repEnd "5083"; repFamily "ERVL"; repLeft "-584"; repStart "4915"; ### ERVLE_4q28.3f ### chr4 rmsk gene 132213318 132219024 . + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1130"; model_cov "2886"; model_pct "50.9"; chr4 rmsk exon 132213318 132213796 257 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "2239"; repFamily "ERVL"; repLeft "-3428"; repStart "1768"; chr4 rmsk exon 132214053 132214366 345 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "2531"; repFamily "ERVL"; repLeft "-3136"; repStart "2210"; chr4 rmsk exon 132214531 132215066 1075 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "2937"; repFamily "ERVL"; repLeft "-2730"; repStart "2405"; chr4 rmsk exon 132216238 132216793 4051 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-1011"; repStart "4100"; chr4 rmsk exon 132217106 132218107 4051 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "-4"; repStart "4657"; chr4 rmsk exon 132218400 132219024 1142 + . gene_id "ERVLE_4q28.3f"; transcript_id "ERVLE_4q28.3f"; locus "ERVLE_4q28.3f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1130"; repClass "LTR"; repEnd "592"; repFamily "ERVL"; repLeft "-71"; repStart "3"; ### HERVL_4q28.3c ### chr4 rmsk gene 132351062 132357402 . - . gene_id "HERVL_4q28.3c"; transcript_id "HERVL_4q28.3c"; locus "HERVL_4q28.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0421"; model_cov "5653"; model_pct "100.0"; chr4 rmsk exon 132351062 132351456 2819 - . gene_id "HERVL_4q28.3c"; transcript_id "HERVL_4q28.3c"; locus "HERVL_4q28.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0421"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; chr4 rmsk exon 132351457 132357078 42150 - . gene_id "HERVL_4q28.3c"; transcript_id "HERVL_4q28.3c"; locus "HERVL_4q28.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0421"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 132357079 132357402 2070 - . gene_id "HERVL_4q28.3c"; transcript_id "HERVL_4q28.3c"; locus "HERVL_4q28.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0421"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "122"; repStart "0"; ### ERVLB4_4q28.3b ### chr4 rmsk gene 132518257 132522822 . - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0519"; model_cov "3754"; model_pct "65.7"; chr4 rmsk exon 132518257 132518346 9947 - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0519"; repClass "LTR"; repEnd "5695"; repFamily "ERVL"; repLeft "5605"; repStart "-19"; chr4 rmsk exon 132518610 132521065 9947 - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0519"; repClass "LTR"; repEnd "5604"; repFamily "ERVL"; repLeft "3033"; repStart "-110"; chr4 rmsk exon 132521254 132521891 2117 - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0519"; repClass "LTR"; repEnd "1459"; repFamily "ERVL"; repLeft "821"; repStart "-4255"; chr4 rmsk exon 132521885 132522293 969 - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0519"; repClass "LTR"; repEnd "576"; repFamily "ERVL"; repLeft "121"; repStart "-5138"; chr4 rmsk exon 132522689 132522822 720 - . gene_id "ERVLB4_4q28.3b"; transcript_id "ERVLB4_4q28.3b"; locus "ERVLB4_4q28.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0519"; repClass "LTR"; repEnd "134"; repFamily "ERVL"; repLeft "1"; repStart "-263"; ### HERVFRD_4q28.3 ### chr4 rmsk gene 132540490 132547289 . + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0060"; model_cov "5594"; model_pct "77.6"; chr4 rmsk exon 132540490 132540571 541 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0060"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "626"; chr4 rmsk exon 132540573 132541161 2463 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-6514"; repStart "1"; chr4 rmsk exon 132541266 132542215 3976 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "796"; chr4 rmsk exon 132542208 132543296 4971 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "3857"; repFamily "ERV1"; repLeft "-3348"; repStart "2784"; chr4 rmsk exon 132543293 132543586 1725 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "4868"; repFamily "ERV1"; repLeft "-2337"; repStart "4568"; chr4 rmsk exon 132543585 132544469 3014 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "6398"; repFamily "ERV1"; repLeft "-807"; repStart "5443"; chr4 rmsk exon 132545663 132546538 3209 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0060"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "5675"; chr4 rmsk exon 132546539 132547289 3044 + . gene_id "HERVFRD_4q28.3"; transcript_id "HERVFRD_4q28.3"; locus "HERVFRD_4q28.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0060"; repClass "LTR"; repEnd "715"; repFamily "ERV1"; repLeft "-19"; repStart "1"; ### ERV316A3_4q28.3h ### chr4 rmsk gene 132607317 132609113 . - . gene_id "ERV316A3_4q28.3h"; transcript_id "ERV316A3_4q28.3h"; locus "ERV316A3_4q28.3h"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0827"; model_cov "834"; model_pct "16.0"; chr4 rmsk exon 132607317 132607419 390 - . gene_id "ERV316A3_4q28.3h"; transcript_id "ERV316A3_4q28.3h"; locus "ERV316A3_4q28.3h"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0827"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "361"; repStart "-2"; chr4 rmsk exon 132607554 132607819 924 - . gene_id "ERV316A3_4q28.3h"; transcript_id "ERV316A3_4q28.3h"; locus "ERV316A3_4q28.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0827"; repClass "LTR"; repEnd "3783"; repFamily "ERVL"; repLeft "3520"; repStart "-1443"; chr4 rmsk exon 132607819 132608372 784 - . gene_id "ERV316A3_4q28.3h"; transcript_id "ERV316A3_4q28.3h"; locus "ERV316A3_4q28.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0827"; repClass "LTR"; repEnd "576"; repFamily "ERVL"; repLeft "5"; repStart "-4650"; chr4 rmsk exon 132608742 132609113 992 - . gene_id "ERV316A3_4q28.3h"; transcript_id "ERV316A3_4q28.3h"; locus "ERV316A3_4q28.3h"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0827"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-88"; ### HERVIP10FH_4q28.3 ### chr4 rmsk gene 132812610 132818873 . - . gene_id "HERVIP10FH_4q28.3"; transcript_id "HERVIP10FH_4q28.3"; locus "HERVIP10FH_4q28.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0052"; model_cov "5100"; model_pct "100.0"; chr4 rmsk exon 132812610 132813083 3198 - . gene_id "HERVIP10FH_4q28.3"; transcript_id "HERVIP10FH_4q28.3"; locus "HERVIP10FH_4q28.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0052"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 132813084 132816992 38537 - . gene_id "HERVIP10FH_4q28.3"; transcript_id "HERVIP10FH_4q28.3"; locus "HERVIP10FH_4q28.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0052"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1190"; repStart "0"; chr4 rmsk exon 132817300 132818427 38537 - . gene_id "HERVIP10FH_4q28.3"; transcript_id "HERVIP10FH_4q28.3"; locus "HERVIP10FH_4q28.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0052"; repClass "LTR"; repEnd "1189"; repFamily "ERV1"; repLeft "1"; repStart "-3913"; chr4 rmsk exon 132818428 132818873 3062 - . gene_id "HERVIP10FH_4q28.3"; transcript_id "HERVIP10FH_4q28.3"; locus "HERVIP10FH_4q28.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0052"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_4q28.3 ### chr4 rmsk gene 132882300 132889138 . + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0105"; model_cov "5912"; model_pct "68.5"; chr4 rmsk exon 132882300 132882799 3600 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "260"; chr4 rmsk exon 132882800 132883518 5459 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-7919"; repStart "1"; chr4 rmsk exon 132883679 132884944 9516 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "-6619"; repStart "763"; chr4 rmsk exon 132884937 132888341 27377 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "-2724"; repStart "2430"; chr4 rmsk exon 132888333 132888495 1274 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "6985"; chr4 rmsk exon 132888492 132888530 306 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 132888522 132888812 2306 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8336"; chr4 rmsk exon 132888813 132889138 2322 + . gene_id "HERVW_4q28.3"; transcript_id "HERVW_4q28.3"; locus "HERVW_4q28.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0105"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### MER4_4q28.3c ### chr4 rmsk gene 133257232 133260696 . - . gene_id "MER4_4q28.3c"; transcript_id "MER4_4q28.3c"; locus "MER4_4q28.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0246"; model_cov "4613"; model_pct "69.9"; chr4 rmsk exon 133257232 133257454 1346 - . gene_id "MER4_4q28.3c"; transcript_id "MER4_4q28.3c"; locus "MER4_4q28.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0246"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "246"; repStart "0"; chr4 rmsk exon 133257458 133257546 539 - . gene_id "MER4_4q28.3c"; transcript_id "MER4_4q28.3c"; locus "MER4_4q28.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0246"; repClass "LTR"; repEnd "142"; repFamily "ERV1"; repLeft "55"; repStart "-330"; chr4 rmsk exon 133257582 133260696 15226 - . gene_id "MER4_4q28.3c"; transcript_id "MER4_4q28.3c"; locus "MER4_4q28.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0246"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "1983"; repStart "-2"; ### MER4_4q28.3d ### chr4 rmsk gene 133260936 133263404 . - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0247"; model_cov "1851"; model_pct "28.1"; chr4 rmsk exon 133260936 133261606 15226 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0247"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5601"; repStart "-2"; chr4 rmsk exon 133261952 133262276 1150 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0247"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "2086"; repStart "-4272"; chr4 rmsk exon 133262275 133262325 307 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0247"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; chr4 rmsk exon 133262404 133262465 372 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0247"; repClass "LTR"; repEnd "-662"; repFamily "ERV1"; repLeft "-723"; repStart "-7260"; chr4 rmsk exon 133262454 133263000 2557 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0247"; repClass "LTR"; repEnd "-1166"; repFamily "ERV1"; repLeft "-1671"; repStart "-7764"; chr4 rmsk exon 133263004 133263404 1926 - . gene_id "MER4_4q28.3d"; transcript_id "MER4_4q28.3d"; locus "MER4_4q28.3d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0247"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_4q28.3f ### chr4 rmsk gene 133263579 133268907 . - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0413"; model_cov "4629"; model_pct "60.0"; chr4 rmsk exon 133263579 133263960 2521 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "1"; repStart "-17"; chr4 rmsk exon 133263961 133264336 2332 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 133264337 133264532 1325 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5624"; repStart "-1894"; chr4 rmsk exon 133264569 133265181 3919 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 133265184 133268426 20933 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "609"; repStart "-3720"; chr4 rmsk exon 133268509 133268907 2666 - . gene_id "HERVH_4q28.3f"; transcript_id "HERVH_4q28.3f"; locus "HERVH_4q28.3f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0413"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_4q28.3i ### chr4 rmsk gene 133398222 133402988 . - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0830"; model_cov "3548"; model_pct "67.9"; chr4 rmsk exon 133398222 133398647 927 - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0830"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr4 rmsk exon 133398648 133400206 3294 - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0830"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3652"; repStart "0"; chr4 rmsk exon 133400631 133401455 1816 - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0830"; repClass "LTR"; repEnd "2424"; repFamily "ERVL"; repLeft "1606"; repStart "-2802"; chr4 rmsk exon 133401511 133402562 1003 - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0830"; repClass "LTR"; repEnd "1409"; repFamily "ERVL"; repLeft "253"; repStart "-3817"; chr4 rmsk exon 133402588 133402988 1159 - . gene_id "ERV316A3_4q28.3i"; transcript_id "ERV316A3_4q28.3i"; locus "ERV316A3_4q28.3i"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0830"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "1"; repStart "-50"; ### ERV316A3_4q28.3j ### chr4 rmsk gene 133454272 133460907 . + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0831"; model_cov "4714"; model_pct "90.2"; chr4 rmsk exon 133454272 133454562 778 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-147"; repStart "6"; chr4 rmsk exon 133454560 133454708 473 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-53"; repStart "243"; chr4 rmsk exon 133454802 133456500 3137 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "1756"; repFamily "ERVL"; repLeft "-3470"; repStart "2"; chr4 rmsk exon 133456809 133457303 3137 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "2294"; repFamily "ERVL"; repLeft "-2932"; repStart "1757"; chr4 rmsk exon 133457385 133458110 3137 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "-2140"; repStart "2295"; chr4 rmsk exon 133458828 133459872 2656 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "4383"; repFamily "ERVL"; repLeft "-843"; repStart "3290"; chr4 rmsk exon 133459898 133460425 1224 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-51"; repStart "4636"; chr4 rmsk exon 133460540 133460907 1143 + . gene_id "ERV316A3_4q28.3j"; transcript_id "ERV316A3_4q28.3j"; locus "ERV316A3_4q28.3j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0831"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "73"; ### HERVH_4q28.3g ### chr4 rmsk gene 133531332 133534636 . - . gene_id "HERVH_4q28.3g"; transcript_id "HERVH_4q28.3g"; locus "HERVH_4q28.3g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0414"; model_cov "3021"; model_pct "39.2"; chr4 rmsk exon 133531332 133531491 1052 - . gene_id "HERVH_4q28.3g"; transcript_id "HERVH_4q28.3g"; locus "HERVH_4q28.3g"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_0414"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "293"; repStart "0"; chr4 rmsk exon 133531492 133531683 1378 - . gene_id "HERVH_4q28.3g"; transcript_id "HERVH_4q28.3g"; locus "HERVH_4q28.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0414"; repClass "LTR"; repEnd "3549"; repFamily "ERV1"; repLeft "3357"; repStart "-4164"; chr4 rmsk exon 133531684 133534204 12606 - . gene_id "HERVH_4q28.3g"; transcript_id "HERVH_4q28.3g"; locus "HERVH_4q28.3g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0414"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chr4 rmsk exon 133534207 133534636 2300 - . gene_id "HERVH_4q28.3g"; transcript_id "HERVH_4q28.3g"; locus "HERVH_4q28.3g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0414"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HERVL_4q28.3d ### chr4 rmsk gene 133603940 133609118 . - . gene_id "HERVL_4q28.3d"; transcript_id "HERVL_4q28.3d"; locus "HERVL_4q28.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0423"; model_cov "4739"; model_pct "83.8"; chr4 rmsk exon 133603940 133604908 7707 - . gene_id "HERVL_4q28.3d"; transcript_id "HERVL_4q28.3d"; locus "HERVL_4q28.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0423"; repClass "LTR"; repEnd "5449"; repFamily "ERVL"; repLeft "4483"; repStart "-205"; chr4 rmsk exon 133604903 133608675 28638 - . gene_id "HERVL_4q28.3d"; transcript_id "HERVL_4q28.3d"; locus "HERVL_4q28.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0423"; repClass "LTR"; repEnd "3774"; repFamily "ERVL"; repLeft "1"; repStart "-1880"; chr4 rmsk exon 133608676 133609118 3191 - . gene_id "HERVL_4q28.3d"; transcript_id "HERVL_4q28.3d"; locus "HERVL_4q28.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0423"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_4q28.3e ### chr4 rmsk gene 133825042 133826770 . + . gene_id "HERVL_4q28.3e"; transcript_id "HERVL_4q28.3e"; locus "HERVL_4q28.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0424"; model_cov "1228"; model_pct "21.7"; chr4 rmsk exon 133825042 133826260 8645 + . gene_id "HERVL_4q28.3e"; transcript_id "HERVL_4q28.3e"; locus "HERVL_4q28.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0424"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4426"; chr4 rmsk exon 133826261 133826770 2813 + . gene_id "HERVL_4q28.3e"; transcript_id "HERVL_4q28.3e"; locus "HERVL_4q28.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0424"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4q28.3g ### chr4 rmsk gene 133920742 133922371 . - . gene_id "ERVLE_4q28.3g"; transcript_id "ERVLE_4q28.3g"; locus "ERVLE_4q28.3g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1135"; model_cov "1139"; model_pct "20.1"; chr4 rmsk exon 133920742 133920884 423 - . gene_id "ERVLE_4q28.3g"; transcript_id "ERVLE_4q28.3g"; locus "ERVLE_4q28.3g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1135"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "507"; repStart "-2"; chr4 rmsk exon 133920892 133921539 3935 - . gene_id "ERVLE_4q28.3g"; transcript_id "ERVLE_4q28.3g"; locus "ERVLE_4q28.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1135"; repClass "LTR"; repEnd "5185"; repFamily "ERVL"; repLeft "4500"; repStart "-482"; chr4 rmsk exon 133921924 133922371 3935 - . gene_id "ERVLE_4q28.3g"; transcript_id "ERVLE_4q28.3g"; locus "ERVLE_4q28.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1135"; repClass "LTR"; repEnd "4499"; repFamily "ERVL"; repLeft "4045"; repStart "-1168"; ### HERVP71A_4q28.3 ### chr4 rmsk gene 133947016 133954688 . - . gene_id "HERVP71A_4q28.3"; transcript_id "HERVP71A_4q28.3"; locus "HERVP71A_4q28.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0022"; model_cov "7023"; model_pct "92.5"; chr4 rmsk exon 133947016 133947604 3688 - . gene_id "HERVP71A_4q28.3"; transcript_id "HERVP71A_4q28.3"; locus "HERVP71A_4q28.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0022"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 133947639 133951090 41453 - . gene_id "HERVP71A_4q28.3"; transcript_id "HERVP71A_4q28.3"; locus "HERVP71A_4q28.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0022"; repClass "LTR"; repEnd "7446"; repFamily "ERV1"; repLeft "3956"; repStart "-144"; chr4 rmsk exon 133951122 133954688 41453 - . gene_id "HERVP71A_4q28.3"; transcript_id "HERVP71A_4q28.3"; locus "HERVP71A_4q28.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0022"; repClass "LTR"; repEnd "3955"; repFamily "ERV1"; repLeft "422"; repStart "-3635"; ### ERV316A3_4q28.3k ### chr4 rmsk gene 133972382 133978323 . + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0833"; model_cov "1450"; model_pct "27.7"; chr4 rmsk exon 133972382 133972544 431 + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0833"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "-279"; repStart "1"; chr4 rmsk exon 133972559 133973240 737 + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0833"; repClass "LTR"; repEnd "1678"; repFamily "ERVL"; repLeft "-3548"; repStart "1032"; chr4 rmsk exon 133975565 133975918 619 + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0833"; repClass "LTR"; repEnd "2474"; repFamily "ERVL"; repLeft "-2752"; repStart "2121"; chr4 rmsk exon 133977723 133978055 639 + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0833"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "-2285"; repStart "2618"; chr4 rmsk exon 133978202 133978323 339 + . gene_id "ERV316A3_4q28.3k"; transcript_id "ERV316A3_4q28.3k"; locus "ERV316A3_4q28.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0833"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4938"; ### HML5_4q28.3a ### chr4 rmsk gene 133990481 133997108 . - . gene_id "HML5_4q28.3a"; transcript_id "HML5_4q28.3a"; locus "HML5_4q28.3a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0035"; model_cov "5730"; model_pct "83.8"; chr4 rmsk exon 133990481 133990983 3076 - . gene_id "HML5_4q28.3a"; transcript_id "HML5_4q28.3a"; locus "HML5_4q28.3a"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0035"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "4"; repStart "0"; chr4 rmsk exon 133991005 133994066 22893 - . gene_id "HML5_4q28.3a"; transcript_id "HML5_4q28.3a"; locus "HML5_4q28.3a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0035"; repClass "LTR"; repEnd "6829"; repFamily "ERVK"; repLeft "3764"; repStart "-8"; chr4 rmsk exon 133994046 133996649 18590 - . gene_id "HML5_4q28.3a"; transcript_id "HML5_4q28.3a"; locus "HML5_4q28.3a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0035"; repClass "LTR"; repEnd "2666"; repFamily "ERVK"; repLeft "1"; repStart "-4171"; chr4 rmsk exon 133996655 133997108 2669 - . gene_id "HML5_4q28.3a"; transcript_id "HML5_4q28.3a"; locus "HML5_4q28.3a"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0035"; repClass "LTR"; repEnd "505"; repFamily "ERVK"; repLeft "1"; repStart "-2"; ### HERVH_4q28.3h ### chr4 rmsk gene 134012212 134018380 . + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0415"; model_cov "5403"; model_pct "70.1"; chr4 rmsk exon 134012212 134012620 2831 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 134012623 134015569 19601 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 134015564 134015711 913 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 134015702 134017380 8694 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3492"; chr4 rmsk exon 134017382 134017596 1343 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 134017595 134017973 2484 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 134017974 134018380 2734 + . gene_id "HERVH_4q28.3h"; transcript_id "HERVH_4q28.3h"; locus "HERVH_4q28.3h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0415"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL40_4q28.3e ### chr4 rmsk gene 134207186 134207753 . + . gene_id "HERVL40_4q28.3e"; transcript_id "HERVL40_4q28.3e"; locus "HERVL40_4q28.3e"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0117"; model_cov "592"; model_pct "10.7"; chr4 rmsk exon 134207186 134207377 513 + . gene_id "HERVL40_4q28.3e"; transcript_id "HERVL40_4q28.3e"; locus "HERVL40_4q28.3e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0117"; repClass "LTR"; repEnd "3480"; repFamily "ERVL"; repLeft "-2050"; repStart "3270"; chr4 rmsk exon 134207382 134207753 1058 + . gene_id "HERVL40_4q28.3e"; transcript_id "HERVL40_4q28.3e"; locus "HERVL40_4q28.3e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0117"; repClass "LTR"; repEnd "3966"; repFamily "ERVL"; repLeft "-1564"; repStart "3584"; ### HERVL40_4q28.3f ### chr4 rmsk gene 134550229 134551739 . - . gene_id "HERVL40_4q28.3f"; transcript_id "HERVL40_4q28.3f"; locus "HERVL40_4q28.3f"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0119"; model_cov "826"; model_pct "14.9"; chr4 rmsk exon 134550229 134550325 294 - . gene_id "HERVL40_4q28.3f"; transcript_id "HERVL40_4q28.3f"; locus "HERVL40_4q28.3f"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0119"; repClass "LTR"; repEnd "2616"; repFamily "ERVL"; repLeft "2522"; repStart "-2914"; chr4 rmsk exon 134550648 134551307 1244 - . gene_id "HERVL40_4q28.3f"; transcript_id "HERVL40_4q28.3f"; locus "HERVL40_4q28.3f"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0119"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "936"; repStart "-3919"; chr4 rmsk exon 134551548 134551606 365 - . gene_id "HERVL40_4q28.3f"; transcript_id "HERVL40_4q28.3f"; locus "HERVL40_4q28.3f"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0119"; repClass "LTR"; repEnd "78"; repFamily "ERVL"; repLeft "21"; repStart "-5452"; chr4 rmsk exon 134551624 134551739 507 - . gene_id "HERVL40_4q28.3f"; transcript_id "HERVL40_4q28.3f"; locus "HERVL40_4q28.3f"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0119"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "360"; repStart "-12"; ### HERVH_4q28.3i ### chr4 rmsk gene 134677937 134683552 . - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0416"; model_cov "4903"; model_pct "63.6"; chr4 rmsk exon 134677937 134678346 2765 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 134678347 134678724 2324 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 134678723 134678939 1375 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 134678944 134679604 4396 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr4 rmsk exon 134679607 134680109 3506 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 134680100 134680247 876 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 134680244 134683143 19268 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr4 rmsk exon 134683146 134683552 2587 - . gene_id "HERVH_4q28.3i"; transcript_id "HERVH_4q28.3i"; locus "HERVH_4q28.3i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0416"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_4q28.3c ### chr4 rmsk gene 134767916 134776241 . - . gene_id "ERVLB4_4q28.3c"; transcript_id "ERVLB4_4q28.3c"; locus "ERVLB4_4q28.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0522"; model_cov "5710"; model_pct "99.9"; chr4 rmsk exon 134767916 134768424 1715 - . gene_id "ERVLB4_4q28.3c"; transcript_id "ERVLB4_4q28.3c"; locus "ERVLB4_4q28.3c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0522"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 134768425 134772433 21795 - . gene_id "ERVLB4_4q28.3c"; transcript_id "ERVLB4_4q28.3c"; locus "ERVLB4_4q28.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0522"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "1654"; repStart "0"; chr4 rmsk exon 134772713 134773249 2654 - . gene_id "ERVLB4_4q28.3c"; transcript_id "ERVLB4_4q28.3c"; locus "ERVLB4_4q28.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0522"; repClass "LTR"; repEnd "1659"; repFamily "ERVL"; repLeft "1133"; repStart "-4055"; chr4 rmsk exon 134775191 134776241 3615 - . gene_id "ERVLB4_4q28.3c"; transcript_id "ERVLB4_4q28.3c"; locus "ERVLB4_4q28.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0522"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "1"; repStart "-4589"; ### HERVL_4q28.3f ### chr4 rmsk gene 135035959 135042814 . + . gene_id "HERVL_4q28.3f"; transcript_id "HERVL_4q28.3f"; locus "HERVL_4q28.3f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0426"; model_cov "5467"; model_pct "96.7"; chr4 rmsk exon 135035959 135036341 2560 + . gene_id "HERVL_4q28.3f"; transcript_id "HERVL_4q28.3f"; locus "HERVL_4q28.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0426"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "3"; chr4 rmsk exon 135036393 135039543 40048 + . gene_id "HERVL_4q28.3f"; transcript_id "HERVL_4q28.3f"; locus "HERVL_4q28.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0426"; repClass "LTR"; repEnd "3313"; repFamily "ERVL"; repLeft "-2341"; repStart "186"; chr4 rmsk exon 135040039 135042369 40048 + . gene_id "HERVL_4q28.3f"; transcript_id "HERVL_4q28.3f"; locus "HERVL_4q28.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0426"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3314"; chr4 rmsk exon 135042370 135042814 2961 + . gene_id "HERVL_4q28.3f"; transcript_id "HERVL_4q28.3f"; locus "HERVL_4q28.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0426"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL74_4q28.3a ### chr4 rmsk gene 135085466 135086015 . - . gene_id "HERVL74_4q28.3a"; transcript_id "HERVL74_4q28.3a"; locus "HERVL74_4q28.3a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0024"; model_cov "577"; model_pct "10.1"; chr4 rmsk exon 135085466 135086015 2029 - . gene_id "HERVL74_4q28.3a"; transcript_id "HERVL74_4q28.3a"; locus "HERVL74_4q28.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0024"; repClass "LTR"; repEnd "1941"; repFamily "ERVL"; repLeft "1364"; repStart "-3744"; ### HERVH_4q28.3j ### chr4 rmsk gene 135167435 135173118 . - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0418"; model_cov "4809"; model_pct "62.3"; chr4 rmsk exon 135167435 135167866 2669 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 135167867 135168246 2575 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 135168245 135168409 972 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5654"; repStart "-1894"; chr4 rmsk exon 135168437 135168994 2587 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "5104"; repFamily "ERV1"; repLeft "4488"; repStart "-2609"; chr4 rmsk exon 135168997 135169499 3478 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 135169490 135169634 865 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 135169629 135172686 19997 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 135172689 135173118 2526 - . gene_id "HERVH_4q28.3j"; transcript_id "HERVH_4q28.3j"; locus "HERVH_4q28.3j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0418"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_4q28.3g ### chr4 rmsk gene 135205875 135208999 . + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0427"; model_cov "2134"; model_pct "37.7"; chr4 rmsk exon 135205875 135206041 255 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "-4844"; repStart "635"; chr4 rmsk exon 135206232 135206495 505 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "1895"; repFamily "ERVL"; repLeft "-3759"; repStart "1627"; chr4 rmsk exon 135206896 135207121 586 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "-2977"; repStart "2451"; chr4 rmsk exon 135207435 135208140 765 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "-2089"; repStart "2787"; chr4 rmsk exon 135208193 135208431 438 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "4165"; repFamily "ERVL"; repLeft "-1489"; repStart "3923"; chr4 rmsk exon 135208556 135208999 1035 + . gene_id "HERVL_4q28.3g"; transcript_id "HERVL_4q28.3g"; locus "HERVL_4q28.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0427"; repClass "LTR"; repEnd "4549"; repFamily "ERVL"; repLeft "-1105"; repStart "4104"; ### ERVLB4_4q28.3d ### chr4 rmsk gene 135266682 135269351 . - . gene_id "ERVLB4_4q28.3d"; transcript_id "ERVLB4_4q28.3d"; locus "ERVLB4_4q28.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0523"; model_cov "1690"; model_pct "29.6"; chr4 rmsk exon 135266682 135266942 762 - . gene_id "ERVLB4_4q28.3d"; transcript_id "ERVLB4_4q28.3d"; locus "ERVLB4_4q28.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0523"; repClass "LTR"; repEnd "3977"; repFamily "ERVL"; repLeft "3711"; repStart "-1737"; chr4 rmsk exon 135267536 135267931 829 - . gene_id "ERVLB4_4q28.3d"; transcript_id "ERVLB4_4q28.3d"; locus "ERVLB4_4q28.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0523"; repClass "LTR"; repEnd "3275"; repFamily "ERVL"; repLeft "2877"; repStart "-2439"; chr4 rmsk exon 135268310 135268863 1223 - . gene_id "ERVLB4_4q28.3d"; transcript_id "ERVLB4_4q28.3d"; locus "ERVLB4_4q28.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0523"; repClass "LTR"; repEnd "2440"; repFamily "ERVL"; repLeft "1846"; repStart "-3274"; chr4 rmsk exon 135268921 135269351 514 - . gene_id "ERVLB4_4q28.3d"; transcript_id "ERVLB4_4q28.3d"; locus "ERVLB4_4q28.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0523"; repClass "LTR"; repEnd "1740"; repFamily "ERVL"; repLeft "1308"; repStart "-3974"; ### ERV316A3_4q28.3l ### chr4 rmsk gene 135277118 135278526 . + . gene_id "ERV316A3_4q28.3l"; transcript_id "ERV316A3_4q28.3l"; locus "ERV316A3_4q28.3l"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0835"; model_cov "763"; model_pct "14.6"; chr4 rmsk exon 135277118 135277625 513 + . gene_id "ERV316A3_4q28.3l"; transcript_id "ERV316A3_4q28.3l"; locus "ERV316A3_4q28.3l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0835"; repClass "LTR"; repEnd "3926"; repFamily "ERVL"; repLeft "-1300"; repStart "3404"; chr4 rmsk exon 135277880 135278110 317 + . gene_id "ERV316A3_4q28.3l"; transcript_id "ERV316A3_4q28.3l"; locus "ERV316A3_4q28.3l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0835"; repClass "LTR"; repEnd "4167"; repFamily "ERVL"; repLeft "-1059"; repStart "3926"; chr4 rmsk exon 135278143 135278352 385 + . gene_id "ERV316A3_4q28.3l"; transcript_id "ERV316A3_4q28.3l"; locus "ERV316A3_4q28.3l"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0835"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "-259"; repStart "4"; chr4 rmsk exon 135278411 135278526 363 + . gene_id "ERV316A3_4q28.3l"; transcript_id "ERV316A3_4q28.3l"; locus "ERV316A3_4q28.3l"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0835"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-31"; repStart "337"; ### HERVL_4q28.3h ### chr4 rmsk gene 135403948 135405859 . + . gene_id "HERVL_4q28.3h"; transcript_id "HERVL_4q28.3h"; locus "HERVL_4q28.3h"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0428"; model_cov "1514"; model_pct "26.8"; chr4 rmsk exon 135403948 135404388 3399 + . gene_id "HERVL_4q28.3h"; transcript_id "HERVL_4q28.3h"; locus "HERVL_4q28.3h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0428"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr4 rmsk exon 135404390 135405859 10880 + . gene_id "HERVL_4q28.3h"; transcript_id "HERVL_4q28.3h"; locus "HERVL_4q28.3h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0428"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "-4139"; repStart "1"; ### HML5_4q28.3b ### chr4 rmsk gene 135405860 135412500 . + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; category "unknown"; intModel "HERVK22-int"; locid "HERVK22-int_0036"; model_cov "3519"; model_pct "51.5"; chr4 rmsk exon 135405860 135406324 1987 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "508"; repFamily "ERVK"; repLeft "-18"; repStart "1"; chr4 rmsk exon 135406325 135406435 1481 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "607"; repFamily "ERVK"; repLeft "-6230"; repStart "497"; chr4 rmsk exon 135407961 135408111 1481 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "754"; repFamily "ERVK"; repLeft "-6083"; repStart "608"; chr4 rmsk exon 135408542 135408659 454 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "2476"; repFamily "ERVK"; repLeft "-4361"; repStart "2327"; chr4 rmsk exon 135408656 135409236 3991 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "4307"; repFamily "ERVK"; repLeft "-2530"; repStart "3719"; chr4 rmsk exon 135409243 135409492 1071 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "260"; repFamily "ERVK"; repLeft "-236"; repStart "1"; chr4 rmsk exon 135409493 135412022 18644 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "4311"; chr4 rmsk exon 135412025 135412500 2252 + . gene_id "HML5_4q28.3b"; transcript_id "HML5_4q28.3b"; locus "HML5_4q28.3b"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0036"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "3"; ### HERVL_4q28.3i ### chr4 rmsk gene 135412501 135417188 . + . gene_id "HERVL_4q28.3i"; transcript_id "HERVL_4q28.3i"; locus "HERVL_4q28.3i"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0429"; model_cov "4143"; model_pct "73.3"; chr4 rmsk exon 135412501 135416622 31222 + . gene_id "HERVL_4q28.3i"; transcript_id "HERVL_4q28.3i"; locus "HERVL_4q28.3i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0429"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1511"; chr4 rmsk exon 135416623 135417048 2913 + . gene_id "HERVL_4q28.3i"; transcript_id "HERVL_4q28.3i"; locus "HERVL_4q28.3i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0429"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr4 rmsk exon 135417138 135417188 286 + . gene_id "HERVL_4q28.3i"; transcript_id "HERVL_4q28.3i"; locus "HERVL_4q28.3i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0429"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### ERVLE_4q28.3h ### chr4 rmsk gene 135417707 135419847 . + . gene_id "ERVLE_4q28.3h"; transcript_id "ERVLE_4q28.3h"; locus "ERVLE_4q28.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1139"; model_cov "1774"; model_pct "31.3"; chr4 rmsk exon 135417707 135418367 1254 + . gene_id "ERVLE_4q28.3h"; transcript_id "ERVLE_4q28.3h"; locus "ERVLE_4q28.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1139"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "-1599"; repStart "3381"; chr4 rmsk exon 135418413 135418831 1254 + . gene_id "ERVLE_4q28.3h"; transcript_id "ERVLE_4q28.3h"; locus "ERVLE_4q28.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1139"; repClass "LTR"; repEnd "4506"; repFamily "ERVL"; repLeft "-1161"; repStart "4069"; chr4 rmsk exon 135418871 135418958 336 + . gene_id "ERVLE_4q28.3h"; transcript_id "ERVLE_4q28.3h"; locus "ERVLE_4q28.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1139"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "-1103"; repStart "4474"; chr4 rmsk exon 135419290 135419847 1249 + . gene_id "ERVLE_4q28.3h"; transcript_id "ERVLE_4q28.3h"; locus "ERVLE_4q28.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1139"; repClass "LTR"; repEnd "5341"; repFamily "ERVL"; repLeft "-326"; repStart "4781"; ### HUERSP3B_4q28.3 ### chr4 rmsk gene 135594953 135604761 . + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0048"; model_cov "8433"; model_pct "100.0"; chr4 rmsk exon 135594953 135595563 3612 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 135595581 135598203 32838 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "1351"; repFamily "ERV1"; repLeft "-6067"; repStart "-1484"; chr4 rmsk exon 135598626 135603416 32838 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "6534"; repFamily "ERV1"; repLeft "-884"; repStart "1352"; chr4 rmsk exon 135603730 135604000 9566 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "6797"; repFamily "ERV1"; repLeft "-621"; repStart "6535"; chr4 rmsk exon 135603997 135604151 951 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "7263"; chr4 rmsk exon 135604152 135604761 3885 + . gene_id "HUERSP3B_4q28.3"; transcript_id "HUERSP3B_4q28.3"; locus "HUERSP3B_4q28.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0048"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q28.3m ### chr4 rmsk gene 135725706 135728654 . - . gene_id "ERV316A3_4q28.3m"; transcript_id "ERV316A3_4q28.3m"; locus "ERV316A3_4q28.3m"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0836"; model_cov "2557"; model_pct "48.9"; chr4 rmsk exon 135725706 135728257 7271 - . gene_id "ERV316A3_4q28.3m"; transcript_id "ERV316A3_4q28.3m"; locus "ERV316A3_4q28.3m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0836"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "2669"; repStart "0"; chr4 rmsk exon 135728362 135728654 691 - . gene_id "ERV316A3_4q28.3m"; transcript_id "ERV316A3_4q28.3m"; locus "ERV316A3_4q28.3m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0836"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "0"; repStart "-134"; ### ERVLB4_4q28.3e ### chr4 rmsk gene 135838958 135844190 . + . gene_id "ERVLB4_4q28.3e"; transcript_id "ERVLB4_4q28.3e"; locus "ERVLB4_4q28.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0524"; model_cov "4299"; model_pct "75.2"; chr4 rmsk exon 135838958 135842228 16260 + . gene_id "ERVLB4_4q28.3e"; transcript_id "ERVLB4_4q28.3e"; locus "ERVLB4_4q28.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0524"; repClass "LTR"; repEnd "4647"; repFamily "ERVL"; repLeft "-1067"; repStart "1390"; chr4 rmsk exon 135842725 135843750 4391 + . gene_id "ERVLB4_4q28.3e"; transcript_id "ERVLB4_4q28.3e"; locus "ERVLB4_4q28.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0524"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4671"; chr4 rmsk exon 135843752 135844190 965 + . gene_id "ERVLB4_4q28.3e"; transcript_id "ERVLB4_4q28.3e"; locus "ERVLB4_4q28.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0524"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-40"; repStart "2"; ### ERVLE_4q28.3i ### chr4 rmsk gene 135931741 135932475 . + . gene_id "ERVLE_4q28.3i"; transcript_id "ERVLE_4q28.3i"; locus "ERVLE_4q28.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1141"; model_cov "702"; model_pct "12.4"; chr4 rmsk exon 135931741 135931836 253 + . gene_id "ERVLE_4q28.3i"; transcript_id "ERVLE_4q28.3i"; locus "ERVLE_4q28.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1141"; repClass "LTR"; repEnd "2934"; repFamily "ERVL"; repLeft "-2733"; repStart "2839"; chr4 rmsk exon 135931890 135932475 793 + . gene_id "ERVLE_4q28.3i"; transcript_id "ERVLE_4q28.3i"; locus "ERVLE_4q28.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1141"; repClass "LTR"; repEnd "3567"; repFamily "ERVL"; repLeft "-2100"; repStart "2960"; ### ERVLE_4q28.3j ### chr4 rmsk gene 135951319 135954865 . + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1142"; model_cov "1879"; model_pct "33.2"; chr4 rmsk exon 135951319 135951459 266 + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1142"; repClass "LTR"; repEnd "630"; repFamily "ERVL"; repLeft "-33"; repStart "500"; chr4 rmsk exon 135951734 135951761 266 + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1142"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "631"; chr4 rmsk exon 135952105 135953298 2117 + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1142"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "-4424"; repStart "20"; chr4 rmsk exon 135953920 135954312 1731 + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1142"; repClass "LTR"; repEnd "1712"; repFamily "ERVL"; repLeft "-3955"; repStart "1329"; chr4 rmsk exon 135954600 135954865 1731 + . gene_id "ERVLE_4q28.3j"; transcript_id "ERVLE_4q28.3j"; locus "ERVLE_4q28.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1142"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "-3681"; repStart "1713"; ### HML3_4q28.3b ### chr4 rmsk gene 135954866 135961023 . - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0076"; model_cov "5267"; model_pct "87.5"; chr4 rmsk exon 135954866 135955330 2986 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 135955333 135956147 6153 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "5193"; repStart "-2"; chr4 rmsk exon 135956163 135956377 419 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "4282"; repFamily "ERVK"; repLeft "4070"; repStart "-1739"; chr4 rmsk exon 135956349 135959865 27002 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "1641"; repStart "-825"; chr4 rmsk exon 135959869 135960531 4788 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "675"; repFamily "ERVK"; repLeft "1"; repStart "-5346"; chr4 rmsk exon 135960532 135961023 3273 - . gene_id "HML3_4q28.3b"; transcript_id "HML3_4q28.3b"; locus "HML3_4q28.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0076"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_4q28.3k ### chr4 rmsk gene 135961028 135961860 . + . gene_id "ERVLE_4q28.3k"; transcript_id "ERVLE_4q28.3k"; locus "ERVLE_4q28.3k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1143"; model_cov "870"; model_pct "15.4"; chr4 rmsk exon 135961028 135961680 2257 + . gene_id "ERVLE_4q28.3k"; transcript_id "ERVLE_4q28.3k"; locus "ERVLE_4q28.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1143"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "-2986"; repStart "1987"; chr4 rmsk exon 135961690 135961860 255 + . gene_id "ERVLE_4q28.3k"; transcript_id "ERVLE_4q28.3k"; locus "ERVLE_4q28.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1143"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "-450"; repStart "5041"; ### HERVL_4q28.3j ### chr4 rmsk gene 136138010 136139777 . + . gene_id "HERVL_4q28.3j"; transcript_id "HERVL_4q28.3j"; locus "HERVL_4q28.3j"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0430"; model_cov "761"; model_pct "13.5"; chr4 rmsk exon 136138010 136138162 275 + . gene_id "HERVL_4q28.3j"; transcript_id "HERVL_4q28.3j"; locus "HERVL_4q28.3j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0430"; repClass "LTR"; repEnd "1448"; repFamily "ERVL"; repLeft "-4206"; repStart "1293"; chr4 rmsk exon 136138320 136138590 278 + . gene_id "HERVL_4q28.3j"; transcript_id "HERVL_4q28.3j"; locus "HERVL_4q28.3j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0430"; repClass "LTR"; repEnd "1945"; repFamily "ERVL"; repLeft "-3709"; repStart "1656"; chr4 rmsk exon 136139462 136139777 380 + . gene_id "HERVL_4q28.3j"; transcript_id "HERVL_4q28.3j"; locus "HERVL_4q28.3j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0430"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "-3244"; repStart "2093"; ### ERVLB4_4q28.3f ### chr4 rmsk gene 136301269 136307253 . - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0525"; model_cov "4839"; model_pct "84.7"; chr4 rmsk exon 136301269 136301642 594 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "3"; repStart "-4"; chr4 rmsk exon 136301644 136301777 640 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5581"; repStart "0"; chr4 rmsk exon 136301935 136303862 7422 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "5579"; repFamily "ERVL"; repLeft "3525"; repStart "-135"; chr4 rmsk exon 136303868 136304855 4178 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "2445"; repStart "-2248"; chr4 rmsk exon 136304843 136305246 1826 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "2115"; repFamily "ERVL"; repLeft "1711"; repStart "-3599"; chr4 rmsk exon 136305466 136305516 2310 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "1684"; repFamily "ERVL"; repLeft "1639"; repStart "-4030"; chr4 rmsk exon 136305823 136306406 2310 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "1638"; repFamily "ERVL"; repLeft "1059"; repStart "-4076"; chr4 rmsk exon 136306405 136306982 2809 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "604"; repFamily "ERVL"; repLeft "1"; repStart "-5110"; chr4 rmsk exon 136306983 136307253 638 - . gene_id "ERVLB4_4q28.3f"; transcript_id "ERVLB4_4q28.3f"; locus "ERVLB4_4q28.3f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0525"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "132"; repStart "0"; ### ERVLB4_4q28.3g ### chr4 rmsk gene 136308959 136313328 . + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0527"; model_cov "2277"; model_pct "39.8"; chr4 rmsk exon 136308959 136309441 1539 + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0527"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr4 rmsk exon 136309450 136310081 3014 + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0527"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "-5062"; repStart "1"; chr4 rmsk exon 136311201 136312572 7069 + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0527"; repClass "LTR"; repEnd "2096"; repFamily "ERVL"; repLeft "-3618"; repStart "648"; chr4 rmsk exon 136312685 136312722 278 + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0527"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-3185"; repStart "2492"; chr4 rmsk exon 136313193 136313328 553 + . gene_id "ERVLB4_4q28.3g"; transcript_id "ERVLB4_4q28.3g"; locus "ERVLB4_4q28.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0527"; repClass "LTR"; repEnd "2686"; repFamily "ERVL"; repLeft "-3028"; repStart "2545"; ### ERVL_4q28.3 ### chr4 rmsk gene 136380419 136383512 . + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0116"; model_cov "1892"; model_pct "32.9"; chr4 rmsk exon 136380419 136380506 1553 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "1673"; repFamily "ERVL"; repLeft "-4084"; repStart "1591"; chr4 rmsk exon 136380923 136381142 1553 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "1894"; repFamily "ERVL"; repLeft "-3863"; repStart "1674"; chr4 rmsk exon 136381182 136381341 827 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "2153"; repFamily "ERVL"; repLeft "-3604"; repStart "1993"; chr4 rmsk exon 136381627 136382368 4325 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "3967"; repFamily "ERVL"; repLeft "-1790"; repStart "3222"; chr4 rmsk exon 136382365 136383058 3131 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "5749"; repFamily "ERVL"; repLeft "-8"; repStart "5064"; chr4 rmsk exon 136383067 136383512 1473 + . gene_id "ERVL_4q28.3"; transcript_id "ERVL_4q28.3"; locus "ERVL_4q28.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0116"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### ERVLB4_4q28.3h ### chr4 rmsk gene 136483330 136485615 . - . gene_id "ERVLB4_4q28.3h"; transcript_id "ERVLB4_4q28.3h"; locus "ERVLB4_4q28.3h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0528"; model_cov "1558"; model_pct "27.3"; chr4 rmsk exon 136483330 136483384 278 - . gene_id "ERVLB4_4q28.3h"; transcript_id "ERVLB4_4q28.3h"; locus "ERVLB4_4q28.3h"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0528"; repClass "LTR"; repEnd "362"; repFamily "ERVL"; repLeft "338"; repStart "-52"; chr4 rmsk exon 136483711 136484057 1666 - . gene_id "ERVLB4_4q28.3h"; transcript_id "ERVLB4_4q28.3h"; locus "ERVLB4_4q28.3h"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0528"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "3"; repStart "-71"; chr4 rmsk exon 136484058 136485615 8369 - . gene_id "ERVLB4_4q28.3h"; transcript_id "ERVLB4_4q28.3h"; locus "ERVLB4_4q28.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0528"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4156"; repStart "0"; ### HERVH_4q28.3k ### chr4 rmsk gene 136610281 136618761 . + . gene_id "HERVH_4q28.3k"; transcript_id "HERVH_4q28.3k"; locus "HERVH_4q28.3k"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0419"; model_cov "7712"; model_pct "100.0"; chr4 rmsk exon 136610281 136610615 1305 + . gene_id "HERVH_4q28.3k"; transcript_id "HERVH_4q28.3k"; locus "HERVH_4q28.3k"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0419"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "146"; chr4 rmsk exon 136610616 136618458 19510 + . gene_id "HERVH_4q28.3k"; transcript_id "HERVH_4q28.3k"; locus "HERVH_4q28.3k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0419"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 136618495 136618761 1490 + . gene_id "HERVH_4q28.3k"; transcript_id "HERVH_4q28.3k"; locus "HERVH_4q28.3k"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0419"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "127"; ### HUERSP2_4q28.3 ### chr4 rmsk gene 136636034 136640678 . + . gene_id "HUERSP2_4q28.3"; transcript_id "HUERSP2_4q28.3"; locus "HUERSP2_4q28.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0047"; model_cov "2881"; model_pct "93.3"; chr4 rmsk exon 136636034 136636867 5311 + . gene_id "HUERSP2_4q28.3"; transcript_id "HUERSP2_4q28.3"; locus "HUERSP2_4q28.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0047"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 136636963 136639850 16481 + . gene_id "HUERSP2_4q28.3"; transcript_id "HUERSP2_4q28.3"; locus "HUERSP2_4q28.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0047"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "207"; chr4 rmsk exon 136639851 136640678 5167 + . gene_id "HUERSP2_4q28.3"; transcript_id "HUERSP2_4q28.3"; locus "HUERSP2_4q28.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0047"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q28.3l ### chr4 rmsk gene 136652286 136654345 . + . gene_id "ERVLE_4q28.3l"; transcript_id "ERVLE_4q28.3l"; locus "ERVLE_4q28.3l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1145"; model_cov "1869"; model_pct "33.0"; chr4 rmsk exon 136652286 136652630 656 + . gene_id "ERVLE_4q28.3l"; transcript_id "ERVLE_4q28.3l"; locus "ERVLE_4q28.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1145"; repClass "LTR"; repEnd "712"; repFamily "ERVL"; repLeft "-4955"; repStart "337"; chr4 rmsk exon 136652931 136654345 1418 + . gene_id "ERVLE_4q28.3l"; transcript_id "ERVLE_4q28.3l"; locus "ERVLE_4q28.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1145"; repClass "LTR"; repEnd "2668"; repFamily "ERVL"; repLeft "-2999"; repStart "1174"; ### ERV316A3_4q28.3n ### chr4 rmsk gene 136672204 136673670 . + . gene_id "ERV316A3_4q28.3n"; transcript_id "ERV316A3_4q28.3n"; locus "ERV316A3_4q28.3n"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0838"; model_cov "1571"; model_pct "30.1"; chr4 rmsk exon 136672204 136673167 1120 + . gene_id "ERV316A3_4q28.3n"; transcript_id "ERV316A3_4q28.3n"; locus "ERV316A3_4q28.3n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0838"; repClass "LTR"; repEnd "1693"; repFamily "ERVL"; repLeft "-3533"; repStart "626"; chr4 rmsk exon 136673166 136673670 1153 + . gene_id "ERV316A3_4q28.3n"; transcript_id "ERV316A3_4q28.3n"; locus "ERV316A3_4q28.3n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0838"; repClass "LTR"; repEnd "2541"; repFamily "ERVL"; repLeft "-2685"; repStart "2037"; ### MER61_4q28.3c ### chr4 rmsk gene 136716088 136721553 . + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0133"; model_cov "4672"; model_pct "89.6"; chr4 rmsk exon 136716088 136716221 1494 + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0133"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "-192"; repStart "1"; chr4 rmsk exon 136716511 136716710 1494 + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0133"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-1"; repStart "150"; chr4 rmsk exon 136716711 136717455 2769 + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0133"; repClass "LTR"; repEnd "776"; repFamily "ERV1"; repLeft "-4441"; repStart "1"; chr4 rmsk exon 136717450 136721228 23518 + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0133"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1320"; chr4 rmsk exon 136721229 136721553 1746 + . gene_id "MER61_4q28.3c"; transcript_id "MER61_4q28.3c"; locus "MER61_4q28.3c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0133"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q28.3o ### chr4 rmsk gene 136926806 136932582 . + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0839"; model_cov "3252"; model_pct "62.2"; chr4 rmsk exon 136926806 136927240 1334 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "-9"; repStart "8"; chr4 rmsk exon 136927241 136927609 1298 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "-4865"; repStart "28"; chr4 rmsk exon 136927900 136928482 1298 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "-4237"; repStart "362"; chr4 rmsk exon 136928575 136928824 3224 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "-3866"; repStart "1122"; chr4 rmsk exon 136930244 136930985 3224 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "-3070"; repStart "1361"; chr4 rmsk exon 136931377 136932582 3224 + . gene_id "ERV316A3_4q28.3o"; transcript_id "ERV316A3_4q28.3o"; locus "ERV316A3_4q28.3o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0839"; repClass "LTR"; repEnd "3416"; repFamily "ERVL"; repLeft "-1810"; repStart "2157"; ### ERV316A3_4q28.3p ### chr4 rmsk gene 136991055 136992817 . - . gene_id "ERV316A3_4q28.3p"; transcript_id "ERV316A3_4q28.3p"; locus "ERV316A3_4q28.3p"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0840"; model_cov "1152"; model_pct "22.0"; chr4 rmsk exon 136991055 136991422 1063 - . gene_id "ERV316A3_4q28.3p"; transcript_id "ERV316A3_4q28.3p"; locus "ERV316A3_4q28.3p"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0840"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "4504"; repStart "-353"; chr4 rmsk exon 136991576 136992029 579 - . gene_id "ERV316A3_4q28.3p"; transcript_id "ERV316A3_4q28.3p"; locus "ERV316A3_4q28.3p"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0840"; repClass "LTR"; repEnd "4302"; repFamily "ERVL"; repLeft "3789"; repStart "-924"; chr4 rmsk exon 136992552 136992817 880 - . gene_id "ERV316A3_4q28.3p"; transcript_id "ERV316A3_4q28.3p"; locus "ERV316A3_4q28.3p"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0840"; repClass "LTR"; repEnd "3783"; repFamily "ERVL"; repLeft "3513"; repStart "-1443"; ### ERV316A3_4q28.3q ### chr4 rmsk gene 137378340 137381280 . + . gene_id "ERV316A3_4q28.3q"; transcript_id "ERV316A3_4q28.3q"; locus "ERV316A3_4q28.3q"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0842"; model_cov "2265"; model_pct "43.3"; chr4 rmsk exon 137378340 137378636 1714 + . gene_id "ERV316A3_4q28.3q"; transcript_id "ERV316A3_4q28.3q"; locus "ERV316A3_4q28.3q"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0842"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "160"; chr4 rmsk exon 137378855 137379627 1125 + . gene_id "ERV316A3_4q28.3q"; transcript_id "ERV316A3_4q28.3q"; locus "ERV316A3_4q28.3q"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0842"; repClass "LTR"; repEnd "1885"; repFamily "ERVL"; repLeft "-3341"; repStart "1089"; chr4 rmsk exon 137379973 137380406 938 + . gene_id "ERV316A3_4q28.3q"; transcript_id "ERV316A3_4q28.3q"; locus "ERV316A3_4q28.3q"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0842"; repClass "LTR"; repEnd "2485"; repFamily "ERVL"; repLeft "-2741"; repStart "2043"; chr4 rmsk exon 137380408 137381280 2277 + . gene_id "ERV316A3_4q28.3q"; transcript_id "ERV316A3_4q28.3q"; locus "ERV316A3_4q28.3q"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0842"; repClass "LTR"; repEnd "4545"; repFamily "ERVL"; repLeft "-681"; repStart "3518"; ### ERV316A3_4q28.3r ### chr4 rmsk gene 137413345 137419231 . - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0843"; model_cov "3201"; model_pct "61.3"; chr4 rmsk exon 137413345 137413465 2013 - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0843"; repClass "LTR"; repEnd "3705"; repFamily "ERVL"; repLeft "3580"; repStart "-1521"; chr4 rmsk exon 137413841 137414639 2013 - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0843"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2767"; repStart "-1647"; chr4 rmsk exon 137414647 137416395 2460 - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0843"; repClass "LTR"; repEnd "2375"; repFamily "ERVL"; repLeft "515"; repStart "-2851"; chr4 rmsk exon 137416606 137416822 415 - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0843"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "380"; repStart "-4615"; chr4 rmsk exon 137419068 137419231 645 - . gene_id "ERV316A3_4q28.3r"; transcript_id "ERV316A3_4q28.3r"; locus "ERV316A3_4q28.3r"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0843"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "199"; repStart "-4854"; ### ERV316A3_4q28.3s ### chr4 rmsk gene 137436313 137438946 . + . gene_id "ERV316A3_4q28.3s"; transcript_id "ERV316A3_4q28.3s"; locus "ERV316A3_4q28.3s"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0844"; model_cov "1807"; model_pct "34.6"; chr4 rmsk exon 137436313 137436755 1050 + . gene_id "ERV316A3_4q28.3s"; transcript_id "ERV316A3_4q28.3s"; locus "ERV316A3_4q28.3s"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0844"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-7"; repStart "9"; chr4 rmsk exon 137436759 137437074 417 + . gene_id "ERV316A3_4q28.3s"; transcript_id "ERV316A3_4q28.3s"; locus "ERV316A3_4q28.3s"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0844"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-4931"; repStart "1"; chr4 rmsk exon 137437115 137437779 3492 + . gene_id "ERV316A3_4q28.3s"; transcript_id "ERV316A3_4q28.3s"; locus "ERV316A3_4q28.3s"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0844"; repClass "LTR"; repEnd "3430"; repFamily "ERVL"; repLeft "-1796"; repStart "2736"; chr4 rmsk exon 137438153 137438946 3492 + . gene_id "ERV316A3_4q28.3s"; transcript_id "ERV316A3_4q28.3s"; locus "ERV316A3_4q28.3s"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0844"; repClass "LTR"; repEnd "4250"; repFamily "ERVL"; repLeft "-976"; repStart "3431"; ### MER41_4q28.3 ### chr4 rmsk gene 137464596 137469531 . + . gene_id "MER41_4q28.3"; transcript_id "MER41_4q28.3"; locus "MER41_4q28.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0155"; model_cov "5945"; model_pct "100.0"; chr4 rmsk exon 137464596 137464929 2383 + . gene_id "MER41_4q28.3"; transcript_id "MER41_4q28.3"; locus "MER41_4q28.3"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0155"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "-1"; repStart "238"; chr4 rmsk exon 137464931 137468996 10889 + . gene_id "MER41_4q28.3"; transcript_id "MER41_4q28.3"; locus "MER41_4q28.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0155"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 137468998 137469531 3433 + . gene_id "MER41_4q28.3"; transcript_id "MER41_4q28.3"; locus "MER41_4q28.3"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0155"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### HERVEA_4q28.3 ### chr4 rmsk gene 137478311 137487044 . + . gene_id "HERVEA_4q28.3"; transcript_id "HERVEA_4q28.3"; locus "HERVEA_4q28.3"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0033"; model_cov "7846"; model_pct "100.0"; chr4 rmsk exon 137478311 137478759 3545 + . gene_id "HERVEA_4q28.3"; transcript_id "HERVEA_4q28.3"; locus "HERVEA_4q28.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0033"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 137478760 137486581 62926 + . gene_id "HERVEA_4q28.3"; transcript_id "HERVEA_4q28.3"; locus "HERVEA_4q28.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0033"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 137486582 137487044 3969 + . gene_id "HERVEA_4q28.3"; transcript_id "HERVEA_4q28.3"; locus "HERVEA_4q28.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0033"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q28.3t ### chr4 rmsk gene 137964699 137969722 . + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0845"; model_cov "2158"; model_pct "41.3"; chr4 rmsk exon 137964699 137964926 629 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "226"; chr4 rmsk exon 137964927 137965766 576 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "1014"; repFamily "ERVL"; repLeft "-4212"; repStart "231"; chr4 rmsk exon 137965762 137966416 1652 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "-3665"; repStart "902"; chr4 rmsk exon 137967104 137967379 1652 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "1813"; repFamily "ERVL"; repLeft "-3413"; repStart "1562"; chr4 rmsk exon 137968100 137968367 1652 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "2071"; repFamily "ERVL"; repLeft "-3155"; repStart "1814"; chr4 rmsk exon 137969072 137969288 393 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5018"; chr4 rmsk exon 137969293 137969722 938 + . gene_id "ERV316A3_4q28.3t"; transcript_id "ERV316A3_4q28.3t"; locus "ERV316A3_4q28.3t"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0845"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERVLB4_4q28.3i ### chr4 rmsk gene 138037565 138044529 . - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0531"; model_cov "4367"; model_pct "76.4"; chr4 rmsk exon 138037565 138037991 1201 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "532"; repFamily "ERVL"; repLeft "1"; repStart "-131"; chr4 rmsk exon 138037997 138038128 520 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "5578"; repStart "-6"; chr4 rmsk exon 138039332 138041794 5549 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "4435"; repFamily "ERVL"; repLeft "1675"; repStart "-1279"; chr4 rmsk exon 138042422 138042684 5549 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "1627"; repFamily "ERVL"; repLeft "1362"; repStart "-4087"; chr4 rmsk exon 138042736 138043932 4335 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "1264"; repFamily "ERVL"; repLeft "52"; repStart "-4450"; chr4 rmsk exon 138043940 138044529 1472 - . gene_id "ERVLB4_4q28.3i"; transcript_id "ERVLB4_4q28.3i"; locus "ERVLB4_4q28.3i"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0531"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "1"; repStart "-8"; ### HERVL74_4q28.3b ### chr4 rmsk gene 138124267 138130352 . - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0025"; model_cov "3139"; model_pct "55.2"; chr4 rmsk exon 138124267 138124801 1872 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4586"; repStart "-544"; chr4 rmsk exon 138124790 138124946 790 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3918"; repStart "-1612"; chr4 rmsk exon 138124950 138125097 732 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "3494"; repStart "-2043"; chr4 rmsk exon 138125107 138125625 9446 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "2837"; repStart "-2356"; chr4 rmsk exon 138128019 138128428 9446 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "2836"; repFamily "ERVL"; repLeft "2428"; repStart "-2849"; chr4 rmsk exon 138128742 138128857 9446 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "2427"; repFamily "ERVL"; repLeft "2317"; repStart "-3258"; chr4 rmsk exon 138129166 138130352 9446 - . gene_id "HERVL74_4q28.3b"; transcript_id "HERVL74_4q28.3b"; locus "HERVL74_4q28.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0025"; repClass "LTR"; repEnd "2316"; repFamily "ERVL"; repLeft "1045"; repStart "-3369"; ### HERVW_4q31.1 ### chr4 rmsk gene 138621787 138627199 . - . gene_id "HERVW_4q31.1"; transcript_id "HERVW_4q31.1"; locus "HERVW_4q31.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0106"; model_cov "4528"; model_pct "52.5"; chr4 rmsk exon 138621787 138622536 5604 - . gene_id "HERVW_4q31.1"; transcript_id "HERVW_4q31.1"; locus "HERVW_4q31.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0106"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 138622539 138627057 35301 - . gene_id "HERVW_4q31.1"; transcript_id "HERVW_4q31.1"; locus "HERVW_4q31.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0106"; repClass "LTR"; repEnd "8624"; repFamily "ERV1"; repLeft "4096"; repStart "-2"; chr4 rmsk exon 138627058 138627199 1011 - . gene_id "HERVW_4q31.1"; transcript_id "HERVW_4q31.1"; locus "HERVW_4q31.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0106"; repClass "LTR"; repEnd "139"; repFamily "ERV1"; repLeft "1"; repStart "-641"; ### HERVH_4q31.1a ### chr4 rmsk gene 138927836 138933543 . + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0420"; model_cov "4900"; model_pct "63.5"; chr4 rmsk exon 138927836 138928235 2605 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 138928238 138931267 20871 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 138931262 138931409 862 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 138931409 138931902 3652 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr4 rmsk exon 138931905 138932553 4348 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 138932555 138932769 1318 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 138932768 138933141 2356 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 138933142 138933543 2695 + . gene_id "HERVH_4q31.1a"; transcript_id "HERVH_4q31.1a"; locus "HERVH_4q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0420"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_4q31.1b ### chr4 rmsk gene 139157976 139160055 . - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0421"; model_cov "1935"; model_pct "25.1"; chr4 rmsk exon 139157976 139158372 2017 - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0421"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-13"; repStart "-4"; chr4 rmsk exon 139158373 139158837 2247 - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0421"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr4 rmsk exon 139158842 139159609 4849 - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0421"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4221"; repStart "-2693"; chr4 rmsk exon 139159610 139159678 399 - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0421"; repClass "LTR"; repEnd "4288"; repFamily "ERV1"; repLeft "4221"; repStart "-3425"; chr4 rmsk exon 139159679 139160055 1792 - . gene_id "HERVH_4q31.1b"; transcript_id "HERVH_4q31.1b"; locus "HERVH_4q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0421"; repClass "LTR"; repEnd "5660"; repFamily "ERV1"; repLeft "5021"; repStart "-2053"; ### MER61_4q31.1 ### chr4 rmsk gene 139236037 139236507 . - . gene_id "MER61_4q31.1"; transcript_id "MER61_4q31.1"; locus "MER61_4q31.1"; category "internal"; intModel "MER61-int"; locid "MER61-int_0134"; model_cov "535"; model_pct "10.3"; chr4 rmsk exon 139236037 139236135 623 - . gene_id "MER61_4q31.1"; transcript_id "MER61_4q31.1"; locus "MER61_4q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0134"; repClass "LTR"; repEnd "2697"; repFamily "ERV1"; repLeft "2597"; repStart "-2520"; chr4 rmsk exon 139236135 139236507 1770 - . gene_id "MER61_4q31.1"; transcript_id "MER61_4q31.1"; locus "MER61_4q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0134"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "2210"; repStart "-2572"; ### HERVL_4q31.1 ### chr4 rmsk gene 139442392 139449816 . + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0431"; model_cov "5281"; model_pct "93.4"; chr4 rmsk exon 139442392 139442838 3173 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 139442839 139442997 9163 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "155"; repFamily "ERVL"; repLeft "-5499"; repStart "1"; chr4 rmsk exon 139443292 139444418 9854 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "1322"; repFamily "ERVL"; repLeft "-4332"; repStart "156"; chr4 rmsk exon 139444411 139447658 26265 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "-611"; repStart "1767"; chr4 rmsk exon 139447971 139448432 3620 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "-234"; repStart "4953"; chr4 rmsk exon 139449162 139449372 1439 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5436"; chr4 rmsk exon 139449373 139449816 3164 + . gene_id "HERVL_4q31.1"; transcript_id "HERVL_4q31.1"; locus "HERVL_4q31.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0431"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVK11_4q31.1 ### chr4 rmsk gene 139632366 139639045 . + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0032"; model_cov "4342"; model_pct "54.6"; chr4 rmsk exon 139632366 139632770 3014 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "415"; repFamily "ERVK"; repLeft "-851"; repStart "1"; chr4 rmsk exon 139632765 139633216 3241 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "828"; chr4 rmsk exon 139633217 139634993 13306 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "1748"; repFamily "ERVK"; repLeft "-6205"; repStart "1"; chr4 rmsk exon 139634992 139637125 21154 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "7495"; repFamily "ERVK"; repLeft "-458"; repStart "5357"; chr4 rmsk exon 139637427 139637892 21154 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "7496"; chr4 rmsk exon 139637893 139639045 4746 + . gene_id "HERVK11_4q31.1"; transcript_id "HERVK11_4q31.1"; locus "HERVK11_4q31.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0032"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_4q31.1a ### chr4 rmsk gene 139639594 139642728 . - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1151"; model_cov "1251"; model_pct "22.1"; chr4 rmsk exon 139639594 139640198 1902 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "3"; repStart "-43"; chr4 rmsk exon 139640209 139640406 721 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5436"; repStart "-13"; chr4 rmsk exon 139640422 139640559 475 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "5379"; repFamily "ERVL"; repLeft "5228"; repStart "-288"; chr4 rmsk exon 139641255 139641648 2558 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "5243"; repFamily "ERVL"; repLeft "4816"; repStart "-424"; chr4 rmsk exon 139641961 139642214 2558 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "4815"; repFamily "ERVL"; repLeft "4531"; repStart "-852"; chr4 rmsk exon 139642335 139642389 363 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "4542"; repFamily "ERVL"; repLeft "4487"; repStart "-1125"; chr4 rmsk exon 139642611 139642728 554 - . gene_id "ERVLE_4q31.1a"; transcript_id "ERVLE_4q31.1a"; locus "ERVLE_4q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1151"; repClass "LTR"; repEnd "3619"; repFamily "ERVL"; repLeft "3503"; repStart "-2048"; ### MER41_4q31.1 ### chr4 rmsk gene 139711256 139715980 . - . gene_id "MER41_4q31.1"; transcript_id "MER41_4q31.1"; locus "MER41_4q31.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0157"; model_cov "3890"; model_pct "65.4"; chr4 rmsk exon 139711256 139711795 4053 - . gene_id "MER41_4q31.1"; transcript_id "MER41_4q31.1"; locus "MER41_4q31.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0157"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 139711796 139713093 10194 - . gene_id "MER41_4q31.1"; transcript_id "MER41_4q31.1"; locus "MER41_4q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0157"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4623"; repStart "-2"; chr4 rmsk exon 139713087 139715323 6142 - . gene_id "MER41_4q31.1"; transcript_id "MER41_4q31.1"; locus "MER41_4q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0157"; repClass "LTR"; repEnd "2255"; repFamily "ERV1"; repLeft "-314"; repStart "-3691"; chr4 rmsk exon 139715431 139715980 4513 - . gene_id "MER41_4q31.1"; transcript_id "MER41_4q31.1"; locus "MER41_4q31.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0157"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q31.1a ### chr4 rmsk gene 140210609 140212643 . - . gene_id "ERV316A3_4q31.1a"; transcript_id "ERV316A3_4q31.1a"; locus "ERV316A3_4q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0846"; model_cov "1694"; model_pct "32.4"; chr4 rmsk exon 140210609 140210634 1716 - . gene_id "ERV316A3_4q31.1a"; transcript_id "ERV316A3_4q31.1a"; locus "ERV316A3_4q31.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0846"; repClass "LTR"; repEnd "23"; repFamily "ERVL"; repLeft "4"; repStart "-440"; chr4 rmsk exon 140211028 140212204 3224 - . gene_id "ERV316A3_4q31.1a"; transcript_id "ERV316A3_4q31.1a"; locus "ERV316A3_4q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0846"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3980"; repStart "0"; chr4 rmsk exon 140212221 140212643 879 - . gene_id "ERV316A3_4q31.1a"; transcript_id "ERV316A3_4q31.1a"; locus "ERV316A3_4q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0846"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "771"; repStart "-4007"; ### HERVH_4q31.1c ### chr4 rmsk gene 140214275 140219193 . + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0422"; model_cov "4727"; model_pct "61.3"; chr4 rmsk exon 140214275 140216897 11966 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "180"; chr4 rmsk exon 140216892 140217039 798 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 140217030 140217532 3320 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 140217535 140218198 4079 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 140218200 140218416 1290 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 140218417 140218793 2268 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 140218794 140219193 2767 + . gene_id "HERVH_4q31.1c"; transcript_id "HERVH_4q31.1c"; locus "HERVH_4q31.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0422"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q31.1b ### chr4 rmsk gene 140289102 140293802 . - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0847"; model_cov "3518"; model_pct "67.3"; chr4 rmsk exon 140289102 140290052 3025 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "3668"; repStart "-569"; chr4 rmsk exon 140290304 140290534 3024 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "3445"; repFamily "ERVL"; repLeft "3186"; repStart "-1781"; chr4 rmsk exon 140290836 140291777 3024 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "3185"; repFamily "ERVL"; repLeft "2231"; repStart "-2041"; chr4 rmsk exon 140291762 140292123 1184 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "2238"; repFamily "ERVL"; repLeft "1842"; repStart "-2988"; chr4 rmsk exon 140292129 140292189 2570 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "933"; repFamily "ERVL"; repLeft "881"; repStart "-4293"; chr4 rmsk exon 140292488 140293353 2570 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "880"; repFamily "ERVL"; repLeft "12"; repStart "-4346"; chr4 rmsk exon 140293354 140293802 1494 - . gene_id "ERV316A3_4q31.1b"; transcript_id "ERV316A3_4q31.1b"; locus "ERV316A3_4q31.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0847"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERVLE_4q31.1b ### chr4 rmsk gene 140435357 140437823 . + . gene_id "ERVLE_4q31.1b"; transcript_id "ERVLE_4q31.1b"; locus "ERVLE_4q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1153"; model_cov "2694"; model_pct "47.5"; chr4 rmsk exon 140435357 140435756 1120 + . gene_id "ERVLE_4q31.1b"; transcript_id "ERVLE_4q31.1b"; locus "ERVLE_4q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1153"; repClass "LTR"; repEnd "2150"; repFamily "ERVL"; repLeft "-3517"; repStart "1737"; chr4 rmsk exon 140435750 140436221 1389 + . gene_id "ERVLE_4q31.1b"; transcript_id "ERVLE_4q31.1b"; locus "ERVLE_4q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1153"; repClass "LTR"; repEnd "3314"; repFamily "ERVL"; repLeft "-2353"; repStart "2817"; chr4 rmsk exon 140436273 140437823 3759 + . gene_id "ERVLE_4q31.1b"; transcript_id "ERVLE_4q31.1b"; locus "ERVLE_4q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1153"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "-441"; repStart "3442"; ### HERVI_4q31.21 ### chr4 rmsk gene 140600095 140602334 . - . gene_id "HERVI_4q31.21"; transcript_id "HERVI_4q31.21"; locus "HERVI_4q31.21"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0010"; model_cov "1321"; model_pct "17.0"; chr4 rmsk exon 140600095 140600378 1429 - . gene_id "HERVI_4q31.21"; transcript_id "HERVI_4q31.21"; locus "HERVI_4q31.21"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0010"; repClass "LTR"; repEnd "4367"; repFamily "ERV1"; repLeft "4066"; repStart "-3418"; chr4 rmsk exon 140600800 140601430 2105 - . gene_id "HERVI_4q31.21"; transcript_id "HERVI_4q31.21"; locus "HERVI_4q31.21"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0010"; repClass "LTR"; repEnd "1063"; repFamily "ERV1"; repLeft "336"; repStart "-6722"; chr4 rmsk exon 140601464 140601775 1132 - . gene_id "HERVI_4q31.21"; transcript_id "HERVI_4q31.21"; locus "HERVI_4q31.21"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0010"; repClass "LTR"; repEnd "477"; repFamily "ERV1"; repLeft "184"; repStart "-7308"; chr4 rmsk exon 140601808 140602334 4003 - . gene_id "HERVI_4q31.21"; transcript_id "HERVI_4q31.21"; locus "HERVI_4q31.21"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0010"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q31.21a ### chr4 rmsk gene 141234973 141239196 . + . gene_id "ERV316A3_4q31.21a"; transcript_id "ERV316A3_4q31.21a"; locus "ERV316A3_4q31.21a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0848"; model_cov "3827"; model_pct "73.2"; chr4 rmsk exon 141234973 141236697 3708 + . gene_id "ERV316A3_4q31.21a"; transcript_id "ERV316A3_4q31.21a"; locus "ERV316A3_4q31.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0848"; repClass "LTR"; repEnd "1938"; repFamily "ERVL"; repLeft "-3288"; repStart "212"; chr4 rmsk exon 141236703 141237663 1667 + . gene_id "ERV316A3_4q31.21a"; transcript_id "ERV316A3_4q31.21a"; locus "ERV316A3_4q31.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0848"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "-2143"; repStart "2046"; chr4 rmsk exon 141237708 141238245 3108 + . gene_id "ERV316A3_4q31.21a"; transcript_id "ERV316A3_4q31.21a"; locus "ERV316A3_4q31.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0848"; repClass "LTR"; repEnd "4496"; repFamily "ERVL"; repLeft "-730"; repStart "3963"; chr4 rmsk exon 141238677 141239196 3108 + . gene_id "ERV316A3_4q31.21a"; transcript_id "ERV316A3_4q31.21a"; locus "ERV316A3_4q31.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0848"; repClass "LTR"; repEnd "5028"; repFamily "ERVL"; repLeft "-198"; repStart "4497"; ### ERVLE_4q31.21a ### chr4 rmsk gene 141422582 141426844 . - . gene_id "ERVLE_4q31.21a"; transcript_id "ERVLE_4q31.21a"; locus "ERVLE_4q31.21a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1156"; model_cov "2656"; model_pct "46.9"; chr4 rmsk exon 141422582 141423284 2495 - . gene_id "ERVLE_4q31.21a"; transcript_id "ERVLE_4q31.21a"; locus "ERVLE_4q31.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1156"; repClass "LTR"; repEnd "3866"; repFamily "ERVL"; repLeft "3097"; repStart "-1801"; chr4 rmsk exon 141424403 141425150 4054 - . gene_id "ERVLE_4q31.21a"; transcript_id "ERVLE_4q31.21a"; locus "ERVLE_4q31.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1156"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "2299"; repStart "-2569"; chr4 rmsk exon 141425146 141426297 2287 - . gene_id "ERVLE_4q31.21a"; transcript_id "ERVLE_4q31.21a"; locus "ERVLE_4q31.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1156"; repClass "LTR"; repEnd "1045"; repFamily "ERVL"; repLeft "-43"; repStart "-4622"; chr4 rmsk exon 141426469 141426844 1564 - . gene_id "ERVLE_4q31.21a"; transcript_id "ERVLE_4q31.21a"; locus "ERVLE_4q31.21a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1156"; repClass "LTR"; repEnd "591"; repFamily "ERVL"; repLeft "209"; repStart "-72"; ### ERV316A3_4q31.21b ### chr4 rmsk gene 141464461 141466105 . - . gene_id "ERV316A3_4q31.21b"; transcript_id "ERV316A3_4q31.21b"; locus "ERV316A3_4q31.21b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0851"; model_cov "1070"; model_pct "20.5"; chr4 rmsk exon 141464461 141464536 336 - . gene_id "ERV316A3_4q31.21b"; transcript_id "ERV316A3_4q31.21b"; locus "ERV316A3_4q31.21b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0851"; repClass "LTR"; repEnd "82"; repFamily "ERVL"; repLeft "7"; repStart "-374"; chr4 rmsk exon 141465009 141466105 2034 - . gene_id "ERV316A3_4q31.21b"; transcript_id "ERV316A3_4q31.21b"; locus "ERV316A3_4q31.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0851"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "3980"; repStart "-176"; ### ERVLB4_4q31.21a ### chr4 rmsk gene 141493932 141498355 . + . gene_id "ERVLB4_4q31.21a"; transcript_id "ERVLB4_4q31.21a"; locus "ERVLB4_4q31.21a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0532"; model_cov "4082"; model_pct "71.4"; chr4 rmsk exon 141493932 141494389 2353 + . gene_id "ERVLB4_4q31.21a"; transcript_id "ERVLB4_4q31.21a"; locus "ERVLB4_4q31.21a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0532"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-2"; repStart "3"; chr4 rmsk exon 141494392 141496122 17069 + . gene_id "ERVLB4_4q31.21a"; transcript_id "ERVLB4_4q31.21a"; locus "ERVLB4_4q31.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0532"; repClass "LTR"; repEnd "1857"; repFamily "ERVL"; repLeft "-3857"; repStart "1"; chr4 rmsk exon 141496157 141498355 17069 + . gene_id "ERVLB4_4q31.21a"; transcript_id "ERVLB4_4q31.21a"; locus "ERVLB4_4q31.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0532"; repClass "LTR"; repEnd "4084"; repFamily "ERVL"; repLeft "-1630"; repStart "1858"; ### MER4B_4q31.21 ### chr4 rmsk gene 141620342 141622060 . - . gene_id "MER4B_4q31.21"; transcript_id "MER4B_4q31.21"; locus "MER4B_4q31.21"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0141"; model_cov "827"; model_pct "12.2"; chr4 rmsk exon 141620342 141621216 5299 - . gene_id "MER4B_4q31.21"; transcript_id "MER4B_4q31.21"; locus "MER4B_4q31.21"; repName "MER4D0"; geneRegion "ltr"; locid "MER4B-int_0141"; repClass "LTR"; repEnd "872"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 141621217 141622060 3566 - . gene_id "MER4B_4q31.21"; transcript_id "MER4B_4q31.21"; locus "MER4B_4q31.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0141"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5931"; repStart "0"; ### MER4_4q31.21a ### chr4 rmsk gene 141623623 141624896 . - . gene_id "MER4_4q31.21a"; transcript_id "MER4_4q31.21a"; locus "MER4_4q31.21a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0250"; model_cov "1286"; model_pct "19.5"; chr4 rmsk exon 141623623 141623794 680 - . gene_id "MER4_4q31.21a"; transcript_id "MER4_4q31.21a"; locus "MER4_4q31.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0250"; repClass "LTR"; repEnd "2842"; repFamily "ERV1"; repLeft "2663"; repStart "-3756"; chr4 rmsk exon 141623835 141624896 2654 - . gene_id "MER4_4q31.21a"; transcript_id "MER4_4q31.21a"; locus "MER4_4q31.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0250"; repClass "LTR"; repEnd "1108"; repFamily "ERV1"; repLeft "1"; repStart "-5490"; ### HML3_4q31.21 ### chr4 rmsk gene 141937870 141941589 . - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0077"; model_cov "2773"; model_pct "46.1"; chr4 rmsk exon 141937870 141938346 3389 - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0077"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "33"; repStart "0"; chr4 rmsk exon 141938354 141939704 10589 - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0077"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4669"; repStart "0"; chr4 rmsk exon 141939694 141940442 5974 - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0077"; repClass "LTR"; repEnd "2385"; repFamily "ERVK"; repLeft "1637"; repStart "-3636"; chr4 rmsk exon 141940443 141941110 4965 - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0077"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "1"; repStart "-5347"; chr4 rmsk exon 141941111 141941589 3463 - . gene_id "HML3_4q31.21"; transcript_id "HML3_4q31.21"; locus "HML3_4q31.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0077"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "33"; repStart "0"; ### PABLA_4q31.21a ### chr4 rmsk gene 141978620 141981690 . + . gene_id "PABLA_4q31.21a"; transcript_id "PABLA_4q31.21a"; locus "PABLA_4q31.21a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0037"; model_cov "3610"; model_pct "72.0"; chr4 rmsk exon 141978620 141980111 4212 + . gene_id "PABLA_4q31.21a"; transcript_id "PABLA_4q31.21a"; locus "PABLA_4q31.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0037"; repClass "LTR"; repEnd "-174"; repFamily "ERV1"; repLeft "-5189"; repStart "-2234"; chr4 rmsk exon 141980140 141980409 2837 + . gene_id "PABLA_4q31.21a"; transcript_id "PABLA_4q31.21a"; locus "PABLA_4q31.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0037"; repClass "LTR"; repEnd "958"; repFamily "ERV1"; repLeft "-4057"; repStart "419"; chr4 rmsk exon 141980715 141981690 5057 + . gene_id "PABLA_4q31.21a"; transcript_id "PABLA_4q31.21a"; locus "PABLA_4q31.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0037"; repClass "LTR"; repEnd "3206"; repFamily "ERV1"; repLeft "-1809"; repStart "2195"; ### PABLA_4q31.21b ### chr4 rmsk gene 141997926 141998795 . - . gene_id "PABLA_4q31.21b"; transcript_id "PABLA_4q31.21b"; locus "PABLA_4q31.21b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0038"; model_cov "901"; model_pct "18.0"; chr4 rmsk exon 141997926 141998795 4639 - . gene_id "PABLA_4q31.21b"; transcript_id "PABLA_4q31.21b"; locus "PABLA_4q31.21b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0038"; repClass "LTR"; repEnd "3096"; repFamily "ERV1"; repLeft "2195"; repStart "-1919"; ### ERVLE_4q31.21b ### chr4 rmsk gene 142212289 142214425 . - . gene_id "ERVLE_4q31.21b"; transcript_id "ERVLE_4q31.21b"; locus "ERVLE_4q31.21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1157"; model_cov "2184"; model_pct "38.5"; chr4 rmsk exon 142212289 142213829 1920 - . gene_id "ERVLE_4q31.21b"; transcript_id "ERVLE_4q31.21b"; locus "ERVLE_4q31.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1157"; repClass "LTR"; repEnd "5531"; repFamily "ERVL"; repLeft "3956"; repStart "-136"; chr4 rmsk exon 142213828 142214425 972 - . gene_id "ERVLE_4q31.21b"; transcript_id "ERVLE_4q31.21b"; locus "ERVLE_4q31.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1157"; repClass "LTR"; repEnd "3607"; repFamily "ERVL"; repLeft "2998"; repStart "-2060"; ### MER61_4q31.21a ### chr4 rmsk gene 142656025 142661274 . + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0135"; model_cov "5966"; model_pct "100.0"; chr4 rmsk exon 142656025 142656341 1460 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0135"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 142656342 142657013 3167 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0135"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-4526"; repStart "1"; chr4 rmsk exon 142657060 142657102 336 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0135"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr4 rmsk exon 142657103 142659117 19859 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0135"; repClass "LTR"; repEnd "3877"; repFamily "ERV1"; repLeft "-1340"; repStart "231"; chr4 rmsk exon 142659421 142660980 19859 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0135"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3629"; chr4 rmsk exon 142660981 142661274 1353 + . gene_id "MER61_4q31.21a"; transcript_id "MER61_4q31.21a"; locus "MER61_4q31.21a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0135"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q31.21c ### chr4 rmsk gene 142859332 142861588 . - . gene_id "ERVLE_4q31.21c"; transcript_id "ERVLE_4q31.21c"; locus "ERVLE_4q31.21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1158"; model_cov "2087"; model_pct "36.8"; chr4 rmsk exon 142859332 142859508 2342 - . gene_id "ERVLE_4q31.21c"; transcript_id "ERVLE_4q31.21c"; locus "ERVLE_4q31.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1158"; repClass "LTR"; repEnd "2783"; repFamily "ERVL"; repLeft "2606"; repStart "-2884"; chr4 rmsk exon 142859713 142861588 2342 - . gene_id "ERVLE_4q31.21c"; transcript_id "ERVLE_4q31.21c"; locus "ERVLE_4q31.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1158"; repClass "LTR"; repEnd "2618"; repFamily "ERVL"; repLeft "708"; repStart "-3049"; ### MER4_4q31.21b ### chr4 rmsk gene 143091080 143092446 . + . gene_id "MER4_4q31.21b"; transcript_id "MER4_4q31.21b"; locus "MER4_4q31.21b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0253"; model_cov "1360"; model_pct "20.6"; chr4 rmsk exon 143091080 143091598 2817 + . gene_id "MER4_4q31.21b"; transcript_id "MER4_4q31.21b"; locus "MER4_4q31.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0253"; repClass "LTR"; repEnd "-1198"; repFamily "ERV1"; repLeft "-7796"; repStart "-1671"; chr4 rmsk exon 143091595 143092446 8148 + . gene_id "MER4_4q31.21b"; transcript_id "MER4_4q31.21b"; locus "MER4_4q31.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0253"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-3611"; repStart "2100"; ### MER4_4q31.21c ### chr4 rmsk gene 143092736 143097218 . + . gene_id "MER4_4q31.21c"; transcript_id "MER4_4q31.21c"; locus "MER4_4q31.21c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0254"; model_cov "4753"; model_pct "72.0"; chr4 rmsk exon 143092736 143092979 11415 + . gene_id "MER4_4q31.21c"; transcript_id "MER4_4q31.21c"; locus "MER4_4q31.21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0254"; repClass "LTR"; repEnd "1797"; repFamily "ERV1"; repLeft "-4801"; repStart "1405"; chr4 rmsk exon 143093225 143095736 11415 + . gene_id "MER4_4q31.21c"; transcript_id "MER4_4q31.21c"; locus "MER4_4q31.21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0254"; repClass "LTR"; repEnd "5854"; repFamily "ERV1"; repLeft "-744"; repStart "1798"; chr4 rmsk exon 143096239 143096750 2014 + . gene_id "MER4_4q31.21c"; transcript_id "MER4_4q31.21c"; locus "MER4_4q31.21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0254"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6291"; chr4 rmsk exon 143096759 143097218 3279 + . gene_id "MER4_4q31.21c"; transcript_id "MER4_4q31.21c"; locus "MER4_4q31.21c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0254"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q31.21c ### chr4 rmsk gene 143122163 143124563 . + . gene_id "ERV316A3_4q31.21c"; transcript_id "ERV316A3_4q31.21c"; locus "ERV316A3_4q31.21c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0853"; model_cov "1500"; model_pct "28.7"; chr4 rmsk exon 143122163 143122597 1328 + . gene_id "ERV316A3_4q31.21c"; transcript_id "ERV316A3_4q31.21c"; locus "ERV316A3_4q31.21c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0853"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "2"; chr4 rmsk exon 143122629 143123248 2971 + . gene_id "ERV316A3_4q31.21c"; transcript_id "ERV316A3_4q31.21c"; locus "ERV316A3_4q31.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0853"; repClass "LTR"; repEnd "4371"; repFamily "ERVL"; repLeft "-855"; repStart "3725"; chr4 rmsk exon 143123311 143124126 2971 + . gene_id "ERV316A3_4q31.21c"; transcript_id "ERV316A3_4q31.21c"; locus "ERV316A3_4q31.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0853"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4372"; chr4 rmsk exon 143124127 143124563 1809 + . gene_id "ERV316A3_4q31.21c"; transcript_id "ERV316A3_4q31.21c"; locus "ERV316A3_4q31.21c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0853"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVP71A_4q31.21 ### chr4 rmsk gene 143177566 143180491 . - . gene_id "HERVP71A_4q31.21"; transcript_id "HERVP71A_4q31.21"; locus "HERVP71A_4q31.21"; category "internal"; intModel "HERVP71A-int"; locid "HERVP71A-int_0023"; model_cov "2959"; model_pct "39.0"; chr4 rmsk exon 143177566 143180491 22815 - . gene_id "HERVP71A_4q31.21"; transcript_id "HERVP71A_4q31.21"; locus "HERVP71A_4q31.21"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0023"; repClass "LTR"; repEnd "5788"; repFamily "ERV1"; repLeft "2829"; repStart "-1802"; ### MER61_4q31.21b ### chr4 rmsk gene 143426951 143432579 . - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0136"; model_cov "5115"; model_pct "98.0"; chr4 rmsk exon 143426951 143427185 1401 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0136"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "196"; repStart "0"; chr4 rmsk exon 143427198 143428772 21017 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0136"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "3613"; repStart "-1"; chr4 rmsk exon 143429010 143429097 21017 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0136"; repClass "LTR"; repEnd "3612"; repFamily "ERV1"; repLeft "3527"; repStart "-1605"; chr4 rmsk exon 143429404 143432009 21017 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0136"; repClass "LTR"; repEnd "3526"; repFamily "ERV1"; repLeft "407"; repStart "-1691"; chr4 rmsk exon 143432021 143432106 390 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0136"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "350"; repStart "-4763"; chr4 rmsk exon 143432157 143432355 924 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0136"; repClass "LTR"; repEnd "205"; repFamily "ERV1"; repLeft "1"; repStart "-5012"; chr4 rmsk exon 143432356 143432579 968 - . gene_id "MER61_4q31.21b"; transcript_id "MER61_4q31.21b"; locus "MER61_4q31.21b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0136"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "192"; repStart "0"; ### ERV316A3_4q31.21d ### chr4 rmsk gene 143720039 143721952 . + . gene_id "ERV316A3_4q31.21d"; transcript_id "ERV316A3_4q31.21d"; locus "ERV316A3_4q31.21d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0854"; model_cov "1506"; model_pct "28.8"; chr4 rmsk exon 143720039 143721343 1152 + . gene_id "ERV316A3_4q31.21d"; transcript_id "ERV316A3_4q31.21d"; locus "ERV316A3_4q31.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0854"; repClass "LTR"; repEnd "1901"; repFamily "ERVL"; repLeft "-3325"; repStart "584"; chr4 rmsk exon 143721771 143721952 383 + . gene_id "ERV316A3_4q31.21d"; transcript_id "ERV316A3_4q31.21d"; locus "ERV316A3_4q31.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0854"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-197"; repStart "4840"; ### ERVLB4_4q31.21b ### chr4 rmsk gene 144319656 144321673 . - . gene_id "ERVLB4_4q31.21b"; transcript_id "ERVLB4_4q31.21b"; locus "ERVLB4_4q31.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0533"; model_cov "1749"; model_pct "30.6"; chr4 rmsk exon 144319656 144320944 3282 - . gene_id "ERVLB4_4q31.21b"; transcript_id "ERVLB4_4q31.21b"; locus "ERVLB4_4q31.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0533"; repClass "LTR"; repEnd "3203"; repFamily "ERVL"; repLeft "1859"; repStart "-2511"; chr4 rmsk exon 144321051 144321268 1086 - . gene_id "ERVLB4_4q31.21b"; transcript_id "ERVLB4_4q31.21b"; locus "ERVLB4_4q31.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0533"; repClass "LTR"; repEnd "1526"; repFamily "ERVL"; repLeft "1299"; repStart "-4188"; chr4 rmsk exon 144321513 144321673 1086 - . gene_id "ERVLB4_4q31.21b"; transcript_id "ERVLB4_4q31.21b"; locus "ERVLB4_4q31.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0533"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "1120"; repStart "-4416"; ### ERVLE_4q31.21d ### chr4 rmsk gene 144861022 144862441 . + . gene_id "ERVLE_4q31.21d"; transcript_id "ERVLE_4q31.21d"; locus "ERVLE_4q31.21d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1161"; model_cov "810"; model_pct "14.3"; chr4 rmsk exon 144861022 144861156 620 + . gene_id "ERVLE_4q31.21d"; transcript_id "ERVLE_4q31.21d"; locus "ERVLE_4q31.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1161"; repClass "LTR"; repEnd "3128"; repFamily "ERVL"; repLeft "-2539"; repStart "2982"; chr4 rmsk exon 144861242 144861461 633 + . gene_id "ERVLE_4q31.21d"; transcript_id "ERVLE_4q31.21d"; locus "ERVLE_4q31.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1161"; repClass "LTR"; repEnd "3710"; repFamily "ERVL"; repLeft "-1957"; repStart "3479"; chr4 rmsk exon 144862020 144862441 1322 + . gene_id "ERVLE_4q31.21d"; transcript_id "ERVLE_4q31.21d"; locus "ERVLE_4q31.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1161"; repClass "LTR"; repEnd "4122"; repFamily "ERVL"; repLeft "-1545"; repStart "3689"; ### ERVLE_4q31.21e ### chr4 rmsk gene 144890167 144891006 . + . gene_id "ERVLE_4q31.21e"; transcript_id "ERVLE_4q31.21e"; locus "ERVLE_4q31.21e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1162"; model_cov "747"; model_pct "13.2"; chr4 rmsk exon 144890167 144890379 819 + . gene_id "ERVLE_4q31.21e"; transcript_id "ERVLE_4q31.21e"; locus "ERVLE_4q31.21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1162"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-5272"; repStart "183"; chr4 rmsk exon 144890569 144891006 819 + . gene_id "ERVLE_4q31.21e"; transcript_id "ERVLE_4q31.21e"; locus "ERVLE_4q31.21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1162"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "-4783"; repStart "349"; ### HERVL_4q31.21a ### chr4 rmsk gene 144915445 144916512 . - . gene_id "HERVL_4q31.21a"; transcript_id "HERVL_4q31.21a"; locus "HERVL_4q31.21a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0432"; model_cov "626"; model_pct "11.1"; chr4 rmsk exon 144915445 144915893 2944 - . gene_id "HERVL_4q31.21a"; transcript_id "HERVL_4q31.21a"; locus "HERVL_4q31.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0432"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 144915894 144916512 4899 - . gene_id "HERVL_4q31.21a"; transcript_id "HERVL_4q31.21a"; locus "HERVL_4q31.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0432"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5028"; repStart "0"; ### MER61_4q31.21c ### chr4 rmsk gene 144953732 144956610 . + . gene_id "MER61_4q31.21c"; transcript_id "MER61_4q31.21c"; locus "MER61_4q31.21c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0137"; model_cov "3023"; model_pct "57.9"; chr4 rmsk exon 144953732 144954076 1784 + . gene_id "MER61_4q31.21c"; transcript_id "MER61_4q31.21c"; locus "MER61_4q31.21c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0137"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr4 rmsk exon 144954077 144954903 3461 + . gene_id "MER61_4q31.21c"; transcript_id "MER61_4q31.21c"; locus "MER61_4q31.21c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0137"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "2"; chr4 rmsk exon 144954904 144956610 5044 + . gene_id "MER61_4q31.21c"; transcript_id "MER61_4q31.21c"; locus "MER61_4q31.21c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0137"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "-2074"; repStart "958"; ### MER61_4q31.21d ### chr4 rmsk gene 144961310 144962934 . + . gene_id "MER61_4q31.21d"; transcript_id "MER61_4q31.21d"; locus "MER61_4q31.21d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0138"; model_cov "977"; model_pct "18.7"; chr4 rmsk exon 144961310 144961397 5461 + . gene_id "MER61_4q31.21d"; transcript_id "MER61_4q31.21d"; locus "MER61_4q31.21d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0138"; repClass "LTR"; repEnd "4304"; repFamily "ERV1"; repLeft "-913"; repStart "4239"; chr4 rmsk exon 144961682 144962580 5461 + . gene_id "MER61_4q31.21d"; transcript_id "MER61_4q31.21d"; locus "MER61_4q31.21d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0138"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4305"; chr4 rmsk exon 144962581 144962934 1597 + . gene_id "MER61_4q31.21d"; transcript_id "MER61_4q31.21d"; locus "MER61_4q31.21d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0138"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HERVL_4q31.21b ### chr4 rmsk gene 145028090 145034711 . + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0433"; model_cov "5651"; model_pct "99.9"; chr4 rmsk exon 145028090 145028526 2725 + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0433"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 145028529 145034139 44390 + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0433"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr4 rmsk exon 145034140 145034543 2775 + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0433"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "-110"; chr4 rmsk exon 145034577 145034600 321 + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0433"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-36"; repStart "386"; chr4 rmsk exon 145034656 145034711 347 + . gene_id "HERVL_4q31.21b"; transcript_id "HERVL_4q31.21b"; locus "HERVL_4q31.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0433"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "389"; ### ERVLE_4q31.21f ### chr4 rmsk gene 145206813 145210318 . - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1163"; model_cov "2700"; model_pct "47.6"; chr4 rmsk exon 145206813 145206920 279 - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1163"; repClass "LTR"; repEnd "5604"; repFamily "ERVL"; repLeft "5501"; repStart "-63"; chr4 rmsk exon 145207150 145208271 2343 - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1163"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "4005"; repStart "-384"; chr4 rmsk exon 145208387 145208760 2637 - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1163"; repClass "LTR"; repEnd "2086"; repFamily "ERVL"; repLeft "1729"; repStart "-3581"; chr4 rmsk exon 145209072 145209851 2637 - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1163"; repClass "LTR"; repEnd "1728"; repFamily "ERVL"; repLeft "929"; repStart "-3939"; chr4 rmsk exon 145210158 145210318 2637 - . gene_id "ERVLE_4q31.21f"; transcript_id "ERVLE_4q31.21f"; locus "ERVLE_4q31.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1163"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "765"; repStart "-4739"; ### HERVH_4q31.21a ### chr4 rmsk gene 145252689 145256982 . - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0423"; model_cov "3452"; model_pct "44.8"; chr4 rmsk exon 145252689 145253074 2740 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 145253075 145253623 3821 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr4 rmsk exon 145253617 145253878 1609 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chr4 rmsk exon 145253869 145254438 3555 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "4552"; repFamily "ERV1"; repLeft "4001"; repStart "-3161"; chr4 rmsk exon 145254442 145256081 10202 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "800"; repStart "-5286"; chr4 rmsk exon 145256137 145256563 1195 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr4 rmsk exon 145256564 145256982 3127 - . gene_id "HERVH_4q31.21a"; transcript_id "HERVH_4q31.21a"; locus "HERVH_4q31.21a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0423"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_4q31.21e ### chr4 rmsk gene 145300335 145302957 . - . gene_id "ERV316A3_4q31.21e"; transcript_id "ERV316A3_4q31.21e"; locus "ERV316A3_4q31.21e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0855"; model_cov "2178"; model_pct "41.7"; chr4 rmsk exon 145300335 145300618 774 - . gene_id "ERV316A3_4q31.21e"; transcript_id "ERV316A3_4q31.21e"; locus "ERV316A3_4q31.21e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0855"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "128"; repStart "-7"; chr4 rmsk exon 145300599 145300767 430 - . gene_id "ERV316A3_4q31.21e"; transcript_id "ERV316A3_4q31.21e"; locus "ERV316A3_4q31.21e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0855"; repClass "LTR"; repEnd "205"; repFamily "ERVL"; repLeft "36"; repStart "-217"; chr4 rmsk exon 145300784 145302086 3000 - . gene_id "ERV316A3_4q31.21e"; transcript_id "ERV316A3_4q31.21e"; locus "ERV316A3_4q31.21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0855"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "3831"; repStart "-55"; chr4 rmsk exon 145302155 145302957 1879 - . gene_id "ERV316A3_4q31.21e"; transcript_id "ERV316A3_4q31.21e"; locus "ERV316A3_4q31.21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0855"; repClass "LTR"; repEnd "2075"; repFamily "ERVL"; repLeft "1237"; repStart "-3151"; ### ERV316A3_4q31.21f ### chr4 rmsk gene 145438648 145439497 . + . gene_id "ERV316A3_4q31.21f"; transcript_id "ERV316A3_4q31.21f"; locus "ERV316A3_4q31.21f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0857"; model_cov "744"; model_pct "14.2"; chr4 rmsk exon 145438648 145438742 500 + . gene_id "ERV316A3_4q31.21f"; transcript_id "ERV316A3_4q31.21f"; locus "ERV316A3_4q31.21f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0857"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "366"; chr4 rmsk exon 145438745 145438955 421 + . gene_id "ERV316A3_4q31.21f"; transcript_id "ERV316A3_4q31.21f"; locus "ERV316A3_4q31.21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0857"; repClass "LTR"; repEnd "205"; repFamily "ERVL"; repLeft "-5021"; repStart "7"; chr4 rmsk exon 145438945 145439497 1384 + . gene_id "ERV316A3_4q31.21f"; transcript_id "ERV316A3_4q31.21f"; locus "ERV316A3_4q31.21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0857"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "-443"; repStart "4237"; ### HERVH_4q31.21b ### chr4 rmsk gene 145698823 145703503 . + . gene_id "HERVH_4q31.21b"; transcript_id "HERVH_4q31.21b"; locus "HERVH_4q31.21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0424"; model_cov "6210"; model_pct "80.5"; chr4 rmsk exon 145698823 145699272 3567 + . gene_id "HERVH_4q31.21b"; transcript_id "HERVH_4q31.21b"; locus "HERVH_4q31.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0424"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 145699275 145702680 16270 + . gene_id "HERVH_4q31.21b"; transcript_id "HERVH_4q31.21b"; locus "HERVH_4q31.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0424"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "1"; chr4 rmsk exon 145702678 145703055 2571 + . gene_id "HERVH_4q31.21b"; transcript_id "HERVH_4q31.21b"; locus "HERVH_4q31.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0424"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7321"; chr4 rmsk exon 145703056 145703503 3660 + . gene_id "HERVH_4q31.21b"; transcript_id "HERVH_4q31.21b"; locus "HERVH_4q31.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0424"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFRD_4q31.21 ### chr4 rmsk gene 145704708 145710863 . - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0063"; model_cov "4955"; model_pct "68.8"; chr4 rmsk exon 145704708 145705463 4285 - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0063"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr4 rmsk exon 145705464 145706645 5936 - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0063"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "5365"; repStart "-8"; chr4 rmsk exon 145707239 145708303 3263 - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0063"; repClass "LTR"; repEnd "6400"; repFamily "ERV1"; repLeft "5113"; repStart "-805"; chr4 rmsk exon 145708311 145710059 11314 - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0063"; repClass "LTR"; repEnd "1837"; repFamily "ERV1"; repLeft "1"; repStart "-5368"; chr4 rmsk exon 145710134 145710863 4225 - . gene_id "HERVFRD_4q31.21"; transcript_id "HERVFRD_4q31.21"; locus "HERVFRD_4q31.21"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0063"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "-12"; ### HERVH_4q31.21c ### chr4 rmsk gene 145832612 145838502 . + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0425"; model_cov "5046"; model_pct "65.4"; chr4 rmsk exon 145832612 145833009 3050 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 145833012 145836291 21221 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr4 rmsk exon 145836282 145836786 3504 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 145836789 145837454 4430 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 145837456 145837679 1400 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 145837678 145838039 2324 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "7698"; repFamily "ERV1"; repLeft "-15"; repStart "7322"; chr4 rmsk exon 145838055 145838502 3325 + . gene_id "HERVH_4q31.21c"; transcript_id "HERVH_4q31.21c"; locus "HERVH_4q31.21c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0425"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q31.22a ### chr4 rmsk gene 146063634 146067777 . + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0858"; model_cov "2319"; model_pct "44.4"; chr4 rmsk exon 146063634 146064074 1666 + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0858"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-5"; repStart "1"; chr4 rmsk exon 146064077 146064244 470 + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0858"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-4818"; repStart "237"; chr4 rmsk exon 146065242 146065936 1728 + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0858"; repClass "LTR"; repEnd "1066"; repFamily "ERVL"; repLeft "-4160"; repStart "330"; chr4 rmsk exon 146065946 146067370 4233 + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0858"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-21"; repStart "3793"; chr4 rmsk exon 146067384 146067777 862 + . gene_id "ERV316A3_4q31.22a"; transcript_id "ERV316A3_4q31.22a"; locus "ERV316A3_4q31.22a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0858"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-80"; repStart "18"; ### ERVLE_4q31.22a ### chr4 rmsk gene 146120403 146121348 . + . gene_id "ERVLE_4q31.22a"; transcript_id "ERVLE_4q31.22a"; locus "ERVLE_4q31.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1166"; model_cov "636"; model_pct "11.2"; chr4 rmsk exon 146120403 146120557 264 + . gene_id "ERVLE_4q31.22a"; transcript_id "ERVLE_4q31.22a"; locus "ERVLE_4q31.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1166"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-5207"; repStart "298"; chr4 rmsk exon 146120874 146121348 1044 + . gene_id "ERVLE_4q31.22a"; transcript_id "ERVLE_4q31.22a"; locus "ERVLE_4q31.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1166"; repClass "LTR"; repEnd "2989"; repFamily "ERVL"; repLeft "-2678"; repStart "2515"; ### ERVLB4_4q31.22 ### chr4 rmsk gene 146145009 146148190 . + . gene_id "ERVLB4_4q31.22"; transcript_id "ERVLB4_4q31.22"; locus "ERVLB4_4q31.22"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0535"; model_cov "2403"; model_pct "42.1"; chr4 rmsk exon 146145009 146146220 1438 + . gene_id "ERVLB4_4q31.22"; transcript_id "ERVLB4_4q31.22"; locus "ERVLB4_4q31.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0535"; repClass "LTR"; repEnd "2218"; repFamily "ERVL"; repLeft "-3496"; repStart "855"; chr4 rmsk exon 146146427 146146773 1438 + . gene_id "ERVLB4_4q31.22"; transcript_id "ERVLB4_4q31.22"; locus "ERVLB4_4q31.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0535"; repClass "LTR"; repEnd "2595"; repFamily "ERVL"; repLeft "-3119"; repStart "2219"; chr4 rmsk exon 146147529 146147944 1224 + . gene_id "ERVLB4_4q31.22"; transcript_id "ERVLB4_4q31.22"; locus "ERVLB4_4q31.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0535"; repClass "LTR"; repEnd "3004"; repFamily "ERVL"; repLeft "-2710"; repStart "2594"; chr4 rmsk exon 146147950 146148190 576 + . gene_id "ERVLB4_4q31.22"; transcript_id "ERVLB4_4q31.22"; locus "ERVLB4_4q31.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0535"; repClass "LTR"; repEnd "3623"; repFamily "ERVL"; repLeft "-2091"; repStart "3369"; ### HERVE_4q31.22 ### chr4 rmsk gene 146526145 146530559 . + . gene_id "HERVE_4q31.22"; transcript_id "HERVE_4q31.22"; locus "HERVE_4q31.22"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0045"; model_cov "4191"; model_pct "53.6"; chr4 rmsk exon 146526145 146526358 1399 + . gene_id "HERVE_4q31.22"; transcript_id "HERVE_4q31.22"; locus "HERVE_4q31.22"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0045"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "248"; chr4 rmsk exon 146526359 146530559 30342 + . gene_id "HERVE_4q31.22"; transcript_id "HERVE_4q31.22"; locus "HERVE_4q31.22"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0045"; repClass "LTR"; repEnd "4192"; repFamily "ERV1"; repLeft "-3621"; repStart "1"; ### HERVL_4q31.22 ### chr4 rmsk gene 146536314 146538445 . - . gene_id "HERVL_4q31.22"; transcript_id "HERVL_4q31.22"; locus "HERVL_4q31.22"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0434"; model_cov "1307"; model_pct "23.1"; chr4 rmsk exon 146536314 146536762 2840 - . gene_id "HERVL_4q31.22"; transcript_id "HERVL_4q31.22"; locus "HERVL_4q31.22"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0434"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "12"; repStart "-2"; chr4 rmsk exon 146536764 146537888 9832 - . gene_id "HERVL_4q31.22"; transcript_id "HERVL_4q31.22"; locus "HERVL_4q31.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0434"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4520"; repStart "0"; chr4 rmsk exon 146538198 146538369 9832 - . gene_id "HERVL_4q31.22"; transcript_id "HERVL_4q31.22"; locus "HERVL_4q31.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0434"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "4346"; repStart "-1135"; chr4 rmsk exon 146538370 146538445 586 - . gene_id "HERVL_4q31.22"; transcript_id "HERVL_4q31.22"; locus "HERVL_4q31.22"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0434"; repClass "LTR"; repEnd "76"; repFamily "ERVL"; repLeft "1"; repStart "-377"; ### MER4B_4q31.22 ### chr4 rmsk gene 146734844 146736712 . + . gene_id "MER4B_4q31.22"; transcript_id "MER4B_4q31.22"; locus "MER4B_4q31.22"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0142"; model_cov "1887"; model_pct "27.9"; chr4 rmsk exon 146734844 146736712 9356 + . gene_id "MER4B_4q31.22"; transcript_id "MER4B_4q31.22"; locus "MER4B_4q31.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0142"; repClass "LTR"; repEnd "4972"; repFamily "ERV1"; repLeft "-1786"; repStart "3085"; ### ERVLE_4q31.22b ### chr4 rmsk gene 146950551 146952319 . + . gene_id "ERVLE_4q31.22b"; transcript_id "ERVLE_4q31.22b"; locus "ERVLE_4q31.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1167"; model_cov "1001"; model_pct "17.7"; chr4 rmsk exon 146950551 146951115 884 + . gene_id "ERVLE_4q31.22b"; transcript_id "ERVLE_4q31.22b"; locus "ERVLE_4q31.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1167"; repClass "LTR"; repEnd "1927"; repFamily "ERVL"; repLeft "-3740"; repStart "1354"; chr4 rmsk exon 146951921 146952319 684 + . gene_id "ERVLE_4q31.22b"; transcript_id "ERVLE_4q31.22b"; locus "ERVLE_4q31.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1167"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "-2874"; repStart "2365"; ### ERVL_4q31.22 ### chr4 rmsk gene 146957280 146958202 . + . gene_id "ERVL_4q31.22"; transcript_id "ERVL_4q31.22"; locus "ERVL_4q31.22"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0118"; model_cov "846"; model_pct "14.7"; chr4 rmsk exon 146957280 146957696 1052 + . gene_id "ERVL_4q31.22"; transcript_id "ERVL_4q31.22"; locus "ERVL_4q31.22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0118"; repClass "LTR"; repEnd "4484"; repFamily "ERVL"; repLeft "-1273"; repStart "4054"; chr4 rmsk exon 146957747 146957971 532 + . gene_id "ERVL_4q31.22"; transcript_id "ERVL_4q31.22"; locus "ERVL_4q31.22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0118"; repClass "LTR"; repEnd "4787"; repFamily "ERVL"; repLeft "-970"; repStart "4548"; chr4 rmsk exon 146958050 146958202 497 + . gene_id "ERVL_4q31.22"; transcript_id "ERVL_4q31.22"; locus "ERVL_4q31.22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0118"; repClass "LTR"; repEnd "5055"; repFamily "ERVL"; repLeft "-702"; repStart "4878"; ### ERV316A3_4q31.22b ### chr4 rmsk gene 146984610 146986702 . - . gene_id "ERV316A3_4q31.22b"; transcript_id "ERV316A3_4q31.22b"; locus "ERV316A3_4q31.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0859"; model_cov "1768"; model_pct "33.8"; chr4 rmsk exon 146984610 146985035 1294 - . gene_id "ERV316A3_4q31.22b"; transcript_id "ERV316A3_4q31.22b"; locus "ERV316A3_4q31.22b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0859"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr4 rmsk exon 146985041 146986702 5122 - . gene_id "ERV316A3_4q31.22b"; transcript_id "ERV316A3_4q31.22b"; locus "ERV316A3_4q31.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0859"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "3452"; repStart "-6"; ### ERVLE_4q31.23a ### chr4 rmsk gene 147566855 147569445 . - . gene_id "ERVLE_4q31.23a"; transcript_id "ERVLE_4q31.23a"; locus "ERVLE_4q31.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1168"; model_cov "1910"; model_pct "33.7"; chr4 rmsk exon 147566855 147567666 3344 - . gene_id "ERVLE_4q31.23a"; transcript_id "ERVLE_4q31.23a"; locus "ERVLE_4q31.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1168"; repClass "LTR"; repEnd "3302"; repFamily "ERVL"; repLeft "2461"; repStart "-2365"; chr4 rmsk exon 147568380 147569445 3344 - . gene_id "ERVLE_4q31.23a"; transcript_id "ERVLE_4q31.23a"; locus "ERVLE_4q31.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1168"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "1391"; repStart "-3207"; ### ERVLE_4q31.23b ### chr4 rmsk gene 147607257 147609206 . - . gene_id "ERVLE_4q31.23b"; transcript_id "ERVLE_4q31.23b"; locus "ERVLE_4q31.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1170"; model_cov "2006"; model_pct "35.4"; chr4 rmsk exon 147607257 147607407 417 - . gene_id "ERVLE_4q31.23b"; transcript_id "ERVLE_4q31.23b"; locus "ERVLE_4q31.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1170"; repClass "LTR"; repEnd "3461"; repFamily "ERVL"; repLeft "3308"; repStart "-2206"; chr4 rmsk exon 147607430 147607908 1056 - . gene_id "ERVLE_4q31.23b"; transcript_id "ERVLE_4q31.23b"; locus "ERVLE_4q31.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1170"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "2698"; repStart "-2519"; chr4 rmsk exon 147607909 147608398 1428 - . gene_id "ERVLE_4q31.23b"; transcript_id "ERVLE_4q31.23b"; locus "ERVLE_4q31.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1170"; repClass "LTR"; repEnd "2557"; repFamily "ERVL"; repLeft "2060"; repStart "-3110"; chr4 rmsk exon 147608462 147609206 910 - . gene_id "ERVLE_4q31.23b"; transcript_id "ERVLE_4q31.23b"; locus "ERVLE_4q31.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1170"; repClass "LTR"; repEnd "2098"; repFamily "ERVL"; repLeft "1192"; repStart "-3569"; ### MER61_4q31.23 ### chr4 rmsk gene 148298890 148305043 . + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0139"; model_cov "4364"; model_pct "83.6"; chr4 rmsk exon 148298890 148299234 2142 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0139"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "-1"; repStart "86"; chr4 rmsk exon 148299252 148299467 711 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "210"; repFamily "ERV1"; repLeft "-5007"; repStart "18"; chr4 rmsk exon 148299487 148299800 1163 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-4763"; repStart "182"; chr4 rmsk exon 148299819 148300588 3304 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "1938"; repFamily "ERV1"; repLeft "-3279"; repStart "1781"; chr4 rmsk exon 148300872 148301395 3304 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "2444"; repFamily "ERV1"; repLeft "-2773"; repStart "1939"; chr4 rmsk exon 148301381 148302726 19974 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "3355"; repFamily "ERV1"; repLeft "-1862"; repStart "1978"; chr4 rmsk exon 148302869 148304685 19974 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0139"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3356"; chr4 rmsk exon 148304703 148305043 2142 + . gene_id "MER61_4q31.23"; transcript_id "MER61_4q31.23"; locus "MER61_4q31.23"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0139"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "86"; ### ERVLE_4q31.23c ### chr4 rmsk gene 148613113 148614226 . - . gene_id "ERVLE_4q31.23c"; transcript_id "ERVLE_4q31.23c"; locus "ERVLE_4q31.23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1171"; model_cov "1157"; model_pct "20.4"; chr4 rmsk exon 148613113 148614226 522 - . gene_id "ERVLE_4q31.23c"; transcript_id "ERVLE_4q31.23c"; locus "ERVLE_4q31.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1171"; repClass "LTR"; repEnd "2621"; repFamily "ERVL"; repLeft "1464"; repStart "-3046"; ### ERV316A3_4q31.23a ### chr4 rmsk gene 148720776 148721538 . - . gene_id "ERV316A3_4q31.23a"; transcript_id "ERV316A3_4q31.23a"; locus "ERV316A3_4q31.23a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0860"; model_cov "617"; model_pct "11.8"; chr4 rmsk exon 148720776 148720908 273 - . gene_id "ERV316A3_4q31.23a"; transcript_id "ERV316A3_4q31.23a"; locus "ERV316A3_4q31.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0860"; repClass "LTR"; repEnd "3017"; repFamily "ERVL"; repLeft "2881"; repStart "-2209"; chr4 rmsk exon 148721073 148721538 328 - . gene_id "ERV316A3_4q31.23a"; transcript_id "ERV316A3_4q31.23a"; locus "ERV316A3_4q31.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0860"; repClass "LTR"; repEnd "2989"; repFamily "ERVL"; repLeft "2508"; repStart "-2237"; ### ERV316A3_4q31.23b ### chr4 rmsk gene 148769793 148771067 . + . gene_id "ERV316A3_4q31.23b"; transcript_id "ERV316A3_4q31.23b"; locus "ERV316A3_4q31.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0861"; model_cov "909"; model_pct "17.4"; chr4 rmsk exon 148769793 148770508 1417 + . gene_id "ERV316A3_4q31.23b"; transcript_id "ERV316A3_4q31.23b"; locus "ERV316A3_4q31.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0861"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "-3412"; repStart "1118"; chr4 rmsk exon 148770507 148770709 416 + . gene_id "ERV316A3_4q31.23b"; transcript_id "ERV316A3_4q31.23b"; locus "ERV316A3_4q31.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0861"; repClass "LTR"; repEnd "2356"; repFamily "ERVL"; repLeft "-2870"; repStart "2143"; chr4 rmsk exon 148770710 148770782 229 + . gene_id "ERV316A3_4q31.23b"; transcript_id "ERV316A3_4q31.23b"; locus "ERV316A3_4q31.23b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0861"; repClass "LTR"; repEnd "110"; repFamily "ERVL"; repLeft "-328"; repStart "36"; chr4 rmsk exon 148770800 148771067 719 + . gene_id "ERV316A3_4q31.23b"; transcript_id "ERV316A3_4q31.23b"; locus "ERV316A3_4q31.23b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0861"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-7"; repStart "155"; ### ERVLB4_4q31.23 ### chr4 rmsk gene 149020375 149026145 . + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0537"; model_cov "4462"; model_pct "78.1"; chr4 rmsk exon 149020375 149020713 836 + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0537"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "-287"; repStart "14"; chr4 rmsk exon 149020714 149023399 6896 + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0537"; repClass "LTR"; repEnd "3674"; repFamily "ERVL"; repLeft "-2040"; repStart "681"; chr4 rmsk exon 149023396 149024394 2979 + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0537"; repClass "LTR"; repEnd "5353"; repFamily "ERVL"; repLeft "-361"; repStart "4243"; chr4 rmsk exon 149025244 149025478 496 + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0537"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5355"; chr4 rmsk exon 149025502 149026145 1272 + . gene_id "ERVLB4_4q31.23"; transcript_id "ERVLB4_4q31.23"; locus "ERVLB4_4q31.23"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0537"; repClass "LTR"; repEnd "644"; repFamily "ERVL"; repLeft "-19"; repStart "18"; ### ERV316A3_4q31.23c ### chr4 rmsk gene 149027518 149031932 . - . gene_id "ERV316A3_4q31.23c"; transcript_id "ERV316A3_4q31.23c"; locus "ERV316A3_4q31.23c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0862"; model_cov "3551"; model_pct "67.9"; chr4 rmsk exon 149027518 149027960 1268 - . gene_id "ERV316A3_4q31.23c"; transcript_id "ERV316A3_4q31.23c"; locus "ERV316A3_4q31.23c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0862"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "2"; repStart "-4"; chr4 rmsk exon 149028019 149028650 1672 - . gene_id "ERV316A3_4q31.23c"; transcript_id "ERV316A3_4q31.23c"; locus "ERV316A3_4q31.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0862"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "4508"; repStart "-68"; chr4 rmsk exon 149028715 149029223 5256 - . gene_id "ERV316A3_4q31.23c"; transcript_id "ERV316A3_4q31.23c"; locus "ERV316A3_4q31.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0862"; repClass "LTR"; repEnd "2934"; repFamily "ERVL"; repLeft "2412"; repStart "-2292"; chr4 rmsk exon 149029569 149031932 5256 - . gene_id "ERV316A3_4q31.23c"; transcript_id "ERV316A3_4q31.23c"; locus "ERV316A3_4q31.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0862"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "32"; repStart "-2815"; ### HERVL_4q31.23a ### chr4 rmsk gene 149038742 149046697 . + . gene_id "HERVL_4q31.23a"; transcript_id "HERVL_4q31.23a"; locus "HERVL_4q31.23a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0435"; model_cov "5660"; model_pct "100.0"; chr4 rmsk exon 149038742 149039169 2817 + . gene_id "HERVL_4q31.23a"; transcript_id "HERVL_4q31.23a"; locus "HERVL_4q31.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0435"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-13"; repStart "1"; chr4 rmsk exon 149039200 149040911 13533 + . gene_id "HERVL_4q31.23a"; transcript_id "HERVL_4q31.23a"; locus "HERVL_4q31.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0435"; repClass "LTR"; repEnd "1725"; repFamily "ERVL"; repLeft "-3929"; repStart "3"; chr4 rmsk exon 149042372 149046249 30371 + . gene_id "HERVL_4q31.23a"; transcript_id "HERVL_4q31.23a"; locus "HERVL_4q31.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0435"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1716"; chr4 rmsk exon 149046250 149046697 2814 + . gene_id "HERVL_4q31.23a"; transcript_id "HERVL_4q31.23a"; locus "HERVL_4q31.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0435"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-30"; repStart "-110"; ### ERV316A3_4q31.23d ### chr4 rmsk gene 149306310 149313049 . + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0863"; model_cov "4319"; model_pct "82.6"; chr4 rmsk exon 149306310 149306609 991 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "210"; chr4 rmsk exon 149306894 149307629 1871 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "814"; repFamily "ERVL"; repLeft "-4412"; repStart "39"; chr4 rmsk exon 149308138 149309253 1871 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "2354"; repFamily "ERVL"; repLeft "-2872"; repStart "1219"; chr4 rmsk exon 149309890 149310999 1696 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "-1504"; repStart "2516"; chr4 rmsk exon 149311490 149312009 899 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "4304"; repFamily "ERVL"; repLeft "-922"; repStart "3632"; chr4 rmsk exon 149312013 149312535 432 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "-82"; repStart "4613"; chr4 rmsk exon 149312676 149313049 761 + . gene_id "ERV316A3_4q31.23d"; transcript_id "ERV316A3_4q31.23d"; locus "ERV316A3_4q31.23d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0863"; repClass "LTR"; repEnd "466"; repFamily "ERVL"; repLeft "-23"; repStart "77"; ### HERVL_4q31.23b ### chr4 rmsk gene 149514675 149518006 . + . gene_id "HERVL_4q31.23b"; transcript_id "HERVL_4q31.23b"; locus "HERVL_4q31.23b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0436"; model_cov "2447"; model_pct "43.3"; chr4 rmsk exon 149514675 149515071 3043 + . gene_id "HERVL_4q31.23b"; transcript_id "HERVL_4q31.23b"; locus "HERVL_4q31.23b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0436"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr4 rmsk exon 149515109 149517562 18930 + . gene_id "HERVL_4q31.23b"; transcript_id "HERVL_4q31.23b"; locus "HERVL_4q31.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0436"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3207"; chr4 rmsk exon 149517563 149518006 3188 + . gene_id "HERVL_4q31.23b"; transcript_id "HERVL_4q31.23b"; locus "HERVL_4q31.23b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0436"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_4q31.3a ### chr4 rmsk gene 150769363 150772922 . - . gene_id "ERVLB4_4q31.3a"; transcript_id "ERVLB4_4q31.3a"; locus "ERVLB4_4q31.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0538"; model_cov "2632"; model_pct "46.1"; chr4 rmsk exon 150769363 150769778 1574 - . gene_id "ERVLB4_4q31.3a"; transcript_id "ERVLB4_4q31.3a"; locus "ERVLB4_4q31.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0538"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "1"; repStart "-53"; chr4 rmsk exon 150770457 150770586 4956 - . gene_id "ERVLB4_4q31.3a"; transcript_id "ERVLB4_4q31.3a"; locus "ERVLB4_4q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0538"; repClass "LTR"; repEnd "5509"; repFamily "ERVL"; repLeft "5364"; repStart "-205"; chr4 rmsk exon 150770628 150772922 18167 - . gene_id "ERVLB4_4q31.3a"; transcript_id "ERVLB4_4q31.3a"; locus "ERVLB4_4q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0538"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "2876"; repStart "-351"; ### ERVLB4_4q31.3b ### chr4 rmsk gene 150772965 150775324 . - . gene_id "ERVLB4_4q31.3b"; transcript_id "ERVLB4_4q31.3b"; locus "ERVLB4_4q31.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0539"; model_cov "1749"; model_pct "30.6"; chr4 rmsk exon 150772965 150774043 18167 - . gene_id "ERVLB4_4q31.3b"; transcript_id "ERVLB4_4q31.3b"; locus "ERVLB4_4q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0539"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "4193"; repStart "-351"; chr4 rmsk exon 150774733 150775324 18167 - . gene_id "ERVLB4_4q31.3b"; transcript_id "ERVLB4_4q31.3b"; locus "ERVLB4_4q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0539"; repClass "LTR"; repEnd "1816"; repFamily "ERVL"; repLeft "1237"; repStart "-3898"; ### HERVL40_4q31.3a ### chr4 rmsk gene 151111795 151114965 . + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0123"; model_cov "2155"; model_pct "39.0"; chr4 rmsk exon 151111795 151111814 1061 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "2069"; repFamily "ERVL"; repLeft "-3461"; repStart "2050"; chr4 rmsk exon 151111841 151112162 1061 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3124"; repStart "2070"; chr4 rmsk exon 151112161 151112531 2565 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "-2321"; repStart "2831"; chr4 rmsk exon 151112809 151113357 2565 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "3805"; repFamily "ERVL"; repLeft "-1725"; repStart "3210"; chr4 rmsk exon 151113698 151114527 3130 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "-1"; repStart "4702"; chr4 rmsk exon 151114568 151114965 1633 + . gene_id "HERVL40_4q31.3a"; transcript_id "HERVL40_4q31.3a"; locus "HERVL40_4q31.3a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0123"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-6"; repStart "39"; ### ERV316A3_4q31.3a ### chr4 rmsk gene 151331579 151332762 . - . gene_id "ERV316A3_4q31.3a"; transcript_id "ERV316A3_4q31.3a"; locus "ERV316A3_4q31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0864"; model_cov "699"; model_pct "13.4"; chr4 rmsk exon 151331579 151331827 704 - . gene_id "ERV316A3_4q31.3a"; transcript_id "ERV316A3_4q31.3a"; locus "ERV316A3_4q31.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0864"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "160"; repStart "0"; chr4 rmsk exon 151332055 151332762 2243 - . gene_id "ERV316A3_4q31.3a"; transcript_id "ERV316A3_4q31.3a"; locus "ERV316A3_4q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0864"; repClass "LTR"; repEnd "5095"; repFamily "ERVL"; repLeft "4396"; repStart "-131"; ### HERVH_4q31.3a ### chr4 rmsk gene 151812887 151818233 . - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0426"; model_cov "5048"; model_pct "65.4"; chr4 rmsk exon 151812887 151813260 2474 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "7710"; repFamily "ERV1"; repLeft "7324"; repStart "-3"; chr4 rmsk exon 151813261 151813476 1394 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 151813478 151814140 4307 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 151814143 151814635 3428 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr4 rmsk exon 151814635 151817828 18178 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr4 rmsk exon 151817831 151818233 2817 - . gene_id "HERVH_4q31.3a"; transcript_id "HERVH_4q31.3a"; locus "HERVH_4q31.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0426"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL32_4q31.3a ### chr4 rmsk gene 151895741 151898318 . - . gene_id "HERVL32_4q31.3a"; transcript_id "HERVL32_4q31.3a"; locus "HERVL32_4q31.3a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0014"; model_cov "1609"; model_pct "47.1"; chr4 rmsk exon 151895741 151896157 2016 - . gene_id "HERVL32_4q31.3a"; transcript_id "HERVL32_4q31.3a"; locus "HERVL32_4q31.3a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0014"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr4 rmsk exon 151896162 151896291 436 - . gene_id "HERVL32_4q31.3a"; transcript_id "HERVL32_4q31.3a"; locus "HERVL32_4q31.3a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0014"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "3286"; repStart "0"; chr4 rmsk exon 151896945 151897750 2638 - . gene_id "HERVL32_4q31.3a"; transcript_id "HERVL32_4q31.3a"; locus "HERVL32_4q31.3a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0014"; repClass "LTR"; repEnd "3213"; repFamily "ERVL"; repLeft "2391"; repStart "-205"; chr4 rmsk exon 151897755 151898318 6956 - . gene_id "HERVL32_4q31.3a"; transcript_id "HERVL32_4q31.3a"; locus "HERVL32_4q31.3a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0014"; repClass "LTR"; repEnd "-328"; repFamily "ERVL"; repLeft "-983"; repStart "-3746"; ### HERVL32_4q31.3b ### chr4 rmsk gene 151898732 151900889 . - . gene_id "HERVL32_4q31.3b"; transcript_id "HERVL32_4q31.3b"; locus "HERVL32_4q31.3b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0015"; model_cov "1643"; model_pct "48.1"; chr4 rmsk exon 151898732 151900366 6956 - . gene_id "HERVL32_4q31.3b"; transcript_id "HERVL32_4q31.3b"; locus "HERVL32_4q31.3b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0015"; repClass "LTR"; repEnd "1645"; repFamily "ERVL"; repLeft "2"; repStart "-1773"; chr4 rmsk exon 151900367 151900889 2146 - . gene_id "HERVL32_4q31.3b"; transcript_id "HERVL32_4q31.3b"; locus "HERVL32_4q31.3b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0015"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLE_4q31.3a ### chr4 rmsk gene 152499782 152500486 . - . gene_id "ERVLE_4q31.3a"; transcript_id "ERVLE_4q31.3a"; locus "ERVLE_4q31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1173"; model_cov "643"; model_pct "11.3"; chr4 rmsk exon 152499782 152499917 503 - . gene_id "ERVLE_4q31.3a"; transcript_id "ERVLE_4q31.3a"; locus "ERVLE_4q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1173"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1525"; repStart "-4005"; chr4 rmsk exon 152500004 152500486 990 - . gene_id "ERVLE_4q31.3a"; transcript_id "ERVLE_4q31.3a"; locus "ERVLE_4q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1173"; repClass "LTR"; repEnd "1402"; repFamily "ERVL"; repLeft "896"; repStart "-4265"; ### HERVH_4q31.3b ### chr4 rmsk gene 152741355 152747147 . - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0427"; model_cov "4916"; model_pct "63.7"; chr4 rmsk exon 152741355 152741795 3879 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 152741796 152742175 2571 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 152742174 152742390 1372 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 152742392 152743026 3983 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 152743029 152743528 3418 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 152743519 152743667 960 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 152743647 152746706 19659 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 152746707 152747147 3754 - . gene_id "HERVH_4q31.3b"; transcript_id "HERVH_4q31.3b"; locus "HERVH_4q31.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0427"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_4q31.3a ### chr4 rmsk gene 152920437 152921545 . - . gene_id "MER4_4q31.3a"; transcript_id "MER4_4q31.3a"; locus "MER4_4q31.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0255"; model_cov "1070"; model_pct "16.2"; chr4 rmsk exon 152920437 152921545 4070 - . gene_id "MER4_4q31.3a"; transcript_id "MER4_4q31.3a"; locus "MER4_4q31.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0255"; repClass "LTR"; repEnd "3805"; repFamily "ERV1"; repLeft "2735"; repStart "-2793"; ### MER4_4q31.3b ### chr4 rmsk gene 152925043 152927413 . - . gene_id "MER4_4q31.3b"; transcript_id "MER4_4q31.3b"; locus "MER4_4q31.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0256"; model_cov "2307"; model_pct "35.0"; chr4 rmsk exon 152925043 152926267 7768 - . gene_id "MER4_4q31.3b"; transcript_id "MER4_4q31.3b"; locus "MER4_4q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0256"; repClass "LTR"; repEnd "2310"; repFamily "ERV1"; repLeft "1113"; repStart "-4288"; chr4 rmsk exon 152926324 152927355 7768 - . gene_id "MER4_4q31.3b"; transcript_id "MER4_4q31.3b"; locus "MER4_4q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0256"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "2"; repStart "-5486"; chr4 rmsk exon 152927358 152927413 470 - . gene_id "MER4_4q31.3b"; transcript_id "MER4_4q31.3b"; locus "MER4_4q31.3b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0256"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "609"; repStart "0"; ### HERVL40_4q31.3b ### chr4 rmsk gene 153629956 153631694 . - . gene_id "HERVL40_4q31.3b"; transcript_id "HERVL40_4q31.3b"; locus "HERVL40_4q31.3b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0124"; model_cov "1429"; model_pct "25.8"; chr4 rmsk exon 153629956 153630143 676 - . gene_id "HERVL40_4q31.3b"; transcript_id "HERVL40_4q31.3b"; locus "HERVL40_4q31.3b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0124"; repClass "LTR"; repEnd "196"; repFamily "ERVL"; repLeft "1"; repStart "-323"; chr4 rmsk exon 153630148 153630664 1098 - . gene_id "HERVL40_4q31.3b"; transcript_id "HERVL40_4q31.3b"; locus "HERVL40_4q31.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0124"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "4586"; repStart "-150"; chr4 rmsk exon 153630731 153631366 2220 - . gene_id "HERVL40_4q31.3b"; transcript_id "HERVL40_4q31.3b"; locus "HERVL40_4q31.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0124"; repClass "LTR"; repEnd "3517"; repFamily "ERVL"; repLeft "2882"; repStart "-2013"; chr4 rmsk exon 153631369 153631694 1233 - . gene_id "HERVL40_4q31.3b"; transcript_id "HERVL40_4q31.3b"; locus "HERVL40_4q31.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0124"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "3"; repStart "-131"; ### HML3_4q31.3 ### chr4 rmsk gene 153688368 153694427 . - . gene_id "HML3_4q31.3"; transcript_id "HML3_4q31.3"; locus "HML3_4q31.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0078"; model_cov "5061"; model_pct "84.1"; chr4 rmsk exon 153688368 153688872 3866 - . gene_id "HML3_4q31.3"; transcript_id "HML3_4q31.3"; locus "HML3_4q31.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0078"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "4"; repStart "0"; chr4 rmsk exon 153688875 153693253 33703 - . gene_id "HML3_4q31.3"; transcript_id "HML3_4q31.3"; locus "HML3_4q31.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0078"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1638"; repStart "0"; chr4 rmsk exon 153693250 153693918 4750 - . gene_id "HML3_4q31.3"; transcript_id "HML3_4q31.3"; locus "HML3_4q31.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0078"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "1"; repStart "-5342"; chr4 rmsk exon 153693919 153694427 3985 - . gene_id "HML3_4q31.3"; transcript_id "HML3_4q31.3"; locus "HML3_4q31.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0078"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER34B_4q31.3 ### chr4 rmsk gene 153696581 153699612 . + . gene_id "MER34B_4q31.3"; transcript_id "MER34B_4q31.3"; locus "MER34B_4q31.3"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0092"; model_cov "2483"; model_pct "46.4"; chr4 rmsk exon 153696581 153696767 371 + . gene_id "MER34B_4q31.3"; transcript_id "MER34B_4q31.3"; locus "MER34B_4q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0092"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "-2963"; repStart "2301"; chr4 rmsk exon 153696876 153698752 3267 + . gene_id "MER34B_4q31.3"; transcript_id "MER34B_4q31.3"; locus "MER34B_4q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0092"; repClass "LTR"; repEnd "3249"; repFamily "ERV1"; repLeft "-2107"; repStart "1279"; chr4 rmsk exon 153699182 153699612 823 + . gene_id "MER34B_4q31.3"; transcript_id "MER34B_4q31.3"; locus "MER34B_4q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0092"; repClass "LTR"; repEnd "4473"; repFamily "ERV1"; repLeft "-883"; repStart "4052"; ### ERVLE_4q31.3b ### chr4 rmsk gene 153879148 153884127 . + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1174"; model_cov "1884"; model_pct "33.2"; chr4 rmsk exon 153879148 153879842 3637 + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1174"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "-1359"; repStart "3565"; chr4 rmsk exon 153882209 153882873 3637 + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1174"; repClass "LTR"; repEnd "5280"; repFamily "ERVL"; repLeft "-387"; repStart "4604"; chr4 rmsk exon 153882864 153883072 1572 + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1174"; repClass "LTR"; repEnd "5401"; repFamily "ERVL"; repLeft "-266"; repStart "5168"; chr4 rmsk exon 153883306 153883525 1572 + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1174"; repClass "LTR"; repEnd "5634"; repFamily "ERVL"; repLeft "-33"; repStart "5402"; chr4 rmsk exon 153883546 153884127 776 + . gene_id "ERVLE_4q31.3b"; transcript_id "ERVLE_4q31.3b"; locus "ERVLE_4q31.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1174"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### HERVH_4q31.3c ### chr4 rmsk gene 154056546 154063805 . + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0428"; model_cov "6289"; model_pct "81.5"; chr4 rmsk exon 154056546 154056954 2133 + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0428"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 154056955 154057411 1795 + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0428"; repClass "LTR"; repEnd "497"; repFamily "ERV1"; repLeft "-7216"; repStart "1"; chr4 rmsk exon 154057433 154062819 18472 + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0428"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "779"; chr4 rmsk exon 154062813 154063389 3366 + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0428"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr4 rmsk exon 154063390 154063805 2261 + . gene_id "HERVH_4q31.3c"; transcript_id "HERVH_4q31.3c"; locus "HERVH_4q31.3c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0428"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q31.3c ### chr4 rmsk gene 154309666 154310865 . + . gene_id "ERVLE_4q31.3c"; transcript_id "ERVLE_4q31.3c"; locus "ERVLE_4q31.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1175"; model_cov "953"; model_pct "16.8"; chr4 rmsk exon 154309666 154309997 264 + . gene_id "ERVLE_4q31.3c"; transcript_id "ERVLE_4q31.3c"; locus "ERVLE_4q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1175"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "-5286"; repStart "47"; chr4 rmsk exon 154310093 154310643 886 + . gene_id "ERVLE_4q31.3c"; transcript_id "ERVLE_4q31.3c"; locus "ERVLE_4q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1175"; repClass "LTR"; repEnd "1351"; repFamily "ERVL"; repLeft "-4316"; repStart "807"; chr4 rmsk exon 154310790 154310865 433 + . gene_id "ERVLE_4q31.3c"; transcript_id "ERVLE_4q31.3c"; locus "ERVLE_4q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1175"; repClass "LTR"; repEnd "2738"; repFamily "ERVL"; repLeft "-2929"; repStart "2663"; ### ERVLB4_4q31.3c ### chr4 rmsk gene 154450474 154452066 . + . gene_id "ERVLB4_4q31.3c"; transcript_id "ERVLB4_4q31.3c"; locus "ERVLB4_4q31.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0540"; model_cov "1360"; model_pct "23.8"; chr4 rmsk exon 154450474 154450551 6720 + . gene_id "ERVLB4_4q31.3c"; transcript_id "ERVLB4_4q31.3c"; locus "ERVLB4_4q31.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0540"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "-2875"; repStart "2762"; chr4 rmsk exon 154450849 154452066 6720 + . gene_id "ERVLB4_4q31.3c"; transcript_id "ERVLB4_4q31.3c"; locus "ERVLB4_4q31.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0540"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1591"; repStart "2840"; ### ERV316A3_4q31.3b ### chr4 rmsk gene 154473233 154474652 . + . gene_id "ERV316A3_4q31.3b"; transcript_id "ERV316A3_4q31.3b"; locus "ERV316A3_4q31.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0865"; model_cov "641"; model_pct "12.3"; chr4 rmsk exon 154473233 154473878 1394 + . gene_id "ERV316A3_4q31.3b"; transcript_id "ERV316A3_4q31.3b"; locus "ERV316A3_4q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0865"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "4580"; chr4 rmsk exon 154474301 154474652 541 + . gene_id "ERV316A3_4q31.3b"; transcript_id "ERV316A3_4q31.3b"; locus "ERV316A3_4q31.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0865"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HML5_4q32.1a ### chr4 rmsk gene 154836002 154840144 . - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0037"; model_cov "2755"; model_pct "40.3"; chr4 rmsk exon 154836002 154836480 2615 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 154836481 154836897 1495 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "4747"; repStart "-1734"; chr4 rmsk exon 154836868 154838460 11041 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "3471"; repStart "-1758"; chr4 rmsk exon 154838447 154838609 788 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "2498"; repFamily "ERVK"; repLeft "2337"; repStart "-4339"; chr4 rmsk exon 154839029 154839655 4135 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "754"; repFamily "ERVK"; repLeft "124"; repStart "-6083"; chr4 rmsk exon 154839662 154840144 2548 - . gene_id "HML5_4q32.1a"; transcript_id "HML5_4q32.1a"; locus "HML5_4q32.1a"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0037"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_4q32.1a ### chr4 rmsk gene 154918329 154924563 . - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0429"; model_cov "5412"; model_pct "70.2"; chr4 rmsk exon 154918329 154918731 2504 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 154918732 154919111 2209 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr4 rmsk exon 154919109 154919325 1242 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 154919327 154921038 7667 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr4 rmsk exon 154921029 154921178 928 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 154921158 154924152 18387 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 154924155 154924563 2910 - . gene_id "HERVH_4q32.1a"; transcript_id "HERVH_4q32.1a"; locus "HERVH_4q32.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0429"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_4q32.1a ### chr4 rmsk gene 154949756 154954350 . - . gene_id "MER41_4q32.1a"; transcript_id "MER41_4q32.1a"; locus "MER41_4q32.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0159"; model_cov "4742"; model_pct "79.8"; chr4 rmsk exon 154949756 154954111 6975 - . gene_id "MER41_4q32.1a"; transcript_id "MER41_4q32.1a"; locus "MER41_4q32.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0159"; repClass "LTR"; repEnd "4895"; repFamily "ERV1"; repLeft "406"; repStart "-1051"; chr4 rmsk exon 154954104 154954350 489 - . gene_id "MER41_4q32.1a"; transcript_id "MER41_4q32.1a"; locus "MER41_4q32.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0159"; repClass "LTR"; repEnd "-891"; repFamily "ERV1"; repLeft "-1144"; repStart "-6837"; ### ERV316A3_4q32.1a ### chr4 rmsk gene 155046945 155048453 . + . gene_id "ERV316A3_4q32.1a"; transcript_id "ERV316A3_4q32.1a"; locus "ERV316A3_4q32.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0866"; model_cov "1196"; model_pct "22.9"; chr4 rmsk exon 155046945 155048100 2183 + . gene_id "ERV316A3_4q32.1a"; transcript_id "ERV316A3_4q32.1a"; locus "ERV316A3_4q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0866"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4030"; chr4 rmsk exon 155048274 155048453 363 + . gene_id "ERV316A3_4q32.1a"; transcript_id "ERV316A3_4q32.1a"; locus "ERV316A3_4q32.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0866"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "202"; ### HERVH_4q32.1b ### chr4 rmsk gene 155108278 155114237 . - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0430"; model_cov "5263"; model_pct "68.2"; chr4 rmsk exon 155108278 155108728 3419 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 155108729 155109100 2294 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 155109099 155109315 1391 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 155109317 155109978 4328 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 155109981 155113784 20869 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr4 rmsk exon 155113787 155114237 3408 - . gene_id "HERVH_4q32.1b"; transcript_id "HERVH_4q32.1b"; locus "HERVH_4q32.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0430"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_4q32.1a ### chr4 rmsk gene 155114727 155119462 . - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0257"; model_cov "4979"; model_pct "75.5"; chr4 rmsk exon 155114727 155115155 2820 - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0257"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 155115174 155115359 15941 - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0257"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "6400"; repStart "-14"; chr4 rmsk exon 155115400 155116803 15941 - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0257"; repClass "LTR"; repEnd "6399"; repFamily "ERV1"; repLeft "5069"; repStart "-199"; chr4 rmsk exon 155117098 155118169 15941 - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0257"; repClass "LTR"; repEnd "5068"; repFamily "ERV1"; repLeft "3968"; repStart "-1530"; chr4 rmsk exon 155118477 155119462 15941 - . gene_id "MER4_4q32.1a"; transcript_id "MER4_4q32.1a"; locus "MER4_4q32.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0257"; repClass "LTR"; repEnd "3967"; repFamily "ERV1"; repLeft "1602"; repStart "-2631"; ### LTR57_4q32.1 ### chr4 rmsk gene 155119463 155120045 . - . gene_id "LTR57_4q32.1"; transcript_id "LTR57_4q32.1"; locus "LTR57_4q32.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0060"; model_cov "597"; model_pct "11.2"; chr4 rmsk exon 155119463 155120045 1822 - . gene_id "LTR57_4q32.1"; transcript_id "LTR57_4q32.1"; locus "LTR57_4q32.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0060"; repClass "LTR"; repEnd "1585"; repFamily "ERVL"; repLeft "988"; repStart "-3758"; ### MER4_4q32.1b ### chr4 rmsk gene 155120046 155123356 . - . gene_id "MER4_4q32.1b"; transcript_id "MER4_4q32.1b"; locus "MER4_4q32.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0258"; model_cov "2526"; model_pct "38.3"; chr4 rmsk exon 155120046 155120349 15941 - . gene_id "MER4_4q32.1b"; transcript_id "MER4_4q32.1b"; locus "MER4_4q32.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0258"; repClass "LTR"; repEnd "3967"; repFamily "ERV1"; repLeft "3233"; repStart "-2631"; chr4 rmsk exon 155120380 155120636 6193 - . gene_id "MER4_4q32.1b"; transcript_id "MER4_4q32.1b"; locus "MER4_4q32.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0258"; repClass "LTR"; repEnd "1817"; repFamily "ERV1"; repLeft "1582"; repStart "-4781"; chr4 rmsk exon 155121474 155122913 6193 - . gene_id "MER4_4q32.1b"; transcript_id "MER4_4q32.1b"; locus "MER4_4q32.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0258"; repClass "LTR"; repEnd "1581"; repFamily "ERV1"; repLeft "24"; repStart "-5017"; chr4 rmsk exon 155122931 155123356 2670 - . gene_id "MER4_4q32.1b"; transcript_id "MER4_4q32.1b"; locus "MER4_4q32.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0258"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_4q32.1a ### chr4 rmsk gene 155152384 155155266 . + . gene_id "MER101_4q32.1a"; transcript_id "MER101_4q32.1a"; locus "MER101_4q32.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0128"; model_cov "3293"; model_pct "49.6"; chr4 rmsk exon 155152384 155152704 2222 + . gene_id "MER101_4q32.1a"; transcript_id "MER101_4q32.1a"; locus "MER101_4q32.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0128"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "129"; chr4 rmsk exon 155152827 155153040 621 + . gene_id "MER101_4q32.1a"; transcript_id "MER101_4q32.1a"; locus "MER101_4q32.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0128"; repClass "LTR"; repEnd "2089"; repFamily "ERV1"; repLeft "-4550"; repStart "1883"; chr4 rmsk exon 155153086 155153697 1788 + . gene_id "MER101_4q32.1a"; transcript_id "MER101_4q32.1a"; locus "MER101_4q32.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0128"; repClass "LTR"; repEnd "2843"; repFamily "ERV1"; repLeft "-3796"; repStart "2202"; chr4 rmsk exon 155153701 155155266 2391 + . gene_id "MER101_4q32.1a"; transcript_id "MER101_4q32.1a"; locus "MER101_4q32.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0128"; repClass "LTR"; repEnd "3522"; repFamily "ERV1"; repLeft "-3117"; repStart "1076"; ### MER101_4q32.1b ### chr4 rmsk gene 155155343 155159605 . + . gene_id "MER101_4q32.1b"; transcript_id "MER101_4q32.1b"; locus "MER101_4q32.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0129"; model_cov "1728"; model_pct "26.0"; chr4 rmsk exon 155155343 155155371 4298 + . gene_id "MER101_4q32.1b"; transcript_id "MER101_4q32.1b"; locus "MER101_4q32.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0129"; repClass "LTR"; repEnd "2780"; repFamily "ERV1"; repLeft "-3859"; repStart "2753"; chr4 rmsk exon 155155460 155156053 4298 + . gene_id "MER101_4q32.1b"; transcript_id "MER101_4q32.1b"; locus "MER101_4q32.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0129"; repClass "LTR"; repEnd "3377"; repFamily "ERV1"; repLeft "-3262"; repStart "2781"; chr4 rmsk exon 155158530 155158924 4298 + . gene_id "MER101_4q32.1b"; transcript_id "MER101_4q32.1b"; locus "MER101_4q32.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0129"; repClass "LTR"; repEnd "3783"; repFamily "ERV1"; repLeft "-2856"; repStart "3378"; chr4 rmsk exon 155158912 155159605 1417 + . gene_id "MER101_4q32.1b"; transcript_id "MER101_4q32.1b"; locus "MER101_4q32.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0129"; repClass "LTR"; repEnd "5273"; repFamily "ERV1"; repLeft "-1366"; repStart "4573"; ### MER101_4q32.1c ### chr4 rmsk gene 155159743 155161543 . + . gene_id "MER101_4q32.1c"; transcript_id "MER101_4q32.1c"; locus "MER101_4q32.1c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0130"; model_cov "2466"; model_pct "37.1"; chr4 rmsk exon 155159743 155160271 2024 + . gene_id "MER101_4q32.1c"; transcript_id "MER101_4q32.1c"; locus "MER101_4q32.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0130"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "3603"; chr4 rmsk exon 155160254 155160482 758 + . gene_id "MER101_4q32.1c"; transcript_id "MER101_4q32.1c"; locus "MER101_4q32.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0130"; repClass "LTR"; repEnd "5910"; repFamily "ERV1"; repLeft "-729"; repStart "5675"; chr4 rmsk exon 155160451 155161083 2277 + . gene_id "MER101_4q32.1c"; transcript_id "MER101_4q32.1c"; locus "MER101_4q32.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0130"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-731"; repStart "4690"; chr4 rmsk exon 155161084 155161543 2653 + . gene_id "MER101_4q32.1c"; transcript_id "MER101_4q32.1c"; locus "MER101_4q32.1c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0130"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q32.1a ### chr4 rmsk gene 155181369 155183847 . + . gene_id "ERVLE_4q32.1a"; transcript_id "ERVLE_4q32.1a"; locus "ERVLE_4q32.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1178"; model_cov "1728"; model_pct "30.5"; chr4 rmsk exon 155181369 155181475 841 + . gene_id "ERVLE_4q32.1a"; transcript_id "ERVLE_4q32.1a"; locus "ERVLE_4q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1178"; repClass "LTR"; repEnd "1261"; repFamily "ERVL"; repLeft "-4406"; repStart "1156"; chr4 rmsk exon 155181811 155182123 841 + . gene_id "ERVLE_4q32.1a"; transcript_id "ERVLE_4q32.1a"; locus "ERVLE_4q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1178"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-4096"; repStart "1262"; chr4 rmsk exon 155182264 155182786 1910 + . gene_id "ERVLE_4q32.1a"; transcript_id "ERVLE_4q32.1a"; locus "ERVLE_4q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1178"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "-2337"; repStart "2796"; chr4 rmsk exon 155183093 155183847 1910 + . gene_id "ERVLE_4q32.1a"; transcript_id "ERVLE_4q32.1a"; locus "ERVLE_4q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1178"; repClass "LTR"; repEnd "4111"; repFamily "ERVL"; repLeft "-1556"; repStart "3331"; ### ERVLB4_4q32.1a ### chr4 rmsk gene 155273422 155276460 . + . gene_id "ERVLB4_4q32.1a"; transcript_id "ERVLB4_4q32.1a"; locus "ERVLB4_4q32.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0541"; model_cov "2858"; model_pct "50.0"; chr4 rmsk exon 155273422 155274045 4653 + . gene_id "ERVLB4_4q32.1a"; transcript_id "ERVLB4_4q32.1a"; locus "ERVLB4_4q32.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0541"; repClass "LTR"; repEnd "2469"; repFamily "ERVL"; repLeft "-3245"; repStart "1823"; chr4 rmsk exon 155274358 155276460 4653 + . gene_id "ERVLB4_4q32.1a"; transcript_id "ERVLB4_4q32.1a"; locus "ERVLB4_4q32.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0541"; repClass "LTR"; repEnd "4682"; repFamily "ERVL"; repLeft "-1032"; repStart "2470"; ### ERVLE_4q32.1b ### chr4 rmsk gene 155410928 155411819 . - . gene_id "ERVLE_4q32.1b"; transcript_id "ERVLE_4q32.1b"; locus "ERVLE_4q32.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1179"; model_cov "633"; model_pct "11.2"; chr4 rmsk exon 155410928 155411169 860 - . gene_id "ERVLE_4q32.1b"; transcript_id "ERVLE_4q32.1b"; locus "ERVLE_4q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1179"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "4746"; repStart "-656"; chr4 rmsk exon 155411455 155411819 943 - . gene_id "ERVLE_4q32.1b"; transcript_id "ERVLE_4q32.1b"; locus "ERVLE_4q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1179"; repClass "LTR"; repEnd "4358"; repFamily "ERVL"; repLeft "3990"; repStart "-1309"; ### ERVLE_4q32.1c ### chr4 rmsk gene 155414669 155419242 . - . gene_id "ERVLE_4q32.1c"; transcript_id "ERVLE_4q32.1c"; locus "ERVLE_4q32.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1180"; model_cov "2825"; model_pct "49.9"; chr4 rmsk exon 155414669 155414909 651 - . gene_id "ERVLE_4q32.1c"; transcript_id "ERVLE_4q32.1c"; locus "ERVLE_4q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1180"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "3320"; repStart "-2102"; chr4 rmsk exon 155414922 155417225 4424 - . gene_id "ERVLE_4q32.1c"; transcript_id "ERVLE_4q32.1c"; locus "ERVLE_4q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1180"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "849"; repStart "-2396"; chr4 rmsk exon 155418782 155418909 257 - . gene_id "ERVLE_4q32.1c"; transcript_id "ERVLE_4q32.1c"; locus "ERVLE_4q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1180"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "378"; repStart "-5163"; chr4 rmsk exon 155419207 155419242 257 - . gene_id "ERVLE_4q32.1c"; transcript_id "ERVLE_4q32.1c"; locus "ERVLE_4q32.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1180"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "345"; repStart "-5290"; ### HERVL40_4q32.1a ### chr4 rmsk gene 155737558 155741019 . + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0125"; model_cov "2118"; model_pct "38.3"; chr4 rmsk exon 155737558 155738006 1643 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 155738019 155738326 993 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "-5202"; repStart "17"; chr4 rmsk exon 155738791 155738996 857 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "613"; repFamily "ERVL"; repLeft "-4917"; repStart "402"; chr4 rmsk exon 155738999 155739089 321 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "657"; repFamily "ERVL"; repLeft "-4873"; repStart "564"; chr4 rmsk exon 155739544 155740476 2347 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-3920"; repStart "651"; chr4 rmsk exon 155740484 155741019 2050 + . gene_id "HERVL40_4q32.1a"; transcript_id "HERVL40_4q32.1a"; locus "HERVL40_4q32.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0125"; repClass "LTR"; repEnd "3073"; repFamily "ERVL"; repLeft "-2457"; repStart "2529"; ### ERVLB4_4q32.1b ### chr4 rmsk gene 155741208 155745176 . - . gene_id "ERVLB4_4q32.1b"; transcript_id "ERVLB4_4q32.1b"; locus "ERVLB4_4q32.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0542"; model_cov "3141"; model_pct "55.0"; chr4 rmsk exon 155741208 155744359 17865 - . gene_id "ERVLB4_4q32.1b"; transcript_id "ERVLB4_4q32.1b"; locus "ERVLB4_4q32.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0542"; repClass "LTR"; repEnd "3142"; repFamily "ERVL"; repLeft "1"; repStart "-2572"; chr4 rmsk exon 155744387 155744568 1653 - . gene_id "ERVLB4_4q32.1b"; transcript_id "ERVLB4_4q32.1b"; locus "ERVLB4_4q32.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0542"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "247"; repStart "-66"; chr4 rmsk exon 155744928 155745176 1653 - . gene_id "ERVLB4_4q32.1b"; transcript_id "ERVLB4_4q32.1b"; locus "ERVLB4_4q32.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0542"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "1"; repStart "-274"; ### PRIMA4_4q32.1 ### chr4 rmsk gene 155844110 155845073 . + . gene_id "PRIMA4_4q32.1"; transcript_id "PRIMA4_4q32.1"; locus "PRIMA4_4q32.1"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0069"; model_cov "1009"; model_pct "12.2"; chr4 rmsk exon 155844110 155845073 3609 + . gene_id "PRIMA4_4q32.1"; transcript_id "PRIMA4_4q32.1"; locus "PRIMA4_4q32.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0069"; repClass "LTR"; repEnd "1010"; repFamily "ERV1"; repLeft "-7260"; repStart "1"; ### MER4_4q32.1c ### chr4 rmsk gene 155845149 155850544 . + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0259"; model_cov "6135"; model_pct "93.0"; chr4 rmsk exon 155845149 155845204 350 + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0259"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "-5706"; repStart "836"; chr4 rmsk exon 155845181 155846431 15735 + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0259"; repClass "LTR"; repEnd "2750"; repFamily "ERV1"; repLeft "-3848"; repStart "503"; chr4 rmsk exon 155846659 155847439 15735 + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0259"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "-2441"; repStart "2751"; chr4 rmsk exon 155847750 155850113 15735 + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0259"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4158"; chr4 rmsk exon 155850175 155850544 2179 + . gene_id "MER4_4q32.1c"; transcript_id "MER4_4q32.1c"; locus "MER4_4q32.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0259"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "-40"; ### MER61_4q32.1a ### chr4 rmsk gene 155871948 155878290 . - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0140"; model_cov "7416"; model_pct "100.0"; chr4 rmsk exon 155871948 155872339 2566 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0140"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr4 rmsk exon 155872340 155872945 3890 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0140"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4579"; repStart "0"; chr4 rmsk exon 155873259 155876747 12155 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0140"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "-1012"; repStart "-289"; chr4 rmsk exon 155876749 155876983 3291 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0140"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "603"; repStart "-4377"; chr4 rmsk exon 155877288 155877915 3291 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0140"; repClass "LTR"; repEnd "602"; repFamily "ERV1"; repLeft "1"; repStart "-4615"; chr4 rmsk exon 155877927 155878290 2156 - . gene_id "MER61_4q32.1a"; transcript_id "MER61_4q32.1a"; locus "MER61_4q32.1a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0140"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "28"; repStart "-29"; ### HERVL_4q32.1a ### chr4 rmsk gene 155921533 155922738 . - . gene_id "HERVL_4q32.1a"; transcript_id "HERVL_4q32.1a"; locus "HERVL_4q32.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0437"; model_cov "676"; model_pct "12.0"; chr4 rmsk exon 155921533 155922054 2314 - . gene_id "HERVL_4q32.1a"; transcript_id "HERVL_4q32.1a"; locus "HERVL_4q32.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0437"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 155922056 155922738 4840 - . gene_id "HERVL_4q32.1a"; transcript_id "HERVL_4q32.1a"; locus "HERVL_4q32.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0437"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "4970"; repStart "-8"; ### HERVH_4q32.1c ### chr4 rmsk gene 156103922 156109304 . - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0431"; model_cov "4906"; model_pct "63.6"; chr4 rmsk exon 156103922 156104298 2363 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 156104299 156104514 1389 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 156104516 156105174 3133 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 156105177 156105680 3411 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr4 rmsk exon 156105671 156105816 827 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 156105811 156108894 15851 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 156108897 156109304 2786 - . gene_id "HERVH_4q32.1c"; transcript_id "HERVH_4q32.1c"; locus "HERVH_4q32.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0431"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_4q32.1b ### chr4 rmsk gene 156150542 156151142 . - . gene_id "MER61_4q32.1b"; transcript_id "MER61_4q32.1b"; locus "MER61_4q32.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0141"; model_cov "690"; model_pct "13.2"; chr4 rmsk exon 156150542 156150810 1213 - . gene_id "MER61_4q32.1b"; transcript_id "MER61_4q32.1b"; locus "MER61_4q32.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0141"; repClass "LTR"; repEnd "2525"; repFamily "ERV1"; repLeft "2210"; repStart "-2692"; chr4 rmsk exon 156150792 156151142 1591 - . gene_id "MER61_4q32.1b"; transcript_id "MER61_4q32.1b"; locus "MER61_4q32.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0141"; repClass "LTR"; repEnd "1973"; repFamily "ERV1"; repLeft "1598"; repStart "-3244"; ### ERV316A3_4q32.1b ### chr4 rmsk gene 156238104 156241420 . - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0867"; model_cov "1496"; model_pct "28.6"; chr4 rmsk exon 156238104 156238469 835 - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0867"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "82"; repStart "0"; chr4 rmsk exon 156238973 156239265 845 - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0867"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4936"; repStart "0"; chr4 rmsk exon 156239626 156239707 845 - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0867"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "4855"; repStart "-291"; chr4 rmsk exon 156240224 156240672 1251 - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0867"; repClass "LTR"; repEnd "4839"; repFamily "ERVL"; repLeft "4409"; repStart "-387"; chr4 rmsk exon 156240781 156241420 1574 - . gene_id "ERV316A3_4q32.1b"; transcript_id "ERV316A3_4q32.1b"; locus "ERV316A3_4q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0867"; repClass "LTR"; repEnd "1148"; repFamily "ERVL"; repLeft "452"; repStart "-4078"; ### ERVLE_4q32.1d ### chr4 rmsk gene 156407191 156408016 . + . gene_id "ERVLE_4q32.1d"; transcript_id "ERVLE_4q32.1d"; locus "ERVLE_4q32.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1181"; model_cov "859"; model_pct "15.2"; chr4 rmsk exon 156407191 156407811 2284 + . gene_id "ERVLE_4q32.1d"; transcript_id "ERVLE_4q32.1d"; locus "ERVLE_4q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1181"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "-2327"; repStart "2695"; chr4 rmsk exon 156407809 156408016 1003 + . gene_id "ERVLE_4q32.1d"; transcript_id "ERVLE_4q32.1d"; locus "ERVLE_4q32.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1181"; repClass "LTR"; repEnd "4452"; repFamily "ERVL"; repLeft "-1215"; repStart "4238"; ### HERVL_4q32.1b ### chr4 rmsk gene 156488654 156492314 . + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0438"; model_cov "2782"; model_pct "49.2"; chr4 rmsk exon 156488654 156489034 2771 + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0438"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr4 rmsk exon 156489106 156489141 2771 + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0438"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "406"; chr4 rmsk exon 156489142 156491681 20073 + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0438"; repClass "LTR"; repEnd "2558"; repFamily "ERVL"; repLeft "-3096"; repStart "1"; chr4 rmsk exon 156491665 156491894 1615 + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0438"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5429"; chr4 rmsk exon 156491897 156492314 2826 + . gene_id "HERVL_4q32.1b"; transcript_id "HERVL_4q32.1b"; locus "HERVL_4q32.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0438"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HERVH_4q32.1d ### chr4 rmsk gene 156600196 156606034 . + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0432"; model_cov "4919"; model_pct "63.8"; chr4 rmsk exon 156600196 156600646 3297 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 156600649 156603699 20394 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 156603679 156603828 974 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 156603819 156604323 3347 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 156604326 156604987 4388 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 156604985 156605206 1361 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr4 rmsk exon 156605205 156605583 2496 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 156605584 156606034 3476 + . gene_id "HERVH_4q32.1d"; transcript_id "HERVH_4q32.1d"; locus "HERVH_4q32.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0432"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q32.1c ### chr4 rmsk gene 156707315 156712304 . - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0868"; model_cov "3378"; model_pct "64.6"; chr4 rmsk exon 156707315 156707677 803 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "4936"; repFamily "ERVL"; repLeft "4570"; repStart "-290"; chr4 rmsk exon 156707884 156707931 1601 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "4277"; repStart "-903"; chr4 rmsk exon 156708349 156709328 1601 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "3912"; repFamily "ERVL"; repLeft "3006"; repStart "-1314"; chr4 rmsk exon 156709586 156709711 808 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "2917"; repStart "-2190"; chr4 rmsk exon 156709767 156711420 3704 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "2937"; repFamily "ERVL"; repLeft "1256"; repStart "-2289"; chr4 rmsk exon 156712062 156712304 306 - . gene_id "ERV316A3_4q32.1c"; transcript_id "ERV316A3_4q32.1c"; locus "ERV316A3_4q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0868"; repClass "LTR"; repEnd "1260"; repFamily "ERVL"; repLeft "1000"; repStart "-3966"; ### ERV316A3_4q32.1d ### chr4 rmsk gene 156990675 156992065 . + . gene_id "ERV316A3_4q32.1d"; transcript_id "ERV316A3_4q32.1d"; locus "ERV316A3_4q32.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0869"; model_cov "884"; model_pct "16.9"; chr4 rmsk exon 156990675 156991011 711 + . gene_id "ERV316A3_4q32.1d"; transcript_id "ERV316A3_4q32.1d"; locus "ERV316A3_4q32.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0869"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-953"; repStart "3776"; chr4 rmsk exon 156991124 156991503 730 + . gene_id "ERV316A3_4q32.1d"; transcript_id "ERV316A3_4q32.1d"; locus "ERV316A3_4q32.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0869"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4679"; chr4 rmsk exon 156991739 156992065 1011 + . gene_id "ERV316A3_4q32.1d"; transcript_id "ERV316A3_4q32.1d"; locus "ERV316A3_4q32.1d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0869"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "147"; ### ERV316A3_4q32.1e ### chr4 rmsk gene 157008663 157010178 . + . gene_id "ERV316A3_4q32.1e"; transcript_id "ERV316A3_4q32.1e"; locus "ERV316A3_4q32.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0870"; model_cov "934"; model_pct "17.9"; chr4 rmsk exon 157008663 157009033 1757 + . gene_id "ERV316A3_4q32.1e"; transcript_id "ERV316A3_4q32.1e"; locus "ERV316A3_4q32.1e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0870"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "97"; chr4 rmsk exon 157009282 157010178 2953 + . gene_id "ERV316A3_4q32.1e"; transcript_id "ERV316A3_4q32.1e"; locus "ERV316A3_4q32.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0870"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "-751"; repStart "3541"; ### ERV316A3_4q32.1f ### chr4 rmsk gene 157047995 157050959 . + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0871"; model_cov "1532"; model_pct "29.3"; chr4 rmsk exon 157047995 157048426 1494 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr4 rmsk exon 157048499 157048643 2347 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "2397"; repFamily "ERVL"; repLeft "-2829"; repStart "2247"; chr4 rmsk exon 157048932 157049439 2347 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "2923"; repFamily "ERVL"; repLeft "-2303"; repStart "2398"; chr4 rmsk exon 157049642 157049884 493 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "-2136"; repStart "2848"; chr4 rmsk exon 157049932 157050420 1784 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "4038"; repFamily "ERVL"; repLeft "-1188"; repStart "3540"; chr4 rmsk exon 157050841 157050959 1784 + . gene_id "ERV316A3_4q32.1f"; transcript_id "ERV316A3_4q32.1f"; locus "ERV316A3_4q32.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0871"; repClass "LTR"; repEnd "4156"; repFamily "ERVL"; repLeft "-1070"; repStart "4039"; ### ERVLE_4q32.1e ### chr4 rmsk gene 157208320 157211329 . + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1184"; model_cov "2190"; model_pct "38.6"; chr4 rmsk exon 157208320 157208661 408 + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1184"; repClass "LTR"; repEnd "834"; repFamily "ERVL"; repLeft "-4833"; repStart "473"; chr4 rmsk exon 157208704 157208948 454 + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1184"; repClass "LTR"; repEnd "2955"; repFamily "ERVL"; repLeft "-2712"; repStart "2655"; chr4 rmsk exon 157209661 157210305 1031 + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1184"; repClass "LTR"; repEnd "3690"; repFamily "ERVL"; repLeft "-1977"; repStart "3039"; chr4 rmsk exon 157210438 157210756 750 + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1184"; repClass "LTR"; repEnd "4178"; repFamily "ERVL"; repLeft "-1489"; repStart "3855"; chr4 rmsk exon 157210785 157211329 1175 + . gene_id "ERVLE_4q32.1e"; transcript_id "ERVLE_4q32.1e"; locus "ERVLE_4q32.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1184"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "-874"; repStart "4238"; ### HERVL_4q32.1c ### chr4 rmsk gene 157404175 157408193 . - . gene_id "HERVL_4q32.1c"; transcript_id "HERVL_4q32.1c"; locus "HERVL_4q32.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0439"; model_cov "3506"; model_pct "62.0"; chr4 rmsk exon 157404175 157404723 2022 - . gene_id "HERVL_4q32.1c"; transcript_id "HERVL_4q32.1c"; locus "HERVL_4q32.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0439"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr4 rmsk exon 157404724 157408193 25570 - . gene_id "HERVL_4q32.1c"; transcript_id "HERVL_4q32.1c"; locus "HERVL_4q32.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0439"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2148"; repStart "0"; ### MER41_4q32.1b ### chr4 rmsk gene 157469320 157475164 . + . gene_id "MER41_4q32.1b"; transcript_id "MER41_4q32.1b"; locus "MER41_4q32.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0160"; model_cov "5588"; model_pct "94.0"; chr4 rmsk exon 157469320 157469927 2672 + . gene_id "MER41_4q32.1b"; transcript_id "MER41_4q32.1b"; locus "MER41_4q32.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0160"; repClass "LTR"; repEnd "-300"; repFamily "ERV1"; repLeft "-6246"; repStart "-919"; chr4 rmsk exon 157470763 157475164 14019 + . gene_id "MER41_4q32.1b"; transcript_id "MER41_4q32.1b"; locus "MER41_4q32.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0160"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "976"; ### MER61_4q32.1c ### chr4 rmsk gene 157469932 157470669 . + . gene_id "MER61_4q32.1c"; transcript_id "MER61_4q32.1c"; locus "MER61_4q32.1c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0142"; model_cov "715"; model_pct "13.7"; chr4 rmsk exon 157469932 157470669 3062 + . gene_id "MER61_4q32.1c"; transcript_id "MER61_4q32.1c"; locus "MER61_4q32.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0142"; repClass "LTR"; repEnd "4782"; repFamily "ERV1"; repLeft "-435"; repStart "4067"; ### MER61_4q32.1d ### chr4 rmsk gene 157523588 157525146 . - . gene_id "MER61_4q32.1d"; transcript_id "MER61_4q32.1d"; locus "MER61_4q32.1d"; category "internal"; intModel "MER61-int"; locid "MER61-int_0143"; model_cov "1316"; model_pct "25.2"; chr4 rmsk exon 157523588 157525146 8267 - . gene_id "MER61_4q32.1d"; transcript_id "MER61_4q32.1d"; locus "MER61_4q32.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0143"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "2675"; repStart "-1226"; ### LTR25_4q32.1 ### chr4 rmsk gene 157525426 157527869 . - . gene_id "LTR25_4q32.1"; transcript_id "LTR25_4q32.1"; locus "LTR25_4q32.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0038"; model_cov "2744"; model_pct "38.2"; chr4 rmsk exon 157525426 157527869 4637 - . gene_id "LTR25_4q32.1"; transcript_id "LTR25_4q32.1"; locus "LTR25_4q32.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0038"; repClass "LTR"; repEnd "6889"; repFamily "ERV1"; repLeft "4145"; repStart "-299"; ### MER61_4q32.1e ### chr4 rmsk gene 157527874 157528532 . - . gene_id "MER61_4q32.1e"; transcript_id "MER61_4q32.1e"; locus "MER61_4q32.1e"; category "internal"; intModel "MER61-int"; locid "MER61-int_0144"; model_cov "713"; model_pct "13.7"; chr4 rmsk exon 157527874 157527926 1439 - . gene_id "MER61_4q32.1e"; transcript_id "MER61_4q32.1e"; locus "MER61_4q32.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0144"; repClass "LTR"; repEnd "-1029"; repFamily "ERV1"; repLeft "-1089"; repStart "-6246"; chr4 rmsk exon 157527959 157528311 1439 - . gene_id "MER61_4q32.1e"; transcript_id "MER61_4q32.1e"; locus "MER61_4q32.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0144"; repClass "LTR"; repEnd "-1090"; repFamily "ERV1"; repLeft "-1487"; repStart "-6307"; chr4 rmsk exon 157528279 157528532 451 - . gene_id "MER61_4q32.1e"; transcript_id "MER61_4q32.1e"; locus "MER61_4q32.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0144"; repClass "LTR"; repEnd "-1616"; repFamily "ERV1"; repLeft "-1872"; repStart "-6833"; ### HERVL74_4q32.1 ### chr4 rmsk gene 157557134 157560521 . + . gene_id "HERVL74_4q32.1"; transcript_id "HERVL74_4q32.1"; locus "HERVL74_4q32.1"; category "prototype"; intModel "HERVL74-int"; locid "HERVL74-int_0026"; model_cov "1114"; model_pct "19.6"; chr4 rmsk exon 157557134 157557575 1727 + . gene_id "HERVL74_4q32.1"; transcript_id "HERVL74_4q32.1"; locus "HERVL74_4q32.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0026"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "0"; repStart "13"; chr4 rmsk exon 157557586 157558510 1990 + . gene_id "HERVL74_4q32.1"; transcript_id "HERVL74_4q32.1"; locus "HERVL74_4q32.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0026"; repClass "LTR"; repEnd "950"; repFamily "ERVL"; repLeft "-4735"; repStart "11"; chr4 rmsk exon 157559634 157559808 687 + . gene_id "HERVL74_4q32.1"; transcript_id "HERVL74_4q32.1"; locus "HERVL74_4q32.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0026"; repClass "LTR"; repEnd "5650"; repFamily "ERVL"; repLeft "-35"; repStart "5475"; chr4 rmsk exon 157560136 157560521 1015 + . gene_id "HERVL74_4q32.1"; transcript_id "HERVL74_4q32.1"; locus "HERVL74_4q32.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0026"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "0"; repStart "10"; ### HERVL_4q32.1d ### chr4 rmsk gene 157730287 157734156 . - . gene_id "HERVL_4q32.1d"; transcript_id "HERVL_4q32.1d"; locus "HERVL_4q32.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0440"; model_cov "3566"; model_pct "63.1"; chr4 rmsk exon 157730287 157730408 610 - . gene_id "HERVL_4q32.1d"; transcript_id "HERVL_4q32.1d"; locus "HERVL_4q32.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0440"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "289"; repStart "-35"; chr4 rmsk exon 157730393 157730555 1200 - . gene_id "HERVL_4q32.1d"; transcript_id "HERVL_4q32.1d"; locus "HERVL_4q32.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0440"; repClass "LTR"; repEnd "163"; repFamily "ERVL"; repLeft "1"; repStart "-281"; chr4 rmsk exon 157730556 157734156 27125 - . gene_id "HERVL_4q32.1d"; transcript_id "HERVL_4q32.1d"; locus "HERVL_4q32.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0440"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2088"; repStart "0"; ### ERVLE_4q32.1f ### chr4 rmsk gene 157746734 157748847 . - . gene_id "ERVLE_4q32.1f"; transcript_id "ERVLE_4q32.1f"; locus "ERVLE_4q32.1f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1186"; model_cov "1533"; model_pct "27.1"; chr4 rmsk exon 157746734 157747315 789 - . gene_id "ERVLE_4q32.1f"; transcript_id "ERVLE_4q32.1f"; locus "ERVLE_4q32.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1186"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "1"; repStart "-92"; chr4 rmsk exon 157747370 157747533 682 - . gene_id "ERVLE_4q32.1f"; transcript_id "ERVLE_4q32.1f"; locus "ERVLE_4q32.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1186"; repClass "LTR"; repEnd "5599"; repFamily "ERVL"; repLeft "5426"; repStart "-68"; chr4 rmsk exon 157747686 157748847 2015 - . gene_id "ERVLE_4q32.1f"; transcript_id "ERVLE_4q32.1f"; locus "ERVLE_4q32.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1186"; repClass "LTR"; repEnd "5329"; repFamily "ERVL"; repLeft "3969"; repStart "-338"; ### ERVLE_4q32.1g ### chr4 rmsk gene 157752235 157752878 . + . gene_id "ERVLE_4q32.1g"; transcript_id "ERVLE_4q32.1g"; locus "ERVLE_4q32.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1188"; model_cov "648"; model_pct "11.4"; chr4 rmsk exon 157752235 157752436 497 + . gene_id "ERVLE_4q32.1g"; transcript_id "ERVLE_4q32.1g"; locus "ERVLE_4q32.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1188"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "-2338"; repStart "3120"; chr4 rmsk exon 157752446 157752747 650 + . gene_id "ERVLE_4q32.1g"; transcript_id "ERVLE_4q32.1g"; locus "ERVLE_4q32.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1188"; repClass "LTR"; repEnd "4102"; repFamily "ERVL"; repLeft "-1565"; repStart "3789"; chr4 rmsk exon 157752760 157752878 393 + . gene_id "ERVLE_4q32.1g"; transcript_id "ERVLE_4q32.1g"; locus "ERVLE_4q32.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1188"; repClass "LTR"; repEnd "4338"; repFamily "ERVL"; repLeft "-1329"; repStart "4212"; ### ERV316A3_4q32.1g ### chr4 rmsk gene 157944968 157945603 . + . gene_id "ERV316A3_4q32.1g"; transcript_id "ERV316A3_4q32.1g"; locus "ERV316A3_4q32.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0872"; model_cov "548"; model_pct "10.5"; chr4 rmsk exon 157944968 157945020 300 + . gene_id "ERV316A3_4q32.1g"; transcript_id "ERV316A3_4q32.1g"; locus "ERV316A3_4q32.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0872"; repClass "LTR"; repEnd "2972"; repFamily "ERVL"; repLeft "-2254"; repStart "2920"; chr4 rmsk exon 157945019 157945485 1223 + . gene_id "ERV316A3_4q32.1g"; transcript_id "ERV316A3_4q32.1g"; locus "ERV316A3_4q32.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0872"; repClass "LTR"; repEnd "3950"; repFamily "ERVL"; repLeft "-1276"; repStart "3454"; chr4 rmsk exon 157945486 157945603 494 + . gene_id "ERV316A3_4q32.1g"; transcript_id "ERV316A3_4q32.1g"; locus "ERV316A3_4q32.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0872"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-12"; repStart "303"; ### HARLEQUIN_4q32.1 ### chr4 rmsk gene 158224447 158229241 . - . gene_id "HARLEQUIN_4q32.1"; transcript_id "HARLEQUIN_4q32.1"; locus "HARLEQUIN_4q32.1"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0066"; model_cov "4249"; model_pct "61.6"; chr4 rmsk exon 158224447 158226197 14179 - . gene_id "HARLEQUIN_4q32.1"; transcript_id "HARLEQUIN_4q32.1"; locus "HARLEQUIN_4q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0066"; repClass "LTR"; repEnd "5096"; repFamily "ERV1"; repLeft "3344"; repStart "-1800"; chr4 rmsk exon 158226187 158228751 10323 - . gene_id "HARLEQUIN_4q32.1"; transcript_id "HARLEQUIN_4q32.1"; locus "HARLEQUIN_4q32.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0066"; repClass "LTR"; repEnd "2498"; repFamily "ERV1"; repLeft "1"; repStart "-4398"; chr4 rmsk exon 158228752 158229241 2477 - . gene_id "HARLEQUIN_4q32.1"; transcript_id "HARLEQUIN_4q32.1"; locus "HARLEQUIN_4q32.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0066"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-19"; repStart "0"; ### HML5_4q32.1b ### chr4 rmsk gene 158292783 158299055 . + . gene_id "HML5_4q32.1b"; transcript_id "HML5_4q32.1b"; locus "HML5_4q32.1b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0038"; model_cov "5303"; model_pct "77.6"; chr4 rmsk exon 158292783 158293270 2795 + . gene_id "HML5_4q32.1b"; transcript_id "HML5_4q32.1b"; locus "HML5_4q32.1b"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0038"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 158293271 158294046 5367 + . gene_id "HML5_4q32.1b"; transcript_id "HML5_4q32.1b"; locus "HML5_4q32.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0038"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "-6043"; repStart "1"; chr4 rmsk exon 158294030 158298524 34553 + . gene_id "HML5_4q32.1b"; transcript_id "HML5_4q32.1b"; locus "HML5_4q32.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0038"; repClass "LTR"; repEnd "6824"; repFamily "ERVK"; repLeft "-13"; repStart "2314"; chr4 rmsk exon 158298568 158299055 2765 + . gene_id "HML5_4q32.1b"; transcript_id "HML5_4q32.1b"; locus "HML5_4q32.1b"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0038"; repClass "LTR"; repEnd "498"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### ERVLB4_4q32.1c ### chr4 rmsk gene 159406407 159408120 . + . gene_id "ERVLB4_4q32.1c"; transcript_id "ERVLB4_4q32.1c"; locus "ERVLB4_4q32.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0545"; model_cov "1257"; model_pct "22.0"; chr4 rmsk exon 159406407 159407632 7695 + . gene_id "ERVLB4_4q32.1c"; transcript_id "ERVLB4_4q32.1c"; locus "ERVLB4_4q32.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0545"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "-4"; repStart "4453"; chr4 rmsk exon 159407636 159408049 1915 + . gene_id "ERVLB4_4q32.1c"; transcript_id "ERVLB4_4q32.1c"; locus "ERVLB4_4q32.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0545"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "-47"; repStart "37"; chr4 rmsk exon 159408083 159408120 1228 + . gene_id "ERVLB4_4q32.1c"; transcript_id "ERVLB4_4q32.1c"; locus "ERVLB4_4q32.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0545"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "-9"; repStart "510"; ### ERV316A3_4q32.1h ### chr4 rmsk gene 159509270 159511357 . + . gene_id "ERV316A3_4q32.1h"; transcript_id "ERV316A3_4q32.1h"; locus "ERV316A3_4q32.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0874"; model_cov "1609"; model_pct "30.8"; chr4 rmsk exon 159509270 159509514 790 + . gene_id "ERV316A3_4q32.1h"; transcript_id "ERV316A3_4q32.1h"; locus "ERV316A3_4q32.1h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0874"; repClass "LTR"; repEnd "255"; repFamily "ERVL"; repLeft "-183"; repStart "1"; chr4 rmsk exon 159509611 159509972 382 + . gene_id "ERV316A3_4q32.1h"; transcript_id "ERV316A3_4q32.1h"; locus "ERV316A3_4q32.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0874"; repClass "LTR"; repEnd "3263"; repFamily "ERVL"; repLeft "-1963"; repStart "2740"; chr4 rmsk exon 159509987 159510381 2163 + . gene_id "ERV316A3_4q32.1h"; transcript_id "ERV316A3_4q32.1h"; locus "ERV316A3_4q32.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0874"; repClass "LTR"; repEnd "4058"; repFamily "ERVL"; repLeft "-1168"; repStart "3619"; chr4 rmsk exon 159510722 159511357 2163 + . gene_id "ERV316A3_4q32.1h"; transcript_id "ERV316A3_4q32.1h"; locus "ERV316A3_4q32.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0874"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "-520"; repStart "4059"; ### ERVLE_4q32.1h ### chr4 rmsk gene 159546737 159548796 . - . gene_id "ERVLE_4q32.1h"; transcript_id "ERVLE_4q32.1h"; locus "ERVLE_4q32.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1190"; model_cov "1590"; model_pct "28.1"; chr4 rmsk exon 159546737 159546847 313 - . gene_id "ERVLE_4q32.1h"; transcript_id "ERVLE_4q32.1h"; locus "ERVLE_4q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1190"; repClass "LTR"; repEnd "3939"; repFamily "ERVL"; repLeft "3761"; repStart "-1728"; chr4 rmsk exon 159547057 159547816 1194 - . gene_id "ERVLE_4q32.1h"; transcript_id "ERVLE_4q32.1h"; locus "ERVLE_4q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1190"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "1517"; repStart "-3389"; chr4 rmsk exon 159548105 159548464 654 - . gene_id "ERVLE_4q32.1h"; transcript_id "ERVLE_4q32.1h"; locus "ERVLE_4q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1190"; repClass "LTR"; repEnd "1841"; repFamily "ERVL"; repLeft "1465"; repStart "-3826"; chr4 rmsk exon 159548538 159548796 293 - . gene_id "ERVLE_4q32.1h"; transcript_id "ERVLE_4q32.1h"; locus "ERVLE_4q32.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1190"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "851"; repStart "-4541"; ### ERVL_4q32.1 ### chr4 rmsk gene 159558396 159561961 . - . gene_id "ERVL_4q32.1"; transcript_id "ERVL_4q32.1"; locus "ERVL_4q32.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0120"; model_cov "1877"; model_pct "32.6"; chr4 rmsk exon 159558396 159559832 10466 - . gene_id "ERVL_4q32.1"; transcript_id "ERVL_4q32.1"; locus "ERVL_4q32.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0120"; repClass "LTR"; repEnd "5332"; repFamily "ERVL"; repLeft "3919"; repStart "-425"; chr4 rmsk exon 159560560 159561024 10466 - . gene_id "ERVL_4q32.1"; transcript_id "ERVL_4q32.1"; locus "ERVL_4q32.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0120"; repClass "LTR"; repEnd "3918"; repFamily "ERVL"; repLeft "3454"; repStart "-1839"; chr4 rmsk exon 159561132 159561221 2220 - . gene_id "ERVL_4q32.1"; transcript_id "ERVL_4q32.1"; locus "ERVL_4q32.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0120"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "432"; repStart "-38"; chr4 rmsk exon 159561586 159561961 2220 - . gene_id "ERVL_4q32.1"; transcript_id "ERVL_4q32.1"; locus "ERVL_4q32.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0120"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "48"; repStart "-123"; ### MER34B_4q32.1a ### chr4 rmsk gene 159590210 159591360 . - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0093"; model_cov "657"; model_pct "12.3"; chr4 rmsk exon 159590210 159590302 392 - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0093"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "446"; repStart "0"; chr4 rmsk exon 159590453 159590508 269 - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0093"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "373"; repStart "-114"; chr4 rmsk exon 159590521 159590881 1221 - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0093"; repClass "LTR"; repEnd "1577"; repFamily "ERV1"; repLeft "1221"; repStart "-3779"; chr4 rmsk exon 159591017 159591206 497 - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0093"; repClass "LTR"; repEnd "-235"; repFamily "ERV1"; repLeft "-425"; repStart "-5591"; chr4 rmsk exon 159591262 159591360 320 - . gene_id "MER34B_4q32.1a"; transcript_id "MER34B_4q32.1a"; locus "MER34B_4q32.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0093"; repClass "LTR"; repEnd "-514"; repFamily "ERV1"; repLeft "-625"; repStart "-5870"; ### MER34B_4q32.1b ### chr4 rmsk gene 159591506 159592204 . - . gene_id "MER34B_4q32.1b"; transcript_id "MER34B_4q32.1b"; locus "MER34B_4q32.1b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0094"; model_cov "613"; model_pct "11.4"; chr4 rmsk exon 159591506 159592204 1513 - . gene_id "MER34B_4q32.1b"; transcript_id "MER34B_4q32.1b"; locus "MER34B_4q32.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0094"; repClass "LTR"; repEnd "656"; repFamily "ERV1"; repLeft "43"; repStart "-4700"; ### HUERSP2_4q32.1 ### chr4 rmsk gene 159672911 159673774 . + . gene_id "HUERSP2_4q32.1"; transcript_id "HUERSP2_4q32.1"; locus "HUERSP2_4q32.1"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0048"; model_cov "865"; model_pct "28.0"; chr4 rmsk exon 159672911 159673774 3720 + . gene_id "HUERSP2_4q32.1"; transcript_id "HUERSP2_4q32.1"; locus "HUERSP2_4q32.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0048"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "-1"; repStart "2222"; ### HERVL40_4q32.1b ### chr4 rmsk gene 159984343 159987027 . + . gene_id "HERVL40_4q32.1b"; transcript_id "HERVL40_4q32.1b"; locus "HERVL40_4q32.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0127"; model_cov "2088"; model_pct "37.8"; chr4 rmsk exon 159984343 159984702 975 + . gene_id "HERVL40_4q32.1b"; transcript_id "HERVL40_4q32.1b"; locus "HERVL40_4q32.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0127"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "-3919"; repStart "1252"; chr4 rmsk exon 159984702 159985964 4452 + . gene_id "HERVL40_4q32.1b"; transcript_id "HERVL40_4q32.1b"; locus "HERVL40_4q32.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0127"; repClass "LTR"; repEnd "3840"; repFamily "ERVL"; repLeft "-1690"; repStart "2522"; chr4 rmsk exon 159986076 159986474 1469 + . gene_id "HERVL40_4q32.1b"; transcript_id "HERVL40_4q32.1b"; locus "HERVL40_4q32.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0127"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-1097"; repStart "4022"; chr4 rmsk exon 159986774 159987027 861 + . gene_id "HERVL40_4q32.1b"; transcript_id "HERVL40_4q32.1b"; locus "HERVL40_4q32.1b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0127"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "196"; ### HERVL_4q32.1e ### chr4 rmsk gene 160112602 160119438 . + . gene_id "HERVL_4q32.1e"; transcript_id "HERVL_4q32.1e"; locus "HERVL_4q32.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0442"; model_cov "5544"; model_pct "98.1"; chr4 rmsk exon 160112602 160113029 2963 + . gene_id "HERVL_4q32.1e"; transcript_id "HERVL_4q32.1e"; locus "HERVL_4q32.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0442"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-101"; chr4 rmsk exon 160113394 160119014 39920 + . gene_id "HERVL_4q32.1e"; transcript_id "HERVL_4q32.1e"; locus "HERVL_4q32.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0442"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "110"; chr4 rmsk exon 160119015 160119438 2982 + . gene_id "HERVL_4q32.1e"; transcript_id "HERVL_4q32.1e"; locus "HERVL_4q32.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0442"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_4q32.1f ### chr4 rmsk gene 160270612 160276262 . + . gene_id "HERVL_4q32.1f"; transcript_id "HERVL_4q32.1f"; locus "HERVL_4q32.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0443"; model_cov "5233"; model_pct "92.6"; chr4 rmsk exon 160270612 160271048 3132 + . gene_id "HERVL_4q32.1f"; transcript_id "HERVL_4q32.1f"; locus "HERVL_4q32.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0443"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr4 rmsk exon 160271051 160276262 39451 + . gene_id "HERVL_4q32.1f"; transcript_id "HERVL_4q32.1f"; locus "HERVL_4q32.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0443"; repClass "LTR"; repEnd "5234"; repFamily "ERVL"; repLeft "-420"; repStart "1"; ### ERV316A3_4q32.1i ### chr4 rmsk gene 160295729 160297504 . - . gene_id "ERV316A3_4q32.1i"; transcript_id "ERV316A3_4q32.1i"; locus "ERV316A3_4q32.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0876"; model_cov "1280"; model_pct "24.5"; chr4 rmsk exon 160295729 160296335 754 - . gene_id "ERV316A3_4q32.1i"; transcript_id "ERV316A3_4q32.1i"; locus "ERV316A3_4q32.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0876"; repClass "LTR"; repEnd "1666"; repFamily "ERVL"; repLeft "1065"; repStart "-3560"; chr4 rmsk exon 160296352 160296730 282 - . gene_id "ERV316A3_4q32.1i"; transcript_id "ERV316A3_4q32.1i"; locus "ERV316A3_4q32.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0876"; repClass "LTR"; repEnd "1353"; repFamily "ERVL"; repLeft "961"; repStart "-3873"; chr4 rmsk exon 160296817 160297084 266 - . gene_id "ERV316A3_4q32.1i"; transcript_id "ERV316A3_4q32.1i"; locus "ERV316A3_4q32.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0876"; repClass "LTR"; repEnd "829"; repFamily "ERVL"; repLeft "542"; repStart "-4397"; chr4 rmsk exon 160297374 160297504 289 - . gene_id "ERV316A3_4q32.1i"; transcript_id "ERV316A3_4q32.1i"; locus "ERV316A3_4q32.1i"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0876"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "346"; repStart "-9"; ### ERVLB4_4q32.1d ### chr4 rmsk gene 160315126 160320164 . - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0546"; model_cov "4469"; model_pct "78.2"; chr4 rmsk exon 160315126 160315210 484 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "-76"; repFamily "ERVL"; repLeft "-160"; repStart "-632"; chr4 rmsk exon 160315216 160315509 1375 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "5696"; repFamily "ERVL"; repLeft "5390"; repStart "-18"; chr4 rmsk exon 160315521 160317854 12940 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "2113"; repStart "-1276"; chr4 rmsk exon 160317854 160318080 1314 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "1960"; repFamily "ERVL"; repLeft "1729"; repStart "-3754"; chr4 rmsk exon 160318482 160319969 5305 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "123"; repStart "-3984"; chr4 rmsk exon 160319997 160320164 737 - . gene_id "ERVLB4_4q32.1d"; transcript_id "ERVLB4_4q32.1d"; locus "ERVLB4_4q32.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0546"; repClass "LTR"; repEnd "164"; repFamily "ERVL"; repLeft "3"; repStart "-392"; ### ERVLE_4q32.1i ### chr4 rmsk gene 160373464 160374108 . + . gene_id "ERVLE_4q32.1i"; transcript_id "ERVLE_4q32.1i"; locus "ERVLE_4q32.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1191"; model_cov "688"; model_pct "12.1"; chr4 rmsk exon 160373464 160374108 1549 + . gene_id "ERVLE_4q32.1i"; transcript_id "ERVLE_4q32.1i"; locus "ERVLE_4q32.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1191"; repClass "LTR"; repEnd "1668"; repFamily "ERVL"; repLeft "-3999"; repStart "980"; ### HERVL40_4q32.1c ### chr4 rmsk gene 160405896 160407306 . - . gene_id "HERVL40_4q32.1c"; transcript_id "HERVL40_4q32.1c"; locus "HERVL40_4q32.1c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0128"; model_cov "865"; model_pct "15.6"; chr4 rmsk exon 160405896 160406342 1027 - . gene_id "HERVL40_4q32.1c"; transcript_id "HERVL40_4q32.1c"; locus "HERVL40_4q32.1c"; repName "LTR40A1"; geneRegion "ltr"; locid "HERVL40-int_0128"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "23"; repStart "-91"; chr4 rmsk exon 160406357 160406625 661 - . gene_id "HERVL40_4q32.1c"; transcript_id "HERVL40_4q32.1c"; locus "HERVL40_4q32.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0128"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "5246"; repStart "-3"; chr4 rmsk exon 160406648 160406804 274 - . gene_id "HERVL40_4q32.1c"; transcript_id "HERVL40_4q32.1c"; locus "HERVL40_4q32.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0128"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "5026"; repStart "-349"; chr4 rmsk exon 160406900 160407306 1052 - . gene_id "HERVL40_4q32.1c"; transcript_id "HERVL40_4q32.1c"; locus "HERVL40_4q32.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0128"; repClass "LTR"; repEnd "3099"; repFamily "ERVL"; repLeft "2670"; repStart "-2431"; ### ERVLE_4q32.1j ### chr4 rmsk gene 160442390 160448612 . + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1192"; model_cov "3735"; model_pct "65.9"; chr4 rmsk exon 160442390 160443001 794 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 160443067 160444241 2958 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "1746"; repFamily "ERVL"; repLeft "-3921"; repStart "507"; chr4 rmsk exon 160444542 160445401 2177 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "2814"; repFamily "ERVL"; repLeft "-2853"; repStart "1889"; chr4 rmsk exon 160445398 160446077 1619 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "4289"; repFamily "ERVL"; repLeft "-1378"; repStart "3579"; chr4 rmsk exon 160446115 160446263 532 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-1126"; repStart "4393"; chr4 rmsk exon 160447909 160448612 1600 + . gene_id "ERVLE_4q32.1j"; transcript_id "ERVLE_4q32.1j"; locus "ERVLE_4q32.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1192"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "4952"; ### MER41_4q32.1c ### chr4 rmsk gene 160487182 160493868 . + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; category "unknown"; intModel "MER41-int"; locid "MER41-int_0161"; model_cov "5252"; model_pct "88.3"; chr4 rmsk exon 160487182 160487802 4343 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0161"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 160487803 160488091 1847 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "297"; repFamily "ERV1"; repLeft "-5649"; repStart "1"; chr4 rmsk exon 160488097 160488211 501 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0161"; repClass "LTR"; repEnd "-26"; repFamily "ERV1"; repLeft "-660"; repStart "-150"; chr4 rmsk exon 160488326 160488594 1065 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0161"; repClass "LTR"; repEnd "234"; repFamily "ERV1"; repLeft "-400"; repStart "-25"; chr4 rmsk exon 160488595 160489717 3366 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "1607"; repFamily "ERV1"; repLeft "-4339"; repStart "357"; chr4 rmsk exon 160489706 160490604 3148 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "2783"; repFamily "ERV1"; repLeft "-3163"; repStart "1529"; chr4 rmsk exon 160490592 160490987 3251 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "3717"; repFamily "ERV1"; repLeft "-2229"; repStart "3300"; chr4 rmsk exon 160491277 160491519 3251 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "3958"; repFamily "ERV1"; repLeft "-1988"; repStart "3718"; chr4 rmsk exon 160491509 160493238 10586 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0161"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "4148"; chr4 rmsk exon 160493241 160493868 4274 + . gene_id "MER41_4q32.1c"; transcript_id "MER41_4q32.1c"; locus "MER41_4q32.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0161"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_4q32.1j ### chr4 rmsk gene 160498362 160501675 . + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0877"; model_cov "2290"; model_pct "43.8"; chr4 rmsk exon 160498362 160498836 899 + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0877"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-7"; repStart "3"; chr4 rmsk exon 160498961 160499096 1425 + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0877"; repClass "LTR"; repEnd "219"; repFamily "ERVL"; repLeft "-5007"; repStart "96"; chr4 rmsk exon 160499410 160499955 1425 + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0877"; repClass "LTR"; repEnd "786"; repFamily "ERVL"; repLeft "-4440"; repStart "220"; chr4 rmsk exon 160500054 160500501 1070 + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0877"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "-3577"; repStart "1198"; chr4 rmsk exon 160500506 160501675 2616 + . gene_id "ERV316A3_4q32.1j"; transcript_id "ERV316A3_4q32.1j"; locus "ERV316A3_4q32.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0877"; repClass "LTR"; repEnd "3078"; repFamily "ERVL"; repLeft "-2148"; repStart "1928"; ### ERVLE_4q32.1k ### chr4 rmsk gene 160513148 160514766 . - . gene_id "ERVLE_4q32.1k"; transcript_id "ERVLE_4q32.1k"; locus "ERVLE_4q32.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1193"; model_cov "824"; model_pct "14.5"; chr4 rmsk exon 160513148 160513328 353 - . gene_id "ERVLE_4q32.1k"; transcript_id "ERVLE_4q32.1k"; locus "ERVLE_4q32.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1193"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "2590"; repStart "-2891"; chr4 rmsk exon 160513433 160513644 470 - . gene_id "ERVLE_4q32.1k"; transcript_id "ERVLE_4q32.1k"; locus "ERVLE_4q32.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1193"; repClass "LTR"; repEnd "2472"; repFamily "ERVL"; repLeft "2262"; repStart "-3195"; chr4 rmsk exon 160514007 160514257 470 - . gene_id "ERVLE_4q32.1k"; transcript_id "ERVLE_4q32.1k"; locus "ERVLE_4q32.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1193"; repClass "LTR"; repEnd "2261"; repFamily "ERVL"; repLeft "1990"; repStart "-3406"; chr4 rmsk exon 160514610 160514766 637 - . gene_id "ERVLE_4q32.1k"; transcript_id "ERVLE_4q32.1k"; locus "ERVLE_4q32.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1193"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "1436"; repStart "-4074"; ### HML2_4q32.1 ### chr4 rmsk gene 160658786 160660924 . + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0038"; model_cov "1186"; model_pct "15.7"; chr4 rmsk exon 160658786 160659753 8801 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 160659754 160660025 2390 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "272"; repFamily "ERVK"; repLeft "-7264"; repStart "1"; chr4 rmsk exon 160660008 160660924 8165 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "1338"; repFamily "ERVK"; repLeft "-6198"; repStart "423"; ### ERVLE_4q32.1l ### chr4 rmsk gene 160671598 160672932 . - . gene_id "ERVLE_4q32.1l"; transcript_id "ERVLE_4q32.1l"; locus "ERVLE_4q32.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1194"; model_cov "880"; model_pct "15.5"; chr4 rmsk exon 160671598 160672249 2246 - . gene_id "ERVLE_4q32.1l"; transcript_id "ERVLE_4q32.1l"; locus "ERVLE_4q32.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1194"; repClass "LTR"; repEnd "861"; repFamily "ERVL"; repLeft "196"; repStart "-4806"; chr4 rmsk exon 160672399 160672537 799 - . gene_id "ERVLE_4q32.1l"; transcript_id "ERVLE_4q32.1l"; locus "ERVLE_4q32.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1194"; repClass "LTR"; repEnd "171"; repFamily "ERVL"; repLeft "41"; repStart "-5496"; chr4 rmsk exon 160672841 160672932 799 - . gene_id "ERVLE_4q32.1l"; transcript_id "ERVLE_4q32.1l"; locus "ERVLE_4q32.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1194"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "-45"; repStart "-5627"; ### ERV316A3_4q32.1k ### chr4 rmsk gene 160754500 160757673 . - . gene_id "ERV316A3_4q32.1k"; transcript_id "ERV316A3_4q32.1k"; locus "ERV316A3_4q32.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0880"; model_cov "2436"; model_pct "46.6"; chr4 rmsk exon 160754500 160756914 3828 - . gene_id "ERV316A3_4q32.1k"; transcript_id "ERV316A3_4q32.1k"; locus "ERV316A3_4q32.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0880"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "246"; repStart "-2544"; chr4 rmsk exon 160757390 160757673 969 - . gene_id "ERV316A3_4q32.1k"; transcript_id "ERV316A3_4q32.1k"; locus "ERV316A3_4q32.1k"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0880"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "170"; repStart "-1"; ### ERV316A3_4q32.1l ### chr4 rmsk gene 160794307 160799795 . + . gene_id "ERV316A3_4q32.1l"; transcript_id "ERV316A3_4q32.1l"; locus "ERV316A3_4q32.1l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0882"; model_cov "3909"; model_pct "74.8"; chr4 rmsk exon 160794307 160796429 2598 + . gene_id "ERV316A3_4q32.1l"; transcript_id "ERV316A3_4q32.1l"; locus "ERV316A3_4q32.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0882"; repClass "LTR"; repEnd "2774"; repFamily "ERVL"; repLeft "-2452"; repStart "634"; chr4 rmsk exon 160796465 160797809 2219 + . gene_id "ERV316A3_4q32.1l"; transcript_id "ERV316A3_4q32.1l"; locus "ERV316A3_4q32.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0882"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "-520"; repStart "3359"; chr4 rmsk exon 160798913 160799140 911 + . gene_id "ERV316A3_4q32.1l"; transcript_id "ERV316A3_4q32.1l"; locus "ERV316A3_4q32.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0882"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "-239"; repStart "4751"; chr4 rmsk exon 160799611 160799795 911 + . gene_id "ERV316A3_4q32.1l"; transcript_id "ERV316A3_4q32.1l"; locus "ERV316A3_4q32.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0882"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-52"; repStart "4988"; ### ERVLE_4q32.2a ### chr4 rmsk gene 160844188 160845622 . - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1195"; model_cov "1025"; model_pct "18.1"; chr4 rmsk exon 160844188 160844271 430 - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1195"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5584"; repStart "0"; chr4 rmsk exon 160844328 160844814 1811 - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1195"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "3882"; repStart "-1235"; chr4 rmsk exon 160844866 160844904 1811 - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1195"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "3841"; repStart "-1786"; chr4 rmsk exon 160845209 160845219 1811 - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1195"; repClass "LTR"; repEnd "3840"; repFamily "ERVL"; repLeft "3831"; repStart "-1827"; chr4 rmsk exon 160845267 160845622 1811 - . gene_id "ERVLE_4q32.2a"; transcript_id "ERVLE_4q32.2a"; locus "ERVLE_4q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1195"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "3487"; repStart "-1837"; ### ERVLE_4q32.2b ### chr4 rmsk gene 160964696 160965536 . + . gene_id "ERVLE_4q32.2b"; transcript_id "ERVLE_4q32.2b"; locus "ERVLE_4q32.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1196"; model_cov "709"; model_pct "12.5"; chr4 rmsk exon 160964696 160965059 604 + . gene_id "ERVLE_4q32.2b"; transcript_id "ERVLE_4q32.2b"; locus "ERVLE_4q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1196"; repClass "LTR"; repEnd "1456"; repFamily "ERVL"; repLeft "-4211"; repStart "1069"; chr4 rmsk exon 160965215 160965536 457 + . gene_id "ERVLE_4q32.2b"; transcript_id "ERVLE_4q32.2b"; locus "ERVLE_4q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1196"; repClass "LTR"; repEnd "1999"; repFamily "ERVL"; repLeft "-3668"; repStart "1677"; ### ERVLE_4q32.2c ### chr4 rmsk gene 160976582 160978137 . + . gene_id "ERVLE_4q32.2c"; transcript_id "ERVLE_4q32.2c"; locus "ERVLE_4q32.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1197"; model_cov "1234"; model_pct "21.8"; chr4 rmsk exon 160976582 160976913 435 + . gene_id "ERVLE_4q32.2c"; transcript_id "ERVLE_4q32.2c"; locus "ERVLE_4q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1197"; repClass "LTR"; repEnd "2432"; repFamily "ERVL"; repLeft "-3235"; repStart "2084"; chr4 rmsk exon 160976926 160977663 1665 + . gene_id "ERVLE_4q32.2c"; transcript_id "ERVLE_4q32.2c"; locus "ERVLE_4q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1197"; repClass "LTR"; repEnd "3217"; repFamily "ERVL"; repLeft "-2450"; repStart "2466"; chr4 rmsk exon 160978004 160978137 1665 + . gene_id "ERVLE_4q32.2c"; transcript_id "ERVLE_4q32.2c"; locus "ERVLE_4q32.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1197"; repClass "LTR"; repEnd "3353"; repFamily "ERVL"; repLeft "-2314"; repStart "3218"; ### ERVLE_4q32.2d ### chr4 rmsk gene 160987535 160989466 . + . gene_id "ERVLE_4q32.2d"; transcript_id "ERVLE_4q32.2d"; locus "ERVLE_4q32.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1199"; model_cov "1257"; model_pct "22.2"; chr4 rmsk exon 160987535 160988006 508 + . gene_id "ERVLE_4q32.2d"; transcript_id "ERVLE_4q32.2d"; locus "ERVLE_4q32.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1199"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "-931"; repStart "4269"; chr4 rmsk exon 160988687 160989466 809 + . gene_id "ERVLE_4q32.2d"; transcript_id "ERVLE_4q32.2d"; locus "ERVLE_4q32.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1199"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "-410"; repStart "4467"; ### ERVLE_4q32.2e ### chr4 rmsk gene 161124264 161126524 . - . gene_id "ERVLE_4q32.2e"; transcript_id "ERVLE_4q32.2e"; locus "ERVLE_4q32.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1200"; model_cov "652"; model_pct "11.5"; chr4 rmsk exon 161124264 161124384 278 - . gene_id "ERVLE_4q32.2e"; transcript_id "ERVLE_4q32.2e"; locus "ERVLE_4q32.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1200"; repClass "LTR"; repEnd "2275"; repFamily "ERVL"; repLeft "2154"; repStart "-3392"; chr4 rmsk exon 161124697 161124907 434 - . gene_id "ERVLE_4q32.2e"; transcript_id "ERVLE_4q32.2e"; locus "ERVLE_4q32.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1200"; repClass "LTR"; repEnd "1441"; repFamily "ERVL"; repLeft "1230"; repStart "-4226"; chr4 rmsk exon 161126213 161126524 273 - . gene_id "ERVLE_4q32.2e"; transcript_id "ERVLE_4q32.2e"; locus "ERVLE_4q32.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1200"; repClass "LTR"; repEnd "1207"; repFamily "ERVL"; repLeft "887"; repStart "-4460"; ### HUERSP3_4q32.2a ### chr4 rmsk gene 161251767 161257841 . - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0051"; model_cov "4580"; model_pct "51.4"; chr4 rmsk exon 161251767 161252338 2490 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 161252339 161252601 1111 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8696"; repStart "-1"; chr4 rmsk exon 161253114 161253227 413 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "8453"; repFamily "ERV1"; repLeft "8346"; repStart "-466"; chr4 rmsk exon 161253237 161253936 3415 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr4 rmsk exon 161253922 161254524 3743 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "4970"; repStart "-3342"; chr4 rmsk exon 161254580 161254721 812 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4539"; repStart "-4239"; chr4 rmsk exon 161254729 161256947 7388 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "3258"; repFamily "ERV1"; repLeft "764"; repStart "-5661"; chr4 rmsk exon 161256926 161257188 833 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "2159"; repFamily "ERV1"; repLeft "1900"; repStart "-6760"; chr4 rmsk exon 161257270 161257841 2552 - . gene_id "HUERSP3_4q32.2a"; transcript_id "HUERSP3_4q32.2a"; locus "HUERSP3_4q32.2a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0051"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4q32.2f ### chr4 rmsk gene 161329444 161330082 . + . gene_id "ERVLE_4q32.2f"; transcript_id "ERVLE_4q32.2f"; locus "ERVLE_4q32.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1201"; model_cov "769"; model_pct "13.6"; chr4 rmsk exon 161329444 161330082 484 + . gene_id "ERVLE_4q32.2f"; transcript_id "ERVLE_4q32.2f"; locus "ERVLE_4q32.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1201"; repClass "LTR"; repEnd "4526"; repFamily "ERVL"; repLeft "-1141"; repStart "3757"; ### ERVLB4_4q32.2 ### chr4 rmsk gene 161419738 161422043 . + . gene_id "ERVLB4_4q32.2"; transcript_id "ERVLB4_4q32.2"; locus "ERVLB4_4q32.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0549"; model_cov "979"; model_pct "17.1"; chr4 rmsk exon 161419738 161420591 4577 + . gene_id "ERVLB4_4q32.2"; transcript_id "ERVLB4_4q32.2"; locus "ERVLB4_4q32.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0549"; repClass "LTR"; repEnd "5540"; repFamily "ERVL"; repLeft "-174"; repStart "4727"; chr4 rmsk exon 161421397 161421552 779 + . gene_id "ERVLB4_4q32.2"; transcript_id "ERVLB4_4q32.2"; locus "ERVLB4_4q32.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0549"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5547"; chr4 rmsk exon 161421554 161422043 2346 + . gene_id "ERVLB4_4q32.2"; transcript_id "ERVLB4_4q32.2"; locus "ERVLB4_4q32.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0549"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "-35"; repStart "-34"; ### ERVLE_4q32.2g ### chr4 rmsk gene 162077669 162078759 . + . gene_id "ERVLE_4q32.2g"; transcript_id "ERVLE_4q32.2g"; locus "ERVLE_4q32.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1203"; model_cov "1145"; model_pct "20.2"; chr4 rmsk exon 162077669 162078027 307 + . gene_id "ERVLE_4q32.2g"; transcript_id "ERVLE_4q32.2g"; locus "ERVLE_4q32.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1203"; repClass "LTR"; repEnd "1332"; repFamily "ERVL"; repLeft "-4335"; repStart "948"; chr4 rmsk exon 162078027 162078759 1315 + . gene_id "ERVLE_4q32.2g"; transcript_id "ERVLE_4q32.2g"; locus "ERVLE_4q32.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1203"; repClass "LTR"; repEnd "4919"; repFamily "ERVL"; repLeft "-748"; repStart "4158"; ### ERV316A3_4q32.2a ### chr4 rmsk gene 162229726 162231261 . + . gene_id "ERV316A3_4q32.2a"; transcript_id "ERV316A3_4q32.2a"; locus "ERV316A3_4q32.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0884"; model_cov "931"; model_pct "17.8"; chr4 rmsk exon 162229726 162230060 738 + . gene_id "ERV316A3_4q32.2a"; transcript_id "ERV316A3_4q32.2a"; locus "ERV316A3_4q32.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0884"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "-86"; repStart "1"; chr4 rmsk exon 162230377 162231261 973 + . gene_id "ERV316A3_4q32.2a"; transcript_id "ERV316A3_4q32.2a"; locus "ERV316A3_4q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0884"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4076"; repStart "219"; ### ERV316A3_4q32.2b ### chr4 rmsk gene 162233833 162234765 . + . gene_id "ERV316A3_4q32.2b"; transcript_id "ERV316A3_4q32.2b"; locus "ERV316A3_4q32.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0885"; model_cov "918"; model_pct "17.6"; chr4 rmsk exon 162233833 162234765 1097 + . gene_id "ERV316A3_4q32.2b"; transcript_id "ERV316A3_4q32.2b"; locus "ERV316A3_4q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0885"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "-353"; repStart "3955"; ### ERVLE_4q32.2h ### chr4 rmsk gene 162269737 162272381 . - . gene_id "ERVLE_4q32.2h"; transcript_id "ERVLE_4q32.2h"; locus "ERVLE_4q32.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1205"; model_cov "2209"; model_pct "39.0"; chr4 rmsk exon 162269737 162269845 295 - . gene_id "ERVLE_4q32.2h"; transcript_id "ERVLE_4q32.2h"; locus "ERVLE_4q32.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1205"; repClass "LTR"; repEnd "4625"; repFamily "ERVL"; repLeft "4512"; repStart "-1042"; chr4 rmsk exon 162270305 162270591 494 - . gene_id "ERVLE_4q32.2h"; transcript_id "ERVLE_4q32.2h"; locus "ERVLE_4q32.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1205"; repClass "LTR"; repEnd "3548"; repFamily "ERVL"; repLeft "3249"; repStart "-2119"; chr4 rmsk exon 162270629 162272381 1190 - . gene_id "ERVLE_4q32.2h"; transcript_id "ERVLE_4q32.2h"; locus "ERVLE_4q32.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1205"; repClass "LTR"; repEnd "2159"; repFamily "ERVL"; repLeft "362"; repStart "-3508"; ### ERVLE_4q32.2i ### chr4 rmsk gene 162353129 162354919 . + . gene_id "ERVLE_4q32.2i"; transcript_id "ERVLE_4q32.2i"; locus "ERVLE_4q32.2i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1207"; model_cov "1632"; model_pct "28.8"; chr4 rmsk exon 162353129 162354072 2906 + . gene_id "ERVLE_4q32.2i"; transcript_id "ERVLE_4q32.2i"; locus "ERVLE_4q32.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1207"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "-2768"; repStart "1922"; chr4 rmsk exon 162354286 162354919 2222 + . gene_id "ERVLE_4q32.2i"; transcript_id "ERVLE_4q32.2i"; locus "ERVLE_4q32.2i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1207"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "-2201"; repStart "2811"; ### ERVLE_4q32.2j ### chr4 rmsk gene 162366070 162367326 . - . gene_id "ERVLE_4q32.2j"; transcript_id "ERVLE_4q32.2j"; locus "ERVLE_4q32.2j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1208"; model_cov "627"; model_pct "11.1"; chr4 rmsk exon 162366070 162366252 363 - . gene_id "ERVLE_4q32.2j"; transcript_id "ERVLE_4q32.2j"; locus "ERVLE_4q32.2j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1208"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4662"; repStart "-831"; chr4 rmsk exon 162366791 162366977 363 - . gene_id "ERVLE_4q32.2j"; transcript_id "ERVLE_4q32.2j"; locus "ERVLE_4q32.2j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1208"; repClass "LTR"; repEnd "4661"; repFamily "ERVL"; repLeft "4486"; repStart "-1006"; chr4 rmsk exon 162367053 162367326 389 - . gene_id "ERVLE_4q32.2j"; transcript_id "ERVLE_4q32.2j"; locus "ERVLE_4q32.2j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1208"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "3653"; repStart "-1736"; ### LTR46_4q32.2 ### chr4 rmsk gene 162536081 162538856 . - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0003"; model_cov "1740"; model_pct "24.9"; chr4 rmsk exon 162536081 162536225 983 - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0003"; repClass "LTR"; repEnd "3889"; repFamily "ERV1"; repLeft "3745"; repStart "-3096"; chr4 rmsk exon 162536333 162536817 5723 - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0003"; repClass "LTR"; repEnd "1677"; repFamily "ERV1"; repLeft "1188"; repStart "-5308"; chr4 rmsk exon 162537103 162537686 5723 - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0003"; repClass "LTR"; repEnd "1187"; repFamily "ERV1"; repLeft "658"; repStart "-5798"; chr4 rmsk exon 162537809 162538390 3651 - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0003"; repClass "LTR"; repEnd "579"; repFamily "ERV1"; repLeft "1"; repStart "-6406"; chr4 rmsk exon 162538391 162538856 2598 - . gene_id "LTR46_4q32.2"; transcript_id "LTR46_4q32.2"; locus "LTR46_4q32.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0003"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_4q32.2 ### chr4 rmsk gene 162557088 162563129 . - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0040"; model_cov "4552"; model_pct "90.8"; chr4 rmsk exon 162557088 162557750 5034 - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0040"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 162557751 162560776 19753 - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0040"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "1863"; repStart "0"; chr4 rmsk exon 162560987 162561541 3221 - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0040"; repClass "LTR"; repEnd "1653"; repFamily "ERV1"; repLeft "1151"; repStart "-3362"; chr4 rmsk exon 162561534 162562467 5807 - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0040"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "1"; repStart "-4116"; chr4 rmsk exon 162562468 162563129 4883 - . gene_id "PABLA_4q32.2"; transcript_id "PABLA_4q32.2"; locus "PABLA_4q32.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0040"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_4q32.2 ### chr4 rmsk gene 162605101 162606615 . + . gene_id "MER4B_4q32.2"; transcript_id "MER4B_4q32.2"; locus "MER4B_4q32.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0145"; model_cov "905"; model_pct "13.4"; chr4 rmsk exon 162605101 162605184 277 + . gene_id "MER4B_4q32.2"; transcript_id "MER4B_4q32.2"; locus "MER4B_4q32.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0145"; repClass "LTR"; repEnd "5297"; repFamily "ERV1"; repLeft "-1461"; repStart "5218"; chr4 rmsk exon 162605238 162606090 3472 + . gene_id "MER4B_4q32.2"; transcript_id "MER4B_4q32.2"; locus "MER4B_4q32.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0145"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "5932"; chr4 rmsk exon 162606091 162606615 2646 + . gene_id "MER4B_4q32.2"; transcript_id "MER4B_4q32.2"; locus "MER4B_4q32.2"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0145"; repClass "LTR"; repEnd "534"; repFamily "ERV1"; repLeft "-369"; repStart "1"; ### HERVH_4q32.2a ### chr4 rmsk gene 162709182 162714747 . + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0433"; model_cov "4908"; model_pct "63.6"; chr4 rmsk exon 162709182 162709583 2546 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 162709586 162712501 19528 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 162712496 162712643 811 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 162712634 162713136 3354 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 162713139 162713801 4338 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 162713803 162714019 1372 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 162714018 162714396 2283 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 162714397 162714747 2014 + . gene_id "HERVH_4q32.2a"; transcript_id "HERVH_4q32.2a"; locus "HERVH_4q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0433"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_4q32.2 ### chr4 rmsk gene 162754368 162758079 . + . gene_id "HERVL_4q32.2"; transcript_id "HERVL_4q32.2"; locus "HERVL_4q32.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0444"; model_cov "3300"; model_pct "58.4"; chr4 rmsk exon 162754368 162756987 24468 + . gene_id "HERVL_4q32.2"; transcript_id "HERVL_4q32.2"; locus "HERVL_4q32.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0444"; repClass "LTR"; repEnd "5025"; repFamily "ERVL"; repLeft "-629"; repStart "2353"; chr4 rmsk exon 162757024 162757638 24468 + . gene_id "HERVL_4q32.2"; transcript_id "HERVL_4q32.2"; locus "HERVL_4q32.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0444"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5026"; chr4 rmsk exon 162757639 162758079 2896 + . gene_id "HERVL_4q32.2"; transcript_id "HERVL_4q32.2"; locus "HERVL_4q32.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0444"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4q32.2k ### chr4 rmsk gene 162783361 162785204 . - . gene_id "ERVLE_4q32.2k"; transcript_id "ERVLE_4q32.2k"; locus "ERVLE_4q32.2k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1209"; model_cov "1593"; model_pct "28.1"; chr4 rmsk exon 162783361 162784362 1824 - . gene_id "ERVLE_4q32.2k"; transcript_id "ERVLE_4q32.2k"; locus "ERVLE_4q32.2k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1209"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2089"; repStart "-2583"; chr4 rmsk exon 162784428 162784806 359 - . gene_id "ERVLE_4q32.2k"; transcript_id "ERVLE_4q32.2k"; locus "ERVLE_4q32.2k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1209"; repClass "LTR"; repEnd "1206"; repFamily "ERVL"; repLeft "815"; repStart "-4461"; chr4 rmsk exon 162785003 162785204 294 - . gene_id "ERVLE_4q32.2k"; transcript_id "ERVLE_4q32.2k"; locus "ERVLE_4q32.2k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1209"; repClass "LTR"; repEnd "562"; repFamily "ERVL"; repLeft "355"; repStart "-5105"; ### ERVLE_4q32.2l ### chr4 rmsk gene 162876180 162877005 . - . gene_id "ERVLE_4q32.2l"; transcript_id "ERVLE_4q32.2l"; locus "ERVLE_4q32.2l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1210"; model_cov "644"; model_pct "11.4"; chr4 rmsk exon 162876180 162876399 673 - . gene_id "ERVLE_4q32.2l"; transcript_id "ERVLE_4q32.2l"; locus "ERVLE_4q32.2l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1210"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "4296"; repStart "-1152"; chr4 rmsk exon 162876577 162876834 673 - . gene_id "ERVLE_4q32.2l"; transcript_id "ERVLE_4q32.2l"; locus "ERVLE_4q32.2l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1210"; repClass "LTR"; repEnd "4295"; repFamily "ERVL"; repLeft "4024"; repStart "-1372"; chr4 rmsk exon 162876860 162877005 365 - . gene_id "ERVLE_4q32.2l"; transcript_id "ERVLE_4q32.2l"; locus "ERVLE_4q32.2l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1210"; repClass "LTR"; repEnd "4277"; repFamily "ERVL"; repLeft "4123"; repStart "-1390"; ### ERV316A3_4q32.2c ### chr4 rmsk gene 162954811 162957883 . + . gene_id "ERV316A3_4q32.2c"; transcript_id "ERV316A3_4q32.2c"; locus "ERV316A3_4q32.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0887"; model_cov "2336"; model_pct "44.7"; chr4 rmsk exon 162954811 162956447 3351 + . gene_id "ERV316A3_4q32.2c"; transcript_id "ERV316A3_4q32.2c"; locus "ERV316A3_4q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0887"; repClass "LTR"; repEnd "3598"; repFamily "ERVL"; repLeft "-1628"; repStart "1955"; chr4 rmsk exon 162956908 162957553 1300 + . gene_id "ERV316A3_4q32.2c"; transcript_id "ERV316A3_4q32.2c"; locus "ERV316A3_4q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0887"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-793"; repStart "3740"; chr4 rmsk exon 162957557 162957883 454 + . gene_id "ERV316A3_4q32.2c"; transcript_id "ERV316A3_4q32.2c"; locus "ERV316A3_4q32.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0887"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "-104"; repStart "1"; ### ERV316A3_4q32.2d ### chr4 rmsk gene 163047106 163049250 . - . gene_id "ERV316A3_4q32.2d"; transcript_id "ERV316A3_4q32.2d"; locus "ERV316A3_4q32.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0888"; model_cov "1350"; model_pct "25.8"; chr4 rmsk exon 163047106 163047576 727 - . gene_id "ERV316A3_4q32.2d"; transcript_id "ERV316A3_4q32.2d"; locus "ERV316A3_4q32.2d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0888"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "6"; repStart "0"; chr4 rmsk exon 163047586 163048049 1502 - . gene_id "ERV316A3_4q32.2d"; transcript_id "ERV316A3_4q32.2d"; locus "ERV316A3_4q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0888"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "4734"; repStart "-4"; chr4 rmsk exon 163048091 163048736 1218 - . gene_id "ERV316A3_4q32.2d"; transcript_id "ERV316A3_4q32.2d"; locus "ERV316A3_4q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0888"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "3989"; repStart "-592"; chr4 rmsk exon 163049035 163049250 803 - . gene_id "ERV316A3_4q32.2d"; transcript_id "ERV316A3_4q32.2d"; locus "ERV316A3_4q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0888"; repClass "LTR"; repEnd "3985"; repFamily "ERVL"; repLeft "3768"; repStart "-1241"; ### ERVLE_4q32.2m ### chr4 rmsk gene 163065020 163074336 . + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1211"; model_cov "1807"; model_pct "31.9"; chr4 rmsk exon 163065020 163065453 760 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "214"; chr4 rmsk exon 163065765 163066102 625 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "-5318"; repStart "8"; chr4 rmsk exon 163068402 163068869 1495 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "823"; repFamily "ERVL"; repLeft "-4844"; repStart "345"; chr4 rmsk exon 163069746 163069853 327 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "940"; repFamily "ERVL"; repLeft "-4727"; repStart "832"; chr4 rmsk exon 163071495 163071628 346 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "1111"; repFamily "ERVL"; repLeft "-4556"; repStart "976"; chr4 rmsk exon 163073619 163074336 2321 + . gene_id "ERVLE_4q32.2m"; transcript_id "ERVLE_4q32.2m"; locus "ERVLE_4q32.2m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1211"; repClass "LTR"; repEnd "1893"; repFamily "ERVL"; repLeft "-3774"; repStart "1148"; ### HERVH_4q32.2b ### chr4 rmsk gene 163093170 163097909 . + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0434"; model_cov "4029"; model_pct "52.2"; chr4 rmsk exon 163093170 163093602 3304 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 163093605 163096486 14810 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 163096466 163096613 815 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 163096613 163097041 2613 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "-3783"; repStart "3500"; chr4 rmsk exon 163097046 163097108 395 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5753"; chr4 rmsk exon 163097109 163097481 2308 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 163097482 163097909 3343 + . gene_id "HERVH_4q32.2b"; transcript_id "HERVH_4q32.2b"; locus "HERVH_4q32.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0434"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_4q32.2c ### chr4 rmsk gene 163099937 163104322 . - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0435"; model_cov "3448"; model_pct "44.7"; chr4 rmsk exon 163099937 163100371 2486 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 163100372 163100940 3357 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr4 rmsk exon 163100934 163101352 2363 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr4 rmsk exon 163101344 163102528 7657 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3962"; repStart "-2564"; chr4 rmsk exon 163102522 163103118 3487 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3140"; repStart "-3977"; chr4 rmsk exon 163103098 163103747 3578 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2371"; repStart "-4718"; chr4 rmsk exon 163103731 163103790 389 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "60"; repFamily "ERV1"; repLeft "1"; repStart "-7653"; chr4 rmsk exon 163103791 163103875 644 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "367"; repStart "0"; chr4 rmsk exon 163103887 163104322 2391 - . gene_id "HERVH_4q32.2c"; transcript_id "HERVH_4q32.2c"; locus "HERVH_4q32.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0435"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3_4q32.2b ### chr4 rmsk gene 163172346 163180085 . + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0052"; model_cov "6373"; model_pct "71.5"; chr4 rmsk exon 163172346 163172956 2014 + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0052"; repClass "LTR"; repEnd "621"; repFamily "ERV1"; repLeft "-8298"; repStart "15"; chr4 rmsk exon 163172959 163174784 9418 + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0052"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "-6246"; repStart "843"; chr4 rmsk exon 163174781 163176120 8327 + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0052"; repClass "LTR"; repEnd "4428"; repFamily "ERV1"; repLeft "-4491"; repStart "3061"; chr4 rmsk exon 163176120 163178415 13518 + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0052"; repClass "LTR"; repEnd "6923"; repFamily "ERV1"; repLeft "-1996"; repStart "4571"; chr4 rmsk exon 163179821 163180085 1011 + . gene_id "HUERSP3_4q32.2b"; transcript_id "HUERSP3_4q32.2b"; locus "HUERSP3_4q32.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0052"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; ### HUERSP3_4q32.2c ### chr4 rmsk gene 163188107 163195098 . - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0053"; model_cov "5489"; model_pct "61.5"; chr4 rmsk exon 163188107 163188364 1007 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr4 rmsk exon 163188894 163188971 326 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "6962"; repFamily "ERV1"; repLeft "6874"; repStart "-1957"; chr4 rmsk exon 163188965 163189087 10843 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "6935"; repFamily "ERV1"; repLeft "6815"; repStart "-1984"; chr4 rmsk exon 163190271 163192174 10843 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "6814"; repFamily "ERV1"; repLeft "4901"; repStart "-2105"; chr4 rmsk exon 163192176 163192319 949 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chr4 rmsk exon 163192313 163194415 7692 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "891"; repStart "-5635"; chr4 rmsk exon 163194476 163195098 2132 - . gene_id "HUERSP3_4q32.2c"; transcript_id "HUERSP3_4q32.2c"; locus "HUERSP3_4q32.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0053"; repClass "LTR"; repEnd "617"; repFamily "ERV1"; repLeft "3"; repStart "-8302"; ### ERV316A3_4q32.3a ### chr4 rmsk gene 163690795 163691360 . - . gene_id "ERV316A3_4q32.3a"; transcript_id "ERV316A3_4q32.3a"; locus "ERV316A3_4q32.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0890"; model_cov "529"; model_pct "10.1"; chr4 rmsk exon 163690795 163691360 1035 - . gene_id "ERV316A3_4q32.3a"; transcript_id "ERV316A3_4q32.3a"; locus "ERV316A3_4q32.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0890"; repClass "LTR"; repEnd "4729"; repFamily "ERVL"; repLeft "4200"; repStart "-497"; ### ERVLE_4q32.3a ### chr4 rmsk gene 163692740 163693746 . + . gene_id "ERVLE_4q32.3a"; transcript_id "ERVLE_4q32.3a"; locus "ERVLE_4q32.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1214"; model_cov "1049"; model_pct "18.5"; chr4 rmsk exon 163692740 163693746 1792 + . gene_id "ERVLE_4q32.3a"; transcript_id "ERVLE_4q32.3a"; locus "ERVLE_4q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1214"; repClass "LTR"; repEnd "3327"; repFamily "ERVL"; repLeft "-2340"; repStart "2278"; ### ERVLE_4q32.3b ### chr4 rmsk gene 163937641 163941670 . - . gene_id "ERVLE_4q32.3b"; transcript_id "ERVLE_4q32.3b"; locus "ERVLE_4q32.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1215"; model_cov "1388"; model_pct "24.5"; chr4 rmsk exon 163937641 163938396 2244 - . gene_id "ERVLE_4q32.3b"; transcript_id "ERVLE_4q32.3b"; locus "ERVLE_4q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1215"; repClass "LTR"; repEnd "4981"; repFamily "ERVL"; repLeft "4201"; repStart "-686"; chr4 rmsk exon 163938509 163938588 259 - . gene_id "ERVLE_4q32.3b"; transcript_id "ERVLE_4q32.3b"; locus "ERVLE_4q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1215"; repClass "LTR"; repEnd "4167"; repFamily "ERVL"; repLeft "4088"; repStart "-1500"; chr4 rmsk exon 163939412 163939820 979 - . gene_id "ERVLE_4q32.3b"; transcript_id "ERVLE_4q32.3b"; locus "ERVLE_4q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1215"; repClass "LTR"; repEnd "4021"; repFamily "ERVL"; repLeft "3586"; repStart "-1646"; chr4 rmsk exon 163941575 163941670 319 - . gene_id "ERVLE_4q32.3b"; transcript_id "ERVLE_4q32.3b"; locus "ERVLE_4q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1215"; repClass "LTR"; repEnd "3744"; repFamily "ERVL"; repLeft "3650"; repStart "-1923"; ### HERVW_4q32.3 ### chr4 rmsk gene 164655632 164658152 . + . gene_id "HERVW_4q32.3"; transcript_id "HERVW_4q32.3"; locus "HERVW_4q32.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0108"; model_cov "2222"; model_pct "25.8"; chr4 rmsk exon 164655632 164657840 17943 + . gene_id "HERVW_4q32.3"; transcript_id "HERVW_4q32.3"; locus "HERVW_4q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0108"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "6404"; chr4 rmsk exon 164657841 164658152 2413 + . gene_id "HERVW_4q32.3"; transcript_id "HERVW_4q32.3"; locus "HERVW_4q32.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0108"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL_4q32.3a ### chr4 rmsk gene 164688412 164692541 . + . gene_id "HERVL_4q32.3a"; transcript_id "HERVL_4q32.3a"; locus "HERVL_4q32.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0445"; model_cov "4210"; model_pct "74.5"; chr4 rmsk exon 164688412 164692541 21276 + . gene_id "HERVL_4q32.3a"; transcript_id "HERVL_4q32.3a"; locus "HERVL_4q32.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0445"; repClass "LTR"; repEnd "4258"; repFamily "ERVL"; repLeft "-1396"; repStart "48"; ### HERVK11_4q32.3 ### chr4 rmsk gene 164748862 164753249 . + . gene_id "HERVK11_4q32.3"; transcript_id "HERVK11_4q32.3"; locus "HERVK11_4q32.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0033"; model_cov "3420"; model_pct "43.0"; chr4 rmsk exon 164748862 164749811 6723 + . gene_id "HERVK11_4q32.3"; transcript_id "HERVK11_4q32.3"; locus "HERVK11_4q32.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0033"; repClass "LTR"; repEnd "2954"; repFamily "ERVK"; repLeft "-4999"; repStart "2001"; chr4 rmsk exon 164749802 164752244 18796 + . gene_id "HERVK11_4q32.3"; transcript_id "HERVK11_4q32.3"; locus "HERVK11_4q32.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0033"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5486"; chr4 rmsk exon 164752245 164753249 4586 + . gene_id "HERVK11_4q32.3"; transcript_id "HERVK11_4q32.3"; locus "HERVK11_4q32.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0033"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "4"; ### HERVL74_4q32.3 ### chr4 rmsk gene 164949906 164952642 . + . gene_id "HERVL74_4q32.3"; transcript_id "HERVL74_4q32.3"; locus "HERVL74_4q32.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0027"; model_cov "2840"; model_pct "50.0"; chr4 rmsk exon 164949906 164950191 720 + . gene_id "HERVL74_4q32.3"; transcript_id "HERVL74_4q32.3"; locus "HERVL74_4q32.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0027"; repClass "LTR"; repEnd "2448"; repFamily "ERVL"; repLeft "-3237"; repStart "2133"; chr4 rmsk exon 164950529 164952642 4662 + . gene_id "HERVL74_4q32.3"; transcript_id "HERVL74_4q32.3"; locus "HERVL74_4q32.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0027"; repClass "LTR"; repEnd "5679"; repFamily "ERVL"; repLeft "-6"; repStart "3154"; ### HML2_4q32.3 ### chr4 rmsk gene 164995688 165002916 . + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0040"; model_cov "4910"; model_pct "65.2"; chr4 rmsk exon 164995688 164996655 7694 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 164996656 164999353 21428 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1"; chr4 rmsk exon 164999332 164999426 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5043"; repFamily "ERVK"; repLeft "-2493"; repStart "4952"; chr4 rmsk exon 164999735 165000000 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5301"; repFamily "ERVK"; repLeft "-2235"; repStart "5044"; chr4 rmsk exon 165000001 165000233 1948 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5302"; chr4 rmsk exon 165000233 165001857 13233 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr4 rmsk exon 165001953 165002916 7826 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_4q32.3b ### chr4 rmsk gene 165124589 165127909 . + . gene_id "HERVL_4q32.3b"; transcript_id "HERVL_4q32.3b"; locus "HERVL_4q32.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0446"; model_cov "884"; model_pct "15.6"; chr4 rmsk exon 165124589 165124984 6075 + . gene_id "HERVL_4q32.3b"; transcript_id "HERVL_4q32.3b"; locus "HERVL_4q32.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0446"; repClass "LTR"; repEnd "5125"; repFamily "ERVL"; repLeft "-529"; repStart "4768"; chr4 rmsk exon 165126502 165126749 6075 + . gene_id "HERVL_4q32.3b"; transcript_id "HERVL_4q32.3b"; locus "HERVL_4q32.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0446"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "-290"; repStart "5126"; chr4 rmsk exon 165127040 165127341 6075 + . gene_id "HERVL_4q32.3b"; transcript_id "HERVL_4q32.3b"; locus "HERVL_4q32.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0446"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5365"; chr4 rmsk exon 165127342 165127909 2078 + . gene_id "HERVL_4q32.3b"; transcript_id "HERVL_4q32.3b"; locus "HERVL_4q32.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0446"; repClass "LTR"; repEnd "551"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### HERVFRD_4q32.3 ### chr4 rmsk gene 165470030 165476747 . - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0064"; model_cov "6079"; model_pct "84.4"; chr4 rmsk exon 165470030 165470723 3800 - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0064"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "1"; repStart "-30"; chr4 rmsk exon 165470724 165472552 9512 - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0064"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "4713"; repStart "-8"; chr4 rmsk exon 165472555 165474298 8129 - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0064"; repClass "LTR"; repEnd "4540"; repFamily "ERV1"; repLeft "2787"; repStart "-2665"; chr4 rmsk exon 165474293 165476023 5774 - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0064"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "8"; repStart "-5355"; chr4 rmsk exon 165476025 165476747 4286 - . gene_id "HERVFRD_4q32.3"; transcript_id "HERVFRD_4q32.3"; locus "HERVFRD_4q32.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0064"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "-12"; ### ERV316A3_4q32.3b ### chr4 rmsk gene 165735144 165736514 . + . gene_id "ERV316A3_4q32.3b"; transcript_id "ERV316A3_4q32.3b"; locus "ERV316A3_4q32.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0893"; model_cov "600"; model_pct "11.5"; chr4 rmsk exon 165735144 165735237 257 + . gene_id "ERV316A3_4q32.3b"; transcript_id "ERV316A3_4q32.3b"; locus "ERV316A3_4q32.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0893"; repClass "LTR"; repEnd "102"; repFamily "ERVL"; repLeft "-336"; repStart "1"; chr4 rmsk exon 165735618 165736003 1909 + . gene_id "ERV316A3_4q32.3b"; transcript_id "ERV316A3_4q32.3b"; locus "ERV316A3_4q32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0893"; repClass "LTR"; repEnd "4973"; repFamily "ERVL"; repLeft "-253"; repStart "4574"; chr4 rmsk exon 165736310 165736514 1909 + . gene_id "ERV316A3_4q32.3b"; transcript_id "ERV316A3_4q32.3b"; locus "ERV316A3_4q32.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0893"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-51"; repStart "4974"; ### ERVLE_4q32.3c ### chr4 rmsk gene 165749305 165749956 . + . gene_id "ERVLE_4q32.3c"; transcript_id "ERVLE_4q32.3c"; locus "ERVLE_4q32.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1218"; model_cov "596"; model_pct "10.5"; chr4 rmsk exon 165749305 165749588 312 + . gene_id "ERVLE_4q32.3c"; transcript_id "ERVLE_4q32.3c"; locus "ERVLE_4q32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1218"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5118"; repStart "278"; chr4 rmsk exon 165749642 165749956 573 + . gene_id "ERVLE_4q32.3c"; transcript_id "ERVLE_4q32.3c"; locus "ERVLE_4q32.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1218"; repClass "LTR"; repEnd "1049"; repFamily "ERVL"; repLeft "-4618"; repStart "724"; ### ERVLE_4q32.3d ### chr4 rmsk gene 165753076 165754632 . - . gene_id "ERVLE_4q32.3d"; transcript_id "ERVLE_4q32.3d"; locus "ERVLE_4q32.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1219"; model_cov "1508"; model_pct "26.6"; chr4 rmsk exon 165753076 165754042 930 - . gene_id "ERVLE_4q32.3d"; transcript_id "ERVLE_4q32.3d"; locus "ERVLE_4q32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1219"; repClass "LTR"; repEnd "1772"; repFamily "ERVL"; repLeft "805"; repStart "-3895"; chr4 rmsk exon 165754105 165754632 450 - . gene_id "ERVLE_4q32.3d"; transcript_id "ERVLE_4q32.3d"; locus "ERVLE_4q32.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1219"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "7"; repStart "-5119"; ### ERV316A3_4q32.3c ### chr4 rmsk gene 165971222 165975281 . - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0894"; model_cov "2220"; model_pct "42.5"; chr4 rmsk exon 165971222 165971667 944 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "5004"; repFamily "ERVL"; repLeft "4547"; repStart "-222"; chr4 rmsk exon 165972097 165972999 1207 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "2396"; repFamily "ERVL"; repLeft "1356"; repStart "-2830"; chr4 rmsk exon 165973412 165973660 520 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "906"; repFamily "ERVL"; repLeft "649"; repStart "-4320"; chr4 rmsk exon 165973966 165973984 520 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "648"; repFamily "ERVL"; repLeft "630"; repStart "-4578"; chr4 rmsk exon 165974098 165974133 375 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "417"; repStart "-4776"; chr4 rmsk exon 165974440 165974857 452 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "1"; repStart "-4810"; chr4 rmsk exon 165974858 165975281 1393 - . gene_id "ERV316A3_4q32.3c"; transcript_id "ERV316A3_4q32.3c"; locus "ERV316A3_4q32.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0894"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "7"; repStart "0"; ### MER61_4q32.3 ### chr4 rmsk gene 166198160 166203451 . + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0145"; model_cov "4579"; model_pct "87.8"; chr4 rmsk exon 166198160 166198478 1592 + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0145"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 166198479 166199160 2151 + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0145"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr4 rmsk exon 166199189 166199331 24505 + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0145"; repClass "LTR"; repEnd "1559"; repFamily "ERV1"; repLeft "-3658"; repStart "1408"; chr4 rmsk exon 166199575 166203133 24505 + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0145"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "-5"; repStart "1560"; chr4 rmsk exon 166203137 166203451 1654 + . gene_id "MER61_4q32.3"; transcript_id "MER61_4q32.3"; locus "MER61_4q32.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0145"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_4q32.3a ### chr4 rmsk gene 166434101 166436782 . + . gene_id "ERVLB4_4q32.3a"; transcript_id "ERVLB4_4q32.3a"; locus "ERVLB4_4q32.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0553"; model_cov "2800"; model_pct "49.0"; chr4 rmsk exon 166434101 166436782 13396 + . gene_id "ERVLB4_4q32.3a"; transcript_id "ERVLB4_4q32.3a"; locus "ERVLB4_4q32.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0553"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "2914"; ### HERVH_4q32.3a ### chr4 rmsk gene 166520700 166526430 . + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0436"; model_cov "5117"; model_pct "66.3"; chr4 rmsk exon 166520700 166521091 2448 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-9"; repStart "1"; chr4 rmsk exon 166521101 166523942 15779 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 166523922 166524772 6258 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr4 rmsk exon 166524776 166525438 4414 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 166525440 166525653 1327 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 166525652 166526029 2349 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 166526030 166526430 2596 + . gene_id "HERVH_4q32.3a"; transcript_id "HERVH_4q32.3a"; locus "HERVH_4q32.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0436"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_4q32.3b ### chr4 rmsk gene 166629710 166631888 . + . gene_id "ERVLB4_4q32.3b"; transcript_id "ERVLB4_4q32.3b"; locus "ERVLB4_4q32.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0554"; model_cov "1795"; model_pct "31.4"; chr4 rmsk exon 166629710 166630024 371 + . gene_id "ERVLB4_4q32.3b"; transcript_id "ERVLB4_4q32.3b"; locus "ERVLB4_4q32.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0554"; repClass "LTR"; repEnd "1042"; repFamily "ERVL"; repLeft "-4672"; repStart "719"; chr4 rmsk exon 166630102 166630805 582 + . gene_id "ERVLB4_4q32.3b"; transcript_id "ERVLB4_4q32.3b"; locus "ERVLB4_4q32.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0554"; repClass "LTR"; repEnd "1660"; repFamily "ERVL"; repLeft "-4054"; repStart "964"; chr4 rmsk exon 166631151 166631888 1056 + . gene_id "ERVLB4_4q32.3b"; transcript_id "ERVLB4_4q32.3b"; locus "ERVLB4_4q32.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0554"; repClass "LTR"; repEnd "2514"; repFamily "ERVL"; repLeft "-3200"; repStart "1738"; ### ERV316A3_4q32.3d ### chr4 rmsk gene 166656293 166658246 . + . gene_id "ERV316A3_4q32.3d"; transcript_id "ERV316A3_4q32.3d"; locus "ERV316A3_4q32.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0896"; model_cov "1417"; model_pct "27.1"; chr4 rmsk exon 166656293 166657697 2986 + . gene_id "ERV316A3_4q32.3d"; transcript_id "ERV316A3_4q32.3d"; locus "ERV316A3_4q32.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0896"; repClass "LTR"; repEnd "5128"; repFamily "ERVL"; repLeft "-98"; repStart "3711"; chr4 rmsk exon 166657781 166658246 735 + . gene_id "ERV316A3_4q32.3d"; transcript_id "ERV316A3_4q32.3d"; locus "ERV316A3_4q32.3d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0896"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HERVL_4q32.3c ### chr4 rmsk gene 166705636 166706841 . + . gene_id "HERVL_4q32.3c"; transcript_id "HERVL_4q32.3c"; locus "HERVL_4q32.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0447"; model_cov "819"; model_pct "14.5"; chr4 rmsk exon 166705636 166706236 5675 + . gene_id "HERVL_4q32.3c"; transcript_id "HERVL_4q32.3c"; locus "HERVL_4q32.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0447"; repClass "LTR"; repEnd "1721"; repFamily "ERVL"; repLeft "-3933"; repStart "1121"; chr4 rmsk exon 166706552 166706772 5675 + . gene_id "HERVL_4q32.3c"; transcript_id "HERVL_4q32.3c"; locus "HERVL_4q32.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0447"; repClass "LTR"; repEnd "1941"; repFamily "ERVL"; repLeft "-3713"; repStart "1722"; chr4 rmsk exon 166706773 166706841 430 + . gene_id "HERVL_4q32.3c"; transcript_id "HERVL_4q32.3c"; locus "HERVL_4q32.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0447"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-7"; repStart "378"; ### HERVH_4q32.3b ### chr4 rmsk gene 166716125 166722054 . + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0439"; model_cov "5068"; model_pct "65.7"; chr4 rmsk exon 166716125 166716575 3430 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 166716578 166719851 20377 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr4 rmsk exon 166719842 166720344 3326 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr4 rmsk exon 166720347 166721017 4423 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "5156"; repFamily "ERV1"; repLeft "-2557"; repStart "4488"; chr4 rmsk exon 166721010 166721225 1292 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 166721224 166721603 2562 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 166721604 166722054 3431 + . gene_id "HERVH_4q32.3b"; transcript_id "HERVH_4q32.3b"; locus "HERVH_4q32.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0439"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL40_4q32.3a ### chr4 rmsk gene 166898452 166902117 . + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0129"; model_cov "1897"; model_pct "34.3"; chr4 rmsk exon 166898452 166898694 623 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "-3954"; repStart "1346"; chr4 rmsk exon 166899342 166899496 1405 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "2250"; repFamily "ERVL"; repLeft "-3280"; repStart "2109"; chr4 rmsk exon 166899815 166900107 1405 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "2573"; repFamily "ERVL"; repLeft "-2957"; repStart "2251"; chr4 rmsk exon 166900100 166900941 1969 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-874"; repStart "3703"; chr4 rmsk exon 166901750 166901991 620 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "-1"; repStart "5278"; chr4 rmsk exon 166901993 166902117 594 + . gene_id "HERVL40_4q32.3a"; transcript_id "HERVL40_4q32.3a"; locus "HERVL40_4q32.3a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0129"; repClass "LTR"; repEnd "125"; repFamily "ERVL"; repLeft "-394"; repStart "1"; ### ERVLE_4q32.3e ### chr4 rmsk gene 167021995 167023223 . + . gene_id "ERVLE_4q32.3e"; transcript_id "ERVLE_4q32.3e"; locus "ERVLE_4q32.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1221"; model_cov "1074"; model_pct "19.0"; chr4 rmsk exon 167021995 167022245 348 + . gene_id "ERVLE_4q32.3e"; transcript_id "ERVLE_4q32.3e"; locus "ERVLE_4q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1221"; repClass "LTR"; repEnd "3106"; repFamily "ERVL"; repLeft "-2561"; repStart "2763"; chr4 rmsk exon 167022413 167022572 360 + . gene_id "ERVLE_4q32.3e"; transcript_id "ERVLE_4q32.3e"; locus "ERVLE_4q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1221"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2061"; repStart "3443"; chr4 rmsk exon 167022655 167023223 641 + . gene_id "ERVLE_4q32.3e"; transcript_id "ERVLE_4q32.3e"; locus "ERVLE_4q32.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1221"; repClass "LTR"; repEnd "4216"; repFamily "ERVL"; repLeft "-1451"; repStart "3648"; ### ERV316A3_4q32.3e ### chr4 rmsk gene 167407423 167408491 . + . gene_id "ERV316A3_4q32.3e"; transcript_id "ERV316A3_4q32.3e"; locus "ERV316A3_4q32.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0897"; model_cov "671"; model_pct "12.8"; chr4 rmsk exon 167407423 167407682 423 + . gene_id "ERV316A3_4q32.3e"; transcript_id "ERV316A3_4q32.3e"; locus "ERV316A3_4q32.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0897"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "184"; chr4 rmsk exon 167407804 167407960 773 + . gene_id "ERV316A3_4q32.3e"; transcript_id "ERV316A3_4q32.3e"; locus "ERV316A3_4q32.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0897"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "2255"; chr4 rmsk exon 167407990 167408491 1078 + . gene_id "ERV316A3_4q32.3e"; transcript_id "ERV316A3_4q32.3e"; locus "ERV316A3_4q32.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0897"; repClass "LTR"; repEnd "2678"; repFamily "ERVL"; repLeft "-2548"; repStart "2163"; ### HUERSP3_4q32.3a ### chr4 rmsk gene 167416414 167424407 . + . gene_id "HUERSP3_4q32.3a"; transcript_id "HUERSP3_4q32.3a"; locus "HUERSP3_4q32.3a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0055"; model_cov "7086"; model_pct "79.4"; chr4 rmsk exon 167416414 167416884 2782 + . gene_id "HUERSP3_4q32.3a"; transcript_id "HUERSP3_4q32.3a"; locus "HUERSP3_4q32.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0055"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "-168"; repStart "1"; chr4 rmsk exon 167416885 167423786 30915 + . gene_id "HUERSP3_4q32.3a"; transcript_id "HUERSP3_4q32.3a"; locus "HUERSP3_4q32.3a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0055"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "-4"; repStart "1829"; chr4 rmsk exon 167423790 167424407 3467 + . gene_id "HUERSP3_4q32.3a"; transcript_id "HUERSP3_4q32.3a"; locus "HUERSP3_4q32.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0055"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q32.3f ### chr4 rmsk gene 167433615 167434314 . + . gene_id "ERVLE_4q32.3f"; transcript_id "ERVLE_4q32.3f"; locus "ERVLE_4q32.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1222"; model_cov "697"; model_pct "12.3"; chr4 rmsk exon 167433615 167434314 668 + . gene_id "ERVLE_4q32.3f"; transcript_id "ERVLE_4q32.3f"; locus "ERVLE_4q32.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1222"; repClass "LTR"; repEnd "3748"; repFamily "ERVL"; repLeft "-1919"; repStart "3051"; ### HERVH_4q32.3c ### chr4 rmsk gene 167436066 167441183 . - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0440"; model_cov "4801"; model_pct "62.2"; chr4 rmsk exon 167436066 167436456 2234 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-40"; chr4 rmsk exon 167436457 167436834 2429 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 167436833 167437066 1326 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5587"; repStart "-1894"; chr4 rmsk exon 167437052 167437620 2385 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 167437623 167438031 2828 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3582"; repStart "-3720"; chr4 rmsk exon 167438033 167438144 656 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "3140"; repStart "-4461"; chr4 rmsk exon 167438124 167441076 16470 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 167441077 167441183 914 - . gene_id "HERVH_4q32.3c"; transcript_id "HERVH_4q32.3c"; locus "HERVH_4q32.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0440"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "344"; repStart "0"; ### MER4_4q32.3 ### chr4 rmsk gene 167577402 167583949 . - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0261"; model_cov "4742"; model_pct "71.9"; chr4 rmsk exon 167577402 167578683 7822 - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0261"; repClass "LTR"; repEnd "5138"; repFamily "ERV1"; repLeft "3837"; repStart "-1460"; chr4 rmsk exon 167578678 167579592 3612 - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0261"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "2738"; repStart "-2912"; chr4 rmsk exon 167579830 167581389 6846 - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0261"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "837"; repStart "-4103"; chr4 rmsk exon 167582745 167583487 2287 - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0261"; repClass "LTR"; repEnd "836"; repFamily "ERV1"; repLeft "1"; repStart "-5762"; chr4 rmsk exon 167583492 167583949 3022 - . gene_id "MER4_4q32.3"; transcript_id "MER4_4q32.3"; locus "MER4_4q32.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0261"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVH_4q32.3d ### chr4 rmsk gene 167876312 167882021 . + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0441"; model_cov "5329"; model_pct "69.1"; chr4 rmsk exon 167876312 167876709 2510 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 167876712 167879527 17545 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "3203"; repFamily "ERV1"; repLeft "-4510"; repStart "-5"; chr4 rmsk exon 167879507 167880360 6136 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr4 rmsk exon 167880364 167881030 4333 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr4 rmsk exon 167881032 167881246 1356 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 167881247 167881623 2336 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 167881626 167882021 2615 + . gene_id "HERVH_4q32.3d"; transcript_id "HERVH_4q32.3d"; locus "HERVH_4q32.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0441"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; ### HERVH_4q32.3e ### chr4 rmsk gene 167922851 167928626 . + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0442"; model_cov "4912"; model_pct "63.7"; chr4 rmsk exon 167922851 167923315 2918 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 167923318 167926293 18765 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 167926288 167926435 786 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr4 rmsk exon 167926426 167926938 3306 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3492"; chr4 rmsk exon 167926934 167927595 4108 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr4 rmsk exon 167927597 167927813 1317 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 167927814 167928213 1918 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 167928214 167928626 2846 + . gene_id "HERVH_4q32.3e"; transcript_id "HERVH_4q32.3e"; locus "HERVH_4q32.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0442"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_4q32.3f ### chr4 rmsk gene 168013893 168017945 . - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0898"; model_cov "2120"; model_pct "40.6"; chr4 rmsk exon 168013893 168014076 556 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "286"; repStart "0"; chr4 rmsk exon 168014098 168014554 4264 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "4246"; repFamily "ERVL"; repLeft "3779"; repStart "-980"; chr4 rmsk exon 168015068 168015748 4264 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "3778"; repFamily "ERVL"; repLeft "3112"; repStart "-1448"; chr4 rmsk exon 168016043 168016534 4264 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "3111"; repFamily "ERVL"; repLeft "2633"; repStart "-2115"; chr4 rmsk exon 168016560 168017056 1146 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "827"; repFamily "ERVL"; repLeft "318"; repStart "-4399"; chr4 rmsk exon 168017551 168017945 1413 - . gene_id "ERV316A3_4q32.3f"; transcript_id "ERV316A3_4q32.3f"; locus "ERV316A3_4q32.3f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0898"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "1"; repStart "-54"; ### HUERSP3_4q32.3b ### chr4 rmsk gene 168026356 168029614 . - . gene_id "HUERSP3_4q32.3b"; transcript_id "HUERSP3_4q32.3b"; locus "HUERSP3_4q32.3b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0056"; model_cov "3190"; model_pct "35.8"; chr4 rmsk exon 168026356 168029614 11829 - . gene_id "HUERSP3_4q32.3b"; transcript_id "HUERSP3_4q32.3b"; locus "HUERSP3_4q32.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0056"; repClass "LTR"; repEnd "3218"; repFamily "ERV1"; repLeft "28"; repStart "-5701"; ### HERVL40_4q32.3b ### chr4 rmsk gene 168144146 168148595 . - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0130"; model_cov "2651"; model_pct "47.9"; chr4 rmsk exon 168144146 168144177 1289 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "4575"; repStart "-927"; chr4 rmsk exon 168144485 168144834 1289 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "4574"; repFamily "ERVL"; repLeft "4201"; repStart "-956"; chr4 rmsk exon 168145855 168145925 4623 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "3941"; repFamily "ERVL"; repLeft "3860"; repStart "-1589"; chr4 rmsk exon 168146209 168147503 4623 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "3859"; repFamily "ERVL"; repLeft "2521"; repStart "-1671"; chr4 rmsk exon 168147504 168148174 1290 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "889"; repStart "-3921"; chr4 rmsk exon 168148465 168148595 1290 - . gene_id "HERVL40_4q32.3b"; transcript_id "HERVL40_4q32.3b"; locus "HERVL40_4q32.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0130"; repClass "LTR"; repEnd "888"; repFamily "ERVL"; repLeft "777"; repStart "-4642"; ### ERVLB4_4q32.3c ### chr4 rmsk gene 168434326 168439585 . + . gene_id "ERVLB4_4q32.3c"; transcript_id "ERVLB4_4q32.3c"; locus "ERVLB4_4q32.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0556"; model_cov "3263"; model_pct "57.1"; chr4 rmsk exon 168434326 168436223 8409 + . gene_id "ERVLB4_4q32.3c"; transcript_id "ERVLB4_4q32.3c"; locus "ERVLB4_4q32.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0556"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "-2612"; repStart "1222"; chr4 rmsk exon 168436236 168437127 4503 + . gene_id "ERVLB4_4q32.3c"; transcript_id "ERVLB4_4q32.3c"; locus "ERVLB4_4q32.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0556"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "-521"; repStart "4313"; chr4 rmsk exon 168438708 168439171 1822 + . gene_id "ERVLB4_4q32.3c"; transcript_id "ERVLB4_4q32.3c"; locus "ERVLB4_4q32.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0556"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5211"; chr4 rmsk exon 168439175 168439585 1377 + . gene_id "ERVLB4_4q32.3c"; transcript_id "ERVLB4_4q32.3c"; locus "ERVLB4_4q32.3c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0556"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERVLE_4q32.3g ### chr4 rmsk gene 168968326 168969306 . - . gene_id "ERVLE_4q32.3g"; transcript_id "ERVLE_4q32.3g"; locus "ERVLE_4q32.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1223"; model_cov "992"; model_pct "17.5"; chr4 rmsk exon 168968326 168969306 2247 - . gene_id "ERVLE_4q32.3g"; transcript_id "ERVLE_4q32.3g"; locus "ERVLE_4q32.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1223"; repClass "LTR"; repEnd "2674"; repFamily "ERVL"; repLeft "1682"; repStart "-2993"; ### ERVLB4_4q33 ### chr4 rmsk gene 169302746 169303952 . - . gene_id "ERVLB4_4q33"; transcript_id "ERVLB4_4q33"; locus "ERVLB4_4q33"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0557"; model_cov "740"; model_pct "13.0"; chr4 rmsk exon 169302746 169303233 2093 - . gene_id "ERVLB4_4q33"; transcript_id "ERVLB4_4q33"; locus "ERVLB4_4q33"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0557"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 169303234 169303952 3483 - . gene_id "ERVLB4_4q33"; transcript_id "ERVLB4_4q33"; locus "ERVLB4_4q33"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0557"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4974"; repStart "0"; ### HERVL_4q33a ### chr4 rmsk gene 169316551 169318145 . + . gene_id "HERVL_4q33a"; transcript_id "HERVL_4q33a"; locus "HERVL_4q33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0449"; model_cov "1179"; model_pct "20.9"; chr4 rmsk exon 169316551 169316989 3737 + . gene_id "HERVL_4q33a"; transcript_id "HERVL_4q33a"; locus "HERVL_4q33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0449"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 169316990 169318026 8230 + . gene_id "HERVL_4q33a"; transcript_id "HERVL_4q33a"; locus "HERVL_4q33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0449"; repClass "LTR"; repEnd "1034"; repFamily "ERVL"; repLeft "-4620"; repStart "1"; chr4 rmsk exon 169317999 169318145 1229 + . gene_id "HERVL_4q33a"; transcript_id "HERVL_4q33a"; locus "HERVL_4q33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0449"; repClass "LTR"; repEnd "2336"; repFamily "ERVL"; repLeft "-3318"; repStart "2190"; ### HERVL_4q33b ### chr4 rmsk gene 169323856 169327642 . + . gene_id "HERVL_4q33b"; transcript_id "HERVL_4q33b"; locus "HERVL_4q33b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0450"; model_cov "3330"; model_pct "58.9"; chr4 rmsk exon 169323856 169327208 26822 + . gene_id "HERVL_4q33b"; transcript_id "HERVL_4q33b"; locus "HERVL_4q33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0450"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2324"; chr4 rmsk exon 169327209 169327642 3452 + . gene_id "HERVL_4q33b"; transcript_id "HERVL_4q33b"; locus "HERVL_4q33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0450"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL40_4q33 ### chr4 rmsk gene 169336002 169344307 . - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0131"; model_cov "4118"; model_pct "74.5"; chr4 rmsk exon 169336002 169336467 1630 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 169337011 169337113 842 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "5509"; repFamily "ERVL"; repLeft "5407"; repStart "-21"; chr4 rmsk exon 169337418 169337634 842 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "5406"; repFamily "ERVL"; repLeft "5277"; repStart "-124"; chr4 rmsk exon 169337683 169337733 280 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "5231"; repStart "-248"; chr4 rmsk exon 169339888 169340570 9425 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "3725"; repStart "-1085"; chr4 rmsk exon 169340852 169343523 9425 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "3724"; repFamily "ERVL"; repLeft "993"; repStart "-1806"; chr4 rmsk exon 169343523 169343898 1243 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-5144"; chr4 rmsk exon 169343900 169344307 1659 - . gene_id "HERVL40_4q33"; transcript_id "HERVL40_4q33"; locus "HERVL40_4q33"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0131"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVFRD_4q33 ### chr4 rmsk gene 170106215 170107331 . + . gene_id "HERVFRD_4q33"; transcript_id "HERVFRD_4q33"; locus "HERVFRD_4q33"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0065"; model_cov "1463"; model_pct "20.3"; chr4 rmsk exon 170106215 170107041 2916 + . gene_id "HERVFRD_4q33"; transcript_id "HERVFRD_4q33"; locus "HERVFRD_4q33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0065"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "-9"; repStart "5733"; chr4 rmsk exon 170107042 170107127 415 + . gene_id "HERVFRD_4q33"; transcript_id "HERVFRD_4q33"; locus "HERVFRD_4q33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0065"; repClass "LTR"; repEnd "89"; repFamily "ERV1"; repLeft "-645"; repStart "1"; chr4 rmsk exon 170107124 170107331 1317 + . gene_id "HERVFRD_4q33"; transcript_id "HERVFRD_4q33"; locus "HERVFRD_4q33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0065"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "504"; ### HERVH_4q33a ### chr4 rmsk gene 170116430 170122158 . + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0443"; model_cov "5065"; model_pct "65.7"; chr4 rmsk exon 170116430 170116838 2811 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 170116841 170119995 18774 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr4 rmsk exon 170119986 170120496 3189 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3492"; chr4 rmsk exon 170120492 170121152 4103 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr4 rmsk exon 170121154 170121371 1260 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 170121372 170121749 2248 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 170121750 170122158 2849 + . gene_id "HERVH_4q33a"; transcript_id "HERVH_4q33a"; locus "HERVH_4q33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0443"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVK14C_4q33 ### chr4 rmsk gene 170126352 170133883 . - . gene_id "HERVK14C_4q33"; transcript_id "HERVK14C_4q33"; locus "HERVK14C_4q33"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0007"; model_cov "5663"; model_pct "76.2"; chr4 rmsk exon 170126352 170126865 45154 - . gene_id "HERVK14C_4q33"; transcript_id "HERVK14C_4q33"; locus "HERVK14C_4q33"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0007"; repClass "LTR"; repEnd "5665"; repFamily "ERVK"; repLeft "5152"; repStart "-1769"; chr4 rmsk exon 170128158 170133298 45154 - . gene_id "HERVK14C_4q33"; transcript_id "HERVK14C_4q33"; locus "HERVK14C_4q33"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0007"; repClass "LTR"; repEnd "5151"; repFamily "ERVK"; repLeft "1"; repStart "-2283"; chr4 rmsk exon 170133299 170133883 4694 - . gene_id "HERVK14C_4q33"; transcript_id "HERVK14C_4q33"; locus "HERVK14C_4q33"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0007"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL32_4q33 ### chr4 rmsk gene 170136462 170137737 . - . gene_id "HERVL32_4q33"; transcript_id "HERVL32_4q33"; locus "HERVL32_4q33"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0016"; model_cov "862"; model_pct "25.2"; chr4 rmsk exon 170136462 170137318 2839 - . gene_id "HERVL32_4q33"; transcript_id "HERVL32_4q33"; locus "HERVL32_4q33"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0016"; repClass "LTR"; repEnd "863"; repFamily "ERVL"; repLeft "1"; repStart "-2555"; chr4 rmsk exon 170137319 170137737 2283 - . gene_id "HERVL32_4q33"; transcript_id "HERVL32_4q33"; locus "HERVL32_4q33"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0016"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVW_4q33a ### chr4 rmsk gene 170190193 170191502 . - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0109"; model_cov "1025"; model_pct "11.9"; chr4 rmsk exon 170190193 170190506 2033 - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0109"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr4 rmsk exon 170190507 170190799 2225 - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0109"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr4 rmsk exon 170190790 170190828 304 - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0109"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr4 rmsk exon 170190825 170190986 1218 - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0109"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6986"; repStart "-1479"; chr4 rmsk exon 170190979 170191502 25224 - . gene_id "HERVW_4q33a"; transcript_id "HERVW_4q33a"; locus "HERVW_4q33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0109"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "5367"; repStart "-2724"; ### HERVW_4q33b ### chr4 rmsk gene 170191574 170195620 . - . gene_id "HERVW_4q33b"; transcript_id "HERVW_4q33b"; locus "HERVW_4q33b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0110"; model_cov "4113"; model_pct "47.7"; chr4 rmsk exon 170191574 170194441 25224 - . gene_id "HERVW_4q33b"; transcript_id "HERVW_4q33b"; locus "HERVW_4q33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0110"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "2966"; repStart "-2724"; chr4 rmsk exon 170194427 170195620 8607 - . gene_id "HERVW_4q33b"; transcript_id "HERVW_4q33b"; locus "HERVW_4q33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0110"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "837"; repStart "-6612"; ### ERVLE_4q33a ### chr4 rmsk gene 170295043 170296738 . + . gene_id "ERVLE_4q33a"; transcript_id "ERVLE_4q33a"; locus "ERVLE_4q33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1224"; model_cov "1384"; model_pct "24.4"; chr4 rmsk exon 170295043 170296314 2587 + . gene_id "ERVLE_4q33a"; transcript_id "ERVLE_4q33a"; locus "ERVLE_4q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1224"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "-1769"; repStart "2572"; chr4 rmsk exon 170296679 170296738 251 + . gene_id "ERVLE_4q33a"; transcript_id "ERVLE_4q33a"; locus "ERVLE_4q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1224"; repClass "LTR"; repEnd "4999"; repFamily "ERVL"; repLeft "-668"; repStart "4941"; ### HERVH_4q33b ### chr4 rmsk gene 170677696 170682334 . + . gene_id "HERVH_4q33b"; transcript_id "HERVH_4q33b"; locus "HERVH_4q33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0444"; model_cov "3721"; model_pct "48.2"; chr4 rmsk exon 170677696 170678044 2115 + . gene_id "HERVH_4q33b"; transcript_id "HERVH_4q33b"; locus "HERVH_4q33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0444"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 170678047 170680894 15612 + . gene_id "HERVH_4q33b"; transcript_id "HERVH_4q33b"; locus "HERVH_4q33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0444"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "1"; chr4 rmsk exon 170680891 170681934 5236 + . gene_id "HERVH_4q33b"; transcript_id "HERVH_4q33b"; locus "HERVH_4q33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0444"; repClass "LTR"; repEnd "3877"; repFamily "ERV1"; repLeft "-3836"; repStart "3140"; chr4 rmsk exon 170681935 170682334 2578 + . gene_id "HERVH_4q33b"; transcript_id "HERVH_4q33b"; locus "HERVH_4q33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0444"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10FH_4q33 ### chr4 rmsk gene 170684674 170686131 . + . gene_id "HERVIP10FH_4q33"; transcript_id "HERVIP10FH_4q33"; locus "HERVIP10FH_4q33"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0053"; model_cov "1431"; model_pct "28.0"; chr4 rmsk exon 170684674 170684828 1265 + . gene_id "HERVIP10FH_4q33"; transcript_id "HERVIP10FH_4q33"; locus "HERVIP10FH_4q33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0053"; repClass "LTR"; repEnd "-2119"; repFamily "ERV1"; repLeft "-7221"; repStart "-2273"; chr4 rmsk exon 170684844 170686131 9573 + . gene_id "HERVIP10FH_4q33"; transcript_id "HERVIP10FH_4q33"; locus "HERVIP10FH_4q33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0053"; repClass "LTR"; repEnd "3208"; repFamily "ERV1"; repLeft "-1894"; repStart "1931"; ### HERVE_4q33 ### chr4 rmsk gene 170686572 170690609 . + . gene_id "HERVE_4q33"; transcript_id "HERVE_4q33"; locus "HERVE_4q33"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0046"; model_cov "4092"; model_pct "52.4"; chr4 rmsk exon 170686572 170687445 7396 + . gene_id "HERVE_4q33"; transcript_id "HERVE_4q33"; locus "HERVE_4q33"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0046"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "-2949"; repStart "3989"; chr4 rmsk exon 170687440 170690245 12361 + . gene_id "HERVE_4q33"; transcript_id "HERVE_4q33"; locus "HERVE_4q33"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0046"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "-2"; repStart "4594"; chr4 rmsk exon 170690248 170690421 542 + . gene_id "HERVE_4q33"; transcript_id "HERVE_4q33"; locus "HERVE_4q33"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0046"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "-263"; repStart "41"; chr4 rmsk exon 170690420 170690609 1315 + . gene_id "HERVE_4q33"; transcript_id "HERVE_4q33"; locus "HERVE_4q33"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0046"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "311"; ### MER34B_4q33 ### chr4 rmsk gene 170793337 170795198 . + . gene_id "MER34B_4q33"; transcript_id "MER34B_4q33"; locus "MER34B_4q33"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0096"; model_cov "1710"; model_pct "31.9"; chr4 rmsk exon 170793337 170793521 628 + . gene_id "MER34B_4q33"; transcript_id "MER34B_4q33"; locus "MER34B_4q33"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0096"; repClass "LTR"; repEnd "1435"; repFamily "ERV1"; repLeft "-3921"; repStart "1247"; chr4 rmsk exon 170793538 170793777 531 + . gene_id "MER34B_4q33"; transcript_id "MER34B_4q33"; locus "MER34B_4q33"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0096"; repClass "LTR"; repEnd "1991"; repFamily "ERV1"; repLeft "-3365"; repStart "1771"; chr4 rmsk exon 170793761 170795198 3070 + . gene_id "MER34B_4q33"; transcript_id "MER34B_4q33"; locus "MER34B_4q33"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0096"; repClass "LTR"; repEnd "3445"; repFamily "ERV1"; repLeft "-1911"; repStart "2143"; ### ERVL_4q33 ### chr4 rmsk gene 170837613 170838208 . - . gene_id "ERVL_4q33"; transcript_id "ERVL_4q33"; locus "ERVL_4q33"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0121"; model_cov "736"; model_pct "12.8"; chr4 rmsk exon 170837613 170838208 605 - . gene_id "ERVL_4q33"; transcript_id "ERVL_4q33"; locus "ERVL_4q33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0121"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "1289"; repStart "-3732"; ### ERVLE_4q33b ### chr4 rmsk gene 170992889 170997721 . - . gene_id "ERVLE_4q33b"; transcript_id "ERVLE_4q33b"; locus "ERVLE_4q33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1226"; model_cov "2332"; model_pct "41.2"; chr4 rmsk exon 170992889 170993454 706 - . gene_id "ERVLE_4q33b"; transcript_id "ERVLE_4q33b"; locus "ERVLE_4q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1226"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "3294"; repStart "-1786"; chr4 rmsk exon 170994717 170995992 1749 - . gene_id "ERVLE_4q33b"; transcript_id "ERVLE_4q33b"; locus "ERVLE_4q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1226"; repClass "LTR"; repEnd "3038"; repFamily "ERVL"; repLeft "1730"; repStart "-2629"; chr4 rmsk exon 170996816 170996995 282 - . gene_id "ERVLE_4q33b"; transcript_id "ERVLE_4q33b"; locus "ERVLE_4q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1226"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "1754"; repStart "-3735"; chr4 rmsk exon 170997463 170997721 300 - . gene_id "ERVLE_4q33b"; transcript_id "ERVLE_4q33b"; locus "ERVLE_4q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1226"; repClass "LTR"; repEnd "1292"; repFamily "ERVL"; repLeft "1033"; repStart "-4375"; ### HERVL40_4q34.1a ### chr4 rmsk gene 171031066 171031676 . - . gene_id "HERVL40_4q34.1a"; transcript_id "HERVL40_4q34.1a"; locus "HERVL40_4q34.1a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0132"; model_cov "622"; model_pct "11.2"; chr4 rmsk exon 171031066 171031676 1315 - . gene_id "HERVL40_4q34.1a"; transcript_id "HERVL40_4q34.1a"; locus "HERVL40_4q34.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0132"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "995"; repStart "-3913"; ### MER101_4q34.1a ### chr4 rmsk gene 171053426 171056189 . + . gene_id "MER101_4q34.1a"; transcript_id "MER101_4q34.1a"; locus "MER101_4q34.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0133"; model_cov "3614"; model_pct "54.4"; chr4 rmsk exon 171053426 171053563 2770 + . gene_id "MER101_4q34.1a"; transcript_id "MER101_4q34.1a"; locus "MER101_4q34.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0133"; repClass "LTR"; repEnd "-468"; repFamily "ERV1"; repLeft "-7107"; repStart "-596"; chr4 rmsk exon 171053941 171056189 3618 + . gene_id "MER101_4q34.1a"; transcript_id "MER101_4q34.1a"; locus "MER101_4q34.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0133"; repClass "LTR"; repEnd "4808"; repFamily "ERV1"; repLeft "-1831"; repStart "1322"; ### ERVLE_4q34.1a ### chr4 rmsk gene 171122070 171123620 . + . gene_id "ERVLE_4q34.1a"; transcript_id "ERVLE_4q34.1a"; locus "ERVLE_4q34.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1227"; model_cov "794"; model_pct "14.0"; chr4 rmsk exon 171122070 171122315 493 + . gene_id "ERVLE_4q34.1a"; transcript_id "ERVLE_4q34.1a"; locus "ERVLE_4q34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1227"; repClass "LTR"; repEnd "2910"; repFamily "ERVL"; repLeft "-2757"; repStart "2656"; chr4 rmsk exon 171122611 171122727 493 + . gene_id "ERVLE_4q34.1a"; transcript_id "ERVLE_4q34.1a"; locus "ERVLE_4q34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1227"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "-2635"; repStart "2911"; chr4 rmsk exon 171123208 171123620 640 + . gene_id "ERVLE_4q34.1a"; transcript_id "ERVLE_4q34.1a"; locus "ERVLE_4q34.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1227"; repClass "LTR"; repEnd "3935"; repFamily "ERVL"; repLeft "-1732"; repStart "3516"; ### ERV316A3_4q34.1a ### chr4 rmsk gene 171133932 171138794 . + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0899"; model_cov "4386"; model_pct "83.9"; chr4 rmsk exon 171133932 171134058 416 + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0899"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "302"; chr4 rmsk exon 171134077 171134231 386 + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0899"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-4837"; repStart "231"; chr4 rmsk exon 171134637 171135098 737 + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0899"; repClass "LTR"; repEnd "1368"; repFamily "ERVL"; repLeft "-3858"; repStart "875"; chr4 rmsk exon 171135249 171138314 3130 + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0899"; repClass "LTR"; repEnd "4399"; repFamily "ERVL"; repLeft "-827"; repStart "1140"; chr4 rmsk exon 171138330 171138794 991 + . gene_id "ERV316A3_4q34.1a"; transcript_id "ERV316A3_4q34.1a"; locus "ERV316A3_4q34.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0899"; repClass "LTR"; repEnd "4986"; repFamily "ERVL"; repLeft "-240"; repStart "4510"; ### ERV316A3_4q34.1b ### chr4 rmsk gene 171148853 171153744 . - . gene_id "ERV316A3_4q34.1b"; transcript_id "ERV316A3_4q34.1b"; locus "ERV316A3_4q34.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0900"; model_cov "4486"; model_pct "85.8"; chr4 rmsk exon 171148853 171149063 403 - . gene_id "ERV316A3_4q34.1b"; transcript_id "ERV316A3_4q34.1b"; locus "ERV316A3_4q34.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0900"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "231"; repStart "-13"; chr4 rmsk exon 171149252 171149496 355 - . gene_id "ERV316A3_4q34.1b"; transcript_id "ERV316A3_4q34.1b"; locus "ERV316A3_4q34.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0900"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4977"; repStart "0"; chr4 rmsk exon 171149551 171153744 8946 - . gene_id "ERV316A3_4q34.1b"; transcript_id "ERV316A3_4q34.1b"; locus "ERV316A3_4q34.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0900"; repClass "LTR"; repEnd "4900"; repFamily "ERVL"; repLeft "663"; repStart "-326"; ### ERVLE_4q34.1b ### chr4 rmsk gene 171202312 171203944 . - . gene_id "ERVLE_4q34.1b"; transcript_id "ERVLE_4q34.1b"; locus "ERVLE_4q34.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1228"; model_cov "613"; model_pct "10.8"; chr4 rmsk exon 171202312 171202685 785 - . gene_id "ERVLE_4q34.1b"; transcript_id "ERVLE_4q34.1b"; locus "ERVLE_4q34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1228"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "4195"; repStart "-1064"; chr4 rmsk exon 171203748 171203944 621 - . gene_id "ERVLE_4q34.1b"; transcript_id "ERVLE_4q34.1b"; locus "ERVLE_4q34.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1228"; repClass "LTR"; repEnd "3776"; repFamily "ERVL"; repLeft "3571"; repStart "-1891"; ### ERVLE_4q34.1c ### chr4 rmsk gene 171224326 171226091 . + . gene_id "ERVLE_4q34.1c"; transcript_id "ERVLE_4q34.1c"; locus "ERVLE_4q34.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1229"; model_cov "1183"; model_pct "20.9"; chr4 rmsk exon 171224326 171224883 568 + . gene_id "ERVLE_4q34.1c"; transcript_id "ERVLE_4q34.1c"; locus "ERVLE_4q34.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1229"; repClass "LTR"; repEnd "1469"; repFamily "ERVL"; repLeft "-4198"; repStart "943"; chr4 rmsk exon 171224894 171225150 548 + . gene_id "ERVLE_4q34.1c"; transcript_id "ERVLE_4q34.1c"; locus "ERVLE_4q34.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1229"; repClass "LTR"; repEnd "4343"; repFamily "ERVL"; repLeft "-1324"; repStart "4053"; chr4 rmsk exon 171225551 171225782 386 + . gene_id "ERVLE_4q34.1c"; transcript_id "ERVLE_4q34.1c"; locus "ERVLE_4q34.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1229"; repClass "LTR"; repEnd "5049"; repFamily "ERVL"; repLeft "-618"; repStart "4815"; chr4 rmsk exon 171225958 171226091 328 + . gene_id "ERVLE_4q34.1c"; transcript_id "ERVLE_4q34.1c"; locus "ERVLE_4q34.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1229"; repClass "LTR"; repEnd "5340"; repFamily "ERVL"; repLeft "-327"; repStart "5207"; ### ERVLE_4q34.1d ### chr4 rmsk gene 171407754 171409604 . + . gene_id "ERVLE_4q34.1d"; transcript_id "ERVLE_4q34.1d"; locus "ERVLE_4q34.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1230"; model_cov "1409"; model_pct "24.9"; chr4 rmsk exon 171407754 171408328 914 + . gene_id "ERVLE_4q34.1d"; transcript_id "ERVLE_4q34.1d"; locus "ERVLE_4q34.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1230"; repClass "LTR"; repEnd "3019"; repFamily "ERVL"; repLeft "-2648"; repStart "2435"; chr4 rmsk exon 171408352 171408775 1454 + . gene_id "ERVLE_4q34.1d"; transcript_id "ERVLE_4q34.1d"; locus "ERVLE_4q34.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1230"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "-854"; repStart "4378"; chr4 rmsk exon 171409244 171409604 1454 + . gene_id "ERVLE_4q34.1d"; transcript_id "ERVLE_4q34.1d"; locus "ERVLE_4q34.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1230"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "-463"; repStart "4814"; ### MER34B_4q34.1a ### chr4 rmsk gene 171576668 171577480 . - . gene_id "MER34B_4q34.1a"; transcript_id "MER34B_4q34.1a"; locus "MER34B_4q34.1a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0097"; model_cov "975"; model_pct "18.2"; chr4 rmsk exon 171576668 171577270 891 - . gene_id "MER34B_4q34.1a"; transcript_id "MER34B_4q34.1a"; locus "MER34B_4q34.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0097"; repClass "LTR"; repEnd "5040"; repFamily "ERV1"; repLeft "4211"; repStart "-316"; chr4 rmsk exon 171577334 171577399 322 - . gene_id "MER34B_4q34.1a"; transcript_id "MER34B_4q34.1a"; locus "MER34B_4q34.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0097"; repClass "LTR"; repEnd "4174"; repFamily "ERV1"; repLeft "4109"; repStart "-1182"; chr4 rmsk exon 171577399 171577480 446 - . gene_id "MER34B_4q34.1a"; transcript_id "MER34B_4q34.1a"; locus "MER34B_4q34.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0097"; repClass "LTR"; repEnd "4167"; repFamily "ERV1"; repLeft "4086"; repStart "-1189"; ### MER41_4q34.1a ### chr4 rmsk gene 171578431 171582849 . - . gene_id "MER41_4q34.1a"; transcript_id "MER41_4q34.1a"; locus "MER41_4q34.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0162"; model_cov "6578"; model_pct "100.0"; chr4 rmsk exon 171578431 171582849 11975 - . gene_id "MER41_4q34.1a"; transcript_id "MER41_4q34.1a"; locus "MER41_4q34.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0162"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-633"; repStart "-1"; ### MER34B_4q34.1b ### chr4 rmsk gene 171585448 171587177 . - . gene_id "MER34B_4q34.1b"; transcript_id "MER34B_4q34.1b"; locus "MER34B_4q34.1b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0099"; model_cov "1211"; model_pct "22.6"; chr4 rmsk exon 171585448 171585638 439 - . gene_id "MER34B_4q34.1b"; transcript_id "MER34B_4q34.1b"; locus "MER34B_4q34.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0099"; repClass "LTR"; repEnd "2243"; repFamily "ERV1"; repLeft "2047"; repStart "-3113"; chr4 rmsk exon 171585717 171586398 1481 - . gene_id "MER34B_4q34.1b"; transcript_id "MER34B_4q34.1b"; locus "MER34B_4q34.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0099"; repClass "LTR"; repEnd "1700"; repFamily "ERV1"; repLeft "982"; repStart "-3656"; chr4 rmsk exon 171586531 171586621 299 - . gene_id "MER34B_4q34.1b"; transcript_id "MER34B_4q34.1b"; locus "MER34B_4q34.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0099"; repClass "LTR"; repEnd "-486"; repFamily "ERV1"; repLeft "-577"; repStart "-5842"; chr4 rmsk exon 171586975 171587177 612 - . gene_id "MER34B_4q34.1b"; transcript_id "MER34B_4q34.1b"; locus "MER34B_4q34.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0099"; repClass "LTR"; repEnd "-584"; repFamily "ERV1"; repLeft "-790"; repStart "-5940"; ### ERVLB4_4q34.1 ### chr4 rmsk gene 171667200 171668427 . + . gene_id "ERVLB4_4q34.1"; transcript_id "ERVLB4_4q34.1"; locus "ERVLB4_4q34.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0560"; model_cov "826"; model_pct "14.5"; chr4 rmsk exon 171667200 171667760 394 + . gene_id "ERVLB4_4q34.1"; transcript_id "ERVLB4_4q34.1"; locus "ERVLB4_4q34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0560"; repClass "LTR"; repEnd "1353"; repFamily "ERVL"; repLeft "-4361"; repStart "791"; chr4 rmsk exon 171667890 171668016 333 + . gene_id "ERVLB4_4q34.1"; transcript_id "ERVLB4_4q34.1"; locus "ERVLB4_4q34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0560"; repClass "LTR"; repEnd "1459"; repFamily "ERVL"; repLeft "-4255"; repStart "1333"; chr4 rmsk exon 171668292 171668427 287 + . gene_id "ERVLB4_4q34.1"; transcript_id "ERVLB4_4q34.1"; locus "ERVLB4_4q34.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0560"; repClass "LTR"; repEnd "2037"; repFamily "ERVL"; repLeft "-3677"; repStart "1899"; ### HERVL_4q34.1a ### chr4 rmsk gene 171721074 171722694 . - . gene_id "HERVL_4q34.1a"; transcript_id "HERVL_4q34.1a"; locus "HERVL_4q34.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0451"; model_cov "1382"; model_pct "24.4"; chr4 rmsk exon 171721074 171721308 1610 - . gene_id "HERVL_4q34.1a"; transcript_id "HERVL_4q34.1a"; locus "HERVL_4q34.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0451"; repClass "LTR"; repEnd "250"; repFamily "ERVL"; repLeft "7"; repStart "-194"; chr4 rmsk exon 171721325 171721825 3963 - . gene_id "HERVL_4q34.1a"; transcript_id "HERVL_4q34.1a"; locus "HERVL_4q34.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0451"; repClass "LTR"; repEnd "5624"; repFamily "ERVL"; repLeft "5124"; repStart "-30"; chr4 rmsk exon 171721819 171722694 6702 - . gene_id "HERVL_4q34.1a"; transcript_id "HERVL_4q34.1a"; locus "HERVL_4q34.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0451"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "131"; repStart "-4641"; ### ERV316A3_4q34.1c ### chr4 rmsk gene 171792731 171796675 . - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0901"; model_cov "2710"; model_pct "51.9"; chr4 rmsk exon 171792731 171793143 936 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr4 rmsk exon 171793207 171793427 1254 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "5153"; repFamily "ERVL"; repLeft "4928"; repStart "-73"; chr4 rmsk exon 171793847 171794173 1254 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "4927"; repFamily "ERVL"; repLeft "4574"; repStart "-299"; chr4 rmsk exon 171794252 171794625 527 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "4167"; repFamily "ERVL"; repLeft "3753"; repStart "-1059"; chr4 rmsk exon 171794623 171795540 3058 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "3111"; repStart "-1182"; chr4 rmsk exon 171795845 171796675 3058 - . gene_id "ERV316A3_4q34.1c"; transcript_id "ERV316A3_4q34.1c"; locus "ERV316A3_4q34.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0901"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "2325"; repStart "-2116"; ### MER41_4q34.1b ### chr4 rmsk gene 171960908 171962759 . + . gene_id "MER41_4q34.1b"; transcript_id "MER41_4q34.1b"; locus "MER41_4q34.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0163"; model_cov "1160"; model_pct "19.5"; chr4 rmsk exon 171960908 171961068 1021 + . gene_id "MER41_4q34.1b"; transcript_id "MER41_4q34.1b"; locus "MER41_4q34.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0163"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "475"; chr4 rmsk exon 171961069 171961142 356 + . gene_id "MER41_4q34.1b"; transcript_id "MER41_4q34.1b"; locus "MER41_4q34.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0163"; repClass "LTR"; repEnd "76"; repFamily "ERV1"; repLeft "-5870"; repStart "1"; chr4 rmsk exon 171961163 171962228 6968 + . gene_id "MER41_4q34.1b"; transcript_id "MER41_4q34.1b"; locus "MER41_4q34.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0163"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4861"; chr4 rmsk exon 171962229 171962759 3768 + . gene_id "MER41_4q34.1b"; transcript_id "MER41_4q34.1b"; locus "MER41_4q34.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0163"; repClass "LTR"; repEnd "538"; repFamily "ERV1"; repLeft "-96"; repStart "1"; ### HERVH_4q34.1a ### chr4 rmsk gene 171986106 171990127 . - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0445"; model_cov "3644"; model_pct "47.2"; chr4 rmsk exon 171986106 171986465 2134 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 171986466 171986844 2351 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 171986843 171987061 1355 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr4 rmsk exon 171987063 171987722 4529 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4489"; repStart "-2567"; chr4 rmsk exon 171987726 171988218 3276 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr4 rmsk exon 171988218 171988365 829 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 171988360 171990127 11722 - . gene_id "HERVH_4q34.1a"; transcript_id "HERVH_4q34.1a"; locus "HERVH_4q34.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0445"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1256"; repStart "-4726"; ### MER101_4q34.1b ### chr4 rmsk gene 172122878 172126338 . - . gene_id "MER101_4q34.1b"; transcript_id "MER101_4q34.1b"; locus "MER101_4q34.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0135"; model_cov "3202"; model_pct "48.2"; chr4 rmsk exon 172122878 172123500 2797 - . gene_id "MER101_4q34.1b"; transcript_id "MER101_4q34.1b"; locus "MER101_4q34.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0135"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3996"; repStart "-2037"; chr4 rmsk exon 172123799 172125125 4810 - . gene_id "MER101_4q34.1b"; transcript_id "MER101_4q34.1b"; locus "MER101_4q34.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0135"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "2753"; repStart "-2644"; chr4 rmsk exon 172125261 172125946 2216 - . gene_id "MER101_4q34.1b"; transcript_id "MER101_4q34.1b"; locus "MER101_4q34.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0135"; repClass "LTR"; repEnd "2749"; repFamily "ERV1"; repLeft "1720"; repStart "-3890"; chr4 rmsk exon 172125952 172126338 829 - . gene_id "MER101_4q34.1b"; transcript_id "MER101_4q34.1b"; locus "MER101_4q34.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0135"; repClass "LTR"; repEnd "2819"; repFamily "ERV1"; repLeft "2494"; repStart "-3820"; ### ERVLE_4q34.1e ### chr4 rmsk gene 172741891 172744768 . - . gene_id "ERVLE_4q34.1e"; transcript_id "ERVLE_4q34.1e"; locus "ERVLE_4q34.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1232"; model_cov "2889"; model_pct "51.0"; chr4 rmsk exon 172741891 172742602 1439 - . gene_id "ERVLE_4q34.1e"; transcript_id "ERVLE_4q34.1e"; locus "ERVLE_4q34.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1232"; repClass "LTR"; repEnd "5448"; repFamily "ERVL"; repLeft "4723"; repStart "-219"; chr4 rmsk exon 172742661 172742865 612 - . gene_id "ERVLE_4q34.1e"; transcript_id "ERVLE_4q34.1e"; locus "ERVLE_4q34.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1232"; repClass "LTR"; repEnd "3784"; repFamily "ERVL"; repLeft "3577"; repStart "-1883"; chr4 rmsk exon 172742917 172743686 2446 - . gene_id "ERVLE_4q34.1e"; transcript_id "ERVLE_4q34.1e"; locus "ERVLE_4q34.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1232"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "2613"; repStart "-2267"; chr4 rmsk exon 172743705 172744768 2393 - . gene_id "ERVLE_4q34.1e"; transcript_id "ERVLE_4q34.1e"; locus "ERVLE_4q34.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1232"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "1400"; repStart "-3097"; ### HERVH_4q34.1b ### chr4 rmsk gene 172955660 172962312 . - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0446"; model_cov "5611"; model_pct "72.7"; chr4 rmsk exon 172955660 172956063 2681 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 172956064 172956440 2462 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 172956441 172956635 1161 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 172956637 172958703 7818 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3140"; repStart "-2564"; chr4 rmsk exon 172958683 172961897 15493 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 172961900 172962312 2878 - . gene_id "HERVH_4q34.1b"; transcript_id "HERVH_4q34.1b"; locus "HERVH_4q34.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0446"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q34.1f ### chr4 rmsk gene 173059498 173060497 . - . gene_id "ERVLE_4q34.1f"; transcript_id "ERVLE_4q34.1f"; locus "ERVLE_4q34.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1233"; model_cov "743"; model_pct "13.1"; chr4 rmsk exon 173059498 173059607 325 - . gene_id "ERVLE_4q34.1f"; transcript_id "ERVLE_4q34.1f"; locus "ERVLE_4q34.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1233"; repClass "LTR"; repEnd "5191"; repFamily "ERVL"; repLeft "5083"; repStart "-476"; chr4 rmsk exon 173059742 173059907 432 - . gene_id "ERVLE_4q34.1f"; transcript_id "ERVLE_4q34.1f"; locus "ERVLE_4q34.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1233"; repClass "LTR"; repEnd "4909"; repFamily "ERVL"; repLeft "4734"; repStart "-758"; chr4 rmsk exon 173060024 173060189 534 - . gene_id "ERVLE_4q34.1f"; transcript_id "ERVLE_4q34.1f"; locus "ERVLE_4q34.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1233"; repClass "LTR"; repEnd "4570"; repFamily "ERVL"; repLeft "4394"; repStart "-1097"; chr4 rmsk exon 173060224 173060497 406 - . gene_id "ERVLE_4q34.1f"; transcript_id "ERVLE_4q34.1f"; locus "ERVLE_4q34.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1233"; repClass "LTR"; repEnd "3802"; repFamily "ERVL"; repLeft "3518"; repStart "-1865"; ### HARLEQUIN_4q34.1 ### chr4 rmsk gene 173098691 173106239 . + . gene_id "HARLEQUIN_4q34.1"; transcript_id "HARLEQUIN_4q34.1"; locus "HARLEQUIN_4q34.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0067"; model_cov "6248"; model_pct "90.6"; chr4 rmsk exon 173098691 173099141 3467 + . gene_id "HARLEQUIN_4q34.1"; transcript_id "HARLEQUIN_4q34.1"; locus "HARLEQUIN_4q34.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0067"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 173099533 173100709 8274 + . gene_id "HARLEQUIN_4q34.1"; transcript_id "HARLEQUIN_4q34.1"; locus "HARLEQUIN_4q34.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0067"; repClass "LTR"; repEnd "1421"; repFamily "ERV1"; repLeft "-5475"; repStart "263"; chr4 rmsk exon 173100692 173105782 38449 + . gene_id "HARLEQUIN_4q34.1"; transcript_id "HARLEQUIN_4q34.1"; locus "HARLEQUIN_4q34.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0067"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1806"; chr4 rmsk exon 173105783 173106239 3470 + . gene_id "HARLEQUIN_4q34.1"; transcript_id "HARLEQUIN_4q34.1"; locus "HARLEQUIN_4q34.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0067"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR25_4q34.1a ### chr4 rmsk gene 173282514 173289284 . - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0039"; model_cov "6265"; model_pct "87.2"; chr4 rmsk exon 173282514 173283369 20701 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6248"; repStart "-1"; chr4 rmsk exon 173283658 173287132 20701 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "6247"; repFamily "ERV1"; repLeft "2729"; repStart "-941"; chr4 rmsk exon 173287146 173287317 676 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "2617"; repFamily "ERV1"; repLeft "2446"; repStart "-4571"; chr4 rmsk exon 173287343 173287389 349 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "2311"; repFamily "ERV1"; repLeft "2265"; repStart "-4877"; chr4 rmsk exon 173287422 173288001 6426 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "1765"; repFamily "ERV1"; repLeft "1150"; repStart "-5423"; chr4 rmsk exon 173288311 173289199 6426 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "263"; repStart "-6039"; chr4 rmsk exon 173289204 173289284 431 - . gene_id "LTR25_4q34.1a"; transcript_id "LTR25_4q34.1a"; locus "LTR25_4q34.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0039"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "1"; repStart "-7097"; ### ERVLE_4q34.1g ### chr4 rmsk gene 173756255 173758088 . + . gene_id "ERVLE_4q34.1g"; transcript_id "ERVLE_4q34.1g"; locus "ERVLE_4q34.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1234"; model_cov "1698"; model_pct "30.0"; chr4 rmsk exon 173756255 173756333 934 + . gene_id "ERVLE_4q34.1g"; transcript_id "ERVLE_4q34.1g"; locus "ERVLE_4q34.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1234"; repClass "LTR"; repEnd "2984"; repFamily "ERVL"; repLeft "-2683"; repStart "2915"; chr4 rmsk exon 173756640 173758088 2495 + . gene_id "ERVLE_4q34.1g"; transcript_id "ERVLE_4q34.1g"; locus "ERVLE_4q34.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1234"; repClass "LTR"; repEnd "4505"; repFamily "ERVL"; repLeft "-1162"; repStart "2876"; ### HERVL40_4q34.1b ### chr4 rmsk gene 174188414 174191719 . - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0136"; model_cov "2368"; model_pct "42.8"; chr4 rmsk exon 174188414 174188725 1147 - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0136"; repClass "LTR"; repEnd "5504"; repFamily "ERVL"; repLeft "5277"; repStart "-26"; chr4 rmsk exon 174188939 174189180 456 - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0136"; repClass "LTR"; repEnd "4809"; repFamily "ERVL"; repLeft "4584"; repStart "-721"; chr4 rmsk exon 174189309 174189649 4685 - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0136"; repClass "LTR"; repEnd "3955"; repFamily "ERVL"; repLeft "3554"; repStart "-1575"; chr4 rmsk exon 174190104 174191594 4685 - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0136"; repClass "LTR"; repEnd "3553"; repFamily "ERVL"; repLeft "2038"; repStart "-1977"; chr4 rmsk exon 174191653 174191719 289 - . gene_id "HERVL40_4q34.1b"; transcript_id "HERVL40_4q34.1b"; locus "HERVL40_4q34.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0136"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "150"; repStart "-302"; ### MER4_4q34.1a ### chr4 rmsk gene 174366422 174369783 . + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0262"; model_cov "2592"; model_pct "39.3"; chr4 rmsk exon 174366422 174366555 938 + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0262"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "339"; chr4 rmsk exon 174366560 174367126 2757 + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0262"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "2"; chr4 rmsk exon 174367173 174368317 10776 + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0262"; repClass "LTR"; repEnd "5875"; repFamily "ERV1"; repLeft "-723"; repStart "4687"; chr4 rmsk exon 174368636 174369345 10776 + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0262"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5876"; chr4 rmsk exon 174369355 174369783 2715 + . gene_id "MER4_4q34.1a"; transcript_id "MER4_4q34.1a"; locus "MER4_4q34.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0262"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4q34.1b ### chr4 rmsk gene 174605846 174609195 . + . gene_id "MER4_4q34.1b"; transcript_id "MER4_4q34.1b"; locus "MER4_4q34.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0263"; model_cov "2727"; model_pct "41.3"; chr4 rmsk exon 174605846 174606293 3304 + . gene_id "MER4_4q34.1b"; transcript_id "MER4_4q34.1b"; locus "MER4_4q34.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0263"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 174606297 174608773 10763 + . gene_id "MER4_4q34.1b"; transcript_id "MER4_4q34.1b"; locus "MER4_4q34.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0263"; repClass "LTR"; repEnd "2521"; repFamily "ERV1"; repLeft "-4077"; repStart "1"; chr4 rmsk exon 174608990 174609195 1306 + . gene_id "MER4_4q34.1b"; transcript_id "MER4_4q34.1b"; locus "MER4_4q34.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0263"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-2946"; repStart "3445"; ### MER4_4q34.1c ### chr4 rmsk gene 174609218 174611108 . + . gene_id "MER4_4q34.1c"; transcript_id "MER4_4q34.1c"; locus "MER4_4q34.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0264"; model_cov "1601"; model_pct "24.3"; chr4 rmsk exon 174609218 174609547 1410 + . gene_id "MER4_4q34.1c"; transcript_id "MER4_4q34.1c"; locus "MER4_4q34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0264"; repClass "LTR"; repEnd "3622"; repFamily "ERV1"; repLeft "-2976"; repStart "3297"; chr4 rmsk exon 174609862 174609925 1410 + . gene_id "MER4_4q34.1c"; transcript_id "MER4_4q34.1c"; locus "MER4_4q34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0264"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "3623"; chr4 rmsk exon 174609920 174611108 7169 + . gene_id "MER4_4q34.1c"; transcript_id "MER4_4q34.1c"; locus "MER4_4q34.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0264"; repClass "LTR"; repEnd "5050"; repFamily "ERV1"; repLeft "-1548"; repStart "3837"; ### MER41_4q34.1c ### chr4 rmsk gene 174611635 174612297 . + . gene_id "MER41_4q34.1c"; transcript_id "MER41_4q34.1c"; locus "MER41_4q34.1c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0164"; model_cov "672"; model_pct "11.3"; chr4 rmsk exon 174611635 174612297 4725 + . gene_id "MER41_4q34.1c"; transcript_id "MER41_4q34.1c"; locus "MER41_4q34.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0164"; repClass "LTR"; repEnd "5058"; repFamily "ERV1"; repLeft "-888"; repStart "4386"; ### ERVLE_4q34.1h ### chr4 rmsk gene 174749466 174750717 . + . gene_id "ERVLE_4q34.1h"; transcript_id "ERVLE_4q34.1h"; locus "ERVLE_4q34.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1235"; model_cov "1229"; model_pct "21.7"; chr4 rmsk exon 174749466 174750006 691 + . gene_id "ERVLE_4q34.1h"; transcript_id "ERVLE_4q34.1h"; locus "ERVLE_4q34.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1235"; repClass "LTR"; repEnd "669"; repFamily "ERVL"; repLeft "-4998"; repStart "116"; chr4 rmsk exon 174750131 174750717 706 + . gene_id "ERVLE_4q34.1h"; transcript_id "ERVLE_4q34.1h"; locus "ERVLE_4q34.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1235"; repClass "LTR"; repEnd "1492"; repFamily "ERVL"; repLeft "-4175"; repStart "816"; ### HERVL40_4q34.1c ### chr4 rmsk gene 174863637 174866852 . + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0137"; model_cov "2238"; model_pct "40.5"; chr4 rmsk exon 174863637 174863956 879 + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0137"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-3"; repStart "193"; chr4 rmsk exon 174864169 174864822 1305 + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0137"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-3922"; repStart "917"; chr4 rmsk exon 174864823 174864897 2801 + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0137"; repClass "LTR"; repEnd "2599"; repFamily "ERVL"; repLeft "-2931"; repStart "2520"; chr4 rmsk exon 174865389 174866182 2801 + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0137"; repClass "LTR"; repEnd "3411"; repFamily "ERVL"; repLeft "-2119"; repStart "2600"; chr4 rmsk exon 174866200 174866852 2407 + . gene_id "HERVL40_4q34.1c"; transcript_id "HERVL40_4q34.1c"; locus "HERVL40_4q34.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0137"; repClass "LTR"; repEnd "4542"; repFamily "ERVL"; repLeft "-988"; repStart "3885"; ### HERVL_4q34.1b ### chr4 rmsk gene 174874958 174876690 . - . gene_id "HERVL_4q34.1b"; transcript_id "HERVL_4q34.1b"; locus "HERVL_4q34.1b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0452"; model_cov "1309"; model_pct "23.2"; chr4 rmsk exon 174874958 174875534 1094 - . gene_id "HERVL_4q34.1b"; transcript_id "HERVL_4q34.1b"; locus "HERVL_4q34.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0452"; repClass "LTR"; repEnd "3787"; repFamily "ERVL"; repLeft "3177"; repStart "-1867"; chr4 rmsk exon 174875871 174876042 525 - . gene_id "HERVL_4q34.1b"; transcript_id "HERVL_4q34.1b"; locus "HERVL_4q34.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0452"; repClass "LTR"; repEnd "3112"; repFamily "ERVL"; repLeft "2788"; repStart "-2542"; chr4 rmsk exon 174876047 174876149 788 - . gene_id "HERVL_4q34.1b"; transcript_id "HERVL_4q34.1b"; locus "HERVL_4q34.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0452"; repClass "LTR"; repEnd "2821"; repFamily "ERVL"; repLeft "2719"; repStart "-2833"; chr4 rmsk exon 174876429 174876690 812 - . gene_id "HERVL_4q34.1b"; transcript_id "HERVL_4q34.1b"; locus "HERVL_4q34.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0452"; repClass "LTR"; repEnd "2718"; repFamily "ERVL"; repLeft "2445"; repStart "-2936"; ### HERVL_4q34.1c ### chr4 rmsk gene 174979197 174982832 . - . gene_id "HERVL_4q34.1c"; transcript_id "HERVL_4q34.1c"; locus "HERVL_4q34.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0454"; model_cov "3152"; model_pct "55.7"; chr4 rmsk exon 174979197 174979268 3032 - . gene_id "HERVL_4q34.1c"; transcript_id "HERVL_4q34.1c"; locus "HERVL_4q34.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0454"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr4 rmsk exon 174979310 174979694 3032 - . gene_id "HERVL_4q34.1c"; transcript_id "HERVL_4q34.1c"; locus "HERVL_4q34.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0454"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr4 rmsk exon 174979695 174982832 24357 - . gene_id "HERVL_4q34.1c"; transcript_id "HERVL_4q34.1c"; locus "HERVL_4q34.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0454"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2502"; repStart "0"; ### HML3_4q34.1a ### chr4 rmsk gene 174982833 174989048 . - . gene_id "HML3_4q34.1a"; transcript_id "HML3_4q34.1a"; locus "HML3_4q34.1a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0079"; model_cov "4647"; model_pct "77.2"; chr4 rmsk exon 174982833 174983331 3765 - . gene_id "HML3_4q34.1a"; transcript_id "HML3_4q34.1a"; locus "HML3_4q34.1a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0079"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 174983332 174983864 1982 - . gene_id "HML3_4q34.1a"; transcript_id "HML3_4q34.1a"; locus "HML3_4q34.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0079"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5682"; repStart "0"; chr4 rmsk exon 174984523 174984831 807 - . gene_id "HML3_4q34.1a"; transcript_id "HML3_4q34.1a"; locus "HML3_4q34.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0079"; repClass "LTR"; repEnd "5490"; repFamily "ERVK"; repLeft "5185"; repStart "-531"; chr4 rmsk exon 174984913 174989048 35073 - . gene_id "HML3_4q34.1a"; transcript_id "HML3_4q34.1a"; locus "HML3_4q34.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0079"; repClass "LTR"; repEnd "4972"; repFamily "ERVK"; repLeft "969"; repStart "-1049"; ### HML3_4q34.1b ### chr4 rmsk gene 174989106 174990600 . - . gene_id "HML3_4q34.1b"; transcript_id "HML3_4q34.1b"; locus "HML3_4q34.1b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0080"; model_cov "967"; model_pct "16.1"; chr4 rmsk exon 174989106 174990103 35073 - . gene_id "HML3_4q34.1b"; transcript_id "HML3_4q34.1b"; locus "HML3_4q34.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0080"; repClass "LTR"; repEnd "4972"; repFamily "ERVK"; repLeft "4005"; repStart "-1049"; chr4 rmsk exon 174990104 174990600 3813 - . gene_id "HML3_4q34.1b"; transcript_id "HML3_4q34.1b"; locus "HML3_4q34.1b"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0080"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_4q34.1d ### chr4 rmsk gene 174990601 174993529 . - . gene_id "HERVL_4q34.1d"; transcript_id "HERVL_4q34.1d"; locus "HERVL_4q34.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0455"; model_cov "2502"; model_pct "44.3"; chr4 rmsk exon 174990601 174993031 15791 - . gene_id "HERVL_4q34.1d"; transcript_id "HERVL_4q34.1d"; locus "HERVL_4q34.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0455"; repClass "LTR"; repEnd "2507"; repFamily "ERVL"; repLeft "5"; repStart "-3147"; chr4 rmsk exon 174993036 174993529 2942 - . gene_id "HERVL_4q34.1d"; transcript_id "HERVL_4q34.1d"; locus "HERVL_4q34.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0455"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### LTR25_4q34.1b ### chr4 rmsk gene 175213921 175216500 . + . gene_id "LTR25_4q34.1b"; transcript_id "LTR25_4q34.1b"; locus "LTR25_4q34.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0040"; model_cov "2091"; model_pct "29.1"; chr4 rmsk exon 175213921 175215193 4767 + . gene_id "LTR25_4q34.1b"; transcript_id "LTR25_4q34.1b"; locus "LTR25_4q34.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0040"; repClass "LTR"; repEnd "1308"; repFamily "ERV1"; repLeft "-5880"; repStart "28"; chr4 rmsk exon 175215689 175215900 4767 + . gene_id "LTR25_4q34.1b"; transcript_id "LTR25_4q34.1b"; locus "LTR25_4q34.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0040"; repClass "LTR"; repEnd "1515"; repFamily "ERV1"; repLeft "-5673"; repStart "1309"; chr4 rmsk exon 175215899 175216500 3048 + . gene_id "LTR25_4q34.1b"; transcript_id "LTR25_4q34.1b"; locus "LTR25_4q34.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0040"; repClass "LTR"; repEnd "1389"; repFamily "ERV1"; repLeft "-5799"; repStart "784"; ### HUERSP2_4q34.1 ### chr4 rmsk gene 175252128 175255566 . + . gene_id "HUERSP2_4q34.1"; transcript_id "HUERSP2_4q34.1"; locus "HUERSP2_4q34.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0049"; model_cov "2461"; model_pct "79.7"; chr4 rmsk exon 175252128 175252920 4888 + . gene_id "HUERSP2_4q34.1"; transcript_id "HUERSP2_4q34.1"; locus "HUERSP2_4q34.1"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0049"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 175253065 175255255 7937 + . gene_id "HUERSP2_4q34.1"; transcript_id "HUERSP2_4q34.1"; locus "HUERSP2_4q34.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0049"; repClass "LTR"; repEnd "-1338"; repFamily "ERV1"; repLeft "-4426"; repStart "-3799"; chr4 rmsk exon 175255257 175255566 2004 + . gene_id "HUERSP2_4q34.1"; transcript_id "HUERSP2_4q34.1"; locus "HUERSP2_4q34.1"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0049"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "0"; repStart "479"; ### ERVLE_4q34.2a ### chr4 rmsk gene 175406987 175410855 . + . gene_id "ERVLE_4q34.2a"; transcript_id "ERVLE_4q34.2a"; locus "ERVLE_4q34.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1239"; model_cov "3889"; model_pct "68.6"; chr4 rmsk exon 175406987 175407326 1108 + . gene_id "ERVLE_4q34.2a"; transcript_id "ERVLE_4q34.2a"; locus "ERVLE_4q34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1239"; repClass "LTR"; repEnd "1332"; repFamily "ERVL"; repLeft "-4335"; repStart "882"; chr4 rmsk exon 175407315 175407475 615 + . gene_id "ERVLE_4q34.2a"; transcript_id "ERVLE_4q34.2a"; locus "ERVLE_4q34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1239"; repClass "LTR"; repEnd "1923"; repFamily "ERVL"; repLeft "-3744"; repStart "1747"; chr4 rmsk exon 175407499 175409001 3998 + . gene_id "ERVLE_4q34.2a"; transcript_id "ERVLE_4q34.2a"; locus "ERVLE_4q34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1239"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "-2104"; repStart "1973"; chr4 rmsk exon 175409305 175410855 4131 + . gene_id "ERVLE_4q34.2a"; transcript_id "ERVLE_4q34.2a"; locus "ERVLE_4q34.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1239"; repClass "LTR"; repEnd "5237"; repFamily "ERVL"; repLeft "-430"; repStart "3564"; ### PRIMA41_4q34.2 ### chr4 rmsk gene 175444248 175456817 . - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; category "tandem*"; intModel "PRIMA41-int"; locid "PRIMA41-int_0055"; model_cov "4984"; model_pct "64.3"; chr4 rmsk exon 175444248 175444783 3684 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 175444784 175446571 13113 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "6337"; repFamily "ERV1"; repLeft "4948"; repStart "-1419"; chr4 rmsk exon 175446855 175447411 13113 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "4947"; repFamily "ERV1"; repLeft "4405"; repStart "-2809"; chr4 rmsk exon 175447416 175447812 16736 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "2636"; repStart "-4701"; chr4 rmsk exon 175448513 175451120 16736 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "2635"; repFamily "ERV1"; repLeft "1"; repStart "-5121"; chr4 rmsk exon 175451293 175451834 3656 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 175451835 175453020 6983 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "7191"; repFamily "ERV1"; repLeft "6015"; repStart "-565"; chr4 rmsk exon 175453026 175453150 584 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "5479"; repFamily "ERV1"; repLeft "5353"; repStart "-2277"; chr4 rmsk exon 175453209 175453420 4419 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "5179"; repFamily "ERV1"; repLeft "4989"; repStart "-2577"; chr4 rmsk exon 175454100 175454649 4419 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "4988"; repFamily "ERV1"; repLeft "4431"; repStart "-2768"; chr4 rmsk exon 175454652 175455086 2161 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "4086"; repFamily "ERV1"; repLeft "3670"; repStart "-3670"; chr4 rmsk exon 175455607 175456817 6400 - . gene_id "PRIMA41_4q34.2"; transcript_id "PRIMA41_4q34.2"; locus "PRIMA41_4q34.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0055"; repClass "LTR"; repEnd "2389"; repFamily "ERV1"; repLeft "1200"; repStart "-5367"; ### HERVH_4q34.2a ### chr4 rmsk gene 175461167 175467186 . - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0447"; model_cov "5149"; model_pct "66.8"; chr4 rmsk exon 175461167 175461615 3376 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 175461616 175461995 2473 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 175461996 175462213 1288 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 175462215 175462876 4217 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr4 rmsk exon 175462880 175463552 4642 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3321"; repStart "-3720"; chr4 rmsk exon 175463553 175463775 1407 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "3363"; repFamily "ERV1"; repLeft "3140"; repStart "-4350"; chr4 rmsk exon 175463770 175466680 18464 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 175466683 175467186 3196 - . gene_id "HERVH_4q34.2a"; transcript_id "HERVH_4q34.2a"; locus "HERVH_4q34.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0447"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_4q34.2 ### chr4 rmsk gene 176283103 176287051 . - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0139"; model_cov "2024"; model_pct "36.6"; chr4 rmsk exon 176283103 176283636 1637 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr4 rmsk exon 176283640 176283889 1081 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "5277"; repStart "-1"; chr4 rmsk exon 176284188 176284439 420 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "5244"; repFamily "ERVL"; repLeft "4981"; repStart "-286"; chr4 rmsk exon 176284750 176285055 2394 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "4341"; repStart "-991"; chr4 rmsk exon 176285447 176286004 2394 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "4340"; repFamily "ERVL"; repLeft "3764"; repStart "-1190"; chr4 rmsk exon 176286347 176287051 2153 - . gene_id "HERVL40_4q34.2"; transcript_id "HERVL40_4q34.2"; locus "HERVL40_4q34.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0139"; repClass "LTR"; repEnd "3748"; repFamily "ERVL"; repLeft "3013"; repStart "-1782"; ### HERVH_4q34.2b ### chr4 rmsk gene 176294237 176300348 . - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0448"; model_cov "5603"; model_pct "72.6"; chr4 rmsk exon 176294237 176294640 2381 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 176294641 176295801 7865 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr4 rmsk exon 176295775 176296355 3765 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr4 rmsk exon 176296352 176296538 1091 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4490"; repStart "-3046"; chr4 rmsk exon 176296541 176297037 3197 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "3500"; repStart "-3718"; chr4 rmsk exon 176297037 176297185 861 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr4 rmsk exon 176297180 176299998 13441 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 176300001 176300348 1880 - . gene_id "HERVH_4q34.2b"; transcript_id "HERVH_4q34.2b"; locus "HERVH_4q34.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0448"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML3_4q34.2 ### chr4 rmsk gene 176343740 176350769 . + . gene_id "HML3_4q34.2"; transcript_id "HML3_4q34.2"; locus "HML3_4q34.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0081"; model_cov "6020"; model_pct "100.0"; chr4 rmsk exon 176343740 176344246 3876 + . gene_id "HML3_4q34.2"; transcript_id "HML3_4q34.2"; locus "HML3_4q34.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0081"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 176344247 176350257 48005 + . gene_id "HML3_4q34.2"; transcript_id "HML3_4q34.2"; locus "HML3_4q34.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0081"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 176350258 176350769 4202 + . gene_id "HML3_4q34.2"; transcript_id "HML3_4q34.2"; locus "HML3_4q34.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0081"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_4q34.2a ### chr4 rmsk gene 176351121 176355582 . - . gene_id "MER4_4q34.2a"; transcript_id "MER4_4q34.2a"; locus "MER4_4q34.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0265"; model_cov "3780"; model_pct "57.3"; chr4 rmsk exon 176351121 176351591 3328 - . gene_id "MER4_4q34.2a"; transcript_id "MER4_4q34.2a"; locus "MER4_4q34.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0265"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 176351596 176354362 15512 - . gene_id "MER4_4q34.2a"; transcript_id "MER4_4q34.2a"; locus "MER4_4q34.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0265"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3815"; repStart "-2"; chr4 rmsk exon 176354361 176354624 8954 - . gene_id "MER4_4q34.2a"; transcript_id "MER4_4q34.2a"; locus "MER4_4q34.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0265"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "3433"; repStart "-2922"; chr4 rmsk exon 176354927 176355582 8954 - . gene_id "MER4_4q34.2a"; transcript_id "MER4_4q34.2a"; locus "MER4_4q34.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0265"; repClass "LTR"; repEnd "3432"; repFamily "ERV1"; repLeft "2676"; repStart "-3166"; ### MER4_4q34.2b ### chr4 rmsk gene 176355827 176359240 . - . gene_id "MER4_4q34.2b"; transcript_id "MER4_4q34.2b"; locus "MER4_4q34.2b"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0266"; model_cov "2683"; model_pct "40.7"; chr4 rmsk exon 176355827 176357291 8954 - . gene_id "MER4_4q34.2b"; transcript_id "MER4_4q34.2b"; locus "MER4_4q34.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0266"; repClass "LTR"; repEnd "3432"; repFamily "ERV1"; repLeft "1740"; repStart "-3166"; chr4 rmsk exon 176357293 176357814 3201 - . gene_id "MER4_4q34.2b"; transcript_id "MER4_4q34.2b"; locus "MER4_4q34.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0266"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "-81"; repStart "-7"; chr4 rmsk exon 176357816 176358762 4271 - . gene_id "MER4_4q34.2b"; transcript_id "MER4_4q34.2b"; locus "MER4_4q34.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0266"; repClass "LTR"; repEnd "992"; repFamily "ERV1"; repLeft "1"; repStart "-5606"; chr4 rmsk exon 176358766 176359240 3366 - . gene_id "MER4_4q34.2b"; transcript_id "MER4_4q34.2b"; locus "MER4_4q34.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0266"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4q34.2b ### chr4 rmsk gene 176532525 176535531 . + . gene_id "ERVLE_4q34.2b"; transcript_id "ERVLE_4q34.2b"; locus "ERVLE_4q34.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1241"; model_cov "1513"; model_pct "26.7"; chr4 rmsk exon 176532525 176533059 447 + . gene_id "ERVLE_4q34.2b"; transcript_id "ERVLE_4q34.2b"; locus "ERVLE_4q34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1241"; repClass "LTR"; repEnd "916"; repFamily "ERVL"; repLeft "-4751"; repStart "374"; chr4 rmsk exon 176533134 176533802 1464 + . gene_id "ERVLE_4q34.2b"; transcript_id "ERVLE_4q34.2b"; locus "ERVLE_4q34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1241"; repClass "LTR"; repEnd "1690"; repFamily "ERVL"; repLeft "-3977"; repStart "1006"; chr4 rmsk exon 176535250 176535531 648 + . gene_id "ERVLE_4q34.2b"; transcript_id "ERVLE_4q34.2b"; locus "ERVLE_4q34.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1241"; repClass "LTR"; repEnd "2595"; repFamily "ERVL"; repLeft "-3072"; repStart "2308"; ### ERV316A3_4q34.2 ### chr4 rmsk gene 176536444 176537836 . - . gene_id "ERV316A3_4q34.2"; transcript_id "ERV316A3_4q34.2"; locus "ERV316A3_4q34.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0905"; model_cov "1177"; model_pct "22.5"; chr4 rmsk exon 176536444 176536720 798 - . gene_id "ERV316A3_4q34.2"; transcript_id "ERV316A3_4q34.2"; locus "ERV316A3_4q34.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0905"; repClass "LTR"; repEnd "4631"; repFamily "ERVL"; repLeft "4383"; repStart "-595"; chr4 rmsk exon 176536762 176537435 1364 - . gene_id "ERV316A3_4q34.2"; transcript_id "ERV316A3_4q34.2"; locus "ERV316A3_4q34.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0905"; repClass "LTR"; repEnd "2858"; repFamily "ERVL"; repLeft "2172"; repStart "-2368"; chr4 rmsk exon 176537548 176537612 1364 - . gene_id "ERV316A3_4q34.2"; transcript_id "ERV316A3_4q34.2"; locus "ERV316A3_4q34.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0905"; repClass "LTR"; repEnd "2171"; repFamily "ERVL"; repLeft "2102"; repStart "-3055"; chr4 rmsk exon 176537640 176537836 316 - . gene_id "ERV316A3_4q34.2"; transcript_id "ERV316A3_4q34.2"; locus "ERV316A3_4q34.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0905"; repClass "LTR"; repEnd "2032"; repFamily "ERVL"; repLeft "1858"; repStart "-3194"; ### ERVLE_4q34.2c ### chr4 rmsk gene 176592712 176595670 . + . gene_id "ERVLE_4q34.2c"; transcript_id "ERVLE_4q34.2c"; locus "ERVLE_4q34.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1242"; model_cov "1327"; model_pct "23.4"; chr4 rmsk exon 176592712 176592942 370 + . gene_id "ERVLE_4q34.2c"; transcript_id "ERVLE_4q34.2c"; locus "ERVLE_4q34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1242"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "-5120"; repStart "312"; chr4 rmsk exon 176593323 176593739 590 + . gene_id "ERVLE_4q34.2c"; transcript_id "ERVLE_4q34.2c"; locus "ERVLE_4q34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1242"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "-4260"; repStart "993"; chr4 rmsk exon 176594116 176594440 590 + . gene_id "ERVLE_4q34.2c"; transcript_id "ERVLE_4q34.2c"; locus "ERVLE_4q34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1242"; repClass "LTR"; repEnd "1751"; repFamily "ERVL"; repLeft "-3916"; repStart "1355"; chr4 rmsk exon 176595389 176595670 575 + . gene_id "ERVLE_4q34.2c"; transcript_id "ERVLE_4q34.2c"; locus "ERVLE_4q34.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1242"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "-2909"; repStart "2476"; ### ERVLE_4q34.3a ### chr4 rmsk gene 176931105 176932838 . - . gene_id "ERVLE_4q34.3a"; transcript_id "ERVLE_4q34.3a"; locus "ERVLE_4q34.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1244"; model_cov "1136"; model_pct "20.0"; chr4 rmsk exon 176931105 176931263 3576 - . gene_id "ERVLE_4q34.3a"; transcript_id "ERVLE_4q34.3a"; locus "ERVLE_4q34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1244"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5524"; repStart "0"; chr4 rmsk exon 176931577 176932160 3576 - . gene_id "ERVLE_4q34.3a"; transcript_id "ERVLE_4q34.3a"; locus "ERVLE_4q34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1244"; repClass "LTR"; repEnd "5523"; repFamily "ERVL"; repLeft "4917"; repStart "-144"; chr4 rmsk exon 176932475 176932838 3576 - . gene_id "ERVLE_4q34.3a"; transcript_id "ERVLE_4q34.3a"; locus "ERVLE_4q34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1244"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "4529"; repStart "-751"; ### HERVL40_4q34.3 ### chr4 rmsk gene 176969913 176972743 . + . gene_id "HERVL40_4q34.3"; transcript_id "HERVL40_4q34.3"; locus "HERVL40_4q34.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0140"; model_cov "1770"; model_pct "32.0"; chr4 rmsk exon 176969913 176970081 521 + . gene_id "HERVL40_4q34.3"; transcript_id "HERVL40_4q34.3"; locus "HERVL40_4q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0140"; repClass "LTR"; repEnd "1509"; repFamily "ERVL"; repLeft "-4021"; repStart "1329"; chr4 rmsk exon 176970179 176971444 3249 + . gene_id "HERVL40_4q34.3"; transcript_id "HERVL40_4q34.3"; locus "HERVL40_4q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0140"; repClass "LTR"; repEnd "3360"; repFamily "ERVL"; repLeft "-2170"; repStart "2054"; chr4 rmsk exon 176971964 176972302 1235 + . gene_id "HERVL40_4q34.3"; transcript_id "HERVL40_4q34.3"; locus "HERVL40_4q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0140"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5246"; chr4 rmsk exon 176972303 176972743 1577 + . gene_id "HERVL40_4q34.3"; transcript_id "HERVL40_4q34.3"; locus "HERVL40_4q34.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0140"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_4q34.3b ### chr4 rmsk gene 176992722 176996113 . - . gene_id "ERVLE_4q34.3b"; transcript_id "ERVLE_4q34.3b"; locus "ERVLE_4q34.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1245"; model_cov "2087"; model_pct "36.8"; chr4 rmsk exon 176992722 176993262 847 - . gene_id "ERVLE_4q34.3b"; transcript_id "ERVLE_4q34.3b"; locus "ERVLE_4q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1245"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "2713"; repStart "-2412"; chr4 rmsk exon 176993269 176994219 759 - . gene_id "ERVLE_4q34.3b"; transcript_id "ERVLE_4q34.3b"; locus "ERVLE_4q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1245"; repClass "LTR"; repEnd "3012"; repFamily "ERVL"; repLeft "2038"; repStart "-2655"; chr4 rmsk exon 176995160 176995513 717 - . gene_id "ERVLE_4q34.3b"; transcript_id "ERVLE_4q34.3b"; locus "ERVLE_4q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1245"; repClass "LTR"; repEnd "1527"; repFamily "ERVL"; repLeft "1153"; repStart "-4140"; chr4 rmsk exon 176995919 176996113 312 - . gene_id "ERVLE_4q34.3b"; transcript_id "ERVLE_4q34.3b"; locus "ERVLE_4q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1245"; repClass "LTR"; repEnd "870"; repFamily "ERVL"; repLeft "673"; repStart "-4797"; ### ERVLE_4q34.3c ### chr4 rmsk gene 177050454 177051067 . - . gene_id "ERVLE_4q34.3c"; transcript_id "ERVLE_4q34.3c"; locus "ERVLE_4q34.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1246"; model_cov "598"; model_pct "10.6"; chr4 rmsk exon 177050454 177051067 937 - . gene_id "ERVLE_4q34.3c"; transcript_id "ERVLE_4q34.3c"; locus "ERVLE_4q34.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1246"; repClass "LTR"; repEnd "2173"; repFamily "ERVL"; repLeft "1575"; repStart "-3494"; ### ERVLE_4q34.3d ### chr4 rmsk gene 177051202 177052156 . + . gene_id "ERVLE_4q34.3d"; transcript_id "ERVLE_4q34.3d"; locus "ERVLE_4q34.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1247"; model_cov "948"; model_pct "16.7"; chr4 rmsk exon 177051202 177051692 603 + . gene_id "ERVLE_4q34.3d"; transcript_id "ERVLE_4q34.3d"; locus "ERVLE_4q34.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1247"; repClass "LTR"; repEnd "3981"; repFamily "ERVL"; repLeft "-1686"; repStart "3477"; chr4 rmsk exon 177051700 177051982 519 + . gene_id "ERVLE_4q34.3d"; transcript_id "ERVLE_4q34.3d"; locus "ERVLE_4q34.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1247"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-1222"; repStart "4173"; chr4 rmsk exon 177051984 177052156 518 + . gene_id "ERVLE_4q34.3d"; transcript_id "ERVLE_4q34.3d"; locus "ERVLE_4q34.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1247"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "-753"; repStart "4742"; ### ERV316A3_4q34.3a ### chr4 rmsk gene 177107467 177110159 . + . gene_id "ERV316A3_4q34.3a"; transcript_id "ERV316A3_4q34.3a"; locus "ERV316A3_4q34.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0906"; model_cov "1622"; model_pct "31.0"; chr4 rmsk exon 177107467 177107682 473 + . gene_id "ERV316A3_4q34.3a"; transcript_id "ERV316A3_4q34.3a"; locus "ERV316A3_4q34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0906"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-4753"; repStart "250"; chr4 rmsk exon 177108815 177110159 1445 + . gene_id "ERV316A3_4q34.3a"; transcript_id "ERV316A3_4q34.3a"; locus "ERV316A3_4q34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0906"; repClass "LTR"; repEnd "1873"; repFamily "ERVL"; repLeft "-3353"; repStart "474"; ### ERVLE_4q34.3e ### chr4 rmsk gene 177260470 177263635 . + . gene_id "ERVLE_4q34.3e"; transcript_id "ERVLE_4q34.3e"; locus "ERVLE_4q34.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1248"; model_cov "896"; model_pct "15.8"; chr4 rmsk exon 177260470 177260763 352 + . gene_id "ERVLE_4q34.3e"; transcript_id "ERVLE_4q34.3e"; locus "ERVLE_4q34.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1248"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-5316"; repStart "38"; chr4 rmsk exon 177263079 177263635 1131 + . gene_id "ERVLE_4q34.3e"; transcript_id "ERVLE_4q34.3e"; locus "ERVLE_4q34.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1248"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "-3776"; repStart "1308"; ### ERVLE_4q34.3f ### chr4 rmsk gene 177487524 177490452 . - . gene_id "ERVLE_4q34.3f"; transcript_id "ERVLE_4q34.3f"; locus "ERVLE_4q34.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1249"; model_cov "2255"; model_pct "39.8"; chr4 rmsk exon 177487524 177487616 255 - . gene_id "ERVLE_4q34.3f"; transcript_id "ERVLE_4q34.3f"; locus "ERVLE_4q34.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1249"; repClass "LTR"; repEnd "5214"; repFamily "ERVL"; repLeft "5119"; repStart "-453"; chr4 rmsk exon 177488365 177488564 436 - . gene_id "ERVLE_4q34.3f"; transcript_id "ERVLE_4q34.3f"; locus "ERVLE_4q34.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1249"; repClass "LTR"; repEnd "4798"; repFamily "ERVL"; repLeft "4587"; repStart "-869"; chr4 rmsk exon 177488578 177490143 2235 - . gene_id "ERVLE_4q34.3f"; transcript_id "ERVLE_4q34.3f"; locus "ERVLE_4q34.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1249"; repClass "LTR"; repEnd "3698"; repFamily "ERVL"; repLeft "2045"; repStart "-1969"; chr4 rmsk exon 177490177 177490452 496 - . gene_id "ERVLE_4q34.3f"; transcript_id "ERVLE_4q34.3f"; locus "ERVLE_4q34.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1249"; repClass "LTR"; repEnd "1970"; repFamily "ERVL"; repLeft "1674"; repStart "-3697"; ### ERVLE_4q34.3g ### chr4 rmsk gene 177708891 177710425 . - . gene_id "ERVLE_4q34.3g"; transcript_id "ERVLE_4q34.3g"; locus "ERVLE_4q34.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1250"; model_cov "748"; model_pct "13.2"; chr4 rmsk exon 177708891 177709041 605 - . gene_id "ERVLE_4q34.3g"; transcript_id "ERVLE_4q34.3g"; locus "ERVLE_4q34.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1250"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "5122"; repStart "-404"; chr4 rmsk exon 177709340 177709706 605 - . gene_id "ERVLE_4q34.3g"; transcript_id "ERVLE_4q34.3g"; locus "ERVLE_4q34.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1250"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "4752"; repStart "-546"; chr4 rmsk exon 177710191 177710425 451 - . gene_id "ERVLE_4q34.3g"; transcript_id "ERVLE_4q34.3g"; locus "ERVLE_4q34.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1250"; repClass "LTR"; repEnd "4759"; repFamily "ERVL"; repLeft "4521"; repStart "-908"; ### ERVLE_4q34.3h ### chr4 rmsk gene 177713313 177716081 . - . gene_id "ERVLE_4q34.3h"; transcript_id "ERVLE_4q34.3h"; locus "ERVLE_4q34.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1251"; model_cov "2561"; model_pct "45.2"; chr4 rmsk exon 177713313 177714445 3918 - . gene_id "ERVLE_4q34.3h"; transcript_id "ERVLE_4q34.3h"; locus "ERVLE_4q34.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1251"; repClass "LTR"; repEnd "4501"; repFamily "ERVL"; repLeft "3351"; repStart "-1166"; chr4 rmsk exon 177714736 177715506 3918 - . gene_id "ERVLE_4q34.3h"; transcript_id "ERVLE_4q34.3h"; locus "ERVLE_4q34.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1251"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "2498"; repStart "-2317"; chr4 rmsk exon 177715503 177715848 890 - . gene_id "ERVLE_4q34.3h"; transcript_id "ERVLE_4q34.3h"; locus "ERVLE_4q34.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1251"; repClass "LTR"; repEnd "4292"; repFamily "ERVL"; repLeft "3935"; repStart "-1375"; chr4 rmsk exon 177715891 177716081 309 - . gene_id "ERVLE_4q34.3h"; transcript_id "ERVLE_4q34.3h"; locus "ERVLE_4q34.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1251"; repClass "LTR"; repEnd "2503"; repFamily "ERVL"; repLeft "2301"; repStart "-3164"; ### ERVLB4_4q34.3a ### chr4 rmsk gene 177761793 177765044 . - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0564"; model_cov "1861"; model_pct "32.6"; chr4 rmsk exon 177761793 177762242 472 - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0564"; repClass "LTR"; repEnd "4243"; repFamily "ERVL"; repLeft "3790"; repStart "-1471"; chr4 rmsk exon 177762537 177763172 1412 - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0564"; repClass "LTR"; repEnd "3480"; repFamily "ERVL"; repLeft "2836"; repStart "-2234"; chr4 rmsk exon 177763210 177763868 822 - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0564"; repClass "LTR"; repEnd "2627"; repFamily "ERVL"; repLeft "2025"; repStart "-3087"; chr4 rmsk exon 177764167 177764239 822 - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0564"; repClass "LTR"; repEnd "2024"; repFamily "ERVL"; repLeft "1971"; repStart "-3690"; chr4 rmsk exon 177764927 177765044 822 - . gene_id "ERVLB4_4q34.3a"; transcript_id "ERVLB4_4q34.3a"; locus "ERVLB4_4q34.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0564"; repClass "LTR"; repEnd "1970"; repFamily "ERVL"; repLeft "1861"; repStart "-3744"; ### ERVLB4_4q34.3b ### chr4 rmsk gene 177922457 177923507 . - . gene_id "ERVLB4_4q34.3b"; transcript_id "ERVLB4_4q34.3b"; locus "ERVLB4_4q34.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0565"; model_cov "1028"; model_pct "18.0"; chr4 rmsk exon 177922457 177922500 239 - . gene_id "ERVLB4_4q34.3b"; transcript_id "ERVLB4_4q34.3b"; locus "ERVLB4_4q34.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0565"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "168"; repStart "-204"; chr4 rmsk exon 177922551 177923507 4509 - . gene_id "ERVLB4_4q34.3b"; transcript_id "ERVLB4_4q34.3b"; locus "ERVLB4_4q34.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0565"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4686"; repStart "0"; ### HERVL18_4q34.3 ### chr4 rmsk gene 178136542 178143132 . + . gene_id "HERVL18_4q34.3"; transcript_id "HERVL18_4q34.3"; locus "HERVL18_4q34.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0052"; model_cov "6045"; model_pct "100.0"; chr4 rmsk exon 178136542 178136870 1251 + . gene_id "HERVL18_4q34.3"; transcript_id "HERVL18_4q34.3"; locus "HERVL18_4q34.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0052"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr4 rmsk exon 178136878 178142826 37406 + . gene_id "HERVL18_4q34.3"; transcript_id "HERVL18_4q34.3"; locus "HERVL18_4q34.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0052"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr4 rmsk exon 178142828 178143132 1018 + . gene_id "HERVL18_4q34.3"; transcript_id "HERVL18_4q34.3"; locus "HERVL18_4q34.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0052"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_4q34.3a ### chr4 rmsk gene 178207120 178213342 . + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0449"; model_cov "5639"; model_pct "73.1"; chr4 rmsk exon 178207120 178207531 2657 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 178207534 178210506 19404 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr4 rmsk exon 178210487 178210633 885 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3141"; chr4 rmsk exon 178210624 178212337 8411 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr4 rmsk exon 178212339 178212554 1363 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 178212553 178212931 2332 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 178212932 178213342 2652 + . gene_id "HERVH_4q34.3a"; transcript_id "HERVH_4q34.3a"; locus "HERVH_4q34.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0449"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR25_4q34.3 ### chr4 rmsk gene 178271273 178273109 . + . gene_id "LTR25_4q34.3"; transcript_id "LTR25_4q34.3"; locus "LTR25_4q34.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0041"; model_cov "774"; model_pct "10.8"; chr4 rmsk exon 178271273 178271386 620 + . gene_id "LTR25_4q34.3"; transcript_id "LTR25_4q34.3"; locus "LTR25_4q34.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0041"; repClass "LTR"; repEnd "2101"; repFamily "ERV1"; repLeft "-5087"; repStart "1990"; chr4 rmsk exon 178271519 178273109 3173 + . gene_id "LTR25_4q34.3"; transcript_id "LTR25_4q34.3"; locus "LTR25_4q34.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0041"; repClass "LTR"; repEnd "4415"; repFamily "ERV1"; repLeft "-2773"; repStart "3752"; ### MER61_4q34.3 ### chr4 rmsk gene 178273100 178276397 . + . gene_id "MER61_4q34.3"; transcript_id "MER61_4q34.3"; locus "MER61_4q34.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0146"; model_cov "2901"; model_pct "55.6"; chr4 rmsk exon 178273100 178275130 12901 + . gene_id "MER61_4q34.3"; transcript_id "MER61_4q34.3"; locus "MER61_4q34.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0146"; repClass "LTR"; repEnd "4037"; repFamily "ERV1"; repLeft "-1180"; repStart "1983"; chr4 rmsk exon 178275159 178275964 2578 + . gene_id "MER61_4q34.3"; transcript_id "MER61_4q34.3"; locus "MER61_4q34.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0146"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4370"; chr4 rmsk exon 178276006 178276397 1563 + . gene_id "MER61_4q34.3"; transcript_id "MER61_4q34.3"; locus "MER61_4q34.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0146"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "114"; ### ERVLB4_4q34.3c ### chr4 rmsk gene 178591572 178592956 . + . gene_id "ERVLB4_4q34.3c"; transcript_id "ERVLB4_4q34.3c"; locus "ERVLB4_4q34.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0566"; model_cov "1171"; model_pct "20.5"; chr4 rmsk exon 178591572 178592470 1218 + . gene_id "ERVLB4_4q34.3c"; transcript_id "ERVLB4_4q34.3c"; locus "ERVLB4_4q34.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0566"; repClass "LTR"; repEnd "2669"; repFamily "ERVL"; repLeft "-3045"; repStart "1740"; chr4 rmsk exon 178592718 178592956 309 + . gene_id "ERVLB4_4q34.3c"; transcript_id "ERVLB4_4q34.3c"; locus "ERVLB4_4q34.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0566"; repClass "LTR"; repEnd "3315"; repFamily "ERVL"; repLeft "-2399"; repStart "3073"; ### ERVLE_4q34.3i ### chr4 rmsk gene 178663707 178665992 . + . gene_id "ERVLE_4q34.3i"; transcript_id "ERVLE_4q34.3i"; locus "ERVLE_4q34.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1253"; model_cov "1425"; model_pct "25.1"; chr4 rmsk exon 178663707 178663975 425 + . gene_id "ERVLE_4q34.3i"; transcript_id "ERVLE_4q34.3i"; locus "ERVLE_4q34.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1253"; repClass "LTR"; repEnd "1282"; repFamily "ERVL"; repLeft "-4385"; repStart "1005"; chr4 rmsk exon 178664142 178664339 304 + . gene_id "ERVLE_4q34.3i"; transcript_id "ERVLE_4q34.3i"; locus "ERVLE_4q34.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1253"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "-3679"; repStart "1797"; chr4 rmsk exon 178664412 178664571 343 + . gene_id "ERVLE_4q34.3i"; transcript_id "ERVLE_4q34.3i"; locus "ERVLE_4q34.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1253"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "-3389"; repStart "2097"; chr4 rmsk exon 178665245 178665992 906 + . gene_id "ERVLE_4q34.3i"; transcript_id "ERVLE_4q34.3i"; locus "ERVLE_4q34.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1253"; repClass "LTR"; repEnd "4146"; repFamily "ERVL"; repLeft "-1521"; repStart "3370"; ### HUERSP3B_4q34.3 ### chr4 rmsk gene 178820877 178822524 . - . gene_id "HUERSP3B_4q34.3"; transcript_id "HUERSP3B_4q34.3"; locus "HUERSP3B_4q34.3"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0049"; model_cov "773"; model_pct "10.4"; chr4 rmsk exon 178820877 178821415 3824 - . gene_id "HUERSP3B_4q34.3"; transcript_id "HUERSP3B_4q34.3"; locus "HUERSP3B_4q34.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0049"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "1"; repStart "-84"; chr4 rmsk exon 178821683 178822339 4469 - . gene_id "HUERSP3B_4q34.3"; transcript_id "HUERSP3B_4q34.3"; locus "HUERSP3B_4q34.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0049"; repClass "LTR"; repEnd "6821"; repFamily "ERV1"; repLeft "6169"; repStart "-597"; chr4 rmsk exon 178822403 178822524 840 - . gene_id "HUERSP3B_4q34.3"; transcript_id "HUERSP3B_4q34.3"; locus "HUERSP3B_4q34.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0049"; repClass "LTR"; repEnd "6180"; repFamily "ERV1"; repLeft "6059"; repStart "-1238"; ### ERVLE_4q34.3j ### chr4 rmsk gene 178954691 178955997 . - . gene_id "ERVLE_4q34.3j"; transcript_id "ERVLE_4q34.3j"; locus "ERVLE_4q34.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1254"; model_cov "1257"; model_pct "22.2"; chr4 rmsk exon 178954691 178954784 252 - . gene_id "ERVLE_4q34.3j"; transcript_id "ERVLE_4q34.3j"; locus "ERVLE_4q34.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1254"; repClass "LTR"; repEnd "3334"; repFamily "ERVL"; repLeft "3239"; repStart "-2333"; chr4 rmsk exon 178954861 178955997 1111 - . gene_id "ERVLE_4q34.3j"; transcript_id "ERVLE_4q34.3j"; locus "ERVLE_4q34.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1254"; repClass "LTR"; repEnd "2232"; repFamily "ERVL"; repLeft "1070"; repStart "-3435"; ### HERVH_4q34.3b ### chr4 rmsk gene 179166476 179170568 . - . gene_id "HERVH_4q34.3b"; transcript_id "HERVH_4q34.3b"; locus "HERVH_4q34.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0450"; model_cov "3275"; model_pct "42.5"; chr4 rmsk exon 179166476 179166926 3444 - . gene_id "HERVH_4q34.3b"; transcript_id "HERVH_4q34.3b"; locus "HERVH_4q34.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0450"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 179166927 179167308 2466 - . gene_id "HERVH_4q34.3b"; transcript_id "HERVH_4q34.3b"; locus "HERVH_4q34.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0450"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr4 rmsk exon 179167324 179170117 18887 - . gene_id "HERVH_4q34.3b"; transcript_id "HERVH_4q34.3b"; locus "HERVH_4q34.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0450"; repClass "LTR"; repEnd "2885"; repFamily "ERV1"; repLeft "1"; repStart "-4828"; chr4 rmsk exon 179170120 179170568 3513 - . gene_id "HERVH_4q34.3b"; transcript_id "HERVH_4q34.3b"; locus "HERVH_4q34.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0450"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_4q34.3k ### chr4 rmsk gene 179212887 179217724 . + . gene_id "ERVLE_4q34.3k"; transcript_id "ERVLE_4q34.3k"; locus "ERVLE_4q34.3k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1255"; model_cov "2513"; model_pct "44.3"; chr4 rmsk exon 179212887 179213547 703 + . gene_id "ERVLE_4q34.3k"; transcript_id "ERVLE_4q34.3k"; locus "ERVLE_4q34.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1255"; repClass "LTR"; repEnd "2548"; repFamily "ERVL"; repLeft "-3119"; repStart "1859"; chr4 rmsk exon 179214931 179216574 1454 + . gene_id "ERVLE_4q34.3k"; transcript_id "ERVLE_4q34.3k"; locus "ERVLE_4q34.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1255"; repClass "LTR"; repEnd "5002"; repFamily "ERVL"; repLeft "-665"; repStart "3343"; chr4 rmsk exon 179217567 179217724 319 + . gene_id "ERVLE_4q34.3k"; transcript_id "ERVLE_4q34.3k"; locus "ERVLE_4q34.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1255"; repClass "LTR"; repEnd "5510"; repFamily "ERVL"; repLeft "-157"; repStart "5345"; ### ERV316A3_4q34.3b ### chr4 rmsk gene 179220300 179226576 . + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0910"; model_cov "3512"; model_pct "67.2"; chr4 rmsk exon 179220300 179220599 535 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-15"; repStart "95"; chr4 rmsk exon 179221098 179221554 1100 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "1482"; repFamily "ERVL"; repLeft "-3744"; repStart "1033"; chr4 rmsk exon 179222080 179222594 1784 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "2086"; repFamily "ERVL"; repLeft "-3140"; repStart "1591"; chr4 rmsk exon 179222978 179223248 1784 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "2382"; repFamily "ERVL"; repLeft "-2844"; repStart "2087"; chr4 rmsk exon 179223285 179223563 1784 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "2664"; repFamily "ERVL"; repLeft "-2562"; repStart "2383"; chr4 rmsk exon 179224246 179226136 3065 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "3184"; chr4 rmsk exon 179226186 179226576 979 + . gene_id "ERV316A3_4q34.3b"; transcript_id "ERV316A3_4q34.3b"; locus "ERV316A3_4q34.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0910"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "17"; ### HERVFRD_4q34.3 ### chr4 rmsk gene 179257567 179260384 . - . gene_id "HERVFRD_4q34.3"; transcript_id "HERVFRD_4q34.3"; locus "HERVFRD_4q34.3"; category "internal"; intModel "MER50-int"; locid "MER50-int_0066"; model_cov "4968"; model_pct "69.0"; chr4 rmsk exon 179257567 179260384 8946 - . gene_id "HERVFRD_4q34.3"; transcript_id "HERVFRD_4q34.3"; locus "HERVFRD_4q34.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0066"; repClass "LTR"; repEnd "6205"; repFamily "ERV1"; repLeft "1237"; repStart "-1000"; ### HERVL_4q34.3a ### chr4 rmsk gene 179260385 179262165 . + . gene_id "HERVL_4q34.3a"; transcript_id "HERVL_4q34.3a"; locus "HERVL_4q34.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0456"; model_cov "1285"; model_pct "22.7"; chr4 rmsk exon 179260385 179260918 2294 + . gene_id "HERVL_4q34.3a"; transcript_id "HERVL_4q34.3a"; locus "HERVL_4q34.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0456"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr4 rmsk exon 179260919 179262165 8383 + . gene_id "HERVL_4q34.3a"; transcript_id "HERVL_4q34.3a"; locus "HERVL_4q34.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0456"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "-4368"; repStart "1"; ### HERVL_4q34.3b ### chr4 rmsk gene 179299455 179300557 . - . gene_id "HERVL_4q34.3b"; transcript_id "HERVL_4q34.3b"; locus "HERVL_4q34.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0457"; model_cov "644"; model_pct "11.4"; chr4 rmsk exon 179299455 179299494 2918 - . gene_id "HERVL_4q34.3b"; transcript_id "HERVL_4q34.3b"; locus "HERVL_4q34.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0457"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr4 rmsk exon 179299539 179299914 2918 - . gene_id "HERVL_4q34.3b"; transcript_id "HERVL_4q34.3b"; locus "HERVL_4q34.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0457"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "2"; repStart "-40"; chr4 rmsk exon 179299915 179300557 5061 - . gene_id "HERVL_4q34.3b"; transcript_id "HERVL_4q34.3b"; locus "HERVL_4q34.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0457"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5010"; repStart "0"; ### ERVLB4_4q34.3d ### chr4 rmsk gene 179324461 179326260 . - . gene_id "ERVLB4_4q34.3d"; transcript_id "ERVLB4_4q34.3d"; locus "ERVLB4_4q34.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0567"; model_cov "1216"; model_pct "21.3"; chr4 rmsk exon 179324461 179325647 6474 - . gene_id "ERVLB4_4q34.3d"; transcript_id "ERVLB4_4q34.3d"; locus "ERVLB4_4q34.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0567"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "3652"; repStart "-846"; chr4 rmsk exon 179325759 179325840 1261 - . gene_id "ERVLB4_4q34.3d"; transcript_id "ERVLB4_4q34.3d"; locus "ERVLB4_4q34.3d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0567"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "353"; repStart "0"; chr4 rmsk exon 179325871 179326260 1261 - . gene_id "ERVLB4_4q34.3d"; transcript_id "ERVLB4_4q34.3d"; locus "ERVLB4_4q34.3d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0567"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "1"; repStart "-62"; ### ERVLB4_4q34.3e ### chr4 rmsk gene 179390098 179392471 . - . gene_id "ERVLB4_4q34.3e"; transcript_id "ERVLB4_4q34.3e"; locus "ERVLB4_4q34.3e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0568"; model_cov "2544"; model_pct "44.5"; chr4 rmsk exon 179390098 179390929 3764 - . gene_id "ERVLB4_4q34.3e"; transcript_id "ERVLB4_4q34.3e"; locus "ERVLB4_4q34.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0568"; repClass "LTR"; repEnd "5481"; repFamily "ERVL"; repLeft "4649"; repStart "-233"; chr4 rmsk exon 179390927 179392471 5822 - . gene_id "ERVLB4_4q34.3e"; transcript_id "ERVLB4_4q34.3e"; locus "ERVLB4_4q34.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0568"; repClass "LTR"; repEnd "3654"; repFamily "ERVL"; repLeft "1942"; repStart "-2060"; ### HERVH_4q34.3c ### chr4 rmsk gene 179403518 179409294 . + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0451"; model_cov "4973"; model_pct "64.5"; chr4 rmsk exon 179403518 179403883 1970 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr4 rmsk exon 179403885 179404335 1854 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr4 rmsk exon 179404394 179407140 11129 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "-4127"; repStart "800"; chr4 rmsk exon 179407140 179407263 692 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-3778"; repStart "3811"; chr4 rmsk exon 179407343 179408490 7117 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "3845"; chr4 rmsk exon 179408495 179408926 2802 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr4 rmsk exon 179408927 179409294 2074 + . gene_id "HERVH_4q34.3c"; transcript_id "HERVH_4q34.3c"; locus "HERVH_4q34.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0451"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q34.3l ### chr4 rmsk gene 179432281 179435611 . - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1256"; model_cov "2038"; model_pct "36.0"; chr4 rmsk exon 179432281 179432761 1352 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4 rmsk exon 179432887 179432972 268 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "3048"; repFamily "ERVL"; repLeft "2961"; repStart "-2619"; chr4 rmsk exon 179433026 179433686 1305 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "2188"; repStart "-2801"; chr4 rmsk exon 179433741 179433853 301 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "2179"; repFamily "ERVL"; repLeft "2007"; repStart "-3488"; chr4 rmsk exon 179434035 179434472 658 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "1890"; repFamily "ERVL"; repLeft "1440"; repStart "-3777"; chr4 rmsk exon 179434556 179434877 288 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "1245"; repFamily "ERVL"; repLeft "908"; repStart "-4422"; chr4 rmsk exon 179435306 179435611 404 - . gene_id "ERVLE_4q34.3l"; transcript_id "ERVLE_4q34.3l"; locus "ERVLE_4q34.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1256"; repClass "LTR"; repEnd "594"; repFamily "ERVL"; repLeft "280"; repStart "-5073"; ### ERVLB4_4q34.3f ### chr4 rmsk gene 179485015 179489609 . - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0569"; model_cov "3163"; model_pct "55.4"; chr4 rmsk exon 179485015 179485498 1608 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "14"; repStart "-13"; chr4 rmsk exon 179485506 179485796 1249 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5423"; repStart "0"; chr4 rmsk exon 179486018 179487713 8930 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "4980"; repFamily "ERVL"; repLeft "3234"; repStart "-734"; chr4 rmsk exon 179487980 179488506 4540 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "1128"; repFamily "ERVL"; repLeft "565"; repStart "-4586"; chr4 rmsk exon 179488549 179489070 4540 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "1"; repStart "-5150"; chr4 rmsk exon 179489071 179489609 1480 - . gene_id "ERVLB4_4q34.3f"; transcript_id "ERVLB4_4q34.3f"; locus "ERVLB4_4q34.3f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0569"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVH_4q34.3d ### chr4 rmsk gene 179720525 179726896 . + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0452"; model_cov "5759"; model_pct "74.7"; chr4 rmsk exon 179720525 179720933 2518 + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0452"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 179720936 179725897 21873 + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0452"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr4 rmsk exon 179725895 179726111 1282 + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0452"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr4 rmsk exon 179726112 179726485 2265 + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0452"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 179726486 179726896 2731 + . gene_id "HERVH_4q34.3d"; transcript_id "HERVH_4q34.3d"; locus "HERVH_4q34.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0452"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### PABLA_4q34.3 ### chr4 rmsk gene 179774022 179778102 . + . gene_id "PABLA_4q34.3"; transcript_id "PABLA_4q34.3"; locus "PABLA_4q34.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0041"; model_cov "4364"; model_pct "87.0"; chr4 rmsk exon 179774022 179774610 3650 + . gene_id "PABLA_4q34.3"; transcript_id "PABLA_4q34.3"; locus "PABLA_4q34.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0041"; repClass "LTR"; repEnd "-323"; repFamily "ERV1"; repLeft "-5338"; repStart "-930"; chr4 rmsk exon 179774651 179778102 13020 + . gene_id "PABLA_4q34.3"; transcript_id "PABLA_4q34.3"; locus "PABLA_4q34.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0041"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-3"; repStart "1255"; ### ERVLE_4q34.3m ### chr4 rmsk gene 179828213 179833723 . + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1257"; model_cov "4495"; model_pct "79.3"; chr4 rmsk exon 179828213 179830028 11168 + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1257"; repClass "LTR"; repEnd "2998"; repFamily "ERVL"; repLeft "-2669"; repStart "1170"; chr4 rmsk exon 179830315 179831627 11168 + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1257"; repClass "LTR"; repEnd "4355"; repFamily "ERVL"; repLeft "-1312"; repStart "2999"; chr4 rmsk exon 179831941 179833231 11168 + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1257"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4356"; chr4 rmsk exon 179833233 179833371 701 + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1257"; repClass "LTR"; repEnd "143"; repFamily "ERVL"; repLeft "-520"; repStart "2"; chr4 rmsk exon 179833389 179833723 1092 + . gene_id "ERVLE_4q34.3m"; transcript_id "ERVLE_4q34.3m"; locus "ERVLE_4q34.3m"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1257"; repClass "LTR"; repEnd "584"; repFamily "ERVL"; repLeft "-79"; repStart "216"; ### ERV316A3_4q34.3c ### chr4 rmsk gene 179855351 179856604 . - . gene_id "ERV316A3_4q34.3c"; transcript_id "ERV316A3_4q34.3c"; locus "ERV316A3_4q34.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0911"; model_cov "1211"; model_pct "23.2"; chr4 rmsk exon 179855351 179856032 1969 - . gene_id "ERV316A3_4q34.3c"; transcript_id "ERV316A3_4q34.3c"; locus "ERV316A3_4q34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0911"; repClass "LTR"; repEnd "2821"; repFamily "ERVL"; repLeft "2142"; repStart "-2405"; chr4 rmsk exon 179856072 179856604 1969 - . gene_id "ERV316A3_4q34.3c"; transcript_id "ERV316A3_4q34.3c"; locus "ERV316A3_4q34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0911"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "1609"; repStart "-3085"; ### HUERSP1_4q34.3 ### chr4 rmsk gene 182263193 182268471 . + . gene_id "HUERSP1_4q34.3"; transcript_id "HUERSP1_4q34.3"; locus "HUERSP1_4q34.3"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0068"; model_cov "5739"; model_pct "91.6"; chr4 rmsk exon 182263193 182263937 3717 + . gene_id "HUERSP1_4q34.3"; transcript_id "HUERSP1_4q34.3"; locus "HUERSP1_4q34.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0068"; repClass "LTR"; repEnd "1168"; repFamily "ERV1"; repLeft "-5095"; repStart "322"; chr4 rmsk exon 182263933 182268471 13240 + . gene_id "HUERSP1_4q34.3"; transcript_id "HUERSP1_4q34.3"; locus "HUERSP1_4q34.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0068"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "1369"; ### HERVH_4q35.1a ### chr4 rmsk gene 182814310 182818919 . + . gene_id "HERVH_4q35.1a"; transcript_id "HERVH_4q35.1a"; locus "HERVH_4q35.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0453"; model_cov "6209"; model_pct "80.5"; chr4 rmsk exon 182814310 182814743 2811 + . gene_id "HERVH_4q35.1a"; transcript_id "HERVH_4q35.1a"; locus "HERVH_4q35.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0453"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr4 rmsk exon 182814744 182818109 16618 + . gene_id "HERVH_4q35.1a"; transcript_id "HERVH_4q35.1a"; locus "HERVH_4q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0453"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "1"; chr4 rmsk exon 182818108 182818486 2400 + . gene_id "HERVH_4q35.1a"; transcript_id "HERVH_4q35.1a"; locus "HERVH_4q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0453"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr4 rmsk exon 182818487 182818919 2767 + . gene_id "HERVH_4q35.1a"; transcript_id "HERVH_4q35.1a"; locus "HERVH_4q35.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0453"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_4q35.1a ### chr4 rmsk gene 182953790 182956090 . + . gene_id "ERVLE_4q35.1a"; transcript_id "ERVLE_4q35.1a"; locus "ERVLE_4q35.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1258"; model_cov "1656"; model_pct "29.2"; chr4 rmsk exon 182953790 182954793 1791 + . gene_id "ERVLE_4q35.1a"; transcript_id "ERVLE_4q35.1a"; locus "ERVLE_4q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1258"; repClass "LTR"; repEnd "3487"; repFamily "ERVL"; repLeft "-2180"; repStart "2370"; chr4 rmsk exon 182955564 182956090 955 + . gene_id "ERVLE_4q35.1a"; transcript_id "ERVLE_4q35.1a"; locus "ERVLE_4q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1258"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "-1269"; repStart "3859"; ### HERVW_4q35.1 ### chr4 rmsk gene 182999393 183004400 . + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0112"; model_cov "4713"; model_pct "54.6"; chr4 rmsk exon 182999393 183000000 4862 + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0112"; repClass "LTR"; repEnd "2252"; repFamily "ERV1"; repLeft "-6374"; repStart "1644"; chr4 rmsk exon 183000001 183003764 32307 + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0112"; repClass "LTR"; repEnd "6023"; repFamily "ERV1"; repLeft "-2603"; repStart "2253"; chr4 rmsk exon 183003754 183003792 260 + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0112"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr4 rmsk exon 183003777 183004074 2431 + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0112"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8329"; chr4 rmsk exon 183004075 183004400 2935 + . gene_id "HERVW_4q35.1"; transcript_id "HERVW_4q35.1"; locus "HERVW_4q35.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0112"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_4q35.1 ### chr4 rmsk gene 183068724 183070206 . - . gene_id "ERV316A3_4q35.1"; transcript_id "ERV316A3_4q35.1"; locus "ERV316A3_4q35.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0913"; model_cov "808"; model_pct "15.5"; chr4 rmsk exon 183068724 183069129 1354 - . gene_id "ERV316A3_4q35.1"; transcript_id "ERV316A3_4q35.1"; locus "ERV316A3_4q35.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0913"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "2"; repStart "-2"; chr4 rmsk exon 183069130 183069519 1319 - . gene_id "ERV316A3_4q35.1"; transcript_id "ERV316A3_4q35.1"; locus "ERV316A3_4q35.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0913"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4811"; repStart "-6"; chr4 rmsk exon 183069507 183069911 854 - . gene_id "ERV316A3_4q35.1"; transcript_id "ERV316A3_4q35.1"; locus "ERV316A3_4q35.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0913"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "5"; repStart "-4822"; chr4 rmsk exon 183069912 183070206 1280 - . gene_id "ERV316A3_4q35.1"; transcript_id "ERV316A3_4q35.1"; locus "ERV316A3_4q35.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0913"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "167"; repStart "0"; ### ERVLE_4q35.1b ### chr4 rmsk gene 183762718 183764782 . - . gene_id "ERVLE_4q35.1b"; transcript_id "ERVLE_4q35.1b"; locus "ERVLE_4q35.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1259"; model_cov "1058"; model_pct "18.7"; chr4 rmsk exon 183762718 183763602 3091 - . gene_id "ERVLE_4q35.1b"; transcript_id "ERVLE_4q35.1b"; locus "ERVLE_4q35.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1259"; repClass "LTR"; repEnd "1110"; repFamily "ERVL"; repLeft "202"; repStart "-4557"; chr4 rmsk exon 183763896 183764059 3091 - . gene_id "ERVLE_4q35.1b"; transcript_id "ERVLE_4q35.1b"; locus "ERVLE_4q35.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1259"; repClass "LTR"; repEnd "201"; repFamily "ERVL"; repLeft "51"; repStart "-5466"; chr4 rmsk exon 183764122 183764782 1495 - . gene_id "ERVLE_4q35.1b"; transcript_id "ERVLE_4q35.1b"; locus "ERVLE_4q35.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1259"; repClass "LTR"; repEnd "657"; repFamily "ERVL"; repLeft "3"; repStart "-6"; ### ERVLE_4q35.1c ### chr4 rmsk gene 184041626 184042210 . - . gene_id "ERVLE_4q35.1c"; transcript_id "ERVLE_4q35.1c"; locus "ERVLE_4q35.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1260"; model_cov "646"; model_pct "11.4"; chr4 rmsk exon 184041626 184042210 1286 - . gene_id "ERVLE_4q35.1c"; transcript_id "ERVLE_4q35.1c"; locus "ERVLE_4q35.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1260"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "3168"; repStart "-1853"; ### HML1_4q35.1 ### chr4 rmsk gene 184909081 184913127 . - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0027"; model_cov "2202"; model_pct "36.1"; chr4 rmsk exon 184909081 184909485 2155 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 184909489 184909607 739 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr4 rmsk exon 184909683 184909864 1553 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5715"; repStart "-199"; chr4 rmsk exon 184909865 184910359 2028 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "5602"; repFamily "ERVK"; repLeft "4990"; repStart "-494"; chr4 rmsk exon 184910347 184910468 1025 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "4277"; repStart "-1698"; chr4 rmsk exon 184911542 184911989 3055 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "1704"; repStart "-3921"; chr4 rmsk exon 184912028 184912720 5224 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "694"; repFamily "ERVK"; repLeft "1"; repStart "-5402"; chr4 rmsk exon 184912721 184913092 2025 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr4 rmsk exon 184913081 184913127 292 - . gene_id "HML1_4q35.1"; transcript_id "HML1_4q35.1"; locus "HML1_4q35.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0027"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; ### HERV9_4q35.1 ### chr4 rmsk gene 184914735 184920481 . - . gene_id "HERV9_4q35.1"; transcript_id "HERV9_4q35.1"; locus "HERV9_4q35.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0048"; model_cov "5954"; model_pct "70.6"; chr4 rmsk exon 184914735 184915487 5660 - . gene_id "HERV9_4q35.1"; transcript_id "HERV9_4q35.1"; locus "HERV9_4q35.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0048"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 184915488 184920320 37109 - . gene_id "HERV9_4q35.1"; transcript_id "HERV9_4q35.1"; locus "HERV9_4q35.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0048"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "2642"; repStart "0"; chr4 rmsk exon 184920320 184920481 1366 - . gene_id "HERV9_4q35.1"; transcript_id "HERV9_4q35.1"; locus "HERV9_4q35.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0048"; repClass "LTR"; repEnd "4435"; repFamily "ERV1"; repLeft "4275"; repStart "-4001"; ### HML3_4q35.1 ### chr4 rmsk gene 185044790 185051686 . - . gene_id "HML3_4q35.1"; transcript_id "HML3_4q35.1"; locus "HML3_4q35.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0082"; model_cov "5933"; model_pct "98.5"; chr4 rmsk exon 185044790 185045308 4300 - . gene_id "HML3_4q35.1"; transcript_id "HML3_4q35.1"; locus "HML3_4q35.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0082"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 185045309 185050842 44293 - . gene_id "HML3_4q35.1"; transcript_id "HML3_4q35.1"; locus "HML3_4q35.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0082"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "368"; repStart "0"; chr4 rmsk exon 185050920 185051198 1966 - . gene_id "HML3_4q35.1"; transcript_id "HML3_4q35.1"; locus "HML3_4q35.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0082"; repClass "LTR"; repEnd "281"; repFamily "ERVK"; repLeft "1"; repStart "-5740"; chr4 rmsk exon 185051199 185051686 3864 - . gene_id "HML3_4q35.1"; transcript_id "HML3_4q35.1"; locus "HML3_4q35.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0082"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR19_4q35.1 ### chr4 rmsk gene 185324325 185330494 . - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0015"; model_cov "4806"; model_pct "86.0"; chr4 rmsk exon 185324325 185324787 3605 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 185324788 185325240 3698 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "5126"; repStart "0"; chr4 rmsk exon 185325236 185325252 16693 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "4367"; repStart "-1205"; chr4 rmsk exon 185325558 185327568 16693 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "4366"; repFamily "ERV1"; repLeft "2345"; repStart "-1220"; chr4 rmsk exon 185327560 185327623 410 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "2799"; repFamily "ERV1"; repLeft "2744"; repStart "-2787"; chr4 rmsk exon 185327749 185330014 17520 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "2257"; repFamily "ERV1"; repLeft "1"; repStart "-3329"; chr4 rmsk exon 185330015 185330494 3781 - . gene_id "LTR19_4q35.1"; transcript_id "LTR19_4q35.1"; locus "LTR19_4q35.1"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0015"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_4q35.1b ### chr4 rmsk gene 186044023 186049672 . - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0454"; model_cov "4782"; model_pct "62.0"; chr4 rmsk exon 186044023 186044424 2748 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 186044425 186044800 2407 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr4 rmsk exon 186044801 186045016 1361 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr4 rmsk exon 186045018 186045680 4593 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 186045683 186046537 5739 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4 rmsk exon 186046517 186048750 15120 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "793"; repStart "-4718"; chr4 rmsk exon 186048804 186049272 3236 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr4 rmsk exon 186049275 186049672 2572 - . gene_id "HERVH_4q35.1b"; transcript_id "HERVH_4q35.1b"; locus "HERVH_4q35.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0454"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL74_4q35.1 ### chr4 rmsk gene 186056030 186059149 . + . gene_id "HERVL74_4q35.1"; transcript_id "HERVL74_4q35.1"; locus "HERVL74_4q35.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0028"; model_cov "1217"; model_pct "21.4"; chr4 rmsk exon 186056030 186056610 1553 + . gene_id "HERVL74_4q35.1"; transcript_id "HERVL74_4q35.1"; locus "HERVL74_4q35.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0028"; repClass "LTR"; repEnd "5087"; repFamily "ERVL"; repLeft "-598"; repStart "4503"; chr4 rmsk exon 186058143 186058687 1142 + . gene_id "HERVL74_4q35.1"; transcript_id "HERVL74_4q35.1"; locus "HERVL74_4q35.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0028"; repClass "LTR"; repEnd "5670"; repFamily "ERVL"; repLeft "-15"; repStart "5037"; chr4 rmsk exon 186058696 186059149 2247 + . gene_id "HERVL74_4q35.1"; transcript_id "HERVL74_4q35.1"; locus "HERVL74_4q35.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0028"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-2"; repStart "2"; ### HERVL_4q35.2 ### chr4 rmsk gene 186218743 186220390 . - . gene_id "HERVL_4q35.2"; transcript_id "HERVL_4q35.2"; locus "HERVL_4q35.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0458"; model_cov "1095"; model_pct "19.4"; chr4 rmsk exon 186218743 186219289 2126 - . gene_id "HERVL_4q35.2"; transcript_id "HERVL_4q35.2"; locus "HERVL_4q35.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0458"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr4 rmsk exon 186219290 186220390 8442 - . gene_id "HERVL_4q35.2"; transcript_id "HERVL_4q35.2"; locus "HERVL_4q35.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0458"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4559"; repStart "0"; ### HERVH_4q35.2a ### chr4 rmsk gene 186241956 186247584 . - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0455"; model_cov "5426"; model_pct "70.3"; chr4 rmsk exon 186241956 186242322 2204 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 186242323 186242755 2649 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr4 rmsk exon 186242760 186244000 6740 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4868"; repStart "-1290"; chr4 rmsk exon 186244004 186244448 2661 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr4 rmsk exon 186244428 186247216 13419 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr4 rmsk exon 186247217 186247584 2223 - . gene_id "HERVH_4q35.2a"; transcript_id "HERVH_4q35.2a"; locus "HERVH_4q35.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0455"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_4q35.2a ### chr4 rmsk gene 186509648 186511737 . - . gene_id "ERVLE_4q35.2a"; transcript_id "ERVLE_4q35.2a"; locus "ERVLE_4q35.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1261"; model_cov "1539"; model_pct "27.2"; chr4 rmsk exon 186509648 186510374 630 - . gene_id "ERVLE_4q35.2a"; transcript_id "ERVLE_4q35.2a"; locus "ERVLE_4q35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1261"; repClass "LTR"; repEnd "5557"; repFamily "ERVL"; repLeft "4815"; repStart "-110"; chr4 rmsk exon 186510761 186511189 630 - . gene_id "ERVLE_4q35.2a"; transcript_id "ERVLE_4q35.2a"; locus "ERVLE_4q35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1261"; repClass "LTR"; repEnd "4814"; repFamily "ERVL"; repLeft "4362"; repStart "-853"; chr4 rmsk exon 186511405 186511737 647 - . gene_id "ERVLE_4q35.2a"; transcript_id "ERVLE_4q35.2a"; locus "ERVLE_4q35.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1261"; repClass "LTR"; repEnd "3895"; repFamily "ERVL"; repLeft "3550"; repStart "-1772"; ### ERV316A3_4q35.2a ### chr4 rmsk gene 186513234 186516728 . + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0914"; model_cov "2522"; model_pct "48.3"; chr4 rmsk exon 186513234 186513288 260 + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0914"; repClass "LTR"; repEnd "2304"; repFamily "ERVL"; repLeft "-2922"; repStart "2250"; chr4 rmsk exon 186513296 186514162 1766 + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0914"; repClass "LTR"; repEnd "3506"; repFamily "ERVL"; repLeft "-1720"; repStart "2680"; chr4 rmsk exon 186514498 186515601 3752 + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0914"; repClass "LTR"; repEnd "4678"; repFamily "ERVL"; repLeft "-548"; repStart "3583"; chr4 rmsk exon 186515892 186516411 3752 + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0914"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4679"; chr4 rmsk exon 186516443 186516728 864 + . gene_id "ERV316A3_4q35.2a"; transcript_id "ERV316A3_4q35.2a"; locus "ERV316A3_4q35.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0914"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "-132"; repStart "28"; ### ERVLE_4q35.2b ### chr4 rmsk gene 186538549 186543865 . + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1262"; model_cov "2726"; model_pct "48.1"; chr4 rmsk exon 186538549 186538705 386 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "579"; repFamily "ERVL"; repLeft "-84"; repStart "413"; chr4 rmsk exon 186539331 186539415 416 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "-2631"; repStart "2956"; chr4 rmsk exon 186540427 186540630 469 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "3417"; repFamily "ERVL"; repLeft "-2250"; repStart "3128"; chr4 rmsk exon 186540903 186541390 1866 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "3812"; repFamily "ERVL"; repLeft "-1855"; repStart "3323"; chr4 rmsk exon 186541857 186542841 6346 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "4855"; repFamily "ERVL"; repLeft "-812"; repStart "3798"; chr4 rmsk exon 186543106 186543865 6346 + . gene_id "ERVLE_4q35.2b"; transcript_id "ERVLE_4q35.2b"; locus "ERVLE_4q35.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1262"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4856"; ### ERVLE_4q35.2c ### chr4 rmsk gene 186831560 186833270 . + . gene_id "ERVLE_4q35.2c"; transcript_id "ERVLE_4q35.2c"; locus "ERVLE_4q35.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1263"; model_cov "2074"; model_pct "36.6"; chr4 rmsk exon 186831560 186831667 267 + . gene_id "ERVLE_4q35.2c"; transcript_id "ERVLE_4q35.2c"; locus "ERVLE_4q35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1263"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-2315"; repStart "3156"; chr4 rmsk exon 186831672 186832015 895 + . gene_id "ERVLE_4q35.2c"; transcript_id "ERVLE_4q35.2c"; locus "ERVLE_4q35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1263"; repClass "LTR"; repEnd "3717"; repFamily "ERVL"; repLeft "-1950"; repStart "3221"; chr4 rmsk exon 186832042 186832374 799 + . gene_id "ERVLE_4q35.2c"; transcript_id "ERVLE_4q35.2c"; locus "ERVLE_4q35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1263"; repClass "LTR"; repEnd "4403"; repFamily "ERVL"; repLeft "-1264"; repStart "4063"; chr4 rmsk exon 186832371 186833270 1580 + . gene_id "ERVLE_4q35.2c"; transcript_id "ERVLE_4q35.2c"; locus "ERVLE_4q35.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1263"; repClass "LTR"; repEnd "5069"; repFamily "ERVL"; repLeft "-598"; repStart "4027"; ### ERV316A3_4q35.2b ### chr4 rmsk gene 187330685 187333812 . + . gene_id "ERV316A3_4q35.2b"; transcript_id "ERV316A3_4q35.2b"; locus "ERV316A3_4q35.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0916"; model_cov "3205"; model_pct "61.3"; chr4 rmsk exon 187330685 187331800 2084 + . gene_id "ERV316A3_4q35.2b"; transcript_id "ERV316A3_4q35.2b"; locus "ERV316A3_4q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0916"; repClass "LTR"; repEnd "2767"; repFamily "ERVL"; repLeft "-2459"; repStart "1630"; chr4 rmsk exon 187331815 187333812 3446 + . gene_id "ERV316A3_4q35.2b"; transcript_id "ERV316A3_4q35.2b"; locus "ERV316A3_4q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0916"; repClass "LTR"; repEnd "4869"; repFamily "ERVL"; repLeft "-357"; repStart "2801"; ### ERV316A3_4q35.2c ### chr4 rmsk gene 187648954 187650752 . + . gene_id "ERV316A3_4q35.2c"; transcript_id "ERV316A3_4q35.2c"; locus "ERV316A3_4q35.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0917"; model_cov "1566"; model_pct "30.0"; chr4 rmsk exon 187648954 187649188 590 + . gene_id "ERV316A3_4q35.2c"; transcript_id "ERV316A3_4q35.2c"; locus "ERV316A3_4q35.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0917"; repClass "LTR"; repEnd "251"; repFamily "ERVL"; repLeft "-200"; repStart "1"; chr4 rmsk exon 187649195 187650752 4311 + . gene_id "ERV316A3_4q35.2c"; transcript_id "ERV316A3_4q35.2c"; locus "ERV316A3_4q35.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0917"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "-122"; repStart "3538"; ### ERVLB4_4q35.2a ### chr4 rmsk gene 187761091 187765125 . - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0571"; model_cov "3473"; model_pct "60.8"; chr4 rmsk exon 187761091 187761169 992 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "487"; repStart "0"; chr4 rmsk exon 187761463 187761782 1481 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "143"; repStart "-70"; chr4 rmsk exon 187761783 187762252 2416 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5213"; repStart "0"; chr4 rmsk exon 187762236 187764349 11059 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "2576"; repFamily "ERVL"; repLeft "415"; repStart "-3138"; chr4 rmsk exon 187764351 187764424 361 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "415"; repStart "-5223"; chr4 rmsk exon 187764426 187764493 379 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "422"; repStart "-5223"; chr4 rmsk exon 187764496 187764553 297 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "415"; repStart "-5239"; chr4 rmsk exon 187764555 187764632 367 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "408"; repStart "-5223"; chr4 rmsk exon 187764630 187764697 379 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "422"; repStart "-5223"; chr4 rmsk exon 187764700 187764757 297 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "415"; repStart "-5239"; chr4 rmsk exon 187764759 187765125 1863 - . gene_id "ERVLB4_4q35.2a"; transcript_id "ERVLB4_4q35.2a"; locus "ERVLB4_4q35.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0571"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "97"; repStart "-5223"; ### MER4_4q35.2 ### chr4 rmsk gene 187770327 187775598 . - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0269"; model_cov "3599"; model_pct "54.5"; chr4 rmsk exon 187770327 187770822 3034 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0269"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr4 rmsk exon 187770830 187771866 14827 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "5527"; repStart "-1"; chr4 rmsk exon 187772157 187773702 14827 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "5526"; repFamily "ERV1"; repLeft "3918"; repStart "-1072"; chr4 rmsk exon 187773695 187774269 2332 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "2737"; repStart "-3268"; chr4 rmsk exon 187774514 187774720 1466 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2295"; repStart "-4103"; chr4 rmsk exon 187775028 187775070 1466 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "2294"; repFamily "ERV1"; repLeft "2252"; repStart "-4304"; chr4 rmsk exon 187775069 187775152 606 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0269"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "2"; repStart "-6510"; chr4 rmsk exon 187775157 187775598 3057 - . gene_id "MER4_4q35.2"; transcript_id "MER4_4q35.2"; locus "MER4_4q35.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0269"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_4q35.2b ### chr4 rmsk gene 188573146 188575550 . + . gene_id "ERVLB4_4q35.2b"; transcript_id "ERVLB4_4q35.2b"; locus "ERVLB4_4q35.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0572"; model_cov "1232"; model_pct "21.6"; chr4 rmsk exon 188573146 188573524 473 + . gene_id "ERVLB4_4q35.2b"; transcript_id "ERVLB4_4q35.2b"; locus "ERVLB4_4q35.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0572"; repClass "LTR"; repEnd "2980"; repFamily "ERVL"; repLeft "-2734"; repStart "2555"; chr4 rmsk exon 188573913 188574104 421 + . gene_id "ERVLB4_4q35.2b"; transcript_id "ERVLB4_4q35.2b"; locus "ERVLB4_4q35.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0572"; repClass "LTR"; repEnd "3573"; repFamily "ERVL"; repLeft "-2141"; repStart "3367"; chr4 rmsk exon 188574863 188575020 257 + . gene_id "ERVLB4_4q35.2b"; transcript_id "ERVLB4_4q35.2b"; locus "ERVLB4_4q35.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0572"; repClass "LTR"; repEnd "3851"; repFamily "ERVL"; repLeft "-1863"; repStart "3687"; chr4 rmsk exon 188575116 188575550 702 + . gene_id "ERVLB4_4q35.2b"; transcript_id "ERVLB4_4q35.2b"; locus "ERVLB4_4q35.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0572"; repClass "LTR"; repEnd "5003"; repFamily "ERVL"; repLeft "-711"; repStart "4566"; ### ERV316A3_4q35.2d ### chr4 rmsk gene 188915325 188916693 . - . gene_id "ERV316A3_4q35.2d"; transcript_id "ERV316A3_4q35.2d"; locus "ERV316A3_4q35.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0918"; model_cov "924"; model_pct "17.7"; chr4 rmsk exon 188915325 188915894 1214 - . gene_id "ERV316A3_4q35.2d"; transcript_id "ERV316A3_4q35.2d"; locus "ERV316A3_4q35.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0918"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "3808"; repStart "-806"; chr4 rmsk exon 188916228 188916516 912 - . gene_id "ERV316A3_4q35.2d"; transcript_id "ERV316A3_4q35.2d"; locus "ERV316A3_4q35.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0918"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2772"; repStart "-2142"; chr4 rmsk exon 188916517 188916693 308 - . gene_id "ERV316A3_4q35.2d"; transcript_id "ERV316A3_4q35.2d"; locus "ERV316A3_4q35.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0918"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "1"; repStart "-254"; ### ERV316A3_4q35.2e ### chr4 rmsk gene 188920612 188921555 . + . gene_id "ERV316A3_4q35.2e"; transcript_id "ERV316A3_4q35.2e"; locus "ERV316A3_4q35.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0919"; model_cov "606"; model_pct "11.6"; chr4 rmsk exon 188920612 188921212 1194 + . gene_id "ERV316A3_4q35.2e"; transcript_id "ERV316A3_4q35.2e"; locus "ERV316A3_4q35.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0919"; repClass "LTR"; repEnd "5072"; repFamily "ERVL"; repLeft "-154"; repStart "4466"; chr4 rmsk exon 188921343 188921555 567 + . gene_id "ERV316A3_4q35.2e"; transcript_id "ERV316A3_4q35.2e"; locus "ERV316A3_4q35.2e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0919"; repClass "LTR"; repEnd "207"; repFamily "ERVL"; repLeft "-244"; repStart "10"; ### HUERSP1_4q35.2 ### chr4 rmsk gene 188930440 188934637 . + . gene_id "HUERSP1_4q35.2"; transcript_id "HUERSP1_4q35.2"; locus "HUERSP1_4q35.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0069"; model_cov "3567"; model_pct "57.0"; chr4 rmsk exon 188930440 188933260 14510 + . gene_id "HUERSP1_4q35.2"; transcript_id "HUERSP1_4q35.2"; locus "HUERSP1_4q35.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0069"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1047"; repStart "2430"; chr4 rmsk exon 188933264 188934044 4893 + . gene_id "HUERSP1_4q35.2"; transcript_id "HUERSP1_4q35.2"; locus "HUERSP1_4q35.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0069"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5482"; chr4 rmsk exon 188934045 188934637 3947 + . gene_id "HUERSP1_4q35.2"; transcript_id "HUERSP1_4q35.2"; locus "HUERSP1_4q35.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0069"; repClass "LTR"; repEnd "586"; repFamily "ERV1"; repLeft "-105"; repStart "1"; ### MER41_4q35.2 ### chr4 rmsk gene 189108411 189110238 . + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0166"; model_cov "1794"; model_pct "30.2"; chr4 rmsk exon 189108411 189108707 785 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-60"; repFamily "ERV1"; repLeft "-6006"; repStart "-240"; chr4 rmsk exon 189108698 189108763 386 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-1429"; repFamily "ERV1"; repLeft "-7375"; repStart "-1497"; chr4 rmsk exon 189108754 189108819 364 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-1429"; repFamily "ERV1"; repLeft "-7375"; repStart "-1497"; chr4 rmsk exon 189108810 189108875 364 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-1429"; repFamily "ERV1"; repLeft "-7375"; repStart "-1497"; chr4 rmsk exon 189108866 189108931 364 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-1429"; repFamily "ERV1"; repLeft "-7375"; repStart "-1497"; chr4 rmsk exon 189108922 189108987 364 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-1429"; repFamily "ERV1"; repLeft "-7375"; repStart "-1497"; chr4 rmsk exon 189108978 189109536 3673 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "-926"; repFamily "ERV1"; repLeft "-6872"; repStart "-1497"; chr4 rmsk exon 189109546 189110238 4176 + . gene_id "MER41_4q35.2"; transcript_id "MER41_4q35.2"; locus "MER41_4q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0166"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "-4301"; repStart "942"; ### ERV316A3_4q35.2f ### chr4 rmsk gene 189143394 189144661 . - . gene_id "ERV316A3_4q35.2f"; transcript_id "ERV316A3_4q35.2f"; locus "ERV316A3_4q35.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0920"; model_cov "633"; model_pct "12.1"; chr4 rmsk exon 189143394 189143851 540 - . gene_id "ERV316A3_4q35.2f"; transcript_id "ERV316A3_4q35.2f"; locus "ERV316A3_4q35.2f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0920"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "104"; repStart "0"; chr4 rmsk exon 189144040 189144661 718 - . gene_id "ERV316A3_4q35.2f"; transcript_id "ERV316A3_4q35.2f"; locus "ERV316A3_4q35.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0920"; repClass "LTR"; repEnd "5099"; repFamily "ERVL"; repLeft "4466"; repStart "-127"; ### HERVH_4q35.2b ### chr4 rmsk gene 189479539 189485403 . - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0456"; model_cov "4932"; model_pct "63.9"; chr4 rmsk exon 189479539 189479989 3348 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4 rmsk exon 189479990 189480272 2093 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7429"; repStart "0"; chr4 rmsk exon 189480304 189480453 1000 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "5600"; repStart "-1965"; chr4 rmsk exon 189480455 189481061 2827 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4 rmsk exon 189481064 189481803 2841 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4 rmsk exon 189481798 189484953 16274 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4 rmsk exon 189484956 189485403 3451 - . gene_id "HERVH_4q35.2b"; transcript_id "HERVH_4q35.2b"; locus "HERVH_4q35.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0456"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL32_4q35.2a ### chr4 rmsk gene 189599108 189600854 . + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0017"; model_cov "1139"; model_pct "33.3"; chr4 rmsk exon 189599108 189599170 247 + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0017"; repClass "LTR"; repEnd "66"; repFamily "ERVL"; repLeft "-391"; repStart "1"; chr4 rmsk exon 189599171 189599354 898 + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0017"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-1"; repStart "271"; chr4 rmsk exon 189599364 189599462 354 + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0017"; repClass "LTR"; repEnd "110"; repFamily "ERVL"; repLeft "-3308"; repStart "12"; chr4 rmsk exon 189599733 189600415 2202 + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0017"; repClass "LTR"; repEnd "721"; repFamily "ERVL"; repLeft "-2697"; repStart "52"; chr4 rmsk exon 189600480 189600854 1107 + . gene_id "HERVL32_4q35.2a"; transcript_id "HERVL32_4q35.2a"; locus "HERVL32_4q35.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0017"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-2380"; repStart "666"; ### HERVL32_4q35.2b ### chr4 rmsk gene 189600961 189602240 . + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0019"; model_cov "829"; model_pct "24.3"; chr4 rmsk exon 189600961 189601044 430 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-2380"; repStart "955"; chr4 rmsk exon 189601056 189601407 658 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "-2107"; repStart "955"; chr4 rmsk exon 189601517 189601676 418 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "-869"; repStart "2351"; chr4 rmsk exon 189601801 189601979 477 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "3414"; repFamily "ERVL"; repLeft "-4"; repStart "3222"; chr4 rmsk exon 189601987 189602040 318 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "-407"; repStart "2"; chr4 rmsk exon 189602055 189602240 1012 + . gene_id "HERVL32_4q35.2b"; transcript_id "HERVL32_4q35.2b"; locus "HERVL32_4q35.2b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0019"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-5"; repStart "271"; ### HERVH_4q35.2c ### chr4 rmsk gene 189925901 189931855 . + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0457"; model_cov "5200"; model_pct "67.4"; chr4 rmsk exon 189925901 189926292 2457 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4 rmsk exon 189926295 189929256 18928 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4 rmsk exon 189929251 189930104 5902 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4 rmsk exon 189930107 189930289 1268 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4488"; chr4 rmsk exon 189930287 189930859 3469 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4575"; chr4 rmsk exon 189930864 189931079 1221 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4 rmsk exon 189931080 189931457 2339 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4 rmsk exon 189931458 189931855 2260 + . gene_id "HERVH_4q35.2c"; transcript_id "HERVH_4q35.2c"; locus "HERVH_4q35.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0457"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### PRIMA41_4q35.2 ### chr4 rmsk gene 189985004 189989814 . - . gene_id "PRIMA41_4q35.2"; transcript_id "PRIMA41_4q35.2"; locus "PRIMA41_4q35.2"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0057"; model_cov "4259"; model_pct "54.9"; chr4 rmsk exon 189985004 189986585 9587 - . gene_id "PRIMA41_4q35.2"; transcript_id "PRIMA41_4q35.2"; locus "PRIMA41_4q35.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0057"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4518"; repStart "-1593"; chr4 rmsk exon 189987237 189989814 9587 - . gene_id "PRIMA41_4q35.2"; transcript_id "PRIMA41_4q35.2"; locus "PRIMA41_4q35.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0057"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "1903"; repStart "-3239"; ### HML2_4q35.2 ### chr4 rmsk gene 190106259 190113546 . - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0041"; model_cov "4984"; model_pct "66.1"; chr4 rmsk exon 190106259 190107263 7790 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 190107266 190108168 5549 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "6626"; repStart "-2"; chr4 rmsk exon 190108264 190111540 23124 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "6328"; repFamily "ERVK"; repLeft "3007"; repStart "-1208"; chr4 rmsk exon 190111624 190111683 261 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "820"; repFamily "ERVK"; repLeft "761"; repStart "-6716"; chr4 rmsk exon 190111667 190111959 1729 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "401"; repStart "-6840"; chr4 rmsk exon 190112160 190112541 2323 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "402"; repFamily "ERVK"; repLeft "1"; repStart "-7134"; chr4 rmsk exon 190112542 190113546 7805 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0"; ### HML3_5p15.33a ### chr5 rmsk gene 242196 246105 . + . gene_id "HML3_5p15.33a"; transcript_id "HML3_5p15.33a"; locus "HML3_5p15.33a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0083"; model_cov "3478"; model_pct "57.8"; chr5 rmsk exon 242196 242652 3558 + . gene_id "HML3_5p15.33a"; transcript_id "HML3_5p15.33a"; locus "HML3_5p15.33a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0083"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr5 rmsk exon 242653 245882 25274 + . gene_id "HML3_5p15.33a"; transcript_id "HML3_5p15.33a"; locus "HML3_5p15.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0083"; repClass "LTR"; repEnd "3244"; repFamily "ERVK"; repLeft "-2777"; repStart "1"; chr5 rmsk exon 245874 245954 601 + . gene_id "HML3_5p15.33a"; transcript_id "HML3_5p15.33a"; locus "HML3_5p15.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0083"; repClass "LTR"; repEnd "3247"; repFamily "ERVK"; repLeft "-2774"; repStart "3166"; chr5 rmsk exon 245951 246105 1092 + . gene_id "HML3_5p15.33a"; transcript_id "HML3_5p15.33a"; locus "HML3_5p15.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0083"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "-2684"; repStart "3183"; ### HML3_5p15.33b ### chr5 rmsk gene 246171 249795 . + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0084"; model_cov "3214"; model_pct "53.4"; chr5 rmsk exon 246171 246239 376 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "-2684"; repStart "3269"; chr5 rmsk exon 246217 246306 417 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "-2684"; repStart "3245"; chr5 rmsk exon 246304 246369 431 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3333"; repFamily "ERVK"; repLeft "-2688"; repStart "3268"; chr5 rmsk exon 246371 246440 401 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "-2684"; repStart "3268"; chr5 rmsk exon 246438 246503 422 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3333"; repFamily "ERVK"; repLeft "-2688"; repStart "3268"; chr5 rmsk exon 246505 246678 1275 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "3441"; repFamily "ERVK"; repLeft "-2580"; repStart "3268"; chr5 rmsk exon 246675 249305 20695 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "6003"; repFamily "ERVK"; repLeft "-18"; repStart "3321"; chr5 rmsk exon 249326 249795 3648 + . gene_id "HML3_5p15.33b"; transcript_id "HML3_5p15.33b"; locus "HML3_5p15.33b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0084"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HERVH_5p15.33 ### chr5 rmsk gene 702471 708501 . + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0458"; model_cov "4900"; model_pct "63.5"; chr5 rmsk exon 702471 702899 3438 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 702902 706188 15214 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr5 rmsk exon 706183 706330 715 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 706330 706821 3028 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr5 rmsk exon 706824 707478 3678 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 707480 707696 1313 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 707695 708074 2307 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 708075 708501 3355 + . gene_id "HERVH_5p15.33"; transcript_id "HERVH_5p15.33"; locus "HERVH_5p15.33"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0458"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_5p15.33a ### chr5 rmsk gene 1448685 1450102 . + . gene_id "ERVLE_5p15.33a"; transcript_id "ERVLE_5p15.33a"; locus "ERVLE_5p15.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1266"; model_cov "972"; model_pct "17.2"; chr5 rmsk exon 1448685 1449244 1490 + . gene_id "ERVLE_5p15.33a"; transcript_id "ERVLE_5p15.33a"; locus "ERVLE_5p15.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1266"; repClass "LTR"; repEnd "3075"; repFamily "ERVL"; repLeft "-2592"; repStart "2510"; chr5 rmsk exon 1449441 1449499 1490 + . gene_id "ERVLE_5p15.33a"; transcript_id "ERVLE_5p15.33a"; locus "ERVLE_5p15.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1266"; repClass "LTR"; repEnd "3134"; repFamily "ERVL"; repLeft "-2533"; repStart "3076"; chr5 rmsk exon 1449604 1449752 388 + . gene_id "ERVLE_5p15.33a"; transcript_id "ERVLE_5p15.33a"; locus "ERVLE_5p15.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1266"; repClass "LTR"; repEnd "3456"; repFamily "ERVL"; repLeft "-2211"; repStart "3294"; chr5 rmsk exon 1449927 1450102 474 + . gene_id "ERVLE_5p15.33a"; transcript_id "ERVLE_5p15.33a"; locus "ERVLE_5p15.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1266"; repClass "LTR"; repEnd "3848"; repFamily "ERVL"; repLeft "-1819"; repStart "3661"; ### ERVLE_5p15.33b ### chr5 rmsk gene 1457100 1458728 . + . gene_id "ERVLE_5p15.33b"; transcript_id "ERVLE_5p15.33b"; locus "ERVLE_5p15.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1267"; model_cov "1294"; model_pct "22.8"; chr5 rmsk exon 1457100 1457787 1250 + . gene_id "ERVLE_5p15.33b"; transcript_id "ERVLE_5p15.33b"; locus "ERVLE_5p15.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1267"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "-929"; repStart "3903"; chr5 rmsk exon 1458205 1458417 519 + . gene_id "ERVLE_5p15.33b"; transcript_id "ERVLE_5p15.33b"; locus "ERVLE_5p15.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1267"; repClass "LTR"; repEnd "4961"; repFamily "ERVL"; repLeft "-706"; repStart "4745"; chr5 rmsk exon 1458480 1458728 545 + . gene_id "ERVLE_5p15.33b"; transcript_id "ERVLE_5p15.33b"; locus "ERVLE_5p15.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1267"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "-325"; repStart "5099"; ### HML3_5p15.33c ### chr5 rmsk gene 1577862 1580973 . - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0085"; model_cov "2669"; model_pct "44.3"; chr5 rmsk exon 1577862 1578332 3516 - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0085"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 1578347 1579846 11679 - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0085"; repClass "LTR"; repEnd "6004"; repFamily "ERVK"; repLeft "4477"; repStart "-17"; chr5 rmsk exon 1579846 1580839 7885 - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0085"; repClass "LTR"; repEnd "4270"; repFamily "ERVK"; repLeft "3268"; repStart "-1751"; chr5 rmsk exon 1580835 1580906 493 - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0085"; repClass "LTR"; repEnd "3339"; repFamily "ERVK"; repLeft "3268"; repStart "-2682"; chr5 rmsk exon 1580904 1580973 429 - . gene_id "HML3_5p15.33c"; transcript_id "HML3_5p15.33c"; locus "HML3_5p15.33c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0085"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; ### HML3_5p15.33d ### chr5 rmsk gene 1581038 1585387 . - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0086"; model_cov "4010"; model_pct "66.6"; chr5 rmsk exon 1581038 1581107 444 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581105 1581174 455 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581172 1581241 454 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581239 1581308 437 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581306 1581387 414 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3251"; repStart "-2684"; chr5 rmsk exon 1581373 1581442 319 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581440 1581509 424 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581507 1581576 421 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "3268"; repStart "-2684"; chr5 rmsk exon 1581574 1584921 25680 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "3337"; repFamily "ERVK"; repLeft "72"; repStart "-2684"; chr5 rmsk exon 1584921 1585091 1075 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "177"; repFamily "ERVK"; repLeft "1"; repStart "-5844"; chr5 rmsk exon 1585092 1585387 2152 - . gene_id "HML3_5p15.33d"; transcript_id "HML3_5p15.33d"; locus "HML3_5p15.33d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0086"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "178"; repStart "0"; ### ERVLB4_5p15.33a ### chr5 rmsk gene 1860328 1865142 . - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0573"; model_cov "1130"; model_pct "19.8"; chr5 rmsk exon 1860328 1860465 299 - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0573"; repClass "LTR"; repEnd "3342"; repFamily "ERVL"; repLeft "3214"; repStart "-2372"; chr5 rmsk exon 1862731 1863283 622 - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0573"; repClass "LTR"; repEnd "2219"; repFamily "ERVL"; repLeft "1633"; repStart "-3495"; chr5 rmsk exon 1864201 1864409 326 - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0573"; repClass "LTR"; repEnd "1619"; repFamily "ERVL"; repLeft "1399"; repStart "-4095"; chr5 rmsk exon 1864712 1864843 550 - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0573"; repClass "LTR"; repEnd "1016"; repFamily "ERVL"; repLeft "885"; repStart "-4698"; chr5 rmsk exon 1865078 1865142 271 - . gene_id "ERVLB4_5p15.33a"; transcript_id "ERVLB4_5p15.33a"; locus "ERVLB4_5p15.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0573"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "423"; repStart "-5226"; ### HERVL_5p15.33a ### chr5 rmsk gene 2243576 2246102 . + . gene_id "HERVL_5p15.33a"; transcript_id "HERVL_5p15.33a"; locus "HERVL_5p15.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0459"; model_cov "2105"; model_pct "37.2"; chr5 rmsk exon 2243576 2245692 16086 + . gene_id "HERVL_5p15.33a"; transcript_id "HERVL_5p15.33a"; locus "HERVL_5p15.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0459"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "3547"; chr5 rmsk exon 2245699 2246102 3157 + . gene_id "HERVL_5p15.33a"; transcript_id "HERVL_5p15.33a"; locus "HERVL_5p15.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0459"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "5"; ### ERV316A3_5p15.33 ### chr5 rmsk gene 3217461 3219555 . + . gene_id "ERV316A3_5p15.33"; transcript_id "ERV316A3_5p15.33"; locus "ERV316A3_5p15.33"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0921"; model_cov "1466"; model_pct "28.1"; chr5 rmsk exon 3217461 3217617 327 + . gene_id "ERV316A3_5p15.33"; transcript_id "ERV316A3_5p15.33"; locus "ERV316A3_5p15.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0921"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-4560"; repStart "509"; chr5 rmsk exon 3217718 3218073 842 + . gene_id "ERV316A3_5p15.33"; transcript_id "ERV316A3_5p15.33"; locus "ERV316A3_5p15.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0921"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "-4062"; repStart "784"; chr5 rmsk exon 3218501 3218563 320 + . gene_id "ERV316A3_5p15.33"; transcript_id "ERV316A3_5p15.33"; locus "ERV316A3_5p15.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0921"; repClass "LTR"; repEnd "1669"; repFamily "ERVL"; repLeft "-3557"; repStart "1607"; chr5 rmsk exon 3218701 3219555 967 + . gene_id "ERV316A3_5p15.33"; transcript_id "ERV316A3_5p15.33"; locus "ERV316A3_5p15.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0921"; repClass "LTR"; repEnd "4815"; repFamily "ERVL"; repLeft "-411"; repStart "3948"; ### ERVL_5p15.33 ### chr5 rmsk gene 3242498 3243953 . - . gene_id "ERVL_5p15.33"; transcript_id "ERVL_5p15.33"; locus "ERVL_5p15.33"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0127"; model_cov "886"; model_pct "15.4"; chr5 rmsk exon 3242498 3243110 1202 - . gene_id "ERVL_5p15.33"; transcript_id "ERVL_5p15.33"; locus "ERVL_5p15.33"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0127"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "3"; repStart "-36"; chr5 rmsk exon 3243111 3243953 4818 - . gene_id "ERVL_5p15.33"; transcript_id "ERVL_5p15.33"; locus "ERVL_5p15.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0127"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4871"; repStart "0"; ### ERVLB4_5p15.33b ### chr5 rmsk gene 3294398 3295969 . + . gene_id "ERVLB4_5p15.33b"; transcript_id "ERVLB4_5p15.33b"; locus "ERVLB4_5p15.33b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0574"; model_cov "813"; model_pct "14.2"; chr5 rmsk exon 3294398 3294688 858 + . gene_id "ERVLB4_5p15.33b"; transcript_id "ERVLB4_5p15.33b"; locus "ERVLB4_5p15.33b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0574"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "-50"; repStart "37"; chr5 rmsk exon 3294849 3294944 430 + . gene_id "ERVLB4_5p15.33b"; transcript_id "ERVLB4_5p15.33b"; locus "ERVLB4_5p15.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0574"; repClass "LTR"; repEnd "87"; repFamily "ERVL"; repLeft "-5627"; repStart "1"; chr5 rmsk exon 3295040 3295486 1543 + . gene_id "ERVLB4_5p15.33b"; transcript_id "ERVLB4_5p15.33b"; locus "ERVLB4_5p15.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0574"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-5065"; repStart "187"; chr5 rmsk exon 3295716 3295969 783 + . gene_id "ERVLB4_5p15.33b"; transcript_id "ERVLB4_5p15.33b"; locus "ERVLB4_5p15.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0574"; repClass "LTR"; repEnd "970"; repFamily "ERVL"; repLeft "-4744"; repStart "705"; ### HERVL_5p15.33b ### chr5 rmsk gene 3847418 3848141 . + . gene_id "HERVL_5p15.33b"; transcript_id "HERVL_5p15.33b"; locus "HERVL_5p15.33b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0460"; model_cov "723"; model_pct "12.8"; chr5 rmsk exon 3847418 3848141 5863 + . gene_id "HERVL_5p15.33b"; transcript_id "HERVL_5p15.33b"; locus "HERVL_5p15.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0460"; repClass "LTR"; repEnd "4017"; repFamily "ERVL"; repLeft "-1637"; repStart "3294"; ### HERVL_5p15.33c ### chr5 rmsk gene 3947660 3954207 . - . gene_id "HERVL_5p15.33c"; transcript_id "HERVL_5p15.33c"; locus "HERVL_5p15.33c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0461"; model_cov "5651"; model_pct "99.9"; chr5 rmsk exon 3947660 3948099 2972 - . gene_id "HERVL_5p15.33c"; transcript_id "HERVL_5p15.33c"; locus "HERVL_5p15.33c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0461"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 3948100 3953235 40667 - . gene_id "HERVL_5p15.33c"; transcript_id "HERVL_5p15.33c"; locus "HERVL_5p15.33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0461"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "500"; repStart "0"; chr5 rmsk exon 3953272 3953766 40667 - . gene_id "HERVL_5p15.33c"; transcript_id "HERVL_5p15.33c"; locus "HERVL_5p15.33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0461"; repClass "LTR"; repEnd "499"; repFamily "ERVL"; repLeft "2"; repStart "-5155"; chr5 rmsk exon 3953767 3954207 2842 - . gene_id "HERVL_5p15.33c"; transcript_id "HERVL_5p15.33c"; locus "HERVL_5p15.33c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0461"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_5p15.32a ### chr5 rmsk gene 4458896 4465816 . + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0462"; model_cov "5731"; model_pct "100.0"; chr5 rmsk exon 4458896 4459290 3132 + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0462"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr5 rmsk exon 4459443 4464212 36048 + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0462"; repClass "LTR"; repEnd "4774"; repFamily "ERVL"; repLeft "-880"; repStart "1"; chr5 rmsk exon 4464290 4465252 7221 + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0462"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4696"; chr5 rmsk exon 4465253 4465702 2916 + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0462"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr5 rmsk exon 4465750 4465816 406 + . gene_id "HERVL_5p15.32a"; transcript_id "HERVL_5p15.32a"; locus "HERVL_5p15.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0462"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "380"; ### ERV316A3_5p15.32a ### chr5 rmsk gene 4534519 4540889 . + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0923"; model_cov "4078"; model_pct "78.0"; chr5 rmsk exon 4534519 4534701 345 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-4697"; repStart "333"; chr5 rmsk exon 4536147 4537190 3871 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "1883"; repFamily "ERVL"; repLeft "-3343"; repStart "809"; chr5 rmsk exon 4537819 4539155 3871 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "-2233"; repStart "1443"; chr5 rmsk exon 4539193 4540168 1525 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "-864"; repStart "3275"; chr5 rmsk exon 4540334 4540495 510 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "4760"; repFamily "ERVL"; repLeft "-466"; repStart "4589"; chr5 rmsk exon 4540774 4540889 321 + . gene_id "ERV316A3_5p15.32a"; transcript_id "ERV316A3_5p15.32a"; locus "ERV316A3_5p15.32a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0923"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-78"; repStart "257"; ### ERV316A3_5p15.32b ### chr5 rmsk gene 4783978 4786072 . + . gene_id "ERV316A3_5p15.32b"; transcript_id "ERV316A3_5p15.32b"; locus "ERV316A3_5p15.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0924"; model_cov "694"; model_pct "13.3"; chr5 rmsk exon 4783978 4784101 307 + . gene_id "ERV316A3_5p15.32b"; transcript_id "ERV316A3_5p15.32b"; locus "ERV316A3_5p15.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0924"; repClass "LTR"; repEnd "3320"; repFamily "ERVL"; repLeft "-1906"; repStart "3203"; chr5 rmsk exon 4785196 4785770 1717 + . gene_id "ERV316A3_5p15.32b"; transcript_id "ERV316A3_5p15.32b"; locus "ERV316A3_5p15.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0924"; repClass "LTR"; repEnd "4393"; repFamily "ERVL"; repLeft "-833"; repStart "3816"; chr5 rmsk exon 4785879 4786072 339 + . gene_id "ERV316A3_5p15.32b"; transcript_id "ERV316A3_5p15.32b"; locus "ERV316A3_5p15.32b"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0924"; repClass "LTR"; repEnd "306"; repFamily "ERVL"; repLeft "-189"; repStart "83"; ### ERV316A3_5p15.32c ### chr5 rmsk gene 5032844 5034464 . - . gene_id "ERV316A3_5p15.32c"; transcript_id "ERV316A3_5p15.32c"; locus "ERV316A3_5p15.32c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0925"; model_cov "565"; model_pct "10.8"; chr5 rmsk exon 5032844 5033262 1220 - . gene_id "ERV316A3_5p15.32c"; transcript_id "ERV316A3_5p15.32c"; locus "ERV316A3_5p15.32c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0925"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "7"; repStart "-5"; chr5 rmsk exon 5033316 5033498 279 - . gene_id "ERV316A3_5p15.32c"; transcript_id "ERV316A3_5p15.32c"; locus "ERV316A3_5p15.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0925"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4990"; repStart "-50"; chr5 rmsk exon 5034088 5034464 704 - . gene_id "ERV316A3_5p15.32c"; transcript_id "ERV316A3_5p15.32c"; locus "ERV316A3_5p15.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0925"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4096"; repStart "-751"; ### HERVL_5p15.32b ### chr5 rmsk gene 5090379 5091825 . - . gene_id "HERVL_5p15.32b"; transcript_id "HERVL_5p15.32b"; locus "HERVL_5p15.32b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0464"; model_cov "898"; model_pct "15.9"; chr5 rmsk exon 5090379 5090926 2063 - . gene_id "HERVL_5p15.32b"; transcript_id "HERVL_5p15.32b"; locus "HERVL_5p15.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0464"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr5 rmsk exon 5090927 5091825 6442 - . gene_id "HERVL_5p15.32b"; transcript_id "HERVL_5p15.32b"; locus "HERVL_5p15.32b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0464"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4756"; repStart "0"; ### ERVLE_5p15.32a ### chr5 rmsk gene 5403904 5406675 . - . gene_id "ERVLE_5p15.32a"; transcript_id "ERVLE_5p15.32a"; locus "ERVLE_5p15.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1271"; model_cov "1461"; model_pct "25.8"; chr5 rmsk exon 5403904 5404511 1324 - . gene_id "ERVLE_5p15.32a"; transcript_id "ERVLE_5p15.32a"; locus "ERVLE_5p15.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1271"; repClass "LTR"; repEnd "4169"; repFamily "ERVL"; repLeft "3536"; repStart "-1498"; chr5 rmsk exon 5405218 5405729 471 - . gene_id "ERVLE_5p15.32a"; transcript_id "ERVLE_5p15.32a"; locus "ERVLE_5p15.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1271"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "2572"; repStart "-2616"; chr5 rmsk exon 5406338 5406675 658 - . gene_id "ERVLE_5p15.32a"; transcript_id "ERVLE_5p15.32a"; locus "ERVLE_5p15.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1271"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "5"; repStart "-5313"; ### HERVH_5p15.32 ### chr5 rmsk gene 5515523 5521164 . + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0459"; model_cov "4705"; model_pct "61.0"; chr5 rmsk exon 5515523 5515972 3505 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 5515975 5518946 20503 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr5 rmsk exon 5518941 5519088 814 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 5519079 5519578 3320 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 5519581 5520243 4479 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 5520245 5520393 968 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1965"; repStart "5600"; chr5 rmsk exon 5520425 5520682 1846 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "7688"; repFamily "ERV1"; repLeft "-25"; repStart "7429"; chr5 rmsk exon 5520713 5521164 3485 + . gene_id "HERVH_5p15.32"; transcript_id "HERVH_5p15.32"; locus "HERVH_5p15.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0459"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5p15.32d ### chr5 rmsk gene 5598492 5601157 . - . gene_id "ERV316A3_5p15.32d"; transcript_id "ERV316A3_5p15.32d"; locus "ERV316A3_5p15.32d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0926"; model_cov "1498"; model_pct "28.7"; chr5 rmsk exon 5598492 5598950 1041 - . gene_id "ERV316A3_5p15.32d"; transcript_id "ERV316A3_5p15.32d"; locus "ERV316A3_5p15.32d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0926"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr5 rmsk exon 5599027 5600429 1622 - . gene_id "ERV316A3_5p15.32d"; transcript_id "ERV316A3_5p15.32d"; locus "ERV316A3_5p15.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0926"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "3285"; repStart "-443"; chr5 rmsk exon 5600994 5601157 744 - . gene_id "ERV316A3_5p15.32d"; transcript_id "ERV316A3_5p15.32d"; locus "ERV316A3_5p15.32d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0926"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "289"; repStart "-1"; ### MER61_5p15.32 ### chr5 rmsk gene 5694482 5699708 . + . gene_id "MER61_5p15.32"; transcript_id "MER61_5p15.32"; locus "MER61_5p15.32"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0147"; model_cov "5215"; model_pct "100.0"; chr5 rmsk exon 5694482 5694823 1756 + . gene_id "MER61_5p15.32"; transcript_id "MER61_5p15.32"; locus "MER61_5p15.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0147"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 5694824 5699366 26128 + . gene_id "MER61_5p15.32"; transcript_id "MER61_5p15.32"; locus "MER61_5p15.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0147"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr5 rmsk exon 5699367 5699708 1874 + . gene_id "MER61_5p15.32"; transcript_id "MER61_5p15.32"; locus "MER61_5p15.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0147"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5p15.32b ### chr5 rmsk gene 5738978 5740902 . - . gene_id "ERVLE_5p15.32b"; transcript_id "ERVLE_5p15.32b"; locus "ERVLE_5p15.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1272"; model_cov "2016"; model_pct "35.6"; chr5 rmsk exon 5738978 5739296 549 - . gene_id "ERVLE_5p15.32b"; transcript_id "ERVLE_5p15.32b"; locus "ERVLE_5p15.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1272"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5326"; repStart "0"; chr5 rmsk exon 5739286 5739587 263 - . gene_id "ERVLE_5p15.32b"; transcript_id "ERVLE_5p15.32b"; locus "ERVLE_5p15.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1272"; repClass "LTR"; repEnd "5412"; repFamily "ERVL"; repLeft "5086"; repStart "-255"; chr5 rmsk exon 5739691 5740902 2294 - . gene_id "ERVLE_5p15.32b"; transcript_id "ERVLE_5p15.32b"; locus "ERVLE_5p15.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1272"; repClass "LTR"; repEnd "4401"; repFamily "ERVL"; repLeft "3052"; repStart "-1266"; ### HERVL_5p15.32c ### chr5 rmsk gene 6150507 6153488 . - . gene_id "HERVL_5p15.32c"; transcript_id "HERVL_5p15.32c"; locus "HERVL_5p15.32c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0465"; model_cov "3264"; model_pct "57.7"; chr5 rmsk exon 6150507 6153488 14144 - . gene_id "HERVL_5p15.32c"; transcript_id "HERVL_5p15.32c"; locus "HERVL_5p15.32c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0465"; repClass "LTR"; repEnd "5304"; repFamily "ERVL"; repLeft "2040"; repStart "-350"; ### MER101_5p15.31a ### chr5 rmsk gene 6510975 6515917 . - . gene_id "MER101_5p15.31a"; transcript_id "MER101_5p15.31a"; locus "MER101_5p15.31a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0136"; model_cov "4058"; model_pct "61.1"; chr5 rmsk exon 6510975 6511338 1251 - . gene_id "MER101_5p15.31a"; transcript_id "MER101_5p15.31a"; locus "MER101_5p15.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0136"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6270"; repStart "0"; chr5 rmsk exon 6512356 6514592 3630 - . gene_id "MER101_5p15.31a"; transcript_id "MER101_5p15.31a"; locus "MER101_5p15.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0136"; repClass "LTR"; repEnd "5615"; repFamily "ERV1"; repLeft "2795"; repStart "-1024"; chr5 rmsk exon 6514722 6515391 1379 - . gene_id "MER101_5p15.31a"; transcript_id "MER101_5p15.31a"; locus "MER101_5p15.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0136"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "2070"; repStart "-3874"; chr5 rmsk exon 6515738 6515917 1379 - . gene_id "MER101_5p15.31a"; transcript_id "MER101_5p15.31a"; locus "MER101_5p15.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0136"; repClass "LTR"; repEnd "2069"; repFamily "ERV1"; repLeft "1895"; repStart "-4570"; ### MER101_5p15.31b ### chr5 rmsk gene 6516142 6516956 . - . gene_id "MER101_5p15.31b"; transcript_id "MER101_5p15.31b"; locus "MER101_5p15.31b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0137"; model_cov "1396"; model_pct "21.0"; chr5 rmsk exon 6516142 6516956 1379 - . gene_id "MER101_5p15.31b"; transcript_id "MER101_5p15.31b"; locus "MER101_5p15.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0137"; repClass "LTR"; repEnd "3889"; repFamily "ERV1"; repLeft "2493"; repStart "-2750"; ### ERVLE_5p15.31a ### chr5 rmsk gene 6680307 6681281 . + . gene_id "ERVLE_5p15.31a"; transcript_id "ERVLE_5p15.31a"; locus "ERVLE_5p15.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1274"; model_cov "955"; model_pct "16.9"; chr5 rmsk exon 6680307 6681281 2057 + . gene_id "ERVLE_5p15.31a"; transcript_id "ERVLE_5p15.31a"; locus "ERVLE_5p15.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1274"; repClass "LTR"; repEnd "2704"; repFamily "ERVL"; repLeft "-2963"; repStart "1749"; ### HUERSP2_5p15.31 ### chr5 rmsk gene 7018935 7023458 . - . gene_id "HUERSP2_5p15.31"; transcript_id "HUERSP2_5p15.31"; locus "HUERSP2_5p15.31"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0050"; model_cov "2998"; model_pct "97.1"; chr5 rmsk exon 7018935 7019711 4586 - . gene_id "HUERSP2_5p15.31"; transcript_id "HUERSP2_5p15.31"; locus "HUERSP2_5p15.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0050"; repClass "LTR"; repEnd "836"; repFamily "ERV1"; repLeft "41"; repStart "-1"; chr5 rmsk exon 7019712 7022508 16482 - . gene_id "HUERSP2_5p15.31"; transcript_id "HUERSP2_5p15.31"; locus "HUERSP2_5p15.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0050"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "213"; repStart "-3"; chr5 rmsk exon 7022532 7022662 570 - . gene_id "HUERSP2_5p15.31"; transcript_id "HUERSP2_5p15.31"; locus "HUERSP2_5p15.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0050"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "1"; repStart "-2961"; chr5 rmsk exon 7022665 7023458 4979 - . gene_id "HUERSP2_5p15.31"; transcript_id "HUERSP2_5p15.31"; locus "HUERSP2_5p15.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0050"; repClass "LTR"; repEnd "835"; repFamily "ERV1"; repLeft "44"; repStart "-2"; ### MER4_5p15.31 ### chr5 rmsk gene 7030305 7033146 . - . gene_id "MER4_5p15.31"; transcript_id "MER4_5p15.31"; locus "MER4_5p15.31"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0270"; model_cov "2469"; model_pct "37.4"; chr5 rmsk exon 7030305 7031607 10778 - . gene_id "MER4_5p15.31"; transcript_id "MER4_5p15.31"; locus "MER4_5p15.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0270"; repClass "LTR"; repEnd "2472"; repFamily "ERV1"; repLeft "1113"; repStart "-4126"; chr5 rmsk exon 7031675 7032708 10778 - . gene_id "MER4_5p15.31"; transcript_id "MER4_5p15.31"; locus "MER4_5p15.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0270"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "2"; repStart "-5486"; chr5 rmsk exon 7032712 7033146 2941 - . gene_id "MER4_5p15.31"; transcript_id "MER4_5p15.31"; locus "MER4_5p15.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0270"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_5p15.31a ### chr5 rmsk gene 7055005 7063741 . - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0460"; model_cov "6771"; model_pct "87.8"; chr5 rmsk exon 7055005 7055438 2498 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 7055439 7055742 1942 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7415"; repStart "0"; chr5 rmsk exon 7055743 7056189 2642 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "7579"; repFamily "ERV1"; repLeft "7157"; repStart "-134"; chr5 rmsk exon 7056160 7056240 318 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "6043"; repFamily "ERV1"; repLeft "5959"; repStart "-1670"; chr5 rmsk exon 7057598 7063332 34684 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "5968"; repFamily "ERV1"; repLeft "1"; repStart "-1745"; chr5 rmsk exon 7063333 7063741 2398 - . gene_id "HERVH_5p15.31a"; transcript_id "HERVH_5p15.31a"; locus "HERVH_5p15.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0460"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_5p15.31b ### chr5 rmsk gene 7263580 7269331 . + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0461"; model_cov "4906"; model_pct "63.6"; chr5 rmsk exon 7263580 7264028 3498 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 7264031 7266988 19647 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr5 rmsk exon 7266983 7267129 846 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 7267120 7267623 3199 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 7267626 7268288 4050 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 7268290 7268505 1242 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 7268506 7268883 2397 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 7268884 7269331 3641 + . gene_id "HERVH_5p15.31b"; transcript_id "HERVH_5p15.31b"; locus "HERVH_5p15.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0461"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5p15.31 ### chr5 rmsk gene 7879635 7882319 . - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0928"; model_cov "1804"; model_pct "34.5"; chr5 rmsk exon 7879635 7879758 585 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "276"; repStart "-53"; chr5 rmsk exon 7879795 7880745 2476 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "2995"; repFamily "ERVL"; repLeft "2008"; repStart "-2231"; chr5 rmsk exon 7880765 7881056 544 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "1939"; repFamily "ERVL"; repLeft "1647"; repStart "-3287"; chr5 rmsk exon 7881175 7881529 627 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "1185"; repFamily "ERVL"; repLeft "809"; repStart "-4041"; chr5 rmsk exon 7881899 7882033 277 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "231"; repStart "-4846"; chr5 rmsk exon 7882068 7882319 1105 - . gene_id "ERV316A3_5p15.31"; transcript_id "ERV316A3_5p15.31"; locus "ERV316A3_5p15.31"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0928"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "138"; repStart "-55"; ### HERVH_5p15.31c ### chr5 rmsk gene 8414064 8416549 . + . gene_id "HERVH_5p15.31c"; transcript_id "HERVH_5p15.31c"; locus "HERVH_5p15.31c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0462"; model_cov "2046"; model_pct "26.5"; chr5 rmsk exon 8414064 8414492 2594 + . gene_id "HERVH_5p15.31c"; transcript_id "HERVH_5p15.31c"; locus "HERVH_5p15.31c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0462"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 8414493 8416549 3281 + . gene_id "HERVH_5p15.31c"; transcript_id "HERVH_5p15.31c"; locus "HERVH_5p15.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0462"; repClass "LTR"; repEnd "2047"; repFamily "ERV1"; repLeft "-5666"; repStart "1"; ### ERVLE_5p15.31b ### chr5 rmsk gene 8449764 8451822 . + . gene_id "ERVLE_5p15.31b"; transcript_id "ERVLE_5p15.31b"; locus "ERVLE_5p15.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1277"; model_cov "1735"; model_pct "30.6"; chr5 rmsk exon 8449764 8450032 623 + . gene_id "ERVLE_5p15.31b"; transcript_id "ERVLE_5p15.31b"; locus "ERVLE_5p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1277"; repClass "LTR"; repEnd "1861"; repFamily "ERVL"; repLeft "-3806"; repStart "1575"; chr5 rmsk exon 8450403 8450920 1537 + . gene_id "ERVLE_5p15.31b"; transcript_id "ERVLE_5p15.31b"; locus "ERVLE_5p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1277"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "-2817"; repStart "2311"; chr5 rmsk exon 8450944 8451822 2445 + . gene_id "ERVLE_5p15.31b"; transcript_id "ERVLE_5p15.31b"; locus "ERVLE_5p15.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1277"; repClass "LTR"; repEnd "3870"; repFamily "ERVL"; repLeft "-1797"; repStart "2960"; ### PRIMA4_5p15.31 ### chr5 rmsk gene 8482076 8483627 . + . gene_id "PRIMA4_5p15.31"; transcript_id "PRIMA4_5p15.31"; locus "PRIMA4_5p15.31"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0071"; model_cov "2380"; model_pct "28.8"; chr5 rmsk exon 8482076 8483627 699 + . gene_id "PRIMA4_5p15.31"; transcript_id "PRIMA4_5p15.31"; locus "PRIMA4_5p15.31"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0071"; repClass "LTR"; repEnd "4920"; repFamily "ERV1"; repLeft "-3350"; repStart "2540"; ### ERVLB4_5p15.31 ### chr5 rmsk gene 8662542 8668668 . + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0577"; model_cov "3015"; model_pct "52.8"; chr5 rmsk exon 8662542 8662770 3053 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "242"; repFamily "ERVL"; repLeft "-5472"; repStart "2"; chr5 rmsk exon 8662771 8663334 1817 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 8663335 8663347 3053 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "-5467"; repStart "243"; chr5 rmsk exon 8663768 8664264 3053 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "-4932"; repStart "248"; chr5 rmsk exon 8664339 8665663 3561 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "2360"; repFamily "ERVL"; repLeft "-3354"; repStart "951"; chr5 rmsk exon 8667847 8668277 2150 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "2797"; repFamily "ERVL"; repLeft "-2917"; repStart "2359"; chr5 rmsk exon 8668276 8668668 2278 + . gene_id "ERVLB4_5p15.31"; transcript_id "ERVLB4_5p15.31"; locus "ERVLB4_5p15.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0577"; repClass "LTR"; repEnd "5386"; repFamily "ERVL"; repLeft "-328"; repStart "4996"; ### HERVL_5p15.31 ### chr5 rmsk gene 8738343 8740271 . - . gene_id "HERVL_5p15.31"; transcript_id "HERVL_5p15.31"; locus "HERVL_5p15.31"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0466"; model_cov "1942"; model_pct "34.3"; chr5 rmsk exon 8738343 8740271 14308 - . gene_id "HERVL_5p15.31"; transcript_id "HERVL_5p15.31"; locus "HERVL_5p15.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0466"; repClass "LTR"; repEnd "5310"; repFamily "ERVL"; repLeft "3368"; repStart "-344"; ### ERVLE_5p15.31c ### chr5 rmsk gene 8894638 8896735 . + . gene_id "ERVLE_5p15.31c"; transcript_id "ERVLE_5p15.31c"; locus "ERVLE_5p15.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1278"; model_cov "1205"; model_pct "21.3"; chr5 rmsk exon 8894638 8894847 779 + . gene_id "ERVLE_5p15.31c"; transcript_id "ERVLE_5p15.31c"; locus "ERVLE_5p15.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1278"; repClass "LTR"; repEnd "3653"; repFamily "ERVL"; repLeft "-2014"; repStart "3443"; chr5 rmsk exon 8895817 8896735 2381 + . gene_id "ERVLE_5p15.31c"; transcript_id "ERVLE_5p15.31c"; locus "ERVLE_5p15.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1278"; repClass "LTR"; repEnd "5277"; repFamily "ERVL"; repLeft "-390"; repStart "4282"; ### HERVH_5p15.31d ### chr5 rmsk gene 8998372 9002474 . - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0463"; model_cov "3675"; model_pct "47.6"; chr5 rmsk exon 8998372 8998768 2266 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr5 rmsk exon 8998769 8999145 2378 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 8999146 8999361 1389 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 8999363 9000000 4306 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4512"; repStart "-2564"; chr5 rmsk exon 9000027 9000880 6390 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr5 rmsk exon 9000867 9002474 10968 - . gene_id "HERVH_5p15.31d"; transcript_id "HERVH_5p15.31d"; locus "HERVH_5p15.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0463"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1415"; repStart "-4721"; ### HERVH_5p15.31e ### chr5 rmsk gene 9007788 9009557 . - . gene_id "HERVH_5p15.31e"; transcript_id "HERVH_5p15.31e"; locus "HERVH_5p15.31e"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0464"; model_cov "1752"; model_pct "22.7"; chr5 rmsk exon 9007788 9009270 5531 - . gene_id "HERVH_5p15.31e"; transcript_id "HERVH_5p15.31e"; locus "HERVH_5p15.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0464"; repClass "LTR"; repEnd "1430"; repFamily "ERV1"; repLeft "1"; repStart "-6283"; chr5 rmsk exon 9009293 9009557 1709 - . gene_id "HERVH_5p15.31e"; transcript_id "HERVH_5p15.31e"; locus "HERVH_5p15.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0464"; repClass "LTR"; repEnd "760"; repFamily "ERV1"; repLeft "437"; repStart "-6953"; ### ERVLE_5p15.31d ### chr5 rmsk gene 9836732 9837508 . + . gene_id "ERVLE_5p15.31d"; transcript_id "ERVLE_5p15.31d"; locus "ERVLE_5p15.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1279"; model_cov "877"; model_pct "15.5"; chr5 rmsk exon 9836732 9837508 1231 + . gene_id "ERVLE_5p15.31d"; transcript_id "ERVLE_5p15.31d"; locus "ERVLE_5p15.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1279"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "-4052"; repStart "738"; ### ERVLE_5p15.2a ### chr5 rmsk gene 10112043 10113228 . + . gene_id "ERVLE_5p15.2a"; transcript_id "ERVLE_5p15.2a"; locus "ERVLE_5p15.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1280"; model_cov "827"; model_pct "14.6"; chr5 rmsk exon 10112043 10112519 1210 + . gene_id "ERVLE_5p15.2a"; transcript_id "ERVLE_5p15.2a"; locus "ERVLE_5p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1280"; repClass "LTR"; repEnd "4792"; repFamily "ERVL"; repLeft "-875"; repStart "4323"; chr5 rmsk exon 10112873 10112990 1210 + . gene_id "ERVLE_5p15.2a"; transcript_id "ERVLE_5p15.2a"; locus "ERVLE_5p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1280"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "-746"; repStart "4793"; chr5 rmsk exon 10113008 10113228 361 + . gene_id "ERVLE_5p15.2a"; transcript_id "ERVLE_5p15.2a"; locus "ERVLE_5p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1280"; repClass "LTR"; repEnd "5229"; repFamily "ERVL"; repLeft "-438"; repStart "4999"; ### HERVL_5p15.2a ### chr5 rmsk gene 10716384 10720094 . + . gene_id "HERVL_5p15.2a"; transcript_id "HERVL_5p15.2a"; locus "HERVL_5p15.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0468"; model_cov "3270"; model_pct "57.8"; chr5 rmsk exon 10716384 10716832 3087 + . gene_id "HERVL_5p15.2a"; transcript_id "HERVL_5p15.2a"; locus "HERVL_5p15.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0468"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 10716833 10717681 6539 + . gene_id "HERVL_5p15.2a"; transcript_id "HERVL_5p15.2a"; locus "HERVL_5p15.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0468"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "-4800"; repStart "1"; chr5 rmsk exon 10717681 10720094 18730 + . gene_id "HERVL_5p15.2a"; transcript_id "HERVL_5p15.2a"; locus "HERVL_5p15.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0468"; repClass "LTR"; repEnd "3879"; repFamily "ERVL"; repLeft "-1775"; repStart "1462"; ### HERVL_5p15.2b ### chr5 rmsk gene 10720111 10722498 . + . gene_id "HERVL_5p15.2b"; transcript_id "HERVL_5p15.2b"; locus "HERVL_5p15.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0469"; model_cov "1867"; model_pct "33.0"; chr5 rmsk exon 10720111 10720185 416 + . gene_id "HERVL_5p15.2b"; transcript_id "HERVL_5p15.2b"; locus "HERVL_5p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0469"; repClass "LTR"; repEnd "283"; repFamily "ERVL"; repLeft "-5371"; repStart "205"; chr5 rmsk exon 10720334 10722105 13357 + . gene_id "HERVL_5p15.2b"; transcript_id "HERVL_5p15.2b"; locus "HERVL_5p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0469"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3865"; chr5 rmsk exon 10722106 10722498 2866 + . gene_id "HERVL_5p15.2b"; transcript_id "HERVL_5p15.2b"; locus "HERVL_5p15.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0469"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### ERVLE_5p15.2b ### chr5 rmsk gene 12266049 12266860 . - . gene_id "ERVLE_5p15.2b"; transcript_id "ERVLE_5p15.2b"; locus "ERVLE_5p15.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1281"; model_cov "600"; model_pct "10.6"; chr5 rmsk exon 12266049 12266402 670 - . gene_id "ERVLE_5p15.2b"; transcript_id "ERVLE_5p15.2b"; locus "ERVLE_5p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1281"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "3096"; repStart "-2207"; chr5 rmsk exon 12266620 12266860 670 - . gene_id "ERVLE_5p15.2b"; transcript_id "ERVLE_5p15.2b"; locus "ERVLE_5p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1281"; repClass "LTR"; repEnd "3095"; repFamily "ERVL"; repLeft "2859"; repStart "-2572"; ### ERVLE_5p15.2c ### chr5 rmsk gene 12273370 12275147 . + . gene_id "ERVLE_5p15.2c"; transcript_id "ERVLE_5p15.2c"; locus "ERVLE_5p15.2c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1282"; model_cov "893"; model_pct "15.8"; chr5 rmsk exon 12273370 12273452 319 + . gene_id "ERVLE_5p15.2c"; transcript_id "ERVLE_5p15.2c"; locus "ERVLE_5p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1282"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "-800"; repStart "4789"; chr5 rmsk exon 12273888 12274632 2319 + . gene_id "ERVLE_5p15.2c"; transcript_id "ERVLE_5p15.2c"; locus "ERVLE_5p15.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1282"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4852"; chr5 rmsk exon 12274830 12275147 728 + . gene_id "ERVLE_5p15.2c"; transcript_id "ERVLE_5p15.2c"; locus "ERVLE_5p15.2c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1282"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "-18"; repStart "302"; ### HERVL40_5p15.2 ### chr5 rmsk gene 12338677 12339518 . - . gene_id "HERVL40_5p15.2"; transcript_id "HERVL40_5p15.2"; locus "HERVL40_5p15.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0142"; model_cov "777"; model_pct "14.1"; chr5 rmsk exon 12338677 12338940 622 - . gene_id "HERVL40_5p15.2"; transcript_id "HERVL40_5p15.2"; locus "HERVL40_5p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0142"; repClass "LTR"; repEnd "1513"; repFamily "ERVL"; repLeft "1253"; repStart "-4017"; chr5 rmsk exon 12339014 12339518 1264 - . gene_id "HERVL40_5p15.2"; transcript_id "HERVL40_5p15.2"; locus "HERVL40_5p15.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0142"; repClass "LTR"; repEnd "1115"; repFamily "ERVL"; repLeft "598"; repStart "-4415"; ### ERVLE_5p15.2d ### chr5 rmsk gene 12460303 12463124 . + . gene_id "ERVLE_5p15.2d"; transcript_id "ERVLE_5p15.2d"; locus "ERVLE_5p15.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1283"; model_cov "1532"; model_pct "27.0"; chr5 rmsk exon 12460303 12460492 373 + . gene_id "ERVLE_5p15.2d"; transcript_id "ERVLE_5p15.2d"; locus "ERVLE_5p15.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1283"; repClass "LTR"; repEnd "1296"; repFamily "ERVL"; repLeft "-4371"; repStart "1110"; chr5 rmsk exon 12461844 12463124 1774 + . gene_id "ERVLE_5p15.2d"; transcript_id "ERVLE_5p15.2d"; locus "ERVLE_5p15.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1283"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "-2104"; repStart "2217"; ### HERVH_5p15.2a ### chr5 rmsk gene 12490212 12494480 . + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0465"; model_cov "3911"; model_pct "50.7"; chr5 rmsk exon 12490212 12490322 953 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "362"; chr5 rmsk exon 12490323 12493164 15578 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr5 rmsk exon 12493144 12493293 944 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 12493284 12493445 1053 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr5 rmsk exon 12493438 12494047 4607 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr5 rmsk exon 12494048 12494480 3760 + . gene_id "HERVH_5p15.2a"; transcript_id "HERVH_5p15.2a"; locus "HERVH_5p15.2a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0465"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### ERV316A3_5p15.2a ### chr5 rmsk gene 12567305 12567871 . + . gene_id "ERV316A3_5p15.2a"; transcript_id "ERV316A3_5p15.2a"; locus "ERV316A3_5p15.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0931"; model_cov "526"; model_pct "10.1"; chr5 rmsk exon 12567305 12567532 833 + . gene_id "ERV316A3_5p15.2a"; transcript_id "ERV316A3_5p15.2a"; locus "ERV316A3_5p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0931"; repClass "LTR"; repEnd "4710"; repFamily "ERVL"; repLeft "-516"; repStart "4479"; chr5 rmsk exon 12567586 12567871 792 + . gene_id "ERV316A3_5p15.2a"; transcript_id "ERV316A3_5p15.2a"; locus "ERV316A3_5p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0931"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4789"; ### HERVH_5p15.2b ### chr5 rmsk gene 12663608 12668330 . - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0466"; model_cov "4263"; model_pct "55.3"; chr5 rmsk exon 12663608 12664226 4160 - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0466"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "4488"; repStart "-2607"; chr5 rmsk exon 12664229 12664734 3304 - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0466"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 12664725 12664874 922 - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0466"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 12664854 12667879 20145 - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0466"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr5 rmsk exon 12667882 12668330 3355 - . gene_id "HERVH_5p15.2b"; transcript_id "HERVH_5p15.2b"; locus "HERVH_5p15.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0466"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5p15.2b ### chr5 rmsk gene 12781643 12782908 . - . gene_id "ERV316A3_5p15.2b"; transcript_id "ERV316A3_5p15.2b"; locus "ERV316A3_5p15.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0933"; model_cov "530"; model_pct "10.1"; chr5 rmsk exon 12781643 12781932 528 - . gene_id "ERV316A3_5p15.2b"; transcript_id "ERV316A3_5p15.2b"; locus "ERV316A3_5p15.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0933"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "3543"; repStart "-1396"; chr5 rmsk exon 12782679 12782908 331 - . gene_id "ERV316A3_5p15.2b"; transcript_id "ERV316A3_5p15.2b"; locus "ERV316A3_5p15.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0933"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "1058"; repStart "-3925"; ### HERVL_5p15.2c ### chr5 rmsk gene 12904475 12905220 . + . gene_id "HERVL_5p15.2c"; transcript_id "HERVL_5p15.2c"; locus "HERVL_5p15.2c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0472"; model_cov "757"; model_pct "13.4"; chr5 rmsk exon 12904475 12905220 5528 + . gene_id "HERVL_5p15.2c"; transcript_id "HERVL_5p15.2c"; locus "HERVL_5p15.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0472"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3248"; repStart "1649"; ### HERVL_5p15.2d ### chr5 rmsk gene 12915818 12921395 . - . gene_id "HERVL_5p15.2d"; transcript_id "HERVL_5p15.2d"; locus "HERVL_5p15.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0474"; model_cov "5028"; model_pct "88.9"; chr5 rmsk exon 12915818 12915882 340 - . gene_id "HERVL_5p15.2d"; transcript_id "HERVL_5p15.2d"; locus "HERVL_5p15.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0474"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr5 rmsk exon 12916002 12916407 3004 - . gene_id "HERVL_5p15.2d"; transcript_id "HERVL_5p15.2d"; locus "HERVL_5p15.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0474"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr5 rmsk exon 12916408 12921395 37616 - . gene_id "HERVL_5p15.2d"; transcript_id "HERVL_5p15.2d"; locus "HERVL_5p15.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0474"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "626"; repStart "0"; ### HERVL18_5p15.2 ### chr5 rmsk gene 12934817 12938306 . + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0053"; model_cov "3431"; model_pct "56.7"; chr5 rmsk exon 12934817 12935154 1948 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr5 rmsk exon 12935155 12935996 3944 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "-5086"; repStart "3"; chr5 rmsk exon 12935985 12936341 1140 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1388"; chr5 rmsk exon 12936341 12936611 1429 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr5 rmsk exon 12936611 12937471 5626 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr5 rmsk exon 12937478 12938306 5485 + . gene_id "HERVL18_5p15.2"; transcript_id "HERVL18_5p15.2"; locus "HERVL18_5p15.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0053"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "-790"; repStart "4398"; ### ERVLE_5p15.2e ### chr5 rmsk gene 12970915 12971708 . + . gene_id "ERVLE_5p15.2e"; transcript_id "ERVLE_5p15.2e"; locus "ERVLE_5p15.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1284"; model_cov "866"; model_pct "15.3"; chr5 rmsk exon 12970915 12971708 782 + . gene_id "ERVLE_5p15.2e"; transcript_id "ERVLE_5p15.2e"; locus "ERVLE_5p15.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1284"; repClass "LTR"; repEnd "2062"; repFamily "ERVL"; repLeft "-3605"; repStart "1196"; ### HERVL_5p15.2e ### chr5 rmsk gene 13147650 13149920 . - . gene_id "HERVL_5p15.2e"; transcript_id "HERVL_5p15.2e"; locus "HERVL_5p15.2e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0475"; model_cov "1782"; model_pct "31.5"; chr5 rmsk exon 13147650 13149426 13849 - . gene_id "HERVL_5p15.2e"; transcript_id "HERVL_5p15.2e"; locus "HERVL_5p15.2e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0475"; repClass "LTR"; repEnd "1783"; repFamily "ERVL"; repLeft "1"; repStart "-3871"; chr5 rmsk exon 13149427 13149466 2820 - . gene_id "HERVL_5p15.2e"; transcript_id "HERVL_5p15.2e"; locus "HERVL_5p15.2e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0475"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr5 rmsk exon 13149535 13149920 2820 - . gene_id "HERVL_5p15.2e"; transcript_id "HERVL_5p15.2e"; locus "HERVL_5p15.2e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0475"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### HERVL_5p15.2f ### chr5 rmsk gene 13195693 13201914 . + . gene_id "HERVL_5p15.2f"; transcript_id "HERVL_5p15.2f"; locus "HERVL_5p15.2f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0476"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 13195693 13195741 376 + . gene_id "HERVL_5p15.2f"; transcript_id "HERVL_5p15.2f"; locus "HERVL_5p15.2f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0476"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "-404"; repStart "-8"; chr5 rmsk exon 13195743 13195963 1550 + . gene_id "HERVL_5p15.2f"; transcript_id "HERVL_5p15.2f"; locus "HERVL_5p15.2f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0476"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "219"; chr5 rmsk exon 13195965 13201526 41306 + . gene_id "HERVL_5p15.2f"; transcript_id "HERVL_5p15.2f"; locus "HERVL_5p15.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0476"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 13201527 13201914 2918 + . gene_id "HERVL_5p15.2f"; transcript_id "HERVL_5p15.2f"; locus "HERVL_5p15.2f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0476"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### ERVLB4_5p15.2a ### chr5 rmsk gene 13232104 13232861 . - . gene_id "ERVLB4_5p15.2a"; transcript_id "ERVLB4_5p15.2a"; locus "ERVLB4_5p15.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0578"; model_cov "772"; model_pct "13.5"; chr5 rmsk exon 13232104 13232861 2068 - . gene_id "ERVLB4_5p15.2a"; transcript_id "ERVLB4_5p15.2a"; locus "ERVLB4_5p15.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0578"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "1991"; repStart "-2951"; ### ERV316A3_5p15.2c ### chr5 rmsk gene 13237989 13239596 . - . gene_id "ERV316A3_5p15.2c"; transcript_id "ERV316A3_5p15.2c"; locus "ERV316A3_5p15.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0935"; model_cov "1085"; model_pct "20.8"; chr5 rmsk exon 13237989 13238294 636 - . gene_id "ERV316A3_5p15.2c"; transcript_id "ERV316A3_5p15.2c"; locus "ERV316A3_5p15.2c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0935"; repClass "LTR"; repEnd "353"; repFamily "ERVL"; repLeft "38"; repStart "-85"; chr5 rmsk exon 13238362 13238631 436 - . gene_id "ERV316A3_5p15.2c"; transcript_id "ERV316A3_5p15.2c"; locus "ERV316A3_5p15.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0935"; repClass "LTR"; repEnd "5167"; repFamily "ERVL"; repLeft "4886"; repStart "-59"; chr5 rmsk exon 13238838 13239596 907 - . gene_id "ERV316A3_5p15.2c"; transcript_id "ERV316A3_5p15.2c"; locus "ERV316A3_5p15.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0935"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "4019"; repStart "-403"; ### ERV316A3_5p15.2d ### chr5 rmsk gene 13413442 13416394 . - . gene_id "ERV316A3_5p15.2d"; transcript_id "ERV316A3_5p15.2d"; locus "ERV316A3_5p15.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0936"; model_cov "2332"; model_pct "44.6"; chr5 rmsk exon 13413442 13413869 1448 - . gene_id "ERV316A3_5p15.2d"; transcript_id "ERV316A3_5p15.2d"; locus "ERV316A3_5p15.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0936"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr5 rmsk exon 13413953 13414176 701 - . gene_id "ERV316A3_5p15.2d"; transcript_id "ERV316A3_5p15.2d"; locus "ERV316A3_5p15.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0936"; repClass "LTR"; repEnd "5146"; repFamily "ERVL"; repLeft "4918"; repStart "-80"; chr5 rmsk exon 13414327 13416394 2964 - . gene_id "ERV316A3_5p15.2d"; transcript_id "ERV316A3_5p15.2d"; locus "ERV316A3_5p15.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0936"; repClass "LTR"; repEnd "4713"; repFamily "ERVL"; repLeft "2609"; repStart "-513"; ### ERV316A3_5p15.2e ### chr5 rmsk gene 13422785 13424300 . - . gene_id "ERV316A3_5p15.2e"; transcript_id "ERV316A3_5p15.2e"; locus "ERV316A3_5p15.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0937"; model_cov "1230"; model_pct "23.5"; chr5 rmsk exon 13422785 13423988 1971 - . gene_id "ERV316A3_5p15.2e"; transcript_id "ERV316A3_5p15.2e"; locus "ERV316A3_5p15.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0937"; repClass "LTR"; repEnd "1423"; repFamily "ERVL"; repLeft "193"; repStart "-3803"; chr5 rmsk exon 13424035 13424300 416 - . gene_id "ERV316A3_5p15.2e"; transcript_id "ERV316A3_5p15.2e"; locus "ERV316A3_5p15.2e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0937"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "52"; repStart "-125"; ### ERV316A3_5p15.2f ### chr5 rmsk gene 13468906 13469948 . + . gene_id "ERV316A3_5p15.2f"; transcript_id "ERV316A3_5p15.2f"; locus "ERV316A3_5p15.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0938"; model_cov "733"; model_pct "14.0"; chr5 rmsk exon 13468906 13469669 2000 + . gene_id "ERV316A3_5p15.2f"; transcript_id "ERV316A3_5p15.2f"; locus "ERV316A3_5p15.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0938"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4351"; chr5 rmsk exon 13469702 13469948 709 + . gene_id "ERV316A3_5p15.2f"; transcript_id "ERV316A3_5p15.2f"; locus "ERV316A3_5p15.2f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0938"; repClass "LTR"; repEnd "471"; repFamily "ERVL"; repLeft "-9"; repStart "202"; ### ERVLB4_5p15.2b ### chr5 rmsk gene 14660212 14663052 . - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0579"; model_cov "2456"; model_pct "43.0"; chr5 rmsk exon 14660212 14660405 1594 - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0579"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "3176"; repStart "-2341"; chr5 rmsk exon 14660695 14660819 1594 - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0579"; repClass "LTR"; repEnd "3175"; repFamily "ERVL"; repLeft "3068"; repStart "-2539"; chr5 rmsk exon 14660817 14661631 6465 - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0579"; repClass "LTR"; repEnd "2956"; repFamily "ERVL"; repLeft "1988"; repStart "-2758"; chr5 rmsk exon 14661940 14662799 6465 - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0579"; repClass "LTR"; repEnd "2143"; repFamily "ERVL"; repLeft "1088"; repStart "-3571"; chr5 rmsk exon 14662928 14663052 533 - . gene_id "ERVLB4_5p15.2b"; transcript_id "ERVLB4_5p15.2b"; locus "ERVLB4_5p15.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0579"; repClass "LTR"; repEnd "1141"; repFamily "ERVL"; repLeft "1012"; repStart "-4573"; ### ERVLE_5p15.1a ### chr5 rmsk gene 15023066 15024376 . - . gene_id "ERVLE_5p15.1a"; transcript_id "ERVLE_5p15.1a"; locus "ERVLE_5p15.1a"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_1285"; model_cov "813"; model_pct "14.3"; chr5 rmsk exon 15023066 15023649 1924 - . gene_id "ERVLE_5p15.1a"; transcript_id "ERVLE_5p15.1a"; locus "ERVLE_5p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1285"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "3397"; repStart "-1654"; chr5 rmsk exon 15023650 15023871 547 - . gene_id "ERVLE_5p15.1a"; transcript_id "ERVLE_5p15.1a"; locus "ERVLE_5p15.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1285"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "400"; repStart "0"; chr5 rmsk exon 15024043 15024178 525 - . gene_id "ERVLE_5p15.1a"; transcript_id "ERVLE_5p15.1a"; locus "ERVLE_5p15.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1285"; repClass "LTR"; repEnd "141"; repFamily "ERVL"; repLeft "4"; repStart "-522"; chr5 rmsk exon 15024182 15024376 648 - . gene_id "ERVLE_5p15.1a"; transcript_id "ERVLE_5p15.1a"; locus "ERVLE_5p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1285"; repClass "LTR"; repEnd "3414"; repFamily "ERVL"; repLeft "3217"; repStart "-2253"; ### HERVL_5p15.1a ### chr5 rmsk gene 15058114 15064463 . + . gene_id "HERVL_5p15.1a"; transcript_id "HERVL_5p15.1a"; locus "HERVL_5p15.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0477"; model_cov "5641"; model_pct "99.8"; chr5 rmsk exon 15058114 15058414 2506 + . gene_id "HERVL_5p15.1a"; transcript_id "HERVL_5p15.1a"; locus "HERVL_5p15.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0477"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "-134"; repStart "8"; chr5 rmsk exon 15058415 15064015 45545 + . gene_id "HERVL_5p15.1a"; transcript_id "HERVL_5p15.1a"; locus "HERVL_5p15.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0477"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "13"; chr5 rmsk exon 15064016 15064463 3736 + . gene_id "HERVL_5p15.1a"; transcript_id "HERVL_5p15.1a"; locus "HERVL_5p15.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0477"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_5p15.1 ### chr5 rmsk gene 15196659 15202471 . - . gene_id "MER41_5p15.1"; transcript_id "MER41_5p15.1"; locus "MER41_5p15.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0168"; model_cov "5943"; model_pct "99.9"; chr5 rmsk exon 15196659 15197125 3639 - . gene_id "MER41_5p15.1"; transcript_id "MER41_5p15.1"; locus "MER41_5p15.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0168"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-85"; chr5 rmsk exon 15197126 15202471 14110 - . gene_id "MER41_5p15.1"; transcript_id "MER41_5p15.1"; locus "MER41_5p15.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0168"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5p15.1a ### chr5 rmsk gene 15220672 15222854 . - . gene_id "ERV316A3_5p15.1a"; transcript_id "ERV316A3_5p15.1a"; locus "ERV316A3_5p15.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0940"; model_cov "1775"; model_pct "34.0"; chr5 rmsk exon 15220672 15222447 3768 - . gene_id "ERV316A3_5p15.1a"; transcript_id "ERV316A3_5p15.1a"; locus "ERV316A3_5p15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0940"; repClass "LTR"; repEnd "1776"; repFamily "ERVL"; repLeft "1"; repStart "-3450"; chr5 rmsk exon 15222454 15222854 991 - . gene_id "ERV316A3_5p15.1a"; transcript_id "ERV316A3_5p15.1a"; locus "ERV316A3_5p15.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0940"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "1"; repStart "-6"; ### ERV316A3_5p15.1b ### chr5 rmsk gene 15303708 15304316 . + . gene_id "ERV316A3_5p15.1b"; transcript_id "ERV316A3_5p15.1b"; locus "ERV316A3_5p15.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0941"; model_cov "618"; model_pct "11.8"; chr5 rmsk exon 15303708 15304316 1966 + . gene_id "ERV316A3_5p15.1b"; transcript_id "ERV316A3_5p15.1b"; locus "ERV316A3_5p15.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0941"; repClass "LTR"; repEnd "4295"; repFamily "ERVL"; repLeft "-931"; repStart "3677"; ### ERVLE_5p15.1b ### chr5 rmsk gene 15312668 15313975 . + . gene_id "ERVLE_5p15.1b"; transcript_id "ERVLE_5p15.1b"; locus "ERVLE_5p15.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1287"; model_cov "1416"; model_pct "25.0"; chr5 rmsk exon 15312668 15313975 2008 + . gene_id "ERVLE_5p15.1b"; transcript_id "ERVLE_5p15.1b"; locus "ERVLE_5p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1287"; repClass "LTR"; repEnd "1714"; repFamily "ERVL"; repLeft "-3953"; repStart "298"; ### ERVLE_5p15.1c ### chr5 rmsk gene 15317276 15320290 . + . gene_id "ERVLE_5p15.1c"; transcript_id "ERVLE_5p15.1c"; locus "ERVLE_5p15.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1288"; model_cov "3130"; model_pct "55.2"; chr5 rmsk exon 15317276 15319297 2781 + . gene_id "ERVLE_5p15.1c"; transcript_id "ERVLE_5p15.1c"; locus "ERVLE_5p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1288"; repClass "LTR"; repEnd "3860"; repFamily "ERVL"; repLeft "-1807"; repStart "1775"; chr5 rmsk exon 15319363 15320290 1504 + . gene_id "ERVLE_5p15.1c"; transcript_id "ERVLE_5p15.1c"; locus "ERVLE_5p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1288"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-638"; repStart "3984"; ### HERVL40_5p15.1a ### chr5 rmsk gene 15337517 15340872 . + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; category "unknown"; intModel "HERVL40-int"; locid "HERVL40-int_0145"; model_cov "1997"; model_pct "36.1"; chr5 rmsk exon 15337517 15337837 1342 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-7"; repStart "175"; chr5 rmsk exon 15337851 15337958 366 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "116"; repFamily "ERVL"; repLeft "-5414"; repStart "8"; chr5 rmsk exon 15338261 15338398 391 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "-4307"; repStart "1077"; chr5 rmsk exon 15338489 15338565 359 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "-4001"; repStart "1455"; chr5 rmsk exon 15338630 15339435 3073 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "2905"; repFamily "ERVL"; repLeft "-2625"; repStart "2050"; chr5 rmsk exon 15339439 15339478 260 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "423"; chr5 rmsk exon 15339687 15340036 2381 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "-1649"; repStart "3522"; chr5 rmsk exon 15340437 15340503 2381 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "3960"; repFamily "ERVL"; repLeft "-1570"; repStart "3882"; chr5 rmsk exon 15340559 15340872 2381 + . gene_id "HERVL40_5p15.1a"; transcript_id "HERVL40_5p15.1a"; locus "HERVL40_5p15.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0145"; repClass "LTR"; repEnd "4338"; repFamily "ERVL"; repLeft "-1192"; repStart "3961"; ### HERVH_5p15.1 ### chr5 rmsk gene 16419969 16425426 . + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0467"; model_cov "4914"; model_pct "63.7"; chr5 rmsk exon 16419969 16420378 2783 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 16420381 16423121 17616 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr5 rmsk exon 16423116 16423261 914 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr5 rmsk exon 16423254 16423756 3411 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr5 rmsk exon 16423760 16424419 4532 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr5 rmsk exon 16424403 16424640 1352 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr5 rmsk exon 16424639 16425015 2397 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 16425016 16425426 2870 + . gene_id "HERVH_5p15.1"; transcript_id "HERVH_5p15.1"; locus "HERVH_5p15.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0467"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5p15.1c ### chr5 rmsk gene 16641930 16642770 . - . gene_id "ERV316A3_5p15.1c"; transcript_id "ERV316A3_5p15.1c"; locus "ERV316A3_5p15.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0943"; model_cov "821"; model_pct "15.7"; chr5 rmsk exon 16641930 16642770 1794 - . gene_id "ERV316A3_5p15.1c"; transcript_id "ERV316A3_5p15.1c"; locus "ERV316A3_5p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0943"; repClass "LTR"; repEnd "2341"; repFamily "ERVL"; repLeft "1520"; repStart "-2885"; ### MER4B_5p15.1 ### chr5 rmsk gene 17061637 17067054 . + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0151"; model_cov "2589"; model_pct "38.3"; chr5 rmsk exon 17061637 17062036 2569 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "4074"; repFamily "ERV1"; repLeft "-2684"; repStart "3647"; chr5 rmsk exon 17063600 17063621 2569 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "4093"; repFamily "ERV1"; repLeft "-2665"; repStart "4075"; chr5 rmsk exon 17063623 17063715 10991 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "4553"; repFamily "ERV1"; repLeft "-2205"; repStart "4462"; chr5 rmsk exon 17064001 17065111 10991 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1010"; repStart "4554"; chr5 rmsk exon 17065415 17065881 10991 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "6210"; repFamily "ERV1"; repLeft "-548"; repStart "5749"; chr5 rmsk exon 17066383 17066438 10991 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "6265"; repFamily "ERV1"; repLeft "-493"; repStart "6211"; chr5 rmsk exon 17066746 17067054 10991 + . gene_id "MER4B_5p15.1"; transcript_id "MER4B_5p15.1"; locus "MER4B_5p15.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0151"; repClass "LTR"; repEnd "6610"; repFamily "ERV1"; repLeft "-148"; repStart "6266"; ### ERV316A3_5p15.1d ### chr5 rmsk gene 18082406 18085783 . + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0944"; model_cov "2579"; model_pct "49.3"; chr5 rmsk exon 18082406 18082563 330 + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0944"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-7"; repStart "277"; chr5 rmsk exon 18082597 18083219 1043 + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0944"; repClass "LTR"; repEnd "908"; repFamily "ERVL"; repLeft "-4318"; repStart "278"; chr5 rmsk exon 18083360 18083922 1043 + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0944"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "-3740"; repStart "909"; chr5 rmsk exon 18084189 18085237 1730 + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0944"; repClass "LTR"; repEnd "3532"; repFamily "ERVL"; repLeft "-1694"; repStart "2470"; chr5 rmsk exon 18085469 18085783 860 + . gene_id "ERV316A3_5p15.1d"; transcript_id "ERV316A3_5p15.1d"; locus "ERV316A3_5p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0944"; repClass "LTR"; repEnd "3962"; repFamily "ERVL"; repLeft "-1264"; repStart "3652"; ### ERV316A3_5p15.1e ### chr5 rmsk gene 18085818 18086746 . + . gene_id "ERV316A3_5p15.1e"; transcript_id "ERV316A3_5p15.1e"; locus "ERV316A3_5p15.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0945"; model_cov "775"; model_pct "14.8"; chr5 rmsk exon 18085818 18085983 326 + . gene_id "ERV316A3_5p15.1e"; transcript_id "ERV316A3_5p15.1e"; locus "ERV316A3_5p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0945"; repClass "LTR"; repEnd "3895"; repFamily "ERVL"; repLeft "-1331"; repStart "3722"; chr5 rmsk exon 18086013 18086746 1008 + . gene_id "ERV316A3_5p15.1e"; transcript_id "ERV316A3_5p15.1e"; locus "ERV316A3_5p15.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0945"; repClass "LTR"; repEnd "4550"; repFamily "ERVL"; repLeft "-676"; repStart "3948"; ### PABLA_5p15.1 ### chr5 rmsk gene 18199317 18202037 . + . gene_id "PABLA_5p15.1"; transcript_id "PABLA_5p15.1"; locus "PABLA_5p15.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0042"; model_cov "3080"; model_pct "61.4"; chr5 rmsk exon 18199317 18199994 4873 + . gene_id "PABLA_5p15.1"; transcript_id "PABLA_5p15.1"; locus "PABLA_5p15.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0042"; repClass "LTR"; repEnd "-791"; repFamily "ERV1"; repLeft "-5806"; repStart "-1582"; chr5 rmsk exon 18200045 18201751 5331 + . gene_id "PABLA_5p15.1"; transcript_id "PABLA_5p15.1"; locus "PABLA_5p15.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0042"; repClass "LTR"; repEnd "912"; repFamily "ERV1"; repLeft "-4103"; repStart "-1312"; chr5 rmsk exon 18201980 18202037 298 + . gene_id "PABLA_5p15.1"; transcript_id "PABLA_5p15.1"; locus "PABLA_5p15.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0042"; repClass "LTR"; repEnd "3661"; repFamily "ERV1"; repLeft "-1354"; repStart "3596"; ### HERVL_5p15.1c ### chr5 rmsk gene 18274724 18277386 . + . gene_id "HERVL_5p15.1c"; transcript_id "HERVL_5p15.1c"; locus "HERVL_5p15.1c"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_0479"; model_cov "1150"; model_pct "20.3"; chr5 rmsk exon 18274724 18274973 1677 + . gene_id "HERVL_5p15.1c"; transcript_id "HERVL_5p15.1c"; locus "HERVL_5p15.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0479"; prev_strand "-"; repClass "LTR"; repEnd "4052"; repFamily "ERVL"; repLeft "3803"; repStart "-1602"; chr5 rmsk exon 18274997 18275677 4356 + . gene_id "HERVL_5p15.1c"; transcript_id "HERVL_5p15.1c"; locus "HERVL_5p15.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0479"; prev_strand "-"; repClass "LTR"; repEnd "3899"; repFamily "ERVL"; repLeft "3217"; repStart "-1755"; chr5 rmsk exon 18275677 18276849 8120 + . gene_id "HERVL_5p15.1c"; transcript_id "HERVL_5p15.1c"; locus "HERVL_5p15.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0479"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4504"; chr5 rmsk exon 18276850 18277386 1527 + . gene_id "HERVL_5p15.1c"; transcript_id "HERVL_5p15.1c"; locus "HERVL_5p15.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0479"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_5p15.1b ### chr5 rmsk gene 18294466 18297248 . - . gene_id "HERVL_5p15.1b"; transcript_id "HERVL_5p15.1b"; locus "HERVL_5p15.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0480"; model_cov "1925"; model_pct "34.0"; chr5 rmsk exon 18294466 18295021 2297 - . gene_id "HERVL_5p15.1b"; transcript_id "HERVL_5p15.1b"; locus "HERVL_5p15.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0480"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 18295022 18296016 7171 - . gene_id "HERVL_5p15.1b"; transcript_id "HERVL_5p15.1b"; locus "HERVL_5p15.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0480"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4658"; repStart "0"; chr5 rmsk exon 18296013 18296069 6034 - . gene_id "HERVL_5p15.1b"; transcript_id "HERVL_5p15.1b"; locus "HERVL_5p15.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0480"; repClass "LTR"; repEnd "3944"; repFamily "ERVL"; repLeft "3900"; repStart "-1710"; chr5 rmsk exon 18296388 18297248 6034 - . gene_id "HERVL_5p15.1b"; transcript_id "HERVL_5p15.1b"; locus "HERVL_5p15.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0480"; repClass "LTR"; repEnd "3899"; repFamily "ERVL"; repLeft "3014"; repStart "-1755"; ### ERVLB4_5p15.1 ### chr5 rmsk gene 18351093 18354624 . + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0581"; model_cov "2425"; model_pct "42.4"; chr5 rmsk exon 18351093 18351793 3738 + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0581"; repClass "LTR"; repEnd "3901"; repFamily "ERVL"; repLeft "-1813"; repStart "3169"; chr5 rmsk exon 18351812 18353222 7759 + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0581"; repClass "LTR"; repEnd "5478"; repFamily "ERVL"; repLeft "-236"; repStart "4020"; chr5 rmsk exon 18354049 18354276 7759 + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0581"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5479"; chr5 rmsk exon 18354277 18354465 848 + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0581"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-327"; repStart "1"; chr5 rmsk exon 18354449 18354624 795 + . gene_id "ERVLB4_5p15.1"; transcript_id "ERVLB4_5p15.1"; locus "ERVLB4_5p15.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0581"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "344"; ### HERVL40_5p15.1b ### chr5 rmsk gene 18391469 18395845 . - . gene_id "HERVL40_5p15.1b"; transcript_id "HERVL40_5p15.1b"; locus "HERVL40_5p15.1b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0147"; model_cov "3099"; model_pct "56.0"; chr5 rmsk exon 18391469 18393827 5103 - . gene_id "HERVL40_5p15.1b"; transcript_id "HERVL40_5p15.1b"; locus "HERVL40_5p15.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0147"; repClass "LTR"; repEnd "5435"; repFamily "ERVL"; repLeft "3049"; repStart "-95"; chr5 rmsk exon 18394042 18394291 826 - . gene_id "HERVL40_5p15.1b"; transcript_id "HERVL40_5p15.1b"; locus "HERVL40_5p15.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0147"; repClass "LTR"; repEnd "3033"; repFamily "ERVL"; repLeft "2779"; repStart "-2497"; chr5 rmsk exon 18394985 18395140 292 - . gene_id "HERVL40_5p15.1b"; transcript_id "HERVL40_5p15.1b"; locus "HERVL40_5p15.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0147"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "1232"; repStart "-4145"; chr5 rmsk exon 18395540 18395845 597 - . gene_id "HERVL40_5p15.1b"; transcript_id "HERVL40_5p15.1b"; locus "HERVL40_5p15.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0147"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "917"; repStart "-4307"; ### ERV316A3_5p14.3a ### chr5 rmsk gene 18516847 18517981 . - . gene_id "ERV316A3_5p14.3a"; transcript_id "ERV316A3_5p14.3a"; locus "ERV316A3_5p14.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0946"; model_cov "837"; model_pct "16.0"; chr5 rmsk exon 18516847 18517193 722 - . gene_id "ERV316A3_5p14.3a"; transcript_id "ERV316A3_5p14.3a"; locus "ERV316A3_5p14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0946"; repClass "LTR"; repEnd "3105"; repFamily "ERVL"; repLeft "2749"; repStart "-2121"; chr5 rmsk exon 18517660 18517981 446 - . gene_id "ERV316A3_5p14.3a"; transcript_id "ERV316A3_5p14.3a"; locus "ERV316A3_5p14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0946"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "1469"; repStart "-3276"; ### ERV316A3_5p14.3b ### chr5 rmsk gene 18518069 18518488 . - . gene_id "ERV316A3_5p14.3b"; transcript_id "ERV316A3_5p14.3b"; locus "ERV316A3_5p14.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0947"; model_cov "603"; model_pct "11.5"; chr5 rmsk exon 18518069 18518488 558 - . gene_id "ERV316A3_5p14.3b"; transcript_id "ERV316A3_5p14.3b"; locus "ERV316A3_5p14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0947"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "1347"; repStart "-3276"; ### ERV316A3_5p14.3c ### chr5 rmsk gene 18519474 18521830 . - . gene_id "ERV316A3_5p14.3c"; transcript_id "ERV316A3_5p14.3c"; locus "ERV316A3_5p14.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0948"; model_cov "1693"; model_pct "32.4"; chr5 rmsk exon 18519474 18520262 1104 - . gene_id "ERV316A3_5p14.3c"; transcript_id "ERV316A3_5p14.3c"; locus "ERV316A3_5p14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0948"; repClass "LTR"; repEnd "2113"; repFamily "ERVL"; repLeft "1218"; repStart "-3113"; chr5 rmsk exon 18520789 18520964 498 - . gene_id "ERV316A3_5p14.3c"; transcript_id "ERV316A3_5p14.3c"; locus "ERV316A3_5p14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0948"; repClass "LTR"; repEnd "856"; repFamily "ERVL"; repLeft "666"; repStart "-4370"; chr5 rmsk exon 18521014 18521596 486 - . gene_id "ERV316A3_5p14.3c"; transcript_id "ERV316A3_5p14.3c"; locus "ERV316A3_5p14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0948"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "241"; repStart "-4377"; chr5 rmsk exon 18521618 18521830 358 - . gene_id "ERV316A3_5p14.3c"; transcript_id "ERV316A3_5p14.3c"; locus "ERV316A3_5p14.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0948"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "227"; repStart "-2"; ### HERVH_5p14.3c ### chr5 rmsk gene 18535211 18544018 . + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_0469"; model_cov "4304"; model_pct "55.8"; chr5 rmsk exon 18535211 18535471 1870 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "259"; repFamily "ERV1"; repLeft "-191"; repStart "1"; chr5 rmsk exon 18535484 18535671 742 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "-6946"; repStart "609"; chr5 rmsk exon 18535671 18537077 9288 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1591"; chr5 rmsk exon 18537077 18537221 856 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 18537221 18537711 3054 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 18537714 18538374 4045 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 18538376 18538592 1350 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 18538593 18538965 2528 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 18538966 18539420 3108 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 18539421 18541711 15015 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "608"; chr5 rmsk exon 18541711 18541855 721 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 18541855 18542347 3051 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3492"; chr5 rmsk exon 18542347 18542970 2745 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chr5 rmsk exon 18542972 18543189 1299 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 18543190 18543567 2320 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 18543568 18544018 3438 + . gene_id "HERVH_5p14.3c"; transcript_id "HERVH_5p14.3c"; locus "HERVH_5p14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0469"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_5p14.3a ### chr5 rmsk gene 18576469 18581943 . - . gene_id "ERVLB4_5p14.3a"; transcript_id "ERVLB4_5p14.3a"; locus "ERVLB4_5p14.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0582"; model_cov "4708"; model_pct "82.4"; chr5 rmsk exon 18576469 18576874 2219 - . gene_id "ERVLB4_5p14.3a"; transcript_id "ERVLB4_5p14.3a"; locus "ERVLB4_5p14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0582"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "4873"; repStart "-439"; chr5 rmsk exon 18576877 18578453 15405 - . gene_id "ERVLB4_5p14.3a"; transcript_id "ERVLB4_5p14.3a"; locus "ERVLB4_5p14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0582"; repClass "LTR"; repEnd "4766"; repFamily "ERVL"; repLeft "3128"; repStart "-948"; chr5 rmsk exon 18579423 18581943 15405 - . gene_id "ERVLB4_5p14.3a"; transcript_id "ERVLB4_5p14.3a"; locus "ERVLB4_5p14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0582"; repClass "LTR"; repEnd "3127"; repFamily "ERVL"; repLeft "459"; repStart "-2587"; ### ERV316A3_5p14.3d ### chr5 rmsk gene 18595846 18602210 . + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0949"; model_cov "3694"; model_pct "70.7"; chr5 rmsk exon 18595846 18596279 834 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-50"; repStart "-54"; chr5 rmsk exon 18596305 18597100 1064 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "852"; repFamily "ERVL"; repLeft "-4374"; repStart "3"; chr5 rmsk exon 18597208 18597580 965 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "1428"; repFamily "ERVL"; repLeft "-3798"; repStart "1058"; chr5 rmsk exon 18598136 18598503 1846 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "-2953"; repStart "1895"; chr5 rmsk exon 18598919 18599411 1846 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "2774"; repFamily "ERVL"; repLeft "-2452"; repStart "2274"; chr5 rmsk exon 18599558 18599665 408 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "2948"; repFamily "ERVL"; repLeft "-2278"; repStart "2841"; chr5 rmsk exon 18600145 18600944 2105 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-758"; repStart "3626"; chr5 rmsk exon 18601128 18601759 1880 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4577"; chr5 rmsk exon 18601762 18602210 651 + . gene_id "ERV316A3_5p14.3d"; transcript_id "ERV316A3_5p14.3d"; locus "ERV316A3_5p14.3d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0949"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_5p14.3a ### chr5 rmsk gene 18668843 18674598 . - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0470"; model_cov "4917"; model_pct "63.7"; chr5 rmsk exon 18668843 18669292 3196 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 18669293 18669680 2531 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7312"; repStart "0"; chr5 rmsk exon 18669671 18669885 1323 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 18669887 18670548 4283 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 18670552 18671052 3290 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3492"; repStart "-3721"; chr5 rmsk exon 18671043 18671192 920 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 18671187 18674150 19977 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 18674153 18674598 3173 - . gene_id "HERVH_5p14.3a"; transcript_id "HERVH_5p14.3a"; locus "HERVH_5p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0470"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_5p14.3 ### chr5 rmsk gene 18742472 18746014 . - . gene_id "HERVW_5p14.3"; transcript_id "HERVW_5p14.3"; locus "HERVW_5p14.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0113"; model_cov "2719"; model_pct "31.5"; chr5 rmsk exon 18742472 18742672 777 - . gene_id "HERVW_5p14.3"; transcript_id "HERVW_5p14.3"; locus "HERVW_5p14.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0113"; repClass "LTR"; repEnd "7559"; repFamily "ERV1"; repLeft "7359"; repStart "-1067"; chr5 rmsk exon 18742681 18744759 10987 - . gene_id "HERVW_5p14.3"; transcript_id "HERVW_5p14.3"; locus "HERVW_5p14.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0113"; repClass "LTR"; repEnd "3729"; repFamily "ERV1"; repLeft "1655"; repStart "-4897"; chr5 rmsk exon 18745564 18746014 2083 - . gene_id "HERVW_5p14.3"; transcript_id "HERVW_5p14.3"; locus "HERVW_5p14.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0113"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "17"; repStart "-8164"; ### HERVL_5p14.3a ### chr5 rmsk gene 18746584 18751737 . + . gene_id "HERVL_5p14.3a"; transcript_id "HERVL_5p14.3a"; locus "HERVL_5p14.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0481"; model_cov "5196"; model_pct "91.9"; chr5 rmsk exon 18746584 18751737 39891 + . gene_id "HERVL_5p14.3a"; transcript_id "HERVL_5p14.3a"; locus "HERVL_5p14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0481"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-456"; repStart "2"; ### HML5_5p14.3 ### chr5 rmsk gene 18782392 18785922 . - . gene_id "HML5_5p14.3"; transcript_id "HML5_5p14.3"; locus "HML5_5p14.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0039"; model_cov "3853"; model_pct "56.4"; chr5 rmsk exon 18782392 18782827 2568 - . gene_id "HML5_5p14.3"; transcript_id "HML5_5p14.3"; locus "HML5_5p14.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0039"; repClass "LTR"; repEnd "428"; repFamily "ERVK"; repLeft "1"; repStart "-30"; chr5 rmsk exon 18782828 18785159 8650 - . gene_id "HML5_5p14.3"; transcript_id "HML5_5p14.3"; locus "HML5_5p14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0039"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2248"; repStart "-1502"; chr5 rmsk exon 18785152 18785922 4869 - . gene_id "HML5_5p14.3"; transcript_id "HML5_5p14.3"; locus "HML5_5p14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0039"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "215"; repStart "-5856"; ### HERVL18_5p14.3 ### chr5 rmsk gene 18792249 18794461 . + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0054"; model_cov "1981"; model_pct "32.8"; chr5 rmsk exon 18792249 18792613 2111 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr5 rmsk exon 18792650 18793087 2017 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "-5513"; repStart "95"; chr5 rmsk exon 18793057 18793655 2064 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1149"; chr5 rmsk exon 18793655 18793912 1261 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "2450"; repFamily "ERVL"; repLeft "-3597"; repStart "2119"; chr5 rmsk exon 18793914 18794282 2080 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2959"; repStart "2720"; chr5 rmsk exon 18794279 18794461 1283 + . gene_id "HERVL18_5p14.3"; transcript_id "HERVL18_5p14.3"; locus "HERVL18_5p14.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0054"; repClass "LTR"; repEnd "3134"; repFamily "ERVL"; repLeft "-2913"; repStart "2952"; ### ERV316A3_5p14.3e ### chr5 rmsk gene 19001542 19004680 . - . gene_id "ERV316A3_5p14.3e"; transcript_id "ERV316A3_5p14.3e"; locus "ERV316A3_5p14.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0951"; model_cov "2341"; model_pct "44.8"; chr5 rmsk exon 19001542 19001684 597 - . gene_id "ERV316A3_5p14.3e"; transcript_id "ERV316A3_5p14.3e"; locus "ERV316A3_5p14.3e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0951"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "312"; repStart "0"; chr5 rmsk exon 19001706 19003671 1360 - . gene_id "ERV316A3_5p14.3e"; transcript_id "ERV316A3_5p14.3e"; locus "ERV316A3_5p14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0951"; repClass "LTR"; repEnd "4109"; repFamily "ERVL"; repLeft "2213"; repStart "-1117"; chr5 rmsk exon 19003744 19003978 302 - . gene_id "ERV316A3_5p14.3e"; transcript_id "ERV316A3_5p14.3e"; locus "ERV316A3_5p14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0951"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "984"; repStart "-4007"; chr5 rmsk exon 19004473 19004680 254 - . gene_id "ERV316A3_5p14.3e"; transcript_id "ERV316A3_5p14.3e"; locus "ERV316A3_5p14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0951"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "722"; repStart "-4294"; ### HERV9_5p14.3a ### chr5 rmsk gene 19302879 19307739 . - . gene_id "HERV9_5p14.3a"; transcript_id "HERV9_5p14.3a"; locus "HERV9_5p14.3a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0049"; model_cov "4045"; model_pct "47.9"; chr5 rmsk exon 19302879 19306917 31161 - . gene_id "HERV9_5p14.3a"; transcript_id "HERV9_5p14.3a"; locus "HERV9_5p14.3a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0049"; repClass "LTR"; repEnd "4046"; repFamily "ERV1"; repLeft "1"; repStart "-4390"; chr5 rmsk exon 19306918 19307739 4750 - . gene_id "HERV9_5p14.3a"; transcript_id "HERV9_5p14.3a"; locus "HERV9_5p14.3a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0049"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_5p14.3 ### chr5 rmsk gene 19702712 19708946 . + . gene_id "HML3_5p14.3"; transcript_id "HML3_5p14.3"; locus "HML3_5p14.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0088"; model_cov "5224"; model_pct "86.8"; chr5 rmsk exon 19702712 19703193 3354 + . gene_id "HML3_5p14.3"; transcript_id "HML3_5p14.3"; locus "HML3_5p14.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0088"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 19703194 19703888 4811 + . gene_id "HML3_5p14.3"; transcript_id "HML3_5p14.3"; locus "HML3_5p14.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0088"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "-5342"; repStart "1"; chr5 rmsk exon 19703885 19708460 27925 + . gene_id "HML3_5p14.3"; transcript_id "HML3_5p14.3"; locus "HML3_5p14.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0088"; repClass "LTR"; repEnd "4771"; repFamily "ERVK"; repLeft "-1250"; repStart "225"; chr5 rmsk exon 19708465 19708946 3409 + . gene_id "HML3_5p14.3"; transcript_id "HML3_5p14.3"; locus "HML3_5p14.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0088"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_5p14.3b ### chr5 rmsk gene 19755387 19761567 . - . gene_id "HERVL_5p14.3b"; transcript_id "HERVL_5p14.3b"; locus "HERVL_5p14.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0483"; model_cov "5591"; model_pct "98.9"; chr5 rmsk exon 19755387 19755431 329 - . gene_id "HERVL_5p14.3b"; transcript_id "HERVL_5p14.3b"; locus "HERVL_5p14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0483"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr5 rmsk exon 19755460 19755500 277 - . gene_id "HERVL_5p14.3b"; transcript_id "HERVL_5p14.3b"; locus "HERVL_5p14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0483"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "367"; repStart "-42"; chr5 rmsk exon 19755627 19756020 2891 - . gene_id "HERVL_5p14.3b"; transcript_id "HERVL_5p14.3b"; locus "HERVL_5p14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0483"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; chr5 rmsk exon 19756021 19761567 41729 - . gene_id "HERVL_5p14.3b"; transcript_id "HERVL_5p14.3b"; locus "HERVL_5p14.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0483"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "63"; repStart "0"; ### HERVL_5p14.3c ### chr5 rmsk gene 20341120 20343479 . + . gene_id "HERVL_5p14.3c"; transcript_id "HERVL_5p14.3c"; locus "HERVL_5p14.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0484"; model_cov "1846"; model_pct "32.6"; chr5 rmsk exon 20341120 20341510 2815 + . gene_id "HERVL_5p14.3c"; transcript_id "HERVL_5p14.3c"; locus "HERVL_5p14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0484"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr5 rmsk exon 20341640 20343479 13875 + . gene_id "HERVL_5p14.3c"; transcript_id "HERVL_5p14.3c"; locus "HERVL_5p14.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0484"; repClass "LTR"; repEnd "1848"; repFamily "ERVL"; repLeft "-3806"; repStart "2"; ### ERVLE_5p14.3a ### chr5 rmsk gene 20564697 20566277 . - . gene_id "ERVLE_5p14.3a"; transcript_id "ERVLE_5p14.3a"; locus "ERVLE_5p14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1294"; model_cov "1595"; model_pct "28.1"; chr5 rmsk exon 20564697 20566277 1593 - . gene_id "ERVLE_5p14.3a"; transcript_id "ERVLE_5p14.3a"; locus "ERVLE_5p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1294"; repClass "LTR"; repEnd "2216"; repFamily "ERVL"; repLeft "621"; repStart "-3451"; ### ERVLB4_5p14.3b ### chr5 rmsk gene 20674777 20677546 . - . gene_id "ERVLB4_5p14.3b"; transcript_id "ERVLB4_5p14.3b"; locus "ERVLB4_5p14.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0584"; model_cov "2088"; model_pct "36.5"; chr5 rmsk exon 20674777 20674813 8259 - . gene_id "ERVLB4_5p14.3b"; transcript_id "ERVLB4_5p14.3b"; locus "ERVLB4_5p14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0584"; repClass "LTR"; repEnd "5446"; repFamily "ERVL"; repLeft "5416"; repStart "-268"; chr5 rmsk exon 20674882 20675686 8259 - . gene_id "ERVLB4_5p14.3b"; transcript_id "ERVLB4_5p14.3b"; locus "ERVLB4_5p14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0584"; repClass "LTR"; repEnd "5415"; repFamily "ERVL"; repLeft "4600"; repStart "-299"; chr5 rmsk exon 20675997 20676766 8259 - . gene_id "ERVLB4_5p14.3b"; transcript_id "ERVLB4_5p14.3b"; locus "ERVLB4_5p14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0584"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "3827"; repStart "-1115"; chr5 rmsk exon 20677074 20677546 2563 - . gene_id "ERVLB4_5p14.3b"; transcript_id "ERVLB4_5p14.3b"; locus "ERVLB4_5p14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0584"; repClass "LTR"; repEnd "3561"; repFamily "ERVL"; repLeft "3090"; repStart "-2153"; ### HERVL_5p14.3d ### chr5 rmsk gene 20820918 20825424 . - . gene_id "HERVL_5p14.3d"; transcript_id "HERVL_5p14.3d"; locus "HERVL_5p14.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0485"; model_cov "4041"; model_pct "71.5"; chr5 rmsk exon 20820918 20824932 30586 - . gene_id "HERVL_5p14.3d"; transcript_id "HERVL_5p14.3d"; locus "HERVL_5p14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0485"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "3"; repStart "-1610"; chr5 rmsk exon 20824946 20824982 2750 - . gene_id "HERVL_5p14.3d"; transcript_id "HERVL_5p14.3d"; locus "HERVL_5p14.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0485"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "406"; repStart "0"; chr5 rmsk exon 20825030 20825424 2750 - . gene_id "HERVL_5p14.3d"; transcript_id "HERVL_5p14.3d"; locus "HERVL_5p14.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0485"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "2"; repStart "-39"; ### ERV316A3_5p14.3f ### chr5 rmsk gene 21103390 21105567 . + . gene_id "ERV316A3_5p14.3f"; transcript_id "ERV316A3_5p14.3f"; locus "ERV316A3_5p14.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0954"; model_cov "1604"; model_pct "30.7"; chr5 rmsk exon 21103390 21103422 343 + . gene_id "ERV316A3_5p14.3f"; transcript_id "ERV316A3_5p14.3f"; locus "ERV316A3_5p14.3f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0954"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-39"; repStart "409"; chr5 rmsk exon 21103565 21103764 498 + . gene_id "ERV316A3_5p14.3f"; transcript_id "ERV316A3_5p14.3f"; locus "ERV316A3_5p14.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0954"; repClass "LTR"; repEnd "312"; repFamily "ERVL"; repLeft "-4914"; repStart "102"; chr5 rmsk exon 21104190 21105567 2621 + . gene_id "ERV316A3_5p14.3f"; transcript_id "ERV316A3_5p14.3f"; locus "ERV316A3_5p14.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0954"; repClass "LTR"; repEnd "2373"; repFamily "ERVL"; repLeft "-2853"; repStart "979"; ### MER4_5p14.3a ### chr5 rmsk gene 21105639 21107410 . - . gene_id "MER4_5p14.3a"; transcript_id "MER4_5p14.3a"; locus "MER4_5p14.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0271"; model_cov "1841"; model_pct "27.9"; chr5 rmsk exon 21105639 21107410 10523 - . gene_id "MER4_5p14.3a"; transcript_id "MER4_5p14.3a"; locus "MER4_5p14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0271"; repClass "LTR"; repEnd "6352"; repFamily "ERV1"; repLeft "4511"; repStart "-246"; ### MER4_5p14.3b ### chr5 rmsk gene 21113479 21117460 . - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0272"; model_cov "3241"; model_pct "49.1"; chr5 rmsk exon 21113479 21114056 3518 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "4516"; repFamily "ERV1"; repLeft "3912"; repStart "-2082"; chr5 rmsk exon 21114057 21114631 2489 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "2248"; repStart "-3321"; chr5 rmsk exon 21114891 21115555 4012 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1804"; repStart "-4103"; chr5 rmsk exon 21115554 21115643 1286 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "2388"; repFamily "ERV1"; repLeft "2308"; repStart "-4210"; chr5 rmsk exon 21115948 21116243 1304 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "1005"; repStart "-5330"; chr5 rmsk exon 21116251 21116503 2574 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "579"; repFamily "ERV1"; repLeft "308"; repStart "-6019"; chr5 rmsk exon 21116777 21116843 2574 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "307"; repFamily "ERV1"; repLeft "237"; repStart "-6291"; chr5 rmsk exon 21116878 21117078 2574 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0272"; repClass "LTR"; repEnd "236"; repFamily "ERV1"; repLeft "3"; repStart "-6362"; chr5 rmsk exon 21117083 21117460 2174 - . gene_id "MER4_5p14.3b"; transcript_id "MER4_5p14.3b"; locus "MER4_5p14.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0272"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "55"; repStart "-1"; ### HML6_5p14.3 ### chr5 rmsk gene 21282470 21284416 . - . gene_id "HML6_5p14.3"; transcript_id "HML6_5p14.3"; locus "HML6_5p14.3"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0021"; model_cov "1240"; model_pct "17.2"; chr5 rmsk exon 21282470 21282602 656 - . gene_id "HML6_5p14.3"; transcript_id "HML6_5p14.3"; locus "HML6_5p14.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0021"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "317"; repStart "-46"; chr5 rmsk exon 21282603 21283952 4630 - . gene_id "HML6_5p14.3"; transcript_id "HML6_5p14.3"; locus "HML6_5p14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0021"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "1280"; repStart "-4967"; chr5 rmsk exon 21284095 21284297 636 - . gene_id "HML6_5p14.3"; transcript_id "HML6_5p14.3"; locus "HML6_5p14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0021"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "15"; repStart "-6970"; chr5 rmsk exon 21284362 21284416 264 - . gene_id "HML6_5p14.3"; transcript_id "HML6_5p14.3"; locus "HML6_5p14.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0021"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "110"; repStart "-7024"; ### PRIMA4_5p14.3 ### chr5 rmsk gene 21618528 21619560 . + . gene_id "PRIMA4_5p14.3"; transcript_id "PRIMA4_5p14.3"; locus "PRIMA4_5p14.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0073"; model_cov "1020"; model_pct "12.3"; chr5 rmsk exon 21618528 21619560 4909 + . gene_id "PRIMA4_5p14.3"; transcript_id "PRIMA4_5p14.3"; locus "PRIMA4_5p14.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0073"; repClass "LTR"; repEnd "1021"; repFamily "ERV1"; repLeft "-7249"; repStart "1"; ### MER4B_5p14.3 ### chr5 rmsk gene 21619579 21624564 . + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0152"; model_cov "5212"; model_pct "77.1"; chr5 rmsk exon 21619579 21619656 251 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "913"; repFamily "ERV1"; repLeft "-5845"; repStart "847"; chr5 rmsk exon 21619722 21619994 1380 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "1427"; repFamily "ERV1"; repLeft "-5331"; repStart "1153"; chr5 rmsk exon 21620012 21622016 7074 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "3101"; repFamily "ERV1"; repLeft "-3657"; repStart "972"; chr5 rmsk exon 21622012 21622134 608 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "3545"; repFamily "ERV1"; repLeft "-3213"; repStart "3423"; chr5 rmsk exon 21622169 21622631 2901 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3546"; chr5 rmsk exon 21622631 21624564 9505 + . gene_id "MER4B_5p14.3"; transcript_id "MER4B_5p14.3"; locus "MER4B_5p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0152"; repClass "LTR"; repEnd "6531"; repFamily "ERV1"; repLeft "-227"; repStart "4452"; ### HERVL_5p14.3e ### chr5 rmsk gene 21859468 21860986 . + . gene_id "HERVL_5p14.3e"; transcript_id "HERVL_5p14.3e"; locus "HERVL_5p14.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0488"; model_cov "990"; model_pct "17.5"; chr5 rmsk exon 21859468 21860442 6846 + . gene_id "HERVL_5p14.3e"; transcript_id "HERVL_5p14.3e"; locus "HERVL_5p14.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0488"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4664"; chr5 rmsk exon 21860443 21860986 1904 + . gene_id "HERVL_5p14.3e"; transcript_id "HERVL_5p14.3e"; locus "HERVL_5p14.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0488"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVL_5p14.3a ### chr5 rmsk gene 21868916 21870425 . + . gene_id "ERVL_5p14.3a"; transcript_id "ERVL_5p14.3a"; locus "ERVL_5p14.3a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0132"; model_cov "843"; model_pct "14.6"; chr5 rmsk exon 21868916 21869089 1132 + . gene_id "ERVL_5p14.3a"; transcript_id "ERVL_5p14.3a"; locus "ERVL_5p14.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0132"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-775"; repStart "4808"; chr5 rmsk exon 21869193 21869826 3446 + . gene_id "ERVL_5p14.3a"; transcript_id "ERVL_5p14.3a"; locus "ERVL_5p14.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0132"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5088"; chr5 rmsk exon 21869827 21869876 1236 + . gene_id "ERVL_5p14.3a"; transcript_id "ERVL_5p14.3a"; locus "ERVL_5p14.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0132"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "-504"; repStart "1"; chr5 rmsk exon 21870256 21870425 1236 + . gene_id "ERVL_5p14.3a"; transcript_id "ERVL_5p14.3a"; locus "ERVL_5p14.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0132"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "-337"; repStart "51"; ### ERVLB4_5p14.3c ### chr5 rmsk gene 22063622 22070684 . + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0586"; model_cov "5675"; model_pct "99.3"; chr5 rmsk exon 22063622 22063953 1343 + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0586"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "-49"; repStart "1"; chr5 rmsk exon 22064395 22066165 12351 + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0586"; repClass "LTR"; repEnd "1868"; repFamily "ERVL"; repLeft "-3846"; repStart "5"; chr5 rmsk exon 22066340 22067725 12351 + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0586"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "-2443"; repStart "1869"; chr5 rmsk exon 22068026 22070381 12820 + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0586"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3304"; chr5 rmsk exon 22070393 22070684 1186 + . gene_id "ERVLB4_5p14.3c"; transcript_id "ERVLB4_5p14.3c"; locus "ERVLB4_5p14.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0586"; repClass "LTR"; repEnd "353"; repFamily "ERVL"; repLeft "-61"; repStart "48"; ### HERVH_5p14.3b ### chr5 rmsk gene 22094702 22100139 . + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0471"; model_cov "5062"; model_pct "65.6"; chr5 rmsk exon 22094702 22095061 2249 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 22095064 22098384 15978 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr5 rmsk exon 22098375 22098880 3182 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 22098883 22099545 4573 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 22099547 22099762 1416 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 22099760 22100139 2375 + . gene_id "HERVH_5p14.3b"; transcript_id "HERVH_5p14.3b"; locus "HERVH_5p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0471"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7321"; ### ERVLB4_5p14.3d ### chr5 rmsk gene 22526289 22529721 . - . gene_id "ERVLB4_5p14.3d"; transcript_id "ERVLB4_5p14.3d"; locus "ERVLB4_5p14.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0587"; model_cov "2746"; model_pct "48.1"; chr5 rmsk exon 22526289 22528972 7653 - . gene_id "ERVLB4_5p14.3d"; transcript_id "ERVLB4_5p14.3d"; locus "ERVLB4_5p14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0587"; repClass "LTR"; repEnd "2747"; repFamily "ERVL"; repLeft "1"; repStart "-2967"; chr5 rmsk exon 22528973 22529026 243 - . gene_id "ERVLB4_5p14.3d"; transcript_id "ERVLB4_5p14.3d"; locus "ERVLB4_5p14.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0587"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "503"; repStart "0"; chr5 rmsk exon 22529161 22529188 2538 - . gene_id "ERVLB4_5p14.3d"; transcript_id "ERVLB4_5p14.3d"; locus "ERVLB4_5p14.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0587"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "494"; repStart "-36"; chr5 rmsk exon 22529241 22529721 2538 - . gene_id "ERVLB4_5p14.3d"; transcript_id "ERVLB4_5p14.3d"; locus "ERVLB4_5p14.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0587"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "1"; repStart "-63"; ### ERV316A3_5p14.3g ### chr5 rmsk gene 22879007 22881020 . + . gene_id "ERV316A3_5p14.3g"; transcript_id "ERV316A3_5p14.3g"; locus "ERV316A3_5p14.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0957"; model_cov "1141"; model_pct "21.8"; chr5 rmsk exon 22879007 22879366 879 + . gene_id "ERV316A3_5p14.3g"; transcript_id "ERV316A3_5p14.3g"; locus "ERV316A3_5p14.3g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0957"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "89"; chr5 rmsk exon 22879899 22881020 1941 + . gene_id "ERV316A3_5p14.3g"; transcript_id "ERV316A3_5p14.3g"; locus "ERV316A3_5p14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0957"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "4036"; ### HERV9_5p14.3b ### chr5 rmsk gene 22929974 22935380 . + . gene_id "HERV9_5p14.3b"; transcript_id "HERV9_5p14.3b"; locus "HERV9_5p14.3b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0050"; model_cov "5016"; model_pct "59.5"; chr5 rmsk exon 22929974 22934868 23785 + . gene_id "HERV9_5p14.3b"; transcript_id "HERV9_5p14.3b"; locus "HERV9_5p14.3b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0050"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "3420"; chr5 rmsk exon 22934869 22935380 3512 + . gene_id "HERV9_5p14.3b"; transcript_id "HERV9_5p14.3b"; locus "HERV9_5p14.3b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0050"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5p14.3b ### chr5 rmsk gene 22945714 22947090 . + . gene_id "ERVLE_5p14.3b"; transcript_id "ERVLE_5p14.3b"; locus "ERVLE_5p14.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1299"; model_cov "1286"; model_pct "22.7"; chr5 rmsk exon 22945714 22946981 3594 + . gene_id "ERVLE_5p14.3b"; transcript_id "ERVLE_5p14.3b"; locus "ERVLE_5p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1299"; repClass "LTR"; repEnd "5629"; repFamily "ERVL"; repLeft "-38"; repStart "4343"; chr5 rmsk exon 22947003 22947090 243 + . gene_id "ERVLE_5p14.3b"; transcript_id "ERVLE_5p14.3b"; locus "ERVLE_5p14.3b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1299"; repClass "LTR"; repEnd "105"; repFamily "ERVL"; repLeft "-523"; repStart "11"; ### ERV316A3_5p14.3h ### chr5 rmsk gene 23025611 23027969 . - . gene_id "ERV316A3_5p14.3h"; transcript_id "ERV316A3_5p14.3h"; locus "ERV316A3_5p14.3h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0958"; model_cov "2396"; model_pct "45.8"; chr5 rmsk exon 23025611 23027969 4881 - . gene_id "ERV316A3_5p14.3h"; transcript_id "ERV316A3_5p14.3h"; locus "ERV316A3_5p14.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0958"; repClass "LTR"; repEnd "2727"; repFamily "ERVL"; repLeft "331"; repStart "-2499"; ### ERV316A3_5p14.3i ### chr5 rmsk gene 23074594 23077216 . - . gene_id "ERV316A3_5p14.3i"; transcript_id "ERV316A3_5p14.3i"; locus "ERV316A3_5p14.3i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0959"; model_cov "1839"; model_pct "35.2"; chr5 rmsk exon 23074594 23075181 1424 - . gene_id "ERV316A3_5p14.3i"; transcript_id "ERV316A3_5p14.3i"; locus "ERV316A3_5p14.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0959"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "4592"; repStart "-55"; chr5 rmsk exon 23075478 23075818 1424 - . gene_id "ERV316A3_5p14.3i"; transcript_id "ERV316A3_5p14.3i"; locus "ERV316A3_5p14.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0959"; repClass "LTR"; repEnd "4591"; repFamily "ERVL"; repLeft "4278"; repStart "-635"; chr5 rmsk exon 23076135 23076864 1424 - . gene_id "ERV316A3_5p14.3i"; transcript_id "ERV316A3_5p14.3i"; locus "ERV316A3_5p14.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0959"; repClass "LTR"; repEnd "4277"; repFamily "ERVL"; repLeft "3474"; repStart "-949"; chr5 rmsk exon 23077080 23077216 252 - . gene_id "ERV316A3_5p14.3i"; transcript_id "ERV316A3_5p14.3i"; locus "ERV316A3_5p14.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0959"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "2946"; repStart "-2136"; ### ERV316A3_5p14.3j ### chr5 rmsk gene 23084718 23089581 . - . gene_id "ERV316A3_5p14.3j"; transcript_id "ERV316A3_5p14.3j"; locus "ERV316A3_5p14.3j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0962"; model_cov "3977"; model_pct "76.1"; chr5 rmsk exon 23084718 23085056 968 - . gene_id "ERV316A3_5p14.3j"; transcript_id "ERV316A3_5p14.3j"; locus "ERV316A3_5p14.3j"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0962"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "69"; repStart "-4"; chr5 rmsk exon 23085116 23087546 2163 - . gene_id "ERV316A3_5p14.3j"; transcript_id "ERV316A3_5p14.3j"; locus "ERV316A3_5p14.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0962"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "2567"; repStart "-23"; chr5 rmsk exon 23088220 23089581 1597 - . gene_id "ERV316A3_5p14.3j"; transcript_id "ERV316A3_5p14.3j"; locus "ERV316A3_5p14.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0962"; repClass "LTR"; repEnd "2297"; repFamily "ERVL"; repLeft "956"; repStart "-2929"; ### ERVL_5p14.3b ### chr5 rmsk gene 23098611 23100255 . - . gene_id "ERVL_5p14.3b"; transcript_id "ERVL_5p14.3b"; locus "ERVL_5p14.3b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0133"; model_cov "819"; model_pct "14.2"; chr5 rmsk exon 23098611 23099107 1640 - . gene_id "ERVL_5p14.3b"; transcript_id "ERVL_5p14.3b"; locus "ERVL_5p14.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0133"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "5"; repStart "-8"; chr5 rmsk exon 23099138 23099921 4160 - . gene_id "ERVL_5p14.3b"; transcript_id "ERVL_5p14.3b"; locus "ERVL_5p14.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0133"; repClass "LTR"; repEnd "5522"; repFamily "ERVL"; repLeft "4722"; repStart "-235"; chr5 rmsk exon 23100236 23100255 4160 - . gene_id "ERVL_5p14.3b"; transcript_id "ERVL_5p14.3b"; locus "ERVL_5p14.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0133"; repClass "LTR"; repEnd "4721"; repFamily "ERVL"; repLeft "4702"; repStart "-1036"; ### ERVLB4_5p14.3e ### chr5 rmsk gene 23100254 23103203 . - . gene_id "ERVLB4_5p14.3e"; transcript_id "ERVLB4_5p14.3e"; locus "ERVLB4_5p14.3e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0588"; model_cov "2096"; model_pct "36.7"; chr5 rmsk exon 23100254 23101375 5086 - . gene_id "ERVLB4_5p14.3e"; transcript_id "ERVLB4_5p14.3e"; locus "ERVLB4_5p14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0588"; repClass "LTR"; repEnd "2253"; repFamily "ERVL"; repLeft "1083"; repStart "-3461"; chr5 rmsk exon 23102040 23102162 720 - . gene_id "ERVLB4_5p14.3e"; transcript_id "ERVLB4_5p14.3e"; locus "ERVLB4_5p14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0588"; repClass "LTR"; repEnd "1094"; repFamily "ERVL"; repLeft "971"; repStart "-4620"; chr5 rmsk exon 23102162 23102829 2829 - . gene_id "ERVLB4_5p14.3e"; transcript_id "ERVLB4_5p14.3e"; locus "ERVLB4_5p14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0588"; repClass "LTR"; repEnd "840"; repFamily "ERVL"; repLeft "193"; repStart "-4874"; chr5 rmsk exon 23103058 23103203 535 - . gene_id "ERVLB4_5p14.3e"; transcript_id "ERVLB4_5p14.3e"; locus "ERVLB4_5p14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0588"; repClass "LTR"; repEnd "204"; repFamily "ERVL"; repLeft "48"; repStart "-5510"; ### HERVL40_5p14.3 ### chr5 rmsk gene 23216957 23220893 . + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0150"; model_cov "1129"; model_pct "20.4"; chr5 rmsk exon 23216957 23217401 1133 + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0150"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "65"; chr5 rmsk exon 23217418 23217737 954 + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0150"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-5176"; repStart "28"; chr5 rmsk exon 23218815 23219351 1133 + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0150"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "-3915"; repStart "1064"; chr5 rmsk exon 23220047 23220390 782 + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0150"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5278"; chr5 rmsk exon 23220403 23220893 1528 + . gene_id "HERVL40_5p14.3"; transcript_id "HERVL40_5p14.3"; locus "HERVL40_5p14.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0150"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "13"; ### ERVLB4_5p14.3f ### chr5 rmsk gene 23225024 23227740 . + . gene_id "ERVLB4_5p14.3f"; transcript_id "ERVLB4_5p14.3f"; locus "ERVLB4_5p14.3f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0589"; model_cov "1004"; model_pct "17.6"; chr5 rmsk exon 23225024 23225255 421 + . gene_id "ERVLB4_5p14.3f"; transcript_id "ERVLB4_5p14.3f"; locus "ERVLB4_5p14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0589"; repClass "LTR"; repEnd "3927"; repFamily "ERVL"; repLeft "-1787"; repStart "3695"; chr5 rmsk exon 23226314 23226646 782 + . gene_id "ERVLB4_5p14.3f"; transcript_id "ERVLB4_5p14.3f"; locus "ERVLB4_5p14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0589"; repClass "LTR"; repEnd "4598"; repFamily "ERVL"; repLeft "-1116"; repStart "4264"; chr5 rmsk exon 23227317 23227740 697 + . gene_id "ERVLB4_5p14.3f"; transcript_id "ERVLB4_5p14.3f"; locus "ERVLB4_5p14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0589"; repClass "LTR"; repEnd "5286"; repFamily "ERVL"; repLeft "-428"; repStart "4848"; ### ERV316A3_5p14.3k ### chr5 rmsk gene 23253038 23258967 . + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0963"; model_cov "3220"; model_pct "61.6"; chr5 rmsk exon 23253038 23253315 724 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "-195"; repStart "1"; chr5 rmsk exon 23253465 23253647 724 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "257"; chr5 rmsk exon 23253666 23254443 711 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "1088"; repFamily "ERVL"; repLeft "-4138"; repStart "238"; chr5 rmsk exon 23254772 23255075 395 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "1546"; repFamily "ERVL"; repLeft "-3680"; repStart "1232"; chr5 rmsk exon 23255265 23256378 2374 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "2414"; repFamily "ERVL"; repLeft "-2812"; repStart "1310"; chr5 rmsk exon 23256766 23257266 2374 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "2942"; repFamily "ERVL"; repLeft "-2284"; repStart "2415"; chr5 rmsk exon 23257718 23257998 706 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2138"; repStart "2805"; chr5 rmsk exon 23258401 23258547 706 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "3231"; repFamily "ERVL"; repLeft "-1995"; repStart "3089"; chr5 rmsk exon 23258756 23258815 239 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "-329"; repStart "62"; chr5 rmsk exon 23258840 23258967 265 + . gene_id "ERV316A3_5p14.3k"; transcript_id "ERV316A3_5p14.3k"; locus "ERV316A3_5p14.3k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0963"; repClass "LTR"; repEnd "307"; repFamily "ERVL"; repLeft "-144"; repStart "179"; ### HERVL18_5p14.2 ### chr5 rmsk gene 23422658 23425618 . + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0056"; model_cov "2472"; model_pct "40.9"; chr5 rmsk exon 23422658 23423690 4698 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "706"; chr5 rmsk exon 23423690 23423993 1332 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "2484"; repFamily "ERVL"; repLeft "-3563"; repStart "2119"; chr5 rmsk exon 23423963 23424762 4588 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2467"; repStart "2720"; chr5 rmsk exon 23424764 23424858 649 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr5 rmsk exon 23424859 23424908 302 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "-789"; repStart "5209"; chr5 rmsk exon 23425211 23425618 1892 + . gene_id "HERVL18_5p14.2"; transcript_id "HERVL18_5p14.2"; locus "HERVL18_5p14.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0056"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_5p14.2a ### chr5 rmsk gene 23439026 23441097 . - . gene_id "ERV316A3_5p14.2a"; transcript_id "ERV316A3_5p14.2a"; locus "ERV316A3_5p14.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0964"; model_cov "1561"; model_pct "29.9"; chr5 rmsk exon 23439026 23439452 940 - . gene_id "ERV316A3_5p14.2a"; transcript_id "ERV316A3_5p14.2a"; locus "ERV316A3_5p14.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0964"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "1"; repStart "-3"; chr5 rmsk exon 23439537 23441097 1719 - . gene_id "ERV316A3_5p14.2a"; transcript_id "ERV316A3_5p14.2a"; locus "ERV316A3_5p14.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0964"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "3581"; repStart "-84"; ### HML1_5p14.2a ### chr5 rmsk gene 23687166 23690734 . + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0028"; model_cov "2230"; model_pct "36.6"; chr5 rmsk exon 23687166 23687564 2107 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr5 rmsk exon 23687565 23688269 5239 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "-5398"; repStart "1"; chr5 rmsk exon 23688304 23688758 3254 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "-3921"; repStart "1704"; chr5 rmsk exon 23689776 23689868 696 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "-1698"; repStart "4306"; chr5 rmsk exon 23689868 23690357 2052 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "-495"; repStart "5011"; chr5 rmsk exon 23690359 23690545 1703 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "5937"; repFamily "ERVK"; repLeft "-159"; repStart "5715"; chr5 rmsk exon 23690603 23690734 1703 + . gene_id "HML1_5p14.2a"; transcript_id "HML1_5p14.2a"; locus "HML1_5p14.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0028"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5938"; ### ERV316A3_5p14.2b ### chr5 rmsk gene 23759825 23763489 . + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0965"; model_cov "1683"; model_pct "32.2"; chr5 rmsk exon 23759825 23759898 286 + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0965"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "-2738"; repStart "2415"; chr5 rmsk exon 23759936 23760003 273 + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0965"; repClass "LTR"; repEnd "2943"; repFamily "ERVL"; repLeft "-2283"; repStart "2877"; chr5 rmsk exon 23760593 23761738 1485 + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0965"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "-751"; repStart "3265"; chr5 rmsk exon 23762558 23762898 539 + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0965"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "-149"; repStart "4743"; chr5 rmsk exon 23763265 23763489 325 + . gene_id "ERV316A3_5p14.2b"; transcript_id "ERV316A3_5p14.2b"; locus "ERV316A3_5p14.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0965"; repClass "LTR"; repEnd "237"; repFamily "ERVL"; repLeft "-214"; repStart "3"; ### ERVLE_5p14.2a ### chr5 rmsk gene 23776225 23776814 . - . gene_id "ERVLE_5p14.2a"; transcript_id "ERVLE_5p14.2a"; locus "ERVLE_5p14.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1302"; model_cov "602"; model_pct "10.6"; chr5 rmsk exon 23776225 23776814 1702 - . gene_id "ERVLE_5p14.2a"; transcript_id "ERVLE_5p14.2a"; locus "ERVLE_5p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1302"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "5"; repStart "-5060"; ### HERVL_5p14.2 ### chr5 rmsk gene 23804138 23807835 . + . gene_id "HERVL_5p14.2"; transcript_id "HERVL_5p14.2"; locus "HERVL_5p14.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0489"; model_cov "3139"; model_pct "55.5"; chr5 rmsk exon 23804138 23804535 2723 + . gene_id "HERVL_5p14.2"; transcript_id "HERVL_5p14.2"; locus "HERVL_5p14.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0489"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-35"; repStart "1"; chr5 rmsk exon 23804641 23805755 6765 + . gene_id "HERVL_5p14.2"; transcript_id "HERVL_5p14.2"; locus "HERVL_5p14.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0489"; repClass "LTR"; repEnd "1065"; repFamily "ERVL"; repLeft "-4589"; repStart "-12"; chr5 rmsk exon 23805754 23807835 15847 + . gene_id "HERVL_5p14.2"; transcript_id "HERVL_5p14.2"; locus "HERVL_5p14.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0489"; repClass "LTR"; repEnd "4619"; repFamily "ERVL"; repLeft "-1035"; repStart "2557"; ### ERVLE_5p14.2b ### chr5 rmsk gene 23828565 23830332 . - . gene_id "ERVLE_5p14.2b"; transcript_id "ERVLE_5p14.2b"; locus "ERVLE_5p14.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1303"; model_cov "565"; model_pct "10.0"; chr5 rmsk exon 23828565 23828660 311 - . gene_id "ERVLE_5p14.2b"; transcript_id "ERVLE_5p14.2b"; locus "ERVLE_5p14.2b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1303"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "450"; repStart "-81"; chr5 rmsk exon 23828771 23828908 699 - . gene_id "ERVLE_5p14.2b"; transcript_id "ERVLE_5p14.2b"; locus "ERVLE_5p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1303"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "1484"; repStart "-4046"; chr5 rmsk exon 23829920 23830332 1369 - . gene_id "ERVLE_5p14.2b"; transcript_id "ERVLE_5p14.2b"; locus "ERVLE_5p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1303"; repClass "LTR"; repEnd "1429"; repFamily "ERVL"; repLeft "1001"; repStart "-4238"; ### ERVLE_5p14.2c ### chr5 rmsk gene 23837232 23838544 . - . gene_id "ERVLE_5p14.2c"; transcript_id "ERVLE_5p14.2c"; locus "ERVLE_5p14.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1304"; model_cov "911"; model_pct "16.1"; chr5 rmsk exon 23837232 23837875 1881 - . gene_id "ERVLE_5p14.2c"; transcript_id "ERVLE_5p14.2c"; locus "ERVLE_5p14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1304"; repClass "LTR"; repEnd "982"; repFamily "ERVL"; repLeft "288"; repStart "-4685"; chr5 rmsk exon 23838338 23838544 969 - . gene_id "ERVLE_5p14.2c"; transcript_id "ERVLE_5p14.2c"; locus "ERVLE_5p14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1304"; repClass "LTR"; repEnd "173"; repFamily "ERVL"; repLeft "-44"; repStart "-5494"; ### MER61_5p14.2 ### chr5 rmsk gene 23863893 23867155 . + . gene_id "MER61_5p14.2"; transcript_id "MER61_5p14.2"; locus "MER61_5p14.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0149"; model_cov "2495"; model_pct "47.8"; chr5 rmsk exon 23863893 23864258 1628 + . gene_id "MER61_5p14.2"; transcript_id "MER61_5p14.2"; locus "MER61_5p14.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0149"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 23864259 23864819 2364 + . gene_id "MER61_5p14.2"; transcript_id "MER61_5p14.2"; locus "MER61_5p14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0149"; repClass "LTR"; repEnd "544"; repFamily "ERV1"; repLeft "-4673"; repStart "1"; chr5 rmsk exon 23865228 23867155 12972 + . gene_id "MER61_5p14.2"; transcript_id "MER61_5p14.2"; locus "MER61_5p14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0149"; repClass "LTR"; repEnd "3343"; repFamily "ERV1"; repLeft "-1874"; repStart "1391"; ### ERVLB4_5p14.2a ### chr5 rmsk gene 24018181 24020095 . - . gene_id "ERVLB4_5p14.2a"; transcript_id "ERVLB4_5p14.2a"; locus "ERVLB4_5p14.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0590"; model_cov "1143"; model_pct "20.0"; chr5 rmsk exon 24018181 24019347 3513 - . gene_id "ERVLB4_5p14.2a"; transcript_id "ERVLB4_5p14.2a"; locus "ERVLB4_5p14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0590"; repClass "LTR"; repEnd "1194"; repFamily "ERVL"; repLeft "51"; repStart "-4520"; chr5 rmsk exon 24019350 24019402 1447 - . gene_id "ERVLB4_5p14.2a"; transcript_id "ERVLB4_5p14.2a"; locus "ERVLB4_5p14.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0590"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "372"; repStart "0"; chr5 rmsk exon 24019727 24020095 1447 - . gene_id "ERVLB4_5p14.2a"; transcript_id "ERVLB4_5p14.2a"; locus "ERVLB4_5p14.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0590"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "1"; repStart "-43"; ### ERVLE_5p14.2d ### chr5 rmsk gene 24048168 24049120 . + . gene_id "ERVLE_5p14.2d"; transcript_id "ERVLE_5p14.2d"; locus "ERVLE_5p14.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1305"; model_cov "985"; model_pct "17.4"; chr5 rmsk exon 24048168 24049120 1184 + . gene_id "ERVLE_5p14.2d"; transcript_id "ERVLE_5p14.2d"; locus "ERVLE_5p14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1305"; repClass "LTR"; repEnd "986"; repFamily "ERVL"; repLeft "-4681"; repStart "1"; ### ERVLE_5p14.2e ### chr5 rmsk gene 24058326 24059658 . + . gene_id "ERVLE_5p14.2e"; transcript_id "ERVLE_5p14.2e"; locus "ERVLE_5p14.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1306"; model_cov "1181"; model_pct "20.8"; chr5 rmsk exon 24058326 24058767 950 + . gene_id "ERVLE_5p14.2e"; transcript_id "ERVLE_5p14.2e"; locus "ERVLE_5p14.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1306"; repClass "LTR"; repEnd "2480"; repFamily "ERVL"; repLeft "-3187"; repStart "2025"; chr5 rmsk exon 24058929 24059054 420 + . gene_id "ERVLE_5p14.2e"; transcript_id "ERVLE_5p14.2e"; locus "ERVLE_5p14.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1306"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2877"; repStart "2662"; chr5 rmsk exon 24059053 24059342 397 + . gene_id "ERVLE_5p14.2e"; transcript_id "ERVLE_5p14.2e"; locus "ERVLE_5p14.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1306"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "-2475"; repStart "2897"; chr5 rmsk exon 24059363 24059658 714 + . gene_id "ERVLE_5p14.2e"; transcript_id "ERVLE_5p14.2e"; locus "ERVLE_5p14.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1306"; repClass "LTR"; repEnd "3547"; repFamily "ERVL"; repLeft "-2120"; repStart "3244"; ### ERVLB4_5p14.2b ### chr5 rmsk gene 24081552 24082377 . - . gene_id "ERVLB4_5p14.2b"; transcript_id "ERVLB4_5p14.2b"; locus "ERVLB4_5p14.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0591"; model_cov "775"; model_pct "13.6"; chr5 rmsk exon 24081552 24081617 293 - . gene_id "ERVLB4_5p14.2b"; transcript_id "ERVLB4_5p14.2b"; locus "ERVLB4_5p14.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0591"; repClass "LTR"; repEnd "662"; repFamily "ERVL"; repLeft "595"; repStart "-1"; chr5 rmsk exon 24081619 24082377 3551 - . gene_id "ERVLB4_5p14.2b"; transcript_id "ERVLB4_5p14.2b"; locus "ERVLB4_5p14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0591"; repClass "LTR"; repEnd "2397"; repFamily "ERVL"; repLeft "1622"; repStart "-3317"; ### ERVLB4_5p14.2c ### chr5 rmsk gene 24082608 24084077 . + . gene_id "ERVLB4_5p14.2c"; transcript_id "ERVLB4_5p14.2c"; locus "ERVLB4_5p14.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0592"; model_cov "989"; model_pct "17.3"; chr5 rmsk exon 24082608 24083119 3722 + . gene_id "ERVLB4_5p14.2c"; transcript_id "ERVLB4_5p14.2c"; locus "ERVLB4_5p14.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0592"; repClass "LTR"; repEnd "2888"; repFamily "ERVL"; repLeft "-2826"; repStart "2374"; chr5 rmsk exon 24083602 24084077 3722 + . gene_id "ERVLB4_5p14.2c"; transcript_id "ERVLB4_5p14.2c"; locus "ERVLB4_5p14.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0592"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-2350"; repStart "2889"; ### HML1_5p14.2b ### chr5 rmsk gene 24308072 24313343 . - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0029"; model_cov "3849"; model_pct "63.1"; chr5 rmsk exon 24308072 24308406 2674 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 24308410 24308522 651 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr5 rmsk exon 24308598 24308814 1554 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5656"; repStart "-199"; chr5 rmsk exon 24308814 24309369 3989 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4928"; repStart "-544"; chr5 rmsk exon 24309360 24310318 7627 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "2861"; repFamily "ERVK"; repLeft "1905"; repStart "-3235"; chr5 rmsk exon 24311093 24313003 14729 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "1906"; repFamily "ERVK"; repLeft "1"; repStart "-4190"; chr5 rmsk exon 24313004 24313343 2553 - . gene_id "HML1_5p14.2b"; transcript_id "HML1_5p14.2b"; locus "HML1_5p14.2b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0029"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_5p14.2f ### chr5 rmsk gene 24333538 24334602 . - . gene_id "ERVLE_5p14.2f"; transcript_id "ERVLE_5p14.2f"; locus "ERVLE_5p14.2f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1308"; model_cov "685"; model_pct "12.1"; chr5 rmsk exon 24333538 24333686 454 - . gene_id "ERVLE_5p14.2f"; transcript_id "ERVLE_5p14.2f"; locus "ERVLE_5p14.2f"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1308"; repClass "LTR"; repEnd "187"; repFamily "ERVL"; repLeft "32"; repStart "-441"; chr5 rmsk exon 24333761 24334071 390 - . gene_id "ERVLE_5p14.2f"; transcript_id "ERVLE_5p14.2f"; locus "ERVLE_5p14.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1308"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "5348"; repStart "-8"; chr5 rmsk exon 24334235 24334602 759 - . gene_id "ERVLE_5p14.2f"; transcript_id "ERVLE_5p14.2f"; locus "ERVLE_5p14.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1308"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4767"; repStart "-526"; ### HERV9_5p14.2 ### chr5 rmsk gene 24387043 24391797 . + . gene_id "HERV9_5p14.2"; transcript_id "HERV9_5p14.2"; locus "HERV9_5p14.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0052"; model_cov "4199"; model_pct "49.8"; chr5 rmsk exon 24387043 24387584 3977 + . gene_id "HERV9_5p14.2"; transcript_id "HERV9_5p14.2"; locus "HERV9_5p14.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0052"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-234"; repStart "1"; chr5 rmsk exon 24387586 24391797 31502 + . gene_id "HERV9_5p14.2"; transcript_id "HERV9_5p14.2"; locus "HERV9_5p14.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0052"; repClass "LTR"; repEnd "4200"; repFamily "ERV1"; repLeft "-4236"; repStart "1"; ### HARLEQUIN_5p14.2 ### chr5 rmsk gene 24391798 24398199 . - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0068"; model_cov "5492"; model_pct "79.6"; chr5 rmsk exon 24391798 24392291 2454 - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0068"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 24392292 24393022 5128 - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0068"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6163"; repStart "0"; chr5 rmsk exon 24393011 24396376 25858 - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0068"; repClass "LTR"; repEnd "5169"; repFamily "ERV1"; repLeft "1818"; repStart "-1727"; chr5 rmsk exon 24396370 24397716 4557 - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0068"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "1"; repStart "-5487"; chr5 rmsk exon 24397717 24398199 2441 - . gene_id "HARLEQUIN_5p14.2"; transcript_id "HARLEQUIN_5p14.2"; locus "HARLEQUIN_5p14.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0068"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_5p14.2c ### chr5 rmsk gene 24427327 24428685 . - . gene_id "ERV316A3_5p14.2c"; transcript_id "ERV316A3_5p14.2c"; locus "ERV316A3_5p14.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0966"; model_cov "1140"; model_pct "21.8"; chr5 rmsk exon 24427327 24427474 380 - . gene_id "ERV316A3_5p14.2c"; transcript_id "ERV316A3_5p14.2c"; locus "ERV316A3_5p14.2c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0966"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "70"; repStart "-238"; chr5 rmsk exon 24427548 24428685 2989 - . gene_id "ERV316A3_5p14.2c"; transcript_id "ERV316A3_5p14.2c"; locus "ERV316A3_5p14.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0966"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "4042"; repStart "-44"; ### HML6_5p14.1 ### chr5 rmsk gene 24649664 24654720 . + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0023"; model_cov "4276"; model_pct "59.4"; chr5 rmsk exon 24649664 24649941 1803 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "294"; repFamily "ERVK"; repLeft "-190"; repStart "1"; chr5 rmsk exon 24649942 24650051 15124 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "550"; repFamily "ERVK"; repLeft "-6652"; repStart "432"; chr5 rmsk exon 24650361 24652644 15124 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "2869"; repFamily "ERVK"; repLeft "-4333"; repStart "551"; chr5 rmsk exon 24652632 24652820 1364 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "-2936"; repStart "4078"; chr5 rmsk exon 24652820 24653487 4338 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1885"; repStart "4644"; chr5 rmsk exon 24653483 24654460 7139 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "6223"; chr5 rmsk exon 24654461 24654720 1741 + . gene_id "HML6_5p14.1"; transcript_id "HML6_5p14.1"; locus "HML6_5p14.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0023"; repClass "LTR"; repEnd "284"; repFamily "ERVK"; repLeft "-200"; repStart "1"; ### HML1_5p14.1 ### chr5 rmsk gene 24747409 24751712 . - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0030"; model_cov "2309"; model_pct "37.9"; chr5 rmsk exon 24747409 24747990 3972 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "4"; repStart "0"; chr5 rmsk exon 24747995 24748115 804 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr5 rmsk exon 24748178 24748840 2001 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5011"; repStart "-199"; chr5 rmsk exon 24748840 24748960 967 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "4278"; repStart "-1698"; chr5 rmsk exon 24749947 24750395 3094 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "1705"; repStart "-3921"; chr5 rmsk exon 24750431 24751127 5426 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr5 rmsk exon 24751128 24751712 4173 - . gene_id "HML1_5p14.1"; transcript_id "HML1_5p14.1"; locus "HML1_5p14.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0030"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "4"; repStart "0"; ### ERVLB4_5p14.1a ### chr5 rmsk gene 24802991 24806045 . + . gene_id "ERVLB4_5p14.1a"; transcript_id "ERVLB4_5p14.1a"; locus "ERVLB4_5p14.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0593"; model_cov "2033"; model_pct "35.6"; chr5 rmsk exon 24802991 24803311 1564 + . gene_id "ERVLB4_5p14.1a"; transcript_id "ERVLB4_5p14.1a"; locus "ERVLB4_5p14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0593"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-232"; repStart "1"; chr5 rmsk exon 24803320 24805328 9611 + . gene_id "ERVLB4_5p14.1a"; transcript_id "ERVLB4_5p14.1a"; locus "ERVLB4_5p14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0593"; repClass "LTR"; repEnd "5546"; repFamily "ERVL"; repLeft "-168"; repStart "3598"; chr5 rmsk exon 24805411 24805492 502 + . gene_id "ERVLB4_5p14.1a"; transcript_id "ERVLB4_5p14.1a"; locus "ERVLB4_5p14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0593"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5629"; chr5 rmsk exon 24805493 24806045 2314 + . gene_id "ERVLB4_5p14.1a"; transcript_id "ERVLB4_5p14.1a"; locus "ERVLB4_5p14.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0593"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_5p14.1a ### chr5 rmsk gene 24890439 24892089 . + . gene_id "ERVLE_5p14.1a"; transcript_id "ERVLE_5p14.1a"; locus "ERVLE_5p14.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1309"; model_cov "1691"; model_pct "29.8"; chr5 rmsk exon 24890439 24892089 12049 + . gene_id "ERVLE_5p14.1a"; transcript_id "ERVLE_5p14.1a"; locus "ERVLE_5p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1309"; repClass "LTR"; repEnd "1931"; repFamily "ERVL"; repLeft "-3736"; repStart "240"; ### ERVLE_5p14.1b ### chr5 rmsk gene 24895047 24897965 . + . gene_id "ERVLE_5p14.1b"; transcript_id "ERVLE_5p14.1b"; locus "ERVLE_5p14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1310"; model_cov "2564"; model_pct "45.2"; chr5 rmsk exon 24895047 24896977 12049 + . gene_id "ERVLE_5p14.1b"; transcript_id "ERVLE_5p14.1b"; locus "ERVLE_5p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1310"; repClass "LTR"; repEnd "3868"; repFamily "ERVL"; repLeft "-1799"; repStart "1932"; chr5 rmsk exon 24896975 24897473 3112 + . gene_id "ERVLE_5p14.1b"; transcript_id "ERVLE_5p14.1b"; locus "ERVLE_5p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1310"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-1092"; repStart "4053"; chr5 rmsk exon 24897854 24897965 3112 + . gene_id "ERVLE_5p14.1b"; transcript_id "ERVLE_5p14.1b"; locus "ERVLE_5p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1310"; repClass "LTR"; repEnd "4682"; repFamily "ERVL"; repLeft "-985"; repStart "4576"; ### PRIMA4_5p14.1 ### chr5 rmsk gene 25010097 25019988 . - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0074"; model_cov "4972"; model_pct "60.1"; chr5 rmsk exon 25010097 25010614 2571 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "5879"; repStart "-1883"; chr5 rmsk exon 25010977 25011584 2571 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "5878"; repFamily "ERV1"; repLeft "5280"; repStart "-2392"; chr5 rmsk exon 25012343 25012628 1058 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "5483"; repFamily "ERV1"; repLeft "5210"; repStart "-2787"; chr5 rmsk exon 25013061 25013510 1058 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "5209"; repFamily "ERV1"; repLeft "4774"; repStart "-3061"; chr5 rmsk exon 25015195 25016482 2012 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "4772"; repFamily "ERV1"; repLeft "3449"; repStart "-3498"; chr5 rmsk exon 25017895 25018069 301 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "3093"; repStart "-5002"; chr5 rmsk exon 25018349 25019988 1048 - . gene_id "PRIMA4_5p14.1"; transcript_id "PRIMA4_5p14.1"; locus "PRIMA4_5p14.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0074"; repClass "LTR"; repEnd "3082"; repFamily "ERV1"; repLeft "1422"; repStart "-5188"; ### ERV316A3_5p14.1a ### chr5 rmsk gene 25025977 25027317 . - . gene_id "ERV316A3_5p14.1a"; transcript_id "ERV316A3_5p14.1a"; locus "ERV316A3_5p14.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0967"; model_cov "568"; model_pct "10.9"; chr5 rmsk exon 25025977 25026397 673 - . gene_id "ERV316A3_5p14.1a"; transcript_id "ERV316A3_5p14.1a"; locus "ERV316A3_5p14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0967"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "2955"; repStart "-1900"; chr5 rmsk exon 25027162 25027317 299 - . gene_id "ERV316A3_5p14.1a"; transcript_id "ERV316A3_5p14.1a"; locus "ERV316A3_5p14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0967"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "953"; repStart "-4076"; ### ERV316A3_5p14.1b ### chr5 rmsk gene 25094323 25097831 . - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0968"; model_cov "1930"; model_pct "36.9"; chr5 rmsk exon 25094323 25094614 445 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "1"; repStart "-136"; chr5 rmsk exon 25094678 25095209 1183 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "5170"; repFamily "ERVL"; repLeft "4625"; repStart "-56"; chr5 rmsk exon 25095584 25096026 862 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "4258"; repFamily "ERVL"; repLeft "3807"; repStart "-968"; chr5 rmsk exon 25096101 25096719 946 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "3647"; repFamily "ERVL"; repLeft "3004"; repStart "-1579"; chr5 rmsk exon 25097137 25097436 946 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "3003"; repFamily "ERVL"; repLeft "2712"; repStart "-2223"; chr5 rmsk exon 25097726 25097831 271 - . gene_id "ERV316A3_5p14.1b"; transcript_id "ERV316A3_5p14.1b"; locus "ERV316A3_5p14.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0968"; repClass "LTR"; repEnd "120"; repFamily "ERVL"; repLeft "12"; repStart "-336"; ### ERVLE_5p14.1c ### chr5 rmsk gene 25152578 25155900 . + . gene_id "ERVLE_5p14.1c"; transcript_id "ERVLE_5p14.1c"; locus "ERVLE_5p14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1312"; model_cov "2942"; model_pct "51.9"; chr5 rmsk exon 25152578 25154162 1653 + . gene_id "ERVLE_5p14.1c"; transcript_id "ERVLE_5p14.1c"; locus "ERVLE_5p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1312"; repClass "LTR"; repEnd "2968"; repFamily "ERVL"; repLeft "-2699"; repStart "1341"; chr5 rmsk exon 25154472 25154852 1653 + . gene_id "ERVLE_5p14.1c"; transcript_id "ERVLE_5p14.1c"; locus "ERVLE_5p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1312"; repClass "LTR"; repEnd "3344"; repFamily "ERVL"; repLeft "-2323"; repStart "2969"; chr5 rmsk exon 25154908 25155348 689 + . gene_id "ERVLE_5p14.1c"; transcript_id "ERVLE_5p14.1c"; locus "ERVLE_5p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1312"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "-1449"; repStart "3757"; chr5 rmsk exon 25155411 25155900 521 + . gene_id "ERVLE_5p14.1c"; transcript_id "ERVLE_5p14.1c"; locus "ERVLE_5p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1312"; repClass "LTR"; repEnd "4622"; repFamily "ERVL"; repLeft "-1045"; repStart "4143"; ### MER4_5p14.1a ### chr5 rmsk gene 25157105 25159694 . - . gene_id "MER4_5p14.1a"; transcript_id "MER4_5p14.1a"; locus "MER4_5p14.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0274"; model_cov "1531"; model_pct "23.2"; chr5 rmsk exon 25157105 25157456 2057 - . gene_id "MER4_5p14.1a"; transcript_id "MER4_5p14.1a"; locus "MER4_5p14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0274"; repClass "LTR"; repEnd "4752"; repFamily "ERV1"; repLeft "4392"; repStart "-1846"; chr5 rmsk exon 25158283 25158817 2604 - . gene_id "MER4_5p14.1a"; transcript_id "MER4_5p14.1a"; locus "MER4_5p14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0274"; repClass "LTR"; repEnd "4393"; repFamily "ERV1"; repLeft "3837"; repStart "-2205"; chr5 rmsk exon 25158785 25159078 1004 - . gene_id "MER4_5p14.1a"; transcript_id "MER4_5p14.1a"; locus "MER4_5p14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0274"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "3418"; repStart "-2919"; chr5 rmsk exon 25159094 25159694 1018 - . gene_id "MER4_5p14.1a"; transcript_id "MER4_5p14.1a"; locus "MER4_5p14.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0274"; repClass "LTR"; repEnd "2055"; repFamily "ERV1"; repLeft "1701"; repStart "-4543"; ### MER4B_5p14.1a ### chr5 rmsk gene 25159991 25161597 . - . gene_id "MER4B_5p14.1a"; transcript_id "MER4B_5p14.1a"; locus "MER4B_5p14.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0156"; model_cov "1569"; model_pct "23.2"; chr5 rmsk exon 25159991 25160638 3583 - . gene_id "MER4B_5p14.1a"; transcript_id "MER4B_5p14.1a"; locus "MER4B_5p14.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0156"; repClass "LTR"; repEnd "2612"; repFamily "ERV1"; repLeft "1924"; repStart "-4146"; chr5 rmsk exon 25160689 25160898 1266 - . gene_id "MER4B_5p14.1a"; transcript_id "MER4B_5p14.1a"; locus "MER4B_5p14.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0156"; repClass "LTR"; repEnd "1147"; repFamily "ERV1"; repLeft "924"; repStart "-5611"; chr5 rmsk exon 25160920 25161597 4319 - . gene_id "MER4B_5p14.1a"; transcript_id "MER4B_5p14.1a"; locus "MER4B_5p14.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0156"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "189"; repStart "-5911"; ### MER4_5p14.1b ### chr5 rmsk gene 25161615 25163795 . - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0275"; model_cov "937"; model_pct "14.2"; chr5 rmsk exon 25161615 25161819 817 - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0275"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2254"; repStart "-4170"; chr5 rmsk exon 25161992 25162074 306 - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0275"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-722"; repStart "-7241"; chr5 rmsk exon 25162062 25162542 2409 - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0275"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "76"; repStart "-5912"; chr5 rmsk exon 25163247 25163320 2409 - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0275"; repClass "LTR"; repEnd "75"; repFamily "ERV1"; repLeft "1"; repStart "-6523"; chr5 rmsk exon 25163324 25163795 3457 - . gene_id "MER4_5p14.1b"; transcript_id "MER4_5p14.1b"; locus "MER4_5p14.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0275"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_5p14.1d ### chr5 rmsk gene 25205944 25206576 . + . gene_id "ERVLE_5p14.1d"; transcript_id "ERVLE_5p14.1d"; locus "ERVLE_5p14.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1313"; model_cov "675"; model_pct "11.9"; chr5 rmsk exon 25205944 25206576 1422 + . gene_id "ERVLE_5p14.1d"; transcript_id "ERVLE_5p14.1d"; locus "ERVLE_5p14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1313"; repClass "LTR"; repEnd "1358"; repFamily "ERVL"; repLeft "-4309"; repStart "683"; ### ERV316A3_5p14.1c ### chr5 rmsk gene 25223289 25224739 . + . gene_id "ERV316A3_5p14.1c"; transcript_id "ERV316A3_5p14.1c"; locus "ERV316A3_5p14.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0969"; model_cov "1042"; model_pct "19.9"; chr5 rmsk exon 25223289 25223727 1100 + . gene_id "ERV316A3_5p14.1c"; transcript_id "ERV316A3_5p14.1c"; locus "ERV316A3_5p14.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0969"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 25223749 25224059 355 + . gene_id "ERV316A3_5p14.1c"; transcript_id "ERV316A3_5p14.1c"; locus "ERV316A3_5p14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0969"; repClass "LTR"; repEnd "324"; repFamily "ERVL"; repLeft "-4902"; repStart "27"; chr5 rmsk exon 25224040 25224739 1557 + . gene_id "ERV316A3_5p14.1c"; transcript_id "ERV316A3_5p14.1c"; locus "ERV316A3_5p14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0969"; repClass "LTR"; repEnd "1563"; repFamily "ERVL"; repLeft "-3663"; repStart "818"; ### ERVLB4_5p14.1b ### chr5 rmsk gene 25264597 25265272 . + . gene_id "ERVLB4_5p14.1b"; transcript_id "ERVLB4_5p14.1b"; locus "ERVLB4_5p14.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0595"; model_cov "678"; model_pct "11.9"; chr5 rmsk exon 25264597 25265272 3235 + . gene_id "ERVLB4_5p14.1b"; transcript_id "ERVLB4_5p14.1b"; locus "ERVLB4_5p14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0595"; repClass "LTR"; repEnd "1868"; repFamily "ERVL"; repLeft "-3846"; repStart "1190"; ### HERVL_5p14.1a ### chr5 rmsk gene 25401994 25403720 . + . gene_id "HERVL_5p14.1a"; transcript_id "HERVL_5p14.1a"; locus "HERVL_5p14.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0490"; model_cov "992"; model_pct "17.5"; chr5 rmsk exon 25401994 25402474 1287 + . gene_id "HERVL_5p14.1a"; transcript_id "HERVL_5p14.1a"; locus "HERVL_5p14.1a"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0490"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "-72"; repStart "187"; chr5 rmsk exon 25402733 25403720 5167 + . gene_id "HERVL_5p14.1a"; transcript_id "HERVL_5p14.1a"; locus "HERVL_5p14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0490"; repClass "LTR"; repEnd "1011"; repFamily "ERVL"; repLeft "-4643"; repStart "19"; ### ERVLE_5p14.1e ### chr5 rmsk gene 25471097 25472969 . + . gene_id "ERVLE_5p14.1e"; transcript_id "ERVLE_5p14.1e"; locus "ERVLE_5p14.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1315"; model_cov "1608"; model_pct "28.4"; chr5 rmsk exon 25471097 25471297 381 + . gene_id "ERVLE_5p14.1e"; transcript_id "ERVLE_5p14.1e"; locus "ERVLE_5p14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1315"; repClass "LTR"; repEnd "2347"; repFamily "ERVL"; repLeft "-3320"; repStart "2143"; chr5 rmsk exon 25471595 25472614 1048 + . gene_id "ERVLE_5p14.1e"; transcript_id "ERVLE_5p14.1e"; locus "ERVLE_5p14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1315"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "-1406"; repStart "3219"; chr5 rmsk exon 25472616 25472969 765 + . gene_id "ERVLE_5p14.1e"; transcript_id "ERVLE_5p14.1e"; locus "ERVLE_5p14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1315"; repClass "LTR"; repEnd "4462"; repFamily "ERVL"; repLeft "-1205"; repStart "4100"; ### PABLA_5p14.1 ### chr5 rmsk gene 25567694 25568982 . + . gene_id "PABLA_5p14.1"; transcript_id "PABLA_5p14.1"; locus "PABLA_5p14.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0043"; model_cov "2028"; model_pct "40.4"; chr5 rmsk exon 25567694 25567989 1936 + . gene_id "PABLA_5p14.1"; transcript_id "PABLA_5p14.1"; locus "PABLA_5p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0043"; repClass "LTR"; repEnd "-1447"; repFamily "ERV1"; repLeft "-6462"; repStart "-1742"; chr5 rmsk exon 25567990 25568982 2660 + . gene_id "PABLA_5p14.1"; transcript_id "PABLA_5p14.1"; locus "PABLA_5p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0043"; repClass "LTR"; repEnd "902"; repFamily "ERV1"; repLeft "-4113"; repStart "-831"; ### MER4B_5p14.1b ### chr5 rmsk gene 25569603 25576106 . + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0157"; model_cov "4218"; model_pct "62.4"; chr5 rmsk exon 25569603 25569694 1330 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-4996"; repStart "1671"; chr5 rmsk exon 25569941 25570127 1330 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "1964"; repFamily "ERV1"; repLeft "-4794"; repStart "1763"; chr5 rmsk exon 25570741 25571850 5157 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "-3663"; repStart "1961"; chr5 rmsk exon 25571851 25572520 3518 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3439"; chr5 rmsk exon 25572520 25574214 7508 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-439"; repStart "4452"; chr5 rmsk exon 25574233 25574506 1614 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "-113"; repStart "6369"; chr5 rmsk exon 25575356 25576106 5182 + . gene_id "MER4B_5p14.1b"; transcript_id "MER4B_5p14.1b"; locus "MER4B_5p14.1b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0157"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5p14.1f ### chr5 rmsk gene 25598654 25600138 . - . gene_id "ERVLE_5p14.1f"; transcript_id "ERVLE_5p14.1f"; locus "ERVLE_5p14.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1316"; model_cov "933"; model_pct "16.5"; chr5 rmsk exon 25598654 25598774 650 - . gene_id "ERVLE_5p14.1f"; transcript_id "ERVLE_5p14.1f"; locus "ERVLE_5p14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1316"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "1866"; repStart "-3692"; chr5 rmsk exon 25599103 25599688 650 - . gene_id "ERVLE_5p14.1f"; transcript_id "ERVLE_5p14.1f"; locus "ERVLE_5p14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1316"; repClass "LTR"; repEnd "1865"; repFamily "ERVL"; repLeft "1274"; repStart "-3802"; chr5 rmsk exon 25599910 25600138 612 - . gene_id "ERVLE_5p14.1f"; transcript_id "ERVLE_5p14.1f"; locus "ERVLE_5p14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1316"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "386"; repStart "-5048"; ### MER101_5p14.1a ### chr5 rmsk gene 25754459 25756691 . - . gene_id "MER101_5p14.1a"; transcript_id "MER101_5p14.1a"; locus "MER101_5p14.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0141"; model_cov "1137"; model_pct "17.1"; chr5 rmsk exon 25754459 25755073 1567 - . gene_id "MER101_5p14.1a"; transcript_id "MER101_5p14.1a"; locus "MER101_5p14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0141"; repClass "LTR"; repEnd "3511"; repFamily "ERV1"; repLeft "2826"; repStart "-3128"; chr5 rmsk exon 25755081 25755383 1423 - . gene_id "MER101_5p14.1a"; transcript_id "MER101_5p14.1a"; locus "MER101_5p14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0141"; repClass "LTR"; repEnd "562"; repFamily "ERV1"; repLeft "318"; repStart "-6077"; chr5 rmsk exon 25756067 25756136 1423 - . gene_id "MER101_5p14.1a"; transcript_id "MER101_5p14.1a"; locus "MER101_5p14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0141"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "248"; repStart "-6322"; chr5 rmsk exon 25756554 25756691 639 - . gene_id "MER101_5p14.1a"; transcript_id "MER101_5p14.1a"; locus "MER101_5p14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0141"; repClass "LTR"; repEnd "166"; repFamily "ERV1"; repLeft "27"; repStart "-6473"; ### LTR57_5p14.1 ### chr5 rmsk gene 25793696 25799696 . + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0068"; model_cov "4542"; model_pct "85.0"; chr5 rmsk exon 25793696 25793868 1913 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "172"; repFamily "ERVL"; repLeft "-239"; repStart "1"; chr5 rmsk exon 25793931 25794132 1913 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-31"; repStart "173"; chr5 rmsk exon 25794181 25795853 10262 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "-3706"; repStart "2"; chr5 rmsk exon 25795898 25796077 10262 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "1830"; repFamily "ERVL"; repLeft "-3513"; repStart "1638"; chr5 rmsk exon 25796064 25798311 10652 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "-353"; repStart "2626"; chr5 rmsk exon 25798959 25799301 2166 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "4992"; chr5 rmsk exon 25799304 25799696 2270 + . gene_id "LTR57_5p14.1"; transcript_id "LTR57_5p14.1"; locus "LTR57_5p14.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0068"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERVLE_5p14.1g ### chr5 rmsk gene 25820167 25821669 . + . gene_id "ERVLE_5p14.1g"; transcript_id "ERVLE_5p14.1g"; locus "ERVLE_5p14.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1318"; model_cov "1351"; model_pct "23.8"; chr5 rmsk exon 25820167 25820587 437 + . gene_id "ERVLE_5p14.1g"; transcript_id "ERVLE_5p14.1g"; locus "ERVLE_5p14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1318"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "-3547"; repStart "1683"; chr5 rmsk exon 25820742 25821221 822 + . gene_id "ERVLE_5p14.1g"; transcript_id "ERVLE_5p14.1g"; locus "ERVLE_5p14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1318"; repClass "LTR"; repEnd "2832"; repFamily "ERVL"; repLeft "-2835"; repStart "2344"; chr5 rmsk exon 25821272 25821669 421 + . gene_id "ERVLE_5p14.1g"; transcript_id "ERVLE_5p14.1g"; locus "ERVLE_5p14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1318"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1254"; repStart "3987"; ### MER101_5p14.1b ### chr5 rmsk gene 25853915 25855389 . + . gene_id "MER101_5p14.1b"; transcript_id "MER101_5p14.1b"; locus "MER101_5p14.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0142"; model_cov "1439"; model_pct "21.7"; chr5 rmsk exon 25853915 25855389 1702 + . gene_id "MER101_5p14.1b"; transcript_id "MER101_5p14.1b"; locus "MER101_5p14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0142"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2963"; repStart "2237"; ### MER101_5p14.1c ### chr5 rmsk gene 25855870 25858894 . + . gene_id "MER101_5p14.1c"; transcript_id "MER101_5p14.1c"; locus "MER101_5p14.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0143"; model_cov "1217"; model_pct "18.3"; chr5 rmsk exon 25855870 25856657 2826 + . gene_id "MER101_5p14.1c"; transcript_id "MER101_5p14.1c"; locus "MER101_5p14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0143"; repClass "LTR"; repEnd "3651"; repFamily "ERV1"; repLeft "-2988"; repStart "2856"; chr5 rmsk exon 25856684 25857128 817 + . gene_id "MER101_5p14.1c"; transcript_id "MER101_5p14.1c"; locus "MER101_5p14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0143"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "3631"; chr5 rmsk exon 25858757 25858894 930 + . gene_id "MER101_5p14.1c"; transcript_id "MER101_5p14.1c"; locus "MER101_5p14.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0143"; repClass "LTR"; repEnd "5875"; repFamily "ERV1"; repLeft "-764"; repStart "5738"; ### MER101_5p14.1d ### chr5 rmsk gene 25859219 25863182 . + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0144"; model_cov "1059"; model_pct "16.0"; chr5 rmsk exon 25859219 25859712 1865 + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0144"; repClass "LTR"; repEnd "5868"; repFamily "ERV1"; repLeft "-771"; repStart "5390"; chr5 rmsk exon 25859749 25859818 299 + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0144"; repClass "LTR"; repEnd "5940"; repFamily "ERV1"; repLeft "-699"; repStart "5878"; chr5 rmsk exon 25859917 25860228 1674 + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0144"; repClass "LTR"; repEnd "6431"; repFamily "ERV1"; repLeft "-208"; repStart "6113"; chr5 rmsk exon 25862544 25862743 1674 + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0144"; repClass "LTR"; repEnd "6637"; repFamily "ERV1"; repLeft "-2"; repStart "6436"; chr5 rmsk exon 25862745 25863182 1667 + . gene_id "MER101_5p14.1d"; transcript_id "MER101_5p14.1d"; locus "MER101_5p14.1d"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0144"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_5p14.1b ### chr5 rmsk gene 26103881 26107744 . - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0492"; model_cov "2754"; model_pct "48.7"; chr5 rmsk exon 26103881 26104301 2643 - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0492"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr5 rmsk exon 26104302 26105208 5886 - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0492"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4765"; repStart "0"; chr5 rmsk exon 26105210 26106336 8366 - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0492"; repClass "LTR"; repEnd "3369"; repFamily "ERVL"; repLeft "2227"; repStart "-2285"; chr5 rmsk exon 26106333 26107056 5441 - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0492"; repClass "LTR"; repEnd "725"; repFamily "ERVL"; repLeft "2"; repStart "-4929"; chr5 rmsk exon 26107355 26107744 2470 - . gene_id "HERVL_5p14.1b"; transcript_id "HERVL_5p14.1b"; locus "HERVL_5p14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0492"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "2"; repStart "-41"; ### HERVL_5p14.1c ### chr5 rmsk gene 26398325 26405152 . - . gene_id "HERVL_5p14.1c"; transcript_id "HERVL_5p14.1c"; locus "HERVL_5p14.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0493"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 26398325 26398376 289 - . gene_id "HERVL_5p14.1c"; transcript_id "HERVL_5p14.1c"; locus "HERVL_5p14.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0493"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "399"; repStart "0"; chr5 rmsk exon 26398648 26399074 2786 - . gene_id "HERVL_5p14.1c"; transcript_id "HERVL_5p14.1c"; locus "HERVL_5p14.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0493"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-101"; repStart "-44"; chr5 rmsk exon 26399075 26404708 41580 - . gene_id "HERVL_5p14.1c"; transcript_id "HERVL_5p14.1c"; locus "HERVL_5p14.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0493"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 26404711 26405152 2991 - . gene_id "HERVL_5p14.1c"; transcript_id "HERVL_5p14.1c"; locus "HERVL_5p14.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0493"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLE_5p14.1h ### chr5 rmsk gene 26423333 26428119 . - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1320"; model_cov "2968"; model_pct "52.4"; chr5 rmsk exon 26423333 26423842 616 - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1320"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "4565"; repStart "-578"; chr5 rmsk exon 26424077 26425039 4202 - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1320"; repClass "LTR"; repEnd "4232"; repFamily "ERVL"; repLeft "3282"; repStart "-1435"; chr5 rmsk exon 26425878 26425950 4202 - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1320"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "3220"; repStart "-2386"; chr5 rmsk exon 26426628 26427889 4202 - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1320"; repClass "LTR"; repEnd "3219"; repFamily "ERVL"; repLeft "1949"; repStart "-2448"; chr5 rmsk exon 26427956 26428119 375 - . gene_id "ERVLE_5p14.1h"; transcript_id "ERVLE_5p14.1h"; locus "ERVLE_5p14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1320"; repClass "LTR"; repEnd "1826"; repFamily "ERVL"; repLeft "1663"; repStart "-3841"; ### HERVL74_5p14.1 ### chr5 rmsk gene 26430056 26431437 . + . gene_id "HERVL74_5p14.1"; transcript_id "HERVL74_5p14.1"; locus "HERVL74_5p14.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0029"; model_cov "927"; model_pct "16.3"; chr5 rmsk exon 26430056 26430525 1795 + . gene_id "HERVL74_5p14.1"; transcript_id "HERVL74_5p14.1"; locus "HERVL74_5p14.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0029"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-12"; repStart "4"; chr5 rmsk exon 26430543 26431437 1494 + . gene_id "HERVL74_5p14.1"; transcript_id "HERVL74_5p14.1"; locus "HERVL74_5p14.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0029"; repClass "LTR"; repEnd "930"; repFamily "ERVL"; repLeft "-4755"; repStart "3"; ### MER41_5p14.1 ### chr5 rmsk gene 26488052 26489966 . + . gene_id "MER41_5p14.1"; transcript_id "MER41_5p14.1"; locus "MER41_5p14.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0171"; model_cov "1945"; model_pct "32.7"; chr5 rmsk exon 26488052 26488548 1391 + . gene_id "MER41_5p14.1"; transcript_id "MER41_5p14.1"; locus "MER41_5p14.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0171"; repClass "LTR"; repEnd "-271"; repFamily "ERV1"; repLeft "-6217"; repStart "-971"; chr5 rmsk exon 26488647 26489966 6306 + . gene_id "MER41_5p14.1"; transcript_id "MER41_5p14.1"; locus "MER41_5p14.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0171"; repClass "LTR"; repEnd "2108"; repFamily "ERV1"; repLeft "-3838"; repStart "863"; ### ERVLE_5p14.1i ### chr5 rmsk gene 26543974 26546393 . + . gene_id "ERVLE_5p14.1i"; transcript_id "ERVLE_5p14.1i"; locus "ERVLE_5p14.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1321"; model_cov "1237"; model_pct "21.8"; chr5 rmsk exon 26543974 26544134 387 + . gene_id "ERVLE_5p14.1i"; transcript_id "ERVLE_5p14.1i"; locus "ERVLE_5p14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1321"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "-5552"; repStart "-46"; chr5 rmsk exon 26544422 26544913 1146 + . gene_id "ERVLE_5p14.1i"; transcript_id "ERVLE_5p14.1i"; locus "ERVLE_5p14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1321"; repClass "LTR"; repEnd "762"; repFamily "ERVL"; repLeft "-4905"; repStart "250"; chr5 rmsk exon 26545750 26545999 602 + . gene_id "ERVLE_5p14.1i"; transcript_id "ERVLE_5p14.1i"; locus "ERVLE_5p14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1321"; repClass "LTR"; repEnd "1014"; repFamily "ERVL"; repLeft "-4653"; repStart "759"; chr5 rmsk exon 26546096 26546393 627 + . gene_id "ERVLE_5p14.1i"; transcript_id "ERVLE_5p14.1i"; locus "ERVLE_5p14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1321"; repClass "LTR"; repEnd "5658"; repFamily "ERVL"; repLeft "-9"; repStart "5349"; ### HERVL_5p14.1d ### chr5 rmsk gene 26560812 26564097 . + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0495"; model_cov "2531"; model_pct "44.8"; chr5 rmsk exon 26560812 26561021 1385 + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0495"; repClass "LTR"; repEnd "219"; repFamily "ERVL"; repLeft "-225"; repStart "1"; chr5 rmsk exon 26561122 26561552 4960 + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0495"; repClass "LTR"; repEnd "2285"; repFamily "ERVL"; repLeft "-3369"; repStart "1806"; chr5 rmsk exon 26561672 26562211 4960 + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0495"; repClass "LTR"; repEnd "2888"; repFamily "ERVL"; repLeft "-2766"; repStart "2286"; chr5 rmsk exon 26562196 26563646 10604 + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0495"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4204"; chr5 rmsk exon 26563647 26564097 2769 + . gene_id "HERVL_5p14.1d"; transcript_id "HERVL_5p14.1d"; locus "HERVL_5p14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0495"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER34B_5p14.1 ### chr5 rmsk gene 26643998 26644675 . + . gene_id "MER34B_5p14.1"; transcript_id "MER34B_5p14.1"; locus "MER34B_5p14.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0105"; model_cov "872"; model_pct "16.3"; chr5 rmsk exon 26643998 26644675 800 + . gene_id "MER34B_5p14.1"; transcript_id "MER34B_5p14.1"; locus "MER34B_5p14.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0105"; repClass "LTR"; repEnd "2453"; repFamily "ERV1"; repLeft "-2903"; repStart "1581"; ### ERVLE_5p14.1j ### chr5 rmsk gene 26679552 26682260 . + . gene_id "ERVLE_5p14.1j"; transcript_id "ERVLE_5p14.1j"; locus "ERVLE_5p14.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1322"; model_cov "1277"; model_pct "22.5"; chr5 rmsk exon 26679552 26679876 485 + . gene_id "ERVLE_5p14.1j"; transcript_id "ERVLE_5p14.1j"; locus "ERVLE_5p14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1322"; repClass "LTR"; repEnd "2133"; repFamily "ERVL"; repLeft "-3534"; repStart "1789"; chr5 rmsk exon 26681328 26681786 636 + . gene_id "ERVLE_5p14.1j"; transcript_id "ERVLE_5p14.1j"; locus "ERVLE_5p14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1322"; repClass "LTR"; repEnd "2762"; repFamily "ERVL"; repLeft "-2905"; repStart "2190"; chr5 rmsk exon 26681912 26682260 416 + . gene_id "ERVLE_5p14.1j"; transcript_id "ERVLE_5p14.1j"; locus "ERVLE_5p14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1322"; repClass "LTR"; repEnd "3291"; repFamily "ERVL"; repLeft "-2376"; repStart "2930"; ### HERVL_5p14.1e ### chr5 rmsk gene 26768814 26775626 . + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0496"; model_cov "5652"; model_pct "100.0"; chr5 rmsk exon 26768814 26769217 2583 + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0496"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "4"; chr5 rmsk exon 26769218 26774179 40686 + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0496"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "-675"; repStart "1"; chr5 rmsk exon 26774457 26775132 40686 + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0496"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4980"; chr5 rmsk exon 26775134 26775522 3021 + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0496"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "2"; chr5 rmsk exon 26775589 26775626 3021 + . gene_id "HERVL_5p14.1e"; transcript_id "HERVL_5p14.1e"; locus "HERVL_5p14.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0496"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### ERVLE_5p14.1k ### chr5 rmsk gene 27058270 27060143 . + . gene_id "ERVLE_5p14.1k"; transcript_id "ERVLE_5p14.1k"; locus "ERVLE_5p14.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1323"; model_cov "1913"; model_pct "33.8"; chr5 rmsk exon 27058270 27058617 860 + . gene_id "ERVLE_5p14.1k"; transcript_id "ERVLE_5p14.1k"; locus "ERVLE_5p14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1323"; repClass "LTR"; repEnd "3041"; repFamily "ERVL"; repLeft "-2626"; repStart "2677"; chr5 rmsk exon 27058618 27060143 2765 + . gene_id "ERVLE_5p14.1k"; transcript_id "ERVLE_5p14.1k"; locus "ERVLE_5p14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1323"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "-4"; repStart "4114"; ### ERV316A3_5p14.1d ### chr5 rmsk gene 27062218 27064330 . + . gene_id "ERV316A3_5p14.1d"; transcript_id "ERV316A3_5p14.1d"; locus "ERV316A3_5p14.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0973"; model_cov "1461"; model_pct "28.0"; chr5 rmsk exon 27062218 27062684 831 + . gene_id "ERV316A3_5p14.1d"; transcript_id "ERV316A3_5p14.1d"; locus "ERV316A3_5p14.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0973"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 27062691 27063333 1265 + . gene_id "ERV316A3_5p14.1d"; transcript_id "ERV316A3_5p14.1d"; locus "ERV316A3_5p14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0973"; repClass "LTR"; repEnd "651"; repFamily "ERVL"; repLeft "-4575"; repStart "9"; chr5 rmsk exon 27063638 27063953 1265 + . gene_id "ERV316A3_5p14.1d"; transcript_id "ERV316A3_5p14.1d"; locus "ERV316A3_5p14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0973"; repClass "LTR"; repEnd "977"; repFamily "ERVL"; repLeft "-4249"; repStart "652"; chr5 rmsk exon 27063959 27064330 945 + . gene_id "ERV316A3_5p14.1d"; transcript_id "ERV316A3_5p14.1d"; locus "ERV316A3_5p14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0973"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "-746"; repStart "3986"; ### MER101_5p14.1e ### chr5 rmsk gene 27153791 27155981 . + . gene_id "MER101_5p14.1e"; transcript_id "MER101_5p14.1e"; locus "MER101_5p14.1e"; category "internal"; intModel "MER101-int"; locid "MER101-int_0145"; model_cov "1315"; model_pct "19.8"; chr5 rmsk exon 27153791 27154510 1387 + . gene_id "MER101_5p14.1e"; transcript_id "MER101_5p14.1e"; locus "MER101_5p14.1e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0145"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-3997"; repStart "1553"; chr5 rmsk exon 27154708 27154834 373 + . gene_id "MER101_5p14.1e"; transcript_id "MER101_5p14.1e"; locus "MER101_5p14.1e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0145"; repClass "LTR"; repEnd "2901"; repFamily "ERV1"; repLeft "-3738"; repStart "2759"; chr5 rmsk exon 27155896 27155981 298 + . gene_id "MER101_5p14.1e"; transcript_id "MER101_5p14.1e"; locus "MER101_5p14.1e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0145"; repClass "LTR"; repEnd "2968"; repFamily "ERV1"; repLeft "-3671"; repStart "2884"; ### ERVLB4_5p14.1c ### chr5 rmsk gene 27274559 27275782 . - . gene_id "ERVLB4_5p14.1c"; transcript_id "ERVLB4_5p14.1c"; locus "ERVLB4_5p14.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0596"; model_cov "918"; model_pct "16.1"; chr5 rmsk exon 27274559 27274931 430 - . gene_id "ERVLB4_5p14.1c"; transcript_id "ERVLB4_5p14.1c"; locus "ERVLB4_5p14.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0596"; repClass "LTR"; repEnd "3170"; repFamily "ERVL"; repLeft "2791"; repStart "-2544"; chr5 rmsk exon 27275220 27275782 837 - . gene_id "ERVLB4_5p14.1c"; transcript_id "ERVLB4_5p14.1c"; locus "ERVLB4_5p14.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0596"; repClass "LTR"; repEnd "2673"; repFamily "ERVL"; repLeft "2134"; repStart "-3041"; ### ERVLE_5p14.1l ### chr5 rmsk gene 27307485 27308052 . + . gene_id "ERVLE_5p14.1l"; transcript_id "ERVLE_5p14.1l"; locus "ERVLE_5p14.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1325"; model_cov "603"; model_pct "10.6"; chr5 rmsk exon 27307485 27308052 2000 + . gene_id "ERVLE_5p14.1l"; transcript_id "ERVLE_5p14.1l"; locus "ERVLE_5p14.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1325"; repClass "LTR"; repEnd "1165"; repFamily "ERVL"; repLeft "-4502"; repStart "562"; ### ERVLB4_5p14.1d ### chr5 rmsk gene 27308045 27311243 . + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0597"; model_cov "1635"; model_pct "28.6"; chr5 rmsk exon 27308045 27308196 475 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "3309"; repFamily "ERVL"; repLeft "-2405"; repStart "3160"; chr5 rmsk exon 27308229 27308499 838 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "3601"; repFamily "ERVL"; repLeft "-2113"; repStart "3319"; chr5 rmsk exon 27309779 27310206 434 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "4906"; repFamily "ERVL"; repLeft "-808"; repStart "4376"; chr5 rmsk exon 27310209 27310400 479 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "-598"; repStart "4916"; chr5 rmsk exon 27310394 27310556 844 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "5412"; repFamily "ERVL"; repLeft "-302"; repStart "5233"; chr5 rmsk exon 27310604 27310883 844 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "-6"; repStart "5413"; chr5 rmsk exon 27310885 27311243 765 + . gene_id "ERVLB4_5p14.1d"; transcript_id "ERVLB4_5p14.1d"; locus "ERVLB4_5p14.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0597"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-244"; repStart "46"; ### ERVLB4_5p14.1e ### chr5 rmsk gene 27418462 27419087 . - . gene_id "ERVLB4_5p14.1e"; transcript_id "ERVLB4_5p14.1e"; locus "ERVLB4_5p14.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0598"; model_cov "614"; model_pct "10.7"; chr5 rmsk exon 27418462 27418993 564 - . gene_id "ERVLB4_5p14.1e"; transcript_id "ERVLB4_5p14.1e"; locus "ERVLB4_5p14.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0598"; repClass "LTR"; repEnd "5063"; repFamily "ERVL"; repLeft "4533"; repStart "-651"; chr5 rmsk exon 27419005 27419087 289 - . gene_id "ERVLB4_5p14.1e"; transcript_id "ERVLB4_5p14.1e"; locus "ERVLB4_5p14.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0598"; repClass "LTR"; repEnd "4423"; repFamily "ERVL"; repLeft "4339"; repStart "-1291"; ### MER61_5p14.1 ### chr5 rmsk gene 27472074 27477973 . + . gene_id "MER61_5p14.1"; transcript_id "MER61_5p14.1"; locus "MER61_5p14.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0150"; model_cov "5083"; model_pct "97.4"; chr5 rmsk exon 27472074 27472487 2201 + . gene_id "MER61_5p14.1"; transcript_id "MER61_5p14.1"; locus "MER61_5p14.1"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0150"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "14"; chr5 rmsk exon 27472488 27472711 747 + . gene_id "MER61_5p14.1"; transcript_id "MER61_5p14.1"; locus "MER61_5p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0150"; repClass "LTR"; repEnd "215"; repFamily "ERV1"; repLeft "-5002"; repStart "2"; chr5 rmsk exon 27472715 27477542 26855 + . gene_id "MER61_5p14.1"; transcript_id "MER61_5p14.1"; locus "MER61_5p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0150"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "-4"; repStart "343"; chr5 rmsk exon 27477543 27477973 2295 + . gene_id "MER61_5p14.1"; transcript_id "MER61_5p14.1"; locus "MER61_5p14.1"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0150"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "6"; ### ERV316A3_5p14.1e ### chr5 rmsk gene 27491286 27492043 . - . gene_id "ERV316A3_5p14.1e"; transcript_id "ERV316A3_5p14.1e"; locus "ERV316A3_5p14.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0974"; model_cov "679"; model_pct "13.0"; chr5 rmsk exon 27491286 27492043 828 - . gene_id "ERV316A3_5p14.1e"; transcript_id "ERV316A3_5p14.1e"; locus "ERV316A3_5p14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0974"; repClass "LTR"; repEnd "2186"; repFamily "ERVL"; repLeft "1507"; repStart "-3040"; ### HERVL_5p14.1f ### chr5 rmsk gene 27514122 27520676 . - . gene_id "HERVL_5p14.1f"; transcript_id "HERVL_5p14.1f"; locus "HERVL_5p14.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0497"; model_cov "5650"; model_pct "99.9"; chr5 rmsk exon 27514122 27514541 2838 - . gene_id "HERVL_5p14.1f"; transcript_id "HERVL_5p14.1f"; locus "HERVL_5p14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0497"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-110"; repStart "-41"; chr5 rmsk exon 27514542 27520169 42147 - . gene_id "HERVL_5p14.1f"; transcript_id "HERVL_5p14.1f"; locus "HERVL_5p14.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0497"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr5 rmsk exon 27520173 27520212 2807 - . gene_id "HERVL_5p14.1f"; transcript_id "HERVL_5p14.1f"; locus "HERVL_5p14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0497"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr5 rmsk exon 27520267 27520676 2807 - . gene_id "HERVL_5p14.1f"; transcript_id "HERVL_5p14.1f"; locus "HERVL_5p14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0497"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVLE_5p14.1m ### chr5 rmsk gene 27579629 27581261 . - . gene_id "ERVLE_5p14.1m"; transcript_id "ERVLE_5p14.1m"; locus "ERVLE_5p14.1m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1326"; model_cov "1272"; model_pct "22.4"; chr5 rmsk exon 27579629 27580170 1410 - . gene_id "ERVLE_5p14.1m"; transcript_id "ERVLE_5p14.1m"; locus "ERVLE_5p14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1326"; repClass "LTR"; repEnd "5573"; repFamily "ERVL"; repLeft "5007"; repStart "-94"; chr5 rmsk exon 27580546 27580860 1060 - . gene_id "ERVLE_5p14.1m"; transcript_id "ERVLE_5p14.1m"; locus "ERVLE_5p14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1326"; repClass "LTR"; repEnd "4727"; repFamily "ERVL"; repLeft "4400"; repStart "-940"; chr5 rmsk exon 27580880 27581261 1082 - . gene_id "ERVLE_5p14.1m"; transcript_id "ERVLE_5p14.1m"; locus "ERVLE_5p14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1326"; repClass "LTR"; repEnd "4326"; repFamily "ERVL"; repLeft "3947"; repStart "-1341"; ### HERVL_5p14.1g ### chr5 rmsk gene 27630581 27636850 . - . gene_id "HERVL_5p14.1g"; transcript_id "HERVL_5p14.1g"; locus "HERVL_5p14.1g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0498"; model_cov "5586"; model_pct "98.8"; chr5 rmsk exon 27630581 27636118 40798 - . gene_id "HERVL_5p14.1g"; transcript_id "HERVL_5p14.1g"; locus "HERVL_5p14.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0498"; repClass "LTR"; repEnd "5588"; repFamily "ERVL"; repLeft "2"; repStart "-66"; chr5 rmsk exon 27636121 27636174 359 - . gene_id "HERVL_5p14.1g"; transcript_id "HERVL_5p14.1g"; locus "HERVL_5p14.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0498"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "389"; repStart "-1"; chr5 rmsk exon 27636462 27636850 2880 - . gene_id "HERVL_5p14.1g"; transcript_id "HERVL_5p14.1g"; locus "HERVL_5p14.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0498"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "1"; repStart "-54"; ### MER4_5p14.1c ### chr5 rmsk gene 27858711 27860856 . - . gene_id "MER4_5p14.1c"; transcript_id "MER4_5p14.1c"; locus "MER4_5p14.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0276"; model_cov "1424"; model_pct "21.6"; chr5 rmsk exon 27858711 27859181 3104 - . gene_id "MER4_5p14.1c"; transcript_id "MER4_5p14.1c"; locus "MER4_5p14.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0276"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 27859183 27859916 7981 - . gene_id "MER4_5p14.1c"; transcript_id "MER4_5p14.1c"; locus "MER4_5p14.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0276"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5841"; repStart "0"; chr5 rmsk exon 27860236 27860856 7981 - . gene_id "MER4_5p14.1c"; transcript_id "MER4_5p14.1c"; locus "MER4_5p14.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0276"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "5173"; repStart "-758"; ### HERVL_5p14.1h ### chr5 rmsk gene 27897474 27904021 . + . gene_id "HERVL_5p14.1h"; transcript_id "HERVL_5p14.1h"; locus "HERVL_5p14.1h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0499"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 27897474 27897990 2689 + . gene_id "HERVL_5p14.1h"; transcript_id "HERVL_5p14.1h"; locus "HERVL_5p14.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0499"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-70"; chr5 rmsk exon 27897991 27903597 41539 + . gene_id "HERVL_5p14.1h"; transcript_id "HERVL_5p14.1h"; locus "HERVL_5p14.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0499"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 27903598 27904021 3199 + . gene_id "HERVL_5p14.1h"; transcript_id "HERVL_5p14.1h"; locus "HERVL_5p14.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0499"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_5p14.1n ### chr5 rmsk gene 28008057 28009387 . - . gene_id "ERVLE_5p14.1n"; transcript_id "ERVLE_5p14.1n"; locus "ERVLE_5p14.1n"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1327"; model_cov "960"; model_pct "16.9"; chr5 rmsk exon 28008057 28008451 418 - . gene_id "ERVLE_5p14.1n"; transcript_id "ERVLE_5p14.1n"; locus "ERVLE_5p14.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1327"; repClass "LTR"; repEnd "5305"; repFamily "ERVL"; repLeft "4893"; repStart "-362"; chr5 rmsk exon 28008851 28009387 901 - . gene_id "ERVLE_5p14.1n"; transcript_id "ERVLE_5p14.1n"; locus "ERVLE_5p14.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1327"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "3888"; repStart "-1231"; ### HUERSP3B_5p14.1a ### chr5 rmsk gene 28011639 28013516 . + . gene_id "HUERSP3B_5p14.1a"; transcript_id "HUERSP3B_5p14.1a"; locus "HUERSP3B_5p14.1a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0050"; model_cov "1211"; model_pct "16.3"; chr5 rmsk exon 28011639 28012278 3875 + . gene_id "HUERSP3B_5p14.1a"; transcript_id "HUERSP3B_5p14.1a"; locus "HUERSP3B_5p14.1a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0050"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 28012313 28012380 318 + . gene_id "HUERSP3B_5p14.1a"; transcript_id "HUERSP3B_5p14.1a"; locus "HUERSP3B_5p14.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0050"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "25"; chr5 rmsk exon 28012374 28012667 1301 + . gene_id "HUERSP3B_5p14.1a"; transcript_id "HUERSP3B_5p14.1a"; locus "HUERSP3B_5p14.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0050"; repClass "LTR"; repEnd "534"; repFamily "ERV1"; repLeft "-6884"; repStart "244"; chr5 rmsk exon 28012686 28013516 5861 + . gene_id "HUERSP3B_5p14.1a"; transcript_id "HUERSP3B_5p14.1a"; locus "HUERSP3B_5p14.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0050"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "-5819"; repStart "749"; ### HUERSP3B_5p14.1b ### chr5 rmsk gene 28013557 28015406 . + . gene_id "HUERSP3B_5p14.1b"; transcript_id "HUERSP3B_5p14.1b"; locus "HUERSP3B_5p14.1b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0051"; model_cov "1395"; model_pct "18.8"; chr5 rmsk exon 28013557 28014607 5861 + . gene_id "HUERSP3B_5p14.1b"; transcript_id "HUERSP3B_5p14.1b"; locus "HUERSP3B_5p14.1b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0051"; repClass "LTR"; repEnd "1494"; repFamily "ERV1"; repLeft "-5924"; repStart "99"; chr5 rmsk exon 28015011 28015406 2279 + . gene_id "HUERSP3B_5p14.1b"; transcript_id "HUERSP3B_5p14.1b"; locus "HUERSP3B_5p14.1b"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0051"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "250"; ### HERVH_5p14.1 ### chr5 rmsk gene 28047131 28052299 . + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0473"; model_cov "4950"; model_pct "64.2"; chr5 rmsk exon 28047131 28049060 11253 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1125"; chr5 rmsk exon 28049040 28050905 6637 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "6365"; repFamily "ERV1"; repLeft "-1348"; repStart "4199"; chr5 rmsk exon 28050902 28050988 572 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "-2803"; repStart "4824"; chr5 rmsk exon 28050989 28051250 1401 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr5 rmsk exon 28051244 28051287 331 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "7200"; repFamily "ERV1"; repLeft "-513"; repStart "7157"; chr5 rmsk exon 28051320 28051836 3257 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7196"; chr5 rmsk exon 28051838 28052299 3601 + . gene_id "HERVH_5p14.1"; transcript_id "HERVH_5p14.1"; locus "HERVH_5p14.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0473"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_5p14.1i ### chr5 rmsk gene 28122396 28124716 . - . gene_id "HERVL_5p14.1i"; transcript_id "HERVL_5p14.1i"; locus "HERVL_5p14.1i"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0500"; model_cov "1704"; model_pct "30.1"; chr5 rmsk exon 28122396 28122449 362 - . gene_id "HERVL_5p14.1i"; transcript_id "HERVL_5p14.1i"; locus "HERVL_5p14.1i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0500"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr5 rmsk exon 28122598 28122983 2652 - . gene_id "HERVL_5p14.1i"; transcript_id "HERVL_5p14.1i"; locus "HERVL_5p14.1i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0500"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "-47"; chr5 rmsk exon 28122984 28124716 12561 - . gene_id "HERVL_5p14.1i"; transcript_id "HERVL_5p14.1i"; locus "HERVL_5p14.1i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0500"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3950"; repStart "0"; ### ERVLB4_5p14.1f ### chr5 rmsk gene 28169887 28173178 . - . gene_id "ERVLB4_5p14.1f"; transcript_id "ERVLB4_5p14.1f"; locus "ERVLB4_5p14.1f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0600"; model_cov "935"; model_pct "16.4"; chr5 rmsk exon 28169887 28170129 1035 - . gene_id "ERVLB4_5p14.1f"; transcript_id "ERVLB4_5p14.1f"; locus "ERVLB4_5p14.1f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0600"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "298"; repStart "0"; chr5 rmsk exon 28170392 28171195 4245 - . gene_id "ERVLB4_5p14.1f"; transcript_id "ERVLB4_5p14.1f"; locus "ERVLB4_5p14.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0600"; repClass "LTR"; repEnd "945"; repFamily "ERVL"; repLeft "118"; repStart "-4769"; chr5 rmsk exon 28172157 28172265 611 - . gene_id "ERVLB4_5p14.1f"; transcript_id "ERVLB4_5p14.1f"; locus "ERVLB4_5p14.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0600"; repClass "LTR"; repEnd "120"; repFamily "ERVL"; repLeft "12"; repStart "-5594"; chr5 rmsk exon 28172666 28173178 2150 - . gene_id "ERVLB4_5p14.1f"; transcript_id "ERVLB4_5p14.1f"; locus "ERVLB4_5p14.1f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0600"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-38"; repStart "-41"; ### ERVLB4_5p14.1g ### chr5 rmsk gene 28248853 28249763 . + . gene_id "ERVLB4_5p14.1g"; transcript_id "ERVLB4_5p14.1g"; locus "ERVLB4_5p14.1g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0601"; model_cov "720"; model_pct "12.6"; chr5 rmsk exon 28248853 28249371 525 + . gene_id "ERVLB4_5p14.1g"; transcript_id "ERVLB4_5p14.1g"; locus "ERVLB4_5p14.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0601"; repClass "LTR"; repEnd "2320"; repFamily "ERVL"; repLeft "-3394"; repStart "1741"; chr5 rmsk exon 28249626 28249763 302 + . gene_id "ERVLB4_5p14.1g"; transcript_id "ERVLB4_5p14.1g"; locus "ERVLB4_5p14.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0601"; repClass "LTR"; repEnd "3551"; repFamily "ERVL"; repLeft "-2163"; repStart "3410"; ### ERVLE_5p14.1o ### chr5 rmsk gene 28287750 28288628 . + . gene_id "ERVLE_5p14.1o"; transcript_id "ERVLE_5p14.1o"; locus "ERVLE_5p14.1o"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1328"; model_cov "787"; model_pct "13.9"; chr5 rmsk exon 28287750 28288309 1181 + . gene_id "ERVLE_5p14.1o"; transcript_id "ERVLE_5p14.1o"; locus "ERVLE_5p14.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1328"; repClass "LTR"; repEnd "3152"; repFamily "ERVL"; repLeft "-2515"; repStart "2564"; chr5 rmsk exon 28288426 28288628 343 + . gene_id "ERVLE_5p14.1o"; transcript_id "ERVLE_5p14.1o"; locus "ERVLE_5p14.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1328"; repClass "LTR"; repEnd "4158"; repFamily "ERVL"; repLeft "-1509"; repStart "3959"; ### ERVLE_5p14.1p ### chr5 rmsk gene 28316106 28319929 . - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1329"; model_cov "2759"; model_pct "48.7"; chr5 rmsk exon 28316106 28317075 3230 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "2368"; repStart "-2327"; chr5 rmsk exon 28317682 28318551 2471 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "1416"; repStart "-3334"; chr5 rmsk exon 28318576 28319061 1092 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "1350"; repFamily "ERVL"; repLeft "856"; repStart "-4317"; chr5 rmsk exon 28319334 28319434 335 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "814"; repFamily "ERVL"; repLeft "714"; repStart "-4853"; chr5 rmsk exon 28319460 28319603 373 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "542"; repFamily "ERVL"; repLeft "397"; repStart "-5125"; chr5 rmsk exon 28319634 28319762 277 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "281"; repStart "-5255"; chr5 rmsk exon 28319781 28319929 423 - . gene_id "ERVLE_5p14.1p"; transcript_id "ERVLE_5p14.1p"; locus "ERVLE_5p14.1p"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1329"; repClass "LTR"; repEnd "150"; repFamily "ERVL"; repLeft "1"; repStart "-513"; ### MER101_5p14.1f ### chr5 rmsk gene 28419636 28421396 . - . gene_id "MER101_5p14.1f"; transcript_id "MER101_5p14.1f"; locus "MER101_5p14.1f"; category "internal"; intModel "MER101-int"; locid "MER101-int_0146"; model_cov "1979"; model_pct "29.8"; chr5 rmsk exon 28419636 28421396 3397 - . gene_id "MER101_5p14.1f"; transcript_id "MER101_5p14.1f"; locus "MER101_5p14.1f"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0146"; repClass "LTR"; repEnd "4617"; repFamily "ERV1"; repLeft "2638"; repStart "-2022"; ### HERVL_5p14.1j ### chr5 rmsk gene 28445761 28450926 . + . gene_id "HERVL_5p14.1j"; transcript_id "HERVL_5p14.1j"; locus "HERVL_5p14.1j"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0502"; model_cov "4762"; model_pct "84.2"; chr5 rmsk exon 28445761 28449821 34153 + . gene_id "HERVL_5p14.1j"; transcript_id "HERVL_5p14.1j"; locus "HERVL_5p14.1j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0502"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-632"; repStart "891"; chr5 rmsk exon 28449858 28450476 34153 + . gene_id "HERVL_5p14.1j"; transcript_id "HERVL_5p14.1j"; locus "HERVL_5p14.1j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0502"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5023"; chr5 rmsk exon 28450477 28450926 3150 + . gene_id "HERVL_5p14.1j"; transcript_id "HERVL_5p14.1j"; locus "HERVL_5p14.1j"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0502"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_5p14.1k ### chr5 rmsk gene 28504955 28510804 . - . gene_id "HERVL_5p14.1k"; transcript_id "HERVL_5p14.1k"; locus "HERVL_5p14.1k"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0504"; model_cov "5420"; model_pct "95.9"; chr5 rmsk exon 28504955 28505157 39047 - . gene_id "HERVL_5p14.1k"; transcript_id "HERVL_5p14.1k"; locus "HERVL_5p14.1k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0504"; repClass "LTR"; repEnd "5422"; repFamily "ERVL"; repLeft "5222"; repStart "-232"; chr5 rmsk exon 28505186 28510379 39047 - . gene_id "HERVL_5p14.1k"; transcript_id "HERVL_5p14.1k"; locus "HERVL_5p14.1k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0504"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "1"; repStart "-433"; chr5 rmsk exon 28510380 28510804 2904 - . gene_id "HERVL_5p14.1k"; transcript_id "HERVL_5p14.1k"; locus "HERVL_5p14.1k"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0504"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_5p14.1h ### chr5 rmsk gene 28591890 28594425 . + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0604"; model_cov "1818"; model_pct "31.8"; chr5 rmsk exon 28591890 28592061 421 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "2080"; repFamily "ERVL"; repLeft "-3634"; repStart "1906"; chr5 rmsk exon 28592107 28592856 1040 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "2924"; repFamily "ERVL"; repLeft "-2790"; repStart "2151"; chr5 rmsk exon 28592996 28593147 354 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "-2204"; repStart "3359"; chr5 rmsk exon 28593302 28593366 265 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "3939"; repFamily "ERVL"; repLeft "-1775"; repStart "3876"; chr5 rmsk exon 28593569 28593924 708 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "4548"; repFamily "ERVL"; repLeft "-1166"; repStart "4170"; chr5 rmsk exon 28594151 28594425 653 + . gene_id "ERVLB4_5p14.1h"; transcript_id "ERVLB4_5p14.1h"; locus "ERVLB4_5p14.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0604"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-630"; repStart "4805"; ### MER4B_5p14.1c ### chr5 rmsk gene 28667225 28668348 . - . gene_id "MER4B_5p14.1c"; transcript_id "MER4B_5p14.1c"; locus "MER4B_5p14.1c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0159"; model_cov "726"; model_pct "10.7"; chr5 rmsk exon 28667225 28667363 681 - . gene_id "MER4B_5p14.1c"; transcript_id "MER4B_5p14.1c"; locus "MER4B_5p14.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0159"; repClass "LTR"; repEnd "6150"; repFamily "ERV1"; repLeft "6006"; repStart "-608"; chr5 rmsk exon 28667974 28668348 740 - . gene_id "MER4B_5p14.1c"; transcript_id "MER4B_5p14.1c"; locus "MER4B_5p14.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0159"; repClass "LTR"; repEnd "2245"; repFamily "ERV1"; repLeft "1663"; repStart "-4513"; ### ERVLB4_5p14.1i ### chr5 rmsk gene 28847810 28851374 . + . gene_id "ERVLB4_5p14.1i"; transcript_id "ERVLB4_5p14.1i"; locus "ERVLB4_5p14.1i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0606"; model_cov "3179"; model_pct "55.6"; chr5 rmsk exon 28847810 28850379 17663 + . gene_id "ERVLB4_5p14.1i"; transcript_id "ERVLB4_5p14.1i"; locus "ERVLB4_5p14.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0606"; repClass "LTR"; repEnd "5106"; repFamily "ERVL"; repLeft "-608"; repStart "2534"; chr5 rmsk exon 28850786 28851374 17663 + . gene_id "ERVLB4_5p14.1i"; transcript_id "ERVLB4_5p14.1i"; locus "ERVLB4_5p14.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0606"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5107"; ### ERVLE_5p13.3a ### chr5 rmsk gene 28921679 28922399 . + . gene_id "ERVLE_5p13.3a"; transcript_id "ERVLE_5p13.3a"; locus "ERVLE_5p13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1331"; model_cov "714"; model_pct "12.6"; chr5 rmsk exon 28921679 28921990 606 + . gene_id "ERVLE_5p13.3a"; transcript_id "ERVLE_5p13.3a"; locus "ERVLE_5p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1331"; repClass "LTR"; repEnd "4090"; repFamily "ERVL"; repLeft "-1577"; repStart "3762"; chr5 rmsk exon 28922022 28922399 514 + . gene_id "ERVLE_5p13.3a"; transcript_id "ERVLE_5p13.3a"; locus "ERVLE_5p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1331"; repClass "LTR"; repEnd "4531"; repFamily "ERVL"; repLeft "-1136"; repStart "4145"; ### ERVLE_5p13.3b ### chr5 rmsk gene 28960070 28962456 . - . gene_id "ERVLE_5p13.3b"; transcript_id "ERVLE_5p13.3b"; locus "ERVLE_5p13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1332"; model_cov "1060"; model_pct "18.7"; chr5 rmsk exon 28960070 28960288 409 - . gene_id "ERVLE_5p13.3b"; transcript_id "ERVLE_5p13.3b"; locus "ERVLE_5p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1332"; repClass "LTR"; repEnd "3020"; repFamily "ERVL"; repLeft "2794"; repStart "-2647"; chr5 rmsk exon 28960675 28960986 322 - . gene_id "ERVLE_5p13.3b"; transcript_id "ERVLE_5p13.3b"; locus "ERVLE_5p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1332"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "2137"; repStart "-3178"; chr5 rmsk exon 28961985 28962456 410 - . gene_id "ERVLE_5p13.3b"; transcript_id "ERVLE_5p13.3b"; locus "ERVLE_5p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1332"; repClass "LTR"; repEnd "945"; repFamily "ERVL"; repLeft "463"; repStart "-4722"; ### HERVL_5p13.3a ### chr5 rmsk gene 28971115 28975134 . - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0505"; model_cov "3515"; model_pct "62.2"; chr5 rmsk exon 28971115 28971183 347 - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0505"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr5 rmsk exon 28971194 28972263 5517 - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0505"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "4399"; repStart "-155"; chr5 rmsk exon 28972259 28974665 17752 - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0505"; repClass "LTR"; repEnd "2416"; repFamily "ERVL"; repLeft "1"; repStart "-3238"; chr5 rmsk exon 28974666 28974713 3122 - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0505"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "398"; repStart "0"; chr5 rmsk exon 28974751 28975134 3122 - . gene_id "HERVL_5p13.3a"; transcript_id "HERVL_5p13.3a"; locus "HERVL_5p13.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0505"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "-47"; ### ERVLB4_5p13.3a ### chr5 rmsk gene 28985893 28987823 . - . gene_id "ERVLB4_5p13.3a"; transcript_id "ERVLB4_5p13.3a"; locus "ERVLB4_5p13.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0607"; model_cov "1329"; model_pct "23.3"; chr5 rmsk exon 28985893 28987232 6029 - . gene_id "ERVLB4_5p13.3a"; transcript_id "ERVLB4_5p13.3a"; locus "ERVLB4_5p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0607"; repClass "LTR"; repEnd "1331"; repFamily "ERVL"; repLeft "2"; repStart "-4383"; chr5 rmsk exon 28987234 28987280 2715 - . gene_id "ERVLB4_5p13.3a"; transcript_id "ERVLB4_5p13.3a"; locus "ERVLB4_5p13.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0607"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "511"; repStart "0"; chr5 rmsk exon 28987332 28987823 2715 - . gene_id "ERVLB4_5p13.3a"; transcript_id "ERVLB4_5p13.3a"; locus "ERVLB4_5p13.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0607"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "4"; repStart "-44"; ### ERVLB4_5p13.3b ### chr5 rmsk gene 29077290 29082742 . - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0608"; model_cov "3611"; model_pct "63.2"; chr5 rmsk exon 29077290 29079241 5323 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "3761"; repFamily "ERVL"; repLeft "1831"; repStart "-1953"; chr5 rmsk exon 29079239 29079750 1513 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "1718"; repFamily "ERVL"; repLeft "1201"; repStart "-3996"; chr5 rmsk exon 29080225 29080537 3183 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "831"; repStart "-4546"; chr5 rmsk exon 29080906 29081383 3183 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "300"; repStart "-4884"; chr5 rmsk exon 29081703 29081986 3183 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "299"; repFamily "ERVL"; repLeft "23"; repStart "-5415"; chr5 rmsk exon 29082335 29082357 3183 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "22"; repFamily "ERVL"; repLeft "1"; repStart "-5692"; chr5 rmsk exon 29082358 29082742 878 - . gene_id "ERVLB4_5p13.3b"; transcript_id "ERVLB4_5p13.3b"; locus "ERVLB4_5p13.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0608"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5p13.3c ### chr5 rmsk gene 29228589 29229558 . - . gene_id "ERVLE_5p13.3c"; transcript_id "ERVLE_5p13.3c"; locus "ERVLE_5p13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1333"; model_cov "970"; model_pct "17.1"; chr5 rmsk exon 29228589 29229558 1323 - . gene_id "ERVLE_5p13.3c"; transcript_id "ERVLE_5p13.3c"; locus "ERVLE_5p13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1333"; repClass "LTR"; repEnd "2883"; repFamily "ERVL"; repLeft "1913"; repStart "-2784"; ### MER41_5p13.3a ### chr5 rmsk gene 29352622 29355405 . + . gene_id "MER41_5p13.3a"; transcript_id "MER41_5p13.3a"; locus "MER41_5p13.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0172"; model_cov "3097"; model_pct "52.1"; chr5 rmsk exon 29352622 29354904 12203 + . gene_id "MER41_5p13.3a"; transcript_id "MER41_5p13.3a"; locus "MER41_5p13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0172"; repClass "LTR"; repEnd "4832"; repFamily "ERV1"; repLeft "-1114"; repStart "1735"; chr5 rmsk exon 29354906 29355405 2098 + . gene_id "MER41_5p13.3a"; transcript_id "MER41_5p13.3a"; locus "MER41_5p13.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0172"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "-79"; ### ERV316A3_5p13.3a ### chr5 rmsk gene 29386995 29388401 . + . gene_id "ERV316A3_5p13.3a"; transcript_id "ERV316A3_5p13.3a"; locus "ERV316A3_5p13.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0978"; model_cov "718"; model_pct "13.7"; chr5 rmsk exon 29386995 29387158 326 + . gene_id "ERV316A3_5p13.3a"; transcript_id "ERV316A3_5p13.3a"; locus "ERV316A3_5p13.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0978"; repClass "LTR"; repEnd "353"; repFamily "ERVL"; repLeft "-69"; repStart "177"; chr5 rmsk exon 29387701 29387911 450 + . gene_id "ERV316A3_5p13.3a"; transcript_id "ERV316A3_5p13.3a"; locus "ERV316A3_5p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0978"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "-4655"; repStart "359"; chr5 rmsk exon 29387905 29388401 714 + . gene_id "ERV316A3_5p13.3a"; transcript_id "ERV316A3_5p13.3a"; locus "ERV316A3_5p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0978"; repClass "LTR"; repEnd "2341"; repFamily "ERVL"; repLeft "-2885"; repStart "1835"; ### HERVFH21_5p13.3 ### chr5 rmsk gene 29389989 29396428 . + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0012"; model_cov "6636"; model_pct "100.0"; chr5 rmsk exon 29389989 29390241 425 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "280"; repFamily "ERVL"; repLeft "-231"; repStart "6"; chr5 rmsk exon 29390115 29390375 937 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "192"; chr5 rmsk exon 29390376 29394498 9168 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "2781"; repFamily "ERV1"; repLeft "-3748"; repStart "-1189"; chr5 rmsk exon 29394635 29396044 2927 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "6113"; repFamily "ERV1"; repLeft "-416"; repStart "3447"; chr5 rmsk exon 29396047 29396303 560 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "280"; repFamily "ERVL"; repLeft "-231"; repStart "2"; chr5 rmsk exon 29396177 29396428 813 + . gene_id "HERVFH21_5p13.3"; transcript_id "HERVFH21_5p13.3"; locus "HERVFH21_5p13.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0012"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "192"; ### ERVLE_5p13.3d ### chr5 rmsk gene 29502700 29505413 . + . gene_id "ERVLE_5p13.3d"; transcript_id "ERVLE_5p13.3d"; locus "ERVLE_5p13.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1336"; model_cov "2203"; model_pct "38.9"; chr5 rmsk exon 29502700 29502988 270 + . gene_id "ERVLE_5p13.3d"; transcript_id "ERVLE_5p13.3d"; locus "ERVLE_5p13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1336"; repClass "LTR"; repEnd "801"; repFamily "ERVL"; repLeft "-4866"; repStart "498"; chr5 rmsk exon 29502964 29503176 333 + . gene_id "ERVLE_5p13.3d"; transcript_id "ERVLE_5p13.3d"; locus "ERVLE_5p13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1336"; repClass "LTR"; repEnd "1391"; repFamily "ERVL"; repLeft "-4276"; repStart "1183"; chr5 rmsk exon 29503744 29505413 2171 + . gene_id "ERVLE_5p13.3d"; transcript_id "ERVLE_5p13.3d"; locus "ERVLE_5p13.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1336"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-2283"; repStart "1692"; ### ERVLE_5p13.3e ### chr5 rmsk gene 29559741 29562109 . + . gene_id "ERVLE_5p13.3e"; transcript_id "ERVLE_5p13.3e"; locus "ERVLE_5p13.3e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1338"; model_cov "1120"; model_pct "19.8"; chr5 rmsk exon 29559741 29560027 1377 + . gene_id "ERVLE_5p13.3e"; transcript_id "ERVLE_5p13.3e"; locus "ERVLE_5p13.3e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_1338"; repClass "LTR"; repEnd "309"; repFamily "ERVL"; repLeft "-105"; repStart "9"; chr5 rmsk exon 29560401 29560951 439 + . gene_id "ERVLE_5p13.3e"; transcript_id "ERVLE_5p13.3e"; locus "ERVLE_5p13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1338"; repClass "LTR"; repEnd "1924"; repFamily "ERVL"; repLeft "-3743"; repStart "1302"; chr5 rmsk exon 29561263 29561529 899 + . gene_id "ERVLE_5p13.3e"; transcript_id "ERVLE_5p13.3e"; locus "ERVLE_5p13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1338"; repClass "LTR"; repEnd "2484"; repFamily "ERVL"; repLeft "-3183"; repStart "2214"; chr5 rmsk exon 29561887 29562109 279 + . gene_id "ERVLE_5p13.3e"; transcript_id "ERVLE_5p13.3e"; locus "ERVLE_5p13.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1338"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "-2569"; repStart "2870"; ### ERV316A3_5p13.3b ### chr5 rmsk gene 29786831 29789693 . - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0979"; model_cov "1942"; model_pct "37.2"; chr5 rmsk exon 29786831 29786918 261 - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0979"; repClass "LTR"; repEnd "4443"; repFamily "ERVL"; repLeft "4356"; repStart "-783"; chr5 rmsk exon 29787021 29787647 1305 - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0979"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "1965"; repStart "-2648"; chr5 rmsk exon 29787678 29787884 327 - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0979"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "2051"; repStart "-2963"; chr5 rmsk exon 29788524 29789248 1547 - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0979"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "815"; repStart "-3688"; chr5 rmsk exon 29789379 29789693 514 - . gene_id "ERV316A3_5p13.3b"; transcript_id "ERV316A3_5p13.3b"; locus "ERV316A3_5p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0979"; repClass "LTR"; repEnd "890"; repFamily "ERVL"; repLeft "583"; repStart "-4336"; ### ERV316A3_5p13.3c ### chr5 rmsk gene 29790275 29790800 . + . gene_id "ERV316A3_5p13.3c"; transcript_id "ERV316A3_5p13.3c"; locus "ERV316A3_5p13.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0980"; model_cov "531"; model_pct "10.2"; chr5 rmsk exon 29790275 29790800 1193 + . gene_id "ERV316A3_5p13.3c"; transcript_id "ERV316A3_5p13.3c"; locus "ERV316A3_5p13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0980"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "-2648"; repStart "2047"; ### ERVLE_5p13.3f ### chr5 rmsk gene 29836266 29840103 . + . gene_id "ERVLE_5p13.3f"; transcript_id "ERVLE_5p13.3f"; locus "ERVLE_5p13.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1339"; model_cov "2563"; model_pct "45.2"; chr5 rmsk exon 29836266 29836878 902 + . gene_id "ERVLE_5p13.3f"; transcript_id "ERVLE_5p13.3f"; locus "ERVLE_5p13.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1339"; repClass "LTR"; repEnd "2301"; repFamily "ERVL"; repLeft "-3366"; repStart "1688"; chr5 rmsk exon 29837854 29838661 713 + . gene_id "ERVLE_5p13.3f"; transcript_id "ERVLE_5p13.3f"; locus "ERVLE_5p13.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1339"; repClass "LTR"; repEnd "3398"; repFamily "ERVL"; repLeft "-2269"; repStart "2482"; chr5 rmsk exon 29838699 29838839 352 + . gene_id "ERVLE_5p13.3f"; transcript_id "ERVLE_5p13.3f"; locus "ERVLE_5p13.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1339"; repClass "LTR"; repEnd "3603"; repFamily "ERVL"; repLeft "-2064"; repStart "3462"; chr5 rmsk exon 29839239 29840103 867 + . gene_id "ERVLE_5p13.3f"; transcript_id "ERVLE_5p13.3f"; locus "ERVLE_5p13.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1339"; repClass "LTR"; repEnd "4938"; repFamily "ERVL"; repLeft "-729"; repStart "4045"; ### PRIMA4_5p13.3 ### chr5 rmsk gene 29863795 29864991 . + . gene_id "PRIMA4_5p13.3"; transcript_id "PRIMA4_5p13.3"; locus "PRIMA4_5p13.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0076"; model_cov "1236"; model_pct "14.9"; chr5 rmsk exon 29863795 29863990 643 + . gene_id "PRIMA4_5p13.3"; transcript_id "PRIMA4_5p13.3"; locus "PRIMA4_5p13.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0076"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "-7497"; repStart "564"; chr5 rmsk exon 29863985 29864991 2479 + . gene_id "PRIMA4_5p13.3"; transcript_id "PRIMA4_5p13.3"; locus "PRIMA4_5p13.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0076"; repClass "LTR"; repEnd "3112"; repFamily "ERV1"; repLeft "-5158"; repStart "2085"; ### ERVLE_5p13.3g ### chr5 rmsk gene 29872684 29875544 . + . gene_id "ERVLE_5p13.3g"; transcript_id "ERVLE_5p13.3g"; locus "ERVLE_5p13.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1340"; model_cov "2330"; model_pct "41.1"; chr5 rmsk exon 29872684 29873052 426 + . gene_id "ERVLE_5p13.3g"; transcript_id "ERVLE_5p13.3g"; locus "ERVLE_5p13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1340"; repClass "LTR"; repEnd "1859"; repFamily "ERVL"; repLeft "-3808"; repStart "1450"; chr5 rmsk exon 29873130 29874018 514 + . gene_id "ERVLE_5p13.3g"; transcript_id "ERVLE_5p13.3g"; locus "ERVLE_5p13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1340"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "-2331"; repStart "2463"; chr5 rmsk exon 29874180 29874329 1482 + . gene_id "ERVLE_5p13.3g"; transcript_id "ERVLE_5p13.3g"; locus "ERVLE_5p13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1340"; repClass "LTR"; repEnd "3370"; repFamily "ERVL"; repLeft "-2297"; repStart "3225"; chr5 rmsk exon 29874674 29875544 1482 + . gene_id "ERVLE_5p13.3g"; transcript_id "ERVLE_5p13.3g"; locus "ERVLE_5p13.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1340"; repClass "LTR"; repEnd "4274"; repFamily "ERVL"; repLeft "-1393"; repStart "3371"; ### HUERSP3_5p13.3 ### chr5 rmsk gene 29918420 29923451 . - . gene_id "HUERSP3_5p13.3"; transcript_id "HUERSP3_5p13.3"; locus "HUERSP3_5p13.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0060"; model_cov "4484"; model_pct "50.3"; chr5 rmsk exon 29918420 29919035 4092 - . gene_id "HUERSP3_5p13.3"; transcript_id "HUERSP3_5p13.3"; locus "HUERSP3_5p13.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0060"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 29919039 29921070 12762 - . gene_id "HUERSP3_5p13.3"; transcript_id "HUERSP3_5p13.3"; locus "HUERSP3_5p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0060"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "6889"; repStart "-4"; chr5 rmsk exon 29921065 29923451 15314 - . gene_id "HUERSP3_5p13.3"; transcript_id "HUERSP3_5p13.3"; locus "HUERSP3_5p13.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0060"; repClass "LTR"; repEnd "6655"; repFamily "ERV1"; repLeft "4197"; repStart "-2264"; ### ERVLE_5p13.3h ### chr5 rmsk gene 29970588 29971374 . - . gene_id "ERVLE_5p13.3h"; transcript_id "ERVLE_5p13.3h"; locus "ERVLE_5p13.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1341"; model_cov "825"; model_pct "14.6"; chr5 rmsk exon 29970588 29971374 1990 - . gene_id "ERVLE_5p13.3h"; transcript_id "ERVLE_5p13.3h"; locus "ERVLE_5p13.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1341"; repClass "LTR"; repEnd "4460"; repFamily "ERVL"; repLeft "3635"; repStart "-1207"; ### ERVLB4_5p13.3d ### chr5 rmsk gene 30205509 30208588 . + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; category "insert*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0611"; model_cov "1264"; model_pct "22.1"; chr5 rmsk exon 30205509 30205865 1729 + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0611"; prev_strand "-"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "1"; repStart "-49"; chr5 rmsk exon 30205921 30206321 1900 + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0611"; prev_strand "-"; repClass "LTR"; repEnd "5692"; repFamily "ERVL"; repLeft "5276"; repStart "-22"; chr5 rmsk exon 30206321 30207535 6625 + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0611"; repClass "LTR"; repEnd "5608"; repFamily "ERVL"; repLeft "-106"; repStart "4344"; chr5 rmsk exon 30207548 30207946 3827 + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0611"; prev_strand "-"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "3910"; repStart "-1420"; chr5 rmsk exon 30208251 30208588 3827 + . gene_id "ERVLB4_5p13.3d"; transcript_id "ERVLB4_5p13.3d"; locus "ERVLB4_5p13.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0611"; prev_strand "-"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "3570"; repStart "-1805"; ### MER61_5p13.3 ### chr5 rmsk gene 30237440 30239507 . + . gene_id "MER61_5p13.3"; transcript_id "MER61_5p13.3"; locus "MER61_5p13.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0151"; model_cov "1757"; model_pct "33.7"; chr5 rmsk exon 30237440 30239507 10434 + . gene_id "MER61_5p13.3"; transcript_id "MER61_5p13.3"; locus "MER61_5p13.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0151"; repClass "LTR"; repEnd "3983"; repFamily "ERV1"; repLeft "-1234"; repStart "2226"; ### HML2_5p13.3 ### chr5 rmsk gene 30486653 30496098 . - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0042"; model_cov "7440"; model_pct "98.7"; chr5 rmsk exon 30486653 30487612 8378 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 30487708 30495147 66061 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr5 rmsk exon 30495148 30496098 8198 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_5p13.3d ### chr5 rmsk gene 30749381 30756199 . - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0981"; model_cov "3868"; model_pct "74.0"; chr5 rmsk exon 30749381 30749828 1440 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 30749829 30752087 5935 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "2968"; repStart "0"; chr5 rmsk exon 30752090 30752246 553 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "2525"; repStart "-2544"; chr5 rmsk exon 30753457 30754311 1846 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "1500"; repFamily "ERVL"; repLeft "558"; repStart "-3726"; chr5 rmsk exon 30755357 30755847 890 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "562"; repFamily "ERVL"; repLeft "51"; repStart "-4664"; chr5 rmsk exon 30755894 30756199 967 - . gene_id "ERV316A3_5p13.3d"; transcript_id "ERV316A3_5p13.3d"; locus "ERV316A3_5p13.3d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0981"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "153"; repStart "0"; ### ERVLE_5p13.3i ### chr5 rmsk gene 31241893 31243441 . - . gene_id "ERVLE_5p13.3i"; transcript_id "ERVLE_5p13.3i"; locus "ERVLE_5p13.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1342"; model_cov "1087"; model_pct "19.2"; chr5 rmsk exon 31241893 31242427 967 - . gene_id "ERVLE_5p13.3i"; transcript_id "ERVLE_5p13.3i"; locus "ERVLE_5p13.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1342"; repClass "LTR"; repEnd "5087"; repFamily "ERVL"; repLeft "4523"; repStart "-580"; chr5 rmsk exon 31242423 31242631 723 - . gene_id "ERVLE_5p13.3i"; transcript_id "ERVLE_5p13.3i"; locus "ERVLE_5p13.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1342"; repClass "LTR"; repEnd "4522"; repFamily "ERVL"; repLeft "4302"; repStart "-1145"; chr5 rmsk exon 31243142 31243441 387 - . gene_id "ERVLE_5p13.3i"; transcript_id "ERVLE_5p13.3i"; locus "ERVLE_5p13.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1342"; repClass "LTR"; repEnd "883"; repFamily "ERVL"; repLeft "580"; repStart "-4784"; ### HML1_5p13.3a ### chr5 rmsk gene 31393883 31395131 . - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0031"; model_cov "889"; model_pct "14.6"; chr5 rmsk exon 31393883 31394257 1947 - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0031"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr5 rmsk exon 31394246 31394292 243 - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0031"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; chr5 rmsk exon 31394296 31394413 794 - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0031"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr5 rmsk exon 31394471 31394657 1566 - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0031"; repClass "LTR"; repEnd "5902"; repFamily "ERVK"; repLeft "5715"; repStart "-194"; chr5 rmsk exon 31394658 31395131 1867 - . gene_id "HML1_5p13.3a"; transcript_id "HML1_5p13.3a"; locus "HML1_5p13.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0031"; repClass "LTR"; repEnd "5602"; repFamily "ERVK"; repLeft "5036"; repStart "-494"; ### HERVW_5p13.3 ### chr5 rmsk gene 31395132 31397814 . - . gene_id "HERVW_5p13.3"; transcript_id "HERVW_5p13.3"; locus "HERVW_5p13.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0115"; model_cov "2710"; model_pct "31.4"; chr5 rmsk exon 31395132 31395180 345 - . gene_id "HERVW_5p13.3"; transcript_id "HERVW_5p13.3"; locus "HERVW_5p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0115"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "433"; repStart "-8145"; chr5 rmsk exon 31395180 31395327 1199 - . gene_id "HERVW_5p13.3"; transcript_id "HERVW_5p13.3"; locus "HERVW_5p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0115"; repClass "LTR"; repEnd "5553"; repFamily "ERV1"; repLeft "5405"; repStart "-3073"; chr5 rmsk exon 31395307 31396628 10455 - . gene_id "HERVW_5p13.3"; transcript_id "HERVW_5p13.3"; locus "HERVW_5p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0115"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr5 rmsk exon 31396614 31397814 8344 - . gene_id "HERVW_5p13.3"; transcript_id "HERVW_5p13.3"; locus "HERVW_5p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0115"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "824"; repStart "-6612"; ### HML1_5p13.3b ### chr5 rmsk gene 31397851 31398996 . - . gene_id "HML1_5p13.3b"; transcript_id "HML1_5p13.3b"; locus "HML1_5p13.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0032"; model_cov "783"; model_pct "12.8"; chr5 rmsk exon 31397851 31398594 4946 - . gene_id "HML1_5p13.3b"; transcript_id "HML1_5p13.3b"; locus "HML1_5p13.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0032"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "1"; repStart "-5312"; chr5 rmsk exon 31398595 31398996 1963 - . gene_id "HML1_5p13.3b"; transcript_id "HML1_5p13.3b"; locus "HML1_5p13.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0032"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### ERV316A3_5p13.3e ### chr5 rmsk gene 31500031 31503600 . + . gene_id "ERV316A3_5p13.3e"; transcript_id "ERV316A3_5p13.3e"; locus "ERV316A3_5p13.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0982"; model_cov "3437"; model_pct "65.8"; chr5 rmsk exon 31500031 31500245 378 + . gene_id "ERV316A3_5p13.3e"; transcript_id "ERV316A3_5p13.3e"; locus "ERV316A3_5p13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0982"; repClass "LTR"; repEnd "1063"; repFamily "ERVL"; repLeft "-4163"; repStart "823"; chr5 rmsk exon 31500296 31503382 8783 + . gene_id "ERV316A3_5p13.3e"; transcript_id "ERV316A3_5p13.3e"; locus "ERV316A3_5p13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0982"; repClass "LTR"; repEnd "4091"; repFamily "ERVL"; repLeft "-1135"; repStart "894"; chr5 rmsk exon 31503420 31503600 342 + . gene_id "ERV316A3_5p13.3e"; transcript_id "ERV316A3_5p13.3e"; locus "ERV316A3_5p13.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0982"; repClass "LTR"; repEnd "213"; repFamily "ERVL"; repLeft "-238"; repStart "22"; ### HERVL_5p13.3b ### chr5 rmsk gene 32287158 32293609 . + . gene_id "HERVL_5p13.3b"; transcript_id "HERVL_5p13.3b"; locus "HERVL_5p13.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0507"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 32287158 32287591 2858 + . gene_id "HERVL_5p13.3b"; transcript_id "HERVL_5p13.3b"; locus "HERVL_5p13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0507"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chr5 rmsk exon 32287596 32293169 45208 + . gene_id "HERVL_5p13.3b"; transcript_id "HERVL_5p13.3b"; locus "HERVL_5p13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0507"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 32293170 32293609 3013 + . gene_id "HERVL_5p13.3b"; transcript_id "HERVL_5p13.3b"; locus "HERVL_5p13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0507"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_5p13.3b ### chr5 rmsk gene 32345628 32348538 . + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0173"; model_cov "1524"; model_pct "25.6"; chr5 rmsk exon 32345628 32345683 616 + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0173"; repClass "LTR"; repEnd "3355"; repFamily "ERV1"; repLeft "-2591"; repStart "3300"; chr5 rmsk exon 32346080 32346180 616 + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0173"; repClass "LTR"; repEnd "3448"; repFamily "ERV1"; repLeft "-2498"; repStart "3356"; chr5 rmsk exon 32346518 32347214 4309 + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0173"; repClass "LTR"; repEnd "4752"; repFamily "ERV1"; repLeft "-1194"; repStart "4091"; chr5 rmsk exon 32347224 32347921 4544 + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0173"; repClass "LTR"; repEnd "3808"; repFamily "ERV1"; repLeft "-2138"; repStart "3092"; chr5 rmsk exon 32347922 32348538 4297 + . gene_id "MER41_5p13.3b"; transcript_id "MER41_5p13.3b"; locus "MER41_5p13.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0173"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5p13.3j ### chr5 rmsk gene 32451650 32454706 . - . gene_id "ERVLE_5p13.3j"; transcript_id "ERVLE_5p13.3j"; locus "ERVLE_5p13.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1343"; model_cov "1144"; model_pct "20.2"; chr5 rmsk exon 32451650 32451705 348 - . gene_id "ERVLE_5p13.3j"; transcript_id "ERVLE_5p13.3j"; locus "ERVLE_5p13.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1343"; repClass "LTR"; repEnd "4056"; repFamily "ERVL"; repLeft "4001"; repStart "-1611"; chr5 rmsk exon 32452269 32452364 399 - . gene_id "ERVLE_5p13.3j"; transcript_id "ERVLE_5p13.3j"; locus "ERVLE_5p13.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1343"; repClass "LTR"; repEnd "4012"; repFamily "ERVL"; repLeft "3917"; repStart "-1655"; chr5 rmsk exon 32453732 32454706 2500 - . gene_id "ERVLE_5p13.3j"; transcript_id "ERVLE_5p13.3j"; locus "ERVLE_5p13.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1343"; repClass "LTR"; repEnd "3905"; repFamily "ERVL"; repLeft "2911"; repStart "-1762"; ### ERVLB4_5p13.3c ### chr5 rmsk gene 32512637 32514294 . + . gene_id "ERVLB4_5p13.3c"; transcript_id "ERVLB4_5p13.3c"; locus "ERVLB4_5p13.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0612"; model_cov "1465"; model_pct "25.6"; chr5 rmsk exon 32512637 32513710 1393 + . gene_id "ERVLB4_5p13.3c"; transcript_id "ERVLB4_5p13.3c"; locus "ERVLB4_5p13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0612"; repClass "LTR"; repEnd "2865"; repFamily "ERVL"; repLeft "-2849"; repStart "1614"; chr5 rmsk exon 32514077 32514294 471 + . gene_id "ERVLB4_5p13.3c"; transcript_id "ERVLB4_5p13.3c"; locus "ERVLB4_5p13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0612"; repClass "LTR"; repEnd "3179"; repFamily "ERVL"; repLeft "-2535"; repStart "2965"; ### ERVL_5p13.3 ### chr5 rmsk gene 32670414 32671410 . - . gene_id "ERVL_5p13.3"; transcript_id "ERVL_5p13.3"; locus "ERVL_5p13.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0140"; model_cov "951"; model_pct "16.5"; chr5 rmsk exon 32670414 32670559 260 - . gene_id "ERVL_5p13.3"; transcript_id "ERVL_5p13.3"; locus "ERVL_5p13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0140"; repClass "LTR"; repEnd "5113"; repFamily "ERVL"; repLeft "4972"; repStart "-644"; chr5 rmsk exon 32670581 32670759 634 - . gene_id "ERVL_5p13.3"; transcript_id "ERVL_5p13.3"; locus "ERVL_5p13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0140"; repClass "LTR"; repEnd "4911"; repFamily "ERVL"; repLeft "4718"; repStart "-846"; chr5 rmsk exon 32670775 32670973 637 - . gene_id "ERVL_5p13.3"; transcript_id "ERVL_5p13.3"; locus "ERVL_5p13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0140"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "4417"; repStart "-1127"; chr5 rmsk exon 32671025 32671410 1296 - . gene_id "ERVL_5p13.3"; transcript_id "ERVL_5p13.3"; locus "ERVL_5p13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0140"; repClass "LTR"; repEnd "4296"; repFamily "ERVL"; repLeft "3892"; repStart "-1461"; ### ERVLE_5p13.3k ### chr5 rmsk gene 32678900 32682314 . - . gene_id "ERVLE_5p13.3k"; transcript_id "ERVLE_5p13.3k"; locus "ERVLE_5p13.3k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1348"; model_cov "754"; model_pct "13.3"; chr5 rmsk exon 32678900 32679181 398 - . gene_id "ERVLE_5p13.3k"; transcript_id "ERVLE_5p13.3k"; locus "ERVLE_5p13.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1348"; repClass "LTR"; repEnd "2034"; repFamily "ERVL"; repLeft "1756"; repStart "-3633"; chr5 rmsk exon 32679215 32679367 351 - . gene_id "ERVLE_5p13.3k"; transcript_id "ERVLE_5p13.3k"; locus "ERVLE_5p13.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1348"; repClass "LTR"; repEnd "1626"; repFamily "ERVL"; repLeft "1469"; repStart "-4041"; chr5 rmsk exon 32681580 32681736 452 - . gene_id "ERVLE_5p13.3k"; transcript_id "ERVLE_5p13.3k"; locus "ERVLE_5p13.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1348"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "1000"; repStart "-4503"; chr5 rmsk exon 32682152 32682314 452 - . gene_id "ERVLE_5p13.3k"; transcript_id "ERVLE_5p13.3k"; locus "ERVLE_5p13.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1348"; repClass "LTR"; repEnd "999"; repFamily "ERVL"; repLeft "844"; repStart "-4668"; ### ERVLE_5p13.3l ### chr5 rmsk gene 33039722 33041554 . + . gene_id "ERVLE_5p13.3l"; transcript_id "ERVLE_5p13.3l"; locus "ERVLE_5p13.3l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1349"; model_cov "619"; model_pct "10.9"; chr5 rmsk exon 33039722 33040089 1178 + . gene_id "ERVLE_5p13.3l"; transcript_id "ERVLE_5p13.3l"; locus "ERVLE_5p13.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1349"; repClass "LTR"; repEnd "477"; repFamily "ERVL"; repLeft "-5190"; repStart "62"; chr5 rmsk exon 33040165 33040243 737 + . gene_id "ERVLE_5p13.3l"; transcript_id "ERVLE_5p13.3l"; locus "ERVLE_5p13.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1349"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "-4859"; repStart "729"; chr5 rmsk exon 33041424 33041554 737 + . gene_id "ERVLE_5p13.3l"; transcript_id "ERVLE_5p13.3l"; locus "ERVLE_5p13.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1349"; repClass "LTR"; repEnd "934"; repFamily "ERVL"; repLeft "-4733"; repStart "809"; ### ERVLE_5p13.3m ### chr5 rmsk gene 33045136 33046529 . + . gene_id "ERVLE_5p13.3m"; transcript_id "ERVLE_5p13.3m"; locus "ERVLE_5p13.3m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1350"; model_cov "1447"; model_pct "25.5"; chr5 rmsk exon 33045136 33046529 4698 + . gene_id "ERVLE_5p13.3m"; transcript_id "ERVLE_5p13.3m"; locus "ERVLE_5p13.3m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1350"; repClass "LTR"; repEnd "2392"; repFamily "ERVL"; repLeft "-3275"; repStart "945"; ### ERVLE_5p13.2a ### chr5 rmsk gene 33923339 33925183 . - . gene_id "ERVLE_5p13.2a"; transcript_id "ERVLE_5p13.2a"; locus "ERVLE_5p13.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1354"; model_cov "1621"; model_pct "28.6"; chr5 rmsk exon 33923339 33923586 784 - . gene_id "ERVLE_5p13.2a"; transcript_id "ERVLE_5p13.2a"; locus "ERVLE_5p13.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1354"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "188"; repStart "-234"; chr5 rmsk exon 33923627 33925183 5937 - . gene_id "ERVLE_5p13.2a"; transcript_id "ERVLE_5p13.2a"; locus "ERVLE_5p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1354"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "653"; repStart "-3393"; ### HERVW_5p13.2a ### chr5 rmsk gene 34062180 34063274 . - . gene_id "HERVW_5p13.2a"; transcript_id "HERVW_5p13.2a"; locus "HERVW_5p13.2a"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0116"; model_cov "921"; model_pct "10.7"; chr5 rmsk exon 34062180 34062334 1191 - . gene_id "HERVW_5p13.2a"; transcript_id "HERVW_5p13.2a"; locus "HERVW_5p13.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0116"; repClass "LTR"; repEnd "1690"; repFamily "ERV1"; repLeft "1538"; repStart "-6936"; chr5 rmsk exon 34062502 34063274 5319 - . gene_id "HERVW_5p13.2a"; transcript_id "HERVW_5p13.2a"; locus "HERVW_5p13.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0116"; repClass "LTR"; repEnd "1548"; repFamily "ERV1"; repLeft "779"; repStart "-7078"; ### HERVL_5p13.2a ### chr5 rmsk gene 34378549 34383052 . + . gene_id "HERVL_5p13.2a"; transcript_id "HERVL_5p13.2a"; locus "HERVL_5p13.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0508"; model_cov "4042"; model_pct "71.5"; chr5 rmsk exon 34378549 34378944 2735 + . gene_id "HERVL_5p13.2a"; transcript_id "HERVL_5p13.2a"; locus "HERVL_5p13.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0508"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr5 rmsk exon 34378980 34379017 2735 + . gene_id "HERVL_5p13.2a"; transcript_id "HERVL_5p13.2a"; locus "HERVL_5p13.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0508"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "405"; chr5 rmsk exon 34379030 34383052 30426 + . gene_id "HERVL_5p13.2a"; transcript_id "HERVL_5p13.2a"; locus "HERVL_5p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0508"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "-1610"; repStart "2"; ### MER4_5p13.2b ### chr5 rmsk gene 34411973 34426406 . + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; category "mergeable*"; intModel "MER4-int"; locid "MER4-int_0279"; model_cov "5420"; model_pct "82.1"; chr5 rmsk exon 34411973 34412404 3021 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0279"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 34412409 34412706 1457 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "332"; repFamily "ERV1"; repLeft "-6266"; repStart "2"; chr5 rmsk exon 34413353 34413425 315 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "-6201"; repStart "329"; chr5 rmsk exon 34413543 34414026 3047 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "-4339"; repStart "1756"; chr5 rmsk exon 34414335 34414578 3047 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "2260"; chr5 rmsk exon 34414663 34415099 2829 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0279"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "-6"; chr5 rmsk exon 34415103 34415599 2521 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6039"; repStart "1"; chr5 rmsk exon 34415636 34416291 3604 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "55"; chr5 rmsk exon 34416312 34416553 1304 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "1010"; repFamily "ERV1"; repLeft "-5588"; repStart "762"; chr5 rmsk exon 34416570 34417270 4033 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr5 rmsk exon 34417499 34417690 2582 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "2931"; repFamily "ERV1"; repLeft "-3667"; repStart "2737"; chr5 rmsk exon 34417982 34418333 2582 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "-3321"; repStart "2932"; chr5 rmsk exon 34418333 34419913 14693 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "5519"; repFamily "ERV1"; repLeft "-1079"; repStart "3878"; chr5 rmsk exon 34420204 34420525 14693 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "-763"; repStart "5520"; chr5 rmsk exon 34420814 34421365 14693 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "6416"; repFamily "ERV1"; repLeft "-182"; repStart "5836"; chr5 rmsk exon 34422240 34422414 14693 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "6594"; repFamily "ERV1"; repLeft "-4"; repStart "6417"; chr5 rmsk exon 34422425 34422874 2761 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0279"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 34422875 34423135 1017 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "1906"; repFamily "ERV1"; repLeft "-4692"; repStart "1664"; chr5 rmsk exon 34423135 34424953 10767 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "6049"; repFamily "ERV1"; repLeft "-549"; repStart "4218"; chr5 rmsk exon 34425245 34425825 10767 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0279"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6050"; chr5 rmsk exon 34426140 34426406 1460 + . gene_id "MER4_5p13.2b"; transcript_id "MER4_5p13.2b"; locus "MER4_5p13.2b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0279"; repClass "LTR"; repEnd "253"; repFamily "ERV1"; repLeft "-212"; repStart "1"; ### MER4_5p13.2a ### chr5 rmsk gene 34455959 34460957 . - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0281"; model_cov "3811"; model_pct "57.8"; chr5 rmsk exon 34455959 34456408 3115 - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0281"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 34456719 34456895 16145 - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0281"; repClass "LTR"; repEnd "6580"; repFamily "ERV1"; repLeft "6411"; repStart "-18"; chr5 rmsk exon 34457204 34459694 16145 - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0281"; repClass "LTR"; repEnd "6410"; repFamily "ERV1"; repLeft "3837"; repStart "-188"; chr5 rmsk exon 34459694 34460589 4477 - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0281"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2737"; repStart "-2917"; chr5 rmsk exon 34460831 34460957 717 - . gene_id "MER4_5p13.2a"; transcript_id "MER4_5p13.2a"; locus "MER4_5p13.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0281"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2370"; repStart "-4103"; ### HERVK11D_5p13.2 ### chr5 rmsk gene 34460958 34468537 . - . gene_id "HERVK11D_5p13.2"; transcript_id "HERVK11D_5p13.2"; locus "HERVK11D_5p13.2"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0011"; model_cov "7750"; model_pct "100.0"; chr5 rmsk exon 34460958 34461810 6409 - . gene_id "HERVK11D_5p13.2"; transcript_id "HERVK11D_5p13.2"; locus "HERVK11D_5p13.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0011"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 34461811 34463729 39749 - . gene_id "HERVK11D_5p13.2"; transcript_id "HERVK11D_5p13.2"; locus "HERVK11D_5p13.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0011"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "5841"; repStart "0"; chr5 rmsk exon 34464034 34467648 39749 - . gene_id "HERVK11D_5p13.2"; transcript_id "HERVK11D_5p13.2"; locus "HERVK11D_5p13.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0011"; repClass "LTR"; repEnd "5840"; repFamily "ERVK"; repLeft "1"; repStart "-1912"; chr5 rmsk exon 34467649 34468537 6858 - . gene_id "HERVK11D_5p13.2"; transcript_id "HERVK11D_5p13.2"; locus "HERVK11D_5p13.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0011"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_5p13.2b ### chr5 rmsk gene 34560551 34562165 . - . gene_id "HERVL_5p13.2b"; transcript_id "HERVL_5p13.2b"; locus "HERVL_5p13.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0509"; model_cov "1600"; model_pct "28.3"; chr5 rmsk exon 34560551 34560618 568 - . gene_id "HERVL_5p13.2b"; transcript_id "HERVL_5p13.2b"; locus "HERVL_5p13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0509"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "1"; repStart "-376"; chr5 rmsk exon 34560619 34561970 9671 - . gene_id "HERVL_5p13.2b"; transcript_id "HERVL_5p13.2b"; locus "HERVL_5p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0509"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4054"; repStart "0"; chr5 rmsk exon 34561971 34562165 1411 - . gene_id "HERVL_5p13.2b"; transcript_id "HERVL_5p13.2b"; locus "HERVL_5p13.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0509"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "31"; repStart "-201"; ### HML3_5p13.2 ### chr5 rmsk gene 34781776 34787225 . - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0089"; model_cov "4495"; model_pct "74.7"; chr5 rmsk exon 34781776 34782263 3816 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 34782282 34784123 14263 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "6013"; repFamily "ERVK"; repLeft "4167"; repStart "-8"; chr5 rmsk exon 34784126 34784998 6757 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "3916"; repFamily "ERVK"; repLeft "3041"; repStart "-2105"; chr5 rmsk exon 34784984 34786171 8871 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "2631"; repFamily "ERVK"; repLeft "1436"; repStart "-3390"; chr5 rmsk exon 34786170 34786744 4139 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr5 rmsk exon 34786745 34787225 3574 - . gene_id "HML3_5p13.2"; transcript_id "HML3_5p13.2"; locus "HML3_5p13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0089"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER61_5p13.2 ### chr5 rmsk gene 35717489 35723193 . - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0152"; model_cov "5777"; model_pct "100.0"; chr5 rmsk exon 35717489 35717819 1960 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0152"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 35717820 35719628 24041 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0152"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3341"; repStart "0"; chr5 rmsk exon 35719920 35721756 24041 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0152"; repClass "LTR"; repEnd "2615"; repFamily "ERV1"; repLeft "-546"; repStart "-2602"; chr5 rmsk exon 35721768 35721810 333 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0152"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chr5 rmsk exon 35721850 35722483 3062 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0152"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "55"; repStart "-4517"; chr5 rmsk exon 35722850 35722903 3062 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0152"; repClass "LTR"; repEnd "54"; repFamily "ERV1"; repLeft "1"; repStart "-5163"; chr5 rmsk exon 35722904 35723193 1554 - . gene_id "MER61_5p13.2"; transcript_id "MER61_5p13.2"; locus "MER61_5p13.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0152"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_5p13.2b ### chr5 rmsk gene 35940127 35942227 . + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1357"; model_cov "1634"; model_pct "28.8"; chr5 rmsk exon 35940127 35940827 3508 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "-4877"; repStart "73"; chr5 rmsk exon 35940891 35941287 3508 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "1216"; repFamily "ERVL"; repLeft "-4451"; repStart "791"; chr5 rmsk exon 35941279 35941334 251 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "-660"; repStart "4947"; chr5 rmsk exon 35941762 35941973 692 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-462"; repStart "4992"; chr5 rmsk exon 35941973 35942065 429 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "-330"; repStart "5241"; chr5 rmsk exon 35942111 35942227 504 + . gene_id "ERVLE_5p13.2b"; transcript_id "ERVLE_5p13.2b"; locus "ERVLE_5p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1357"; repClass "LTR"; repEnd "5568"; repFamily "ERVL"; repLeft "-99"; repStart "5445"; ### HUERSP2_5p13.2 ### chr5 rmsk gene 35960408 35963963 . - . gene_id "HUERSP2_5p13.2"; transcript_id "HUERSP2_5p13.2"; locus "HUERSP2_5p13.2"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0051"; model_cov "2763"; model_pct "89.5"; chr5 rmsk exon 35960408 35961177 4576 - . gene_id "HUERSP2_5p13.2"; transcript_id "HUERSP2_5p13.2"; locus "HUERSP2_5p13.2"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0051"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 35961178 35963963 16934 - . gene_id "HUERSP2_5p13.2"; transcript_id "HUERSP2_5p13.2"; locus "HUERSP2_5p13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0051"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "325"; repStart "0"; ### ERVLB4_5p13.2 ### chr5 rmsk gene 35972144 35976364 . + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0614"; model_cov "3532"; model_pct "61.8"; chr5 rmsk exon 35972144 35972493 1711 + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0614"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "-59"; repStart "4"; chr5 rmsk exon 35972692 35973158 1873 + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0614"; repClass "LTR"; repEnd "691"; repFamily "ERVL"; repLeft "-5023"; repStart "193"; chr5 rmsk exon 35973329 35974909 3482 + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0614"; repClass "LTR"; repEnd "2724"; repFamily "ERVL"; repLeft "-2990"; repStart "967"; chr5 rmsk exon 35974911 35975666 4163 + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0614"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "-1111"; repStart "3841"; chr5 rmsk exon 35975851 35976364 2778 + . gene_id "ERVLB4_5p13.2"; transcript_id "ERVLB4_5p13.2"; locus "ERVLB4_5p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0614"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "-599"; repStart "4600"; ### PRIMA4_5p13.2 ### chr5 rmsk gene 35992818 36001700 . + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0077"; model_cov "7312"; model_pct "88.4"; chr5 rmsk exon 35992818 35993183 4557 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "369"; repFamily "ERV1"; repLeft "-225"; repStart "1"; chr5 rmsk exon 35993476 35993704 4557 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "593"; repFamily "ERV1"; repLeft "-1"; repStart "370"; chr5 rmsk exon 35993706 35993906 40062 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "196"; repFamily "ERV1"; repLeft "-8074"; repStart "1"; chr5 rmsk exon 35993934 35994333 40062 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "-7705"; repStart "197"; chr5 rmsk exon 35994375 35997431 40062 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "3728"; repFamily "ERV1"; repLeft "-4542"; repStart "566"; chr5 rmsk exon 35997725 35998954 40062 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "4943"; repFamily "ERV1"; repLeft "-3327"; repStart "3729"; chr5 rmsk exon 35999254 36000000 40062 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "5694"; repFamily "ERV1"; repLeft "-2576"; repStart "4944"; chr5 rmsk exon 36000068 36001700 12376 + . gene_id "PRIMA4_5p13.2"; transcript_id "PRIMA4_5p13.2"; locus "PRIMA4_5p13.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0077"; repClass "LTR"; repEnd "7385"; repFamily "ERV1"; repLeft "-885"; repStart "5762"; ### HML1_5p13.2 ### chr5 rmsk gene 36059135 36060241 . + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0033"; model_cov "1107"; model_pct "18.2"; chr5 rmsk exon 36059135 36059352 492 + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0033"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-6970"; repStart "-1103"; chr5 rmsk exon 36059418 36059518 462 + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0033"; repClass "LTR"; repEnd "-467"; repFamily "ERVK"; repLeft "-6563"; repStart "-567"; chr5 rmsk exon 36059504 36059629 565 + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0033"; repClass "LTR"; repEnd "306"; repFamily "ERVK"; repLeft "-5790"; repStart "170"; chr5 rmsk exon 36059628 36060167 3131 + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0033"; repClass "LTR"; repEnd "5682"; repFamily "ERVK"; repLeft "-414"; repStart "5100"; chr5 rmsk exon 36060180 36060241 418 + . gene_id "HML1_5p13.2"; transcript_id "HML1_5p13.2"; locus "HML1_5p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0033"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5954"; ### HERVW_5p13.2b ### chr5 rmsk gene 36328700 36333122 . - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0118"; model_cov "3566"; model_pct "41.3"; chr5 rmsk exon 36328700 36329021 2728 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr5 rmsk exon 36329022 36329311 2333 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr5 rmsk exon 36329299 36329340 272 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "7551"; repFamily "ERV1"; repLeft "7510"; repStart "-1075"; chr5 rmsk exon 36329334 36330555 10440 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4798"; repStart "-2607"; chr5 rmsk exon 36330555 36332565 16946 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "3965"; repFamily "ERV1"; repLeft "1952"; repStart "-4661"; chr5 rmsk exon 36332595 36333122 4142 - . gene_id "HERVW_5p13.2b"; transcript_id "HERVW_5p13.2b"; locus "HERVW_5p13.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0118"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERV316A3_5p13.2 ### chr5 rmsk gene 36515383 36516443 . - . gene_id "ERV316A3_5p13.2"; transcript_id "ERV316A3_5p13.2"; locus "ERV316A3_5p13.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0985"; model_cov "662"; model_pct "12.7"; chr5 rmsk exon 36515383 36515431 308 - . gene_id "ERV316A3_5p13.2"; transcript_id "ERV316A3_5p13.2"; locus "ERV316A3_5p13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0985"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "4764"; repStart "-413"; chr5 rmsk exon 36515864 36516443 1147 - . gene_id "ERV316A3_5p13.2"; transcript_id "ERV316A3_5p13.2"; locus "ERV316A3_5p13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0985"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "4158"; repStart "-455"; ### ERVLE_5p13.2c ### chr5 rmsk gene 36707963 36712659 . - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1358"; model_cov "4283"; model_pct "75.6"; chr5 rmsk exon 36707963 36708656 1193 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "5545"; repFamily "ERVL"; repLeft "4897"; repStart "-122"; chr5 rmsk exon 36708833 36709283 940 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3410"; repStart "-1648"; chr5 rmsk exon 36709490 36709871 1599 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "2865"; repStart "-2418"; chr5 rmsk exon 36710054 36711129 2317 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "2855"; repFamily "ERVL"; repLeft "1619"; repStart "-2812"; chr5 rmsk exon 36711265 36711659 700 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "1470"; repFamily "ERVL"; repLeft "1064"; repStart "-4197"; chr5 rmsk exon 36711674 36712659 2339 - . gene_id "ERVLE_5p13.2c"; transcript_id "ERVLE_5p13.2c"; locus "ERVLE_5p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1358"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "2"; repStart "-4665"; ### ERVLE_5p13.2d ### chr5 rmsk gene 36772741 36777062 . + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1359"; model_cov "1725"; model_pct "30.4"; chr5 rmsk exon 36772741 36772997 1069 + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1359"; repClass "LTR"; repEnd "3030"; repFamily "ERVL"; repLeft "-2637"; repStart "2762"; chr5 rmsk exon 36773086 36773203 402 + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1359"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "-2386"; repStart "3169"; chr5 rmsk exon 36774552 36775120 1735 + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1359"; repClass "LTR"; repEnd "3876"; repFamily "ERVL"; repLeft "-1791"; repStart "3279"; chr5 rmsk exon 36776084 36776672 1341 + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1359"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "-1144"; repStart "3877"; chr5 rmsk exon 36776956 36777062 1341 + . gene_id "ERVLE_5p13.2d"; transcript_id "ERVLE_5p13.2d"; locus "ERVLE_5p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1359"; repClass "LTR"; repEnd "4626"; repFamily "ERVL"; repLeft "-1041"; repStart "4524"; ### HML5_5p13.2 ### chr5 rmsk gene 37086386 37094268 . + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0041"; model_cov "6623"; model_pct "96.9"; chr5 rmsk exon 37086386 37086872 2632 + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0041"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 37086873 37087463 3622 + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0041"; repClass "LTR"; repEnd "605"; repFamily "ERVK"; repLeft "-6232"; repStart "1"; chr5 rmsk exon 37087758 37090124 16812 + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0041"; repClass "LTR"; repEnd "3081"; repFamily "ERVK"; repLeft "-3756"; repStart "694"; chr5 rmsk exon 37090135 37093765 25120 + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0041"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3205"; chr5 rmsk exon 37093766 37094268 2631 + . gene_id "HML5_5p13.2"; transcript_id "HML5_5p13.2"; locus "HML5_5p13.2"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0041"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER101_5p13.2a ### chr5 rmsk gene 37255710 37257899 . + . gene_id "MER101_5p13.2a"; transcript_id "MER101_5p13.2a"; locus "MER101_5p13.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0147"; model_cov "956"; model_pct "14.4"; chr5 rmsk exon 37255710 37255766 252 + . gene_id "MER101_5p13.2a"; transcript_id "MER101_5p13.2a"; locus "MER101_5p13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0147"; repClass "LTR"; repEnd "2365"; repFamily "ERV1"; repLeft "-4274"; repStart "2311"; chr5 rmsk exon 37255804 37256289 2704 + . gene_id "MER101_5p13.2a"; transcript_id "MER101_5p13.2a"; locus "MER101_5p13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0147"; repClass "LTR"; repEnd "3243"; repFamily "ERV1"; repLeft "-3396"; repStart "2760"; chr5 rmsk exon 37256390 37256930 1507 + . gene_id "MER101_5p13.2a"; transcript_id "MER101_5p13.2a"; locus "MER101_5p13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0147"; repClass "LTR"; repEnd "3780"; repFamily "ERV1"; repLeft "-2859"; repStart "3408"; chr5 rmsk exon 37257849 37257899 554 + . gene_id "MER101_5p13.2a"; transcript_id "MER101_5p13.2a"; locus "MER101_5p13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0147"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-1493"; repStart "5099"; ### MER101_5p13.2b ### chr5 rmsk gene 37261655 37263651 . + . gene_id "MER101_5p13.2b"; transcript_id "MER101_5p13.2b"; locus "MER101_5p13.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0148"; model_cov "1574"; model_pct "23.7"; chr5 rmsk exon 37261655 37261755 3053 + . gene_id "MER101_5p13.2b"; transcript_id "MER101_5p13.2b"; locus "MER101_5p13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0148"; repClass "LTR"; repEnd "4172"; repFamily "ERV1"; repLeft "-2467"; repStart "4072"; chr5 rmsk exon 37262379 37262636 3053 + . gene_id "MER101_5p13.2b"; transcript_id "MER101_5p13.2b"; locus "MER101_5p13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0148"; repClass "LTR"; repEnd "4438"; repFamily "ERV1"; repLeft "-2201"; repStart "4173"; chr5 rmsk exon 37262940 37263471 3053 + . gene_id "MER101_5p13.2b"; transcript_id "MER101_5p13.2b"; locus "MER101_5p13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0148"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "3598"; chr5 rmsk exon 37263475 37263651 685 + . gene_id "MER101_5p13.2b"; transcript_id "MER101_5p13.2b"; locus "MER101_5p13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0148"; repClass "LTR"; repEnd "6199"; repFamily "ERV1"; repLeft "-440"; repStart "6008"; ### HERVL_5p13.2c ### chr5 rmsk gene 37264509 37271987 . - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0510"; model_cov "5650"; model_pct "99.9"; chr5 rmsk exon 37264509 37264949 3358 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 37264950 37266583 45631 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4022"; repStart "0"; chr5 rmsk exon 37266879 37269074 45631 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "4021"; repFamily "ERVL"; repLeft "1829"; repStart "-1633"; chr5 rmsk exon 37269374 37269763 45631 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "1828"; repFamily "ERVL"; repLeft "1464"; repStart "-3826"; chr5 rmsk exon 37270061 37271528 45631 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "1463"; repFamily "ERVL"; repLeft "1"; repStart "-4191"; chr5 rmsk exon 37271529 37271568 2816 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr5 rmsk exon 37271617 37271987 2816 - . gene_id "HERVL_5p13.2c"; transcript_id "HERVL_5p13.2c"; locus "HERVL_5p13.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0510"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### HARLEQUIN_5p13.2 ### chr5 rmsk gene 37778063 37786157 . - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0069"; model_cov "6892"; model_pct "99.9"; chr5 rmsk exon 37778063 37778518 3633 - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0069"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 37778519 37784013 45873 - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0069"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1402"; repStart "0"; chr5 rmsk exon 37784043 37784323 45873 - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0069"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "1129"; repStart "-5495"; chr5 rmsk exon 37784473 37785699 8378 - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0069"; repClass "LTR"; repEnd "1127"; repFamily "ERV1"; repLeft "1"; repStart "-5769"; chr5 rmsk exon 37785700 37786157 3693 - . gene_id "HARLEQUIN_5p13.2"; transcript_id "HARLEQUIN_5p13.2"; locus "HARLEQUIN_5p13.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0069"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_5p13.2d ### chr5 rmsk gene 37793305 37798236 . + . gene_id "HERVL_5p13.2d"; transcript_id "HERVL_5p13.2d"; locus "HERVL_5p13.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0511"; model_cov "4198"; model_pct "74.2"; chr5 rmsk exon 37793305 37793724 3102 + . gene_id "HERVL_5p13.2d"; transcript_id "HERVL_5p13.2d"; locus "HERVL_5p13.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0511"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 37793725 37795107 33293 + . gene_id "HERVL_5p13.2d"; transcript_id "HERVL_5p13.2d"; locus "HERVL_5p13.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0511"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "-4269"; repStart "1"; chr5 rmsk exon 37795417 37798236 33293 + . gene_id "HERVL_5p13.2d"; transcript_id "HERVL_5p13.2d"; locus "HERVL_5p13.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0511"; repClass "LTR"; repEnd "4200"; repFamily "ERVL"; repLeft "-1454"; repStart "1386"; ### ERVLE_5p13.2e ### chr5 rmsk gene 38196883 38200966 . + . gene_id "ERVLE_5p13.2e"; transcript_id "ERVLE_5p13.2e"; locus "ERVLE_5p13.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1361"; model_cov "2329"; model_pct "41.1"; chr5 rmsk exon 38196883 38197385 829 + . gene_id "ERVLE_5p13.2e"; transcript_id "ERVLE_5p13.2e"; locus "ERVLE_5p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1361"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "-4046"; repStart "1104"; chr5 rmsk exon 38198494 38198645 414 + . gene_id "ERVLE_5p13.2e"; transcript_id "ERVLE_5p13.2e"; locus "ERVLE_5p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1361"; repClass "LTR"; repEnd "2118"; repFamily "ERVL"; repLeft "-3549"; repStart "1961"; chr5 rmsk exon 38199365 38200689 1925 + . gene_id "ERVLE_5p13.2e"; transcript_id "ERVLE_5p13.2e"; locus "ERVLE_5p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1361"; repClass "LTR"; repEnd "4095"; repFamily "ERVL"; repLeft "-1572"; repStart "2722"; chr5 rmsk exon 38200686 38200966 493 + . gene_id "ERVLE_5p13.2e"; transcript_id "ERVLE_5p13.2e"; locus "ERVLE_5p13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1361"; repClass "LTR"; repEnd "4482"; repFamily "ERVL"; repLeft "-1185"; repStart "4200"; ### MER4B_5p13.1a ### chr5 rmsk gene 38632730 38633763 . + . gene_id "MER4B_5p13.1a"; transcript_id "MER4B_5p13.1a"; locus "MER4B_5p13.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0161"; model_cov "1027"; model_pct "15.2"; chr5 rmsk exon 38632730 38633763 6196 + . gene_id "MER4B_5p13.1a"; transcript_id "MER4B_5p13.1a"; locus "MER4B_5p13.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0161"; repClass "LTR"; repEnd "4112"; repFamily "ERV1"; repLeft "-2646"; repStart "3085"; ### ERV316A3_5p13.1a ### chr5 rmsk gene 38645421 38647106 . - . gene_id "ERV316A3_5p13.1a"; transcript_id "ERV316A3_5p13.1a"; locus "ERV316A3_5p13.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0989"; model_cov "882"; model_pct "16.9"; chr5 rmsk exon 38645421 38645861 1193 - . gene_id "ERV316A3_5p13.1a"; transcript_id "ERV316A3_5p13.1a"; locus "ERV316A3_5p13.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0989"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr5 rmsk exon 38645872 38646184 710 - . gene_id "ERV316A3_5p13.1a"; transcript_id "ERV316A3_5p13.1a"; locus "ERV316A3_5p13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0989"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "4852"; repStart "-55"; chr5 rmsk exon 38646190 38646732 1945 - . gene_id "ERV316A3_5p13.1a"; transcript_id "ERV316A3_5p13.1a"; locus "ERV316A3_5p13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0989"; repClass "LTR"; repEnd "4204"; repFamily "ERVL"; repLeft "3641"; repStart "-1022"; chr5 rmsk exon 38646757 38647106 617 - . gene_id "ERV316A3_5p13.1a"; transcript_id "ERV316A3_5p13.1a"; locus "ERV316A3_5p13.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0989"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-17"; repStart "-2"; ### HUERSP3B_5p13.1 ### chr5 rmsk gene 39653791 39655491 . + . gene_id "HUERSP3B_5p13.1"; transcript_id "HUERSP3B_5p13.1"; locus "HUERSP3B_5p13.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0053"; model_cov "1077"; model_pct "14.5"; chr5 rmsk exon 39653791 39654591 5343 + . gene_id "HUERSP3B_5p13.1"; transcript_id "HUERSP3B_5p13.1"; locus "HUERSP3B_5p13.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0053"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "-1596"; repStart "4928"; chr5 rmsk exon 39654591 39654776 1340 + . gene_id "HUERSP3B_5p13.1"; transcript_id "HUERSP3B_5p13.1"; locus "HUERSP3B_5p13.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0053"; repClass "LTR"; repEnd "6144"; repFamily "ERV1"; repLeft "-1274"; repStart "5961"; chr5 rmsk exon 39654977 39655491 2426 + . gene_id "HUERSP3B_5p13.1"; transcript_id "HUERSP3B_5p13.1"; locus "HUERSP3B_5p13.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0053"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-84"; repStart "1"; ### ERV316A3_5p13.1b ### chr5 rmsk gene 39691521 39693328 . - . gene_id "ERV316A3_5p13.1b"; transcript_id "ERV316A3_5p13.1b"; locus "ERV316A3_5p13.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0990"; model_cov "1467"; model_pct "28.1"; chr5 rmsk exon 39691521 39691800 599 - . gene_id "ERV316A3_5p13.1b"; transcript_id "ERV316A3_5p13.1b"; locus "ERV316A3_5p13.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0990"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "16"; repStart "-119"; chr5 rmsk exon 39691880 39693328 3235 - . gene_id "ERV316A3_5p13.1b"; transcript_id "ERV316A3_5p13.1b"; locus "ERV316A3_5p13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0990"; repClass "LTR"; repEnd "5101"; repFamily "ERVL"; repLeft "3634"; repStart "-125"; ### ERV316A3_5p13.1g ### chr5 rmsk gene 39805462 39809036 . + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; category "opposite*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0991"; model_cov "1693"; model_pct "32.4"; chr5 rmsk exon 39805462 39805921 1651 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0991"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "3"; chr5 rmsk exon 39805922 39806755 3879 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0991"; repClass "LTR"; repEnd "839"; repFamily "ERVL"; repLeft "-4387"; repStart "7"; chr5 rmsk exon 39807076 39807932 3879 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0991"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "-3525"; repStart "840"; chr5 rmsk exon 39807932 39808116 373 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0991"; prev_strand "-"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "3542"; repStart "-1345"; chr5 rmsk exon 39808176 39808400 805 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0991"; prev_strand "-"; repClass "LTR"; repEnd "3804"; repFamily "ERVL"; repLeft "3576"; repStart "-1422"; chr5 rmsk exon 39808487 39808543 266 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0991"; prev_strand "-"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "3429"; repStart "-1740"; chr5 rmsk exon 39808601 39809036 1484 + . gene_id "ERV316A3_5p13.1g"; transcript_id "ERV316A3_5p13.1g"; locus "ERV316A3_5p13.1g"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0991"; prev_strand "-"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "3"; repStart "-14"; ### HERVL_5p13.1a ### chr5 rmsk gene 39971679 39976803 . - . gene_id "HERVL_5p13.1a"; transcript_id "HERVL_5p13.1a"; locus "HERVL_5p13.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0512"; model_cov "3920"; model_pct "69.3"; chr5 rmsk exon 39971679 39971731 284 - . gene_id "HERVL_5p13.1a"; transcript_id "HERVL_5p13.1a"; locus "HERVL_5p13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0512"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "388"; repStart "0"; chr5 rmsk exon 39971896 39972275 2643 - . gene_id "HERVL_5p13.1a"; transcript_id "HERVL_5p13.1a"; locus "HERVL_5p13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0512"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "3"; repStart "-48"; chr5 rmsk exon 39972278 39975995 19887 - . gene_id "HERVL_5p13.1a"; transcript_id "HERVL_5p13.1a"; locus "HERVL_5p13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0512"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1734"; repStart "0"; chr5 rmsk exon 39976415 39976803 2506 - . gene_id "HERVL_5p13.1a"; transcript_id "HERVL_5p13.1a"; locus "HERVL_5p13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0512"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### MER4_5p13.1 ### chr5 rmsk gene 40086776 40093232 . + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0283"; model_cov "4991"; model_pct "75.6"; chr5 rmsk exon 40086776 40086857 495 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "603"; chr5 rmsk exon 40086826 40086913 418 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "807"; repFamily "ERV1"; repLeft "-5791"; repStart "751"; chr5 rmsk exon 40087099 40088257 6448 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "3046"; repFamily "ERV1"; repLeft "-3552"; repStart "2086"; chr5 rmsk exon 40088561 40088760 6448 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "-3366"; repStart "3047"; chr5 rmsk exon 40088990 40089820 3600 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "2737"; chr5 rmsk exon 40089815 40090599 15672 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "4668"; repFamily "ERV1"; repLeft "-1930"; repStart "3837"; chr5 rmsk exon 40090894 40092760 15672 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0283"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4669"; chr5 rmsk exon 40092765 40093232 3233 + . gene_id "MER4_5p13.1"; transcript_id "MER4_5p13.1"; locus "MER4_5p13.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0283"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK11_5p13.1 ### chr5 rmsk gene 40102909 40112770 . + . gene_id "HERVK11_5p13.1"; transcript_id "HERVK11_5p13.1"; locus "HERVK11_5p13.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0034"; model_cov "7760"; model_pct "97.6"; chr5 rmsk exon 40102909 40103968 7616 + . gene_id "HERVK11_5p13.1"; transcript_id "HERVK11_5p13.1"; locus "HERVK11_5p13.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0034"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "-14"; repStart "1"; chr5 rmsk exon 40104008 40110722 51003 + . gene_id "HERVK11_5p13.1"; transcript_id "HERVK11_5p13.1"; locus "HERVK11_5p13.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0034"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "1"; chr5 rmsk exon 40110710 40111708 8116 + . gene_id "HERVK11_5p13.1"; transcript_id "HERVK11_5p13.1"; locus "HERVK11_5p13.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0034"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr5 rmsk exon 40111709 40112770 7801 + . gene_id "HERVK11_5p13.1"; transcript_id "HERVK11_5p13.1"; locus "HERVK11_5p13.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0034"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "-14"; repStart "1"; ### MER4B_5p13.1b ### chr5 rmsk gene 40116395 40125081 . - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0162"; model_cov "5048"; model_pct "74.7"; chr5 rmsk exon 40116395 40116467 443 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "828"; repStart "0"; chr5 rmsk exon 40116498 40117089 3337 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; chr5 rmsk exon 40117090 40118422 13718 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5376"; repStart "0"; chr5 rmsk exon 40118725 40120200 13718 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "5375"; repFamily "ERV1"; repLeft "3883"; repStart "-1383"; chr5 rmsk exon 40122565 40123702 6783 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "3894"; repFamily "ERV1"; repLeft "2729"; repStart "-2864"; chr5 rmsk exon 40124049 40125081 5210 - . gene_id "MER4B_5p13.1b"; transcript_id "MER4B_5p13.1b"; locus "MER4B_5p13.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0162"; repClass "LTR"; repEnd "2732"; repFamily "ERV1"; repLeft "1723"; repStart "-4026"; ### MER4B_5p13.1c ### chr5 rmsk gene 40131522 40133551 . - . gene_id "MER4B_5p13.1c"; transcript_id "MER4B_5p13.1c"; locus "MER4B_5p13.1c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0163"; model_cov "1229"; model_pct "18.2"; chr5 rmsk exon 40131522 40132383 4193 - . gene_id "MER4B_5p13.1c"; transcript_id "MER4B_5p13.1c"; locus "MER4B_5p13.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0163"; repClass "LTR"; repEnd "1434"; repFamily "ERV1"; repLeft "735"; repStart "-5324"; chr5 rmsk exon 40132452 40132681 4193 - . gene_id "MER4B_5p13.1c"; transcript_id "MER4B_5p13.1c"; locus "MER4B_5p13.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0163"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "492"; repStart "-6024"; chr5 rmsk exon 40132679 40132961 1681 - . gene_id "MER4B_5p13.1c"; transcript_id "MER4B_5p13.1c"; locus "MER4B_5p13.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0163"; repClass "LTR"; repEnd "289"; repFamily "ERV1"; repLeft "1"; repStart "-6469"; chr5 rmsk exon 40132962 40133551 3225 - . gene_id "MER4B_5p13.1c"; transcript_id "MER4B_5p13.1c"; locus "MER4B_5p13.1c"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0163"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-287"; repStart "0"; ### ERVLB4_5p13.1 ### chr5 rmsk gene 40363095 40366597 . + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0615"; model_cov "2844"; model_pct "49.8"; chr5 rmsk exon 40363095 40363849 8590 + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0615"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2779"; repStart "2178"; chr5 rmsk exon 40364243 40364933 8590 + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0615"; repClass "LTR"; repEnd "3640"; repFamily "ERVL"; repLeft "-2074"; repStart "2936"; chr5 rmsk exon 40364923 40366287 7755 + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0615"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4329"; chr5 rmsk exon 40366290 40366485 1130 + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0615"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "-358"; repStart "1"; chr5 rmsk exon 40366533 40366597 348 + . gene_id "ERVLB4_5p13.1"; transcript_id "ERVLB4_5p13.1"; locus "ERVLB4_5p13.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0615"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-3"; repStart "491"; ### ERVLE_5p13.1 ### chr5 rmsk gene 40515547 40516801 . + . gene_id "ERVLE_5p13.1"; transcript_id "ERVLE_5p13.1"; locus "ERVLE_5p13.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1365"; model_cov "1281"; model_pct "22.6"; chr5 rmsk exon 40515547 40516801 2808 + . gene_id "ERVLE_5p13.1"; transcript_id "ERVLE_5p13.1"; locus "ERVLE_5p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1365"; repClass "LTR"; repEnd "4699"; repFamily "ERVL"; repLeft "-968"; repStart "3418"; ### ERV316A3_5p13.1c ### chr5 rmsk gene 41111329 41114252 . + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0995"; model_cov "2115"; model_pct "40.5"; chr5 rmsk exon 41111329 41111640 1141 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "1263"; repFamily "ERVL"; repLeft "-3963"; repStart "953"; chr5 rmsk exon 41111713 41112874 2853 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "2756"; repFamily "ERVL"; repLeft "-2470"; repStart "1579"; chr5 rmsk exon 41112872 41112970 298 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "2541"; repFamily "ERVL"; repLeft "-2685"; repStart "2404"; chr5 rmsk exon 41112974 41113124 615 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "3093"; repFamily "ERVL"; repLeft "-2133"; repStart "2942"; chr5 rmsk exon 41113418 41113754 1403 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "-69"; repStart "4817"; chr5 rmsk exon 41113809 41114252 1487 + . gene_id "ERV316A3_5p13.1c"; transcript_id "ERV316A3_5p13.1c"; locus "ERV316A3_5p13.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0995"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### HML6_5p13.1 ### chr5 rmsk gene 41473985 41476042 . - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0025"; model_cov "777"; model_pct "10.8"; chr5 rmsk exon 41473985 41474477 3393 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 41474532 41474941 2140 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "1823"; repStart "-4967"; chr5 rmsk exon 41474942 41475004 303 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "1335"; repFamily "ERVK"; repLeft "1280"; repStart "-5867"; chr5 rmsk exon 41474993 41475096 402 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "539"; repStart "-6563"; chr5 rmsk exon 41475163 41475358 769 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "225"; repFamily "ERVK"; repLeft "15"; repStart "-6977"; chr5 rmsk exon 41475665 41475737 392 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "419"; repStart "0"; chr5 rmsk exon 41475747 41476042 2021 - . gene_id "HML6_5p13.1"; transcript_id "HML6_5p13.1"; locus "HML6_5p13.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0025"; repClass "LTR"; repEnd "482"; repFamily "ERVK"; repLeft "185"; repStart "-17"; ### HERVL_5p13.1b ### chr5 rmsk gene 41659381 41665513 . - . gene_id "HERVL_5p13.1b"; transcript_id "HERVL_5p13.1b"; locus "HERVL_5p13.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0513"; model_cov "5634"; model_pct "99.6"; chr5 rmsk exon 41659381 41659424 332 - . gene_id "HERVL_5p13.1b"; transcript_id "HERVL_5p13.1b"; locus "HERVL_5p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0513"; repClass "LTR"; repEnd "35"; repFamily "ERVL"; repLeft "-8"; repStart "-409"; chr5 rmsk exon 41659425 41665041 44203 - . gene_id "HERVL_5p13.1b"; transcript_id "HERVL_5p13.1b"; locus "HERVL_5p13.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0513"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "20"; repStart "0"; chr5 rmsk exon 41665048 41665077 2857 - . gene_id "HERVL_5p13.1b"; transcript_id "HERVL_5p13.1b"; locus "HERVL_5p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0513"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr5 rmsk exon 41665130 41665513 2857 - . gene_id "HERVL_5p13.1b"; transcript_id "HERVL_5p13.1b"; locus "HERVL_5p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0513"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### MER4B_5p13.1d ### chr5 rmsk gene 41880573 41888689 . - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0164"; model_cov "6220"; model_pct "92.0"; chr5 rmsk exon 41880573 41881163 2909 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; chr5 rmsk exon 41881164 41881535 2297 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6385"; repStart "0"; chr5 rmsk exon 41881638 41882746 6585 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "6337"; repFamily "ERV1"; repLeft "5254"; repStart "-421"; chr5 rmsk exon 41884012 41884127 713 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "5263"; repFamily "ERV1"; repLeft "5149"; repStart "-1495"; chr5 rmsk exon 41884120 41888465 18561 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "4708"; repFamily "ERV1"; repLeft "238"; repStart "-2050"; chr5 rmsk exon 41888509 41888689 975 - . gene_id "MER4B_5p13.1d"; transcript_id "MER4B_5p13.1d"; locus "MER4B_5p13.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0164"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "105"; repStart "-6473"; ### HERVL_5p13.1c ### chr5 rmsk gene 41993581 41999956 . - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0514"; model_cov "5369"; model_pct "95.0"; chr5 rmsk exon 41993581 41994050 2889 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr5 rmsk exon 41994051 41998672 35749 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1005"; repStart "0"; chr5 rmsk exon 41998673 41999021 2014 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "704"; repFamily "ERVL"; repLeft "261"; repStart "-4950"; chr5 rmsk exon 41999072 41999346 2164 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "279"; repFamily "ERVL"; repLeft "2"; repStart "-5375"; chr5 rmsk exon 41999348 41999389 2879 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "407"; repStart "0"; chr5 rmsk exon 41999443 41999465 2879 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "386"; repStart "-38"; chr5 rmsk exon 41999576 41999956 2879 - . gene_id "HERVL_5p13.1c"; transcript_id "HERVL_5p13.1c"; locus "HERVL_5p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0514"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "1"; repStart "-59"; ### ERV316A3_5p13.1d ### chr5 rmsk gene 42121529 42124549 . - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0997"; model_cov "2128"; model_pct "40.7"; chr5 rmsk exon 42121529 42121757 713 - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0997"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "213"; repStart "-11"; chr5 rmsk exon 42121989 42123618 3383 - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0997"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "3418"; repStart "-91"; chr5 rmsk exon 42123660 42123903 680 - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0997"; repClass "LTR"; repEnd "2417"; repFamily "ERVL"; repLeft "2171"; repStart "-2809"; chr5 rmsk exon 42123902 42123915 444 - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0997"; repClass "LTR"; repEnd "1727"; repFamily "ERVL"; repLeft "1715"; repStart "-3499"; chr5 rmsk exon 42124412 42124549 444 - . gene_id "ERV316A3_5p13.1d"; transcript_id "ERV316A3_5p13.1d"; locus "ERV316A3_5p13.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0997"; repClass "LTR"; repEnd "1714"; repFamily "ERVL"; repLeft "1561"; repStart "-3512"; ### ERV316A3_5p13.1e ### chr5 rmsk gene 42124929 42126734 . - . gene_id "ERV316A3_5p13.1e"; transcript_id "ERV316A3_5p13.1e"; locus "ERV316A3_5p13.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_0998"; model_cov "834"; model_pct "16.0"; chr5 rmsk exon 42124929 42125072 383 - . gene_id "ERV316A3_5p13.1e"; transcript_id "ERV316A3_5p13.1e"; locus "ERV316A3_5p13.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0998"; repClass "LTR"; repEnd "1883"; repFamily "ERVL"; repLeft "1737"; repStart "-3343"; chr5 rmsk exon 42125108 42125789 911 - . gene_id "ERV316A3_5p13.1e"; transcript_id "ERV316A3_5p13.1e"; locus "ERV316A3_5p13.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_0998"; repClass "LTR"; repEnd "1019"; repFamily "ERVL"; repLeft "331"; repStart "-4207"; chr5 rmsk exon 42126302 42126734 1602 - . gene_id "ERV316A3_5p13.1e"; transcript_id "ERV316A3_5p13.1e"; locus "ERV316A3_5p13.1e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_0998"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "2"; repStart "-6"; ### ERV316A3_5p13.1f ### chr5 rmsk gene 42381821 42384670 . - . gene_id "ERV316A3_5p13.1f"; transcript_id "ERV316A3_5p13.1f"; locus "ERV316A3_5p13.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1000"; model_cov "2434"; model_pct "46.6"; chr5 rmsk exon 42381821 42382765 2467 - . gene_id "ERV316A3_5p13.1f"; transcript_id "ERV316A3_5p13.1f"; locus "ERV316A3_5p13.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1000"; repClass "LTR"; repEnd "3221"; repFamily "ERVL"; repLeft "2233"; repStart "-2005"; chr5 rmsk exon 42382845 42383645 2345 - . gene_id "ERV316A3_5p13.1f"; transcript_id "ERV316A3_5p13.1f"; locus "ERV316A3_5p13.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1000"; repClass "LTR"; repEnd "1528"; repFamily "ERVL"; repLeft "714"; repStart "-3698"; chr5 rmsk exon 42383663 42384281 1470 - . gene_id "ERV316A3_5p13.1f"; transcript_id "ERV316A3_5p13.1f"; locus "ERV316A3_5p13.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1000"; repClass "LTR"; repEnd "639"; repFamily "ERVL"; repLeft "7"; repStart "-4587"; chr5 rmsk exon 42384284 42384670 1735 - . gene_id "ERV316A3_5p13.1f"; transcript_id "ERV316A3_5p13.1f"; locus "ERV316A3_5p13.1f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1000"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "60"; repStart "0"; ### ERVLE_5p12a ### chr5 rmsk gene 42727042 42727840 . - . gene_id "ERVLE_5p12a"; transcript_id "ERVLE_5p12a"; locus "ERVLE_5p12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1367"; model_cov "819"; model_pct "14.5"; chr5 rmsk exon 42727042 42727840 2160 - . gene_id "ERVLE_5p12a"; transcript_id "ERVLE_5p12a"; locus "ERVLE_5p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1367"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "2797"; repStart "-2051"; ### ERV316A3_5p12a ### chr5 rmsk gene 42790505 42792913 . - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1002"; model_cov "1755"; model_pct "33.6"; chr5 rmsk exon 42790505 42790932 1801 - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1002"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 42790960 42791033 305 - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1002"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "5122"; repStart "-27"; chr5 rmsk exon 42791029 42792675 3117 - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1002"; repClass "LTR"; repEnd "1720"; repFamily "ERVL"; repLeft "42"; repStart "-3506"; chr5 rmsk exon 42792690 42792740 268 - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1002"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "412"; repStart "0"; chr5 rmsk exon 42792738 42792913 736 - . gene_id "ERV316A3_5p12a"; transcript_id "ERV316A3_5p12a"; locus "ERV316A3_5p12a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1002"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "1"; repStart "-276"; ### HARLEQUIN_5p12a ### chr5 rmsk gene 42813176 42819811 . + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0070"; model_cov "5684"; model_pct "82.4"; chr5 rmsk exon 42813176 42813649 3747 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 42813650 42814032 2555 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr5 rmsk exon 42814028 42814145 810 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "262"; chr5 rmsk exon 42814141 42814788 4615 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "262"; chr5 rmsk exon 42814774 42815780 6651 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr5 rmsk exon 42815780 42819325 24687 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "3352"; chr5 rmsk exon 42819326 42819811 3855 + . gene_id "HARLEQUIN_5p12a"; transcript_id "HARLEQUIN_5p12a"; locus "HARLEQUIN_5p12a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0070"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_5p12a ### chr5 rmsk gene 42920403 42921689 . - . gene_id "LTR57_5p12a"; transcript_id "LTR57_5p12a"; locus "LTR57_5p12a"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0069"; model_cov "1258"; model_pct "23.5"; chr5 rmsk exon 42920403 42921689 6647 - . gene_id "LTR57_5p12a"; transcript_id "LTR57_5p12a"; locus "LTR57_5p12a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0069"; repClass "LTR"; repEnd "1831"; repFamily "ERVL"; repLeft "573"; repStart "-3512"; ### MER4_5p12a ### chr5 rmsk gene 42964673 42966094 . + . gene_id "MER4_5p12a"; transcript_id "MER4_5p12a"; locus "MER4_5p12a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0284"; model_cov "1146"; model_pct "17.4"; chr5 rmsk exon 42964673 42965013 5715 + . gene_id "MER4_5p12a"; transcript_id "MER4_5p12a"; locus "MER4_5p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0284"; repClass "LTR"; repEnd "4299"; repFamily "ERV1"; repLeft "-2299"; repStart "3970"; chr5 rmsk exon 42965300 42966094 5715 + . gene_id "MER4_5p12a"; transcript_id "MER4_5p12a"; locus "MER4_5p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0284"; repClass "LTR"; repEnd "5117"; repFamily "ERV1"; repLeft "-1481"; repStart "4300"; ### LTR57_5p12b ### chr5 rmsk gene 42975428 42977018 . - . gene_id "LTR57_5p12b"; transcript_id "LTR57_5p12b"; locus "LTR57_5p12b"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0071"; model_cov "1292"; model_pct "24.2"; chr5 rmsk exon 42975428 42975749 7008 - . gene_id "LTR57_5p12b"; transcript_id "LTR57_5p12b"; locus "LTR57_5p12b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0071"; repClass "LTR"; repEnd "1831"; repFamily "ERVL"; repLeft "1507"; repStart "-3512"; chr5 rmsk exon 42976054 42977018 7008 - . gene_id "LTR57_5p12b"; transcript_id "LTR57_5p12b"; locus "LTR57_5p12b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0071"; repClass "LTR"; repEnd "1506"; repFamily "ERVL"; repLeft "538"; repStart "-3837"; ### MER4_5p12b ### chr5 rmsk gene 42986670 42989161 . - . gene_id "MER4_5p12b"; transcript_id "MER4_5p12b"; locus "MER4_5p12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0285"; model_cov "1501"; model_pct "22.7"; chr5 rmsk exon 42986670 42987083 2960 - . gene_id "MER4_5p12b"; transcript_id "MER4_5p12b"; locus "MER4_5p12b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0285"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "138"; repStart "0"; chr5 rmsk exon 42987381 42987516 2960 - . gene_id "MER4_5p12b"; transcript_id "MER4_5p12b"; locus "MER4_5p12b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0285"; repClass "LTR"; repEnd "137"; repFamily "ERV1"; repLeft "1"; repStart "-463"; chr5 rmsk exon 42987522 42989161 8319 - . gene_id "MER4_5p12b"; transcript_id "MER4_5p12b"; locus "MER4_5p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0285"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "5096"; repStart "-1"; ### MER4_5p12c ### chr5 rmsk gene 42996067 42997591 . + . gene_id "MER4_5p12c"; transcript_id "MER4_5p12c"; locus "MER4_5p12c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0286"; model_cov "1226"; model_pct "18.6"; chr5 rmsk exon 42996067 42996467 5424 + . gene_id "MER4_5p12c"; transcript_id "MER4_5p12c"; locus "MER4_5p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0286"; repClass "LTR"; repEnd "4295"; repFamily "ERV1"; repLeft "-2303"; repStart "3881"; chr5 rmsk exon 42996783 42997591 5424 + . gene_id "MER4_5p12c"; transcript_id "MER4_5p12c"; locus "MER4_5p12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0286"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "-1490"; repStart "4296"; ### MER4_5p12d ### chr5 rmsk gene 43020758 43026332 . + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0287"; model_cov "2850"; model_pct "43.2"; chr5 rmsk exon 43020758 43021199 2707 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "1581"; repFamily "ERV1"; repLeft "-5017"; repStart "810"; chr5 rmsk exon 43021862 43022166 2707 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "1861"; repFamily "ERV1"; repLeft "-4737"; repStart "1582"; chr5 rmsk exon 43022596 43022828 7434 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "3521"; repFamily "ERV1"; repLeft "-3077"; repStart "3305"; chr5 rmsk exon 43023125 43023557 7434 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "3962"; repFamily "ERV1"; repLeft "-2636"; repStart "3522"; chr5 rmsk exon 43023827 43024180 7434 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "4300"; repFamily "ERV1"; repLeft "-2298"; repStart "3963"; chr5 rmsk exon 43024478 43024821 7434 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "4641"; repFamily "ERV1"; repLeft "-1957"; repStart "4301"; chr5 rmsk exon 43025873 43026332 7434 + . gene_id "MER4_5p12d"; transcript_id "MER4_5p12d"; locus "MER4_5p12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0287"; repClass "LTR"; repEnd "5109"; repFamily "ERV1"; repLeft "-1489"; repStart "4642"; ### HERVH48_5p12 ### chr5 rmsk gene 43072721 43075673 . - . gene_id "HERVH48_5p12"; transcript_id "HERVH48_5p12"; locus "HERVH48_5p12"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0020"; model_cov "2603"; model_pct "39.1"; chr5 rmsk exon 43072721 43075264 17642 - . gene_id "HERVH48_5p12"; transcript_id "HERVH48_5p12"; locus "HERVH48_5p12"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0020"; repClass "LTR"; repEnd "2604"; repFamily "ERV1"; repLeft "1"; repStart "-4050"; chr5 rmsk exon 43075265 43075673 2999 - . gene_id "HERVH48_5p12"; transcript_id "HERVH48_5p12"; locus "HERVH48_5p12"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0020"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_5p12 ### chr5 rmsk gene 43149894 43159343 . - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0152"; model_cov "4399"; model_pct "79.5"; chr5 rmsk exon 43149894 43150399 1962 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "8"; repStart "-5"; chr5 rmsk exon 43150410 43150507 800 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "5521"; repFamily "ERVL"; repLeft "5440"; repStart "-9"; chr5 rmsk exon 43150794 43150966 800 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "5439"; repFamily "ERVL"; repLeft "5283"; repStart "-91"; chr5 rmsk exon 43150965 43151045 297 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "5282"; repStart "-166"; chr5 rmsk exon 43152502 43152604 456 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "4834"; repFamily "ERVL"; repLeft "4724"; repStart "-696"; chr5 rmsk exon 43152909 43153342 5630 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "4653"; repFamily "ERVL"; repLeft "4161"; repStart "-877"; chr5 rmsk exon 43153665 43154133 5630 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "3712"; repStart "-1370"; chr5 rmsk exon 43154431 43155120 5630 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "3711"; repFamily "ERVL"; repLeft "3029"; repStart "-1819"; chr5 rmsk exon 43155160 43156033 3233 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2046"; repStart "-2595"; chr5 rmsk exon 43156172 43156754 2674 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "868"; repStart "-4073"; chr5 rmsk exon 43156895 43157365 2674 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "867"; repFamily "ERVL"; repLeft "401"; repStart "-4663"; chr5 rmsk exon 43157384 43157627 903 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "174"; repStart "-5115"; chr5 rmsk exon 43158708 43158874 701 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "180"; repFamily "ERVL"; repLeft "17"; repStart "-5350"; chr5 rmsk exon 43158884 43159343 1487 - . gene_id "HERVL40_5p12"; transcript_id "HERVL40_5p12"; locus "HERVL40_5p12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0152"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### ERVLE_5p12b ### chr5 rmsk gene 43281671 43286380 . - . gene_id "ERVLE_5p12b"; transcript_id "ERVLE_5p12b"; locus "ERVLE_5p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1369"; model_cov "3909"; model_pct "69.0"; chr5 rmsk exon 43281671 43283365 1876 - . gene_id "ERVLE_5p12b"; transcript_id "ERVLE_5p12b"; locus "ERVLE_5p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1369"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "2092"; repStart "-735"; chr5 rmsk exon 43283625 43284094 914 - . gene_id "ERVLE_5p12b"; transcript_id "ERVLE_5p12b"; locus "ERVLE_5p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1369"; repClass "LTR"; repEnd "2142"; repFamily "ERVL"; repLeft "1681"; repStart "-3525"; chr5 rmsk exon 43285507 43285786 589 - . gene_id "ERVLE_5p12b"; transcript_id "ERVLE_5p12b"; locus "ERVLE_5p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1369"; repClass "LTR"; repEnd "1289"; repFamily "ERVL"; repLeft "995"; repStart "-4378"; chr5 rmsk exon 43286083 43286380 589 - . gene_id "ERVLE_5p12b"; transcript_id "ERVLE_5p12b"; locus "ERVLE_5p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1369"; repClass "LTR"; repEnd "994"; repFamily "ERVL"; repLeft "680"; repStart "-4673"; ### HERVIP10F_5p12a ### chr5 rmsk gene 43315211 43319940 . - . gene_id "HERVIP10F_5p12a"; transcript_id "HERVIP10F_5p12a"; locus "HERVIP10F_5p12a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0038"; model_cov "4287"; model_pct "55.4"; chr5 rmsk exon 43315211 43315699 3648 - . gene_id "HERVIP10F_5p12a"; transcript_id "HERVIP10F_5p12a"; locus "HERVIP10F_5p12a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0038"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 43315700 43319940 42773 - . gene_id "HERVIP10F_5p12a"; transcript_id "HERVIP10F_5p12a"; locus "HERVIP10F_5p12a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0038"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "3450"; repStart "0"; ### HERVIP10F_5p12b ### chr5 rmsk gene 43319973 43320822 . - . gene_id "HERVIP10F_5p12b"; transcript_id "HERVIP10F_5p12b"; locus "HERVIP10F_5p12b"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0039"; model_cov "860"; model_pct "11.1"; chr5 rmsk exon 43319973 43320822 42773 - . gene_id "HERVIP10F_5p12b"; transcript_id "HERVIP10F_5p12b"; locus "HERVIP10F_5p12b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0039"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "6877"; repStart "0"; ### HERVH_5p12a ### chr5 rmsk gene 43320823 43322830 . - . gene_id "HERVH_5p12a"; transcript_id "HERVH_5p12a"; locus "HERVH_5p12a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0474"; model_cov "1073"; model_pct "13.9"; chr5 rmsk exon 43320823 43321290 3541 - . gene_id "HERVH_5p12a"; transcript_id "HERVH_5p12a"; locus "HERVH_5p12a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0474"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 43321766 43322830 6111 - . gene_id "HERVH_5p12a"; transcript_id "HERVH_5p12a"; locus "HERVH_5p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0474"; repClass "LTR"; repEnd "7559"; repFamily "ERV1"; repLeft "6486"; repStart "-154"; ### HERVH_5p12b ### chr5 rmsk gene 43329037 43333455 . - . gene_id "HERVH_5p12b"; transcript_id "HERVH_5p12b"; locus "HERVH_5p12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0475"; model_cov "4155"; model_pct "53.9"; chr5 rmsk exon 43329037 43329353 1797 - . gene_id "HERVH_5p12b"; transcript_id "HERVH_5p12b"; locus "HERVH_5p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0475"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "4212"; repStart "-3184"; chr5 rmsk exon 43329347 43329669 1338 - . gene_id "HERVH_5p12b"; transcript_id "HERVH_5p12b"; locus "HERVH_5p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0475"; repClass "LTR"; repEnd "4786"; repFamily "ERV1"; repLeft "4534"; repStart "-2927"; chr5 rmsk exon 43329664 43332990 17053 - . gene_id "HERVH_5p12b"; transcript_id "HERVH_5p12b"; locus "HERVH_5p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0475"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "1"; repStart "-4126"; chr5 rmsk exon 43332991 43333455 3390 - . gene_id "HERVH_5p12b"; transcript_id "HERVH_5p12b"; locus "HERVH_5p12b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0475"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_5p12c ### chr5 rmsk gene 43333456 43336643 . - . gene_id "HERVIP10F_5p12c"; transcript_id "HERVIP10F_5p12c"; locus "HERVIP10F_5p12c"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0040"; model_cov "2592"; model_pct "33.5"; chr5 rmsk exon 43333456 43336124 18337 - . gene_id "HERVIP10F_5p12c"; transcript_id "HERVIP10F_5p12c"; locus "HERVIP10F_5p12c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0040"; repClass "LTR"; repEnd "2593"; repFamily "ERV1"; repLeft "1"; repStart "-5144"; chr5 rmsk exon 43336125 43336643 3395 - . gene_id "HERVIP10F_5p12c"; transcript_id "HERVIP10F_5p12c"; locus "HERVIP10F_5p12c"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0040"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_5p12 ### chr5 rmsk gene 43564608 43571507 . + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0060"; model_cov "5159"; model_pct "66.5"; chr5 rmsk exon 43564608 43565146 3208 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr5 rmsk exon 43565148 43565848 10313 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "670"; repFamily "ERV1"; repLeft "-7086"; repStart "1"; chr5 rmsk exon 43566221 43567362 10313 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "1832"; repFamily "ERV1"; repLeft "-5924"; repStart "671"; chr5 rmsk exon 43567363 43567442 21686 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "4498"; repFamily "ERV1"; repLeft "-3258"; repStart "4426"; chr5 rmsk exon 43567742 43570952 21686 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "4499"; chr5 rmsk exon 43570953 43571507 3256 + . gene_id "PRIMA41_5p12"; transcript_id "PRIMA41_5p12"; locus "PRIMA41_5p12"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0060"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_5p12c ### chr5 rmsk gene 43786495 43791592 . + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0476"; model_cov "5352"; model_pct "69.4"; chr5 rmsk exon 43786495 43786860 1945 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 43786861 43789513 13276 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr5 rmsk exon 43789500 43789699 1183 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "3339"; repFamily "ERV1"; repLeft "-4374"; repStart "3140"; chr5 rmsk exon 43789701 43790700 5484 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "6190"; repFamily "ERV1"; repLeft "-1523"; repStart "4932"; chr5 rmsk exon 43790700 43791419 4600 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "5839"; repFamily "ERV1"; repLeft "-1874"; repStart "5108"; chr5 rmsk exon 43791420 43791592 1044 + . gene_id "HERVH_5p12c"; transcript_id "HERVH_5p12c"; locus "HERVH_5p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0476"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6775"; ### ERVLB4_5p12 ### chr5 rmsk gene 43982348 43987405 . - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0617"; model_cov "3089"; model_pct "54.1"; chr5 rmsk exon 43982348 43982766 6441 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "4191"; repFamily "ERVL"; repLeft "3735"; repStart "-1523"; chr5 rmsk exon 43983070 43983842 6441 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "3734"; repFamily "ERVL"; repLeft "2950"; repStart "-1980"; chr5 rmsk exon 43984358 43985032 4216 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2247"; repStart "-2779"; chr5 rmsk exon 43985071 43985306 1512 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "2040"; repStart "-3441"; chr5 rmsk exon 43986324 43986514 1085 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "1838"; repStart "-3672"; chr5 rmsk exon 43986696 43987405 4172 - . gene_id "ERVLB4_5p12"; transcript_id "ERVLB4_5p12"; locus "ERVLB4_5p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0617"; repClass "LTR"; repEnd "1839"; repFamily "ERVL"; repLeft "1115"; repStart "-3875"; ### ERV316A3_5p12b ### chr5 rmsk gene 44004189 44013175 . - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1003"; model_cov "4680"; model_pct "89.6"; chr5 rmsk exon 44004189 44004567 1038 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "1"; repStart "-21"; chr5 rmsk exon 44004569 44004777 624 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "4971"; repStart "-36"; chr5 rmsk exon 44004791 44004925 6182 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "4919"; repFamily "ERVL"; repLeft "4785"; repStart "-307"; chr5 rmsk exon 44005230 44006682 6182 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "4784"; repFamily "ERVL"; repLeft "3247"; repStart "-442"; chr5 rmsk exon 44007412 44007765 6182 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "3246"; repFamily "ERVL"; repLeft "2916"; repStart "-1980"; chr5 rmsk exon 44007769 44008671 2572 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "3216"; repFamily "ERVL"; repLeft "2275"; repStart "-2010"; chr5 rmsk exon 44008675 44008779 568 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "1704"; repFamily "ERVL"; repLeft "1599"; repStart "-3522"; chr5 rmsk exon 44010960 44011298 940 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "1460"; repFamily "ERVL"; repLeft "1153"; repStart "-3766"; chr5 rmsk exon 44011343 44011875 2090 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "593"; repStart "-4097"; chr5 rmsk exon 44012177 44012763 2090 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "592"; repFamily "ERVL"; repLeft "21"; repStart "-4634"; chr5 rmsk exon 44012783 44013175 1185 - . gene_id "ERV316A3_5p12b"; transcript_id "ERV316A3_5p12b"; locus "ERV316A3_5p12b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1003"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "11"; repStart "-8"; ### ERVLE_5p12c ### chr5 rmsk gene 44050957 44053382 . - . gene_id "ERVLE_5p12c"; transcript_id "ERVLE_5p12c"; locus "ERVLE_5p12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1370"; model_cov "1390"; model_pct "24.5"; chr5 rmsk exon 44050957 44051328 1392 - . gene_id "ERVLE_5p12c"; transcript_id "ERVLE_5p12c"; locus "ERVLE_5p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1370"; repClass "LTR"; repEnd "4964"; repFamily "ERVL"; repLeft "4586"; repStart "-703"; chr5 rmsk exon 44051570 44052355 1392 - . gene_id "ERVLE_5p12c"; transcript_id "ERVLE_5p12c"; locus "ERVLE_5p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1370"; repClass "LTR"; repEnd "4585"; repFamily "ERVL"; repLeft "3753"; repStart "-1082"; chr5 rmsk exon 44053196 44053382 281 - . gene_id "ERVLE_5p12c"; transcript_id "ERVLE_5p12c"; locus "ERVLE_5p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1370"; repClass "LTR"; repEnd "3265"; repFamily "ERVL"; repLeft "3085"; repStart "-2402"; ### HERVW_5p12 ### chr5 rmsk gene 44111088 44115077 . + . gene_id "HERVW_5p12"; transcript_id "HERVW_5p12"; locus "HERVW_5p12"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0119"; model_cov "2418"; model_pct "28.0"; chr5 rmsk exon 44111088 44111868 6013 + . gene_id "HERVW_5p12"; transcript_id "HERVW_5p12"; locus "HERVW_5p12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0119"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 44111869 44113155 9636 + . gene_id "HERVW_5p12"; transcript_id "HERVW_5p12"; locus "HERVW_5p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0119"; repClass "LTR"; repEnd "1291"; repFamily "ERV1"; repLeft "-7335"; repStart "1"; chr5 rmsk exon 44113168 44114296 9190 + . gene_id "HERVW_5p12"; transcript_id "HERVW_5p12"; locus "HERVW_5p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0119"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7498"; chr5 rmsk exon 44114297 44115077 6068 + . gene_id "HERVW_5p12"; transcript_id "HERVW_5p12"; locus "HERVW_5p12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0119"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_5p12d ### chr5 rmsk gene 44115078 44120093 . - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0478"; model_cov "4867"; model_pct "63.1"; chr5 rmsk exon 44115078 44115410 2125 - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0478"; repClass "LTR"; repEnd "7484"; repFamily "ERV1"; repLeft "7186"; repStart "-229"; chr5 rmsk exon 44115411 44115465 267 - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0478"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7664"; repStart "0"; chr5 rmsk exon 44115463 44115654 1134 - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0478"; repClass "LTR"; repEnd "6943"; repFamily "ERV1"; repLeft "6758"; repStart "-770"; chr5 rmsk exon 44115643 44119741 20764 - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0478"; repClass "LTR"; repEnd "4336"; repFamily "ERV1"; repLeft "1"; repStart "-3377"; chr5 rmsk exon 44119742 44120093 1967 - . gene_id "HERVH_5p12d"; transcript_id "HERVH_5p12d"; locus "HERVH_5p12d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0478"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "44"; repStart "0"; ### MER61_5p12a ### chr5 rmsk gene 44151702 44159634 . + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0153"; model_cov "5166"; model_pct "99.0"; chr5 rmsk exon 44151702 44152056 1625 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0153"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 44152057 44152201 651 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0153"; repClass "LTR"; repEnd "153"; repFamily "ERV1"; repLeft "-5064"; repStart "2"; chr5 rmsk exon 44154462 44157727 15409 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0153"; repClass "LTR"; repEnd "3853"; repFamily "ERV1"; repLeft "-1364"; repStart "379"; chr5 rmsk exon 44157730 44157965 1657 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0153"; repClass "LTR"; repEnd "4735"; repFamily "ERV1"; repLeft "-482"; repStart "4497"; chr5 rmsk exon 44157953 44158899 6155 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0153"; repClass "LTR"; repEnd "4812"; repFamily "ERV1"; repLeft "-405"; repStart "3857"; chr5 rmsk exon 44158947 44159289 2281 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0153"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4868"; chr5 rmsk exon 44159290 44159634 1417 + . gene_id "MER61_5p12a"; transcript_id "MER61_5p12a"; locus "MER61_5p12a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0153"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_5p12c ### chr5 rmsk gene 44187358 44192012 . - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1004"; model_cov "3339"; model_pct "63.9"; chr5 rmsk exon 44187358 44187500 280 - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1004"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "128"; repStart "-151"; chr5 rmsk exon 44187705 44187815 457 - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1004"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5109"; repStart "0"; chr5 rmsk exon 44187898 44188466 1995 - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1004"; repClass "LTR"; repEnd "4202"; repFamily "ERVL"; repLeft "3629"; repStart "-1024"; chr5 rmsk exon 44188807 44189130 6862 - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1004"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "3207"; repStart "-1685"; chr5 rmsk exon 44189703 44192012 6862 - . gene_id "ERV316A3_5p12c"; transcript_id "ERV316A3_5p12c"; locus "ERV316A3_5p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1004"; repClass "LTR"; repEnd "3206"; repFamily "ERVL"; repLeft "891"; repStart "-2020"; ### MER61_5p12b ### chr5 rmsk gene 44453725 44458866 . - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0154"; model_cov "3989"; model_pct "76.5"; chr5 rmsk exon 44453725 44454118 2484 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0154"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr5 rmsk exon 44454119 44457315 21069 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0154"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1978"; repStart "0"; chr5 rmsk exon 44457301 44457576 1722 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0154"; repClass "LTR"; repEnd "1640"; repFamily "ERV1"; repLeft "1361"; repStart "-3577"; chr5 rmsk exon 44457606 44457967 1910 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0154"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "467"; repStart "-4370"; chr5 rmsk exon 44458369 44458458 296 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0154"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "1"; repStart "-5125"; chr5 rmsk exon 44458470 44458866 2590 - . gene_id "MER61_5p12b"; transcript_id "MER61_5p12b"; locus "MER61_5p12b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0154"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### ERVLE_5p12d ### chr5 rmsk gene 44720506 44721907 . - . gene_id "ERVLE_5p12d"; transcript_id "ERVLE_5p12d"; locus "ERVLE_5p12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1371"; model_cov "1226"; model_pct "21.6"; chr5 rmsk exon 44720506 44721190 769 - . gene_id "ERVLE_5p12d"; transcript_id "ERVLE_5p12d"; locus "ERVLE_5p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1371"; repClass "LTR"; repEnd "2701"; repFamily "ERVL"; repLeft "1862"; repStart "-2966"; chr5 rmsk exon 44721531 44721907 465 - . gene_id "ERVLE_5p12d"; transcript_id "ERVLE_5p12d"; locus "ERVLE_5p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1371"; repClass "LTR"; repEnd "1558"; repFamily "ERVL"; repLeft "1171"; repStart "-4109"; ### MER41_5p12 ### chr5 rmsk gene 44785133 44788577 . - . gene_id "MER41_5p12"; transcript_id "MER41_5p12"; locus "MER41_5p12"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0174"; model_cov "3611"; model_pct "60.7"; chr5 rmsk exon 44785133 44785668 3523 - . gene_id "MER41_5p12"; transcript_id "MER41_5p12"; locus "MER41_5p12"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0174"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr5 rmsk exon 44785669 44787904 12426 - . gene_id "MER41_5p12"; transcript_id "MER41_5p12"; locus "MER41_5p12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0174"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "2856"; repStart "0"; chr5 rmsk exon 44787892 44788473 2013 - . gene_id "MER41_5p12"; transcript_id "MER41_5p12"; locus "MER41_5p12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0174"; repClass "LTR"; repEnd "1477"; repFamily "ERV1"; repLeft "1081"; repStart "-4469"; chr5 rmsk exon 44788465 44788577 599 - . gene_id "MER41_5p12"; transcript_id "MER41_5p12"; locus "MER41_5p12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0174"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "500"; repStart "-5321"; ### HML3_5p12a ### chr5 rmsk gene 44788578 44793529 . + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0090"; model_cov "3909"; model_pct "64.9"; chr5 rmsk exon 44788578 44789089 4041 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 44789090 44789668 4653 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr5 rmsk exon 44789670 44791344 13878 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1125"; chr5 rmsk exon 44791345 44791574 1766 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr5 rmsk exon 44791574 44793017 11188 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4594"; chr5 rmsk exon 44793018 44793529 4060 + . gene_id "HML3_5p12a"; transcript_id "HML3_5p12a"; locus "HML3_5p12a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0090"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_5p12b ### chr5 rmsk gene 44985920 44990332 . + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0091"; model_cov "3103"; model_pct "51.5"; chr5 rmsk exon 44985920 44986425 4163 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "509"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr5 rmsk exon 44986430 44986526 4669 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "86"; repFamily "ERVK"; repLeft "-5935"; repStart "1"; chr5 rmsk exon 44986824 44987344 4669 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "87"; chr5 rmsk exon 44987345 44988864 12020 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1280"; chr5 rmsk exon 44988865 44989095 1839 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr5 rmsk exon 44989082 44989680 4382 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "-825"; repStart "4582"; chr5 rmsk exon 44989679 44989819 1132 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5882"; chr5 rmsk exon 44989820 44990332 4020 + . gene_id "HML3_5p12b"; transcript_id "HML3_5p12b"; locus "HML3_5p12b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0091"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_5p12e ### chr5 rmsk gene 45076234 45076988 . - . gene_id "ERVLE_5p12e"; transcript_id "ERVLE_5p12e"; locus "ERVLE_5p12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1372"; model_cov "757"; model_pct "13.4"; chr5 rmsk exon 45076234 45076988 1623 - . gene_id "ERVLE_5p12e"; transcript_id "ERVLE_5p12e"; locus "ERVLE_5p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1372"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "3950"; repStart "-960"; ### ERV316A3_5p12d ### chr5 rmsk gene 45128042 45130548 . - . gene_id "ERV316A3_5p12d"; transcript_id "ERV316A3_5p12d"; locus "ERV316A3_5p12d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1006"; model_cov "1907"; model_pct "36.5"; chr5 rmsk exon 45128042 45128128 2829 - . gene_id "ERV316A3_5p12d"; transcript_id "ERV316A3_5p12d"; locus "ERV316A3_5p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1006"; repClass "LTR"; repEnd "2235"; repFamily "ERVL"; repLeft "2145"; repStart "-2991"; chr5 rmsk exon 45128440 45129687 2829 - . gene_id "ERV316A3_5p12d"; transcript_id "ERV316A3_5p12d"; locus "ERV316A3_5p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1006"; repClass "LTR"; repEnd "2144"; repFamily "ERVL"; repLeft "930"; repStart "-3082"; chr5 rmsk exon 45129986 45130548 2829 - . gene_id "ERV316A3_5p12d"; transcript_id "ERV316A3_5p12d"; locus "ERV316A3_5p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1006"; repClass "LTR"; repEnd "929"; repFamily "ERVL"; repLeft "326"; repStart "-4297"; ### ERV316A3_5p12e ### chr5 rmsk gene 45154298 45161107 . - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1007"; model_cov "2659"; model_pct "50.9"; chr5 rmsk exon 45154298 45154621 1080 - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1007"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "16"; repStart "-104"; chr5 rmsk exon 45154693 45155799 3400 - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1007"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "4044"; repStart "-74"; chr5 rmsk exon 45157307 45157501 379 - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1007"; repClass "LTR"; repEnd "3325"; repFamily "ERVL"; repLeft "3124"; repStart "-1901"; chr5 rmsk exon 45157568 45158320 1930 - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1007"; repClass "LTR"; repEnd "2323"; repFamily "ERVL"; repLeft "1605"; repStart "-2903"; chr5 rmsk exon 45160482 45161107 1949 - . gene_id "ERV316A3_5p12e"; transcript_id "ERV316A3_5p12e"; locus "ERV316A3_5p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1007"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "880"; repStart "-3714"; ### HARLEQUIN_5p12b ### chr5 rmsk gene 45206107 45208543 . + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0071"; model_cov "2436"; model_pct "35.3"; chr5 rmsk exon 45206107 45206601 3658 + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0071"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr5 rmsk exon 45206602 45206979 2429 + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0071"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr5 rmsk exon 45206975 45207559 4244 + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0071"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "-6042"; repStart "262"; chr5 rmsk exon 45207559 45208086 2758 + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0071"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr5 rmsk exon 45208086 45208543 3591 + . gene_id "HARLEQUIN_5p12b"; transcript_id "HARLEQUIN_5p12b"; locus "HARLEQUIN_5p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0071"; repClass "LTR"; repEnd "3815"; repFamily "ERV1"; repLeft "-3081"; repStart "3352"; ### ERV316A3_5p12f ### chr5 rmsk gene 45862287 45864352 . + . gene_id "ERV316A3_5p12f"; transcript_id "ERV316A3_5p12f"; locus "ERV316A3_5p12f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1008"; model_cov "1697"; model_pct "32.5"; chr5 rmsk exon 45862287 45863952 4504 + . gene_id "ERV316A3_5p12f"; transcript_id "ERV316A3_5p12f"; locus "ERV316A3_5p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1008"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "-16"; repStart "3513"; chr5 rmsk exon 45863967 45864352 1281 + . gene_id "ERV316A3_5p12f"; transcript_id "ERV316A3_5p12f"; locus "ERV316A3_5p12f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1008"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-37"; repStart "3"; ### HML2_5p12 ### chr5 rmsk gene 46000057 46009900 . - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0043"; model_cov "7241"; model_pct "96.1"; chr5 rmsk exon 46000057 46001004 6385 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 46001005 46002716 13121 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0"; chr5 rmsk exon 46002716 46008021 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "217"; repStart "-2002"; chr5 rmsk exon 46008729 46008936 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "216"; repFamily "ERVK"; repLeft "2"; repStart "-7320"; chr5 rmsk exon 46008940 46009900 6205 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "1"; repStart "-3"; ### ERVLE_5q11.1 ### chr5 rmsk gene 50630668 50634250 . + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1374"; model_cov "1439"; model_pct "25.4"; chr5 rmsk exon 50630668 50630825 285 + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1374"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-2315"; repStart "3184"; chr5 rmsk exon 50630869 50631000 407 + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1374"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "-1945"; repStart "3590"; chr5 rmsk exon 50631052 50631124 1580 + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1374"; repClass "LTR"; repEnd "3802"; repFamily "ERVL"; repLeft "-1865"; repStart "3745"; chr5 rmsk exon 50631424 50632396 1580 + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1374"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "-856"; repStart "3803"; chr5 rmsk exon 50634179 50634250 338 + . gene_id "ERVLE_5q11.1"; transcript_id "ERVLE_5q11.1"; locus "ERVLE_5q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1374"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "-472"; repStart "5121"; ### ERV316A3_5q11.1 ### chr5 rmsk gene 51356075 51358262 . + . gene_id "ERV316A3_5q11.1"; transcript_id "ERV316A3_5q11.1"; locus "ERV316A3_5q11.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1010"; model_cov "1343"; model_pct "25.7"; chr5 rmsk exon 51356075 51356207 710 + . gene_id "ERV316A3_5q11.1"; transcript_id "ERV316A3_5q11.1"; locus "ERV316A3_5q11.1"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1010"; repClass "LTR"; repEnd "255"; repFamily "ERVL"; repLeft "-196"; repStart "126"; chr5 rmsk exon 51356335 51356448 710 + . gene_id "ERV316A3_5q11.1"; transcript_id "ERV316A3_5q11.1"; locus "ERV316A3_5q11.1"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1010"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-71"; repStart "256"; chr5 rmsk exon 51356453 51357768 3066 + . gene_id "ERV316A3_5q11.1"; transcript_id "ERV316A3_5q11.1"; locus "ERV316A3_5q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1010"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "-75"; repStart "3808"; chr5 rmsk exon 51357846 51358262 919 + . gene_id "ERV316A3_5q11.1"; transcript_id "ERV316A3_5q11.1"; locus "ERV316A3_5q11.1"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1010"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "8"; ### MER101_5q11.2a ### chr5 rmsk gene 51754538 51755246 . + . gene_id "MER101_5q11.2a"; transcript_id "MER101_5q11.2a"; locus "MER101_5q11.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0149"; model_cov "1090"; model_pct "16.4"; chr5 rmsk exon 51754538 51755246 1134 + . gene_id "MER101_5q11.2a"; transcript_id "MER101_5q11.2a"; locus "MER101_5q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0149"; repClass "LTR"; repEnd "2636"; repFamily "ERV1"; repLeft "-4003"; repStart "1546"; ### MER101_5q11.2b ### chr5 rmsk gene 51758652 51761714 . + . gene_id "MER101_5q11.2b"; transcript_id "MER101_5q11.2b"; locus "MER101_5q11.2b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0150"; model_cov "2265"; model_pct "34.1"; chr5 rmsk exon 51758652 51760818 4071 + . gene_id "MER101_5q11.2b"; transcript_id "MER101_5q11.2b"; locus "MER101_5q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0150"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "2808"; chr5 rmsk exon 51760810 51761271 1823 + . gene_id "MER101_5q11.2b"; transcript_id "MER101_5q11.2b"; locus "MER101_5q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0150"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6168"; chr5 rmsk exon 51761272 51761714 2188 + . gene_id "MER101_5q11.2b"; transcript_id "MER101_5q11.2b"; locus "MER101_5q11.2b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0150"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_5q11.2a ### chr5 rmsk gene 51776476 51779982 . - . gene_id "MER41_5q11.2a"; transcript_id "MER41_5q11.2a"; locus "MER41_5q11.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0176"; model_cov "2645"; model_pct "44.5"; chr5 rmsk exon 51776476 51777033 3686 - . gene_id "MER41_5q11.2a"; transcript_id "MER41_5q11.2a"; locus "MER41_5q11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0176"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "3"; repStart "-88"; chr5 rmsk exon 51777036 51777210 7956 - . gene_id "MER41_5q11.2a"; transcript_id "MER41_5q11.2a"; locus "MER41_5q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0176"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5788"; repStart "0"; chr5 rmsk exon 51777528 51779982 15857 - . gene_id "MER41_5q11.2a"; transcript_id "MER41_5q11.2a"; locus "MER41_5q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0176"; repClass "LTR"; repEnd "5787"; repFamily "ERV1"; repLeft "3300"; repStart "-159"; ### ERV316A3_5q11.2a ### chr5 rmsk gene 52285001 52286838 . + . gene_id "ERV316A3_5q11.2a"; transcript_id "ERV316A3_5q11.2a"; locus "ERV316A3_5q11.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1011"; model_cov "1616"; model_pct "30.9"; chr5 rmsk exon 52285001 52286587 1290 + . gene_id "ERV316A3_5q11.2a"; transcript_id "ERV316A3_5q11.2a"; locus "ERV316A3_5q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1011"; repClass "LTR"; repEnd "1951"; repFamily "ERVL"; repLeft "-3275"; repStart "371"; chr5 rmsk exon 52286788 52286838 1236 + . gene_id "ERV316A3_5q11.2a"; transcript_id "ERV316A3_5q11.2a"; locus "ERV316A3_5q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1011"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "-3238"; repStart "1952"; ### ERV316A3_5q11.2b ### chr5 rmsk gene 52287446 52290115 . + . gene_id "ERV316A3_5q11.2b"; transcript_id "ERV316A3_5q11.2b"; locus "ERV316A3_5q11.2b"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1012"; model_cov "1167"; model_pct "22.3"; chr5 rmsk exon 52287446 52287618 471 + . gene_id "ERV316A3_5q11.2b"; transcript_id "ERV316A3_5q11.2b"; locus "ERV316A3_5q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1012"; repClass "LTR"; repEnd "1857"; repFamily "ERVL"; repLeft "-3369"; repStart "1654"; chr5 rmsk exon 52288143 52288401 857 + . gene_id "ERV316A3_5q11.2b"; transcript_id "ERV316A3_5q11.2b"; locus "ERV316A3_5q11.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1012"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "-193"; repStart "3"; chr5 rmsk exon 52288985 52289148 570 + . gene_id "ERV316A3_5q11.2b"; transcript_id "ERV316A3_5q11.2b"; locus "ERV316A3_5q11.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1012"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-8"; repStart "280"; chr5 rmsk exon 52289168 52290115 1575 + . gene_id "ERV316A3_5q11.2b"; transcript_id "ERV316A3_5q11.2b"; locus "ERV316A3_5q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1012"; repClass "LTR"; repEnd "3779"; repFamily "ERVL"; repLeft "-1447"; repStart "2815"; ### HML3_5q11.2a ### chr5 rmsk gene 52304484 52310228 . + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0092"; model_cov "4748"; model_pct "78.9"; chr5 rmsk exon 52304484 52305004 4226 + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0092"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 52305005 52305764 20683 + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0092"; repClass "LTR"; repEnd "779"; repFamily "ERVK"; repLeft "-5242"; repStart "1"; chr5 rmsk exon 52305822 52307788 20683 + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0092"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "780"; chr5 rmsk exon 52307789 52309725 15656 + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0092"; repClass "LTR"; repEnd "5675"; repFamily "ERVK"; repLeft "-346"; repStart "3723"; chr5 rmsk exon 52309726 52310228 3980 + . gene_id "HML3_5q11.2a"; transcript_id "HML3_5q11.2a"; locus "HML3_5q11.2a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0092"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_5q11.2a ### chr5 rmsk gene 52962628 52964561 . - . gene_id "ERVLB4_5q11.2a"; transcript_id "ERVLB4_5q11.2a"; locus "ERVLB4_5q11.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0618"; model_cov "1276"; model_pct "22.3"; chr5 rmsk exon 52962628 52962707 1127 - . gene_id "ERVLB4_5q11.2a"; transcript_id "ERVLB4_5q11.2a"; locus "ERVLB4_5q11.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0618"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "502"; repStart "-4"; chr5 rmsk exon 52962757 52963280 2089 - . gene_id "ERVLB4_5q11.2a"; transcript_id "ERVLB4_5q11.2a"; locus "ERVLB4_5q11.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0618"; repClass "LTR"; repEnd "501"; repFamily "ERVL"; repLeft "-44"; repStart "-55"; chr5 rmsk exon 52963281 52964561 7281 - . gene_id "ERVLB4_5q11.2a"; transcript_id "ERVLB4_5q11.2a"; locus "ERVLB4_5q11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0618"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4438"; repStart "0"; ### ERV316A3_5q11.2c ### chr5 rmsk gene 53153414 53157627 . - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1014"; model_cov "3149"; model_pct "60.3"; chr5 rmsk exon 53153414 53153835 1066 - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1014"; repClass "LTR"; repEnd "3694"; repFamily "ERVL"; repLeft "3235"; repStart "-1532"; chr5 rmsk exon 53153837 53155184 3737 - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1014"; repClass "LTR"; repEnd "3509"; repFamily "ERVL"; repLeft "2152"; repStart "-1717"; chr5 rmsk exon 53155537 53155709 3737 - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1014"; repClass "LTR"; repEnd "2151"; repFamily "ERVL"; repLeft "1989"; repStart "-3075"; chr5 rmsk exon 53156014 53157103 3737 - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1014"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "817"; repStart "-3238"; chr5 rmsk exon 53157201 53157627 1477 - . gene_id "ERV316A3_5q11.2c"; transcript_id "ERV316A3_5q11.2c"; locus "ERV316A3_5q11.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1014"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-14"; ### HERVH48_5q11.2 ### chr5 rmsk gene 53200331 53205964 . + . gene_id "HERVH48_5q11.2"; transcript_id "HERVH48_5q11.2"; locus "HERVH48_5q11.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0021"; model_cov "5047"; model_pct "75.8"; chr5 rmsk exon 53200331 53200703 2479 + . gene_id "HERVH48_5q11.2"; transcript_id "HERVH48_5q11.2"; locus "HERVH48_5q11.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0021"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "-5"; repStart "1"; chr5 rmsk exon 53200709 53203471 28225 + . gene_id "HERVH48_5q11.2"; transcript_id "HERVH48_5q11.2"; locus "HERVH48_5q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0021"; repClass "LTR"; repEnd "2799"; repFamily "ERV1"; repLeft "-3855"; repStart "1"; chr5 rmsk exon 53203776 53204794 28225 + . gene_id "HERVH48_5q11.2"; transcript_id "HERVH48_5q11.2"; locus "HERVH48_5q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0021"; repClass "LTR"; repEnd "3914"; repFamily "ERV1"; repLeft "-2740"; repStart "2800"; chr5 rmsk exon 53204928 53205964 28225 + . gene_id "HERVH48_5q11.2"; transcript_id "HERVH48_5q11.2"; locus "HERVH48_5q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0021"; repClass "LTR"; repEnd "5050"; repFamily "ERV1"; repLeft "-1604"; repStart "3915"; ### MER4B_5q11.2 ### chr5 rmsk gene 53207227 53213353 . - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0168"; model_cov "5549"; model_pct "82.1"; chr5 rmsk exon 53207227 53208059 4068 - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0168"; repClass "LTR"; repEnd "6514"; repFamily "ERV1"; repLeft "5626"; repStart "-244"; chr5 rmsk exon 53208061 53208820 1491 - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0168"; repClass "LTR"; repEnd "5389"; repFamily "ERV1"; repLeft "4452"; repStart "-1369"; chr5 rmsk exon 53208820 53209449 3665 - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0168"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3436"; repStart "-2670"; chr5 rmsk exon 53209495 53212592 11265 - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0168"; repClass "LTR"; repEnd "3073"; repFamily "ERV1"; repLeft "1"; repStart "-3685"; chr5 rmsk exon 53212593 53213353 5240 - . gene_id "MER4B_5q11.2"; transcript_id "MER4B_5q11.2"; locus "MER4B_5q11.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0168"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV30_5q11.2 ### chr5 rmsk gene 53218680 53224199 . - . gene_id "HERV30_5q11.2"; transcript_id "HERV30_5q11.2"; locus "HERV30_5q11.2"; category "internal"; intModel "HERV30-int"; locid "HERV30-int_0010"; model_cov "4549"; model_pct "55.1"; chr5 rmsk exon 53218680 53219557 1207 - . gene_id "HERV30_5q11.2"; transcript_id "HERV30_5q11.2"; locus "HERV30_5q11.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0010"; repClass "LTR"; repEnd "8256"; repFamily "ERV1"; repLeft "7370"; repStart "-1"; chr5 rmsk exon 53220574 53224199 14540 - . gene_id "HERV30_5q11.2"; transcript_id "HERV30_5q11.2"; locus "HERV30_5q11.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0010"; repClass "LTR"; repEnd "6345"; repFamily "ERV1"; repLeft "2682"; repStart "-1912"; ### ERV316A3_5q11.2d ### chr5 rmsk gene 53259162 53265410 . - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1015"; model_cov "5131"; model_pct "98.2"; chr5 rmsk exon 53259162 53259270 289 - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1015"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "338"; repStart "-2"; chr5 rmsk exon 53259354 53259489 482 - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1015"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "200"; repStart "-115"; chr5 rmsk exon 53259762 53263768 5689 - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1015"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "1077"; repStart "-102"; chr5 rmsk exon 53263977 53265001 1225 - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1015"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "233"; repStart "-3909"; chr5 rmsk exon 53265006 53265410 787 - . gene_id "ERV316A3_5q11.2d"; transcript_id "ERV316A3_5q11.2d"; locus "ERV316A3_5q11.2d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1015"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "1"; repStart "-17"; ### ERV316A3_5q11.2e ### chr5 rmsk gene 53399286 53400644 . - . gene_id "ERV316A3_5q11.2e"; transcript_id "ERV316A3_5q11.2e"; locus "ERV316A3_5q11.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1017"; model_cov "649"; model_pct "12.4"; chr5 rmsk exon 53399286 53399595 547 - . gene_id "ERV316A3_5q11.2e"; transcript_id "ERV316A3_5q11.2e"; locus "ERV316A3_5q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1017"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "312"; repStart "-4597"; chr5 rmsk exon 53399904 53400209 547 - . gene_id "ERV316A3_5q11.2e"; transcript_id "ERV316A3_5q11.2e"; locus "ERV316A3_5q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1017"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "239"; repStart "-4655"; chr5 rmsk exon 53400221 53400644 1085 - . gene_id "ERV316A3_5q11.2e"; transcript_id "ERV316A3_5q11.2e"; locus "ERV316A3_5q11.2e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1017"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "19"; repStart "-4"; ### MER34B_5q11.2 ### chr5 rmsk gene 53638716 53640356 . - . gene_id "MER34B_5q11.2"; transcript_id "MER34B_5q11.2"; locus "MER34B_5q11.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0107"; model_cov "1386"; model_pct "25.9"; chr5 rmsk exon 53638716 53639696 5181 - . gene_id "MER34B_5q11.2"; transcript_id "MER34B_5q11.2"; locus "MER34B_5q11.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0107"; repClass "LTR"; repEnd "2989"; repFamily "ERV1"; repLeft "1997"; repStart "-2367"; chr5 rmsk exon 53639963 53640356 1070 - . gene_id "MER34B_5q11.2"; transcript_id "MER34B_5q11.2"; locus "MER34B_5q11.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0107"; repClass "LTR"; repEnd "1292"; repFamily "ERV1"; repLeft "898"; repStart "-4064"; ### ERVLE_5q11.2a ### chr5 rmsk gene 54327522 54331132 . - . gene_id "ERVLE_5q11.2a"; transcript_id "ERVLE_5q11.2a"; locus "ERVLE_5q11.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1375"; model_cov "2051"; model_pct "36.2"; chr5 rmsk exon 54327522 54327939 1065 - . gene_id "ERVLE_5q11.2a"; transcript_id "ERVLE_5q11.2a"; locus "ERVLE_5q11.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1375"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "174"; repStart "-44"; chr5 rmsk exon 54328242 54328372 1065 - . gene_id "ERVLE_5q11.2a"; transcript_id "ERVLE_5q11.2a"; locus "ERVLE_5q11.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1375"; repClass "LTR"; repEnd "173"; repFamily "ERVL"; repLeft "42"; repStart "-490"; chr5 rmsk exon 54328392 54328781 8214 - . gene_id "ERVLE_5q11.2a"; transcript_id "ERVLE_5q11.2a"; locus "ERVLE_5q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1375"; repClass "LTR"; repEnd "5475"; repFamily "ERVL"; repLeft "5047"; repStart "-192"; chr5 rmsk exon 54329557 54331132 8214 - . gene_id "ERVLE_5q11.2a"; transcript_id "ERVLE_5q11.2a"; locus "ERVLE_5q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1375"; repClass "LTR"; repEnd "5046"; repFamily "ERVL"; repLeft "3423"; repStart "-621"; ### MER41_5q11.2b ### chr5 rmsk gene 54345565 54346755 . + . gene_id "MER41_5q11.2b"; transcript_id "MER41_5q11.2b"; locus "MER41_5q11.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0177"; model_cov "1387"; model_pct "23.3"; chr5 rmsk exon 54345565 54345827 1648 + . gene_id "MER41_5q11.2b"; transcript_id "MER41_5q11.2b"; locus "MER41_5q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0177"; repClass "LTR"; repEnd "-1328"; repFamily "ERV1"; repLeft "-7274"; repStart "-1590"; chr5 rmsk exon 54345826 54346602 4637 + . gene_id "MER41_5q11.2b"; transcript_id "MER41_5q11.2b"; locus "MER41_5q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0177"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "-2960"; repStart "2012"; chr5 rmsk exon 54346604 54346755 911 + . gene_id "MER41_5q11.2b"; transcript_id "MER41_5q11.2b"; locus "MER41_5q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0177"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1866"; ### HML3_5q11.2b ### chr5 rmsk gene 54498219 54505406 . - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0093"; model_cov "6017"; model_pct "99.9"; chr5 rmsk exon 54498219 54498708 4050 - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0093"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 54498709 54500000 6590 - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0093"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4680"; repStart "0"; chr5 rmsk exon 54500001 54502318 39235 - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0093"; repClass "LTR"; repEnd "4679"; repFamily "ERVK"; repLeft "2360"; repStart "-1342"; chr5 rmsk exon 54502568 54504916 39235 - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0093"; repClass "LTR"; repEnd "2359"; repFamily "ERVK"; repLeft "2"; repStart "-3662"; chr5 rmsk exon 54504917 54505406 4042 - . gene_id "HML3_5q11.2b"; transcript_id "HML3_5q11.2b"; locus "HML3_5q11.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0093"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_5q11.2f ### chr5 rmsk gene 54698551 54699599 . - . gene_id "ERV316A3_5q11.2f"; transcript_id "ERV316A3_5q11.2f"; locus "ERV316A3_5q11.2f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1018"; model_cov "549"; model_pct "10.5"; chr5 rmsk exon 54698551 54698851 753 - . gene_id "ERV316A3_5q11.2f"; transcript_id "ERV316A3_5q11.2f"; locus "ERV316A3_5q11.2f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1018"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "134"; repStart "0"; chr5 rmsk exon 54698929 54699424 1746 - . gene_id "ERV316A3_5q11.2f"; transcript_id "ERV316A3_5q11.2f"; locus "ERV316A3_5q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1018"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4676"; repStart "-1"; chr5 rmsk exon 54699437 54699599 341 - . gene_id "ERV316A3_5q11.2f"; transcript_id "ERV316A3_5q11.2f"; locus "ERV316A3_5q11.2f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1018"; repClass "LTR"; repEnd "303"; repFamily "ERVL"; repLeft "132"; repStart "-148"; ### ERV316A3_5q11.2g ### chr5 rmsk gene 55068803 55071639 . - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1020"; model_cov "1469"; model_pct "28.1"; chr5 rmsk exon 55068803 55069252 440 - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1020"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "84"; repStart "-22"; chr5 rmsk exon 55069412 55070464 1162 - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1020"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "4161"; repStart "-27"; chr5 rmsk exon 55070841 55070939 445 - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1020"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "3663"; repStart "-1463"; chr5 rmsk exon 55071011 55071096 272 - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1020"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "3552"; repStart "-1584"; chr5 rmsk exon 55071400 55071639 394 - . gene_id "ERV316A3_5q11.2g"; transcript_id "ERV316A3_5q11.2g"; locus "ERV316A3_5q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1020"; repClass "LTR"; repEnd "909"; repFamily "ERVL"; repLeft "668"; repStart "-4317"; ### HERV9_5q11.2 ### chr5 rmsk gene 55613186 55617951 . + . gene_id "HERV9_5q11.2"; transcript_id "HERV9_5q11.2"; locus "HERV9_5q11.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0055"; model_cov "1786"; model_pct "21.2"; chr5 rmsk exon 55613186 55614867 10901 + . gene_id "HERV9_5q11.2"; transcript_id "HERV9_5q11.2"; locus "HERV9_5q11.2"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0055"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 55615008 55616028 7180 + . gene_id "HERV9_5q11.2"; transcript_id "HERV9_5q11.2"; locus "HERV9_5q11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0055"; repClass "LTR"; repEnd "5175"; repFamily "ERV1"; repLeft "-3261"; repStart "4161"; chr5 rmsk exon 55616819 55617574 5826 + . gene_id "HERV9_5q11.2"; transcript_id "HERV9_5q11.2"; locus "HERV9_5q11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0055"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7664"; chr5 rmsk exon 55617575 55617951 2304 + . gene_id "HERV9_5q11.2"; transcript_id "HERV9_5q11.2"; locus "HERV9_5q11.2"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0055"; repClass "LTR"; repEnd "432"; repFamily "ERV1"; repLeft "-235"; repStart "1"; ### ERV316A3_5q11.2h ### chr5 rmsk gene 55793265 55794016 . - . gene_id "ERV316A3_5q11.2h"; transcript_id "ERV316A3_5q11.2h"; locus "ERV316A3_5q11.2h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1021"; model_cov "553"; model_pct "10.6"; chr5 rmsk exon 55793265 55793359 320 - . gene_id "ERV316A3_5q11.2h"; transcript_id "ERV316A3_5q11.2h"; locus "ERV316A3_5q11.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1021"; repClass "LTR"; repEnd "4774"; repFamily "ERVL"; repLeft "4676"; repStart "-452"; chr5 rmsk exon 55793536 55794016 1313 - . gene_id "ERV316A3_5q11.2h"; transcript_id "ERV316A3_5q11.2h"; locus "ERV316A3_5q11.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1021"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "4202"; repStart "-569"; ### ERVLB4_5q11.2b ### chr5 rmsk gene 56234749 56238003 . + . gene_id "ERVLB4_5q11.2b"; transcript_id "ERVLB4_5q11.2b"; locus "ERVLB4_5q11.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0620"; model_cov "2489"; model_pct "43.6"; chr5 rmsk exon 56234749 56236202 8824 + . gene_id "ERVLB4_5q11.2b"; transcript_id "ERVLB4_5q11.2b"; locus "ERVLB4_5q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0620"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "-4185"; repStart "56"; chr5 rmsk exon 56236996 56238003 6603 + . gene_id "ERVLB4_5q11.2b"; transcript_id "ERVLB4_5q11.2b"; locus "ERVLB4_5q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0620"; repClass "LTR"; repEnd "2540"; repFamily "ERVL"; repLeft "-3174"; repStart "1524"; ### ERV316A3_5q11.2i ### chr5 rmsk gene 56749269 56750819 . + . gene_id "ERV316A3_5q11.2i"; transcript_id "ERV316A3_5q11.2i"; locus "ERV316A3_5q11.2i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1022"; model_cov "1186"; model_pct "22.7"; chr5 rmsk exon 56749269 56750123 2112 + . gene_id "ERV316A3_5q11.2i"; transcript_id "ERV316A3_5q11.2i"; locus "ERV316A3_5q11.2i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1022"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-3523"; repStart "807"; chr5 rmsk exon 56750132 56750363 1275 + . gene_id "ERV316A3_5q11.2i"; transcript_id "ERV316A3_5q11.2i"; locus "ERV316A3_5q11.2i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1022"; repClass "LTR"; repEnd "3000"; repFamily "ERVL"; repLeft "-2226"; repStart "2770"; chr5 rmsk exon 56750754 56750819 1275 + . gene_id "ERV316A3_5q11.2i"; transcript_id "ERV316A3_5q11.2i"; locus "ERV316A3_5q11.2i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1022"; repClass "LTR"; repEnd "3061"; repFamily "ERVL"; repLeft "-2165"; repStart "3001"; ### HERVH_5q11.2 ### chr5 rmsk gene 57016452 57022454 . - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0479"; model_cov "5376"; model_pct "69.7"; chr5 rmsk exon 57016452 57016907 3193 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 57016908 57017439 3286 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr5 rmsk exon 57017433 57018453 6582 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5011"; repStart "-1697"; chr5 rmsk exon 57018452 57019482 4259 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "5743"; repFamily "ERV1"; repLeft "4416"; repStart "-1970"; chr5 rmsk exon 57019483 57021539 12582 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "800"; repStart "-4883"; chr5 rmsk exon 57021598 57022067 1782 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr5 rmsk exon 57022068 57022454 2770 - . gene_id "HERVH_5q11.2"; transcript_id "HERVH_5q11.2"; locus "HERVH_5q11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0479"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_5q11.2 ### chr5 rmsk gene 57223500 57226547 . + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0154"; model_cov "1142"; model_pct "20.7"; chr5 rmsk exon 57223500 57223757 601 + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0154"; repClass "LTR"; repEnd "4143"; repFamily "ERVL"; repLeft "-1387"; repStart "3873"; chr5 rmsk exon 57224717 57224849 467 + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0154"; repClass "LTR"; repEnd "4281"; repFamily "ERVL"; repLeft "-1249"; repStart "4138"; chr5 rmsk exon 57225731 57226286 1632 + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0154"; repClass "LTR"; repEnd "5273"; repFamily "ERVL"; repLeft "-257"; repStart "4698"; chr5 rmsk exon 57226359 57226511 548 + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0154"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "-2"; repStart "5374"; chr5 rmsk exon 57226518 57226547 511 + . gene_id "HERVL40_5q11.2"; transcript_id "HERVL40_5q11.2"; locus "HERVL40_5q11.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0154"; repClass "LTR"; repEnd "31"; repFamily "ERVL"; repLeft "-431"; repStart "2"; ### ERVLE_5q11.2b ### chr5 rmsk gene 57465630 57469978 . - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1376"; model_cov "1624"; model_pct "28.7"; chr5 rmsk exon 57465630 57466010 742 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "5188"; repFamily "ERVL"; repLeft "4792"; repStart "-479"; chr5 rmsk exon 57466354 57466506 365 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "4958"; repFamily "ERVL"; repLeft "4791"; repStart "-709"; chr5 rmsk exon 57466607 57467054 800 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "4345"; repFamily "ERVL"; repLeft "3912"; repStart "-1322"; chr5 rmsk exon 57467485 57467697 487 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "3468"; repFamily "ERVL"; repLeft "3239"; repStart "-2199"; chr5 rmsk exon 57467999 57468070 487 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "3238"; repFamily "ERVL"; repLeft "3175"; repStart "-2429"; chr5 rmsk exon 57468593 57468749 487 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "3174"; repFamily "ERVL"; repLeft "3023"; repStart "-2493"; chr5 rmsk exon 57469806 57469978 317 - . gene_id "ERVLE_5q11.2b"; transcript_id "ERVLE_5q11.2b"; locus "ERVLE_5q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1376"; repClass "LTR"; repEnd "669"; repFamily "ERVL"; repLeft "484"; repStart "-4998"; ### HERVW_5q11.2 ### chr5 rmsk gene 57520023 57522889 . - . gene_id "HERVW_5q11.2"; transcript_id "HERVW_5q11.2"; locus "HERVW_5q11.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0120"; model_cov "2566"; model_pct "29.7"; chr5 rmsk exon 57520023 57520345 2560 - . gene_id "HERVW_5q11.2"; transcript_id "HERVW_5q11.2"; locus "HERVW_5q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0120"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr5 rmsk exon 57520346 57522060 13562 - . gene_id "HERVW_5q11.2"; transcript_id "HERVW_5q11.2"; locus "HERVW_5q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0120"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6902"; repStart "0"; chr5 rmsk exon 57522052 57522889 6548 - . gene_id "HERVW_5q11.2"; transcript_id "HERVW_5q11.2"; locus "HERVW_5q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0120"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "4225"; repStart "-3559"; ### ERVLE_5q11.2c ### chr5 rmsk gene 57562952 57563871 . - . gene_id "ERVLE_5q11.2c"; transcript_id "ERVLE_5q11.2c"; locus "ERVLE_5q11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1378"; model_cov "901"; model_pct "15.9"; chr5 rmsk exon 57562952 57563871 1525 - . gene_id "ERVLE_5q11.2c"; transcript_id "ERVLE_5q11.2c"; locus "ERVLE_5q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1378"; repClass "LTR"; repEnd "5356"; repFamily "ERVL"; repLeft "4455"; repStart "-311"; ### ERV316A3_5q11.2j ### chr5 rmsk gene 57641569 57642412 . + . gene_id "ERV316A3_5q11.2j"; transcript_id "ERV316A3_5q11.2j"; locus "ERV316A3_5q11.2j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1023"; model_cov "870"; model_pct "16.6"; chr5 rmsk exon 57641569 57642412 780 + . gene_id "ERV316A3_5q11.2j"; transcript_id "ERV316A3_5q11.2j"; locus "ERV316A3_5q11.2j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1023"; repClass "LTR"; repEnd "3557"; repFamily "ERVL"; repLeft "-1669"; repStart "2687"; ### ERV316A3_5q11.2k ### chr5 rmsk gene 57854923 57857442 . - . gene_id "ERV316A3_5q11.2k"; transcript_id "ERV316A3_5q11.2k"; locus "ERV316A3_5q11.2k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1024"; model_cov "1453"; model_pct "27.8"; chr5 rmsk exon 57854923 57855368 1182 - . gene_id "ERV316A3_5q11.2k"; transcript_id "ERV316A3_5q11.2k"; locus "ERV316A3_5q11.2k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1024"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 57855770 57856562 1594 - . gene_id "ERV316A3_5q11.2k"; transcript_id "ERV316A3_5q11.2k"; locus "ERV316A3_5q11.2k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1024"; repClass "LTR"; repEnd "4588"; repFamily "ERVL"; repLeft "3797"; repStart "-638"; chr5 rmsk exon 57856866 57857442 1685 - . gene_id "ERV316A3_5q11.2k"; transcript_id "ERV316A3_5q11.2k"; locus "ERV316A3_5q11.2k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1024"; repClass "LTR"; repEnd "4237"; repFamily "ERVL"; repLeft "3575"; repStart "-989"; ### ERV316A3_5q11.2l ### chr5 rmsk gene 57948669 57951270 . + . gene_id "ERV316A3_5q11.2l"; transcript_id "ERV316A3_5q11.2l"; locus "ERV316A3_5q11.2l"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1025"; model_cov "1847"; model_pct "35.3"; chr5 rmsk exon 57948669 57949094 1144 + . gene_id "ERV316A3_5q11.2l"; transcript_id "ERV316A3_5q11.2l"; locus "ERV316A3_5q11.2l"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1025"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr5 rmsk exon 57949098 57949306 269 + . gene_id "ERV316A3_5q11.2l"; transcript_id "ERV316A3_5q11.2l"; locus "ERV316A3_5q11.2l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1025"; repClass "LTR"; repEnd "3264"; repFamily "ERVL"; repLeft "-1962"; repStart "3058"; chr5 rmsk exon 57949461 57951002 4459 + . gene_id "ERV316A3_5q11.2l"; transcript_id "ERV316A3_5q11.2l"; locus "ERV316A3_5q11.2l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1025"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "3582"; chr5 rmsk exon 57951027 57951270 532 + . gene_id "ERV316A3_5q11.2l"; transcript_id "ERV316A3_5q11.2l"; locus "ERV316A3_5q11.2l"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1025"; repClass "LTR"; repEnd "274"; repFamily "ERVL"; repLeft "-177"; repStart "22"; ### ERVLE_5q11.2d ### chr5 rmsk gene 57972916 57975460 . - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1379"; model_cov "1971"; model_pct "34.8"; chr5 rmsk exon 57972916 57973039 365 - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1379"; repClass "LTR"; repEnd "5476"; repFamily "ERVL"; repLeft "5352"; repStart "-191"; chr5 rmsk exon 57973117 57973329 470 - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1379"; repClass "LTR"; repEnd "5239"; repFamily "ERVL"; repLeft "5017"; repStart "-428"; chr5 rmsk exon 57973466 57973646 470 - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1379"; repClass "LTR"; repEnd "4841"; repFamily "ERVL"; repLeft "4657"; repStart "-826"; chr5 rmsk exon 57973672 57974538 1731 - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1379"; repClass "LTR"; repEnd "1984"; repFamily "ERVL"; repLeft "1095"; repStart "-3683"; chr5 rmsk exon 57974921 57975460 1731 - . gene_id "ERVLE_5q11.2d"; transcript_id "ERVLE_5q11.2d"; locus "ERVLE_5q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1379"; repClass "LTR"; repEnd "1094"; repFamily "ERVL"; repLeft "542"; repStart "-4573"; ### MER41_5q11.2c ### chr5 rmsk gene 58379117 58382765 . + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0178"; model_cov "4800"; model_pct "80.7"; chr5 rmsk exon 58379117 58379280 843 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0178"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-4184"; repStart "1585"; chr5 rmsk exon 58379282 58379402 747 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0178"; repClass "LTR"; repEnd "1790"; repFamily "ERV1"; repLeft "-4156"; repStart "1671"; chr5 rmsk exon 58379399 58379576 1023 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0178"; repClass "LTR"; repEnd "2319"; repFamily "ERV1"; repLeft "-3627"; repStart "2167"; chr5 rmsk exon 58379547 58379803 1807 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0178"; repClass "LTR"; repEnd "2848"; repFamily "ERV1"; repLeft "-3098"; repStart "2587"; chr5 rmsk exon 58379794 58382192 12227 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0178"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "1855"; chr5 rmsk exon 58382193 58382765 3673 + . gene_id "MER41_5q11.2c"; transcript_id "MER41_5q11.2c"; locus "MER41_5q11.2c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0178"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_5q11.2 ### chr5 rmsk gene 58980759 58983927 . - . gene_id "ERVL_5q11.2"; transcript_id "ERVL_5q11.2"; locus "ERVL_5q11.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0144"; model_cov "2764"; model_pct "48.0"; chr5 rmsk exon 58980759 58981220 1923 - . gene_id "ERVL_5q11.2"; transcript_id "ERVL_5q11.2"; locus "ERVL_5q11.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0144"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 58981224 58983927 15043 - . gene_id "ERVL_5q11.2"; transcript_id "ERVL_5q11.2"; locus "ERVL_5q11.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0144"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "2991"; repStart "-2"; ### HERVFRD_5q11.2 ### chr5 rmsk gene 59309872 59316129 . + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0069"; model_cov "4435"; model_pct "61.6"; chr5 rmsk exon 59309872 59310353 1543 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0069"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "-6702"; repStart "2"; chr5 rmsk exon 59310375 59311202 2304 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0069"; repClass "LTR"; repEnd "1516"; repFamily "ERV1"; repLeft "-5689"; repStart "685"; chr5 rmsk exon 59311527 59313677 3313 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0069"; repClass "LTR"; repEnd "6361"; repFamily "ERV1"; repLeft "-844"; repStart "3958"; chr5 rmsk exon 59314341 59314868 664 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0069"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "-233"; repStart "6474"; chr5 rmsk exon 59315275 59315473 966 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0069"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "-9"; repStart "6994"; chr5 rmsk exon 59315476 59316129 1774 + . gene_id "HERVFRD_5q11.2"; transcript_id "HERVFRD_5q11.2"; locus "HERVFRD_5q11.2"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0069"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### HERVL18_5q12.1 ### chr5 rmsk gene 59713242 59716428 . + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0057"; model_cov "2991"; model_pct "49.5"; chr5 rmsk exon 59713242 59713580 2092 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr5 rmsk exon 59713595 59714524 2519 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "9"; chr5 rmsk exon 59714558 59714827 1394 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2120"; chr5 rmsk exon 59714827 59715703 5451 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr5 rmsk exon 59715706 59715798 619 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr5 rmsk exon 59715857 59715958 563 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr5 rmsk exon 59716081 59716428 2402 + . gene_id "HERVL18_5q12.1"; transcript_id "HERVL18_5q12.1"; locus "HERVL18_5q12.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0057"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVW_5q12.1 ### chr5 rmsk gene 60658495 60666453 . + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0121"; model_cov "5894"; model_pct "68.3"; chr5 rmsk exon 60658495 60659284 5369 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 60659301 60659968 4939 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "684"; repFamily "ERV1"; repLeft "-7942"; repStart "17"; chr5 rmsk exon 60660180 60661518 9075 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "704"; chr5 rmsk exon 60661504 60662106 27971 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "3026"; repFamily "ERV1"; repLeft "-5600"; repStart "2430"; chr5 rmsk exon 60662400 60665384 27971 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3027"; chr5 rmsk exon 60665378 60665416 284 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr5 rmsk exon 60665407 60665700 2268 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr5 rmsk exon 60665702 60666453 4940 + . gene_id "HERVW_5q12.1"; transcript_id "HERVW_5q12.1"; locus "HERVW_5q12.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0121"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "-7"; repStart "2"; ### ERV316A3_5q12.1a ### chr5 rmsk gene 60670640 60671772 . + . gene_id "ERV316A3_5q12.1a"; transcript_id "ERV316A3_5q12.1a"; locus "ERV316A3_5q12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1026"; model_cov "779"; model_pct "14.9"; chr5 rmsk exon 60670640 60670835 660 + . gene_id "ERV316A3_5q12.1a"; transcript_id "ERV316A3_5q12.1a"; locus "ERV316A3_5q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1026"; repClass "LTR"; repEnd "4369"; repFamily "ERVL"; repLeft "-857"; repStart "4044"; chr5 rmsk exon 60670838 60671296 1748 + . gene_id "ERV316A3_5q12.1a"; transcript_id "ERV316A3_5q12.1a"; locus "ERV316A3_5q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1026"; repClass "LTR"; repEnd "5147"; repFamily "ERVL"; repLeft "-79"; repStart "4693"; chr5 rmsk exon 60671414 60671772 995 + . gene_id "ERV316A3_5q12.1a"; transcript_id "ERV316A3_5q12.1a"; locus "ERV316A3_5q12.1a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1026"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-4"; repStart "125"; ### ERV316A3_5q12.1b ### chr5 rmsk gene 61172131 61174398 . + . gene_id "ERV316A3_5q12.1b"; transcript_id "ERV316A3_5q12.1b"; locus "ERV316A3_5q12.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1027"; model_cov "1759"; model_pct "33.7"; chr5 rmsk exon 61172131 61172546 1327 + . gene_id "ERV316A3_5q12.1b"; transcript_id "ERV316A3_5q12.1b"; locus "ERV316A3_5q12.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1027"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-18"; repStart "5"; chr5 rmsk exon 61172640 61173056 866 + . gene_id "ERV316A3_5q12.1b"; transcript_id "ERV316A3_5q12.1b"; locus "ERV316A3_5q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1027"; repClass "LTR"; repEnd "594"; repFamily "ERVL"; repLeft "-4632"; repStart "109"; chr5 rmsk exon 61173080 61173215 466 + . gene_id "ERV316A3_5q12.1b"; transcript_id "ERV316A3_5q12.1b"; locus "ERV316A3_5q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1027"; repClass "LTR"; repEnd "797"; repFamily "ERVL"; repLeft "-4429"; repStart "663"; chr5 rmsk exon 61173262 61174398 4034 + . gene_id "ERV316A3_5q12.1b"; transcript_id "ERV316A3_5q12.1b"; locus "ERV316A3_5q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1027"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "-2073"; repStart "2013"; ### ERVLB4_5q12.1a ### chr5 rmsk gene 61712675 61717214 . - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0625"; model_cov "2999"; model_pct "52.5"; chr5 rmsk exon 61712675 61713124 1135 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "4703"; repFamily "ERVL"; repLeft "4225"; repStart "-1011"; chr5 rmsk exon 61713123 61713424 898 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "3870"; repFamily "ERVL"; repLeft "3358"; repStart "-1844"; chr5 rmsk exon 61713708 61714249 1160 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "3445"; repFamily "ERVL"; repLeft "2865"; repStart "-2269"; chr5 rmsk exon 61715177 61716031 2004 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "2920"; repFamily "ERVL"; repLeft "2052"; repStart "-2794"; chr5 rmsk exon 61716050 61716423 381 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "1673"; repFamily "ERVL"; repLeft "1297"; repStart "-4041"; chr5 rmsk exon 61717029 61717214 310 - . gene_id "ERVLB4_5q12.1a"; transcript_id "ERVLB4_5q12.1a"; locus "ERVLB4_5q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0625"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "420"; repStart "-5109"; ### ERV316A3_5q12.1c ### chr5 rmsk gene 61750186 61751743 . + . gene_id "ERV316A3_5q12.1c"; transcript_id "ERV316A3_5q12.1c"; locus "ERV316A3_5q12.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1028"; model_cov "616"; model_pct "11.8"; chr5 rmsk exon 61750186 61750712 1569 + . gene_id "ERV316A3_5q12.1c"; transcript_id "ERV316A3_5q12.1c"; locus "ERV316A3_5q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1028"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4545"; chr5 rmsk exon 61751140 61751224 1569 + . gene_id "ERV316A3_5q12.1c"; transcript_id "ERV316A3_5q12.1c"; locus "ERV316A3_5q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1028"; repClass "LTR"; repEnd "5162"; repFamily "ERVL"; repLeft "-64"; repStart "5085"; chr5 rmsk exon 61751350 61751743 1661 + . gene_id "ERV316A3_5q12.1c"; transcript_id "ERV316A3_5q12.1c"; locus "ERV316A3_5q12.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1028"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "37"; ### ERVLB4_5q12.1b ### chr5 rmsk gene 61771921 61773528 . - . gene_id "ERVLB4_5q12.1b"; transcript_id "ERVLB4_5q12.1b"; locus "ERVLB4_5q12.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0626"; model_cov "813"; model_pct "14.2"; chr5 rmsk exon 61771921 61772014 317 - . gene_id "ERVLB4_5q12.1b"; transcript_id "ERVLB4_5q12.1b"; locus "ERVLB4_5q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0626"; repClass "LTR"; repEnd "5351"; repFamily "ERVL"; repLeft "5254"; repStart "-363"; chr5 rmsk exon 61772805 61772844 317 - . gene_id "ERVLB4_5q12.1b"; transcript_id "ERVLB4_5q12.1b"; locus "ERVLB4_5q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0626"; repClass "LTR"; repEnd "5253"; repFamily "ERVL"; repLeft "5216"; repStart "-461"; chr5 rmsk exon 61772840 61773528 1485 - . gene_id "ERVLB4_5q12.1b"; transcript_id "ERVLB4_5q12.1b"; locus "ERVLB4_5q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0626"; repClass "LTR"; repEnd "5245"; repFamily "ERVL"; repLeft "4566"; repStart "-469"; ### ERV316A3_5q12.1d ### chr5 rmsk gene 61886661 61887929 . - . gene_id "ERV316A3_5q12.1d"; transcript_id "ERV316A3_5q12.1d"; locus "ERV316A3_5q12.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1029"; model_cov "836"; model_pct "16.0"; chr5 rmsk exon 61886661 61887069 1204 - . gene_id "ERV316A3_5q12.1d"; transcript_id "ERV316A3_5q12.1d"; locus "ERV316A3_5q12.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1029"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr5 rmsk exon 61887133 61887929 1548 - . gene_id "ERV316A3_5q12.1d"; transcript_id "ERV316A3_5q12.1d"; locus "ERV316A3_5q12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1029"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "4327"; repStart "-63"; ### HERVL_5q12.1a ### chr5 rmsk gene 61908053 61913030 . - . gene_id "HERVL_5q12.1a"; transcript_id "HERVL_5q12.1a"; locus "HERVL_5q12.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0515"; model_cov "4483"; model_pct "79.3"; chr5 rmsk exon 61908053 61908114 278 - . gene_id "HERVL_5q12.1a"; transcript_id "HERVL_5q12.1a"; locus "HERVL_5q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0515"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "361"; repStart "0"; chr5 rmsk exon 61908183 61908555 2406 - . gene_id "HERVL_5q12.1a"; transcript_id "HERVL_5q12.1a"; locus "HERVL_5q12.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0515"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "1"; repStart "-61"; chr5 rmsk exon 61908556 61913030 33795 - . gene_id "HERVL_5q12.1a"; transcript_id "HERVL_5q12.1a"; locus "HERVL_5q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0515"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1171"; repStart "0"; ### MER61_5q12.1 ### chr5 rmsk gene 61913033 61916159 . + . gene_id "MER61_5q12.1"; transcript_id "MER61_5q12.1"; locus "MER61_5q12.1"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0155"; model_cov "2841"; model_pct "54.5"; chr5 rmsk exon 61913033 61915895 18586 + . gene_id "MER61_5q12.1"; transcript_id "MER61_5q12.1"; locus "MER61_5q12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0155"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2376"; chr5 rmsk exon 61915896 61916159 1313 + . gene_id "MER61_5q12.1"; transcript_id "MER61_5q12.1"; locus "MER61_5q12.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0155"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_5q12.1c ### chr5 rmsk gene 61962801 61965211 . + . gene_id "ERVLB4_5q12.1c"; transcript_id "ERVLB4_5q12.1c"; locus "ERVLB4_5q12.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0627"; model_cov "2528"; model_pct "44.2"; chr5 rmsk exon 61962801 61965098 4118 + . gene_id "ERVLB4_5q12.1c"; transcript_id "ERVLB4_5q12.1c"; locus "ERVLB4_5q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0627"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "-3256"; repStart "4"; chr5 rmsk exon 61965137 61965211 278 + . gene_id "ERVLB4_5q12.1c"; transcript_id "ERVLB4_5q12.1c"; locus "ERVLB4_5q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0627"; repClass "LTR"; repEnd "2514"; repFamily "ERVL"; repLeft "-3200"; repStart "2440"; ### ERV316A3_5q12.1e ### chr5 rmsk gene 62100486 62101691 . + . gene_id "ERV316A3_5q12.1e"; transcript_id "ERV316A3_5q12.1e"; locus "ERV316A3_5q12.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1031"; model_cov "796"; model_pct "15.2"; chr5 rmsk exon 62100486 62100660 503 + . gene_id "ERV316A3_5q12.1e"; transcript_id "ERV316A3_5q12.1e"; locus "ERV316A3_5q12.1e"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1031"; repClass "LTR"; repEnd "206"; repFamily "ERVL"; repLeft "-332"; repStart "1"; chr5 rmsk exon 62100711 62100933 991 + . gene_id "ERV316A3_5q12.1e"; transcript_id "ERV316A3_5q12.1e"; locus "ERV316A3_5q12.1e"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1031"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "-14"; repStart "302"; chr5 rmsk exon 62101025 62101691 464 + . gene_id "ERV316A3_5q12.1e"; transcript_id "ERV316A3_5q12.1e"; locus "ERV316A3_5q12.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1031"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "-4833"; repStart "-403"; ### HERVL_5q12.1b ### chr5 rmsk gene 62102349 62108693 . + . gene_id "HERVL_5q12.1b"; transcript_id "HERVL_5q12.1b"; locus "HERVL_5q12.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0516"; model_cov "5652"; model_pct "100.0"; chr5 rmsk exon 62102349 62102475 44849 + . gene_id "HERVL_5q12.1b"; transcript_id "HERVL_5q12.1b"; locus "HERVL_5q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0516"; repClass "LTR"; repEnd "127"; repFamily "ERVL"; repLeft "-5527"; repStart "1"; chr5 rmsk exon 62102783 62108274 44849 + . gene_id "HERVL_5q12.1b"; transcript_id "HERVL_5q12.1b"; locus "HERVL_5q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0516"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "128"; chr5 rmsk exon 62108275 62108693 3089 + . gene_id "HERVL_5q12.1b"; transcript_id "HERVL_5q12.1b"; locus "HERVL_5q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0516"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_5q12.1f ### chr5 rmsk gene 62108696 62110771 . + . gene_id "ERV316A3_5q12.1f"; transcript_id "ERV316A3_5q12.1f"; locus "ERV316A3_5q12.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1032"; model_cov "1220"; model_pct "23.3"; chr5 rmsk exon 62108696 62109099 1079 + . gene_id "ERV316A3_5q12.1f"; transcript_id "ERV316A3_5q12.1f"; locus "ERV316A3_5q12.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1032"; repClass "LTR"; repEnd "1838"; repFamily "ERVL"; repLeft "-3388"; repStart "1247"; chr5 rmsk exon 62110141 62110771 1783 + . gene_id "ERV316A3_5q12.1f"; transcript_id "ERV316A3_5q12.1f"; locus "ERV316A3_5q12.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1032"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "-107"; repStart "4490"; ### HERVL_5q12.1c ### chr5 rmsk gene 62960806 62961775 . - . gene_id "HERVL_5q12.1c"; transcript_id "HERVL_5q12.1c"; locus "HERVL_5q12.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0518"; model_cov "607"; model_pct "10.7"; chr5 rmsk exon 62960806 62961163 1227 - . gene_id "HERVL_5q12.1c"; transcript_id "HERVL_5q12.1c"; locus "HERVL_5q12.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0518"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "207"; repStart "0"; chr5 rmsk exon 62961164 62961775 4349 - . gene_id "HERVL_5q12.1c"; transcript_id "HERVL_5q12.1c"; locus "HERVL_5q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0518"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "1"; repStart "-5046"; ### ERVLB4_5q12.2a ### chr5 rmsk gene 63647667 63648310 . - . gene_id "ERVLB4_5q12.2a"; transcript_id "ERVLB4_5q12.2a"; locus "ERVLB4_5q12.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0629"; model_cov "640"; model_pct "11.2"; chr5 rmsk exon 63647667 63648132 614 - . gene_id "ERVLB4_5q12.2a"; transcript_id "ERVLB4_5q12.2a"; locus "ERVLB4_5q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0629"; repClass "LTR"; repEnd "3647"; repFamily "ERVL"; repLeft "3167"; repStart "-2067"; chr5 rmsk exon 63648163 63648220 253 - . gene_id "ERVLB4_5q12.2a"; transcript_id "ERVLB4_5q12.2a"; locus "ERVLB4_5q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0629"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "3023"; repStart "-2634"; chr5 rmsk exon 63648204 63648310 347 - . gene_id "ERVLB4_5q12.2a"; transcript_id "ERVLB4_5q12.2a"; locus "ERVLB4_5q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0629"; repClass "LTR"; repEnd "2217"; repFamily "ERVL"; repLeft "2114"; repStart "-3497"; ### ERVLB4_5q12.2b ### chr5 rmsk gene 63648391 63649301 . - . gene_id "ERVLB4_5q12.2b"; transcript_id "ERVLB4_5q12.2b"; locus "ERVLB4_5q12.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0630"; model_cov "1048"; model_pct "18.3"; chr5 rmsk exon 63648391 63649301 573 - . gene_id "ERVLB4_5q12.2b"; transcript_id "ERVLB4_5q12.2b"; locus "ERVLB4_5q12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0630"; repClass "LTR"; repEnd "2717"; repFamily "ERVL"; repLeft "1669"; repStart "-2997"; ### PABLB_5q12.2 ### chr5 rmsk gene 63685995 63690879 . - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0032"; model_cov "3838"; model_pct "53.9"; chr5 rmsk exon 63685995 63686231 905 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "422"; repStart "0"; chr5 rmsk exon 63686248 63686400 357 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "1"; repStart "-518"; chr5 rmsk exon 63686509 63686791 1124 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "7058"; repFamily "ERV1"; repLeft "6763"; repStart "-64"; chr5 rmsk exon 63686795 63687636 3626 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "5773"; repFamily "ERV1"; repLeft "4926"; repStart "-1349"; chr5 rmsk exon 63687633 63688889 6549 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "4061"; repFamily "ERV1"; repLeft "2790"; repStart "-3061"; chr5 rmsk exon 63689188 63689298 6549 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "2691"; repStart "-4333"; chr5 rmsk exon 63689298 63690444 1441 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "1369"; repFamily "ERV1"; repLeft "42"; repStart "-5753"; chr5 rmsk exon 63690468 63690725 1019 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "414"; repStart "0"; chr5 rmsk exon 63690727 63690879 346 - . gene_id "PABLB_5q12.2"; transcript_id "PABLB_5q12.2"; locus "PABLB_5q12.2"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0032"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "1"; repStart "-518"; ### ERV316A3_5q12.3a ### chr5 rmsk gene 64096805 64099692 . - . gene_id "ERV316A3_5q12.3a"; transcript_id "ERV316A3_5q12.3a"; locus "ERV316A3_5q12.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1033"; model_cov "2319"; model_pct "44.4"; chr5 rmsk exon 64096805 64098283 2043 - . gene_id "ERV316A3_5q12.3a"; transcript_id "ERV316A3_5q12.3a"; locus "ERV316A3_5q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1033"; repClass "LTR"; repEnd "3829"; repFamily "ERVL"; repLeft "2341"; repStart "-1397"; chr5 rmsk exon 64098277 64099053 1460 - . gene_id "ERV316A3_5q12.3a"; transcript_id "ERV316A3_5q12.3a"; locus "ERV316A3_5q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1033"; repClass "LTR"; repEnd "1965"; repFamily "ERVL"; repLeft "1134"; repStart "-3261"; chr5 rmsk exon 64099411 64099692 526 - . gene_id "ERV316A3_5q12.3a"; transcript_id "ERV316A3_5q12.3a"; locus "ERV316A3_5q12.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1033"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "1"; repStart "-195"; ### ERVLE_5q12.3a ### chr5 rmsk gene 64374699 64377488 . + . gene_id "ERVLE_5q12.3a"; transcript_id "ERVLE_5q12.3a"; locus "ERVLE_5q12.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1382"; model_cov "2964"; model_pct "52.3"; chr5 rmsk exon 64374699 64377422 11486 + . gene_id "ERVLE_5q12.3a"; transcript_id "ERVLE_5q12.3a"; locus "ERVLE_5q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1382"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-3"; repStart "2700"; chr5 rmsk exon 64377425 64377488 393 + . gene_id "ERVLE_5q12.3a"; transcript_id "ERVLE_5q12.3a"; locus "ERVLE_5q12.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1382"; repClass "LTR"; repEnd "64"; repFamily "ERVL"; repLeft "-599"; repStart "1"; ### ERVLB4_5q12.3a ### chr5 rmsk gene 64377489 64381250 . - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0631"; model_cov "1831"; model_pct "32.0"; chr5 rmsk exon 64377489 64377825 1233 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "1894"; repFamily "ERVL"; repLeft "1544"; repStart "-3820"; chr5 rmsk exon 64377998 64378725 3231 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "1560"; repFamily "ERVL"; repLeft "788"; repStart "-4154"; chr5 rmsk exon 64379474 64379527 3231 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "787"; repFamily "ERVL"; repLeft "734"; repStart "-4927"; chr5 rmsk exon 64379638 64380040 1403 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "17"; repStart "-67"; chr5 rmsk exon 64380043 64380656 1860 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "692"; repFamily "ERVL"; repLeft "36"; repStart "-5022"; chr5 rmsk exon 64380719 64380762 255 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "347"; repStart "-7"; chr5 rmsk exon 64380804 64381085 641 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "44"; repStart "-65"; chr5 rmsk exon 64381104 64381250 424 - . gene_id "ERVLB4_5q12.3a"; transcript_id "ERVLB4_5q12.3a"; locus "ERVLB4_5q12.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0631"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "1"; repStart "-517"; ### HUERSP1_5q12.3 ### chr5 rmsk gene 64440642 64445853 . + . gene_id "HUERSP1_5q12.3"; transcript_id "HUERSP1_5q12.3"; locus "HUERSP1_5q12.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0072"; model_cov "4962"; model_pct "79.2"; chr5 rmsk exon 64440642 64440750 849 + . gene_id "HUERSP1_5q12.3"; transcript_id "HUERSP1_5q12.3"; locus "HUERSP1_5q12.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0072"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-36"; repStart "547"; chr5 rmsk exon 64440752 64442946 10977 + . gene_id "HUERSP1_5q12.3"; transcript_id "HUERSP1_5q12.3"; locus "HUERSP1_5q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0072"; repClass "LTR"; repEnd "2350"; repFamily "ERV1"; repLeft "-3913"; repStart "59"; chr5 rmsk exon 64442945 64445235 7669 + . gene_id "HUERSP1_5q12.3"; transcript_id "HUERSP1_5q12.3"; locus "HUERSP1_5q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0072"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "3592"; chr5 rmsk exon 64445237 64445853 3811 + . gene_id "HUERSP1_5q12.3"; transcript_id "HUERSP1_5q12.3"; locus "HUERSP1_5q12.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0072"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### ERV316A3_5q12.3b ### chr5 rmsk gene 64617128 64617852 . - . gene_id "ERV316A3_5q12.3b"; transcript_id "ERV316A3_5q12.3b"; locus "ERV316A3_5q12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1034"; model_cov "676"; model_pct "12.9"; chr5 rmsk exon 64617128 64617210 266 - . gene_id "ERV316A3_5q12.3b"; transcript_id "ERV316A3_5q12.3b"; locus "ERV316A3_5q12.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1034"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "1"; repStart "-370"; chr5 rmsk exon 64617212 64617852 1304 - . gene_id "ERV316A3_5q12.3b"; transcript_id "ERV316A3_5q12.3b"; locus "ERV316A3_5q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1034"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4549"; repStart "-1"; ### ERVLE_5q12.3b ### chr5 rmsk gene 64617853 64619221 . - . gene_id "ERVLE_5q12.3b"; transcript_id "ERVLE_5q12.3b"; locus "ERVLE_5q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1383"; model_cov "712"; model_pct "12.6"; chr5 rmsk exon 64617853 64617982 391 - . gene_id "ERVLE_5q12.3b"; transcript_id "ERVLE_5q12.3b"; locus "ERVLE_5q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1383"; repClass "LTR"; repEnd "4708"; repFamily "ERVL"; repLeft "4576"; repStart "-959"; chr5 rmsk exon 64618239 64618371 468 - . gene_id "ERVLE_5q12.3b"; transcript_id "ERVLE_5q12.3b"; locus "ERVLE_5q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1383"; repClass "LTR"; repEnd "4240"; repFamily "ERVL"; repLeft "4107"; repStart "-1427"; chr5 rmsk exon 64618888 64618928 468 - . gene_id "ERVLE_5q12.3b"; transcript_id "ERVLE_5q12.3b"; locus "ERVLE_5q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1383"; repClass "LTR"; repEnd "4106"; repFamily "ERVL"; repLeft "4067"; repStart "-1561"; chr5 rmsk exon 64618926 64619221 777 - . gene_id "ERVLE_5q12.3b"; transcript_id "ERVLE_5q12.3b"; locus "ERVLE_5q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1383"; repClass "LTR"; repEnd "3243"; repFamily "ERVL"; repLeft "2835"; repStart "-2424"; ### MER4_5q12.3a ### chr5 rmsk gene 64705696 64708622 . - . gene_id "MER4_5q12.3a"; transcript_id "MER4_5q12.3a"; locus "MER4_5q12.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0288"; model_cov "2175"; model_pct "33.0"; chr5 rmsk exon 64705696 64705876 2485 - . gene_id "MER4_5q12.3a"; transcript_id "MER4_5q12.3a"; locus "MER4_5q12.3a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0288"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "492"; repStart "0"; chr5 rmsk exon 64706175 64706499 2485 - . gene_id "MER4_5q12.3a"; transcript_id "MER4_5q12.3a"; locus "MER4_5q12.3a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0288"; repClass "LTR"; repEnd "491"; repFamily "ERV1"; repLeft "1"; repStart "-173"; chr5 rmsk exon 64706507 64708622 11108 - . gene_id "MER4_5q12.3a"; transcript_id "MER4_5q12.3a"; locus "MER4_5q12.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0288"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4421"; repStart "-2"; ### ERV316A3_5q12.3c ### chr5 rmsk gene 65120559 65123334 . + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1036"; model_cov "2332"; model_pct "44.6"; chr5 rmsk exon 65120559 65120718 689 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "-4202"; repStart "860"; chr5 rmsk exon 65120960 65121366 1671 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "2248"; repFamily "ERVL"; repLeft "-2978"; repStart "1842"; chr5 rmsk exon 65121743 65121997 1671 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "2541"; repFamily "ERVL"; repLeft "-2685"; repStart "2249"; chr5 rmsk exon 65121983 65122119 439 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "2942"; repFamily "ERVL"; repLeft "-2284"; repStart "2787"; chr5 rmsk exon 65122156 65122650 1708 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "3829"; repFamily "ERVL"; repLeft "-1397"; repStart "3320"; chr5 rmsk exon 65122667 65123334 2097 + . gene_id "ERV316A3_5q12.3c"; transcript_id "ERV316A3_5q12.3c"; locus "ERV316A3_5q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1036"; repClass "LTR"; repEnd "4269"; repFamily "ERVL"; repLeft "-957"; repStart "3463"; ### HARLEQUIN_5q12.3 ### chr5 rmsk gene 65174180 65179688 . + . gene_id "HARLEQUIN_5q12.3"; transcript_id "HARLEQUIN_5q12.3"; locus "HARLEQUIN_5q12.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0072"; model_cov "5399"; model_pct "78.3"; chr5 rmsk exon 65174180 65174289 874 + . gene_id "HARLEQUIN_5q12.3"; transcript_id "HARLEQUIN_5q12.3"; locus "HARLEQUIN_5q12.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0072"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "354"; chr5 rmsk exon 65174290 65179688 43001 + . gene_id "HARLEQUIN_5q12.3"; transcript_id "HARLEQUIN_5q12.3"; locus "HARLEQUIN_5q12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0072"; repClass "LTR"; repEnd "5400"; repFamily "ERV1"; repLeft "-1496"; repStart "1"; ### HERVL_5q12.3 ### chr5 rmsk gene 65486807 65491213 . - . gene_id "HERVL_5q12.3"; transcript_id "HERVL_5q12.3"; locus "HERVL_5q12.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0519"; model_cov "3870"; model_pct "68.4"; chr5 rmsk exon 65486807 65487352 2229 - . gene_id "HERVL_5q12.3"; transcript_id "HERVL_5q12.3"; locus "HERVL_5q12.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0519"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-98"; repStart "0"; chr5 rmsk exon 65487355 65491213 28178 - . gene_id "HERVL_5q12.3"; transcript_id "HERVL_5q12.3"; locus "HERVL_5q12.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0519"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1784"; repStart "0"; ### ERV316A3_5q12.3d ### chr5 rmsk gene 65886720 65888891 . - . gene_id "ERV316A3_5q12.3d"; transcript_id "ERV316A3_5q12.3d"; locus "ERV316A3_5q12.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1037"; model_cov "1417"; model_pct "27.1"; chr5 rmsk exon 65886720 65887123 1524 - . gene_id "ERV316A3_5q12.3d"; transcript_id "ERV316A3_5q12.3d"; locus "ERV316A3_5q12.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1037"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr5 rmsk exon 65887167 65888026 5552 - . gene_id "ERV316A3_5q12.3d"; transcript_id "ERV316A3_5q12.3d"; locus "ERV316A3_5q12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1037"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "4286"; repStart "-74"; chr5 rmsk exon 65888350 65888891 4903 - . gene_id "ERV316A3_5q12.3d"; transcript_id "ERV316A3_5q12.3d"; locus "ERV316A3_5q12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1037"; repClass "LTR"; repEnd "4285"; repFamily "ERVL"; repLeft "3734"; repStart "-941"; ### HERVL40_5q12.3 ### chr5 rmsk gene 66091510 66092988 . + . gene_id "HERVL40_5q12.3"; transcript_id "HERVL40_5q12.3"; locus "HERVL40_5q12.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0155"; model_cov "786"; model_pct "14.2"; chr5 rmsk exon 66091510 66092024 2111 + . gene_id "HERVL40_5q12.3"; transcript_id "HERVL40_5q12.3"; locus "HERVL40_5q12.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0155"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 66092027 66092128 294 + . gene_id "HERVL40_5q12.3"; transcript_id "HERVL40_5q12.3"; locus "HERVL40_5q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0155"; repClass "LTR"; repEnd "106"; repFamily "ERVL"; repLeft "-5424"; repStart "1"; chr5 rmsk exon 66092282 66092789 1641 + . gene_id "HERVL40_5q12.3"; transcript_id "HERVL40_5q12.3"; locus "HERVL40_5q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0155"; repClass "LTR"; repEnd "2622"; repFamily "ERVL"; repLeft "-2908"; repStart "2124"; chr5 rmsk exon 66092827 66092988 540 + . gene_id "HERVL40_5q12.3"; transcript_id "HERVL40_5q12.3"; locus "HERVL40_5q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0155"; repClass "LTR"; repEnd "2869"; repFamily "ERVL"; repLeft "-2661"; repStart "2686"; ### ERVLE_5q12.3c ### chr5 rmsk gene 66416814 66418774 . - . gene_id "ERVLE_5q12.3c"; transcript_id "ERVLE_5q12.3c"; locus "ERVLE_5q12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1385"; model_cov "1621"; model_pct "28.6"; chr5 rmsk exon 66416814 66417156 1087 - . gene_id "ERVLE_5q12.3c"; transcript_id "ERVLE_5q12.3c"; locus "ERVLE_5q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1385"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4941"; repStart "-374"; chr5 rmsk exon 66417261 66417665 845 - . gene_id "ERVLE_5q12.3c"; transcript_id "ERVLE_5q12.3c"; locus "ERVLE_5q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1385"; repClass "LTR"; repEnd "5038"; repFamily "ERVL"; repLeft "4639"; repStart "-629"; chr5 rmsk exon 66417674 66418452 1283 - . gene_id "ERVLE_5q12.3c"; transcript_id "ERVLE_5q12.3c"; locus "ERVLE_5q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1385"; repClass "LTR"; repEnd "1145"; repFamily "ERVL"; repLeft "366"; repStart "-4522"; chr5 rmsk exon 66418682 66418774 313 - . gene_id "ERVLE_5q12.3c"; transcript_id "ERVLE_5q12.3c"; locus "ERVLE_5q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1385"; repClass "LTR"; repEnd "226"; repFamily "ERVL"; repLeft "135"; repStart "-5441"; ### MER4_5q12.3b ### chr5 rmsk gene 66465762 66470705 . - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0289"; model_cov "3691"; model_pct "55.9"; chr5 rmsk exon 66465762 66466232 3414 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0289"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 66466245 66466534 15254 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0289"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6298"; repStart "-5"; chr5 rmsk exon 66466838 66469187 15254 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0289"; repClass "LTR"; repEnd "6297"; repFamily "ERV1"; repLeft "3843"; repStart "-301"; chr5 rmsk exon 66469192 66469353 3400 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0289"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3505"; repStart "-2917"; chr5 rmsk exon 66469663 66470265 3400 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0289"; repClass "LTR"; repEnd "3504"; repFamily "ERV1"; repLeft "2875"; repStart "-3094"; chr5 rmsk exon 66470555 66470705 3400 - . gene_id "MER4_5q12.3b"; transcript_id "MER4_5q12.3b"; locus "MER4_5q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0289"; repClass "LTR"; repEnd "2874"; repFamily "ERV1"; repLeft "2737"; repStart "-3724"; ### MER4_5q12.3c ### chr5 rmsk gene 66470947 66474000 . - . gene_id "MER4_5q12.3c"; transcript_id "MER4_5q12.3c"; locus "MER4_5q12.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0290"; model_cov "1096"; model_pct "16.6"; chr5 rmsk exon 66470947 66471667 3035 - . gene_id "MER4_5q12.3c"; transcript_id "MER4_5q12.3c"; locus "MER4_5q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0290"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "2530"; repStart "-3366"; chr5 rmsk exon 66472680 66472985 1245 - . gene_id "MER4_5q12.3c"; transcript_id "MER4_5q12.3c"; locus "MER4_5q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0290"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "2112"; repStart "-4171"; chr5 rmsk exon 66473056 66473139 281 - . gene_id "MER4_5q12.3c"; transcript_id "MER4_5q12.3c"; locus "MER4_5q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0290"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-722"; repStart "-7241"; chr5 rmsk exon 66473658 66474000 3443 - . gene_id "MER4_5q12.3c"; transcript_id "MER4_5q12.3c"; locus "MER4_5q12.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0290"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "129"; repStart "0"; ### MER4B_5q12.3 ### chr5 rmsk gene 66471715 66472620 . - . gene_id "MER4B_5q12.3"; transcript_id "MER4B_5q12.3"; locus "MER4B_5q12.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0169"; model_cov "952"; model_pct "14.1"; chr5 rmsk exon 66471715 66472620 5515 - . gene_id "MER4B_5q12.3"; transcript_id "MER4B_5q12.3"; locus "MER4B_5q12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0169"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "194"; repStart "-5612"; ### ERVLB4_5q12.3b ### chr5 rmsk gene 66505357 66507400 . - . gene_id "ERVLB4_5q12.3b"; transcript_id "ERVLB4_5q12.3b"; locus "ERVLB4_5q12.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0633"; model_cov "1358"; model_pct "23.8"; chr5 rmsk exon 66505357 66505771 1786 - . gene_id "ERVLB4_5q12.3b"; transcript_id "ERVLB4_5q12.3b"; locus "ERVLB4_5q12.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0633"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "3"; repStart "-5"; chr5 rmsk exon 66505774 66505886 6775 - . gene_id "ERVLB4_5q12.3b"; transcript_id "ERVLB4_5q12.3b"; locus "ERVLB4_5q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0633"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5616"; repStart "0"; chr5 rmsk exon 66506173 66507400 6775 - . gene_id "ERVLB4_5q12.3b"; transcript_id "ERVLB4_5q12.3b"; locus "ERVLB4_5q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0633"; repClass "LTR"; repEnd "5615"; repFamily "ERVL"; repLeft "4355"; repStart "-99"; ### ERV316A3_5q12.3e ### chr5 rmsk gene 67374999 67376628 . + . gene_id "ERV316A3_5q12.3e"; transcript_id "ERV316A3_5q12.3e"; locus "ERV316A3_5q12.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1038"; model_cov "1070"; model_pct "20.5"; chr5 rmsk exon 67374999 67376069 3252 + . gene_id "ERV316A3_5q12.3e"; transcript_id "ERV316A3_5q12.3e"; locus "ERV316A3_5q12.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1038"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "-141"; repStart "4015"; chr5 rmsk exon 67376158 67376628 1773 + . gene_id "ERV316A3_5q12.3e"; transcript_id "ERV316A3_5q12.3e"; locus "ERV316A3_5q12.3e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1038"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_5q13.1 ### chr5 rmsk gene 67579646 67581628 . + . gene_id "ERVLB4_5q13.1"; transcript_id "ERVLB4_5q13.1"; locus "ERVLB4_5q13.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0634"; model_cov "1337"; model_pct "23.4"; chr5 rmsk exon 67579646 67580132 1245 + . gene_id "ERVLB4_5q13.1"; transcript_id "ERVLB4_5q13.1"; locus "ERVLB4_5q13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0634"; repClass "LTR"; repEnd "2535"; repFamily "ERVL"; repLeft "-3179"; repStart "2041"; chr5 rmsk exon 67580154 67580486 439 + . gene_id "ERVLB4_5q13.1"; transcript_id "ERVLB4_5q13.1"; locus "ERVLB4_5q13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0634"; repClass "LTR"; repEnd "4569"; repFamily "ERVL"; repLeft "-1145"; repStart "4168"; chr5 rmsk exon 67581177 67581628 658 + . gene_id "ERVLB4_5q13.1"; transcript_id "ERVLB4_5q13.1"; locus "ERVLB4_5q13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0634"; repClass "LTR"; repEnd "5617"; repFamily "ERVL"; repLeft "-97"; repStart "5175"; ### ERV316A3_5q13.1 ### chr5 rmsk gene 67672538 67674659 . - . gene_id "ERV316A3_5q13.1"; transcript_id "ERV316A3_5q13.1"; locus "ERV316A3_5q13.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1039"; model_cov "1895"; model_pct "36.3"; chr5 rmsk exon 67672538 67673716 2059 - . gene_id "ERV316A3_5q13.1"; transcript_id "ERV316A3_5q13.1"; locus "ERV316A3_5q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1039"; repClass "LTR"; repEnd "3742"; repFamily "ERVL"; repLeft "2590"; repStart "-1484"; chr5 rmsk exon 67673962 67674659 1749 - . gene_id "ERV316A3_5q13.1"; transcript_id "ERV316A3_5q13.1"; locus "ERV316A3_5q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1039"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "1745"; repStart "-2738"; ### HERVL18_5q13.1 ### chr5 rmsk gene 68930005 68933114 . - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0058"; model_cov "2561"; model_pct "42.4"; chr5 rmsk exon 68930005 68930396 2141 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 68930403 68930491 486 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "6037"; repFamily "ERVL"; repLeft "5946"; repStart "-10"; chr5 rmsk exon 68930492 68930550 326 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "5209"; repStart "-780"; chr5 rmsk exon 68930551 68930644 578 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr5 rmsk exon 68930647 68931255 3879 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2952"; repStart "-2468"; chr5 rmsk exon 68931256 68931616 2134 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2718"; repStart "-2963"; chr5 rmsk exon 68931614 68931870 1308 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr5 rmsk exon 68931870 68931907 304 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1773"; repStart "-4237"; chr5 rmsk exon 68931930 68932394 1765 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "1149"; repStart "-4346"; chr5 rmsk exon 68932389 68932789 2033 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "95"; repStart "-5549"; chr5 rmsk exon 68932814 68933114 1405 - . gene_id "HERVL18_5q13.1"; transcript_id "HERVL18_5q13.1"; locus "HERVL18_5q13.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0058"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVEA_5q13.1 ### chr5 rmsk gene 69087915 69089974 . - . gene_id "HERVEA_5q13.1"; transcript_id "HERVEA_5q13.1"; locus "HERVEA_5q13.1"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0035"; model_cov "2080"; model_pct "26.5"; chr5 rmsk exon 69087915 69088268 3603 - . gene_id "HERVEA_5q13.1"; transcript_id "HERVEA_5q13.1"; locus "HERVEA_5q13.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0035"; repClass "LTR"; repEnd "360"; repFamily "ERV1"; repLeft "1"; repStart "-103"; chr5 rmsk exon 69088275 69089974 10378 - . gene_id "HERVEA_5q13.1"; transcript_id "HERVEA_5q13.1"; locus "HERVEA_5q13.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0035"; repClass "LTR"; repEnd "7672"; repFamily "ERV1"; repLeft "5592"; repStart "-175"; ### HML6_5q13.2a ### chr5 rmsk gene 69765658 69767605 . + . gene_id "HML6_5q13.2a"; transcript_id "HML6_5q13.2a"; locus "HML6_5q13.2a"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0026"; model_cov "1206"; model_pct "16.7"; chr5 rmsk exon 69765658 69765692 258 + . gene_id "HML6_5q13.2a"; transcript_id "HML6_5q13.2a"; locus "HML6_5q13.2a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0026"; repClass "LTR"; repEnd "181"; repFamily "ERVK"; repLeft "-7021"; repStart "147"; chr5 rmsk exon 69765777 69765977 579 + . gene_id "HML6_5q13.2a"; transcript_id "HML6_5q13.2a"; locus "HML6_5q13.2a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0026"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr5 rmsk exon 69766120 69767470 4524 + . gene_id "HML6_5q13.2a"; transcript_id "HML6_5q13.2a"; locus "HML6_5q13.2a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0026"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; chr5 rmsk exon 69767471 69767605 715 + . gene_id "HML6_5q13.2a"; transcript_id "HML6_5q13.2a"; locus "HML6_5q13.2a"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0026"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "-46"; repStart "317"; ### LTR23_5q13.2a ### chr5 rmsk gene 69811332 69813147 . + . gene_id "LTR23_5q13.2a"; transcript_id "LTR23_5q13.2a"; locus "LTR23_5q13.2a"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0033"; model_cov "1682"; model_pct "32.8"; chr5 rmsk exon 69811332 69813147 1312 + . gene_id "LTR23_5q13.2a"; transcript_id "LTR23_5q13.2a"; locus "LTR23_5q13.2a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0033"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "-2550"; repStart "891"; ### HML6_5q13.2b ### chr5 rmsk gene 70345506 70347452 . + . gene_id "HML6_5q13.2b"; transcript_id "HML6_5q13.2b"; locus "HML6_5q13.2b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0029"; model_cov "1240"; model_pct "17.2"; chr5 rmsk exon 70345506 70345560 264 + . gene_id "HML6_5q13.2b"; transcript_id "HML6_5q13.2b"; locus "HML6_5q13.2b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0029"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "-7024"; repStart "110"; chr5 rmsk exon 70345625 70345825 571 + . gene_id "HML6_5q13.2b"; transcript_id "HML6_5q13.2b"; locus "HML6_5q13.2b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0029"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr5 rmsk exon 70345968 70347317 4586 + . gene_id "HML6_5q13.2b"; transcript_id "HML6_5q13.2b"; locus "HML6_5q13.2b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0029"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; chr5 rmsk exon 70347318 70347452 711 + . gene_id "HML6_5q13.2b"; transcript_id "HML6_5q13.2b"; locus "HML6_5q13.2b"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0029"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "-46"; repStart "317"; ### LTR23_5q13.2b ### chr5 rmsk gene 70617430 70619245 . - . gene_id "LTR23_5q13.2b"; transcript_id "LTR23_5q13.2b"; locus "LTR23_5q13.2b"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0034"; model_cov "1682"; model_pct "32.8"; chr5 rmsk exon 70617430 70619245 1168 - . gene_id "LTR23_5q13.2b"; transcript_id "LTR23_5q13.2b"; locus "LTR23_5q13.2b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0034"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "891"; repStart "-2550"; ### HML6_5q13.2c ### chr5 rmsk gene 70662608 70664554 . - . gene_id "HML6_5q13.2c"; transcript_id "HML6_5q13.2c"; locus "HML6_5q13.2c"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0034"; model_cov "1240"; model_pct "17.2"; chr5 rmsk exon 70662608 70662742 715 - . gene_id "HML6_5q13.2c"; transcript_id "HML6_5q13.2c"; locus "HML6_5q13.2c"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0034"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "317"; repStart "-46"; chr5 rmsk exon 70662743 70664092 4590 - . gene_id "HML6_5q13.2c"; transcript_id "HML6_5q13.2c"; locus "HML6_5q13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0034"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "1280"; repStart "-4967"; chr5 rmsk exon 70664235 70664435 577 - . gene_id "HML6_5q13.2c"; transcript_id "HML6_5q13.2c"; locus "HML6_5q13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0034"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "15"; repStart "-6970"; chr5 rmsk exon 70664500 70664554 267 - . gene_id "HML6_5q13.2c"; transcript_id "HML6_5q13.2c"; locus "HML6_5q13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0034"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "110"; repStart "-7024"; ### LTR23_5q13.2c ### chr5 rmsk gene 70686226 70688040 . + . gene_id "LTR23_5q13.2c"; transcript_id "LTR23_5q13.2c"; locus "LTR23_5q13.2c"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0035"; model_cov "1682"; model_pct "32.8"; chr5 rmsk exon 70686226 70688040 1322 + . gene_id "LTR23_5q13.2c"; transcript_id "LTR23_5q13.2c"; locus "LTR23_5q13.2c"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0035"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "-2550"; repStart "891"; ### HML6_5q13.2d ### chr5 rmsk gene 71344935 71346881 . + . gene_id "HML6_5q13.2d"; transcript_id "HML6_5q13.2d"; locus "HML6_5q13.2d"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0035"; model_cov "1240"; model_pct "17.2"; chr5 rmsk exon 71344935 71344989 267 + . gene_id "HML6_5q13.2d"; transcript_id "HML6_5q13.2d"; locus "HML6_5q13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0035"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "-7024"; repStart "110"; chr5 rmsk exon 71345054 71345254 596 + . gene_id "HML6_5q13.2d"; transcript_id "HML6_5q13.2d"; locus "HML6_5q13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0035"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr5 rmsk exon 71345397 71346746 4558 + . gene_id "HML6_5q13.2d"; transcript_id "HML6_5q13.2d"; locus "HML6_5q13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0035"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; chr5 rmsk exon 71346747 71346881 715 + . gene_id "HML6_5q13.2d"; transcript_id "HML6_5q13.2d"; locus "HML6_5q13.2d"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0035"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "-46"; repStart "317"; ### ERVLE_5q13.2a ### chr5 rmsk gene 71568176 71570697 . - . gene_id "ERVLE_5q13.2a"; transcript_id "ERVLE_5q13.2a"; locus "ERVLE_5q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1391"; model_cov "1259"; model_pct "22.2"; chr5 rmsk exon 71568176 71568291 252 - . gene_id "ERVLE_5q13.2a"; transcript_id "ERVLE_5q13.2a"; locus "ERVLE_5q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1391"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "3090"; repStart "-2456"; chr5 rmsk exon 71568642 71569071 791 - . gene_id "ERVLE_5q13.2a"; transcript_id "ERVLE_5q13.2a"; locus "ERVLE_5q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1391"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "2456"; repStart "-2768"; chr5 rmsk exon 71569961 71570697 1247 - . gene_id "ERVLE_5q13.2a"; transcript_id "ERVLE_5q13.2a"; locus "ERVLE_5q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1391"; repClass "LTR"; repEnd "2553"; repFamily "ERVL"; repLeft "1858"; repStart "-3114"; ### HML6_5q13.2e ### chr5 rmsk gene 71571897 71578401 . + . gene_id "HML6_5q13.2e"; transcript_id "HML6_5q13.2e"; locus "HML6_5q13.2e"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0036"; model_cov "7198"; model_pct "99.9"; chr5 rmsk exon 71571897 71572378 3381 + . gene_id "HML6_5q13.2e"; transcript_id "HML6_5q13.2e"; locus "HML6_5q13.2e"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0036"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 71572379 71572946 22968 + . gene_id "HML6_5q13.2e"; transcript_id "HML6_5q13.2e"; locus "HML6_5q13.2e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0036"; repClass "LTR"; repEnd "590"; repFamily "ERVK"; repLeft "-6612"; repStart "1"; chr5 rmsk exon 71573256 71577918 22968 + . gene_id "HML6_5q13.2e"; transcript_id "HML6_5q13.2e"; locus "HML6_5q13.2e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0036"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "591"; chr5 rmsk exon 71577921 71578401 3478 + . gene_id "HML6_5q13.2e"; transcript_id "HML6_5q13.2e"; locus "HML6_5q13.2e"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0036"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_5q13.2b ### chr5 rmsk gene 71677044 71678515 . + . gene_id "ERVLE_5q13.2b"; transcript_id "ERVLE_5q13.2b"; locus "ERVLE_5q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1393"; model_cov "1226"; model_pct "21.6"; chr5 rmsk exon 71677044 71677236 278 + . gene_id "ERVLE_5q13.2b"; transcript_id "ERVLE_5q13.2b"; locus "ERVLE_5q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1393"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "-5315"; repStart "160"; chr5 rmsk exon 71677462 71677746 475 + . gene_id "ERVLE_5q13.2b"; transcript_id "ERVLE_5q13.2b"; locus "ERVLE_5q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1393"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "-4872"; repStart "526"; chr5 rmsk exon 71677774 71678515 1971 + . gene_id "ERVLE_5q13.2b"; transcript_id "ERVLE_5q13.2b"; locus "ERVLE_5q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1393"; repClass "LTR"; repEnd "2967"; repFamily "ERVL"; repLeft "-2700"; repStart "2202"; ### ERV316A3_5q13.2a ### chr5 rmsk gene 71815204 71817568 . - . gene_id "ERV316A3_5q13.2a"; transcript_id "ERV316A3_5q13.2a"; locus "ERV316A3_5q13.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1041"; model_cov "944"; model_pct "18.1"; chr5 rmsk exon 71815204 71815686 1571 - . gene_id "ERV316A3_5q13.2a"; transcript_id "ERV316A3_5q13.2a"; locus "ERV316A3_5q13.2a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1041"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "1"; repStart "-3"; chr5 rmsk exon 71816246 71816347 1768 - . gene_id "ERV316A3_5q13.2a"; transcript_id "ERV316A3_5q13.2a"; locus "ERV316A3_5q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1041"; repClass "LTR"; repEnd "2992"; repFamily "ERVL"; repLeft "2897"; repStart "-2234"; chr5 rmsk exon 71816746 71817568 1768 - . gene_id "ERV316A3_5q13.2a"; transcript_id "ERV316A3_5q13.2a"; locus "ERV316A3_5q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1041"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "2047"; repStart "-2330"; ### HERVL_5q13.2 ### chr5 rmsk gene 71896433 71902695 . + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0520"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 71896433 71896813 3217 + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0520"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr5 rmsk exon 71896843 71896876 3217 + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0520"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "404"; chr5 rmsk exon 71896877 71902482 45314 + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0520"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 71902483 71902645 1268 + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0520"; repClass "LTR"; repEnd "164"; repFamily "ERVL"; repLeft "-280"; repStart "1"; chr5 rmsk exon 71902646 71902695 357 + . gene_id "HERVL_5q13.2"; transcript_id "HERVL_5q13.2"; locus "HERVL_5q13.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0520"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "395"; ### ERV316A3_5q13.2b ### chr5 rmsk gene 71964788 71967151 . - . gene_id "ERV316A3_5q13.2b"; transcript_id "ERV316A3_5q13.2b"; locus "ERV316A3_5q13.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1042"; model_cov "1626"; model_pct "31.1"; chr5 rmsk exon 71964788 71965227 1687 - . gene_id "ERV316A3_5q13.2b"; transcript_id "ERV316A3_5q13.2b"; locus "ERV316A3_5q13.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1042"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "5"; repStart "-6"; chr5 rmsk exon 71965354 71965730 1190 - . gene_id "ERV316A3_5q13.2b"; transcript_id "ERV316A3_5q13.2b"; locus "ERV316A3_5q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1042"; repClass "LTR"; repEnd "5056"; repFamily "ERVL"; repLeft "4690"; repStart "-170"; chr5 rmsk exon 71965848 71967036 3021 - . gene_id "ERV316A3_5q13.2b"; transcript_id "ERV316A3_5q13.2b"; locus "ERV316A3_5q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1042"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "3353"; repStart "-613"; chr5 rmsk exon 71967045 71967151 372 - . gene_id "ERV316A3_5q13.2b"; transcript_id "ERV316A3_5q13.2b"; locus "ERV316A3_5q13.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1042"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "3"; repStart "-318"; ### ERV316A3_5q13.2c ### chr5 rmsk gene 71984718 71989999 . + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1043"; model_cov "4130"; model_pct "79.0"; chr5 rmsk exon 71984718 71985065 8578 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "1592"; repFamily "ERVL"; repLeft "-3634"; repStart "1224"; chr5 rmsk exon 71985367 71986708 8578 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "-2274"; repStart "1593"; chr5 rmsk exon 71987087 71988092 8578 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "3948"; repFamily "ERVL"; repLeft "-1278"; repStart "2953"; chr5 rmsk exon 71988091 71988252 561 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-810"; repStart "4269"; chr5 rmsk exon 71988256 71989521 4517 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "3963"; chr5 rmsk exon 71989524 71989999 1917 + . gene_id "ERV316A3_5q13.2c"; transcript_id "ERV316A3_5q13.2c"; locus "ERV316A3_5q13.2c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1043"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### ERV316A3_5q13.2d ### chr5 rmsk gene 71996929 72000851 . + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1044"; model_cov "2901"; model_pct "55.5"; chr5 rmsk exon 71996929 71997369 1023 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "28"; chr5 rmsk exon 71997386 71998556 3498 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "1255"; repFamily "ERVL"; repLeft "-3971"; repStart "44"; chr5 rmsk exon 71998576 71999760 3068 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "2531"; repFamily "ERVL"; repLeft "-2695"; repStart "1339"; chr5 rmsk exon 71999750 71999999 1122 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "4748"; repFamily "ERVL"; repLeft "-478"; repStart "4498"; chr5 rmsk exon 72000001 72000111 508 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "4861"; repFamily "ERVL"; repLeft "-365"; repStart "4750"; chr5 rmsk exon 72000129 72000264 612 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4929"; chr5 rmsk exon 72000393 72000851 1507 + . gene_id "ERV316A3_5q13.2d"; transcript_id "ERV316A3_5q13.2d"; locus "ERV316A3_5q13.2d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1044"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_5q13.2e ### chr5 rmsk gene 72436472 72438726 . + . gene_id "ERV316A3_5q13.2e"; transcript_id "ERV316A3_5q13.2e"; locus "ERV316A3_5q13.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1045"; model_cov "1481"; model_pct "28.3"; chr5 rmsk exon 72436472 72437677 4003 + . gene_id "ERV316A3_5q13.2e"; transcript_id "ERV316A3_5q13.2e"; locus "ERV316A3_5q13.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1045"; repClass "LTR"; repEnd "4925"; repFamily "ERVL"; repLeft "-301"; repStart "3715"; chr5 rmsk exon 72438058 72438322 929 + . gene_id "ERV316A3_5q13.2e"; transcript_id "ERV316A3_5q13.2e"; locus "ERV316A3_5q13.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1045"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "-23"; repStart "4932"; chr5 rmsk exon 72438324 72438726 1153 + . gene_id "ERV316A3_5q13.2e"; transcript_id "ERV316A3_5q13.2e"; locus "ERV316A3_5q13.2e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1045"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERV9_5q13.2 ### chr5 rmsk gene 72925317 72936334 . + . gene_id "HERV9_5q13.2"; transcript_id "HERV9_5q13.2"; locus "HERV9_5q13.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0056"; model_cov "8486"; model_pct "100.0"; chr5 rmsk exon 72925317 72926709 8714 + . gene_id "HERV9_5q13.2"; transcript_id "HERV9_5q13.2"; locus "HERV9_5q13.2"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0056"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 72926710 72926777 415 + . gene_id "HERV9_5q13.2"; transcript_id "HERV9_5q13.2"; locus "HERV9_5q13.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0056"; repClass "LTR"; repEnd "68"; repFamily "ERV1"; repLeft "-8368"; repStart "1"; chr5 rmsk exon 72926778 72935101 65398 + . gene_id "HERV9_5q13.2"; transcript_id "HERV9_5q13.2"; locus "HERV9_5q13.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0056"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "17"; chr5 rmsk exon 72935108 72936334 6142 + . gene_id "HERV9_5q13.2"; transcript_id "HERV9_5q13.2"; locus "HERV9_5q13.2"; repName "LTR12E"; geneRegion "ltr"; locid "HERV9-int_0056"; repClass "LTR"; repEnd "1322"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERVLE_5q13.2c ### chr5 rmsk gene 73166154 73170217 . - . gene_id "ERVLE_5q13.2c"; transcript_id "ERVLE_5q13.2c"; locus "ERVLE_5q13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1395"; model_cov "2995"; model_pct "52.8"; chr5 rmsk exon 73166154 73167178 8040 - . gene_id "ERVLE_5q13.2c"; transcript_id "ERVLE_5q13.2c"; locus "ERVLE_5q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1395"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "4594"; repStart "-1"; chr5 rmsk exon 73167616 73169068 8040 - . gene_id "ERVLE_5q13.2c"; transcript_id "ERVLE_5q13.2c"; locus "ERVLE_5q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1395"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "3089"; repStart "-1074"; chr5 rmsk exon 73169796 73170217 825 - . gene_id "ERVLE_5q13.2c"; transcript_id "ERVLE_5q13.2c"; locus "ERVLE_5q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1395"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "36"; repStart "-5212"; ### ERVLE_5q13.2d ### chr5 rmsk gene 73395554 73398002 . + . gene_id "ERVLE_5q13.2d"; transcript_id "ERVLE_5q13.2d"; locus "ERVLE_5q13.2d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1396"; model_cov "1933"; model_pct "34.1"; chr5 rmsk exon 73395554 73397440 9098 + . gene_id "ERVLE_5q13.2d"; transcript_id "ERVLE_5q13.2d"; locus "ERVLE_5q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1396"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "3734"; chr5 rmsk exon 73397441 73398002 1348 + . gene_id "ERVLE_5q13.2d"; transcript_id "ERVLE_5q13.2d"; locus "ERVLE_5q13.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1396"; repClass "LTR"; repEnd "656"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### ERV316A3_5q13.2f ### chr5 rmsk gene 73480666 73481544 . - . gene_id "ERV316A3_5q13.2f"; transcript_id "ERV316A3_5q13.2f"; locus "ERV316A3_5q13.2f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1046"; model_cov "913"; model_pct "17.5"; chr5 rmsk exon 73480666 73481544 7358 - . gene_id "ERV316A3_5q13.2f"; transcript_id "ERV316A3_5q13.2f"; locus "ERV316A3_5q13.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1046"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "4190"; repStart "-123"; ### ERVLB4_5q13.2 ### chr5 rmsk gene 73481793 73488217 . - . gene_id "ERVLB4_5q13.2"; transcript_id "ERVLB4_5q13.2"; locus "ERVLB4_5q13.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0635"; model_cov "3292"; model_pct "57.6"; chr5 rmsk exon 73481793 73484133 16028 - . gene_id "ERVLB4_5q13.2"; transcript_id "ERVLB4_5q13.2"; locus "ERVLB4_5q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0635"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "2035"; repStart "-1323"; chr5 rmsk exon 73484606 73484633 4982 - . gene_id "ERVLB4_5q13.2"; transcript_id "ERVLB4_5q13.2"; locus "ERVLB4_5q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0635"; repClass "LTR"; repEnd "2043"; repFamily "ERVL"; repLeft "2024"; repStart "-3671"; chr5 rmsk exon 73485157 73486025 4982 - . gene_id "ERVLB4_5q13.2"; transcript_id "ERVLB4_5q13.2"; locus "ERVLB4_5q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0635"; repClass "LTR"; repEnd "2023"; repFamily "ERVL"; repLeft "1149"; repStart "-3691"; chr5 rmsk exon 73488174 73488217 328 - . gene_id "ERVLB4_5q13.2"; transcript_id "ERVLB4_5q13.2"; locus "ERVLB4_5q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0635"; repClass "LTR"; repEnd "106"; repFamily "ERVL"; repLeft "63"; repStart "-5608"; ### MER4B_5q13.2 ### chr5 rmsk gene 73486648 73487460 . + . gene_id "MER4B_5q13.2"; transcript_id "MER4B_5q13.2"; locus "MER4B_5q13.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0170"; model_cov "732"; model_pct "10.8"; chr5 rmsk exon 73486648 73486701 341 + . gene_id "MER4B_5q13.2"; transcript_id "MER4B_5q13.2"; locus "MER4B_5q13.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0170"; repClass "LTR"; repEnd "50"; repFamily "ERV1"; repLeft "-560"; repStart "1"; chr5 rmsk exon 73486707 73486941 1271 + . gene_id "MER4B_5q13.2"; transcript_id "MER4B_5q13.2"; locus "MER4B_5q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0170"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "-6467"; repStart "55"; chr5 rmsk exon 73486981 73487460 3107 + . gene_id "MER4B_5q13.2"; transcript_id "MER4B_5q13.2"; locus "MER4B_5q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0170"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "-6024"; repStart "238"; ### HERVL_5q13.3 ### chr5 rmsk gene 74785888 74792672 . + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0521"; model_cov "5649"; model_pct "99.9"; chr5 rmsk exon 74785888 74786311 3191 + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0521"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr5 rmsk exon 74786316 74788423 19290 + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0521"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "-3498"; repStart "4"; chr5 rmsk exon 74788730 74792199 19290 + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0521"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2157"; chr5 rmsk exon 74792200 74792516 3255 + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0521"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "-139"; repStart "1"; chr5 rmsk exon 74792551 74792672 3255 + . gene_id "HERVL_5q13.3"; transcript_id "HERVL_5q13.3"; locus "HERVL_5q13.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0521"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "315"; ### ERVLE_5q13.3a ### chr5 rmsk gene 75278955 75279891 . + . gene_id "ERVLE_5q13.3a"; transcript_id "ERVLE_5q13.3a"; locus "ERVLE_5q13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1397"; model_cov "971"; model_pct "17.1"; chr5 rmsk exon 75278955 75279891 2216 + . gene_id "ERVLE_5q13.3a"; transcript_id "ERVLE_5q13.3a"; locus "ERVLE_5q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1397"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "-4018"; repStart "678"; ### MER4_5q13.3a ### chr5 rmsk gene 75285193 75286999 . + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0292"; model_cov "1062"; model_pct "16.1"; chr5 rmsk exon 75285193 75285328 3230 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0292"; repClass "LTR"; repEnd "138"; repFamily "ERV1"; repLeft "-334"; repStart "1"; chr5 rmsk exon 75285608 75285927 3230 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0292"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr5 rmsk exon 75285931 75286516 3145 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0292"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr5 rmsk exon 75286485 75286589 355 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0292"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "-5773"; repStart "751"; chr5 rmsk exon 75286594 75286634 253 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0292"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "-5872"; repStart "686"; chr5 rmsk exon 75286732 75286932 1241 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0292"; repClass "LTR"; repEnd "1225"; repFamily "ERV1"; repLeft "-5373"; repStart "993"; chr5 rmsk exon 75286968 75286999 1241 + . gene_id "MER4_5q13.3a"; transcript_id "MER4_5q13.3a"; locus "MER4_5q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0292"; repClass "LTR"; repEnd "1257"; repFamily "ERV1"; repLeft "-5341"; repStart "1226"; ### MER4_5q13.3b ### chr5 rmsk gene 75293709 75299636 . + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0293"; model_cov "4725"; model_pct "71.6"; chr5 rmsk exon 75293709 75294577 4189 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0293"; repClass "LTR"; repEnd "2256"; repFamily "ERV1"; repLeft "-4342"; repStart "1472"; chr5 rmsk exon 75294872 75295116 2430 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0293"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2257"; chr5 rmsk exon 75295357 75296278 4310 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0293"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2736"; chr5 rmsk exon 75296278 75296414 12321 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0293"; repClass "LTR"; repEnd "3968"; repFamily "ERV1"; repLeft "-2630"; repStart "3837"; chr5 rmsk exon 75296710 75299182 12321 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0293"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3969"; chr5 rmsk exon 75299192 75299636 3511 + . gene_id "MER4_5q13.3b"; transcript_id "MER4_5q13.3b"; locus "MER4_5q13.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0293"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_5q13.3 ### chr5 rmsk gene 75304455 75306428 . + . gene_id "HERVW_5q13.3"; transcript_id "HERVW_5q13.3"; locus "HERVW_5q13.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0122"; model_cov "1416"; model_pct "16.4"; chr5 rmsk exon 75304455 75304944 3545 + . gene_id "HERVW_5q13.3"; transcript_id "HERVW_5q13.3"; locus "HERVW_5q13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0122"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "-8"; repStart "256"; chr5 rmsk exon 75304958 75306428 9739 + . gene_id "HERVW_5q13.3"; transcript_id "HERVW_5q13.3"; locus "HERVW_5q13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0122"; repClass "LTR"; repEnd "1417"; repFamily "ERV1"; repLeft "-7209"; repStart "1"; ### ERV316A3_5q13.3a ### chr5 rmsk gene 75864386 75865984 . + . gene_id "ERV316A3_5q13.3a"; transcript_id "ERV316A3_5q13.3a"; locus "ERV316A3_5q13.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1047"; model_cov "1637"; model_pct "31.3"; chr5 rmsk exon 75864386 75864705 544 + . gene_id "ERV316A3_5q13.3a"; transcript_id "ERV316A3_5q13.3a"; locus "ERV316A3_5q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1047"; repClass "LTR"; repEnd "704"; repFamily "ERVL"; repLeft "-4522"; repStart "374"; chr5 rmsk exon 75864696 75865984 4348 + . gene_id "ERV316A3_5q13.3a"; transcript_id "ERV316A3_5q13.3a"; locus "ERV316A3_5q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1047"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "-1224"; repStart "2695"; ### ERVLE_5q13.3b ### chr5 rmsk gene 75956974 75958253 . + . gene_id "ERVLE_5q13.3b"; transcript_id "ERVLE_5q13.3b"; locus "ERVLE_5q13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1400"; model_cov "1229"; model_pct "21.7"; chr5 rmsk exon 75956974 75958037 2170 + . gene_id "ERVLE_5q13.3b"; transcript_id "ERVLE_5q13.3b"; locus "ERVLE_5q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1400"; repClass "LTR"; repEnd "3044"; repFamily "ERVL"; repLeft "-2623"; repStart "1959"; chr5 rmsk exon 75958109 75958253 519 + . gene_id "ERVLE_5q13.3b"; transcript_id "ERVLE_5q13.3b"; locus "ERVLE_5q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1400"; repClass "LTR"; repEnd "3319"; repFamily "ERVL"; repLeft "-2348"; repStart "3175"; ### ERVLB4_5q13.3a ### chr5 rmsk gene 76199651 76200272 . + . gene_id "ERVLB4_5q13.3a"; transcript_id "ERVLB4_5q13.3a"; locus "ERVLB4_5q13.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0636"; model_cov "647"; model_pct "11.3"; chr5 rmsk exon 76199651 76200272 3733 + . gene_id "ERVLB4_5q13.3a"; transcript_id "ERVLB4_5q13.3a"; locus "ERVLB4_5q13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0636"; repClass "LTR"; repEnd "2171"; repFamily "ERVL"; repLeft "-3543"; repStart "1524"; ### HERVH_5q13.3a ### chr5 rmsk gene 76357256 76363071 . + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0481"; model_cov "5061"; model_pct "65.6"; chr5 rmsk exon 76357256 76357705 3534 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 76357708 76360899 21082 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr5 rmsk exon 76360890 76361371 3279 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 76361374 76362030 4310 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 76362032 76362247 1429 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 76362246 76362625 2529 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 76362626 76363071 3414 + . gene_id "HERVH_5q13.3a"; transcript_id "HERVH_5q13.3a"; locus "HERVH_5q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0481"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_5q13.3b ### chr5 rmsk gene 76627891 76628460 . + . gene_id "ERVLB4_5q13.3b"; transcript_id "ERVLB4_5q13.3b"; locus "ERVLB4_5q13.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0637"; model_cov "584"; model_pct "10.2"; chr5 rmsk exon 76627891 76628460 3329 + . gene_id "ERVLB4_5q13.3b"; transcript_id "ERVLB4_5q13.3b"; locus "ERVLB4_5q13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0637"; repClass "LTR"; repEnd "2173"; repFamily "ERVL"; repLeft "-3541"; repStart "1589"; ### MER41_5q13.3 ### chr5 rmsk gene 76780826 76782667 . + . gene_id "MER41_5q13.3"; transcript_id "MER41_5q13.3"; locus "MER41_5q13.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0179"; model_cov "908"; model_pct "15.3"; chr5 rmsk exon 76780826 76781364 4011 + . gene_id "MER41_5q13.3"; transcript_id "MER41_5q13.3"; locus "MER41_5q13.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0179"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 76781365 76782000 3454 + . gene_id "MER41_5q13.3"; transcript_id "MER41_5q13.3"; locus "MER41_5q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0179"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "-5340"; repStart "1"; chr5 rmsk exon 76782038 76782076 1423 + . gene_id "MER41_5q13.3"; transcript_id "MER41_5q13.3"; locus "MER41_5q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0179"; repClass "LTR"; repEnd "1116"; repFamily "ERV1"; repLeft "-4830"; repStart "1095"; chr5 rmsk exon 76782386 76782667 1732 + . gene_id "MER41_5q13.3"; transcript_id "MER41_5q13.3"; locus "MER41_5q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0179"; repClass "LTR"; repEnd "1687"; repFamily "ERV1"; repLeft "-4259"; repStart "1405"; ### HERVH_5q13.3b ### chr5 rmsk gene 76879901 76887017 . - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0482"; model_cov "5980"; model_pct "77.5"; chr5 rmsk exon 76879901 76880332 3402 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 76880430 76880852 3112 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "7618"; repFamily "ERV1"; repLeft "7196"; repStart "-95"; chr5 rmsk exon 76880909 76881179 1400 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr5 rmsk exon 76881180 76885610 9543 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "458"; repStart "-2803"; chr5 rmsk exon 76885744 76886587 3397 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "838"; repFamily "ERV1"; repLeft "1"; repStart "-6875"; chr5 rmsk exon 76886588 76887017 3433 - . gene_id "HERVH_5q13.3b"; transcript_id "HERVH_5q13.3b"; locus "HERVH_5q13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0482"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERV316A3_5q13.3b ### chr5 rmsk gene 77121989 77122683 . - . gene_id "ERV316A3_5q13.3b"; transcript_id "ERV316A3_5q13.3b"; locus "ERV316A3_5q13.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1049"; model_cov "848"; model_pct "16.2"; chr5 rmsk exon 77121989 77122683 1380 - . gene_id "ERV316A3_5q13.3b"; transcript_id "ERV316A3_5q13.3b"; locus "ERV316A3_5q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1049"; repClass "LTR"; repEnd "4852"; repFamily "ERVL"; repLeft "4004"; repStart "-374"; ### ERVLE_5q13.3c ### chr5 rmsk gene 77126832 77127905 . - . gene_id "ERVLE_5q13.3c"; transcript_id "ERVLE_5q13.3c"; locus "ERVLE_5q13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1402"; model_cov "701"; model_pct "12.4"; chr5 rmsk exon 77126832 77127162 648 - . gene_id "ERVLE_5q13.3c"; transcript_id "ERVLE_5q13.3c"; locus "ERVLE_5q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1402"; repClass "LTR"; repEnd "1199"; repFamily "ERVL"; repLeft "883"; repStart "-4468"; chr5 rmsk exon 77127544 77127905 648 - . gene_id "ERVLE_5q13.3c"; transcript_id "ERVLE_5q13.3c"; locus "ERVLE_5q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1402"; repClass "LTR"; repEnd "882"; repFamily "ERVL"; repLeft "497"; repStart "-4785"; ### ERV316A3_5q13.3c ### chr5 rmsk gene 77133891 77135356 . + . gene_id "ERV316A3_5q13.3c"; transcript_id "ERV316A3_5q13.3c"; locus "ERV316A3_5q13.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1050"; model_cov "960"; model_pct "18.4"; chr5 rmsk exon 77133891 77134694 3169 + . gene_id "ERV316A3_5q13.3c"; transcript_id "ERV316A3_5q13.3c"; locus "ERV316A3_5q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1050"; repClass "LTR"; repEnd "4891"; repFamily "ERVL"; repLeft "-335"; repStart "4093"; chr5 rmsk exon 77134740 77134902 751 + . gene_id "ERV316A3_5q13.3c"; transcript_id "ERV316A3_5q13.3c"; locus "ERV316A3_5q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1050"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "-54"; repStart "5010"; chr5 rmsk exon 77134928 77135356 1511 + . gene_id "ERV316A3_5q13.3c"; transcript_id "ERV316A3_5q13.3c"; locus "ERV316A3_5q13.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1050"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4B_5q13.3 ### chr5 rmsk gene 77392679 77397596 . - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0171"; model_cov "3564"; model_pct "52.7"; chr5 rmsk exon 77392679 77393120 4120 - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0171"; repClass "LTR"; repEnd "6070"; repFamily "ERV1"; repLeft "5606"; repStart "-688"; chr5 rmsk exon 77393421 77395124 8657 - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0171"; repClass "LTR"; repEnd "6032"; repFamily "ERV1"; repLeft "4750"; repStart "-726"; chr5 rmsk exon 77395415 77397026 8657 - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0171"; repClass "LTR"; repEnd "4322"; repFamily "ERV1"; repLeft "2746"; repStart "-2436"; chr5 rmsk exon 77397330 77397522 8657 - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0171"; repClass "LTR"; repEnd "2745"; repFamily "ERV1"; repLeft "2580"; repStart "-4013"; chr5 rmsk exon 77397508 77397596 299 - . gene_id "MER4B_5q13.3"; transcript_id "MER4B_5q13.3"; locus "MER4B_5q13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0171"; repClass "LTR"; repEnd "2893"; repFamily "ERV1"; repLeft "2816"; repStart "-3865"; ### MER4B_5q14.1 ### chr5 rmsk gene 77751478 77756649 . - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0174"; model_cov "2896"; model_pct "42.9"; chr5 rmsk exon 77751478 77751582 3083 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "94"; repFamily "ERV1"; repLeft "1"; repStart "-516"; chr5 rmsk exon 77752398 77752426 14229 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "3094"; repFamily "ERV1"; repLeft "3064"; repStart "-3664"; chr5 rmsk exon 77752993 77753785 14229 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "3063"; repFamily "ERV1"; repLeft "2255"; repStart "-3695"; chr5 rmsk exon 77754056 77755296 14229 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "2254"; repFamily "ERV1"; repLeft "895"; repStart "-4504"; chr5 rmsk exon 77755590 77755722 14229 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "894"; repFamily "ERV1"; repLeft "804"; repStart "-5864"; chr5 rmsk exon 77756033 77756649 14229 - . gene_id "MER4B_5q14.1"; transcript_id "MER4B_5q14.1"; locus "MER4B_5q14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0174"; repClass "LTR"; repEnd "803"; repFamily "ERV1"; repLeft "194"; repStart "-5955"; ### MER4_5q14.1 ### chr5 rmsk gene 77756674 77757868 . - . gene_id "MER4_5q14.1"; transcript_id "MER4_5q14.1"; locus "MER4_5q14.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0294"; model_cov "1199"; model_pct "18.2"; chr5 rmsk exon 77756674 77757008 1329 - . gene_id "MER4_5q14.1"; transcript_id "MER4_5q14.1"; locus "MER4_5q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0294"; repClass "LTR"; repEnd "2471"; repFamily "ERV1"; repLeft "2112"; repStart "-4127"; chr5 rmsk exon 77757043 77757706 2596 - . gene_id "MER4_5q14.1"; transcript_id "MER4_5q14.1"; locus "MER4_5q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0294"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "1"; repStart "-5757"; chr5 rmsk exon 77757711 77757868 1150 - . gene_id "MER4_5q14.1"; transcript_id "MER4_5q14.1"; locus "MER4_5q14.1"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0294"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "451"; repStart "-2"; ### ERV316A3_5q14.1 ### chr5 rmsk gene 79228212 79231720 . + . gene_id "ERV316A3_5q14.1"; transcript_id "ERV316A3_5q14.1"; locus "ERV316A3_5q14.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1051"; model_cov "1910"; model_pct "36.5"; chr5 rmsk exon 79228212 79229807 3112 + . gene_id "ERV316A3_5q14.1"; transcript_id "ERV316A3_5q14.1"; locus "ERV316A3_5q14.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1051"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "1015"; chr5 rmsk exon 79230925 79231100 657 + . gene_id "ERV316A3_5q14.1"; transcript_id "ERV316A3_5q14.1"; locus "ERV316A3_5q14.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1051"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5047"; chr5 rmsk exon 79231101 79231303 883 + . gene_id "ERV316A3_5q14.1"; transcript_id "ERV316A3_5q14.1"; locus "ERV316A3_5q14.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1051"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "-205"; repStart "1"; chr5 rmsk exon 79231610 79231720 883 + . gene_id "ERV316A3_5q14.1"; transcript_id "ERV316A3_5q14.1"; locus "ERV316A3_5q14.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1051"; repClass "LTR"; repEnd "353"; repFamily "ERVL"; repLeft "-69"; repStart "218"; ### HUERSP1_5q14.1 ### chr5 rmsk gene 79577555 79581022 . + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; category "unknown"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0073"; model_cov "1982"; model_pct "31.6"; chr5 rmsk exon 79577555 79578139 4576 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "146"; chr5 rmsk exon 79578145 79578334 1233 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "200"; repFamily "ERV1"; repLeft "-6063"; repStart "7"; chr5 rmsk exon 79578335 79578480 1087 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "546"; chr5 rmsk exon 79578481 79579151 2114 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "797"; repFamily "ERV1"; repLeft "-5466"; repStart "1"; chr5 rmsk exon 79579142 79579203 439 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "1192"; repFamily "ERV1"; repLeft "-5071"; repStart "1131"; chr5 rmsk exon 79579202 79579562 4471 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "5669"; repFamily "ERV1"; repLeft "-594"; repStart "5329"; chr5 rmsk exon 79579896 79580449 4471 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "5670"; chr5 rmsk exon 79580450 79581022 4118 + . gene_id "HUERSP1_5q14.1"; transcript_id "HUERSP1_5q14.1"; locus "HUERSP1_5q14.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0073"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "-158"; repStart "1"; ### HERV4_5q14.1a ### chr5 rmsk gene 80890887 80893148 . - . gene_id "HERV4_5q14.1a"; transcript_id "HERV4_5q14.1a"; locus "HERV4_5q14.1a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0044"; model_cov "2050"; model_pct "31.4"; chr5 rmsk exon 80890887 80891373 1641 - . gene_id "HERV4_5q14.1a"; transcript_id "HERV4_5q14.1a"; locus "HERV4_5q14.1a"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0044"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "-157"; repStart "0"; chr5 rmsk exon 80891375 80892425 1836 - . gene_id "HERV4_5q14.1a"; transcript_id "HERV4_5q14.1a"; locus "HERV4_5q14.1a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0044"; repClass "LTR"; repEnd "6327"; repFamily "ERV1"; repLeft "4366"; repStart "-212"; chr5 rmsk exon 80893060 80893148 289 - . gene_id "HERV4_5q14.1a"; transcript_id "HERV4_5q14.1a"; locus "HERV4_5q14.1a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0044"; repClass "LTR"; repEnd "4901"; repFamily "ERV1"; repLeft "4812"; repStart "-1638"; ### HERV4_5q14.1b ### chr5 rmsk gene 80893312 80901510 . - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0045"; model_cov "5192"; model_pct "79.4"; chr5 rmsk exon 80893312 80894086 5297 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5237"; repStart "-493"; chr5 rmsk exon 80894527 80894750 8158 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "5219"; repFamily "ERV1"; repLeft "5003"; repStart "-1320"; chr5 rmsk exon 80895057 80896126 8158 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "5002"; repFamily "ERV1"; repLeft "3952"; repStart "-1537"; chr5 rmsk exon 80896121 80896335 14372 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "3637"; repFamily "ERV1"; repLeft "3451"; repStart "-2902"; chr5 rmsk exon 80896649 80896886 14372 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "3450"; repFamily "ERV1"; repLeft "3235"; repStart "-3089"; chr5 rmsk exon 80897202 80897844 14372 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "3234"; repFamily "ERV1"; repLeft "2600"; repStart "-3305"; chr5 rmsk exon 80898155 80900091 14372 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "2599"; repFamily "ERV1"; repLeft "587"; repStart "-3940"; chr5 rmsk exon 80900570 80900642 275 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "71"; repFamily "ERV1"; repLeft "1"; repStart "-6468"; chr5 rmsk exon 80900643 80900771 1837 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "225"; repStart "0"; chr5 rmsk exon 80901075 80901510 1837 - . gene_id "HERV4_5q14.1b"; transcript_id "HERV4_5q14.1b"; locus "HERV4_5q14.1b"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0045"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "1"; repStart "-100"; ### HERVL40_5q14.1 ### chr5 rmsk gene 80973111 80974789 . - . gene_id "HERVL40_5q14.1"; transcript_id "HERVL40_5q14.1"; locus "HERVL40_5q14.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0156"; model_cov "1487"; model_pct "26.9"; chr5 rmsk exon 80973111 80973498 539 - . gene_id "HERVL40_5q14.1"; transcript_id "HERVL40_5q14.1"; locus "HERVL40_5q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0156"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4469"; repStart "-870"; chr5 rmsk exon 80973527 80973834 1396 - . gene_id "HERVL40_5q14.1"; transcript_id "HERVL40_5q14.1"; locus "HERVL40_5q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0156"; repClass "LTR"; repEnd "4287"; repFamily "ERVL"; repLeft "3988"; repStart "-1243"; chr5 rmsk exon 80973862 80974322 1303 - . gene_id "HERVL40_5q14.1"; transcript_id "HERVL40_5q14.1"; locus "HERVL40_5q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0156"; repClass "LTR"; repEnd "3799"; repFamily "ERVL"; repLeft "3216"; repStart "-1731"; chr5 rmsk exon 80974365 80974789 1744 - . gene_id "HERVL40_5q14.1"; transcript_id "HERVL40_5q14.1"; locus "HERVL40_5q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0156"; repClass "LTR"; repEnd "3113"; repFamily "ERVL"; repLeft "2699"; repStart "-2417"; ### ERVL_5q14.1 ### chr5 rmsk gene 81948281 81949967 . + . gene_id "ERVL_5q14.1"; transcript_id "ERVL_5q14.1"; locus "ERVL_5q14.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0145"; model_cov "1439"; model_pct "25.0"; chr5 rmsk exon 81948281 81948427 471 + . gene_id "ERVL_5q14.1"; transcript_id "ERVL_5q14.1"; locus "ERVL_5q14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0145"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2642"; repStart "2961"; chr5 rmsk exon 81948439 81948822 682 + . gene_id "ERVL_5q14.1"; transcript_id "ERVL_5q14.1"; locus "ERVL_5q14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0145"; repClass "LTR"; repEnd "3621"; repFamily "ERVL"; repLeft "-2136"; repStart "3191"; chr5 rmsk exon 81949166 81949967 1228 + . gene_id "ERVL_5q14.1"; transcript_id "ERVL_5q14.1"; locus "ERVL_5q14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0145"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "-826"; repStart "4076"; ### HERVH_5q14.1 ### chr5 rmsk gene 81953304 81959235 . + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0483"; model_cov "5258"; model_pct "68.2"; chr5 rmsk exon 81953304 81953661 2250 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 81953664 81957567 26190 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr5 rmsk exon 81957572 81958228 4379 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4490"; chr5 rmsk exon 81958233 81958449 1453 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 81958448 81958824 2342 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 81958825 81959235 2791 + . gene_id "HERVH_5q14.1"; transcript_id "HERVH_5q14.1"; locus "HERVH_5q14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0483"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_5q14.2 ### chr5 rmsk gene 82267274 82273743 . - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0074"; model_cov "5564"; model_pct "80.7"; chr5 rmsk exon 82267274 82267749 3700 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 82267750 82271274 23245 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr5 rmsk exon 82271274 82272264 6183 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr5 rmsk exon 82272250 82272903 4403 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "901"; repFamily "ERV1"; repLeft "262"; repStart "-5995"; chr5 rmsk exon 82272899 82273283 2563 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr5 rmsk exon 82273284 82273743 3522 - . gene_id "HARLEQUIN_5q14.2"; transcript_id "HARLEQUIN_5q14.2"; locus "HARLEQUIN_5q14.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0074"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_5q14.2 ### chr5 rmsk gene 82320173 82321822 . + . gene_id "ERVLE_5q14.2"; transcript_id "ERVLE_5q14.2"; locus "ERVLE_5q14.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1405"; model_cov "714"; model_pct "12.6"; chr5 rmsk exon 82320173 82320316 294 + . gene_id "ERVLE_5q14.2"; transcript_id "ERVLE_5q14.2"; locus "ERVLE_5q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1405"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-5148"; repStart "372"; chr5 rmsk exon 82321250 82321822 1315 + . gene_id "ERVLE_5q14.2"; transcript_id "ERVLE_5q14.2"; locus "ERVLE_5q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1405"; repClass "LTR"; repEnd "1437"; repFamily "ERVL"; repLeft "-4230"; repStart "870"; ### ERV316A3_5q14.2 ### chr5 rmsk gene 82703975 82707538 . - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1054"; model_cov "2719"; model_pct "52.0"; chr5 rmsk exon 82703975 82704478 839 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "3237"; repFamily "ERVL"; repLeft "2733"; repStart "-1989"; chr5 rmsk exon 82704502 82705312 2164 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "2165"; repStart "-2282"; chr5 rmsk exon 82705558 82706622 1994 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "87"; repStart "-4043"; chr5 rmsk exon 82706729 82707036 351 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "267"; repStart "-4619"; chr5 rmsk exon 82707085 82707159 1474 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "353"; repStart "-10"; chr5 rmsk exon 82707201 82707538 1474 - . gene_id "ERV316A3_5q14.2"; transcript_id "ERV316A3_5q14.2"; locus "ERV316A3_5q14.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1054"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "5"; repStart "-86"; ### HERVIP10F_5q14.2 ### chr5 rmsk gene 82969116 82971949 . - . gene_id "HERVIP10F_5q14.2"; transcript_id "HERVIP10F_5q14.2"; locus "HERVIP10F_5q14.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0041"; model_cov "1421"; model_pct "18.4"; chr5 rmsk exon 82969116 82969614 2880 - . gene_id "HERVIP10F_5q14.2"; transcript_id "HERVIP10F_5q14.2"; locus "HERVIP10F_5q14.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0041"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "-121"; repStart "-43"; chr5 rmsk exon 82969618 82970604 10071 - . gene_id "HERVIP10F_5q14.2"; transcript_id "HERVIP10F_5q14.2"; locus "HERVIP10F_5q14.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0041"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "6749"; repStart "-4"; chr5 rmsk exon 82971374 82971746 10071 - . gene_id "HERVIP10F_5q14.2"; transcript_id "HERVIP10F_5q14.2"; locus "HERVIP10F_5q14.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0041"; repClass "LTR"; repEnd "6748"; repFamily "ERV1"; repLeft "6380"; repStart "-989"; chr5 rmsk exon 82971880 82971949 325 - . gene_id "HERVIP10F_5q14.2"; transcript_id "HERVIP10F_5q14.2"; locus "HERVIP10F_5q14.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0041"; repClass "LTR"; repEnd "6252"; repFamily "ERV1"; repLeft "6183"; repStart "-1485"; ### HERVIP10FH_5q14.2 ### chr5 rmsk gene 82971940 82976282 . - . gene_id "HERVIP10FH_5q14.2"; transcript_id "HERVIP10FH_5q14.2"; locus "HERVIP10FH_5q14.2"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0055"; model_cov "3135"; model_pct "61.4"; chr5 rmsk exon 82971940 82972375 16338 - . gene_id "HERVIP10FH_5q14.2"; transcript_id "HERVIP10FH_5q14.2"; locus "HERVIP10FH_5q14.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0055"; repClass "LTR"; repEnd "3139"; repFamily "ERV1"; repLeft "2698"; repStart "-1963"; chr5 rmsk exon 82972687 82973092 16338 - . gene_id "HERVIP10FH_5q14.2"; transcript_id "HERVIP10FH_5q14.2"; locus "HERVIP10FH_5q14.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0055"; repClass "LTR"; repEnd "2697"; repFamily "ERV1"; repLeft "2287"; repStart "-2405"; chr5 rmsk exon 82973391 82975593 16338 - . gene_id "HERVIP10FH_5q14.2"; transcript_id "HERVIP10FH_5q14.2"; locus "HERVIP10FH_5q14.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0055"; repClass "LTR"; repEnd "2286"; repFamily "ERV1"; repLeft "2"; repStart "-2816"; chr5 rmsk exon 82975612 82976282 1813 - . gene_id "HERVIP10FH_5q14.2"; transcript_id "HERVIP10FH_5q14.2"; locus "HERVIP10FH_5q14.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0055"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "2"; repStart "-16"; ### ERVLB4_5q14.3a ### chr5 rmsk gene 83623959 83626511 . + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0638"; model_cov "2296"; model_pct "40.2"; chr5 rmsk exon 83623959 83624366 876 + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0638"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-4443"; repStart "857"; chr5 rmsk exon 83624403 83624862 1193 + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0638"; repClass "LTR"; repEnd "1930"; repFamily "ERVL"; repLeft "-3784"; repStart "1464"; chr5 rmsk exon 83624903 83625558 1479 + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0638"; repClass "LTR"; repEnd "3033"; repFamily "ERVL"; repLeft "-2681"; repStart "2328"; chr5 rmsk exon 83625584 83625827 734 + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0638"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "-2159"; repStart "3300"; chr5 rmsk exon 83626155 83626511 1047 + . gene_id "ERVLB4_5q14.3a"; transcript_id "ERVLB4_5q14.3a"; locus "ERVLB4_5q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0638"; repClass "LTR"; repEnd "4428"; repFamily "ERVL"; repLeft "-1286"; repStart "3972"; ### ERVLB4_5q14.3b ### chr5 rmsk gene 83918855 83920467 . + . gene_id "ERVLB4_5q14.3b"; transcript_id "ERVLB4_5q14.3b"; locus "ERVLB4_5q14.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0639"; model_cov "1204"; model_pct "21.1"; chr5 rmsk exon 83918855 83920010 6535 + . gene_id "ERVLB4_5q14.3b"; transcript_id "ERVLB4_5q14.3b"; locus "ERVLB4_5q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0639"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "-3"; repStart "4507"; chr5 rmsk exon 83920014 83920467 1898 + . gene_id "ERVLB4_5q14.3b"; transcript_id "ERVLB4_5q14.3b"; locus "ERVLB4_5q14.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0639"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL32_5q14.3 ### chr5 rmsk gene 84172727 84175214 . + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0020"; model_cov "1690"; model_pct "49.4"; chr5 rmsk exon 84172727 84172793 521 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "71"; repFamily "ERVL"; repLeft "-386"; repStart "5"; chr5 rmsk exon 84172809 84173035 1202 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "229"; chr5 rmsk exon 84173038 84173403 1241 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-3027"; repStart "16"; chr5 rmsk exon 84173479 84173932 1575 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "1101"; repFamily "ERVL"; repLeft "-2317"; repStart "652"; chr5 rmsk exon 84174007 84174475 1593 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "1711"; repFamily "ERVL"; repLeft "-1707"; repStart "1240"; chr5 rmsk exon 84174465 84174646 402 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "-869"; repStart "2350"; chr5 rmsk exon 84174770 84174951 596 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "3417"; repFamily "ERVL"; repLeft "-1"; repStart "3221"; chr5 rmsk exon 84174992 84175214 1132 + . gene_id "HERVL32_5q14.3"; transcript_id "HERVL32_5q14.3"; locus "HERVL32_5q14.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0020"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "229"; ### ERV316A3_5q14.3a ### chr5 rmsk gene 84588454 84589842 . + . gene_id "ERV316A3_5q14.3a"; transcript_id "ERV316A3_5q14.3a"; locus "ERV316A3_5q14.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1056"; model_cov "549"; model_pct "10.5"; chr5 rmsk exon 84588454 84588638 758 + . gene_id "ERV316A3_5q14.3a"; transcript_id "ERV316A3_5q14.3a"; locus "ERV316A3_5q14.3a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1056"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "284"; chr5 rmsk exon 84588757 84589284 1763 + . gene_id "ERV316A3_5q14.3a"; transcript_id "ERV316A3_5q14.3a"; locus "ERV316A3_5q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1056"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4676"; chr5 rmsk exon 84589286 84589549 886 + . gene_id "ERV316A3_5q14.3a"; transcript_id "ERV316A3_5q14.3a"; locus "ERV316A3_5q14.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1056"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "-167"; repStart "1"; chr5 rmsk exon 84589690 84589842 315 + . gene_id "ERV316A3_5q14.3a"; transcript_id "ERV316A3_5q14.3a"; locus "ERV316A3_5q14.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1056"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-72"; repStart "243"; ### ERVLE_5q14.3a ### chr5 rmsk gene 84652645 84654393 . + . gene_id "ERVLE_5q14.3a"; transcript_id "ERVLE_5q14.3a"; locus "ERVLE_5q14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1409"; model_cov "1459"; model_pct "25.7"; chr5 rmsk exon 84652645 84653179 701 + . gene_id "ERVLE_5q14.3a"; transcript_id "ERVLE_5q14.3a"; locus "ERVLE_5q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1409"; repClass "LTR"; repEnd "636"; repFamily "ERVL"; repLeft "-5031"; repStart "101"; chr5 rmsk exon 84653495 84654393 701 + . gene_id "ERVLE_5q14.3a"; transcript_id "ERVLE_5q14.3a"; locus "ERVLE_5q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1409"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "-4106"; repStart "637"; ### ERVLB4_5q14.3c ### chr5 rmsk gene 84654576 84655272 . + . gene_id "ERVLB4_5q14.3c"; transcript_id "ERVLB4_5q14.3c"; locus "ERVLB4_5q14.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0640"; model_cov "594"; model_pct "10.4"; chr5 rmsk exon 84654576 84654950 377 + . gene_id "ERVLB4_5q14.3c"; transcript_id "ERVLB4_5q14.3c"; locus "ERVLB4_5q14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0640"; repClass "LTR"; repEnd "5299"; repFamily "ERVL"; repLeft "-415"; repStart "4931"; chr5 rmsk exon 84655059 84655272 324 + . gene_id "ERVLB4_5q14.3c"; transcript_id "ERVLB4_5q14.3c"; locus "ERVLB4_5q14.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0640"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "-55"; repStart "5433"; ### HERVH_5q14.3a ### chr5 rmsk gene 84698675 84704204 . + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0484"; model_cov "4904"; model_pct "63.6"; chr5 rmsk exon 84698675 84701894 16883 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "5"; chr5 rmsk exon 84701874 84702023 976 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 84702014 84702518 3331 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 84702521 84703177 4304 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 84703179 84703381 1173 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 84703380 84703746 2485 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "7705"; repFamily "ERV1"; repLeft "-8"; repStart "7322"; chr5 rmsk exon 84703755 84704204 3386 + . gene_id "HERVH_5q14.3a"; transcript_id "HERVH_5q14.3a"; locus "HERVH_5q14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0484"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_5q14.3a ### chr5 rmsk gene 84846253 84850359 . + . gene_id "HERVL_5q14.3a"; transcript_id "HERVL_5q14.3a"; locus "HERVL_5q14.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0523"; model_cov "3663"; model_pct "64.8"; chr5 rmsk exon 84846253 84846824 4360 + . gene_id "HERVL_5q14.3a"; transcript_id "HERVL_5q14.3a"; locus "HERVL_5q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0523"; repClass "LTR"; repEnd "2216"; repFamily "ERVL"; repLeft "-3438"; repStart "1642"; chr5 rmsk exon 84846839 84849895 22615 + . gene_id "HERVL_5q14.3a"; transcript_id "HERVL_5q14.3a"; locus "HERVL_5q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0523"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2565"; chr5 rmsk exon 84849896 84850359 3047 + . gene_id "HERVL_5q14.3a"; transcript_id "HERVL_5q14.3a"; locus "HERVL_5q14.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0523"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_5q14.3b ### chr5 rmsk gene 85095940 85097356 . - . gene_id "ERV316A3_5q14.3b"; transcript_id "ERV316A3_5q14.3b"; locus "ERV316A3_5q14.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1057"; model_cov "1482"; model_pct "28.4"; chr5 rmsk exon 85095940 85096572 687 - . gene_id "ERV316A3_5q14.3b"; transcript_id "ERV316A3_5q14.3b"; locus "ERV316A3_5q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1057"; repClass "LTR"; repEnd "4009"; repFamily "ERVL"; repLeft "3113"; repStart "-1217"; chr5 rmsk exon 85096640 85096944 564 - . gene_id "ERV316A3_5q14.3b"; transcript_id "ERV316A3_5q14.3b"; locus "ERV316A3_5q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1057"; repClass "LTR"; repEnd "3180"; repFamily "ERVL"; repLeft "2868"; repStart "-2046"; chr5 rmsk exon 85097092 85097356 576 - . gene_id "ERV316A3_5q14.3b"; transcript_id "ERV316A3_5q14.3b"; locus "ERV316A3_5q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1057"; repClass "LTR"; repEnd "3041"; repFamily "ERVL"; repLeft "2767"; repStart "-2185"; ### ERVLE_5q14.3b ### chr5 rmsk gene 85141075 85142885 . - . gene_id "ERVLE_5q14.3b"; transcript_id "ERVLE_5q14.3b"; locus "ERVLE_5q14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1411"; model_cov "985"; model_pct "17.4"; chr5 rmsk exon 85141075 85141600 608 - . gene_id "ERVLE_5q14.3b"; transcript_id "ERVLE_5q14.3b"; locus "ERVLE_5q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1411"; repClass "LTR"; repEnd "1542"; repFamily "ERVL"; repLeft "985"; repStart "-4125"; chr5 rmsk exon 85141842 85142089 394 - . gene_id "ERVLE_5q14.3b"; transcript_id "ERVLE_5q14.3b"; locus "ERVLE_5q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1411"; repClass "LTR"; repEnd "693"; repFamily "ERVL"; repLeft "435"; repStart "-4974"; chr5 rmsk exon 85142715 85142885 282 - . gene_id "ERVLE_5q14.3b"; transcript_id "ERVLE_5q14.3b"; locus "ERVLE_5q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1411"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "4"; repStart "-5493"; ### HERVL_5q14.3b ### chr5 rmsk gene 85244688 85251252 . - . gene_id "HERVL_5q14.3b"; transcript_id "HERVL_5q14.3b"; locus "HERVL_5q14.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0524"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 85244688 85245146 2912 - . gene_id "HERVL_5q14.3b"; transcript_id "HERVL_5q14.3b"; locus "HERVL_5q14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0524"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 85245147 85250836 42310 - . gene_id "HERVL_5q14.3b"; transcript_id "HERVL_5q14.3b"; locus "HERVL_5q14.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0524"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 85250837 85251252 2758 - . gene_id "HERVL_5q14.3b"; transcript_id "HERVL_5q14.3b"; locus "HERVL_5q14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0524"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_5q14.3c ### chr5 rmsk gene 85438901 85442542 . + . gene_id "ERV316A3_5q14.3c"; transcript_id "ERV316A3_5q14.3c"; locus "ERV316A3_5q14.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1058"; model_cov "3677"; model_pct "70.4"; chr5 rmsk exon 85438901 85441498 5600 + . gene_id "ERV316A3_5q14.3c"; transcript_id "ERV316A3_5q14.3c"; locus "ERV316A3_5q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1058"; repClass "LTR"; repEnd "3288"; repFamily "ERVL"; repLeft "-1938"; repStart "661"; chr5 rmsk exon 85441512 85442128 1659 + . gene_id "ERV316A3_5q14.3c"; transcript_id "ERV316A3_5q14.3c"; locus "ERV316A3_5q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1058"; repClass "LTR"; repEnd "4360"; repFamily "ERVL"; repLeft "-866"; repStart "3728"; chr5 rmsk exon 85442126 85442542 461 + . gene_id "ERV316A3_5q14.3c"; transcript_id "ERV316A3_5q14.3c"; locus "ERV316A3_5q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1058"; repClass "LTR"; repEnd "4444"; repFamily "ERVL"; repLeft "-782"; repStart "4026"; ### HERVP71A_5q14.3 ### chr5 rmsk gene 85647002 85648160 . - . gene_id "HERVP71A_5q14.3"; transcript_id "HERVP71A_5q14.3"; locus "HERVP71A_5q14.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0025"; model_cov "820"; model_pct "10.8"; chr5 rmsk exon 85647002 85647706 2978 - . gene_id "HERVP71A_5q14.3"; transcript_id "HERVP71A_5q14.3"; locus "HERVP71A_5q14.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0025"; repClass "LTR"; repEnd "822"; repFamily "ERV1"; repLeft "2"; repStart "-6768"; chr5 rmsk exon 85647707 85648160 3268 - . gene_id "HERVP71A_5q14.3"; transcript_id "HERVP71A_5q14.3"; locus "HERVP71A_5q14.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0025"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_5q14.3a ### chr5 rmsk gene 85787161 85790185 . - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0158"; model_cov "1541"; model_pct "27.9"; chr5 rmsk exon 85787161 85787659 1436 - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0158"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chr5 rmsk exon 85787662 85787998 837 - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0158"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5247"; repStart "0"; chr5 rmsk exon 85788806 85788968 493 - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0158"; repClass "LTR"; repEnd "4854"; repFamily "ERVL"; repLeft "4691"; repStart "-676"; chr5 rmsk exon 85789084 85789337 799 - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0158"; repClass "LTR"; repEnd "4403"; repFamily "ERVL"; repLeft "4140"; repStart "-1127"; chr5 rmsk exon 85789413 85790185 1505 - . gene_id "HERVL40_5q14.3a"; transcript_id "HERVL40_5q14.3a"; locus "HERVL40_5q14.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0158"; repClass "LTR"; repEnd "3683"; repFamily "ERVL"; repLeft "2851"; repStart "-1847"; ### MER4B_5q14.3 ### chr5 rmsk gene 85808049 85814668 . - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0176"; model_cov "4186"; model_pct "61.9"; chr5 rmsk exon 85808049 85808925 4745 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "890"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr5 rmsk exon 85808927 85810287 7254 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5450"; repStart "0"; chr5 rmsk exon 85810600 85810878 7254 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "5449"; repFamily "ERV1"; repLeft "5133"; repStart "-1309"; chr5 rmsk exon 85810858 85811625 8523 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "4888"; repFamily "ERV1"; repLeft "4125"; repStart "-1870"; chr5 rmsk exon 85811943 85812585 8523 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "4124"; repFamily "ERV1"; repLeft "3500"; repStart "-2634"; chr5 rmsk exon 85813597 85814668 4801 - . gene_id "MER4B_5q14.3"; transcript_id "MER4B_5q14.3"; locus "MER4B_5q14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0176"; repClass "LTR"; repEnd "3576"; repFamily "ERV1"; repLeft "2401"; repStart "-3182"; ### ERVLE_5q14.3c ### chr5 rmsk gene 85870660 85874930 . + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1414"; model_cov "3241"; model_pct "57.2"; chr5 rmsk exon 85870660 85871037 444 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "753"; repFamily "ERVL"; repLeft "-4914"; repStart "374"; chr5 rmsk exon 85871100 85871338 250 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "1348"; repFamily "ERVL"; repLeft "-4319"; repStart "1099"; chr5 rmsk exon 85871462 85872133 1326 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "2179"; repFamily "ERVL"; repLeft "-3488"; repStart "1481"; chr5 rmsk exon 85872161 85872433 533 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "2657"; repFamily "ERVL"; repLeft "-3010"; repStart "2380"; chr5 rmsk exon 85873045 85873680 1396 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "3756"; repFamily "ERVL"; repLeft "-1911"; repStart "3072"; chr5 rmsk exon 85873659 85873972 674 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "-1533"; repStart "3694"; chr5 rmsk exon 85874001 85874233 353 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "4449"; repFamily "ERVL"; repLeft "-1218"; repStart "4215"; chr5 rmsk exon 85874643 85874930 353 + . gene_id "ERVLE_5q14.3c"; transcript_id "ERVLE_5q14.3c"; locus "ERVLE_5q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1414"; repClass "LTR"; repEnd "4730"; repFamily "ERVL"; repLeft "-937"; repStart "4450"; ### ERV316A3_5q14.3d ### chr5 rmsk gene 85934428 85938321 . + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1059"; model_cov "2868"; model_pct "54.9"; chr5 rmsk exon 85934428 85934601 307 + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1059"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "-4845"; repStart "207"; chr5 rmsk exon 85934732 85934944 1525 + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1059"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "-4090"; repStart "924"; chr5 rmsk exon 85935366 85937292 1525 + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1059"; repClass "LTR"; repEnd "3070"; repFamily "ERVL"; repLeft "-2156"; repStart "1137"; chr5 rmsk exon 85937749 85937997 591 + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1059"; repClass "LTR"; repEnd "3327"; repFamily "ERVL"; repLeft "-1899"; repStart "3073"; chr5 rmsk exon 85938039 85938321 748 + . gene_id "ERV316A3_5q14.3d"; transcript_id "ERV316A3_5q14.3d"; locus "ERV316A3_5q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1059"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "-1224"; repStart "3707"; ### HERVL40_5q14.3b ### chr5 rmsk gene 86148137 86149506 . + . gene_id "HERVL40_5q14.3b"; transcript_id "HERVL40_5q14.3b"; locus "HERVL40_5q14.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0159"; model_cov "647"; model_pct "11.7"; chr5 rmsk exon 86148137 86148278 697 + . gene_id "HERVL40_5q14.3b"; transcript_id "HERVL40_5q14.3b"; locus "HERVL40_5q14.3b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0159"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "374"; chr5 rmsk exon 86148280 86148536 786 + . gene_id "HERVL40_5q14.3b"; transcript_id "HERVL40_5q14.3b"; locus "HERVL40_5q14.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0159"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-5270"; repStart "1"; chr5 rmsk exon 86148619 86148959 912 + . gene_id "HERVL40_5q14.3b"; transcript_id "HERVL40_5q14.3b"; locus "HERVL40_5q14.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0159"; repClass "LTR"; repEnd "722"; repFamily "ERVL"; repLeft "-4808"; repStart "400"; chr5 rmsk exon 86149441 86149506 286 + . gene_id "HERVL40_5q14.3b"; transcript_id "HERVL40_5q14.3b"; locus "HERVL40_5q14.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0159"; repClass "LTR"; repEnd "1087"; repFamily "ERVL"; repLeft "-4443"; repStart "1021"; ### ERVLE_5q14.3d ### chr5 rmsk gene 86150931 86152369 . - . gene_id "ERVLE_5q14.3d"; transcript_id "ERVLE_5q14.3d"; locus "ERVLE_5q14.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1415"; model_cov "922"; model_pct "16.3"; chr5 rmsk exon 86150931 86151304 530 - . gene_id "ERVLE_5q14.3d"; transcript_id "ERVLE_5q14.3d"; locus "ERVLE_5q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1415"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "3813"; repStart "-1470"; chr5 rmsk exon 86151689 86151858 419 - . gene_id "ERVLE_5q14.3d"; transcript_id "ERVLE_5q14.3d"; locus "ERVLE_5q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1415"; repClass "LTR"; repEnd "3292"; repFamily "ERVL"; repLeft "3109"; repStart "-2375"; chr5 rmsk exon 86152018 86152369 690 - . gene_id "ERVLE_5q14.3d"; transcript_id "ERVLE_5q14.3d"; locus "ERVLE_5q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1415"; repClass "LTR"; repEnd "2905"; repFamily "ERVL"; repLeft "2550"; repStart "-2762"; ### HERVL_5q14.3c ### chr5 rmsk gene 86454741 86460142 . + . gene_id "HERVL_5q14.3c"; transcript_id "HERVL_5q14.3c"; locus "HERVL_5q14.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0525"; model_cov "4864"; model_pct "86.0"; chr5 rmsk exon 86454741 86455140 2906 + . gene_id "HERVL_5q14.3c"; transcript_id "HERVL_5q14.3c"; locus "HERVL_5q14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0525"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr5 rmsk exon 86455231 86455255 235 + . gene_id "HERVL_5q14.3c"; transcript_id "HERVL_5q14.3c"; locus "HERVL_5q14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0525"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-42"; repStart "378"; chr5 rmsk exon 86455311 86455343 280 + . gene_id "HERVL_5q14.3c"; transcript_id "HERVL_5q14.3c"; locus "HERVL_5q14.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0525"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "404"; chr5 rmsk exon 86455348 86460142 36993 + . gene_id "HERVL_5q14.3c"; transcript_id "HERVL_5q14.3c"; locus "HERVL_5q14.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0525"; repClass "LTR"; repEnd "4865"; repFamily "ERVL"; repLeft "-789"; repStart "1"; ### HERVEA_5q14.3 ### chr5 rmsk gene 86460144 86461981 . + . gene_id "HERVEA_5q14.3"; transcript_id "HERVEA_5q14.3"; locus "HERVEA_5q14.3"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0036"; model_cov "1366"; model_pct "17.4"; chr5 rmsk exon 86460144 86460593 2260 + . gene_id "HERVEA_5q14.3"; transcript_id "HERVEA_5q14.3"; locus "HERVEA_5q14.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0036"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 86460594 86461981 4058 + . gene_id "HERVEA_5q14.3"; transcript_id "HERVEA_5q14.3"; locus "HERVEA_5q14.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0036"; repClass "LTR"; repEnd "1367"; repFamily "ERV1"; repLeft "-6480"; repStart "1"; ### HERVE_5q14.3a ### chr5 rmsk gene 86461981 86465707 . + . gene_id "HERVE_5q14.3a"; transcript_id "HERVE_5q14.3a"; locus "HERVE_5q14.3a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0048"; model_cov "3220"; model_pct "41.2"; chr5 rmsk exon 86461981 86464657 13937 + . gene_id "HERVE_5q14.3a"; transcript_id "HERVE_5q14.3a"; locus "HERVE_5q14.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0048"; repClass "LTR"; repEnd "5617"; repFamily "ERV1"; repLeft "-2196"; repStart "2936"; chr5 rmsk exon 86464713 86465251 3091 + . gene_id "HERVE_5q14.3a"; transcript_id "HERVE_5q14.3a"; locus "HERVE_5q14.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0048"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "7273"; chr5 rmsk exon 86465252 86465707 2371 + . gene_id "HERVE_5q14.3a"; transcript_id "HERVE_5q14.3a"; locus "HERVE_5q14.3a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0048"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_5q14.3d ### chr5 rmsk gene 86465708 86468278 . + . gene_id "HERVL_5q14.3d"; transcript_id "HERVL_5q14.3d"; locus "HERVL_5q14.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0526"; model_cov "792"; model_pct "14.0"; chr5 rmsk exon 86465708 86465945 1683 + . gene_id "HERVL_5q14.3d"; transcript_id "HERVL_5q14.3d"; locus "HERVL_5q14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0526"; repClass "LTR"; repEnd "5111"; repFamily "ERVL"; repLeft "-543"; repStart "4863"; chr5 rmsk exon 86467246 86467780 4128 + . gene_id "HERVL_5q14.3d"; transcript_id "HERVL_5q14.3d"; locus "HERVL_5q14.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0526"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5109"; chr5 rmsk exon 86467782 86468278 3118 + . gene_id "HERVL_5q14.3d"; transcript_id "HERVL_5q14.3d"; locus "HERVL_5q14.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0526"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVE_5q14.3b ### chr5 rmsk gene 86565179 86571036 . - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0049"; model_cov "3253"; model_pct "41.6"; chr5 rmsk exon 86565179 86565364 1355 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chr5 rmsk exon 86565365 86565531 402 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "41"; repStart "-288"; chr5 rmsk exon 86565861 86567064 8280 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "5740"; repFamily "ERV1"; repLeft "4535"; repStart "-2073"; chr5 rmsk exon 86567065 86568343 8080 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "4254"; repFamily "ERV1"; repLeft "3001"; repStart "-3559"; chr5 rmsk exon 86568331 86568575 2315 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "878"; repFamily "ERV1"; repLeft "636"; repStart "-6935"; chr5 rmsk exon 86570088 86570248 2315 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "464"; repStart "-7178"; chr5 rmsk exon 86570295 86570683 2308 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-33"; repStart "-7464"; chr5 rmsk exon 86570684 86570869 1098 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chr5 rmsk exon 86570871 86571036 407 - . gene_id "HERVE_5q14.3b"; transcript_id "HERVE_5q14.3b"; locus "HERVE_5q14.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0049"; repClass "LTR"; repEnd "212"; repFamily "ERV1"; repLeft "41"; repStart "-289"; ### HERVL40_5q14.3c ### chr5 rmsk gene 86879051 86882634 . - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0160"; model_cov "1698"; model_pct "30.7"; chr5 rmsk exon 86879051 86879305 879 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "206"; repStart "0"; chr5 rmsk exon 86879306 86879633 2554 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "4192"; repFamily "ERVL"; repLeft "3865"; repStart "-1338"; chr5 rmsk exon 86879927 86880339 2554 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "3864"; repFamily "ERVL"; repLeft "3451"; repStart "-1666"; chr5 rmsk exon 86880359 86880501 493 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "3308"; repFamily "ERVL"; repLeft "3167"; repStart "-2222"; chr5 rmsk exon 86880557 86880969 835 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "2662"; repStart "-2420"; chr5 rmsk exon 86881077 86881227 412 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "1446"; repStart "-3936"; chr5 rmsk exon 86881674 86881889 780 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "1147"; repFamily "ERVL"; repLeft "926"; repStart "-4383"; chr5 rmsk exon 86882203 86882634 1617 - . gene_id "HERVL40_5q14.3c"; transcript_id "HERVL40_5q14.3c"; locus "HERVL40_5q14.3c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0160"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "1"; repStart "-13"; ### ERV316A3_5q14.3e ### chr5 rmsk gene 86999875 87003125 . - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1060"; model_cov "2339"; model_pct "44.8"; chr5 rmsk exon 86999875 86999987 404 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "321"; repStart "-2"; chr5 rmsk exon 87000005 87000290 911 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "1"; repStart "-145"; chr5 rmsk exon 87000310 87001120 1311 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4395"; repStart "-20"; chr5 rmsk exon 87001312 87001637 1518 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "4064"; repStart "-829"; chr5 rmsk exon 87001934 87002337 1518 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "3626"; repStart "-1163"; chr5 rmsk exon 87002350 87003125 1354 - . gene_id "ERV316A3_5q14.3e"; transcript_id "ERV316A3_5q14.3e"; locus "ERV316A3_5q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1060"; repClass "LTR"; repEnd "3571"; repFamily "ERVL"; repLeft "2813"; repStart "-1655"; ### HERVL_5q14.3e ### chr5 rmsk gene 87047284 87051798 . - . gene_id "HERVL_5q14.3e"; transcript_id "HERVL_5q14.3e"; locus "HERVL_5q14.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0527"; model_cov "3165"; model_pct "56.0"; chr5 rmsk exon 87047284 87047545 1828 - . gene_id "HERVL_5q14.3e"; transcript_id "HERVL_5q14.3e"; locus "HERVL_5q14.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0527"; repClass "LTR"; repEnd "283"; repFamily "ERVL"; repLeft "16"; repStart "-161"; chr5 rmsk exon 87047553 87048743 23579 - . gene_id "HERVL_5q14.3e"; transcript_id "HERVL_5q14.3e"; locus "HERVL_5q14.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0527"; repClass "LTR"; repEnd "5631"; repFamily "ERVL"; repLeft "4443"; repStart "-23"; chr5 rmsk exon 87049830 87051798 23579 - . gene_id "HERVL_5q14.3e"; transcript_id "HERVL_5q14.3e"; locus "HERVL_5q14.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0527"; repClass "LTR"; repEnd "4442"; repFamily "ERVL"; repLeft "2465"; repStart "-1212"; ### ERVLB4_5q14.3d ### chr5 rmsk gene 87419106 87422676 . - . gene_id "ERVLB4_5q14.3d"; transcript_id "ERVLB4_5q14.3d"; locus "ERVLB4_5q14.3d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0642"; model_cov "2055"; model_pct "36.0"; chr5 rmsk exon 87419106 87419563 1127 - . gene_id "ERVLB4_5q14.3d"; transcript_id "ERVLB4_5q14.3d"; locus "ERVLB4_5q14.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0642"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "28"; repStart "-2"; chr5 rmsk exon 87419571 87420329 4065 - . gene_id "ERVLB4_5q14.3d"; transcript_id "ERVLB4_5q14.3d"; locus "ERVLB4_5q14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0642"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "4919"; repStart "-4"; chr5 rmsk exon 87420453 87422262 6982 - . gene_id "ERVLB4_5q14.3d"; transcript_id "ERVLB4_5q14.3d"; locus "ERVLB4_5q14.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0642"; repClass "LTR"; repEnd "1404"; repFamily "ERVL"; repLeft "140"; repStart "-4310"; chr5 rmsk exon 87422273 87422676 1234 - . gene_id "ERVLB4_5q14.3d"; transcript_id "ERVLB4_5q14.3d"; locus "ERVLB4_5q14.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0642"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "94"; repStart "-56"; ### HML3_5q14.3a ### chr5 rmsk gene 87510331 87516126 . + . gene_id "HML3_5q14.3a"; transcript_id "HML3_5q14.3a"; locus "HML3_5q14.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0094"; model_cov "5293"; model_pct "87.9"; chr5 rmsk exon 87510331 87510843 4190 + . gene_id "HML3_5q14.3a"; transcript_id "HML3_5q14.3a"; locus "HML3_5q14.3a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0094"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5 rmsk exon 87510844 87516126 43299 + . gene_id "HML3_5q14.3a"; transcript_id "HML3_5q14.3a"; locus "HML3_5q14.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0094"; repClass "LTR"; repEnd "5294"; repFamily "ERVK"; repLeft "-727"; repStart "1"; ### HML3_5q14.3b ### chr5 rmsk gene 87519088 87520375 . + . gene_id "HML3_5q14.3b"; transcript_id "HML3_5q14.3b"; locus "HML3_5q14.3b"; category "unknown"; intModel "HERVK9-int"; locid "HERVK9-int_0095"; model_cov "724"; model_pct "12.0"; chr5 rmsk exon 87519088 87519239 1262 + . gene_id "HML3_5q14.3b"; transcript_id "HML3_5q14.3b"; locus "HML3_5q14.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0095"; repClass "LTR"; repEnd "5432"; repFamily "ERVK"; repLeft "-589"; repStart "5281"; chr5 rmsk exon 87519241 87519410 1342 + . gene_id "HML3_5q14.3b"; transcript_id "HML3_5q14.3b"; locus "HML3_5q14.3b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0095"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "-47"; repStart "295"; chr5 rmsk exon 87519416 87519866 1857 + . gene_id "HML3_5q14.3b"; transcript_id "HML3_5q14.3b"; locus "HML3_5q14.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0095"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5448"; chr5 rmsk exon 87519867 87520375 4252 + . gene_id "HML3_5q14.3b"; transcript_id "HML3_5q14.3b"; locus "HML3_5q14.3b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0095"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### ERVLE_5q14.3e ### chr5 rmsk gene 87553205 87556391 . - . gene_id "ERVLE_5q14.3e"; transcript_id "ERVLE_5q14.3e"; locus "ERVLE_5q14.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1416"; model_cov "904"; model_pct "16.0"; chr5 rmsk exon 87553205 87553652 2019 - . gene_id "ERVLE_5q14.3e"; transcript_id "ERVLE_5q14.3e"; locus "ERVLE_5q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1416"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4255"; repStart "-949"; chr5 rmsk exon 87555959 87556173 1050 - . gene_id "ERVLE_5q14.3e"; transcript_id "ERVLE_5q14.3e"; locus "ERVLE_5q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1416"; repClass "LTR"; repEnd "4143"; repFamily "ERVL"; repLeft "3923"; repStart "-1524"; chr5 rmsk exon 87556181 87556391 868 - . gene_id "ERVLE_5q14.3e"; transcript_id "ERVLE_5q14.3e"; locus "ERVLE_5q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1416"; repClass "LTR"; repEnd "3773"; repFamily "ERVL"; repLeft "3552"; repStart "-1894"; ### HERVL_5q14.3f ### chr5 rmsk gene 87589074 87595553 . - . gene_id "HERVL_5q14.3f"; transcript_id "HERVL_5q14.3f"; locus "HERVL_5q14.3f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0528"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 87589074 87589460 2598 - . gene_id "HERVL_5q14.3f"; transcript_id "HERVL_5q14.3f"; locus "HERVL_5q14.3f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0528"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "10"; repStart "-40"; chr5 rmsk exon 87589461 87595111 43690 - . gene_id "HERVL_5q14.3f"; transcript_id "HERVL_5q14.3f"; locus "HERVL_5q14.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0528"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 87595112 87595553 2861 - . gene_id "HERVL_5q14.3f"; transcript_id "HERVL_5q14.3f"; locus "HERVL_5q14.3f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0528"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP1_5q14.3 ### chr5 rmsk gene 87713694 87722107 . - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0074"; model_cov "6257"; model_pct "99.9"; chr5 rmsk exon 87713694 87714383 5296 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 87714384 87715042 41977 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5614"; repStart "0"; chr5 rmsk exon 87715351 87717207 41977 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "5613"; repFamily "ERV1"; repLeft "3700"; repStart "-650"; chr5 rmsk exon 87717504 87718304 41977 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "3699"; repFamily "ERV1"; repLeft "2901"; repStart "-2564"; chr5 rmsk exon 87718643 87721422 41977 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "2900"; repFamily "ERV1"; repLeft "3"; repStart "-3363"; chr5 rmsk exon 87721425 87722107 5262 - . gene_id "HUERSP1_5q14.3"; transcript_id "HUERSP1_5q14.3"; locus "HUERSP1_5q14.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0074"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_5q14.3f ### chr5 rmsk gene 87987779 87990484 . + . gene_id "ERV316A3_5q14.3f"; transcript_id "ERV316A3_5q14.3f"; locus "ERV316A3_5q14.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1062"; model_cov "1392"; model_pct "26.6"; chr5 rmsk exon 87987779 87988133 1344 + . gene_id "ERV316A3_5q14.3f"; transcript_id "ERV316A3_5q14.3f"; locus "ERV316A3_5q14.3f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1062"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "-80"; repStart "1"; chr5 rmsk exon 87988669 87988891 598 + . gene_id "ERV316A3_5q14.3f"; transcript_id "ERV316A3_5q14.3f"; locus "ERV316A3_5q14.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1062"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "-4752"; repStart "235"; chr5 rmsk exon 87989345 87990484 2646 + . gene_id "ERV316A3_5q14.3f"; transcript_id "ERV316A3_5q14.3f"; locus "ERV316A3_5q14.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1062"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "-2624"; repStart "1449"; ### HERVE_5q14.3c ### chr5 rmsk gene 88188620 88190729 . - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0050"; model_cov "1753"; model_pct "22.4"; chr5 rmsk exon 88188620 88188831 1275 - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0050"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "290"; repStart "0"; chr5 rmsk exon 88188975 88189072 397 - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0050"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "7714"; repStart "0"; chr5 rmsk exon 88189045 88189105 318 - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0050"; repClass "LTR"; repEnd "6444"; repFamily "ERV1"; repLeft "6384"; repStart "-1369"; chr5 rmsk exon 88189108 88189198 539 - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0050"; repClass "LTR"; repEnd "6005"; repFamily "ERV1"; repLeft "5915"; repStart "-1808"; chr5 rmsk exon 88189236 88190729 11845 - . gene_id "HERVE_5q14.3c"; transcript_id "HERVE_5q14.3c"; locus "HERVE_5q14.3c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0050"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "4318"; repStart "-1991"; ### ERVLE_5q14.3f ### chr5 rmsk gene 88639693 88642676 . - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1418"; model_cov "2651"; model_pct "46.8"; chr5 rmsk exon 88639693 88640748 2099 - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1418"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "3695"; repStart "-763"; chr5 rmsk exon 88641242 88641332 290 - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1418"; repClass "LTR"; repEnd "1522"; repFamily "ERVL"; repLeft "1432"; repStart "-4145"; chr5 rmsk exon 88641320 88641993 2082 - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1418"; repClass "LTR"; repEnd "1355"; repFamily "ERVL"; repLeft "669"; repStart "-4312"; chr5 rmsk exon 88642027 88642280 576 - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1418"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "314"; repStart "-5094"; chr5 rmsk exon 88642267 88642676 727 - . gene_id "ERVLE_5q14.3f"; transcript_id "ERVLE_5q14.3f"; locus "ERVLE_5q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1418"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "40"; repStart "-5220"; ### HERVL40_5q14.3d ### chr5 rmsk gene 88706408 88709520 . - . gene_id "HERVL40_5q14.3d"; transcript_id "HERVL40_5q14.3d"; locus "HERVL40_5q14.3d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0161"; model_cov "1932"; model_pct "34.9"; chr5 rmsk exon 88706408 88707864 5263 - . gene_id "HERVL40_5q14.3d"; transcript_id "HERVL40_5q14.3d"; locus "HERVL40_5q14.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0161"; repClass "LTR"; repEnd "4257"; repFamily "ERVL"; repLeft "2745"; repStart "-1273"; chr5 rmsk exon 88708052 88708281 750 - . gene_id "HERVL40_5q14.3d"; transcript_id "HERVL40_5q14.3d"; locus "HERVL40_5q14.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0161"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "1362"; repStart "-3932"; chr5 rmsk exon 88708670 88708844 768 - . gene_id "HERVL40_5q14.3d"; transcript_id "HERVL40_5q14.3d"; locus "HERVL40_5q14.3d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0161"; repClass "LTR"; repEnd "1119"; repFamily "ERVL"; repLeft "935"; repStart "-4411"; chr5 rmsk exon 88709152 88709520 1807 - . gene_id "HERVL40_5q14.3d"; transcript_id "HERVL40_5q14.3d"; locus "HERVL40_5q14.3d"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0161"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "76"; repStart "-25"; ### ERVLB4_5q14.3e ### chr5 rmsk gene 89104385 89106374 . - . gene_id "ERVLB4_5q14.3e"; transcript_id "ERVLB4_5q14.3e"; locus "ERVLB4_5q14.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0643"; model_cov "1490"; model_pct "26.1"; chr5 rmsk exon 89104385 89104451 1510 - . gene_id "ERVLB4_5q14.3e"; transcript_id "ERVLB4_5q14.3e"; locus "ERVLB4_5q14.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0643"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "493"; repStart "-2"; chr5 rmsk exon 89104515 89104925 1510 - . gene_id "ERVLB4_5q14.3e"; transcript_id "ERVLB4_5q14.3e"; locus "ERVLB4_5q14.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0643"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "3"; repStart "-64"; chr5 rmsk exon 89104928 89105177 6322 - . gene_id "ERVLB4_5q14.3e"; transcript_id "ERVLB4_5q14.3e"; locus "ERVLB4_5q14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0643"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5374"; repStart "0"; chr5 rmsk exon 89105208 89106374 6322 - . gene_id "ERVLB4_5q14.3e"; transcript_id "ERVLB4_5q14.3e"; locus "ERVLB4_5q14.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0643"; repClass "LTR"; repEnd "5373"; repFamily "ERVL"; repLeft "4223"; repStart "-341"; ### ERV316A3_5q14.3g ### chr5 rmsk gene 89487892 89495921 . + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1064"; model_cov "5068"; model_pct "97.0"; chr5 rmsk exon 89487892 89488243 1053 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-96"; repStart "1"; chr5 rmsk exon 89488329 89488897 1703 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "678"; repFamily "ERVL"; repLeft "-4548"; repStart "51"; chr5 rmsk exon 89489260 89489786 1703 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "1228"; repFamily "ERVL"; repLeft "-3998"; repStart "679"; chr5 rmsk exon 89490162 89492365 5946 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "3559"; repFamily "ERVL"; repLeft "-1667"; repStart "1324"; chr5 rmsk exon 89492750 89494021 4561 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "4821"; repFamily "ERVL"; repLeft "-405"; repStart "3568"; chr5 rmsk exon 89495217 89495582 4561 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4822"; chr5 rmsk exon 89495588 89495921 1095 + . gene_id "ERV316A3_5q14.3g"; transcript_id "ERV316A3_5q14.3g"; locus "ERV316A3_5q14.3g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1064"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "-124"; repStart "7"; ### ERVLE_5q14.3g ### chr5 rmsk gene 89517918 89519053 . - . gene_id "ERVLE_5q14.3g"; transcript_id "ERVLE_5q14.3g"; locus "ERVLE_5q14.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1419"; model_cov "1001"; model_pct "17.7"; chr5 rmsk exon 89517918 89518686 727 - . gene_id "ERVLE_5q14.3g"; transcript_id "ERVLE_5q14.3g"; locus "ERVLE_5q14.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1419"; repClass "LTR"; repEnd "5148"; repFamily "ERVL"; repLeft "4466"; repStart "-519"; chr5 rmsk exon 89518746 89519053 459 - . gene_id "ERVLE_5q14.3g"; transcript_id "ERVLE_5q14.3g"; locus "ERVLE_5q14.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1419"; repClass "LTR"; repEnd "3928"; repFamily "ERVL"; repLeft "3609"; repStart "-1739"; ### MER41_5q14.3a ### chr5 rmsk gene 89917678 89919657 . - . gene_id "MER41_5q14.3a"; transcript_id "MER41_5q14.3a"; locus "MER41_5q14.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0182"; model_cov "1554"; model_pct "26.1"; chr5 rmsk exon 89917678 89918143 3478 - . gene_id "MER41_5q14.3a"; transcript_id "MER41_5q14.3a"; locus "MER41_5q14.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0182"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr5 rmsk exon 89918144 89919657 10237 - . gene_id "MER41_5q14.3a"; transcript_id "MER41_5q14.3a"; locus "MER41_5q14.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0182"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4390"; repStart "-2"; ### ERV316A3_5q14.3h ### chr5 rmsk gene 89990585 89994670 . - . gene_id "ERV316A3_5q14.3h"; transcript_id "ERV316A3_5q14.3h"; locus "ERV316A3_5q14.3h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1065"; model_cov "4088"; model_pct "78.2"; chr5 rmsk exon 89990585 89994434 11479 - . gene_id "ERV316A3_5q14.3h"; transcript_id "ERV316A3_5q14.3h"; locus "ERV316A3_5q14.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1065"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "1359"; repStart "0"; chr5 rmsk exon 89994471 89994670 800 - . gene_id "ERV316A3_5q14.3h"; transcript_id "ERV316A3_5q14.3h"; locus "ERV316A3_5q14.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1065"; repClass "LTR"; repEnd "1054"; repFamily "ERVL"; repLeft "833"; repStart "-4172"; ### ERV316A3_5q14.3i ### chr5 rmsk gene 90251188 90252269 . - . gene_id "ERV316A3_5q14.3i"; transcript_id "ERV316A3_5q14.3i"; locus "ERV316A3_5q14.3i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1066"; model_cov "1085"; model_pct "20.8"; chr5 rmsk exon 90251188 90252269 1686 - . gene_id "ERV316A3_5q14.3i"; transcript_id "ERV316A3_5q14.3i"; locus "ERV316A3_5q14.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1066"; repClass "LTR"; repEnd "2575"; repFamily "ERVL"; repLeft "1490"; repStart "-2651"; ### ERV316A3_5q14.3j ### chr5 rmsk gene 90670326 90671542 . + . gene_id "ERV316A3_5q14.3j"; transcript_id "ERV316A3_5q14.3j"; locus "ERV316A3_5q14.3j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1067"; model_cov "1131"; model_pct "21.6"; chr5 rmsk exon 90670326 90670530 510 + . gene_id "ERV316A3_5q14.3j"; transcript_id "ERV316A3_5q14.3j"; locus "ERV316A3_5q14.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1067"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1456"; repStart "3557"; chr5 rmsk exon 90670593 90671542 1247 + . gene_id "ERV316A3_5q14.3j"; transcript_id "ERV316A3_5q14.3j"; locus "ERV316A3_5q14.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1067"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-380"; repStart "3928"; ### ERVLE_5q14.3h ### chr5 rmsk gene 91228239 91228982 . - . gene_id "ERVLE_5q14.3h"; transcript_id "ERVLE_5q14.3h"; locus "ERVLE_5q14.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1420"; model_cov "761"; model_pct "13.4"; chr5 rmsk exon 91228239 91228982 1267 - . gene_id "ERVLE_5q14.3h"; transcript_id "ERVLE_5q14.3h"; locus "ERVLE_5q14.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1420"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "4379"; repStart "-527"; ### HUERSP3_5q14.3 ### chr5 rmsk gene 91445972 91447921 . - . gene_id "HUERSP3_5q14.3"; transcript_id "HUERSP3_5q14.3"; locus "HUERSP3_5q14.3"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0068"; model_cov "1982"; model_pct "22.2"; chr5 rmsk exon 91445972 91447921 13700 - . gene_id "HUERSP3_5q14.3"; transcript_id "HUERSP3_5q14.3"; locus "HUERSP3_5q14.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0068"; repClass "LTR"; repEnd "6102"; repFamily "ERV1"; repLeft "4120"; repStart "-2817"; ### MER41_5q14.3b ### chr5 rmsk gene 91592678 91593519 . - . gene_id "MER41_5q14.3b"; transcript_id "MER41_5q14.3b"; locus "MER41_5q14.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0183"; model_cov "611"; model_pct "10.3"; chr5 rmsk exon 91592678 91593073 1571 - . gene_id "MER41_5q14.3b"; transcript_id "MER41_5q14.3b"; locus "MER41_5q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0183"; repClass "LTR"; repEnd "1452"; repFamily "ERV1"; repLeft "1181"; repStart "-4494"; chr5 rmsk exon 91593194 91593519 1970 - . gene_id "MER41_5q14.3b"; transcript_id "MER41_5q14.3b"; locus "MER41_5q14.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0183"; repClass "LTR"; repEnd "1063"; repFamily "ERV1"; repLeft "723"; repStart "-4883"; ### ERVLE_5q14.3i ### chr5 rmsk gene 91881023 91882036 . - . gene_id "ERVLE_5q14.3i"; transcript_id "ERVLE_5q14.3i"; locus "ERVLE_5q14.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1421"; model_cov "1061"; model_pct "18.7"; chr5 rmsk exon 91881023 91882036 1424 - . gene_id "ERVLE_5q14.3i"; transcript_id "ERVLE_5q14.3i"; locus "ERVLE_5q14.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1421"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "3330"; repStart "-1276"; ### HERVL_5q14.3g ### chr5 rmsk gene 92060113 92065277 . + . gene_id "HERVL_5q14.3g"; transcript_id "HERVL_5q14.3g"; locus "HERVL_5q14.3g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0530"; model_cov "4075"; model_pct "72.1"; chr5 rmsk exon 92060113 92060344 29872 + . gene_id "HERVL_5q14.3g"; transcript_id "HERVL_5q14.3g"; locus "HERVL_5q14.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0530"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-3857"; repStart "1577"; chr5 rmsk exon 92060903 92064735 29872 + . gene_id "HERVL_5q14.3g"; transcript_id "HERVL_5q14.3g"; locus "HERVL_5q14.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0530"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "1798"; chr5 rmsk exon 92064736 92065277 1870 + . gene_id "HERVL_5q14.3g"; transcript_id "HERVL_5q14.3g"; locus "HERVL_5q14.3g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0530"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-7"; repStart "-100"; ### ERVLB4_5q14.3f ### chr5 rmsk gene 92163047 92165164 . - . gene_id "ERVLB4_5q14.3f"; transcript_id "ERVLB4_5q14.3f"; locus "ERVLB4_5q14.3f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0644"; model_cov "1630"; model_pct "28.5"; chr5 rmsk exon 92163047 92163467 1708 - . gene_id "ERVLB4_5q14.3f"; transcript_id "ERVLB4_5q14.3f"; locus "ERVLB4_5q14.3f"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0644"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 92163522 92164183 8986 - . gene_id "ERVLB4_5q14.3f"; transcript_id "ERVLB4_5q14.3f"; locus "ERVLB4_5q14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0644"; repClass "LTR"; repEnd "4596"; repFamily "ERVL"; repLeft "3906"; repStart "-1118"; chr5 rmsk exon 92164236 92165164 8986 - . gene_id "ERVLB4_5q14.3f"; transcript_id "ERVLB4_5q14.3f"; locus "ERVLB4_5q14.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0644"; repClass "LTR"; repEnd "3905"; repFamily "ERVL"; repLeft "2965"; repStart "-1809"; ### HERVL_5q14.3h ### chr5 rmsk gene 92215209 92221650 . + . gene_id "HERVL_5q14.3h"; transcript_id "HERVL_5q14.3h"; locus "HERVL_5q14.3h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0531"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 92215209 92215633 2487 + . gene_id "HERVL_5q14.3h"; transcript_id "HERVL_5q14.3h"; locus "HERVL_5q14.3h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0531"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 92215634 92221263 43730 + . gene_id "HERVL_5q14.3h"; transcript_id "HERVL_5q14.3h"; locus "HERVL_5q14.3h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0531"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 92221264 92221650 2657 + . gene_id "HERVL_5q14.3h"; transcript_id "HERVL_5q14.3h"; locus "HERVL_5q14.3h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0531"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### HERVH_5q14.3b ### chr5 rmsk gene 92823742 92829706 . + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0485"; model_cov "4816"; model_pct "62.4"; chr5 rmsk exon 92823742 92824175 2639 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 92824176 92827377 16790 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr5 rmsk exon 92827357 92827504 937 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 92827495 92827997 3354 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 92828000 92828682 4237 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 92828684 92828901 1398 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 92828900 92829174 1802 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "7613"; repFamily "ERV1"; repLeft "-100"; repStart "7322"; chr5 rmsk exon 92829273 92829706 2720 + . gene_id "HERVH_5q14.3b"; transcript_id "HERVH_5q14.3b"; locus "HERVH_5q14.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0485"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q15a ### chr5 rmsk gene 93772880 93773577 . + . gene_id "ERVLE_5q15a"; transcript_id "ERVLE_5q15a"; locus "ERVLE_5q15a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1424"; model_cov "717"; model_pct "12.7"; chr5 rmsk exon 93772880 93773577 2822 + . gene_id "ERVLE_5q15a"; transcript_id "ERVLE_5q15a"; locus "ERVLE_5q15a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1424"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-477"; repStart "4473"; ### MER4B_5q15 ### chr5 rmsk gene 94016254 94017183 . + . gene_id "MER4B_5q15"; transcript_id "MER4B_5q15"; locus "MER4B_5q15"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0177"; model_cov "939"; model_pct "13.9"; chr5 rmsk exon 94016254 94017183 1876 + . gene_id "MER4B_5q15"; transcript_id "MER4B_5q15"; locus "MER4B_5q15"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0177"; repClass "LTR"; repEnd "4465"; repFamily "ERV1"; repLeft "-2293"; repStart "3526"; ### MER41_5q15a ### chr5 rmsk gene 94039191 94045415 . + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0184"; model_cov "6906"; model_pct "100.0"; chr5 rmsk exon 94039191 94039742 4135 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0184"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 94039743 94039818 322 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0184"; repClass "LTR"; repEnd "-1708"; repFamily "ERV1"; repLeft "-7654"; repStart "-1809"; chr5 rmsk exon 94039829 94040353 7379 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0184"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "-5425"; repStart "1"; chr5 rmsk exon 94040640 94042314 11016 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0184"; repClass "LTR"; repEnd "4076"; repFamily "ERV1"; repLeft "-1870"; repStart "1453"; chr5 rmsk exon 94042605 94044576 12614 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0184"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2282"; chr5 rmsk exon 94044577 94044881 4136 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0184"; repClass "LTR"; repEnd "306"; repFamily "ERV1"; repLeft "-248"; repStart "1"; chr5 rmsk exon 94045137 94045415 4136 + . gene_id "MER41_5q15a"; transcript_id "MER41_5q15a"; locus "MER41_5q15a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0184"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "307"; ### ERVLE_5q15b ### chr5 rmsk gene 94443871 94444658 . + . gene_id "ERVLE_5q15b"; transcript_id "ERVLE_5q15b"; locus "ERVLE_5q15b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1425"; model_cov "780"; model_pct "13.8"; chr5 rmsk exon 94443871 94444658 1808 + . gene_id "ERVLE_5q15b"; transcript_id "ERVLE_5q15b"; locus "ERVLE_5q15b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1425"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-431"; repStart "4456"; ### PABLA_5q15 ### chr5 rmsk gene 94539535 94543159 . + . gene_id "PABLA_5q15"; transcript_id "PABLA_5q15"; locus "PABLA_5q15"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0046"; model_cov "3013"; model_pct "60.1"; chr5 rmsk exon 94539535 94540136 4105 + . gene_id "PABLA_5q15"; transcript_id "PABLA_5q15"; locus "PABLA_5q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0046"; repClass "LTR"; repEnd "-309"; repFamily "ERV1"; repLeft "-5324"; repStart "-930"; chr5 rmsk exon 94540124 94542524 12707 + . gene_id "PABLA_5q15"; transcript_id "PABLA_5q15"; locus "PABLA_5q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0046"; repClass "LTR"; repEnd "1472"; repFamily "ERV1"; repLeft "-3543"; repStart "-615"; chr5 rmsk exon 94542832 94543159 12707 + . gene_id "PABLA_5q15"; transcript_id "PABLA_5q15"; locus "PABLA_5q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0046"; repClass "LTR"; repEnd "4325"; repFamily "ERV1"; repLeft "-690"; repStart "4020"; ### HERVL66_5q15 ### chr5 rmsk gene 95258771 95260799 . + . gene_id "HERVL66_5q15"; transcript_id "HERVL66_5q15"; locus "HERVL66_5q15"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0013"; model_cov "1521"; model_pct "35.1"; chr5 rmsk exon 95258771 95260176 7313 + . gene_id "HERVL66_5q15"; transcript_id "HERVL66_5q15"; locus "HERVL66_5q15"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0013"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "-1"; repStart "2807"; chr5 rmsk exon 95260178 95260799 4402 + . gene_id "HERVL66_5q15"; transcript_id "HERVL66_5q15"; locus "HERVL66_5q15"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0013"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVS71_5q15 ### chr5 rmsk gene 95707337 95712075 . - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0016"; model_cov "4244"; model_pct "47.3"; chr5 rmsk exon 95707337 95707886 4249 - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0016"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 95707887 95708199 2278 - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0016"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr5 rmsk exon 95708197 95709910 12249 - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0016"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "6070"; repStart "-1192"; chr5 rmsk exon 95709910 95710748 3391 - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0016"; repClass "LTR"; repEnd "5673"; repFamily "ERV1"; repLeft "4803"; repStart "-3305"; chr5 rmsk exon 95710731 95712075 9941 - . gene_id "HERVS71_5q15"; transcript_id "HERVS71_5q15"; locus "HERVS71_5q15"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0016"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "1893"; repStart "-5742"; ### ERV316A3_5q15a ### chr5 rmsk gene 96058097 96063559 . + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1069"; model_cov "3973"; model_pct "76.0"; chr5 rmsk exon 96058097 96058512 1248 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr5 rmsk exon 96058609 96058808 471 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "-4666"; repStart "347"; chr5 rmsk exon 96059037 96059276 376 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "855"; repFamily "ERVL"; repLeft "-4371"; repStart "587"; chr5 rmsk exon 96059272 96060780 4164 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "3040"; repFamily "ERVL"; repLeft "-2186"; repStart "1563"; chr5 rmsk exon 96061173 96061393 4164 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "3263"; repFamily "ERVL"; repLeft "-1963"; repStart "3041"; chr5 rmsk exon 96061399 96061644 590 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "3299"; repFamily "ERVL"; repLeft "-1927"; repStart "3034"; chr5 rmsk exon 96061681 96061952 866 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "-1649"; repStart "3160"; chr5 rmsk exon 96061978 96063059 2453 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "5164"; repFamily "ERVL"; repLeft "-62"; repStart "4053"; chr5 rmsk exon 96063132 96063559 1457 + . gene_id "ERV316A3_5q15a"; transcript_id "ERV316A3_5q15a"; locus "ERV316A3_5q15a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1069"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "4"; ### HERVH_5q15a ### chr5 rmsk gene 96166828 96172420 . - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0486"; model_cov "5538"; model_pct "71.8"; chr5 rmsk exon 96166828 96167187 2096 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "7324"; repStart "-4"; chr5 rmsk exon 96167188 96167424 1343 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr5 rmsk exon 96167405 96169074 6467 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "4122"; repStart "-1805"; chr5 rmsk exon 96169074 96169223 938 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 96169218 96171958 14340 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 96171974 96172420 3197 - . gene_id "HERVH_5q15a"; transcript_id "HERVH_5q15a"; locus "HERVH_5q15a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0486"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5q15b ### chr5 rmsk gene 96346470 96347455 . - . gene_id "ERV316A3_5q15b"; transcript_id "ERV316A3_5q15b"; locus "ERV316A3_5q15b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1070"; model_cov "1132"; model_pct "21.7"; chr5 rmsk exon 96346470 96347024 1055 - . gene_id "ERV316A3_5q15b"; transcript_id "ERV316A3_5q15b"; locus "ERV316A3_5q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1070"; repClass "LTR"; repEnd "4297"; repFamily "ERVL"; repLeft "3604"; repStart "-929"; chr5 rmsk exon 96347049 96347455 927 - . gene_id "ERV316A3_5q15b"; transcript_id "ERV316A3_5q15b"; locus "ERV316A3_5q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1070"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "3563"; repStart "-1224"; ### ERVLE_5q15c ### chr5 rmsk gene 96545379 96548743 . - . gene_id "ERVLE_5q15c"; transcript_id "ERVLE_5q15c"; locus "ERVLE_5q15c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1427"; model_cov "2975"; model_pct "52.5"; chr5 rmsk exon 96545379 96546787 4407 - . gene_id "ERVLE_5q15c"; transcript_id "ERVLE_5q15c"; locus "ERVLE_5q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1427"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "2944"; repStart "-1253"; chr5 rmsk exon 96546784 96547136 732 - . gene_id "ERVLE_5q15c"; transcript_id "ERVLE_5q15c"; locus "ERVLE_5q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1427"; repClass "LTR"; repEnd "2754"; repFamily "ERVL"; repLeft "2389"; repStart "-2913"; chr5 rmsk exon 96547670 96548743 1760 - . gene_id "ERVLE_5q15c"; transcript_id "ERVLE_5q15c"; locus "ERVLE_5q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1427"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "1253"; repStart "-3274"; ### ERV316A3_5q15c ### chr5 rmsk gene 97186903 97187859 . + . gene_id "ERV316A3_5q15c"; transcript_id "ERV316A3_5q15c"; locus "ERV316A3_5q15c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1071"; model_cov "777"; model_pct "14.9"; chr5 rmsk exon 97186903 97187639 1473 + . gene_id "ERV316A3_5q15c"; transcript_id "ERV316A3_5q15c"; locus "ERV316A3_5q15c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1071"; repClass "LTR"; repEnd "3768"; repFamily "ERVL"; repLeft "-1458"; repStart "2991"; chr5 rmsk exon 97187700 97187859 602 + . gene_id "ERV316A3_5q15c"; transcript_id "ERV316A3_5q15c"; locus "ERV316A3_5q15c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1071"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "286"; ### HERV9_5q15 ### chr5 rmsk gene 97308763 97318438 . - . gene_id "HERV9_5q15"; transcript_id "HERV9_5q15"; locus "HERV9_5q15"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0057"; model_cov "8316"; model_pct "98.6"; chr5 rmsk exon 97308763 97309444 5263 - . gene_id "HERV9_5q15"; transcript_id "HERV9_5q15"; locus "HERV9_5q15"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0057"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "139"; repStart "0"; chr5 rmsk exon 97309445 97317369 60275 - . gene_id "HERV9_5q15"; transcript_id "HERV9_5q15"; locus "HERV9_5q15"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0057"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "355"; repStart "0"; chr5 rmsk exon 97317370 97317605 1682 - . gene_id "HERV9_5q15"; transcript_id "HERV9_5q15"; locus "HERV9_5q15"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0057"; repClass "LTR"; repEnd "3298"; repFamily "ERV1"; repLeft "3063"; repStart "-5138"; chr5 rmsk exon 97317607 97318438 6275 - . gene_id "HERV9_5q15"; transcript_id "HERV9_5q15"; locus "HERV9_5q15"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0057"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_5q15d ### chr5 rmsk gene 97422345 97426772 . - . gene_id "ERVLE_5q15d"; transcript_id "ERVLE_5q15d"; locus "ERVLE_5q15d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1428"; model_cov "2242"; model_pct "39.6"; chr5 rmsk exon 97422345 97423488 3181 - . gene_id "ERVLE_5q15d"; transcript_id "ERVLE_5q15d"; locus "ERVLE_5q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1428"; repClass "LTR"; repEnd "3231"; repFamily "ERVL"; repLeft "2038"; repStart "-2436"; chr5 rmsk exon 97425239 97426038 1214 - . gene_id "ERVLE_5q15d"; transcript_id "ERVLE_5q15d"; locus "ERVLE_5q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1428"; repClass "LTR"; repEnd "1826"; repFamily "ERVL"; repLeft "993"; repStart "-3841"; chr5 rmsk exon 97426569 97426772 641 - . gene_id "ERVLE_5q15d"; transcript_id "ERVLE_5q15d"; locus "ERVLE_5q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1428"; repClass "LTR"; repEnd "975"; repFamily "ERVL"; repLeft "759"; repStart "-4692"; ### LTR25_5q15a ### chr5 rmsk gene 97465512 97466398 . - . gene_id "LTR25_5q15a"; transcript_id "LTR25_5q15a"; locus "LTR25_5q15a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0042"; model_cov "760"; model_pct "10.6"; chr5 rmsk exon 97465512 97466241 3039 - . gene_id "LTR25_5q15a"; transcript_id "LTR25_5q15a"; locus "LTR25_5q15a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0042"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "3773"; repStart "-2807"; chr5 rmsk exon 97466244 97466398 770 - . gene_id "LTR25_5q15a"; transcript_id "LTR25_5q15a"; locus "LTR25_5q15a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0042"; repClass "LTR"; repEnd "2384"; repFamily "ERV1"; repLeft "2232"; repStart "-4804"; ### ERVLE_5q15e ### chr5 rmsk gene 97761554 97764135 . + . gene_id "ERVLE_5q15e"; transcript_id "ERVLE_5q15e"; locus "ERVLE_5q15e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1429"; model_cov "2480"; model_pct "43.8"; chr5 rmsk exon 97761554 97762817 621 + . gene_id "ERVLE_5q15e"; transcript_id "ERVLE_5q15e"; locus "ERVLE_5q15e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1429"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "-3688"; repStart "675"; chr5 rmsk exon 97762949 97764135 1683 + . gene_id "ERVLE_5q15e"; transcript_id "ERVLE_5q15e"; locus "ERVLE_5q15e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1429"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "-2980"; repStart "1511"; ### MER41_5q15b ### chr5 rmsk gene 97802616 97809144 . - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0186"; model_cov "7970"; model_pct "100.0"; chr5 rmsk exon 97802616 97804918 13769 - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0186"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "2395"; repStart "-1"; chr5 rmsk exon 97805215 97807237 13769 - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0186"; repClass "LTR"; repEnd "3761"; repFamily "ERV1"; repLeft "976"; repStart "-2185"; chr5 rmsk exon 97807347 97808416 4625 - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0186"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "-629"; repStart "-5413"; chr5 rmsk exon 97808703 97808917 4625 - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0186"; repClass "LTR"; repEnd "-516"; repFamily "ERV1"; repLeft "-739"; repStart "-6462"; chr5 rmsk exon 97808912 97809144 524 - . gene_id "MER41_5q15b"; transcript_id "MER41_5q15b"; locus "MER41_5q15b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0186"; repClass "LTR"; repEnd "-893"; repFamily "ERV1"; repLeft "-1143"; repStart "-6839"; ### ERVLE_5q15f ### chr5 rmsk gene 97829046 97830726 . - . gene_id "ERVLE_5q15f"; transcript_id "ERVLE_5q15f"; locus "ERVLE_5q15f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1430"; model_cov "1749"; model_pct "30.9"; chr5 rmsk exon 97829046 97829816 1619 - . gene_id "ERVLE_5q15f"; transcript_id "ERVLE_5q15f"; locus "ERVLE_5q15f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1430"; repClass "LTR"; repEnd "3844"; repFamily "ERVL"; repLeft "3054"; repStart "-1823"; chr5 rmsk exon 97829810 97829981 317 - . gene_id "ERVLE_5q15f"; transcript_id "ERVLE_5q15f"; locus "ERVLE_5q15f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1430"; repClass "LTR"; repEnd "3042"; repFamily "ERVL"; repLeft "2856"; repStart "-2625"; chr5 rmsk exon 97829980 97830726 1260 - . gene_id "ERVLE_5q15f"; transcript_id "ERVLE_5q15f"; locus "ERVLE_5q15f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1430"; repClass "LTR"; repEnd "2794"; repFamily "ERVL"; repLeft "2021"; repStart "-2873"; ### HERVL_5q15 ### chr5 rmsk gene 98029190 98035725 . - . gene_id "HERVL_5q15"; transcript_id "HERVL_5q15"; locus "HERVL_5q15"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0532"; model_cov "5653"; model_pct "100.0"; chr5 rmsk exon 98029190 98029629 3199 - . gene_id "HERVL_5q15"; transcript_id "HERVL_5q15"; locus "HERVL_5q15"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0532"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 98029630 98035274 43231 - . gene_id "HERVL_5q15"; transcript_id "HERVL_5q15"; locus "HERVL_5q15"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0532"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 98035275 98035725 3349 - . gene_id "HERVL_5q15"; transcript_id "HERVL_5q15"; locus "HERVL_5q15"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0532"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_5q15b ### chr5 rmsk gene 98080083 98085315 . + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0487"; model_cov "5089"; model_pct "66.0"; chr5 rmsk exon 98080083 98082484 15036 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "562"; chr5 rmsk exon 98082454 98082612 950 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3128"; chr5 rmsk exon 98082603 98084329 8309 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr5 rmsk exon 98084331 98084542 1254 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 98084543 98084914 2388 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 98084915 98085315 2631 + . gene_id "HERVH_5q15b"; transcript_id "HERVH_5q15b"; locus "HERVH_5q15b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0487"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5q15d ### chr5 rmsk gene 98413130 98415981 . - . gene_id "ERV316A3_5q15d"; transcript_id "ERV316A3_5q15d"; locus "ERV316A3_5q15d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1073"; model_cov "2026"; model_pct "38.8"; chr5 rmsk exon 98413130 98414939 4242 - . gene_id "ERV316A3_5q15d"; transcript_id "ERV316A3_5q15d"; locus "ERV316A3_5q15d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1073"; repClass "LTR"; repEnd "2678"; repFamily "ERVL"; repLeft "909"; repStart "-2548"; chr5 rmsk exon 98415258 98415500 399 - . gene_id "ERV316A3_5q15d"; transcript_id "ERV316A3_5q15d"; locus "ERV316A3_5q15d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1073"; repClass "LTR"; repEnd "535"; repFamily "ERVL"; repLeft "278"; repStart "-4691"; chr5 rmsk exon 98415542 98415981 1308 - . gene_id "ERV316A3_5q15d"; transcript_id "ERV316A3_5q15d"; locus "ERV316A3_5q15d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1073"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVH_5q15c ### chr5 rmsk gene 98434516 98441337 . + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0489"; model_cov "5715"; model_pct "74.1"; chr5 rmsk exon 98434516 98434953 2437 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 98434955 98436084 17376 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "1453"; repFamily "ERV1"; repLeft "-6260"; repStart "2"; chr5 rmsk exon 98436399 98439564 17376 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "5757"; repFamily "ERV1"; repLeft "-1956"; repStart "2513"; chr5 rmsk exon 98439560 98439993 2352 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6516"; chr5 rmsk exon 98439988 98440043 319 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr5 rmsk exon 98440045 98440584 3302 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "-2"; repStart "7173"; chr5 rmsk exon 98440895 98441337 2421 + . gene_id "HERVH_5q15c"; transcript_id "HERVH_5q15c"; locus "HERVH_5q15c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0489"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_5q15e ### chr5 rmsk gene 98486057 98491837 . + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1074"; model_cov "4029"; model_pct "77.1"; chr5 rmsk exon 98486057 98486504 1498 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-1"; repStart "5"; chr5 rmsk exon 98486660 98487781 3176 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "1370"; repFamily "ERVL"; repLeft "-3856"; repStart "197"; chr5 rmsk exon 98487845 98488005 436 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "1633"; repFamily "ERVL"; repLeft "-3593"; repStart "1478"; chr5 rmsk exon 98488043 98488562 5049 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "2265"; repFamily "ERVL"; repLeft "-2961"; repStart "1723"; chr5 rmsk exon 98488908 98490225 5049 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "-1584"; repStart "2266"; chr5 rmsk exon 98491037 98491837 2595 + . gene_id "ERV316A3_5q15e"; transcript_id "ERV316A3_5q15e"; locus "ERV316A3_5q15e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1074"; repClass "LTR"; repEnd "4153"; repFamily "ERVL"; repLeft "-1073"; repStart "3370"; ### ERVLE_5q15g ### chr5 rmsk gene 98653400 98654318 . + . gene_id "ERVLE_5q15g"; transcript_id "ERVLE_5q15g"; locus "ERVLE_5q15g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1431"; model_cov "924"; model_pct "16.3"; chr5 rmsk exon 98653400 98654318 1289 + . gene_id "ERVLE_5q15g"; transcript_id "ERVLE_5q15g"; locus "ERVLE_5q15g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1431"; repClass "LTR"; repEnd "5154"; repFamily "ERVL"; repLeft "-513"; repStart "4230"; ### LTR25_5q15b ### chr5 rmsk gene 98839880 98843293 . - . gene_id "LTR25_5q15b"; transcript_id "LTR25_5q15b"; locus "LTR25_5q15b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0043"; model_cov "3642"; model_pct "50.7"; chr5 rmsk exon 98839880 98840663 6088 - . gene_id "LTR25_5q15b"; transcript_id "LTR25_5q15b"; locus "LTR25_5q15b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0043"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5972"; repStart "-1"; chr5 rmsk exon 98840795 98842787 10302 - . gene_id "LTR25_5q15b"; transcript_id "LTR25_5q15b"; locus "LTR25_5q15b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0043"; repClass "LTR"; repEnd "6399"; repFamily "ERV1"; repLeft "4153"; repStart "-789"; chr5 rmsk exon 98843081 98843293 10302 - . gene_id "LTR25_5q15b"; transcript_id "LTR25_5q15b"; locus "LTR25_5q15b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0043"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "4189"; repStart "-2818"; ### LTR25_5q15c ### chr5 rmsk gene 98843582 98846022 . - . gene_id "LTR25_5q15c"; transcript_id "LTR25_5q15c"; locus "LTR25_5q15c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0044"; model_cov "2916"; model_pct "40.6"; chr5 rmsk exon 98843582 98845415 10302 - . gene_id "LTR25_5q15c"; transcript_id "LTR25_5q15c"; locus "LTR25_5q15c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0044"; repClass "LTR"; repEnd "6797"; repFamily "ERV1"; repLeft "4137"; repStart "-391"; chr5 rmsk exon 98845422 98845601 917 - . gene_id "LTR25_5q15c"; transcript_id "LTR25_5q15c"; locus "LTR25_5q15c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0044"; repClass "LTR"; repEnd "2472"; repFamily "ERV1"; repLeft "2326"; repStart "-4716"; chr5 rmsk exon 98845893 98846022 917 - . gene_id "LTR25_5q15c"; transcript_id "LTR25_5q15c"; locus "LTR25_5q15c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0044"; repClass "LTR"; repEnd "2325"; repFamily "ERV1"; repLeft "2215"; repStart "-4863"; ### ERV316A3_5q21.1a ### chr5 rmsk gene 98944571 98947229 . - . gene_id "ERV316A3_5q21.1a"; transcript_id "ERV316A3_5q21.1a"; locus "ERV316A3_5q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1076"; model_cov "2280"; model_pct "43.6"; chr5 rmsk exon 98944571 98945115 5446 - . gene_id "ERV316A3_5q21.1a"; transcript_id "ERV316A3_5q21.1a"; locus "ERV316A3_5q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1076"; repClass "LTR"; repEnd "2368"; repFamily "ERVL"; repLeft "1896"; repStart "-2858"; chr5 rmsk exon 98945199 98946881 5446 - . gene_id "ERV316A3_5q21.1a"; transcript_id "ERV316A3_5q21.1a"; locus "ERV316A3_5q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1076"; repClass "LTR"; repEnd "1895"; repFamily "ERVL"; repLeft "130"; repStart "-3331"; chr5 rmsk exon 98947178 98947229 5446 - . gene_id "ERV316A3_5q21.1a"; transcript_id "ERV316A3_5q21.1a"; locus "ERV316A3_5q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1076"; repClass "LTR"; repEnd "129"; repFamily "ERVL"; repLeft "86"; repStart "-5097"; ### ERVLE_5q21.1a ### chr5 rmsk gene 99003302 99005978 . + . gene_id "ERVLE_5q21.1a"; transcript_id "ERVLE_5q21.1a"; locus "ERVLE_5q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1432"; model_cov "2628"; model_pct "46.4"; chr5 rmsk exon 99003302 99003874 1729 + . gene_id "ERVLE_5q21.1a"; transcript_id "ERVLE_5q21.1a"; locus "ERVLE_5q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1432"; repClass "LTR"; repEnd "2357"; repFamily "ERVL"; repLeft "-3310"; repStart "1737"; chr5 rmsk exon 99004176 99004414 1729 + . gene_id "ERVLE_5q21.1a"; transcript_id "ERVLE_5q21.1a"; locus "ERVLE_5q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1432"; repClass "LTR"; repEnd "2610"; repFamily "ERVL"; repLeft "-3057"; repStart "2358"; chr5 rmsk exon 99004442 99004603 341 + . gene_id "ERVLE_5q21.1a"; transcript_id "ERVLE_5q21.1a"; locus "ERVLE_5q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1432"; repClass "LTR"; repEnd "3222"; repFamily "ERVL"; repLeft "-2445"; repStart "3046"; chr5 rmsk exon 99004602 99005978 3398 + . gene_id "ERVLE_5q21.1a"; transcript_id "ERVLE_5q21.1a"; locus "ERVLE_5q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1432"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "-1250"; repStart "2837"; ### HERVH_5q21.1a ### chr5 rmsk gene 99010824 99016954 . - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0490"; model_cov "5353"; model_pct "69.4"; chr5 rmsk exon 99010824 99011254 3407 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 99011259 99011823 3376 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "7157"; repStart "-4"; chr5 rmsk exon 99011817 99012081 1437 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr5 rmsk exon 99012082 99013016 6094 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "3962"; repStart "-2803"; chr5 rmsk exon 99013053 99013205 1024 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3841"; repStart "-3720"; chr5 rmsk exon 99013211 99013657 2632 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr5 rmsk exon 99013652 99016521 12128 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2"; repStart "-4726"; chr5 rmsk exon 99016523 99016954 3459 - . gene_id "HERVH_5q21.1a"; transcript_id "HERVH_5q21.1a"; locus "HERVH_5q21.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0490"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_5q21.1b ### chr5 rmsk gene 99842677 99844867 . - . gene_id "ERV316A3_5q21.1b"; transcript_id "ERV316A3_5q21.1b"; locus "ERV316A3_5q21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1077"; model_cov "1256"; model_pct "24.0"; chr5 rmsk exon 99842677 99843108 836 - . gene_id "ERV316A3_5q21.1b"; transcript_id "ERV316A3_5q21.1b"; locus "ERV316A3_5q21.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1077"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-48"; repStart "-2"; chr5 rmsk exon 99843355 99844118 1277 - . gene_id "ERV316A3_5q21.1b"; transcript_id "ERV316A3_5q21.1b"; locus "ERV316A3_5q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1077"; repClass "LTR"; repEnd "4927"; repFamily "ERVL"; repLeft "4155"; repStart "-299"; chr5 rmsk exon 99844426 99844867 942 - . gene_id "ERV316A3_5q21.1b"; transcript_id "ERV316A3_5q21.1b"; locus "ERV316A3_5q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1077"; repClass "LTR"; repEnd "3239"; repFamily "ERVL"; repLeft "2755"; repStart "-1987"; ### ERVLE_5q21.1b ### chr5 rmsk gene 99899489 99901357 . - . gene_id "ERVLE_5q21.1b"; transcript_id "ERVLE_5q21.1b"; locus "ERVLE_5q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1434"; model_cov "1917"; model_pct "33.8"; chr5 rmsk exon 99899489 99899734 657 - . gene_id "ERVLE_5q21.1b"; transcript_id "ERVLE_5q21.1b"; locus "ERVLE_5q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1434"; repClass "LTR"; repEnd "5407"; repFamily "ERVL"; repLeft "5155"; repStart "-260"; chr5 rmsk exon 99899770 99900173 1042 - . gene_id "ERVLE_5q21.1b"; transcript_id "ERVLE_5q21.1b"; locus "ERVLE_5q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1434"; repClass "LTR"; repEnd "4953"; repFamily "ERVL"; repLeft "4522"; repStart "-714"; chr5 rmsk exon 99900253 99901357 2700 - . gene_id "ERVLE_5q21.1b"; transcript_id "ERVLE_5q21.1b"; locus "ERVLE_5q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1434"; repClass "LTR"; repEnd "4409"; repFamily "ERVL"; repLeft "3175"; repStart "-1258"; ### MER41_5q21.1a ### chr5 rmsk gene 100162370 100163828 . - . gene_id "MER41_5q21.1a"; transcript_id "MER41_5q21.1a"; locus "MER41_5q21.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0187"; model_cov "1447"; model_pct "24.3"; chr5 rmsk exon 100162370 100163526 6611 - . gene_id "MER41_5q21.1a"; transcript_id "MER41_5q21.1a"; locus "MER41_5q21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0187"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1111"; repStart "-3651"; chr5 rmsk exon 100163566 100163828 1718 - . gene_id "MER41_5q21.1a"; transcript_id "MER41_5q21.1a"; locus "MER41_5q21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0187"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "361"; repStart "-5322"; ### LTR25_5q21.1a ### chr5 rmsk gene 100419483 100423586 . + . gene_id "LTR25_5q21.1a"; transcript_id "LTR25_5q21.1a"; locus "LTR25_5q21.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0045"; model_cov "4100"; model_pct "57.0"; chr5 rmsk exon 100419483 100423586 23767 + . gene_id "LTR25_5q21.1a"; transcript_id "LTR25_5q21.1a"; locus "LTR25_5q21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0045"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "-2"; repStart "3086"; ### MER61_5q21.1 ### chr5 rmsk gene 100639136 100642471 . + . gene_id "MER61_5q21.1"; transcript_id "MER61_5q21.1"; locus "MER61_5q21.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0159"; model_cov "3046"; model_pct "58.4"; chr5 rmsk exon 100639136 100639299 800 + . gene_id "MER61_5q21.1"; transcript_id "MER61_5q21.1"; locus "MER61_5q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0159"; repClass "LTR"; repEnd "181"; repFamily "ERV1"; repLeft "-160"; repStart "1"; chr5 rmsk exon 100639367 100642138 17228 + . gene_id "MER61_5q21.1"; transcript_id "MER61_5q21.1"; locus "MER61_5q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0159"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "2170"; chr5 rmsk exon 100642140 100642471 1840 + . gene_id "MER61_5q21.1"; transcript_id "MER61_5q21.1"; locus "MER61_5q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0159"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q21.1c ### chr5 rmsk gene 100798069 100800597 . + . gene_id "ERVLE_5q21.1c"; transcript_id "ERVLE_5q21.1c"; locus "ERVLE_5q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1435"; model_cov "2306"; model_pct "40.7"; chr5 rmsk exon 100798069 100798458 1323 + . gene_id "ERVLE_5q21.1c"; transcript_id "ERVLE_5q21.1c"; locus "ERVLE_5q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1435"; repClass "LTR"; repEnd "3417"; repFamily "ERVL"; repLeft "-2250"; repStart "3016"; chr5 rmsk exon 100798808 100799124 1323 + . gene_id "ERVLE_5q21.1c"; transcript_id "ERVLE_5q21.1c"; locus "ERVLE_5q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1435"; repClass "LTR"; repEnd "3732"; repFamily "ERVL"; repLeft "-1935"; repStart "3418"; chr5 rmsk exon 100799132 100800597 1965 + . gene_id "ERVLE_5q21.1c"; transcript_id "ERVLE_5q21.1c"; locus "ERVLE_5q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1435"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-431"; repStart "3645"; ### HERVH_5q21.1b ### chr5 rmsk gene 100984292 100990224 . - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0491"; model_cov "4911"; model_pct "63.7"; chr5 rmsk exon 100984292 100984723 2655 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 100984724 100985103 2509 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr5 rmsk exon 100985102 100985322 1351 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr5 rmsk exon 100985320 100985949 3889 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 100985952 100986454 3397 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 100986445 100986592 902 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 100986587 100989790 16467 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 100989793 100990224 2651 - . gene_id "HERVH_5q21.1b"; transcript_id "HERVH_5q21.1b"; locus "HERVH_5q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0491"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERV4_5q21.1 ### chr5 rmsk gene 101047208 101050484 . + . gene_id "HERV4_5q21.1"; transcript_id "HERV4_5q21.1"; locus "HERV4_5q21.1"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0046"; model_cov "2584"; model_pct "39.5"; chr5 rmsk exon 101047208 101047682 2773 + . gene_id "HERV4_5q21.1"; transcript_id "HERV4_5q21.1"; locus "HERV4_5q21.1"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0046"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 101047715 101047775 329 + . gene_id "HERV4_5q21.1"; transcript_id "HERV4_5q21.1"; locus "HERV4_5q21.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0046"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-6481"; repStart "2"; chr5 rmsk exon 101047978 101048081 359 + . gene_id "HERV4_5q21.1"; transcript_id "HERV4_5q21.1"; locus "HERV4_5q21.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0046"; repClass "LTR"; repEnd "817"; repFamily "ERV1"; repLeft "-5722"; repStart "708"; chr5 rmsk exon 101048166 101050484 10345 + . gene_id "HERV4_5q21.1"; transcript_id "HERV4_5q21.1"; locus "HERV4_5q21.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0046"; repClass "LTR"; repEnd "3690"; repFamily "ERV1"; repLeft "-2849"; repStart "1271"; ### ERVLB4_5q21.1 ### chr5 rmsk gene 101073618 101078991 . + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0646"; model_cov "3903"; model_pct "68.3"; chr5 rmsk exon 101073618 101074163 1710 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 101074165 101074718 2193 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "-5104"; repStart "2"; chr5 rmsk exon 101074895 101075119 733 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "835"; repFamily "ERVL"; repLeft "-4879"; repStart "606"; chr5 rmsk exon 101075117 101078018 15642 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "-1316"; repStart "1481"; chr5 rmsk exon 101078301 101078449 668 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "-3"; repStart "5562"; chr5 rmsk exon 101078456 101078896 2252 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "466"; repFamily "ERVL"; repLeft "-54"; repStart "3"; chr5 rmsk exon 101078944 101078991 2252 + . gene_id "ERVLB4_5q21.1"; transcript_id "ERVLB4_5q21.1"; locus "ERVLB4_5q21.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0646"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "467"; ### HERVH_5q21.1c ### chr5 rmsk gene 101315240 101320597 . + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0492"; model_cov "4699"; model_pct "60.9"; chr5 rmsk exon 101315240 101315641 2463 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 101315644 101316742 11056 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "1410"; repFamily "ERV1"; repLeft "-6303"; repStart "216"; chr5 rmsk exon 101316881 101318327 11056 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1411"; chr5 rmsk exon 101318300 101318451 644 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3126"; chr5 rmsk exon 101318442 101318944 3374 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 101318947 101319597 4176 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 101319599 101319814 1401 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 101319813 101320181 2155 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "7706"; repFamily "ERV1"; repLeft "-7"; repStart "7322"; chr5 rmsk exon 101320188 101320597 2659 + . gene_id "HERVH_5q21.1c"; transcript_id "HERVH_5q21.1c"; locus "HERVH_5q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0492"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_5q21.1b ### chr5 rmsk gene 101394038 101397196 . + . gene_id "MER41_5q21.1b"; transcript_id "MER41_5q21.1b"; locus "MER41_5q21.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0188"; model_cov "2653"; model_pct "44.6"; chr5 rmsk exon 101394038 101394686 3988 + . gene_id "MER41_5q21.1b"; transcript_id "MER41_5q21.1b"; locus "MER41_5q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0188"; repClass "LTR"; repEnd "-935"; repFamily "ERV1"; repLeft "-6881"; repStart "-1590"; chr5 rmsk exon 101394708 101397196 6382 + . gene_id "MER41_5q21.1b"; transcript_id "MER41_5q21.1b"; locus "MER41_5q21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0188"; repClass "LTR"; repEnd "2930"; repFamily "ERV1"; repLeft "-3016"; repStart "932"; ### ERV316A3_5q21.1c ### chr5 rmsk gene 101483797 101486830 . + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1081"; model_cov "1889"; model_pct "36.1"; chr5 rmsk exon 101483797 101484522 637 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "3665"; repFamily "ERVL"; repLeft "-1561"; repStart "2923"; chr5 rmsk exon 101484751 101484844 570 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "4045"; repFamily "ERVL"; repLeft "-1181"; repStart "3946"; chr5 rmsk exon 101485169 101485268 570 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "4142"; repFamily "ERVL"; repLeft "-1084"; repStart "4046"; chr5 rmsk exon 101485283 101485629 933 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "4489"; repFamily "ERVL"; repLeft "-737"; repStart "4141"; chr5 rmsk exon 101485908 101486067 933 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "4649"; repFamily "ERVL"; repLeft "-577"; repStart "4490"; chr5 rmsk exon 101486100 101486318 815 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "4920"; repFamily "ERVL"; repLeft "-306"; repStart "4700"; chr5 rmsk exon 101486357 101486566 525 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5001"; chr5 rmsk exon 101486586 101486830 242 + . gene_id "ERV316A3_5q21.1c"; transcript_id "ERV316A3_5q21.1c"; locus "ERV316A3_5q21.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1081"; repClass "LTR"; repEnd "292"; repFamily "ERVL"; repLeft "-159"; repStart "24"; ### LTR25_5q21.1b ### chr5 rmsk gene 101534634 101535838 . - . gene_id "LTR25_5q21.1b"; transcript_id "LTR25_5q21.1b"; locus "LTR25_5q21.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0046"; model_cov "1229"; model_pct "17.1"; chr5 rmsk exon 101534634 101535838 5187 - . gene_id "LTR25_5q21.1b"; transcript_id "LTR25_5q21.1b"; locus "LTR25_5q21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0046"; repClass "LTR"; repEnd "1266"; repFamily "ERV1"; repLeft "37"; repStart "-5922"; ### HERVL18_5q21.1 ### chr5 rmsk gene 101758012 101763009 . - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0060"; model_cov "4199"; model_pct "69.4"; chr5 rmsk exon 101758012 101758339 1200 - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0060"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 101758340 101758663 2033 - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0060"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5724"; repStart "0"; chr5 rmsk exon 101758645 101762355 16511 - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0060"; repClass "LTR"; repEnd "3877"; repFamily "ERVL"; repLeft "1"; repStart "-2170"; chr5 rmsk exon 101762365 101762442 1233 - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0060"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "292"; repStart "0"; chr5 rmsk exon 101762750 101763009 1233 - . gene_id "HERVL18_5q21.1"; transcript_id "HERVL18_5q21.1"; locus "HERVL18_5q21.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0060"; repClass "LTR"; repEnd "291"; repFamily "ERVL"; repLeft "1"; repStart "-66"; ### PABLB_5q21.1 ### chr5 rmsk gene 101952838 101954423 . - . gene_id "PABLB_5q21.1"; transcript_id "PABLB_5q21.1"; locus "PABLB_5q21.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0033"; model_cov "1506"; model_pct "21.1"; chr5 rmsk exon 101952838 101954423 1128 - . gene_id "PABLB_5q21.1"; transcript_id "PABLB_5q21.1"; locus "PABLB_5q21.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0033"; repClass "LTR"; repEnd "4077"; repFamily "ERV1"; repLeft "2571"; repStart "-3045"; ### HERVL_5q21.1 ### chr5 rmsk gene 101954496 101955931 . - . gene_id "HERVL_5q21.1"; transcript_id "HERVL_5q21.1"; locus "HERVL_5q21.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0535"; model_cov "803"; model_pct "14.2"; chr5 rmsk exon 101954496 101954550 411 - . gene_id "HERVL_5q21.1"; transcript_id "HERVL_5q21.1"; locus "HERVL_5q21.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0535"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr5 rmsk exon 101954614 101954664 244 - . gene_id "HERVL_5q21.1"; transcript_id "HERVL_5q21.1"; locus "HERVL_5q21.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0535"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "363"; repStart "-41"; chr5 rmsk exon 101954733 101955119 2813 - . gene_id "HERVL_5q21.1"; transcript_id "HERVL_5q21.1"; locus "HERVL_5q21.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0535"; repClass "LTR"; repEnd "362"; repFamily "ERVL"; repLeft "-110"; repStart "-82"; chr5 rmsk exon 101955120 101955931 6160 - . gene_id "HERVL_5q21.1"; transcript_id "HERVL_5q21.1"; locus "HERVL_5q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0535"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4851"; repStart "0"; ### PRIMA41_5q21.1 ### chr5 rmsk gene 102337809 102346433 . - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0063"; model_cov "7617"; model_pct "98.2"; chr5 rmsk exon 102337809 102338099 1774 - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0063"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "248"; repStart "-4"; chr5 rmsk exon 102338244 102338453 1453 - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0063"; repClass "LTR"; repEnd "274"; repFamily "ERV1"; repLeft "64"; repStart "-247"; chr5 rmsk exon 102338454 102342630 47231 - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0063"; repClass "LTR"; repEnd "7620"; repFamily "ERV1"; repLeft "3492"; repStart "-136"; chr5 rmsk exon 102342942 102345692 47231 - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0063"; repClass "LTR"; repEnd "3491"; repFamily "ERV1"; repLeft "718"; repStart "-4265"; chr5 rmsk exon 102345729 102346433 47231 - . gene_id "PRIMA41_5q21.1"; transcript_id "PRIMA41_5q21.1"; locus "PRIMA41_5q21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0063"; repClass "LTR"; repEnd "717"; repFamily "ERV1"; repLeft "1"; repStart "-7039"; ### HERVL40_5q21.1 ### chr5 rmsk gene 102434122 102436939 . + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0162"; model_cov "1748"; model_pct "31.6"; chr5 rmsk exon 102434122 102434625 1743 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-5"; repStart "34"; chr5 rmsk exon 102434688 102434895 475 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-5109"; repStart "223"; chr5 rmsk exon 102434914 102435079 640 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "407"; chr5 rmsk exon 102435121 102435234 388 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "676"; repFamily "ERVL"; repLeft "-4854"; repStart "568"; chr5 rmsk exon 102435398 102435592 2786 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "1802"; repFamily "ERVL"; repLeft "-3728"; repStart "1600"; chr5 rmsk exon 102435892 102436939 2786 + . gene_id "HERVL40_5q21.1"; transcript_id "HERVL40_5q21.1"; locus "HERVL40_5q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0162"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "-2650"; repStart "1803"; ### ERVLE_5q21.1d ### chr5 rmsk gene 102481627 102484291 . - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1438"; model_cov "1696"; model_pct "29.9"; chr5 rmsk exon 102481627 102481878 389 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "5398"; repStart "-15"; chr5 rmsk exon 102482337 102482438 305 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "5202"; repStart "-365"; chr5 rmsk exon 102482466 102483189 1656 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "3922"; repStart "-1023"; chr5 rmsk exon 102483281 102483380 350 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "3749"; repFamily "ERVL"; repLeft "3646"; repStart "-1918"; chr5 rmsk exon 102483649 102483931 781 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "761"; repFamily "ERVL"; repLeft "461"; repStart "-4906"; chr5 rmsk exon 102484076 102484291 558 - . gene_id "ERVLE_5q21.1d"; transcript_id "ERVLE_5q21.1d"; locus "ERVLE_5q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1438"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "37"; repStart "-5413"; ### ERV316A3_5q21.2a ### chr5 rmsk gene 103623073 103625763 . - . gene_id "ERV316A3_5q21.2a"; transcript_id "ERV316A3_5q21.2a"; locus "ERV316A3_5q21.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1083"; model_cov "1079"; model_pct "20.6"; chr5 rmsk exon 103623073 103623785 1129 - . gene_id "ERV316A3_5q21.2a"; transcript_id "ERV316A3_5q21.2a"; locus "ERV316A3_5q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1083"; repClass "LTR"; repEnd "4569"; repFamily "ERVL"; repLeft "3788"; repStart "-657"; chr5 rmsk exon 103624481 103624661 437 - . gene_id "ERV316A3_5q21.2a"; transcript_id "ERV316A3_5q21.2a"; locus "ERV316A3_5q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1083"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2348"; repStart "-2708"; chr5 rmsk exon 103624778 103624901 372 - . gene_id "ERV316A3_5q21.2a"; transcript_id "ERV316A3_5q21.2a"; locus "ERV316A3_5q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1083"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "95"; repStart "-5003"; chr5 rmsk exon 103625306 103625763 1631 - . gene_id "ERV316A3_5q21.2a"; transcript_id "ERV316A3_5q21.2a"; locus "ERV316A3_5q21.2a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1083"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVH_5q21.2a ### chr5 rmsk gene 104031710 104037313 . + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0493"; model_cov "4910"; model_pct "63.7"; chr5 rmsk exon 104031710 104032118 2539 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 104032121 104035020 16086 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr5 rmsk exon 104035007 104035154 889 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 104035145 104035647 3419 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 104035650 104036309 4408 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr5 rmsk exon 104036314 104036530 1354 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 104036529 104036904 2264 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 104036905 104037313 2642 + . gene_id "HERVH_5q21.2a"; transcript_id "HERVH_5q21.2a"; locus "HERVH_5q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0493"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_5q21.2b ### chr5 rmsk gene 104063635 104070481 . - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0494"; model_cov "5758"; model_pct "74.7"; chr5 rmsk exon 104063635 104064084 3460 - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0494"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 104064085 104064469 2364 - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0494"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr5 rmsk exon 104064468 104064670 1189 - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0494"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 104064672 104070028 16785 - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0494"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr5 rmsk exon 104070031 104070481 3467 - . gene_id "HERVH_5q21.2b"; transcript_id "HERVH_5q21.2b"; locus "HERVH_5q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0494"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3_5q21.2 ### chr5 rmsk gene 104177817 104182663 . + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0069"; model_cov "3006"; model_pct "33.7"; chr5 rmsk exon 104177817 104178476 3774 + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0069"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 104178499 104180970 11544 + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0069"; repClass "LTR"; repEnd "2457"; repFamily "ERV1"; repLeft "-6462"; repStart "22"; chr5 rmsk exon 104181030 104181709 3588 + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0069"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8347"; chr5 rmsk exon 104181711 104181866 3507 + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0069"; repClass "LTR"; repEnd "142"; repFamily "ERV1"; repLeft "-470"; repStart "2"; chr5 rmsk exon 104182163 104182663 3507 + . gene_id "HUERSP3_5q21.2"; transcript_id "HUERSP3_5q21.2"; locus "HUERSP3_5q21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0069"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "143"; ### HERVL18_5q21.2 ### chr5 rmsk gene 104186177 104189485 . + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0061"; model_cov "2451"; model_pct "40.5"; chr5 rmsk exon 104186177 104186527 2530 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 104186552 104186882 1610 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "-5631"; repStart "95"; chr5 rmsk exon 104186886 104187492 1995 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1124"; chr5 rmsk exon 104187492 104187762 1460 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr5 rmsk exon 104187762 104188618 5390 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr5 rmsk exon 104188622 104188713 611 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4395"; chr5 rmsk exon 104188714 104188772 323 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "5209"; chr5 rmsk exon 104188773 104188874 563 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr5 rmsk exon 104189161 104189485 2168 + . gene_id "HERVL18_5q21.2"; transcript_id "HERVL18_5q21.2"; locus "HERVL18_5q21.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0061"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFH19_5q21.2 ### chr5 rmsk gene 104590997 104598725 . + . gene_id "HERVFH19_5q21.2"; transcript_id "HERVFH19_5q21.2"; locus "HERVFH19_5q21.2"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0015"; model_cov "7353"; model_pct "95.3"; chr5 rmsk exon 104590997 104598240 40522 + . gene_id "HERVFH19_5q21.2"; transcript_id "HERVFH19_5q21.2"; locus "HERVFH19_5q21.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0015"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "366"; chr5 rmsk exon 104598241 104598725 2827 + . gene_id "HERVFH19_5q21.2"; transcript_id "HERVFH19_5q21.2"; locus "HERVFH19_5q21.2"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0015"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_5q21.2b ### chr5 rmsk gene 104742150 104747099 . + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1085"; model_cov "2402"; model_pct "46.0"; chr5 rmsk exon 104742150 104742567 1016 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 104743044 104743145 257 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "162"; repFamily "ERVL"; repLeft "-5064"; repStart "61"; chr5 rmsk exon 104743581 104744394 2003 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "1556"; repFamily "ERVL"; repLeft "-3670"; repStart "725"; chr5 rmsk exon 104744945 104746320 3196 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "2940"; repFamily "ERVL"; repLeft "-2286"; repStart "1604"; chr5 rmsk exon 104746344 104746458 300 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "5209"; repFamily "ERVL"; repLeft "-17"; repStart "5091"; chr5 rmsk exon 104746819 104746837 300 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5210"; chr5 rmsk exon 104746838 104747099 983 + . gene_id "ERV316A3_5q21.2b"; transcript_id "ERV316A3_5q21.2b"; locus "ERV316A3_5q21.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1085"; repClass "LTR"; repEnd "283"; repFamily "ERVL"; repLeft "-180"; repStart "1"; ### ERV316A3_5q21.2c ### chr5 rmsk gene 104772287 104774091 . - . gene_id "ERV316A3_5q21.2c"; transcript_id "ERV316A3_5q21.2c"; locus "ERV316A3_5q21.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1086"; model_cov "1844"; model_pct "35.3"; chr5 rmsk exon 104772287 104773230 2444 - . gene_id "ERV316A3_5q21.2c"; transcript_id "ERV316A3_5q21.2c"; locus "ERV316A3_5q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1086"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "3395"; repStart "-756"; chr5 rmsk exon 104773279 104773596 2444 - . gene_id "ERV316A3_5q21.2c"; transcript_id "ERV316A3_5q21.2c"; locus "ERV316A3_5q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1086"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "3512"; repStart "-1391"; chr5 rmsk exon 104773620 104774091 617 - . gene_id "ERV316A3_5q21.2c"; transcript_id "ERV316A3_5q21.2c"; locus "ERV316A3_5q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1086"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "2987"; repStart "-1793"; ### HERVL_5q21.2a ### chr5 rmsk gene 104864533 104867738 . + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0537"; model_cov "1966"; model_pct "34.8"; chr5 rmsk exon 104864533 104864968 2824 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "5"; chr5 rmsk exon 104865057 104866587 11892 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "1713"; repFamily "ERVL"; repLeft "-3941"; repStart "182"; chr5 rmsk exon 104866628 104867064 3188 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5219"; chr5 rmsk exon 104867065 104867492 2689 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-35"; repStart "-110"; chr5 rmsk exon 104867605 104867645 235 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "-15"; repStart "390"; chr5 rmsk exon 104867662 104867738 277 + . gene_id "HERVL_5q21.2a"; transcript_id "HERVL_5q21.2a"; locus "HERVL_5q21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0537"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "370"; ### HERVL_5q21.2b ### chr5 rmsk gene 104870810 104872029 . + . gene_id "HERVL_5q21.2b"; transcript_id "HERVL_5q21.2b"; locus "HERVL_5q21.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0538"; model_cov "750"; model_pct "13.3"; chr5 rmsk exon 104870810 104871542 5428 + . gene_id "HERVL_5q21.2b"; transcript_id "HERVL_5q21.2b"; locus "HERVL_5q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0538"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4904"; chr5 rmsk exon 104871561 104872029 3018 + . gene_id "HERVL_5q21.2b"; transcript_id "HERVL_5q21.2b"; locus "HERVL_5q21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0538"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP2_5q21.2 ### chr5 rmsk gene 104871543 104872694 . - . gene_id "HUERSP2_5q21.2"; transcript_id "HUERSP2_5q21.2"; locus "HUERSP2_5q21.2"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0054"; model_cov "687"; model_pct "22.2"; chr5 rmsk exon 104871543 104871560 3352 - . gene_id "HUERSP2_5q21.2"; transcript_id "HUERSP2_5q21.2"; locus "HUERSP2_5q21.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0054"; repClass "LTR"; repEnd "1636"; repFamily "ERV1"; repLeft "1618"; repStart "-1452"; chr5 rmsk exon 104872030 104872694 3352 - . gene_id "HUERSP2_5q21.2"; transcript_id "HUERSP2_5q21.2"; locus "HUERSP2_5q21.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0054"; repClass "LTR"; repEnd "1617"; repFamily "ERV1"; repLeft "948"; repStart "-1471"; ### ERVLB4_5q21.2 ### chr5 rmsk gene 104892563 104895292 . - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0648"; model_cov "2238"; model_pct "39.2"; chr5 rmsk exon 104892563 104892739 275 - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0648"; repClass "LTR"; repEnd "5377"; repFamily "ERVL"; repLeft "5187"; repStart "-337"; chr5 rmsk exon 104893060 104893511 1205 - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0648"; repClass "LTR"; repEnd "4196"; repFamily "ERVL"; repLeft "3715"; repStart "-1518"; chr5 rmsk exon 104893570 104893797 491 - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0648"; repClass "LTR"; repEnd "3611"; repFamily "ERVL"; repLeft "3378"; repStart "-2103"; chr5 rmsk exon 104893857 104894071 593 - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0648"; repClass "LTR"; repEnd "3274"; repFamily "ERVL"; repLeft "3056"; repStart "-2440"; chr5 rmsk exon 104894233 104895292 2141 - . gene_id "ERVLB4_5q21.2"; transcript_id "ERVLB4_5q21.2"; locus "ERVLB4_5q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0648"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "1764"; repStart "-2834"; ### ERV316A3_5q21.2d ### chr5 rmsk gene 105021251 105022827 . - . gene_id "ERV316A3_5q21.2d"; transcript_id "ERV316A3_5q21.2d"; locus "ERV316A3_5q21.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1088"; model_cov "1358"; model_pct "26.0"; chr5 rmsk exon 105021251 105022566 1707 - . gene_id "ERV316A3_5q21.2d"; transcript_id "ERV316A3_5q21.2d"; locus "ERV316A3_5q21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1088"; repClass "LTR"; repEnd "1875"; repFamily "ERVL"; repLeft "517"; repStart "-3351"; chr5 rmsk exon 105022570 105022827 719 - . gene_id "ERV316A3_5q21.2d"; transcript_id "ERV316A3_5q21.2d"; locus "ERV316A3_5q21.2d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1088"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "63"; repStart "-132"; ### HERVL_5q21.3a ### chr5 rmsk gene 105112297 105115549 . - . gene_id "HERVL_5q21.3a"; transcript_id "HERVL_5q21.3a"; locus "HERVL_5q21.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0539"; model_cov "2476"; model_pct "43.8"; chr5 rmsk exon 105112297 105112703 2893 - . gene_id "HERVL_5q21.3a"; transcript_id "HERVL_5q21.3a"; locus "HERVL_5q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0539"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr5 rmsk exon 105112704 105112806 746 - . gene_id "HERVL_5q21.3a"; transcript_id "HERVL_5q21.3a"; locus "HERVL_5q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0539"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5552"; repStart "0"; chr5 rmsk exon 105112813 105115162 17552 - . gene_id "HERVL_5q21.3a"; transcript_id "HERVL_5q21.3a"; locus "HERVL_5q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0539"; repClass "LTR"; repEnd "4093"; repFamily "ERVL"; repLeft "1719"; repStart "-1561"; chr5 rmsk exon 105115163 105115549 2708 - . gene_id "HERVL_5q21.3a"; transcript_id "HERVL_5q21.3a"; locus "HERVL_5q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0539"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### HERVL40_5q21.3a ### chr5 rmsk gene 105669579 105672089 . + . gene_id "HERVL40_5q21.3a"; transcript_id "HERVL40_5q21.3a"; locus "HERVL40_5q21.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0163"; model_cov "1711"; model_pct "30.9"; chr5 rmsk exon 105669579 105669697 2498 + . gene_id "HERVL40_5q21.3a"; transcript_id "HERVL40_5q21.3a"; locus "HERVL40_5q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0163"; repClass "LTR"; repEnd "1647"; repFamily "ERVL"; repLeft "-3883"; repStart "1529"; chr5 rmsk exon 105669904 105671227 2498 + . gene_id "HERVL40_5q21.3a"; transcript_id "HERVL40_5q21.3a"; locus "HERVL40_5q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0163"; repClass "LTR"; repEnd "2989"; repFamily "ERVL"; repLeft "-2541"; repStart "1648"; chr5 rmsk exon 105671670 105671918 831 + . gene_id "HERVL40_5q21.3a"; transcript_id "HERVL40_5q21.3a"; locus "HERVL40_5q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0163"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5278"; chr5 rmsk exon 105671938 105672089 587 + . gene_id "HERVL40_5q21.3a"; transcript_id "HERVL40_5q21.3a"; locus "HERVL40_5q21.3a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0163"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "304"; ### HERVL_5q21.3b ### chr5 rmsk gene 105993649 105996243 . + . gene_id "HERVL_5q21.3b"; transcript_id "HERVL_5q21.3b"; locus "HERVL_5q21.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0540"; model_cov "2154"; model_pct "38.1"; chr5 rmsk exon 105993649 105995800 15313 + . gene_id "HERVL_5q21.3b"; transcript_id "HERVL_5q21.3b"; locus "HERVL_5q21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0540"; repClass "LTR"; repEnd "5616"; repFamily "ERVL"; repLeft "-38"; repStart "3462"; chr5 rmsk exon 105995801 105996243 3123 + . gene_id "HERVL_5q21.3b"; transcript_id "HERVL_5q21.3b"; locus "HERVL_5q21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0540"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### MER34B_5q21.3 ### chr5 rmsk gene 106123290 106126091 . - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0110"; model_cov "1988"; model_pct "37.1"; chr5 rmsk exon 106123290 106123758 2290 - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0110"; repClass "LTR"; repEnd "3289"; repFamily "ERV1"; repLeft "2800"; repStart "-2067"; chr5 rmsk exon 106124158 106124786 2290 - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0110"; repClass "LTR"; repEnd "2799"; repFamily "ERV1"; repLeft "2160"; repStart "-2557"; chr5 rmsk exon 106125095 106125357 2290 - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0110"; repClass "LTR"; repEnd "2159"; repFamily "ERV1"; repLeft "1800"; repStart "-3197"; chr5 rmsk exon 106125350 106125832 1119 - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0110"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "1133"; repStart "-3722"; chr5 rmsk exon 106125835 106126091 1046 - . gene_id "MER34B_5q21.3"; transcript_id "MER34B_5q21.3"; locus "MER34B_5q21.3"; repName "MER34C"; geneRegion "ltr"; locid "MER34B-int_0110"; repClass "LTR"; repEnd "378"; repFamily "ERV1"; repLeft "124"; repStart "-173"; ### HERVL40_5q21.3b ### chr5 rmsk gene 106451835 106453977 . + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0164"; model_cov "888"; model_pct "16.1"; chr5 rmsk exon 106451835 106452266 1759 + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0164"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr5 rmsk exon 106452269 106452537 522 + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0164"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-5252"; repStart "2"; chr5 rmsk exon 106452870 106452960 387 + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0164"; repClass "LTR"; repEnd "3358"; repFamily "ERVL"; repLeft "-2172"; repStart "3265"; chr5 rmsk exon 106453461 106453596 508 + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0164"; repClass "LTR"; repEnd "3507"; repFamily "ERVL"; repLeft "-2023"; repStart "3374"; chr5 rmsk exon 106453611 106453977 1246 + . gene_id "HERVL40_5q21.3b"; transcript_id "HERVL40_5q21.3b"; locus "HERVL40_5q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0164"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "-1426"; repStart "3718"; ### HERVL_5q21.3c ### chr5 rmsk gene 106561148 106564105 . + . gene_id "HERVL_5q21.3c"; transcript_id "HERVL_5q21.3c"; locus "HERVL_5q21.3c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0542"; model_cov "2854"; model_pct "50.5"; chr5 rmsk exon 106561148 106563172 14460 + . gene_id "HERVL_5q21.3c"; transcript_id "HERVL_5q21.3c"; locus "HERVL_5q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0542"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "-3530"; repStart "100"; chr5 rmsk exon 106563282 106564105 5993 + . gene_id "HERVL_5q21.3c"; transcript_id "HERVL_5q21.3c"; locus "HERVL_5q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0542"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "-2702"; repStart "2122"; ### HERVL18_5q21.3 ### chr5 rmsk gene 106873494 106876978 . - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0062"; model_cov "2758"; model_pct "45.6"; chr5 rmsk exon 106873494 106873895 2150 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 106873897 106874885 6063 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5055"; repStart "0"; chr5 rmsk exon 106874902 106875097 1174 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "2119"; repStart "-3713"; chr5 rmsk exon 106875097 106876033 5774 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "858"; repStart "-4237"; chr5 rmsk exon 106876032 106876559 2084 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "694"; repFamily "ERVL"; repLeft "95"; repStart "-5353"; chr5 rmsk exon 106876584 106876978 2052 - . gene_id "HERVL18_5q21.3"; transcript_id "HERVL18_5q21.3"; locus "HERVL18_5q21.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0062"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_5q21.3d ### chr5 rmsk gene 106912744 106919416 . - . gene_id "HERVL_5q21.3d"; transcript_id "HERVL_5q21.3d"; locus "HERVL_5q21.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0543"; model_cov "5652"; model_pct "100.0"; chr5 rmsk exon 106912744 106913136 2910 - . gene_id "HERVL_5q21.3d"; transcript_id "HERVL_5q21.3d"; locus "HERVL_5q21.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0543"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "1"; repStart "-49"; chr5 rmsk exon 106913137 106913291 42812 - . gene_id "HERVL_5q21.3d"; transcript_id "HERVL_5q21.3d"; locus "HERVL_5q21.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0543"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5513"; repStart "0"; chr5 rmsk exon 106913551 106918989 42812 - . gene_id "HERVL_5q21.3d"; transcript_id "HERVL_5q21.3d"; locus "HERVL_5q21.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0543"; repClass "LTR"; repEnd "5512"; repFamily "ERVL"; repLeft "1"; repStart "-142"; chr5 rmsk exon 106918990 106919416 3300 - . gene_id "HERVL_5q21.3d"; transcript_id "HERVL_5q21.3d"; locus "HERVL_5q21.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0543"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5q21.3a ### chr5 rmsk gene 106967504 106968459 . + . gene_id "ERVLE_5q21.3a"; transcript_id "ERVLE_5q21.3a"; locus "ERVLE_5q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1441"; model_cov "922"; model_pct "16.3"; chr5 rmsk exon 106967504 106968459 2058 + . gene_id "ERVLE_5q21.3a"; transcript_id "ERVLE_5q21.3a"; locus "ERVLE_5q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1441"; repClass "LTR"; repEnd "2953"; repFamily "ERVL"; repLeft "-2714"; repStart "2031"; ### HERVH_5q21.3a ### chr5 rmsk gene 106978588 106984086 . + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0495"; model_cov "4686"; model_pct "60.8"; chr5 rmsk exon 106978588 106979038 3406 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 106979041 106979355 2209 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-7387"; repStart "1"; chr5 rmsk exon 106979355 106981781 15928 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "555"; chr5 rmsk exon 106981761 106981910 982 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 106981901 106982405 3365 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 106982408 106983046 4130 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 106983044 106983261 1343 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr5 rmsk exon 106983262 106983635 2407 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr5 rmsk exon 106983636 106984086 3407 + . gene_id "HERVH_5q21.3a"; transcript_id "HERVH_5q21.3a"; locus "HERVH_5q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0495"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5q21.3a ### chr5 rmsk gene 107306016 107308065 . + . gene_id "ERV316A3_5q21.3a"; transcript_id "ERV316A3_5q21.3a"; locus "ERV316A3_5q21.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1090"; model_cov "870"; model_pct "16.6"; chr5 rmsk exon 107306016 107306380 1002 + . gene_id "ERV316A3_5q21.3a"; transcript_id "ERV316A3_5q21.3a"; locus "ERV316A3_5q21.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1090"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "-77"; repStart "1"; chr5 rmsk exon 107306506 107307117 1656 + . gene_id "ERV316A3_5q21.3a"; transcript_id "ERV316A3_5q21.3a"; locus "ERV316A3_5q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1090"; repClass "LTR"; repEnd "4139"; repFamily "ERVL"; repLeft "-1087"; repStart "3500"; chr5 rmsk exon 107307396 107307610 549 + . gene_id "ERV316A3_5q21.3a"; transcript_id "ERV316A3_5q21.3a"; locus "ERV316A3_5q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1090"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "-109"; repStart "4886"; chr5 rmsk exon 107307691 107308065 969 + . gene_id "ERV316A3_5q21.3a"; transcript_id "ERV316A3_5q21.3a"; locus "ERV316A3_5q21.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1090"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "36"; ### ERV316A3_5q21.3b ### chr5 rmsk gene 107837892 107839613 . - . gene_id "ERV316A3_5q21.3b"; transcript_id "ERV316A3_5q21.3b"; locus "ERV316A3_5q21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1091"; model_cov "1026"; model_pct "19.6"; chr5 rmsk exon 107837892 107838298 558 - . gene_id "ERV316A3_5q21.3b"; transcript_id "ERV316A3_5q21.3b"; locus "ERV316A3_5q21.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1091"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "4"; repStart "-14"; chr5 rmsk exon 107838320 107838439 1321 - . gene_id "ERV316A3_5q21.3b"; transcript_id "ERV316A3_5q21.3b"; locus "ERV316A3_5q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1091"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5104"; repStart "0"; chr5 rmsk exon 107838761 107839169 1321 - . gene_id "ERV316A3_5q21.3b"; transcript_id "ERV316A3_5q21.3b"; locus "ERV316A3_5q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1091"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "4684"; repStart "-123"; chr5 rmsk exon 107839154 107839613 1381 - . gene_id "ERV316A3_5q21.3b"; transcript_id "ERV316A3_5q21.3b"; locus "ERV316A3_5q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1091"; repClass "LTR"; repEnd "3674"; repFamily "ERVL"; repLeft "3189"; repStart "-1552"; ### HERVL_5q21.3e ### chr5 rmsk gene 108231501 108232851 . + . gene_id "HERVL_5q21.3e"; transcript_id "HERVL_5q21.3e"; locus "HERVL_5q21.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0544"; model_cov "890"; model_pct "15.7"; chr5 rmsk exon 108231501 108232404 6478 + . gene_id "HERVL_5q21.3e"; transcript_id "HERVL_5q21.3e"; locus "HERVL_5q21.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0544"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4764"; chr5 rmsk exon 108232405 108232782 2898 + . gene_id "HERVL_5q21.3e"; transcript_id "HERVL_5q21.3e"; locus "HERVL_5q21.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0544"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr5 rmsk exon 108232813 108232851 2898 + . gene_id "HERVL_5q21.3e"; transcript_id "HERVL_5q21.3e"; locus "HERVL_5q21.3e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0544"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "405"; ### HERVH_5q21.3b ### chr5 rmsk gene 108551801 108555018 . + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0496"; model_cov "2791"; model_pct "36.2"; chr5 rmsk exon 108551801 108552692 5474 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2120"; chr5 rmsk exon 108552672 108552821 939 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 108552812 108553316 3245 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 108553319 108553982 3816 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 108553986 108554196 1190 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5602"; chr5 rmsk exon 108554197 108554567 2470 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr5 rmsk exon 108554568 108555018 3473 + . gene_id "HERVH_5q21.3b"; transcript_id "HERVH_5q21.3b"; locus "HERVH_5q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0496"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_5q21.3c ### chr5 rmsk gene 108567661 108574105 . - . gene_id "HERVH_5q21.3c"; transcript_id "HERVH_5q21.3c"; locus "HERVH_5q21.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0497"; model_cov "5970"; model_pct "77.4"; chr5 rmsk exon 108567661 108568075 2795 - . gene_id "HERVH_5q21.3c"; transcript_id "HERVH_5q21.3c"; locus "HERVH_5q21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0497"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 108568076 108570003 14226 - . gene_id "HERVH_5q21.3c"; transcript_id "HERVH_5q21.3c"; locus "HERVH_5q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0497"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "5769"; repStart "0"; chr5 rmsk exon 108569990 108570169 1131 - . gene_id "HERVH_5q21.3c"; transcript_id "HERVH_5q21.3c"; locus "HERVH_5q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0497"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr5 rmsk exon 108570172 108574105 9673 - . gene_id "HERVH_5q21.3c"; transcript_id "HERVH_5q21.3c"; locus "HERVH_5q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0497"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "159"; repStart "-3720"; ### HERVW_5q21.3 ### chr5 rmsk gene 108574106 108578582 . - . gene_id "HERVW_5q21.3"; transcript_id "HERVW_5q21.3"; locus "HERVW_5q21.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0126"; model_cov "3398"; model_pct "39.4"; chr5 rmsk exon 108574106 108574883 6279 - . gene_id "HERVW_5q21.3"; transcript_id "HERVW_5q21.3"; locus "HERVW_5q21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0126"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 108574884 108577512 28868 - . gene_id "HERVW_5q21.3"; transcript_id "HERVW_5q21.3"; locus "HERVW_5q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0126"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6005"; repStart "0"; chr5 rmsk exon 108577806 108578582 28868 - . gene_id "HERVW_5q21.3"; transcript_id "HERVW_5q21.3"; locus "HERVW_5q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0126"; repClass "LTR"; repEnd "6004"; repFamily "ERV1"; repLeft "5227"; repStart "-2622"; ### ERV316A3_5q21.3c ### chr5 rmsk gene 108672657 108673962 . + . gene_id "ERV316A3_5q21.3c"; transcript_id "ERV316A3_5q21.3c"; locus "ERV316A3_5q21.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1092"; model_cov "1385"; model_pct "26.5"; chr5 rmsk exon 108672657 108673962 3698 + . gene_id "ERV316A3_5q21.3c"; transcript_id "ERV316A3_5q21.3c"; locus "ERV316A3_5q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1092"; repClass "LTR"; repEnd "1555"; repFamily "ERVL"; repLeft "-3671"; repStart "170"; ### ERV316A3_5q21.3d ### chr5 rmsk gene 109244717 109245876 . + . gene_id "ERV316A3_5q21.3d"; transcript_id "ERV316A3_5q21.3d"; locus "ERV316A3_5q21.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1093"; model_cov "690"; model_pct "13.2"; chr5 rmsk exon 109244717 109245374 1972 + . gene_id "ERV316A3_5q21.3d"; transcript_id "ERV316A3_5q21.3d"; locus "ERV316A3_5q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1093"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "-63"; repStart "4473"; chr5 rmsk exon 109245422 109245876 668 + . gene_id "ERV316A3_5q21.3d"; transcript_id "ERV316A3_5q21.3d"; locus "ERV316A3_5q21.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1093"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_5q21.3b ### chr5 rmsk gene 109248100 109249569 . - . gene_id "ERVLE_5q21.3b"; transcript_id "ERVLE_5q21.3b"; locus "ERVLE_5q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1442"; model_cov "961"; model_pct "17.0"; chr5 rmsk exon 109248100 109248258 540 - . gene_id "ERVLE_5q21.3b"; transcript_id "ERVLE_5q21.3b"; locus "ERVLE_5q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1442"; repClass "LTR"; repEnd "2221"; repFamily "ERVL"; repLeft "2061"; repStart "-3446"; chr5 rmsk exon 109248348 109248928 816 - . gene_id "ERVLE_5q21.3b"; transcript_id "ERVLE_5q21.3b"; locus "ERVLE_5q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1442"; repClass "LTR"; repEnd "1898"; repFamily "ERVL"; repLeft "1301"; repStart "-3769"; chr5 rmsk exon 109249375 109249569 304 - . gene_id "ERVLE_5q21.3b"; transcript_id "ERVLE_5q21.3b"; locus "ERVLE_5q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1442"; repClass "LTR"; repEnd "1300"; repFamily "ERVL"; repLeft "1096"; repStart "-4367"; ### ERVLB4_5q21.3a ### chr5 rmsk gene 109347949 109348565 . + . gene_id "ERVLB4_5q21.3a"; transcript_id "ERVLB4_5q21.3a"; locus "ERVLB4_5q21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0651"; model_cov "663"; model_pct "11.6"; chr5 rmsk exon 109347949 109348565 514 + . gene_id "ERVLB4_5q21.3a"; transcript_id "ERVLB4_5q21.3a"; locus "ERVLB4_5q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0651"; repClass "LTR"; repEnd "679"; repFamily "ERVL"; repLeft "-5035"; repStart "16"; ### ERVLE_5q21.3c ### chr5 rmsk gene 109348621 109349207 . + . gene_id "ERVLE_5q21.3c"; transcript_id "ERVLE_5q21.3c"; locus "ERVLE_5q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1443"; model_cov "634"; model_pct "11.2"; chr5 rmsk exon 109348621 109349207 820 + . gene_id "ERVLE_5q21.3c"; transcript_id "ERVLE_5q21.3c"; locus "ERVLE_5q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1443"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5032"; ### ERVLB4_5q21.3b ### chr5 rmsk gene 109581737 109585071 . - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0652"; model_cov "2847"; model_pct "49.8"; chr5 rmsk exon 109581737 109582019 727 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "3727"; repFamily "ERVL"; repLeft "3443"; repStart "-1987"; chr5 rmsk exon 109582526 109582805 890 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "3154"; repStart "-2271"; chr5 rmsk exon 109582799 109583869 2981 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "2575"; repFamily "ERVL"; repLeft "1458"; repStart "-3139"; chr5 rmsk exon 109583889 109584480 1104 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "1411"; repFamily "ERVL"; repLeft "709"; repStart "-4303"; chr5 rmsk exon 109584521 109584808 915 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "677"; repFamily "ERVL"; repLeft "363"; repStart "-5037"; chr5 rmsk exon 109584930 109585071 413 - . gene_id "ERVLB4_5q21.3b"; transcript_id "ERVLB4_5q21.3b"; locus "ERVLB4_5q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0652"; repClass "LTR"; repEnd "199"; repFamily "ERVL"; repLeft "58"; repStart "-5515"; ### ERVLE_5q21.3d ### chr5 rmsk gene 109686333 109686986 . - . gene_id "ERVLE_5q21.3d"; transcript_id "ERVLE_5q21.3d"; locus "ERVLE_5q21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1444"; model_cov "748"; model_pct "13.2"; chr5 rmsk exon 109686333 109686986 2617 - . gene_id "ERVLE_5q21.3d"; transcript_id "ERVLE_5q21.3d"; locus "ERVLE_5q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1444"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2009"; repStart "-2910"; ### ERVLE_5q21.3e ### chr5 rmsk gene 109687038 109687635 . - . gene_id "ERVLE_5q21.3e"; transcript_id "ERVLE_5q21.3e"; locus "ERVLE_5q21.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1445"; model_cov "687"; model_pct "12.1"; chr5 rmsk exon 109687038 109687635 2617 - . gene_id "ERVLE_5q21.3e"; transcript_id "ERVLE_5q21.3e"; locus "ERVLE_5q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1445"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2070"; repStart "-2910"; ### ERVLE_5q21.3f ### chr5 rmsk gene 110081026 110083743 . + . gene_id "ERVLE_5q21.3f"; transcript_id "ERVLE_5q21.3f"; locus "ERVLE_5q21.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1446"; model_cov "2271"; model_pct "40.1"; chr5 rmsk exon 110081026 110081582 858 + . gene_id "ERVLE_5q21.3f"; transcript_id "ERVLE_5q21.3f"; locus "ERVLE_5q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1446"; repClass "LTR"; repEnd "1447"; repFamily "ERVL"; repLeft "-4220"; repStart "865"; chr5 rmsk exon 110081604 110082198 1315 + . gene_id "ERVLE_5q21.3f"; transcript_id "ERVLE_5q21.3f"; locus "ERVLE_5q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1446"; repClass "LTR"; repEnd "2132"; repFamily "ERVL"; repLeft "-3535"; repStart "1497"; chr5 rmsk exon 110082176 110082836 1851 + . gene_id "ERVLE_5q21.3f"; transcript_id "ERVLE_5q21.3f"; locus "ERVLE_5q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1446"; repClass "LTR"; repEnd "4227"; repFamily "ERVL"; repLeft "-1440"; repStart "3534"; chr5 rmsk exon 110083394 110083743 539 + . gene_id "ERVLE_5q21.3f"; transcript_id "ERVLE_5q21.3f"; locus "ERVLE_5q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1446"; repClass "LTR"; repEnd "5231"; repFamily "ERVL"; repLeft "-436"; repStart "4870"; ### ERVLE_5q21.3g ### chr5 rmsk gene 110113084 110115281 . + . gene_id "ERVLE_5q21.3g"; transcript_id "ERVLE_5q21.3g"; locus "ERVLE_5q21.3g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1447"; model_cov "1142"; model_pct "20.2"; chr5 rmsk exon 110113084 110113937 3566 + . gene_id "ERVLE_5q21.3g"; transcript_id "ERVLE_5q21.3g"; locus "ERVLE_5q21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1447"; repClass "LTR"; repEnd "5259"; repFamily "ERVL"; repLeft "-408"; repStart "4369"; chr5 rmsk exon 110114551 110114786 829 + . gene_id "ERVLE_5q21.3g"; transcript_id "ERVLE_5q21.3g"; locus "ERVLE_5q21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1447"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "5400"; chr5 rmsk exon 110114812 110115281 1157 + . gene_id "ERVLE_5q21.3g"; transcript_id "ERVLE_5q21.3g"; locus "ERVLE_5q21.3g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1447"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "-165"; repStart "17"; ### HERVL_5q22.1a ### chr5 rmsk gene 110204112 110209648 . - . gene_id "HERVL_5q22.1a"; transcript_id "HERVL_5q22.1a"; locus "HERVL_5q22.1a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0545"; model_cov "4794"; model_pct "84.8"; chr5 rmsk exon 110204112 110208770 35182 - . gene_id "HERVL_5q22.1a"; transcript_id "HERVL_5q22.1a"; locus "HERVL_5q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0545"; repClass "LTR"; repEnd "4685"; repFamily "ERVL"; repLeft "1"; repStart "-969"; chr5 rmsk exon 110209538 110209648 778 - . gene_id "HERVL_5q22.1a"; transcript_id "HERVL_5q22.1a"; locus "HERVL_5q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0545"; repClass "LTR"; repEnd "3072"; repFamily "ERVL"; repLeft "2962"; repStart "-2582"; ### HERVL_5q22.1b ### chr5 rmsk gene 110315112 110317640 . - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0546"; model_cov "1573"; model_pct "27.8"; chr5 rmsk exon 110315112 110315216 3188 - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0546"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr5 rmsk exon 110315248 110315629 3188 - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0546"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; chr5 rmsk exon 110315630 110316021 2642 - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0546"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5255"; repStart "0"; chr5 rmsk exon 110316013 110317199 9134 - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0546"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "1"; repStart "-4479"; chr5 rmsk exon 110317200 110317640 3141 - . gene_id "HERVL_5q22.1b"; transcript_id "HERVL_5q22.1b"; locus "HERVL_5q22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0546"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_5q22.1a ### chr5 rmsk gene 110332422 110333505 . - . gene_id "ERV316A3_5q22.1a"; transcript_id "ERV316A3_5q22.1a"; locus "ERV316A3_5q22.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1094"; model_cov "653"; model_pct "12.5"; chr5 rmsk exon 110332422 110332796 915 - . gene_id "ERV316A3_5q22.1a"; transcript_id "ERV316A3_5q22.1a"; locus "ERV316A3_5q22.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1094"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "49"; repStart "-6"; chr5 rmsk exon 110332888 110333505 1850 - . gene_id "ERV316A3_5q22.1a"; transcript_id "ERV316A3_5q22.1a"; locus "ERV316A3_5q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1094"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "4524"; repStart "-49"; ### ERV316A3_5q22.1b ### chr5 rmsk gene 110333584 110335108 . - . gene_id "ERV316A3_5q22.1b"; transcript_id "ERV316A3_5q22.1b"; locus "ERV316A3_5q22.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1095"; model_cov "1552"; model_pct "29.7"; chr5 rmsk exon 110333584 110334638 1850 - . gene_id "ERV316A3_5q22.1b"; transcript_id "ERV316A3_5q22.1b"; locus "ERV316A3_5q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1095"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "4058"; repStart "-49"; chr5 rmsk exon 110334683 110335108 740 - . gene_id "ERV316A3_5q22.1b"; transcript_id "ERV316A3_5q22.1b"; locus "ERV316A3_5q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1095"; repClass "LTR"; repEnd "1711"; repFamily "ERVL"; repLeft "1278"; repStart "-3515"; ### HERVH_5q22.1 ### chr5 rmsk gene 110530936 110535513 . + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0498"; model_cov "3822"; model_pct "49.6"; chr5 rmsk exon 110530936 110531331 2594 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 110531334 110531628 2177 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "300"; repFamily "ERV1"; repLeft "-7413"; repStart "1"; chr5 rmsk exon 110531638 110533242 11086 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1382"; chr5 rmsk exon 110533237 110533382 838 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr5 rmsk exon 110533385 110533872 3295 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3501"; chr5 rmsk exon 110533875 110534535 4153 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 110534537 110534753 1435 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 110534747 110535117 2213 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7315"; chr5 rmsk exon 110535118 110535513 2607 + . gene_id "HERVH_5q22.1"; transcript_id "HERVH_5q22.1"; locus "HERVH_5q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0498"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV4_5q22.1 ### chr5 rmsk gene 110535808 110543151 . + . gene_id "HERV4_5q22.1"; transcript_id "HERV4_5q22.1"; locus "HERV4_5q22.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0047"; model_cov "6547"; model_pct "100.0"; chr5 rmsk exon 110535808 110536047 1600 + . gene_id "HERV4_5q22.1"; transcript_id "HERV4_5q22.1"; locus "HERV4_5q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0047"; repClass "LTR"; repEnd "242"; repFamily "ERV1"; repLeft "-392"; repStart "1"; chr5 rmsk exon 110536048 110536688 2833 + . gene_id "HERV4_5q22.1"; transcript_id "HERV4_5q22.1"; locus "HERV4_5q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0047"; repClass "LTR"; repEnd "-705"; repFamily "ERV1"; repLeft "-7244"; repStart "-1235"; chr5 rmsk exon 110536700 110542660 30195 + . gene_id "HERV4_5q22.1"; transcript_id "HERV4_5q22.1"; locus "HERV4_5q22.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0047"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "0"; repStart "522"; chr5 rmsk exon 110542661 110543151 2127 + . gene_id "HERV4_5q22.1"; transcript_id "HERV4_5q22.1"; locus "HERV4_5q22.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0047"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "-5"; ### MER41_5q22.1 ### chr5 rmsk gene 110825666 110830331 . + . gene_id "MER41_5q22.1"; transcript_id "MER41_5q22.1"; locus "MER41_5q22.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0189"; model_cov "6554"; model_pct "100.0"; chr5 rmsk exon 110825666 110827537 14281 + . gene_id "MER41_5q22.1"; transcript_id "MER41_5q22.1"; locus "MER41_5q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0189"; repClass "LTR"; repEnd "3475"; repFamily "ERV1"; repLeft "-2471"; repStart "632"; chr5 rmsk exon 110827828 110830331 14281 + . gene_id "MER41_5q22.1"; transcript_id "MER41_5q22.1"; locus "MER41_5q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0189"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "2234"; ### ERVLE_5q22.1a ### chr5 rmsk gene 110871700 110874913 . + . gene_id "ERVLE_5q22.1a"; transcript_id "ERVLE_5q22.1a"; locus "ERVLE_5q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1448"; model_cov "1773"; model_pct "31.3"; chr5 rmsk exon 110871700 110871821 451 + . gene_id "ERVLE_5q22.1a"; transcript_id "ERVLE_5q22.1a"; locus "ERVLE_5q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1448"; repClass "LTR"; repEnd "337"; repFamily "ERVL"; repLeft "-5330"; repStart "212"; chr5 rmsk exon 110873386 110874913 4918 + . gene_id "ERVLE_5q22.1a"; transcript_id "ERVLE_5q22.1a"; locus "ERVLE_5q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1448"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-490"; repStart "3529"; ### ERVLE_5q22.1b ### chr5 rmsk gene 111147729 111149651 . - . gene_id "ERVLE_5q22.1b"; transcript_id "ERVLE_5q22.1b"; locus "ERVLE_5q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1450"; model_cov "1148"; model_pct "20.3"; chr5 rmsk exon 111147729 111148546 3961 - . gene_id "ERVLE_5q22.1b"; transcript_id "ERVLE_5q22.1b"; locus "ERVLE_5q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1450"; repClass "LTR"; repEnd "5028"; repFamily "ERVL"; repLeft "4207"; repStart "-639"; chr5 rmsk exon 111149337 111149651 3961 - . gene_id "ERVLE_5q22.1b"; transcript_id "ERVLE_5q22.1b"; locus "ERVLE_5q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1450"; repClass "LTR"; repEnd "4206"; repFamily "ERVL"; repLeft "3879"; repStart "-1461"; ### ERVLE_5q22.1c ### chr5 rmsk gene 111289461 111290344 . - . gene_id "ERVLE_5q22.1c"; transcript_id "ERVLE_5q22.1c"; locus "ERVLE_5q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1451"; model_cov "856"; model_pct "15.1"; chr5 rmsk exon 111289461 111290344 983 - . gene_id "ERVLE_5q22.1c"; transcript_id "ERVLE_5q22.1c"; locus "ERVLE_5q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1451"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "4418"; repStart "-393"; ### MER61_5q22.1 ### chr5 rmsk gene 111663040 111667105 . - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0160"; model_cov "3457"; model_pct "66.3"; chr5 rmsk exon 111663040 111663371 1832 - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0160"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 111663372 111666231 19779 - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0160"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2325"; repStart "0"; chr5 rmsk exon 111666284 111666490 19779 - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0160"; repClass "LTR"; repEnd "2324"; repFamily "ERV1"; repLeft "2014"; repStart "-2893"; chr5 rmsk exon 111666533 111666789 933 - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0160"; repClass "LTR"; repEnd "256"; repFamily "ERV1"; repLeft "1"; repStart "-4961"; chr5 rmsk exon 111666790 111667105 1583 - . gene_id "MER61_5q22.1"; transcript_id "MER61_5q22.1"; locus "MER61_5q22.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0160"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_5q22.1 ### chr5 rmsk gene 111829865 111834291 . + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0165"; model_cov "2582"; model_pct "46.7"; chr5 rmsk exon 111829865 111830044 1290 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "-4735"; repStart "625"; chr5 rmsk exon 111830263 111831026 1326 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "-3919"; repStart "796"; chr5 rmsk exon 111831061 111831259 740 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "2721"; repFamily "ERVL"; repLeft "-2809"; repStart "2530"; chr5 rmsk exon 111831263 111832229 3229 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "-866"; repStart "3674"; chr5 rmsk exon 111832875 111833024 336 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "-378"; repStart "4989"; chr5 rmsk exon 111833516 111833815 1332 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5277"; chr5 rmsk exon 111833819 111834291 1632 + . gene_id "HERVL40_5q22.1"; transcript_id "HERVL40_5q22.1"; locus "HERVL40_5q22.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0165"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### HUERSP3_5q22.1 ### chr5 rmsk gene 111921173 111927118 . - . gene_id "HUERSP3_5q22.1"; transcript_id "HUERSP3_5q22.1"; locus "HUERSP3_5q22.1"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0070"; model_cov "5166"; model_pct "57.9"; chr5 rmsk exon 111921173 111921323 715 - . gene_id "HUERSP3_5q22.1"; transcript_id "HUERSP3_5q22.1"; locus "HUERSP3_5q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0070"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8767"; repStart "-1"; chr5 rmsk exon 111922067 111927118 27644 - . gene_id "HUERSP3_5q22.1"; transcript_id "HUERSP3_5q22.1"; locus "HUERSP3_5q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0070"; repClass "LTR"; repEnd "6146"; repFamily "ERV1"; repLeft "1131"; repStart "-2773"; ### HERVL_5q22.1c ### chr5 rmsk gene 112041296 112047517 . - . gene_id "HERVL_5q22.1c"; transcript_id "HERVL_5q22.1c"; locus "HERVL_5q22.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0547"; model_cov "5499"; model_pct "97.3"; chr5 rmsk exon 112041296 112041798 40481 - . gene_id "HERVL_5q22.1c"; transcript_id "HERVL_5q22.1c"; locus "HERVL_5q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0547"; repClass "LTR"; repEnd "5501"; repFamily "ERVL"; repLeft "4961"; repStart "-153"; chr5 rmsk exon 112042106 112047072 40481 - . gene_id "HERVL_5q22.1c"; transcript_id "HERVL_5q22.1c"; locus "HERVL_5q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0547"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "1"; repStart "-694"; chr5 rmsk exon 112047073 112047517 3269 - . gene_id "HERVL_5q22.1c"; transcript_id "HERVL_5q22.1c"; locus "HERVL_5q22.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0547"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_5q22.1 ### chr5 rmsk gene 112104633 112105435 . + . gene_id "ERVLB4_5q22.1"; transcript_id "ERVLB4_5q22.1"; locus "ERVLB4_5q22.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0654"; model_cov "761"; model_pct "13.3"; chr5 rmsk exon 112104633 112104950 564 + . gene_id "ERVLB4_5q22.1"; transcript_id "ERVLB4_5q22.1"; locus "ERVLB4_5q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0654"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "-779"; repStart "4533"; chr5 rmsk exon 112105212 112105435 426 + . gene_id "ERVLB4_5q22.1"; transcript_id "ERVLB4_5q22.1"; locus "ERVLB4_5q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0654"; repClass "LTR"; repEnd "5295"; repFamily "ERVL"; repLeft "-419"; repStart "4936"; ### ERVLE_5q22.2a ### chr5 rmsk gene 112355855 112358227 . + . gene_id "ERVLE_5q22.2a"; transcript_id "ERVLE_5q22.2a"; locus "ERVLE_5q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1452"; model_cov "2368"; model_pct "41.8"; chr5 rmsk exon 112355855 112356023 538 + . gene_id "ERVLE_5q22.2a"; transcript_id "ERVLE_5q22.2a"; locus "ERVLE_5q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1452"; repClass "LTR"; repEnd "2084"; repFamily "ERVL"; repLeft "-3583"; repStart "1903"; chr5 rmsk exon 112356138 112357464 3432 + . gene_id "ERVLE_5q22.2a"; transcript_id "ERVLE_5q22.2a"; locus "ERVLE_5q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1452"; repClass "LTR"; repEnd "3485"; repFamily "ERVL"; repLeft "-2182"; repStart "2074"; chr5 rmsk exon 112357477 112358227 2248 + . gene_id "ERVLE_5q22.2a"; transcript_id "ERVLE_5q22.2a"; locus "ERVLE_5q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1452"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1377"; repStart "3514"; ### HERVW_5q22.2 ### chr5 rmsk gene 112443692 112451498 . + . gene_id "HERVW_5q22.2"; transcript_id "HERVW_5q22.2"; locus "HERVW_5q22.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0127"; model_cov "6307"; model_pct "73.1"; chr5 rmsk exon 112443692 112444458 6051 + . gene_id "HERVW_5q22.2"; transcript_id "HERVW_5q22.2"; locus "HERVW_5q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0127"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 112444459 112450410 46401 + . gene_id "HERVW_5q22.2"; transcript_id "HERVW_5q22.2"; locus "HERVW_5q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0127"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "-2609"; repStart "1"; chr5 rmsk exon 112450435 112450726 2352 + . gene_id "HERVW_5q22.2"; transcript_id "HERVW_5q22.2"; locus "HERVW_5q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0127"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr5 rmsk exon 112450727 112451498 5986 + . gene_id "HERVW_5q22.2"; transcript_id "HERVW_5q22.2"; locus "HERVW_5q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0127"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVEA_5q22.2 ### chr5 rmsk gene 112523903 112532633 . + . gene_id "HERVEA_5q22.2"; transcript_id "HERVEA_5q22.2"; locus "HERVEA_5q22.2"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0038"; model_cov "7846"; model_pct "100.0"; chr5 rmsk exon 112523903 112524344 3675 + . gene_id "HERVEA_5q22.2"; transcript_id "HERVEA_5q22.2"; locus "HERVEA_5q22.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0038"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 112524345 112532191 65945 + . gene_id "HERVEA_5q22.2"; transcript_id "HERVEA_5q22.2"; locus "HERVEA_5q22.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0038"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 112532192 112532633 3646 + . gene_id "HERVEA_5q22.2"; transcript_id "HERVEA_5q22.2"; locus "HERVEA_5q22.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0038"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q22.2b ### chr5 rmsk gene 112547505 112549086 . + . gene_id "ERVLE_5q22.2b"; transcript_id "ERVLE_5q22.2b"; locus "ERVLE_5q22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1453"; model_cov "646"; model_pct "11.4"; chr5 rmsk exon 112547505 112547993 2322 + . gene_id "ERVLE_5q22.2b"; transcript_id "ERVLE_5q22.2b"; locus "ERVLE_5q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1453"; repClass "LTR"; repEnd "4969"; repFamily "ERVL"; repLeft "-698"; repStart "4481"; chr5 rmsk exon 112548933 112549086 2322 + . gene_id "ERVLE_5q22.2b"; transcript_id "ERVLE_5q22.2b"; locus "ERVLE_5q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1453"; repClass "LTR"; repEnd "5128"; repFamily "ERVL"; repLeft "-539"; repStart "4970"; ### HERVL32_5q22.2a ### chr5 rmsk gene 112579908 112582855 . + . gene_id "HERVL32_5q22.2a"; transcript_id "HERVL32_5q22.2a"; locus "HERVL32_5q22.2a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0021"; model_cov "2516"; model_pct "73.6"; chr5 rmsk exon 112579908 112580323 2537 + . gene_id "HERVL32_5q22.2a"; transcript_id "HERVL32_5q22.2a"; locus "HERVL32_5q22.2a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0021"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-1"; repStart "32"; chr5 rmsk exon 112580325 112581038 2712 + . gene_id "HERVL32_5q22.2a"; transcript_id "HERVL32_5q22.2a"; locus "HERVL32_5q22.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0021"; repClass "LTR"; repEnd "715"; repFamily "ERVL"; repLeft "-2703"; repStart "1"; chr5 rmsk exon 112581043 112582855 6557 + . gene_id "HERVL32_5q22.2a"; transcript_id "HERVL32_5q22.2a"; locus "HERVL32_5q22.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0021"; repClass "LTR"; repEnd "3213"; repFamily "ERVL"; repLeft "-205"; repStart "1411"; ### HERVL32_5q22.2b ### chr5 rmsk gene 112583255 112585456 . + . gene_id "HERVL32_5q22.2b"; transcript_id "HERVL32_5q22.2b"; locus "HERVL32_5q22.2b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0022"; model_cov "357"; model_pct "10.4"; chr5 rmsk exon 112583255 112583421 280 + . gene_id "HERVL32_5q22.2b"; transcript_id "HERVL32_5q22.2b"; locus "HERVL32_5q22.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0022"; repClass "LTR"; repEnd "2320"; repFamily "ERVL"; repLeft "-1098"; repStart "2158"; chr5 rmsk exon 112584808 112584999 737 + . gene_id "HERVL32_5q22.2b"; transcript_id "HERVL32_5q22.2b"; locus "HERVL32_5q22.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0022"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "-6"; repStart "3217"; chr5 rmsk exon 112585008 112585456 2653 + . gene_id "HERVL32_5q22.2b"; transcript_id "HERVL32_5q22.2b"; locus "HERVL32_5q22.2b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0022"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFRD_5q22.2 ### chr5 rmsk gene 112608039 112610488 . + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0071"; model_cov "1366"; model_pct "19.0"; chr5 rmsk exon 112608039 112609062 4910 + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0071"; repClass "LTR"; repEnd "3950"; repFamily "ERV1"; repLeft "-3255"; repStart "2944"; chr5 rmsk exon 112609062 112609696 2571 + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0071"; repClass "LTR"; repEnd "7203"; repFamily "ERV1"; repLeft "-2"; repStart "6843"; chr5 rmsk exon 112609697 112609924 1331 + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0071"; repClass "LTR"; repEnd "245"; repFamily "ERV1"; repLeft "-489"; repStart "18"; chr5 rmsk exon 112609908 112610034 1720 + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0071"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "-161"; repStart "447"; chr5 rmsk exon 112610344 112610488 1720 + . gene_id "HERVFRD_5q22.2"; transcript_id "HERVFRD_5q22.2"; locus "HERVFRD_5q22.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0071"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "-24"; repStart "574"; ### ERVL_5q22.2 ### chr5 rmsk gene 112614332 112616265 . - . gene_id "ERVL_5q22.2"; transcript_id "ERVL_5q22.2"; locus "ERVL_5q22.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0147"; model_cov "1325"; model_pct "23.0"; chr5 rmsk exon 112614332 112614710 1960 - . gene_id "ERVL_5q22.2"; transcript_id "ERVL_5q22.2"; locus "ERVL_5q22.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0147"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "126"; repStart "0"; chr5 rmsk exon 112614926 112616265 8515 - . gene_id "ERVL_5q22.2"; transcript_id "ERVL_5q22.2"; locus "ERVL_5q22.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0147"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "3938"; repStart "-494"; ### ERVLE_5q22.2c ### chr5 rmsk gene 113132479 113133003 . - . gene_id "ERVLE_5q22.2c"; transcript_id "ERVLE_5q22.2c"; locus "ERVLE_5q22.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1454"; model_cov "579"; model_pct "10.2"; chr5 rmsk exon 113132479 113133003 1582 - . gene_id "ERVLE_5q22.2c"; transcript_id "ERVLE_5q22.2c"; locus "ERVLE_5q22.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1454"; repClass "LTR"; repEnd "5321"; repFamily "ERVL"; repLeft "4742"; repStart "-346"; ### ERVLE_5q22.2d ### chr5 rmsk gene 113136161 113140639 . - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1455"; model_cov "963"; model_pct "17.0"; chr5 rmsk exon 113136161 113136304 403 - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1455"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "5128"; repStart "-391"; chr5 rmsk exon 113137783 113137874 321 - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1455"; repClass "LTR"; repEnd "4651"; repFamily "ERVL"; repLeft "4547"; repStart "-1016"; chr5 rmsk exon 113138881 113139180 885 - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1455"; repClass "LTR"; repEnd "1732"; repFamily "ERVL"; repLeft "1431"; repStart "-3935"; chr5 rmsk exon 113139213 113139478 366 - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1455"; repClass "LTR"; repEnd "1186"; repFamily "ERVL"; repLeft "915"; repStart "-4481"; chr5 rmsk exon 113140508 113140639 321 - . gene_id "ERVLE_5q22.2d"; transcript_id "ERVLE_5q22.2d"; locus "ERVLE_5q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1455"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "304"; repStart "-5224"; ### HUERSP3B_5q22.2 ### chr5 rmsk gene 113605569 113611347 . + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0055"; model_cov "4533"; model_pct "61.1"; chr5 rmsk exon 113605569 113606218 3546 + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0055"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr5 rmsk exon 113606273 113607733 4794 + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0055"; repClass "LTR"; repEnd "492"; repFamily "ERV1"; repLeft "-6926"; repStart "-1258"; chr5 rmsk exon 113607741 113608279 3356 + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0055"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2102"; chr5 rmsk exon 113608707 113609036 12204 + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0055"; repClass "LTR"; repEnd "3401"; repFamily "ERV1"; repLeft "-4017"; repStart "3073"; chr5 rmsk exon 113609345 113611347 12204 + . gene_id "HUERSP3B_5q22.2"; transcript_id "HUERSP3B_5q22.2"; locus "HUERSP3B_5q22.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0055"; repClass "LTR"; repEnd "5317"; repFamily "ERV1"; repLeft "-2101"; repStart "3402"; ### ERV316A3_5q22.2a ### chr5 rmsk gene 113707793 113708744 . + . gene_id "ERV316A3_5q22.2a"; transcript_id "ERV316A3_5q22.2a"; locus "ERV316A3_5q22.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1098"; model_cov "991"; model_pct "19.0"; chr5 rmsk exon 113707793 113708744 2692 + . gene_id "ERV316A3_5q22.2a"; transcript_id "ERV316A3_5q22.2a"; locus "ERV316A3_5q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1098"; repClass "LTR"; repEnd "4344"; repFamily "ERVL"; repLeft "-882"; repStart "3353"; ### ERV316A3_5q22.2b ### chr5 rmsk gene 113708768 113709991 . - . gene_id "ERV316A3_5q22.2b"; transcript_id "ERV316A3_5q22.2b"; locus "ERV316A3_5q22.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1099"; model_cov "816"; model_pct "15.6"; chr5 rmsk exon 113708768 113709213 927 - . gene_id "ERV316A3_5q22.2b"; transcript_id "ERV316A3_5q22.2b"; locus "ERV316A3_5q22.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1099"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr5 rmsk exon 113709214 113709991 2622 - . gene_id "ERV316A3_5q22.2b"; transcript_id "ERV316A3_5q22.2b"; locus "ERV316A3_5q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1099"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4410"; repStart "0"; ### HML3_5q22.2 ### chr5 rmsk gene 113711920 113716616 . + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0096"; model_cov "3612"; model_pct "60.0"; chr5 rmsk exon 113711920 113712431 4181 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr5 rmsk exon 113712433 113713026 4526 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr5 rmsk exon 113713027 113714545 12126 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1280"; chr5 rmsk exon 113714548 113714775 1750 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3725"; chr5 rmsk exon 113714842 113716096 9604 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4758"; chr5 rmsk exon 113716097 113716616 4196 + . gene_id "HML3_5q22.2"; transcript_id "HML3_5q22.2"; locus "HML3_5q22.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0096"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV4_5q22.2 ### chr5 rmsk gene 113771385 113777681 . - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0048"; model_cov "4673"; model_pct "71.5"; chr5 rmsk exon 113771385 113771989 3685 - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0048"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 113771995 113773193 27662 - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0048"; repClass "LTR"; repEnd "6534"; repFamily "ERV1"; repLeft "5330"; repStart "-5"; chr5 rmsk exon 113773440 113775908 27662 - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0048"; repClass "LTR"; repEnd "5329"; repFamily "ERV1"; repLeft "2891"; repStart "-1210"; chr5 rmsk exon 113775910 113776964 5189 - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0048"; repClass "LTR"; repEnd "1032"; repFamily "ERV1"; repLeft "1"; repStart "-5507"; chr5 rmsk exon 113776988 113777681 2882 - . gene_id "HERV4_5q22.2"; transcript_id "HERV4_5q22.2"; locus "HERV4_5q22.2"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0048"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "1"; repStart "-9"; ### ERVLE_5q22.3a ### chr5 rmsk gene 113902396 113903364 . - . gene_id "ERVLE_5q22.3a"; transcript_id "ERVLE_5q22.3a"; locus "ERVLE_5q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1456"; model_cov "1004"; model_pct "17.7"; chr5 rmsk exon 113902396 113903364 1837 - . gene_id "ERVLE_5q22.3a"; transcript_id "ERVLE_5q22.3a"; locus "ERVLE_5q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1456"; repClass "LTR"; repEnd "3543"; repFamily "ERVL"; repLeft "2539"; repStart "-2124"; ### ERVLE_5q22.3b ### chr5 rmsk gene 114027777 114031826 . + . gene_id "ERVLE_5q22.3b"; transcript_id "ERVLE_5q22.3b"; locus "ERVLE_5q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1457"; model_cov "2213"; model_pct "39.1"; chr5 rmsk exon 114027777 114027947 407 + . gene_id "ERVLE_5q22.3b"; transcript_id "ERVLE_5q22.3b"; locus "ERVLE_5q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1457"; repClass "LTR"; repEnd "1290"; repFamily "ERVL"; repLeft "-4377"; repStart "1113"; chr5 rmsk exon 114029481 114031039 4590 + . gene_id "ERVLE_5q22.3b"; transcript_id "ERVLE_5q22.3b"; locus "ERVLE_5q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1457"; repClass "LTR"; repEnd "4805"; repFamily "ERVL"; repLeft "-862"; repStart "3199"; chr5 rmsk exon 114031402 114031826 4590 + . gene_id "ERVLE_5q22.3b"; transcript_id "ERVLE_5q22.3b"; locus "ERVLE_5q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1457"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-431"; repStart "4806"; ### HERVK11D_5q22.3 ### chr5 rmsk gene 114142955 114150230 . - . gene_id "HERVK11D_5q22.3"; transcript_id "HERVK11D_5q22.3"; locus "HERVK11D_5q22.3"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0012"; model_cov "7751"; model_pct "100.0"; chr5 rmsk exon 114142955 114143829 6694 - . gene_id "HERVK11D_5q22.3"; transcript_id "HERVK11D_5q22.3"; locus "HERVK11D_5q22.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0012"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 114143830 114149353 36715 - . gene_id "HERVK11D_5q22.3"; transcript_id "HERVK11D_5q22.3"; locus "HERVK11D_5q22.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0012"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 114149354 114150230 7056 - . gene_id "HERVK11D_5q22.3"; transcript_id "HERVK11D_5q22.3"; locus "HERVK11D_5q22.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0012"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_5q22.3c ### chr5 rmsk gene 114304099 114307874 . - . gene_id "ERVLE_5q22.3c"; transcript_id "ERVLE_5q22.3c"; locus "ERVLE_5q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1459"; model_cov "2744"; model_pct "48.4"; chr5 rmsk exon 114304099 114305002 2386 - . gene_id "ERVLE_5q22.3c"; transcript_id "ERVLE_5q22.3c"; locus "ERVLE_5q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1459"; repClass "LTR"; repEnd "3696"; repFamily "ERVL"; repLeft "2758"; repStart "-1971"; chr5 rmsk exon 114305929 114306687 2091 - . gene_id "ERVLE_5q22.3c"; transcript_id "ERVLE_5q22.3c"; locus "ERVLE_5q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1459"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "1964"; repStart "-2904"; chr5 rmsk exon 114306993 114307874 2091 - . gene_id "ERVLE_5q22.3c"; transcript_id "ERVLE_5q22.3c"; locus "ERVLE_5q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1459"; repClass "LTR"; repEnd "1963"; repFamily "ERVL"; repLeft "956"; repStart "-3704"; ### LTR19_5q22.3 ### chr5 rmsk gene 114722653 114726555 . + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0016"; model_cov "3036"; model_pct "54.4"; chr5 rmsk exon 114722653 114723094 2860 + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0016"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "18"; chr5 rmsk exon 114723095 114723256 1106 + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0016"; repClass "LTR"; repEnd "171"; repFamily "ERV1"; repLeft "-5415"; repStart "1"; chr5 rmsk exon 114723252 114725642 18325 + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0016"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "-1205"; repStart "1975"; chr5 rmsk exon 114725638 114726104 3541 + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0016"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "5126"; chr5 rmsk exon 114726105 114726555 3167 + . gene_id "LTR19_5q22.3"; transcript_id "LTR19_5q22.3"; locus "LTR19_5q22.3"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0016"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-14"; repStart "1"; ### HERV9_5q22.3 ### chr5 rmsk gene 114989528 115000106 . + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0058"; model_cov "8434"; model_pct "100.0"; chr5 rmsk exon 114989528 114990435 5391 + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0058"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr5 rmsk exon 114990436 114991900 42269 + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0058"; repClass "LTR"; repEnd "1382"; repFamily "ERV1"; repLeft "-7054"; repStart "1"; chr5 rmsk exon 114992202 114999162 42269 + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0058"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1383"; chr5 rmsk exon 114999163 114999979 4863 + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0058"; repClass "LTR"; repEnd "1005"; repFamily "ERV1"; repLeft "-249"; repStart "1"; chr5 rmsk exon 115000001 115000106 797 + . gene_id "HERV9_5q22.3"; transcript_id "HERV9_5q22.3"; locus "HERV9_5q22.3"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0058"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "1475"; ### HML3_5q22.3 ### chr5 rmsk gene 115036095 115042278 . - . gene_id "HML3_5q22.3"; transcript_id "HML3_5q22.3"; locus "HML3_5q22.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0097"; model_cov "5230"; model_pct "86.9"; chr5 rmsk exon 115036095 115036575 3735 - . gene_id "HML3_5q22.3"; transcript_id "HML3_5q22.3"; locus "HML3_5q22.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0097"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 115036576 115041207 37415 - . gene_id "HML3_5q22.3"; transcript_id "HML3_5q22.3"; locus "HML3_5q22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0097"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1360"; repStart "0"; chr5 rmsk exon 115041209 115041770 4196 - . gene_id "HML3_5q22.3"; transcript_id "HML3_5q22.3"; locus "HML3_5q22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0097"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "54"; repStart "-5398"; chr5 rmsk exon 115041798 115042278 3788 - . gene_id "HML3_5q22.3"; transcript_id "HML3_5q22.3"; locus "HML3_5q22.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0097"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_5q22.3a ### chr5 rmsk gene 115072552 115074029 . - . gene_id "HUERSP3_5q22.3a"; transcript_id "HUERSP3_5q22.3a"; locus "HUERSP3_5q22.3a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0071"; model_cov "894"; model_pct "10.0"; chr5 rmsk exon 115072552 115073146 2664 - . gene_id "HUERSP3_5q22.3a"; transcript_id "HUERSP3_5q22.3a"; locus "HUERSP3_5q22.3a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0071"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr5 rmsk exon 115073150 115074029 6171 - . gene_id "HUERSP3_5q22.3a"; transcript_id "HUERSP3_5q22.3a"; locus "HUERSP3_5q22.3a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0071"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8025"; repStart "0"; ### HUERSP3_5q22.3b ### chr5 rmsk gene 115077136 115085288 . - . gene_id "HUERSP3_5q22.3b"; transcript_id "HUERSP3_5q22.3b"; locus "HUERSP3_5q22.3b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0072"; model_cov "7679"; model_pct "86.1"; chr5 rmsk exon 115077136 115077842 5400 - . gene_id "HUERSP3_5q22.3b"; transcript_id "HUERSP3_5q22.3b"; locus "HUERSP3_5q22.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0072"; repClass "LTR"; repEnd "8026"; repFamily "ERV1"; repLeft "7324"; repStart "-893"; chr5 rmsk exon 115078140 115078306 5400 - . gene_id "HUERSP3_5q22.3b"; transcript_id "HUERSP3_5q22.3b"; locus "HUERSP3_5q22.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0072"; repClass "LTR"; repEnd "7323"; repFamily "ERV1"; repLeft "7166"; repStart "-1596"; chr5 rmsk exon 115078281 115084865 41451 - . gene_id "HUERSP3_5q22.3b"; transcript_id "HUERSP3_5q22.3b"; locus "HUERSP3_5q22.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0072"; repClass "LTR"; repEnd "6825"; repFamily "ERV1"; repLeft "126"; repStart "-2094"; chr5 rmsk exon 115085169 115085288 3252 - . gene_id "HUERSP3_5q22.3b"; transcript_id "HUERSP3_5q22.3b"; locus "HUERSP3_5q22.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0072"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "4"; repStart "-8794"; ### ERVLE_5q22.3d ### chr5 rmsk gene 115085715 115087935 . + . gene_id "ERVLE_5q22.3d"; transcript_id "ERVLE_5q22.3d"; locus "ERVLE_5q22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1462"; model_cov "1177"; model_pct "20.8"; chr5 rmsk exon 115085715 115085907 496 + . gene_id "ERVLE_5q22.3d"; transcript_id "ERVLE_5q22.3d"; locus "ERVLE_5q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1462"; repClass "LTR"; repEnd "4180"; repFamily "ERVL"; repLeft "-1487"; repStart "3976"; chr5 rmsk exon 115086578 115087101 1500 + . gene_id "ERVLE_5q22.3d"; transcript_id "ERVLE_5q22.3d"; locus "ERVLE_5q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1462"; repClass "LTR"; repEnd "4698"; repFamily "ERVL"; repLeft "-969"; repStart "4168"; chr5 rmsk exon 115087466 115087745 1500 + . gene_id "ERVLE_5q22.3d"; transcript_id "ERVLE_5q22.3d"; locus "ERVLE_5q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1462"; repClass "LTR"; repEnd "4999"; repFamily "ERVL"; repLeft "-668"; repStart "4699"; chr5 rmsk exon 115087792 115087935 400 + . gene_id "ERVLE_5q22.3d"; transcript_id "ERVLE_5q22.3d"; locus "ERVLE_5q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1462"; repClass "LTR"; repEnd "5502"; repFamily "ERVL"; repLeft "-165"; repStart "5359"; ### HUERSP3_5q22.3c ### chr5 rmsk gene 115327000 115328864 . + . gene_id "HUERSP3_5q22.3c"; transcript_id "HUERSP3_5q22.3c"; locus "HUERSP3_5q22.3c"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0073"; model_cov "1662"; model_pct "18.6"; chr5 rmsk exon 115327000 115328642 10793 + . gene_id "HUERSP3_5q22.3c"; transcript_id "HUERSP3_5q22.3c"; locus "HUERSP3_5q22.3c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0073"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "-4"; repStart "7253"; chr5 rmsk exon 115328650 115328817 1061 + . gene_id "HUERSP3_5q22.3c"; transcript_id "HUERSP3_5q22.3c"; locus "HUERSP3_5q22.3c"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0073"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "-450"; repStart "5"; chr5 rmsk exon 115328816 115328864 328 + . gene_id "HUERSP3_5q22.3c"; transcript_id "HUERSP3_5q22.3c"; locus "HUERSP3_5q22.3c"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0073"; repClass "LTR"; repEnd "180"; repFamily "ERV1"; repLeft "-464"; repStart "131"; ### ERVLE_5q22.3e ### chr5 rmsk gene 115604301 115605777 . + . gene_id "ERVLE_5q22.3e"; transcript_id "ERVLE_5q22.3e"; locus "ERVLE_5q22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1464"; model_cov "1528"; model_pct "27.0"; chr5 rmsk exon 115604301 115605777 3504 + . gene_id "ERVLE_5q22.3e"; transcript_id "ERVLE_5q22.3e"; locus "ERVLE_5q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1464"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "-470"; repStart "3669"; ### ERVLE_5q22.3f ### chr5 rmsk gene 115636366 115637552 . - . gene_id "ERVLE_5q22.3f"; transcript_id "ERVLE_5q22.3f"; locus "ERVLE_5q22.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1465"; model_cov "708"; model_pct "12.5"; chr5 rmsk exon 115636366 115636842 430 - . gene_id "ERVLE_5q22.3f"; transcript_id "ERVLE_5q22.3f"; locus "ERVLE_5q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1465"; repClass "LTR"; repEnd "1752"; repFamily "ERVL"; repLeft "1257"; repStart "-3915"; chr5 rmsk exon 115637346 115637552 304 - . gene_id "ERVLE_5q22.3f"; transcript_id "ERVLE_5q22.3f"; locus "ERVLE_5q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1465"; repClass "LTR"; repEnd "637"; repFamily "ERVL"; repLeft "424"; repStart "-5030"; ### HERVH_5q22.3 ### chr5 rmsk gene 115650820 115654984 . + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0499"; model_cov "3279"; model_pct "42.5"; chr5 rmsk exon 115650820 115651207 2605 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 115651208 115651611 964 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr5 rmsk exon 115651693 115653778 11576 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "792"; chr5 rmsk exon 115653779 115654413 3789 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3357"; chr5 rmsk exon 115654485 115654646 900 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "-2"; repStart "7551"; chr5 rmsk exon 115654651 115654984 2888 + . gene_id "HERVH_5q22.3"; transcript_id "HERVH_5q22.3"; locus "HERVH_5q22.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0499"; repClass "LTR"; repEnd "345"; repFamily "ERV1"; repLeft "-119"; repStart "3"; ### HERVL_5q22.3 ### chr5 rmsk gene 115724655 115731535 . - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0548"; model_cov "5652"; model_pct "100.0"; chr5 rmsk exon 115724655 115725098 3363 - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0548"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 115725099 115725231 41952 - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0548"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5513"; repStart "0"; chr5 rmsk exon 115725516 115730967 41952 - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0548"; repClass "LTR"; repEnd "5512"; repFamily "ERVL"; repLeft "1"; repStart "-142"; chr5 rmsk exon 115730968 115731052 254 - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0548"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr5 rmsk exon 115731148 115731535 2710 - . gene_id "HERVL_5q22.3"; transcript_id "HERVL_5q22.3"; locus "HERVL_5q22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0548"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "-47"; ### ERV316A3_5q23.1a ### chr5 rmsk gene 115921469 115926292 . + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1100"; model_cov "4233"; model_pct "81.0"; chr5 rmsk exon 115921469 115921861 1085 + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1100"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 115921870 115921901 1256 + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1100"; repClass "LTR"; repEnd "262"; repFamily "ERVL"; repLeft "-4964"; repStart "231"; chr5 rmsk exon 115922207 115922601 1256 + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1100"; repClass "LTR"; repEnd "678"; repFamily "ERVL"; repLeft "-4548"; repStart "263"; chr5 rmsk exon 115922730 115925043 3734 + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1100"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-1862"; repStart "972"; chr5 rmsk exon 115925050 115926292 3106 + . gene_id "ERV316A3_5q23.1a"; transcript_id "ERV316A3_5q23.1a"; locus "ERV316A3_5q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1100"; repClass "LTR"; repEnd "4481"; repFamily "ERVL"; repLeft "-745"; repStart "3086"; ### MER61_5q23.1 ### chr5 rmsk gene 116343832 116348871 . - . gene_id "MER61_5q23.1"; transcript_id "MER61_5q23.1"; locus "MER61_5q23.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0161"; model_cov "5444"; model_pct "100.0"; chr5 rmsk exon 116343832 116344162 1897 - . gene_id "MER61_5q23.1"; transcript_id "MER61_5q23.1"; locus "MER61_5q23.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0161"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 116344163 116347860 21072 - . gene_id "MER61_5q23.1"; transcript_id "MER61_5q23.1"; locus "MER61_5q23.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0161"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-668"; repStart "-1139"; chr5 rmsk exon 116347899 116348570 3198 - . gene_id "MER61_5q23.1"; transcript_id "MER61_5q23.1"; locus "MER61_5q23.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0161"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "2"; repStart "-4517"; chr5 rmsk exon 116348572 116348871 1614 - . gene_id "MER61_5q23.1"; transcript_id "MER61_5q23.1"; locus "MER61_5q23.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0161"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_5q23.1 ### chr5 rmsk gene 116353049 116354521 . + . gene_id "ERVLB4_5q23.1"; transcript_id "ERVLB4_5q23.1"; locus "ERVLB4_5q23.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0655"; model_cov "1155"; model_pct "20.2"; chr5 rmsk exon 116353049 116354156 6958 + . gene_id "ERVLB4_5q23.1"; transcript_id "ERVLB4_5q23.1"; locus "ERVLB4_5q23.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0655"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4559"; chr5 rmsk exon 116354158 116354521 1838 + . gene_id "ERVLB4_5q23.1"; transcript_id "ERVLB4_5q23.1"; locus "ERVLB4_5q23.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0655"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-126"; repStart "2"; ### ERV316A3_5q23.1b ### chr5 rmsk gene 116627992 116630268 . + . gene_id "ERV316A3_5q23.1b"; transcript_id "ERV316A3_5q23.1b"; locus "ERV316A3_5q23.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1101"; model_cov "1746"; model_pct "33.4"; chr5 rmsk exon 116627992 116629463 3231 + . gene_id "ERV316A3_5q23.1b"; transcript_id "ERV316A3_5q23.1b"; locus "ERV316A3_5q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1101"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "-416"; repStart "3307"; chr5 rmsk exon 116629529 116629780 690 + . gene_id "ERV316A3_5q23.1b"; transcript_id "ERV316A3_5q23.1b"; locus "ERV316A3_5q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1101"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4933"; chr5 rmsk exon 116629838 116630268 1167 + . gene_id "ERV316A3_5q23.1b"; transcript_id "ERV316A3_5q23.1b"; locus "ERV316A3_5q23.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1101"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-6"; repStart "9"; ### HARLEQUIN_5q23.1 ### chr5 rmsk gene 116704677 116709645 . + . gene_id "HARLEQUIN_5q23.1"; transcript_id "HARLEQUIN_5q23.1"; locus "HARLEQUIN_5q23.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0076"; model_cov "4033"; model_pct "58.5"; chr5 rmsk exon 116704677 116705151 1833 + . gene_id "HARLEQUIN_5q23.1"; transcript_id "HARLEQUIN_5q23.1"; locus "HARLEQUIN_5q23.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0076"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-29"; repStart "6"; chr5 rmsk exon 116705154 116709055 27874 + . gene_id "HARLEQUIN_5q23.1"; transcript_id "HARLEQUIN_5q23.1"; locus "HARLEQUIN_5q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0076"; repClass "LTR"; repEnd "5710"; repFamily "ERV1"; repLeft "-1186"; repStart "1784"; chr5 rmsk exon 116709055 116709165 627 + . gene_id "HARLEQUIN_5q23.1"; transcript_id "HARLEQUIN_5q23.1"; locus "HARLEQUIN_5q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0076"; repClass "LTR"; repEnd "6891"; repFamily "ERV1"; repLeft "-5"; repStart "6784"; chr5 rmsk exon 116709169 116709645 2310 + . gene_id "HARLEQUIN_5q23.1"; transcript_id "HARLEQUIN_5q23.1"; locus "HARLEQUIN_5q23.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0076"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_5q23.1a ### chr5 rmsk gene 117003806 117006003 . - . gene_id "MER41_5q23.1a"; transcript_id "MER41_5q23.1a"; locus "MER41_5q23.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0190"; model_cov "1267"; model_pct "21.3"; chr5 rmsk exon 117003806 117004329 2607 - . gene_id "MER41_5q23.1a"; transcript_id "MER41_5q23.1a"; locus "MER41_5q23.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0190"; repClass "LTR"; repEnd "4484"; repFamily "ERV1"; repLeft "3964"; repStart "-1462"; chr5 rmsk exon 117004757 117004815 384 - . gene_id "MER41_5q23.1a"; transcript_id "MER41_5q23.1a"; locus "MER41_5q23.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0190"; repClass "LTR"; repEnd "1959"; repFamily "ERV1"; repLeft "1901"; repStart "-3987"; chr5 rmsk exon 117005170 117005847 4334 - . gene_id "MER41_5q23.1a"; transcript_id "MER41_5q23.1a"; locus "MER41_5q23.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0190"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr5 rmsk exon 117005849 117006003 898 - . gene_id "MER41_5q23.1a"; transcript_id "MER41_5q23.1a"; locus "MER41_5q23.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0190"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "482"; repStart "-1"; ### HERVH_5q23.1a ### chr5 rmsk gene 117046415 117052246 . - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0500"; model_cov "4895"; model_pct "63.5"; chr5 rmsk exon 117046415 117046852 2519 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-21"; repStart "0"; chr5 rmsk exon 117046853 117047230 2373 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 117047231 117047447 1272 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 117047452 117048067 2903 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr5 rmsk exon 117048070 117048563 3277 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr5 rmsk exon 117048563 117048709 791 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 117048704 117051812 14357 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 117051815 117052246 2596 - . gene_id "HERVH_5q23.1a"; transcript_id "HERVH_5q23.1a"; locus "HERVH_5q23.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0500"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_5q23.1a ### chr5 rmsk gene 117100212 117102343 . + . gene_id "ERVLE_5q23.1a"; transcript_id "ERVLE_5q23.1a"; locus "ERVLE_5q23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1470"; model_cov "1908"; model_pct "33.7"; chr5 rmsk exon 117100212 117100603 1688 + . gene_id "ERVLE_5q23.1a"; transcript_id "ERVLE_5q23.1a"; locus "ERVLE_5q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1470"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "-2426"; repStart "2807"; chr5 rmsk exon 117100911 117101882 1688 + . gene_id "ERVLE_5q23.1a"; transcript_id "ERVLE_5q23.1a"; locus "ERVLE_5q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1470"; repClass "LTR"; repEnd "4241"; repFamily "ERVL"; repLeft "-1426"; repStart "3065"; chr5 rmsk exon 117102078 117102343 1456 + . gene_id "ERVLE_5q23.1a"; transcript_id "ERVLE_5q23.1a"; locus "ERVLE_5q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1470"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "-843"; repStart "4526"; ### ERV316A3_5q23.1c ### chr5 rmsk gene 117181390 117185208 . - . gene_id "ERV316A3_5q23.1c"; transcript_id "ERV316A3_5q23.1c"; locus "ERV316A3_5q23.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1103"; model_cov "2841"; model_pct "54.4"; chr5 rmsk exon 117181390 117182427 2193 - . gene_id "ERV316A3_5q23.1c"; transcript_id "ERV316A3_5q23.1c"; locus "ERV316A3_5q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1103"; repClass "LTR"; repEnd "4816"; repFamily "ERVL"; repLeft "3768"; repStart "-410"; chr5 rmsk exon 117182425 117182594 1323 - . gene_id "ERV316A3_5q23.1c"; transcript_id "ERV316A3_5q23.1c"; locus "ERV316A3_5q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1103"; repClass "LTR"; repEnd "2055"; repFamily "ERVL"; repLeft "1918"; repStart "-3171"; chr5 rmsk exon 117182900 117184534 1389 - . gene_id "ERV316A3_5q23.1c"; transcript_id "ERV316A3_5q23.1c"; locus "ERV316A3_5q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1103"; repClass "LTR"; repEnd "1917"; repFamily "ERVL"; repLeft "261"; repStart "-3309"; chr5 rmsk exon 117184771 117185208 696 - . gene_id "ERV316A3_5q23.1c"; transcript_id "ERV316A3_5q23.1c"; locus "ERV316A3_5q23.1c"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1103"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_5q23.1d ### chr5 rmsk gene 117326284 117332767 . + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1104"; model_cov "5078"; model_pct "97.2"; chr5 rmsk exon 117326284 117326575 724 + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1104"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-85"; repStart "78"; chr5 rmsk exon 117326597 117327991 3198 + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1104"; repClass "LTR"; repEnd "1445"; repFamily "ERVL"; repLeft "-3781"; repStart "5"; chr5 rmsk exon 117328086 117330074 8216 + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1104"; repClass "LTR"; repEnd "3614"; repFamily "ERVL"; repLeft "-1612"; repStart "1587"; chr5 rmsk exon 117330585 117332120 8216 + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1104"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3615"; chr5 rmsk exon 117332338 117332767 1265 + . gene_id "ERV316A3_5q23.1d"; transcript_id "ERV316A3_5q23.1d"; locus "ERV316A3_5q23.1d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1104"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "14"; ### ERV316A3_5q23.1e ### chr5 rmsk gene 117569017 117570560 . - . gene_id "ERV316A3_5q23.1e"; transcript_id "ERV316A3_5q23.1e"; locus "ERV316A3_5q23.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1105"; model_cov "1555"; model_pct "29.8"; chr5 rmsk exon 117569017 117570468 2738 - . gene_id "ERV316A3_5q23.1e"; transcript_id "ERV316A3_5q23.1e"; locus "ERV316A3_5q23.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1105"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "3661"; repStart "-122"; chr5 rmsk exon 117570460 117570560 337 - . gene_id "ERV316A3_5q23.1e"; transcript_id "ERV316A3_5q23.1e"; locus "ERV316A3_5q23.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1105"; repClass "LTR"; repEnd "2318"; repFamily "ERVL"; repLeft "2206"; repStart "-2908"; ### ERV316A3_5q23.1f ### chr5 rmsk gene 118305737 118307313 . - . gene_id "ERV316A3_5q23.1f"; transcript_id "ERV316A3_5q23.1f"; locus "ERV316A3_5q23.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1107"; model_cov "1404"; model_pct "26.9"; chr5 rmsk exon 118305737 118305936 369 - . gene_id "ERV316A3_5q23.1f"; transcript_id "ERV316A3_5q23.1f"; locus "ERV316A3_5q23.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1107"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "3999"; repStart "-1028"; chr5 rmsk exon 118305948 118306514 1225 - . gene_id "ERV316A3_5q23.1f"; transcript_id "ERV316A3_5q23.1f"; locus "ERV316A3_5q23.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1107"; repClass "LTR"; repEnd "4109"; repFamily "ERVL"; repLeft "3505"; repStart "-1117"; chr5 rmsk exon 118306660 118306993 640 - . gene_id "ERV316A3_5q23.1f"; transcript_id "ERV316A3_5q23.1f"; locus "ERV316A3_5q23.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1107"; repClass "LTR"; repEnd "3024"; repFamily "ERVL"; repLeft "2676"; repStart "-2202"; chr5 rmsk exon 118307070 118307313 270 - . gene_id "ERV316A3_5q23.1f"; transcript_id "ERV316A3_5q23.1f"; locus "ERV316A3_5q23.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1107"; repClass "LTR"; repEnd "977"; repFamily "ERVL"; repLeft "724"; repStart "-4249"; ### HERVL_5q23.1a ### chr5 rmsk gene 118566981 118570739 . + . gene_id "HERVL_5q23.1a"; transcript_id "HERVL_5q23.1a"; locus "HERVL_5q23.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0549"; model_cov "3179"; model_pct "56.2"; chr5 rmsk exon 118566981 118567041 339 + . gene_id "HERVL_5q23.1a"; transcript_id "HERVL_5q23.1a"; locus "HERVL_5q23.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0549"; repClass "LTR"; repEnd "76"; repFamily "ERVL"; repLeft "-377"; repStart "10"; chr5 rmsk exon 118567042 118570227 23724 + . gene_id "HERVL_5q23.1a"; transcript_id "HERVL_5q23.1a"; locus "HERVL_5q23.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0549"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2475"; chr5 rmsk exon 118570228 118570739 2763 + . gene_id "HERVL_5q23.1a"; transcript_id "HERVL_5q23.1a"; locus "HERVL_5q23.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0549"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_5q23.1b ### chr5 rmsk gene 118831656 118832807 . + . gene_id "ERVLE_5q23.1b"; transcript_id "ERVLE_5q23.1b"; locus "ERVLE_5q23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1472"; model_cov "1175"; model_pct "20.7"; chr5 rmsk exon 118831656 118832807 5961 + . gene_id "ERVLE_5q23.1b"; transcript_id "ERVLE_5q23.1b"; locus "ERVLE_5q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1472"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "-594"; repStart "3898"; ### HERVH_5q23.1b ### chr5 rmsk gene 118948123 118952646 . - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0501"; model_cov "3771"; model_pct "48.9"; chr5 rmsk exon 118948123 118948193 1171 - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0501"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3927"; repStart "-3720"; chr5 rmsk exon 118948504 118948624 1171 - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0501"; repClass "LTR"; repEnd "3926"; repFamily "ERV1"; repLeft "3806"; repStart "-3787"; chr5 rmsk exon 118948619 118949928 17634 - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0501"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "2300"; repStart "-4126"; chr5 rmsk exon 118950241 118952267 17634 - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0501"; repClass "LTR"; repEnd "2299"; repFamily "ERV1"; repLeft "1"; repStart "-5414"; chr5 rmsk exon 118952283 118952646 2212 - . gene_id "HERVH_5q23.1b"; transcript_id "HERVH_5q23.1b"; locus "HERVH_5q23.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0501"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_5q23.1b ### chr5 rmsk gene 118994667 119001695 . - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0191"; model_cov "4382"; model_pct "73.7"; chr5 rmsk exon 118994667 118995105 3233 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0191"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-175"; chr5 rmsk exon 118995106 118996880 17371 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4129"; repStart "0"; chr5 rmsk exon 118997185 118998147 17371 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "3300"; repStart "-1818"; chr5 rmsk exon 118999713 119000000 7159 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "2178"; repFamily "ERV1"; repLeft "2011"; repStart "-3768"; chr5 rmsk exon 119000001 119000405 2577 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "1608"; repFamily "ERV1"; repLeft "1200"; repStart "-4338"; chr5 rmsk exon 119000404 119000520 699 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "2019"; repFamily "ERV1"; repLeft "1901"; repStart "-3927"; chr5 rmsk exon 119000522 119000867 1879 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "1407"; repStart "-4184"; chr5 rmsk exon 119000870 119001548 4514 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0191"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr5 rmsk exon 119001549 119001695 875 - . gene_id "MER41_5q23.1b"; transcript_id "MER41_5q23.1b"; locus "MER41_5q23.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0191"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "482"; repStart "0"; ### HERVIP10FH_5q23.1a ### chr5 rmsk gene 119435608 119439169 . + . gene_id "HERVIP10FH_5q23.1a"; transcript_id "HERVIP10FH_5q23.1a"; locus "HERVIP10FH_5q23.1a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0056"; model_cov "1935"; model_pct "37.9"; chr5 rmsk exon 119435608 119435884 1644 + . gene_id "HERVIP10FH_5q23.1a"; transcript_id "HERVIP10FH_5q23.1a"; locus "HERVIP10FH_5q23.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0056"; repClass "LTR"; repEnd "-2383"; repFamily "ERV1"; repLeft "-7485"; repStart "-2646"; chr5 rmsk exon 119435958 119436117 515 + . gene_id "HERVIP10FH_5q23.1a"; transcript_id "HERVIP10FH_5q23.1a"; locus "HERVIP10FH_5q23.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0056"; repClass "LTR"; repEnd "-2000"; repFamily "ERV1"; repLeft "-7102"; repStart "-2164"; chr5 rmsk exon 119437486 119439169 7985 + . gene_id "HERVIP10FH_5q23.1a"; transcript_id "HERVIP10FH_5q23.1a"; locus "HERVIP10FH_5q23.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0056"; repClass "LTR"; repEnd "1987"; repFamily "ERV1"; repLeft "-3115"; repStart "479"; ### HERVIP10FH_5q23.1b ### chr5 rmsk gene 119446130 119447266 . + . gene_id "HERVIP10FH_5q23.1b"; transcript_id "HERVIP10FH_5q23.1b"; locus "HERVIP10FH_5q23.1b"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0057"; model_cov "1144"; model_pct "22.4"; chr5 rmsk exon 119446130 119447266 8216 + . gene_id "HERVIP10FH_5q23.1b"; transcript_id "HERVIP10FH_5q23.1b"; locus "HERVIP10FH_5q23.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0057"; repClass "LTR"; repEnd "3119"; repFamily "ERV1"; repLeft "-1983"; repStart "1975"; ### HERVIP10F_5q23.1 ### chr5 rmsk gene 119447316 119449308 . + . gene_id "HERVIP10F_5q23.1"; transcript_id "HERVIP10F_5q23.1"; locus "HERVIP10F_5q23.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0042"; model_cov "1517"; model_pct "19.6"; chr5 rmsk exon 119447316 119448828 9651 + . gene_id "HERVIP10F_5q23.1"; transcript_id "HERVIP10F_5q23.1"; locus "HERVIP10F_5q23.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0042"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "-3"; repStart "6217"; chr5 rmsk exon 119448831 119449308 3176 + . gene_id "HERVIP10F_5q23.1"; transcript_id "HERVIP10F_5q23.1"; locus "HERVIP10F_5q23.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0042"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q23.1c ### chr5 rmsk gene 119938843 119940007 . - . gene_id "ERVLE_5q23.1c"; transcript_id "ERVLE_5q23.1c"; locus "ERVLE_5q23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1474"; model_cov "1135"; model_pct "20.0"; chr5 rmsk exon 119938843 119939762 2037 - . gene_id "ERVLE_5q23.1c"; transcript_id "ERVLE_5q23.1c"; locus "ERVLE_5q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1474"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "2185"; repStart "-2545"; chr5 rmsk exon 119939808 119940007 443 - . gene_id "ERVLE_5q23.1c"; transcript_id "ERVLE_5q23.1c"; locus "ERVLE_5q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1474"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "2604"; repStart "-2865"; ### ERV316A3_5q23.1g ### chr5 rmsk gene 119995361 119997408 . - . gene_id "ERV316A3_5q23.1g"; transcript_id "ERV316A3_5q23.1g"; locus "ERV316A3_5q23.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1108"; model_cov "1323"; model_pct "25.3"; chr5 rmsk exon 119995361 119995682 1318 - . gene_id "ERV316A3_5q23.1g"; transcript_id "ERV316A3_5q23.1g"; locus "ERV316A3_5q23.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1108"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "1127"; repStart "-3794"; chr5 rmsk exon 119995967 119996533 1318 - . gene_id "ERV316A3_5q23.1g"; transcript_id "ERV316A3_5q23.1g"; locus "ERV316A3_5q23.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1108"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "530"; repStart "-4100"; chr5 rmsk exon 119996563 119996988 779 - . gene_id "ERV316A3_5q23.1g"; transcript_id "ERV316A3_5q23.1g"; locus "ERV316A3_5q23.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1108"; repClass "LTR"; repEnd "726"; repFamily "ERVL"; repLeft "304"; repStart "-4500"; chr5 rmsk exon 119997051 119997408 830 - . gene_id "ERV316A3_5q23.1g"; transcript_id "ERV316A3_5q23.1g"; locus "ERV316A3_5q23.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1108"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "45"; repStart "0"; ### HERVL_5q23.1b ### chr5 rmsk gene 120209518 120216569 . - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0550"; model_cov "5476"; model_pct "96.9"; chr5 rmsk exon 120209518 120210052 1912 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-81"; repStart "0"; chr5 rmsk exon 120210072 120210550 38196 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "5480"; repFamily "ERVL"; repLeft "4992"; repStart "-174"; chr5 rmsk exon 120210841 120213527 38196 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "4991"; repFamily "ERVL"; repLeft "2275"; repStart "-663"; chr5 rmsk exon 120213566 120215396 38196 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "430"; repStart "-3380"; chr5 rmsk exon 120215587 120215999 38196 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "1"; repStart "-5225"; chr5 rmsk exon 120216000 120216569 2120 - . gene_id "HERVL_5q23.1b"; transcript_id "HERVL_5q23.1b"; locus "HERVL_5q23.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0550"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERV316A3_5q23.1h ### chr5 rmsk gene 120449148 120450529 . + . gene_id "ERV316A3_5q23.1h"; transcript_id "ERV316A3_5q23.1h"; locus "ERV316A3_5q23.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1109"; model_cov "738"; model_pct "14.1"; chr5 rmsk exon 120449148 120449842 542 + . gene_id "ERV316A3_5q23.1h"; transcript_id "ERV316A3_5q23.1h"; locus "ERV316A3_5q23.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1109"; repClass "LTR"; repEnd "1466"; repFamily "ERVL"; repLeft "-3760"; repStart "728"; chr5 rmsk exon 120450392 120450529 475 + . gene_id "ERV316A3_5q23.1h"; transcript_id "ERV316A3_5q23.1h"; locus "ERV316A3_5q23.1h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1109"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "304"; ### HERVH_5q23.1c ### chr5 rmsk gene 120697546 120703411 . - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0502"; model_cov "5060"; model_pct "65.6"; chr5 rmsk exon 120697546 120698035 3271 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 120698036 120698411 2371 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr5 rmsk exon 120698414 120698620 1235 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr5 rmsk exon 120698618 120699280 4293 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 120699283 120699783 3236 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 120699774 120702958 20375 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr5 rmsk exon 120702961 120703411 3394 - . gene_id "HERVH_5q23.1c"; transcript_id "HERVH_5q23.1c"; locus "HERVH_5q23.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0502"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER101_5q23.1 ### chr5 rmsk gene 120946720 120948515 . - . gene_id "MER101_5q23.1"; transcript_id "MER101_5q23.1"; locus "MER101_5q23.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0158"; model_cov "1737"; model_pct "26.2"; chr5 rmsk exon 120946720 120947014 1363 - . gene_id "MER101_5q23.1"; transcript_id "MER101_5q23.1"; locus "MER101_5q23.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0158"; repClass "LTR"; repEnd "411"; repFamily "ERV1"; repLeft "98"; repStart "-34"; chr5 rmsk exon 120947120 120947695 2003 - . gene_id "MER101_5q23.1"; transcript_id "MER101_5q23.1"; locus "MER101_5q23.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0158"; repClass "LTR"; repEnd "6623"; repFamily "ERV1"; repLeft "6005"; repStart "-16"; chr5 rmsk exon 120947697 120947804 540 - . gene_id "MER101_5q23.1"; transcript_id "MER101_5q23.1"; locus "MER101_5q23.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0158"; repClass "LTR"; repEnd "5899"; repFamily "ERV1"; repLeft "5790"; repStart "-740"; chr5 rmsk exon 120947905 120948515 2258 - . gene_id "MER101_5q23.1"; transcript_id "MER101_5q23.1"; locus "MER101_5q23.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0158"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "3606"; repStart "-2023"; ### HERVL40_5q23.1 ### chr5 rmsk gene 121413941 121416582 . - . gene_id "HERVL40_5q23.1"; transcript_id "HERVL40_5q23.1"; locus "HERVL40_5q23.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0166"; model_cov "1886"; model_pct "34.1"; chr5 rmsk exon 121413941 121415253 4280 - . gene_id "HERVL40_5q23.1"; transcript_id "HERVL40_5q23.1"; locus "HERVL40_5q23.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0166"; repClass "LTR"; repEnd "3372"; repFamily "ERVL"; repLeft "2050"; repStart "-2158"; chr5 rmsk exon 121415240 121415626 884 - . gene_id "HERVL40_5q23.1"; transcript_id "HERVL40_5q23.1"; locus "HERVL40_5q23.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0166"; repClass "LTR"; repEnd "1634"; repFamily "ERVL"; repLeft "1246"; repStart "-3896"; chr5 rmsk exon 121415666 121415828 437 - . gene_id "HERVL40_5q23.1"; transcript_id "HERVL40_5q23.1"; locus "HERVL40_5q23.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0166"; repClass "LTR"; repEnd "1100"; repFamily "ERVL"; repLeft "924"; repStart "-4430"; chr5 rmsk exon 121416115 121416582 1416 - . gene_id "HERVL40_5q23.1"; transcript_id "HERVL40_5q23.1"; locus "HERVL40_5q23.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0166"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### HERVL_5q23.1c ### chr5 rmsk gene 121542884 121544611 . + . gene_id "HERVL_5q23.1c"; transcript_id "HERVL_5q23.1c"; locus "HERVL_5q23.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0552"; model_cov "1122"; model_pct "19.8"; chr5 rmsk exon 121542884 121543327 2904 + . gene_id "HERVL_5q23.1c"; transcript_id "HERVL_5q23.1c"; locus "HERVL_5q23.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0552"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 121543328 121544429 8229 + . gene_id "HERVL_5q23.1c"; transcript_id "HERVL_5q23.1c"; locus "HERVL_5q23.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0552"; repClass "LTR"; repEnd "1123"; repFamily "ERVL"; repLeft "-4531"; repStart "1"; chr5 rmsk exon 121544439 121544611 1335 + . gene_id "HERVL_5q23.1c"; transcript_id "HERVL_5q23.1c"; locus "HERVL_5q23.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0552"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "281"; ### ERV316A3_5q23.1i ### chr5 rmsk gene 121792454 121793187 . + . gene_id "ERV316A3_5q23.1i"; transcript_id "ERV316A3_5q23.1i"; locus "ERV316A3_5q23.1i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1110"; model_cov "747"; model_pct "14.3"; chr5 rmsk exon 121792454 121793187 1633 + . gene_id "ERV316A3_5q23.1i"; transcript_id "ERV316A3_5q23.1i"; locus "ERV316A3_5q23.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1110"; repClass "LTR"; repEnd "3626"; repFamily "ERVL"; repLeft "-1600"; repStart "2879"; ### HML3_5q23.1 ### chr5 rmsk gene 121856818 121860940 . - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0098"; model_cov "3665"; model_pct "60.9"; chr5 rmsk exon 121856818 121857512 5525 - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0098"; repClass "LTR"; repEnd "5506"; repFamily "ERVK"; repLeft "4794"; repStart "-515"; chr5 rmsk exon 121857510 121858333 6762 - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0098"; repClass "LTR"; repEnd "4547"; repFamily "ERVK"; repLeft "3724"; repStart "-1474"; chr5 rmsk exon 121858335 121859862 12509 - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0098"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1271"; repStart "-3223"; chr5 rmsk exon 121859855 121860449 4413 - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0098"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr5 rmsk exon 121860450 121860940 3710 - . gene_id "HML3_5q23.1"; transcript_id "HML3_5q23.1"; locus "HML3_5q23.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0098"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_5q23.2a ### chr5 rmsk gene 122474226 122478846 . - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0503"; model_cov "4302"; model_pct "55.8"; chr5 rmsk exon 122474226 122474640 3081 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr5 rmsk exon 122474641 122475017 2169 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 122475018 122475205 1049 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5614"; repStart "-1894"; chr5 rmsk exon 122475241 122475648 2354 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4743"; repStart "-2564"; chr5 rmsk exon 122475651 122475804 889 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "3492"; repStart "-4069"; chr5 rmsk exon 122475795 122475946 811 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3134"; repStart "-4423"; chr5 rmsk exon 122475918 122478731 15180 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr5 rmsk exon 122478732 122478846 862 - . gene_id "HERVH_5q23.2a"; transcript_id "HERVH_5q23.2a"; locus "HERVH_5q23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0503"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "336"; repStart "0"; ### HERVH_5q23.2b ### chr5 rmsk gene 122616893 122624374 . - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0504"; model_cov "6870"; model_pct "89.1"; chr5 rmsk exon 122616893 122617341 3255 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 122617342 122620575 22857 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4488"; repStart "0"; chr5 rmsk exon 122620578 122621064 2966 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 122621055 122621204 873 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 122621184 122623920 14015 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr5 rmsk exon 122623928 122624374 3273 - . gene_id "HERVH_5q23.2b"; transcript_id "HERVH_5q23.2b"; locus "HERVH_5q23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0504"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### ERV316A3_5q23.2a ### chr5 rmsk gene 122652871 122653322 . - . gene_id "ERV316A3_5q23.2a"; transcript_id "ERV316A3_5q23.2a"; locus "ERV316A3_5q23.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1111"; model_cov "626"; model_pct "12.0"; chr5 rmsk exon 122652871 122653322 802 - . gene_id "ERV316A3_5q23.2a"; transcript_id "ERV316A3_5q23.2a"; locus "ERV316A3_5q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1111"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "3664"; repStart "-936"; ### ERVLB4_5q23.2a ### chr5 rmsk gene 122865124 122868901 . - . gene_id "ERVLB4_5q23.2a"; transcript_id "ERVLB4_5q23.2a"; locus "ERVLB4_5q23.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0658"; model_cov "2674"; model_pct "46.8"; chr5 rmsk exon 122865124 122865215 469 - . gene_id "ERVLB4_5q23.2a"; transcript_id "ERVLB4_5q23.2a"; locus "ERVLB4_5q23.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0658"; repClass "LTR"; repEnd "251"; repFamily "ERVL"; repLeft "164"; repStart "-305"; chr5 rmsk exon 122865790 122866173 16056 - . gene_id "ERVLB4_5q23.2a"; transcript_id "ERVLB4_5q23.2a"; locus "ERVLB4_5q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0658"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "5284"; repStart "-50"; chr5 rmsk exon 122866449 122868727 16056 - . gene_id "ERVLB4_5q23.2a"; transcript_id "ERVLB4_5q23.2a"; locus "ERVLB4_5q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0658"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "2989"; repStart "-431"; chr5 rmsk exon 122868728 122868901 784 - . gene_id "ERVLB4_5q23.2a"; transcript_id "ERVLB4_5q23.2a"; locus "ERVLB4_5q23.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0658"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "5"; repStart "-372"; ### HERVL_5q23.2a ### chr5 rmsk gene 122970923 122975074 . - . gene_id "HERVL_5q23.2a"; transcript_id "HERVL_5q23.2a"; locus "HERVL_5q23.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0553"; model_cov "3695"; model_pct "65.4"; chr5 rmsk exon 122970923 122971454 2066 - . gene_id "HERVL_5q23.2a"; transcript_id "HERVL_5q23.2a"; locus "HERVL_5q23.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0553"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-100"; repStart "-7"; chr5 rmsk exon 122971455 122975074 26971 - . gene_id "HERVL_5q23.2a"; transcript_id "HERVL_5q23.2a"; locus "HERVL_5q23.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0553"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1959"; repStart "0"; ### ERVLE_5q23.2a ### chr5 rmsk gene 123477474 123481437 . - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1478"; model_cov "2596"; model_pct "45.8"; chr5 rmsk exon 123477474 123477713 1518 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4661"; repStart "-746"; chr5 rmsk exon 123478077 123478645 1518 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4023"; repStart "-1007"; chr5 rmsk exon 123478686 123479157 1183 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "2788"; repStart "-2396"; chr5 rmsk exon 123479361 123479704 653 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "2481"; repFamily "ERVL"; repLeft "2133"; repStart "-3186"; chr5 rmsk exon 123479809 123480253 1144 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "2133"; repFamily "ERVL"; repLeft "1673"; repStart "-3534"; chr5 rmsk exon 123480315 123480472 271 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "842"; repFamily "ERVL"; repLeft "657"; repStart "-4825"; chr5 rmsk exon 123481220 123481437 337 - . gene_id "ERVLE_5q23.2a"; transcript_id "ERVLE_5q23.2a"; locus "ERVLE_5q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1478"; repClass "LTR"; repEnd "244"; repFamily "ERVL"; repLeft "21"; repStart "-5423"; ### HUERSP3B_5q23.2a ### chr5 rmsk gene 123926169 123930099 . - . gene_id "HUERSP3B_5q23.2a"; transcript_id "HUERSP3B_5q23.2a"; locus "HUERSP3B_5q23.2a"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0056"; model_cov "3468"; model_pct "46.8"; chr5 rmsk exon 123926169 123928087 19706 - . gene_id "HUERSP3B_5q23.2a"; transcript_id "HUERSP3B_5q23.2a"; locus "HUERSP3B_5q23.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0056"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "4083"; repStart "-1372"; chr5 rmsk exon 123928127 123929165 19706 - . gene_id "HUERSP3B_5q23.2a"; transcript_id "HUERSP3B_5q23.2a"; locus "HUERSP3B_5q23.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0056"; repClass "LTR"; repEnd "4082"; repFamily "ERV1"; repLeft "3073"; repStart "-3336"; chr5 rmsk exon 123929602 123930099 3725 - . gene_id "HUERSP3B_5q23.2a"; transcript_id "HUERSP3B_5q23.2a"; locus "HUERSP3B_5q23.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0056"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "2146"; repStart "-4776"; ### HUERSP3B_5q23.2b ### chr5 rmsk gene 123935870 123938703 . - . gene_id "HUERSP3B_5q23.2b"; transcript_id "HUERSP3B_5q23.2b"; locus "HUERSP3B_5q23.2b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0057"; model_cov "2229"; model_pct "30.0"; chr5 rmsk exon 123935870 123936382 10911 - . gene_id "HUERSP3B_5q23.2b"; transcript_id "HUERSP3B_5q23.2b"; locus "HUERSP3B_5q23.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0057"; repClass "LTR"; repEnd "2097"; repFamily "ERV1"; repLeft "1631"; repStart "-5321"; chr5 rmsk exon 123936409 123938127 10911 - . gene_id "HUERSP3B_5q23.2b"; transcript_id "HUERSP3B_5q23.2b"; locus "HUERSP3B_5q23.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0057"; repClass "LTR"; repEnd "266"; repFamily "ERV1"; repLeft "-1497"; repStart "-7152"; chr5 rmsk exon 123938131 123938703 3753 - . gene_id "HUERSP3B_5q23.2b"; transcript_id "HUERSP3B_5q23.2b"; locus "HUERSP3B_5q23.2b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0057"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_5q23.2b ### chr5 rmsk gene 124063528 124069473 . - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0659"; model_cov "5440"; model_pct "95.2"; chr5 rmsk exon 124063528 124063585 301 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "343"; repStart "0"; chr5 rmsk exon 124063651 124063997 1836 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-158"; repStart "-43"; chr5 rmsk exon 124063998 124064370 10680 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5364"; repStart "-1"; chr5 rmsk exon 124064662 124069038 14703 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "516"; repStart "-351"; chr5 rmsk exon 124069036 124069299 1296 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "245"; repFamily "ERVL"; repLeft "1"; repStart "-5469"; chr5 rmsk exon 124069300 124069370 239 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "331"; repStart "0"; chr5 rmsk exon 124069359 124069473 489 - . gene_id "ERVLB4_5q23.2b"; transcript_id "ERVLB4_5q23.2b"; locus "ERVLB4_5q23.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0659"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "1"; repStart "-282"; ### HERVH_5q23.2c ### chr5 rmsk gene 124303758 124309476 . + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0505"; model_cov "4861"; model_pct "63.0"; chr5 rmsk exon 124303758 124304213 2985 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr5 rmsk exon 124304232 124307204 17833 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "60"; chr5 rmsk exon 124307176 124307333 890 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3134"; chr5 rmsk exon 124307324 124307828 3346 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 124307831 124308482 3891 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 124308484 124308686 1194 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 124308687 124309062 2121 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 124309063 124309476 2788 + . gene_id "HERVH_5q23.2c"; transcript_id "HERVH_5q23.2c"; locus "HERVH_5q23.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0505"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_5q23.2d ### chr5 rmsk gene 124497035 124502739 . + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0506"; model_cov "4917"; model_pct "63.7"; chr5 rmsk exon 124497035 124497443 2695 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 124497446 124499999 16652 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "2537"; repFamily "ERV1"; repLeft "-5176"; repStart "1"; chr5 rmsk exon 124500001 124500451 3059 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "2539"; chr5 rmsk exon 124500446 124500593 897 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 124500584 124501085 3556 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr5 rmsk exon 124501089 124501751 4456 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 124501732 124501955 1248 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr5 rmsk exon 124501954 124502332 2517 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 124502333 124502739 2908 + . gene_id "HERVH_5q23.2d"; transcript_id "HERVH_5q23.2d"; locus "HERVH_5q23.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0506"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5q23.2b ### chr5 rmsk gene 124927966 124933483 . - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1113"; model_cov "3030"; model_pct "58.0"; chr5 rmsk exon 124927966 124928355 1033 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr5 rmsk exon 124928721 124929730 3863 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4163"; repStart "0"; chr5 rmsk exon 124930360 124930535 3863 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "3846"; repFamily "ERVL"; repLeft "3652"; repStart "-1380"; chr5 rmsk exon 124930568 124931221 1167 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "3103"; repFamily "ERVL"; repLeft "2392"; repStart "-2123"; chr5 rmsk exon 124931233 124931442 2464 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "2977"; repFamily "ERVL"; repLeft "2777"; repStart "-2249"; chr5 rmsk exon 124931762 124932004 2464 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "2533"; repStart "-2450"; chr5 rmsk exon 124932303 124932580 2464 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "2532"; repFamily "ERVL"; repLeft "2271"; repStart "-2694"; chr5 rmsk exon 124932878 124933230 2464 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "2270"; repFamily "ERVL"; repLeft "1912"; repStart "-2956"; chr5 rmsk exon 124933246 124933483 865 - . gene_id "ERV316A3_5q23.2b"; transcript_id "ERV316A3_5q23.2b"; locus "ERV316A3_5q23.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1113"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "1"; repStart "-184"; ### MER61_5q23.2a ### chr5 rmsk gene 124962835 124967101 . + . gene_id "MER61_5q23.2a"; transcript_id "MER61_5q23.2a"; locus "MER61_5q23.2a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0163"; model_cov "4574"; model_pct "87.7"; chr5 rmsk exon 124962835 124963171 1879 + . gene_id "MER61_5q23.2a"; transcript_id "MER61_5q23.2a"; locus "MER61_5q23.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0163"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 124963172 124963803 2004 + . gene_id "MER61_5q23.2a"; transcript_id "MER61_5q23.2a"; locus "MER61_5q23.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0163"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr5 rmsk exon 124963880 124966685 15530 + . gene_id "MER61_5q23.2a"; transcript_id "MER61_5q23.2a"; locus "MER61_5q23.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0163"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "-1133"; repStart "228"; chr5 rmsk exon 124967090 124967101 15530 + . gene_id "MER61_5q23.2a"; transcript_id "MER61_5q23.2a"; locus "MER61_5q23.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0163"; repClass "LTR"; repEnd "4364"; repFamily "ERV1"; repLeft "-853"; repStart "4352"; ### HERVH_5q23.2e ### chr5 rmsk gene 124966686 124972226 . - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0507"; model_cov "4868"; model_pct "63.1"; chr5 rmsk exon 124966686 124967089 2587 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 124967102 124967528 2519 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr5 rmsk exon 124967515 124968567 7140 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "3993"; repStart "-2699"; chr5 rmsk exon 124968563 124968807 1578 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "3492"; repStart "-3978"; chr5 rmsk exon 124968786 124968946 889 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "3308"; repFamily "ERV1"; repLeft "3140"; repStart "-4405"; chr5 rmsk exon 124968926 124971456 14848 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "255"; repStart "-4718"; chr5 rmsk exon 124971572 124971824 1749 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "253"; repFamily "ERV1"; repLeft "1"; repStart "-7460"; chr5 rmsk exon 124971828 124972226 2769 - . gene_id "HERVH_5q23.2e"; transcript_id "HERVH_5q23.2e"; locus "HERVH_5q23.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0507"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_5q23.2b ### chr5 rmsk gene 124972227 124973331 . + . gene_id "MER61_5q23.2b"; transcript_id "MER61_5q23.2b"; locus "MER61_5q23.2b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0164"; model_cov "872"; model_pct "16.7"; chr5 rmsk exon 124972227 124972998 2261 + . gene_id "MER61_5q23.2b"; transcript_id "MER61_5q23.2b"; locus "MER61_5q23.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0164"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4345"; chr5 rmsk exon 124972999 124973331 1833 + . gene_id "MER61_5q23.2b"; transcript_id "MER61_5q23.2b"; locus "MER61_5q23.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0164"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q23.2b ### chr5 rmsk gene 125587739 125591204 . - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1479"; model_cov "2128"; model_pct "37.6"; chr5 rmsk exon 125587739 125587936 528 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "5306"; repFamily "ERVL"; repLeft "5112"; repStart "-361"; chr5 rmsk exon 125588029 125588350 799 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "4964"; repFamily "ERVL"; repLeft "4629"; repStart "-703"; chr5 rmsk exon 125588514 125588996 536 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "4363"; repFamily "ERVL"; repLeft "3845"; repStart "-1304"; chr5 rmsk exon 125589092 125589264 623 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "3758"; repFamily "ERVL"; repLeft "3580"; repStart "-1909"; chr5 rmsk exon 125589626 125589764 623 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "3432"; repStart "-2088"; chr5 rmsk exon 125589842 125590174 623 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "3431"; repFamily "ERVL"; repLeft "3085"; repStart "-2236"; chr5 rmsk exon 125590255 125590421 320 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "3269"; repFamily "ERVL"; repLeft "3107"; repStart "-2398"; chr5 rmsk exon 125590976 125591204 324 - . gene_id "ERVLE_5q23.2b"; transcript_id "ERVLE_5q23.2b"; locus "ERVLE_5q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1479"; repClass "LTR"; repEnd "950"; repFamily "ERVL"; repLeft "702"; repStart "-4717"; ### ERV316A3_5q23.2c ### chr5 rmsk gene 125597434 125598169 . - . gene_id "ERV316A3_5q23.2c"; transcript_id "ERV316A3_5q23.2c"; locus "ERV316A3_5q23.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1116"; model_cov "731"; model_pct "14.0"; chr5 rmsk exon 125597434 125598169 1708 - . gene_id "ERV316A3_5q23.2c"; transcript_id "ERV316A3_5q23.2c"; locus "ERV316A3_5q23.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1116"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "2165"; repStart "-2330"; ### HERVFH19_5q23.2 ### chr5 rmsk gene 125663209 125667746 . - . gene_id "HERVFH19_5q23.2"; transcript_id "HERVFH19_5q23.2"; locus "HERVFH19_5q23.2"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0016"; model_cov "4162"; model_pct "53.9"; chr5 rmsk exon 125663209 125664928 12143 - . gene_id "HERVFH19_5q23.2"; transcript_id "HERVFH19_5q23.2"; locus "HERVFH19_5q23.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0016"; repClass "LTR"; repEnd "4324"; repFamily "ERV1"; repLeft "2617"; repStart "-3395"; chr5 rmsk exon 125664930 125667298 16299 - . gene_id "HERVFH19_5q23.2"; transcript_id "HERVFH19_5q23.2"; locus "HERVFH19_5q23.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0016"; repClass "LTR"; repEnd "2456"; repFamily "ERV1"; repLeft "1"; repStart "-5263"; chr5 rmsk exon 125667299 125667746 2622 - . gene_id "HERVFH19_5q23.2"; transcript_id "HERVFH19_5q23.2"; locus "HERVFH19_5q23.2"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0016"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_5q23.2c ### chr5 rmsk gene 125674136 125680595 . + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0660"; model_cov "3070"; model_pct "53.7"; chr5 rmsk exon 125674136 125674511 273 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "1244"; repFamily "ERVL"; repLeft "-4470"; repStart "847"; chr5 rmsk exon 125674892 125675835 739 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "1956"; repFamily "ERVL"; repLeft "-3758"; repStart "941"; chr5 rmsk exon 125676996 125677055 298 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "2097"; repFamily "ERVL"; repLeft "-3617"; repStart "2038"; chr5 rmsk exon 125677782 125678429 940 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "-2385"; repStart "2669"; chr5 rmsk exon 125679068 125679187 304 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "3886"; repFamily "ERVL"; repLeft "-1828"; repStart "3770"; chr5 rmsk exon 125679176 125679432 467 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "3910"; repFamily "ERVL"; repLeft "-1804"; repStart "3527"; chr5 rmsk exon 125679794 125680094 622 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "-1320"; repStart "3980"; chr5 rmsk exon 125680566 125680595 519 + . gene_id "ERVLB4_5q23.2c"; transcript_id "ERVLB4_5q23.2c"; locus "ERVLB4_5q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0660"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "-953"; repStart "4735"; ### HERVP71A_5q23.2a ### chr5 rmsk gene 125914556 125918390 . + . gene_id "HERVP71A_5q23.2a"; transcript_id "HERVP71A_5q23.2a"; locus "HERVP71A_5q23.2a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0026"; model_cov "3427"; model_pct "45.2"; chr5 rmsk exon 125914556 125915010 3245 + . gene_id "HERVP71A_5q23.2a"; transcript_id "HERVP71A_5q23.2a"; locus "HERVP71A_5q23.2a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0026"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 125915011 125918390 14748 + . gene_id "HERVP71A_5q23.2a"; transcript_id "HERVP71A_5q23.2a"; locus "HERVP71A_5q23.2a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0026"; repClass "LTR"; repEnd "3428"; repFamily "ERV1"; repLeft "-4162"; repStart "1"; ### HERVP71A_5q23.2b ### chr5 rmsk gene 125924565 125929175 . + . gene_id "HERVP71A_5q23.2b"; transcript_id "HERVP71A_5q23.2b"; locus "HERVP71A_5q23.2b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0027"; model_cov "4177"; model_pct "55.0"; chr5 rmsk exon 125924565 125928717 29668 + . gene_id "HERVP71A_5q23.2b"; transcript_id "HERVP71A_5q23.2b"; locus "HERVP71A_5q23.2b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0027"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "3413"; chr5 rmsk exon 125928719 125929175 3173 + . gene_id "HERVP71A_5q23.2b"; transcript_id "HERVP71A_5q23.2b"; locus "HERVP71A_5q23.2b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0027"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_5q23.2d ### chr5 rmsk gene 125959336 125961742 . + . gene_id "ERV316A3_5q23.2d"; transcript_id "ERV316A3_5q23.2d"; locus "ERV316A3_5q23.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1117"; model_cov "658"; model_pct "12.6"; chr5 rmsk exon 125959336 125959714 311 + . gene_id "ERV316A3_5q23.2d"; transcript_id "ERV316A3_5q23.2d"; locus "ERV316A3_5q23.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1117"; repClass "LTR"; repEnd "1645"; repFamily "ERVL"; repLeft "-3581"; repStart "1252"; chr5 rmsk exon 125961137 125961403 611 + . gene_id "ERV316A3_5q23.2d"; transcript_id "ERV316A3_5q23.2d"; locus "ERV316A3_5q23.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1117"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "4877"; chr5 rmsk exon 125961471 125961742 492 + . gene_id "ERV316A3_5q23.2d"; transcript_id "ERV316A3_5q23.2d"; locus "ERV316A3_5q23.2d"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1117"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-243"; repStart "7"; ### ERVLE_5q23.2c ### chr5 rmsk gene 126104338 126107673 . + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1482"; model_cov "1690"; model_pct "29.8"; chr5 rmsk exon 126104338 126104402 250 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "-3201"; repStart "2402"; chr5 rmsk exon 126104447 126104681 357 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "2830"; repFamily "ERVL"; repLeft "-2837"; repStart "2588"; chr5 rmsk exon 126104728 126105488 1280 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "3717"; repFamily "ERVL"; repLeft "-1950"; repStart "2857"; chr5 rmsk exon 126106285 126106489 302 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "4240"; repFamily "ERVL"; repLeft "-1427"; repStart "3919"; chr5 rmsk exon 126106695 126106800 342 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "4672"; repFamily "ERVL"; repLeft "-995"; repStart "4564"; chr5 rmsk exon 126107583 126107673 318 + . gene_id "ERVLE_5q23.2c"; transcript_id "ERVLE_5q23.2c"; locus "ERVLE_5q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1482"; repClass "LTR"; repEnd "4807"; repFamily "ERVL"; repLeft "-860"; repStart "4712"; ### HERV9_5q23.2 ### chr5 rmsk gene 126220748 126230219 . + . gene_id "HERV9_5q23.2"; transcript_id "HERV9_5q23.2"; locus "HERV9_5q23.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0059"; model_cov "7258"; model_pct "86.0"; chr5 rmsk exon 126220748 126221870 6017 + . gene_id "HERV9_5q23.2"; transcript_id "HERV9_5q23.2"; locus "HERV9_5q23.2"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0059"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "-104"; repStart "1"; chr5 rmsk exon 126221871 126223660 8886 + . gene_id "HERV9_5q23.2"; transcript_id "HERV9_5q23.2"; locus "HERV9_5q23.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0059"; repClass "LTR"; repEnd "4283"; repFamily "ERV1"; repLeft "-4153"; repStart "2411"; chr5 rmsk exon 126223661 126228929 26150 + . gene_id "HERV9_5q23.2"; transcript_id "HERV9_5q23.2"; locus "HERV9_5q23.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0059"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "3050"; chr5 rmsk exon 126228930 126230219 7931 + . gene_id "HERV9_5q23.2"; transcript_id "HERV9_5q23.2"; locus "HERV9_5q23.2"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0059"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_5q23.2d ### chr5 rmsk gene 126500832 126502841 . - . gene_id "ERVLB4_5q23.2d"; transcript_id "ERVLB4_5q23.2d"; locus "ERVLB4_5q23.2d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0662"; model_cov "1186"; model_pct "20.8"; chr5 rmsk exon 126500832 126501155 688 - . gene_id "ERVLB4_5q23.2d"; transcript_id "ERVLB4_5q23.2d"; locus "ERVLB4_5q23.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0662"; repClass "LTR"; repEnd "5462"; repFamily "ERVL"; repLeft "5093"; repStart "-252"; chr5 rmsk exon 126501229 126501417 2148 - . gene_id "ERVLB4_5q23.2d"; transcript_id "ERVLB4_5q23.2d"; locus "ERVLB4_5q23.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0662"; repClass "LTR"; repEnd "4967"; repFamily "ERVL"; repLeft "4781"; repStart "-747"; chr5 rmsk exon 126502259 126502841 2148 - . gene_id "ERVLB4_5q23.2d"; transcript_id "ERVLB4_5q23.2d"; locus "ERVLB4_5q23.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0662"; repClass "LTR"; repEnd "4780"; repFamily "ERVL"; repLeft "4149"; repStart "-934"; ### HERVH_5q23.2f ### chr5 rmsk gene 126667096 126675066 . - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0509"; model_cov "5749"; model_pct "74.5"; chr5 rmsk exon 126667096 126667383 1800 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "141"; repStart "-38"; chr5 rmsk exon 126667409 126667534 771 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "280"; repFamily "ERV1"; repLeft "163"; repStart "-184"; chr5 rmsk exon 126667544 126667814 1476 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "280"; repFamily "ERV1"; repLeft "2"; repStart "-184"; chr5 rmsk exon 126667837 126668398 3243 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr5 rmsk exon 126668392 126670390 12725 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "4008"; repStart "-1697"; chr5 rmsk exon 126671344 126672076 4228 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "5456"; repFamily "ERV1"; repLeft "4416"; repStart "-2257"; chr5 rmsk exon 126672077 126672622 10906 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "2300"; repStart "-4883"; chr5 rmsk exon 126672928 126673077 10906 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "2299"; repFamily "ERV1"; repLeft "2158"; repStart "-5414"; chr5 rmsk exon 126673481 126674805 10906 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "2157"; repFamily "ERV1"; repLeft "848"; repStart "-5556"; chr5 rmsk exon 126674800 126674960 799 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "166"; repFamily "ERV1"; repLeft "1"; repStart "-7547"; chr5 rmsk exon 126674961 126675066 761 - . gene_id "HERVH_5q23.2f"; transcript_id "HERVH_5q23.2f"; locus "HERVH_5q23.2f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0509"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "346"; repStart "0"; ### ERV316A3_5q23.2e ### chr5 rmsk gene 126676843 126680468 . + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1118"; model_cov "1994"; model_pct "38.2"; chr5 rmsk exon 126676843 126677576 3771 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "2875"; repFamily "ERVL"; repLeft "-2351"; repStart "2146"; chr5 rmsk exon 126677887 126678136 3771 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "3113"; repFamily "ERVL"; repLeft "-2113"; repStart "2876"; chr5 rmsk exon 126678447 126678473 3771 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "3114"; chr5 rmsk exon 126678772 126679348 3771 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "-1512"; repStart "3137"; chr5 rmsk exon 126679649 126680044 3771 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "-1082"; repStart "3715"; chr5 rmsk exon 126680236 126680468 551 + . gene_id "ERV316A3_5q23.2e"; transcript_id "ERV316A3_5q23.2e"; locus "ERV316A3_5q23.2e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1118"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-223"; repStart "1"; ### HERVH_5q23.2g ### chr5 rmsk gene 126839337 126845705 . - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0510"; model_cov "5282"; model_pct "68.5"; chr5 rmsk exon 126839337 126839778 3251 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 126839779 126840159 2630 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr5 rmsk exon 126840158 126840374 1458 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 126840376 126841034 4277 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 126841037 126841897 6243 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3134"; repStart "-3720"; chr5 rmsk exon 126841869 126844447 16826 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "609"; repStart "-4718"; chr5 rmsk exon 126844449 126845252 5238 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "1"; repStart "-6946"; chr5 rmsk exon 126845255 126845705 3493 - . gene_id "HERVH_5q23.2g"; transcript_id "HERVH_5q23.2g"; locus "HERVH_5q23.2g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0510"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5q23.2f ### chr5 rmsk gene 127114902 127123399 . + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1119"; model_cov "5076"; model_pct "97.1"; chr5 rmsk exon 127114902 127115328 1563 + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1119"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 127115466 127118381 13969 + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1119"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "95"; chr5 rmsk exon 127118763 127120113 13969 + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1119"; repClass "LTR"; repEnd "4512"; repFamily "ERVL"; repLeft "-714"; repStart "3137"; chr5 rmsk exon 127122430 127122711 13969 + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1119"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "-440"; repStart "4513"; chr5 rmsk exon 127123013 127123399 13969 + . gene_id "ERV316A3_5q23.2f"; transcript_id "ERV316A3_5q23.2f"; locus "ERV316A3_5q23.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1119"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-52"; repStart "4787"; ### HERVL_5q23.2b ### chr5 rmsk gene 127673990 127680496 . + . gene_id "HERVL_5q23.2b"; transcript_id "HERVL_5q23.2b"; locus "HERVL_5q23.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0554"; model_cov "5634"; model_pct "99.6"; chr5 rmsk exon 127673990 127674370 2650 + . gene_id "HERVL_5q23.2b"; transcript_id "HERVL_5q23.2b"; locus "HERVL_5q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0554"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "2"; chr5 rmsk exon 127674443 127674483 2650 + . gene_id "HERVL_5q23.2b"; transcript_id "HERVL_5q23.2b"; locus "HERVL_5q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0554"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "404"; chr5 rmsk exon 127674484 127680145 43473 + . gene_id "HERVL_5q23.2b"; transcript_id "HERVL_5q23.2b"; locus "HERVL_5q23.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0554"; repClass "LTR"; repEnd "5635"; repFamily "ERVL"; repLeft "-19"; repStart "1"; chr5 rmsk exon 127680149 127680496 1887 + . gene_id "HERVL_5q23.2b"; transcript_id "HERVL_5q23.2b"; locus "HERVL_5q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0554"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "101"; ### ERV316A3_5q23.2g ### chr5 rmsk gene 127852336 127853268 . - . gene_id "ERV316A3_5q23.2g"; transcript_id "ERV316A3_5q23.2g"; locus "ERV316A3_5q23.2g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1120"; model_cov "635"; model_pct "12.2"; chr5 rmsk exon 127852336 127852572 610 - . gene_id "ERV316A3_5q23.2g"; transcript_id "ERV316A3_5q23.2g"; locus "ERV316A3_5q23.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1120"; repClass "LTR"; repEnd "744"; repFamily "ERVL"; repLeft "504"; repStart "-4482"; chr5 rmsk exon 127852591 127852812 599 - . gene_id "ERV316A3_5q23.2g"; transcript_id "ERV316A3_5q23.2g"; locus "ERV316A3_5q23.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1120"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "479"; repStart "-4517"; chr5 rmsk exon 127853100 127853268 599 - . gene_id "ERV316A3_5q23.2g"; transcript_id "ERV316A3_5q23.2g"; locus "ERV316A3_5q23.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1120"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "313"; repStart "-4748"; ### HML6_5q23.3 ### chr5 rmsk gene 128221540 128223733 . - . gene_id "HML6_5q23.3"; transcript_id "HML6_5q23.3"; locus "HML6_5q23.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0037"; model_cov "1172"; model_pct "16.3"; chr5 rmsk exon 128221540 128221629 536 - . gene_id "HML6_5q23.3"; transcript_id "HML6_5q23.3"; locus "HML6_5q23.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0037"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "411"; repStart "0"; chr5 rmsk exon 128221630 128222683 4486 - . gene_id "HML6_5q23.3"; transcript_id "HML6_5q23.3"; locus "HML6_5q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0037"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "1280"; repStart "-4967"; chr5 rmsk exon 128222833 128223057 508 - . gene_id "HML6_5q23.3"; transcript_id "HML6_5q23.3"; locus "HML6_5q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0037"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "15"; repStart "-6970"; chr5 rmsk exon 128223392 128223733 1891 - . gene_id "HML6_5q23.3"; transcript_id "HML6_5q23.3"; locus "HML6_5q23.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0037"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "158"; repStart "0"; ### ERVLE_5q23.3a ### chr5 rmsk gene 128597162 128600155 . - . gene_id "ERVLE_5q23.3a"; transcript_id "ERVLE_5q23.3a"; locus "ERVLE_5q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1485"; model_cov "802"; model_pct "14.2"; chr5 rmsk exon 128597162 128597710 1301 - . gene_id "ERVLE_5q23.3a"; transcript_id "ERVLE_5q23.3a"; locus "ERVLE_5q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1485"; repClass "LTR"; repEnd "5321"; repFamily "ERVL"; repLeft "4717"; repStart "-346"; chr5 rmsk exon 128599963 128600155 465 - . gene_id "ERVLE_5q23.3a"; transcript_id "ERVLE_5q23.3a"; locus "ERVLE_5q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1485"; repClass "LTR"; repEnd "1314"; repFamily "ERVL"; repLeft "1116"; repStart "-4353"; ### HERVL_5q23.3 ### chr5 rmsk gene 128630773 128635906 . - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0555"; model_cov "3798"; model_pct "67.2"; chr5 rmsk exon 128630773 128631297 1902 - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0555"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "42"; repStart "0"; chr5 rmsk exon 128631593 128631645 1902 - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0555"; repClass "LTR"; repEnd "41"; repFamily "ERVL"; repLeft "1"; repStart "-513"; chr5 rmsk exon 128631646 128632519 5758 - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0555"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4749"; repStart "0"; chr5 rmsk exon 128632518 128635321 17168 - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0555"; repClass "LTR"; repEnd "2894"; repFamily "ERVL"; repLeft "1"; repStart "-2760"; chr5 rmsk exon 128635322 128635906 2225 - . gene_id "HERVL_5q23.3"; transcript_id "HERVL_5q23.3"; locus "HERVL_5q23.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0555"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_5q23.3a ### chr5 rmsk gene 128665724 128668828 . - . gene_id "ERVL_5q23.3a"; transcript_id "ERVL_5q23.3a"; locus "ERVL_5q23.3a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0150"; model_cov "2228"; model_pct "38.7"; chr5 rmsk exon 128665724 128666289 2790 - . gene_id "ERVL_5q23.3a"; transcript_id "ERVL_5q23.3a"; locus "ERVL_5q23.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0150"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr5 rmsk exon 128666290 128668073 12922 - . gene_id "ERVL_5q23.3a"; transcript_id "ERVL_5q23.3a"; locus "ERVL_5q23.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0150"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3959"; repStart "0"; chr5 rmsk exon 128668381 128668828 12922 - . gene_id "ERVL_5q23.3a"; transcript_id "ERVL_5q23.3a"; locus "ERVL_5q23.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0150"; repClass "LTR"; repEnd "3958"; repFamily "ERVL"; repLeft "3528"; repStart "-1799"; ### HERVH_5q23.3 ### chr5 rmsk gene 128731345 128735997 . + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0512"; model_cov "4209"; model_pct "54.6"; chr5 rmsk exon 128731345 128732751 5387 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1393"; chr5 rmsk exon 128732752 128734588 7921 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr5 rmsk exon 128734580 128735001 2277 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr5 rmsk exon 128734995 128735031 3352 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "7193"; repFamily "ERV1"; repLeft "-520"; repStart "7157"; chr5 rmsk exon 128735073 128735567 3352 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7194"; chr5 rmsk exon 128735568 128735997 2384 + . gene_id "HERVH_5q23.3"; transcript_id "HERVH_5q23.3"; locus "HERVH_5q23.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0512"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_5q23.3b ### chr5 rmsk gene 129046158 129050595 . - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0152"; model_cov "3154"; model_pct "54.8"; chr5 rmsk exon 129046158 129046759 2228 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 129046760 129047102 1225 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5415"; repStart "0"; chr5 rmsk exon 129047116 129048271 6429 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "3877"; repStart "-717"; chr5 rmsk exon 129048271 129048886 1960 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "3735"; repFamily "ERVL"; repLeft "3034"; repStart "-2022"; chr5 rmsk exon 129049544 129049859 938 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "3479"; repFamily "ERVL"; repLeft "3176"; repStart "-2278"; chr5 rmsk exon 129049981 129050595 1070 - . gene_id "ERVL_5q23.3b"; transcript_id "ERVL_5q23.3b"; locus "ERVL_5q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0152"; repClass "LTR"; repEnd "2461"; repFamily "ERVL"; repLeft "1816"; repStart "-3296"; ### ERV316A3_5q23.3a ### chr5 rmsk gene 129088928 129090254 . - . gene_id "ERV316A3_5q23.3a"; transcript_id "ERV316A3_5q23.3a"; locus "ERV316A3_5q23.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1124"; model_cov "1396"; model_pct "26.7"; chr5 rmsk exon 129088928 129090254 2774 - . gene_id "ERV316A3_5q23.3a"; transcript_id "ERV316A3_5q23.3a"; locus "ERV316A3_5q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1124"; repClass "LTR"; repEnd "3844"; repFamily "ERVL"; repLeft "2448"; repStart "-1382"; ### ERVLE_5q23.3b ### chr5 rmsk gene 129217483 129220410 . + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1486"; model_cov "2442"; model_pct "43.1"; chr5 rmsk exon 129217483 129217650 275 + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1486"; repClass "LTR"; repEnd "1469"; repFamily "ERVL"; repLeft "-4198"; repStart "1295"; chr5 rmsk exon 129217874 129218913 1849 + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1486"; repClass "LTR"; repEnd "2798"; repFamily "ERVL"; repLeft "-2869"; repStart "1735"; chr5 rmsk exon 129219066 129219504 805 + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1486"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "-2141"; repStart "3072"; chr5 rmsk exon 129219654 129220140 623 + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1486"; repClass "LTR"; repEnd "4010"; repFamily "ERVL"; repLeft "-1657"; repStart "3538"; chr5 rmsk exon 129220157 129220410 579 + . gene_id "ERVLE_5q23.3b"; transcript_id "ERVLE_5q23.3b"; locus "ERVLE_5q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1486"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "-990"; repStart "4398"; ### ERVLE_5q23.3c ### chr5 rmsk gene 129277463 129278733 . + . gene_id "ERVLE_5q23.3c"; transcript_id "ERVLE_5q23.3c"; locus "ERVLE_5q23.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1488"; model_cov "695"; model_pct "12.3"; chr5 rmsk exon 129277463 129277577 297 + . gene_id "ERVLE_5q23.3c"; transcript_id "ERVLE_5q23.3c"; locus "ERVLE_5q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1488"; repClass "LTR"; repEnd "4373"; repFamily "ERVL"; repLeft "-1294"; repStart "4252"; chr5 rmsk exon 129277876 129278264 954 + . gene_id "ERVLE_5q23.3c"; transcript_id "ERVLE_5q23.3c"; locus "ERVLE_5q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1488"; repClass "LTR"; repEnd "5063"; repFamily "ERVL"; repLeft "-604"; repStart "4658"; chr5 rmsk exon 129278568 129278733 954 + . gene_id "ERVLE_5q23.3c"; transcript_id "ERVLE_5q23.3c"; locus "ERVLE_5q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1488"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "5064"; ### ERVLE_5q23.3d ### chr5 rmsk gene 129307464 129309200 . - . gene_id "ERVLE_5q23.3d"; transcript_id "ERVLE_5q23.3d"; locus "ERVLE_5q23.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1490"; model_cov "1705"; model_pct "30.1"; chr5 rmsk exon 129307464 129307972 556 - . gene_id "ERVLE_5q23.3d"; transcript_id "ERVLE_5q23.3d"; locus "ERVLE_5q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1490"; repClass "LTR"; repEnd "3598"; repFamily "ERVL"; repLeft "2951"; repStart "-2069"; chr5 rmsk exon 129307970 129308098 317 - . gene_id "ERVLE_5q23.3d"; transcript_id "ERVLE_5q23.3d"; locus "ERVLE_5q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1490"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "2875"; repStart "-2644"; chr5 rmsk exon 129308226 129308734 559 - . gene_id "ERVLE_5q23.3d"; transcript_id "ERVLE_5q23.3d"; locus "ERVLE_5q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1490"; repClass "LTR"; repEnd "2522"; repFamily "ERVL"; repLeft "2035"; repStart "-3145"; chr5 rmsk exon 129308782 129309200 642 - . gene_id "ERVLE_5q23.3d"; transcript_id "ERVLE_5q23.3d"; locus "ERVLE_5q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1490"; repClass "LTR"; repEnd "1545"; repFamily "ERVL"; repLeft "1122"; repStart "-4122"; ### HERVL40_5q23.3 ### chr5 rmsk gene 129396105 129397080 . - . gene_id "HERVL40_5q23.3"; transcript_id "HERVL40_5q23.3"; locus "HERVL40_5q23.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0167"; model_cov "982"; model_pct "17.8"; chr5 rmsk exon 129396105 129397020 3013 - . gene_id "HERVL40_5q23.3"; transcript_id "HERVL40_5q23.3"; locus "HERVL40_5q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0167"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "3695"; repStart "-898"; chr5 rmsk exon 129397036 129397080 334 - . gene_id "HERVL40_5q23.3"; transcript_id "HERVL40_5q23.3"; locus "HERVL40_5q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0167"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "410"; repStart "-5075"; ### ERV316A3_5q23.3b ### chr5 rmsk gene 129439362 129441828 . + . gene_id "ERV316A3_5q23.3b"; transcript_id "ERV316A3_5q23.3b"; locus "ERV316A3_5q23.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1125"; model_cov "1564"; model_pct "29.9"; chr5 rmsk exon 129439362 129440266 2213 + . gene_id "ERV316A3_5q23.3b"; transcript_id "ERV316A3_5q23.3b"; locus "ERV316A3_5q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1125"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2383"; chr5 rmsk exon 129441193 129441828 1766 + . gene_id "ERV316A3_5q23.3b"; transcript_id "ERV316A3_5q23.3b"; locus "ERV316A3_5q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1125"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "-923"; repStart "3633"; ### ERVLE_5q23.3e ### chr5 rmsk gene 129446684 129448391 . - . gene_id "ERVLE_5q23.3e"; transcript_id "ERVLE_5q23.3e"; locus "ERVLE_5q23.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1491"; model_cov "1085"; model_pct "19.1"; chr5 rmsk exon 129446684 129447107 1230 - . gene_id "ERVLE_5q23.3e"; transcript_id "ERVLE_5q23.3e"; locus "ERVLE_5q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1491"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "2035"; repStart "-3181"; chr5 rmsk exon 129447589 129447864 294 - . gene_id "ERVLE_5q23.3e"; transcript_id "ERVLE_5q23.3e"; locus "ERVLE_5q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1491"; repClass "LTR"; repEnd "1969"; repFamily "ERVL"; repLeft "1683"; repStart "-3698"; chr5 rmsk exon 129448076 129448391 765 - . gene_id "ERVLE_5q23.3e"; transcript_id "ERVLE_5q23.3e"; locus "ERVLE_5q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1491"; repClass "LTR"; repEnd "1473"; repFamily "ERVL"; repLeft "1125"; repStart "-4194"; ### ERVLB4_5q23.3 ### chr5 rmsk gene 129738869 129743898 . - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0665"; model_cov "3419"; model_pct "59.8"; chr5 rmsk exon 129738869 129738953 410 - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0665"; repClass "LTR"; repEnd "5480"; repFamily "ERVL"; repLeft "5396"; repStart "-234"; chr5 rmsk exon 129738967 129740798 5898 - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0665"; repClass "LTR"; repEnd "4757"; repFamily "ERVL"; repLeft "2818"; repStart "-957"; chr5 rmsk exon 129740786 129741045 2769 - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0665"; repClass "LTR"; repEnd "1804"; repFamily "ERVL"; repLeft "1555"; repStart "-3910"; chr5 rmsk exon 129741408 129742136 2769 - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0665"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "806"; repStart "-4153"; chr5 rmsk exon 129743497 129743898 1512 - . gene_id "ERVLB4_5q23.3"; transcript_id "ERVLB4_5q23.3"; locus "ERVLB4_5q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0665"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "58"; repStart "-5264"; ### ERVLE_5q23.3f ### chr5 rmsk gene 129807232 129809069 . + . gene_id "ERVLE_5q23.3f"; transcript_id "ERVLE_5q23.3f"; locus "ERVLE_5q23.3f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1492"; model_cov "1169"; model_pct "20.6"; chr5 rmsk exon 129807232 129807805 1883 + . gene_id "ERVLE_5q23.3f"; transcript_id "ERVLE_5q23.3f"; locus "ERVLE_5q23.3f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1492"; repClass "LTR"; repEnd "622"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr5 rmsk exon 129807933 129808472 2877 + . gene_id "ERVLE_5q23.3f"; transcript_id "ERVLE_5q23.3f"; locus "ERVLE_5q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1492"; repClass "LTR"; repEnd "594"; repFamily "ERVL"; repLeft "-5073"; repStart "5"; chr5 rmsk exon 129808541 129809069 2877 + . gene_id "ERVLE_5q23.3f"; transcript_id "ERVLE_5q23.3f"; locus "ERVLE_5q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1492"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "-4492"; repStart "595"; ### ERV316A3_5q23.3c ### chr5 rmsk gene 129856923 129861613 . + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1126"; model_cov "3834"; model_pct "73.4"; chr5 rmsk exon 129856923 129857407 1727 + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1126"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "8"; chr5 rmsk exon 129857745 129858185 607 + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1126"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-4828"; repStart "-170"; chr5 rmsk exon 129858447 129859449 1153 + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1126"; repClass "LTR"; repEnd "2520"; repFamily "ERVL"; repLeft "-2706"; repStart "1361"; chr5 rmsk exon 129859563 129860056 698 + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1126"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "-2116"; repStart "2539"; chr5 rmsk exon 129860331 129861613 2029 + . gene_id "ERV316A3_5q23.3c"; transcript_id "ERV316A3_5q23.3c"; locus "ERV316A3_5q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1126"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "-390"; repStart "3300"; ### ERVLE_5q23.3g ### chr5 rmsk gene 130212683 130215843 . + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1495"; model_cov "1667"; model_pct "29.4"; chr5 rmsk exon 130212683 130212798 486 + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1495"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "-2408"; repStart "3142"; chr5 rmsk exon 130213694 130214244 781 + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1495"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "-2025"; repStart "3008"; chr5 rmsk exon 130214444 130214746 808 + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1495"; repClass "LTR"; repEnd "4185"; repFamily "ERVL"; repLeft "-1482"; repStart "3880"; chr5 rmsk exon 130215145 130215488 737 + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1495"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-601"; repStart "4729"; chr5 rmsk exon 130215576 130215843 320 + . gene_id "ERVLE_5q23.3g"; transcript_id "ERVLE_5q23.3g"; locus "ERVLE_5q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1495"; repClass "LTR"; repEnd "5488"; repFamily "ERVL"; repLeft "-179"; repStart "5214"; ### ERVLE_5q23.3h ### chr5 rmsk gene 130299867 130301538 . + . gene_id "ERVLE_5q23.3h"; transcript_id "ERVLE_5q23.3h"; locus "ERVLE_5q23.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1496"; model_cov "1859"; model_pct "32.8"; chr5 rmsk exon 130299867 130301538 3525 + . gene_id "ERVLE_5q23.3h"; transcript_id "ERVLE_5q23.3h"; locus "ERVLE_5q23.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1496"; repClass "LTR"; repEnd "3176"; repFamily "ERVL"; repLeft "-2491"; repStart "1317"; ### ERVLE_5q23.3i ### chr5 rmsk gene 130355285 130357115 . + . gene_id "ERVLE_5q23.3i"; transcript_id "ERVLE_5q23.3i"; locus "ERVLE_5q23.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1497"; model_cov "1166"; model_pct "20.6"; chr5 rmsk exon 130355285 130355533 482 + . gene_id "ERVLE_5q23.3i"; transcript_id "ERVLE_5q23.3i"; locus "ERVLE_5q23.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1497"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "-5415"; repStart "5"; chr5 rmsk exon 130356225 130356333 496 + . gene_id "ERVLE_5q23.3i"; transcript_id "ERVLE_5q23.3i"; locus "ERVLE_5q23.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1497"; repClass "LTR"; repEnd "2247"; repFamily "ERVL"; repLeft "-3420"; repStart "2129"; chr5 rmsk exon 130356340 130356698 617 + . gene_id "ERVLE_5q23.3i"; transcript_id "ERVLE_5q23.3i"; locus "ERVLE_5q23.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1497"; repClass "LTR"; repEnd "2796"; repFamily "ERVL"; repLeft "-2871"; repStart "2348"; chr5 rmsk exon 130356774 130357115 685 + . gene_id "ERVLE_5q23.3i"; transcript_id "ERVLE_5q23.3i"; locus "ERVLE_5q23.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1497"; repClass "LTR"; repEnd "3257"; repFamily "ERVL"; repLeft "-2410"; repStart "2904"; ### HERVP71A_5q23.3 ### chr5 rmsk gene 130542959 130550117 . - . gene_id "HERVP71A_5q23.3"; transcript_id "HERVP71A_5q23.3"; locus "HERVP71A_5q23.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0029"; model_cov "6836"; model_pct "90.1"; chr5 rmsk exon 130542959 130549658 56793 - . gene_id "HERVP71A_5q23.3"; transcript_id "HERVP71A_5q23.3"; locus "HERVP71A_5q23.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0029"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "754"; repStart "0"; chr5 rmsk exon 130549659 130550117 3578 - . gene_id "HERVP71A_5q23.3"; transcript_id "HERVP71A_5q23.3"; locus "HERVP71A_5q23.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0029"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_5q23.3 ### chr5 rmsk gene 130633383 130642483 . + . gene_id "HERV9_5q23.3"; transcript_id "HERV9_5q23.3"; locus "HERV9_5q23.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0060"; model_cov "8434"; model_pct "100.0"; chr5 rmsk exon 130633383 130634069 5442 + . gene_id "HERV9_5q23.3"; transcript_id "HERV9_5q23.3"; locus "HERV9_5q23.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0060"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 130634070 130638055 35303 + . gene_id "HERV9_5q23.3"; transcript_id "HERV9_5q23.3"; locus "HERV9_5q23.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0060"; repClass "LTR"; repEnd "4968"; repFamily "ERV1"; repLeft "-3468"; repStart "1"; chr5 rmsk exon 130638376 130641822 35303 + . gene_id "HERV9_5q23.3"; transcript_id "HERV9_5q23.3"; locus "HERV9_5q23.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0060"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "4969"; chr5 rmsk exon 130641824 130642483 5186 + . gene_id "HERV9_5q23.3"; transcript_id "HERV9_5q23.3"; locus "HERV9_5q23.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0060"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-1"; repStart "2"; ### ERV316A3_5q23.3d ### chr5 rmsk gene 131064049 131065413 . - . gene_id "ERV316A3_5q23.3d"; transcript_id "ERV316A3_5q23.3d"; locus "ERV316A3_5q23.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1127"; model_cov "1166"; model_pct "22.3"; chr5 rmsk exon 131064049 131065196 2707 - . gene_id "ERV316A3_5q23.3d"; transcript_id "ERV316A3_5q23.3d"; locus "ERV316A3_5q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1127"; repClass "LTR"; repEnd "1208"; repFamily "ERVL"; repLeft "42"; repStart "-4018"; chr5 rmsk exon 131065232 131065413 392 - . gene_id "ERV316A3_5q23.3d"; transcript_id "ERV316A3_5q23.3d"; locus "ERV316A3_5q23.3d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1127"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "223"; repStart "-6"; ### ERVLE_5q31.1a ### chr5 rmsk gene 131225382 131226891 . + . gene_id "ERVLE_5q31.1a"; transcript_id "ERVLE_5q31.1a"; locus "ERVLE_5q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1500"; model_cov "1510"; model_pct "26.6"; chr5 rmsk exon 131225382 131226063 2904 + . gene_id "ERVLE_5q31.1a"; transcript_id "ERVLE_5q31.1a"; locus "ERVLE_5q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1500"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "-4571"; repStart "377"; chr5 rmsk exon 131226062 131226259 797 + . gene_id "ERVLE_5q31.1a"; transcript_id "ERVLE_5q31.1a"; locus "ERVLE_5q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1500"; repClass "LTR"; repEnd "1597"; repFamily "ERVL"; repLeft "-4070"; repStart "1398"; chr5 rmsk exon 131226294 131226891 2986 + . gene_id "ERVLE_5q31.1a"; transcript_id "ERVLE_5q31.1a"; locus "ERVLE_5q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1500"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "-3478"; repStart "1597"; ### HERVH_5q31.1a ### chr5 rmsk gene 131571880 131582180 . + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0513"; model_cov "7697"; model_pct "99.8"; chr5 rmsk exon 131571880 131572163 1469 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "185"; chr5 rmsk exon 131572164 131572584 1094 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-7277"; repStart "1"; chr5 rmsk exon 131572673 131578926 30940 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "6590"; repFamily "ERV1"; repLeft "-1123"; repStart "450"; chr5 rmsk exon 131580585 131581707 30940 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6591"; chr5 rmsk exon 131581756 131581868 293 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "288"; repFamily "ERV1"; repLeft "-184"; repStart "179"; chr5 rmsk exon 131581890 131582180 1440 + . gene_id "HERVH_5q31.1a"; transcript_id "HERVH_5q31.1a"; locus "HERVH_5q31.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0513"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "181"; ### ERV316A3_5q31.1a ### chr5 rmsk gene 131606973 131611288 . + . gene_id "ERV316A3_5q31.1a"; transcript_id "ERV316A3_5q31.1a"; locus "ERV316A3_5q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1128"; model_cov "2570"; model_pct "49.2"; chr5 rmsk exon 131606973 131607831 1833 + . gene_id "ERV316A3_5q31.1a"; transcript_id "ERV316A3_5q31.1a"; locus "ERV316A3_5q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1128"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2483"; repStart "1891"; chr5 rmsk exon 131608450 131608551 5532 + . gene_id "ERV316A3_5q31.1a"; transcript_id "ERV316A3_5q31.1a"; locus "ERV316A3_5q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1128"; repClass "LTR"; repEnd "3608"; repFamily "ERVL"; repLeft "-1618"; repStart "3503"; chr5 rmsk exon 131609283 131610856 5532 + . gene_id "ERV316A3_5q31.1a"; transcript_id "ERV316A3_5q31.1a"; locus "ERV316A3_5q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1128"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "3609"; chr5 rmsk exon 131610864 131611288 1470 + . gene_id "ERV316A3_5q31.1a"; transcript_id "ERV316A3_5q31.1a"; locus "ERV316A3_5q31.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1128"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-1"; repStart "4"; ### ERVLB4_5q31.1 ### chr5 rmsk gene 131812471 131817329 . + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0666"; model_cov "2766"; model_pct "48.4"; chr5 rmsk exon 131812471 131813426 11794 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "-1888"; repStart "2859"; chr5 rmsk exon 131813727 131813795 11794 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "3887"; repFamily "ERVL"; repLeft "-1827"; repStart "3827"; chr5 rmsk exon 131814240 131814278 11794 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "3926"; repFamily "ERVL"; repLeft "-1788"; repStart "3888"; chr5 rmsk exon 131814573 131815945 11794 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "5318"; repFamily "ERVL"; repLeft "-396"; repStart "3927"; chr5 rmsk exon 131815943 131816235 1386 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "-4"; repStart "5400"; chr5 rmsk exon 131816239 131816580 1381 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-65"; repStart "1"; chr5 rmsk exon 131816867 131817329 2653 + . gene_id "ERVLB4_5q31.1"; transcript_id "ERVLB4_5q31.1"; locus "ERVLB4_5q31.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0666"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-60"; repStart "1"; ### LTR57_5q31.1 ### chr5 rmsk gene 132281240 132287803 . - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0072"; model_cov "5340"; model_pct "99.9"; chr5 rmsk exon 132281240 132281650 2856 - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0072"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 132281651 132283037 36024 - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0072"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "3910"; repStart "0"; chr5 rmsk exon 132283296 132285518 36024 - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0072"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "1694"; repStart "-1434"; chr5 rmsk exon 132285802 132287406 36024 - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0072"; repClass "LTR"; repEnd "1693"; repFamily "ERVL"; repLeft "1"; repStart "-3650"; chr5 rmsk exon 132287407 132287803 2659 - . gene_id "LTR57_5q31.1"; transcript_id "LTR57_5q31.1"; locus "LTR57_5q31.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0072"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5q31.1b ### chr5 rmsk gene 132288665 132289427 . + . gene_id "ERVLE_5q31.1b"; transcript_id "ERVLE_5q31.1b"; locus "ERVLE_5q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1502"; model_cov "719"; model_pct "12.7"; chr5 rmsk exon 132288665 132289072 611 + . gene_id "ERVLE_5q31.1b"; transcript_id "ERVLE_5q31.1b"; locus "ERVLE_5q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1502"; repClass "LTR"; repEnd "1541"; repFamily "ERVL"; repLeft "-4126"; repStart "1136"; chr5 rmsk exon 132289119 132289427 516 + . gene_id "ERVLE_5q31.1b"; transcript_id "ERVLE_5q31.1b"; locus "ERVLE_5q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1502"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3714"; repStart "1639"; ### ERVLE_5q31.1c ### chr5 rmsk gene 132289440 132292324 . + . gene_id "ERVLE_5q31.1c"; transcript_id "ERVLE_5q31.1c"; locus "ERVLE_5q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1503"; model_cov "2221"; model_pct "39.2"; chr5 rmsk exon 132289440 132289528 1464 + . gene_id "ERVLE_5q31.1c"; transcript_id "ERVLE_5q31.1c"; locus "ERVLE_5q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1503"; repClass "LTR"; repEnd "1473"; repFamily "ERVL"; repLeft "-4194"; repStart "1391"; chr5 rmsk exon 132289814 132290888 1464 + . gene_id "ERVLE_5q31.1c"; transcript_id "ERVLE_5q31.1c"; locus "ERVLE_5q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1503"; repClass "LTR"; repEnd "2775"; repFamily "ERVL"; repLeft "-2892"; repStart "1474"; chr5 rmsk exon 132291157 132291570 1332 + . gene_id "ERVLE_5q31.1c"; transcript_id "ERVLE_5q31.1c"; locus "ERVLE_5q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1503"; repClass "LTR"; repEnd "3361"; repFamily "ERVL"; repLeft "-2306"; repStart "2955"; chr5 rmsk exon 132291870 132292324 1332 + . gene_id "ERVLE_5q31.1c"; transcript_id "ERVLE_5q31.1c"; locus "ERVLE_5q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1503"; repClass "LTR"; repEnd "3794"; repFamily "ERVL"; repLeft "-1873"; repStart "3362"; ### ERVLE_5q31.1d ### chr5 rmsk gene 132535254 132537474 . + . gene_id "ERVLE_5q31.1d"; transcript_id "ERVLE_5q31.1d"; locus "ERVLE_5q31.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1504"; model_cov "1392"; model_pct "24.6"; chr5 rmsk exon 132535254 132535667 612 + . gene_id "ERVLE_5q31.1d"; transcript_id "ERVLE_5q31.1d"; locus "ERVLE_5q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1504"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "-4199"; repStart "1065"; chr5 rmsk exon 132536385 132536403 612 + . gene_id "ERVLE_5q31.1d"; transcript_id "ERVLE_5q31.1d"; locus "ERVLE_5q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1504"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "-4181"; repStart "1469"; chr5 rmsk exon 132536478 132537474 1166 + . gene_id "ERVLE_5q31.1d"; transcript_id "ERVLE_5q31.1d"; locus "ERVLE_5q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1504"; repClass "LTR"; repEnd "2361"; repFamily "ERVL"; repLeft "-3306"; repStart "1389"; ### ERVLE_5q31.1e ### chr5 rmsk gene 133774649 133775920 . + . gene_id "ERVLE_5q31.1e"; transcript_id "ERVLE_5q31.1e"; locus "ERVLE_5q31.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1505"; model_cov "1185"; model_pct "20.9"; chr5 rmsk exon 133774649 133775392 1831 + . gene_id "ERVLE_5q31.1e"; transcript_id "ERVLE_5q31.1e"; locus "ERVLE_5q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1505"; repClass "LTR"; repEnd "3292"; repFamily "ERVL"; repLeft "-2375"; repStart "2509"; chr5 rmsk exon 133775546 133775920 1244 + . gene_id "ERVLE_5q31.1e"; transcript_id "ERVLE_5q31.1e"; locus "ERVLE_5q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1505"; repClass "LTR"; repEnd "3732"; repFamily "ERVL"; repLeft "-1935"; repStart "3330"; ### ERVLE_5q31.1f ### chr5 rmsk gene 133939624 133941351 . - . gene_id "ERVLE_5q31.1f"; transcript_id "ERVLE_5q31.1f"; locus "ERVLE_5q31.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1506"; model_cov "947"; model_pct "16.7"; chr5 rmsk exon 133939624 133939654 955 - . gene_id "ERVLE_5q31.1f"; transcript_id "ERVLE_5q31.1f"; locus "ERVLE_5q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1506"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "4928"; repStart "-712"; chr5 rmsk exon 133940399 133940651 955 - . gene_id "ERVLE_5q31.1f"; transcript_id "ERVLE_5q31.1f"; locus "ERVLE_5q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1506"; repClass "LTR"; repEnd "4927"; repFamily "ERVL"; repLeft "4659"; repStart "-740"; chr5 rmsk exon 133940732 133941351 1440 - . gene_id "ERVLE_5q31.1f"; transcript_id "ERVLE_5q31.1f"; locus "ERVLE_5q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1506"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "1489"; repStart "-3526"; ### ERV316A3_5q31.1b ### chr5 rmsk gene 134273494 134276817 . - . gene_id "ERV316A3_5q31.1b"; transcript_id "ERV316A3_5q31.1b"; locus "ERV316A3_5q31.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1129"; model_cov "2420"; model_pct "46.3"; chr5 rmsk exon 134273494 134273928 1719 - . gene_id "ERV316A3_5q31.1b"; transcript_id "ERV316A3_5q31.1b"; locus "ERV316A3_5q31.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1129"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chr5 rmsk exon 134273933 134275146 4490 - . gene_id "ERV316A3_5q31.1b"; transcript_id "ERV316A3_5q31.1b"; locus "ERV316A3_5q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1129"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4031"; repStart "-1"; chr5 rmsk exon 134275198 134276392 3449 - . gene_id "ERV316A3_5q31.1b"; transcript_id "ERV316A3_5q31.1b"; locus "ERV316A3_5q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1129"; repClass "LTR"; repEnd "1231"; repFamily "ERVL"; repLeft "5"; repStart "-3995"; chr5 rmsk exon 134276393 134276817 1674 - . gene_id "ERV316A3_5q31.1b"; transcript_id "ERV316A3_5q31.1b"; locus "ERV316A3_5q31.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1129"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5q31.1g ### chr5 rmsk gene 135651743 135653623 . + . gene_id "ERVLE_5q31.1g"; transcript_id "ERVLE_5q31.1g"; locus "ERVLE_5q31.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1507"; model_cov "1533"; model_pct "27.1"; chr5 rmsk exon 135651743 135652784 4622 + . gene_id "ERVLE_5q31.1g"; transcript_id "ERVLE_5q31.1g"; locus "ERVLE_5q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1507"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "-913"; repStart "3693"; chr5 rmsk exon 135652789 135652856 1679 + . gene_id "ERVLE_5q31.1g"; transcript_id "ERVLE_5q31.1g"; locus "ERVLE_5q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1507"; repClass "LTR"; repEnd "4902"; repFamily "ERVL"; repLeft "-765"; repStart "4835"; chr5 rmsk exon 135653230 135653623 1679 + . gene_id "ERVLE_5q31.1g"; transcript_id "ERVLE_5q31.1g"; locus "ERVLE_5q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1507"; repClass "LTR"; repEnd "5308"; repFamily "ERVL"; repLeft "-359"; repStart "4903"; ### HERVH_5q31.1b ### chr5 rmsk gene 135730999 135737486 . - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0514"; model_cov "5892"; model_pct "76.4"; chr5 rmsk exon 135730999 135731384 2375 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 135731385 135731774 2673 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7325"; repStart "0"; chr5 rmsk exon 135731776 135732004 1515 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5590"; repStart "-1894"; chr5 rmsk exon 135731996 135733855 8115 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4416"; repStart "-1290"; chr5 rmsk exon 135733849 135734545 8236 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "4137"; repFamily "ERV1"; repLeft "3216"; repStart "-3576"; chr5 rmsk exon 135734846 135737087 8236 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "3407"; repFamily "ERV1"; repLeft "1060"; repStart "-4306"; chr5 rmsk exon 135737090 135737486 2536 - . gene_id "HERVH_5q31.1b"; transcript_id "HERVH_5q31.1b"; locus "HERVH_5q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0514"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_5q31.1h ### chr5 rmsk gene 135949352 135950116 . - . gene_id "ERVLE_5q31.1h"; transcript_id "ERVLE_5q31.1h"; locus "ERVLE_5q31.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1508"; model_cov "727"; model_pct "12.8"; chr5 rmsk exon 135949352 135949942 2518 - . gene_id "ERVLE_5q31.1h"; transcript_id "ERVLE_5q31.1h"; locus "ERVLE_5q31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1508"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "1485"; repStart "-3589"; chr5 rmsk exon 135949986 135950116 359 - . gene_id "ERVLE_5q31.1h"; transcript_id "ERVLE_5q31.1h"; locus "ERVLE_5q31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1508"; repClass "LTR"; repEnd "1378"; repFamily "ERVL"; repLeft "1244"; repStart "-4289"; ### HERVH_5q31.1c ### chr5 rmsk gene 136301374 136307022 . + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0515"; model_cov "4908"; model_pct "63.6"; chr5 rmsk exon 136301374 136301833 3798 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 136301836 136304713 16250 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr5 rmsk exon 136304708 136304855 845 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 136304846 136305348 3465 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 136305351 136305999 4218 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 136306001 136306217 1494 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 136306216 136306562 1918 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr5 rmsk exon 136306563 136307022 3741 + . gene_id "HERVH_5q31.1c"; transcript_id "HERVH_5q31.1c"; locus "HERVH_5q31.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0515"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5q31.1c ### chr5 rmsk gene 136369855 136375660 . + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1130"; model_cov "3788"; model_pct "72.5"; chr5 rmsk exon 136369855 136370209 424 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "-7"; repStart "30"; chr5 rmsk exon 136370336 136370791 2642 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "581"; repFamily "ERVL"; repLeft "-4645"; repStart "97"; chr5 rmsk exon 136371032 136372097 2642 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "1626"; repFamily "ERVL"; repLeft "-3600"; repStart "582"; chr5 rmsk exon 136372887 136372978 2642 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "1705"; repFamily "ERVL"; repLeft "-3521"; repStart "1627"; chr5 rmsk exon 136373025 136375210 6400 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "2995"; chr5 rmsk exon 136375255 136375660 387 + . gene_id "ERV316A3_5q31.1c"; transcript_id "ERV316A3_5q31.1c"; locus "ERV316A3_5q31.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1130"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_5q31.1d ### chr5 rmsk gene 136540943 136545393 . - . gene_id "HERVH_5q31.1d"; transcript_id "HERVH_5q31.1d"; locus "HERVH_5q31.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0516"; model_cov "6205"; model_pct "80.4"; chr5 rmsk exon 136540943 136541374 2628 - . gene_id "HERVH_5q31.1d"; transcript_id "HERVH_5q31.1d"; locus "HERVH_5q31.1d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0516"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 136541375 136541750 2335 - . gene_id "HERVH_5q31.1d"; transcript_id "HERVH_5q31.1d"; locus "HERVH_5q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0516"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr5 rmsk exon 136541753 136544965 19253 - . gene_id "HERVH_5q31.1d"; transcript_id "HERVH_5q31.1d"; locus "HERVH_5q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0516"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "1"; repStart "-1894"; chr5 rmsk exon 136544968 136545393 2583 - . gene_id "HERVH_5q31.1d"; transcript_id "HERVH_5q31.1d"; locus "HERVH_5q31.1d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0516"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "23"; repStart "-2"; ### HERVH_5q31.1e ### chr5 rmsk gene 136546331 136550739 . - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0517"; model_cov "3983"; model_pct "51.6"; chr5 rmsk exon 136546331 136546760 2644 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 136546761 136547136 2391 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr5 rmsk exon 136547139 136547361 1266 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 136547363 136548021 4012 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 136548024 136548517 3132 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr5 rmsk exon 136548517 136548664 780 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 136548659 136550739 8334 - . gene_id "HERVH_5q31.1e"; transcript_id "HERVH_5q31.1e"; locus "HERVH_5q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0517"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "914"; repStart "-4726"; ### HERVH_5q31.1f ### chr5 rmsk gene 136565340 136571245 . - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0518"; model_cov "5059"; model_pct "65.6"; chr5 rmsk exon 136565340 136565790 3370 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 136565791 136566157 2273 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 136566158 136566375 1280 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 136566377 136567038 4089 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 136567041 136567545 3183 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 136567536 136570794 18764 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr5 rmsk exon 136570797 136571245 3348 - . gene_id "HERVH_5q31.1f"; transcript_id "HERVH_5q31.1f"; locus "HERVH_5q31.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0518"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER101_5q31.1 ### chr5 rmsk gene 136692767 136695215 . - . gene_id "MER101_5q31.1"; transcript_id "MER101_5q31.1"; locus "MER101_5q31.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0162"; model_cov "2143"; model_pct "32.3"; chr5 rmsk exon 136692767 136693200 2457 - . gene_id "MER101_5q31.1"; transcript_id "MER101_5q31.1"; locus "MER101_5q31.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0162"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr5 rmsk exon 136693202 136693811 2478 - . gene_id "MER101_5q31.1"; transcript_id "MER101_5q31.1"; locus "MER101_5q31.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0162"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6009"; repStart "0"; chr5 rmsk exon 136693817 136695215 3762 - . gene_id "MER101_5q31.1"; transcript_id "MER101_5q31.1"; locus "MER101_5q31.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0162"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "3889"; repStart "-1237"; ### HERVH_5q31.1g ### chr5 rmsk gene 136737043 136739624 . + . gene_id "HERVH_5q31.1g"; transcript_id "HERVH_5q31.1g"; locus "HERVH_5q31.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0519"; model_cov "1663"; model_pct "21.6"; chr5 rmsk exon 136737043 136737432 2067 + . gene_id "HERVH_5q31.1g"; transcript_id "HERVH_5q31.1g"; locus "HERVH_5q31.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0519"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr5 rmsk exon 136737435 136739073 4519 + . gene_id "HERVH_5q31.1g"; transcript_id "HERVH_5q31.1g"; locus "HERVH_5q31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0519"; repClass "LTR"; repEnd "1516"; repFamily "ERV1"; repLeft "-6197"; repStart "1"; chr5 rmsk exon 136739092 136739242 937 + . gene_id "HERVH_5q31.1g"; transcript_id "HERVH_5q31.1g"; locus "HERVH_5q31.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0519"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7565"; chr5 rmsk exon 136739243 136739624 1931 + . gene_id "HERVH_5q31.1g"; transcript_id "HERVH_5q31.1g"; locus "HERVH_5q31.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0519"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_5q31.2 ### chr5 rmsk gene 137510649 137511524 . - . gene_id "ERV316A3_5q31.2"; transcript_id "ERV316A3_5q31.2"; locus "ERV316A3_5q31.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1131"; model_cov "648"; model_pct "12.4"; chr5 rmsk exon 137510649 137510906 810 - . gene_id "ERV316A3_5q31.2"; transcript_id "ERV316A3_5q31.2"; locus "ERV316A3_5q31.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1131"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "157"; repStart "-15"; chr5 rmsk exon 137510907 137511524 1802 - . gene_id "ERV316A3_5q31.2"; transcript_id "ERV316A3_5q31.2"; locus "ERV316A3_5q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1131"; repClass "LTR"; repEnd "4546"; repFamily "ERVL"; repLeft "3898"; repStart "-680"; ### HERV9_5q31.2 ### chr5 rmsk gene 139502943 139512402 . + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0061"; model_cov "7474"; model_pct "88.6"; chr5 rmsk exon 139502943 139503773 5058 + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0061"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 139503787 139510234 51636 + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0061"; repClass "LTR"; repEnd "6479"; repFamily "ERV1"; repLeft "-1957"; repStart "40"; chr5 rmsk exon 139510235 139511266 8363 + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0061"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7401"; chr5 rmsk exon 139511267 139511376 4952 + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0061"; repClass "LTR"; repEnd "111"; repFamily "ERV1"; repLeft "-715"; repStart "1"; chr5 rmsk exon 139511678 139512402 4952 + . gene_id "HERV9_5q31.2"; transcript_id "HERV9_5q31.2"; locus "HERV9_5q31.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0061"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "-1"; repStart "112"; ### HARLEQUIN_5q31.2 ### chr5 rmsk gene 139525866 139531564 . + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0077"; model_cov "4767"; model_pct "69.1"; chr5 rmsk exon 139525866 139526346 4113 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 139526347 139526725 2741 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr5 rmsk exon 139526721 139527362 4312 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "-6003"; repStart "262"; chr5 rmsk exon 139527356 139527823 2706 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "2056"; repFamily "ERV1"; repLeft "-4840"; repStart "1572"; chr5 rmsk exon 139527817 139528355 4212 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "3959"; repFamily "ERV1"; repLeft "-2937"; repStart "3407"; chr5 rmsk exon 139528350 139531085 16635 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "4175"; chr5 rmsk exon 139531087 139531564 4117 + . gene_id "HARLEQUIN_5q31.2"; transcript_id "HARLEQUIN_5q31.2"; locus "HARLEQUIN_5q31.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0077"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_5q31.3a ### chr5 rmsk gene 140626288 140628416 . - . gene_id "MER41_5q31.3a"; transcript_id "MER41_5q31.3a"; locus "MER41_5q31.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0193"; model_cov "1567"; model_pct "26.4"; chr5 rmsk exon 140626288 140626399 813 - . gene_id "MER41_5q31.3a"; transcript_id "MER41_5q31.3a"; locus "MER41_5q31.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0193"; repClass "LTR"; repEnd "3730"; repFamily "ERV1"; repLeft "3619"; repStart "-2216"; chr5 rmsk exon 140626852 140627724 5681 - . gene_id "MER41_5q31.3a"; transcript_id "MER41_5q31.3a"; locus "MER41_5q31.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0193"; repClass "LTR"; repEnd "2003"; repFamily "ERV1"; repLeft "547"; repStart "-3943"; chr5 rmsk exon 140628287 140628416 730 - . gene_id "MER41_5q31.3a"; transcript_id "MER41_5q31.3a"; locus "MER41_5q31.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0193"; repClass "LTR"; repEnd "246"; repFamily "ERV1"; repLeft "114"; repStart "-388"; ### MER41_5q31.3b ### chr5 rmsk gene 140744065 140745704 . - . gene_id "MER41_5q31.3b"; transcript_id "MER41_5q31.3b"; locus "MER41_5q31.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0194"; model_cov "803"; model_pct "13.5"; chr5 rmsk exon 140744065 140744601 3787 - . gene_id "MER41_5q31.3b"; transcript_id "MER41_5q31.3b"; locus "MER41_5q31.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0194"; repClass "LTR"; repEnd "544"; repFamily "ERV1"; repLeft "1"; repStart "-90"; chr5 rmsk exon 140744929 140745704 5043 - . gene_id "MER41_5q31.3b"; transcript_id "MER41_5q31.3b"; locus "MER41_5q31.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0194"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "5138"; repStart "-5"; ### HERVL_5q31.3a ### chr5 rmsk gene 140905775 140910008 . - . gene_id "HERVL_5q31.3a"; transcript_id "HERVL_5q31.3a"; locus "HERVL_5q31.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0558"; model_cov "3822"; model_pct "67.6"; chr5 rmsk exon 140905775 140906220 3393 - . gene_id "HERVL_5q31.3a"; transcript_id "HERVL_5q31.3a"; locus "HERVL_5q31.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0558"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 140906221 140910008 43088 - . gene_id "HERVL_5q31.3a"; transcript_id "HERVL_5q31.3a"; locus "HERVL_5q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0558"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1832"; repStart "0"; ### HERVL_5q31.3b ### chr5 rmsk gene 140910078 140912336 . - . gene_id "HERVL_5q31.3b"; transcript_id "HERVL_5q31.3b"; locus "HERVL_5q31.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0559"; model_cov "1830"; model_pct "32.4"; chr5 rmsk exon 140910078 140911890 43088 - . gene_id "HERVL_5q31.3b"; transcript_id "HERVL_5q31.3b"; locus "HERVL_5q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0559"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3824"; repStart "0"; chr5 rmsk exon 140911891 140912336 3373 - . gene_id "HERVL_5q31.3b"; transcript_id "HERVL_5q31.3b"; locus "HERVL_5q31.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0559"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5q31.3a ### chr5 rmsk gene 141264023 141265504 . - . gene_id "ERVLE_5q31.3a"; transcript_id "ERVLE_5q31.3a"; locus "ERVLE_5q31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1510"; model_cov "1177"; model_pct "20.8"; chr5 rmsk exon 141264023 141264371 746 - . gene_id "ERVLE_5q31.3a"; transcript_id "ERVLE_5q31.3a"; locus "ERVLE_5q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1510"; repClass "LTR"; repEnd "1200"; repFamily "ERVL"; repLeft "854"; repStart "-4467"; chr5 rmsk exon 141264684 141265504 746 - . gene_id "ERVLE_5q31.3a"; transcript_id "ERVLE_5q31.3a"; locus "ERVLE_5q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1510"; repClass "LTR"; repEnd "853"; repFamily "ERVL"; repLeft "22"; repStart "-4814"; ### ERVLE_5q31.3b ### chr5 rmsk gene 141266733 141269951 . + . gene_id "ERVLE_5q31.3b"; transcript_id "ERVLE_5q31.3b"; locus "ERVLE_5q31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1511"; model_cov "1778"; model_pct "31.4"; chr5 rmsk exon 141266733 141267784 2093 + . gene_id "ERVLE_5q31.3b"; transcript_id "ERVLE_5q31.3b"; locus "ERVLE_5q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1511"; repClass "LTR"; repEnd "1104"; repFamily "ERVL"; repLeft "-4563"; repStart "-42"; chr5 rmsk exon 141269021 141269517 1844 + . gene_id "ERVLE_5q31.3b"; transcript_id "ERVLE_5q31.3b"; locus "ERVLE_5q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1511"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "-2577"; repStart "2603"; chr5 rmsk exon 141269810 141269951 1844 + . gene_id "ERVLE_5q31.3b"; transcript_id "ERVLE_5q31.3b"; locus "ERVLE_5q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1511"; repClass "LTR"; repEnd "3236"; repFamily "ERVL"; repLeft "-2431"; repStart "3091"; ### ERV316A3_5q31.3a ### chr5 rmsk gene 141272549 141274064 . + . gene_id "ERV316A3_5q31.3a"; transcript_id "ERV316A3_5q31.3a"; locus "ERV316A3_5q31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1132"; model_cov "1163"; model_pct "22.3"; chr5 rmsk exon 141272549 141272968 1508 + . gene_id "ERV316A3_5q31.3a"; transcript_id "ERV316A3_5q31.3a"; locus "ERV316A3_5q31.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1132"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "3"; chr5 rmsk exon 141272980 141274064 3401 + . gene_id "ERV316A3_5q31.3a"; transcript_id "ERV316A3_5q31.3a"; locus "ERV316A3_5q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1132"; repClass "LTR"; repEnd "1395"; repFamily "ERVL"; repLeft "-3831"; repStart "232"; ### ERV316A3_5q31.3b ### chr5 rmsk gene 141275576 141280667 . + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1134"; model_cov "2989"; model_pct "57.2"; chr5 rmsk exon 141275576 141275638 285 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "1294"; repFamily "ERVL"; repLeft "-3932"; repStart "1232"; chr5 rmsk exon 141275908 141276038 285 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "1418"; repFamily "ERVL"; repLeft "-3808"; repStart "1295"; chr5 rmsk exon 141276189 141277452 4262 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "3105"; repFamily "ERVL"; repLeft "-2121"; repStart "1894"; chr5 rmsk exon 141277862 141278739 4572 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "4003"; repFamily "ERVL"; repLeft "-1223"; repStart "3103"; chr5 rmsk exon 141279253 141279942 2917 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4533"; chr5 rmsk exon 141279957 141280143 732 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "-233"; repStart "16"; chr5 rmsk exon 141280429 141280667 732 + . gene_id "ERV316A3_5q31.3b"; transcript_id "ERV316A3_5q31.3b"; locus "ERV316A3_5q31.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1134"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "219"; ### ERVLE_5q31.3c ### chr5 rmsk gene 141280670 141282711 . + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1512"; model_cov "1042"; model_pct "18.4"; chr5 rmsk exon 141280670 141280809 1744 + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1512"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "-2294"; repStart "3236"; chr5 rmsk exon 141280941 141281345 1744 + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1512"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1897"; repStart "3374"; chr5 rmsk exon 141282076 141282310 1744 + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1512"; repClass "LTR"; repEnd "3998"; repFamily "ERVL"; repLeft "-1669"; repStart "3771"; chr5 rmsk exon 141282401 141282560 561 + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1512"; repClass "LTR"; repEnd "4172"; repFamily "ERVL"; repLeft "-1495"; repStart "3997"; chr5 rmsk exon 141282606 141282711 473 + . gene_id "ERVLE_5q31.3c"; transcript_id "ERVLE_5q31.3c"; locus "ERVLE_5q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1512"; repClass "LTR"; repEnd "4367"; repFamily "ERVL"; repLeft "-1300"; repStart "4260"; ### ERVLE_5q31.3d ### chr5 rmsk gene 141290142 141293463 . + . gene_id "ERVLE_5q31.3d"; transcript_id "ERVLE_5q31.3d"; locus "ERVLE_5q31.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1514"; model_cov "3065"; model_pct "54.1"; chr5 rmsk exon 141290142 141291217 4577 + . gene_id "ERVLE_5q31.3d"; transcript_id "ERVLE_5q31.3d"; locus "ERVLE_5q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1514"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "-2380"; repStart "2155"; chr5 rmsk exon 141291626 141293463 4577 + . gene_id "ERVLE_5q31.3d"; transcript_id "ERVLE_5q31.3d"; locus "ERVLE_5q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1514"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-493"; repStart "3241"; ### HUERSP3B_5q31.3 ### chr5 rmsk gene 141455328 141458438 . - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0058"; model_cov "1710"; model_pct "23.1"; chr5 rmsk exon 141455328 141455856 3668 - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0058"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "28"; repStart "-83"; chr5 rmsk exon 141456175 141456201 3668 - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0058"; repClass "LTR"; repEnd "27"; repFamily "ERV1"; repLeft "2"; repStart "-617"; chr5 rmsk exon 141456203 141456682 12280 - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0058"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "6951"; repStart "-7"; chr5 rmsk exon 141456993 141458221 12280 - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0058"; repClass "LTR"; repEnd "6950"; repFamily "ERV1"; repLeft "5700"; repStart "-468"; chr5 rmsk exon 141458242 141458438 1295 - . gene_id "HUERSP3B_5q31.3"; transcript_id "HUERSP3B_5q31.3"; locus "HUERSP3B_5q31.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0058"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "445"; repStart "0"; ### ERVLE_5q31.3e ### chr5 rmsk gene 141689703 141691521 . - . gene_id "ERVLE_5q31.3e"; transcript_id "ERVLE_5q31.3e"; locus "ERVLE_5q31.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1515"; model_cov "1928"; model_pct "34.0"; chr5 rmsk exon 141689703 141690464 1404 - . gene_id "ERVLE_5q31.3e"; transcript_id "ERVLE_5q31.3e"; locus "ERVLE_5q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1515"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "4308"; repStart "-351"; chr5 rmsk exon 141690605 141691130 1242 - . gene_id "ERVLE_5q31.3e"; transcript_id "ERVLE_5q31.3e"; locus "ERVLE_5q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1515"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "3804"; repStart "-1317"; chr5 rmsk exon 141691163 141691521 852 - . gene_id "ERVLE_5q31.3e"; transcript_id "ERVLE_5q31.3e"; locus "ERVLE_5q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1515"; repClass "LTR"; repEnd "3907"; repFamily "ERVL"; repLeft "3533"; repStart "-1760"; ### ERV316A3_5q31.3c ### chr5 rmsk gene 142727807 142735305 . - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1135"; model_cov "4942"; model_pct "94.6"; chr5 rmsk exon 142727807 142728258 1844 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-26"; chr5 rmsk exon 142728259 142729376 3386 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4048"; repStart "0"; chr5 rmsk exon 142729998 142730571 2530 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "4060"; repFamily "ERVL"; repLeft "3409"; repStart "-1166"; chr5 rmsk exon 142730652 142731010 2530 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "3408"; repFamily "ERVL"; repLeft "3033"; repStart "-1818"; chr5 rmsk exon 142731008 142732169 7534 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "2756"; repFamily "ERVL"; repLeft "1617"; repStart "-2470"; chr5 rmsk exon 142732471 142733036 7534 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "1044"; repStart "-3610"; chr5 rmsk exon 142733607 142734329 7534 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "1043"; repFamily "ERVL"; repLeft "297"; repStart "-4183"; chr5 rmsk exon 142734635 142734948 7534 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "15"; repStart "-4930"; chr5 rmsk exon 142734949 142735305 1358 - . gene_id "ERV316A3_5q31.3c"; transcript_id "ERV316A3_5q31.3c"; locus "ERV316A3_5q31.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1135"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "57"; repStart "0"; ### HERVIP10FH_5q31.3 ### chr5 rmsk gene 143088591 143095011 . - . gene_id "HERVIP10FH_5q31.3"; transcript_id "HERVIP10FH_5q31.3"; locus "HERVIP10FH_5q31.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0058"; model_cov "5098"; model_pct "99.9"; chr5 rmsk exon 143088591 143089121 3616 - . gene_id "HERVIP10FH_5q31.3"; transcript_id "HERVIP10FH_5q31.3"; locus "HERVIP10FH_5q31.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0058"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 143089122 143092154 41149 - . gene_id "HERVIP10FH_5q31.3"; transcript_id "HERVIP10FH_5q31.3"; locus "HERVIP10FH_5q31.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0058"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "2034"; repStart "0"; chr5 rmsk exon 143092464 143094506 41149 - . gene_id "HERVIP10FH_5q31.3"; transcript_id "HERVIP10FH_5q31.3"; locus "HERVIP10FH_5q31.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0058"; repClass "LTR"; repEnd "2033"; repFamily "ERV1"; repLeft "3"; repStart "-3069"; chr5 rmsk exon 143094508 143095011 3689 - . gene_id "HERVIP10FH_5q31.3"; transcript_id "HERVIP10FH_5q31.3"; locus "HERVIP10FH_5q31.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0058"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_5q31.3a ### chr5 rmsk gene 143924996 143926207 . - . gene_id "HERVH_5q31.3a"; transcript_id "HERVH_5q31.3a"; locus "HERVH_5q31.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0520"; model_cov "845"; model_pct "11.0"; chr5 rmsk exon 143924996 143925371 2376 - . gene_id "HERVH_5q31.3a"; transcript_id "HERVH_5q31.3a"; locus "HERVH_5q31.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0520"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr5 rmsk exon 143925372 143925644 1692 - . gene_id "HERVH_5q31.3a"; transcript_id "HERVH_5q31.3a"; locus "HERVH_5q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0520"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7443"; repStart "0"; chr5 rmsk exon 143925643 143925823 1014 - . gene_id "HERVH_5q31.3a"; transcript_id "HERVH_5q31.3a"; locus "HERVH_5q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0520"; repClass "LTR"; repEnd "5760"; repFamily "ERV1"; repLeft "5588"; repStart "-1953"; chr5 rmsk exon 143925804 143926207 2493 - . gene_id "HERVH_5q31.3a"; transcript_id "HERVH_5q31.3a"; locus "HERVH_5q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0520"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4746"; repStart "-2564"; ### HERVH_5q31.3b ### chr5 rmsk gene 144611352 144616900 . - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0522"; model_cov "4598"; model_pct "59.6"; chr5 rmsk exon 144611352 144611759 2630 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 144611760 144612135 2338 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 144612136 144612344 1333 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 144612346 144612876 3776 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4618"; repStart "-2564"; chr5 rmsk exon 144612875 144613688 5635 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "3952"; repFamily "ERV1"; repLeft "3140"; repStart "-3761"; chr5 rmsk exon 144613668 144615971 12241 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "793"; repStart "-4718"; chr5 rmsk exon 144616047 144616488 2965 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chr5 rmsk exon 144616491 144616900 2607 - . gene_id "HERVH_5q31.3b"; transcript_id "HERVH_5q31.3b"; locus "HERVH_5q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0522"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5q31.3d ### chr5 rmsk gene 144840839 144843864 . - . gene_id "ERV316A3_5q31.3d"; transcript_id "ERV316A3_5q31.3d"; locus "ERV316A3_5q31.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1137"; model_cov "2321"; model_pct "44.4"; chr5 rmsk exon 144840839 144841041 431 - . gene_id "ERV316A3_5q31.3d"; transcript_id "ERV316A3_5q31.3d"; locus "ERV316A3_5q31.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1137"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "157"; repStart "-76"; chr5 rmsk exon 144841165 144842157 4170 - . gene_id "ERV316A3_5q31.3d"; transcript_id "ERV316A3_5q31.3d"; locus "ERV316A3_5q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1137"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "4244"; repStart "-9"; chr5 rmsk exon 144842474 144843064 4170 - . gene_id "ERV316A3_5q31.3d"; transcript_id "ERV316A3_5q31.3d"; locus "ERV316A3_5q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1137"; repClass "LTR"; repEnd "4243"; repFamily "ERVL"; repLeft "3634"; repStart "-983"; chr5 rmsk exon 144843151 144843864 4170 - . gene_id "ERV316A3_5q31.3d"; transcript_id "ERV316A3_5q31.3d"; locus "ERV316A3_5q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1137"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "2894"; repStart "-1593"; ### HERV9_5q31.3 ### chr5 rmsk gene 144846698 144851536 . - . gene_id "HERV9_5q31.3"; transcript_id "HERV9_5q31.3"; locus "HERV9_5q31.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0062"; model_cov "3545"; model_pct "42.0"; chr5 rmsk exon 144846698 144847149 3887 - . gene_id "HERV9_5q31.3"; transcript_id "HERV9_5q31.3"; locus "HERV9_5q31.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0062"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "375"; repStart "0"; chr5 rmsk exon 144847195 144848034 3887 - . gene_id "HERV9_5q31.3"; transcript_id "HERV9_5q31.3"; locus "HERV9_5q31.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0062"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "1"; repStart "-452"; chr5 rmsk exon 144848035 144851536 28378 - . gene_id "HERV9_5q31.3"; transcript_id "HERV9_5q31.3"; locus "HERV9_5q31.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0062"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "4891"; repStart "0"; ### ERVLE_5q31.3f ### chr5 rmsk gene 145067129 145070186 . + . gene_id "ERVLE_5q31.3f"; transcript_id "ERVLE_5q31.3f"; locus "ERVLE_5q31.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1520"; model_cov "3162"; model_pct "55.8"; chr5 rmsk exon 145067129 145069464 2843 + . gene_id "ERVLE_5q31.3f"; transcript_id "ERVLE_5q31.3f"; locus "ERVLE_5q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1520"; repClass "LTR"; repEnd "4181"; repFamily "ERVL"; repLeft "-1486"; repStart "1690"; chr5 rmsk exon 145069554 145070186 1435 + . gene_id "ERVLE_5q31.3f"; transcript_id "ERVLE_5q31.3f"; locus "ERVLE_5q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1520"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "-656"; repStart "4340"; ### HERVIP10FH_5q32 ### chr5 rmsk gene 147254447 147261673 . - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0059"; model_cov "5325"; model_pct "100.0"; chr5 rmsk exon 147254447 147254857 3107 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "72"; repStart "0"; chr5 rmsk exon 147255153 147255223 3107 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "71"; repFamily "ERV1"; repLeft "1"; repStart "-440"; chr5 rmsk exon 147255224 147256501 29389 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "3790"; repStart "0"; chr5 rmsk exon 147256812 147259543 29389 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "3789"; repFamily "ERV1"; repLeft "1034"; repStart "-1313"; chr5 rmsk exon 147259650 147259896 29389 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "1033"; repFamily "ERV1"; repLeft "783"; repStart "-4069"; chr5 rmsk exon 147260119 147261194 2259 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "1011"; repFamily "ERV1"; repLeft "3"; repStart "-4091"; chr5 rmsk exon 147261196 147261673 3205 - . gene_id "HERVIP10FH_5q32"; transcript_id "HERVIP10FH_5q32"; locus "HERVIP10FH_5q32"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0059"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_5q32 ### chr5 rmsk gene 147460752 147464826 . + . gene_id "ERV316A3_5q32"; transcript_id "ERV316A3_5q32"; locus "ERV316A3_5q32"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1138"; model_cov "3474"; model_pct "66.5"; chr5 rmsk exon 147460752 147460949 9055 + . gene_id "ERV316A3_5q32"; transcript_id "ERV316A3_5q32"; locus "ERV316A3_5q32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1138"; repClass "LTR"; repEnd "1742"; repFamily "ERVL"; repLeft "-3484"; repStart "1609"; chr5 rmsk exon 147461596 147464826 9055 + . gene_id "ERV316A3_5q32"; transcript_id "ERV316A3_5q32"; locus "ERV316A3_5q32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1138"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "1743"; ### MER41_5q32 ### chr5 rmsk gene 147724857 147729086 . + . gene_id "MER41_5q32"; transcript_id "MER41_5q32"; locus "MER41_5q32"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0195"; model_cov "3326"; model_pct "55.9"; chr5 rmsk exon 147724857 147725495 4291 + . gene_id "MER41_5q32"; transcript_id "MER41_5q32"; locus "MER41_5q32"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0195"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 147725498 147727329 19757 + . gene_id "MER41_5q32"; transcript_id "MER41_5q32"; locus "MER41_5q32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0195"; repClass "LTR"; repEnd "1936"; repFamily "ERV1"; repLeft "-4010"; repStart "3"; chr5 rmsk exon 147727673 147729086 19757 + . gene_id "MER41_5q32"; transcript_id "MER41_5q32"; locus "MER41_5q32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0195"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-2616"; repStart "1937"; ### ERVLE_5q32 ### chr5 rmsk gene 147805029 147808303 . - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1522"; model_cov "1760"; model_pct "31.1"; chr5 rmsk exon 147805029 147805266 785 - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1522"; repClass "LTR"; repEnd "5437"; repFamily "ERVL"; repLeft "5202"; repStart "-230"; chr5 rmsk exon 147805568 147805811 785 - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1522"; repClass "LTR"; repEnd "5213"; repFamily "ERVL"; repLeft "4947"; repStart "-454"; chr5 rmsk exon 147806003 147806128 391 - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1522"; repClass "LTR"; repEnd "4697"; repFamily "ERVL"; repLeft "4576"; repStart "-970"; chr5 rmsk exon 147806385 147806532 2952 - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1522"; repClass "LTR"; repEnd "4557"; repFamily "ERVL"; repLeft "4414"; repStart "-1110"; chr5 rmsk exon 147807346 147808303 2952 - . gene_id "ERVLE_5q32"; transcript_id "ERVLE_5q32"; locus "ERVLE_5q32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1522"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "3418"; repStart "-1254"; ### HERVH_5q32a ### chr5 rmsk gene 147864645 147869038 . + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0524"; model_cov "3956"; model_pct "51.3"; chr5 rmsk exon 147864645 147866703 13132 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "968"; chr5 rmsk exon 147866683 147866832 901 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr5 rmsk exon 147866823 147867324 3065 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr5 rmsk exon 147867327 147867990 3904 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr5 rmsk exon 147867992 147868209 1163 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr5 rmsk exon 147868203 147868587 2395 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7315"; chr5 rmsk exon 147868588 147869038 3511 + . gene_id "HERVH_5q32a"; transcript_id "HERVH_5q32a"; locus "HERVH_5q32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0524"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_5q32b ### chr5 rmsk gene 147869836 147874526 . - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0525"; model_cov "4039"; model_pct "52.4"; chr5 rmsk exon 147869836 147870286 3415 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 147870287 147870454 980 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7550"; repStart "0"; chr5 rmsk exon 147870447 147870675 1473 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "4719"; repFamily "ERV1"; repLeft "4488"; repStart "-2994"; chr5 rmsk exon 147870678 147871181 3125 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 147871172 147871319 856 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 147871299 147874075 12489 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr5 rmsk exon 147874078 147874526 3394 - . gene_id "HERVH_5q32b"; transcript_id "HERVH_5q32b"; locus "HERVH_5q32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0525"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_5q32 ### chr5 rmsk gene 148001641 148006661 . + . gene_id "MER61_5q32"; transcript_id "MER61_5q32"; locus "MER61_5q32"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0167"; model_cov "4678"; model_pct "89.7"; chr5 rmsk exon 148001641 148001971 1851 + . gene_id "MER61_5q32"; transcript_id "MER61_5q32"; locus "MER61_5q32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0167"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 148001972 148002698 3269 + . gene_id "MER61_5q32"; transcript_id "MER61_5q32"; locus "MER61_5q32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0167"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr5 rmsk exon 148002692 148006327 18675 + . gene_id "MER61_5q32"; transcript_id "MER61_5q32"; locus "MER61_5q32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0167"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "-1133"; repStart "182"; chr5 rmsk exon 148006328 148006661 1892 + . gene_id "MER61_5q32"; transcript_id "MER61_5q32"; locus "MER61_5q32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0167"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_5q33.1 ### chr5 rmsk gene 150833151 150837862 . - . gene_id "HERVIP10FH_5q33.1"; transcript_id "HERVIP10FH_5q33.1"; locus "HERVIP10FH_5q33.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0060"; model_cov "3641"; model_pct "71.4"; chr5 rmsk exon 150833151 150835873 6687 - . gene_id "HERVIP10FH_5q33.1"; transcript_id "HERVIP10FH_5q33.1"; locus "HERVIP10FH_5q33.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0060"; repClass "LTR"; repEnd "4827"; repFamily "ERV1"; repLeft "2041"; repStart "-275"; chr5 rmsk exon 150836418 150836641 3300 - . gene_id "HERVIP10FH_5q33.1"; transcript_id "HERVIP10FH_5q33.1"; locus "HERVIP10FH_5q33.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0060"; repClass "LTR"; repEnd "857"; repFamily "ERV1"; repLeft "667"; repStart "-4245"; chr5 rmsk exon 150836672 150837273 3300 - . gene_id "HERVIP10FH_5q33.1"; transcript_id "HERVIP10FH_5q33.1"; locus "HERVIP10FH_5q33.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0060"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "-4436"; chr5 rmsk exon 150837274 150837862 4561 - . gene_id "HERVIP10FH_5q33.1"; transcript_id "HERVIP10FH_5q33.1"; locus "HERVIP10FH_5q33.1"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0060"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_5q33.1a ### chr5 rmsk gene 150870228 150872215 . + . gene_id "MER4_5q33.1a"; transcript_id "MER4_5q33.1a"; locus "MER4_5q33.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0299"; model_cov "2028"; model_pct "30.7"; chr5 rmsk exon 150870228 150870306 544 + . gene_id "MER4_5q33.1a"; transcript_id "MER4_5q33.1a"; locus "MER4_5q33.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0299"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "394"; chr5 rmsk exon 150870310 150872215 6273 + . gene_id "MER4_5q33.1a"; transcript_id "MER4_5q33.1a"; locus "MER4_5q33.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0299"; repClass "LTR"; repEnd "2029"; repFamily "ERV1"; repLeft "-4569"; repStart "1"; ### HERVL_5q33.1a ### chr5 rmsk gene 150872210 150877598 . + . gene_id "HERVL_5q33.1a"; transcript_id "HERVL_5q33.1a"; locus "HERVL_5q33.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0560"; model_cov "5048"; model_pct "89.3"; chr5 rmsk exon 150872210 150877163 36141 + . gene_id "HERVL_5q33.1a"; transcript_id "HERVL_5q33.1a"; locus "HERVL_5q33.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0560"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "606"; chr5 rmsk exon 150877164 150877598 3082 + . gene_id "HERVL_5q33.1a"; transcript_id "HERVL_5q33.1a"; locus "HERVL_5q33.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0560"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HML5_5q33.1 ### chr5 rmsk gene 150914264 150916360 . - . gene_id "HML5_5q33.1"; transcript_id "HML5_5q33.1"; locus "HML5_5q33.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0042"; model_cov "1089"; model_pct "15.9"; chr5 rmsk exon 150914264 150914727 2264 - . gene_id "HML5_5q33.1"; transcript_id "HML5_5q33.1"; locus "HML5_5q33.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0042"; repClass "LTR"; repEnd "522"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chr5 rmsk exon 150914728 150915068 2499 - . gene_id "HML5_5q33.1"; transcript_id "HML5_5q33.1"; locus "HML5_5q33.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0042"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "6499"; repStart "0"; chr5 rmsk exon 150915142 150915891 5275 - . gene_id "HML5_5q33.1"; transcript_id "HML5_5q33.1"; locus "HML5_5q33.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0042"; repClass "LTR"; repEnd "752"; repFamily "ERVK"; repLeft "1"; repStart "-6085"; chr5 rmsk exon 150915892 150916360 2250 - . gene_id "HML5_5q33.1"; transcript_id "HML5_5q33.1"; locus "HML5_5q33.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0042"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_5q33.1b ### chr5 rmsk gene 150957659 150964107 . + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0300"; model_cov "6284"; model_pct "95.2"; chr5 rmsk exon 150957659 150957801 1044 + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0300"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-329"; repStart "1"; chr5 rmsk exon 150957822 150958932 10530 + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0300"; repClass "LTR"; repEnd "1467"; repFamily "ERV1"; repLeft "-5131"; repStart "169"; chr5 rmsk exon 150959248 150960256 10530 + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0300"; repClass "LTR"; repEnd "2636"; repFamily "ERV1"; repLeft "-3962"; repStart "1468"; chr5 rmsk exon 150960501 150961395 10530 + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0300"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "2637"; chr5 rmsk exon 150961396 150964107 15085 + . gene_id "MER4_5q33.1b"; transcript_id "MER4_5q33.1b"; locus "MER4_5q33.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0300"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3817"; ### LTR46_5q33.1 ### chr5 rmsk gene 150986467 150993656 . - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0004"; model_cov "5323"; model_pct "76.2"; chr5 rmsk exon 150986467 150986892 2552 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 150986893 150990479 24858 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "3411"; repStart "0"; chr5 rmsk exon 150991474 150991831 24858 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "3410"; repFamily "ERV1"; repLeft "3057"; repStart "-3575"; chr5 rmsk exon 150991830 150992196 2358 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "2285"; repFamily "ERV1"; repLeft "1910"; repStart "-4700"; chr5 rmsk exon 150992196 150992655 2582 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "1285"; repFamily "ERV1"; repLeft "823"; repStart "-5700"; chr5 rmsk exon 150992754 150993310 3475 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "1"; repStart "-6425"; chr5 rmsk exon 150993362 150993656 1622 - . gene_id "LTR46_5q33.1"; transcript_id "LTR46_5q33.1"; locus "LTR46_5q33.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0004"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "154"; repStart "0"; ### HERV4_5q33.1 ### chr5 rmsk gene 151245104 151251626 . - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0049"; model_cov "4844"; model_pct "74.1"; chr5 rmsk exon 151245104 151245371 2992 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "537"; repFamily "ERV1"; repLeft "247"; repStart "-97"; chr5 rmsk exon 151245662 151245853 2992 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "246"; repFamily "ERV1"; repLeft "2"; repStart "-388"; chr5 rmsk exon 151245854 151247486 12446 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "4884"; repStart "0"; chr5 rmsk exon 151247467 151249916 21472 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "3191"; repFamily "ERV1"; repLeft "647"; repStart "-3348"; chr5 rmsk exon 151250210 151251001 21472 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "646"; repFamily "ERV1"; repLeft "1"; repStart "-5893"; chr5 rmsk exon 151251002 151251626 3653 - . gene_id "HERV4_5q33.1"; transcript_id "HERV4_5q33.1"; locus "HERV4_5q33.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0049"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_5q33.1 ### chr5 rmsk gene 152504339 152506682 . - . gene_id "ERV316A3_5q33.1"; transcript_id "ERV316A3_5q33.1"; locus "ERV316A3_5q33.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1139"; model_cov "2172"; model_pct "41.6"; chr5 rmsk exon 152504339 152504558 359 - . gene_id "ERV316A3_5q33.1"; transcript_id "ERV316A3_5q33.1"; locus "ERV316A3_5q33.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1139"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2547"; repStart "-2469"; chr5 rmsk exon 152504829 152506682 1080 - . gene_id "ERV316A3_5q33.1"; transcript_id "ERV316A3_5q33.1"; locus "ERV316A3_5q33.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1139"; repClass "LTR"; repEnd "1900"; repFamily "ERVL"; repLeft "-62"; repStart "-3326"; ### HERVL_5q33.1b ### chr5 rmsk gene 152624006 152625743 . + . gene_id "HERVL_5q33.1b"; transcript_id "HERVL_5q33.1b"; locus "HERVL_5q33.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0561"; model_cov "892"; model_pct "15.8"; chr5 rmsk exon 152624006 152624448 3855 + . gene_id "HERVL_5q33.1b"; transcript_id "HERVL_5q33.1b"; locus "HERVL_5q33.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0561"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "-450"; repStart "4760"; chr5 rmsk exon 152624767 152624869 3855 + . gene_id "HERVL_5q33.1b"; transcript_id "HERVL_5q33.1b"; locus "HERVL_5q33.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0561"; repClass "LTR"; repEnd "5295"; repFamily "ERVL"; repLeft "-359"; repStart "5205"; chr5 rmsk exon 152625136 152625468 3855 + . gene_id "HERVL_5q33.1b"; transcript_id "HERVL_5q33.1b"; locus "HERVL_5q33.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0561"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5296"; chr5 rmsk exon 152625470 152625743 2057 + . gene_id "HERVL_5q33.1b"; transcript_id "HERVL_5q33.1b"; locus "HERVL_5q33.1b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0561"; repClass "LTR"; repEnd "236"; repFamily "ERVL"; repLeft "-318"; repStart "1"; ### HERVH_5q33.2 ### chr5 rmsk gene 153449687 153455430 . - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0526"; model_cov "4886"; model_pct "63.3"; chr5 rmsk exon 153449687 153450137 3485 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 153450138 153450512 2587 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr5 rmsk exon 153450511 153450714 1406 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5612"; repStart "-1894"; chr5 rmsk exon 153450737 153451396 4413 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4490"; repStart "-2564"; chr5 rmsk exon 153451401 153451896 3428 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr5 rmsk exon 153451896 153452043 875 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 153452038 153454964 20470 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 153454980 153455430 3486 - . gene_id "HERVH_5q33.2"; transcript_id "HERVH_5q33.2"; locus "HERVH_5q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0526"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_5q33.2 ### chr5 rmsk gene 153463637 153465626 . - . gene_id "MER41_5q33.2"; transcript_id "MER41_5q33.2"; locus "MER41_5q33.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0196"; model_cov "1345"; model_pct "22.6"; chr5 rmsk exon 153463637 153464137 3262 - . gene_id "MER41_5q33.2"; transcript_id "MER41_5q33.2"; locus "MER41_5q33.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0196"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-87"; chr5 rmsk exon 153464145 153465626 9106 - . gene_id "MER41_5q33.2"; transcript_id "MER41_5q33.2"; locus "MER41_5q33.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0196"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "4596"; repStart "-5"; ### HML2_5q33.2 ### chr5 rmsk gene 154635953 154644655 . - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0046"; model_cov "6623"; model_pct "87.9"; chr5 rmsk exon 154635953 154636977 7881 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "-30"; repStart "0"; chr5 rmsk exon 154636980 154640034 20165 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "4466"; repStart "-2"; chr5 rmsk exon 154640032 154642817 16400 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "3553"; repFamily "ERVK"; repLeft "743"; repStart "-3983"; chr5 rmsk exon 154642910 154643647 4615 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "1"; repStart "-6790"; chr5 rmsk exon 154643648 154644655 7899 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### ERV316A3_5q33.2a ### chr5 rmsk gene 155336711 155339111 . + . gene_id "ERV316A3_5q33.2a"; transcript_id "ERV316A3_5q33.2a"; locus "ERV316A3_5q33.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1140"; model_cov "2373"; model_pct "45.4"; chr5 rmsk exon 155336711 155339111 5317 + . gene_id "ERV316A3_5q33.2a"; transcript_id "ERV316A3_5q33.2a"; locus "ERV316A3_5q33.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1140"; repClass "LTR"; repEnd "3662"; repFamily "ERVL"; repLeft "-1564"; repStart "1289"; ### HUERSP2_5q33.2 ### chr5 rmsk gene 155677990 155680224 . + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0055"; model_cov "1690"; model_pct "54.7"; chr5 rmsk exon 155677990 155678129 508 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "-2953"; repStart "5"; chr5 rmsk exon 155678108 155678291 733 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "807"; repFamily "ERV1"; repLeft "-2281"; repStart "622"; chr5 rmsk exon 155678292 155678898 2948 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "1380"; repFamily "ERV1"; repLeft "-1708"; repStart "769"; chr5 rmsk exon 155678900 155679032 539 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "2639"; repFamily "ERV1"; repLeft "-449"; repStart "2468"; chr5 rmsk exon 155679027 155679574 2632 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2495"; chr5 rmsk exon 155679575 155680224 2473 + . gene_id "HUERSP2_5q33.2"; transcript_id "HUERSP2_5q33.2"; locus "HUERSP2_5q33.2"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0055"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "0"; repStart "11"; ### ERV316A3_5q33.2b ### chr5 rmsk gene 155692775 155695965 . - . gene_id "ERV316A3_5q33.2b"; transcript_id "ERV316A3_5q33.2b"; locus "ERV316A3_5q33.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1141"; model_cov "2179"; model_pct "41.7"; chr5 rmsk exon 155692775 155693023 390 - . gene_id "ERV316A3_5q33.2b"; transcript_id "ERV316A3_5q33.2b"; locus "ERV316A3_5q33.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1141"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "1"; repStart "-177"; chr5 rmsk exon 155693211 155693728 2230 - . gene_id "ERV316A3_5q33.2b"; transcript_id "ERV316A3_5q33.2b"; locus "ERV316A3_5q33.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1141"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "4461"; repStart "-204"; chr5 rmsk exon 155694103 155694757 2230 - . gene_id "ERV316A3_5q33.2b"; transcript_id "ERV316A3_5q33.2b"; locus "ERV316A3_5q33.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1141"; repClass "LTR"; repEnd "4460"; repFamily "ERVL"; repLeft "3787"; repStart "-766"; chr5 rmsk exon 155695073 155695965 2230 - . gene_id "ERV316A3_5q33.2b"; transcript_id "ERV316A3_5q33.2b"; locus "ERV316A3_5q33.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1141"; repClass "LTR"; repEnd "3786"; repFamily "ERVL"; repLeft "2841"; repStart "-1440"; ### ERVLE_5q33.2 ### chr5 rmsk gene 155696194 155700296 . + . gene_id "ERVLE_5q33.2"; transcript_id "ERVLE_5q33.2"; locus "ERVLE_5q33.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1523"; model_cov "4203"; model_pct "74.2"; chr5 rmsk exon 155696194 155700296 12052 + . gene_id "ERVLE_5q33.2"; transcript_id "ERVLE_5q33.2"; locus "ERVLE_5q33.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1523"; repClass "LTR"; repEnd "5587"; repFamily "ERVL"; repLeft "-80"; repStart "1384"; ### PABLB_5q33.2 ### chr5 rmsk gene 156086902 156094084 . - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0035"; model_cov "5247"; model_pct "73.7"; chr5 rmsk exon 156086902 156087357 1531 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "7035"; repFamily "ERV1"; repLeft "6591"; repStart "-87"; chr5 rmsk exon 156087662 156088479 1531 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "6590"; repFamily "ERV1"; repLeft "5730"; repStart "-532"; chr5 rmsk exon 156088893 156090262 1564 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "5459"; repFamily "ERV1"; repLeft "4112"; repStart "-1663"; chr5 rmsk exon 156091343 156092604 1564 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "4111"; repFamily "ERV1"; repLeft "2835"; repStart "-3011"; chr5 rmsk exon 156092655 156092810 290 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "2366"; repFamily "ERV1"; repLeft "2208"; repStart "-4756"; chr5 rmsk exon 156092924 156094084 1702 - . gene_id "PABLB_5q33.2"; transcript_id "PABLB_5q33.2"; locus "PABLB_5q33.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0035"; repClass "LTR"; repEnd "2087"; repFamily "ERV1"; repLeft "925"; repStart "-5035"; ### HML2_5q33.3 ### chr5 rmsk gene 156657706 156666885 . - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0047"; model_cov "7148"; model_pct "94.9"; chr5 rmsk exon 156657706 156658673 8851 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 156658769 156660384 14111 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr5 rmsk exon 156660384 156665917 47612 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr5 rmsk exon 156665918 156666885 8861 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### PABLA_5q33.3 ### chr5 rmsk gene 157655243 157658753 . + . gene_id "PABLA_5q33.3"; transcript_id "PABLA_5q33.3"; locus "PABLA_5q33.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0047"; model_cov "4011"; model_pct "80.0"; chr5 rmsk exon 157655243 157655754 2434 + . gene_id "PABLA_5q33.3"; transcript_id "PABLA_5q33.3"; locus "PABLA_5q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0047"; repClass "LTR"; repEnd "-311"; repFamily "ERV1"; repLeft "-5326"; repStart "-930"; chr5 rmsk exon 157655746 157658510 10114 + . gene_id "PABLA_5q33.3"; transcript_id "PABLA_5q33.3"; locus "PABLA_5q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0047"; repClass "LTR"; repEnd "4589"; repFamily "ERV1"; repLeft "-426"; repStart "1429"; chr5 rmsk exon 157658510 157658753 1499 + . gene_id "PABLA_5q33.3"; transcript_id "PABLA_5q33.3"; locus "PABLA_5q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0047"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-3"; repStart "4780"; ### MER41_5q33.3 ### chr5 rmsk gene 157695038 157699482 . + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0197"; model_cov "3952"; model_pct "66.5"; chr5 rmsk exon 157695038 157695284 2404 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0197"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "265"; chr5 rmsk exon 157695351 157695426 254 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "1"; chr5 rmsk exon 157695436 157696054 4180 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "1"; chr5 rmsk exon 157696043 157696456 2442 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "1723"; repFamily "ERV1"; repLeft "-4223"; repStart "1608"; chr5 rmsk exon 157696751 157696837 5173 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "2849"; repFamily "ERV1"; repLeft "-3097"; repStart "2774"; chr5 rmsk exon 157697127 157697863 5173 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "3580"; repFamily "ERV1"; repLeft "-2366"; repStart "2850"; chr5 rmsk exon 157698117 157699482 8619 + . gene_id "MER41_5q33.3"; transcript_id "MER41_5q33.3"; locus "MER41_5q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0197"; repClass "LTR"; repEnd "5348"; repFamily "ERV1"; repLeft "-598"; repStart "3049"; ### HUERSP3B_5q33.3 ### chr5 rmsk gene 157727177 157729573 . - . gene_id "HUERSP3B_5q33.3"; transcript_id "HUERSP3B_5q33.3"; locus "HUERSP3B_5q33.3"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0060"; model_cov "2209"; model_pct "29.8"; chr5 rmsk exon 157727177 157727750 12132 - . gene_id "HUERSP3B_5q33.3"; transcript_id "HUERSP3B_5q33.3"; locus "HUERSP3B_5q33.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0060"; repClass "LTR"; repEnd "6794"; repFamily "ERV1"; repLeft "6188"; repStart "-624"; chr5 rmsk exon 157728052 157729452 12132 - . gene_id "HUERSP3B_5q33.3"; transcript_id "HUERSP3B_5q33.3"; locus "HUERSP3B_5q33.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0060"; repClass "LTR"; repEnd "6187"; repFamily "ERV1"; repLeft "4713"; repStart "-1231"; chr5 rmsk exon 157729444 157729573 972 - . gene_id "HUERSP3B_5q33.3"; transcript_id "HUERSP3B_5q33.3"; locus "HUERSP3B_5q33.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0060"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "3745"; repStart "-3544"; ### HERVL_5q33.3 ### chr5 rmsk gene 159233488 159238427 . - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0562"; model_cov "3646"; model_pct "64.5"; chr5 rmsk exon 159233488 159233908 1050 - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0562"; repClass "LTR"; repEnd "544"; repFamily "ERVL"; repLeft "134"; repStart "-10"; chr5 rmsk exon 159233909 159234174 1965 - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0562"; repClass "LTR"; repEnd "3760"; repFamily "ERVL"; repLeft "3495"; repStart "-1894"; chr5 rmsk exon 159234175 159236408 23686 - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0562"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "1182"; repStart "-2270"; chr5 rmsk exon 159236720 159237888 23686 - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0562"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "2"; repStart "-4473"; chr5 rmsk exon 159237889 159238427 1940 - . gene_id "HERVL_5q33.3"; transcript_id "HERVL_5q33.3"; locus "HERVL_5q33.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0562"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### HARLEQUIN_5q33.3 ### chr5 rmsk gene 159366192 159373869 . + . gene_id "HARLEQUIN_5q33.3"; transcript_id "HARLEQUIN_5q33.3"; locus "HARLEQUIN_5q33.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0078"; model_cov "6895"; model_pct "100.0"; chr5 rmsk exon 159366192 159366641 3595 + . gene_id "HARLEQUIN_5q33.3"; transcript_id "HARLEQUIN_5q33.3"; locus "HARLEQUIN_5q33.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0078"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 159366642 159373414 44237 + . gene_id "HARLEQUIN_5q33.3"; transcript_id "HARLEQUIN_5q33.3"; locus "HARLEQUIN_5q33.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0078"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 159373415 159373869 3521 + . gene_id "HARLEQUIN_5q33.3"; transcript_id "HARLEQUIN_5q33.3"; locus "HARLEQUIN_5q33.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0078"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_5q33.3 ### chr5 rmsk gene 160380230 160387013 . + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1526"; model_cov "3298"; model_pct "58.2"; chr5 rmsk exon 160380230 160380414 394 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-5272"; repStart "202"; chr5 rmsk exon 160380541 160381024 1093 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "1194"; repFamily "ERVL"; repLeft "-4473"; repStart "606"; chr5 rmsk exon 160381032 160382418 2248 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "-1731"; repStart "2459"; chr5 rmsk exon 160384565 160384856 1158 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "4324"; repFamily "ERVL"; repLeft "-1343"; repStart "3978"; chr5 rmsk exon 160384871 160384934 1792 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "4444"; repFamily "ERVL"; repLeft "-1223"; repStart "4375"; chr5 rmsk exon 160385288 160385721 1792 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "4883"; repFamily "ERVL"; repLeft "-784"; repStart "4445"; chr5 rmsk exon 160386824 160387013 823 + . gene_id "ERVLE_5q33.3"; transcript_id "ERVLE_5q33.3"; locus "ERVLE_5q33.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1526"; repClass "LTR"; repEnd "5074"; repFamily "ERVL"; repLeft "-593"; repStart "4887"; ### HERVL18_5q34 ### chr5 rmsk gene 160932110 160938828 . - . gene_id "HERVL18_5q34"; transcript_id "HERVL18_5q34"; locus "HERVL18_5q34"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0064"; model_cov "6035"; model_pct "99.8"; chr5 rmsk exon 160932110 160932474 2354 - . gene_id "HERVL18_5q34"; transcript_id "HERVL18_5q34"; locus "HERVL18_5q34"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0064"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr5 rmsk exon 160932477 160938462 37797 - . gene_id "HERVL18_5q34"; transcript_id "HERVL18_5q34"; locus "HERVL18_5q34"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0064"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "12"; repStart "0"; chr5 rmsk exon 160938479 160938828 2279 - . gene_id "HERVL18_5q34"; transcript_id "HERVL18_5q34"; locus "HERVL18_5q34"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0064"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_5q34 ### chr5 rmsk gene 160979953 160984224 . + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0199"; model_cov "3099"; model_pct "52.1"; chr5 rmsk exon 160979953 160980497 4102 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0199"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 160980667 160981145 2162 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0199"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "-5326"; repStart "249"; chr5 rmsk exon 160981133 160981789 5069 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0199"; repClass "LTR"; repEnd "2025"; repFamily "ERV1"; repLeft "-3921"; repStart "894"; chr5 rmsk exon 160982094 160982646 5069 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0199"; repClass "LTR"; repEnd "3627"; repFamily "ERV1"; repLeft "-2319"; repStart "3087"; chr5 rmsk exon 160982645 160983676 7066 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0199"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4887"; chr5 rmsk exon 160983677 160984224 4173 + . gene_id "MER41_5q34"; transcript_id "MER41_5q34"; locus "MER41_5q34"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0199"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_5q34a ### chr5 rmsk gene 160990223 160999275 . + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0563"; model_cov "5663"; model_pct "100.0"; chr5 rmsk exon 160990223 160990659 3142 + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0563"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr5 rmsk exon 160990660 160995498 39725 + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0563"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "-795"; repStart "1"; chr5 rmsk exon 160995762 160996398 39725 + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0563"; repClass "LTR"; repEnd "5491"; repFamily "ERVL"; repLeft "-163"; repStart "4860"; chr5 rmsk exon 160998711 160998884 1217 + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0563"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5480"; chr5 rmsk exon 160998885 160999275 2623 + . gene_id "HERVL_5q34a"; transcript_id "HERVL_5q34a"; locus "HERVL_5q34a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0563"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-13"; repStart "1"; ### ERVL_5q34 ### chr5 rmsk gene 161054469 161061541 . - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0154"; model_cov "5720"; model_pct "99.4"; chr5 rmsk exon 161054469 161054485 536 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "530"; repStart "-8"; chr5 rmsk exon 161054533 161055066 1950 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-7"; repStart "-25"; chr5 rmsk exon 161055067 161055247 10251 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5570"; repStart "0"; chr5 rmsk exon 161055674 161057742 11955 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "5569"; repFamily "ERVL"; repLeft "3413"; repStart "-188"; chr5 rmsk exon 161057962 161060118 12745 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "1210"; repStart "-2331"; chr5 rmsk exon 161060276 161061097 4254 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "1218"; repFamily "ERVL"; repLeft "376"; repStart "-4539"; chr5 rmsk exon 161061222 161061541 1384 - . gene_id "ERVL_5q34"; transcript_id "ERVL_5q34"; locus "ERVL_5q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0154"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "45"; repStart "-5393"; ### HERVH_5q34a ### chr5 rmsk gene 161240264 161246200 . + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0527"; model_cov "5776"; model_pct "74.9"; chr5 rmsk exon 161240264 161240377 568 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-362"; repStart "1"; chr5 rmsk exon 161240378 161243513 18087 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr5 rmsk exon 161243504 161245212 7331 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4551"; chr5 rmsk exon 161245210 161245433 1328 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr5 rmsk exon 161245434 161245804 2189 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 161245805 161246200 2463 + . gene_id "HERVH_5q34a"; transcript_id "HERVH_5q34a"; locus "HERVH_5q34a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0527"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_5q34b ### chr5 rmsk gene 161248409 161255013 . + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0528"; model_cov "5759"; model_pct "74.7"; chr5 rmsk exon 161248409 161248819 2405 + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0528"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr5 rmsk exon 161248822 161254004 29479 + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0528"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "-2568"; repStart "1"; chr5 rmsk exon 161254002 161254229 1276 + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0528"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr5 rmsk exon 161254230 161254606 2199 + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0528"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr5 rmsk exon 161254607 161255013 2453 + . gene_id "HERVH_5q34b"; transcript_id "HERVH_5q34b"; locus "HERVH_5q34b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0528"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### HERVL_5q34b ### chr5 rmsk gene 162029523 162030822 . + . gene_id "HERVL_5q34b"; transcript_id "HERVL_5q34b"; locus "HERVL_5q34b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0564"; model_cov "831"; model_pct "14.7"; chr5 rmsk exon 162029523 162030368 6260 + . gene_id "HERVL_5q34b"; transcript_id "HERVL_5q34b"; locus "HERVL_5q34b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0564"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4823"; chr5 rmsk exon 162030369 162030822 2793 + . gene_id "HERVL_5q34b"; transcript_id "HERVL_5q34b"; locus "HERVL_5q34b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0564"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### ERVLB4_5q34a ### chr5 rmsk gene 162047458 162048316 . - . gene_id "ERVLB4_5q34a"; transcript_id "ERVLB4_5q34a"; locus "ERVLB4_5q34a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0670"; model_cov "918"; model_pct "16.1"; chr5 rmsk exon 162047458 162048017 1649 - . gene_id "ERVLB4_5q34a"; transcript_id "ERVLB4_5q34a"; locus "ERVLB4_5q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0670"; repClass "LTR"; repEnd "3238"; repFamily "ERVL"; repLeft "2622"; repStart "-2476"; chr5 rmsk exon 162048019 162048316 1332 - . gene_id "ERVLB4_5q34a"; transcript_id "ERVLB4_5q34a"; locus "ERVLB4_5q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0670"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "198"; repStart "-5214"; ### HERVH_5q34c ### chr5 rmsk gene 162275428 162281160 . - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0529"; model_cov "4909"; model_pct "63.6"; chr5 rmsk exon 162275428 162275839 2640 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 162275840 162276216 2234 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr5 rmsk exon 162276215 162276430 1325 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5601"; repStart "-1894"; chr5 rmsk exon 162276436 162277095 4480 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr5 rmsk exon 162277098 162277600 3485 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 162277591 162277738 888 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 162277725 162280748 20278 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr5 rmsk exon 162280751 162281160 2631 - . gene_id "HERVH_5q34c"; transcript_id "HERVH_5q34c"; locus "HERVH_5q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0529"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### LTR19_5q34 ### chr5 rmsk gene 162717489 162719264 . + . gene_id "LTR19_5q34"; transcript_id "LTR19_5q34"; locus "LTR19_5q34"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0017"; model_cov "998"; model_pct "17.9"; chr5 rmsk exon 162717489 162717780 2525 + . gene_id "LTR19_5q34"; transcript_id "LTR19_5q34"; locus "LTR19_5q34"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0017"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-146"; repStart "1"; chr5 rmsk exon 162718078 162718231 2525 + . gene_id "LTR19_5q34"; transcript_id "LTR19_5q34"; locus "LTR19_5q34"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0017"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-3"; repStart "341"; chr5 rmsk exon 162718243 162719264 6473 + . gene_id "LTR19_5q34"; transcript_id "LTR19_5q34"; locus "LTR19_5q34"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0017"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "-4587"; repStart "1"; ### MER34B_5q34 ### chr5 rmsk gene 163055779 163057034 . + . gene_id "MER34B_5q34"; transcript_id "MER34B_5q34"; locus "MER34B_5q34"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0112"; model_cov "757"; model_pct "14.1"; chr5 rmsk exon 163055779 163056283 1284 + . gene_id "MER34B_5q34"; transcript_id "MER34B_5q34"; locus "MER34B_5q34"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0112"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 163056316 163056722 867 + . gene_id "MER34B_5q34"; transcript_id "MER34B_5q34"; locus "MER34B_5q34"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0112"; repClass "LTR"; repEnd "-805"; repFamily "ERV1"; repLeft "-6161"; repStart "-1404"; chr5 rmsk exon 163056816 163057034 534 + . gene_id "MER34B_5q34"; transcript_id "MER34B_5q34"; locus "MER34B_5q34"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0112"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "-4704"; repStart "494"; ### ERV316A3_5q34a ### chr5 rmsk gene 163229546 163231206 . - . gene_id "ERV316A3_5q34a"; transcript_id "ERV316A3_5q34a"; locus "ERV316A3_5q34a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1142"; model_cov "1304"; model_pct "25.0"; chr5 rmsk exon 163229546 163229978 1397 - . gene_id "ERV316A3_5q34a"; transcript_id "ERV316A3_5q34a"; locus "ERV316A3_5q34a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1142"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "7"; repStart "-3"; chr5 rmsk exon 163229983 163231206 2234 - . gene_id "ERV316A3_5q34a"; transcript_id "ERV316A3_5q34a"; locus "ERV316A3_5q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1142"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3922"; repStart "0"; ### HARLEQUIN_5q34a ### chr5 rmsk gene 163313040 163314543 . - . gene_id "HARLEQUIN_5q34a"; transcript_id "HARLEQUIN_5q34a"; locus "HARLEQUIN_5q34a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0079"; model_cov "1067"; model_pct "15.5"; chr5 rmsk exon 163313040 163313521 4100 - . gene_id "HARLEQUIN_5q34a"; transcript_id "HARLEQUIN_5q34a"; locus "HARLEQUIN_5q34a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0079"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 163313522 163314543 20394 - . gene_id "HARLEQUIN_5q34a"; transcript_id "HARLEQUIN_5q34a"; locus "HARLEQUIN_5q34a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0079"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5829"; repStart "0"; ### HARLEQUIN_5q34b ### chr5 rmsk gene 163314691 163319478 . - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0080"; model_cov "4488"; model_pct "65.1"; chr5 rmsk exon 163314691 163317059 20394 - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0080"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "4420"; repStart "0"; chr5 rmsk exon 163317059 163318043 6435 - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0080"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr5 rmsk exon 163318037 163318670 4358 - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0080"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "262"; repStart "-6003"; chr5 rmsk exon 163318666 163319043 2522 - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0080"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr5 rmsk exon 163319044 163319478 3680 - . gene_id "HARLEQUIN_5q34b"; transcript_id "HARLEQUIN_5q34b"; locus "HARLEQUIN_5q34b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0080"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "48"; repStart "0"; ### HERVH_5q34d ### chr5 rmsk gene 163334360 163340585 . + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0530"; model_cov "6070"; model_pct "78.7"; chr5 rmsk exon 163334360 163334733 2281 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr5 rmsk exon 163334734 163337766 16023 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "-4375"; repStart "1"; chr5 rmsk exon 163337767 163338771 5228 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "6201"; repFamily "ERV1"; repLeft "-1512"; repStart "4932"; chr5 rmsk exon 163338771 163339660 5810 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5108"; chr5 rmsk exon 163339654 163340222 3851 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr5 rmsk exon 163340223 163340585 2076 + . gene_id "HERVH_5q34d"; transcript_id "HERVH_5q34d"; locus "HERVH_5q34d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0530"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_5q34b ### chr5 rmsk gene 163492467 163497378 . - . gene_id "ERVLB4_5q34b"; transcript_id "ERVLB4_5q34b"; locus "ERVLB4_5q34b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0672"; model_cov "3791"; model_pct "66.3"; chr5 rmsk exon 163492467 163494873 21112 - . gene_id "ERVLB4_5q34b"; transcript_id "ERVLB4_5q34b"; locus "ERVLB4_5q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0672"; repClass "LTR"; repEnd "3794"; repFamily "ERVL"; repLeft "1279"; repStart "-1920"; chr5 rmsk exon 163495132 163496077 21112 - . gene_id "ERVLB4_5q34b"; transcript_id "ERVLB4_5q34b"; locus "ERVLB4_5q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0672"; repClass "LTR"; repEnd "1278"; repFamily "ERVL"; repLeft "282"; repStart "-4436"; chr5 rmsk exon 163496680 163496950 21112 - . gene_id "ERVLB4_5q34b"; transcript_id "ERVLB4_5q34b"; locus "ERVLB4_5q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0672"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "1"; repStart "-5433"; chr5 rmsk exon 163496951 163497378 1417 - . gene_id "ERVLB4_5q34b"; transcript_id "ERVLB4_5q34b"; locus "ERVLB4_5q34b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0672"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_5q34c ### chr5 rmsk gene 163684855 163685963 . - . gene_id "ERVLB4_5q34c"; transcript_id "ERVLB4_5q34c"; locus "ERVLB4_5q34c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0673"; model_cov "694"; model_pct "12.1"; chr5 rmsk exon 163684855 163685269 1418 - . gene_id "ERVLB4_5q34c"; transcript_id "ERVLB4_5q34c"; locus "ERVLB4_5q34c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0673"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "38"; repStart "-9"; chr5 rmsk exon 163685292 163685963 3529 - . gene_id "ERVLB4_5q34c"; transcript_id "ERVLB4_5q34c"; locus "ERVLB4_5q34c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0673"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "5014"; repStart "-6"; ### HERVL_5q34c ### chr5 rmsk gene 164827238 164831132 . + . gene_id "HERVL_5q34c"; transcript_id "HERVL_5q34c"; locus "HERVL_5q34c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0565"; model_cov "2924"; model_pct "51.7"; chr5 rmsk exon 164827238 164827687 2780 + . gene_id "HERVL_5q34c"; transcript_id "HERVL_5q34c"; locus "HERVL_5q34c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0565"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr5 rmsk exon 164827688 164829608 15132 + . gene_id "HERVL_5q34c"; transcript_id "HERVL_5q34c"; locus "HERVL_5q34c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0565"; repClass "LTR"; repEnd "1905"; repFamily "ERVL"; repLeft "-3749"; repStart "1"; chr5 rmsk exon 164829615 164830631 8049 + . gene_id "HERVL_5q34c"; transcript_id "HERVL_5q34c"; locus "HERVL_5q34c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0565"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4634"; chr5 rmsk exon 164830632 164831132 2734 + . gene_id "HERVL_5q34c"; transcript_id "HERVL_5q34c"; locus "HERVL_5q34c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0565"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-8"; ### LTR25_5q34 ### chr5 rmsk gene 164968815 164973617 . - . gene_id "LTR25_5q34"; transcript_id "LTR25_5q34"; locus "LTR25_5q34"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0047"; model_cov "6577"; model_pct "91.5"; chr5 rmsk exon 164968815 164968958 18757 - . gene_id "LTR25_5q34"; transcript_id "LTR25_5q34"; locus "LTR25_5q34"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0047"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "7052"; repStart "-1"; chr5 rmsk exon 164969250 164973617 18757 - . gene_id "LTR25_5q34"; transcript_id "LTR25_5q34"; locus "LTR25_5q34"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0047"; repClass "LTR"; repEnd "7051"; repFamily "ERV1"; repLeft "609"; repStart "-137"; ### ERVLB4_5q34d ### chr5 rmsk gene 165240383 165243009 . - . gene_id "ERVLB4_5q34d"; transcript_id "ERVLB4_5q34d"; locus "ERVLB4_5q34d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0674"; model_cov "1634"; model_pct "28.6"; chr5 rmsk exon 165240383 165240999 2022 - . gene_id "ERVLB4_5q34d"; transcript_id "ERVLB4_5q34d"; locus "ERVLB4_5q34d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0674"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr5 rmsk exon 165241001 165242560 5579 - . gene_id "ERVLB4_5q34d"; transcript_id "ERVLB4_5q34d"; locus "ERVLB4_5q34d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0674"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "4078"; repStart "-2"; chr5 rmsk exon 165242561 165243009 1588 - . gene_id "ERVLB4_5q34d"; transcript_id "ERVLB4_5q34d"; locus "ERVLB4_5q34d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0674"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "5"; repStart "-165"; ### ERVLE_5q34a ### chr5 rmsk gene 165638116 165639177 . - . gene_id "ERVLE_5q34a"; transcript_id "ERVLE_5q34a"; locus "ERVLE_5q34a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1528"; model_cov "813"; model_pct "14.3"; chr5 rmsk exon 165638116 165638424 295 - . gene_id "ERVLE_5q34a"; transcript_id "ERVLE_5q34a"; locus "ERVLE_5q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1528"; repClass "LTR"; repEnd "1403"; repFamily "ERVL"; repLeft "1003"; repStart "-4264"; chr5 rmsk exon 165638778 165639177 850 - . gene_id "ERVLE_5q34a"; transcript_id "ERVLE_5q34a"; locus "ERVLE_5q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1528"; repClass "LTR"; repEnd "691"; repFamily "ERVL"; repLeft "278"; repStart "-4976"; ### HERV9_5q34 ### chr5 rmsk gene 166128456 166130714 . - . gene_id "HERV9_5q34"; transcript_id "HERV9_5q34"; locus "HERV9_5q34"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0064"; model_cov "2846"; model_pct "33.7"; chr5 rmsk exon 166128456 166130444 3489 - . gene_id "HERV9_5q34"; transcript_id "HERV9_5q34"; locus "HERV9_5q34"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0064"; repClass "LTR"; repEnd "8020"; repFamily "ERV1"; repLeft "5360"; repStart "-416"; chr5 rmsk exon 166130446 166130714 641 - . gene_id "HERV9_5q34"; transcript_id "HERV9_5q34"; locus "HERV9_5q34"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0064"; repClass "LTR"; repEnd "8001"; repFamily "ERV1"; repLeft "7815"; repStart "-435"; ### HERVFH21_5q34 ### chr5 rmsk gene 166130808 166136205 . - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0013"; model_cov "5188"; model_pct "79.5"; chr5 rmsk exon 166130808 166134994 14684 - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0013"; repClass "LTR"; repEnd "5357"; repFamily "ERV1"; repLeft "1198"; repStart "-1172"; chr5 rmsk exon 166134988 166135725 2107 - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0013"; repClass "LTR"; repEnd "-242"; repFamily "ERV1"; repLeft "-1149"; repStart "-6771"; chr5 rmsk exon 166135710 166135845 383 - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0013"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "1"; repStart "-6406"; chr5 rmsk exon 166135846 166136010 815 - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0013"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "31"; repStart "0"; chr5 rmsk exon 166136011 166136205 430 - . gene_id "HERVFH21_5q34"; transcript_id "HERVFH21_5q34"; locus "HERVFH21_5q34"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0013"; repClass "LTR"; repEnd "241"; repFamily "ERVL"; repLeft "32"; repStart "-270"; ### ERVLE_5q34b ### chr5 rmsk gene 166578553 166581164 . - . gene_id "ERVLE_5q34b"; transcript_id "ERVLE_5q34b"; locus "ERVLE_5q34b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1529"; model_cov "2077"; model_pct "36.7"; chr5 rmsk exon 166578553 166579055 1230 - . gene_id "ERVLE_5q34b"; transcript_id "ERVLE_5q34b"; locus "ERVLE_5q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1529"; repClass "LTR"; repEnd "2132"; repFamily "ERVL"; repLeft "1606"; repStart "-3535"; chr5 rmsk exon 166579360 166579399 1230 - . gene_id "ERVLE_5q34b"; transcript_id "ERVLE_5q34b"; locus "ERVLE_5q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1529"; repClass "LTR"; repEnd "1605"; repFamily "ERVL"; repLeft "1573"; repStart "-4062"; chr5 rmsk exon 166579600 166580128 1977 - . gene_id "ERVLE_5q34b"; transcript_id "ERVLE_5q34b"; locus "ERVLE_5q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1529"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "973"; repStart "-4095"; chr5 rmsk exon 166580258 166581164 1977 - . gene_id "ERVLE_5q34b"; transcript_id "ERVLE_5q34b"; locus "ERVLE_5q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1529"; repClass "LTR"; repEnd "972"; repFamily "ERVL"; repLeft "52"; repStart "-4695"; ### HERVH_5q34e ### chr5 rmsk gene 166740058 166744650 . - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0531"; model_cov "4005"; model_pct "51.9"; chr5 rmsk exon 166740058 166740448 2308 - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0531"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr5 rmsk exon 166740449 166740874 2279 - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0531"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7277"; repStart "0"; chr5 rmsk exon 166740885 166741431 3542 - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0531"; repClass "LTR"; repEnd "3715"; repFamily "ERV1"; repLeft "3140"; repStart "-3998"; chr5 rmsk exon 166741411 166744248 14492 - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0531"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr5 rmsk exon 166744251 166744650 2573 - . gene_id "HERVH_5q34e"; transcript_id "HERVH_5q34e"; locus "HERVH_5q34e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0531"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_5q34f ### chr5 rmsk gene 167297631 167303678 . - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0532"; model_cov "4905"; model_pct "63.6"; chr5 rmsk exon 167297631 167298042 2825 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 167298043 167298321 2201 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7431"; repStart "0"; chr5 rmsk exon 167298628 167298735 2201 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "7430"; repFamily "ERV1"; repLeft "7324"; repStart "-283"; chr5 rmsk exon 167298736 167298951 1238 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr5 rmsk exon 167298953 167299617 4162 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr5 rmsk exon 167299620 167300122 3224 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 167300113 167300260 838 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 167300255 167303268 18682 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 167303271 167303678 2680 - . gene_id "HERVH_5q34f"; transcript_id "HERVH_5q34f"; locus "HERVH_5q34f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0532"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_5q34b ### chr5 rmsk gene 168605545 168606894 . - . gene_id "ERV316A3_5q34b"; transcript_id "ERV316A3_5q34b"; locus "ERV316A3_5q34b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1143"; model_cov "815"; model_pct "15.6"; chr5 rmsk exon 168605545 168605901 1233 - . gene_id "ERV316A3_5q34b"; transcript_id "ERV316A3_5q34b"; locus "ERV316A3_5q34b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1143"; repClass "LTR"; repEnd "362"; repFamily "ERVL"; repLeft "1"; repStart "-94"; chr5 rmsk exon 168606116 168606894 2069 - . gene_id "ERV316A3_5q34b"; transcript_id "ERV316A3_5q34b"; locus "ERV316A3_5q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1143"; repClass "LTR"; repEnd "4986"; repFamily "ERVL"; repLeft "4171"; repStart "-240"; ### HERVL_5q35.1 ### chr5 rmsk gene 169444070 169446842 . + . gene_id "HERVL_5q35.1"; transcript_id "HERVL_5q35.1"; locus "HERVL_5q35.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0566"; model_cov "2198"; model_pct "38.9"; chr5 rmsk exon 169444070 169444113 271 + . gene_id "HERVL_5q35.1"; transcript_id "HERVL_5q35.1"; locus "HERVL_5q35.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0566"; repClass "LTR"; repEnd "-220"; repFamily "ERVL"; repLeft "-673"; repStart "-263"; chr5 rmsk exon 169444114 169445655 11622 + . gene_id "HERVL_5q35.1"; transcript_id "HERVL_5q35.1"; locus "HERVL_5q35.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0566"; repClass "LTR"; repEnd "4306"; repFamily "ERVL"; repLeft "-1348"; repStart "2760"; chr5 rmsk exon 169445646 169446295 4281 + . gene_id "HERVL_5q35.1"; transcript_id "HERVL_5q35.1"; locus "HERVL_5q35.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0566"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5002"; chr5 rmsk exon 169446296 169446842 1883 + . gene_id "HERVL_5q35.1"; transcript_id "HERVL_5q35.1"; locus "HERVL_5q35.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0566"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLE_5q35.1a ### chr5 rmsk gene 170087506 170094095 . - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1530"; model_cov "4067"; model_pct "71.8"; chr5 rmsk exon 170087506 170087958 2218 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "5572"; repFamily "ERVL"; repLeft "5065"; repStart "-95"; chr5 rmsk exon 170088419 170089486 2218 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "5064"; repFamily "ERVL"; repLeft "3992"; repStart "-603"; chr5 rmsk exon 170089534 170090192 2464 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "3561"; repFamily "ERVL"; repLeft "2870"; repStart "-2106"; chr5 rmsk exon 170090494 170091130 2464 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "2869"; repFamily "ERVL"; repLeft "2222"; repStart "-2798"; chr5 rmsk exon 170091245 170091905 661 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "2353"; repFamily "ERVL"; repLeft "1710"; repStart "-3314"; chr5 rmsk exon 170092401 170092781 661 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1316"; repStart "-3958"; chr5 rmsk exon 170093984 170094095 279 - . gene_id "ERVLE_5q35.1a"; transcript_id "ERVLE_5q35.1a"; locus "ERVLE_5q35.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1530"; repClass "LTR"; repEnd "807"; repFamily "ERVL"; repLeft "693"; repStart "-4860"; ### HERVH_5q35.1a ### chr5 rmsk gene 170762081 170767864 . - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0534"; model_cov "4906"; model_pct "63.6"; chr5 rmsk exon 170762081 170762491 2801 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 170762492 170762862 2471 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr5 rmsk exon 170762863 170763081 1364 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr5 rmsk exon 170763082 170763737 3255 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr5 rmsk exon 170763740 170764242 3531 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr5 rmsk exon 170764233 170764380 871 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 170764375 170767453 16413 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr5 rmsk exon 170767456 170767864 2638 - . gene_id "HERVH_5q35.1a"; transcript_id "HERVH_5q35.1a"; locus "HERVH_5q35.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0534"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_5q35.1b ### chr5 rmsk gene 171000577 171008846 . - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0535"; model_cov "5729"; model_pct "74.3"; chr5 rmsk exon 171000577 171001035 3631 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 171001036 171001471 2567 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7277"; repStart "0"; chr5 rmsk exon 171001489 171005144 14289 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1482"; repStart "-2564"; chr5 rmsk exon 171006763 171007913 3682 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "2871"; repFamily "ERV1"; repLeft "1703"; repStart "-4842"; chr5 rmsk exon 171007991 171008413 1157 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr5 rmsk exon 171008414 171008846 3376 - . gene_id "HERVH_5q35.1b"; transcript_id "HERVH_5q35.1b"; locus "HERVH_5q35.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0535"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_5q35.1 ### chr5 rmsk gene 171054228 171057279 . - . gene_id "MER41_5q35.1"; transcript_id "MER41_5q35.1"; locus "MER41_5q35.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0201"; model_cov "2497"; model_pct "42.0"; chr5 rmsk exon 171054228 171054775 3838 - . gene_id "MER41_5q35.1"; transcript_id "MER41_5q35.1"; locus "MER41_5q35.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0201"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "2"; repStart "-86"; chr5 rmsk exon 171054777 171057279 15984 - . gene_id "MER41_5q35.1"; transcript_id "MER41_5q35.1"; locus "MER41_5q35.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0201"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3449"; repStart "0"; ### ERVLE_5q35.1b ### chr5 rmsk gene 171354413 171355749 . - . gene_id "ERVLE_5q35.1b"; transcript_id "ERVLE_5q35.1b"; locus "ERVLE_5q35.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1531"; model_cov "1042"; model_pct "18.4"; chr5 rmsk exon 171354413 171355015 4919 - . gene_id "ERVLE_5q35.1b"; transcript_id "ERVLE_5q35.1b"; locus "ERVLE_5q35.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1531"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "2497"; repStart "-2570"; chr5 rmsk exon 171355316 171355749 4919 - . gene_id "ERVLE_5q35.1b"; transcript_id "ERVLE_5q35.1b"; locus "ERVLE_5q35.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1531"; repClass "LTR"; repEnd "2496"; repFamily "ERVL"; repLeft "2054"; repStart "-3171"; ### ERV316A3_5q35.1a ### chr5 rmsk gene 171356741 171358489 . + . gene_id "ERV316A3_5q35.1a"; transcript_id "ERV316A3_5q35.1a"; locus "ERV316A3_5q35.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1144"; model_cov "1370"; model_pct "26.2"; chr5 rmsk exon 171356741 171357110 668 + . gene_id "ERV316A3_5q35.1a"; transcript_id "ERV316A3_5q35.1a"; locus "ERV316A3_5q35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1144"; repClass "LTR"; repEnd "1070"; repFamily "ERVL"; repLeft "-4156"; repStart "691"; chr5 rmsk exon 171357384 171357528 314 + . gene_id "ERV316A3_5q35.1a"; transcript_id "ERV316A3_5q35.1a"; locus "ERV316A3_5q35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1144"; repClass "LTR"; repEnd "1565"; repFamily "ERVL"; repLeft "-3661"; repStart "1416"; chr5 rmsk exon 171357521 171357657 298 + . gene_id "ERV316A3_5q35.1a"; transcript_id "ERV316A3_5q35.1a"; locus "ERV316A3_5q35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1144"; repClass "LTR"; repEnd "1127"; repFamily "ERVL"; repLeft "-4099"; repStart "989"; chr5 rmsk exon 171357682 171358489 1349 + . gene_id "ERV316A3_5q35.1a"; transcript_id "ERV316A3_5q35.1a"; locus "ERV316A3_5q35.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1144"; repClass "LTR"; repEnd "3452"; repFamily "ERVL"; repLeft "-1774"; repStart "2748"; ### ERV316A3_5q35.1b ### chr5 rmsk gene 171506316 171507219 . - . gene_id "ERV316A3_5q35.1b"; transcript_id "ERV316A3_5q35.1b"; locus "ERV316A3_5q35.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1146"; model_cov "752"; model_pct "14.4"; chr5 rmsk exon 171506316 171506771 1647 - . gene_id "ERV316A3_5q35.1b"; transcript_id "ERV316A3_5q35.1b"; locus "ERV316A3_5q35.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1146"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "2570"; repStart "-2204"; chr5 rmsk exon 171506922 171507219 839 - . gene_id "ERV316A3_5q35.1b"; transcript_id "ERV316A3_5q35.1b"; locus "ERV316A3_5q35.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1146"; repClass "LTR"; repEnd "2563"; repFamily "ERVL"; repLeft "2263"; repStart "-2663"; ### MER34B_5q35.1 ### chr5 rmsk gene 172296577 172300853 . - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0113"; model_cov "2101"; model_pct "39.2"; chr5 rmsk exon 172296577 172296724 758 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "4001"; repFamily "ERV1"; repLeft "3851"; repStart "-1355"; chr5 rmsk exon 172297110 172297342 1701 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "3881"; repFamily "ERV1"; repLeft "3682"; repStart "-1475"; chr5 rmsk exon 172297658 172297804 1701 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3560"; repStart "-1675"; chr5 rmsk exon 172298117 172298744 1967 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "3559"; repFamily "ERV1"; repLeft "3015"; repStart "-1797"; chr5 rmsk exon 172299346 172299465 1967 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "3014"; repFamily "ERV1"; repLeft "2910"; repStart "-2342"; chr5 rmsk exon 172299460 172300059 1983 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "3530"; repFamily "ERV1"; repLeft "2952"; repStart "-1826"; chr5 rmsk exon 172300171 172300210 1246 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "2127"; repFamily "ERV1"; repLeft "2091"; repStart "-3229"; chr5 rmsk exon 172300502 172300853 1246 - . gene_id "MER34B_5q35.1"; transcript_id "MER34B_5q35.1"; locus "MER34B_5q35.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0113"; repClass "LTR"; repEnd "2090"; repFamily "ERV1"; repLeft "1721"; repStart "-3266"; ### HERVK11_5q35.1 ### chr5 rmsk gene 172396989 172402672 . + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0038"; model_cov "4071"; model_pct "51.2"; chr5 rmsk exon 172396989 172397681 4200 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "549"; chr5 rmsk exon 172397682 172397746 489 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "64"; repFamily "ERVK"; repLeft "-7889"; repStart "1"; chr5 rmsk exon 172397742 172398396 11017 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "3573"; repFamily "ERVK"; repLeft "-4380"; repStart "2888"; chr5 rmsk exon 172398463 172399441 11017 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "3574"; chr5 rmsk exon 172399433 172400623 9060 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "5467"; chr5 rmsk exon 172400609 172401604 8146 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr5 rmsk exon 172401605 172402672 7196 + . gene_id "HERVK11_5q35.1"; transcript_id "HERVK11_5q35.1"; locus "HERVK11_5q35.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0038"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### HERVIP10FH_5q35.1 ### chr5 rmsk gene 172650610 172656348 . - . gene_id "HERVIP10FH_5q35.1"; transcript_id "HERVIP10FH_5q35.1"; locus "HERVIP10FH_5q35.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0061"; model_cov "7731"; model_pct "100.0"; chr5 rmsk exon 172650610 172651153 2938 - . gene_id "HERVIP10FH_5q35.1"; transcript_id "HERVIP10FH_5q35.1"; locus "HERVIP10FH_5q35.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0061"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 172651155 172655895 19198 - . gene_id "HERVIP10FH_5q35.1"; transcript_id "HERVIP10FH_5q35.1"; locus "HERVIP10FH_5q35.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0061"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "-2634"; repStart "-5"; chr5 rmsk exon 172655896 172656348 2548 - . gene_id "HERVIP10FH_5q35.1"; transcript_id "HERVIP10FH_5q35.1"; locus "HERVIP10FH_5q35.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0061"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "75"; repStart "0"; ### ERV316A3_5q35.2a ### chr5 rmsk gene 174006800 174009108 . + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1149"; model_cov "1304"; model_pct "25.0"; chr5 rmsk exon 174006800 174007054 765 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "276"; repFamily "ERVL"; repLeft "-186"; repStart "1"; chr5 rmsk exon 174007055 174007253 642 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "2110"; repFamily "ERVL"; repLeft "-3116"; repStart "1925"; chr5 rmsk exon 174007339 174007559 1323 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "2483"; repFamily "ERVL"; repLeft "-2743"; repStart "2253"; chr5 rmsk exon 174007860 174008094 1323 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "2702"; repFamily "ERVL"; repLeft "-2524"; repStart "2484"; chr5 rmsk exon 174008105 174008550 1939 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "3108"; repFamily "ERVL"; repLeft "-2118"; repStart "2678"; chr5 rmsk exon 174008852 174009108 1939 + . gene_id "ERV316A3_5q35.2a"; transcript_id "ERV316A3_5q35.2a"; locus "ERV316A3_5q35.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1149"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "-1876"; repStart "3109"; ### MER4_5q35.2a ### chr5 rmsk gene 174472059 174472887 . - . gene_id "MER4_5q35.2a"; transcript_id "MER4_5q35.2a"; locus "MER4_5q35.2a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0301"; model_cov "659"; model_pct "10.0"; chr5 rmsk exon 174472059 174472887 2913 - . gene_id "MER4_5q35.2a"; transcript_id "MER4_5q35.2a"; locus "MER4_5q35.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0301"; repClass "LTR"; repEnd "3439"; repFamily "ERV1"; repLeft "2780"; repStart "-3159"; ### ERVLE_5q35.2 ### chr5 rmsk gene 174853163 174857212 . + . gene_id "ERVLE_5q35.2"; transcript_id "ERVLE_5q35.2"; locus "ERVLE_5q35.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1532"; model_cov "3303"; model_pct "58.3"; chr5 rmsk exon 174853163 174854554 12459 + . gene_id "ERVLE_5q35.2"; transcript_id "ERVLE_5q35.2"; locus "ERVLE_5q35.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1532"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "-3209"; repStart "999"; chr5 rmsk exon 174854867 174855549 12459 + . gene_id "ERVLE_5q35.2"; transcript_id "ERVLE_5q35.2"; locus "ERVLE_5q35.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1532"; repClass "LTR"; repEnd "3175"; repFamily "ERVL"; repLeft "-2492"; repStart "2459"; chr5 rmsk exon 174855708 174856405 12459 + . gene_id "ERVLE_5q35.2"; transcript_id "ERVLE_5q35.2"; locus "ERVLE_5q35.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1532"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "-1758"; repStart "3176"; chr5 rmsk exon 174856834 174857212 12459 + . gene_id "ERVLE_5q35.2"; transcript_id "ERVLE_5q35.2"; locus "ERVLE_5q35.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1532"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-1362"; repStart "3910"; ### MER41_5q35.2 ### chr5 rmsk gene 174892005 174894316 . + . gene_id "MER41_5q35.2"; transcript_id "MER41_5q35.2"; locus "MER41_5q35.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0202"; model_cov "1999"; model_pct "33.6"; chr5 rmsk exon 174892005 174893159 6192 + . gene_id "MER41_5q35.2"; transcript_id "MER41_5q35.2"; locus "MER41_5q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0202"; repClass "LTR"; repEnd "882"; repFamily "ERV1"; repLeft "-5064"; repStart "-316"; chr5 rmsk exon 174893452 174894316 6192 + . gene_id "MER41_5q35.2"; transcript_id "MER41_5q35.2"; locus "MER41_5q35.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0202"; repClass "LTR"; repEnd "1858"; repFamily "ERV1"; repLeft "-4088"; repStart "1057"; ### MER101_5q35.2a ### chr5 rmsk gene 175065166 175066051 . + . gene_id "MER101_5q35.2a"; transcript_id "MER101_5q35.2a"; locus "MER101_5q35.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0165"; model_cov "774"; model_pct "11.7"; chr5 rmsk exon 175065166 175065468 571 + . gene_id "MER101_5q35.2a"; transcript_id "MER101_5q35.2a"; locus "MER101_5q35.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0165"; repClass "LTR"; repEnd "2058"; repFamily "ERV1"; repLeft "-4581"; repStart "1861"; chr5 rmsk exon 175065468 175066051 1775 + . gene_id "MER101_5q35.2a"; transcript_id "MER101_5q35.2a"; locus "MER101_5q35.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0165"; repClass "LTR"; repEnd "3589"; repFamily "ERV1"; repLeft "-3050"; repStart "3012"; ### MER101_5q35.2b ### chr5 rmsk gene 175075920 175077628 . + . gene_id "MER101_5q35.2b"; transcript_id "MER101_5q35.2b"; locus "MER101_5q35.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0166"; model_cov "2464"; model_pct "37.1"; chr5 rmsk exon 175075920 175075967 287 + . gene_id "MER101_5q35.2b"; transcript_id "MER101_5q35.2b"; locus "MER101_5q35.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0166"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4282"; repStart "2310"; chr5 rmsk exon 175076080 175077628 4690 + . gene_id "MER101_5q35.2b"; transcript_id "MER101_5q35.2b"; locus "MER101_5q35.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0166"; repClass "LTR"; repEnd "5205"; repFamily "ERV1"; repLeft "-1434"; repStart "2788"; ### MER101_5q35.2c ### chr5 rmsk gene 175077892 175078491 . + . gene_id "MER101_5q35.2c"; transcript_id "MER101_5q35.2c"; locus "MER101_5q35.2c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0167"; model_cov "1006"; model_pct "15.2"; chr5 rmsk exon 175077892 175078025 2461 + . gene_id "MER101_5q35.2c"; transcript_id "MER101_5q35.2c"; locus "MER101_5q35.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0167"; repClass "LTR"; repEnd "3854"; repFamily "ERV1"; repLeft "-2785"; repStart "3607"; chr5 rmsk exon 175078085 175078491 2461 + . gene_id "MER101_5q35.2c"; transcript_id "MER101_5q35.2c"; locus "MER101_5q35.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0167"; repClass "LTR"; repEnd "4614"; repFamily "ERV1"; repLeft "-2025"; repStart "3855"; ### MER4B_5q35.2 ### chr5 rmsk gene 175107278 175108665 . - . gene_id "MER4B_5q35.2"; transcript_id "MER4B_5q35.2"; locus "MER4B_5q35.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0182"; model_cov "1031"; model_pct "15.3"; chr5 rmsk exon 175107278 175107975 1644 - . gene_id "MER4B_5q35.2"; transcript_id "MER4B_5q35.2"; locus "MER4B_5q35.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0182"; repClass "LTR"; repEnd "5242"; repFamily "ERV1"; repLeft "4581"; repStart "-1516"; chr5 rmsk exon 175108307 175108665 1179 - . gene_id "MER4B_5q35.2"; transcript_id "MER4B_5q35.2"; locus "MER4B_5q35.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0182"; repClass "LTR"; repEnd "4533"; repFamily "ERV1"; repLeft "4163"; repStart "-2225"; ### HERVL18_5q35.2 ### chr5 rmsk gene 175363480 175364722 . + . gene_id "HERVL18_5q35.2"; transcript_id "HERVL18_5q35.2"; locus "HERVL18_5q35.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0065"; model_cov "651"; model_pct "10.8"; chr5 rmsk exon 175363480 175363740 1272 + . gene_id "HERVL18_5q35.2"; transcript_id "HERVL18_5q35.2"; locus "HERVL18_5q35.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0065"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-13"; repStart "73"; chr5 rmsk exon 175363748 175363993 1504 + . gene_id "HERVL18_5q35.2"; transcript_id "HERVL18_5q35.2"; locus "HERVL18_5q35.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0065"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "-5800"; repStart "1"; chr5 rmsk exon 175363994 175364398 2634 + . gene_id "HERVL18_5q35.2"; transcript_id "HERVL18_5q35.2"; locus "HERVL18_5q35.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0065"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5642"; chr5 rmsk exon 175364400 175364722 1278 + . gene_id "HERVL18_5q35.2"; transcript_id "HERVL18_5q35.2"; locus "HERVL18_5q35.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0065"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "-10"; repStart "1"; ### MER34B_5q35.2 ### chr5 rmsk gene 175559617 175565066 . + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0115"; model_cov "2600"; model_pct "48.5"; chr5 rmsk exon 175559617 175559649 531 + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0115"; repClass "LTR"; repEnd "1606"; repFamily "ERV1"; repLeft "-3750"; repStart "1583"; chr5 rmsk exon 175560392 175560594 531 + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0115"; repClass "LTR"; repEnd "1828"; repFamily "ERV1"; repLeft "-3528"; repStart "1607"; chr5 rmsk exon 175562048 175563135 1478 + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0115"; repClass "LTR"; repEnd "2928"; repFamily "ERV1"; repLeft "-2428"; repStart "1346"; chr5 rmsk exon 175563722 175563856 1702 + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0115"; repClass "LTR"; repEnd "3052"; repFamily "ERV1"; repLeft "-2304"; repStart "2929"; chr5 rmsk exon 175564472 175565066 1702 + . gene_id "MER34B_5q35.2"; transcript_id "MER34B_5q35.2"; locus "MER34B_5q35.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0115"; repClass "LTR"; repEnd "3711"; repFamily "ERV1"; repLeft "-1645"; repStart "3060"; ### ERV316A3_5q35.2b ### chr5 rmsk gene 175901724 175907757 . + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1150"; model_cov "4107"; model_pct "78.6"; chr5 rmsk exon 175901724 175902160 1609 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "4"; chr5 rmsk exon 175902161 175902642 2998 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "774"; repFamily "ERVL"; repLeft "-4452"; repStart "231"; chr5 rmsk exon 175903004 175903711 2998 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "-3724"; repStart "775"; chr5 rmsk exon 175904186 175905019 3693 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "-2878"; repStart "1413"; chr5 rmsk exon 175905308 175906360 3693 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "-1783"; repStart "2349"; chr5 rmsk exon 175906371 175907185 1972 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "4959"; repFamily "ERVL"; repLeft "-267"; repStart "4151"; chr5 rmsk exon 175907385 175907757 914 + . gene_id "ERV316A3_5q35.2b"; transcript_id "ERV316A3_5q35.2b"; locus "ERV316A3_5q35.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1150"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-25"; repStart "1"; ### PRIMA41_5q35.2 ### chr5 rmsk gene 176143001 176144373 . - . gene_id "PRIMA41_5q35.2"; transcript_id "PRIMA41_5q35.2"; locus "PRIMA41_5q35.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0064"; model_cov "997"; model_pct "12.9"; chr5 rmsk exon 176143001 176143413 1859 - . gene_id "PRIMA41_5q35.2"; transcript_id "PRIMA41_5q35.2"; locus "PRIMA41_5q35.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0064"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 176143414 176144373 5934 - . gene_id "PRIMA41_5q35.2"; transcript_id "PRIMA41_5q35.2"; locus "PRIMA41_5q35.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0064"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "6759"; repStart "0"; ### MER101_5q35.2d ### chr5 rmsk gene 176183849 176184617 . - . gene_id "MER101_5q35.2d"; transcript_id "MER101_5q35.2d"; locus "MER101_5q35.2d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0168"; model_cov "674"; model_pct "10.2"; chr5 rmsk exon 176183849 176184617 1633 - . gene_id "MER101_5q35.2d"; transcript_id "MER101_5q35.2d"; locus "MER101_5q35.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0168"; repClass "LTR"; repEnd "3168"; repFamily "ERV1"; repLeft "2494"; repStart "-3471"; ### MER101_5q35.2e ### chr5 rmsk gene 176254650 176256526 . - . gene_id "MER101_5q35.2e"; transcript_id "MER101_5q35.2e"; locus "MER101_5q35.2e"; category "internal"; intModel "MER101-int"; locid "MER101-int_0169"; model_cov "1006"; model_pct "15.2"; chr5 rmsk exon 176254650 176254994 1803 - . gene_id "MER101_5q35.2e"; transcript_id "MER101_5q35.2e"; locus "MER101_5q35.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0169"; repClass "LTR"; repEnd "4339"; repFamily "ERV1"; repLeft "4013"; repStart "-2300"; chr5 rmsk exon 176255257 176255298 1803 - . gene_id "MER101_5q35.2e"; transcript_id "MER101_5q35.2e"; locus "MER101_5q35.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0169"; repClass "LTR"; repEnd "4012"; repFamily "ERV1"; repLeft "3979"; repStart "-2627"; chr5 rmsk exon 176255762 176255959 904 - . gene_id "MER101_5q35.2e"; transcript_id "MER101_5q35.2e"; locus "MER101_5q35.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0169"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "2755"; repStart "-3683"; chr5 rmsk exon 176256089 176256526 1190 - . gene_id "MER101_5q35.2e"; transcript_id "MER101_5q35.2e"; locus "MER101_5q35.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0169"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "2319"; repStart "-3874"; ### MER4_5q35.2b ### chr5 rmsk gene 176424873 176428256 . - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0302"; model_cov "2768"; model_pct "42.0"; chr5 rmsk exon 176424873 176425470 12916 - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0302"; repClass "LTR"; repEnd "6143"; repFamily "ERV1"; repLeft "5524"; repStart "-455"; chr5 rmsk exon 176425768 176427272 12916 - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0302"; repClass "LTR"; repEnd "5523"; repFamily "ERV1"; repLeft "3964"; repStart "-1075"; chr5 rmsk exon 176427570 176427704 12916 - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0302"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "3837"; repStart "-2635"; chr5 rmsk exon 176427704 176428186 1971 - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0302"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3217"; repStart "-2917"; chr5 rmsk exon 176428243 176428256 1971 - . gene_id "MER4_5q35.2b"; transcript_id "MER4_5q35.2b"; locus "MER4_5q35.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0302"; repClass "LTR"; repEnd "3216"; repFamily "ERV1"; repLeft "3216"; repStart "-3382"; ### MER4_5q35.2c ### chr5 rmsk gene 176428554 176430591 . - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0303"; model_cov "1554"; model_pct "23.6"; chr5 rmsk exon 176428554 176428644 1971 - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0303"; repClass "LTR"; repEnd "3216"; repFamily "ERV1"; repLeft "3113"; repStart "-3382"; chr5 rmsk exon 176428933 176429126 1971 - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0303"; repClass "LTR"; repEnd "3112"; repFamily "ERV1"; repLeft "2942"; repStart "-3486"; chr5 rmsk exon 176429449 176429695 1243 - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0303"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "1764"; repStart "-4588"; chr5 rmsk exon 176429677 176429951 1526 - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0303"; repClass "LTR"; repEnd "1012"; repFamily "ERV1"; repLeft "626"; repStart "-5586"; chr5 rmsk exon 176429972 176430591 3778 - . gene_id "MER4_5q35.2c"; transcript_id "MER4_5q35.2c"; locus "MER4_5q35.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0303"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "37"; repStart "-5912"; ### MER4_5q35.2d ### chr5 rmsk gene 176430654 176432619 . - . gene_id "MER4_5q35.2d"; transcript_id "MER4_5q35.2d"; locus "MER4_5q35.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0304"; model_cov "1081"; model_pct "16.4"; chr5 rmsk exon 176430654 176430959 1281 - . gene_id "MER4_5q35.2d"; transcript_id "MER4_5q35.2d"; locus "MER4_5q35.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0304"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2112"; repStart "-4170"; chr5 rmsk exon 176431524 176431607 311 - . gene_id "MER4_5q35.2d"; transcript_id "MER4_5q35.2d"; locus "MER4_5q35.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0304"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-719"; repStart "-7237"; chr5 rmsk exon 176431598 176432146 2616 - . gene_id "MER4_5q35.2d"; transcript_id "MER4_5q35.2d"; locus "MER4_5q35.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0304"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr5 rmsk exon 176432151 176432619 3183 - . gene_id "MER4_5q35.2d"; transcript_id "MER4_5q35.2d"; locus "MER4_5q35.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0304"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_5q35.3a ### chr5 rmsk gene 177555408 177557987 . + . gene_id "ERVLE_5q35.3a"; transcript_id "ERVLE_5q35.3a"; locus "ERVLE_5q35.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1533"; model_cov "2044"; model_pct "36.1"; chr5 rmsk exon 177555408 177555930 2546 + . gene_id "ERVLE_5q35.3a"; transcript_id "ERVLE_5q35.3a"; locus "ERVLE_5q35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1533"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "-3065"; repStart "2060"; chr5 rmsk exon 177556234 177556575 2546 + . gene_id "ERVLE_5q35.3a"; transcript_id "ERVLE_5q35.3a"; locus "ERVLE_5q35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1533"; repClass "LTR"; repEnd "2940"; repFamily "ERVL"; repLeft "-2727"; repStart "2603"; chr5 rmsk exon 177556903 177557737 2546 + . gene_id "ERVLE_5q35.3a"; transcript_id "ERVLE_5q35.3a"; locus "ERVLE_5q35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1533"; repClass "LTR"; repEnd "3946"; repFamily "ERVL"; repLeft "-1721"; repStart "2941"; chr5 rmsk exon 177557834 177557987 338 + . gene_id "ERVLE_5q35.3a"; transcript_id "ERVLE_5q35.3a"; locus "ERVLE_5q35.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1533"; repClass "LTR"; repEnd "4264"; repFamily "ERVL"; repLeft "-1403"; repStart "4104"; ### MER101_5q35.3 ### chr5 rmsk gene 177655750 177657644 . + . gene_id "MER101_5q35.3"; transcript_id "MER101_5q35.3"; locus "MER101_5q35.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0170"; model_cov "1006"; model_pct "15.2"; chr5 rmsk exon 177655750 177656195 1253 + . gene_id "MER101_5q35.3"; transcript_id "MER101_5q35.3"; locus "MER101_5q35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0170"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "2319"; chr5 rmsk exon 177656325 177656522 896 + . gene_id "MER101_5q35.3"; transcript_id "MER101_5q35.3"; locus "MER101_5q35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0170"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "-3683"; repStart "2755"; chr5 rmsk exon 177656994 177657035 1864 + . gene_id "MER101_5q35.3"; transcript_id "MER101_5q35.3"; locus "MER101_5q35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0170"; repClass "LTR"; repEnd "4012"; repFamily "ERV1"; repLeft "-2627"; repStart "3979"; chr5 rmsk exon 177657299 177657644 1864 + . gene_id "MER101_5q35.3"; transcript_id "MER101_5q35.3"; locus "MER101_5q35.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0170"; repClass "LTR"; repEnd "4339"; repFamily "ERV1"; repLeft "-2300"; repStart "4013"; ### ERV316A3_5q35.3a ### chr5 rmsk gene 177931460 177936750 . - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1152"; model_cov "3711"; model_pct "71.0"; chr5 rmsk exon 177931460 177931831 604 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "1"; repStart "-25"; chr5 rmsk exon 177932031 177932845 2116 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "4959"; repFamily "ERVL"; repLeft "4092"; repStart "-267"; chr5 rmsk exon 177932856 177933903 3755 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "2349"; repStart "-1783"; chr5 rmsk exon 177934192 177934611 3755 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "1885"; repStart "-2878"; chr5 rmsk exon 177934630 177934961 784 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "2159"; repFamily "ERVL"; repLeft "1799"; repStart "-3067"; chr5 rmsk exon 177935499 177936208 2521 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "775"; repStart "-3724"; chr5 rmsk exon 177936568 177936750 2521 - . gene_id "ERV316A3_5q35.3a"; transcript_id "ERV316A3_5q35.3a"; locus "ERV316A3_5q35.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1152"; repClass "LTR"; repEnd "774"; repFamily "ERVL"; repLeft "574"; repStart "-4452"; ### ERV316A3_5q35.3b ### chr5 rmsk gene 178592506 178593413 . + . gene_id "ERV316A3_5q35.3b"; transcript_id "ERV316A3_5q35.3b"; locus "ERV316A3_5q35.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1153"; model_cov "971"; model_pct "18.6"; chr5 rmsk exon 178592506 178593413 3163 + . gene_id "ERV316A3_5q35.3b"; transcript_id "ERV316A3_5q35.3b"; locus "ERV316A3_5q35.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1153"; repClass "LTR"; repEnd "4948"; repFamily "ERVL"; repLeft "-278"; repStart "3977"; ### ERV316A3_5q35.3c ### chr5 rmsk gene 178640638 178641854 . - . gene_id "ERV316A3_5q35.3c"; transcript_id "ERV316A3_5q35.3c"; locus "ERV316A3_5q35.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1154"; model_cov "620"; model_pct "11.9"; chr5 rmsk exon 178640638 178640907 714 - . gene_id "ERV316A3_5q35.3c"; transcript_id "ERV316A3_5q35.3c"; locus "ERV316A3_5q35.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1154"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "1"; repStart "-148"; chr5 rmsk exon 178640940 178641234 1543 - . gene_id "ERV316A3_5q35.3c"; transcript_id "ERV316A3_5q35.3c"; locus "ERV316A3_5q35.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1154"; repClass "LTR"; repEnd "5179"; repFamily "ERVL"; repLeft "4869"; repStart "-47"; chr5 rmsk exon 178641536 178641854 1543 - . gene_id "ERV316A3_5q35.3c"; transcript_id "ERV316A3_5q35.3c"; locus "ERV316A3_5q35.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1154"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "4558"; repStart "-358"; ### ERVLB4_5q35.3a ### chr5 rmsk gene 178689467 178690079 . + . gene_id "ERVLB4_5q35.3a"; transcript_id "ERVLB4_5q35.3a"; locus "ERVLB4_5q35.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0676"; model_cov "618"; model_pct "10.8"; chr5 rmsk exon 178689467 178690079 3542 + . gene_id "ERVLB4_5q35.3a"; transcript_id "ERVLB4_5q35.3a"; locus "ERVLB4_5q35.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0676"; repClass "LTR"; repEnd "2658"; repFamily "ERVL"; repLeft "-3056"; repStart "2040"; ### ERVLE_5q35.3b ### chr5 rmsk gene 178761713 178762749 . + . gene_id "ERVLE_5q35.3b"; transcript_id "ERVLE_5q35.3b"; locus "ERVLE_5q35.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1534"; model_cov "682"; model_pct "12.0"; chr5 rmsk exon 178761713 178761831 415 + . gene_id "ERVLE_5q35.3b"; transcript_id "ERVLE_5q35.3b"; locus "ERVLE_5q35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1534"; repClass "LTR"; repEnd "689"; repFamily "ERVL"; repLeft "-4978"; repStart "568"; chr5 rmsk exon 178761972 178762510 1034 + . gene_id "ERVLE_5q35.3b"; transcript_id "ERVLE_5q35.3b"; locus "ERVLE_5q35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1534"; repClass "LTR"; repEnd "1354"; repFamily "ERVL"; repLeft "-4313"; repStart "850"; chr5 rmsk exon 178762692 178762749 329 + . gene_id "ERVLE_5q35.3b"; transcript_id "ERVLE_5q35.3b"; locus "ERVLE_5q35.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1534"; repClass "LTR"; repEnd "4492"; repFamily "ERVL"; repLeft "-1175"; repStart "4435"; ### ERVLB4_5q35.3b ### chr5 rmsk gene 179006598 179007490 . - . gene_id "ERVLB4_5q35.3b"; transcript_id "ERVLB4_5q35.3b"; locus "ERVLB4_5q35.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0677"; model_cov "595"; model_pct "10.4"; chr5 rmsk exon 179006598 179006931 1645 - . gene_id "ERVLB4_5q35.3b"; transcript_id "ERVLB4_5q35.3b"; locus "ERVLB4_5q35.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0677"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "3"; repStart "-57"; chr5 rmsk exon 179006940 179007490 2973 - . gene_id "ERVLB4_5q35.3b"; transcript_id "ERVLB4_5q35.3b"; locus "ERVLB4_5q35.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0677"; repClass "LTR"; repEnd "5703"; repFamily "ERVL"; repLeft "5108"; repStart "-11"; ### HERVEA_5q35.3 ### chr5 rmsk gene 179048516 179055098 . - . gene_id "HERVEA_5q35.3"; transcript_id "HERVEA_5q35.3"; locus "HERVEA_5q35.3"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0039"; model_cov "5443"; model_pct "69.4"; chr5 rmsk exon 179048516 179049006 3133 - . gene_id "HERVEA_5q35.3"; transcript_id "HERVEA_5q35.3"; locus "HERVEA_5q35.3"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0039"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr5 rmsk exon 179049007 179050098 8209 - . gene_id "HERVEA_5q35.3"; transcript_id "HERVEA_5q35.3"; locus "HERVEA_5q35.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0039"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "6760"; repStart "0"; chr5 rmsk exon 179050573 179053382 19546 - . gene_id "HERVEA_5q35.3"; transcript_id "HERVEA_5q35.3"; locus "HERVEA_5q35.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0039"; repClass "LTR"; repEnd "6209"; repFamily "ERV1"; repLeft "3375"; repStart "-1638"; chr5 rmsk exon 179053596 179055098 11034 - . gene_id "HERVEA_5q35.3"; transcript_id "HERVEA_5q35.3"; locus "HERVEA_5q35.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0039"; repClass "LTR"; repEnd "3390"; repFamily "ERV1"; repLeft "1868"; repStart "-4457"; ### ERVLE_5q35.3c ### chr5 rmsk gene 179668380 179669547 . - . gene_id "ERVLE_5q35.3c"; transcript_id "ERVLE_5q35.3c"; locus "ERVLE_5q35.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1535"; model_cov "772"; model_pct "13.6"; chr5 rmsk exon 179668380 179668708 525 - . gene_id "ERVLE_5q35.3c"; transcript_id "ERVLE_5q35.3c"; locus "ERVLE_5q35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1535"; repClass "LTR"; repEnd "1914"; repFamily "ERVL"; repLeft "1559"; repStart "-3753"; chr5 rmsk exon 179668996 179669275 600 - . gene_id "ERVLE_5q35.3c"; transcript_id "ERVLE_5q35.3c"; locus "ERVLE_5q35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1535"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "529"; repStart "-4857"; chr5 rmsk exon 179669410 179669547 600 - . gene_id "ERVLE_5q35.3c"; transcript_id "ERVLE_5q35.3c"; locus "ERVLE_5q35.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1535"; repClass "LTR"; repEnd "528"; repFamily "ERVL"; repLeft "392"; repStart "-5139"; ### ERV316A3_5q35.3d ### chr5 rmsk gene 180252125 180252731 . - . gene_id "ERV316A3_5q35.3d"; transcript_id "ERV316A3_5q35.3d"; locus "ERV316A3_5q35.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1157"; model_cov "601"; model_pct "11.5"; chr5 rmsk exon 180252125 180252731 1077 - . gene_id "ERV316A3_5q35.3d"; transcript_id "ERV316A3_5q35.3d"; locus "ERV316A3_5q35.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1157"; repClass "LTR"; repEnd "2521"; repFamily "ERVL"; repLeft "1920"; repStart "-2705"; ### HERVH_5q35.3 ### chr5 rmsk gene 180415688 180420511 . - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0537"; model_cov "3920"; model_pct "50.8"; chr5 rmsk exon 180415688 180416157 4214 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr5 rmsk exon 180416158 180416768 4570 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7106"; repStart "0"; chr5 rmsk exon 180416761 180416922 1032 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "3492"; repStart "-4061"; chr5 rmsk exon 180416913 180417062 925 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr5 rmsk exon 180417033 180420070 18988 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "1"; repStart "-4709"; chr5 rmsk exon 180420071 180420511 3871 - . gene_id "HERVH_5q35.3"; transcript_id "HERVH_5q35.3"; locus "HERVH_5q35.3"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0537"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_5q35.3a ### chr5 rmsk gene 180781518 180783272 . - . gene_id "MER4_5q35.3a"; transcript_id "MER4_5q35.3a"; locus "MER4_5q35.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0305"; model_cov "858"; model_pct "13.0"; chr5 rmsk exon 180781518 180781635 441 - . gene_id "MER4_5q35.3a"; transcript_id "MER4_5q35.3a"; locus "MER4_5q35.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0305"; repClass "LTR"; repEnd "-644"; repFamily "ERV1"; repLeft "-739"; repStart "-7242"; chr5 rmsk exon 180781604 180781870 2364 - . gene_id "MER4_5q35.3a"; transcript_id "MER4_5q35.3a"; locus "MER4_5q35.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0305"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "297"; repStart "-5912"; chr5 rmsk exon 180782333 180782680 2364 - . gene_id "MER4_5q35.3a"; transcript_id "MER4_5q35.3a"; locus "MER4_5q35.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0305"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "1"; repStart "-6223"; chr5 rmsk exon 180782681 180783272 2007 - . gene_id "MER4_5q35.3a"; transcript_id "MER4_5q35.3a"; locus "MER4_5q35.3a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0305"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_5q35.3c ### chr5 rmsk gene 180911856 180913898 . + . gene_id "ERVLB4_5q35.3c"; transcript_id "ERVLB4_5q35.3c"; locus "ERVLB4_5q35.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0679"; model_cov "1244"; model_pct "21.8"; chr5 rmsk exon 180911856 180912366 2036 + . gene_id "ERVLB4_5q35.3c"; transcript_id "ERVLB4_5q35.3c"; locus "ERVLB4_5q35.3c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0679"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "-54"; repStart "1"; chr5 rmsk exon 180912716 180913706 4524 + . gene_id "ERVLB4_5q35.3c"; transcript_id "ERVLB4_5q35.3c"; locus "ERVLB4_5q35.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0679"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "-4531"; repStart "141"; chr5 rmsk exon 180913702 180913898 1066 + . gene_id "ERVLB4_5q35.3c"; transcript_id "ERVLB4_5q35.3c"; locus "ERVLB4_5q35.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0679"; repClass "LTR"; repEnd "3369"; repFamily "ERVL"; repLeft "-2345"; repStart "3167"; ### LTR25_5q35.3 ### chr5 rmsk gene 180976911 180982172 . - . gene_id "LTR25_5q35.3"; transcript_id "LTR25_5q35.3"; locus "LTR25_5q35.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0048"; model_cov "8113"; model_pct "100.0"; chr5 rmsk exon 180976911 180977152 1118 - . gene_id "LTR25_5q35.3"; transcript_id "LTR25_5q35.3"; locus "LTR25_5q35.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0048"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6955"; repStart "-1"; chr5 rmsk exon 180977141 180978256 15867 - . gene_id "LTR25_5q35.3"; transcript_id "LTR25_5q35.3"; locus "LTR25_5q35.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0048"; repClass "LTR"; repEnd "6655"; repFamily "ERV1"; repLeft "4488"; repStart "-533"; chr5 rmsk exon 180978875 180981457 15867 - . gene_id "LTR25_5q35.3"; transcript_id "LTR25_5q35.3"; locus "LTR25_5q35.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0048"; repClass "LTR"; repEnd "6044"; repFamily "ERV1"; repLeft "1118"; repStart "-1144"; chr5 rmsk exon 180981434 180982172 3510 - . gene_id "LTR25_5q35.3"; transcript_id "LTR25_5q35.3"; locus "LTR25_5q35.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0048"; repClass "LTR"; repEnd "2523"; repFamily "ERV1"; repLeft "1735"; repStart "-4665"; ### MER4_5q35.3b ### chr5 rmsk gene 181143004 181147376 . + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0306"; model_cov "2804"; model_pct "42.5"; chr5 rmsk exon 181143004 181143459 3079 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0306"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr5 rmsk exon 181143464 181144035 2430 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0306"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr5 rmsk exon 181144531 181144723 600 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0306"; repClass "LTR"; repEnd "1442"; repFamily "ERV1"; repLeft "-5156"; repStart "1266"; chr5 rmsk exon 181144737 181145977 11291 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0306"; repClass "LTR"; repEnd "5911"; repFamily "ERV1"; repLeft "-687"; repStart "4625"; chr5 rmsk exon 181146312 181146944 11291 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0306"; repClass "LTR"; repEnd "6569"; repFamily "ERV1"; repLeft "-29"; repStart "5912"; chr5 rmsk exon 181146945 181147376 2944 + . gene_id "MER4_5q35.3b"; transcript_id "MER4_5q35.3b"; locus "MER4_5q35.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0306"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "18"; ### ERV316A3_6p25.3a ### chr6 rmsk gene 697674 699109 . + . gene_id "ERV316A3_6p25.3a"; transcript_id "ERV316A3_6p25.3a"; locus "ERV316A3_6p25.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1159"; model_cov "714"; model_pct "13.7"; chr6 rmsk exon 697674 697731 259 + . gene_id "ERV316A3_6p25.3a"; transcript_id "ERV316A3_6p25.3a"; locus "ERV316A3_6p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1159"; repClass "LTR"; repEnd "3962"; repFamily "ERVL"; repLeft "-1264"; repStart "3901"; chr6 rmsk exon 697827 698193 651 + . gene_id "ERV316A3_6p25.3a"; transcript_id "ERV316A3_6p25.3a"; locus "ERV316A3_6p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1159"; repClass "LTR"; repEnd "4484"; repFamily "ERVL"; repLeft "-742"; repStart "4139"; chr6 rmsk exon 698336 698633 840 + . gene_id "ERV316A3_6p25.3a"; transcript_id "ERV316A3_6p25.3a"; locus "ERV316A3_6p25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1159"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "4813"; chr6 rmsk exon 698795 699109 442 + . gene_id "ERV316A3_6p25.3a"; transcript_id "ERV316A3_6p25.3a"; locus "ERV316A3_6p25.3a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1159"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-10"; repStart "83"; ### ERVLE_6p25.3a ### chr6 rmsk gene 823102 823698 . + . gene_id "ERVLE_6p25.3a"; transcript_id "ERVLE_6p25.3a"; locus "ERVLE_6p25.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1540"; model_cov "638"; model_pct "11.3"; chr6 rmsk exon 823102 823698 1581 + . gene_id "ERVLE_6p25.3a"; transcript_id "ERVLE_6p25.3a"; locus "ERVLE_6p25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1540"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "-3239"; repStart "1790"; ### ERVLE_6p25.3b ### chr6 rmsk gene 829630 831653 . + . gene_id "ERVLE_6p25.3b"; transcript_id "ERVLE_6p25.3b"; locus "ERVLE_6p25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1542"; model_cov "871"; model_pct "15.4"; chr6 rmsk exon 829630 830336 1215 + . gene_id "ERVLE_6p25.3b"; transcript_id "ERVLE_6p25.3b"; locus "ERVLE_6p25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1542"; repClass "LTR"; repEnd "3588"; repFamily "ERVL"; repLeft "-2079"; repStart "2844"; chr6 rmsk exon 831537 831653 355 + . gene_id "ERVLE_6p25.3b"; transcript_id "ERVLE_6p25.3b"; locus "ERVLE_6p25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1542"; repClass "LTR"; repEnd "3886"; repFamily "ERVL"; repLeft "-1781"; repStart "3759"; ### HUERSP2_6p25.3 ### chr6 rmsk gene 920357 924946 . + . gene_id "HUERSP2_6p25.3"; transcript_id "HUERSP2_6p25.3"; locus "HUERSP2_6p25.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0056"; model_cov "2878"; model_pct "93.2"; chr6 rmsk exon 920357 921198 5414 + . gene_id "HUERSP2_6p25.3"; transcript_id "HUERSP2_6p25.3"; locus "HUERSP2_6p25.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0056"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 921339 924118 16148 + . gene_id "HUERSP2_6p25.3"; transcript_id "HUERSP2_6p25.3"; locus "HUERSP2_6p25.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0056"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "210"; chr6 rmsk exon 924119 924946 5331 + . gene_id "HUERSP2_6p25.3"; transcript_id "HUERSP2_6p25.3"; locus "HUERSP2_6p25.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0056"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6p25.3b ### chr6 rmsk gene 1020026 1024272 . - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1161"; model_cov "3191"; model_pct "61.1"; chr6 rmsk exon 1020026 1020341 572 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "3"; repStart "-102"; chr6 rmsk exon 1020382 1020780 1140 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "5178"; repFamily "ERVL"; repLeft "4751"; repStart "-48"; chr6 rmsk exon 1020775 1021447 3524 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "2970"; repFamily "ERVL"; repLeft "2069"; repStart "-2256"; chr6 rmsk exon 1021938 1023065 3524 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "2496"; repFamily "ERVL"; repLeft "1360"; repStart "-2730"; chr6 rmsk exon 1023163 1023375 662 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "946"; repFamily "ERVL"; repLeft "729"; repStart "-4280"; chr6 rmsk exon 1023528 1024025 848 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "743"; repFamily "ERVL"; repLeft "233"; repStart "-4483"; chr6 rmsk exon 1024030 1024272 401 - . gene_id "ERV316A3_6p25.3b"; transcript_id "ERV316A3_6p25.3b"; locus "ERV316A3_6p25.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1161"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "180"; repStart "-2"; ### HERVW_6p25.3 ### chr6 rmsk gene 1330047 1331614 . - . gene_id "HERVW_6p25.3"; transcript_id "HERVW_6p25.3"; locus "HERVW_6p25.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0129"; model_cov "1249"; model_pct "14.5"; chr6 rmsk exon 1330047 1330372 2823 - . gene_id "HERVW_6p25.3"; transcript_id "HERVW_6p25.3"; locus "HERVW_6p25.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0129"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr6 rmsk exon 1330374 1330931 4752 - . gene_id "HERVW_6p25.3"; transcript_id "HERVW_6p25.3"; locus "HERVW_6p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0129"; repClass "LTR"; repEnd "8625"; repFamily "ERV1"; repLeft "8068"; repStart "-1"; chr6 rmsk exon 1330923 1331614 5670 - . gene_id "HERVW_6p25.3"; transcript_id "HERVW_6p25.3"; locus "HERVW_6p25.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0129"; repClass "LTR"; repEnd "5322"; repFamily "ERV1"; repLeft "4630"; repStart "-3304"; ### ERVLE_6p25.3c ### chr6 rmsk gene 1551452 1553202 . + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1543"; model_cov "1111"; model_pct "19.6"; chr6 rmsk exon 1551452 1551535 342 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "2029"; repFamily "ERVL"; repLeft "-3638"; repStart "1945"; chr6 rmsk exon 1551606 1551777 1685 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "-3395"; repStart "2075"; chr6 rmsk exon 1552088 1552585 1685 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "-2854"; repStart "2226"; chr6 rmsk exon 1552621 1552697 390 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "-2396"; repStart "3193"; chr6 rmsk exon 1552744 1552805 390 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-2303"; repStart "3272"; chr6 rmsk exon 1553115 1553202 390 + . gene_id "ERVLE_6p25.3c"; transcript_id "ERVLE_6p25.3c"; locus "ERVLE_6p25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1543"; repClass "LTR"; repEnd "3438"; repFamily "ERVL"; repLeft "-2229"; repStart "3365"; ### ERVLB4_6p25.3 ### chr6 rmsk gene 2163367 2165636 . - . gene_id "ERVLB4_6p25.3"; transcript_id "ERVLB4_6p25.3"; locus "ERVLB4_6p25.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0680"; model_cov "1499"; model_pct "26.2"; chr6 rmsk exon 2163367 2163734 920 - . gene_id "ERVLB4_6p25.3"; transcript_id "ERVLB4_6p25.3"; locus "ERVLB4_6p25.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0680"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "185"; repStart "0"; chr6 rmsk exon 2163764 2165189 8100 - . gene_id "ERVLB4_6p25.3"; transcript_id "ERVLB4_6p25.3"; locus "ERVLB4_6p25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0680"; repClass "LTR"; repEnd "1500"; repFamily "ERVL"; repLeft "1"; repStart "-4214"; chr6 rmsk exon 2165190 2165636 1758 - . gene_id "ERVLB4_6p25.3"; transcript_id "ERVLB4_6p25.3"; locus "ERVLB4_6p25.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0680"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "37"; repStart "0"; ### HERVL_6p25.2 ### chr6 rmsk gene 2303028 2307570 . + . gene_id "HERVL_6p25.2"; transcript_id "HERVL_6p25.2"; locus "HERVL_6p25.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0568"; model_cov "4090"; model_pct "72.3"; chr6 rmsk exon 2303028 2307120 31041 + . gene_id "HERVL_6p25.2"; transcript_id "HERVL_6p25.2"; locus "HERVL_6p25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0568"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1564"; chr6 rmsk exon 2307121 2307503 3120 + . gene_id "HERVL_6p25.2"; transcript_id "HERVL_6p25.2"; locus "HERVL_6p25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0568"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "-62"; repStart "1"; chr6 rmsk exon 2307531 2307570 3120 + . gene_id "HERVL_6p25.2"; transcript_id "HERVL_6p25.2"; locus "HERVL_6p25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0568"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "383"; ### HARLEQUIN_6p25.2 ### chr6 rmsk gene 2310409 2318098 . - . gene_id "HARLEQUIN_6p25.2"; transcript_id "HARLEQUIN_6p25.2"; locus "HARLEQUIN_6p25.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0082"; model_cov "6893"; model_pct "100.0"; chr6 rmsk exon 2310409 2310863 3699 - . gene_id "HARLEQUIN_6p25.2"; transcript_id "HARLEQUIN_6p25.2"; locus "HARLEQUIN_6p25.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0082"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 2310864 2316711 43688 - . gene_id "HARLEQUIN_6p25.2"; transcript_id "HARLEQUIN_6p25.2"; locus "HARLEQUIN_6p25.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0082"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1015"; repStart "0"; chr6 rmsk exon 2316759 2317645 43688 - . gene_id "HARLEQUIN_6p25.2"; transcript_id "HARLEQUIN_6p25.2"; locus "HARLEQUIN_6p25.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0082"; repClass "LTR"; repEnd "1014"; repFamily "ERV1"; repLeft "2"; repStart "-5882"; chr6 rmsk exon 2317646 2318098 3569 - . gene_id "HARLEQUIN_6p25.2"; transcript_id "HARLEQUIN_6p25.2"; locus "HARLEQUIN_6p25.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0082"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "8"; repStart "0"; ### ERV316A3_6p25.2a ### chr6 rmsk gene 2528675 2531830 . + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1162"; model_cov "2290"; model_pct "43.8"; chr6 rmsk exon 2528675 2529310 2221 + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1162"; repClass "LTR"; repEnd "2905"; repFamily "ERVL"; repLeft "-2321"; repStart "2260"; chr6 rmsk exon 2529320 2530693 2739 + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1162"; repClass "LTR"; repEnd "4472"; repFamily "ERVL"; repLeft "-754"; repStart "3162"; chr6 rmsk exon 2530818 2531048 1179 + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1162"; repClass "LTR"; repEnd "5108"; repFamily "ERVL"; repLeft "-118"; repStart "4872"; chr6 rmsk exon 2531469 2531564 1179 + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1162"; repClass "LTR"; repEnd "5208"; repFamily "ERVL"; repLeft "-18"; repStart "5109"; chr6 rmsk exon 2531591 2531830 1047 + . gene_id "ERV316A3_6p25.2a"; transcript_id "ERV316A3_6p25.2a"; locus "ERV316A3_6p25.2a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1162"; repClass "LTR"; repEnd "268"; repFamily "ERVL"; repLeft "-212"; repStart "28"; ### ERV316A3_6p25.2b ### chr6 rmsk gene 2591793 2596633 . + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1163"; model_cov "3376"; model_pct "64.6"; chr6 rmsk exon 2591793 2592082 813 + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1163"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "-63"; repStart "75"; chr6 rmsk exon 2592141 2593014 1480 + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1163"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "-4062"; repStart "231"; chr6 rmsk exon 2593104 2593648 3034 + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1163"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "-3605"; repStart "1066"; chr6 rmsk exon 2594261 2595469 3034 + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1163"; repClass "LTR"; repEnd "2838"; repFamily "ERVL"; repLeft "-2388"; repStart "1624"; chr6 rmsk exon 2596055 2596633 554 + . gene_id "ERV316A3_6p25.2b"; transcript_id "ERV316A3_6p25.2b"; locus "ERV316A3_6p25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1163"; repClass "LTR"; repEnd "3244"; repFamily "ERVL"; repLeft "-1982"; repStart "2570"; ### ERVLE_6p25.2a ### chr6 rmsk gene 2686729 2687564 . + . gene_id "ERVLE_6p25.2a"; transcript_id "ERVLE_6p25.2a"; locus "ERVLE_6p25.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1545"; model_cov "749"; model_pct "13.2"; chr6 rmsk exon 2686729 2686852 418 + . gene_id "ERVLE_6p25.2a"; transcript_id "ERVLE_6p25.2a"; locus "ERVLE_6p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1545"; repClass "LTR"; repEnd "2448"; repFamily "ERVL"; repLeft "-3219"; repStart "2323"; chr6 rmsk exon 2687026 2687401 910 + . gene_id "ERVLE_6p25.2a"; transcript_id "ERVLE_6p25.2a"; locus "ERVLE_6p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1545"; repClass "LTR"; repEnd "3043"; repFamily "ERVL"; repLeft "-2624"; repStart "2542"; chr6 rmsk exon 2687451 2687564 414 + . gene_id "ERVLE_6p25.2a"; transcript_id "ERVLE_6p25.2a"; locus "ERVLE_6p25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1545"; repClass "LTR"; repEnd "3253"; repFamily "ERVL"; repLeft "-2414"; repStart "3130"; ### HERVH_6p25.2 ### chr6 rmsk gene 3167036 3173856 . + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0538"; model_cov "4816"; model_pct "62.4"; chr6 rmsk exon 3167036 3167304 1665 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "313"; repFamily "ERV1"; repLeft "-137"; repStart "9"; chr6 rmsk exon 3167305 3170584 16372 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "4234"; repFamily "ERV1"; repLeft "-3479"; repStart "942"; chr6 rmsk exon 3171950 3172859 8358 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4235"; chr6 rmsk exon 3172861 3173080 1409 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 3173079 3173445 2271 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 3173446 3173856 2785 + . gene_id "HERVH_6p25.2"; transcript_id "HERVH_6p25.2"; locus "HERVH_6p25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0538"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6p25.2c ### chr6 rmsk gene 3252869 3256853 . - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1164"; model_cov "1902"; model_pct "36.4"; chr6 rmsk exon 3252869 3252981 371 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "27"; repStart "-298"; chr6 rmsk exon 3252982 3253403 1264 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "4922"; repFamily "ERVL"; repLeft "4476"; repStart "-304"; chr6 rmsk exon 3254827 3255004 1264 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4309"; repStart "-751"; chr6 rmsk exon 3255100 3255254 310 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "4118"; repFamily "ERVL"; repLeft "3956"; repStart "-1108"; chr6 rmsk exon 3255363 3255597 626 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "3126"; repStart "-1716"; chr6 rmsk exon 3255747 3256457 1789 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "2556"; repFamily "ERVL"; repLeft "1812"; repStart "-2670"; chr6 rmsk exon 3256702 3256853 472 - . gene_id "ERV316A3_6p25.2c"; transcript_id "ERV316A3_6p25.2c"; locus "ERV316A3_6p25.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1164"; repClass "LTR"; repEnd "284"; repFamily "ERVL"; repLeft "139"; repStart "-167"; ### HERVL74_6p25.2 ### chr6 rmsk gene 3928387 3931934 . - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0033"; model_cov "2701"; model_pct "47.5"; chr6 rmsk exon 3928387 3928836 2454 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "3952"; repStart "-1265"; chr6 rmsk exon 3928880 3929713 4081 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "2771"; repStart "-2034"; chr6 rmsk exon 3929707 3929765 6554 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "2493"; repFamily "ERVL"; repLeft "2440"; repStart "-3192"; chr6 rmsk exon 3930036 3930785 6554 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "2439"; repFamily "ERVL"; repLeft "1675"; repStart "-3246"; chr6 rmsk exon 3931085 3931457 6554 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "1315"; repStart "-4011"; chr6 rmsk exon 3931763 3931934 6554 - . gene_id "HERVL74_6p25.2"; transcript_id "HERVL74_6p25.2"; locus "HERVL74_6p25.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0033"; repClass "LTR"; repEnd "1314"; repFamily "ERVL"; repLeft "1137"; repStart "-4371"; ### ERVLE_6p25.2b ### chr6 rmsk gene 3975212 3977466 . - . gene_id "ERVLE_6p25.2b"; transcript_id "ERVLE_6p25.2b"; locus "ERVLE_6p25.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1546"; model_cov "1605"; model_pct "28.3"; chr6 rmsk exon 3975212 3975586 445 - . gene_id "ERVLE_6p25.2b"; transcript_id "ERVLE_6p25.2b"; locus "ERVLE_6p25.2b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1546"; repClass "LTR"; repEnd "584"; repFamily "ERVL"; repLeft "29"; repStart "-44"; chr6 rmsk exon 3975628 3976101 5491 - . gene_id "ERVLE_6p25.2b"; transcript_id "ERVLE_6p25.2b"; locus "ERVLE_6p25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1546"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5164"; repStart "0"; chr6 rmsk exon 3976415 3977466 5491 - . gene_id "ERVLE_6p25.2b"; transcript_id "ERVLE_6p25.2b"; locus "ERVLE_6p25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1546"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "4061"; repStart "-504"; ### MER101_6p25.2a ### chr6 rmsk gene 4170718 4173531 . + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0171"; model_cov "1331"; model_pct "20.0"; chr6 rmsk exon 4170718 4171170 2077 + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0171"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "11"; chr6 rmsk exon 4171175 4171332 4498 + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0171"; repClass "LTR"; repEnd "184"; repFamily "ERV1"; repLeft "-6455"; repStart "4"; chr6 rmsk exon 4171630 4172355 4498 + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0171"; repClass "LTR"; repEnd "1006"; repFamily "ERV1"; repLeft "-5633"; repStart "185"; chr6 rmsk exon 4173177 4173257 503 + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0171"; repClass "LTR"; repEnd "4688"; repFamily "ERV1"; repLeft "-1951"; repStart "4607"; chr6 rmsk exon 4173285 4173531 1164 + . gene_id "MER101_6p25.2a"; transcript_id "MER101_6p25.2a"; locus "MER101_6p25.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0171"; repClass "LTR"; repEnd "5617"; repFamily "ERV1"; repLeft "-1022"; repStart "5368"; ### MER101_6p25.2b ### chr6 rmsk gene 4173625 4174418 . + . gene_id "MER101_6p25.2b"; transcript_id "MER101_6p25.2b"; locus "MER101_6p25.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0172"; model_cov "1021"; model_pct "15.4"; chr6 rmsk exon 4173625 4174418 2750 + . gene_id "MER101_6p25.2b"; transcript_id "MER101_6p25.2b"; locus "MER101_6p25.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0172"; repClass "LTR"; repEnd "3792"; repFamily "ERV1"; repLeft "-2847"; repStart "2771"; ### MER101_6p25.2c ### chr6 rmsk gene 4174714 4179435 . + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0173"; model_cov "2497"; model_pct "37.6"; chr6 rmsk exon 4174714 4174854 4364 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0173"; repClass "LTR"; repEnd "2759"; repFamily "ERV1"; repLeft "-3880"; repStart "2618"; chr6 rmsk exon 4175163 4175690 4364 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0173"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3319"; repStart "2760"; chr6 rmsk exon 4176142 4176769 3099 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0173"; repClass "LTR"; repEnd "3946"; repFamily "ERV1"; repLeft "-2693"; repStart "3317"; chr6 rmsk exon 4176774 4177052 799 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0173"; repClass "LTR"; repEnd "4756"; repFamily "ERV1"; repLeft "-1883"; repStart "4482"; chr6 rmsk exon 4178055 4178953 6171 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0173"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "-3"; repStart "5743"; chr6 rmsk exon 4178963 4179435 2414 + . gene_id "MER101_6p25.2c"; transcript_id "MER101_6p25.2c"; locus "MER101_6p25.2c"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0173"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "9"; ### ERV316A3_6p25.1a ### chr6 rmsk gene 4239967 4241334 . + . gene_id "ERV316A3_6p25.1a"; transcript_id "ERV316A3_6p25.1a"; locus "ERV316A3_6p25.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1165"; model_cov "705"; model_pct "13.5"; chr6 rmsk exon 4239967 4240039 264 + . gene_id "ERV316A3_6p25.1a"; transcript_id "ERV316A3_6p25.1a"; locus "ERV316A3_6p25.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1165"; repClass "LTR"; repEnd "323"; repFamily "ERVL"; repLeft "-99"; repStart "249"; chr6 rmsk exon 4240444 4240550 1856 + . gene_id "ERV316A3_6p25.1a"; transcript_id "ERV316A3_6p25.1a"; locus "ERV316A3_6p25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1165"; repClass "LTR"; repEnd "976"; repFamily "ERVL"; repLeft "-4250"; repStart "847"; chr6 rmsk exon 4240783 4241334 1856 + . gene_id "ERV316A3_6p25.1a"; transcript_id "ERV316A3_6p25.1a"; locus "ERV316A3_6p25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1165"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "-3673"; repStart "977"; ### HERVIP10F_6p25.1 ### chr6 rmsk gene 4383883 4389648 . + . gene_id "HERVIP10F_6p25.1"; transcript_id "HERVIP10F_6p25.1"; locus "HERVIP10F_6p25.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0044"; model_cov "5278"; model_pct "68.2"; chr6 rmsk exon 4383883 4384327 1833 + . gene_id "HERVIP10F_6p25.1"; transcript_id "HERVIP10F_6p25.1"; locus "HERVIP10F_6p25.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0044"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 4384329 4387618 9051 + . gene_id "HERVIP10F_6p25.1"; transcript_id "HERVIP10F_6p25.1"; locus "HERVIP10F_6p25.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0044"; repClass "LTR"; repEnd "3175"; repFamily "ERV1"; repLeft "-4562"; repStart "-47"; chr6 rmsk exon 4387616 4389648 9616 + . gene_id "HERVIP10F_6p25.1"; transcript_id "HERVIP10F_6p25.1"; locus "HERVIP10F_6p25.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0044"; repClass "LTR"; repEnd "7449"; repFamily "ERV1"; repLeft "-288"; repStart "5393"; ### HERVL40_6p25.1a ### chr6 rmsk gene 4881840 4884887 . + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0168"; model_cov "953"; model_pct "17.2"; chr6 rmsk exon 4881840 4882221 940 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr6 rmsk exon 4882239 4882466 766 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "300"; repFamily "ERVL"; repLeft "-5230"; repStart "43"; chr6 rmsk exon 4882755 4882995 661 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "-4697"; repStart "606"; chr6 rmsk exon 4883057 4883300 359 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "-769"; repStart "4540"; chr6 rmsk exon 4884224 4884512 870 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "-4"; repStart "5278"; chr6 rmsk exon 4884517 4884887 789 + . gene_id "HERVL40_6p25.1a"; transcript_id "HERVL40_6p25.1a"; locus "HERVL40_6p25.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0168"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-118"; repStart "1"; ### ERV316A3_6p25.1b ### chr6 rmsk gene 4944269 4946147 . - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1166"; model_cov "628"; model_pct "12.0"; chr6 rmsk exon 4944269 4944389 442 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "317"; repStart "0"; chr6 rmsk exon 4944408 4944582 248 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "192"; repFamily "ERVL"; repLeft "1"; repStart "-259"; chr6 rmsk exon 4944628 4944687 295 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "5111"; repStart "-54"; chr6 rmsk exon 4945450 4945608 371 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "5025"; repFamily "ERVL"; repLeft "4857"; repStart "-201"; chr6 rmsk exon 4945720 4945986 541 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "4150"; repStart "-796"; chr6 rmsk exon 4946028 4946147 310 - . gene_id "ERV316A3_6p25.1b"; transcript_id "ERV316A3_6p25.1b"; locus "ERV316A3_6p25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1166"; repClass "LTR"; repEnd "3781"; repFamily "ERVL"; repLeft "3662"; repStart "-1445"; ### HERVL74_6p25.1 ### chr6 rmsk gene 5040795 5044083 . + . gene_id "HERVL74_6p25.1"; transcript_id "HERVL74_6p25.1"; locus "HERVL74_6p25.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0035"; model_cov "1042"; model_pct "18.3"; chr6 rmsk exon 5040795 5040969 677 + . gene_id "HERVL74_6p25.1"; transcript_id "HERVL74_6p25.1"; locus "HERVL74_6p25.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0035"; repClass "LTR"; repEnd "1787"; repFamily "ERVL"; repLeft "-3898"; repStart "1610"; chr6 rmsk exon 5042339 5043237 2374 + . gene_id "HERVL74_6p25.1"; transcript_id "HERVL74_6p25.1"; locus "HERVL74_6p25.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0035"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-424"; repStart "4615"; chr6 rmsk exon 5043268 5043483 844 + . gene_id "HERVL74_6p25.1"; transcript_id "HERVL74_6p25.1"; locus "HERVL74_6p25.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0035"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "-90"; repStart "5376"; chr6 rmsk exon 5043711 5044083 1913 + . gene_id "HERVL74_6p25.1"; transcript_id "HERVL74_6p25.1"; locus "HERVL74_6p25.1"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0035"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-27"; repStart "121"; ### HUERSP3B_6p25.1 ### chr6 rmsk gene 5563003 5566915 . - . gene_id "HUERSP3B_6p25.1"; transcript_id "HUERSP3B_6p25.1"; locus "HUERSP3B_6p25.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0061"; model_cov "3429"; model_pct "46.2"; chr6 rmsk exon 5563003 5563512 3342 - . gene_id "HUERSP3B_6p25.1"; transcript_id "HUERSP3B_6p25.1"; locus "HUERSP3B_6p25.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0061"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "42"; repStart "-83"; chr6 rmsk exon 5563514 5565808 17072 - . gene_id "HUERSP3B_6p25.1"; transcript_id "HUERSP3B_6p25.1"; locus "HUERSP3B_6p25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0061"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "5104"; repStart "-1"; chr6 rmsk exon 5565792 5566121 2313 - . gene_id "HUERSP3B_6p25.1"; transcript_id "HUERSP3B_6p25.1"; locus "HUERSP3B_6p25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0061"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "4713"; repStart "-2389"; chr6 rmsk exon 5566114 5566915 6099 - . gene_id "HUERSP3B_6p25.1"; transcript_id "HUERSP3B_6p25.1"; locus "HUERSP3B_6p25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0061"; repClass "LTR"; repEnd "3873"; repFamily "ERV1"; repLeft "3073"; repStart "-3545"; ### ERVLE_6p25.1a ### chr6 rmsk gene 5876874 5880937 . - . gene_id "ERVLE_6p25.1a"; transcript_id "ERVLE_6p25.1a"; locus "ERVLE_6p25.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1548"; model_cov "3958"; model_pct "69.8"; chr6 rmsk exon 5876874 5877532 1367 - . gene_id "ERVLE_6p25.1a"; transcript_id "ERVLE_6p25.1a"; locus "ERVLE_6p25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1548"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4240"; repStart "-746"; chr6 rmsk exon 5877581 5878802 2623 - . gene_id "ERVLE_6p25.1a"; transcript_id "ERVLE_6p25.1a"; locus "ERVLE_6p25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1548"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "2876"; repStart "-1544"; chr6 rmsk exon 5878818 5880442 2010 - . gene_id "ERVLE_6p25.1a"; transcript_id "ERVLE_6p25.1a"; locus "ERVLE_6p25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1548"; repClass "LTR"; repEnd "3562"; repFamily "ERVL"; repLeft "1731"; repStart "-2105"; chr6 rmsk exon 5880741 5880937 313 - . gene_id "ERVLE_6p25.1a"; transcript_id "ERVLE_6p25.1a"; locus "ERVLE_6p25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1548"; repClass "LTR"; repEnd "786"; repFamily "ERVL"; repLeft "587"; repStart "-4881"; ### ERV316A3_6p25.1c ### chr6 rmsk gene 5897965 5900536 . - . gene_id "ERV316A3_6p25.1c"; transcript_id "ERV316A3_6p25.1c"; locus "ERV316A3_6p25.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1168"; model_cov "2080"; model_pct "39.8"; chr6 rmsk exon 5897965 5900118 2149 - . gene_id "ERV316A3_6p25.1c"; transcript_id "ERV316A3_6p25.1c"; locus "ERV316A3_6p25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1168"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "1"; repStart "-3145"; chr6 rmsk exon 5900119 5900536 1557 - . gene_id "ERV316A3_6p25.1c"; transcript_id "ERV316A3_6p25.1c"; locus "ERV316A3_6p25.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1168"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### HERVH_6p25.1 ### chr6 rmsk gene 6027810 6033600 . - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0539"; model_cov "4931"; model_pct "63.9"; chr6 rmsk exon 6027810 6028236 2802 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 6028237 6028616 2676 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 6028615 6028831 1426 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 6028833 6029487 4229 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 6029486 6029989 3479 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "3999"; repFamily "ERV1"; repLeft "3492"; repStart "-3714"; chr6 rmsk exon 6029980 6030126 888 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 6030097 6033184 17037 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "1"; repStart "-4709"; chr6 rmsk exon 6033187 6033600 2724 - . gene_id "HERVH_6p25.1"; transcript_id "HERVH_6p25.1"; locus "HERVH_6p25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0539"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "17"; repStart "-2"; ### HML3_6p25.1 ### chr6 rmsk gene 6064962 6068594 . - . gene_id "HML3_6p25.1"; transcript_id "HML3_6p25.1"; locus "HML3_6p25.1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0099"; model_cov "3153"; model_pct "52.4"; chr6 rmsk exon 6064962 6067436 18327 - . gene_id "HML3_6p25.1"; transcript_id "HML3_6p25.1"; locus "HML3_6p25.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0099"; repClass "LTR"; repEnd "4118"; repFamily "ERVK"; repLeft "1637"; repStart "-1903"; chr6 rmsk exon 6067438 6068104 4689 - . gene_id "HML3_6p25.1"; transcript_id "HML3_6p25.1"; locus "HML3_6p25.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0099"; repClass "LTR"; repEnd "673"; repFamily "ERVK"; repLeft "1"; repStart "-5348"; chr6 rmsk exon 6068105 6068594 3632 - . gene_id "HML3_6p25.1"; transcript_id "HML3_6p25.1"; locus "HML3_6p25.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0099"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6p25.1b ### chr6 rmsk gene 6399456 6402344 . + . gene_id "ERVLE_6p25.1b"; transcript_id "ERVLE_6p25.1b"; locus "ERVLE_6p25.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1550"; model_cov "2858"; model_pct "50.4"; chr6 rmsk exon 6399456 6401139 3505 + . gene_id "ERVLE_6p25.1b"; transcript_id "ERVLE_6p25.1b"; locus "ERVLE_6p25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1550"; repClass "LTR"; repEnd "3446"; repFamily "ERVL"; repLeft "-2221"; repStart "1736"; chr6 rmsk exon 6401206 6401477 540 + . gene_id "ERVLE_6p25.1b"; transcript_id "ERVLE_6p25.1b"; locus "ERVLE_6p25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1550"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "-1444"; repStart "3919"; chr6 rmsk exon 6401512 6402344 584 + . gene_id "ERVLE_6p25.1b"; transcript_id "ERVLE_6p25.1b"; locus "ERVLE_6p25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1550"; repClass "LTR"; repEnd "5292"; repFamily "ERVL"; repLeft "-375"; repStart "4448"; ### ERVL_6p25.1 ### chr6 rmsk gene 6419960 6422665 . - . gene_id "ERVL_6p25.1"; transcript_id "ERVL_6p25.1"; locus "ERVL_6p25.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0159"; model_cov "2716"; model_pct "47.2"; chr6 rmsk exon 6419960 6422665 15958 - . gene_id "ERVL_6p25.1"; transcript_id "ERVL_6p25.1"; locus "ERVL_6p25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0159"; repClass "LTR"; repEnd "3464"; repFamily "ERVL"; repLeft "748"; repStart "-2293"; ### HERVL40_6p25.1b ### chr6 rmsk gene 6510562 6513116 . - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0169"; model_cov "1319"; model_pct "23.9"; chr6 rmsk exon 6510562 6511041 905 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr6 rmsk exon 6511045 6511381 1087 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5277"; repStart "0"; chr6 rmsk exon 6511452 6511493 256 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "5280"; repFamily "ERVL"; repLeft "5239"; repStart "-250"; chr6 rmsk exon 6511806 6512015 561 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "4989"; repStart "-326"; chr6 rmsk exon 6512313 6512892 2175 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4052"; repStart "-874"; chr6 rmsk exon 6512909 6513116 753 - . gene_id "HERVL40_6p25.1b"; transcript_id "HERVL40_6p25.1b"; locus "HERVL40_6p25.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0169"; repClass "LTR"; repEnd "3371"; repFamily "ERVL"; repLeft "3165"; repStart "-2159"; ### ERV316A3_6p25.1d ### chr6 rmsk gene 6688741 6691684 . + . gene_id "ERV316A3_6p25.1d"; transcript_id "ERV316A3_6p25.1d"; locus "ERV316A3_6p25.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1169"; model_cov "1479"; model_pct "28.3"; chr6 rmsk exon 6688741 6688799 331 + . gene_id "ERV316A3_6p25.1d"; transcript_id "ERV316A3_6p25.1d"; locus "ERV316A3_6p25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1169"; repClass "LTR"; repEnd "2277"; repFamily "ERVL"; repLeft "-2949"; repStart "2223"; chr6 rmsk exon 6690254 6691533 4735 + . gene_id "ERV316A3_6p25.1d"; transcript_id "ERV316A3_6p25.1d"; locus "ERV316A3_6p25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1169"; repClass "LTR"; repEnd "3017"; repFamily "ERVL"; repLeft "-2209"; repStart "1733"; chr6 rmsk exon 6691529 6691684 587 + . gene_id "ERV316A3_6p25.1d"; transcript_id "ERV316A3_6p25.1d"; locus "ERV316A3_6p25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1169"; repClass "LTR"; repEnd "3380"; repFamily "ERVL"; repLeft "-1846"; repStart "3239"; ### ERV316A3_6p25.1e ### chr6 rmsk gene 6862238 6863961 . - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1170"; model_cov "736"; model_pct "14.1"; chr6 rmsk exon 6862238 6862643 1261 - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1170"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "2"; repStart "-4"; chr6 rmsk exon 6862645 6862661 1605 - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1170"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5210"; repStart "0"; chr6 rmsk exon 6863047 6863554 1605 - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1170"; repClass "LTR"; repEnd "5209"; repFamily "ERVL"; repLeft "4667"; repStart "-17"; chr6 rmsk exon 6863683 6863828 448 - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1170"; repClass "LTR"; repEnd "791"; repFamily "ERVL"; repLeft "613"; repStart "-4435"; chr6 rmsk exon 6863829 6863961 270 - . gene_id "ERV316A3_6p25.1e"; transcript_id "ERV316A3_6p25.1e"; locus "ERV316A3_6p25.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1170"; repClass "LTR"; repEnd "141"; repFamily "ERVL"; repLeft "3"; repStart "-321"; ### ERV316A3_6p24.3a ### chr6 rmsk gene 7657086 7661464 . - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1171"; model_cov "3254"; model_pct "62.3"; chr6 rmsk exon 7657086 7657402 1030 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "66"; repStart "-36"; chr6 rmsk exon 7657457 7658716 3310 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "3901"; repStart "-50"; chr6 rmsk exon 7658711 7658889 821 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "2427"; repStart "-2630"; chr6 rmsk exon 7659324 7659339 821 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "2426"; repFamily "ERVL"; repLeft "2415"; repStart "-2800"; chr6 rmsk exon 7659641 7659730 821 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "2414"; repFamily "ERVL"; repLeft "2333"; repStart "-2812"; chr6 rmsk exon 7659802 7661464 3446 - . gene_id "ERV316A3_6p24.3a"; transcript_id "ERV316A3_6p24.3a"; locus "ERV316A3_6p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1171"; repClass "LTR"; repEnd "2088"; repFamily "ERVL"; repLeft "370"; repStart "-3138"; ### HERVL_6p24.3a ### chr6 rmsk gene 8403268 8409888 . - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0569"; model_cov "5626"; model_pct "99.5"; chr6 rmsk exon 8403268 8403306 2779 - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0569"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "406"; repStart "0"; chr6 rmsk exon 8403436 8403838 2779 - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0569"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "1"; repStart "-39"; chr6 rmsk exon 8403957 8407927 32683 - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0569"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1515"; repStart "0"; chr6 rmsk exon 8407912 8409396 11907 - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0569"; repClass "LTR"; repEnd "1488"; repFamily "ERVL"; repLeft "1"; repStart "-4166"; chr6 rmsk exon 8409397 8409888 2621 - . gene_id "HERVL_6p24.3a"; transcript_id "HERVL_6p24.3a"; locus "HERVL_6p24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0569"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_6p24.3a ### chr6 rmsk gene 8879207 8881763 . - . gene_id "ERVLE_6p24.3a"; transcript_id "ERVLE_6p24.3a"; locus "ERVLE_6p24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1551"; model_cov "1177"; model_pct "20.8"; chr6 rmsk exon 8879207 8879911 907 - . gene_id "ERVLE_6p24.3a"; transcript_id "ERVLE_6p24.3a"; locus "ERVLE_6p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1551"; repClass "LTR"; repEnd "4909"; repFamily "ERVL"; repLeft "4161"; repStart "-758"; chr6 rmsk exon 8880548 8880809 561 - . gene_id "ERVLE_6p24.3a"; transcript_id "ERVLE_6p24.3a"; locus "ERVLE_6p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1551"; repClass "LTR"; repEnd "3442"; repFamily "ERVL"; repLeft "3176"; repStart "-2225"; chr6 rmsk exon 8881605 8881763 296 - . gene_id "ERVLE_6p24.3a"; transcript_id "ERVLE_6p24.3a"; locus "ERVLE_6p24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1551"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "401"; repStart "-5103"; ### HERVL_6p24.3b ### chr6 rmsk gene 9146719 9153053 . + . gene_id "HERVL_6p24.3b"; transcript_id "HERVL_6p24.3b"; locus "HERVL_6p24.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0571"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 9146719 9146771 317 + . gene_id "HERVL_6p24.3b"; transcript_id "HERVL_6p24.3b"; locus "HERVL_6p24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0571"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; chr6 rmsk exon 9146773 9152431 44589 + . gene_id "HERVL_6p24.3b"; transcript_id "HERVL_6p24.3b"; locus "HERVL_6p24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0571"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr6 rmsk exon 9152435 9152851 2679 + . gene_id "HERVL_6p24.3b"; transcript_id "HERVL_6p24.3b"; locus "HERVL_6p24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0571"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-107"; chr6 rmsk exon 9152988 9153053 422 + . gene_id "HERVL_6p24.3b"; transcript_id "HERVL_6p24.3b"; locus "HERVL_6p24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0571"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "373"; ### ERVLE_6p24.3b ### chr6 rmsk gene 9174207 9178010 . - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1552"; model_cov "2569"; model_pct "45.3"; chr6 rmsk exon 9174207 9174677 639 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "4944"; repFamily "ERVL"; repLeft "4467"; repStart "-723"; chr6 rmsk exon 9174834 9175033 272 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "4265"; repFamily "ERVL"; repLeft "4051"; repStart "-1402"; chr6 rmsk exon 9175133 9175512 785 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "3890"; repFamily "ERVL"; repLeft "3522"; repStart "-1777"; chr6 rmsk exon 9175790 9176081 785 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "3230"; repStart "-2146"; chr6 rmsk exon 9176133 9176370 615 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "2686"; repStart "-2745"; chr6 rmsk exon 9176457 9176827 584 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "1721"; repStart "-3578"; chr6 rmsk exon 9177440 9178010 597 - . gene_id "ERVLE_6p24.3b"; transcript_id "ERVLE_6p24.3b"; locus "ERVLE_6p24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1552"; repClass "LTR"; repEnd "1293"; repFamily "ERVL"; repLeft "678"; repStart "-4374"; ### ERVLE_6p24.3c ### chr6 rmsk gene 9207926 9209712 . + . gene_id "ERVLE_6p24.3c"; transcript_id "ERVLE_6p24.3c"; locus "ERVLE_6p24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1553"; model_cov "1925"; model_pct "34.0"; chr6 rmsk exon 9207926 9208250 1560 + . gene_id "ERVLE_6p24.3c"; transcript_id "ERVLE_6p24.3c"; locus "ERVLE_6p24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1553"; repClass "LTR"; repEnd "3768"; repFamily "ERVL"; repLeft "-1899"; repStart "3439"; chr6 rmsk exon 9208249 9209712 5983 + . gene_id "ERVLE_6p24.3c"; transcript_id "ERVLE_6p24.3c"; locus "ERVLE_6p24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1553"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "4069"; ### ERVLB4_6p24.3 ### chr6 rmsk gene 9274937 9276216 . - . gene_id "ERVLB4_6p24.3"; transcript_id "ERVLB4_6p24.3"; locus "ERVLB4_6p24.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0682"; model_cov "578"; model_pct "10.1"; chr6 rmsk exon 9274937 9275500 3122 - . gene_id "ERVLB4_6p24.3"; transcript_id "ERVLB4_6p24.3"; locus "ERVLB4_6p24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0682"; repClass "LTR"; repEnd "580"; repFamily "ERVL"; repLeft "2"; repStart "-5134"; chr6 rmsk exon 9275502 9275541 1510 - . gene_id "ERVLB4_6p24.3"; transcript_id "ERVLB4_6p24.3"; locus "ERVLB4_6p24.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0682"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "517"; repStart "0"; chr6 rmsk exon 9275590 9276026 1793 - . gene_id "ERVLB4_6p24.3"; transcript_id "ERVLB4_6p24.3"; locus "ERVLB4_6p24.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0682"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "37"; repStart "-40"; chr6 rmsk exon 9276138 9276216 467 - . gene_id "ERVLB4_6p24.3"; transcript_id "ERVLB4_6p24.3"; locus "ERVLB4_6p24.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0682"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "1"; repStart "-477"; ### ERV316A3_6p24.3b ### chr6 rmsk gene 9414073 9416206 . + . gene_id "ERV316A3_6p24.3b"; transcript_id "ERV316A3_6p24.3b"; locus "ERV316A3_6p24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1174"; model_cov "2025"; model_pct "38.7"; chr6 rmsk exon 9414073 9415166 2802 + . gene_id "ERV316A3_6p24.3b"; transcript_id "ERV316A3_6p24.3b"; locus "ERV316A3_6p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1174"; repClass "LTR"; repEnd "4319"; repFamily "ERVL"; repLeft "-907"; repStart "2990"; chr6 rmsk exon 9415468 9415520 819 + . gene_id "ERV316A3_6p24.3b"; transcript_id "ERV316A3_6p24.3b"; locus "ERV316A3_6p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1174"; repClass "LTR"; repEnd "4361"; repFamily "ERVL"; repLeft "-865"; repStart "4320"; chr6 rmsk exon 9415559 9416206 1332 + . gene_id "ERV316A3_6p24.3b"; transcript_id "ERV316A3_6p24.3b"; locus "ERV316A3_6p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1174"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "-55"; repStart "4516"; ### HERVL_6p24.3c ### chr6 rmsk gene 9549336 9551824 . + . gene_id "HERVL_6p24.3c"; transcript_id "HERVL_6p24.3c"; locus "HERVL_6p24.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0574"; model_cov "2007"; model_pct "35.5"; chr6 rmsk exon 9549336 9549669 1351 + . gene_id "HERVL_6p24.3c"; transcript_id "HERVL_6p24.3c"; locus "HERVL_6p24.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0574"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-9"; chr6 rmsk exon 9549713 9549747 296 + . gene_id "HERVL_6p24.3c"; transcript_id "HERVL_6p24.3c"; locus "HERVL_6p24.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0574"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "405"; chr6 rmsk exon 9549766 9550098 2604 + . gene_id "HERVL_6p24.3c"; transcript_id "HERVL_6p24.3c"; locus "HERVL_6p24.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0574"; repClass "LTR"; repEnd "3395"; repFamily "ERVL"; repLeft "-2259"; repStart "3063"; chr6 rmsk exon 9550149 9551824 13582 + . gene_id "HERVL_6p24.3c"; transcript_id "HERVL_6p24.3c"; locus "HERVL_6p24.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0574"; repClass "LTR"; repEnd "5068"; repFamily "ERVL"; repLeft "-586"; repStart "3393"; ### ERV316A3_6p24.3c ### chr6 rmsk gene 9720550 9721959 . - . gene_id "ERV316A3_6p24.3c"; transcript_id "ERV316A3_6p24.3c"; locus "ERV316A3_6p24.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1175"; model_cov "1039"; model_pct "19.9"; chr6 rmsk exon 9720550 9720914 740 - . gene_id "ERV316A3_6p24.3c"; transcript_id "ERV316A3_6p24.3c"; locus "ERV316A3_6p24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1175"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "6"; repStart "-20"; chr6 rmsk exon 9720920 9721959 1795 - . gene_id "ERV316A3_6p24.3c"; transcript_id "ERV316A3_6p24.3c"; locus "ERV316A3_6p24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1175"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4187"; repStart "0"; ### HERV9_6p24.3 ### chr6 rmsk gene 9721961 9728411 . + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0065"; model_cov "4465"; model_pct "52.9"; chr6 rmsk exon 9721961 9722688 5454 + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0065"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 9722689 9725722 15275 + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0065"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "-5456"; repStart "1"; chr6 rmsk exon 9725722 9726823 4875 + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0065"; repClass "LTR"; repEnd "7803"; repFamily "ERV1"; repLeft "-633"; repStart "7089"; chr6 rmsk exon 9726822 9727584 6043 + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0065"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7664"; chr6 rmsk exon 9727585 9728411 4720 + . gene_id "HERV9_6p24.3"; transcript_id "HERV9_6p24.3"; locus "HERV9_6p24.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0065"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6p24.3d ### chr6 rmsk gene 9728421 9729276 . - . gene_id "ERV316A3_6p24.3d"; transcript_id "ERV316A3_6p24.3d"; locus "ERV316A3_6p24.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1176"; model_cov "954"; model_pct "18.3"; chr6 rmsk exon 9728421 9729276 1879 - . gene_id "ERV316A3_6p24.3d"; transcript_id "ERV316A3_6p24.3d"; locus "ERV316A3_6p24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1176"; repClass "LTR"; repEnd "4180"; repFamily "ERVL"; repLeft "3226"; repStart "-1046"; ### HERVL40_6p24.3 ### chr6 rmsk gene 10128221 10129725 . + . gene_id "HERVL40_6p24.3"; transcript_id "HERVL40_6p24.3"; locus "HERVL40_6p24.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0171"; model_cov "1381"; model_pct "25.0"; chr6 rmsk exon 10128221 10128283 296 + . gene_id "HERVL40_6p24.3"; transcript_id "HERVL40_6p24.3"; locus "HERVL40_6p24.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0171"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "404"; chr6 rmsk exon 10128297 10128702 1369 + . gene_id "HERVL40_6p24.3"; transcript_id "HERVL40_6p24.3"; locus "HERVL40_6p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0171"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-5123"; repStart "17"; chr6 rmsk exon 10128756 10129725 3037 + . gene_id "HERVL40_6p24.3"; transcript_id "HERVL40_6p24.3"; locus "HERVL40_6p24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0171"; repClass "LTR"; repEnd "3883"; repFamily "ERVL"; repLeft "-1647"; repStart "2892"; ### ERV316A3_6p24.3e ### chr6 rmsk gene 10470652 10471818 . - . gene_id "ERV316A3_6p24.3e"; transcript_id "ERV316A3_6p24.3e"; locus "ERV316A3_6p24.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1177"; model_cov "1248"; model_pct "23.9"; chr6 rmsk exon 10470652 10471818 2447 - . gene_id "ERV316A3_6p24.3e"; transcript_id "ERV316A3_6p24.3e"; locus "ERV316A3_6p24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1177"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3978"; repStart "0"; ### ERVL_6p24.2 ### chr6 rmsk gene 10639067 10641401 . - . gene_id "ERVL_6p24.2"; transcript_id "ERVL_6p24.2"; locus "ERVL_6p24.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0160"; model_cov "1606"; model_pct "27.9"; chr6 rmsk exon 10639067 10639720 2402 - . gene_id "ERVL_6p24.2"; transcript_id "ERVL_6p24.2"; locus "ERVL_6p24.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0160"; repClass "LTR"; repEnd "5374"; repFamily "ERVL"; repLeft "4696"; repStart "-383"; chr6 rmsk exon 10639826 10640070 2532 - . gene_id "ERVL_6p24.2"; transcript_id "ERVL_6p24.2"; locus "ERVL_6p24.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0160"; repClass "LTR"; repEnd "4697"; repFamily "ERVL"; repLeft "4481"; repStart "-1060"; chr6 rmsk exon 10640377 10641047 2532 - . gene_id "ERVL_6p24.2"; transcript_id "ERVL_6p24.2"; locus "ERVL_6p24.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0160"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "3794"; repStart "-1277"; chr6 rmsk exon 10641371 10641401 2532 - . gene_id "ERVL_6p24.2"; transcript_id "ERVL_6p24.2"; locus "ERVL_6p24.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0160"; repClass "LTR"; repEnd "3793"; repFamily "ERVL"; repLeft "3767"; repStart "-1964"; ### HERVFRD_6p24.2 ### chr6 rmsk gene 11102745 11112217 . - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0073"; model_cov "6950"; model_pct "96.5"; chr6 rmsk exon 11102745 11103449 3989 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0073"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr6 rmsk exon 11103451 11104615 8043 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0073"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6086"; repStart "-8"; chr6 rmsk exon 11105451 11107309 1465 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0073"; repClass "LTR"; repEnd "6740"; repFamily "ERV1"; repLeft "4871"; repStart "-465"; chr6 rmsk exon 11107320 11107957 1095 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0073"; repClass "LTR"; repEnd "4260"; repFamily "ERV1"; repLeft "3609"; repStart "-2945"; chr6 rmsk exon 11108230 11111700 9913 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0073"; repClass "LTR"; repEnd "3334"; repFamily "ERV1"; repLeft "15"; repStart "-3871"; chr6 rmsk exon 11111707 11112217 3214 - . gene_id "HERVFRD_6p24.2"; transcript_id "HERVFRD_6p24.2"; locus "HERVFRD_6p24.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0073"; repClass "LTR"; repEnd "516"; repFamily "ERV1"; repLeft "1"; repStart "-218"; ### ERV316A3_6p24.2 ### chr6 rmsk gene 11498232 11500371 . - . gene_id "ERV316A3_6p24.2"; transcript_id "ERV316A3_6p24.2"; locus "ERV316A3_6p24.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1179"; model_cov "1683"; model_pct "32.2"; chr6 rmsk exon 11498232 11498323 2395 - . gene_id "ERV316A3_6p24.2"; transcript_id "ERV316A3_6p24.2"; locus "ERV316A3_6p24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1179"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2844"; repStart "-2291"; chr6 rmsk exon 11498621 11499991 2395 - . gene_id "ERV316A3_6p24.2"; transcript_id "ERV316A3_6p24.2"; locus "ERV316A3_6p24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1179"; repClass "LTR"; repEnd "2843"; repFamily "ERVL"; repLeft "1404"; repStart "-2383"; chr6 rmsk exon 11500085 11500223 492 - . gene_id "ERV316A3_6p24.2"; transcript_id "ERV316A3_6p24.2"; locus "ERV316A3_6p24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1179"; repClass "LTR"; repEnd "1242"; repFamily "ERVL"; repLeft "1089"; repStart "-3984"; chr6 rmsk exon 11500227 11500371 547 - . gene_id "ERV316A3_6p24.2"; transcript_id "ERV316A3_6p24.2"; locus "ERV316A3_6p24.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1179"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "1"; repStart "-316"; ### ERVLE_6p24.1a ### chr6 rmsk gene 11657132 11658462 . - . gene_id "ERVLE_6p24.1a"; transcript_id "ERVLE_6p24.1a"; locus "ERVLE_6p24.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1554"; model_cov "684"; model_pct "12.1"; chr6 rmsk exon 11657132 11657426 590 - . gene_id "ERVLE_6p24.1a"; transcript_id "ERVLE_6p24.1a"; locus "ERVLE_6p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1554"; repClass "LTR"; repEnd "1903"; repFamily "ERVL"; repLeft "1589"; repStart "-3764"; chr6 rmsk exon 11657847 11658047 286 - . gene_id "ERVLE_6p24.1a"; transcript_id "ERVLE_6p24.1a"; locus "ERVLE_6p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1554"; repClass "LTR"; repEnd "1097"; repFamily "ERVL"; repLeft "888"; repStart "-4570"; chr6 rmsk exon 11658314 11658462 272 - . gene_id "ERVLE_6p24.1a"; transcript_id "ERVLE_6p24.1a"; locus "ERVLE_6p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1554"; repClass "LTR"; repEnd "581"; repFamily "ERVL"; repLeft "420"; repStart "-5086"; ### ERVLE_6p24.1b ### chr6 rmsk gene 11684697 11686089 . - . gene_id "ERVLE_6p24.1b"; transcript_id "ERVLE_6p24.1b"; locus "ERVLE_6p24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1555"; model_cov "1312"; model_pct "23.2"; chr6 rmsk exon 11684697 11685681 1809 - . gene_id "ERVLE_6p24.1b"; transcript_id "ERVLE_6p24.1b"; locus "ERVLE_6p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1555"; repClass "LTR"; repEnd "1514"; repFamily "ERVL"; repLeft "438"; repStart "-4153"; chr6 rmsk exon 11685848 11686089 273 - . gene_id "ERVLE_6p24.1b"; transcript_id "ERVLE_6p24.1b"; locus "ERVLE_6p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1555"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "82"; repStart "-5349"; ### HERVFH21_6p24.1 ### chr6 rmsk gene 11786725 11791766 . + . gene_id "HERVFH21_6p24.1"; transcript_id "HERVFH21_6p24.1"; locus "HERVFH21_6p24.1"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0015"; model_cov "3522"; model_pct "53.9"; chr6 rmsk exon 11786725 11788884 7253 + . gene_id "HERVFH21_6p24.1"; transcript_id "HERVFH21_6p24.1"; locus "HERVFH21_6p24.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0015"; repClass "LTR"; repEnd "5333"; repFamily "ERV1"; repLeft "-1196"; repStart "3042"; chr6 rmsk exon 11789210 11789390 734 + . gene_id "HERVFH21_6p24.1"; transcript_id "HERVFH21_6p24.1"; locus "HERVFH21_6p24.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0015"; repClass "LTR"; repEnd "6074"; repFamily "ERV1"; repLeft "-455"; repStart "5896"; chr6 rmsk exon 11790206 11791263 2022 + . gene_id "HERVFH21_6p24.1"; transcript_id "HERVFH21_6p24.1"; locus "HERVFH21_6p24.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0015"; repClass "LTR"; repEnd "6524"; repFamily "ERV1"; repLeft "-5"; repStart "5471"; chr6 rmsk exon 11791264 11791766 2959 + . gene_id "HERVFH21_6p24.1"; transcript_id "HERVFH21_6p24.1"; locus "HERVFH21_6p24.1"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0015"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_6p24.1 ### chr6 rmsk gene 12380757 12381686 . + . gene_id "ERVLB4_6p24.1"; transcript_id "ERVLB4_6p24.1"; locus "ERVLB4_6p24.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0685"; model_cov "954"; model_pct "16.7"; chr6 rmsk exon 12380757 12380860 413 + . gene_id "ERVLB4_6p24.1"; transcript_id "ERVLB4_6p24.1"; locus "ERVLB4_6p24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0685"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "-2556"; repStart "3055"; chr6 rmsk exon 12380932 12381686 1033 + . gene_id "ERVLB4_6p24.1"; transcript_id "ERVLB4_6p24.1"; locus "ERVLB4_6p24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0685"; repClass "LTR"; repEnd "4112"; repFamily "ERVL"; repLeft "-1602"; repStart "3261"; ### HERVH_6p24.1 ### chr6 rmsk gene 12667170 12673014 . + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0540"; model_cov "4898"; model_pct "63.5"; chr6 rmsk exon 12667170 12667579 2743 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 12667582 12670761 16198 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 12670756 12670903 822 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 12670903 12671396 3266 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr6 rmsk exon 12671399 12672061 4326 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 12672063 12672278 1371 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 12672279 12672655 2268 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 12672656 12673014 2018 + . gene_id "HERVH_6p24.1"; transcript_id "HERVH_6p24.1"; locus "HERVH_6p24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0540"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_6p24.1 ### chr6 rmsk gene 12742106 12744723 . - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0204"; model_cov "1407"; model_pct "23.7"; chr6 rmsk exon 12742106 12742650 3637 - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0204"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr6 rmsk exon 12742651 12743580 5463 - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0204"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5013"; repStart "-2"; chr6 rmsk exon 12744104 12744489 2769 - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0204"; repClass "LTR"; repEnd "5027"; repFamily "ERV1"; repLeft "4638"; repStart "-919"; chr6 rmsk exon 12744484 12744569 492 - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0204"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chr6 rmsk exon 12744570 12744723 1056 - . gene_id "MER41_6p24.1"; transcript_id "MER41_6p24.1"; locus "MER41_6p24.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0204"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### HERVW_6p23 ### chr6 rmsk gene 13878336 13883724 . + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0130"; model_cov "5897"; model_pct "68.4"; chr6 rmsk exon 13878336 13878839 3536 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr6 rmsk exon 13878864 13880548 14444 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "1665"; repFamily "ERV1"; repLeft "-6961"; repStart "22"; chr6 rmsk exon 13880849 13881161 14444 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "-6619"; repStart "1666"; chr6 rmsk exon 13881154 13883083 10969 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2430"; chr6 rmsk exon 13883077 13883115 306 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr6 rmsk exon 13883106 13883392 2373 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "-5"; repStart "8335"; chr6 rmsk exon 13883397 13883724 2431 + . gene_id "HERVW_6p23"; transcript_id "HERVW_6p23"; locus "HERVW_6p23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0130"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER41_6p23 ### chr6 rmsk gene 13945813 13953267 . - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0205"; model_cov "4530"; model_pct "76.2"; chr6 rmsk exon 13945813 13946140 2430 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0205"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "215"; repStart "0"; chr6 rmsk exon 13946464 13946721 2430 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0205"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "2"; repStart "-307"; chr6 rmsk exon 13946723 13949085 12144 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0205"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "3609"; repStart "-1"; chr6 rmsk exon 13949800 13950498 3421 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0205"; repClass "LTR"; repEnd "3645"; repFamily "ERV1"; repLeft "2862"; repStart "-2301"; chr6 rmsk exon 13951097 13951608 3421 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0205"; repClass "LTR"; repEnd "2853"; repFamily "ERV1"; repLeft "2349"; repStart "-3093"; chr6 rmsk exon 13951598 13952524 5093 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0205"; repClass "LTR"; repEnd "1126"; repFamily "ERV1"; repLeft "219"; repStart "-4820"; chr6 rmsk exon 13952654 13953267 1911 - . gene_id "MER41_6p23"; transcript_id "MER41_6p23"; locus "MER41_6p23"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0205"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6p23 ### chr6 rmsk gene 14296942 14302823 . - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0541"; model_cov "4916"; model_pct "63.7"; chr6 rmsk exon 14296942 14297390 3662 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 14297391 14297770 2611 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 14297769 14297985 1427 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 14297987 14298648 4493 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 14298651 14299152 3384 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 14299143 14299292 957 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 14299272 14302375 20862 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 14302376 14302823 3699 - . gene_id "HERVH_6p23"; transcript_id "HERVH_6p23"; locus "HERVH_6p23"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0541"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_6p23 ### chr6 rmsk gene 14432680 14438711 . + . gene_id "ERVLB4_6p23"; transcript_id "ERVLB4_6p23"; locus "ERVLB4_6p23"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0686"; model_cov "5364"; model_pct "93.9"; chr6 rmsk exon 14432680 14432714 33368 + . gene_id "ERVLB4_6p23"; transcript_id "ERVLB4_6p23"; locus "ERVLB4_6p23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0686"; repClass "LTR"; repEnd "48"; repFamily "ERVL"; repLeft "-5666"; repStart "15"; chr6 rmsk exon 14433039 14434143 33368 + . gene_id "ERVLB4_6p23"; transcript_id "ERVLB4_6p23"; locus "ERVLB4_6p23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0686"; repClass "LTR"; repEnd "1133"; repFamily "ERVL"; repLeft "-4581"; repStart "49"; chr6 rmsk exon 14434560 14438711 33368 + . gene_id "ERVLB4_6p23"; transcript_id "ERVLB4_6p23"; locus "ERVLB4_6p23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0686"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "-333"; repStart "1134"; ### ERV316A3_6p23 ### chr6 rmsk gene 14563152 14566549 . + . gene_id "ERV316A3_6p23"; transcript_id "ERV316A3_6p23"; locus "ERV316A3_6p23"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1180"; model_cov "2690"; model_pct "51.5"; chr6 rmsk exon 14563152 14564631 6370 + . gene_id "ERV316A3_6p23"; transcript_id "ERV316A3_6p23"; locus "ERV316A3_6p23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1180"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "-3632"; repStart "97"; chr6 rmsk exon 14564997 14565636 6370 + . gene_id "ERV316A3_6p23"; transcript_id "ERV316A3_6p23"; locus "ERV316A3_6p23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1180"; repClass "LTR"; repEnd "2240"; repFamily "ERVL"; repLeft "-2986"; repStart "1595"; chr6 rmsk exon 14565635 14566189 1791 + . gene_id "ERV316A3_6p23"; transcript_id "ERV316A3_6p23"; locus "ERV316A3_6p23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1180"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "-289"; repStart "4389"; chr6 rmsk exon 14566191 14566549 1137 + . gene_id "ERV316A3_6p23"; transcript_id "ERV316A3_6p23"; locus "ERV316A3_6p23"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1180"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "49"; ### HUERSP2_6p22.3 ### chr6 rmsk gene 15337166 15339964 . + . gene_id "HUERSP2_6p22.3"; transcript_id "HUERSP2_6p22.3"; locus "HUERSP2_6p22.3"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0057"; model_cov "2597"; model_pct "84.1"; chr6 rmsk exon 15337166 15339538 13409 + . gene_id "HUERSP2_6p22.3"; transcript_id "HUERSP2_6p22.3"; locus "HUERSP2_6p22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0057"; repClass "LTR"; repEnd "2683"; repFamily "ERV1"; repLeft "-405"; repStart "208"; chr6 rmsk exon 15339835 15339964 939 + . gene_id "HUERSP2_6p22.3"; transcript_id "HUERSP2_6p22.3"; locus "HUERSP2_6p22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0057"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "-282"; repStart "2684"; ### MER41_6p22.3 ### chr6 rmsk gene 15555300 15562289 . + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0206"; model_cov "3645"; model_pct "61.3"; chr6 rmsk exon 15555300 15555924 4059 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0206"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 15555925 15556183 2995 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0206"; repClass "LTR"; repEnd "301"; repFamily "ERV1"; repLeft "-5645"; repStart "1"; chr6 rmsk exon 15556480 15556912 2898 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0206"; repClass "LTR"; repEnd "732"; repFamily "ERV1"; repLeft "-5214"; repStart "302"; chr6 rmsk exon 15556909 15558273 8763 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0206"; repClass "LTR"; repEnd "4435"; repFamily "ERV1"; repLeft "-1511"; repStart "3025"; chr6 rmsk exon 15558567 15558816 8763 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0206"; repClass "LTR"; repEnd "4683"; repFamily "ERV1"; repLeft "-1263"; repStart "4436"; chr6 rmsk exon 15560382 15561652 7743 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0206"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4688"; chr6 rmsk exon 15561654 15562289 3997 + . gene_id "MER41_6p22.3"; transcript_id "MER41_6p22.3"; locus "MER41_6p22.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0206"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_6p22.3a ### chr6 rmsk gene 15715519 15717678 . + . gene_id "ERVLE_6p22.3a"; transcript_id "ERVLE_6p22.3a"; locus "ERVLE_6p22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1558"; model_cov "1124"; model_pct "19.8"; chr6 rmsk exon 15715519 15716044 619 + . gene_id "ERVLE_6p22.3a"; transcript_id "ERVLE_6p22.3a"; locus "ERVLE_6p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1558"; repClass "LTR"; repEnd "574"; repFamily "ERVL"; repLeft "-5093"; repStart "45"; chr6 rmsk exon 15716488 15716619 363 + . gene_id "ERVLE_6p22.3a"; transcript_id "ERVLE_6p22.3a"; locus "ERVLE_6p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1558"; repClass "LTR"; repEnd "2611"; repFamily "ERVL"; repLeft "-3056"; repStart "2476"; chr6 rmsk exon 15716613 15716775 407 + . gene_id "ERVLE_6p22.3a"; transcript_id "ERVLE_6p22.3a"; locus "ERVLE_6p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1558"; repClass "LTR"; repEnd "2814"; repFamily "ERVL"; repLeft "-2853"; repStart "2648"; chr6 rmsk exon 15717400 15717678 785 + . gene_id "ERVLE_6p22.3a"; transcript_id "ERVLE_6p22.3a"; locus "ERVLE_6p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1558"; repClass "LTR"; repEnd "3253"; repFamily "ERVL"; repLeft "-2414"; repStart "2959"; ### HERV3_6p22.3 ### chr6 rmsk gene 16223536 16231782 . - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0021"; model_cov "5259"; model_pct "62.4"; chr6 rmsk exon 16223536 16224106 3974 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 16224109 16224613 2699 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7919"; repStart "0"; chr6 rmsk exon 16224613 16225093 945 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "7040"; repFamily "ERV1"; repLeft "6557"; repStart "-1386"; chr6 rmsk exon 16225882 16226058 4563 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "6511"; repFamily "ERV1"; repLeft "6325"; repStart "-1915"; chr6 rmsk exon 16227475 16228655 6534 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "6324"; repFamily "ERV1"; repLeft "4857"; repStart "-2102"; chr6 rmsk exon 16228645 16228768 640 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3701"; repStart "-4602"; chr6 rmsk exon 16228761 16229166 1742 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "2069"; repStart "-5950"; chr6 rmsk exon 16229436 16231656 7400 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "2087"; repFamily "ERV1"; repLeft "1"; repStart "-6339"; chr6 rmsk exon 16231657 16231782 567 - . gene_id "HERV3_6p22.3"; transcript_id "HERV3_6p22.3"; locus "HERV3_6p22.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0021"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "419"; repStart "0"; ### HERVH_6p22.3a ### chr6 rmsk gene 16259012 16264893 . - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0542"; model_cov "4904"; model_pct "63.6"; chr6 rmsk exon 16259012 16259427 2829 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 16259428 16259805 2175 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 16259804 16260020 1371 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 16260022 16260684 4257 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 16260687 16261189 3381 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 16261190 16261327 719 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "3140"; repStart "-4433"; chr6 rmsk exon 16261312 16264479 16315 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "1"; repStart "-4720"; chr6 rmsk exon 16264482 16264893 2902 - . gene_id "HERVH_6p22.3a"; transcript_id "HERVH_6p22.3a"; locus "HERVH_6p22.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0542"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERV9_6p22.3 ### chr6 rmsk gene 16455730 16464625 . + . gene_id "HERV9_6p22.3"; transcript_id "HERV9_6p22.3"; locus "HERV9_6p22.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0066"; model_cov "7977"; model_pct "94.6"; chr6 rmsk exon 16455730 16456250 3583 + . gene_id "HERV9_6p22.3"; transcript_id "HERV9_6p22.3"; locus "HERV9_6p22.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0066"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 16456271 16462617 43301 + . gene_id "HERV9_6p22.3"; transcript_id "HERV9_6p22.3"; locus "HERV9_6p22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0066"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "-1935"; repStart "29"; chr6 rmsk exon 16462618 16464105 12041 + . gene_id "HERV9_6p22.3"; transcript_id "HERV9_6p22.3"; locus "HERV9_6p22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0066"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6931"; chr6 rmsk exon 16464106 16464625 3663 + . gene_id "HERV9_6p22.3"; transcript_id "HERV9_6p22.3"; locus "HERV9_6p22.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0066"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_6p22.3b ### chr6 rmsk gene 16885985 16891647 . + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0543"; model_cov "4898"; model_pct "63.5"; chr6 rmsk exon 16885985 16886384 2671 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 16886387 16889348 20462 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 16889343 16889490 826 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 16889490 16889983 3194 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr6 rmsk exon 16889986 16890648 4246 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 16890650 16890867 1349 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 16890868 16891245 2132 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 16891246 16891647 2580 + . gene_id "HERVH_6p22.3b"; transcript_id "HERVH_6p22.3b"; locus "HERVH_6p22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0543"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6p22.3a ### chr6 rmsk gene 17265730 17270638 . + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1181"; model_cov "2391"; model_pct "45.8"; chr6 rmsk exon 17265730 17266715 3527 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "3536"; repFamily "ERVL"; repLeft "-1690"; repStart "2550"; chr6 rmsk exon 17267023 17267385 3527 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "3922"; repFamily "ERVL"; repLeft "-1304"; repStart "3537"; chr6 rmsk exon 17267773 17268029 3527 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "-1029"; repStart "3923"; chr6 rmsk exon 17269151 17269633 2236 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "4973"; repFamily "ERVL"; repLeft "-253"; repStart "4477"; chr6 rmsk exon 17270069 17270306 2236 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4974"; chr6 rmsk exon 17270309 17270638 1199 + . gene_id "ERV316A3_6p22.3a"; transcript_id "ERV316A3_6p22.3a"; locus "ERV316A3_6p22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1181"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "-104"; repStart "1"; ### HERVFH21_6p22.3 ### chr6 rmsk gene 17318885 17327379 . - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0016"; model_cov "6470"; model_pct "99.1"; chr6 rmsk exon 17318885 17319295 2558 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 17319296 17320318 2059 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "6524"; repFamily "ERV1"; repLeft "5502"; repStart "-5"; chr6 rmsk exon 17321171 17321362 752 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "6085"; repFamily "ERV1"; repLeft "5896"; repStart "-444"; chr6 rmsk exon 17321688 17326937 18048 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "5333"; repFamily "ERV1"; repLeft "74"; repStart "-1196"; chr6 rmsk exon 17326976 17326988 1545 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "499"; repStart "0"; chr6 rmsk exon 17326989 17327163 987 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "98"; repStart "0"; chr6 rmsk exon 17327164 17327331 1294 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "88"; repStart "-246"; chr6 rmsk exon 17327332 17327379 987 - . gene_id "HERVFH21_6p22.3"; transcript_id "HERVFH21_6p22.3"; locus "HERVFH21_6p22.3"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0016"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "341"; repStart "0"; ### ERVLB4_6p22.3a ### chr6 rmsk gene 17340186 17342723 . + . gene_id "ERVLB4_6p22.3a"; transcript_id "ERVLB4_6p22.3a"; locus "ERVLB4_6p22.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0688"; model_cov "1553"; model_pct "27.2"; chr6 rmsk exon 17340186 17340221 7591 + . gene_id "ERVLB4_6p22.3a"; transcript_id "ERVLB4_6p22.3a"; locus "ERVLB4_6p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0688"; repClass "LTR"; repEnd "27"; repFamily "ERVL"; repLeft "-5687"; repStart "1"; chr6 rmsk exon 17340516 17340780 7591 + . gene_id "ERVLB4_6p22.3a"; transcript_id "ERVLB4_6p22.3a"; locus "ERVLB4_6p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0688"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "-5424"; repStart "28"; chr6 rmsk exon 17341506 17342723 7591 + . gene_id "ERVLB4_6p22.3a"; transcript_id "ERVLB4_6p22.3a"; locus "ERVLB4_6p22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0688"; repClass "LTR"; repEnd "1556"; repFamily "ERVL"; repLeft "-4158"; repStart "291"; ### MER4_6p22.3a ### chr6 rmsk gene 17561125 17566466 . - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0312"; model_cov "3748"; model_pct "56.8"; chr6 rmsk exon 17561125 17561578 3166 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0312"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 17561590 17563471 17381 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "4667"; repStart "-5"; chr6 rmsk exon 17563766 17564587 17381 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "4666"; repFamily "ERV1"; repLeft "3837"; repStart "-1932"; chr6 rmsk exon 17564555 17564844 9594 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3450"; repStart "-2917"; chr6 rmsk exon 17565136 17565306 9594 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "3449"; repFamily "ERV1"; repLeft "3294"; repStart "-3149"; chr6 rmsk exon 17565620 17565966 9594 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "3293"; repFamily "ERV1"; repLeft "2932"; repStart "-3305"; chr6 rmsk exon 17566256 17566466 9594 - . gene_id "MER4_6p22.3a"; transcript_id "MER4_6p22.3a"; locus "MER4_6p22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0312"; repClass "LTR"; repEnd "2931"; repFamily "ERV1"; repLeft "2685"; repStart "-3667"; ### MER4_6p22.3b ### chr6 rmsk gene 17566698 17570361 . - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0313"; model_cov "2532"; model_pct "38.4"; chr6 rmsk exon 17566698 17567741 9594 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "2931"; repFamily "ERV1"; repLeft "1704"; repStart "-3667"; chr6 rmsk exon 17568041 17568343 9594 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "1456"; repFamily "ERV1"; repLeft "1113"; repStart "-5142"; chr6 rmsk exon 17568374 17568493 9594 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "994"; repStart "-5486"; chr6 rmsk exon 17568492 17568530 336 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "848"; repStart "-5712"; chr6 rmsk exon 17568659 17569100 2816 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "221"; repStart "-5790"; chr6 rmsk exon 17569399 17569595 2816 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0313"; repClass "LTR"; repEnd "220"; repFamily "ERV1"; repLeft "1"; repStart "-6378"; chr6 rmsk exon 17569598 17569883 3384 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0313"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "186"; repStart "0"; chr6 rmsk exon 17570180 17570361 3384 - . gene_id "MER4_6p22.3b"; transcript_id "MER4_6p22.3b"; locus "MER4_6p22.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0313"; repClass "LTR"; repEnd "185"; repFamily "ERV1"; repLeft "1"; repStart "-287"; ### HERVH_6p22.3c ### chr6 rmsk gene 18754144 18759870 . - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0544"; model_cov "4906"; model_pct "63.6"; chr6 rmsk exon 18754144 18754534 2518 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 18754535 18754911 2268 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 18754912 18755127 1285 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 18755129 18755762 4136 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 18755765 18756267 3380 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 18756258 18756405 854 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 18756400 18759477 18818 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 18759480 18759870 2523 - . gene_id "HERVH_6p22.3c"; transcript_id "HERVH_6p22.3c"; locus "HERVH_6p22.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0544"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_6p22.3b ### chr6 rmsk gene 19363924 19367993 . - . gene_id "ERV316A3_6p22.3b"; transcript_id "ERV316A3_6p22.3b"; locus "ERV316A3_6p22.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1182"; model_cov "3378"; model_pct "64.6"; chr6 rmsk exon 19363924 19364329 1624 - . gene_id "ERV316A3_6p22.3b"; transcript_id "ERV316A3_6p22.3b"; locus "ERV316A3_6p22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1182"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "4"; repStart "-12"; chr6 rmsk exon 19364335 19365659 2839 - . gene_id "ERV316A3_6p22.3b"; transcript_id "ERV316A3_6p22.3b"; locus "ERV316A3_6p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1182"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "3894"; repStart "-2"; chr6 rmsk exon 19365657 19367680 3647 - . gene_id "ERV316A3_6p22.3b"; transcript_id "ERV316A3_6p22.3b"; locus "ERV316A3_6p22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1182"; repClass "LTR"; repEnd "2219"; repFamily "ERVL"; repLeft "171"; repStart "-3007"; chr6 rmsk exon 19367928 19367993 1060 - . gene_id "ERV316A3_6p22.3b"; transcript_id "ERV316A3_6p22.3b"; locus "ERV316A3_6p22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1182"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "382"; repStart "0"; ### ERV316A3_6p22.3c ### chr6 rmsk gene 19372094 19375716 . + . gene_id "ERV316A3_6p22.3c"; transcript_id "ERV316A3_6p22.3c"; locus "ERV316A3_6p22.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1183"; model_cov "3147"; model_pct "60.2"; chr6 rmsk exon 19372094 19372233 495 + . gene_id "ERV316A3_6p22.3c"; transcript_id "ERV316A3_6p22.3c"; locus "ERV316A3_6p22.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1183"; repClass "LTR"; repEnd "139"; repFamily "ERVL"; repLeft "-341"; repStart "5"; chr6 rmsk exon 19372250 19372439 347 + . gene_id "ERV316A3_6p22.3c"; transcript_id "ERV316A3_6p22.3c"; locus "ERV316A3_6p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1183"; repClass "LTR"; repEnd "1964"; repFamily "ERVL"; repLeft "-3262"; repStart "1686"; chr6 rmsk exon 19372426 19375232 7799 + . gene_id "ERV316A3_6p22.3c"; transcript_id "ERV316A3_6p22.3c"; locus "ERV316A3_6p22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1183"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2357"; chr6 rmsk exon 19375239 19375716 1790 + . gene_id "ERV316A3_6p22.3c"; transcript_id "ERV316A3_6p22.3c"; locus "ERV316A3_6p22.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1183"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "8"; ### HERVL_6p22.3a ### chr6 rmsk gene 19401579 19406907 . - . gene_id "HERVL_6p22.3a"; transcript_id "HERVL_6p22.3a"; locus "HERVL_6p22.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0576"; model_cov "4971"; model_pct "87.9"; chr6 rmsk exon 19401579 19406518 38896 - . gene_id "HERVL_6p22.3a"; transcript_id "HERVL_6p22.3a"; locus "HERVL_6p22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0576"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "1"; repStart "-682"; chr6 rmsk exon 19406671 19406907 1614 - . gene_id "HERVL_6p22.3a"; transcript_id "HERVL_6p22.3a"; locus "HERVL_6p22.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0576"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "1"; repStart "-198"; ### HERVH_6p22.3d ### chr6 rmsk gene 19539462 19544813 . + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0545"; model_cov "5081"; model_pct "65.9"; chr6 rmsk exon 19539462 19542302 15295 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "25"; chr6 rmsk exon 19542300 19543154 6034 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr6 rmsk exon 19543157 19543818 4020 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 19543820 19544034 1331 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 19544035 19544411 2196 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 19544412 19544813 2546 + . gene_id "HERVH_6p22.3d"; transcript_id "HERVH_6p22.3d"; locus "HERVH_6p22.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0545"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_6p22.3b ### chr6 rmsk gene 20603124 20605316 . + . gene_id "ERVLE_6p22.3b"; transcript_id "ERVLE_6p22.3b"; locus "ERVLE_6p22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1562"; model_cov "2046"; model_pct "36.1"; chr6 rmsk exon 20603124 20603767 2556 + . gene_id "ERVLE_6p22.3b"; transcript_id "ERVLE_6p22.3b"; locus "ERVLE_6p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1562"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1877"; repStart "3138"; chr6 rmsk exon 20603953 20605316 5367 + . gene_id "ERVLE_6p22.3b"; transcript_id "ERVLE_6p22.3b"; locus "ERVLE_6p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1562"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-491"; repStart "3782"; ### HERVL32_6p22.3 ### chr6 rmsk gene 21355378 21361143 . - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0023"; model_cov "2573"; model_pct "75.3"; chr6 rmsk exon 21355378 21355805 2553 - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0023"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "16"; repStart "-3"; chr6 rmsk exon 21355824 21356025 885 - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0023"; repClass "LTR"; repEnd "3417"; repFamily "ERVL"; repLeft "3215"; repStart "-1"; chr6 rmsk exon 21358194 21358305 1211 - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0023"; repClass "LTR"; repEnd "1819"; repFamily "ERVL"; repLeft "1710"; repStart "-1599"; chr6 rmsk exon 21358618 21358633 1211 - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0023"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1708"; repStart "-1709"; chr6 rmsk exon 21358931 21361143 7187 - . gene_id "HERVL32_6p22.3"; transcript_id "HERVL32_6p22.3"; locus "HERVL32_6p22.3"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0023"; repClass "LTR"; repEnd "1707"; repFamily "ERVL"; repLeft "-554"; repStart "-1711"; ### HERVH_6p22.3e ### chr6 rmsk gene 21361492 21367257 . - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0546"; model_cov "4916"; model_pct "63.7"; chr6 rmsk exon 21361492 21361942 3589 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 21361943 21362321 2456 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 21362320 21362536 1466 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 21362538 21363198 4415 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 21363201 21363705 3578 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 21363696 21363845 1011 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 21363825 21366814 21352 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 21366817 21367257 3434 - . gene_id "HERVH_6p22.3e"; transcript_id "HERVH_6p22.3e"; locus "HERVH_6p22.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0546"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3B_6p22.3a ### chr6 rmsk gene 22370432 22379334 . + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0063"; model_cov "6071"; model_pct "81.8"; chr6 rmsk exon 22370432 22370632 1255 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "445"; chr6 rmsk exon 22370633 22370729 381 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "1"; chr6 rmsk exon 22370716 22370873 764 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "410"; chr6 rmsk exon 22370882 22372718 11969 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "2918"; repFamily "ERV1"; repLeft "-4500"; repStart "747"; chr6 rmsk exon 22373106 22373912 11969 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "2919"; chr6 rmsk exon 22373912 22376175 13687 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "7107"; repFamily "ERV1"; repLeft "-311"; repStart "4719"; chr6 rmsk exon 22378498 22378822 2022 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "7104"; chr6 rmsk exon 22378824 22379334 3060 + . gene_id "HUERSP3B_6p22.3a"; transcript_id "HUERSP3B_6p22.3a"; locus "HUERSP3B_6p22.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0063"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "-83"; repStart "42"; ### HERVL40_6p22.3 ### chr6 rmsk gene 22774773 22781446 . - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0173"; model_cov "2711"; model_pct "49.0"; chr6 rmsk exon 22774773 22775050 1302 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5246"; repStart "0"; chr6 rmsk exon 22776086 22776959 3495 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "3377"; repStart "-1237"; chr6 rmsk exon 22776952 22777847 2708 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "2998"; repFamily "ERVL"; repLeft "2051"; repStart "-2532"; chr6 rmsk exon 22777859 22778236 1031 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "1606"; repFamily "ERVL"; repLeft "1228"; repStart "-3924"; chr6 rmsk exon 22780516 22780677 1031 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "1227"; repFamily "ERVL"; repLeft "1041"; repStart "-4303"; chr6 rmsk exon 22780999 22781446 2023 - . gene_id "HERVL40_6p22.3"; transcript_id "HERVL40_6p22.3"; locus "HERVL40_6p22.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0173"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "62"; repStart "-8"; ### ERVLE_6p22.3c ### chr6 rmsk gene 23039563 23043479 . + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1564"; model_cov "2312"; model_pct "40.8"; chr6 rmsk exon 23039563 23039726 302 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-271"; repStart "217"; chr6 rmsk exon 23039738 23039946 625 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "451"; chr6 rmsk exon 23039948 23040151 3750 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "121"; repFamily "ERVL"; repLeft "-5546"; repStart "-86"; chr6 rmsk exon 23040423 23041488 3750 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "1283"; repFamily "ERVL"; repLeft "-4384"; repStart "174"; chr6 rmsk exon 23041523 23041634 3648 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "-4038"; repStart "1520"; chr6 rmsk exon 23042096 23042918 3648 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "2517"; repFamily "ERVL"; repLeft "-3150"; repStart "1630"; chr6 rmsk exon 23042922 23043479 800 + . gene_id "ERVLE_6p22.3c"; transcript_id "ERVLE_6p22.3c"; locus "ERVLE_6p22.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1564"; repClass "LTR"; repEnd "657"; repFamily "ERVL"; repLeft "-6"; repStart "14"; ### HUERSP3B_6p22.3b ### chr6 rmsk gene 23107998 23113276 . - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0064"; model_cov "3568"; model_pct "48.1"; chr6 rmsk exon 23107998 23108580 3493 - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0064"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 23109116 23109457 1817 - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0064"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "6582"; repStart "-473"; chr6 rmsk exon 23109455 23109677 17012 - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0064"; repClass "LTR"; repEnd "6088"; repFamily "ERV1"; repLeft "5891"; repStart "-1330"; chr6 rmsk exon 23110001 23112655 17765 - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0064"; repClass "LTR"; repEnd "5890"; repFamily "ERV1"; repLeft "3257"; repStart "-1528"; chr6 rmsk exon 23112956 23113276 17765 - . gene_id "HUERSP3B_6p22.3b"; transcript_id "HUERSP3B_6p22.3b"; locus "HUERSP3B_6p22.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0064"; repClass "LTR"; repEnd "3257"; repFamily "ERV1"; repLeft "2882"; repStart "-4161"; ### HUERSP3B_6p22.3c ### chr6 rmsk gene 23113704 23116867 . - . gene_id "HUERSP3B_6p22.3c"; transcript_id "HUERSP3B_6p22.3c"; locus "HUERSP3B_6p22.3c"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0065"; model_cov "2875"; model_pct "38.8"; chr6 rmsk exon 23113704 23115638 17765 - . gene_id "HUERSP3B_6p22.3c"; transcript_id "HUERSP3B_6p22.3c"; locus "HUERSP3B_6p22.3c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0065"; repClass "LTR"; repEnd "3257"; repFamily "ERV1"; repLeft "987"; repStart "-4161"; chr6 rmsk exon 23115668 23116290 17765 - . gene_id "HUERSP3B_6p22.3c"; transcript_id "HUERSP3B_6p22.3c"; locus "HUERSP3B_6p22.3c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0065"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "5"; repStart "-6808"; chr6 rmsk exon 23116296 23116867 3474 - . gene_id "HUERSP3B_6p22.3c"; transcript_id "HUERSP3B_6p22.3c"; locus "HUERSP3B_6p22.3c"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0065"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HERVL_6p22.3b ### chr6 rmsk gene 23155783 23160438 . + . gene_id "HERVL_6p22.3b"; transcript_id "HERVL_6p22.3b"; locus "HERVL_6p22.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0577"; model_cov "3667"; model_pct "64.9"; chr6 rmsk exon 23155783 23159414 28466 + . gene_id "HERVL_6p22.3b"; transcript_id "HERVL_6p22.3b"; locus "HERVL_6p22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0577"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1987"; chr6 rmsk exon 23159415 23159559 3072 + . gene_id "HERVL_6p22.3b"; transcript_id "HERVL_6p22.3b"; locus "HERVL_6p22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0577"; repClass "LTR"; repEnd "145"; repFamily "ERVL"; repLeft "-299"; repStart "1"; chr6 rmsk exon 23160068 23160438 3072 + . gene_id "HERVL_6p22.3b"; transcript_id "HERVL_6p22.3b"; locus "HERVL_6p22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0577"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "35"; ### HML5_6p22.3 ### chr6 rmsk gene 23160944 23168686 . + . gene_id "HML5_6p22.3"; transcript_id "HML5_6p22.3"; locus "HML5_6p22.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0043"; model_cov "6836"; model_pct "100.0"; chr6 rmsk exon 23160944 23161417 3264 + . gene_id "HML5_6p22.3"; transcript_id "HML5_6p22.3"; locus "HML5_6p22.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0043"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 23161418 23168212 49621 + . gene_id "HML5_6p22.3"; transcript_id "HML5_6p22.3"; locus "HML5_6p22.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0043"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 23168216 23168686 3237 + . gene_id "HML5_6p22.3"; transcript_id "HML5_6p22.3"; locus "HML5_6p22.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0043"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "4"; ### ERV316A3_6p22.3d ### chr6 rmsk gene 23241607 23243932 . + . gene_id "ERV316A3_6p22.3d"; transcript_id "ERV316A3_6p22.3d"; locus "ERV316A3_6p22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1186"; model_cov "1885"; model_pct "36.1"; chr6 rmsk exon 23241607 23242631 4313 + . gene_id "ERV316A3_6p22.3d"; transcript_id "ERV316A3_6p22.3d"; locus "ERV316A3_6p22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1186"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "-812"; repStart "3316"; chr6 rmsk exon 23242929 23243722 4313 + . gene_id "ERV316A3_6p22.3d"; transcript_id "ERV316A3_6p22.3d"; locus "ERV316A3_6p22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1186"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "-24"; repStart "4415"; chr6 rmsk exon 23243747 23243932 425 + . gene_id "ERV316A3_6p22.3d"; transcript_id "ERV316A3_6p22.3d"; locus "ERV316A3_6p22.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1186"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "-234"; repStart "17"; ### ERV316A3_6p22.3e ### chr6 rmsk gene 23593549 23599770 . - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1188"; model_cov "3674"; model_pct "70.3"; chr6 rmsk exon 23593549 23593823 577 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "6"; repStart "-145"; chr6 rmsk exon 23594211 23594591 866 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "4745"; repStart "-84"; chr6 rmsk exon 23594590 23595958 2552 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "4618"; repFamily "ERVL"; repLeft "3176"; repStart "-608"; chr6 rmsk exon 23596138 23596291 344 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "3321"; repFamily "ERVL"; repLeft "3167"; repStart "-1905"; chr6 rmsk exon 23596303 23596747 753 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "2331"; repFamily "ERVL"; repLeft "1883"; repStart "-2895"; chr6 rmsk exon 23596751 23597104 963 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "2174"; repFamily "ERVL"; repLeft "1827"; repStart "-3052"; chr6 rmsk exon 23597510 23597772 489 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "1514"; repFamily "ERVL"; repLeft "1240"; repStart "-3712"; chr6 rmsk exon 23598471 23599066 1177 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "1170"; repFamily "ERVL"; repLeft "558"; repStart "-4056"; chr6 rmsk exon 23599368 23599770 1091 - . gene_id "ERV316A3_6p22.3e"; transcript_id "ERV316A3_6p22.3e"; locus "ERV316A3_6p22.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1188"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### ERVLE_6p22.3d ### chr6 rmsk gene 23637272 23641325 . - . gene_id "ERVLE_6p22.3d"; transcript_id "ERVLE_6p22.3d"; locus "ERVLE_6p22.3d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1565"; model_cov "3212"; model_pct "56.7"; chr6 rmsk exon 23637272 23637690 957 - . gene_id "ERVLE_6p22.3d"; transcript_id "ERVLE_6p22.3d"; locus "ERVLE_6p22.3d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1565"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "3"; repStart "-192"; chr6 rmsk exon 23637694 23637961 657 - . gene_id "ERVLE_6p22.3d"; transcript_id "ERVLE_6p22.3d"; locus "ERVLE_6p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1565"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "5329"; repStart "-2"; chr6 rmsk exon 23638113 23639694 9587 - . gene_id "ERVLE_6p22.3d"; transcript_id "ERVLE_6p22.3d"; locus "ERVLE_6p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1565"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "3497"; repStart "-550"; chr6 rmsk exon 23640145 23641325 9587 - . gene_id "ERVLE_6p22.3d"; transcript_id "ERVLE_6p22.3d"; locus "ERVLE_6p22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1565"; repClass "LTR"; repEnd "3496"; repFamily "ERVL"; repLeft "2240"; repStart "-2171"; ### ERVLB4_6p22.3b ### chr6 rmsk gene 23739284 23743638 . - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0691"; model_cov "3069"; model_pct "53.7"; chr6 rmsk exon 23739284 23739506 678 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "1"; repStart "-438"; chr6 rmsk exon 23739511 23739619 251 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "5590"; repStart "-4"; chr6 rmsk exon 23740107 23740383 1043 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "5033"; repStart "-379"; chr6 rmsk exon 23740700 23741256 2108 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "3781"; repFamily "ERVL"; repLeft "3234"; repStart "-1933"; chr6 rmsk exon 23741270 23741663 1480 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "3014"; repFamily "ERVL"; repLeft "2612"; repStart "-2700"; chr6 rmsk exon 23741685 23742444 2884 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "2564"; repFamily "ERVL"; repLeft "1750"; repStart "-3150"; chr6 rmsk exon 23742551 23743349 1402 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "985"; repFamily "ERVL"; repLeft "101"; repStart "-4729"; chr6 rmsk exon 23743424 23743638 700 - . gene_id "ERVLB4_6p22.3b"; transcript_id "ERVLB4_6p22.3b"; locus "ERVLB4_6p22.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0691"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "433"; repStart "-2"; ### ERVLE_6p22.3e ### chr6 rmsk gene 23834760 23835442 . + . gene_id "ERVLE_6p22.3e"; transcript_id "ERVLE_6p22.3e"; locus "ERVLE_6p22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1566"; model_cov "569"; model_pct "10.0"; chr6 rmsk exon 23834760 23835162 984 + . gene_id "ERVLE_6p22.3e"; transcript_id "ERVLE_6p22.3e"; locus "ERVLE_6p22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1566"; repClass "LTR"; repEnd "5052"; repFamily "ERVL"; repLeft "-615"; repStart "4645"; chr6 rmsk exon 23835285 23835442 318 + . gene_id "ERVLE_6p22.3e"; transcript_id "ERVLE_6p22.3e"; locus "ERVLE_6p22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1566"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "-319"; repStart "5186"; ### ERV316A3_6p22.3f ### chr6 rmsk gene 24163042 24166457 . - . gene_id "ERV316A3_6p22.3f"; transcript_id "ERV316A3_6p22.3f"; locus "ERV316A3_6p22.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1189"; model_cov "1865"; model_pct "35.7"; chr6 rmsk exon 24163042 24164672 1692 - . gene_id "ERV316A3_6p22.3f"; transcript_id "ERV316A3_6p22.3f"; locus "ERV316A3_6p22.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1189"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "419"; repStart "-3135"; chr6 rmsk exon 24165649 24165841 603 - . gene_id "ERV316A3_6p22.3f"; transcript_id "ERV316A3_6p22.3f"; locus "ERV316A3_6p22.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1189"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "269"; repStart "-4764"; chr6 rmsk exon 24165882 24166258 727 - . gene_id "ERV316A3_6p22.3f"; transcript_id "ERV316A3_6p22.3f"; locus "ERV316A3_6p22.3f"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1189"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "109"; repStart "-2"; chr6 rmsk exon 24166387 24166457 268 - . gene_id "ERV316A3_6p22.3f"; transcript_id "ERV316A3_6p22.3f"; locus "ERV316A3_6p22.3f"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1189"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "10"; repStart "-377"; ### MER4_6p22.3c ### chr6 rmsk gene 24669089 24674396 . - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0314"; model_cov "3377"; model_pct "51.2"; chr6 rmsk exon 24669089 24669533 3256 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0314"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr6 rmsk exon 24669546 24670953 16460 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5118"; repStart "0"; chr6 rmsk exon 24671625 24672360 16460 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "5117"; repFamily "ERV1"; repLeft "4435"; repStart "-1481"; chr6 rmsk exon 24672662 24673221 16460 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "4434"; repFamily "ERV1"; repLeft "3837"; repStart "-2164"; chr6 rmsk exon 24673221 24673270 295 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3632"; repStart "-2917"; chr6 rmsk exon 24673275 24673368 1437 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "3535"; repFamily "ERV1"; repLeft "3451"; repStart "-3063"; chr6 rmsk exon 24673651 24674052 1437 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "3450"; repFamily "ERV1"; repLeft "3005"; repStart "-3148"; chr6 rmsk exon 24674356 24674396 1437 - . gene_id "MER4_6p22.3c"; transcript_id "MER4_6p22.3c"; locus "MER4_6p22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0314"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "2964"; repStart "-3594"; ### HERVW_6p22.3 ### chr6 rmsk gene 24676688 24683100 . - . gene_id "HERVW_6p22.3"; transcript_id "HERVW_6p22.3"; locus "HERVW_6p22.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0131"; model_cov "5722"; model_pct "66.3"; chr6 rmsk exon 24676688 24682292 46726 - . gene_id "HERVW_6p22.3"; transcript_id "HERVW_6p22.3"; locus "HERVW_6p22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0131"; repClass "LTR"; repEnd "5723"; repFamily "ERV1"; repLeft "1"; repStart "-2903"; chr6 rmsk exon 24682293 24683100 6133 - . gene_id "HERVW_6p22.3"; transcript_id "HERVW_6p22.3"; locus "HERVW_6p22.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0131"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_6p22.3d ### chr6 rmsk gene 25128933 25136513 . + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0316"; model_cov "5939"; model_pct "90.0"; chr6 rmsk exon 25128933 25129383 3304 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0316"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 25129385 25129988 2310 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr6 rmsk exon 25129977 25130043 421 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "807"; repFamily "ERV1"; repLeft "-5791"; repStart "751"; chr6 rmsk exon 25130229 25131330 7391 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "2125"; repFamily "ERV1"; repLeft "-4473"; repStart "993"; chr6 rmsk exon 25131655 25131995 7391 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "2130"; chr6 rmsk exon 25132246 25132691 2609 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "3220"; repFamily "ERV1"; repLeft "-3378"; repStart "2737"; chr6 rmsk exon 25133003 25133412 2609 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3221"; chr6 rmsk exon 25133412 25136073 15475 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0316"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chr6 rmsk exon 25136082 25136513 2919 + . gene_id "MER4_6p22.3d"; transcript_id "MER4_6p22.3d"; locus "MER4_6p22.3d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0316"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6p22.2a ### chr6 rmsk gene 25217330 25218207 . + . gene_id "ERVLE_6p22.2a"; transcript_id "ERVLE_6p22.2a"; locus "ERVLE_6p22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1569"; model_cov "1080"; model_pct "19.1"; chr6 rmsk exon 25217330 25218207 998 + . gene_id "ERVLE_6p22.2a"; transcript_id "ERVLE_6p22.2a"; locus "ERVLE_6p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1569"; repClass "LTR"; repEnd "5086"; repFamily "ERVL"; repLeft "-581"; repStart "4006"; ### LTR46_6p22.2 ### chr6 rmsk gene 25835820 25838436 . - . gene_id "LTR46_6p22.2"; transcript_id "LTR46_6p22.2"; locus "LTR46_6p22.2"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0005"; model_cov "3320"; model_pct "47.5"; chr6 rmsk exon 25835820 25835888 1937 - . gene_id "LTR46_6p22.2"; transcript_id "LTR46_6p22.2"; locus "LTR46_6p22.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0005"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "407"; repStart "0"; chr6 rmsk exon 25835920 25836288 1937 - . gene_id "LTR46_6p22.2"; transcript_id "LTR46_6p22.2"; locus "LTR46_6p22.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0005"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "1"; repStart "-54"; chr6 rmsk exon 25836289 25836601 2181 - . gene_id "LTR46_6p22.2"; transcript_id "LTR46_6p22.2"; locus "LTR46_6p22.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0005"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6674"; repStart "0"; chr6 rmsk exon 25836704 25838436 9739 - . gene_id "LTR46_6p22.2"; transcript_id "LTR46_6p22.2"; locus "LTR46_6p22.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0005"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "3530"; repStart "-446"; ### ERV316A3_6p22.2 ### chr6 rmsk gene 25838435 25840551 . - . gene_id "ERV316A3_6p22.2"; transcript_id "ERV316A3_6p22.2"; locus "ERV316A3_6p22.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1190"; model_cov "1036"; model_pct "19.8"; chr6 rmsk exon 25838435 25839182 1233 - . gene_id "ERV316A3_6p22.2"; transcript_id "ERV316A3_6p22.2"; locus "ERV316A3_6p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1190"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "2135"; repStart "-2391"; chr6 rmsk exon 25839598 25839922 359 - . gene_id "ERV316A3_6p22.2"; transcript_id "ERV316A3_6p22.2"; locus "ERV316A3_6p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1190"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "171"; repStart "-4719"; chr6 rmsk exon 25840117 25840551 586 - . gene_id "ERV316A3_6p22.2"; transcript_id "ERV316A3_6p22.2"; locus "ERV316A3_6p22.2"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1190"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_6p22.2 ### chr6 rmsk gene 25951314 25955011 . - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0207"; model_cov "2609"; model_pct "43.9"; chr6 rmsk exon 25951314 25951813 3752 - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0207"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "2"; repStart "-129"; chr6 rmsk exon 25951814 25952005 1413 - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0207"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5753"; repStart "0"; chr6 rmsk exon 25952073 25952670 2653 - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0207"; repClass "LTR"; repEnd "2586"; repFamily "ERV1"; repLeft "1944"; repStart "-3360"; chr6 rmsk exon 25952650 25954376 11541 - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0207"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "1"; repStart "-4171"; chr6 rmsk exon 25954377 25955011 4663 - . gene_id "MER41_6p22.2"; transcript_id "MER41_6p22.2"; locus "MER41_6p22.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0207"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_6p22.2 ### chr6 rmsk gene 26075040 26081760 . + . gene_id "HARLEQUIN_6p22.2"; transcript_id "HARLEQUIN_6p22.2"; locus "HARLEQUIN_6p22.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0083"; model_cov "5915"; model_pct "85.8"; chr6 rmsk exon 26075040 26075407 2941 + . gene_id "HARLEQUIN_6p22.2"; transcript_id "HARLEQUIN_6p22.2"; locus "HARLEQUIN_6p22.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0083"; repClass "LTR"; repEnd "373"; repFamily "ERV1"; repLeft "-90"; repStart "1"; chr6 rmsk exon 26075409 26075626 1766 + . gene_id "HARLEQUIN_6p22.2"; transcript_id "HARLEQUIN_6p22.2"; locus "HARLEQUIN_6p22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0083"; repClass "LTR"; repEnd "-708"; repFamily "ERV1"; repLeft "-7604"; repStart "-925"; chr6 rmsk exon 26075622 26081311 45714 + . gene_id "HARLEQUIN_6p22.2"; transcript_id "HARLEQUIN_6p22.2"; locus "HARLEQUIN_6p22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0083"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1198"; chr6 rmsk exon 26081312 26081760 3471 + . gene_id "HARLEQUIN_6p22.2"; transcript_id "HARLEQUIN_6p22.2"; locus "HARLEQUIN_6p22.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0083"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_6p22.2 ### chr6 rmsk gene 26257219 26260461 . + . gene_id "HML5_6p22.2"; transcript_id "HML5_6p22.2"; locus "HML5_6p22.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0044"; model_cov "2089"; model_pct "30.6"; chr6 rmsk exon 26257219 26257617 2629 + . gene_id "HML5_6p22.2"; transcript_id "HML5_6p22.2"; locus "HML5_6p22.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0044"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "68"; chr6 rmsk exon 26257675 26259062 9312 + . gene_id "HML5_6p22.2"; transcript_id "HML5_6p22.2"; locus "HML5_6p22.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0044"; repClass "LTR"; repEnd "1464"; repFamily "ERVK"; repLeft "-5373"; repStart "81"; chr6 rmsk exon 26259073 26260008 4952 + . gene_id "HML5_6p22.2"; transcript_id "HML5_6p22.2"; locus "HML5_6p22.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0044"; repClass "LTR"; repEnd "5293"; repFamily "ERVK"; repLeft "-1544"; repStart "4587"; chr6 rmsk exon 26260009 26260461 2925 + . gene_id "HML5_6p22.2"; transcript_id "HML5_6p22.2"; locus "HML5_6p22.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0044"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_6p22.2 ### chr6 rmsk gene 26288022 26296266 . - . gene_id "HML6_6p22.2"; transcript_id "HML6_6p22.2"; locus "HML6_6p22.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0039"; model_cov "7198"; model_pct "99.9"; chr6 rmsk exon 26288022 26288434 2320 - . gene_id "HML6_6p22.2"; transcript_id "HML6_6p22.2"; locus "HML6_6p22.2"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0039"; repClass "LTR"; repEnd "416"; repFamily "ERVK"; repLeft "1"; repStart "-16"; chr6 rmsk exon 26288437 26295005 41614 - . gene_id "HML6_6p22.2"; transcript_id "HML6_6p22.2"; locus "HML6_6p22.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0039"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "593"; repStart "-2"; chr6 rmsk exon 26295319 26295836 41614 - . gene_id "HML6_6p22.2"; transcript_id "HML6_6p22.2"; locus "HML6_6p22.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0039"; repClass "LTR"; repEnd "592"; repFamily "ERVK"; repLeft "1"; repStart "-6610"; chr6 rmsk exon 26295852 26296266 2479 - . gene_id "HML6_6p22.2"; transcript_id "HML6_6p22.2"; locus "HML6_6p22.2"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0039"; repClass "LTR"; repEnd "416"; repFamily "ERVK"; repLeft "1"; repStart "-16"; ### HERV3_6p22.2 ### chr6 rmsk gene 26343462 26344951 . + . gene_id "HERV3_6p22.2"; transcript_id "HERV3_6p22.2"; locus "HERV3_6p22.2"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0022"; model_cov "1189"; model_pct "14.1"; chr6 rmsk exon 26343462 26344323 604 + . gene_id "HERV3_6p22.2"; transcript_id "HERV3_6p22.2"; locus "HERV3_6p22.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0022"; repClass "LTR"; repEnd "4340"; repFamily "ERV1"; repLeft "-4086"; repStart "3502"; chr6 rmsk exon 26344633 26344951 604 + . gene_id "HERV3_6p22.2"; transcript_id "HERV3_6p22.2"; locus "HERV3_6p22.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0022"; repClass "LTR"; repEnd "6579"; repFamily "ERV1"; repLeft "-1847"; repStart "6228"; ### MER101_6p22.2 ### chr6 rmsk gene 26992582 26994782 . - . gene_id "MER101_6p22.2"; transcript_id "MER101_6p22.2"; locus "MER101_6p22.2"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0176"; model_cov "1511"; model_pct "22.8"; chr6 rmsk exon 26992582 26994124 1172 - . gene_id "MER101_6p22.2"; transcript_id "MER101_6p22.2"; locus "MER101_6p22.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0176"; repClass "LTR"; repEnd "4089"; repFamily "ERV1"; repLeft "2677"; repStart "-2550"; chr6 rmsk exon 26994291 26994390 476 - . gene_id "MER101_6p22.2"; transcript_id "MER101_6p22.2"; locus "MER101_6p22.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0176"; repClass "LTR"; repEnd "2506"; repFamily "ERV1"; repLeft "2407"; repStart "-4133"; chr6 rmsk exon 26994658 26994782 721 - . gene_id "MER101_6p22.2"; transcript_id "MER101_6p22.2"; locus "MER101_6p22.2"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0176"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "325"; repStart "0"; ### ERVLE_6p22.2b ### chr6 rmsk gene 27044303 27046624 . + . gene_id "ERVLE_6p22.2b"; transcript_id "ERVLE_6p22.2b"; locus "ERVLE_6p22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1572"; model_cov "921"; model_pct "16.3"; chr6 rmsk exon 27044303 27044598 1005 + . gene_id "ERVLE_6p22.2b"; transcript_id "ERVLE_6p22.2b"; locus "ERVLE_6p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1572"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "-4444"; repStart "919"; chr6 rmsk exon 27044673 27045103 1874 + . gene_id "ERVLE_6p22.2b"; transcript_id "ERVLE_6p22.2b"; locus "ERVLE_6p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1572"; repClass "LTR"; repEnd "1830"; repFamily "ERVL"; repLeft "-3837"; repStart "1376"; chr6 rmsk exon 27046465 27046624 1874 + . gene_id "ERVLE_6p22.2b"; transcript_id "ERVLE_6p22.2b"; locus "ERVLE_6p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1572"; repClass "LTR"; repEnd "1994"; repFamily "ERVL"; repLeft "-3673"; repStart "1831"; ### ERVLE_6p22.1a ### chr6 rmsk gene 27128640 27129713 . - . gene_id "ERVLE_6p22.1a"; transcript_id "ERVLE_6p22.1a"; locus "ERVLE_6p22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1573"; model_cov "800"; model_pct "14.1"; chr6 rmsk exon 27128640 27128925 437 - . gene_id "ERVLE_6p22.1a"; transcript_id "ERVLE_6p22.1a"; locus "ERVLE_6p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1573"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "4540"; repStart "-843"; chr6 rmsk exon 27129207 27129713 1273 - . gene_id "ERVLE_6p22.1a"; transcript_id "ERVLE_6p22.1a"; locus "ERVLE_6p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1573"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "3646"; repStart "-1505"; ### ERVLB4_6p22.1a ### chr6 rmsk gene 27153618 27154593 . - . gene_id "ERVLB4_6p22.1a"; transcript_id "ERVLB4_6p22.1a"; locus "ERVLB4_6p22.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0692"; model_cov "644"; model_pct "11.3"; chr6 rmsk exon 27153618 27153686 947 - . gene_id "ERVLB4_6p22.1a"; transcript_id "ERVLB4_6p22.1a"; locus "ERVLB4_6p22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0692"; repClass "LTR"; repEnd "5329"; repFamily "ERVL"; repLeft "5265"; repStart "-385"; chr6 rmsk exon 27154010 27154593 947 - . gene_id "ERVLB4_6p22.1a"; transcript_id "ERVLB4_6p22.1a"; locus "ERVLB4_6p22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0692"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "4684"; repStart "-450"; ### HERVKC4_6p22.1 ### chr6 rmsk gene 27187521 27196279 . + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0006"; model_cov "5258"; model_pct "99.9"; chr6 rmsk exon 27187521 27188070 3832 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr6 rmsk exon 27188071 27190816 20582 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "2671"; repFamily "ERVK"; repLeft "-2591"; repStart "1"; chr6 rmsk exon 27191424 27191576 20582 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "2822"; repFamily "ERVK"; repLeft "-2440"; repStart "2672"; chr6 rmsk exon 27191889 27192013 20582 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "2936"; repFamily "ERVK"; repLeft "-2326"; repStart "2823"; chr6 rmsk exon 27192219 27194239 14059 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "4971"; repFamily "ERVK"; repLeft "-291"; repStart "2924"; chr6 rmsk exon 27195434 27195713 1865 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "5244"; repFamily "ERVK"; repLeft "-18"; repStart "4966"; chr6 rmsk exon 27195722 27196279 3867 + . gene_id "HERVKC4_6p22.1"; transcript_id "HERVKC4_6p22.1"; locus "HERVKC4_6p22.1"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0006"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_6p22.1b ### chr6 rmsk gene 27206996 27209753 . + . gene_id "ERVLE_6p22.1b"; transcript_id "ERVLE_6p22.1b"; locus "ERVLE_6p22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1575"; model_cov "2180"; model_pct "38.5"; chr6 rmsk exon 27206996 27208022 8661 + . gene_id "ERVLE_6p22.1b"; transcript_id "ERVLE_6p22.1b"; locus "ERVLE_6p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1575"; repClass "LTR"; repEnd "2562"; repFamily "ERVL"; repLeft "-3105"; repStart "1465"; chr6 rmsk exon 27208349 27208644 8661 + . gene_id "ERVLE_6p22.1b"; transcript_id "ERVLE_6p22.1b"; locus "ERVLE_6p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1575"; repClass "LTR"; repEnd "2893"; repFamily "ERVL"; repLeft "-2774"; repStart "2563"; chr6 rmsk exon 27208956 27209753 8661 + . gene_id "ERVLE_6p22.1b"; transcript_id "ERVLE_6p22.1b"; locus "ERVLE_6p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1575"; repClass "LTR"; repEnd "3647"; repFamily "ERVL"; repLeft "-2020"; repStart "2894"; ### HERVL18_6p22.1a ### chr6 rmsk gene 27405363 27407723 . - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0066"; model_cov "1867"; model_pct "30.9"; chr6 rmsk exon 27405363 27406008 3963 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "2718"; repStart "-2659"; chr6 rmsk exon 27406006 27406279 1433 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr6 rmsk exon 27406279 27406626 1053 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1401"; repStart "-4237"; chr6 rmsk exon 27406669 27406837 922 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "665"; repFamily "ERVL"; repLeft "494"; repStart "-5382"; chr6 rmsk exon 27406823 27407107 1475 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "303"; repFamily "ERVL"; repLeft "19"; repStart "-5744"; chr6 rmsk exon 27407129 27407723 3386 - . gene_id "HERVL18_6p22.1a"; transcript_id "HERVL18_6p22.1a"; locus "HERVL18_6p22.1a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0066"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_6p22.1b ### chr6 rmsk gene 27632305 27634033 . - . gene_id "ERVLB4_6p22.1b"; transcript_id "ERVLB4_6p22.1b"; locus "ERVLB4_6p22.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0693"; model_cov "869"; model_pct "15.2"; chr6 rmsk exon 27632305 27632578 1194 - . gene_id "ERVLB4_6p22.1b"; transcript_id "ERVLB4_6p22.1b"; locus "ERVLB4_6p22.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0693"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "255"; repStart "0"; chr6 rmsk exon 27632581 27633162 4466 - . gene_id "ERVLB4_6p22.1b"; transcript_id "ERVLB4_6p22.1b"; locus "ERVLB4_6p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0693"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "1743"; repStart "-3379"; chr6 rmsk exon 27633591 27633695 4466 - . gene_id "ERVLB4_6p22.1b"; transcript_id "ERVLB4_6p22.1b"; locus "ERVLB4_6p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0693"; repClass "LTR"; repEnd "1742"; repFamily "ERVL"; repLeft "1648"; repStart "-3972"; chr6 rmsk exon 27633858 27634033 1002 - . gene_id "ERVLB4_6p22.1b"; transcript_id "ERVLB4_6p22.1b"; locus "ERVLB4_6p22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0693"; repClass "LTR"; repEnd "1735"; repFamily "ERVL"; repLeft "1552"; repStart "-3979"; ### HERVL_6p22.1 ### chr6 rmsk gene 27634032 27636313 . - . gene_id "HERVL_6p22.1"; transcript_id "HERVL_6p22.1"; locus "HERVL_6p22.1"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0578"; model_cov "2271"; model_pct "40.2"; chr6 rmsk exon 27634032 27636313 17969 - . gene_id "HERVL_6p22.1"; transcript_id "HERVL_6p22.1"; locus "HERVL_6p22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0578"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "1"; repStart "-3382"; ### ERV316A3_6p22.1a ### chr6 rmsk gene 27945679 27947350 . - . gene_id "ERV316A3_6p22.1a"; transcript_id "ERV316A3_6p22.1a"; locus "ERV316A3_6p22.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1195"; model_cov "1248"; model_pct "23.9"; chr6 rmsk exon 27945679 27945965 578 - . gene_id "ERV316A3_6p22.1a"; transcript_id "ERV316A3_6p22.1a"; locus "ERV316A3_6p22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1195"; repClass "LTR"; repEnd "4373"; repFamily "ERVL"; repLeft "4089"; repStart "-853"; chr6 rmsk exon 27945981 27946941 2210 - . gene_id "ERV316A3_6p22.1a"; transcript_id "ERV316A3_6p22.1a"; locus "ERV316A3_6p22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1195"; repClass "LTR"; repEnd "3998"; repFamily "ERVL"; repLeft "3034"; repStart "-1228"; chr6 rmsk exon 27947089 27947350 523 - . gene_id "ERV316A3_6p22.1a"; transcript_id "ERV316A3_6p22.1a"; locus "ERV316A3_6p22.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1195"; repClass "LTR"; repEnd "307"; repFamily "ERVL"; repLeft "3"; repStart "-131"; ### HERVL18_6p22.1b ### chr6 rmsk gene 28000512 28003589 . + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0067"; model_cov "1945"; model_pct "32.2"; chr6 rmsk exon 28000512 28001046 2309 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr6 rmsk exon 28001068 28001358 1459 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-5743"; repStart "19"; chr6 rmsk exon 28001371 28001495 720 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "541"; chr6 rmsk exon 28001524 28001907 1090 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1388"; chr6 rmsk exon 28001907 28002127 627 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "2450"; repFamily "ERVL"; repLeft "-3597"; repStart "2119"; chr6 rmsk exon 28002129 28002333 833 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "-3086"; repStart "2720"; chr6 rmsk exon 28002374 28002925 3275 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "-2561"; repStart "2945"; chr6 rmsk exon 28003056 28003589 2267 + . gene_id "HERVL18_6p22.1b"; transcript_id "HERVL18_6p22.1b"; locus "HERVL18_6p22.1b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0067"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_6p22.1b ### chr6 rmsk gene 28342079 28347246 . + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1197"; model_cov "3784"; model_pct "72.4"; chr6 rmsk exon 28342079 28342380 690 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "-4974"; repStart "-77"; chr6 rmsk exon 28342392 28342708 842 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "1293"; repFamily "ERVL"; repLeft "-3933"; repStart "963"; chr6 rmsk exon 28342755 28343516 2664 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "2697"; repFamily "ERVL"; repLeft "-2529"; repStart "1921"; chr6 rmsk exon 28343828 28344181 2664 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "3067"; repFamily "ERVL"; repLeft "-2159"; repStart "2698"; chr6 rmsk exon 28344328 28344847 4365 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "3690"; repFamily "ERVL"; repLeft "-1536"; repStart "3193"; chr6 rmsk exon 28345173 28346342 4365 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "4864"; repFamily "ERVL"; repLeft "-362"; repStart "3691"; chr6 rmsk exon 28346657 28346939 4365 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-51"; repStart "4865"; chr6 rmsk exon 28346965 28347056 318 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "170"; repFamily "ERVL"; repLeft "-268"; repStart "76"; chr6 rmsk exon 28347074 28347246 593 + . gene_id "ERV316A3_6p22.1b"; transcript_id "ERV316A3_6p22.1b"; locus "ERV316A3_6p22.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1197"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-30"; repStart "227"; ### HERVL18_6p22.1c ### chr6 rmsk gene 28353865 28357249 . - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0068"; model_cov "2455"; model_pct "40.6"; chr6 rmsk exon 28353865 28354395 2522 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 28354639 28354697 257 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "5209"; repStart "-780"; chr6 rmsk exon 28354700 28354791 629 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "4486"; repFamily "ERVL"; repLeft "4394"; repStart "-1561"; chr6 rmsk exon 28354792 28355649 5473 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "3581"; repFamily "ERVL"; repLeft "2718"; repStart "-2466"; chr6 rmsk exon 28355624 28355921 1485 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "2477"; repFamily "ERVL"; repLeft "2119"; repStart "-3570"; chr6 rmsk exon 28355921 28356282 1171 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1390"; repStart "-4237"; chr6 rmsk exon 28356270 28356361 499 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "962"; repFamily "ERVL"; repLeft "871"; repStart "-5085"; chr6 rmsk exon 28356369 28356637 1467 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "764"; repFamily "ERVL"; repLeft "492"; repStart "-5283"; chr6 rmsk exon 28356620 28356922 1475 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "3"; repStart "-5743"; chr6 rmsk exon 28356923 28357249 2259 - . gene_id "HERVL18_6p22.1c"; transcript_id "HERVL18_6p22.1c"; locus "HERVL18_6p22.1c"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0068"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### ERV316A3_6p22.1c ### chr6 rmsk gene 28454462 28455650 . - . gene_id "ERV316A3_6p22.1c"; transcript_id "ERV316A3_6p22.1c"; locus "ERV316A3_6p22.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1198"; model_cov "870"; model_pct "16.6"; chr6 rmsk exon 28454462 28454557 1719 - . gene_id "ERV316A3_6p22.1c"; transcript_id "ERV316A3_6p22.1c"; locus "ERV316A3_6p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1198"; repClass "LTR"; repEnd "4881"; repFamily "ERVL"; repLeft "4725"; repStart "-345"; chr6 rmsk exon 28454598 28455168 1719 - . gene_id "ERV316A3_6p22.1c"; transcript_id "ERV316A3_6p22.1c"; locus "ERV316A3_6p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1198"; repClass "LTR"; repEnd "4724"; repFamily "ERVL"; repLeft "4162"; repStart "-502"; chr6 rmsk exon 28455189 28455337 473 - . gene_id "ERV316A3_6p22.1c"; transcript_id "ERV316A3_6p22.1c"; locus "ERV316A3_6p22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1198"; repClass "LTR"; repEnd "4050"; repFamily "ERVL"; repLeft "3898"; repStart "-1176"; chr6 rmsk exon 28455422 28455650 601 - . gene_id "ERV316A3_6p22.1c"; transcript_id "ERV316A3_6p22.1c"; locus "ERV316A3_6p22.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1198"; repClass "LTR"; repEnd "253"; repFamily "ERVL"; repLeft "12"; repStart "-227"; ### HML2_6p22.1 ### chr6 rmsk gene 28682591 28692958 . + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0049"; model_cov "7588"; model_pct "100.0"; chr6 rmsk exon 28682591 28683408 3942 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189"; chr6 rmsk exon 28683412 28684170 5291 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "776"; repFamily "ERVK"; repLeft "-6760"; repStart "1"; chr6 rmsk exon 28684224 28687381 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722"; chr6 rmsk exon 28687382 28688356 6122 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 28688357 28692010 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910"; chr6 rmsk exon 28692011 28692958 5830 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_6p22.1c ### chr6 rmsk gene 28704386 28705528 . - . gene_id "ERVLE_6p22.1c"; transcript_id "ERVLE_6p22.1c"; locus "ERVLE_6p22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1578"; model_cov "692"; model_pct "12.2"; chr6 rmsk exon 28704386 28704488 395 - . gene_id "ERVLE_6p22.1c"; transcript_id "ERVLE_6p22.1c"; locus "ERVLE_6p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1578"; repClass "LTR"; repEnd "5489"; repFamily "ERVL"; repLeft "5370"; repStart "-178"; chr6 rmsk exon 28704975 28705528 1849 - . gene_id "ERVLE_6p22.1c"; transcript_id "ERVLE_6p22.1c"; locus "ERVLE_6p22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1578"; repClass "LTR"; repEnd "5306"; repFamily "ERVL"; repLeft "4733"; repStart "-361"; ### HERVS71_6p22.1 ### chr6 rmsk gene 28766179 28776502 . - . gene_id "HERVS71_6p22.1"; transcript_id "HERVS71_6p22.1"; locus "HERVS71_6p22.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0017"; model_cov "8932"; model_pct "99.5"; chr6 rmsk exon 28766179 28766720 3660 - . gene_id "HERVS71_6p22.1"; transcript_id "HERVS71_6p22.1"; locus "HERVS71_6p22.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0017"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6 rmsk exon 28766731 28773949 60739 - . gene_id "HERVS71_6p22.1"; transcript_id "HERVS71_6p22.1"; locus "HERVS71_6p22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0017"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6 rmsk exon 28774242 28775957 60739 - . gene_id "HERVS71_6p22.1"; transcript_id "HERVS71_6p22.1"; locus "HERVS71_6p22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0017"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6 rmsk exon 28775960 28776502 3671 - . gene_id "HERVS71_6p22.1"; transcript_id "HERVS71_6p22.1"; locus "HERVS71_6p22.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0017"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6p22.1 ### chr6 rmsk gene 28868273 28875869 . - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0073"; model_cov "4258"; model_pct "79.7"; chr6 rmsk exon 28868273 28868660 2502 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 28868661 28869321 9017 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6 rmsk exon 28869623 28870294 9017 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6 rmsk exon 28870596 28870633 9017 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6 rmsk exon 28870622 28870739 788 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6 rmsk exon 28870731 28871867 7614 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6 rmsk exon 28873154 28873948 10238 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6 rmsk exon 28874261 28874566 10238 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6 rmsk exon 28875177 28875684 10238 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6 rmsk exon 28875685 28875869 2524 - . gene_id "LTR57_6p22.1"; transcript_id "LTR57_6p22.1"; locus "LTR57_6p22.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0073"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6p22.1a ### chr6 rmsk gene 29142477 29143260 . - . gene_id "MER41_6p22.1a"; transcript_id "MER41_6p22.1a"; locus "MER41_6p22.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0208"; model_cov "786"; model_pct "13.2"; chr6 rmsk exon 29142477 29143260 5177 - . gene_id "MER41_6p22.1a"; transcript_id "MER41_6p22.1a"; locus "MER41_6p22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0208"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6p22.1b ### chr6 rmsk gene 29143266 29144503 . + . gene_id "MER41_6p22.1b"; transcript_id "MER41_6p22.1b"; locus "MER41_6p22.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0209"; model_cov "745"; model_pct "12.5"; chr6 rmsk exon 29143266 29143997 4945 + . gene_id "MER41_6p22.1b"; transcript_id "MER41_6p22.1b"; locus "MER41_6p22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0209"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6 rmsk exon 29143998 29144503 2684 + . gene_id "MER41_6p22.1b"; transcript_id "MER41_6p22.1b"; locus "MER41_6p22.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0209"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6p22.1d ### chr6 rmsk gene 29209120 29212517 . + . gene_id "ERV316A3_6p22.1d"; transcript_id "ERV316A3_6p22.1d"; locus "ERV316A3_6p22.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1200"; model_cov "2675"; model_pct "51.2"; chr6 rmsk exon 29209120 29209833 1880 + . gene_id "ERV316A3_6p22.1d"; transcript_id "ERV316A3_6p22.1d"; locus "ERV316A3_6p22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1200"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2542"; chr6 rmsk exon 29209901 29211540 3939 + . gene_id "ERV316A3_6p22.1d"; transcript_id "ERV316A3_6p22.1d"; locus "ERV316A3_6p22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1200"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "3020"; chr6 rmsk exon 29211564 29211836 667 + . gene_id "ERV316A3_6p22.1d"; transcript_id "ERV316A3_6p22.1d"; locus "ERV316A3_6p22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1200"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6 rmsk exon 29212068 29212517 1196 + . gene_id "ERV316A3_6p22.1d"; transcript_id "ERV316A3_6p22.1d"; locus "ERV316A3_6p22.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1200"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6p22.1 ### chr6 rmsk gene 29245477 29252808 . - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0547"; model_cov "6219"; model_pct "80.6"; chr6 rmsk exon 29245477 29245915 2405 - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0547"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 29245916 29246639 4639 - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0547"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6 rmsk exon 29246634 29251773 15669 - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0547"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "791"; repStart "-1878"; chr6 rmsk exon 29251829 29252366 968 - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0547"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6 rmsk exon 29252367 29252808 2256 - . gene_id "HERVH_6p22.1"; transcript_id "HERVH_6p22.1"; locus "HERVH_6p22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0547"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### ERV316A3_6p22.1e ### chr6 rmsk gene 29404359 29405943 . + . gene_id "ERV316A3_6p22.1e"; transcript_id "ERV316A3_6p22.1e"; locus "ERV316A3_6p22.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1201"; model_cov "1658"; model_pct "31.7"; chr6 rmsk exon 29404359 29405943 3239 + . gene_id "ERV316A3_6p22.1e"; transcript_id "ERV316A3_6p22.1e"; locus "ERV316A3_6p22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1201"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-2833"; repStart "735"; ### MER4_6p22.1 ### chr6 rmsk gene 29521853 29527396 . - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0317"; model_cov "3139"; model_pct "47.6"; chr6 rmsk exon 29521853 29523501 8524 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0317"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3170"; repStart "-1798"; chr6 rmsk exon 29523788 29524408 8524 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0317"; repClass "LTR"; repEnd "3169"; repFamily "ERV1"; repLeft "2735"; repStart "-3429"; chr6 rmsk exon 29524396 29524472 1594 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0317"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6 rmsk exon 29524996 29525840 2053 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0317"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6 rmsk exon 29526892 29526973 484 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0317"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6 rmsk exon 29526977 29527396 2457 - . gene_id "MER4_6p22.1"; transcript_id "MER4_6p22.1"; locus "MER4_6p22.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0317"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6p22.1f ### chr6 rmsk gene 29579631 29584117 . - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1202"; model_cov "1992"; model_pct "38.1"; chr6 rmsk exon 29579631 29580340 3412 - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1202"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6 rmsk exon 29580865 29581483 3412 - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1202"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2789"; repStart "-1847"; chr6 rmsk exon 29581798 29581981 566 - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1202"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6 rmsk exon 29583254 29583404 793 - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1202"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6 rmsk exon 29583700 29584117 890 - . gene_id "ERV316A3_6p22.1f"; transcript_id "ERV316A3_6p22.1f"; locus "ERV316A3_6p22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1202"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6p22.1 ### chr6 rmsk gene 29683681 29684478 . + . gene_id "HERVL40_6p22.1"; transcript_id "HERVL40_6p22.1"; locus "HERVL40_6p22.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0174"; model_cov "809"; model_pct "14.6"; chr6 rmsk exon 29683681 29684478 1556 + . gene_id "HERVL40_6p22.1"; transcript_id "HERVL40_6p22.1"; locus "HERVL40_6p22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0174"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "415"; ### ERV316A3_6p22.1g ### chr6 rmsk gene 29710867 29715028 . + . gene_id "ERV316A3_6p22.1g"; transcript_id "ERV316A3_6p22.1g"; locus "ERV316A3_6p22.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1203"; model_cov "3757"; model_pct "71.9"; chr6 rmsk exon 29710867 29710961 335 + . gene_id "ERV316A3_6p22.1g"; transcript_id "ERV316A3_6p22.1g"; locus "ERV316A3_6p22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1203"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6 rmsk exon 29710986 29713434 5062 + . gene_id "ERV316A3_6p22.1g"; transcript_id "ERV316A3_6p22.1g"; locus "ERV316A3_6p22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1203"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-1944"; repStart "832"; chr6 rmsk exon 29713431 29714646 3351 + . gene_id "ERV316A3_6p22.1g"; transcript_id "ERV316A3_6p22.1g"; locus "ERV316A3_6p22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1203"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6 rmsk exon 29714650 29715028 994 + . gene_id "ERV316A3_6p22.1g"; transcript_id "ERV316A3_6p22.1g"; locus "ERV316A3_6p22.1g"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1203"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6p22.1h ### chr6 rmsk gene 29767822 29772967 . + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1204"; model_cov "4121"; model_pct "78.9"; chr6 rmsk exon 29767822 29768231 1175 + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1204"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr6 rmsk exon 29768506 29768936 933 + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1204"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-4517"; repStart "233"; chr6 rmsk exon 29768941 29771387 4741 + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1204"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6 rmsk exon 29771394 29772593 3123 + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1204"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6 rmsk exon 29772596 29772967 1101 + . gene_id "ERV316A3_6p22.1h"; transcript_id "ERV316A3_6p22.1h"; locus "ERV316A3_6p22.1h"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1204"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6p22.1i ### chr6 rmsk gene 29793128 29794351 . + . gene_id "ERV316A3_6p22.1i"; transcript_id "ERV316A3_6p22.1i"; locus "ERV316A3_6p22.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1205"; model_cov "862"; model_pct "16.5"; chr6 rmsk exon 29793128 29793966 1960 + . gene_id "ERV316A3_6p22.1i"; transcript_id "ERV316A3_6p22.1i"; locus "ERV316A3_6p22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1205"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6 rmsk exon 29793970 29794351 1317 + . gene_id "ERV316A3_6p22.1i"; transcript_id "ERV316A3_6p22.1i"; locus "ERV316A3_6p22.1i"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1205"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6p22.1j ### chr6 rmsk gene 29815953 29818692 . + . gene_id "ERV316A3_6p22.1j"; transcript_id "ERV316A3_6p22.1j"; locus "ERV316A3_6p22.1j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1206"; model_cov "2330"; model_pct "44.6"; chr6 rmsk exon 29815953 29817086 2812 + . gene_id "ERV316A3_6p22.1j"; transcript_id "ERV316A3_6p22.1j"; locus "ERV316A3_6p22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1206"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6 rmsk exon 29817087 29818296 3041 + . gene_id "ERV316A3_6p22.1j"; transcript_id "ERV316A3_6p22.1j"; locus "ERV316A3_6p22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1206"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6 rmsk exon 29818300 29818692 1224 + . gene_id "ERV316A3_6p22.1j"; transcript_id "ERV316A3_6p22.1j"; locus "ERV316A3_6p22.1j"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1206"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6p22.1k ### chr6 rmsk gene 29868623 29874102 . + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1207"; model_cov "4154"; model_pct "79.5"; chr6 rmsk exon 29868623 29869060 1269 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 29869072 29869587 571 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-4697"; repStart "16"; chr6 rmsk exon 29869742 29871596 5259 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "2672"; repFamily "ERVL"; repLeft "-2554"; repStart "832"; chr6 rmsk exon 29871892 29872496 5259 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2673"; chr6 rmsk exon 29872497 29873704 3413 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6 rmsk exon 29873715 29874102 1152 + . gene_id "ERV316A3_6p22.1k"; transcript_id "ERV316A3_6p22.1k"; locus "ERV316A3_6p22.1k"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1207"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### HML3_6p22.1 ### chr6 rmsk gene 29875650 29881829 . - . gene_id "HML3_6p22.1"; transcript_id "HML3_6p22.1"; locus "HML3_6p22.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0100"; model_cov "5342"; model_pct "88.7"; chr6 rmsk exon 29875650 29876162 4455 - . gene_id "HML3_6p22.1"; transcript_id "HML3_6p22.1"; locus "HML3_6p22.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0100"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 29876165 29880725 31925 - . gene_id "HML3_6p22.1"; transcript_id "HML3_6p22.1"; locus "HML3_6p22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0100"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "1280"; repStart "-2"; chr6 rmsk exon 29880726 29881317 4679 - . gene_id "HML3_6p22.1"; transcript_id "HML3_6p22.1"; locus "HML3_6p22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0100"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr6 rmsk exon 29881318 29881829 4305 - . gene_id "HML3_6p22.1"; transcript_id "HML3_6p22.1"; locus "HML3_6p22.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0100"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### ERV316A3_6p22.1l ### chr6 rmsk gene 29892311 29893557 . + . gene_id "ERV316A3_6p22.1l"; transcript_id "ERV316A3_6p22.1l"; locus "ERV316A3_6p22.1l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1208"; model_cov "1242"; model_pct "23.8"; chr6 rmsk exon 29892311 29892396 338 + . gene_id "ERV316A3_6p22.1l"; transcript_id "ERV316A3_6p22.1l"; locus "ERV316A3_6p22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1208"; repClass "LTR"; repEnd "1665"; repFamily "ERVL"; repLeft "-3561"; repStart "1579"; chr6 rmsk exon 29892398 29893557 2889 + . gene_id "ERV316A3_6p22.1l"; transcript_id "ERV316A3_6p22.1l"; locus "ERV316A3_6p22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1208"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1871"; ### ERV316A3_6p22.1m ### chr6 rmsk gene 29912749 29918216 . + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1209"; model_cov "3808"; model_pct "72.9"; chr6 rmsk exon 29912749 29913191 1268 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 29913429 29913766 716 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "217"; chr6 rmsk exon 29913876 29916146 4669 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "-2143"; repStart "832"; chr6 rmsk exon 29916347 29916916 1263 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6 rmsk exon 29917209 29917832 1368 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "4393"; chr6 rmsk exon 29917835 29918216 1170 + . gene_id "ERV316A3_6p22.1m"; transcript_id "ERV316A3_6p22.1m"; locus "ERV316A3_6p22.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1209"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6p22.1n ### chr6 rmsk gene 29946920 29950412 . + . gene_id "ERV316A3_6p22.1n"; transcript_id "ERV316A3_6p22.1n"; locus "ERV316A3_6p22.1n"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1212"; model_cov "3059"; model_pct "58.5"; chr6 rmsk exon 29946920 29948746 3485 + . gene_id "ERV316A3_6p22.1n"; transcript_id "ERV316A3_6p22.1n"; locus "ERV316A3_6p22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1212"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6 rmsk exon 29948755 29949540 1752 + . gene_id "ERV316A3_6p22.1n"; transcript_id "ERV316A3_6p22.1n"; locus "ERV316A3_6p22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1212"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-674"; repStart "3783"; chr6 rmsk exon 29949641 29950015 799 + . gene_id "ERV316A3_6p22.1n"; transcript_id "ERV316A3_6p22.1n"; locus "ERV316A3_6p22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1212"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4556"; chr6 rmsk exon 29950024 29950412 1222 + . gene_id "ERV316A3_6p22.1n"; transcript_id "ERV316A3_6p22.1n"; locus "ERV316A3_6p22.1n"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1212"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6p22.1 ### chr6 rmsk gene 29962489 29970366 . + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0031"; model_cov "3803"; model_pct "50.1"; chr6 rmsk exon 29962489 29962935 2779 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6 rmsk exon 29964271 29964917 3860 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; chr6 rmsk exon 29966398 29967123 5130 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6 rmsk exon 29967423 29967550 5130 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6 rmsk exon 29967567 29967775 1319 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-2127"; repStart "5243"; chr6 rmsk exon 29967929 29968831 4760 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6 rmsk exon 29969030 29969763 3976 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6 rmsk exon 29970004 29970366 1986 + . gene_id "HERVP71A_6p22.1"; transcript_id "HERVP71A_6p22.1"; locus "HERVP71A_6p22.1"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0031"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6p22.1o ### chr6 rmsk gene 29997951 30003286 . + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1213"; model_cov "4182"; model_pct "80.0"; chr6 rmsk exon 29997951 29998394 1377 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 29998641 29999020 760 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-4577"; repStart "230"; chr6 rmsk exon 29999086 29999996 1679 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "2123"; repFamily "ERVL"; repLeft "-3103"; repStart "1068"; chr6 rmsk exon 30000001 30000670 3464 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "1763"; chr6 rmsk exon 30000985 30001856 3464 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6 rmsk exon 30001857 30003060 3045 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6 rmsk exon 30003074 30003286 733 + . gene_id "ERV316A3_6p22.1o"; transcript_id "ERV316A3_6p22.1o"; locus "ERV316A3_6p22.1o"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1213"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6p22.1p ### chr6 rmsk gene 30276058 30277473 . + . gene_id "ERV316A3_6p22.1p"; transcript_id "ERV316A3_6p22.1p"; locus "ERV316A3_6p22.1p"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1214"; model_cov "1396"; model_pct "26.7"; chr6 rmsk exon 30276058 30277473 2397 + . gene_id "ERV316A3_6p22.1p"; transcript_id "ERV316A3_6p22.1p"; locus "ERV316A3_6p22.1p"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1214"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6p22.1d ### chr6 rmsk gene 30379919 30380543 . - . gene_id "ERVLE_6p22.1d"; transcript_id "ERVLE_6p22.1d"; locus "ERVLE_6p22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1580"; model_cov "653"; model_pct "11.5"; chr6 rmsk exon 30379919 30380543 1298 - . gene_id "ERVLE_6p22.1d"; transcript_id "ERVLE_6p22.1d"; locus "ERVLE_6p22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1580"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### HERVL_6p21.33a ### chr6 rmsk gene 30966374 30971833 . + . gene_id "HERVL_6p21.33a"; transcript_id "HERVL_6p21.33a"; locus "HERVL_6p21.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0579"; model_cov "4774"; model_pct "84.4"; chr6 rmsk exon 30966374 30967510 36490 + . gene_id "HERVL_6p21.33a"; transcript_id "HERVL_6p21.33a"; locus "HERVL_6p21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0579"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6 rmsk exon 30967811 30971424 36490 + . gene_id "HERVL_6p21.33a"; transcript_id "HERVL_6p21.33a"; locus "HERVL_6p21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0579"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6 rmsk exon 30971425 30971833 3171 + . gene_id "HERVL_6p21.33a"; transcript_id "HERVL_6p21.33a"; locus "HERVL_6p21.33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0579"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6p21.33 ### chr6 rmsk gene 31036968 31041018 . - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1582"; model_cov "2672"; model_pct "47.2"; chr6 rmsk exon 31036968 31038053 3767 - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1582"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6 rmsk exon 31038098 31038244 403 - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1582"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6 rmsk exon 31038705 31039490 1488 - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1582"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6 rmsk exon 31039790 31039827 1065 - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1582"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "757"; repStart "-4878"; chr6 rmsk exon 31040614 31041018 1065 - . gene_id "ERVLE_6p21.33"; transcript_id "ERVLE_6p21.33"; locus "ERVLE_6p21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1582"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "340"; repStart "-4911"; ### HARLEQUIN_6p21.33 ### chr6 rmsk gene 31181866 31186769 . - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0084"; model_cov "4517"; model_pct "65.5"; chr6 rmsk exon 31181866 31182438 3696 - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0084"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "5886"; repStart "-422"; chr6 rmsk exon 31182433 31184449 14726 - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0084"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6 rmsk exon 31184449 31185421 6797 - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0084"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6 rmsk exon 31185415 31186290 6197 - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0084"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "1"; repStart "-6003"; chr6 rmsk exon 31186291 31186769 4025 - . gene_id "HARLEQUIN_6p21.33"; transcript_id "HARLEQUIN_6p21.33"; locus "HARLEQUIN_6p21.33"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0084"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6p21.33 ### chr6 rmsk gene 31225751 31228462 . - . gene_id "HERV3_6p21.33"; transcript_id "HERV3_6p21.33"; locus "HERV3_6p21.33"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0023"; model_cov "1870"; model_pct "22.2"; chr6 rmsk exon 31225751 31226598 8662 - . gene_id "HERV3_6p21.33"; transcript_id "HERV3_6p21.33"; locus "HERV3_6p21.33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0023"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6502"; repStart "-1086"; chr6 rmsk exon 31226904 31227883 8662 - . gene_id "HERV3_6p21.33"; transcript_id "HERV3_6p21.33"; locus "HERV3_6p21.33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0023"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6 rmsk exon 31227885 31228005 850 - . gene_id "HERV3_6p21.33"; transcript_id "HERV3_6p21.33"; locus "HERV3_6p21.33"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0023"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6 rmsk exon 31228295 31228462 850 - . gene_id "HERV3_6p21.33"; transcript_id "HERV3_6p21.33"; locus "HERV3_6p21.33"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0023"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6p21.33 ### chr6 rmsk gene 31231985 31236096 . - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0101"; model_cov "3520"; model_pct "58.5"; chr6 rmsk exon 31231985 31232098 874 - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0101"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6 rmsk exon 31232101 31232619 3975 - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0101"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4601"; repStart "-916"; chr6 rmsk exon 31232607 31232836 1769 - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0101"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6 rmsk exon 31232838 31235570 21427 - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0101"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6 rmsk exon 31235583 31236096 4267 - . gene_id "HML3_6p21.33"; transcript_id "HML3_6p21.33"; locus "HML3_6p21.33"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0101"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6p21.33a ### chr6 rmsk gene 31245355 31246550 . - . gene_id "ERVLB4_6p21.33a"; transcript_id "ERVLB4_6p21.33a"; locus "ERVLB4_6p21.33a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0694"; model_cov "867"; model_pct "15.2"; chr6 rmsk exon 31245355 31245786 3832 - . gene_id "ERVLB4_6p21.33a"; transcript_id "ERVLB4_6p21.33a"; locus "ERVLB4_6p21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0694"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6 rmsk exon 31246099 31246550 3832 - . gene_id "ERVLB4_6p21.33a"; transcript_id "ERVLB4_6p21.33a"; locus "ERVLB4_6p21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0694"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERV316A3_6p21.33a ### chr6 rmsk gene 31300558 31302000 . + . gene_id "ERV316A3_6p21.33a"; transcript_id "ERV316A3_6p21.33a"; locus "ERV316A3_6p21.33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1215"; model_cov "1471"; model_pct "28.1"; chr6 rmsk exon 31300558 31302000 3014 + . gene_id "ERV316A3_6p21.33a"; transcript_id "ERV316A3_6p21.33a"; locus "ERV316A3_6p21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1215"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6p21.33b ### chr6 rmsk gene 31320444 31321942 . - . gene_id "ERVLB4_6p21.33b"; transcript_id "ERVLB4_6p21.33b"; locus "ERVLB4_6p21.33b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0695"; model_cov "833"; model_pct "14.6"; chr6 rmsk exon 31320444 31320781 1316 - . gene_id "ERVLB4_6p21.33b"; transcript_id "ERVLB4_6p21.33b"; locus "ERVLB4_6p21.33b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0695"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-66"; repStart "-116"; chr6 rmsk exon 31320789 31321185 3317 - . gene_id "ERVLB4_6p21.33b"; transcript_id "ERVLB4_6p21.33b"; locus "ERVLB4_6p21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0695"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5295"; repStart "-9"; chr6 rmsk exon 31321512 31321942 3317 - . gene_id "ERVLB4_6p21.33b"; transcript_id "ERVLB4_6p21.33b"; locus "ERVLB4_6p21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0695"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4871"; repStart "-420"; ### ERVLB4_6p21.33c ### chr6 rmsk gene 31376331 31377123 . - . gene_id "ERVLB4_6p21.33c"; transcript_id "ERVLB4_6p21.33c"; locus "ERVLB4_6p21.33c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0697"; model_cov "809"; model_pct "14.2"; chr6 rmsk exon 31376331 31377123 2656 - . gene_id "ERVLB4_6p21.33c"; transcript_id "ERVLB4_6p21.33c"; locus "ERVLB4_6p21.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0697"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "75"; repStart "-4830"; ### ERV316A3_6p21.33b ### chr6 rmsk gene 31383746 31387283 . - . gene_id "ERV316A3_6p21.33b"; transcript_id "ERV316A3_6p21.33b"; locus "ERV316A3_6p21.33b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1216"; model_cov "3041"; model_pct "58.2"; chr6 rmsk exon 31383746 31384092 1032 - . gene_id "ERV316A3_6p21.33b"; transcript_id "ERV316A3_6p21.33b"; locus "ERV316A3_6p21.33b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1216"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "51"; repStart "-56"; chr6 rmsk exon 31384094 31385123 2681 - . gene_id "ERV316A3_6p21.33b"; transcript_id "ERV316A3_6p21.33b"; locus "ERV316A3_6p21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1216"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3971"; repStart "-247"; chr6 rmsk exon 31385216 31385341 251 - . gene_id "ERV316A3_6p21.33b"; transcript_id "ERV316A3_6p21.33b"; locus "ERV316A3_6p21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1216"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3797"; repStart "-1290"; chr6 rmsk exon 31385365 31387283 3775 - . gene_id "ERV316A3_6p21.33b"; transcript_id "ERV316A3_6p21.33b"; locus "ERV316A3_6p21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1216"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "1388"; repStart "-1944"; ### HERVL_6p21.33b ### chr6 rmsk gene 31429886 31436004 . + . gene_id "HERVL_6p21.33b"; transcript_id "HERVL_6p21.33b"; locus "HERVL_6p21.33b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0580"; model_cov "5653"; model_pct "100.0"; chr6 rmsk exon 31429886 31435550 44220 + . gene_id "HERVL_6p21.33b"; transcript_id "HERVL_6p21.33b"; locus "HERVL_6p21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0580"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 31435551 31436004 3027 + . gene_id "HERVL_6p21.33b"; transcript_id "HERVL_6p21.33b"; locus "HERVL_6p21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0580"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_6p21.33c ### chr6 rmsk gene 31463420 31469043 . - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1217"; model_cov "4109"; model_pct "78.6"; chr6 rmsk exon 31463420 31463715 742 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "50"; repStart "-110"; chr6 rmsk exon 31463716 31464933 3573 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3776"; repStart "-247"; chr6 rmsk exon 31464931 31465784 1831 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "1964"; repStart "-2235"; chr6 rmsk exon 31466237 31467707 3554 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "989"; repStart "-2816"; chr6 rmsk exon 31468051 31468201 3554 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "988"; repFamily "ERVL"; repLeft "832"; repStart "-4238"; chr6 rmsk exon 31468362 31468644 762 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "219"; repStart "-4705"; chr6 rmsk exon 31468881 31469043 1167 - . gene_id "ERV316A3_6p21.33c"; transcript_id "ERV316A3_6p21.33c"; locus "ERV316A3_6p21.33c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1217"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "323"; repStart "0"; ### HERVKC4_6p21.33a ### chr6 rmsk gene 31984692 31991052 . - . gene_id "HERVKC4_6p21.33a"; transcript_id "HERVKC4_6p21.33a"; locus "HERVKC4_6p21.33a"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0007"; model_cov "5261"; model_pct "100.0"; chr6 rmsk exon 31984692 31985241 4167 - . gene_id "HERVKC4_6p21.33a"; transcript_id "HERVKC4_6p21.33a"; locus "HERVKC4_6p21.33a"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0007"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 31985242 31990504 44775 - . gene_id "HERVKC4_6p21.33a"; transcript_id "HERVKC4_6p21.33a"; locus "HERVKC4_6p21.33a"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0007"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 31990505 31991052 5184 - . gene_id "HERVKC4_6p21.33a"; transcript_id "HERVKC4_6p21.33a"; locus "HERVKC4_6p21.33a"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0007"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVKC4_6p21.33b ### chr6 rmsk gene 32017430 32023790 . - . gene_id "HERVKC4_6p21.33b"; transcript_id "HERVKC4_6p21.33b"; locus "HERVKC4_6p21.33b"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0008"; model_cov "5261"; model_pct "100.0"; chr6 rmsk exon 32017430 32017979 4163 - . gene_id "HERVKC4_6p21.33b"; transcript_id "HERVKC4_6p21.33b"; locus "HERVKC4_6p21.33b"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0008"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 32017980 32023242 42565 - . gene_id "HERVKC4_6p21.33b"; transcript_id "HERVKC4_6p21.33b"; locus "HERVKC4_6p21.33b"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0008"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 32023243 32023790 5162 - . gene_id "HERVKC4_6p21.33b"; transcript_id "HERVKC4_6p21.33b"; locus "HERVKC4_6p21.33b"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0008"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_6p21.32 ### chr6 rmsk gene 32374313 32376450 . + . gene_id "HUERSP2_6p21.32"; transcript_id "HUERSP2_6p21.32"; locus "HUERSP2_6p21.32"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0058"; model_cov "1234"; model_pct "40.0"; chr6 rmsk exon 32374313 32375287 6277 + . gene_id "HUERSP2_6p21.32"; transcript_id "HUERSP2_6p21.32"; locus "HUERSP2_6p21.32"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0058"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6 rmsk exon 32375364 32375612 1572 + . gene_id "HUERSP2_6p21.32"; transcript_id "HUERSP2_6p21.32"; locus "HUERSP2_6p21.32"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0058"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6 rmsk exon 32375615 32376450 5020 + . gene_id "HUERSP2_6p21.32"; transcript_id "HUERSP2_6p21.32"; locus "HUERSP2_6p21.32"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0058"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6p21.32a ### chr6 rmsk gene 32475495 32479598 . - . gene_id "HML6_6p21.32a"; transcript_id "HML6_6p21.32a"; locus "HML6_6p21.32a"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0040"; model_cov "3408"; model_pct "47.3"; chr6 rmsk exon 32475495 32477330 23167 - . gene_id "HML6_6p21.32a"; transcript_id "HML6_6p21.32a"; locus "HML6_6p21.32a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0040"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6 rmsk exon 32477631 32479143 23167 - . gene_id "HML6_6p21.32a"; transcript_id "HML6_6p21.32a"; locus "HML6_6p21.32a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0040"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6 rmsk exon 32479178 32479598 2476 - . gene_id "HML6_6p21.32a"; transcript_id "HML6_6p21.32a"; locus "HML6_6p21.32a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0040"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML6_6p21.32b ### chr6 rmsk gene 32559720 32567345 . - . gene_id "HML6_6p21.32b"; transcript_id "HML6_6p21.32b"; locus "HML6_6p21.32b"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0041"; model_cov "6915"; model_pct "96.0"; chr6 rmsk exon 32559720 32560085 2045 - . gene_id "HML6_6p21.32b"; transcript_id "HML6_6p21.32b"; locus "HML6_6p21.32b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0041"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 32560088 32563297 15714 - . gene_id "HML6_6p21.32b"; transcript_id "HML6_6p21.32b"; locus "HML6_6p21.32b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0041"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "3927"; repStart "-2"; chr6 rmsk exon 32563290 32566890 25331 - . gene_id "HML6_6p21.32b"; transcript_id "HML6_6p21.32b"; locus "HML6_6p21.32b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0041"; repClass "LTR"; repEnd "3643"; repFamily "ERVK"; repLeft "1"; repStart "-3559"; chr6 rmsk exon 32566925 32567345 2518 - . gene_id "HML6_6p21.32b"; transcript_id "HML6_6p21.32b"; locus "HML6_6p21.32b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0041"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVFH19_6p21.32 ### chr6 rmsk gene 32706957 32708797 . + . gene_id "HERVFH19_6p21.32"; transcript_id "HERVFH19_6p21.32"; locus "HERVFH19_6p21.32"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0018"; model_cov "1384"; model_pct "17.9"; chr6 rmsk exon 32706957 32708330 10347 + . gene_id "HERVFH19_6p21.32"; transcript_id "HERVFH19_6p21.32"; locus "HERVFH19_6p21.32"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0018"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6335"; chr6 rmsk exon 32708331 32708797 3421 + . gene_id "HERVFH19_6p21.32"; transcript_id "HERVFH19_6p21.32"; locus "HERVFH19_6p21.32"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0018"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HML5_6p21.32 ### chr6 rmsk gene 33049231 33056518 . + . gene_id "HML5_6p21.32"; transcript_id "HML5_6p21.32"; locus "HML5_6p21.32"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0045"; model_cov "6805"; model_pct "99.5"; chr6 rmsk exon 33049231 33049695 2743 + . gene_id "HML5_6p21.32"; transcript_id "HML5_6p21.32"; locus "HML5_6p21.32"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0045"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 33049698 33056518 52465 + . gene_id "HML5_6p21.32"; transcript_id "HML5_6p21.32"; locus "HML5_6p21.32"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0045"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### HUERSP3_6p21.32 ### chr6 rmsk gene 33117739 33125003 . - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0079"; model_cov "4769"; model_pct "53.5"; chr6 rmsk exon 33117739 33118377 4275 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 33118378 33118652 1539 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6 rmsk exon 33119116 33119227 477 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6 rmsk exon 33119228 33119959 4140 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6 rmsk exon 33119946 33120584 4145 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6 rmsk exon 33120587 33120728 1017 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6 rmsk exon 33120722 33121937 8425 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6 rmsk exon 33122935 33123947 6917 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6 rmsk exon 33123957 33124261 1492 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6 rmsk exon 33124267 33124324 307 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6 rmsk exon 33124370 33125003 4038 - . gene_id "HUERSP3_6p21.32"; transcript_id "HUERSP3_6p21.32"; locus "HUERSP3_6p21.32"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0079"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_6p21.32 ### chr6 rmsk gene 33135484 33138647 . - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; category "internal"; intModel "MER41-int"; locid "MER41-int_0210"; model_cov "1930"; model_pct "32.5"; chr6 rmsk exon 33135484 33135838 12365 - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0210"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1959"; repStart "-3651"; chr6 rmsk exon 33136130 33136928 12365 - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0210"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1175"; repStart "-3988"; chr6 rmsk exon 33137231 33137756 12365 - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0210"; repClass "LTR"; repEnd "1174"; repFamily "ERV1"; repLeft "632"; repStart "-4772"; chr6 rmsk exon 33138076 33138193 12365 - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0210"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "522"; repStart "-5315"; chr6 rmsk exon 33138488 33138647 12365 - . gene_id "MER41_6p21.32"; transcript_id "MER41_6p21.32"; locus "MER41_6p21.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0210"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "361"; repStart "-5425"; ### HERVH_6p21.32 ### chr6 rmsk gene 33345910 33351803 . + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0548"; model_cov "5065"; model_pct "65.7"; chr6 rmsk exon 33345910 33347070 7164 + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0548"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6 rmsk exon 33347071 33348908 11525 + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0548"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6 rmsk exon 33348906 33350808 13294 + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0548"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6 rmsk exon 33351202 33351416 1305 + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0548"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7491"; chr6 rmsk exon 33351417 33351803 2757 + . gene_id "HERVH_6p21.32"; transcript_id "HERVH_6p21.32"; locus "HERVH_6p21.32"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0548"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6p21.32 ### chr6 rmsk gene 33351884 33355241 . - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0085"; model_cov "2118"; model_pct "30.7"; chr6 rmsk exon 33351884 33353598 16118 - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0085"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6 rmsk exon 33353893 33353969 16118 - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0085"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6 rmsk exon 33354280 33354304 16118 - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0085"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6 rmsk exon 33354605 33354794 16118 - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0085"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6 rmsk exon 33355102 33355241 16118 - . gene_id "HARLEQUIN_6p21.32"; transcript_id "HARLEQUIN_6p21.32"; locus "HARLEQUIN_6p21.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0085"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2035"; repStart "-4726"; ### ERVLE_6p21.32 ### chr6 rmsk gene 33491772 33494874 . + . gene_id "ERVLE_6p21.32"; transcript_id "ERVLE_6p21.32"; locus "ERVLE_6p21.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1589"; model_cov "1518"; model_pct "26.8"; chr6 rmsk exon 33491772 33491865 2718 + . gene_id "ERVLE_6p21.32"; transcript_id "ERVLE_6p21.32"; locus "ERVLE_6p21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1589"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-5265"; repStart "309"; chr6 rmsk exon 33491989 33493151 2718 + . gene_id "ERVLE_6p21.32"; transcript_id "ERVLE_6p21.32"; locus "ERVLE_6p21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1589"; repClass "LTR"; repEnd "1528"; repFamily "ERVL"; repLeft "-4139"; repStart "403"; chr6 rmsk exon 33494258 33494423 953 + . gene_id "ERVLE_6p21.32"; transcript_id "ERVLE_6p21.32"; locus "ERVLE_6p21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1589"; repClass "LTR"; repEnd "1963"; repFamily "ERVL"; repLeft "-3704"; repStart "1803"; chr6 rmsk exon 33494728 33494874 953 + . gene_id "ERVLE_6p21.32"; transcript_id "ERVLE_6p21.32"; locus "ERVLE_6p21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1589"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3563"; repStart "1964"; ### ERVLE_6p21.31a ### chr6 rmsk gene 33940363 33944337 . + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1590"; model_cov "2557"; model_pct "45.1"; chr6 rmsk exon 33940363 33940837 731 + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1590"; repClass "LTR"; repEnd "584"; repFamily "ERVL"; repLeft "-5083"; repStart "96"; chr6 rmsk exon 33940992 33941319 591 + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1590"; repClass "LTR"; repEnd "1186"; repFamily "ERVL"; repLeft "-4481"; repStart "857"; chr6 rmsk exon 33942194 33942513 1953 + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1590"; repClass "LTR"; repEnd "1848"; repFamily "ERVL"; repLeft "-3819"; repStart "1518"; chr6 rmsk exon 33942925 33943786 1953 + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1590"; repClass "LTR"; repEnd "2751"; repFamily "ERVL"; repLeft "-2916"; repStart "1849"; chr6 rmsk exon 33943871 33944337 666 + . gene_id "ERVLE_6p21.31a"; transcript_id "ERVLE_6p21.31a"; locus "ERVLE_6p21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1590"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "-2267"; repStart "2892"; ### ERV316A3_6p21.31 ### chr6 rmsk gene 34487488 34488731 . - . gene_id "ERV316A3_6p21.31"; transcript_id "ERV316A3_6p21.31"; locus "ERV316A3_6p21.31"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1218"; model_cov "773"; model_pct "14.8"; chr6 rmsk exon 34487488 34487891 1498 - . gene_id "ERV316A3_6p21.31"; transcript_id "ERV316A3_6p21.31"; locus "ERV316A3_6p21.31"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1218"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr6 rmsk exon 34487948 34488731 1926 - . gene_id "ERV316A3_6p21.31"; transcript_id "ERV316A3_6p21.31"; locus "ERV316A3_6p21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1218"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4403"; repStart "-50"; ### HARLEQUIN_6p21.31 ### chr6 rmsk gene 34998361 35004307 . + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0086"; model_cov "5336"; model_pct "77.4"; chr6 rmsk exon 34998361 34998835 2544 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 34999214 35000000 5848 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "1085"; repFamily "ERV1"; repLeft "-5811"; repStart "263"; chr6 rmsk exon 35000001 35000264 2004 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "1344"; repFamily "ERV1"; repLeft "-5552"; repStart "1086"; chr6 rmsk exon 35000246 35001248 7338 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1565"; chr6 rmsk exon 35001248 35001839 5034 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "3954"; repFamily "ERV1"; repLeft "-2942"; repStart "3352"; chr6 rmsk exon 35001831 35003823 9039 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "4251"; chr6 rmsk exon 35003824 35004307 2541 + . gene_id "HARLEQUIN_6p21.31"; transcript_id "HARLEQUIN_6p21.31"; locus "HARLEQUIN_6p21.31"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0086"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_6p21.31 ### chr6 rmsk gene 35106285 35108199 . - . gene_id "HML5_6p21.31"; transcript_id "HML5_6p21.31"; locus "HML5_6p21.31"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0047"; model_cov "1210"; model_pct "17.7"; chr6 rmsk exon 35106285 35107442 7489 - . gene_id "HML5_6p21.31"; transcript_id "HML5_6p21.31"; locus "HML5_6p21.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0047"; repClass "LTR"; repEnd "1211"; repFamily "ERVK"; repLeft "1"; repStart "-5626"; chr6 rmsk exon 35107443 35107573 3314 - . gene_id "HML5_6p21.31"; transcript_id "HML5_6p21.31"; locus "HML5_6p21.31"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0047"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "324"; repStart "0"; chr6 rmsk exon 35107881 35108199 3314 - . gene_id "HML5_6p21.31"; transcript_id "HML5_6p21.31"; locus "HML5_6p21.31"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0047"; repClass "LTR"; repEnd "323"; repFamily "ERVK"; repLeft "1"; repStart "-135"; ### ERVLE_6p21.31b ### chr6 rmsk gene 35123248 35127626 . + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1591"; model_cov "1911"; model_pct "33.7"; chr6 rmsk exon 35123248 35123489 2617 + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1591"; repClass "LTR"; repEnd "2911"; repFamily "ERVL"; repLeft "-2756"; repStart "2675"; chr6 rmsk exon 35123787 35123798 2617 + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1591"; repClass "LTR"; repEnd "2912"; repFamily "ERVL"; repLeft "-2755"; repStart "2912"; chr6 rmsk exon 35124094 35124618 2617 + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1591"; repClass "LTR"; repEnd "3409"; repFamily "ERVL"; repLeft "-2258"; repStart "2912"; chr6 rmsk exon 35126196 35126650 3981 + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1591"; repClass "LTR"; repEnd "4635"; repFamily "ERVL"; repLeft "-1032"; repStart "4182"; chr6 rmsk exon 35126957 35127626 3981 + . gene_id "ERVLE_6p21.31b"; transcript_id "ERVLE_6p21.31b"; locus "ERVLE_6p21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1591"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "-306"; repStart "4636"; ### ERVLE_6p21.31c ### chr6 rmsk gene 35536499 35539739 . + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1592"; model_cov "1732"; model_pct "30.6"; chr6 rmsk exon 35536499 35536802 3662 + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1592"; repClass "LTR"; repEnd "1332"; repFamily "ERVL"; repLeft "-4335"; repStart "1022"; chr6 rmsk exon 35537106 35537162 3662 + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1592"; repClass "LTR"; repEnd "1380"; repFamily "ERVL"; repLeft "-4287"; repStart "1333"; chr6 rmsk exon 35537468 35538149 3662 + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1592"; repClass "LTR"; repEnd "2070"; repFamily "ERVL"; repLeft "-3597"; repStart "1381"; chr6 rmsk exon 35538767 35538974 3662 + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1592"; repClass "LTR"; repEnd "2258"; repFamily "ERVL"; repLeft "-3409"; repStart "2071"; chr6 rmsk exon 35539246 35539739 3662 + . gene_id "ERVLE_6p21.31c"; transcript_id "ERVLE_6p21.31c"; locus "ERVLE_6p21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1592"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "-2909"; repStart "2259"; ### MER4_6p21.31 ### chr6 rmsk gene 35800496 35801904 . + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; category "internal"; intModel "MER4-int"; locid "MER4-int_0318"; model_cov "827"; model_pct "12.5"; chr6 rmsk exon 35800496 35800586 651 + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0318"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "596"; chr6 rmsk exon 35800609 35800703 1346 + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0318"; repClass "LTR"; repEnd "860"; repFamily "ERV1"; repLeft "-5738"; repStart "764"; chr6 rmsk exon 35801039 35801181 1346 + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0318"; repClass "LTR"; repEnd "1006"; repFamily "ERV1"; repLeft "-5592"; repStart "861"; chr6 rmsk exon 35801198 35801399 2217 + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0318"; repClass "LTR"; repEnd "1961"; repFamily "ERV1"; repLeft "-4637"; repStart "1764"; chr6 rmsk exon 35801637 35801904 2217 + . gene_id "MER4_6p21.31"; transcript_id "MER4_6p21.31"; locus "MER4_6p21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0318"; repClass "LTR"; repEnd "2261"; repFamily "ERV1"; repLeft "-4337"; repStart "1962"; ### ERVLE_6p21.31d ### chr6 rmsk gene 36172272 36173535 . + . gene_id "ERVLE_6p21.31d"; transcript_id "ERVLE_6p21.31d"; locus "ERVLE_6p21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1593"; model_cov "857"; model_pct "15.1"; chr6 rmsk exon 36172272 36172452 534 + . gene_id "ERVLE_6p21.31d"; transcript_id "ERVLE_6p21.31d"; locus "ERVLE_6p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1593"; repClass "LTR"; repEnd "3268"; repFamily "ERVL"; repLeft "-2399"; repStart "3085"; chr6 rmsk exon 36172477 36173127 1043 + . gene_id "ERVLE_6p21.31d"; transcript_id "ERVLE_6p21.31d"; locus "ERVLE_6p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1593"; repClass "LTR"; repEnd "4989"; repFamily "ERVL"; repLeft "-678"; repStart "4488"; chr6 rmsk exon 36173367 36173535 268 + . gene_id "ERVLE_6p21.31d"; transcript_id "ERVLE_6p21.31d"; locus "ERVLE_6p21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1593"; repClass "LTR"; repEnd "5403"; repFamily "ERVL"; repLeft "-264"; repStart "5230"; ### ERVLE_6p21.2a ### chr6 rmsk gene 36688707 36691575 . - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1594"; model_cov "2431"; model_pct "42.9"; chr6 rmsk exon 36688707 36689023 634 - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1594"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "2991"; repStart "-2345"; chr6 rmsk exon 36689210 36689331 405 - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1594"; repClass "LTR"; repEnd "3214"; repFamily "ERVL"; repLeft "3088"; repStart "-2453"; chr6 rmsk exon 36689339 36690480 1458 - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1594"; repClass "LTR"; repEnd "2874"; repFamily "ERVL"; repLeft "1718"; repStart "-2793"; chr6 rmsk exon 36690526 36690926 1144 - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1594"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "1437"; repStart "-3827"; chr6 rmsk exon 36691149 36691575 1144 - . gene_id "ERVLE_6p21.2a"; transcript_id "ERVLE_6p21.2a"; locus "ERVLE_6p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1594"; repClass "LTR"; repEnd "1436"; repFamily "ERVL"; repLeft "1021"; repStart "-4231"; ### PABLA_6p21.2 ### chr6 rmsk gene 36879007 36882287 . + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0053"; model_cov "2527"; model_pct "50.4"; chr6 rmsk exon 36879007 36879153 935 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "-2375"; repFamily "ERV1"; repLeft "-7390"; repStart "-2521"; chr6 rmsk exon 36879128 36880078 4067 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "756"; repFamily "ERV1"; repLeft "-4259"; repStart "-336"; chr6 rmsk exon 36880109 36880260 946 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "-3929"; repStart "935"; chr6 rmsk exon 36880257 36880307 255 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "314"; repFamily "ERV1"; repLeft "-4701"; repStart "259"; chr6 rmsk exon 36880289 36881390 6103 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "3031"; repFamily "ERV1"; repLeft "-1984"; repStart "2209"; chr6 rmsk exon 36881705 36882287 6103 + . gene_id "PABLA_6p21.2"; transcript_id "PABLA_6p21.2"; locus "PABLA_6p21.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0053"; repClass "LTR"; repEnd "3293"; repFamily "ERV1"; repLeft "-1722"; repStart "3032"; ### ERVLE_6p21.2b ### chr6 rmsk gene 37716148 37717322 . - . gene_id "ERVLE_6p21.2b"; transcript_id "ERVLE_6p21.2b"; locus "ERVLE_6p21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1595"; model_cov "860"; model_pct "15.2"; chr6 rmsk exon 37716148 37716718 1041 - . gene_id "ERVLE_6p21.2b"; transcript_id "ERVLE_6p21.2b"; locus "ERVLE_6p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1595"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5073"; repStart "0"; chr6 rmsk exon 37717024 37717091 1041 - . gene_id "ERVLE_6p21.2b"; transcript_id "ERVLE_6p21.2b"; locus "ERVLE_6p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1595"; repClass "LTR"; repEnd "5072"; repFamily "ERVL"; repLeft "4983"; repStart "-595"; chr6 rmsk exon 37717149 37717322 615 - . gene_id "ERVLE_6p21.2b"; transcript_id "ERVLE_6p21.2b"; locus "ERVLE_6p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1595"; repClass "LTR"; repEnd "4893"; repFamily "ERVL"; repLeft "4716"; repStart "-774"; ### HERV9_6p21.2 ### chr6 rmsk gene 38616529 38624486 . + . gene_id "HERV9_6p21.2"; transcript_id "HERV9_6p21.2"; locus "HERV9_6p21.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0068"; model_cov "7204"; model_pct "85.4"; chr6 rmsk exon 38616529 38616951 2847 + . gene_id "HERV9_6p21.2"; transcript_id "HERV9_6p21.2"; locus "HERV9_6p21.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0068"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 38616972 38622531 36545 + . gene_id "HERV9_6p21.2"; transcript_id "HERV9_6p21.2"; locus "HERV9_6p21.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0068"; repClass "LTR"; repEnd "5692"; repFamily "ERV1"; repLeft "-2744"; repStart "29"; chr6 rmsk exon 38622532 38624035 9766 + . gene_id "HERV9_6p21.2"; transcript_id "HERV9_6p21.2"; locus "HERV9_6p21.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0068"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6895"; chr6 rmsk exon 38624036 38624486 3148 + . gene_id "HERV9_6p21.2"; transcript_id "HERV9_6p21.2"; locus "HERV9_6p21.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0068"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6p21.2a ### chr6 rmsk gene 38660109 38662217 . + . gene_id "ERV316A3_6p21.2a"; transcript_id "ERV316A3_6p21.2a"; locus "ERV316A3_6p21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1219"; model_cov "1687"; model_pct "32.3"; chr6 rmsk exon 38660109 38661779 2936 + . gene_id "ERV316A3_6p21.2a"; transcript_id "ERV316A3_6p21.2a"; locus "ERV316A3_6p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1219"; repClass "LTR"; repEnd "2744"; repFamily "ERVL"; repLeft "-2482"; repStart "1161"; chr6 rmsk exon 38662114 38662217 391 + . gene_id "ERV316A3_6p21.2a"; transcript_id "ERV316A3_6p21.2a"; locus "ERV316A3_6p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1219"; repClass "LTR"; repEnd "2926"; repFamily "ERVL"; repLeft "-2300"; repStart "2822"; ### ERV316A3_6p21.2b ### chr6 rmsk gene 38662225 38663259 . - . gene_id "ERV316A3_6p21.2b"; transcript_id "ERV316A3_6p21.2b"; locus "ERV316A3_6p21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1220"; model_cov "990"; model_pct "18.9"; chr6 rmsk exon 38662225 38662689 3095 - . gene_id "ERV316A3_6p21.2b"; transcript_id "ERV316A3_6p21.2b"; locus "ERV316A3_6p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1220"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "4309"; repStart "-431"; chr6 rmsk exon 38662770 38663259 3095 - . gene_id "ERV316A3_6p21.2b"; transcript_id "ERV316A3_6p21.2b"; locus "ERV316A3_6p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1220"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "3804"; repStart "-918"; ### HERVH_6p21.2a ### chr6 rmsk gene 39121132 39122886 . + . gene_id "HERVH_6p21.2a"; transcript_id "HERVH_6p21.2a"; locus "HERVH_6p21.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0549"; model_cov "1427"; model_pct "18.5"; chr6 rmsk exon 39121132 39121997 6260 + . gene_id "HERVH_6p21.2a"; transcript_id "HERVH_6p21.2a"; locus "HERVH_6p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0549"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "-1696"; repStart "5146"; chr6 rmsk exon 39121990 39122534 3754 + . gene_id "HERVH_6p21.2a"; transcript_id "HERVH_6p21.2a"; locus "HERVH_6p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0549"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr6 rmsk exon 39122535 39122886 2216 + . gene_id "HERVH_6p21.2a"; transcript_id "HERVH_6p21.2a"; locus "HERVH_6p21.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0549"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### HERVH_6p21.2b ### chr6 rmsk gene 39131513 39136520 . - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0550"; model_cov "4373"; model_pct "56.7"; chr6 rmsk exon 39131513 39131947 2492 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 39131948 39132386 2884 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr6 rmsk exon 39132373 39134076 7311 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4416"; repStart "-1290"; chr6 rmsk exon 39134077 39134885 5112 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "2043"; repStart "-4883"; chr6 rmsk exon 39134876 39135562 3922 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "1478"; repFamily "ERV1"; repLeft "801"; repStart "-6235"; chr6 rmsk exon 39135590 39136071 1958 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6 rmsk exon 39136074 39136520 2311 - . gene_id "HERVH_6p21.2b"; transcript_id "HERVH_6p21.2b"; locus "HERVH_6p21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0550"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-21"; repStart "-2"; ### HERV3_6p21.2 ### chr6 rmsk gene 39993652 39999033 . - . gene_id "HERV3_6p21.2"; transcript_id "HERV3_6p21.2"; locus "HERV3_6p21.2"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0024"; model_cov "5310"; model_pct "63.0"; chr6 rmsk exon 39993652 39994366 3160 - . gene_id "HERV3_6p21.2"; transcript_id "HERV3_6p21.2"; locus "HERV3_6p21.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0024"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7708"; repStart "0"; chr6 rmsk exon 39994399 39999033 18096 - . gene_id "HERV3_6p21.2"; transcript_id "HERV3_6p21.2"; locus "HERV3_6p21.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0024"; repClass "LTR"; repEnd "4593"; repFamily "ERV1"; repLeft "1"; repStart "-3833"; ### HUERSP1_6p21.2 ### chr6 rmsk gene 40049241 40049884 . + . gene_id "HUERSP1_6p21.2"; transcript_id "HUERSP1_6p21.2"; locus "HUERSP1_6p21.2"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0076"; model_cov "1008"; model_pct "16.1"; chr6 rmsk exon 40049241 40049884 880 + . gene_id "HUERSP1_6p21.2"; transcript_id "HUERSP1_6p21.2"; locus "HUERSP1_6p21.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0076"; repClass "LTR"; repEnd "1196"; repFamily "ERV1"; repLeft "-5067"; repStart "188"; ### PABLB_6p21.2 ### chr6 rmsk gene 40050106 40052929 . + . gene_id "PABLB_6p21.2"; transcript_id "PABLB_6p21.2"; locus "PABLB_6p21.2"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0039"; model_cov "2531"; model_pct "35.5"; chr6 rmsk exon 40050106 40050838 403 + . gene_id "PABLB_6p21.2"; transcript_id "PABLB_6p21.2"; locus "PABLB_6p21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0039"; repClass "LTR"; repEnd "1720"; repFamily "ERV1"; repLeft "-5402"; repStart "976"; chr6 rmsk exon 40051235 40051343 314 + . gene_id "PABLB_6p21.2"; transcript_id "PABLB_6p21.2"; locus "PABLB_6p21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0039"; repClass "LTR"; repEnd "2101"; repFamily "ERV1"; repLeft "-5021"; repStart "1994"; chr6 rmsk exon 40051854 40052295 551 + . gene_id "PABLB_6p21.2"; transcript_id "PABLB_6p21.2"; locus "PABLB_6p21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0039"; repClass "LTR"; repEnd "4189"; repFamily "ERV1"; repLeft "-2933"; repStart "3411"; chr6 rmsk exon 40052390 40052929 662 + . gene_id "PABLB_6p21.2"; transcript_id "PABLB_6p21.2"; locus "PABLB_6p21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0039"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "-2027"; repStart "4193"; ### ERVLB4_6p21.2 ### chr6 rmsk gene 40097140 40097876 . + . gene_id "ERVLB4_6p21.2"; transcript_id "ERVLB4_6p21.2"; locus "ERVLB4_6p21.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0700"; model_cov "703"; model_pct "12.3"; chr6 rmsk exon 40097140 40097633 663 + . gene_id "ERVLB4_6p21.2"; transcript_id "ERVLB4_6p21.2"; locus "ERVLB4_6p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0700"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "-3219"; repStart "1972"; chr6 rmsk exon 40097706 40097876 433 + . gene_id "ERVLB4_6p21.2"; transcript_id "ERVLB4_6p21.2"; locus "ERVLB4_6p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0700"; repClass "LTR"; repEnd "3522"; repFamily "ERVL"; repLeft "-2192"; repStart "3342"; ### ERV316A3_6p21.2c ### chr6 rmsk gene 40112545 40116908 . + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1221"; model_cov "3103"; model_pct "59.4"; chr6 rmsk exon 40112545 40112953 951 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-7"; repStart "29"; chr6 rmsk exon 40113078 40113198 334 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "229"; repFamily "ERVL"; repLeft "-4997"; repStart "97"; chr6 rmsk exon 40113217 40113535 552 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "656"; repFamily "ERVL"; repLeft "-4570"; repStart "300"; chr6 rmsk exon 40113637 40113766 370 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "926"; repFamily "ERVL"; repLeft "-4300"; repStart "793"; chr6 rmsk exon 40113811 40113920 288 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "2751"; repFamily "ERVL"; repLeft "-2475"; repStart "2633"; chr6 rmsk exon 40114077 40114262 722 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "2975"; repFamily "ERVL"; repLeft "-2251"; repStart "2775"; chr6 rmsk exon 40114401 40116067 2747 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "-519"; repStart "3001"; chr6 rmsk exon 40116097 40116515 1014 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4766"; chr6 rmsk exon 40116518 40116908 484 + . gene_id "ERV316A3_6p21.2c"; transcript_id "ERV316A3_6p21.2c"; locus "ERV316A3_6p21.2c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1221"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-38"; repStart "1"; ### ERV316A3_6p21.2d ### chr6 rmsk gene 40123126 40126514 . + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1222"; model_cov "2159"; model_pct "41.3"; chr6 rmsk exon 40123126 40123986 500 + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1222"; repClass "LTR"; repEnd "2139"; repFamily "ERVL"; repLeft "-3087"; repStart "1152"; chr6 rmsk exon 40124940 40125088 489 + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1222"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "-2892"; repStart "2173"; chr6 rmsk exon 40125460 40125635 340 + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1222"; repClass "LTR"; repEnd "3011"; repFamily "ERVL"; repLeft "-2215"; repStart "2820"; chr6 rmsk exon 40125836 40126097 429 + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1222"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "-1699"; repStart "3067"; chr6 rmsk exon 40126171 40126514 800 + . gene_id "ERV316A3_6p21.2d"; transcript_id "ERV316A3_6p21.2d"; locus "ERV316A3_6p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1222"; repClass "LTR"; repEnd "4227"; repFamily "ERVL"; repLeft "-999"; repStart "3867"; ### HERVL32_6p21.2 ### chr6 rmsk gene 40129734 40135877 . + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0024"; model_cov "3645"; model_pct "100.0"; chr6 rmsk exon 40129734 40129801 325 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "3"; chr6 rmsk exon 40129813 40129967 568 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-72"; repStart "221"; chr6 rmsk exon 40129973 40133388 9681 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "923"; repFamily "ERVL"; repLeft "-2495"; repStart "-2603"; chr6 rmsk exon 40135509 40135618 413 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "0"; repStart "3299"; chr6 rmsk exon 40135622 40135687 340 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "1"; chr6 rmsk exon 40135694 40135877 792 + . gene_id "HERVL32_6p21.2"; transcript_id "HERVL32_6p21.2"; locus "HERVL32_6p21.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0024"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "-41"; repStart "217"; ### ERVLE_6p21.2c ### chr6 rmsk gene 40144681 40146320 . + . gene_id "ERVLE_6p21.2c"; transcript_id "ERVLE_6p21.2c"; locus "ERVLE_6p21.2c"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_1598"; model_cov "820"; model_pct "14.5"; chr6 rmsk exon 40144681 40144937 480 + . gene_id "ERVLE_6p21.2c"; transcript_id "ERVLE_6p21.2c"; locus "ERVLE_6p21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1598"; repClass "LTR"; repEnd "1579"; repFamily "ERVL"; repLeft "-4088"; repStart "1291"; chr6 rmsk exon 40145291 40145411 272 + . gene_id "ERVLE_6p21.2c"; transcript_id "ERVLE_6p21.2c"; locus "ERVLE_6p21.2c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1598"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "555"; chr6 rmsk exon 40145687 40145919 463 + . gene_id "ERVLE_6p21.2c"; transcript_id "ERVLE_6p21.2c"; locus "ERVLE_6p21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1598"; repClass "LTR"; repEnd "2223"; repFamily "ERVL"; repLeft "-3444"; repStart "1997"; chr6 rmsk exon 40146028 40146320 343 + . gene_id "ERVLE_6p21.2c"; transcript_id "ERVLE_6p21.2c"; locus "ERVLE_6p21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1598"; repClass "LTR"; repEnd "3044"; repFamily "ERVL"; repLeft "-2623"; repStart "2738"; ### ERVLE_6p21.2d ### chr6 rmsk gene 40218526 40222682 . + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1599"; model_cov "3313"; model_pct "58.5"; chr6 rmsk exon 40218526 40218854 1138 + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1599"; repClass "LTR"; repEnd "539"; repFamily "ERVL"; repLeft "-124"; repStart "192"; chr6 rmsk exon 40218960 40221039 7778 + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1599"; repClass "LTR"; repEnd "2186"; repFamily "ERVL"; repLeft "-3481"; repStart "-84"; chr6 rmsk exon 40221022 40221548 2523 + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1599"; repClass "LTR"; repEnd "5090"; repFamily "ERVL"; repLeft "-577"; repStart "4529"; chr6 rmsk exon 40221577 40222028 1963 + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1599"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "-26"; repStart "5159"; chr6 rmsk exon 40222651 40222682 231 + . gene_id "ERVLE_6p21.2d"; transcript_id "ERVLE_6p21.2d"; locus "ERVLE_6p21.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1599"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "632"; ### HERVH_6p21.1 ### chr6 rmsk gene 40861398 40868767 . - . gene_id "HERVH_6p21.1"; transcript_id "HERVH_6p21.1"; locus "HERVH_6p21.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0551"; model_cov "6375"; model_pct "82.7"; chr6 rmsk exon 40861398 40861829 2610 - . gene_id "HERVH_6p21.1"; transcript_id "HERVH_6p21.1"; locus "HERVH_6p21.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0551"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 40861830 40868245 42436 - . gene_id "HERVH_6p21.1"; transcript_id "HERVH_6p21.1"; locus "HERVH_6p21.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0551"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1338"; repStart "0"; chr6 rmsk exon 40868336 40868767 2537 - . gene_id "HERVH_6p21.1"; transcript_id "HERVH_6p21.1"; locus "HERVH_6p21.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0551"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_6p21.1 ### chr6 rmsk gene 41290897 41291520 . - . gene_id "MER41_6p21.1"; transcript_id "MER41_6p21.1"; locus "MER41_6p21.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0211"; model_cov "624"; model_pct "10.5"; chr6 rmsk exon 41290897 41291520 4014 - . gene_id "MER41_6p21.1"; transcript_id "MER41_6p21.1"; locus "MER41_6p21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0211"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "1"; repStart "-5321"; ### HUERSP1_6p21.1 ### chr6 rmsk gene 42059405 42062899 . - . gene_id "HUERSP1_6p21.1"; transcript_id "HUERSP1_6p21.1"; locus "HUERSP1_6p21.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0077"; model_cov "2745"; model_pct "43.8"; chr6 rmsk exon 42059405 42059844 4173 - . gene_id "HUERSP1_6p21.1"; transcript_id "HUERSP1_6p21.1"; locus "HUERSP1_6p21.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0077"; repClass "LTR"; repEnd "456"; repFamily "ERV1"; repLeft "1"; repStart "-235"; chr6 rmsk exon 42059846 42062529 20094 - . gene_id "HUERSP1_6p21.1"; transcript_id "HUERSP1_6p21.1"; locus "HUERSP1_6p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0077"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "3576"; repStart "-1"; chr6 rmsk exon 42062840 42062899 20094 - . gene_id "HUERSP1_6p21.1"; transcript_id "HUERSP1_6p21.1"; locus "HUERSP1_6p21.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0077"; repClass "LTR"; repEnd "3575"; repFamily "ERV1"; repLeft "3516"; repStart "-2688"; ### HML2_6p21.1 ### chr6 rmsk gene 42893671 42903629 . - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0050"; model_cov "7529"; model_pct "99.9"; chr6 rmsk exon 42893671 42894666 7663 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 42894674 42900373 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "7524"; repFamily "ERVK"; repLeft "1856"; repStart "-12"; chr6 rmsk exon 42900685 42901811 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1855"; repFamily "ERVK"; repLeft "743"; repStart "-5681"; chr6 rmsk exon 42901891 42902625 4270 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "9"; repStart "-6778"; chr6 rmsk exon 42902633 42903629 7599 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6p21.1a ### chr6 rmsk gene 42907134 42908768 . + . gene_id "ERVLE_6p21.1a"; transcript_id "ERVLE_6p21.1a"; locus "ERVLE_6p21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1601"; model_cov "1611"; model_pct "28.4"; chr6 rmsk exon 42907134 42907383 537 + . gene_id "ERVLE_6p21.1a"; transcript_id "ERVLE_6p21.1a"; locus "ERVLE_6p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1601"; repClass "LTR"; repEnd "642"; repFamily "ERVL"; repLeft "-5025"; repStart "388"; chr6 rmsk exon 42907426 42908133 1344 + . gene_id "ERVLE_6p21.1a"; transcript_id "ERVLE_6p21.1a"; locus "ERVLE_6p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1601"; repClass "LTR"; repEnd "1476"; repFamily "ERVL"; repLeft "-4191"; repStart "769"; chr6 rmsk exon 42908163 42908768 2137 + . gene_id "ERVLE_6p21.1a"; transcript_id "ERVLE_6p21.1a"; locus "ERVLE_6p21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1601"; repClass "LTR"; repEnd "4614"; repFamily "ERVL"; repLeft "-1053"; repStart "3964"; ### ERVLE_6p21.1b ### chr6 rmsk gene 43381215 43385701 . - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1602"; model_cov "2298"; model_pct "40.6"; chr6 rmsk exon 43381215 43381760 1244 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "5392"; repFamily "ERVL"; repLeft "4807"; repStart "-275"; chr6 rmsk exon 43383158 43383372 596 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "4325"; repStart "-1130"; chr6 rmsk exon 43383375 43383578 579 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "4140"; repFamily "ERVL"; repLeft "3947"; repStart "-1527"; chr6 rmsk exon 43384201 43384245 946 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "3821"; repFamily "ERVL"; repLeft "3777"; repStart "-1846"; chr6 rmsk exon 43384536 43384948 946 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "3776"; repFamily "ERVL"; repLeft "3319"; repStart "-1891"; chr6 rmsk exon 43385059 43385701 1087 - . gene_id "ERVLE_6p21.1b"; transcript_id "ERVLE_6p21.1b"; locus "ERVLE_6p21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1602"; repClass "LTR"; repEnd "3174"; repFamily "ERVL"; repLeft "2367"; repStart "-2493"; ### HERVP71A_6p21.1a ### chr6 rmsk gene 43390787 43393150 . + . gene_id "HERVP71A_6p21.1a"; transcript_id "HERVP71A_6p21.1a"; locus "HERVP71A_6p21.1a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0032"; model_cov "1744"; model_pct "23.0"; chr6 rmsk exon 43390787 43391249 3155 + . gene_id "HERVP71A_6p21.1a"; transcript_id "HERVP71A_6p21.1a"; locus "HERVP71A_6p21.1a"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0032"; repClass "LTR"; repEnd "491"; repFamily "ERV1"; repLeft "-119"; repStart "1"; chr6 rmsk exon 43391385 43391512 962 + . gene_id "HERVP71A_6p21.1a"; transcript_id "HERVP71A_6p21.1a"; locus "HERVP71A_6p21.1a"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0032"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "483"; chr6 rmsk exon 43391529 43393150 8588 + . gene_id "HERVP71A_6p21.1a"; transcript_id "HERVP71A_6p21.1a"; locus "HERVP71A_6p21.1a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0032"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-5828"; repStart "18"; ### HERVP71A_6p21.1b ### chr6 rmsk gene 43396148 43400430 . + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0033"; model_cov "2710"; model_pct "35.7"; chr6 rmsk exon 43396148 43397096 6179 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "4700"; repFamily "ERV1"; repLeft "-2890"; repStart "3751"; chr6 rmsk exon 43397095 43397163 8258 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-2380"; repStart "5142"; chr6 rmsk exon 43397454 43398399 8258 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "6165"; repFamily "ERV1"; repLeft "-1425"; repStart "5211"; chr6 rmsk exon 43398701 43398848 8258 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "6300"; repFamily "ERV1"; repLeft "-1290"; repStart "6166"; chr6 rmsk exon 43399162 43399771 8258 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "6906"; repFamily "ERV1"; repLeft "-684"; repStart "6301"; chr6 rmsk exon 43399833 43400430 4506 + . gene_id "HERVP71A_6p21.1b"; transcript_id "HERVP71A_6p21.1b"; locus "HERVP71A_6p21.1b"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0033"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_6p21.1 ### chr6 rmsk gene 44210586 44213812 . + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0179"; model_cov "1028"; model_pct "15.5"; chr6 rmsk exon 44210586 44210846 1414 + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0179"; repClass "LTR"; repEnd "2050"; repFamily "ERV1"; repLeft "-4589"; repStart "1786"; chr6 rmsk exon 44211121 44211446 1414 + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0179"; repClass "LTR"; repEnd "2971"; repFamily "ERV1"; repLeft "-3668"; repStart "2503"; chr6 rmsk exon 44212601 44212745 302 + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0179"; repClass "LTR"; repEnd "4040"; repFamily "ERV1"; repLeft "-2599"; repStart "3887"; chr6 rmsk exon 44213048 44213095 302 + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0179"; repClass "LTR"; repEnd "4092"; repFamily "ERV1"; repLeft "-2547"; repStart "4041"; chr6 rmsk exon 44213725 44213812 372 + . gene_id "MER101_6p21.1"; transcript_id "MER101_6p21.1"; locus "MER101_6p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0179"; repClass "LTR"; repEnd "4403"; repFamily "ERV1"; repLeft "-2236"; repStart "4311"; ### HML3_6p21.1 ### chr6 rmsk gene 45235730 45241700 . + . gene_id "HML3_6p21.1"; transcript_id "HML3_6p21.1"; locus "HML3_6p21.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0102"; model_cov "5076"; model_pct "84.3"; chr6 rmsk exon 45235730 45236234 3786 + . gene_id "HML3_6p21.1"; transcript_id "HML3_6p21.1"; locus "HML3_6p21.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0102"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 45236235 45236907 4993 + . gene_id "HML3_6p21.1"; transcript_id "HML3_6p21.1"; locus "HML3_6p21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0102"; repClass "LTR"; repEnd "693"; repFamily "ERVK"; repLeft "-5328"; repStart "1"; chr6 rmsk exon 45236893 45241193 26743 + . gene_id "HML3_6p21.1"; transcript_id "HML3_6p21.1"; locus "HML3_6p21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0102"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1637"; chr6 rmsk exon 45241194 45241700 3815 + . gene_id "HML3_6p21.1"; transcript_id "HML3_6p21.1"; locus "HML3_6p21.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0102"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_6p21.1c ### chr6 rmsk gene 46179764 46180883 . + . gene_id "ERVLE_6p21.1c"; transcript_id "ERVLE_6p21.1c"; locus "ERVLE_6p21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1604"; model_cov "1082"; model_pct "19.1"; chr6 rmsk exon 46179764 46180175 1010 + . gene_id "ERVLE_6p21.1c"; transcript_id "ERVLE_6p21.1c"; locus "ERVLE_6p21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1604"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "-1533"; repStart "3693"; chr6 rmsk exon 46180280 46180883 1744 + . gene_id "ERVLE_6p21.1c"; transcript_id "ERVLE_6p21.1c"; locus "ERVLE_6p21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1604"; repClass "LTR"; repEnd "5005"; repFamily "ERVL"; repLeft "-662"; repStart "4364"; ### ERV316A3_6p12.3a ### chr6 rmsk gene 47152770 47156944 . - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1223"; model_cov "2463"; model_pct "47.1"; chr6 rmsk exon 47152770 47152953 705 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "187"; repFamily "ERVL"; repLeft "5"; repStart "-264"; chr6 rmsk exon 47153052 47153440 956 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4740"; repStart "-85"; chr6 rmsk exon 47153526 47154549 3421 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "2074"; repFamily "ERVL"; repLeft "1075"; repStart "-3152"; chr6 rmsk exon 47154853 47155481 3421 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "1074"; repFamily "ERVL"; repLeft "441"; repStart "-4152"; chr6 rmsk exon 47155786 47155853 3421 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "383"; repStart "-4786"; chr6 rmsk exon 47156140 47156511 3421 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "9"; repStart "-4844"; chr6 rmsk exon 47156516 47156944 1241 - . gene_id "ERV316A3_6p12.3a"; transcript_id "ERV316A3_6p12.3a"; locus "ERV316A3_6p12.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1223"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_6p12.3a ### chr6 rmsk gene 47175690 47182207 . - . gene_id "HERVL_6p12.3a"; transcript_id "HERVL_6p12.3a"; locus "HERVL_6p12.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0583"; model_cov "5485"; model_pct "97.0"; chr6 rmsk exon 47175690 47176231 2215 - . gene_id "HERVL_6p12.3a"; transcript_id "HERVL_6p12.3a"; locus "HERVL_6p12.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0583"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr6 rmsk exon 47176232 47178332 15907 - . gene_id "HERVL_6p12.3a"; transcript_id "HERVL_6p12.3a"; locus "HERVL_6p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0583"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3550"; repStart "0"; chr6 rmsk exon 47178328 47181671 24243 - . gene_id "HERVL_6p12.3a"; transcript_id "HERVL_6p12.3a"; locus "HERVL_6p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0583"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "1"; repStart "-2272"; chr6 rmsk exon 47181672 47182207 1792 - . gene_id "HERVL_6p12.3a"; transcript_id "HERVL_6p12.3a"; locus "HERVL_6p12.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0583"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HML3_6p12.3 ### chr6 rmsk gene 47312692 47316775 . - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0103"; model_cov "3135"; model_pct "52.1"; chr6 rmsk exon 47312692 47313195 4216 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "505"; repFamily "ERVK"; repLeft "1"; repStart "-8"; chr6 rmsk exon 47313196 47313830 2653 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5294"; repStart "0"; chr6 rmsk exon 47313896 47314052 1301 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "3879"; repFamily "ERVK"; repLeft "3723"; repStart "-2142"; chr6 rmsk exon 47314053 47315698 13938 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1125"; repStart "-3223"; chr6 rmsk exon 47315700 47316263 4396 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr6 rmsk exon 47316264 47316775 4616 - . gene_id "HML3_6p12.3"; transcript_id "HML3_6p12.3"; locus "HML3_6p12.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0103"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_6p12.3 ### chr6 rmsk gene 47641260 47648143 . + . gene_id "HARLEQUIN_6p12.3"; transcript_id "HARLEQUIN_6p12.3"; locus "HARLEQUIN_6p12.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0088"; model_cov "6483"; model_pct "94.0"; chr6 rmsk exon 47641260 47647687 45868 + . gene_id "HARLEQUIN_6p12.3"; transcript_id "HARLEQUIN_6p12.3"; locus "HARLEQUIN_6p12.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0088"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "413"; chr6 rmsk exon 47647692 47648143 3411 + . gene_id "HARLEQUIN_6p12.3"; transcript_id "HARLEQUIN_6p12.3"; locus "HARLEQUIN_6p12.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0088"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "8"; ### ERV316A3_6p12.3b ### chr6 rmsk gene 48599818 48604298 . - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1224"; model_cov "2633"; model_pct "50.4"; chr6 rmsk exon 48599818 48600524 2027 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "3709"; repStart "-794"; chr6 rmsk exon 48601016 48601116 309 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3508"; repStart "-1614"; chr6 rmsk exon 48601236 48602261 2301 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "1781"; repStart "-2424"; chr6 rmsk exon 48602541 48603199 2301 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "1780"; repFamily "ERVL"; repLeft "1168"; repStart "-3446"; chr6 rmsk exon 48603182 48603349 284 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "851"; repStart "-4202"; chr6 rmsk exon 48603917 48604298 1068 - . gene_id "ERV316A3_6p12.3b"; transcript_id "ERV316A3_6p12.3b"; locus "ERV316A3_6p12.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1224"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "34"; repStart "-2"; ### LTR23_6p12.3 ### chr6 rmsk gene 48853508 48855356 . + . gene_id "LTR23_6p12.3"; transcript_id "LTR23_6p12.3"; locus "LTR23_6p12.3"; category "oneside"; intModel "LTR23-int"; locid "LTR23-int_0037"; model_cov "1728"; model_pct "33.7"; chr6 rmsk exon 48853508 48853620 666 + . gene_id "LTR23_6p12.3"; transcript_id "LTR23_6p12.3"; locus "LTR23_6p12.3"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0037"; repClass "LTR"; repEnd "3950"; repFamily "ERV1"; repLeft "-1173"; repStart "3837"; chr6 rmsk exon 48853908 48854028 735 + . gene_id "LTR23_6p12.3"; transcript_id "LTR23_6p12.3"; locus "LTR23_6p12.3"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0037"; repClass "LTR"; repEnd "4228"; repFamily "ERV1"; repLeft "-895"; repStart "4105"; chr6 rmsk exon 48854166 48854930 2330 + . gene_id "LTR23_6p12.3"; transcript_id "LTR23_6p12.3"; locus "LTR23_6p12.3"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0037"; repClass "LTR"; repEnd "4284"; repFamily "ERV1"; repLeft "-839"; repStart "2792"; chr6 rmsk exon 48855129 48855356 1220 + . gene_id "LTR23_6p12.3"; transcript_id "LTR23_6p12.3"; locus "LTR23_6p12.3"; repName "LTR23"; geneRegion "ltr"; locid "LTR23-int_0037"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "-199"; repStart "5"; ### HERVK14C_6p12.3 ### chr6 rmsk gene 48873676 48879725 . + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0011"; model_cov "4542"; model_pct "61.1"; chr6 rmsk exon 48873676 48874257 4562 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 48874258 48876040 14021 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "-5653"; repStart "1"; chr6 rmsk exon 48876044 48876679 5180 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4889"; repStart "1910"; chr6 rmsk exon 48876673 48877813 17426 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "6445"; repFamily "ERVK"; repLeft "-989"; repStart "5306"; chr6 rmsk exon 48878125 48879140 17426 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "6446"; chr6 rmsk exon 48879141 48879725 4517 + . gene_id "HERVK14C_6p12.3"; transcript_id "HERVK14C_6p12.3"; locus "HERVK14C_6p12.3"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0011"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_6p12.3c ### chr6 rmsk gene 49065537 49070971 . + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1225"; model_cov "1995"; model_pct "38.2"; chr6 rmsk exon 49065537 49066448 2408 + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1225"; repClass "LTR"; repEnd "1920"; repFamily "ERVL"; repLeft "-3306"; repStart "1060"; chr6 rmsk exon 49068835 49069569 2581 + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1225"; repClass "LTR"; repEnd "4380"; repFamily "ERVL"; repLeft "-846"; repStart "3645"; chr6 rmsk exon 49070018 49070106 282 + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1225"; repClass "LTR"; repEnd "4483"; repFamily "ERVL"; repLeft "-743"; repStart "4395"; chr6 rmsk exon 49070200 49070493 908 + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1225"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "4868"; chr6 rmsk exon 49070533 49070971 1581 + . gene_id "ERV316A3_6p12.3c"; transcript_id "ERV316A3_6p12.3c"; locus "ERV316A3_6p12.3c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1225"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6p12.3a ### chr6 rmsk gene 49360613 49362696 . - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1607"; model_cov "1591"; model_pct "28.1"; chr6 rmsk exon 49360613 49360805 440 - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1607"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "2511"; repStart "-2961"; chr6 rmsk exon 49360873 49361358 1208 - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1607"; repClass "LTR"; repEnd "2416"; repFamily "ERVL"; repLeft "1921"; repStart "-3251"; chr6 rmsk exon 49361591 49361886 583 - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1607"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "1262"; repStart "-4078"; chr6 rmsk exon 49361914 49362045 324 - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1607"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "1031"; repStart "-4492"; chr6 rmsk exon 49362290 49362696 366 - . gene_id "ERVLE_6p12.3a"; transcript_id "ERVLE_6p12.3a"; locus "ERVLE_6p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1607"; repClass "LTR"; repEnd "746"; repFamily "ERVL"; repLeft "316"; repStart "-4921"; ### HERVL_6p12.3b ### chr6 rmsk gene 49439021 49440123 . - . gene_id "HERVL_6p12.3b"; transcript_id "HERVL_6p12.3b"; locus "HERVL_6p12.3b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0584"; model_cov "1093"; model_pct "19.3"; chr6 rmsk exon 49439021 49440123 8639 - . gene_id "HERVL_6p12.3b"; transcript_id "HERVL_6p12.3b"; locus "HERVL_6p12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0584"; repClass "LTR"; repEnd "3578"; repFamily "ERVL"; repLeft "2485"; repStart "-2076"; ### HERVK11D_6p12.3 ### chr6 rmsk gene 49501278 49508842 . - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0013"; model_cov "5557"; model_pct "71.7"; chr6 rmsk exon 49501278 49502125 6709 - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0013"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 49502126 49506838 37217 - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0013"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "3054"; repStart "0"; chr6 rmsk exon 49506827 49507681 6442 - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0013"; repClass "LTR"; repEnd "860"; repFamily "ERVK"; repLeft "1"; repStart "-6892"; chr6 rmsk exon 49507682 49508054 6826 - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0013"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "514"; repStart "0"; chr6 rmsk exon 49508329 49508842 6826 - . gene_id "HERVK11D_6p12.3"; transcript_id "HERVK11D_6p12.3"; locus "HERVK11D_6p12.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0013"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "2"; repStart "-384"; ### PABLA_6p12.3 ### chr6 rmsk gene 49717615 49721439 . - . gene_id "PABLA_6p12.3"; transcript_id "PABLA_6p12.3"; locus "PABLA_6p12.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0055"; model_cov "3757"; model_pct "74.9"; chr6 rmsk exon 49717615 49720336 13607 - . gene_id "PABLA_6p12.3"; transcript_id "PABLA_6p12.3"; locus "PABLA_6p12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0055"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "1443"; repStart "-2"; chr6 rmsk exon 49720655 49721439 13607 - . gene_id "PABLA_6p12.3"; transcript_id "PABLA_6p12.3"; locus "PABLA_6p12.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0055"; repClass "LTR"; repEnd "2373"; repFamily "ERV1"; repLeft "2186"; repStart "-2642"; ### MER41_6p12.3 ### chr6 rmsk gene 49721416 49722594 . - . gene_id "MER41_6p12.3"; transcript_id "MER41_6p12.3"; locus "MER41_6p12.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0213"; model_cov "634"; model_pct "10.7"; chr6 rmsk exon 49721416 49722043 4121 - . gene_id "MER41_6p12.3"; transcript_id "MER41_6p12.3"; locus "MER41_6p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0213"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "1"; repStart "-5311"; chr6 rmsk exon 49722044 49722594 4175 - . gene_id "MER41_6p12.3"; transcript_id "MER41_6p12.3"; locus "MER41_6p12.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0213"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_6p12.3 ### chr6 rmsk gene 49886919 49891450 . - . gene_id "HML5_6p12.3"; transcript_id "HML5_6p12.3"; locus "HML5_6p12.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0048"; model_cov "3817"; model_pct "55.8"; chr6 rmsk exon 49886919 49887040 788 - . gene_id "HML5_6p12.3"; transcript_id "HML5_6p12.3"; locus "HML5_6p12.3"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0048"; repClass "LTR"; repEnd "127"; repFamily "ERVK"; repLeft "6"; repStart "-380"; chr6 rmsk exon 49887041 49890249 21358 - . gene_id "HML5_6p12.3"; transcript_id "HML5_6p12.3"; locus "HML5_6p12.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0048"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2294"; repStart "-1502"; chr6 rmsk exon 49890220 49890981 5189 - . gene_id "HML5_6p12.3"; transcript_id "HML5_6p12.3"; locus "HML5_6p12.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0048"; repClass "LTR"; repEnd "777"; repFamily "ERVK"; repLeft "1"; repStart "-6060"; chr6 rmsk exon 49890982 49891450 2412 - . gene_id "HML5_6p12.3"; transcript_id "HML5_6p12.3"; locus "HML5_6p12.3"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0048"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_6p12.3c ### chr6 rmsk gene 50356594 50359102 . + . gene_id "HERVL_6p12.3c"; transcript_id "HERVL_6p12.3c"; locus "HERVL_6p12.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0585"; model_cov "2134"; model_pct "37.7"; chr6 rmsk exon 50356594 50358202 11492 + . gene_id "HERVL_6p12.3c"; transcript_id "HERVL_6p12.3c"; locus "HERVL_6p12.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0585"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-433"; repStart "3518"; chr6 rmsk exon 50358232 50358656 11492 + . gene_id "HERVL_6p12.3c"; transcript_id "HERVL_6p12.3c"; locus "HERVL_6p12.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0585"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5222"; chr6 rmsk exon 50358658 50359102 3157 + . gene_id "HERVL_6p12.3c"; transcript_id "HERVL_6p12.3c"; locus "HERVL_6p12.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0585"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLE_6p12.3b ### chr6 rmsk gene 50361316 50363225 . - . gene_id "ERVLE_6p12.3b"; transcript_id "ERVLE_6p12.3b"; locus "ERVLE_6p12.3b"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1608"; model_cov "956"; model_pct "16.9"; chr6 rmsk exon 50361316 50361844 911 - . gene_id "ERVLE_6p12.3b"; transcript_id "ERVLE_6p12.3b"; locus "ERVLE_6p12.3b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1608"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "0"; repStart "0"; chr6 rmsk exon 50362115 50363023 3695 - . gene_id "ERVLE_6p12.3b"; transcript_id "ERVLE_6p12.3b"; locus "ERVLE_6p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1608"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "4216"; repStart "-495"; chr6 rmsk exon 50363033 50363225 708 - . gene_id "ERVLE_6p12.3b"; transcript_id "ERVLE_6p12.3b"; locus "ERVLE_6p12.3b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1608"; repClass "LTR"; repEnd "204"; repFamily "ERVL"; repLeft "1"; repStart "-424"; ### HERVL_6p12.3d ### chr6 rmsk gene 51051785 51058810 . + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0586"; model_cov "5648"; model_pct "99.9"; chr6 rmsk exon 51051785 51052228 3304 + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0586"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 51052229 51057626 39715 + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0586"; repClass "LTR"; repEnd "5490"; repFamily "ERVL"; repLeft "-164"; repStart "1"; chr6 rmsk exon 51058143 51058302 1049 + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0586"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5495"; chr6 rmsk exon 51058303 51058693 3067 + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0586"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr6 rmsk exon 51058771 51058810 3067 + . gene_id "HERVL_6p12.3d"; transcript_id "HERVL_6p12.3d"; locus "HERVL_6p12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0586"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "404"; ### HERVH_6p12.2 ### chr6 rmsk gene 51938241 51944426 . + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0552"; model_cov "5099"; model_pct "66.1"; chr6 rmsk exon 51938241 51938687 3047 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 51938691 51941236 15728 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "2643"; repFamily "ERV1"; repLeft "-5070"; repStart "1"; chr6 rmsk exon 51941555 51941927 15728 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "2994"; repFamily "ERV1"; repLeft "-4719"; repStart "2644"; chr6 rmsk exon 51941907 51942752 5656 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr6 rmsk exon 51942755 51943370 3173 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 51943402 51943606 1466 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr6 rmsk exon 51943607 51943982 2360 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 51943983 51944426 3012 + . gene_id "HERVH_6p12.2"; transcript_id "HERVH_6p12.2"; locus "HERVH_6p12.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0552"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6p12.2 ### chr6 rmsk gene 52322920 52324727 . - . gene_id "ERV316A3_6p12.2"; transcript_id "ERV316A3_6p12.2"; locus "ERV316A3_6p12.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1226"; model_cov "846"; model_pct "16.2"; chr6 rmsk exon 52322920 52323417 1818 - . gene_id "ERV316A3_6p12.2"; transcript_id "ERV316A3_6p12.2"; locus "ERV316A3_6p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1226"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "4445"; repStart "-239"; chr6 rmsk exon 52323719 52323804 1818 - . gene_id "ERV316A3_6p12.2"; transcript_id "ERV316A3_6p12.2"; locus "ERV316A3_6p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1226"; repClass "LTR"; repEnd "4444"; repFamily "ERVL"; repLeft "4349"; repStart "-782"; chr6 rmsk exon 52324511 52324727 1818 - . gene_id "ERV316A3_6p12.2"; transcript_id "ERV316A3_6p12.2"; locus "ERV316A3_6p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1226"; repClass "LTR"; repEnd "4348"; repFamily "ERVL"; repLeft "4139"; repStart "-878"; ### PABLA_6p12.2 ### chr6 rmsk gene 52705570 52709742 . + . gene_id "PABLA_6p12.2"; transcript_id "PABLA_6p12.2"; locus "PABLA_6p12.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0056"; model_cov "4739"; model_pct "94.5"; chr6 rmsk exon 52705570 52706175 3883 + . gene_id "PABLA_6p12.2"; transcript_id "PABLA_6p12.2"; locus "PABLA_6p12.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0056"; repClass "LTR"; repEnd "-310"; repFamily "ERV1"; repLeft "-5325"; repStart "-930"; chr6 rmsk exon 52706163 52708671 8125 + . gene_id "PABLA_6p12.2"; transcript_id "PABLA_6p12.2"; locus "PABLA_6p12.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0056"; repClass "LTR"; repEnd "4026"; repFamily "ERV1"; repLeft "-989"; repStart "703"; chr6 rmsk exon 52708967 52709742 5940 + . gene_id "PABLA_6p12.2"; transcript_id "PABLA_6p12.2"; locus "PABLA_6p12.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0056"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "-4"; repStart "4215"; ### HERVW_6p12.2 ### chr6 rmsk gene 52914876 52921914 . - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0132"; model_cov "5931"; model_pct "68.8"; chr6 rmsk exon 52914876 52915005 1063 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "130"; repFamily "ERV1"; repLeft "1"; repStart "-650"; chr6 rmsk exon 52915006 52915297 2376 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr6 rmsk exon 52915288 52915326 289 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr6 rmsk exon 52915320 52916932 30225 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4417"; repStart "-2607"; chr6 rmsk exon 52917231 52919208 30225 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "4416"; repFamily "ERV1"; repLeft "2430"; repStart "-4210"; chr6 rmsk exon 52919192 52921154 15048 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "2"; repStart "-6610"; chr6 rmsk exon 52921155 52921914 5829 - . gene_id "HERVW_6p12.2"; transcript_id "HERVW_6p12.2"; locus "HERVW_6p12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0132"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6p12.2 ### chr6 rmsk gene 52921915 52927154 . + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0025"; model_cov "3385"; model_pct "40.2"; chr6 rmsk exon 52921915 52922453 2489 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "1481"; repFamily "ERV1"; repLeft "-6945"; repStart "924"; chr6 rmsk exon 52923789 52924118 1705 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "-6346"; repStart "1721"; chr6 rmsk exon 52924351 52924705 1619 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "2417"; repFamily "ERV1"; repLeft "-6009"; repStart "2066"; chr6 rmsk exon 52925013 52925083 1619 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "-5957"; repStart "2418"; chr6 rmsk exon 52925083 52925208 489 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-4602"; repStart "3701"; chr6 rmsk exon 52925203 52926333 6570 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "6295"; repFamily "ERV1"; repLeft "-2131"; repStart "5149"; chr6 rmsk exon 52926408 52926518 1645 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "7116"; repFamily "ERV1"; repLeft "-1310"; repStart "7012"; chr6 rmsk exon 52926557 52927154 2026 + . gene_id "HERV3_6p12.2"; transcript_id "HERV3_6p12.2"; locus "HERV3_6p12.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0025"; repClass "LTR"; repEnd "8424"; repFamily "ERV1"; repLeft "-2"; repStart "7730"; ### MER101_6p12.1 ### chr6 rmsk gene 53083391 53090346 . - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; category "prototype"; intModel "MER101-int"; locid "MER101-int_0180"; model_cov "3686"; model_pct "55.5"; chr6 rmsk exon 53083391 53083806 2304 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0180"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 53083807 53084370 1041 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6005"; repStart "0"; chr6 rmsk exon 53084371 53085619 2663 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "4615"; repFamily "ERV1"; repLeft "3665"; repStart "-2024"; chr6 rmsk exon 53085624 53085867 4350 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "3532"; repStart "-2854"; chr6 rmsk exon 53086170 53086785 4350 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "3531"; repFamily "ERV1"; repLeft "2891"; repStart "-3108"; chr6 rmsk exon 53087372 53087506 4350 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "2890"; repFamily "ERV1"; repLeft "2760"; repStart "-3749"; chr6 rmsk exon 53087638 53088216 2199 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "2238"; repStart "-3877"; chr6 rmsk exon 53089377 53089866 774 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0180"; repClass "LTR"; repEnd "2394"; repFamily "ERV1"; repLeft "1839"; repStart "-4245"; chr6 rmsk exon 53089939 53090346 2307 - . gene_id "MER101_6p12.1"; transcript_id "MER101_6p12.1"; locus "MER101_6p12.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0180"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_6p12.1a ### chr6 rmsk gene 53416949 53420757 . + . gene_id "ERVLE_6p12.1a"; transcript_id "ERVLE_6p12.1a"; locus "ERVLE_6p12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1609"; model_cov "2931"; model_pct "51.7"; chr6 rmsk exon 53416949 53417715 2488 + . gene_id "ERVLE_6p12.1a"; transcript_id "ERVLE_6p12.1a"; locus "ERVLE_6p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1609"; repClass "LTR"; repEnd "1907"; repFamily "ERVL"; repLeft "-3760"; repStart "1080"; chr6 rmsk exon 53417885 53418400 2488 + . gene_id "ERVLE_6p12.1a"; transcript_id "ERVLE_6p12.1a"; locus "ERVLE_6p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1609"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "-3246"; repStart "1908"; chr6 rmsk exon 53419193 53420572 2087 + . gene_id "ERVLE_6p12.1a"; transcript_id "ERVLE_6p12.1a"; locus "ERVLE_6p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1609"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "-635"; repStart "3595"; chr6 rmsk exon 53420604 53420757 549 + . gene_id "ERVLE_6p12.1a"; transcript_id "ERVLE_6p12.1a"; locus "ERVLE_6p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1609"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "-391"; repStart "5122"; ### MER4_6p12.1 ### chr6 rmsk gene 53555820 53563424 . + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0322"; model_cov "7753"; model_pct "100.0"; chr6 rmsk exon 53555820 53556268 3361 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0322"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 53556270 53557208 2548 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "1018"; repFamily "ERV1"; repLeft "-5580"; repStart "1"; chr6 rmsk exon 53557207 53558529 7261 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1131"; chr6 rmsk exon 53558769 53559299 3945 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "3302"; repFamily "ERV1"; repLeft "-3296"; repStart "2737"; chr6 rmsk exon 53559615 53559753 3945 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "3443"; repFamily "ERV1"; repLeft "-3155"; repStart "3303"; chr6 rmsk exon 53560050 53560290 3945 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "3444"; chr6 rmsk exon 53560290 53562974 15967 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0322"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "2165"; chr6 rmsk exon 53562976 53563424 3199 + . gene_id "MER4_6p12.1"; transcript_id "MER4_6p12.1"; locus "MER4_6p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0322"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_6p12.1b ### chr6 rmsk gene 55378263 55378866 . - . gene_id "ERVLE_6p12.1b"; transcript_id "ERVLE_6p12.1b"; locus "ERVLE_6p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1612"; model_cov "636"; model_pct "11.2"; chr6 rmsk exon 55378263 55378540 750 - . gene_id "ERVLE_6p12.1b"; transcript_id "ERVLE_6p12.1b"; locus "ERVLE_6p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1612"; repClass "LTR"; repEnd "4337"; repFamily "ERVL"; repLeft "4038"; repStart "-1330"; chr6 rmsk exon 55378549 55378866 623 - . gene_id "ERVLE_6p12.1b"; transcript_id "ERVLE_6p12.1b"; locus "ERVLE_6p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1612"; repClass "LTR"; repEnd "4276"; repFamily "ERVL"; repLeft "3939"; repStart "-1391"; ### HERVL_6p12.1 ### chr6 rmsk gene 55624104 55627881 . + . gene_id "HERVL_6p12.1"; transcript_id "HERVL_6p12.1"; locus "HERVL_6p12.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0589"; model_cov "3415"; model_pct "60.4"; chr6 rmsk exon 55624104 55627500 26005 + . gene_id "HERVL_6p12.1"; transcript_id "HERVL_6p12.1"; locus "HERVL_6p12.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0589"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2239"; chr6 rmsk exon 55627501 55627881 2833 + . gene_id "HERVL_6p12.1"; transcript_id "HERVL_6p12.1"; locus "HERVL_6p12.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0589"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### ERVLE_6p12.1c ### chr6 rmsk gene 55801103 55804074 . + . gene_id "ERVLE_6p12.1c"; transcript_id "ERVLE_6p12.1c"; locus "ERVLE_6p12.1c"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1613"; model_cov "1300"; model_pct "22.9"; chr6 rmsk exon 55801103 55801640 1423 + . gene_id "ERVLE_6p12.1c"; transcript_id "ERVLE_6p12.1c"; locus "ERVLE_6p12.1c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1613"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "-55"; repStart "3"; chr6 rmsk exon 55801648 55802733 4347 + . gene_id "ERVLE_6p12.1c"; transcript_id "ERVLE_6p12.1c"; locus "ERVLE_6p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1613"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-351"; repStart "4199"; chr6 rmsk exon 55802788 55802964 4347 + . gene_id "ERVLE_6p12.1c"; transcript_id "ERVLE_6p12.1c"; locus "ERVLE_6p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1613"; repClass "LTR"; repEnd "5500"; repFamily "ERVL"; repLeft "-167"; repStart "5317"; chr6 rmsk exon 55803388 55804074 1345 + . gene_id "ERVLE_6p12.1c"; transcript_id "ERVLE_6p12.1c"; locus "ERVLE_6p12.1c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1613"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "-18"; repStart "1"; ### HERVH_6p12.1 ### chr6 rmsk gene 56010739 56016786 . - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0553"; model_cov "5638"; model_pct "73.1"; chr6 rmsk exon 56010739 56012338 6980 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "7570"; repFamily "ERV1"; repLeft "5769"; repStart "-143"; chr6 rmsk exon 56012325 56012513 1220 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr6 rmsk exon 56012516 56013013 3122 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 56013004 56013153 983 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 56013133 56016385 16239 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 56016388 56016786 2699 - . gene_id "HERVH_6p12.1"; transcript_id "HERVH_6p12.1"; locus "HERVH_6p12.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0553"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML5_6p12.1 ### chr6 rmsk gene 57069873 57074762 . + . gene_id "HML5_6p12.1"; transcript_id "HML5_6p12.1"; locus "HML5_6p12.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0049"; model_cov "5308"; model_pct "77.6"; chr6 rmsk exon 57069873 57070344 2493 + . gene_id "HML5_6p12.1"; transcript_id "HML5_6p12.1"; locus "HML5_6p12.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0049"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 57070345 57071120 5143 + . gene_id "HML5_6p12.1"; transcript_id "HML5_6p12.1"; locus "HML5_6p12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0049"; repClass "LTR"; repEnd "786"; repFamily "ERVK"; repLeft "-6051"; repStart "1"; chr6 rmsk exon 57071114 57074287 21086 + . gene_id "HML5_6p12.1"; transcript_id "HML5_6p12.1"; locus "HML5_6p12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0049"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2314"; chr6 rmsk exon 57074289 57074762 2692 + . gene_id "HML5_6p12.1"; transcript_id "HML5_6p12.1"; locus "HML5_6p12.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0049"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HERVL_6p11.2 ### chr6 rmsk gene 57664143 57666573 . + . gene_id "HERVL_6p11.2"; transcript_id "HERVL_6p11.2"; locus "HERVL_6p11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0590"; model_cov "2061"; model_pct "36.5"; chr6 rmsk exon 57664143 57666184 16034 + . gene_id "HERVL_6p11.2"; transcript_id "HERVL_6p11.2"; locus "HERVL_6p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0590"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3593"; chr6 rmsk exon 57666185 57666573 2794 + . gene_id "HERVL_6p11.2"; transcript_id "HERVL_6p11.2"; locus "HERVL_6p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0590"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### HERVK11_6p11.2 ### chr6 rmsk gene 58399982 58403956 . + . gene_id "HERVK11_6p11.2"; transcript_id "HERVK11_6p11.2"; locus "HERVK11_6p11.2"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0040"; model_cov "4012"; model_pct "50.4"; chr6 rmsk exon 58399982 58400302 2171 + . gene_id "HERVK11_6p11.2"; transcript_id "HERVK11_6p11.2"; locus "HERVK11_6p11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0040"; repClass "LTR"; repEnd "321"; repFamily "ERVK"; repLeft "-7632"; repStart "1"; chr6 rmsk exon 58400298 58403956 26154 + . gene_id "HERVK11_6p11.2"; transcript_id "HERVK11_6p11.2"; locus "HERVK11_6p11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0040"; repClass "LTR"; repEnd "3898"; repFamily "ERVK"; repLeft "-4055"; repStart "206"; ### HML3_6p11.2 ### chr6 rmsk gene 58412696 58419708 . - . gene_id "HML3_6p11.2"; transcript_id "HML3_6p11.2"; locus "HML3_6p11.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0104"; model_cov "6015"; model_pct "99.9"; chr6 rmsk exon 58412696 58413199 3525 - . gene_id "HML3_6p11.2"; transcript_id "HML3_6p11.2"; locus "HML3_6p11.2"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0104"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 58413200 58419186 45651 - . gene_id "HML3_6p11.2"; transcript_id "HML3_6p11.2"; locus "HML3_6p11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0104"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "6"; repStart "0"; chr6 rmsk exon 58419196 58419708 3701 - . gene_id "HML3_6p11.2"; transcript_id "HML3_6p11.2"; locus "HML3_6p11.2"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0104"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### PRIMAX_6q11.1 ### chr6 rmsk gene 60485646 60486423 . - . gene_id "PRIMAX_6q11.1"; transcript_id "PRIMAX_6q11.1"; locus "PRIMAX_6q11.1"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0015"; model_cov "440"; model_pct "10.7"; chr6 rmsk exon 60485646 60485939 420 - . gene_id "PRIMAX_6q11.1"; transcript_id "PRIMAX_6q11.1"; locus "PRIMAX_6q11.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0015"; repClass "LTR"; repEnd "2115"; repFamily "ERV1"; repLeft "1854"; repStart "-1987"; chr6 rmsk exon 60486239 60486423 281 - . gene_id "PRIMAX_6q11.1"; transcript_id "PRIMAX_6q11.1"; locus "PRIMAX_6q11.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0015"; repClass "LTR"; repEnd "-187"; repFamily "ERV1"; repLeft "-366"; repStart "-4289"; ### HERVL_6q11.1a ### chr6 rmsk gene 60562941 60565366 . + . gene_id "HERVL_6q11.1a"; transcript_id "HERVL_6q11.1a"; locus "HERVL_6q11.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0592"; model_cov "2061"; model_pct "36.5"; chr6 rmsk exon 60562941 60564974 15790 + . gene_id "HERVL_6q11.1a"; transcript_id "HERVL_6q11.1a"; locus "HERVL_6q11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0592"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3593"; chr6 rmsk exon 60564977 60565366 2693 + . gene_id "HERVL_6q11.1a"; transcript_id "HERVL_6q11.1a"; locus "HERVL_6q11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0592"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "3"; ### HML2_6q11.1 ### chr6 rmsk gene 60654987 60660975 . + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0051"; model_cov "3472"; model_pct "46.1"; chr6 rmsk exon 60654987 60656012 8037 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 60656013 60656707 3744 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "1"; chr6 rmsk exon 60656834 60659432 16583 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "5613"; repFamily "ERVK"; repLeft "-1923"; repStart "3007"; chr6 rmsk exon 60659770 60659941 1027 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "7528"; repFamily "ERVK"; repLeft "-8"; repStart "7357"; chr6 rmsk exon 60659956 60660975 7824 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_6q11.1a ### chr6 rmsk gene 61208004 61212425 . - . gene_id "MER4_6q11.1a"; transcript_id "MER4_6q11.1a"; locus "MER4_6q11.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0323"; model_cov "5688"; model_pct "86.2"; chr6 rmsk exon 61208004 61211857 13250 - . gene_id "MER4_6q11.1a"; transcript_id "MER4_6q11.1a"; locus "MER4_6q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0323"; repClass "LTR"; repEnd "6011"; repFamily "ERV1"; repLeft "786"; repStart "-587"; chr6 rmsk exon 61211859 61212425 2013 - . gene_id "MER4_6q11.1a"; transcript_id "MER4_6q11.1a"; locus "MER4_6q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0323"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "2401"; repStart "-3734"; ### MER4_6q11.1b ### chr6 rmsk gene 61212615 61214270 . - . gene_id "MER4_6q11.1b"; transcript_id "MER4_6q11.1b"; locus "MER4_6q11.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0324"; model_cov "1350"; model_pct "20.5"; chr6 rmsk exon 61212615 61212702 543 - . gene_id "MER4_6q11.1b"; transcript_id "MER4_6q11.1b"; locus "MER4_6q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0324"; repClass "LTR"; repEnd "3384"; repFamily "ERV1"; repLeft "3298"; repStart "-3214"; chr6 rmsk exon 61212699 61213131 1614 - . gene_id "MER4_6q11.1b"; transcript_id "MER4_6q11.1b"; locus "MER4_6q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0324"; repClass "LTR"; repEnd "2550"; repFamily "ERV1"; repLeft "2111"; repStart "-4048"; chr6 rmsk exon 61213167 61213812 2385 - . gene_id "MER4_6q11.1b"; transcript_id "MER4_6q11.1b"; locus "MER4_6q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0324"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "-5772"; chr6 rmsk exon 61213819 61214270 2801 - . gene_id "MER4_6q11.1b"; transcript_id "MER4_6q11.1b"; locus "MER4_6q11.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0324"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HERVK11_6q11.1 ### chr6 rmsk gene 61274536 61278498 . + . gene_id "HERVK11_6q11.1"; transcript_id "HERVK11_6q11.1"; locus "HERVK11_6q11.1"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0041"; model_cov "4006"; model_pct "50.4"; chr6 rmsk exon 61274536 61274854 2067 + . gene_id "HERVK11_6q11.1"; transcript_id "HERVK11_6q11.1"; locus "HERVK11_6q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0041"; repClass "LTR"; repEnd "321"; repFamily "ERVK"; repLeft "-7632"; repStart "1"; chr6 rmsk exon 61274850 61278498 25759 + . gene_id "HERVK11_6q11.1"; transcript_id "HERVK11_6q11.1"; locus "HERVK11_6q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0041"; repClass "LTR"; repEnd "3892"; repFamily "ERVK"; repLeft "-4061"; repStart "206"; ### HML3_6q11.1a ### chr6 rmsk gene 61287260 61294257 . - . gene_id "HML3_6q11.1a"; transcript_id "HML3_6q11.1a"; locus "HML3_6q11.1a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0105"; model_cov "6020"; model_pct "100.0"; chr6 rmsk exon 61287260 61287763 3378 - . gene_id "HML3_6q11.1a"; transcript_id "HML3_6q11.1a"; locus "HML3_6q11.1a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0105"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 61287764 61293742 45088 - . gene_id "HML3_6q11.1a"; transcript_id "HML3_6q11.1a"; locus "HML3_6q11.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0105"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 61293743 61294257 3700 - . gene_id "HML3_6q11.1a"; transcript_id "HML3_6q11.1a"; locus "HML3_6q11.1a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0105"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_6q11.1b ### chr6 rmsk gene 61496710 61497903 . - . gene_id "HML3_6q11.1b"; transcript_id "HML3_6q11.1b"; locus "HML3_6q11.1b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0106"; model_cov "686"; model_pct "11.4"; chr6 rmsk exon 61496710 61497217 3426 - . gene_id "HML3_6q11.1b"; transcript_id "HML3_6q11.1b"; locus "HML3_6q11.1b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0106"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "2"; repStart "-2"; chr6 rmsk exon 61497219 61497903 5032 - . gene_id "HML3_6q11.1b"; transcript_id "HML3_6q11.1b"; locus "HML3_6q11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0106"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5335"; repStart "0"; ### HERVH_6q11.1a ### chr6 rmsk gene 61600186 61606272 . + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0554"; model_cov "5261"; model_pct "68.2"; chr6 rmsk exon 61600186 61600634 3109 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 61600637 61601232 2486 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-7153"; repStart "1"; chr6 rmsk exon 61601221 61603501 14633 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "756"; chr6 rmsk exon 61603499 61605216 7792 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4563"; chr6 rmsk exon 61605218 61605453 1253 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "5824"; repFamily "ERV1"; repLeft "-1889"; repStart "5600"; chr6 rmsk exon 61605448 61605823 2257 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 61605824 61606272 3182 + . gene_id "HERVH_6q11.1a"; transcript_id "HERVH_6q11.1a"; locus "HERVH_6q11.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0554"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6q11.1 ### chr6 rmsk gene 61620600 61625817 . + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1229"; model_cov "3982"; model_pct "76.2"; chr6 rmsk exon 61620600 61621044 876 + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1229"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr6 rmsk exon 61621163 61621632 1127 + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1229"; repClass "LTR"; repEnd "575"; repFamily "ERVL"; repLeft "-4651"; repStart "93"; chr6 rmsk exon 61622186 61623309 2984 + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1229"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "-3137"; repStart "813"; chr6 rmsk exon 61623313 61625363 3306 + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1229"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "-29"; repStart "2973"; chr6 rmsk exon 61625386 61625817 899 + . gene_id "ERV316A3_6q11.1"; transcript_id "ERV316A3_6q11.1"; locus "ERV316A3_6q11.1"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1229"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_6q11.1b ### chr6 rmsk gene 62118534 62122755 . + . gene_id "HERVL_6q11.1b"; transcript_id "HERVL_6q11.1b"; locus "HERVL_6q11.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0594"; model_cov "3717"; model_pct "65.7"; chr6 rmsk exon 62118534 62119038 1712 + . gene_id "HERVL_6q11.1b"; transcript_id "HERVL_6q11.1b"; locus "HERVL_6q11.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0594"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 62119039 62122755 26516 + . gene_id "HERVL_6q11.1b"; transcript_id "HERVL_6q11.1b"; locus "HERVL_6q11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0594"; repClass "LTR"; repEnd "3718"; repFamily "ERVL"; repLeft "-1936"; repStart "1"; ### HERVH_6q11.1b ### chr6 rmsk gene 62585932 62591724 . + . gene_id "HERVH_6q11.1b"; transcript_id "HERVH_6q11.1b"; locus "HERVH_6q11.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0555"; model_cov "4982"; model_pct "64.6"; chr6 rmsk exon 62585932 62586380 2830 + . gene_id "HERVH_6q11.1b"; transcript_id "HERVH_6q11.1b"; locus "HERVH_6q11.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0555"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 62586383 62588219 12631 + . gene_id "HERVH_6q11.1b"; transcript_id "HERVH_6q11.1b"; locus "HERVH_6q11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0555"; repClass "LTR"; repEnd "1863"; repFamily "ERV1"; repLeft "-5850"; repStart "1"; chr6 rmsk exon 62588207 62591328 24390 + . gene_id "HERVH_6q11.1b"; transcript_id "HERVH_6q11.1b"; locus "HERVH_6q11.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0555"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4593"; chr6 rmsk exon 62591329 62591724 2619 + . gene_id "HERVH_6q11.1b"; transcript_id "HERVH_6q11.1b"; locus "HERVH_6q11.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0555"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_6q11.1 ### chr6 rmsk gene 62596365 62597249 . + . gene_id "ERVL_6q11.1"; transcript_id "ERVL_6q11.1"; locus "ERVL_6q11.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0166"; model_cov "652"; model_pct "11.3"; chr6 rmsk exon 62596365 62596859 728 + . gene_id "ERVL_6q11.1"; transcript_id "ERVL_6q11.1"; locus "ERVL_6q11.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0166"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "-1219"; repStart "4038"; chr6 rmsk exon 62597098 62597249 295 + . gene_id "ERVL_6q11.1"; transcript_id "ERVL_6q11.1"; locus "ERVL_6q11.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0166"; repClass "LTR"; repEnd "4996"; repFamily "ERVL"; repLeft "-761"; repStart "4844"; ### HERVFRD_6q11.2 ### chr6 rmsk gene 62611316 62616160 . - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0074"; model_cov "1665"; model_pct "23.1"; chr6 rmsk exon 62611316 62611465 522 - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0074"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "1634"; repStart "-5413"; chr6 rmsk exon 62611552 62611613 288 - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0074"; repClass "LTR"; repEnd "1618"; repFamily "ERV1"; repLeft "1555"; repStart "-5587"; chr6 rmsk exon 62611818 62613170 4714 - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0074"; repClass "LTR"; repEnd "1450"; repFamily "ERV1"; repLeft "124"; repStart "-5755"; chr6 rmsk exon 62615410 62615528 4714 - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0074"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "5"; repStart "-7082"; chr6 rmsk exon 62615628 62616160 2499 - . gene_id "HERVFRD_6q11.2"; transcript_id "HERVFRD_6q11.2"; locus "HERVFRD_6q11.2"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0074"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "1"; repStart "-157"; ### HERVL_6q11.2 ### chr6 rmsk gene 62649160 62650315 . + . gene_id "HERVL_6q11.2"; transcript_id "HERVL_6q11.2"; locus "HERVL_6q11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0595"; model_cov "633"; model_pct "11.2"; chr6 rmsk exon 62649160 62649789 4725 + . gene_id "HERVL_6q11.2"; transcript_id "HERVL_6q11.2"; locus "HERVL_6q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0595"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5021"; chr6 rmsk exon 62649790 62650242 2713 + . gene_id "HERVL_6q11.2"; transcript_id "HERVL_6q11.2"; locus "HERVL_6q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0595"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-38"; repStart "-110"; chr6 rmsk exon 62650272 62650315 292 + . gene_id "HERVL_6q11.2"; transcript_id "HERVL_6q11.2"; locus "HERVL_6q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0595"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "407"; ### MER61_6q11.2 ### chr6 rmsk gene 62650316 62651942 . - . gene_id "MER61_6q11.2"; transcript_id "MER61_6q11.2"; locus "MER61_6q11.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0172"; model_cov "2036"; model_pct "39.0"; chr6 rmsk exon 62650316 62651942 7418 - . gene_id "MER61_6q11.2"; transcript_id "MER61_6q11.2"; locus "MER61_6q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0172"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "-1592"; repStart "-4773"; ### LTR25_6q11.2 ### chr6 rmsk gene 62652655 62654313 . - . gene_id "LTR25_6q11.2"; transcript_id "LTR25_6q11.2"; locus "LTR25_6q11.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0051"; model_cov "1719"; model_pct "23.9"; chr6 rmsk exon 62652655 62654313 9071 - . gene_id "LTR25_6q11.2"; transcript_id "LTR25_6q11.2"; locus "LTR25_6q11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0051"; repClass "LTR"; repEnd "1724"; repFamily "ERV1"; repLeft "5"; repStart "-5464"; ### HERVH_6q12a ### chr6 rmsk gene 62791671 62797450 . + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0556"; model_cov "5209"; model_pct "67.5"; chr6 rmsk exon 62791671 62792025 2040 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 62792028 62794923 14707 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 62794903 62795052 869 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 62795043 62795284 1546 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "3734"; repFamily "ERV1"; repLeft "-3979"; repStart "3492"; chr6 rmsk exon 62795280 62796449 7680 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3936"; chr6 rmsk exon 62796451 62796666 1400 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 62796665 62797041 2118 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 62797042 62797450 2726 + . gene_id "HERVH_6q12a"; transcript_id "HERVH_6q12a"; locus "HERVH_6q12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0556"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_6q12b ### chr6 rmsk gene 63005488 63011448 . + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0557"; model_cov "5177"; model_pct "67.1"; chr6 rmsk exon 63005488 63005877 1921 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chr6 rmsk exon 63005886 63006351 2794 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr6 rmsk exon 63006401 63008723 13838 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "730"; chr6 rmsk exon 63008721 63010425 7920 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4563"; chr6 rmsk exon 63010430 63010649 1435 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 63010654 63011039 2439 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7328"; chr6 rmsk exon 63011040 63011448 2250 + . gene_id "HERVH_6q12b"; transcript_id "HERVH_6q12b"; locus "HERVH_6q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0557"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV9_6q12 ### chr6 rmsk gene 63077502 63086745 . - . gene_id "HERV9_6q12"; transcript_id "HERV9_6q12"; locus "HERV9_6q12"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0069"; model_cov "8381"; model_pct "99.3"; chr6 rmsk exon 63077502 63077955 3228 - . gene_id "HERV9_6q12"; transcript_id "HERV9_6q12"; locus "HERV9_6q12"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0069"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 63077956 63086277 64280 - . gene_id "HERV9_6q12"; transcript_id "HERV9_6q12"; locus "HERV9_6q12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0069"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "55"; repStart "0"; chr6 rmsk exon 63086298 63086745 3070 - . gene_id "HERV9_6q12"; transcript_id "HERV9_6q12"; locus "HERV9_6q12"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0069"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_6q12a ### chr6 rmsk gene 63132340 63138823 . - . gene_id "HERVL_6q12a"; transcript_id "HERVL_6q12a"; locus "HERVL_6q12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0597"; model_cov "5625"; model_pct "99.5"; chr6 rmsk exon 63132340 63132741 2932 - . gene_id "HERVL_6q12a"; transcript_id "HERVL_6q12a"; locus "HERVL_6q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0597"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-45"; chr6 rmsk exon 63132742 63138316 42840 - . gene_id "HERVL_6q12a"; transcript_id "HERVL_6q12a"; locus "HERVL_6q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0597"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "29"; repStart "0"; chr6 rmsk exon 63138345 63138823 2902 - . gene_id "HERVL_6q12a"; transcript_id "HERVL_6q12a"; locus "HERVL_6q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0597"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_6q12a ### chr6 rmsk gene 63236399 63239138 . + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1231"; model_cov "687"; model_pct "13.1"; chr6 rmsk exon 63236399 63236567 1130 + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1231"; repClass "LTR"; repEnd "4103"; repFamily "ERVL"; repLeft "-1123"; repStart "3936"; chr6 rmsk exon 63237120 63237464 1130 + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1231"; repClass "LTR"; repEnd "4456"; repFamily "ERVL"; repLeft "-770"; repStart "4104"; chr6 rmsk exon 63238163 63238330 305 + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1231"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "-617"; repStart "4441"; chr6 rmsk exon 63238672 63238796 383 + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1231"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "-435"; repStart "1"; chr6 rmsk exon 63238841 63239138 1014 + . gene_id "ERV316A3_6q12a"; transcript_id "ERV316A3_6q12a"; locus "ERV316A3_6q12a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1231"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "-35"; repStart "242"; ### HERVH_6q12c ### chr6 rmsk gene 63950227 63956522 . + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0558"; model_cov "5808"; model_pct "75.3"; chr6 rmsk exon 63950227 63950593 2254 + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0558"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 63950594 63955223 19662 + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0558"; repClass "LTR"; repEnd "4863"; repFamily "ERV1"; repLeft "-2850"; repStart "1"; chr6 rmsk exon 63955221 63955607 2185 + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0558"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5626"; chr6 rmsk exon 63955601 63956158 3682 + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0558"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr6 rmsk exon 63956159 63956522 2020 + . gene_id "HERVH_6q12c"; transcript_id "HERVH_6q12c"; locus "HERVH_6q12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0558"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q12a ### chr6 rmsk gene 64099147 64099807 . + . gene_id "ERVLE_6q12a"; transcript_id "ERVLE_6q12a"; locus "ERVLE_6q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1617"; model_cov "645"; model_pct "11.4"; chr6 rmsk exon 64099147 64099807 1125 + . gene_id "ERVLE_6q12a"; transcript_id "ERVLE_6q12a"; locus "ERVLE_6q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1617"; repClass "LTR"; repEnd "2891"; repFamily "ERVL"; repLeft "-2776"; repStart "2246"; ### HML5_6q12 ### chr6 rmsk gene 64299000 64304246 . + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0050"; model_cov "5277"; model_pct "77.2"; chr6 rmsk exon 64299000 64299466 2319 + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0050"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "31"; chr6 rmsk exon 64299467 64300215 4989 + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0050"; repClass "LTR"; repEnd "768"; repFamily "ERVK"; repLeft "-6069"; repStart "1"; chr6 rmsk exon 64300449 64303470 18601 + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0050"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2327"; chr6 rmsk exon 64303476 64303561 2396 + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0050"; repClass "LTR"; repEnd "106"; repFamily "ERVK"; repLeft "-420"; repStart "6"; chr6 rmsk exon 64303862 64304246 2396 + . gene_id "HML5_6q12"; transcript_id "HML5_6q12"; locus "HML5_6q12"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0050"; repClass "LTR"; repEnd "520"; repFamily "ERVK"; repLeft "-6"; repStart "107"; ### ERV316A3_6q12b ### chr6 rmsk gene 64828382 64831186 . + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1232"; model_cov "1607"; model_pct "30.8"; chr6 rmsk exon 64828382 64828666 611 + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1232"; repClass "LTR"; repEnd "2878"; repFamily "ERVL"; repLeft "-2348"; repStart "2581"; chr6 rmsk exon 64828820 64829418 546 + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1232"; repClass "LTR"; repEnd "3734"; repFamily "ERVL"; repLeft "-1492"; repStart "3095"; chr6 rmsk exon 64829450 64829923 710 + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1232"; repClass "LTR"; repEnd "4655"; repFamily "ERVL"; repLeft "-571"; repStart "4177"; chr6 rmsk exon 64830481 64830668 392 + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1232"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "4928"; chr6 rmsk exon 64830787 64831186 803 + . gene_id "ERV316A3_6q12b"; transcript_id "ERV316A3_6q12b"; locus "ERV316A3_6q12b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1232"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "-12"; ### ERVLE_6q12b ### chr6 rmsk gene 64894371 64895302 . + . gene_id "ERVLE_6q12b"; transcript_id "ERVLE_6q12b"; locus "ERVLE_6q12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1618"; model_cov "920"; model_pct "16.2"; chr6 rmsk exon 64894371 64894837 537 + . gene_id "ERVLE_6q12b"; transcript_id "ERVLE_6q12b"; locus "ERVLE_6q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1618"; repClass "LTR"; repEnd "2049"; repFamily "ERVL"; repLeft "-3618"; repStart "1559"; chr6 rmsk exon 64894883 64895302 648 + . gene_id "ERVLE_6q12b"; transcript_id "ERVLE_6q12b"; locus "ERVLE_6q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1618"; repClass "LTR"; repEnd "2474"; repFamily "ERVL"; repLeft "-3193"; repStart "2044"; ### HERVW_6q12 ### chr6 rmsk gene 65004992 65011967 . + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0133"; model_cov "6350"; model_pct "73.6"; chr6 rmsk exon 65004992 65005494 3800 + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0133"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr6 rmsk exon 65005495 65011330 40662 + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0133"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "-2604"; repStart "1"; chr6 rmsk exon 65011321 65011359 290 + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0133"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr6 rmsk exon 65011350 65011641 2290 + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0133"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr6 rmsk exon 65011642 65011967 2678 + . gene_id "HERVW_6q12"; transcript_id "HERVW_6q12"; locus "HERVW_6q12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0133"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLB4_6q12a ### chr6 rmsk gene 65273291 65278445 . + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0709"; model_cov "3447"; model_pct "60.3"; chr6 rmsk exon 65273291 65273376 9735 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "1924"; repFamily "ERVL"; repLeft "-3790"; repStart "1839"; chr6 rmsk exon 65273917 65274909 9735 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "-2762"; repStart "1925"; chr6 rmsk exon 65274936 65275592 9735 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "3639"; repFamily "ERVL"; repLeft "-2075"; repStart "2953"; chr6 rmsk exon 65275586 65275757 733 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "3953"; repFamily "ERVL"; repLeft "-1761"; repStart "3776"; chr6 rmsk exon 65275746 65275983 5704 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "4481"; repFamily "ERVL"; repLeft "-1233"; repStart "4246"; chr6 rmsk exon 65276015 65276990 5704 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "5503"; repFamily "ERVL"; repLeft "-211"; repStart "4482"; chr6 rmsk exon 65277673 65277880 1016 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5498"; chr6 rmsk exon 65277888 65277957 346 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "-470"; repStart "14"; chr6 rmsk exon 65277960 65278016 1060 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "269"; repFamily "ERVL"; repLeft "-287"; repStart "213"; chr6 rmsk exon 65278062 65278317 1060 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "-35"; repStart "271"; chr6 rmsk exon 65278392 65278445 390 + . gene_id "ERVLB4_6q12a"; transcript_id "ERVLB4_6q12a"; locus "ERVLB4_6q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0709"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "500"; ### ERVLB4_6q12b ### chr6 rmsk gene 65523829 65525451 . - . gene_id "ERVLB4_6q12b"; transcript_id "ERVLB4_6q12b"; locus "ERVLB4_6q12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0710"; model_cov "1221"; model_pct "21.4"; chr6 rmsk exon 65523829 65523879 5735 - . gene_id "ERVLB4_6q12b"; transcript_id "ERVLB4_6q12b"; locus "ERVLB4_6q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0710"; repClass "LTR"; repEnd "5075"; repFamily "ERVL"; repLeft "5036"; repStart "-639"; chr6 rmsk exon 65524172 65525055 5735 - . gene_id "ERVLB4_6q12b"; transcript_id "ERVLB4_6q12b"; locus "ERVLB4_6q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0710"; repClass "LTR"; repEnd "5035"; repFamily "ERVL"; repLeft "4112"; repStart "-679"; chr6 rmsk exon 65525158 65525451 5735 - . gene_id "ERVLB4_6q12b"; transcript_id "ERVLB4_6q12b"; locus "ERVLB4_6q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0710"; repClass "LTR"; repEnd "4111"; repFamily "ERVL"; repLeft "3852"; repStart "-1603"; ### ERVLE_6q12c ### chr6 rmsk gene 65526828 65527972 . + . gene_id "ERVLE_6q12c"; transcript_id "ERVLE_6q12c"; locus "ERVLE_6q12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1620"; model_cov "946"; model_pct "16.7"; chr6 rmsk exon 65526828 65527038 349 + . gene_id "ERVLE_6q12c"; transcript_id "ERVLE_6q12c"; locus "ERVLE_6q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1620"; repClass "LTR"; repEnd "3206"; repFamily "ERVL"; repLeft "-2461"; repStart "2981"; chr6 rmsk exon 65527257 65527461 338 + . gene_id "ERVLE_6q12c"; transcript_id "ERVLE_6q12c"; locus "ERVLE_6q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1620"; repClass "LTR"; repEnd "3726"; repFamily "ERVL"; repLeft "-1941"; repStart "3518"; chr6 rmsk exon 65527490 65527972 590 + . gene_id "ERVLE_6q12c"; transcript_id "ERVLE_6q12c"; locus "ERVLE_6q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1620"; repClass "LTR"; repEnd "4492"; repFamily "ERVL"; repLeft "-1175"; repStart "3979"; ### HERVH_6q12d ### chr6 rmsk gene 65672768 65673965 . - . gene_id "HERVH_6q12d"; transcript_id "HERVH_6q12d"; locus "HERVH_6q12d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0559"; model_cov "793"; model_pct "10.3"; chr6 rmsk exon 65672768 65673150 2265 - . gene_id "HERVH_6q12d"; transcript_id "HERVH_6q12d"; locus "HERVH_6q12d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0559"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 65673151 65673541 2387 - . gene_id "HERVH_6q12d"; transcript_id "HERVH_6q12d"; locus "HERVH_6q12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0559"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7323"; repStart "0"; chr6 rmsk exon 65673571 65673965 2705 - . gene_id "HERVH_6q12d"; transcript_id "HERVH_6q12d"; locus "HERVH_6q12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0559"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "4611"; repStart "-2699"; ### MER34B_6q12 ### chr6 rmsk gene 65939124 65941046 . + . gene_id "MER34B_6q12"; transcript_id "MER34B_6q12"; locus "MER34B_6q12"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0119"; model_cov "1868"; model_pct "34.9"; chr6 rmsk exon 65939124 65939225 355 + . gene_id "MER34B_6q12"; transcript_id "MER34B_6q12"; locus "MER34B_6q12"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0119"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-305"; repStart "135"; chr6 rmsk exon 65939289 65941046 3728 + . gene_id "MER34B_6q12"; transcript_id "MER34B_6q12"; locus "MER34B_6q12"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0119"; repClass "LTR"; repEnd "3007"; repFamily "ERV1"; repLeft "-2349"; repStart "1139"; ### HUERSP1_6q12a ### chr6 rmsk gene 66137454 66138912 . + . gene_id "HUERSP1_6q12a"; transcript_id "HUERSP1_6q12a"; locus "HUERSP1_6q12a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0079"; model_cov "723"; model_pct "11.5"; chr6 rmsk exon 66137454 66138161 4169 + . gene_id "HUERSP1_6q12a"; transcript_id "HUERSP1_6q12a"; locus "HUERSP1_6q12a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0079"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr6 rmsk exon 66138162 66138504 1937 + . gene_id "HUERSP1_6q12a"; transcript_id "HUERSP1_6q12a"; locus "HUERSP1_6q12a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0079"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-5917"; repStart "1"; chr6 rmsk exon 66138517 66138912 1833 + . gene_id "HUERSP1_6q12a"; transcript_id "HUERSP1_6q12a"; locus "HUERSP1_6q12a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0079"; repClass "LTR"; repEnd "819"; repFamily "ERV1"; repLeft "-5444"; repStart "441"; ### MER61_6q12 ### chr6 rmsk gene 66211477 66215054 . + . gene_id "MER61_6q12"; transcript_id "MER61_6q12"; locus "MER61_6q12"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0173"; model_cov "3245"; model_pct "62.2"; chr6 rmsk exon 66211477 66214702 20107 + . gene_id "MER61_6q12"; transcript_id "MER61_6q12"; locus "MER61_6q12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0173"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1972"; chr6 rmsk exon 66214703 66215054 2352 + . gene_id "MER61_6q12"; transcript_id "MER61_6q12"; locus "MER61_6q12"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0173"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HERVIP10FH_6q12 ### chr6 rmsk gene 66258645 66264857 . + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0065"; model_cov "5037"; model_pct "98.7"; chr6 rmsk exon 66258645 66259182 3214 + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0065"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 66259183 66259467 1693 + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0065"; repClass "LTR"; repEnd "-2203"; repFamily "ERV1"; repLeft "-7305"; repStart "-2500"; chr6 rmsk exon 66259556 66259671 410 + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0065"; repClass "LTR"; repEnd "-2045"; repFamily "ERV1"; repLeft "-7147"; repStart "-2162"; chr6 rmsk exon 66259731 66264357 34722 + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0065"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "479"; chr6 rmsk exon 66264358 66264857 3278 + . gene_id "HERVIP10FH_6q12"; transcript_id "HERVIP10FH_6q12"; locus "HERVIP10FH_6q12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0065"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_6q12c ### chr6 rmsk gene 66289303 66291088 . - . gene_id "ERVLB4_6q12c"; transcript_id "ERVLB4_6q12c"; locus "ERVLB4_6q12c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0711"; model_cov "1036"; model_pct "18.1"; chr6 rmsk exon 66289303 66289585 450 - . gene_id "ERVLB4_6q12c"; transcript_id "ERVLB4_6q12c"; locus "ERVLB4_6q12c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0711"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "145"; repStart "-2"; chr6 rmsk exon 66289588 66289991 1727 - . gene_id "ERVLB4_6q12c"; transcript_id "ERVLB4_6q12c"; locus "ERVLB4_6q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0711"; repClass "LTR"; repEnd "1802"; repFamily "ERVL"; repLeft "1380"; repStart "-3912"; chr6 rmsk exon 66290011 66290611 2834 - . gene_id "ERVLB4_6q12c"; transcript_id "ERVLB4_6q12c"; locus "ERVLB4_6q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0711"; repClass "LTR"; repEnd "618"; repFamily "ERVL"; repLeft "4"; repStart "-5096"; chr6 rmsk exon 66290612 66291088 1690 - . gene_id "ERVLB4_6q12c"; transcript_id "ERVLB4_6q12c"; locus "ERVLB4_6q12c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0711"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "22"; repStart "-45"; ### ERV316A3_6q12c ### chr6 rmsk gene 66348717 66350527 . + . gene_id "ERV316A3_6q12c"; transcript_id "ERV316A3_6q12c"; locus "ERV316A3_6q12c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1235"; model_cov "1226"; model_pct "23.5"; chr6 rmsk exon 66348717 66348827 1881 + . gene_id "ERV316A3_6q12c"; transcript_id "ERV316A3_6q12c"; locus "ERV316A3_6q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1235"; repClass "LTR"; repEnd "3317"; repFamily "ERVL"; repLeft "-1909"; repStart "3217"; chr6 rmsk exon 66349156 66349656 1881 + . gene_id "ERV316A3_6q12c"; transcript_id "ERV316A3_6q12c"; locus "ERV316A3_6q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1235"; repClass "LTR"; repEnd "3840"; repFamily "ERVL"; repLeft "-1386"; repStart "3318"; chr6 rmsk exon 66349956 66350527 1881 + . gene_id "ERV316A3_6q12c"; transcript_id "ERV316A3_6q12c"; locus "ERV316A3_6q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1235"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-781"; repStart "3841"; ### HERVL18_6q12a ### chr6 rmsk gene 66478698 66481659 . - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0069"; model_cov "2234"; model_pct "36.9"; chr6 rmsk exon 66478698 66479063 1998 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 66479305 66479399 754 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr6 rmsk exon 66479398 66480047 3828 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "2952"; repStart "-2467"; chr6 rmsk exon 66480044 66480413 2126 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "2720"; repStart "-2959"; chr6 rmsk exon 66480413 66480672 1202 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr6 rmsk exon 66480672 66480706 260 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1776"; repStart "-4237"; chr6 rmsk exon 66480720 66480896 973 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "1541"; repFamily "ERVL"; repLeft "1368"; repStart "-4506"; chr6 rmsk exon 66480907 66481016 470 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "1257"; repFamily "ERVL"; repLeft "1149"; repStart "-4790"; chr6 rmsk exon 66481011 66481517 2609 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "2"; repStart "-5549"; chr6 rmsk exon 66481537 66481659 664 - . gene_id "HERVL18_6q12a"; transcript_id "HERVL18_6q12a"; locus "HERVL18_6q12a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0069"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "237"; repStart "0"; ### HUERSP3B_6q12 ### chr6 rmsk gene 66561896 66569647 . - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0067"; model_cov "6505"; model_pct "87.7"; chr6 rmsk exon 66561896 66562464 2766 - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0067"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "11"; repStart "-1"; chr6 rmsk exon 66562470 66566782 25002 - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0067"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "3073"; repStart "-1"; chr6 rmsk exon 66566883 66568948 9475 - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0067"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "264"; repStart "-5089"; chr6 rmsk exon 66568951 66569045 625 - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0067"; repClass "LTR"; repEnd "-1390"; repFamily "ERV1"; repLeft "-1486"; repStart "-8808"; chr6 rmsk exon 66569060 66569647 2311 - . gene_id "HUERSP3B_6q12"; transcript_id "HUERSP3B_6q12"; locus "HUERSP3B_6q12"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0067"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_6q12b ### chr6 rmsk gene 66605123 66607729 . - . gene_id "HERVL_6q12b"; transcript_id "HERVL_6q12b"; locus "HERVL_6q12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0598"; model_cov "1685"; model_pct "29.8"; chr6 rmsk exon 66605123 66605561 1168 - . gene_id "HERVL_6q12b"; transcript_id "HERVL_6q12b"; locus "HERVL_6q12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0598"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "13"; repStart "0"; chr6 rmsk exon 66605562 66607175 9106 - . gene_id "HERVL_6q12b"; transcript_id "HERVL_6q12b"; locus "HERVL_6q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0598"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "3053"; repStart "-916"; chr6 rmsk exon 66607186 66607729 1933 - . gene_id "HERVL_6q12b"; transcript_id "HERVL_6q12b"; locus "HERVL_6q12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0598"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-98"; repStart "-2"; ### MER101_6q12 ### chr6 rmsk gene 66612093 66618076 . - . gene_id "MER101_6q12"; transcript_id "MER101_6q12"; locus "MER101_6q12"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0181"; model_cov "5550"; model_pct "83.6"; chr6 rmsk exon 66612093 66612519 1618 - . gene_id "MER101_6q12"; transcript_id "MER101_6q12"; locus "MER101_6q12"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0181"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 66612521 66613118 5861 - . gene_id "MER101_6q12"; transcript_id "MER101_6q12"; locus "MER101_6q12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0181"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6010"; repStart "0"; chr6 rmsk exon 66613411 66614034 5861 - . gene_id "MER101_6q12"; transcript_id "MER101_6q12"; locus "MER101_6q12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0181"; repClass "LTR"; repEnd "6009"; repFamily "ERV1"; repLeft "5382"; repStart "-630"; chr6 rmsk exon 66614030 66618076 16461 - . gene_id "MER101_6q12"; transcript_id "MER101_6q12"; locus "MER101_6q12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0181"; repClass "LTR"; repEnd "4729"; repFamily "ERV1"; repLeft "435"; repStart "-1910"; ### ERVLE_6q12d ### chr6 rmsk gene 66717994 66718803 . + . gene_id "ERVLE_6q12d"; transcript_id "ERVLE_6q12d"; locus "ERVLE_6q12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1622"; model_cov "809"; model_pct "14.3"; chr6 rmsk exon 66717994 66718803 846 + . gene_id "ERVLE_6q12d"; transcript_id "ERVLE_6q12d"; locus "ERVLE_6q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1622"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "-373"; repStart "4485"; ### ERV316A3_6q12d ### chr6 rmsk gene 66725879 66727132 . + . gene_id "ERV316A3_6q12d"; transcript_id "ERV316A3_6q12d"; locus "ERV316A3_6q12d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1236"; model_cov "1058"; model_pct "20.2"; chr6 rmsk exon 66725879 66726155 799 + . gene_id "ERV316A3_6q12d"; transcript_id "ERV316A3_6q12d"; locus "ERV316A3_6q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1236"; repClass "LTR"; repEnd "4148"; repFamily "ERVL"; repLeft "-1078"; repStart "3865"; chr6 rmsk exon 66726227 66726544 385 + . gene_id "ERV316A3_6q12d"; transcript_id "ERV316A3_6q12d"; locus "ERV316A3_6q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1236"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "-746"; repStart "4156"; chr6 rmsk exon 66726701 66727132 1258 + . gene_id "ERV316A3_6q12d"; transcript_id "ERV316A3_6q12d"; locus "ERV316A3_6q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1236"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "-266"; repStart "4509"; ### HUERSP3_6q12a ### chr6 rmsk gene 66923478 66927105 . - . gene_id "HUERSP3_6q12a"; transcript_id "HUERSP3_6q12a"; locus "HUERSP3_6q12a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0081"; model_cov "3570"; model_pct "40.0"; chr6 rmsk exon 66923478 66926922 16206 - . gene_id "HUERSP3_6q12a"; transcript_id "HUERSP3_6q12a"; locus "HUERSP3_6q12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0081"; repClass "LTR"; repEnd "3571"; repFamily "ERV1"; repLeft "1"; repStart "-5348"; chr6 rmsk exon 66926923 66927105 648 - . gene_id "HUERSP3_6q12a"; transcript_id "HUERSP3_6q12a"; locus "HUERSP3_6q12a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0081"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "461"; repStart "0"; ### HUERSP3_6q12b ### chr6 rmsk gene 66927106 66929752 . + . gene_id "HUERSP3_6q12b"; transcript_id "HUERSP3_6q12b"; locus "HUERSP3_6q12b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0082"; model_cov "1895"; model_pct "21.2"; chr6 rmsk exon 66927106 66927814 3897 + . gene_id "HUERSP3_6q12b"; transcript_id "HUERSP3_6q12b"; locus "HUERSP3_6q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0082"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "-2283"; repStart "5917"; chr6 rmsk exon 66927801 66928509 4618 + . gene_id "HUERSP3_6q12b"; transcript_id "HUERSP3_6q12b"; locus "HUERSP3_6q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0082"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "7736"; chr6 rmsk exon 66928651 66929121 3138 + . gene_id "HUERSP3_6q12b"; transcript_id "HUERSP3_6q12b"; locus "HUERSP3_6q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0082"; repClass "LTR"; repEnd "8898"; repFamily "ERV1"; repLeft "-21"; repStart "8435"; chr6 rmsk exon 66929142 66929752 2964 + . gene_id "HUERSP3_6q12b"; transcript_id "HUERSP3_6q12b"; locus "HUERSP3_6q12b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0082"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q12e ### chr6 rmsk gene 66962025 66963672 . + . gene_id "ERVLE_6q12e"; transcript_id "ERVLE_6q12e"; locus "ERVLE_6q12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1624"; model_cov "1020"; model_pct "18.0"; chr6 rmsk exon 66962025 66962496 669 + . gene_id "ERVLE_6q12e"; transcript_id "ERVLE_6q12e"; locus "ERVLE_6q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1624"; repClass "LTR"; repEnd "3718"; repFamily "ERVL"; repLeft "-1949"; repStart "3213"; chr6 rmsk exon 66962602 66962840 391 + . gene_id "ERVLE_6q12e"; transcript_id "ERVLE_6q12e"; locus "ERVLE_6q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1624"; repClass "LTR"; repEnd "4533"; repFamily "ERVL"; repLeft "-1134"; repStart "4266"; chr6 rmsk exon 66963429 66963672 493 + . gene_id "ERVLE_6q12e"; transcript_id "ERVLE_6q12e"; locus "ERVLE_6q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1624"; repClass "LTR"; repEnd "5024"; repFamily "ERVL"; repLeft "-643"; repStart "4776"; ### ERV316A3_6q12e ### chr6 rmsk gene 67046998 67049342 . - . gene_id "ERV316A3_6q12e"; transcript_id "ERV316A3_6q12e"; locus "ERV316A3_6q12e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1238"; model_cov "2149"; model_pct "41.1"; chr6 rmsk exon 67046998 67047606 1003 - . gene_id "ERV316A3_6q12e"; transcript_id "ERV316A3_6q12e"; locus "ERV316A3_6q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1238"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "3454"; repStart "-1008"; chr6 rmsk exon 67047690 67048985 1465 - . gene_id "ERV316A3_6q12e"; transcript_id "ERV316A3_6q12e"; locus "ERV316A3_6q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1238"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "2443"; repStart "-1461"; chr6 rmsk exon 67049278 67049342 373 - . gene_id "ERV316A3_6q12e"; transcript_id "ERV316A3_6q12e"; locus "ERV316A3_6q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1238"; repClass "LTR"; repEnd "2432"; repFamily "ERVL"; repLeft "2369"; repStart "-2794"; ### ERVLE_6q12f ### chr6 rmsk gene 67210631 67213729 . - . gene_id "ERVLE_6q12f"; transcript_id "ERVLE_6q12f"; locus "ERVLE_6q12f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1626"; model_cov "1945"; model_pct "34.3"; chr6 rmsk exon 67210631 67211561 961 - . gene_id "ERVLE_6q12f"; transcript_id "ERVLE_6q12f"; locus "ERVLE_6q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1626"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "4093"; repStart "-627"; chr6 rmsk exon 67211591 67211972 304 - . gene_id "ERVLE_6q12f"; transcript_id "ERVLE_6q12f"; locus "ERVLE_6q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1626"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "3941"; repStart "-1317"; chr6 rmsk exon 67212941 67213331 614 - . gene_id "ERVLE_6q12f"; transcript_id "ERVLE_6q12f"; locus "ERVLE_6q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1626"; repClass "LTR"; repEnd "3602"; repFamily "ERVL"; repLeft "3214"; repStart "-2065"; chr6 rmsk exon 67213529 67213729 284 - . gene_id "ERVLE_6q12f"; transcript_id "ERVLE_6q12f"; locus "ERVLE_6q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1626"; repClass "LTR"; repEnd "2449"; repFamily "ERVL"; repLeft "2248"; repStart "-3218"; ### ERVLE_6q12g ### chr6 rmsk gene 67282535 67285152 . - . gene_id "ERVLE_6q12g"; transcript_id "ERVLE_6q12g"; locus "ERVLE_6q12g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1627"; model_cov "866"; model_pct "15.3"; chr6 rmsk exon 67282535 67282847 409 - . gene_id "ERVLE_6q12g"; transcript_id "ERVLE_6q12g"; locus "ERVLE_6q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1627"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5324"; repStart "0"; chr6 rmsk exon 67282984 67283037 253 - . gene_id "ERVLE_6q12g"; transcript_id "ERVLE_6q12g"; locus "ERVLE_6q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1627"; repClass "LTR"; repEnd "5186"; repFamily "ERVL"; repLeft "5133"; repStart "-481"; chr6 rmsk exon 67284587 67284951 812 - . gene_id "ERVLE_6q12g"; transcript_id "ERVLE_6q12g"; locus "ERVLE_6q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1627"; repClass "LTR"; repEnd "4570"; repFamily "ERVL"; repLeft "4199"; repStart "-1097"; chr6 rmsk exon 67285065 67285152 252 - . gene_id "ERVLE_6q12g"; transcript_id "ERVLE_6q12g"; locus "ERVLE_6q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1627"; repClass "LTR"; repEnd "4046"; repFamily "ERVL"; repLeft "3947"; repStart "-1621"; ### HERVL18_6q12b ### chr6 rmsk gene 67346018 67349044 . + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0071"; model_cov "2127"; model_pct "35.2"; chr6 rmsk exon 67346018 67346379 2276 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 67346394 67346851 2234 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-5597"; repStart "9"; chr6 rmsk exon 67346891 67347299 2037 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "1622"; repFamily "ERVL"; repLeft "-4425"; repStart "1211"; chr6 rmsk exon 67347325 67347579 1098 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "2439"; repFamily "ERVL"; repLeft "-3608"; repStart "2119"; chr6 rmsk exon 67347589 67348429 4888 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2718"; chr6 rmsk exon 67348432 67348525 560 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr6 rmsk exon 67348652 67349044 2024 + . gene_id "HERVL18_6q12b"; transcript_id "HERVL18_6q12b"; locus "HERVL18_6q12b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0071"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP1_6q12b ### chr6 rmsk gene 67405178 67412893 . + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0080"; model_cov "6496"; model_pct "100.0"; chr6 rmsk exon 67405178 67405337 1011 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-6"; repStart "526"; chr6 rmsk exon 67405344 67407355 21836 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "-4220"; repStart "1"; chr6 rmsk exon 67407815 67407869 21836 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "2104"; repFamily "ERV1"; repLeft "-4159"; repStart "2044"; chr6 rmsk exon 67407920 67408728 21836 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3311"; repStart "2105"; chr6 rmsk exon 67408773 67410050 21836 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "4219"; repFamily "ERV1"; repLeft "-2044"; repStart "2953"; chr6 rmsk exon 67410372 67412173 21836 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "3982"; chr6 rmsk exon 67412174 67412893 2591 + . gene_id "HUERSP1_6q12b"; transcript_id "HUERSP1_6q12b"; locus "HUERSP1_6q12b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0080"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_6q12 ### chr6 rmsk gene 67528883 67533320 . - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0059"; model_cov "2940"; model_pct "95.2"; chr6 rmsk exon 67528883 67529678 4790 - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0059"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 67529679 67531969 15522 - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0059"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "787"; repStart "0"; chr6 rmsk exon 67532571 67533152 15522 - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0059"; repClass "LTR"; repEnd "786"; repFamily "ERV1"; repLeft "220"; repStart "-2302"; chr6 rmsk exon 67533182 67533259 291 - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0059"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "52"; repStart "-2963"; chr6 rmsk exon 67533260 67533320 344 - . gene_id "HUERSP2_6q12"; transcript_id "HUERSP2_6q12"; locus "HUERSP2_6q12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0059"; repClass "LTR"; repEnd "61"; repFamily "ERV1"; repLeft "1"; repStart "-738"; ### MER41_6q12 ### chr6 rmsk gene 67669775 67674993 . - . gene_id "MER41_6q12"; transcript_id "MER41_6q12"; locus "MER41_6q12"; category "internal"; intModel "MER41-int"; locid "MER41-int_0214"; model_cov "6816"; model_pct "100.0"; chr6 rmsk exon 67669775 67672010 12637 - . gene_id "MER41_6q12"; transcript_id "MER41_6q12"; locus "MER41_6q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0214"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "2480"; repStart "-4"; chr6 rmsk exon 67672320 67673780 12637 - . gene_id "MER41_6q12"; transcript_id "MER41_6q12"; locus "MER41_6q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0214"; repClass "LTR"; repEnd "3842"; repFamily "ERV1"; repLeft "1373"; repStart "-2104"; chr6 rmsk exon 67673778 67674860 3320 - . gene_id "MER41_6q12"; transcript_id "MER41_6q12"; locus "MER41_6q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0214"; repClass "LTR"; repEnd "5557"; repFamily "ERV1"; repLeft "4720"; repStart "-389"; chr6 rmsk exon 67674937 67674993 2476 - . gene_id "MER41_6q12"; transcript_id "MER41_6q12"; locus "MER41_6q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0214"; repClass "LTR"; repEnd "-402"; repFamily "ERV1"; repLeft "-450"; repStart "-6348"; ### MER4B_6q12a ### chr6 rmsk gene 67683368 67684515 . - . gene_id "MER4B_6q12a"; transcript_id "MER4B_6q12a"; locus "MER4B_6q12a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0187"; model_cov "1274"; model_pct "18.9"; chr6 rmsk exon 67683368 67684515 3365 - . gene_id "MER4B_6q12a"; transcript_id "MER4B_6q12a"; locus "MER4B_6q12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0187"; repClass "LTR"; repEnd "3255"; repFamily "ERV1"; repLeft "1981"; repStart "-3503"; ### MER4B_6q12b ### chr6 rmsk gene 67684527 67691660 . + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0188"; model_cov "4342"; model_pct "64.2"; chr6 rmsk exon 67684527 67684732 2237 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "1721"; repFamily "ERV1"; repLeft "-5037"; repStart "1517"; chr6 rmsk exon 67684862 67685053 2237 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "1907"; repFamily "ERV1"; repLeft "-4851"; repStart "1722"; chr6 rmsk exon 67686076 67686460 1346 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "2208"; repFamily "ERV1"; repLeft "-4550"; repStart "1908"; chr6 rmsk exon 67686640 67687700 5567 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "3294"; repFamily "ERV1"; repLeft "-3464"; repStart "2236"; chr6 rmsk exon 67688158 67688428 1608 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "-3185"; repStart "3303"; chr6 rmsk exon 67688813 67691097 13177 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "4433"; chr6 rmsk exon 67691098 67691660 2748 + . gene_id "MER4B_6q12b"; transcript_id "MER4B_6q12b"; locus "MER4B_6q12b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0188"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "1"; ### ERVLB4_6q12d ### chr6 rmsk gene 67745373 67749048 . + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0714"; model_cov "1273"; model_pct "22.3"; chr6 rmsk exon 67745373 67745421 311 + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0714"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-2"; repStart "367"; chr6 rmsk exon 67745422 67745495 429 + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0714"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-5640"; repStart "1"; chr6 rmsk exon 67747547 67747681 699 + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0714"; repClass "LTR"; repEnd "235"; repFamily "ERVL"; repLeft "-5479"; repStart "99"; chr6 rmsk exon 67747668 67748691 4629 + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0714"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4650"; chr6 rmsk exon 67748692 67749048 1386 + . gene_id "ERVLB4_6q12d"; transcript_id "ERVLB4_6q12d"; locus "ERVLB4_6q12d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0714"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### MER4_6q12a ### chr6 rmsk gene 67857075 67861138 . - . gene_id "MER4_6q12a"; transcript_id "MER4_6q12a"; locus "MER4_6q12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0326"; model_cov "4658"; model_pct "70.6"; chr6 rmsk exon 67857075 67857214 792 - . gene_id "MER4_6q12a"; transcript_id "MER4_6q12a"; locus "MER4_6q12a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0326"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "258"; repStart "-40"; chr6 rmsk exon 67857216 67859300 8330 - . gene_id "MER4_6q12a"; transcript_id "MER4_6q12a"; locus "MER4_6q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0326"; repClass "LTR"; repEnd "5114"; repFamily "ERV1"; repLeft "1959"; repStart "-1484"; chr6 rmsk exon 67859616 67861138 4335 - . gene_id "MER4_6q12a"; transcript_id "MER4_6q12a"; locus "MER4_6q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0326"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "982"; repStart "-4113"; ### MER4_6q12b ### chr6 rmsk gene 67861436 67862981 . - . gene_id "MER4_6q12b"; transcript_id "MER4_6q12b"; locus "MER4_6q12b"; category "insert*"; intModel "MER4-int"; locid "MER4-int_0328"; model_cov "1251"; model_pct "19.0"; chr6 rmsk exon 67861436 67861455 963 - . gene_id "MER4_6q12b"; transcript_id "MER4_6q12b"; locus "MER4_6q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0328"; repClass "LTR"; repEnd "2692"; repFamily "ERV1"; repLeft "2665"; repStart "-3906"; chr6 rmsk exon 67861498 67861880 3073 - . gene_id "MER4_6q12b"; transcript_id "MER4_6q12b"; locus "MER4_6q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0328"; repClass "LTR"; repEnd "2664"; repFamily "ERV1"; repLeft "1907"; repStart "-3934"; chr6 rmsk exon 67861916 67862544 3073 - . gene_id "MER4_6q12b"; transcript_id "MER4_6q12b"; locus "MER4_6q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0328"; repClass "LTR"; repEnd "2664"; repFamily "ERV1"; repLeft "1413"; repStart "-3934"; chr6 rmsk exon 67862548 67862981 2775 - . gene_id "MER4_6q12b"; transcript_id "MER4_6q12b"; locus "MER4_6q12b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0328"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6q12e ### chr6 rmsk gene 67867628 67874456 . - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0560"; model_cov "6246"; model_pct "81.0"; chr6 rmsk exon 67867628 67868062 2409 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 67868063 67868609 3394 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr6 rmsk exon 67868606 67868742 847 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "7289"; repFamily "ERV1"; repLeft "7157"; repStart "-424"; chr6 rmsk exon 67868736 67869153 2266 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr6 rmsk exon 67869145 67874008 16706 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr6 rmsk exon 67874009 67874456 2284 - . gene_id "HERVH_6q12e"; transcript_id "HERVH_6q12e"; locus "HERVH_6q12e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0560"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6q12f ### chr6 rmsk gene 67880996 67889473 . - . gene_id "HERVH_6q12f"; transcript_id "HERVH_6q12f"; locus "HERVH_6q12f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0561"; model_cov "7261"; model_pct "94.1"; chr6 rmsk exon 67880996 67881436 1594 - . gene_id "HERVH_6q12f"; transcript_id "HERVH_6q12f"; locus "HERVH_6q12f"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0561"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "-6"; chr6 rmsk exon 67881437 67888662 13473 - . gene_id "HERVH_6q12f"; transcript_id "HERVH_6q12f"; locus "HERVH_6q12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0561"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "596"; repStart "0"; chr6 rmsk exon 67888748 67888887 279 - . gene_id "HERVH_6q12f"; transcript_id "HERVH_6q12f"; locus "HERVH_6q12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0561"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "233"; repStart "-7336"; chr6 rmsk exon 67889062 67889473 1477 - . gene_id "HERVH_6q12f"; transcript_id "HERVH_6q12f"; locus "HERVH_6q12f"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0561"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "25"; repStart "0"; ### ERV316A3_6q12f ### chr6 rmsk gene 67976063 67981751 . - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1239"; model_cov "4528"; model_pct "86.6"; chr6 rmsk exon 67976063 67976174 390 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "336"; repStart "-12"; chr6 rmsk exon 67976253 67976398 410 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "5026"; repStart "-45"; chr6 rmsk exon 67976754 67977883 1906 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "3637"; repStart "-413"; chr6 rmsk exon 67977926 67978035 1316 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "3636"; repFamily "ERVL"; repLeft "3528"; repStart "-1590"; chr6 rmsk exon 67978222 67978289 314 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "3537"; repFamily "ERVL"; repLeft "3470"; repStart "-1689"; chr6 rmsk exon 67978376 67981449 6013 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "17"; repStart "-2187"; chr6 rmsk exon 67981450 67981751 1749 - . gene_id "ERV316A3_6q12f"; transcript_id "ERV316A3_6q12f"; locus "ERV316A3_6q12f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1239"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "154"; repStart "0"; ### ERV316A3_6q12g ### chr6 rmsk gene 67993156 67998715 . + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1240"; model_cov "3282"; model_pct "62.8"; chr6 rmsk exon 67993156 67993597 1014 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr6 rmsk exon 67993757 67993980 745 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-4571"; repStart "422"; chr6 rmsk exon 67994384 67994835 960 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "1384"; repFamily "ERVL"; repLeft "-3842"; repStart "933"; chr6 rmsk exon 67994910 67996184 2101 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "2656"; repFamily "ERVL"; repLeft "-2570"; repStart "1378"; chr6 rmsk exon 67996581 67996772 2101 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "2845"; repFamily "ERVL"; repLeft "-2381"; repStart "2657"; chr6 rmsk exon 67997042 67997355 766 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1436"; repStart "3410"; chr6 rmsk exon 67997395 67998127 1960 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "4466"; chr6 rmsk exon 67998309 67998715 1262 + . gene_id "ERV316A3_6q12g"; transcript_id "ERV316A3_6q12g"; locus "ERV316A3_6q12g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1240"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-14"; repStart "26"; ### HERVL_6q12c ### chr6 rmsk gene 68133929 68141347 . - . gene_id "HERVL_6q12c"; transcript_id "HERVL_6q12c"; locus "HERVL_6q12c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0599"; model_cov "5653"; model_pct "100.0"; chr6 rmsk exon 68133929 68134509 1967 - . gene_id "HERVL_6q12c"; transcript_id "HERVL_6q12c"; locus "HERVL_6q12c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0599"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 68134510 68140135 33856 - . gene_id "HERVL_6q12c"; transcript_id "HERVL_6q12c"; locus "HERVL_6q12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0599"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 68140136 68140195 1585 - . gene_id "HERVL_6q12c"; transcript_id "HERVL_6q12c"; locus "HERVL_6q12c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0599"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "508"; repStart "0"; chr6 rmsk exon 68140820 68141347 1585 - . gene_id "HERVL_6q12c"; transcript_id "HERVL_6q12c"; locus "HERVL_6q12c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0599"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "1"; repStart "-47"; ### HERVL_6q12d ### chr6 rmsk gene 68353208 68355649 . - . gene_id "HERVL_6q12d"; transcript_id "HERVL_6q12d"; locus "HERVL_6q12d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0600"; model_cov "2049"; model_pct "36.2"; chr6 rmsk exon 68353208 68353643 3377 - . gene_id "HERVL_6q12d"; transcript_id "HERVL_6q12d"; locus "HERVL_6q12d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0600"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 68353644 68354502 6614 - . gene_id "HERVL_6q12d"; transcript_id "HERVL_6q12d"; locus "HERVL_6q12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0600"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4781"; repStart "0"; chr6 rmsk exon 68354495 68355649 8491 - . gene_id "HERVL_6q12d"; transcript_id "HERVL_6q12d"; locus "HERVL_6q12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0600"; repClass "LTR"; repEnd "2316"; repFamily "ERVL"; repLeft "1140"; repStart "-3338"; ### HERVL_6q12e ### chr6 rmsk gene 68603038 68609733 . + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0601"; model_cov "5437"; model_pct "96.2"; chr6 rmsk exon 68603038 68603377 2082 + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0601"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-55"; repStart "70"; chr6 rmsk exon 68603524 68604412 6855 + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0601"; repClass "LTR"; repEnd "881"; repFamily "ERVL"; repLeft "-4773"; repStart "1"; chr6 rmsk exon 68604416 68604787 33788 + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0601"; repClass "LTR"; repEnd "1458"; repFamily "ERVL"; repLeft "-4196"; repStart "1094"; chr6 rmsk exon 68605112 68609285 33788 + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0601"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "1459"; chr6 rmsk exon 68609292 68609733 2865 + . gene_id "HERVL_6q12e"; transcript_id "HERVL_6q12e"; locus "HERVL_6q12e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0601"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6q12h ### chr6 rmsk gene 68900322 68901031 . + . gene_id "ERVLE_6q12h"; transcript_id "ERVLE_6q12h"; locus "ERVLE_6q12h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1629"; model_cov "752"; model_pct "13.3"; chr6 rmsk exon 68900322 68901031 3013 + . gene_id "ERVLE_6q12h"; transcript_id "ERVLE_6q12h"; locus "ERVLE_6q12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1629"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "-1169"; repStart "3746"; ### HERVL_6q13a ### chr6 rmsk gene 69205969 69210558 . - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0602"; model_cov "3690"; model_pct "65.3"; chr6 rmsk exon 69205969 69206045 3220 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chr6 rmsk exon 69206079 69206462 3220 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "2"; repStart "-59"; chr6 rmsk exon 69206463 69207316 4624 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4740"; repStart "0"; chr6 rmsk exon 69207296 69207555 1995 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "3087"; repFamily "ERVL"; repLeft "2829"; repStart "-2567"; chr6 rmsk exon 69207555 69209762 17427 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "2506"; repStart "-916"; chr6 rmsk exon 69209763 69210053 2180 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "287"; repFamily "ERVL"; repLeft "1"; repStart "-5367"; chr6 rmsk exon 69210054 69210123 3153 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr6 rmsk exon 69210171 69210558 3153 - . gene_id "HERVL_6q13a"; transcript_id "HERVL_6q13a"; locus "HERVL_6q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0602"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### HERVL32_6q13 ### chr6 rmsk gene 69615594 69617910 . - . gene_id "HERVL32_6q13"; transcript_id "HERVL32_6q13"; locus "HERVL32_6q13"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0025"; model_cov "1463"; model_pct "42.8"; chr6 rmsk exon 69615594 69616647 4780 - . gene_id "HERVL32_6q13"; transcript_id "HERVL32_6q13"; locus "HERVL32_6q13"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0025"; repClass "LTR"; repEnd "2914"; repFamily "ERVL"; repLeft "1904"; repStart "-504"; chr6 rmsk exon 69617431 69617910 4780 - . gene_id "HERVL32_6q13"; transcript_id "HERVL32_6q13"; locus "HERVL32_6q13"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0025"; repClass "LTR"; repEnd "1903"; repFamily "ERVL"; repLeft "1450"; repStart "-1515"; ### MER61_6q13a ### chr6 rmsk gene 69887651 69888518 . - . gene_id "MER61_6q13a"; transcript_id "MER61_6q13a"; locus "MER61_6q13a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0174"; model_cov "589"; model_pct "11.3"; chr6 rmsk exon 69887651 69887976 1821 - . gene_id "MER61_6q13a"; transcript_id "MER61_6q13a"; locus "MER61_6q13a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0174"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 69887977 69888518 2475 - . gene_id "MER61_6q13a"; transcript_id "MER61_6q13a"; locus "MER61_6q13a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0174"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4628"; repStart "0"; ### MER61_6q13b ### chr6 rmsk gene 69890795 69895721 . - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0175"; model_cov "3993"; model_pct "76.5"; chr6 rmsk exon 69890795 69890862 345 - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0175"; repClass "LTR"; repEnd "66"; repFamily "ERV1"; repLeft "1"; repStart "-275"; chr6 rmsk exon 69890863 69893451 18602 - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0175"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2596"; repStart "0"; chr6 rmsk exon 69894198 69894673 2604 - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0175"; repClass "LTR"; repEnd "1906"; repFamily "ERV1"; repLeft "1320"; repStart "-3311"; chr6 rmsk exon 69894659 69895395 2949 - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0175"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "1"; repStart "-4430"; chr6 rmsk exon 69895396 69895721 1796 - . gene_id "MER61_6q13b"; transcript_id "MER61_6q13b"; locus "MER61_6q13b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0175"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HERVL18_6q13 ### chr6 rmsk gene 69902518 69905731 . - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0072"; model_cov "2735"; model_pct "45.2"; chr6 rmsk exon 69902518 69902987 2882 - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0072"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "4394"; repStart "-1188"; chr6 rmsk exon 69902993 69903867 2777 - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0072"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "2720"; repStart "-2471"; chr6 rmsk exon 69903839 69904028 580 - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0072"; repClass "LTR"; repEnd "2482"; repFamily "ERVL"; repLeft "2228"; repStart "-3565"; chr6 rmsk exon 69904015 69905155 6176 - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0072"; repClass "LTR"; repEnd "1161"; repFamily "ERVL"; repLeft "1"; repStart "-4886"; chr6 rmsk exon 69905193 69905731 2646 - . gene_id "HERVL18_6q13"; transcript_id "HERVL18_6q13"; locus "HERVL18_6q13"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0072"; repClass "LTR"; repEnd "606"; repFamily "ERVL"; repLeft "1"; repStart "-8"; ### HML3_6q13 ### chr6 rmsk gene 70445359 70449051 . - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0108"; model_cov "2631"; model_pct "43.7"; chr6 rmsk exon 70445359 70445869 3996 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "505"; repFamily "ERVK"; repLeft "1"; repStart "-8"; chr6 rmsk exon 70445870 70446834 7569 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5054"; repStart "0"; chr6 rmsk exon 70446811 70447976 9666 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "2308"; repFamily "ERVK"; repLeft "1125"; repStart "-3713"; chr6 rmsk exon 70447978 70448045 590 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "513"; repStart "-5441"; chr6 rmsk exon 70448143 70448550 3073 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "415"; repFamily "ERVK"; repLeft "1"; repStart "-5606"; chr6 rmsk exon 70448551 70449051 3959 - . gene_id "HML3_6q13"; transcript_id "HML3_6q13"; locus "HML3_6q13"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0108"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6q13a ### chr6 rmsk gene 70563934 70566553 . - . gene_id "ERVLE_6q13a"; transcript_id "ERVLE_6q13a"; locus "ERVLE_6q13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1631"; model_cov "1655"; model_pct "29.2"; chr6 rmsk exon 70563934 70564658 938 - . gene_id "ERVLE_6q13a"; transcript_id "ERVLE_6q13a"; locus "ERVLE_6q13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1631"; repClass "LTR"; repEnd "4773"; repFamily "ERVL"; repLeft "3935"; repStart "-894"; chr6 rmsk exon 70565584 70565868 388 - . gene_id "ERVLE_6q13a"; transcript_id "ERVLE_6q13a"; locus "ERVLE_6q13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1631"; repClass "LTR"; repEnd "3783"; repFamily "ERVL"; repLeft "3477"; repStart "-1884"; chr6 rmsk exon 70566165 70566553 550 - . gene_id "ERVLE_6q13a"; transcript_id "ERVLE_6q13a"; locus "ERVLE_6q13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1631"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "2965"; repStart "-2191"; ### ERV316A3_6q13a ### chr6 rmsk gene 71103669 71105878 . - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1242"; model_cov "1108"; model_pct "21.2"; chr6 rmsk exon 71103669 71103978 817 - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1242"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "7"; repStart "-117"; chr6 rmsk exon 71103986 71104088 1095 - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1242"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "5120"; repStart "-1"; chr6 rmsk exon 71104467 71104728 1095 - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1242"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "4864"; repStart "-107"; chr6 rmsk exon 71104801 71104960 671 - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1242"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "4309"; repStart "-746"; chr6 rmsk exon 71105323 71105878 1993 - . gene_id "ERV316A3_6q13a"; transcript_id "ERV316A3_6q13a"; locus "ERV316A3_6q13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1242"; repClass "LTR"; repEnd "4282"; repFamily "ERVL"; repLeft "3705"; repStart "-944"; ### HERVH_6q13 ### chr6 rmsk gene 71748397 71753765 . - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0562"; model_cov "5247"; model_pct "68.0"; chr6 rmsk exon 71748397 71748805 2765 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-40"; chr6 rmsk exon 71748806 71749183 2419 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 71749182 71749385 1421 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr6 rmsk exon 71749431 71750033 2978 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 71750037 71753658 15262 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "1"; repStart "-3721"; chr6 rmsk exon 71753660 71753765 883 - . gene_id "HERVH_6q13"; transcript_id "HERVH_6q13"; locus "HERVH_6q13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0562"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "345"; repStart "0"; ### ERVLE_6q13b ### chr6 rmsk gene 71822746 71823397 . - . gene_id "ERVLE_6q13b"; transcript_id "ERVLE_6q13b"; locus "ERVLE_6q13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1633"; model_cov "641"; model_pct "11.3"; chr6 rmsk exon 71822746 71823397 1643 - . gene_id "ERVLE_6q13b"; transcript_id "ERVLE_6q13b"; locus "ERVLE_6q13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1633"; repClass "LTR"; repEnd "4595"; repFamily "ERVL"; repLeft "3954"; repStart "-1072"; ### MER41_6q13 ### chr6 rmsk gene 72144471 72146206 . - . gene_id "MER41_6q13"; transcript_id "MER41_6q13"; locus "MER41_6q13"; category "internal"; intModel "MER41-int"; locid "MER41-int_0216"; model_cov "1288"; model_pct "21.7"; chr6 rmsk exon 72144471 72144867 2322 - . gene_id "MER41_6q13"; transcript_id "MER41_6q13"; locus "MER41_6q13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0216"; repClass "LTR"; repEnd "5715"; repFamily "ERV1"; repLeft "5317"; repStart "-231"; chr6 rmsk exon 72145017 72145332 5425 - . gene_id "MER41_6q13"; transcript_id "MER41_6q13"; locus "MER41_6q13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0216"; repClass "LTR"; repEnd "5336"; repFamily "ERV1"; repLeft "5021"; repStart "-610"; chr6 rmsk exon 72145632 72146206 5425 - . gene_id "MER41_6q13"; transcript_id "MER41_6q13"; locus "MER41_6q13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0216"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4445"; repStart "-926"; ### HERVL_6q13b ### chr6 rmsk gene 72187820 72193007 . - . gene_id "HERVL_6q13b"; transcript_id "HERVL_6q13b"; locus "HERVL_6q13b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0603"; model_cov "4200"; model_pct "74.3"; chr6 rmsk exon 72187820 72188259 3114 - . gene_id "HERVL_6q13b"; transcript_id "HERVL_6q13b"; locus "HERVL_6q13b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0603"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 72188260 72190181 31787 - . gene_id "HERVL_6q13b"; transcript_id "HERVL_6q13b"; locus "HERVL_6q13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0603"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3713"; repStart "0"; chr6 rmsk exon 72190494 72192767 31787 - . gene_id "HERVL_6q13b"; transcript_id "HERVL_6q13b"; locus "HERVL_6q13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0603"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "1453"; repStart "-1942"; chr6 rmsk exon 72192771 72193007 1733 - . gene_id "HERVL_6q13b"; transcript_id "HERVL_6q13b"; locus "HERVL_6q13b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0603"; repClass "LTR"; repEnd "239"; repFamily "ERVL"; repLeft "1"; repStart "-214"; ### ERV316A3_6q13b ### chr6 rmsk gene 73286914 73288329 . + . gene_id "ERV316A3_6q13b"; transcript_id "ERV316A3_6q13b"; locus "ERV316A3_6q13b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1243"; model_cov "1437"; model_pct "27.5"; chr6 rmsk exon 73286914 73288329 3989 + . gene_id "ERV316A3_6q13b"; transcript_id "ERV316A3_6q13b"; locus "ERV316A3_6q13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1243"; repClass "LTR"; repEnd "2426"; repFamily "ERVL"; repLeft "-2800"; repStart "989"; ### HERV9_6q13 ### chr6 rmsk gene 73902988 73911215 . + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0070"; model_cov "5611"; model_pct "66.5"; chr6 rmsk exon 73902988 73904286 7350 + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0070"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr6 rmsk exon 73904287 73904345 325 + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0070"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "-8377"; repStart "1"; chr6 rmsk exon 73904348 73908939 35214 + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0070"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "-3733"; repStart "17"; chr6 rmsk exon 73908939 73909805 6872 + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0070"; repClass "LTR"; repEnd "8434"; repFamily "ERV1"; repLeft "-2"; repStart "7567"; chr6 rmsk exon 73909809 73911215 8005 + . gene_id "HERV9_6q13"; transcript_id "HERV9_6q13"; locus "HERV9_6q13"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0070"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERVLE_6q13c ### chr6 rmsk gene 73942340 73943569 . - . gene_id "ERVLE_6q13c"; transcript_id "ERVLE_6q13c"; locus "ERVLE_6q13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1634"; model_cov "1236"; model_pct "21.8"; chr6 rmsk exon 73942340 73943569 2458 - . gene_id "ERVLE_6q13c"; transcript_id "ERVLE_6q13c"; locus "ERVLE_6q13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1634"; repClass "LTR"; repEnd "1904"; repFamily "ERVL"; repLeft "668"; repStart "-3763"; ### HERVL_6q13c ### chr6 rmsk gene 74146270 74147744 . - . gene_id "HERVL_6q13c"; transcript_id "HERVL_6q13c"; locus "HERVL_6q13c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0604"; model_cov "1061"; model_pct "18.8"; chr6 rmsk exon 74146270 74146708 3185 - . gene_id "HERVL_6q13c"; transcript_id "HERVL_6q13c"; locus "HERVL_6q13c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0604"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 74146746 74147744 7595 - . gene_id "HERVL_6q13c"; transcript_id "HERVL_6q13c"; locus "HERVL_6q13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0604"; repClass "LTR"; repEnd "5617"; repFamily "ERVL"; repLeft "4556"; repStart "-37"; ### ERVLE_6q13d ### chr6 rmsk gene 74182057 74184216 . - . gene_id "ERVLE_6q13d"; transcript_id "ERVLE_6q13d"; locus "ERVLE_6q13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1635"; model_cov "1165"; model_pct "20.6"; chr6 rmsk exon 74182057 74182350 960 - . gene_id "ERVLE_6q13d"; transcript_id "ERVLE_6q13d"; locus "ERVLE_6q13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1635"; repClass "LTR"; repEnd "1444"; repFamily "ERVL"; repLeft "1152"; repStart "-4223"; chr6 rmsk exon 74183365 74184216 960 - . gene_id "ERVLE_6q13d"; transcript_id "ERVLE_6q13d"; locus "ERVLE_6q13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1635"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "278"; repStart "-4516"; ### HARLEQUIN_6q13 ### chr6 rmsk gene 74468144 74474614 . + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0089"; model_cov "5565"; model_pct "80.7"; chr6 rmsk exon 74468144 74468622 3934 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 74468623 74469000 2631 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chr6 rmsk exon 74468996 74469641 4528 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "262"; chr6 rmsk exon 74469627 74470616 6550 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1572"; chr6 rmsk exon 74470616 74474132 23826 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "3352"; chr6 rmsk exon 74474133 74474614 3914 + . gene_id "HARLEQUIN_6q13"; transcript_id "HARLEQUIN_6q13"; locus "HARLEQUIN_6q13"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0089"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_6q13d ### chr6 rmsk gene 74536730 74543402 . + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0605"; model_cov "5705"; model_pct "100.0"; chr6 rmsk exon 74536730 74537105 2966 + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0605"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-67"; repStart "1"; chr6 rmsk exon 74537167 74537897 5371 + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0605"; repClass "LTR"; repEnd "788"; repFamily "ERVL"; repLeft "-4866"; repStart "55"; chr6 rmsk exon 74537878 74542840 36910 + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0605"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "682"; chr6 rmsk exon 74542841 74543279 2921 + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0605"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr6 rmsk exon 74543363 74543402 2921 + . gene_id "HERVL_6q13d"; transcript_id "HERVL_6q13d"; locus "HERVL_6q13d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0605"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; ### HERVL_6q13e ### chr6 rmsk gene 74555533 74560563 . - . gene_id "HERVL_6q13e"; transcript_id "HERVL_6q13e"; locus "HERVL_6q13e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0606"; model_cov "4381"; model_pct "77.5"; chr6 rmsk exon 74555533 74559893 33343 - . gene_id "HERVL_6q13e"; transcript_id "HERVL_6q13e"; locus "HERVL_6q13e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0606"; repClass "LTR"; repEnd "4382"; repFamily "ERVL"; repLeft "1"; repStart "-1272"; chr6 rmsk exon 74559894 74559933 312 - . gene_id "HERVL_6q13e"; transcript_id "HERVL_6q13e"; locus "HERVL_6q13e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0606"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr6 rmsk exon 74560058 74560071 232 - . gene_id "HERVL_6q13e"; transcript_id "HERVL_6q13e"; locus "HERVL_6q13e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0606"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "393"; repStart "-38"; chr6 rmsk exon 74560176 74560563 2674 - . gene_id "HERVL_6q13e"; transcript_id "HERVL_6q13e"; locus "HERVL_6q13e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0606"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-45"; ### HERVL_6q13f ### chr6 rmsk gene 74560564 74562305 . + . gene_id "HERVL_6q13f"; transcript_id "HERVL_6q13f"; locus "HERVL_6q13f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0607"; model_cov "1199"; model_pct "21.2"; chr6 rmsk exon 74560564 74561744 8602 + . gene_id "HERVL_6q13f"; transcript_id "HERVL_6q13f"; locus "HERVL_6q13f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0607"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4455"; chr6 rmsk exon 74561746 74562305 1412 + . gene_id "HERVL_6q13f"; transcript_id "HERVL_6q13f"; locus "HERVL_6q13f"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0607"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLB4_6q14.1a ### chr6 rmsk gene 75513977 75515819 . - . gene_id "ERVLB4_6q14.1a"; transcript_id "ERVLB4_6q14.1a"; locus "ERVLB4_6q14.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0715"; model_cov "1375"; model_pct "24.1"; chr6 rmsk exon 75513977 75514506 2618 - . gene_id "ERVLB4_6q14.1a"; transcript_id "ERVLB4_6q14.1a"; locus "ERVLB4_6q14.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0715"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr6 rmsk exon 75514507 75515819 33320 - . gene_id "ERVLB4_6q14.1a"; transcript_id "ERVLB4_6q14.1a"; locus "ERVLB4_6q14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0715"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4339"; repStart "0"; ### ERVLB4_6q14.1b ### chr6 rmsk gene 75515857 75521230 . - . gene_id "ERVLB4_6q14.1b"; transcript_id "ERVLB4_6q14.1b"; locus "ERVLB4_6q14.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0716"; model_cov "4336"; model_pct "75.9"; chr6 rmsk exon 75515857 75518327 33320 - . gene_id "ERVLB4_6q14.1b"; transcript_id "ERVLB4_6q14.1b"; locus "ERVLB4_6q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0716"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3124"; repStart "0"; chr6 rmsk exon 75518920 75520702 33320 - . gene_id "ERVLB4_6q14.1b"; transcript_id "ERVLB4_6q14.1b"; locus "ERVLB4_6q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0716"; repClass "LTR"; repEnd "1747"; repFamily "ERVL"; repLeft "1"; repStart "-3967"; chr6 rmsk exon 75520703 75521230 2634 - . gene_id "ERVLB4_6q14.1b"; transcript_id "ERVLB4_6q14.1b"; locus "ERVLB4_6q14.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0716"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER101_6q14.1a ### chr6 rmsk gene 75588398 75591397 . - . gene_id "MER101_6q14.1a"; transcript_id "MER101_6q14.1a"; locus "MER101_6q14.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0182"; model_cov "2738"; model_pct "41.2"; chr6 rmsk exon 75588398 75588871 2295 - . gene_id "MER101_6q14.1a"; transcript_id "MER101_6q14.1a"; locus "MER101_6q14.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0182"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 75588872 75589478 2469 - . gene_id "MER101_6q14.1a"; transcript_id "MER101_6q14.1a"; locus "MER101_6q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0182"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6005"; repStart "0"; chr6 rmsk exon 75589798 75590487 3151 - . gene_id "MER101_6q14.1a"; transcript_id "MER101_6q14.1a"; locus "MER101_6q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0182"; repClass "LTR"; repEnd "4609"; repFamily "ERV1"; repLeft "3603"; repStart "-2030"; chr6 rmsk exon 75590806 75591397 3151 - . gene_id "MER101_6q14.1a"; transcript_id "MER101_6q14.1a"; locus "MER101_6q14.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0182"; repClass "LTR"; repEnd "4253"; repFamily "ERV1"; repLeft "3155"; repStart "-2386"; ### MER101_6q14.1b ### chr6 rmsk gene 75591702 75594878 . - . gene_id "MER101_6q14.1b"; transcript_id "MER101_6q14.1b"; locus "MER101_6q14.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0183"; model_cov "1997"; model_pct "30.1"; chr6 rmsk exon 75591702 75591767 2093 - . gene_id "MER101_6q14.1b"; transcript_id "MER101_6q14.1b"; locus "MER101_6q14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0183"; repClass "LTR"; repEnd "4857"; repFamily "ERV1"; repLeft "4803"; repStart "-1782"; chr6 rmsk exon 75592069 75593052 4275 - . gene_id "MER101_6q14.1b"; transcript_id "MER101_6q14.1b"; locus "MER101_6q14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0183"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "2474"; repStart "-2854"; chr6 rmsk exon 75593148 75593276 583 - . gene_id "MER101_6q14.1b"; transcript_id "MER101_6q14.1b"; locus "MER101_6q14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0183"; repClass "LTR"; repEnd "2889"; repFamily "ERV1"; repLeft "2760"; repStart "-3750"; chr6 rmsk exon 75594377 75594878 2800 - . gene_id "MER101_6q14.1b"; transcript_id "MER101_6q14.1b"; locus "MER101_6q14.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0183"; repClass "LTR"; repEnd "2751"; repFamily "ERV1"; repLeft "2248"; repStart "-3888"; ### MER61_6q14.1a ### chr6 rmsk gene 76025941 76031158 . + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0176"; model_cov "4249"; model_pct "81.4"; chr6 rmsk exon 76025941 76026297 1707 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0176"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 76026299 76026837 2449 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0176"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "1"; chr6 rmsk exon 76026933 76028547 23896 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0176"; repClass "LTR"; repEnd "3000"; repFamily "ERV1"; repLeft "-2217"; repStart "1320"; chr6 rmsk exon 76028833 76030638 23896 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0176"; repClass "LTR"; repEnd "4814"; repFamily "ERV1"; repLeft "-403"; repStart "3001"; chr6 rmsk exon 76030639 76030840 1348 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0176"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5009"; chr6 rmsk exon 76030841 76031158 1562 + . gene_id "MER61_6q14.1a"; transcript_id "MER61_6q14.1a"; locus "MER61_6q14.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0176"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q14.1a ### chr6 rmsk gene 76229141 76229997 . - . gene_id "ERVLE_6q14.1a"; transcript_id "ERVLE_6q14.1a"; locus "ERVLE_6q14.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1636"; model_cov "910"; model_pct "16.1"; chr6 rmsk exon 76229141 76229997 1147 - . gene_id "ERVLE_6q14.1a"; transcript_id "ERVLE_6q14.1a"; locus "ERVLE_6q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1636"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "2026"; repStart "-2731"; ### ERVLE_6q14.1b ### chr6 rmsk gene 76321790 76322521 . + . gene_id "ERVLE_6q14.1b"; transcript_id "ERVLE_6q14.1b"; locus "ERVLE_6q14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1637"; model_cov "686"; model_pct "12.1"; chr6 rmsk exon 76321790 76322144 633 + . gene_id "ERVLE_6q14.1b"; transcript_id "ERVLE_6q14.1b"; locus "ERVLE_6q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1637"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "-2224"; repStart "3064"; chr6 rmsk exon 76322254 76322521 734 + . gene_id "ERVLE_6q14.1b"; transcript_id "ERVLE_6q14.1b"; locus "ERVLE_6q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1637"; repClass "LTR"; repEnd "3940"; repFamily "ERVL"; repLeft "-1727"; repStart "3633"; ### HERVK11_6q14.1a ### chr6 rmsk gene 76487341 76492036 . - . gene_id "HERVK11_6q14.1a"; transcript_id "HERVK11_6q14.1a"; locus "HERVK11_6q14.1a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0042"; model_cov "4295"; model_pct "54.0"; chr6 rmsk exon 76487341 76487910 3821 - . gene_id "HERVK11_6q14.1a"; transcript_id "HERVK11_6q14.1a"; locus "HERVK11_6q14.1a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0042"; repClass "LTR"; repEnd "581"; repFamily "ERVK"; repLeft "1"; repStart "-655"; chr6 rmsk exon 76487911 76492036 50878 - . gene_id "HERVK11_6q14.1a"; transcript_id "HERVK11_6q14.1a"; locus "HERVK11_6q14.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0042"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "3658"; repStart "0"; ### HERVK11_6q14.1b ### chr6 rmsk gene 76492103 76496698 . - . gene_id "HERVK11_6q14.1b"; transcript_id "HERVK11_6q14.1b"; locus "HERVK11_6q14.1b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0043"; model_cov "3656"; model_pct "46.0"; chr6 rmsk exon 76492103 76495613 50878 - . gene_id "HERVK11_6q14.1b"; transcript_id "HERVK11_6q14.1b"; locus "HERVK11_6q14.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0043"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "4297"; repStart "0"; chr6 rmsk exon 76495619 76496698 6191 - . gene_id "HERVK11_6q14.1b"; transcript_id "HERVK11_6q14.1b"; locus "HERVK11_6q14.1b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0043"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### ERVLE_6q14.1c ### chr6 rmsk gene 76518418 76519780 . + . gene_id "ERVLE_6q14.1c"; transcript_id "ERVLE_6q14.1c"; locus "ERVLE_6q14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1638"; model_cov "1004"; model_pct "17.7"; chr6 rmsk exon 76518418 76518507 405 + . gene_id "ERVLE_6q14.1c"; transcript_id "ERVLE_6q14.1c"; locus "ERVLE_6q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1638"; repClass "LTR"; repEnd "4694"; repFamily "ERVL"; repLeft "-973"; repStart "4610"; chr6 rmsk exon 76518911 76519780 1817 + . gene_id "ERVLE_6q14.1c"; transcript_id "ERVLE_6q14.1c"; locus "ERVLE_6q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1638"; repClass "LTR"; repEnd "5610"; repFamily "ERVL"; repLeft "-57"; repStart "4690"; ### ERVLE_6q14.1d ### chr6 rmsk gene 76641859 76646227 . - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1639"; model_cov "2965"; model_pct "52.3"; chr6 rmsk exon 76641859 76642186 570 - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1639"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "4869"; repStart "-445"; chr6 rmsk exon 76643147 76643730 1098 - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1639"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4114"; repStart "-949"; chr6 rmsk exon 76644143 76644568 946 - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1639"; repClass "LTR"; repEnd "3530"; repFamily "ERVL"; repLeft "3053"; repStart "-2137"; chr6 rmsk exon 76644702 76645660 2030 - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1639"; repClass "LTR"; repEnd "2660"; repFamily "ERVL"; repLeft "1697"; repStart "-3007"; chr6 rmsk exon 76645699 76646227 617 - . gene_id "ERVLE_6q14.1d"; transcript_id "ERVLE_6q14.1d"; locus "ERVLE_6q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1639"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "1069"; repStart "-4030"; ### ERVLE_6q14.1e ### chr6 rmsk gene 76684905 76689159 . + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1640"; model_cov "2466"; model_pct "43.5"; chr6 rmsk exon 76684905 76685299 415 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "-175"; repStart "2"; chr6 rmsk exon 76685324 76685516 415 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "469"; chr6 rmsk exon 76685582 76685736 511 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "-5467"; repStart "47"; chr6 rmsk exon 76685753 76686700 4867 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "1484"; repFamily "ERVL"; repLeft "-4183"; repStart "512"; chr6 rmsk exon 76687009 76687692 4867 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "2177"; repFamily "ERVL"; repLeft "-3490"; repStart "1485"; chr6 rmsk exon 76688553 76688859 1219 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "3123"; repFamily "ERVL"; repLeft "-2544"; repStart "2806"; chr6 rmsk exon 76688862 76689159 1290 + . gene_id "ERVLE_6q14.1e"; transcript_id "ERVLE_6q14.1e"; locus "ERVLE_6q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1640"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "-1867"; repStart "3468"; ### ERVLE_6q14.1f ### chr6 rmsk gene 76781609 76782996 . + . gene_id "ERVLE_6q14.1f"; transcript_id "ERVLE_6q14.1f"; locus "ERVLE_6q14.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1641"; model_cov "1203"; model_pct "21.2"; chr6 rmsk exon 76781609 76782025 1196 + . gene_id "ERVLE_6q14.1f"; transcript_id "ERVLE_6q14.1f"; locus "ERVLE_6q14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1641"; repClass "LTR"; repEnd "3420"; repFamily "ERVL"; repLeft "-2247"; repStart "2992"; chr6 rmsk exon 76782302 76782996 1723 + . gene_id "ERVLE_6q14.1f"; transcript_id "ERVLE_6q14.1f"; locus "ERVLE_6q14.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1641"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "-1148"; repStart "3744"; ### HUERSP2_6q14.1 ### chr6 rmsk gene 76988401 76992900 . + . gene_id "HUERSP2_6q14.1"; transcript_id "HUERSP2_6q14.1"; locus "HUERSP2_6q14.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0060"; model_cov "3010"; model_pct "97.5"; chr6 rmsk exon 76988401 76989171 4529 + . gene_id "HUERSP2_6q14.1"; transcript_id "HUERSP2_6q14.1"; locus "HUERSP2_6q14.1"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0060"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 76989172 76989301 674 + . gene_id "HUERSP2_6q14.1"; transcript_id "HUERSP2_6q14.1"; locus "HUERSP2_6q14.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0060"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "1"; chr6 rmsk exon 76989315 76992109 16300 + . gene_id "HUERSP2_6q14.1"; transcript_id "HUERSP2_6q14.1"; locus "HUERSP2_6q14.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0060"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "204"; chr6 rmsk exon 76992110 76992900 4550 + . gene_id "HUERSP2_6q14.1"; transcript_id "HUERSP2_6q14.1"; locus "HUERSP2_6q14.1"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0060"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_6q14.1b ### chr6 rmsk gene 77094622 77100378 . + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0177"; model_cov "4912"; model_pct "94.2"; chr6 rmsk exon 77094622 77095051 2836 + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0177"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "5"; chr6 rmsk exon 77095053 77095262 759 + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0177"; repClass "LTR"; repEnd "209"; repFamily "ERV1"; repLeft "-5008"; repStart "2"; chr6 rmsk exon 77095268 77096164 4352 + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0177"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "364"; chr6 rmsk exon 77096160 77099956 24769 + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0177"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1361"; chr6 rmsk exon 77099957 77100378 2843 + . gene_id "MER61_6q14.1b"; transcript_id "MER61_6q14.1b"; locus "MER61_6q14.1b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0177"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6q14.1a ### chr6 rmsk gene 77149660 77152315 . + . gene_id "ERV316A3_6q14.1a"; transcript_id "ERV316A3_6q14.1a"; locus "ERV316A3_6q14.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1244"; model_cov "2253"; model_pct "43.1"; chr6 rmsk exon 77149660 77151120 3210 + . gene_id "ERV316A3_6q14.1a"; transcript_id "ERV316A3_6q14.1a"; locus "ERV316A3_6q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1244"; repClass "LTR"; repEnd "2176"; repFamily "ERVL"; repLeft "-3050"; repStart "731"; chr6 rmsk exon 77151541 77152315 3210 + . gene_id "ERV316A3_6q14.1a"; transcript_id "ERV316A3_6q14.1a"; locus "ERV316A3_6q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1244"; repClass "LTR"; repEnd "2985"; repFamily "ERVL"; repLeft "-2241"; repStart "2177"; ### HERVL_6q14.1a ### chr6 rmsk gene 77234985 77239787 . + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0608"; model_cov "3694"; model_pct "65.3"; chr6 rmsk exon 77234985 77235445 2933 + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0608"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 77235446 77238573 13551 + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0608"; repClass "LTR"; repEnd "3046"; repFamily "ERVL"; repLeft "-2608"; repStart "1"; chr6 rmsk exon 77238563 77239218 4567 + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0608"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5005"; chr6 rmsk exon 77239219 77239638 2740 + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0608"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "10"; chr6 rmsk exon 77239712 77239787 313 + . gene_id "HERVL_6q14.1a"; transcript_id "HERVL_6q14.1a"; locus "HERVL_6q14.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0608"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "372"; ### ERVLE_6q14.1g ### chr6 rmsk gene 77322889 77326117 . + . gene_id "ERVLE_6q14.1g"; transcript_id "ERVLE_6q14.1g"; locus "ERVLE_6q14.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1643"; model_cov "2545"; model_pct "44.9"; chr6 rmsk exon 77322889 77324511 2217 + . gene_id "ERVLE_6q14.1g"; transcript_id "ERVLE_6q14.1g"; locus "ERVLE_6q14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1643"; repClass "LTR"; repEnd "3397"; repFamily "ERVL"; repLeft "-2270"; repStart "1742"; chr6 rmsk exon 77325078 77325569 787 + . gene_id "ERVLE_6q14.1g"; transcript_id "ERVLE_6q14.1g"; locus "ERVLE_6q14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1643"; repClass "LTR"; repEnd "4646"; repFamily "ERVL"; repLeft "-1021"; repStart "4007"; chr6 rmsk exon 77325677 77325782 292 + . gene_id "ERVLE_6q14.1g"; transcript_id "ERVLE_6q14.1g"; locus "ERVLE_6q14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1643"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "-759"; repStart "4802"; chr6 rmsk exon 77325970 77326117 277 + . gene_id "ERVLE_6q14.1g"; transcript_id "ERVLE_6q14.1g"; locus "ERVLE_6q14.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1643"; repClass "LTR"; repEnd "5252"; repFamily "ERVL"; repLeft "-415"; repStart "5107"; ### ERVLE_6q14.1h ### chr6 rmsk gene 77356728 77363902 . + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1644"; model_cov "1938"; model_pct "34.2"; chr6 rmsk exon 77356728 77357096 514 + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1644"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "-5124"; repStart "163"; chr6 rmsk exon 77358799 77359138 337 + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1644"; repClass "LTR"; repEnd "1213"; repFamily "ERVL"; repLeft "-4454"; repStart "882"; chr6 rmsk exon 77359638 77360102 492 + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1644"; repClass "LTR"; repEnd "1871"; repFamily "ERVL"; repLeft "-3796"; repStart "1334"; chr6 rmsk exon 77360783 77361286 1214 + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1644"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "-2903"; repStart "2241"; chr6 rmsk exon 77363736 77363902 532 + . gene_id "ERVLE_6q14.1h"; transcript_id "ERVLE_6q14.1h"; locus "ERVLE_6q14.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1644"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "-1902"; repStart "3598"; ### ERVLB4_6q14.1c ### chr6 rmsk gene 77364124 77365171 . + . gene_id "ERVLB4_6q14.1c"; transcript_id "ERVLB4_6q14.1c"; locus "ERVLB4_6q14.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0717"; model_cov "1072"; model_pct "18.8"; chr6 rmsk exon 77364124 77364500 565 + . gene_id "ERVLB4_6q14.1c"; transcript_id "ERVLB4_6q14.1c"; locus "ERVLB4_6q14.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0717"; repClass "LTR"; repEnd "3759"; repFamily "ERVL"; repLeft "-1955"; repStart "3363"; chr6 rmsk exon 77364510 77365171 1689 + . gene_id "ERVLB4_6q14.1c"; transcript_id "ERVLB4_6q14.1c"; locus "ERVLB4_6q14.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0717"; repClass "LTR"; repEnd "4507"; repFamily "ERVL"; repLeft "-1207"; repStart "3831"; ### HUERSP3_6q14.1 ### chr6 rmsk gene 77504256 77514114 . - . gene_id "HUERSP3_6q14.1"; transcript_id "HUERSP3_6q14.1"; locus "HUERSP3_6q14.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0083"; model_cov "8669"; model_pct "97.2"; chr6 rmsk exon 77504256 77504866 4208 - . gene_id "HUERSP3_6q14.1"; transcript_id "HUERSP3_6q14.1"; locus "HUERSP3_6q14.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0083"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 77504867 77506866 12820 - . gene_id "HUERSP3_6q14.1"; transcript_id "HUERSP3_6q14.1"; locus "HUERSP3_6q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0083"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "6889"; repStart "-1"; chr6 rmsk exon 77506861 77513487 42629 - . gene_id "HUERSP3_6q14.1"; transcript_id "HUERSP3_6q14.1"; locus "HUERSP3_6q14.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0083"; repClass "LTR"; repEnd "6655"; repFamily "ERV1"; repLeft "15"; repStart "-2264"; chr6 rmsk exon 77513503 77514114 4235 - . gene_id "HUERSP3_6q14.1"; transcript_id "HUERSP3_6q14.1"; locus "HUERSP3_6q14.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0083"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_6q14.1b ### chr6 rmsk gene 77591531 77597490 . - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0609"; model_cov "5168"; model_pct "91.4"; chr6 rmsk exon 77591531 77591921 3027 - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0609"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr6 rmsk exon 77591928 77593217 9988 - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0609"; repClass "LTR"; repEnd "5647"; repFamily "ERVL"; repLeft "4337"; repStart "-7"; chr6 rmsk exon 77593211 77595076 13965 - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0609"; repClass "LTR"; repEnd "4020"; repFamily "ERVL"; repLeft "2135"; repStart "-1634"; chr6 rmsk exon 77595068 77597043 14912 - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0609"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "1"; repStart "-3680"; chr6 rmsk exon 77597044 77597490 3156 - . gene_id "HERVL_6q14.1b"; transcript_id "HERVL_6q14.1b"; locus "HERVL_6q14.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0609"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_6q14.1a ### chr6 rmsk gene 77658021 77666441 . - . gene_id "HERVH_6q14.1a"; transcript_id "HERVH_6q14.1a"; locus "HERVH_6q14.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0563"; model_cov "7524"; model_pct "97.5"; chr6 rmsk exon 77658021 77658462 3429 - . gene_id "HERVH_6q14.1a"; transcript_id "HERVH_6q14.1a"; locus "HERVH_6q14.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0563"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 77658463 77662750 29374 - . gene_id "HERVH_6q14.1a"; transcript_id "HERVH_6q14.1a"; locus "HERVH_6q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0563"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3478"; repStart "0"; chr6 rmsk exon 77662741 77665997 19800 - . gene_id "HERVH_6q14.1a"; transcript_id "HERVH_6q14.1a"; locus "HERVH_6q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0563"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr6 rmsk exon 77666000 77666441 3407 - . gene_id "HERVH_6q14.1a"; transcript_id "HERVH_6q14.1a"; locus "HERVH_6q14.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0563"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML2_6q14.1 ### chr6 rmsk gene 77716945 77726366 . - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0053"; model_cov "7440"; model_pct "98.7"; chr6 rmsk exon 77716945 77717904 8674 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 77718000 77725406 48157 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr6 rmsk exon 77725407 77726366 8726 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6q14.1i ### chr6 rmsk gene 77825959 77826964 . - . gene_id "ERVLE_6q14.1i"; transcript_id "ERVLE_6q14.1i"; locus "ERVLE_6q14.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1646"; model_cov "884"; model_pct "15.6"; chr6 rmsk exon 77825959 77826082 318 - . gene_id "ERVLE_6q14.1i"; transcript_id "ERVLE_6q14.1i"; locus "ERVLE_6q14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1646"; repClass "LTR"; repEnd "4661"; repFamily "ERVL"; repLeft "4541"; repStart "-1006"; chr6 rmsk exon 77826177 77826693 878 - . gene_id "ERVLE_6q14.1i"; transcript_id "ERVLE_6q14.1i"; locus "ERVLE_6q14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1646"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "2812"; repStart "-2331"; chr6 rmsk exon 77826720 77826964 802 - . gene_id "ERVLE_6q14.1i"; transcript_id "ERVLE_6q14.1i"; locus "ERVLE_6q14.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1646"; repClass "LTR"; repEnd "2457"; repFamily "ERVL"; repLeft "2217"; repStart "-3210"; ### ERVLE_6q14.1j ### chr6 rmsk gene 77940410 77942419 . - . gene_id "ERVLE_6q14.1j"; transcript_id "ERVLE_6q14.1j"; locus "ERVLE_6q14.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1647"; model_cov "1137"; model_pct "20.1"; chr6 rmsk exon 77940410 77940878 907 - . gene_id "ERVLE_6q14.1j"; transcript_id "ERVLE_6q14.1j"; locus "ERVLE_6q14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1647"; repClass "LTR"; repEnd "3454"; repFamily "ERVL"; repLeft "2985"; repStart "-2213"; chr6 rmsk exon 77941173 77941382 907 - . gene_id "ERVLE_6q14.1j"; transcript_id "ERVLE_6q14.1j"; locus "ERVLE_6q14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1647"; repClass "LTR"; repEnd "2984"; repFamily "ERVL"; repLeft "2772"; repStart "-2683"; chr6 rmsk exon 77941710 77941789 314 - . gene_id "ERVLE_6q14.1j"; transcript_id "ERVLE_6q14.1j"; locus "ERVLE_6q14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1647"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "1050"; repStart "-4538"; chr6 rmsk exon 77942053 77942419 562 - . gene_id "ERVLE_6q14.1j"; transcript_id "ERVLE_6q14.1j"; locus "ERVLE_6q14.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1647"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "118"; repStart "-5172"; ### ERV316A3_6q14.1b ### chr6 rmsk gene 78053330 78054727 . - . gene_id "ERV316A3_6q14.1b"; transcript_id "ERV316A3_6q14.1b"; locus "ERV316A3_6q14.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1245"; model_cov "1362"; model_pct "26.1"; chr6 rmsk exon 78053330 78053497 488 - . gene_id "ERV316A3_6q14.1b"; transcript_id "ERV316A3_6q14.1b"; locus "ERV316A3_6q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1245"; repClass "LTR"; repEnd "4961"; repFamily "ERVL"; repLeft "4787"; repStart "-265"; chr6 rmsk exon 78053547 78054727 2080 - . gene_id "ERV316A3_6q14.1b"; transcript_id "ERV316A3_6q14.1b"; locus "ERV316A3_6q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1245"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "3622"; repStart "-416"; ### HERVL_6q14.1c ### chr6 rmsk gene 78098970 78100473 . - . gene_id "HERVL_6q14.1c"; transcript_id "HERVL_6q14.1c"; locus "HERVL_6q14.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0610"; model_cov "1168"; model_pct "20.7"; chr6 rmsk exon 78098970 78100057 4519 - . gene_id "HERVL_6q14.1c"; transcript_id "HERVL_6q14.1c"; locus "HERVL_6q14.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0610"; repClass "LTR"; repEnd "1170"; repFamily "ERVL"; repLeft "2"; repStart "-4484"; chr6 rmsk exon 78100061 78100473 2972 - . gene_id "HERVL_6q14.1c"; transcript_id "HERVL_6q14.1c"; locus "HERVL_6q14.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0610"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML5_6q14.1 ### chr6 rmsk gene 78132473 78140711 . + . gene_id "HML5_6q14.1"; transcript_id "HML5_6q14.1"; locus "HML5_6q14.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0051"; model_cov "6835"; model_pct "100.0"; chr6 rmsk exon 78132473 78132952 3235 + . gene_id "HML5_6q14.1"; transcript_id "HML5_6q14.1"; locus "HML5_6q14.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0051"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 78132953 78133041 50200 + . gene_id "HML5_6q14.1"; transcript_id "HML5_6q14.1"; locus "HML5_6q14.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0051"; repClass "LTR"; repEnd "99"; repFamily "ERVK"; repLeft "-6738"; repStart "1"; chr6 rmsk exon 78133560 78140229 50200 + . gene_id "HML5_6q14.1"; transcript_id "HML5_6q14.1"; locus "HML5_6q14.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0051"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "100"; chr6 rmsk exon 78140230 78140711 3322 + . gene_id "HML5_6q14.1"; transcript_id "HML5_6q14.1"; locus "HML5_6q14.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0051"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_6q14.1c ### chr6 rmsk gene 78341956 78343451 . + . gene_id "ERV316A3_6q14.1c"; transcript_id "ERV316A3_6q14.1c"; locus "ERV316A3_6q14.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1246"; model_cov "1564"; model_pct "29.9"; chr6 rmsk exon 78341956 78342039 268 + . gene_id "ERV316A3_6q14.1c"; transcript_id "ERV316A3_6q14.1c"; locus "ERV316A3_6q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1246"; repClass "LTR"; repEnd "2461"; repFamily "ERVL"; repLeft "-2765"; repStart "2374"; chr6 rmsk exon 78342130 78342797 1273 + . gene_id "ERV316A3_6q14.1c"; transcript_id "ERV316A3_6q14.1c"; locus "ERV316A3_6q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1246"; repClass "LTR"; repEnd "4137"; repFamily "ERVL"; repLeft "-1089"; repStart "3358"; chr6 rmsk exon 78342810 78343451 729 + . gene_id "ERV316A3_6q14.1c"; transcript_id "ERV316A3_6q14.1c"; locus "ERV316A3_6q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1246"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "-348"; repStart "4180"; ### HERVH_6q14.1b ### chr6 rmsk gene 78585675 78588109 . + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0564"; model_cov "2425"; model_pct "31.4"; chr6 rmsk exon 78585675 78586789 7497 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1876"; chr6 rmsk exon 78586784 78586931 886 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 78586922 78587069 910 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-4075"; repStart "3492"; chr6 rmsk exon 78587060 78587420 1179 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4744"; chr6 rmsk exon 78587418 78587638 1296 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr6 rmsk exon 78587637 78588014 2510 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 78588015 78588109 741 + . gene_id "HERVH_6q14.1b"; transcript_id "HERVH_6q14.1b"; locus "HERVH_6q14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0564"; repClass "LTR"; repEnd "95"; repFamily "ERV1"; repLeft "-355"; repStart "1"; ### MER61_6q14.1c ### chr6 rmsk gene 78673776 78675966 . - . gene_id "MER61_6q14.1c"; transcript_id "MER61_6q14.1c"; locus "MER61_6q14.1c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0178"; model_cov "1888"; model_pct "36.2"; chr6 rmsk exon 78673776 78674106 1896 - . gene_id "MER61_6q14.1c"; transcript_id "MER61_6q14.1c"; locus "MER61_6q14.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0178"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 78674107 78675966 12650 - . gene_id "MER61_6q14.1c"; transcript_id "MER61_6q14.1c"; locus "MER61_6q14.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0178"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3329"; repStart "0"; ### HML1_6q14.1 ### chr6 rmsk gene 78854118 78858747 . + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0039"; model_cov "3935"; model_pct "64.6"; chr6 rmsk exon 78854118 78854531 2055 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 78854532 78857411 21995 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "2882"; repFamily "ERVK"; repLeft "-3214"; repStart "1"; chr6 rmsk exon 78857382 78857949 1879 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "-490"; repStart "4928"; chr6 rmsk exon 78857945 78858130 1747 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "5929"; repFamily "ERVK"; repLeft "-167"; repStart "5716"; chr6 rmsk exon 78858188 78858328 1747 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "6093"; repFamily "ERVK"; repLeft "-3"; repStart "5930"; chr6 rmsk exon 78858334 78858747 2125 + . gene_id "HML1_6q14.1"; transcript_id "HML1_6q14.1"; locus "HML1_6q14.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0039"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER41_6q14.1a ### chr6 rmsk gene 79257432 79258797 . - . gene_id "MER41_6q14.1a"; transcript_id "MER41_6q14.1a"; locus "MER41_6q14.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0218"; model_cov "1115"; model_pct "18.8"; chr6 rmsk exon 79257432 79257505 349 - . gene_id "MER41_6q14.1a"; transcript_id "MER41_6q14.1a"; locus "MER41_6q14.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0218"; repClass "LTR"; repEnd "295"; repFamily "ERV1"; repLeft "219"; repStart "-339"; chr6 rmsk exon 79257574 79257701 877 - . gene_id "MER41_6q14.1a"; transcript_id "MER41_6q14.1a"; locus "MER41_6q14.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0218"; repClass "LTR"; repEnd "126"; repFamily "ERV1"; repLeft "1"; repStart "-508"; chr6 rmsk exon 79257702 79258797 7380 - . gene_id "MER41_6q14.1a"; transcript_id "MER41_6q14.1a"; locus "MER41_6q14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0218"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4831"; repStart "0"; ### MER41_6q14.1b ### chr6 rmsk gene 79262321 79264710 . - . gene_id "MER41_6q14.1b"; transcript_id "MER41_6q14.1b"; locus "MER41_6q14.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0219"; model_cov "2452"; model_pct "41.2"; chr6 rmsk exon 79262321 79262746 2518 - . gene_id "MER41_6q14.1b"; transcript_id "MER41_6q14.1b"; locus "MER41_6q14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0219"; repClass "LTR"; repEnd "2603"; repFamily "ERV1"; repLeft "2167"; repStart "-3343"; chr6 rmsk exon 79262743 79264556 8074 - . gene_id "MER41_6q14.1b"; transcript_id "MER41_6q14.1b"; locus "MER41_6q14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0219"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1"; repStart "-3929"; chr6 rmsk exon 79264557 79264710 1092 - . gene_id "MER41_6q14.1b"; transcript_id "MER41_6q14.1b"; locus "MER41_6q14.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0219"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### HERVL18_6q14.1 ### chr6 rmsk gene 79307594 79313548 . - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0073"; model_cov "5459"; model_pct "90.3"; chr6 rmsk exon 79307594 79307926 2252 - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0073"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr6 rmsk exon 79307930 79311218 20454 - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0073"; repClass "LTR"; repEnd "6045"; repFamily "ERVL"; repLeft "2720"; repStart "-2"; chr6 rmsk exon 79311218 79311477 1145 - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0073"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr6 rmsk exon 79311477 79313200 8150 - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0073"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "9"; repStart "-4237"; chr6 rmsk exon 79313215 79313548 2143 - . gene_id "HERVL18_6q14.1"; transcript_id "HERVL18_6q14.1"; locus "HERVL18_6q14.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0073"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERV316A3_6q14.1d ### chr6 rmsk gene 79381052 79381557 . - . gene_id "ERV316A3_6q14.1d"; transcript_id "ERV316A3_6q14.1d"; locus "ERV316A3_6q14.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1249"; model_cov "534"; model_pct "10.2"; chr6 rmsk exon 79381052 79381209 348 - . gene_id "ERV316A3_6q14.1d"; transcript_id "ERV316A3_6q14.1d"; locus "ERV316A3_6q14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1249"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "3212"; repStart "-1853"; chr6 rmsk exon 79381213 79381557 1081 - . gene_id "ERV316A3_6q14.1d"; transcript_id "ERV316A3_6q14.1d"; locus "ERV316A3_6q14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1249"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "2666"; repStart "-2187"; ### HERVP71A_6q14.1 ### chr6 rmsk gene 79525295 79529614 . + . gene_id "HERVP71A_6q14.1"; transcript_id "HERVP71A_6q14.1"; locus "HERVP71A_6q14.1"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0035"; model_cov "3568"; model_pct "47.0"; chr6 rmsk exon 79525295 79525774 3698 + . gene_id "HERVP71A_6q14.1"; transcript_id "HERVP71A_6q14.1"; locus "HERVP71A_6q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0035"; repClass "LTR"; repEnd "1647"; repFamily "ERV1"; repLeft "-5943"; repStart "1169"; chr6 rmsk exon 79525912 79526261 23281 + . gene_id "HERVP71A_6q14.1"; transcript_id "HERVP71A_6q14.1"; locus "HERVP71A_6q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0035"; repClass "LTR"; repEnd "4847"; repFamily "ERV1"; repLeft "-2743"; repStart "4499"; chr6 rmsk exon 79526572 79529321 23281 + . gene_id "HERVP71A_6q14.1"; transcript_id "HERVP71A_6q14.1"; locus "HERVP71A_6q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0035"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "4848"; chr6 rmsk exon 79529323 79529614 1709 + . gene_id "HERVP71A_6q14.1"; transcript_id "HERVP71A_6q14.1"; locus "HERVP71A_6q14.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0035"; repClass "LTR"; repEnd "264"; repFamily "ERV1"; repLeft "-195"; repStart "2"; ### ERVLE_6q14.1k ### chr6 rmsk gene 79903569 79911124 . - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1649"; model_cov "5520"; model_pct "97.4"; chr6 rmsk exon 79903569 79903778 1148 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "5432"; repStart "-25"; chr6 rmsk exon 79904104 79904979 1461 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "5431"; repFamily "ERVL"; repLeft "4485"; repStart "-236"; chr6 rmsk exon 79905409 79905769 1461 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "4484"; repFamily "ERVL"; repLeft "4070"; repStart "-1183"; chr6 rmsk exon 79906509 79906980 1008 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "4076"; repFamily "ERVL"; repLeft "3505"; repStart "-1591"; chr6 rmsk exon 79907458 79908138 5504 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "3544"; repFamily "ERVL"; repLeft "2848"; repStart "-2123"; chr6 rmsk exon 79908464 79910296 5504 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "2820"; repFamily "ERVL"; repLeft "940"; repStart "-2847"; chr6 rmsk exon 79910336 79911124 1590 - . gene_id "ERVLE_6q14.1k"; transcript_id "ERVLE_6q14.1k"; locus "ERVLE_6q14.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1649"; repClass "LTR"; repEnd "853"; repFamily "ERVL"; repLeft "50"; repStart "-4814"; ### HERV4_6q14.1 ### chr6 rmsk gene 80110316 80111546 . - . gene_id "HERV4_6q14.1"; transcript_id "HERV4_6q14.1"; locus "HERV4_6q14.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0054"; model_cov "1221"; model_pct "18.7"; chr6 rmsk exon 80110316 80110732 2880 - . gene_id "HERV4_6q14.1"; transcript_id "HERV4_6q14.1"; locus "HERV4_6q14.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0054"; repClass "LTR"; repEnd "3624"; repFamily "ERV1"; repLeft "3203"; repStart "-2915"; chr6 rmsk exon 80110741 80111546 5458 - . gene_id "HERV4_6q14.1"; transcript_id "HERV4_6q14.1"; locus "HERV4_6q14.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0054"; repClass "LTR"; repEnd "3100"; repFamily "ERV1"; repLeft "2300"; repStart "-3439"; ### MER41_6q14.1c ### chr6 rmsk gene 80290637 80292242 . - . gene_id "MER41_6q14.1c"; transcript_id "MER41_6q14.1c"; locus "MER41_6q14.1c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0220"; model_cov "1071"; model_pct "18.0"; chr6 rmsk exon 80290637 80291194 3904 - . gene_id "MER41_6q14.1c"; transcript_id "MER41_6q14.1c"; locus "MER41_6q14.1c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0220"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 80291195 80292242 7303 - . gene_id "MER41_6q14.1c"; transcript_id "MER41_6q14.1c"; locus "MER41_6q14.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0220"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4873"; repStart "-2"; ### MER41_6q14.1d ### chr6 rmsk gene 80295580 80299563 . - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0221"; model_cov "3615"; model_pct "60.8"; chr6 rmsk exon 80295580 80295746 996 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "4877"; repFamily "ERV1"; repLeft "4714"; repStart "-1069"; chr6 rmsk exon 80295947 80298043 6375 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "3461"; repFamily "ERV1"; repLeft "1134"; repStart "-2485"; chr6 rmsk exon 80298040 80298111 835 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1955"; repStart "-3929"; chr6 rmsk exon 80298409 80298494 835 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "1954"; repFamily "ERV1"; repLeft "1869"; repStart "-3992"; chr6 rmsk exon 80298473 80298671 815 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "1569"; repFamily "ERV1"; repLeft "1379"; repStart "-4377"; chr6 rmsk exon 80298675 80299364 4499 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "-5258"; chr6 rmsk exon 80299374 80299449 271 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0221"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr6 rmsk exon 80299450 80299563 846 - . gene_id "MER41_6q14.1d"; transcript_id "MER41_6q14.1d"; locus "MER41_6q14.1d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0221"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "437"; repStart "0"; ### HERVL_6q14.1d ### chr6 rmsk gene 80384055 80391236 . + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0611"; model_cov "5736"; model_pct "100.0"; chr6 rmsk exon 80384055 80384348 3007 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-163"; repStart "2"; chr6 rmsk exon 80384657 80384815 3007 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "282"; chr6 rmsk exon 80384816 80386224 10696 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "1418"; repFamily "ERVL"; repLeft "-4236"; repStart "1"; chr6 rmsk exon 80386457 80390104 26146 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-632"; repStart "1334"; chr6 rmsk exon 80390141 80390763 26146 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5023"; chr6 rmsk exon 80390764 80391236 2487 + . gene_id "HERVL_6q14.1d"; transcript_id "HERVL_6q14.1d"; locus "HERVL_6q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0611"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_6q14.1c ### chr6 rmsk gene 80482838 80487823 . - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0565"; model_cov "4299"; model_pct "55.7"; chr6 rmsk exon 80482838 80483230 2211 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr6 rmsk exon 80483231 80483607 2436 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 80483606 80483826 1313 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr6 rmsk exon 80483824 80484184 1157 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4744"; repStart "-2564"; chr6 rmsk exon 80484175 80484322 931 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "3492"; repStart "-4075"; chr6 rmsk exon 80484313 80484460 852 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 80484455 80485157 20192 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2303"; repStart "-4726"; chr6 rmsk exon 80485468 80487706 20192 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "2302"; repFamily "ERV1"; repLeft "1"; repStart "-5411"; chr6 rmsk exon 80487708 80487823 913 - . gene_id "HERVH_6q14.1c"; transcript_id "HERVH_6q14.1c"; locus "HERVH_6q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0565"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "335"; repStart "-1"; ### HERVH_6q14.1d ### chr6 rmsk gene 80509796 80515803 . - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0566"; model_cov "5647"; model_pct "73.2"; chr6 rmsk exon 80509796 80510204 2523 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 80510205 80510582 2365 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr6 rmsk exon 80510580 80510785 1180 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 80510787 80512513 8365 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4537"; repStart "-1290"; chr6 rmsk exon 80512504 80512674 880 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr6 rmsk exon 80512647 80515390 14353 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 80515393 80515803 2718 - . gene_id "HERVH_6q14.1d"; transcript_id "HERVH_6q14.1d"; locus "HERVH_6q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0566"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_6q14.1e ### chr6 rmsk gene 80647676 80653384 . - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0567"; model_cov "5183"; model_pct "67.2"; chr6 rmsk exon 80647676 80647945 1677 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "1"; repStart "-132"; chr6 rmsk exon 80647946 80648322 2429 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 80648323 80648537 1431 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 80648539 80649722 7793 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3962"; repStart "-2564"; chr6 rmsk exon 80649716 80649961 1615 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3492"; repStart "-3977"; chr6 rmsk exon 80649952 80650097 816 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 80650077 80652980 9271 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 80652983 80653384 2611 - . gene_id "HERVH_6q14.1e"; transcript_id "HERVH_6q14.1e"; locus "HERVH_6q14.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0567"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_6q14.1l ### chr6 rmsk gene 80813145 80816045 . - . gene_id "ERVLE_6q14.1l"; transcript_id "ERVLE_6q14.1l"; locus "ERVLE_6q14.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1651"; model_cov "3005"; model_pct "53.0"; chr6 rmsk exon 80813145 80816045 12294 - . gene_id "ERVLE_6q14.1l"; transcript_id "ERVLE_6q14.1l"; locus "ERVLE_6q14.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1651"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "2661"; repStart "-1"; ### MER61_6q14.1d ### chr6 rmsk gene 81058231 81062145 . - . gene_id "MER61_6q14.1d"; transcript_id "MER61_6q14.1d"; locus "MER61_6q14.1d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0180"; model_cov "3985"; model_pct "76.4"; chr6 rmsk exon 81058231 81058608 2167 - . gene_id "MER61_6q14.1d"; transcript_id "MER61_6q14.1d"; locus "MER61_6q14.1d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0180"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr6 rmsk exon 81058609 81059160 20158 - . gene_id "MER61_6q14.1d"; transcript_id "MER61_6q14.1d"; locus "MER61_6q14.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0180"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4659"; repStart "0"; chr6 rmsk exon 81059517 81062145 20158 - . gene_id "MER61_6q14.1d"; transcript_id "MER61_6q14.1d"; locus "MER61_6q14.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0180"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "-392"; repStart "-2182"; ### MER61_6q14.1e ### chr6 rmsk gene 81062248 81064912 . - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0181"; model_cov "1064"; model_pct "20.4"; chr6 rmsk exon 81062248 81062323 20158 - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0181"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "2935"; repStart "-2182"; chr6 rmsk exon 81062637 81062755 1873 - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0181"; repClass "LTR"; repEnd "1477"; repFamily "ERV1"; repLeft "1361"; repStart "-3740"; chr6 rmsk exon 81062751 81063005 5013 - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0181"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "963"; repStart "-4004"; chr6 rmsk exon 81063497 81064128 5013 - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0181"; repClass "LTR"; repEnd "962"; repFamily "ERV1"; repLeft "364"; repStart "-4255"; chr6 rmsk exon 81064521 81064912 2320 - . gene_id "MER61_6q14.1e"; transcript_id "MER61_6q14.1e"; locus "MER61_6q14.1e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0181"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### HERVW_6q14.1 ### chr6 rmsk gene 81336946 81343927 . + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0134"; model_cov "6347"; model_pct "73.6"; chr6 rmsk exon 81336946 81337734 5884 + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0134"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 81337735 81343543 30165 + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0134"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr6 rmsk exon 81343537 81343575 268 + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0134"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr6 rmsk exon 81343566 81343857 2376 + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0134"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr6 rmsk exon 81343858 81343927 588 + . gene_id "HERVW_6q14.1"; transcript_id "HERVW_6q14.1"; locus "HERVW_6q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0134"; repClass "LTR"; repEnd "70"; repFamily "ERV1"; repLeft "-710"; repStart "1"; ### HERVH_6q14.1f ### chr6 rmsk gene 81343928 81351160 . - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0568"; model_cov "5156"; model_pct "66.8"; chr6 rmsk exon 81343928 81344359 2556 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 81344364 81344734 2405 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "7322"; repStart "-4"; chr6 rmsk exon 81344733 81344965 1349 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5587"; repStart "-1894"; chr6 rmsk exon 81346212 81346841 4167 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "5116"; repFamily "ERV1"; repLeft "4488"; repStart "-2597"; chr6 rmsk exon 81346844 81347343 3381 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 81347344 81347481 818 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "3140"; repStart "-4433"; chr6 rmsk exon 81347476 81349995 15756 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "483"; repStart "-4726"; chr6 rmsk exon 81349975 81350726 5201 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "1"; repStart "-6948"; chr6 rmsk exon 81350727 81351160 2632 - . gene_id "HERVH_6q14.1f"; transcript_id "HERVH_6q14.1f"; locus "HERVH_6q14.1f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0568"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6q14.1e ### chr6 rmsk gene 81475199 81480616 . - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1250"; model_cov "3731"; model_pct "71.4"; chr6 rmsk exon 81475199 81475374 449 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "88"; repStart "-177"; chr6 rmsk exon 81475432 81475755 804 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4909"; repStart "-3"; chr6 rmsk exon 81475836 81476485 1106 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "4121"; repStart "-455"; chr6 rmsk exon 81476484 81476587 746 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "4050"; repFamily "ERVL"; repLeft "3982"; repStart "-1176"; chr6 rmsk exon 81476958 81477200 746 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "3981"; repFamily "ERVL"; repLeft "3736"; repStart "-1245"; chr6 rmsk exon 81478164 81478323 760 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "3578"; repStart "-1486"; chr6 rmsk exon 81478377 81480616 3285 - . gene_id "ERV316A3_6q14.1e"; transcript_id "ERV316A3_6q14.1e"; locus "ERV316A3_6q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1250"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "310"; repStart "-2624"; ### HERVL_6q14.1e ### chr6 rmsk gene 81883049 81889558 . - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0612"; model_cov "4709"; model_pct "83.3"; chr6 rmsk exon 81883049 81883613 1748 - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0612"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr6 rmsk exon 81883614 81884369 26113 - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0612"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4938"; repStart "0"; chr6 rmsk exon 81884816 81887710 26113 - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0612"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "2006"; repStart "-717"; chr6 rmsk exon 81887941 81889003 7511 - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0612"; repClass "LTR"; repEnd "1063"; repFamily "ERVL"; repLeft "1"; repStart "-4591"; chr6 rmsk exon 81889007 81889558 1912 - . gene_id "HERVL_6q14.1e"; transcript_id "HERVL_6q14.1e"; locus "HERVL_6q14.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0612"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "1"; repStart "-7"; ### MER61_6q14.1f ### chr6 rmsk gene 82484093 82486142 . + . gene_id "MER61_6q14.1f"; transcript_id "MER61_6q14.1f"; locus "MER61_6q14.1f"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0182"; model_cov "761"; model_pct "14.6"; chr6 rmsk exon 82484093 82484574 2463 + . gene_id "MER61_6q14.1f"; transcript_id "MER61_6q14.1f"; locus "MER61_6q14.1f"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0182"; repClass "LTR"; repEnd "296"; repFamily "ERV1"; repLeft "-205"; repStart "-265"; chr6 rmsk exon 82485015 82486142 4329 + . gene_id "MER61_6q14.1f"; transcript_id "MER61_6q14.1f"; locus "MER61_6q14.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0182"; repClass "LTR"; repEnd "4752"; repFamily "ERV1"; repLeft "-465"; repStart "3991"; ### MER41_6q14.1e ### chr6 rmsk gene 82486253 82490066 . + . gene_id "MER41_6q14.1e"; transcript_id "MER41_6q14.1e"; locus "MER41_6q14.1e"; category "internal"; intModel "MER41-int"; locid "MER41-int_0222"; model_cov "4698"; model_pct "79.0"; chr6 rmsk exon 82486253 82486379 856 + . gene_id "MER41_6q14.1e"; transcript_id "MER41_6q14.1e"; locus "MER41_6q14.1e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0222"; repClass "LTR"; repEnd "967"; repFamily "ERV1"; repLeft "-4979"; repStart "841"; chr6 rmsk exon 82486381 82490066 14212 + . gene_id "MER41_6q14.1e"; transcript_id "MER41_6q14.1e"; locus "MER41_6q14.1e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0222"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "1373"; ### HERVL40_6q14.1 ### chr6 rmsk gene 82589524 82592655 . + . gene_id "HERVL40_6q14.1"; transcript_id "HERVL40_6q14.1"; locus "HERVL40_6q14.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0176"; model_cov "3006"; model_pct "54.4"; chr6 rmsk exon 82589524 82589783 669 + . gene_id "HERVL40_6q14.1"; transcript_id "HERVL40_6q14.1"; locus "HERVL40_6q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0176"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-5136"; repStart "120"; chr6 rmsk exon 82590022 82592655 5154 + . gene_id "HERVL40_6q14.1"; transcript_id "HERVL40_6q14.1"; locus "HERVL40_6q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0176"; repClass "LTR"; repEnd "3298"; repFamily "ERVL"; repLeft "-2232"; repStart "566"; ### ERVLB4_6q14.1d ### chr6 rmsk gene 82859393 82863077 . + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0719"; model_cov "3035"; model_pct "53.1"; chr6 rmsk exon 82859393 82859936 1630 + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0719"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "-3112"; repStart "2042"; chr6 rmsk exon 82860795 82861096 1630 + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0719"; repClass "LTR"; repEnd "3251"; repFamily "ERVL"; repLeft "-2463"; repStart "2937"; chr6 rmsk exon 82861099 82861894 966 + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0719"; repClass "LTR"; repEnd "3881"; repFamily "ERVL"; repLeft "-1833"; repStart "2954"; chr6 rmsk exon 82861958 82862848 814 + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0719"; repClass "LTR"; repEnd "4998"; repFamily "ERVL"; repLeft "-716"; repStart "3963"; chr6 rmsk exon 82862890 82863077 325 + . gene_id "ERVLB4_6q14.1d"; transcript_id "ERVLB4_6q14.1d"; locus "ERVLB4_6q14.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0719"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-516"; repStart "4999"; ### HERVL_6q14.1f ### chr6 rmsk gene 83010538 83017105 . - . gene_id "HERVL_6q14.1f"; transcript_id "HERVL_6q14.1f"; locus "HERVL_6q14.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0613"; model_cov "5653"; model_pct "100.0"; chr6 rmsk exon 83010538 83010974 3044 - . gene_id "HERVL_6q14.1f"; transcript_id "HERVL_6q14.1f"; locus "HERVL_6q14.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0613"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 83010975 83016556 41434 - . gene_id "HERVL_6q14.1f"; transcript_id "HERVL_6q14.1f"; locus "HERVL_6q14.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0613"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 83016700 83017105 2835 - . gene_id "HERVL_6q14.1f"; transcript_id "HERVL_6q14.1f"; locus "HERVL_6q14.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0613"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "1"; repStart "-47"; ### ERVLB4_6q14.1e ### chr6 rmsk gene 83024412 83025187 . - . gene_id "ERVLB4_6q14.1e"; transcript_id "ERVLB4_6q14.1e"; locus "ERVLB4_6q14.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0720"; model_cov "785"; model_pct "13.7"; chr6 rmsk exon 83024412 83025187 4086 - . gene_id "ERVLB4_6q14.1e"; transcript_id "ERVLB4_6q14.1e"; locus "ERVLB4_6q14.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0720"; repClass "LTR"; repEnd "2267"; repFamily "ERVL"; repLeft "1482"; repStart "-3447"; ### ERVLE_6q14.1m ### chr6 rmsk gene 83199292 83202847 . - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1655"; model_cov "2359"; model_pct "41.6"; chr6 rmsk exon 83199292 83199493 1405 - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1655"; repClass "LTR"; repEnd "3135"; repFamily "ERVL"; repLeft "2909"; repStart "-2532"; chr6 rmsk exon 83199848 83200381 1405 - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1655"; repClass "LTR"; repEnd "2908"; repFamily "ERVL"; repLeft "2348"; repStart "-2759"; chr6 rmsk exon 83200678 83200876 1405 - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1655"; repClass "LTR"; repEnd "2347"; repFamily "ERVL"; repLeft "2091"; repStart "-3320"; chr6 rmsk exon 83201382 83202327 1480 - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1655"; repClass "LTR"; repEnd "1569"; repFamily "ERVL"; repLeft "627"; repStart "-4098"; chr6 rmsk exon 83202451 83202847 474 - . gene_id "ERVLE_6q14.1m"; transcript_id "ERVLE_6q14.1m"; locus "ERVLE_6q14.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1655"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "195"; repStart "-5097"; ### ERV316A3_6q14.2 ### chr6 rmsk gene 83310141 83312525 . + . gene_id "ERV316A3_6q14.2"; transcript_id "ERV316A3_6q14.2"; locus "ERV316A3_6q14.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1252"; model_cov "1987"; model_pct "38.0"; chr6 rmsk exon 83310141 83310500 1327 + . gene_id "ERV316A3_6q14.2"; transcript_id "ERV316A3_6q14.2"; locus "ERV316A3_6q14.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1252"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "91"; chr6 rmsk exon 83310608 83312525 3956 + . gene_id "ERV316A3_6q14.2"; transcript_id "ERV316A3_6q14.2"; locus "ERV316A3_6q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1252"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "-3114"; repStart "125"; ### HERVL_6q14.2 ### chr6 rmsk gene 83357517 83364446 . + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0614"; model_cov "5734"; model_pct "100.0"; chr6 rmsk exon 83357517 83357935 3335 + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0614"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr6 rmsk exon 83357975 83358014 3335 + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0614"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; chr6 rmsk exon 83358054 83358868 6534 + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0614"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "-4839"; repStart "1"; chr6 rmsk exon 83359227 83364004 32036 + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0614"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "734"; chr6 rmsk exon 83364005 83364446 3465 + . gene_id "HERVL_6q14.2"; transcript_id "HERVL_6q14.2"; locus "HERVL_6q14.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0614"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_6q14.2 ### chr6 rmsk gene 83401633 83403265 . + . gene_id "ERVLB4_6q14.2"; transcript_id "ERVLB4_6q14.2"; locus "ERVLB4_6q14.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0721"; model_cov "1630"; model_pct "28.5"; chr6 rmsk exon 83401633 83403265 9855 + . gene_id "ERVLB4_6q14.2"; transcript_id "ERVLB4_6q14.2"; locus "ERVLB4_6q14.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0721"; repClass "LTR"; repEnd "5692"; repFamily "ERVL"; repLeft "-22"; repStart "4062"; ### HERVW_6q14.2 ### chr6 rmsk gene 83443760 83450390 . + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0135"; model_cov "5888"; model_pct "68.3"; chr6 rmsk exon 83443760 83444264 3393 + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0135"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr6 rmsk exon 83444265 83446210 14382 + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0135"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "-6616"; repStart "1"; chr6 rmsk exon 83446201 83449763 27811 + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0135"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2431"; chr6 rmsk exon 83449786 83450076 2174 + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0135"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr6 rmsk exon 83450077 83450390 2334 + . gene_id "HERVW_6q14.2"; transcript_id "HERVW_6q14.2"; locus "HERVW_6q14.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0135"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_6q14.2 ### chr6 rmsk gene 83654450 83656661 . + . gene_id "ERVLE_6q14.2"; transcript_id "ERVLE_6q14.2"; locus "ERVLE_6q14.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1656"; model_cov "2540"; model_pct "44.8"; chr6 rmsk exon 83654450 83655022 977 + . gene_id "ERVLE_6q14.2"; transcript_id "ERVLE_6q14.2"; locus "ERVLE_6q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1656"; repClass "LTR"; repEnd "2612"; repFamily "ERVL"; repLeft "-3055"; repStart "1923"; chr6 rmsk exon 83655031 83656661 2518 + . gene_id "ERVLE_6q14.2"; transcript_id "ERVLE_6q14.2"; locus "ERVLE_6q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1656"; repClass "LTR"; repEnd "4411"; repFamily "ERVL"; repLeft "-1256"; repStart "2560"; ### MER4_6q14.2 ### chr6 rmsk gene 83969147 83975641 . - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0329"; model_cov "5509"; model_pct "83.5"; chr6 rmsk exon 83969147 83969599 3202 - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0329"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 83969608 83970911 6249 - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0329"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5304"; repStart "-2"; chr6 rmsk exon 83971540 83971657 8657 - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0329"; repClass "LTR"; repEnd "5263"; repFamily "ERV1"; repLeft "5151"; repStart "-1335"; chr6 rmsk exon 83971957 83974320 8657 - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0329"; repClass "LTR"; repEnd "5150"; repFamily "ERV1"; repLeft "1616"; repStart "-1448"; chr6 rmsk exon 83975089 83975641 1448 - . gene_id "MER4_6q14.2"; transcript_id "MER4_6q14.2"; locus "MER4_6q14.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0329"; repClass "LTR"; repEnd "1263"; repFamily "ERV1"; repLeft "692"; repStart "-5335"; ### ERVL_6q14.2 ### chr6 rmsk gene 84105602 84107924 . - . gene_id "ERVL_6q14.2"; transcript_id "ERVL_6q14.2"; locus "ERVL_6q14.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0168"; model_cov "2345"; model_pct "40.7"; chr6 rmsk exon 84105602 84106578 6069 - . gene_id "ERVL_6q14.2"; transcript_id "ERVL_6q14.2"; locus "ERVL_6q14.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0168"; repClass "LTR"; repEnd "5156"; repFamily "ERVL"; repLeft "4175"; repStart "-601"; chr6 rmsk exon 84106577 84107664 6556 - . gene_id "ERVL_6q14.2"; transcript_id "ERVL_6q14.2"; locus "ERVL_6q14.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0168"; repClass "LTR"; repEnd "3715"; repFamily "ERVL"; repLeft "2619"; repStart "-2042"; chr6 rmsk exon 84107659 84107924 1613 - . gene_id "ERVL_6q14.2"; transcript_id "ERVL_6q14.2"; locus "ERVL_6q14.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0168"; repClass "LTR"; repEnd "2707"; repFamily "ERVL"; repLeft "2439"; repStart "-3050"; ### MER34B_6q14.2 ### chr6 rmsk gene 84142173 84146359 . + . gene_id "MER34B_6q14.2"; transcript_id "MER34B_6q14.2"; locus "MER34B_6q14.2"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0120"; model_cov "4066"; model_pct "75.9"; chr6 rmsk exon 84142173 84146179 12910 + . gene_id "MER34B_6q14.2"; transcript_id "MER34B_6q14.2"; locus "MER34B_6q14.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0120"; repClass "LTR"; repEnd "5299"; repFamily "ERV1"; repLeft "-57"; repStart "1233"; chr6 rmsk exon 84146190 84146359 728 + . gene_id "MER34B_6q14.2"; transcript_id "MER34B_6q14.2"; locus "MER34B_6q14.2"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0120"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "0"; repStart "384"; ### ERVLE_6q14.3a ### chr6 rmsk gene 84233268 84235206 . + . gene_id "ERVLE_6q14.3a"; transcript_id "ERVLE_6q14.3a"; locus "ERVLE_6q14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1657"; model_cov "1753"; model_pct "30.9"; chr6 rmsk exon 84233268 84233429 280 + . gene_id "ERVLE_6q14.3a"; transcript_id "ERVLE_6q14.3a"; locus "ERVLE_6q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1657"; repClass "LTR"; repEnd "865"; repFamily "ERVL"; repLeft "-4802"; repStart "690"; chr6 rmsk exon 84233598 84234772 1841 + . gene_id "ERVLE_6q14.3a"; transcript_id "ERVLE_6q14.3a"; locus "ERVLE_6q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1657"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "-4066"; repStart "395"; chr6 rmsk exon 84234802 84235206 1841 + . gene_id "ERVLE_6q14.3a"; transcript_id "ERVLE_6q14.3a"; locus "ERVLE_6q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1657"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "-3693"; repStart "1602"; ### ERV316A3_6q14.3a ### chr6 rmsk gene 84235212 84236368 . + . gene_id "ERV316A3_6q14.3a"; transcript_id "ERV316A3_6q14.3a"; locus "ERV316A3_6q14.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1253"; model_cov "1022"; model_pct "19.6"; chr6 rmsk exon 84235212 84235604 877 + . gene_id "ERV316A3_6q14.3a"; transcript_id "ERV316A3_6q14.3a"; locus "ERV316A3_6q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1253"; repClass "LTR"; repEnd "1807"; repFamily "ERVL"; repLeft "-3419"; repStart "1407"; chr6 rmsk exon 84235607 84235934 987 + . gene_id "ERV316A3_6q14.3a"; transcript_id "ERV316A3_6q14.3a"; locus "ERV316A3_6q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1253"; repClass "LTR"; repEnd "2357"; repFamily "ERVL"; repLeft "-2869"; repStart "2023"; chr6 rmsk exon 84236086 84236368 640 + . gene_id "ERV316A3_6q14.3a"; transcript_id "ERV316A3_6q14.3a"; locus "ERV316A3_6q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1253"; repClass "LTR"; repEnd "2842"; repFamily "ERVL"; repLeft "-2384"; repStart "2554"; ### ERV316A3_6q14.3b ### chr6 rmsk gene 84240138 84242945 . + . gene_id "ERV316A3_6q14.3b"; transcript_id "ERV316A3_6q14.3b"; locus "ERV316A3_6q14.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1254"; model_cov "1914"; model_pct "36.6"; chr6 rmsk exon 84240138 84240714 2777 + . gene_id "ERV316A3_6q14.3b"; transcript_id "ERV316A3_6q14.3b"; locus "ERV316A3_6q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1254"; repClass "LTR"; repEnd "3772"; repFamily "ERVL"; repLeft "-1454"; repStart "3206"; chr6 rmsk exon 84241055 84242358 2777 + . gene_id "ERV316A3_6q14.3b"; transcript_id "ERV316A3_6q14.3b"; locus "ERV316A3_6q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1254"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "3773"; chr6 rmsk exon 84242456 84242945 709 + . gene_id "ERV316A3_6q14.3b"; transcript_id "ERV316A3_6q14.3b"; locus "ERV316A3_6q14.3b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1254"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-39"; repStart "1"; ### ERVLE_6q14.3b ### chr6 rmsk gene 84574439 84576675 . + . gene_id "ERVLE_6q14.3b"; transcript_id "ERVLE_6q14.3b"; locus "ERVLE_6q14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1658"; model_cov "2151"; model_pct "38.0"; chr6 rmsk exon 84574439 84575024 1064 + . gene_id "ERVLE_6q14.3b"; transcript_id "ERVLE_6q14.3b"; locus "ERVLE_6q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1658"; repClass "LTR"; repEnd "788"; repFamily "ERVL"; repLeft "-4879"; repStart "195"; chr6 rmsk exon 84575178 84576675 2334 + . gene_id "ERVLE_6q14.3b"; transcript_id "ERVLE_6q14.3b"; locus "ERVLE_6q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1658"; repClass "LTR"; repEnd "2735"; repFamily "ERVL"; repLeft "-2932"; repStart "1177"; ### HERVW_6q14.3a ### chr6 rmsk gene 84711702 84718373 . - . gene_id "HERVW_6q14.3a"; transcript_id "HERVW_6q14.3a"; locus "HERVW_6q14.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0136"; model_cov "5941"; model_pct "68.9"; chr6 rmsk exon 84711702 84712464 5015 - . gene_id "HERVW_6q14.3a"; transcript_id "HERVW_6q14.3a"; locus "HERVW_6q14.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0136"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 84712465 84712756 2242 - . gene_id "HERVW_6q14.3a"; transcript_id "HERVW_6q14.3a"; locus "HERVW_6q14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0136"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr6 rmsk exon 84712747 84712785 304 - . gene_id "HERVW_6q14.3a"; transcript_id "HERVW_6q14.3a"; locus "HERVW_6q14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0136"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr6 rmsk exon 84712782 84718373 42988 - . gene_id "HERVW_6q14.3a"; transcript_id "HERVW_6q14.3a"; locus "HERVW_6q14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0136"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "1535"; repStart "-1479"; ### HERVIP10FH_6q14.3 ### chr6 rmsk gene 84718364 84720411 . - . gene_id "HERVIP10FH_6q14.3"; transcript_id "HERVIP10FH_6q14.3"; locus "HERVIP10FH_6q14.3"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0066"; model_cov "1803"; model_pct "35.3"; chr6 rmsk exon 84718364 84719411 6595 - . gene_id "HERVIP10FH_6q14.3"; transcript_id "HERVIP10FH_6q14.3"; locus "HERVIP10FH_6q14.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0066"; repClass "LTR"; repEnd "1937"; repFamily "ERV1"; repLeft "839"; repStart "-3165"; chr6 rmsk exon 84719699 84720411 4697 - . gene_id "HERVIP10FH_6q14.3"; transcript_id "HERVIP10FH_6q14.3"; locus "HERVIP10FH_6q14.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0066"; repClass "LTR"; repEnd "-2817"; repFamily "ERV1"; repLeft "-3522"; repStart "-7919"; ### ERVLE_6q14.3c ### chr6 rmsk gene 84792164 84795163 . + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1659"; model_cov "2350"; model_pct "41.5"; chr6 rmsk exon 84792164 84792404 252 + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1659"; repClass "LTR"; repEnd "1277"; repFamily "ERVL"; repLeft "-4390"; repStart "1033"; chr6 rmsk exon 84792428 84793767 1011 + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1659"; repClass "LTR"; repEnd "2059"; repFamily "ERVL"; repLeft "-3608"; repStart "589"; chr6 rmsk exon 84793809 84794029 621 + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1659"; repClass "LTR"; repEnd "2367"; repFamily "ERVL"; repLeft "-3300"; repStart "2146"; chr6 rmsk exon 84794076 84794233 621 + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1659"; repClass "LTR"; repEnd "2551"; repFamily "ERVL"; repLeft "-3116"; repStart "2368"; chr6 rmsk exon 84794938 84795163 327 + . gene_id "ERVLE_6q14.3c"; transcript_id "ERVLE_6q14.3c"; locus "ERVLE_6q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1659"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-492"; repStart "4943"; ### ERV316A3_6q14.3c ### chr6 rmsk gene 84799340 84801555 . - . gene_id "ERV316A3_6q14.3c"; transcript_id "ERV316A3_6q14.3c"; locus "ERV316A3_6q14.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1255"; model_cov "1645"; model_pct "31.5"; chr6 rmsk exon 84799340 84800660 2735 - . gene_id "ERV316A3_6q14.3c"; transcript_id "ERV316A3_6q14.3c"; locus "ERV316A3_6q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1255"; repClass "LTR"; repEnd "2235"; repFamily "ERVL"; repLeft "902"; repStart "-2991"; chr6 rmsk exon 84801261 84801555 965 - . gene_id "ERV316A3_6q14.3c"; transcript_id "ERV316A3_6q14.3c"; locus "ERV316A3_6q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1255"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "261"; repStart "-4653"; ### HERVIP10F_6q14.3 ### chr6 rmsk gene 84962838 84965541 . - . gene_id "HERVIP10F_6q14.3"; transcript_id "HERVIP10F_6q14.3"; locus "HERVIP10F_6q14.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0045"; model_cov "2230"; model_pct "28.8"; chr6 rmsk exon 84962838 84963362 3759 - . gene_id "HERVIP10F_6q14.3"; transcript_id "HERVIP10F_6q14.3"; locus "HERVIP10F_6q14.3"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0045"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 84963364 84965541 7406 - . gene_id "HERVIP10F_6q14.3"; transcript_id "HERVIP10F_6q14.3"; locus "HERVIP10F_6q14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0045"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "5505"; repStart "-2"; ### HERVI_6q14.3 ### chr6 rmsk gene 84965610 84968599 . - . gene_id "HERVI_6q14.3"; transcript_id "HERVI_6q14.3"; locus "HERVI_6q14.3"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0011"; model_cov "1544"; model_pct "19.8"; chr6 rmsk exon 84965610 84965763 767 - . gene_id "HERVI_6q14.3"; transcript_id "HERVI_6q14.3"; locus "HERVI_6q14.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0011"; repClass "LTR"; repEnd "4862"; repFamily "ERV1"; repLeft "4710"; repStart "-2923"; chr6 rmsk exon 84965783 84966356 1618 - . gene_id "HERVI_6q14.3"; transcript_id "HERVI_6q14.3"; locus "HERVI_6q14.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0011"; repClass "LTR"; repEnd "4639"; repFamily "ERV1"; repLeft "4224"; repStart "-3146"; chr6 rmsk exon 84967057 84968069 2867 - . gene_id "HERVI_6q14.3"; transcript_id "HERVI_6q14.3"; locus "HERVI_6q14.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0011"; repClass "LTR"; repEnd "1003"; repFamily "ERV1"; repLeft "26"; repStart "-6782"; chr6 rmsk exon 84968095 84968599 3480 - . gene_id "HERVI_6q14.3"; transcript_id "HERVI_6q14.3"; locus "HERVI_6q14.3"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0011"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_6q14.3a ### chr6 rmsk gene 85092945 85096349 . + . gene_id "HERV9_6q14.3a"; transcript_id "HERV9_6q14.3a"; locus "HERV9_6q14.3a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0071"; model_cov "2972"; model_pct "35.2"; chr6 rmsk exon 85092945 85095905 22531 + . gene_id "HERV9_6q14.3a"; transcript_id "HERV9_6q14.3a"; locus "HERV9_6q14.3a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0071"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "5464"; chr6 rmsk exon 85095906 85096349 2689 + . gene_id "HERV9_6q14.3a"; transcript_id "HERV9_6q14.3a"; locus "HERV9_6q14.3a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0071"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_6q14.3a ### chr6 rmsk gene 85721586 85730983 . - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0332"; model_cov "7135"; model_pct "100.0"; chr6 rmsk exon 85721586 85722041 2934 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0332"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 85722050 85723134 17506 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5520"; repStart "0"; chr6 rmsk exon 85723166 85724263 17506 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "5519"; repFamily "ERV1"; repLeft "4444"; repStart "-1079"; chr6 rmsk exon 85724556 85724583 17506 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "4443"; repFamily "ERV1"; repLeft "4426"; repStart "-2155"; chr6 rmsk exon 85724914 85725840 17506 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "4425"; repFamily "ERV1"; repLeft "3472"; repStart "-2173"; chr6 rmsk exon 85726134 85727224 17506 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "3471"; repFamily "ERV1"; repLeft "1320"; repStart "-3127"; chr6 rmsk exon 85727534 85728279 4510 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "2238"; repFamily "ERV1"; repLeft "1509"; repStart "-4360"; chr6 rmsk exon 85728592 85728959 4510 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "1508"; repFamily "ERV1"; repLeft "1111"; repStart "-5090"; chr6 rmsk exon 85730145 85730197 358 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "-670"; repFamily "ERV1"; repLeft "-722"; repStart "-7268"; chr6 rmsk exon 85730185 85730793 2574 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0332"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "3"; repStart "-5912"; chr6 rmsk exon 85730799 85730983 1050 - . gene_id "MER4_6q14.3a"; transcript_id "MER4_6q14.3a"; locus "MER4_6q14.3a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0332"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "286"; repStart "0"; ### MER34B_6q14.3 ### chr6 rmsk gene 85747738 85750149 . - . gene_id "MER34B_6q14.3"; transcript_id "MER34B_6q14.3"; locus "MER34B_6q14.3"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0122"; model_cov "1289"; model_pct "24.1"; chr6 rmsk exon 85747738 85747965 1225 - . gene_id "MER34B_6q14.3"; transcript_id "MER34B_6q14.3"; locus "MER34B_6q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0122"; repClass "LTR"; repEnd "4700"; repFamily "ERV1"; repLeft "4456"; repStart "-656"; chr6 rmsk exon 85747960 85748248 1339 - . gene_id "MER34B_6q14.3"; transcript_id "MER34B_6q14.3"; locus "MER34B_6q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0122"; repClass "LTR"; repEnd "4178"; repFamily "ERV1"; repLeft "3882"; repStart "-1178"; chr6 rmsk exon 85748783 85749046 1582 - . gene_id "MER34B_6q14.3"; transcript_id "MER34B_6q14.3"; locus "MER34B_6q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0122"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "2974"; repStart "-2070"; chr6 rmsk exon 85749683 85750149 1582 - . gene_id "MER34B_6q14.3"; transcript_id "MER34B_6q14.3"; locus "MER34B_6q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0122"; repClass "LTR"; repEnd "2973"; repFamily "ERV1"; repLeft "2536"; repStart "-2383"; ### HERV3_6q14.3a ### chr6 rmsk gene 85854583 85857237 . - . gene_id "HERV3_6q14.3a"; transcript_id "HERV3_6q14.3a"; locus "HERV3_6q14.3a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0026"; model_cov "2041"; model_pct "24.2"; chr6 rmsk exon 85854583 85855184 3239 - . gene_id "HERV3_6q14.3a"; transcript_id "HERV3_6q14.3a"; locus "HERV3_6q14.3a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0026"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 85855187 85857237 9190 - . gene_id "HERV3_6q14.3a"; transcript_id "HERV3_6q14.3a"; locus "HERV3_6q14.3a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0026"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "6385"; repStart "0"; ### HERV3_6q14.3b ### chr6 rmsk gene 85863519 85867947 . - . gene_id "HERV3_6q14.3b"; transcript_id "HERV3_6q14.3b"; locus "HERV3_6q14.3b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0027"; model_cov "3720"; model_pct "44.1"; chr6 rmsk exon 85863519 85864646 5910 - . gene_id "HERV3_6q14.3b"; transcript_id "HERV3_6q14.3b"; locus "HERV3_6q14.3b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0027"; repClass "LTR"; repEnd "6292"; repFamily "ERV1"; repLeft "5157"; repStart "-2134"; chr6 rmsk exon 85864645 85864760 631 - . gene_id "HERV3_6q14.3b"; transcript_id "HERV3_6q14.3b"; locus "HERV3_6q14.3b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0027"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3707"; repStart "-4602"; chr6 rmsk exon 85864766 85867347 3953 - . gene_id "HERV3_6q14.3b"; transcript_id "HERV3_6q14.3b"; locus "HERV3_6q14.3b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0027"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "1"; repStart "-5957"; chr6 rmsk exon 85867354 85867947 2770 - . gene_id "HERV3_6q14.3b"; transcript_id "HERV3_6q14.3b"; locus "HERV3_6q14.3b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0027"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "1"; repStart "-9"; ### MER4_6q14.3b ### chr6 rmsk gene 85897132 85899666 . + . gene_id "MER4_6q14.3b"; transcript_id "MER4_6q14.3b"; locus "MER4_6q14.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0333"; model_cov "2163"; model_pct "32.8"; chr6 rmsk exon 85897132 85899200 12011 + . gene_id "MER4_6q14.3b"; transcript_id "MER4_6q14.3b"; locus "MER4_6q14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0333"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4433"; chr6 rmsk exon 85899216 85899666 2802 + . gene_id "MER4_6q14.3b"; transcript_id "MER4_6q14.3b"; locus "MER4_6q14.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0333"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q14.3d ### chr6 rmsk gene 85915038 85921375 . + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1660"; model_cov "2788"; model_pct "49.2"; chr6 rmsk exon 85915038 85915472 820 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "-58"; repStart "200"; chr6 rmsk exon 85915496 85916685 8130 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "1220"; repFamily "ERVL"; repLeft "-4447"; repStart "1"; chr6 rmsk exon 85916992 85918134 8130 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "2424"; repFamily "ERVL"; repLeft "-3243"; repStart "1221"; chr6 rmsk exon 85919721 85919833 371 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "2531"; repFamily "ERVL"; repLeft "-3136"; repStart "2420"; chr6 rmsk exon 85920473 85920705 902 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "5661"; repFamily "ERVL"; repLeft "-6"; repStart "5406"; chr6 rmsk exon 85920712 85921375 1786 + . gene_id "ERVLE_6q14.3d"; transcript_id "ERVLE_6q14.3d"; locus "ERVLE_6q14.3d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1660"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "2"; ### HERVW_6q14.3b ### chr6 rmsk gene 85973857 85975559 . - . gene_id "HERVW_6q14.3b"; transcript_id "HERVW_6q14.3b"; locus "HERVW_6q14.3b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0138"; model_cov "1160"; model_pct "13.4"; chr6 rmsk exon 85973857 85974513 2766 - . gene_id "HERVW_6q14.3b"; transcript_id "HERVW_6q14.3b"; locus "HERVW_6q14.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0138"; repClass "LTR"; repEnd "2367"; repFamily "ERV1"; repLeft "1710"; repStart "-6259"; chr6 rmsk exon 85974686 85974750 263 - . gene_id "HERVW_6q14.3b"; transcript_id "HERVW_6q14.3b"; locus "HERVW_6q14.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0138"; repClass "LTR"; repEnd "1316"; repFamily "ERV1"; repLeft "1252"; repStart "-7310"; chr6 rmsk exon 85975113 85975559 1435 - . gene_id "HERVW_6q14.3b"; transcript_id "HERVW_6q14.3b"; locus "HERVW_6q14.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0138"; repClass "LTR"; repEnd "456"; repFamily "ERV1"; repLeft "17"; repStart "-8170"; ### HUERSP2_6q14.3 ### chr6 rmsk gene 86147971 86152987 . - . gene_id "HUERSP2_6q14.3"; transcript_id "HUERSP2_6q14.3"; locus "HUERSP2_6q14.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0061"; model_cov "3087"; model_pct "100.0"; chr6 rmsk exon 86147971 86148168 4971 - . gene_id "HUERSP2_6q14.3"; transcript_id "HUERSP2_6q14.3"; locus "HUERSP2_6q14.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0061"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "652"; repStart "0"; chr6 rmsk exon 86148494 86149143 4971 - . gene_id "HUERSP2_6q14.3"; transcript_id "HUERSP2_6q14.3"; locus "HUERSP2_6q14.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0061"; repClass "LTR"; repEnd "651"; repFamily "ERV1"; repLeft "2"; repStart "-186"; chr6 rmsk exon 86149144 86152129 16087 - . gene_id "HUERSP2_6q14.3"; transcript_id "HUERSP2_6q14.3"; locus "HUERSP2_6q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0061"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 86152172 86152987 4446 - . gene_id "HUERSP2_6q14.3"; transcript_id "HUERSP2_6q14.3"; locus "HUERSP2_6q14.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0061"; repClass "LTR"; repEnd "829"; repFamily "ERV1"; repLeft "1"; repStart "-8"; ### ERVLB4_6q14.3 ### chr6 rmsk gene 86205907 86209148 . - . gene_id "ERVLB4_6q14.3"; transcript_id "ERVLB4_6q14.3"; locus "ERVLB4_6q14.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0723"; model_cov "2171"; model_pct "38.0"; chr6 rmsk exon 86205907 86205971 516 - . gene_id "ERVLB4_6q14.3"; transcript_id "ERVLB4_6q14.3"; locus "ERVLB4_6q14.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0723"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "2103"; repStart "-3547"; chr6 rmsk exon 86206418 86208539 11031 - . gene_id "ERVLB4_6q14.3"; transcript_id "ERVLB4_6q14.3"; locus "ERVLB4_6q14.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0723"; repClass "LTR"; repEnd "2109"; repFamily "ERVL"; repLeft "2"; repStart "-3605"; chr6 rmsk exon 86208541 86208603 1024 - . gene_id "ERVLB4_6q14.3"; transcript_id "ERVLB4_6q14.3"; locus "ERVLB4_6q14.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0723"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "493"; repStart "0"; chr6 rmsk exon 86208774 86209148 1834 - . gene_id "ERVLB4_6q14.3"; transcript_id "ERVLB4_6q14.3"; locus "ERVLB4_6q14.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0723"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "1"; repStart "-188"; ### ERVLE_6q14.3e ### chr6 rmsk gene 86411453 86413549 . + . gene_id "ERVLE_6q14.3e"; transcript_id "ERVLE_6q14.3e"; locus "ERVLE_6q14.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1661"; model_cov "2114"; model_pct "37.3"; chr6 rmsk exon 86411453 86413220 2263 + . gene_id "ERVLE_6q14.3e"; transcript_id "ERVLE_6q14.3e"; locus "ERVLE_6q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1661"; repClass "LTR"; repEnd "4114"; repFamily "ERVL"; repLeft "-1553"; repStart "2274"; chr6 rmsk exon 86413293 86413549 555 + . gene_id "ERVLE_6q14.3e"; transcript_id "ERVLE_6q14.3e"; locus "ERVLE_6q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1661"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "-425"; repStart "4968"; ### HERVS71_6q14.3 ### chr6 rmsk gene 86473027 86481664 . + . gene_id "HERVS71_6q14.3"; transcript_id "HERVS71_6q14.3"; locus "HERVS71_6q14.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0018"; model_cov "7613"; model_pct "84.8"; chr6 rmsk exon 86473027 86473550 3828 + . gene_id "HERVS71_6q14.3"; transcript_id "HERVS71_6q14.3"; locus "HERVS71_6q14.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0018"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 86473554 86476967 23633 + . gene_id "HERVS71_6q14.3"; transcript_id "HERVS71_6q14.3"; locus "HERVS71_6q14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0018"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "-5534"; repStart "4"; chr6 rmsk exon 86476962 86481136 29612 + . gene_id "HERVS71_6q14.3"; transcript_id "HERVS71_6q14.3"; locus "HERVS71_6q14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0018"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "4736"; chr6 rmsk exon 86481137 86481664 3762 + . gene_id "HERVS71_6q14.3"; transcript_id "HERVS71_6q14.3"; locus "HERVS71_6q14.3"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0018"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6q14.3d ### chr6 rmsk gene 86487105 86490539 . + . gene_id "ERV316A3_6q14.3d"; transcript_id "ERV316A3_6q14.3d"; locus "ERV316A3_6q14.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1257"; model_cov "829"; model_pct "15.9"; chr6 rmsk exon 86487105 86487438 1038 + . gene_id "ERV316A3_6q14.3d"; transcript_id "ERV316A3_6q14.3d"; locus "ERV316A3_6q14.3d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1257"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "-72"; repStart "1"; chr6 rmsk exon 86487439 86488020 827 + . gene_id "ERV316A3_6q14.3d"; transcript_id "ERV316A3_6q14.3d"; locus "ERV316A3_6q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1257"; repClass "LTR"; repEnd "3550"; repFamily "ERVL"; repLeft "-1676"; repStart "2998"; chr6 rmsk exon 86490006 86490265 839 + . gene_id "ERV316A3_6q14.3d"; transcript_id "ERV316A3_6q14.3d"; locus "ERV316A3_6q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1257"; repClass "LTR"; repEnd "4011"; repFamily "ERVL"; repLeft "-1215"; repStart "3734"; chr6 rmsk exon 86490370 86490539 383 + . gene_id "ERV316A3_6q14.3d"; transcript_id "ERV316A3_6q14.3d"; locus "ERV316A3_6q14.3d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1257"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-31"; repStart "221"; ### HML5_6q14.3 ### chr6 rmsk gene 86498313 86502807 . - . gene_id "HML5_6q14.3"; transcript_id "HML5_6q14.3"; locus "HML5_6q14.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0052"; model_cov "4514"; model_pct "66.0"; chr6 rmsk exon 86498313 86500000 9943 - . gene_id "HML5_6q14.3"; transcript_id "HML5_6q14.3"; locus "HML5_6q14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0052"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "3180"; repStart "-1502"; chr6 rmsk exon 86500001 86501453 10449 - . gene_id "HML5_6q14.3"; transcript_id "HML5_6q14.3"; locus "HML5_6q14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0052"; repClass "LTR"; repEnd "3782"; repFamily "ERVK"; repLeft "2325"; repStart "-3055"; chr6 rmsk exon 86501447 86502337 5728 - . gene_id "HML5_6q14.3"; transcript_id "HML5_6q14.3"; locus "HML5_6q14.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0052"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "3"; repStart "-5932"; chr6 rmsk exon 86502340 86502807 1994 - . gene_id "HML5_6q14.3"; transcript_id "HML5_6q14.3"; locus "HML5_6q14.3"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0052"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6q14.3f ### chr6 rmsk gene 86531849 86532707 . - . gene_id "ERVLE_6q14.3f"; transcript_id "ERVLE_6q14.3f"; locus "ERVLE_6q14.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1662"; model_cov "823"; model_pct "14.5"; chr6 rmsk exon 86531849 86532018 272 - . gene_id "ERVLE_6q14.3f"; transcript_id "ERVLE_6q14.3f"; locus "ERVLE_6q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1662"; repClass "LTR"; repEnd "5639"; repFamily "ERVL"; repLeft "5475"; repStart "-28"; chr6 rmsk exon 86532077 86532707 1584 - . gene_id "ERVLE_6q14.3f"; transcript_id "ERVLE_6q14.3f"; locus "ERVLE_6q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1662"; repClass "LTR"; repEnd "5370"; repFamily "ERVL"; repLeft "4711"; repStart "-297"; ### HERVH_6q14.3 ### chr6 rmsk gene 86598258 86603901 . - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0569"; model_cov "5114"; model_pct "66.3"; chr6 rmsk exon 86598258 86598650 2072 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chr6 rmsk exon 86598651 86599022 2312 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 86599025 86599238 1298 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "5600"; repStart "-1896"; chr6 rmsk exon 86599240 86599854 2906 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 86599857 86600709 5434 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr6 rmsk exon 86600689 86603491 14277 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 86603494 86603901 2203 - . gene_id "HERVH_6q14.3"; transcript_id "HERVH_6q14.3"; locus "HERVH_6q14.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0569"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; ### HERV9_6q14.3b ### chr6 rmsk gene 86671699 86681550 . - . gene_id "HERV9_6q14.3b"; transcript_id "HERV9_6q14.3b"; locus "HERV9_6q14.3b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0072"; model_cov "8435"; model_pct "100.0"; chr6 rmsk exon 86671699 86672531 4761 - . gene_id "HERV9_6q14.3b"; transcript_id "HERV9_6q14.3b"; locus "HERV9_6q14.3b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0072"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 86672532 86680823 57961 - . gene_id "HERV9_6q14.3b"; transcript_id "HERV9_6q14.3b"; locus "HERV9_6q14.3b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0072"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 86680824 86681550 5297 - . gene_id "HERV9_6q14.3b"; transcript_id "HERV9_6q14.3b"; locus "HERV9_6q14.3b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0072"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERV316A3_6q14.3e ### chr6 rmsk gene 86739089 86744439 . - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1258"; model_cov "3485"; model_pct "66.7"; chr6 rmsk exon 86739089 86739176 294 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "1"; repStart "-359"; chr6 rmsk exon 86739288 86740148 4924 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "5112"; repFamily "ERVL"; repLeft "4168"; repStart "-114"; chr6 rmsk exon 86740717 86741659 4924 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "4167"; repFamily "ERVL"; repLeft "3185"; repStart "-1059"; chr6 rmsk exon 86741653 86743025 3113 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "1681"; repFamily "ERVL"; repLeft "229"; repStart "-3545"; chr6 rmsk exon 86743958 86744061 262 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "231"; repStart "-4888"; chr6 rmsk exon 86744087 86744439 737 - . gene_id "ERV316A3_6q14.3e"; transcript_id "ERV316A3_6q14.3e"; locus "ERV316A3_6q14.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1258"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "25"; repStart "-40"; ### MER101_6q14.3 ### chr6 rmsk gene 87110512 87115797 . + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0185"; model_cov "3648"; model_pct "54.9"; chr6 rmsk exon 87110512 87110863 2407 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "2441"; repFamily "ERV1"; repLeft "-4198"; repStart "2248"; chr6 rmsk exon 87111179 87111486 2407 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "2750"; repFamily "ERV1"; repLeft "-3889"; repStart "2442"; chr6 rmsk exon 87111625 87112167 4451 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "3293"; repFamily "ERV1"; repLeft "-3346"; repStart "2761"; chr6 rmsk exon 87112490 87112902 4451 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "3710"; repFamily "ERV1"; repLeft "-2929"; repStart "3294"; chr6 rmsk exon 87113194 87113257 4451 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "3788"; repFamily "ERV1"; repLeft "-2851"; repStart "3711"; chr6 rmsk exon 87113245 87114736 3071 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-1237"; repStart "3913"; chr6 rmsk exon 87114747 87115346 2409 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0185"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6006"; chr6 rmsk exon 87115347 87115797 2548 + . gene_id "MER101_6q14.3"; transcript_id "MER101_6q14.3"; locus "MER101_6q14.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0185"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_6q15 ### chr6 rmsk gene 87478736 87480702 . - . gene_id "HERVIP10F_6q15"; transcript_id "HERVIP10F_6q15"; locus "HERVIP10F_6q15"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0046"; model_cov "1516"; model_pct "19.6"; chr6 rmsk exon 87478736 87479186 2840 - . gene_id "HERVIP10F_6q15"; transcript_id "HERVIP10F_6q15"; locus "HERVIP10F_6q15"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0046"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 87479191 87480702 9384 - . gene_id "HERVIP10F_6q15"; transcript_id "HERVIP10F_6q15"; locus "HERVIP10F_6q15"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0046"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "6217"; repStart "-4"; ### HERVIP10FH_6q15a ### chr6 rmsk gene 87480750 87484871 . - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0067"; model_cov "2867"; model_pct "56.2"; chr6 rmsk exon 87480750 87481133 14083 - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0067"; repClass "LTR"; repEnd "3127"; repFamily "ERV1"; repLeft "2742"; repStart "-1975"; chr6 rmsk exon 87481435 87483155 14083 - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0067"; repClass "LTR"; repEnd "2741"; repFamily "ERV1"; repLeft "1002"; repStart "-2361"; chr6 rmsk exon 87483227 87483550 14083 - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0067"; repClass "LTR"; repEnd "1001"; repFamily "ERV1"; repLeft "501"; repStart "-4101"; chr6 rmsk exon 87483705 87483947 444 - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0067"; repClass "LTR"; repEnd "-1945"; repFamily "ERV1"; repLeft "-2188"; repStart "-7047"; chr6 rmsk exon 87484318 87484871 3145 - . gene_id "HERVIP10FH_6q15a"; transcript_id "HERVIP10FH_6q15a"; locus "HERVIP10FH_6q15a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0067"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### ERVLE_6q15a ### chr6 rmsk gene 87780085 87783101 . + . gene_id "ERVLE_6q15a"; transcript_id "ERVLE_6q15a"; locus "ERVLE_6q15a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1664"; model_cov "2909"; model_pct "51.3"; chr6 rmsk exon 87780085 87781027 3187 + . gene_id "ERVLE_6q15a"; transcript_id "ERVLE_6q15a"; locus "ERVLE_6q15a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1664"; repClass "LTR"; repEnd "1067"; repFamily "ERVL"; repLeft "-4600"; repStart "1"; chr6 rmsk exon 87781315 87783101 3448 + . gene_id "ERVLE_6q15a"; transcript_id "ERVLE_6q15a"; locus "ERVLE_6q15a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1664"; repClass "LTR"; repEnd "2911"; repFamily "ERVL"; repLeft "-2756"; repStart "1068"; ### HERVL40_6q15 ### chr6 rmsk gene 88012261 88017679 . + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0177"; model_cov "2469"; model_pct "44.6"; chr6 rmsk exon 88012261 88012697 1939 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "8"; chr6 rmsk exon 88012709 88012813 349 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "-5416"; repStart "8"; chr6 rmsk exon 88013067 88013409 1061 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "1348"; repFamily "ERVL"; repLeft "-4182"; repStart "991"; chr6 rmsk exon 88013489 88013603 448 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1506"; chr6 rmsk exon 88013602 88014540 3484 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "3009"; repFamily "ERVL"; repLeft "-2521"; repStart "2049"; chr6 rmsk exon 88016780 88017679 3664 + . gene_id "HERVL40_6q15"; transcript_id "HERVL40_6q15"; locus "HERVL40_6q15"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0177"; repClass "LTR"; repEnd "3959"; repFamily "ERVL"; repLeft "-1571"; repStart "3024"; ### HERVW_6q15 ### chr6 rmsk gene 88414193 88421507 . - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0139"; model_cov "6429"; model_pct "74.5"; chr6 rmsk exon 88414193 88414517 2350 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr6 rmsk exon 88414518 88414808 2375 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr6 rmsk exon 88414799 88414837 274 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr6 rmsk exon 88414828 88419156 35535 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "1678"; repStart "-2604"; chr6 rmsk exon 88419153 88420210 8144 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "1863"; repFamily "ERV1"; repLeft "809"; repStart "-6763"; chr6 rmsk exon 88420267 88420974 5689 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "2"; repStart "-7922"; chr6 rmsk exon 88420975 88421507 4165 - . gene_id "HERVW_6q15"; transcript_id "HERVW_6q15"; locus "HERVW_6q15"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0139"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVE_6q15 ### chr6 rmsk gene 88662199 88670950 . + . gene_id "HERVE_6q15"; transcript_id "HERVE_6q15"; locus "HERVE_6q15"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0052"; model_cov "7846"; model_pct "100.0"; chr6 rmsk exon 88662199 88662592 1809 + . gene_id "HERVE_6q15"; transcript_id "HERVE_6q15"; locus "HERVE_6q15"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0052"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "90"; chr6 rmsk exon 88662593 88670501 30996 + . gene_id "HERVE_6q15"; transcript_id "HERVE_6q15"; locus "HERVE_6q15"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0052"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "0"; repStart "-33"; chr6 rmsk exon 88670542 88670950 2006 + . gene_id "HERVE_6q15"; transcript_id "HERVE_6q15"; locus "HERVE_6q15"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0052"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "90"; ### HERVIP10FH_6q15b ### chr6 rmsk gene 88724676 88730582 . + . gene_id "HERVIP10FH_6q15b"; transcript_id "HERVIP10FH_6q15b"; locus "HERVIP10FH_6q15b"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0069"; model_cov "5101"; model_pct "100.0"; chr6 rmsk exon 88724676 88725121 2897 + . gene_id "HERVIP10FH_6q15b"; transcript_id "HERVIP10FH_6q15b"; locus "HERVIP10FH_6q15b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0069"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 88725122 88730135 39879 + . gene_id "HERVIP10FH_6q15b"; transcript_id "HERVIP10FH_6q15b"; locus "HERVIP10FH_6q15b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0069"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 88730136 88730582 2866 + . gene_id "HERVIP10FH_6q15b"; transcript_id "HERVIP10FH_6q15b"; locus "HERVIP10FH_6q15b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0069"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_6q15a ### chr6 rmsk gene 88746280 88747312 . + . gene_id "ERVLB4_6q15a"; transcript_id "ERVLB4_6q15a"; locus "ERVLB4_6q15a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0724"; model_cov "757"; model_pct "13.2"; chr6 rmsk exon 88746280 88746445 1753 + . gene_id "ERVLB4_6q15a"; transcript_id "ERVLB4_6q15a"; locus "ERVLB4_6q15a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0724"; repClass "LTR"; repEnd "1893"; repFamily "ERVL"; repLeft "-3821"; repStart "1728"; chr6 rmsk exon 88746780 88747312 1753 + . gene_id "ERVLB4_6q15a"; transcript_id "ERVLB4_6q15a"; locus "ERVLB4_6q15a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0724"; repClass "LTR"; repEnd "2361"; repFamily "ERVL"; repLeft "-3353"; repStart "1769"; ### ERVLE_6q15b ### chr6 rmsk gene 88762003 88764029 . + . gene_id "ERVLE_6q15b"; transcript_id "ERVLE_6q15b"; locus "ERVLE_6q15b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1666"; model_cov "1029"; model_pct "18.2"; chr6 rmsk exon 88762003 88762412 1350 + . gene_id "ERVLE_6q15b"; transcript_id "ERVLE_6q15b"; locus "ERVLE_6q15b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1666"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "-3403"; repStart "1850"; chr6 rmsk exon 88762405 88762518 254 + . gene_id "ERVLE_6q15b"; transcript_id "ERVLE_6q15b"; locus "ERVLE_6q15b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1666"; repClass "LTR"; repEnd "2471"; repFamily "ERVL"; repLeft "-3196"; repStart "2355"; chr6 rmsk exon 88763558 88764029 1297 + . gene_id "ERVLE_6q15b"; transcript_id "ERVLE_6q15b"; locus "ERVLE_6q15b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1666"; repClass "LTR"; repEnd "3108"; repFamily "ERVL"; repLeft "-2559"; repStart "2609"; ### MER61_6q15 ### chr6 rmsk gene 88965821 88972938 . + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0183"; model_cov "3806"; model_pct "73.0"; chr6 rmsk exon 88965821 88966146 1789 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0183"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 88966149 88966708 26333 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0183"; repClass "LTR"; repEnd "1480"; repFamily "ERV1"; repLeft "-3737"; repStart "1396"; chr6 rmsk exon 88967303 88968291 26333 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0183"; repClass "LTR"; repEnd "2489"; repFamily "ERV1"; repLeft "-2728"; repStart "1484"; chr6 rmsk exon 88968614 88969093 26333 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0183"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "-2182"; repStart "2490"; chr6 rmsk exon 88970252 88972398 26333 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0183"; repClass "LTR"; repEnd "5208"; repFamily "ERV1"; repLeft "-9"; repStart "3036"; chr6 rmsk exon 88972603 88972938 1966 + . gene_id "MER61_6q15"; transcript_id "MER61_6q15"; locus "MER61_6q15"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0183"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_6q15a ### chr6 rmsk gene 89543388 89545528 . - . gene_id "ERV316A3_6q15a"; transcript_id "ERV316A3_6q15a"; locus "ERV316A3_6q15a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1260"; model_cov "1188"; model_pct "22.7"; chr6 rmsk exon 89543388 89544339 1132 - . gene_id "ERV316A3_6q15a"; transcript_id "ERV316A3_6q15a"; locus "ERV316A3_6q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1260"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "968"; repStart "-3276"; chr6 rmsk exon 89544819 89544931 546 - . gene_id "ERV316A3_6q15a"; transcript_id "ERV316A3_6q15a"; locus "ERV316A3_6q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1260"; repClass "LTR"; repEnd "315"; repFamily "ERVL"; repLeft "210"; repStart "-4911"; chr6 rmsk exon 89545242 89545336 546 - . gene_id "ERV316A3_6q15a"; transcript_id "ERV316A3_6q15a"; locus "ERV316A3_6q15a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1260"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "108"; repStart "-5017"; chr6 rmsk exon 89545454 89545528 324 - . gene_id "ERV316A3_6q15a"; transcript_id "ERV316A3_6q15a"; locus "ERV316A3_6q15a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1260"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "1"; repStart "-489"; ### ERVLE_6q15c ### chr6 rmsk gene 89880684 89884610 . - . gene_id "ERVLE_6q15c"; transcript_id "ERVLE_6q15c"; locus "ERVLE_6q15c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1667"; model_cov "2393"; model_pct "42.2"; chr6 rmsk exon 89880684 89881911 4008 - . gene_id "ERVLE_6q15c"; transcript_id "ERVLE_6q15c"; locus "ERVLE_6q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1667"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "3011"; repStart "-1197"; chr6 rmsk exon 89882232 89882812 1935 - . gene_id "ERVLE_6q15c"; transcript_id "ERVLE_6q15c"; locus "ERVLE_6q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1667"; repClass "LTR"; repEnd "3123"; repFamily "ERVL"; repLeft "2512"; repStart "-2544"; chr6 rmsk exon 89884003 89884240 631 - . gene_id "ERVLE_6q15c"; transcript_id "ERVLE_6q15c"; locus "ERVLE_6q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1667"; repClass "LTR"; repEnd "2524"; repFamily "ERVL"; repLeft "2283"; repStart "-3143"; chr6 rmsk exon 89884512 89884610 631 - . gene_id "ERVLE_6q15c"; transcript_id "ERVLE_6q15c"; locus "ERVLE_6q15c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1667"; repClass "LTR"; repEnd "2282"; repFamily "ERVL"; repLeft "2200"; repStart "-3385"; ### ERVLB4_6q15b ### chr6 rmsk gene 90337021 90338480 . + . gene_id "ERVLB4_6q15b"; transcript_id "ERVLB4_6q15b"; locus "ERVLB4_6q15b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0725"; model_cov "705"; model_pct "12.3"; chr6 rmsk exon 90337021 90337456 1749 + . gene_id "ERVLB4_6q15b"; transcript_id "ERVLB4_6q15b"; locus "ERVLB4_6q15b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0725"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 90337458 90337610 3565 + . gene_id "ERVLB4_6q15b"; transcript_id "ERVLB4_6q15b"; locus "ERVLB4_6q15b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0725"; repClass "LTR"; repEnd "140"; repFamily "ERVL"; repLeft "-5574"; repStart "2"; chr6 rmsk exon 90337914 90338480 3565 + . gene_id "ERVLB4_6q15b"; transcript_id "ERVLB4_6q15b"; locus "ERVLB4_6q15b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0725"; repClass "LTR"; repEnd "708"; repFamily "ERVL"; repLeft "-5006"; repStart "141"; ### ERVL_6q15 ### chr6 rmsk gene 90338475 90340237 . + . gene_id "ERVL_6q15"; transcript_id "ERVL_6q15"; locus "ERVL_6q15"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0169"; model_cov "1311"; model_pct "22.8"; chr6 rmsk exon 90338475 90339795 8042 + . gene_id "ERVL_6q15"; transcript_id "ERVL_6q15"; locus "ERVL_6q15"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0169"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "-2"; repStart "4444"; chr6 rmsk exon 90339798 90340237 1905 + . gene_id "ERVL_6q15"; transcript_id "ERVL_6q15"; locus "ERVL_6q15"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0169"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-39"; repStart "1"; ### ERV316A3_6q15b ### chr6 rmsk gene 90417070 90420287 . - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1262"; model_cov "2771"; model_pct "53.0"; chr6 rmsk exon 90417070 90417287 692 - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1262"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "3434"; repStart "-1569"; chr6 rmsk exon 90417399 90417672 744 - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1262"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "2611"; repStart "-2320"; chr6 rmsk exon 90417683 90418606 2181 - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1262"; repClass "LTR"; repEnd "2509"; repFamily "ERVL"; repLeft "1562"; repStart "-2717"; chr6 rmsk exon 90418888 90419720 2181 - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1262"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "730"; repStart "-3665"; chr6 rmsk exon 90419810 90420287 932 - . gene_id "ERV316A3_6q15b"; transcript_id "ERV316A3_6q15b"; locus "ERV316A3_6q15b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1262"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "379"; repStart "-4372"; ### HERVH_6q15 ### chr6 rmsk gene 90670205 90675442 . - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0570"; model_cov "4439"; model_pct "57.6"; chr6 rmsk exon 90670205 90670651 3543 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 90670652 90671024 2547 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 90671025 90671241 1303 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 90671243 90671907 3916 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 90671910 90672409 3203 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 90672400 90672549 928 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 90672529 90674986 15204 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "476"; repStart "-4718"; chr6 rmsk exon 90674992 90675442 3486 - . gene_id "HERVH_6q15"; transcript_id "HERVH_6q15"; locus "HERVH_6q15"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0570"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_6q15 ### chr6 rmsk gene 91362321 91364772 . + . gene_id "HERVL_6q15"; transcript_id "HERVL_6q15"; locus "HERVL_6q15"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0615"; model_cov "1333"; model_pct "23.6"; chr6 rmsk exon 91362321 91362430 825 + . gene_id "HERVL_6q15"; transcript_id "HERVL_6q15"; locus "HERVL_6q15"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0615"; repClass "LTR"; repEnd "6"; repFamily "ERVL"; repLeft "-447"; repStart "-100"; chr6 rmsk exon 91362732 91362962 1299 + . gene_id "HERVL_6q15"; transcript_id "HERVL_6q15"; locus "HERVL_6q15"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0615"; repClass "LTR"; repEnd "303"; repFamily "ERVL"; repLeft "-150"; repStart "95"; chr6 rmsk exon 91362963 91364271 9462 + . gene_id "HERVL_6q15"; transcript_id "HERVL_6q15"; locus "HERVL_6q15"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0615"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4321"; chr6 rmsk exon 91364272 91364772 1886 + . gene_id "HERVL_6q15"; transcript_id "HERVL_6q15"; locus "HERVL_6q15"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0615"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-46"; repStart "-100"; ### MER41_6q15 ### chr6 rmsk gene 92198236 92201341 . + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; category "internal"; intModel "MER41-int"; locid "MER41-int_0224"; model_cov "2541"; model_pct "42.7"; chr6 rmsk exon 92198236 92198266 7191 + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0224"; repClass "LTR"; repEnd "3756"; repFamily "ERV1"; repLeft "-2190"; repStart "3717"; chr6 rmsk exon 92198617 92199575 7191 + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0224"; repClass "LTR"; repEnd "4678"; repFamily "ERV1"; repLeft "-1268"; repStart "3757"; chr6 rmsk exon 92199875 92200034 7191 + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0224"; repClass "LTR"; repEnd "4831"; repFamily "ERV1"; repLeft "-1115"; repStart "4679"; chr6 rmsk exon 92200066 92200948 7191 + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0224"; repClass "LTR"; repEnd "5872"; repFamily "ERV1"; repLeft "-74"; repStart "4515"; chr6 rmsk exon 92201263 92201341 3655 + . gene_id "MER41_6q15"; transcript_id "MER41_6q15"; locus "MER41_6q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0224"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "5873"; ### ERVLB4_6q15c ### chr6 rmsk gene 92263279 92263885 . + . gene_id "ERVLB4_6q15c"; transcript_id "ERVLB4_6q15c"; locus "ERVLB4_6q15c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0726"; model_cov "790"; model_pct "13.8"; chr6 rmsk exon 92263279 92263885 799 + . gene_id "ERVLB4_6q15c"; transcript_id "ERVLB4_6q15c"; locus "ERVLB4_6q15c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0726"; repClass "LTR"; repEnd "2981"; repFamily "ERVL"; repLeft "-2733"; repStart "2191"; ### ERVLE_6q15d ### chr6 rmsk gene 92264218 92265117 . + . gene_id "ERVLE_6q15d"; transcript_id "ERVLE_6q15d"; locus "ERVLE_6q15d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1671"; model_cov "646"; model_pct "11.4"; chr6 rmsk exon 92264218 92264284 308 + . gene_id "ERVLE_6q15d"; transcript_id "ERVLE_6q15d"; locus "ERVLE_6q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1671"; repClass "LTR"; repEnd "3386"; repFamily "ERVL"; repLeft "-2281"; repStart "3320"; chr6 rmsk exon 92264557 92264619 310 + . gene_id "ERVLE_6q15d"; transcript_id "ERVLE_6q15d"; locus "ERVLE_6q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1671"; repClass "LTR"; repEnd "4201"; repFamily "ERVL"; repLeft "-1466"; repStart "4139"; chr6 rmsk exon 92264612 92265117 1143 + . gene_id "ERVLE_6q15d"; transcript_id "ERVLE_6q15d"; locus "ERVLE_6q15d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1671"; repClass "LTR"; repEnd "4737"; repFamily "ERVL"; repLeft "-930"; repStart "4219"; ### HERVL40_6q16.1a ### chr6 rmsk gene 92800175 92802383 . - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0178"; model_cov "1566"; model_pct "28.3"; chr6 rmsk exon 92800175 92800930 1811 - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0178"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "815"; repStart "-3935"; chr6 rmsk exon 92801073 92801288 696 - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0178"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "568"; repStart "-4748"; chr6 rmsk exon 92801316 92801472 615 - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0178"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "413"; repStart "-4960"; chr6 rmsk exon 92801486 92801904 1100 - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0178"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "16"; repStart "-5099"; chr6 rmsk exon 92801941 92802383 1576 - . gene_id "HERVL40_6q16.1a"; transcript_id "HERVL40_6q16.1a"; locus "HERVL40_6q16.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0178"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "1"; repStart "-50"; ### MER4_6q16.1a ### chr6 rmsk gene 92825403 92826892 . + . gene_id "MER4_6q16.1a"; transcript_id "MER4_6q16.1a"; locus "MER4_6q16.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0334"; model_cov "1082"; model_pct "16.4"; chr6 rmsk exon 92825403 92825876 3430 + . gene_id "MER4_6q16.1a"; transcript_id "MER4_6q16.1a"; locus "MER4_6q16.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0334"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 92825880 92826436 2330 + . gene_id "MER4_6q16.1a"; transcript_id "MER4_6q16.1a"; locus "MER4_6q16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0334"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr6 rmsk exon 92826425 92826510 377 + . gene_id "MER4_6q16.1a"; transcript_id "MER4_6q16.1a"; locus "MER4_6q16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0334"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-721"; chr6 rmsk exon 92826584 92826892 1189 + . gene_id "MER4_6q16.1a"; transcript_id "MER4_6q16.1a"; locus "MER4_6q16.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0334"; repClass "LTR"; repEnd "2434"; repFamily "ERV1"; repLeft "-4164"; repStart "2119"; ### MER4B_6q16.1 ### chr6 rmsk gene 92826950 92829394 . + . gene_id "MER4B_6q16.1"; transcript_id "MER4B_6q16.1"; locus "MER4B_6q16.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0192"; model_cov "1872"; model_pct "27.7"; chr6 rmsk exon 92826950 92827792 5016 + . gene_id "MER4B_6q16.1"; transcript_id "MER4B_6q16.1"; locus "MER4B_6q16.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0192"; repClass "LTR"; repEnd "1138"; repFamily "ERV1"; repLeft "-5620"; repStart "196"; chr6 rmsk exon 92827839 92828235 5016 + . gene_id "MER4B_6q16.1"; transcript_id "MER4B_6q16.1"; locus "MER4B_6q16.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0192"; repClass "LTR"; repEnd "1460"; repFamily "ERV1"; repLeft "-5298"; repStart "1139"; chr6 rmsk exon 92828541 92828732 5016 + . gene_id "MER4B_6q16.1"; transcript_id "MER4B_6q16.1"; locus "MER4B_6q16.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0192"; repClass "LTR"; repEnd "1657"; repFamily "ERV1"; repLeft "-5101"; repStart "1461"; chr6 rmsk exon 92828975 92829394 1881 + . gene_id "MER4B_6q16.1"; transcript_id "MER4B_6q16.1"; locus "MER4B_6q16.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0192"; repClass "LTR"; repEnd "3310"; repFamily "ERV1"; repLeft "-3448"; repStart "2897"; ### MER4_6q16.1b ### chr6 rmsk gene 92829906 92833365 . + . gene_id "MER4_6q16.1b"; transcript_id "MER4_6q16.1b"; locus "MER4_6q16.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0335"; model_cov "2746"; model_pct "41.6"; chr6 rmsk exon 92829906 92830984 16667 + . gene_id "MER4_6q16.1b"; transcript_id "MER4_6q16.1b"; locus "MER4_6q16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0335"; repClass "LTR"; repEnd "4952"; repFamily "ERV1"; repLeft "-1646"; repStart "3837"; chr6 rmsk exon 92831272 92832877 16667 + . gene_id "MER4_6q16.1b"; transcript_id "MER4_6q16.1b"; locus "MER4_6q16.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0335"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4953"; chr6 rmsk exon 92832892 92833365 3018 + . gene_id "MER4_6q16.1b"; transcript_id "MER4_6q16.1b"; locus "MER4_6q16.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0335"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL32_6q16.1 ### chr6 rmsk gene 92936553 92938404 . - . gene_id "HERVL32_6q16.1"; transcript_id "HERVL32_6q16.1"; locus "HERVL32_6q16.1"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0026"; model_cov "1327"; model_pct "38.8"; chr6 rmsk exon 92936553 92936645 554 - . gene_id "HERVL32_6q16.1"; transcript_id "HERVL32_6q16.1"; locus "HERVL32_6q16.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0026"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "363"; repStart "-2"; chr6 rmsk exon 92936852 92938168 3861 - . gene_id "HERVL32_6q16.1"; transcript_id "HERVL32_6q16.1"; locus "HERVL32_6q16.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0026"; repClass "LTR"; repEnd "1328"; repFamily "ERVL"; repLeft "1"; repStart "-2090"; chr6 rmsk exon 92938169 92938344 798 - . gene_id "HERVL32_6q16.1"; transcript_id "HERVL32_6q16.1"; locus "HERVL32_6q16.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0026"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "271"; repStart "0"; chr6 rmsk exon 92938361 92938404 327 - . gene_id "HERVL32_6q16.1"; transcript_id "HERVL32_6q16.1"; locus "HERVL32_6q16.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0026"; repClass "LTR"; repEnd "48"; repFamily "ERVL"; repLeft "5"; repStart "-409"; ### HML3_6q16.1 ### chr6 rmsk gene 93198190 93199902 . - . gene_id "HML3_6q16.1"; transcript_id "HML3_6q16.1"; locus "HML3_6q16.1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0109"; model_cov "1264"; model_pct "21.0"; chr6 rmsk exon 93198190 93198702 4127 - . gene_id "HML3_6q16.1"; transcript_id "HML3_6q16.1"; locus "HML3_6q16.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0109"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 93198703 93199902 6211 - . gene_id "HML3_6q16.1"; transcript_id "HML3_6q16.1"; locus "HML3_6q16.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0109"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4757"; repStart "0"; ### ERVL_6q16.1a ### chr6 rmsk gene 93659300 93661187 . + . gene_id "ERVL_6q16.1a"; transcript_id "ERVL_6q16.1a"; locus "ERVL_6q16.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0171"; model_cov "1177"; model_pct "20.4"; chr6 rmsk exon 93659300 93660467 927 + . gene_id "ERVL_6q16.1a"; transcript_id "ERVL_6q16.1a"; locus "ERVL_6q16.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0171"; repClass "LTR"; repEnd "2891"; repFamily "ERVL"; repLeft "-2866"; repStart "1714"; chr6 rmsk exon 93660605 93661187 2099 + . gene_id "ERVL_6q16.1a"; transcript_id "ERVL_6q16.1a"; locus "ERVL_6q16.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0171"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_6q16.1a ### chr6 rmsk gene 93660605 93667860 . + . gene_id "HERVL_6q16.1a"; transcript_id "HERVL_6q16.1a"; locus "HERVL_6q16.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0616"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 93660605 93661187 2099 + . gene_id "HERVL_6q16.1a"; transcript_id "HERVL_6q16.1a"; locus "HERVL_6q16.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0616"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 93661188 93664518 36130 + . gene_id "HERVL_6q16.1a"; transcript_id "HERVL_6q16.1a"; locus "HERVL_6q16.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0616"; repClass "LTR"; repEnd "3360"; repFamily "ERVL"; repLeft "-2294"; repStart "1"; chr6 rmsk exon 93664990 93667279 36130 + . gene_id "HERVL_6q16.1a"; transcript_id "HERVL_6q16.1a"; locus "HERVL_6q16.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0616"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3361"; chr6 rmsk exon 93667280 93667860 1910 + . gene_id "HERVL_6q16.1a"; transcript_id "HERVL_6q16.1a"; locus "HERVL_6q16.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0616"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_6q16.1a ### chr6 rmsk gene 93674287 93675066 . + . gene_id "ERVLB4_6q16.1a"; transcript_id "ERVLB4_6q16.1a"; locus "ERVLB4_6q16.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0727"; model_cov "790"; model_pct "13.8"; chr6 rmsk exon 93674287 93675066 4878 + . gene_id "ERVLB4_6q16.1a"; transcript_id "ERVLB4_6q16.1a"; locus "ERVLB4_6q16.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0727"; repClass "LTR"; repEnd "5235"; repFamily "ERVL"; repLeft "-479"; repStart "4445"; ### HERVL40_6q16.1b ### chr6 rmsk gene 93690585 93696772 . - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0179"; model_cov "4116"; model_pct "74.4"; chr6 rmsk exon 93690585 93691065 1607 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "8"; repStart "0"; chr6 rmsk exon 93691095 93691349 1221 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "5508"; repFamily "ERVL"; repLeft "5247"; repStart "-22"; chr6 rmsk exon 93692397 93692539 269 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4522"; repStart "-874"; chr6 rmsk exon 93692538 93694642 3947 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "2104"; repStart "-1222"; chr6 rmsk exon 93694662 93696214 3291 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "1536"; repFamily "ERVL"; repLeft "19"; repStart "-3994"; chr6 rmsk exon 93696262 93696556 777 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "477"; repFamily "ERVL"; repLeft "189"; repStart "-42"; chr6 rmsk exon 93696621 93696772 826 - . gene_id "HERVL40_6q16.1b"; transcript_id "HERVL40_6q16.1b"; locus "HERVL40_6q16.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0179"; repClass "LTR"; repEnd "152"; repFamily "ERVL"; repLeft "1"; repStart "-367"; ### ERVL_6q16.1b ### chr6 rmsk gene 93719201 93720026 . + . gene_id "ERVL_6q16.1b"; transcript_id "ERVL_6q16.1b"; locus "ERVL_6q16.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0173"; model_cov "646"; model_pct "11.2"; chr6 rmsk exon 93719201 93719340 373 + . gene_id "ERVL_6q16.1b"; transcript_id "ERVL_6q16.1b"; locus "ERVL_6q16.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0173"; repClass "LTR"; repEnd "4209"; repFamily "ERVL"; repLeft "-1548"; repStart "4058"; chr6 rmsk exon 93719504 93719620 270 + . gene_id "ERVL_6q16.1b"; transcript_id "ERVL_6q16.1b"; locus "ERVL_6q16.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0173"; repClass "LTR"; repEnd "4576"; repFamily "ERVL"; repLeft "-1181"; repStart "4458"; chr6 rmsk exon 93719725 93720026 422 + . gene_id "ERVL_6q16.1b"; transcript_id "ERVL_6q16.1b"; locus "ERVL_6q16.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0173"; repClass "LTR"; repEnd "5070"; repFamily "ERVL"; repLeft "-687"; repStart "4693"; ### HERVH_6q16.1a ### chr6 rmsk gene 93830156 93835749 . - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0571"; model_cov "4916"; model_pct "63.7"; chr6 rmsk exon 93830156 93830561 3012 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-46"; chr6 rmsk exon 93830562 93830887 1892 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 93830886 93831101 1379 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 93831103 93831764 4328 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 93831767 93832272 3354 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 93832263 93832412 916 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 93832392 93835296 16697 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 93835299 93835749 3508 - . gene_id "HERVH_6q16.1a"; transcript_id "HERVH_6q16.1a"; locus "HERVH_6q16.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0571"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_6q16.1a ### chr6 rmsk gene 93837870 93842822 . + . gene_id "ERV316A3_6q16.1a"; transcript_id "ERV316A3_6q16.1a"; locus "ERV316A3_6q16.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1263"; model_cov "1443"; model_pct "27.6"; chr6 rmsk exon 93837870 93838076 318 + . gene_id "ERV316A3_6q16.1a"; transcript_id "ERV316A3_6q16.1a"; locus "ERV316A3_6q16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1263"; repClass "LTR"; repEnd "2870"; repFamily "ERVL"; repLeft "-2356"; repStart "2645"; chr6 rmsk exon 93840413 93840539 474 + . gene_id "ERV316A3_6q16.1a"; transcript_id "ERV316A3_6q16.1a"; locus "ERV316A3_6q16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1263"; repClass "LTR"; repEnd "4001"; repFamily "ERVL"; repLeft "-1225"; repStart "3876"; chr6 rmsk exon 93841430 93842502 1528 + . gene_id "ERV316A3_6q16.1a"; transcript_id "ERV316A3_6q16.1a"; locus "ERV316A3_6q16.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1263"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "4049"; chr6 rmsk exon 93842568 93842822 1085 + . gene_id "ERV316A3_6q16.1a"; transcript_id "ERV316A3_6q16.1a"; locus "ERV316A3_6q16.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1263"; repClass "LTR"; repEnd "288"; repFamily "ERVL"; repLeft "-150"; repStart "37"; ### ERVLB4_6q16.1b ### chr6 rmsk gene 94097072 94101655 . + . gene_id "ERVLB4_6q16.1b"; transcript_id "ERVLB4_6q16.1b"; locus "ERVLB4_6q16.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0729"; model_cov "3866"; model_pct "67.7"; chr6 rmsk exon 94097072 94097460 1156 + . gene_id "ERVLB4_6q16.1b"; transcript_id "ERVLB4_6q16.1b"; locus "ERVLB4_6q16.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0729"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr6 rmsk exon 94097539 94097653 18893 + . gene_id "ERVLB4_6q16.1b"; transcript_id "ERVLB4_6q16.1b"; locus "ERVLB4_6q16.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0729"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "-5599"; repStart "1"; chr6 rmsk exon 94097943 94101655 18893 + . gene_id "ERVLB4_6q16.1b"; transcript_id "ERVLB4_6q16.1b"; locus "ERVLB4_6q16.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0729"; repClass "LTR"; repEnd "3868"; repFamily "ERVL"; repLeft "-1846"; repStart "116"; ### ERV316A3_6q16.1b ### chr6 rmsk gene 94107416 94109509 . - . gene_id "ERV316A3_6q16.1b"; transcript_id "ERV316A3_6q16.1b"; locus "ERV316A3_6q16.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1264"; model_cov "1714"; model_pct "32.8"; chr6 rmsk exon 94107416 94107686 556 - . gene_id "ERV316A3_6q16.1b"; transcript_id "ERV316A3_6q16.1b"; locus "ERV316A3_6q16.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1264"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "79"; repStart "-107"; chr6 rmsk exon 94107707 94108873 2728 - . gene_id "ERV316A3_6q16.1b"; transcript_id "ERV316A3_6q16.1b"; locus "ERV316A3_6q16.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1264"; repClass "LTR"; repEnd "5213"; repFamily "ERVL"; repLeft "4017"; repStart "-13"; chr6 rmsk exon 94109017 94109509 1116 - . gene_id "ERV316A3_6q16.1b"; transcript_id "ERV316A3_6q16.1b"; locus "ERV316A3_6q16.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1264"; repClass "LTR"; repEnd "1019"; repFamily "ERVL"; repLeft "501"; repStart "-4207"; ### HERVH_6q16.1b ### chr6 rmsk gene 94553919 94559610 . - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0572"; model_cov "4919"; model_pct "63.8"; chr6 rmsk exon 94553919 94554368 3179 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 94554369 94554748 2452 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 94554747 94554975 1314 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr6 rmsk exon 94554973 94555636 4278 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 94555639 94556138 3297 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 94556129 94556278 917 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 94556258 94559158 19024 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 94559161 94559610 3264 - . gene_id "HERVH_6q16.1b"; transcript_id "HERVH_6q16.1b"; locus "HERVH_6q16.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0572"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_6q16.1b ### chr6 rmsk gene 95197396 95198340 . - . gene_id "HERVL_6q16.1b"; transcript_id "HERVL_6q16.1b"; locus "HERVL_6q16.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0617"; model_cov "743"; model_pct "13.1"; chr6 rmsk exon 95197396 95197554 1072 - . gene_id "HERVL_6q16.1b"; transcript_id "HERVL_6q16.1b"; locus "HERVL_6q16.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0617"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "293"; repStart "0"; chr6 rmsk exon 95197599 95198340 5297 - . gene_id "HERVL_6q16.1b"; transcript_id "HERVL_6q16.1b"; locus "HERVL_6q16.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0617"; repClass "LTR"; repEnd "3448"; repFamily "ERVL"; repLeft "2705"; repStart "-2206"; ### HUERSP2_6q16.1 ### chr6 rmsk gene 95258909 95263868 . - . gene_id "HUERSP2_6q16.1"; transcript_id "HUERSP2_6q16.1"; locus "HUERSP2_6q16.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0062"; model_cov "3085"; model_pct "99.9"; chr6 rmsk exon 95258909 95259742 1844 - . gene_id "HUERSP2_6q16.1"; transcript_id "HUERSP2_6q16.1"; locus "HUERSP2_6q16.1"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0062"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 95259743 95259966 1913 - . gene_id "HUERSP2_6q16.1"; transcript_id "HUERSP2_6q16.1"; locus "HUERSP2_6q16.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0062"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2874"; repStart "0"; chr6 rmsk exon 95260263 95263016 13462 - . gene_id "HUERSP2_6q16.1"; transcript_id "HUERSP2_6q16.1"; locus "HUERSP2_6q16.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0062"; repClass "LTR"; repEnd "2873"; repFamily "ERV1"; repLeft "2"; repStart "-215"; chr6 rmsk exon 95263018 95263868 2014 - . gene_id "HUERSP2_6q16.1"; transcript_id "HUERSP2_6q16.1"; locus "HUERSP2_6q16.1"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0062"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### HERVL40_6q16.1c ### chr6 rmsk gene 95417841 95419170 . + . gene_id "HERVL40_6q16.1c"; transcript_id "HERVL40_6q16.1c"; locus "HERVL40_6q16.1c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0181"; model_cov "996"; model_pct "18.0"; chr6 rmsk exon 95417841 95418003 322 + . gene_id "HERVL40_6q16.1c"; transcript_id "HERVL40_6q16.1c"; locus "HERVL40_6q16.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0181"; repClass "LTR"; repEnd "2498"; repFamily "ERVL"; repLeft "-3032"; repStart "2337"; chr6 rmsk exon 95418258 95418412 2102 + . gene_id "HERVL40_6q16.1c"; transcript_id "HERVL40_6q16.1c"; locus "HERVL40_6q16.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0181"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "-2559"; repStart "2812"; chr6 rmsk exon 95418495 95419170 2102 + . gene_id "HERVL40_6q16.1c"; transcript_id "HERVL40_6q16.1c"; locus "HERVL40_6q16.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0181"; repClass "LTR"; repEnd "3648"; repFamily "ERVL"; repLeft "-1882"; repStart "2972"; ### MER101_6q16.1 ### chr6 rmsk gene 95523292 95525381 . + . gene_id "MER101_6q16.1"; transcript_id "MER101_6q16.1"; locus "MER101_6q16.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0188"; model_cov "1217"; model_pct "18.3"; chr6 rmsk exon 95523292 95523765 1450 + . gene_id "MER101_6q16.1"; transcript_id "MER101_6q16.1"; locus "MER101_6q16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0188"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "2277"; chr6 rmsk exon 95523914 95523975 3070 + . gene_id "MER101_6q16.1"; transcript_id "MER101_6q16.1"; locus "MER101_6q16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0188"; repClass "LTR"; repEnd "2824"; repFamily "ERV1"; repLeft "-3815"; repStart "2760"; chr6 rmsk exon 95524002 95524548 3070 + . gene_id "MER101_6q16.1"; transcript_id "MER101_6q16.1"; locus "MER101_6q16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0188"; repClass "LTR"; repEnd "3406"; repFamily "ERV1"; repLeft "-3233"; repStart "2825"; chr6 rmsk exon 95525285 95525381 444 + . gene_id "MER101_6q16.1"; transcript_id "MER101_6q16.1"; locus "MER101_6q16.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0188"; repClass "LTR"; repEnd "3503"; repFamily "ERV1"; repLeft "-3136"; repStart "3419"; ### MER4_6q16.1c ### chr6 rmsk gene 95639371 95642000 . + . gene_id "MER4_6q16.1c"; transcript_id "MER4_6q16.1c"; locus "MER4_6q16.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0336"; model_cov "2659"; model_pct "40.3"; chr6 rmsk exon 95639371 95642000 10907 + . gene_id "MER4_6q16.1c"; transcript_id "MER4_6q16.1c"; locus "MER4_6q16.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0336"; repClass "LTR"; repEnd "6104"; repFamily "ERV1"; repLeft "-494"; repStart "3445"; ### HERVL74_6q16.1 ### chr6 rmsk gene 95769028 95770798 . + . gene_id "HERVL74_6q16.1"; transcript_id "HERVL74_6q16.1"; locus "HERVL74_6q16.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0036"; model_cov "1139"; model_pct "20.0"; chr6 rmsk exon 95769028 95770039 3302 + . gene_id "HERVL74_6q16.1"; transcript_id "HERVL74_6q16.1"; locus "HERVL74_6q16.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0036"; repClass "LTR"; repEnd "5241"; repFamily "ERVL"; repLeft "-444"; repStart "4246"; chr6 rmsk exon 95770062 95770202 588 + . gene_id "HERVL74_6q16.1"; transcript_id "HERVL74_6q16.1"; locus "HERVL74_6q16.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0036"; repClass "LTR"; repEnd "5532"; repFamily "ERVL"; repLeft "-153"; repStart "5388"; chr6 rmsk exon 95770344 95770798 1896 + . gene_id "HERVL74_6q16.1"; transcript_id "HERVL74_6q16.1"; locus "HERVL74_6q16.1"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0036"; repClass "LTR"; repEnd "558"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### HERVL40_6q16.1d ### chr6 rmsk gene 95839859 95842098 . + . gene_id "HERVL40_6q16.1d"; transcript_id "HERVL40_6q16.1d"; locus "HERVL40_6q16.1d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0182"; model_cov "814"; model_pct "14.7"; chr6 rmsk exon 95839859 95840431 2297 + . gene_id "HERVL40_6q16.1d"; transcript_id "HERVL40_6q16.1d"; locus "HERVL40_6q16.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0182"; repClass "LTR"; repEnd "4364"; repFamily "ERVL"; repLeft "-1166"; repStart "3781"; chr6 rmsk exon 95840743 95841034 2297 + . gene_id "HERVL40_6q16.1d"; transcript_id "HERVL40_6q16.1d"; locus "HERVL40_6q16.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0182"; repClass "LTR"; repEnd "4596"; repFamily "ERVL"; repLeft "-934"; repStart "4365"; chr6 rmsk exon 95841592 95842098 1906 + . gene_id "HERVL40_6q16.1d"; transcript_id "HERVL40_6q16.1d"; locus "HERVL40_6q16.1d"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0182"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL40_6q16.1e ### chr6 rmsk gene 96022613 96026191 . - . gene_id "HERVL40_6q16.1e"; transcript_id "HERVL40_6q16.1e"; locus "HERVL40_6q16.1e"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0183"; model_cov "2910"; model_pct "52.6"; chr6 rmsk exon 96022613 96025463 7922 - . gene_id "HERVL40_6q16.1e"; transcript_id "HERVL40_6q16.1e"; locus "HERVL40_6q16.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0183"; repClass "LTR"; repEnd "2925"; repFamily "ERVL"; repLeft "88"; repStart "-2605"; chr6 rmsk exon 96025688 96025760 425 - . gene_id "HERVL40_6q16.1e"; transcript_id "HERVL40_6q16.1e"; locus "HERVL40_6q16.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0183"; repClass "LTR"; repEnd "83"; repFamily "ERVL"; repLeft "10"; repStart "-5447"; chr6 rmsk exon 96025774 96026191 1412 - . gene_id "HERVL40_6q16.1e"; transcript_id "HERVL40_6q16.1e"; locus "HERVL40_6q16.1e"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0183"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "4"; repStart "-4"; ### HUERSP1_6q16.1 ### chr6 rmsk gene 96403311 96409458 . + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0081"; model_cov "5883"; model_pct "93.9"; chr6 rmsk exon 96403311 96403455 1039 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "547"; chr6 rmsk exon 96403457 96404607 10833 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "1221"; repFamily "ERV1"; repLeft "-5042"; repStart "2"; chr6 rmsk exon 96404667 96405251 10833 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "1811"; repFamily "ERV1"; repLeft "-4452"; repStart "1222"; chr6 rmsk exon 96405240 96405849 18171 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "2060"; repFamily "ERV1"; repLeft "-4203"; repStart "1456"; chr6 rmsk exon 96406214 96409202 18171 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "4877"; repFamily "ERV1"; repLeft "-1386"; repStart "1406"; chr6 rmsk exon 96409203 96409458 1494 + . gene_id "HUERSP1_6q16.1"; transcript_id "HUERSP1_6q16.1"; locus "HUERSP1_6q16.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0081"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "-102"; repStart "340"; ### ERVLE_6q16.1a ### chr6 rmsk gene 96454836 96457626 . + . gene_id "ERVLE_6q16.1a"; transcript_id "ERVLE_6q16.1a"; locus "ERVLE_6q16.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1672"; model_cov "2624"; model_pct "46.3"; chr6 rmsk exon 96454836 96455061 1837 + . gene_id "ERVLE_6q16.1a"; transcript_id "ERVLE_6q16.1a"; locus "ERVLE_6q16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1672"; repClass "LTR"; repEnd "1310"; repFamily "ERVL"; repLeft "-4357"; repStart "1085"; chr6 rmsk exon 96455351 96457626 3294 + . gene_id "ERVLE_6q16.1a"; transcript_id "ERVLE_6q16.1a"; locus "ERVLE_6q16.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1672"; repClass "LTR"; repEnd "3710"; repFamily "ERVL"; repLeft "-1957"; repStart "1311"; ### ERV316A3_6q16.1c ### chr6 rmsk gene 96459409 96460877 . + . gene_id "ERV316A3_6q16.1c"; transcript_id "ERV316A3_6q16.1c"; locus "ERV316A3_6q16.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1266"; model_cov "1351"; model_pct "25.9"; chr6 rmsk exon 96459409 96459768 281 + . gene_id "ERV316A3_6q16.1c"; transcript_id "ERV316A3_6q16.1c"; locus "ERV316A3_6q16.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1266"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-4854"; repStart "1"; chr6 rmsk exon 96459925 96460877 1862 + . gene_id "ERV316A3_6q16.1c"; transcript_id "ERV316A3_6q16.1c"; locus "ERV316A3_6q16.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1266"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "-3583"; repStart "663"; ### ERVLE_6q16.1b ### chr6 rmsk gene 96667762 96669074 . + . gene_id "ERVLE_6q16.1b"; transcript_id "ERVLE_6q16.1b"; locus "ERVLE_6q16.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1673"; model_cov "1167"; model_pct "20.6"; chr6 rmsk exon 96667762 96667866 475 + . gene_id "ERVLE_6q16.1b"; transcript_id "ERVLE_6q16.1b"; locus "ERVLE_6q16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1673"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "-2078"; repStart "3484"; chr6 rmsk exon 96667879 96668754 3209 + . gene_id "ERVLE_6q16.1b"; transcript_id "ERVLE_6q16.1b"; locus "ERVLE_6q16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1673"; repClass "LTR"; repEnd "4548"; repFamily "ERVL"; repLeft "-1119"; repStart "3649"; chr6 rmsk exon 96668912 96669074 640 + . gene_id "ERVLE_6q16.1b"; transcript_id "ERVLE_6q16.1b"; locus "ERVLE_6q16.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1673"; repClass "LTR"; repEnd "4968"; repFamily "ERVL"; repLeft "-699"; repStart "4805"; ### ERVLB4_6q16.1c ### chr6 rmsk gene 96701112 96705067 . + . gene_id "ERVLB4_6q16.1c"; transcript_id "ERVLB4_6q16.1c"; locus "ERVLB4_6q16.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0731"; model_cov "3529"; model_pct "61.8"; chr6 rmsk exon 96701112 96701642 2321 + . gene_id "ERVLB4_6q16.1c"; transcript_id "ERVLB4_6q16.1c"; locus "ERVLB4_6q16.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0731"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-5"; repStart "1"; chr6 rmsk exon 96701643 96705067 20245 + . gene_id "ERVLB4_6q16.1c"; transcript_id "ERVLB4_6q16.1c"; locus "ERVLB4_6q16.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0731"; repClass "LTR"; repEnd "3530"; repFamily "ERVL"; repLeft "-2184"; repStart "1"; ### ERVLE_6q16.1c ### chr6 rmsk gene 96805587 96807500 . + . gene_id "ERVLE_6q16.1c"; transcript_id "ERVLE_6q16.1c"; locus "ERVLE_6q16.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1674"; model_cov "2122"; model_pct "37.4"; chr6 rmsk exon 96805587 96807119 2928 + . gene_id "ERVLE_6q16.1c"; transcript_id "ERVLE_6q16.1c"; locus "ERVLE_6q16.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1674"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1858"; repStart "2081"; chr6 rmsk exon 96807118 96807500 1723 + . gene_id "ERVLE_6q16.1c"; transcript_id "ERVLE_6q16.1c"; locus "ERVLE_6q16.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1674"; repClass "LTR"; repEnd "4312"; repFamily "ERVL"; repLeft "-1355"; repStart "3918"; ### ERVLE_6q16.1d ### chr6 rmsk gene 96853744 96855659 . - . gene_id "ERVLE_6q16.1d"; transcript_id "ERVLE_6q16.1d"; locus "ERVLE_6q16.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1675"; model_cov "1011"; model_pct "17.8"; chr6 rmsk exon 96853744 96854521 1327 - . gene_id "ERVLE_6q16.1d"; transcript_id "ERVLE_6q16.1d"; locus "ERVLE_6q16.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1675"; repClass "LTR"; repEnd "2053"; repFamily "ERVL"; repLeft "1263"; repStart "-3614"; chr6 rmsk exon 96855444 96855659 261 - . gene_id "ERVLE_6q16.1d"; transcript_id "ERVLE_6q16.1d"; locus "ERVLE_6q16.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1675"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "562"; repStart "-4884"; ### ERVL_6q16.1c ### chr6 rmsk gene 97422878 97424711 . - . gene_id "ERVL_6q16.1c"; transcript_id "ERVL_6q16.1c"; locus "ERVL_6q16.1c"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0174"; model_cov "1851"; model_pct "32.2"; chr6 rmsk exon 97422878 97424672 10455 - . gene_id "ERVL_6q16.1c"; transcript_id "ERVL_6q16.1c"; locus "ERVL_6q16.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0174"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "3567"; repStart "-385"; chr6 rmsk exon 97424665 97424711 364 - . gene_id "ERVL_6q16.1c"; transcript_id "ERVL_6q16.1c"; locus "ERVL_6q16.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0174"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "2534"; repStart "-3177"; ### ERV316A3_6q16.1d ### chr6 rmsk gene 97724841 97725981 . + . gene_id "ERV316A3_6q16.1d"; transcript_id "ERV316A3_6q16.1d"; locus "ERV316A3_6q16.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1268"; model_cov "575"; model_pct "11.0"; chr6 rmsk exon 97724841 97725407 603 + . gene_id "ERV316A3_6q16.1d"; transcript_id "ERV316A3_6q16.1d"; locus "ERV316A3_6q16.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1268"; repClass "LTR"; repEnd "5065"; repFamily "ERVL"; repLeft "-161"; repStart "4490"; chr6 rmsk exon 97725523 97725981 1171 + . gene_id "ERV316A3_6q16.1d"; transcript_id "ERV316A3_6q16.1d"; locus "ERV316A3_6q16.1d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1268"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### HERVH_6q16.1c ### chr6 rmsk gene 97779488 97785325 . + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0573"; model_cov "4916"; model_pct "63.7"; chr6 rmsk exon 97779488 97779947 3363 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 97779950 97782999 20668 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 97782979 97783125 924 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 97783116 97783620 3281 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 97783623 97784278 4251 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 97784280 97784494 1385 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 97784493 97784871 2451 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 97784872 97785325 3477 + . gene_id "HERVH_6q16.1c"; transcript_id "HERVH_6q16.1c"; locus "HERVH_6q16.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0573"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6q16.1e ### chr6 rmsk gene 98091032 98092646 . - . gene_id "ERV316A3_6q16.1e"; transcript_id "ERV316A3_6q16.1e"; locus "ERV316A3_6q16.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1269"; model_cov "915"; model_pct "17.5"; chr6 rmsk exon 98091032 98091817 1812 - . gene_id "ERV316A3_6q16.1e"; transcript_id "ERV316A3_6q16.1e"; locus "ERV316A3_6q16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1269"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "95"; repStart "-4298"; chr6 rmsk exon 98091843 98091926 255 - . gene_id "ERV316A3_6q16.1e"; transcript_id "ERV316A3_6q16.1e"; locus "ERV316A3_6q16.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1269"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "16"; repStart "-5128"; chr6 rmsk exon 98091943 98092078 362 - . gene_id "ERV316A3_6q16.1e"; transcript_id "ERV316A3_6q16.1e"; locus "ERV316A3_6q16.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1269"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "298"; repStart "-14"; chr6 rmsk exon 98092423 98092646 810 - . gene_id "ERV316A3_6q16.1e"; transcript_id "ERV316A3_6q16.1e"; locus "ERV316A3_6q16.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1269"; repClass "LTR"; repEnd "226"; repFamily "ERVL"; repLeft "1"; repStart "-236"; ### HERVL_6q16.1c ### chr6 rmsk gene 98166615 98173383 . + . gene_id "HERVL_6q16.1c"; transcript_id "HERVL_6q16.1c"; locus "HERVL_6q16.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0618"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 98166615 98167057 3213 + . gene_id "HERVL_6q16.1c"; transcript_id "HERVL_6q16.1c"; locus "HERVL_6q16.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0618"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 98167058 98171984 37846 + . gene_id "HERVL_6q16.1c"; transcript_id "HERVL_6q16.1c"; locus "HERVL_6q16.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0618"; repClass "LTR"; repEnd "4947"; repFamily "ERVL"; repLeft "-707"; repStart "1"; chr6 rmsk exon 98172244 98172945 37846 + . gene_id "HERVL_6q16.1c"; transcript_id "HERVL_6q16.1c"; locus "HERVL_6q16.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0618"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4948"; chr6 rmsk exon 98172946 98173383 3403 + . gene_id "HERVL_6q16.1c"; transcript_id "HERVL_6q16.1c"; locus "HERVL_6q16.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0618"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### ERVL_6q16.1d ### chr6 rmsk gene 98403875 98410975 . - . gene_id "ERVL_6q16.1d"; transcript_id "ERVL_6q16.1d"; locus "ERVL_6q16.1d"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0175"; model_cov "5724"; model_pct "99.4"; chr6 rmsk exon 98403875 98404279 1362 - . gene_id "ERVL_6q16.1d"; transcript_id "ERVL_6q16.1d"; locus "ERVL_6q16.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0175"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "143"; repStart "0"; chr6 rmsk exon 98404280 98409777 27440 - . gene_id "ERVL_6q16.1d"; transcript_id "ERVL_6q16.1d"; locus "ERVL_6q16.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0175"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "303"; repStart "0"; chr6 rmsk exon 98410165 98410439 1538 - . gene_id "ERVL_6q16.1d"; transcript_id "ERVL_6q16.1d"; locus "ERVL_6q16.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0175"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "44"; repStart "-5443"; chr6 rmsk exon 98410440 98410975 1960 - . gene_id "ERVL_6q16.1d"; transcript_id "ERVL_6q16.1d"; locus "ERVL_6q16.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0175"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "-4"; repStart "0"; ### HERVL18_6q16.1 ### chr6 rmsk gene 98529439 98532477 . + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0074"; model_cov "3094"; model_pct "51.2"; chr6 rmsk exon 98529439 98529599 924 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "-171"; repStart "1"; chr6 rmsk exon 98529611 98530580 3866 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "160"; chr6 rmsk exon 98530580 98530835 1372 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr6 rmsk exon 98530835 98531692 5454 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr6 rmsk exon 98531695 98531788 707 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr6 rmsk exon 98531789 98531846 341 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "5266"; repFamily "ERVL"; repLeft "-781"; repStart "5209"; chr6 rmsk exon 98531848 98531949 558 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr6 rmsk exon 98532127 98532477 2425 + . gene_id "HERVL18_6q16.1"; transcript_id "HERVL18_6q16.1"; locus "HERVL18_6q16.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0074"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6q16.1e ### chr6 rmsk gene 98818520 98820608 . + . gene_id "ERVLE_6q16.1e"; transcript_id "ERVLE_6q16.1e"; locus "ERVLE_6q16.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1676"; model_cov "1664"; model_pct "29.4"; chr6 rmsk exon 98818520 98818625 424 + . gene_id "ERVLE_6q16.1e"; transcript_id "ERVLE_6q16.1e"; locus "ERVLE_6q16.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1676"; repClass "LTR"; repEnd "3723"; repFamily "ERVL"; repLeft "-1944"; repStart "3618"; chr6 rmsk exon 98819072 98820608 3523 + . gene_id "ERVLE_6q16.1e"; transcript_id "ERVLE_6q16.1e"; locus "ERVLE_6q16.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1676"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-365"; repStart "3743"; ### ERVLB4_6q16.1d ### chr6 rmsk gene 98857266 98859501 . - . gene_id "ERVLB4_6q16.1d"; transcript_id "ERVLB4_6q16.1d"; locus "ERVLB4_6q16.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0733"; model_cov "1424"; model_pct "24.9"; chr6 rmsk exon 98857266 98857753 1931 - . gene_id "ERVLB4_6q16.1d"; transcript_id "ERVLB4_6q16.1d"; locus "ERVLB4_6q16.1d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0733"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "1"; repStart "-23"; chr6 rmsk exon 98857754 98857837 6563 - . gene_id "ERVLB4_6q16.1d"; transcript_id "ERVLB4_6q16.1d"; locus "ERVLB4_6q16.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0733"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5636"; repStart "0"; chr6 rmsk exon 98858247 98859501 6563 - . gene_id "ERVLB4_6q16.1d"; transcript_id "ERVLB4_6q16.1d"; locus "ERVLB4_6q16.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0733"; repClass "LTR"; repEnd "5635"; repFamily "ERVL"; repLeft "4289"; repStart "-79"; ### HERVL18_6q16.2 ### chr6 rmsk gene 99019305 99026450 . - . gene_id "HERVL18_6q16.2"; transcript_id "HERVL18_6q16.2"; locus "HERVL18_6q16.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0075"; model_cov "6036"; model_pct "99.8"; chr6 rmsk exon 99019305 99019644 2257 - . gene_id "HERVL18_6q16.2"; transcript_id "HERVL18_6q16.2"; locus "HERVL18_6q16.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0075"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 99019646 99020511 35054 - . gene_id "HERVL18_6q16.2"; transcript_id "HERVL18_6q16.2"; locus "HERVL18_6q16.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0075"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5164"; repStart "0"; chr6 rmsk exon 99020968 99026096 35054 - . gene_id "HERVL18_6q16.2"; transcript_id "HERVL18_6q16.2"; locus "HERVL18_6q16.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0075"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "10"; repStart "-884"; chr6 rmsk exon 99026112 99026450 2265 - . gene_id "HERVL18_6q16.2"; transcript_id "HERVL18_6q16.2"; locus "HERVL18_6q16.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0075"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_6q16.2 ### chr6 rmsk gene 99070246 99072679 . + . gene_id "ERV316A3_6q16.2"; transcript_id "ERV316A3_6q16.2"; locus "ERV316A3_6q16.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1270"; model_cov "1664"; model_pct "31.8"; chr6 rmsk exon 99070246 99070732 1090 + . gene_id "ERV316A3_6q16.2"; transcript_id "ERV316A3_6q16.2"; locus "ERV316A3_6q16.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1270"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "-2948"; repStart "1793"; chr6 rmsk exon 99070980 99071558 876 + . gene_id "ERV316A3_6q16.2"; transcript_id "ERV316A3_6q16.2"; locus "ERV316A3_6q16.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1270"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "-2078"; repStart "2213"; chr6 rmsk exon 99072000 99072240 723 + . gene_id "ERV316A3_6q16.2"; transcript_id "ERV316A3_6q16.2"; locus "ERV316A3_6q16.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1270"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4981"; chr6 rmsk exon 99072245 99072679 1683 + . gene_id "ERV316A3_6q16.2"; transcript_id "ERV316A3_6q16.2"; locus "ERV316A3_6q16.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1270"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HUERSP2_6q16.2 ### chr6 rmsk gene 99251899 99255590 . + . gene_id "HUERSP2_6q16.2"; transcript_id "HUERSP2_6q16.2"; locus "HUERSP2_6q16.2"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0063"; model_cov "2623"; model_pct "84.9"; chr6 rmsk exon 99251899 99252026 396 + . gene_id "HUERSP2_6q16.2"; transcript_id "HUERSP2_6q16.2"; locus "HUERSP2_6q16.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0063"; repClass "LTR"; repEnd "122"; repFamily "ERV1"; repLeft "-2966"; repStart "1"; chr6 rmsk exon 99252375 99253286 4395 + . gene_id "HUERSP2_6q16.2"; transcript_id "HUERSP2_6q16.2"; locus "HUERSP2_6q16.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0063"; repClass "LTR"; repEnd "1173"; repFamily "ERV1"; repLeft "-1915"; repStart "214"; chr6 rmsk exon 99253308 99254761 6762 + . gene_id "HUERSP2_6q16.2"; transcript_id "HUERSP2_6q16.2"; locus "HUERSP2_6q16.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0063"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "1545"; chr6 rmsk exon 99254763 99255590 5608 + . gene_id "HUERSP2_6q16.2"; transcript_id "HUERSP2_6q16.2"; locus "HUERSP2_6q16.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0063"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_6q16.3 ### chr6 rmsk gene 100015355 100017629 . + . gene_id "MER101_6q16.3"; transcript_id "MER101_6q16.3"; locus "MER101_6q16.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0189"; model_cov "2815"; model_pct "42.4"; chr6 rmsk exon 100015355 100015729 1087 + . gene_id "MER101_6q16.3"; transcript_id "MER101_6q16.3"; locus "MER101_6q16.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0189"; repClass "LTR"; repEnd "2758"; repFamily "ERV1"; repLeft "-3881"; repStart "2366"; chr6 rmsk exon 100015860 100016465 2103 + . gene_id "MER101_6q16.3"; transcript_id "MER101_6q16.3"; locus "MER101_6q16.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0189"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3319"; repStart "2753"; chr6 rmsk exon 100016483 100017402 1440 + . gene_id "MER101_6q16.3"; transcript_id "MER101_6q16.3"; locus "MER101_6q16.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0189"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "-1053"; repStart "3978"; chr6 rmsk exon 100017408 100017629 626 + . gene_id "MER101_6q16.3"; transcript_id "MER101_6q16.3"; locus "MER101_6q16.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0189"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "-697"; repStart "5694"; ### ERVL_6q16.3a ### chr6 rmsk gene 100618295 100619992 . + . gene_id "ERVL_6q16.3a"; transcript_id "ERVL_6q16.3a"; locus "ERVL_6q16.3a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0177"; model_cov "1578"; model_pct "27.4"; chr6 rmsk exon 100618295 100619265 1905 + . gene_id "ERVL_6q16.3a"; transcript_id "ERVL_6q16.3a"; locus "ERVL_6q16.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0177"; repClass "LTR"; repEnd "4913"; repFamily "ERVL"; repLeft "-844"; repStart "3791"; chr6 rmsk exon 100619527 100619992 397 + . gene_id "ERVL_6q16.3a"; transcript_id "ERVL_6q16.3a"; locus "ERVL_6q16.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0177"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "-90"; repStart "5211"; ### MER61_6q16.3a ### chr6 rmsk gene 100892202 100899631 . + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0184"; model_cov "4856"; model_pct "93.1"; chr6 rmsk exon 100892202 100892506 1376 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0184"; repClass "LTR"; repEnd "390"; repFamily "ERV1"; repLeft "-37"; repStart "1"; chr6 rmsk exon 100892508 100892597 307 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-5125"; repStart "1"; chr6 rmsk exon 100892941 100893356 1739 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "755"; repFamily "ERV1"; repLeft "-4462"; repStart "356"; chr6 rmsk exon 100893860 100893972 619 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "855"; repFamily "ERV1"; repLeft "-4362"; repStart "743"; chr6 rmsk exon 100893958 100894146 27281 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "1143"; repFamily "ERV1"; repLeft "-4074"; repStart "958"; chr6 rmsk exon 100894417 100894884 27281 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "1608"; repFamily "ERV1"; repLeft "-3609"; repStart "1144"; chr6 rmsk exon 100895185 100896651 27281 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "-2132"; repStart "1609"; chr6 rmsk exon 100896942 100898052 27281 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "4193"; repFamily "ERV1"; repLeft "-1024"; repStart "3086"; chr6 rmsk exon 100898356 100899325 27281 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0184"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4194"; chr6 rmsk exon 100899326 100899631 1356 + . gene_id "MER61_6q16.3a"; transcript_id "MER61_6q16.3a"; locus "MER61_6q16.3a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0184"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; ### HML5_6q16.3 ### chr6 rmsk gene 100944545 100952375 . + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0053"; model_cov "6600"; model_pct "96.5"; chr6 rmsk exon 100944545 100945029 2512 + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0053"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 100945030 100945720 37594 + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0053"; repClass "LTR"; repEnd "699"; repFamily "ERVK"; repLeft "-6138"; repStart "1"; chr6 rmsk exon 100946014 100950156 37594 + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0053"; repClass "LTR"; repEnd "4888"; repFamily "ERVK"; repLeft "-1949"; repStart "700"; chr6 rmsk exon 100950155 100951873 13347 + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0053"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5123"; chr6 rmsk exon 100951874 100952375 2674 + . gene_id "HML5_6q16.3"; transcript_id "HML5_6q16.3"; locus "HML5_6q16.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0053"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER61_6q16.3b ### chr6 rmsk gene 101024666 101027931 . + . gene_id "MER61_6q16.3b"; transcript_id "MER61_6q16.3b"; locus "MER61_6q16.3b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0185"; model_cov "2454"; model_pct "47.0"; chr6 rmsk exon 101024666 101027931 12193 + . gene_id "MER61_6q16.3b"; transcript_id "MER61_6q16.3b"; locus "MER61_6q16.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0185"; repClass "LTR"; repEnd "2444"; repFamily "ERV1"; repLeft "-2773"; repStart "-10"; ### MER61_6q16.3c ### chr6 rmsk gene 101031468 101033027 . + . gene_id "MER61_6q16.3c"; transcript_id "MER61_6q16.3c"; locus "MER61_6q16.3c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0186"; model_cov "1125"; model_pct "21.6"; chr6 rmsk exon 101031468 101031523 6725 + . gene_id "MER61_6q16.3c"; transcript_id "MER61_6q16.3c"; locus "MER61_6q16.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0186"; repClass "LTR"; repEnd "4148"; repFamily "ERV1"; repLeft "-1069"; repStart "4090"; chr6 rmsk exon 101031563 101032598 6725 + . gene_id "MER61_6q16.3c"; transcript_id "MER61_6q16.3c"; locus "MER61_6q16.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0186"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4149"; chr6 rmsk exon 101032599 101033027 2903 + . gene_id "MER61_6q16.3c"; transcript_id "MER61_6q16.3c"; locus "MER61_6q16.3c"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0186"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6q16.3a ### chr6 rmsk gene 101181883 101182486 . - . gene_id "ERV316A3_6q16.3a"; transcript_id "ERV316A3_6q16.3a"; locus "ERV316A3_6q16.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1271"; model_cov "593"; model_pct "11.3"; chr6 rmsk exon 101181883 101182486 891 - . gene_id "ERV316A3_6q16.3a"; transcript_id "ERV316A3_6q16.3a"; locus "ERV316A3_6q16.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1271"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "4361"; repStart "-272"; ### HERVE_6q16.3 ### chr6 rmsk gene 101224789 101231704 . - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0053"; model_cov "6235"; model_pct "79.8"; chr6 rmsk exon 101224789 101224974 1246 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chr6 rmsk exon 101224975 101225150 297 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "43"; repStart "-288"; chr6 rmsk exon 101225154 101225231 319 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "7734"; repStart "0"; chr6 rmsk exon 101225209 101230937 35400 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "6238"; repFamily "ERV1"; repLeft "464"; repStart "-1575"; chr6 rmsk exon 101230980 101231346 2273 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-33"; repStart "-7464"; chr6 rmsk exon 101231347 101231532 1240 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chr6 rmsk exon 101231533 101231704 231 - . gene_id "HERVE_6q16.3"; transcript_id "HERVE_6q16.3"; locus "HERVE_6q16.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0053"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "41"; repStart "-288"; ### HERVH_6q16.3a ### chr6 rmsk gene 102102425 102108211 . + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0574"; model_cov "5428"; model_pct "70.4"; chr6 rmsk exon 102102425 102102534 908 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "341"; chr6 rmsk exon 102102535 102105369 15942 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 102105349 102105498 951 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 102105489 102107165 7111 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3478"; chr6 rmsk exon 102107163 102107381 1295 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr6 rmsk exon 102107380 102107758 2527 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 102107759 102108211 3208 + . gene_id "HERVH_6q16.3a"; transcript_id "HERVH_6q16.3a"; locus "HERVH_6q16.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0574"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6q16.3b ### chr6 rmsk gene 102257665 102261073 . - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1273"; model_cov "3031"; model_pct "58.0"; chr6 rmsk exon 102257665 102257871 647 - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1273"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "1"; repStart "-258"; chr6 rmsk exon 102257873 102258261 995 - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1273"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4813"; repStart "-1"; chr6 rmsk exon 102258295 102258714 417 - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1273"; repClass "LTR"; repEnd "4466"; repFamily "ERVL"; repLeft "3833"; repStart "-760"; chr6 rmsk exon 102259113 102261017 4119 - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1273"; repClass "LTR"; repEnd "2788"; repFamily "ERVL"; repLeft "802"; repStart "-2438"; chr6 rmsk exon 102261018 102261073 311 - . gene_id "ERV316A3_6q16.3b"; transcript_id "ERV316A3_6q16.3b"; locus "ERV316A3_6q16.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1273"; repClass "LTR"; repEnd "58"; repFamily "ERVL"; repLeft "3"; repStart "-404"; ### HERVH_6q16.3b ### chr6 rmsk gene 102292727 102297331 . + . gene_id "HERVH_6q16.3b"; transcript_id "HERVH_6q16.3b"; locus "HERVH_6q16.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0575"; model_cov "6209"; model_pct "80.5"; chr6 rmsk exon 102292727 102293160 2618 + . gene_id "HERVH_6q16.3b"; transcript_id "HERVH_6q16.3b"; locus "HERVH_6q16.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0575"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 102293161 102296517 19142 + . gene_id "HERVH_6q16.3b"; transcript_id "HERVH_6q16.3b"; locus "HERVH_6q16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0575"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "1"; chr6 rmsk exon 102296516 102296895 2629 + . gene_id "HERVH_6q16.3b"; transcript_id "HERVH_6q16.3b"; locus "HERVH_6q16.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0575"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 102296896 102297331 2325 + . gene_id "HERVH_6q16.3b"; transcript_id "HERVH_6q16.3b"; locus "HERVH_6q16.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0575"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_6q16.3d ### chr6 rmsk gene 102352540 102356395 . - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0187"; model_cov "3181"; model_pct "61.0"; chr6 rmsk exon 102352540 102352859 1533 - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0187"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "2"; repStart "-1"; chr6 rmsk exon 102352861 102355618 18519 - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0187"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2461"; repStart "0"; chr6 rmsk exon 102355617 102355803 933 - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0187"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "289"; repStart "-4731"; chr6 rmsk exon 102355822 102356048 971 - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0187"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "3"; repStart "-4986"; chr6 rmsk exon 102356051 102356395 1710 - . gene_id "MER61_6q16.3d"; transcript_id "MER61_6q16.3d"; locus "MER61_6q16.3d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0187"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_6q16.3a ### chr6 rmsk gene 102613573 102618161 . + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0055"; model_cov "3811"; model_pct "58.3"; chr6 rmsk exon 102613573 102614074 1831 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "-59"; repStart "1"; chr6 rmsk exon 102614075 102614294 1532 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "-450"; repFamily "ERV1"; repLeft "-6989"; repStart "-671"; chr6 rmsk exon 102614292 102614963 3310 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-6077"; repStart "-206"; chr6 rmsk exon 102614974 102615373 802 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "4123"; repFamily "ERV1"; repLeft "-2416"; repStart "3915"; chr6 rmsk exon 102615369 102615535 800 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "5388"; repFamily "ERV1"; repLeft "-1151"; repStart "5179"; chr6 rmsk exon 102615536 102616077 3504 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "-275"; repStart "5720"; chr6 rmsk exon 102616532 102617597 1946 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "6327"; repFamily "ERV1"; repLeft "-212"; repStart "4366"; chr6 rmsk exon 102617598 102618161 2893 + . gene_id "HERV4_6q16.3a"; transcript_id "HERV4_6q16.3a"; locus "HERV4_6q16.3a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0055"; repClass "LTR"; repEnd "630"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### ERVL_6q16.3b ### chr6 rmsk gene 102618171 102619160 . + . gene_id "ERVL_6q16.3b"; transcript_id "ERVL_6q16.3b"; locus "ERVL_6q16.3b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0180"; model_cov "752"; model_pct "13.1"; chr6 rmsk exon 102618171 102618559 550 + . gene_id "ERVL_6q16.3b"; transcript_id "ERVL_6q16.3b"; locus "ERVL_6q16.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0180"; repClass "LTR"; repEnd "2311"; repFamily "ERVL"; repLeft "-3446"; repStart "1912"; chr6 rmsk exon 102618585 102618782 404 + . gene_id "ERVL_6q16.3b"; transcript_id "ERVL_6q16.3b"; locus "ERVL_6q16.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0180"; repClass "LTR"; repEnd "2568"; repFamily "ERVL"; repLeft "-3189"; repStart "2363"; chr6 rmsk exon 102619011 102619160 433 + . gene_id "ERVL_6q16.3b"; transcript_id "ERVL_6q16.3b"; locus "ERVL_6q16.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0180"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-2515"; repStart "3094"; ### HERV4_6q16.3b ### chr6 rmsk gene 102631291 102632925 . + . gene_id "HERV4_6q16.3b"; transcript_id "HERV4_6q16.3b"; locus "HERV4_6q16.3b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0056"; model_cov "1115"; model_pct "17.1"; chr6 rmsk exon 102631291 102631826 2840 + . gene_id "HERV4_6q16.3b"; transcript_id "HERV4_6q16.3b"; locus "HERV4_6q16.3b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0056"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 102631827 102632925 3564 + . gene_id "HERV4_6q16.3b"; transcript_id "HERV4_6q16.3b"; locus "HERV4_6q16.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0056"; repClass "LTR"; repEnd "1116"; repFamily "ERV1"; repLeft "-5423"; repStart "1"; ### HERVL_6q16.3a ### chr6 rmsk gene 102870322 102877478 . + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0619"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 102870322 102870423 717 + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0619"; repClass "LTR"; repEnd "102"; repFamily "ERVL"; repLeft "-351"; repStart "1"; chr6 rmsk exon 102870428 102870478 281 + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0619"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-41"; repStart "355"; chr6 rmsk exon 102871066 102876456 41229 + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0619"; repClass "LTR"; repEnd "5459"; repFamily "ERVL"; repLeft "-195"; repStart "1"; chr6 rmsk exon 102876828 102877033 41229 + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0619"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5460"; chr6 rmsk exon 102877034 102877478 3173 + . gene_id "HERVL_6q16.3a"; transcript_id "HERVL_6q16.3a"; locus "HERVL_6q16.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0619"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVL_6q16.3c ### chr6 rmsk gene 103116379 103117504 . + . gene_id "ERVL_6q16.3c"; transcript_id "ERVL_6q16.3c"; locus "ERVL_6q16.3c"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0181"; model_cov "691"; model_pct "12.0"; chr6 rmsk exon 103116379 103116914 3068 + . gene_id "ERVL_6q16.3c"; transcript_id "ERVL_6q16.3c"; locus "ERVL_6q16.3c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0181"; repClass "LTR"; repEnd "5332"; repFamily "ERVL"; repLeft "-425"; repStart "4781"; chr6 rmsk exon 103116903 103117046 825 + . gene_id "ERVL_6q16.3c"; transcript_id "ERVL_6q16.3c"; locus "ERVL_6q16.3c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0181"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5617"; chr6 rmsk exon 103117047 103117504 2131 + . gene_id "ERVL_6q16.3c"; transcript_id "ERVL_6q16.3c"; locus "ERVL_6q16.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0181"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_6q16.3 ### chr6 rmsk gene 103280286 103281531 . + . gene_id "MER4_6q16.3"; transcript_id "MER4_6q16.3"; locus "MER4_6q16.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0338"; model_cov "1726"; model_pct "26.2"; chr6 rmsk exon 103280286 103281531 2740 + . gene_id "MER4_6q16.3"; transcript_id "MER4_6q16.3"; locus "MER4_6q16.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0338"; repClass "LTR"; repEnd "4733"; repFamily "ERV1"; repLeft "-1865"; repStart "3007"; ### MER61_6q16.3e ### chr6 rmsk gene 103877395 103880051 . + . gene_id "MER61_6q16.3e"; transcript_id "MER61_6q16.3e"; locus "MER61_6q16.3e"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0188"; model_cov "1780"; model_pct "34.1"; chr6 rmsk exon 103877395 103877817 2117 + . gene_id "MER61_6q16.3e"; transcript_id "MER61_6q16.3e"; locus "MER61_6q16.3e"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0188"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-3"; repStart "7"; chr6 rmsk exon 103877833 103879615 10906 + . gene_id "MER61_6q16.3e"; transcript_id "MER61_6q16.3e"; locus "MER61_6q16.3e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0188"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-7"; repStart "3430"; chr6 rmsk exon 103879621 103880051 2398 + . gene_id "MER61_6q16.3e"; transcript_id "MER61_6q16.3e"; locus "MER61_6q16.3e"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0188"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HERVL_6q16.3b ### chr6 rmsk gene 104079207 104085494 . + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0620"; model_cov "5500"; model_pct "97.3"; chr6 rmsk exon 104079207 104079672 3025 + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0620"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 104079673 104083498 29796 + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0620"; repClass "LTR"; repEnd "3870"; repFamily "ERVL"; repLeft "-1784"; repStart "1"; chr6 rmsk exon 104083496 104085119 12569 + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0620"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4023"; chr6 rmsk exon 104085120 104085400 1879 + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0620"; repClass "LTR"; repEnd "288"; repFamily "ERVL"; repLeft "-156"; repStart "1"; chr6 rmsk exon 104085455 104085494 306 + . gene_id "HERVL_6q16.3b"; transcript_id "HERVL_6q16.3b"; locus "HERVL_6q16.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0620"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "404"; ### HERVL_6q21a ### chr6 rmsk gene 105216165 105223201 . - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0621"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 105216165 105216334 3142 - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0621"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "286"; repStart "0"; chr6 rmsk exon 105216640 105216917 3142 - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0621"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "1"; repStart "-168"; chr6 rmsk exon 105216918 105217191 43555 - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0621"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5381"; repStart "0"; chr6 rmsk exon 105217494 105222766 43555 - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0621"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "1"; repStart "-274"; chr6 rmsk exon 105222767 105223201 3017 - . gene_id "HERVL_6q21a"; transcript_id "HERVL_6q21a"; locus "HERVL_6q21a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0621"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_6q21a ### chr6 rmsk gene 105450678 105451787 . + . gene_id "ERV316A3_6q21a"; transcript_id "ERV316A3_6q21a"; locus "ERV316A3_6q21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1275"; model_cov "788"; model_pct "15.1"; chr6 rmsk exon 105450678 105451313 749 + . gene_id "ERV316A3_6q21a"; transcript_id "ERV316A3_6q21a"; locus "ERV316A3_6q21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1275"; repClass "LTR"; repEnd "4834"; repFamily "ERVL"; repLeft "-392"; repStart "4046"; chr6 rmsk exon 105451435 105451787 1324 + . gene_id "ERV316A3_6q21a"; transcript_id "ERV316A3_6q21a"; locus "ERV316A3_6q21a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1275"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-119"; repStart "5"; ### ERVLB4_6q21a ### chr6 rmsk gene 105655131 105657166 . + . gene_id "ERVLB4_6q21a"; transcript_id "ERVLB4_6q21a"; locus "ERVLB4_6q21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0734"; model_cov "2057"; model_pct "36.0"; chr6 rmsk exon 105655131 105657166 11052 + . gene_id "ERVLB4_6q21a"; transcript_id "ERVLB4_6q21a"; locus "ERVLB4_6q21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0734"; repClass "LTR"; repEnd "5106"; repFamily "ERVL"; repLeft "-608"; repStart "3049"; ### HERVW_6q21a ### chr6 rmsk gene 106228137 106235814 . + . gene_id "HERVW_6q21a"; transcript_id "HERVW_6q21a"; locus "HERVW_6q21a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0141"; model_cov "6785"; model_pct "78.7"; chr6 rmsk exon 106228137 106228639 3687 + . gene_id "HERVW_6q21a"; transcript_id "HERVW_6q21a"; locus "HERVW_6q21a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0141"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr6 rmsk exon 106228669 106233738 39442 + . gene_id "HERVW_6q21a"; transcript_id "HERVW_6q21a"; locus "HERVW_6q21a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0141"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "-3559"; repStart "6"; chr6 rmsk exon 106233730 106235484 13672 + . gene_id "HERVW_6q21a"; transcript_id "HERVW_6q21a"; locus "HERVW_6q21a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0141"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "6902"; chr6 rmsk exon 106235485 106235814 2614 + . gene_id "HERVW_6q21a"; transcript_id "HERVW_6q21a"; locus "HERVW_6q21a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0141"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER101_6q21 ### chr6 rmsk gene 106837265 106839633 . + . gene_id "MER101_6q21"; transcript_id "MER101_6q21"; locus "MER101_6q21"; category "internal"; intModel "MER101-int"; locid "MER101-int_0190"; model_cov "1841"; model_pct "27.7"; chr6 rmsk exon 106837265 106837483 3466 + . gene_id "MER101_6q21"; transcript_id "MER101_6q21"; locus "MER101_6q21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0190"; repClass "LTR"; repEnd "1542"; repFamily "ERV1"; repLeft "-5097"; repStart "1358"; chr6 rmsk exon 106837797 106838262 3466 + . gene_id "MER101_6q21"; transcript_id "MER101_6q21"; locus "MER101_6q21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0190"; repClass "LTR"; repEnd "1977"; repFamily "ERV1"; repLeft "-4662"; repStart "1543"; chr6 rmsk exon 106838553 106839633 3466 + . gene_id "MER101_6q21"; transcript_id "MER101_6q21"; locus "MER101_6q21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0190"; repClass "LTR"; repEnd "3653"; repFamily "ERV1"; repLeft "-2986"; repStart "2430"; ### ERVLB4_6q21b ### chr6 rmsk gene 106965887 106968539 . + . gene_id "ERVLB4_6q21b"; transcript_id "ERVLB4_6q21b"; locus "ERVLB4_6q21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0735"; model_cov "2152"; model_pct "37.7"; chr6 rmsk exon 106965887 106967247 8970 + . gene_id "ERVLB4_6q21b"; transcript_id "ERVLB4_6q21b"; locus "ERVLB4_6q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0735"; repClass "LTR"; repEnd "4690"; repFamily "ERVL"; repLeft "-1024"; repStart "3229"; chr6 rmsk exon 106967322 106967576 8970 + . gene_id "ERVLB4_6q21b"; transcript_id "ERVLB4_6q21b"; locus "ERVLB4_6q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0735"; repClass "LTR"; repEnd "4966"; repFamily "ERVL"; repLeft "-748"; repStart "4691"; chr6 rmsk exon 106967875 106968035 8970 + . gene_id "ERVLB4_6q21b"; transcript_id "ERVLB4_6q21b"; locus "ERVLB4_6q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0735"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "-581"; repStart "4967"; chr6 rmsk exon 106968319 106968539 8970 + . gene_id "ERVLB4_6q21b"; transcript_id "ERVLB4_6q21b"; locus "ERVLB4_6q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0735"; repClass "LTR"; repEnd "5384"; repFamily "ERVL"; repLeft "-330"; repStart "5134"; ### PABLA_6q21 ### chr6 rmsk gene 107000767 107003574 . + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0059"; model_cov "1653"; model_pct "33.0"; chr6 rmsk exon 107000767 107000963 7897 + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0059"; repClass "LTR"; repEnd "2420"; repFamily "ERV1"; repLeft "-2595"; repStart "2237"; chr6 rmsk exon 107001274 107001575 7897 + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0059"; repClass "LTR"; repEnd "2777"; repFamily "ERV1"; repLeft "-2238"; repStart "2421"; chr6 rmsk exon 107001845 107001965 7897 + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0059"; repClass "LTR"; repEnd "2897"; repFamily "ERV1"; repLeft "-2118"; repStart "2778"; chr6 rmsk exon 107002259 107003022 7897 + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0059"; repClass "LTR"; repEnd "3616"; repFamily "ERV1"; repLeft "-1399"; repStart "2898"; chr6 rmsk exon 107003319 107003574 7897 + . gene_id "PABLA_6q21"; transcript_id "PABLA_6q21"; locus "PABLA_6q21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0059"; repClass "LTR"; repEnd "3894"; repFamily "ERV1"; repLeft "-1121"; repStart "3617"; ### HERVW_6q21b ### chr6 rmsk gene 107299413 107300743 . + . gene_id "HERVW_6q21b"; transcript_id "HERVW_6q21b"; locus "HERVW_6q21b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0142"; model_cov "1013"; model_pct "11.7"; chr6 rmsk exon 107299413 107300137 5614 + . gene_id "HERVW_6q21b"; transcript_id "HERVW_6q21b"; locus "HERVW_6q21b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0142"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "6823"; chr6 rmsk exon 107300128 107300415 2318 + . gene_id "HERVW_6q21b"; transcript_id "HERVW_6q21b"; locus "HERVW_6q21b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0142"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "-3"; repStart "8335"; chr6 rmsk exon 107300418 107300743 2141 + . gene_id "HERVW_6q21b"; transcript_id "HERVW_6q21b"; locus "HERVW_6q21b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0142"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### ERVLE_6q21a ### chr6 rmsk gene 107437877 107440702 . + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1683"; model_cov "2212"; model_pct "39.0"; chr6 rmsk exon 107437877 107438088 364 + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1683"; repClass "LTR"; repEnd "1485"; repFamily "ERVL"; repLeft "-4182"; repStart "1278"; chr6 rmsk exon 107438629 107438876 420 + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1683"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "-3661"; repStart "1666"; chr6 rmsk exon 107439217 107439360 417 + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1683"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "-2339"; repStart "3182"; chr6 rmsk exon 107439409 107440471 1358 + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1683"; repClass "LTR"; repEnd "4585"; repFamily "ERVL"; repLeft "-1082"; repStart "3263"; chr6 rmsk exon 107440529 107440702 520 + . gene_id "ERVLE_6q21a"; transcript_id "ERVLE_6q21a"; locus "ERVLE_6q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1683"; repClass "LTR"; repEnd "4896"; repFamily "ERVL"; repLeft "-771"; repStart "4699"; ### ERVLE_6q21b ### chr6 rmsk gene 107684799 107685463 . + . gene_id "ERVLE_6q21b"; transcript_id "ERVLE_6q21b"; locus "ERVLE_6q21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1684"; model_cov "789"; model_pct "13.9"; chr6 rmsk exon 107684799 107685062 344 + . gene_id "ERVLE_6q21b"; transcript_id "ERVLE_6q21b"; locus "ERVLE_6q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1684"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "-5039"; repStart "342"; chr6 rmsk exon 107685042 107685463 389 + . gene_id "ERVLE_6q21b"; transcript_id "ERVLE_6q21b"; locus "ERVLE_6q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1684"; repClass "LTR"; repEnd "1090"; repFamily "ERVL"; repLeft "-4577"; repStart "587"; ### ERVL_6q21 ### chr6 rmsk gene 108087035 108088799 . + . gene_id "ERVL_6q21"; transcript_id "ERVL_6q21"; locus "ERVL_6q21"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0183"; model_cov "1015"; model_pct "17.6"; chr6 rmsk exon 108087035 108087715 5642 + . gene_id "ERVL_6q21"; transcript_id "ERVL_6q21"; locus "ERVL_6q21"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0183"; repClass "LTR"; repEnd "5447"; repFamily "ERVL"; repLeft "-310"; repStart "4740"; chr6 rmsk exon 108087748 108087804 5642 + . gene_id "ERVL_6q21"; transcript_id "ERVL_6q21"; locus "ERVL_6q21"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0183"; repClass "LTR"; repEnd "5497"; repFamily "ERVL"; repLeft "-260"; repStart "5448"; chr6 rmsk exon 108088111 108088363 5642 + . gene_id "ERVL_6q21"; transcript_id "ERVL_6q21"; locus "ERVL_6q21"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0183"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5498"; chr6 rmsk exon 108088378 108088799 1761 + . gene_id "ERVL_6q21"; transcript_id "ERVL_6q21"; locus "ERVL_6q21"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0183"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-25"; repStart "88"; ### MER41_6q21a ### chr6 rmsk gene 108301121 108302964 . - . gene_id "MER41_6q21a"; transcript_id "MER41_6q21a"; locus "MER41_6q21a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0225"; model_cov "1306"; model_pct "22.0"; chr6 rmsk exon 108301121 108301373 1698 - . gene_id "MER41_6q21a"; transcript_id "MER41_6q21a"; locus "MER41_6q21a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0225"; repClass "LTR"; repEnd "263"; repFamily "ERV1"; repLeft "1"; repStart "-291"; chr6 rmsk exon 108301374 108301946 9340 - . gene_id "MER41_6q21a"; transcript_id "MER41_6q21a"; locus "MER41_6q21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0225"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5379"; repStart "-2"; chr6 rmsk exon 108302243 108302964 9340 - . gene_id "MER41_6q21a"; transcript_id "MER41_6q21a"; locus "MER41_6q21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0225"; repClass "LTR"; repEnd "5378"; repFamily "ERV1"; repLeft "4637"; repStart "-568"; ### ERVLE_6q21c ### chr6 rmsk gene 109356416 109361483 . + . gene_id "ERVLE_6q21c"; transcript_id "ERVLE_6q21c"; locus "ERVLE_6q21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1685"; model_cov "4363"; model_pct "77.0"; chr6 rmsk exon 109356416 109356453 640 + . gene_id "ERVLE_6q21c"; transcript_id "ERVLE_6q21c"; locus "ERVLE_6q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1685"; repClass "LTR"; repEnd "33"; repFamily "ERVL"; repLeft "-5634"; repStart "4"; chr6 rmsk exon 109356908 109357376 640 + . gene_id "ERVLE_6q21c"; transcript_id "ERVLE_6q21c"; locus "ERVLE_6q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1685"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-5153"; repStart "34"; chr6 rmsk exon 109357377 109359918 10629 + . gene_id "ERVLE_6q21c"; transcript_id "ERVLE_6q21c"; locus "ERVLE_6q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1685"; repClass "LTR"; repEnd "3932"; repFamily "ERVL"; repLeft "-1735"; repStart "1366"; chr6 rmsk exon 109360275 109361483 10629 + . gene_id "ERVLE_6q21c"; transcript_id "ERVLE_6q21c"; locus "ERVLE_6q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1685"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-446"; repStart "3933"; ### ERVLB4_6q21c ### chr6 rmsk gene 109685861 109688604 . + . gene_id "ERVLB4_6q21c"; transcript_id "ERVLB4_6q21c"; locus "ERVLB4_6q21c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0736"; model_cov "2212"; model_pct "38.7"; chr6 rmsk exon 109685861 109687201 1872 + . gene_id "ERVLB4_6q21c"; transcript_id "ERVLB4_6q21c"; locus "ERVLB4_6q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0736"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "-2089"; repStart "2352"; chr6 rmsk exon 109687857 109688214 962 + . gene_id "ERVLB4_6q21c"; transcript_id "ERVLB4_6q21c"; locus "ERVLB4_6q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0736"; repClass "LTR"; repEnd "4596"; repFamily "ERVL"; repLeft "-1118"; repStart "4239"; chr6 rmsk exon 109688239 109688604 673 + . gene_id "ERVLB4_6q21c"; transcript_id "ERVLB4_6q21c"; locus "ERVLB4_6q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0736"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "-1037"; repStart "4095"; ### ERV316A3_6q21b ### chr6 rmsk gene 109688599 109689756 . + . gene_id "ERV316A3_6q21b"; transcript_id "ERV316A3_6q21b"; locus "ERV316A3_6q21b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1277"; model_cov "606"; model_pct "11.6"; chr6 rmsk exon 109688599 109688789 434 + . gene_id "ERV316A3_6q21b"; transcript_id "ERV316A3_6q21b"; locus "ERV316A3_6q21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1277"; repClass "LTR"; repEnd "4708"; repFamily "ERVL"; repLeft "-518"; repStart "4504"; chr6 rmsk exon 109688891 109689310 762 + . gene_id "ERV316A3_6q21b"; transcript_id "ERV316A3_6q21b"; locus "ERV316A3_6q21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1277"; repClass "LTR"; repEnd "4791"; repFamily "ERVL"; repLeft "-435"; repStart "4389"; chr6 rmsk exon 109689312 109689756 1503 + . gene_id "ERV316A3_6q21b"; transcript_id "ERV316A3_6q21b"; locus "ERV316A3_6q21b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1277"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_6q21b ### chr6 rmsk gene 109849277 109852558 . + . gene_id "HERVL_6q21b"; transcript_id "HERVL_6q21b"; locus "HERVL_6q21b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0622"; model_cov "3040"; model_pct "53.8"; chr6 rmsk exon 109849277 109852093 12297 + . gene_id "HERVL_6q21b"; transcript_id "HERVL_6q21b"; locus "HERVL_6q21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0622"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2614"; chr6 rmsk exon 109852094 109852558 3198 + . gene_id "HERVL_6q21b"; transcript_id "HERVL_6q21b"; locus "HERVL_6q21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0622"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_6q21a ### chr6 rmsk gene 109855775 109861579 . - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0576"; model_cov "5056"; model_pct "65.6"; chr6 rmsk exon 109855775 109856184 2740 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 109856185 109856564 2501 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 109856565 109856779 1311 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "5600"; repStart "-1896"; chr6 rmsk exon 109856784 109857443 4593 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr6 rmsk exon 109857446 109857962 3327 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 109857953 109861165 21063 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr6 rmsk exon 109861168 109861579 2769 - . gene_id "HERVH_6q21a"; transcript_id "HERVH_6q21a"; locus "HERVH_6q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0576"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_6q21 ### chr6 rmsk gene 109876944 109882777 . + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0189"; model_cov "2323"; model_pct "44.5"; chr6 rmsk exon 109876944 109876991 1825 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0189"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "299"; chr6 rmsk exon 109876992 109877609 2402 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "708"; repFamily "ERV1"; repLeft "-4509"; repStart "1"; chr6 rmsk exon 109877639 109877660 304 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "1341"; repFamily "ERV1"; repLeft "-3876"; repStart "1320"; chr6 rmsk exon 109878152 109878176 304 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1342"; chr6 rmsk exon 109878173 109879222 8876 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "2521"; repFamily "ERV1"; repLeft "-2696"; repStart "1408"; chr6 rmsk exon 109879985 109880115 8876 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "-2564"; repStart "2522"; chr6 rmsk exon 109881899 109881951 8876 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "2733"; repFamily "ERV1"; repLeft "-2484"; repStart "2654"; chr6 rmsk exon 109882520 109882777 8876 + . gene_id "MER61_6q21"; transcript_id "MER61_6q21"; locus "MER61_6q21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0189"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "-2231"; repStart "2734"; ### HERV3_6q21 ### chr6 rmsk gene 109886705 109894640 . - . gene_id "HERV3_6q21"; transcript_id "HERV3_6q21"; locus "HERV3_6q21"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0029"; model_cov "7407"; model_pct "87.9"; chr6 rmsk exon 109886705 109886752 335 - . gene_id "HERV3_6q21"; transcript_id "HERV3_6q21"; locus "HERV3_6q21"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0029"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "549"; repStart "0"; chr6 rmsk exon 109886753 109888045 4627 - . gene_id "HERV3_6q21"; transcript_id "HERV3_6q21"; locus "HERV3_6q21"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0029"; repClass "LTR"; repEnd "7584"; repFamily "ERV1"; repLeft "6324"; repStart "-842"; chr6 rmsk exon 109888117 109894249 41024 - . gene_id "HERV3_6q21"; transcript_id "HERV3_6q21"; locus "HERV3_6q21"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0029"; repClass "LTR"; repEnd "6148"; repFamily "ERV1"; repLeft "1"; repStart "-2278"; chr6 rmsk exon 109894250 109894640 2279 - . gene_id "HERV3_6q21"; transcript_id "HERV3_6q21"; locus "HERV3_6q21"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0029"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "184"; repStart "0"; ### ERV316A3_6q21c ### chr6 rmsk gene 110091041 110092078 . + . gene_id "ERV316A3_6q21c"; transcript_id "ERV316A3_6q21c"; locus "ERV316A3_6q21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1279"; model_cov "608"; model_pct "11.6"; chr6 rmsk exon 110091041 110091456 1729 + . gene_id "ERV316A3_6q21c"; transcript_id "ERV316A3_6q21c"; locus "ERV316A3_6q21c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1279"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr6 rmsk exon 110091501 110091955 1464 + . gene_id "ERV316A3_6q21c"; transcript_id "ERV316A3_6q21c"; locus "ERV316A3_6q21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1279"; repClass "LTR"; repEnd "752"; repFamily "ERVL"; repLeft "-4474"; repStart "280"; chr6 rmsk exon 110091962 110092078 445 + . gene_id "ERV316A3_6q21c"; transcript_id "ERV316A3_6q21c"; locus "ERV316A3_6q21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1279"; repClass "LTR"; repEnd "4034"; repFamily "ERVL"; repLeft "-1192"; repStart "3898"; ### MER41_6q21b ### chr6 rmsk gene 110488048 110491199 . + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0226"; model_cov "3877"; model_pct "65.2"; chr6 rmsk exon 110488048 110488595 4052 + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0226"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 110488597 110490314 5655 + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0226"; repClass "LTR"; repEnd "1018"; repFamily "ERV1"; repLeft "-4928"; repStart "-1589"; chr6 rmsk exon 110490305 110490542 1622 + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0226"; repClass "LTR"; repEnd "1425"; repFamily "ERV1"; repLeft "-4521"; repStart "1190"; chr6 rmsk exon 110490537 110490738 1430 + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0226"; repClass "LTR"; repEnd "3062"; repFamily "ERV1"; repLeft "-2884"; repStart "2862"; chr6 rmsk exon 110490739 110491199 1861 + . gene_id "MER41_6q21b"; transcript_id "MER41_6q21b"; locus "MER41_6q21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0226"; repClass "LTR"; repEnd "3604"; repFamily "ERV1"; repLeft "-2342"; repStart "2769"; ### HML3_6q21a ### chr6 rmsk gene 110499174 110506068 . + . gene_id "HML3_6q21a"; transcript_id "HML3_6q21a"; locus "HML3_6q21a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0110"; model_cov "6019"; model_pct "100.0"; chr6 rmsk exon 110499174 110499683 4389 + . gene_id "HML3_6q21a"; transcript_id "HML3_6q21a"; locus "HML3_6q21a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0110"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "2"; chr6 rmsk exon 110499684 110500000 2335 + . gene_id "HML3_6q21a"; transcript_id "HML3_6q21a"; locus "HML3_6q21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0110"; repClass "LTR"; repEnd "314"; repFamily "ERVK"; repLeft "-5707"; repStart "1"; chr6 rmsk exon 110500001 110505558 44899 + . gene_id "HML3_6q21a"; transcript_id "HML3_6q21a"; locus "HML3_6q21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0110"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "315"; chr6 rmsk exon 110505559 110506068 4223 + . gene_id "HML3_6q21a"; transcript_id "HML3_6q21a"; locus "HML3_6q21a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0110"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER34B_6q21 ### chr6 rmsk gene 110581133 110582977 . + . gene_id "MER34B_6q21"; transcript_id "MER34B_6q21"; locus "MER34B_6q21"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0127"; model_cov "702"; model_pct "13.1"; chr6 rmsk exon 110581133 110581215 418 + . gene_id "MER34B_6q21"; transcript_id "MER34B_6q21"; locus "MER34B_6q21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0127"; repClass "LTR"; repEnd "2896"; repFamily "ERV1"; repLeft "-2460"; repStart "2806"; chr6 rmsk exon 110582345 110582977 1184 + . gene_id "MER34B_6q21"; transcript_id "MER34B_6q21"; locus "MER34B_6q21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0127"; repClass "LTR"; repEnd "3477"; repFamily "ERV1"; repLeft "-1879"; repStart "2865"; ### HML3_6q21b ### chr6 rmsk gene 110916754 110923087 . + . gene_id "HML3_6q21b"; transcript_id "HML3_6q21b"; locus "HML3_6q21b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0111"; model_cov "5283"; model_pct "87.7"; chr6 rmsk exon 110916754 110917251 3817 + . gene_id "HML3_6q21b"; transcript_id "HML3_6q21b"; locus "HML3_6q21b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0111"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 110917252 110917869 4818 + . gene_id "HML3_6q21b"; transcript_id "HML3_6q21b"; locus "HML3_6q21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0111"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "-5398"; repStart "1"; chr6 rmsk exon 110917871 110922603 38082 + . gene_id "HML3_6q21b"; transcript_id "HML3_6q21b"; locus "HML3_6q21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0111"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1360"; chr6 rmsk exon 110922604 110923087 3648 + . gene_id "HML3_6q21b"; transcript_id "HML3_6q21b"; locus "HML3_6q21b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0111"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVW_6q21c ### chr6 rmsk gene 111131018 111138073 . + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0143"; model_cov "6343"; model_pct "73.5"; chr6 rmsk exon 111131018 111131478 2774 + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0143"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr6 rmsk exon 111131479 111137433 45534 + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0143"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr6 rmsk exon 111137427 111137465 267 + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0143"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr6 rmsk exon 111137456 111137742 2072 + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0143"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "-4"; repStart "8335"; chr6 rmsk exon 111137747 111138073 2664 + . gene_id "HERVW_6q21c"; transcript_id "HERVW_6q21c"; locus "HERVW_6q21c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0143"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "-453"; repStart "1"; ### LTR25_6q21 ### chr6 rmsk gene 111161463 111166352 . - . gene_id "LTR25_6q21"; transcript_id "LTR25_6q21"; locus "LTR25_6q21"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0054"; model_cov "5552"; model_pct "77.2"; chr6 rmsk exon 111161463 111163146 16739 - . gene_id "LTR25_6q21"; transcript_id "LTR25_6q21"; locus "LTR25_6q21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0054"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5545"; repStart "-1"; chr6 rmsk exon 111163451 111164477 16739 - . gene_id "LTR25_6q21"; transcript_id "LTR25_6q21"; locus "LTR25_6q21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0054"; repClass "LTR"; repEnd "5544"; repFamily "ERV1"; repLeft "4489"; repStart "-1644"; chr6 rmsk exon 111164777 111166352 16739 - . gene_id "LTR25_6q21"; transcript_id "LTR25_6q21"; locus "LTR25_6q21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0054"; repClass "LTR"; repEnd "4488"; repFamily "ERV1"; repLeft "1633"; repStart "-2700"; ### HARLEQUIN_6q21 ### chr6 rmsk gene 111284171 111290629 . - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0090"; model_cov "5556"; model_pct "80.6"; chr6 rmsk exon 111284171 111284650 3957 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 111284651 111288187 23344 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr6 rmsk exon 111288187 111289150 6425 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6 rmsk exon 111289137 111289771 4732 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "262"; repStart "-6003"; chr6 rmsk exon 111289767 111290144 2531 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr6 rmsk exon 111290145 111290629 3767 - . gene_id "HARLEQUIN_6q21"; transcript_id "HARLEQUIN_6q21"; locus "HARLEQUIN_6q21"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0090"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_6q21c ### chr6 rmsk gene 111916163 111917846 . - . gene_id "HERVL_6q21c"; transcript_id "HERVL_6q21c"; locus "HERVL_6q21c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0623"; model_cov "1244"; model_pct "22.0"; chr6 rmsk exon 111916163 111916607 3117 - . gene_id "HERVL_6q21c"; transcript_id "HERVL_6q21c"; locus "HERVL_6q21c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0623"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "1"; repStart "-12"; chr6 rmsk exon 111916608 111917846 9157 - . gene_id "HERVL_6q21c"; transcript_id "HERVL_6q21c"; locus "HERVL_6q21c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0623"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4410"; repStart "0"; ### ERV316A3_6q21d ### chr6 rmsk gene 112005510 112006924 . - . gene_id "ERV316A3_6q21d"; transcript_id "ERV316A3_6q21d"; locus "ERV316A3_6q21d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1280"; model_cov "1321"; model_pct "25.3"; chr6 rmsk exon 112005510 112006806 3748 - . gene_id "ERV316A3_6q21d"; transcript_id "ERV316A3_6q21d"; locus "ERV316A3_6q21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1280"; repClass "LTR"; repEnd "2782"; repFamily "ERVL"; repLeft "1579"; repStart "-2444"; chr6 rmsk exon 112006806 112006924 600 - . gene_id "ERV316A3_6q21d"; transcript_id "ERV316A3_6q21d"; locus "ERV316A3_6q21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1280"; repClass "LTR"; repEnd "899"; repFamily "ERVL"; repLeft "781"; repStart "-4327"; ### HML3_6q21c ### chr6 rmsk gene 113263409 113268482 . - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0112"; model_cov "3818"; model_pct "63.4"; chr6 rmsk exon 113263409 113263920 4026 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 113263921 113265101 7452 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4774"; repStart "0"; chr6 rmsk exon 113265103 113265469 5134 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "4354"; repFamily "ERVK"; repLeft "3999"; repStart "-1667"; chr6 rmsk exon 113265770 113266045 5134 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "3998"; repFamily "ERVK"; repLeft "3723"; repStart "-2023"; chr6 rmsk exon 113266046 113267408 10855 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1436"; repStart "-3223"; chr6 rmsk exon 113267407 113267983 4349 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr6 rmsk exon 113267984 113268482 3989 - . gene_id "HML3_6q21c"; transcript_id "HML3_6q21c"; locus "HML3_6q21c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0112"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "12"; repStart "0"; ### HERVH_6q21b ### chr6 rmsk gene 114011775 114018145 . - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0577"; model_cov "5449"; model_pct "70.6"; chr6 rmsk exon 114011775 114012192 3851 - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0577"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "45"; repStart "0"; chr6 rmsk exon 114012247 114012285 3851 - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0577"; repClass "LTR"; repEnd "44"; repFamily "ERV1"; repLeft "2"; repStart "-420"; chr6 rmsk exon 114012286 114012715 2589 - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0577"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr6 rmsk exon 114012720 114017712 12596 - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0577"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "1"; repStart "-2693"; chr6 rmsk exon 114017713 114018145 3489 - . gene_id "HERVH_6q21b"; transcript_id "HERVH_6q21b"; locus "HERVH_6q21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0577"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6q22.1a ### chr6 rmsk gene 114422369 114428297 . - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0578"; model_cov "4902"; model_pct "63.6"; chr6 rmsk exon 114422369 114422421 488 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "420"; repStart "0"; chr6 rmsk exon 114422439 114422889 3468 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 114422890 114423269 2563 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 114423268 114423461 1299 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5623"; repStart "-1894"; chr6 rmsk exon 114423492 114423511 1299 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "5622"; repFamily "ERV1"; repLeft "5597"; repStart "-2091"; chr6 rmsk exon 114423509 114424166 4266 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 114424169 114424664 3335 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr6 rmsk exon 114424664 114424811 846 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 114424806 114427844 14230 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 114427847 114428297 3403 - . gene_id "HERVH_6q22.1a"; transcript_id "HERVH_6q22.1a"; locus "HERVH_6q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0578"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_6q22.1a ### chr6 rmsk gene 114651846 114653791 . + . gene_id "ERV316A3_6q22.1a"; transcript_id "ERV316A3_6q22.1a"; locus "ERV316A3_6q22.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1282"; model_cov "1170"; model_pct "22.4"; chr6 rmsk exon 114651846 114652265 1220 + . gene_id "ERV316A3_6q22.1a"; transcript_id "ERV316A3_6q22.1a"; locus "ERV316A3_6q22.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1282"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-79"; repStart "-57"; chr6 rmsk exon 114652262 114652374 342 + . gene_id "ERV316A3_6q22.1a"; transcript_id "ERV316A3_6q22.1a"; locus "ERV316A3_6q22.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1282"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "324"; chr6 rmsk exon 114652390 114653568 2899 + . gene_id "ERV316A3_6q22.1a"; transcript_id "ERV316A3_6q22.1a"; locus "ERV316A3_6q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1282"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "-54"; repStart "4002"; chr6 rmsk exon 114653689 114653791 427 + . gene_id "ERV316A3_6q22.1a"; transcript_id "ERV316A3_6q22.1a"; locus "ERV316A3_6q22.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1282"; repClass "LTR"; repEnd "167"; repFamily "ERVL"; repLeft "-271"; repStart "65"; ### HERVW_6q22.1 ### chr6 rmsk gene 114998386 115001839 . + . gene_id "HERVW_6q22.1"; transcript_id "HERVW_6q22.1"; locus "HERVW_6q22.1"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0145"; model_cov "4100"; model_pct "47.5"; chr6 rmsk exon 114998386 115000000 2939 + . gene_id "HERVW_6q22.1"; transcript_id "HERVW_6q22.1"; locus "HERVW_6q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0145"; repClass "LTR"; repEnd "2239"; repFamily "ERV1"; repLeft "-6387"; repStart "1"; chr6 rmsk exon 115000002 115001524 8388 + . gene_id "HERVW_6q22.1"; transcript_id "HERVW_6q22.1"; locus "HERVW_6q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0145"; repClass "LTR"; repEnd "3776"; repFamily "ERV1"; repLeft "-4850"; repStart "2241"; chr6 rmsk exon 115001517 115001839 1439 + . gene_id "HERVW_6q22.1"; transcript_id "HERVW_6q22.1"; locus "HERVW_6q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0145"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8299"; ### HERVH_6q22.1b ### chr6 rmsk gene 115031793 115037619 . + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0579"; model_cov "4908"; model_pct "63.6"; chr6 rmsk exon 115031793 115032243 3446 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 115032246 115035298 17137 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 115035278 115035423 817 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 115035423 115035918 3364 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr6 rmsk exon 115035921 115036574 4267 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 115036576 115036791 1378 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 115036790 115037169 2557 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 115037170 115037619 3336 + . gene_id "HERVH_6q22.1b"; transcript_id "HERVH_6q22.1b"; locus "HERVH_6q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0579"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV9_6q22.1 ### chr6 rmsk gene 115231642 115241401 . - . gene_id "HERV9_6q22.1"; transcript_id "HERV9_6q22.1"; locus "HERV9_6q22.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0073"; model_cov "8435"; model_pct "100.0"; chr6 rmsk exon 115231642 115232319 4497 - . gene_id "HERV9_6q22.1"; transcript_id "HERV9_6q22.1"; locus "HERV9_6q22.1"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0073"; repClass "LTR"; repEnd "1109"; repFamily "ERV1"; repLeft "370"; repStart "-145"; chr6 rmsk exon 115232320 115240718 69654 - . gene_id "HERV9_6q22.1"; transcript_id "HERV9_6q22.1"; locus "HERV9_6q22.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0073"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 115240719 115241401 5048 - . gene_id "HERV9_6q22.1"; transcript_id "HERV9_6q22.1"; locus "HERV9_6q22.1"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0073"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "540"; repStart "0"; ### ERVLE_6q22.1a ### chr6 rmsk gene 115719259 115720275 . + . gene_id "ERVLE_6q22.1a"; transcript_id "ERVLE_6q22.1a"; locus "ERVLE_6q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1689"; model_cov "919"; model_pct "16.2"; chr6 rmsk exon 115719259 115719852 728 + . gene_id "ERVLE_6q22.1a"; transcript_id "ERVLE_6q22.1a"; locus "ERVLE_6q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1689"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "-1235"; repStart "3807"; chr6 rmsk exon 115719980 115720275 444 + . gene_id "ERVLE_6q22.1a"; transcript_id "ERVLE_6q22.1a"; locus "ERVLE_6q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1689"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "-734"; repStart "4639"; ### ERVLE_6q22.1b ### chr6 rmsk gene 116999283 117001133 . - . gene_id "ERVLE_6q22.1b"; transcript_id "ERVLE_6q22.1b"; locus "ERVLE_6q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1690"; model_cov "900"; model_pct "15.9"; chr6 rmsk exon 116999283 116999523 703 - . gene_id "ERVLE_6q22.1b"; transcript_id "ERVLE_6q22.1b"; locus "ERVLE_6q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1690"; repClass "LTR"; repEnd "3947"; repFamily "ERVL"; repLeft "3711"; repStart "-1720"; chr6 rmsk exon 117000424 117000852 826 - . gene_id "ERVLE_6q22.1b"; transcript_id "ERVLE_6q22.1b"; locus "ERVLE_6q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1690"; repClass "LTR"; repEnd "2210"; repFamily "ERVL"; repLeft "1782"; repStart "-3457"; chr6 rmsk exon 117000958 117001133 295 - . gene_id "ERVLE_6q22.1b"; transcript_id "ERVLE_6q22.1b"; locus "ERVLE_6q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1690"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "1358"; repStart "-4073"; ### ERVLE_6q22.1c ### chr6 rmsk gene 117029557 117034366 . + . gene_id "ERVLE_6q22.1c"; transcript_id "ERVLE_6q22.1c"; locus "ERVLE_6q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1691"; model_cov "3488"; model_pct "61.5"; chr6 rmsk exon 117029557 117029960 749 + . gene_id "ERVLE_6q22.1c"; transcript_id "ERVLE_6q22.1c"; locus "ERVLE_6q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1691"; repClass "LTR"; repEnd "1549"; repFamily "ERVL"; repLeft "-4118"; repStart "1144"; chr6 rmsk exon 117030063 117030963 1271 + . gene_id "ERVLE_6q22.1c"; transcript_id "ERVLE_6q22.1c"; locus "ERVLE_6q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1691"; repClass "LTR"; repEnd "2622"; repFamily "ERVL"; repLeft "-3045"; repStart "1712"; chr6 rmsk exon 117031854 117032320 835 + . gene_id "ERVLE_6q22.1c"; transcript_id "ERVLE_6q22.1c"; locus "ERVLE_6q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1691"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "-2426"; repStart "2738"; chr6 rmsk exon 117032707 117034366 2051 + . gene_id "ERVLE_6q22.1c"; transcript_id "ERVLE_6q22.1c"; locus "ERVLE_6q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1691"; repClass "LTR"; repEnd "4997"; repFamily "ERVL"; repLeft "-670"; repStart "3327"; ### ERV316A3_6q22.1b ### chr6 rmsk gene 117049587 117055075 . - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1283"; model_cov "2969"; model_pct "56.8"; chr6 rmsk exon 117049587 117049998 1281 - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1283"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "38"; repStart "-1"; chr6 rmsk exon 117050006 117051034 2992 - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1283"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "4202"; repStart "-8"; chr6 rmsk exon 117051393 117051892 2280 - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1283"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "3704"; repStart "-1019"; chr6 rmsk exon 117052294 117053608 2159 - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1283"; repClass "LTR"; repEnd "3568"; repFamily "ERVL"; repLeft "2243"; repStart "-1658"; chr6 rmsk exon 117054963 117055075 402 - . gene_id "ERV316A3_6q22.1b"; transcript_id "ERV316A3_6q22.1b"; locus "ERV316A3_6q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1283"; repClass "LTR"; repEnd "2020"; repFamily "ERVL"; repLeft "1895"; repStart "-3206"; ### ERV316A3_6q22.1c ### chr6 rmsk gene 117222732 117228538 . - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1285"; model_cov "3137"; model_pct "60.0"; chr6 rmsk exon 117222732 117223086 494 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "51"; repStart "-9"; chr6 rmsk exon 117223208 117223764 924 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "4660"; repStart "-46"; chr6 rmsk exon 117224983 117225357 590 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "4379"; repFamily "ERVL"; repLeft "3992"; repStart "-847"; chr6 rmsk exon 117225383 117226104 1147 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "3756"; repFamily "ERVL"; repLeft "3019"; repStart "-1470"; chr6 rmsk exon 117226493 117226709 509 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "3021"; repFamily "ERVL"; repLeft "2828"; repStart "-2205"; chr6 rmsk exon 117226713 117227332 1218 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "2014"; repStart "-2564"; chr6 rmsk exon 117227385 117228052 1320 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "1879"; repFamily "ERVL"; repLeft "1227"; repStart "-3347"; chr6 rmsk exon 117228384 117228538 584 - . gene_id "ERV316A3_6q22.1c"; transcript_id "ERV316A3_6q22.1c"; locus "ERV316A3_6q22.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1285"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "1"; repStart "-298"; ### ERV316A3_6q22.1d ### chr6 rmsk gene 117280647 117283625 . - . gene_id "ERV316A3_6q22.1d"; transcript_id "ERV316A3_6q22.1d"; locus "ERV316A3_6q22.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1286"; model_cov "1956"; model_pct "37.4"; chr6 rmsk exon 117280647 117280685 285 - . gene_id "ERV316A3_6q22.1d"; transcript_id "ERV316A3_6q22.1d"; locus "ERV316A3_6q22.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1286"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "442"; repStart "0"; chr6 rmsk exon 117280686 117281531 5741 - . gene_id "ERV316A3_6q22.1d"; transcript_id "ERV316A3_6q22.1d"; locus "ERV316A3_6q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1286"; repClass "LTR"; repEnd "2366"; repFamily "ERVL"; repLeft "1571"; repStart "-2860"; chr6 rmsk exon 117282185 117282252 5741 - . gene_id "ERV316A3_6q22.1d"; transcript_id "ERV316A3_6q22.1d"; locus "ERV316A3_6q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1286"; repClass "LTR"; repEnd "1570"; repFamily "ERVL"; repLeft "1512"; repStart "-3656"; chr6 rmsk exon 117282626 117283625 5741 - . gene_id "ERV316A3_6q22.1d"; transcript_id "ERV316A3_6q22.1d"; locus "ERV316A3_6q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1286"; repClass "LTR"; repEnd "1511"; repFamily "ERVL"; repLeft "408"; repStart "-3715"; ### MER41_6q22.1 ### chr6 rmsk gene 117473177 117476926 . - . gene_id "MER41_6q22.1"; transcript_id "MER41_6q22.1"; locus "MER41_6q22.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0228"; model_cov "2644"; model_pct "44.5"; chr6 rmsk exon 117473177 117473811 4192 - . gene_id "MER41_6q22.1"; transcript_id "MER41_6q22.1"; locus "MER41_6q22.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0228"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 117473812 117474490 15954 - . gene_id "MER41_6q22.1"; transcript_id "MER41_6q22.1"; locus "MER41_6q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0228"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5272"; repStart "0"; chr6 rmsk exon 117474725 117476016 15954 - . gene_id "MER41_6q22.1"; transcript_id "MER41_6q22.1"; locus "MER41_6q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0228"; repClass "LTR"; repEnd "5271"; repFamily "ERV1"; repLeft "3924"; repStart "-675"; chr6 rmsk exon 117476308 117476926 15954 - . gene_id "MER41_6q22.1"; transcript_id "MER41_6q22.1"; locus "MER41_6q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0228"; repClass "LTR"; repEnd "3923"; repFamily "ERV1"; repLeft "3300"; repStart "-2023"; ### MER4_6q22.1a ### chr6 rmsk gene 117611860 117615272 . + . gene_id "MER4_6q22.1a"; transcript_id "MER4_6q22.1a"; locus "MER4_6q22.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0340"; model_cov "2568"; model_pct "38.9"; chr6 rmsk exon 117611860 117612307 3347 + . gene_id "MER4_6q22.1a"; transcript_id "MER4_6q22.1a"; locus "MER4_6q22.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0340"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr6 rmsk exon 117612311 117612584 6833 + . gene_id "MER4_6q22.1a"; transcript_id "MER4_6q22.1a"; locus "MER4_6q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0340"; repClass "LTR"; repEnd "301"; repFamily "ERV1"; repLeft "-6297"; repStart "1"; chr6 rmsk exon 117613092 117615272 6833 + . gene_id "MER4_6q22.1a"; transcript_id "MER4_6q22.1a"; locus "MER4_6q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0340"; repClass "LTR"; repEnd "2539"; repFamily "ERV1"; repLeft "-4059"; repStart "271"; ### HERVIP10FH_6q22.1 ### chr6 rmsk gene 117615274 117622007 . + . gene_id "HERVIP10FH_6q22.1"; transcript_id "HERVIP10FH_6q22.1"; locus "HERVIP10FH_6q22.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0070"; model_cov "5047"; model_pct "98.9"; chr6 rmsk exon 117615274 117615864 4852 + . gene_id "HERVIP10FH_6q22.1"; transcript_id "HERVIP10FH_6q22.1"; locus "HERVIP10FH_6q22.1"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0070"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 117615892 117618640 9576 + . gene_id "HERVIP10FH_6q22.1"; transcript_id "HERVIP10FH_6q22.1"; locus "HERVIP10FH_6q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0070"; repClass "LTR"; repEnd "2647"; repFamily "ERV1"; repLeft "-2455"; repStart "25"; chr6 rmsk exon 117618956 117621393 9576 + . gene_id "HERVIP10FH_6q22.1"; transcript_id "HERVIP10FH_6q22.1"; locus "HERVIP10FH_6q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0070"; repClass "LTR"; repEnd "5073"; repFamily "ERV1"; repLeft "-29"; repStart "2648"; chr6 rmsk exon 117621416 117622007 4692 + . gene_id "HERVIP10FH_6q22.1"; transcript_id "HERVIP10FH_6q22.1"; locus "HERVIP10FH_6q22.1"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0070"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_6q22.1b ### chr6 rmsk gene 117623163 117628976 . + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0341"; model_cov "6055"; model_pct "91.8"; chr6 rmsk exon 117623163 117623699 3383 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "1503"; repFamily "ERV1"; repLeft "-5095"; repStart "940"; chr6 rmsk exon 117623697 117624414 2211 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "2366"; repFamily "ERV1"; repLeft "-4232"; repStart "1955"; chr6 rmsk exon 117624411 117624466 308 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "2876"; repFamily "ERV1"; repLeft "-3722"; repStart "2819"; chr6 rmsk exon 117624458 117625653 4571 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "3538"; repFamily "ERV1"; repLeft "-3060"; repStart "1333"; chr6 rmsk exon 117625931 117626196 4571 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "3790"; repFamily "ERV1"; repLeft "-2808"; repStart "3539"; chr6 rmsk exon 117626197 117626278 301 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3593"; chr6 rmsk exon 117626278 117628292 11456 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "5896"; repFamily "ERV1"; repLeft "-702"; repStart "3837"; chr6 rmsk exon 117628576 117628976 11456 + . gene_id "MER4_6q22.1b"; transcript_id "MER4_6q22.1b"; locus "MER4_6q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0341"; repClass "LTR"; repEnd "6318"; repFamily "ERV1"; repLeft "-280"; repStart "5897"; ### HERVH_6q22.1c ### chr6 rmsk gene 117658797 117665200 . - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0580"; model_cov "5395"; model_pct "69.9"; chr6 rmsk exon 117658797 117659226 3302 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 117659227 117659797 3117 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr6 rmsk exon 117659791 117660052 1337 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr6 rmsk exon 117660050 117664247 24992 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "801"; repStart "-2798"; chr6 rmsk exon 117664308 117664772 2584 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6 rmsk exon 117664773 117665200 3201 - . gene_id "HERVH_6q22.1c"; transcript_id "HERVH_6q22.1c"; locus "HERVH_6q22.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0580"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_6q22.1c ### chr6 rmsk gene 117848985 117851684 . - . gene_id "MER4_6q22.1c"; transcript_id "MER4_6q22.1c"; locus "MER4_6q22.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0343"; model_cov "2452"; model_pct "37.2"; chr6 rmsk exon 117848985 117849441 3150 - . gene_id "MER4_6q22.1c"; transcript_id "MER4_6q22.1c"; locus "MER4_6q22.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0343"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 117849449 117851684 6805 - . gene_id "MER4_6q22.1c"; transcript_id "MER4_6q22.1c"; locus "MER4_6q22.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0343"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4144"; repStart "-2"; ### MER4_6q22.1d ### chr6 rmsk gene 117856856 117859792 . - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0344"; model_cov "1635"; model_pct "24.8"; chr6 rmsk exon 117856856 117857445 2404 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "2971"; repStart "-3268"; chr6 rmsk exon 117857761 117858017 2404 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "2970"; repFamily "ERV1"; repLeft "2737"; repStart "-3628"; chr6 rmsk exon 117858261 117858444 3735 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2309"; repStart "-4103"; chr6 rmsk exon 117858743 117859275 3735 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "2308"; repFamily "ERV1"; repLeft "1771"; repStart "-4290"; chr6 rmsk exon 117859274 117859620 1428 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "994"; repStart "-5330"; chr6 rmsk exon 117859745 117859792 292 - . gene_id "MER4_6q22.1d"; transcript_id "MER4_6q22.1d"; locus "MER4_6q22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0344"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "753"; repStart "-5799"; ### MER41_6q22.31a ### chr6 rmsk gene 118194214 118195116 . - . gene_id "MER41_6q22.31a"; transcript_id "MER41_6q22.31a"; locus "MER41_6q22.31a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0229"; model_cov "819"; model_pct "13.8"; chr6 rmsk exon 118194214 118195116 4935 - . gene_id "MER41_6q22.31a"; transcript_id "MER41_6q22.31a"; locus "MER41_6q22.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0229"; repClass "LTR"; repEnd "1451"; repFamily "ERV1"; repLeft "632"; repStart "-4495"; ### ERVLB4_6q22.31a ### chr6 rmsk gene 118305026 118306363 . - . gene_id "ERVLB4_6q22.31a"; transcript_id "ERVLB4_6q22.31a"; locus "ERVLB4_6q22.31a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0740"; model_cov "973"; model_pct "17.0"; chr6 rmsk exon 118305026 118305048 1754 - . gene_id "ERVLB4_6q22.31a"; transcript_id "ERVLB4_6q22.31a"; locus "ERVLB4_6q22.31a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0740"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "375"; repStart "-19"; chr6 rmsk exon 118305094 118305452 1754 - . gene_id "ERVLB4_6q22.31a"; transcript_id "ERVLB4_6q22.31a"; locus "ERVLB4_6q22.31a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0740"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr6 rmsk exon 118305453 118306363 3879 - . gene_id "ERVLB4_6q22.31a"; transcript_id "ERVLB4_6q22.31a"; locus "ERVLB4_6q22.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0740"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4741"; repStart "0"; ### ERVLE_6q22.31a ### chr6 rmsk gene 118402854 118406844 . - . gene_id "ERVLE_6q22.31a"; transcript_id "ERVLE_6q22.31a"; locus "ERVLE_6q22.31a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1692"; model_cov "3604"; model_pct "63.6"; chr6 rmsk exon 118402854 118403659 3071 - . gene_id "ERVLE_6q22.31a"; transcript_id "ERVLE_6q22.31a"; locus "ERVLE_6q22.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1692"; repClass "LTR"; repEnd "3908"; repFamily "ERVL"; repLeft "3072"; repStart "-1759"; chr6 rmsk exon 118403679 118406344 8990 - . gene_id "ERVLE_6q22.31a"; transcript_id "ERVLE_6q22.31a"; locus "ERVLE_6q22.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1692"; repClass "LTR"; repEnd "2773"; repFamily "ERVL"; repLeft "5"; repStart "-2894"; chr6 rmsk exon 118406350 118406844 747 - . gene_id "ERVLE_6q22.31a"; transcript_id "ERVLE_6q22.31a"; locus "ERVLE_6q22.31a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1692"; repClass "LTR"; repEnd "662"; repFamily "ERVL"; repLeft "148"; repStart "-1"; ### HUERSP3_6q22.31 ### chr6 rmsk gene 118579711 118588950 . + . gene_id "HUERSP3_6q22.31"; transcript_id "HUERSP3_6q22.31"; locus "HUERSP3_6q22.31"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0084"; model_cov "8906"; model_pct "99.9"; chr6 rmsk exon 118579711 118580329 3884 + . gene_id "HUERSP3_6q22.31"; transcript_id "HUERSP3_6q22.31"; locus "HUERSP3_6q22.31"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0084"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 118580330 118588950 38427 + . gene_id "HUERSP3_6q22.31"; transcript_id "HUERSP3_6q22.31"; locus "HUERSP3_6q22.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0084"; repClass "LTR"; repEnd "8907"; repFamily "ERV1"; repLeft "-12"; repStart "1"; ### MER41_6q22.31b ### chr6 rmsk gene 118601580 118608058 . - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0230"; model_cov "5939"; model_pct "99.9"; chr6 rmsk exon 118601580 118602046 3501 - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0230"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "1"; repStart "-87"; chr6 rmsk exon 118602047 118602824 11415 - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0230"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5148"; repStart "-2"; chr6 rmsk exon 118603120 118605731 13688 - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0230"; repClass "LTR"; repEnd "5147"; repFamily "ERV1"; repLeft "2125"; repStart "-799"; chr6 rmsk exon 118606032 118607912 13688 - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0230"; repClass "LTR"; repEnd "2124"; repFamily "ERV1"; repLeft "3"; repStart "-3822"; chr6 rmsk exon 118607915 118608058 1018 - . gene_id "MER41_6q22.31b"; transcript_id "MER41_6q22.31b"; locus "MER41_6q22.31b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0230"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "411"; repStart "0"; ### HERV30_6q22.31 ### chr6 rmsk gene 118617102 118626802 . + . gene_id "HERV30_6q22.31"; transcript_id "HERV30_6q22.31"; locus "HERV30_6q22.31"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0011"; model_cov "8247"; model_pct "99.9"; chr6 rmsk exon 118617102 118617798 3891 + . gene_id "HERV30_6q22.31"; transcript_id "HERV30_6q22.31"; locus "HERV30_6q22.31"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0011"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 118617801 118624278 44990 + . gene_id "HERV30_6q22.31"; transcript_id "HERV30_6q22.31"; locus "HERV30_6q22.31"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0011"; repClass "LTR"; repEnd "6502"; repFamily "ERV1"; repLeft "-1755"; repStart "3"; chr6 rmsk exon 118624357 118626104 7738 + . gene_id "HERV30_6q22.31"; transcript_id "HERV30_6q22.31"; locus "HERV30_6q22.31"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0011"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "6509"; chr6 rmsk exon 118626105 118626802 3819 + . gene_id "HERV30_6q22.31"; transcript_id "HERV30_6q22.31"; locus "HERV30_6q22.31"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0011"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q22.31b ### chr6 rmsk gene 118694772 118700068 . - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1694"; model_cov "2832"; model_pct "50.0"; chr6 rmsk exon 118694772 118695424 1804 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "4628"; repStart "-389"; chr6 rmsk exon 118695614 118695660 1804 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "4627"; repFamily "ERVL"; repLeft "4582"; repStart "-1040"; chr6 rmsk exon 118695711 118695799 1360 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "4471"; repFamily "ERVL"; repLeft "4379"; repStart "-1196"; chr6 rmsk exon 118695924 118695988 1360 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "4334"; repStart "-1289"; chr6 rmsk exon 118696302 118696671 1360 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "3954"; repStart "-1334"; chr6 rmsk exon 118697605 118697964 648 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "3575"; repFamily "ERVL"; repLeft "3112"; repStart "-2092"; chr6 rmsk exon 118698001 118699042 1668 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "3101"; repFamily "ERVL"; repLeft "2013"; repStart "-2566"; chr6 rmsk exon 118699999 118700068 280 - . gene_id "ERVLE_6q22.31b"; transcript_id "ERVLE_6q22.31b"; locus "ERVLE_6q22.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1694"; repClass "LTR"; repEnd "1560"; repFamily "ERVL"; repLeft "1489"; repStart "-4107"; ### ERV316A3_6q22.31a ### chr6 rmsk gene 118804589 118805872 . + . gene_id "ERV316A3_6q22.31a"; transcript_id "ERV316A3_6q22.31a"; locus "ERV316A3_6q22.31a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1288"; model_cov "566"; model_pct "10.8"; chr6 rmsk exon 118804589 118804802 795 + . gene_id "ERV316A3_6q22.31a"; transcript_id "ERV316A3_6q22.31a"; locus "ERV316A3_6q22.31a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1288"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "-215"; repStart "4"; chr6 rmsk exon 118804805 118804983 455 + . gene_id "ERV316A3_6q22.31a"; transcript_id "ERV316A3_6q22.31a"; locus "ERV316A3_6q22.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1288"; repClass "LTR"; repEnd "1806"; repFamily "ERVL"; repLeft "-3420"; repStart "1607"; chr6 rmsk exon 118805508 118805872 943 + . gene_id "ERV316A3_6q22.31a"; transcript_id "ERV316A3_6q22.31a"; locus "ERV316A3_6q22.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1288"; repClass "LTR"; repEnd "2323"; repFamily "ERVL"; repLeft "-2903"; repStart "1956"; ### HERVFRD_6q22.31 ### chr6 rmsk gene 119039642 119042597 . + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0076"; model_cov "1288"; model_pct "17.9"; chr6 rmsk exon 119039642 119040297 4189 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0076"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 119040300 119040655 1767 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0076"; repClass "LTR"; repEnd "369"; repFamily "ERV1"; repLeft "-6836"; repStart "4"; chr6 rmsk exon 119040645 119041016 1543 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0076"; repClass "LTR"; repEnd "1047"; repFamily "ERV1"; repLeft "-6158"; repStart "655"; chr6 rmsk exon 119041114 119041284 1549 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0076"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "-5759"; repStart "1260"; chr6 rmsk exon 119042043 119042424 1549 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0076"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "-5413"; repStart "1447"; chr6 rmsk exon 119042433 119042597 944 + . gene_id "HERVFRD_6q22.31"; transcript_id "HERVFRD_6q22.31"; locus "HERVFRD_6q22.31"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0076"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "0"; repStart "534"; ### ERVLE_6q22.31c ### chr6 rmsk gene 119090676 119092125 . - . gene_id "ERVLE_6q22.31c"; transcript_id "ERVLE_6q22.31c"; locus "ERVLE_6q22.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1695"; model_cov "1404"; model_pct "24.8"; chr6 rmsk exon 119090676 119092125 2557 - . gene_id "ERVLE_6q22.31c"; transcript_id "ERVLE_6q22.31c"; locus "ERVLE_6q22.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1695"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "3860"; repStart "-403"; ### ERV316A3_6q22.31b ### chr6 rmsk gene 119092566 119093946 . - . gene_id "ERV316A3_6q22.31b"; transcript_id "ERV316A3_6q22.31b"; locus "ERV316A3_6q22.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1290"; model_cov "1264"; model_pct "24.2"; chr6 rmsk exon 119092566 119093434 844 - . gene_id "ERV316A3_6q22.31b"; transcript_id "ERV316A3_6q22.31b"; locus "ERV316A3_6q22.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1290"; repClass "LTR"; repEnd "1862"; repFamily "ERVL"; repLeft "949"; repStart "-3364"; chr6 rmsk exon 119093602 119093946 594 - . gene_id "ERV316A3_6q22.31b"; transcript_id "ERV316A3_6q22.31b"; locus "ERV316A3_6q22.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1290"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "-9"; repStart "-4884"; ### ERVLB4_6q22.31b ### chr6 rmsk gene 119710088 119715861 . - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0741"; model_cov "3880"; model_pct "67.9"; chr6 rmsk exon 119710088 119710417 1848 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "1"; repStart "-59"; chr6 rmsk exon 119710833 119711470 981 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "4403"; repStart "-618"; chr6 rmsk exon 119711912 119712007 736 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "4293"; repStart "-1312"; chr6 rmsk exon 119712548 119712669 2833 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "4081"; repFamily "ERVL"; repLeft "3957"; repStart "-1633"; chr6 rmsk exon 119713038 119714885 2833 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "2006"; repStart "-1758"; chr6 rmsk exon 119714911 119715861 994 - . gene_id "ERVLB4_6q22.31b"; transcript_id "ERVLB4_6q22.31b"; locus "ERVLB4_6q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0741"; repClass "LTR"; repEnd "1957"; repFamily "ERVL"; repLeft "953"; repStart "-3757"; ### HERVI_6q22.31 ### chr6 rmsk gene 119764795 119771992 . - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0012"; model_cov "4267"; model_pct "54.8"; chr6 rmsk exon 119764795 119765291 3170 - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0012"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 119765312 119768974 21366 - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0012"; repClass "LTR"; repEnd "7769"; repFamily "ERV1"; repLeft "4099"; repStart "-16"; chr6 rmsk exon 119770847 119771118 286 - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0012"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "436"; repStart "-7088"; chr6 rmsk exon 119771133 119771478 959 - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0012"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "10"; repStart "-7439"; chr6 rmsk exon 119771487 119771992 3421 - . gene_id "HERVI_6q22.31"; transcript_id "HERVI_6q22.31"; locus "HERVI_6q22.31"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0012"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_6q22.31 ### chr6 rmsk gene 119768973 119770120 . - . gene_id "HERVIP10F_6q22.31"; transcript_id "HERVIP10F_6q22.31"; locus "HERVIP10F_6q22.31"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0047"; model_cov "1044"; model_pct "13.5"; chr6 rmsk exon 119768973 119769010 254 - . gene_id "HERVIP10F_6q22.31"; transcript_id "HERVIP10F_6q22.31"; locus "HERVIP10F_6q22.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0047"; repClass "LTR"; repEnd "6729"; repFamily "ERV1"; repLeft "6692"; repStart "-1008"; chr6 rmsk exon 119769124 119770120 5847 - . gene_id "HERVIP10F_6q22.31"; transcript_id "HERVIP10F_6q22.31"; locus "HERVIP10F_6q22.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0047"; repClass "LTR"; repEnd "3670"; repFamily "ERV1"; repLeft "2663"; repStart "-4067"; ### ERVLE_6q22.31d ### chr6 rmsk gene 120041731 120043415 . - . gene_id "ERVLE_6q22.31d"; transcript_id "ERVLE_6q22.31d"; locus "ERVLE_6q22.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1696"; model_cov "989"; model_pct "17.5"; chr6 rmsk exon 120041731 120042030 803 - . gene_id "ERVLE_6q22.31d"; transcript_id "ERVLE_6q22.31d"; locus "ERVLE_6q22.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1696"; repClass "LTR"; repEnd "5576"; repFamily "ERVL"; repLeft "5273"; repStart "-91"; chr6 rmsk exon 120042407 120042587 803 - . gene_id "ERVLE_6q22.31d"; transcript_id "ERVLE_6q22.31d"; locus "ERVLE_6q22.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1696"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "5091"; repStart "-395"; chr6 rmsk exon 120042923 120043415 1029 - . gene_id "ERVLE_6q22.31d"; transcript_id "ERVLE_6q22.31d"; locus "ERVLE_6q22.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1696"; repClass "LTR"; repEnd "734"; repFamily "ERVL"; repLeft "229"; repStart "-4933"; ### ERVLE_6q22.31e ### chr6 rmsk gene 120275002 120275855 . - . gene_id "ERVLE_6q22.31e"; transcript_id "ERVLE_6q22.31e"; locus "ERVLE_6q22.31e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1697"; model_cov "776"; model_pct "13.7"; chr6 rmsk exon 120275002 120275393 325 - . gene_id "ERVLE_6q22.31e"; transcript_id "ERVLE_6q22.31e"; locus "ERVLE_6q22.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1697"; repClass "LTR"; repEnd "4939"; repFamily "ERVL"; repLeft "4534"; repStart "-728"; chr6 rmsk exon 120275411 120275659 491 - . gene_id "ERVLE_6q22.31e"; transcript_id "ERVLE_6q22.31e"; locus "ERVLE_6q22.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1697"; repClass "LTR"; repEnd "4484"; repFamily "ERVL"; repLeft "4227"; repStart "-1183"; chr6 rmsk exon 120275740 120275855 454 - . gene_id "ERVLE_6q22.31e"; transcript_id "ERVLE_6q22.31e"; locus "ERVLE_6q22.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1697"; repClass "LTR"; repEnd "3918"; repFamily "ERVL"; repLeft "3804"; repStart "-1749"; ### ERVLE_6q22.31f ### chr6 rmsk gene 120409764 120410317 . - . gene_id "ERVLE_6q22.31f"; transcript_id "ERVLE_6q22.31f"; locus "ERVLE_6q22.31f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1698"; model_cov "564"; model_pct "10.0"; chr6 rmsk exon 120409764 120410317 256 - . gene_id "ERVLE_6q22.31f"; transcript_id "ERVLE_6q22.31f"; locus "ERVLE_6q22.31f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1698"; repClass "LTR"; repEnd "929"; repFamily "ERVL"; repLeft "365"; repStart "-4738"; ### HERVH_6q22.31a ### chr6 rmsk gene 120462634 120468133 . - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0582"; model_cov "5059"; model_pct "65.6"; chr6 rmsk exon 120462634 120462714 634 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "-21"; repStart "-391"; chr6 rmsk exon 120462715 120463093 2414 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 120463092 120463306 1348 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5602"; repStart "-1894"; chr6 rmsk exon 120463310 120463970 4365 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 120463973 120464477 3308 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 120464468 120467680 19878 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr6 rmsk exon 120467683 120468133 3392 - . gene_id "HERVH_6q22.31a"; transcript_id "HERVH_6q22.31a"; locus "HERVH_6q22.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0582"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_6q22.31a ### chr6 rmsk gene 120505957 120509018 . - . gene_id "HERVL_6q22.31a"; transcript_id "HERVL_6q22.31a"; locus "HERVL_6q22.31a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0624"; model_cov "3010"; model_pct "53.2"; chr6 rmsk exon 120505957 120506017 447 - . gene_id "HERVL_6q22.31a"; transcript_id "HERVL_6q22.31a"; locus "HERVL_6q22.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0624"; repClass "LTR"; repEnd "61"; repFamily "ERVL"; repLeft "1"; repStart "-392"; chr6 rmsk exon 120506018 120509018 23346 - . gene_id "HERVL_6q22.31a"; transcript_id "HERVL_6q22.31a"; locus "HERVL_6q22.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0624"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2644"; repStart "0"; ### HERVH_6q22.31b ### chr6 rmsk gene 120924825 120930857 . + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0583"; model_cov "5266"; model_pct "68.3"; chr6 rmsk exon 120924825 120925234 2568 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 120925237 120929209 9610 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr6 rmsk exon 120929212 120929873 4419 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 120929871 120930091 1354 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr6 rmsk exon 120930090 120930467 2370 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 120930468 120930857 2427 + . gene_id "HERVH_6q22.31b"; transcript_id "HERVH_6q22.31b"; locus "HERVH_6q22.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0583"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVK11D_6q22.31 ### chr6 rmsk gene 121042085 121049347 . + . gene_id "HERVK11D_6q22.31"; transcript_id "HERVK11D_6q22.31"; locus "HERVK11D_6q22.31"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0014"; model_cov "5540"; model_pct "71.5"; chr6 rmsk exon 121042085 121042949 6632 + . gene_id "HERVK11D_6q22.31"; transcript_id "HERVK11D_6q22.31"; locus "HERVK11D_6q22.31"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0014"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 121042950 121043810 6918 + . gene_id "HERVK11D_6q22.31"; transcript_id "HERVK11D_6q22.31"; locus "HERVK11D_6q22.31"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0014"; repClass "LTR"; repEnd "862"; repFamily "ERVK"; repLeft "-6890"; repStart "1"; chr6 rmsk exon 121043811 121048473 38999 + . gene_id "HERVK11D_6q22.31"; transcript_id "HERVK11D_6q22.31"; locus "HERVK11D_6q22.31"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0014"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "3073"; chr6 rmsk exon 121048474 121049347 7243 + . gene_id "HERVK11D_6q22.31"; transcript_id "HERVK11D_6q22.31"; locus "HERVK11D_6q22.31"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0014"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_6q22.31b ### chr6 rmsk gene 121172279 121173445 . + . gene_id "HERVL_6q22.31b"; transcript_id "HERVL_6q22.31b"; locus "HERVL_6q22.31b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0625"; model_cov "712"; model_pct "12.6"; chr6 rmsk exon 121172279 121172981 5368 + . gene_id "HERVL_6q22.31b"; transcript_id "HERVL_6q22.31b"; locus "HERVL_6q22.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0625"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4942"; chr6 rmsk exon 121172982 121173445 3210 + . gene_id "HERVL_6q22.31b"; transcript_id "HERVL_6q22.31b"; locus "HERVL_6q22.31b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0625"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### ERVLE_6q22.31g ### chr6 rmsk gene 121184165 121186687 . + . gene_id "ERVLE_6q22.31g"; transcript_id "ERVLE_6q22.31g"; locus "ERVLE_6q22.31g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1699"; model_cov "1758"; model_pct "31.0"; chr6 rmsk exon 121184165 121184794 1369 + . gene_id "ERVLE_6q22.31g"; transcript_id "ERVLE_6q22.31g"; locus "ERVLE_6q22.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1699"; repClass "LTR"; repEnd "3231"; repFamily "ERVL"; repLeft "-2436"; repStart "2580"; chr6 rmsk exon 121185497 121185674 550 + . gene_id "ERVLE_6q22.31g"; transcript_id "ERVLE_6q22.31g"; locus "ERVLE_6q22.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1699"; repClass "LTR"; repEnd "4342"; repFamily "ERVL"; repLeft "-1325"; repStart "4102"; chr6 rmsk exon 121185748 121186040 846 + . gene_id "ERVLE_6q22.31g"; transcript_id "ERVLE_6q22.31g"; locus "ERVLE_6q22.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1699"; repClass "LTR"; repEnd "4703"; repFamily "ERVL"; repLeft "-964"; repStart "4390"; chr6 rmsk exon 121186127 121186687 606 + . gene_id "ERVLE_6q22.31g"; transcript_id "ERVLE_6q22.31g"; locus "ERVLE_6q22.31g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1699"; repClass "LTR"; repEnd "5389"; repFamily "ERVL"; repLeft "-278"; repStart "4835"; ### HERVL_6q22.31c ### chr6 rmsk gene 121191685 121198343 . + . gene_id "HERVL_6q22.31c"; transcript_id "HERVL_6q22.31c"; locus "HERVL_6q22.31c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0626"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 121191685 121192123 3126 + . gene_id "HERVL_6q22.31c"; transcript_id "HERVL_6q22.31c"; locus "HERVL_6q22.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0626"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 121192125 121197766 43162 + . gene_id "HERVL_6q22.31c"; transcript_id "HERVL_6q22.31c"; locus "HERVL_6q22.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0626"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr6 rmsk exon 121197767 121198187 2851 + . gene_id "HERVL_6q22.31c"; transcript_id "HERVL_6q22.31c"; locus "HERVL_6q22.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0626"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "-110"; chr6 rmsk exon 121198279 121198343 369 + . gene_id "HERVL_6q22.31c"; transcript_id "HERVL_6q22.31c"; locus "HERVL_6q22.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0626"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "399"; ### HERVL_6q22.31d ### chr6 rmsk gene 121216004 121217376 . + . gene_id "HERVL_6q22.31d"; transcript_id "HERVL_6q22.31d"; locus "HERVL_6q22.31d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0627"; model_cov "997"; model_pct "17.6"; chr6 rmsk exon 121216004 121216443 2787 + . gene_id "HERVL_6q22.31d"; transcript_id "HERVL_6q22.31d"; locus "HERVL_6q22.31d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0627"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 121216444 121216883 2827 + . gene_id "HERVL_6q22.31d"; transcript_id "HERVL_6q22.31d"; locus "HERVL_6q22.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0627"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-5179"; repStart "1"; chr6 rmsk exon 121216860 121217376 3921 + . gene_id "HERVL_6q22.31d"; transcript_id "HERVL_6q22.31d"; locus "HERVL_6q22.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0627"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "-2974"; repStart "2157"; ### ERVLE_6q22.31h ### chr6 rmsk gene 121534278 121536098 . - . gene_id "ERVLE_6q22.31h"; transcript_id "ERVLE_6q22.31h"; locus "ERVLE_6q22.31h"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1701"; model_cov "1478"; model_pct "26.1"; chr6 rmsk exon 121534278 121534616 1662 - . gene_id "ERVLE_6q22.31h"; transcript_id "ERVLE_6q22.31h"; locus "ERVLE_6q22.31h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1701"; repClass "LTR"; repEnd "4382"; repFamily "ERVL"; repLeft "4029"; repStart "-1285"; chr6 rmsk exon 121534666 121535737 4387 - . gene_id "ERVLE_6q22.31h"; transcript_id "ERVLE_6q22.31h"; locus "ERVLE_6q22.31h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1701"; repClass "LTR"; repEnd "3654"; repFamily "ERVL"; repLeft "2529"; repStart "-2013"; chr6 rmsk exon 121535755 121536098 933 - . gene_id "ERVLE_6q22.31h"; transcript_id "ERVLE_6q22.31h"; locus "ERVLE_6q22.31h"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1701"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "1"; repStart "-280"; ### HERVH_6q22.31c ### chr6 rmsk gene 121620422 121626300 . - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0584"; model_cov "4920"; model_pct "63.8"; chr6 rmsk exon 121620422 121620869 3329 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 121620870 121621249 2511 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 121621248 121621462 1403 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5602"; repStart "-1894"; chr6 rmsk exon 121621466 121622126 4364 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr6 rmsk exon 121622122 121622634 3264 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr6 rmsk exon 121622625 121622773 926 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 121622753 121625850 20140 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr6 rmsk exon 121625853 121626300 3274 - . gene_id "HERVH_6q22.31c"; transcript_id "HERVH_6q22.31c"; locus "HERVH_6q22.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0584"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_6q22.31 ### chr6 rmsk gene 121631522 121634431 . - . gene_id "MER4_6q22.31"; transcript_id "MER4_6q22.31"; locus "MER4_6q22.31"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0345"; model_cov "2215"; model_pct "33.6"; chr6 rmsk exon 121631522 121631880 2321 - . gene_id "MER4_6q22.31"; transcript_id "MER4_6q22.31"; locus "MER4_6q22.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0345"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "88"; repStart "-2"; chr6 rmsk exon 121632158 121632249 592 - . gene_id "MER4_6q22.31"; transcript_id "MER4_6q22.31"; locus "MER4_6q22.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0345"; repClass "LTR"; repEnd "-106"; repFamily "ERV1"; repLeft "-191"; repStart "-578"; chr6 rmsk exon 121632252 121634431 14329 - . gene_id "MER4_6q22.31"; transcript_id "MER4_6q22.31"; locus "MER4_6q22.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0345"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4383"; repStart "0"; ### HERVL_6q22.31e ### chr6 rmsk gene 121634444 121636191 . + . gene_id "HERVL_6q22.31e"; transcript_id "HERVL_6q22.31e"; locus "HERVL_6q22.31e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0628"; model_cov "1441"; model_pct "25.5"; chr6 rmsk exon 121634444 121635881 11041 + . gene_id "HERVL_6q22.31e"; transcript_id "HERVL_6q22.31e"; locus "HERVL_6q22.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0628"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4213"; chr6 rmsk exon 121635882 121636191 2145 + . gene_id "HERVL_6q22.31e"; transcript_id "HERVL_6q22.31e"; locus "HERVL_6q22.31e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0628"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "-125"; repStart "1"; ### HERVL_6q22.31f ### chr6 rmsk gene 121636307 121638441 . - . gene_id "HERVL_6q22.31f"; transcript_id "HERVL_6q22.31f"; locus "HERVL_6q22.31f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0629"; model_cov "1513"; model_pct "26.8"; chr6 rmsk exon 121636307 121637022 11693 - . gene_id "HERVL_6q22.31f"; transcript_id "HERVL_6q22.31f"; locus "HERVL_6q22.31f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0629"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "853"; repStart "-4101"; chr6 rmsk exon 121637053 121637868 11693 - . gene_id "HERVL_6q22.31f"; transcript_id "HERVL_6q22.31f"; locus "HERVL_6q22.31f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0629"; repClass "LTR"; repEnd "852"; repFamily "ERVL"; repLeft "39"; repStart "-4802"; chr6 rmsk exon 121638085 121638441 2259 - . gene_id "HERVL_6q22.31f"; transcript_id "HERVL_6q22.31f"; locus "HERVL_6q22.31f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0629"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "1"; repStart "-73"; ### ERVLE_6q22.31i ### chr6 rmsk gene 121920375 121922037 . - . gene_id "ERVLE_6q22.31i"; transcript_id "ERVLE_6q22.31i"; locus "ERVLE_6q22.31i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1704"; model_cov "1692"; model_pct "29.9"; chr6 rmsk exon 121920375 121920544 379 - . gene_id "ERVLE_6q22.31i"; transcript_id "ERVLE_6q22.31i"; locus "ERVLE_6q22.31i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1704"; repClass "LTR"; repEnd "2499"; repFamily "ERVL"; repLeft "2320"; repStart "-3168"; chr6 rmsk exon 121920580 121921044 966 - . gene_id "ERVLE_6q22.31i"; transcript_id "ERVLE_6q22.31i"; locus "ERVLE_6q22.31i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1704"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "1166"; repStart "-3959"; chr6 rmsk exon 121921049 121922037 1148 - . gene_id "ERVLE_6q22.31i"; transcript_id "ERVLE_6q22.31i"; locus "ERVLE_6q22.31i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1704"; repClass "LTR"; repEnd "1282"; repFamily "ERVL"; repLeft "311"; repStart "-4385"; ### ERV316A3_6q22.31c ### chr6 rmsk gene 122156366 122158710 . - . gene_id "ERV316A3_6q22.31c"; transcript_id "ERV316A3_6q22.31c"; locus "ERV316A3_6q22.31c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1293"; model_cov "2215"; model_pct "42.4"; chr6 rmsk exon 122156366 122157777 2758 - . gene_id "ERV316A3_6q22.31c"; transcript_id "ERV316A3_6q22.31c"; locus "ERV316A3_6q22.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1293"; repClass "LTR"; repEnd "2126"; repFamily "ERVL"; repLeft "581"; repStart "-3100"; chr6 rmsk exon 122158001 122158042 257 - . gene_id "ERV316A3_6q22.31c"; transcript_id "ERV316A3_6q22.31c"; locus "ERV316A3_6q22.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1293"; repClass "LTR"; repEnd "1318"; repFamily "ERVL"; repLeft "1277"; repStart "-3908"; chr6 rmsk exon 122158111 122158710 1442 - . gene_id "ERV316A3_6q22.31c"; transcript_id "ERV316A3_6q22.31c"; locus "ERV316A3_6q22.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1293"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "303"; repStart "-4294"; ### HERVL18_6q22.31a ### chr6 rmsk gene 122360886 122366684 . + . gene_id "HERVL18_6q22.31a"; transcript_id "HERVL18_6q22.31a"; locus "HERVL18_6q22.31a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0076"; model_cov "5555"; model_pct "91.9"; chr6 rmsk exon 122360886 122366368 35500 + . gene_id "HERVL18_6q22.31a"; transcript_id "HERVL18_6q22.31a"; locus "HERVL18_6q22.31a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0076"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "492"; chr6 rmsk exon 122366370 122366684 1186 + . gene_id "HERVL18_6q22.31a"; transcript_id "HERVL18_6q22.31a"; locus "HERVL18_6q22.31a"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0076"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-13"; repStart "1"; ### HERVL_6q22.31g ### chr6 rmsk gene 122454582 122455654 . + . gene_id "HERVL_6q22.31g"; transcript_id "HERVL_6q22.31g"; locus "HERVL_6q22.31g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0630"; model_cov "620"; model_pct "11.0"; chr6 rmsk exon 122454582 122454724 969 + . gene_id "HERVL_6q22.31g"; transcript_id "HERVL_6q22.31g"; locus "HERVL_6q22.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0630"; repClass "LTR"; repEnd "1971"; repFamily "ERVL"; repLeft "-3683"; repStart "1812"; chr6 rmsk exon 122454715 122455155 3135 + . gene_id "HERVL_6q22.31g"; transcript_id "HERVL_6q22.31g"; locus "HERVL_6q22.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0630"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5193"; chr6 rmsk exon 122455158 122455204 267 + . gene_id "HERVL_6q22.31g"; transcript_id "HERVL_6q22.31g"; locus "HERVL_6q22.31g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0630"; repClass "LTR"; repEnd "55"; repFamily "ERVL"; repLeft "-398"; repStart "3"; chr6 rmsk exon 122455208 122455654 3383 + . gene_id "HERVL_6q22.31g"; transcript_id "HERVL_6q22.31g"; locus "HERVL_6q22.31g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0630"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVKC4_6q22.31 ### chr6 rmsk gene 122504845 122512093 . - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0009"; model_cov "5250"; model_pct "99.8"; chr6 rmsk exon 122504845 122505395 3743 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 122505399 122506694 21007 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "5255"; repFamily "ERVK"; repLeft "3955"; repStart "-7"; chr6 rmsk exon 122507001 122508755 21007 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "3954"; repFamily "ERVK"; repLeft "2172"; repStart "-1308"; chr6 rmsk exon 122509049 122509435 21007 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "2171"; repFamily "ERVK"; repLeft "1781"; repStart "-3091"; chr6 rmsk exon 122509730 122511546 21007 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "1780"; repFamily "ERVK"; repLeft "2"; repStart "-3482"; chr6 rmsk exon 122511547 122512093 3534 - . gene_id "HERVKC4_6q22.31"; transcript_id "HERVKC4_6q22.31"; locus "HERVKC4_6q22.31"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0009"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6q22.31j ### chr6 rmsk gene 122555891 122557953 . + . gene_id "ERVLE_6q22.31j"; transcript_id "ERVLE_6q22.31j"; locus "ERVLE_6q22.31j"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1705"; model_cov "831"; model_pct "14.7"; chr6 rmsk exon 122555891 122555989 3290 + . gene_id "ERVLE_6q22.31j"; transcript_id "ERVLE_6q22.31j"; locus "ERVLE_6q22.31j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1705"; repClass "LTR"; repEnd "2851"; repFamily "ERVL"; repLeft "-2816"; repStart "2751"; chr6 rmsk exon 122556365 122556932 3575 + . gene_id "ERVLE_6q22.31j"; transcript_id "ERVLE_6q22.31j"; locus "ERVLE_6q22.31j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1705"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "-2249"; repStart "2852"; chr6 rmsk exon 122557226 122557397 3575 + . gene_id "ERVLE_6q22.31j"; transcript_id "ERVLE_6q22.31j"; locus "ERVLE_6q22.31j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1705"; repClass "LTR"; repEnd "3584"; repFamily "ERVL"; repLeft "-2083"; repStart "3419"; chr6 rmsk exon 122557602 122557953 1125 + . gene_id "ERVLE_6q22.31j"; transcript_id "ERVLE_6q22.31j"; locus "ERVLE_6q22.31j"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1705"; repClass "LTR"; repEnd "616"; repFamily "ERVL"; repLeft "-12"; repStart "241"; ### HERVL_6q22.31h ### chr6 rmsk gene 122593819 122600432 . - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0631"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 122593819 122593970 1131 - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0631"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "1"; repStart "-291"; chr6 rmsk exon 122593971 122594211 44962 - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0631"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5419"; repStart "0"; chr6 rmsk exon 122594505 122599931 44962 - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0631"; repClass "LTR"; repEnd "5418"; repFamily "ERVL"; repLeft "1"; repStart "-236"; chr6 rmsk exon 122599932 122599973 3119 - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0631"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "404"; repStart "0"; chr6 rmsk exon 122600043 122600432 3119 - . gene_id "HERVL_6q22.31h"; transcript_id "HERVL_6q22.31h"; locus "HERVL_6q22.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0631"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; ### ERVLB4_6q22.31c ### chr6 rmsk gene 122647057 122652643 . - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0742"; model_cov "4669"; model_pct "81.7"; chr6 rmsk exon 122647057 122647416 1314 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "1"; repStart "-19"; chr6 rmsk exon 122647422 122647590 619 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5553"; repStart "0"; chr6 rmsk exon 122647619 122650234 13351 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "5483"; repFamily "ERVL"; repLeft "2835"; repStart "-231"; chr6 rmsk exon 122650234 122650415 997 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "2196"; repStart "-3333"; chr6 rmsk exon 122650441 122651049 2981 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1031"; repStart "-4052"; chr6 rmsk exon 122651205 122652160 4163 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "1045"; repFamily "ERVL"; repLeft "1"; repStart "-4669"; chr6 rmsk exon 122652338 122652643 1130 - . gene_id "ERVLB4_6q22.31c"; transcript_id "ERVLB4_6q22.31c"; locus "ERVLB4_6q22.31c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0742"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "27"; repStart "-48"; ### HERVEA_6q22.31 ### chr6 rmsk gene 122741515 122749262 . - . gene_id "HERVEA_6q22.31"; transcript_id "HERVEA_6q22.31"; locus "HERVEA_6q22.31"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0043"; model_cov "6673"; model_pct "85.0"; chr6 rmsk exon 122741515 122741971 3285 - . gene_id "HERVEA_6q22.31"; transcript_id "HERVEA_6q22.31"; locus "HERVEA_6q22.31"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0043"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 122741973 122745339 28904 - . gene_id "HERVEA_6q22.31"; transcript_id "HERVEA_6q22.31"; locus "HERVEA_6q22.31"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0043"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "4472"; repStart "0"; chr6 rmsk exon 122745509 122748804 27823 - . gene_id "HERVEA_6q22.31"; transcript_id "HERVEA_6q22.31"; locus "HERVEA_6q22.31"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0043"; repClass "LTR"; repEnd "3299"; repFamily "ERV1"; repLeft "1"; repStart "-4548"; chr6 rmsk exon 122748805 122749262 3679 - . gene_id "HERVEA_6q22.31"; transcript_id "HERVEA_6q22.31"; locus "HERVEA_6q22.31"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0043"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6q22.31d ### chr6 rmsk gene 122840217 122845567 . + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0585"; model_cov "4911"; model_pct "63.7"; chr6 rmsk exon 122840217 122843243 19852 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "6"; chr6 rmsk exon 122843223 122843372 988 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 122843363 122843862 3465 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 122843865 122844521 4385 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 122844523 122844740 1420 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 122844739 122845117 2554 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 122845118 122845567 3763 + . gene_id "HERVH_6q22.31d"; transcript_id "HERVH_6q22.31d"; locus "HERVH_6q22.31d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0585"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER101_6q22.31 ### chr6 rmsk gene 123304696 123305846 . + . gene_id "MER101_6q22.31"; transcript_id "MER101_6q22.31"; locus "MER101_6q22.31"; category "internal"; intModel "MER101-int"; locid "MER101-int_0191"; model_cov "1636"; model_pct "24.6"; chr6 rmsk exon 123304696 123305721 2512 + . gene_id "MER101_6q22.31"; transcript_id "MER101_6q22.31"; locus "MER101_6q22.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0191"; repClass "LTR"; repEnd "5417"; repFamily "ERV1"; repLeft "-1222"; repStart "3927"; chr6 rmsk exon 123305702 123305846 567 + . gene_id "MER101_6q22.31"; transcript_id "MER101_6q22.31"; locus "MER101_6q22.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0191"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "-698"; repStart "5795"; ### HERVH_6q22.31e ### chr6 rmsk gene 123556844 123562344 . + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0586"; model_cov "4841"; model_pct "62.8"; chr6 rmsk exon 123556844 123557255 2633 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 123557265 123560024 14571 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "1"; chr6 rmsk exon 123560019 123560254 1576 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "-3978"; repStart "3500"; chr6 rmsk exon 123560249 123561502 6369 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3962"; chr6 rmsk exon 123561520 123561937 2718 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7277"; chr6 rmsk exon 123561938 123562344 2659 + . gene_id "HERVH_6q22.31e"; transcript_id "HERVH_6q22.31e"; locus "HERVH_6q22.31e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0586"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### HERVH_6q22.31f ### chr6 rmsk gene 123582336 123588007 . - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0587"; model_cov "4917"; model_pct "63.7"; chr6 rmsk exon 123582336 123582734 2484 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 123582735 123583112 2106 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 123583111 123583343 1302 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr6 rmsk exon 123583327 123583986 4231 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr6 rmsk exon 123583989 123584491 3467 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 123584482 123584628 872 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 123584623 123587604 20520 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 123587607 123588007 2575 - . gene_id "HERVH_6q22.31f"; transcript_id "HERVH_6q22.31f"; locus "HERVH_6q22.31f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0587"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_6q22.31d ### chr6 rmsk gene 123710909 123713878 . + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1295"; model_cov "1693"; model_pct "32.4"; chr6 rmsk exon 123710909 123711278 1113 + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1295"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "66"; chr6 rmsk exon 123711504 123711666 405 + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1295"; repClass "LTR"; repEnd "678"; repFamily "ERVL"; repLeft "-4548"; repStart "500"; chr6 rmsk exon 123711826 123712371 1418 + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1295"; repClass "LTR"; repEnd "1378"; repFamily "ERVL"; repLeft "-3848"; repStart "835"; chr6 rmsk exon 123712462 123712741 1418 + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1295"; repClass "LTR"; repEnd "1690"; repFamily "ERVL"; repLeft "-3536"; repStart "1379"; chr6 rmsk exon 123713218 123713878 1771 + . gene_id "ERV316A3_6q22.31d"; transcript_id "ERV316A3_6q22.31d"; locus "ERV316A3_6q22.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1295"; repClass "LTR"; repEnd "2827"; repFamily "ERVL"; repLeft "-2399"; repStart "2166"; ### ERV316A3_6q22.31e ### chr6 rmsk gene 123720896 123722803 . + . gene_id "ERV316A3_6q22.31e"; transcript_id "ERV316A3_6q22.31e"; locus "ERV316A3_6q22.31e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1297"; model_cov "1507"; model_pct "28.8"; chr6 rmsk exon 123720896 123722399 3011 + . gene_id "ERV316A3_6q22.31e"; transcript_id "ERV316A3_6q22.31e"; locus "ERV316A3_6q22.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1297"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "3718"; chr6 rmsk exon 123722401 123722803 598 + . gene_id "ERV316A3_6q22.31e"; transcript_id "ERV316A3_6q22.31e"; locus "ERV316A3_6q22.31e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1297"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### ERVLE_6q22.31k ### chr6 rmsk gene 123772014 123774441 . - . gene_id "ERVLE_6q22.31k"; transcript_id "ERVLE_6q22.31k"; locus "ERVLE_6q22.31k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1706"; model_cov "2050"; model_pct "36.2"; chr6 rmsk exon 123772014 123772669 1832 - . gene_id "ERVLE_6q22.31k"; transcript_id "ERVLE_6q22.31k"; locus "ERVLE_6q22.31k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1706"; repClass "LTR"; repEnd "5407"; repFamily "ERVL"; repLeft "4776"; repStart "-260"; chr6 rmsk exon 123772951 123773384 1314 - . gene_id "ERVLE_6q22.31k"; transcript_id "ERVLE_6q22.31k"; locus "ERVLE_6q22.31k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1706"; repClass "LTR"; repEnd "4562"; repFamily "ERVL"; repLeft "4117"; repStart "-1105"; chr6 rmsk exon 123773458 123774441 2141 - . gene_id "ERVLE_6q22.31k"; transcript_id "ERVLE_6q22.31k"; locus "ERVLE_6q22.31k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1706"; repClass "LTR"; repEnd "3733"; repFamily "ERVL"; repLeft "2759"; repStart "-1934"; ### HERVL_6q22.31i ### chr6 rmsk gene 123793483 123799685 . + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0632"; model_cov "5128"; model_pct "90.7"; chr6 rmsk exon 123793483 123793800 1936 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "-8"; chr6 rmsk exon 123794052 123794680 4966 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "631"; repFamily "ERVL"; repLeft "-5023"; repStart "1"; chr6 rmsk exon 123794687 123798699 34471 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "-424"; repStart "1154"; chr6 rmsk exon 123798738 123799160 34471 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5231"; chr6 rmsk exon 123799161 123799546 3132 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr6 rmsk exon 123799650 123799685 3132 + . gene_id "HERVL_6q22.31i"; transcript_id "HERVL_6q22.31i"; locus "HERVL_6q22.31i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0632"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "404"; ### ERV316A3_6q22.31f ### chr6 rmsk gene 124328507 124330699 . - . gene_id "ERV316A3_6q22.31f"; transcript_id "ERV316A3_6q22.31f"; locus "ERV316A3_6q22.31f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1298"; model_cov "771"; model_pct "14.8"; chr6 rmsk exon 124328507 124328898 693 - . gene_id "ERV316A3_6q22.31f"; transcript_id "ERV316A3_6q22.31f"; locus "ERV316A3_6q22.31f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1298"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "4"; repStart "-6"; chr6 rmsk exon 124329324 124330105 1357 - . gene_id "ERV316A3_6q22.31f"; transcript_id "ERV316A3_6q22.31f"; locus "ERV316A3_6q22.31f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1298"; repClass "LTR"; repEnd "4778"; repFamily "ERVL"; repLeft "4007"; repStart "-448"; chr6 rmsk exon 124330288 124330699 1482 - . gene_id "ERV316A3_6q22.31f"; transcript_id "ERV316A3_6q22.31f"; locus "ERV316A3_6q22.31f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1298"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "20"; repStart "-7"; ### ERV316A3_6q22.31g ### chr6 rmsk gene 124439889 124443608 . - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1299"; model_cov "2701"; model_pct "51.7"; chr6 rmsk exon 124439889 124440243 726 - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1299"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr6 rmsk exon 124440274 124441299 2057 - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1299"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "4155"; repStart "-49"; chr6 rmsk exon 124441794 124441965 521 - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1299"; repClass "LTR"; repEnd "4143"; repFamily "ERVL"; repLeft "3967"; repStart "-1083"; chr6 rmsk exon 124442023 124443378 2660 - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1299"; repClass "LTR"; repEnd "3813"; repFamily "ERVL"; repLeft "2478"; repStart "-1413"; chr6 rmsk exon 124443437 124443608 466 - . gene_id "ERV316A3_6q22.31g"; transcript_id "ERV316A3_6q22.31g"; locus "ERV316A3_6q22.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1299"; repClass "LTR"; repEnd "2354"; repFamily "ERVL"; repLeft "2186"; repStart "-2872"; ### HERVH_6q22.31g ### chr6 rmsk gene 124890407 124897763 . + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0588"; model_cov "4915"; model_pct "63.7"; chr6 rmsk exon 124890407 124890840 2646 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 124890841 124891791 20904 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "-6783"; repStart "1"; chr6 rmsk exon 124893382 124895455 20904 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "931"; chr6 rmsk exon 124895435 124895584 965 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 124895575 124896074 3329 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 124896077 124896736 4251 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 124896738 124896953 1401 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 124896952 124897329 2499 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 124897330 124897763 2702 + . gene_id "HERVH_6q22.31g"; transcript_id "HERVH_6q22.31g"; locus "HERVH_6q22.31g"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0588"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_6q22.31c ### chr6 rmsk gene 125120074 125122084 . + . gene_id "MER41_6q22.31c"; transcript_id "MER41_6q22.31c"; locus "MER41_6q22.31c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0232"; model_cov "2009"; model_pct "33.8"; chr6 rmsk exon 125120074 125121095 6166 + . gene_id "MER41_6q22.31c"; transcript_id "MER41_6q22.31c"; locus "MER41_6q22.31c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0232"; repClass "LTR"; repEnd "502"; repFamily "ERV1"; repLeft "-5444"; repStart "-1230"; chr6 rmsk exon 125121804 125122084 2450 + . gene_id "MER41_6q22.31c"; transcript_id "MER41_6q22.31c"; locus "MER41_6q22.31c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0232"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-5166"; repStart "503"; ### HERVL18_6q22.31b ### chr6 rmsk gene 125267901 125274451 . + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0078"; model_cov "5822"; model_pct "96.3"; chr6 rmsk exon 125267901 125268239 2098 + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0078"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 125268253 125268474 1101 + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0078"; repClass "LTR"; repEnd "227"; repFamily "ERVL"; repLeft "-5820"; repStart "8"; chr6 rmsk exon 125268464 125272207 30848 + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0078"; repClass "LTR"; repEnd "4229"; repFamily "ERVL"; repLeft "-1818"; repStart "443"; chr6 rmsk exon 125272317 125274111 30848 + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0078"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4230"; chr6 rmsk exon 125274113 125274451 2292 + . gene_id "HERVL18_6q22.31b"; transcript_id "HERVL18_6q22.31b"; locus "HERVL18_6q22.31b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0078"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_6q22.31h ### chr6 rmsk gene 125510375 125511281 . + . gene_id "ERV316A3_6q22.31h"; transcript_id "ERV316A3_6q22.31h"; locus "ERV316A3_6q22.31h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1300"; model_cov "795"; model_pct "15.2"; chr6 rmsk exon 125510375 125510442 364 + . gene_id "ERV316A3_6q22.31h"; transcript_id "ERV316A3_6q22.31h"; locus "ERV316A3_6q22.31h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1300"; repClass "LTR"; repEnd "129"; repFamily "ERVL"; repLeft "-327"; repStart "62"; chr6 rmsk exon 125510462 125511281 1374 + . gene_id "ERV316A3_6q22.31h"; transcript_id "ERV316A3_6q22.31h"; locus "ERV316A3_6q22.31h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1300"; repClass "LTR"; repEnd "2046"; repFamily "ERVL"; repLeft "-3180"; repStart "1251"; ### HERVH_6q22.31h ### chr6 rmsk gene 125701848 125707763 . - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0589"; model_cov "5059"; model_pct "65.6"; chr6 rmsk exon 125701848 125702298 3596 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 125702299 125702676 2420 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 125702677 125702894 1313 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 125702896 125703557 4226 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 125703560 125704059 3237 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 125704050 125707311 19301 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr6 rmsk exon 125707314 125707763 3527 - . gene_id "HERVH_6q22.31h"; transcript_id "HERVH_6q22.31h"; locus "HERVH_6q22.31h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0589"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML1_6q22.32 ### chr6 rmsk gene 125910949 125912799 . - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0040"; model_cov "876"; model_pct "14.4"; chr6 rmsk exon 125910949 125911347 1974 - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0040"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "7"; repStart "0"; chr6 rmsk exon 125911356 125911474 723 - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0040"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr6 rmsk exon 125911545 125911731 1498 - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0040"; repClass "LTR"; repEnd "5902"; repFamily "ERVK"; repLeft "5715"; repStart "-194"; chr6 rmsk exon 125911732 125912265 2746 - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0040"; repClass "LTR"; repEnd "5602"; repFamily "ERVK"; repLeft "5036"; repStart "-494"; chr6 rmsk exon 125912445 125912799 1539 - . gene_id "HML1_6q22.32"; transcript_id "HML1_6q22.32"; locus "HML1_6q22.32"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0040"; repClass "LTR"; repEnd "557"; repFamily "ERVK"; repLeft "1"; repStart "-51"; ### HERVL40_6q22.32 ### chr6 rmsk gene 126044515 126049104 . + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0188"; model_cov "3042"; model_pct "55.0"; chr6 rmsk exon 126044515 126044903 1591 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "-150"; repStart "3"; chr6 rmsk exon 126045203 126045345 1591 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-2"; repStart "370"; chr6 rmsk exon 126045350 126046927 4825 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "-3918"; repStart "1"; chr6 rmsk exon 126046929 126047124 1856 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "-2818"; repStart "2525"; chr6 rmsk exon 126047834 126048121 1856 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "-2517"; repStart "2713"; chr6 rmsk exon 126048162 126049104 3910 + . gene_id "HERVL40_6q22.32"; transcript_id "HERVL40_6q22.32"; locus "HERVL40_6q22.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0188"; repClass "LTR"; repEnd "3952"; repFamily "ERVL"; repLeft "-1578"; repStart "3008"; ### ERVLE_6q22.32 ### chr6 rmsk gene 126079362 126082227 . + . gene_id "ERVLE_6q22.32"; transcript_id "ERVLE_6q22.32"; locus "ERVLE_6q22.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1707"; model_cov "2419"; model_pct "42.7"; chr6 rmsk exon 126079362 126079525 327 + . gene_id "ERVLE_6q22.32"; transcript_id "ERVLE_6q22.32"; locus "ERVLE_6q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1707"; repClass "LTR"; repEnd "1277"; repFamily "ERVL"; repLeft "-4390"; repStart "1109"; chr6 rmsk exon 126079744 126080111 6349 + . gene_id "ERVLE_6q22.32"; transcript_id "ERVLE_6q22.32"; locus "ERVLE_6q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1707"; repClass "LTR"; repEnd "1630"; repFamily "ERVL"; repLeft "-4037"; repStart "1268"; chr6 rmsk exon 126080389 126082123 6349 + . gene_id "ERVLE_6q22.32"; transcript_id "ERVLE_6q22.32"; locus "ERVLE_6q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1707"; repClass "LTR"; repEnd "3392"; repFamily "ERVL"; repLeft "-2275"; repStart "1631"; chr6 rmsk exon 126082108 126082227 370 + . gene_id "ERVLE_6q22.32"; transcript_id "ERVLE_6q22.32"; locus "ERVLE_6q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1707"; repClass "LTR"; repEnd "3656"; repFamily "ERVL"; repLeft "-2011"; repStart "3528"; ### MER101_6q22.32a ### chr6 rmsk gene 126325258 126326598 . + . gene_id "MER101_6q22.32a"; transcript_id "MER101_6q22.32a"; locus "MER101_6q22.32a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0192"; model_cov "1981"; model_pct "29.8"; chr6 rmsk exon 126325258 126325308 254 + . gene_id "MER101_6q22.32a"; transcript_id "MER101_6q22.32a"; locus "MER101_6q22.32a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0192"; repClass "LTR"; repEnd "2360"; repFamily "ERV1"; repLeft "-4279"; repStart "2310"; chr6 rmsk exon 126325352 126326598 4861 + . gene_id "MER101_6q22.32a"; transcript_id "MER101_6q22.32a"; locus "MER101_6q22.32a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0192"; repClass "LTR"; repEnd "5000"; repFamily "ERV1"; repLeft "-1639"; repStart "3069"; ### MER101_6q22.32b ### chr6 rmsk gene 126332790 126334850 . + . gene_id "MER101_6q22.32b"; transcript_id "MER101_6q22.32b"; locus "MER101_6q22.32b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0193"; model_cov "1472"; model_pct "22.2"; chr6 rmsk exon 126332790 126333743 3134 + . gene_id "MER101_6q22.32b"; transcript_id "MER101_6q22.32b"; locus "MER101_6q22.32b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0193"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3604"; chr6 rmsk exon 126333739 126334216 1846 + . gene_id "MER101_6q22.32b"; transcript_id "MER101_6q22.32b"; locus "MER101_6q22.32b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0193"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6165"; chr6 rmsk exon 126334217 126334275 1780 + . gene_id "MER101_6q22.32b"; transcript_id "MER101_6q22.32b"; locus "MER101_6q22.32b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0193"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "-400"; repStart "1"; chr6 rmsk exon 126334589 126334850 1780 + . gene_id "MER101_6q22.32b"; transcript_id "MER101_6q22.32b"; locus "MER101_6q22.32b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0193"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-135"; repStart "46"; ### HERVH_6q22.33 ### chr6 rmsk gene 126848846 126854454 . + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0590"; model_cov "4688"; model_pct "60.8"; chr6 rmsk exon 126848846 126849274 3359 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 126849277 126852147 16501 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 126852142 126852289 921 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 126852280 126852777 3356 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr6 rmsk exon 126852781 126853429 4208 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 126853427 126854025 2401 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 126854026 126854454 3322 + . gene_id "HERVH_6q22.33"; transcript_id "HERVH_6q22.33"; locus "HERVH_6q22.33"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0590"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_6q22.33 ### chr6 rmsk gene 126894522 126899750 . + . gene_id "ERVL_6q22.33"; transcript_id "ERVL_6q22.33"; locus "ERVL_6q22.33"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0187"; model_cov "4391"; model_pct "76.3"; chr6 rmsk exon 126894522 126898375 25407 + . gene_id "ERVL_6q22.33"; transcript_id "ERVL_6q22.33"; locus "ERVL_6q22.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0187"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "-622"; repStart "1264"; chr6 rmsk exon 126898715 126899162 25407 + . gene_id "ERVL_6q22.33"; transcript_id "ERVL_6q22.33"; locus "ERVL_6q22.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0187"; repClass "LTR"; repEnd "5580"; repFamily "ERVL"; repLeft "-177"; repStart "5136"; chr6 rmsk exon 126899255 126899321 357 + . gene_id "ERVL_6q22.33"; transcript_id "ERVL_6q22.33"; locus "ERVL_6q22.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0187"; repClass "LTR"; repEnd "5749"; repFamily "ERVL"; repLeft "-8"; repStart "5673"; chr6 rmsk exon 126899330 126899750 1715 + . gene_id "ERVL_6q22.33"; transcript_id "ERVL_6q22.33"; locus "ERVL_6q22.33"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0187"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "-41"; ### MER61_6q22.33 ### chr6 rmsk gene 127599328 127602176 . - . gene_id "MER61_6q22.33"; transcript_id "MER61_6q22.33"; locus "MER61_6q22.33"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0191"; model_cov "3896"; model_pct "74.7"; chr6 rmsk exon 127599328 127602075 12918 - . gene_id "MER61_6q22.33"; transcript_id "MER61_6q22.33"; locus "MER61_6q22.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0191"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "1032"; repStart "-289"; chr6 rmsk exon 127602082 127602176 626 - . gene_id "MER61_6q22.33"; transcript_id "MER61_6q22.33"; locus "MER61_6q22.33"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0191"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "1"; repStart "-335"; ### ERV316A3_6q22.33 ### chr6 rmsk gene 127704172 127706078 . + . gene_id "ERV316A3_6q22.33"; transcript_id "ERV316A3_6q22.33"; locus "ERV316A3_6q22.33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1302"; model_cov "1656"; model_pct "31.7"; chr6 rmsk exon 127704172 127705855 2955 + . gene_id "ERV316A3_6q22.33"; transcript_id "ERV316A3_6q22.33"; locus "ERV316A3_6q22.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1302"; repClass "LTR"; repEnd "4415"; repFamily "ERVL"; repLeft "-811"; repStart "2759"; chr6 rmsk exon 127705856 127706078 730 + . gene_id "ERV316A3_6q22.33"; transcript_id "ERV316A3_6q22.33"; locus "ERV316A3_6q22.33"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1302"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "234"; ### HERVL_6q22.33a ### chr6 rmsk gene 127800528 127802861 . + . gene_id "HERVL_6q22.33a"; transcript_id "HERVL_6q22.33a"; locus "HERVL_6q22.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0633"; model_cov "1928"; model_pct "34.1"; chr6 rmsk exon 127800528 127800921 2737 + . gene_id "HERVL_6q22.33a"; transcript_id "HERVL_6q22.33a"; locus "HERVL_6q22.33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0633"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 127800922 127802861 14929 + . gene_id "HERVL_6q22.33a"; transcript_id "HERVL_6q22.33a"; locus "HERVL_6q22.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0633"; repClass "LTR"; repEnd "1929"; repFamily "ERVL"; repLeft "-3725"; repStart "1"; ### ERVLE_6q22.33a ### chr6 rmsk gene 127953862 127955197 . - . gene_id "ERVLE_6q22.33a"; transcript_id "ERVLE_6q22.33a"; locus "ERVLE_6q22.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1710"; model_cov "1125"; model_pct "19.9"; chr6 rmsk exon 127953862 127954769 1821 - . gene_id "ERVLE_6q22.33a"; transcript_id "ERVLE_6q22.33a"; locus "ERVLE_6q22.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1710"; repClass "LTR"; repEnd "3533"; repFamily "ERVL"; repLeft "2605"; repStart "-2134"; chr6 rmsk exon 127955002 127955197 1821 - . gene_id "ERVLE_6q22.33a"; transcript_id "ERVLE_6q22.33a"; locus "ERVLE_6q22.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1710"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "2407"; repStart "-3063"; ### ERVLE_6q22.33b ### chr6 rmsk gene 128650836 128653147 . - . gene_id "ERVLE_6q22.33b"; transcript_id "ERVLE_6q22.33b"; locus "ERVLE_6q22.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1711"; model_cov "1883"; model_pct "33.2"; chr6 rmsk exon 128650836 128651379 3518 - . gene_id "ERVLE_6q22.33b"; transcript_id "ERVLE_6q22.33b"; locus "ERVLE_6q22.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1711"; repClass "LTR"; repEnd "5341"; repFamily "ERVL"; repLeft "4665"; repStart "-326"; chr6 rmsk exon 128651747 128652810 3518 - . gene_id "ERVLE_6q22.33b"; transcript_id "ERVLE_6q22.33b"; locus "ERVLE_6q22.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1711"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "3629"; repStart "-913"; chr6 rmsk exon 128653066 128653147 392 - . gene_id "ERVLE_6q22.33b"; transcript_id "ERVLE_6q22.33b"; locus "ERVLE_6q22.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1711"; repClass "LTR"; repEnd "3446"; repFamily "ERVL"; repLeft "3364"; repStart "-2221"; ### HERVL_6q22.33b ### chr6 rmsk gene 129406726 129409946 . - . gene_id "HERVL_6q22.33b"; transcript_id "HERVL_6q22.33b"; locus "HERVL_6q22.33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0635"; model_cov "2628"; model_pct "46.5"; chr6 rmsk exon 129406726 129407271 2083 - . gene_id "HERVL_6q22.33b"; transcript_id "HERVL_6q22.33b"; locus "HERVL_6q22.33b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0635"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr6 rmsk exon 129407272 129409870 19241 - . gene_id "HERVL_6q22.33b"; transcript_id "HERVL_6q22.33b"; locus "HERVL_6q22.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0635"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3026"; repStart "0"; chr6 rmsk exon 129409879 129409946 529 - . gene_id "HERVL_6q22.33b"; transcript_id "HERVL_6q22.33b"; locus "HERVL_6q22.33b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0635"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "1"; repStart "-385"; ### ERVLE_6q22.33c ### chr6 rmsk gene 129907164 129908733 . - . gene_id "ERVLE_6q22.33c"; transcript_id "ERVLE_6q22.33c"; locus "ERVLE_6q22.33c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1713"; model_cov "688"; model_pct "12.1"; chr6 rmsk exon 129907164 129907763 1386 - . gene_id "ERVLE_6q22.33c"; transcript_id "ERVLE_6q22.33c"; locus "ERVLE_6q22.33c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1713"; repClass "LTR"; repEnd "652"; repFamily "ERVL"; repLeft "1"; repStart "-11"; chr6 rmsk exon 129907764 129907894 533 - . gene_id "ERVLE_6q22.33c"; transcript_id "ERVLE_6q22.33c"; locus "ERVLE_6q22.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1713"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5538"; repStart "0"; chr6 rmsk exon 129908240 129908733 1665 - . gene_id "ERVLE_6q22.33c"; transcript_id "ERVLE_6q22.33c"; locus "ERVLE_6q22.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1713"; repClass "LTR"; repEnd "5532"; repFamily "ERVL"; repLeft "4973"; repStart "-135"; ### HERVH_6q23.1 ### chr6 rmsk gene 130192311 130198222 . + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0591"; model_cov "5115"; model_pct "66.3"; chr6 rmsk exon 130192311 130192710 2653 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 130192713 130195748 22256 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr6 rmsk exon 130195735 130196565 5940 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr6 rmsk exon 130196568 130197229 4566 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 130197231 130197442 1378 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 130197441 130197819 2453 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 130197820 130198222 2662 + . gene_id "HERVH_6q23.1"; transcript_id "HERVH_6q23.1"; locus "HERVH_6q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0591"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_6q23.1 ### chr6 rmsk gene 130261359 130267970 . + . gene_id "HARLEQUIN_6q23.1"; transcript_id "HARLEQUIN_6q23.1"; locus "HARLEQUIN_6q23.1"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0091"; model_cov "6254"; model_pct "90.7"; chr6 rmsk exon 130261359 130262596 4849 + . gene_id "HARLEQUIN_6q23.1"; transcript_id "HARLEQUIN_6q23.1"; locus "HARLEQUIN_6q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0091"; repClass "LTR"; repEnd "1585"; repFamily "ERV1"; repLeft "-5311"; repStart "263"; chr6 rmsk exon 130262583 130267503 38241 + . gene_id "HARLEQUIN_6q23.1"; transcript_id "HARLEQUIN_6q23.1"; locus "HARLEQUIN_6q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0091"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1964"; chr6 rmsk exon 130267504 130267970 2187 + . gene_id "HARLEQUIN_6q23.1"; transcript_id "HARLEQUIN_6q23.1"; locus "HARLEQUIN_6q23.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0091"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q23.1 ### chr6 rmsk gene 130473894 130475512 . - . gene_id "ERVLE_6q23.1"; transcript_id "ERVLE_6q23.1"; locus "ERVLE_6q23.1"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1714"; model_cov "1184"; model_pct "20.9"; chr6 rmsk exon 130473894 130474461 1839 - . gene_id "ERVLE_6q23.1"; transcript_id "ERVLE_6q23.1"; locus "ERVLE_6q23.1"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1714"; repClass "LTR"; repEnd "591"; repFamily "ERVL"; repLeft "10"; repStart "-72"; chr6 rmsk exon 130474472 130475512 3228 - . gene_id "ERVLE_6q23.1"; transcript_id "ERVLE_6q23.1"; locus "ERVLE_6q23.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1714"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "4482"; repStart "-1"; ### HERVH_6q23.2a ### chr6 rmsk gene 131295357 131301196 . + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0592"; model_cov "4905"; model_pct "63.6"; chr6 rmsk exon 131295357 131295806 3543 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 131295809 131298866 19704 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 131298846 131298995 958 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 131298998 131299487 3302 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3503"; chr6 rmsk exon 131299490 131300150 4466 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 131300152 131300368 1367 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 131300367 131300746 2523 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 131300747 131301196 3594 + . gene_id "HERVH_6q23.2a"; transcript_id "HERVH_6q23.2a"; locus "HERVH_6q23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0592"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_6q23.2b ### chr6 rmsk gene 131323296 131329137 . + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0593"; model_cov "4899"; model_pct "63.5"; chr6 rmsk exon 131323296 131323746 3716 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 131323749 131326796 20302 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 131326791 131326938 862 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 131326938 131327431 3347 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr6 rmsk exon 131327435 131328095 4329 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr6 rmsk exon 131328097 131328313 1409 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 131328312 131328687 2550 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 131328688 131329137 3673 + . gene_id "HERVH_6q23.2b"; transcript_id "HERVH_6q23.2b"; locus "HERVH_6q23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0593"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_6q23.2 ### chr6 rmsk gene 131331293 131332824 . + . gene_id "MER41_6q23.2"; transcript_id "MER41_6q23.2"; locus "MER41_6q23.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0233"; model_cov "990"; model_pct "16.6"; chr6 rmsk exon 131331293 131332279 7032 + . gene_id "MER41_6q23.2"; transcript_id "MER41_6q23.2"; locus "MER41_6q23.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0233"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4956"; chr6 rmsk exon 131332281 131332824 3946 + . gene_id "MER41_6q23.2"; transcript_id "MER41_6q23.2"; locus "MER41_6q23.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0233"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "2"; ### HERVH_6q23.2c ### chr6 rmsk gene 131338800 131344564 . + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0594"; model_cov "4682"; model_pct "60.7"; chr6 rmsk exon 131338800 131339250 3501 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 131339253 131342270 20236 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 131342265 131342414 873 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 131342405 131342907 3397 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 131342910 131343513 3041 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "5142"; repFamily "ERV1"; repLeft "-2571"; repStart "4488"; chr6 rmsk exon 131343522 131344113 2629 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 131344114 131344564 3420 + . gene_id "HERVH_6q23.2c"; transcript_id "HERVH_6q23.2c"; locus "HERVH_6q23.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0594"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_6q23.2d ### chr6 rmsk gene 131402925 131408542 . + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0595"; model_cov "4897"; model_pct "63.5"; chr6 rmsk exon 131402925 131403357 3233 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 131403360 131406216 14875 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 131406211 131406358 795 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 131406358 131406851 3091 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr6 rmsk exon 131406855 131407516 4041 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr6 rmsk exon 131407518 131407734 1306 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 131407735 131408113 2251 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 131408114 131408542 3334 + . gene_id "HERVH_6q23.2d"; transcript_id "HERVH_6q23.2d"; locus "HERVH_6q23.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0595"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL74_6q23.2 ### chr6 rmsk gene 131440431 131442963 . + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0037"; model_cov "2356"; model_pct "41.4"; chr6 rmsk exon 131440431 131440888 2596 + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0037"; repClass "LTR"; repEnd "2093"; repFamily "ERVL"; repLeft "-3592"; repStart "1637"; chr6 rmsk exon 131441203 131442377 5215 + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0037"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "-2344"; repStart "2094"; chr6 rmsk exon 131442377 131442528 694 + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0037"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "-2034"; repStart "3496"; chr6 rmsk exon 131442524 131442612 315 + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0037"; repClass "LTR"; repEnd "4017"; repFamily "ERVL"; repLeft "-1668"; repStart "3919"; chr6 rmsk exon 131442607 131442963 1686 + . gene_id "HERVL74_6q23.2"; transcript_id "HERVL74_6q23.2"; locus "HERVL74_6q23.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0037"; repClass "LTR"; repEnd "4989"; repFamily "ERVL"; repLeft "-696"; repStart "4589"; ### HERVH_6q23.2e ### chr6 rmsk gene 131504327 131509186 . - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0596"; model_cov "4388"; model_pct "56.9"; chr6 rmsk exon 131504327 131504777 3362 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 131504778 131505155 2335 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 131505156 131505368 1240 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 131505370 131506032 4083 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 131506035 131506539 3254 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 131506530 131506679 897 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 131506674 131509018 14666 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "609"; repStart "-4726"; chr6 rmsk exon 131509021 131509111 589 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "732"; repFamily "ERV1"; repLeft "642"; repStart "-6981"; chr6 rmsk exon 131509117 131509186 485 - . gene_id "HERVH_6q23.2e"; transcript_id "HERVH_6q23.2e"; locus "HERVH_6q23.2e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0596"; repClass "LTR"; repEnd "70"; repFamily "ERV1"; repLeft "1"; repStart "-402"; ### ERV316A3_6q23.2a ### chr6 rmsk gene 131782176 131783854 . + . gene_id "ERV316A3_6q23.2a"; transcript_id "ERV316A3_6q23.2a"; locus "ERV316A3_6q23.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1305"; model_cov "1651"; model_pct "31.6"; chr6 rmsk exon 131782176 131783854 2896 + . gene_id "ERV316A3_6q23.2a"; transcript_id "ERV316A3_6q23.2a"; locus "ERV316A3_6q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1305"; repClass "LTR"; repEnd "2250"; repFamily "ERVL"; repLeft "-2976"; repStart "599"; ### HERVH_6q23.2f ### chr6 rmsk gene 131901550 131907417 . + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0597"; model_cov "4914"; model_pct "63.7"; chr6 rmsk exon 131901550 131902003 3466 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 131902006 131905101 16250 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr6 rmsk exon 131905081 131905230 919 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 131905221 131905720 3221 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 131905723 131906385 4143 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 131906387 131906590 1147 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 131906591 131906968 2414 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 131906969 131907417 3723 + . gene_id "HERVH_6q23.2f"; transcript_id "HERVH_6q23.2f"; locus "HERVH_6q23.2f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0597"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6q23.2b ### chr6 rmsk gene 132160779 132164412 . + . gene_id "ERV316A3_6q23.2b"; transcript_id "ERV316A3_6q23.2b"; locus "ERV316A3_6q23.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1306"; model_cov "1114"; model_pct "21.3"; chr6 rmsk exon 132160779 132161366 1610 + . gene_id "ERV316A3_6q23.2b"; transcript_id "ERV316A3_6q23.2b"; locus "ERV316A3_6q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1306"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-953"; repStart "3695"; chr6 rmsk exon 132163483 132163992 1371 + . gene_id "ERV316A3_6q23.2b"; transcript_id "ERV316A3_6q23.2b"; locus "ERV316A3_6q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1306"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4690"; chr6 rmsk exon 132163999 132164412 1086 + . gene_id "ERV316A3_6q23.2b"; transcript_id "ERV316A3_6q23.2b"; locus "ERV316A3_6q23.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1306"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### HERVL40_6q23.2a ### chr6 rmsk gene 132170479 132172306 . - . gene_id "HERVL40_6q23.2a"; transcript_id "HERVL40_6q23.2a"; locus "HERVL40_6q23.2a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0190"; model_cov "946"; model_pct "17.1"; chr6 rmsk exon 132170479 132170922 1530 - . gene_id "HERVL40_6q23.2a"; transcript_id "HERVL40_6q23.2a"; locus "HERVL40_6q23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0190"; repClass "LTR"; repEnd "3002"; repFamily "ERVL"; repLeft "2536"; repStart "-2528"; chr6 rmsk exon 132170991 132171173 662 - . gene_id "HERVL40_6q23.2a"; transcript_id "HERVL40_6q23.2a"; locus "HERVL40_6q23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0190"; repClass "LTR"; repEnd "1513"; repFamily "ERVL"; repLeft "1328"; repStart "-4017"; chr6 rmsk exon 132171232 132171529 1210 - . gene_id "HERVL40_6q23.2a"; transcript_id "HERVL40_6q23.2a"; locus "HERVL40_6q23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0190"; repClass "LTR"; repEnd "1213"; repFamily "ERVL"; repLeft "918"; repStart "-4317"; chr6 rmsk exon 132171818 132172306 1951 - . gene_id "HERVL40_6q23.2a"; transcript_id "HERVL40_6q23.2a"; locus "HERVL40_6q23.2a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0190"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "25"; repStart "0"; ### ERVLB4_6q23.2a ### chr6 rmsk gene 132478457 132480921 . + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0747"; model_cov "1701"; model_pct "29.8"; chr6 rmsk exon 132478457 132479099 1231 + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0747"; repClass "LTR"; repEnd "2855"; repFamily "ERVL"; repLeft "-2859"; repStart "2185"; chr6 rmsk exon 132479191 132479536 631 + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0747"; repClass "LTR"; repEnd "3383"; repFamily "ERVL"; repLeft "-2331"; repStart "2996"; chr6 rmsk exon 132479559 132479738 373 + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0747"; repClass "LTR"; repEnd "4295"; repFamily "ERVL"; repLeft "-1419"; repStart "4114"; chr6 rmsk exon 132480335 132480513 318 + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0747"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "-855"; repStart "4664"; chr6 rmsk exon 132480707 132480921 440 + . gene_id "ERVLB4_6q23.2a"; transcript_id "ERVLB4_6q23.2a"; locus "ERVLB4_6q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0747"; repClass "LTR"; repEnd "5388"; repFamily "ERVL"; repLeft "-326"; repStart "5120"; ### ERV316A3_6q23.2c ### chr6 rmsk gene 132544147 132545101 . - . gene_id "ERV316A3_6q23.2c"; transcript_id "ERV316A3_6q23.2c"; locus "ERV316A3_6q23.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1307"; model_cov "865"; model_pct "16.6"; chr6 rmsk exon 132544147 132544298 514 - . gene_id "ERV316A3_6q23.2c"; transcript_id "ERV316A3_6q23.2c"; locus "ERV316A3_6q23.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1307"; repClass "LTR"; repEnd "3568"; repFamily "ERVL"; repLeft "3408"; repStart "-1658"; chr6 rmsk exon 132544421 132545101 1953 - . gene_id "ERV316A3_6q23.2c"; transcript_id "ERV316A3_6q23.2c"; locus "ERV316A3_6q23.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1307"; repClass "LTR"; repEnd "3210"; repFamily "ERVL"; repLeft "2505"; repStart "-2016"; ### ERVLE_6q23.2a ### chr6 rmsk gene 132563277 132564500 . - . gene_id "ERVLE_6q23.2a"; transcript_id "ERVLE_6q23.2a"; locus "ERVLE_6q23.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1718"; model_cov "1276"; model_pct "22.5"; chr6 rmsk exon 132563277 132564500 4635 - . gene_id "ERVLE_6q23.2a"; transcript_id "ERVLE_6q23.2a"; locus "ERVLE_6q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1718"; repClass "LTR"; repEnd "1328"; repFamily "ERVL"; repLeft "52"; repStart "-4339"; ### HERVL_6q23.2a ### chr6 rmsk gene 133269757 133273501 . - . gene_id "HERVL_6q23.2a"; transcript_id "HERVL_6q23.2a"; locus "HERVL_6q23.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0636"; model_cov "2585"; model_pct "45.7"; chr6 rmsk exon 133269757 133270213 2993 - . gene_id "HERVL_6q23.2a"; transcript_id "HERVL_6q23.2a"; locus "HERVL_6q23.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0636"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 133270214 133272806 20523 - . gene_id "HERVL_6q23.2a"; transcript_id "HERVL_6q23.2a"; locus "HERVL_6q23.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0636"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3069"; repStart "0"; chr6 rmsk exon 133273049 133273086 2946 - . gene_id "HERVL_6q23.2a"; transcript_id "HERVL_6q23.2a"; locus "HERVL_6q23.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0636"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr6 rmsk exon 133273118 133273501 2946 - . gene_id "HERVL_6q23.2a"; transcript_id "HERVL_6q23.2a"; locus "HERVL_6q23.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0636"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### HERVL40_6q23.2b ### chr6 rmsk gene 133360991 133365319 . + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0192"; model_cov "3395"; model_pct "61.4"; chr6 rmsk exon 133360991 133361045 308 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "-465"; repStart "3"; chr6 rmsk exon 133361155 133361604 1466 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "64"; chr6 rmsk exon 133361606 133363264 4911 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-3922"; repStart "1"; chr6 rmsk exon 133363265 133363478 1222 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "-2766"; repStart "2520"; chr6 rmsk exon 133363774 133363945 1222 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "2929"; repFamily "ERVL"; repLeft "-2601"; repStart "2765"; chr6 rmsk exon 133363968 133365211 2439 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "4380"; repFamily "ERVL"; repLeft "-1150"; repStart "3000"; chr6 rmsk exon 133365226 133365319 523 + . gene_id "HERVL40_6q23.2b"; transcript_id "HERVL40_6q23.2b"; locus "HERVL40_6q23.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0192"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "426"; ### HERVL_6q23.2b ### chr6 rmsk gene 133556992 133562147 . - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0637"; model_cov "3800"; model_pct "67.2"; chr6 rmsk exon 133556992 133557222 1549 - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0637"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "203"; repStart "0"; chr6 rmsk exon 133557223 133558413 29689 - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0637"; repClass "LTR"; repEnd "3803"; repFamily "ERVL"; repLeft "2615"; repStart "-1851"; chr6 rmsk exon 133558921 133561510 29689 - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0637"; repClass "LTR"; repEnd "2614"; repFamily "ERVL"; repLeft "2"; repStart "-3040"; chr6 rmsk exon 133561527 133561574 247 - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0637"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "390"; repStart "-7"; chr6 rmsk exon 133561715 133562147 2943 - . gene_id "HERVL_6q23.2b"; transcript_id "HERVL_6q23.2b"; locus "HERVL_6q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0637"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-110"; repStart "-35"; ### ERVLB4_6q23.2b ### chr6 rmsk gene 133627971 133630255 . + . gene_id "ERVLB4_6q23.2b"; transcript_id "ERVLB4_6q23.2b"; locus "ERVLB4_6q23.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0748"; model_cov "2048"; model_pct "35.8"; chr6 rmsk exon 133627971 133629845 8572 + . gene_id "ERVLB4_6q23.2b"; transcript_id "ERVLB4_6q23.2b"; locus "ERVLB4_6q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0748"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "3665"; chr6 rmsk exon 133629846 133630255 1268 + . gene_id "ERVLB4_6q23.2b"; transcript_id "ERVLB4_6q23.2b"; locus "ERVLB4_6q23.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0748"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_6q23.2c ### chr6 rmsk gene 133654072 133659489 . + . gene_id "HERVL_6q23.2c"; transcript_id "HERVL_6q23.2c"; locus "HERVL_6q23.2c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0639"; model_cov "5423"; model_pct "95.9"; chr6 rmsk exon 133654072 133655802 12720 + . gene_id "HERVL_6q23.2c"; transcript_id "HERVL_6q23.2c"; locus "HERVL_6q23.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0639"; repClass "LTR"; repEnd "1762"; repFamily "ERVL"; repLeft "-3892"; repStart "25"; chr6 rmsk exon 133655800 133655969 1289 + . gene_id "HERVL_6q23.2c"; transcript_id "HERVL_6q23.2c"; locus "HERVL_6q23.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0639"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "-1940"; repStart "3544"; chr6 rmsk exon 133655961 133659489 26170 + . gene_id "HERVL_6q23.2c"; transcript_id "HERVL_6q23.2c"; locus "HERVL_6q23.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0639"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "-380"; repStart "1758"; ### ERVLE_6q23.2b ### chr6 rmsk gene 133689205 133691594 . - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1719"; model_cov "1680"; model_pct "29.6"; chr6 rmsk exon 133689205 133689484 498 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "5340"; repFamily "ERVL"; repLeft "4981"; repStart "-327"; chr6 rmsk exon 133689524 133689708 427 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "4929"; repFamily "ERVL"; repLeft "4666"; repStart "-738"; chr6 rmsk exon 133690194 133690298 373 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "4712"; repFamily "ERVL"; repLeft "4603"; repStart "-955"; chr6 rmsk exon 133690378 133690557 503 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "4440"; repFamily "ERVL"; repLeft "4122"; repStart "-1227"; chr6 rmsk exon 133690650 133691142 1212 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "2794"; repStart "-2389"; chr6 rmsk exon 133691447 133691594 1212 - . gene_id "ERVLE_6q23.2b"; transcript_id "ERVLE_6q23.2b"; locus "ERVLE_6q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1719"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "2646"; repStart "-2874"; ### ERVLE_6q23.2c ### chr6 rmsk gene 133946581 133948031 . - . gene_id "ERVLE_6q23.2c"; transcript_id "ERVLE_6q23.2c"; locus "ERVLE_6q23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1721"; model_cov "1509"; model_pct "26.6"; chr6 rmsk exon 133946581 133948031 5327 - . gene_id "ERVLE_6q23.2c"; transcript_id "ERVLE_6q23.2c"; locus "ERVLE_6q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1721"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "3776"; repStart "-382"; ### ERVLB4_6q23.2c ### chr6 rmsk gene 134186061 134188500 . - . gene_id "ERVLB4_6q23.2c"; transcript_id "ERVLB4_6q23.2c"; locus "ERVLB4_6q23.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0749"; model_cov "2034"; model_pct "35.6"; chr6 rmsk exon 134186061 134186131 490 - . gene_id "ERVLB4_6q23.2c"; transcript_id "ERVLB4_6q23.2c"; locus "ERVLB4_6q23.2c"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0749"; repClass "LTR"; repEnd "71"; repFamily "ERVL"; repLeft "1"; repStart "-646"; chr6 rmsk exon 134186133 134186812 13149 - . gene_id "ERVLB4_6q23.2c"; transcript_id "ERVLB4_6q23.2c"; locus "ERVLB4_6q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0749"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5059"; repStart "-1"; chr6 rmsk exon 134187115 134188500 13149 - . gene_id "ERVLB4_6q23.2c"; transcript_id "ERVLB4_6q23.2c"; locus "ERVLB4_6q23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0749"; repClass "LTR"; repEnd "5058"; repFamily "ERVL"; repLeft "3678"; repStart "-656"; ### ERVLE_6q23.2d ### chr6 rmsk gene 134532708 134536159 . + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_1722"; model_cov "2683"; model_pct "47.3"; chr6 rmsk exon 134532708 134532848 577 + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1722"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-519"; repStart "1"; chr6 rmsk exon 134532864 134532966 536 + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1722"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-359"; repStart "201"; chr6 rmsk exon 134532970 134533050 343 + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1722"; repClass "LTR"; repEnd "2767"; repFamily "ERVL"; repLeft "-2900"; repStart "2686"; chr6 rmsk exon 134533084 134535527 4070 + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1722"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "-7"; repStart "3058"; chr6 rmsk exon 134535529 134536159 2134 + . gene_id "ERVLE_6q23.2d"; transcript_id "ERVLE_6q23.2d"; locus "ERVLE_6q23.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1722"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HML1_6q23.2 ### chr6 rmsk gene 134600811 134605423 . - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0042"; model_cov "2327"; model_pct "38.2"; chr6 rmsk exon 134600811 134601136 2591 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 134601140 134601256 709 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr6 rmsk exon 134601332 134601403 571 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5825"; repStart "-199"; chr6 rmsk exon 134601464 134601550 561 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "5764"; repFamily "ERVK"; repLeft "5656"; repStart "-332"; chr6 rmsk exon 134601550 134602138 4319 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4928"; repStart "-544"; chr6 rmsk exon 134602123 134603153 7984 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "2867"; repFamily "ERVK"; repLeft "1827"; repStart "-3229"; chr6 rmsk exon 134604735 134605080 1969 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "1"; repStart "-5735"; chr6 rmsk exon 134605081 134605423 2753 - . gene_id "HML1_6q23.2"; transcript_id "HML1_6q23.2"; locus "HML1_6q23.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0042"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_6q23.3a ### chr6 rmsk gene 134769530 134770270 . - . gene_id "ERVLE_6q23.3a"; transcript_id "ERVLE_6q23.3a"; locus "ERVLE_6q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1723"; model_cov "616"; model_pct "10.9"; chr6 rmsk exon 134769530 134769910 676 - . gene_id "ERVLE_6q23.3a"; transcript_id "ERVLE_6q23.3a"; locus "ERVLE_6q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1723"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "4758"; repStart "-527"; chr6 rmsk exon 134770048 134770270 513 - . gene_id "ERVLE_6q23.3a"; transcript_id "ERVLE_6q23.3a"; locus "ERVLE_6q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1723"; repClass "LTR"; repEnd "4605"; repFamily "ERVL"; repLeft "4371"; repStart "-1062"; ### ERVL_6q23.3a ### chr6 rmsk gene 134771009 134771659 . - . gene_id "ERVL_6q23.3a"; transcript_id "ERVL_6q23.3a"; locus "ERVL_6q23.3a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0189"; model_cov "689"; model_pct "12.0"; chr6 rmsk exon 134771009 134771659 1056 - . gene_id "ERVL_6q23.3a"; transcript_id "ERVL_6q23.3a"; locus "ERVL_6q23.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0189"; repClass "LTR"; repEnd "2863"; repFamily "ERVL"; repLeft "2174"; repStart "-2894"; ### HERVL18_6q23.3 ### chr6 rmsk gene 134871407 134875649 . - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0079"; model_cov "2198"; model_pct "36.3"; chr6 rmsk exon 134871407 134871728 2512 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "41"; repStart "0"; chr6 rmsk exon 134872043 134872083 2512 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "2"; repStart "-317"; chr6 rmsk exon 134872307 134872400 664 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr6 rmsk exon 134872409 134872740 4969 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "3573"; repFamily "ERVL"; repLeft "3195"; repStart "-2474"; chr6 rmsk exon 134873343 134873819 4969 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "3194"; repFamily "ERVL"; repLeft "2718"; repStart "-2853"; chr6 rmsk exon 134873817 134874090 1628 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr6 rmsk exon 134874090 134874581 1832 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1255"; repStart "-4237"; chr6 rmsk exon 134874582 134874708 1867 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "358"; repStart "-5589"; chr6 rmsk exon 134875026 134875290 1867 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "95"; repStart "-5690"; chr6 rmsk exon 134875316 134875649 2473 - . gene_id "HERVL18_6q23.3"; transcript_id "HERVL18_6q23.3"; locus "HERVL18_6q23.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0079"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "1"; repStart "-1"; ### ERV316A3_6q23.3a ### chr6 rmsk gene 135569650 135574376 . + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1309"; model_cov "2256"; model_pct "43.2"; chr6 rmsk exon 135569650 135570057 1383 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-20"; repStart "1"; chr6 rmsk exon 135570247 135570473 1159 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-4745"; repStart "250"; chr6 rmsk exon 135570498 135570527 1384 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "-4657"; repStart "540"; chr6 rmsk exon 135570821 135571122 1384 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "907"; repFamily "ERVL"; repLeft "-4319"; repStart "570"; chr6 rmsk exon 135571488 135571703 1384 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4076"; repStart "908"; chr6 rmsk exon 135571702 135572583 3158 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "4617"; repFamily "ERVL"; repLeft "-609"; repStart "3759"; chr6 rmsk exon 135573838 135574376 1776 + . gene_id "ERV316A3_6q23.3a"; transcript_id "ERV316A3_6q23.3a"; locus "ERV316A3_6q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1309"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "4621"; ### ERVLE_6q23.3b ### chr6 rmsk gene 135579885 135582302 . + . gene_id "ERVLE_6q23.3b"; transcript_id "ERVLE_6q23.3b"; locus "ERVLE_6q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1724"; model_cov "744"; model_pct "13.1"; chr6 rmsk exon 135579885 135580016 273 + . gene_id "ERVLE_6q23.3b"; transcript_id "ERVLE_6q23.3b"; locus "ERVLE_6q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1724"; repClass "LTR"; repEnd "2481"; repFamily "ERVL"; repLeft "-3186"; repStart "2270"; chr6 rmsk exon 135580124 135580194 284 + . gene_id "ERVLE_6q23.3b"; transcript_id "ERVLE_6q23.3b"; locus "ERVLE_6q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1724"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "-2986"; repStart "2611"; chr6 rmsk exon 135580716 135580872 416 + . gene_id "ERVLE_6q23.3b"; transcript_id "ERVLE_6q23.3b"; locus "ERVLE_6q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1724"; repClass "LTR"; repEnd "3069"; repFamily "ERVL"; repLeft "-2598"; repStart "2908"; chr6 rmsk exon 135582020 135582302 678 + . gene_id "ERVLE_6q23.3b"; transcript_id "ERVLE_6q23.3b"; locus "ERVLE_6q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1724"; repClass "LTR"; repEnd "3614"; repFamily "ERVL"; repLeft "-2053"; repStart "3312"; ### ERVLE_6q23.3c ### chr6 rmsk gene 135800510 135803032 . - . gene_id "ERVLE_6q23.3c"; transcript_id "ERVLE_6q23.3c"; locus "ERVLE_6q23.3c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1725"; model_cov "1939"; model_pct "34.2"; chr6 rmsk exon 135800510 135801136 1645 - . gene_id "ERVLE_6q23.3c"; transcript_id "ERVLE_6q23.3c"; locus "ERVLE_6q23.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1725"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "27"; repStart "-2"; chr6 rmsk exon 135801155 135803032 7753 - . gene_id "ERVLE_6q23.3c"; transcript_id "ERVLE_6q23.3c"; locus "ERVLE_6q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1725"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "3728"; repStart "0"; ### HERVH_6q23.3 ### chr6 rmsk gene 137060300 137067121 . - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0598"; model_cov "5755"; model_pct "74.6"; chr6 rmsk exon 137060300 137060696 2642 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "1"; repStart "-15"; chr6 rmsk exon 137060697 137061069 2121 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 137061070 137061107 1359 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5784"; repStart "-1894"; chr6 rmsk exon 137061423 137061609 1359 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "5783"; repFamily "ERV1"; repLeft "5600"; repStart "-1930"; chr6 rmsk exon 137061611 137066707 29837 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr6 rmsk exon 137066716 137067121 2682 - . gene_id "HERVH_6q23.3"; transcript_id "HERVH_6q23.3"; locus "HERVH_6q23.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0598"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; ### ERVLB4_6q23.3 ### chr6 rmsk gene 137118356 137120905 . - . gene_id "ERVLB4_6q23.3"; transcript_id "ERVLB4_6q23.3"; locus "ERVLB4_6q23.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0750"; model_cov "1340"; model_pct "23.5"; chr6 rmsk exon 137118356 137118795 521 - . gene_id "ERVLB4_6q23.3"; transcript_id "ERVLB4_6q23.3"; locus "ERVLB4_6q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0750"; repClass "LTR"; repEnd "4514"; repFamily "ERVL"; repLeft "3955"; repStart "-1200"; chr6 rmsk exon 137118827 137119065 489 - . gene_id "ERVLB4_6q23.3"; transcript_id "ERVLB4_6q23.3"; locus "ERVLB4_6q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0750"; repClass "LTR"; repEnd "3425"; repFamily "ERVL"; repLeft "3185"; repStart "-2289"; chr6 rmsk exon 137120406 137120905 662 - . gene_id "ERVLB4_6q23.3"; transcript_id "ERVLB4_6q23.3"; locus "ERVLB4_6q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0750"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "2395"; repStart "-2778"; ### ERVLE_6q23.3d ### chr6 rmsk gene 137152779 137154029 . + . gene_id "ERVLE_6q23.3d"; transcript_id "ERVLE_6q23.3d"; locus "ERVLE_6q23.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1726"; model_cov "1110"; model_pct "19.6"; chr6 rmsk exon 137152779 137153012 603 + . gene_id "ERVLE_6q23.3d"; transcript_id "ERVLE_6q23.3d"; locus "ERVLE_6q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1726"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-1394"; repStart "4026"; chr6 rmsk exon 137153160 137153801 678 + . gene_id "ERVLE_6q23.3d"; transcript_id "ERVLE_6q23.3d"; locus "ERVLE_6q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1726"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "-594"; repStart "4372"; chr6 rmsk exon 137153860 137154029 266 + . gene_id "ERVLE_6q23.3d"; transcript_id "ERVLE_6q23.3d"; locus "ERVLE_6q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1726"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "-324"; repStart "5181"; ### MER4B_6q23.3a ### chr6 rmsk gene 137180019 137180696 . - . gene_id "MER4B_6q23.3a"; transcript_id "MER4B_6q23.3a"; locus "MER4B_6q23.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0197"; model_cov "737"; model_pct "10.9"; chr6 rmsk exon 137180019 137180696 2133 - . gene_id "MER4B_6q23.3a"; transcript_id "MER4B_6q23.3a"; locus "MER4B_6q23.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0197"; repClass "LTR"; repEnd "6731"; repFamily "ERV1"; repLeft "5994"; repStart "-27"; ### MER41_6q23.3 ### chr6 rmsk gene 137180904 137186012 . - . gene_id "MER41_6q23.3"; transcript_id "MER41_6q23.3"; locus "MER41_6q23.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0235"; model_cov "5701"; model_pct "95.9"; chr6 rmsk exon 137180904 137184125 12391 - . gene_id "MER41_6q23.3"; transcript_id "MER41_6q23.3"; locus "MER41_6q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0235"; repClass "LTR"; repEnd "5884"; repFamily "ERV1"; repLeft "1415"; repStart "-62"; chr6 rmsk exon 137184277 137184750 2423 - . gene_id "MER41_6q23.3"; transcript_id "MER41_6q23.3"; locus "MER41_6q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0235"; repClass "LTR"; repEnd "2084"; repFamily "ERV1"; repLeft "1656"; repStart "-3862"; chr6 rmsk exon 137184748 137185872 4222 - . gene_id "MER41_6q23.3"; transcript_id "MER41_6q23.3"; locus "MER41_6q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0235"; repClass "LTR"; repEnd "5555"; repFamily "ERV1"; repLeft "4800"; repStart "-391"; chr6 rmsk exon 137185952 137186012 2652 - . gene_id "MER41_6q23.3"; transcript_id "MER41_6q23.3"; locus "MER41_6q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0235"; repClass "LTR"; repEnd "-401"; repFamily "ERV1"; repLeft "-450"; repStart "-6347"; ### MER4B_6q23.3b ### chr6 rmsk gene 137186611 137191359 . - . gene_id "MER4B_6q23.3b"; transcript_id "MER4B_6q23.3b"; locus "MER4B_6q23.3b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0198"; model_cov "4178"; model_pct "61.8"; chr6 rmsk exon 137186611 137188637 20842 - . gene_id "MER4B_6q23.3b"; transcript_id "MER4B_6q23.3b"; locus "MER4B_6q23.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0198"; repClass "LTR"; repEnd "4395"; repFamily "ERV1"; repLeft "2330"; repStart "-2363"; chr6 rmsk exon 137188928 137189721 20842 - . gene_id "MER4B_6q23.3b"; transcript_id "MER4B_6q23.3b"; locus "MER4B_6q23.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0198"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "1560"; repStart "-4429"; chr6 rmsk exon 137190116 137191359 20842 - . gene_id "MER4B_6q23.3b"; transcript_id "MER4B_6q23.3b"; locus "MER4B_6q23.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0198"; repClass "LTR"; repEnd "1559"; repFamily "ERV1"; repLeft "215"; repStart "-5199"; ### ERVLE_6q23.3e ### chr6 rmsk gene 137463243 137465236 . + . gene_id "ERVLE_6q23.3e"; transcript_id "ERVLE_6q23.3e"; locus "ERVLE_6q23.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1728"; model_cov "1611"; model_pct "28.4"; chr6 rmsk exon 137463243 137464262 2547 + . gene_id "ERVLE_6q23.3e"; transcript_id "ERVLE_6q23.3e"; locus "ERVLE_6q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1728"; repClass "LTR"; repEnd "4859"; repFamily "ERVL"; repLeft "-808"; repStart "3784"; chr6 rmsk exon 137464404 137464672 708 + . gene_id "ERVLE_6q23.3e"; transcript_id "ERVLE_6q23.3e"; locus "ERVLE_6q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1728"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-351"; repStart "5041"; chr6 rmsk exon 137464977 137465236 408 + . gene_id "ERVLE_6q23.3e"; transcript_id "ERVLE_6q23.3e"; locus "ERVLE_6q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1728"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "-25"; repStart "5381"; ### MER61_6q23.3 ### chr6 rmsk gene 137652412 137657139 . + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0192"; model_cov "3918"; model_pct "75.1"; chr6 rmsk exon 137652412 137652733 1607 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0192"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr6 rmsk exon 137652736 137652823 288 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0192"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-5125"; repStart "3"; chr6 rmsk exon 137653081 137653614 2399 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0192"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "-4443"; repStart "246"; chr6 rmsk exon 137653611 137655149 9918 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0192"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-2208"; repStart "1320"; chr6 rmsk exon 137655297 137655833 9918 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0192"; repClass "LTR"; repEnd "3600"; repFamily "ERV1"; repLeft "-1617"; repStart "3010"; chr6 rmsk exon 137655833 137656821 5938 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0192"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4194"; chr6 rmsk exon 137656822 137657139 1527 + . gene_id "MER61_6q23.3"; transcript_id "MER61_6q23.3"; locus "MER61_6q23.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0192"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_6q23.3b ### chr6 rmsk gene 137690931 137694326 . + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0191"; model_cov "2351"; model_pct "40.8"; chr6 rmsk exon 137690931 137691354 1702 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "-36"; chr6 rmsk exon 137691355 137691513 947 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "1929"; repFamily "ERVL"; repLeft "-3828"; repStart "1770"; chr6 rmsk exon 137691724 137691803 442 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "1996"; repFamily "ERVL"; repLeft "-3761"; repStart "1917"; chr6 rmsk exon 137691803 137691893 594 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "3380"; repFamily "ERVL"; repLeft "-2377"; repStart "3289"; chr6 rmsk exon 137691891 137693871 11894 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3735"; chr6 rmsk exon 137693872 137694326 2002 + . gene_id "ERVL_6q23.3b"; transcript_id "ERVL_6q23.3b"; locus "ERVL_6q23.3b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0191"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVW_6q23.3a ### chr6 rmsk gene 137718928 137720499 . - . gene_id "HERVW_6q23.3a"; transcript_id "HERVW_6q23.3a"; locus "HERVW_6q23.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0147"; model_cov "1300"; model_pct "15.1"; chr6 rmsk exon 137718928 137719253 2533 - . gene_id "HERVW_6q23.3a"; transcript_id "HERVW_6q23.3a"; locus "HERVW_6q23.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0147"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr6 rmsk exon 137719258 137719545 2254 - . gene_id "HERVW_6q23.3a"; transcript_id "HERVW_6q23.3a"; locus "HERVW_6q23.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0147"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8335"; repStart "-4"; chr6 rmsk exon 137719536 137719574 268 - . gene_id "HERVW_6q23.3a"; transcript_id "HERVW_6q23.3a"; locus "HERVW_6q23.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0147"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr6 rmsk exon 137719568 137720499 17557 - . gene_id "HERVW_6q23.3a"; transcript_id "HERVW_6q23.3a"; locus "HERVW_6q23.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0147"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5044"; repStart "-2607"; ### HERVW_6q23.3b ### chr6 rmsk gene 137720646 137722702 . - . gene_id "HERVW_6q23.3b"; transcript_id "HERVW_6q23.3b"; locus "HERVW_6q23.3b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0148"; model_cov "1825"; model_pct "21.2"; chr6 rmsk exon 137720646 137722320 17557 - . gene_id "HERVW_6q23.3b"; transcript_id "HERVW_6q23.3b"; locus "HERVW_6q23.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0148"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4262"; repStart "-2607"; chr6 rmsk exon 137722633 137722702 8802 - . gene_id "HERVW_6q23.3b"; transcript_id "HERVW_6q23.3b"; locus "HERVW_6q23.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0148"; repClass "LTR"; repEnd "3285"; repFamily "ERV1"; repLeft "3217"; repStart "-5341"; ### ERV316A3_6q23.3b ### chr6 rmsk gene 138026947 138028628 . + . gene_id "ERV316A3_6q23.3b"; transcript_id "ERV316A3_6q23.3b"; locus "ERV316A3_6q23.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1310"; model_cov "977"; model_pct "18.7"; chr6 rmsk exon 138026947 138027938 1640 + . gene_id "ERV316A3_6q23.3b"; transcript_id "ERV316A3_6q23.3b"; locus "ERV316A3_6q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1310"; repClass "LTR"; repEnd "5139"; repFamily "ERVL"; repLeft "-87"; repStart "4162"; chr6 rmsk exon 138028308 138028628 529 + . gene_id "ERV316A3_6q23.3b"; transcript_id "ERV316A3_6q23.3b"; locus "ERV316A3_6q23.3b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1310"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "-240"; repStart "1"; ### ERVLE_6q23.3f ### chr6 rmsk gene 138083788 138084844 . + . gene_id "ERVLE_6q23.3f"; transcript_id "ERVLE_6q23.3f"; locus "ERVLE_6q23.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1732"; model_cov "731"; model_pct "12.9"; chr6 rmsk exon 138083788 138083856 328 + . gene_id "ERVLE_6q23.3f"; transcript_id "ERVLE_6q23.3f"; locus "ERVLE_6q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1732"; repClass "LTR"; repEnd "4589"; repFamily "ERVL"; repLeft "-1078"; repStart "4520"; chr6 rmsk exon 138084431 138084844 630 + . gene_id "ERVLE_6q23.3f"; transcript_id "ERVLE_6q23.3f"; locus "ERVLE_6q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1732"; repClass "LTR"; repEnd "4975"; repFamily "ERVL"; repLeft "-692"; repStart "4313"; ### ERV316A3_6q24.1a ### chr6 rmsk gene 138414701 138420870 . + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1311"; model_cov "4213"; model_pct "80.6"; chr6 rmsk exon 138414701 138414776 741 + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1311"; repClass "LTR"; repEnd "190"; repFamily "ERVL"; repLeft "-232"; repStart "128"; chr6 rmsk exon 138415063 138415240 741 + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1311"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-30"; repStart "191"; chr6 rmsk exon 138415371 138417293 4687 + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1311"; repClass "LTR"; repEnd "2037"; repFamily "ERVL"; repLeft "-3189"; repStart "95"; chr6 rmsk exon 138418236 138420425 6844 + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1311"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2955"; chr6 rmsk exon 138420428 138420870 864 + . gene_id "ERV316A3_6q24.1a"; transcript_id "ERV316A3_6q24.1a"; locus "ERV316A3_6q24.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1311"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "-2"; repStart "3"; ### ERVLE_6q24.1a ### chr6 rmsk gene 138737919 138744048 . + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1733"; model_cov "3306"; model_pct "58.3"; chr6 rmsk exon 138737919 138738048 1836 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-5156"; repStart "391"; chr6 rmsk exon 138738347 138738793 1836 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "976"; repFamily "ERVL"; repLeft "-4691"; repStart "512"; chr6 rmsk exon 138739104 138739184 1836 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "1041"; repFamily "ERVL"; repLeft "-4626"; repStart "977"; chr6 rmsk exon 138739471 138740430 1836 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "2012"; repFamily "ERVL"; repLeft "-3655"; repStart "1042"; chr6 rmsk exon 138740831 138741171 617 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "2364"; repFamily "ERVL"; repLeft "-3303"; repStart "2040"; chr6 rmsk exon 138742359 138742645 563 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "3438"; repFamily "ERVL"; repLeft "-2229"; repStart "3075"; chr6 rmsk exon 138742821 138743532 1879 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "3480"; repFamily "ERVL"; repLeft "-2187"; repStart "2700"; chr6 rmsk exon 138743846 138744048 1879 + . gene_id "ERVLE_6q24.1a"; transcript_id "ERVLE_6q24.1a"; locus "ERVLE_6q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1733"; repClass "LTR"; repEnd "3702"; repFamily "ERVL"; repLeft "-1965"; repStart "3481"; ### ERV316A3_6q24.1b ### chr6 rmsk gene 138997743 138998298 . + . gene_id "ERV316A3_6q24.1b"; transcript_id "ERV316A3_6q24.1b"; locus "ERV316A3_6q24.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1312"; model_cov "589"; model_pct "11.3"; chr6 rmsk exon 138997743 138998298 1646 + . gene_id "ERV316A3_6q24.1b"; transcript_id "ERV316A3_6q24.1b"; locus "ERV316A3_6q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1312"; repClass "LTR"; repEnd "4105"; repFamily "ERVL"; repLeft "-1121"; repStart "3516"; ### ERV316A3_6q24.1c ### chr6 rmsk gene 138998462 139000534 . + . gene_id "ERV316A3_6q24.1c"; transcript_id "ERV316A3_6q24.1c"; locus "ERV316A3_6q24.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1313"; model_cov "930"; model_pct "17.8"; chr6 rmsk exon 138998462 138998569 394 + . gene_id "ERV316A3_6q24.1c"; transcript_id "ERV316A3_6q24.1c"; locus "ERV316A3_6q24.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1313"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "-1514"; repStart "3604"; chr6 rmsk exon 138998661 138999209 863 + . gene_id "ERV316A3_6q24.1c"; transcript_id "ERV316A3_6q24.1c"; locus "ERV316A3_6q24.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1313"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "-358"; repStart "4304"; chr6 rmsk exon 138999741 139000000 746 + . gene_id "ERV316A3_6q24.1c"; transcript_id "ERV316A3_6q24.1c"; locus "ERV316A3_6q24.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1313"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "4863"; chr6 rmsk exon 139000107 139000534 1498 + . gene_id "ERV316A3_6q24.1c"; transcript_id "ERV316A3_6q24.1c"; locus "ERV316A3_6q24.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1313"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### MER41_6q24.1 ### chr6 rmsk gene 140190791 140195417 . + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; category "opposite*"; intModel "MER41-int"; locid "MER41-int_0239"; model_cov "4105"; model_pct "69.0"; chr6 rmsk exon 140190791 140191335 3359 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; prev_strand "-"; repClass "LTR"; repEnd "1633"; repFamily "ERV1"; repLeft "1080"; repStart "-4313"; chr6 rmsk exon 140191335 140191557 1472 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; prev_strand "-"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "403"; repStart "-5311"; chr6 rmsk exon 140191557 140191653 690 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; repClass "LTR"; repEnd "1569"; repFamily "ERV1"; repLeft "-4377"; repStart "1449"; chr6 rmsk exon 140191657 140191765 425 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1902"; chr6 rmsk exon 140191765 140192474 2993 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2163"; chr6 rmsk exon 140192474 140193625 11258 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; repClass "LTR"; repEnd "4837"; repFamily "ERV1"; repLeft "-1109"; repStart "2856"; chr6 rmsk exon 140193882 140194955 11258 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0239"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4838"; chr6 rmsk exon 140194956 140195417 3270 + . gene_id "MER41_6q24.1"; transcript_id "MER41_6q24.1"; locus "MER41_6q24.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0239"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERVLE_6q24.1b ### chr6 rmsk gene 140247523 140253262 . + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1736"; model_cov "3636"; model_pct "64.2"; chr6 rmsk exon 140247523 140247856 260 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "-5319"; repStart "14"; chr6 rmsk exon 140248566 140249204 705 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "-3735"; repStart "1293"; chr6 rmsk exon 140249493 140249731 377 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "3103"; repFamily "ERVL"; repLeft "-2564"; repStart "2878"; chr6 rmsk exon 140249851 140250998 2296 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "4132"; repFamily "ERVL"; repLeft "-1535"; repStart "2913"; chr6 rmsk exon 140251306 140251506 2296 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "-1334"; repStart "4133"; chr6 rmsk exon 140251777 140252270 693 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "4912"; repFamily "ERVL"; repLeft "-755"; repStart "4400"; chr6 rmsk exon 140252385 140252580 560 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "-384"; repStart "5089"; chr6 rmsk exon 140252966 140253262 560 + . gene_id "ERVLE_6q24.1b"; transcript_id "ERVLE_6q24.1b"; locus "ERVLE_6q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1736"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "-70"; repStart "5284"; ### HERVH_6q24.1a ### chr6 rmsk gene 140257496 140263080 . - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0599"; model_cov "4896"; model_pct "63.5"; chr6 rmsk exon 140257496 140257902 2754 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 140257903 140258279 2408 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr6 rmsk exon 140258282 140258493 1322 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 140258495 140259143 4279 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 140259146 140259639 3362 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr6 rmsk exon 140259639 140259783 727 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 140259778 140262667 15190 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 140262670 140263080 2785 - . gene_id "HERVH_6q24.1a"; transcript_id "HERVH_6q24.1a"; locus "HERVH_6q24.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0599"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_6q24.1a ### chr6 rmsk gene 140329784 140331656 . - . gene_id "HERVL_6q24.1a"; transcript_id "HERVL_6q24.1a"; locus "HERVL_6q24.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0641"; model_cov "1342"; model_pct "23.7"; chr6 rmsk exon 140329784 140330345 1969 - . gene_id "HERVL_6q24.1a"; transcript_id "HERVL_6q24.1a"; locus "HERVL_6q24.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0641"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr6 rmsk exon 140330346 140331656 28330 - . gene_id "HERVL_6q24.1a"; transcript_id "HERVL_6q24.1a"; locus "HERVL_6q24.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0641"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4312"; repStart "0"; ### HERVL_6q24.1b ### chr6 rmsk gene 140331735 140336490 . - . gene_id "HERVL_6q24.1b"; transcript_id "HERVL_6q24.1b"; locus "HERVL_6q24.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0642"; model_cov "4310"; model_pct "76.2"; chr6 rmsk exon 140331735 140335940 28330 - . gene_id "HERVL_6q24.1b"; transcript_id "HERVL_6q24.1b"; locus "HERVL_6q24.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0642"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1344"; repStart "0"; chr6 rmsk exon 140335941 140336490 1564 - . gene_id "HERVL_6q24.1b"; transcript_id "HERVL_6q24.1b"; locus "HERVL_6q24.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0642"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERVLB4_6q24.1a ### chr6 rmsk gene 140497069 140498418 . - . gene_id "ERVLB4_6q24.1a"; transcript_id "ERVLB4_6q24.1a"; locus "ERVLB4_6q24.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0752"; model_cov "954"; model_pct "16.7"; chr6 rmsk exon 140497069 140497547 1629 - . gene_id "ERVLB4_6q24.1a"; transcript_id "ERVLB4_6q24.1a"; locus "ERVLB4_6q24.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0752"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 140497548 140498418 3076 - . gene_id "ERVLB4_6q24.1a"; transcript_id "ERVLB4_6q24.1a"; locus "ERVLB4_6q24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0752"; repClass "LTR"; repEnd "3794"; repFamily "ERVL"; repLeft "2840"; repStart "-1920"; ### ERVLE_6q24.1c ### chr6 rmsk gene 140641595 140642485 . - . gene_id "ERVLE_6q24.1c"; transcript_id "ERVLE_6q24.1c"; locus "ERVLE_6q24.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1737"; model_cov "897"; model_pct "15.8"; chr6 rmsk exon 140641595 140642265 1013 - . gene_id "ERVLE_6q24.1c"; transcript_id "ERVLE_6q24.1c"; locus "ERVLE_6q24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1737"; repClass "LTR"; repEnd "4729"; repFamily "ERVL"; repLeft "4039"; repStart "-938"; chr6 rmsk exon 140642281 140642485 303 - . gene_id "ERVLE_6q24.1c"; transcript_id "ERVLE_6q24.1c"; locus "ERVLE_6q24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1737"; repClass "LTR"; repEnd "3193"; repFamily "ERVL"; repLeft "2986"; repStart "-2474"; ### HERVL_6q24.1c ### chr6 rmsk gene 140645838 140650333 . + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0643"; model_cov "3998"; model_pct "70.7"; chr6 rmsk exon 140645838 140646129 1353 + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0643"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr6 rmsk exon 140646251 140646285 1353 + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0643"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; chr6 rmsk exon 140646286 140646712 3474 + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0643"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "-5227"; repStart "1"; chr6 rmsk exon 140646801 140646965 1103 + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0643"; repClass "LTR"; repEnd "701"; repFamily "ERVL"; repLeft "-4953"; repStart "517"; chr6 rmsk exon 140646959 140650333 26205 + . gene_id "HERVL_6q24.1c"; transcript_id "HERVL_6q24.1c"; locus "HERVL_6q24.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0643"; repClass "LTR"; repEnd "4220"; repFamily "ERVL"; repLeft "-1434"; repStart "832"; ### HERVL_6q24.1d ### chr6 rmsk gene 140689914 140692716 . - . gene_id "HERVL_6q24.1d"; transcript_id "HERVL_6q24.1d"; locus "HERVL_6q24.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0644"; model_cov "2374"; model_pct "42.0"; chr6 rmsk exon 140689914 140690373 3098 - . gene_id "HERVL_6q24.1d"; transcript_id "HERVL_6q24.1d"; locus "HERVL_6q24.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0644"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr6 rmsk exon 140690374 140692716 42034 - . gene_id "HERVL_6q24.1d"; transcript_id "HERVL_6q24.1d"; locus "HERVL_6q24.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0644"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3280"; repStart "0"; ### HERVL_6q24.1e ### chr6 rmsk gene 140692782 140696387 . - . gene_id "HERVL_6q24.1e"; transcript_id "HERVL_6q24.1e"; locus "HERVL_6q24.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0645"; model_cov "3278"; model_pct "58.0"; chr6 rmsk exon 140692782 140696014 42034 - . gene_id "HERVL_6q24.1e"; transcript_id "HERVL_6q24.1e"; locus "HERVL_6q24.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0645"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2376"; repStart "0"; chr6 rmsk exon 140696015 140696078 389 - . gene_id "HERVL_6q24.1e"; transcript_id "HERVL_6q24.1e"; locus "HERVL_6q24.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0645"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "372"; repStart "0"; chr6 rmsk exon 140696147 140696387 1825 - . gene_id "HERVL_6q24.1e"; transcript_id "HERVL_6q24.1e"; locus "HERVL_6q24.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0645"; repClass "LTR"; repEnd "239"; repFamily "ERVL"; repLeft "1"; repStart "-205"; ### ERVL_6q24.1 ### chr6 rmsk gene 140750737 140752184 . + . gene_id "ERVL_6q24.1"; transcript_id "ERVL_6q24.1"; locus "ERVL_6q24.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0192"; model_cov "962"; model_pct "16.7"; chr6 rmsk exon 140750737 140751637 4335 + . gene_id "ERVL_6q24.1"; transcript_id "ERVL_6q24.1"; locus "ERVL_6q24.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0192"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "4794"; chr6 rmsk exon 140751638 140752073 1677 + . gene_id "ERVL_6q24.1"; transcript_id "ERVL_6q24.1"; locus "ERVL_6q24.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0192"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-50"; repStart "1"; chr6 rmsk exon 140752137 140752184 235 + . gene_id "ERVL_6q24.1"; transcript_id "ERVL_6q24.1"; locus "ERVL_6q24.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0192"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "473"; ### ERVLE_6q24.1d ### chr6 rmsk gene 140791988 140793570 . - . gene_id "ERVLE_6q24.1d"; transcript_id "ERVLE_6q24.1d"; locus "ERVLE_6q24.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1738"; model_cov "1977"; model_pct "34.9"; chr6 rmsk exon 140791988 140793570 2479 - . gene_id "ERVLE_6q24.1d"; transcript_id "ERVLE_6q24.1d"; locus "ERVLE_6q24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1738"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "3290"; repStart "-400"; ### ERVLB4_6q24.1b ### chr6 rmsk gene 140833078 140835208 . + . gene_id "ERVLB4_6q24.1b"; transcript_id "ERVLB4_6q24.1b"; locus "ERVLB4_6q24.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0753"; model_cov "2197"; model_pct "38.4"; chr6 rmsk exon 140833078 140835208 4986 + . gene_id "ERVLB4_6q24.1b"; transcript_id "ERVLB4_6q24.1b"; locus "ERVLB4_6q24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0753"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "-229"; repStart "3288"; ### MER61_6q24.1a ### chr6 rmsk gene 140893344 140895551 . - . gene_id "MER61_6q24.1a"; transcript_id "MER61_6q24.1a"; locus "MER61_6q24.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0193"; model_cov "1875"; model_pct "35.9"; chr6 rmsk exon 140893344 140893698 1415 - . gene_id "MER61_6q24.1a"; transcript_id "MER61_6q24.1a"; locus "MER61_6q24.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0193"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 140893700 140895551 23788 - . gene_id "MER61_6q24.1a"; transcript_id "MER61_6q24.1a"; locus "MER61_6q24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0193"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "3341"; repStart "-1"; ### MER61_6q24.1b ### chr6 rmsk gene 140895592 140898542 . - . gene_id "MER61_6q24.1b"; transcript_id "MER61_6q24.1b"; locus "MER61_6q24.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0194"; model_cov "2629"; model_pct "50.4"; chr6 rmsk exon 140895592 140897497 23788 - . gene_id "MER61_6q24.1b"; transcript_id "MER61_6q24.1b"; locus "MER61_6q24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0194"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "3284"; repStart "-1"; chr6 rmsk exon 140897539 140898219 3041 - . gene_id "MER61_6q24.1b"; transcript_id "MER61_6q24.1b"; locus "MER61_6q24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0194"; repClass "LTR"; repEnd "699"; repFamily "ERV1"; repLeft "2"; repStart "-4518"; chr6 rmsk exon 140898220 140898542 1252 - . gene_id "MER61_6q24.1b"; transcript_id "MER61_6q24.1b"; locus "MER61_6q24.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0194"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6q24.1d ### chr6 rmsk gene 141023967 141027475 . + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1315"; model_cov "2286"; model_pct "43.7"; chr6 rmsk exon 141023967 141024378 1084 + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1315"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-17"; repStart "1"; chr6 rmsk exon 141024406 141024738 604 + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1315"; repClass "LTR"; repEnd "581"; repFamily "ERVL"; repLeft "-4645"; repStart "241"; chr6 rmsk exon 141024811 141026266 2480 + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1315"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "-3112"; repStart "710"; chr6 rmsk exon 141026337 141026793 1203 + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1315"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "-644"; repStart "4040"; chr6 rmsk exon 141027050 141027475 1108 + . gene_id "ERV316A3_6q24.1d"; transcript_id "ERV316A3_6q24.1d"; locus "ERV316A3_6q24.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1315"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "17"; ### ERV316A3_6q24.1e ### chr6 rmsk gene 141051398 141054393 . + . gene_id "ERV316A3_6q24.1e"; transcript_id "ERV316A3_6q24.1e"; locus "ERV316A3_6q24.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1317"; model_cov "2821"; model_pct "54.0"; chr6 rmsk exon 141051398 141051721 298 + . gene_id "ERV316A3_6q24.1e"; transcript_id "ERV316A3_6q24.1e"; locus "ERV316A3_6q24.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1317"; repClass "LTR"; repEnd "677"; repFamily "ERVL"; repLeft "-4549"; repStart "362"; chr6 rmsk exon 141051775 141054046 3642 + . gene_id "ERV316A3_6q24.1e"; transcript_id "ERV316A3_6q24.1e"; locus "ERV316A3_6q24.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1317"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2146"; repStart "772"; chr6 rmsk exon 141054203 141054393 463 + . gene_id "ERV316A3_6q24.1e"; transcript_id "ERV316A3_6q24.1e"; locus "ERV316A3_6q24.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1317"; repClass "LTR"; repEnd "4481"; repFamily "ERVL"; repLeft "-745"; repStart "4283"; ### ERV316A3_6q24.1f ### chr6 rmsk gene 141054632 141055248 . + . gene_id "ERV316A3_6q24.1f"; transcript_id "ERV316A3_6q24.1f"; locus "ERV316A3_6q24.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1318"; model_cov "643"; model_pct "12.3"; chr6 rmsk exon 141054632 141055248 1085 + . gene_id "ERV316A3_6q24.1f"; transcript_id "ERV316A3_6q24.1f"; locus "ERV316A3_6q24.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1318"; repClass "LTR"; repEnd "2959"; repFamily "ERVL"; repLeft "-2267"; repStart "2316"; ### HERVL_6q24.1f ### chr6 rmsk gene 141068751 141070459 . - . gene_id "HERVL_6q24.1f"; transcript_id "HERVL_6q24.1f"; locus "HERVL_6q24.1f"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0646"; model_cov "1759"; model_pct "31.1"; chr6 rmsk exon 141068751 141070459 11918 - . gene_id "HERVL_6q24.1f"; transcript_id "HERVL_6q24.1f"; locus "HERVL_6q24.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0646"; repClass "LTR"; repEnd "3654"; repFamily "ERVL"; repLeft "1895"; repStart "-2000"; ### HUERSP3B_6q24.1 ### chr6 rmsk gene 141148318 141151389 . - . gene_id "HUERSP3B_6q24.1"; transcript_id "HUERSP3B_6q24.1"; locus "HUERSP3B_6q24.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0068"; model_cov "1902"; model_pct "25.6"; chr6 rmsk exon 141148318 141148879 4051 - . gene_id "HUERSP3B_6q24.1"; transcript_id "HUERSP3B_6q24.1"; locus "HUERSP3B_6q24.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0068"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "75"; repStart "0"; chr6 rmsk exon 141149194 141149267 4051 - . gene_id "HUERSP3B_6q24.1"; transcript_id "HUERSP3B_6q24.1"; locus "HUERSP3B_6q24.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0068"; repClass "LTR"; repEnd "74"; repFamily "ERV1"; repLeft "1"; repStart "-570"; chr6 rmsk exon 141149269 141151188 13030 - . gene_id "HUERSP3B_6q24.1"; transcript_id "HUERSP3B_6q24.1"; locus "HUERSP3B_6q24.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0068"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "5509"; repStart "-7"; chr6 rmsk exon 141151189 141151389 1292 - . gene_id "HUERSP3B_6q24.1"; transcript_id "HUERSP3B_6q24.1"; locus "HUERSP3B_6q24.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0068"; repClass "LTR"; repEnd "219"; repFamily "ERV1"; repLeft "1"; repStart "-425"; ### ERV316A3_6q24.1g ### chr6 rmsk gene 141204309 141210559 . - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1319"; model_cov "3038"; model_pct "58.1"; chr6 rmsk exon 141204309 141204417 438 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "4467"; repStart "-649"; chr6 rmsk exon 141204699 141205149 1128 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "3675"; repStart "-1103"; chr6 rmsk exon 141207190 141209274 1128 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "3678"; repFamily "ERVL"; repLeft "1677"; repStart "-1548"; chr6 rmsk exon 141209523 141209726 309 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "806"; repFamily "ERVL"; repLeft "601"; repStart "-4420"; chr6 rmsk exon 141210175 141210444 353 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "231"; repStart "-4721"; chr6 rmsk exon 141210445 141210559 368 - . gene_id "ERV316A3_6q24.1g"; transcript_id "ERV316A3_6q24.1g"; locus "ERV316A3_6q24.1g"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1319"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "339"; repStart "0"; ### HERVH_6q24.1b ### chr6 rmsk gene 141452825 141460680 . + . gene_id "HERVH_6q24.1b"; transcript_id "HERVH_6q24.1b"; locus "HERVH_6q24.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0600"; model_cov "7222"; model_pct "93.6"; chr6 rmsk exon 141452825 141453224 2709 + . gene_id "HERVH_6q24.1b"; transcript_id "HERVH_6q24.1b"; locus "HERVH_6q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0600"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 141453227 141457062 25320 + . gene_id "HERVH_6q24.1b"; transcript_id "HERVH_6q24.1b"; locus "HERVH_6q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0600"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "1"; chr6 rmsk exon 141457062 141460290 24954 + . gene_id "HERVH_6q24.1b"; transcript_id "HERVH_6q24.1b"; locus "HERVH_6q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0600"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4481"; chr6 rmsk exon 141460291 141460680 2548 + . gene_id "HERVH_6q24.1b"; transcript_id "HERVH_6q24.1b"; locus "HERVH_6q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0600"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR25_6q24.1 ### chr6 rmsk gene 141467145 141471322 . - . gene_id "LTR25_6q24.1"; transcript_id "LTR25_6q24.1"; locus "LTR25_6q24.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0056"; model_cov "3370"; model_pct "46.9"; chr6 rmsk exon 141467145 141469950 15654 - . gene_id "LTR25_6q24.1"; transcript_id "LTR25_6q24.1"; locus "LTR25_6q24.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0056"; repClass "LTR"; repEnd "7123"; repFamily "ERV1"; repLeft "4375"; repStart "-65"; chr6 rmsk exon 141470220 141471322 15654 - . gene_id "LTR25_6q24.1"; transcript_id "LTR25_6q24.1"; locus "LTR25_6q24.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0056"; repClass "LTR"; repEnd "4374"; repFamily "ERV1"; repLeft "3752"; repStart "-2814"; ### MER61_6q24.1c ### chr6 rmsk gene 141471319 141472818 . - . gene_id "MER61_6q24.1c"; transcript_id "MER61_6q24.1c"; locus "MER61_6q24.1c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0195"; model_cov "1392"; model_pct "26.7"; chr6 rmsk exon 141471319 141472255 3438 - . gene_id "MER61_6q24.1c"; transcript_id "MER61_6q24.1c"; locus "MER61_6q24.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0195"; repClass "LTR"; repEnd "4825"; repFamily "ERV1"; repLeft "4045"; repStart "-392"; chr6 rmsk exon 141472227 141472818 2471 - . gene_id "MER61_6q24.1c"; transcript_id "MER61_6q24.1c"; locus "MER61_6q24.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0195"; repClass "LTR"; repEnd "-1079"; repFamily "ERV1"; repLeft "-1691"; repStart "-6296"; ### HERVL_6q24.1g ### chr6 rmsk gene 141654494 141656654 . + . gene_id "HERVL_6q24.1g"; transcript_id "HERVL_6q24.1g"; locus "HERVL_6q24.1g"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0647"; model_cov "2143"; model_pct "37.9"; chr6 rmsk exon 141654494 141656654 15648 + . gene_id "HERVL_6q24.1g"; transcript_id "HERVL_6q24.1g"; locus "HERVL_6q24.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0647"; repClass "LTR"; repEnd "2344"; repFamily "ERVL"; repLeft "-3310"; repStart "201"; ### HERVL40_6q24.1 ### chr6 rmsk gene 141720589 141724181 . - . gene_id "HERVL40_6q24.1"; transcript_id "HERVL40_6q24.1"; locus "HERVL40_6q24.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0193"; model_cov "2809"; model_pct "50.8"; chr6 rmsk exon 141720589 141720973 941 - . gene_id "HERVL40_6q24.1"; transcript_id "HERVL40_6q24.1"; locus "HERVL40_6q24.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0193"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "1"; repStart "-17"; chr6 rmsk exon 141720990 141722737 6447 - . gene_id "HERVL40_6q24.1"; transcript_id "HERVL40_6q24.1"; locus "HERVL40_6q24.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0193"; repClass "LTR"; repEnd "5511"; repFamily "ERVL"; repLeft "3736"; repStart "-19"; chr6 rmsk exon 141723125 141724181 6447 - . gene_id "HERVL40_6q24.1"; transcript_id "HERVL40_6q24.1"; locus "HERVL40_6q24.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0193"; repClass "LTR"; repEnd "3735"; repFamily "ERVL"; repLeft "2701"; repStart "-1795"; ### MER61_6q24.1d ### chr6 rmsk gene 141831663 141833672 . + . gene_id "MER61_6q24.1d"; transcript_id "MER61_6q24.1d"; locus "MER61_6q24.1d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0196"; model_cov "1704"; model_pct "32.7"; chr6 rmsk exon 141831663 141833346 10811 + . gene_id "MER61_6q24.1d"; transcript_id "MER61_6q24.1d"; locus "MER61_6q24.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0196"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3513"; chr6 rmsk exon 141833347 141833672 1596 + . gene_id "MER61_6q24.1d"; transcript_id "MER61_6q24.1d"; locus "MER61_6q24.1d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0196"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6q24.1h ### chr6 rmsk gene 141853079 141856872 . - . gene_id "ERV316A3_6q24.1h"; transcript_id "ERV316A3_6q24.1h"; locus "ERV316A3_6q24.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1320"; model_cov "2643"; model_pct "50.6"; chr6 rmsk exon 141853079 141853537 1045 - . gene_id "ERV316A3_6q24.1h"; transcript_id "ERV316A3_6q24.1h"; locus "ERV316A3_6q24.1h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1320"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr6 rmsk exon 141853541 141855268 3780 - . gene_id "ERV316A3_6q24.1h"; transcript_id "ERV316A3_6q24.1h"; locus "ERV316A3_6q24.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1320"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "3437"; repStart "-4"; chr6 rmsk exon 141855900 141856581 878 - . gene_id "ERV316A3_6q24.1h"; transcript_id "ERV316A3_6q24.1h"; locus "ERV316A3_6q24.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1320"; repClass "LTR"; repEnd "3030"; repFamily "ERVL"; repLeft "2345"; repStart "-2196"; chr6 rmsk exon 141856705 141856872 466 - . gene_id "ERV316A3_6q24.1h"; transcript_id "ERV316A3_6q24.1h"; locus "ERV316A3_6q24.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1320"; repClass "LTR"; repEnd "1934"; repFamily "ERVL"; repLeft "1761"; repStart "-3292"; ### ERVLE_6q24.1e ### chr6 rmsk gene 141925779 141927023 . + . gene_id "ERVLE_6q24.1e"; transcript_id "ERVLE_6q24.1e"; locus "ERVLE_6q24.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1740"; model_cov "1110"; model_pct "19.6"; chr6 rmsk exon 141925779 141926260 943 + . gene_id "ERVLE_6q24.1e"; transcript_id "ERVLE_6q24.1e"; locus "ERVLE_6q24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1740"; repClass "LTR"; repEnd "3360"; repFamily "ERVL"; repLeft "-2307"; repStart "2874"; chr6 rmsk exon 141926336 141926571 469 + . gene_id "ERVLE_6q24.1e"; transcript_id "ERVLE_6q24.1e"; locus "ERVLE_6q24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1740"; repClass "LTR"; repEnd "3764"; repFamily "ERVL"; repLeft "-1903"; repStart "3517"; chr6 rmsk exon 141926651 141927023 778 + . gene_id "ERVLE_6q24.1e"; transcript_id "ERVLE_6q24.1e"; locus "ERVLE_6q24.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1740"; repClass "LTR"; repEnd "4356"; repFamily "ERVL"; repLeft "-1311"; repStart "3979"; ### PABLB_6q24.1 ### chr6 rmsk gene 141957435 141964848 . + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0043"; model_cov "6383"; model_pct "89.6"; chr6 rmsk exon 141957435 141958667 3833 + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0043"; repClass "LTR"; repEnd "1675"; repFamily "ERV1"; repLeft "-5447"; repStart "475"; chr6 rmsk exon 141959066 141960628 3833 + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0043"; repClass "LTR"; repEnd "3250"; repFamily "ERV1"; repLeft "-3872"; repStart "1676"; chr6 rmsk exon 141960932 141963491 3833 + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0043"; repClass "LTR"; repEnd "5808"; repFamily "ERV1"; repLeft "-1314"; repStart "3251"; chr6 rmsk exon 141963796 141963867 3833 + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0043"; repClass "LTR"; repEnd "5890"; repFamily "ERV1"; repLeft "-1232"; repStart "5809"; chr6 rmsk exon 141964009 141964848 3833 + . gene_id "PABLB_6q24.1"; transcript_id "PABLB_6q24.1"; locus "PABLB_6q24.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0043"; repClass "LTR"; repEnd "6862"; repFamily "ERV1"; repLeft "-260"; repStart "5891"; ### HERVH_6q24.1c ### chr6 rmsk gene 142015666 142021782 . + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0601"; model_cov "5266"; model_pct "68.3"; chr6 rmsk exon 142015666 142016117 3427 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 142016120 142020058 25093 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr6 rmsk exon 142020061 142020725 4238 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 142020723 142020953 1346 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr6 rmsk exon 142020952 142021331 2397 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr6 rmsk exon 142021332 142021782 3465 + . gene_id "HERVH_6q24.1c"; transcript_id "HERVH_6q24.1c"; locus "HERVH_6q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0601"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_6q24.1c ### chr6 rmsk gene 142193649 142194212 . + . gene_id "ERVLB4_6q24.1c"; transcript_id "ERVLB4_6q24.1c"; locus "ERVLB4_6q24.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0755"; model_cov "587"; model_pct "10.3"; chr6 rmsk exon 142193649 142194212 3606 + . gene_id "ERVLB4_6q24.1c"; transcript_id "ERVLB4_6q24.1c"; locus "ERVLB4_6q24.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0755"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "-2691"; repStart "2436"; ### ERV316A3_6q24.2a ### chr6 rmsk gene 142526409 142528367 . - . gene_id "ERV316A3_6q24.2a"; transcript_id "ERV316A3_6q24.2a"; locus "ERV316A3_6q24.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1322"; model_cov "1562"; model_pct "29.9"; chr6 rmsk exon 142526409 142526726 774 - . gene_id "ERV316A3_6q24.2a"; transcript_id "ERV316A3_6q24.2a"; locus "ERV316A3_6q24.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1322"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "126"; repStart "0"; chr6 rmsk exon 142526791 142527412 1241 - . gene_id "ERV316A3_6q24.2a"; transcript_id "ERV316A3_6q24.2a"; locus "ERV316A3_6q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1322"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4466"; repStart "-3"; chr6 rmsk exon 142527554 142528367 2043 - . gene_id "ERV316A3_6q24.2a"; transcript_id "ERV316A3_6q24.2a"; locus "ERV316A3_6q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1322"; repClass "LTR"; repEnd "4422"; repFamily "ERVL"; repLeft "3617"; repStart "-804"; ### HERVH48_6q24.2 ### chr6 rmsk gene 142536479 142543225 . + . gene_id "HERVH48_6q24.2"; transcript_id "HERVH48_6q24.2"; locus "HERVH48_6q24.2"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0023"; model_cov "6102"; model_pct "91.7"; chr6 rmsk exon 142536479 142536875 2837 + . gene_id "HERVH48_6q24.2"; transcript_id "HERVH48_6q24.2"; locus "HERVH48_6q24.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0023"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "-10"; repStart "1"; chr6 rmsk exon 142536876 142540902 25162 + . gene_id "HERVH48_6q24.2"; transcript_id "HERVH48_6q24.2"; locus "HERVH48_6q24.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0023"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "-2526"; repStart "1"; chr6 rmsk exon 142540885 142542834 13645 + . gene_id "HERVH48_6q24.2"; transcript_id "HERVH48_6q24.2"; locus "HERVH48_6q24.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0023"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "4679"; chr6 rmsk exon 142542839 142543225 2828 + . gene_id "HERVH48_6q24.2"; transcript_id "HERVH48_6q24.2"; locus "HERVH48_6q24.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0023"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### MER41_6q24.2a ### chr6 rmsk gene 142571824 142577001 . + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0240"; model_cov "2837"; model_pct "47.7"; chr6 rmsk exon 142571824 142572370 3817 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0240"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 142572371 142572989 4243 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "-5322"; repStart "1"; chr6 rmsk exon 142575231 142575300 4243 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "689"; repFamily "ERV1"; repLeft "-5257"; repStart "625"; chr6 rmsk exon 142575302 142575652 2066 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-4184"; repStart "1392"; chr6 rmsk exon 142575657 142575803 711 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-4908"; repStart "890"; chr6 rmsk exon 142575800 142576547 4458 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2167"; chr6 rmsk exon 142576535 142577001 1892 + . gene_id "MER41_6q24.2a"; transcript_id "MER41_6q24.2a"; locus "MER41_6q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0240"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "-2302"; repStart "2791"; ### MER41_6q24.2b ### chr6 rmsk gene 142583415 142585826 . + . gene_id "MER41_6q24.2b"; transcript_id "MER41_6q24.2b"; locus "MER41_6q24.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0241"; model_cov "3401"; model_pct "57.2"; chr6 rmsk exon 142583415 142585274 11561 + . gene_id "MER41_6q24.2b"; transcript_id "MER41_6q24.2b"; locus "MER41_6q24.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0241"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "2542"; chr6 rmsk exon 142585275 142585826 4028 + . gene_id "MER41_6q24.2b"; transcript_id "MER41_6q24.2b"; locus "MER41_6q24.2b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0241"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_6q24.2 ### chr6 rmsk gene 142971408 142972054 . + . gene_id "ERVLB4_6q24.2"; transcript_id "ERVLB4_6q24.2"; locus "ERVLB4_6q24.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0756"; model_cov "637"; model_pct "11.1"; chr6 rmsk exon 142971408 142972054 1282 + . gene_id "ERVLB4_6q24.2"; transcript_id "ERVLB4_6q24.2"; locus "ERVLB4_6q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0756"; repClass "LTR"; repEnd "2591"; repFamily "ERVL"; repLeft "-3123"; repStart "1954"; ### HERVW_6q24.2a ### chr6 rmsk gene 143079801 143087712 . - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0149"; model_cov "7043"; model_pct "81.6"; chr6 rmsk exon 143079801 143080127 2087 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr6 rmsk exon 143080128 143080420 2319 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr6 rmsk exon 143080411 143080449 279 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr6 rmsk exon 143080446 143085197 36756 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "2430"; repStart "-1479"; chr6 rmsk exon 143085183 143087189 13736 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "17"; repStart "-6612"; chr6 rmsk exon 143087206 143087712 3251 - . gene_id "HERVW_6q24.2a"; transcript_id "HERVW_6q24.2a"; locus "HERVW_6q24.2a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0149"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "253"; repStart "0"; ### HERVL_6q24.2a ### chr6 rmsk gene 143868226 143872553 . - . gene_id "HERVL_6q24.2a"; transcript_id "HERVL_6q24.2a"; locus "HERVL_6q24.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0648"; model_cov "3844"; model_pct "68.0"; chr6 rmsk exon 143868226 143868670 3080 - . gene_id "HERVL_6q24.2a"; transcript_id "HERVL_6q24.2a"; locus "HERVL_6q24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0648"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 143868671 143869288 4800 - . gene_id "HERVL_6q24.2a"; transcript_id "HERVL_6q24.2a"; locus "HERVL_6q24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0648"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5036"; repStart "0"; chr6 rmsk exon 143869286 143872553 34384 - . gene_id "HERVL_6q24.2a"; transcript_id "HERVL_6q24.2a"; locus "HERVL_6q24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0648"; repClass "LTR"; repEnd "4690"; repFamily "ERVL"; repLeft "1464"; repStart "-964"; ### HERVL_6q24.2b ### chr6 rmsk gene 143875136 143877035 . - . gene_id "HERVL_6q24.2b"; transcript_id "HERVL_6q24.2b"; locus "HERVL_6q24.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0649"; model_cov "1456"; model_pct "25.8"; chr6 rmsk exon 143875136 143876571 34384 - . gene_id "HERVL_6q24.2b"; transcript_id "HERVL_6q24.2b"; locus "HERVL_6q24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0649"; repClass "LTR"; repEnd "1463"; repFamily "ERVL"; repLeft "7"; repStart "-4191"; chr6 rmsk exon 143876576 143877035 3356 - . gene_id "HERVL_6q24.2b"; transcript_id "HERVL_6q24.2b"; locus "HERVL_6q24.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0649"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVW_6q24.2b ### chr6 rmsk gene 144116325 144121561 . - . gene_id "HERVW_6q24.2b"; transcript_id "HERVW_6q24.2b"; locus "HERVW_6q24.2b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0150"; model_cov "4357"; model_pct "50.5"; chr6 rmsk exon 144116325 144116650 2519 - . gene_id "HERVW_6q24.2b"; transcript_id "HERVW_6q24.2b"; locus "HERVW_6q24.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0150"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr6 rmsk exon 144116651 144116943 2261 - . gene_id "HERVW_6q24.2b"; transcript_id "HERVW_6q24.2b"; locus "HERVW_6q24.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0150"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr6 rmsk exon 144116966 144121030 32633 - . gene_id "HERVW_6q24.2b"; transcript_id "HERVW_6q24.2b"; locus "HERVW_6q24.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0150"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "1953"; repStart "-2607"; chr6 rmsk exon 144121063 144121561 3524 - . gene_id "HERVW_6q24.2b"; transcript_id "HERVW_6q24.2b"; locus "HERVW_6q24.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0150"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "260"; repStart "-1"; ### HERVH_6q24.2 ### chr6 rmsk gene 144923175 144928858 . + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0602"; model_cov "4911"; model_pct "63.7"; chr6 rmsk exon 144923175 144923606 2637 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "23"; chr6 rmsk exon 144923609 144926571 18802 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 144926566 144926713 698 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr6 rmsk exon 144926706 144927208 3234 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 144927211 144927829 2899 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 144927823 144928047 1263 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr6 rmsk exon 144928048 144928424 2342 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 144928425 144928858 2647 + . gene_id "HERVH_6q24.2"; transcript_id "HERVH_6q24.2"; locus "HERVH_6q24.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0602"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_6q24.2 ### chr6 rmsk gene 145047955 145049694 . - . gene_id "MER34B_6q24.2"; transcript_id "MER34B_6q24.2"; locus "MER34B_6q24.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0130"; model_cov "1269"; model_pct "23.7"; chr6 rmsk exon 145047955 145049247 3361 - . gene_id "MER34B_6q24.2"; transcript_id "MER34B_6q24.2"; locus "MER34B_6q24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0130"; repClass "LTR"; repEnd "2396"; repFamily "ERV1"; repLeft "1245"; repStart "-2960"; chr6 rmsk exon 145049591 145049694 378 - . gene_id "MER34B_6q24.2"; transcript_id "MER34B_6q24.2"; locus "MER34B_6q24.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0130"; repClass "LTR"; repEnd "-534"; repFamily "ERV1"; repLeft "-652"; repStart "-5890"; ### ERV316A3_6q24.2b ### chr6 rmsk gene 145053170 145059928 . + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1324"; model_cov "4965"; model_pct "95.0"; chr6 rmsk exon 145053170 145053592 1520 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-9"; repStart "13"; chr6 rmsk exon 145053820 145054058 2313 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "737"; repFamily "ERVL"; repLeft "-4489"; repStart "481"; chr6 rmsk exon 145054347 145054358 2313 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "740"; repFamily "ERVL"; repLeft "-4486"; repStart "738"; chr6 rmsk exon 145054674 145058523 5506 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "4459"; repFamily "ERVL"; repLeft "-767"; repStart "511"; chr6 rmsk exon 145058841 145059564 5506 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "-7"; repStart "4460"; chr6 rmsk exon 145059580 145059928 891 + . gene_id "ERV316A3_6q24.2b"; transcript_id "ERV316A3_6q24.2b"; locus "ERV316A3_6q24.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1324"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "-76"; repStart "13"; ### HERVH_6q24.3a ### chr6 rmsk gene 145103186 145108857 . - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0603"; model_cov "4906"; model_pct "63.6"; chr6 rmsk exon 145103186 145103589 2555 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 145103590 145103965 2170 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr6 rmsk exon 145103966 145104182 1272 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 145104184 145104846 4269 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 145104849 145105350 3089 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 145105341 145105488 804 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 145105483 145108456 19149 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 145108459 145108857 2680 - . gene_id "HERVH_6q24.3a"; transcript_id "HERVH_6q24.3a"; locus "HERVH_6q24.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0603"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_6q24.3a ### chr6 rmsk gene 145345883 145346865 . + . gene_id "ERVLE_6q24.3a"; transcript_id "ERVLE_6q24.3a"; locus "ERVLE_6q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1744"; model_cov "628"; model_pct "11.1"; chr6 rmsk exon 145345883 145346200 503 + . gene_id "ERVLE_6q24.3a"; transcript_id "ERVLE_6q24.3a"; locus "ERVLE_6q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1744"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "-800"; repStart "4501"; chr6 rmsk exon 145346604 145346865 503 + . gene_id "ERVLE_6q24.3a"; transcript_id "ERVLE_6q24.3a"; locus "ERVLE_6q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1744"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "-537"; repStart "4868"; ### ERVLE_6q24.3b ### chr6 rmsk gene 145513579 145516278 . + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1746"; model_cov "1689"; model_pct "29.8"; chr6 rmsk exon 145513579 145513759 360 + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1746"; repClass "LTR"; repEnd "197"; repFamily "ERVL"; repLeft "-5470"; repStart "15"; chr6 rmsk exon 145514203 145514619 2151 + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1746"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4517"; repStart "705"; chr6 rmsk exon 145514829 145515377 2151 + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1746"; repClass "LTR"; repEnd "1654"; repFamily "ERVL"; repLeft "-4013"; repStart "1151"; chr6 rmsk exon 145515742 145516057 2151 + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1746"; repClass "LTR"; repEnd "1973"; repFamily "ERVL"; repLeft "-3694"; repStart "1655"; chr6 rmsk exon 145516047 145516278 681 + . gene_id "ERVLE_6q24.3b"; transcript_id "ERVLE_6q24.3b"; locus "ERVLE_6q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1746"; repClass "LTR"; repEnd "2400"; repFamily "ERVL"; repLeft "-3267"; repStart "2159"; ### HML5_6q24.3 ### chr6 rmsk gene 145531054 145532741 . + . gene_id "HML5_6q24.3"; transcript_id "HML5_6q24.3"; locus "HML5_6q24.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0054"; model_cov "914"; model_pct "13.4"; chr6 rmsk exon 145531054 145531304 936 + . gene_id "HML5_6q24.3"; transcript_id "HML5_6q24.3"; locus "HML5_6q24.3"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0054"; repClass "LTR"; repEnd "367"; repFamily "ERVK"; repLeft "-159"; repStart "31"; chr6 rmsk exon 145531305 145531851 3799 + . gene_id "HML5_6q24.3"; transcript_id "HML5_6q24.3"; locus "HML5_6q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0054"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "-1758"; repStart "4524"; chr6 rmsk exon 145531822 145532235 1978 + . gene_id "HML5_6q24.3"; transcript_id "HML5_6q24.3"; locus "HML5_6q24.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0054"; repClass "LTR"; repEnd "5106"; repFamily "ERVK"; repLeft "-1731"; repStart "4747"; chr6 rmsk exon 145532236 145532741 3311 + . gene_id "HML5_6q24.3"; transcript_id "HML5_6q24.3"; locus "HML5_6q24.3"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0054"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_6q24.3a ### chr6 rmsk gene 145569809 145573736 . - . gene_id "HERVL_6q24.3a"; transcript_id "HERVL_6q24.3a"; locus "HERVL_6q24.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0651"; model_cov "3529"; model_pct "62.4"; chr6 rmsk exon 145569809 145570254 3416 - . gene_id "HERVL_6q24.3a"; transcript_id "HERVL_6q24.3a"; locus "HERVL_6q24.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0651"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 145570255 145573736 43800 - . gene_id "HERVL_6q24.3a"; transcript_id "HERVL_6q24.3a"; locus "HERVL_6q24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0651"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2125"; repStart "0"; ### HERVL_6q24.3b ### chr6 rmsk gene 145573799 145575892 . - . gene_id "HERVL_6q24.3b"; transcript_id "HERVL_6q24.3b"; locus "HERVL_6q24.3b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0652"; model_cov "2123"; model_pct "37.5"; chr6 rmsk exon 145573799 145575892 43800 - . gene_id "HERVL_6q24.3b"; transcript_id "HERVL_6q24.3b"; locus "HERVL_6q24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0652"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3531"; repStart "0"; ### ERVLE_6q24.3c ### chr6 rmsk gene 145754552 145756579 . + . gene_id "ERVLE_6q24.3c"; transcript_id "ERVLE_6q24.3c"; locus "ERVLE_6q24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1747"; model_cov "1418"; model_pct "25.0"; chr6 rmsk exon 145754552 145754748 259 + . gene_id "ERVLE_6q24.3c"; transcript_id "ERVLE_6q24.3c"; locus "ERVLE_6q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1747"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-5115"; repStart "358"; chr6 rmsk exon 145754869 145755273 544 + . gene_id "ERVLE_6q24.3c"; transcript_id "ERVLE_6q24.3c"; locus "ERVLE_6q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1747"; repClass "LTR"; repEnd "1873"; repFamily "ERVL"; repLeft "-3794"; repStart "1476"; chr6 rmsk exon 145755756 145756014 670 + . gene_id "ERVLE_6q24.3c"; transcript_id "ERVLE_6q24.3c"; locus "ERVLE_6q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1747"; repClass "LTR"; repEnd "3100"; repFamily "ERVL"; repLeft "-2567"; repStart "2829"; chr6 rmsk exon 145756036 145756579 1270 + . gene_id "ERVLE_6q24.3c"; transcript_id "ERVLE_6q24.3c"; locus "ERVLE_6q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1747"; repClass "LTR"; repEnd "3135"; repFamily "ERVL"; repLeft "-2532"; repStart "2579"; ### ERVL_6q24.3 ### chr6 rmsk gene 145784612 145789228 . + . gene_id "ERVL_6q24.3"; transcript_id "ERVL_6q24.3"; locus "ERVL_6q24.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0193"; model_cov "2699"; model_pct "46.9"; chr6 rmsk exon 145784612 145785981 8020 + . gene_id "ERVL_6q24.3"; transcript_id "ERVL_6q24.3"; locus "ERVL_6q24.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0193"; repClass "LTR"; repEnd "4483"; repFamily "ERVL"; repLeft "-1274"; repStart "3059"; chr6 rmsk exon 145787342 145788474 6917 + . gene_id "ERVL_6q24.3"; transcript_id "ERVL_6q24.3"; locus "ERVL_6q24.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0193"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4482"; chr6 rmsk exon 145788543 145789228 3211 + . gene_id "ERVL_6q24.3"; transcript_id "ERVL_6q24.3"; locus "ERVL_6q24.3"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0193"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_6q24.3c ### chr6 rmsk gene 145786023 145787348 . - . gene_id "HERVL_6q24.3c"; transcript_id "HERVL_6q24.3c"; locus "HERVL_6q24.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0653"; model_cov "898"; model_pct "15.9"; chr6 rmsk exon 145786023 145786037 2711 - . gene_id "HERVL_6q24.3c"; transcript_id "HERVL_6q24.3c"; locus "HERVL_6q24.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0653"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "390"; repStart "-41"; chr6 rmsk exon 145786076 145786451 2711 - . gene_id "HERVL_6q24.3c"; transcript_id "HERVL_6q24.3c"; locus "HERVL_6q24.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0653"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr6 rmsk exon 145786452 145787348 7072 - . gene_id "HERVL_6q24.3c"; transcript_id "HERVL_6q24.3c"; locus "HERVL_6q24.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0653"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4756"; repStart "0"; ### ERV316A3_6q24.3a ### chr6 rmsk gene 146197487 146201059 . - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1326"; model_cov "2512"; model_pct "48.1"; chr6 rmsk exon 146197487 146197785 826 - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1326"; repClass "LTR"; repEnd "2649"; repFamily "ERVL"; repLeft "2362"; repStart "-2577"; chr6 rmsk exon 146198191 146198935 2185 - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1326"; repClass "LTR"; repEnd "2350"; repFamily "ERVL"; repLeft "1577"; repStart "-2876"; chr6 rmsk exon 146198941 146199737 3473 - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1326"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "634"; repStart "-3765"; chr6 rmsk exon 146199971 146200632 3473 - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1326"; repClass "LTR"; repEnd "633"; repFamily "ERVL"; repLeft "8"; repStart "-4593"; chr6 rmsk exon 146200636 146201059 1204 - . gene_id "ERV316A3_6q24.3a"; transcript_id "ERV316A3_6q24.3a"; locus "ERV316A3_6q24.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1326"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### HERVH_6q24.3b ### chr6 rmsk gene 146450469 146456469 . - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0604"; model_cov "4689"; model_pct "60.8"; chr6 rmsk exon 146450469 146450901 2658 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 146450902 146451501 2507 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 146451499 146452115 3046 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 146452118 146452620 3249 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr6 rmsk exon 146452611 146452758 827 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 146452753 146456035 17036 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 146456036 146456469 2683 - . gene_id "HERVH_6q24.3b"; transcript_id "HERVH_6q24.3b"; locus "HERVH_6q24.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0604"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR57_6q24.3 ### chr6 rmsk gene 146648958 146650519 . - . gene_id "LTR57_6q24.3"; transcript_id "LTR57_6q24.3"; locus "LTR57_6q24.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0080"; model_cov "1272"; model_pct "23.8"; chr6 rmsk exon 146648958 146649476 6022 - . gene_id "LTR57_6q24.3"; transcript_id "LTR57_6q24.3"; locus "LTR57_6q24.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0080"; repClass "LTR"; repEnd "1592"; repFamily "ERVL"; repLeft "1070"; repStart "-3751"; chr6 rmsk exon 146649791 146650519 6022 - . gene_id "LTR57_6q24.3"; transcript_id "LTR57_6q24.3"; locus "LTR57_6q24.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0080"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "319"; repStart "-4274"; ### ERV316A3_6q24.3b ### chr6 rmsk gene 146731369 146732425 . - . gene_id "ERV316A3_6q24.3b"; transcript_id "ERV316A3_6q24.3b"; locus "ERV316A3_6q24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1327"; model_cov "1083"; model_pct "20.7"; chr6 rmsk exon 146731369 146732425 987 - . gene_id "ERV316A3_6q24.3b"; transcript_id "ERV316A3_6q24.3b"; locus "ERV316A3_6q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1327"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "4021"; repStart "-122"; ### HERV9_6q24.3 ### chr6 rmsk gene 146792861 146794413 . - . gene_id "HERV9_6q24.3"; transcript_id "HERV9_6q24.3"; locus "HERV9_6q24.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0075"; model_cov "1053"; model_pct "12.5"; chr6 rmsk exon 146792861 146793360 3777 - . gene_id "HERV9_6q24.3"; transcript_id "HERV9_6q24.3"; locus "HERV9_6q24.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0075"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 146793361 146794413 8460 - . gene_id "HERV9_6q24.3"; transcript_id "HERV9_6q24.3"; locus "HERV9_6q24.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0075"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7383"; repStart "0"; ### ERVLB4_6q24.3 ### chr6 rmsk gene 147516654 147517354 . - . gene_id "ERVLB4_6q24.3"; transcript_id "ERVLB4_6q24.3"; locus "ERVLB4_6q24.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0757"; model_cov "726"; model_pct "12.7"; chr6 rmsk exon 147516654 147517354 3840 - . gene_id "ERVLB4_6q24.3"; transcript_id "ERVLB4_6q24.3"; locus "ERVLB4_6q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0757"; repClass "LTR"; repEnd "3243"; repFamily "ERVL"; repLeft "2517"; repStart "-2471"; ### HUERSP1_6q24.3a ### chr6 rmsk gene 147534397 147538315 . - . gene_id "HUERSP1_6q24.3a"; transcript_id "HUERSP1_6q24.3a"; locus "HUERSP1_6q24.3a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0082"; model_cov "2717"; model_pct "43.4"; chr6 rmsk exon 147534397 147535075 5267 - . gene_id "HUERSP1_6q24.3a"; transcript_id "HUERSP1_6q24.3a"; locus "HUERSP1_6q24.3a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0082"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 147535076 147535987 28258 - . gene_id "HUERSP1_6q24.3a"; transcript_id "HUERSP1_6q24.3a"; locus "HUERSP1_6q24.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0082"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5322"; repStart "0"; chr6 rmsk exon 147536283 147537470 28258 - . gene_id "HUERSP1_6q24.3a"; transcript_id "HUERSP1_6q24.3a"; locus "HUERSP1_6q24.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0082"; repClass "LTR"; repEnd "5321"; repFamily "ERV1"; repLeft "4137"; repStart "-942"; chr6 rmsk exon 147537777 147538315 28258 - . gene_id "HUERSP1_6q24.3a"; transcript_id "HUERSP1_6q24.3a"; locus "HUERSP1_6q24.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0082"; repClass "LTR"; repEnd "3256"; repFamily "ERV1"; repLeft "2664"; repStart "-3007"; ### HUERSP1_6q24.3b ### chr6 rmsk gene 147538349 147540982 . - . gene_id "HUERSP1_6q24.3b"; transcript_id "HUERSP1_6q24.3b"; locus "HUERSP1_6q24.3b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0083"; model_cov "2849"; model_pct "45.5"; chr6 rmsk exon 147538349 147540933 28258 - . gene_id "HUERSP1_6q24.3b"; transcript_id "HUERSP1_6q24.3b"; locus "HUERSP1_6q24.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0083"; repClass "LTR"; repEnd "3256"; repFamily "ERV1"; repLeft "407"; repStart "-3007"; chr6 rmsk exon 147540961 147540982 13026 - . gene_id "HUERSP1_6q24.3b"; transcript_id "HUERSP1_6q24.3b"; locus "HUERSP1_6q24.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0083"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "312"; repStart "-5951"; ### HUERSP1_6q24.3c ### chr6 rmsk gene 147541250 147543024 . - . gene_id "HUERSP1_6q24.3c"; transcript_id "HUERSP1_6q24.3c"; locus "HUERSP1_6q24.3c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0084"; model_cov "1585"; model_pct "25.3"; chr6 rmsk exon 147541250 147542334 13026 - . gene_id "HUERSP1_6q24.3c"; transcript_id "HUERSP1_6q24.3c"; locus "HUERSP1_6q24.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0084"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "-1273"; repStart "-5951"; chr6 rmsk exon 147542335 147543024 5364 - . gene_id "HUERSP1_6q24.3c"; transcript_id "HUERSP1_6q24.3c"; locus "HUERSP1_6q24.3c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0084"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6q24.3c ### chr6 rmsk gene 147631027 147632682 . - . gene_id "HERVH_6q24.3c"; transcript_id "HERVH_6q24.3c"; locus "HERVH_6q24.3c"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0606"; model_cov "2132"; model_pct "27.6"; chr6 rmsk exon 147631027 147631392 2536 - . gene_id "HERVH_6q24.3c"; transcript_id "HERVH_6q24.3c"; locus "HERVH_6q24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0606"; repClass "LTR"; repEnd "7649"; repFamily "ERV1"; repLeft "7283"; repStart "-64"; chr6 rmsk exon 147631397 147632449 6820 - . gene_id "HERVH_6q24.3c"; transcript_id "HERVH_6q24.3c"; locus "HERVH_6q24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0606"; repClass "LTR"; repEnd "4609"; repFamily "ERV1"; repLeft "3081"; repStart "-3104"; chr6 rmsk exon 147632444 147632682 1445 - . gene_id "HERVH_6q24.3c"; transcript_id "HERVH_6q24.3c"; locus "HERVH_6q24.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0606"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3498"; repStart "-3977"; ### HERVH_6q25.1 ### chr6 rmsk gene 148639772 148645508 . + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0607"; model_cov "4887"; model_pct "63.4"; chr6 rmsk exon 148639772 148640179 2790 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr6 rmsk exon 148640182 148643203 18955 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr6 rmsk exon 148643198 148643345 878 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 148643336 148643838 3211 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 148643841 148644503 4111 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 148644505 148644721 1297 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr6 rmsk exon 148644722 148645079 2095 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "7694"; repFamily "ERV1"; repLeft "-19"; repStart "7324"; chr6 rmsk exon 148645099 148645508 2903 + . gene_id "HERVH_6q25.1"; transcript_id "HERVH_6q25.1"; locus "HERVH_6q25.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0607"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_6q25.1a ### chr6 rmsk gene 148715406 148716461 . + . gene_id "ERV316A3_6q25.1a"; transcript_id "ERV316A3_6q25.1a"; locus "ERV316A3_6q25.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1328"; model_cov "669"; model_pct "12.8"; chr6 rmsk exon 148715406 148716084 2056 + . gene_id "ERV316A3_6q25.1a"; transcript_id "ERV316A3_6q25.1a"; locus "ERV316A3_6q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1328"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4557"; chr6 rmsk exon 148716089 148716461 1425 + . gene_id "ERV316A3_6q25.1a"; transcript_id "ERV316A3_6q25.1a"; locus "ERV316A3_6q25.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1328"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERV316A3_6q25.1b ### chr6 rmsk gene 149150909 149153287 . + . gene_id "ERV316A3_6q25.1b"; transcript_id "ERV316A3_6q25.1b"; locus "ERV316A3_6q25.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1329"; model_cov "2003"; model_pct "38.3"; chr6 rmsk exon 149150909 149152878 4536 + . gene_id "ERV316A3_6q25.1b"; transcript_id "ERV316A3_6q25.1b"; locus "ERV316A3_6q25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1329"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3223"; chr6 rmsk exon 149152882 149153287 1310 + . gene_id "ERV316A3_6q25.1b"; transcript_id "ERV316A3_6q25.1b"; locus "ERV316A3_6q25.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1329"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-26"; repStart "4"; ### ERV316A3_6q25.1c ### chr6 rmsk gene 149425042 149429091 . - . gene_id "ERV316A3_6q25.1c"; transcript_id "ERV316A3_6q25.1c"; locus "ERV316A3_6q25.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1330"; model_cov "3601"; model_pct "68.9"; chr6 rmsk exon 149425042 149425216 309 - . gene_id "ERV316A3_6q25.1c"; transcript_id "ERV316A3_6q25.1c"; locus "ERV316A3_6q25.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1330"; repClass "LTR"; repEnd "308"; repFamily "ERVL"; repLeft "115"; repStart "-154"; chr6 rmsk exon 149425423 149428295 6417 - . gene_id "ERV316A3_6q25.1c"; transcript_id "ERV316A3_6q25.1c"; locus "ERV316A3_6q25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1330"; repClass "LTR"; repEnd "4039"; repFamily "ERVL"; repLeft "1132"; repStart "-1187"; chr6 rmsk exon 149428445 149429091 1631 - . gene_id "ERV316A3_6q25.1c"; transcript_id "ERV316A3_6q25.1c"; locus "ERV316A3_6q25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1330"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "691"; repStart "-3841"; ### HUERSP3_6q25.1 ### chr6 rmsk gene 149548231 149551114 . - . gene_id "HUERSP3_6q25.1"; transcript_id "HUERSP3_6q25.1"; locus "HUERSP3_6q25.1"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0085"; model_cov "2438"; model_pct "27.3"; chr6 rmsk exon 149548231 149548617 2267 - . gene_id "HUERSP3_6q25.1"; transcript_id "HUERSP3_6q25.1"; locus "HUERSP3_6q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0085"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "6797"; repStart "-1734"; chr6 rmsk exon 149548611 149550109 10607 - . gene_id "HUERSP3_6q25.1"; transcript_id "HUERSP3_6q25.1"; locus "HUERSP3_6q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0085"; repClass "LTR"; repEnd "6625"; repFamily "ERV1"; repLeft "5122"; repStart "-2294"; chr6 rmsk exon 149550409 149550576 10607 - . gene_id "HUERSP3_6q25.1"; transcript_id "HUERSP3_6q25.1"; locus "HUERSP3_6q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0085"; repClass "LTR"; repEnd "5121"; repFamily "ERV1"; repLeft "4954"; repStart "-3798"; chr6 rmsk exon 149550735 149551114 2544 - . gene_id "HUERSP3_6q25.1"; transcript_id "HUERSP3_6q25.1"; locus "HUERSP3_6q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0085"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "4562"; repStart "-3977"; ### ERV316A3_6q25.1d ### chr6 rmsk gene 149920275 149922207 . + . gene_id "ERV316A3_6q25.1d"; transcript_id "ERV316A3_6q25.1d"; locus "ERV316A3_6q25.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1331"; model_cov "1049"; model_pct "20.1"; chr6 rmsk exon 149920275 149921081 792 + . gene_id "ERV316A3_6q25.1d"; transcript_id "ERV316A3_6q25.1d"; locus "ERV316A3_6q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1331"; repClass "LTR"; repEnd "2113"; repFamily "ERVL"; repLeft "-3113"; repStart "1218"; chr6 rmsk exon 149922059 149922207 300 + . gene_id "ERV316A3_6q25.1d"; transcript_id "ERV316A3_6q25.1d"; locus "ERV316A3_6q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1331"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-618"; repStart "4454"; ### ERV316A3_6q25.1e ### chr6 rmsk gene 149943427 149944839 . - . gene_id "ERV316A3_6q25.1e"; transcript_id "ERV316A3_6q25.1e"; locus "ERV316A3_6q25.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1332"; model_cov "923"; model_pct "17.7"; chr6 rmsk exon 149943427 149943605 274 - . gene_id "ERV316A3_6q25.1e"; transcript_id "ERV316A3_6q25.1e"; locus "ERV316A3_6q25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1332"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "3202"; repStart "-1842"; chr6 rmsk exon 149944047 149944232 387 - . gene_id "ERV316A3_6q25.1e"; transcript_id "ERV316A3_6q25.1e"; locus "ERV316A3_6q25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1332"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "1918"; repStart "-3115"; chr6 rmsk exon 149944295 149944839 611 - . gene_id "ERV316A3_6q25.1e"; transcript_id "ERV316A3_6q25.1e"; locus "ERV316A3_6q25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1332"; repClass "LTR"; repEnd "1536"; repFamily "ERVL"; repLeft "988"; repStart "-3690"; ### ERV316A3_6q25.1f ### chr6 rmsk gene 149966830 149968150 . - . gene_id "ERV316A3_6q25.1f"; transcript_id "ERV316A3_6q25.1f"; locus "ERV316A3_6q25.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1333"; model_cov "1067"; model_pct "20.4"; chr6 rmsk exon 149966830 149966969 367 - . gene_id "ERV316A3_6q25.1f"; transcript_id "ERV316A3_6q25.1f"; locus "ERV316A3_6q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1333"; repClass "LTR"; repEnd "3087"; repFamily "ERVL"; repLeft "2948"; repStart "-2139"; chr6 rmsk exon 149967116 149967525 624 - . gene_id "ERV316A3_6q25.1f"; transcript_id "ERV316A3_6q25.1f"; locus "ERV316A3_6q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1333"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "1579"; repStart "-3247"; chr6 rmsk exon 149967625 149968150 600 - . gene_id "ERV316A3_6q25.1f"; transcript_id "ERV316A3_6q25.1f"; locus "ERV316A3_6q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1333"; repClass "LTR"; repEnd "1511"; repFamily "ERVL"; repLeft "983"; repStart "-3715"; ### ERV316A3_6q25.1g ### chr6 rmsk gene 150002113 150003708 . + . gene_id "ERV316A3_6q25.1g"; transcript_id "ERV316A3_6q25.1g"; locus "ERV316A3_6q25.1g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1335"; model_cov "1470"; model_pct "28.1"; chr6 rmsk exon 150002113 150002649 655 + . gene_id "ERV316A3_6q25.1g"; transcript_id "ERV316A3_6q25.1g"; locus "ERV316A3_6q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1335"; repClass "LTR"; repEnd "1511"; repFamily "ERVL"; repLeft "-3715"; repStart "971"; chr6 rmsk exon 150002749 150003153 717 + . gene_id "ERV316A3_6q25.1g"; transcript_id "ERV316A3_6q25.1g"; locus "ERV316A3_6q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1335"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "-3247"; repStart "1579"; chr6 rmsk exon 150003300 150003708 409 + . gene_id "ERV316A3_6q25.1g"; transcript_id "ERV316A3_6q25.1g"; locus "ERV316A3_6q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1335"; repClass "LTR"; repEnd "3037"; repFamily "ERVL"; repLeft "-2189"; repStart "2507"; ### ERV316A3_6q25.1h ### chr6 rmsk gene 150067168 150068131 . + . gene_id "ERV316A3_6q25.1h"; transcript_id "ERV316A3_6q25.1h"; locus "ERV316A3_6q25.1h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1339"; model_cov "821"; model_pct "15.7"; chr6 rmsk exon 150067168 150067577 708 + . gene_id "ERV316A3_6q25.1h"; transcript_id "ERV316A3_6q25.1h"; locus "ERV316A3_6q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1339"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "-3247"; repStart "1579"; chr6 rmsk exon 150067725 150068131 335 + . gene_id "ERV316A3_6q25.1h"; transcript_id "ERV316A3_6q25.1h"; locus "ERV316A3_6q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1339"; repClass "LTR"; repEnd "3037"; repFamily "ERVL"; repLeft "-2189"; repStart "2616"; ### HERVH48_6q25.1 ### chr6 rmsk gene 150098242 150101075 . + . gene_id "HERVH48_6q25.1"; transcript_id "HERVH48_6q25.1"; locus "HERVH48_6q25.1"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0024"; model_cov "2083"; model_pct "31.3"; chr6 rmsk exon 150098242 150098625 2601 + . gene_id "HERVH48_6q25.1"; transcript_id "HERVH48_6q25.1"; locus "HERVH48_6q25.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0024"; repClass "LTR"; repEnd "400"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr6 rmsk exon 150098626 150100683 15069 + . gene_id "HERVH48_6q25.1"; transcript_id "HERVH48_6q25.1"; locus "HERVH48_6q25.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0024"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "4571"; chr6 rmsk exon 150100684 150101075 2855 + . gene_id "HERVH48_6q25.1"; transcript_id "HERVH48_6q25.1"; locus "HERVH48_6q25.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0024"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_6q25.1 ### chr6 rmsk gene 150328053 150334582 . - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0758"; model_cov "5073"; model_pct "88.8"; chr6 rmsk exon 150328053 150328478 1940 - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0758"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 150328479 150331953 14785 - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0758"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "2195"; repStart "0"; chr6 rmsk exon 150332240 150332450 14785 - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0758"; repClass "LTR"; repEnd "2194"; repFamily "ERVL"; repLeft "1978"; repStart "-3520"; chr6 rmsk exon 150332443 150332710 1609 - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0758"; repClass "LTR"; repEnd "1832"; repFamily "ERVL"; repLeft "1567"; repStart "-3882"; chr6 rmsk exon 150333485 150334582 5265 - . gene_id "ERVLB4_6q25.1"; transcript_id "ERVLB4_6q25.1"; locus "ERVLB4_6q25.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0758"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "513"; repStart "-4128"; ### ERV316A3_6q25.1i ### chr6 rmsk gene 150468888 150471458 . - . gene_id "ERV316A3_6q25.1i"; transcript_id "ERV316A3_6q25.1i"; locus "ERV316A3_6q25.1i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1340"; model_cov "2930"; model_pct "56.1"; chr6 rmsk exon 150468888 150469622 930 - . gene_id "ERV316A3_6q25.1i"; transcript_id "ERV316A3_6q25.1i"; locus "ERV316A3_6q25.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1340"; repClass "LTR"; repEnd "4605"; repFamily "ERVL"; repLeft "3740"; repStart "-621"; chr6 rmsk exon 150469677 150471458 3688 - . gene_id "ERV316A3_6q25.1i"; transcript_id "ERV316A3_6q25.1i"; locus "ERV316A3_6q25.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1340"; repClass "LTR"; repEnd "3824"; repFamily "ERVL"; repLeft "1759"; repStart "-1402"; ### HERV9_6q25.1 ### chr6 rmsk gene 150849127 150856692 . + . gene_id "HERV9_6q25.1"; transcript_id "HERV9_6q25.1"; locus "HERV9_6q25.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0076"; model_cov "6061"; model_pct "71.8"; chr6 rmsk exon 150849127 150849867 4588 + . gene_id "HERV9_6q25.1"; transcript_id "HERV9_6q25.1"; locus "HERV9_6q25.1"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0076"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 150849884 150850652 6144 + . gene_id "HERV9_6q25.1"; transcript_id "HERV9_6q25.1"; locus "HERV9_6q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0076"; repClass "LTR"; repEnd "827"; repFamily "ERV1"; repLeft "-7609"; repStart "43"; chr6 rmsk exon 150850651 150855902 45261 + . gene_id "HERV9_6q25.1"; transcript_id "HERV9_6q25.1"; locus "HERV9_6q25.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0076"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "3159"; chr6 rmsk exon 150855903 150856692 5014 + . gene_id "HERV9_6q25.1"; transcript_id "HERV9_6q25.1"; locus "HERV9_6q25.1"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0076"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_6q25.1 ### chr6 rmsk gene 150859613 150862438 . + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0054"; model_cov "1757"; model_pct "23.3"; chr6 rmsk exon 150859613 150861371 13136 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5684"; chr6 rmsk exon 150861466 150862438 6300 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_6q25.1 ### chr6 rmsk gene 152037895 152044933 . - . gene_id "HERVL_6q25.1"; transcript_id "HERVL_6q25.1"; locus "HERVL_6q25.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0654"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 152037895 152038438 1739 - . gene_id "HERVL_6q25.1"; transcript_id "HERVL_6q25.1"; locus "HERVL_6q25.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0654"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr6 rmsk exon 152038439 152038636 40189 - . gene_id "HERVL_6q25.1"; transcript_id "HERVL_6q25.1"; locus "HERVL_6q25.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0654"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5461"; repStart "0"; chr6 rmsk exon 152038917 152044388 40189 - . gene_id "HERVL_6q25.1"; transcript_id "HERVL_6q25.1"; locus "HERVL_6q25.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0654"; repClass "LTR"; repEnd "5460"; repFamily "ERVL"; repLeft "1"; repStart "-194"; chr6 rmsk exon 152044389 152044933 2005 - . gene_id "HERVL_6q25.1"; transcript_id "HERVL_6q25.1"; locus "HERVL_6q25.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0654"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-99"; repStart "0"; ### HERVH_6q25.2a ### chr6 rmsk gene 152490339 152497169 . + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0608"; model_cov "5498"; model_pct "71.3"; chr6 rmsk exon 152490339 152490744 1858 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 152490745 152491147 1603 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr6 rmsk exon 152491151 152491325 439 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "347"; chr6 rmsk exon 152491384 152495382 21904 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "4842"; repFamily "ERV1"; repLeft "-2871"; repStart "800"; chr6 rmsk exon 152495358 152495439 1830 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "6727"; repFamily "ERV1"; repLeft "-986"; repStart "6646"; chr6 rmsk exon 152495969 152496185 1830 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6728"; chr6 rmsk exon 152496172 152496234 303 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7655"; chr6 rmsk exon 152496236 152496751 3331 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr6 rmsk exon 152496752 152497169 1909 + . gene_id "HERVH_6q25.2a"; transcript_id "HERVH_6q25.2a"; locus "HERVH_6q25.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0608"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_6q25.2a ### chr6 rmsk gene 152656318 152659148 . - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1752"; model_cov "1562"; model_pct "27.6"; chr6 rmsk exon 152656318 152656424 969 - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1752"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "4390"; repStart "-1169"; chr6 rmsk exon 152656779 152657223 969 - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1752"; repClass "LTR"; repEnd "4389"; repFamily "ERVL"; repLeft "3897"; repStart "-1278"; chr6 rmsk exon 152657359 152657606 339 - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1752"; repClass "LTR"; repEnd "4164"; repFamily "ERVL"; repLeft "3915"; repStart "-1503"; chr6 rmsk exon 152657704 152657885 394 - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1752"; repClass "LTR"; repEnd "3496"; repFamily "ERVL"; repLeft "3293"; repStart "-2171"; chr6 rmsk exon 152658721 152659148 832 - . gene_id "ERVLE_6q25.2a"; transcript_id "ERVLE_6q25.2a"; locus "ERVLE_6q25.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1752"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "2780"; repStart "-2377"; ### ERVLE_6q25.2b ### chr6 rmsk gene 152662826 152663768 . + . gene_id "ERVLE_6q25.2b"; transcript_id "ERVLE_6q25.2b"; locus "ERVLE_6q25.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1753"; model_cov "961"; model_pct "17.0"; chr6 rmsk exon 152662826 152662924 389 + . gene_id "ERVLE_6q25.2b"; transcript_id "ERVLE_6q25.2b"; locus "ERVLE_6q25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1753"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "-4516"; repStart "1050"; chr6 rmsk exon 152662925 152663285 678 + . gene_id "ERVLE_6q25.2b"; transcript_id "ERVLE_6q25.2b"; locus "ERVLE_6q25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1753"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "-4038"; repStart "1258"; chr6 rmsk exon 152663317 152663768 1076 + . gene_id "ERVLE_6q25.2b"; transcript_id "ERVLE_6q25.2b"; locus "ERVLE_6q25.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1753"; repClass "LTR"; repEnd "2202"; repFamily "ERVL"; repLeft "-3465"; repStart "1713"; ### ERVLE_6q25.2c ### chr6 rmsk gene 152904846 152905555 . - . gene_id "ERVLE_6q25.2c"; transcript_id "ERVLE_6q25.2c"; locus "ERVLE_6q25.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1754"; model_cov "751"; model_pct "13.3"; chr6 rmsk exon 152904846 152905555 2607 - . gene_id "ERVLE_6q25.2c"; transcript_id "ERVLE_6q25.2c"; locus "ERVLE_6q25.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1754"; repClass "LTR"; repEnd "767"; repFamily "ERVL"; repLeft "16"; repStart "-4900"; ### HERVL18_6q25.2 ### chr6 rmsk gene 153149994 153152963 . + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0080"; model_cov "1981"; model_pct "32.8"; chr6 rmsk exon 153149994 153150305 1705 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "292"; chr6 rmsk exon 153150327 153150597 1539 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "291"; repFamily "ERVL"; repLeft "-5756"; repStart "19"; chr6 rmsk exon 153150598 153150770 787 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "492"; chr6 rmsk exon 153150799 153151160 1134 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1388"; chr6 rmsk exon 153151160 153151386 646 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr6 rmsk exon 153151384 153151580 974 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "2959"; repFamily "ERVL"; repLeft "-3088"; repStart "2718"; chr6 rmsk exon 153151630 153152157 3221 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2952"; chr6 rmsk exon 153152359 153152963 4183 + . gene_id "HERVL18_6q25.2"; transcript_id "HERVL18_6q25.2"; locus "HERVL18_6q25.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0080"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6q25.2d ### chr6 rmsk gene 153157711 153160692 . - . gene_id "ERVLE_6q25.2d"; transcript_id "ERVLE_6q25.2d"; locus "ERVLE_6q25.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1755"; model_cov "1553"; model_pct "27.4"; chr6 rmsk exon 153157711 153158383 1116 - . gene_id "ERVLE_6q25.2d"; transcript_id "ERVLE_6q25.2d"; locus "ERVLE_6q25.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1755"; repClass "LTR"; repEnd "5622"; repFamily "ERVL"; repLeft "4922"; repStart "-45"; chr6 rmsk exon 153158401 153158635 850 - . gene_id "ERVLE_6q25.2d"; transcript_id "ERVLE_6q25.2d"; locus "ERVLE_6q25.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1755"; repClass "LTR"; repEnd "3707"; repFamily "ERVL"; repLeft "3477"; repStart "-1960"; chr6 rmsk exon 153159011 153159255 850 - . gene_id "ERVLE_6q25.2d"; transcript_id "ERVLE_6q25.2d"; locus "ERVLE_6q25.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1755"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "3232"; repStart "-2191"; chr6 rmsk exon 153160322 153160692 1018 - . gene_id "ERVLE_6q25.2d"; transcript_id "ERVLE_6q25.2d"; locus "ERVLE_6q25.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1755"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "2643"; repStart "-2645"; ### ERVLE_6q25.2e ### chr6 rmsk gene 153197878 153198915 . + . gene_id "ERVLE_6q25.2e"; transcript_id "ERVLE_6q25.2e"; locus "ERVLE_6q25.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1756"; model_cov "750"; model_pct "13.2"; chr6 rmsk exon 153197878 153198340 1901 + . gene_id "ERVLE_6q25.2e"; transcript_id "ERVLE_6q25.2e"; locus "ERVLE_6q25.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1756"; repClass "LTR"; repEnd "4415"; repFamily "ERVL"; repLeft "-1252"; repStart "3958"; chr6 rmsk exon 153198635 153198915 1901 + . gene_id "ERVLE_6q25.2e"; transcript_id "ERVLE_6q25.2e"; locus "ERVLE_6q25.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1756"; repClass "LTR"; repEnd "4709"; repFamily "ERVL"; repLeft "-958"; repStart "4416"; ### ERVLE_6q25.2f ### chr6 rmsk gene 153288965 153290913 . - . gene_id "ERVLE_6q25.2f"; transcript_id "ERVLE_6q25.2f"; locus "ERVLE_6q25.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1757"; model_cov "1970"; model_pct "34.8"; chr6 rmsk exon 153288965 153289205 785 - . gene_id "ERVLE_6q25.2f"; transcript_id "ERVLE_6q25.2f"; locus "ERVLE_6q25.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1757"; repClass "LTR"; repEnd "4670"; repFamily "ERVL"; repLeft "4424"; repStart "-997"; chr6 rmsk exon 153289208 153290913 6564 - . gene_id "ERVLE_6q25.2f"; transcript_id "ERVLE_6q25.2f"; locus "ERVLE_6q25.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1757"; repClass "LTR"; repEnd "1727"; repFamily "ERVL"; repLeft "3"; repStart "-3940"; ### ERV316A3_6q25.2a ### chr6 rmsk gene 153319345 153321133 . + . gene_id "ERV316A3_6q25.2a"; transcript_id "ERV316A3_6q25.2a"; locus "ERV316A3_6q25.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1341"; model_cov "828"; model_pct "15.8"; chr6 rmsk exon 153319345 153320185 1321 + . gene_id "ERV316A3_6q25.2a"; transcript_id "ERV316A3_6q25.2a"; locus "ERV316A3_6q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1341"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-1842"; repStart "2556"; chr6 rmsk exon 153320755 153321133 592 + . gene_id "ERV316A3_6q25.2a"; transcript_id "ERV316A3_6q25.2a"; locus "ERV316A3_6q25.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1341"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-39"; repStart "3"; ### MER61_6q25.2 ### chr6 rmsk gene 153352801 153357875 . + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0197"; model_cov "4171"; model_pct "80.0"; chr6 rmsk exon 153352801 153353142 2124 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0197"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr6 rmsk exon 153353143 153353777 2292 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0197"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr6 rmsk exon 153353771 153353817 286 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0197"; repClass "LTR"; repEnd "1366"; repFamily "ERV1"; repLeft "-3851"; repStart "1320"; chr6 rmsk exon 153353894 153354618 4415 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0197"; repClass "LTR"; repEnd "2186"; repFamily "ERV1"; repLeft "-3031"; repStart "1462"; chr6 rmsk exon 153354613 153356809 16937 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0197"; repClass "LTR"; repEnd "4779"; repFamily "ERV1"; repLeft "-438"; repStart "2591"; chr6 rmsk exon 153357118 153357541 16937 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0197"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4780"; chr6 rmsk exon 153357542 153357875 1607 + . gene_id "MER61_6q25.2"; transcript_id "MER61_6q25.2"; locus "MER61_6q25.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0197"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_6q25.2b ### chr6 rmsk gene 153378968 153379939 . + . gene_id "ERV316A3_6q25.2b"; transcript_id "ERV316A3_6q25.2b"; locus "ERV316A3_6q25.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1342"; model_cov "1003"; model_pct "19.2"; chr6 rmsk exon 153378968 153379939 2359 + . gene_id "ERV316A3_6q25.2b"; transcript_id "ERV316A3_6q25.2b"; locus "ERV316A3_6q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1342"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "-3625"; repStart "598"; ### MER41_6q25.2a ### chr6 rmsk gene 153410991 153413768 . - . gene_id "MER41_6q25.2a"; transcript_id "MER41_6q25.2a"; locus "MER41_6q25.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0242"; model_cov "3476"; model_pct "58.5"; chr6 rmsk exon 153410991 153411545 4062 - . gene_id "MER41_6q25.2a"; transcript_id "MER41_6q25.2a"; locus "MER41_6q25.2a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0242"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 153411728 153413768 8659 - . gene_id "MER41_6q25.2a"; transcript_id "MER41_6q25.2a"; locus "MER41_6q25.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0242"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "1358"; repStart "-1112"; ### MER41_6q25.2b ### chr6 rmsk gene 153413821 153415988 . - . gene_id "MER41_6q25.2b"; transcript_id "MER41_6q25.2b"; locus "MER41_6q25.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0243"; model_cov "2615"; model_pct "44.0"; chr6 rmsk exon 153413821 153415353 8659 - . gene_id "MER41_6q25.2b"; transcript_id "MER41_6q25.2b"; locus "MER41_6q25.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0243"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "2219"; repStart "-1112"; chr6 rmsk exon 153415440 153415988 3913 - . gene_id "MER41_6q25.2b"; transcript_id "MER41_6q25.2b"; locus "MER41_6q25.2b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0243"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_6q25.2a ### chr6 rmsk gene 153442003 153446587 . - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0349"; model_cov "4305"; model_pct "65.2"; chr6 rmsk exon 153442003 153442425 3029 - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0349"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "55"; repStart "0"; chr6 rmsk exon 153442459 153442517 8953 - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0349"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6547"; repStart "-2"; chr6 rmsk exon 153442930 153443916 15710 - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0349"; repClass "LTR"; repEnd "6546"; repFamily "ERV1"; repLeft "5527"; repStart "-52"; chr6 rmsk exon 153444224 153445193 15710 - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0349"; repClass "LTR"; repEnd "5526"; repFamily "ERV1"; repLeft "4532"; repStart "-1072"; chr6 rmsk exon 153445451 153446587 15710 - . gene_id "MER4_6q25.2a"; transcript_id "MER4_6q25.2a"; locus "MER4_6q25.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0349"; repClass "LTR"; repEnd "4531"; repFamily "ERV1"; repLeft "2288"; repStart "-2067"; ### MER4_6q25.2b ### chr6 rmsk gene 153446808 153447908 . - . gene_id "MER4_6q25.2b"; transcript_id "MER4_6q25.2b"; locus "MER4_6q25.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0350"; model_cov "2115"; model_pct "32.1"; chr6 rmsk exon 153446808 153447464 15710 - . gene_id "MER4_6q25.2b"; transcript_id "MER4_6q25.2b"; locus "MER4_6q25.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0350"; repClass "LTR"; repEnd "4531"; repFamily "ERV1"; repLeft "3231"; repStart "-2067"; chr6 rmsk exon 153447462 153447860 1482 - . gene_id "MER4_6q25.2b"; transcript_id "MER4_6q25.2b"; locus "MER4_6q25.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0350"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "503"; repStart "-5330"; chr6 rmsk exon 153447859 153447908 309 - . gene_id "MER4_6q25.2b"; transcript_id "MER4_6q25.2b"; locus "MER4_6q25.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0350"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "836"; repStart "-5712"; ### PRIMA4_6q25.2 ### chr6 rmsk gene 153448018 153448999 . - . gene_id "PRIMA4_6q25.2"; transcript_id "PRIMA4_6q25.2"; locus "PRIMA4_6q25.2"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0099"; model_cov "972"; model_pct "11.8"; chr6 rmsk exon 153448018 153448999 2939 - . gene_id "PRIMA4_6q25.2"; transcript_id "PRIMA4_6q25.2"; locus "PRIMA4_6q25.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0099"; repClass "LTR"; repEnd "973"; repFamily "ERV1"; repLeft "1"; repStart "-7297"; ### ERVLE_6q25.2g ### chr6 rmsk gene 153536088 153537664 . + . gene_id "ERVLE_6q25.2g"; transcript_id "ERVLE_6q25.2g"; locus "ERVLE_6q25.2g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1758"; model_cov "1007"; model_pct "17.8"; chr6 rmsk exon 153536088 153536664 667 + . gene_id "ERVLE_6q25.2g"; transcript_id "ERVLE_6q25.2g"; locus "ERVLE_6q25.2g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1758"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "-4"; repStart "37"; chr6 rmsk exon 153536672 153537524 2688 + . gene_id "ERVLE_6q25.2g"; transcript_id "ERVLE_6q25.2g"; locus "ERVLE_6q25.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1758"; repClass "LTR"; repEnd "866"; repFamily "ERVL"; repLeft "-4801"; repStart "11"; chr6 rmsk exon 153537521 153537664 463 + . gene_id "ERVLE_6q25.2g"; transcript_id "ERVLE_6q25.2g"; locus "ERVLE_6q25.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1758"; repClass "LTR"; repEnd "4482"; repFamily "ERVL"; repLeft "-1185"; repStart "4330"; ### ERV316A3_6q25.2c ### chr6 rmsk gene 153603339 153605575 . - . gene_id "ERV316A3_6q25.2c"; transcript_id "ERV316A3_6q25.2c"; locus "ERV316A3_6q25.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1345"; model_cov "1478"; model_pct "28.3"; chr6 rmsk exon 153603339 153603709 831 - . gene_id "ERV316A3_6q25.2c"; transcript_id "ERV316A3_6q25.2c"; locus "ERV316A3_6q25.2c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1345"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "12"; repStart "0"; chr6 rmsk exon 153604091 153605188 2132 - . gene_id "ERV316A3_6q25.2c"; transcript_id "ERV316A3_6q25.2c"; locus "ERV316A3_6q25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1345"; repClass "LTR"; repEnd "5196"; repFamily "ERVL"; repLeft "4118"; repStart "-30"; chr6 rmsk exon 153605198 153605575 442 - . gene_id "ERV316A3_6q25.2c"; transcript_id "ERV316A3_6q25.2c"; locus "ERV316A3_6q25.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1345"; repClass "LTR"; repEnd "2824"; repFamily "ERVL"; repLeft "2424"; repStart "-2402"; ### ERV316A3_6q25.2d ### chr6 rmsk gene 153844141 153847738 . - . gene_id "ERV316A3_6q25.2d"; transcript_id "ERV316A3_6q25.2d"; locus "ERV316A3_6q25.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1346"; model_cov "3168"; model_pct "60.6"; chr6 rmsk exon 153844141 153844510 626 - . gene_id "ERV316A3_6q25.2d"; transcript_id "ERV316A3_6q25.2d"; locus "ERV316A3_6q25.2d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1346"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "7"; repStart "-50"; chr6 rmsk exon 153844565 153846105 2609 - . gene_id "ERV316A3_6q25.2d"; transcript_id "ERV316A3_6q25.2d"; locus "ERV316A3_6q25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1346"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "3647"; repStart "-55"; chr6 rmsk exon 153846135 153847471 1427 - . gene_id "ERV316A3_6q25.2d"; transcript_id "ERV316A3_6q25.2d"; locus "ERV316A3_6q25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1346"; repClass "LTR"; repEnd "2736"; repFamily "ERVL"; repLeft "1277"; repStart "-2490"; chr6 rmsk exon 153847559 153847738 392 - . gene_id "ERV316A3_6q25.2d"; transcript_id "ERV316A3_6q25.2d"; locus "ERV316A3_6q25.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1346"; repClass "LTR"; repEnd "889"; repFamily "ERVL"; repLeft "704"; repStart "-4337"; ### MER4_6q25.2c ### chr6 rmsk gene 153884937 153887965 . - . gene_id "MER4_6q25.2c"; transcript_id "MER4_6q25.2c"; locus "MER4_6q25.2c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0351"; model_cov "2477"; model_pct "37.5"; chr6 rmsk exon 153884937 153885384 3398 - . gene_id "MER4_6q25.2c"; transcript_id "MER4_6q25.2c"; locus "MER4_6q25.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0351"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 153885386 153887771 13997 - . gene_id "MER4_6q25.2c"; transcript_id "MER4_6q25.2c"; locus "MER4_6q25.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0351"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4119"; repStart "-2"; chr6 rmsk exon 153887772 153887965 1185 - . gene_id "MER4_6q25.2c"; transcript_id "MER4_6q25.2c"; locus "MER4_6q25.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0351"; repClass "LTR"; repEnd "186"; repFamily "ERV1"; repLeft "1"; repStart "-286"; ### HERVL_6q25.2 ### chr6 rmsk gene 153910445 153912970 . - . gene_id "HERVL_6q25.2"; transcript_id "HERVL_6q25.2"; locus "HERVL_6q25.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0655"; model_cov "2118"; model_pct "37.5"; chr6 rmsk exon 153910445 153910824 2646 - . gene_id "HERVL_6q25.2"; transcript_id "HERVL_6q25.2"; locus "HERVL_6q25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0655"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "3"; repStart "-57"; chr6 rmsk exon 153910827 153911870 7513 - . gene_id "HERVL_6q25.2"; transcript_id "HERVL_6q25.2"; locus "HERVL_6q25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0655"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4598"; repStart "0"; chr6 rmsk exon 153911869 153912898 7700 - . gene_id "HERVL_6q25.2"; transcript_id "HERVL_6q25.2"; locus "HERVL_6q25.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0655"; repClass "LTR"; repEnd "3665"; repFamily "ERVL"; repLeft "2603"; repStart "-1989"; chr6 rmsk exon 153912903 153912970 483 - . gene_id "HERVL_6q25.2"; transcript_id "HERVL_6q25.2"; locus "HERVL_6q25.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0655"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "1"; repStart "-376"; ### HERVH_6q25.2b ### chr6 rmsk gene 153922730 153927203 . + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0609"; model_cov "3987"; model_pct "51.7"; chr6 rmsk exon 153922730 153922817 692 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "89"; repFamily "ERV1"; repLeft "-383"; repStart "2"; chr6 rmsk exon 153922818 153924888 14310 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "918"; chr6 rmsk exon 153924883 153925030 849 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr6 rmsk exon 153925021 153925525 3100 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr6 rmsk exon 153925528 153926180 3902 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr6 rmsk exon 153926182 153926396 1270 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "-1896"; repStart "5600"; chr6 rmsk exon 153926399 153926775 2308 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr6 rmsk exon 153926776 153927203 3375 + . gene_id "HERVH_6q25.2b"; transcript_id "HERVH_6q25.2b"; locus "HERVH_6q25.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0609"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### PABLA_6q25.2 ### chr6 rmsk gene 154104035 154108759 . - . gene_id "PABLA_6q25.2"; transcript_id "PABLA_6q25.2"; locus "PABLA_6q25.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0062"; model_cov "5600"; model_pct "100.0"; chr6 rmsk exon 154104035 154107193 13626 - . gene_id "PABLA_6q25.2"; transcript_id "PABLA_6q25.2"; locus "PABLA_6q25.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0062"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "1255"; repStart "-4"; chr6 rmsk exon 154107190 154107244 336 - . gene_id "PABLA_6q25.2"; transcript_id "PABLA_6q25.2"; locus "PABLA_6q25.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0062"; repClass "LTR"; repEnd "1289"; repFamily "ERV1"; repLeft "1232"; repStart "-3726"; chr6 rmsk exon 154107241 154107953 4246 - . gene_id "PABLA_6q25.2"; transcript_id "PABLA_6q25.2"; locus "PABLA_6q25.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0062"; repClass "LTR"; repEnd "1083"; repFamily "ERV1"; repLeft "187"; repStart "-3932"; chr6 rmsk exon 154107991 154108759 4246 - . gene_id "PABLA_6q25.2"; transcript_id "PABLA_6q25.2"; locus "PABLA_6q25.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0062"; repClass "LTR"; repEnd "186"; repFamily "ERV1"; repLeft "-705"; repStart "-4829"; ### HERVL40_6q25.2a ### chr6 rmsk gene 154112245 154115125 . - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0194"; model_cov "1848"; model_pct "33.4"; chr6 rmsk exon 154112245 154112536 636 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "151"; repStart "-2"; chr6 rmsk exon 154112739 154112990 850 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "5505"; repFamily "ERVL"; repLeft "5247"; repStart "-25"; chr6 rmsk exon 154113095 154113167 323 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "5252"; repFamily "ERVL"; repLeft "5175"; repStart "-278"; chr6 rmsk exon 154113361 154113921 1459 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "4588"; repStart "-356"; chr6 rmsk exon 154113944 154114008 355 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "2660"; repFamily "ERVL"; repLeft "2597"; repStart "-2870"; chr6 rmsk exon 154114084 154114268 308 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "2153"; repStart "-3195"; chr6 rmsk exon 154114457 154115125 775 - . gene_id "HERVL40_6q25.2a"; transcript_id "HERVL40_6q25.2a"; locus "HERVL40_6q25.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0194"; repClass "LTR"; repEnd "2113"; repFamily "ERVL"; repLeft "1431"; repStart "-3417"; ### ERV316A3_6q25.2e ### chr6 rmsk gene 154146796 154148845 . - . gene_id "ERV316A3_6q25.2e"; transcript_id "ERV316A3_6q25.2e"; locus "ERV316A3_6q25.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1347"; model_cov "1666"; model_pct "31.9"; chr6 rmsk exon 154146796 154147246 878 - . gene_id "ERV316A3_6q25.2e"; transcript_id "ERV316A3_6q25.2e"; locus "ERV316A3_6q25.2e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1347"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "6"; repStart "0"; chr6 rmsk exon 154147325 154148845 3027 - . gene_id "ERV316A3_6q25.2e"; transcript_id "ERV316A3_6q25.2e"; locus "ERV316A3_6q25.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1347"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "3469"; repStart "-91"; ### ERVLB4_6q25.2 ### chr6 rmsk gene 154560951 154568180 . + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0761"; model_cov "5813"; model_pct "100.0"; chr6 rmsk exon 154560951 154561492 2500 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr6 rmsk exon 154561493 154563266 15815 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "1827"; repFamily "ERVL"; repLeft "-3887"; repStart "1"; chr6 rmsk exon 154563569 154564451 15815 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "2710"; repFamily "ERVL"; repLeft "-3004"; repStart "1828"; chr6 rmsk exon 154564815 154565576 4041 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "-2287"; repStart "2706"; chr6 rmsk exon 154565581 154565691 765 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "2573"; repFamily "ERVL"; repLeft "-3141"; repStart "2463"; chr6 rmsk exon 154565703 154566592 13361 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "4336"; repFamily "ERVL"; repLeft "-1378"; repStart "3439"; chr6 rmsk exon 154566731 154568095 13361 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4337"; chr6 rmsk exon 154568097 154568180 418 + . gene_id "ERVLB4_6q25.2"; transcript_id "ERVLB4_6q25.2"; locus "ERVLB4_6q25.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0761"; repClass "LTR"; repEnd "87"; repFamily "ERVL"; repLeft "-469"; repStart "2"; ### HERVL40_6q25.2b ### chr6 rmsk gene 154603362 154605433 . + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0195"; model_cov "815"; model_pct "14.7"; chr6 rmsk exon 154603362 154603457 287 + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0195"; repClass "LTR"; repEnd "107"; repFamily "ERVL"; repLeft "-5423"; repStart "4"; chr6 rmsk exon 154603637 154603894 593 + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0195"; repClass "LTR"; repEnd "1195"; repFamily "ERVL"; repLeft "-4335"; repStart "919"; chr6 rmsk exon 154604214 154604456 829 + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0195"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1368"; chr6 rmsk exon 154604557 154604722 551 + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0195"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "-2650"; repStart "2693"; chr6 rmsk exon 154605088 154605433 1153 + . gene_id "HERVL40_6q25.2b"; transcript_id "HERVL40_6q25.2b"; locus "HERVL40_6q25.2b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0195"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-7"; repStart "98"; ### HERVL_6q25.3a ### chr6 rmsk gene 155603706 155605077 . - . gene_id "HERVL_6q25.3a"; transcript_id "HERVL_6q25.3a"; locus "HERVL_6q25.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0656"; model_cov "868"; model_pct "15.4"; chr6 rmsk exon 155603706 155604216 2780 - . gene_id "HERVL_6q25.3a"; transcript_id "HERVL_6q25.3a"; locus "HERVL_6q25.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0656"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 155604217 155605077 6817 - . gene_id "HERVL_6q25.3a"; transcript_id "HERVL_6q25.3a"; locus "HERVL_6q25.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0656"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4786"; repStart "0"; ### MER61_6q25.3 ### chr6 rmsk gene 155609661 155611216 . - . gene_id "MER61_6q25.3"; transcript_id "MER61_6q25.3"; locus "MER61_6q25.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0198"; model_cov "809"; model_pct "15.5"; chr6 rmsk exon 155609661 155610063 1995 - . gene_id "MER61_6q25.3"; transcript_id "MER61_6q25.3"; locus "MER61_6q25.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0198"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "114"; repStart "0"; chr6 rmsk exon 155610108 155611216 11389 - . gene_id "MER61_6q25.3"; transcript_id "MER61_6q25.3"; locus "MER61_6q25.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0198"; repClass "LTR"; repEnd "3990"; repFamily "ERV1"; repLeft "3181"; repStart "-1227"; ### MER41_6q25.3a ### chr6 rmsk gene 155611577 155615426 . - . gene_id "MER41_6q25.3a"; transcript_id "MER41_6q25.3a"; locus "MER41_6q25.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0244"; model_cov "4463"; model_pct "75.1"; chr6 rmsk exon 155611577 155615313 13774 - . gene_id "MER41_6q25.3a"; transcript_id "MER41_6q25.3a"; locus "MER41_6q25.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0244"; repClass "LTR"; repEnd "3934"; repFamily "ERV1"; repLeft "-498"; repStart "-2012"; chr6 rmsk exon 155615391 155615426 2783 - . gene_id "MER41_6q25.3a"; transcript_id "MER41_6q25.3a"; locus "MER41_6q25.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0244"; repClass "LTR"; repEnd "-402"; repFamily "ERV1"; repLeft "-433"; repStart "-6348"; ### MER101_6q25.3a ### chr6 rmsk gene 156483678 156485834 . - . gene_id "MER101_6q25.3a"; transcript_id "MER101_6q25.3a"; locus "MER101_6q25.3a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0195"; model_cov "1518"; model_pct "22.9"; chr6 rmsk exon 156483678 156483856 1334 - . gene_id "MER101_6q25.3a"; transcript_id "MER101_6q25.3a"; locus "MER101_6q25.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0195"; repClass "LTR"; repEnd "3069"; repFamily "ERV1"; repLeft "2886"; repStart "-3570"; chr6 rmsk exon 156484429 156484571 1334 - . gene_id "MER101_6q25.3a"; transcript_id "MER101_6q25.3a"; locus "MER101_6q25.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0195"; repClass "LTR"; repEnd "2885"; repFamily "ERV1"; repLeft "2759"; repStart "-3754"; chr6 rmsk exon 156484716 156484819 2071 - . gene_id "MER101_6q25.3a"; transcript_id "MER101_6q25.3a"; locus "MER101_6q25.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0195"; repClass "LTR"; repEnd "2751"; repFamily "ERV1"; repLeft "2643"; repStart "-3888"; chr6 rmsk exon 156485115 156485834 2071 - . gene_id "MER101_6q25.3a"; transcript_id "MER101_6q25.3a"; locus "MER101_6q25.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0195"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "1541"; repStart "-3997"; ### ERVLE_6q25.3a ### chr6 rmsk gene 156650031 156652333 . + . gene_id "ERVLE_6q25.3a"; transcript_id "ERVLE_6q25.3a"; locus "ERVLE_6q25.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1759"; model_cov "1530"; model_pct "27.0"; chr6 rmsk exon 156650031 156650605 1107 + . gene_id "ERVLE_6q25.3a"; transcript_id "ERVLE_6q25.3a"; locus "ERVLE_6q25.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1759"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "-18"; repStart "10"; chr6 rmsk exon 156650611 156651758 2695 + . gene_id "ERVLE_6q25.3a"; transcript_id "ERVLE_6q25.3a"; locus "ERVLE_6q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1759"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "-4453"; repStart "3"; chr6 rmsk exon 156652050 156652333 2695 + . gene_id "ERVLE_6q25.3a"; transcript_id "ERVLE_6q25.3a"; locus "ERVLE_6q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1759"; repClass "LTR"; repEnd "1534"; repFamily "ERVL"; repLeft "-4133"; repStart "1215"; ### HERVH_6q25.3a ### chr6 rmsk gene 157700642 157706582 . - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0610"; model_cov "4909"; model_pct "63.6"; chr6 rmsk exon 157700642 157701092 3631 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 157701093 157701468 2475 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 157701467 157701683 1312 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 157701685 157702358 4406 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr6 rmsk exon 157702351 157702843 3423 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3500"; repStart "-3721"; chr6 rmsk exon 157702843 157702990 826 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 157702985 157706083 16521 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 157706086 157706582 3181 - . gene_id "HERVH_6q25.3a"; transcript_id "HERVH_6q25.3a"; locus "HERVH_6q25.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0610"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVK11_6q25.3 ### chr6 rmsk gene 158296613 158303618 . - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; category "insert*"; intModel "HERVK11-int"; locid "HERVK11-int_0045"; model_cov "3749"; model_pct "47.1"; chr6 rmsk exon 158296613 158297711 8039 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 158297712 158298468 4465 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "1"; repStart "-297"; chr6 rmsk exon 158298469 158298562 782 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "7860"; repStart "0"; chr6 rmsk exon 158298564 158302141 35278 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "7206"; repFamily "ERVK"; repLeft "3550"; repStart "-747"; chr6 rmsk exon 158302208 158303244 35278 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "7206"; repFamily "ERVK"; repLeft "6145"; repStart "-747"; chr6 rmsk exon 158303245 158303618 2024 - . gene_id "HERVK11_6q25.3"; transcript_id "HERVK11_6q25.3"; locus "HERVK11_6q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0045"; repClass "LTR"; repEnd "1243"; repFamily "ERVK"; repLeft "933"; repStart "-23"; ### MER101_6q25.3b ### chr6 rmsk gene 158550910 158552699 . - . gene_id "MER101_6q25.3b"; transcript_id "MER101_6q25.3b"; locus "MER101_6q25.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0196"; model_cov "1799"; model_pct "27.1"; chr6 rmsk exon 158550910 158550966 1228 - . gene_id "MER101_6q25.3b"; transcript_id "MER101_6q25.3b"; locus "MER101_6q25.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0196"; repClass "LTR"; repEnd "5127"; repFamily "ERV1"; repLeft "5074"; repStart "-1512"; chr6 rmsk exon 158551259 158551768 1228 - . gene_id "MER101_6q25.3b"; transcript_id "MER101_6q25.3b"; locus "MER101_6q25.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0196"; repClass "LTR"; repEnd "5073"; repFamily "ERV1"; repLeft "4556"; repStart "-1566"; chr6 rmsk exon 158551749 158552699 4237 - . gene_id "MER101_6q25.3b"; transcript_id "MER101_6q25.3b"; locus "MER101_6q25.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0196"; repClass "LTR"; repEnd "3715"; repFamily "ERV1"; repLeft "2486"; repStart "-2924"; ### LTR19_6q25.3a ### chr6 rmsk gene 158611716 158613921 . - . gene_id "LTR19_6q25.3a"; transcript_id "LTR19_6q25.3a"; locus "LTR19_6q25.3a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0019"; model_cov "3111"; model_pct "55.7"; chr6 rmsk exon 158611716 158612301 3171 - . gene_id "LTR19_6q25.3a"; transcript_id "LTR19_6q25.3a"; locus "LTR19_6q25.3a"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0019"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 158612303 158613921 6317 - . gene_id "LTR19_6q25.3a"; transcript_id "LTR19_6q25.3a"; locus "LTR19_6q25.3a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0019"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "1951"; repStart "-524"; ### LTR19_6q25.3b ### chr6 rmsk gene 158619516 158621390 . - . gene_id "LTR19_6q25.3b"; transcript_id "LTR19_6q25.3b"; locus "LTR19_6q25.3b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0020"; model_cov "1006"; model_pct "18.0"; chr6 rmsk exon 158619516 158619588 6459 - . gene_id "LTR19_6q25.3b"; transcript_id "LTR19_6q25.3b"; locus "LTR19_6q25.3b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0020"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "954"; repStart "-4578"; chr6 rmsk exon 158619890 158620829 6459 - . gene_id "LTR19_6q25.3b"; transcript_id "LTR19_6q25.3b"; locus "LTR19_6q25.3b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0020"; repClass "LTR"; repEnd "953"; repFamily "ERV1"; repLeft "1"; repStart "-4633"; chr6 rmsk exon 158620830 158621390 3308 - . gene_id "LTR19_6q25.3b"; transcript_id "LTR19_6q25.3b"; locus "LTR19_6q25.3b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0020"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_6q25.3 ### chr6 rmsk gene 158729866 158733323 . + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0071"; model_cov "1480"; model_pct "29.0"; chr6 rmsk exon 158729866 158730475 3975 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "13"; chr6 rmsk exon 158730479 158730998 2222 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-4639"; repStart "4"; chr6 rmsk exon 158731545 158731591 697 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "3155"; repFamily "ERV1"; repLeft "-1947"; repStart "3106"; chr6 rmsk exon 158731893 158732253 697 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "3509"; repFamily "ERV1"; repLeft "-1593"; repStart "3156"; chr6 rmsk exon 158732274 158732891 3030 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "4342"; repFamily "ERV1"; repLeft "-760"; repStart "3723"; chr6 rmsk exon 158732994 158733323 3851 + . gene_id "HERVIP10FH_6q25.3"; transcript_id "HERVIP10FH_6q25.3"; locus "HERVIP10FH_6q25.3"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0071"; repClass "LTR"; repEnd "332"; repFamily "ERV1"; repLeft "-301"; repStart "1"; ### HERVH_6q25.3b ### chr6 rmsk gene 158880386 158889215 . - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0611"; model_cov "7230"; model_pct "93.7"; chr6 rmsk exon 158880386 158880809 2196 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "456"; repFamily "ERV1"; repLeft "-6"; repStart "-8"; chr6 rmsk exon 158880810 158882510 27608 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6018"; repStart "0"; chr6 rmsk exon 158882811 158885521 27608 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "3357"; repStart "-1696"; chr6 rmsk exon 158885515 158887921 7251 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "4136"; repFamily "ERV1"; repLeft "1655"; repStart "-3577"; chr6 rmsk exon 158888232 158888269 3655 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "793"; repStart "-6889"; chr6 rmsk exon 158888237 158888502 886 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "291"; repStart "-7194"; chr6 rmsk exon 158888619 158888751 685 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "136"; repFamily "ERV1"; repLeft "1"; repStart "-7577"; chr6 rmsk exon 158888752 158889215 3839 - . gene_id "HERVH_6q25.3b"; transcript_id "HERVH_6q25.3b"; locus "HERVH_6q25.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0611"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_6q25.3b ### chr6 rmsk gene 159068001 159068741 . + . gene_id "ERVLE_6q25.3b"; transcript_id "ERVLE_6q25.3b"; locus "ERVLE_6q25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1760"; model_cov "780"; model_pct "13.8"; chr6 rmsk exon 159068001 159068741 1452 + . gene_id "ERVLE_6q25.3b"; transcript_id "ERVLE_6q25.3b"; locus "ERVLE_6q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1760"; repClass "LTR"; repEnd "5492"; repFamily "ERVL"; repLeft "-175"; repStart "4712"; ### HERVL_6q25.3b ### chr6 rmsk gene 159365714 159371785 . - . gene_id "HERVL_6q25.3b"; transcript_id "HERVL_6q25.3b"; locus "HERVL_6q25.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0657"; model_cov "4717"; model_pct "83.4"; chr6 rmsk exon 159365714 159365756 377 - . gene_id "HERVL_6q25.3b"; transcript_id "HERVL_6q25.3b"; locus "HERVL_6q25.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0657"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "411"; repStart "0"; chr6 rmsk exon 159365757 159366765 8309 - . gene_id "HERVL_6q25.3b"; transcript_id "HERVL_6q25.3b"; locus "HERVL_6q25.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0657"; repClass "LTR"; repEnd "4704"; repFamily "ERVL"; repLeft "3702"; repStart "-950"; chr6 rmsk exon 159367659 159371341 29042 - . gene_id "HERVL_6q25.3b"; transcript_id "HERVL_6q25.3b"; locus "HERVL_6q25.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0657"; repClass "LTR"; repEnd "3716"; repFamily "ERVL"; repLeft "1"; repStart "-1938"; chr6 rmsk exon 159371342 159371785 3307 - . gene_id "HERVL_6q25.3b"; transcript_id "HERVL_6q25.3b"; locus "HERVL_6q25.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0657"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_6q25.3c ### chr6 rmsk gene 160228651 160234322 . + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0612"; model_cov "4987"; model_pct "64.7"; chr6 rmsk exon 160228651 160229043 2166 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chr6 rmsk exon 160229052 160231741 13647 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr6 rmsk exon 160231742 160232709 5298 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "4290"; repFamily "ERV1"; repLeft "-3423"; repStart "3357"; chr6 rmsk exon 160232708 160233499 5770 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "5016"; repFamily "ERV1"; repLeft "-2697"; repStart "4221"; chr6 rmsk exon 160233503 160233925 2639 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr6 rmsk exon 160233926 160234322 2526 + . gene_id "HERVH_6q25.3c"; transcript_id "HERVH_6q25.3c"; locus "HERVH_6q25.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0612"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_6q25.3b ### chr6 rmsk gene 160234324 160238218 . + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0248"; model_cov "4157"; model_pct "69.9"; chr6 rmsk exon 160234324 160234606 1354 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0248"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "434"; chr6 rmsk exon 160234608 160234962 2299 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0248"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-5166"; repStart "414"; chr6 rmsk exon 160234960 160235058 545 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0248"; repClass "LTR"; repEnd "1991"; repFamily "ERV1"; repLeft "-3955"; repStart "1898"; chr6 rmsk exon 160235055 160235495 2724 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0248"; repClass "LTR"; repEnd "2619"; repFamily "ERV1"; repLeft "-3327"; repStart "2167"; chr6 rmsk exon 160235502 160237665 12938 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0248"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "2955"; chr6 rmsk exon 160237667 160238218 4167 + . gene_id "MER41_6q25.3b"; transcript_id "MER41_6q25.3b"; locus "MER41_6q25.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0248"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVH_6q25.3d ### chr6 rmsk gene 160286611 160292314 . - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0613"; model_cov "4917"; model_pct "63.7"; chr6 rmsk exon 160286611 160287011 2592 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 160287012 160287390 2392 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 160287389 160287605 1398 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 160287610 160288280 4489 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4478"; repStart "-2567"; chr6 rmsk exon 160288273 160288772 3519 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3492"; repStart "-3721"; chr6 rmsk exon 160288765 160288910 893 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr6 rmsk exon 160288897 160291910 21542 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr6 rmsk exon 160291913 160292314 2578 - . gene_id "HERVH_6q25.3d"; transcript_id "HERVH_6q25.3d"; locus "HERVH_6q25.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0613"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_6q25.3 ### chr6 rmsk gene 160318599 160322116 . + . gene_id "ERV316A3_6q25.3"; transcript_id "ERV316A3_6q25.3"; locus "ERV316A3_6q25.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1350"; model_cov "3181"; model_pct "60.9"; chr6 rmsk exon 160318599 160318917 1783 + . gene_id "ERV316A3_6q25.3"; transcript_id "ERV316A3_6q25.3"; locus "ERV316A3_6q25.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1350"; repClass "LTR"; repEnd "1161"; repFamily "ERVL"; repLeft "-4065"; repStart "820"; chr6 rmsk exon 160319268 160319631 1783 + . gene_id "ERV316A3_6q25.3"; transcript_id "ERV316A3_6q25.3"; locus "ERV316A3_6q25.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1350"; repClass "LTR"; repEnd "1508"; repFamily "ERVL"; repLeft "-3718"; repStart "1162"; chr6 rmsk exon 160319636 160321581 3659 + . gene_id "ERV316A3_6q25.3"; transcript_id "ERV316A3_6q25.3"; locus "ERV316A3_6q25.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1350"; repClass "LTR"; repEnd "3347"; repFamily "ERVL"; repLeft "-1879"; repStart "1428"; chr6 rmsk exon 160321590 160322116 975 + . gene_id "ERV316A3_6q25.3"; transcript_id "ERV316A3_6q25.3"; locus "ERV316A3_6q25.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1350"; repClass "LTR"; repEnd "4206"; repFamily "ERVL"; repLeft "-1020"; repStart "3631"; ### HERVL_6q25.3c ### chr6 rmsk gene 160501907 160505582 . - . gene_id "HERVL_6q25.3c"; transcript_id "HERVL_6q25.3c"; locus "HERVL_6q25.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0658"; model_cov "3200"; model_pct "56.6"; chr6 rmsk exon 160501907 160505098 24890 - . gene_id "HERVL_6q25.3c"; transcript_id "HERVL_6q25.3c"; locus "HERVL_6q25.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0658"; repClass "LTR"; repEnd "3201"; repFamily "ERVL"; repLeft "1"; repStart "-2453"; chr6 rmsk exon 160505099 160505140 3046 - . gene_id "HERVL_6q25.3c"; transcript_id "HERVL_6q25.3c"; locus "HERVL_6q25.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0658"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "412"; repStart "0"; chr6 rmsk exon 160505192 160505582 3046 - . gene_id "HERVL_6q25.3c"; transcript_id "HERVL_6q25.3c"; locus "HERVL_6q25.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0658"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "2"; repStart "-42"; ### HERVL_6q26a ### chr6 rmsk gene 160653888 160659200 . - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0659"; model_cov "3983"; model_pct "70.4"; chr6 rmsk exon 160653888 160653966 427 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "364"; repStart "0"; chr6 rmsk exon 160654092 160654509 2725 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-108"; repStart "-34"; chr6 rmsk exon 160654510 160654813 1638 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5386"; repStart "0"; chr6 rmsk exon 160654816 160657398 29184 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "3717"; repFamily "ERVL"; repLeft "1131"; repStart "-1937"; chr6 rmsk exon 160657697 160658830 29184 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "1"; repStart "-4524"; chr6 rmsk exon 160658928 160659200 1642 - . gene_id "HERVL_6q26a"; transcript_id "HERVL_6q26a"; locus "HERVL_6q26a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0659"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "71"; repStart "-40"; ### HERVH_6q26 ### chr6 rmsk gene 160777230 160780906 . + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0614"; model_cov "3443"; model_pct "44.6"; chr6 rmsk exon 160777230 160778291 6325 + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0614"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1901"; chr6 rmsk exon 160778278 160779127 5943 + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0614"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr6 rmsk exon 160779185 160780240 6454 + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0614"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "3951"; chr6 rmsk exon 160780245 160780677 2860 + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0614"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr6 rmsk exon 160780678 160780906 968 + . gene_id "HERVH_6q26"; transcript_id "HERVH_6q26"; locus "HERVH_6q26"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0614"; repClass "LTR"; repEnd "290"; repFamily "ERV1"; repLeft "-174"; repStart "15"; ### HERVIP10FH_6q26a ### chr6 rmsk gene 160788118 160793721 . + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0072"; model_cov "3818"; model_pct "74.8"; chr6 rmsk exon 160788118 160788698 4720 + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0072"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr6 rmsk exon 160788723 160789648 2885 + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0072"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "-4463"; repStart "22"; chr6 rmsk exon 160789930 160790416 2421 + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0072"; repClass "LTR"; repEnd "863"; repFamily "ERV1"; repLeft "-4239"; repStart "383"; chr6 rmsk exon 160790836 160793520 9900 + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0072"; repClass "LTR"; repEnd "4705"; repFamily "ERV1"; repLeft "-397"; repStart "2045"; chr6 rmsk exon 160793648 160793721 356 + . gene_id "HERVIP10FH_6q26a"; transcript_id "HERVIP10FH_6q26a"; locus "HERVIP10FH_6q26a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0072"; repClass "LTR"; repEnd "4746"; repFamily "ERV1"; repLeft "-356"; repStart "4685"; ### PABLA_6q26a ### chr6 rmsk gene 160796255 160799280 . + . gene_id "PABLA_6q26a"; transcript_id "PABLA_6q26a"; locus "PABLA_6q26a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0063"; model_cov "3981"; model_pct "79.4"; chr6 rmsk exon 160796255 160796837 3776 + . gene_id "PABLA_6q26a"; transcript_id "PABLA_6q26a"; locus "PABLA_6q26a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0063"; repClass "LTR"; repEnd "-323"; repFamily "ERV1"; repLeft "-5338"; repStart "-930"; chr6 rmsk exon 160796887 160797781 4938 + . gene_id "PABLA_6q26a"; transcript_id "PABLA_6q26a"; locus "PABLA_6q26a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0063"; repClass "LTR"; repEnd "2316"; repFamily "ERV1"; repLeft "-2699"; repStart "1029"; chr6 rmsk exon 160797833 160799280 4938 + . gene_id "PABLA_6q26a"; transcript_id "PABLA_6q26a"; locus "PABLA_6q26a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0063"; repClass "LTR"; repEnd "4404"; repFamily "ERV1"; repLeft "-611"; repStart "2317"; ### MER41_6q26a ### chr6 rmsk gene 160799276 160800532 . + . gene_id "MER41_6q26a"; transcript_id "MER41_6q26a"; locus "MER41_6q26a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0249"; model_cov "712"; model_pct "12.0"; chr6 rmsk exon 160799276 160799800 4881 + . gene_id "MER41_6q26a"; transcript_id "MER41_6q26a"; locus "MER41_6q26a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0249"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5232"; chr6 rmsk exon 160799983 160800532 3970 + . gene_id "MER41_6q26a"; transcript_id "MER41_6q26a"; locus "MER41_6q26a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0249"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_6q26 ### chr6 rmsk gene 160883402 160884426 . + . gene_id "PRIMA4_6q26"; transcript_id "PRIMA4_6q26"; locus "PRIMA4_6q26"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0100"; model_cov "1009"; model_pct "12.2"; chr6 rmsk exon 160883402 160884426 3101 + . gene_id "PRIMA4_6q26"; transcript_id "PRIMA4_6q26"; locus "PRIMA4_6q26"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0100"; repClass "LTR"; repEnd "1010"; repFamily "ERV1"; repLeft "-7260"; repStart "1"; ### MER4_6q26a ### chr6 rmsk gene 160884507 160889673 . + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0354"; model_cov "5024"; model_pct "76.1"; chr6 rmsk exon 160884507 160884557 332 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "-5712"; repStart "836"; chr6 rmsk exon 160884556 160884955 1427 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "504"; chr6 rmsk exon 160884954 160885601 3695 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "2605"; repFamily "ERV1"; repLeft "-3993"; repStart "1804"; chr6 rmsk exon 160885821 160886405 3695 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "3331"; repFamily "ERV1"; repLeft "-3267"; repStart "2606"; chr6 rmsk exon 160886387 160887925 12119 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "5516"; repFamily "ERV1"; repLeft "-1082"; repStart "3911"; chr6 rmsk exon 160888237 160889218 12119 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0354"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5517"; chr6 rmsk exon 160889225 160889673 3189 + . gene_id "MER4_6q26a"; transcript_id "MER4_6q26a"; locus "MER4_6q26a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0354"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_6q26b ### chr6 rmsk gene 161209918 161214377 . + . gene_id "MER4_6q26b"; transcript_id "MER4_6q26b"; locus "MER4_6q26b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0355"; model_cov "4533"; model_pct "68.7"; chr6 rmsk exon 161209918 161210903 6393 + . gene_id "MER4_6q26b"; transcript_id "MER4_6q26b"; locus "MER4_6q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0355"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1476"; chr6 rmsk exon 161211127 161212842 7564 + . gene_id "MER4_6q26b"; transcript_id "MER4_6q26b"; locus "MER4_6q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0355"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "-1457"; repStart "2736"; chr6 rmsk exon 161212842 161213911 7125 + . gene_id "MER4_6q26b"; transcript_id "MER4_6q26b"; locus "MER4_6q26b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0355"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "5475"; chr6 rmsk exon 161213941 161214377 3148 + . gene_id "MER4_6q26b"; transcript_id "MER4_6q26b"; locus "MER4_6q26b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0355"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### MER41_6q26b ### chr6 rmsk gene 161292492 161299086 . + . gene_id "MER41_6q26b"; transcript_id "MER41_6q26b"; locus "MER41_6q26b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0250"; model_cov "6335"; model_pct "100.0"; chr6 rmsk exon 161292492 161294387 6929 + . gene_id "MER41_6q26b"; transcript_id "MER41_6q26b"; locus "MER41_6q26b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0250"; repClass "LTR"; repEnd "1614"; repFamily "ERV1"; repLeft "-4332"; repStart "-314"; chr6 rmsk exon 161294695 161298586 12164 + . gene_id "MER41_6q26b"; transcript_id "MER41_6q26b"; locus "MER41_6q26b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0250"; repClass "LTR"; repEnd "5756"; repFamily "ERV1"; repLeft "-190"; repStart "1538"; chr6 rmsk exon 161298881 161299086 6733 + . gene_id "MER41_6q26b"; transcript_id "MER41_6q26b"; locus "MER41_6q26b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0250"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5757"; ### HERVIP10FH_6q26b ### chr6 rmsk gene 161309654 161315874 . - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0073"; model_cov "5101"; model_pct "100.0"; chr6 rmsk exon 161309654 161310158 3569 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "508"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr6 rmsk exon 161310159 161315114 33421 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 161315115 161315515 2798 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "104"; repStart "0"; chr6 rmsk exon 161315501 161315627 650 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "153"; repFamily "ERV1"; repLeft "6"; repStart "-358"; chr6 rmsk exon 161315633 161315662 253 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "156"; repFamily "ERV1"; repLeft "127"; repStart "-355"; chr6 rmsk exon 161315663 161315874 1425 - . gene_id "HERVIP10FH_6q26b"; transcript_id "HERVIP10FH_6q26b"; locus "HERVIP10FH_6q26b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0073"; repClass "LTR"; repEnd "210"; repFamily "ERV1"; repLeft "1"; repStart "-301"; ### PABLA_6q26b ### chr6 rmsk gene 161326252 161328115 . - . gene_id "PABLA_6q26b"; transcript_id "PABLA_6q26b"; locus "PABLA_6q26b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0064"; model_cov "1554"; model_pct "31.0"; chr6 rmsk exon 161326252 161326636 4077 - . gene_id "PABLA_6q26b"; transcript_id "PABLA_6q26b"; locus "PABLA_6q26b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0064"; repClass "LTR"; repEnd "2923"; repFamily "ERV1"; repLeft "2536"; repStart "-2092"; chr6 rmsk exon 161326936 161327224 4077 - . gene_id "PABLA_6q26b"; transcript_id "PABLA_6q26b"; locus "PABLA_6q26b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0064"; repClass "LTR"; repEnd "2535"; repFamily "ERV1"; repLeft "2253"; repStart "-2480"; chr6 rmsk exon 161327224 161327681 1694 - . gene_id "PABLA_6q26b"; transcript_id "PABLA_6q26b"; locus "PABLA_6q26b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0064"; repClass "LTR"; repEnd "1713"; repFamily "ERV1"; repLeft "959"; repStart "-3302"; chr6 rmsk exon 161327982 161328115 960 - . gene_id "PABLA_6q26b"; transcript_id "PABLA_6q26b"; locus "PABLA_6q26b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0064"; repClass "LTR"; repEnd "1285"; repFamily "ERV1"; repLeft "1154"; repStart "-3730"; ### PABLA_6q26c ### chr6 rmsk gene 161328344 161329705 . - . gene_id "PABLA_6q26c"; transcript_id "PABLA_6q26c"; locus "PABLA_6q26c"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0065"; model_cov "1092"; model_pct "21.8"; chr6 rmsk exon 161328344 161329206 5516 - . gene_id "PABLA_6q26c"; transcript_id "PABLA_6q26c"; locus "PABLA_6q26c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0065"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "771"; repStart "-3366"; chr6 rmsk exon 161329189 161329207 665 - . gene_id "PABLA_6q26c"; transcript_id "PABLA_6q26c"; locus "PABLA_6q26c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0065"; repClass "LTR"; repEnd "662"; repFamily "ERV1"; repLeft "644"; repStart "-4353"; chr6 rmsk exon 161329488 161329546 665 - . gene_id "PABLA_6q26c"; transcript_id "PABLA_6q26c"; locus "PABLA_6q26c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0065"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "568"; repStart "-4372"; chr6 rmsk exon 161329584 161329705 848 - . gene_id "PABLA_6q26c"; transcript_id "PABLA_6q26c"; locus "PABLA_6q26c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0065"; repClass "LTR"; repEnd "-472"; repFamily "ERV1"; repLeft "-593"; repStart "-5487"; ### MER4_6q26c ### chr6 rmsk gene 161329709 161331695 . + . gene_id "MER4_6q26c"; transcript_id "MER4_6q26c"; locus "MER4_6q26c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0356"; model_cov "3144"; model_pct "47.7"; chr6 rmsk exon 161329709 161329804 714 + . gene_id "MER4_6q26c"; transcript_id "MER4_6q26c"; locus "MER4_6q26c"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0356"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "568"; chr6 rmsk exon 161329808 161330851 3858 + . gene_id "MER4_6q26c"; transcript_id "MER4_6q26c"; locus "MER4_6q26c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0356"; repClass "LTR"; repEnd "2662"; repFamily "ERV1"; repLeft "-3936"; repStart "653"; chr6 rmsk exon 161330912 161331695 5566 + . gene_id "MER4_6q26c"; transcript_id "MER4_6q26c"; locus "MER4_6q26c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0356"; repClass "LTR"; repEnd "2981"; repFamily "ERV1"; repLeft "-3617"; repStart "1846"; ### MER4_6q26d ### chr6 rmsk gene 161332288 161337508 . + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0357"; model_cov "3878"; model_pct "58.8"; chr6 rmsk exon 161332288 161332650 5566 + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0357"; repClass "LTR"; repEnd "2322"; repFamily "ERV1"; repLeft "-4276"; repStart "1947"; chr6 rmsk exon 161332940 161333463 14172 + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0357"; repClass "LTR"; repEnd "3007"; repFamily "ERV1"; repLeft "-3591"; repStart "2735"; chr6 rmsk exon 161333742 161335399 14172 + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0357"; repClass "LTR"; repEnd "4674"; repFamily "ERV1"; repLeft "-1924"; repStart "3008"; chr6 rmsk exon 161335693 161335711 14172 + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0357"; repClass "LTR"; repEnd "4675"; repFamily "ERV1"; repLeft "-1923"; repStart "4675"; chr6 rmsk exon 161335975 161337508 14172 + . gene_id "MER4_6q26d"; transcript_id "MER4_6q26d"; locus "MER4_6q26d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0357"; repClass "LTR"; repEnd "6240"; repFamily "ERV1"; repLeft "-358"; repStart "4675"; ### ERV316A3_6q26a ### chr6 rmsk gene 161376690 161379814 . + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1351"; model_cov "2250"; model_pct "43.1"; chr6 rmsk exon 161376690 161376867 473 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "245"; chr6 rmsk exon 161376979 161377219 311 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "3123"; repFamily "ERVL"; repLeft "-2103"; repStart "2874"; chr6 rmsk exon 161377214 161377586 604 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "-1939"; repStart "2745"; chr6 rmsk exon 161377997 161378600 895 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "-1001"; repStart "3590"; chr6 rmsk exon 161378634 161379429 1910 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "-91"; repStart "4311"; chr6 rmsk exon 161379485 161379814 829 + . gene_id "ERV316A3_6q26a"; transcript_id "ERV316A3_6q26a"; locus "ERV316A3_6q26a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1351"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "-79"; repStart "4"; ### ERVLE_6q26 ### chr6 rmsk gene 162120486 162123400 . + . gene_id "ERVLE_6q26"; transcript_id "ERVLE_6q26"; locus "ERVLE_6q26"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1763"; model_cov "2937"; model_pct "51.8"; chr6 rmsk exon 162120486 162121654 1619 + . gene_id "ERVLE_6q26"; transcript_id "ERVLE_6q26"; locus "ERVLE_6q26"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1763"; repClass "LTR"; repEnd "3207"; repFamily "ERVL"; repLeft "-2460"; repStart "1900"; chr6 rmsk exon 162121752 162121899 255 + . gene_id "ERVLE_6q26"; transcript_id "ERVLE_6q26"; locus "ERVLE_6q26"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1763"; repClass "LTR"; repEnd "3635"; repFamily "ERVL"; repLeft "-2032"; repStart "3483"; chr6 rmsk exon 162121929 162122716 2908 + . gene_id "ERVLE_6q26"; transcript_id "ERVLE_6q26"; locus "ERVLE_6q26"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1763"; repClass "LTR"; repEnd "4602"; repFamily "ERVL"; repLeft "-1065"; repStart "3751"; chr6 rmsk exon 162122760 162123400 2908 + . gene_id "ERVLE_6q26"; transcript_id "ERVLE_6q26"; locus "ERVLE_6q26"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1763"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "-437"; repStart "4603"; ### HERVL40_6q26a ### chr6 rmsk gene 162709338 162712650 . + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0196"; model_cov "1914"; model_pct "34.6"; chr6 rmsk exon 162709338 162709772 1473 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "0"; repStart "44"; chr6 rmsk exon 162710046 162710374 1227 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "1275"; repFamily "ERVL"; repLeft "-4255"; repStart "940"; chr6 rmsk exon 162710416 162710707 1227 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "-3936"; repStart "1276"; chr6 rmsk exon 162710854 162711120 999 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "3089"; repFamily "ERVL"; repLeft "-2441"; repStart "2813"; chr6 rmsk exon 162711172 162711415 938 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "3429"; repFamily "ERVL"; repLeft "-2101"; repStart "3180"; chr6 rmsk exon 162711433 162712163 2587 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "5508"; repFamily "ERVL"; repLeft "-22"; repStart "4772"; chr6 rmsk exon 162712173 162712280 466 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "-351"; repStart "7"; chr6 rmsk exon 162712269 162712650 1480 + . gene_id "HERVL40_6q26a"; transcript_id "HERVL40_6q26a"; locus "HERVL40_6q26a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0196"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-14"; repStart "59"; ### HERVL40_6q26b ### chr6 rmsk gene 162890624 162892873 . + . gene_id "HERVL40_6q26b"; transcript_id "HERVL40_6q26b"; locus "HERVL40_6q26b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0197"; model_cov "2113"; model_pct "38.2"; chr6 rmsk exon 162890624 162891221 1440 + . gene_id "HERVL40_6q26b"; transcript_id "HERVL40_6q26b"; locus "HERVL40_6q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0197"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "-2594"; repStart "2329"; chr6 rmsk exon 162891362 162892089 1881 + . gene_id "HERVL40_6q26b"; transcript_id "HERVL40_6q26b"; locus "HERVL40_6q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0197"; repClass "LTR"; repEnd "3688"; repFamily "ERVL"; repLeft "-1842"; repStart "2941"; chr6 rmsk exon 162892174 162892873 1766 + . gene_id "HERVL40_6q26b"; transcript_id "HERVL40_6q26b"; locus "HERVL40_6q26b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0197"; repClass "LTR"; repEnd "4579"; repFamily "ERVL"; repLeft "-951"; repStart "3820"; ### MER41_6q26c ### chr6 rmsk gene 163030507 163035230 . - . gene_id "MER41_6q26c"; transcript_id "MER41_6q26c"; locus "MER41_6q26c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0251"; model_cov "5870"; model_pct "98.7"; chr6 rmsk exon 163030507 163030993 3704 - . gene_id "MER41_6q26c"; transcript_id "MER41_6q26c"; locus "MER41_6q26c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0251"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "67"; repStart "0"; chr6 rmsk exon 163030994 163034703 11850 - . gene_id "MER41_6q26c"; transcript_id "MER41_6q26c"; locus "MER41_6q26c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0251"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "1"; repStart "-75"; chr6 rmsk exon 163034766 163035230 4290 - . gene_id "MER41_6q26c"; transcript_id "MER41_6q26c"; locus "MER41_6q26c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0251"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "99"; repStart "0"; ### ERV316A3_6q26b ### chr6 rmsk gene 163654017 163655654 . - . gene_id "ERV316A3_6q26b"; transcript_id "ERV316A3_6q26b"; locus "ERV316A3_6q26b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1352"; model_cov "1626"; model_pct "31.1"; chr6 rmsk exon 163654017 163655654 4723 - . gene_id "ERV316A3_6q26b"; transcript_id "ERV316A3_6q26b"; locus "ERV316A3_6q26b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1352"; repClass "LTR"; repEnd "4548"; repFamily "ERVL"; repLeft "2922"; repStart "-678"; ### HERVL_6q26b ### chr6 rmsk gene 163676346 163677775 . + . gene_id "HERVL_6q26b"; transcript_id "HERVL_6q26b"; locus "HERVL_6q26b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0660"; model_cov "880"; model_pct "15.6"; chr6 rmsk exon 163676346 163677217 6317 + . gene_id "HERVL_6q26b"; transcript_id "HERVL_6q26b"; locus "HERVL_6q26b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0660"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4774"; chr6 rmsk exon 163677218 163677775 2121 + . gene_id "HERVL_6q26b"; transcript_id "HERVL_6q26b"; locus "HERVL_6q26b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0660"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERV316A3_6q26c ### chr6 rmsk gene 164080103 164081277 . - . gene_id "ERV316A3_6q26c"; transcript_id "ERV316A3_6q26c"; locus "ERV316A3_6q26c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1353"; model_cov "1118"; model_pct "21.4"; chr6 rmsk exon 164080103 164080725 765 - . gene_id "ERV316A3_6q26c"; transcript_id "ERV316A3_6q26c"; locus "ERV316A3_6q26c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1353"; repClass "LTR"; repEnd "4950"; repFamily "ERVL"; repLeft "4270"; repStart "-276"; chr6 rmsk exon 164080867 164081277 894 - . gene_id "ERV316A3_6q26c"; transcript_id "ERV316A3_6q26c"; locus "ERV316A3_6q26c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1353"; repClass "LTR"; repEnd "1008"; repFamily "ERVL"; repLeft "570"; repStart "-4218"; ### HERVH_6q27a ### chr6 rmsk gene 164338769 164344779 . - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0615"; model_cov "4905"; model_pct "63.6"; chr6 rmsk exon 164338769 164339178 2875 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 164339179 164339557 2320 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr6 rmsk exon 164339556 164339772 1322 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr6 rmsk exon 164339770 164340431 4326 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr6 rmsk exon 164340432 164340928 3440 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "3500"; repStart "-3718"; chr6 rmsk exon 164340928 164341075 863 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 164341070 164344368 15821 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 164344371 164344779 2814 - . gene_id "HERVH_6q27a"; transcript_id "HERVH_6q27a"; locus "HERVH_6q27a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0615"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVL_6q27a ### chr6 rmsk gene 164461798 164463627 . - . gene_id "ERVL_6q27a"; transcript_id "ERVL_6q27a"; locus "ERVL_6q27a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0196"; model_cov "1336"; model_pct "23.2"; chr6 rmsk exon 164461798 164462307 1587 - . gene_id "ERVL_6q27a"; transcript_id "ERVL_6q27a"; locus "ERVL_6q27a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0196"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6 rmsk exon 164462308 164463627 6393 - . gene_id "ERVL_6q27a"; transcript_id "ERVL_6q27a"; locus "ERVL_6q27a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0196"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4421"; repStart "0"; ### ERVLB4_6q27a ### chr6 rmsk gene 164463625 164465971 . - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0762"; model_cov "1228"; model_pct "21.5"; chr6 rmsk exon 164463625 164464303 4024 - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0762"; repClass "LTR"; repEnd "2522"; repFamily "ERVL"; repLeft "1842"; repStart "-3192"; chr6 rmsk exon 164464312 164464802 2230 - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0762"; repClass "LTR"; repEnd "725"; repFamily "ERVL"; repLeft "247"; repStart "-4989"; chr6 rmsk exon 164465172 164465235 336 - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0762"; repClass "LTR"; repEnd "128"; repFamily "ERVL"; repLeft "58"; repStart "-5586"; chr6 rmsk exon 164465236 164465307 1002 - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0762"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "394"; repStart "-65"; chr6 rmsk exon 164465618 164465971 1002 - . gene_id "ERVLB4_6q27a"; transcript_id "ERVLB4_6q27a"; locus "ERVLB4_6q27a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0762"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "36"; repStart "-127"; ### HERVH_6q27b ### chr6 rmsk gene 164652142 164658014 . - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0616"; model_cov "4960"; model_pct "64.3"; chr6 rmsk exon 164652142 164652551 2602 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr6 rmsk exon 164652552 164652935 2410 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7315"; repStart "0"; chr6 rmsk exon 164652929 164653145 1357 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr6 rmsk exon 164653147 164653509 2125 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4782"; repStart "-2564"; chr6 rmsk exon 164653501 164653849 2350 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "4835"; repFamily "ERV1"; repLeft "4488"; repStart "-2878"; chr6 rmsk exon 164653852 164654345 3405 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr6 rmsk exon 164654345 164654492 828 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr6 rmsk exon 164654487 164657651 17253 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr6 rmsk exon 164657654 164658014 2172 - . gene_id "HERVH_6q27b"; transcript_id "HERVH_6q27b"; locus "HERVH_6q27b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0616"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_6q27a ### chr6 rmsk gene 164807537 164814293 . - . gene_id "HERVL_6q27a"; transcript_id "HERVL_6q27a"; locus "HERVL_6q27a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0661"; model_cov "5652"; model_pct "100.0"; chr6 rmsk exon 164807537 164808069 1705 - . gene_id "HERVL_6q27a"; transcript_id "HERVL_6q27a"; locus "HERVL_6q27a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0661"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-98"; repStart "-4"; chr6 rmsk exon 164808073 164813749 35531 - . gene_id "HERVL_6q27a"; transcript_id "HERVL_6q27a"; locus "HERVL_6q27a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0661"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr6 rmsk exon 164813750 164814293 1834 - . gene_id "HERVL_6q27a"; transcript_id "HERVL_6q27a"; locus "HERVL_6q27a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0661"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERVLB4_6q27b ### chr6 rmsk gene 164873923 164879776 . + . gene_id "ERVLB4_6q27b"; transcript_id "ERVLB4_6q27b"; locus "ERVLB4_6q27b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0763"; model_cov "5148"; model_pct "90.1"; chr6 rmsk exon 164873923 164877128 27831 + . gene_id "ERVLB4_6q27b"; transcript_id "ERVLB4_6q27b"; locus "ERVLB4_6q27b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0763"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "-2057"; repStart "387"; chr6 rmsk exon 164877493 164879187 27831 + . gene_id "ERVLB4_6q27b"; transcript_id "ERVLB4_6q27b"; locus "ERVLB4_6q27b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0763"; repClass "LTR"; repEnd "5377"; repFamily "ERVL"; repLeft "-337"; repStart "3658"; chr6 rmsk exon 164879191 164879349 1025 + . gene_id "ERVLB4_6q27b"; transcript_id "ERVLB4_6q27b"; locus "ERVLB4_6q27b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0763"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5555"; chr6 rmsk exon 164879350 164879776 1693 + . gene_id "ERVLB4_6q27b"; transcript_id "ERVLB4_6q27b"; locus "ERVLB4_6q27b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0763"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HUERSP3B_6q27 ### chr6 rmsk gene 165049125 165051468 . + . gene_id "HUERSP3B_6q27"; transcript_id "HUERSP3B_6q27"; locus "HUERSP3B_6q27"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0069"; model_cov "2249"; model_pct "30.3"; chr6 rmsk exon 165049125 165049247 710 + . gene_id "HUERSP3B_6q27"; transcript_id "HUERSP3B_6q27"; locus "HUERSP3B_6q27"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0069"; repClass "LTR"; repEnd "119"; repFamily "ERV1"; repLeft "-493"; repStart "1"; chr6 rmsk exon 165049248 165051468 11388 + . gene_id "HUERSP3B_6q27"; transcript_id "HUERSP3B_6q27"; locus "HUERSP3B_6q27"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0069"; repClass "LTR"; repEnd "2652"; repFamily "ERV1"; repLeft "-4766"; repStart "403"; ### HERVP71A_6q27 ### chr6 rmsk gene 165057200 165066263 . - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0036"; model_cov "7584"; model_pct "99.9"; chr6 rmsk exon 165057200 165057453 1202 - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0036"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "231"; repStart "-124"; chr6 rmsk exon 165057753 165057828 1202 - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0036"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "153"; repStart "-380"; chr6 rmsk exon 165058007 165064003 38360 - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0036"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "1550"; repStart "0"; chr6 rmsk exon 165064312 165065862 38360 - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0036"; repClass "LTR"; repEnd "1549"; repFamily "ERV1"; repLeft "5"; repStart "-6041"; chr6 rmsk exon 165065866 165066263 2118 - . gene_id "HERVP71A_6q27"; transcript_id "HERVP71A_6q27"; locus "HERVP71A_6q27"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0036"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "203"; repStart "0"; ### HERVL_6q27b ### chr6 rmsk gene 165194331 165196960 . + . gene_id "HERVL_6q27b"; transcript_id "HERVL_6q27b"; locus "HERVL_6q27b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0662"; model_cov "2171"; model_pct "38.4"; chr6 rmsk exon 165194331 165194798 3252 + . gene_id "HERVL_6q27b"; transcript_id "HERVL_6q27b"; locus "HERVL_6q27b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0662"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 165194799 165196960 16790 + . gene_id "HERVL_6q27b"; transcript_id "HERVL_6q27b"; locus "HERVL_6q27b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0662"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "-3482"; repStart "1"; ### ERVLE_6q27a ### chr6 rmsk gene 165451911 165455404 . + . gene_id "ERVLE_6q27a"; transcript_id "ERVLE_6q27a"; locus "ERVLE_6q27a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1765"; model_cov "1013"; model_pct "17.9"; chr6 rmsk exon 165451911 165452348 1073 + . gene_id "ERVLE_6q27a"; transcript_id "ERVLE_6q27a"; locus "ERVLE_6q27a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1765"; repClass "LTR"; repEnd "1548"; repFamily "ERVL"; repLeft "-4119"; repStart "1071"; chr6 rmsk exon 165454769 165455141 1086 + . gene_id "ERVLE_6q27a"; transcript_id "ERVLE_6q27a"; locus "ERVLE_6q27a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1765"; repClass "LTR"; repEnd "1911"; repFamily "ERVL"; repLeft "-3756"; repStart "1544"; chr6 rmsk exon 165455238 165455404 624 + . gene_id "ERVLE_6q27a"; transcript_id "ERVLE_6q27a"; locus "ERVLE_6q27a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1765"; repClass "LTR"; repEnd "2122"; repFamily "ERVL"; repLeft "-3545"; repStart "1953"; ### HML3_6q27a ### chr6 rmsk gene 165459605 165464178 . + . gene_id "HML3_6q27a"; transcript_id "HML3_6q27a"; locus "HML3_6q27a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0114"; model_cov "4067"; model_pct "67.5"; chr6 rmsk exon 165459605 165461378 14054 + . gene_id "HML3_6q27a"; transcript_id "HML3_6q27a"; locus "HML3_6q27a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0114"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1029"; chr6 rmsk exon 165461379 165463662 17656 + . gene_id "HML3_6q27a"; transcript_id "HML3_6q27a"; locus "HML3_6q27a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0114"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3723"; chr6 rmsk exon 165463663 165464178 4243 + . gene_id "HML3_6q27a"; transcript_id "HML3_6q27a"; locus "HML3_6q27a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0114"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_6q27c ### chr6 rmsk gene 165523822 165530340 . + . gene_id "HERVL_6q27c"; transcript_id "HERVL_6q27c"; locus "HERVL_6q27c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0663"; model_cov "5653"; model_pct "100.0"; chr6 rmsk exon 165523822 165524253 2943 + . gene_id "HERVL_6q27c"; transcript_id "HERVL_6q27c"; locus "HERVL_6q27c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0663"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 165524254 165529878 43691 + . gene_id "HERVL_6q27c"; transcript_id "HERVL_6q27c"; locus "HERVL_6q27c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0663"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6 rmsk exon 165529879 165530269 3011 + . gene_id "HERVL_6q27c"; transcript_id "HERVL_6q27c"; locus "HERVL_6q27c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0663"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-49"; repStart "1"; chr6 rmsk exon 165530299 165530340 3011 + . gene_id "HERVL_6q27c"; transcript_id "HERVL_6q27c"; locus "HERVL_6q27c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0663"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "396"; ### ERVLB4_6q27c ### chr6 rmsk gene 165583523 165585503 . + . gene_id "ERVLB4_6q27c"; transcript_id "ERVLB4_6q27c"; locus "ERVLB4_6q27c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0764"; model_cov "1260"; model_pct "22.1"; chr6 rmsk exon 165583523 165584083 2974 + . gene_id "ERVLB4_6q27c"; transcript_id "ERVLB4_6q27c"; locus "ERVLB4_6q27c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0764"; repClass "LTR"; repEnd "5038"; repFamily "ERVL"; repLeft "-676"; repStart "4448"; chr6 rmsk exon 165584662 165585303 2663 + . gene_id "ERVLB4_6q27c"; transcript_id "ERVLB4_6q27c"; locus "ERVLB4_6q27c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0764"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "5037"; chr6 rmsk exon 165585304 165585503 625 + . gene_id "ERVLB4_6q27c"; transcript_id "ERVLB4_6q27c"; locus "ERVLB4_6q27c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0764"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-209"; repStart "-15"; ### HERVL32_6q27 ### chr6 rmsk gene 166270405 166272303 . - . gene_id "HERVL32_6q27"; transcript_id "HERVL32_6q27"; locus "HERVL32_6q27"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0027"; model_cov "1453"; model_pct "42.5"; chr6 rmsk exon 166270405 166271819 3983 - . gene_id "HERVL32_6q27"; transcript_id "HERVL32_6q27"; locus "HERVL32_6q27"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0027"; repClass "LTR"; repEnd "1532"; repFamily "ERVL"; repLeft "79"; repStart "-1886"; chr6 rmsk exon 166271906 166272303 1482 - . gene_id "HERVL32_6q27"; transcript_id "HERVL32_6q27"; locus "HERVL32_6q27"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0027"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "2"; repStart "-3"; ### HERVW_6q27a ### chr6 rmsk gene 166313897 166316431 . + . gene_id "HERVW_6q27a"; transcript_id "HERVW_6q27a"; locus "HERVW_6q27a"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0152"; model_cov "2540"; model_pct "29.4"; chr6 rmsk exon 166313897 166314952 7722 + . gene_id "HERVW_6q27a"; transcript_id "HERVW_6q27a"; locus "HERVW_6q27a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0152"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "995"; chr6 rmsk exon 166314936 166316261 10914 + . gene_id "HERVW_6q27a"; transcript_id "HERVW_6q27a"; locus "HERVW_6q27a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0152"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2430"; chr6 rmsk exon 166316241 166316382 1134 + . gene_id "HERVW_6q27a"; transcript_id "HERVW_6q27a"; locus "HERVW_6q27a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0152"; repClass "LTR"; repEnd "5553"; repFamily "ERV1"; repLeft "-3073"; repStart "5405"; chr6 rmsk exon 166316384 166316431 284 + . gene_id "HERVW_6q27a"; transcript_id "HERVW_6q27a"; locus "HERVW_6q27a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0152"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "434"; ### HML1_6q27a ### chr6 rmsk gene 166316419 166317653 . + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0045"; model_cov "861"; model_pct "14.1"; chr6 rmsk exon 166316419 166316895 2127 + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0045"; repClass "LTR"; repEnd "5602"; repFamily "ERVK"; repLeft "-494"; repStart "5036"; chr6 rmsk exon 166316896 166317077 1563 + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0045"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5715"; chr6 rmsk exon 166317153 166317245 453 + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0045"; repClass "LTR"; repEnd "6086"; repFamily "ERVK"; repLeft "-10"; repStart "5973"; chr6 rmsk exon 166317255 166317302 283 + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0045"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-562"; repStart "1"; chr6 rmsk exon 166317291 166317653 2075 + . gene_id "HML1_6q27a"; transcript_id "HML1_6q27a"; locus "HML1_6q27a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0045"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; ### HML1_6q27b ### chr6 rmsk gene 166344927 166346070 . - . gene_id "HML1_6q27b"; transcript_id "HML1_6q27b"; locus "HML1_6q27b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0046"; model_cov "951"; model_pct "15.6"; chr6 rmsk exon 166344927 166345293 2078 - . gene_id "HML1_6q27b"; transcript_id "HML1_6q27b"; locus "HML1_6q27b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0046"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr6 rmsk exon 166345282 166345327 275 - . gene_id "HML1_6q27b"; transcript_id "HML1_6q27b"; locus "HML1_6q27b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0046"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; chr6 rmsk exon 166345331 166345603 1779 - . gene_id "HML1_6q27b"; transcript_id "HML1_6q27b"; locus "HML1_6q27b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0046"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5715"; repStart "0"; chr6 rmsk exon 166345598 166346070 2160 - . gene_id "HML1_6q27b"; transcript_id "HML1_6q27b"; locus "HML1_6q27b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0046"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "5036"; repStart "-490"; ### MER101_6q27a ### chr6 rmsk gene 166729641 166730715 . + . gene_id "MER101_6q27a"; transcript_id "MER101_6q27a"; locus "MER101_6q27a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0197"; model_cov "1052"; model_pct "15.8"; chr6 rmsk exon 166729641 166730715 3639 + . gene_id "MER101_6q27a"; transcript_id "MER101_6q27a"; locus "MER101_6q27a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0197"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-2704"; repStart "2883"; ### HERVW_6q27b ### chr6 rmsk gene 166891080 166898253 . + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0154"; model_cov "6347"; model_pct "73.6"; chr6 rmsk exon 166891080 166891601 4106 + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0154"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "253"; chr6 rmsk exon 166891602 166897615 49665 + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0154"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr6 rmsk exon 166897609 166897647 279 + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0154"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr6 rmsk exon 166897638 166897929 2561 + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0154"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr6 rmsk exon 166897930 166898253 2661 + . gene_id "HERVW_6q27b"; transcript_id "HERVW_6q27b"; locus "HERVW_6q27b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0154"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER101_6q27b ### chr6 rmsk gene 166918829 166922075 . + . gene_id "MER101_6q27b"; transcript_id "MER101_6q27b"; locus "MER101_6q27b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0198"; model_cov "3355"; model_pct "50.5"; chr6 rmsk exon 166918829 166920936 4615 + . gene_id "MER101_6q27b"; transcript_id "MER101_6q27b"; locus "MER101_6q27b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0198"; repClass "LTR"; repEnd "5401"; repFamily "ERV1"; repLeft "-1238"; repStart "2780"; chr6 rmsk exon 166920931 166921179 1131 + . gene_id "MER101_6q27b"; transcript_id "MER101_6q27b"; locus "MER101_6q27b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0198"; repClass "LTR"; repEnd "5897"; repFamily "ERV1"; repLeft "-742"; repStart "5619"; chr6 rmsk exon 166921182 166921624 1654 + . gene_id "MER101_6q27b"; transcript_id "MER101_6q27b"; locus "MER101_6q27b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0198"; repClass "LTR"; repEnd "6461"; repFamily "ERV1"; repLeft "-178"; repStart "6005"; chr6 rmsk exon 166921632 166922075 2414 + . gene_id "MER101_6q27b"; transcript_id "MER101_6q27b"; locus "MER101_6q27b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0198"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_6q27d ### chr6 rmsk gene 167062923 167065286 . - . gene_id "HERVL_6q27d"; transcript_id "HERVL_6q27d"; locus "HERVL_6q27d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0664"; model_cov "1390"; model_pct "24.6"; chr6 rmsk exon 167062923 167063389 3411 - . gene_id "HERVL_6q27d"; transcript_id "HERVL_6q27d"; locus "HERVL_6q27d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0664"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr6 rmsk exon 167063390 167063630 10622 - . gene_id "HERVL_6q27d"; transcript_id "HERVL_6q27d"; locus "HERVL_6q27d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0664"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5423"; repStart "0"; chr6 rmsk exon 167063939 167065103 10622 - . gene_id "HERVL_6q27d"; transcript_id "HERVL_6q27d"; locus "HERVL_6q27d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0664"; repClass "LTR"; repEnd "5422"; repFamily "ERVL"; repLeft "4263"; repStart "-232"; chr6 rmsk exon 167065104 167065286 1331 - . gene_id "HERVL_6q27d"; transcript_id "HERVL_6q27d"; locus "HERVL_6q27d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0664"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "10"; repStart "-270"; ### ERVLE_6q27b ### chr6 rmsk gene 167103396 167106637 . - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1767"; model_cov "1253"; model_pct "22.1"; chr6 rmsk exon 167103396 167103497 325 - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1767"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "5042"; repStart "-450"; chr6 rmsk exon 167104398 167104947 600 - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1767"; repClass "LTR"; repEnd "5075"; repFamily "ERVL"; repLeft "4483"; repStart "-592"; chr6 rmsk exon 167104970 167105196 364 - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1767"; repClass "LTR"; repEnd "4750"; repFamily "ERVL"; repLeft "4517"; repStart "-917"; chr6 rmsk exon 167106172 167106296 367 - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1767"; repClass "LTR"; repEnd "3054"; repFamily "ERVL"; repLeft "2922"; repStart "-2613"; chr6 rmsk exon 167106529 167106637 261 - . gene_id "ERVLE_6q27b"; transcript_id "ERVLE_6q27b"; locus "ERVLE_6q27b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1767"; repClass "LTR"; repEnd "2761"; repFamily "ERVL"; repLeft "2640"; repStart "-2906"; ### HUERSP1_6q27 ### chr6 rmsk gene 167226738 167233912 . + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0085"; model_cov "6260"; model_pct "100.0"; chr6 rmsk exon 167226738 167226885 1120 + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0085"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "544"; chr6 rmsk exon 167226886 167227366 34096 + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0085"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-5796"; repStart "1"; chr6 rmsk exon 167227675 167231799 34096 + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0085"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "-1634"; repStart "468"; chr6 rmsk exon 167232115 167233331 34096 + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0085"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4630"; chr6 rmsk exon 167233332 167233912 3938 + . gene_id "HUERSP1_6q27"; transcript_id "HUERSP1_6q27"; locus "HUERSP1_6q27"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0085"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### HERVL_6q27e ### chr6 rmsk gene 167242536 167243095 . - . gene_id "HERVL_6q27e"; transcript_id "HERVL_6q27e"; locus "HERVL_6q27e"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0665"; model_cov "571"; model_pct "10.1"; chr6 rmsk exon 167242536 167243056 4032 - . gene_id "HERVL_6q27e"; transcript_id "HERVL_6q27e"; locus "HERVL_6q27e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0665"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "3245"; repStart "-1887"; chr6 rmsk exon 167243046 167243095 281 - . gene_id "HERVL_6q27e"; transcript_id "HERVL_6q27e"; locus "HERVL_6q27e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0665"; repClass "LTR"; repEnd "2966"; repFamily "ERVL"; repLeft "2917"; repStart "-2688"; ### ERVL_6q27b ### chr6 rmsk gene 167742882 167743776 . + . gene_id "ERVL_6q27b"; transcript_id "ERVL_6q27b"; locus "ERVL_6q27b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0197"; model_cov "961"; model_pct "16.7"; chr6 rmsk exon 167742882 167743776 3846 + . gene_id "ERVL_6q27b"; transcript_id "ERVL_6q27b"; locus "ERVL_6q27b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0197"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "4795"; ### ERVLB4_6q27d ### chr6 rmsk gene 168400842 168407700 . - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0766"; model_cov "5794"; model_pct "100.0"; chr6 rmsk exon 168400842 168401352 1800 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "-6"; repStart "0"; chr6 rmsk exon 168401354 168401724 1612 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5322"; repStart "-2"; chr6 rmsk exon 168401863 168401977 562 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "5284"; repStart "-316"; chr6 rmsk exon 168401987 168404256 13228 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "5319"; repFamily "ERVL"; repLeft "3077"; repStart "-395"; chr6 rmsk exon 168404554 168407613 13228 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "3076"; repFamily "ERVL"; repLeft "28"; repStart "-2638"; chr6 rmsk exon 168407619 168407700 396 - . gene_id "ERVLB4_6q27d"; transcript_id "ERVLB4_6q27d"; locus "ERVLB4_6q27d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0766"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "400"; repStart "-68"; ### HERVH_6q27c ### chr6 rmsk gene 168678254 168679632 . - . gene_id "HERVH_6q27c"; transcript_id "HERVH_6q27c"; locus "HERVH_6q27c"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0617"; model_cov "1298"; model_pct "16.8"; chr6 rmsk exon 168678254 168678470 663 - . gene_id "HERVH_6q27c"; transcript_id "HERVH_6q27c"; locus "HERVH_6q27c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0617"; repClass "LTR"; repEnd "4531"; repFamily "ERV1"; repLeft "4314"; repStart "-3182"; chr6 rmsk exon 168678552 168678665 338 - . gene_id "HERVH_6q27c"; transcript_id "HERVH_6q27c"; locus "HERVH_6q27c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0617"; repClass "LTR"; repEnd "4283"; repFamily "ERV1"; repLeft "4170"; repStart "-3430"; chr6 rmsk exon 168678668 168679632 5814 - . gene_id "HERVH_6q27c"; transcript_id "HERVH_6q27c"; locus "HERVH_6q27c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0617"; repClass "LTR"; repEnd "3637"; repFamily "ERV1"; repLeft "2669"; repStart "-4076"; ### HERVL_6q27f ### chr6 rmsk gene 168768529 168772680 . + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0667"; model_cov "2481"; model_pct "43.9"; chr6 rmsk exon 168768529 168769142 4275 + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0667"; repClass "LTR"; repEnd "1508"; repFamily "ERVL"; repLeft "-4146"; repStart "893"; chr6 rmsk exon 168769152 168769540 13379 + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0667"; repClass "LTR"; repEnd "1731"; repFamily "ERVL"; repLeft "-3923"; repStart "1343"; chr6 rmsk exon 168770536 168771937 13379 + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0667"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2518"; repStart "1732"; chr6 rmsk exon 168772064 168772138 517 + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0667"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5580"; chr6 rmsk exon 168772139 168772680 1944 + . gene_id "HERVL_6q27f"; transcript_id "HERVL_6q27f"; locus "HERVL_6q27f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0667"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVL_6q27g ### chr6 rmsk gene 169098602 169102174 . + . gene_id "HERVL_6q27g"; transcript_id "HERVL_6q27g"; locus "HERVL_6q27g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0668"; model_cov "3009"; model_pct "53.2"; chr6 rmsk exon 169098602 169099145 1920 + . gene_id "HERVL_6q27g"; transcript_id "HERVL_6q27g"; locus "HERVL_6q27g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0668"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr6 rmsk exon 169099146 169101954 20094 + . gene_id "HERVL_6q27g"; transcript_id "HERVL_6q27g"; locus "HERVL_6q27g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0668"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "-2867"; repStart "1"; chr6 rmsk exon 169101951 169102174 1774 + . gene_id "HERVL_6q27g"; transcript_id "HERVL_6q27g"; locus "HERVL_6q27g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0668"; repClass "LTR"; repEnd "4051"; repFamily "ERVL"; repLeft "-1603"; repStart "3828"; ### MER4B_6q27 ### chr6 rmsk gene 169111738 169116343 . + . gene_id "MER4B_6q27"; transcript_id "MER4B_6q27"; locus "MER4B_6q27"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0199"; model_cov "3774"; model_pct "55.8"; chr6 rmsk exon 169111738 169112270 1627 + . gene_id "MER4B_6q27"; transcript_id "MER4B_6q27"; locus "MER4B_6q27"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0199"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-210"; repStart "1"; chr6 rmsk exon 169112269 169112409 1006 + . gene_id "MER4B_6q27"; transcript_id "MER4B_6q27"; locus "MER4B_6q27"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0199"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "628"; chr6 rmsk exon 169112410 169114618 12047 + . gene_id "MER4B_6q27"; transcript_id "MER4B_6q27"; locus "MER4B_6q27"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0199"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "-4432"; repStart "1"; chr6 rmsk exon 169114916 169116343 12047 + . gene_id "MER4B_6q27"; transcript_id "MER4B_6q27"; locus "MER4B_6q27"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0199"; repClass "LTR"; repEnd "3776"; repFamily "ERV1"; repLeft "-2982"; repStart "2327"; ### PABLA_6q27a ### chr6 rmsk gene 169333619 169336164 . - . gene_id "PABLA_6q27a"; transcript_id "PABLA_6q27a"; locus "PABLA_6q27a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0066"; model_cov "3998"; model_pct "79.7"; chr6 rmsk exon 169333619 169336164 19410 - . gene_id "PABLA_6q27a"; transcript_id "PABLA_6q27a"; locus "PABLA_6q27a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0066"; repClass "LTR"; repEnd "3752"; repFamily "ERV1"; repLeft "-246"; repStart "-1263"; ### PABLA_6q27b ### chr6 rmsk gene 169336371 169338973 . - . gene_id "PABLA_6q27b"; transcript_id "PABLA_6q27b"; locus "PABLA_6q27b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0067"; model_cov "2153"; model_pct "42.9"; chr6 rmsk exon 169336371 169337247 19410 - . gene_id "PABLA_6q27b"; transcript_id "PABLA_6q27b"; locus "PABLA_6q27b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0067"; repClass "LTR"; repEnd "3752"; repFamily "ERV1"; repLeft "2372"; repStart "-1263"; chr6 rmsk exon 169337544 169338318 19410 - . gene_id "PABLA_6q27b"; transcript_id "PABLA_6q27b"; locus "PABLA_6q27b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0067"; repClass "LTR"; repEnd "775"; repFamily "ERV1"; repLeft "2"; repStart "-4240"; chr6 rmsk exon 169338319 169338973 4875 - . gene_id "PABLA_6q27b"; transcript_id "PABLA_6q27b"; locus "PABLA_6q27b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0067"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_6q27 ### chr6 rmsk gene 169390415 169393820 . - . gene_id "LTR25_6q27"; transcript_id "LTR25_6q27"; locus "LTR25_6q27"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0058"; model_cov "4846"; model_pct "67.4"; chr6 rmsk exon 169390415 169391984 8625 - . gene_id "LTR25_6q27"; transcript_id "LTR25_6q27"; locus "LTR25_6q27"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0058"; repClass "LTR"; repEnd "7126"; repFamily "ERV1"; repLeft "4918"; repStart "-62"; chr6 rmsk exon 169391960 169393820 3876 - . gene_id "LTR25_6q27"; transcript_id "LTR25_6q27"; locus "LTR25_6q27"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0058"; repClass "LTR"; repEnd "6806"; repFamily "ERV1"; repLeft "4168"; repStart "-382"; ### HUERSP2_6q27 ### chr6 rmsk gene 169393894 169394448 . - . gene_id "HUERSP2_6q27"; transcript_id "HUERSP2_6q27"; locus "HUERSP2_6q27"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0064"; model_cov "492"; model_pct "15.9"; chr6 rmsk exon 169393894 169394448 1664 - . gene_id "HUERSP2_6q27"; transcript_id "HUERSP2_6q27"; locus "HUERSP2_6q27"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0064"; repClass "LTR"; repEnd "568"; repFamily "ERV1"; repLeft "76"; repStart "-2520"; ### MER101_6q27c ### chr6 rmsk gene 169438544 169440773 . + . gene_id "MER101_6q27c"; transcript_id "MER101_6q27c"; locus "MER101_6q27c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0199"; model_cov "2211"; model_pct "33.3"; chr6 rmsk exon 169438544 169440773 2916 + . gene_id "MER101_6q27c"; transcript_id "MER101_6q27c"; locus "MER101_6q27c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0199"; repClass "LTR"; repEnd "5328"; repFamily "ERV1"; repLeft "-1311"; repStart "3117"; ### ERVLE_6q27c ### chr6 rmsk gene 169499453 169500497 . + . gene_id "ERVLE_6q27c"; transcript_id "ERVLE_6q27c"; locus "ERVLE_6q27c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1768"; model_cov "820"; model_pct "14.5"; chr6 rmsk exon 169499453 169499754 306 + . gene_id "ERVLE_6q27c"; transcript_id "ERVLE_6q27c"; locus "ERVLE_6q27c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1768"; repClass "LTR"; repEnd "1413"; repFamily "ERVL"; repLeft "-4254"; repStart "1100"; chr6 rmsk exon 169500009 169500497 840 + . gene_id "ERVLE_6q27c"; transcript_id "ERVLE_6q27c"; locus "ERVLE_6q27c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1768"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "-3087"; repStart "2073"; ### ERVLE_6q27d ### chr6 rmsk gene 169783790 169786516 . - . gene_id "ERVLE_6q27d"; transcript_id "ERVLE_6q27d"; locus "ERVLE_6q27d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1769"; model_cov "2696"; model_pct "47.6"; chr6 rmsk exon 169783790 169784698 1718 - . gene_id "ERVLE_6q27d"; transcript_id "ERVLE_6q27d"; locus "ERVLE_6q27d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1769"; repClass "LTR"; repEnd "5584"; repFamily "ERVL"; repLeft "4621"; repStart "-83"; chr6 rmsk exon 169785001 169785484 582 - . gene_id "ERVLE_6q27d"; transcript_id "ERVLE_6q27d"; locus "ERVLE_6q27d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1769"; repClass "LTR"; repEnd "4179"; repFamily "ERVL"; repLeft "3407"; repStart "-1488"; chr6 rmsk exon 169785538 169785799 435 - . gene_id "ERVLE_6q27d"; transcript_id "ERVLE_6q27d"; locus "ERVLE_6q27d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1769"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "3176"; repStart "-2241"; chr6 rmsk exon 169785822 169786516 1027 - . gene_id "ERVLE_6q27d"; transcript_id "ERVLE_6q27d"; locus "ERVLE_6q27d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1769"; repClass "LTR"; repEnd "3099"; repFamily "ERVL"; repLeft "2388"; repStart "-2568"; ### MER4_6q27a ### chr6 rmsk gene 169819169 169822076 . + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0362"; model_cov "1838"; model_pct "27.9"; chr6 rmsk exon 169819169 169819614 3062 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0362"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr6 rmsk exon 169819620 169820208 2989 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0362"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "-5982"; repStart "3"; chr6 rmsk exon 169820265 169820327 2989 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0362"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-5913"; repStart "617"; chr6 rmsk exon 169820316 169820419 349 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0362"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-5757"; repStart "751"; chr6 rmsk exon 169820581 169821618 6329 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0362"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5529"; chr6 rmsk exon 169821630 169822076 3274 + . gene_id "MER4_6q27a"; transcript_id "MER4_6q27a"; locus "MER4_6q27a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0362"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_6q27e ### chr6 rmsk gene 169953280 169954998 . + . gene_id "ERVLB4_6q27e"; transcript_id "ERVLB4_6q27e"; locus "ERVLB4_6q27e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0767"; model_cov "906"; model_pct "15.9"; chr6 rmsk exon 169953280 169953361 358 + . gene_id "ERVLB4_6q27e"; transcript_id "ERVLB4_6q27e"; locus "ERVLB4_6q27e"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0767"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "-595"; repStart "14"; chr6 rmsk exon 169953362 169953427 375 + . gene_id "ERVLB4_6q27e"; transcript_id "ERVLB4_6q27e"; locus "ERVLB4_6q27e"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0767"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-305"; repStart "320"; chr6 rmsk exon 169953458 169954304 3116 + . gene_id "ERVLB4_6q27e"; transcript_id "ERVLB4_6q27e"; locus "ERVLB4_6q27e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0767"; repClass "LTR"; repEnd "5680"; repFamily "ERVL"; repLeft "-34"; repStart "4774"; chr6 rmsk exon 169954339 169954998 3405 + . gene_id "ERVLB4_6q27e"; transcript_id "ERVLB4_6q27e"; locus "ERVLB4_6q27e"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0767"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER101_6q27d ### chr6 rmsk gene 170426568 170430754 . - . gene_id "MER101_6q27d"; transcript_id "MER101_6q27d"; locus "MER101_6q27d"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0200"; model_cov "4148"; model_pct "62.5"; chr6 rmsk exon 170426568 170427006 2262 - . gene_id "MER101_6q27d"; transcript_id "MER101_6q27d"; locus "MER101_6q27d"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0200"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 170427007 170427472 2072 - . gene_id "MER101_6q27d"; transcript_id "MER101_6q27d"; locus "MER101_6q27d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0200"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6165"; repStart "0"; chr6 rmsk exon 170427500 170430357 6362 - . gene_id "MER101_6q27d"; transcript_id "MER101_6q27d"; locus "MER101_6q27d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0200"; repClass "LTR"; repEnd "5370"; repFamily "ERV1"; repLeft "2028"; repStart "-1269"; chr6 rmsk exon 170430364 170430754 876 - . gene_id "MER101_6q27d"; transcript_id "MER101_6q27d"; locus "MER101_6q27d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0200"; repClass "LTR"; repEnd "2817"; repFamily "ERV1"; repLeft "2485"; repStart "-3822"; ### LTR57_6q27 ### chr6 rmsk gene 170430663 170431676 . - . gene_id "LTR57_6q27"; transcript_id "LTR57_6q27"; locus "LTR57_6q27"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0081"; model_cov "1023"; model_pct "19.1"; chr6 rmsk exon 170430663 170431676 3386 - . gene_id "LTR57_6q27"; transcript_id "LTR57_6q27"; locus "LTR57_6q27"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0081"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "557"; repStart "-3763"; ### MER101_6q27e ### chr6 rmsk gene 170431046 170433166 . - . gene_id "MER101_6q27e"; transcript_id "MER101_6q27e"; locus "MER101_6q27e"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0201"; model_cov "1994"; model_pct "30.0"; chr6 rmsk exon 170431046 170432973 6002 - . gene_id "MER101_6q27e"; transcript_id "MER101_6q27e"; locus "MER101_6q27e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0201"; repClass "LTR"; repEnd "3845"; repFamily "ERV1"; repLeft "1851"; repStart "-2794"; chr6 rmsk exon 170433058 170433166 743 - . gene_id "MER101_6q27e"; transcript_id "MER101_6q27e"; locus "MER101_6q27e"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0201"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "338"; repStart "0"; ### MER4_6q27b ### chr6 rmsk gene 170587441 170589068 . - . gene_id "MER4_6q27b"; transcript_id "MER4_6q27b"; locus "MER4_6q27b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0363"; model_cov "987"; model_pct "15.0"; chr6 rmsk exon 170587441 170587900 3026 - . gene_id "MER4_6q27b"; transcript_id "MER4_6q27b"; locus "MER4_6q27b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0363"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6 rmsk exon 170587909 170589068 5206 - . gene_id "MER4_6q27b"; transcript_id "MER4_6q27b"; locus "MER4_6q27b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0363"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5609"; repStart "-2"; ### HML3_6q27b ### chr6 rmsk gene 170593081 170596715 . - . gene_id "HML3_6q27b"; transcript_id "HML3_6q27b"; locus "HML3_6q27b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0115"; model_cov "3158"; model_pct "52.4"; chr6 rmsk exon 170593081 170593589 4159 - . gene_id "HML3_6q27b"; transcript_id "HML3_6q27b"; locus "HML3_6q27b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0115"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr6 rmsk exon 170593591 170594829 9541 - . gene_id "HML3_6q27b"; transcript_id "HML3_6q27b"; locus "HML3_6q27b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0115"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4774"; repStart "0"; chr6 rmsk exon 170594831 170595432 4511 - . gene_id "HML3_6q27b"; transcript_id "HML3_6q27b"; locus "HML3_6q27b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0115"; repClass "LTR"; repEnd "4354"; repFamily "ERVK"; repLeft "3723"; repStart "-1667"; chr6 rmsk exon 170595433 170596715 9981 - . gene_id "HML3_6q27b"; transcript_id "HML3_6q27b"; locus "HML3_6q27b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0115"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1518"; repStart "-3223"; ### ERVLE_7p22.3 ### chr7 rmsk gene 67231 68014 . - . gene_id "ERVLE_7p22.3"; transcript_id "ERVLE_7p22.3"; locus "ERVLE_7p22.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1771"; model_cov "839"; model_pct "14.8"; chr7 rmsk exon 67231 68014 3025 - . gene_id "ERVLE_7p22.3"; transcript_id "ERVLE_7p22.3"; locus "ERVLE_7p22.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1771"; repClass "LTR"; repEnd "2456"; repFamily "ERVL"; repLeft "1617"; repStart "-3211"; ### ERV316A3_7p22.3 ### chr7 rmsk gene 1174984 1176956 . - . gene_id "ERV316A3_7p22.3"; transcript_id "ERV316A3_7p22.3"; locus "ERV316A3_7p22.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1356"; model_cov "1293"; model_pct "24.7"; chr7 rmsk exon 1174984 1175264 830 - . gene_id "ERV316A3_7p22.3"; transcript_id "ERV316A3_7p22.3"; locus "ERV316A3_7p22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1356"; repClass "LTR"; repEnd "3684"; repFamily "ERVL"; repLeft "3397"; repStart "-1542"; chr7 rmsk exon 1175828 1176361 553 - . gene_id "ERV316A3_7p22.3"; transcript_id "ERV316A3_7p22.3"; locus "ERV316A3_7p22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1356"; repClass "LTR"; repEnd "2862"; repFamily "ERVL"; repLeft "2291"; repStart "-2364"; chr7 rmsk exon 1176516 1176956 832 - . gene_id "ERV316A3_7p22.3"; transcript_id "ERV316A3_7p22.3"; locus "ERV316A3_7p22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1356"; repClass "LTR"; repEnd "1675"; repFamily "ERVL"; repLeft "1240"; repStart "-3551"; ### ERVL_7p22.3 ### chr7 rmsk gene 1757630 1759683 . - . gene_id "ERVL_7p22.3"; transcript_id "ERVL_7p22.3"; locus "ERVL_7p22.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0199"; model_cov "1496"; model_pct "26.0"; chr7 rmsk exon 1757630 1758119 582 - . gene_id "ERVL_7p22.3"; transcript_id "ERVL_7p22.3"; locus "ERVL_7p22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0199"; repClass "LTR"; repEnd "4923"; repFamily "ERVL"; repLeft "4430"; repStart "-834"; chr7 rmsk exon 1758207 1758298 407 - . gene_id "ERVL_7p22.3"; transcript_id "ERVL_7p22.3"; locus "ERVL_7p22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0199"; repClass "LTR"; repEnd "4255"; repFamily "ERVL"; repLeft "4163"; repStart "-1502"; chr7 rmsk exon 1758652 1758917 605 - . gene_id "ERVL_7p22.3"; transcript_id "ERVL_7p22.3"; locus "ERVL_7p22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0199"; repClass "LTR"; repEnd "4143"; repFamily "ERVL"; repLeft "3872"; repStart "-1614"; chr7 rmsk exon 1759149 1759683 567 - . gene_id "ERVL_7p22.3"; transcript_id "ERVL_7p22.3"; locus "ERVL_7p22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0199"; repClass "LTR"; repEnd "3442"; repFamily "ERVL"; repLeft "2802"; repStart "-2315"; ### ERVLE_7p22.2a ### chr7 rmsk gene 3626556 3628687 . - . gene_id "ERVLE_7p22.2a"; transcript_id "ERVLE_7p22.2a"; locus "ERVLE_7p22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1772"; model_cov "1063"; model_pct "18.8"; chr7 rmsk exon 3626556 3626878 495 - . gene_id "ERVLE_7p22.2a"; transcript_id "ERVLE_7p22.2a"; locus "ERVLE_7p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1772"; repClass "LTR"; repEnd "5107"; repFamily "ERVL"; repLeft "4748"; repStart "-560"; chr7 rmsk exon 3627252 3627714 869 - . gene_id "ERVLE_7p22.2a"; transcript_id "ERVLE_7p22.2a"; locus "ERVLE_7p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1772"; repClass "LTR"; repEnd "4535"; repFamily "ERVL"; repLeft "4059"; repStart "-1132"; chr7 rmsk exon 3628462 3628687 498 - . gene_id "ERVLE_7p22.2a"; transcript_id "ERVLE_7p22.2a"; locus "ERVLE_7p22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1772"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "3062"; repStart "-2377"; ### ERVLE_7p22.2b ### chr7 rmsk gene 3841185 3842728 . + . gene_id "ERVLE_7p22.2b"; transcript_id "ERVLE_7p22.2b"; locus "ERVLE_7p22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1773"; model_cov "1137"; model_pct "20.1"; chr7 rmsk exon 3841185 3841557 542 + . gene_id "ERVLE_7p22.2b"; transcript_id "ERVLE_7p22.2b"; locus "ERVLE_7p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1773"; repClass "LTR"; repEnd "3632"; repFamily "ERVL"; repLeft "-2035"; repStart "3285"; chr7 rmsk exon 3841861 3842210 599 + . gene_id "ERVLE_7p22.2b"; transcript_id "ERVLE_7p22.2b"; locus "ERVLE_7p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1773"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "-1953"; repStart "3192"; chr7 rmsk exon 3842483 3842728 271 + . gene_id "ERVLE_7p22.2b"; transcript_id "ERVLE_7p22.2b"; locus "ERVLE_7p22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1773"; repClass "LTR"; repEnd "5188"; repFamily "ERVL"; repLeft "-479"; repStart "4920"; ### HERVL_7p22.2 ### chr7 rmsk gene 4192955 4194878 . - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0669"; model_cov "697"; model_pct "12.3"; chr7 rmsk exon 4192955 4193007 284 - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; repName "MLT2B1"; geneRegion "ltr"; locid "HERVL-int_0669"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "464"; repStart "0"; chr7 rmsk exon 4193384 4193453 386 - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0669"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "335"; repStart "-40"; chr7 rmsk exon 4193454 4194151 5167 - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0669"; repClass "LTR"; repEnd "698"; repFamily "ERVL"; repLeft "1"; repStart "-4956"; chr7 rmsk exon 4194152 4194222 317 - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0669"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr7 rmsk exon 4194470 4194878 2441 - . gene_id "HERVL_7p22.2"; transcript_id "HERVL_7p22.2"; locus "HERVL_7p22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0669"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### HML2_7p22.1 ### chr7 rmsk gene 4582426 4600400 . - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; category "tandem*"; intModel "HERVK-int"; locid "HERVK-int_0055"; model_cov "7440"; model_pct "98.7"; chr7 rmsk exon 4582426 4583393 8941 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 4583489 4590929 68784 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr7 rmsk exon 4590930 4591897 8936 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 4591993 4599432 68780 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr7 rmsk exon 4599433 4600400 8980 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_7p22.1 ### chr7 rmsk gene 5020879 5028716 . - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0093"; model_cov "6893"; model_pct "100.0"; chr7 rmsk exon 5020879 5021340 3619 - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0093"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 5021341 5022259 43610 - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0093"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5983"; repStart "0"; chr7 rmsk exon 5022570 5027094 43610 - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0093"; repClass "LTR"; repEnd "5982"; repFamily "ERV1"; repLeft "1423"; repStart "-914"; chr7 rmsk exon 5027170 5028260 43610 - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0093"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "1"; repStart "-5474"; chr7 rmsk exon 5028261 5028716 3509 - . gene_id "HARLEQUIN_7p22.1"; transcript_id "HARLEQUIN_7p22.1"; locus "HARLEQUIN_7p22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0093"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLE_7p22.1a ### chr7 rmsk gene 5649746 5650316 . + . gene_id "ERVLE_7p22.1a"; transcript_id "ERVLE_7p22.1a"; locus "ERVLE_7p22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1775"; model_cov "686"; model_pct "12.1"; chr7 rmsk exon 5649746 5650316 1019 + . gene_id "ERVLE_7p22.1a"; transcript_id "ERVLE_7p22.1a"; locus "ERVLE_7p22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1775"; repClass "LTR"; repEnd "3009"; repFamily "ERVL"; repLeft "-2658"; repStart "2323"; ### ERVLB4_7p22.1 ### chr7 rmsk gene 6070143 6073177 . - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0768"; model_cov "980"; model_pct "17.2"; chr7 rmsk exon 6070143 6070215 441 - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0768"; repClass "LTR"; repEnd "-67"; repFamily "ERVL"; repLeft "-141"; repStart "-481"; chr7 rmsk exon 6070524 6070565 4940 - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0768"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5672"; repStart "0"; chr7 rmsk exon 6070880 6071626 4940 - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0768"; repClass "LTR"; repEnd "5671"; repFamily "ERVL"; repLeft "4891"; repStart "-43"; chr7 rmsk exon 6072694 6072790 4940 - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0768"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "4799"; repStart "-824"; chr7 rmsk exon 6073101 6073177 4940 - . gene_id "ERVLB4_7p22.1"; transcript_id "ERVLB4_7p22.1"; locus "ERVLB4_7p22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0768"; repClass "LTR"; repEnd "4798"; repFamily "ERVL"; repLeft "4731"; repStart "-916"; ### HERVE_7p22.1a ### chr7 rmsk gene 6842371 6846454 . - . gene_id "HERVE_7p22.1a"; transcript_id "HERVE_7p22.1a"; locus "HERVE_7p22.1a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0055"; model_cov "4057"; model_pct "51.9"; chr7 rmsk exon 6842371 6846454 27676 - . gene_id "HERVE_7p22.1a"; transcript_id "HERVE_7p22.1a"; locus "HERVE_7p22.1a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0055"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVE_7p22.1b ### chr7 rmsk gene 6871228 6875273 . - . gene_id "HERVE_7p22.1b"; transcript_id "HERVE_7p22.1b"; locus "HERVE_7p22.1b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0056"; model_cov "4057"; model_pct "51.9"; chr7 rmsk exon 6871228 6875273 27360 - . gene_id "HERVE_7p22.1b"; transcript_id "HERVE_7p22.1b"; locus "HERVE_7p22.1b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0056"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVH_7p22.1a ### chr7 rmsk gene 6903791 6908992 . + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0618"; model_cov "4416"; model_pct "57.3"; chr7 rmsk exon 6903791 6904200 2495 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 6904203 6907181 19142 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr7 rmsk exon 6907176 6907323 856 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 6907314 6907816 3432 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr7 rmsk exon 6907816 6907987 891 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4975"; chr7 rmsk exon 6907991 6908205 1294 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5602"; chr7 rmsk exon 6908206 6908582 2270 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr7 rmsk exon 6908584 6908992 2547 + . gene_id "HERVH_7p22.1a"; transcript_id "HERVH_7p22.1a"; locus "HERVH_7p22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0618"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HERVH_7p22.1b ### chr7 rmsk gene 6948201 6950408 . - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0619"; model_cov "1821"; model_pct "23.6"; chr7 rmsk exon 6948201 6948598 2556 - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0619"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr7 rmsk exon 6948600 6948976 2342 - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0619"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 6948977 6949187 1367 - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0619"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 6949189 6949851 4388 - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0619"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 6949854 6950408 4184 - . gene_id "HERVH_7p22.1b"; transcript_id "HERVH_7p22.1b"; locus "HERVH_7p22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0619"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3441"; repStart "-3720"; ### HERVE_7p22.1c ### chr7 rmsk gene 6950409 6958745 . - . gene_id "HERVE_7p22.1c"; transcript_id "HERVE_7p22.1c"; locus "HERVE_7p22.1c"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0057"; model_cov "7809"; model_pct "99.9"; chr7 rmsk exon 6950409 6950904 3684 - . gene_id "HERVE_7p22.1c"; transcript_id "HERVE_7p22.1c"; locus "HERVE_7p22.1c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0057"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr7 rmsk exon 6950905 6958745 63417 - . gene_id "HERVE_7p22.1c"; transcript_id "HERVE_7p22.1c"; locus "HERVE_7p22.1c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0057"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "3"; repStart "-1"; ### HERVH_7p22.1c ### chr7 rmsk gene 6958746 6962263 . - . gene_id "HERVH_7p22.1c"; transcript_id "HERVH_7p22.1c"; locus "HERVH_7p22.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0620"; model_cov "3296"; model_pct "42.7"; chr7 rmsk exon 6958746 6959050 2044 - . gene_id "HERVH_7p22.1c"; transcript_id "HERVH_7p22.1c"; locus "HERVH_7p22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0620"; repClass "LTR"; repEnd "3445"; repFamily "ERV1"; repLeft "3140"; repStart "-4268"; chr7 rmsk exon 6959037 6961910 16184 - . gene_id "HERVH_7p22.1c"; transcript_id "HERVH_7p22.1c"; locus "HERVH_7p22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0620"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr7 rmsk exon 6961913 6962263 1989 - . gene_id "HERVH_7p22.1c"; transcript_id "HERVH_7p22.1c"; locus "HERVH_7p22.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0620"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_7p22.1 ### chr7 rmsk gene 6988359 6995705 . - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0019"; model_cov "6463"; model_pct "72.0"; chr7 rmsk exon 6988359 6988915 4301 - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0019"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 6988916 6989232 2320 - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0019"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr7 rmsk exon 6989230 6992060 14258 - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0019"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr7 rmsk exon 6992070 6995253 22290 - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0019"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr7 rmsk exon 6995256 6995705 3294 - . gene_id "HERVS71_7p22.1"; transcript_id "HERVS71_7p22.1"; locus "HERVS71_7p22.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0019"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "110"; repStart "0"; ### ERVLE_7p22.1b ### chr7 rmsk gene 7044269 7045357 . + . gene_id "ERVLE_7p22.1b"; transcript_id "ERVLE_7p22.1b"; locus "ERVLE_7p22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1777"; model_cov "592"; model_pct "10.4"; chr7 rmsk exon 7044269 7044565 724 + . gene_id "ERVLE_7p22.1b"; transcript_id "ERVLE_7p22.1b"; locus "ERVLE_7p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1777"; repClass "LTR"; repEnd "1458"; repFamily "ERVL"; repLeft "-4209"; repStart "1129"; chr7 rmsk exon 7044749 7044817 441 + . gene_id "ERVLE_7p22.1b"; transcript_id "ERVLE_7p22.1b"; locus "ERVLE_7p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1777"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-4087"; repStart "1520"; chr7 rmsk exon 7045176 7045357 441 + . gene_id "ERVLE_7p22.1b"; transcript_id "ERVLE_7p22.1b"; locus "ERVLE_7p22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1777"; repClass "LTR"; repEnd "1784"; repFamily "ERVL"; repLeft "-3883"; repStart "1581"; ### MER4_7p22.1 ### chr7 rmsk gene 7104905 7110650 . + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0366"; model_cov "4793"; model_pct "72.6"; chr7 rmsk exon 7104905 7105353 2988 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0366"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 7105357 7105920 2501 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5989"; repStart "1"; chr7 rmsk exon 7105899 7106239 1287 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "1285"; repFamily "ERV1"; repLeft "-5313"; repStart "1005"; chr7 rmsk exon 7106238 7106944 4284 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1771"; chr7 rmsk exon 7107194 7107686 2350 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "3246"; repFamily "ERV1"; repLeft "-3352"; repStart "2737"; chr7 rmsk exon 7107684 7109396 13297 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "5766"; repFamily "ERV1"; repLeft "-832"; repStart "3924"; chr7 rmsk exon 7109469 7110239 13297 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0366"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "5767"; chr7 rmsk exon 7110247 7110650 2430 + . gene_id "MER4_7p22.1"; transcript_id "MER4_7p22.1"; locus "MER4_7p22.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0366"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3B_7p21.3 ### chr7 rmsk gene 7210436 7217353 . - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0070"; model_cov "5621"; model_pct "75.8"; chr7 rmsk exon 7210436 7210963 3318 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "1"; repStart "-84"; chr7 rmsk exon 7210965 7212527 10641 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "5775"; repStart "-7"; chr7 rmsk exon 7212924 7213883 4767 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "5780"; repFamily "ERV1"; repLeft "4719"; repStart "-1638"; chr7 rmsk exon 7213883 7214649 5612 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "3099"; repStart "-3544"; chr7 rmsk exon 7215068 7216893 10089 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "747"; repStart "-4776"; chr7 rmsk exon 7216894 7217042 648 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "409"; repStart "-6861"; chr7 rmsk exon 7217038 7217142 349 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "107"; repFamily "ERV1"; repLeft "1"; repStart "-7311"; chr7 rmsk exon 7217143 7217353 1132 - . gene_id "HUERSP3B_7p21.3"; transcript_id "HUERSP3B_7p21.3"; locus "HUERSP3B_7p21.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0070"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "445"; repStart "0"; ### HERVL_7p21.3a ### chr7 rmsk gene 7721759 7728024 . + . gene_id "HERVL_7p21.3a"; transcript_id "HERVL_7p21.3a"; locus "HERVL_7p21.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0670"; model_cov "5270"; model_pct "93.2"; chr7 rmsk exon 7721759 7722256 2974 + . gene_id "HERVL_7p21.3a"; transcript_id "HERVL_7p21.3a"; locus "HERVL_7p21.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0670"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 7722257 7726231 31360 + . gene_id "HERVL_7p21.3a"; transcript_id "HERVL_7p21.3a"; locus "HERVL_7p21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0670"; repClass "LTR"; repEnd "4016"; repFamily "ERVL"; repLeft "-1638"; repStart "1"; chr7 rmsk exon 7726229 7727495 9309 + . gene_id "HERVL_7p21.3a"; transcript_id "HERVL_7p21.3a"; locus "HERVL_7p21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0670"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4399"; chr7 rmsk exon 7727496 7728024 2855 + . gene_id "HERVL_7p21.3a"; transcript_id "HERVL_7p21.3a"; locus "HERVL_7p21.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0670"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_7p21.3a ### chr7 rmsk gene 8282202 8284756 . + . gene_id "ERVLE_7p21.3a"; transcript_id "ERVLE_7p21.3a"; locus "ERVLE_7p21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1779"; model_cov "971"; model_pct "17.1"; chr7 rmsk exon 8282202 8283095 1065 + . gene_id "ERVLE_7p21.3a"; transcript_id "ERVLE_7p21.3a"; locus "ERVLE_7p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1779"; repClass "LTR"; repEnd "3785"; repFamily "ERVL"; repLeft "-1882"; repStart "2890"; chr7 rmsk exon 8284687 8284756 259 + . gene_id "ERVLE_7p21.3a"; transcript_id "ERVLE_7p21.3a"; locus "ERVLE_7p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1779"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "-753"; repStart "4838"; ### ERVLE_7p21.3b ### chr7 rmsk gene 8392647 8396155 . - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1780"; model_cov "1797"; model_pct "31.7"; chr7 rmsk exon 8392647 8393282 1329 - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1780"; repClass "LTR"; repEnd "2932"; repFamily "ERVL"; repLeft "2308"; repStart "-2735"; chr7 rmsk exon 8393451 8393529 281 - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1780"; repClass "LTR"; repEnd "2199"; repFamily "ERVL"; repLeft "2121"; repStart "-3468"; chr7 rmsk exon 8394759 8394865 255 - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1780"; repClass "LTR"; repEnd "1821"; repFamily "ERVL"; repLeft "1709"; repStart "-3846"; chr7 rmsk exon 8394937 8395402 829 - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1780"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "1112"; repStart "-4078"; chr7 rmsk exon 8395651 8396155 829 - . gene_id "ERVLE_7p21.3b"; transcript_id "ERVLE_7p21.3b"; locus "ERVLE_7p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1780"; repClass "LTR"; repEnd "1111"; repFamily "ERVL"; repLeft "605"; repStart "-4556"; ### ERVLE_7p21.3c ### chr7 rmsk gene 8703903 8706856 . + . gene_id "ERVLE_7p21.3c"; transcript_id "ERVLE_7p21.3c"; locus "ERVLE_7p21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1781"; model_cov "2795"; model_pct "49.3"; chr7 rmsk exon 8703903 8705093 2022 + . gene_id "ERVLE_7p21.3c"; transcript_id "ERVLE_7p21.3c"; locus "ERVLE_7p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1781"; repClass "LTR"; repEnd "1962"; repFamily "ERVL"; repLeft "-3705"; repStart "763"; chr7 rmsk exon 8705222 8705854 2019 + . gene_id "ERVLE_7p21.3c"; transcript_id "ERVLE_7p21.3c"; locus "ERVLE_7p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1781"; repClass "LTR"; repEnd "2624"; repFamily "ERVL"; repLeft "-3043"; repStart "1977"; chr7 rmsk exon 8705948 8706464 1205 + . gene_id "ERVLE_7p21.3c"; transcript_id "ERVLE_7p21.3c"; locus "ERVLE_7p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1781"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "-2102"; repStart "3005"; chr7 rmsk exon 8706472 8706856 1017 + . gene_id "ERVLE_7p21.3c"; transcript_id "ERVLE_7p21.3c"; locus "ERVLE_7p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1781"; repClass "LTR"; repEnd "4251"; repFamily "ERVL"; repLeft "-1416"; repStart "3862"; ### HML1_7p21.3 ### chr7 rmsk gene 9016704 9021146 . + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0048"; model_cov "1227"; model_pct "20.1"; chr7 rmsk exon 9016704 9016750 271 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-562"; repStart "1"; chr7 rmsk exon 9016739 9017105 1730 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; chr7 rmsk exon 9017106 9017445 1959 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "336"; repFamily "ERVK"; repLeft "-5760"; repStart "1"; chr7 rmsk exon 9019836 9020304 1690 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "-490"; repStart "5036"; chr7 rmsk exon 9020300 9020472 1345 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "5895"; repFamily "ERVK"; repLeft "-201"; repStart "5716"; chr7 rmsk exon 9020538 9020659 631 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5953"; chr7 rmsk exon 9020665 9020751 265 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "352"; repFamily "ERVK"; repLeft "-256"; repStart "266"; chr7 rmsk exon 9020800 9021146 1525 + . gene_id "HML1_7p21.3"; transcript_id "HML1_7p21.3"; locus "HML1_7p21.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0048"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "237"; ### HERVW_7p21.3 ### chr7 rmsk gene 9017444 9019835 . + . gene_id "HERVW_7p21.3"; transcript_id "HERVW_7p21.3"; locus "HERVW_7p21.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0157"; model_cov "2588"; model_pct "30.0"; chr7 rmsk exon 9017444 9018464 6716 + . gene_id "HERVW_7p21.3"; transcript_id "HERVW_7p21.3"; locus "HERVW_7p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0157"; repClass "LTR"; repEnd "2015"; repFamily "ERV1"; repLeft "-6611"; repStart "961"; chr7 rmsk exon 9018449 9019794 4866 + . gene_id "HERVW_7p21.3"; transcript_id "HERVW_7p21.3"; locus "HERVW_7p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0157"; repClass "LTR"; repEnd "7175"; repFamily "ERV1"; repLeft "-1451"; repStart "5682"; chr7 rmsk exon 9019794 9019835 296 + . gene_id "HERVW_7p21.3"; transcript_id "HERVW_7p21.3"; locus "HERVW_7p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0157"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "440"; ### ERVLB4_7p21.3a ### chr7 rmsk gene 9331778 9333350 . + . gene_id "ERVLB4_7p21.3a"; transcript_id "ERVLB4_7p21.3a"; locus "ERVLB4_7p21.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0770"; model_cov "758"; model_pct "13.3"; chr7 rmsk exon 9331778 9332119 1890 + . gene_id "ERVLB4_7p21.3a"; transcript_id "ERVLB4_7p21.3a"; locus "ERVLB4_7p21.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0770"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-81"; repStart "91"; chr7 rmsk exon 9332596 9333011 1810 + . gene_id "ERVLB4_7p21.3a"; transcript_id "ERVLB4_7p21.3a"; locus "ERVLB4_7p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0770"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-5308"; repStart "1"; chr7 rmsk exon 9333001 9333350 1888 + . gene_id "ERVLB4_7p21.3a"; transcript_id "ERVLB4_7p21.3a"; locus "ERVLB4_7p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0770"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "-2465"; repStart "2896"; ### HERVH_7p21.3a ### chr7 rmsk gene 9353405 9359207 . - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0621"; model_cov "4915"; model_pct "63.7"; chr7 rmsk exon 9353405 9353855 3447 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 9353856 9354235 2414 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 9354234 9354450 1325 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 9354452 9355111 4208 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr7 rmsk exon 9355115 9355619 3374 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 9355610 9355759 944 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 9355739 9358754 20058 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 9358757 9359207 3427 - . gene_id "HERVH_7p21.3a"; transcript_id "HERVH_7p21.3a"; locus "HERVH_7p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0621"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_7p21.3d ### chr7 rmsk gene 9359635 9361221 . + . gene_id "ERVLE_7p21.3d"; transcript_id "ERVLE_7p21.3d"; locus "ERVLE_7p21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1782"; model_cov "951"; model_pct "16.8"; chr7 rmsk exon 9359635 9360081 929 + . gene_id "ERVLE_7p21.3d"; transcript_id "ERVLE_7p21.3d"; locus "ERVLE_7p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1782"; repClass "LTR"; repEnd "2951"; repFamily "ERVL"; repLeft "-2716"; repStart "2494"; chr7 rmsk exon 9360743 9361221 924 + . gene_id "ERVLE_7p21.3d"; transcript_id "ERVLE_7p21.3d"; locus "ERVLE_7p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1782"; repClass "LTR"; repEnd "3529"; repFamily "ERVL"; repLeft "-2138"; repStart "3035"; ### HERVH_7p21.3b ### chr7 rmsk gene 9457702 9464218 . - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0622"; model_cov "5768"; model_pct "74.8"; chr7 rmsk exon 9457702 9458149 3467 - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0622"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 9458150 9458529 2520 - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0622"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 9458530 9458766 1256 - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0622"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr7 rmsk exon 9458747 9463766 19992 - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0622"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr7 rmsk exon 9463769 9464218 3480 - . gene_id "HERVH_7p21.3b"; transcript_id "HERVH_7p21.3b"; locus "HERVH_7p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0622"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_7p21.3a ### chr7 rmsk gene 9663579 9667603 . - . gene_id "MER61_7p21.3a"; transcript_id "MER61_7p21.3a"; locus "MER61_7p21.3a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0199"; model_cov "3562"; model_pct "68.3"; chr7 rmsk exon 9663579 9663905 1735 - . gene_id "MER61_7p21.3a"; transcript_id "MER61_7p21.3a"; locus "MER61_7p21.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0199"; repClass "LTR"; repEnd "337"; repFamily "ERV1"; repLeft "1"; repStart "-4"; chr7 rmsk exon 9663906 9667603 22942 - . gene_id "MER61_7p21.3a"; transcript_id "MER61_7p21.3a"; locus "MER61_7p21.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0199"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1655"; repStart "0"; ### ERV316A3_7p21.3a ### chr7 rmsk gene 9777561 9778097 . + . gene_id "ERV316A3_7p21.3a"; transcript_id "ERV316A3_7p21.3a"; locus "ERV316A3_7p21.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1357"; model_cov "556"; model_pct "10.6"; chr7 rmsk exon 9777561 9778097 1051 + . gene_id "ERV316A3_7p21.3a"; transcript_id "ERV316A3_7p21.3a"; locus "ERV316A3_7p21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1357"; repClass "LTR"; repEnd "1857"; repFamily "ERVL"; repLeft "-3369"; repStart "1301"; ### HERVL_7p21.3b ### chr7 rmsk gene 9816004 9819013 . - . gene_id "HERVL_7p21.3b"; transcript_id "HERVL_7p21.3b"; locus "HERVL_7p21.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0671"; model_cov "2499"; model_pct "44.2"; chr7 rmsk exon 9816004 9816043 3216 - . gene_id "HERVL_7p21.3b"; transcript_id "HERVL_7p21.3b"; locus "HERVL_7p21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0671"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr7 rmsk exon 9816120 9816513 3216 - . gene_id "HERVL_7p21.3b"; transcript_id "HERVL_7p21.3b"; locus "HERVL_7p21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0671"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "2"; repStart "-57"; chr7 rmsk exon 9816514 9817435 7054 - . gene_id "HERVL_7p21.3b"; transcript_id "HERVL_7p21.3b"; locus "HERVL_7p21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0671"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4736"; repStart "0"; chr7 rmsk exon 9817430 9819013 11429 - . gene_id "HERVL_7p21.3b"; transcript_id "HERVL_7p21.3b"; locus "HERVL_7p21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0671"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "31"; repStart "-4042"; ### ERV316A3_7p21.3b ### chr7 rmsk gene 9883126 9884418 . - . gene_id "ERV316A3_7p21.3b"; transcript_id "ERV316A3_7p21.3b"; locus "ERV316A3_7p21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1358"; model_cov "895"; model_pct "17.1"; chr7 rmsk exon 9883126 9883528 309 - . gene_id "ERV316A3_7p21.3b"; transcript_id "ERV316A3_7p21.3b"; locus "ERV316A3_7p21.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1358"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 9883538 9884418 2199 - . gene_id "ERV316A3_7p21.3b"; transcript_id "ERV316A3_7p21.3b"; locus "ERV316A3_7p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1358"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4281"; repStart "-50"; ### ERVLB4_7p21.3b ### chr7 rmsk gene 10029908 10035972 . - . gene_id "ERVLB4_7p21.3b"; transcript_id "ERVLB4_7p21.3b"; locus "ERVLB4_7p21.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0771"; model_cov "5712"; model_pct "100.0"; chr7 rmsk exon 10029908 10030160 708 - . gene_id "ERVLB4_7p21.3b"; transcript_id "ERVLB4_7p21.3b"; locus "ERVLB4_7p21.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0771"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "222"; repStart "-5"; chr7 rmsk exon 10030146 10030261 529 - . gene_id "ERVLB4_7p21.3b"; transcript_id "ERVLB4_7p21.3b"; locus "ERVLB4_7p21.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0771"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "6"; repStart "-394"; chr7 rmsk exon 10030262 10035924 31416 - . gene_id "ERVLB4_7p21.3b"; transcript_id "ERVLB4_7p21.3b"; locus "ERVLB4_7p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0771"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr7 rmsk exon 10035926 10035972 274 - . gene_id "ERVLB4_7p21.3b"; transcript_id "ERVLB4_7p21.3b"; locus "ERVLB4_7p21.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0771"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "474"; repStart "0"; ### LTR25_7p21.3 ### chr7 rmsk gene 10212004 10212984 . - . gene_id "LTR25_7p21.3"; transcript_id "LTR25_7p21.3"; locus "LTR25_7p21.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0059"; model_cov "975"; model_pct "13.6"; chr7 rmsk exon 10212004 10212984 5230 - . gene_id "LTR25_7p21.3"; transcript_id "LTR25_7p21.3"; locus "LTR25_7p21.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0059"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6212"; repStart "-1"; ### ERV316A3_7p21.3c ### chr7 rmsk gene 10302368 10303915 . - . gene_id "ERV316A3_7p21.3c"; transcript_id "ERV316A3_7p21.3c"; locus "ERV316A3_7p21.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1359"; model_cov "1572"; model_pct "30.1"; chr7 rmsk exon 10302368 10303915 3086 - . gene_id "ERV316A3_7p21.3c"; transcript_id "ERV316A3_7p21.3c"; locus "ERV316A3_7p21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1359"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "683"; repStart "-2971"; ### MER41_7p21.3a ### chr7 rmsk gene 10824498 10825924 . + . gene_id "MER41_7p21.3a"; transcript_id "MER41_7p21.3a"; locus "MER41_7p21.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0253"; model_cov "2108"; model_pct "35.5"; chr7 rmsk exon 10824498 10824872 2591 + . gene_id "MER41_7p21.3a"; transcript_id "MER41_7p21.3a"; locus "MER41_7p21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0253"; repClass "LTR"; repEnd "-1205"; repFamily "ERV1"; repLeft "-7151"; repStart "-1590"; chr7 rmsk exon 10824870 10825809 3387 + . gene_id "MER41_7p21.3a"; transcript_id "MER41_7p21.3a"; locus "MER41_7p21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0253"; repClass "LTR"; repEnd "1659"; repFamily "ERV1"; repLeft "-4287"; repStart "57"; chr7 rmsk exon 10825806 10825924 756 + . gene_id "MER41_7p21.3a"; transcript_id "MER41_7p21.3a"; locus "MER41_7p21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0253"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-4908"; repStart "917"; ### HARLEQUIN_7p21.3 ### chr7 rmsk gene 10924789 10928245 . + . gene_id "HARLEQUIN_7p21.3"; transcript_id "HARLEQUIN_7p21.3"; locus "HARLEQUIN_7p21.3"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0094"; model_cov "3517"; model_pct "51.0"; chr7 rmsk exon 10924789 10925704 18591 + . gene_id "HARLEQUIN_7p21.3"; transcript_id "HARLEQUIN_7p21.3"; locus "HARLEQUIN_7p21.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0094"; repClass "LTR"; repEnd "2459"; repFamily "ERV1"; repLeft "-4437"; repStart "1584"; chr7 rmsk exon 10926013 10928245 18591 + . gene_id "HARLEQUIN_7p21.3"; transcript_id "HARLEQUIN_7p21.3"; locus "HARLEQUIN_7p21.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0094"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "4254"; ### ERVLE_7p21.3e ### chr7 rmsk gene 10947966 10955535 . - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1783"; model_cov "3466"; model_pct "61.2"; chr7 rmsk exon 10947966 10948320 944 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "280"; repStart "0"; chr7 rmsk exon 10948329 10949044 2472 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "5054"; repFamily "ERVL"; repLeft "4259"; repStart "-613"; chr7 rmsk exon 10949037 10949689 2668 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "3976"; repFamily "ERVL"; repLeft "3314"; repStart "-1691"; chr7 rmsk exon 10949693 10949902 1070 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "2891"; repStart "-2565"; chr7 rmsk exon 10950909 10951053 612 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "2817"; repFamily "ERVL"; repLeft "2673"; repStart "-2850"; chr7 rmsk exon 10951385 10951648 1293 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "2674"; repFamily "ERVL"; repLeft "2396"; repStart "-2993"; chr7 rmsk exon 10951949 10952126 1293 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "2395"; repFamily "ERVL"; repLeft "2218"; repStart "-3272"; chr7 rmsk exon 10952123 10952382 804 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "1372"; repStart "-4038"; chr7 rmsk exon 10954034 10954272 1804 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "1176"; repFamily "ERVL"; repLeft "942"; repStart "-4491"; chr7 rmsk exon 10954551 10954891 1804 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "941"; repFamily "ERVL"; repLeft "550"; repStart "-4726"; chr7 rmsk exon 10955259 10955535 429 - . gene_id "ERVLE_7p21.3e"; transcript_id "ERVLE_7p21.3e"; locus "ERVLE_7p21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1783"; repClass "LTR"; repEnd "482"; repFamily "ERVL"; repLeft "165"; repStart "-5185"; ### MER61_7p21.3b ### chr7 rmsk gene 11193019 11197826 . + . gene_id "MER61_7p21.3b"; transcript_id "MER61_7p21.3b"; locus "MER61_7p21.3b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0200"; model_cov "4594"; model_pct "88.1"; chr7 rmsk exon 11193019 11193694 2447 + . gene_id "MER61_7p21.3b"; transcript_id "MER61_7p21.3b"; locus "MER61_7p21.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0200"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "1"; chr7 rmsk exon 11193736 11197496 24069 + . gene_id "MER61_7p21.3b"; transcript_id "MER61_7p21.3b"; locus "MER61_7p21.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0200"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1322"; chr7 rmsk exon 11197497 11197826 1765 + . gene_id "MER61_7p21.3b"; transcript_id "MER61_7p21.3b"; locus "MER61_7p21.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0200"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7p21.3f ### chr7 rmsk gene 11243769 11244896 . + . gene_id "ERVLE_7p21.3f"; transcript_id "ERVLE_7p21.3f"; locus "ERVLE_7p21.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1785"; model_cov "975"; model_pct "17.2"; chr7 rmsk exon 11243769 11244336 1560 + . gene_id "ERVLE_7p21.3f"; transcript_id "ERVLE_7p21.3f"; locus "ERVLE_7p21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1785"; repClass "LTR"; repEnd "2729"; repFamily "ERVL"; repLeft "-2938"; repStart "2134"; chr7 rmsk exon 11244604 11244896 458 + . gene_id "ERVLE_7p21.3f"; transcript_id "ERVLE_7p21.3f"; locus "ERVLE_7p21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1785"; repClass "LTR"; repEnd "3432"; repFamily "ERVL"; repLeft "-2235"; repStart "3052"; ### ERVL_7p21.3 ### chr7 rmsk gene 11246038 11246864 . + . gene_id "ERVL_7p21.3"; transcript_id "ERVL_7p21.3"; locus "ERVL_7p21.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0201"; model_cov "767"; model_pct "13.3"; chr7 rmsk exon 11246038 11246623 780 + . gene_id "ERVL_7p21.3"; transcript_id "ERVL_7p21.3"; locus "ERVL_7p21.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0201"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "-962"; repStart "4192"; chr7 rmsk exon 11246714 11246864 389 + . gene_id "ERVL_7p21.3"; transcript_id "ERVL_7p21.3"; locus "ERVL_7p21.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0201"; repClass "LTR"; repEnd "5079"; repFamily "ERVL"; repLeft "-678"; repStart "4915"; ### ERVLE_7p21.3g ### chr7 rmsk gene 11331408 11333641 . + . gene_id "ERVLE_7p21.3g"; transcript_id "ERVLE_7p21.3g"; locus "ERVLE_7p21.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1786"; model_cov "1431"; model_pct "25.3"; chr7 rmsk exon 11331408 11331659 468 + . gene_id "ERVLE_7p21.3g"; transcript_id "ERVLE_7p21.3g"; locus "ERVLE_7p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1786"; repClass "LTR"; repEnd "2942"; repFamily "ERVL"; repLeft "-2725"; repStart "2674"; chr7 rmsk exon 11332524 11333641 2060 + . gene_id "ERVLE_7p21.3g"; transcript_id "ERVLE_7p21.3g"; locus "ERVLE_7p21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1786"; repClass "LTR"; repEnd "4585"; repFamily "ERVL"; repLeft "-1082"; repStart "3422"; ### HERVL_7p21.3c ### chr7 rmsk gene 11593897 11600164 . + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0672"; model_cov "5374"; model_pct "95.0"; chr7 rmsk exon 11593897 11594340 3333 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 11594341 11598567 34106 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "4231"; repFamily "ERVL"; repLeft "-1423"; repStart "1"; chr7 rmsk exon 11598571 11598975 3596 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-631"; repStart "4592"; chr7 rmsk exon 11599012 11599119 3596 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "-514"; repStart "5024"; chr7 rmsk exon 11599133 11599730 4849 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "5055"; chr7 rmsk exon 11599733 11600164 3077 + . gene_id "HERVL_7p21.3c"; transcript_id "HERVL_7p21.3c"; locus "HERVL_7p21.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0672"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_7p21.3h ### chr7 rmsk gene 11612963 11614190 . + . gene_id "ERVLE_7p21.3h"; transcript_id "ERVLE_7p21.3h"; locus "ERVLE_7p21.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1787"; model_cov "1289"; model_pct "22.7"; chr7 rmsk exon 11612963 11613448 1099 + . gene_id "ERVLE_7p21.3h"; transcript_id "ERVLE_7p21.3h"; locus "ERVLE_7p21.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1787"; repClass "LTR"; repEnd "3094"; repFamily "ERVL"; repLeft "-2573"; repStart "2587"; chr7 rmsk exon 11613529 11614190 1282 + . gene_id "ERVLE_7p21.3h"; transcript_id "ERVLE_7p21.3h"; locus "ERVLE_7p21.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1787"; repClass "LTR"; repEnd "4724"; repFamily "ERVL"; repLeft "-943"; repStart "3942"; ### ERVLE_7p21.3i ### chr7 rmsk gene 11647236 11650355 . - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1788"; model_cov "2034"; model_pct "35.9"; chr7 rmsk exon 11647236 11647773 842 - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1788"; repClass "LTR"; repEnd "4812"; repFamily "ERVL"; repLeft "4252"; repStart "-855"; chr7 rmsk exon 11647898 11648087 387 - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1788"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "4140"; repStart "-1338"; chr7 rmsk exon 11648071 11648637 1353 - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1788"; repClass "LTR"; repEnd "3821"; repFamily "ERVL"; repLeft "3230"; repStart "-1846"; chr7 rmsk exon 11648668 11648872 1353 - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1788"; repClass "LTR"; repEnd "3229"; repFamily "ERVL"; repLeft "3047"; repStart "-2438"; chr7 rmsk exon 11649827 11650355 1544 - . gene_id "ERVLE_7p21.3i"; transcript_id "ERVLE_7p21.3i"; locus "ERVLE_7p21.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1788"; repClass "LTR"; repEnd "2725"; repFamily "ERVL"; repLeft "2213"; repStart "-2942"; ### HERVIP10F_7p21.3 ### chr7 rmsk gene 12066556 12075419 . + . gene_id "HERVIP10F_7p21.3"; transcript_id "HERVIP10F_7p21.3"; locus "HERVIP10F_7p21.3"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0048"; model_cov "7716"; model_pct "99.7"; chr7 rmsk exon 12066556 12067120 2211 + . gene_id "HERVIP10F_7p21.3"; transcript_id "HERVIP10F_7p21.3"; locus "HERVIP10F_7p21.3"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0048"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "-64"; repStart "1"; chr7 rmsk exon 12067139 12074892 47921 + . gene_id "HERVIP10F_7p21.3"; transcript_id "HERVIP10F_7p21.3"; locus "HERVIP10F_7p21.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0048"; repClass "LTR"; repEnd "7718"; repFamily "ERV1"; repLeft "-19"; repStart "2"; chr7 rmsk exon 12074923 12075419 2521 + . gene_id "HERVIP10F_7p21.3"; transcript_id "HERVIP10F_7p21.3"; locus "HERVIP10F_7p21.3"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0048"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "-64"; repStart "25"; ### HERVL18_7p21.3 ### chr7 rmsk gene 12090005 12093143 . + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0081"; model_cov "2005"; model_pct "33.2"; chr7 rmsk exon 12090005 12090565 3536 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "-13"; repStart "1"; chr7 rmsk exon 12090576 12090865 1448 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "-5751"; repStart "4"; chr7 rmsk exon 12090852 12091035 896 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "486"; chr7 rmsk exon 12091064 12091425 1117 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1388"; chr7 rmsk exon 12091425 12091651 714 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr7 rmsk exon 12091651 12092412 4431 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "3498"; repFamily "ERVL"; repLeft "-2549"; repStart "2720"; chr7 rmsk exon 12092578 12093143 3590 + . gene_id "HERVL18_7p21.3"; transcript_id "HERVL18_7p21.3"; locus "HERVL18_7p21.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0081"; repClass "LTR"; repEnd "600"; repFamily "ERVL"; repLeft "-14"; repStart "1"; ### ERVLB4_7p21.3c ### chr7 rmsk gene 12145322 12149095 . - . gene_id "ERVLB4_7p21.3c"; transcript_id "ERVLB4_7p21.3c"; locus "ERVLB4_7p21.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0773"; model_cov "3237"; model_pct "56.7"; chr7 rmsk exon 12145322 12148494 18523 - . gene_id "ERVLB4_7p21.3c"; transcript_id "ERVLB4_7p21.3c"; locus "ERVLB4_7p21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0773"; repClass "LTR"; repEnd "3238"; repFamily "ERVL"; repLeft "1"; repStart "-2476"; chr7 rmsk exon 12148495 12148554 2305 - . gene_id "ERVLB4_7p21.3c"; transcript_id "ERVLB4_7p21.3c"; locus "ERVLB4_7p21.3c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0773"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "509"; repStart "0"; chr7 rmsk exon 12148656 12149095 2305 - . gene_id "ERVLB4_7p21.3c"; transcript_id "ERVLB4_7p21.3c"; locus "ERVLB4_7p21.3c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0773"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "1"; repStart "-46"; ### ERVLE_7p21.3j ### chr7 rmsk gene 12282912 12283571 . - . gene_id "ERVLE_7p21.3j"; transcript_id "ERVLE_7p21.3j"; locus "ERVLE_7p21.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1790"; model_cov "652"; model_pct "11.5"; chr7 rmsk exon 12282912 12283571 1211 - . gene_id "ERVLE_7p21.3j"; transcript_id "ERVLE_7p21.3j"; locus "ERVLE_7p21.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1790"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "4581"; repStart "-434"; ### HERVFRD_7p21.3 ### chr7 rmsk gene 12302434 12304639 . + . gene_id "HERVFRD_7p21.3"; transcript_id "HERVFRD_7p21.3"; locus "HERVFRD_7p21.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0078"; model_cov "1134"; model_pct "15.7"; chr7 rmsk exon 12302434 12303136 4005 + . gene_id "HERVFRD_7p21.3"; transcript_id "HERVFRD_7p21.3"; locus "HERVFRD_7p21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0078"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr7 rmsk exon 12303143 12304217 3448 + . gene_id "HERVFRD_7p21.3"; transcript_id "HERVFRD_7p21.3"; locus "HERVFRD_7p21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0078"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-6056"; repStart "15"; chr7 rmsk exon 12304219 12304639 2416 + . gene_id "HERVFRD_7p21.3"; transcript_id "HERVFRD_7p21.3"; locus "HERVFRD_7p21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0078"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "285"; ### HERVFH21_7p21.3 ### chr7 rmsk gene 12588442 12595509 . - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0017"; model_cov "5878"; model_pct "90.0"; chr7 rmsk exon 12588442 12588873 997 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 12588874 12589215 2250 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "6184"; repStart "0"; chr7 rmsk exon 12589523 12589701 2250 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "6183"; repFamily "ERV1"; repLeft "6010"; repStart "-346"; chr7 rmsk exon 12589726 12593455 13737 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "5330"; repFamily "ERV1"; repLeft "1511"; repStart "-1199"; chr7 rmsk exon 12593526 12595108 9810 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "1543"; repFamily "ERV1"; repLeft "2"; repStart "-4986"; chr7 rmsk exon 12595111 12595509 1098 - . gene_id "HERVFH21_7p21.3"; transcript_id "HERVFH21_7p21.3"; locus "HERVFH21_7p21.3"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0017"; repClass "LTR"; repEnd "478"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HERVH_7p21.3c ### chr7 rmsk gene 12659788 12665594 . + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0623"; model_cov "4950"; model_pct "64.2"; chr7 rmsk exon 12659788 12660220 3471 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 12660221 12660627 1732 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr7 rmsk exon 12660762 12663554 15680 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "-4112"; repStart "801"; chr7 rmsk exon 12663546 12664338 3240 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "5788"; repFamily "ERV1"; repLeft "-1925"; repStart "4899"; chr7 rmsk exon 12664333 12664591 1512 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr7 rmsk exon 12664585 12665129 3183 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr7 rmsk exon 12665130 12665594 3748 + . gene_id "HERVH_7p21.3c"; transcript_id "HERVH_7p21.3c"; locus "HERVH_7p21.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0623"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_7p21.3b ### chr7 rmsk gene 13311008 13313126 . + . gene_id "MER41_7p21.3b"; transcript_id "MER41_7p21.3b"; locus "MER41_7p21.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0254"; model_cov "2706"; model_pct "45.5"; chr7 rmsk exon 13311008 13311911 4688 + . gene_id "MER41_7p21.3b"; transcript_id "MER41_7p21.3b"; locus "MER41_7p21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0254"; repClass "LTR"; repEnd "816"; repFamily "ERV1"; repLeft "-5130"; repStart "-959"; chr7 rmsk exon 13311900 13312688 3133 + . gene_id "MER41_7p21.3b"; transcript_id "MER41_7p21.3b"; locus "MER41_7p21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0254"; repClass "LTR"; repEnd "2273"; repFamily "ERV1"; repLeft "-3673"; repStart "1472"; chr7 rmsk exon 13312992 13313126 1300 + . gene_id "MER41_7p21.3b"; transcript_id "MER41_7p21.3b"; locus "MER41_7p21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0254"; repClass "LTR"; repEnd "2582"; repFamily "ERV1"; repLeft "-3364"; repStart "2452"; ### HERVL74_7p21.3 ### chr7 rmsk gene 13447501 13453388 . - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; category "prototype"; intModel "HERVL74-int"; locid "HERVL74-int_0038"; model_cov "2923"; model_pct "51.4"; chr7 rmsk exon 13447501 13447945 1990 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 13447957 13448588 3499 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "5679"; repFamily "ERVL"; repLeft "4930"; repStart "-6"; chr7 rmsk exon 13449375 13449831 3499 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "4929"; repFamily "ERVL"; repLeft "4491"; repStart "-756"; chr7 rmsk exon 13450448 13450834 3499 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "4490"; repFamily "ERVL"; repLeft "4122"; repStart "-1195"; chr7 rmsk exon 13451325 13451958 5984 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "4118"; repFamily "ERVL"; repLeft "3483"; repStart "-1567"; chr7 rmsk exon 13452323 13453029 5984 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "3482"; repFamily "ERVL"; repLeft "2749"; repStart "-2203"; chr7 rmsk exon 13453030 13453388 1850 - . gene_id "HERVL74_7p21.3"; transcript_id "HERVL74_7p21.3"; locus "HERVL74_7p21.3"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0038"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "3"; repStart "-71"; ### ERVLB4_7p21.3d ### chr7 rmsk gene 13626871 13628906 . - . gene_id "ERVLB4_7p21.3d"; transcript_id "ERVLB4_7p21.3d"; locus "ERVLB4_7p21.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0774"; model_cov "1434"; model_pct "25.1"; chr7 rmsk exon 13626871 13626939 1970 - . gene_id "ERVLB4_7p21.3d"; transcript_id "ERVLB4_7p21.3d"; locus "ERVLB4_7p21.3d"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0774"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "491"; repStart "-4"; chr7 rmsk exon 13626977 13627500 2559 - . gene_id "ERVLB4_7p21.3d"; transcript_id "ERVLB4_7p21.3d"; locus "ERVLB4_7p21.3d"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0774"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "1"; repStart "-20"; chr7 rmsk exon 13627501 13628906 7713 - . gene_id "ERVLB4_7p21.3d"; transcript_id "ERVLB4_7p21.3d"; locus "ERVLB4_7p21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0774"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4280"; repStart "0"; ### ERV316A3_7p21.2a ### chr7 rmsk gene 14309582 14310850 . + . gene_id "ERV316A3_7p21.2a"; transcript_id "ERV316A3_7p21.2a"; locus "ERV316A3_7p21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1360"; model_cov "1242"; model_pct "23.8"; chr7 rmsk exon 14309582 14310850 1924 + . gene_id "ERV316A3_7p21.2a"; transcript_id "ERV316A3_7p21.2a"; locus "ERV316A3_7p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1360"; repClass "LTR"; repEnd "1823"; repFamily "ERVL"; repLeft "-3403"; repStart "581"; ### ERV316A3_7p21.2b ### chr7 rmsk gene 14311153 14312262 . + . gene_id "ERV316A3_7p21.2b"; transcript_id "ERV316A3_7p21.2b"; locus "ERV316A3_7p21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1361"; model_cov "706"; model_pct "13.5"; chr7 rmsk exon 14311153 14311376 1924 + . gene_id "ERV316A3_7p21.2b"; transcript_id "ERV316A3_7p21.2b"; locus "ERV316A3_7p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1361"; repClass "LTR"; repEnd "1682"; repFamily "ERVL"; repLeft "-3544"; repStart "1383"; chr7 rmsk exon 14311855 14312262 880 + . gene_id "ERV316A3_7p21.2b"; transcript_id "ERV316A3_7p21.2b"; locus "ERV316A3_7p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1361"; repClass "LTR"; repEnd "2959"; repFamily "ERVL"; repLeft "-2267"; repStart "2552"; ### ERV316A3_7p21.2c ### chr7 rmsk gene 14319922 14320791 . - . gene_id "ERV316A3_7p21.2c"; transcript_id "ERV316A3_7p21.2c"; locus "ERV316A3_7p21.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1363"; model_cov "794"; model_pct "15.2"; chr7 rmsk exon 14319922 14320512 677 - . gene_id "ERV316A3_7p21.2c"; transcript_id "ERV316A3_7p21.2c"; locus "ERV316A3_7p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1363"; repClass "LTR"; repEnd "3636"; repFamily "ERVL"; repLeft "3006"; repStart "-1590"; chr7 rmsk exon 14320635 14320791 333 - . gene_id "ERV316A3_7p21.2c"; transcript_id "ERV316A3_7p21.2c"; locus "ERV316A3_7p21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1363"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2818"; repStart "-2244"; ### MER41_7p21.2 ### chr7 rmsk gene 14740089 14745423 . + . gene_id "MER41_7p21.2"; transcript_id "MER41_7p21.2"; locus "MER41_7p21.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0255"; model_cov "5033"; model_pct "84.6"; chr7 rmsk exon 14740089 14740276 971 + . gene_id "MER41_7p21.2"; transcript_id "MER41_7p21.2"; locus "MER41_7p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0255"; repClass "LTR"; repEnd "-402"; repFamily "ERV1"; repLeft "-6348"; repStart "-491"; chr7 rmsk exon 14740353 14745423 13462 + . gene_id "MER41_7p21.2"; transcript_id "MER41_7p21.2"; locus "MER41_7p21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0255"; repClass "LTR"; repEnd "5920"; repFamily "ERV1"; repLeft "-26"; repStart "976"; ### ERVLB4_7p21.2a ### chr7 rmsk gene 14793726 14800261 . + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0775"; model_cov "3320"; model_pct "58.1"; chr7 rmsk exon 14793726 14794178 1622 + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0775"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 14794179 14795839 9855 + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0775"; repClass "LTR"; repEnd "1660"; repFamily "ERVL"; repLeft "-4054"; repStart "1"; chr7 rmsk exon 14797163 14797390 9855 + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0775"; repClass "LTR"; repEnd "1902"; repFamily "ERVL"; repLeft "-3812"; repStart "1661"; chr7 rmsk exon 14798594 14799915 7348 + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0775"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "-2448"; repStart "1899"; chr7 rmsk exon 14800216 14800261 511 + . gene_id "ERVLB4_7p21.2a"; transcript_id "ERVLB4_7p21.2a"; locus "ERVLB4_7p21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0775"; repClass "LTR"; repEnd "3320"; repFamily "ERVL"; repLeft "-2394"; repStart "3267"; ### ERVL_7p21.2a ### chr7 rmsk gene 14800645 14801850 . + . gene_id "ERVL_7p21.2a"; transcript_id "ERVL_7p21.2a"; locus "ERVL_7p21.2a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0203"; model_cov "775"; model_pct "13.5"; chr7 rmsk exon 14800645 14800797 929 + . gene_id "ERVL_7p21.2a"; transcript_id "ERVL_7p21.2a"; locus "ERVL_7p21.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0203"; repClass "LTR"; repEnd "5039"; repFamily "ERVL"; repLeft "-718"; repStart "4879"; chr7 rmsk exon 14800796 14801369 3114 + . gene_id "ERVL_7p21.2a"; transcript_id "ERVL_7p21.2a"; locus "ERVL_7p21.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0203"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "5141"; chr7 rmsk exon 14801373 14801850 1713 + . gene_id "ERVL_7p21.2a"; transcript_id "ERVL_7p21.2a"; locus "ERVL_7p21.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0203"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-39"; repStart "-32"; ### HERVL74_7p21.2a ### chr7 rmsk gene 14979662 14986900 . - . gene_id "HERVL74_7p21.2a"; transcript_id "HERVL74_7p21.2a"; locus "HERVL74_7p21.2a"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0040"; model_cov "3966"; model_pct "69.8"; chr7 rmsk exon 14979662 14980038 1122 - . gene_id "HERVL74_7p21.2a"; transcript_id "HERVL74_7p21.2a"; locus "HERVL74_7p21.2a"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0040"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "16"; repStart "0"; chr7 rmsk exon 14980374 14982308 9699 - . gene_id "HERVL74_7p21.2a"; transcript_id "HERVL74_7p21.2a"; locus "HERVL74_7p21.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0040"; repClass "LTR"; repEnd "5671"; repFamily "ERVL"; repLeft "3688"; repStart "-14"; chr7 rmsk exon 14984075 14985146 5844 - . gene_id "HERVL74_7p21.2a"; transcript_id "HERVL74_7p21.2a"; locus "HERVL74_7p21.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0040"; repClass "LTR"; repEnd "3383"; repFamily "ERVL"; repLeft "2284"; repStart "-2302"; chr7 rmsk exon 14986076 14986900 2365 - . gene_id "HERVL74_7p21.2a"; transcript_id "HERVL74_7p21.2a"; locus "HERVL74_7p21.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0040"; repClass "LTR"; repEnd "2326"; repFamily "ERVL"; repLeft "1442"; repStart "-3359"; ### HERVL74_7p21.2b ### chr7 rmsk gene 14987141 14989640 . - . gene_id "HERVL74_7p21.2b"; transcript_id "HERVL74_7p21.2b"; locus "HERVL74_7p21.2b"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0041"; model_cov "1246"; model_pct "21.9"; chr7 rmsk exon 14987141 14987432 1103 - . gene_id "HERVL74_7p21.2b"; transcript_id "HERVL74_7p21.2b"; locus "HERVL74_7p21.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0041"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "3024"; repStart "-2413"; chr7 rmsk exon 14987600 14988184 3640 - . gene_id "HERVL74_7p21.2b"; transcript_id "HERVL74_7p21.2b"; locus "HERVL74_7p21.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "403"; repStart "-4683"; chr7 rmsk exon 14988814 14989211 2941 - . gene_id "HERVL74_7p21.2b"; transcript_id "HERVL74_7p21.2b"; locus "HERVL74_7p21.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0041"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-5285"; chr7 rmsk exon 14989212 14989640 2015 - . gene_id "HERVL74_7p21.2b"; transcript_id "HERVL74_7p21.2b"; locus "HERVL74_7p21.2b"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0041"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERV316A3_7p21.2d ### chr7 rmsk gene 15036204 15039152 . - . gene_id "ERV316A3_7p21.2d"; transcript_id "ERV316A3_7p21.2d"; locus "ERV316A3_7p21.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1364"; model_cov "2376"; model_pct "45.5"; chr7 rmsk exon 15036204 15036813 4064 - . gene_id "ERV316A3_7p21.2d"; transcript_id "ERV316A3_7p21.2d"; locus "ERV316A3_7p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1364"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "1726"; repStart "-2805"; chr7 rmsk exon 15037299 15037328 4064 - . gene_id "ERV316A3_7p21.2d"; transcript_id "ERV316A3_7p21.2d"; locus "ERV316A3_7p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1364"; repClass "LTR"; repEnd "1725"; repFamily "ERVL"; repLeft "1717"; repStart "-3501"; chr7 rmsk exon 15037379 15039017 4064 - . gene_id "ERV316A3_7p21.2d"; transcript_id "ERV316A3_7p21.2d"; locus "ERV316A3_7p21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1364"; repClass "LTR"; repEnd "1716"; repFamily "ERVL"; repLeft "43"; repStart "-3510"; chr7 rmsk exon 15039024 15039152 347 - . gene_id "ERV316A3_7p21.2d"; transcript_id "ERV316A3_7p21.2d"; locus "ERV316A3_7p21.2d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1364"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "346"; repStart "-1"; ### ERVL_7p21.2b ### chr7 rmsk gene 15076561 15078333 . + . gene_id "ERVL_7p21.2b"; transcript_id "ERVL_7p21.2b"; locus "ERVL_7p21.2b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0204"; model_cov "966"; model_pct "16.8"; chr7 rmsk exon 15076561 15076792 384 + . gene_id "ERVL_7p21.2b"; transcript_id "ERVL_7p21.2b"; locus "ERVL_7p21.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0204"; repClass "LTR"; repEnd "2587"; repFamily "ERVL"; repLeft "-3170"; repStart "2355"; chr7 rmsk exon 15077319 15077407 1230 + . gene_id "ERVL_7p21.2b"; transcript_id "ERVL_7p21.2b"; locus "ERVL_7p21.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0204"; repClass "LTR"; repEnd "2930"; repFamily "ERVL"; repLeft "-2827"; repStart "2821"; chr7 rmsk exon 15077721 15078333 1230 + . gene_id "ERVL_7p21.2b"; transcript_id "ERVL_7p21.2b"; locus "ERVL_7p21.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0204"; repClass "LTR"; repEnd "3556"; repFamily "ERVL"; repLeft "-2201"; repStart "2931"; ### ERVLE_7p21.2 ### chr7 rmsk gene 15110579 15114477 . + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1791"; model_cov "2953"; model_pct "52.1"; chr7 rmsk exon 15110579 15111317 2475 + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1791"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "-4813"; repStart "48"; chr7 rmsk exon 15111340 15111980 2012 + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1791"; repClass "LTR"; repEnd "1722"; repFamily "ERVL"; repLeft "-3945"; repStart "1086"; chr7 rmsk exon 15112058 15112311 972 + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1791"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "-3692"; repStart "1705"; chr7 rmsk exon 15112698 15113313 1918 + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1791"; repClass "LTR"; repEnd "3805"; repFamily "ERVL"; repLeft "-1862"; repStart "3189"; chr7 rmsk exon 15113842 15114477 2516 + . gene_id "ERVLE_7p21.2"; transcript_id "ERVLE_7p21.2"; locus "ERVLE_7p21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1791"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "-998"; repStart "4044"; ### ERVL_7p21.2c ### chr7 rmsk gene 15702205 15704874 . + . gene_id "ERVL_7p21.2c"; transcript_id "ERVL_7p21.2c"; locus "ERVL_7p21.2c"; category "unknown"; intModel "ERVL-int"; locid "ERVL-int_0205"; model_cov "1804"; model_pct "31.3"; chr7 rmsk exon 15702205 15702552 2234 + . gene_id "ERVL_7p21.2c"; transcript_id "ERVL_7p21.2c"; locus "ERVL_7p21.2c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0205"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-2021"; repStart "3385"; chr7 rmsk exon 15702557 15702895 1337 + . gene_id "ERVL_7p21.2c"; transcript_id "ERVL_7p21.2c"; locus "ERVL_7p21.2c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0205"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "188"; chr7 rmsk exon 15703292 15704707 8090 + . gene_id "ERVL_7p21.2c"; transcript_id "ERVL_7p21.2c"; locus "ERVL_7p21.2c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0205"; repClass "LTR"; repEnd "5750"; repFamily "ERVL"; repLeft "-7"; repStart "4297"; chr7 rmsk exon 15704713 15704874 932 + . gene_id "ERVL_7p21.2c"; transcript_id "ERVL_7p21.2c"; locus "ERVL_7p21.2c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0205"; repClass "LTR"; repEnd "162"; repFamily "ERVL"; repLeft "-358"; repStart "1"; ### ERVLB4_7p21.2b ### chr7 rmsk gene 15980175 15981507 . - . gene_id "ERVLB4_7p21.2b"; transcript_id "ERVLB4_7p21.2b"; locus "ERVLB4_7p21.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0776"; model_cov "652"; model_pct "11.4"; chr7 rmsk exon 15980175 15980557 1798 - . gene_id "ERVLB4_7p21.2b"; transcript_id "ERVLB4_7p21.2b"; locus "ERVLB4_7p21.2b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0776"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 15980558 15980957 7698 - . gene_id "ERVLB4_7p21.2b"; transcript_id "ERVLB4_7p21.2b"; locus "ERVLB4_7p21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0776"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5302"; repStart "-1"; chr7 rmsk exon 15981280 15981507 7698 - . gene_id "ERVLB4_7p21.2b"; transcript_id "ERVLB4_7p21.2b"; locus "ERVLB4_7p21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0776"; repClass "LTR"; repEnd "5301"; repFamily "ERVL"; repLeft "5060"; repStart "-413"; ### ERVLB4_7p21.2c ### chr7 rmsk gene 15981569 15982484 . - . gene_id "ERVLB4_7p21.2c"; transcript_id "ERVLB4_7p21.2c"; locus "ERVLB4_7p21.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0777"; model_cov "975"; model_pct "17.1"; chr7 rmsk exon 15981569 15982484 7698 - . gene_id "ERVLB4_7p21.2c"; transcript_id "ERVLB4_7p21.2c"; locus "ERVLB4_7p21.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0777"; repClass "LTR"; repEnd "5301"; repFamily "ERVL"; repLeft "4326"; repStart "-413"; ### MER4_7p21.1 ### chr7 rmsk gene 17106411 17112069 . + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0368"; model_cov "3179"; model_pct "48.2"; chr7 rmsk exon 17106411 17106879 3344 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0368"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 17107447 17107533 377 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0368"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr7 rmsk exon 17107611 17107965 1366 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0368"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "-4171"; repStart "2112"; chr7 rmsk exon 17108907 17109011 370 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0368"; repClass "LTR"; repEnd "2630"; repFamily "ERV1"; repLeft "-3968"; repStart "2529"; chr7 rmsk exon 17109003 17109196 1387 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0368"; repClass "LTR"; repEnd "2437"; repFamily "ERV1"; repLeft "-4161"; repStart "2242"; chr7 rmsk exon 17109196 17111602 14851 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0368"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "4110"; chr7 rmsk exon 17111617 17112069 2996 + . gene_id "MER4_7p21.1"; transcript_id "MER4_7p21.1"; locus "MER4_7p21.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0368"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_7p21.1 ### chr7 rmsk gene 17107984 17108837 . + . gene_id "MER4B_7p21.1"; transcript_id "MER4B_7p21.1"; locus "MER4B_7p21.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0200"; model_cov "775"; model_pct "11.5"; chr7 rmsk exon 17107984 17108364 2555 + . gene_id "MER4B_7p21.1"; transcript_id "MER4B_7p21.1"; locus "MER4B_7p21.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0200"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-6166"; repStart "200"; chr7 rmsk exon 17108437 17108598 1112 + . gene_id "MER4B_7p21.1"; transcript_id "MER4B_7p21.1"; locus "MER4B_7p21.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0200"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-5911"; repStart "689"; chr7 rmsk exon 17108620 17108837 1432 + . gene_id "MER4B_7p21.1"; transcript_id "MER4B_7p21.1"; locus "MER4B_7p21.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0200"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "924"; ### HERVH_7p21.1a ### chr7 rmsk gene 17414063 17420763 . + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0624"; model_cov "6108"; model_pct "79.2"; chr7 rmsk exon 17414063 17414497 2479 + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0624"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 17414506 17419342 17546 + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0624"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "23"; chr7 rmsk exon 17419334 17419765 2000 + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0624"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr7 rmsk exon 17419759 17420333 3244 + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0624"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr7 rmsk exon 17420334 17420763 2422 + . gene_id "HERVH_7p21.1a"; transcript_id "HERVH_7p21.1a"; locus "HERVH_7p21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0624"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7p21.1a ### chr7 rmsk gene 19018904 19023669 . - . gene_id "ERVLB4_7p21.1a"; transcript_id "ERVLB4_7p21.1a"; locus "ERVLB4_7p21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0779"; model_cov "3705"; model_pct "64.8"; chr7 rmsk exon 19018904 19019382 2332 - . gene_id "ERVLB4_7p21.1a"; transcript_id "ERVLB4_7p21.1a"; locus "ERVLB4_7p21.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0779"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "1"; repStart "-88"; chr7 rmsk exon 19019383 19019589 6071 - . gene_id "ERVLB4_7p21.1a"; transcript_id "ERVLB4_7p21.1a"; locus "ERVLB4_7p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0779"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5479"; repStart "0"; chr7 rmsk exon 19020458 19020553 6071 - . gene_id "ERVLB4_7p21.1a"; transcript_id "ERVLB4_7p21.1a"; locus "ERVLB4_7p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0779"; repClass "LTR"; repEnd "5478"; repFamily "ERVL"; repLeft "5403"; repStart "-236"; chr7 rmsk exon 19020581 19023669 12484 - . gene_id "ERVLB4_7p21.1a"; transcript_id "ERVLB4_7p21.1a"; locus "ERVLB4_7p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0779"; repClass "LTR"; repEnd "5402"; repFamily "ERVL"; repLeft "2007"; repStart "-312"; ### MER61_7p21.1 ### chr7 rmsk gene 19339195 19343560 . + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0201"; model_cov "3513"; model_pct "67.3"; chr7 rmsk exon 19339195 19339503 1730 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0201"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 19339504 19339984 2494 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0201"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "-4741"; repStart "1"; chr7 rmsk exon 19340290 19340375 2494 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0201"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "-4669"; repStart "477"; chr7 rmsk exon 19340377 19340444 387 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0201"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "631"; chr7 rmsk exon 19340484 19342057 7052 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0201"; repClass "LTR"; repEnd "2999"; repFamily "ERV1"; repLeft "-2218"; repStart "1320"; chr7 rmsk exon 19342352 19343560 7052 + . gene_id "MER61_7p21.1"; transcript_id "MER61_7p21.1"; locus "MER61_7p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0201"; repClass "LTR"; repEnd "4219"; repFamily "ERV1"; repLeft "-998"; repStart "3000"; ### HERV9_7p21.1 ### chr7 rmsk gene 19653808 19660919 . - . gene_id "HERV9_7p21.1"; transcript_id "HERV9_7p21.1"; locus "HERV9_7p21.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0077"; model_cov "5517"; model_pct "65.4"; chr7 rmsk exon 19653808 19654326 3100 - . gene_id "HERV9_7p21.1"; transcript_id "HERV9_7p21.1"; locus "HERV9_7p21.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0077"; repClass "LTR"; repEnd "604"; repFamily "ERV1"; repLeft "1"; repStart "-222"; chr7 rmsk exon 19654327 19654857 4184 - . gene_id "HERV9_7p21.1"; transcript_id "HERV9_7p21.1"; locus "HERV9_7p21.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0077"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7906"; repStart "0"; chr7 rmsk exon 19654858 19660647 30711 - . gene_id "HERV9_7p21.1"; transcript_id "HERV9_7p21.1"; locus "HERV9_7p21.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0077"; repClass "LTR"; repEnd "4990"; repFamily "ERV1"; repLeft "3"; repStart "-3446"; chr7 rmsk exon 19660650 19660919 2044 - . gene_id "HERV9_7p21.1"; transcript_id "HERV9_7p21.1"; locus "HERV9_7p21.1"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0077"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "164"; repStart "-231"; ### ERVLB4_7p21.1b ### chr7 rmsk gene 19861218 19863296 . - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0780"; model_cov "1521"; model_pct "26.6"; chr7 rmsk exon 19861218 19861783 2726 - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0780"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "2948"; repStart "-2188"; chr7 rmsk exon 19861784 19862231 2026 - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0780"; repClass "LTR"; repEnd "2614"; repFamily "ERVL"; repLeft "2143"; repStart "-3100"; chr7 rmsk exon 19862225 19862395 2624 - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0780"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "310"; repStart "-5238"; chr7 rmsk exon 19862860 19863170 2624 - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0780"; repClass "LTR"; repEnd "309"; repFamily "ERVL"; repLeft "3"; repStart "-5405"; chr7 rmsk exon 19863215 19863296 357 - . gene_id "ERVLB4_7p21.1b"; transcript_id "ERVLB4_7p21.1b"; locus "ERVLB4_7p21.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0780"; repClass "LTR"; repEnd "84"; repFamily "ERVL"; repLeft "1"; repStart "-472"; ### HERVH_7p21.1b ### chr7 rmsk gene 20120709 20126555 . + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0625"; model_cov "5099"; model_pct "66.1"; chr7 rmsk exon 20120709 20121160 3122 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr7 rmsk exon 20121169 20124011 14390 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr7 rmsk exon 20123991 20124840 5553 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr7 rmsk exon 20124845 20125470 2906 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr7 rmsk exon 20125519 20125723 1390 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr7 rmsk exon 20125724 20126099 2337 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr7 rmsk exon 20126100 20126555 3168 + . gene_id "HERVH_7p21.1b"; transcript_id "HERVH_7p21.1b"; locus "HERVH_7p21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0625"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP2_7p21.1 ### chr7 rmsk gene 20439558 20443344 . + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0065"; model_cov "1332"; model_pct "43.1"; chr7 rmsk exon 20439558 20440281 4841 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "LTR1C"; geneRegion "ltr"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 20440334 20440606 1005 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "-3518"; repFamily "ERV1"; repLeft "-6606"; repStart "-3793"; chr7 rmsk exon 20440669 20440760 3537 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "761"; repFamily "ERV1"; repLeft "-2327"; repStart "653"; chr7 rmsk exon 20440841 20441444 3537 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "1367"; repFamily "ERV1"; repLeft "-1721"; repStart "762"; chr7 rmsk exon 20441955 20442304 1916 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2744"; chr7 rmsk exon 20442305 20442687 5074 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "LTR1C"; geneRegion "ltr"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "-359"; repStart "1"; chr7 rmsk exon 20442983 20443344 5074 + . gene_id "HUERSP2_7p21.1"; transcript_id "HUERSP2_7p21.1"; locus "HUERSP2_7p21.1"; repName "LTR1C"; geneRegion "ltr"; locid "HUERS-P2-int_0065"; repClass "LTR"; repEnd "738"; repFamily "ERV1"; repLeft "-9"; repStart "389"; ### HERVH_7p21.1c ### chr7 rmsk gene 20546709 20551693 . + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0626"; model_cov "4398"; model_pct "57.0"; chr7 rmsk exon 20546709 20547109 2592 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 20547112 20547176 480 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "65"; repFamily "ERV1"; repLeft "-7648"; repStart "1"; chr7 rmsk exon 20547153 20548843 11478 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1299"; chr7 rmsk exon 20548838 20548985 915 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 20548976 20550699 8232 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr7 rmsk exon 20550701 20550912 1320 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 20550911 20551287 2268 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 20551288 20551693 2731 + . gene_id "HERVH_7p21.1c"; transcript_id "HERVH_7p21.1c"; locus "HERVH_7p21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0626"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### HERVFRD_7p15.3 ### chr7 rmsk gene 21450763 21457089 . - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0079"; model_cov "5448"; model_pct "75.6"; chr7 rmsk exon 21450763 21451438 3846 - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0079"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr7 rmsk exon 21451439 21451814 2789 - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0079"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6815"; repStart "-8"; chr7 rmsk exon 21451806 21452783 23394 - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0079"; repClass "LTR"; repEnd "6209"; repFamily "ERV1"; repLeft "5225"; repStart "-996"; chr7 rmsk exon 21453078 21455291 23394 - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0079"; repClass "LTR"; repEnd "5224"; repFamily "ERV1"; repLeft "2984"; repStart "-1981"; chr7 rmsk exon 21455308 21457089 7055 - . gene_id "HERVFRD_7p15.3"; transcript_id "HERVFRD_7p15.3"; locus "HERVFRD_7p15.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0079"; repClass "LTR"; repEnd "1843"; repFamily "ERV1"; repLeft "1"; repStart "-5362"; ### HERVP71A_7p15.3a ### chr7 rmsk gene 21500880 21508396 . - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0037"; model_cov "7022"; model_pct "92.5"; chr7 rmsk exon 21500880 21501339 3456 - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0037"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 21501340 21502872 11659 - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0037"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "6042"; repStart "0"; chr7 rmsk exon 21502875 21507687 36933 - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0037"; repClass "LTR"; repEnd "5588"; repFamily "ERV1"; repLeft "661"; repStart "-2002"; chr7 rmsk exon 21507678 21508235 4014 - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0037"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-7042"; chr7 rmsk exon 21508236 21508396 1201 - . gene_id "HERVP71A_7p15.3a"; transcript_id "HERVP71A_7p15.3a"; locus "HERVP71A_7p15.3a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0037"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "298"; repStart "0"; ### HERVP71A_7p15.3b ### chr7 rmsk gene 21547317 21556347 . - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0038"; model_cov "7587"; model_pct "100.0"; chr7 rmsk exon 21547317 21547781 3454 - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0038"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 21547782 21548884 55733 - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0038"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "6470"; repStart "0"; chr7 rmsk exon 21549179 21554170 55733 - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0038"; repClass "LTR"; repEnd "6469"; repFamily "ERV1"; repLeft "1425"; repStart "-1121"; chr7 rmsk exon 21554474 21555890 55733 - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0038"; repClass "LTR"; repEnd "1424"; repFamily "ERV1"; repLeft "1"; repStart "-6166"; chr7 rmsk exon 21555891 21556347 3609 - . gene_id "HERVP71A_7p15.3b"; transcript_id "HERVP71A_7p15.3b"; locus "HERVP71A_7p15.3b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0038"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERV316A3_7p15.3a ### chr7 rmsk gene 22099082 22102480 . - . gene_id "ERV316A3_7p15.3a"; transcript_id "ERV316A3_7p15.3a"; locus "ERV316A3_7p15.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1367"; model_cov "3152"; model_pct "60.3"; chr7 rmsk exon 22099082 22100946 3380 - . gene_id "ERV316A3_7p15.3a"; transcript_id "ERV316A3_7p15.3a"; locus "ERV316A3_7p15.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1367"; repClass "LTR"; repEnd "4614"; repFamily "ERVL"; repLeft "2649"; repStart "-612"; chr7 rmsk exon 22100943 22101276 2100 - . gene_id "ERV316A3_7p15.3a"; transcript_id "ERV316A3_7p15.3a"; locus "ERV316A3_7p15.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1367"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "1997"; repStart "-2894"; chr7 rmsk exon 22101652 22102480 2100 - . gene_id "ERV316A3_7p15.3a"; transcript_id "ERV316A3_7p15.3a"; locus "ERV316A3_7p15.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1367"; repClass "LTR"; repEnd "1996"; repFamily "ERVL"; repLeft "1144"; repStart "-3230"; ### ERVLB4_7p15.3 ### chr7 rmsk gene 22544753 22545680 . + . gene_id "ERVLB4_7p15.3"; transcript_id "ERVLB4_7p15.3"; locus "ERVLB4_7p15.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0781"; model_cov "881"; model_pct "15.4"; chr7 rmsk exon 22544753 22544829 266 + . gene_id "ERVLB4_7p15.3"; transcript_id "ERVLB4_7p15.3"; locus "ERVLB4_7p15.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0781"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "-4428"; repStart "1207"; chr7 rmsk exon 22544958 22545205 288 + . gene_id "ERVLB4_7p15.3"; transcript_id "ERVLB4_7p15.3"; locus "ERVLB4_7p15.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0781"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "-4005"; repStart "1447"; chr7 rmsk exon 22545235 22545680 774 + . gene_id "ERVLB4_7p15.3"; transcript_id "ERVLB4_7p15.3"; locus "ERVLB4_7p15.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0781"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "-3441"; repStart "1733"; ### ERV316A3_7p15.3b ### chr7 rmsk gene 22656846 22661312 . + . gene_id "ERV316A3_7p15.3b"; transcript_id "ERV316A3_7p15.3b"; locus "ERV316A3_7p15.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1368"; model_cov "2584"; model_pct "49.4"; chr7 rmsk exon 22656846 22657251 1040 + . gene_id "ERV316A3_7p15.3b"; transcript_id "ERV316A3_7p15.3b"; locus "ERV316A3_7p15.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1368"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "9"; chr7 rmsk exon 22657311 22657950 1705 + . gene_id "ERV316A3_7p15.3b"; transcript_id "ERV316A3_7p15.3b"; locus "ERV316A3_7p15.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1368"; repClass "LTR"; repEnd "957"; repFamily "ERVL"; repLeft "-4269"; repStart "310"; chr7 rmsk exon 22658465 22660363 2943 + . gene_id "ERV316A3_7p15.3b"; transcript_id "ERV316A3_7p15.3b"; locus "ERV316A3_7p15.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1368"; repClass "LTR"; repEnd "2665"; repFamily "ERVL"; repLeft "-2561"; repStart "728"; chr7 rmsk exon 22660895 22661312 1691 + . gene_id "ERV316A3_7p15.3b"; transcript_id "ERV316A3_7p15.3b"; locus "ERV316A3_7p15.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1368"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "12"; ### HERVH_7p15.3a ### chr7 rmsk gene 22703358 22709313 . + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0627"; model_cov "5294"; model_pct "68.6"; chr7 rmsk exon 22703358 22703765 2770 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 22703768 22703805 257 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "39"; repFamily "ERV1"; repLeft "-7674"; repStart "1"; chr7 rmsk exon 22703806 22707656 23894 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "18"; chr7 rmsk exon 22707661 22708325 4453 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr7 rmsk exon 22708306 22708542 1449 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr7 rmsk exon 22708541 22708903 2235 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 22708904 22709313 2784 + . gene_id "HERVH_7p15.3a"; transcript_id "HERVH_7p15.3a"; locus "HERVH_7p15.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0627"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4B_7p15.3 ### chr7 rmsk gene 22744511 22745642 . - . gene_id "MER4B_7p15.3"; transcript_id "MER4B_7p15.3"; locus "MER4B_7p15.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0201"; model_cov "826"; model_pct "12.2"; chr7 rmsk exon 22744511 22744867 2567 - . gene_id "MER4B_7p15.3"; transcript_id "MER4B_7p15.3"; locus "MER4B_7p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0201"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6379"; repStart "0"; chr7 rmsk exon 22745232 22745642 2567 - . gene_id "MER4B_7p15.3"; transcript_id "MER4B_7p15.3"; locus "MER4B_7p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0201"; repClass "LTR"; repEnd "6378"; repFamily "ERV1"; repLeft "5931"; repStart "-380"; ### MER61_7p15.3 ### chr7 rmsk gene 22801905 22808598 . + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0202"; model_cov "5192"; model_pct "99.5"; chr7 rmsk exon 22801905 22802366 2199 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0202"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 22802383 22804089 31061 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0202"; repClass "LTR"; repEnd "1841"; repFamily "ERV1"; repLeft "-3376"; repStart "19"; chr7 rmsk exon 22804398 22804800 31061 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0202"; repClass "LTR"; repEnd "2241"; repFamily "ERV1"; repLeft "-2976"; repStart "1842"; chr7 rmsk exon 22805097 22805988 31061 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0202"; repClass "LTR"; repEnd "3038"; repFamily "ERV1"; repLeft "-2179"; repStart "2242"; chr7 rmsk exon 22806026 22808138 31061 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0202"; repClass "LTR"; repEnd "5214"; repFamily "ERV1"; repLeft "-3"; repStart "3039"; chr7 rmsk exon 22808141 22808598 2257 + . gene_id "MER61_7p15.3"; transcript_id "MER61_7p15.3"; locus "MER61_7p15.3"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0202"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HERVH_7p15.3b ### chr7 rmsk gene 22913465 22918928 . + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0628"; model_cov "4646"; model_pct "60.2"; chr7 rmsk exon 22913465 22913829 1704 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 22913830 22914257 1001 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 22914318 22916350 11696 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "801"; chr7 rmsk exon 22916351 22916582 1340 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3357"; chr7 rmsk exon 22916577 22917745 6177 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "-2803"; repStart "3806"; chr7 rmsk exon 22917746 22918006 1355 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr7 rmsk exon 22918000 22918552 3234 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr7 rmsk exon 22918553 22918928 2085 + . gene_id "HERVH_7p15.3b"; transcript_id "HERVH_7p15.3b"; locus "HERVH_7p15.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0628"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7p15.3a ### chr7 rmsk gene 22936049 22936883 . - . gene_id "ERVLE_7p15.3a"; transcript_id "ERVLE_7p15.3a"; locus "ERVLE_7p15.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1794"; model_cov "978"; model_pct "17.3"; chr7 rmsk exon 22936049 22936883 1002 - . gene_id "ERVLE_7p15.3a"; transcript_id "ERVLE_7p15.3a"; locus "ERVLE_7p15.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1794"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "3558"; repStart "-1131"; ### PRIMA41_7p15.3 ### chr7 rmsk gene 23081373 23086085 . - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0067"; model_cov "3373"; model_pct "43.5"; chr7 rmsk exon 23081373 23081676 3921 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "224"; repStart "0"; chr7 rmsk exon 23081930 23082156 3921 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "223"; repFamily "ERV1"; repLeft "2"; repStart "-298"; chr7 rmsk exon 23082168 23082728 4493 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7194"; repStart "0"; chr7 rmsk exon 23082705 23083947 9851 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "6400"; repFamily "ERV1"; repLeft "5145"; repStart "-1356"; chr7 rmsk exon 23083947 23084176 1886 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "4628"; repFamily "ERV1"; repLeft "4399"; repStart "-3128"; chr7 rmsk exon 23084177 23084872 10273 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "2330"; repStart "-4701"; chr7 rmsk exon 23085175 23085604 10273 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "1917"; repStart "-5427"; chr7 rmsk exon 23085896 23086085 10273 - . gene_id "PRIMA41_7p15.3"; transcript_id "PRIMA41_7p15.3"; locus "PRIMA41_7p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0067"; repClass "LTR"; repEnd "1916"; repFamily "ERV1"; repLeft "1726"; repStart "-5840"; ### HERVI_7p15.3 ### chr7 rmsk gene 23653708 23656659 . + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0013"; model_cov "1555"; model_pct "20.0"; chr7 rmsk exon 23653708 23654222 3957 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 23654248 23655475 2503 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "1067"; repFamily "ERV1"; repLeft "-6718"; repStart "74"; chr7 rmsk exon 23655948 23656380 1147 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "4508"; repFamily "ERV1"; repLeft "-3277"; repStart "4224"; chr7 rmsk exon 23656383 23656471 460 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "4572"; repFamily "ERV1"; repLeft "-3213"; repStart "4474"; chr7 rmsk exon 23656502 23656598 374 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "4862"; repFamily "ERV1"; repLeft "-2923"; repStart "4767"; chr7 rmsk exon 23656568 23656659 347 + . gene_id "HERVI_7p15.3"; transcript_id "HERVI_7p15.3"; locus "HERVI_7p15.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0013"; repClass "LTR"; repEnd "5416"; repFamily "ERV1"; repLeft "-2369"; repStart "5331"; ### HERVIP10F_7p15.3 ### chr7 rmsk gene 23656681 23659323 . + . gene_id "HERVIP10F_7p15.3"; transcript_id "HERVIP10F_7p15.3"; locus "HERVIP10F_7p15.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0049"; model_cov "2055"; model_pct "26.6"; chr7 rmsk exon 23656681 23657570 2187 + . gene_id "HERVIP10F_7p15.3"; transcript_id "HERVIP10F_7p15.3"; locus "HERVIP10F_7p15.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0049"; repClass "LTR"; repEnd "6459"; repFamily "ERV1"; repLeft "-1278"; repStart "5639"; chr7 rmsk exon 23657570 23658799 7155 + . gene_id "HERVIP10F_7p15.3"; transcript_id "HERVIP10F_7p15.3"; locus "HERVIP10F_7p15.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0049"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "6500"; chr7 rmsk exon 23658804 23659323 4119 + . gene_id "HERVIP10F_7p15.3"; transcript_id "HERVIP10F_7p15.3"; locus "HERVIP10F_7p15.3"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0049"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERVLE_7p15.3b ### chr7 rmsk gene 23703575 23705572 . + . gene_id "ERVLE_7p15.3b"; transcript_id "ERVLE_7p15.3b"; locus "ERVLE_7p15.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1796"; model_cov "1737"; model_pct "30.7"; chr7 rmsk exon 23703575 23704437 957 + . gene_id "ERVLE_7p15.3b"; transcript_id "ERVLE_7p15.3b"; locus "ERVLE_7p15.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1796"; repClass "LTR"; repEnd "1280"; repFamily "ERVL"; repLeft "-4387"; repStart "362"; chr7 rmsk exon 23704740 23705572 957 + . gene_id "ERVLE_7p15.3b"; transcript_id "ERVLE_7p15.3b"; locus "ERVLE_7p15.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1796"; repClass "LTR"; repEnd "2100"; repFamily "ERVL"; repLeft "-3567"; repStart "1281"; ### ERV316A3_7p15.3c ### chr7 rmsk gene 24055552 24057464 . - . gene_id "ERV316A3_7p15.3c"; transcript_id "ERV316A3_7p15.3c"; locus "ERV316A3_7p15.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1369"; model_cov "1401"; model_pct "26.8"; chr7 rmsk exon 24055552 24055729 444 - . gene_id "ERV316A3_7p15.3c"; transcript_id "ERV316A3_7p15.3c"; locus "ERV316A3_7p15.3c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1369"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "237"; repStart "-67"; chr7 rmsk exon 24055770 24055894 485 - . gene_id "ERV316A3_7p15.3c"; transcript_id "ERV316A3_7p15.3c"; locus "ERV316A3_7p15.3c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1369"; repClass "LTR"; repEnd "130"; repFamily "ERVL"; repLeft "1"; repStart "-359"; chr7 rmsk exon 24056104 24057464 3123 - . gene_id "ERV316A3_7p15.3c"; transcript_id "ERV316A3_7p15.3c"; locus "ERV316A3_7p15.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1369"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "3606"; repStart "-219"; ### HERVH_7p15.3c ### chr7 rmsk gene 24396245 24401985 . + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0629"; model_cov "4908"; model_pct "63.6"; chr7 rmsk exon 24396245 24396697 3473 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 24396700 24399694 21250 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr7 rmsk exon 24399674 24399820 878 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 24399820 24400310 3549 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr7 rmsk exon 24400313 24400951 4302 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 24400953 24401167 1376 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 24401166 24401545 2647 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 24401546 24401985 3210 + . gene_id "HERVH_7p15.3c"; transcript_id "HERVH_7p15.3c"; locus "HERVH_7p15.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0629"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_7p15.3 ### chr7 rmsk gene 24789291 24795789 . - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0095"; model_cov "5630"; model_pct "81.6"; chr7 rmsk exon 24789291 24789746 3388 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 24789747 24790688 7815 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "5937"; repStart "-1"; chr7 rmsk exon 24790683 24791248 3480 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "5125"; repFamily "ERV1"; repLeft "4552"; repStart "-1771"; chr7 rmsk exon 24791245 24791338 702 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "4173"; repFamily "ERV1"; repLeft "4080"; repStart "-2723"; chr7 rmsk exon 24791336 24791668 2187 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "3977"; repFamily "ERV1"; repLeft "3644"; repStart "-2919"; chr7 rmsk exon 24791649 24793801 17481 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "1804"; repStart "-2947"; chr7 rmsk exon 24793781 24794264 4413 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "2609"; repStart "-3753"; chr7 rmsk exon 24794313 24795350 4602 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "995"; repFamily "ERV1"; repLeft "1"; repStart "-5901"; chr7 rmsk exon 24795351 24795789 3167 - . gene_id "HARLEQUIN_7p15.3"; transcript_id "HARLEQUIN_7p15.3"; locus "HARLEQUIN_7p15.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0095"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7p15.3c ### chr7 rmsk gene 25163396 25165456 . + . gene_id "ERVLE_7p15.3c"; transcript_id "ERVLE_7p15.3c"; locus "ERVLE_7p15.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1797"; model_cov "1541"; model_pct "27.2"; chr7 rmsk exon 25163396 25163955 1841 + . gene_id "ERVLE_7p15.3c"; transcript_id "ERVLE_7p15.3c"; locus "ERVLE_7p15.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1797"; repClass "LTR"; repEnd "4454"; repFamily "ERVL"; repLeft "-1213"; repStart "3881"; chr7 rmsk exon 25164062 25164636 1755 + . gene_id "ERVLE_7p15.3c"; transcript_id "ERVLE_7p15.3c"; locus "ERVLE_7p15.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1797"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "-439"; repStart "4598"; chr7 rmsk exon 25165123 25165456 1755 + . gene_id "ERVLE_7p15.3c"; transcript_id "ERVLE_7p15.3c"; locus "ERVLE_7p15.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1797"; repClass "LTR"; repEnd "5567"; repFamily "ERVL"; repLeft "-100"; repStart "5229"; ### HERVL40_7p15.3 ### chr7 rmsk gene 25249899 25252738 . + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0200"; model_cov "2404"; model_pct "43.5"; chr7 rmsk exon 25249899 25250128 837 + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0200"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "-4379"; repStart "924"; chr7 rmsk exon 25250499 25250692 713 + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0200"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "-3932"; repStart "1405"; chr7 rmsk exon 25250846 25251378 3637 + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0200"; repClass "LTR"; repEnd "3261"; repFamily "ERVL"; repLeft "-2269"; repStart "2672"; chr7 rmsk exon 25251461 25252367 3637 + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0200"; repClass "LTR"; repEnd "4268"; repFamily "ERVL"; repLeft "-1262"; repStart "3262"; chr7 rmsk exon 25252366 25252738 1762 + . gene_id "HERVL40_7p15.3"; transcript_id "HERVL40_7p15.3"; locus "HERVL40_7p15.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0200"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-350"; repStart "4791"; ### HERVH_7p15.2 ### chr7 rmsk gene 26024200 26029809 . - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0630"; model_cov "4689"; model_pct "60.8"; chr7 rmsk exon 26024200 26024639 3766 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 26024640 26025231 2597 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 26025233 26025891 4155 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 26025894 26026393 3474 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 26026384 26026531 859 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 26026526 26029368 15819 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 26029369 26029809 3766 - . gene_id "HERVH_7p15.2"; transcript_id "HERVH_7p15.2"; locus "HERVH_7p15.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0630"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_7p15.2a ### chr7 rmsk gene 26122901 26125681 . + . gene_id "HERVL_7p15.2a"; transcript_id "HERVL_7p15.2a"; locus "HERVL_7p15.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0674"; model_cov "2387"; model_pct "42.2"; chr7 rmsk exon 26122901 26125284 19425 + . gene_id "HERVL_7p15.2a"; transcript_id "HERVL_7p15.2a"; locus "HERVL_7p15.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0674"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3267"; chr7 rmsk exon 26125285 26125681 3163 + . gene_id "HERVL_7p15.2a"; transcript_id "HERVL_7p15.2a"; locus "HERVL_7p15.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0674"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; ### HERVH48_7p15.2 ### chr7 rmsk gene 26244062 26250593 . + . gene_id "HERVH48_7p15.2"; transcript_id "HERVH48_7p15.2"; locus "HERVH48_7p15.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0025"; model_cov "6559"; model_pct "98.6"; chr7 rmsk exon 26244062 26247652 17609 + . gene_id "HERVH48_7p15.2"; transcript_id "HERVH48_7p15.2"; locus "HERVH48_7p15.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0025"; repClass "LTR"; repEnd "4433"; repFamily "ERV1"; repLeft "-2221"; repStart "81"; chr7 rmsk exon 26247952 26249661 17609 + . gene_id "HERVH48_7p15.2"; transcript_id "HERVH48_7p15.2"; locus "HERVH48_7p15.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0025"; repClass "LTR"; repEnd "6169"; repFamily "ERV1"; repLeft "-485"; repStart "4434"; chr7 rmsk exon 26249742 26250217 3897 + . gene_id "HERVH48_7p15.2"; transcript_id "HERVH48_7p15.2"; locus "HERVH48_7p15.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0025"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "-7"; repStart "6175"; chr7 rmsk exon 26250221 26250593 2678 + . gene_id "HERVH48_7p15.2"; transcript_id "HERVH48_7p15.2"; locus "HERVH48_7p15.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0025"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4B_7p15.2 ### chr7 rmsk gene 26256985 26260091 . - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0202"; model_cov "2307"; model_pct "34.1"; chr7 rmsk exon 26256985 26257035 300 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "6596"; repStart "-113"; chr7 rmsk exon 26257055 26257151 5366 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "6611"; repFamily "ERV1"; repLeft "6512"; repStart "-147"; chr7 rmsk exon 26257729 26258568 5366 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "6511"; repFamily "ERV1"; repLeft "5633"; repStart "-247"; chr7 rmsk exon 26258558 26258777 1121 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "5400"; repFamily "ERV1"; repLeft "5154"; repStart "-1358"; chr7 rmsk exon 26258852 26259104 1506 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "5031"; repFamily "ERV1"; repLeft "4698"; repStart "-1727"; chr7 rmsk exon 26259408 26259657 1506 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "4697"; repFamily "ERV1"; repLeft "4452"; repStart "-2061"; chr7 rmsk exon 26259657 26260091 2586 - . gene_id "MER4B_7p15.2"; transcript_id "MER4B_7p15.2"; locus "MER4B_7p15.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0202"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3631"; repStart "-2670"; ### HERVL_7p15.2b ### chr7 rmsk gene 26996592 27002445 . + . gene_id "HERVL_7p15.2b"; transcript_id "HERVL_7p15.2b"; locus "HERVL_7p15.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0675"; model_cov "5395"; model_pct "95.4"; chr7 rmsk exon 26996592 26997073 3040 + . gene_id "HERVL_7p15.2b"; transcript_id "HERVL_7p15.2b"; locus "HERVL_7p15.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0675"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 26997074 26998333 21201 + . gene_id "HERVL_7p15.2b"; transcript_id "HERVL_7p15.2b"; locus "HERVL_7p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0675"; repClass "LTR"; repEnd "1294"; repFamily "ERVL"; repLeft "-4360"; repStart "1"; chr7 rmsk exon 26998385 27000000 21201 + . gene_id "HERVL_7p15.2b"; transcript_id "HERVL_7p15.2b"; locus "HERVL_7p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0675"; repClass "LTR"; repEnd "2955"; repFamily "ERVL"; repLeft "-2699"; repStart "1295"; chr7 rmsk exon 27000001 27002445 19624 + . gene_id "HERVL_7p15.2b"; transcript_id "HERVL_7p15.2b"; locus "HERVL_7p15.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0675"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "-256"; repStart "2956"; ### ERVLE_7p14.3a ### chr7 rmsk gene 28975149 28979775 . + . gene_id "ERVLE_7p14.3a"; transcript_id "ERVLE_7p14.3a"; locus "ERVLE_7p14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1799"; model_cov "3902"; model_pct "68.9"; chr7 rmsk exon 28975149 28975465 1197 + . gene_id "ERVLE_7p14.3a"; transcript_id "ERVLE_7p14.3a"; locus "ERVLE_7p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1799"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-3964"; repStart "1369"; chr7 rmsk exon 28975667 28976925 3601 + . gene_id "ERVLE_7p14.3a"; transcript_id "ERVLE_7p14.3a"; locus "ERVLE_7p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1799"; repClass "LTR"; repEnd "3024"; repFamily "ERVL"; repLeft "-2643"; repStart "1717"; chr7 rmsk exon 28977403 28978255 2109 + . gene_id "ERVLE_7p14.3a"; transcript_id "ERVLE_7p14.3a"; locus "ERVLE_7p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1799"; repClass "LTR"; repEnd "4316"; repFamily "ERVL"; repLeft "-1351"; repStart "3357"; chr7 rmsk exon 28978490 28979775 3008 + . gene_id "ERVLE_7p14.3a"; transcript_id "ERVLE_7p14.3a"; locus "ERVLE_7p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1799"; repClass "LTR"; repEnd "5598"; repFamily "ERVL"; repLeft "-69"; repStart "4296"; ### MER61_7p14.3a ### chr7 rmsk gene 29297008 29299249 . - . gene_id "MER61_7p14.3a"; transcript_id "MER61_7p14.3a"; locus "MER61_7p14.3a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0203"; model_cov "1718"; model_pct "32.9"; chr7 rmsk exon 29297008 29297321 1651 - . gene_id "MER61_7p14.3a"; transcript_id "MER61_7p14.3a"; locus "MER61_7p14.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0203"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr7 rmsk exon 29297322 29298989 8863 - . gene_id "MER61_7p14.3a"; transcript_id "MER61_7p14.3a"; locus "MER61_7p14.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0203"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3499"; repStart "0"; chr7 rmsk exon 29298995 29299249 1354 - . gene_id "MER61_7p14.3a"; transcript_id "MER61_7p14.3a"; locus "MER61_7p14.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0203"; repClass "LTR"; repEnd "273"; repFamily "ERV1"; repLeft "1"; repStart "-68"; ### HERVS71_7p14.3 ### chr7 rmsk gene 29636372 29646401 . - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0020"; model_cov "8785"; model_pct "97.9"; chr7 rmsk exon 29636372 29636862 2316 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "32"; repStart "0"; chr7 rmsk exon 29636881 29636925 265 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "8266"; repFamily "ERV1"; repLeft "8222"; repStart "-712"; chr7 rmsk exon 29636925 29644127 44060 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "8934"; repFamily "ERV1"; repLeft "1705"; repStart "-44"; chr7 rmsk exon 29644153 29644842 3745 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "1619"; repFamily "ERV1"; repLeft "929"; repStart "-7359"; chr7 rmsk exon 29644868 29645168 2145 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "849"; repFamily "ERV1"; repLeft "549"; repStart "-8129"; chr7 rmsk exon 29645266 29645311 2145 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "494"; repStart "-8430"; chr7 rmsk exon 29645529 29645875 1189 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "4"; repStart "-8506"; chr7 rmsk exon 29645878 29646401 2467 - . gene_id "HERVS71_7p14.3"; transcript_id "HERVS71_7p14.3"; locus "HERVS71_7p14.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0020"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_7p14.3a ### chr7 rmsk gene 29784992 29792525 . + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0631"; model_cov "6854"; model_pct "88.9"; chr7 rmsk exon 29784992 29785389 3022 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 29785392 29788241 15380 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr7 rmsk exon 29788236 29788381 819 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 29788381 29788872 3414 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr7 rmsk exon 29788875 29792127 24980 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4488"; chr7 rmsk exon 29792128 29792525 3078 + . gene_id "HERVH_7p14.3a"; transcript_id "HERVH_7p14.3a"; locus "HERVH_7p14.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0631"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_7p14.3b ### chr7 rmsk gene 30479569 30485283 . + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0632"; model_cov "4876"; model_pct "63.2"; chr7 rmsk exon 30479569 30479952 1918 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 30479953 30480380 1116 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 30480440 30482647 13353 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "801"; chr7 rmsk exon 30482627 30483081 2781 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "3592"; repFamily "ERV1"; repLeft "-4121"; repStart "3140"; chr7 rmsk exon 30483075 30484480 8084 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3813"; chr7 rmsk exon 30484498 30484918 2695 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7277"; chr7 rmsk exon 30484921 30485283 2087 + . gene_id "HERVH_7p14.3b"; transcript_id "HERVH_7p14.3b"; locus "HERVH_7p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0632"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HML1_7p14.3a ### chr7 rmsk gene 30536160 30537509 . + . gene_id "HML1_7p14.3a"; transcript_id "HML1_7p14.3a"; locus "HML1_7p14.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0049"; model_cov "909"; model_pct "14.9"; chr7 rmsk exon 30536160 30536569 2198 + . gene_id "HML1_7p14.3a"; transcript_id "HML1_7p14.3a"; locus "HML1_7p14.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0049"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr7 rmsk exon 30536570 30537268 5297 + . gene_id "HML1_7p14.3a"; transcript_id "HML1_7p14.3a"; locus "HML1_7p14.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0049"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "-5398"; repStart "1"; chr7 rmsk exon 30537303 30537509 1274 + . gene_id "HML1_7p14.3a"; transcript_id "HML1_7p14.3a"; locus "HML1_7p14.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0049"; repClass "LTR"; repEnd "1916"; repFamily "ERVK"; repLeft "-4180"; repStart "1704"; ### HML1_7p14.3b ### chr7 rmsk gene 30543642 30546185 . + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0050"; model_cov "1207"; model_pct "19.8"; chr7 rmsk exon 30543642 30543880 1822 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "-3921"; repStart "1927"; chr7 rmsk exon 30544898 30544977 510 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "4359"; repFamily "ERVK"; repLeft "-1737"; repStart "4272"; chr7 rmsk exon 30544977 30545430 2011 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "5600"; repFamily "ERVK"; repLeft "-496"; repStart "5046"; chr7 rmsk exon 30545433 30545610 1435 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5715"; chr7 rmsk exon 30545673 30545772 607 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5960"; chr7 rmsk exon 30545776 30546185 2100 + . gene_id "HML1_7p14.3b"; transcript_id "HML1_7p14.3b"; locus "HML1_7p14.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0050"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_7p14.3a ### chr7 rmsk gene 30567785 30571827 . + . gene_id "MER4_7p14.3a"; transcript_id "MER4_7p14.3a"; locus "MER4_7p14.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0370"; model_cov "3036"; model_pct "46.0"; chr7 rmsk exon 30567785 30568319 3038 + . gene_id "MER4_7p14.3a"; transcript_id "MER4_7p14.3a"; locus "MER4_7p14.3a"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0370"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 30568322 30569340 4204 + . gene_id "MER4_7p14.3a"; transcript_id "MER4_7p14.3a"; locus "MER4_7p14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0370"; repClass "LTR"; repEnd "1110"; repFamily "ERV1"; repLeft "-5488"; repStart "1"; chr7 rmsk exon 30569371 30570047 4204 + . gene_id "MER4_7p14.3a"; transcript_id "MER4_7p14.3a"; locus "MER4_7p14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0370"; repClass "LTR"; repEnd "1813"; repFamily "ERV1"; repLeft "-4785"; repStart "1111"; chr7 rmsk exon 30570907 30571827 3318 + . gene_id "MER4_7p14.3a"; transcript_id "MER4_7p14.3a"; locus "MER4_7p14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0370"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "1260"; ### MER4_7p14.3b ### chr7 rmsk gene 30579723 30584961 . + . gene_id "MER4_7p14.3b"; transcript_id "MER4_7p14.3b"; locus "MER4_7p14.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0372"; model_cov "3340"; model_pct "50.6"; chr7 rmsk exon 30579723 30579881 1990 + . gene_id "MER4_7p14.3b"; transcript_id "MER4_7p14.3b"; locus "MER4_7p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0372"; repClass "LTR"; repEnd "3401"; repFamily "ERV1"; repLeft "-3197"; repStart "3240"; chr7 rmsk exon 30580157 30580501 1990 + . gene_id "MER4_7p14.3b"; transcript_id "MER4_7p14.3b"; locus "MER4_7p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0372"; repClass "LTR"; repEnd "3750"; repFamily "ERV1"; repLeft "-2848"; repStart "3402"; chr7 rmsk exon 30581428 30584276 15501 + . gene_id "MER4_7p14.3b"; transcript_id "MER4_7p14.3b"; locus "MER4_7p14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0372"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "3762"; chr7 rmsk exon 30584288 30584961 3331 + . gene_id "MER4_7p14.3b"; transcript_id "MER4_7p14.3b"; locus "MER4_7p14.3b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0372"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_7p14.3 ### chr7 rmsk gene 30807527 30811981 . + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0096"; model_cov "2933"; model_pct "42.5"; chr7 rmsk exon 30807527 30807994 3965 + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0096"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 30807995 30809895 21732 + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0096"; repClass "LTR"; repEnd "1914"; repFamily "ERV1"; repLeft "-4982"; repStart "1"; chr7 rmsk exon 30810202 30811188 21732 + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0096"; repClass "LTR"; repEnd "2894"; repFamily "ERV1"; repLeft "-4002"; repStart "1915"; chr7 rmsk exon 30811191 30811232 271 + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0096"; repClass "LTR"; repEnd "1731"; repFamily "ERV1"; repLeft "-5165"; repStart "1690"; chr7 rmsk exon 30811520 30811981 4012 + . gene_id "HARLEQUIN_7p14.3"; transcript_id "HARLEQUIN_7p14.3"; locus "HARLEQUIN_7p14.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0096"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_7p14.3b ### chr7 rmsk gene 31206918 31208730 . - . gene_id "ERVLE_7p14.3b"; transcript_id "ERVLE_7p14.3b"; locus "ERVLE_7p14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1800"; model_cov "1932"; model_pct "34.1"; chr7 rmsk exon 31206918 31208480 3264 - . gene_id "ERVLE_7p14.3b"; transcript_id "ERVLE_7p14.3b"; locus "ERVLE_7p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1800"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "2499"; repStart "-1464"; chr7 rmsk exon 31208517 31208730 500 - . gene_id "ERVLE_7p14.3b"; transcript_id "ERVLE_7p14.3b"; locus "ERVLE_7p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1800"; repClass "LTR"; repEnd "1449"; repFamily "ERVL"; repLeft "1221"; repStart "-4218"; ### HERVH_7p14.3c ### chr7 rmsk gene 31466860 31472379 . - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0633"; model_cov "4723"; model_pct "61.2"; chr7 rmsk exon 31466860 31467260 2574 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 31467261 31467633 2393 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 31467634 31467849 1392 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 31467851 31468512 4556 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr7 rmsk exon 31468516 31469369 6549 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr7 rmsk exon 31469356 31471626 15679 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "741"; repStart "-4721"; chr7 rmsk exon 31471622 31471974 2737 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "352"; repFamily "ERV1"; repLeft "1"; repStart "-7361"; chr7 rmsk exon 31471977 31472379 2611 - . gene_id "HERVH_7p14.3c"; transcript_id "HERVH_7p14.3c"; locus "HERVH_7p14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0633"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### LTR19_7p14.3 ### chr7 rmsk gene 31539598 31543430 . - . gene_id "LTR19_7p14.3"; transcript_id "LTR19_7p14.3"; locus "LTR19_7p14.3"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0021"; model_cov "3426"; model_pct "61.3"; chr7 rmsk exon 31539598 31540066 3068 - . gene_id "LTR19_7p14.3"; transcript_id "LTR19_7p14.3"; locus "LTR19_7p14.3"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0021"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 31540067 31540227 1233 - . gene_id "LTR19_7p14.3"; transcript_id "LTR19_7p14.3"; locus "LTR19_7p14.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0021"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "5426"; repStart "0"; chr7 rmsk exon 31540226 31543430 24389 - . gene_id "LTR19_7p14.3"; transcript_id "LTR19_7p14.3"; locus "LTR19_7p14.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0021"; repClass "LTR"; repEnd "4705"; repFamily "ERV1"; repLeft "1439"; repStart "-881"; ### MER4_7p14.3c ### chr7 rmsk gene 32515103 32516266 . + . gene_id "MER4_7p14.3c"; transcript_id "MER4_7p14.3c"; locus "MER4_7p14.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0373"; model_cov "952"; model_pct "14.4"; chr7 rmsk exon 32515103 32515267 1047 + . gene_id "MER4_7p14.3c"; transcript_id "MER4_7p14.3c"; locus "MER4_7p14.3c"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0373"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "446"; chr7 rmsk exon 32515271 32515741 2229 + . gene_id "MER4_7p14.3c"; transcript_id "MER4_7p14.3c"; locus "MER4_7p14.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0373"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "-6035"; repStart "1"; chr7 rmsk exon 32515813 32515897 311 + . gene_id "MER4_7p14.3c"; transcript_id "MER4_7p14.3c"; locus "MER4_7p14.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0373"; repClass "LTR"; repEnd "825"; repFamily "ERV1"; repLeft "-5773"; repStart "751"; chr7 rmsk exon 32515928 32516266 1140 + . gene_id "MER4_7p14.3c"; transcript_id "MER4_7p14.3c"; locus "MER4_7p14.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0373"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2112"; ### MER4B_7p14.3 ### chr7 rmsk gene 32516285 32528428 . + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0203"; model_cov "6437"; model_pct "95.3"; chr7 rmsk exon 32516285 32517293 5463 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "1305"; repFamily "ERV1"; repLeft "-5453"; repStart "195"; chr7 rmsk exon 32517603 32517822 5463 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "1434"; repFamily "ERV1"; repLeft "-5324"; repStart "1015"; chr7 rmsk exon 32518127 32519146 4362 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "2745"; repFamily "ERV1"; repLeft "-4013"; repStart "1586"; chr7 rmsk exon 32519451 32519739 2029 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "3065"; repFamily "ERV1"; repLeft "-3693"; repStart "2746"; chr7 rmsk exon 32520119 32520153 2029 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "-3663"; repStart "3066"; chr7 rmsk exon 32520140 32520818 4011 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "4108"; repFamily "ERV1"; repLeft "-2650"; repStart "3421"; chr7 rmsk exon 32523082 32523508 10078 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "4567"; repFamily "ERV1"; repLeft "-2191"; repStart "4045"; chr7 rmsk exon 32524146 32524234 10078 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "4633"; repFamily "ERV1"; repLeft "-2125"; repStart "4568"; chr7 rmsk exon 32524514 32524529 10078 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "4634"; repFamily "ERV1"; repLeft "-2124"; repStart "4634"; chr7 rmsk exon 32524559 32525867 10078 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "5989"; repFamily "ERV1"; repLeft "-769"; repStart "4634"; chr7 rmsk exon 32527008 32527785 3699 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "5986"; chr7 rmsk exon 32527786 32528428 2925 + . gene_id "MER4B_7p14.3"; transcript_id "MER4B_7p14.3"; locus "MER4B_7p14.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0203"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_7p14.3b ### chr7 rmsk gene 32525882 32527007 . - . gene_id "MER61_7p14.3b"; transcript_id "MER61_7p14.3b"; locus "MER61_7p14.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0204"; model_cov "524"; model_pct "10.0"; chr7 rmsk exon 32525882 32526185 1343 - . gene_id "MER61_7p14.3b"; transcript_id "MER61_7p14.3b"; locus "MER61_7p14.3b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0204"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr7 rmsk exon 32526186 32526672 2202 - . gene_id "MER61_7p14.3b"; transcript_id "MER61_7p14.3b"; locus "MER61_7p14.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0204"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4693"; repStart "0"; chr7 rmsk exon 32526759 32527007 1097 - . gene_id "MER61_7p14.3b"; transcript_id "MER61_7p14.3b"; locus "MER61_7p14.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0204"; repClass "LTR"; repEnd "258"; repFamily "ERV1"; repLeft "1"; repStart "-83"; ### HERVH_7p14.3d ### chr7 rmsk gene 32832561 32838271 . + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0634"; model_cov "5280"; model_pct "68.5"; chr7 rmsk exon 32832561 32833012 3377 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr7 rmsk exon 32833020 32836612 14987 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr7 rmsk exon 32836610 32837278 4322 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chr7 rmsk exon 32837280 32837495 1391 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 32837486 32837872 2527 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7312"; chr7 rmsk exon 32837873 32838271 2789 + . gene_id "HERVH_7p14.3d"; transcript_id "HERVH_7p14.3d"; locus "HERVH_7p14.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0634"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_7p14.3e ### chr7 rmsk gene 32838742 32843539 . - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0635"; model_cov "3926"; model_pct "50.9"; chr7 rmsk exon 32838742 32839182 3957 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 32839183 32839608 2058 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7411"; repStart "0"; chr7 rmsk exon 32839612 32840097 3303 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3505"; repStart "-3720"; chr7 rmsk exon 32840102 32840249 885 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 32840244 32843098 15200 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 32843099 32843539 3919 - . gene_id "HERVH_7p14.3e"; transcript_id "HERVH_7p14.3e"; locus "HERVH_7p14.3e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0635"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_7p14.3 ### chr7 rmsk gene 33124151 33128321 . + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0203"; model_cov "2688"; model_pct "40.5"; chr7 rmsk exon 33124151 33124418 1343 + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0203"; repClass "LTR"; repEnd "-395"; repFamily "ERV1"; repLeft "-7034"; repStart "-683"; chr7 rmsk exon 33125291 33125784 3580 + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0203"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "-3873"; repStart "2283"; chr7 rmsk exon 33126068 33127024 3580 + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0203"; repClass "LTR"; repEnd "3727"; repFamily "ERV1"; repLeft "-2912"; repStart "2767"; chr7 rmsk exon 33127343 33127544 3580 + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0203"; repClass "LTR"; repEnd "3902"; repFamily "ERV1"; repLeft "-2737"; repStart "3728"; chr7 rmsk exon 33127850 33128321 1862 + . gene_id "MER101_7p14.3"; transcript_id "MER101_7p14.3"; locus "MER101_7p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0203"; repClass "LTR"; repEnd "5358"; repFamily "ERV1"; repLeft "-1281"; repStart "4575"; ### MER41_7p14.3 ### chr7 rmsk gene 33181421 33185349 . - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0256"; model_cov "3709"; model_pct "62.4"; chr7 rmsk exon 33181421 33181801 6341 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0256"; repClass "LTR"; repEnd "3782"; repFamily "ERV1"; repLeft "3415"; repStart "-2164"; chr7 rmsk exon 33182115 33183584 6341 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0256"; repClass "LTR"; repEnd "3133"; repFamily "ERV1"; repLeft "941"; repStart "-2813"; chr7 rmsk exon 33183573 33184097 2945 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0256"; repClass "LTR"; repEnd "1607"; repFamily "ERV1"; repLeft "1092"; repStart "-4339"; chr7 rmsk exon 33184129 33184140 428 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0256"; repClass "LTR"; repEnd "-258"; repFamily "ERV1"; repLeft "-269"; repStart "-6204"; chr7 rmsk exon 33184130 33184711 3181 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0256"; repClass "LTR"; repEnd "630"; repFamily "ERV1"; repLeft "6"; repStart "-5316"; chr7 rmsk exon 33184717 33185349 4529 - . gene_id "MER41_7p14.3"; transcript_id "MER41_7p14.3"; locus "MER41_7p14.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0256"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7p14.3c ### chr7 rmsk gene 33204936 33205853 . - . gene_id "ERVLE_7p14.3c"; transcript_id "ERVLE_7p14.3c"; locus "ERVLE_7p14.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1802"; model_cov "950"; model_pct "16.8"; chr7 rmsk exon 33204936 33205262 780 - . gene_id "ERVLE_7p14.3c"; transcript_id "ERVLE_7p14.3c"; locus "ERVLE_7p14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1802"; repClass "LTR"; repEnd "5134"; repFamily "ERVL"; repLeft "4797"; repStart "-533"; chr7 rmsk exon 33205277 33205853 1232 - . gene_id "ERVLE_7p14.3c"; transcript_id "ERVLE_7p14.3c"; locus "ERVLE_7p14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1802"; repClass "LTR"; repEnd "3906"; repFamily "ERVL"; repLeft "3293"; repStart "-1761"; ### HERVH_7p14.3f ### chr7 rmsk gene 34300132 34305572 . - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0636"; model_cov "4690"; model_pct "60.8"; chr7 rmsk exon 34300132 34300571 3695 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 34300572 34300944 2263 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 34300945 34301161 1284 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 34301163 34301823 4100 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 34301826 34302317 2966 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 34302308 34302455 841 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 34302450 34303128 4169 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2311"; repStart "-4726"; chr7 rmsk exon 34303135 34305131 13432 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "2095"; repFamily "ERV1"; repLeft "1"; repStart "-5618"; chr7 rmsk exon 34305132 34305572 3725 - . gene_id "HERVH_7p14.3f"; transcript_id "HERVH_7p14.3f"; locus "HERVH_7p14.3f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0636"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7p14.3 ### chr7 rmsk gene 34772796 34775289 . - . gene_id "ERV316A3_7p14.3"; transcript_id "ERV316A3_7p14.3"; locus "ERV316A3_7p14.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1370"; model_cov "2423"; model_pct "46.4"; chr7 rmsk exon 34772796 34775289 7846 - . gene_id "ERV316A3_7p14.3"; transcript_id "ERV316A3_7p14.3"; locus "ERV316A3_7p14.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1370"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "2426"; repStart "-377"; ### ERVLE_7p14.2a ### chr7 rmsk gene 35272227 35275771 . - . gene_id "ERVLE_7p14.2a"; transcript_id "ERVLE_7p14.2a"; locus "ERVLE_7p14.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1804"; model_cov "1956"; model_pct "34.5"; chr7 rmsk exon 35272227 35273487 2885 - . gene_id "ERVLE_7p14.2a"; transcript_id "ERVLE_7p14.2a"; locus "ERVLE_7p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1804"; repClass "LTR"; repEnd "3824"; repFamily "ERVL"; repLeft "2514"; repStart "-1843"; chr7 rmsk exon 35275131 35275771 1625 - . gene_id "ERVLE_7p14.2a"; transcript_id "ERVLE_7p14.2a"; locus "ERVLE_7p14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1804"; repClass "LTR"; repEnd "2408"; repFamily "ERVL"; repLeft "1762"; repStart "-3259"; ### ERVLE_7p14.2b ### chr7 rmsk gene 35592268 35594015 . + . gene_id "ERVLE_7p14.2b"; transcript_id "ERVLE_7p14.2b"; locus "ERVLE_7p14.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1805"; model_cov "1625"; model_pct "28.7"; chr7 rmsk exon 35592268 35592396 725 + . gene_id "ERVLE_7p14.2b"; transcript_id "ERVLE_7p14.2b"; locus "ERVLE_7p14.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1805"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "-504"; repStart "19"; chr7 rmsk exon 35592397 35594015 6026 + . gene_id "ERVLE_7p14.2b"; transcript_id "ERVLE_7p14.2b"; locus "ERVLE_7p14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1805"; repClass "LTR"; repEnd "3758"; repFamily "ERVL"; repLeft "-1909"; repStart "2133"; ### ERVLE_7p14.2c ### chr7 rmsk gene 35703423 35704779 . + . gene_id "ERVLE_7p14.2c"; transcript_id "ERVLE_7p14.2c"; locus "ERVLE_7p14.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1806"; model_cov "1261"; model_pct "22.3"; chr7 rmsk exon 35703423 35704442 1629 + . gene_id "ERVLE_7p14.2c"; transcript_id "ERVLE_7p14.2c"; locus "ERVLE_7p14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1806"; repClass "LTR"; repEnd "1132"; repFamily "ERVL"; repLeft "-4535"; repStart "107"; chr7 rmsk exon 35704540 35704689 536 + . gene_id "ERVLE_7p14.2c"; transcript_id "ERVLE_7p14.2c"; locus "ERVLE_7p14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1806"; repClass "LTR"; repEnd "1386"; repFamily "ERVL"; repLeft "-4281"; repStart "1235"; chr7 rmsk exon 35704694 35704779 274 + . gene_id "ERVLE_7p14.2c"; transcript_id "ERVLE_7p14.2c"; locus "ERVLE_7p14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1806"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-1023"; repStart "4559"; ### HML3_7p14.2 ### chr7 rmsk gene 35910279 35912628 . + . gene_id "HML3_7p14.2"; transcript_id "HML3_7p14.2"; locus "HML3_7p14.2"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0116"; model_cov "1834"; model_pct "30.5"; chr7 rmsk exon 35910279 35910686 3390 + . gene_id "HML3_7p14.2"; transcript_id "HML3_7p14.2"; locus "HML3_7p14.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0116"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3546"; chr7 rmsk exon 35910686 35912115 11721 + . gene_id "HML3_7p14.2"; transcript_id "HML3_7p14.2"; locus "HML3_7p14.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0116"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4594"; chr7 rmsk exon 35912116 35912628 4324 + . gene_id "HML3_7p14.2"; transcript_id "HML3_7p14.2"; locus "HML3_7p14.2"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0116"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL18_7p14.2 ### chr7 rmsk gene 36472690 36474452 . - . gene_id "HERVL18_7p14.2"; transcript_id "HERVL18_7p14.2"; locus "HERVL18_7p14.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0082"; model_cov "1416"; model_pct "23.4"; chr7 rmsk exon 36472690 36473033 2871 - . gene_id "HERVL18_7p14.2"; transcript_id "HERVL18_7p14.2"; locus "HERVL18_7p14.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0082"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 36473037 36474452 9677 - . gene_id "HERVL18_7p14.2"; transcript_id "HERVL18_7p14.2"; locus "HERVL18_7p14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0082"; repClass "LTR"; repEnd "6045"; repFamily "ERVL"; repLeft "4629"; repStart "-2"; ### HERV9_7p14.2 ### chr7 rmsk gene 36499269 36505045 . - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0078"; model_cov "4539"; model_pct "53.8"; chr7 rmsk exon 36499269 36499694 3071 - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0078"; repClass "LTR"; repEnd "456"; repFamily "ERV1"; repLeft "1"; repStart "-232"; chr7 rmsk exon 36499695 36500000 2575 - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0078"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "8131"; repStart "0"; chr7 rmsk exon 36500001 36501359 8169 - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0078"; repClass "LTR"; repEnd "8130"; repFamily "ERV1"; repLeft "6875"; repStart "-306"; chr7 rmsk exon 36501359 36504207 16698 - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0078"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "1"; repStart "-5456"; chr7 rmsk exon 36504208 36505045 5891 - . gene_id "HERV9_7p14.2"; transcript_id "HERV9_7p14.2"; locus "HERV9_7p14.2"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0078"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7p14.2d ### chr7 rmsk gene 36771609 36772370 . + . gene_id "ERVLE_7p14.2d"; transcript_id "ERVLE_7p14.2d"; locus "ERVLE_7p14.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1807"; model_cov "812"; model_pct "14.3"; chr7 rmsk exon 36771609 36772069 793 + . gene_id "ERVLE_7p14.2d"; transcript_id "ERVLE_7p14.2d"; locus "ERVLE_7p14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1807"; repClass "LTR"; repEnd "4540"; repFamily "ERVL"; repLeft "-1127"; repStart "3959"; chr7 rmsk exon 36772093 36772178 343 + . gene_id "ERVLE_7p14.2d"; transcript_id "ERVLE_7p14.2d"; locus "ERVLE_7p14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1807"; repClass "LTR"; repEnd "4723"; repFamily "ERVL"; repLeft "-944"; repStart "4634"; chr7 rmsk exon 36772226 36772370 604 + . gene_id "ERVLE_7p14.2d"; transcript_id "ERVLE_7p14.2d"; locus "ERVLE_7p14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1807"; repClass "LTR"; repEnd "4946"; repFamily "ERVL"; repLeft "-721"; repStart "4804"; ### HERV9_7p14.1 ### chr7 rmsk gene 37202715 37205100 . - . gene_id "HERV9_7p14.1"; transcript_id "HERV9_7p14.1"; locus "HERV9_7p14.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0079"; model_cov "1466"; model_pct "17.4"; chr7 rmsk exon 37202715 37204174 11814 - . gene_id "HERV9_7p14.1"; transcript_id "HERV9_7p14.1"; locus "HERV9_7p14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0079"; repClass "LTR"; repEnd "1467"; repFamily "ERV1"; repLeft "1"; repStart "-6969"; chr7 rmsk exon 37204175 37205100 5895 - . gene_id "HERV9_7p14.1"; transcript_id "HERV9_7p14.1"; locus "HERV9_7p14.1"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0079"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "362"; repStart "0"; ### ERVLB4_7p14.1 ### chr7 rmsk gene 37430998 37432319 . + . gene_id "ERVLB4_7p14.1"; transcript_id "ERVLB4_7p14.1"; locus "ERVLB4_7p14.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0786"; model_cov "652"; model_pct "11.4"; chr7 rmsk exon 37430998 37431054 3491 + . gene_id "ERVLB4_7p14.1"; transcript_id "ERVLB4_7p14.1"; locus "ERVLB4_7p14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0786"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-4143"; repStart "1516"; chr7 rmsk exon 37431352 37431856 3491 + . gene_id "ERVLB4_7p14.1"; transcript_id "ERVLB4_7p14.1"; locus "ERVLB4_7p14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0786"; repClass "LTR"; repEnd "2038"; repFamily "ERVL"; repLeft "-3676"; repStart "1572"; chr7 rmsk exon 37432181 37432319 3491 + . gene_id "ERVLB4_7p14.1"; transcript_id "ERVLB4_7p14.1"; locus "ERVLB4_7p14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0786"; repClass "LTR"; repEnd "2170"; repFamily "ERVL"; repLeft "-3544"; repStart "2039"; ### ERVLE_7p14.1a ### chr7 rmsk gene 37655667 37657425 . - . gene_id "ERVLE_7p14.1a"; transcript_id "ERVLE_7p14.1a"; locus "ERVLE_7p14.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1808"; model_cov "1607"; model_pct "28.4"; chr7 rmsk exon 37655667 37656977 3444 - . gene_id "ERVLE_7p14.1a"; transcript_id "ERVLE_7p14.1a"; locus "ERVLE_7p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1808"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "3786"; repStart "-523"; chr7 rmsk exon 37657146 37657425 771 - . gene_id "ERVLE_7p14.1a"; transcript_id "ERVLE_7p14.1a"; locus "ERVLE_7p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1808"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3363"; repStart "-2055"; ### ERVLE_7p14.1b ### chr7 rmsk gene 38128506 38129547 . - . gene_id "ERVLE_7p14.1b"; transcript_id "ERVLE_7p14.1b"; locus "ERVLE_7p14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1809"; model_cov "698"; model_pct "12.3"; chr7 rmsk exon 38128506 38128840 1208 - . gene_id "ERVLE_7p14.1b"; transcript_id "ERVLE_7p14.1b"; locus "ERVLE_7p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1809"; repClass "LTR"; repEnd "1638"; repFamily "ERVL"; repLeft "1304"; repStart "-4029"; chr7 rmsk exon 38129143 38129547 1208 - . gene_id "ERVLE_7p14.1b"; transcript_id "ERVLE_7p14.1b"; locus "ERVLE_7p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1809"; repClass "LTR"; repEnd "1303"; repFamily "ERVL"; repLeft "939"; repStart "-4364"; ### HML5_7p14.1 ### chr7 rmsk gene 38159987 38164084 . + . gene_id "HML5_7p14.1"; transcript_id "HML5_7p14.1"; locus "HML5_7p14.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0056"; model_cov "4904"; model_pct "71.7"; chr7 rmsk exon 38159987 38160463 2778 + . gene_id "HML5_7p14.1"; transcript_id "HML5_7p14.1"; locus "HML5_7p14.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0056"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr7 rmsk exon 38160537 38161785 8579 + . gene_id "HML5_7p14.1"; transcript_id "HML5_7p14.1"; locus "HML5_7p14.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0056"; repClass "LTR"; repEnd "1346"; repFamily "ERVK"; repLeft "-5491"; repStart "91"; chr7 rmsk exon 38161783 38163693 11830 + . gene_id "HML5_7p14.1"; transcript_id "HML5_7p14.1"; locus "HML5_7p14.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0056"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3188"; chr7 rmsk exon 38163694 38164084 2450 + . gene_id "HML5_7p14.1"; transcript_id "HML5_7p14.1"; locus "HML5_7p14.1"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0056"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4B_7p14.1 ### chr7 rmsk gene 39717831 39719693 . - . gene_id "MER4B_7p14.1"; transcript_id "MER4B_7p14.1"; locus "MER4B_7p14.1"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0205"; model_cov "775"; model_pct "11.5"; chr7 rmsk exon 39717831 39718451 4732 - . gene_id "MER4B_7p14.1"; transcript_id "MER4B_7p14.1"; locus "MER4B_7p14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0205"; repClass "LTR"; repEnd "3964"; repFamily "ERV1"; repLeft "3341"; repStart "-2794"; chr7 rmsk exon 39718768 39718920 4732 - . gene_id "MER4B_7p14.1"; transcript_id "MER4B_7p14.1"; locus "MER4B_7p14.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0205"; repClass "LTR"; repEnd "3340"; repFamily "ERV1"; repLeft "3188"; repStart "-3418"; chr7 rmsk exon 39718921 39719693 3670 - . gene_id "MER4B_7p14.1"; transcript_id "MER4B_7p14.1"; locus "MER4B_7p14.1"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0205"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "120"; repStart "0"; ### HERVIP10F_7p14.1 ### chr7 rmsk gene 39759203 39761816 . + . gene_id "HERVIP10F_7p14.1"; transcript_id "HERVIP10F_7p14.1"; locus "HERVIP10F_7p14.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0050"; model_cov "2344"; model_pct "30.3"; chr7 rmsk exon 39759203 39761512 10355 + . gene_id "HERVIP10F_7p14.1"; transcript_id "HERVIP10F_7p14.1"; locus "HERVIP10F_7p14.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0050"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "5393"; chr7 rmsk exon 39761588 39761816 1376 + . gene_id "HERVIP10F_7p14.1"; transcript_id "HERVIP10F_7p14.1"; locus "HERVIP10F_7p14.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0050"; repClass "LTR"; repEnd "413"; repFamily "ERV1"; repLeft "-134"; repStart "184"; ### ERVLE_7p14.1c ### chr7 rmsk gene 39916478 39918529 . - . gene_id "ERVLE_7p14.1c"; transcript_id "ERVLE_7p14.1c"; locus "ERVLE_7p14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1811"; model_cov "1916"; model_pct "33.8"; chr7 rmsk exon 39916478 39918127 2711 - . gene_id "ERVLE_7p14.1c"; transcript_id "ERVLE_7p14.1c"; locus "ERVLE_7p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1811"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "3380"; repStart "-449"; chr7 rmsk exon 39918440 39918529 2711 - . gene_id "ERVLE_7p14.1c"; transcript_id "ERVLE_7p14.1c"; locus "ERVLE_7p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1811"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "3301"; repStart "-2288"; ### HERVIP10FH_7p14.1 ### chr7 rmsk gene 40141753 40148302 . - . gene_id "HERVIP10FH_7p14.1"; transcript_id "HERVIP10FH_7p14.1"; locus "HERVIP10FH_7p14.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0076"; model_cov "5095"; model_pct "99.9"; chr7 rmsk exon 40141753 40142344 3374 - . gene_id "HERVIP10FH_7p14.1"; transcript_id "HERVIP10FH_7p14.1"; locus "HERVIP10FH_7p14.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0076"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 40142350 40146339 36586 - . gene_id "HERVIP10FH_7p14.1"; transcript_id "HERVIP10FH_7p14.1"; locus "HERVIP10FH_7p14.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0076"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "1120"; repStart "-5"; chr7 rmsk exon 40146823 40147823 36586 - . gene_id "HERVIP10FH_7p14.1"; transcript_id "HERVIP10FH_7p14.1"; locus "HERVIP10FH_7p14.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0076"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "1"; repStart "-3983"; chr7 rmsk exon 40147827 40148302 3347 - . gene_id "HERVIP10FH_7p14.1"; transcript_id "HERVIP10FH_7p14.1"; locus "HERVIP10FH_7p14.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0076"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### HERVW_7p14.1 ### chr7 rmsk gene 40167438 40173763 . - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0161"; model_cov "4386"; model_pct "50.8"; chr7 rmsk exon 40167438 40168223 5543 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 40168227 40168520 2296 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "8620"; repFamily "ERV1"; repLeft "8335"; repStart "-6"; chr7 rmsk exon 40168511 40168548 278 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7511"; repStart "-1078"; chr7 rmsk exon 40168550 40169166 5241 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5405"; repStart "-2607"; chr7 rmsk exon 40169146 40170458 10752 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr7 rmsk exon 40170442 40170779 2736 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1679"; repStart "-6610"; chr7 rmsk exon 40170777 40171093 2481 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "1537"; repStart "-6762"; chr7 rmsk exon 40171276 40172024 5122 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "1534"; repFamily "ERV1"; repLeft "775"; repStart "-7092"; chr7 rmsk exon 40172291 40173002 5175 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "2"; repStart "-7921"; chr7 rmsk exon 40173003 40173763 5304 - . gene_id "HERVW_7p14.1"; transcript_id "HERVW_7p14.1"; locus "HERVW_7p14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0161"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7p14.1a ### chr7 rmsk gene 41279639 41280843 . + . gene_id "ERV316A3_7p14.1a"; transcript_id "ERV316A3_7p14.1a"; locus "ERV316A3_7p14.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1371"; model_cov "566"; model_pct "10.8"; chr7 rmsk exon 41279639 41279864 592 + . gene_id "ERV316A3_7p14.1a"; transcript_id "ERV316A3_7p14.1a"; locus "ERV316A3_7p14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1371"; repClass "LTR"; repEnd "4693"; repFamily "ERVL"; repLeft "-533"; repStart "4463"; chr7 rmsk exon 41279871 41280207 566 + . gene_id "ERV316A3_7p14.1a"; transcript_id "ERV316A3_7p14.1a"; locus "ERV316A3_7p14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1371"; repClass "LTR"; repEnd "5078"; repFamily "ERVL"; repLeft "-148"; repStart "4742"; chr7 rmsk exon 41280420 41280843 1116 + . gene_id "ERV316A3_7p14.1a"; transcript_id "ERV316A3_7p14.1a"; locus "ERV316A3_7p14.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1371"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### PRIMA41_7p14.1a ### chr7 rmsk gene 41547054 41549561 . - . gene_id "PRIMA41_7p14.1a"; transcript_id "PRIMA41_7p14.1a"; locus "PRIMA41_7p14.1a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0068"; model_cov "2009"; model_pct "25.9"; chr7 rmsk exon 41547054 41547588 3760 - . gene_id "PRIMA41_7p14.1a"; transcript_id "PRIMA41_7p14.1a"; locus "PRIMA41_7p14.1a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0068"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 41547589 41549561 13282 - . gene_id "PRIMA41_7p14.1a"; transcript_id "PRIMA41_7p14.1a"; locus "PRIMA41_7p14.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0068"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "5747"; repStart "0"; ### PRIMA41_7p14.1b ### chr7 rmsk gene 41553289 41559722 . - . gene_id "PRIMA41_7p14.1b"; transcript_id "PRIMA41_7p14.1b"; locus "PRIMA41_7p14.1b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0069"; model_cov "5754"; model_pct "74.2"; chr7 rmsk exon 41553289 41558903 26224 - . gene_id "PRIMA41_7p14.1b"; transcript_id "PRIMA41_7p14.1b"; locus "PRIMA41_7p14.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0069"; repClass "LTR"; repEnd "5759"; repFamily "ERV1"; repLeft "5"; repStart "-1997"; chr7 rmsk exon 41558908 41559126 3488 - . gene_id "PRIMA41_7p14.1b"; transcript_id "PRIMA41_7p14.1b"; locus "PRIMA41_7p14.1b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0069"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "309"; repStart "0"; chr7 rmsk exon 41559402 41559722 3488 - . gene_id "PRIMA41_7p14.1b"; transcript_id "PRIMA41_7p14.1b"; locus "PRIMA41_7p14.1b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0069"; repClass "LTR"; repEnd "308"; repFamily "ERV1"; repLeft "1"; repStart "-213"; ### MER41_7p14.1a ### chr7 rmsk gene 41745785 41751231 . - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0257"; model_cov "4520"; model_pct "76.0"; chr7 rmsk exon 41745785 41746205 2492 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0257"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "204"; repStart "0"; chr7 rmsk exon 41746211 41747193 13966 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0257"; repClass "LTR"; repEnd "4763"; repFamily "ERV1"; repLeft "3808"; repStart "-1183"; chr7 rmsk exon 41747504 41748443 13966 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0257"; repClass "LTR"; repEnd "3807"; repFamily "ERV1"; repLeft "2855"; repStart "-2139"; chr7 rmsk exon 41748723 41749480 13966 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0257"; repClass "LTR"; repEnd "2854"; repFamily "ERV1"; repLeft "2168"; repStart "-3092"; chr7 rmsk exon 41749477 41749629 886 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0257"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "885"; repStart "-4908"; chr7 rmsk exon 41749617 41750624 3401 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0257"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "1"; repStart "-4171"; chr7 rmsk exon 41750625 41751231 4156 - . gene_id "MER41_7p14.1a"; transcript_id "MER41_7p14.1a"; locus "MER41_7p14.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0257"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_7p14.1 ### chr7 rmsk gene 41754307 41757785 . - . gene_id "PABLA_7p14.1"; transcript_id "PABLA_7p14.1"; locus "PABLA_7p14.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0068"; model_cov "4400"; model_pct "87.7"; chr7 rmsk exon 41754307 41754590 1991 - . gene_id "PABLA_7p14.1"; transcript_id "PABLA_7p14.1"; locus "PABLA_7p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0068"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4730"; repStart "-2"; chr7 rmsk exon 41754591 41756107 12655 - . gene_id "PABLA_7p14.1"; transcript_id "PABLA_7p14.1"; locus "PABLA_7p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0068"; repClass "LTR"; repEnd "4514"; repFamily "ERV1"; repLeft "2190"; repStart "-501"; chr7 rmsk exon 41756404 41757620 12655 - . gene_id "PABLA_7p14.1"; transcript_id "PABLA_7p14.1"; locus "PABLA_7p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0068"; repClass "LTR"; repEnd "2923"; repFamily "ERV1"; repLeft "1278"; repStart "-2092"; chr7 rmsk exon 41757652 41757785 804 - . gene_id "PABLA_7p14.1"; transcript_id "PABLA_7p14.1"; locus "PABLA_7p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0068"; repClass "LTR"; repEnd "1083"; repFamily "ERV1"; repLeft "935"; repStart "-3932"; ### MER41_7p14.1b ### chr7 rmsk gene 41757785 41760009 . - . gene_id "MER41_7p14.1b"; transcript_id "MER41_7p14.1b"; locus "MER41_7p14.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0258"; model_cov "1666"; model_pct "28.0"; chr7 rmsk exon 41757785 41758567 3880 - . gene_id "MER41_7p14.1b"; transcript_id "MER41_7p14.1b"; locus "MER41_7p14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0258"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-36"; repStart "-5166"; chr7 rmsk exon 41758565 41759368 4763 - . gene_id "MER41_7p14.1b"; transcript_id "MER41_7p14.1b"; locus "MER41_7p14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0258"; repClass "LTR"; repEnd "851"; repFamily "ERV1"; repLeft "1"; repStart "-5095"; chr7 rmsk exon 41759455 41760009 4226 - . gene_id "MER41_7p14.1b"; transcript_id "MER41_7p14.1b"; locus "MER41_7p14.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0258"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7p14.1b ### chr7 rmsk gene 41933917 41936920 . + . gene_id "ERV316A3_7p14.1b"; transcript_id "ERV316A3_7p14.1b"; locus "ERV316A3_7p14.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1373"; model_cov "2566"; model_pct "49.1"; chr7 rmsk exon 41933917 41934170 485 + . gene_id "ERV316A3_7p14.1b"; transcript_id "ERV316A3_7p14.1b"; locus "ERV316A3_7p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1373"; repClass "LTR"; repEnd "1355"; repFamily "ERVL"; repLeft "-3871"; repStart "1096"; chr7 rmsk exon 41934196 41936450 5291 + . gene_id "ERV316A3_7p14.1b"; transcript_id "ERV316A3_7p14.1b"; locus "ERV316A3_7p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1373"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "-33"; repStart "2886"; chr7 rmsk exon 41936495 41936920 1073 + . gene_id "ERV316A3_7p14.1b"; transcript_id "ERV316A3_7p14.1b"; locus "ERV316A3_7p14.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1373"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "2"; ### LTR57_7p14.1 ### chr7 rmsk gene 42545810 42547126 . - . gene_id "LTR57_7p14.1"; transcript_id "LTR57_7p14.1"; locus "LTR57_7p14.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0084"; model_cov "1284"; model_pct "24.0"; chr7 rmsk exon 42545810 42547126 6365 - . gene_id "LTR57_7p14.1"; transcript_id "LTR57_7p14.1"; locus "LTR57_7p14.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0084"; repClass "LTR"; repEnd "1587"; repFamily "ERVL"; repLeft "303"; repStart "-3756"; ### HML3_7p14.1 ### chr7 rmsk gene 42636040 42637107 . + . gene_id "HML3_7p14.1"; transcript_id "HML3_7p14.1"; locus "HML3_7p14.1"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0117"; model_cov "1074"; model_pct "17.8"; chr7 rmsk exon 42636040 42636320 2195 + . gene_id "HML3_7p14.1"; transcript_id "HML3_7p14.1"; locus "HML3_7p14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0117"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "315"; chr7 rmsk exon 42636323 42637107 6263 + . gene_id "HML3_7p14.1"; transcript_id "HML3_7p14.1"; locus "HML3_7p14.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0117"; repClass "LTR"; repEnd "2067"; repFamily "ERVK"; repLeft "-3954"; repStart "1282"; ### HERVH_7p14.1 ### chr7 rmsk gene 42870576 42876404 . - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0637"; model_cov "4916"; model_pct "63.7"; chr7 rmsk exon 42870576 42871056 3515 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 42871057 42871426 2606 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 42871425 42871640 1450 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 42871642 42872304 4411 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 42872307 42872811 3475 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 42872802 42872951 959 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 42872931 42875921 20889 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 42875924 42876404 3533 - . gene_id "HERVH_7p14.1"; transcript_id "HERVH_7p14.1"; locus "HERVH_7p14.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0637"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL74_7p14.1 ### chr7 rmsk gene 42889719 42892557 . + . gene_id "HERVL74_7p14.1"; transcript_id "HERVL74_7p14.1"; locus "HERVL74_7p14.1"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0042"; model_cov "3123"; model_pct "54.9"; chr7 rmsk exon 42889719 42891765 4753 + . gene_id "HERVL74_7p14.1"; transcript_id "HERVL74_7p14.1"; locus "HERVL74_7p14.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0042"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-2353"; repStart "1085"; chr7 rmsk exon 42891763 42891929 845 + . gene_id "HERVL74_7p14.1"; transcript_id "HERVL74_7p14.1"; locus "HERVL74_7p14.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0042"; repClass "LTR"; repEnd "3650"; repFamily "ERVL"; repLeft "-2035"; repStart "3483"; chr7 rmsk exon 42891928 42892083 960 + . gene_id "HERVL74_7p14.1"; transcript_id "HERVL74_7p14.1"; locus "HERVL74_7p14.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0042"; repClass "LTR"; repEnd "4072"; repFamily "ERVL"; repLeft "-1613"; repStart "3918"; chr7 rmsk exon 42892073 42892557 951 + . gene_id "HERVL74_7p14.1"; transcript_id "HERVL74_7p14.1"; locus "HERVL74_7p14.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0042"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "-544"; repStart "4586"; ### MER61_7p14.1 ### chr7 rmsk gene 43071466 43078048 . - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0205"; model_cov "4342"; model_pct "83.2"; chr7 rmsk exon 43071466 43071785 1583 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0205"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 43071786 43072461 23452 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0205"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4496"; repStart "0"; chr7 rmsk exon 43072989 43073824 23452 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0205"; repClass "LTR"; repEnd "4495"; repFamily "ERV1"; repLeft "3663"; repStart "-722"; chr7 rmsk exon 43074358 43076362 23452 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0205"; repClass "LTR"; repEnd "3662"; repFamily "ERV1"; repLeft "1664"; repStart "-1555"; chr7 rmsk exon 43076934 43077150 1280 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0205"; repClass "LTR"; repEnd "1621"; repFamily "ERV1"; repLeft "1396"; repStart "-3596"; chr7 rmsk exon 43077131 43077721 2434 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0205"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "1"; repStart "-4650"; chr7 rmsk exon 43077722 43078048 1871 - . gene_id "MER61_7p14.1"; transcript_id "MER61_7p14.1"; locus "MER61_7p14.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0205"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_7p13 ### chr7 rmsk gene 43666199 43669761 . + . gene_id "HUERSP3B_7p13"; transcript_id "HUERSP3B_7p13"; locus "HUERSP3B_7p13"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0071"; model_cov "4526"; model_pct "61.0"; chr7 rmsk exon 43666199 43669213 14382 + . gene_id "HUERSP3B_7p13"; transcript_id "HUERSP3B_7p13"; locus "HUERSP3B_7p13"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0071"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "2891"; chr7 rmsk exon 43669214 43669761 3401 + . gene_id "HUERSP3B_7p13"; transcript_id "HUERSP3B_7p13"; locus "HUERSP3B_7p13"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0071"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-84"; repStart "1"; ### HML6_7p13 ### chr7 rmsk gene 43808543 43809894 . + . gene_id "HML6_7p13"; transcript_id "HML6_7p13"; locus "HML6_7p13"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0043"; model_cov "865"; model_pct "12.0"; chr7 rmsk exon 43808543 43809016 3049 + . gene_id "HML6_7p13"; transcript_id "HML6_7p13"; locus "HML6_7p13"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0043"; repClass "LTR"; repEnd "480"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr7 rmsk exon 43809022 43809894 5604 + . gene_id "HML6_7p13"; transcript_id "HML6_7p13"; locus "HML6_7p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0043"; repClass "LTR"; repEnd "866"; repFamily "ERVK"; repLeft "-6336"; repStart "1"; ### HERVIP10F_7p13 ### chr7 rmsk gene 43810212 43812640 . + . gene_id "HERVIP10F_7p13"; transcript_id "HERVIP10F_7p13"; locus "HERVIP10F_7p13"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0051"; model_cov "1913"; model_pct "24.7"; chr7 rmsk exon 43810212 43810659 3197 + . gene_id "HERVIP10F_7p13"; transcript_id "HERVIP10F_7p13"; locus "HERVIP10F_7p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0051"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 43810660 43812640 12522 + . gene_id "HERVIP10F_7p13"; transcript_id "HERVIP10F_7p13"; locus "HERVIP10F_7p13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0051"; repClass "LTR"; repEnd "1914"; repFamily "ERV1"; repLeft "-5823"; repStart "1"; ### HERVIP10FH_7p13 ### chr7 rmsk gene 43812642 43823897 . + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; category "mergeable*"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0079"; model_cov "3507"; model_pct "68.7"; chr7 rmsk exon 43812642 43813049 2725 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "1264"; repFamily "ERV1"; repLeft "-3838"; repStart "835"; chr7 rmsk exon 43813049 43813261 1642 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "1595"; repFamily "ERV1"; repLeft "-3507"; repStart "1382"; chr7 rmsk exon 43813264 43813732 3234 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr7 rmsk exon 43813733 43815450 8282 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "-1207"; repFamily "ERV1"; repLeft "-6309"; repStart "-2634"; chr7 rmsk exon 43815450 43819534 21180 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "687"; chr7 rmsk exon 43819535 43819976 2984 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 43819977 43823448 28037 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "1593"; chr7 rmsk exon 43823451 43823897 3051 + . gene_id "HERVIP10FH_7p13"; transcript_id "HERVIP10FH_7p13"; locus "HERVIP10FH_7p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0079"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP1_7p13 ### chr7 rmsk gene 43826611 43832906 . + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0088"; model_cov "4864"; model_pct "77.7"; chr7 rmsk exon 43826611 43829582 23205 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-3254"; repStart "16"; chr7 rmsk exon 43829668 43829794 1020 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "4332"; repFamily "ERV1"; repLeft "-1931"; repStart "4206"; chr7 rmsk exon 43829788 43829944 13760 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "4671"; repFamily "ERV1"; repLeft "-1592"; repStart "4516"; chr7 rmsk exon 43830253 43830639 13760 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "-1201"; repStart "4672"; chr7 rmsk exon 43830940 43832163 13760 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5063"; chr7 rmsk exon 43832164 43832906 5163 + . gene_id "HUERSP1_7p13"; transcript_id "HUERSP1_7p13"; locus "HUERSP1_7p13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0088"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_7p13 ### chr7 rmsk gene 43859699 43864985 . - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0118"; model_cov "4309"; model_pct "71.6"; chr7 rmsk exon 43859699 43860193 3888 - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0118"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 43860194 43862028 14576 - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0118"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4185"; repStart "0"; chr7 rmsk exon 43862024 43863906 14956 - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0118"; repClass "LTR"; repEnd "3211"; repFamily "ERVK"; repLeft "1360"; repStart "-2810"; chr7 rmsk exon 43863874 43864492 4755 - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0118"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr7 rmsk exon 43864493 43864985 3506 - . gene_id "HML3_7p13"; transcript_id "HML3_7p13"; locus "HML3_7p13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0118"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER61_7p13 ### chr7 rmsk gene 43914879 43917749 . + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0206"; model_cov "1497"; model_pct "28.7"; chr7 rmsk exon 43914879 43915257 2277 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0206"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "114"; chr7 rmsk exon 43915258 43915410 590 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "-5068"; repStart "2"; chr7 rmsk exon 43915542 43915726 967 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-4871"; repStart "182"; chr7 rmsk exon 43916021 43916114 967 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-4763"; repStart "347"; chr7 rmsk exon 43916119 43916167 729 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "-1133"; repFamily "ERV1"; repLeft "-6350"; repStart "-1179"; chr7 rmsk exon 43916247 43917650 5167 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "4918"; repFamily "ERV1"; repLeft "-299"; repStart "3991"; chr7 rmsk exon 43917644 43917749 761 + . gene_id "MER61_7p13"; transcript_id "MER61_7p13"; locus "MER61_7p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0206"; repClass "LTR"; repEnd "1004"; repFamily "ERV1"; repLeft "-4213"; repStart "898"; ### LTR25_7p13 ### chr7 rmsk gene 43920222 43921624 . + . gene_id "LTR25_7p13"; transcript_id "LTR25_7p13"; locus "LTR25_7p13"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0061"; model_cov "792"; model_pct "11.0"; chr7 rmsk exon 43920222 43920283 1635 + . gene_id "LTR25_7p13"; transcript_id "LTR25_7p13"; locus "LTR25_7p13"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0061"; repClass "LTR"; repEnd "3029"; repFamily "ERV1"; repLeft "-4159"; repStart "2968"; chr7 rmsk exon 43920579 43921044 3905 + . gene_id "LTR25_7p13"; transcript_id "LTR25_7p13"; locus "LTR25_7p13"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0061"; repClass "LTR"; repEnd "4264"; repFamily "ERV1"; repLeft "-2924"; repStart "3803"; chr7 rmsk exon 43921346 43921624 3905 + . gene_id "LTR25_7p13"; transcript_id "LTR25_7p13"; locus "LTR25_7p13"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0061"; repClass "LTR"; repEnd "4535"; repFamily "ERV1"; repLeft "-2653"; repStart "4265"; ### HERVL_7p13 ### chr7 rmsk gene 44177920 44182852 . + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0678"; model_cov "4314"; model_pct "76.3"; chr7 rmsk exon 44177920 44178387 708 + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0678"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "-4490"; repStart "664"; chr7 rmsk exon 44178602 44179847 1492 + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0678"; repClass "LTR"; repEnd "2611"; repFamily "ERVL"; repLeft "-3043"; repStart "1239"; chr7 rmsk exon 44180150 44180506 1289 + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0678"; repClass "LTR"; repEnd "2990"; repFamily "ERVL"; repLeft "-2664"; repStart "2612"; chr7 rmsk exon 44180856 44182014 2232 + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0678"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "-1216"; repStart "3222"; chr7 rmsk exon 44182013 44182852 1902 + . gene_id "HERVL_7p13"; transcript_id "HERVL_7p13"; locus "HERVL_7p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0678"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4806"; ### HERVFRD_7p13 ### chr7 rmsk gene 44717448 44722427 . - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; category "internal"; intModel "MER50-int"; locid "MER50-int_0081"; model_cov "2871"; model_pct "39.8"; chr7 rmsk exon 44717448 44717666 5621 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "7203"; repFamily "ERV1"; repLeft "6985"; repStart "-2"; chr7 rmsk exon 44718264 44718818 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "6093"; repFamily "ERV1"; repLeft "5136"; repStart "-1112"; chr7 rmsk exon 44719083 44719228 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "5674"; repFamily "ERV1"; repLeft "5517"; repStart "-1531"; chr7 rmsk exon 44720016 44720082 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "5507"; repFamily "ERV1"; repLeft "5375"; repStart "-1698"; chr7 rmsk exon 44720366 44721344 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "5374"; repFamily "ERV1"; repLeft "4433"; repStart "-1831"; chr7 rmsk exon 44721645 44721675 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "4432"; repFamily "ERV1"; repLeft "4423"; repStart "-2773"; chr7 rmsk exon 44721989 44722427 7232 - . gene_id "HERVFRD_7p13"; transcript_id "HERVFRD_7p13"; locus "HERVFRD_7p13"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0081"; repClass "LTR"; repEnd "4422"; repFamily "ERV1"; repLeft "3965"; repStart "-2783"; ### ERV316A3_7p13a ### chr7 rmsk gene 45050816 45054421 . - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1376"; model_cov "2485"; model_pct "47.6"; chr7 rmsk exon 45050816 45050999 381 - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1376"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "247"; repStart "0"; chr7 rmsk exon 45051290 45051383 682 - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1376"; repClass "LTR"; repEnd "4170"; repFamily "ERVL"; repLeft "4132"; repStart "-1056"; chr7 rmsk exon 45051990 45052332 682 - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1376"; repClass "LTR"; repEnd "4131"; repFamily "ERVL"; repLeft "3598"; repStart "-1095"; chr7 rmsk exon 45052523 45054121 1788 - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1376"; repClass "LTR"; repEnd "2876"; repFamily "ERVL"; repLeft "1097"; repStart "-2350"; chr7 rmsk exon 45054289 45054421 438 - . gene_id "ERV316A3_7p13a"; transcript_id "ERV316A3_7p13a"; locus "ERV316A3_7p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1376"; repClass "LTR"; repEnd "877"; repFamily "ERVL"; repLeft "742"; repStart "-4349"; ### ERV316A3_7p13b ### chr7 rmsk gene 45150983 45151618 . - . gene_id "ERV316A3_7p13b"; transcript_id "ERV316A3_7p13b"; locus "ERV316A3_7p13b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1377"; model_cov "741"; model_pct "14.2"; chr7 rmsk exon 45150983 45151100 256 - . gene_id "ERV316A3_7p13b"; transcript_id "ERV316A3_7p13b"; locus "ERV316A3_7p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1377"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "5002"; repStart "-81"; chr7 rmsk exon 45151131 45151618 719 - . gene_id "ERV316A3_7p13b"; transcript_id "ERV316A3_7p13b"; locus "ERV316A3_7p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1377"; repClass "LTR"; repEnd "4922"; repFamily "ERVL"; repLeft "4324"; repStart "-304"; ### ERVLB4_7p13 ### chr7 rmsk gene 45253743 45256732 . - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0791"; model_cov "1301"; model_pct "22.8"; chr7 rmsk exon 45253743 45253809 3889 - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0791"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "1244"; repStart "-4413"; chr7 rmsk exon 45254102 45254402 3889 - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0791"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "943"; repStart "-4471"; chr7 rmsk exon 45254707 45255021 3889 - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0791"; repClass "LTR"; repEnd "942"; repFamily "ERVL"; repLeft "587"; repStart "-4772"; chr7 rmsk exon 45255666 45256290 3125 - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0791"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "1"; repStart "-5124"; chr7 rmsk exon 45256382 45256732 2250 - . gene_id "ERVLB4_7p13"; transcript_id "ERVLB4_7p13"; locus "ERVLB4_7p13"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0791"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "-126"; repStart "-62"; ### MER4_7p13 ### chr7 rmsk gene 45288992 45290711 . + . gene_id "MER4_7p13"; transcript_id "MER4_7p13"; locus "MER4_7p13"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0375"; model_cov "1288"; model_pct "19.5"; chr7 rmsk exon 45288992 45289034 335 + . gene_id "MER4_7p13"; transcript_id "MER4_7p13"; locus "MER4_7p13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0375"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "-429"; repStart "1"; chr7 rmsk exon 45289035 45290258 7097 + . gene_id "MER4_7p13"; transcript_id "MER4_7p13"; locus "MER4_7p13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0375"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5308"; chr7 rmsk exon 45290259 45290711 3285 + . gene_id "MER4_7p13"; transcript_id "MER4_7p13"; locus "MER4_7p13"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0375"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7p12.3a ### chr7 rmsk gene 45468677 45471314 . + . gene_id "ERVLB4_7p12.3a"; transcript_id "ERVLB4_7p12.3a"; locus "ERVLB4_7p12.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0792"; model_cov "1863"; model_pct "32.6"; chr7 rmsk exon 45468677 45468705 9570 + . gene_id "ERVLB4_7p12.3a"; transcript_id "ERVLB4_7p12.3a"; locus "ERVLB4_7p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0792"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-2309"; repStart "3377"; chr7 rmsk exon 45469063 45470798 9570 + . gene_id "ERVLB4_7p12.3a"; transcript_id "ERVLB4_7p12.3a"; locus "ERVLB4_7p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0792"; repClass "LTR"; repEnd "5192"; repFamily "ERVL"; repLeft "-522"; repStart "3406"; chr7 rmsk exon 45470847 45470896 287 + . gene_id "ERVLB4_7p12.3a"; transcript_id "ERVLB4_7p12.3a"; locus "ERVLB4_7p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0792"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5663"; chr7 rmsk exon 45470902 45471314 1839 + . gene_id "ERVLB4_7p12.3a"; transcript_id "ERVLB4_7p12.3a"; locus "ERVLB4_7p12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0792"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HERVL_7p12.3a ### chr7 rmsk gene 45545744 45548737 . - . gene_id "HERVL_7p12.3a"; transcript_id "HERVL_7p12.3a"; locus "HERVL_7p12.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0680"; model_cov "1915"; model_pct "33.9"; chr7 rmsk exon 45545744 45547623 17533 - . gene_id "HERVL_7p12.3a"; transcript_id "HERVL_7p12.3a"; locus "HERVL_7p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0680"; repClass "LTR"; repEnd "2267"; repFamily "ERVL"; repLeft "352"; repStart "-3387"; chr7 rmsk exon 45547684 45547696 17533 - . gene_id "HERVL_7p12.3a"; transcript_id "HERVL_7p12.3a"; locus "HERVL_7p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0680"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "351"; repStart "-5303"; chr7 rmsk exon 45548297 45548737 3479 - . gene_id "HERVL_7p12.3a"; transcript_id "HERVL_7p12.3a"; locus "HERVL_7p12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0680"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_7p12.3b ### chr7 rmsk gene 45549395 45552820 . + . gene_id "HERVL_7p12.3b"; transcript_id "HERVL_7p12.3b"; locus "HERVL_7p12.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0683"; model_cov "3114"; model_pct "55.1"; chr7 rmsk exon 45549395 45552506 25933 + . gene_id "HERVL_7p12.3b"; transcript_id "HERVL_7p12.3b"; locus "HERVL_7p12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0683"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2540"; chr7 rmsk exon 45552507 45552820 2418 + . gene_id "HERVL_7p12.3b"; transcript_id "HERVL_7p12.3b"; locus "HERVL_7p12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0683"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "-124"; repStart "1"; ### ERVLB4_7p12.3b ### chr7 rmsk gene 45683033 45683921 . - . gene_id "ERVLB4_7p12.3b"; transcript_id "ERVLB4_7p12.3b"; locus "ERVLB4_7p12.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0793"; model_cov "940"; model_pct "16.5"; chr7 rmsk exon 45683033 45683921 2520 - . gene_id "ERVLB4_7p12.3b"; transcript_id "ERVLB4_7p12.3b"; locus "ERVLB4_7p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0793"; repClass "LTR"; repEnd "4131"; repFamily "ERVL"; repLeft "3191"; repStart "-1583"; ### ERVLB4_7p12.3c ### chr7 rmsk gene 45894628 45897723 . - . gene_id "ERVLB4_7p12.3c"; transcript_id "ERVLB4_7p12.3c"; locus "ERVLB4_7p12.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0794"; model_cov "2198"; model_pct "38.5"; chr7 rmsk exon 45894628 45894896 1873 - . gene_id "ERVLB4_7p12.3c"; transcript_id "ERVLB4_7p12.3c"; locus "ERVLB4_7p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0794"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "2261"; repStart "-3184"; chr7 rmsk exon 45894891 45896733 10703 - . gene_id "ERVLB4_7p12.3c"; transcript_id "ERVLB4_7p12.3c"; locus "ERVLB4_7p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0794"; repClass "LTR"; repEnd "1977"; repFamily "ERVL"; repLeft "48"; repStart "-3737"; chr7 rmsk exon 45897317 45897723 1938 - . gene_id "ERVLB4_7p12.3c"; transcript_id "ERVLB4_7p12.3c"; locus "ERVLB4_7p12.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0794"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML3_7p12.3a ### chr7 rmsk gene 46038208 46043831 . - . gene_id "HML3_7p12.3a"; transcript_id "HML3_7p12.3a"; locus "HML3_7p12.3a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0120"; model_cov "5230"; model_pct "86.9"; chr7 rmsk exon 46038208 46038699 3906 - . gene_id "HML3_7p12.3a"; transcript_id "HML3_7p12.3a"; locus "HML3_7p12.3a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0120"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 46038700 46043831 38833 - . gene_id "HML3_7p12.3a"; transcript_id "HML3_7p12.3a"; locus "HML3_7p12.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0120"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "791"; repStart "0"; ### HML3_7p12.3b ### chr7 rmsk gene 46043889 46045152 . - . gene_id "HML3_7p12.3b"; transcript_id "HML3_7p12.3b"; locus "HML3_7p12.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0121"; model_cov "789"; model_pct "13.1"; chr7 rmsk exon 46043889 46044661 38833 - . gene_id "HML3_7p12.3b"; transcript_id "HML3_7p12.3b"; locus "HML3_7p12.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0121"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5232"; repStart "0"; chr7 rmsk exon 46044662 46045152 4085 - . gene_id "HML3_7p12.3b"; transcript_id "HML3_7p12.3b"; locus "HML3_7p12.3b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0121"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_7p12.3 ### chr7 rmsk gene 46463467 46471647 . - . gene_id "HUERSP3_7p12.3"; transcript_id "HUERSP3_7p12.3"; locus "HUERSP3_7p12.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0087"; model_cov "7138"; model_pct "80.0"; chr7 rmsk exon 46463467 46469613 26312 - . gene_id "HUERSP3_7p12.3"; transcript_id "HUERSP3_7p12.3"; locus "HUERSP3_7p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0087"; repClass "LTR"; repEnd "6958"; repFamily "ERV1"; repLeft "762"; repStart "-1961"; chr7 rmsk exon 46470003 46470393 9831 - . gene_id "HUERSP3_7p12.3"; transcript_id "HUERSP3_7p12.3"; locus "HUERSP3_7p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0087"; repClass "LTR"; repEnd "2609"; repFamily "ERV1"; repLeft "2229"; repStart "-6310"; chr7 rmsk exon 46470393 46470945 2588 - . gene_id "HUERSP3_7p12.3"; transcript_id "HUERSP3_7p12.3"; locus "HUERSP3_7p12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0087"; repClass "LTR"; repEnd "2338"; repFamily "ERV1"; repLeft "1776"; repStart "-6581"; chr7 rmsk exon 46471594 46471647 297 - . gene_id "HUERSP3_7p12.3"; transcript_id "HUERSP3_7p12.3"; locus "HUERSP3_7p12.3"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0087"; repClass "LTR"; repEnd "155"; repFamily "ERV1"; repLeft "103"; repStart "-490"; ### ERVLE_7p12.3 ### chr7 rmsk gene 46515872 46517250 . - . gene_id "ERVLE_7p12.3"; transcript_id "ERVLE_7p12.3"; locus "ERVLE_7p12.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1815"; model_cov "1037"; model_pct "18.3"; chr7 rmsk exon 46515872 46516672 1373 - . gene_id "ERVLE_7p12.3"; transcript_id "ERVLE_7p12.3"; locus "ERVLE_7p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1815"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "2899"; repStart "-1945"; chr7 rmsk exon 46517048 46517250 408 - . gene_id "ERVLE_7p12.3"; transcript_id "ERVLE_7p12.3"; locus "ERVLE_7p12.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1815"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "2562"; repStart "-2891"; ### MER41_7p12.3 ### chr7 rmsk gene 46522688 46529624 . + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0260"; model_cov "5940"; model_pct "99.9"; chr7 rmsk exon 46522688 46522747 315 + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0260"; repClass "LTR"; repEnd "-53"; repFamily "ERV1"; repLeft "-574"; repStart "-112"; chr7 rmsk exon 46522752 46522907 934 + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0260"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "370"; chr7 rmsk exon 46522909 46527851 34806 + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0260"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "-935"; repStart "2"; chr7 rmsk exon 46528125 46529054 34806 + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0260"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "5012"; chr7 rmsk exon 46529058 46529624 2434 + . gene_id "MER41_7p12.3"; transcript_id "MER41_7p12.3"; locus "MER41_7p12.3"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0260"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7p12.3d ### chr7 rmsk gene 46653888 46660477 . - . gene_id "ERVLB4_7p12.3d"; transcript_id "ERVLB4_7p12.3d"; locus "ERVLB4_7p12.3d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0795"; model_cov "5690"; model_pct "99.6"; chr7 rmsk exon 46653888 46654365 1495 - . gene_id "ERVLB4_7p12.3d"; transcript_id "ERVLB4_7p12.3d"; locus "ERVLB4_7p12.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0795"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 46654366 46659982 29499 - . gene_id "ERVLB4_7p12.3d"; transcript_id "ERVLB4_7p12.3d"; locus "ERVLB4_7p12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0795"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "24"; repStart "0"; chr7 rmsk exon 46660045 46660477 1590 - . gene_id "ERVLB4_7p12.3d"; transcript_id "ERVLB4_7p12.3d"; locus "ERVLB4_7p12.3d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0795"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-61"; ### HUERSP1_7p12.3a ### chr7 rmsk gene 46768071 46770455 . + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0089"; model_cov "1403"; model_pct "22.4"; chr7 rmsk exon 46768071 46768215 921 + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0089"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "547"; chr7 rmsk exon 46768216 46768799 7213 + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0089"; repClass "LTR"; repEnd "626"; repFamily "ERV1"; repLeft "-5637"; repStart "1"; chr7 rmsk exon 46769170 46769232 7213 + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0089"; repClass "LTR"; repEnd "682"; repFamily "ERV1"; repLeft "-5581"; repStart "627"; chr7 rmsk exon 46769678 46770240 7213 + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0089"; repClass "LTR"; repEnd "1235"; repFamily "ERV1"; repLeft "-5028"; repStart "683"; chr7 rmsk exon 46770285 46770455 7213 + . gene_id "HUERSP1_7p12.3a"; transcript_id "HUERSP1_7p12.3a"; locus "HUERSP1_7p12.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0089"; repClass "LTR"; repEnd "1407"; repFamily "ERV1"; repLeft "-4856"; repStart "1236"; ### HUERSP2_7p12.3 ### chr7 rmsk gene 47596039 47600882 . + . gene_id "HUERSP2_7p12.3"; transcript_id "HUERSP2_7p12.3"; locus "HUERSP2_7p12.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0066"; model_cov "3085"; model_pct "99.9"; chr7 rmsk exon 47596039 47596181 4894 + . gene_id "HUERSP2_7p12.3"; transcript_id "HUERSP2_7p12.3"; locus "HUERSP2_7p12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0066"; repClass "LTR"; repEnd "226"; repFamily "ERV1"; repLeft "-611"; repStart "80"; chr7 rmsk exon 47596505 47597140 4894 + . gene_id "HUERSP2_7p12.3"; transcript_id "HUERSP2_7p12.3"; locus "HUERSP2_7p12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0066"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "227"; chr7 rmsk exon 47597141 47600035 13879 + . gene_id "HUERSP2_7p12.3"; transcript_id "HUERSP2_7p12.3"; locus "HUERSP2_7p12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0066"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 47600038 47600882 5653 + . gene_id "HUERSP2_7p12.3"; transcript_id "HUERSP2_7p12.3"; locus "HUERSP2_7p12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0066"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_7p12.3 ### chr7 rmsk gene 48119468 48121414 . + . gene_id "MER34B_7p12.3"; transcript_id "MER34B_7p12.3"; locus "MER34B_7p12.3"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0135"; model_cov "1130"; model_pct "21.1"; chr7 rmsk exon 48119468 48119805 2019 + . gene_id "MER34B_7p12.3"; transcript_id "MER34B_7p12.3"; locus "MER34B_7p12.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0135"; repClass "LTR"; repEnd "1580"; repFamily "ERV1"; repLeft "-3776"; repStart "1244"; chr7 rmsk exon 48120105 48120568 2019 + . gene_id "MER34B_7p12.3"; transcript_id "MER34B_7p12.3"; locus "MER34B_7p12.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0135"; repClass "LTR"; repEnd "2046"; repFamily "ERV1"; repLeft "-3310"; repStart "1581"; chr7 rmsk exon 48121082 48121414 2019 + . gene_id "MER34B_7p12.3"; transcript_id "MER34B_7p12.3"; locus "MER34B_7p12.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0135"; repClass "LTR"; repEnd "2376"; repFamily "ERV1"; repLeft "-2980"; repStart "2047"; ### MER61_7p12.3a ### chr7 rmsk gene 48134332 48135411 . - . gene_id "MER61_7p12.3a"; transcript_id "MER61_7p12.3a"; locus "MER61_7p12.3a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0208"; model_cov "1002"; model_pct "19.2"; chr7 rmsk exon 48134332 48134575 1537 - . gene_id "MER61_7p12.3a"; transcript_id "MER61_7p12.3a"; locus "MER61_7p12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0208"; repClass "LTR"; repEnd "3589"; repFamily "ERV1"; repLeft "3105"; repStart "-1628"; chr7 rmsk exon 48134883 48135039 1537 - . gene_id "MER61_7p12.3a"; transcript_id "MER61_7p12.3a"; locus "MER61_7p12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0208"; repClass "LTR"; repEnd "3383"; repFamily "ERV1"; repLeft "3300"; repStart "-1834"; chr7 rmsk exon 48135039 48135411 1922 - . gene_id "MER61_7p12.3a"; transcript_id "MER61_7p12.3a"; locus "MER61_7p12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0208"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "2210"; repStart "-2572"; ### HML5_7p12.3 ### chr7 rmsk gene 48140030 48144674 . + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0060"; model_cov "5487"; model_pct "80.3"; chr7 rmsk exon 48140030 48140481 3617 + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0060"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr7 rmsk exon 48140482 48141274 4794 + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0060"; repClass "LTR"; repEnd "811"; repFamily "ERVK"; repLeft "-6026"; repStart "1"; chr7 rmsk exon 48141269 48142304 7337 + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0060"; repClass "LTR"; repEnd "3358"; repFamily "ERVK"; repLeft "-3479"; repStart "2328"; chr7 rmsk exon 48142304 48144206 12701 + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0060"; repClass "LTR"; repEnd "6828"; repFamily "ERVK"; repLeft "-9"; repStart "3181"; chr7 rmsk exon 48144242 48144674 3503 + . gene_id "HML5_7p12.3"; transcript_id "HML5_7p12.3"; locus "HML5_7p12.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0060"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_7p12.3e ### chr7 rmsk gene 48167972 48170161 . + . gene_id "ERVLB4_7p12.3e"; transcript_id "ERVLB4_7p12.3e"; locus "ERVLB4_7p12.3e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0798"; model_cov "1167"; model_pct "20.4"; chr7 rmsk exon 48167972 48168519 2510 + . gene_id "ERVLB4_7p12.3e"; transcript_id "ERVLB4_7p12.3e"; locus "ERVLB4_7p12.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0798"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "-1"; repStart "3"; chr7 rmsk exon 48168522 48169672 6427 + . gene_id "ERVLB4_7p12.3e"; transcript_id "ERVLB4_7p12.3e"; locus "ERVLB4_7p12.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0798"; repClass "LTR"; repEnd "1169"; repFamily "ERVL"; repLeft "-4545"; repStart "2"; chr7 rmsk exon 48169673 48170161 2104 + . gene_id "ERVLB4_7p12.3e"; transcript_id "ERVLB4_7p12.3e"; locus "ERVLB4_7p12.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0798"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "64"; ### HUERSP1_7p12.3b ### chr7 rmsk gene 48667958 48669247 . - . gene_id "HUERSP1_7p12.3b"; transcript_id "HUERSP1_7p12.3b"; locus "HUERSP1_7p12.3b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0090"; model_cov "1293"; model_pct "20.6"; chr7 rmsk exon 48667958 48669247 3049 - . gene_id "HUERSP1_7p12.3b"; transcript_id "HUERSP1_7p12.3b"; locus "HUERSP1_7p12.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0090"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "4969"; repStart "-1"; ### ERVLB4_7p12.3f ### chr7 rmsk gene 48720573 48721555 . + . gene_id "ERVLB4_7p12.3f"; transcript_id "ERVLB4_7p12.3f"; locus "ERVLB4_7p12.3f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0799"; model_cov "992"; model_pct "17.4"; chr7 rmsk exon 48720573 48720716 850 + . gene_id "ERVLB4_7p12.3f"; transcript_id "ERVLB4_7p12.3f"; locus "ERVLB4_7p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0799"; repClass "LTR"; repEnd "2351"; repFamily "ERVL"; repLeft "-3363"; repStart "2202"; chr7 rmsk exon 48720745 48721019 847 + . gene_id "ERVLB4_7p12.3f"; transcript_id "ERVLB4_7p12.3f"; locus "ERVLB4_7p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0799"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "-2969"; repStart "2444"; chr7 rmsk exon 48721021 48721555 2094 + . gene_id "ERVLB4_7p12.3f"; transcript_id "ERVLB4_7p12.3f"; locus "ERVLB4_7p12.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0799"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "-334"; repStart "4838"; ### MER61_7p12.3b ### chr7 rmsk gene 48889748 48895304 . + . gene_id "MER61_7p12.3b"; transcript_id "MER61_7p12.3b"; locus "MER61_7p12.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0209"; model_cov "4874"; model_pct "93.4"; chr7 rmsk exon 48889748 48890147 2495 + . gene_id "MER61_7p12.3b"; transcript_id "MER61_7p12.3b"; locus "MER61_7p12.3b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0209"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 48890157 48891735 4100 + . gene_id "MER61_7p12.3b"; transcript_id "MER61_7p12.3b"; locus "MER61_7p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0209"; repClass "LTR"; repEnd "1640"; repFamily "ERV1"; repLeft "-3577"; repStart "11"; chr7 rmsk exon 48891716 48894871 20474 + . gene_id "MER61_7p12.3b"; transcript_id "MER61_7p12.3b"; locus "MER61_7p12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0209"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1972"; chr7 rmsk exon 48894872 48895304 2261 + . gene_id "MER61_7p12.3b"; transcript_id "MER61_7p12.3b"; locus "MER61_7p12.3b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0209"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7p12.2a ### chr7 rmsk gene 49030348 49031441 . - . gene_id "ERVLE_7p12.2a"; transcript_id "ERVLE_7p12.2a"; locus "ERVLE_7p12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1816"; model_cov "918"; model_pct "16.2"; chr7 rmsk exon 49030348 49031123 1320 - . gene_id "ERVLE_7p12.2a"; transcript_id "ERVLE_7p12.2a"; locus "ERVLE_7p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1816"; repClass "LTR"; repEnd "3061"; repFamily "ERVL"; repLeft "2254"; repStart "-2606"; chr7 rmsk exon 49031316 49031441 1320 - . gene_id "ERVLE_7p12.2a"; transcript_id "ERVLE_7p12.2a"; locus "ERVLE_7p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1816"; repClass "LTR"; repEnd "2253"; repFamily "ERVL"; repLeft "2142"; repStart "-3414"; ### ERV316A3_7p12.2a ### chr7 rmsk gene 49099790 49100303 . - . gene_id "ERV316A3_7p12.2a"; transcript_id "ERV316A3_7p12.2a"; locus "ERV316A3_7p12.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1378"; model_cov "521"; model_pct "10.0"; chr7 rmsk exon 49099790 49100303 774 - . gene_id "ERV316A3_7p12.2a"; transcript_id "ERV316A3_7p12.2a"; locus "ERV316A3_7p12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1378"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "2811"; repStart "-1894"; ### MER61_7p12.2a ### chr7 rmsk gene 49376330 49382634 . + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0210"; model_cov "5823"; model_pct "100.0"; chr7 rmsk exon 49376330 49376625 1268 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0210"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; chr7 rmsk exon 49376637 49376722 309 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0210"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-5125"; repStart "3"; chr7 rmsk exon 49376956 49377571 2645 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0210"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "244"; chr7 rmsk exon 49377572 49379628 12173 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0210"; repClass "LTR"; repEnd "3102"; repFamily "ERV1"; repLeft "-2115"; repStart "958"; chr7 rmsk exon 49380310 49381961 12173 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0210"; repClass "LTR"; repEnd "4818"; repFamily "ERV1"; repLeft "-399"; repStart "2170"; chr7 rmsk exon 49381987 49382334 2353 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0210"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4871"; chr7 rmsk exon 49382335 49382634 1429 + . gene_id "MER61_7p12.2a"; transcript_id "MER61_7p12.2a"; locus "MER61_7p12.2a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0210"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; ### ERVLE_7p12.2b ### chr7 rmsk gene 49722463 49723515 . - . gene_id "ERVLE_7p12.2b"; transcript_id "ERVLE_7p12.2b"; locus "ERVLE_7p12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1818"; model_cov "990"; model_pct "17.5"; chr7 rmsk exon 49722463 49722959 1095 - . gene_id "ERVLE_7p12.2b"; transcript_id "ERVLE_7p12.2b"; locus "ERVLE_7p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1818"; repClass "LTR"; repEnd "5288"; repFamily "ERVL"; repLeft "4657"; repStart "-379"; chr7 rmsk exon 49723168 49723515 869 - . gene_id "ERVLE_7p12.2b"; transcript_id "ERVLE_7p12.2b"; locus "ERVLE_7p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1818"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "2942"; repStart "-2366"; ### ERV316A3_7p12.2b ### chr7 rmsk gene 49925111 49925797 . - . gene_id "ERV316A3_7p12.2b"; transcript_id "ERV316A3_7p12.2b"; locus "ERV316A3_7p12.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1379"; model_cov "701"; model_pct "13.4"; chr7 rmsk exon 49925111 49925797 1838 - . gene_id "ERV316A3_7p12.2b"; transcript_id "ERV316A3_7p12.2b"; locus "ERV316A3_7p12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1379"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "3617"; repStart "-908"; ### ERVLE_7p12.2c ### chr7 rmsk gene 49927075 49929264 . - . gene_id "ERVLE_7p12.2c"; transcript_id "ERVLE_7p12.2c"; locus "ERVLE_7p12.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1819"; model_cov "2310"; model_pct "40.8"; chr7 rmsk exon 49927075 49929264 6563 - . gene_id "ERVLE_7p12.2c"; transcript_id "ERVLE_7p12.2c"; locus "ERVLE_7p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1819"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "2806"; repStart "-551"; ### MER61_7p12.2b ### chr7 rmsk gene 49985692 49990574 . + . gene_id "MER61_7p12.2b"; transcript_id "MER61_7p12.2b"; locus "MER61_7p12.2b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0211"; model_cov "3265"; model_pct "62.6"; chr7 rmsk exon 49985692 49986109 2611 + . gene_id "MER61_7p12.2b"; transcript_id "MER61_7p12.2b"; locus "MER61_7p12.2b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0211"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 49986110 49986259 729 + . gene_id "MER61_7p12.2b"; transcript_id "MER61_7p12.2b"; locus "MER61_7p12.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0211"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "-5068"; repStart "2"; chr7 rmsk exon 49986362 49987723 3365 + . gene_id "MER61_7p12.2b"; transcript_id "MER61_7p12.2b"; locus "MER61_7p12.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0211"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "-2958"; repStart "1781"; chr7 rmsk exon 49987773 49990574 17181 + . gene_id "MER61_7p12.2b"; transcript_id "MER61_7p12.2b"; locus "MER61_7p12.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0211"; repClass "LTR"; repEnd "4623"; repFamily "ERV1"; repLeft "-594"; repStart "1983"; ### ERVLB4_7p12.2 ### chr7 rmsk gene 49993606 49999898 . - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0800"; model_cov "4329"; model_pct "75.8"; chr7 rmsk exon 49993606 49995656 22995 - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0800"; repClass "LTR"; repEnd "4345"; repFamily "ERVL"; repLeft "2254"; repStart "-1369"; chr7 rmsk exon 49996152 49997902 22995 - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0800"; repClass "LTR"; repEnd "2253"; repFamily "ERVL"; repLeft "554"; repStart "-3461"; chr7 rmsk exon 49998216 49998715 22995 - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0800"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "54"; repStart "-5161"; chr7 rmsk exon 49998792 49998832 307 - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0800"; repClass "LTR"; repEnd "43"; repFamily "ERVL"; repLeft "3"; repStart "-5671"; chr7 rmsk exon 49999423 49999898 2547 - . gene_id "ERVLB4_7p12.2"; transcript_id "ERVLB4_7p12.2"; locus "ERVLB4_7p12.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0800"; repClass "LTR"; repEnd "490"; repFamily "ERVL"; repLeft "-23"; repStart "-30"; ### MER4B_7p12.2 ### chr7 rmsk gene 50487055 50490112 . + . gene_id "MER4B_7p12.2"; transcript_id "MER4B_7p12.2"; locus "MER4B_7p12.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0207"; model_cov "4130"; model_pct "61.1"; chr7 rmsk exon 50487055 50487463 1981 + . gene_id "MER4B_7p12.2"; transcript_id "MER4B_7p12.2"; locus "MER4B_7p12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0207"; repClass "LTR"; repEnd "3024"; repFamily "ERV1"; repLeft "-3734"; repStart "2604"; chr7 rmsk exon 50487465 50488995 4213 + . gene_id "MER4B_7p12.2"; transcript_id "MER4B_7p12.2"; locus "MER4B_7p12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0207"; repClass "LTR"; repEnd "3823"; repFamily "ERV1"; repLeft "-2935"; repStart "946"; chr7 rmsk exon 50489307 50489411 3971 + . gene_id "MER4B_7p12.2"; transcript_id "MER4B_7p12.2"; locus "MER4B_7p12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0207"; repClass "LTR"; repEnd "3939"; repFamily "ERV1"; repLeft "-2819"; repStart "3824"; chr7 rmsk exon 50489408 50490112 3702 + . gene_id "MER4B_7p12.2"; transcript_id "MER4B_7p12.2"; locus "MER4B_7p12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0207"; repClass "LTR"; repEnd "4820"; repFamily "ERV1"; repLeft "-1938"; repStart "4102"; ### MER4_7p12.2 ### chr7 rmsk gene 50490099 50491999 . + . gene_id "MER4_7p12.2"; transcript_id "MER4_7p12.2"; locus "MER4_7p12.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0377"; model_cov "1544"; model_pct "23.4"; chr7 rmsk exon 50490099 50490389 3547 + . gene_id "MER4_7p12.2"; transcript_id "MER4_7p12.2"; locus "MER4_7p12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0377"; repClass "LTR"; repEnd "5647"; repFamily "ERV1"; repLeft "-951"; repStart "5320"; chr7 rmsk exon 50490714 50491531 3776 + . gene_id "MER4_7p12.2"; transcript_id "MER4_7p12.2"; locus "MER4_7p12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0377"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5381"; chr7 rmsk exon 50491537 50491999 3014 + . gene_id "MER4_7p12.2"; transcript_id "MER4_7p12.2"; locus "MER4_7p12.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0377"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK11_7p12.1 ### chr7 rmsk gene 50576977 50583954 . + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0048"; model_cov "5503"; model_pct "69.2"; chr7 rmsk exon 50576977 50577081 679 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "1135"; chr7 rmsk exon 50577082 50577976 6555 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "892"; repFamily "ERVK"; repLeft "-7061"; repStart "1"; chr7 rmsk exon 50577976 50578226 2097 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "1466"; repFamily "ERVK"; repLeft "-6487"; repStart "1216"; chr7 rmsk exon 50578227 50578826 14015 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "3028"; repFamily "ERVK"; repLeft "-4925"; repStart "2429"; chr7 rmsk exon 50579287 50579806 14015 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "3573"; repFamily "ERVK"; repLeft "-4380"; repStart "3029"; chr7 rmsk exon 50579881 50580759 14015 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "4497"; repFamily "ERVK"; repLeft "-3456"; repStart "3574"; chr7 rmsk exon 50580785 50581989 9374 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "5467"; chr7 rmsk exon 50581973 50582965 8232 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr7 rmsk exon 50582966 50583954 4637 + . gene_id "HERVK11_7p12.1"; transcript_id "HERVK11_7p12.1"; locus "HERVK11_7p12.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0048"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### ERV316A3_7p12.1a ### chr7 rmsk gene 50858525 50860175 . + . gene_id "ERV316A3_7p12.1a"; transcript_id "ERV316A3_7p12.1a"; locus "ERV316A3_7p12.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1380"; model_cov "782"; model_pct "15.0"; chr7 rmsk exon 50858525 50859247 878 + . gene_id "ERV316A3_7p12.1a"; transcript_id "ERV316A3_7p12.1a"; locus "ERV316A3_7p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1380"; repClass "LTR"; repEnd "4272"; repFamily "ERVL"; repLeft "-954"; repStart "3611"; chr7 rmsk exon 50860046 50860175 878 + . gene_id "ERV316A3_7p12.1a"; transcript_id "ERV316A3_7p12.1a"; locus "ERV316A3_7p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1380"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "-828"; repStart "4277"; ### ERVL_7p12.1a ### chr7 rmsk gene 51060297 51062031 . + . gene_id "ERVL_7p12.1a"; transcript_id "ERVL_7p12.1a"; locus "ERVL_7p12.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0209"; model_cov "1312"; model_pct "22.8"; chr7 rmsk exon 51060297 51061554 7086 + . gene_id "ERVL_7p12.1a"; transcript_id "ERVL_7p12.1a"; locus "ERVL_7p12.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0209"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4445"; chr7 rmsk exon 51061560 51061950 1381 + . gene_id "ERVL_7p12.1a"; transcript_id "ERVL_7p12.1a"; locus "ERVL_7p12.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0209"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-51"; repStart "-19"; chr7 rmsk exon 51061983 51062031 802 + . gene_id "ERVL_7p12.1a"; transcript_id "ERVL_7p12.1a"; locus "ERVL_7p12.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0209"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "470"; ### ERVLB4_7p12.1a ### chr7 rmsk gene 51333061 51336472 . - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0801"; model_cov "2088"; model_pct "36.5"; chr7 rmsk exon 51333061 51333321 1122 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "158"; repStart "-2"; chr7 rmsk exon 51333625 51333687 917 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "204"; repFamily "ERVL"; repLeft "143"; repStart "-316"; chr7 rmsk exon 51333692 51334224 3025 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "4278"; repFamily "ERVL"; repLeft "3712"; repStart "-1436"; chr7 rmsk exon 51334329 51334553 1095 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "3174"; repFamily "ERVL"; repLeft "2950"; repStart "-2540"; chr7 rmsk exon 51334718 51334784 390 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "2269"; repFamily "ERVL"; repLeft "2201"; repStart "-3445"; chr7 rmsk exon 51334794 51335432 3071 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "2946"; repFamily "ERVL"; repLeft "2258"; repStart "-2768"; chr7 rmsk exon 51335946 51336472 2855 - . gene_id "ERVLB4_7p12.1a"; transcript_id "ERVLB4_7p12.1a"; locus "ERVLB4_7p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0801"; repClass "LTR"; repEnd "2269"; repFamily "ERVL"; repLeft "1727"; repStart "-3445"; ### MER61_7p12.1 ### chr7 rmsk gene 51445953 51448241 . + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0213"; model_cov "1829"; model_pct "35.1"; chr7 rmsk exon 51445953 51446272 1608 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0213"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr7 rmsk exon 51446275 51446508 1074 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0213"; repClass "LTR"; repEnd "243"; repFamily "ERV1"; repLeft "-4974"; repStart "2"; chr7 rmsk exon 51446558 51447009 1546 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0213"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "-4434"; repStart "213"; chr7 rmsk exon 51446999 51447354 2095 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0213"; repClass "LTR"; repEnd "1730"; repFamily "ERV1"; repLeft "-3487"; repStart "1320"; chr7 rmsk exon 51447353 51447912 2532 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0213"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "-5"; repStart "4604"; chr7 rmsk exon 51447918 51448241 1912 + . gene_id "MER61_7p12.1"; transcript_id "MER61_7p12.1"; locus "MER61_7p12.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0213"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7p12.1a ### chr7 rmsk gene 51464441 51465329 . - . gene_id "ERVLE_7p12.1a"; transcript_id "ERVLE_7p12.1a"; locus "ERVLE_7p12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1820"; model_cov "877"; model_pct "15.5"; chr7 rmsk exon 51464441 51465039 978 - . gene_id "ERVLE_7p12.1a"; transcript_id "ERVLE_7p12.1a"; locus "ERVLE_7p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1820"; repClass "LTR"; repEnd "5270"; repFamily "ERVL"; repLeft "4646"; repStart "-397"; chr7 rmsk exon 51465083 51465329 593 - . gene_id "ERVLE_7p12.1a"; transcript_id "ERVLE_7p12.1a"; locus "ERVLE_7p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1820"; repClass "LTR"; repEnd "1962"; repFamily "ERVL"; repLeft "1709"; repStart "-3705"; ### ERVLE_7p12.1b ### chr7 rmsk gene 51819583 51820870 . - . gene_id "ERVLE_7p12.1b"; transcript_id "ERVLE_7p12.1b"; locus "ERVLE_7p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1822"; model_cov "924"; model_pct "16.3"; chr7 rmsk exon 51819583 51819675 279 - . gene_id "ERVLE_7p12.1b"; transcript_id "ERVLE_7p12.1b"; locus "ERVLE_7p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1822"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "4730"; repStart "-843"; chr7 rmsk exon 51819709 51820190 812 - . gene_id "ERVLE_7p12.1b"; transcript_id "ERVLE_7p12.1b"; locus "ERVLE_7p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1822"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "4100"; repStart "-1058"; chr7 rmsk exon 51820564 51820870 324 - . gene_id "ERVLE_7p12.1b"; transcript_id "ERVLE_7p12.1b"; locus "ERVLE_7p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1822"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "3391"; repStart "-1955"; ### HERVH_7p12.1a ### chr7 rmsk gene 51869850 51872089 . + . gene_id "HERVH_7p12.1a"; transcript_id "HERVH_7p12.1a"; locus "HERVH_7p12.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0639"; model_cov "1666"; model_pct "21.6"; chr7 rmsk exon 51869850 51870330 3084 + . gene_id "HERVH_7p12.1a"; transcript_id "HERVH_7p12.1a"; locus "HERVH_7p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0639"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 51870333 51872089 10054 + . gene_id "HERVH_7p12.1a"; transcript_id "HERVH_7p12.1a"; locus "HERVH_7p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0639"; repClass "LTR"; repEnd "1667"; repFamily "ERV1"; repLeft "-6046"; repStart "1"; ### ERVL_7p12.1b ### chr7 rmsk gene 52143786 52145642 . + . gene_id "ERVL_7p12.1b"; transcript_id "ERVL_7p12.1b"; locus "ERVL_7p12.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0210"; model_cov "1020"; model_pct "17.7"; chr7 rmsk exon 52143786 52144812 5428 + . gene_id "ERVL_7p12.1b"; transcript_id "ERVL_7p12.1b"; locus "ERVL_7p12.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0210"; repClass "LTR"; repEnd "3009"; repFamily "ERVL"; repLeft "-2748"; repStart "1989"; chr7 rmsk exon 52145266 52145642 1195 + . gene_id "ERVL_7p12.1b"; transcript_id "ERVL_7p12.1b"; locus "ERVL_7p12.1b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0210"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-3"; repStart "58"; ### ERVLE_7p12.1c ### chr7 rmsk gene 52242403 52243788 . - . gene_id "ERVLE_7p12.1c"; transcript_id "ERVLE_7p12.1c"; locus "ERVLE_7p12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1823"; model_cov "1116"; model_pct "19.7"; chr7 rmsk exon 52242403 52243018 495 - . gene_id "ERVLE_7p12.1c"; transcript_id "ERVLE_7p12.1c"; locus "ERVLE_7p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1823"; repClass "LTR"; repEnd "3593"; repFamily "ERVL"; repLeft "2955"; repStart "-2074"; chr7 rmsk exon 52243111 52243403 508 - . gene_id "ERVLE_7p12.1c"; transcript_id "ERVLE_7p12.1c"; locus "ERVLE_7p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1823"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2508"; repStart "-2855"; chr7 rmsk exon 52243622 52243788 483 - . gene_id "ERVLE_7p12.1c"; transcript_id "ERVLE_7p12.1c"; locus "ERVLE_7p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1823"; repClass "LTR"; repEnd "2271"; repFamily "ERVL"; repLeft "2097"; repStart "-3396"; ### HERV9_7p12.1 ### chr7 rmsk gene 52294853 52297269 . + . gene_id "HERV9_7p12.1"; transcript_id "HERV9_7p12.1"; locus "HERV9_7p12.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0080"; model_cov "1981"; model_pct "23.5"; chr7 rmsk exon 52294853 52295367 2970 + . gene_id "HERV9_7p12.1"; transcript_id "HERV9_7p12.1"; locus "HERV9_7p12.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0080"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-259"; repStart "1"; chr7 rmsk exon 52295368 52297269 8367 + . gene_id "HERV9_7p12.1"; transcript_id "HERV9_7p12.1"; locus "HERV9_7p12.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0080"; repClass "LTR"; repEnd "5044"; repFamily "ERV1"; repLeft "-3392"; repStart "3063"; ### ERVLB4_7p12.1b ### chr7 rmsk gene 52300734 52304110 . + . gene_id "ERVLB4_7p12.1b"; transcript_id "ERVLB4_7p12.1b"; locus "ERVLB4_7p12.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0804"; model_cov "1036"; model_pct "18.1"; chr7 rmsk exon 52300734 52301268 2290 + . gene_id "ERVLB4_7p12.1b"; transcript_id "ERVLB4_7p12.1b"; locus "ERVLB4_7p12.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0804"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 52301269 52301699 1860 + . gene_id "ERVLB4_7p12.1b"; transcript_id "ERVLB4_7p12.1b"; locus "ERVLB4_7p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0804"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "-5287"; repStart "1"; chr7 rmsk exon 52303481 52303641 494 + . gene_id "ERVLB4_7p12.1b"; transcript_id "ERVLB4_7p12.1b"; locus "ERVLB4_7p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0804"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-5144"; repStart "424"; chr7 rmsk exon 52303639 52304110 2397 + . gene_id "ERVLB4_7p12.1b"; transcript_id "ERVLB4_7p12.1b"; locus "ERVLB4_7p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0804"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "-3228"; repStart "2022"; ### ERVLB4_7p12.1c ### chr7 rmsk gene 52311084 52313173 . - . gene_id "ERVLB4_7p12.1c"; transcript_id "ERVLB4_7p12.1c"; locus "ERVLB4_7p12.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0805"; model_cov "1622"; model_pct "28.4"; chr7 rmsk exon 52311084 52311596 1566 - . gene_id "ERVLB4_7p12.1c"; transcript_id "ERVLB4_7p12.1c"; locus "ERVLB4_7p12.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0805"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr7 rmsk exon 52311597 52313173 7364 - . gene_id "ERVLB4_7p12.1c"; transcript_id "ERVLB4_7p12.1c"; locus "ERVLB4_7p12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0805"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4092"; repStart "0"; ### HERVH_7p12.1b ### chr7 rmsk gene 52332923 52339041 . - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0640"; model_cov "5821"; model_pct "75.5"; chr7 rmsk exon 52332923 52333029 456 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "128"; repFamily "ERV1"; repLeft "1"; repStart "-322"; chr7 rmsk exon 52333030 52333570 3259 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr7 rmsk exon 52333625 52333861 1547 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6708"; repStart "-765"; chr7 rmsk exon 52333849 52335375 7927 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "5261"; repFamily "ERV1"; repLeft "3806"; repStart "-2452"; chr7 rmsk exon 52335370 52338671 17102 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "1"; repStart "-4126"; chr7 rmsk exon 52338672 52339041 1874 - . gene_id "HERVH_7p12.1b"; transcript_id "HERVH_7p12.1b"; locus "HERVH_7p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0640"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_7p12.1 ### chr7 rmsk gene 52387645 52391645 . + . gene_id "HERVL_7p12.1"; transcript_id "HERVL_7p12.1"; locus "HERVL_7p12.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0685"; model_cov "3158"; model_pct "55.9"; chr7 rmsk exon 52387645 52390736 23723 + . gene_id "HERVL_7p12.1"; transcript_id "HERVL_7p12.1"; locus "HERVL_7p12.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0685"; repClass "LTR"; repEnd "5586"; repFamily "ERVL"; repLeft "-68"; repStart "2495"; chr7 rmsk exon 52391022 52391096 23723 + . gene_id "HERVL_7p12.1"; transcript_id "HERVL_7p12.1"; locus "HERVL_7p12.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0685"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5587"; chr7 rmsk exon 52391097 52391645 1927 + . gene_id "HERVL_7p12.1"; transcript_id "HERVL_7p12.1"; locus "HERVL_7p12.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0685"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-109"; ### ERV316A3_7p12.1b ### chr7 rmsk gene 52466780 52468074 . + . gene_id "ERV316A3_7p12.1b"; transcript_id "ERV316A3_7p12.1b"; locus "ERV316A3_7p12.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1384"; model_cov "614"; model_pct "11.7"; chr7 rmsk exon 52466780 52467318 1014 + . gene_id "ERV316A3_7p12.1b"; transcript_id "ERV316A3_7p12.1b"; locus "ERV316A3_7p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1384"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-674"; repStart "3938"; chr7 rmsk exon 52467633 52468074 1437 + . gene_id "ERV316A3_7p12.1b"; transcript_id "ERV316A3_7p12.1b"; locus "ERV316A3_7p12.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1384"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERVLB4_7p12.1d ### chr7 rmsk gene 52873266 52876152 . - . gene_id "ERVLB4_7p12.1d"; transcript_id "ERVLB4_7p12.1d"; locus "ERVLB4_7p12.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0806"; model_cov "2208"; model_pct "38.6"; chr7 rmsk exon 52873266 52874362 10805 - . gene_id "ERVLB4_7p12.1d"; transcript_id "ERVLB4_7p12.1d"; locus "ERVLB4_7p12.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0806"; repClass "LTR"; repEnd "2532"; repFamily "ERVL"; repLeft "1414"; repStart "-3182"; chr7 rmsk exon 52874659 52874764 10805 - . gene_id "ERVLB4_7p12.1d"; transcript_id "ERVLB4_7p12.1d"; locus "ERVLB4_7p12.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0806"; repClass "LTR"; repEnd "1413"; repFamily "ERVL"; repLeft "1347"; repStart "-4301"; chr7 rmsk exon 52875076 52876152 10805 - . gene_id "ERVLB4_7p12.1d"; transcript_id "ERVLB4_7p12.1d"; locus "ERVLB4_7p12.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0806"; repClass "LTR"; repEnd "1346"; repFamily "ERVL"; repLeft "322"; repStart "-4368"; ### HERVL40_7p12.1 ### chr7 rmsk gene 53098838 53099966 . - . gene_id "HERVL40_7p12.1"; transcript_id "HERVL40_7p12.1"; locus "HERVL40_7p12.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0204"; model_cov "555"; model_pct "10.0"; chr7 rmsk exon 53098838 53098948 602 - . gene_id "HERVL40_7p12.1"; transcript_id "HERVL40_7p12.1"; locus "HERVL40_7p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0204"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "455"; repStart "-4960"; chr7 rmsk exon 53099340 53099403 602 - . gene_id "HERVL40_7p12.1"; transcript_id "HERVL40_7p12.1"; locus "HERVL40_7p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0204"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "400"; repStart "-5076"; chr7 rmsk exon 53099443 53099832 1321 - . gene_id "HERVL40_7p12.1"; transcript_id "HERVL40_7p12.1"; locus "HERVL40_7p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0204"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "10"; repStart "-5134"; chr7 rmsk exon 53099837 53099966 494 - . gene_id "HERVL40_7p12.1"; transcript_id "HERVL40_7p12.1"; locus "HERVL40_7p12.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0204"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "386"; repStart "0"; ### ERVLB4_7p12.1e ### chr7 rmsk gene 53184635 53185645 . - . gene_id "ERVLB4_7p12.1e"; transcript_id "ERVLB4_7p12.1e"; locus "ERVLB4_7p12.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0807"; model_cov "1084"; model_pct "19.0"; chr7 rmsk exon 53184635 53185645 4380 - . gene_id "ERVLB4_7p12.1e"; transcript_id "ERVLB4_7p12.1e"; locus "ERVLB4_7p12.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0807"; repClass "LTR"; repEnd "1357"; repFamily "ERVL"; repLeft "273"; repStart "-4357"; ### ERVLB4_7p12.1f ### chr7 rmsk gene 53188928 53189794 . + . gene_id "ERVLB4_7p12.1f"; transcript_id "ERVLB4_7p12.1f"; locus "ERVLB4_7p12.1f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0808"; model_cov "929"; model_pct "16.3"; chr7 rmsk exon 53188928 53189794 3829 + . gene_id "ERVLB4_7p12.1f"; transcript_id "ERVLB4_7p12.1f"; locus "ERVLB4_7p12.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0808"; repClass "LTR"; repEnd "2283"; repFamily "ERVL"; repLeft "-3431"; repStart "1354"; ### HARLEQUIN_7p12.1 ### chr7 rmsk gene 53234504 53235931 . + . gene_id "HARLEQUIN_7p12.1"; transcript_id "HARLEQUIN_7p12.1"; locus "HARLEQUIN_7p12.1"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0097"; model_cov "1445"; model_pct "21.0"; chr7 rmsk exon 53234504 53235931 11352 + . gene_id "HARLEQUIN_7p12.1"; transcript_id "HARLEQUIN_7p12.1"; locus "HARLEQUIN_7p12.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0097"; repClass "LTR"; repEnd "4200"; repFamily "ERV1"; repLeft "-2696"; repStart "2755"; ### MER4_7p12.1 ### chr7 rmsk gene 53336881 53343720 . + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0378"; model_cov "5917"; model_pct "89.7"; chr7 rmsk exon 53336881 53337326 2945 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0378"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 53337330 53337591 10115 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0378"; repClass "LTR"; repEnd "354"; repFamily "ERV1"; repLeft "-6244"; repStart "1"; chr7 rmsk exon 53337644 53339654 10115 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0378"; repClass "LTR"; repEnd "2479"; repFamily "ERV1"; repLeft "-4119"; repStart "355"; chr7 rmsk exon 53339933 53340612 3028 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0378"; repClass "LTR"; repEnd "3463"; repFamily "ERV1"; repLeft "-3135"; repStart "2737"; chr7 rmsk exon 53340604 53343263 15147 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0378"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3882"; chr7 rmsk exon 53343271 53343720 3323 + . gene_id "MER4_7p12.1"; transcript_id "MER4_7p12.1"; locus "MER4_7p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0378"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_7p12.1c ### chr7 rmsk gene 53364457 53365157 . - . gene_id "ERV316A3_7p12.1c"; transcript_id "ERV316A3_7p12.1c"; locus "ERV316A3_7p12.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1385"; model_cov "714"; model_pct "13.7"; chr7 rmsk exon 53364457 53364871 1023 - . gene_id "ERV316A3_7p12.1c"; transcript_id "ERV316A3_7p12.1c"; locus "ERV316A3_7p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1385"; repClass "LTR"; repEnd "1454"; repFamily "ERVL"; repLeft "1029"; repStart "-3772"; chr7 rmsk exon 53364872 53365157 458 - . gene_id "ERV316A3_7p12.1c"; transcript_id "ERV316A3_7p12.1c"; locus "ERV316A3_7p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1385"; repClass "LTR"; repEnd "836"; repFamily "ERVL"; repLeft "547"; repStart "-4390"; ### ERVLE_7p12.1d ### chr7 rmsk gene 53421066 53421945 . + . gene_id "ERVLE_7p12.1d"; transcript_id "ERVLE_7p12.1d"; locus "ERVLE_7p12.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1825"; model_cov "752"; model_pct "13.3"; chr7 rmsk exon 53421066 53421344 314 + . gene_id "ERVLE_7p12.1d"; transcript_id "ERVLE_7p12.1d"; locus "ERVLE_7p12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1825"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "-1231"; repStart "4146"; chr7 rmsk exon 53421499 53421945 808 + . gene_id "ERVLE_7p12.1d"; transcript_id "ERVLE_7p12.1d"; locus "ERVLE_7p12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1825"; repClass "LTR"; repEnd "4812"; repFamily "ERVL"; repLeft "-855"; repStart "4350"; ### ERV316A3_7p12.1d ### chr7 rmsk gene 53521005 53521557 . + . gene_id "ERV316A3_7p12.1d"; transcript_id "ERV316A3_7p12.1d"; locus "ERV316A3_7p12.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1386"; model_cov "542"; model_pct "10.4"; chr7 rmsk exon 53521005 53521557 901 + . gene_id "ERV316A3_7p12.1d"; transcript_id "ERV316A3_7p12.1d"; locus "ERV316A3_7p12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1386"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "-3645"; repStart "1039"; ### ERV316A3_7p12.1e ### chr7 rmsk gene 53637963 53638954 . + . gene_id "ERV316A3_7p12.1e"; transcript_id "ERV316A3_7p12.1e"; locus "ERV316A3_7p12.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1387"; model_cov "613"; model_pct "11.7"; chr7 rmsk exon 53637963 53637980 1063 + . gene_id "ERV316A3_7p12.1e"; transcript_id "ERV316A3_7p12.1e"; locus "ERV316A3_7p12.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1387"; repClass "LTR"; repEnd "2211"; repFamily "ERVL"; repLeft "-3015"; repStart "2194"; chr7 rmsk exon 53638412 53638954 1273 + . gene_id "ERV316A3_7p12.1e"; transcript_id "ERV316A3_7p12.1e"; locus "ERV316A3_7p12.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1387"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "-2462"; repStart "2168"; ### HERVL_7p11.2a ### chr7 rmsk gene 53905106 53909288 . + . gene_id "HERVL_7p11.2a"; transcript_id "HERVL_7p11.2a"; locus "HERVL_7p11.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0686"; model_cov "3625"; model_pct "64.1"; chr7 rmsk exon 53905106 53908707 26052 + . gene_id "HERVL_7p11.2a"; transcript_id "HERVL_7p11.2a"; locus "HERVL_7p11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0686"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr7 rmsk exon 53908708 53909288 1606 + . gene_id "HERVL_7p11.2a"; transcript_id "HERVL_7p11.2a"; locus "HERVL_7p11.2a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0686"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV9_7p11.2 ### chr7 rmsk gene 53954700 53962987 . - . gene_id "HERV9_7p11.2"; transcript_id "HERV9_7p11.2"; locus "HERV9_7p11.2"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0081"; model_cov "6919"; model_pct "82.0"; chr7 rmsk exon 53954700 53955365 4033 - . gene_id "HERV9_7p11.2"; transcript_id "HERV9_7p11.2"; locus "HERV9_7p11.2"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0081"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "370"; repStart "-123"; chr7 rmsk exon 53955366 53956346 8272 - . gene_id "HERV9_7p11.2"; transcript_id "HERV9_7p11.2"; locus "HERV9_7p11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0081"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7457"; repStart "0"; chr7 rmsk exon 53956344 53962338 48330 - . gene_id "HERV9_7p11.2"; transcript_id "HERV9_7p11.2"; locus "HERV9_7p11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0081"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "1"; repStart "-2495"; chr7 rmsk exon 53962339 53962987 4758 - . gene_id "HERV9_7p11.2"; transcript_id "HERV9_7p11.2"; locus "HERV9_7p11.2"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0081"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_7p11.2b ### chr7 rmsk gene 54121735 54128405 . - . gene_id "HERVL_7p11.2b"; transcript_id "HERVL_7p11.2b"; locus "HERVL_7p11.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0687"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 54121735 54121803 330 - . gene_id "HERVL_7p11.2b"; transcript_id "HERVL_7p11.2b"; locus "HERVL_7p11.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0687"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "380"; repStart "0"; chr7 rmsk exon 54121940 54122322 2556 - . gene_id "HERVL_7p11.2b"; transcript_id "HERVL_7p11.2b"; locus "HERVL_7p11.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0687"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "1"; repStart "-72"; chr7 rmsk exon 54122323 54127943 43389 - . gene_id "HERVL_7p11.2b"; transcript_id "HERVL_7p11.2b"; locus "HERVL_7p11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0687"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 54127944 54128405 3094 - . gene_id "HERVL_7p11.2b"; transcript_id "HERVL_7p11.2b"; locus "HERVL_7p11.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0687"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4B_7p11.2 ### chr7 rmsk gene 54160295 54167167 . - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0209"; model_cov "5442"; model_pct "80.5"; chr7 rmsk exon 54160295 54160906 3685 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 54160907 54161407 3895 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6213"; repStart "0"; chr7 rmsk exon 54162053 54162230 3895 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "6212"; repFamily "ERV1"; repLeft "6042"; repStart "-546"; chr7 rmsk exon 54162212 54163102 5573 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "5913"; repFamily "ERV1"; repLeft "5016"; repStart "-845"; chr7 rmsk exon 54163107 54163265 859 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "4481"; repFamily "ERV1"; repLeft "4321"; repStart "-2277"; chr7 rmsk exon 54163270 54164037 4726 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "3421"; repStart "-2572"; chr7 rmsk exon 54164024 54164230 8405 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "2891"; repStart "-3663"; chr7 rmsk exon 54164564 54167167 8405 - . gene_id "MER4B_7p11.2"; transcript_id "MER4B_7p11.2"; locus "MER4B_7p11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0209"; repClass "LTR"; repEnd "2890"; repFamily "ERV1"; repLeft "189"; repStart "-3868"; ### MER4_7p11.2a ### chr7 rmsk gene 54167180 54168669 . - . gene_id "MER4_7p11.2a"; transcript_id "MER4_7p11.2a"; locus "MER4_7p11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0379"; model_cov "1133"; model_pct "17.2"; chr7 rmsk exon 54167180 54167503 458 - . gene_id "MER4_7p11.2a"; transcript_id "MER4_7p11.2a"; locus "MER4_7p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0379"; repClass "LTR"; repEnd "2479"; repFamily "ERV1"; repLeft "2112"; repStart "-4119"; chr7 rmsk exon 54167564 54167668 387 - . gene_id "MER4_7p11.2a"; transcript_id "MER4_7p11.2a"; locus "MER4_7p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0379"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-718"; repStart "-7235"; chr7 rmsk exon 54167660 54168227 2738 - . gene_id "MER4_7p11.2a"; transcript_id "MER4_7p11.2a"; locus "MER4_7p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0379"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr7 rmsk exon 54168231 54168669 3262 - . gene_id "MER4_7p11.2a"; transcript_id "MER4_7p11.2a"; locus "MER4_7p11.2a"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0379"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "172"; repStart "0"; ### PABLA_7p11.2a ### chr7 rmsk gene 54387408 54391464 . - . gene_id "PABLA_7p11.2a"; transcript_id "PABLA_7p11.2a"; locus "PABLA_7p11.2a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0069"; model_cov "3215"; model_pct "64.1"; chr7 rmsk exon 54387408 54388053 4902 - . gene_id "PABLA_7p11.2a"; transcript_id "PABLA_7p11.2a"; locus "PABLA_7p11.2a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0069"; repClass "LTR"; repEnd "658"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 54388054 54390198 29655 - . gene_id "PABLA_7p11.2a"; transcript_id "PABLA_7p11.2a"; locus "PABLA_7p11.2a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0069"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "2849"; repStart "0"; chr7 rmsk exon 54390509 54391464 29655 - . gene_id "PABLA_7p11.2a"; transcript_id "PABLA_7p11.2a"; locus "PABLA_7p11.2a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0069"; repClass "LTR"; repEnd "2848"; repFamily "ERV1"; repLeft "1799"; repStart "-2167"; ### PABLA_7p11.2b ### chr7 rmsk gene 54391675 54393967 . - . gene_id "PABLA_7p11.2b"; transcript_id "PABLA_7p11.2b"; locus "PABLA_7p11.2b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0070"; model_cov "1796"; model_pct "35.8"; chr7 rmsk exon 54391675 54393308 29655 - . gene_id "PABLA_7p11.2b"; transcript_id "PABLA_7p11.2b"; locus "PABLA_7p11.2b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0070"; repClass "LTR"; repEnd "2848"; repFamily "ERV1"; repLeft "1052"; repStart "-2167"; chr7 rmsk exon 54393309 54393967 5008 - . gene_id "PABLA_7p11.2b"; transcript_id "PABLA_7p11.2b"; locus "PABLA_7p11.2b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0070"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_7p11.2a ### chr7 rmsk gene 54448839 54455180 . + . gene_id "HML3_7p11.2a"; transcript_id "HML3_7p11.2a"; locus "HML3_7p11.2a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0123"; model_cov "5343"; model_pct "88.7"; chr7 rmsk exon 54448839 54449351 4257 + . gene_id "HML3_7p11.2a"; transcript_id "HML3_7p11.2a"; locus "HML3_7p11.2a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0123"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "3"; chr7 rmsk exon 54449352 54449948 4291 + . gene_id "HML3_7p11.2a"; transcript_id "HML3_7p11.2a"; locus "HML3_7p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0123"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr7 rmsk exon 54449949 54454667 36621 + . gene_id "HML3_7p11.2a"; transcript_id "HML3_7p11.2a"; locus "HML3_7p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0123"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "-1"; repStart "1280"; chr7 rmsk exon 54454669 54455180 4135 + . gene_id "HML3_7p11.2a"; transcript_id "HML3_7p11.2a"; locus "HML3_7p11.2a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0123"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_7p11.2b ### chr7 rmsk gene 54630789 54632509 . + . gene_id "MER4_7p11.2b"; transcript_id "MER4_7p11.2b"; locus "MER4_7p11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0380"; model_cov "1315"; model_pct "19.9"; chr7 rmsk exon 54630789 54632047 7398 + . gene_id "MER4_7p11.2b"; transcript_id "MER4_7p11.2b"; locus "MER4_7p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0380"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5283"; chr7 rmsk exon 54632049 54632509 3294 + . gene_id "MER4_7p11.2b"; transcript_id "MER4_7p11.2b"; locus "MER4_7p11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0380"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_7p11.2c ### chr7 rmsk gene 54706580 54709328 . - . gene_id "MER4_7p11.2c"; transcript_id "MER4_7p11.2c"; locus "MER4_7p11.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0381"; model_cov "2051"; model_pct "31.1"; chr7 rmsk exon 54706580 54707051 3352 - . gene_id "MER4_7p11.2c"; transcript_id "MER4_7p11.2c"; locus "MER4_7p11.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0381"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr7 rmsk exon 54707060 54707796 12696 - . gene_id "MER4_7p11.2c"; transcript_id "MER4_7p11.2c"; locus "MER4_7p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0381"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "5827"; repStart "-1"; chr7 rmsk exon 54708057 54709328 12696 - . gene_id "MER4_7p11.2c"; transcript_id "MER4_7p11.2c"; locus "MER4_7p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0381"; repClass "LTR"; repEnd "5826"; repFamily "ERV1"; repLeft "4545"; repStart "-772"; ### MER4_7p11.2d ### chr7 rmsk gene 54740636 54744207 . + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0383"; model_cov "1508"; model_pct "22.9"; chr7 rmsk exon 54740636 54741100 3216 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0383"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "9"; chr7 rmsk exon 54741328 54741649 2449 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "-1198"; repFamily "ERV1"; repLeft "-7796"; repStart "-1437"; chr7 rmsk exon 54741646 54742015 1138 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "-5314"; repStart "1005"; chr7 rmsk exon 54742036 54742424 3501 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "2204"; repFamily "ERV1"; repLeft "-4394"; repStart "1804"; chr7 rmsk exon 54742719 54742731 3501 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "2214"; repFamily "ERV1"; repLeft "-4384"; repStart "2205"; chr7 rmsk exon 54743039 54743094 3501 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "2270"; repFamily "ERV1"; repLeft "-4328"; repStart "2215"; chr7 rmsk exon 54743397 54743622 3501 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2271"; chr7 rmsk exon 54743856 54744155 1659 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0383"; repClass "LTR"; repEnd "3039"; repFamily "ERV1"; repLeft "-3559"; repStart "2737"; chr7 rmsk exon 54744156 54744207 390 + . gene_id "MER4_7p11.2d"; transcript_id "MER4_7p11.2d"; locus "MER4_7p11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0383"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "421"; ### HERVL_7p11.2c ### chr7 rmsk gene 54949120 54952858 . - . gene_id "HERVL_7p11.2c"; transcript_id "HERVL_7p11.2c"; locus "HERVL_7p11.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0689"; model_cov "3271"; model_pct "57.9"; chr7 rmsk exon 54949120 54952355 24468 - . gene_id "HERVL_7p11.2c"; transcript_id "HERVL_7p11.2c"; locus "HERVL_7p11.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0689"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "1"; repStart "-2382"; chr7 rmsk exon 54952356 54952858 2621 - . gene_id "HERVL_7p11.2c"; transcript_id "HERVL_7p11.2c"; locus "HERVL_7p11.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0689"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-110"; repStart "0"; ### MER4_7p11.2e ### chr7 rmsk gene 55295272 55299654 . - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0384"; model_cov "2071"; model_pct "31.4"; chr7 rmsk exon 55295272 55295353 7056 - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0384"; repClass "LTR"; repEnd "2089"; repFamily "ERV1"; repLeft "2032"; repStart "-4509"; chr7 rmsk exon 55296922 55297364 7056 - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0384"; repClass "LTR"; repEnd "2031"; repFamily "ERV1"; repLeft "1600"; repStart "-4567"; chr7 rmsk exon 55297681 55298123 7056 - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0384"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "1157"; repStart "-4999"; chr7 rmsk exon 55298167 55299187 7056 - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0384"; repClass "LTR"; repEnd "1156"; repFamily "ERV1"; repLeft "15"; repStart "-5442"; chr7 rmsk exon 55299204 55299654 3265 - . gene_id "MER4_7p11.2e"; transcript_id "MER4_7p11.2e"; locus "MER4_7p11.2e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0384"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_7p11.2f ### chr7 rmsk gene 55623928 55630660 . - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0385"; model_cov "4407"; model_pct "66.8"; chr7 rmsk exon 55623928 55624062 1603 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0385"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "342"; repStart "-2"; chr7 rmsk exon 55624352 55624561 1603 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0385"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "128"; repStart "-131"; chr7 rmsk exon 55624563 55625695 9593 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "5631"; repFamily "ERV1"; repLeft "4464"; repStart "-967"; chr7 rmsk exon 55625997 55626032 9593 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "4463"; repFamily "ERV1"; repLeft "4430"; repStart "-2135"; chr7 rmsk exon 55626327 55626801 9593 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "4429"; repFamily "ERV1"; repLeft "3926"; repStart "-2169"; chr7 rmsk exon 55626798 55626827 615 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "3955"; repFamily "ERV1"; repLeft "3928"; repStart "-2643"; chr7 rmsk exon 55627145 55627679 2465 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "3294"; repFamily "ERV1"; repLeft "2737"; repStart "-3304"; chr7 rmsk exon 55627919 55627989 471 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2425"; repStart "-4103"; chr7 rmsk exon 55628220 55628761 3031 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "2429"; repFamily "ERV1"; repLeft "1820"; repStart "-4169"; chr7 rmsk exon 55628789 55628809 1269 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "990"; repStart "-5590"; chr7 rmsk exon 55628846 55629064 1269 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "764"; repStart "-5609"; chr7 rmsk exon 55629086 55629713 3877 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "680"; repFamily "ERV1"; repLeft "39"; repStart "-5918"; chr7 rmsk exon 55629731 55629877 2863 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "349"; repStart "-6038"; chr7 rmsk exon 55629903 55630224 2863 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0385"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "2"; repStart "-6250"; chr7 rmsk exon 55630228 55630660 2542 - . gene_id "MER4_7p11.2f"; transcript_id "MER4_7p11.2f"; locus "MER4_7p11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0385"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR23_7p11.2 ### chr7 rmsk gene 55630996 55632132 . + . gene_id "LTR23_7p11.2"; transcript_id "LTR23_7p11.2"; locus "LTR23_7p11.2"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0038"; model_cov "692"; model_pct "13.5"; chr7 rmsk exon 55630996 55631241 827 + . gene_id "LTR23_7p11.2"; transcript_id "LTR23_7p11.2"; locus "LTR23_7p11.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0038"; repClass "LTR"; repEnd "39"; repFamily "ERV1"; repLeft "-5084"; repStart "-203"; chr7 rmsk exon 55631406 55631743 1317 + . gene_id "LTR23_7p11.2"; transcript_id "LTR23_7p11.2"; locus "LTR23_7p11.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0038"; repClass "LTR"; repEnd "1505"; repFamily "ERV1"; repLeft "-3618"; repStart "1144"; chr7 rmsk exon 55632042 55632132 1317 + . gene_id "LTR23_7p11.2"; transcript_id "LTR23_7p11.2"; locus "LTR23_7p11.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0038"; repClass "LTR"; repEnd "1595"; repFamily "ERV1"; repLeft "-3528"; repStart "1506"; ### HML3_7p11.2b ### chr7 rmsk gene 56144893 56153451 . + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0124"; model_cov "6020"; model_pct "100.0"; chr7 rmsk exon 56144893 56145377 3274 + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0124"; repClass "LTR"; repEnd "505"; repFamily "ERVK"; repLeft "-8"; repStart "1"; chr7 rmsk exon 56145384 56146134 21056 + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0124"; repClass "LTR"; repEnd "929"; repFamily "ERVK"; repLeft "-5092"; repStart "11"; chr7 rmsk exon 56146203 56150056 21056 + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0124"; repClass "LTR"; repEnd "5648"; repFamily "ERVK"; repLeft "-373"; repStart "930"; chr7 rmsk exon 56152553 56152938 3223 + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0124"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5637"; chr7 rmsk exon 56152939 56153451 4266 + . gene_id "HML3_7p11.2b"; transcript_id "HML3_7p11.2b"; locus "HML3_7p11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0124"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_7p11.2c ### chr7 rmsk gene 56316940 56322781 . + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0125"; model_cov "4834"; model_pct "80.3"; chr7 rmsk exon 56316940 56317445 4148 + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0125"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "4"; chr7 rmsk exon 56317446 56318013 4633 + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0125"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr7 rmsk exon 56318015 56320838 24179 + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0125"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "1125"; chr7 rmsk exon 56320815 56322268 11663 + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0125"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4594"; chr7 rmsk exon 56322269 56322781 4308 + . gene_id "HML3_7p11.2c"; transcript_id "HML3_7p11.2c"; locus "HML3_7p11.2c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0125"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_7p11.2d ### chr7 rmsk gene 56606550 56607175 . - . gene_id "HERVL_7p11.2d"; transcript_id "HERVL_7p11.2d"; locus "HERVL_7p11.2d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0690"; model_cov "626"; model_pct "11.1"; chr7 rmsk exon 56606550 56607175 4482 - . gene_id "HERVL_7p11.2d"; transcript_id "HERVL_7p11.2d"; locus "HERVL_7p11.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0690"; repClass "LTR"; repEnd "2029"; repFamily "ERVL"; repLeft "1403"; repStart "-3625"; ### MER61_7p11.2 ### chr7 rmsk gene 56620420 56626030 . + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0214"; model_cov "4809"; model_pct "92.2"; chr7 rmsk exon 56620420 56620848 2390 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0214"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 56620866 56620990 598 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0214"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-5074"; repStart "19"; chr7 rmsk exon 56621052 56621627 2409 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0214"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "280"; chr7 rmsk exon 56621628 56621895 1687 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0214"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "944"; chr7 rmsk exon 56621891 56625632 14360 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0214"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1361"; chr7 rmsk exon 56625643 56626030 1758 + . gene_id "MER61_7p11.2"; transcript_id "MER61_7p11.2"; locus "MER61_7p11.2"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0214"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "11"; ### MER41_7p11.2a ### chr7 rmsk gene 57134085 57137544 . + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0262"; model_cov "1396"; model_pct "23.5"; chr7 rmsk exon 57134085 57134660 3265 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0262"; repClass "LTR"; repEnd "577"; repFamily "ERV1"; repLeft "-57"; repStart "1"; chr7 rmsk exon 57134979 57135046 299 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0262"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "-14"; repStart "561"; chr7 rmsk exon 57135052 57135401 3492 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-5598"; repStart "1"; chr7 rmsk exon 57135711 57135961 3492 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "603"; repFamily "ERV1"; repLeft "-5343"; repStart "349"; chr7 rmsk exon 57136015 57136092 3492 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "-5241"; repStart "604"; chr7 rmsk exon 57136449 57136937 2505 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "1865"; repFamily "ERV1"; repLeft "-4081"; repStart "1357"; chr7 rmsk exon 57137025 57137167 627 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "1995"; repFamily "ERV1"; repLeft "-3951"; repStart "1853"; chr7 rmsk exon 57137500 57137544 330 + . gene_id "MER41_7p11.2a"; transcript_id "MER41_7p11.2a"; locus "MER41_7p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0262"; repClass "LTR"; repEnd "2211"; repFamily "ERV1"; repLeft "-3735"; repStart "2167"; ### ERVLE_7p11.2a ### chr7 rmsk gene 57279284 57280606 . + . gene_id "ERVLE_7p11.2a"; transcript_id "ERVLE_7p11.2a"; locus "ERVLE_7p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1830"; model_cov "999"; model_pct "17.6"; chr7 rmsk exon 57279284 57279491 271 + . gene_id "ERVLE_7p11.2a"; transcript_id "ERVLE_7p11.2a"; locus "ERVLE_7p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1830"; repClass "LTR"; repEnd "4629"; repFamily "ERVL"; repLeft "-1038"; repStart "4427"; chr7 rmsk exon 57279794 57280606 1190 + . gene_id "ERVLE_7p11.2a"; transcript_id "ERVLE_7p11.2a"; locus "ERVLE_7p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1830"; repClass "LTR"; repEnd "5557"; repFamily "ERVL"; repLeft "-110"; repStart "4760"; ### MER41_7p11.2b ### chr7 rmsk gene 57443873 57448457 . - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0263"; model_cov "1086"; model_pct "18.3"; chr7 rmsk exon 57443873 57444255 2314 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0263"; repClass "LTR"; repEnd "4637"; repFamily "ERV1"; repLeft "4255"; repStart "-1309"; chr7 rmsk exon 57445891 57445991 460 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0263"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "2529"; repStart "-3319"; chr7 rmsk exon 57446541 57446799 3275 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0263"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "349"; repStart "-5338"; chr7 rmsk exon 57447097 57447447 3275 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0263"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "1"; repStart "-5598"; chr7 rmsk exon 57447453 57447518 316 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0263"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "451"; repStart "-14"; chr7 rmsk exon 57447887 57448457 3326 - . gene_id "MER41_7p11.2b"; transcript_id "MER41_7p11.2b"; locus "MER41_7p11.2b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0263"; repClass "LTR"; repEnd "576"; repFamily "ERV1"; repLeft "1"; repStart "-58"; ### ERVLE_7p11.2b ### chr7 rmsk gene 57729769 57730859 . + . gene_id "ERVLE_7p11.2b"; transcript_id "ERVLE_7p11.2b"; locus "ERVLE_7p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1832"; model_cov "836"; model_pct "14.8"; chr7 rmsk exon 57729769 57729980 336 + . gene_id "ERVLE_7p11.2b"; transcript_id "ERVLE_7p11.2b"; locus "ERVLE_7p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1832"; repClass "LTR"; repEnd "3310"; repFamily "ERVL"; repLeft "-2357"; repStart "3092"; chr7 rmsk exon 57730246 57730859 1919 + . gene_id "ERVLE_7p11.2b"; transcript_id "ERVLE_7p11.2b"; locus "ERVLE_7p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1832"; repClass "LTR"; repEnd "4568"; repFamily "ERVL"; repLeft "-1099"; repStart "3950"; ### MER41_7q11.21a ### chr7 rmsk gene 63305752 63312295 . + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0265"; model_cov "4402"; model_pct "74.0"; chr7 rmsk exon 63305752 63306322 3324 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0265"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-70"; repStart "1"; chr7 rmsk exon 63306632 63306698 3324 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0265"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "-5"; repStart "565"; chr7 rmsk exon 63306704 63307053 3559 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-5598"; repStart "1"; chr7 rmsk exon 63307361 63307609 3559 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "603"; repFamily "ERV1"; repLeft "-5343"; repStart "349"; chr7 rmsk exon 63307641 63307718 3559 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "-5241"; repStart "604"; chr7 rmsk exon 63307714 63307727 5177 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "1357"; repFamily "ERV1"; repLeft "-4589"; repStart "1344"; chr7 rmsk exon 63308042 63308053 5177 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-4584"; repStart "1358"; chr7 rmsk exon 63308085 63308570 5177 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "1912"; repFamily "ERV1"; repLeft "-4034"; repStart "1363"; chr7 rmsk exon 63308679 63308835 5177 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "2118"; repFamily "ERV1"; repLeft "-3828"; repStart "1913"; chr7 rmsk exon 63309136 63309957 5177 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2119"; chr7 rmsk exon 63309945 63310759 11486 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "4144"; repFamily "ERV1"; repLeft "-1802"; repStart "3300"; chr7 rmsk exon 63311072 63312295 11486 + . gene_id "MER41_7q11.21a"; transcript_id "MER41_7q11.21a"; locus "MER41_7q11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0265"; repClass "LTR"; repEnd "5403"; repFamily "ERV1"; repLeft "-543"; repStart "4145"; ### MER41_7q11.21b ### chr7 rmsk gene 63435897 63442437 . - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0266"; model_cov "4748"; model_pct "79.9"; chr7 rmsk exon 63435897 63437121 12411 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "5403"; repFamily "ERV1"; repLeft "4145"; repStart "-543"; chr7 rmsk exon 63437437 63439061 12411 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "4144"; repFamily "ERV1"; repLeft "2119"; repStart "-1802"; chr7 rmsk exon 63439362 63439518 5760 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "2118"; repFamily "ERV1"; repLeft "1913"; repStart "-3828"; chr7 rmsk exon 63439627 63440122 5760 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "1912"; repFamily "ERV1"; repLeft "1354"; repStart "-4034"; chr7 rmsk exon 63440470 63440547 3833 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "605"; repStart "-5240"; chr7 rmsk exon 63440579 63440827 3833 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "604"; repFamily "ERV1"; repLeft "350"; repStart "-5342"; chr7 rmsk exon 63441135 63441484 3833 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0266"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "2"; repStart "-5597"; chr7 rmsk exon 63441490 63441556 3510 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0266"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "565"; repStart "-5"; chr7 rmsk exon 63441857 63442437 3510 - . gene_id "MER41_7q11.21b"; transcript_id "MER41_7q11.21b"; locus "MER41_7q11.21b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0266"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "-70"; ### MER101_7q11.21a ### chr7 rmsk gene 64049062 64050274 . - . gene_id "MER101_7q11.21a"; transcript_id "MER101_7q11.21a"; locus "MER101_7q11.21a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0207"; model_cov "1377"; model_pct "20.7"; chr7 rmsk exon 64049062 64050274 2664 - . gene_id "MER101_7q11.21a"; transcript_id "MER101_7q11.21a"; locus "MER101_7q11.21a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0207"; repClass "LTR"; repEnd "3209"; repFamily "ERV1"; repLeft "1832"; repStart "-3430"; ### MER41_7q11.21c ### chr7 rmsk gene 64193328 64194310 . + . gene_id "MER41_7q11.21c"; transcript_id "MER41_7q11.21c"; locus "MER41_7q11.21c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0268"; model_cov "638"; model_pct "10.7"; chr7 rmsk exon 64193328 64193608 3075 + . gene_id "MER41_7q11.21c"; transcript_id "MER41_7q11.21c"; locus "MER41_7q11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0268"; repClass "LTR"; repEnd "356"; repFamily "ERV1"; repLeft "-5590"; repStart "71"; chr7 rmsk exon 64193897 64194154 3075 + . gene_id "MER41_7q11.21c"; transcript_id "MER41_7q11.21c"; locus "MER41_7q11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0268"; repClass "LTR"; repEnd "607"; repFamily "ERV1"; repLeft "-5339"; repStart "357"; chr7 rmsk exon 64194210 64194310 467 + . gene_id "MER41_7q11.21c"; transcript_id "MER41_7q11.21c"; locus "MER41_7q11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0268"; repClass "LTR"; repEnd "2629"; repFamily "ERV1"; repLeft "-3317"; repStart "2526"; ### MER41_7q11.21d ### chr7 rmsk gene 64194342 64197966 . + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; category "internal"; intModel "MER41-int"; locid "MER41-int_0269"; model_cov "2876"; model_pct "48.4"; chr7 rmsk exon 64194342 64194420 581 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "-5241"; repStart "627"; chr7 rmsk exon 64194728 64195232 5041 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "1934"; repFamily "ERV1"; repLeft "-4012"; repStart "1344"; chr7 rmsk exon 64195330 64195438 5041 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "2063"; repFamily "ERV1"; repLeft "-3883"; repStart "1935"; chr7 rmsk exon 64195753 64195798 5041 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "2128"; repFamily "ERV1"; repLeft "-3818"; repStart "2064"; chr7 rmsk exon 64196093 64197477 5041 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2030"; repStart "2129"; chr7 rmsk exon 64197768 64197966 3975 + . gene_id "MER41_7q11.21d"; transcript_id "MER41_7q11.21d"; locus "MER41_7q11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0269"; repClass "LTR"; repEnd "4146"; repFamily "ERV1"; repLeft "-1800"; repStart "3917"; ### MER41_7q11.21e ### chr7 rmsk gene 64198767 64201287 . - . gene_id "MER41_7q11.21e"; transcript_id "MER41_7q11.21e"; locus "MER41_7q11.21e"; category "internal"; intModel "MER41-int"; locid "MER41-int_0270"; model_cov "2492"; model_pct "41.9"; chr7 rmsk exon 64198767 64200003 12769 - . gene_id "MER41_7q11.21e"; transcript_id "MER41_7q11.21e"; locus "MER41_7q11.21e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0270"; repClass "LTR"; repEnd "5401"; repFamily "ERV1"; repLeft "4137"; repStart "-545"; chr7 rmsk exon 64200322 64201287 12769 - . gene_id "MER41_7q11.21e"; transcript_id "MER41_7q11.21e"; locus "MER41_7q11.21e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0270"; repClass "LTR"; repEnd "4136"; repFamily "ERV1"; repLeft "2908"; repStart "-1810"; ### MER41_7q11.21f ### chr7 rmsk gene 64201339 64202470 . - . gene_id "MER41_7q11.21f"; transcript_id "MER41_7q11.21f"; locus "MER41_7q11.21f"; category "internal"; intModel "MER41-int"; locid "MER41-int_0271"; model_cov "1002"; model_pct "16.9"; chr7 rmsk exon 64201339 64201992 12769 - . gene_id "MER41_7q11.21f"; transcript_id "MER41_7q11.21f"; locus "MER41_7q11.21f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0271"; repClass "LTR"; repEnd "4136"; repFamily "ERV1"; repLeft "3303"; repStart "-1810"; chr7 rmsk exon 64202315 64202470 5836 - . gene_id "MER41_7q11.21f"; transcript_id "MER41_7q11.21f"; locus "MER41_7q11.21f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0271"; repClass "LTR"; repEnd "2073"; repFamily "ERV1"; repLeft "1904"; repStart "-3873"; ### MER41_7q11.21g ### chr7 rmsk gene 64202578 64205419 . - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0272"; model_cov "1252"; model_pct "21.1"; chr7 rmsk exon 64202578 64203088 5836 - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0272"; repClass "LTR"; repEnd "2073"; repFamily "ERV1"; repLeft "1515"; repStart "-3873"; chr7 rmsk exon 64203421 64203779 3482 - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0272"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "357"; repStart "-5240"; chr7 rmsk exon 64204098 64204476 3482 - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0272"; repClass "LTR"; repEnd "-1454"; repFamily "ERV1"; repLeft "-1799"; repStart "-7400"; chr7 rmsk exon 64204492 64204557 3916 - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0272"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "565"; repStart "-5"; chr7 rmsk exon 64204865 64205419 3916 - . gene_id "MER41_7q11.21g"; transcript_id "MER41_7q11.21g"; locus "MER41_7q11.21g"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0272"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "-70"; ### MER41_7q11.21h ### chr7 rmsk gene 64243876 64247361 . - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0273"; model_cov "1420"; model_pct "23.9"; chr7 rmsk exon 64243876 64243934 398 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "2225"; repFamily "ERV1"; repLeft "2167"; repStart "-3721"; chr7 rmsk exon 64244271 64244412 780 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "1996"; repFamily "ERV1"; repLeft "1855"; repStart "-3950"; chr7 rmsk exon 64244507 64245015 2850 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "1865"; repFamily "ERV1"; repLeft "1346"; repStart "-4081"; chr7 rmsk exon 64245335 64245410 3710 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "610"; repStart "-5240"; chr7 rmsk exon 64245475 64245724 3710 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "358"; repStart "-5337"; chr7 rmsk exon 64246023 64246371 3710 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0273"; repClass "LTR"; repEnd "357"; repFamily "ERV1"; repLeft "2"; repStart "-5589"; chr7 rmsk exon 64246377 64246442 3908 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0273"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "565"; repStart "-5"; chr7 rmsk exon 64246792 64247361 3908 - . gene_id "MER41_7q11.21h"; transcript_id "MER41_7q11.21h"; locus "MER41_7q11.21h"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0273"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "-70"; ### MER101_7q11.21b ### chr7 rmsk gene 64317855 64318794 . - . gene_id "MER101_7q11.21b"; transcript_id "MER101_7q11.21b"; locus "MER101_7q11.21b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0208"; model_cov "1559"; model_pct "23.5"; chr7 rmsk exon 64317855 64318794 2764 - . gene_id "MER101_7q11.21b"; transcript_id "MER101_7q11.21b"; locus "MER101_7q11.21b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0208"; repClass "LTR"; repEnd "4675"; repFamily "ERV1"; repLeft "3116"; repStart "-1964"; ### MER61_7q11.21 ### chr7 rmsk gene 64362011 64367703 . - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0215"; model_cov "4949"; model_pct "94.9"; chr7 rmsk exon 64362011 64362419 1938 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0215"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "14"; repStart "0"; chr7 rmsk exon 64362430 64366083 10033 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0215"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1361"; repStart "0"; chr7 rmsk exon 64366079 64366340 1688 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0215"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "944"; repStart "-4004"; chr7 rmsk exon 64366348 64366721 1767 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0215"; repClass "LTR"; repEnd "836"; repFamily "ERV1"; repLeft "468"; repStart "-4381"; chr7 rmsk exon 64366889 64367267 640 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0215"; repClass "LTR"; repEnd "475"; repFamily "ERV1"; repLeft "19"; repStart "-4742"; chr7 rmsk exon 64367285 64367703 2398 - . gene_id "MER61_7q11.21"; transcript_id "MER61_7q11.21"; locus "MER61_7q11.21"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0215"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "5"; repStart "-3"; ### HERVL_7q11.21a ### chr7 rmsk gene 64401724 64404254 . + . gene_id "HERVL_7q11.21a"; transcript_id "HERVL_7q11.21a"; locus "HERVL_7q11.21a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0692"; model_cov "2024"; model_pct "35.8"; chr7 rmsk exon 64401724 64402111 2834 + . gene_id "HERVL_7q11.21a"; transcript_id "HERVL_7q11.21a"; locus "HERVL_7q11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0692"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr7 rmsk exon 64402219 64404254 15261 + . gene_id "HERVL_7q11.21a"; transcript_id "HERVL_7q11.21a"; locus "HERVL_7q11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0692"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3629"; repStart "1"; ### PRIMA4_7q11.21a ### chr7 rmsk gene 64480396 64481688 . - . gene_id "PRIMA4_7q11.21a"; transcript_id "PRIMA4_7q11.21a"; locus "PRIMA4_7q11.21a"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0103"; model_cov "1397"; model_pct "16.9"; chr7 rmsk exon 64480396 64481688 7296 - . gene_id "PRIMA4_7q11.21a"; transcript_id "PRIMA4_7q11.21a"; locus "PRIMA4_7q11.21a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0103"; repClass "LTR"; repEnd "4037"; repFamily "ERV1"; repLeft "2640"; repStart "-4233"; ### MER41_7q11.21i ### chr7 rmsk gene 64484420 64488772 . + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0274"; model_cov "3543"; model_pct "59.6"; chr7 rmsk exon 64484420 64484525 424 + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0274"; repClass "LTR"; repEnd "1569"; repFamily "ERV1"; repLeft "-4377"; repStart "1469"; chr7 rmsk exon 64484513 64484645 647 + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0274"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-3932"; repStart "1866"; chr7 rmsk exon 64484645 64484976 13341 + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0274"; repClass "LTR"; repEnd "2939"; repFamily "ERV1"; repLeft "-3007"; repStart "2648"; chr7 rmsk exon 64485289 64488225 13341 + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0274"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2940"; chr7 rmsk exon 64488226 64488772 4228 + . gene_id "MER41_7q11.21i"; transcript_id "MER41_7q11.21i"; locus "MER41_7q11.21i"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0274"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_7q11.21b ### chr7 rmsk gene 64488773 64492642 . - . gene_id "PRIMA4_7q11.21b"; transcript_id "PRIMA4_7q11.21b"; locus "PRIMA4_7q11.21b"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0104"; model_cov "2639"; model_pct "31.9"; chr7 rmsk exon 64488773 64489647 14348 - . gene_id "PRIMA4_7q11.21b"; transcript_id "PRIMA4_7q11.21b"; locus "PRIMA4_7q11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0104"; repClass "LTR"; repEnd "2643"; repFamily "ERV1"; repLeft "1759"; repStart "-5627"; chr7 rmsk exon 64489941 64491251 14348 - . gene_id "PRIMA4_7q11.21b"; transcript_id "PRIMA4_7q11.21b"; locus "PRIMA4_7q11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0104"; repClass "LTR"; repEnd "1758"; repFamily "ERV1"; repLeft "405"; repStart "-6512"; chr7 rmsk exon 64491869 64492191 14348 - . gene_id "PRIMA4_7q11.21b"; transcript_id "PRIMA4_7q11.21b"; locus "PRIMA4_7q11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0104"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "2"; repStart "-7866"; chr7 rmsk exon 64492192 64492642 2062 - . gene_id "PRIMA4_7q11.21b"; transcript_id "PRIMA4_7q11.21b"; locus "PRIMA4_7q11.21b"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0104"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "53"; repStart "0"; ### LTR25_7q11.21 ### chr7 rmsk gene 64508618 64516308 . + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0063"; model_cov "5105"; model_pct "71.0"; chr7 rmsk exon 64508618 64510097 7246 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "1833"; repFamily "ERV1"; repLeft "-5355"; repStart "262"; chr7 rmsk exon 64510093 64510628 2204 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "2945"; repFamily "ERV1"; repLeft "-4243"; repStart "2427"; chr7 rmsk exon 64510954 64510989 631 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "3214"; repFamily "ERV1"; repLeft "-3974"; repStart "3182"; chr7 rmsk exon 64511292 64511776 10718 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "3773"; repFamily "ERV1"; repLeft "-3415"; repStart "3215"; chr7 rmsk exon 64512073 64512167 10718 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "3870"; repFamily "ERV1"; repLeft "-3318"; repStart "3774"; chr7 rmsk exon 64512482 64513650 10718 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "5131"; repFamily "ERV1"; repLeft "-2057"; repStart "3871"; chr7 rmsk exon 64513944 64514761 10718 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "5854"; repFamily "ERV1"; repLeft "-1334"; repStart "5132"; chr7 rmsk exon 64515091 64515279 10718 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "6042"; repFamily "ERV1"; repLeft "-1146"; repStart "5855"; chr7 rmsk exon 64515294 64515462 723 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "7027"; chr7 rmsk exon 64515463 64516308 4480 + . gene_id "LTR25_7q11.21"; transcript_id "LTR25_7q11.21"; locus "LTR25_7q11.21"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0063"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HUERSP3_7q11.21a ### chr7 rmsk gene 64618066 64626253 . + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0089"; model_cov "5435"; model_pct "60.9"; chr7 rmsk exon 64618066 64618676 2664 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 64618712 64619231 2342 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "570"; repFamily "ERV1"; repLeft "-8349"; repStart "26"; chr7 rmsk exon 64619247 64620877 6753 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "2652"; repFamily "ERV1"; repLeft "-6267"; repStart "768"; chr7 rmsk exon 64621169 64621730 6472 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "3200"; repFamily "ERV1"; repLeft "-5719"; repStart "2653"; chr7 rmsk exon 64621718 64621879 465 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr7 rmsk exon 64621881 64622810 12040 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "5841"; repFamily "ERV1"; repLeft "-3078"; repStart "4901"; chr7 rmsk exon 64623114 64623356 12040 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "6105"; repFamily "ERV1"; repLeft "-2814"; repStart "5842"; chr7 rmsk exon 64623661 64623950 12040 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "-2532"; repStart "6106"; chr7 rmsk exon 64624262 64624780 12040 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "6908"; repFamily "ERV1"; repLeft "-2011"; repStart "6388"; chr7 rmsk exon 64624808 64624926 657 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "-1937"; repStart "6865"; chr7 rmsk exon 64625394 64625647 1211 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "8912"; repFamily "ERV1"; repLeft "-7"; repStart "8706"; chr7 rmsk exon 64625654 64626253 3000 + . gene_id "HUERSP3_7q11.21a"; transcript_id "HUERSP3_7q11.21a"; locus "HUERSP3_7q11.21a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0089"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_7q11.21 ### chr7 rmsk gene 64679550 64686902 . + . gene_id "HERVH_7q11.21"; transcript_id "HERVH_7q11.21"; locus "HERVH_7q11.21"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0641"; model_cov "8142"; model_pct "100.0"; chr7 rmsk exon 64679550 64684603 11171 + . gene_id "HERVH_7q11.21"; transcript_id "HERVH_7q11.21"; locus "HERVH_7q11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0641"; repClass "LTR"; repEnd "5498"; repFamily "ERV1"; repLeft "-2215"; repStart "728"; chr7 rmsk exon 64684607 64686521 8342 + . gene_id "HERVH_7q11.21"; transcript_id "HERVH_7q11.21"; locus "HERVH_7q11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0641"; repClass "LTR"; repEnd "7386"; repFamily "ERV1"; repLeft "-327"; repStart "4014"; chr7 rmsk exon 64686616 64686737 410 + . gene_id "HERVH_7q11.21"; transcript_id "HERVH_7q11.21"; locus "HERVH_7q11.21"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0641"; repClass "LTR"; repEnd "154"; repFamily "ERV1"; repLeft "-317"; repStart "26"; chr7 rmsk exon 64686766 64686902 565 + . gene_id "HERVH_7q11.21"; transcript_id "HERVH_7q11.21"; locus "HERVH_7q11.21"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0641"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "-27"; repStart "307"; ### PABLA_7q11.21a ### chr7 rmsk gene 64745847 64750487 . - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0072"; model_cov "3322"; model_pct "66.2"; chr7 rmsk exon 64745847 64746181 2613 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "87"; repStart "-236"; chr7 rmsk exon 64746497 64746578 608 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "1"; repStart "-578"; chr7 rmsk exon 64746579 64747270 28756 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4321"; repStart "0"; chr7 rmsk exon 64747561 64748686 28756 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "4320"; repFamily "ERV1"; repLeft "3215"; repStart "-695"; chr7 rmsk exon 64748980 64749071 28756 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "3214"; repFamily "ERV1"; repLeft "3151"; repStart "-1801"; chr7 rmsk exon 64749201 64750487 28756 - . gene_id "PABLA_7q11.21a"; transcript_id "PABLA_7q11.21a"; locus "PABLA_7q11.21a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0072"; repClass "LTR"; repEnd "3150"; repFamily "ERV1"; repLeft "1690"; repStart "-1865"; ### PABLA_7q11.21b ### chr7 rmsk gene 64750700 64753220 . - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0073"; model_cov "1686"; model_pct "33.6"; chr7 rmsk exon 64750700 64751040 28756 - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0073"; repClass "LTR"; repEnd "3150"; repFamily "ERV1"; repLeft "2762"; repStart "-1865"; chr7 rmsk exon 64751342 64751878 28756 - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0073"; repClass "LTR"; repEnd "1300"; repFamily "ERV1"; repLeft "775"; repStart "-3715"; chr7 rmsk exon 64752171 64752910 28756 - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0073"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "1"; repStart "-4241"; chr7 rmsk exon 64752911 64753046 758 - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0073"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "501"; repStart "0"; chr7 rmsk exon 64753036 64753220 1330 - . gene_id "PABLA_7q11.21b"; transcript_id "PABLA_7q11.21b"; locus "PABLA_7q11.21b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0073"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "1"; repStart "-466"; ### HERV9_7q11.21 ### chr7 rmsk gene 64757090 64759565 . - . gene_id "HERV9_7q11.21"; transcript_id "HERV9_7q11.21"; locus "HERV9_7q11.21"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0082"; model_cov "1919"; model_pct "22.7"; chr7 rmsk exon 64757090 64757657 3904 - . gene_id "HERV9_7q11.21"; transcript_id "HERV9_7q11.21"; locus "HERV9_7q11.21"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0082"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 64757658 64759492 14815 - . gene_id "HERV9_7q11.21"; transcript_id "HERV9_7q11.21"; locus "HERV9_7q11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0082"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "6599"; repStart "0"; chr7 rmsk exon 64759483 64759565 720 - . gene_id "HERV9_7q11.21"; transcript_id "HERV9_7q11.21"; locus "HERV9_7q11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0082"; repClass "LTR"; repEnd "6440"; repFamily "ERV1"; repLeft "6358"; repStart "-1996"; ### HERVFC1_7q11.21 ### chr7 rmsk gene 64834895 64840158 . - . gene_id "HERVFC1_7q11.21"; transcript_id "HERVFC1_7q11.21"; locus "HERVFC1_7q11.21"; category "prototype"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0002"; model_cov "4628"; model_pct "100.0"; chr7 rmsk exon 64834895 64835237 2766 - . gene_id "HERVFC1_7q11.21"; transcript_id "HERVFC1_7q11.21"; locus "HERVFC1_7q11.21"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0002"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 64835238 64839812 38417 - . gene_id "HERVFC1_7q11.21"; transcript_id "HERVFC1_7q11.21"; locus "HERVFC1_7q11.21"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0002"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 64839813 64840158 2782 - . gene_id "HERVFC1_7q11.21"; transcript_id "HERVFC1_7q11.21"; locus "HERVFC1_7q11.21"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0002"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_7q11.21 ### chr7 rmsk gene 64948007 64950796 . + . gene_id "HML3_7q11.21"; transcript_id "HML3_7q11.21"; locus "HML3_7q11.21"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0126"; model_cov "2288"; model_pct "38.0"; chr7 rmsk exon 64948007 64950297 17613 + . gene_id "HML3_7q11.21"; transcript_id "HML3_7q11.21"; locus "HML3_7q11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0126"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3733"; chr7 rmsk exon 64950303 64950796 3751 + . gene_id "HML3_7q11.21"; transcript_id "HML3_7q11.21"; locus "HML3_7q11.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0126"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "5"; ### HUERSP3_7q11.21b ### chr7 rmsk gene 64951152 64953114 . - . gene_id "HUERSP3_7q11.21b"; transcript_id "HUERSP3_7q11.21b"; locus "HUERSP3_7q11.21b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0090"; model_cov "1450"; model_pct "16.3"; chr7 rmsk exon 64951152 64951339 690 - . gene_id "HUERSP3_7q11.21b"; transcript_id "HUERSP3_7q11.21b"; locus "HUERSP3_7q11.21b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0090"; repClass "LTR"; repEnd "8842"; repFamily "ERV1"; repLeft "8701"; repStart "-77"; chr7 rmsk exon 64951814 64951923 342 - . gene_id "HUERSP3_7q11.21b"; transcript_id "HUERSP3_7q11.21b"; locus "HUERSP3_7q11.21b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0090"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "6874"; repStart "-1937"; chr7 rmsk exon 64951935 64952671 3901 - . gene_id "HUERSP3_7q11.21b"; transcript_id "HUERSP3_7q11.21b"; locus "HUERSP3_7q11.21b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0090"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr7 rmsk exon 64952658 64953114 2784 - . gene_id "HUERSP3_7q11.21b"; transcript_id "HUERSP3_7q11.21b"; locus "HUERSP3_7q11.21b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0090"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "5125"; repStart "-3343"; ### HERV3_7q11.21 ### chr7 rmsk gene 64990324 64999936 . - . gene_id "HERV3_7q11.21"; transcript_id "HERV3_7q11.21"; locus "HERV3_7q11.21"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0030"; model_cov "8424"; model_pct "100.0"; chr7 rmsk exon 64990324 64990915 2895 - . gene_id "HERV3_7q11.21"; transcript_id "HERV3_7q11.21"; locus "HERV3_7q11.21"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0030"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 64990916 64999343 51583 - . gene_id "HERV3_7q11.21"; transcript_id "HERV3_7q11.21"; locus "HERV3_7q11.21"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0030"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr7 rmsk exon 64999344 64999936 2902 - . gene_id "HERV3_7q11.21"; transcript_id "HERV3_7q11.21"; locus "HERV3_7q11.21"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0030"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLB_7q11.21 ### chr7 rmsk gene 65302904 65311859 . + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0049"; model_cov "7118"; model_pct "99.9"; chr7 rmsk exon 65302904 65303592 1201 + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0049"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 65303595 65305650 32397 + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0049"; repClass "LTR"; repEnd "2100"; repFamily "ERV1"; repLeft "-5022"; repStart "2"; chr7 rmsk exon 65305934 65306049 32397 + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0049"; repClass "LTR"; repEnd "2204"; repFamily "ERV1"; repLeft "-4918"; repStart "2101"; chr7 rmsk exon 65306354 65311227 32397 + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0049"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "0"; repStart "2205"; chr7 rmsk exon 65311228 65311859 1366 + . gene_id "PABLB_7q11.21"; transcript_id "PABLB_7q11.21"; locus "PABLB_7q11.21"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0049"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_7q11.21c ### chr7 rmsk gene 65403922 65406831 . + . gene_id "HUERSP3_7q11.21c"; transcript_id "HUERSP3_7q11.21c"; locus "HUERSP3_7q11.21c"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0091"; model_cov "2940"; model_pct "33.0"; chr7 rmsk exon 65403922 65406831 17047 + . gene_id "HUERSP3_7q11.21c"; transcript_id "HUERSP3_7q11.21c"; locus "HUERSP3_7q11.21c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0091"; repClass "LTR"; repEnd "3990"; repFamily "ERV1"; repLeft "-4929"; repStart "1050"; ### HERVFH21_7q11.21 ### chr7 rmsk gene 65475783 65479612 . + . gene_id "HERVFH21_7q11.21"; transcript_id "HERVFH21_7q11.21"; locus "HERVFH21_7q11.21"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0019"; model_cov "2980"; model_pct "45.6"; chr7 rmsk exon 65475783 65476228 2272 + . gene_id "HERVFH21_7q11.21"; transcript_id "HERVFH21_7q11.21"; locus "HERVFH21_7q11.21"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0019"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 65476279 65477779 10135 + . gene_id "HERVFH21_7q11.21"; transcript_id "HERVFH21_7q11.21"; locus "HERVFH21_7q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0019"; repClass "LTR"; repEnd "1515"; repFamily "ERV1"; repLeft "-5014"; repStart "64"; chr7 rmsk exon 65478074 65479612 10135 + . gene_id "HERVFH21_7q11.21"; transcript_id "HERVFH21_7q11.21"; locus "HERVFH21_7q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0019"; repClass "LTR"; repEnd "3045"; repFamily "ERV1"; repLeft "-3484"; repStart "1516"; ### HML2_7q11.21 ### chr7 rmsk gene 66004684 66007803 . - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0058"; model_cov "2029"; model_pct "26.9"; chr7 rmsk exon 66004684 66005676 8096 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 66005766 66007803 11693 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5418"; repStart "-89"; ### ERVLE_7q11.21 ### chr7 rmsk gene 66304013 66309489 . - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1839"; model_cov "2679"; model_pct "47.3"; chr7 rmsk exon 66304013 66304134 493 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "510"; repStart "0"; chr7 rmsk exon 66304382 66304506 463 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "37"; repStart "-453"; chr7 rmsk exon 66304560 66304816 2582 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "5661"; repFamily "ERVL"; repLeft "5399"; repStart "-6"; chr7 rmsk exon 66305119 66305745 2582 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "4764"; repStart "-269"; chr7 rmsk exon 66307418 66308117 2365 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "3707"; repStart "-1219"; chr7 rmsk exon 66308121 66308325 869 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "3327"; repFamily "ERVL"; repLeft "3122"; repStart "-2340"; chr7 rmsk exon 66308331 66308444 582 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "2164"; repStart "-3387"; chr7 rmsk exon 66308456 66308906 2763 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "1157"; repStart "-4072"; chr7 rmsk exon 66309198 66309489 2763 - . gene_id "ERVLE_7q11.21"; transcript_id "ERVLE_7q11.21"; locus "ERVLE_7q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1839"; repClass "LTR"; repEnd "1156"; repFamily "ERVL"; repLeft "873"; repStart "-4511"; ### HERVL_7q11.21b ### chr7 rmsk gene 66906390 66912591 . - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_0693"; model_cov "3325"; model_pct "58.8"; chr7 rmsk exon 66906390 66906836 3229 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr7 rmsk exon 66906837 66909329 19171 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3064"; repStart "0"; chr7 rmsk exon 66909345 66909789 3243 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 66910925 66911157 490 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4202"; repStart "-1218"; chr7 rmsk exon 66911763 66911853 490 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "4193"; repFamily "ERVL"; repLeft "4111"; repStart "-1461"; chr7 rmsk exon 66912170 66912591 490 - . gene_id "HERVL_7q11.21b"; transcript_id "HERVL_7q11.21b"; locus "HERVL_7q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0693"; repClass "LTR"; repEnd "4110"; repFamily "ERVL"; repLeft "3691"; repStart "-1544"; ### MER101_7q11.21c ### chr7 rmsk gene 67060390 67062485 . - . gene_id "MER101_7q11.21c"; transcript_id "MER101_7q11.21c"; locus "MER101_7q11.21c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0210"; model_cov "2152"; model_pct "32.4"; chr7 rmsk exon 67060390 67060640 1043 - . gene_id "MER101_7q11.21c"; transcript_id "MER101_7q11.21c"; locus "MER101_7q11.21c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0210"; repClass "LTR"; repEnd "6278"; repFamily "ERV1"; repLeft "6005"; repStart "-361"; chr7 rmsk exon 67060644 67060945 1816 - . gene_id "MER101_7q11.21c"; transcript_id "MER101_7q11.21c"; locus "MER101_7q11.21c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0210"; repClass "LTR"; repEnd "5897"; repFamily "ERV1"; repLeft "5582"; repStart "-742"; chr7 rmsk exon 67061239 67062128 3632 - . gene_id "MER101_7q11.21c"; transcript_id "MER101_7q11.21c"; locus "MER101_7q11.21c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0210"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "3915"; repStart "-1228"; chr7 rmsk exon 67062421 67062485 1109 - . gene_id "MER101_7q11.21c"; transcript_id "MER101_7q11.21c"; locus "MER101_7q11.21c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0210"; repClass "LTR"; repEnd "4908"; repFamily "ERV1"; repLeft "4840"; repStart "-1731"; ### ERVLE_7q11.22a ### chr7 rmsk gene 67840051 67841073 . + . gene_id "ERVLE_7q11.22a"; transcript_id "ERVLE_7q11.22a"; locus "ERVLE_7q11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1842"; model_cov "796"; model_pct "14.0"; chr7 rmsk exon 67840051 67840692 1837 + . gene_id "ERVLE_7q11.22a"; transcript_id "ERVLE_7q11.22a"; locus "ERVLE_7q11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1842"; repClass "LTR"; repEnd "2642"; repFamily "ERVL"; repLeft "-3025"; repStart "1900"; chr7 rmsk exon 67841011 67841073 1837 + . gene_id "ERVLE_7q11.22a"; transcript_id "ERVLE_7q11.22a"; locus "ERVLE_7q11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1842"; repClass "LTR"; repEnd "2697"; repFamily "ERVL"; repLeft "-2970"; repStart "2643"; ### ERVLE_7q11.22b ### chr7 rmsk gene 67905520 67911422 . + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1843"; model_cov "3210"; model_pct "56.6"; chr7 rmsk exon 67905520 67905638 269 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "716"; repFamily "ERVL"; repLeft "-4951"; repStart "594"; chr7 rmsk exon 67906746 67907692 2889 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "2194"; repFamily "ERVL"; repLeft "-3473"; repStart "1130"; chr7 rmsk exon 67908255 67909455 2889 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "3473"; repFamily "ERVL"; repLeft "-2194"; repStart "2195"; chr7 rmsk exon 67910403 67910526 369 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "3752"; repFamily "ERVL"; repLeft "-1915"; repStart "3626"; chr7 rmsk exon 67910534 67910655 294 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "3920"; repFamily "ERVL"; repLeft "-1747"; repStart "3779"; chr7 rmsk exon 67910938 67911111 294 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "4096"; repFamily "ERVL"; repLeft "-1571"; repStart "3921"; chr7 rmsk exon 67911109 67911422 593 + . gene_id "ERVLE_7q11.22b"; transcript_id "ERVLE_7q11.22b"; locus "ERVLE_7q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1843"; repClass "LTR"; repEnd "4728"; repFamily "ERVL"; repLeft "-939"; repStart "4424"; ### ERVLE_7q11.22c ### chr7 rmsk gene 67911947 67913091 . + . gene_id "ERVLE_7q11.22c"; transcript_id "ERVLE_7q11.22c"; locus "ERVLE_7q11.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1844"; model_cov "846"; model_pct "14.9"; chr7 rmsk exon 67911947 67912217 1155 + . gene_id "ERVLE_7q11.22c"; transcript_id "ERVLE_7q11.22c"; locus "ERVLE_7q11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1844"; repClass "LTR"; repEnd "4704"; repFamily "ERVL"; repLeft "-963"; repStart "4442"; chr7 rmsk exon 67912506 67913091 1155 + . gene_id "ERVLE_7q11.22c"; transcript_id "ERVLE_7q11.22c"; locus "ERVLE_7q11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1844"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "-378"; repStart "4705"; ### ERVLE_7q11.22d ### chr7 rmsk gene 68123234 68124495 . + . gene_id "ERVLE_7q11.22d"; transcript_id "ERVLE_7q11.22d"; locus "ERVLE_7q11.22d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1845"; model_cov "796"; model_pct "14.0"; chr7 rmsk exon 68123234 68123401 304 + . gene_id "ERVLE_7q11.22d"; transcript_id "ERVLE_7q11.22d"; locus "ERVLE_7q11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1845"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "-4884"; repStart "614"; chr7 rmsk exon 68123527 68123949 784 + . gene_id "ERVLE_7q11.22d"; transcript_id "ERVLE_7q11.22d"; locus "ERVLE_7q11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1845"; repClass "LTR"; repEnd "5434"; repFamily "ERVL"; repLeft "-233"; repStart "4995"; chr7 rmsk exon 68124308 68124495 784 + . gene_id "ERVLE_7q11.22d"; transcript_id "ERVLE_7q11.22d"; locus "ERVLE_7q11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1845"; repClass "LTR"; repEnd "5623"; repFamily "ERVL"; repLeft "-44"; repStart "5435"; ### ERVLB4_7q11.22a ### chr7 rmsk gene 68271503 68275258 . + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0811"; model_cov "2318"; model_pct "40.6"; chr7 rmsk exon 68271503 68271623 11411 + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0811"; repClass "LTR"; repEnd "3523"; repFamily "ERVL"; repLeft "-2191"; repStart "3402"; chr7 rmsk exon 68271941 68273291 11411 + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0811"; repClass "LTR"; repEnd "4852"; repFamily "ERVL"; repLeft "-862"; repStart "3524"; chr7 rmsk exon 68273612 68274523 11411 + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0811"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "-5"; repStart "4840"; chr7 rmsk exon 68274530 68274987 1730 + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0811"; repClass "LTR"; repEnd "501"; repFamily "ERVL"; repLeft "-19"; repStart "-31"; chr7 rmsk exon 68275203 68275258 323 + . gene_id "ERVLB4_7q11.22a"; transcript_id "ERVLB4_7q11.22a"; locus "ERVLB4_7q11.22a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0811"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "459"; ### ERV316A3_7q11.22 ### chr7 rmsk gene 68341498 68343492 . - . gene_id "ERV316A3_7q11.22"; transcript_id "ERV316A3_7q11.22"; locus "ERV316A3_7q11.22"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1388"; model_cov "1018"; model_pct "19.5"; chr7 rmsk exon 68341498 68341735 1425 - . gene_id "ERV316A3_7q11.22"; transcript_id "ERV316A3_7q11.22"; locus "ERV316A3_7q11.22"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1388"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "184"; repStart "-23"; chr7 rmsk exon 68342036 68342219 1425 - . gene_id "ERV316A3_7q11.22"; transcript_id "ERV316A3_7q11.22"; locus "ERV316A3_7q11.22"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1388"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "1"; repStart "-280"; chr7 rmsk exon 68342260 68342326 277 - . gene_id "ERV316A3_7q11.22"; transcript_id "ERV316A3_7q11.22"; locus "ERV316A3_7q11.22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1388"; repClass "LTR"; repEnd "5150"; repFamily "ERVL"; repLeft "5074"; repStart "-76"; chr7 rmsk exon 68342543 68343492 3000 - . gene_id "ERV316A3_7q11.22"; transcript_id "ERV316A3_7q11.22"; locus "ERV316A3_7q11.22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1388"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "4051"; repStart "-233"; ### ERVLB4_7q11.22b ### chr7 rmsk gene 68425837 68427015 . + . gene_id "ERVLB4_7q11.22b"; transcript_id "ERVLB4_7q11.22b"; locus "ERVLB4_7q11.22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0812"; model_cov "1202"; model_pct "21.0"; chr7 rmsk exon 68425837 68427015 2033 + . gene_id "ERVLB4_7q11.22b"; transcript_id "ERVLB4_7q11.22b"; locus "ERVLB4_7q11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0812"; repClass "LTR"; repEnd "5332"; repFamily "ERVL"; repLeft "-382"; repStart "4130"; ### ERVLE_7q11.22e ### chr7 rmsk gene 68556590 68559051 . - . gene_id "ERVLE_7q11.22e"; transcript_id "ERVLE_7q11.22e"; locus "ERVLE_7q11.22e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1847"; model_cov "2018"; model_pct "35.6"; chr7 rmsk exon 68556590 68557285 1474 - . gene_id "ERVLE_7q11.22e"; transcript_id "ERVLE_7q11.22e"; locus "ERVLE_7q11.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1847"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "3822"; repStart "-1103"; chr7 rmsk exon 68557528 68558134 2295 - . gene_id "ERVLE_7q11.22e"; transcript_id "ERVLE_7q11.22e"; locus "ERVLE_7q11.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1847"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "2609"; repStart "-2366"; chr7 rmsk exon 68558492 68559051 2295 - . gene_id "ERVLE_7q11.22e"; transcript_id "ERVLE_7q11.22e"; locus "ERVLE_7q11.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1847"; repClass "LTR"; repEnd "2671"; repFamily "ERVL"; repLeft "2087"; repStart "-2996"; ### ERVLE_7q11.22f ### chr7 rmsk gene 68559069 68560375 . - . gene_id "ERVLE_7q11.22f"; transcript_id "ERVLE_7q11.22f"; locus "ERVLE_7q11.22f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1848"; model_cov "720"; model_pct "12.7"; chr7 rmsk exon 68559069 68559181 373 - . gene_id "ERVLE_7q11.22f"; transcript_id "ERVLE_7q11.22f"; locus "ERVLE_7q11.22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1848"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "2562"; repStart "-2986"; chr7 rmsk exon 68559889 68560375 896 - . gene_id "ERVLE_7q11.22f"; transcript_id "ERVLE_7q11.22f"; locus "ERVLE_7q11.22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1848"; repClass "LTR"; repEnd "1868"; repFamily "ERVL"; repLeft "1267"; repStart "-3799"; ### HERVIP10F_7q11.22 ### chr7 rmsk gene 70846133 70850127 . + . gene_id "HERVIP10F_7q11.22"; transcript_id "HERVIP10F_7q11.22"; locus "HERVIP10F_7q11.22"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0052"; model_cov "5606"; model_pct "72.5"; chr7 rmsk exon 70846133 70846589 2066 + . gene_id "HERVIP10F_7q11.22"; transcript_id "HERVIP10F_7q11.22"; locus "HERVIP10F_7q11.22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0052"; repClass "LTR"; repEnd "6786"; repFamily "ERV1"; repLeft "-951"; repStart "6309"; chr7 rmsk exon 70846977 70849655 6469 + . gene_id "HERVIP10F_7q11.22"; transcript_id "HERVIP10F_7q11.22"; locus "HERVIP10F_7q11.22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0052"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "2608"; chr7 rmsk exon 70849656 70850127 2813 + . gene_id "HERVIP10F_7q11.22"; transcript_id "HERVIP10F_7q11.22"; locus "HERVIP10F_7q11.22"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10F-int_0052"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7q11.22g ### chr7 rmsk gene 72093392 72094808 . + . gene_id "ERVLE_7q11.22g"; transcript_id "ERVLE_7q11.22g"; locus "ERVLE_7q11.22g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1850"; model_cov "1159"; model_pct "20.5"; chr7 rmsk exon 72093392 72093933 687 + . gene_id "ERVLE_7q11.22g"; transcript_id "ERVLE_7q11.22g"; locus "ERVLE_7q11.22g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1850"; repClass "LTR"; repEnd "597"; repFamily "ERVL"; repLeft "-5070"; repStart "23"; chr7 rmsk exon 72094000 72094289 694 + . gene_id "ERVLE_7q11.22g"; transcript_id "ERVLE_7q11.22g"; locus "ERVLE_7q11.22g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1850"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-4629"; repStart "719"; chr7 rmsk exon 72094554 72094808 694 + . gene_id "ERVLE_7q11.22g"; transcript_id "ERVLE_7q11.22g"; locus "ERVLE_7q11.22g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1850"; repClass "LTR"; repEnd "1281"; repFamily "ERVL"; repLeft "-4386"; repStart "1015"; ### MER101_7q11.23 ### chr7 rmsk gene 72761634 72766317 . + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; category "internal"; intModel "MER101-int"; locid "MER101-int_0211"; model_cov "4698"; model_pct "70.8"; chr7 rmsk exon 72761634 72762277 2159 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "2792"; repFamily "ERV1"; repLeft "-3847"; repStart "1741"; chr7 rmsk exon 72762362 72762655 4658 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "3043"; repFamily "ERV1"; repLeft "-3596"; repStart "2760"; chr7 rmsk exon 72762960 72763269 4658 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "3331"; repFamily "ERV1"; repLeft "-3308"; repStart "3044"; chr7 rmsk exon 72763582 72764291 4658 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "3790"; repFamily "ERV1"; repLeft "-2849"; repStart "2614"; chr7 rmsk exon 72764581 72765475 3311 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "4613"; repFamily "ERV1"; repLeft "-2026"; repStart "3300"; chr7 rmsk exon 72765766 72766061 1602 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "5897"; repFamily "ERV1"; repLeft "-742"; repStart "5582"; chr7 rmsk exon 72766065 72766317 926 + . gene_id "MER101_7q11.23"; transcript_id "MER101_7q11.23"; locus "MER101_7q11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0211"; repClass "LTR"; repEnd "6278"; repFamily "ERV1"; repLeft "-361"; repStart "6005"; ### MER41_7q11.23 ### chr7 rmsk gene 73787406 73791637 . + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0275"; model_cov "3310"; model_pct "55.7"; chr7 rmsk exon 73787406 73787669 10612 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0275"; repClass "LTR"; repEnd "3789"; repFamily "ERV1"; repLeft "-2157"; repStart "3560"; chr7 rmsk exon 73787980 73788359 10612 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0275"; repClass "LTR"; repEnd "4132"; repFamily "ERV1"; repLeft "-1814"; repStart "3790"; chr7 rmsk exon 73788679 73789565 12472 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0275"; repClass "LTR"; repEnd "4911"; repFamily "ERV1"; repLeft "-1035"; repStart "3202"; chr7 rmsk exon 73789879 73790668 12472 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0275"; repClass "LTR"; repEnd "5706"; repFamily "ERV1"; repLeft "-240"; repStart "4912"; chr7 rmsk exon 73790963 73791203 12472 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0275"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "5707"; chr7 rmsk exon 73791205 73791637 4137 + . gene_id "MER41_7q11.23"; transcript_id "MER41_7q11.23"; locus "MER41_7q11.23"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0275"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-113"; repStart "1"; ### MER34B_7q11.23a ### chr7 rmsk gene 73799725 73802181 . + . gene_id "MER34B_7q11.23a"; transcript_id "MER34B_7q11.23a"; locus "MER34B_7q11.23a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0137"; model_cov "1720"; model_pct "32.1"; chr7 rmsk exon 73799725 73799850 945 + . gene_id "MER34B_7q11.23a"; transcript_id "MER34B_7q11.23a"; locus "MER34B_7q11.23a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0137"; repClass "LTR"; repEnd "585"; repFamily "ERV1"; repLeft "-4771"; repStart "444"; chr7 rmsk exon 73800452 73800818 945 + . gene_id "MER34B_7q11.23a"; transcript_id "MER34B_7q11.23a"; locus "MER34B_7q11.23a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0137"; repClass "LTR"; repEnd "1173"; repFamily "ERV1"; repLeft "-4183"; repStart "589"; chr7 rmsk exon 73801181 73802181 1554 + . gene_id "MER34B_7q11.23a"; transcript_id "MER34B_7q11.23a"; locus "MER34B_7q11.23a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0137"; repClass "LTR"; repEnd "2231"; repFamily "ERV1"; repLeft "-3125"; repStart "1236"; ### HERVH_7q11.23b ### chr7 rmsk gene 75778912 75788562 . + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_0644"; model_cov "5569"; model_pct "72.2"; chr7 rmsk exon 75778912 75779306 2226 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "-13"; chr7 rmsk exon 75779310 75779777 2850 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 75780003 75781535 7918 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "1978"; repFamily "ERV1"; repLeft "-5735"; repStart "458"; chr7 rmsk exon 75781536 75781936 2588 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 75781937 75782402 2679 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 75782463 75783518 3914 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "1679"; repFamily "ERV1"; repLeft "-6034"; repStart "657"; chr7 rmsk exon 75783812 75787363 22365 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "4989"; repFamily "ERV1"; repLeft "-2724"; repStart "1367"; chr7 rmsk exon 75787675 75787713 22365 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "-2699"; repStart "4990"; chr7 rmsk exon 75787713 75788163 2707 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7270"; chr7 rmsk exon 75788164 75788562 2660 + . gene_id "HERVH_7q11.23b"; transcript_id "HERVH_7q11.23b"; locus "HERVH_7q11.23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0644"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER34B_7q11.23b ### chr7 rmsk gene 76448833 76451767 . - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0138"; model_cov "908"; model_pct "17.0"; chr7 rmsk exon 76448833 76448935 1293 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "3759"; repFamily "ERV1"; repLeft "3650"; repStart "-1597"; chr7 rmsk exon 76449253 76449651 1293 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "3649"; repFamily "ERV1"; repLeft "3286"; repStart "-1707"; chr7 rmsk exon 76449961 76449992 1293 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "3285"; repFamily "ERV1"; repLeft "3262"; repStart "-2071"; chr7 rmsk exon 76450424 76450546 1293 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "3261"; repFamily "ERV1"; repLeft "3117"; repStart "-2095"; chr7 rmsk exon 76450848 76450975 1293 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "3116"; repFamily "ERV1"; repLeft "2966"; repStart "-2240"; chr7 rmsk exon 76451584 76451767 672 - . gene_id "MER34B_7q11.23b"; transcript_id "MER34B_7q11.23b"; locus "MER34B_7q11.23b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0138"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "1301"; repStart "-3936"; ### MER34B_7q11.23c ### chr7 rmsk gene 76452293 76453035 . - . gene_id "MER34B_7q11.23c"; transcript_id "MER34B_7q11.23c"; locus "MER34B_7q11.23c"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0139"; model_cov "764"; model_pct "14.3"; chr7 rmsk exon 76452293 76452334 273 - . gene_id "MER34B_7q11.23c"; transcript_id "MER34B_7q11.23c"; locus "MER34B_7q11.23c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0139"; repClass "LTR"; repEnd "2775"; repFamily "ERV1"; repLeft "2740"; repStart "-2581"; chr7 rmsk exon 76452632 76453035 683 - . gene_id "MER34B_7q11.23c"; transcript_id "MER34B_7q11.23c"; locus "MER34B_7q11.23c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0139"; repClass "LTR"; repEnd "2683"; repFamily "ERV1"; repLeft "1954"; repStart "-2673"; ### MER34B_7q11.23d ### chr7 rmsk gene 76602528 76604185 . + . gene_id "MER34B_7q11.23d"; transcript_id "MER34B_7q11.23d"; locus "MER34B_7q11.23d"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0140"; model_cov "593"; model_pct "11.1"; chr7 rmsk exon 76602528 76602913 1396 + . gene_id "MER34B_7q11.23d"; transcript_id "MER34B_7q11.23d"; locus "MER34B_7q11.23d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0140"; repClass "LTR"; repEnd "3649"; repFamily "ERV1"; repLeft "-1707"; repStart "3341"; chr7 rmsk exon 76603232 76603339 1396 + . gene_id "MER34B_7q11.23d"; transcript_id "MER34B_7q11.23d"; locus "MER34B_7q11.23d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0140"; repClass "LTR"; repEnd "3752"; repFamily "ERV1"; repLeft "-1604"; repStart "3650"; chr7 rmsk exon 76603992 76604185 1396 + . gene_id "MER34B_7q11.23d"; transcript_id "MER34B_7q11.23d"; locus "MER34B_7q11.23d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0140"; repClass "LTR"; repEnd "3936"; repFamily "ERV1"; repLeft "-1420"; repStart "3753"; ### LTR23_7q11.23a ### chr7 rmsk gene 76623872 76624265 . + . gene_id "LTR23_7q11.23a"; transcript_id "LTR23_7q11.23a"; locus "LTR23_7q11.23a"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0039"; model_cov "729"; model_pct "14.2"; chr7 rmsk exon 76623872 76624265 766 + . gene_id "LTR23_7q11.23a"; transcript_id "LTR23_7q11.23a"; locus "LTR23_7q11.23a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0039"; repClass "LTR"; repEnd "2450"; repFamily "ERV1"; repLeft "-2673"; repStart "1721"; ### ERVLE_7q11.23 ### chr7 rmsk gene 76876829 76877548 . - . gene_id "ERVLE_7q11.23"; transcript_id "ERVLE_7q11.23"; locus "ERVLE_7q11.23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1855"; model_cov "788"; model_pct "13.9"; chr7 rmsk exon 76876829 76877548 882 - . gene_id "ERVLE_7q11.23"; transcript_id "ERVLE_7q11.23"; locus "ERVLE_7q11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1855"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "4470"; repStart "-409"; ### MER34B_7q11.23e ### chr7 rmsk gene 76946910 76949060 . - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0141"; model_cov "788"; model_pct "14.7"; chr7 rmsk exon 76946910 76947012 1222 - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0141"; repClass "LTR"; repEnd "3759"; repFamily "ERV1"; repLeft "3650"; repStart "-1597"; chr7 rmsk exon 76947324 76947721 1222 - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0141"; repClass "LTR"; repEnd "3649"; repFamily "ERV1"; repLeft "3250"; repStart "-1707"; chr7 rmsk exon 76948032 76948063 1222 - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0141"; repClass "LTR"; repEnd "3249"; repFamily "ERV1"; repLeft "3236"; repStart "-2107"; chr7 rmsk exon 76948505 76948627 1222 - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0141"; repClass "LTR"; repEnd "3235"; repFamily "ERV1"; repLeft "3118"; repStart "-2121"; chr7 rmsk exon 76948928 76949060 1222 - . gene_id "MER34B_7q11.23e"; transcript_id "MER34B_7q11.23e"; locus "MER34B_7q11.23e"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0141"; repClass "LTR"; repEnd "3117"; repFamily "ERV1"; repLeft "2967"; repStart "-2239"; ### LTR23_7q11.23b ### chr7 rmsk gene 76950377 76951117 . - . gene_id "LTR23_7q11.23b"; transcript_id "LTR23_7q11.23b"; locus "LTR23_7q11.23b"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0041"; model_cov "765"; model_pct "14.9"; chr7 rmsk exon 76950377 76950418 260 - . gene_id "LTR23_7q11.23b"; transcript_id "LTR23_7q11.23b"; locus "LTR23_7q11.23b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0041"; repClass "LTR"; repEnd "2542"; repFamily "ERV1"; repLeft "2507"; repStart "-2581"; chr7 rmsk exon 76950714 76951117 714 - . gene_id "LTR23_7q11.23b"; transcript_id "LTR23_7q11.23b"; locus "LTR23_7q11.23b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0041"; repClass "LTR"; repEnd "2451"; repFamily "ERV1"; repLeft "1721"; repStart "-2672"; ### HERVH_7q11.23a ### chr7 rmsk gene 77339937 77345880 . + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0645"; model_cov "5012"; model_pct "65.0"; chr7 rmsk exon 77339937 77340369 2284 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 77340370 77340798 1050 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 77340857 77342939 12016 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "791"; chr7 rmsk exon 77342940 77343306 2104 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3357"; chr7 rmsk exon 77343317 77344490 7612 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3994"; chr7 rmsk exon 77344482 77344901 2366 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr7 rmsk exon 77344895 77345449 3223 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7157"; chr7 rmsk exon 77345451 77345880 2341 + . gene_id "HERVH_7q11.23a"; transcript_id "HERVH_7q11.23a"; locus "HERVH_7q11.23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0645"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_7q11.23 ### chr7 rmsk gene 77870269 77874796 . - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0695"; model_cov "3405"; model_pct "60.2"; chr7 rmsk exon 77870269 77870709 3316 - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0695"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 77870710 77872389 13248 - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0695"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3916"; repStart "0"; chr7 rmsk exon 77872388 77872936 12965 - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0695"; repClass "LTR"; repEnd "1669"; repFamily "ERVL"; repLeft "1132"; repStart "-3985"; chr7 rmsk exon 77873227 77874356 12965 - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0695"; repClass "LTR"; repEnd "1131"; repFamily "ERVL"; repLeft "1"; repStart "-4523"; chr7 rmsk exon 77874359 77874796 3468 - . gene_id "HERVL_7q11.23"; transcript_id "HERVL_7q11.23"; locus "HERVL_7q11.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0695"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### MER61_7q21.11 ### chr7 rmsk gene 78009135 78011685 . + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; category "internal"; intModel "MER61-int"; locid "MER61-int_0216"; model_cov "1948"; model_pct "37.3"; chr7 rmsk exon 78009135 78009223 530 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "399"; repFamily "ERV1"; repLeft "-4818"; repStart "326"; chr7 rmsk exon 78009216 78009245 1693 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "19"; repFamily "ERV1"; repLeft "-5198"; repStart "-9"; chr7 rmsk exon 78009553 78009783 1693 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "-4967"; repStart "20"; chr7 rmsk exon 78010086 78010162 1693 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "316"; repFamily "ERV1"; repLeft "-4901"; repStart "251"; chr7 rmsk exon 78010155 78011277 7044 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-1224"; repStart "2827"; chr7 rmsk exon 78011291 78011685 2533 + . gene_id "MER61_7q21.11"; transcript_id "MER61_7q21.11"; locus "MER61_7q21.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0216"; repClass "LTR"; repEnd "5209"; repFamily "ERV1"; repLeft "-8"; repStart "4823"; ### HERVL_7q21.11a ### chr7 rmsk gene 78608844 78610281 . - . gene_id "HERVL_7q21.11a"; transcript_id "HERVL_7q21.11a"; locus "HERVL_7q21.11a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0697"; model_cov "1098"; model_pct "19.4"; chr7 rmsk exon 78608844 78609262 2869 - . gene_id "HERVL_7q21.11a"; transcript_id "HERVL_7q21.11a"; locus "HERVL_7q21.11a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0697"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "21"; repStart "0"; chr7 rmsk exon 78609270 78610281 4715 - . gene_id "HERVL_7q21.11a"; transcript_id "HERVL_7q21.11a"; locus "HERVL_7q21.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0697"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4556"; repStart "0"; ### MER4B_7q21.11a ### chr7 rmsk gene 79156061 79158978 . + . gene_id "MER4B_7q21.11a"; transcript_id "MER4B_7q21.11a"; locus "MER4B_7q21.11a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0211"; model_cov "2730"; model_pct "40.4"; chr7 rmsk exon 79156061 79156832 5401 + . gene_id "MER4B_7q21.11a"; transcript_id "MER4B_7q21.11a"; locus "MER4B_7q21.11a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0211"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 79156833 79157934 6938 + . gene_id "MER4B_7q21.11a"; transcript_id "MER4B_7q21.11a"; locus "MER4B_7q21.11a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0211"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "1"; chr7 rmsk exon 79157998 79158978 7542 + . gene_id "MER4B_7q21.11a"; transcript_id "MER4B_7q21.11a"; locus "MER4B_7q21.11a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0211"; repClass "LTR"; repEnd "2671"; repFamily "ERV1"; repLeft "-4087"; repStart "1089"; ### MER4B_7q21.11b ### chr7 rmsk gene 79159023 79163015 . + . gene_id "MER4B_7q21.11b"; transcript_id "MER4B_7q21.11b"; locus "MER4B_7q21.11b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0212"; model_cov "4289"; model_pct "63.5"; chr7 rmsk exon 79159023 79159284 7542 + . gene_id "MER4B_7q21.11b"; transcript_id "MER4B_7q21.11b"; locus "MER4B_7q21.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0212"; repClass "LTR"; repEnd "2268"; repFamily "ERV1"; repLeft "-4490"; repStart "1993"; chr7 rmsk exon 79159548 79160966 7542 + . gene_id "MER4B_7q21.11b"; transcript_id "MER4B_7q21.11b"; locus "MER4B_7q21.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0212"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "2269"; chr7 rmsk exon 79160966 79163015 12105 + . gene_id "MER4B_7q21.11b"; transcript_id "MER4B_7q21.11b"; locus "MER4B_7q21.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0212"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "-111"; repStart "4452"; ### ERVLB4_7q21.11a ### chr7 rmsk gene 79476360 79479247 . + . gene_id "ERVLB4_7q21.11a"; transcript_id "ERVLB4_7q21.11a"; locus "ERVLB4_7q21.11a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0816"; model_cov "1839"; model_pct "32.2"; chr7 rmsk exon 79476360 79476424 258 + . gene_id "ERVLB4_7q21.11a"; transcript_id "ERVLB4_7q21.11a"; locus "ERVLB4_7q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0816"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "-5154"; repStart "496"; chr7 rmsk exon 79476742 79476994 332 + . gene_id "ERVLB4_7q21.11a"; transcript_id "ERVLB4_7q21.11a"; locus "ERVLB4_7q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0816"; repClass "LTR"; repEnd "684"; repFamily "ERVL"; repLeft "-5030"; repStart "416"; chr7 rmsk exon 79477718 79479017 2074 + . gene_id "ERVLB4_7q21.11a"; transcript_id "ERVLB4_7q21.11a"; locus "ERVLB4_7q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0816"; repClass "LTR"; repEnd "2903"; repFamily "ERVL"; repLeft "-2811"; repStart "1579"; chr7 rmsk exon 79479076 79479247 382 + . gene_id "ERVLB4_7q21.11a"; transcript_id "ERVLB4_7q21.11a"; locus "ERVLB4_7q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0816"; repClass "LTR"; repEnd "3132"; repFamily "ERVL"; repLeft "-2582"; repStart "2949"; ### ERVLB4_7q21.11b ### chr7 rmsk gene 79531098 79532635 . - . gene_id "ERVLB4_7q21.11b"; transcript_id "ERVLB4_7q21.11b"; locus "ERVLB4_7q21.11b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0817"; model_cov "1570"; model_pct "27.5"; chr7 rmsk exon 79531098 79532635 6943 - . gene_id "ERVLB4_7q21.11b"; transcript_id "ERVLB4_7q21.11b"; locus "ERVLB4_7q21.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0817"; repClass "LTR"; repEnd "5153"; repFamily "ERVL"; repLeft "3583"; repStart "-561"; ### ERV316A3_7q21.11a ### chr7 rmsk gene 79652420 79654628 . + . gene_id "ERV316A3_7q21.11a"; transcript_id "ERV316A3_7q21.11a"; locus "ERV316A3_7q21.11a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1390"; model_cov "1709"; model_pct "32.7"; chr7 rmsk exon 79652420 79654109 1837 + . gene_id "ERV316A3_7q21.11a"; transcript_id "ERV316A3_7q21.11a"; locus "ERV316A3_7q21.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1390"; repClass "LTR"; repEnd "5026"; repFamily "ERVL"; repLeft "-200"; repStart "3317"; chr7 rmsk exon 79654257 79654388 318 + . gene_id "ERV316A3_7q21.11a"; transcript_id "ERV316A3_7q21.11a"; locus "ERV316A3_7q21.11a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1390"; repClass "LTR"; repEnd "121"; repFamily "ERVL"; repLeft "-317"; repStart "-17"; chr7 rmsk exon 79654415 79654628 598 + . gene_id "ERV316A3_7q21.11a"; transcript_id "ERV316A3_7q21.11a"; locus "ERV316A3_7q21.11a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1390"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "227"; ### ERV316A3_7q21.11b ### chr7 rmsk gene 80244753 80250006 . - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1392"; model_cov "3879"; model_pct "74.2"; chr7 rmsk exon 80244753 80244927 331 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "273"; repStart "0"; chr7 rmsk exon 80245173 80245924 1354 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "4475"; repStart "-55"; chr7 rmsk exon 80246416 80246501 413 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "3623"; repFamily "ERVL"; repLeft "3536"; repStart "-1603"; chr7 rmsk exon 80247099 80247440 618 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "3532"; repFamily "ERVL"; repLeft "3193"; repStart "-1694"; chr7 rmsk exon 80247512 80249046 1986 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "3037"; repFamily "ERVL"; repLeft "568"; repStart "-2189"; chr7 rmsk exon 80249314 80249573 826 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "231"; repStart "-4707"; chr7 rmsk exon 80249588 80250006 945 - . gene_id "ERV316A3_7q21.11b"; transcript_id "ERV316A3_7q21.11b"; locus "ERV316A3_7q21.11b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1392"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "2"; repStart "-4"; ### ERV316A3_7q21.11c ### chr7 rmsk gene 80269139 80270341 . - . gene_id "ERV316A3_7q21.11c"; transcript_id "ERV316A3_7q21.11c"; locus "ERV316A3_7q21.11c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1393"; model_cov "966"; model_pct "18.5"; chr7 rmsk exon 80269139 80270084 1199 - . gene_id "ERV316A3_7q21.11c"; transcript_id "ERV316A3_7q21.11c"; locus "ERV316A3_7q21.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1393"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "3988"; repStart "-272"; chr7 rmsk exon 80270105 80270341 414 - . gene_id "ERV316A3_7q21.11c"; transcript_id "ERV316A3_7q21.11c"; locus "ERV316A3_7q21.11c"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1393"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "38"; repStart "-272"; ### ERVLB4_7q21.11c ### chr7 rmsk gene 80331030 80334423 . + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0818"; model_cov "3146"; model_pct "55.1"; chr7 rmsk exon 80331030 80333091 2491 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "2642"; repFamily "ERVL"; repLeft "-3072"; repStart "436"; chr7 rmsk exon 80333178 80333318 449 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "4127"; repFamily "ERVL"; repLeft "-1587"; repStart "3966"; chr7 rmsk exon 80333385 80333775 1029 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "4620"; repFamily "ERVL"; repLeft "-1094"; repStart "4207"; chr7 rmsk exon 80333881 80334046 550 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "4850"; repFamily "ERVL"; repLeft "-864"; repStart "4684"; chr7 rmsk exon 80334156 80334199 257 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-691"; repStart "4980"; chr7 rmsk exon 80334270 80334423 457 + . gene_id "ERVLB4_7q21.11c"; transcript_id "ERVLB4_7q21.11c"; locus "ERVLB4_7q21.11c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0818"; repClass "LTR"; repEnd "5319"; repFamily "ERVL"; repLeft "-395"; repStart "5162"; ### HERVL_7q21.11b ### chr7 rmsk gene 80351961 80352857 . - . gene_id "HERVL_7q21.11b"; transcript_id "HERVL_7q21.11b"; locus "HERVL_7q21.11b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0698"; model_cov "609"; model_pct "10.8"; chr7 rmsk exon 80351961 80352570 4526 - . gene_id "HERVL_7q21.11b"; transcript_id "HERVL_7q21.11b"; locus "HERVL_7q21.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0698"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "4674"; repStart "-371"; chr7 rmsk exon 80352571 80352857 2026 - . gene_id "HERVL_7q21.11b"; transcript_id "HERVL_7q21.11b"; locus "HERVL_7q21.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0698"; repClass "LTR"; repEnd "291"; repFamily "ERVL"; repLeft "1"; repStart "-153"; ### ERV316A3_7q21.11d ### chr7 rmsk gene 80519439 80526809 . - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1394"; model_cov "4037"; model_pct "77.2"; chr7 rmsk exon 80519439 80519776 769 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "88"; repStart "-3"; chr7 rmsk exon 80519912 80520041 415 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "5016"; repStart "-82"; chr7 rmsk exon 80520248 80520809 1028 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "4504"; repStart "-219"; chr7 rmsk exon 80520823 80520991 586 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "4209"; repStart "-848"; chr7 rmsk exon 80521038 80521442 1007 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "4083"; repFamily "ERVL"; repLeft "3616"; repStart "-1143"; chr7 rmsk exon 80521765 80522379 1007 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "3331"; repFamily "ERVL"; repLeft "2455"; repStart "-1895"; chr7 rmsk exon 80522703 80523436 1858 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "2885"; repFamily "ERVL"; repLeft "2128"; repStart "-2341"; chr7 rmsk exon 80523701 80523910 494 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "1555"; repFamily "ERVL"; repLeft "1355"; repStart "-3671"; chr7 rmsk exon 80525171 80525920 1324 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "491"; repStart "-3977"; chr7 rmsk exon 80526205 80526398 411 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "231"; repStart "-4816"; chr7 rmsk exon 80526409 80526809 877 - . gene_id "ERV316A3_7q21.11d"; transcript_id "ERV316A3_7q21.11d"; locus "ERV316A3_7q21.11d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1394"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_7q21.11d ### chr7 rmsk gene 80566619 80567650 . - . gene_id "ERVLB4_7q21.11d"; transcript_id "ERVLB4_7q21.11d"; locus "ERVLB4_7q21.11d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0819"; model_cov "985"; model_pct "17.2"; chr7 rmsk exon 80566619 80566869 925 - . gene_id "ERVLB4_7q21.11d"; transcript_id "ERVLB4_7q21.11d"; locus "ERVLB4_7q21.11d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0819"; repClass "LTR"; repEnd "2791"; repFamily "ERVL"; repLeft "2531"; repStart "-2923"; chr7 rmsk exon 80566938 80567650 925 - . gene_id "ERVLB4_7q21.11d"; transcript_id "ERVLB4_7q21.11d"; locus "ERVLB4_7q21.11d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0819"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "1805"; repStart "-3184"; ### ERV316A3_7q21.11e ### chr7 rmsk gene 81188548 81191353 . + . gene_id "ERV316A3_7q21.11e"; transcript_id "ERV316A3_7q21.11e"; locus "ERV316A3_7q21.11e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1395"; model_cov "2813"; model_pct "53.8"; chr7 rmsk exon 81188548 81191353 2834 + . gene_id "ERV316A3_7q21.11e"; transcript_id "ERV316A3_7q21.11e"; locus "ERV316A3_7q21.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1395"; repClass "LTR"; repEnd "4038"; repFamily "ERVL"; repLeft "-1188"; repStart "1225"; ### HERVL18_7q21.11a ### chr7 rmsk gene 81264073 81267799 . - . gene_id "HERVL18_7q21.11a"; transcript_id "HERVL18_7q21.11a"; locus "HERVL18_7q21.11a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0083"; model_cov "3091"; model_pct "51.1"; chr7 rmsk exon 81264073 81264410 2112 - . gene_id "HERVL18_7q21.11a"; transcript_id "HERVL18_7q21.11a"; locus "HERVL18_7q21.11a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0083"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr7 rmsk exon 81264412 81266767 14994 - . gene_id "HERVL18_7q21.11a"; transcript_id "HERVL18_7q21.11a"; locus "HERVL18_7q21.11a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0083"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "3712"; repStart "0"; chr7 rmsk exon 81266770 81267453 2432 - . gene_id "HERVL18_7q21.11a"; transcript_id "HERVL18_7q21.11a"; locus "HERVL18_7q21.11a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0083"; repClass "LTR"; repEnd "757"; repFamily "ERVL"; repLeft "1"; repStart "-5290"; chr7 rmsk exon 81267459 81267799 2276 - . gene_id "HERVL18_7q21.11a"; transcript_id "HERVL18_7q21.11a"; locus "HERVL18_7q21.11a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0083"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_7q21.11c ### chr7 rmsk gene 81276094 81280891 . + . gene_id "HERVL_7q21.11c"; transcript_id "HERVL_7q21.11c"; locus "HERVL_7q21.11c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0699"; model_cov "4288"; model_pct "75.8"; chr7 rmsk exon 81276094 81280307 26627 + . gene_id "HERVL_7q21.11c"; transcript_id "HERVL_7q21.11c"; locus "HERVL_7q21.11c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0699"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "1364"; chr7 rmsk exon 81280311 81280891 1799 + . gene_id "HERVL_7q21.11c"; transcript_id "HERVL_7q21.11c"; locus "HERVL_7q21.11c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0699"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL40_7q21.11 ### chr7 rmsk gene 81467958 81472638 . + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0207"; model_cov "2993"; model_pct "54.1"; chr7 rmsk exon 81467958 81468404 1255 + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0207"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-1"; repStart "12"; chr7 rmsk exon 81468691 81468875 334 + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0207"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "-4349"; repStart "990"; chr7 rmsk exon 81468913 81469008 474 + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0207"; repClass "LTR"; repEnd "1373"; repFamily "ERVL"; repLeft "-4157"; repStart "1278"; chr7 rmsk exon 81469825 81470122 533 + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0207"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-3827"; repStart "1377"; chr7 rmsk exon 81470333 81472638 6648 + . gene_id "HERVL40_7q21.11"; transcript_id "HERVL40_7q21.11"; locus "HERVL40_7q21.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0207"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "-327"; repStart "2822"; ### ERVLE_7q21.11a ### chr7 rmsk gene 81870412 81871054 . + . gene_id "ERVLE_7q21.11a"; transcript_id "ERVLE_7q21.11a"; locus "ERVLE_7q21.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1858"; model_cov "666"; model_pct "11.8"; chr7 rmsk exon 81870412 81871054 1605 + . gene_id "ERVLE_7q21.11a"; transcript_id "ERVLE_7q21.11a"; locus "ERVLE_7q21.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1858"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-3149"; repStart "1852"; ### ERVLE_7q21.11b ### chr7 rmsk gene 81931797 81932347 . - . gene_id "ERVLE_7q21.11b"; transcript_id "ERVLE_7q21.11b"; locus "ERVLE_7q21.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1860"; model_cov "636"; model_pct "11.2"; chr7 rmsk exon 81931797 81932347 575 - . gene_id "ERVLE_7q21.11b"; transcript_id "ERVLE_7q21.11b"; locus "ERVLE_7q21.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1860"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "3377"; repStart "-1654"; ### ERV316A3_7q21.11f ### chr7 rmsk gene 82056197 82058328 . + . gene_id "ERV316A3_7q21.11f"; transcript_id "ERV316A3_7q21.11f"; locus "ERV316A3_7q21.11f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1396"; model_cov "1016"; model_pct "19.4"; chr7 rmsk exon 82056197 82057048 1818 + . gene_id "ERV316A3_7q21.11f"; transcript_id "ERV316A3_7q21.11f"; locus "ERV316A3_7q21.11f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1396"; repClass "LTR"; repEnd "4441"; repFamily "ERVL"; repLeft "-785"; repStart "3580"; chr7 rmsk exon 82057281 82057434 414 + . gene_id "ERV316A3_7q21.11f"; transcript_id "ERV316A3_7q21.11f"; locus "ERV316A3_7q21.11f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1396"; repClass "LTR"; repEnd "4628"; repFamily "ERVL"; repLeft "-598"; repStart "4473"; chr7 rmsk exon 82057990 82058328 583 + . gene_id "ERV316A3_7q21.11f"; transcript_id "ERV316A3_7q21.11f"; locus "ERV316A3_7q21.11f"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1396"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "64"; ### HERVL18_7q21.11b ### chr7 rmsk gene 82201985 82205211 . + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0084"; model_cov "2250"; model_pct "37.2"; chr7 rmsk exon 82201985 82202354 2162 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 82202361 82202785 1826 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "-5549"; repStart "1"; chr7 rmsk exon 82202780 82203245 2194 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "1149"; chr7 rmsk exon 82203278 82203533 1187 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr7 rmsk exon 82203531 82204391 5393 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2718"; chr7 rmsk exon 82204394 82204487 670 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr7 rmsk exon 82204827 82205211 2188 + . gene_id "HERVL18_7q21.11b"; transcript_id "HERVL18_7q21.11b"; locus "HERVL18_7q21.11b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0084"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV9_7q21.11 ### chr7 rmsk gene 82636877 82646011 . + . gene_id "HERV9_7q21.11"; transcript_id "HERV9_7q21.11"; locus "HERV9_7q21.11"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0094"; model_cov "8433"; model_pct "100.0"; chr7 rmsk exon 82636877 82637573 4950 + . gene_id "HERV9_7q21.11"; transcript_id "HERV9_7q21.11"; locus "HERV9_7q21.11"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0094"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 82637574 82642213 35649 + . gene_id "HERV9_7q21.11"; transcript_id "HERV9_7q21.11"; locus "HERV9_7q21.11"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0094"; repClass "LTR"; repEnd "5621"; repFamily "ERV1"; repLeft "-2815"; repStart "1"; chr7 rmsk exon 82642520 82645329 35649 + . gene_id "HERV9_7q21.11"; transcript_id "HERV9_7q21.11"; locus "HERV9_7q21.11"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0094"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "-1"; repStart "5622"; chr7 rmsk exon 82645332 82646011 5073 + . gene_id "HERV9_7q21.11"; transcript_id "HERV9_7q21.11"; locus "HERV9_7q21.11"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0094"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVL_7q21.11 ### chr7 rmsk gene 82733620 82739704 . + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0215"; model_cov "5092"; model_pct "88.4"; chr7 rmsk exon 82733620 82734062 26695 + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0215"; repClass "LTR"; repEnd "1097"; repFamily "ERVL"; repLeft "-4660"; repStart "655"; chr7 rmsk exon 82734210 82738364 26695 + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0215"; repClass "LTR"; repEnd "5437"; repFamily "ERVL"; repLeft "-320"; repStart "1100"; chr7 rmsk exon 82738497 82738573 26695 + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0215"; repClass "LTR"; repEnd "5515"; repFamily "ERVL"; repLeft "-242"; repStart "5443"; chr7 rmsk exon 82738882 82739115 26695 + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0215"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5516"; chr7 rmsk exon 82739116 82739704 2381 + . gene_id "ERVL_7q21.11"; transcript_id "ERVL_7q21.11"; locus "ERVL_7q21.11"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0215"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "-44"; ### ERV316A3_7q21.11g ### chr7 rmsk gene 82743879 82748076 . + . gene_id "ERV316A3_7q21.11g"; transcript_id "ERV316A3_7q21.11g"; locus "ERV316A3_7q21.11g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1398"; model_cov "3836"; model_pct "73.4"; chr7 rmsk exon 82743879 82744337 1164 + . gene_id "ERV316A3_7q21.11g"; transcript_id "ERV316A3_7q21.11g"; locus "ERV316A3_7q21.11g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1398"; repClass "LTR"; repEnd "562"; repFamily "ERVL"; repLeft "-4664"; repStart "94"; chr7 rmsk exon 82744748 82744930 8156 + . gene_id "ERV316A3_7q21.11g"; transcript_id "ERV316A3_7q21.11g"; locus "ERV316A3_7q21.11g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1398"; repClass "LTR"; repEnd "746"; repFamily "ERVL"; repLeft "-4480"; repStart "559"; chr7 rmsk exon 82744986 82748076 8156 + . gene_id "ERV316A3_7q21.11g"; transcript_id "ERV316A3_7q21.11g"; locus "ERV316A3_7q21.11g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1398"; repClass "LTR"; repEnd "3928"; repFamily "ERVL"; repLeft "-1298"; repStart "747"; ### ERVLE_7q21.11c ### chr7 rmsk gene 83324510 83326010 . - . gene_id "ERVLE_7q21.11c"; transcript_id "ERVLE_7q21.11c"; locus "ERVLE_7q21.11c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1861"; model_cov "1256"; model_pct "22.2"; chr7 rmsk exon 83324510 83325138 1434 - . gene_id "ERVLE_7q21.11c"; transcript_id "ERVLE_7q21.11c"; locus "ERVLE_7q21.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1861"; repClass "LTR"; repEnd "4688"; repFamily "ERVL"; repLeft "4048"; repStart "-979"; chr7 rmsk exon 83325172 83325607 591 - . gene_id "ERVLE_7q21.11c"; transcript_id "ERVLE_7q21.11c"; locus "ERVLE_7q21.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1861"; repClass "LTR"; repEnd "1355"; repFamily "ERVL"; repLeft "906"; repStart "-4312"; chr7 rmsk exon 83325842 83326010 281 - . gene_id "ERVLE_7q21.11c"; transcript_id "ERVLE_7q21.11c"; locus "ERVLE_7q21.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1861"; repClass "LTR"; repEnd "681"; repFamily "ERVL"; repLeft "514"; repStart "-4986"; ### HERVH_7q21.11 ### chr7 rmsk gene 83459668 83465383 . + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0646"; model_cov "5061"; model_pct "65.6"; chr7 rmsk exon 83459668 83460118 3502 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 83460121 83463207 19690 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr7 rmsk exon 83463198 83463702 3417 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr7 rmsk exon 83463705 83464361 4258 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 83464363 83464563 1138 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 83464562 83464936 2620 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 83464937 83465383 3335 + . gene_id "HERVH_7q21.11"; transcript_id "HERVH_7q21.11"; locus "HERVH_7q21.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0646"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_7q21.11h ### chr7 rmsk gene 83872564 83875793 . + . gene_id "ERV316A3_7q21.11h"; transcript_id "ERV316A3_7q21.11h"; locus "ERV316A3_7q21.11h"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1399"; model_cov "1334"; model_pct "25.5"; chr7 rmsk exon 83872564 83872995 777 + . gene_id "ERV316A3_7q21.11h"; transcript_id "ERV316A3_7q21.11h"; locus "ERV316A3_7q21.11h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1399"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "1"; chr7 rmsk exon 83873517 83874389 1411 + . gene_id "ERV316A3_7q21.11h"; transcript_id "ERV316A3_7q21.11h"; locus "ERV316A3_7q21.11h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1399"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "-2878"; repStart "1346"; chr7 rmsk exon 83874884 83875220 733 + . gene_id "ERV316A3_7q21.11h"; transcript_id "ERV316A3_7q21.11h"; locus "ERV316A3_7q21.11h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1399"; repClass "LTR"; repEnd "4942"; repFamily "ERVL"; repLeft "-284"; repStart "4610"; chr7 rmsk exon 83875487 83875793 386 + . gene_id "ERV316A3_7q21.11h"; transcript_id "ERV316A3_7q21.11h"; locus "ERV316A3_7q21.11h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1399"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "42"; ### ERVLB4_7q21.11e ### chr7 rmsk gene 83927102 83928090 . + . gene_id "ERVLB4_7q21.11e"; transcript_id "ERVLB4_7q21.11e"; locus "ERVLB4_7q21.11e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0821"; model_cov "1036"; model_pct "18.1"; chr7 rmsk exon 83927102 83928090 3610 + . gene_id "ERVLB4_7q21.11e"; transcript_id "ERVLB4_7q21.11e"; locus "ERVLB4_7q21.11e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0821"; repClass "LTR"; repEnd "2318"; repFamily "ERVL"; repLeft "-3396"; repStart "1282"; ### HERVL74_7q21.11a ### chr7 rmsk gene 84584415 84588988 . - . gene_id "HERVL74_7q21.11a"; transcript_id "HERVL74_7q21.11a"; locus "HERVL74_7q21.11a"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0043"; model_cov "3903"; model_pct "68.7"; chr7 rmsk exon 84584415 84584860 2079 - . gene_id "HERVL74_7q21.11a"; transcript_id "HERVL74_7q21.11a"; locus "HERVL74_7q21.11a"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0043"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 84584861 84586249 4689 - . gene_id "HERVL74_7q21.11a"; transcript_id "HERVL74_7q21.11a"; locus "HERVL74_7q21.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0043"; repClass "LTR"; repEnd "5685"; repFamily "ERVL"; repLeft "4150"; repStart "0"; chr7 rmsk exon 84586737 84588573 9385 - . gene_id "HERVL74_7q21.11a"; transcript_id "HERVL74_7q21.11a"; locus "HERVL74_7q21.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0043"; repClass "LTR"; repEnd "4161"; repFamily "ERVL"; repLeft "2232"; repStart "-1524"; chr7 rmsk exon 84588569 84588988 2087 - . gene_id "HERVL74_7q21.11a"; transcript_id "HERVL74_7q21.11a"; locus "HERVL74_7q21.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0043"; repClass "LTR"; repEnd "2113"; repFamily "ERVL"; repLeft "1674"; repStart "-3572"; ### HERVL74_7q21.11b ### chr7 rmsk gene 84598260 84601013 . - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0044"; model_cov "1445"; model_pct "25.4"; chr7 rmsk exon 84598260 84598818 2286 - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0044"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "2995"; repStart "-2122"; chr7 rmsk exon 84598883 84598965 2286 - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0044"; repClass "LTR"; repEnd "2994"; repFamily "ERVL"; repLeft "2910"; repStart "-2691"; chr7 rmsk exon 84599235 84599529 927 - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0044"; repClass "LTR"; repEnd "2885"; repFamily "ERVL"; repLeft "2589"; repStart "-2800"; chr7 rmsk exon 84600121 84600171 2371 - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0044"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "950"; repStart "-4683"; chr7 rmsk exon 84600595 84601013 2371 - . gene_id "HERVL74_7q21.11b"; transcript_id "HERVL74_7q21.11b"; locus "HERVL74_7q21.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0044"; repClass "LTR"; repEnd "949"; repFamily "ERVL"; repLeft "504"; repStart "-4736"; ### HERVL74_7q21.11c ### chr7 rmsk gene 84859853 84866058 . - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0045"; model_cov "4067"; model_pct "71.5"; chr7 rmsk exon 84859853 84860243 1671 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "3"; repStart "-62"; chr7 rmsk exon 84860269 84860550 1095 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "5656"; repFamily "ERVL"; repLeft "5376"; repStart "-29"; chr7 rmsk exon 84860890 84861293 1413 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "5269"; repFamily "ERVL"; repLeft "4841"; repStart "-416"; chr7 rmsk exon 84861453 84861558 338 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "4688"; repFamily "ERVL"; repLeft "4584"; repStart "-997"; chr7 rmsk exon 84861610 84862281 3077 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "4424"; repFamily "ERVL"; repLeft "3740"; repStart "-1261"; chr7 rmsk exon 84863382 84864844 6598 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "3740"; repFamily "ERVL"; repLeft "2285"; repStart "-1945"; chr7 rmsk exon 84864837 84865469 2801 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "1733"; repFamily "ERVL"; repLeft "1065"; repStart "-3952"; chr7 rmsk exon 84865630 84866058 1381 - . gene_id "HERVL74_7q21.11c"; transcript_id "HERVL74_7q21.11c"; locus "HERVL74_7q21.11c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0045"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "554"; repStart "-4683"; ### ERVLE_7q21.11d ### chr7 rmsk gene 84929007 84930395 . - . gene_id "ERVLE_7q21.11d"; transcript_id "ERVLE_7q21.11d"; locus "ERVLE_7q21.11d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1862"; model_cov "1113"; model_pct "19.6"; chr7 rmsk exon 84929007 84929807 3068 - . gene_id "ERVLE_7q21.11d"; transcript_id "ERVLE_7q21.11d"; locus "ERVLE_7q21.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1862"; repClass "LTR"; repEnd "2127"; repFamily "ERVL"; repLeft "1305"; repStart "-3540"; chr7 rmsk exon 84930119 84930395 3068 - . gene_id "ERVLE_7q21.11d"; transcript_id "ERVLE_7q21.11d"; locus "ERVLE_7q21.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1862"; repClass "LTR"; repEnd "1304"; repFamily "ERVL"; repLeft "1013"; repStart "-4363"; ### PABLA_7q21.11 ### chr7 rmsk gene 84941866 84945330 . + . gene_id "PABLA_7q21.11"; transcript_id "PABLA_7q21.11"; locus "PABLA_7q21.11"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0074"; model_cov "4505"; model_pct "89.8"; chr7 rmsk exon 84941866 84942415 3332 + . gene_id "PABLA_7q21.11"; transcript_id "PABLA_7q21.11"; locus "PABLA_7q21.11"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0074"; repClass "LTR"; repEnd "-72"; repFamily "ERV1"; repLeft "-5087"; repStart "-643"; chr7 rmsk exon 84942399 84945043 5821 + . gene_id "PABLA_7q21.11"; transcript_id "PABLA_7q21.11"; locus "PABLA_7q21.11"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0074"; repClass "LTR"; repEnd "2404"; repFamily "ERV1"; repLeft "-2611"; repStart "-1251"; chr7 rmsk exon 84945047 84945330 1903 + . gene_id "PABLA_7q21.11"; transcript_id "PABLA_7q21.11"; locus "PABLA_7q21.11"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0074"; repClass "LTR"; repEnd "3064"; repFamily "ERV1"; repLeft "-1951"; repStart "2785"; ### MER34B_7q21.11 ### chr7 rmsk gene 84968658 84969364 . + . gene_id "MER34B_7q21.11"; transcript_id "MER34B_7q21.11"; locus "MER34B_7q21.11"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0143"; model_cov "638"; model_pct "11.9"; chr7 rmsk exon 84968658 84969364 1052 + . gene_id "MER34B_7q21.11"; transcript_id "MER34B_7q21.11"; locus "MER34B_7q21.11"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0143"; repClass "LTR"; repEnd "661"; repFamily "ERV1"; repLeft "-4695"; repStart "23"; ### ERVLE_7q21.11e ### chr7 rmsk gene 85370452 85372047 . - . gene_id "ERVLE_7q21.11e"; transcript_id "ERVLE_7q21.11e"; locus "ERVLE_7q21.11e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1863"; model_cov "1625"; model_pct "28.7"; chr7 rmsk exon 85370452 85371583 3653 - . gene_id "ERVLE_7q21.11e"; transcript_id "ERVLE_7q21.11e"; locus "ERVLE_7q21.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1863"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "4529"; repStart "0"; chr7 rmsk exon 85371595 85372047 956 - . gene_id "ERVLE_7q21.11e"; transcript_id "ERVLE_7q21.11e"; locus "ERVLE_7q21.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1863"; repClass "LTR"; repEnd "888"; repFamily "ERVL"; repLeft "401"; repStart "-4779"; ### HERVIP10F_7q21.11 ### chr7 rmsk gene 85737576 85746387 . - . gene_id "HERVIP10F_7q21.11"; transcript_id "HERVIP10F_7q21.11"; locus "HERVIP10F_7q21.11"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0053"; model_cov "7712"; model_pct "99.7"; chr7 rmsk exon 85737576 85738079 2608 - . gene_id "HERVIP10F_7q21.11"; transcript_id "HERVIP10F_7q21.11"; locus "HERVIP10F_7q21.11"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0053"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "3"; repStart "-10"; chr7 rmsk exon 85738097 85745888 39492 - . gene_id "HERVIP10F_7q21.11"; transcript_id "HERVIP10F_7q21.11"; locus "HERVIP10F_7q21.11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0053"; repClass "LTR"; repEnd "7718"; repFamily "ERV1"; repLeft "6"; repStart "-19"; chr7 rmsk exon 85745899 85746387 2685 - . gene_id "HERVIP10F_7q21.11"; transcript_id "HERVIP10F_7q21.11"; locus "HERVIP10F_7q21.11"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0053"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-20"; ### HML5_7q21.11 ### chr7 rmsk gene 85764547 85766213 . + . gene_id "HML5_7q21.11"; transcript_id "HML5_7q21.11"; locus "HML5_7q21.11"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0061"; model_cov "1044"; model_pct "15.3"; chr7 rmsk exon 85764547 85765597 6987 + . gene_id "HML5_7q21.11"; transcript_id "HML5_7q21.11"; locus "HML5_7q21.11"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0061"; repClass "LTR"; repEnd "6827"; repFamily "ERVK"; repLeft "-10"; repStart "5783"; chr7 rmsk exon 85765636 85766213 3541 + . gene_id "HML5_7q21.11"; transcript_id "HML5_7q21.11"; locus "HML5_7q21.11"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0061"; repClass "LTR"; repEnd "600"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_7q21.11i ### chr7 rmsk gene 85903379 85906751 . - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1401"; model_cov "1026"; model_pct "19.6"; chr7 rmsk exon 85903379 85903739 1116 - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1401"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "5"; repStart "-59"; chr7 rmsk exon 85904037 85904282 768 - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1401"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "4652"; repStart "-322"; chr7 rmsk exon 85904638 85904778 768 - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1401"; repClass "LTR"; repEnd "4651"; repFamily "ERVL"; repLeft "4487"; repStart "-575"; chr7 rmsk exon 85905444 85905521 282 - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1401"; repClass "LTR"; repEnd "4234"; repFamily "ERVL"; repLeft "4156"; repStart "-992"; chr7 rmsk exon 85906236 85906751 1079 - . gene_id "ERV316A3_7q21.11i"; transcript_id "ERV316A3_7q21.11i"; locus "ERV316A3_7q21.11i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1401"; repClass "LTR"; repEnd "3886"; repFamily "ERVL"; repLeft "3354"; repStart "-1340"; ### HERVL_7q21.11d ### chr7 rmsk gene 86087739 86094294 . + . gene_id "HERVL_7q21.11d"; transcript_id "HERVL_7q21.11d"; locus "HERVL_7q21.11d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0701"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 86087739 86088186 2974 + . gene_id "HERVL_7q21.11d"; transcript_id "HERVL_7q21.11d"; locus "HERVL_7q21.11d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0701"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr7 rmsk exon 86088190 86093848 42206 + . gene_id "HERVL_7q21.11d"; transcript_id "HERVL_7q21.11d"; locus "HERVL_7q21.11d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0701"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 86093849 86094294 2858 + . gene_id "HERVL_7q21.11d"; transcript_id "HERVL_7q21.11d"; locus "HERVL_7q21.11d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0701"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_7q21.11j ### chr7 rmsk gene 86385103 86386320 . + . gene_id "ERV316A3_7q21.11j"; transcript_id "ERV316A3_7q21.11j"; locus "ERV316A3_7q21.11j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1403"; model_cov "1009"; model_pct "19.3"; chr7 rmsk exon 86385103 86385192 295 + . gene_id "ERV316A3_7q21.11j"; transcript_id "ERV316A3_7q21.11j"; locus "ERV316A3_7q21.11j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1403"; repClass "LTR"; repEnd "3038"; repFamily "ERVL"; repLeft "-2188"; repStart "2951"; chr7 rmsk exon 86385429 86386320 1500 + . gene_id "ERV316A3_7q21.11j"; transcript_id "ERV316A3_7q21.11j"; locus "ERV316A3_7q21.11j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1403"; repClass "LTR"; repEnd "4826"; repFamily "ERVL"; repLeft "-400"; repStart "3904"; ### ERV316A3_7q21.11k ### chr7 rmsk gene 86411908 86416011 . + . gene_id "ERV316A3_7q21.11k"; transcript_id "ERV316A3_7q21.11k"; locus "ERV316A3_7q21.11k"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1404"; model_cov "2168"; model_pct "41.5"; chr7 rmsk exon 86411908 86412388 916 + . gene_id "ERV316A3_7q21.11k"; transcript_id "ERV316A3_7q21.11k"; locus "ERV316A3_7q21.11k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1404"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "-4758"; repStart "8"; chr7 rmsk exon 86412880 86413037 827 + . gene_id "ERV316A3_7q21.11k"; transcript_id "ERV316A3_7q21.11k"; locus "ERV316A3_7q21.11k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1404"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "-4607"; repStart "469"; chr7 rmsk exon 86414594 86415308 1747 + . gene_id "ERV316A3_7q21.11k"; transcript_id "ERV316A3_7q21.11k"; locus "ERV316A3_7q21.11k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1404"; repClass "LTR"; repEnd "1377"; repFamily "ERVL"; repLeft "-3849"; repStart "611"; chr7 rmsk exon 86415318 86416011 1539 + . gene_id "ERV316A3_7q21.11k"; transcript_id "ERV316A3_7q21.11k"; locus "ERV316A3_7q21.11k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1404"; repClass "LTR"; repEnd "2561"; repFamily "ERVL"; repLeft "-2665"; repStart "1769"; ### HERVL40_7q21.12a ### chr7 rmsk gene 86845190 86847283 . - . gene_id "HERVL40_7q21.12a"; transcript_id "HERVL40_7q21.12a"; locus "HERVL40_7q21.12a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0209"; model_cov "1364"; model_pct "24.7"; chr7 rmsk exon 86845190 86845245 880 - . gene_id "HERVL40_7q21.12a"; transcript_id "HERVL40_7q21.12a"; locus "HERVL40_7q21.12a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0209"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "228"; repStart "-180"; chr7 rmsk exon 86845498 86846868 5239 - . gene_id "HERVL40_7q21.12a"; transcript_id "HERVL40_7q21.12a"; locus "HERVL40_7q21.12a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0209"; repClass "LTR"; repEnd "1365"; repFamily "ERVL"; repLeft "1"; repStart "-4165"; chr7 rmsk exon 86846870 86847283 1600 - . gene_id "HERVL40_7q21.12a"; transcript_id "HERVL40_7q21.12a"; locus "HERVL40_7q21.12a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0209"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL40_7q21.12b ### chr7 rmsk gene 86884223 86888948 . + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0210"; model_cov "4392"; model_pct "79.4"; chr7 rmsk exon 86884223 86884386 281 + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0210"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "-5189"; repStart "192"; chr7 rmsk exon 86884617 86884683 273 + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0210"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-5120"; repStart "345"; chr7 rmsk exon 86884725 86885934 4221 + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0210"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-3916"; repStart "416"; chr7 rmsk exon 86885961 86888539 11254 + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0210"; repClass "LTR"; repEnd "4767"; repFamily "ERVL"; repLeft "-763"; repStart "2058"; chr7 rmsk exon 86888670 86888948 589 + . gene_id "HERVL40_7q21.12b"; transcript_id "HERVL40_7q21.12b"; locus "HERVL40_7q21.12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0210"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-325"; repStart "4934"; ### ERVLE_7q21.12a ### chr7 rmsk gene 87070520 87072263 . - . gene_id "ERVLE_7q21.12a"; transcript_id "ERVLE_7q21.12a"; locus "ERVLE_7q21.12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1865"; model_cov "1518"; model_pct "26.8"; chr7 rmsk exon 87070520 87070753 531 - . gene_id "ERVLE_7q21.12a"; transcript_id "ERVLE_7q21.12a"; locus "ERVLE_7q21.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1865"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "5086"; repStart "-330"; chr7 rmsk exon 87071020 87071083 531 - . gene_id "ERVLE_7q21.12a"; transcript_id "ERVLE_7q21.12a"; locus "ERVLE_7q21.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1865"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "5022"; repStart "-582"; chr7 rmsk exon 87071121 87072263 2512 - . gene_id "ERVLE_7q21.12a"; transcript_id "ERVLE_7q21.12a"; locus "ERVLE_7q21.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1865"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "3711"; repStart "-752"; ### ERVLE_7q21.12b ### chr7 rmsk gene 87090172 87091617 . - . gene_id "ERVLE_7q21.12b"; transcript_id "ERVLE_7q21.12b"; locus "ERVLE_7q21.12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1866"; model_cov "1508"; model_pct "26.6"; chr7 rmsk exon 87090172 87091617 2073 - . gene_id "ERVLE_7q21.12b"; transcript_id "ERVLE_7q21.12b"; locus "ERVLE_7q21.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1866"; repClass "LTR"; repEnd "1514"; repFamily "ERVL"; repLeft "6"; repStart "-4153"; ### ERV316A3_7q21.12a ### chr7 rmsk gene 87125631 87127325 . + . gene_id "ERV316A3_7q21.12a"; transcript_id "ERV316A3_7q21.12a"; locus "ERV316A3_7q21.12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1405"; model_cov "1278"; model_pct "24.5"; chr7 rmsk exon 87125631 87126059 1034 + . gene_id "ERV316A3_7q21.12a"; transcript_id "ERV316A3_7q21.12a"; locus "ERV316A3_7q21.12a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1405"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chr7 rmsk exon 87126092 87127325 4120 + . gene_id "ERV316A3_7q21.12a"; transcript_id "ERV316A3_7q21.12a"; locus "ERV316A3_7q21.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1405"; repClass "LTR"; repEnd "5010"; repFamily "ERVL"; repLeft "-216"; repStart "3732"; ### HERVL_7q21.12a ### chr7 rmsk gene 87278267 87284832 . + . gene_id "HERVL_7q21.12a"; transcript_id "HERVL_7q21.12a"; locus "HERVL_7q21.12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0702"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 87278267 87278706 3501 + . gene_id "HERVL_7q21.12a"; transcript_id "HERVL_7q21.12a"; locus "HERVL_7q21.12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0702"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 87278707 87284372 44327 + . gene_id "HERVL_7q21.12a"; transcript_id "HERVL_7q21.12a"; locus "HERVL_7q21.12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0702"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 87284373 87284743 3040 + . gene_id "HERVL_7q21.12a"; transcript_id "HERVL_7q21.12a"; locus "HERVL_7q21.12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0702"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr7 rmsk exon 87284801 87284832 3040 + . gene_id "HERVL_7q21.12a"; transcript_id "HERVL_7q21.12a"; locus "HERVL_7q21.12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0702"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "385"; ### MER61_7q21.12 ### chr7 rmsk gene 87323384 87327754 . - . gene_id "MER61_7q21.12"; transcript_id "MER61_7q21.12"; locus "MER61_7q21.12"; category "internal"; intModel "MER61-int"; locid "MER61-int_0218"; model_cov "6577"; model_pct "100.0"; chr7 rmsk exon 87323384 87326725 12985 - . gene_id "MER61_7q21.12"; transcript_id "MER61_7q21.12"; locus "MER61_7q21.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0218"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1099"; repStart "-1"; chr7 rmsk exon 87327418 87327754 12985 - . gene_id "MER61_7q21.12"; transcript_id "MER61_7q21.12"; locus "MER61_7q21.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0218"; repClass "LTR"; repEnd "871"; repFamily "ERV1"; repLeft "609"; repStart "-4346"; ### LTR25_7q21.12 ### chr7 rmsk gene 87327757 87330748 . - . gene_id "LTR25_7q21.12"; transcript_id "LTR25_7q21.12"; locus "LTR25_7q21.12"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0064"; model_cov "2223"; model_pct "30.9"; chr7 rmsk exon 87327757 87328228 2664 - . gene_id "LTR25_7q21.12"; transcript_id "LTR25_7q21.12"; locus "LTR25_7q21.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0064"; repClass "LTR"; repEnd "2745"; repFamily "ERV1"; repLeft "2279"; repStart "-4443"; chr7 rmsk exon 87328262 87329677 9706 - . gene_id "LTR25_7q21.12"; transcript_id "LTR25_7q21.12"; locus "LTR25_7q21.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0064"; repClass "LTR"; repEnd "1761"; repFamily "ERV1"; repLeft "319"; repStart "-5427"; chr7 rmsk exon 87330455 87330748 9706 - . gene_id "LTR25_7q21.12"; transcript_id "LTR25_7q21.12"; locus "LTR25_7q21.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0064"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "3"; repStart "-6870"; ### PRIMA41_7q21.12 ### chr7 rmsk gene 87349244 87351840 . - . gene_id "PRIMA41_7q21.12"; transcript_id "PRIMA41_7q21.12"; locus "PRIMA41_7q21.12"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0070"; model_cov "1747"; model_pct "22.5"; chr7 rmsk exon 87349244 87349785 3495 - . gene_id "PRIMA41_7q21.12"; transcript_id "PRIMA41_7q21.12"; locus "PRIMA41_7q21.12"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0070"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 87349787 87351026 3471 - . gene_id "PRIMA41_7q21.12"; transcript_id "PRIMA41_7q21.12"; locus "PRIMA41_7q21.12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0070"; repClass "LTR"; repEnd "7752"; repFamily "ERV1"; repLeft "6516"; repStart "-4"; chr7 rmsk exon 87351338 87351840 3471 - . gene_id "PRIMA41_7q21.12"; transcript_id "PRIMA41_7q21.12"; locus "PRIMA41_7q21.12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0070"; repClass "LTR"; repEnd "6515"; repFamily "ERV1"; repLeft "6004"; repStart "-1241"; ### MER4_7q21.12 ### chr7 rmsk gene 87354026 87355522 . - . gene_id "MER4_7q21.12"; transcript_id "MER4_7q21.12"; locus "MER4_7q21.12"; category "internal"; intModel "MER4-int"; locid "MER4-int_0388"; model_cov "1051"; model_pct "15.9"; chr7 rmsk exon 87354026 87355103 2783 - . gene_id "MER4_7q21.12"; transcript_id "MER4_7q21.12"; locus "MER4_7q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0388"; repClass "LTR"; repEnd "4016"; repFamily "ERV1"; repLeft "3087"; repStart "-2582"; chr7 rmsk exon 87355400 87355522 2783 - . gene_id "MER4_7q21.12"; transcript_id "MER4_7q21.12"; locus "MER4_7q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0388"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "2964"; repStart "-3512"; ### ERV316A3_7q21.12b ### chr7 rmsk gene 87910895 87915022 . - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1406"; model_cov "3502"; model_pct "67.0"; chr7 rmsk exon 87910895 87910974 281 - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1406"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "356"; repStart "-9"; chr7 rmsk exon 87911016 87911180 608 - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1406"; repClass "LTR"; repEnd "194"; repFamily "ERVL"; repLeft "26"; repStart "-257"; chr7 rmsk exon 87911274 87911630 663 - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1406"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "4240"; repStart "-632"; chr7 rmsk exon 87911732 87914466 7203 - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1406"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "1182"; repStart "-1189"; chr7 rmsk exon 87914766 87915022 7203 - . gene_id "ERV316A3_7q21.12b"; transcript_id "ERV316A3_7q21.12b"; locus "ERV316A3_7q21.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1406"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "888"; repStart "-4045"; ### HUERSP1_7q21.12 ### chr7 rmsk gene 88285913 88288074 . - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0092"; model_cov "1605"; model_pct "25.6"; chr7 rmsk exon 88285913 88285962 324 - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0092"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "642"; repStart "0"; chr7 rmsk exon 88285964 88286562 3271 - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0092"; repClass "LTR"; repEnd "4132"; repFamily "ERV1"; repLeft "3219"; repStart "-2131"; chr7 rmsk exon 88286724 88286764 2128 - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0092"; repClass "LTR"; repEnd "694"; repFamily "ERV1"; repLeft "651"; repStart "-5569"; chr7 rmsk exon 88286809 88287381 2128 - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0092"; repClass "LTR"; repEnd "650"; repFamily "ERV1"; repLeft "1"; repStart "-5613"; chr7 rmsk exon 88287382 88288074 2977 - . gene_id "HUERSP1_7q21.12"; transcript_id "HUERSP1_7q21.12"; locus "HUERSP1_7q21.12"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0092"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_7q21.12b ### chr7 rmsk gene 88380615 88386108 . + . gene_id "HERVL_7q21.12b"; transcript_id "HERVL_7q21.12b"; locus "HERVL_7q21.12b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0703"; model_cov "4605"; model_pct "81.4"; chr7 rmsk exon 88380615 88384035 36486 + . gene_id "HERVL_7q21.12b"; transcript_id "HERVL_7q21.12b"; locus "HERVL_7q21.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0703"; repClass "LTR"; repEnd "4508"; repFamily "ERVL"; repLeft "-1146"; repStart "1048"; chr7 rmsk exon 88384344 88385494 36486 + . gene_id "HERVL_7q21.12b"; transcript_id "HERVL_7q21.12b"; locus "HERVL_7q21.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0703"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4509"; chr7 rmsk exon 88385495 88385816 2131 + . gene_id "HERVL_7q21.12b"; transcript_id "HERVL_7q21.12b"; locus "HERVL_7q21.12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0703"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-114"; repStart "1"; chr7 rmsk exon 88386067 88386108 310 + . gene_id "HERVL_7q21.12b"; transcript_id "HERVL_7q21.12b"; locus "HERVL_7q21.12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0703"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "404"; ### ERVLE_7q21.12c ### chr7 rmsk gene 88460495 88461397 . + . gene_id "ERVLE_7q21.12c"; transcript_id "ERVLE_7q21.12c"; locus "ERVLE_7q21.12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1868"; model_cov "928"; model_pct "16.4"; chr7 rmsk exon 88460495 88461397 1464 + . gene_id "ERVLE_7q21.12c"; transcript_id "ERVLE_7q21.12c"; locus "ERVLE_7q21.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1868"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "-404"; repStart "4335"; ### HUERSP3_7q21.13a ### chr7 rmsk gene 88539947 88542464 . - . gene_id "HUERSP3_7q21.13a"; transcript_id "HUERSP3_7q21.13a"; locus "HUERSP3_7q21.13a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0094"; model_cov "1570"; model_pct "17.6"; chr7 rmsk exon 88539947 88540559 4553 - . gene_id "HUERSP3_7q21.13a"; transcript_id "HUERSP3_7q21.13a"; locus "HUERSP3_7q21.13a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0094"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 88540922 88541238 2197 - . gene_id "HUERSP3_7q21.13a"; transcript_id "HUERSP3_7q21.13a"; locus "HUERSP3_7q21.13a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0094"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8596"; repStart "0"; chr7 rmsk exon 88541263 88542464 27445 - . gene_id "HUERSP3_7q21.13a"; transcript_id "HUERSP3_7q21.13a"; locus "HUERSP3_7q21.13a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0094"; repClass "LTR"; repEnd "6559"; repFamily "ERV1"; repLeft "5312"; repStart "-2360"; ### HUERSP3_7q21.13b ### chr7 rmsk gene 88542536 88548265 . - . gene_id "HUERSP3_7q21.13b"; transcript_id "HUERSP3_7q21.13b"; locus "HUERSP3_7q21.13b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0095"; model_cov "5307"; model_pct "59.5"; chr7 rmsk exon 88542536 88547643 27445 - . gene_id "HUERSP3_7q21.13b"; transcript_id "HUERSP3_7q21.13b"; locus "HUERSP3_7q21.13b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0095"; repClass "LTR"; repEnd "6559"; repFamily "ERV1"; repLeft "1252"; repStart "-2360"; chr7 rmsk exon 88547646 88548265 4460 - . gene_id "HUERSP3_7q21.13b"; transcript_id "HUERSP3_7q21.13b"; locus "HUERSP3_7q21.13b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0095"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_7q21.13a ### chr7 rmsk gene 88656834 88657723 . + . gene_id "ERVL_7q21.13a"; transcript_id "ERVL_7q21.13a"; locus "ERVL_7q21.13a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0218"; model_cov "994"; model_pct "17.3"; chr7 rmsk exon 88656834 88657595 1282 + . gene_id "ERVL_7q21.13a"; transcript_id "ERVL_7q21.13a"; locus "ERVL_7q21.13a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0218"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "-2599"; repStart "2359"; chr7 rmsk exon 88657600 88657723 290 + . gene_id "ERVL_7q21.13a"; transcript_id "ERVL_7q21.13a"; locus "ERVL_7q21.13a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0218"; repClass "LTR"; repEnd "3312"; repFamily "ERVL"; repLeft "-2445"; repStart "3117"; ### LTR46_7q21.13 ### chr7 rmsk gene 89433216 89439173 . + . gene_id "LTR46_7q21.13"; transcript_id "LTR46_7q21.13"; locus "LTR46_7q21.13"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0007"; model_cov "3401"; model_pct "48.7"; chr7 rmsk exon 89433216 89433399 16433 + . gene_id "LTR46_7q21.13"; transcript_id "LTR46_7q21.13"; locus "LTR46_7q21.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0007"; repClass "LTR"; repEnd "3123"; repFamily "ERV1"; repLeft "-3862"; repStart "2941"; chr7 rmsk exon 89433993 89436896 16433 + . gene_id "LTR46_7q21.13"; transcript_id "LTR46_7q21.13"; locus "LTR46_7q21.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0007"; repClass "LTR"; repEnd "6032"; repFamily "ERV1"; repLeft "-953"; repStart "3124"; chr7 rmsk exon 89438776 89439075 1609 + . gene_id "LTR46_7q21.13"; transcript_id "LTR46_7q21.13"; locus "LTR46_7q21.13"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0007"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "0"; repStart "6674"; chr7 rmsk exon 89439076 89439173 505 + . gene_id "LTR46_7q21.13"; transcript_id "LTR46_7q21.13"; locus "LTR46_7q21.13"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0007"; repClass "LTR"; repEnd "101"; repFamily "ERV1"; repLeft "-359"; repStart "1"; ### HERVL18_7q21.13 ### chr7 rmsk gene 89437483 89438582 . + . gene_id "HERVL18_7q21.13"; transcript_id "HERVL18_7q21.13"; locus "HERVL18_7q21.13"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0085"; model_cov "755"; model_pct "12.5"; chr7 rmsk exon 89437483 89437812 1251 + . gene_id "HERVL18_7q21.13"; transcript_id "HERVL18_7q21.13"; locus "HERVL18_7q21.13"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0085"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 89437837 89438102 1755 + . gene_id "HERVL18_7q21.13"; transcript_id "HERVL18_7q21.13"; locus "HERVL18_7q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0085"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "-5687"; repStart "95"; chr7 rmsk exon 89438101 89438582 3171 + . gene_id "HERVL18_7q21.13"; transcript_id "HERVL18_7q21.13"; locus "HERVL18_7q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0085"; repClass "LTR"; repEnd "1564"; repFamily "ERVL"; repLeft "-4483"; repStart "1074"; ### ERVL_7q21.13b ### chr7 rmsk gene 89476125 89477721 . + . gene_id "ERVL_7q21.13b"; transcript_id "ERVL_7q21.13b"; locus "ERVL_7q21.13b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0219"; model_cov "1197"; model_pct "20.8"; chr7 rmsk exon 89476125 89476325 350 + . gene_id "ERVL_7q21.13b"; transcript_id "ERVL_7q21.13b"; locus "ERVL_7q21.13b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0219"; repClass "LTR"; repEnd "1562"; repFamily "ERVL"; repLeft "-4195"; repStart "1358"; chr7 rmsk exon 89476365 89476715 502 + . gene_id "ERVL_7q21.13b"; transcript_id "ERVL_7q21.13b"; locus "ERVL_7q21.13b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0219"; repClass "LTR"; repEnd "1995"; repFamily "ERVL"; repLeft "-3762"; repStart "1635"; chr7 rmsk exon 89476816 89477137 1148 + . gene_id "ERVL_7q21.13b"; transcript_id "ERVL_7q21.13b"; locus "ERVL_7q21.13b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0219"; repClass "LTR"; repEnd "2365"; repFamily "ERVL"; repLeft "-3392"; repStart "2052"; chr7 rmsk exon 89477417 89477721 1148 + . gene_id "ERVL_7q21.13b"; transcript_id "ERVL_7q21.13b"; locus "ERVL_7q21.13b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0219"; repClass "LTR"; repEnd "2686"; repFamily "ERVL"; repLeft "-3071"; repStart "2366"; ### HERVIP10FH_7q21.13 ### chr7 rmsk gene 89624155 89629987 . + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0082"; model_cov "5421"; model_pct "100.0"; chr7 rmsk exon 89624155 89624629 3343 + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0082"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr7 rmsk exon 89624630 89625792 5928 + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0082"; repClass "LTR"; repEnd "-1513"; repFamily "ERV1"; repLeft "-6615"; repStart "-2634"; chr7 rmsk exon 89625768 89626187 3449 + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0082"; repClass "LTR"; repEnd "-221"; repFamily "ERV1"; repLeft "-5323"; repStart "-643"; chr7 rmsk exon 89626166 89629934 28651 + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0082"; repClass "LTR"; repEnd "4546"; repFamily "ERV1"; repLeft "-556"; repStart "732"; chr7 rmsk exon 89629925 89629987 440 + . gene_id "HERVIP10FH_7q21.13"; transcript_id "HERVIP10FH_7q21.13"; locus "HERVIP10FH_7q21.13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0082"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "5038"; ### ERVLE_7q21.13a ### chr7 rmsk gene 89639059 89639757 . - . gene_id "ERVLE_7q21.13a"; transcript_id "ERVLE_7q21.13a"; locus "ERVLE_7q21.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1871"; model_cov "702"; model_pct "12.4"; chr7 rmsk exon 89639059 89639448 509 - . gene_id "ERVLE_7q21.13a"; transcript_id "ERVLE_7q21.13a"; locus "ERVLE_7q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1871"; repClass "LTR"; repEnd "4887"; repFamily "ERVL"; repLeft "4481"; repStart "-780"; chr7 rmsk exon 89639457 89639757 590 - . gene_id "ERVLE_7q21.13a"; transcript_id "ERVLE_7q21.13a"; locus "ERVLE_7q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1871"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "4106"; repStart "-1265"; ### ERVLB4_7q21.13a ### chr7 rmsk gene 89732877 89735280 . - . gene_id "ERVLB4_7q21.13a"; transcript_id "ERVLB4_7q21.13a"; locus "ERVLB4_7q21.13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0823"; model_cov "847"; model_pct "14.8"; chr7 rmsk exon 89732877 89733203 1097 - . gene_id "ERVLB4_7q21.13a"; transcript_id "ERVLB4_7q21.13a"; locus "ERVLB4_7q21.13a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0823"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "149"; repStart "-10"; chr7 rmsk exon 89733210 89733582 2156 - . gene_id "ERVLB4_7q21.13a"; transcript_id "ERVLB4_7q21.13a"; locus "ERVLB4_7q21.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0823"; repClass "LTR"; repEnd "4909"; repFamily "ERVL"; repLeft "4535"; repStart "-805"; chr7 rmsk exon 89734809 89735280 2912 - . gene_id "ERVLB4_7q21.13a"; transcript_id "ERVLB4_7q21.13a"; locus "ERVLB4_7q21.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0823"; repClass "LTR"; repEnd "4545"; repFamily "ERVL"; repLeft "4072"; repStart "-1169"; ### HUERSP3B_7q21.13 ### chr7 rmsk gene 89856022 89864008 . + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0072"; model_cov "5696"; model_pct "76.8"; chr7 rmsk exon 89856022 89856608 3660 + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0072"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 89856626 89859280 13329 + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0072"; repClass "LTR"; repEnd "2623"; repFamily "ERV1"; repLeft "-4795"; repStart "18"; chr7 rmsk exon 89859694 89860595 5636 + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0072"; repClass "LTR"; repEnd "3932"; repFamily "ERV1"; repLeft "-3486"; repStart "3073"; chr7 rmsk exon 89860660 89862880 16122 + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0072"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "-473"; repStart "4713"; chr7 rmsk exon 89863431 89864008 3547 + . gene_id "HUERSP3B_7q21.13"; transcript_id "HUERSP3B_7q21.13"; locus "HUERSP3B_7q21.13"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0072"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7q21.13b ### chr7 rmsk gene 89945805 89949866 . - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1872"; model_cov "3243"; model_pct "57.2"; chr7 rmsk exon 89945805 89946101 731 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "286"; repStart "-91"; chr7 rmsk exon 89946275 89946522 2848 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "5330"; repFamily "ERVL"; repLeft "5078"; repStart "-337"; chr7 rmsk exon 89946640 89947191 2848 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "4515"; repStart "-590"; chr7 rmsk exon 89947221 89948358 7672 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "2482"; repFamily "ERVL"; repLeft "1302"; repStart "-3185"; chr7 rmsk exon 89948386 89949365 7672 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "331"; repStart "-4366"; chr7 rmsk exon 89949568 89949866 1004 - . gene_id "ERVLE_7q21.13b"; transcript_id "ERVLE_7q21.13b"; locus "ERVLE_7q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1872"; repClass "LTR"; repEnd "300"; repFamily "ERVL"; repLeft "21"; repStart "-5367"; ### ERVLB4_7q21.13b ### chr7 rmsk gene 89959647 89961245 . - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0824"; model_cov "628"; model_pct "11.0"; chr7 rmsk exon 89959647 89960024 1785 - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0824"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "1"; repStart "-165"; chr7 rmsk exon 89960025 89960205 1055 - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0824"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5534"; repStart "0"; chr7 rmsk exon 89960497 89960601 565 - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0824"; repClass "LTR"; repEnd "5507"; repFamily "ERVL"; repLeft "5403"; repStart "-207"; chr7 rmsk exon 89960604 89960798 2097 - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0824"; repClass "LTR"; repEnd "5346"; repFamily "ERVL"; repLeft "5156"; repStart "-368"; chr7 rmsk exon 89961111 89961245 2097 - . gene_id "ERVLB4_7q21.13b"; transcript_id "ERVLB4_7q21.13b"; locus "ERVLB4_7q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0824"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "5007"; repStart "-553"; ### ERVLB4_7q21.13c ### chr7 rmsk gene 89961308 89964030 . - . gene_id "ERVLB4_7q21.13c"; transcript_id "ERVLB4_7q21.13c"; locus "ERVLB4_7q21.13c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0825"; model_cov "1591"; model_pct "27.8"; chr7 rmsk exon 89961308 89961496 2097 - . gene_id "ERVLB4_7q21.13c"; transcript_id "ERVLB4_7q21.13c"; locus "ERVLB4_7q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0825"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "4942"; repStart "-553"; chr7 rmsk exon 89962246 89963371 5543 - . gene_id "ERVLB4_7q21.13c"; transcript_id "ERVLB4_7q21.13c"; locus "ERVLB4_7q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0825"; repClass "LTR"; repEnd "4676"; repFamily "ERVL"; repLeft "3444"; repStart "-1038"; chr7 rmsk exon 89963370 89963509 820 - . gene_id "ERVLB4_7q21.13c"; transcript_id "ERVLB4_7q21.13c"; locus "ERVLB4_7q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0825"; repClass "LTR"; repEnd "141"; repFamily "ERVL"; repLeft "1"; repStart "-5573"; chr7 rmsk exon 89963516 89964030 2607 - . gene_id "ERVLB4_7q21.13c"; transcript_id "ERVLB4_7q21.13c"; locus "ERVLB4_7q21.13c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0825"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### HERV4_7q21.13a ### chr7 rmsk gene 90191594 90192484 . - . gene_id "HERV4_7q21.13a"; transcript_id "HERV4_7q21.13a"; locus "HERV4_7q21.13a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0064"; model_cov "856"; model_pct "13.1"; chr7 rmsk exon 90191594 90192484 4342 - . gene_id "HERV4_7q21.13a"; transcript_id "HERV4_7q21.13a"; locus "HERV4_7q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0064"; repClass "LTR"; repEnd "2865"; repFamily "ERV1"; repLeft "2009"; repStart "-3674"; ### HERV4_7q21.13b ### chr7 rmsk gene 90192907 90195776 . - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0065"; model_cov "1714"; model_pct "26.2"; chr7 rmsk exon 90192907 90194038 6520 - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0065"; repClass "LTR"; repEnd "5160"; repFamily "ERV1"; repLeft "4022"; repStart "-1379"; chr7 rmsk exon 90194319 90194618 1418 - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0065"; repClass "LTR"; repEnd "3957"; repFamily "ERV1"; repLeft "3654"; repStart "-2582"; chr7 rmsk exon 90194754 90194953 443 - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0065"; repClass "LTR"; repEnd "890"; repFamily "ERV1"; repLeft "690"; repStart "-5649"; chr7 rmsk exon 90195507 90195582 270 - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0065"; repClass "LTR"; repEnd "76"; repFamily "ERV1"; repLeft "3"; repStart "-6463"; chr7 rmsk exon 90195590 90195776 590 - . gene_id "HERV4_7q21.13b"; transcript_id "HERV4_7q21.13b"; locus "HERV4_7q21.13b"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0065"; repClass "LTR"; repEnd "656"; repFamily "ERV1"; repLeft "455"; repStart "-1"; ### PABLA_7q21.13 ### chr7 rmsk gene 90291595 90294907 . - . gene_id "PABLA_7q21.13"; transcript_id "PABLA_7q21.13"; locus "PABLA_7q21.13"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0076"; model_cov "2967"; model_pct "59.2"; chr7 rmsk exon 90291595 90291827 1695 - . gene_id "PABLA_7q21.13"; transcript_id "PABLA_7q21.13"; locus "PABLA_7q21.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0076"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4781"; repStart "-2"; chr7 rmsk exon 90291958 90294907 13785 - . gene_id "PABLA_7q21.13"; transcript_id "PABLA_7q21.13"; locus "PABLA_7q21.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0076"; repClass "LTR"; repEnd "2120"; repFamily "ERV1"; repLeft "-615"; repStart "-2895"; ### MER41_7q21.13 ### chr7 rmsk gene 90294883 90296158 . - . gene_id "MER41_7q21.13"; transcript_id "MER41_7q21.13"; locus "MER41_7q21.13"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0276"; model_cov "634"; model_pct "10.7"; chr7 rmsk exon 90294883 90295606 3774 - . gene_id "MER41_7q21.13"; transcript_id "MER41_7q21.13"; locus "MER41_7q21.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0276"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "1"; repStart "-5311"; chr7 rmsk exon 90295607 90296158 3887 - . gene_id "MER41_7q21.13"; transcript_id "MER41_7q21.13"; locus "MER41_7q21.13"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0276"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7q21.13 ### chr7 rmsk gene 90462841 90467565 . - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1408"; model_cov "1235"; model_pct "23.6"; chr7 rmsk exon 90462841 90462881 288 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "412"; repStart "-11"; chr7 rmsk exon 90462885 90463115 3063 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "1851"; repFamily "ERVL"; repLeft "1624"; repStart "-3375"; chr7 rmsk exon 90465492 90466384 3063 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "1623"; repFamily "ERVL"; repLeft "699"; repStart "-3603"; chr7 rmsk exon 90466678 90466761 322 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "445"; repStart "-4697"; chr7 rmsk exon 90466835 90466920 1234 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "395"; repStart "0"; chr7 rmsk exon 90467242 90467565 1234 - . gene_id "ERV316A3_7q21.13"; transcript_id "ERV316A3_7q21.13"; locus "ERV316A3_7q21.13"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1408"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "51"; repStart "-69"; ### ERVLB4_7q21.13d ### chr7 rmsk gene 91414182 91415378 . + . gene_id "ERVLB4_7q21.13d"; transcript_id "ERVLB4_7q21.13d"; locus "ERVLB4_7q21.13d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0826"; model_cov "1176"; model_pct "20.6"; chr7 rmsk exon 91414182 91415059 1770 + . gene_id "ERVLB4_7q21.13d"; transcript_id "ERVLB4_7q21.13d"; locus "ERVLB4_7q21.13d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0826"; repClass "LTR"; repEnd "2586"; repFamily "ERVL"; repLeft "-3128"; repStart "1716"; chr7 rmsk exon 91415076 91415378 573 + . gene_id "ERVLB4_7q21.13d"; transcript_id "ERVLB4_7q21.13d"; locus "ERVLB4_7q21.13d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0826"; repClass "LTR"; repEnd "5098"; repFamily "ERVL"; repLeft "-616"; repStart "4792"; ### HERV9_7q21.13 ### chr7 rmsk gene 91447505 91456909 . - . gene_id "HERV9_7q21.13"; transcript_id "HERV9_7q21.13"; locus "HERV9_7q21.13"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0095"; model_cov "8435"; model_pct "100.0"; chr7 rmsk exon 91447505 91455959 69284 - . gene_id "HERV9_7q21.13"; transcript_id "HERV9_7q21.13"; locus "HERV9_7q21.13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0095"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 91455960 91456046 4205 - . gene_id "HERV9_7q21.13"; transcript_id "HERV9_7q21.13"; locus "HERV9_7q21.13"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0095"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "747"; repStart "0"; chr7 rmsk exon 91456362 91456909 4205 - . gene_id "HERV9_7q21.13"; transcript_id "HERV9_7q21.13"; locus "HERV9_7q21.13"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0095"; repClass "LTR"; repEnd "746"; repFamily "ERV1"; repLeft "1"; repStart "-80"; ### HERVL40_7q21.2 ### chr7 rmsk gene 92403115 92404941 . + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0212"; model_cov "847"; model_pct "15.3"; chr7 rmsk exon 92403115 92403419 1230 + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0212"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "-2"; repStart "155"; chr7 rmsk exon 92403423 92403484 287 + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0212"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "-5462"; repStart "1"; chr7 rmsk exon 92403739 92403890 551 + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0212"; repClass "LTR"; repEnd "1147"; repFamily "ERVL"; repLeft "-4383"; repStart "993"; chr7 rmsk exon 92404263 92404557 756 + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0212"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-3827"; repStart "1401"; chr7 rmsk exon 92404622 92404941 1084 + . gene_id "HERVL40_7q21.2"; transcript_id "HERVL40_7q21.2"; locus "HERVL40_7q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0212"; repClass "LTR"; repEnd "2986"; repFamily "ERVL"; repLeft "-2544"; repStart "2662"; ### HERVW_7q21.2 ### chr7 rmsk gene 92467999 92478192 . - . gene_id "HERVW_7q21.2"; transcript_id "HERVW_7q21.2"; locus "HERVW_7q21.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0164"; model_cov "8624"; model_pct "100.0"; chr7 rmsk exon 92467999 92468706 5781 - . gene_id "HERVW_7q21.2"; transcript_id "HERVW_7q21.2"; locus "HERVW_7q21.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0164"; repClass "LTR"; repEnd "708"; repFamily "ERV1"; repLeft "1"; repStart "-72"; chr7 rmsk exon 92468707 92476596 59560 - . gene_id "HERVW_7q21.2"; transcript_id "HERVW_7q21.2"; locus "HERVW_7q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0164"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "711"; repStart "0"; chr7 rmsk exon 92476710 92477412 59560 - . gene_id "HERVW_7q21.2"; transcript_id "HERVW_7q21.2"; locus "HERVW_7q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0164"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "1"; repStart "-7916"; chr7 rmsk exon 92477413 92478192 6244 - . gene_id "HERVW_7q21.2"; transcript_id "HERVW_7q21.2"; locus "HERVW_7q21.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0164"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_7q21.2 ### chr7 rmsk gene 92479193 92485274 . - . gene_id "HERVH_7q21.2"; transcript_id "HERVH_7q21.2"; locus "HERVH_7q21.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0647"; model_cov "5807"; model_pct "75.3"; chr7 rmsk exon 92479193 92479587 1973 - . gene_id "HERVH_7q21.2"; transcript_id "HERVH_7q21.2"; locus "HERVH_7q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0647"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 92479588 92480028 2932 - . gene_id "HERVH_7q21.2"; transcript_id "HERVH_7q21.2"; locus "HERVH_7q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0647"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr7 rmsk exon 92480009 92484840 21114 - . gene_id "HERVH_7q21.2"; transcript_id "HERVH_7q21.2"; locus "HERVH_7q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0647"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "1060"; repStart "-1290"; chr7 rmsk exon 92484841 92485274 2421 - . gene_id "HERVH_7q21.2"; transcript_id "HERVH_7q21.2"; locus "HERVH_7q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0647"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7q21.2 ### chr7 rmsk gene 92485345 92486581 . + . gene_id "ERVLE_7q21.2"; transcript_id "ERVLE_7q21.2"; locus "ERVLE_7q21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1874"; model_cov "1181"; model_pct "20.8"; chr7 rmsk exon 92485345 92485486 319 + . gene_id "ERVLE_7q21.2"; transcript_id "ERVLE_7q21.2"; locus "ERVLE_7q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1874"; repClass "LTR"; repEnd "1712"; repFamily "ERVL"; repLeft "-3955"; repStart "1561"; chr7 rmsk exon 92485586 92485675 364 + . gene_id "ERVLE_7q21.2"; transcript_id "ERVLE_7q21.2"; locus "ERVLE_7q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1874"; repClass "LTR"; repEnd "1951"; repFamily "ERVL"; repLeft "-3716"; repStart "1861"; chr7 rmsk exon 92485679 92486469 1780 + . gene_id "ERVLE_7q21.2"; transcript_id "ERVLE_7q21.2"; locus "ERVLE_7q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1874"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-1126"; repStart "3711"; chr7 rmsk exon 92486478 92486581 262 + . gene_id "ERVLE_7q21.2"; transcript_id "ERVLE_7q21.2"; locus "ERVLE_7q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1874"; repClass "LTR"; repEnd "4788"; repFamily "ERVL"; repLeft "-879"; repStart "4678"; ### MER4_7q21.2 ### chr7 rmsk gene 93127516 93129355 . + . gene_id "MER4_7q21.2"; transcript_id "MER4_7q21.2"; locus "MER4_7q21.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0390"; model_cov "1269"; model_pct "19.2"; chr7 rmsk exon 93127516 93128015 3497 + . gene_id "MER4_7q21.2"; transcript_id "MER4_7q21.2"; locus "MER4_7q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0390"; repClass "LTR"; repEnd "5769"; repFamily "ERV1"; repLeft "-829"; repStart "5263"; chr7 rmsk exon 93128160 93128896 4277 + . gene_id "MER4_7q21.2"; transcript_id "MER4_7q21.2"; locus "MER4_7q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0390"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5833"; chr7 rmsk exon 93128903 93129355 3199 + . gene_id "MER4_7q21.2"; transcript_id "MER4_7q21.2"; locus "MER4_7q21.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0390"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_7q21.2 ### chr7 rmsk gene 93148971 93154061 . + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0072"; model_cov "4433"; model_pct "57.2"; chr7 rmsk exon 93148971 93149490 3988 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 93149491 93150382 6390 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "-6826"; repStart "3"; chr7 rmsk exon 93150375 93151994 11639 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "1363"; chr7 rmsk exon 93151996 93152472 3635 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "4877"; repFamily "ERV1"; repLeft "-2879"; repStart "4400"; chr7 rmsk exon 93152751 93153419 4628 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "5639"; repFamily "ERV1"; repLeft "-2117"; repStart "4955"; chr7 rmsk exon 93153409 93153807 2817 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "6475"; repFamily "ERV1"; repLeft "-1281"; repStart "6072"; chr7 rmsk exon 93153811 93154061 1792 + . gene_id "PRIMA41_7q21.2"; transcript_id "PRIMA41_7q21.2"; locus "PRIMA41_7q21.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0072"; repClass "LTR"; repEnd "7538"; repFamily "ERV1"; repLeft "-218"; repStart "7288"; ### HERVH_7q21.3a ### chr7 rmsk gene 93395064 93399625 . + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0648"; model_cov "4196"; model_pct "54.4"; chr7 rmsk exon 93395064 93397342 15418 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "724"; chr7 rmsk exon 93397329 93397476 926 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 93397467 93397976 3364 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3492"; chr7 rmsk exon 93397972 93398617 4165 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr7 rmsk exon 93398619 93398834 1336 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 93398833 93399212 2319 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 93399213 93399625 2710 + . gene_id "HERVH_7q21.3a"; transcript_id "HERVH_7q21.3a"; locus "HERVH_7q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0648"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_7q21.3b ### chr7 rmsk gene 93639935 93645552 . + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0649"; model_cov "4911"; model_pct "63.7"; chr7 rmsk exon 93639935 93640344 2716 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 93640347 93643259 15996 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr7 rmsk exon 93643254 93643401 877 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 93643392 93643891 3298 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr7 rmsk exon 93643894 93644555 4309 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 93644553 93644771 1351 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr7 rmsk exon 93644770 93645145 2342 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 93645146 93645552 2679 + . gene_id "HERVH_7q21.3b"; transcript_id "HERVH_7q21.3b"; locus "HERVH_7q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0649"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_7q21.3a ### chr7 rmsk gene 93760478 93763816 . - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1877"; model_cov "2417"; model_pct "42.7"; chr7 rmsk exon 93760478 93760726 657 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "3585"; repFamily "ERVL"; repLeft "3334"; repStart "-2082"; chr7 rmsk exon 93761031 93761311 657 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "3333"; repFamily "ERVL"; repLeft "3049"; repStart "-2334"; chr7 rmsk exon 93761560 93761866 501 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "2315"; repStart "-2952"; chr7 rmsk exon 93762172 93762195 455 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "2435"; repStart "-3208"; chr7 rmsk exon 93762279 93762707 451 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "1366"; repStart "-3678"; chr7 rmsk exon 93762788 93762982 924 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "1341"; repFamily "ERVL"; repLeft "1151"; repStart "-4326"; chr7 rmsk exon 93763203 93763816 924 - . gene_id "ERVLE_7q21.3a"; transcript_id "ERVLE_7q21.3a"; locus "ERVLE_7q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1877"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "505"; repStart "-4517"; ### HERVL74_7q21.3a ### chr7 rmsk gene 93812320 93813026 . + . gene_id "HERVL74_7q21.3a"; transcript_id "HERVL74_7q21.3a"; locus "HERVL74_7q21.3a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0046"; model_cov "691"; model_pct "12.2"; chr7 rmsk exon 93812320 93812614 1090 + . gene_id "HERVL74_7q21.3a"; transcript_id "HERVL74_7q21.3a"; locus "HERVL74_7q21.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0046"; repClass "LTR"; repEnd "1845"; repFamily "ERVL"; repLeft "-3840"; repStart "1546"; chr7 rmsk exon 93812616 93812844 1315 + . gene_id "HERVL74_7q21.3a"; transcript_id "HERVL74_7q21.3a"; locus "HERVL74_7q21.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0046"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "-3241"; repStart "2214"; chr7 rmsk exon 93812867 93813026 831 + . gene_id "HERVL74_7q21.3a"; transcript_id "HERVL74_7q21.3a"; locus "HERVL74_7q21.3a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0046"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "-3005"; repStart "2518"; ### ERV316A3_7q21.3a ### chr7 rmsk gene 94073652 94077152 . + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1411"; model_cov "1894"; model_pct "36.2"; chr7 rmsk exon 94073652 94073889 2404 + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1411"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-1842"; repStart "3185"; chr7 rmsk exon 94074185 94075022 2404 + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1411"; repClass "LTR"; repEnd "4217"; repFamily "ERVL"; repLeft "-1009"; repStart "3385"; chr7 rmsk exon 94075587 94075927 1424 + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1411"; repClass "LTR"; repEnd "4705"; repFamily "ERVL"; repLeft "-521"; repStart "4362"; chr7 rmsk exon 94076225 94076759 1424 + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1411"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4706"; chr7 rmsk exon 94076760 94077152 975 + . gene_id "ERV316A3_7q21.3a"; transcript_id "ERV316A3_7q21.3a"; locus "ERV316A3_7q21.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1411"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERV316A3_7q21.3b ### chr7 rmsk gene 94563686 94566141 . - . gene_id "ERV316A3_7q21.3b"; transcript_id "ERV316A3_7q21.3b"; locus "ERV316A3_7q21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1412"; model_cov "2104"; model_pct "40.3"; chr7 rmsk exon 94563686 94565250 4555 - . gene_id "ERV316A3_7q21.3b"; transcript_id "ERV316A3_7q21.3b"; locus "ERV316A3_7q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1412"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "1335"; repStart "-2330"; chr7 rmsk exon 94565253 94565788 1135 - . gene_id "ERV316A3_7q21.3b"; transcript_id "ERV316A3_7q21.3b"; locus "ERV316A3_7q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1412"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "7"; repStart "-4676"; chr7 rmsk exon 94565791 94566141 829 - . gene_id "ERV316A3_7q21.3b"; transcript_id "ERV316A3_7q21.3b"; locus "ERV316A3_7q21.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1412"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "59"; repStart "0"; ### ERVLB4_7q21.3a ### chr7 rmsk gene 94583560 94585015 . + . gene_id "ERVLB4_7q21.3a"; transcript_id "ERVLB4_7q21.3a"; locus "ERVLB4_7q21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0828"; model_cov "1033"; model_pct "18.1"; chr7 rmsk exon 94583560 94584259 507 + . gene_id "ERVLB4_7q21.3a"; transcript_id "ERVLB4_7q21.3a"; locus "ERVLB4_7q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0828"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "-3112"; repStart "1854"; chr7 rmsk exon 94584627 94584712 252 + . gene_id "ERVLB4_7q21.3a"; transcript_id "ERVLB4_7q21.3a"; locus "ERVLB4_7q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0828"; repClass "LTR"; repEnd "3154"; repFamily "ERVL"; repLeft "-2560"; repStart "3068"; chr7 rmsk exon 94584761 94584845 322 + . gene_id "ERVLB4_7q21.3a"; transcript_id "ERVLB4_7q21.3a"; locus "ERVLB4_7q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0828"; repClass "LTR"; repEnd "3305"; repFamily "ERVL"; repLeft "-2409"; repStart "3219"; chr7 rmsk exon 94584914 94585015 284 + . gene_id "ERVLB4_7q21.3a"; transcript_id "ERVLB4_7q21.3a"; locus "ERVLB4_7q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0828"; repClass "LTR"; repEnd "3464"; repFamily "ERVL"; repLeft "-2250"; repStart "3351"; ### HML3_7q21.3 ### chr7 rmsk gene 94722293 94729309 . - . gene_id "HML3_7q21.3"; transcript_id "HML3_7q21.3"; locus "HML3_7q21.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0127"; model_cov "6020"; model_pct "100.0"; chr7 rmsk exon 94722293 94722801 3891 - . gene_id "HML3_7q21.3"; transcript_id "HML3_7q21.3"; locus "HML3_7q21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0127"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 94722802 94728800 48326 - . gene_id "HML3_7q21.3"; transcript_id "HML3_7q21.3"; locus "HML3_7q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0127"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 94728801 94729309 3865 - . gene_id "HML3_7q21.3"; transcript_id "HML3_7q21.3"; locus "HML3_7q21.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0127"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10FH_7q21.3 ### chr7 rmsk gene 94877725 94883095 . + . gene_id "HERVIP10FH_7q21.3"; transcript_id "HERVIP10FH_7q21.3"; locus "HERVIP10FH_7q21.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0083"; model_cov "7717"; model_pct "100.0"; chr7 rmsk exon 94877725 94878226 2522 + . gene_id "HERVIP10FH_7q21.3"; transcript_id "HERVIP10FH_7q21.3"; locus "HERVIP10FH_7q21.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0083"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 94878230 94882902 17235 + . gene_id "HERVIP10FH_7q21.3"; transcript_id "HERVIP10FH_7q21.3"; locus "HERVIP10FH_7q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0083"; repClass "LTR"; repEnd "5098"; repFamily "ERV1"; repLeft "-4"; repStart "-2619"; chr7 rmsk exon 94882906 94883095 1242 + . gene_id "HERVIP10FH_7q21.3"; transcript_id "HERVIP10FH_7q21.3"; locus "HERVIP10FH_7q21.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0083"; repClass "LTR"; repEnd "197"; repFamily "ERV1"; repLeft "-314"; repStart "1"; ### HERVL40_7q21.3 ### chr7 rmsk gene 95211179 95213283 . + . gene_id "HERVL40_7q21.3"; transcript_id "HERVL40_7q21.3"; locus "HERVL40_7q21.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0213"; model_cov "929"; model_pct "16.8"; chr7 rmsk exon 95211179 95211704 1470 + . gene_id "HERVL40_7q21.3"; transcript_id "HERVL40_7q21.3"; locus "HERVL40_7q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0213"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "-2237"; repStart "2729"; chr7 rmsk exon 95211990 95212081 1470 + . gene_id "HERVL40_7q21.3"; transcript_id "HERVL40_7q21.3"; locus "HERVL40_7q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0213"; repClass "LTR"; repEnd "3369"; repFamily "ERVL"; repLeft "-2161"; repStart "3294"; chr7 rmsk exon 95212803 95213083 967 + . gene_id "HERVL40_7q21.3"; transcript_id "HERVL40_7q21.3"; locus "HERVL40_7q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0213"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "-3"; repStart "5237"; chr7 rmsk exon 95213087 95213283 567 + . gene_id "HERVL40_7q21.3"; transcript_id "HERVL40_7q21.3"; locus "HERVL40_7q21.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0213"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "-252"; repStart "1"; ### HERVFRD_7q21.3 ### chr7 rmsk gene 95341885 95352696 . + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0083"; model_cov "7484"; model_pct "100.0"; chr7 rmsk exon 95341885 95342588 4064 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0083"; repClass "LTR"; repEnd "702"; repFamily "ERV1"; repLeft "-32"; repStart "2"; chr7 rmsk exon 95342599 95343817 6479 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0083"; repClass "LTR"; repEnd "1256"; repFamily "ERV1"; repLeft "-5949"; repStart "1"; chr7 rmsk exon 95344201 95348456 13821 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0083"; repClass "LTR"; repEnd "5397"; repFamily "ERV1"; repLeft "-1808"; repStart "1379"; chr7 rmsk exon 95348912 95349671 1151 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0083"; repClass "LTR"; repEnd "6320"; repFamily "ERV1"; repLeft "-885"; repStart "5196"; chr7 rmsk exon 95350855 95351987 7785 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0083"; repClass "LTR"; repEnd "7173"; repFamily "ERV1"; repLeft "-32"; repStart "6086"; chr7 rmsk exon 95351995 95352696 3698 + . gene_id "HERVFRD_7q21.3"; transcript_id "HERVFRD_7q21.3"; locus "HERVFRD_7q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0083"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERV316A3_7q21.3c ### chr7 rmsk gene 96100026 96103376 . + . gene_id "ERV316A3_7q21.3c"; transcript_id "ERV316A3_7q21.3c"; locus "ERV316A3_7q21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1413"; model_cov "2848"; model_pct "54.5"; chr7 rmsk exon 96100026 96100337 1210 + . gene_id "ERV316A3_7q21.3c"; transcript_id "ERV316A3_7q21.3c"; locus "ERV316A3_7q21.3c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1413"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "-151"; repStart "1"; chr7 rmsk exon 96100464 96100650 8847 + . gene_id "ERV316A3_7q21.3c"; transcript_id "ERV316A3_7q21.3c"; locus "ERV316A3_7q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1413"; repClass "LTR"; repEnd "978"; repFamily "ERVL"; repLeft "-4248"; repStart "773"; chr7 rmsk exon 96100683 96103376 8847 + . gene_id "ERV316A3_7q21.3c"; transcript_id "ERV316A3_7q21.3c"; locus "ERV316A3_7q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1413"; repClass "LTR"; repEnd "3622"; repFamily "ERVL"; repLeft "-1604"; repStart "979"; ### HERVL_7q21.3 ### chr7 rmsk gene 96454544 96457944 . + . gene_id "HERVL_7q21.3"; transcript_id "HERVL_7q21.3"; locus "HERVL_7q21.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0705"; model_cov "2884"; model_pct "51.0"; chr7 rmsk exon 96454544 96457421 21769 + . gene_id "HERVL_7q21.3"; transcript_id "HERVL_7q21.3"; locus "HERVL_7q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0705"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2770"; chr7 rmsk exon 96457422 96457849 2940 + . gene_id "HERVL_7q21.3"; transcript_id "HERVL_7q21.3"; locus "HERVL_7q21.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0705"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr7 rmsk exon 96457881 96457944 2940 + . gene_id "HERVL_7q21.3"; transcript_id "HERVL_7q21.3"; locus "HERVL_7q21.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0705"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### ERVLE_7q21.3b ### chr7 rmsk gene 97205384 97206974 . - . gene_id "ERVLE_7q21.3b"; transcript_id "ERVLE_7q21.3b"; locus "ERVLE_7q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1881"; model_cov "1590"; model_pct "28.1"; chr7 rmsk exon 97205384 97205916 583 - . gene_id "ERVLE_7q21.3b"; transcript_id "ERVLE_7q21.3b"; locus "ERVLE_7q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1881"; repClass "LTR"; repEnd "5614"; repFamily "ERVL"; repLeft "5094"; repStart "-53"; chr7 rmsk exon 97205935 97206974 3845 - . gene_id "ERVLE_7q21.3b"; transcript_id "ERVLE_7q21.3b"; locus "ERVLE_7q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1881"; repClass "LTR"; repEnd "5018"; repFamily "ERVL"; repLeft "3948"; repStart "-649"; ### ERVLE_7q21.3c ### chr7 rmsk gene 97217956 97218806 . - . gene_id "ERVLE_7q21.3c"; transcript_id "ERVLE_7q21.3c"; locus "ERVLE_7q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1882"; model_cov "931"; model_pct "16.4"; chr7 rmsk exon 97217956 97218806 1626 - . gene_id "ERVLE_7q21.3c"; transcript_id "ERVLE_7q21.3c"; locus "ERVLE_7q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1882"; repClass "LTR"; repEnd "3913"; repFamily "ERVL"; repLeft "2982"; repStart "-1754"; ### HERVL74_7q21.3b ### chr7 rmsk gene 97273012 97275172 . - . gene_id "HERVL74_7q21.3b"; transcript_id "HERVL74_7q21.3b"; locus "HERVL74_7q21.3b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0047"; model_cov "2191"; model_pct "38.5"; chr7 rmsk exon 97273012 97273632 2658 - . gene_id "HERVL74_7q21.3b"; transcript_id "HERVL74_7q21.3b"; locus "HERVL74_7q21.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0047"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "4589"; repStart "-464"; chr7 rmsk exon 97273627 97273715 553 - . gene_id "HERVL74_7q21.3b"; transcript_id "HERVL74_7q21.3b"; locus "HERVL74_7q21.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0047"; repClass "LTR"; repEnd "4017"; repFamily "ERVL"; repLeft "3925"; repStart "-1668"; chr7 rmsk exon 97273755 97273917 1032 - . gene_id "HERVL74_7q21.3b"; transcript_id "HERVL74_7q21.3b"; locus "HERVL74_7q21.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0047"; repClass "LTR"; repEnd "3641"; repFamily "ERVL"; repLeft "3479"; repStart "-2044"; chr7 rmsk exon 97273933 97275172 3446 - . gene_id "HERVL74_7q21.3b"; transcript_id "HERVL74_7q21.3b"; locus "HERVL74_7q21.3b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0047"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "1718"; repStart "-2662"; ### ERVLE_7q21.3d ### chr7 rmsk gene 97659406 97661846 . - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1883"; model_cov "1942"; model_pct "34.3"; chr7 rmsk exon 97659406 97659717 725 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "4930"; repStart "-431"; chr7 rmsk exon 97659764 97659994 2215 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "2440"; repFamily "ERVL"; repLeft "2204"; repStart "-3227"; chr7 rmsk exon 97660156 97660444 2215 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "2203"; repFamily "ERVL"; repLeft "1926"; repStart "-3464"; chr7 rmsk exon 97660443 97661262 2220 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "1346"; repFamily "ERVL"; repLeft "461"; repStart "-4321"; chr7 rmsk exon 97661363 97661592 986 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "29"; repStart "-5400"; chr7 rmsk exon 97661593 97661846 404 - . gene_id "ERVLE_7q21.3d"; transcript_id "ERVLE_7q21.3d"; locus "ERVLE_7q21.3d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_1883"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "355"; repStart "-18"; ### ERVLB4_7q21.3b ### chr7 rmsk gene 97930076 97930678 . + . gene_id "ERVLB4_7q21.3b"; transcript_id "ERVLB4_7q21.3b"; locus "ERVLB4_7q21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0831"; model_cov "631"; model_pct "11.0"; chr7 rmsk exon 97930076 97930678 3131 + . gene_id "ERVLB4_7q21.3b"; transcript_id "ERVLB4_7q21.3b"; locus "ERVLB4_7q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0831"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_7q21.3 ### chr7 rmsk gene 97951319 97955393 . - . gene_id "HERVE_7q21.3"; transcript_id "HERVE_7q21.3"; locus "HERVE_7q21.3"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0058"; model_cov "4057"; model_pct "51.9"; chr7 rmsk exon 97951319 97955393 29230 - . gene_id "HERVE_7q21.3"; transcript_id "HERVE_7q21.3"; locus "HERVE_7q21.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0058"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### ERVLB4_7q22.1a ### chr7 rmsk gene 99553455 99556265 . - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0833"; model_cov "1776"; model_pct "31.1"; chr7 rmsk exon 99553455 99554198 1915 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "4981"; repFamily "ERVL"; repLeft "4169"; repStart "-733"; chr7 rmsk exon 99554507 99554583 1915 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "4168"; repFamily "ERVL"; repLeft "4098"; repStart "-1546"; chr7 rmsk exon 99554600 99554946 906 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "3861"; repFamily "ERVL"; repLeft "3509"; repStart "-1853"; chr7 rmsk exon 99554985 99555027 1080 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "3572"; repFamily "ERVL"; repLeft "3537"; repStart "-2142"; chr7 rmsk exon 99555481 99555626 1080 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "3536"; repFamily "ERVL"; repLeft "3373"; repStart "-2178"; chr7 rmsk exon 99555934 99556265 1080 - . gene_id "ERVLB4_7q22.1a"; transcript_id "ERVLB4_7q22.1a"; locus "ERVLB4_7q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0833"; repClass "LTR"; repEnd "3372"; repFamily "ERVL"; repLeft "3028"; repStart "-2342"; ### HERVH_7q22.1a ### chr7 rmsk gene 99723151 99729932 . + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0650"; model_cov "6406"; model_pct "83.1"; chr7 rmsk exon 99723151 99723575 2576 + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0650"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr7 rmsk exon 99723576 99724009 1848 + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0650"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-7241"; repStart "1"; chr7 rmsk exon 99724069 99728279 14915 + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0650"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-1805"; repStart "1197"; chr7 rmsk exon 99728280 99729506 6320 + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0650"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6489"; chr7 rmsk exon 99729507 99729932 2679 + . gene_id "HERVH_7q22.1a"; transcript_id "HERVH_7q22.1a"; locus "HERVH_7q22.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0650"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVP71A_7q22.1 ### chr7 rmsk gene 99807352 99809199 . - . gene_id "HERVP71A_7q22.1"; transcript_id "HERVP71A_7q22.1"; locus "HERVP71A_7q22.1"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0039"; model_cov "1025"; model_pct "13.5"; chr7 rmsk exon 99807352 99808380 7610 - . gene_id "HERVP71A_7q22.1"; transcript_id "HERVP71A_7q22.1"; locus "HERVP71A_7q22.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0039"; repClass "LTR"; repEnd "1026"; repFamily "ERV1"; repLeft "1"; repStart "-6564"; chr7 rmsk exon 99808381 99808452 3367 - . gene_id "HERVP71A_7q22.1"; transcript_id "HERVP71A_7q22.1"; locus "HERVP71A_7q22.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0039"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "399"; repStart "0"; chr7 rmsk exon 99808820 99809199 3367 - . gene_id "HERVP71A_7q22.1"; transcript_id "HERVP71A_7q22.1"; locus "HERVP71A_7q22.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0039"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "15"; repStart "-61"; ### ERVLE_7q22.1a ### chr7 rmsk gene 99878620 99879430 . + . gene_id "ERVLE_7q22.1a"; transcript_id "ERVLE_7q22.1a"; locus "ERVLE_7q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1884"; model_cov "871"; model_pct "15.4"; chr7 rmsk exon 99878620 99879430 3473 + . gene_id "ERVLE_7q22.1a"; transcript_id "ERVLE_7q22.1a"; locus "ERVLE_7q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1884"; repClass "LTR"; repEnd "5409"; repFamily "ERVL"; repLeft "-258"; repStart "4538"; ### HERVL32_7q22.1 ### chr7 rmsk gene 99896194 99899513 . + . gene_id "HERVL32_7q22.1"; transcript_id "HERVL32_7q22.1"; locus "HERVL32_7q22.1"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0028"; model_cov "939"; model_pct "27.5"; chr7 rmsk exon 99896194 99896634 2180 + . gene_id "HERVL32_7q22.1"; transcript_id "HERVL32_7q22.1"; locus "HERVL32_7q22.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0028"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr7 rmsk exon 99896635 99897382 3178 + . gene_id "HERVL32_7q22.1"; transcript_id "HERVL32_7q22.1"; locus "HERVL32_7q22.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0028"; repClass "LTR"; repEnd "757"; repFamily "ERVL"; repLeft "-2661"; repStart "1"; chr7 rmsk exon 99898887 99899068 702 + . gene_id "HERVL32_7q22.1"; transcript_id "HERVL32_7q22.1"; locus "HERVL32_7q22.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0028"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "-6"; repStart "3229"; chr7 rmsk exon 99899077 99899513 2224 + . gene_id "HERVL32_7q22.1"; transcript_id "HERVL32_7q22.1"; locus "HERVL32_7q22.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0028"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HML4_7q22.1 ### chr7 rmsk gene 99977146 99979562 . + . gene_id "HML4_7q22.1"; transcript_id "HML4_7q22.1"; locus "HML4_7q22.1"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0009"; model_cov "1363"; model_pct "16.8"; chr7 rmsk exon 99977146 99978514 6527 + . gene_id "HML4_7q22.1"; transcript_id "HML4_7q22.1"; locus "HML4_7q22.1"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0009"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "0"; repStart "6753"; chr7 rmsk exon 99978515 99979562 8157 + . gene_id "HML4_7q22.1"; transcript_id "HML4_7q22.1"; locus "HML4_7q22.1"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0009"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HARLEQUIN_7q22.1 ### chr7 rmsk gene 100838700 100847185 . + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0098"; model_cov "6491"; model_pct "94.1"; chr7 rmsk exon 100838700 100839042 3324 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "335"; repFamily "ERV1"; repLeft "-128"; repStart "1"; chr7 rmsk exon 100839338 100839462 3324 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "336"; chr7 rmsk exon 100839463 100839760 1962 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "-653"; repFamily "ERV1"; repLeft "-7549"; repStart "-950"; chr7 rmsk exon 100839970 100841080 7382 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "1412"; repFamily "ERV1"; repLeft "-5484"; repStart "286"; chr7 rmsk exon 100841093 100845338 34778 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "6129"; repFamily "ERV1"; repLeft "-767"; repStart "1826"; chr7 rmsk exon 100845649 100846284 34778 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "-138"; repStart "6130"; chr7 rmsk exon 100846581 100846723 34778 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6759"; chr7 rmsk exon 100846724 100847185 3720 + . gene_id "HARLEQUIN_7q22.1"; transcript_id "HARLEQUIN_7q22.1"; locus "HARLEQUIN_7q22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0098"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_7q22.1b ### chr7 rmsk gene 100922282 100928020 . + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0651"; model_cov "5118"; model_pct "66.4"; chr7 rmsk exon 100922282 100922669 2183 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "8"; chr7 rmsk exon 100922672 100925567 15215 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr7 rmsk exon 100925555 100926411 5649 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3141"; chr7 rmsk exon 100926407 100927013 2836 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr7 rmsk exon 100927015 100927230 1375 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 100927231 100927604 2301 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr7 rmsk exon 100927607 100928020 2282 + . gene_id "HERVH_7q22.1b"; transcript_id "HERVH_7q22.1b"; locus "HERVH_7q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0651"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-10"; repStart "3"; ### ERVLE_7q22.1b ### chr7 rmsk gene 101580742 101583339 . + . gene_id "ERVLE_7q22.1b"; transcript_id "ERVLE_7q22.1b"; locus "ERVLE_7q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1887"; model_cov "837"; model_pct "14.8"; chr7 rmsk exon 101580742 101581021 614 + . gene_id "ERVLE_7q22.1b"; transcript_id "ERVLE_7q22.1b"; locus "ERVLE_7q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1887"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4427"; chr7 rmsk exon 101581313 101581460 614 + . gene_id "ERVLE_7q22.1b"; transcript_id "ERVLE_7q22.1b"; locus "ERVLE_7q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1887"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "-799"; repStart "4723"; chr7 rmsk exon 101582921 101583339 710 + . gene_id "ERVLE_7q22.1b"; transcript_id "ERVLE_7q22.1b"; locus "ERVLE_7q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1887"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-406"; repStart "4864"; ### ERVLE_7q22.1c ### chr7 rmsk gene 102386901 102387342 . - . gene_id "ERVLE_7q22.1c"; transcript_id "ERVLE_7q22.1c"; locus "ERVLE_7q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1888"; model_cov "583"; model_pct "10.3"; chr7 rmsk exon 102386901 102387342 579 - . gene_id "ERVLE_7q22.1c"; transcript_id "ERVLE_7q22.1c"; locus "ERVLE_7q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1888"; repClass "LTR"; repEnd "4453"; repFamily "ERVL"; repLeft "3870"; repStart "-1214"; ### HERVH48_7q22.1 ### chr7 rmsk gene 102973210 102978728 . + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0026"; model_cov "3982"; model_pct "59.8"; chr7 rmsk exon 102973210 102973616 2980 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 102973617 102974108 19732 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-6170"; repStart "1"; chr7 rmsk exon 102974409 102977040 19732 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "3158"; repFamily "ERV1"; repLeft "-3496"; repStart "485"; chr7 rmsk exon 102977032 102977649 5506 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "6457"; repFamily "ERV1"; repLeft "-197"; repStart "5827"; chr7 rmsk exon 102978120 102978321 5506 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "6458"; chr7 rmsk exon 102978322 102978728 3032 + . gene_id "HERVH48_7q22.1"; transcript_id "HERVH48_7q22.1"; locus "HERVH48_7q22.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0026"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7q22.1b ### chr7 rmsk gene 102982042 102984570 . - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0834"; model_cov "1700"; model_pct "29.8"; chr7 rmsk exon 102982042 102982637 3199 - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0834"; repClass "LTR"; repEnd "5067"; repFamily "ERVL"; repLeft "4491"; repStart "-647"; chr7 rmsk exon 102982847 102983408 6071 - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0834"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "571"; repStart "-4588"; chr7 rmsk exon 102983720 102984291 6071 - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0834"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "1"; repStart "-5144"; chr7 rmsk exon 102984292 102984348 336 - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0834"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "500"; repStart "0"; chr7 rmsk exon 102984392 102984570 566 - . gene_id "ERVLB4_7q22.1b"; transcript_id "ERVLB4_7q22.1b"; locus "ERVLB4_7q22.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0834"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "231"; repStart "-39"; ### HERVIP10FH_7q22.1 ### chr7 rmsk gene 103153306 103156543 . + . gene_id "HERVIP10FH_7q22.1"; transcript_id "HERVIP10FH_7q22.1"; locus "HERVIP10FH_7q22.1"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0084"; model_cov "3234"; model_pct "63.4"; chr7 rmsk exon 103153306 103154415 7992 + . gene_id "HERVIP10FH_7q22.1"; transcript_id "HERVIP10FH_7q22.1"; locus "HERVIP10FH_7q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0084"; repClass "LTR"; repEnd "-383"; repFamily "ERV1"; repLeft "-5485"; repStart "-1533"; chr7 rmsk exon 103154403 103155791 10239 + . gene_id "HERVIP10FH_7q22.1"; transcript_id "HERVIP10FH_7q22.1"; locus "HERVIP10FH_7q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0084"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "-1816"; repStart "1929"; chr7 rmsk exon 103155831 103156543 10239 + . gene_id "HERVIP10FH_7q22.1"; transcript_id "HERVIP10FH_7q22.1"; locus "HERVIP10FH_7q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0084"; repClass "LTR"; repEnd "4014"; repFamily "ERV1"; repLeft "-1088"; repStart "3287"; ### MER101_7q22.1a ### chr7 rmsk gene 104178911 104181503 . + . gene_id "MER101_7q22.1a"; transcript_id "MER101_7q22.1a"; locus "MER101_7q22.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0213"; model_cov "1839"; model_pct "27.7"; chr7 rmsk exon 104178911 104179115 1475 + . gene_id "MER101_7q22.1a"; transcript_id "MER101_7q22.1a"; locus "MER101_7q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0213"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "-4344"; repStart "2243"; chr7 rmsk exon 104179249 104179719 1475 + . gene_id "MER101_7q22.1a"; transcript_id "MER101_7q22.1a"; locus "MER101_7q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0213"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "-3877"; repStart "2296"; chr7 rmsk exon 104179841 104181503 5451 + . gene_id "MER101_7q22.1a"; transcript_id "MER101_7q22.1a"; locus "MER101_7q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0213"; repClass "LTR"; repEnd "5365"; repFamily "ERV1"; repLeft "-1274"; repStart "4044"; ### MER101_7q22.1b ### chr7 rmsk gene 104181814 104183882 . + . gene_id "MER101_7q22.1b"; transcript_id "MER101_7q22.1b"; locus "MER101_7q22.1b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0214"; model_cov "1316"; model_pct "19.8"; chr7 rmsk exon 104181814 104182852 5444 + . gene_id "MER101_7q22.1b"; transcript_id "MER101_7q22.1b"; locus "MER101_7q22.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0214"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3603"; chr7 rmsk exon 104183142 104183448 5444 + . gene_id "MER101_7q22.1b"; transcript_id "MER101_7q22.1b"; locus "MER101_7q22.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0214"; repClass "LTR"; repEnd "6632"; repFamily "ERV1"; repLeft "-7"; repStart "6315"; chr7 rmsk exon 104183452 104183882 2471 + . gene_id "MER101_7q22.1b"; transcript_id "MER101_7q22.1b"; locus "MER101_7q22.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0214"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-2"; repStart "5"; ### ERV316A3_7q22.2a ### chr7 rmsk gene 104251680 104253317 . + . gene_id "ERV316A3_7q22.2a"; transcript_id "ERV316A3_7q22.2a"; locus "ERV316A3_7q22.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1414"; model_cov "1118"; model_pct "21.4"; chr7 rmsk exon 104251680 104252597 2361 + . gene_id "ERV316A3_7q22.2a"; transcript_id "ERV316A3_7q22.2a"; locus "ERV316A3_7q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1414"; repClass "LTR"; repEnd "4847"; repFamily "ERVL"; repLeft "-379"; repStart "3913"; chr7 rmsk exon 104252641 104252824 603 + . gene_id "ERV316A3_7q22.2a"; transcript_id "ERV316A3_7q22.2a"; locus "ERV316A3_7q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1414"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-52"; repStart "4990"; chr7 rmsk exon 104252882 104253317 1546 + . gene_id "ERV316A3_7q22.2a"; transcript_id "ERV316A3_7q22.2a"; locus "ERV316A3_7q22.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1414"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERV316A3_7q22.2b ### chr7 rmsk gene 104300067 104300827 . - . gene_id "ERV316A3_7q22.2b"; transcript_id "ERV316A3_7q22.2b"; locus "ERV316A3_7q22.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1415"; model_cov "677"; model_pct "13.0"; chr7 rmsk exon 104300067 104300298 566 - . gene_id "ERV316A3_7q22.2b"; transcript_id "ERV316A3_7q22.2b"; locus "ERV316A3_7q22.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1415"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "198"; repStart "-12"; chr7 rmsk exon 104300300 104300827 1215 - . gene_id "ERV316A3_7q22.2b"; transcript_id "ERV316A3_7q22.2b"; locus "ERV316A3_7q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1415"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "2374"; repStart "-2175"; ### HERVL_7q22.2 ### chr7 rmsk gene 104687991 104691770 . + . gene_id "HERVL_7q22.2"; transcript_id "HERVL_7q22.2"; locus "HERVL_7q22.2"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0708"; model_cov "3907"; model_pct "69.1"; chr7 rmsk exon 104687991 104691770 19855 + . gene_id "HERVL_7q22.2"; transcript_id "HERVL_7q22.2"; locus "HERVL_7q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0708"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "-1641"; repStart "106"; ### HML2_7q22.2 ### chr7 rmsk gene 104748902 104752819 . - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0059"; model_cov "3915"; model_pct "52.0"; chr7 rmsk exon 104748902 104752819 33350 - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0059"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "4"; repStart "-3617"; ### MER4_7q22.3 ### chr7 rmsk gene 106451448 106455433 . - . gene_id "MER4_7q22.3"; transcript_id "MER4_7q22.3"; locus "MER4_7q22.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0394"; model_cov "4930"; model_pct "74.7"; chr7 rmsk exon 106451448 106454059 12147 - . gene_id "MER4_7q22.3"; transcript_id "MER4_7q22.3"; locus "MER4_7q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0394"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4172"; repStart "0"; chr7 rmsk exon 106454059 106455433 2804 - . gene_id "MER4_7q22.3"; transcript_id "MER4_7q22.3"; locus "MER4_7q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0394"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "1177"; repStart "-2917"; ### MER41_7q22.3a ### chr7 rmsk gene 106455435 106461177 . - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0277"; model_cov "4748"; model_pct "79.9"; chr7 rmsk exon 106455435 106456035 4147 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0277"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 106456036 106457146 12003 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0277"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4825"; repStart "0"; chr7 rmsk exon 106457456 106457515 12003 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0277"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "4779"; repStart "-1122"; chr7 rmsk exon 106457818 106459037 12003 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0277"; repClass "LTR"; repEnd "4778"; repFamily "ERV1"; repLeft "2748"; repStart "-1168"; chr7 rmsk exon 106459029 106460559 9561 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0277"; repClass "LTR"; repEnd "1553"; repFamily "ERV1"; repLeft "1"; repStart "-4393"; chr7 rmsk exon 106460560 106461177 4385 - . gene_id "MER41_7q22.3a"; transcript_id "MER41_7q22.3a"; locus "MER41_7q22.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0277"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7q22.3 ### chr7 rmsk gene 106475939 106477621 . + . gene_id "ERV316A3_7q22.3"; transcript_id "ERV316A3_7q22.3"; locus "ERV316A3_7q22.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1416"; model_cov "1387"; model_pct "26.5"; chr7 rmsk exon 106475939 106476005 273 + . gene_id "ERV316A3_7q22.3"; transcript_id "ERV316A3_7q22.3"; locus "ERV316A3_7q22.3"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1416"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "392"; chr7 rmsk exon 106476066 106477250 2492 + . gene_id "ERV316A3_7q22.3"; transcript_id "ERV316A3_7q22.3"; locus "ERV316A3_7q22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1416"; repClass "LTR"; repEnd "4891"; repFamily "ERVL"; repLeft "-335"; repStart "3704"; chr7 rmsk exon 106477434 106477621 474 + . gene_id "ERV316A3_7q22.3"; transcript_id "ERV316A3_7q22.3"; locus "ERV316A3_7q22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1416"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "-141"; repStart "4885"; ### HERVH_7q22.3a ### chr7 rmsk gene 106527752 106533658 . - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0652"; model_cov "4867"; model_pct "63.1"; chr7 rmsk exon 106527752 106528181 3160 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 106528182 106528734 3278 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr7 rmsk exon 106528729 106528993 1492 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "6015"; repFamily "ERV1"; repLeft "5747"; repStart "-1698"; chr7 rmsk exon 106529022 106530769 5270 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "3140"; repStart "-2879"; chr7 rmsk exon 106530749 106532964 12203 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "801"; repStart "-4718"; chr7 rmsk exon 106533025 106533190 713 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "304"; repStart "-7254"; chr7 rmsk exon 106533200 106533658 3618 - . gene_id "HERVH_7q22.3a"; transcript_id "HERVH_7q22.3a"; locus "HERVH_7q22.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0652"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7q22.3 ### chr7 rmsk gene 106548063 106548761 . - . gene_id "ERVLE_7q22.3"; transcript_id "ERVLE_7q22.3"; locus "ERVLE_7q22.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1891"; model_cov "705"; model_pct "12.4"; chr7 rmsk exon 106548063 106548761 1655 - . gene_id "ERVLE_7q22.3"; transcript_id "ERVLE_7q22.3"; locus "ERVLE_7q22.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1891"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "4656"; repStart "-306"; ### MER41_7q22.3b ### chr7 rmsk gene 106796527 106801816 . - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0279"; model_cov "3611"; model_pct "60.7"; chr7 rmsk exon 106796527 106796945 4031 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0279"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "1"; repStart "-130"; chr7 rmsk exon 106796946 106798625 13041 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0279"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4225"; repStart "-2"; chr7 rmsk exon 106798906 106800117 13041 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0279"; repClass "LTR"; repEnd "4224"; repFamily "ERV1"; repLeft "3469"; repStart "-1722"; chr7 rmsk exon 106800153 106801122 5501 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0279"; repClass "LTR"; repEnd "1083"; repFamily "ERV1"; repLeft "1"; repStart "-4863"; chr7 rmsk exon 106801156 106801207 276 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0279"; repClass "LTR"; repEnd "-1754"; repFamily "ERV1"; repLeft "-1809"; repStart "-7700"; chr7 rmsk exon 106801274 106801816 4239 - . gene_id "MER41_7q22.3b"; transcript_id "MER41_7q22.3b"; locus "MER41_7q22.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0279"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_7q22.3 ### chr7 rmsk gene 106815882 106826270 . + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; category "insert*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0835"; model_cov "5701"; model_pct "99.8"; chr7 rmsk exon 106815882 106816091 2368 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "217"; repFamily "ERVL"; repLeft "-337"; repStart "1"; chr7 rmsk exon 106816134 106816451 2368 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-35"; repStart "218"; chr7 rmsk exon 106816544 106817669 25629 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4565"; repStart "1"; chr7 rmsk exon 106818861 106819125 25629 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "1413"; repFamily "ERVL"; repLeft "-4301"; repStart "1150"; chr7 rmsk exon 106819835 106822678 25629 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "4304"; repFamily "ERVL"; repLeft "-1410"; repStart "1414"; chr7 rmsk exon 106822680 106822781 576 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0835"; prev_strand "-"; repClass "LTR"; repEnd "109"; repFamily "ERVL"; repLeft "1"; repStart "-445"; chr7 rmsk exon 106822782 106823044 6030 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; prev_strand "-"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5468"; repStart "0"; chr7 rmsk exon 106823335 106823412 6030 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; prev_strand "-"; repClass "LTR"; repEnd "5467"; repFamily "ERVL"; repLeft "5379"; repStart "-247"; chr7 rmsk exon 106823446 106824064 6030 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; prev_strand "-"; repClass "LTR"; repEnd "5378"; repFamily "ERVL"; repLeft "4752"; repStart "-336"; chr7 rmsk exon 106824064 106825282 8718 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "5601"; repFamily "ERVL"; repLeft "-113"; repStart "4311"; chr7 rmsk exon 106825587 106825698 8718 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5602"; chr7 rmsk exon 106825699 106826270 2721 + . gene_id "ERVLB4_7q22.3"; transcript_id "ERVLB4_7q22.3"; locus "ERVLB4_7q22.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0835"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVH_7q22.3b ### chr7 rmsk gene 106829635 106838519 . + . gene_id "HERVH_7q22.3b"; transcript_id "HERVH_7q22.3b"; locus "HERVH_7q22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0653"; model_cov "7721"; model_pct "100.0"; chr7 rmsk exon 106829635 106830073 2902 + . gene_id "HERVH_7q22.3b"; transcript_id "HERVH_7q22.3b"; locus "HERVH_7q22.3b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0653"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 106830074 106835246 9272 + . gene_id "HERVH_7q22.3b"; transcript_id "HERVH_7q22.3b"; locus "HERVH_7q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0653"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "-2618"; repStart "1"; chr7 rmsk exon 106835466 106838081 17538 + . gene_id "HERVH_7q22.3b"; transcript_id "HERVH_7q22.3b"; locus "HERVH_7q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0653"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5086"; chr7 rmsk exon 106838082 106838519 2946 + . gene_id "HERVH_7q22.3b"; transcript_id "HERVH_7q22.3b"; locus "HERVH_7q22.3b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0653"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### PABLB_7q22.3 ### chr7 rmsk gene 107104335 107104870 . - . gene_id "PABLB_7q22.3"; transcript_id "PABLB_7q22.3"; locus "PABLB_7q22.3"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0054"; model_cov "834"; model_pct "11.7"; chr7 rmsk exon 107104335 107104870 502 - . gene_id "PABLB_7q22.3"; transcript_id "PABLB_7q22.3"; locus "PABLB_7q22.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0054"; repClass "LTR"; repEnd "5723"; repFamily "ERV1"; repLeft "4889"; repStart "-1399"; ### MER61_7q22.3 ### chr7 rmsk gene 107381038 107384641 . + . gene_id "MER61_7q22.3"; transcript_id "MER61_7q22.3"; locus "MER61_7q22.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0219"; model_cov "3153"; model_pct "60.4"; chr7 rmsk exon 107381038 107382427 17870 + . gene_id "MER61_7q22.3"; transcript_id "MER61_7q22.3"; locus "MER61_7q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0219"; repClass "LTR"; repEnd "3567"; repFamily "ERV1"; repLeft "-1650"; repStart "2063"; chr7 rmsk exon 107382739 107384319 17870 + . gene_id "MER61_7q22.3"; transcript_id "MER61_7q22.3"; locus "MER61_7q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0219"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3568"; chr7 rmsk exon 107384320 107384641 1805 + . gene_id "MER61_7q22.3"; transcript_id "MER61_7q22.3"; locus "MER61_7q22.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0219"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_7q22.3 ### chr7 rmsk gene 107386034 107391346 . + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0062"; model_cov "4106"; model_pct "60.1"; chr7 rmsk exon 107386034 107386434 1134 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "35"; chr7 rmsk exon 107386437 107387157 4831 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "-6096"; repStart "3"; chr7 rmsk exon 107387536 107387676 750 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "2476"; repFamily "ERVK"; repLeft "-4361"; repStart "2327"; chr7 rmsk exon 107387678 107389267 11482 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "5326"; repFamily "ERVK"; repLeft "-1511"; repStart "3720"; chr7 rmsk exon 107389260 107390855 11443 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5224"; chr7 rmsk exon 107390856 107391346 2546 + . gene_id "HML5_7q22.3"; transcript_id "HML5_7q22.3"; locus "HML5_7q22.3"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0062"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_7q22.3 ### chr7 rmsk gene 107462730 107465091 . - . gene_id "HERVL40_7q22.3"; transcript_id "HERVL40_7q22.3"; locus "HERVL40_7q22.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0214"; model_cov "795"; model_pct "14.4"; chr7 rmsk exon 107462730 107463009 818 - . gene_id "HERVL40_7q22.3"; transcript_id "HERVL40_7q22.3"; locus "HERVL40_7q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0214"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "3164"; repStart "-2020"; chr7 rmsk exon 107464062 107464240 499 - . gene_id "HERVL40_7q22.3"; transcript_id "HERVL40_7q22.3"; locus "HERVL40_7q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0214"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "1032"; repStart "-4316"; chr7 rmsk exon 107464361 107464602 286 - . gene_id "HERVL40_7q22.3"; transcript_id "HERVL40_7q22.3"; locus "HERVL40_7q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0214"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "23"; repStart "-5240"; chr7 rmsk exon 107464623 107465091 1573 - . gene_id "HERVL40_7q22.3"; transcript_id "HERVL40_7q22.3"; locus "HERVL40_7q22.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0214"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-118"; repStart "-6"; ### HERVL_7q22.3 ### chr7 rmsk gene 107732303 107739462 . + . gene_id "HERVL_7q22.3"; transcript_id "HERVL_7q22.3"; locus "HERVL_7q22.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0709"; model_cov "5652"; model_pct "100.0"; chr7 rmsk exon 107732303 107732681 2606 + . gene_id "HERVL_7q22.3"; transcript_id "HERVL_7q22.3"; locus "HERVL_7q22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0709"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr7 rmsk exon 107732828 107736660 42308 + . gene_id "HERVL_7q22.3"; transcript_id "HERVL_7q22.3"; locus "HERVL_7q22.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0709"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "-1819"; repStart "1"; chr7 rmsk exon 107737174 107738991 42308 + . gene_id "HERVL_7q22.3"; transcript_id "HERVL_7q22.3"; locus "HERVL_7q22.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0709"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3836"; chr7 rmsk exon 107738992 107739462 3022 + . gene_id "HERVL_7q22.3"; transcript_id "HERVL_7q22.3"; locus "HERVL_7q22.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0709"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVW_7q31.1a ### chr7 rmsk gene 108337281 108344490 . + . gene_id "HERVW_7q31.1a"; transcript_id "HERVW_7q31.1a"; locus "HERVW_7q31.1a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0165"; model_cov "6308"; model_pct "73.1"; chr7 rmsk exon 108337281 108337832 3824 + . gene_id "HERVW_7q31.1a"; transcript_id "HERVW_7q31.1a"; locus "HERVW_7q31.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0165"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "-1"; repStart "254"; chr7 rmsk exon 108337842 108343836 46956 + . gene_id "HERVW_7q31.1a"; transcript_id "HERVW_7q31.1a"; locus "HERVW_7q31.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0165"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2"; chr7 rmsk exon 108343875 108344166 2236 + . gene_id "HERVW_7q31.1a"; transcript_id "HERVW_7q31.1a"; locus "HERVW_7q31.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0165"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr7 rmsk exon 108344167 108344490 2610 + . gene_id "HERVW_7q31.1a"; transcript_id "HERVW_7q31.1a"; locus "HERVW_7q31.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0165"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### HERVL_7q31.1a ### chr7 rmsk gene 108538301 108540367 . + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0710"; model_cov "1544"; model_pct "27.3"; chr7 rmsk exon 108538301 108538639 2218 + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0710"; repClass "LTR"; repEnd "3833"; repFamily "ERVL"; repLeft "-1821"; repStart "3525"; chr7 rmsk exon 108538651 108538918 8584 + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0710"; repClass "LTR"; repEnd "4695"; repFamily "ERVL"; repLeft "-959"; repStart "4417"; chr7 rmsk exon 108538962 108539880 8584 + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0710"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4696"; chr7 rmsk exon 108539883 108540233 2630 + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0710"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "3"; chr7 rmsk exon 108540274 108540367 2630 + . gene_id "HERVL_7q31.1a"; transcript_id "HERVL_7q31.1a"; locus "HERVL_7q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0710"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### HUERSP1_7q31.1 ### chr7 rmsk gene 108624551 108628275 . - . gene_id "HUERSP1_7q31.1"; transcript_id "HUERSP1_7q31.1"; locus "HUERSP1_7q31.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0094"; model_cov "3018"; model_pct "48.2"; chr7 rmsk exon 108624551 108627580 21889 - . gene_id "HUERSP1_7q31.1"; transcript_id "HUERSP1_7q31.1"; locus "HUERSP1_7q31.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0094"; repClass "LTR"; repEnd "3019"; repFamily "ERV1"; repLeft "1"; repStart "-3244"; chr7 rmsk exon 108627581 108628275 5227 - . gene_id "HUERSP1_7q31.1"; transcript_id "HUERSP1_7q31.1"; locus "HUERSP1_7q31.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0094"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_7q31.1b ### chr7 rmsk gene 108669274 108676787 . + . gene_id "HERVL_7q31.1b"; transcript_id "HERVL_7q31.1b"; locus "HERVL_7q31.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0711"; model_cov "5661"; model_pct "100.0"; chr7 rmsk exon 108669274 108669677 2639 + . gene_id "HERVL_7q31.1b"; transcript_id "HERVL_7q31.1b"; locus "HERVL_7q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0711"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 108669678 108671402 12681 + . gene_id "HERVL_7q31.1b"; transcript_id "HERVL_7q31.1b"; locus "HERVL_7q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0711"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "-3930"; repStart "1"; chr7 rmsk exon 108672463 108676396 29643 + . gene_id "HERVL_7q31.1b"; transcript_id "HERVL_7q31.1b"; locus "HERVL_7q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0711"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1716"; chr7 rmsk exon 108676397 108676787 2635 + . gene_id "HERVL_7q31.1b"; transcript_id "HERVL_7q31.1b"; locus "HERVL_7q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0711"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### HUERSP2_7q31.1 ### chr7 rmsk gene 108873882 108878484 . + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0067"; model_cov "3084"; model_pct "99.9"; chr7 rmsk exon 108873882 108874490 4183 + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0067"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "-131"; repStart "1"; chr7 rmsk exon 108874501 108877071 20150 + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0067"; repClass "LTR"; repEnd "2587"; repFamily "ERV1"; repLeft "-501"; repStart "3"; chr7 rmsk exon 108877374 108877873 20150 + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0067"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2588"; chr7 rmsk exon 108877874 108878449 3973 + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0067"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "-166"; repStart "1"; chr7 rmsk exon 108878441 108878484 333 + . gene_id "HUERSP2_7q31.1"; transcript_id "HUERSP2_7q31.1"; locus "HUERSP2_7q31.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0067"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "-7"; repStart "722"; ### ERV316A3_7q31.1a ### chr7 rmsk gene 109027824 109029145 . - . gene_id "ERV316A3_7q31.1a"; transcript_id "ERV316A3_7q31.1a"; locus "ERV316A3_7q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1417"; model_cov "874"; model_pct "16.7"; chr7 rmsk exon 109027824 109028231 978 - . gene_id "ERV316A3_7q31.1a"; transcript_id "ERV316A3_7q31.1a"; locus "ERV316A3_7q31.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1417"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 109028314 109029145 2449 - . gene_id "ERV316A3_7q31.1a"; transcript_id "ERV316A3_7q31.1a"; locus "ERV316A3_7q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1417"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4210"; repStart "-142"; ### ERV316A3_7q31.1b ### chr7 rmsk gene 109145877 109148264 . + . gene_id "ERV316A3_7q31.1b"; transcript_id "ERV316A3_7q31.1b"; locus "ERV316A3_7q31.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1418"; model_cov "1995"; model_pct "38.2"; chr7 rmsk exon 109145877 109146946 2197 + . gene_id "ERV316A3_7q31.1b"; transcript_id "ERV316A3_7q31.1b"; locus "ERV316A3_7q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1418"; repClass "LTR"; repEnd "1396"; repFamily "ERVL"; repLeft "-3830"; repStart "294"; chr7 rmsk exon 109147315 109147360 266 + . gene_id "ERV316A3_7q31.1b"; transcript_id "ERV316A3_7q31.1b"; locus "ERV316A3_7q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1418"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "-3765"; repStart "1415"; chr7 rmsk exon 109147400 109148264 1940 + . gene_id "ERV316A3_7q31.1b"; transcript_id "ERV316A3_7q31.1b"; locus "ERV316A3_7q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1418"; repClass "LTR"; repEnd "2055"; repFamily "ERVL"; repLeft "-3171"; repStart "1208"; ### ERVLE_7q31.1a ### chr7 rmsk gene 109263019 109264379 . - . gene_id "ERVLE_7q31.1a"; transcript_id "ERVLE_7q31.1a"; locus "ERVLE_7q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1894"; model_cov "1325"; model_pct "23.4"; chr7 rmsk exon 109263019 109263633 1185 - . gene_id "ERVLE_7q31.1a"; transcript_id "ERVLE_7q31.1a"; locus "ERVLE_7q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1894"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "4278"; repStart "-752"; chr7 rmsk exon 109263680 109263905 532 - . gene_id "ERVLE_7q31.1a"; transcript_id "ERVLE_7q31.1a"; locus "ERVLE_7q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1894"; repClass "LTR"; repEnd "2785"; repFamily "ERVL"; repLeft "2555"; repStart "-2882"; chr7 rmsk exon 109263932 109264379 866 - . gene_id "ERVLE_7q31.1a"; transcript_id "ERVLE_7q31.1a"; locus "ERVLE_7q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1894"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "2028"; repStart "-3181"; ### HERVH_7q31.1a ### chr7 rmsk gene 109591834 109597679 . - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0654"; model_cov "5273"; model_pct "68.4"; chr7 rmsk exon 109591834 109592260 3058 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "1"; repStart "-15"; chr7 rmsk exon 109592261 109592639 2463 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 109592640 109592876 1394 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr7 rmsk exon 109592857 109593519 4242 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 109593522 109597186 15332 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr7 rmsk exon 109597189 109597679 2911 - . gene_id "HERVH_7q31.1a"; transcript_id "HERVH_7q31.1a"; locus "HERVH_7q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0654"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_7q31.1b ### chr7 rmsk gene 109641708 109647640 . - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0655"; model_cov "5340"; model_pct "69.2"; chr7 rmsk exon 109641708 109642141 2393 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 109642142 109642700 3512 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr7 rmsk exon 109642695 109643108 2265 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "6014"; repFamily "ERV1"; repLeft "5593"; repStart "-1699"; chr7 rmsk exon 109643106 109644292 7806 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3994"; repStart "-2564"; chr7 rmsk exon 109644283 109644650 2386 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3357"; repStart "-3977"; chr7 rmsk exon 109644651 109647163 12791 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chr7 rmsk exon 109647164 109647640 2177 - . gene_id "HERVH_7q31.1b"; transcript_id "HERVH_7q31.1b"; locus "HERVH_7q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0655"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_7q31.1a ### chr7 rmsk gene 109742617 109748590 . - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0838"; model_cov "5019"; model_pct "87.8"; chr7 rmsk exon 109742617 109743039 1547 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "3"; repStart "-8"; chr7 rmsk exon 109743048 109746316 8371 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "5590"; repFamily "ERVL"; repLeft "2294"; repStart "-124"; chr7 rmsk exon 109746305 109747059 3278 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "1882"; repFamily "ERVL"; repLeft "1100"; repStart "-3832"; chr7 rmsk exon 109747370 109747455 3278 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "1099"; repFamily "ERVL"; repLeft "1018"; repStart "-4615"; chr7 rmsk exon 109747455 109748296 2572 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "909"; repFamily "ERVL"; repLeft "49"; repStart "-4805"; chr7 rmsk exon 109748321 109748590 569 - . gene_id "ERVLB4_7q31.1a"; transcript_id "ERVLB4_7q31.1a"; locus "ERVLB4_7q31.1a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0838"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "113"; repStart "-19"; ### HERVL_7q31.1c ### chr7 rmsk gene 109790145 109794981 . - . gene_id "HERVL_7q31.1c"; transcript_id "HERVL_7q31.1c"; locus "HERVL_7q31.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0712"; model_cov "4294"; model_pct "75.9"; chr7 rmsk exon 109790145 109790206 2827 - . gene_id "HERVL_7q31.1c"; transcript_id "HERVL_7q31.1c"; locus "HERVL_7q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0712"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr7 rmsk exon 109790252 109790663 2827 - . gene_id "HERVL_7q31.1c"; transcript_id "HERVL_7q31.1c"; locus "HERVL_7q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0712"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr7 rmsk exon 109790771 109794981 31690 - . gene_id "HERVL_7q31.1c"; transcript_id "HERVL_7q31.1c"; locus "HERVL_7q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0712"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1360"; repStart "0"; ### HERVL_7q31.1d ### chr7 rmsk gene 109801141 109802951 . - . gene_id "HERVL_7q31.1d"; transcript_id "HERVL_7q31.1d"; locus "HERVL_7q31.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0713"; model_cov "1370"; model_pct "24.2"; chr7 rmsk exon 109801141 109802497 10168 - . gene_id "HERVL_7q31.1d"; transcript_id "HERVL_7q31.1d"; locus "HERVL_7q31.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0713"; repClass "LTR"; repEnd "1371"; repFamily "ERVL"; repLeft "1"; repStart "-4283"; chr7 rmsk exon 109802498 109802951 3289 - . gene_id "HERVL_7q31.1d"; transcript_id "HERVL_7q31.1d"; locus "HERVL_7q31.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0713"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_7q31.1c ### chr7 rmsk gene 109956656 109963216 . + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1421"; model_cov "3963"; model_pct "75.8"; chr7 rmsk exon 109956656 109956989 971 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "117"; chr7 rmsk exon 109956995 109958389 1394 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "-4130"; repStart "-487"; chr7 rmsk exon 109958410 109958653 633 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "2109"; repFamily "ERVL"; repLeft "-3117"; repStart "1863"; chr7 rmsk exon 109960970 109961148 769 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "2947"; repFamily "ERVL"; repLeft "-2279"; repStart "2770"; chr7 rmsk exon 109961355 109961791 576 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "-1463"; repStart "3169"; chr7 rmsk exon 109961876 109962569 1071 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "4363"; repFamily "ERVL"; repLeft "-863"; repStart "3519"; chr7 rmsk exon 109962564 109963075 979 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4706"; chr7 rmsk exon 109963078 109963216 517 + . gene_id "ERV316A3_7q31.1c"; transcript_id "ERV316A3_7q31.1c"; locus "ERV316A3_7q31.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1421"; repClass "LTR"; repEnd "150"; repFamily "ERVL"; repLeft "-301"; repStart "15"; ### ERVLB4_7q31.1b ### chr7 rmsk gene 110082325 110084634 . + . gene_id "ERVLB4_7q31.1b"; transcript_id "ERVLB4_7q31.1b"; locus "ERVLB4_7q31.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0839"; model_cov "2344"; model_pct "41.0"; chr7 rmsk exon 110082325 110083171 4130 + . gene_id "ERVLB4_7q31.1b"; transcript_id "ERVLB4_7q31.1b"; locus "ERVLB4_7q31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0839"; repClass "LTR"; repEnd "840"; repFamily "ERVL"; repLeft "-4874"; repStart "20"; chr7 rmsk exon 110083168 110084634 8209 + . gene_id "ERVLB4_7q31.1b"; transcript_id "ERVLB4_7q31.1b"; locus "ERVLB4_7q31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0839"; repClass "LTR"; repEnd "3874"; repFamily "ERVL"; repLeft "-1840"; repStart "2350"; ### ERVLE_7q31.1b ### chr7 rmsk gene 110211633 110215172 . + . gene_id "ERVLE_7q31.1b"; transcript_id "ERVLE_7q31.1b"; locus "ERVLE_7q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1896"; model_cov "1977"; model_pct "34.9"; chr7 rmsk exon 110211633 110211762 595 + . gene_id "ERVLE_7q31.1b"; transcript_id "ERVLE_7q31.1b"; locus "ERVLE_7q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1896"; repClass "LTR"; repEnd "2158"; repFamily "ERVL"; repLeft "-3509"; repStart "2028"; chr7 rmsk exon 110211817 110212405 721 + . gene_id "ERVLE_7q31.1b"; transcript_id "ERVLE_7q31.1b"; locus "ERVLE_7q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1896"; repClass "LTR"; repEnd "3268"; repFamily "ERVL"; repLeft "-2399"; repStart "2663"; chr7 rmsk exon 110212913 110213445 2820 + . gene_id "ERVLE_7q31.1b"; transcript_id "ERVLE_7q31.1b"; locus "ERVLE_7q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1896"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "-2157"; repStart "2939"; chr7 rmsk exon 110214517 110215172 2820 + . gene_id "ERVLE_7q31.1b"; transcript_id "ERVLE_7q31.1b"; locus "ERVLE_7q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1896"; repClass "LTR"; repEnd "4182"; repFamily "ERVL"; repLeft "-1485"; repStart "3511"; ### HERVL_7q31.1e ### chr7 rmsk gene 110435845 110437557 . + . gene_id "HERVL_7q31.1e"; transcript_id "HERVL_7q31.1e"; locus "HERVL_7q31.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0714"; model_cov "1193"; model_pct "21.1"; chr7 rmsk exon 110435845 110437035 9007 + . gene_id "HERVL_7q31.1e"; transcript_id "HERVL_7q31.1e"; locus "HERVL_7q31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0714"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4461"; chr7 rmsk exon 110437036 110437557 1798 + . gene_id "HERVL_7q31.1e"; transcript_id "HERVL_7q31.1e"; locus "HERVL_7q31.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0714"; repClass "LTR"; repEnd "532"; repFamily "ERVL"; repLeft "-22"; repStart "1"; ### ERVLE_7q31.1c ### chr7 rmsk gene 110453546 110457414 . + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1897"; model_cov "2306"; model_pct "40.7"; chr7 rmsk exon 110453546 110453747 1519 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "-5447"; repStart "5"; chr7 rmsk exon 110454101 110454121 1519 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "236"; repFamily "ERVL"; repLeft "-5431"; repStart "221"; chr7 rmsk exon 110454446 110454509 1519 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-5396"; repStart "237"; chr7 rmsk exon 110454810 110455195 1519 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "700"; repFamily "ERVL"; repLeft "-4967"; repStart "272"; chr7 rmsk exon 110455229 110455517 2382 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "1087"; repFamily "ERVL"; repLeft "-4580"; repStart "784"; chr7 rmsk exon 110456191 110457170 2776 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "-3564"; repStart "1053"; chr7 rmsk exon 110457154 110457414 1142 + . gene_id "ERVLE_7q31.1c"; transcript_id "ERVLE_7q31.1c"; locus "ERVLE_7q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1897"; repClass "LTR"; repEnd "4345"; repFamily "ERVL"; repLeft "-1322"; repStart "4084"; ### ERV316A3_7q31.1d ### chr7 rmsk gene 110528040 110529381 . - . gene_id "ERV316A3_7q31.1d"; transcript_id "ERV316A3_7q31.1d"; locus "ERV316A3_7q31.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1422"; model_cov "1431"; model_pct "27.4"; chr7 rmsk exon 110528040 110529124 3430 - . gene_id "ERV316A3_7q31.1d"; transcript_id "ERV316A3_7q31.1d"; locus "ERV316A3_7q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1422"; repClass "LTR"; repEnd "2108"; repFamily "ERVL"; repLeft "913"; repStart "-3118"; chr7 rmsk exon 110529143 110529381 566 - . gene_id "ERV316A3_7q31.1d"; transcript_id "ERV316A3_7q31.1d"; locus "ERV316A3_7q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1422"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "189"; repStart "-4801"; ### HERVL_7q31.1f ### chr7 rmsk gene 111064350 111065899 . + . gene_id "HERVL_7q31.1f"; transcript_id "HERVL_7q31.1f"; locus "HERVL_7q31.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0715"; model_cov "1086"; model_pct "19.2"; chr7 rmsk exon 111064350 111065433 8381 + . gene_id "HERVL_7q31.1f"; transcript_id "HERVL_7q31.1f"; locus "HERVL_7q31.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0715"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4568"; chr7 rmsk exon 111065434 111065899 3068 + . gene_id "HERVL_7q31.1f"; transcript_id "HERVL_7q31.1f"; locus "HERVL_7q31.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0715"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_7q31.1c ### chr7 rmsk gene 111310664 111312842 . - . gene_id "ERVLB4_7q31.1c"; transcript_id "ERVLB4_7q31.1c"; locus "ERVLB4_7q31.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0840"; model_cov "2210"; model_pct "38.7"; chr7 rmsk exon 111310664 111312120 2058 - . gene_id "ERVLB4_7q31.1c"; transcript_id "ERVLB4_7q31.1c"; locus "ERVLB4_7q31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0840"; repClass "LTR"; repEnd "2665"; repFamily "ERVL"; repLeft "1151"; repStart "-3049"; chr7 rmsk exon 111312142 111312842 1048 - . gene_id "ERVLB4_7q31.1c"; transcript_id "ERVLB4_7q31.1c"; locus "ERVLB4_7q31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0840"; repClass "LTR"; repEnd "753"; repFamily "ERVL"; repLeft "57"; repStart "-4961"; ### HERVL_7q31.1g ### chr7 rmsk gene 111332877 111333960 . + . gene_id "HERVL_7q31.1g"; transcript_id "HERVL_7q31.1g"; locus "HERVL_7q31.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0716"; model_cov "624"; model_pct "11.0"; chr7 rmsk exon 111332877 111332915 246 + . gene_id "HERVL_7q31.1g"; transcript_id "HERVL_7q31.1g"; locus "HERVL_7q31.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0716"; repClass "LTR"; repEnd "43"; repFamily "ERVL"; repLeft "-410"; repStart "1"; chr7 rmsk exon 111332916 111333518 4474 + . gene_id "HERVL_7q31.1g"; transcript_id "HERVL_7q31.1g"; locus "HERVL_7q31.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0716"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5030"; chr7 rmsk exon 111333519 111333960 2868 + . gene_id "HERVL_7q31.1g"; transcript_id "HERVL_7q31.1g"; locus "HERVL_7q31.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0716"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HUERSP3_7q31.1 ### chr7 rmsk gene 111796380 111801499 . + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0097"; model_cov "4350"; model_pct "48.8"; chr7 rmsk exon 111796380 111798534 7984 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "822"; chr7 rmsk exon 111798528 111798670 852 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-4239"; repStart "4539"; chr7 rmsk exon 111798670 111799328 4479 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-3342"; repStart "4901"; chr7 rmsk exon 111799314 111800030 3913 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6162"; chr7 rmsk exon 111800051 111800151 285 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "6958"; repFamily "ERV1"; repLeft "-1961"; repStart "6855"; chr7 rmsk exon 111800635 111800891 1338 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr7 rmsk exon 111800898 111801499 2796 + . gene_id "HUERSP3_7q31.1"; transcript_id "HUERSP3_7q31.1"; locus "HUERSP3_7q31.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0097"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERV316A3_7q31.1e ### chr7 rmsk gene 112364075 112370656 . - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1423"; model_cov "3904"; model_pct "74.7"; chr7 rmsk exon 112364075 112364250 448 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "253"; repFamily "ERVL"; repLeft "85"; repStart "-198"; chr7 rmsk exon 112364345 112365831 6746 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "5155"; repFamily "ERVL"; repLeft "3622"; repStart "-71"; chr7 rmsk exon 112366113 112367177 6746 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "3621"; repFamily "ERVL"; repLeft "2526"; repStart "-1605"; chr7 rmsk exon 112367186 112367296 252 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "2408"; repFamily "ERVL"; repLeft "2299"; repStart "-2818"; chr7 rmsk exon 112367295 112367507 654 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "2517"; repFamily "ERVL"; repLeft "2315"; repStart "-2709"; chr7 rmsk exon 112368920 112369435 1380 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "1747"; repStart "-2962"; chr7 rmsk exon 112370063 112370483 939 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "679"; repFamily "ERVL"; repLeft "231"; repStart "-4547"; chr7 rmsk exon 112370487 112370656 503 - . gene_id "ERV316A3_7q31.1e"; transcript_id "ERV316A3_7q31.1e"; locus "ERV316A3_7q31.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1423"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "260"; repStart "-3"; ### HERVL32_7q31.1 ### chr7 rmsk gene 112801732 112804105 . - . gene_id "HERVL32_7q31.1"; transcript_id "HERVL32_7q31.1"; locus "HERVL32_7q31.1"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0030"; model_cov "2131"; model_pct "62.3"; chr7 rmsk exon 112801732 112802060 426 - . gene_id "HERVL32_7q31.1"; transcript_id "HERVL32_7q31.1"; locus "HERVL32_7q31.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0030"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "2159"; repStart "-930"; chr7 rmsk exon 112802386 112804105 3167 - . gene_id "HERVL32_7q31.1"; transcript_id "HERVL32_7q31.1"; locus "HERVL32_7q31.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0030"; repClass "LTR"; repEnd "947"; repFamily "ERVL"; repLeft "-855"; repStart "-2471"; ### HERVH_7q31.1c ### chr7 rmsk gene 113234431 113239308 . - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0656"; model_cov "4029"; model_pct "52.2"; chr7 rmsk exon 113234431 113234902 4119 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 113234903 113235280 2527 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 113235281 113235343 363 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5753"; repStart "-1894"; chr7 rmsk exon 113235348 113235784 2791 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "3492"; repStart "-3783"; chr7 rmsk exon 113235775 113235922 886 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 113235917 113238837 15455 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 113238838 113239308 4039 - . gene_id "HERVH_7q31.1c"; transcript_id "HERVH_7q31.1c"; locus "HERVH_7q31.1c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0656"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_7q31.1a ### chr7 rmsk gene 113319920 113322378 . + . gene_id "HERVL40_7q31.1a"; transcript_id "HERVL40_7q31.1a"; locus "HERVL40_7q31.1a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0217"; model_cov "1305"; model_pct "23.6"; chr7 rmsk exon 113319920 113320237 1035 + . gene_id "HERVL40_7q31.1a"; transcript_id "HERVL40_7q31.1a"; locus "HERVL40_7q31.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0217"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "-143"; repStart "1"; chr7 rmsk exon 113320519 113321830 3957 + . gene_id "HERVL40_7q31.1a"; transcript_id "HERVL40_7q31.1a"; locus "HERVL40_7q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0217"; repClass "LTR"; repEnd "3256"; repFamily "ERVL"; repLeft "-2274"; repStart "1951"; chr7 rmsk exon 113321848 113321971 577 + . gene_id "HERVL40_7q31.1a"; transcript_id "HERVL40_7q31.1a"; locus "HERVL40_7q31.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0217"; repClass "LTR"; repEnd "152"; repFamily "ERVL"; repLeft "-310"; repStart "29"; chr7 rmsk exon 113322050 113322378 1121 + . gene_id "HERVL40_7q31.1a"; transcript_id "HERVL40_7q31.1a"; locus "HERVL40_7q31.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0217"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "132"; ### MER4_7q31.1a ### chr7 rmsk gene 113617476 113623426 . - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0396"; model_cov "5292"; model_pct "80.2"; chr7 rmsk exon 113617476 113617922 3011 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0396"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 113617924 113618416 16418 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6073"; repStart "0"; chr7 rmsk exon 113618728 113620889 16418 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "6072"; repFamily "ERV1"; repLeft "3835"; repStart "-526"; chr7 rmsk exon 113620890 113621711 3819 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "3678"; repFamily "ERV1"; repLeft "2737"; repStart "-2920"; chr7 rmsk exon 113621879 113622500 3617 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "1760"; repStart "-4163"; chr7 rmsk exon 113622517 113622773 1521 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "1029"; repFamily "ERV1"; repLeft "764"; repStart "-5569"; chr7 rmsk exon 113622795 113623426 3563 - . gene_id "MER4_7q31.1a"; transcript_id "MER4_7q31.1a"; locus "MER4_7q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0396"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "38"; repStart "-5911"; ### MER4_7q31.1b ### chr7 rmsk gene 113623476 113625354 . - . gene_id "MER4_7q31.1b"; transcript_id "MER4_7q31.1b"; locus "MER4_7q31.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0397"; model_cov "1229"; model_pct "18.6"; chr7 rmsk exon 113623476 113623854 1318 - . gene_id "MER4_7q31.1b"; transcript_id "MER4_7q31.1b"; locus "MER4_7q31.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0397"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2101"; repStart "-4107"; chr7 rmsk exon 113623876 113624546 2678 - . gene_id "MER4_7q31.1b"; transcript_id "MER4_7q31.1b"; locus "MER4_7q31.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0397"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "1"; repStart "-5758"; chr7 rmsk exon 113624549 113624760 2844 - . gene_id "MER4_7q31.1b"; transcript_id "MER4_7q31.1b"; locus "MER4_7q31.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0397"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "261"; repStart "0"; chr7 rmsk exon 113625127 113625354 2844 - . gene_id "MER4_7q31.1b"; transcript_id "MER4_7q31.1b"; locus "MER4_7q31.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0397"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "3"; repStart "-212"; ### ERV316A3_7q31.1f ### chr7 rmsk gene 113672921 113676680 . + . gene_id "ERV316A3_7q31.1f"; transcript_id "ERV316A3_7q31.1f"; locus "ERV316A3_7q31.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1424"; model_cov "1889"; model_pct "36.1"; chr7 rmsk exon 113672921 113673796 1195 + . gene_id "ERV316A3_7q31.1f"; transcript_id "ERV316A3_7q31.1f"; locus "ERV316A3_7q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1424"; repClass "LTR"; repEnd "3623"; repFamily "ERVL"; repLeft "-1603"; repStart "2731"; chr7 rmsk exon 113674619 113674833 1617 + . gene_id "ERV316A3_7q31.1f"; transcript_id "ERV316A3_7q31.1f"; locus "ERV316A3_7q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1424"; repClass "LTR"; repEnd "4289"; repFamily "ERVL"; repLeft "-937"; repStart "4060"; chr7 rmsk exon 113675193 113675965 1617 + . gene_id "ERV316A3_7q31.1f"; transcript_id "ERV316A3_7q31.1f"; locus "ERV316A3_7q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1424"; repClass "LTR"; repEnd "5058"; repFamily "ERVL"; repLeft "-168"; repStart "4290"; chr7 rmsk exon 113676166 113676680 856 + . gene_id "ERV316A3_7q31.1f"; transcript_id "ERV316A3_7q31.1f"; locus "ERV316A3_7q31.1f"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1424"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL40_7q31.1b ### chr7 rmsk gene 113801998 113805371 . + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0218"; model_cov "1638"; model_pct "29.6"; chr7 rmsk exon 113801998 113802485 1570 + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0218"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 113802500 113802756 1061 + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0218"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-5252"; repStart "19"; chr7 rmsk exon 113802751 113803931 5306 + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0218"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "3431"; chr7 rmsk exon 113804823 113804974 691 + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0218"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "-1"; repStart "5379"; chr7 rmsk exon 113804976 113805371 901 + . gene_id "HERVL40_7q31.1b"; transcript_id "HERVL40_7q31.1b"; locus "HERVL40_7q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0218"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "-173"; repStart "1"; ### HERVL40_7q31.1c ### chr7 rmsk gene 114306150 114312960 . - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0219"; model_cov "3075"; model_pct "55.6"; chr7 rmsk exon 114306150 114306579 1729 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "8"; repStart "-3"; chr7 rmsk exon 114307126 114308960 4310 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "5503"; repFamily "ERVL"; repLeft "3626"; repStart "-27"; chr7 rmsk exon 114309328 114309671 1715 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "3300"; repStart "-1897"; chr7 rmsk exon 114309963 114310504 1715 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "3299"; repFamily "ERVL"; repLeft "2705"; repStart "-2231"; chr7 rmsk exon 114310738 114310805 259 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "1549"; repStart "-3915"; chr7 rmsk exon 114312061 114312258 800 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "920"; repStart "-4405"; chr7 rmsk exon 114312542 114312960 1571 - . gene_id "HERVL40_7q31.1c"; transcript_id "HERVL40_7q31.1c"; locus "HERVL40_7q31.1c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0219"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "14"; repStart "0"; ### HERVW_7q31.1b ### chr7 rmsk gene 114379088 114386320 . - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0166"; model_cov "6347"; model_pct "73.6"; chr7 rmsk exon 114379088 114379414 2448 - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0166"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr7 rmsk exon 114379415 114379706 2386 - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0166"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr7 rmsk exon 114379697 114379735 283 - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0166"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr7 rmsk exon 114379729 114385776 40739 - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0166"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "1"; repStart "-2607"; chr7 rmsk exon 114385777 114386320 4075 - . gene_id "HERVW_7q31.1b"; transcript_id "HERVW_7q31.1b"; locus "HERVW_7q31.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0166"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "246"; repStart "0"; ### HERVL_7q31.1h ### chr7 rmsk gene 114903490 114905954 . - . gene_id "HERVL_7q31.1h"; transcript_id "HERVL_7q31.1h"; locus "HERVL_7q31.1h"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0717"; model_cov "1748"; model_pct "30.9"; chr7 rmsk exon 114903490 114903881 2412 - . gene_id "HERVL_7q31.1h"; transcript_id "HERVL_7q31.1h"; locus "HERVL_7q31.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0717"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr7 rmsk exon 114904205 114905954 13970 - . gene_id "HERVL_7q31.1h"; transcript_id "HERVL_7q31.1h"; locus "HERVL_7q31.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0717"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3906"; repStart "0"; ### ERVLE_7q31.2a ### chr7 rmsk gene 115097279 115097928 . + . gene_id "ERVLE_7q31.2a"; transcript_id "ERVLE_7q31.2a"; locus "ERVLE_7q31.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1900"; model_cov "660"; model_pct "11.6"; chr7 rmsk exon 115097279 115097928 1662 + . gene_id "ERVLE_7q31.2a"; transcript_id "ERVLE_7q31.2a"; locus "ERVLE_7q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1900"; repClass "LTR"; repEnd "4864"; repFamily "ERVL"; repLeft "-803"; repStart "4204"; ### HERVL40_7q31.2 ### chr7 rmsk gene 115131091 115133284 . - . gene_id "HERVL40_7q31.2"; transcript_id "HERVL40_7q31.2"; locus "HERVL40_7q31.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0220"; model_cov "2288"; model_pct "41.4"; chr7 rmsk exon 115131091 115133082 6296 - . gene_id "HERVL40_7q31.2"; transcript_id "HERVL40_7q31.2"; locus "HERVL40_7q31.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0220"; repClass "LTR"; repEnd "4598"; repFamily "ERVL"; repLeft "2522"; repStart "-932"; chr7 rmsk exon 115133082 115133284 717 - . gene_id "HERVL40_7q31.2"; transcript_id "HERVL40_7q31.2"; locus "HERVL40_7q31.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0220"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "1399"; repStart "-3919"; ### HERVL_7q31.2a ### chr7 rmsk gene 115522750 115525751 . - . gene_id "HERVL_7q31.2a"; transcript_id "HERVL_7q31.2a"; locus "HERVL_7q31.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0718"; model_cov "2411"; model_pct "42.6"; chr7 rmsk exon 115522750 115522805 337 - . gene_id "HERVL_7q31.2a"; transcript_id "HERVL_7q31.2a"; locus "HERVL_7q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0718"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr7 rmsk exon 115523089 115523336 1674 - . gene_id "HERVL_7q31.2a"; transcript_id "HERVL_7q31.2a"; locus "HERVL_7q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0718"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "1"; repStart "-188"; chr7 rmsk exon 115523337 115525751 18721 - . gene_id "HERVL_7q31.2a"; transcript_id "HERVL_7q31.2a"; locus "HERVL_7q31.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0718"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3243"; repStart "0"; ### ERV316A3_7q31.2 ### chr7 rmsk gene 115613723 115619231 . - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1425"; model_cov "3028"; model_pct "57.9"; chr7 rmsk exon 115613723 115614097 617 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-8"; repStart "0"; chr7 rmsk exon 115614225 115614352 391 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "4795"; repStart "-308"; chr7 rmsk exon 115614510 115615049 1501 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "4355"; repFamily "ERVL"; repLeft "3812"; repStart "-871"; chr7 rmsk exon 115615050 115615760 1674 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "3309"; repFamily "ERVL"; repLeft "2593"; repStart "-1917"; chr7 rmsk exon 115615980 115616129 3249 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "2480"; repFamily "ERVL"; repLeft "2447"; repStart "-2746"; chr7 rmsk exon 115616486 115616872 3249 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "2446"; repFamily "ERVL"; repLeft "2082"; repStart "-2780"; chr7 rmsk exon 115617236 115617864 3249 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "1492"; repStart "-3145"; chr7 rmsk exon 115618287 115618894 3249 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "1491"; repFamily "ERVL"; repLeft "831"; repStart "-3735"; chr7 rmsk exon 115618913 115618983 320 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "125"; repFamily "ERVL"; repLeft "52"; repStart "-313"; chr7 rmsk exon 115619179 115619231 259 - . gene_id "ERV316A3_7q31.2"; transcript_id "ERV316A3_7q31.2"; locus "ERV316A3_7q31.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1425"; repClass "LTR"; repEnd "58"; repFamily "ERVL"; repLeft "1"; repStart "-380"; ### ERVLE_7q31.2b ### chr7 rmsk gene 115792026 115793197 . - . gene_id "ERVLE_7q31.2b"; transcript_id "ERVLE_7q31.2b"; locus "ERVLE_7q31.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1901"; model_cov "971"; model_pct "17.1"; chr7 rmsk exon 115792026 115792484 1111 - . gene_id "ERVLE_7q31.2b"; transcript_id "ERVLE_7q31.2b"; locus "ERVLE_7q31.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1901"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "4677"; repStart "-494"; chr7 rmsk exon 115792808 115793197 1111 - . gene_id "ERVLE_7q31.2b"; transcript_id "ERVLE_7q31.2b"; locus "ERVLE_7q31.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1901"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "4263"; repStart "-929"; ### ERVLE_7q31.2c ### chr7 rmsk gene 115835051 115836479 . - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1902"; model_cov "1139"; model_pct "20.1"; chr7 rmsk exon 115835051 115835222 416 - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1902"; repClass "LTR"; repEnd "2282"; repFamily "ERVL"; repLeft "2101"; repStart "-3385"; chr7 rmsk exon 115835248 115835504 799 - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1902"; repClass "LTR"; repEnd "2021"; repFamily "ERVL"; repLeft "1741"; repStart "-3646"; chr7 rmsk exon 115835538 115835773 642 - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1902"; repClass "LTR"; repEnd "1667"; repFamily "ERVL"; repLeft "1431"; repStart "-4000"; chr7 rmsk exon 115835813 115836027 527 - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1902"; repClass "LTR"; repEnd "1234"; repFamily "ERVL"; repLeft "1006"; repStart "-4433"; chr7 rmsk exon 115836282 115836479 304 - . gene_id "ERVLE_7q31.2c"; transcript_id "ERVLE_7q31.2c"; locus "ERVLE_7q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1902"; repClass "LTR"; repEnd "723"; repFamily "ERVL"; repLeft "509"; repStart "-4944"; ### HERVH_7q31.2 ### chr7 rmsk gene 116455969 116461136 . + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0657"; model_cov "4890"; model_pct "63.4"; chr7 rmsk exon 116455969 116456075 942 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr7 rmsk exon 116456082 116458904 16248 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "17"; chr7 rmsk exon 116458901 116459048 851 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 116459039 116459542 3300 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr7 rmsk exon 116459545 116460175 3676 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 116460177 116460392 1382 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 116460391 116460742 2063 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 116460743 116461136 2245 + . gene_id "HERVH_7q31.2"; transcript_id "HERVH_7q31.2"; locus "HERVH_7q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0657"; repClass "LTR"; repEnd "408"; repFamily "ERV1"; repLeft "-42"; repStart "1"; ### ERVLE_7q31.2d ### chr7 rmsk gene 116649443 116650205 . - . gene_id "ERVLE_7q31.2d"; transcript_id "ERVLE_7q31.2d"; locus "ERVLE_7q31.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1904"; model_cov "795"; model_pct "14.0"; chr7 rmsk exon 116649443 116650205 1548 - . gene_id "ERVLE_7q31.2d"; transcript_id "ERVLE_7q31.2d"; locus "ERVLE_7q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1904"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4428"; repStart "-444"; ### HERVL_7q31.2b ### chr7 rmsk gene 117101232 117101828 . - . gene_id "HERVL_7q31.2b"; transcript_id "HERVL_7q31.2b"; locus "HERVL_7q31.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0720"; model_cov "602"; model_pct "10.6"; chr7 rmsk exon 117101232 117101828 4484 - . gene_id "HERVL_7q31.2b"; transcript_id "HERVL_7q31.2b"; locus "HERVL_7q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0720"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "3"; repStart "-5049"; ### HERVL32_7q31.2 ### chr7 rmsk gene 117401485 117406116 . - . gene_id "HERVL32_7q31.2"; transcript_id "HERVL32_7q31.2"; locus "HERVL32_7q31.2"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0031"; model_cov "3416"; model_pct "99.9"; chr7 rmsk exon 117401485 117401935 2400 - . gene_id "HERVL32_7q31.2"; transcript_id "HERVL32_7q31.2"; locus "HERVL32_7q31.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0031"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 117401938 117403748 31358 - . gene_id "HERVL32_7q31.2"; transcript_id "HERVL32_7q31.2"; locus "HERVL32_7q31.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0031"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "1616"; repStart "0"; chr7 rmsk exon 117404085 117405699 31358 - . gene_id "HERVL32_7q31.2"; transcript_id "HERVL32_7q31.2"; locus "HERVL32_7q31.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0031"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "1"; repStart "-1803"; chr7 rmsk exon 117405700 117406116 2208 - . gene_id "HERVL32_7q31.2"; transcript_id "HERVL32_7q31.2"; locus "HERVL32_7q31.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0031"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "16"; repStart "0"; ### ERV316A3_7q31.31a ### chr7 rmsk gene 117946424 117950048 . + . gene_id "ERV316A3_7q31.31a"; transcript_id "ERV316A3_7q31.31a"; locus "ERV316A3_7q31.31a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1427"; model_cov "2775"; model_pct "53.1"; chr7 rmsk exon 117946424 117946837 1356 + . gene_id "ERV316A3_7q31.31a"; transcript_id "ERV316A3_7q31.31a"; locus "ERV316A3_7q31.31a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1427"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "3"; chr7 rmsk exon 117946838 117947751 4327 + . gene_id "ERV316A3_7q31.31a"; transcript_id "ERV316A3_7q31.31a"; locus "ERV316A3_7q31.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1427"; repClass "LTR"; repEnd "3359"; repFamily "ERVL"; repLeft "-1867"; repStart "2444"; chr7 rmsk exon 117948053 117949711 4327 + . gene_id "ERV316A3_7q31.31a"; transcript_id "ERV316A3_7q31.31a"; locus "ERV316A3_7q31.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1427"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "-6"; repStart "3360"; chr7 rmsk exon 117949721 117950048 948 + . gene_id "ERV316A3_7q31.31a"; transcript_id "ERV316A3_7q31.31a"; locus "ERV316A3_7q31.31a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1427"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "-101"; repStart "5"; ### HML5_7q31.31 ### chr7 rmsk gene 118114089 118121852 . + . gene_id "HML5_7q31.31"; transcript_id "HML5_7q31.31"; locus "HML5_7q31.31"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0063"; model_cov "6836"; model_pct "100.0"; chr7 rmsk exon 118114089 118114570 3134 + . gene_id "HML5_7q31.31"; transcript_id "HML5_7q31.31"; locus "HML5_7q31.31"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0063"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr7 rmsk exon 118114571 118121364 53334 + . gene_id "HML5_7q31.31"; transcript_id "HML5_7q31.31"; locus "HML5_7q31.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0063"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr7 rmsk exon 118121365 118121852 3160 + . gene_id "HML5_7q31.31"; transcript_id "HML5_7q31.31"; locus "HML5_7q31.31"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0063"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_7q31.31a ### chr7 rmsk gene 118155889 118159374 . - . gene_id "MER4_7q31.31a"; transcript_id "MER4_7q31.31a"; locus "MER4_7q31.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0398"; model_cov "3726"; model_pct "56.5"; chr7 rmsk exon 118155889 118156036 979 - . gene_id "MER4_7q31.31a"; transcript_id "MER4_7q31.31a"; locus "MER4_7q31.31a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0398"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "2"; repStart "-316"; chr7 rmsk exon 118156062 118157037 4081 - . gene_id "MER4_7q31.31a"; transcript_id "MER4_7q31.31a"; locus "MER4_7q31.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0398"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "5612"; repStart "-5"; chr7 rmsk exon 118157035 118159374 10413 - . gene_id "MER4_7q31.31a"; transcript_id "MER4_7q31.31a"; locus "MER4_7q31.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0398"; repClass "LTR"; repEnd "5238"; repFamily "ERV1"; repLeft "2493"; repStart "-1360"; ### MER4_7q31.31b ### chr7 rmsk gene 118159795 118162287 . - . gene_id "MER4_7q31.31b"; transcript_id "MER4_7q31.31b"; locus "MER4_7q31.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0399"; model_cov "2491"; model_pct "37.8"; chr7 rmsk exon 118159795 118161916 10413 - . gene_id "MER4_7q31.31b"; transcript_id "MER4_7q31.31b"; locus "MER4_7q31.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0399"; repClass "LTR"; repEnd "5238"; repFamily "ERV1"; repLeft "2747"; repStart "-1360"; chr7 rmsk exon 118161920 118162287 2423 - . gene_id "MER4_7q31.31b"; transcript_id "MER4_7q31.31b"; locus "MER4_7q31.31b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0399"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "69"; repStart "0"; ### ERV316A3_7q31.31b ### chr7 rmsk gene 118368793 118372859 . - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1429"; model_cov "2805"; model_pct "53.7"; chr7 rmsk exon 118368793 118369655 2377 - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1429"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "2027"; repStart "-2320"; chr7 rmsk exon 118369844 118370372 915 - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1429"; repClass "LTR"; repEnd "2435"; repFamily "ERVL"; repLeft "1904"; repStart "-2791"; chr7 rmsk exon 118370758 118371009 522 - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1429"; repClass "LTR"; repEnd "1678"; repFamily "ERVL"; repLeft "1415"; repStart "-3548"; chr7 rmsk exon 118371391 118372489 1985 - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1429"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "10"; repStart "-4084"; chr7 rmsk exon 118372494 118372859 795 - . gene_id "ERV316A3_7q31.31b"; transcript_id "ERV316A3_7q31.31b"; locus "ERV316A3_7q31.31b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1429"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "27"; repStart "0"; ### ERV316A3_7q31.31c ### chr7 rmsk gene 118462895 118463871 . + . gene_id "ERV316A3_7q31.31c"; transcript_id "ERV316A3_7q31.31c"; locus "ERV316A3_7q31.31c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1430"; model_cov "980"; model_pct "18.8"; chr7 rmsk exon 118462895 118463871 888 + . gene_id "ERV316A3_7q31.31c"; transcript_id "ERV316A3_7q31.31c"; locus "ERV316A3_7q31.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1430"; repClass "LTR"; repEnd "4882"; repFamily "ERVL"; repLeft "-344"; repStart "3902"; ### ERV316A3_7q31.31d ### chr7 rmsk gene 118697863 118700223 . - . gene_id "ERV316A3_7q31.31d"; transcript_id "ERV316A3_7q31.31d"; locus "ERV316A3_7q31.31d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1432"; model_cov "1731"; model_pct "33.1"; chr7 rmsk exon 118697863 118699463 1886 - . gene_id "ERV316A3_7q31.31d"; transcript_id "ERV316A3_7q31.31d"; locus "ERV316A3_7q31.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1432"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "2020"; repStart "-1566"; chr7 rmsk exon 118700130 118700223 272 - . gene_id "ERV316A3_7q31.31d"; transcript_id "ERV316A3_7q31.31d"; locus "ERV316A3_7q31.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1432"; repClass "LTR"; repEnd "1425"; repFamily "ERVL"; repLeft "1334"; repStart "-3801"; ### ERVLE_7q31.31a ### chr7 rmsk gene 118701315 118704454 . + . gene_id "ERVLE_7q31.31a"; transcript_id "ERVLE_7q31.31a"; locus "ERVLE_7q31.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1906"; model_cov "1993"; model_pct "35.2"; chr7 rmsk exon 118701315 118702374 1425 + . gene_id "ERVLE_7q31.31a"; transcript_id "ERVLE_7q31.31a"; locus "ERVLE_7q31.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1906"; repClass "LTR"; repEnd "3227"; repFamily "ERVL"; repLeft "-2440"; repStart "2171"; chr7 rmsk exon 118702765 118703117 669 + . gene_id "ERVLE_7q31.31a"; transcript_id "ERVLE_7q31.31a"; locus "ERVLE_7q31.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1906"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "-2378"; repStart "2918"; chr7 rmsk exon 118703531 118703761 2008 + . gene_id "ERVLE_7q31.31a"; transcript_id "ERVLE_7q31.31a"; locus "ERVLE_7q31.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1906"; repClass "LTR"; repEnd "4173"; repFamily "ERVL"; repLeft "-1494"; repStart "3964"; chr7 rmsk exon 118704102 118704454 2008 + . gene_id "ERVLE_7q31.31a"; transcript_id "ERVLE_7q31.31a"; locus "ERVLE_7q31.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1906"; repClass "LTR"; repEnd "4531"; repFamily "ERVL"; repLeft "-1136"; repStart "4174"; ### HERVP71A_7q31.31 ### chr7 rmsk gene 118869214 118871689 . + . gene_id "HERVP71A_7q31.31"; transcript_id "HERVP71A_7q31.31"; locus "HERVP71A_7q31.31"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0040"; model_cov "1654"; model_pct "21.8"; chr7 rmsk exon 118869214 118869762 4580 + . gene_id "HERVP71A_7q31.31"; transcript_id "HERVP71A_7q31.31"; locus "HERVP71A_7q31.31"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0040"; repClass "LTR"; repEnd "544"; repFamily "ERV1"; repLeft "-66"; repStart "1"; chr7 rmsk exon 118870062 118870133 4580 + . gene_id "HERVP71A_7q31.31"; transcript_id "HERVP71A_7q31.31"; locus "HERVP71A_7q31.31"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0040"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "545"; chr7 rmsk exon 118870134 118871689 7287 + . gene_id "HERVP71A_7q31.31"; transcript_id "HERVP71A_7q31.31"; locus "HERVP71A_7q31.31"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0040"; repClass "LTR"; repEnd "1656"; repFamily "ERV1"; repLeft "-5934"; repStart "2"; ### MER4_7q31.31c ### chr7 rmsk gene 119054496 119058521 . - . gene_id "MER4_7q31.31c"; transcript_id "MER4_7q31.31c"; locus "MER4_7q31.31c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0400"; model_cov "3806"; model_pct "57.7"; chr7 rmsk exon 119054496 119054940 2929 - . gene_id "MER4_7q31.31c"; transcript_id "MER4_7q31.31c"; locus "MER4_7q31.31c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0400"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 119054942 119057635 13527 - . gene_id "MER4_7q31.31c"; transcript_id "MER4_7q31.31c"; locus "MER4_7q31.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0400"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "3837"; repStart "0"; chr7 rmsk exon 119057635 119058521 6866 - . gene_id "MER4_7q31.31c"; transcript_id "MER4_7q31.31c"; locus "MER4_7q31.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0400"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2636"; repStart "-2917"; ### MER4_7q31.31d ### chr7 rmsk gene 119058696 119061415 . - . gene_id "MER4_7q31.31d"; transcript_id "MER4_7q31.31d"; locus "MER4_7q31.31d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0401"; model_cov "2634"; model_pct "39.9"; chr7 rmsk exon 119058696 119060925 6866 - . gene_id "MER4_7q31.31d"; transcript_id "MER4_7q31.31d"; locus "MER4_7q31.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0401"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "1047"; repStart "-2917"; chr7 rmsk exon 119060929 119061415 3094 - . gene_id "MER4_7q31.31d"; transcript_id "MER4_7q31.31d"; locus "MER4_7q31.31d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0401"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7q31.31b ### chr7 rmsk gene 119180475 119181548 . - . gene_id "ERVLE_7q31.31b"; transcript_id "ERVLE_7q31.31b"; locus "ERVLE_7q31.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1907"; model_cov "930"; model_pct "16.4"; chr7 rmsk exon 119180475 119180889 541 - . gene_id "ERVLE_7q31.31b"; transcript_id "ERVLE_7q31.31b"; locus "ERVLE_7q31.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1907"; repClass "LTR"; repEnd "4851"; repFamily "ERVL"; repLeft "4445"; repStart "-816"; chr7 rmsk exon 119181009 119181548 701 - . gene_id "ERVLE_7q31.31b"; transcript_id "ERVLE_7q31.31b"; locus "ERVLE_7q31.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1907"; repClass "LTR"; repEnd "3703"; repFamily "ERVL"; repLeft "3179"; repStart "-1964"; ### HERVL_7q31.31 ### chr7 rmsk gene 119184157 119191167 . + . gene_id "HERVL_7q31.31"; transcript_id "HERVL_7q31.31"; locus "HERVL_7q31.31"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0721"; model_cov "5655"; model_pct "100.0"; chr7 rmsk exon 119184157 119184707 2071 + . gene_id "HERVL_7q31.31"; transcript_id "HERVL_7q31.31"; locus "HERVL_7q31.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0721"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr7 rmsk exon 119184708 119188706 27878 + . gene_id "HERVL_7q31.31"; transcript_id "HERVL_7q31.31"; locus "HERVL_7q31.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0721"; repClass "LTR"; repEnd "3972"; repFamily "ERVL"; repLeft "-1682"; repStart "1"; chr7 rmsk exon 119188931 119190622 12298 + . gene_id "HERVL_7q31.31"; transcript_id "HERVL_7q31.31"; locus "HERVL_7q31.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0721"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3970"; chr7 rmsk exon 119190623 119191167 1970 + . gene_id "HERVL_7q31.31"; transcript_id "HERVL_7q31.31"; locus "HERVL_7q31.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0721"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLB4_7q31.31a ### chr7 rmsk gene 119320943 119321665 . - . gene_id "ERVLB4_7q31.31a"; transcript_id "ERVLB4_7q31.31a"; locus "ERVLB4_7q31.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0844"; model_cov "835"; model_pct "14.6"; chr7 rmsk exon 119320943 119321665 2114 - . gene_id "ERVLB4_7q31.31a"; transcript_id "ERVLB4_7q31.31a"; locus "ERVLB4_7q31.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0844"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "4437"; repStart "-442"; ### ERVLB4_7q31.31b ### chr7 rmsk gene 119364769 119365786 . - . gene_id "ERVLB4_7q31.31b"; transcript_id "ERVLB4_7q31.31b"; locus "ERVLB4_7q31.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0845"; model_cov "955"; model_pct "16.7"; chr7 rmsk exon 119364769 119364893 571 - . gene_id "ERVLB4_7q31.31b"; transcript_id "ERVLB4_7q31.31b"; locus "ERVLB4_7q31.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0845"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "2038"; repStart "-3547"; chr7 rmsk exon 119364960 119365786 2492 - . gene_id "ERVLB4_7q31.31b"; transcript_id "ERVLB4_7q31.31b"; locus "ERVLB4_7q31.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0845"; repClass "LTR"; repEnd "2031"; repFamily "ERVL"; repLeft "1205"; repStart "-3683"; ### HERVL40_7q31.31 ### chr7 rmsk gene 119387930 119390657 . - . gene_id "HERVL40_7q31.31"; transcript_id "HERVL40_7q31.31"; locus "HERVL40_7q31.31"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0221"; model_cov "714"; model_pct "12.9"; chr7 rmsk exon 119387930 119388437 632 - . gene_id "HERVL40_7q31.31"; transcript_id "HERVL40_7q31.31"; locus "HERVL40_7q31.31"; repName "LTR40A1"; geneRegion "ltr"; locid "HERVL40-int_0221"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "25"; repStart "-15"; chr7 rmsk exon 119388496 119388701 375 - . gene_id "HERVL40_7q31.31"; transcript_id "HERVL40_7q31.31"; locus "HERVL40_7q31.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0221"; repClass "LTR"; repEnd "5495"; repFamily "ERVL"; repLeft "5279"; repStart "-35"; chr7 rmsk exon 119390056 119390366 538 - . gene_id "HERVL40_7q31.31"; transcript_id "HERVL40_7q31.31"; locus "HERVL40_7q31.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0221"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "3983"; repStart "-1237"; chr7 rmsk exon 119390479 119390657 256 - . gene_id "HERVL40_7q31.31"; transcript_id "HERVL40_7q31.31"; locus "HERVL40_7q31.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0221"; repClass "LTR"; repEnd "3773"; repFamily "ERVL"; repLeft "3585"; repStart "-1757"; ### HERVW_7q31.31 ### chr7 rmsk gene 119566189 119570829 . + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0168"; model_cov "4332"; model_pct "50.2"; chr7 rmsk exon 119566189 119567161 5946 + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0168"; repClass "LTR"; repEnd "1015"; repFamily "ERV1"; repLeft "-7611"; repStart "61"; chr7 rmsk exon 119567147 119570200 25557 + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0168"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2966"; chr7 rmsk exon 119570194 119570228 252 + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0168"; repClass "LTR"; repEnd "7544"; repFamily "ERV1"; repLeft "-1082"; repStart "7510"; chr7 rmsk exon 119570223 119570512 2395 + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0168"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr7 rmsk exon 119570513 119570829 2472 + . gene_id "HERVW_7q31.31"; transcript_id "HERVW_7q31.31"; locus "HERVW_7q31.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0168"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLB4_7q31.31c ### chr7 rmsk gene 119596561 119597181 . + . gene_id "ERVLB4_7q31.31c"; transcript_id "ERVLB4_7q31.31c"; locus "ERVLB4_7q31.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0846"; model_cov "598"; model_pct "10.5"; chr7 rmsk exon 119596561 119597040 493 + . gene_id "ERVLB4_7q31.31c"; transcript_id "ERVLB4_7q31.31c"; locus "ERVLB4_7q31.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0846"; repClass "LTR"; repEnd "2261"; repFamily "ERVL"; repLeft "-3453"; repStart "1755"; chr7 rmsk exon 119597070 119597181 493 + . gene_id "ERVLB4_7q31.31c"; transcript_id "ERVLB4_7q31.31c"; locus "ERVLB4_7q31.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0846"; repClass "LTR"; repEnd "2354"; repFamily "ERVL"; repLeft "-3360"; repStart "2262"; ### HERVH_7q31.31a ### chr7 rmsk gene 120009179 120014835 . + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0658"; model_cov "4705"; model_pct "61.0"; chr7 rmsk exon 120009179 120009629 3276 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 120009632 120010006 2615 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "-7338"; repStart "1"; chr7 rmsk exon 120010068 120012295 14486 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr7 rmsk exon 120012275 120013123 5637 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3140"; chr7 rmsk exon 120013123 120013789 4300 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chr7 rmsk exon 120013791 120014002 1366 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 120014001 120014391 2378 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 120014392 120014835 3186 + . gene_id "HERVH_7q31.31a"; transcript_id "HERVH_7q31.31a"; locus "HERVH_7q31.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0658"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV3_7q31.31 ### chr7 rmsk gene 120052771 120061151 . - . gene_id "HERV3_7q31.31"; transcript_id "HERV3_7q31.31"; locus "HERV3_7q31.31"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0031"; model_cov "8187"; model_pct "97.2"; chr7 rmsk exon 120052771 120053314 1573 - . gene_id "HERV3_7q31.31"; transcript_id "HERV3_7q31.31"; locus "HERV3_7q31.31"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0031"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "59"; repStart "0"; chr7 rmsk exon 120053317 120054889 10249 - . gene_id "HERV3_7q31.31"; transcript_id "HERV3_7q31.31"; locus "HERV3_7q31.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0031"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "6844"; repStart "0"; chr7 rmsk exon 120054966 120061151 40258 - . gene_id "HERV3_7q31.31"; transcript_id "HERV3_7q31.31"; locus "HERV3_7q31.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0031"; repClass "LTR"; repEnd "6649"; repFamily "ERV1"; repLeft "44"; repStart "-1777"; ### PABLA_7q31.31 ### chr7 rmsk gene 120117365 120118544 . + . gene_id "PABLA_7q31.31"; transcript_id "PABLA_7q31.31"; locus "PABLA_7q31.31"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0077"; model_cov "1600"; model_pct "31.9"; chr7 rmsk exon 120117365 120118544 5349 + . gene_id "PABLA_7q31.31"; transcript_id "PABLA_7q31.31"; locus "PABLA_7q31.31"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0077"; repClass "LTR"; repEnd "3012"; repFamily "ERV1"; repLeft "-2003"; repStart "1412"; ### ERVLE_7q31.31c ### chr7 rmsk gene 120186197 120188433 . + . gene_id "ERVLE_7q31.31c"; transcript_id "ERVLE_7q31.31c"; locus "ERVLE_7q31.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1908"; model_cov "1367"; model_pct "24.1"; chr7 rmsk exon 120186197 120186573 697 + . gene_id "ERVLE_7q31.31c"; transcript_id "ERVLE_7q31.31c"; locus "ERVLE_7q31.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1908"; repClass "LTR"; repEnd "2768"; repFamily "ERVL"; repLeft "-2899"; repStart "2390"; chr7 rmsk exon 120187422 120188433 638 + . gene_id "ERVLE_7q31.31c"; transcript_id "ERVLE_7q31.31c"; locus "ERVLE_7q31.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1908"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "-563"; repStart "4115"; ### ERV316A3_7q31.31e ### chr7 rmsk gene 120229043 120234206 . + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1435"; model_cov "4003"; model_pct "76.6"; chr7 rmsk exon 120229043 120229434 1205 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-7"; repStart "20"; chr7 rmsk exon 120229661 120229879 355 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "712"; repFamily "ERVL"; repLeft "-4514"; repStart "461"; chr7 rmsk exon 120229885 120230606 1686 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "1185"; repFamily "ERVL"; repLeft "-4041"; repStart "420"; chr7 rmsk exon 120230913 120231320 1686 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-3651"; repStart "1186"; chr7 rmsk exon 120231651 120231969 1686 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "1885"; repFamily "ERVL"; repLeft "-3341"; repStart "1583"; chr7 rmsk exon 120231965 120232856 2659 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "2569"; repFamily "ERVL"; repLeft "-2657"; repStart "1608"; chr7 rmsk exon 120232919 120234048 2659 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1436"; repStart "2570"; chr7 rmsk exon 120234087 120234206 2659 + . gene_id "ERV316A3_7q31.31e"; transcript_id "ERV316A3_7q31.31e"; locus "ERV316A3_7q31.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1435"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "-1029"; repStart "4082"; ### ERVLB4_7q31.31d ### chr7 rmsk gene 120765254 120768455 . + . gene_id "ERVLB4_7q31.31d"; transcript_id "ERVLB4_7q31.31d"; locus "ERVLB4_7q31.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0847"; model_cov "1317"; model_pct "23.0"; chr7 rmsk exon 120765254 120765342 379 + . gene_id "ERVLB4_7q31.31d"; transcript_id "ERVLB4_7q31.31d"; locus "ERVLB4_7q31.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0847"; repClass "LTR"; repEnd "1250"; repFamily "ERVL"; repLeft "-4464"; repStart "1161"; chr7 rmsk exon 120766485 120766830 2031 + . gene_id "ERVLB4_7q31.31d"; transcript_id "ERVLB4_7q31.31d"; locus "ERVLB4_7q31.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0847"; repClass "LTR"; repEnd "1881"; repFamily "ERVL"; repLeft "-3833"; repStart "1519"; chr7 rmsk exon 120767604 120768455 2031 + . gene_id "ERVLB4_7q31.31d"; transcript_id "ERVLB4_7q31.31d"; locus "ERVLB4_7q31.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0847"; repClass "LTR"; repEnd "2748"; repFamily "ERVL"; repLeft "-2966"; repStart "1882"; ### HERVH_7q31.31b ### chr7 rmsk gene 120776623 120782885 . - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0659"; model_cov "5630"; model_pct "73.0"; chr7 rmsk exon 120776623 120777024 2618 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 120777025 120777403 2397 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 120777402 120777629 1382 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr7 rmsk exon 120777620 120779329 8051 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4559"; repStart "-1290"; chr7 rmsk exon 120779329 120779478 951 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 120779458 120782483 19619 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 120782486 120782885 2621 - . gene_id "HERVH_7q31.31b"; transcript_id "HERVH_7q31.31b"; locus "HERVH_7q31.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0659"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HERVH_7q31.31c ### chr7 rmsk gene 120885700 120891391 . - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0660"; model_cov "4919"; model_pct "63.8"; chr7 rmsk exon 120885700 120886068 2368 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 120886069 120886453 2314 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7314"; repStart "0"; chr7 rmsk exon 120886446 120886661 1369 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 120886666 120887325 4467 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr7 rmsk exon 120887328 120887816 3177 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr7 rmsk exon 120887816 120887985 877 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr7 rmsk exon 120887958 120890981 19689 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 120890984 120891391 2857 - . gene_id "HERVH_7q31.31c"; transcript_id "HERVH_7q31.31c"; locus "HERVH_7q31.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0660"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_7q31.31d ### chr7 rmsk gene 120934939 120938934 . - . gene_id "ERVLE_7q31.31d"; transcript_id "ERVLE_7q31.31d"; locus "ERVLE_7q31.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1909"; model_cov "1399"; model_pct "24.7"; chr7 rmsk exon 120934939 120935161 624 - . gene_id "ERVLE_7q31.31d"; transcript_id "ERVLE_7q31.31d"; locus "ERVLE_7q31.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1909"; repClass "LTR"; repEnd "4131"; repFamily "ERVL"; repLeft "3888"; repStart "-1536"; chr7 rmsk exon 120936073 120936413 983 - . gene_id "ERVLE_7q31.31d"; transcript_id "ERVLE_7q31.31d"; locus "ERVLE_7q31.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1909"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "2315"; repStart "-2990"; chr7 rmsk exon 120938273 120938934 668 - . gene_id "ERVLE_7q31.31d"; transcript_id "ERVLE_7q31.31d"; locus "ERVLE_7q31.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1909"; repClass "LTR"; repEnd "1525"; repFamily "ERVL"; repLeft "731"; repStart "-4142"; ### HERVH_7q31.31d ### chr7 rmsk gene 121315380 121321293 . + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0661"; model_cov "4901"; model_pct "63.5"; chr7 rmsk exon 121315380 121315819 3710 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 121315820 121318970 14628 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr7 rmsk exon 121318950 121319099 865 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 121319104 121319594 3207 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr7 rmsk exon 121319597 121320259 4178 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 121320261 121320476 1347 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 121320477 121320854 2429 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr7 rmsk exon 121320855 121321293 3673 + . gene_id "HERVH_7q31.31d"; transcript_id "HERVH_7q31.31d"; locus "HERVH_7q31.31d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0661"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_7q31.32a ### chr7 rmsk gene 121563649 121569668 . - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0662"; model_cov "5263"; model_pct "68.2"; chr7 rmsk exon 121563649 121564047 2605 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 121564048 121564426 2356 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 121564425 121564640 1416 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 121564642 121565304 4421 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 121565307 121569267 26612 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr7 rmsk exon 121569270 121569668 2585 - . gene_id "HERVH_7q31.32a"; transcript_id "HERVH_7q31.32a"; locus "HERVH_7q31.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0662"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_7q31.32a ### chr7 rmsk gene 121732404 121733291 . - . gene_id "ERV316A3_7q31.32a"; transcript_id "ERV316A3_7q31.32a"; locus "ERV316A3_7q31.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1438"; model_cov "526"; model_pct "10.1"; chr7 rmsk exon 121732404 121732686 1096 - . gene_id "ERV316A3_7q31.32a"; transcript_id "ERV316A3_7q31.32a"; locus "ERV316A3_7q31.32a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1438"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "56"; repStart "-99"; chr7 rmsk exon 121732697 121733070 1290 - . gene_id "ERV316A3_7q31.32a"; transcript_id "ERV316A3_7q31.32a"; locus "ERV316A3_7q31.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1438"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4845"; repStart "0"; chr7 rmsk exon 121733160 121733291 418 - . gene_id "ERV316A3_7q31.32a"; transcript_id "ERV316A3_7q31.32a"; locus "ERV316A3_7q31.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1438"; repClass "LTR"; repEnd "4734"; repFamily "ERVL"; repLeft "4589"; repStart "-492"; ### HERVW_7q31.32 ### chr7 rmsk gene 122171655 122177595 . + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0169"; model_cov "4919"; model_pct "57.0"; chr7 rmsk exon 122171655 122172796 20874 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "-6583"; repStart "905"; chr7 rmsk exon 122173102 122174775 20874 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2044"; chr7 rmsk exon 122174755 122176494 13751 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "5405"; chr7 rmsk exon 122176491 122176529 285 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr7 rmsk exon 122176520 122176812 2189 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr7 rmsk exon 122176813 122177595 5235 + . gene_id "HERVW_7q31.32"; transcript_id "HERVW_7q31.32"; locus "HERVW_7q31.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0169"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_7q31.32 ### chr7 rmsk gene 122202306 122209105 . - . gene_id "HERVL_7q31.32"; transcript_id "HERVL_7q31.32"; locus "HERVL_7q31.32"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0723"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 122202306 122202358 229 - . gene_id "HERVL_7q31.32"; transcript_id "HERVL_7q31.32"; locus "HERVL_7q31.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0723"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "399"; repStart "0"; chr7 rmsk exon 122202629 122203019 2761 - . gene_id "HERVL_7q31.32"; transcript_id "HERVL_7q31.32"; locus "HERVL_7q31.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0723"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr7 rmsk exon 122203020 122208641 41014 - . gene_id "HERVL_7q31.32"; transcript_id "HERVL_7q31.32"; locus "HERVL_7q31.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0723"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 122208642 122209105 2993 - . gene_id "HERVL_7q31.32"; transcript_id "HERVL_7q31.32"; locus "HERVL_7q31.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0723"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_7q31.32a ### chr7 rmsk gene 122211204 122212866 . - . gene_id "ERVLE_7q31.32a"; transcript_id "ERVLE_7q31.32a"; locus "ERVLE_7q31.32a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1910"; model_cov "763"; model_pct "13.5"; chr7 rmsk exon 122211204 122211968 3227 - . gene_id "ERVLE_7q31.32a"; transcript_id "ERVLE_7q31.32a"; locus "ERVLE_7q31.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1910"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "52"; repStart "-4852"; chr7 rmsk exon 122212045 122212087 264 - . gene_id "ERVLE_7q31.32a"; transcript_id "ERVLE_7q31.32a"; locus "ERVLE_7q31.32a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1910"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "613"; repStart "-8"; chr7 rmsk exon 122212179 122212190 857 - . gene_id "ERVLE_7q31.32a"; transcript_id "ERVLE_7q31.32a"; locus "ERVLE_7q31.32a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1910"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "596"; repStart "-55"; chr7 rmsk exon 122212497 122212866 857 - . gene_id "ERVLE_7q31.32a"; transcript_id "ERVLE_7q31.32a"; locus "ERVLE_7q31.32a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1910"; repClass "LTR"; repEnd "595"; repFamily "ERVL"; repLeft "189"; repStart "-68"; ### ERVLE_7q31.32b ### chr7 rmsk gene 122212888 122214885 . + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1911"; model_cov "1216"; model_pct "21.5"; chr7 rmsk exon 122212888 122213178 1119 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "4590"; repFamily "ERVL"; repLeft "-1077"; repStart "4297"; chr7 rmsk exon 122213331 122213803 1572 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-446"; repStart "4739"; chr7 rmsk exon 122213941 122214321 1035 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5226"; chr7 rmsk exon 122214332 122214418 379 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "103"; repFamily "ERVL"; repLeft "-560"; repStart "19"; chr7 rmsk exon 122214613 122214753 485 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "-58"; repStart "470"; chr7 rmsk exon 122214821 122214885 310 + . gene_id "ERVLE_7q31.32b"; transcript_id "ERVLE_7q31.32b"; locus "ERVLE_7q31.32b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1911"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "593"; ### ERVLE_7q31.32c ### chr7 rmsk gene 122287497 122291632 . - . gene_id "ERVLE_7q31.32c"; transcript_id "ERVLE_7q31.32c"; locus "ERVLE_7q31.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1912"; model_cov "817"; model_pct "14.4"; chr7 rmsk exon 122287497 122287909 1023 - . gene_id "ERVLE_7q31.32c"; transcript_id "ERVLE_7q31.32c"; locus "ERVLE_7q31.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1912"; repClass "LTR"; repEnd "4021"; repFamily "ERVL"; repLeft "3604"; repStart "-1646"; chr7 rmsk exon 122289851 122289962 268 - . gene_id "ERVLE_7q31.32c"; transcript_id "ERVLE_7q31.32c"; locus "ERVLE_7q31.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1912"; repClass "LTR"; repEnd "3608"; repFamily "ERVL"; repLeft "3493"; repStart "-2059"; chr7 rmsk exon 122291349 122291632 925 - . gene_id "ERVLE_7q31.32c"; transcript_id "ERVLE_7q31.32c"; locus "ERVLE_7q31.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1912"; repClass "LTR"; repEnd "2583"; repFamily "ERVL"; repLeft "2298"; repStart "-3084"; ### HERVL18_7q31.32 ### chr7 rmsk gene 122688404 122693122 . - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0087"; model_cov "3766"; model_pct "62.3"; chr7 rmsk exon 122688404 122688663 1392 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "323"; repStart "0"; chr7 rmsk exon 122688660 122688847 673 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "1"; repStart "-416"; chr7 rmsk exon 122689003 122690636 9874 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4394"; repStart "0"; chr7 rmsk exon 122690639 122691535 4119 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr7 rmsk exon 122691535 122691807 1291 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2120"; repStart "-3595"; chr7 rmsk exon 122691809 122692153 995 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "1809"; repFamily "ERVL"; repLeft "1401"; repStart "-4238"; chr7 rmsk exon 122692158 122692199 264 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "958"; repFamily "ERVL"; repLeft "917"; repStart "-5089"; chr7 rmsk exon 122692195 122692372 763 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "494"; repStart "-5381"; chr7 rmsk exon 122692359 122692659 1497 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "1"; repStart "-5745"; chr7 rmsk exon 122692691 122693122 1743 - . gene_id "HERVL18_7q31.32"; transcript_id "HERVL18_7q31.32"; locus "HERVL18_7q31.32"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0087"; repClass "LTR"; repEnd "613"; repFamily "ERVL"; repLeft "1"; repStart "-1"; ### HERVH_7q31.32b ### chr7 rmsk gene 122816729 122822998 . + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0663"; model_cov "5069"; model_pct "65.7"; chr7 rmsk exon 122816729 122817176 3354 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 122817179 122820468 19907 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr7 rmsk exon 122820459 122820542 3265 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "3574"; repFamily "ERV1"; repLeft "-4139"; repStart "3492"; chr7 rmsk exon 122820859 122821289 3265 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3575"; chr7 rmsk exon 122821286 122821955 4351 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4478"; chr7 rmsk exon 122821957 122822172 1379 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 122822171 122822550 2478 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 122822551 122822998 3419 + . gene_id "HERVH_7q31.32b"; transcript_id "HERVH_7q31.32b"; locus "HERVH_7q31.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0663"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_7q31.32d ### chr7 rmsk gene 122926119 122931682 . + . gene_id "ERVLE_7q31.32d"; transcript_id "ERVLE_7q31.32d"; locus "ERVLE_7q31.32d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1913"; model_cov "2231"; model_pct "39.4"; chr7 rmsk exon 122926119 122926406 331 + . gene_id "ERVLE_7q31.32d"; transcript_id "ERVLE_7q31.32d"; locus "ERVLE_7q31.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1913"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-5264"; repStart "106"; chr7 rmsk exon 122926858 122926976 332 + . gene_id "ERVLE_7q31.32d"; transcript_id "ERVLE_7q31.32d"; locus "ERVLE_7q31.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1913"; repClass "LTR"; repEnd "1653"; repFamily "ERVL"; repLeft "-4014"; repStart "1536"; chr7 rmsk exon 122927617 122929120 3335 + . gene_id "ERVLE_7q31.32d"; transcript_id "ERVLE_7q31.32d"; locus "ERVLE_7q31.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1913"; repClass "LTR"; repEnd "3303"; repFamily "ERVL"; repLeft "-2364"; repStart "1790"; chr7 rmsk exon 122931386 122931682 754 + . gene_id "ERVLE_7q31.32d"; transcript_id "ERVLE_7q31.32d"; locus "ERVLE_7q31.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1913"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "-385"; repStart "4978"; ### ERVLE_7q31.32e ### chr7 rmsk gene 122956597 122961560 . - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1914"; model_cov "4206"; model_pct "74.2"; chr7 rmsk exon 122956597 122959090 6602 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "5030"; repFamily "ERVL"; repLeft "2341"; repStart "-637"; chr7 rmsk exon 122959092 122959683 2255 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "2174"; repFamily "ERVL"; repLeft "1575"; repStart "-3493"; chr7 rmsk exon 122959877 122960082 902 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "1487"; repFamily "ERVL"; repLeft "1282"; repStart "-4180"; chr7 rmsk exon 122960644 122960781 469 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "818"; repStart "-4706"; chr7 rmsk exon 122960820 122961253 1587 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "749"; repFamily "ERVL"; repLeft "309"; repStart "-4918"; chr7 rmsk exon 122961457 122961560 325 - . gene_id "ERVLE_7q31.32e"; transcript_id "ERVLE_7q31.32e"; locus "ERVLE_7q31.32e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1914"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "166"; repStart "-5371"; ### ERV316A3_7q31.32b ### chr7 rmsk gene 123008258 123011170 . + . gene_id "ERV316A3_7q31.32b"; transcript_id "ERV316A3_7q31.32b"; locus "ERV316A3_7q31.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1439"; model_cov "1420"; model_pct "27.2"; chr7 rmsk exon 123008258 123008698 1604 + . gene_id "ERV316A3_7q31.32b"; transcript_id "ERV316A3_7q31.32b"; locus "ERV316A3_7q31.32b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1439"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-15"; repStart "9"; chr7 rmsk exon 123008713 123009516 1809 + . gene_id "ERV316A3_7q31.32b"; transcript_id "ERV316A3_7q31.32b"; locus "ERV316A3_7q31.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1439"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "-4406"; repStart "7"; chr7 rmsk exon 123010564 123011170 1553 + . gene_id "ERV316A3_7q31.32b"; transcript_id "ERV316A3_7q31.32b"; locus "ERV316A3_7q31.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1439"; repClass "LTR"; repEnd "4840"; repFamily "ERVL"; repLeft "-386"; repStart "4233"; ### ERV316A3_7q31.32c ### chr7 rmsk gene 123031956 123036582 . + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1440"; model_cov "2853"; model_pct "54.6"; chr7 rmsk exon 123031956 123032366 1152 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "1550"; repFamily "ERVL"; repLeft "-3676"; repStart "1104"; chr7 rmsk exon 123032367 123032695 6472 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2815"; chr7 rmsk exon 123033057 123033519 6472 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "3613"; repFamily "ERVL"; repLeft "-1613"; repStart "3137"; chr7 rmsk exon 123033942 123035007 6472 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "4681"; repFamily "ERVL"; repLeft "-545"; repStart "3614"; chr7 rmsk exon 123035322 123035827 6472 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4682"; chr7 rmsk exon 123035829 123036109 1257 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-167"; repStart "1"; chr7 rmsk exon 123036422 123036582 1257 + . gene_id "ERV316A3_7q31.32c"; transcript_id "ERV316A3_7q31.32c"; locus "ERV316A3_7q31.32c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1440"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "296"; ### ERVLE_7q31.32f ### chr7 rmsk gene 123436464 123439051 . - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1915"; model_cov "1875"; model_pct "33.1"; chr7 rmsk exon 123436464 123436691 644 - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1915"; repClass "LTR"; repEnd "4864"; repFamily "ERVL"; repLeft "4633"; repStart "-803"; chr7 rmsk exon 123436690 123437082 3429 - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1915"; repClass "LTR"; repEnd "4701"; repFamily "ERVL"; repLeft "4329"; repStart "-966"; chr7 rmsk exon 123437407 123438217 3429 - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1915"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "3514"; repStart "-1339"; chr7 rmsk exon 123438504 123438781 3429 - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1915"; repClass "LTR"; repEnd "3513"; repFamily "ERVL"; repLeft "3238"; repStart "-2154"; chr7 rmsk exon 123438869 123439051 676 - . gene_id "ERVLE_7q31.32f"; transcript_id "ERVLE_7q31.32f"; locus "ERVLE_7q31.32f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1915"; repClass "LTR"; repEnd "3001"; repFamily "ERVL"; repLeft "2818"; repStart "-2666"; ### ERVLE_7q31.32g ### chr7 rmsk gene 123440024 123442393 . - . gene_id "ERVLE_7q31.32g"; transcript_id "ERVLE_7q31.32g"; locus "ERVLE_7q31.32g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1916"; model_cov "1760"; model_pct "31.1"; chr7 rmsk exon 123440024 123440401 1003 - . gene_id "ERVLE_7q31.32g"; transcript_id "ERVLE_7q31.32g"; locus "ERVLE_7q31.32g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1916"; repClass "LTR"; repEnd "5347"; repFamily "ERVL"; repLeft "4846"; repStart "-320"; chr7 rmsk exon 123440376 123441560 2750 - . gene_id "ERVLE_7q31.32g"; transcript_id "ERVLE_7q31.32g"; locus "ERVLE_7q31.32g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1916"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "1576"; repStart "-2904"; chr7 rmsk exon 123442319 123442393 2750 - . gene_id "ERVLE_7q31.32g"; transcript_id "ERVLE_7q31.32g"; locus "ERVLE_7q31.32g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1916"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "1503"; repStart "-4092"; ### MER4_7q31.32 ### chr7 rmsk gene 123941175 123945394 . - . gene_id "MER4_7q31.32"; transcript_id "MER4_7q31.32"; locus "MER4_7q31.32"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0402"; model_cov "3274"; model_pct "49.6"; chr7 rmsk exon 123941175 123941772 4252 - . gene_id "MER4_7q31.32"; transcript_id "MER4_7q31.32"; locus "MER4_7q31.32"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0402"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 123941778 123944626 13507 - . gene_id "MER4_7q31.32"; transcript_id "MER4_7q31.32"; locus "MER4_7q31.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0402"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3752"; repStart "-2"; chr7 rmsk exon 123944652 123945283 1399 - . gene_id "MER4_7q31.32"; transcript_id "MER4_7q31.32"; locus "MER4_7q31.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0402"; repClass "LTR"; repEnd "2114"; repFamily "ERV1"; repLeft "1786"; repStart "-4484"; chr7 rmsk exon 123945292 123945394 669 - . gene_id "MER4_7q31.32"; transcript_id "MER4_7q31.32"; locus "MER4_7q31.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0402"; repClass "LTR"; repEnd "140"; repFamily "ERV1"; repLeft "38"; repStart "-6458"; ### ERVLB4_7q31.32 ### chr7 rmsk gene 124019633 124023158 . + . gene_id "ERVLB4_7q31.32"; transcript_id "ERVLB4_7q31.32"; locus "ERVLB4_7q31.32"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0849"; model_cov "3397"; model_pct "59.5"; chr7 rmsk exon 124019633 124020800 6493 + . gene_id "ERVLB4_7q31.32"; transcript_id "ERVLB4_7q31.32"; locus "ERVLB4_7q31.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0849"; repClass "LTR"; repEnd "3139"; repFamily "ERVL"; repLeft "-2575"; repStart "1960"; chr7 rmsk exon 124020954 124021091 12517 + . gene_id "ERVLB4_7q31.32"; transcript_id "ERVLB4_7q31.32"; locus "ERVLB4_7q31.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0849"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-2436"; repStart "3141"; chr7 rmsk exon 124021123 124023158 12517 + . gene_id "ERVLB4_7q31.32"; transcript_id "ERVLB4_7q31.32"; locus "ERVLB4_7q31.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0849"; repClass "LTR"; repEnd "5360"; repFamily "ERVL"; repLeft "-354"; repStart "3279"; ### MER4B_7q31.33a ### chr7 rmsk gene 124436162 124437239 . + . gene_id "MER4B_7q31.33a"; transcript_id "MER4B_7q31.33a"; locus "MER4B_7q31.33a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0217"; model_cov "832"; model_pct "12.3"; chr7 rmsk exon 124436162 124436190 2705 + . gene_id "MER4B_7q31.33a"; transcript_id "MER4B_7q31.33a"; locus "MER4B_7q31.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0217"; repClass "LTR"; repEnd "5119"; repFamily "ERV1"; repLeft "-1639"; repStart "4641"; chr7 rmsk exon 124436865 124437239 2705 + . gene_id "MER4B_7q31.33a"; transcript_id "MER4B_7q31.33a"; locus "MER4B_7q31.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0217"; repClass "LTR"; repEnd "5645"; repFamily "ERV1"; repLeft "-1113"; repStart "5291"; ### ERV316A3_7q31.33a ### chr7 rmsk gene 124437323 124437827 . + . gene_id "ERV316A3_7q31.33a"; transcript_id "ERV316A3_7q31.33a"; locus "ERV316A3_7q31.33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1443"; model_cov "520"; model_pct "10.0"; chr7 rmsk exon 124437323 124437827 710 + . gene_id "ERV316A3_7q31.33a"; transcript_id "ERV316A3_7q31.33a"; locus "ERV316A3_7q31.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1443"; repClass "LTR"; repEnd "5078"; repFamily "ERVL"; repLeft "-148"; repStart "4558"; ### HERVL_7q31.33a ### chr7 rmsk gene 124614638 124620015 . + . gene_id "HERVL_7q31.33a"; transcript_id "HERVL_7q31.33a"; locus "HERVL_7q31.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0724"; model_cov "4964"; model_pct "87.8"; chr7 rmsk exon 124614638 124615082 3310 + . gene_id "HERVL_7q31.33a"; transcript_id "HERVL_7q31.33a"; locus "HERVL_7q31.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0724"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 124615083 124620015 30513 + . gene_id "HERVL_7q31.33a"; transcript_id "HERVL_7q31.33a"; locus "HERVL_7q31.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0724"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "-702"; repStart "-12"; ### HERVL_7q31.33b ### chr7 rmsk gene 124687445 124690163 . + . gene_id "HERVL_7q31.33b"; transcript_id "HERVL_7q31.33b"; locus "HERVL_7q31.33b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0725"; model_cov "2278"; model_pct "40.3"; chr7 rmsk exon 124687445 124689600 8382 + . gene_id "HERVL_7q31.33b"; transcript_id "HERVL_7q31.33b"; locus "HERVL_7q31.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0725"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3376"; chr7 rmsk exon 124689601 124690163 1907 + . gene_id "HERVL_7q31.33b"; transcript_id "HERVL_7q31.33b"; locus "HERVL_7q31.33b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0725"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_7q31.33a ### chr7 rmsk gene 124729157 124734734 . + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0664"; model_cov "4908"; model_pct "63.6"; chr7 rmsk exon 124729157 124729555 2591 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 124729558 124732432 16137 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr7 rmsk exon 124732427 124732574 892 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 124732565 124733065 3248 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr7 rmsk exon 124733068 124733730 4423 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 124733732 124733947 1381 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 124733946 124734324 2454 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 124734326 124734734 2719 + . gene_id "HERVH_7q31.33a"; transcript_id "HERVH_7q31.33a"; locus "HERVH_7q31.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0664"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HERVH_7q31.33b ### chr7 rmsk gene 124960669 124963952 . - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0665"; model_cov "3447"; model_pct "44.7"; chr7 rmsk exon 124960669 124961062 1841 - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0665"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-6"; repStart "-39"; chr7 rmsk exon 124961063 124961499 2741 - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0665"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr7 rmsk exon 124961504 124962112 3012 - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0665"; repClass "LTR"; repEnd "5632"; repFamily "ERV1"; repLeft "4445"; repStart "-2081"; chr7 rmsk exon 124962115 124962971 5667 - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0665"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr7 rmsk exon 124962951 124963952 6141 - . gene_id "HERVH_7q31.33b"; transcript_id "HERVH_7q31.33b"; locus "HERVH_7q31.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0665"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2018"; repStart "-4718"; ### HERVH_7q31.33c ### chr7 rmsk gene 125259795 125264637 . - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0666"; model_cov "4450"; model_pct "57.7"; chr7 rmsk exon 125259795 125259939 932 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "5744"; repFamily "ERV1"; repLeft "5600"; repStart "-1969"; chr7 rmsk exon 125259941 125260597 4244 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 125260600 125261104 3378 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 125261095 125261244 944 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 125261224 125264188 20507 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 125264191 125264637 3357 - . gene_id "HERVH_7q31.33c"; transcript_id "HERVH_7q31.33c"; locus "HERVH_7q31.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0666"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4B_7q31.33b ### chr7 rmsk gene 125578911 125579958 . + . gene_id "MER4B_7q31.33b"; transcript_id "MER4B_7q31.33b"; locus "MER4B_7q31.33b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0218"; model_cov "1073"; model_pct "15.9"; chr7 rmsk exon 125578911 125579958 2512 + . gene_id "MER4B_7q31.33b"; transcript_id "MER4B_7q31.33b"; locus "MER4B_7q31.33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0218"; repClass "LTR"; repEnd "4472"; repFamily "ERV1"; repLeft "-2286"; repStart "3399"; ### ERVLE_7q31.33a ### chr7 rmsk gene 125638379 125640566 . + . gene_id "ERVLE_7q31.33a"; transcript_id "ERVLE_7q31.33a"; locus "ERVLE_7q31.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1921"; model_cov "1328"; model_pct "23.4"; chr7 rmsk exon 125638379 125638635 314 + . gene_id "ERVLE_7q31.33a"; transcript_id "ERVLE_7q31.33a"; locus "ERVLE_7q31.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1921"; repClass "LTR"; repEnd "2303"; repFamily "ERVL"; repLeft "-3364"; repStart "2041"; chr7 rmsk exon 125638825 125639497 739 + . gene_id "ERVLE_7q31.33a"; transcript_id "ERVLE_7q31.33a"; locus "ERVLE_7q31.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1921"; repClass "LTR"; repEnd "2806"; repFamily "ERVL"; repLeft "-2861"; repStart "2048"; chr7 rmsk exon 125640272 125640566 618 + . gene_id "ERVLE_7q31.33a"; transcript_id "ERVLE_7q31.33a"; locus "ERVLE_7q31.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1921"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-1234"; repStart "4125"; ### ERVLB4_7q31.33a ### chr7 rmsk gene 125706466 125708625 . + . gene_id "ERVLB4_7q31.33a"; transcript_id "ERVLB4_7q31.33a"; locus "ERVLB4_7q31.33a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0851"; model_cov "1439"; model_pct "25.2"; chr7 rmsk exon 125706466 125706815 1795 + . gene_id "ERVLB4_7q31.33a"; transcript_id "ERVLB4_7q31.33a"; locus "ERVLB4_7q31.33a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0851"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-118"; repStart "-41"; chr7 rmsk exon 125706816 125707305 7150 + . gene_id "ERVLB4_7q31.33a"; transcript_id "ERVLB4_7q31.33a"; locus "ERVLB4_7q31.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0851"; repClass "LTR"; repEnd "2034"; repFamily "ERVL"; repLeft "-3680"; repStart "1541"; chr7 rmsk exon 125707690 125708189 7150 + . gene_id "ERVLB4_7q31.33a"; transcript_id "ERVLB4_7q31.33a"; locus "ERVLB4_7q31.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0851"; repClass "LTR"; repEnd "2560"; repFamily "ERVL"; repLeft "-3154"; repStart "2035"; chr7 rmsk exon 125708227 125708625 7150 + . gene_id "ERVLB4_7q31.33a"; transcript_id "ERVLB4_7q31.33a"; locus "ERVLB4_7q31.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0851"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2732"; repStart "2561"; ### ERVLB4_7q31.33b ### chr7 rmsk gene 125716839 125717389 . + . gene_id "ERVLB4_7q31.33b"; transcript_id "ERVLB4_7q31.33b"; locus "ERVLB4_7q31.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0852"; model_cov "591"; model_pct "10.3"; chr7 rmsk exon 125716839 125717389 2890 + . gene_id "ERVLB4_7q31.33b"; transcript_id "ERVLB4_7q31.33b"; locus "ERVLB4_7q31.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0852"; repClass "LTR"; repEnd "3560"; repFamily "ERVL"; repLeft "-2154"; repStart "2969"; ### ERV316A3_7q31.33b ### chr7 rmsk gene 125717870 125719088 . + . gene_id "ERV316A3_7q31.33b"; transcript_id "ERV316A3_7q31.33b"; locus "ERV316A3_7q31.33b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1446"; model_cov "1224"; model_pct "23.4"; chr7 rmsk exon 125717870 125719088 2642 + . gene_id "ERV316A3_7q31.33b"; transcript_id "ERV316A3_7q31.33b"; locus "ERV316A3_7q31.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1446"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "-2711"; repStart "1291"; ### ERVL_7q31.33 ### chr7 rmsk gene 125800924 125806593 . + . gene_id "ERVL_7q31.33"; transcript_id "ERVL_7q31.33"; locus "ERVL_7q31.33"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0226"; model_cov "5197"; model_pct "90.3"; chr7 rmsk exon 125800924 125806072 26960 + . gene_id "ERVL_7q31.33"; transcript_id "ERVL_7q31.33"; locus "ERVL_7q31.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0226"; repClass "LTR"; repEnd "5754"; repFamily "ERVL"; repLeft "-3"; repStart "557"; chr7 rmsk exon 125806077 125806593 2261 + . gene_id "ERVL_7q31.33"; transcript_id "ERVL_7q31.33"; locus "ERVL_7q31.33"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0226"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "3"; ### HERVH_7q31.33d ### chr7 rmsk gene 125909965 125915739 . + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0667"; model_cov "4895"; model_pct "63.5"; chr7 rmsk exon 125909965 125910413 3634 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 125910416 125913392 19495 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr7 rmsk exon 125913387 125913536 863 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 125913541 125914031 3306 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr7 rmsk exon 125914034 125914695 4338 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 125914697 125914912 1415 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 125914911 125915290 2519 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 125915291 125915739 3524 + . gene_id "HERVH_7q31.33d"; transcript_id "HERVH_7q31.33d"; locus "HERVH_7q31.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0667"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_7q31.33e ### chr7 rmsk gene 125917557 125924110 . + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0668"; model_cov "5761"; model_pct "74.7"; chr7 rmsk exon 125917557 125917965 2779 + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0668"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr7 rmsk exon 125917968 125923102 24405 + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0668"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "-2568"; repStart "1"; chr7 rmsk exon 125923100 125923323 1392 + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0668"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr7 rmsk exon 125923322 125923700 2377 + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0668"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr7 rmsk exon 125923701 125924110 2797 + . gene_id "HERVH_7q31.33e"; transcript_id "HERVH_7q31.33e"; locus "HERVH_7q31.33e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0668"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_7q31.33c ### chr7 rmsk gene 125940888 125943076 . - . gene_id "HERVL_7q31.33c"; transcript_id "HERVL_7q31.33c"; locus "HERVL_7q31.33c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0727"; model_cov "2220"; model_pct "39.3"; chr7 rmsk exon 125940888 125943076 15923 - . gene_id "HERVL_7q31.33c"; transcript_id "HERVL_7q31.33c"; locus "HERVL_7q31.33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0727"; repClass "LTR"; repEnd "2688"; repFamily "ERVL"; repLeft "468"; repStart "-2966"; ### ERVLE_7q31.33b ### chr7 rmsk gene 126004493 126006441 . - . gene_id "ERVLE_7q31.33b"; transcript_id "ERVLE_7q31.33b"; locus "ERVLE_7q31.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1924"; model_cov "1712"; model_pct "30.2"; chr7 rmsk exon 126004493 126004851 598 - . gene_id "ERVLE_7q31.33b"; transcript_id "ERVLE_7q31.33b"; locus "ERVLE_7q31.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1924"; repClass "LTR"; repEnd "4446"; repFamily "ERVL"; repLeft "4081"; repStart "-1221"; chr7 rmsk exon 126004907 126005106 473 - . gene_id "ERVLE_7q31.33b"; transcript_id "ERVLE_7q31.33b"; locus "ERVLE_7q31.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1924"; repClass "LTR"; repEnd "3992"; repFamily "ERVL"; repLeft "3796"; repStart "-1675"; chr7 rmsk exon 126005336 126006441 2244 - . gene_id "ERVLE_7q31.33b"; transcript_id "ERVLE_7q31.33b"; locus "ERVLE_7q31.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1924"; repClass "LTR"; repEnd "3181"; repFamily "ERVL"; repLeft "2030"; repStart "-2486"; ### ERV316A3_7q31.33c ### chr7 rmsk gene 126052179 126052730 . + . gene_id "ERV316A3_7q31.33c"; transcript_id "ERV316A3_7q31.33c"; locus "ERV316A3_7q31.33c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1447"; model_cov "573"; model_pct "11.0"; chr7 rmsk exon 126052179 126052730 1748 + . gene_id "ERV316A3_7q31.33c"; transcript_id "ERV316A3_7q31.33c"; locus "ERV316A3_7q31.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1447"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2389"; ### HERVL_7q31.33d ### chr7 rmsk gene 126649147 126652841 . + . gene_id "HERVL_7q31.33d"; transcript_id "HERVL_7q31.33d"; locus "HERVL_7q31.33d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0728"; model_cov "2777"; model_pct "49.1"; chr7 rmsk exon 126649147 126649593 3397 + . gene_id "HERVL_7q31.33d"; transcript_id "HERVL_7q31.33d"; locus "HERVL_7q31.33d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0728"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 126649606 126652364 21538 + . gene_id "HERVL_7q31.33d"; transcript_id "HERVL_7q31.33d"; locus "HERVL_7q31.33d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0728"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2877"; chr7 rmsk exon 126652369 126652841 3103 + . gene_id "HERVL_7q31.33d"; transcript_id "HERVL_7q31.33d"; locus "HERVL_7q31.33d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0728"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### MER61_7q31.33 ### chr7 rmsk gene 126668002 126673337 . + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0220"; model_cov "4135"; model_pct "79.3"; chr7 rmsk exon 126668002 126668324 1754 + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0220"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 126668325 126668805 2089 + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0220"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-4717"; repStart "1"; chr7 rmsk exon 126668815 126668877 309 + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0220"; repClass "LTR"; repEnd "1484"; repFamily "ERV1"; repLeft "-3733"; repStart "1408"; chr7 rmsk exon 126669366 126673006 23150 + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0220"; repClass "LTR"; repEnd "5215"; repFamily "ERV1"; repLeft "-2"; repStart "1655"; chr7 rmsk exon 126673009 126673337 1682 + . gene_id "MER61_7q31.33"; transcript_id "MER61_7q31.33"; locus "MER61_7q31.33"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0220"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_7q31.33e ### chr7 rmsk gene 126981922 126983271 . - . gene_id "HERVL_7q31.33e"; transcript_id "HERVL_7q31.33e"; locus "HERVL_7q31.33e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0729"; model_cov "883"; model_pct "15.6"; chr7 rmsk exon 126981922 126981967 3269 - . gene_id "HERVL_7q31.33e"; transcript_id "HERVL_7q31.33e"; locus "HERVL_7q31.33e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0729"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "407"; repStart "-2"; chr7 rmsk exon 126981998 126982401 3269 - . gene_id "HERVL_7q31.33e"; transcript_id "HERVL_7q31.33e"; locus "HERVL_7q31.33e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0729"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "1"; repStart "-47"; chr7 rmsk exon 126982402 126983271 6837 - . gene_id "HERVL_7q31.33e"; transcript_id "HERVL_7q31.33e"; locus "HERVL_7q31.33e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0729"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4771"; repStart "0"; ### HERVL_7q31.33f ### chr7 rmsk gene 126983281 126984721 . + . gene_id "HERVL_7q31.33f"; transcript_id "HERVL_7q31.33f"; locus "HERVL_7q31.33f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0730"; model_cov "983"; model_pct "17.4"; chr7 rmsk exon 126983281 126983539 1787 + . gene_id "HERVL_7q31.33f"; transcript_id "HERVL_7q31.33f"; locus "HERVL_7q31.33f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0730"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "-830"; repStart "4566"; chr7 rmsk exon 126983530 126984272 5643 + . gene_id "HERVL_7q31.33f"; transcript_id "HERVL_7q31.33f"; locus "HERVL_7q31.33f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0730"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4929"; chr7 rmsk exon 126984273 126984721 3274 + . gene_id "HERVL_7q31.33f"; transcript_id "HERVL_7q31.33f"; locus "HERVL_7q31.33f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0730"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_7q32.1 ### chr7 rmsk gene 127541696 127544074 . + . gene_id "ERV316A3_7q32.1"; transcript_id "ERV316A3_7q32.1"; locus "ERV316A3_7q32.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1450"; model_cov "2136"; model_pct "40.9"; chr7 rmsk exon 127541696 127542880 2860 + . gene_id "ERV316A3_7q32.1"; transcript_id "ERV316A3_7q32.1"; locus "ERV316A3_7q32.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1450"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "-1093"; repStart "2918"; chr7 rmsk exon 127543174 127544074 2860 + . gene_id "ERV316A3_7q32.1"; transcript_id "ERV316A3_7q32.1"; locus "ERV316A3_7q32.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1450"; repClass "LTR"; repEnd "5055"; repFamily "ERVL"; repLeft "-171"; repStart "4134"; ### PABLA_7q32.1 ### chr7 rmsk gene 128896054 128900883 . + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0078"; model_cov "5568"; model_pct "100.0"; chr7 rmsk exon 128896054 128896130 290 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "-829"; repFamily "ERV1"; repLeft "-5844"; repStart "-930"; chr7 rmsk exon 128896140 128896608 3124 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "-437"; repFamily "ERV1"; repLeft "-5452"; repStart "-930"; chr7 rmsk exon 128896916 128897029 3124 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "-315"; repFamily "ERV1"; repLeft "-5330"; repStart "-436"; chr7 rmsk exon 128897041 128897438 2093 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "-4494"; repStart "163"; chr7 rmsk exon 128897439 128898055 13050 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "-2568"; repStart "1255"; chr7 rmsk exon 128898356 128900883 13050 + . gene_id "PABLA_7q32.1"; transcript_id "PABLA_7q32.1"; locus "PABLA_7q32.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0078"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-3"; repStart "1709"; ### HERVL_7q32.1 ### chr7 rmsk gene 129444201 129450234 . - . gene_id "HERVL_7q32.1"; transcript_id "HERVL_7q32.1"; locus "HERVL_7q32.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0731"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 129444201 129444645 3217 - . gene_id "HERVL_7q32.1"; transcript_id "HERVL_7q32.1"; locus "HERVL_7q32.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0731"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 129444646 129450234 45728 - . gene_id "HERVL_7q32.1"; transcript_id "HERVL_7q32.1"; locus "HERVL_7q32.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0731"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HARLEQUIN_7q32.1a ### chr7 rmsk gene 129578164 129583087 . + . gene_id "HARLEQUIN_7q32.1a"; transcript_id "HARLEQUIN_7q32.1a"; locus "HARLEQUIN_7q32.1a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0100"; model_cov "3772"; model_pct "54.7"; chr7 rmsk exon 129578164 129578524 1528 + . gene_id "HARLEQUIN_7q32.1a"; transcript_id "HARLEQUIN_7q32.1a"; locus "HARLEQUIN_7q32.1a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0100"; repClass "LTR"; repEnd "408"; repFamily "ERV1"; repLeft "-55"; repStart "1"; chr7 rmsk exon 129578830 129578886 1528 + . gene_id "HARLEQUIN_7q32.1a"; transcript_id "HARLEQUIN_7q32.1a"; locus "HARLEQUIN_7q32.1a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0100"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "409"; chr7 rmsk exon 129578887 129579730 4740 + . gene_id "HARLEQUIN_7q32.1a"; transcript_id "HARLEQUIN_7q32.1a"; locus "HARLEQUIN_7q32.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0100"; repClass "LTR"; repEnd "-82"; repFamily "ERV1"; repLeft "-6978"; repStart "-950"; chr7 rmsk exon 129579724 129583087 23529 + . gene_id "HARLEQUIN_7q32.1a"; transcript_id "HARLEQUIN_7q32.1a"; locus "HARLEQUIN_7q32.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0100"; repClass "LTR"; repEnd "4726"; repFamily "ERV1"; repLeft "-2170"; repStart "1822"; ### HARLEQUIN_7q32.1b ### chr7 rmsk gene 129583380 129586675 . + . gene_id "HARLEQUIN_7q32.1b"; transcript_id "HARLEQUIN_7q32.1b"; locus "HARLEQUIN_7q32.1b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0101"; model_cov "2900"; model_pct "42.1"; chr7 rmsk exon 129583380 129583927 10321 + . gene_id "HARLEQUIN_7q32.1b"; transcript_id "HARLEQUIN_7q32.1b"; locus "HARLEQUIN_7q32.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0101"; repClass "LTR"; repEnd "4161"; repFamily "ERV1"; repLeft "-2735"; repStart "3603"; chr7 rmsk exon 129583925 129586276 13559 + . gene_id "HARLEQUIN_7q32.1b"; transcript_id "HARLEQUIN_7q32.1b"; locus "HARLEQUIN_7q32.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0101"; repClass "LTR"; repEnd "6894"; repFamily "ERV1"; repLeft "-2"; repStart "4552"; chr7 rmsk exon 129586277 129586675 1432 + . gene_id "HARLEQUIN_7q32.1b"; transcript_id "HARLEQUIN_7q32.1b"; locus "HARLEQUIN_7q32.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0101"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### MER61_7q32.2 ### chr7 rmsk gene 130256187 130262612 . + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0221"; model_cov "5991"; model_pct "100.0"; chr7 rmsk exon 130256187 130256605 2761 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0221"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 130256606 130257630 5071 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0221"; repClass "LTR"; repEnd "1118"; repFamily "ERV1"; repLeft "-4099"; repStart "2"; chr7 rmsk exon 130257942 130258388 19849 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0221"; repClass "LTR"; repEnd "1607"; repFamily "ERV1"; repLeft "-3610"; repStart "750"; chr7 rmsk exon 130258491 130259466 19849 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0221"; repClass "LTR"; repEnd "3486"; repFamily "ERV1"; repLeft "-1731"; repStart "1608"; chr7 rmsk exon 130259768 130261816 19849 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0221"; repClass "LTR"; repEnd "5174"; repFamily "ERV1"; repLeft "-43"; repStart "3076"; chr7 rmsk exon 130262127 130262188 19849 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0221"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5175"; chr7 rmsk exon 130262189 130262612 2873 + . gene_id "MER61_7q32.2"; transcript_id "MER61_7q32.2"; locus "MER61_7q32.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0221"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFH19_7q32.2 ### chr7 rmsk gene 130312651 130317104 . - . gene_id "HERVFH19_7q32.2"; transcript_id "HERVFH19_7q32.2"; locus "HERVFH19_7q32.2"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0020"; model_cov "3824"; model_pct "49.5"; chr7 rmsk exon 130312651 130313058 2220 - . gene_id "HERVFH19_7q32.2"; transcript_id "HERVFH19_7q32.2"; locus "HERVFH19_7q32.2"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0020"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 130313059 130316655 28354 - . gene_id "HERVFH19_7q32.2"; transcript_id "HERVFH19_7q32.2"; locus "HERVFH19_7q32.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0020"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "4061"; repStart "0"; chr7 rmsk exon 130316929 130317104 28354 - . gene_id "HERVFH19_7q32.2"; transcript_id "HERVFH19_7q32.2"; locus "HERVFH19_7q32.2"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0020"; repClass "LTR"; repEnd "4060"; repFamily "ERV1"; repLeft "3894"; repStart "-3659"; ### PRIMA41_7q32.2 ### chr7 rmsk gene 130596648 130598518 . + . gene_id "PRIMA41_7q32.2"; transcript_id "PRIMA41_7q32.2"; locus "PRIMA41_7q32.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0075"; model_cov "1098"; model_pct "14.2"; chr7 rmsk exon 130596648 130596725 443 + . gene_id "PRIMA41_7q32.2"; transcript_id "PRIMA41_7q32.2"; locus "PRIMA41_7q32.2"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0075"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "0"; repStart "519"; chr7 rmsk exon 130597261 130597970 814 + . gene_id "PRIMA41_7q32.2"; transcript_id "PRIMA41_7q32.2"; locus "PRIMA41_7q32.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0075"; repClass "LTR"; repEnd "2395"; repFamily "ERV1"; repLeft "-5361"; repStart "1692"; chr7 rmsk exon 130598120 130598518 786 + . gene_id "PRIMA41_7q32.2"; transcript_id "PRIMA41_7q32.2"; locus "PRIMA41_7q32.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0075"; repClass "LTR"; repEnd "4875"; repFamily "ERV1"; repLeft "-2881"; repStart "4480"; ### ERVLE_7q32.2a ### chr7 rmsk gene 130661514 130662373 . + . gene_id "ERVLE_7q32.2a"; transcript_id "ERVLE_7q32.2a"; locus "ERVLE_7q32.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1927"; model_cov "896"; model_pct "15.8"; chr7 rmsk exon 130661514 130662373 3697 + . gene_id "ERVLE_7q32.2a"; transcript_id "ERVLE_7q32.2a"; locus "ERVLE_7q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1927"; repClass "LTR"; repEnd "902"; repFamily "ERVL"; repLeft "-4765"; repStart "6"; ### ERVLE_7q32.2b ### chr7 rmsk gene 130706853 130708286 . + . gene_id "ERVLE_7q32.2b"; transcript_id "ERVLE_7q32.2b"; locus "ERVLE_7q32.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1928"; model_cov "905"; model_pct "16.0"; chr7 rmsk exon 130706853 130707248 675 + . gene_id "ERVLE_7q32.2b"; transcript_id "ERVLE_7q32.2b"; locus "ERVLE_7q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1928"; repClass "LTR"; repEnd "3880"; repFamily "ERVL"; repLeft "-1787"; repStart "3415"; chr7 rmsk exon 130707515 130707708 720 + . gene_id "ERVLE_7q32.2b"; transcript_id "ERVLE_7q32.2b"; locus "ERVLE_7q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1928"; repClass "LTR"; repEnd "4681"; repFamily "ERVL"; repLeft "-986"; repStart "4477"; chr7 rmsk exon 130708050 130708286 630 + . gene_id "ERVLE_7q32.2b"; transcript_id "ERVLE_7q32.2b"; locus "ERVLE_7q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1928"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "-648"; repStart "4783"; ### ERVLE_7q32.3a ### chr7 rmsk gene 131514572 131517384 . + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1929"; model_cov "1241"; model_pct "21.9"; chr7 rmsk exon 131514572 131514600 336 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "272"; repFamily "ERVL"; repLeft "-5395"; repStart "245"; chr7 rmsk exon 131514909 131514946 336 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-5363"; repStart "273"; chr7 rmsk exon 131515177 131515400 336 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "528"; repFamily "ERVL"; repLeft "-5139"; repStart "305"; chr7 rmsk exon 131515810 131516258 1156 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "1163"; repFamily "ERVL"; repLeft "-4504"; repStart "686"; chr7 rmsk exon 131516532 131516632 1156 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "1281"; repFamily "ERVL"; repLeft "-4386"; repStart "1164"; chr7 rmsk exon 131517088 131517384 1156 + . gene_id "ERVLE_7q32.3a"; transcript_id "ERVLE_7q32.3a"; locus "ERVLE_7q32.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1929"; repClass "LTR"; repEnd "1601"; repFamily "ERVL"; repLeft "-4066"; repStart "1235"; ### ERVLE_7q32.3b ### chr7 rmsk gene 131518658 131519348 . - . gene_id "ERVLE_7q32.3b"; transcript_id "ERVLE_7q32.3b"; locus "ERVLE_7q32.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1930"; model_cov "629"; model_pct "11.1"; chr7 rmsk exon 131518658 131518800 414 - . gene_id "ERVLE_7q32.3b"; transcript_id "ERVLE_7q32.3b"; locus "ERVLE_7q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1930"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "4305"; repStart "-1219"; chr7 rmsk exon 131518859 131519348 851 - . gene_id "ERVLE_7q32.3b"; transcript_id "ERVLE_7q32.3b"; locus "ERVLE_7q32.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1930"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3533"; repStart "-1648"; ### HERVW_7q32.3 ### chr7 rmsk gene 131820842 131824924 . - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0170"; model_cov "4975"; model_pct "57.7"; chr7 rmsk exon 131820842 131821605 5155 - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0170"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 131821606 131821898 2267 - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0170"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr7 rmsk exon 131821921 131823842 11004 - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0170"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chr7 rmsk exon 131823826 131824163 2899 - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0170"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1679"; repStart "-6610"; chr7 rmsk exon 131824161 131824924 6096 - . gene_id "HERVW_7q32.3"; transcript_id "HERVW_7q32.3"; locus "HERVW_7q32.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0170"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "1106"; repStart "-6762"; ### ERVLE_7q33a ### chr7 rmsk gene 133126066 133131195 . + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1931"; model_cov "2511"; model_pct "44.3"; chr7 rmsk exon 133126066 133126142 361 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "2142"; repFamily "ERVL"; repLeft "-3525"; repStart "2066"; chr7 rmsk exon 133126173 133126722 1123 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2877"; repStart "2171"; chr7 rmsk exon 133127849 133128174 3035 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "3131"; repFamily "ERVL"; repLeft "-2536"; repStart "2795"; chr7 rmsk exon 133128476 133129445 3035 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "4122"; repFamily "ERVL"; repLeft "-1545"; repStart "3132"; chr7 rmsk exon 133129507 133129727 522 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "4455"; repFamily "ERVL"; repLeft "-1212"; repStart "4242"; chr7 rmsk exon 133130051 133130142 522 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "-1128"; repStart "4456"; chr7 rmsk exon 133130692 133130844 529 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "5003"; repFamily "ERVL"; repLeft "-664"; repStart "4856"; chr7 rmsk exon 133131146 133131195 529 + . gene_id "ERVLE_7q33a"; transcript_id "ERVLE_7q33a"; locus "ERVLE_7q33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1931"; repClass "LTR"; repEnd "5051"; repFamily "ERVL"; repLeft "-616"; repStart "5004"; ### HERVL_7q33a ### chr7 rmsk gene 133643147 133644430 . - . gene_id "HERVL_7q33a"; transcript_id "HERVL_7q33a"; locus "HERVL_7q33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0732"; model_cov "926"; model_pct "16.4"; chr7 rmsk exon 133643147 133643522 2589 - . gene_id "HERVL_7q33a"; transcript_id "HERVL_7q33a"; locus "HERVL_7q33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0732"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "1"; repStart "-78"; chr7 rmsk exon 133643523 133643917 2947 - . gene_id "HERVL_7q33a"; transcript_id "HERVL_7q33a"; locus "HERVL_7q33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0732"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5259"; repStart "0"; chr7 rmsk exon 133643899 133644430 4150 - . gene_id "HERVL_7q33a"; transcript_id "HERVL_7q33a"; locus "HERVL_7q33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0732"; repClass "LTR"; repEnd "1931"; repFamily "ERVL"; repLeft "1400"; repStart "-3723"; ### MER41_7q33 ### chr7 rmsk gene 134086639 134091633 . - . gene_id "MER41_7q33"; transcript_id "MER41_7q33"; locus "MER41_7q33"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0282"; model_cov "4121"; model_pct "69.3"; chr7 rmsk exon 134086639 134087193 4622 - . gene_id "MER41_7q33"; transcript_id "MER41_7q33"; locus "MER41_7q33"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0282"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 134087194 134090582 12375 - . gene_id "MER41_7q33"; transcript_id "MER41_7q33"; locus "MER41_7q33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0282"; repClass "LTR"; repEnd "5484"; repFamily "ERV1"; repLeft "1987"; repStart "-462"; chr7 rmsk exon 134090564 134091079 2529 - . gene_id "MER41_7q33"; transcript_id "MER41_7q33"; locus "MER41_7q33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0282"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "1"; repStart "-5321"; chr7 rmsk exon 134091080 134091633 4626 - . gene_id "MER41_7q33"; transcript_id "MER41_7q33"; locus "MER41_7q33"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0282"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7q33b ### chr7 rmsk gene 134284783 134285698 . + . gene_id "ERVLE_7q33b"; transcript_id "ERVLE_7q33b"; locus "ERVLE_7q33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1932"; model_cov "862"; model_pct "15.2"; chr7 rmsk exon 134284783 134285363 1777 + . gene_id "ERVLE_7q33b"; transcript_id "ERVLE_7q33b"; locus "ERVLE_7q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1932"; repClass "LTR"; repEnd "5214"; repFamily "ERVL"; repLeft "-453"; repStart "4598"; chr7 rmsk exon 134285475 134285698 469 + . gene_id "ERVLE_7q33b"; transcript_id "ERVLE_7q33b"; locus "ERVLE_7q33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1932"; repClass "LTR"; repEnd "5629"; repFamily "ERVL"; repLeft "-38"; repStart "5383"; ### HERVH48_7q33 ### chr7 rmsk gene 134466869 134470104 . + . gene_id "HERVH48_7q33"; transcript_id "HERVH48_7q33"; locus "HERVH48_7q33"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0027"; model_cov "2633"; model_pct "39.6"; chr7 rmsk exon 134466869 134467685 6022 + . gene_id "HERVH48_7q33"; transcript_id "HERVH48_7q33"; locus "HERVH48_7q33"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0027"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "-831"; repStart "5007"; chr7 rmsk exon 134468794 134469714 5842 + . gene_id "HERVH48_7q33"; transcript_id "HERVH48_7q33"; locus "HERVH48_7q33"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0027"; repClass "LTR"; repEnd "6429"; repFamily "ERV1"; repLeft "-225"; repStart "4612"; chr7 rmsk exon 134469715 134470104 2673 + . gene_id "HERVH48_7q33"; transcript_id "HERVH48_7q33"; locus "HERVH48_7q33"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0027"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_7q33a ### chr7 rmsk gene 134470799 134472046 . - . gene_id "ERV316A3_7q33a"; transcript_id "ERV316A3_7q33a"; locus "ERV316A3_7q33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1451"; model_cov "1213"; model_pct "23.2"; chr7 rmsk exon 134470799 134472046 3205 - . gene_id "ERV316A3_7q33a"; transcript_id "ERV316A3_7q33a"; locus "ERV316A3_7q33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1451"; repClass "LTR"; repEnd "3592"; repFamily "ERVL"; repLeft "2379"; repStart "-1634"; ### HERVI_7q33a ### chr7 rmsk gene 134546177 134548478 . + . gene_id "HERVI_7q33a"; transcript_id "HERVI_7q33a"; locus "HERVI_7q33a"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0015"; model_cov "1527"; model_pct "19.6"; chr7 rmsk exon 134546177 134546683 3753 + . gene_id "HERVI_7q33a"; transcript_id "HERVI_7q33a"; locus "HERVI_7q33a"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0015"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 134546697 134547038 645 + . gene_id "HERVI_7q33a"; transcript_id "HERVI_7q33a"; locus "HERVI_7q33a"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0015"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-7446"; repStart "1"; chr7 rmsk exon 134547175 134547687 1629 + . gene_id "HERVI_7q33a"; transcript_id "HERVI_7q33a"; locus "HERVI_7q33a"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0015"; repClass "LTR"; repEnd "1022"; repFamily "ERV1"; repLeft "-6763"; repStart "498"; chr7 rmsk exon 134547812 134548478 3134 + . gene_id "HERVI_7q33a"; transcript_id "HERVI_7q33a"; locus "HERVI_7q33a"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0015"; repClass "LTR"; repEnd "4546"; repFamily "ERV1"; repLeft "-3239"; repStart "3881"; ### HERVS71_7q33 ### chr7 rmsk gene 134548479 134557896 . + . gene_id "HERVS71_7q33"; transcript_id "HERVS71_7q33"; locus "HERVS71_7q33"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0021"; model_cov "8519"; model_pct "94.9"; chr7 rmsk exon 134548479 134549049 2128 + . gene_id "HERVS71_7q33"; transcript_id "HERVS71_7q33"; locus "HERVS71_7q33"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0021"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 134549071 134551552 8717 + . gene_id "HERVS71_7q33"; transcript_id "HERVS71_7q33"; locus "HERVS71_7q33"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0021"; repClass "LTR"; repEnd "2710"; repFamily "ERV1"; repLeft "-6268"; repStart "27"; chr7 rmsk exon 134551542 134557372 34842 + . gene_id "HERVS71_7q33"; transcript_id "HERVS71_7q33"; locus "HERVS71_7q33"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0021"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "3073"; chr7 rmsk exon 134557373 134557896 2584 + . gene_id "HERVS71_7q33"; transcript_id "HERVS71_7q33"; locus "HERVS71_7q33"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0021"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVI_7q33b ### chr7 rmsk gene 134557922 134559549 . + . gene_id "HERVI_7q33b"; transcript_id "HERVI_7q33b"; locus "HERVI_7q33b"; category "internal"; intModel "HERVI-int"; locid "HERVI-int_0016"; model_cov "1634"; model_pct "21.0"; chr7 rmsk exon 134557922 134559549 9778 + . gene_id "HERVI_7q33b"; transcript_id "HERVI_7q33b"; locus "HERVI_7q33b"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0016"; repClass "LTR"; repEnd "6285"; repFamily "ERV1"; repLeft "-1500"; repStart "4651"; ### HERVI_7q33c ### chr7 rmsk gene 134563729 134565429 . + . gene_id "HERVI_7q33c"; transcript_id "HERVI_7q33c"; locus "HERVI_7q33c"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0017"; model_cov "1112"; model_pct "14.3"; chr7 rmsk exon 134563729 134564837 8918 + . gene_id "HERVI_7q33c"; transcript_id "HERVI_7q33c"; locus "HERVI_7q33c"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0017"; repClass "LTR"; repEnd "7785"; repFamily "ERV1"; repLeft "0"; repStart "6673"; chr7 rmsk exon 134564838 134565429 3512 + . gene_id "HERVI_7q33c"; transcript_id "HERVI_7q33c"; locus "HERVI_7q33c"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0017"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-133"; repStart "-174"; ### HERVW_7q33 ### chr7 rmsk gene 134585423 134593015 . + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0171"; model_cov "7071"; model_pct "82.0"; chr7 rmsk exon 134585423 134586200 5261 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 134586201 134586902 5193 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-7939"; repStart "2"; chr7 rmsk exon 134587073 134588218 9477 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "1862"; repFamily "ERV1"; repLeft "-6764"; repStart "704"; chr7 rmsk exon 134588727 134588875 9477 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "2009"; repFamily "ERV1"; repLeft "-6617"; repStart "1863"; chr7 rmsk exon 134588865 134589749 7149 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "3316"; repFamily "ERV1"; repLeft "-5310"; repStart "2430"; chr7 rmsk exon 134589746 134591936 14408 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "3280"; chr7 rmsk exon 134591933 134591970 292 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr7 rmsk exon 134591961 134592252 2479 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr7 rmsk exon 134592253 134593015 5293 + . gene_id "HERVW_7q33"; transcript_id "HERVW_7q33"; locus "HERVW_7q33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0171"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7q33c ### chr7 rmsk gene 134610140 134611160 . - . gene_id "ERVLE_7q33c"; transcript_id "ERVLE_7q33c"; locus "ERVLE_7q33c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1933"; model_cov "937"; model_pct "16.5"; chr7 rmsk exon 134610140 134610337 665 - . gene_id "ERVLE_7q33c"; transcript_id "ERVLE_7q33c"; locus "ERVLE_7q33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1933"; repClass "LTR"; repEnd "2818"; repFamily "ERVL"; repLeft "2612"; repStart "-2849"; chr7 rmsk exon 134610335 134610440 374 - . gene_id "ERVLE_7q33c"; transcript_id "ERVLE_7q33c"; locus "ERVLE_7q33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1933"; repClass "LTR"; repEnd "2692"; repFamily "ERVL"; repLeft "2586"; repStart "-2975"; chr7 rmsk exon 134610509 134610701 366 - . gene_id "ERVLE_7q33c"; transcript_id "ERVLE_7q33c"; locus "ERVLE_7q33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1933"; repClass "LTR"; repEnd "2153"; repFamily "ERVL"; repLeft "1943"; repStart "-3514"; chr7 rmsk exon 134610813 134611160 814 - . gene_id "ERVLE_7q33c"; transcript_id "ERVLE_7q33c"; locus "ERVLE_7q33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1933"; repClass "LTR"; repEnd "1467"; repFamily "ERVL"; repLeft "1052"; repStart "-4200"; ### HARLEQUIN_7q33a ### chr7 rmsk gene 135171264 135175958 . + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0102"; model_cov "4313"; model_pct "62.5"; chr7 rmsk exon 135171264 135171741 3793 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr7 rmsk exon 135171743 135172083 2112 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "2"; chr7 rmsk exon 135172079 135172196 871 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "262"; chr7 rmsk exon 135172192 135172846 4461 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "-5993"; repStart "262"; chr7 rmsk exon 135172831 135173811 6408 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "-4323"; repStart "1570"; chr7 rmsk exon 135173813 135175958 15497 + . gene_id "HARLEQUIN_7q33a"; transcript_id "HARLEQUIN_7q33a"; locus "HARLEQUIN_7q33a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0102"; repClass "LTR"; repEnd "5526"; repFamily "ERV1"; repLeft "-1370"; repStart "3353"; ### HERV3_7q33 ### chr7 rmsk gene 135175955 135180551 . + . gene_id "HERV3_7q33"; transcript_id "HERV3_7q33"; locus "HERV3_7q33"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0032"; model_cov "4645"; model_pct "55.1"; chr7 rmsk exon 135175955 135176995 4223 + . gene_id "HERV3_7q33"; transcript_id "HERV3_7q33"; locus "HERV3_7q33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0032"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "-6100"; repStart "1248"; chr7 rmsk exon 135176994 135180551 16318 + . gene_id "HERV3_7q33"; transcript_id "HERV3_7q33"; locus "HERV3_7q33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0032"; repClass "LTR"; repEnd "6242"; repFamily "ERV1"; repLeft "-2184"; repStart "2675"; ### PABLB_7q33 ### chr7 rmsk gene 135320639 135325703 . - . gene_id "PABLB_7q33"; transcript_id "PABLB_7q33"; locus "PABLB_7q33"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0055"; model_cov "5081"; model_pct "71.3"; chr7 rmsk exon 135320639 135321035 800 - . gene_id "PABLB_7q33"; transcript_id "PABLB_7q33"; locus "PABLB_7q33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0055"; repClass "LTR"; repEnd "5140"; repFamily "ERV1"; repLeft "4763"; repStart "-1982"; chr7 rmsk exon 135321332 135322193 1337 - . gene_id "PABLB_7q33"; transcript_id "PABLB_7q33"; locus "PABLB_7q33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0055"; repClass "LTR"; repEnd "4809"; repFamily "ERV1"; repLeft "3208"; repStart "-2313"; chr7 rmsk exon 135322486 135325143 2589 - . gene_id "PABLB_7q33"; transcript_id "PABLB_7q33"; locus "PABLB_7q33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0055"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "414"; repStart "-3835"; chr7 rmsk exon 135325467 135325703 2589 - . gene_id "PABLB_7q33"; transcript_id "PABLB_7q33"; locus "PABLB_7q33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0055"; repClass "LTR"; repEnd "1138"; repFamily "ERV1"; repLeft "908"; repStart "-5984"; ### ERV316A3_7q33b ### chr7 rmsk gene 135525117 135526758 . + . gene_id "ERV316A3_7q33b"; transcript_id "ERV316A3_7q33b"; locus "ERV316A3_7q33b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1452"; model_cov "845"; model_pct "16.2"; chr7 rmsk exon 135525117 135525223 560 + . gene_id "ERV316A3_7q33b"; transcript_id "ERV316A3_7q33b"; locus "ERV316A3_7q33b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1452"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "-365"; repStart "8"; chr7 rmsk exon 135525229 135525626 3232 + . gene_id "ERV316A3_7q33b"; transcript_id "ERV316A3_7q33b"; locus "ERV316A3_7q33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1452"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "-488"; repStart "4379"; chr7 rmsk exon 135526233 135526705 3232 + . gene_id "ERV316A3_7q33b"; transcript_id "ERV316A3_7q33b"; locus "ERV316A3_7q33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1452"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4739"; chr7 rmsk exon 135526707 135526758 257 + . gene_id "ERV316A3_7q33b"; transcript_id "ERV316A3_7q33b"; locus "ERV316A3_7q33b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1452"; repClass "LTR"; repEnd "53"; repFamily "ERVL"; repLeft "-427"; repStart "2"; ### ERVLB4_7q33 ### chr7 rmsk gene 135853042 135853801 . - . gene_id "ERVLB4_7q33"; transcript_id "ERVLB4_7q33"; locus "ERVLB4_7q33"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0855"; model_cov "793"; model_pct "13.9"; chr7 rmsk exon 135853042 135853801 4772 - . gene_id "ERVLB4_7q33"; transcript_id "ERVLB4_7q33"; locus "ERVLB4_7q33"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0855"; repClass "LTR"; repEnd "5506"; repFamily "ERVL"; repLeft "4713"; repStart "-208"; ### MER4_7q33a ### chr7 rmsk gene 135982177 135985073 . - . gene_id "MER4_7q33a"; transcript_id "MER4_7q33a"; locus "MER4_7q33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0406"; model_cov "2658"; model_pct "40.3"; chr7 rmsk exon 135982177 135982630 2900 - . gene_id "MER4_7q33a"; transcript_id "MER4_7q33a"; locus "MER4_7q33a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0406"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 135982639 135984394 8898 - . gene_id "MER4_7q33a"; transcript_id "MER4_7q33a"; locus "MER4_7q33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0406"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4343"; repStart "-2"; chr7 rmsk exon 135984665 135985073 6981 - . gene_id "MER4_7q33a"; transcript_id "MER4_7q33a"; locus "MER4_7q33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0406"; repClass "LTR"; repEnd "4609"; repFamily "ERV1"; repLeft "4204"; repStart "-1989"; ### MER4B_7q33a ### chr7 rmsk gene 135985319 135988003 . - . gene_id "MER4B_7q33a"; transcript_id "MER4B_7q33a"; locus "MER4B_7q33a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0221"; model_cov "3422"; model_pct "50.6"; chr7 rmsk exon 135985319 135986605 5321 - . gene_id "MER4B_7q33a"; transcript_id "MER4B_7q33a"; locus "MER4B_7q33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0221"; repClass "LTR"; repEnd "4625"; repFamily "ERV1"; repLeft "2095"; repStart "-2133"; chr7 rmsk exon 135986910 135987425 5321 - . gene_id "MER4B_7q33a"; transcript_id "MER4B_7q33a"; locus "MER4B_7q33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0221"; repClass "LTR"; repEnd "1934"; repFamily "ERV1"; repLeft "1429"; repStart "-4824"; chr7 rmsk exon 135987655 135988003 5321 - . gene_id "MER4B_7q33a"; transcript_id "MER4B_7q33a"; locus "MER4B_7q33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0221"; repClass "LTR"; repEnd "1428"; repFamily "ERV1"; repLeft "1041"; repStart "-5330"; ### MER4B_7q33b ### chr7 rmsk gene 135989988 135991173 . - . gene_id "MER4B_7q33b"; transcript_id "MER4B_7q33b"; locus "MER4B_7q33b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0223"; model_cov "1051"; model_pct "15.6"; chr7 rmsk exon 135989988 135990077 443 - . gene_id "MER4B_7q33b"; transcript_id "MER4B_7q33b"; locus "MER4B_7q33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0223"; repClass "LTR"; repEnd "3534"; repFamily "ERV1"; repLeft "3473"; repStart "-3224"; chr7 rmsk exon 135990081 135990515 1622 - . gene_id "MER4B_7q33b"; transcript_id "MER4B_7q33b"; locus "MER4B_7q33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0223"; repClass "LTR"; repEnd "2699"; repFamily "ERV1"; repLeft "2261"; repStart "-4059"; chr7 rmsk exon 135990530 135990637 363 - . gene_id "MER4B_7q33b"; transcript_id "MER4B_7q33b"; locus "MER4B_7q33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0223"; repClass "LTR"; repEnd "-484"; repFamily "ERV1"; repLeft "-562"; repStart "-7242"; chr7 rmsk exon 135990659 135991173 2367 - . gene_id "MER4B_7q33b"; transcript_id "MER4B_7q33b"; locus "MER4B_7q33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0223"; repClass "LTR"; repEnd "-1037"; repFamily "ERV1"; repLeft "-1511"; repStart "-7795"; ### HML1_7q33a ### chr7 rmsk gene 136260544 136264819 . - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0052"; model_cov "2099"; model_pct "34.4"; chr7 rmsk exon 136260544 136260957 1906 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "3"; repStart "0"; chr7 rmsk exon 136261158 136261338 1494 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5876"; repStart "0"; chr7 rmsk exon 136261340 136261819 1874 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "5011"; repStart "-495"; chr7 rmsk exon 136261819 136261939 907 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "4277"; repStart "-1698"; chr7 rmsk exon 136263205 136263664 3320 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "1704"; repStart "-3921"; chr7 rmsk exon 136263699 136264395 5181 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr7 rmsk exon 136264396 136264819 2351 - . gene_id "HML1_7q33a"; transcript_id "HML1_7q33a"; locus "HML1_7q33a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0052"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_7q33 ### chr7 rmsk gene 136509267 136512680 . - . gene_id "HUERSP2_7q33"; transcript_id "HUERSP2_7q33"; locus "HUERSP2_7q33"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0068"; model_cov "1866"; model_pct "60.4"; chr7 rmsk exon 136509267 136510214 5470 - . gene_id "HUERSP2_7q33"; transcript_id "HUERSP2_7q33"; locus "HUERSP2_7q33"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0068"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 136510216 136512680 10726 - . gene_id "HUERSP2_7q33"; transcript_id "HUERSP2_7q33"; locus "HUERSP2_7q33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0068"; repClass "LTR"; repEnd "2644"; repFamily "ERV1"; repLeft "778"; repStart "-444"; ### HERVL_7q33b ### chr7 rmsk gene 136573297 136579506 . - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0733"; model_cov "5653"; model_pct "100.0"; chr7 rmsk exon 136573297 136573337 271 - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0733"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "391"; repStart "-12"; chr7 rmsk exon 136573397 136573812 3015 - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0733"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-110"; repStart "-53"; chr7 rmsk exon 136573813 136579010 18218 - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0733"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 136579011 136579068 3258 - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0733"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "391"; repStart "0"; chr7 rmsk exon 136579108 136579506 3258 - . gene_id "HERVL_7q33b"; transcript_id "HERVL_7q33b"; locus "HERVL_7q33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0733"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "1"; repStart "-54"; ### ERV316A3_7q33c ### chr7 rmsk gene 137207664 137209703 . - . gene_id "ERV316A3_7q33c"; transcript_id "ERV316A3_7q33c"; locus "ERV316A3_7q33c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1456"; model_cov "1597"; model_pct "30.6"; chr7 rmsk exon 137207664 137208872 2721 - . gene_id "ERV316A3_7q33c"; transcript_id "ERV316A3_7q33c"; locus "ERV316A3_7q33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1456"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "1849"; repStart "-2142"; chr7 rmsk exon 137209286 137209643 1190 - . gene_id "ERV316A3_7q33c"; transcript_id "ERV316A3_7q33c"; locus "ERV316A3_7q33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1456"; repClass "LTR"; repEnd "1550"; repFamily "ERVL"; repLeft "1188"; repStart "-3676"; chr7 rmsk exon 137209654 137209703 252 - . gene_id "ERV316A3_7q33c"; transcript_id "ERV316A3_7q33c"; locus "ERV316A3_7q33c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1456"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "1"; repStart "-413"; ### HARLEQUIN_7q33b ### chr7 rmsk gene 137262512 137268846 . - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0103"; model_cov "5629"; model_pct "81.6"; chr7 rmsk exon 137262512 137262997 2313 - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0103"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 137262998 137265886 13569 - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0103"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr7 rmsk exon 137265886 137266882 6949 - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0103"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1570"; repStart "-4322"; chr7 rmsk exon 137266876 137267961 8026 - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0103"; repClass "LTR"; repEnd "1344"; repFamily "ERV1"; repLeft "263"; repStart "-5552"; chr7 rmsk exon 137268352 137268846 2191 - . gene_id "HARLEQUIN_7q33b"; transcript_id "HARLEQUIN_7q33b"; locus "HARLEQUIN_7q33b"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0103"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_7q33d ### chr7 rmsk gene 137631483 137636635 . + . gene_id "ERV316A3_7q33d"; transcript_id "ERV316A3_7q33d"; locus "ERV316A3_7q33d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1457"; model_cov "4425"; model_pct "84.7"; chr7 rmsk exon 137631483 137632576 7716 + . gene_id "ERV316A3_7q33d"; transcript_id "ERV316A3_7q33d"; locus "ERV316A3_7q33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1457"; repClass "LTR"; repEnd "1882"; repFamily "ERVL"; repLeft "-3344"; repStart "797"; chr7 rmsk exon 137632895 137632932 7716 + . gene_id "ERV316A3_7q33d"; transcript_id "ERV316A3_7q33d"; locus "ERV316A3_7q33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1457"; repClass "LTR"; repEnd "1901"; repFamily "ERVL"; repLeft "-3325"; repStart "1883"; chr7 rmsk exon 137633234 137636485 7716 + . gene_id "ERV316A3_7q33d"; transcript_id "ERV316A3_7q33d"; locus "ERV316A3_7q33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1457"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "1902"; chr7 rmsk exon 137636487 137636635 406 + . gene_id "ERV316A3_7q33d"; transcript_id "ERV316A3_7q33d"; locus "ERV316A3_7q33d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1457"; repClass "LTR"; repEnd "139"; repFamily "ERVL"; repLeft "-299"; repStart "2"; ### MER4_7q33b ### chr7 rmsk gene 138032246 138038618 . + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0408"; model_cov "3588"; model_pct "54.4"; chr7 rmsk exon 138032246 138032668 2414 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0408"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 138032672 138033335 3106 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "-5786"; repStart "1"; chr7 rmsk exon 138033433 138033697 1174 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "1132"; repFamily "ERV1"; repLeft "-5466"; repStart "865"; chr7 rmsk exon 138033763 138033942 1087 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "1334"; repFamily "ERV1"; repLeft "-5264"; repStart "1137"; chr7 rmsk exon 138034228 138034390 1087 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "1505"; repFamily "ERV1"; repLeft "-5093"; repStart "1335"; chr7 rmsk exon 138034711 138034774 1087 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "1555"; repFamily "ERV1"; repLeft "-5043"; repStart "1506"; chr7 rmsk exon 138035585 138035751 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "2940"; repFamily "ERV1"; repLeft "-3658"; repStart "2789"; chr7 rmsk exon 138036008 138036035 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3652"; repStart "2941"; chr7 rmsk exon 138036078 138036555 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "3456"; repFamily "ERV1"; repLeft "-3142"; repStart "2947"; chr7 rmsk exon 138036865 138037259 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "3858"; repFamily "ERV1"; repLeft "-2740"; repStart "3457"; chr7 rmsk exon 138037289 138037848 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "4428"; repFamily "ERV1"; repLeft "-2170"; repStart "3859"; chr7 rmsk exon 138038152 138038618 7974 + . gene_id "MER4_7q33b"; transcript_id "MER4_7q33b"; locus "MER4_7q33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0408"; repClass "LTR"; repEnd "4888"; repFamily "ERV1"; repLeft "-1710"; repStart "4429"; ### MER4_7q33c ### chr7 rmsk gene 138042217 138043430 . + . gene_id "MER4_7q33c"; transcript_id "MER4_7q33c"; locus "MER4_7q33c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0409"; model_cov "1646"; model_pct "24.9"; chr7 rmsk exon 138042217 138043430 4323 + . gene_id "MER4_7q33c"; transcript_id "MER4_7q33c"; locus "MER4_7q33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0409"; repClass "LTR"; repEnd "5657"; repFamily "ERV1"; repLeft "-941"; repStart "4011"; ### HERVL_7q33c ### chr7 rmsk gene 138249437 138255835 . + . gene_id "HERVL_7q33c"; transcript_id "HERVL_7q33c"; locus "HERVL_7q33c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0734"; model_cov "5652"; model_pct "100.0"; chr7 rmsk exon 138249437 138251306 44244 + . gene_id "HERVL_7q33c"; transcript_id "HERVL_7q33c"; locus "HERVL_7q33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0734"; repClass "LTR"; repEnd "1854"; repFamily "ERVL"; repLeft "-3800"; repStart "1"; chr7 rmsk exon 138251613 138255375 44244 + . gene_id "HERVL_7q33c"; transcript_id "HERVL_7q33c"; locus "HERVL_7q33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0734"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1855"; chr7 rmsk exon 138255376 138255835 3279 + . gene_id "HERVL_7q33c"; transcript_id "HERVL_7q33c"; locus "HERVL_7q33c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0734"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_7q33a ### chr7 rmsk gene 138329255 138334531 . + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0669"; model_cov "5045"; model_pct "65.4"; chr7 rmsk exon 138329255 138329687 3471 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 138329688 138330117 2007 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr7 rmsk exon 138330193 138332266 12880 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "793"; chr7 rmsk exon 138332267 138333464 7078 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-1805"; repStart "3979"; chr7 rmsk exon 138333465 138334099 4367 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7079"; chr7 rmsk exon 138334100 138334531 3402 + . gene_id "HERVH_7q33a"; transcript_id "HERVH_7q33a"; locus "HERVH_7q33a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0669"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML1_7q33b ### chr7 rmsk gene 138339205 138345859 . + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0053"; model_cov "5666"; model_pct "92.9"; chr7 rmsk exon 138339205 138339537 2781 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "9"; chr7 rmsk exon 138339538 138343412 31349 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "3883"; repFamily "ERVK"; repLeft "-2213"; repStart "1"; chr7 rmsk exon 138343413 138343633 11531 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "4351"; repFamily "ERVK"; repLeft "-1745"; repStart "4131"; chr7 rmsk exon 138343937 138345114 11531 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4352"; chr7 rmsk exon 138345114 138345327 1542 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5656"; chr7 rmsk exon 138345392 138345507 780 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "6085"; repFamily "ERVK"; repLeft "-11"; repStart "5962"; chr7 rmsk exon 138345520 138345859 2777 + . gene_id "HML1_7q33b"; transcript_id "HML1_7q33b"; locus "HML1_7q33b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0053"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_7q33b ### chr7 rmsk gene 138364700 138368299 . + . gene_id "HERVH_7q33b"; transcript_id "HERVH_7q33b"; locus "HERVH_7q33b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0670"; model_cov "3495"; model_pct "45.3"; chr7 rmsk exon 138364700 138365950 7823 + . gene_id "HERVH_7q33b"; transcript_id "HERVH_7q33b"; locus "HERVH_7q33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0670"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1746"; chr7 rmsk exon 138365930 138367635 5518 + . gene_id "HERVH_7q33b"; transcript_id "HERVH_7q33b"; locus "HERVH_7q33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0670"; repClass "LTR"; repEnd "6190"; repFamily "ERV1"; repLeft "-1523"; repStart "4199"; chr7 rmsk exon 138367610 138367866 1647 + . gene_id "HERVH_7q33b"; transcript_id "HERVH_7q33b"; locus "HERVH_7q33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0670"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7458"; chr7 rmsk exon 138367867 138368299 3425 + . gene_id "HERVH_7q33b"; transcript_id "HERVH_7q33b"; locus "HERVH_7q33b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0670"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_7q33a ### chr7 rmsk gene 138439157 138440570 . - . gene_id "HERVIP10F_7q33a"; transcript_id "HERVIP10F_7q33a"; locus "HERVIP10F_7q33a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0054"; model_cov "937"; model_pct "12.1"; chr7 rmsk exon 138439157 138439643 3420 - . gene_id "HERVIP10F_7q33a"; transcript_id "HERVIP10F_7q33a"; locus "HERVIP10F_7q33a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0054"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 138439644 138440570 7762 - . gene_id "HERVIP10F_7q33a"; transcript_id "HERVIP10F_7q33a"; locus "HERVIP10F_7q33a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0054"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "6800"; repStart "0"; ### HERVIP10F_7q33b ### chr7 rmsk gene 138443083 138450635 . - . gene_id "HERVIP10F_7q33b"; transcript_id "HERVIP10F_7q33b"; locus "HERVIP10F_7q33b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0055"; model_cov "6814"; model_pct "88.1"; chr7 rmsk exon 138443083 138449864 55326 - . gene_id "HERVIP10F_7q33b"; transcript_id "HERVIP10F_7q33b"; locus "HERVIP10F_7q33b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0055"; repClass "LTR"; repEnd "6815"; repFamily "ERV1"; repLeft "1"; repStart "-922"; chr7 rmsk exon 138449865 138450115 2820 - . gene_id "HERVIP10F_7q33b"; transcript_id "HERVIP10F_7q33b"; locus "HERVIP10F_7q33b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0055"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "275"; repStart "0"; chr7 rmsk exon 138450427 138450635 2820 - . gene_id "HERVIP10F_7q33b"; transcript_id "HERVIP10F_7q33b"; locus "HERVIP10F_7q33b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0055"; repClass "LTR"; repEnd "274"; repFamily "ERV1"; repLeft "1"; repStart "-237"; ### HERV3_7q34a ### chr7 rmsk gene 138556758 138566149 . - . gene_id "HERV3_7q34a"; transcript_id "HERV3_7q34a"; locus "HERV3_7q34a"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0033"; model_cov "8425"; model_pct "100.0"; chr7 rmsk exon 138556758 138557278 1526 - . gene_id "HERV3_7q34a"; transcript_id "HERV3_7q34a"; locus "HERV3_7q34a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0033"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "26"; repStart "0"; chr7 rmsk exon 138557290 138565603 49084 - . gene_id "HERV3_7q34a"; transcript_id "HERV3_7q34a"; locus "HERV3_7q34a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0033"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 138565605 138566149 2212 - . gene_id "HERV3_7q34a"; transcript_id "HERV3_7q34a"; locus "HERV3_7q34a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0033"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_7q34a ### chr7 rmsk gene 138779415 138781269 . - . gene_id "ERVLB4_7q34a"; transcript_id "ERVLB4_7q34a"; locus "ERVLB4_7q34a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0857"; model_cov "1184"; model_pct "20.7"; chr7 rmsk exon 138779415 138779546 871 - . gene_id "ERVLB4_7q34a"; transcript_id "ERVLB4_7q34a"; locus "ERVLB4_7q34a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0857"; repClass "LTR"; repEnd "139"; repFamily "ERVL"; repLeft "7"; repStart "-381"; chr7 rmsk exon 138779553 138780162 3637 - . gene_id "ERVLB4_7q34a"; transcript_id "ERVLB4_7q34a"; locus "ERVLB4_7q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0857"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5083"; repStart "0"; chr7 rmsk exon 138780477 138780695 1681 - . gene_id "ERVLB4_7q34a"; transcript_id "ERVLB4_7q34a"; locus "ERVLB4_7q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0857"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4070"; repStart "-1424"; chr7 rmsk exon 138780937 138781269 2357 - . gene_id "ERVLB4_7q34a"; transcript_id "ERVLB4_7q34a"; locus "ERVLB4_7q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0857"; repClass "LTR"; repEnd "2860"; repFamily "ERVL"; repLeft "2527"; repStart "-2854"; ### MER41_7q34a ### chr7 rmsk gene 139001188 139006286 . + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0283"; model_cov "5185"; model_pct "87.2"; chr7 rmsk exon 139001188 139001738 4421 + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0283"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 139001739 139001790 291 + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0283"; repClass "LTR"; repEnd "55"; repFamily "ERV1"; repLeft "-5891"; repStart "1"; chr7 rmsk exon 139001824 139002530 4240 + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0283"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5337"; repStart "1"; chr7 rmsk exon 139002576 139005742 13591 + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0283"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1421"; chr7 rmsk exon 139005743 139006286 4092 + . gene_id "MER41_7q34a"; transcript_id "MER41_7q34a"; locus "MER41_7q34a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0283"; repClass "LTR"; repEnd "541"; repFamily "ERV1"; repLeft "-13"; repStart "1"; ### ERV316A3_7q34a ### chr7 rmsk gene 139112301 139113489 . - . gene_id "ERV316A3_7q34a"; transcript_id "ERV316A3_7q34a"; locus "ERV316A3_7q34a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1458"; model_cov "896"; model_pct "17.1"; chr7 rmsk exon 139112301 139112651 1009 - . gene_id "ERV316A3_7q34a"; transcript_id "ERV316A3_7q34a"; locus "ERV316A3_7q34a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1458"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "49"; repStart "-8"; chr7 rmsk exon 139112684 139113489 2469 - . gene_id "ERV316A3_7q34a"; transcript_id "ERV316A3_7q34a"; locus "ERV316A3_7q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1458"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4330"; repStart "0"; ### ERV316A3_7q34b ### chr7 rmsk gene 139113546 139117916 . - . gene_id "ERV316A3_7q34b"; transcript_id "ERV316A3_7q34b"; locus "ERV316A3_7q34b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1459"; model_cov "3209"; model_pct "61.4"; chr7 rmsk exon 139113546 139113656 2469 - . gene_id "ERV316A3_7q34b"; transcript_id "ERV316A3_7q34b"; locus "ERV316A3_7q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1459"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5102"; repStart "0"; chr7 rmsk exon 139113953 139114317 2469 - . gene_id "ERV316A3_7q34b"; transcript_id "ERV316A3_7q34b"; locus "ERV316A3_7q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1459"; repClass "LTR"; repEnd "4204"; repFamily "ERVL"; repLeft "3833"; repStart "-1022"; chr7 rmsk exon 139114381 139116488 6179 - . gene_id "ERV316A3_7q34b"; transcript_id "ERV316A3_7q34b"; locus "ERV316A3_7q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1459"; repClass "LTR"; repEnd "3692"; repFamily "ERVL"; repLeft "1600"; repStart "-1534"; chr7 rmsk exon 139117324 139117916 1641 - . gene_id "ERV316A3_7q34b"; transcript_id "ERV316A3_7q34b"; locus "ERV316A3_7q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1459"; repClass "LTR"; repEnd "1535"; repFamily "ERVL"; repLeft "913"; repStart "-3691"; ### HERVH_7q34a ### chr7 rmsk gene 139461465 139465412 . + . gene_id "HERVH_7q34a"; transcript_id "HERVH_7q34a"; locus "HERVH_7q34a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0671"; model_cov "4045"; model_pct "52.4"; chr7 rmsk exon 139461465 139461863 2414 + . gene_id "HERVH_7q34a"; transcript_id "HERVH_7q34a"; locus "HERVH_7q34a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0671"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 139461864 139464526 12777 + . gene_id "HERVH_7q34a"; transcript_id "HERVH_7q34a"; locus "HERVH_7q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0671"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr7 rmsk exon 139464527 139465412 6057 + . gene_id "HERVH_7q34a"; transcript_id "HERVH_7q34a"; locus "HERVH_7q34a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0671"; repClass "LTR"; repEnd "5632"; repFamily "ERV1"; repLeft "-2081"; repStart "4416"; ### HERVH_7q34b ### chr7 rmsk gene 139465719 139467404 . + . gene_id "HERVH_7q34b"; transcript_id "HERVH_7q34b"; locus "HERVH_7q34b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0672"; model_cov "1573"; model_pct "20.4"; chr7 rmsk exon 139465719 139466471 6057 + . gene_id "HERVH_7q34b"; transcript_id "HERVH_7q34b"; locus "HERVH_7q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0672"; repClass "LTR"; repEnd "4944"; repFamily "ERV1"; repLeft "-2769"; repStart "4196"; chr7 rmsk exon 139466439 139466703 1400 + . gene_id "HERVH_7q34b"; transcript_id "HERVH_7q34b"; locus "HERVH_7q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0672"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr7 rmsk exon 139466697 139467289 3413 + . gene_id "HERVH_7q34b"; transcript_id "HERVH_7q34b"; locus "HERVH_7q34b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0672"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr7 rmsk exon 139467290 139467404 1935 + . gene_id "HERVH_7q34b"; transcript_id "HERVH_7q34b"; locus "HERVH_7q34b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0672"; repClass "LTR"; repEnd "163"; repFamily "ERV1"; repLeft "-287"; repStart "1"; ### ERVLE_7q34a ### chr7 rmsk gene 140290502 140295513 . - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1936"; model_cov "1640"; model_pct "28.9"; chr7 rmsk exon 140290502 140291013 3019 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "5175"; repStart "-23"; chr7 rmsk exon 140291314 140291428 3019 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "5065"; repStart "-493"; chr7 rmsk exon 140291744 140291947 3019 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "5064"; repFamily "ERVL"; repLeft "4859"; repStart "-603"; chr7 rmsk exon 140292258 140292506 3019 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "4858"; repFamily "ERVL"; repLeft "4612"; repStart "-809"; chr7 rmsk exon 140294311 140294910 2778 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "4596"; repFamily "ERVL"; repLeft "3985"; repStart "-1071"; chr7 rmsk exon 140294911 140295513 2049 - . gene_id "ERVLE_7q34a"; transcript_id "ERVLE_7q34a"; locus "ERVLE_7q34a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1936"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERV3_7q34b ### chr7 rmsk gene 140655523 140662300 . + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0034"; model_cov "5420"; model_pct "64.3"; chr7 rmsk exon 140655523 140655607 324 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "472"; chr7 rmsk exon 140655609 140657702 9143 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "2050"; repFamily "ERV1"; repLeft "-6376"; repStart "1"; chr7 rmsk exon 140657985 140659540 18660 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "3575"; repFamily "ERV1"; repLeft "-4851"; repStart "2039"; chr7 rmsk exon 140659848 140660845 18660 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "4537"; repFamily "ERV1"; repLeft "-3889"; repStart "3576"; chr7 rmsk exon 140661137 140661930 18660 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "5327"; repFamily "ERV1"; repLeft "-3099"; repStart "4538"; chr7 rmsk exon 140662206 140662300 18660 + . gene_id "HERV3_7q34b"; transcript_id "HERV3_7q34b"; locus "HERV3_7q34b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0034"; repClass "LTR"; repEnd "5413"; repFamily "ERV1"; repLeft "-3013"; repStart "5328"; ### HERV3_7q34c ### chr7 rmsk gene 140666107 140669521 . + . gene_id "HERV3_7q34c"; transcript_id "HERV3_7q34c"; locus "HERV3_7q34c"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0035"; model_cov "2948"; model_pct "35.0"; chr7 rmsk exon 140666107 140666575 3353 + . gene_id "HERV3_7q34c"; transcript_id "HERV3_7q34c"; locus "HERV3_7q34c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0035"; repClass "LTR"; repEnd "5892"; repFamily "ERV1"; repLeft "-2534"; repStart "5424"; chr7 rmsk exon 140666628 140668984 9514 + . gene_id "HERV3_7q34c"; transcript_id "HERV3_7q34c"; locus "HERV3_7q34c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0035"; repClass "LTR"; repEnd "8425"; repFamily "ERV1"; repLeft "-1"; repStart "5945"; chr7 rmsk exon 140668986 140669521 1952 + . gene_id "HERV3_7q34c"; transcript_id "HERV3_7q34c"; locus "HERV3_7q34c"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0035"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_7q34c ### chr7 rmsk gene 140937326 140938764 . + . gene_id "ERV316A3_7q34c"; transcript_id "ERV316A3_7q34c"; locus "ERV316A3_7q34c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1461"; model_cov "806"; model_pct "15.4"; chr7 rmsk exon 140937326 140937728 1663 + . gene_id "ERV316A3_7q34c"; transcript_id "ERV316A3_7q34c"; locus "ERV316A3_7q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1461"; repClass "LTR"; repEnd "3420"; repFamily "ERVL"; repLeft "-1806"; repStart "3016"; chr7 rmsk exon 140938085 140938433 1663 + . gene_id "ERV316A3_7q34c"; transcript_id "ERV316A3_7q34c"; locus "ERV316A3_7q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1461"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1436"; repStart "3421"; chr7 rmsk exon 140938727 140938764 1663 + . gene_id "ERV316A3_7q34c"; transcript_id "ERV316A3_7q34c"; locus "ERV316A3_7q34c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1461"; repClass "LTR"; repEnd "3824"; repFamily "ERVL"; repLeft "-1402"; repStart "3791"; ### ERVLB4_7q34b ### chr7 rmsk gene 140938765 140941905 . + . gene_id "ERVLB4_7q34b"; transcript_id "ERVLB4_7q34b"; locus "ERVLB4_7q34b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0859"; model_cov "2231"; model_pct "39.0"; chr7 rmsk exon 140938765 140939220 2583 + . gene_id "ERVLB4_7q34b"; transcript_id "ERVLB4_7q34b"; locus "ERVLB4_7q34b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0859"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-89"; repStart "1"; chr7 rmsk exon 140939301 140939883 12709 + . gene_id "ERVLB4_7q34b"; transcript_id "ERVLB4_7q34b"; locus "ERVLB4_7q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0859"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "-1650"; repStart "3482"; chr7 rmsk exon 140940241 140941829 12709 + . gene_id "ERVLB4_7q34b"; transcript_id "ERVLB4_7q34b"; locus "ERVLB4_7q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0859"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4065"; chr7 rmsk exon 140941830 140941905 410 + . gene_id "ERVLB4_7q34b"; transcript_id "ERVLB4_7q34b"; locus "ERVLB4_7q34b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0859"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "-481"; repStart "1"; ### ERVLE_7q34b ### chr7 rmsk gene 141540948 141542729 . + . gene_id "ERVLE_7q34b"; transcript_id "ERVLE_7q34b"; locus "ERVLE_7q34b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1939"; model_cov "637"; model_pct "11.2"; chr7 rmsk exon 141540948 141541353 921 + . gene_id "ERVLE_7q34b"; transcript_id "ERVLE_7q34b"; locus "ERVLE_7q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1939"; repClass "LTR"; repEnd "4763"; repFamily "ERVL"; repLeft "-904"; repStart "4336"; chr7 rmsk exon 141542525 141542729 529 + . gene_id "ERVLE_7q34b"; transcript_id "ERVLE_7q34b"; locus "ERVLE_7q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1939"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "-522"; repStart "4935"; ### HERVH_7q34c ### chr7 rmsk gene 141578076 141584442 . - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0673"; model_cov "5613"; model_pct "72.8"; chr7 rmsk exon 141578076 141578475 2728 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 141578476 141578866 2315 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 141578867 141579095 1400 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5590"; repStart "-1894"; chr7 rmsk exon 141579087 141581162 7558 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3140"; repStart "-2564"; chr7 rmsk exon 141581157 141584040 13495 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 141584043 141584442 2611 - . gene_id "HERVH_7q34c"; transcript_id "HERVH_7q34c"; locus "HERVH_7q34c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0673"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML2_7q34 ### chr7 rmsk gene 141752118 141756138 . - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0060"; model_cov "3914"; model_pct "51.9"; chr7 rmsk exon 141752118 141755274 25017 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "3918"; repFamily "ERVK"; repLeft "743"; repStart "-3618"; chr7 rmsk exon 141755372 141756103 5407 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "2"; repStart "-6795"; chr7 rmsk exon 141756105 141756138 282 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "969"; repStart "0"; ### LTR57_7q34 ### chr7 rmsk gene 141842151 141848230 . + . gene_id "LTR57_7q34"; transcript_id "LTR57_7q34"; locus "LTR57_7q34"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0089"; model_cov "5342"; model_pct "100.0"; chr7 rmsk exon 141842151 141842615 2326 + . gene_id "LTR57_7q34"; transcript_id "LTR57_7q34"; locus "LTR57_7q34"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0089"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 141842616 141847857 30770 + . gene_id "LTR57_7q34"; transcript_id "LTR57_7q34"; locus "LTR57_7q34"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0089"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 141847860 141848230 2345 + . gene_id "LTR57_7q34"; transcript_id "LTR57_7q34"; locus "LTR57_7q34"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0089"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "-37"; repStart "3"; ### PABLB_7q34 ### chr7 rmsk gene 142692316 142693634 . - . gene_id "PABLB_7q34"; transcript_id "PABLB_7q34"; locus "PABLB_7q34"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0056"; model_cov "1172"; model_pct "16.5"; chr7 rmsk exon 142692316 142692763 602 - . gene_id "PABLB_7q34"; transcript_id "PABLB_7q34"; locus "PABLB_7q34"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0056"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "4699"; repStart "-1964"; chr7 rmsk exon 142693244 142693634 378 - . gene_id "PABLB_7q34"; transcript_id "PABLB_7q34"; locus "PABLB_7q34"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0056"; repClass "LTR"; repEnd "3156"; repFamily "ERV1"; repLeft "2443"; repStart "-3966"; ### MER41_7q34b ### chr7 rmsk gene 142703799 142708967 . + . gene_id "MER41_7q34b"; transcript_id "MER41_7q34b"; locus "MER41_7q34b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0285"; model_cov "4605"; model_pct "77.4"; chr7 rmsk exon 142703799 142704340 3817 + . gene_id "MER41_7q34b"; transcript_id "MER41_7q34b"; locus "MER41_7q34b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0285"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr7 rmsk exon 142704426 142705078 3730 + . gene_id "MER41_7q34b"; transcript_id "MER41_7q34b"; locus "MER41_7q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0285"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "-5301"; repStart "1"; chr7 rmsk exon 142705072 142708422 7947 + . gene_id "MER41_7q34b"; transcript_id "MER41_7q34b"; locus "MER41_7q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0285"; repClass "LTR"; repEnd "5493"; repFamily "ERV1"; repLeft "-453"; repStart "1532"; chr7 rmsk exon 142708423 142708967 3883 + . gene_id "MER41_7q34b"; transcript_id "MER41_7q34b"; locus "MER41_7q34b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0285"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7q34c ### chr7 rmsk gene 142741189 142742810 . + . gene_id "ERVLB4_7q34c"; transcript_id "ERVLB4_7q34c"; locus "ERVLB4_7q34c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0860"; model_cov "859"; model_pct "15.0"; chr7 rmsk exon 142741189 142741796 769 + . gene_id "ERVLB4_7q34c"; transcript_id "ERVLB4_7q34c"; locus "ERVLB4_7q34c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0860"; repClass "LTR"; repEnd "3229"; repFamily "ERVL"; repLeft "-2485"; repStart "2497"; chr7 rmsk exon 142742682 142742810 509 + . gene_id "ERVLB4_7q34c"; transcript_id "ERVLB4_7q34c"; locus "ERVLB4_7q34c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0860"; repClass "LTR"; repEnd "3808"; repFamily "ERVL"; repLeft "-1906"; repStart "3681"; ### ERVLE_7q34c ### chr7 rmsk gene 142840535 142841733 . + . gene_id "ERVLE_7q34c"; transcript_id "ERVLE_7q34c"; locus "ERVLE_7q34c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1945"; model_cov "1171"; model_pct "20.7"; chr7 rmsk exon 142840535 142841119 835 + . gene_id "ERVLE_7q34c"; transcript_id "ERVLE_7q34c"; locus "ERVLE_7q34c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1945"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4034"; chr7 rmsk exon 142841257 142841733 1159 + . gene_id "ERVLE_7q34c"; transcript_id "ERVLE_7q34c"; locus "ERVLE_7q34c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1945"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "-383"; repStart "4801"; ### ERV316A3_7q34d ### chr7 rmsk gene 143013149 143015161 . - . gene_id "ERV316A3_7q34d"; transcript_id "ERV316A3_7q34d"; locus "ERV316A3_7q34d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1462"; model_cov "1605"; model_pct "30.7"; chr7 rmsk exon 143013149 143014748 2358 - . gene_id "ERV316A3_7q34d"; transcript_id "ERV316A3_7q34d"; locus "ERV316A3_7q34d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1462"; repClass "LTR"; repEnd "1936"; repFamily "ERVL"; repLeft "331"; repStart "-3290"; chr7 rmsk exon 143015019 143015161 586 - . gene_id "ERV316A3_7q34d"; transcript_id "ERV316A3_7q34d"; locus "ERV316A3_7q34d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1462"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "305"; repStart "-3"; ### HERVH_7q34d ### chr7 rmsk gene 143105117 143110504 . + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0674"; model_cov "4663"; model_pct "60.5"; chr7 rmsk exon 143105117 143105505 2917 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 143105506 143105988 1883 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr7 rmsk exon 143106011 143108058 12900 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "800"; chr7 rmsk exon 143108059 143109320 4144 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4416"; chr7 rmsk exon 143109312 143109569 1594 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "6014"; repFamily "ERV1"; repLeft "-1699"; repStart "5757"; chr7 rmsk exon 143109565 143110124 3537 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr7 rmsk exon 143110125 143110504 1769 + . gene_id "HERVH_7q34d"; transcript_id "HERVH_7q34d"; locus "HERVH_7q34d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0674"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "15"; ### MER101_7q34 ### chr7 rmsk gene 143120533 143124752 . + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; category "internal"; intModel "MER101-int"; locid "MER101-int_0215"; model_cov "1491"; model_pct "22.5"; chr7 rmsk exon 143120533 143120639 297 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "2194"; repFamily "ERV1"; repLeft "-4445"; repStart "2082"; chr7 rmsk exon 143120622 143120808 1284 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "1341"; repFamily "ERV1"; repLeft "-5298"; repStart "1153"; chr7 rmsk exon 143121406 143121498 1284 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "1442"; repFamily "ERV1"; repLeft "-5197"; repStart "1342"; chr7 rmsk exon 143121514 143121736 2154 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "1817"; repFamily "ERV1"; repLeft "-4822"; repStart "1598"; chr7 rmsk exon 143122479 143122701 2154 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "2035"; repFamily "ERV1"; repLeft "-4604"; repStart "1818"; chr7 rmsk exon 143124316 143124752 959 + . gene_id "MER101_7q34"; transcript_id "MER101_7q34"; locus "MER101_7q34"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0215"; repClass "LTR"; repEnd "3962"; repFamily "ERV1"; repLeft "-2677"; repStart "3307"; ### ERVLE_7q34d ### chr7 rmsk gene 143154803 143160197 . - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1946"; model_cov "3513"; model_pct "62.0"; chr7 rmsk exon 143154803 143155356 1183 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "4910"; repFamily "ERVL"; repLeft "4363"; repStart "-757"; chr7 rmsk exon 143155381 143155511 418 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "4306"; repFamily "ERVL"; repLeft "4172"; repStart "-1361"; chr7 rmsk exon 143155670 143156162 1024 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "3209"; repStart "-1946"; chr7 rmsk exon 143157090 143158514 2591 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "3216"; repFamily "ERVL"; repLeft "1709"; repStart "-2451"; chr7 rmsk exon 143158838 143159611 2591 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "2439"; repFamily "ERVL"; repLeft "1642"; repStart "-3228"; chr7 rmsk exon 143160177 143160197 417 - . gene_id "ERVLE_7q34d"; transcript_id "ERVLE_7q34d"; locus "ERVLE_7q34d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1946"; repClass "LTR"; repEnd "1411"; repFamily "ERVL"; repLeft "1395"; repStart "-4256"; ### ERVLE_7q35a ### chr7 rmsk gene 143451460 143452028 . - . gene_id "ERVLE_7q35a"; transcript_id "ERVLE_7q35a"; locus "ERVLE_7q35a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1947"; model_cov "577"; model_pct "10.2"; chr7 rmsk exon 143451460 143452028 1879 - . gene_id "ERVLE_7q35a"; transcript_id "ERVLE_7q35a"; locus "ERVLE_7q35a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1947"; repClass "LTR"; repEnd "851"; repFamily "ERVL"; repLeft "274"; repStart "-4816"; ### ERVLE_7q35b ### chr7 rmsk gene 143452046 143452782 . + . gene_id "ERVLE_7q35b"; transcript_id "ERVLE_7q35b"; locus "ERVLE_7q35b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1948"; model_cov "762"; model_pct "13.4"; chr7 rmsk exon 143452046 143452782 1180 + . gene_id "ERVLE_7q35b"; transcript_id "ERVLE_7q35b"; locus "ERVLE_7q35b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1948"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "-392"; repStart "4513"; ### HERVH_7q35a ### chr7 rmsk gene 143537279 143542613 . - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0675"; model_cov "4914"; model_pct "63.7"; chr7 rmsk exon 143537279 143537666 2091 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-46"; chr7 rmsk exon 143537667 143538043 2375 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr7 rmsk exon 143538044 143538258 1193 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 143538260 143538919 4028 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr7 rmsk exon 143538922 143539420 3139 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 143539411 143539560 913 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 143539540 143542506 19626 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 143542507 143542613 844 - . gene_id "HERVH_7q35a"; transcript_id "HERVH_7q35a"; locus "HERVH_7q35a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0675"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "344"; repStart "0"; ### HERVH_7q35b ### chr7 rmsk gene 143786848 143792193 . + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0676"; model_cov "4914"; model_pct "63.7"; chr7 rmsk exon 143786848 143786954 844 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr7 rmsk exon 143786955 143789926 19601 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr7 rmsk exon 143789906 143790055 938 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr7 rmsk exon 143790046 143790544 3159 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr7 rmsk exon 143790547 143791206 4030 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr7 rmsk exon 143791208 143791422 1230 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr7 rmsk exon 143791423 143791799 2385 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr7 rmsk exon 143791800 143792193 2109 + . gene_id "HERVH_7q35b"; transcript_id "HERVH_7q35b"; locus "HERVH_7q35b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0676"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### MER41_7q35 ### chr7 rmsk gene 144464665 144465750 . + . gene_id "MER41_7q35"; transcript_id "MER41_7q35"; locus "MER41_7q35"; category "internal"; intModel "MER41-int"; locid "MER41-int_0286"; model_cov "1828"; model_pct "30.7"; chr7 rmsk exon 144464665 144465402 3690 + . gene_id "MER41_7q35"; transcript_id "MER41_7q35"; locus "MER41_7q35"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0286"; repClass "LTR"; repEnd "167"; repFamily "ERV1"; repLeft "-5779"; repStart "-1303"; chr7 rmsk exon 144465398 144465750 1852 + . gene_id "MER41_7q35"; transcript_id "MER41_7q35"; locus "MER41_7q35"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0286"; repClass "LTR"; repEnd "757"; repFamily "ERV1"; repLeft "-5189"; repStart "399"; ### HERVL40_7q35 ### chr7 rmsk gene 144791302 144793570 . + . gene_id "HERVL40_7q35"; transcript_id "HERVL40_7q35"; locus "HERVL40_7q35"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0224"; model_cov "1800"; model_pct "32.5"; chr7 rmsk exon 144791302 144793120 2650 + . gene_id "HERVL40_7q35"; transcript_id "HERVL40_7q35"; locus "HERVL40_7q35"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0224"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-2254"; repStart "1476"; chr7 rmsk exon 144793135 144793570 1376 + . gene_id "HERVL40_7q35"; transcript_id "HERVL40_7q35"; locus "HERVL40_7q35"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0224"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_7q35c ### chr7 rmsk gene 144935896 144937389 . - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_1952"; model_cov "890"; model_pct "15.7"; chr7 rmsk exon 144935896 144936018 823 - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1952"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "195"; repStart "-344"; chr7 rmsk exon 144936278 144936400 349 - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_1952"; repClass "LTR"; repEnd "141"; repFamily "ERVL"; repLeft "1"; repStart "-522"; chr7 rmsk exon 144936442 144936664 663 - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1952"; repClass "LTR"; repEnd "3880"; repFamily "ERVL"; repLeft "3653"; repStart "-1787"; chr7 rmsk exon 144936660 144937056 667 - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1952"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "3054"; repStart "-2078"; chr7 rmsk exon 144937271 144937389 390 - . gene_id "ERVLE_7q35c"; transcript_id "ERVLE_7q35c"; locus "ERVLE_7q35c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1952"; repClass "LTR"; repEnd "900"; repFamily "ERVL"; repLeft "772"; repStart "-4767"; ### ERV316A3_7q35a ### chr7 rmsk gene 144975742 144977674 . + . gene_id "ERV316A3_7q35a"; transcript_id "ERV316A3_7q35a"; locus "ERV316A3_7q35a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1463"; model_cov "1974"; model_pct "37.8"; chr7 rmsk exon 144975742 144976432 1720 + . gene_id "ERV316A3_7q35a"; transcript_id "ERV316A3_7q35a"; locus "ERV316A3_7q35a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1463"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "-1677"; repStart "2837"; chr7 rmsk exon 144976425 144977674 3508 + . gene_id "ERV316A3_7q35a"; transcript_id "ERV316A3_7q35a"; locus "ERV316A3_7q35a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1463"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-197"; repStart "3767"; ### ERV316A3_7q35b ### chr7 rmsk gene 145122385 145124984 . - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1464"; model_cov "812"; model_pct "15.5"; chr7 rmsk exon 145122385 145122638 554 - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1464"; repClass "LTR"; repEnd "4910"; repFamily "ERVL"; repLeft "4653"; repStart "-316"; chr7 rmsk exon 145122655 145122733 290 - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1464"; repClass "LTR"; repEnd "4591"; repFamily "ERVL"; repLeft "4510"; repStart "-635"; chr7 rmsk exon 145123797 145124046 1033 - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1464"; repClass "LTR"; repEnd "4043"; repFamily "ERVL"; repLeft "3811"; repStart "-1183"; chr7 rmsk exon 145124440 145124573 1033 - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1464"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "3673"; repStart "-1416"; chr7 rmsk exon 145124885 145124984 328 - . gene_id "ERV316A3_7q35b"; transcript_id "ERV316A3_7q35b"; locus "ERV316A3_7q35b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1464"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "3511"; repStart "-1610"; ### ERVLE_7q35d ### chr7 rmsk gene 145187419 145188369 . - . gene_id "ERVLE_7q35d"; transcript_id "ERVLE_7q35d"; locus "ERVLE_7q35d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1954"; model_cov "953"; model_pct "16.8"; chr7 rmsk exon 145187419 145188119 1689 - . gene_id "ERVLE_7q35d"; transcript_id "ERVLE_7q35d"; locus "ERVLE_7q35d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1954"; repClass "LTR"; repEnd "2859"; repFamily "ERVL"; repLeft "2132"; repStart "-2808"; chr7 rmsk exon 145188198 145188369 370 - . gene_id "ERVLE_7q35d"; transcript_id "ERVLE_7q35d"; locus "ERVLE_7q35d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1954"; repClass "LTR"; repEnd "2050"; repFamily "ERVL"; repLeft "1824"; repStart "-3617"; ### ERVLE_7q35e ### chr7 rmsk gene 145454096 145455032 . + . gene_id "ERVLE_7q35e"; transcript_id "ERVLE_7q35e"; locus "ERVLE_7q35e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1955"; model_cov "812"; model_pct "14.3"; chr7 rmsk exon 145454096 145454328 414 + . gene_id "ERVLE_7q35e"; transcript_id "ERVLE_7q35e"; locus "ERVLE_7q35e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1955"; repClass "LTR"; repEnd "3779"; repFamily "ERVL"; repLeft "-1888"; repStart "3519"; chr7 rmsk exon 145454517 145455032 480 + . gene_id "ERVLE_7q35e"; transcript_id "ERVLE_7q35e"; locus "ERVLE_7q35e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1955"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "-702"; repStart "4413"; ### ERVLE_7q35f ### chr7 rmsk gene 145511764 145514612 . - . gene_id "ERVLE_7q35f"; transcript_id "ERVLE_7q35f"; locus "ERVLE_7q35f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1957"; model_cov "2615"; model_pct "46.1"; chr7 rmsk exon 145511764 145512373 2268 - . gene_id "ERVLE_7q35f"; transcript_id "ERVLE_7q35f"; locus "ERVLE_7q35f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1957"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "4746"; repStart "-306"; chr7 rmsk exon 145512428 145512775 2268 - . gene_id "ERVLE_7q35f"; transcript_id "ERVLE_7q35f"; locus "ERVLE_7q35f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1957"; repClass "LTR"; repEnd "4745"; repFamily "ERVL"; repLeft "4402"; repStart "-922"; chr7 rmsk exon 145512926 145514612 3343 - . gene_id "ERVLE_7q35f"; transcript_id "ERVLE_7q35f"; locus "ERVLE_7q35f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1957"; repClass "LTR"; repEnd "4071"; repFamily "ERVL"; repLeft "2414"; repStart "-1596"; ### ERVLE_7q35g ### chr7 rmsk gene 145591204 145595304 . + . gene_id "ERVLE_7q35g"; transcript_id "ERVLE_7q35g"; locus "ERVLE_7q35g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1958"; model_cov "2442"; model_pct "43.1"; chr7 rmsk exon 145591204 145592393 3082 + . gene_id "ERVLE_7q35g"; transcript_id "ERVLE_7q35g"; locus "ERVLE_7q35g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1958"; repClass "LTR"; repEnd "3493"; repFamily "ERVL"; repLeft "-2174"; repStart "2297"; chr7 rmsk exon 145593609 145593723 3370 + . gene_id "ERVLE_7q35g"; transcript_id "ERVLE_7q35g"; locus "ERVLE_7q35g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1958"; repClass "LTR"; repEnd "3607"; repFamily "ERVL"; repLeft "-2060"; repStart "3490"; chr7 rmsk exon 145594205 145595304 3370 + . gene_id "ERVLE_7q35g"; transcript_id "ERVLE_7q35g"; locus "ERVLE_7q35g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1958"; repClass "LTR"; repEnd "4737"; repFamily "ERVL"; repLeft "-930"; repStart "3608"; ### ERV316A3_7q35c ### chr7 rmsk gene 145685191 145686162 . + . gene_id "ERV316A3_7q35c"; transcript_id "ERV316A3_7q35c"; locus "ERV316A3_7q35c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1466"; model_cov "880"; model_pct "16.8"; chr7 rmsk exon 145685191 145685916 2043 + . gene_id "ERV316A3_7q35c"; transcript_id "ERV316A3_7q35c"; locus "ERV316A3_7q35c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1466"; repClass "LTR"; repEnd "4667"; repFamily "ERVL"; repLeft "-559"; repStart "3920"; chr7 rmsk exon 145686030 145686162 434 + . gene_id "ERV316A3_7q35c"; transcript_id "ERV316A3_7q35c"; locus "ERV316A3_7q35c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1466"; repClass "LTR"; repEnd "4981"; repFamily "ERVL"; repLeft "-245"; repStart "4848"; ### MER61_7q35 ### chr7 rmsk gene 145686833 145692990 . + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0222"; model_cov "4908"; model_pct "94.1"; chr7 rmsk exon 145686833 145687134 1238 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0222"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 145687135 145687838 3827 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0222"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "-4514"; repStart "2"; chr7 rmsk exon 145688192 145688297 3827 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0222"; repClass "LTR"; repEnd "814"; repFamily "ERV1"; repLeft "-4403"; repStart "704"; chr7 rmsk exon 145688293 145688580 1659 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0222"; repClass "LTR"; repEnd "1272"; repFamily "ERV1"; repLeft "-3945"; repStart "972"; chr7 rmsk exon 145688635 145689194 24555 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0222"; repClass "LTR"; repEnd "1988"; repFamily "ERV1"; repLeft "-3229"; repStart "1419"; chr7 rmsk exon 145689492 145692680 24555 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0222"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1989"; chr7 rmsk exon 145692681 145692990 1444 + . gene_id "MER61_7q35"; transcript_id "MER61_7q35"; locus "MER61_7q35"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0222"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_7q35 ### chr7 rmsk gene 145749690 145753381 . - . gene_id "HUERSP2_7q35"; transcript_id "HUERSP2_7q35"; locus "HUERSP2_7q35"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0069"; model_cov "2771"; model_pct "89.7"; chr7 rmsk exon 145749690 145749991 1676 - . gene_id "HUERSP2_7q35"; transcript_id "HUERSP2_7q35"; locus "HUERSP2_7q35"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0069"; repClass "LTR"; repEnd "342"; repFamily "ERV1"; repLeft "41"; repStart "-495"; chr7 rmsk exon 145749992 145750035 13846 - . gene_id "HUERSP2_7q35"; transcript_id "HUERSP2_7q35"; locus "HUERSP2_7q35"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0069"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "3050"; repStart "-3"; chr7 rmsk exon 145750338 145752675 13846 - . gene_id "HUERSP2_7q35"; transcript_id "HUERSP2_7q35"; locus "HUERSP2_7q35"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0069"; repClass "LTR"; repEnd "3049"; repFamily "ERV1"; repLeft "722"; repStart "-39"; chr7 rmsk exon 145752986 145753381 13846 - . gene_id "HUERSP2_7q35"; transcript_id "HUERSP2_7q35"; locus "HUERSP2_7q35"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0069"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "312"; repStart "-2367"; ### ERVLE_7q35h ### chr7 rmsk gene 145785997 145787226 . - . gene_id "ERVLE_7q35h"; transcript_id "ERVLE_7q35h"; locus "ERVLE_7q35h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1959"; model_cov "817"; model_pct "14.4"; chr7 rmsk exon 145785997 145786284 346 - . gene_id "ERVLE_7q35h"; transcript_id "ERVLE_7q35h"; locus "ERVLE_7q35h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1959"; repClass "LTR"; repEnd "2576"; repFamily "ERVL"; repLeft "2281"; repStart "-3091"; chr7 rmsk exon 145786718 145787226 1427 - . gene_id "ERVLE_7q35h"; transcript_id "ERVLE_7q35h"; locus "ERVLE_7q35h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1959"; repClass "LTR"; repEnd "2257"; repFamily "ERVL"; repLeft "1735"; repStart "-3410"; ### ERVLE_7q35i ### chr7 rmsk gene 145793620 145794928 . - . gene_id "ERVLE_7q35i"; transcript_id "ERVLE_7q35i"; locus "ERVLE_7q35i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1960"; model_cov "1304"; model_pct "23.0"; chr7 rmsk exon 145793620 145794660 1942 - . gene_id "ERVLE_7q35i"; transcript_id "ERVLE_7q35i"; locus "ERVLE_7q35i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1960"; repClass "LTR"; repEnd "1737"; repFamily "ERVL"; repLeft "682"; repStart "-3930"; chr7 rmsk exon 145794692 145794928 451 - . gene_id "ERVLE_7q35i"; transcript_id "ERVLE_7q35i"; locus "ERVLE_7q35i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1960"; repClass "LTR"; repEnd "623"; repFamily "ERVL"; repLeft "374"; repStart "-5044"; ### ERVLE_7q35j ### chr7 rmsk gene 145929430 145931118 . + . gene_id "ERVLE_7q35j"; transcript_id "ERVLE_7q35j"; locus "ERVLE_7q35j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1961"; model_cov "1472"; model_pct "26.0"; chr7 rmsk exon 145929430 145929588 328 + . gene_id "ERVLE_7q35j"; transcript_id "ERVLE_7q35j"; locus "ERVLE_7q35j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1961"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "-5060"; repStart "436"; chr7 rmsk exon 145929766 145930362 813 + . gene_id "ERVLE_7q35j"; transcript_id "ERVLE_7q35j"; locus "ERVLE_7q35j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1961"; repClass "LTR"; repEnd "1868"; repFamily "ERVL"; repLeft "-3799"; repStart "1278"; chr7 rmsk exon 145930419 145931118 1700 + . gene_id "ERVLE_7q35j"; transcript_id "ERVLE_7q35j"; locus "ERVLE_7q35j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1961"; repClass "LTR"; repEnd "2267"; repFamily "ERVL"; repLeft "-3400"; repStart "1556"; ### HERVP71A_7q35 ### chr7 rmsk gene 146050928 146058901 . - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0041"; model_cov "6529"; model_pct "86.0"; chr7 rmsk exon 146050928 146051510 3317 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 146051513 146053860 18673 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "7587"; repFamily "ERV1"; repLeft "5185"; repStart "-3"; chr7 rmsk exon 146054157 146055275 18673 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "4057"; repStart "-2406"; chr7 rmsk exon 146055265 146056523 7981 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "3020"; repFamily "ERV1"; repLeft "1605"; repStart "-4570"; chr7 rmsk exon 146056820 146058221 8106 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "1734"; repFamily "ERV1"; repLeft "247"; repStart "-5856"; chr7 rmsk exon 146058215 146058313 557 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "105"; repFamily "ERV1"; repLeft "7"; repStart "-7485"; chr7 rmsk exon 146058318 146058901 3463 - . gene_id "HERVP71A_7q35"; transcript_id "HERVP71A_7q35"; locus "HERVP71A_7q35"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0041"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_7q35c ### chr7 rmsk gene 146243819 146249225 . - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0679"; model_cov "4905"; model_pct "63.6"; chr7 rmsk exon 146243819 146244197 2347 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr7 rmsk exon 146244196 146244412 1331 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr7 rmsk exon 146244417 146245076 4495 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr7 rmsk exon 146245079 146245581 3414 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 146245572 146245719 862 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 146245714 146248812 16067 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr7 rmsk exon 146248815 146249225 2782 - . gene_id "HERVH_7q35c"; transcript_id "HERVH_7q35c"; locus "HERVH_7q35c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0679"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL18_7q35 ### chr7 rmsk gene 146503833 146510377 . - . gene_id "HERVL18_7q35"; transcript_id "HERVL18_7q35"; locus "HERVL18_7q35"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0088"; model_cov "6045"; model_pct "100.0"; chr7 rmsk exon 146503833 146504150 1200 - . gene_id "HERVL18_7q35"; transcript_id "HERVL18_7q35"; locus "HERVL18_7q35"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0088"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr7 rmsk exon 146504153 146510038 23909 - . gene_id "HERVL18_7q35"; transcript_id "HERVL18_7q35"; locus "HERVL18_7q35"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0088"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr7 rmsk exon 146510046 146510377 1239 - . gene_id "HERVL18_7q35"; transcript_id "HERVL18_7q35"; locus "HERVL18_7q35"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0088"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_7q36.1a ### chr7 rmsk gene 148309416 148315615 . - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0680"; model_cov "5632"; model_pct "73.0"; chr7 rmsk exon 148309416 148309826 2682 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7 rmsk exon 148309827 148310983 8447 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr7 rmsk exon 148310957 148311568 4406 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr7 rmsk exon 148311555 148311738 1273 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr7 rmsk exon 148311741 148312246 3353 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7 rmsk exon 148312237 148312386 968 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7 rmsk exon 148312366 148315203 15599 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7 rmsk exon 148315206 148315615 2796 - . gene_id "HERVH_7q36.1a"; transcript_id "HERVH_7q36.1a"; locus "HERVH_7q36.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0680"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_7q36.1a ### chr7 rmsk gene 148575970 148579927 . - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0736"; model_cov "1555"; model_pct "27.5"; chr7 rmsk exon 148575970 148576091 386 - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0736"; repClass "LTR"; repEnd "5570"; repFamily "ERVL"; repLeft "5439"; repStart "-84"; chr7 rmsk exon 148577896 148578172 1007 - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0736"; repClass "LTR"; repEnd "4767"; repFamily "ERVL"; repLeft "4480"; repStart "-887"; chr7 rmsk exon 148578478 148578986 1007 - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0736"; repClass "LTR"; repEnd "4169"; repFamily "ERVL"; repLeft "3628"; repStart "-1485"; chr7 rmsk exon 148578996 148579309 1189 - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0736"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "3326"; repStart "-1997"; chr7 rmsk exon 148579673 148579927 1189 - . gene_id "HERVL_7q36.1a"; transcript_id "HERVL_7q36.1a"; locus "HERVL_7q36.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0736"; repClass "LTR"; repEnd "3325"; repFamily "ERVL"; repLeft "3060"; repStart "-2329"; ### HERVL_7q36.1b ### chr7 rmsk gene 149051314 149058264 . + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0738"; model_cov "3439"; model_pct "60.8"; chr7 rmsk exon 149051314 149051752 3064 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr7 rmsk exon 149051753 149052280 11049 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "-5117"; repStart "1"; chr7 rmsk exon 149052619 149053123 11049 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-4616"; repStart "538"; chr7 rmsk exon 149053447 149053877 11049 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "1453"; repFamily "ERVL"; repLeft "-4201"; repStart "1039"; chr7 rmsk exon 149054310 149054573 1714 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "1633"; repFamily "ERVL"; repLeft "-4021"; repStart "1376"; chr7 rmsk exon 149054901 149055483 10901 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "4525"; repFamily "ERVL"; repLeft "-1129"; repStart "3919"; chr7 rmsk exon 149055792 149056391 10901 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "5102"; repFamily "ERVL"; repLeft "-552"; repStart "4526"; chr7 rmsk exon 149056683 149057025 9280 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "5425"; repFamily "ERVL"; repLeft "-229"; repStart "5103"; chr7 rmsk exon 149057331 149057567 9280 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5426"; chr7 rmsk exon 149057568 149057590 2622 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "23"; repFamily "ERVL"; repLeft "-421"; repStart "1"; chr7 rmsk exon 149057890 149058264 2622 + . gene_id "HERVL_7q36.1b"; transcript_id "HERVL_7q36.1b"; locus "HERVL_7q36.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0738"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "-48"; repStart "24"; ### MER101_7q36.1a ### chr7 rmsk gene 149319536 149324081 . + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0217"; model_cov "1326"; model_pct "20.0"; chr7 rmsk exon 149319536 149319965 2079 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0217"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 149320018 149320296 910 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0217"; repClass "LTR"; repEnd "2116"; repFamily "ERV1"; repLeft "-4523"; repStart "1826"; chr7 rmsk exon 149322283 149322845 1955 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0217"; repClass "LTR"; repEnd "2776"; repFamily "ERV1"; repLeft "-3863"; repStart "2221"; chr7 rmsk exon 149323292 149323584 1626 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0217"; repClass "LTR"; repEnd "3064"; repFamily "ERV1"; repLeft "-3575"; repStart "2773"; chr7 rmsk exon 149323885 149323904 1626 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0217"; repClass "LTR"; repEnd "3081"; repFamily "ERV1"; repLeft "-3558"; repStart "3065"; chr7 rmsk exon 149323913 149324081 2239 + . gene_id "MER101_7q36.1a"; transcript_id "MER101_7q36.1a"; locus "MER101_7q36.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0217"; repClass "LTR"; repEnd "3826"; repFamily "ERV1"; repLeft "-2813"; repStart "3652"; ### MER101_7q36.1b ### chr7 rmsk gene 149324390 149328287 . + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0218"; model_cov "2373"; model_pct "35.7"; chr7 rmsk exon 149324390 149326119 5633 + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0218"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-3647"; repStart "1541"; chr7 rmsk exon 149326421 149327060 5633 + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0218"; repClass "LTR"; repEnd "3680"; repFamily "ERV1"; repLeft "-2959"; repStart "2993"; chr7 rmsk exon 149327365 149327679 5633 + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0218"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "3681"; chr7 rmsk exon 149327847 149327898 1912 + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0218"; repClass "LTR"; repEnd "48"; repFamily "ERV1"; repLeft "-397"; repStart "2"; chr7 rmsk exon 149328211 149328287 1912 + . gene_id "MER101_7q36.1b"; transcript_id "MER101_7q36.1b"; locus "MER101_7q36.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0218"; repClass "LTR"; repEnd "79"; repFamily "ERV1"; repLeft "-366"; repStart "49"; ### LTR25_7q36.1 ### chr7 rmsk gene 149527865 149535145 . + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0065"; model_cov "7130"; model_pct "99.2"; chr7 rmsk exon 149527865 149529552 9178 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "1760"; repFamily "ERV1"; repLeft "-5428"; repStart "36"; chr7 rmsk exon 149529583 149531015 7735 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "5704"; repFamily "ERV1"; repLeft "-1484"; repStart "3352"; chr7 rmsk exon 149531004 149531205 1610 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "3051"; repFamily "ERV1"; repLeft "-4137"; repStart "3004"; chr7 rmsk exon 149531450 149531509 5652 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-3364"; repStart "3784"; chr7 rmsk exon 149531808 149532818 5652 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "4796"; repFamily "ERV1"; repLeft "-2392"; repStart "3825"; chr7 rmsk exon 149532820 149533047 11660 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "5405"; repFamily "ERV1"; repLeft "-1783"; repStart "5190"; chr7 rmsk exon 149533338 149535145 11660 + . gene_id "LTR25_7q36.1"; transcript_id "LTR25_7q36.1"; locus "LTR25_7q36.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0065"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "5406"; ### HERVIP10FH_7q36.1 ### chr7 rmsk gene 149568739 149570100 . + . gene_id "HERVIP10FH_7q36.1"; transcript_id "HERVIP10FH_7q36.1"; locus "HERVIP10FH_7q36.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0085"; model_cov "814"; model_pct "16.0"; chr7 rmsk exon 149568739 149569346 3500 + . gene_id "HERVIP10FH_7q36.1"; transcript_id "HERVIP10FH_7q36.1"; locus "HERVIP10FH_7q36.1"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0085"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 149569356 149570100 2249 + . gene_id "HERVIP10FH_7q36.1"; transcript_id "HERVIP10FH_7q36.1"; locus "HERVIP10FH_7q36.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0085"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-4260"; repStart "28"; ### HARLEQUIN_7q36.1 ### chr7 rmsk gene 149571228 149572691 . + . gene_id "HARLEQUIN_7q36.1"; transcript_id "HARLEQUIN_7q36.1"; locus "HARLEQUIN_7q36.1"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0105"; model_cov "1490"; model_pct "21.6"; chr7 rmsk exon 149571228 149572599 5081 + . gene_id "HARLEQUIN_7q36.1"; transcript_id "HARLEQUIN_7q36.1"; locus "HARLEQUIN_7q36.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0105"; repClass "LTR"; repEnd "3943"; repFamily "ERV1"; repLeft "-2953"; repStart "2551"; chr7 rmsk exon 149572595 149572691 428 + . gene_id "HARLEQUIN_7q36.1"; transcript_id "HARLEQUIN_7q36.1"; locus "HARLEQUIN_7q36.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0105"; repClass "LTR"; repEnd "6892"; repFamily "ERV1"; repLeft "-4"; repStart "6794"; ### ERVLE_7q36.1a ### chr7 rmsk gene 149585730 149586958 . - . gene_id "ERVLE_7q36.1a"; transcript_id "ERVLE_7q36.1a"; locus "ERVLE_7q36.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1965"; model_cov "730"; model_pct "12.9"; chr7 rmsk exon 149585730 149585923 424 - . gene_id "ERVLE_7q36.1a"; transcript_id "ERVLE_7q36.1a"; locus "ERVLE_7q36.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1965"; repClass "LTR"; repEnd "1917"; repFamily "ERVL"; repLeft "1714"; repStart "-3750"; chr7 rmsk exon 149586119 149586291 251 - . gene_id "ERVLE_7q36.1a"; transcript_id "ERVLE_7q36.1a"; locus "ERVLE_7q36.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1965"; repClass "LTR"; repEnd "1455"; repFamily "ERVL"; repLeft "1283"; repStart "-4212"; chr7 rmsk exon 149586297 149586416 667 - . gene_id "ERVLE_7q36.1a"; transcript_id "ERVLE_7q36.1a"; locus "ERVLE_7q36.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1965"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "1094"; repStart "-4453"; chr7 rmsk exon 149586720 149586958 667 - . gene_id "ERVLE_7q36.1a"; transcript_id "ERVLE_7q36.1a"; locus "ERVLE_7q36.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1965"; repClass "LTR"; repEnd "1093"; repFamily "ERVL"; repLeft "858"; repStart "-4574"; ### ERVLE_7q36.1b ### chr7 rmsk gene 149640474 149641418 . - . gene_id "ERVLE_7q36.1b"; transcript_id "ERVLE_7q36.1b"; locus "ERVLE_7q36.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1967"; model_cov "668"; model_pct "11.8"; chr7 rmsk exon 149640474 149640720 512 - . gene_id "ERVLE_7q36.1b"; transcript_id "ERVLE_7q36.1b"; locus "ERVLE_7q36.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1967"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "1152"; repStart "-4260"; chr7 rmsk exon 149641026 149641418 512 - . gene_id "ERVLE_7q36.1b"; transcript_id "ERVLE_7q36.1b"; locus "ERVLE_7q36.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1967"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "738"; repStart "-4516"; ### ERVLE_7q36.1c ### chr7 rmsk gene 149642969 149644517 . - . gene_id "ERVLE_7q36.1c"; transcript_id "ERVLE_7q36.1c"; locus "ERVLE_7q36.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1968"; model_cov "762"; model_pct "13.4"; chr7 rmsk exon 149642969 149643160 476 - . gene_id "ERVLE_7q36.1c"; transcript_id "ERVLE_7q36.1c"; locus "ERVLE_7q36.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1968"; repClass "LTR"; repEnd "3174"; repFamily "ERVL"; repLeft "2976"; repStart "-2493"; chr7 rmsk exon 149643281 149643479 411 - . gene_id "ERVLE_7q36.1c"; transcript_id "ERVLE_7q36.1c"; locus "ERVLE_7q36.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1968"; repClass "LTR"; repEnd "1922"; repFamily "ERVL"; repLeft "1714"; repStart "-3745"; chr7 rmsk exon 149644171 149644517 802 - . gene_id "ERVLE_7q36.1c"; transcript_id "ERVLE_7q36.1c"; locus "ERVLE_7q36.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1968"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "858"; repStart "-4453"; ### HML3_7q36.1a ### chr7 rmsk gene 149649026 149650666 . - . gene_id "HML3_7q36.1a"; transcript_id "HML3_7q36.1a"; locus "HML3_7q36.1a"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0128"; model_cov "1709"; model_pct "28.4"; chr7 rmsk exon 149649026 149650666 18146 - . gene_id "HML3_7q36.1a"; transcript_id "HML3_7q36.1a"; locus "HML3_7q36.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0128"; repClass "LTR"; repEnd "2501"; repFamily "ERVK"; repLeft "792"; repStart "-3520"; ### HML3_7q36.1b ### chr7 rmsk gene 149650724 149651977 . - . gene_id "HML3_7q36.1b"; transcript_id "HML3_7q36.1b"; locus "HML3_7q36.1b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0129"; model_cov "790"; model_pct "13.1"; chr7 rmsk exon 149650724 149651480 18146 - . gene_id "HML3_7q36.1b"; transcript_id "HML3_7q36.1b"; locus "HML3_7q36.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0129"; repClass "LTR"; repEnd "2501"; repFamily "ERVK"; repLeft "1711"; repStart "-3520"; chr7 rmsk exon 149651481 149651977 3936 - . gene_id "HML3_7q36.1b"; transcript_id "HML3_7q36.1b"; locus "HML3_7q36.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0129"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVW_7q36.1 ### chr7 rmsk gene 149671597 149677221 . + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0172"; model_cov "5912"; model_pct "68.5"; chr7 rmsk exon 149671597 149672078 3419 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "275"; chr7 rmsk exon 149672079 149672765 5041 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-7939"; repStart "2"; chr7 rmsk exon 149672937 149674224 9458 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "707"; chr7 rmsk exon 149674208 149676127 11320 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2430"; chr7 rmsk exon 149676121 149676159 326 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr7 rmsk exon 149676150 149676442 2433 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr7 rmsk exon 149676443 149677221 5412 + . gene_id "HERVW_7q36.1"; transcript_id "HERVW_7q36.1"; locus "HERVW_7q36.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0172"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_7q36.1d ### chr7 rmsk gene 149677246 149678048 . - . gene_id "ERVLE_7q36.1d"; transcript_id "ERVLE_7q36.1d"; locus "ERVLE_7q36.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1969"; model_cov "830"; model_pct "14.6"; chr7 rmsk exon 149677246 149678048 1030 - . gene_id "ERVLE_7q36.1d"; transcript_id "ERVLE_7q36.1d"; locus "ERVLE_7q36.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1969"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "2440"; repStart "-2397"; ### MER41_7q36.1 ### chr7 rmsk gene 149681756 149687599 . - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0287"; model_cov "4309"; model_pct "72.5"; chr7 rmsk exon 149681756 149682380 4181 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0287"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr7 rmsk exon 149682381 149683526 6599 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0287"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4788"; repStart "0"; chr7 rmsk exon 149683547 149685272 17846 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0287"; repClass "LTR"; repEnd "3440"; repFamily "ERV1"; repLeft "1676"; repStart "-2506"; chr7 rmsk exon 149685570 149686923 17846 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0287"; repClass "LTR"; repEnd "1675"; repFamily "ERV1"; repLeft "319"; repStart "-4271"; chr7 rmsk exon 149687214 149687253 17846 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0287"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "287"; repStart "-5628"; chr7 rmsk exon 149687254 149687599 2501 - . gene_id "MER41_7q36.1"; transcript_id "MER41_7q36.1"; locus "MER41_7q36.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0287"; repClass "LTR"; repEnd "350"; repFamily "ERV1"; repLeft "1"; repStart "-284"; ### HERVE_7q36.1 ### chr7 rmsk gene 150040118 150042015 . - . gene_id "HERVE_7q36.1"; transcript_id "HERVE_7q36.1"; locus "HERVE_7q36.1"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0065"; model_cov "1267"; model_pct "16.2"; chr7 rmsk exon 150040118 150040718 3971 - . gene_id "HERVE_7q36.1"; transcript_id "HERVE_7q36.1"; locus "HERVE_7q36.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0065"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "3249"; repStart "-3967"; chr7 rmsk exon 150040868 150041464 3912 - . gene_id "HERVE_7q36.1"; transcript_id "HERVE_7q36.1"; locus "HERVE_7q36.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0065"; repClass "LTR"; repEnd "3843"; repFamily "ERV1"; repLeft "3249"; repStart "-3970"; chr7 rmsk exon 150041939 150042015 464 - . gene_id "HERVE_7q36.1"; transcript_id "HERVE_7q36.1"; locus "HERVE_7q36.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0065"; repClass "LTR"; repEnd "3285"; repFamily "ERV1"; repLeft "3209"; repStart "-4528"; ### ERV316A3_7q36.1a ### chr7 rmsk gene 150257200 150259082 . + . gene_id "ERV316A3_7q36.1a"; transcript_id "ERV316A3_7q36.1a"; locus "ERV316A3_7q36.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1467"; model_cov "1825"; model_pct "34.9"; chr7 rmsk exon 150257200 150257383 496 + . gene_id "ERV316A3_7q36.1a"; transcript_id "ERV316A3_7q36.1a"; locus "ERV316A3_7q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1467"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-4746"; repStart "289"; chr7 rmsk exon 150257455 150257615 494 + . gene_id "ERV316A3_7q36.1a"; transcript_id "ERV316A3_7q36.1a"; locus "ERV316A3_7q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1467"; repClass "LTR"; repEnd "896"; repFamily "ERVL"; repLeft "-4330"; repStart "730"; chr7 rmsk exon 150257614 150259082 2978 + . gene_id "ERV316A3_7q36.1a"; transcript_id "ERV316A3_7q36.1a"; locus "ERV316A3_7q36.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1467"; repClass "LTR"; repEnd "2487"; repFamily "ERVL"; repLeft "-2739"; repStart "1019"; ### HERVH_7q36.1b ### chr7 rmsk gene 150307240 150313286 . + . gene_id "HERVH_7q36.1b"; transcript_id "HERVH_7q36.1b"; locus "HERVH_7q36.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0681"; model_cov "4514"; model_pct "58.5"; chr7 rmsk exon 150307240 150307703 3239 + . gene_id "HERVH_7q36.1b"; transcript_id "HERVH_7q36.1b"; locus "HERVH_7q36.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0681"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7 rmsk exon 150307704 150312283 11427 + . gene_id "HERVH_7q36.1b"; transcript_id "HERVH_7q36.1b"; locus "HERVH_7q36.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0681"; repClass "LTR"; repEnd "4432"; repFamily "ERV1"; repLeft "-3281"; repStart "1"; chr7 rmsk exon 150312680 150312756 254 + . gene_id "HERVH_7q36.1b"; transcript_id "HERVH_7q36.1b"; locus "HERVH_7q36.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0681"; repClass "LTR"; repEnd "7651"; repFamily "ERV1"; repLeft "-62"; repStart "7568"; chr7 rmsk exon 150312817 150313286 3759 + . gene_id "HERVH_7q36.1b"; transcript_id "HERVH_7q36.1b"; locus "HERVH_7q36.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0681"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7q36.1a ### chr7 rmsk gene 150458095 150461120 . - . gene_id "ERVLB4_7q36.1a"; transcript_id "ERVLB4_7q36.1a"; locus "ERVLB4_7q36.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0867"; model_cov "2589"; model_pct "45.3"; chr7 rmsk exon 150458095 150458574 1545 - . gene_id "ERVLB4_7q36.1a"; transcript_id "ERVLB4_7q36.1a"; locus "ERVLB4_7q36.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0867"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr7 rmsk exon 150458576 150461120 15949 - . gene_id "ERVLB4_7q36.1a"; transcript_id "ERVLB4_7q36.1a"; locus "ERVLB4_7q36.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0867"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "3124"; repStart "-1"; ### HERVK14C_7q36.1 ### chr7 rmsk gene 150561073 150565629 . - . gene_id "HERVK14C_7q36.1"; transcript_id "HERVK14C_7q36.1"; locus "HERVK14C_7q36.1"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0012"; model_cov "4021"; model_pct "54.1"; chr7 rmsk exon 150561073 150561601 1662 - . gene_id "HERVK14C_7q36.1"; transcript_id "HERVK14C_7q36.1"; locus "HERVK14C_7q36.1"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0012"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr7 rmsk exon 150561619 150565017 19059 - . gene_id "HERVK14C_7q36.1"; transcript_id "HERVK14C_7q36.1"; locus "HERVK14C_7q36.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0012"; repClass "LTR"; repEnd "7408"; repFamily "ERVK"; repLeft "4013"; repStart "-26"; chr7 rmsk exon 150564995 150565073 436 - . gene_id "HERVK14C_7q36.1"; transcript_id "HERVK14C_7q36.1"; locus "HERVK14C_7q36.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0012"; repClass "LTR"; repEnd "3900"; repFamily "ERVK"; repLeft "3844"; repStart "-3534"; chr7 rmsk exon 150565100 150565629 2707 - . gene_id "HERVK14C_7q36.1"; transcript_id "HERVK14C_7q36.1"; locus "HERVK14C_7q36.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0012"; repClass "LTR"; repEnd "1104"; repFamily "ERVK"; repLeft "534"; repStart "-6330"; ### HML6_7q36.1 ### chr7 rmsk gene 150582645 150585004 . + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0045"; model_cov "1589"; model_pct "22.1"; chr7 rmsk exon 150582645 150583136 3261 + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0045"; repClass "LTR"; repEnd "497"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr7 rmsk exon 150583410 150583592 513 + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0045"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "28"; chr7 rmsk exon 150583654 150583750 421 + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0045"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "-6563"; repStart "546"; chr7 rmsk exon 150583739 150584839 5735 + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0045"; repClass "LTR"; repEnd "2408"; repFamily "ERVK"; repLeft "-4794"; repStart "1280"; chr7 rmsk exon 150584843 150585004 556 + . gene_id "HML6_7q36.1"; transcript_id "HML6_7q36.1"; locus "HML6_7q36.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0045"; repClass "LTR"; repEnd "683"; repFamily "ERVK"; repLeft "-6519"; repStart "519"; ### MER34B_7q36.1 ### chr7 rmsk gene 150619449 150620902 . - . gene_id "MER34B_7q36.1"; transcript_id "MER34B_7q36.1"; locus "MER34B_7q36.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0145"; model_cov "822"; model_pct "15.3"; chr7 rmsk exon 150619449 150619993 993 - . gene_id "MER34B_7q36.1"; transcript_id "MER34B_7q36.1"; locus "MER34B_7q36.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0145"; repClass "LTR"; repEnd "1560"; repFamily "ERV1"; repLeft "982"; repStart "-3796"; chr7 rmsk exon 150620628 150620902 572 - . gene_id "MER34B_7q36.1"; transcript_id "MER34B_7q36.1"; locus "MER34B_7q36.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0145"; repClass "LTR"; repEnd "-584"; repFamily "ERV1"; repLeft "-828"; repStart "-5940"; ### ERV316A3_7q36.1b ### chr7 rmsk gene 150642257 150643344 . - . gene_id "ERV316A3_7q36.1b"; transcript_id "ERV316A3_7q36.1b"; locus "ERV316A3_7q36.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1469"; model_cov "858"; model_pct "16.4"; chr7 rmsk exon 150642257 150642723 1026 - . gene_id "ERV316A3_7q36.1b"; transcript_id "ERV316A3_7q36.1b"; locus "ERV316A3_7q36.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1469"; repClass "LTR"; repEnd "4016"; repFamily "ERVL"; repLeft "3494"; repStart "-1210"; chr7 rmsk exon 150643020 150643275 673 - . gene_id "ERV316A3_7q36.1b"; transcript_id "ERV316A3_7q36.1b"; locus "ERV316A3_7q36.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1469"; repClass "LTR"; repEnd "3493"; repFamily "ERVL"; repLeft "3224"; repStart "-1733"; chr7 rmsk exon 150643277 150643344 332 - . gene_id "ERV316A3_7q36.1b"; transcript_id "ERV316A3_7q36.1b"; locus "ERV316A3_7q36.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1469"; repClass "LTR"; repEnd "2883"; repFamily "ERVL"; repLeft "2816"; repStart "-2343"; ### HERV4_7q36.1 ### chr7 rmsk gene 150655056 150658080 . - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0067"; model_cov "1758"; model_pct "26.9"; chr7 rmsk exon 150655056 150655281 1206 - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0067"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "241"; repStart "0"; chr7 rmsk exon 150655438 150655652 1267 - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0067"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "1"; repStart "-232"; chr7 rmsk exon 150655654 150655785 603 - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0067"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "6406"; repStart "-2"; chr7 rmsk exon 150655970 150657356 11375 - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0067"; repClass "LTR"; repEnd "6079"; repFamily "ERV1"; repLeft "4720"; repStart "-460"; chr7 rmsk exon 150657813 150658080 11375 - . gene_id "HERV4_7q36.1"; transcript_id "HERV4_7q36.1"; locus "HERV4_7q36.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0067"; repClass "LTR"; repEnd "4719"; repFamily "ERV1"; repLeft "4451"; repStart "-1820"; ### ERVLE_7q36.1e ### chr7 rmsk gene 151291843 151294792 . - . gene_id "ERVLE_7q36.1e"; transcript_id "ERVLE_7q36.1e"; locus "ERVLE_7q36.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1972"; model_cov "1783"; model_pct "31.5"; chr7 rmsk exon 151291843 151291925 622 - . gene_id "ERVLE_7q36.1e"; transcript_id "ERVLE_7q36.1e"; locus "ERVLE_7q36.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1972"; repClass "LTR"; repEnd "5179"; repFamily "ERVL"; repLeft "5109"; repStart "-488"; chr7 rmsk exon 151292218 151292489 622 - . gene_id "ERVLE_7q36.1e"; transcript_id "ERVLE_7q36.1e"; locus "ERVLE_7q36.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1972"; repClass "LTR"; repEnd "5108"; repFamily "ERVL"; repLeft "4823"; repStart "-559"; chr7 rmsk exon 151293408 151294792 2950 - . gene_id "ERVLE_7q36.1e"; transcript_id "ERVLE_7q36.1e"; locus "ERVLE_7q36.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1972"; repClass "LTR"; repEnd "4679"; repFamily "ERVL"; repLeft "3251"; repStart "-988"; ### ERVLE_7q36.1f ### chr7 rmsk gene 151590282 151592361 . + . gene_id "ERVLE_7q36.1f"; transcript_id "ERVLE_7q36.1f"; locus "ERVLE_7q36.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1973"; model_cov "1988"; model_pct "35.1"; chr7 rmsk exon 151590282 151591124 1076 + . gene_id "ERVLE_7q36.1f"; transcript_id "ERVLE_7q36.1f"; locus "ERVLE_7q36.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1973"; repClass "LTR"; repEnd "1296"; repFamily "ERVL"; repLeft "-4371"; repStart "367"; chr7 rmsk exon 151591204 151591512 307 + . gene_id "ERVLE_7q36.1f"; transcript_id "ERVLE_7q36.1f"; locus "ERVLE_7q36.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1973"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2877"; repStart "2526"; chr7 rmsk exon 151591603 151592214 1263 + . gene_id "ERVLE_7q36.1f"; transcript_id "ERVLE_7q36.1f"; locus "ERVLE_7q36.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1973"; repClass "LTR"; repEnd "3593"; repFamily "ERVL"; repLeft "-2074"; repStart "2919"; chr7 rmsk exon 151592249 151592361 300 + . gene_id "ERVLE_7q36.1f"; transcript_id "ERVLE_7q36.1f"; locus "ERVLE_7q36.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1973"; repClass "LTR"; repEnd "3775"; repFamily "ERVL"; repLeft "-1892"; repStart "3654"; ### ERVLB4_7q36.1b ### chr7 rmsk gene 151723084 151724342 . - . gene_id "ERVLB4_7q36.1b"; transcript_id "ERVLB4_7q36.1b"; locus "ERVLB4_7q36.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0869"; model_cov "911"; model_pct "15.9"; chr7 rmsk exon 151723084 151723897 3284 - . gene_id "ERVLB4_7q36.1b"; transcript_id "ERVLB4_7q36.1b"; locus "ERVLB4_7q36.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0869"; repClass "LTR"; repEnd "2018"; repFamily "ERVL"; repLeft "1140"; repStart "-3696"; chr7 rmsk exon 151724311 151724342 3284 - . gene_id "ERVLB4_7q36.1b"; transcript_id "ERVLB4_7q36.1b"; locus "ERVLB4_7q36.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0869"; repClass "LTR"; repEnd "1139"; repFamily "ERVL"; repLeft "1106"; repStart "-4575"; ### ERV316A3_7q36.1c ### chr7 rmsk gene 151949508 151951823 . + . gene_id "ERV316A3_7q36.1c"; transcript_id "ERV316A3_7q36.1c"; locus "ERV316A3_7q36.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1471"; model_cov "1668"; model_pct "31.9"; chr7 rmsk exon 151949508 151949587 365 + . gene_id "ERV316A3_7q36.1c"; transcript_id "ERV316A3_7q36.1c"; locus "ERV316A3_7q36.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1471"; repClass "LTR"; repEnd "1430"; repFamily "ERVL"; repLeft "-3796"; repStart "1353"; chr7 rmsk exon 151950013 151951420 2360 + . gene_id "ERV316A3_7q36.1c"; transcript_id "ERV316A3_7q36.1c"; locus "ERV316A3_7q36.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1471"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "-1955"; repStart "1840"; chr7 rmsk exon 151951683 151951823 302 + . gene_id "ERV316A3_7q36.1c"; transcript_id "ERV316A3_7q36.1c"; locus "ERV316A3_7q36.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1471"; repClass "LTR"; repEnd "4031"; repFamily "ERVL"; repLeft "-1195"; repStart "3871"; ### HML3_7q36.1c ### chr7 rmsk gene 152038128 152044503 . - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0130"; model_cov "5509"; model_pct "91.5"; chr7 rmsk exon 152038128 152038615 3684 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 152038616 152040933 19158 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3662"; repStart "0"; chr7 rmsk exon 152040925 152041272 2852 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "5099"; repFamily "ERVK"; repLeft "4751"; repStart "-922"; chr7 rmsk exon 152041271 152043490 18206 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "3659"; repFamily "ERVK"; repLeft "1436"; repStart "-2362"; chr7 rmsk exon 152043489 152044044 4273 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr7 rmsk exon 152044045 152044503 3298 - . gene_id "HML3_7q36.1c"; transcript_id "HML3_7q36.1c"; locus "HML3_7q36.1c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0130"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "33"; repStart "0"; ### MER4B_7q36.2a ### chr7 rmsk gene 152965448 152967152 . - . gene_id "MER4B_7q36.2a"; transcript_id "MER4B_7q36.2a"; locus "MER4B_7q36.2a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0225"; model_cov "854"; model_pct "12.6"; chr7 rmsk exon 152965448 152965832 4563 - . gene_id "MER4B_7q36.2a"; transcript_id "MER4B_7q36.2a"; locus "MER4B_7q36.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0225"; repClass "LTR"; repEnd "5274"; repFamily "ERV1"; repLeft "4892"; repStart "-1484"; chr7 rmsk exon 152966363 152966587 4563 - . gene_id "MER4B_7q36.2a"; transcript_id "MER4B_7q36.2a"; locus "MER4B_7q36.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0225"; repClass "LTR"; repEnd "4891"; repFamily "ERV1"; repLeft "4692"; repStart "-1867"; chr7 rmsk exon 152966881 152967152 4563 - . gene_id "MER4B_7q36.2a"; transcript_id "MER4B_7q36.2a"; locus "MER4B_7q36.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0225"; repClass "LTR"; repEnd "4691"; repFamily "ERV1"; repLeft "4418"; repStart "-2067"; ### MER4B_7q36.2b ### chr7 rmsk gene 152967188 152969494 . - . gene_id "MER4B_7q36.2b"; transcript_id "MER4B_7q36.2b"; locus "MER4B_7q36.2b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0226"; model_cov "1171"; model_pct "17.3"; chr7 rmsk exon 152967188 152967769 4563 - . gene_id "MER4B_7q36.2b"; transcript_id "MER4B_7q36.2b"; locus "MER4B_7q36.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0226"; repClass "LTR"; repEnd "4691"; repFamily "ERV1"; repLeft "4103"; repStart "-2067"; chr7 rmsk exon 152969014 152969241 1110 - . gene_id "MER4B_7q36.2b"; transcript_id "MER4B_7q36.2b"; locus "MER4B_7q36.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0226"; repClass "LTR"; repEnd "2872"; repFamily "ERV1"; repLeft "2650"; repStart "-3886"; chr7 rmsk exon 152969295 152969494 392 - . gene_id "MER4B_7q36.2b"; transcript_id "MER4B_7q36.2b"; locus "MER4B_7q36.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0226"; repClass "LTR"; repEnd "2122"; repFamily "ERV1"; repLeft "1761"; repStart "-4636"; ### ERVLE_7q36.2a ### chr7 rmsk gene 153060323 153062035 . - . gene_id "ERVLE_7q36.2a"; transcript_id "ERVLE_7q36.2a"; locus "ERVLE_7q36.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1976"; model_cov "1538"; model_pct "27.1"; chr7 rmsk exon 153060323 153061167 1625 - . gene_id "ERVLE_7q36.2a"; transcript_id "ERVLE_7q36.2a"; locus "ERVLE_7q36.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1976"; repClass "LTR"; repEnd "5237"; repFamily "ERVL"; repLeft "4368"; repStart "-430"; chr7 rmsk exon 153061172 153061755 1204 - . gene_id "ERVLE_7q36.2a"; transcript_id "ERVLE_7q36.2a"; locus "ERVLE_7q36.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1976"; repClass "LTR"; repEnd "3380"; repFamily "ERVL"; repLeft "2797"; repStart "-2287"; chr7 rmsk exon 153061951 153062035 362 - . gene_id "ERVLE_7q36.2a"; transcript_id "ERVLE_7q36.2a"; locus "ERVLE_7q36.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1976"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "2716"; repStart "-2865"; ### ERVLE_7q36.2b ### chr7 rmsk gene 153101821 153103202 . + . gene_id "ERVLE_7q36.2b"; transcript_id "ERVLE_7q36.2b"; locus "ERVLE_7q36.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1977"; model_cov "912"; model_pct "16.1"; chr7 rmsk exon 153101821 153102086 571 + . gene_id "ERVLE_7q36.2b"; transcript_id "ERVLE_7q36.2b"; locus "ERVLE_7q36.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1977"; repClass "LTR"; repEnd "2843"; repFamily "ERVL"; repLeft "-2824"; repStart "2585"; chr7 rmsk exon 153102562 153103202 1389 + . gene_id "ERVLE_7q36.2b"; transcript_id "ERVLE_7q36.2b"; locus "ERVLE_7q36.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1977"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "-2542"; repStart "2471"; ### ERVLE_7q36.2c ### chr7 rmsk gene 153237359 153239119 . + . gene_id "ERVLE_7q36.2c"; transcript_id "ERVLE_7q36.2c"; locus "ERVLE_7q36.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1978"; model_cov "1357"; model_pct "23.9"; chr7 rmsk exon 153237359 153238386 1607 + . gene_id "ERVLE_7q36.2c"; transcript_id "ERVLE_7q36.2c"; locus "ERVLE_7q36.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1978"; repClass "LTR"; repEnd "3528"; repFamily "ERVL"; repLeft "-2139"; repStart "2506"; chr7 rmsk exon 153238799 153239119 639 + . gene_id "ERVLE_7q36.2c"; transcript_id "ERVLE_7q36.2c"; locus "ERVLE_7q36.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1978"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "-382"; repStart "4950"; ### ERVLE_7q36.2d ### chr7 rmsk gene 153377097 153380583 . - . gene_id "ERVLE_7q36.2d"; transcript_id "ERVLE_7q36.2d"; locus "ERVLE_7q36.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1979"; model_cov "2754"; model_pct "48.6"; chr7 rmsk exon 153377097 153377391 397 - . gene_id "ERVLE_7q36.2d"; transcript_id "ERVLE_7q36.2d"; locus "ERVLE_7q36.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1979"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "4975"; repStart "-392"; chr7 rmsk exon 153377587 153378070 1789 - . gene_id "ERVLE_7q36.2d"; transcript_id "ERVLE_7q36.2d"; locus "ERVLE_7q36.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1979"; repClass "LTR"; repEnd "4543"; repFamily "ERVL"; repLeft "4043"; repStart "-1124"; chr7 rmsk exon 153378610 153379336 1789 - . gene_id "ERVLE_7q36.2d"; transcript_id "ERVLE_7q36.2d"; locus "ERVLE_7q36.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1979"; repClass "LTR"; repEnd "4042"; repFamily "ERVL"; repLeft "3276"; repStart "-1625"; chr7 rmsk exon 153379449 153380583 1364 - . gene_id "ERVLE_7q36.2d"; transcript_id "ERVLE_7q36.2d"; locus "ERVLE_7q36.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1979"; repClass "LTR"; repEnd "3142"; repFamily "ERVL"; repLeft "1954"; repStart "-2525"; ### HERVFRD_7q36.2 ### chr7 rmsk gene 153389796 153397102 . + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0090"; model_cov "6367"; model_pct "88.4"; chr7 rmsk exon 153389796 153390239 4715 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0090"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-288"; repStart "1"; chr7 rmsk exon 153390614 153390873 4715 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0090"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "-13"; repStart "447"; chr7 rmsk exon 153390874 153392631 7709 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0090"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "7"; chr7 rmsk exon 153392628 153396103 12918 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0090"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "-1177"; repStart "1819"; chr7 rmsk exon 153396102 153396404 2149 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0090"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6882"; chr7 rmsk exon 153396405 153397102 4433 + . gene_id "HERVFRD_7q36.2"; transcript_id "HERVFRD_7q36.2"; locus "HERVFRD_7q36.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0090"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### HERVFC1_7q36.2 ### chr7 rmsk gene 153409398 153414153 . - . gene_id "HERVFC1_7q36.2"; transcript_id "HERVFC1_7q36.2"; locus "HERVFC1_7q36.2"; category "oneside"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0003"; model_cov "4452"; model_pct "96.2"; chr7 rmsk exon 153409398 153413807 38564 - . gene_id "HERVFC1_7q36.2"; transcript_id "HERVFC1_7q36.2"; locus "HERVFC1_7q36.2"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0003"; repClass "LTR"; repEnd "4453"; repFamily "ERV1"; repLeft "1"; repStart "-176"; chr7 rmsk exon 153413808 153414153 2931 - . gene_id "HERVFC1_7q36.2"; transcript_id "HERVFC1_7q36.2"; locus "HERVFC1_7q36.2"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0003"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_7q36.2e ### chr7 rmsk gene 153415922 153417117 . - . gene_id "ERVLE_7q36.2e"; transcript_id "ERVLE_7q36.2e"; locus "ERVLE_7q36.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1980"; model_cov "1193"; model_pct "21.1"; chr7 rmsk exon 153415922 153417117 3838 - . gene_id "ERVLE_7q36.2e"; transcript_id "ERVLE_7q36.2e"; locus "ERVLE_7q36.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1980"; repClass "LTR"; repEnd "1196"; repFamily "ERVL"; repLeft "3"; repStart "-4471"; ### ERV316A3_7q36.2a ### chr7 rmsk gene 153604689 153607835 . - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1473"; model_cov "2567"; model_pct "49.1"; chr7 rmsk exon 153604689 153605006 671 - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1473"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "2669"; repStart "-2213"; chr7 rmsk exon 153605023 153606664 1531 - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1473"; repClass "LTR"; repEnd "2226"; repFamily "ERVL"; repLeft "488"; repStart "-3000"; chr7 rmsk exon 153606973 153607466 1487 - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1473"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "232"; repStart "-4509"; chr7 rmsk exon 153607488 153607732 675 - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1473"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "173"; repStart "-9"; chr7 rmsk exon 153607745 153607835 331 - . gene_id "ERV316A3_7q36.2a"; transcript_id "ERV316A3_7q36.2a"; locus "ERV316A3_7q36.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1473"; repClass "LTR"; repEnd "119"; repFamily "ERVL"; repLeft "19"; repStart "-319"; ### ERV316A3_7q36.2b ### chr7 rmsk gene 153666797 153669712 . + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1474"; model_cov "1994"; model_pct "38.2"; chr7 rmsk exon 153666797 153667176 1267 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-3"; repStart "55"; chr7 rmsk exon 153667182 153667561 699 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "-4598"; repStart "233"; chr7 rmsk exon 153667640 153668099 1608 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "945"; repFamily "ERVL"; repLeft "-4281"; repStart "490"; chr7 rmsk exon 153668143 153668641 1608 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "1448"; repFamily "ERVL"; repLeft "-3778"; repStart "946"; chr7 rmsk exon 153668615 153669297 1554 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "-68"; repStart "4516"; chr7 rmsk exon 153669299 153669712 1112 + . gene_id "ERV316A3_7q36.2b"; transcript_id "ERV316A3_7q36.2b"; locus "ERV316A3_7q36.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1474"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_7q36.2f ### chr7 rmsk gene 153678205 153680895 . - . gene_id "ERVLE_7q36.2f"; transcript_id "ERVLE_7q36.2f"; locus "ERVLE_7q36.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1982"; model_cov "2825"; model_pct "49.9"; chr7 rmsk exon 153678205 153680895 7619 - . gene_id "ERVLE_7q36.2f"; transcript_id "ERVLE_7q36.2f"; locus "ERVLE_7q36.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1982"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "1928"; repStart "-914"; ### ERV316A3_7q36.2c ### chr7 rmsk gene 153710404 153712297 . - . gene_id "ERV316A3_7q36.2c"; transcript_id "ERV316A3_7q36.2c"; locus "ERV316A3_7q36.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1475"; model_cov "1835"; model_pct "35.1"; chr7 rmsk exon 153710404 153711872 3479 - . gene_id "ERV316A3_7q36.2c"; transcript_id "ERV316A3_7q36.2c"; locus "ERV316A3_7q36.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1475"; repClass "LTR"; repEnd "2487"; repFamily "ERVL"; repLeft "1019"; repStart "-2739"; chr7 rmsk exon 153711871 153712032 576 - . gene_id "ERV316A3_7q36.2c"; transcript_id "ERV316A3_7q36.2c"; locus "ERV316A3_7q36.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1475"; repClass "LTR"; repEnd "896"; repFamily "ERVL"; repLeft "731"; repStart "-4330"; chr7 rmsk exon 153712103 153712297 595 - . gene_id "ERV316A3_7q36.2c"; transcript_id "ERV316A3_7q36.2c"; locus "ERV316A3_7q36.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1475"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "278"; repStart "-4746"; ### ERVLE_7q36.2g ### chr7 rmsk gene 155042104 155042754 . - . gene_id "ERVLE_7q36.2g"; transcript_id "ERVLE_7q36.2g"; locus "ERVLE_7q36.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1984"; model_cov "678"; model_pct "12.0"; chr7 rmsk exon 155042104 155042754 1010 - . gene_id "ERVLE_7q36.2g"; transcript_id "ERVLE_7q36.2g"; locus "ERVLE_7q36.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1984"; repClass "LTR"; repEnd "2267"; repFamily "ERVL"; repLeft "1589"; repStart "-3400"; ### ERVLE_7q36.2h ### chr7 rmsk gene 155055085 155059379 . + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1985"; model_cov "1637"; model_pct "28.9"; chr7 rmsk exon 155055085 155055119 655 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "-4350"; repStart "1277"; chr7 rmsk exon 155055434 155055768 655 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "1663"; repFamily "ERVL"; repLeft "-4004"; repStart "1318"; chr7 rmsk exon 155056061 155056231 655 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "-3834"; repStart "1664"; chr7 rmsk exon 155057060 155057333 634 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "2188"; repFamily "ERVL"; repLeft "-3479"; repStart "1900"; chr7 rmsk exon 155057475 155057563 337 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "-3181"; repStart "2338"; chr7 rmsk exon 155057600 155057802 356 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "-2891"; repStart "2562"; chr7 rmsk exon 155058954 155059379 868 + . gene_id "ERVLE_7q36.2h"; transcript_id "ERVLE_7q36.2h"; locus "ERVLE_7q36.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1985"; repClass "LTR"; repEnd "3781"; repFamily "ERVL"; repLeft "-1886"; repStart "3348"; ### ERV316A3_7q36.2d ### chr7 rmsk gene 155060426 155062430 . - . gene_id "ERV316A3_7q36.2d"; transcript_id "ERV316A3_7q36.2d"; locus "ERV316A3_7q36.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1477"; model_cov "1222"; model_pct "23.4"; chr7 rmsk exon 155060426 155060673 746 - . gene_id "ERV316A3_7q36.2d"; transcript_id "ERV316A3_7q36.2d"; locus "ERV316A3_7q36.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1477"; repClass "LTR"; repEnd "2183"; repFamily "ERVL"; repLeft "1928"; repStart "-3043"; chr7 rmsk exon 155060681 155061256 1628 - . gene_id "ERV316A3_7q36.2d"; transcript_id "ERV316A3_7q36.2d"; locus "ERV316A3_7q36.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1477"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "937"; repStart "-3673"; chr7 rmsk exon 155062053 155062430 1628 - . gene_id "ERV316A3_7q36.2d"; transcript_id "ERV316A3_7q36.2d"; locus "ERV316A3_7q36.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1477"; repClass "LTR"; repEnd "936"; repFamily "ERVL"; repLeft "585"; repStart "-4290"; ### ERV316A3_7q36.2e ### chr7 rmsk gene 155063546 155066939 . - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1478"; model_cov "1795"; model_pct "34.3"; chr7 rmsk exon 155063546 155063848 617 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "301"; repFamily "ERVL"; repLeft "1"; repStart "-137"; chr7 rmsk exon 155064069 155064194 525 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "4824"; repStart "-266"; chr7 rmsk exon 155064566 155064692 525 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "4689"; repStart "-403"; chr7 rmsk exon 155064930 155065025 270 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "4463"; repFamily "ERVL"; repLeft "4359"; repStart "-763"; chr7 rmsk exon 155065525 155065655 364 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "4298"; repFamily "ERVL"; repLeft "4168"; repStart "-928"; chr7 rmsk exon 155065701 155066939 2344 - . gene_id "ERV316A3_7q36.2e"; transcript_id "ERV316A3_7q36.2e"; locus "ERV316A3_7q36.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1478"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "2535"; repStart "-1400"; ### HERVL40_7q36.2 ### chr7 rmsk gene 155099625 155100504 . + . gene_id "HERVL40_7q36.2"; transcript_id "HERVL40_7q36.2"; locus "HERVL40_7q36.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0225"; model_cov "878"; model_pct "15.9"; chr7 rmsk exon 155099625 155100504 2128 + . gene_id "HERVL40_7q36.2"; transcript_id "HERVL40_7q36.2"; locus "HERVL40_7q36.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0225"; repClass "LTR"; repEnd "2928"; repFamily "ERVL"; repLeft "-2602"; repStart "2050"; ### HML3_7q36.3 ### chr7 rmsk gene 155238195 155244187 . - . gene_id "HML3_7q36.3"; transcript_id "HML3_7q36.3"; locus "HML3_7q36.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0131"; model_cov "5095"; model_pct "84.6"; chr7 rmsk exon 155238195 155238739 4113 - . gene_id "HML3_7q36.3"; transcript_id "HML3_7q36.3"; locus "HML3_7q36.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0131"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 155238740 155240897 14980 - . gene_id "HML3_7q36.3"; transcript_id "HML3_7q36.3"; locus "HML3_7q36.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0131"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr7 rmsk exon 155240898 155243674 22363 - . gene_id "HML3_7q36.3"; transcript_id "HML3_7q36.3"; locus "HML3_7q36.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0131"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr7 rmsk exon 155243675 155244187 4345 - . gene_id "HML3_7q36.3"; transcript_id "HML3_7q36.3"; locus "HML3_7q36.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0131"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_7q36.3a ### chr7 rmsk gene 156108240 156109449 . - . gene_id "ERV316A3_7q36.3a"; transcript_id "ERV316A3_7q36.3a"; locus "ERV316A3_7q36.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1479"; model_cov "1033"; model_pct "19.8"; chr7 rmsk exon 156108240 156108876 1025 - . gene_id "ERV316A3_7q36.3a"; transcript_id "ERV316A3_7q36.3a"; locus "ERV316A3_7q36.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1479"; repClass "LTR"; repEnd "2741"; repFamily "ERVL"; repLeft "1952"; repStart "-2485"; chr7 rmsk exon 156109219 156109449 630 - . gene_id "ERV316A3_7q36.3a"; transcript_id "ERV316A3_7q36.3a"; locus "ERV316A3_7q36.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1479"; repClass "LTR"; repEnd "2059"; repFamily "ERVL"; repLeft "1815"; repStart "-3167"; ### ERV316A3_7q36.3b ### chr7 rmsk gene 156189789 156194382 . - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1481"; model_cov "2095"; model_pct "40.1"; chr7 rmsk exon 156189789 156189883 271 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "4836"; repStart "-293"; chr7 rmsk exon 156190042 156190223 422 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "4030"; repStart "-1031"; chr7 rmsk exon 156190327 156191124 1012 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "3495"; repFamily "ERVL"; repLeft "2709"; repStart "-1731"; chr7 rmsk exon 156191179 156191447 547 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "2901"; repStart "-1971"; chr7 rmsk exon 156191453 156191724 590 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "2710"; repFamily "ERVL"; repLeft "2440"; repStart "-2516"; chr7 rmsk exon 156192637 156192799 266 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1491"; repStart "-3564"; chr7 rmsk exon 156193765 156194000 426 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "267"; repStart "-4707"; chr7 rmsk exon 156194044 156194382 768 - . gene_id "ERV316A3_7q36.3b"; transcript_id "ERV316A3_7q36.3b"; locus "ERV316A3_7q36.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1481"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERV316A3_7q36.3c ### chr7 rmsk gene 156536513 156538045 . - . gene_id "ERV316A3_7q36.3c"; transcript_id "ERV316A3_7q36.3c"; locus "ERV316A3_7q36.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1482"; model_cov "664"; model_pct "12.7"; chr7 rmsk exon 156536513 156536730 340 - . gene_id "ERV316A3_7q36.3c"; transcript_id "ERV316A3_7q36.3c"; locus "ERV316A3_7q36.3c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1482"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "214"; repStart "0"; chr7 rmsk exon 156537062 156537334 832 - . gene_id "ERV316A3_7q36.3c"; transcript_id "ERV316A3_7q36.3c"; locus "ERV316A3_7q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1482"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "4306"; repStart "-633"; chr7 rmsk exon 156537699 156538045 832 - . gene_id "ERV316A3_7q36.3c"; transcript_id "ERV316A3_7q36.3c"; locus "ERV316A3_7q36.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1482"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "3928"; repStart "-921"; ### ERVLE_7q36.3 ### chr7 rmsk gene 156613046 156613580 . + . gene_id "ERVLE_7q36.3"; transcript_id "ERVLE_7q36.3"; locus "ERVLE_7q36.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1988"; model_cov "596"; model_pct "10.5"; chr7 rmsk exon 156613046 156613580 1483 + . gene_id "ERVLE_7q36.3"; transcript_id "ERVLE_7q36.3"; locus "ERVLE_7q36.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1988"; repClass "LTR"; repEnd "3963"; repFamily "ERVL"; repLeft "-1704"; repStart "3367"; ### ERVLB4_7q36.3a ### chr7 rmsk gene 156819636 156821920 . + . gene_id "ERVLB4_7q36.3a"; transcript_id "ERVLB4_7q36.3a"; locus "ERVLB4_7q36.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0872"; model_cov "2330"; model_pct "40.8"; chr7 rmsk exon 156819636 156821920 14160 + . gene_id "ERVLB4_7q36.3a"; transcript_id "ERVLB4_7q36.3a"; locus "ERVLB4_7q36.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0872"; repClass "LTR"; repEnd "4224"; repFamily "ERVL"; repLeft "-1490"; repStart "1894"; ### ERVLB4_7q36.3b ### chr7 rmsk gene 158124049 158124652 . + . gene_id "ERVLB4_7q36.3b"; transcript_id "ERVLB4_7q36.3b"; locus "ERVLB4_7q36.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0874"; model_cov "623"; model_pct "10.9"; chr7 rmsk exon 158124049 158124652 3696 + . gene_id "ERVLB4_7q36.3b"; transcript_id "ERVLB4_7q36.3b"; locus "ERVLB4_7q36.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0874"; repClass "LTR"; repEnd "3964"; repFamily "ERVL"; repLeft "-1750"; repStart "3341"; ### ERVLB4_7q36.3c ### chr7 rmsk gene 158314632 158316372 . + . gene_id "ERVLB4_7q36.3c"; transcript_id "ERVLB4_7q36.3c"; locus "ERVLB4_7q36.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0875"; model_cov "1084"; model_pct "19.0"; chr7 rmsk exon 158314632 158314850 601 + . gene_id "ERVLB4_7q36.3c"; transcript_id "ERVLB4_7q36.3c"; locus "ERVLB4_7q36.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0875"; repClass "LTR"; repEnd "3737"; repFamily "ERVL"; repLeft "-1977"; repStart "3500"; chr7 rmsk exon 158315546 158316372 4221 + . gene_id "ERVLB4_7q36.3c"; transcript_id "ERVLB4_7q36.3c"; locus "ERVLB4_7q36.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0875"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "-1158"; repStart "3709"; ### MER4B_7q36.3 ### chr7 rmsk gene 158844969 158853451 . + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0227"; model_cov "5501"; model_pct "81.4"; chr7 rmsk exon 158844969 158845060 665 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "-519"; repStart "1"; chr7 rmsk exon 158845061 158845977 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "1994"; repFamily "ERV1"; repLeft "-4764"; repStart "984"; chr7 rmsk exon 158846289 158848642 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "4255"; repFamily "ERV1"; repLeft "-2503"; repStart "1995"; chr7 rmsk exon 158848936 158849392 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "4728"; repFamily "ERV1"; repLeft "-2030"; repStart "4256"; chr7 rmsk exon 158850543 158851250 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "5461"; repFamily "ERV1"; repLeft "-1297"; repStart "4729"; chr7 rmsk exon 158851535 158852130 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "6060"; repFamily "ERV1"; repLeft "-698"; repStart "5462"; chr7 rmsk exon 158852420 158852454 28977 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "6084"; repFamily "ERV1"; repLeft "-674"; repStart "6061"; chr7 rmsk exon 158852829 158853204 2472 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "6351"; chr7 rmsk exon 158853205 158853451 1603 + . gene_id "MER4B_7q36.3"; transcript_id "MER4B_7q36.3"; locus "MER4B_7q36.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0227"; repClass "LTR"; repEnd "264"; repFamily "ERV1"; repLeft "-346"; repStart "1"; ### MER34B_7q36.3a ### chr7 rmsk gene 159077641 159078394 . + . gene_id "MER34B_7q36.3a"; transcript_id "MER34B_7q36.3a"; locus "MER34B_7q36.3a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0146"; model_cov "1007"; model_pct "18.8"; chr7 rmsk exon 159077641 159077705 307 + . gene_id "MER34B_7q36.3a"; transcript_id "MER34B_7q36.3a"; locus "MER34B_7q36.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0146"; repClass "LTR"; repEnd "4676"; repFamily "ERV1"; repLeft "-680"; repStart "4612"; chr7 rmsk exon 159077692 159077740 296 + . gene_id "MER34B_7q36.3a"; transcript_id "MER34B_7q36.3a"; locus "MER34B_7q36.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0146"; repClass "LTR"; repEnd "4660"; repFamily "ERV1"; repLeft "-696"; repStart "4612"; chr7 rmsk exon 159077743 159077796 290 + . gene_id "MER34B_7q36.3a"; transcript_id "MER34B_7q36.3a"; locus "MER34B_7q36.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0146"; repClass "LTR"; repEnd "4660"; repFamily "ERV1"; repLeft "-696"; repStart "4612"; chr7 rmsk exon 159077794 159078394 1876 + . gene_id "MER34B_7q36.3a"; transcript_id "MER34B_7q36.3a"; locus "MER34B_7q36.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0146"; repClass "LTR"; repEnd "5134"; repFamily "ERV1"; repLeft "-222"; repStart "4287"; ### MER34B_7q36.3b ### chr7 rmsk gene 159132209 159133865 . + . gene_id "MER34B_7q36.3b"; transcript_id "MER34B_7q36.3b"; locus "MER34B_7q36.3b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0147"; model_cov "744"; model_pct "13.9"; chr7 rmsk exon 159132209 159132475 398 + . gene_id "MER34B_7q36.3b"; transcript_id "MER34B_7q36.3b"; locus "MER34B_7q36.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0147"; repClass "LTR"; repEnd "-534"; repFamily "ERV1"; repLeft "-5890"; repStart "-790"; chr7 rmsk exon 159133403 159133865 970 + . gene_id "MER34B_7q36.3b"; transcript_id "MER34B_7q36.3b"; locus "MER34B_7q36.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0147"; repClass "LTR"; repEnd "1672"; repFamily "ERV1"; repLeft "-3684"; repStart "1184"; ### MER34B_7q36.3c ### chr7 rmsk gene 159133955 159135153 . + . gene_id "MER34B_7q36.3c"; transcript_id "MER34B_7q36.3c"; locus "MER34B_7q36.3c"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0148"; model_cov "799"; model_pct "14.9"; chr7 rmsk exon 159133955 159134207 580 + . gene_id "MER34B_7q36.3c"; transcript_id "MER34B_7q36.3c"; locus "MER34B_7q36.3c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0148"; repClass "LTR"; repEnd "744"; repFamily "ERV1"; repLeft "-4612"; repStart "488"; chr7 rmsk exon 159134279 159134654 722 + . gene_id "MER34B_7q36.3c"; transcript_id "MER34B_7q36.3c"; locus "MER34B_7q36.3c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0148"; repClass "LTR"; repEnd "2776"; repFamily "ERV1"; repLeft "-2580"; repStart "2399"; chr7 rmsk exon 159134957 159135004 722 + . gene_id "MER34B_7q36.3c"; transcript_id "MER34B_7q36.3c"; locus "MER34B_7q36.3c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0148"; repClass "LTR"; repEnd "2810"; repFamily "ERV1"; repLeft "-2546"; repStart "2777"; chr7 rmsk exon 159135031 159135153 722 + . gene_id "MER34B_7q36.3c"; transcript_id "MER34B_7q36.3c"; locus "MER34B_7q36.3c"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0148"; repClass "LTR"; repEnd "2944"; repFamily "ERV1"; repLeft "-2412"; repStart "2811"; ### MER34B_7q36.3d ### chr7 rmsk gene 159160440 159162646 . - . gene_id "MER34B_7q36.3d"; transcript_id "MER34B_7q36.3d"; locus "MER34B_7q36.3d"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0149"; model_cov "2359"; model_pct "44.0"; chr7 rmsk exon 159160440 159160773 584 - . gene_id "MER34B_7q36.3d"; transcript_id "MER34B_7q36.3d"; locus "MER34B_7q36.3d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0149"; repClass "LTR"; repEnd "5048"; repFamily "ERV1"; repLeft "4729"; repStart "-308"; chr7 rmsk exon 159160811 159162167 2525 - . gene_id "MER34B_7q36.3d"; transcript_id "MER34B_7q36.3d"; locus "MER34B_7q36.3d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0149"; repClass "LTR"; repEnd "2828"; repFamily "ERV1"; repLeft "1116"; repStart "-2528"; chr7 rmsk exon 159162432 159162646 368 - . gene_id "MER34B_7q36.3d"; transcript_id "MER34B_7q36.3d"; locus "MER34B_7q36.3d"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0149"; repClass "LTR"; repEnd "744"; repFamily "ERV1"; repLeft "416"; repStart "-4612"; ### MER101_8p23.3 ### chr8 rmsk gene 256906 257938 . + . gene_id "MER101_8p23.3"; transcript_id "MER101_8p23.3"; locus "MER101_8p23.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0219"; model_cov "680"; model_pct "10.2"; chr8 rmsk exon 256906 256948 1691 + . gene_id "MER101_8p23.3"; transcript_id "MER101_8p23.3"; locus "MER101_8p23.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0219"; repClass "LTR"; repEnd "2989"; repFamily "ERV1"; repLeft "-3650"; repStart "2952"; chr8 rmsk exon 257260 257938 1691 + . gene_id "MER101_8p23.3"; transcript_id "MER101_8p23.3"; locus "MER101_8p23.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0219"; repClass "LTR"; repEnd "3633"; repFamily "ERV1"; repLeft "-3006"; repStart "2990"; ### ERVLB4_8p23.3 ### chr8 rmsk gene 1960182 1960885 . + . gene_id "ERVLB4_8p23.3"; transcript_id "ERVLB4_8p23.3"; locus "ERVLB4_8p23.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0878"; model_cov "658"; model_pct "11.5"; chr8 rmsk exon 1960182 1960411 445 + . gene_id "ERVLB4_8p23.3"; transcript_id "ERVLB4_8p23.3"; locus "ERVLB4_8p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0878"; repClass "LTR"; repEnd "1968"; repFamily "ERVL"; repLeft "-3746"; repStart "1684"; chr8 rmsk exon 1960519 1960885 831 + . gene_id "ERVLB4_8p23.3"; transcript_id "ERVLB4_8p23.3"; locus "ERVLB4_8p23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0878"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "-3219"; repStart "2121"; ### ERVLE_8p23.2a ### chr8 rmsk gene 2376441 2377623 . + . gene_id "ERVLE_8p23.2a"; transcript_id "ERVLE_8p23.2a"; locus "ERVLE_8p23.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1990"; model_cov "781"; model_pct "13.8"; chr8 rmsk exon 2376441 2376859 656 + . gene_id "ERVLE_8p23.2a"; transcript_id "ERVLE_8p23.2a"; locus "ERVLE_8p23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1990"; repClass "LTR"; repEnd "2130"; repFamily "ERVL"; repLeft "-3537"; repStart "1683"; chr8 rmsk exon 2377296 2377623 656 + . gene_id "ERVLE_8p23.2a"; transcript_id "ERVLE_8p23.2a"; locus "ERVLE_8p23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1990"; repClass "LTR"; repEnd "2465"; repFamily "ERVL"; repLeft "-3202"; repStart "2131"; ### ERV316A3_8p23.2 ### chr8 rmsk gene 2721887 2722568 . + . gene_id "ERV316A3_8p23.2"; transcript_id "ERV316A3_8p23.2"; locus "ERV316A3_8p23.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1483"; model_cov "654"; model_pct "12.5"; chr8 rmsk exon 2721887 2722411 851 + . gene_id "ERV316A3_8p23.2"; transcript_id "ERV316A3_8p23.2"; locus "ERV316A3_8p23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1483"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-594"; repStart "4090"; chr8 rmsk exon 2722457 2722568 447 + . gene_id "ERV316A3_8p23.2"; transcript_id "ERV316A3_8p23.2"; locus "ERV316A3_8p23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1483"; repClass "LTR"; repEnd "4819"; repFamily "ERVL"; repLeft "-407"; repStart "4707"; ### ERVLE_8p23.2b ### chr8 rmsk gene 2785093 2786173 . - . gene_id "ERVLE_8p23.2b"; transcript_id "ERVLE_8p23.2b"; locus "ERVLE_8p23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1993"; model_cov "889"; model_pct "15.7"; chr8 rmsk exon 2785093 2785318 1096 - . gene_id "ERVLE_8p23.2b"; transcript_id "ERVLE_8p23.2b"; locus "ERVLE_8p23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1993"; repClass "LTR"; repEnd "2825"; repFamily "ERVL"; repLeft "2608"; repStart "-2842"; chr8 rmsk exon 2785516 2786173 1096 - . gene_id "ERVLE_8p23.2b"; transcript_id "ERVLE_8p23.2b"; locus "ERVLE_8p23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1993"; repClass "LTR"; repEnd "2607"; repFamily "ERVL"; repLeft "1935"; repStart "-3060"; ### HERVL40_8p23.2a ### chr8 rmsk gene 2914894 2916807 . - . gene_id "HERVL40_8p23.2a"; transcript_id "HERVL40_8p23.2a"; locus "HERVL40_8p23.2a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0228"; model_cov "770"; model_pct "13.9"; chr8 rmsk exon 2914894 2915068 524 - . gene_id "HERVL40_8p23.2a"; transcript_id "HERVL40_8p23.2a"; locus "HERVL40_8p23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0228"; repClass "LTR"; repEnd "4174"; repFamily "ERVL"; repLeft "3989"; repStart "-1356"; chr8 rmsk exon 2915223 2915414 576 - . gene_id "HERVL40_8p23.2a"; transcript_id "HERVL40_8p23.2a"; locus "HERVL40_8p23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0228"; repClass "LTR"; repEnd "1507"; repFamily "ERVL"; repLeft "1312"; repStart "-4023"; chr8 rmsk exon 2915714 2916072 576 - . gene_id "HERVL40_8p23.2a"; transcript_id "HERVL40_8p23.2a"; locus "HERVL40_8p23.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0228"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "921"; repStart "-4219"; chr8 rmsk exon 2916380 2916807 664 - . gene_id "HERVL40_8p23.2a"; transcript_id "HERVL40_8p23.2a"; locus "HERVL40_8p23.2a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0228"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVH_8p23.2a ### chr8 rmsk gene 3237992 3243711 . - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0682"; model_cov "5123"; model_pct "66.4"; chr8 rmsk exon 3237992 3238403 2947 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; chr8 rmsk exon 3238407 3238779 2226 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7324"; repStart "-1"; chr8 rmsk exon 3238780 3239003 1382 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5593"; repStart "-1894"; chr8 rmsk exon 3239001 3239698 3970 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "4488"; repStart "-2568"; chr8 rmsk exon 3239693 3240550 5685 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3140"; repStart "-3713"; chr8 rmsk exon 3240530 3243316 16534 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "3"; repStart "-4718"; chr8 rmsk exon 3243321 3243711 2522 - . gene_id "HERVH_8p23.2a"; transcript_id "HERVH_8p23.2a"; locus "HERVH_8p23.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0682"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_8p23.2c ### chr8 rmsk gene 3461218 3461734 . + . gene_id "ERVLE_8p23.2c"; transcript_id "ERVLE_8p23.2c"; locus "ERVLE_8p23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1995"; model_cov "596"; model_pct "10.5"; chr8 rmsk exon 3461218 3461734 357 + . gene_id "ERVLE_8p23.2c"; transcript_id "ERVLE_8p23.2c"; locus "ERVLE_8p23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1995"; repClass "LTR"; repEnd "4894"; repFamily "ERVL"; repLeft "-773"; repStart "4298"; ### MER34B_8p23.2 ### chr8 rmsk gene 5183965 5186997 . + . gene_id "MER34B_8p23.2"; transcript_id "MER34B_8p23.2"; locus "MER34B_8p23.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0151"; model_cov "2063"; model_pct "38.5"; chr8 rmsk exon 5183965 5184029 1699 + . gene_id "MER34B_8p23.2"; transcript_id "MER34B_8p23.2"; locus "MER34B_8p23.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0151"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "-5256"; repStart "41"; chr8 rmsk exon 5184454 5186335 2376 + . gene_id "MER34B_8p23.2"; transcript_id "MER34B_8p23.2"; locus "MER34B_8p23.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0151"; repClass "LTR"; repEnd "1730"; repFamily "ERV1"; repLeft "-3626"; repStart "101"; chr8 rmsk exon 5186646 5186997 2376 + . gene_id "MER34B_8p23.2"; transcript_id "MER34B_8p23.2"; locus "MER34B_8p23.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0151"; repClass "LTR"; repEnd "2106"; repFamily "ERV1"; repLeft "-3250"; repStart "1731"; ### HERVL40_8p23.2b ### chr8 rmsk gene 5223947 5230944 . + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0229"; model_cov "4183"; model_pct "75.6"; chr8 rmsk exon 5223947 5224176 840 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-106"; repStart "191"; chr8 rmsk exon 5224419 5225993 1675 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "-3919"; repStart "19"; chr8 rmsk exon 5225993 5226281 912 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "-2718"; repStart "2522"; chr8 rmsk exon 5227053 5228276 2172 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "4183"; repFamily "ERVL"; repLeft "-1347"; repStart "2925"; chr8 rmsk exon 5228257 5228850 1669 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "4676"; repFamily "ERVL"; repLeft "-854"; repStart "4080"; chr8 rmsk exon 5229701 5229794 312 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "5318"; repFamily "ERVL"; repLeft "-212"; repStart "5222"; chr8 rmsk exon 5229820 5229893 480 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "5356"; repFamily "ERVL"; repLeft "-174"; repStart "5284"; chr8 rmsk exon 5230194 5230475 834 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "5525"; repFamily "ERVL"; repLeft "-5"; repStart "5246"; chr8 rmsk exon 5230481 5230944 1179 + . gene_id "HERVL40_8p23.2b"; transcript_id "HERVL40_8p23.2b"; locus "HERVL40_8p23.2b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0229"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-9"; repStart "1"; ### ERVLB4_8p23.2a ### chr8 rmsk gene 5264725 5265925 . - . gene_id "ERVLB4_8p23.2a"; transcript_id "ERVLB4_8p23.2a"; locus "ERVLB4_8p23.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0879"; model_cov "930"; model_pct "16.3"; chr8 rmsk exon 5264725 5264762 278 - . gene_id "ERVLB4_8p23.2a"; transcript_id "ERVLB4_8p23.2a"; locus "ERVLB4_8p23.2a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0879"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "679"; repStart "0"; chr8 rmsk exon 5264788 5264822 278 - . gene_id "ERVLB4_8p23.2a"; transcript_id "ERVLB4_8p23.2a"; locus "ERVLB4_8p23.2a"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_0879"; repClass "LTR"; repEnd "678"; repFamily "ERVL"; repLeft "641"; repStart "-39"; chr8 rmsk exon 5265018 5265925 1097 - . gene_id "ERVLB4_8p23.2a"; transcript_id "ERVLB4_8p23.2a"; locus "ERVLB4_8p23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0879"; repClass "LTR"; repEnd "2532"; repFamily "ERVL"; repLeft "1602"; repStart "-3182"; ### ERVL_8p23.2 ### chr8 rmsk gene 5266996 5268327 . - . gene_id "ERVL_8p23.2"; transcript_id "ERVL_8p23.2"; locus "ERVL_8p23.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0236"; model_cov "1336"; model_pct "23.2"; chr8 rmsk exon 5266996 5268327 1603 - . gene_id "ERVL_8p23.2"; transcript_id "ERVL_8p23.2"; locus "ERVL_8p23.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0236"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "1635"; repStart "-2786"; ### HERVH_8p23.2b ### chr8 rmsk gene 5436466 5442246 . - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0683"; model_cov "5147"; model_pct "66.7"; chr8 rmsk exon 5436466 5436869 2447 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 5436870 5437252 2383 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7315"; repStart "0"; chr8 rmsk exon 5437246 5437458 1144 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 5437441 5438122 4298 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "5169"; repFamily "ERV1"; repLeft "4488"; repStart "-2544"; chr8 rmsk exon 5438123 5438975 5677 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "3140"; repStart "-3718"; chr8 rmsk exon 5438955 5441896 18860 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 5441899 5442246 1855 - . gene_id "HERVH_8p23.2b"; transcript_id "HERVH_8p23.2b"; locus "HERVH_8p23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0683"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_8p23.2d ### chr8 rmsk gene 5513958 5516461 . + . gene_id "ERVLE_8p23.2d"; transcript_id "ERVLE_8p23.2d"; locus "ERVLE_8p23.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1996"; model_cov "1915"; model_pct "33.8"; chr8 rmsk exon 5513958 5515220 1204 + . gene_id "ERVLE_8p23.2d"; transcript_id "ERVLE_8p23.2d"; locus "ERVLE_8p23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1996"; repClass "LTR"; repEnd "2719"; repFamily "ERVL"; repLeft "-2948"; repStart "1309"; chr8 rmsk exon 5515974 5516461 446 + . gene_id "ERVLE_8p23.2d"; transcript_id "ERVLE_8p23.2d"; locus "ERVLE_8p23.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1996"; repClass "LTR"; repEnd "4514"; repFamily "ERVL"; repLeft "-1153"; repStart "4009"; ### HML5_8p23.2a ### chr8 rmsk gene 5798511 5803624 . - . gene_id "HML5_8p23.2a"; transcript_id "HML5_8p23.2a"; locus "HML5_8p23.2a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0064"; model_cov "4064"; model_pct "59.4"; chr8 rmsk exon 5798511 5798974 2887 - . gene_id "HML5_8p23.2a"; transcript_id "HML5_8p23.2a"; locus "HML5_8p23.2a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0064"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 5798976 5802204 20580 - . gene_id "HML5_8p23.2a"; transcript_id "HML5_8p23.2a"; locus "HML5_8p23.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0064"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2248"; repStart "-1502"; chr8 rmsk exon 5802198 5803162 5891 - . gene_id "HML5_8p23.2a"; transcript_id "HML5_8p23.2a"; locus "HML5_8p23.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0064"; repClass "LTR"; repEnd "980"; repFamily "ERVK"; repLeft "3"; repStart "-5857"; chr8 rmsk exon 5803165 5803624 2691 - . gene_id "HML5_8p23.2a"; transcript_id "HML5_8p23.2a"; locus "HML5_8p23.2a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0064"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_8p23.2 ### chr8 rmsk gene 5822394 5831120 . - . gene_id "HERVIP10F_8p23.2"; transcript_id "HERVIP10F_8p23.2"; locus "HERVIP10F_8p23.2"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0056"; model_cov "7716"; model_pct "99.7"; chr8 rmsk exon 5822394 5822942 2992 - . gene_id "HERVIP10F_8p23.2"; transcript_id "HERVIP10F_8p23.2"; locus "HERVIP10F_8p23.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0056"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "1"; repStart "-54"; chr8 rmsk exon 5822959 5830530 46579 - . gene_id "HERVIP10F_8p23.2"; transcript_id "HERVIP10F_8p23.2"; locus "HERVIP10F_8p23.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0056"; repClass "LTR"; repEnd "7717"; repFamily "ERV1"; repLeft "1"; repStart "-20"; chr8 rmsk exon 5830550 5831120 2861 - . gene_id "HERVIP10F_8p23.2"; transcript_id "HERVIP10F_8p23.2"; locus "HERVIP10F_8p23.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0056"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "1"; repStart "-64"; ### HML5_8p23.2b ### chr8 rmsk gene 5852519 5857560 . - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0065"; model_cov "4538"; model_pct "66.4"; chr8 rmsk exon 5852519 5852982 2539 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "7"; repStart "0"; chr8 rmsk exon 5852988 5854728 11221 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "3188"; repStart "-1502"; chr8 rmsk exon 5854734 5854785 307 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "4588"; repFamily "ERVK"; repLeft "4531"; repStart "-2249"; chr8 rmsk exon 5854782 5856206 9904 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "3755"; repFamily "ERVK"; repLeft "2325"; repStart "-3082"; chr8 rmsk exon 5856200 5857092 5700 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "1"; repStart "-5932"; chr8 rmsk exon 5857093 5857560 2588 - . gene_id "HML5_8p23.2b"; transcript_id "HML5_8p23.2b"; locus "HML5_8p23.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0065"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML5_8p23.2c ### chr8 rmsk gene 5874190 5880013 . - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0066"; model_cov "4532"; model_pct "66.3"; chr8 rmsk exon 5874190 5874698 3364 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 5874699 5876076 23788 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "5421"; repStart "0"; chr8 rmsk exon 5876104 5878264 23788 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "5420"; repFamily "ERVK"; repLeft "3159"; repStart "-1417"; chr8 rmsk exon 5878271 5878361 452 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "2439"; repFamily "ERVK"; repLeft "2327"; repStart "-4398"; chr8 rmsk exon 5878786 5879510 4503 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "3"; repStart "-6091"; chr8 rmsk exon 5879516 5880013 3129 - . gene_id "HML5_8p23.2c"; transcript_id "HML5_8p23.2c"; locus "HML5_8p23.2c"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0066"; repClass "LTR"; repEnd "522"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### ERVLB4_8p23.2b ### chr8 rmsk gene 5951072 5952200 . + . gene_id "ERVLB4_8p23.2b"; transcript_id "ERVLB4_8p23.2b"; locus "ERVLB4_8p23.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0880"; model_cov "695"; model_pct "12.2"; chr8 rmsk exon 5951072 5951255 535 + . gene_id "ERVLB4_8p23.2b"; transcript_id "ERVLB4_8p23.2b"; locus "ERVLB4_8p23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0880"; repClass "LTR"; repEnd "2434"; repFamily "ERVL"; repLeft "-3280"; repStart "2251"; chr8 rmsk exon 5951331 5951555 284 + . gene_id "ERVLB4_8p23.2b"; transcript_id "ERVLB4_8p23.2b"; locus "ERVLB4_8p23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0880"; repClass "LTR"; repEnd "2700"; repFamily "ERVL"; repLeft "-3014"; repStart "2452"; chr8 rmsk exon 5951967 5952013 284 + . gene_id "ERVLB4_8p23.2b"; transcript_id "ERVLB4_8p23.2b"; locus "ERVLB4_8p23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0880"; repClass "LTR"; repEnd "2749"; repFamily "ERVL"; repLeft "-2965"; repStart "2701"; chr8 rmsk exon 5952053 5952200 289 + . gene_id "ERVLB4_8p23.2b"; transcript_id "ERVLB4_8p23.2b"; locus "ERVLB4_8p23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0880"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2732"; repStart "2766"; ### ERVLB4_8p23.2c ### chr8 rmsk gene 6214345 6220001 . + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0881"; model_cov "2798"; model_pct "49.0"; chr8 rmsk exon 6214345 6214929 2835 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "-46"; chr8 rmsk exon 6214930 6215052 943 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "110"; repFamily "ERVL"; repLeft "-5604"; repStart "1"; chr8 rmsk exon 6215358 6215474 943 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "-5486"; repStart "111"; chr8 rmsk exon 6216728 6216845 13622 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "-5366"; repStart "224"; chr8 rmsk exon 6217284 6218040 13622 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "-4588"; repStart "349"; chr8 rmsk exon 6218069 6218748 13622 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "1844"; repFamily "ERVL"; repLeft "-3870"; repStart "1127"; chr8 rmsk exon 6219052 6220001 13622 + . gene_id "ERVLB4_8p23.2c"; transcript_id "ERVLB4_8p23.2c"; locus "ERVLB4_8p23.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0881"; repClass "LTR"; repEnd "2799"; repFamily "ERVL"; repLeft "-2915"; repStart "1845"; ### ERV316A3_8p23.1a ### chr8 rmsk gene 6387550 6388169 . - . gene_id "ERV316A3_8p23.1a"; transcript_id "ERV316A3_8p23.1a"; locus "ERV316A3_8p23.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1488"; model_cov "631"; model_pct "12.1"; chr8 rmsk exon 6387550 6388169 1872 - . gene_id "ERV316A3_8p23.1a"; transcript_id "ERV316A3_8p23.1a"; locus "ERV316A3_8p23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1488"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "3406"; repStart "-1189"; ### MER41_8p23.1 ### chr8 rmsk gene 6396248 6399098 . + . gene_id "MER41_8p23.1"; transcript_id "MER41_8p23.1"; locus "MER41_8p23.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0288"; model_cov "2021"; model_pct "34.0"; chr8 rmsk exon 6396248 6396718 8500 + . gene_id "MER41_8p23.1"; transcript_id "MER41_8p23.1"; locus "MER41_8p23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0288"; repClass "LTR"; repEnd "4323"; repFamily "ERV1"; repLeft "-1623"; repStart "3416"; chr8 rmsk exon 6397026 6398027 8500 + . gene_id "MER41_8p23.1"; transcript_id "MER41_8p23.1"; locus "MER41_8p23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0288"; repClass "LTR"; repEnd "5312"; repFamily "ERV1"; repLeft "-634"; repStart "4324"; chr8 rmsk exon 6398337 6398379 8500 + . gene_id "MER41_8p23.1"; transcript_id "MER41_8p23.1"; locus "MER41_8p23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0288"; repClass "LTR"; repEnd "5346"; repFamily "ERV1"; repLeft "-600"; repStart "5313"; chr8 rmsk exon 6398676 6399098 8500 + . gene_id "MER41_8p23.1"; transcript_id "MER41_8p23.1"; locus "MER41_8p23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0288"; repClass "LTR"; repEnd "5440"; repFamily "ERV1"; repLeft "-506"; repStart "5347"; ### HERVE_8p23.1a ### chr8 rmsk gene 7068389 7073209 . + . gene_id "HERVE_8p23.1a"; transcript_id "HERVE_8p23.1a"; locus "HERVE_8p23.1a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0070"; model_cov "4518"; model_pct "57.8"; chr8 rmsk exon 7068389 7068592 1001 + . gene_id "HERVE_8p23.1a"; transcript_id "HERVE_8p23.1a"; locus "HERVE_8p23.1a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0070"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "307"; chr8 rmsk exon 7068673 7073209 31436 + . gene_id "HERVE_8p23.1a"; transcript_id "HERVE_8p23.1a"; locus "HERVE_8p23.1a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0070"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "647"; ### ERVLB4_8p23.1a ### chr8 rmsk gene 7089667 7090269 . - . gene_id "ERVLB4_8p23.1a"; transcript_id "ERVLB4_8p23.1a"; locus "ERVLB4_8p23.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0882"; model_cov "631"; model_pct "11.0"; chr8 rmsk exon 7089667 7090269 2904 - . gene_id "ERVLB4_8p23.1a"; transcript_id "ERVLB4_8p23.1a"; locus "ERVLB4_8p23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0882"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1473"; repStart "-3610"; ### HERVK11_8p23.1a ### chr8 rmsk gene 7152780 7159835 . - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0050"; model_cov "6951"; model_pct "87.4"; chr8 rmsk exon 7152780 7153846 8822 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 7153847 7154851 7569 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6954"; repStart "0"; chr8 rmsk exon 7154836 7156088 9677 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "5099"; repStart "-1188"; chr8 rmsk exon 7156072 7157985 11640 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "1165"; repStart "-3352"; chr8 rmsk exon 7157986 7158775 4376 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "1"; repStart "-7102"; chr8 rmsk exon 7158776 7159835 8925 - . gene_id "HERVK11_8p23.1a"; transcript_id "HERVK11_8p23.1a"; locus "HERVK11_8p23.1a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0050"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_8p23.1b ### chr8 rmsk gene 7223764 7224313 . + . gene_id "ERVLB4_8p23.1b"; transcript_id "ERVLB4_8p23.1b"; locus "ERVLB4_8p23.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0883"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 7223764 7224313 2720 + . gene_id "ERVLB4_8p23.1b"; transcript_id "ERVLB4_8p23.1b"; locus "ERVLB4_8p23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0883"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### ERVLB4_8p23.1c ### chr8 rmsk gene 7229906 7230454 . + . gene_id "ERVLB4_8p23.1c"; transcript_id "ERVLB4_8p23.1c"; locus "ERVLB4_8p23.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0884"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 7229906 7230454 2720 + . gene_id "ERVLB4_8p23.1c"; transcript_id "ERVLB4_8p23.1c"; locus "ERVLB4_8p23.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0884"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### HERVE_8p23.1b ### chr8 rmsk gene 7247974 7250760 . - . gene_id "HERVE_8p23.1b"; transcript_id "HERVE_8p23.1b"; locus "HERVE_8p23.1b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0071"; model_cov "2880"; model_pct "36.9"; chr8 rmsk exon 7247974 7250760 24593 - . gene_id "HERVE_8p23.1b"; transcript_id "HERVE_8p23.1b"; locus "HERVE_8p23.1b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0071"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "2285"; repStart "-2648"; ### HERVE_8p23.1c ### chr8 rmsk gene 7250896 7252032 . - . gene_id "HERVE_8p23.1c"; transcript_id "HERVE_8p23.1c"; locus "HERVE_8p23.1c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0072"; model_cov "1176"; model_pct "15.1"; chr8 rmsk exon 7250896 7252032 24593 - . gene_id "HERVE_8p23.1c"; transcript_id "HERVE_8p23.1c"; locus "HERVE_8p23.1c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0072"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "3989"; repStart "-2648"; ### HERVH_8p23.1a ### chr8 rmsk gene 7402290 7408174 . + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0684"; model_cov "4900"; model_pct "63.5"; chr8 rmsk exon 7402290 7402740 3336 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 7402743 7405835 20285 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8 rmsk exon 7405830 7405974 777 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 7405974 7406464 3417 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr8 rmsk exon 7406467 7407126 4190 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 7407128 7407343 1383 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 7407342 7407721 2596 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 7407722 7408174 3424 + . gene_id "HERVH_8p23.1a"; transcript_id "HERVH_8p23.1a"; locus "HERVH_8p23.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0684"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML2_8p23.1a ### chr8 rmsk gene 7497875 7502767 . - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0063"; model_cov "3854"; model_pct "51.1"; chr8 rmsk exon 7497875 7498842 8965 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 7498938 7500000 9764 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6379"; repStart "-95"; chr8 rmsk exon 7500001 7502767 56636 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "3586"; repStart "-1158"; ### HML2_8p23.1b ### chr8 rmsk gene 7502828 7507337 . - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0064"; model_cov "3584"; model_pct "47.6"; chr8 rmsk exon 7502828 7506377 56636 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "2794"; repStart "-1158"; chr8 rmsk exon 7506378 7507337 8874 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4B_8p23.1a ### chr8 rmsk gene 7530487 7534178 . - . gene_id "MER4B_8p23.1a"; transcript_id "MER4B_8p23.1a"; locus "MER4B_8p23.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0228"; model_cov "4186"; model_pct "61.9"; chr8 rmsk exon 7530487 7532227 10383 - . gene_id "MER4B_8p23.1a"; transcript_id "MER4B_8p23.1a"; locus "MER4B_8p23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0228"; repClass "LTR"; repEnd "6300"; repFamily "ERV1"; repLeft "4452"; repStart "-458"; chr8 rmsk exon 7532227 7532874 3603 - . gene_id "MER4B_8p23.1a"; transcript_id "MER4B_8p23.1a"; locus "MER4B_8p23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0228"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3421"; repStart "-2670"; chr8 rmsk exon 7532862 7534178 7441 - . gene_id "MER4B_8p23.1a"; transcript_id "MER4B_8p23.1a"; locus "MER4B_8p23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0228"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "1421"; repStart "-3666"; ### MER4B_8p23.1b ### chr8 rmsk gene 7534550 7535491 . - . gene_id "MER4B_8p23.1b"; transcript_id "MER4B_8p23.1b"; locus "MER4B_8p23.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0229"; model_cov "983"; model_pct "14.5"; chr8 rmsk exon 7534550 7534935 7441 - . gene_id "MER4B_8p23.1b"; transcript_id "MER4B_8p23.1b"; locus "MER4B_8p23.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0229"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "2601"; repStart "-3666"; chr8 rmsk exon 7534948 7535187 973 - . gene_id "MER4B_8p23.1b"; transcript_id "MER4B_8p23.1b"; locus "MER4B_8p23.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0229"; repClass "LTR"; repEnd "1179"; repFamily "ERV1"; repLeft "945"; repStart "-5579"; chr8 rmsk exon 7535236 7535491 1500 - . gene_id "MER4B_8p23.1b"; transcript_id "MER4B_8p23.1b"; locus "MER4B_8p23.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0229"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "589"; repStart "-5911"; ### HERVE_8p23.1d ### chr8 rmsk gene 7587548 7591600 . + . gene_id "HERVE_8p23.1d"; transcript_id "HERVE_8p23.1d"; locus "HERVE_8p23.1d"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0073"; model_cov "4056"; model_pct "51.9"; chr8 rmsk exon 7587548 7588684 24724 + . gene_id "HERVE_8p23.1d"; transcript_id "HERVE_8p23.1d"; locus "HERVE_8p23.1d"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0073"; repClass "LTR"; repEnd "2284"; repFamily "ERV1"; repLeft "-5529"; repStart "1108"; chr8 rmsk exon 7588820 7591600 24724 + . gene_id "HERVE_8p23.1d"; transcript_id "HERVE_8p23.1d"; locus "HERVE_8p23.1d"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0073"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "2285"; ### ERVLB4_8p23.1d ### chr8 rmsk gene 7609090 7609638 . - . gene_id "ERVLB4_8p23.1d"; transcript_id "ERVLB4_8p23.1d"; locus "ERVLB4_8p23.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0885"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 7609090 7609638 2707 - . gene_id "ERVLB4_8p23.1d"; transcript_id "ERVLB4_8p23.1d"; locus "ERVLB4_8p23.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0885"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1523"; repStart "-3610"; ### ERVLB4_8p23.1e ### chr8 rmsk gene 7615219 7615787 . - . gene_id "ERVLB4_8p23.1e"; transcript_id "ERVLB4_8p23.1e"; locus "ERVLB4_8p23.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0886"; model_cov "601"; model_pct "10.5"; chr8 rmsk exon 7615219 7615787 2598 - . gene_id "ERVLB4_8p23.1e"; transcript_id "ERVLB4_8p23.1e"; locus "ERVLB4_8p23.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0886"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1503"; repStart "-3610"; ### ERVLB4_8p23.1f ### chr8 rmsk gene 7682360 7682909 . + . gene_id "ERVLB4_8p23.1f"; transcript_id "ERVLB4_8p23.1f"; locus "ERVLB4_8p23.1f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0887"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 7682360 7682909 2693 + . gene_id "ERVLB4_8p23.1f"; transcript_id "ERVLB4_8p23.1f"; locus "ERVLB4_8p23.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0887"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### ERVLB4_8p23.1g ### chr8 rmsk gene 7688476 7689024 . + . gene_id "ERVLB4_8p23.1g"; transcript_id "ERVLB4_8p23.1g"; locus "ERVLB4_8p23.1g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0888"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 7688476 7689024 2720 + . gene_id "ERVLB4_8p23.1g"; transcript_id "ERVLB4_8p23.1g"; locus "ERVLB4_8p23.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0888"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### HERVE_8p23.1e ### chr8 rmsk gene 7706519 7709299 . - . gene_id "HERVE_8p23.1e"; transcript_id "HERVE_8p23.1e"; locus "HERVE_8p23.1e"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0074"; model_cov "2878"; model_pct "36.8"; chr8 rmsk exon 7706519 7709299 24664 - . gene_id "HERVE_8p23.1e"; transcript_id "HERVE_8p23.1e"; locus "HERVE_8p23.1e"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0074"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "2287"; repStart "-2648"; ### HERVE_8p23.1f ### chr8 rmsk gene 7709435 7710571 . - . gene_id "HERVE_8p23.1f"; transcript_id "HERVE_8p23.1f"; locus "HERVE_8p23.1f"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0075"; model_cov "1178"; model_pct "15.1"; chr8 rmsk exon 7709435 7710571 24664 - . gene_id "HERVE_8p23.1f"; transcript_id "HERVE_8p23.1f"; locus "HERVE_8p23.1f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0075"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "3987"; repStart "-2648"; ### MER4B_8p23.1c ### chr8 rmsk gene 7785551 7790553 . + . gene_id "MER4B_8p23.1c"; transcript_id "MER4B_8p23.1c"; locus "MER4B_8p23.1c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0230"; model_cov "5268"; model_pct "78.0"; chr8 rmsk exon 7785551 7786093 1503 + . gene_id "MER4B_8p23.1c"; transcript_id "MER4B_8p23.1c"; locus "MER4B_8p23.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0230"; repClass "LTR"; repEnd "1179"; repFamily "ERV1"; repLeft "-5579"; repStart "589"; chr8 rmsk exon 7786106 7788179 7768 + . gene_id "MER4B_8p23.1c"; transcript_id "MER4B_8p23.1c"; locus "MER4B_8p23.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0230"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "-3666"; repStart "929"; chr8 rmsk exon 7788167 7788814 3627 + . gene_id "MER4B_8p23.1c"; transcript_id "MER4B_8p23.1c"; locus "MER4B_8p23.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0230"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3421"; chr8 rmsk exon 7788814 7790553 10456 + . gene_id "MER4B_8p23.1c"; transcript_id "MER4B_8p23.1c"; locus "MER4B_8p23.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0230"; repClass "LTR"; repEnd "6300"; repFamily "ERV1"; repLeft "-458"; repStart "4452"; ### HERVH_8p23.1b ### chr8 rmsk gene 7903419 7909304 . - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0685"; model_cov "4900"; model_pct "63.5"; chr8 rmsk exon 7903419 7903871 3409 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 7903872 7904251 2596 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 7904250 7904465 1368 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 7904467 7905126 4206 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 7905129 7905619 3417 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr8 rmsk exon 7905619 7905764 747 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 7905759 7908851 20219 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr8 rmsk exon 7908854 7909304 3320 - . gene_id "HERVH_8p23.1b"; transcript_id "HERVH_8p23.1b"; locus "HERVH_8p23.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0685"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVE_8p23.1g ### chr8 rmsk gene 8035540 8039592 . + . gene_id "HERVE_8p23.1g"; transcript_id "HERVE_8p23.1g"; locus "HERVE_8p23.1g"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0076"; model_cov "4055"; model_pct "51.9"; chr8 rmsk exon 8035540 8036166 23216 + . gene_id "HERVE_8p23.1g"; transcript_id "HERVE_8p23.1g"; locus "HERVE_8p23.1g"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0076"; repClass "LTR"; repEnd "1764"; repFamily "ERV1"; repLeft "-6049"; repStart "1108"; chr8 rmsk exon 8036219 8036676 23216 + . gene_id "HERVE_8p23.1g"; transcript_id "HERVE_8p23.1g"; locus "HERVE_8p23.1g"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0076"; repClass "LTR"; repEnd "2244"; repFamily "ERV1"; repLeft "-5569"; repStart "1765"; chr8 rmsk exon 8036812 8039592 23216 + . gene_id "HERVE_8p23.1g"; transcript_id "HERVE_8p23.1g"; locus "HERVE_8p23.1g"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0076"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "2245"; ### ERVLB4_8p23.1h ### chr8 rmsk gene 8057078 8057626 . - . gene_id "ERVLB4_8p23.1h"; transcript_id "ERVLB4_8p23.1h"; locus "ERVLB4_8p23.1h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0889"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 8057078 8057626 2726 - . gene_id "ERVLB4_8p23.1h"; transcript_id "ERVLB4_8p23.1h"; locus "ERVLB4_8p23.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0889"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1523"; repStart "-3610"; ### ERVLB4_8p23.1i ### chr8 rmsk gene 8063220 8063780 . - . gene_id "ERVLB4_8p23.1i"; transcript_id "ERVLB4_8p23.1i"; locus "ERVLB4_8p23.1i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0890"; model_cov "593"; model_pct "10.4"; chr8 rmsk exon 8063220 8063780 2794 - . gene_id "ERVLB4_8p23.1i"; transcript_id "ERVLB4_8p23.1i"; locus "ERVLB4_8p23.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0890"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1511"; repStart "-3610"; ### HERVK11_8p23.1b ### chr8 rmsk gene 8127641 8134678 . + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0051"; model_cov "6895"; model_pct "86.7"; chr8 rmsk exon 8127641 8128699 8890 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 8128700 8129489 4408 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "-7102"; repStart "1"; chr8 rmsk exon 8129490 8131209 10288 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "4410"; repFamily "ERVK"; repLeft "-3543"; repStart "1165"; chr8 rmsk exon 8131265 8131400 913 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "4466"; chr8 rmsk exon 8131384 8132626 9518 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "5099"; chr8 rmsk exon 8132611 8133612 7960 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6954"; chr8 rmsk exon 8133613 8134678 8834 + . gene_id "HERVK11_8p23.1b"; transcript_id "HERVK11_8p23.1b"; locus "HERVK11_8p23.1b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0051"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVS71_8p23.1a ### chr8 rmsk gene 8138446 8145756 . + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0024"; model_cov "6462"; model_pct "72.0"; chr8 rmsk exon 8138446 8138890 3086 + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0024"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "110"; chr8 rmsk exon 8138893 8142060 21571 + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0024"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-5742"; repStart "4"; chr8 rmsk exon 8142070 8144889 14095 + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0024"; repClass "LTR"; repEnd "7785"; repFamily "ERV1"; repLeft "-1193"; repStart "4870"; chr8 rmsk exon 8144888 8145204 2226 + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0024"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr8 rmsk exon 8145205 8145756 4483 + . gene_id "HERVS71_8p23.1a"; transcript_id "HERVS71_8p23.1a"; locus "HERVS71_8p23.1a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0024"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_8p23.1c ### chr8 rmsk gene 8168723 8172260 . + . gene_id "HERVH_8p23.1c"; transcript_id "HERVH_8p23.1c"; locus "HERVH_8p23.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0686"; model_cov "3293"; model_pct "42.7"; chr8 rmsk exon 8168723 8169074 2026 + . gene_id "HERVH_8p23.1c"; transcript_id "HERVH_8p23.1c"; locus "HERVH_8p23.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0686"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 8169077 8171970 16306 + . gene_id "HERVH_8p23.1c"; transcript_id "HERVH_8p23.1c"; locus "HERVH_8p23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0686"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-4720"; repStart "1"; chr8 rmsk exon 8171956 8172260 2101 + . gene_id "HERVH_8p23.1c"; transcript_id "HERVH_8p23.1c"; locus "HERVH_8p23.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0686"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-4272"; repStart "3140"; ### HERVE_8p23.1h ### chr8 rmsk gene 8172261 8180584 . + . gene_id "HERVE_8p23.1h"; transcript_id "HERVE_8p23.1h"; locus "HERVE_8p23.1h"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0077"; model_cov "7809"; model_pct "99.9"; chr8 rmsk exon 8172261 8180087 63101 + . gene_id "HERVE_8p23.1h"; transcript_id "HERVE_8p23.1h"; locus "HERVE_8p23.1h"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0077"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "3"; chr8 rmsk exon 8180088 8180584 3681 + . gene_id "HERVE_8p23.1h"; transcript_id "HERVE_8p23.1h"; locus "HERVE_8p23.1h"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0077"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_8p23.1d ### chr8 rmsk gene 8180585 8183856 . + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0687"; model_cov "1819"; model_pct "23.6"; chr8 rmsk exon 8180585 8181138 4070 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3442"; chr8 rmsk exon 8181141 8181743 4379 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "-2624"; repStart "4488"; chr8 rmsk exon 8182811 8182876 4379 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "5090"; chr8 rmsk exon 8182878 8183084 1280 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 8183085 8183461 2469 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 8183463 8183856 2513 + . gene_id "HERVH_8p23.1d"; transcript_id "HERVH_8p23.1d"; locus "HERVH_8p23.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0687"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "-6"; repStart "2"; ### HML2_8p23.1c ### chr8 rmsk gene 8197178 8206699 . + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0066"; model_cov "7446"; model_pct "98.8"; chr8 rmsk exon 8197178 8198203 8731 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 8198204 8205586 41196 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr8 rmsk exon 8205676 8206699 8476 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVI_8p23.1 ### chr8 rmsk gene 8358592 8363270 . - . gene_id "HERVI_8p23.1"; transcript_id "HERVI_8p23.1"; locus "HERVI_8p23.1"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0018"; model_cov "3092"; model_pct "39.7"; chr8 rmsk exon 8358592 8359171 2730 - . gene_id "HERVI_8p23.1"; transcript_id "HERVI_8p23.1"; locus "HERVI_8p23.1"; repName "LTR10E"; geneRegion "ltr"; locid "HERVI-int_0018"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "-21"; chr8 rmsk exon 8359471 8362615 9198 - . gene_id "HERVI_8p23.1"; transcript_id "HERVI_8p23.1"; locus "HERVI_8p23.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0018"; repClass "LTR"; repEnd "3093"; repFamily "ERV1"; repLeft "1"; repStart "-4692"; chr8 rmsk exon 8362617 8363270 2213 - . gene_id "HERVI_8p23.1"; transcript_id "HERVI_8p23.1"; locus "HERVI_8p23.1"; repName "LTR10E"; geneRegion "ltr"; locid "HERVI-int_0018"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "-21"; ### HERVH_8p23.1e ### chr8 rmsk gene 9058914 9065195 . - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0688"; model_cov "5624"; model_pct "72.9"; chr8 rmsk exon 9058914 9059313 2627 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 9059314 9059688 2204 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr8 rmsk exon 9059689 9059904 1408 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 9059906 9061638 8764 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4551"; repStart "-1290"; chr8 rmsk exon 9061629 9061776 954 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 9061756 9064791 20915 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 9064794 9065195 2668 - . gene_id "HERVH_8p23.1e"; transcript_id "HERVH_8p23.1e"; locus "HERVH_8p23.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0688"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVE_8p23.1i ### chr8 rmsk gene 9249336 9250815 . + . gene_id "HERVE_8p23.1i"; transcript_id "HERVE_8p23.1i"; locus "HERVE_8p23.1i"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0078"; model_cov "1141"; model_pct "14.6"; chr8 rmsk exon 9249336 9249524 1434 + . gene_id "HERVE_8p23.1i"; transcript_id "HERVE_8p23.1i"; locus "HERVE_8p23.1i"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0078"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; chr8 rmsk exon 9249525 9249599 551 + . gene_id "HERVE_8p23.1i"; transcript_id "HERVE_8p23.1i"; locus "HERVE_8p23.1i"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0078"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "389"; chr8 rmsk exon 9249600 9249674 555 + . gene_id "HERVE_8p23.1i"; transcript_id "HERVE_8p23.1i"; locus "HERVE_8p23.1i"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0078"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "389"; chr8 rmsk exon 9249675 9250815 8502 + . gene_id "HERVE_8p23.1i"; transcript_id "HERVE_8p23.1i"; locus "HERVE_8p23.1i"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0078"; repClass "LTR"; repEnd "1142"; repFamily "ERV1"; repLeft "-6671"; repStart "1"; ### ERVLB4_8p23.1j ### chr8 rmsk gene 9544115 9548175 . - . gene_id "ERVLB4_8p23.1j"; transcript_id "ERVLB4_8p23.1j"; locus "ERVLB4_8p23.1j"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0891"; model_cov "3062"; model_pct "53.6"; chr8 rmsk exon 9544115 9544455 1557 - . gene_id "ERVLB4_8p23.1j"; transcript_id "ERVLB4_8p23.1j"; locus "ERVLB4_8p23.1j"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0891"; repClass "LTR"; repEnd "339"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr8 rmsk exon 9544456 9546196 16278 - . gene_id "ERVLB4_8p23.1j"; transcript_id "ERVLB4_8p23.1j"; locus "ERVLB4_8p23.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0891"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "3934"; repStart "-1"; chr8 rmsk exon 9546563 9546583 16278 - . gene_id "ERVLB4_8p23.1j"; transcript_id "ERVLB4_8p23.1j"; locus "ERVLB4_8p23.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0891"; repClass "LTR"; repEnd "3933"; repFamily "ERVL"; repLeft "3921"; repStart "-1781"; chr8 rmsk exon 9546909 9548175 16278 - . gene_id "ERVLB4_8p23.1j"; transcript_id "ERVLB4_8p23.1j"; locus "ERVLB4_8p23.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0891"; repClass "LTR"; repEnd "3920"; repFamily "ERVL"; repLeft "2649"; repStart "-1794"; ### HML5_8p23.1a ### chr8 rmsk gene 9799827 9802982 . + . gene_id "HML5_8p23.1a"; transcript_id "HML5_8p23.1a"; locus "HML5_8p23.1a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0067"; model_cov "2706"; model_pct "39.6"; chr8 rmsk exon 9799827 9800328 3579 + . gene_id "HML5_8p23.1a"; transcript_id "HML5_8p23.1a"; locus "HML5_8p23.1a"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0067"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 9800329 9801107 5443 + . gene_id "HML5_8p23.1a"; transcript_id "HML5_8p23.1a"; locus "HML5_8p23.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0067"; repClass "LTR"; repEnd "799"; repFamily "ERVK"; repLeft "-6038"; repStart "1"; chr8 rmsk exon 9801086 9802982 14338 + . gene_id "HML5_8p23.1a"; transcript_id "HML5_8p23.1a"; locus "HML5_8p23.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0067"; repClass "LTR"; repEnd "4222"; repFamily "ERVK"; repLeft "-2615"; repStart "2314"; ### HERVH_8p23.1f ### chr8 rmsk gene 9802983 9809297 . + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0689"; model_cov "5515"; model_pct "71.5"; chr8 rmsk exon 9802983 9803343 2067 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 9803344 9803615 1838 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "-7422"; repStart "1"; chr8 rmsk exon 9803886 9804103 1838 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "292"; chr8 rmsk exon 9804131 9806952 15289 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "801"; chr8 rmsk exon 9806941 9808096 6400 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-1394"; repStart "4859"; chr8 rmsk exon 9808097 9808385 1263 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr8 rmsk exon 9808379 9808930 3413 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr8 rmsk exon 9808931 9809297 2128 + . gene_id "HERVH_8p23.1f"; transcript_id "HERVH_8p23.1f"; locus "HERVH_8p23.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0689"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_8p23.1b ### chr8 rmsk gene 9809298 9812408 . + . gene_id "HML5_8p23.1b"; transcript_id "HML5_8p23.1b"; locus "HML5_8p23.1b"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0068"; model_cov "2619"; model_pct "38.3"; chr8 rmsk exon 9809298 9811906 19124 + . gene_id "HML5_8p23.1b"; transcript_id "HML5_8p23.1b"; locus "HML5_8p23.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0068"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "4218"; chr8 rmsk exon 9811907 9812408 3810 + . gene_id "HML5_8p23.1b"; transcript_id "HML5_8p23.1b"; locus "HML5_8p23.1b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0068"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_8p23.1b ### chr8 rmsk gene 9873464 9876693 . + . gene_id "ERV316A3_8p23.1b"; transcript_id "ERV316A3_8p23.1b"; locus "ERV316A3_8p23.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1489"; model_cov "2843"; model_pct "54.4"; chr8 rmsk exon 9873464 9873551 268 + . gene_id "ERV316A3_8p23.1b"; transcript_id "ERV316A3_8p23.1b"; locus "ERV316A3_8p23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1489"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "-4597"; repStart "539"; chr8 rmsk exon 9873568 9874393 592 + . gene_id "ERV316A3_8p23.1b"; transcript_id "ERV316A3_8p23.1b"; locus "ERV316A3_8p23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1489"; repClass "LTR"; repEnd "1535"; repFamily "ERVL"; repLeft "-3691"; repStart "663"; chr8 rmsk exon 9874821 9876693 4963 + . gene_id "ERV316A3_8p23.1b"; transcript_id "ERV316A3_8p23.1b"; locus "ERV316A3_8p23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1489"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "-1740"; repStart "1605"; ### ERV316A3_8p23.1c ### chr8 rmsk gene 9882724 9884677 . + . gene_id "ERV316A3_8p23.1c"; transcript_id "ERV316A3_8p23.1c"; locus "ERV316A3_8p23.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1490"; model_cov "1688"; model_pct "32.3"; chr8 rmsk exon 9882724 9882892 399 + . gene_id "ERV316A3_8p23.1c"; transcript_id "ERV316A3_8p23.1c"; locus "ERV316A3_8p23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1490"; repClass "LTR"; repEnd "3813"; repFamily "ERVL"; repLeft "-1413"; repStart "3648"; chr8 rmsk exon 9882874 9884265 3389 + . gene_id "ERV316A3_8p23.1c"; transcript_id "ERV316A3_8p23.1c"; locus "ERV316A3_8p23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1490"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3703"; chr8 rmsk exon 9884267 9884677 800 + . gene_id "ERV316A3_8p23.1c"; transcript_id "ERV316A3_8p23.1c"; locus "ERV316A3_8p23.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1490"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "2"; ### ERV316A3_8p23.1d ### chr8 rmsk gene 10239586 10241083 . - . gene_id "ERV316A3_8p23.1d"; transcript_id "ERV316A3_8p23.1d"; locus "ERV316A3_8p23.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1491"; model_cov "1537"; model_pct "29.4"; chr8 rmsk exon 10239586 10241083 3093 - . gene_id "ERV316A3_8p23.1d"; transcript_id "ERV316A3_8p23.1d"; locus "ERV316A3_8p23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1491"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "3201"; repStart "-488"; ### ERVL_8p23.1 ### chr8 rmsk gene 10430967 10432280 . + . gene_id "ERVL_8p23.1"; transcript_id "ERVL_8p23.1"; locus "ERVL_8p23.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0238"; model_cov "739"; model_pct "12.8"; chr8 rmsk exon 10430967 10431306 704 + . gene_id "ERVL_8p23.1"; transcript_id "ERVL_8p23.1"; locus "ERVL_8p23.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0238"; repClass "LTR"; repEnd "2196"; repFamily "ERVL"; repLeft "-3561"; repStart "1722"; chr8 rmsk exon 10432109 10432280 299 + . gene_id "ERVL_8p23.1"; transcript_id "ERVL_8p23.1"; locus "ERVL_8p23.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0238"; repClass "LTR"; repEnd "2377"; repFamily "ERVL"; repLeft "-3380"; repStart "2112"; ### ERVLE_8p23.1a ### chr8 rmsk gene 10469865 10470516 . - . gene_id "ERVLE_8p23.1a"; transcript_id "ERVLE_8p23.1a"; locus "ERVLE_8p23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1998"; model_cov "666"; model_pct "11.8"; chr8 rmsk exon 10469865 10470516 1180 - . gene_id "ERVLE_8p23.1a"; transcript_id "ERVLE_8p23.1a"; locus "ERVLE_8p23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1998"; repClass "LTR"; repEnd "1315"; repFamily "ERVL"; repLeft "649"; repStart "-4352"; ### ERVLE_8p23.1b ### chr8 rmsk gene 10485356 10487565 . + . gene_id "ERVLE_8p23.1b"; transcript_id "ERVLE_8p23.1b"; locus "ERVLE_8p23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_1999"; model_cov "2130"; model_pct "37.6"; chr8 rmsk exon 10485356 10485966 891 + . gene_id "ERVLE_8p23.1b"; transcript_id "ERVLE_8p23.1b"; locus "ERVLE_8p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1999"; repClass "LTR"; repEnd "636"; repFamily "ERVL"; repLeft "-5031"; repStart "5"; chr8 rmsk exon 10485983 10486232 356 + . gene_id "ERVLE_8p23.1b"; transcript_id "ERVLE_8p23.1b"; locus "ERVLE_8p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1999"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "-4706"; repStart "699"; chr8 rmsk exon 10486335 10486599 772 + . gene_id "ERVLE_8p23.1b"; transcript_id "ERVLE_8p23.1b"; locus "ERVLE_8p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1999"; repClass "LTR"; repEnd "1352"; repFamily "ERVL"; repLeft "-4315"; repStart "1069"; chr8 rmsk exon 10486612 10487565 2500 + . gene_id "ERVLE_8p23.1b"; transcript_id "ERVLE_8p23.1b"; locus "ERVLE_8p23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_1999"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-491"; repStart "4222"; ### HERVH_8p23.1g ### chr8 rmsk gene 10571081 10577329 . + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0690"; model_cov "5042"; model_pct "65.4"; chr8 rmsk exon 10571081 10571481 2690 + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0690"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 10571484 10575679 23114 + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0690"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr8 rmsk exon 10575682 10576344 4049 + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0690"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 10576346 10576937 2284 + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0690"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 10576938 10577329 2601 + . gene_id "HERVH_8p23.1g"; transcript_id "HERVH_8p23.1g"; locus "HERVH_8p23.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0690"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_8p23.1c ### chr8 rmsk gene 10620267 10621197 . + . gene_id "ERVLE_8p23.1c"; transcript_id "ERVLE_8p23.1c"; locus "ERVLE_8p23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2001"; model_cov "613"; model_pct "10.8"; chr8 rmsk exon 10620267 10620323 1203 + . gene_id "ERVLE_8p23.1c"; transcript_id "ERVLE_8p23.1c"; locus "ERVLE_8p23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2001"; repClass "LTR"; repEnd "4838"; repFamily "ERVL"; repLeft "-829"; repStart "4782"; chr8 rmsk exon 10620622 10621017 1203 + . gene_id "ERVLE_8p23.1c"; transcript_id "ERVLE_8p23.1c"; locus "ERVLE_8p23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2001"; repClass "LTR"; repEnd "5248"; repFamily "ERVL"; repLeft "-419"; repStart "4839"; chr8 rmsk exon 10621053 10621197 322 + . gene_id "ERVLE_8p23.1c"; transcript_id "ERVLE_8p23.1c"; locus "ERVLE_8p23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2001"; repClass "LTR"; repEnd "5469"; repFamily "ERVL"; repLeft "-198"; repStart "5321"; ### ERVLE_8p23.1d ### chr8 rmsk gene 11335970 11337793 . - . gene_id "ERVLE_8p23.1d"; transcript_id "ERVLE_8p23.1d"; locus "ERVLE_8p23.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2002"; model_cov "1840"; model_pct "32.5"; chr8 rmsk exon 11335970 11336643 2796 - . gene_id "ERVLE_8p23.1d"; transcript_id "ERVLE_8p23.1d"; locus "ERVLE_8p23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2002"; repClass "LTR"; repEnd "4399"; repFamily "ERVL"; repLeft "3721"; repStart "-1268"; chr8 rmsk exon 11336681 11337793 3857 - . gene_id "ERVLE_8p23.1d"; transcript_id "ERVLE_8p23.1d"; locus "ERVLE_8p23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2002"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "2415"; repStart "-2090"; ### ERVLE_8p23.1e ### chr8 rmsk gene 11338021 11340451 . + . gene_id "ERVLE_8p23.1e"; transcript_id "ERVLE_8p23.1e"; locus "ERVLE_8p23.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2003"; model_cov "1984"; model_pct "35.0"; chr8 rmsk exon 11338021 11339028 1194 + . gene_id "ERVLE_8p23.1e"; transcript_id "ERVLE_8p23.1e"; locus "ERVLE_8p23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2003"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "-3692"; repStart "875"; chr8 rmsk exon 11339068 11339445 2244 + . gene_id "ERVLE_8p23.1e"; transcript_id "ERVLE_8p23.1e"; locus "ERVLE_8p23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2003"; repClass "LTR"; repEnd "2641"; repFamily "ERVL"; repLeft "-3026"; repStart "2229"; chr8 rmsk exon 11339654 11340005 2244 + . gene_id "ERVLE_8p23.1e"; transcript_id "ERVLE_8p23.1e"; locus "ERVLE_8p23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2003"; repClass "LTR"; repEnd "2989"; repFamily "ERVL"; repLeft "-2678"; repStart "2642"; chr8 rmsk exon 11340311 11340451 2244 + . gene_id "ERVLE_8p23.1e"; transcript_id "ERVLE_8p23.1e"; locus "ERVLE_8p23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2003"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2552"; repStart "2990"; ### HERVE_8p23.1j ### chr8 rmsk gene 11907117 11913562 . - . gene_id "HERVE_8p23.1j"; transcript_id "HERVE_8p23.1j"; locus "HERVE_8p23.1j"; category "unknown"; intModel "HERVE-int"; locid "HERVE-int_0079"; model_cov "5654"; model_pct "72.4"; chr8 rmsk exon 11907117 11911625 34130 - . gene_id "HERVE_8p23.1j"; transcript_id "HERVE_8p23.1j"; locus "HERVE_8p23.1j"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0079"; repClass "LTR"; repEnd "4482"; repFamily "ERV1"; repLeft "1"; repStart "-3331"; chr8 rmsk exon 11911626 11912118 3664 - . gene_id "HERVE_8p23.1j"; transcript_id "HERVE_8p23.1j"; locus "HERVE_8p23.1j"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0079"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 11912119 11913289 8419 - . gene_id "HERVE_8p23.1j"; transcript_id "HERVE_8p23.1j"; locus "HERVE_8p23.1j"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0079"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "648"; repStart "-5992"; chr8 rmsk exon 11913371 11913562 1194 - . gene_id "HERVE_8p23.1j"; transcript_id "HERVE_8p23.1j"; locus "HERVE_8p23.1j"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0079"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; ### HERVE_8p23.1k ### chr8 rmsk gene 11933040 11936183 . - . gene_id "HERVE_8p23.1k"; transcript_id "HERVE_8p23.1k"; locus "HERVE_8p23.1k"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0080"; model_cov "2822"; model_pct "36.1"; chr8 rmsk exon 11933040 11933701 4941 - . gene_id "HERVE_8p23.1k"; transcript_id "HERVE_8p23.1k"; locus "HERVE_8p23.1k"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0080"; repClass "LTR"; repEnd "5172"; repFamily "ERV1"; repLeft "4508"; repStart "-2641"; chr8 rmsk exon 11933711 11935869 15504 - . gene_id "HERVE_8p23.1k"; transcript_id "HERVE_8p23.1k"; locus "HERVE_8p23.1k"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0080"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "648"; repStart "-5007"; chr8 rmsk exon 11935952 11936013 337 - . gene_id "HERVE_8p23.1k"; transcript_id "HERVE_8p23.1k"; locus "HERVE_8p23.1k"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0080"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "440"; repStart "0"; chr8 rmsk exon 11936014 11936183 987 - . gene_id "HERVE_8p23.1k"; transcript_id "HERVE_8p23.1k"; locus "HERVE_8p23.1k"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0080"; repClass "LTR"; repEnd "478"; repFamily "ERV1"; repLeft "315"; repStart "-23"; ### ERVLB4_8p23.1k ### chr8 rmsk gene 12016861 12017429 . + . gene_id "ERVLB4_8p23.1k"; transcript_id "ERVLB4_8p23.1k"; locus "ERVLB4_8p23.1k"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0892"; model_cov "601"; model_pct "10.5"; chr8 rmsk exon 12016861 12017429 2834 + . gene_id "ERVLB4_8p23.1k"; transcript_id "ERVLB4_8p23.1k"; locus "ERVLB4_8p23.1k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0892"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1503"; ### HERVE_8p23.1l ### chr8 rmsk gene 12037973 12042027 . - . gene_id "HERVE_8p23.1l"; transcript_id "HERVE_8p23.1l"; locus "HERVE_8p23.1l"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0081"; model_cov "4057"; model_pct "51.9"; chr8 rmsk exon 12037973 12042027 28189 - . gene_id "HERVE_8p23.1l"; transcript_id "HERVE_8p23.1l"; locus "HERVE_8p23.1l"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0081"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HML2_8p23.1d ### chr8 rmsk gene 12216461 12225988 . - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0067"; model_cov "7365"; model_pct "97.7"; chr8 rmsk exon 12216461 12217484 8110 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 12217574 12223144 35557 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1872"; repStart "-89"; chr8 rmsk exon 12223176 12224961 7773 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1893"; repFamily "ERVK"; repLeft "103"; repStart "-5643"; chr8 rmsk exon 12224962 12225988 8788 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVE_8p23.1m ### chr8 rmsk gene 12284538 12288592 . - . gene_id "HERVE_8p23.1m"; transcript_id "HERVE_8p23.1m"; locus "HERVE_8p23.1m"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0082"; model_cov "4057"; model_pct "51.9"; chr8 rmsk exon 12284538 12288592 27291 - . gene_id "HERVE_8p23.1m"; transcript_id "HERVE_8p23.1m"; locus "HERVE_8p23.1m"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0082"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HML2_8p23.1e ### chr8 rmsk gene 12458983 12461064 . - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0068"; model_cov "998"; model_pct "13.2"; chr8 rmsk exon 12458983 12460006 8570 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 12460096 12461064 44166 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6449"; repStart "-89"; ### HML2_8p23.1f ### chr8 rmsk gene 12461223 12468498 . - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0069"; model_cov "6447"; model_pct "85.5"; chr8 rmsk exon 12461223 12467471 44166 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1000"; repStart "-89"; chr8 rmsk exon 12467472 12468498 8725 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_8p23.1h ### chr8 rmsk gene 12481807 12485078 . - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0691"; model_cov "1819"; model_pct "23.6"; chr8 rmsk exon 12481807 12482200 2514 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "2"; repStart "-6"; chr8 rmsk exon 12482202 12482578 2450 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr8 rmsk exon 12482579 12482785 1313 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 12482787 12482852 4279 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5091"; repStart "-2564"; chr8 rmsk exon 12483918 12484522 4279 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "5090"; repFamily "ERV1"; repLeft "4488"; repStart "-2623"; chr8 rmsk exon 12484525 12485078 4014 - . gene_id "HERVH_8p23.1h"; transcript_id "HERVH_8p23.1h"; locus "HERVH_8p23.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0691"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3442"; repStart "-3720"; ### HERVE_8p23.1n ### chr8 rmsk gene 12485079 12493402 . - . gene_id "HERVE_8p23.1n"; transcript_id "HERVE_8p23.1n"; locus "HERVE_8p23.1n"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0083"; model_cov "7809"; model_pct "99.9"; chr8 rmsk exon 12485079 12485575 3713 - . gene_id "HERVE_8p23.1n"; transcript_id "HERVE_8p23.1n"; locus "HERVE_8p23.1n"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0083"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 12485576 12493402 63030 - . gene_id "HERVE_8p23.1n"; transcript_id "HERVE_8p23.1n"; locus "HERVE_8p23.1n"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0083"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "3"; repStart "-1"; ### HERVH_8p23.1i ### chr8 rmsk gene 12493403 12496943 . - . gene_id "HERVH_8p23.1i"; transcript_id "HERVH_8p23.1i"; locus "HERVH_8p23.1i"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0692"; model_cov "3293"; model_pct "42.7"; chr8 rmsk exon 12493403 12493707 2101 - . gene_id "HERVH_8p23.1i"; transcript_id "HERVH_8p23.1i"; locus "HERVH_8p23.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0692"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "3140"; repStart "-4272"; chr8 rmsk exon 12493693 12496589 16288 - . gene_id "HERVH_8p23.1i"; transcript_id "HERVH_8p23.1i"; locus "HERVH_8p23.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0692"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "1"; repStart "-4720"; chr8 rmsk exon 12496592 12496943 2015 - . gene_id "HERVH_8p23.1i"; transcript_id "HERVH_8p23.1i"; locus "HERVH_8p23.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0692"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_8p23.1b ### chr8 rmsk gene 12519908 12527223 . - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0025"; model_cov "6460"; model_pct "72.0"; chr8 rmsk exon 12519908 12520459 4469 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 12520460 12520776 2236 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr8 rmsk exon 12520775 12523594 14094 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "7785"; repFamily "ERV1"; repLeft "4870"; repStart "-1193"; chr8 rmsk exon 12523604 12525944 21335 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "843"; repStart "-5742"; chr8 rmsk exon 12525972 12526776 21335 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "5"; repStart "-8136"; chr8 rmsk exon 12526779 12527223 3083 - . gene_id "HERVS71_8p23.1b"; transcript_id "HERVS71_8p23.1b"; locus "HERVS71_8p23.1b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0025"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "110"; repStart "0"; ### HERVK11_8p23.1c ### chr8 rmsk gene 12531005 12538042 . - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0052"; model_cov "6951"; model_pct "87.4"; chr8 rmsk exon 12531005 12532070 8902 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 12532071 12533073 8013 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6954"; repStart "0"; chr8 rmsk exon 12533058 12534300 9499 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "5099"; repStart "-1188"; chr8 rmsk exon 12534284 12536193 11639 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "1165"; repStart "-3352"; chr8 rmsk exon 12536194 12536983 4378 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "1"; repStart "-7102"; chr8 rmsk exon 12536984 12538042 8872 - . gene_id "HERVK11_8p23.1c"; transcript_id "HERVK11_8p23.1c"; locus "HERVK11_8p23.1c"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0052"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_8p23.1l ### chr8 rmsk gene 12603194 12603754 . + . gene_id "ERVLB4_8p23.1l"; transcript_id "ERVLB4_8p23.1l"; locus "ERVLB4_8p23.1l"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0893"; model_cov "593"; model_pct "10.4"; chr8 rmsk exon 12603194 12603754 2826 + . gene_id "ERVLB4_8p23.1l"; transcript_id "ERVLB4_8p23.1l"; locus "ERVLB4_8p23.1l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0893"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1511"; ### ERVLB4_8p23.1m ### chr8 rmsk gene 12609342 12609890 . + . gene_id "ERVLB4_8p23.1m"; transcript_id "ERVLB4_8p23.1m"; locus "ERVLB4_8p23.1m"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0894"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 12609342 12609890 2777 + . gene_id "ERVLB4_8p23.1m"; transcript_id "ERVLB4_8p23.1m"; locus "ERVLB4_8p23.1m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0894"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### ERVLB4_8p23.1n ### chr8 rmsk gene 12661122 12661730 . + . gene_id "ERVLB4_8p23.1n"; transcript_id "ERVLB4_8p23.1n"; locus "ERVLB4_8p23.1n"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0895"; model_cov "640"; model_pct "11.2"; chr8 rmsk exon 12661122 12661730 2673 + . gene_id "ERVLB4_8p23.1n"; transcript_id "ERVLB4_8p23.1n"; locus "ERVLB4_8p23.1n"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0895"; repClass "LTR"; repEnd "2170"; repFamily "ERVL"; repLeft "-3544"; repStart "1530"; ### ERVLB4_8p23.1o ### chr8 rmsk gene 12667329 12667877 . + . gene_id "ERVLB4_8p23.1o"; transcript_id "ERVLB4_8p23.1o"; locus "ERVLB4_8p23.1o"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0896"; model_cov "581"; model_pct "10.2"; chr8 rmsk exon 12667329 12667877 2751 + . gene_id "ERVLB4_8p23.1o"; transcript_id "ERVLB4_8p23.1o"; locus "ERVLB4_8p23.1o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0896"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1523"; ### HERVE_8p23.1o ### chr8 rmsk gene 12688391 12692435 . - . gene_id "HERVE_8p23.1o"; transcript_id "HERVE_8p23.1o"; locus "HERVE_8p23.1o"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0084"; model_cov "4057"; model_pct "51.9"; chr8 rmsk exon 12688391 12692435 28546 - . gene_id "HERVE_8p23.1o"; transcript_id "HERVE_8p23.1o"; locus "HERVE_8p23.1o"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0084"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVE_8p23.1p ### chr8 rmsk gene 12708044 12712837 . - . gene_id "HERVE_8p23.1p"; transcript_id "HERVE_8p23.1p"; locus "HERVE_8p23.1p"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0085"; model_cov "4531"; model_pct "58.0"; chr8 rmsk exon 12708044 12712564 33002 - . gene_id "HERVE_8p23.1p"; transcript_id "HERVE_8p23.1p"; locus "HERVE_8p23.1p"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0085"; repClass "LTR"; repEnd "5178"; repFamily "ERV1"; repLeft "647"; repStart "-2635"; chr8 rmsk exon 12712648 12712837 1111 - . gene_id "HERVE_8p23.1p"; transcript_id "HERVE_8p23.1p"; locus "HERVE_8p23.1p"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0085"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "315"; repStart "-3"; ### ERVLE_8p22a ### chr8 rmsk gene 12976266 12979702 . - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2004"; model_cov "1014"; model_pct "17.9"; chr8 rmsk exon 12976266 12976430 283 - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2004"; repClass "LTR"; repEnd "4635"; repFamily "ERVL"; repLeft "4469"; repStart "-1032"; chr8 rmsk exon 12977043 12977332 694 - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2004"; repClass "LTR"; repEnd "4359"; repFamily "ERVL"; repLeft "4073"; repStart "-1308"; chr8 rmsk exon 12978721 12979004 395 - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2004"; repClass "LTR"; repEnd "1124"; repFamily "ERVL"; repLeft "828"; repStart "-4543"; chr8 rmsk exon 12979208 12979373 353 - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2004"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "401"; repStart "-5101"; chr8 rmsk exon 12979602 12979702 337 - . gene_id "ERVLE_8p22a"; transcript_id "ERVLE_8p22a"; locus "ERVLE_8p22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2004"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "115"; repStart "-5451"; ### ERV316A3_8p22a ### chr8 rmsk gene 13750377 13754086 . + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1492"; model_cov "1439"; model_pct "27.5"; chr8 rmsk exon 13750377 13750697 943 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "103"; chr8 rmsk exon 13751255 13751575 832 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "1206"; repFamily "ERVL"; repLeft "-4020"; repStart "882"; chr8 rmsk exon 13751778 13751917 288 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "1400"; repFamily "ERVL"; repLeft "-3826"; repStart "1249"; chr8 rmsk exon 13752399 13752914 1091 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "-3237"; repStart "1572"; chr8 rmsk exon 13753031 13753450 781 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "2969"; repFamily "ERVL"; repLeft "-2257"; repStart "2520"; chr8 rmsk exon 13753750 13753853 781 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "3068"; repFamily "ERVL"; repLeft "-2158"; repStart "2970"; chr8 rmsk exon 13753944 13754086 624 + . gene_id "ERV316A3_8p22a"; transcript_id "ERV316A3_8p22a"; locus "ERV316A3_8p22a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1492"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "296"; ### ERVLE_8p22b ### chr8 rmsk gene 13876540 13880538 . - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2005"; model_cov "2838"; model_pct "50.1"; chr8 rmsk exon 13876540 13876894 669 - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2005"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "4609"; repStart "-702"; chr8 rmsk exon 13876949 13877159 570 - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2005"; repClass "LTR"; repEnd "4518"; repFamily "ERVL"; repLeft "4306"; repStart "-1149"; chr8 rmsk exon 13877635 13878318 671 - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2005"; repClass "LTR"; repEnd "4279"; repFamily "ERVL"; repLeft "3493"; repStart "-1388"; chr8 rmsk exon 13878806 13880056 2094 - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2005"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "2213"; repStart "-2146"; chr8 rmsk exon 13880366 13880538 2094 - . gene_id "ERVLE_8p22b"; transcript_id "ERVLE_8p22b"; locus "ERVLE_8p22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2005"; repClass "LTR"; repEnd "2212"; repFamily "ERVL"; repLeft "2036"; repStart "-3455"; ### HERVL_8p22a ### chr8 rmsk gene 13899603 13903736 . + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0740"; model_cov "3778"; model_pct "66.8"; chr8 rmsk exon 13899603 13899718 256 + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0740"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "-4486"; repStart "1054"; chr8 rmsk exon 13899891 13900966 3179 + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0740"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "-3124"; repStart "1356"; chr8 rmsk exon 13901015 13903061 3179 + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0740"; repClass "LTR"; repEnd "4638"; repFamily "ERVL"; repLeft "-1016"; repStart "2531"; chr8 rmsk exon 13903279 13903492 728 + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0740"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "-610"; repStart "4823"; chr8 rmsk exon 13903574 13903736 728 + . gene_id "HERVL_8p22a"; transcript_id "HERVL_8p22a"; locus "HERVL_8p22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0740"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "-447"; repStart "5045"; ### ERVLB4_8p22 ### chr8 rmsk gene 13956594 13961238 . + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0898"; model_cov "3445"; model_pct "60.3"; chr8 rmsk exon 13956594 13957838 6258 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "3689"; repFamily "ERVL"; repLeft "-2025"; repStart "2400"; chr8 rmsk exon 13957839 13957972 745 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "-2875"; repStart "2702"; chr8 rmsk exon 13958020 13959727 10562 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "5371"; repFamily "ERVL"; repLeft "-343"; repStart "3692"; chr8 rmsk exon 13959762 13960053 10562 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "5687"; repFamily "ERVL"; repLeft "-27"; repStart "5372"; chr8 rmsk exon 13960760 13960789 10562 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5688"; chr8 rmsk exon 13960790 13961238 1397 + . gene_id "ERVLB4_8p22"; transcript_id "ERVLB4_8p22"; locus "ERVLB4_8p22"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0898"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### LTR57_8p22 ### chr8 rmsk gene 14176643 14182603 . + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0091"; model_cov "4198"; model_pct "78.6"; chr8 rmsk exon 14176643 14177002 1864 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-38"; repStart "15"; chr8 rmsk exon 14177035 14177498 4965 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "475"; repFamily "ERVL"; repLeft "-4868"; repStart "2"; chr8 rmsk exon 14177824 14177945 4965 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "582"; repFamily "ERVL"; repLeft "-4761"; repStart "476"; chr8 rmsk exon 14178253 14178552 4965 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "882"; repFamily "ERVL"; repLeft "-4461"; repStart "583"; chr8 rmsk exon 14178544 14180483 12420 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "-2176"; repStart "1216"; chr8 rmsk exon 14180474 14181510 8029 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "5009"; repFamily "ERVL"; repLeft "-334"; repStart "3973"; chr8 rmsk exon 14181866 14182202 8029 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "5010"; chr8 rmsk exon 14182203 14182603 2075 + . gene_id "LTR57_8p22"; transcript_id "LTR57_8p22"; locus "LTR57_8p22"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0091"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_8p22b ### chr8 rmsk gene 14337089 14338154 . + . gene_id "ERV316A3_8p22b"; transcript_id "ERV316A3_8p22b"; locus "ERV316A3_8p22b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1494"; model_cov "1091"; model_pct "20.9"; chr8 rmsk exon 14337089 14338154 2226 + . gene_id "ERV316A3_8p22b"; transcript_id "ERV316A3_8p22b"; locus "ERV316A3_8p22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1494"; repClass "LTR"; repEnd "1670"; repFamily "ERVL"; repLeft "-3556"; repStart "579"; ### MER101_8p22 ### chr8 rmsk gene 14440936 14442110 . + . gene_id "MER101_8p22"; transcript_id "MER101_8p22"; locus "MER101_8p22"; category "internal"; intModel "MER101-int"; locid "MER101-int_0221"; model_cov "705"; model_pct "10.6"; chr8 rmsk exon 14440936 14441264 667 + . gene_id "MER101_8p22"; transcript_id "MER101_8p22"; locus "MER101_8p22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0221"; repClass "LTR"; repEnd "2742"; repFamily "ERV1"; repLeft "-3897"; repStart "2406"; chr8 rmsk exon 14441728 14442016 1049 + . gene_id "MER101_8p22"; transcript_id "MER101_8p22"; locus "MER101_8p22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0221"; repClass "LTR"; repEnd "3032"; repFamily "ERV1"; repLeft "-3607"; repStart "2753"; chr8 rmsk exon 14442033 14442110 335 + . gene_id "MER101_8p22"; transcript_id "MER101_8p22"; locus "MER101_8p22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0221"; repClass "LTR"; repEnd "5739"; repFamily "ERV1"; repLeft "-900"; repStart "5649"; ### MER61_8p22 ### chr8 rmsk gene 15163869 15169579 . + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0223"; model_cov "4635"; model_pct "88.8"; chr8 rmsk exon 15163869 15164193 1649 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0223"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 15164194 15164919 2536 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0223"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "-4430"; repStart "1"; chr8 rmsk exon 15164905 15164947 327 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0223"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr8 rmsk exon 15164947 15165009 643 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0223"; repClass "LTR"; repEnd "1486"; repFamily "ERV1"; repLeft "-3731"; repStart "1408"; chr8 rmsk exon 15165286 15166235 14226 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0223"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-2726"; repStart "1487"; chr8 rmsk exon 15166548 15169263 19490 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0223"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2492"; chr8 rmsk exon 15169264 15169579 1488 + . gene_id "MER61_8p22"; transcript_id "MER61_8p22"; locus "MER61_8p22"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0223"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL74_8p22 ### chr8 rmsk gene 15319779 15321214 . + . gene_id "HERVL74_8p22"; transcript_id "HERVL74_8p22"; locus "HERVL74_8p22"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0049"; model_cov "1432"; model_pct "25.2"; chr8 rmsk exon 15319779 15320386 3075 + . gene_id "HERVL74_8p22"; transcript_id "HERVL74_8p22"; locus "HERVL74_8p22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0049"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2348"; repStart "2734"; chr8 rmsk exon 15320379 15320536 929 + . gene_id "HERVL74_8p22"; transcript_id "HERVL74_8p22"; locus "HERVL74_8p22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0049"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3486"; chr8 rmsk exon 15320543 15320638 464 + . gene_id "HERVL74_8p22"; transcript_id "HERVL74_8p22"; locus "HERVL74_8p22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0049"; repClass "LTR"; repEnd "4017"; repFamily "ERVL"; repLeft "-1668"; repStart "3921"; chr8 rmsk exon 15320633 15321214 1812 + . gene_id "HERVL74_8p22"; transcript_id "HERVL74_8p22"; locus "HERVL74_8p22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0049"; repClass "LTR"; repEnd "5165"; repFamily "ERVL"; repLeft "-520"; repStart "4589"; ### ERV316A3_8p22c ### chr8 rmsk gene 15494268 15496771 . - . gene_id "ERV316A3_8p22c"; transcript_id "ERV316A3_8p22c"; locus "ERV316A3_8p22c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1496"; model_cov "2279"; model_pct "43.6"; chr8 rmsk exon 15494268 15494317 670 - . gene_id "ERV316A3_8p22c"; transcript_id "ERV316A3_8p22c"; locus "ERV316A3_8p22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1496"; repClass "LTR"; repEnd "3093"; repFamily "ERVL"; repLeft "3044"; repStart "-2133"; chr8 rmsk exon 15494617 15494935 715 - . gene_id "ERV316A3_8p22c"; transcript_id "ERV316A3_8p22c"; locus "ERV316A3_8p22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1496"; repClass "LTR"; repEnd "3043"; repFamily "ERVL"; repLeft "2561"; repStart "-2183"; chr8 rmsk exon 15495207 15496771 3199 - . gene_id "ERV316A3_8p22c"; transcript_id "ERV316A3_8p22c"; locus "ERV316A3_8p22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1496"; repClass "LTR"; repEnd "1819"; repFamily "ERVL"; repLeft "71"; repStart "-3407"; ### HERVL40_8p22a ### chr8 rmsk gene 15634662 15636483 . - . gene_id "HERVL40_8p22a"; transcript_id "HERVL40_8p22a"; locus "HERVL40_8p22a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0232"; model_cov "1895"; model_pct "34.3"; chr8 rmsk exon 15634662 15636483 3016 - . gene_id "HERVL40_8p22a"; transcript_id "HERVL40_8p22a"; locus "HERVL40_8p22a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0232"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "2769"; repStart "-866"; ### HERVL40_8p22b ### chr8 rmsk gene 15794456 15800197 . - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0233"; model_cov "4157"; model_pct "75.2"; chr8 rmsk exon 15794456 15794957 1309 - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0233"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 15794999 15795187 871 - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0233"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "5277"; repStart "-45"; chr8 rmsk exon 15795218 15795424 351 - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0233"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "4976"; repStart "-348"; chr8 rmsk exon 15795908 15799728 9414 - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0233"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "20"; repStart "-1767"; chr8 rmsk exon 15799745 15800197 1795 - . gene_id "HERVL40_8p22b"; transcript_id "HERVL40_8p22b"; locus "HERVL40_8p22b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0233"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "34"; repStart "0"; ### ERV316A3_8p22d ### chr8 rmsk gene 15974047 15975187 . - . gene_id "ERV316A3_8p22d"; transcript_id "ERV316A3_8p22d"; locus "ERV316A3_8p22d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1497"; model_cov "520"; model_pct "10.0"; chr8 rmsk exon 15974047 15974106 367 - . gene_id "ERV316A3_8p22d"; transcript_id "ERV316A3_8p22d"; locus "ERV316A3_8p22d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1497"; repClass "LTR"; repEnd "308"; repFamily "ERVL"; repLeft "248"; repStart "-143"; chr8 rmsk exon 15974150 15974289 500 - . gene_id "ERV316A3_8p22d"; transcript_id "ERV316A3_8p22d"; locus "ERV316A3_8p22d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1497"; repClass "LTR"; repEnd "140"; repFamily "ERVL"; repLeft "5"; repStart "-311"; chr8 rmsk exon 15974296 15974715 1525 - . gene_id "ERV316A3_8p22d"; transcript_id "ERV316A3_8p22d"; locus "ERV316A3_8p22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1497"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "4791"; repStart "-8"; chr8 rmsk exon 15975091 15975187 1525 - . gene_id "ERV316A3_8p22d"; transcript_id "ERV316A3_8p22d"; locus "ERV316A3_8p22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1497"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "4697"; repStart "-436"; ### ERV316A3_8p22e ### chr8 rmsk gene 16024842 16026202 . - . gene_id "ERV316A3_8p22e"; transcript_id "ERV316A3_8p22e"; locus "ERV316A3_8p22e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1499"; model_cov "638"; model_pct "12.2"; chr8 rmsk exon 16024842 16025461 567 - . gene_id "ERV316A3_8p22e"; transcript_id "ERV316A3_8p22e"; locus "ERV316A3_8p22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1499"; repClass "LTR"; repEnd "1230"; repFamily "ERVL"; repLeft "592"; repStart "-3996"; chr8 rmsk exon 16025817 16026202 994 - . gene_id "ERV316A3_8p22e"; transcript_id "ERV316A3_8p22e"; locus "ERV316A3_8p22e"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1499"; repClass "LTR"; repEnd "530"; repFamily "ERVL"; repLeft "100"; repStart "-8"; ### HERVIP10F_8p22 ### chr8 rmsk gene 16098636 16100661 . + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0057"; model_cov "1540"; model_pct "19.9"; chr8 rmsk exon 16098636 16099082 2417 + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0057"; repClass "LTR"; repEnd "4371"; repFamily "ERV1"; repLeft "-3366"; repStart "3924"; chr8 rmsk exon 16099082 16099806 3848 + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0057"; repClass "LTR"; repEnd "5714"; repFamily "ERV1"; repLeft "-2023"; repStart "4944"; chr8 rmsk exon 16099821 16100104 1486 + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0057"; repClass "LTR"; repEnd "6847"; repFamily "ERV1"; repLeft "-890"; repStart "6577"; chr8 rmsk exon 16100108 16100162 322 + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0057"; repClass "LTR"; repEnd "7399"; repFamily "ERV1"; repLeft "-338"; repStart "7346"; chr8 rmsk exon 16100288 16100661 802 + . gene_id "HERVIP10F_8p22"; transcript_id "HERVIP10F_8p22"; locus "HERVIP10F_8p22"; repName "LTR10B"; geneRegion "ltr"; locid "HERVIP10F-int_0057"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "-117"; repStart "-68"; ### ERVLE_8p22c ### chr8 rmsk gene 16200266 16201158 . + . gene_id "ERVLE_8p22c"; transcript_id "ERVLE_8p22c"; locus "ERVLE_8p22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2008"; model_cov "886"; model_pct "15.6"; chr8 rmsk exon 16200266 16200564 854 + . gene_id "ERVLE_8p22c"; transcript_id "ERVLE_8p22c"; locus "ERVLE_8p22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2008"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-3387"; repStart "1978"; chr8 rmsk exon 16200563 16201158 527 + . gene_id "ERVLE_8p22c"; transcript_id "ERVLE_8p22c"; locus "ERVLE_8p22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2008"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "-1230"; repStart "3853"; ### ERVLE_8p22d ### chr8 rmsk gene 16436942 16438382 . - . gene_id "ERVLE_8p22d"; transcript_id "ERVLE_8p22d"; locus "ERVLE_8p22d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2009"; model_cov "1187"; model_pct "20.9"; chr8 rmsk exon 16436942 16437176 466 - . gene_id "ERVLE_8p22d"; transcript_id "ERVLE_8p22d"; locus "ERVLE_8p22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2009"; repClass "LTR"; repEnd "5357"; repFamily "ERVL"; repLeft "5113"; repStart "-310"; chr8 rmsk exon 16437362 16437558 454 - . gene_id "ERVLE_8p22d"; transcript_id "ERVLE_8p22d"; locus "ERVLE_8p22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2009"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "1778"; repStart "-3589"; chr8 rmsk exon 16437707 16437965 365 - . gene_id "ERVLE_8p22d"; transcript_id "ERVLE_8p22d"; locus "ERVLE_8p22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2009"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1451"; repStart "-3958"; chr8 rmsk exon 16437987 16438382 611 - . gene_id "ERVLE_8p22d"; transcript_id "ERVLE_8p22d"; locus "ERVLE_8p22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2009"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "1008"; repStart "-4274"; ### ERV316A3_8p22f ### chr8 rmsk gene 16504465 16505806 . - . gene_id "ERV316A3_8p22f"; transcript_id "ERV316A3_8p22f"; locus "ERV316A3_8p22f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1500"; model_cov "832"; model_pct "15.9"; chr8 rmsk exon 16504465 16504878 1301 - . gene_id "ERV316A3_8p22f"; transcript_id "ERV316A3_8p22f"; locus "ERV316A3_8p22f"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1500"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "30"; repStart "0"; chr8 rmsk exon 16504962 16505806 1856 - . gene_id "ERV316A3_8p22f"; transcript_id "ERV316A3_8p22f"; locus "ERV316A3_8p22f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1500"; repClass "LTR"; repEnd "5148"; repFamily "ERVL"; repLeft "4316"; repStart "-78"; ### ERVLE_8p22e ### chr8 rmsk gene 16525645 16526225 . + . gene_id "ERVLE_8p22e"; transcript_id "ERVLE_8p22e"; locus "ERVLE_8p22e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2010"; model_cov "587"; model_pct "10.4"; chr8 rmsk exon 16525645 16526225 1113 + . gene_id "ERVLE_8p22e"; transcript_id "ERVLE_8p22e"; locus "ERVLE_8p22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2010"; repClass "LTR"; repEnd "2799"; repFamily "ERVL"; repLeft "-2868"; repStart "2212"; ### ERV316A3_8p22g ### chr8 rmsk gene 16964142 16966917 . + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1502"; model_cov "2301"; model_pct "44.0"; chr8 rmsk exon 16964142 16964432 650 + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1502"; repClass "LTR"; repEnd "2984"; repFamily "ERVL"; repLeft "-2242"; repStart "2518"; chr8 rmsk exon 16964437 16964598 451 + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1502"; repClass "LTR"; repEnd "3475"; repFamily "ERVL"; repLeft "-1751"; repStart "3308"; chr8 rmsk exon 16964622 16964796 629 + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1502"; repClass "LTR"; repEnd "3719"; repFamily "ERVL"; repLeft "-1507"; repStart "3545"; chr8 rmsk exon 16965148 16966573 3725 + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1502"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3732"; chr8 rmsk exon 16966625 16966917 439 + . gene_id "ERV316A3_8p22g"; transcript_id "ERV316A3_8p22g"; locus "ERV316A3_8p22g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1502"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-29"; repStart "117"; ### ERVLE_8p22f ### chr8 rmsk gene 17419248 17421351 . + . gene_id "ERVLE_8p22f"; transcript_id "ERVLE_8p22f"; locus "ERVLE_8p22f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2012"; model_cov "1046"; model_pct "18.5"; chr8 rmsk exon 17419248 17419526 1069 + . gene_id "ERVLE_8p22f"; transcript_id "ERVLE_8p22f"; locus "ERVLE_8p22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2012"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "-2787"; repStart "2590"; chr8 rmsk exon 17419539 17419726 484 + . gene_id "ERVLE_8p22f"; transcript_id "ERVLE_8p22f"; locus "ERVLE_8p22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2012"; repClass "LTR"; repEnd "3147"; repFamily "ERVL"; repLeft "-2520"; repStart "2960"; chr8 rmsk exon 17420786 17421351 1323 + . gene_id "ERVLE_8p22f"; transcript_id "ERVLE_8p22f"; locus "ERVLE_8p22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2012"; repClass "LTR"; repEnd "3996"; repFamily "ERVL"; repLeft "-1671"; repStart "3427"; ### HML2_8p22 ### chr8 rmsk gene 17908096 17916431 . - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0072"; model_cov "7010"; model_pct "93.0"; chr8 rmsk exon 17908096 17912373 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "3280"; repStart "0"; chr8 rmsk exon 17912665 17914948 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "3279"; repFamily "ERVK"; repLeft "966"; repStart "-4257"; chr8 rmsk exon 17915408 17915839 970 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "1"; repStart "-7094"; chr8 rmsk exon 17916217 17916431 252 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "279"; repStart "-458"; ### HERVL_8p22b ### chr8 rmsk gene 18106643 18109297 . - . gene_id "HERVL_8p22b"; transcript_id "HERVL_8p22b"; locus "HERVL_8p22b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0741"; model_cov "2601"; model_pct "46.0"; chr8 rmsk exon 18106643 18106723 629 - . gene_id "HERVL_8p22b"; transcript_id "HERVL_8p22b"; locus "HERVL_8p22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0741"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "4857"; repStart "-717"; chr8 rmsk exon 18106787 18109297 19906 - . gene_id "HERVL_8p22b"; transcript_id "HERVL_8p22b"; locus "HERVL_8p22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0741"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "2269"; repStart "-864"; ### PRIMA4_8p22 ### chr8 rmsk gene 18215838 18218836 . - . gene_id "PRIMA4_8p22"; transcript_id "PRIMA4_8p22"; locus "PRIMA4_8p22"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0112"; model_cov "2490"; model_pct "30.1"; chr8 rmsk exon 18215838 18216135 1975 - . gene_id "PRIMA4_8p22"; transcript_id "PRIMA4_8p22"; locus "PRIMA4_8p22"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0112"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "294"; repStart "0"; chr8 rmsk exon 18216137 18218627 18186 - . gene_id "PRIMA4_8p22"; transcript_id "PRIMA4_8p22"; locus "PRIMA4_8p22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0112"; repClass "LTR"; repEnd "5096"; repFamily "ERV1"; repLeft "2606"; repStart "-3174"; chr8 rmsk exon 18218628 18218836 1489 - . gene_id "PRIMA4_8p22"; transcript_id "PRIMA4_8p22"; locus "PRIMA4_8p22"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0112"; repClass "LTR"; repEnd "207"; repFamily "ERV1"; repLeft "1"; repStart "-387"; ### HERVL_8p22c ### chr8 rmsk gene 18311252 18312611 . + . gene_id "HERVL_8p22c"; transcript_id "HERVL_8p22c"; locus "HERVL_8p22c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0742"; model_cov "1393"; model_pct "24.6"; chr8 rmsk exon 18311252 18312611 2495 + . gene_id "HERVL_8p22c"; transcript_id "HERVL_8p22c"; locus "HERVL_8p22c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0742"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "-12"; repStart "4249"; ### ERVLE_8p21.3a ### chr8 rmsk gene 19806494 19812562 . + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2013"; model_cov "3133"; model_pct "55.3"; chr8 rmsk exon 19806494 19806581 258 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "912"; repFamily "ERVL"; repLeft "-4755"; repStart "825"; chr8 rmsk exon 19807224 19807271 1635 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "1158"; repFamily "ERVL"; repLeft "-4509"; repStart "1119"; chr8 rmsk exon 19807644 19808340 1635 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "1906"; repFamily "ERVL"; repLeft "-3761"; repStart "1159"; chr8 rmsk exon 19808358 19808512 991 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "2140"; repFamily "ERVL"; repLeft "-3527"; repStart "1978"; chr8 rmsk exon 19808886 19809166 991 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "-3246"; repStart "2141"; chr8 rmsk exon 19809905 19809960 268 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "2556"; repFamily "ERVL"; repLeft "-3111"; repStart "2501"; chr8 rmsk exon 19810005 19810222 416 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "3353"; repFamily "ERVL"; repLeft "-2314"; repStart "3050"; chr8 rmsk exon 19810441 19811254 3090 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "4388"; repFamily "ERVL"; repLeft "-1279"; repStart "3574"; chr8 rmsk exon 19811673 19812099 3090 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "4879"; repFamily "ERVL"; repLeft "-788"; repStart "4389"; chr8 rmsk exon 19812404 19812562 3090 + . gene_id "ERVLE_8p21.3a"; transcript_id "ERVLE_8p21.3a"; locus "ERVLE_8p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2013"; repClass "LTR"; repEnd "5036"; repFamily "ERVL"; repLeft "-631"; repStart "4880"; ### HERVW_8p21.3 ### chr8 rmsk gene 20154739 20159633 . + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0175"; model_cov "4077"; model_pct "47.3"; chr8 rmsk exon 20154739 20155218 3316 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "276"; chr8 rmsk exon 20155241 20157250 6770 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "-6622"; repStart "22"; chr8 rmsk exon 20157245 20158897 13731 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "4230"; repFamily "ERV1"; repLeft "-4396"; repStart "2574"; chr8 rmsk exon 20158879 20159027 1039 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "7552"; repFamily "ERV1"; repLeft "-1074"; repStart "7404"; chr8 rmsk exon 20159014 20159304 2324 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr8 rmsk exon 20159309 20159633 2257 + . gene_id "HERVW_8p21.3"; transcript_id "HERVW_8p21.3"; locus "HERVW_8p21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0175"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "-455"; repStart "5"; ### ERV316A3_8p21.3a ### chr8 rmsk gene 20487271 20487751 . - . gene_id "ERV316A3_8p21.3a"; transcript_id "ERV316A3_8p21.3a"; locus "ERV316A3_8p21.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1503"; model_cov "527"; model_pct "10.1"; chr8 rmsk exon 20487271 20487751 5556 - . gene_id "ERV316A3_8p21.3a"; transcript_id "ERV316A3_8p21.3a"; locus "ERV316A3_8p21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1503"; repClass "LTR"; repEnd "4874"; repFamily "ERVL"; repLeft "4347"; repStart "-352"; ### ERV316A3_8p21.3b ### chr8 rmsk gene 20487797 20488677 . - . gene_id "ERV316A3_8p21.3b"; transcript_id "ERV316A3_8p21.3b"; locus "ERV316A3_8p21.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1504"; model_cov "877"; model_pct "16.8"; chr8 rmsk exon 20487797 20487834 5556 - . gene_id "ERV316A3_8p21.3b"; transcript_id "ERV316A3_8p21.3b"; locus "ERV316A3_8p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1504"; repClass "LTR"; repEnd "4874"; repFamily "ERVL"; repLeft "4832"; repStart "-352"; chr8 rmsk exon 20487862 20488677 5556 - . gene_id "ERV316A3_8p21.3b"; transcript_id "ERV316A3_8p21.3b"; locus "ERV316A3_8p21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1504"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "3468"; repStart "-923"; ### ERV316A3_8p21.3c ### chr8 rmsk gene 20488725 20491805 . - . gene_id "ERV316A3_8p21.3c"; transcript_id "ERV316A3_8p21.3c"; locus "ERV316A3_8p21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1505"; model_cov "2629"; model_pct "50.3"; chr8 rmsk exon 20488725 20489930 5556 - . gene_id "ERV316A3_8p21.3c"; transcript_id "ERV316A3_8p21.3c"; locus "ERV316A3_8p21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1505"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "3067"; repStart "-923"; chr8 rmsk exon 20489935 20491317 2588 - . gene_id "ERV316A3_8p21.3c"; transcript_id "ERV316A3_8p21.3c"; locus "ERV316A3_8p21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1505"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "232"; repStart "-3601"; chr8 rmsk exon 20491322 20491805 661 - . gene_id "ERV316A3_8p21.3c"; transcript_id "ERV316A3_8p21.3c"; locus "ERV316A3_8p21.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1505"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "13"; repStart "-3"; ### ERVLE_8p21.3b ### chr8 rmsk gene 20563619 20565254 . - . gene_id "ERVLE_8p21.3b"; transcript_id "ERVLE_8p21.3b"; locus "ERVLE_8p21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2015"; model_cov "1562"; model_pct "27.6"; chr8 rmsk exon 20563619 20564419 1387 - . gene_id "ERVLE_8p21.3b"; transcript_id "ERVLE_8p21.3b"; locus "ERVLE_8p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2015"; repClass "LTR"; repEnd "4462"; repFamily "ERVL"; repLeft "3616"; repStart "-1205"; chr8 rmsk exon 20564575 20565254 1479 - . gene_id "ERVLE_8p21.3b"; transcript_id "ERVLE_8p21.3b"; locus "ERVLE_8p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2015"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "2666"; repStart "-2285"; ### ERVLE_8p21.3c ### chr8 rmsk gene 20965640 20967666 . + . gene_id "ERVLE_8p21.3c"; transcript_id "ERVLE_8p21.3c"; locus "ERVLE_8p21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2016"; model_cov "1503"; model_pct "26.5"; chr8 rmsk exon 20965640 20966218 1076 + . gene_id "ERVLE_8p21.3c"; transcript_id "ERVLE_8p21.3c"; locus "ERVLE_8p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2016"; repClass "LTR"; repEnd "779"; repFamily "ERVL"; repLeft "-4888"; repStart "201"; chr8 rmsk exon 20966330 20966683 658 + . gene_id "ERVLE_8p21.3c"; transcript_id "ERVLE_8p21.3c"; locus "ERVLE_8p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2016"; repClass "LTR"; repEnd "1279"; repFamily "ERVL"; repLeft "-4388"; repStart "933"; chr8 rmsk exon 20966727 20966953 350 + . gene_id "ERVLE_8p21.3c"; transcript_id "ERVLE_8p21.3c"; locus "ERVLE_8p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2016"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "-4129"; repStart "1349"; chr8 rmsk exon 20967279 20967666 915 + . gene_id "ERVLE_8p21.3c"; transcript_id "ERVLE_8p21.3c"; locus "ERVLE_8p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2016"; repClass "LTR"; repEnd "1983"; repFamily "ERVL"; repLeft "-3684"; repStart "1593"; ### HERVL_8p21.3 ### chr8 rmsk gene 21046318 21048372 . - . gene_id "HERVL_8p21.3"; transcript_id "HERVL_8p21.3"; locus "HERVL_8p21.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0743"; model_cov "1484"; model_pct "26.2"; chr8 rmsk exon 21046318 21046871 2123 - . gene_id "HERVL_8p21.3"; transcript_id "HERVL_8p21.3"; locus "HERVL_8p21.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0743"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr8 rmsk exon 21046872 21048321 10321 - . gene_id "HERVL_8p21.3"; transcript_id "HERVL_8p21.3"; locus "HERVL_8p21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0743"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4170"; repStart "0"; chr8 rmsk exon 21048322 21048372 389 - . gene_id "HERVL_8p21.3"; transcript_id "HERVL_8p21.3"; locus "HERVL_8p21.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0743"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "1"; repStart "-402"; ### ERV316A3_8p21.3d ### chr8 rmsk gene 21063247 21068543 . + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1506"; model_cov "3920"; model_pct "75.0"; chr8 rmsk exon 21063247 21063452 723 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "227"; chr8 rmsk exon 21063465 21064712 3058 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "1516"; repFamily "ERVL"; repLeft "-3710"; repStart "231"; chr8 rmsk exon 21065113 21065359 3058 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "1754"; repFamily "ERVL"; repLeft "-3472"; repStart "1517"; chr8 rmsk exon 21065350 21067344 5555 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "4673"; repFamily "ERVL"; repLeft "-553"; repStart "2649"; chr8 rmsk exon 21067667 21068041 5555 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "-178"; repStart "4674"; chr8 rmsk exon 21068175 21068543 1142 + . gene_id "ERV316A3_8p21.3d"; transcript_id "ERV316A3_8p21.3d"; locus "ERV316A3_8p21.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1506"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "36"; ### ERV316A3_8p21.3e ### chr8 rmsk gene 21281908 21288297 . + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1507"; model_cov "4399"; model_pct "84.2"; chr8 rmsk exon 21281908 21282047 1147 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "324"; chr8 rmsk exon 21282449 21282889 878 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "933"; repFamily "ERVL"; repLeft "-4293"; repStart "444"; chr8 rmsk exon 21282976 21283149 284 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "1465"; repFamily "ERVL"; repLeft "-3761"; repStart "1286"; chr8 rmsk exon 21283156 21283420 363 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "2068"; repFamily "ERVL"; repLeft "-3158"; repStart "1715"; chr8 rmsk exon 21284639 21286281 4907 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "-1876"; repStart "1706"; chr8 rmsk exon 21286302 21287181 5073 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "4335"; repFamily "ERVL"; repLeft "-891"; repStart "3405"; chr8 rmsk exon 21287527 21288297 5073 + . gene_id "ERV316A3_8p21.3e"; transcript_id "ERV316A3_8p21.3e"; locus "ERV316A3_8p21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1507"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "-86"; repStart "4336"; ### ERV316A3_8p21.3f ### chr8 rmsk gene 21513848 21516552 . - . gene_id "ERV316A3_8p21.3f"; transcript_id "ERV316A3_8p21.3f"; locus "ERV316A3_8p21.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1508"; model_cov "2120"; model_pct "40.6"; chr8 rmsk exon 21513848 21514294 1521 - . gene_id "ERV316A3_8p21.3f"; transcript_id "ERV316A3_8p21.3f"; locus "ERV316A3_8p21.3f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1508"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 21514295 21514535 876 - . gene_id "ERV316A3_8p21.3f"; transcript_id "ERV316A3_8p21.3f"; locus "ERV316A3_8p21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1508"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4975"; repStart "0"; chr8 rmsk exon 21514523 21515370 1996 - . gene_id "ERV316A3_8p21.3f"; transcript_id "ERV316A3_8p21.3f"; locus "ERV316A3_8p21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1508"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "3867"; repStart "-380"; chr8 rmsk exon 21515750 21516552 1637 - . gene_id "ERV316A3_8p21.3f"; transcript_id "ERV316A3_8p21.3f"; locus "ERV316A3_8p21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1508"; repClass "LTR"; repEnd "3872"; repFamily "ERVL"; repLeft "2982"; repStart "-1354"; ### ERV316A3_8p21.3g ### chr8 rmsk gene 21602749 21609595 . + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1509"; model_cov "4732"; model_pct "90.5"; chr8 rmsk exon 21602749 21602848 353 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "116"; repFamily "ERVL"; repLeft "-373"; repStart "3"; chr8 rmsk exon 21602913 21603147 1016 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "245"; chr8 rmsk exon 21603149 21603370 412 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-4778"; repStart "232"; chr8 rmsk exon 21603936 21605661 2275 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "2070"; repFamily "ERVL"; repLeft "-3156"; repStart "336"; chr8 rmsk exon 21606577 21607245 1687 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "3176"; repFamily "ERVL"; repLeft "-2050"; repStart "2476"; chr8 rmsk exon 21607265 21608053 1555 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "-1814"; repStart "2621"; chr8 rmsk exon 21608067 21609353 2556 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "5082"; repFamily "ERVL"; repLeft "-144"; repStart "3791"; chr8 rmsk exon 21609498 21609595 268 + . gene_id "ERV316A3_8p21.3g"; transcript_id "ERV316A3_8p21.3g"; locus "ERV316A3_8p21.3g"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1509"; repClass "LTR"; repEnd "110"; repFamily "ERVL"; repLeft "-379"; repStart "4"; ### HERVL40_8p21.3 ### chr8 rmsk gene 22264071 22266028 . + . gene_id "HERVL40_8p21.3"; transcript_id "HERVL40_8p21.3"; locus "HERVL40_8p21.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0234"; model_cov "1158"; model_pct "20.9"; chr8 rmsk exon 22264071 22264282 2908 + . gene_id "HERVL40_8p21.3"; transcript_id "HERVL40_8p21.3"; locus "HERVL40_8p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0234"; repClass "LTR"; repEnd "2732"; repFamily "ERVL"; repLeft "-2798"; repStart "2525"; chr8 rmsk exon 22264567 22265128 2908 + . gene_id "HERVL40_8p21.3"; transcript_id "HERVL40_8p21.3"; locus "HERVL40_8p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0234"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "-2240"; repStart "2733"; chr8 rmsk exon 22265657 22266028 1362 + . gene_id "HERVL40_8p21.3"; transcript_id "HERVL40_8p21.3"; locus "HERVL40_8p21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0234"; repClass "LTR"; repEnd "3692"; repFamily "ERVL"; repLeft "-1838"; repStart "3298"; ### MER101_8p21.3 ### chr8 rmsk gene 22479930 22483803 . - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0224"; model_cov "1765"; model_pct "26.6"; chr8 rmsk exon 22479930 22480484 2136 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "3135"; repStart "-2723"; chr8 rmsk exon 22480779 22480813 2136 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "3532"; repFamily "ERV1"; repLeft "3514"; repStart "-3107"; chr8 rmsk exon 22480937 22481052 2136 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "3513"; repFamily "ERV1"; repLeft "3406"; repStart "-3126"; chr8 rmsk exon 22481389 22481545 2136 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "3405"; repFamily "ERV1"; repLeft "3239"; repStart "-3234"; chr8 rmsk exon 22482632 22483282 2333 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "2975"; repFamily "ERV1"; repLeft "2504"; repStart "-3664"; chr8 rmsk exon 22483586 22483803 2333 - . gene_id "MER101_8p21.3"; transcript_id "MER101_8p21.3"; locus "MER101_8p21.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0224"; repClass "LTR"; repEnd "2503"; repFamily "ERV1"; repLeft "2281"; repStart "-4136"; ### ERVLE_8p21.3d ### chr8 rmsk gene 22894049 22895447 . + . gene_id "ERVLE_8p21.3d"; transcript_id "ERVLE_8p21.3d"; locus "ERVLE_8p21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2017"; model_cov "918"; model_pct "16.2"; chr8 rmsk exon 22894049 22894160 317 + . gene_id "ERVLE_8p21.3d"; transcript_id "ERVLE_8p21.3d"; locus "ERVLE_8p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2017"; repClass "LTR"; repEnd "215"; repFamily "ERVL"; repLeft "-5452"; repStart "102"; chr8 rmsk exon 22894604 22894828 564 + . gene_id "ERVLE_8p21.3d"; transcript_id "ERVLE_8p21.3d"; locus "ERVLE_8p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2017"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "-5101"; repStart "336"; chr8 rmsk exon 22894905 22895168 426 + . gene_id "ERVLE_8p21.3d"; transcript_id "ERVLE_8p21.3d"; locus "ERVLE_8p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2017"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "-4643"; repStart "746"; chr8 rmsk exon 22895164 22895447 649 + . gene_id "ERVLE_8p21.3d"; transcript_id "ERVLE_8p21.3d"; locus "ERVLE_8p21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2017"; repClass "LTR"; repEnd "1307"; repFamily "ERVL"; repLeft "-4360"; repStart "1010"; ### ERVLB4_8p21.3a ### chr8 rmsk gene 23034222 23038768 . + . gene_id "ERVLB4_8p21.3a"; transcript_id "ERVLB4_8p21.3a"; locus "ERVLB4_8p21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0901"; model_cov "3624"; model_pct "63.4"; chr8 rmsk exon 23034222 23034448 19819 + . gene_id "ERVLB4_8p21.3a"; transcript_id "ERVLB4_8p21.3a"; locus "ERVLB4_8p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0901"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "-3442"; repStart "2048"; chr8 rmsk exon 23034746 23035143 19819 + . gene_id "ERVLB4_8p21.3a"; transcript_id "ERVLB4_8p21.3a"; locus "ERVLB4_8p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0901"; repClass "LTR"; repEnd "2672"; repFamily "ERVL"; repLeft "-3042"; repStart "2273"; chr8 rmsk exon 23035442 23036562 19819 + . gene_id "ERVLB4_8p21.3a"; transcript_id "ERVLB4_8p21.3a"; locus "ERVLB4_8p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0901"; repClass "LTR"; repEnd "3748"; repFamily "ERVL"; repLeft "-1966"; repStart "2673"; chr8 rmsk exon 23036852 23038768 19819 + . gene_id "ERVLB4_8p21.3a"; transcript_id "ERVLB4_8p21.3a"; locus "ERVLB4_8p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0901"; repClass "LTR"; repEnd "5675"; repFamily "ERVL"; repLeft "-39"; repStart "3749"; ### PABLA_8p21.3a ### chr8 rmsk gene 23049150 23056094 . + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0079"; model_cov "4526"; model_pct "90.2"; chr8 rmsk exon 23049150 23049771 4817 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-35"; repStart "2"; chr8 rmsk exon 23049834 23049886 310 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "595"; chr8 rmsk exon 23049895 23050791 5716 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "891"; repFamily "ERV1"; repLeft "-4124"; repStart "12"; chr8 rmsk exon 23051067 23051547 3286 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "1653"; repFamily "ERV1"; repLeft "-3362"; repStart "1158"; chr8 rmsk exon 23052060 23052285 20797 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "2092"; repFamily "ERV1"; repLeft "-2923"; repStart "1862"; chr8 rmsk exon 23052586 23055435 20797 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "2093"; chr8 rmsk exon 23055436 23056094 4889 + . gene_id "PABLA_8p21.3a"; transcript_id "PABLA_8p21.3a"; locus "PABLA_8p21.3a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0079"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLA_8p21.3b ### chr8 rmsk gene 23240050 23243200 . + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0080"; model_cov "2181"; model_pct "43.5"; chr8 rmsk exon 23240050 23240415 4610 + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0080"; repClass "LTR"; repEnd "-1234"; repFamily "ERV1"; repLeft "-6249"; repStart "-1582"; chr8 rmsk exon 23240453 23240854 4610 + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0080"; repClass "LTR"; repEnd "-757"; repFamily "ERV1"; repLeft "-5772"; repStart "-1233"; chr8 rmsk exon 23241153 23241367 4610 + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0080"; repClass "LTR"; repEnd "-583"; repFamily "ERV1"; repLeft "-5598"; repStart "-756"; chr8 rmsk exon 23241663 23241727 4610 + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0080"; repClass "LTR"; repEnd "-536"; repFamily "ERV1"; repLeft "-5551"; repStart "-582"; chr8 rmsk exon 23242019 23243200 6358 + . gene_id "PABLA_8p21.3b"; transcript_id "PABLA_8p21.3b"; locus "PABLA_8p21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0080"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-3366"; repStart "511"; ### ERVLB4_8p21.3b ### chr8 rmsk gene 23336642 23337699 . - . gene_id "ERVLB4_8p21.3b"; transcript_id "ERVLB4_8p21.3b"; locus "ERVLB4_8p21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0902"; model_cov "1037"; model_pct "18.1"; chr8 rmsk exon 23336642 23336716 472 - . gene_id "ERVLB4_8p21.3b"; transcript_id "ERVLB4_8p21.3b"; locus "ERVLB4_8p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0902"; repClass "LTR"; repEnd "2162"; repFamily "ERVL"; repLeft "2087"; repStart "-3552"; chr8 rmsk exon 23336750 23337699 5038 - . gene_id "ERVLB4_8p21.3b"; transcript_id "ERVLB4_8p21.3b"; locus "ERVLB4_8p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0902"; repClass "LTR"; repEnd "1996"; repFamily "ERVL"; repLeft "1034"; repStart "-3718"; ### HML6_8p21.3 ### chr8 rmsk gene 23419617 23422552 . + . gene_id "HML6_8p21.3"; transcript_id "HML6_8p21.3"; locus "HML6_8p21.3"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0046"; model_cov "2206"; model_pct "30.6"; chr8 rmsk exon 23419617 23419802 8515 + . gene_id "HML6_8p21.3"; transcript_id "HML6_8p21.3"; locus "HML6_8p21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0046"; repClass "LTR"; repEnd "4260"; repFamily "ERVK"; repLeft "-2942"; repStart "4089"; chr8 rmsk exon 23420093 23421144 8515 + . gene_id "HML6_8p21.3"; transcript_id "HML6_8p21.3"; locus "HML6_8p21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0046"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1885"; repStart "4261"; chr8 rmsk exon 23421140 23422116 7653 + . gene_id "HML6_8p21.3"; transcript_id "HML6_8p21.3"; locus "HML6_8p21.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0046"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "6223"; chr8 rmsk exon 23422117 23422552 3371 + . gene_id "HML6_8p21.3"; transcript_id "HML6_8p21.3"; locus "HML6_8p21.3"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0046"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "-34"; repStart "1"; ### HERV4_8p21.2 ### chr8 rmsk gene 23595652 23596732 . - . gene_id "HERV4_8p21.2"; transcript_id "HERV4_8p21.2"; locus "HERV4_8p21.2"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0069"; model_cov "880"; model_pct "13.5"; chr8 rmsk exon 23595652 23596473 1059 - . gene_id "HERV4_8p21.2"; transcript_id "HERV4_8p21.2"; locus "HERV4_8p21.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0069"; repClass "LTR"; repEnd "3827"; repFamily "ERV1"; repLeft "3002"; repStart "-2712"; chr8 rmsk exon 23596677 23596732 273 - . gene_id "HERV4_8p21.2"; transcript_id "HERV4_8p21.2"; locus "HERV4_8p21.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0069"; repClass "LTR"; repEnd "749"; repFamily "ERV1"; repLeft "694"; repStart "-5790"; ### ERVLE_8p21.2a ### chr8 rmsk gene 24080513 24081075 . - . gene_id "ERVLE_8p21.2a"; transcript_id "ERVLE_8p21.2a"; locus "ERVLE_8p21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2018"; model_cov "650"; model_pct "11.5"; chr8 rmsk exon 24080513 24080651 568 - . gene_id "ERVLE_8p21.2a"; transcript_id "ERVLE_8p21.2a"; locus "ERVLE_8p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2018"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "3742"; repStart "-1776"; chr8 rmsk exon 24080651 24081075 1564 - . gene_id "ERVLE_8p21.2a"; transcript_id "ERVLE_8p21.2a"; locus "ERVLE_8p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2018"; repClass "LTR"; repEnd "3450"; repFamily "ERVL"; repLeft "2949"; repStart "-2217"; ### HARLEQUIN_8p21.2 ### chr8 rmsk gene 24235507 24242893 . + . gene_id "HARLEQUIN_8p21.2"; transcript_id "HARLEQUIN_8p21.2"; locus "HARLEQUIN_8p21.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0107"; model_cov "6752"; model_pct "97.9"; chr8 rmsk exon 24235507 24235953 3297 + . gene_id "HARLEQUIN_8p21.2"; transcript_id "HARLEQUIN_8p21.2"; locus "HARLEQUIN_8p21.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0107"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 24235954 24242746 51757 + . gene_id "HARLEQUIN_8p21.2"; transcript_id "HARLEQUIN_8p21.2"; locus "HARLEQUIN_8p21.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0107"; repClass "LTR"; repEnd "6753"; repFamily "ERV1"; repLeft "-143"; repStart "1"; chr8 rmsk exon 24242747 24242893 1149 + . gene_id "HARLEQUIN_8p21.2"; transcript_id "HARLEQUIN_8p21.2"; locus "HARLEQUIN_8p21.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0107"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "316"; ### HML5_8p21.2 ### chr8 rmsk gene 24386795 24388275 . - . gene_id "HML5_8p21.2"; transcript_id "HML5_8p21.2"; locus "HML5_8p21.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0069"; model_cov "937"; model_pct "13.7"; chr8 rmsk exon 24386795 24386908 807 - . gene_id "HML5_8p21.2"; transcript_id "HML5_8p21.2"; locus "HML5_8p21.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0069"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "343"; repStart "0"; chr8 rmsk exon 24386909 24387825 5971 - . gene_id "HML5_8p21.2"; transcript_id "HML5_8p21.2"; locus "HML5_8p21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0069"; repClass "LTR"; repEnd "938"; repFamily "ERVK"; repLeft "1"; repStart "-5899"; chr8 rmsk exon 24387826 24388275 3385 - . gene_id "HML5_8p21.2"; transcript_id "HML5_8p21.2"; locus "HML5_8p21.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0069"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "5"; repStart "0"; ### ERVLE_8p21.2b ### chr8 rmsk gene 24777308 24778089 . + . gene_id "ERVLE_8p21.2b"; transcript_id "ERVLE_8p21.2b"; locus "ERVLE_8p21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2019"; model_cov "812"; model_pct "14.3"; chr8 rmsk exon 24777308 24778089 1516 + . gene_id "ERVLE_8p21.2b"; transcript_id "ERVLE_8p21.2b"; locus "ERVLE_8p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2019"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "-1946"; repStart "2909"; ### ERV316A3_8p21.2a ### chr8 rmsk gene 24801681 24802697 . - . gene_id "ERV316A3_8p21.2a"; transcript_id "ERV316A3_8p21.2a"; locus "ERV316A3_8p21.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1510"; model_cov "614"; model_pct "11.7"; chr8 rmsk exon 24801681 24802101 1370 - . gene_id "ERV316A3_8p21.2a"; transcript_id "ERV316A3_8p21.2a"; locus "ERV316A3_8p21.2a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1510"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr8 rmsk exon 24802142 24802697 2102 - . gene_id "ERV316A3_8p21.2a"; transcript_id "ERV316A3_8p21.2a"; locus "ERV316A3_8p21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1510"; repClass "LTR"; repEnd "5164"; repFamily "ERVL"; repLeft "4550"; repStart "-62"; ### ERVLE_8p21.2c ### chr8 rmsk gene 24831554 24832837 . + . gene_id "ERVLE_8p21.2c"; transcript_id "ERVLE_8p21.2c"; locus "ERVLE_8p21.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2020"; model_cov "985"; model_pct "17.4"; chr8 rmsk exon 24831554 24832278 730 + . gene_id "ERVLE_8p21.2c"; transcript_id "ERVLE_8p21.2c"; locus "ERVLE_8p21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2020"; repClass "LTR"; repEnd "892"; repFamily "ERVL"; repLeft "-4775"; repStart "143"; chr8 rmsk exon 24832603 24832837 730 + . gene_id "ERVLE_8p21.2c"; transcript_id "ERVLE_8p21.2c"; locus "ERVLE_8p21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2020"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "-4538"; repStart "893"; ### ERVLB4_8p21.2 ### chr8 rmsk gene 25122545 25124527 . + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0903"; model_cov "894"; model_pct "15.6"; chr8 rmsk exon 25122545 25123006 1634 + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0903"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "21"; chr8 rmsk exon 25123009 25123490 2825 + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0903"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-5214"; repStart "4"; chr8 rmsk exon 25123537 25123863 1891 + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0903"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1896"; repStart "3474"; chr8 rmsk exon 25123861 25123915 357 + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0903"; repClass "LTR"; repEnd "4115"; repFamily "ERVL"; repLeft "-1599"; repStart "4061"; chr8 rmsk exon 25124197 25124527 1369 + . gene_id "ERVLB4_8p21.2"; transcript_id "ERVLB4_8p21.2"; locus "ERVLB4_8p21.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0903"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "-197"; repStart "1"; ### ERV316A3_8p21.2b ### chr8 rmsk gene 26060078 26066891 . - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1511"; model_cov "4803"; model_pct "91.9"; chr8 rmsk exon 26060078 26060488 1195 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 26060489 26060697 9372 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5002"; repStart "0"; chr8 rmsk exon 26060974 26062269 9372 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "3628"; repStart "-225"; chr8 rmsk exon 26062569 26064763 9372 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "3627"; repFamily "ERVL"; repLeft "1513"; repStart "-1599"; chr8 rmsk exon 26065308 26066169 1662 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "1513"; repFamily "ERVL"; repLeft "709"; repStart "-3713"; chr8 rmsk exon 26066519 26066650 1662 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "708"; repFamily "ERVL"; repLeft "574"; repStart "-4518"; chr8 rmsk exon 26066740 26066891 365 - . gene_id "ERV316A3_8p21.2b"; transcript_id "ERV316A3_8p21.2b"; locus "ERV316A3_8p21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1511"; repClass "LTR"; repEnd "645"; repFamily "ERVL"; repLeft "491"; repStart "-4581"; ### ERVLE_8p21.2d ### chr8 rmsk gene 26694905 26697663 . - . gene_id "ERVLE_8p21.2d"; transcript_id "ERVLE_8p21.2d"; locus "ERVLE_8p21.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2021"; model_cov "2914"; model_pct "51.4"; chr8 rmsk exon 26694905 26695999 2285 - . gene_id "ERVLE_8p21.2d"; transcript_id "ERVLE_8p21.2d"; locus "ERVLE_8p21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2021"; repClass "LTR"; repEnd "3987"; repFamily "ERVL"; repLeft "2818"; repStart "-1680"; chr8 rmsk exon 26696012 26697663 2440 - . gene_id "ERVLE_8p21.2d"; transcript_id "ERVLE_8p21.2d"; locus "ERVLE_8p21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2021"; repClass "LTR"; repEnd "2761"; repFamily "ERVL"; repLeft "1016"; repStart "-2906"; ### ERVL_8p21.2 ### chr8 rmsk gene 27003326 27006133 . - . gene_id "ERVL_8p21.2"; transcript_id "ERVL_8p21.2"; locus "ERVL_8p21.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0241"; model_cov "2476"; model_pct "43.0"; chr8 rmsk exon 27003326 27004019 1557 - . gene_id "ERVL_8p21.2"; transcript_id "ERVL_8p21.2"; locus "ERVL_8p21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0241"; repClass "LTR"; repEnd "4970"; repFamily "ERVL"; repLeft "4222"; repStart "-787"; chr8 rmsk exon 27004469 27005073 887 - . gene_id "ERVL_8p21.2"; transcript_id "ERVL_8p21.2"; locus "ERVL_8p21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0241"; repClass "LTR"; repEnd "2844"; repFamily "ERVL"; repLeft "2198"; repStart "-2913"; chr8 rmsk exon 27005111 27005685 922 - . gene_id "ERVL_8p21.2"; transcript_id "ERVL_8p21.2"; locus "ERVL_8p21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0241"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "1525"; repStart "-3616"; chr8 rmsk exon 27005681 27006133 744 - . gene_id "ERVL_8p21.2"; transcript_id "ERVL_8p21.2"; locus "ERVL_8p21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0241"; repClass "LTR"; repEnd "1484"; repFamily "ERVL"; repLeft "1018"; repStart "-4273"; ### HERV9_8p21.2 ### chr8 rmsk gene 27492453 27498372 . - . gene_id "HERV9_8p21.2"; transcript_id "HERV9_8p21.2"; locus "HERV9_8p21.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0099"; model_cov "5541"; model_pct "65.7"; chr8 rmsk exon 27492453 27492877 2769 - . gene_id "HERV9_8p21.2"; transcript_id "HERV9_8p21.2"; locus "HERV9_8p21.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0099"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 27492878 27494319 10804 - . gene_id "HERV9_8p21.2"; transcript_id "HERV9_8p21.2"; locus "HERV9_8p21.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0099"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "6989"; repStart "0"; chr8 rmsk exon 27494312 27498372 31770 - . gene_id "HERV9_8p21.2"; transcript_id "HERV9_8p21.2"; locus "HERV9_8p21.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0099"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "1605"; repStart "-2737"; ### ERVLB4_8p21.1a ### chr8 rmsk gene 27660888 27662351 . - . gene_id "ERVLB4_8p21.1a"; transcript_id "ERVLB4_8p21.1a"; locus "ERVLB4_8p21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0905"; model_cov "1142"; model_pct "20.0"; chr8 rmsk exon 27660888 27661218 1335 - . gene_id "ERVLB4_8p21.1a"; transcript_id "ERVLB4_8p21.1a"; locus "ERVLB4_8p21.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0905"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "-2"; repStart "-35"; chr8 rmsk exon 27661219 27662351 16581 - . gene_id "ERVLB4_8p21.1a"; transcript_id "ERVLB4_8p21.1a"; locus "ERVLB4_8p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0905"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4572"; repStart "0"; ### ERVLB4_8p21.1b ### chr8 rmsk gene 27662386 27664144 . - . gene_id "ERVLB4_8p21.1b"; transcript_id "ERVLB4_8p21.1b"; locus "ERVLB4_8p21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0906"; model_cov "1775"; model_pct "31.1"; chr8 rmsk exon 27662386 27664144 16581 - . gene_id "ERVLB4_8p21.1b"; transcript_id "ERVLB4_8p21.1b"; locus "ERVLB4_8p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0906"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3939"; repStart "0"; ### ERV316A3_8p21.1 ### chr8 rmsk gene 28230115 28231140 . + . gene_id "ERV316A3_8p21.1"; transcript_id "ERV316A3_8p21.1"; locus "ERV316A3_8p21.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1512"; model_cov "736"; model_pct "14.1"; chr8 rmsk exon 28230115 28230801 1813 + . gene_id "ERV316A3_8p21.1"; transcript_id "ERV316A3_8p21.1"; locus "ERV316A3_8p21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1512"; repClass "LTR"; repEnd "5213"; repFamily "ERVL"; repLeft "-13"; repStart "4477"; chr8 rmsk exon 28230814 28231140 814 + . gene_id "ERV316A3_8p21.1"; transcript_id "ERV316A3_8p21.1"; locus "ERV316A3_8p21.1"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1512"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### ERVLB4_8p21.1c ### chr8 rmsk gene 28673249 28676426 . + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0907"; model_cov "1489"; model_pct "26.1"; chr8 rmsk exon 28673249 28673676 1352 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "-22"; repStart "-34"; chr8 rmsk exon 28673755 28673811 243 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "-9"; repStart "450"; chr8 rmsk exon 28673816 28674070 8032 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "-5468"; repStart "1"; chr8 rmsk exon 28674372 28675134 8032 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "-4690"; repStart "247"; chr8 rmsk exon 28675631 28675739 8032 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "1124"; repFamily "ERVL"; repLeft "-4590"; repStart "1025"; chr8 rmsk exon 28676049 28676426 8032 + . gene_id "ERVLB4_8p21.1c"; transcript_id "ERVLB4_8p21.1c"; locus "ERVLB4_8p21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0907"; repClass "LTR"; repEnd "1493"; repFamily "ERVL"; repLeft "-4221"; repStart "1125"; ### HML5_8p12 ### chr8 rmsk gene 29315927 29319404 . + . gene_id "HML5_8p12"; transcript_id "HML5_8p12"; locus "HML5_8p12"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0070"; model_cov "868"; model_pct "12.7"; chr8 rmsk exon 29315927 29316067 310 + . gene_id "HML5_8p12"; transcript_id "HML5_8p12"; locus "HML5_8p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0070"; repClass "LTR"; repEnd "846"; repFamily "ERVK"; repLeft "-5991"; repStart "703"; chr8 rmsk exon 29316295 29316461 379 + . gene_id "HML5_8p12"; transcript_id "HML5_8p12"; locus "HML5_8p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0070"; repClass "LTR"; repEnd "1234"; repFamily "ERVK"; repLeft "-5603"; repStart "1068"; chr8 rmsk exon 29317392 29317748 308 + . gene_id "HML5_8p12"; transcript_id "HML5_8p12"; locus "HML5_8p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0070"; repClass "LTR"; repEnd "4063"; repFamily "ERVK"; repLeft "-2774"; repStart "3998"; chr8 rmsk exon 29318910 29319404 613 + . gene_id "HML5_8p12"; transcript_id "HML5_8p12"; locus "HML5_8p12"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0070"; repClass "LTR"; repEnd "6517"; repFamily "ERVK"; repLeft "-320"; repStart "6023"; ### ERVLE_8p12a ### chr8 rmsk gene 29486736 29487964 . - . gene_id "ERVLE_8p12a"; transcript_id "ERVLE_8p12a"; locus "ERVLE_8p12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2024"; model_cov "743"; model_pct "13.1"; chr8 rmsk exon 29486736 29486871 275 - . gene_id "ERVLE_8p12a"; transcript_id "ERVLE_8p12a"; locus "ERVLE_8p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2024"; repClass "LTR"; repEnd "5623"; repFamily "ERVL"; repLeft "5483"; repStart "-44"; chr8 rmsk exon 29487019 29487518 1388 - . gene_id "ERVLE_8p12a"; transcript_id "ERVLE_8p12a"; locus "ERVLE_8p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2024"; repClass "LTR"; repEnd "5273"; repFamily "ERVL"; repLeft "4794"; repStart "-394"; chr8 rmsk exon 29487848 29487964 290 - . gene_id "ERVLE_8p12a"; transcript_id "ERVLE_8p12a"; locus "ERVLE_8p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2024"; repClass "LTR"; repEnd "4803"; repFamily "ERVL"; repLeft "4679"; repStart "-864"; ### ERVLB4_8p12a ### chr8 rmsk gene 29566955 29568758 . - . gene_id "ERVLB4_8p12a"; transcript_id "ERVLB4_8p12a"; locus "ERVLB4_8p12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0908"; model_cov "999"; model_pct "17.5"; chr8 rmsk exon 29566955 29567420 2122 - . gene_id "ERVLB4_8p12a"; transcript_id "ERVLB4_8p12a"; locus "ERVLB4_8p12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0908"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr8 rmsk exon 29567820 29568758 1607 - . gene_id "ERVLB4_8p12a"; transcript_id "ERVLB4_8p12a"; locus "ERVLB4_8p12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0908"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "4338"; repStart "-377"; ### ERVLE_8p12b ### chr8 rmsk gene 30053914 30056259 . - . gene_id "ERVLE_8p12b"; transcript_id "ERVLE_8p12b"; locus "ERVLE_8p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2025"; model_cov "1151"; model_pct "20.3"; chr8 rmsk exon 30053914 30054441 2276 - . gene_id "ERVLE_8p12b"; transcript_id "ERVLE_8p12b"; locus "ERVLE_8p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2025"; repClass "LTR"; repEnd "4512"; repFamily "ERVL"; repLeft "3976"; repStart "-1155"; chr8 rmsk exon 30055307 30055359 329 - . gene_id "ERVLE_8p12b"; transcript_id "ERVLE_8p12b"; locus "ERVLE_8p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2025"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "3589"; repStart "-2024"; chr8 rmsk exon 30055359 30055741 901 - . gene_id "ERVLE_8p12b"; transcript_id "ERVLE_8p12b"; locus "ERVLE_8p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2025"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "1099"; repStart "-4170"; chr8 rmsk exon 30056034 30056259 268 - . gene_id "ERVLE_8p12b"; transcript_id "ERVLE_8p12b"; locus "ERVLE_8p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2025"; repClass "LTR"; repEnd "885"; repFamily "ERVL"; repLeft "722"; repStart "-4782"; ### ERVLB4_8p12b ### chr8 rmsk gene 30057374 30061491 . - . gene_id "ERVLB4_8p12b"; transcript_id "ERVLB4_8p12b"; locus "ERVLB4_8p12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0909"; model_cov "2603"; model_pct "45.6"; chr8 rmsk exon 30057374 30058176 4431 - . gene_id "ERVLB4_8p12b"; transcript_id "ERVLB4_8p12b"; locus "ERVLB4_8p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0909"; repClass "LTR"; repEnd "3113"; repFamily "ERVL"; repLeft "2270"; repStart "-2601"; chr8 rmsk exon 30059381 30059945 3505 - . gene_id "ERVLB4_8p12b"; transcript_id "ERVLB4_8p12b"; locus "ERVLB4_8p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0909"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "1690"; repStart "-3450"; chr8 rmsk exon 30060256 30060391 3505 - . gene_id "ERVLB4_8p12b"; transcript_id "ERVLB4_8p12b"; locus "ERVLB4_8p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0909"; repClass "LTR"; repEnd "1689"; repFamily "ERVL"; repLeft "1558"; repStart "-4025"; chr8 rmsk exon 30060540 30061491 3798 - . gene_id "ERVLB4_8p12b"; transcript_id "ERVLB4_8p12b"; locus "ERVLB4_8p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0909"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "517"; repStart "-4142"; ### HML3_8p12 ### chr8 rmsk gene 30147066 30151892 . - . gene_id "HML3_8p12"; transcript_id "HML3_8p12"; locus "HML3_8p12"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0132"; model_cov "3842"; model_pct "63.8"; chr8 rmsk exon 30147066 30147572 3948 - . gene_id "HML3_8p12"; transcript_id "HML3_8p12"; locus "HML3_8p12"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0132"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 30147573 30148796 10187 - . gene_id "HML3_8p12"; transcript_id "HML3_8p12"; locus "HML3_8p12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0132"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4797"; repStart "0"; chr8 rmsk exon 30148797 30151388 21269 - . gene_id "HML3_8p12"; transcript_id "HML3_8p12"; locus "HML3_8p12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0132"; repClass "LTR"; repEnd "2619"; repFamily "ERVK"; repLeft "1"; repStart "-3402"; chr8 rmsk exon 30151389 30151892 4257 - . gene_id "HML3_8p12"; transcript_id "HML3_8p12"; locus "HML3_8p12"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0132"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_8p12c ### chr8 rmsk gene 30664256 30666863 . - . gene_id "ERVLE_8p12c"; transcript_id "ERVLE_8p12c"; locus "ERVLE_8p12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2027"; model_cov "1190"; model_pct "21.0"; chr8 rmsk exon 30664256 30664535 1850 - . gene_id "ERVLE_8p12c"; transcript_id "ERVLE_8p12c"; locus "ERVLE_8p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2027"; repClass "LTR"; repEnd "2268"; repFamily "ERVL"; repLeft "1987"; repStart "-3399"; chr8 rmsk exon 30664695 30664925 1286 - . gene_id "ERVLE_8p12c"; transcript_id "ERVLE_8p12c"; locus "ERVLE_8p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2027"; repClass "LTR"; repEnd "1439"; repFamily "ERVL"; repLeft "1209"; repStart "-4228"; chr8 rmsk exon 30665928 30665995 2387 - . gene_id "ERVLE_8p12c"; transcript_id "ERVLE_8p12c"; locus "ERVLE_8p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2027"; repClass "LTR"; repEnd "1088"; repFamily "ERVL"; repLeft "1018"; repStart "-4579"; chr8 rmsk exon 30666238 30666863 2387 - . gene_id "ERVLE_8p12c"; transcript_id "ERVLE_8p12c"; locus "ERVLE_8p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2027"; repClass "LTR"; repEnd "1017"; repFamily "ERVL"; repLeft "408"; repStart "-4650"; ### ERVLB4_8p12c ### chr8 rmsk gene 30672305 30674177 . + . gene_id "ERVLB4_8p12c"; transcript_id "ERVLB4_8p12c"; locus "ERVLB4_8p12c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0911"; model_cov "699"; model_pct "12.2"; chr8 rmsk exon 30672305 30672542 3237 + . gene_id "ERVLB4_8p12c"; transcript_id "ERVLB4_8p12c"; locus "ERVLB4_8p12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0911"; repClass "LTR"; repEnd "5227"; repFamily "ERVL"; repLeft "-487"; repStart "4990"; chr8 rmsk exon 30672853 30673316 3237 + . gene_id "ERVLB4_8p12c"; transcript_id "ERVLB4_8p12c"; locus "ERVLB4_8p12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0911"; repClass "LTR"; repEnd "5690"; repFamily "ERVL"; repLeft "-24"; repStart "5228"; chr8 rmsk exon 30673845 30674177 848 + . gene_id "ERVLB4_8p12c"; transcript_id "ERVLB4_8p12c"; locus "ERVLB4_8p12c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0911"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-11"; repStart "91"; ### HERVE_8p12a ### chr8 rmsk gene 30728581 30733679 . + . gene_id "HERVE_8p12a"; transcript_id "HERVE_8p12a"; locus "HERVE_8p12a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0086"; model_cov "4586"; model_pct "58.7"; chr8 rmsk exon 30728581 30729079 3960 + . gene_id "HERVE_8p12a"; transcript_id "HERVE_8p12a"; locus "HERVE_8p12a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0086"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 30729080 30733679 38836 + . gene_id "HERVE_8p12a"; transcript_id "HERVE_8p12a"; locus "HERVE_8p12a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0086"; repClass "LTR"; repEnd "4587"; repFamily "ERV1"; repLeft "-3226"; repStart "1"; ### ERVLB4_8p12d ### chr8 rmsk gene 30940169 30943949 . - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0912"; model_cov "2089"; model_pct "36.6"; chr8 rmsk exon 30940169 30940565 930 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "5623"; repFamily "ERVL"; repLeft "5296"; repStart "-91"; chr8 rmsk exon 30940906 30941233 930 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "4939"; repFamily "ERVL"; repLeft "4611"; repStart "-775"; chr8 rmsk exon 30941545 30941712 930 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "4610"; repFamily "ERVL"; repLeft "4449"; repStart "-1104"; chr8 rmsk exon 30941998 30942075 326 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "4321"; repFamily "ERVL"; repLeft "4233"; repStart "-1393"; chr8 rmsk exon 30942382 30942578 658 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "3933"; repStart "-1580"; chr8 rmsk exon 30942572 30942907 581 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "2216"; repFamily "ERVL"; repLeft "1848"; repStart "-3498"; chr8 rmsk exon 30943351 30943949 532 - . gene_id "ERVLB4_8p12d"; transcript_id "ERVLB4_8p12d"; locus "ERVLB4_8p12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0912"; repClass "LTR"; repEnd "1405"; repFamily "ERVL"; repLeft "789"; repStart "-4309"; ### ERV316A3_8p12a ### chr8 rmsk gene 30978133 30979880 . - . gene_id "ERV316A3_8p12a"; transcript_id "ERV316A3_8p12a"; locus "ERV316A3_8p12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1513"; model_cov "1843"; model_pct "35.3"; chr8 rmsk exon 30978133 30979880 4641 - . gene_id "ERV316A3_8p12a"; transcript_id "ERV316A3_8p12a"; locus "ERV316A3_8p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1513"; repClass "LTR"; repEnd "3851"; repFamily "ERVL"; repLeft "2008"; repStart "-1375"; ### ERV316A3_8p12b ### chr8 rmsk gene 30987942 30989511 . + . gene_id "ERV316A3_8p12b"; transcript_id "ERV316A3_8p12b"; locus "ERV316A3_8p12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1514"; model_cov "1009"; model_pct "19.3"; chr8 rmsk exon 30987942 30988367 1619 + . gene_id "ERV316A3_8p12b"; transcript_id "ERV316A3_8p12b"; locus "ERV316A3_8p12b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1514"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "3"; chr8 rmsk exon 30988370 30989301 2052 + . gene_id "ERV316A3_8p12b"; transcript_id "ERV316A3_8p12b"; locus "ERV316A3_8p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1514"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "-4298"; repStart "5"; chr8 rmsk exon 30989426 30989511 417 + . gene_id "ERV316A3_8p12b"; transcript_id "ERV316A3_8p12b"; locus "ERV316A3_8p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1514"; repClass "LTR"; repEnd "2970"; repFamily "ERVL"; repLeft "-2256"; repStart "2884"; ### ERV316A3_8p12c ### chr8 rmsk gene 30989553 30991768 . + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1515"; model_cov "1235"; model_pct "23.6"; chr8 rmsk exon 30989553 30990028 1104 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "-2413"; repStart "2157"; chr8 rmsk exon 30990299 30990414 264 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "3183"; repFamily "ERVL"; repLeft "-2043"; repStart "3073"; chr8 rmsk exon 30990426 30990667 2012 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "-1463"; repStart "3514"; chr8 rmsk exon 30990970 30991156 2012 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "3948"; repFamily "ERVL"; repLeft "-1278"; repStart "3764"; chr8 rmsk exon 30991155 30991191 256 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-921"; repStart "4269"; chr8 rmsk exon 30991360 30991768 1828 + . gene_id "ERV316A3_8p12c"; transcript_id "ERV316A3_8p12c"; locus "ERV316A3_8p12c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1515"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "51"; ### ERVLE_8p12d ### chr8 rmsk gene 31227666 31229986 . - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2028"; model_cov "1813"; model_pct "32.0"; chr8 rmsk exon 31227666 31227951 835 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "3308"; repFamily "ERVL"; repLeft "3035"; repStart "-2359"; chr8 rmsk exon 31228172 31228458 1024 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "2295"; repFamily "ERVL"; repLeft "2006"; repStart "-3372"; chr8 rmsk exon 31228468 31228662 1131 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "1897"; repFamily "ERVL"; repLeft "1706"; repStart "-3770"; chr8 rmsk exon 31228821 31229254 1131 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "1705"; repFamily "ERVL"; repLeft "1277"; repStart "-3962"; chr8 rmsk exon 31229256 31229661 901 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "898"; repStart "-4369"; chr8 rmsk exon 31229749 31229986 363 - . gene_id "ERVLE_8p12d"; transcript_id "ERVLE_8p12d"; locus "ERVLE_8p12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2028"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "524"; repStart "-4911"; ### ERVLB4_8p12e ### chr8 rmsk gene 31279409 31281873 . - . gene_id "ERVLB4_8p12e"; transcript_id "ERVLB4_8p12e"; locus "ERVLB4_8p12e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0913"; model_cov "998"; model_pct "17.5"; chr8 rmsk exon 31279409 31279763 797 - . gene_id "ERVLB4_8p12e"; transcript_id "ERVLB4_8p12e"; locus "ERVLB4_8p12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0913"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "2834"; repStart "-2514"; chr8 rmsk exon 31281228 31281319 1664 - . gene_id "ERVLB4_8p12e"; transcript_id "ERVLB4_8p12e"; locus "ERVLB4_8p12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0913"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "2491"; repStart "-3134"; chr8 rmsk exon 31281345 31281873 1664 - . gene_id "ERVLB4_8p12e"; transcript_id "ERVLB4_8p12e"; locus "ERVLB4_8p12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0913"; repClass "LTR"; repEnd "2490"; repFamily "ERVL"; repLeft "1947"; repStart "-3224"; ### ERV316A3_8p12d ### chr8 rmsk gene 31348108 31350425 . + . gene_id "ERV316A3_8p12d"; transcript_id "ERV316A3_8p12d"; locus "ERV316A3_8p12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1516"; model_cov "1619"; model_pct "31.0"; chr8 rmsk exon 31348108 31349019 1874 + . gene_id "ERV316A3_8p12d"; transcript_id "ERV316A3_8p12d"; locus "ERV316A3_8p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1516"; repClass "LTR"; repEnd "1927"; repFamily "ERVL"; repLeft "-3299"; repStart "897"; chr8 rmsk exon 31349120 31349593 1217 + . gene_id "ERV316A3_8p12d"; transcript_id "ERV316A3_8p12d"; locus "ERV316A3_8p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1516"; repClass "LTR"; repEnd "2700"; repFamily "ERVL"; repLeft "-2526"; repStart "2211"; chr8 rmsk exon 31349599 31349699 318 + . gene_id "ERV316A3_8p12d"; transcript_id "ERV316A3_8p12d"; locus "ERV316A3_8p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1516"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-758"; repStart "4368"; chr8 rmsk exon 31350003 31350425 914 + . gene_id "ERV316A3_8p12d"; transcript_id "ERV316A3_8p12d"; locus "ERV316A3_8p12d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1516"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_8p12e ### chr8 rmsk gene 31415635 31416250 . - . gene_id "ERVLE_8p12e"; transcript_id "ERVLE_8p12e"; locus "ERVLE_8p12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2029"; model_cov "670"; model_pct "11.8"; chr8 rmsk exon 31415635 31416250 673 - . gene_id "ERVLE_8p12e"; transcript_id "ERVLE_8p12e"; locus "ERVLE_8p12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2029"; repClass "LTR"; repEnd "4811"; repFamily "ERVL"; repLeft "4141"; repStart "-856"; ### MER4B_8p12 ### chr8 rmsk gene 31435555 31436866 . + . gene_id "MER4B_8p12"; transcript_id "MER4B_8p12"; locus "MER4B_8p12"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0232"; model_cov "706"; model_pct "10.4"; chr8 rmsk exon 31435555 31435669 532 + . gene_id "MER4B_8p12"; transcript_id "MER4B_8p12"; locus "MER4B_8p12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0232"; repClass "LTR"; repEnd "3911"; repFamily "ERV1"; repLeft "-2847"; repStart "3794"; chr8 rmsk exon 31436295 31436866 1672 + . gene_id "MER4B_8p12"; transcript_id "MER4B_8p12"; locus "MER4B_8p12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0232"; repClass "LTR"; repEnd "4533"; repFamily "ERV1"; repLeft "-2225"; repStart "3944"; ### ERV316A3_8p12e ### chr8 rmsk gene 31541928 31546982 . - . gene_id "ERV316A3_8p12e"; transcript_id "ERV316A3_8p12e"; locus "ERV316A3_8p12e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1517"; model_cov "2980"; model_pct "57.0"; chr8 rmsk exon 31541928 31542324 1410 - . gene_id "ERV316A3_8p12e"; transcript_id "ERV316A3_8p12e"; locus "ERV316A3_8p12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1517"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "22"; repStart "-2"; chr8 rmsk exon 31542344 31544068 4847 - . gene_id "ERV316A3_8p12e"; transcript_id "ERV316A3_8p12e"; locus "ERV316A3_8p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1517"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3437"; repStart "0"; chr8 rmsk exon 31545390 31546611 2751 - . gene_id "ERV316A3_8p12e"; transcript_id "ERV316A3_8p12e"; locus "ERV316A3_8p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1517"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "2147"; repStart "-1888"; chr8 rmsk exon 31546639 31546982 1120 - . gene_id "ERV316A3_8p12e"; transcript_id "ERV316A3_8p12e"; locus "ERV316A3_8p12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1517"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "16"; repStart "-58"; ### MER34B_8p12 ### chr8 rmsk gene 32498972 32499946 . - . gene_id "MER34B_8p12"; transcript_id "MER34B_8p12"; locus "MER34B_8p12"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0154"; model_cov "555"; model_pct "10.4"; chr8 rmsk exon 32498972 32499400 1196 - . gene_id "MER34B_8p12"; transcript_id "MER34B_8p12"; locus "MER34B_8p12"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0154"; repClass "LTR"; repEnd "5227"; repFamily "ERV1"; repLeft "4944"; repStart "-129"; chr8 rmsk exon 32499699 32499946 1196 - . gene_id "MER34B_8p12"; transcript_id "MER34B_8p12"; locus "MER34B_8p12"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0154"; repClass "LTR"; repEnd "4943"; repFamily "ERV1"; repLeft "4671"; repStart "-413"; ### ERV316A3_8p12f ### chr8 rmsk gene 32951528 32953770 . - . gene_id "ERV316A3_8p12f"; transcript_id "ERV316A3_8p12f"; locus "ERV316A3_8p12f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1518"; model_cov "2271"; model_pct "43.5"; chr8 rmsk exon 32951528 32953770 2835 - . gene_id "ERV316A3_8p12f"; transcript_id "ERV316A3_8p12f"; locus "ERV316A3_8p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1518"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "814"; repStart "-2141"; ### ERV316A3_8p12g ### chr8 rmsk gene 33384075 33385599 . + . gene_id "ERV316A3_8p12g"; transcript_id "ERV316A3_8p12g"; locus "ERV316A3_8p12g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1519"; model_cov "1244"; model_pct "23.8"; chr8 rmsk exon 33384075 33384537 1088 + . gene_id "ERV316A3_8p12g"; transcript_id "ERV316A3_8p12g"; locus "ERV316A3_8p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1519"; repClass "LTR"; repEnd "4243"; repFamily "ERVL"; repLeft "-983"; repStart "3777"; chr8 rmsk exon 33384838 33385599 1088 + . gene_id "ERV316A3_8p12g"; transcript_id "ERV316A3_8p12g"; locus "ERV316A3_8p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1519"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-204"; repStart "4244"; ### ERVLE_8p12f ### chr8 rmsk gene 33829959 33832626 . - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2031"; model_cov "1441"; model_pct "25.4"; chr8 rmsk exon 33829959 33830422 2864 - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2031"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "2400"; repStart "-2787"; chr8 rmsk exon 33830734 33830818 2864 - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2031"; repClass "LTR"; repEnd "2399"; repFamily "ERVL"; repLeft "2330"; repStart "-3268"; chr8 rmsk exon 33831125 33831582 2864 - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2031"; repClass "LTR"; repEnd "2329"; repFamily "ERVL"; repLeft "1860"; repStart "-3338"; chr8 rmsk exon 33832104 33832273 2864 - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2031"; repClass "LTR"; repEnd "1859"; repFamily "ERVL"; repLeft "1674"; repStart "-3808"; chr8 rmsk exon 33832392 33832626 695 - . gene_id "ERVLE_8p12f"; transcript_id "ERVLE_8p12f"; locus "ERVLE_8p12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2031"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "1277"; repStart "-4152"; ### ERV316A3_8p12h ### chr8 rmsk gene 33946908 33949847 . + . gene_id "ERV316A3_8p12h"; transcript_id "ERV316A3_8p12h"; locus "ERV316A3_8p12h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1520"; model_cov "2307"; model_pct "44.1"; chr8 rmsk exon 33946908 33947321 1413 + . gene_id "ERV316A3_8p12h"; transcript_id "ERV316A3_8p12h"; locus "ERV316A3_8p12h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1520"; repClass "LTR"; repEnd "423"; repFamily "ERVL"; repLeft "-15"; repStart "6"; chr8 rmsk exon 33947381 33949489 2651 + . gene_id "ERV316A3_8p12h"; transcript_id "ERV316A3_8p12h"; locus "ERV316A3_8p12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1520"; repClass "LTR"; repEnd "2235"; repFamily "ERVL"; repLeft "-2991"; repStart "74"; chr8 rmsk exon 33949702 33949847 426 + . gene_id "ERV316A3_8p12h"; transcript_id "ERV316A3_8p12h"; locus "ERV316A3_8p12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1520"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "-1897"; repStart "3183"; ### ERV316A3_8p12i ### chr8 rmsk gene 34034527 34036168 . - . gene_id "ERV316A3_8p12i"; transcript_id "ERV316A3_8p12i"; locus "ERV316A3_8p12i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1522"; model_cov "1630"; model_pct "31.2"; chr8 rmsk exon 34034527 34036168 3214 - . gene_id "ERV316A3_8p12i"; transcript_id "ERV316A3_8p12i"; locus "ERV316A3_8p12i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1522"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "2768"; repStart "-828"; ### PRIMA41_8p12 ### chr8 rmsk gene 34086415 34092411 . + . gene_id "PRIMA41_8p12"; transcript_id "PRIMA41_8p12"; locus "PRIMA41_8p12"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0077"; model_cov "5535"; model_pct "71.4"; chr8 rmsk exon 34086415 34089068 16723 + . gene_id "PRIMA41_8p12"; transcript_id "PRIMA41_8p12"; locus "PRIMA41_8p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0077"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "364"; chr8 rmsk exon 34089064 34089287 1626 + . gene_id "PRIMA41_8p12"; transcript_id "PRIMA41_8p12"; locus "PRIMA41_8p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0077"; repClass "LTR"; repEnd "4626"; repFamily "ERV1"; repLeft "-3130"; repStart "4394"; chr8 rmsk exon 34089288 34091903 17633 + . gene_id "PRIMA41_8p12"; transcript_id "PRIMA41_8p12"; locus "PRIMA41_8p12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0077"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "5144"; chr8 rmsk exon 34091904 34092411 3805 + . gene_id "PRIMA41_8p12"; transcript_id "PRIMA41_8p12"; locus "PRIMA41_8p12"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0077"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8p12g ### chr8 rmsk gene 34573666 34576301 . - . gene_id "ERVLE_8p12g"; transcript_id "ERVLE_8p12g"; locus "ERVLE_8p12g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2033"; model_cov "2304"; model_pct "40.7"; chr8 rmsk exon 34573666 34574966 2162 - . gene_id "ERVLE_8p12g"; transcript_id "ERVLE_8p12g"; locus "ERVLE_8p12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2033"; repClass "LTR"; repEnd "3254"; repFamily "ERVL"; repLeft "1891"; repStart "-2413"; chr8 rmsk exon 34575176 34575835 1222 - . gene_id "ERVLE_8p12g"; transcript_id "ERVLE_8p12g"; locus "ERVLE_8p12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2033"; repClass "LTR"; repEnd "1471"; repFamily "ERVL"; repLeft "793"; repStart "-4196"; chr8 rmsk exon 34576043 34576301 303 - . gene_id "ERVLE_8p12g"; transcript_id "ERVLE_8p12g"; locus "ERVLE_8p12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2033"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "297"; repStart "-5107"; ### ERVLE_8p12h ### chr8 rmsk gene 34762207 34763335 . - . gene_id "ERVLE_8p12h"; transcript_id "ERVLE_8p12h"; locus "ERVLE_8p12h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2034"; model_cov "857"; model_pct "15.1"; chr8 rmsk exon 34762207 34762353 300 - . gene_id "ERVLE_8p12h"; transcript_id "ERVLE_8p12h"; locus "ERVLE_8p12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2034"; repClass "LTR"; repEnd "5356"; repFamily "ERVL"; repLeft "5197"; repStart "-311"; chr8 rmsk exon 34762641 34763335 752 - . gene_id "ERVLE_8p12h"; transcript_id "ERVLE_8p12h"; locus "ERVLE_8p12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2034"; repClass "LTR"; repEnd "4832"; repFamily "ERVL"; repLeft "4134"; repStart "-835"; ### HUERSP3B_8p12 ### chr8 rmsk gene 34890114 34898436 . + . gene_id "HUERSP3B_8p12"; transcript_id "HUERSP3B_8p12"; locus "HUERSP3B_8p12"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0073"; model_cov "6511"; model_pct "87.8"; chr8 rmsk exon 34890114 34890710 3991 + . gene_id "HUERSP3B_8p12"; transcript_id "HUERSP3B_8p12"; locus "HUERSP3B_8p12"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0073"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 34890714 34893377 10933 + . gene_id "HUERSP3B_8p12"; transcript_id "HUERSP3B_8p12"; locus "HUERSP3B_8p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0073"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "4"; chr8 rmsk exon 34893807 34895251 8201 + . gene_id "HUERSP3B_8p12"; transcript_id "HUERSP3B_8p12"; locus "HUERSP3B_8p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0073"; repClass "LTR"; repEnd "4475"; repFamily "ERV1"; repLeft "-2943"; repStart "3073"; chr8 rmsk exon 34895977 34898436 15177 + . gene_id "HUERSP3B_8p12"; transcript_id "HUERSP3B_8p12"; locus "HUERSP3B_8p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0073"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "-473"; repStart "4474"; ### ERVLE_8p12i ### chr8 rmsk gene 35030185 35031225 . + . gene_id "ERVLE_8p12i"; transcript_id "ERVLE_8p12i"; locus "ERVLE_8p12i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2036"; model_cov "1023"; model_pct "18.1"; chr8 rmsk exon 35030185 35030311 309 + . gene_id "ERVLE_8p12i"; transcript_id "ERVLE_8p12i"; locus "ERVLE_8p12i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2036"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1035"; repStart "4511"; chr8 rmsk exon 35030315 35031225 1115 + . gene_id "ERVLE_8p12i"; transcript_id "ERVLE_8p12i"; locus "ERVLE_8p12i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2036"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4765"; ### ERVLE_8p12j ### chr8 rmsk gene 35032894 35034133 . + . gene_id "ERVLE_8p12j"; transcript_id "ERVLE_8p12j"; locus "ERVLE_8p12j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2037"; model_cov "715"; model_pct "12.6"; chr8 rmsk exon 35032894 35033331 980 + . gene_id "ERVLE_8p12j"; transcript_id "ERVLE_8p12j"; locus "ERVLE_8p12j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2037"; repClass "LTR"; repEnd "2595"; repFamily "ERVL"; repLeft "-3072"; repStart "2149"; chr8 rmsk exon 35033871 35034133 528 + . gene_id "ERVLE_8p12j"; transcript_id "ERVLE_8p12j"; locus "ERVLE_8p12j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2037"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "-2767"; repStart "2631"; ### HERVL40_8p12 ### chr8 rmsk gene 35921129 35927999 . + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0235"; model_cov "3105"; model_pct "56.1"; chr8 rmsk exon 35921129 35921522 1501 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-7"; repStart "129"; chr8 rmsk exon 35921569 35922050 1040 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "867"; repFamily "ERVL"; repLeft "-4663"; repStart "412"; chr8 rmsk exon 35924357 35924910 1698 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "-3918"; repStart "1039"; chr8 rmsk exon 35924911 35925794 1984 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "3511"; repFamily "ERVL"; repLeft "-2019"; repStart "2524"; chr8 rmsk exon 35925795 35925848 272 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "3539"; repFamily "ERVL"; repLeft "-1991"; repStart "3481"; chr8 rmsk exon 35925837 35926582 2504 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "4492"; repFamily "ERVL"; repLeft "-1038"; repStart "3733"; chr8 rmsk exon 35927158 35927419 914 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "5520"; repFamily "ERVL"; repLeft "-10"; repStart "5247"; chr8 rmsk exon 35927420 35927999 1355 + . gene_id "HERVL40_8p12"; transcript_id "HERVL40_8p12"; locus "HERVL40_8p12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0235"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV9_8p12 ### chr8 rmsk gene 35932066 35939361 . + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0100"; model_cov "5761"; model_pct "68.3"; chr8 rmsk exon 35932066 35932524 3087 + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0100"; repClass "LTR"; repEnd "457"; repFamily "ERV1"; repLeft "-231"; repStart "1"; chr8 rmsk exon 35932525 35936286 19052 + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0100"; repClass "LTR"; repEnd "3854"; repFamily "ERV1"; repLeft "-4582"; repStart "3"; chr8 rmsk exon 35936284 35938069 7440 + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0100"; repClass "LTR"; repEnd "7485"; repFamily "ERV1"; repLeft "-951"; repStart "6347"; chr8 rmsk exon 35938068 35938842 5642 + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0100"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7664"; chr8 rmsk exon 35938843 35939361 3080 + . gene_id "HERV9_8p12"; transcript_id "HERV9_8p12"; locus "HERV9_8p12"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0100"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-234"; repStart "1"; ### HERVE_8p12b ### chr8 rmsk gene 35951628 35960233 . + . gene_id "HERVE_8p12b"; transcript_id "HERVE_8p12b"; locus "HERVE_8p12b"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0087"; model_cov "7809"; model_pct "99.9"; chr8 rmsk exon 35951628 35952014 1313 + . gene_id "HERVE_8p12b"; transcript_id "HERVE_8p12b"; locus "HERVE_8p12b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0087"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "43"; chr8 rmsk exon 35952015 35953668 42534 + . gene_id "HERVE_8p12b"; transcript_id "HERVE_8p12b"; locus "HERVE_8p12b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0087"; repClass "LTR"; repEnd "1667"; repFamily "ERV1"; repLeft "-6146"; repStart "1"; chr8 rmsk exon 35953723 35959814 42534 + . gene_id "HERVE_8p12b"; transcript_id "HERVE_8p12b"; locus "HERVE_8p12b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0087"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "-2"; repStart "1668"; chr8 rmsk exon 35959818 35960233 1312 + . gene_id "HERVE_8p12b"; transcript_id "HERVE_8p12b"; locus "HERVE_8p12b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0087"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "-33"; ### ERVLB4_8p12f ### chr8 rmsk gene 36107914 36114088 . - . gene_id "ERVLB4_8p12f"; transcript_id "ERVLB4_8p12f"; locus "ERVLB4_8p12f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0916"; model_cov "5392"; model_pct "94.4"; chr8 rmsk exon 36107914 36113033 22550 - . gene_id "ERVLB4_8p12f"; transcript_id "ERVLB4_8p12f"; locus "ERVLB4_8p12f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0916"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "57"; repStart "-316"; chr8 rmsk exon 36113329 36113378 3004 - . gene_id "ERVLB4_8p12f"; transcript_id "ERVLB4_8p12f"; locus "ERVLB4_8p12f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0916"; repClass "LTR"; repEnd "56"; repFamily "ERVL"; repLeft "5"; repStart "-5658"; chr8 rmsk exon 36113382 36113500 1745 - . gene_id "ERVLB4_8p12f"; transcript_id "ERVLB4_8p12f"; locus "ERVLB4_8p12f"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0916"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "344"; repStart "-1"; chr8 rmsk exon 36113776 36114088 1745 - . gene_id "ERVLB4_8p12f"; transcript_id "ERVLB4_8p12f"; locus "ERVLB4_8p12f"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0916"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "18"; repStart "-71"; ### HERVL_8p12a ### chr8 rmsk gene 36463738 36467516 . - . gene_id "HERVL_8p12a"; transcript_id "HERVL_8p12a"; locus "HERVL_8p12a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0746"; model_cov "3335"; model_pct "59.0"; chr8 rmsk exon 36463738 36464212 2744 - . gene_id "HERVL_8p12a"; transcript_id "HERVL_8p12a"; locus "HERVL_8p12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0746"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 36464213 36467516 24804 - . gene_id "HERVL_8p12a"; transcript_id "HERVL_8p12a"; locus "HERVL_8p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0746"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2319"; repStart "0"; ### HERVL_8p12b ### chr8 rmsk gene 36529591 36533355 . + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0747"; model_cov "3631"; model_pct "64.2"; chr8 rmsk exon 36529591 36532150 18964 + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0747"; repClass "LTR"; repEnd "2539"; repFamily "ERVL"; repLeft "-3115"; repStart "1"; chr8 rmsk exon 36532151 36533006 5749 + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0747"; repClass "LTR"; repEnd "3227"; repFamily "ERVL"; repLeft "-2427"; repStart "2373"; chr8 rmsk exon 36533010 36533266 1538 + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0747"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5415"; chr8 rmsk exon 36533285 36533324 232 + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0747"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "-190"; repStart "215"; chr8 rmsk exon 36533321 36533355 254 + . gene_id "HERVL_8p12b"; transcript_id "HERVL_8p12b"; locus "HERVL_8p12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0747"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-67"; repStart "343"; ### HERVL18_8p12 ### chr8 rmsk gene 36573737 36576522 . - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0089"; model_cov "1919"; model_pct "31.7"; chr8 rmsk exon 36573737 36574124 2185 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 36574192 36574293 548 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5946"; repStart "0"; chr8 rmsk exon 36574353 36574446 592 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr8 rmsk exon 36574449 36575297 4918 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr8 rmsk exon 36575297 36575711 2271 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "1981"; repStart "-3595"; chr8 rmsk exon 36575712 36576113 2023 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "95"; repStart "-5558"; chr8 rmsk exon 36576138 36576522 2235 - . gene_id "HERVL18_8p12"; transcript_id "HERVL18_8p12"; locus "HERVL18_8p12"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0089"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### ERV316A3_8p11.23a ### chr8 rmsk gene 36710316 36712611 . - . gene_id "ERV316A3_8p11.23a"; transcript_id "ERV316A3_8p11.23a"; locus "ERV316A3_8p11.23a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1526"; model_cov "1546"; model_pct "29.6"; chr8 rmsk exon 36710316 36711356 1684 - . gene_id "ERV316A3_8p11.23a"; transcript_id "ERV316A3_8p11.23a"; locus "ERV316A3_8p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1526"; repClass "LTR"; repEnd "1945"; repFamily "ERVL"; repLeft "877"; repStart "-3281"; chr8 rmsk exon 36711536 36712003 587 - . gene_id "ERV316A3_8p11.23a"; transcript_id "ERV316A3_8p11.23a"; locus "ERV316A3_8p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1526"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "171"; repStart "-4577"; chr8 rmsk exon 36712206 36712611 1258 - . gene_id "ERV316A3_8p11.23a"; transcript_id "ERV316A3_8p11.23a"; locus "ERV316A3_8p11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1526"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLB4_8p11.23a ### chr8 rmsk gene 37116437 37118585 . + . gene_id "ERVLB4_8p11.23a"; transcript_id "ERVLB4_8p11.23a"; locus "ERVLB4_8p11.23a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0917"; model_cov "1853"; model_pct "32.4"; chr8 rmsk exon 37116437 37116800 1049 + . gene_id "ERVLB4_8p11.23a"; transcript_id "ERVLB4_8p11.23a"; locus "ERVLB4_8p11.23a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0917"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "83"; chr8 rmsk exon 37116802 37117345 3276 + . gene_id "ERVLB4_8p11.23a"; transcript_id "ERVLB4_8p11.23a"; locus "ERVLB4_8p11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0917"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "-5171"; repStart "2"; chr8 rmsk exon 37117351 37118585 6684 + . gene_id "ERVLB4_8p11.23a"; transcript_id "ERVLB4_8p11.23a"; locus "ERVLB4_8p11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0917"; repClass "LTR"; repEnd "5677"; repFamily "ERVL"; repLeft "-37"; repStart "4365"; ### ERVLE_8p11.23a ### chr8 rmsk gene 37200874 37202357 . - . gene_id "ERVLE_8p11.23a"; transcript_id "ERVLE_8p11.23a"; locus "ERVLE_8p11.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2042"; model_cov "1192"; model_pct "21.0"; chr8 rmsk exon 37200874 37201486 3574 - . gene_id "ERVLE_8p11.23a"; transcript_id "ERVLE_8p11.23a"; locus "ERVLE_8p11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2042"; repClass "LTR"; repEnd "2714"; repFamily "ERVL"; repLeft "2082"; repStart "-2953"; chr8 rmsk exon 37201817 37202357 3574 - . gene_id "ERVLE_8p11.23a"; transcript_id "ERVLE_8p11.23a"; locus "ERVLE_8p11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2042"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "1521"; repStart "-3586"; ### ERVLE_8p11.23b ### chr8 rmsk gene 37433897 37435461 . - . gene_id "ERVLE_8p11.23b"; transcript_id "ERVLE_8p11.23b"; locus "ERVLE_8p11.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2043"; model_cov "1232"; model_pct "21.7"; chr8 rmsk exon 37433897 37434671 2398 - . gene_id "ERVLE_8p11.23b"; transcript_id "ERVLE_8p11.23b"; locus "ERVLE_8p11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2043"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "1300"; repStart "-3576"; chr8 rmsk exon 37435026 37435461 2398 - . gene_id "ERVLE_8p11.23b"; transcript_id "ERVLE_8p11.23b"; locus "ERVLE_8p11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2043"; repClass "LTR"; repEnd "1321"; repFamily "ERVL"; repLeft "880"; repStart "-4346"; ### ERV316A3_8p11.23b ### chr8 rmsk gene 37569937 37570794 . - . gene_id "ERV316A3_8p11.23b"; transcript_id "ERV316A3_8p11.23b"; locus "ERV316A3_8p11.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1527"; model_cov "524"; model_pct "10.0"; chr8 rmsk exon 37569937 37570059 252 - . gene_id "ERV316A3_8p11.23b"; transcript_id "ERV316A3_8p11.23b"; locus "ERV316A3_8p11.23b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1527"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "56"; repStart "-263"; chr8 rmsk exon 37570244 37570629 1218 - . gene_id "ERV316A3_8p11.23b"; transcript_id "ERV316A3_8p11.23b"; locus "ERV316A3_8p11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1527"; repClass "LTR"; repEnd "5070"; repFamily "ERVL"; repLeft "4660"; repStart "-156"; chr8 rmsk exon 37570682 37570794 301 - . gene_id "ERV316A3_8p11.23b"; transcript_id "ERV316A3_8p11.23b"; locus "ERV316A3_8p11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1527"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "4468"; repStart "-644"; ### HERVH_8p11.23 ### chr8 rmsk gene 38000669 38004122 . - . gene_id "HERVH_8p11.23"; transcript_id "HERVH_8p11.23"; locus "HERVH_8p11.23"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0694"; model_cov "3335"; model_pct "43.2"; chr8 rmsk exon 38000669 38003696 14890 - . gene_id "HERVH_8p11.23"; transcript_id "HERVH_8p11.23"; locus "HERVH_8p11.23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0694"; repClass "LTR"; repEnd "3336"; repFamily "ERV1"; repLeft "1"; repStart "-4377"; chr8 rmsk exon 38003697 38004122 2654 - . gene_id "HERVH_8p11.23"; transcript_id "HERVH_8p11.23"; locus "HERVH_8p11.23"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0694"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_8p11.23 ### chr8 rmsk gene 38014366 38019343 . + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0416"; model_cov "1257"; model_pct "19.1"; chr8 rmsk exon 38014366 38014580 946 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0416"; repClass "LTR"; repEnd "1953"; repFamily "ERV1"; repLeft "-4645"; repStart "1745"; chr8 rmsk exon 38015996 38016357 895 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0416"; repClass "LTR"; repEnd "3270"; repFamily "ERV1"; repLeft "-3328"; repStart "2934"; chr8 rmsk exon 38017190 38017632 3218 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0416"; repClass "LTR"; repEnd "6311"; repFamily "ERV1"; repLeft "-287"; repStart "5880"; chr8 rmsk exon 38017938 38018235 3218 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0416"; repClass "LTR"; repEnd "6573"; repFamily "ERV1"; repLeft "-25"; repStart "6312"; chr8 rmsk exon 38018840 38018865 3218 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0416"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "6576"; chr8 rmsk exon 38018894 38019343 2575 + . gene_id "MER4_8p11.23"; transcript_id "MER4_8p11.23"; locus "MER4_8p11.23"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0416"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_8p11.23 ### chr8 rmsk gene 38016045 38016892 . + . gene_id "LTR57_8p11.23"; transcript_id "LTR57_8p11.23"; locus "LTR57_8p11.23"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0093"; model_cov "555"; model_pct "10.4"; chr8 rmsk exon 38016045 38016114 1559 + . gene_id "LTR57_8p11.23"; transcript_id "LTR57_8p11.23"; locus "LTR57_8p11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0093"; repClass "LTR"; repEnd "1467"; repFamily "ERVL"; repLeft "-3876"; repStart "988"; chr8 rmsk exon 38016816 38016892 1559 + . gene_id "LTR57_8p11.23"; transcript_id "LTR57_8p11.23"; locus "LTR57_8p11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0093"; repClass "LTR"; repEnd "1544"; repFamily "ERVL"; repLeft "-3799"; repStart "1468"; ### ERVLB4_8p11.23b ### chr8 rmsk gene 38223631 38227277 . - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0918"; model_cov "1725"; model_pct "30.2"; chr8 rmsk exon 38223631 38223951 2802 - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0918"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "214"; repStart "-8"; chr8 rmsk exon 38224258 38224457 2802 - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0918"; repClass "LTR"; repEnd "213"; repFamily "ERVL"; repLeft "1"; repStart "-341"; chr8 rmsk exon 38224458 38224775 1942 - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0918"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5388"; repStart "0"; chr8 rmsk exon 38225713 38227140 8671 - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0918"; repClass "LTR"; repEnd "5334"; repFamily "ERVL"; repLeft "3935"; repStart "-380"; chr8 rmsk exon 38227141 38227277 794 - . gene_id "ERVLB4_8p11.23b"; transcript_id "ERVLB4_8p11.23b"; locus "ERVLB4_8p11.23b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_0918"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "1"; repStart "-428"; ### MER41_8p11.22 ### chr8 rmsk gene 39004567 39006262 . - . gene_id "MER41_8p11.22"; transcript_id "MER41_8p11.22"; locus "MER41_8p11.22"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0289"; model_cov "1759"; model_pct "29.6"; chr8 rmsk exon 39004567 39005088 3655 - . gene_id "MER41_8p11.22"; transcript_id "MER41_8p11.22"; locus "MER41_8p11.22"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0289"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-87"; chr8 rmsk exon 39005089 39006262 7159 - . gene_id "MER41_8p11.22"; transcript_id "MER41_8p11.22"; locus "MER41_8p11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0289"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4187"; repStart "0"; ### ERVLB4_8p11.22a ### chr8 rmsk gene 39057485 39064595 . - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0919"; model_cov "5711"; model_pct "99.9"; chr8 rmsk exon 39057485 39057915 1679 - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0919"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "39"; repStart "-76"; chr8 rmsk exon 39057921 39061531 10683 - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0919"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "1897"; repStart "0"; chr8 rmsk exon 39062199 39063459 9908 - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0919"; repClass "LTR"; repEnd "1896"; repFamily "ERVL"; repLeft "633"; repStart "-3818"; chr8 rmsk exon 39063746 39064370 9908 - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0919"; repClass "LTR"; repEnd "632"; repFamily "ERVL"; repLeft "1"; repStart "-5082"; chr8 rmsk exon 39064384 39064595 917 - . gene_id "ERVLB4_8p11.22a"; transcript_id "ERVLB4_8p11.22a"; locus "ERVLB4_8p11.22a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0919"; repClass "LTR"; repEnd "544"; repFamily "ERVL"; repLeft "336"; repStart "-12"; ### ERVLE_8p11.22a ### chr8 rmsk gene 39113325 39114678 . - . gene_id "ERVLE_8p11.22a"; transcript_id "ERVLE_8p11.22a"; locus "ERVLE_8p11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2045"; model_cov "1286"; model_pct "22.7"; chr8 rmsk exon 39113325 39113978 1277 - . gene_id "ERVLE_8p11.22a"; transcript_id "ERVLE_8p11.22a"; locus "ERVLE_8p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2045"; repClass "LTR"; repEnd "3081"; repFamily "ERVL"; repLeft "2325"; repStart "-2586"; chr8 rmsk exon 39114118 39114435 952 - . gene_id "ERVLE_8p11.22a"; transcript_id "ERVLE_8p11.22a"; locus "ERVLE_8p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2045"; repClass "LTR"; repEnd "1992"; repFamily "ERVL"; repLeft "1672"; repStart "-3675"; chr8 rmsk exon 39114482 39114678 564 - . gene_id "ERVLE_8p11.22a"; transcript_id "ERVLE_8p11.22a"; locus "ERVLE_8p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2045"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "1379"; repStart "-4078"; ### ERVLE_8p11.22b ### chr8 rmsk gene 39183557 39185735 . - . gene_id "ERVLE_8p11.22b"; transcript_id "ERVLE_8p11.22b"; locus "ERVLE_8p11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2046"; model_cov "1649"; model_pct "29.1"; chr8 rmsk exon 39183557 39183940 804 - . gene_id "ERVLE_8p11.22b"; transcript_id "ERVLE_8p11.22b"; locus "ERVLE_8p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2046"; repClass "LTR"; repEnd "4702"; repFamily "ERVL"; repLeft "4302"; repStart "-965"; chr8 rmsk exon 39184115 39184658 910 - . gene_id "ERVLE_8p11.22b"; transcript_id "ERVLE_8p11.22b"; locus "ERVLE_8p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2046"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "2166"; repStart "-2956"; chr8 rmsk exon 39184753 39184981 574 - . gene_id "ERVLE_8p11.22b"; transcript_id "ERVLE_8p11.22b"; locus "ERVLE_8p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2046"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "1392"; repStart "-4018"; chr8 rmsk exon 39185282 39185735 574 - . gene_id "ERVLE_8p11.22b"; transcript_id "ERVLE_8p11.22b"; locus "ERVLE_8p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2046"; repClass "LTR"; repEnd "1391"; repFamily "ERVL"; repLeft "944"; repStart "-4276"; ### HUERSP3_8p11.22 ### chr8 rmsk gene 39326061 39330601 . - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0100"; model_cov "4312"; model_pct "48.3"; chr8 rmsk exon 39326061 39326588 2923 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "6730"; repFamily "ERV1"; repLeft "6162"; repStart "-2189"; chr8 rmsk exon 39326563 39326655 3857 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "5589"; repFamily "ERV1"; repLeft "5501"; repStart "-3330"; chr8 rmsk exon 39326970 39327511 3857 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "5500"; repFamily "ERV1"; repLeft "4966"; repStart "-3419"; chr8 rmsk exon 39327551 39327695 786 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4539"; repStart "-4239"; chr8 rmsk exon 39327689 39330034 7722 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "406"; repStart "-5635"; chr8 rmsk exon 39330030 39330127 373 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "1605"; repFamily "ERV1"; repLeft "1502"; repStart "-7314"; chr8 rmsk exon 39330147 39330601 1848 - . gene_id "HUERSP3_8p11.22"; transcript_id "HUERSP3_8p11.22"; locus "HUERSP3_8p11.22"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0100"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "7"; repStart "-163"; ### ERV316A3_8p11.22a ### chr8 rmsk gene 39427651 39429431 . + . gene_id "ERV316A3_8p11.22a"; transcript_id "ERV316A3_8p11.22a"; locus "ERV316A3_8p11.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1528"; model_cov "752"; model_pct "14.4"; chr8 rmsk exon 39427651 39428113 597 + . gene_id "ERV316A3_8p11.22a"; transcript_id "ERV316A3_8p11.22a"; locus "ERV316A3_8p11.22a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1528"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr8 rmsk exon 39428140 39428346 785 + . gene_id "ERV316A3_8p11.22a"; transcript_id "ERV316A3_8p11.22a"; locus "ERV316A3_8p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1528"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "-4995"; repStart "32"; chr8 rmsk exon 39428659 39429050 785 + . gene_id "ERV316A3_8p11.22a"; transcript_id "ERV316A3_8p11.22a"; locus "ERV316A3_8p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1528"; repClass "LTR"; repEnd "621"; repFamily "ERVL"; repLeft "-4605"; repStart "232"; chr8 rmsk exon 39429273 39429431 303 + . gene_id "ERV316A3_8p11.22a"; transcript_id "ERV316A3_8p11.22a"; locus "ERV316A3_8p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1528"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "-186"; repStart "4876"; ### HUERSP2_8p11.22 ### chr8 rmsk gene 39446961 39450933 . + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0070"; model_cov "2667"; model_pct "86.4"; chr8 rmsk exon 39446961 39447399 4529 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-377"; repStart "1"; chr8 rmsk exon 39447871 39448220 4529 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "0"; repStart "448"; chr8 rmsk exon 39448222 39448386 14378 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "-2912"; repStart "2"; chr8 rmsk exon 39448416 39449612 14378 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "1440"; repFamily "ERV1"; repLeft "-1648"; repStart "177"; chr8 rmsk exon 39449665 39450828 14378 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "2671"; repFamily "ERV1"; repLeft "-417"; repStart "1441"; chr8 rmsk exon 39450847 39450933 512 + . gene_id "HUERSP2_8p11.22"; transcript_id "HUERSP2_8p11.22"; locus "HUERSP2_8p11.22"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0070"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "0"; repStart "736"; ### PRIMA4_8p11.22 ### chr8 rmsk gene 39481097 39487156 . + . gene_id "PRIMA4_8p11.22"; transcript_id "PRIMA4_8p11.22"; locus "PRIMA4_8p11.22"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0114"; model_cov "3372"; model_pct "40.8"; chr8 rmsk exon 39481097 39481562 832 + . gene_id "PRIMA4_8p11.22"; transcript_id "PRIMA4_8p11.22"; locus "PRIMA4_8p11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0114"; repClass "LTR"; repEnd "3732"; repFamily "ERV1"; repLeft "-4538"; repStart "3267"; chr8 rmsk exon 39482396 39485061 1786 + . gene_id "PRIMA4_8p11.22"; transcript_id "PRIMA4_8p11.22"; locus "PRIMA4_8p11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0114"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1847"; repStart "3718"; chr8 rmsk exon 39486973 39487156 519 + . gene_id "PRIMA4_8p11.22"; transcript_id "PRIMA4_8p11.22"; locus "PRIMA4_8p11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0114"; repClass "LTR"; repEnd "8264"; repFamily "ERV1"; repLeft "-6"; repStart "8062"; ### ERV316A3_8p11.22b ### chr8 rmsk gene 39670778 39673033 . + . gene_id "ERV316A3_8p11.22b"; transcript_id "ERV316A3_8p11.22b"; locus "ERV316A3_8p11.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1529"; model_cov "1681"; model_pct "32.2"; chr8 rmsk exon 39670778 39671068 647 + . gene_id "ERV316A3_8p11.22b"; transcript_id "ERV316A3_8p11.22b"; locus "ERV316A3_8p11.22b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1529"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "-80"; repStart "77"; chr8 rmsk exon 39671338 39671547 380 + . gene_id "ERV316A3_8p11.22b"; transcript_id "ERV316A3_8p11.22b"; locus "ERV316A3_8p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1529"; repClass "LTR"; repEnd "729"; repFamily "ERVL"; repLeft "-4497"; repStart "491"; chr8 rmsk exon 39671746 39673033 2750 + . gene_id "ERV316A3_8p11.22b"; transcript_id "ERV316A3_8p11.22b"; locus "ERV316A3_8p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1529"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-2823"; repStart "960"; ### ERV316A3_8p11.22c ### chr8 rmsk gene 39774888 39776449 . - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1532"; model_cov "697"; model_pct "13.3"; chr8 rmsk exon 39774888 39775130 586 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "286"; repStart "0"; chr8 rmsk exon 39775200 39775557 656 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "3894"; repFamily "ERVL"; repLeft "3519"; repStart "-1332"; chr8 rmsk exon 39775688 39775841 295 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "3366"; repFamily "ERVL"; repLeft "3214"; repStart "-1860"; chr8 rmsk exon 39775973 39776138 436 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "3076"; repFamily "ERVL"; repLeft "2906"; repStart "-2150"; chr8 rmsk exon 39776275 39776326 246 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "467"; repStart "-17"; chr8 rmsk exon 39776361 39776449 331 - . gene_id "ERV316A3_8p11.22c"; transcript_id "ERV316A3_8p11.22c"; locus "ERV316A3_8p11.22c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1532"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "286"; repStart "-158"; ### ERVLB4_8p11.22b ### chr8 rmsk gene 39819442 39820650 . + . gene_id "ERVLB4_8p11.22b"; transcript_id "ERVLB4_8p11.22b"; locus "ERVLB4_8p11.22b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0921"; model_cov "754"; model_pct "13.2"; chr8 rmsk exon 39819442 39819795 1596 + . gene_id "ERVLB4_8p11.22b"; transcript_id "ERVLB4_8p11.22b"; locus "ERVLB4_8p11.22b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0921"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr8 rmsk exon 39819894 39820650 3129 + . gene_id "ERVLB4_8p11.22b"; transcript_id "ERVLB4_8p11.22b"; locus "ERVLB4_8p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0921"; repClass "LTR"; repEnd "802"; repFamily "ERVL"; repLeft "-4912"; repStart "48"; ### HERVIP10F_8p11.22 ### chr8 rmsk gene 39848200 39853109 . - . gene_id "HERVIP10F_8p11.22"; transcript_id "HERVIP10F_8p11.22"; locus "HERVIP10F_8p11.22"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0058"; model_cov "4340"; model_pct "56.1"; chr8 rmsk exon 39848200 39852577 20201 - . gene_id "HERVIP10F_8p11.22"; transcript_id "HERVIP10F_8p11.22"; locus "HERVIP10F_8p11.22"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0058"; repClass "LTR"; repEnd "4298"; repFamily "ERV1"; repLeft "-42"; repStart "-3439"; chr8 rmsk exon 39852578 39853109 2823 - . gene_id "HERVIP10F_8p11.22"; transcript_id "HERVIP10F_8p11.22"; locus "HERVIP10F_8p11.22"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0058"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### HML3_8p11.22 ### chr8 rmsk gene 39870385 39876006 . + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0133"; model_cov "4262"; model_pct "70.8"; chr8 rmsk exon 39870385 39870895 4102 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 39870896 39872754 18702 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "1858"; repFamily "ERVK"; repLeft "-4163"; repStart "1"; chr8 rmsk exon 39873063 39873694 18702 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "-3540"; repStart "1859"; chr8 rmsk exon 39873694 39873823 1011 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "2796"; repFamily "ERVK"; repLeft "-3225"; repStart "2666"; chr8 rmsk exon 39873829 39874053 1652 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3727"; chr8 rmsk exon 39874053 39875482 10806 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4594"; chr8 rmsk exon 39875483 39876006 4088 + . gene_id "HML3_8p11.22"; transcript_id "HML3_8p11.22"; locus "HML3_8p11.22"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0133"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_8p11.22 ### chr8 rmsk gene 39876007 39885741 . - . gene_id "HERV9_8p11.22"; transcript_id "HERV9_8p11.22"; locus "HERV9_8p11.22"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0101"; model_cov "8435"; model_pct "100.0"; chr8 rmsk exon 39876007 39876628 3868 - . gene_id "HERV9_8p11.22"; transcript_id "HERV9_8p11.22"; locus "HERV9_8p11.22"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0101"; repClass "LTR"; repEnd "746"; repFamily "ERV1"; repLeft "-495"; repStart "-80"; chr8 rmsk exon 39876629 39884959 57619 - . gene_id "HERV9_8p11.22"; transcript_id "HERV9_8p11.22"; locus "HERV9_8p11.22"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0101"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 39884960 39885741 4884 - . gene_id "HERV9_8p11.22"; transcript_id "HERV9_8p11.22"; locus "HERV9_8p11.22"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0101"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_8p11.21a ### chr8 rmsk gene 40052608 40053194 . - . gene_id "ERVLB4_8p11.21a"; transcript_id "ERVLB4_8p11.21a"; locus "ERVLB4_8p11.21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0922"; model_cov "603"; model_pct "10.6"; chr8 rmsk exon 40052608 40053194 1232 - . gene_id "ERVLB4_8p11.21a"; transcript_id "ERVLB4_8p11.21a"; locus "ERVLB4_8p11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0922"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "3970"; repStart "-1141"; ### ERVLB4_8p11.21b ### chr8 rmsk gene 41102306 41103412 . + . gene_id "ERVLB4_8p11.21b"; transcript_id "ERVLB4_8p11.21b"; locus "ERVLB4_8p11.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0923"; model_cov "730"; model_pct "12.8"; chr8 rmsk exon 41102306 41102418 502 + . gene_id "ERVLB4_8p11.21b"; transcript_id "ERVLB4_8p11.21b"; locus "ERVLB4_8p11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0923"; repClass "LTR"; repEnd "875"; repFamily "ERVL"; repLeft "-4839"; repStart "747"; chr8 rmsk exon 41102790 41103412 3104 + . gene_id "ERVLB4_8p11.21b"; transcript_id "ERVLB4_8p11.21b"; locus "ERVLB4_8p11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0923"; repClass "LTR"; repEnd "5655"; repFamily "ERVL"; repLeft "-59"; repStart "5053"; ### ERVLE_8p11.21a ### chr8 rmsk gene 41211009 41212513 . + . gene_id "ERVLE_8p11.21a"; transcript_id "ERVLE_8p11.21a"; locus "ERVLE_8p11.21a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2048"; model_cov "877"; model_pct "15.5"; chr8 rmsk exon 41211009 41211303 534 + . gene_id "ERVLE_8p11.21a"; transcript_id "ERVLE_8p11.21a"; locus "ERVLE_8p11.21a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2048"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "-347"; repStart "5"; chr8 rmsk exon 41211632 41211997 1540 + . gene_id "ERVLE_8p11.21a"; transcript_id "ERVLE_8p11.21a"; locus "ERVLE_8p11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2048"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "-5062"; repStart "230"; chr8 rmsk exon 41212016 41212513 1871 + . gene_id "ERVLE_8p11.21a"; transcript_id "ERVLE_8p11.21a"; locus "ERVLE_8p11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2048"; repClass "LTR"; repEnd "1159"; repFamily "ERVL"; repLeft "-4508"; repStart "657"; ### ERVLE_8p11.21b ### chr8 rmsk gene 41215556 41221177 . + . gene_id "ERVLE_8p11.21b"; transcript_id "ERVLE_8p11.21b"; locus "ERVLE_8p11.21b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2049"; model_cov "3696"; model_pct "65.2"; chr8 rmsk exon 41215556 41216043 1560 + . gene_id "ERVLE_8p11.21b"; transcript_id "ERVLE_8p11.21b"; locus "ERVLE_8p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2049"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "-3097"; repStart "2052"; chr8 rmsk exon 41217127 41219556 11777 + . gene_id "ERVLE_8p11.21b"; transcript_id "ERVLE_8p11.21b"; locus "ERVLE_8p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2049"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-638"; repStart "2487"; chr8 rmsk exon 41220021 41220613 11777 + . gene_id "ERVLE_8p11.21b"; transcript_id "ERVLE_8p11.21b"; locus "ERVLE_8p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2049"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5030"; chr8 rmsk exon 41220685 41221177 1115 + . gene_id "ERVLE_8p11.21b"; transcript_id "ERVLE_8p11.21b"; locus "ERVLE_8p11.21b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2049"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "-109"; repStart "27"; ### ERV316A3_8p11.21 ### chr8 rmsk gene 41416063 41417950 . + . gene_id "ERV316A3_8p11.21"; transcript_id "ERV316A3_8p11.21"; locus "ERV316A3_8p11.21"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1533"; model_cov "1446"; model_pct "27.7"; chr8 rmsk exon 41416063 41416375 416 + . gene_id "ERV316A3_8p11.21"; transcript_id "ERV316A3_8p11.21"; locus "ERV316A3_8p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1533"; repClass "LTR"; repEnd "1476"; repFamily "ERVL"; repLeft "-3750"; repStart "1147"; chr8 rmsk exon 41416504 41416768 1160 + . gene_id "ERV316A3_8p11.21"; transcript_id "ERV316A3_8p11.21"; locus "ERV316A3_8p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1533"; repClass "LTR"; repEnd "1635"; repFamily "ERVL"; repLeft "-3591"; repStart "1383"; chr8 rmsk exon 41417089 41417950 1160 + . gene_id "ERV316A3_8p11.21"; transcript_id "ERV316A3_8p11.21"; locus "ERV316A3_8p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1533"; repClass "LTR"; repEnd "2501"; repFamily "ERVL"; repLeft "-2725"; repStart "1636"; ### ERVL_8p11.21a ### chr8 rmsk gene 41431638 41434046 . + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0242"; model_cov "892"; model_pct "15.5"; chr8 rmsk exon 41431638 41432208 5620 + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0242"; repClass "LTR"; repEnd "5425"; repFamily "ERVL"; repLeft "-332"; repStart "4864"; chr8 rmsk exon 41432499 41432837 5620 + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0242"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5426"; chr8 rmsk exon 41432839 41433308 2200 + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0242"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-71"; repStart "2"; chr8 rmsk exon 41433385 41433426 2200 + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0242"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "450"; chr8 rmsk exon 41433431 41434046 2549 + . gene_id "ERVL_8p11.21a"; transcript_id "ERVL_8p11.21a"; locus "ERVL_8p11.21a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0242"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5"; repStart "-46"; ### HERVEA_8p11.21 ### chr8 rmsk gene 41590939 41593548 . - . gene_id "HERVEA_8p11.21"; transcript_id "HERVEA_8p11.21"; locus "HERVEA_8p11.21"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0052"; model_cov "2129"; model_pct "27.1"; chr8 rmsk exon 41590939 41591397 3255 - . gene_id "HERVEA_8p11.21"; transcript_id "HERVEA_8p11.21"; locus "HERVEA_8p11.21"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0052"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 41591439 41593548 17035 - . gene_id "HERVEA_8p11.21"; transcript_id "HERVEA_8p11.21"; locus "HERVEA_8p11.21"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0052"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "5718"; repStart "0"; ### HARLEQUIN_8p11.21 ### chr8 rmsk gene 41593545 41597227 . - . gene_id "HARLEQUIN_8p11.21"; transcript_id "HARLEQUIN_8p11.21"; locus "HARLEQUIN_8p11.21"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0108"; model_cov "2932"; model_pct "42.5"; chr8 rmsk exon 41593545 41594546 21073 - . gene_id "HARLEQUIN_8p11.21"; transcript_id "HARLEQUIN_8p11.21"; locus "HARLEQUIN_8p11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0108"; repClass "LTR"; repEnd "2935"; repFamily "ERV1"; repLeft "1910"; repStart "-3961"; chr8 rmsk exon 41594845 41595325 21073 - . gene_id "HARLEQUIN_8p11.21"; transcript_id "HARLEQUIN_8p11.21"; locus "HARLEQUIN_8p11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0108"; repClass "LTR"; repEnd "1909"; repFamily "ERV1"; repLeft "1403"; repStart "-4987"; chr8 rmsk exon 41595354 41596763 21073 - . gene_id "HARLEQUIN_8p11.21"; transcript_id "HARLEQUIN_8p11.21"; locus "HARLEQUIN_8p11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0108"; repClass "LTR"; repEnd "1402"; repFamily "ERV1"; repLeft "1"; repStart "-5494"; chr8 rmsk exon 41596764 41597227 3373 - . gene_id "HARLEQUIN_8p11.21"; transcript_id "HARLEQUIN_8p11.21"; locus "HARLEQUIN_8p11.21"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0108"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER34B_8p11.21 ### chr8 rmsk gene 41812198 41817154 . - . gene_id "MER34B_8p11.21"; transcript_id "MER34B_8p11.21"; locus "MER34B_8p11.21"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0157"; model_cov "4283"; model_pct "80.0"; chr8 rmsk exon 41812198 41812656 2373 - . gene_id "MER34B_8p11.21"; transcript_id "MER34B_8p11.21"; locus "MER34B_8p11.21"; repName "MER34C2"; geneRegion "ltr"; locid "MER34B-int_0157"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "73"; repStart "0"; chr8 rmsk exon 41813037 41814079 4431 - . gene_id "MER34B_8p11.21"; transcript_id "MER34B_8p11.21"; locus "MER34B_8p11.21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0157"; repClass "LTR"; repEnd "5154"; repFamily "ERV1"; repLeft "3433"; repStart "-202"; chr8 rmsk exon 41814377 41816390 4955 - . gene_id "MER34B_8p11.21"; transcript_id "MER34B_8p11.21"; locus "MER34B_8p11.21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0157"; repClass "LTR"; repEnd "3741"; repFamily "ERV1"; repLeft "1683"; repStart "-1615"; chr8 rmsk exon 41817013 41817154 4955 - . gene_id "MER34B_8p11.21"; transcript_id "MER34B_8p11.21"; locus "MER34B_8p11.21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0157"; repClass "LTR"; repEnd "1682"; repFamily "ERV1"; repLeft "1178"; repStart "-3674"; ### ERVLE_8p11.21c ### chr8 rmsk gene 42066407 42068326 . - . gene_id "ERVLE_8p11.21c"; transcript_id "ERVLE_8p11.21c"; locus "ERVLE_8p11.21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2051"; model_cov "1290"; model_pct "22.8"; chr8 rmsk exon 42066407 42067283 2092 - . gene_id "ERVLE_8p11.21c"; transcript_id "ERVLE_8p11.21c"; locus "ERVLE_8p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2051"; repClass "LTR"; repEnd "4517"; repFamily "ERVL"; repLeft "3633"; repStart "-1150"; chr8 rmsk exon 42067593 42067775 2092 - . gene_id "ERVLE_8p11.21c"; transcript_id "ERVLE_8p11.21c"; locus "ERVLE_8p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2051"; repClass "LTR"; repEnd "3632"; repFamily "ERVL"; repLeft "3471"; repStart "-2035"; chr8 rmsk exon 42068078 42068326 2092 - . gene_id "ERVLE_8p11.21c"; transcript_id "ERVLE_8p11.21c"; locus "ERVLE_8p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2051"; repClass "LTR"; repEnd "3470"; repFamily "ERVL"; repLeft "3225"; repStart "-2197"; ### HERV9_8p11.21 ### chr8 rmsk gene 42559708 42568450 . - . gene_id "HERV9_8p11.21"; transcript_id "HERV9_8p11.21"; locus "HERV9_8p11.21"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0102"; model_cov "7510"; model_pct "89.0"; chr8 rmsk exon 42559708 42560237 3611 - . gene_id "HERV9_8p11.21"; transcript_id "HERV9_8p11.21"; locus "HERV9_8p11.21"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0102"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 42560240 42561269 8855 - . gene_id "HERV9_8p11.21"; transcript_id "HERV9_8p11.21"; locus "HERV9_8p11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0102"; repClass "LTR"; repEnd "8433"; repFamily "ERV1"; repLeft "7401"; repStart "-3"; chr8 rmsk exon 42561270 42567789 46415 - . gene_id "HERV9_8p11.21"; transcript_id "HERV9_8p11.21"; locus "HERV9_8p11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0102"; repClass "LTR"; repEnd "6479"; repFamily "ERV1"; repLeft "1"; repStart "-1957"; chr8 rmsk exon 42567790 42568450 5154 - . gene_id "HERV9_8p11.21"; transcript_id "HERV9_8p11.21"; locus "HERV9_8p11.21"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0102"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_8p11.21b ### chr8 rmsk gene 42823060 42823839 . - . gene_id "ERVL_8p11.21b"; transcript_id "ERVL_8p11.21b"; locus "ERVL_8p11.21b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0243"; model_cov "778"; model_pct "13.5"; chr8 rmsk exon 42823060 42823839 4935 - . gene_id "ERVL_8p11.21b"; transcript_id "ERVL_8p11.21b"; locus "ERVL_8p11.21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0243"; repClass "LTR"; repEnd "3718"; repFamily "ERVL"; repLeft "2940"; repStart "-2039"; ### MER41_8p11.21 ### chr8 rmsk gene 43106829 43110635 . - . gene_id "MER41_8p11.21"; transcript_id "MER41_8p11.21"; locus "MER41_8p11.21"; category "internal"; intModel "MER41-int"; locid "MER41-int_0290"; model_cov "3247"; model_pct "54.6"; chr8 rmsk exon 43106829 43107381 12211 - . gene_id "MER41_8p11.21"; transcript_id "MER41_8p11.21"; locus "MER41_8p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0290"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4905"; repStart "0"; chr8 rmsk exon 43107661 43107681 12211 - . gene_id "MER41_8p11.21"; transcript_id "MER41_8p11.21"; locus "MER41_8p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0290"; repClass "LTR"; repEnd "5221"; repFamily "ERV1"; repLeft "5219"; repStart "-725"; chr8 rmsk exon 43107982 43109534 12211 - . gene_id "MER41_8p11.21"; transcript_id "MER41_8p11.21"; locus "MER41_8p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0290"; repClass "LTR"; repEnd "5218"; repFamily "ERV1"; repLeft "3661"; repStart "-728"; chr8 rmsk exon 43109840 43110635 12211 - . gene_id "MER41_8p11.21"; transcript_id "MER41_8p11.21"; locus "MER41_8p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0290"; repClass "LTR"; repEnd "3660"; repFamily "ERV1"; repLeft "3013"; repStart "-2286"; ### MER61_8p11.21 ### chr8 rmsk gene 43134411 43139620 . + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0224"; model_cov "3818"; model_pct "73.2"; chr8 rmsk exon 43134411 43134467 447 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0224"; repClass "LTR"; repEnd "57"; repFamily "ERV1"; repLeft "-284"; repStart "1"; chr8 rmsk exon 43134468 43134584 648 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "590"; chr8 rmsk exon 43134614 43135190 19312 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "1946"; repFamily "ERV1"; repLeft "-3271"; repStart "1318"; chr8 rmsk exon 43135487 43136598 19312 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "3063"; repFamily "ERV1"; repLeft "-2154"; repStart "1947"; chr8 rmsk exon 43136889 43137949 19312 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-1129"; repStart "3064"; chr8 rmsk exon 43137928 43138567 3569 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "4955"; repFamily "ERV1"; repLeft "-262"; repStart "4280"; chr8 rmsk exon 43139058 43139293 2049 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0224"; repClass "LTR"; repEnd "5214"; repFamily "ERV1"; repLeft "-3"; repStart "4956"; chr8 rmsk exon 43139296 43139620 1938 + . gene_id "MER61_8p11.21"; transcript_id "MER61_8p11.21"; locus "MER61_8p11.21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0224"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### MER4_8p11.1a ### chr8 rmsk gene 43367916 43370097 . + . gene_id "MER4_8p11.1a"; transcript_id "MER4_8p11.1a"; locus "MER4_8p11.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0417"; model_cov "1503"; model_pct "22.8"; chr8 rmsk exon 43367916 43367971 2145 + . gene_id "MER4_8p11.1a"; transcript_id "MER4_8p11.1a"; locus "MER4_8p11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0417"; repClass "LTR"; repEnd "95"; repFamily "ERV1"; repLeft "-6503"; repStart "29"; chr8 rmsk exon 43368286 43369247 2145 + . gene_id "MER4_8p11.1a"; transcript_id "MER4_8p11.1a"; locus "MER4_8p11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0417"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "-5502"; repStart "96"; chr8 rmsk exon 43369383 43369692 1178 + . gene_id "MER4_8p11.1a"; transcript_id "MER4_8p11.1a"; locus "MER4_8p11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0417"; repClass "LTR"; repEnd "2481"; repFamily "ERV1"; repLeft "-4117"; repStart "2146"; chr8 rmsk exon 43369993 43370097 1178 + . gene_id "MER4_8p11.1a"; transcript_id "MER4_8p11.1a"; locus "MER4_8p11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0417"; repClass "LTR"; repEnd "2584"; repFamily "ERV1"; repLeft "-4014"; repStart "2482"; ### MER4_8p11.1b ### chr8 rmsk gene 43372801 43373738 . + . gene_id "MER4_8p11.1b"; transcript_id "MER4_8p11.1b"; locus "MER4_8p11.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0418"; model_cov "928"; model_pct "14.1"; chr8 rmsk exon 43372801 43373326 1854 + . gene_id "MER4_8p11.1b"; transcript_id "MER4_8p11.1b"; locus "MER4_8p11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0418"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "107"; chr8 rmsk exon 43373313 43373418 435 + . gene_id "MER4_8p11.1b"; transcript_id "MER4_8p11.1b"; locus "MER4_8p11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0418"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-723"; chr8 rmsk exon 43373512 43373738 577 + . gene_id "MER4_8p11.1b"; transcript_id "MER4_8p11.1b"; locus "MER4_8p11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0418"; repClass "LTR"; repEnd "1120"; repFamily "ERV1"; repLeft "-5478"; repStart "861"; ### HUERSP3_8p11.1a ### chr8 rmsk gene 43429898 43432368 . + . gene_id "HUERSP3_8p11.1a"; transcript_id "HUERSP3_8p11.1a"; locus "HUERSP3_8p11.1a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0102"; model_cov "1912"; model_pct "21.4"; chr8 rmsk exon 43429898 43430259 1950 + . gene_id "HUERSP3_8p11.1a"; transcript_id "HUERSP3_8p11.1a"; locus "HUERSP3_8p11.1a"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0102"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "273"; chr8 rmsk exon 43430280 43430364 2557 + . gene_id "HUERSP3_8p11.1a"; transcript_id "HUERSP3_8p11.1a"; locus "HUERSP3_8p11.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0102"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-8823"; repStart "37"; chr8 rmsk exon 43430616 43432241 5288 + . gene_id "HUERSP3_8p11.1a"; transcript_id "HUERSP3_8p11.1a"; locus "HUERSP3_8p11.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0102"; repClass "LTR"; repEnd "3324"; repFamily "ERV1"; repLeft "-5595"; repStart "1598"; chr8 rmsk exon 43432241 43432368 916 + . gene_id "HUERSP3_8p11.1a"; transcript_id "HUERSP3_8p11.1a"; locus "HUERSP3_8p11.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0102"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "-6590"; repStart "2202"; ### HUERSP3_8p11.1b ### chr8 rmsk gene 43434884 43439997 . + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0103"; model_cov "3674"; model_pct "41.2"; chr8 rmsk exon 43434884 43434989 481 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-6484"; repStart "2330"; chr8 rmsk exon 43435164 43435892 5538 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "3163"; repFamily "ERV1"; repLeft "-5756"; repStart "2425"; chr8 rmsk exon 43435927 43436042 5538 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "3283"; repFamily "ERV1"; repLeft "-5636"; repStart "3164"; chr8 rmsk exon 43436037 43437627 14060 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "6199"; repFamily "ERV1"; repLeft "-2720"; repStart "4540"; chr8 rmsk exon 43437690 43438449 14060 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "6994"; repFamily "ERV1"; repLeft "-1925"; repStart "6200"; chr8 rmsk exon 43439130 43439418 1545 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8659"; chr8 rmsk exon 43439419 43439997 3387 + . gene_id "HUERSP3_8p11.1b"; transcript_id "HUERSP3_8p11.1b"; locus "HUERSP3_8p11.1b"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0103"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "-14"; repStart "1"; ### HERVS71_8p11.1 ### chr8 rmsk gene 43551325 43561237 . - . gene_id "HERVS71_8p11.1"; transcript_id "HERVS71_8p11.1"; locus "HERVS71_8p11.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0026"; model_cov "8905"; model_pct "99.2"; chr8 rmsk exon 43551325 43551849 2192 - . gene_id "HERVS71_8p11.1"; transcript_id "HERVS71_8p11.1"; locus "HERVS71_8p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0026"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 43551850 43560707 32303 - . gene_id "HERVS71_8p11.1"; transcript_id "HERVS71_8p11.1"; locus "HERVS71_8p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0026"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "4"; repStart "-69"; chr8 rmsk exon 43560710 43561237 2268 - . gene_id "HERVS71_8p11.1"; transcript_id "HERVS71_8p11.1"; locus "HERVS71_8p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0026"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK14C_8p11.1a ### chr8 rmsk gene 43694019 43697502 . - . gene_id "HERVK14C_8p11.1a"; transcript_id "HERVK14C_8p11.1a"; locus "HERVK14C_8p11.1a"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0014"; model_cov "2941"; model_pct "39.6"; chr8 rmsk exon 43694019 43694603 4379 - . gene_id "HERVK14C_8p11.1a"; transcript_id "HERVK14C_8p11.1a"; locus "HERVK14C_8p11.1a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0014"; repClass "LTR"; repEnd "585"; repFamily "ERVK"; repLeft "1"; repStart "-2"; chr8 rmsk exon 43694604 43697502 56191 - . gene_id "HERVK14C_8p11.1a"; transcript_id "HERVK14C_8p11.1a"; locus "HERVK14C_8p11.1a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0014"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "4493"; repStart "0"; ### HERVK14C_8p11.1b ### chr8 rmsk gene 43697571 43702581 . - . gene_id "HERVK14C_8p11.1b"; transcript_id "HERVK14C_8p11.1b"; locus "HERVK14C_8p11.1b"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0015"; model_cov "4491"; model_pct "60.4"; chr8 rmsk exon 43697571 43701995 56191 - . gene_id "HERVK14C_8p11.1b"; transcript_id "HERVK14C_8p11.1b"; locus "HERVK14C_8p11.1b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0015"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "2943"; repStart "0"; chr8 rmsk exon 43701996 43702581 4105 - . gene_id "HERVK14C_8p11.1b"; transcript_id "HERVK14C_8p11.1b"; locus "HERVK14C_8p11.1b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0015"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### HERVK14C_8p11.1c ### chr8 rmsk gene 43882490 43886791 . - . gene_id "HERVK14C_8p11.1c"; transcript_id "HERVK14C_8p11.1c"; locus "HERVK14C_8p11.1c"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0016"; model_cov "3749"; model_pct "50.4"; chr8 rmsk exon 43882490 43883071 3952 - . gene_id "HERVK14C_8p11.1c"; transcript_id "HERVK14C_8p11.1c"; locus "HERVK14C_8p11.1c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0016"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 43883072 43886791 27908 - . gene_id "HERVK14C_8p11.1c"; transcript_id "HERVK14C_8p11.1c"; locus "HERVK14C_8p11.1c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0016"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "3685"; repStart "0"; ### HERVK11_8p11.1 ### chr8 rmsk gene 43892563 43899365 . + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0053"; model_cov "4615"; model_pct "58.0"; chr8 rmsk exon 43892563 43893606 4963 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "1222"; repFamily "ERVK"; repLeft "-14"; repStart "1"; chr8 rmsk exon 43893625 43894492 3760 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "850"; repFamily "ERVK"; repLeft "-7103"; repStart "1"; chr8 rmsk exon 43894494 43895075 2983 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "1165"; chr8 rmsk exon 43895070 43896035 7370 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "3883"; repFamily "ERVK"; repLeft "-4070"; repStart "2914"; chr8 rmsk exon 43896011 43896150 906 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "4462"; chr8 rmsk exon 43896149 43897321 8305 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "5525"; chr8 rmsk exon 43897307 43898300 7624 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr8 rmsk exon 43898301 43899365 5061 + . gene_id "HERVK11_8p11.1"; transcript_id "HERVK11_8p11.1"; locus "HERVK11_8p11.1"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0053"; repClass "LTR"; repEnd "1234"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### HERV3_8q11.1 ### chr8 rmsk gene 46123757 46127238 . + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0036"; model_cov "2134"; model_pct "25.3"; chr8 rmsk exon 46123757 46123768 3173 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "16"; repFamily "ERV1"; repLeft "-543"; repStart "5"; chr8 rmsk exon 46123807 46124386 3173 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "-4"; repStart "17"; chr8 rmsk exon 46124404 46125347 1622 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "-7825"; repStart "-357"; chr8 rmsk exon 46125361 46125463 553 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "1424"; repFamily "ERV1"; repLeft "-7002"; repStart "1318"; chr8 rmsk exon 46125449 46125553 594 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "1813"; repFamily "ERV1"; repLeft "-6613"; repStart "1709"; chr8 rmsk exon 46125559 46126147 2682 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "1424"; repFamily "ERV1"; repLeft "-7002"; repStart "834"; chr8 rmsk exon 46126133 46126490 1947 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "2085"; repFamily "ERV1"; repLeft "-6341"; repStart "1709"; chr8 rmsk exon 46126905 46127238 920 + . gene_id "HERV3_8q11.1"; transcript_id "HERV3_8q11.1"; locus "HERV3_8q11.1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0036"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "149"; ### HML2_8q11.1a ### chr8 rmsk gene 46264028 46267723 . - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0073"; model_cov "2666"; model_pct "35.4"; chr8 rmsk exon 46264028 46265053 7799 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 46265056 46267136 11384 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "5462"; repStart "-2"; chr8 rmsk exon 46267142 46267723 3196 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "652"; repFamily "ERVK"; repLeft "58"; repStart "-6884"; ### HML2_8q11.1b ### chr8 rmsk gene 46267760 46272039 . - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0074"; model_cov "5442"; model_pct "72.2"; chr8 rmsk exon 46267760 46271002 15126 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "5476"; repFamily "ERVK"; repLeft "34"; repStart "-2060"; chr8 rmsk exon 46271034 46272039 7285 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_8q11.1a ### chr8 rmsk gene 46278044 46285064 . + . gene_id "HML3_8q11.1a"; transcript_id "HML3_8q11.1a"; locus "HML3_8q11.1a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0134"; model_cov "6017"; model_pct "99.9"; chr8 rmsk exon 46278044 46278550 3783 + . gene_id "HML3_8q11.1a"; transcript_id "HML3_8q11.1a"; locus "HML3_8q11.1a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0134"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 46278551 46284549 45058 + . gene_id "HML3_8q11.1a"; transcript_id "HML3_8q11.1a"; locus "HML3_8q11.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0134"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "-3"; repStart "1"; chr8 rmsk exon 46284555 46285064 3536 + . gene_id "HML3_8q11.1a"; transcript_id "HML3_8q11.1a"; locus "HML3_8q11.1a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0134"; repClass "LTR"; repEnd "508"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### HML6_8q11.1 ### chr8 rmsk gene 46483549 46491378 . - . gene_id "HML6_8q11.1"; transcript_id "HML6_8q11.1"; locus "HML6_8q11.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0047"; model_cov "7023"; model_pct "97.5"; chr8 rmsk exon 46483549 46483954 2217 - . gene_id "HML6_8q11.1"; transcript_id "HML6_8q11.1"; locus "HML6_8q11.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0047"; repClass "LTR"; repEnd "421"; repFamily "ERVK"; repLeft "13"; repStart "-63"; chr8 rmsk exon 46483971 46489658 32749 - . gene_id "HML6_8q11.1"; transcript_id "HML6_8q11.1"; locus "HML6_8q11.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0047"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "1441"; repStart "-2"; chr8 rmsk exon 46489653 46490915 7366 - . gene_id "HML6_8q11.1"; transcript_id "HML6_8q11.1"; locus "HML6_8q11.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0047"; repClass "LTR"; repEnd "1283"; repFamily "ERVK"; repLeft "19"; repStart "-5919"; chr8 rmsk exon 46490924 46491378 2264 - . gene_id "HML6_8q11.1"; transcript_id "HML6_8q11.1"; locus "HML6_8q11.1"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0047"; repClass "LTR"; repEnd "455"; repFamily "ERVK"; repLeft "1"; repStart "-29"; ### HERVK11_8q11.1 ### chr8 rmsk gene 46580301 46590041 . + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0054"; model_cov "6951"; model_pct "87.4"; chr8 rmsk exon 46580301 46581060 3479 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "825"; repFamily "ERVK"; repLeft "-246"; repStart "1"; chr8 rmsk exon 46581372 46581617 3479 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "1070"; repFamily "ERVK"; repLeft "-1"; repStart "826"; chr8 rmsk exon 46581618 46581937 2123 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "-7634"; repStart "1"; chr8 rmsk exon 46581935 46583135 30180 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "1398"; repFamily "ERVK"; repLeft "-6555"; repStart "206"; chr8 rmsk exon 46583437 46585580 30180 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "3589"; repFamily "ERVK"; repLeft "-4364"; repStart "1399"; chr8 rmsk exon 46585648 46586635 30180 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "3590"; chr8 rmsk exon 46586634 46587871 9488 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "6769"; repFamily "ERVK"; repLeft "-1184"; repStart "5525"; chr8 rmsk exon 46587853 46588840 7506 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr8 rmsk exon 46588841 46588983 910 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "174"; repFamily "ERVK"; repLeft "-1092"; repStart "31"; chr8 rmsk exon 46588985 46589491 2941 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "1021"; repFamily "ERVK"; repLeft "-245"; repStart "304"; chr8 rmsk exon 46589797 46590041 2941 + . gene_id "HERVK11_8q11.1"; transcript_id "HERVK11_8q11.1"; locus "HERVK11_8q11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0054"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1022"; ### HML5_8q11.1 ### chr8 rmsk gene 46651488 46656701 . + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0071"; model_cov "4272"; model_pct "62.5"; chr8 rmsk exon 46651488 46651968 3161 + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0071"; repClass "LTR"; repEnd "500"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr8 rmsk exon 46651971 46652837 5867 + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0071"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "-5932"; repStart "1"; chr8 rmsk exon 46652831 46654178 19668 + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0071"; repClass "LTR"; repEnd "3694"; repFamily "ERVK"; repLeft "-3143"; repStart "2325"; chr8 rmsk exon 46654473 46656226 19668 + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0071"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "-1758"; repStart "3080"; chr8 rmsk exon 46656227 46656701 3215 + . gene_id "HML5_8q11.1"; transcript_id "HML5_8q11.1"; locus "HML5_8q11.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0071"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER61_8q11.1 ### chr8 rmsk gene 46805567 46811035 . - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0225"; model_cov "4581"; model_pct "87.8"; chr8 rmsk exon 46805567 46805977 2035 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0225"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 46805978 46806329 2063 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4867"; repStart "0"; chr8 rmsk exon 46806364 46806381 2063 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "4866"; repFamily "ERV1"; repLeft "4849"; repStart "-351"; chr8 rmsk exon 46806369 46809574 14570 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "4636"; repFamily "ERV1"; repLeft "1361"; repStart "-581"; chr8 rmsk exon 46809570 46809834 1606 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "944"; repStart "-4004"; chr8 rmsk exon 46809835 46810386 2439 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "298"; repStart "-4377"; chr8 rmsk exon 46810483 46810609 559 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0225"; repClass "LTR"; repEnd "130"; repFamily "ERV1"; repLeft "2"; repStart "-5087"; chr8 rmsk exon 46810610 46811035 2347 - . gene_id "MER61_8q11.1"; transcript_id "MER61_8q11.1"; locus "MER61_8q11.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0225"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_8q11.1b ### chr8 rmsk gene 46876536 46881278 . + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0135"; model_cov "3749"; model_pct "62.3"; chr8 rmsk exon 46876536 46877049 4136 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 46877052 46877634 4242 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "602"; repFamily "ERVK"; repLeft "-5419"; repStart "3"; chr8 rmsk exon 46877637 46879149 12583 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1280"; chr8 rmsk exon 46879132 46879518 3058 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "4091"; repFamily "ERVK"; repLeft "-1930"; repStart "3711"; chr8 rmsk exon 46879517 46880765 9952 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4769"; chr8 rmsk exon 46880766 46881278 4060 + . gene_id "HML3_8q11.1b"; transcript_id "HML3_8q11.1b"; locus "HML3_8q11.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0135"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP3_8q11.1 ### chr8 rmsk gene 47005340 47015327 . - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0104"; model_cov "5492"; model_pct "61.6"; chr8 rmsk exon 47005340 47005589 1384 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "8912"; repFamily "ERV1"; repLeft "8659"; repStart "-7"; chr8 rmsk exon 47006749 47007464 4212 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "6999"; repFamily "ERV1"; repLeft "6270"; repStart "-1920"; chr8 rmsk exon 47007710 47008924 8087 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "4540"; repStart "-3102"; chr8 rmsk exon 47008919 47009083 8309 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "3127"; repStart "-5635"; chr8 rmsk exon 47009377 47010171 8309 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "3126"; repFamily "ERV1"; repLeft "2330"; repStart "-5793"; chr8 rmsk exon 47012426 47014265 8309 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "2329"; repFamily "ERV1"; repLeft "97"; repStart "-6590"; chr8 rmsk exon 47014585 47014647 2945 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "48"; repStart "-8823"; chr8 rmsk exon 47014678 47015327 3803 - . gene_id "HUERSP3_8q11.1"; transcript_id "HUERSP3_8q11.1"; locus "HUERSP3_8q11.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0104"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_8q11.1 ### chr8 rmsk gene 47074133 47075514 . - . gene_id "MER4B_8q11.1"; transcript_id "MER4B_8q11.1"; locus "MER4B_8q11.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0238"; model_cov "956"; model_pct "14.1"; chr8 rmsk exon 47074133 47074363 1184 - . gene_id "MER4B_8q11.1"; transcript_id "MER4B_8q11.1"; locus "MER4B_8q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0238"; repClass "LTR"; repEnd "2309"; repFamily "ERV1"; repLeft "1912"; repStart "-4449"; chr8 rmsk exon 47074655 47074989 1184 - . gene_id "MER4B_8q11.1"; transcript_id "MER4B_8q11.1"; locus "MER4B_8q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0238"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "232"; repStart "-6209"; chr8 rmsk exon 47075275 47075459 1184 - . gene_id "MER4B_8q11.1"; transcript_id "MER4B_8q11.1"; locus "MER4B_8q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0238"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "44"; repStart "-6527"; chr8 rmsk exon 47075459 47075514 356 - . gene_id "MER4B_8q11.1"; transcript_id "MER4B_8q11.1"; locus "MER4B_8q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0238"; repClass "LTR"; repEnd "1655"; repFamily "ERV1"; repLeft "1600"; repStart "-5103"; ### ERVLE_8q11.21a ### chr8 rmsk gene 47506952 47508682 . - . gene_id "ERVLE_8q11.21a"; transcript_id "ERVLE_8q11.21a"; locus "ERVLE_8q11.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2052"; model_cov "1086"; model_pct "19.2"; chr8 rmsk exon 47506952 47507146 369 - . gene_id "ERVLE_8q11.21a"; transcript_id "ERVLE_8q11.21a"; locus "ERVLE_8q11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2052"; repClass "LTR"; repEnd "4087"; repFamily "ERVL"; repLeft "3860"; repStart "-1580"; chr8 rmsk exon 47507543 47507836 331 - . gene_id "ERVLE_8q11.21a"; transcript_id "ERVLE_8q11.21a"; locus "ERVLE_8q11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2052"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "3222"; repStart "-2141"; chr8 rmsk exon 47508166 47508682 1077 - . gene_id "ERVLE_8q11.21a"; transcript_id "ERVLE_8q11.21a"; locus "ERVLE_8q11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2052"; repClass "LTR"; repEnd "2644"; repFamily "ERVL"; repLeft "2089"; repStart "-3023"; ### HERVFH21_8q11.21 ### chr8 rmsk gene 47988989 47999250 . - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0020"; model_cov "9490"; model_pct "100.0"; chr8 rmsk exon 47988989 47989462 3321 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr8 rmsk exon 47989469 47991237 7793 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "5955"; repFamily "ERV1"; repLeft "3422"; repStart "-574"; chr8 rmsk exon 47991745 47993486 25160 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "5320"; repFamily "ERV1"; repLeft "2062"; repStart "-1209"; chr8 rmsk exon 47994645 47994953 25160 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "3701"; repFamily "ERV1"; repLeft "3408"; repStart "-2828"; chr8 rmsk exon 47995254 47998768 25160 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "3407"; repFamily "ERV1"; repLeft "1"; repStart "-3122"; chr8 rmsk exon 47998769 47999250 3405 - . gene_id "HERVFH21_8q11.21"; transcript_id "HERVFH21_8q11.21"; locus "HERVFH21_8q11.21"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0020"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_8q11.21 ### chr8 rmsk gene 48225542 48232825 . + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0074"; model_cov "5832"; model_pct "78.6"; chr8 rmsk exon 48225542 48225649 710 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "-1388"; repFamily "ERV1"; repLeft "-8806"; repStart "-1497"; chr8 rmsk exon 48225650 48227968 11465 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "273"; chr8 rmsk exon 48228397 48228878 9572 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "3559"; repFamily "ERV1"; repLeft "-3859"; repStart "3072"; chr8 rmsk exon 48229044 48229650 9572 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "-3261"; repStart "3560"; chr8 rmsk exon 48229959 48230252 9572 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "4443"; repFamily "ERV1"; repLeft "-2975"; repStart "4158"; chr8 rmsk exon 48230556 48231752 13400 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "6075"; repFamily "ERV1"; repLeft "-1343"; repStart "4850"; chr8 rmsk exon 48232064 48232825 13400 + . gene_id "HUERSP3B_8q11.21"; transcript_id "HUERSP3B_8q11.21"; locus "HUERSP3B_8q11.21"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0074"; repClass "LTR"; repEnd "6836"; repFamily "ERV1"; repLeft "-582"; repStart "6076"; ### HERVW_8q11.21 ### chr8 rmsk gene 48235942 48239387 . - . gene_id "HERVW_8q11.21"; transcript_id "HERVW_8q11.21"; locus "HERVW_8q11.21"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0176"; model_cov "3157"; model_pct "36.6"; chr8 rmsk exon 48235942 48236267 2504 - . gene_id "HERVW_8q11.21"; transcript_id "HERVW_8q11.21"; locus "HERVW_8q11.21"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0176"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr8 rmsk exon 48236268 48236557 2356 - . gene_id "HERVW_8q11.21"; transcript_id "HERVW_8q11.21"; locus "HERVW_8q11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0176"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr8 rmsk exon 48236548 48236586 266 - . gene_id "HERVW_8q11.21"; transcript_id "HERVW_8q11.21"; locus "HERVW_8q11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0176"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr8 rmsk exon 48236580 48239387 23883 - . gene_id "HERVW_8q11.21"; transcript_id "HERVW_8q11.21"; locus "HERVW_8q11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0176"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "3191"; repStart "-2607"; ### HUERSP3_8q11.21 ### chr8 rmsk gene 48242754 48244436 . + . gene_id "HUERSP3_8q11.21"; transcript_id "HUERSP3_8q11.21"; locus "HUERSP3_8q11.21"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0105"; model_cov "1148"; model_pct "12.9"; chr8 rmsk exon 48242754 48242978 1483 + . gene_id "HUERSP3_8q11.21"; transcript_id "HUERSP3_8q11.21"; locus "HUERSP3_8q11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0105"; repClass "LTR"; repEnd "7084"; repFamily "ERV1"; repLeft "-1835"; repStart "6861"; chr8 rmsk exon 48242970 48243888 6360 + . gene_id "HUERSP3_8q11.21"; transcript_id "HUERSP3_8q11.21"; locus "HUERSP3_8q11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0105"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "7993"; chr8 rmsk exon 48243889 48244436 3023 + . gene_id "HUERSP3_8q11.21"; transcript_id "HUERSP3_8q11.21"; locus "HUERSP3_8q11.21"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0105"; repClass "LTR"; repEnd "578"; repFamily "ERV1"; repLeft "-34"; repStart "1"; ### HML3_8q11.21a ### chr8 rmsk gene 48244515 48250517 . - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0136"; model_cov "5156"; model_pct "85.6"; chr8 rmsk exon 48244515 48245027 4277 - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0136"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 48245028 48247174 10088 - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0136"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr8 rmsk exon 48247175 48249713 21500 - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0136"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "239"; repStart "-3223"; chr8 rmsk exon 48249706 48250005 2285 - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0136"; repClass "LTR"; repEnd "300"; repFamily "ERVK"; repLeft "1"; repStart "-5721"; chr8 rmsk exon 48250006 48250517 4299 - . gene_id "HML3_8q11.21a"; transcript_id "HML3_8q11.21a"; locus "HML3_8q11.21a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0136"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_8q11.21a ### chr8 rmsk gene 48528076 48529155 . + . gene_id "ERVLB4_8q11.21a"; transcript_id "ERVLB4_8q11.21a"; locus "ERVLB4_8q11.21a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0927"; model_cov "892"; model_pct "15.6"; chr8 rmsk exon 48528076 48528921 4251 + . gene_id "ERVLB4_8q11.21a"; transcript_id "ERVLB4_8q11.21a"; locus "ERVLB4_8q11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0927"; repClass "LTR"; repEnd "1878"; repFamily "ERVL"; repLeft "-3836"; repStart "986"; chr8 rmsk exon 48528923 48529155 872 + . gene_id "ERVLB4_8q11.21a"; transcript_id "ERVLB4_8q11.21a"; locus "ERVLB4_8q11.21a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0927"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-3"; repStart "328"; ### HML3_8q11.21b ### chr8 rmsk gene 48962289 48968004 . + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0137"; model_cov "4842"; model_pct "80.4"; chr8 rmsk exon 48962289 48962800 4222 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 48962801 48963202 17100 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "427"; repFamily "ERVK"; repLeft "-5594"; repStart "1"; chr8 rmsk exon 48963300 48963562 17100 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "706"; repFamily "ERVK"; repLeft "-5315"; repStart "428"; chr8 rmsk exon 48963620 48965580 17100 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "707"; chr8 rmsk exon 48965581 48966405 6669 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "4547"; repFamily "ERVK"; repLeft "-1474"; repStart "3723"; chr8 rmsk exon 48966403 48967488 6316 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "6017"; repFamily "ERVK"; repLeft "-4"; repStart "4794"; chr8 rmsk exon 48967492 48968004 4217 + . gene_id "HML3_8q11.21b"; transcript_id "HML3_8q11.21b"; locus "HML3_8q11.21b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0137"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVIP10F_8q11.21 ### chr8 rmsk gene 49094494 49104406 . + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0059"; model_cov "6802"; model_pct "87.9"; chr8 rmsk exon 49094494 49094574 255 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "-551"; repStart "1"; chr8 rmsk exon 49094596 49095041 2147 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "-21"; repStart "159"; chr8 rmsk exon 49095047 49096240 1835 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "-6785"; repStart "-45"; chr8 rmsk exon 49096393 49102174 20214 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "6874"; repFamily "ERV1"; repLeft "-863"; repStart "1169"; chr8 rmsk exon 49103583 49103687 17489 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "6975"; repFamily "ERV1"; repLeft "-762"; repStart "6875"; chr8 rmsk exon 49103859 49103939 241 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "-551"; repStart "1"; chr8 rmsk exon 49103962 49104406 1968 + . gene_id "HERVIP10F_8q11.21"; transcript_id "HERVIP10F_8q11.21"; locus "HERVIP10F_8q11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0059"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "-21"; repStart "160"; ### ERV316A3_8q11.21a ### chr8 rmsk gene 49160321 49162766 . - . gene_id "ERV316A3_8q11.21a"; transcript_id "ERV316A3_8q11.21a"; locus "ERV316A3_8q11.21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1535"; model_cov "1791"; model_pct "34.3"; chr8 rmsk exon 49160321 49160581 450 - . gene_id "ERV316A3_8q11.21a"; transcript_id "ERV316A3_8q11.21a"; locus "ERV316A3_8q11.21a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1535"; repClass "LTR"; repEnd "237"; repFamily "ERVL"; repLeft "7"; repStart "-219"; chr8 rmsk exon 49160993 49162319 1714 - . gene_id "ERV316A3_8q11.21a"; transcript_id "ERV316A3_8q11.21a"; locus "ERV316A3_8q11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1535"; repClass "LTR"; repEnd "3907"; repFamily "ERVL"; repLeft "2325"; repStart "-1319"; chr8 rmsk exon 49162576 49162766 432 - . gene_id "ERV316A3_8q11.21a"; transcript_id "ERV316A3_8q11.21a"; locus "ERV316A3_8q11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1535"; repClass "LTR"; repEnd "2399"; repFamily "ERVL"; repLeft "2190"; repStart "-2827"; ### ERVLB4_8q11.21b ### chr8 rmsk gene 49238145 49239905 . + . gene_id "ERVLB4_8q11.21b"; transcript_id "ERVLB4_8q11.21b"; locus "ERVLB4_8q11.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0928"; model_cov "1159"; model_pct "20.3"; chr8 rmsk exon 49238145 49238286 363 + . gene_id "ERVLB4_8q11.21b"; transcript_id "ERVLB4_8q11.21b"; locus "ERVLB4_8q11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0928"; repClass "LTR"; repEnd "4255"; repFamily "ERVL"; repLeft "-1459"; repStart "4105"; chr8 rmsk exon 49238441 49239055 1040 + . gene_id "ERVLB4_8q11.21b"; transcript_id "ERVLB4_8q11.21b"; locus "ERVLB4_8q11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0928"; repClass "LTR"; repEnd "4976"; repFamily "ERVL"; repLeft "-738"; repStart "4300"; chr8 rmsk exon 49239364 49239580 1040 + . gene_id "ERVLB4_8q11.21b"; transcript_id "ERVLB4_8q11.21b"; locus "ERVLB4_8q11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0928"; repClass "LTR"; repEnd "5184"; repFamily "ERVL"; repLeft "-530"; repStart "4977"; chr8 rmsk exon 49239787 49239905 1040 + . gene_id "ERVLB4_8q11.21b"; transcript_id "ERVLB4_8q11.21b"; locus "ERVLB4_8q11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0928"; repClass "LTR"; repEnd "5311"; repFamily "ERVL"; repLeft "-403"; repStart "5185"; ### HERVH_8q11.21 ### chr8 rmsk gene 49419793 49426326 . + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0695"; model_cov "6130"; model_pct "79.5"; chr8 rmsk exon 49419793 49420159 1976 + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0695"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 49420160 49424996 18508 + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0695"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr8 rmsk exon 49424988 49425414 2216 + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0695"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr8 rmsk exon 49425408 49425961 3404 + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0695"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr8 rmsk exon 49425962 49426326 2123 + . gene_id "HERVH_8q11.21"; transcript_id "HERVH_8q11.21"; locus "HERVH_8q11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0695"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_8q11.21a ### chr8 rmsk gene 49426632 49435851 . + . gene_id "HERV9_8q11.21a"; transcript_id "HERV9_8q11.21a"; locus "HERV9_8q11.21a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0103"; model_cov "8435"; model_pct "100.0"; chr8 rmsk exon 49426632 49427551 5410 + . gene_id "HERV9_8q11.21a"; transcript_id "HERV9_8q11.21a"; locus "HERV9_8q11.21a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0103"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "360"; chr8 rmsk exon 49427552 49435007 34513 + . gene_id "HERV9_8q11.21a"; transcript_id "HERV9_8q11.21a"; locus "HERV9_8q11.21a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0103"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 49435008 49435851 5206 + . gene_id "HERV9_8q11.21a"; transcript_id "HERV9_8q11.21a"; locus "HERV9_8q11.21a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0103"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "370"; ### ERVLE_8q11.21b ### chr8 rmsk gene 49483636 49486584 . + . gene_id "ERVLE_8q11.21b"; transcript_id "ERVLE_8q11.21b"; locus "ERVLE_8q11.21b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2055"; model_cov "2300"; model_pct "40.6"; chr8 rmsk exon 49483636 49484980 3936 + . gene_id "ERVLE_8q11.21b"; transcript_id "ERVLE_8q11.21b"; locus "ERVLE_8q11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2055"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "-1123"; repStart "3183"; chr8 rmsk exon 49485261 49486218 2240 + . gene_id "ERVLE_8q11.21b"; transcript_id "ERVLE_8q11.21b"; locus "ERVLE_8q11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2055"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4728"; chr8 rmsk exon 49486219 49486584 839 + . gene_id "ERVLE_8q11.21b"; transcript_id "ERVLE_8q11.21b"; locus "ERVLE_8q11.21b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2055"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-209"; repStart "1"; ### ERV316A3_8q11.21b ### chr8 rmsk gene 49593677 49599366 . + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1537"; model_cov "1685"; model_pct "32.2"; chr8 rmsk exon 49593677 49594076 1137 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-34"; repStart "7"; chr8 rmsk exon 49594357 49594441 608 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-4904"; repStart "243"; chr8 rmsk exon 49594742 49595053 608 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "650"; repFamily "ERVL"; repLeft "-4576"; repStart "323"; chr8 rmsk exon 49597546 49598182 1630 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "2985"; repFamily "ERVL"; repLeft "-2241"; repStart "2311"; chr8 rmsk exon 49598519 49599099 1425 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "3964"; repFamily "ERVL"; repLeft "-1262"; repStart "3359"; chr8 rmsk exon 49599253 49599366 311 + . gene_id "ERV316A3_8q11.21b"; transcript_id "ERV316A3_8q11.21b"; locus "ERV316A3_8q11.21b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1537"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "349"; ### ERVLB4_8q11.21c ### chr8 rmsk gene 49779479 49781804 . + . gene_id "ERVLB4_8q11.21c"; transcript_id "ERVLB4_8q11.21c"; locus "ERVLB4_8q11.21c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0929"; model_cov "1231"; model_pct "21.5"; chr8 rmsk exon 49779479 49779911 1219 + . gene_id "ERVLB4_8q11.21c"; transcript_id "ERVLB4_8q11.21c"; locus "ERVLB4_8q11.21c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0929"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "143"; chr8 rmsk exon 49779912 49780087 5831 + . gene_id "ERVLB4_8q11.21c"; transcript_id "ERVLB4_8q11.21c"; locus "ERVLB4_8q11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0929"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "-5539"; repStart "1"; chr8 rmsk exon 49780386 49780500 5831 + . gene_id "ERVLB4_8q11.21c"; transcript_id "ERVLB4_8q11.21c"; locus "ERVLB4_8q11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0929"; repClass "LTR"; repEnd "280"; repFamily "ERVL"; repLeft "-5434"; repStart "176"; chr8 rmsk exon 49780885 49781804 5831 + . gene_id "ERVLB4_8q11.21c"; transcript_id "ERVLB4_8q11.21c"; locus "ERVLB4_8q11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0929"; repClass "LTR"; repEnd "1234"; repFamily "ERVL"; repLeft "-4480"; repStart "281"; ### ERVLB4_8q11.21d ### chr8 rmsk gene 49785007 49790509 . + . gene_id "ERVLB4_8q11.21d"; transcript_id "ERVLB4_8q11.21d"; locus "ERVLB4_8q11.21d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0930"; model_cov "4165"; model_pct "72.9"; chr8 rmsk exon 49785007 49785942 4823 + . gene_id "ERVLB4_8q11.21d"; transcript_id "ERVLB4_8q11.21d"; locus "ERVLB4_8q11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0930"; repClass "LTR"; repEnd "2205"; repFamily "ERVL"; repLeft "-3509"; repStart "1227"; chr8 rmsk exon 49786361 49786773 2403 + . gene_id "ERVLB4_8q11.21d"; transcript_id "ERVLB4_8q11.21d"; locus "ERVLB4_8q11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0930"; repClass "LTR"; repEnd "2618"; repFamily "ERVL"; repLeft "-3096"; repStart "2203"; chr8 rmsk exon 49787828 49790509 13504 + . gene_id "ERVLB4_8q11.21d"; transcript_id "ERVLB4_8q11.21d"; locus "ERVLB4_8q11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0930"; repClass "LTR"; repEnd "5400"; repFamily "ERVL"; repLeft "-314"; repStart "2628"; ### ERVL_8q11.21a ### chr8 rmsk gene 49791269 49794652 . + . gene_id "ERVL_8q11.21a"; transcript_id "ERVL_8q11.21a"; locus "ERVL_8q11.21a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0246"; model_cov "648"; model_pct "11.3"; chr8 rmsk exon 49791269 49791527 1289 + . gene_id "ERVL_8q11.21a"; transcript_id "ERVL_8q11.21a"; locus "ERVL_8q11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0246"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "-2699"; repStart "2800"; chr8 rmsk exon 49791601 49791681 460 + . gene_id "ERVL_8q11.21a"; transcript_id "ERVL_8q11.21a"; locus "ERVL_8q11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0246"; repClass "LTR"; repEnd "3603"; repFamily "ERVL"; repLeft "-2154"; repStart "3521"; chr8 rmsk exon 49793920 49794216 1821 + . gene_id "ERVL_8q11.21a"; transcript_id "ERVL_8q11.21a"; locus "ERVL_8q11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0246"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5449"; chr8 rmsk exon 49794217 49794652 1458 + . gene_id "ERVL_8q11.21a"; transcript_id "ERVL_8q11.21a"; locus "ERVL_8q11.21a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0246"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-40"; repStart "2"; ### ERVLB4_8q11.21e ### chr8 rmsk gene 50187644 50189176 . - . gene_id "ERVLB4_8q11.21e"; transcript_id "ERVLB4_8q11.21e"; locus "ERVLB4_8q11.21e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0931"; model_cov "1680"; model_pct "29.4"; chr8 rmsk exon 50187644 50189176 3260 - . gene_id "ERVLB4_8q11.21e"; transcript_id "ERVLB4_8q11.21e"; locus "ERVLB4_8q11.21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0931"; repClass "LTR"; repEnd "4533"; repFamily "ERVL"; repLeft "2853"; repStart "-1181"; ### ERVL_8q11.21b ### chr8 rmsk gene 50369847 50371048 . + . gene_id "ERVL_8q11.21b"; transcript_id "ERVL_8q11.21b"; locus "ERVL_8q11.21b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0247"; model_cov "1217"; model_pct "21.1"; chr8 rmsk exon 50369847 50371048 4582 + . gene_id "ERVL_8q11.21b"; transcript_id "ERVL_8q11.21b"; locus "ERVL_8q11.21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0247"; repClass "LTR"; repEnd "1239"; repFamily "ERVL"; repLeft "-4518"; repStart "22"; ### ERVLB4_8q11.21f ### chr8 rmsk gene 50382735 50388876 . - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0933"; model_cov "5222"; model_pct "91.4"; chr8 rmsk exon 50382735 50383144 1968 - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0933"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 50383148 50384651 7588 - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0933"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "4157"; repStart "-4"; chr8 rmsk exon 50384647 50386508 9603 - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0933"; repClass "LTR"; repEnd "3673"; repFamily "ERVL"; repLeft "1788"; repStart "-2041"; chr8 rmsk exon 50386904 50388545 4017 - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0933"; repClass "LTR"; repEnd "1785"; repFamily "ERVL"; repLeft "1"; repStart "-3929"; chr8 rmsk exon 50388590 50388876 1282 - . gene_id "ERVLB4_8q11.21f"; transcript_id "ERVLB4_8q11.21f"; locus "ERVLB4_8q11.21f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0933"; repClass "LTR"; repEnd "325"; repFamily "ERVL"; repLeft "27"; repStart "-72"; ### HERVL40_8q11.21 ### chr8 rmsk gene 50632841 50634365 . + . gene_id "HERVL40_8q11.21"; transcript_id "HERVL40_8q11.21"; locus "HERVL40_8q11.21"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0236"; model_cov "873"; model_pct "15.8"; chr8 rmsk exon 50632841 50632971 575 + . gene_id "HERVL40_8q11.21"; transcript_id "HERVL40_8q11.21"; locus "HERVL40_8q11.21"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0236"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-12"; repStart "369"; chr8 rmsk exon 50632996 50633509 1006 + . gene_id "HERVL40_8q11.21"; transcript_id "HERVL40_8q11.21"; locus "HERVL40_8q11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0236"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-5010"; repStart "17"; chr8 rmsk exon 50633998 50634365 1376 + . gene_id "HERVL40_8q11.21"; transcript_id "HERVL40_8q11.21"; locus "HERVL40_8q11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0236"; repClass "LTR"; repEnd "3371"; repFamily "ERVL"; repLeft "-2159"; repStart "3001"; ### ERV316A3_8q11.21c ### chr8 rmsk gene 50727886 50729870 . - . gene_id "ERV316A3_8q11.21c"; transcript_id "ERV316A3_8q11.21c"; locus "ERV316A3_8q11.21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1539"; model_cov "1165"; model_pct "22.3"; chr8 rmsk exon 50727886 50727997 320 - . gene_id "ERV316A3_8q11.21c"; transcript_id "ERV316A3_8q11.21c"; locus "ERV316A3_8q11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1539"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "4676"; repStart "-436"; chr8 rmsk exon 50728403 50728687 699 - . gene_id "ERV316A3_8q11.21c"; transcript_id "ERV316A3_8q11.21c"; locus "ERV316A3_8q11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1539"; repClass "LTR"; repEnd "4233"; repFamily "ERVL"; repLeft "3939"; repStart "-993"; chr8 rmsk exon 50728773 50729510 666 - . gene_id "ERV316A3_8q11.21c"; transcript_id "ERV316A3_8q11.21c"; locus "ERV316A3_8q11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1539"; repClass "LTR"; repEnd "3723"; repFamily "ERVL"; repLeft "2966"; repStart "-1503"; chr8 rmsk exon 50729678 50729870 349 - . gene_id "ERV316A3_8q11.21c"; transcript_id "ERV316A3_8q11.21c"; locus "ERV316A3_8q11.21c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1539"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "194"; repStart "-56"; ### MER61_8q11.21 ### chr8 rmsk gene 50804221 50809479 . + . gene_id "MER61_8q11.21"; transcript_id "MER61_8q11.21"; locus "MER61_8q11.21"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0226"; model_cov "5216"; model_pct "100.0"; chr8 rmsk exon 50804221 50804563 2104 + . gene_id "MER61_8q11.21"; transcript_id "MER61_8q11.21"; locus "MER61_8q11.21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0226"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 50804564 50809134 24758 + . gene_id "MER61_8q11.21"; transcript_id "MER61_8q11.21"; locus "MER61_8q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0226"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 50809135 50809479 2166 + . gene_id "MER61_8q11.21"; transcript_id "MER61_8q11.21"; locus "MER61_8q11.21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0226"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8q11.21c ### chr8 rmsk gene 50913154 50915120 . + . gene_id "ERVLE_8q11.21c"; transcript_id "ERVLE_8q11.21c"; locus "ERVLE_8q11.21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2058"; model_cov "1810"; model_pct "31.9"; chr8 rmsk exon 50913154 50913621 1314 + . gene_id "ERVLE_8q11.21c"; transcript_id "ERVLE_8q11.21c"; locus "ERVLE_8q11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2058"; repClass "LTR"; repEnd "1788"; repFamily "ERVL"; repLeft "-3879"; repStart "1310"; chr8 rmsk exon 50913802 50914942 3125 + . gene_id "ERVLE_8q11.21c"; transcript_id "ERVLE_8q11.21c"; locus "ERVLE_8q11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2058"; repClass "LTR"; repEnd "3007"; repFamily "ERVL"; repLeft "-2660"; repStart "1809"; chr8 rmsk exon 50914986 50915120 491 + . gene_id "ERVLE_8q11.21c"; transcript_id "ERVLE_8q11.21c"; locus "ERVLE_8q11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2058"; repClass "LTR"; repEnd "3226"; repFamily "ERVL"; repLeft "-2441"; repStart "3092"; ### ERV316A3_8q11.21d ### chr8 rmsk gene 50949175 50950867 . + . gene_id "ERV316A3_8q11.21d"; transcript_id "ERV316A3_8q11.21d"; locus "ERV316A3_8q11.21d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1540"; model_cov "1806"; model_pct "34.6"; chr8 rmsk exon 50949175 50949417 437 + . gene_id "ERV316A3_8q11.21d"; transcript_id "ERV316A3_8q11.21d"; locus "ERV316A3_8q11.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1540"; repClass "LTR"; repEnd "1379"; repFamily "ERVL"; repLeft "-3847"; repStart "1107"; chr8 rmsk exon 50949449 50950867 1514 + . gene_id "ERV316A3_8q11.21d"; transcript_id "ERV316A3_8q11.21d"; locus "ERV316A3_8q11.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1540"; repClass "LTR"; repEnd "2720"; repFamily "ERVL"; repLeft "-2506"; repStart "1186"; ### ERVLE_8q11.21d ### chr8 rmsk gene 50970873 50971427 . + . gene_id "ERVLE_8q11.21d"; transcript_id "ERVLE_8q11.21d"; locus "ERVLE_8q11.21d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2059"; model_cov "585"; model_pct "10.3"; chr8 rmsk exon 50970873 50971427 934 + . gene_id "ERVLE_8q11.21d"; transcript_id "ERVLE_8q11.21d"; locus "ERVLE_8q11.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2059"; repClass "LTR"; repEnd "3988"; repFamily "ERVL"; repLeft "-1679"; repStart "3403"; ### ERVLE_8q11.21e ### chr8 rmsk gene 51111375 51112429 . + . gene_id "ERVLE_8q11.21e"; transcript_id "ERVLE_8q11.21e"; locus "ERVLE_8q11.21e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2060"; model_cov "999"; model_pct "17.6"; chr8 rmsk exon 51111375 51112116 1446 + . gene_id "ERVLE_8q11.21e"; transcript_id "ERVLE_8q11.21e"; locus "ERVLE_8q11.21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2060"; repClass "LTR"; repEnd "4640"; repFamily "ERVL"; repLeft "-1027"; repStart "3903"; chr8 rmsk exon 51112164 51112429 1031 + . gene_id "ERVLE_8q11.21e"; transcript_id "ERVLE_8q11.21e"; locus "ERVLE_8q11.21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2060"; repClass "LTR"; repEnd "5333"; repFamily "ERVL"; repLeft "-334"; repStart "5071"; ### ERVLE_8q11.21f ### chr8 rmsk gene 51139221 51141556 . - . gene_id "ERVLE_8q11.21f"; transcript_id "ERVLE_8q11.21f"; locus "ERVLE_8q11.21f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2061"; model_cov "1834"; model_pct "32.4"; chr8 rmsk exon 51139221 51139589 493 - . gene_id "ERVLE_8q11.21f"; transcript_id "ERVLE_8q11.21f"; locus "ERVLE_8q11.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2061"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "4595"; repStart "-702"; chr8 rmsk exon 51140158 51141556 1936 - . gene_id "ERVLE_8q11.21f"; transcript_id "ERVLE_8q11.21f"; locus "ERVLE_8q11.21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2061"; repClass "LTR"; repEnd "4453"; repFamily "ERVL"; repLeft "2989"; repStart "-1214"; ### HERVL_8q11.21 ### chr8 rmsk gene 51267511 51269038 . - . gene_id "HERVL_8q11.21"; transcript_id "HERVL_8q11.21"; locus "HERVL_8q11.21"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0748"; model_cov "991"; model_pct "17.5"; chr8 rmsk exon 51267511 51268053 1954 - . gene_id "HERVL_8q11.21"; transcript_id "HERVL_8q11.21"; locus "HERVL_8q11.21"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0748"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr8 rmsk exon 51268054 51269038 7101 - . gene_id "HERVL_8q11.21"; transcript_id "HERVL_8q11.21"; locus "HERVL_8q11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0748"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4663"; repStart "0"; ### HERV9_8q11.21b ### chr8 rmsk gene 51288755 51299578 . - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0104"; model_cov "8166"; model_pct "96.8"; chr8 rmsk exon 51288755 51289080 3649 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "195"; repStart "0"; chr8 rmsk exon 51289365 51289531 3649 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "2"; repStart "-325"; chr8 rmsk exon 51289532 51289667 996 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "8300"; repStart "0"; chr8 rmsk exon 51290649 51297828 50688 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "8060"; repFamily "ERV1"; repLeft "1028"; repStart "-376"; chr8 rmsk exon 51298129 51298996 50688 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "1027"; repFamily "ERV1"; repLeft "29"; repStart "-7409"; chr8 rmsk exon 51299017 51299578 3931 - . gene_id "HERV9_8q11.21b"; transcript_id "HERV9_8q11.21b"; locus "HERV9_8q11.21b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0104"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_8q11.23a ### chr8 rmsk gene 52001007 52001684 . - . gene_id "ERVLE_8q11.23a"; transcript_id "ERVLE_8q11.23a"; locus "ERVLE_8q11.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2062"; model_cov "607"; model_pct "10.7"; chr8 rmsk exon 52001007 52001273 524 - . gene_id "ERVLE_8q11.23a"; transcript_id "ERVLE_8q11.23a"; locus "ERVLE_8q11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2062"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "4989"; repStart "-425"; chr8 rmsk exon 52001338 52001517 667 - . gene_id "ERVLE_8q11.23a"; transcript_id "ERVLE_8q11.23a"; locus "ERVLE_8q11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2062"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "4722"; repStart "-763"; chr8 rmsk exon 52001513 52001684 669 - . gene_id "ERVLE_8q11.23a"; transcript_id "ERVLE_8q11.23a"; locus "ERVLE_8q11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2062"; repClass "LTR"; repEnd "2211"; repFamily "ERVL"; repLeft "2039"; repStart "-3456"; ### ERV316A3_8q11.23a ### chr8 rmsk gene 52189105 52193580 . + . gene_id "ERV316A3_8q11.23a"; transcript_id "ERV316A3_8q11.23a"; locus "ERV316A3_8q11.23a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1542"; model_cov "3956"; model_pct "75.7"; chr8 rmsk exon 52189105 52189491 443 + . gene_id "ERV316A3_8q11.23a"; transcript_id "ERV316A3_8q11.23a"; locus "ERV316A3_8q11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1542"; repClass "LTR"; repEnd "1440"; repFamily "ERVL"; repLeft "-3786"; repStart "945"; chr8 rmsk exon 52189488 52190018 6320 + . gene_id "ERV316A3_8q11.23a"; transcript_id "ERV316A3_8q11.23a"; locus "ERV316A3_8q11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1542"; repClass "LTR"; repEnd "2152"; repFamily "ERVL"; repLeft "-3074"; repStart "1595"; chr8 rmsk exon 52190360 52193203 6320 + . gene_id "ERV316A3_8q11.23a"; transcript_id "ERV316A3_8q11.23a"; locus "ERV316A3_8q11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1542"; repClass "LTR"; repEnd "5057"; repFamily "ERVL"; repLeft "-169"; repStart "2153"; chr8 rmsk exon 52193258 52193580 427 + . gene_id "ERV316A3_8q11.23a"; transcript_id "ERV316A3_8q11.23a"; locus "ERV316A3_8q11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1542"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-68"; repStart "5"; ### ERV316A3_8q11.23b ### chr8 rmsk gene 52312420 52314222 . + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1543"; model_cov "797"; model_pct "15.3"; chr8 rmsk exon 52312420 52312573 488 + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1543"; repClass "LTR"; repEnd "1983"; repFamily "ERVL"; repLeft "-3243"; repStart "1702"; chr8 rmsk exon 52312574 52312684 477 + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1543"; repClass "LTR"; repEnd "2427"; repFamily "ERVL"; repLeft "-2799"; repStart "2310"; chr8 rmsk exon 52312782 52312924 537 + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1543"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2142"; repStart "2938"; chr8 rmsk exon 52313553 52313782 642 + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1543"; repClass "LTR"; repEnd "5038"; repFamily "ERVL"; repLeft "-188"; repStart "4785"; chr8 rmsk exon 52313948 52314222 496 + . gene_id "ERV316A3_8q11.23b"; transcript_id "ERV316A3_8q11.23b"; locus "ERV316A3_8q11.23b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1543"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "-40"; repStart "42"; ### HERVL_8q11.23a ### chr8 rmsk gene 52527895 52531297 . + . gene_id "HERVL_8q11.23a"; transcript_id "HERVL_8q11.23a"; locus "HERVL_8q11.23a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0749"; model_cov "2884"; model_pct "51.0"; chr8 rmsk exon 52527895 52528371 3538 + . gene_id "HERVL_8q11.23a"; transcript_id "HERVL_8q11.23a"; locus "HERVL_8q11.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0749"; repClass "LTR"; repEnd "3111"; repFamily "ERVL"; repLeft "-2543"; repStart "2638"; chr8 rmsk exon 52528371 52530770 18094 + . gene_id "HERVL_8q11.23a"; transcript_id "HERVL_8q11.23a"; locus "HERVL_8q11.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0749"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3243"; chr8 rmsk exon 52530771 52531170 2737 + . gene_id "HERVL_8q11.23a"; transcript_id "HERVL_8q11.23a"; locus "HERVL_8q11.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0749"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr8 rmsk exon 52531260 52531297 239 + . gene_id "HERVL_8q11.23a"; transcript_id "HERVL_8q11.23a"; locus "HERVL_8q11.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0749"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "404"; ### HERVL_8q11.23b ### chr8 rmsk gene 52568065 52571470 . - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0750"; model_cov "2672"; model_pct "47.3"; chr8 rmsk exon 52568065 52568145 305 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "360"; repStart "0"; chr8 rmsk exon 52568177 52568377 1392 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "199"; repStart "-44"; chr8 rmsk exon 52568377 52568417 346 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "32"; repFamily "ERVL"; repLeft "-8"; repStart "-412"; chr8 rmsk exon 52568419 52571121 20923 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "2673"; repFamily "ERVL"; repLeft "1"; repStart "-2981"; chr8 rmsk exon 52571122 52571161 1841 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "406"; repStart "0"; chr8 rmsk exon 52571232 52571470 1841 - . gene_id "HERVL_8q11.23b"; transcript_id "HERVL_8q11.23b"; locus "HERVL_8q11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0750"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "157"; repStart "-39"; ### MER41_8q11.23a ### chr8 rmsk gene 52599733 52604827 . + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0291"; model_cov "6356"; model_pct "100.0"; chr8 rmsk exon 52599733 52599941 910 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "1183"; repFamily "ERV1"; repLeft "-4763"; repStart "972"; chr8 rmsk exon 52599948 52600009 302 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "-389"; repFamily "ERV1"; repLeft "-6335"; repStart "-448"; chr8 rmsk exon 52600138 52600380 1059 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "4864"; repFamily "ERV1"; repLeft "-1082"; repStart "4720"; chr8 rmsk exon 52600371 52600533 735 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "-762"; repStart "5027"; chr8 rmsk exon 52600554 52601109 2309 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "5556"; repFamily "ERV1"; repLeft "-390"; repStart "5168"; chr8 rmsk exon 52601107 52602680 12419 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "3928"; repFamily "ERV1"; repLeft "-2018"; repStart "1886"; chr8 rmsk exon 52602706 52604827 12419 + . gene_id "MER41_8q11.23a"; transcript_id "MER41_8q11.23a"; locus "MER41_8q11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0291"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "2590"; ### ERVLE_8q11.23b ### chr8 rmsk gene 52650632 52654006 . + . gene_id "ERVLE_8q11.23b"; transcript_id "ERVLE_8q11.23b"; locus "ERVLE_8q11.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2064"; model_cov "771"; model_pct "13.6"; chr8 rmsk exon 52650632 52650820 401 + . gene_id "ERVLE_8q11.23b"; transcript_id "ERVLE_8q11.23b"; locus "ERVLE_8q11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2064"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "-5451"; repStart "15"; chr8 rmsk exon 52653164 52653541 869 + . gene_id "ERVLE_8q11.23b"; transcript_id "ERVLE_8q11.23b"; locus "ERVLE_8q11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2064"; repClass "LTR"; repEnd "1661"; repFamily "ERVL"; repLeft "-4006"; repStart "1236"; chr8 rmsk exon 52653870 52654006 596 + . gene_id "ERVLE_8q11.23b"; transcript_id "ERVLE_8q11.23b"; locus "ERVLE_8q11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2064"; repClass "LTR"; repEnd "2173"; repFamily "ERVL"; repLeft "-3494"; repStart "2028"; ### LTR57_8q11.23 ### chr8 rmsk gene 52760049 52766332 . + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0096"; model_cov "4585"; model_pct "85.8"; chr8 rmsk exon 52760049 52760445 2345 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 52760453 52761264 18725 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "804"; repFamily "ERVL"; repLeft "-4539"; repStart "8"; chr8 rmsk exon 52761555 52761905 18725 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "-4201"; repStart "805"; chr8 rmsk exon 52762211 52764266 18725 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "3236"; repFamily "ERVL"; repLeft "-2107"; repStart "1143"; chr8 rmsk exon 52764249 52765331 8324 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "-293"; repStart "3983"; chr8 rmsk exon 52765629 52765932 8324 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "5051"; chr8 rmsk exon 52765933 52766332 2556 + . gene_id "LTR57_8q11.23"; transcript_id "LTR57_8q11.23"; locus "LTR57_8q11.23"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0096"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_8q11.23c ### chr8 rmsk gene 52835420 52836954 . + . gene_id "ERV316A3_8q11.23c"; transcript_id "ERV316A3_8q11.23c"; locus "ERV316A3_8q11.23c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1544"; model_cov "1166"; model_pct "22.3"; chr8 rmsk exon 52835420 52835753 761 + . gene_id "ERV316A3_8q11.23c"; transcript_id "ERV316A3_8q11.23c"; locus "ERV316A3_8q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1544"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-3913"; repStart "946"; chr8 rmsk exon 52836286 52836954 1381 + . gene_id "ERV316A3_8q11.23c"; transcript_id "ERV316A3_8q11.23c"; locus "ERV316A3_8q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1544"; repClass "LTR"; repEnd "2101"; repFamily "ERVL"; repLeft "-3125"; repStart "1302"; ### MER41_8q11.23b ### chr8 rmsk gene 52881004 52881746 . - . gene_id "MER41_8q11.23b"; transcript_id "MER41_8q11.23b"; locus "MER41_8q11.23b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0292"; model_cov "594"; model_pct "10.0"; chr8 rmsk exon 52881004 52881398 765 - . gene_id "MER41_8q11.23b"; transcript_id "MER41_8q11.23b"; locus "MER41_8q11.23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0292"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "260"; repStart "-5242"; chr8 rmsk exon 52881595 52881746 272 - . gene_id "MER41_8q11.23b"; transcript_id "MER41_8q11.23b"; locus "MER41_8q11.23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0292"; repClass "LTR"; repEnd "-142"; repFamily "ERV1"; repLeft "-292"; repStart "-6088"; ### HML3_8q11.23a ### chr8 rmsk gene 52979863 52984068 . - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0138"; model_cov "3251"; model_pct "54.0"; chr8 rmsk exon 52979863 52980351 3664 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 52980352 52980445 721 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5929"; repStart "0"; chr8 rmsk exon 52980446 52981957 12582 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "5134"; repFamily "ERVK"; repLeft "3613"; repStart "-887"; chr8 rmsk exon 52981955 52983004 8488 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "2495"; repFamily "ERVK"; repLeft "1436"; repStart "-3526"; chr8 rmsk exon 52983003 52983577 4152 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr8 rmsk exon 52983578 52984068 3599 - . gene_id "HML3_8q11.23a"; transcript_id "HML3_8q11.23a"; locus "HML3_8q11.23a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0138"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL40_8q11.23a ### chr8 rmsk gene 53099857 53101822 . - . gene_id "HERVL40_8q11.23a"; transcript_id "HERVL40_8q11.23a"; locus "HERVL40_8q11.23a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0237"; model_cov "853"; model_pct "15.4"; chr8 rmsk exon 53099857 53100157 681 - . gene_id "HERVL40_8q11.23a"; transcript_id "HERVL40_8q11.23a"; locus "HERVL40_8q11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0237"; repClass "LTR"; repEnd "4288"; repFamily "ERVL"; repLeft "3983"; repStart "-1242"; chr8 rmsk exon 53100979 53101034 266 - . gene_id "HERVL40_8q11.23a"; transcript_id "HERVL40_8q11.23a"; locus "HERVL40_8q11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0237"; repClass "LTR"; repEnd "3564"; repFamily "ERVL"; repLeft "3507"; repStart "-1966"; chr8 rmsk exon 53101325 53101822 1007 - . gene_id "HERVL40_8q11.23a"; transcript_id "HERVL40_8q11.23a"; locus "HERVL40_8q11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0237"; repClass "LTR"; repEnd "3060"; repFamily "ERVL"; repLeft "2569"; repStart "-2470"; ### HERV9_8q11.23a ### chr8 rmsk gene 53136318 53143640 . - . gene_id "HERV9_8q11.23a"; transcript_id "HERV9_8q11.23a"; locus "HERV9_8q11.23a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0105"; model_cov "5161"; model_pct "61.2"; chr8 rmsk exon 53136318 53136905 3344 - . gene_id "HERV9_8q11.23a"; transcript_id "HERV9_8q11.23a"; locus "HERV9_8q11.23a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0105"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "4"; repStart "-234"; chr8 rmsk exon 53138001 53143058 31991 - . gene_id "HERV9_8q11.23a"; transcript_id "HERV9_8q11.23a"; locus "HERV9_8q11.23a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0105"; repClass "LTR"; repEnd "5164"; repFamily "ERV1"; repLeft "3"; repStart "-3272"; chr8 rmsk exon 53143059 53143640 3330 - . gene_id "HERV9_8q11.23a"; transcript_id "HERV9_8q11.23a"; locus "HERV9_8q11.23a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0105"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "1"; repStart "-231"; ### MER61_8q11.23a ### chr8 rmsk gene 53344424 53348184 . + . gene_id "MER61_8q11.23a"; transcript_id "MER61_8q11.23a"; locus "MER61_8q11.23a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0227"; model_cov "3498"; model_pct "67.1"; chr8 rmsk exon 53344424 53347856 20764 + . gene_id "MER61_8q11.23a"; transcript_id "MER61_8q11.23a"; locus "MER61_8q11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0227"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1719"; chr8 rmsk exon 53347858 53348184 1768 + . gene_id "MER61_8q11.23a"; transcript_id "MER61_8q11.23a"; locus "MER61_8q11.23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0227"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### PABLA_8q11.23 ### chr8 rmsk gene 53348448 53352761 . - . gene_id "PABLA_8q11.23"; transcript_id "PABLA_8q11.23"; locus "PABLA_8q11.23"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0084"; model_cov "5011"; model_pct "99.9"; chr8 rmsk exon 53348448 53352761 18691 - . gene_id "PABLA_8q11.23"; transcript_id "PABLA_8q11.23"; locus "PABLA_8q11.23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0084"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### HARLEQUIN_8q11.23a ### chr8 rmsk gene 53367143 53369009 . - . gene_id "HARLEQUIN_8q11.23a"; transcript_id "HARLEQUIN_8q11.23a"; locus "HARLEQUIN_8q11.23a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0109"; model_cov "2351"; model_pct "34.1"; chr8 rmsk exon 53367143 53367639 2418 - . gene_id "HARLEQUIN_8q11.23a"; transcript_id "HARLEQUIN_8q11.23a"; locus "HARLEQUIN_8q11.23a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0109"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-19"; repStart "0"; chr8 rmsk exon 53367640 53367760 693 - . gene_id "HARLEQUIN_8q11.23a"; transcript_id "HARLEQUIN_8q11.23a"; locus "HARLEQUIN_8q11.23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0109"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6779"; repStart "0"; chr8 rmsk exon 53367755 53368994 8027 - . gene_id "HARLEQUIN_8q11.23a"; transcript_id "HARLEQUIN_8q11.23a"; locus "HARLEQUIN_8q11.23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0109"; repClass "LTR"; repEnd "5709"; repFamily "ERV1"; repLeft "3508"; repStart "-1187"; chr8 rmsk exon 53368976 53369009 275 - . gene_id "HARLEQUIN_8q11.23a"; transcript_id "HARLEQUIN_8q11.23a"; locus "HARLEQUIN_8q11.23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0109"; repClass "LTR"; repEnd "2723"; repFamily "ERV1"; repLeft "2690"; repStart "-4173"; ### HARLEQUIN_8q11.23b ### chr8 rmsk gene 53375154 53379815 . - . gene_id "HARLEQUIN_8q11.23b"; transcript_id "HARLEQUIN_8q11.23b"; locus "HARLEQUIN_8q11.23b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0110"; model_cov "4743"; model_pct "68.8"; chr8 rmsk exon 53375154 53379316 20103 - . gene_id "HARLEQUIN_8q11.23b"; transcript_id "HARLEQUIN_8q11.23b"; locus "HARLEQUIN_8q11.23b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0110"; repClass "LTR"; repEnd "6266"; repFamily "ERV1"; repLeft "1523"; repStart "-630"; chr8 rmsk exon 53379317 53379815 2474 - . gene_id "HARLEQUIN_8q11.23b"; transcript_id "HARLEQUIN_8q11.23b"; locus "HARLEQUIN_8q11.23b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0110"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-19"; repStart "0"; ### MER61_8q11.23b ### chr8 rmsk gene 53412292 53414645 . - . gene_id "MER61_8q11.23b"; transcript_id "MER61_8q11.23b"; locus "MER61_8q11.23b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0228"; model_cov "1625"; model_pct "31.1"; chr8 rmsk exon 53412292 53413070 5027 - . gene_id "MER61_8q11.23b"; transcript_id "MER61_8q11.23b"; locus "MER61_8q11.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0228"; repClass "LTR"; repEnd "1732"; repFamily "ERV1"; repLeft "960"; repStart "-3485"; chr8 rmsk exon 53413057 53413554 3863 - . gene_id "MER61_8q11.23b"; transcript_id "MER61_8q11.23b"; locus "MER61_8q11.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0228"; repClass "LTR"; repEnd "855"; repFamily "ERV1"; repLeft "406"; repStart "-4362"; chr8 rmsk exon 53413847 53414229 3863 - . gene_id "MER61_8q11.23b"; transcript_id "MER61_8q11.23b"; locus "MER61_8q11.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0228"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "1"; repStart "-4812"; chr8 rmsk exon 53414230 53414645 2987 - . gene_id "MER61_8q11.23b"; transcript_id "MER61_8q11.23b"; locus "MER61_8q11.23b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0228"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_8q11.23b ### chr8 rmsk gene 53459343 53469199 . + . gene_id "HERV9_8q11.23b"; transcript_id "HERV9_8q11.23b"; locus "HERV9_8q11.23b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0106"; model_cov "8435"; model_pct "100.0"; chr8 rmsk exon 53459343 53460056 5550 + . gene_id "HERV9_8q11.23b"; transcript_id "HERV9_8q11.23b"; locus "HERV9_8q11.23b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0106"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr8 rmsk exon 53460057 53468446 70510 + . gene_id "HERV9_8q11.23b"; transcript_id "HERV9_8q11.23b"; locus "HERV9_8q11.23b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0106"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 53468447 53469199 6103 + . gene_id "HERV9_8q11.23b"; transcript_id "HERV9_8q11.23b"; locus "HERV9_8q11.23b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0106"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_8q11.23 ### chr8 rmsk gene 53482820 53488834 . + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0090"; model_cov "4964"; model_pct "82.1"; chr8 rmsk exon 53482820 53483346 2053 + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0090"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr8 rmsk exon 53483381 53485723 10568 + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0090"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2"; chr8 rmsk exon 53485721 53486504 3234 + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0090"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2718"; chr8 rmsk exon 53486507 53488143 10806 + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0090"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4394"; chr8 rmsk exon 53488299 53488834 2021 + . gene_id "HERVL18_8q11.23"; transcript_id "HERVL18_8q11.23"; locus "HERVL18_8q11.23"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0090"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-27"; repStart "1"; ### HERV3_8q11.23 ### chr8 rmsk gene 53520479 53524714 . - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0037"; model_cov "3570"; model_pct "42.4"; chr8 rmsk exon 53520479 53520755 1449 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "7380"; repFamily "ERV1"; repLeft "7113"; repStart "-1046"; chr8 rmsk exon 53520793 53520904 1449 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "7112"; repFamily "ERV1"; repLeft "7012"; repStart "-1314"; chr8 rmsk exon 53520962 53522110 6581 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "5148"; repStart "-2113"; chr8 rmsk exon 53522101 53522219 620 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3706"; repStart "-4602"; chr8 rmsk exon 53522217 53522591 1642 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "2069"; repStart "-5950"; chr8 rmsk exon 53522876 53523216 1824 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "1720"; repStart "-6346"; chr8 rmsk exon 53523624 53524714 4556 - . gene_id "HERV3_8q11.23"; transcript_id "HERV3_8q11.23"; locus "HERV3_8q11.23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0037"; repClass "LTR"; repEnd "1480"; repFamily "ERV1"; repLeft "327"; repStart "-6946"; ### HERVEA_8q11.23a ### chr8 rmsk gene 53523217 53525671 . - . gene_id "HERVEA_8q11.23a"; transcript_id "HERVEA_8q11.23a"; locus "HERVEA_8q11.23a"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0053"; model_cov "905"; model_pct "11.5"; chr8 rmsk exon 53523217 53523628 2965 - . gene_id "HERVEA_8q11.23a"; transcript_id "HERVEA_8q11.23a"; locus "HERVEA_8q11.23a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0053"; repClass "LTR"; repEnd "4351"; repFamily "ERV1"; repLeft "3939"; repStart "-3496"; chr8 rmsk exon 53524732 53525195 2614 - . gene_id "HERVEA_8q11.23a"; transcript_id "HERVEA_8q11.23a"; locus "HERVEA_8q11.23a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0053"; repClass "LTR"; repEnd "494"; repFamily "ERV1"; repLeft "1"; repStart "-7353"; chr8 rmsk exon 53525196 53525491 3047 - . gene_id "HERVEA_8q11.23a"; transcript_id "HERVEA_8q11.23a"; locus "HERVEA_8q11.23a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE_a-int_0053"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "173"; repStart "0"; chr8 rmsk exon 53525526 53525671 3047 - . gene_id "HERVEA_8q11.23a"; transcript_id "HERVEA_8q11.23a"; locus "HERVEA_8q11.23a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE_a-int_0053"; repClass "LTR"; repEnd "172"; repFamily "ERV1"; repLeft "5"; repStart "-329"; ### ERVLE_8q11.23c ### chr8 rmsk gene 53597940 53600482 . + . gene_id "ERVLE_8q11.23c"; transcript_id "ERVLE_8q11.23c"; locus "ERVLE_8q11.23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2066"; model_cov "1680"; model_pct "29.6"; chr8 rmsk exon 53597940 53598144 1239 + . gene_id "ERVLE_8q11.23c"; transcript_id "ERVLE_8q11.23c"; locus "ERVLE_8q11.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2066"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "-3319"; repStart "2092"; chr8 rmsk exon 53598538 53598997 1239 + . gene_id "ERVLE_8q11.23c"; transcript_id "ERVLE_8q11.23c"; locus "ERVLE_8q11.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2066"; repClass "LTR"; repEnd "2820"; repFamily "ERVL"; repLeft "-2847"; repStart "2349"; chr8 rmsk exon 53599056 53599420 634 + . gene_id "ERVLE_8q11.23c"; transcript_id "ERVLE_8q11.23c"; locus "ERVLE_8q11.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2066"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "-2331"; repStart "2913"; chr8 rmsk exon 53600005 53600482 630 + . gene_id "ERVLE_8q11.23c"; transcript_id "ERVLE_8q11.23c"; locus "ERVLE_8q11.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2066"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "-1276"; repStart "3861"; ### HML3_8q11.23b ### chr8 rmsk gene 53617072 53624085 . + . gene_id "HML3_8q11.23b"; transcript_id "HML3_8q11.23b"; locus "HML3_8q11.23b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0139"; model_cov "6018"; model_pct "100.0"; chr8 rmsk exon 53617072 53617579 3792 + . gene_id "HML3_8q11.23b"; transcript_id "HML3_8q11.23b"; locus "HML3_8q11.23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0139"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 53617580 53623586 48726 + . gene_id "HML3_8q11.23b"; transcript_id "HML3_8q11.23b"; locus "HML3_8q11.23b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0139"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr8 rmsk exon 53623589 53624085 3901 + . gene_id "HML3_8q11.23b"; transcript_id "HML3_8q11.23b"; locus "HML3_8q11.23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0139"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVEA_8q11.23b ### chr8 rmsk gene 53731284 53737226 . + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0054"; model_cov "5137"; model_pct "65.5"; chr8 rmsk exon 53731284 53731741 2588 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 53731742 53732315 3034 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "599"; repFamily "ERV1"; repLeft "-7248"; repStart "1"; chr8 rmsk exon 53732330 53733189 2824 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "1006"; repFamily "ERV1"; repLeft "-6841"; repStart "142"; chr8 rmsk exon 53733192 53736173 14398 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "5703"; repFamily "ERV1"; repLeft "-2144"; repStart "2350"; chr8 rmsk exon 53736215 53736494 893 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "6763"; repFamily "ERV1"; repLeft "-1084"; repStart "6441"; chr8 rmsk exon 53736774 53737226 2510 + . gene_id "HERVEA_8q11.23b"; transcript_id "HERVEA_8q11.23b"; locus "HERVEA_8q11.23b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0054"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_8q11.23c ### chr8 rmsk gene 54074261 54077013 . + . gene_id "HML3_8q11.23c"; transcript_id "HML3_8q11.23c"; locus "HML3_8q11.23c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0140"; model_cov "2267"; model_pct "37.7"; chr8 rmsk exon 54074261 54074383 1012 + . gene_id "HML3_8q11.23c"; transcript_id "HML3_8q11.23c"; locus "HML3_8q11.23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0140"; repClass "LTR"; repEnd "2796"; repFamily "ERVK"; repLeft "-3225"; repStart "2675"; chr8 rmsk exon 54074375 54076515 17765 + . gene_id "HML3_8q11.23c"; transcript_id "HML3_8q11.23c"; locus "HML3_8q11.23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0140"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3875"; chr8 rmsk exon 54076516 54077013 4145 + . gene_id "HML3_8q11.23c"; transcript_id "HML3_8q11.23c"; locus "HML3_8q11.23c"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0140"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_8q11.23b ### chr8 rmsk gene 54183988 54189099 . + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0239"; model_cov "1207"; model_pct "21.8"; chr8 rmsk exon 54183988 54184292 2131 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "-1621"; repStart "3606"; chr8 rmsk exon 54184709 54184921 2131 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "4119"; repFamily "ERVL"; repLeft "-1411"; repStart "3910"; chr8 rmsk exon 54185962 54186248 2033 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "4418"; repFamily "ERVL"; repLeft "-1112"; repStart "4135"; chr8 rmsk exon 54186616 54186851 2033 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "4650"; repFamily "ERVL"; repLeft "-880"; repStart "4419"; chr8 rmsk exon 54187771 54187817 686 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "5322"; repFamily "ERVL"; repLeft "-208"; repStart "5284"; chr8 rmsk exon 54188099 54188305 795 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "5432"; repFamily "ERVL"; repLeft "-98"; repStart "5289"; chr8 rmsk exon 54188332 54188423 1718 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "90"; repFamily "ERVL"; repLeft "-372"; repStart "5"; chr8 rmsk exon 54188733 54189099 1718 + . gene_id "HERVL40_8q11.23b"; transcript_id "HERVL40_8q11.23b"; locus "HERVL40_8q11.23b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0239"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-17"; repStart "91"; ### ERV316A3_8q12.1a ### chr8 rmsk gene 54952787 54958591 . - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1547"; model_cov "3916"; model_pct "74.9"; chr8 rmsk exon 54952787 54953179 850 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "11"; repStart "-4"; chr8 rmsk exon 54953600 54955711 5110 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "2951"; repStart "-8"; chr8 rmsk exon 54956018 54956335 3425 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "2189"; repStart "-2732"; chr8 rmsk exon 54956794 54958047 3425 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "2188"; repFamily "ERVL"; repLeft "953"; repStart "-3038"; chr8 rmsk exon 54958145 54958246 277 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "203"; repFamily "ERVL"; repLeft "94"; repStart "-5023"; chr8 rmsk exon 54958368 54958591 441 - . gene_id "ERV316A3_8q12.1a"; transcript_id "ERV316A3_8q12.1a"; locus "ERV316A3_8q12.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1547"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "194"; repStart "-2"; ### HARLEQUIN_8q12.1a ### chr8 rmsk gene 55706083 55716049 . + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0112"; model_cov "6651"; model_pct "96.4"; chr8 rmsk exon 55706083 55706545 3875 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 55706546 55707336 5868 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "-158"; repFamily "ERV1"; repLeft "-7054"; repStart "-950"; chr8 rmsk exon 55707332 55707782 3127 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "1489"; repFamily "ERV1"; repLeft "-5407"; repStart "1048"; chr8 rmsk exon 55709864 55711008 40268 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "2616"; repFamily "ERV1"; repLeft "-4280"; repStart "1477"; chr8 rmsk exon 55711315 55715587 40268 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2617"; chr8 rmsk exon 55715588 55716049 3756 + . gene_id "HARLEQUIN_8q12.1a"; transcript_id "HARLEQUIN_8q12.1a"; locus "HARLEQUIN_8q12.1a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0112"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_8q12.1a ### chr8 rmsk gene 55723558 55729046 . - . gene_id "MER41_8q12.1a"; transcript_id "MER41_8q12.1a"; locus "MER41_8q12.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0293"; model_cov "4401"; model_pct "74.0"; chr8 rmsk exon 55723558 55724191 4091 - . gene_id "MER41_8q12.1a"; transcript_id "MER41_8q12.1a"; locus "MER41_8q12.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0293"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 55724205 55726537 18054 - . gene_id "MER41_8q12.1a"; transcript_id "MER41_8q12.1a"; locus "MER41_8q12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0293"; repClass "LTR"; repEnd "5932"; repFamily "ERV1"; repLeft "3598"; repStart "-14"; chr8 rmsk exon 55726989 55729046 19737 - . gene_id "MER41_8q12.1a"; transcript_id "MER41_8q12.1a"; locus "MER41_8q12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0293"; repClass "LTR"; repEnd "3605"; repFamily "ERV1"; repLeft "1538"; repStart "-2341"; ### MER41_8q12.1b ### chr8 rmsk gene 55729095 55732243 . - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0294"; model_cov "1533"; model_pct "25.8"; chr8 rmsk exon 55729095 55730298 19737 - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0294"; repClass "LTR"; repEnd "3605"; repFamily "ERV1"; repLeft "2394"; repStart "-2341"; chr8 rmsk exon 55730609 55730856 19737 - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0294"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "101"; repStart "-5621"; chr8 rmsk exon 55731157 55731208 19737 - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0294"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "69"; repStart "-5846"; chr8 rmsk exon 55731509 55731575 19737 - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0294"; repClass "LTR"; repEnd "68"; repFamily "ERV1"; repLeft "1"; repStart "-5878"; chr8 rmsk exon 55731576 55732243 4104 - . gene_id "MER41_8q12.1b"; transcript_id "MER41_8q12.1b"; locus "MER41_8q12.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0294"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_8q12.1a ### chr8 rmsk gene 56140391 56143961 . - . gene_id "ERVLB4_8q12.1a"; transcript_id "ERVLB4_8q12.1a"; locus "ERVLB4_8q12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0935"; model_cov "1513"; model_pct "26.5"; chr8 rmsk exon 56140391 56140842 1543 - . gene_id "ERVLB4_8q12.1a"; transcript_id "ERVLB4_8q12.1a"; locus "ERVLB4_8q12.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0935"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "93"; repStart "0"; chr8 rmsk exon 56140843 56141639 4525 - . gene_id "ERVLB4_8q12.1a"; transcript_id "ERVLB4_8q12.1a"; locus "ERVLB4_8q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0935"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4919"; repStart "0"; chr8 rmsk exon 56141643 56141871 4128 - . gene_id "ERVLB4_8q12.1a"; transcript_id "ERVLB4_8q12.1a"; locus "ERVLB4_8q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0935"; repClass "LTR"; repEnd "2330"; repFamily "ERVL"; repLeft "2104"; repStart "-3384"; chr8 rmsk exon 56143486 56143961 4128 - . gene_id "ERVLB4_8q12.1a"; transcript_id "ERVLB4_8q12.1a"; locus "ERVLB4_8q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0935"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "1611"; repStart "-3611"; ### MER4_8q12.1a ### chr8 rmsk gene 56364987 56368316 . - . gene_id "MER4_8q12.1a"; transcript_id "MER4_8q12.1a"; locus "MER4_8q12.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0419"; model_cov "2742"; model_pct "41.6"; chr8 rmsk exon 56364987 56365451 3472 - . gene_id "MER4_8q12.1a"; transcript_id "MER4_8q12.1a"; locus "MER4_8q12.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0419"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 56365458 56367063 17840 - . gene_id "MER4_8q12.1a"; transcript_id "MER4_8q12.1a"; locus "MER4_8q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0419"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4958"; repStart "-2"; chr8 rmsk exon 56367348 56368316 17840 - . gene_id "MER4_8q12.1a"; transcript_id "MER4_8q12.1a"; locus "MER4_8q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0419"; repClass "LTR"; repEnd "4957"; repFamily "ERV1"; repLeft "3853"; repStart "-1641"; ### MER4_8q12.1b ### chr8 rmsk gene 56368454 56370698 . - . gene_id "MER4_8q12.1b"; transcript_id "MER4_8q12.1b"; locus "MER4_8q12.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0420"; model_cov "1534"; model_pct "23.2"; chr8 rmsk exon 56368454 56368795 17840 - . gene_id "MER4_8q12.1b"; transcript_id "MER4_8q12.1b"; locus "MER4_8q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0420"; repClass "LTR"; repEnd "4957"; repFamily "ERV1"; repLeft "4566"; repStart "-1641"; chr8 rmsk exon 56369100 56369517 17840 - . gene_id "MER4_8q12.1b"; transcript_id "MER4_8q12.1b"; locus "MER4_8q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0420"; repClass "LTR"; repEnd "3460"; repFamily "ERV1"; repLeft "2993"; repStart "-3138"; chr8 rmsk exon 56369810 56370072 17840 - . gene_id "MER4_8q12.1b"; transcript_id "MER4_8q12.1b"; locus "MER4_8q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0420"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "2738"; repStart "-3606"; chr8 rmsk exon 56370301 56370698 2460 - . gene_id "MER4_8q12.1b"; transcript_id "MER4_8q12.1b"; locus "MER4_8q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0420"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2073"; repStart "-4103"; ### MER34B_8q12.1 ### chr8 rmsk gene 56639313 56641906 . - . gene_id "MER34B_8q12.1"; transcript_id "MER34B_8q12.1"; locus "MER34B_8q12.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0162"; model_cov "3663"; model_pct "68.4"; chr8 rmsk exon 56639313 56639674 752 - . gene_id "MER34B_8q12.1"; transcript_id "MER34B_8q12.1"; locus "MER34B_8q12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0162"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "4605"; repStart "-397"; chr8 rmsk exon 56639658 56641906 5216 - . gene_id "MER34B_8q12.1"; transcript_id "MER34B_8q12.1"; locus "MER34B_8q12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0162"; repClass "LTR"; repEnd "3244"; repFamily "ERV1"; repLeft "-65"; repStart "-2112"; ### ERVLE_8q12.1a ### chr8 rmsk gene 56661562 56663011 . - . gene_id "ERVLE_8q12.1a"; transcript_id "ERVLE_8q12.1a"; locus "ERVLE_8q12.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2068"; model_cov "748"; model_pct "13.2"; chr8 rmsk exon 56661562 56661704 1732 - . gene_id "ERVLE_8q12.1a"; transcript_id "ERVLE_8q12.1a"; locus "ERVLE_8q12.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2068"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "474"; repStart "-43"; chr8 rmsk exon 56661785 56662204 1732 - . gene_id "ERVLE_8q12.1a"; transcript_id "ERVLE_8q12.1a"; locus "ERVLE_8q12.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2068"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "2"; repStart "-193"; chr8 rmsk exon 56662264 56662665 949 - . gene_id "ERVLE_8q12.1a"; transcript_id "ERVLE_8q12.1a"; locus "ERVLE_8q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2068"; repClass "LTR"; repEnd "5481"; repFamily "ERVL"; repLeft "5086"; repStart "-186"; chr8 rmsk exon 56662665 56663011 1663 - . gene_id "ERVLE_8q12.1a"; transcript_id "ERVLE_8q12.1a"; locus "ERVLE_8q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2068"; repClass "LTR"; repEnd "2476"; repFamily "ERVL"; repLeft "2123"; repStart "-3191"; ### ERVLE_8q12.1b ### chr8 rmsk gene 56941300 56942994 . + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2069"; model_cov "876"; model_pct "15.5"; chr8 rmsk exon 56941300 56941398 467 + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2069"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "-43"; repStart "520"; chr8 rmsk exon 56941743 56941792 258 + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2069"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "613"; chr8 rmsk exon 56941854 56942181 2265 + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2069"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-5268"; repStart "49"; chr8 rmsk exon 56942492 56942726 2265 + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2069"; repClass "LTR"; repEnd "635"; repFamily "ERVL"; repLeft "-5032"; repStart "400"; chr8 rmsk exon 56942741 56942994 727 + . gene_id "ERVLE_8q12.1b"; transcript_id "ERVLE_8q12.1b"; locus "ERVLE_8q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2069"; repClass "LTR"; repEnd "975"; repFamily "ERVL"; repLeft "-4692"; repStart "684"; ### HERVFRD_8q12.1a ### chr8 rmsk gene 57202513 57203980 . - . gene_id "HERVFRD_8q12.1a"; transcript_id "HERVFRD_8q12.1a"; locus "HERVFRD_8q12.1a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0092"; model_cov "931"; model_pct "12.9"; chr8 rmsk exon 57202513 57203371 2269 - . gene_id "HERVFRD_8q12.1a"; transcript_id "HERVFRD_8q12.1a"; locus "HERVFRD_8q12.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0092"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "730"; repStart "-5544"; chr8 rmsk exon 57203372 57203980 1508 - . gene_id "HERVFRD_8q12.1a"; transcript_id "HERVFRD_8q12.1a"; locus "HERVFRD_8q12.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0092"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "11"; repStart "-123"; ### HERVFRD_8q12.1b ### chr8 rmsk gene 57209256 57210965 . - . gene_id "HERVFRD_8q12.1b"; transcript_id "HERVFRD_8q12.1b"; locus "HERVFRD_8q12.1b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0093"; model_cov "908"; model_pct "12.6"; chr8 rmsk exon 57209256 57210098 2155 - . gene_id "HERVFRD_8q12.1b"; transcript_id "HERVFRD_8q12.1b"; locus "HERVFRD_8q12.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0093"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "729"; repStart "-5568"; chr8 rmsk exon 57210109 57210427 1080 - . gene_id "HERVFRD_8q12.1b"; transcript_id "HERVFRD_8q12.1b"; locus "HERVFRD_8q12.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0093"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "286"; repStart "-134"; chr8 rmsk exon 57210498 57210965 828 - . gene_id "HERVFRD_8q12.1b"; transcript_id "HERVFRD_8q12.1b"; locus "HERVFRD_8q12.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0093"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "28"; repStart "-231"; ### HERVFRD_8q12.1c ### chr8 rmsk gene 57213635 57215085 . - . gene_id "HERVFRD_8q12.1c"; transcript_id "HERVFRD_8q12.1c"; locus "HERVFRD_8q12.1c"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0094"; model_cov "898"; model_pct "12.5"; chr8 rmsk exon 57213635 57214467 2076 - . gene_id "HERVFRD_8q12.1c"; transcript_id "HERVFRD_8q12.1c"; locus "HERVFRD_8q12.1c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0094"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "739"; repStart "-5568"; chr8 rmsk exon 57214477 57215085 1485 - . gene_id "HERVFRD_8q12.1c"; transcript_id "HERVFRD_8q12.1c"; locus "HERVFRD_8q12.1c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0094"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "10"; repStart "-123"; ### HERVFRD_8q12.1d ### chr8 rmsk gene 57219004 57222203 . - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; category "unknown"; intModel "MER50-int"; locid "MER50-int_0095"; model_cov "922"; model_pct "12.8"; chr8 rmsk exon 57219004 57219613 2192 - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0095"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "973"; repStart "-5544"; chr8 rmsk exon 57219614 57220044 1073 - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0095"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "1"; repStart "-308"; chr8 rmsk exon 57220866 57221359 1276 - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0095"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "9"; repStart "-217"; chr8 rmsk exon 57221603 57221840 852 - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0095"; repClass "LTR"; repEnd "964"; repFamily "ERV1"; repLeft "730"; repStart "-6241"; chr8 rmsk exon 57221846 57222203 1070 - . gene_id "HERVFRD_8q12.1d"; transcript_id "HERVFRD_8q12.1d"; locus "HERVFRD_8q12.1d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0095"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "257"; repStart "-128"; ### HUERSP3_8q12.1 ### chr8 rmsk gene 57222400 57224779 . - . gene_id "HUERSP3_8q12.1"; transcript_id "HUERSP3_8q12.1"; locus "HUERSP3_8q12.1"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0106"; model_cov "1962"; model_pct "22.0"; chr8 rmsk exon 57222400 57223076 2944 - . gene_id "HUERSP3_8q12.1"; transcript_id "HUERSP3_8q12.1"; locus "HUERSP3_8q12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0106"; repClass "LTR"; repEnd "2455"; repFamily "ERV1"; repLeft "1791"; repStart "-6464"; chr8 rmsk exon 57223075 57223628 2693 - . gene_id "HUERSP3_8q12.1"; transcript_id "HUERSP3_8q12.1"; locus "HUERSP3_8q12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0106"; repClass "LTR"; repEnd "1300"; repFamily "ERV1"; repLeft "642"; repStart "-7619"; chr8 rmsk exon 57223672 57224303 2627 - . gene_id "HUERSP3_8q12.1"; transcript_id "HUERSP3_8q12.1"; locus "HUERSP3_8q12.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0106"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "1"; repStart "-8278"; chr8 rmsk exon 57224304 57224779 2134 - . gene_id "HUERSP3_8q12.1"; transcript_id "HUERSP3_8q12.1"; locus "HUERSP3_8q12.1"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0106"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "175"; repStart "0"; ### HERVFRD_8q12.1e ### chr8 rmsk gene 57297414 57299663 . - . gene_id "HERVFRD_8q12.1e"; transcript_id "HERVFRD_8q12.1e"; locus "HERVFRD_8q12.1e"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0096"; model_cov "1645"; model_pct "22.8"; chr8 rmsk exon 57297414 57298951 5467 - . gene_id "HERVFRD_8q12.1e"; transcript_id "HERVFRD_8q12.1e"; locus "HERVFRD_8q12.1e"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0096"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "16"; repStart "-5544"; chr8 rmsk exon 57298967 57299663 3697 - . gene_id "HERVFRD_8q12.1e"; transcript_id "HERVFRD_8q12.1e"; locus "HERVFRD_8q12.1e"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0096"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### HERVFRD_8q12.1f ### chr8 rmsk gene 57366532 57372856 . + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0097"; model_cov "5391"; model_pct "74.8"; chr8 rmsk exon 57366532 57366898 2080 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0097"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "354"; chr8 rmsk exon 57366901 57368635 6108 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0097"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "9"; chr8 rmsk exon 57368631 57371483 16244 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0097"; repClass "LTR"; repEnd "5736"; repFamily "ERV1"; repLeft "-1469"; repStart "2787"; chr8 rmsk exon 57371529 57371809 16244 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0097"; repClass "LTR"; repEnd "6025"; repFamily "ERV1"; repLeft "-1180"; repStart "5737"; chr8 rmsk exon 57371811 57372124 2247 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0097"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6883"; chr8 rmsk exon 57372125 57372856 3829 + . gene_id "HERVFRD_8q12.1f"; transcript_id "HERVFRD_8q12.1f"; locus "HERVFRD_8q12.1f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0097"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "-24"; repStart "1"; ### PRIMA41_8q12.1 ### chr8 rmsk gene 57416491 57418887 . - . gene_id "PRIMA41_8q12.1"; transcript_id "PRIMA41_8q12.1"; locus "PRIMA41_8q12.1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0078"; model_cov "1217"; model_pct "15.7"; chr8 rmsk exon 57416491 57417301 896 - . gene_id "PRIMA41_8q12.1"; transcript_id "PRIMA41_8q12.1"; locus "PRIMA41_8q12.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0078"; repClass "LTR"; repEnd "6136"; repFamily "ERV1"; repLeft "5342"; repStart "-1620"; chr8 rmsk exon 57418030 57418116 277 - . gene_id "PRIMA41_8q12.1"; transcript_id "PRIMA41_8q12.1"; locus "PRIMA41_8q12.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0078"; repClass "LTR"; repEnd "2818"; repFamily "ERV1"; repLeft "2734"; repStart "-4938"; chr8 rmsk exon 57418493 57418887 643 - . gene_id "PRIMA41_8q12.1"; transcript_id "PRIMA41_8q12.1"; locus "PRIMA41_8q12.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0078"; repClass "LTR"; repEnd "2397"; repFamily "ERV1"; repLeft "2058"; repStart "-5359"; ### HML5_8q12.1 ### chr8 rmsk gene 57456154 57462062 . + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0072"; model_cov "5070"; model_pct "74.2"; chr8 rmsk exon 57456154 57456627 2698 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 57456630 57457368 4912 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "-6096"; repStart "3"; chr8 rmsk exon 57457799 57457920 600 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "2449"; repFamily "ERVK"; repLeft "-4388"; repStart "2327"; chr8 rmsk exon 57457923 57461509 15004 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "6291"; repFamily "ERVK"; repLeft "-546"; repStart "2625"; chr8 rmsk exon 57461485 57461643 960 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "4927"; repFamily "ERVK"; repLeft "-1910"; repStart "4767"; chr8 rmsk exon 57461673 57462062 2823 + . gene_id "HML5_8q12.1"; transcript_id "HML5_8q12.1"; locus "HML5_8q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0072"; repClass "LTR"; repEnd "6688"; repFamily "ERVK"; repLeft "-149"; repStart "6304"; ### HML6_8q12.1 ### chr8 rmsk gene 57463755 57466172 . + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; category "unknown"; intModel "HERVK3-int"; locid "HERVK3-int_0048"; model_cov "1291"; model_pct "17.9"; chr8 rmsk exon 57463755 57463849 403 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "-6563"; repStart "545"; chr8 rmsk exon 57463838 57465500 4638 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-4934"; repStart "1280"; chr8 rmsk exon 57465563 57465617 441 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "7120"; repFamily "ERVK"; repLeft "-82"; repStart "7066"; chr8 rmsk exon 57465647 57465975 1856 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "495"; repFamily "ERVK"; repLeft "-4"; repStart "159"; chr8 rmsk exon 57465977 57466015 245 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "497"; repFamily "ERVK"; repLeft "-2"; repStart "460"; chr8 rmsk exon 57466018 57466172 1022 + . gene_id "HML6_8q12.1"; transcript_id "HML6_8q12.1"; locus "HML6_8q12.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0048"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "7047"; ### ERVLE_8q12.1c ### chr8 rmsk gene 57572139 57574380 . - . gene_id "ERVLE_8q12.1c"; transcript_id "ERVLE_8q12.1c"; locus "ERVLE_8q12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2070"; model_cov "804"; model_pct "14.2"; chr8 rmsk exon 57572139 57572245 440 - . gene_id "ERVLE_8q12.1c"; transcript_id "ERVLE_8q12.1c"; locus "ERVLE_8q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2070"; repClass "LTR"; repEnd "4662"; repFamily "ERVL"; repLeft "4561"; repStart "-1005"; chr8 rmsk exon 57573652 57574380 989 - . gene_id "ERVLE_8q12.1c"; transcript_id "ERVLE_8q12.1c"; locus "ERVLE_8q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2070"; repClass "LTR"; repEnd "3385"; repFamily "ERVL"; repLeft "2682"; repStart "-2282"; ### ERVLE_8q12.1d ### chr8 rmsk gene 57808912 57810842 . - . gene_id "ERVLE_8q12.1d"; transcript_id "ERVLE_8q12.1d"; locus "ERVLE_8q12.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2071"; model_cov "1920"; model_pct "33.9"; chr8 rmsk exon 57808912 57809709 960 - . gene_id "ERVLE_8q12.1d"; transcript_id "ERVLE_8q12.1d"; locus "ERVLE_8q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2071"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4350"; repStart "-461"; chr8 rmsk exon 57809750 57810842 1734 - . gene_id "ERVLE_8q12.1d"; transcript_id "ERVLE_8q12.1d"; locus "ERVLE_8q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2071"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "1877"; repStart "-2726"; ### ERVLB4_8q12.1b ### chr8 rmsk gene 57973730 57975914 . - . gene_id "ERVLB4_8q12.1b"; transcript_id "ERVLB4_8q12.1b"; locus "ERVLB4_8q12.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0937"; model_cov "1726"; model_pct "30.2"; chr8 rmsk exon 57973730 57974261 1448 - . gene_id "ERVLB4_8q12.1b"; transcript_id "ERVLB4_8q12.1b"; locus "ERVLB4_8q12.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0937"; repClass "LTR"; repEnd "597"; repFamily "ERVL"; repLeft "1"; repStart "-66"; chr8 rmsk exon 57974265 57975142 2359 - . gene_id "ERVLB4_8q12.1b"; transcript_id "ERVLB4_8q12.1b"; locus "ERVLB4_8q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0937"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "4759"; repStart "-3"; chr8 rmsk exon 57975189 57975914 3813 - . gene_id "ERVLB4_8q12.1b"; transcript_id "ERVLB4_8q12.1b"; locus "ERVLB4_8q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0937"; repClass "LTR"; repEnd "4691"; repFamily "ERVL"; repLeft "3917"; repStart "-1023"; ### ERV316A3_8q12.1b ### chr8 rmsk gene 58224847 58226053 . - . gene_id "ERV316A3_8q12.1b"; transcript_id "ERV316A3_8q12.1b"; locus "ERV316A3_8q12.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1548"; model_cov "867"; model_pct "16.6"; chr8 rmsk exon 58224847 58225232 658 - . gene_id "ERV316A3_8q12.1b"; transcript_id "ERV316A3_8q12.1b"; locus "ERV316A3_8q12.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1548"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr8 rmsk exon 58225234 58226053 1919 - . gene_id "ERV316A3_8q12.1b"; transcript_id "ERV316A3_8q12.1b"; locus "ERV316A3_8q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1548"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4358"; repStart "-1"; ### HERVL32_8q12.1 ### chr8 rmsk gene 58533573 58535735 . - . gene_id "HERVL32_8q12.1"; transcript_id "HERVL32_8q12.1"; locus "HERVL32_8q12.1"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0033"; model_cov "1652"; model_pct "48.3"; chr8 rmsk exon 58533573 58534879 3660 - . gene_id "HERVL32_8q12.1"; transcript_id "HERVL32_8q12.1"; locus "HERVL32_8q12.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0033"; repClass "LTR"; repEnd "1948"; repFamily "ERVL"; repLeft "646"; repStart "-1470"; chr8 rmsk exon 58534959 58535290 583 - . gene_id "HERVL32_8q12.1"; transcript_id "HERVL32_8q12.1"; locus "HERVL32_8q12.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0033"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "1"; repStart "-3067"; chr8 rmsk exon 58535291 58535735 2187 - . gene_id "HERVL32_8q12.1"; transcript_id "HERVL32_8q12.1"; locus "HERVL32_8q12.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0033"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HARLEQUIN_8q12.1b ### chr8 rmsk gene 58692137 58698872 . + . gene_id "HARLEQUIN_8q12.1b"; transcript_id "HARLEQUIN_8q12.1b"; locus "HARLEQUIN_8q12.1b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0114"; model_cov "6251"; model_pct "90.6"; chr8 rmsk exon 58692137 58693316 8176 + . gene_id "HARLEQUIN_8q12.1b"; transcript_id "HARLEQUIN_8q12.1b"; locus "HARLEQUIN_8q12.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0114"; repClass "LTR"; repEnd "1425"; repFamily "ERV1"; repLeft "-5471"; repStart "263"; chr8 rmsk exon 58693296 58698410 38193 + . gene_id "HARLEQUIN_8q12.1b"; transcript_id "HARLEQUIN_8q12.1b"; locus "HARLEQUIN_8q12.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0114"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1807"; chr8 rmsk exon 58698411 58698872 3619 + . gene_id "HARLEQUIN_8q12.1b"; transcript_id "HARLEQUIN_8q12.1b"; locus "HARLEQUIN_8q12.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0114"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_8q12.1c ### chr8 rmsk gene 59158895 59159946 . + . gene_id "ERVLB4_8q12.1c"; transcript_id "ERVLB4_8q12.1c"; locus "ERVLB4_8q12.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0938"; model_cov "1062"; model_pct "18.6"; chr8 rmsk exon 59158895 59159946 5485 + . gene_id "ERVLB4_8q12.1c"; transcript_id "ERVLB4_8q12.1c"; locus "ERVLB4_8q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0938"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "-782"; repStart "3870"; ### ERVLE_8q12.1e ### chr8 rmsk gene 59359094 59359591 . + . gene_id "ERVLE_8q12.1e"; transcript_id "ERVLE_8q12.1e"; locus "ERVLE_8q12.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2074"; model_cov "570"; model_pct "10.1"; chr8 rmsk exon 59359094 59359591 769 + . gene_id "ERVLE_8q12.1e"; transcript_id "ERVLE_8q12.1e"; locus "ERVLE_8q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2074"; repClass "LTR"; repEnd "3376"; repFamily "ERVL"; repLeft "-2291"; repStart "2806"; ### MER4_8q12.1c ### chr8 rmsk gene 60300150 60304059 . - . gene_id "MER4_8q12.1c"; transcript_id "MER4_8q12.1c"; locus "MER4_8q12.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0422"; model_cov "4559"; model_pct "69.1"; chr8 rmsk exon 60300150 60300597 2818 - . gene_id "MER4_8q12.1c"; transcript_id "MER4_8q12.1c"; locus "MER4_8q12.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0422"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr8 rmsk exon 60300599 60303541 15828 - . gene_id "MER4_8q12.1c"; transcript_id "MER4_8q12.1c"; locus "MER4_8q12.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0422"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "2244"; repStart "0"; chr8 rmsk exon 60303897 60304059 10063 - . gene_id "MER4_8q12.1c"; transcript_id "MER4_8q12.1c"; locus "MER4_8q12.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0422"; repClass "LTR"; repEnd "3606"; repFamily "ERV1"; repLeft "3401"; repStart "-2992"; ### MER4_8q12.1d ### chr8 rmsk gene 60304301 60305379 . - . gene_id "MER4_8q12.1d"; transcript_id "MER4_8q12.1d"; locus "MER4_8q12.1d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0423"; model_cov "1092"; model_pct "16.6"; chr8 rmsk exon 60304301 60304986 10063 - . gene_id "MER4_8q12.1d"; transcript_id "MER4_8q12.1d"; locus "MER4_8q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0423"; repClass "LTR"; repEnd "3606"; repFamily "ERV1"; repLeft "2736"; repStart "-2992"; chr8 rmsk exon 60304982 60305134 732 - . gene_id "MER4_8q12.1d"; transcript_id "MER4_8q12.1d"; locus "MER4_8q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0423"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "868"; repStart "-5590"; chr8 rmsk exon 60305296 60305379 433 - . gene_id "MER4_8q12.1d"; transcript_id "MER4_8q12.1d"; locus "MER4_8q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0423"; repClass "LTR"; repEnd "879"; repFamily "ERV1"; repLeft "797"; repStart "-5719"; ### HERVH_8q12.1 ### chr8 rmsk gene 60305380 60312009 . - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0696"; model_cov "6128"; model_pct "79.5"; chr8 rmsk exon 60305380 60305800 2418 - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0696"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "-13"; chr8 rmsk exon 60305803 60306353 3751 - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0696"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "7157"; repStart "-2"; chr8 rmsk exon 60306347 60306767 2514 - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0696"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr8 rmsk exon 60306759 60311570 20314 - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0696"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr8 rmsk exon 60311571 60312009 2622 - . gene_id "HERVH_8q12.1"; transcript_id "HERVH_8q12.1"; locus "HERVH_8q12.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0696"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_8q12.1c ### chr8 rmsk gene 60330628 60331153 . - . gene_id "ERV316A3_8q12.1c"; transcript_id "ERV316A3_8q12.1c"; locus "ERV316A3_8q12.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1550"; model_cov "872"; model_pct "16.7"; chr8 rmsk exon 60330628 60331153 932 - . gene_id "ERV316A3_8q12.1c"; transcript_id "ERV316A3_8q12.1c"; locus "ERV316A3_8q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1550"; repClass "LTR"; repEnd "3755"; repFamily "ERVL"; repLeft "2883"; repStart "-1471"; ### HERVW_8q12.1 ### chr8 rmsk gene 60419414 60425519 . - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0177"; model_cov "5267"; model_pct "61.1"; chr8 rmsk exon 60419414 60419745 2394 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr8 rmsk exon 60419749 60420045 2374 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8326"; repStart "-4"; chr8 rmsk exon 60420027 60420065 273 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr8 rmsk exon 60420062 60420449 3237 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6760"; repStart "-1479"; chr8 rmsk exon 60420450 60424985 38246 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "6498"; repFamily "ERV1"; repLeft "1952"; repStart "-2128"; chr8 rmsk exon 60425017 60425519 3588 - . gene_id "HERVW_8q12.1"; transcript_id "HERVW_8q12.1"; locus "HERVW_8q12.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0177"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HML1_8q12.1 ### chr8 rmsk gene 60493462 60499918 . + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0059"; model_cov "4771"; model_pct "78.3"; chr8 rmsk exon 60493462 60494073 3128 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "16"; chr8 rmsk exon 60494074 60495276 9378 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "1211"; repFamily "ERVK"; repLeft "-4885"; repStart "1"; chr8 rmsk exon 60495268 60496091 12974 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "3468"; repFamily "ERVK"; repLeft "-2628"; repStart "2641"; chr8 rmsk exon 60496388 60497251 12974 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "4310"; repFamily "ERVK"; repLeft "-1786"; repStart "3469"; chr8 rmsk exon 60497250 60497829 1503 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "4544"; repFamily "ERVK"; repLeft "-1552"; repStart "3959"; chr8 rmsk exon 60498006 60499310 2780 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "6071"; repFamily "ERVK"; repLeft "-25"; repStart "4763"; chr8 rmsk exon 60499319 60499918 3060 + . gene_id "HML1_8q12.1"; transcript_id "HML1_8q12.1"; locus "HML1_8q12.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0059"; repClass "LTR"; repEnd "594"; repFamily "ERVK"; repLeft "-14"; repStart "17"; ### ERVLE_8q12.2 ### chr8 rmsk gene 60886194 60890595 . - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2075"; model_cov "3927"; model_pct "69.3"; chr8 rmsk exon 60886194 60886715 2709 - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2075"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4424"; repStart "-746"; chr8 rmsk exon 60887028 60888936 2709 - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2075"; repClass "LTR"; repEnd "4423"; repFamily "ERVL"; repLeft "2228"; repStart "-1244"; chr8 rmsk exon 60889049 60889090 712 - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2075"; repClass "LTR"; repEnd "2286"; repFamily "ERVL"; repLeft "2249"; repStart "-3381"; chr8 rmsk exon 60889403 60889734 712 - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2075"; repClass "LTR"; repEnd "2248"; repFamily "ERVL"; repLeft "1906"; repStart "-3419"; chr8 rmsk exon 60889748 60890595 894 - . gene_id "ERVLE_8q12.2"; transcript_id "ERVLE_8q12.2"; locus "ERVLE_8q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2075"; repClass "LTR"; repEnd "1342"; repFamily "ERVL"; repLeft "486"; repStart "-4325"; ### ERV316A3_8q12.2 ### chr8 rmsk gene 61042797 61048905 . + . gene_id "ERV316A3_8q12.2"; transcript_id "ERV316A3_8q12.2"; locus "ERV316A3_8q12.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1552"; model_cov "3541"; model_pct "67.8"; chr8 rmsk exon 61042797 61044827 3432 + . gene_id "ERV316A3_8q12.2"; transcript_id "ERV316A3_8q12.2"; locus "ERV316A3_8q12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1552"; repClass "LTR"; repEnd "3650"; repFamily "ERVL"; repLeft "-1576"; repStart "1607"; chr8 rmsk exon 61044879 61045856 2132 + . gene_id "ERV316A3_8q12.2"; transcript_id "ERV316A3_8q12.2"; locus "ERV316A3_8q12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1552"; repClass "LTR"; repEnd "4731"; repFamily "ERVL"; repLeft "-495"; repStart "3726"; chr8 rmsk exon 61047988 61048450 551 + . gene_id "ERV316A3_8q12.2"; transcript_id "ERV316A3_8q12.2"; locus "ERV316A3_8q12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1552"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4731"; chr8 rmsk exon 61048464 61048905 958 + . gene_id "ERV316A3_8q12.2"; transcript_id "ERV316A3_8q12.2"; locus "ERV316A3_8q12.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1552"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-25"; repStart "23"; ### ERVLE_8q12.3a ### chr8 rmsk gene 61803988 61807137 . - . gene_id "ERVLE_8q12.3a"; transcript_id "ERVLE_8q12.3a"; locus "ERVLE_8q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2076"; model_cov "2612"; model_pct "46.1"; chr8 rmsk exon 61803988 61804565 643 - . gene_id "ERVLE_8q12.3a"; transcript_id "ERVLE_8q12.3a"; locus "ERVLE_8q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2076"; repClass "LTR"; repEnd "5408"; repFamily "ERVL"; repLeft "4801"; repStart "-259"; chr8 rmsk exon 61805158 61806341 2161 - . gene_id "ERVLE_8q12.3a"; transcript_id "ERVLE_8q12.3a"; locus "ERVLE_8q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2076"; repClass "LTR"; repEnd "4788"; repFamily "ERVL"; repLeft "3561"; repStart "-879"; chr8 rmsk exon 61806341 61806757 896 - . gene_id "ERVLE_8q12.3a"; transcript_id "ERVLE_8q12.3a"; locus "ERVLE_8q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2076"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "2091"; repStart "-3137"; chr8 rmsk exon 61806806 61807137 463 - . gene_id "ERVLE_8q12.3a"; transcript_id "ERVLE_8q12.3a"; locus "ERVLE_8q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2076"; repClass "LTR"; repEnd "1759"; repFamily "ERVL"; repLeft "1420"; repStart "-3908"; ### ERVLB4_8q12.3a ### chr8 rmsk gene 61817711 61825012 . - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0940"; model_cov "5623"; model_pct "98.4"; chr8 rmsk exon 61817711 61817966 691 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "156"; repStart "0"; chr8 rmsk exon 61818168 61818340 691 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "5702"; repFamily "ERVL"; repLeft "5530"; repStart "-12"; chr8 rmsk exon 61818366 61822084 15416 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "5458"; repFamily "ERVL"; repLeft "1620"; repStart "-256"; chr8 rmsk exon 61822390 61822581 15416 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "1619"; repFamily "ERVL"; repLeft "1437"; repStart "-4095"; chr8 rmsk exon 61822897 61824218 15416 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "1436"; repFamily "ERVL"; repLeft "5"; repStart "-4278"; chr8 rmsk exon 61824223 61824333 909 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "297"; repStart "0"; chr8 rmsk exon 61824706 61825012 909 - . gene_id "ERVLB4_8q12.3a"; transcript_id "ERVLB4_8q12.3a"; locus "ERVLB4_8q12.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0940"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "5"; repStart "-101"; ### HERVFRD_8q12.3 ### chr8 rmsk gene 61899275 61903380 . - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0098"; model_cov "2847"; model_pct "39.5"; chr8 rmsk exon 61899275 61900745 11269 - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0098"; repClass "LTR"; repEnd "6047"; repFamily "ERV1"; repLeft "4537"; repStart "-1158"; chr8 rmsk exon 61901055 61901510 11269 - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0098"; repClass "LTR"; repEnd "4536"; repFamily "ERV1"; repLeft "4079"; repStart "-2669"; chr8 rmsk exon 61901886 61902472 2521 - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0098"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "686"; repStart "-5843"; chr8 rmsk exon 61902448 61902648 1162 - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0098"; repClass "LTR"; repEnd "205"; repFamily "ERV1"; repLeft "1"; repStart "-7000"; chr8 rmsk exon 61902679 61903380 4082 - . gene_id "HERVFRD_8q12.3"; transcript_id "HERVFRD_8q12.3"; locus "HERVFRD_8q12.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0098"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "1"; repStart "-14"; ### HUERSP3_8q12.3 ### chr8 rmsk gene 62099706 62102544 . - . gene_id "HUERSP3_8q12.3"; transcript_id "HUERSP3_8q12.3"; locus "HUERSP3_8q12.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0107"; model_cov "1910"; model_pct "21.4"; chr8 rmsk exon 62099706 62100345 2855 - . gene_id "HUERSP3_8q12.3"; transcript_id "HUERSP3_8q12.3"; locus "HUERSP3_8q12.3"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0107"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 62100347 62100706 2484 - . gene_id "HUERSP3_8q12.3"; transcript_id "HUERSP3_8q12.3"; locus "HUERSP3_8q12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0107"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8559"; repStart "0"; chr8 rmsk exon 62101005 62102544 10305 - . gene_id "HUERSP3_8q12.3"; transcript_id "HUERSP3_8q12.3"; locus "HUERSP3_8q12.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0107"; repClass "LTR"; repEnd "8445"; repFamily "ERV1"; repLeft "6895"; repStart "-474"; ### ERVLB4_8q12.3b ### chr8 rmsk gene 62128334 62129013 . - . gene_id "ERVLB4_8q12.3b"; transcript_id "ERVLB4_8q12.3b"; locus "ERVLB4_8q12.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0942"; model_cov "691"; model_pct "12.1"; chr8 rmsk exon 62128334 62129013 770 - . gene_id "ERVLB4_8q12.3b"; transcript_id "ERVLB4_8q12.3b"; locus "ERVLB4_8q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0942"; repClass "LTR"; repEnd "2361"; repFamily "ERVL"; repLeft "1670"; repStart "-3353"; ### ERVLE_8q12.3b ### chr8 rmsk gene 62208838 62209433 . + . gene_id "ERVLE_8q12.3b"; transcript_id "ERVLE_8q12.3b"; locus "ERVLE_8q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2078"; model_cov "611"; model_pct "10.8"; chr8 rmsk exon 62208838 62209433 553 + . gene_id "ERVLE_8q12.3b"; transcript_id "ERVLE_8q12.3b"; locus "ERVLE_8q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2078"; repClass "LTR"; repEnd "1546"; repFamily "ERVL"; repLeft "-4121"; repStart "935"; ### ERVLE_8q12.3c ### chr8 rmsk gene 62214364 62215562 . + . gene_id "ERVLE_8q12.3c"; transcript_id "ERVLE_8q12.3c"; locus "ERVLE_8q12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2079"; model_cov "1266"; model_pct "22.3"; chr8 rmsk exon 62214364 62214421 274 + . gene_id "ERVLE_8q12.3c"; transcript_id "ERVLE_8q12.3c"; locus "ERVLE_8q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2079"; repClass "LTR"; repEnd "2122"; repFamily "ERVL"; repLeft "-3545"; repStart "2064"; chr8 rmsk exon 62214456 62214731 402 + . gene_id "ERVLE_8q12.3c"; transcript_id "ERVLE_8q12.3c"; locus "ERVLE_8q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2079"; repClass "LTR"; repEnd "4105"; repFamily "ERVL"; repLeft "-1562"; repStart "3745"; chr8 rmsk exon 62214766 62215562 2259 + . gene_id "ERVLE_8q12.3c"; transcript_id "ERVLE_8q12.3c"; locus "ERVLE_8q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2079"; repClass "LTR"; repEnd "5018"; repFamily "ERVL"; repLeft "-649"; repStart "4170"; ### ERV316A3_8q12.3a ### chr8 rmsk gene 62418411 62420057 . - . gene_id "ERV316A3_8q12.3a"; transcript_id "ERV316A3_8q12.3a"; locus "ERV316A3_8q12.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1554"; model_cov "1658"; model_pct "31.7"; chr8 rmsk exon 62418411 62420057 1743 - . gene_id "ERV316A3_8q12.3a"; transcript_id "ERV316A3_8q12.3a"; locus "ERV316A3_8q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1554"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "3522"; repStart "-46"; ### HERVW_8q12.3a ### chr8 rmsk gene 62595401 62597370 . - . gene_id "HERVW_8q12.3a"; transcript_id "HERVW_8q12.3a"; locus "HERVW_8q12.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0178"; model_cov "1677"; model_pct "19.4"; chr8 rmsk exon 62595401 62595707 2351 - . gene_id "HERVW_8q12.3a"; transcript_id "HERVW_8q12.3a"; locus "HERVW_8q12.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0178"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "21"; repStart "-454"; chr8 rmsk exon 62595708 62595968 2120 - . gene_id "HERVW_8q12.3a"; transcript_id "HERVW_8q12.3a"; locus "HERVW_8q12.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0178"; repClass "LTR"; repEnd "8595"; repFamily "ERV1"; repLeft "8335"; repStart "-31"; chr8 rmsk exon 62595959 62595997 290 - . gene_id "HERVW_8q12.3a"; transcript_id "HERVW_8q12.3a"; locus "HERVW_8q12.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0178"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr8 rmsk exon 62595991 62597370 11572 - . gene_id "HERVW_8q12.3a"; transcript_id "HERVW_8q12.3a"; locus "HERVW_8q12.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0178"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4640"; repStart "-2607"; ### ERVLE_8q12.3d ### chr8 rmsk gene 63093665 63096052 . - . gene_id "ERVLE_8q12.3d"; transcript_id "ERVLE_8q12.3d"; locus "ERVLE_8q12.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2080"; model_cov "2478"; model_pct "43.7"; chr8 rmsk exon 63093665 63096052 3773 - . gene_id "ERVLE_8q12.3d"; transcript_id "ERVLE_8q12.3d"; locus "ERVLE_8q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2080"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "2673"; repStart "-516"; ### MER61_8q12.3a ### chr8 rmsk gene 63096517 63100529 . + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; category "unknown"; intModel "MER61-int"; locid "MER61-int_0229"; model_cov "2026"; model_pct "38.8"; chr8 rmsk exon 63096517 63096771 1619 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0229"; repClass "LTR"; repEnd "3142"; repFamily "ERV1"; repLeft "-2075"; repStart "2894"; chr8 rmsk exon 63097422 63097716 1833 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0229"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "-97"; repStart "114"; chr8 rmsk exon 63098021 63098125 1833 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0229"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "405"; chr8 rmsk exon 63098158 63098937 11385 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0229"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-1873"; repStart "2567"; chr8 rmsk exon 63099238 63099527 11385 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0229"; repClass "LTR"; repEnd "3623"; repFamily "ERV1"; repLeft "-1594"; repStart "3345"; chr8 rmsk exon 63099822 63100529 11385 + . gene_id "MER61_8q12.3a"; transcript_id "MER61_8q12.3a"; locus "MER61_8q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0229"; repClass "LTR"; repEnd "4347"; repFamily "ERV1"; repLeft "-870"; repStart "3624"; ### HERVH48_8q12.3 ### chr8 rmsk gene 63143887 63147246 . - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0028"; model_cov "2116"; model_pct "31.8"; chr8 rmsk exon 63143887 63144276 2764 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 63144277 63144398 6063 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6544"; repStart "0"; chr8 rmsk exon 63144701 63145521 6063 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "6543"; repFamily "ERV1"; repLeft "5794"; repStart "-111"; chr8 rmsk exon 63145648 63146610 6204 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "445"; repStart "-5215"; chr8 rmsk exon 63146594 63146856 1692 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "264"; repFamily "ERV1"; repLeft "1"; repStart "-6390"; chr8 rmsk exon 63146857 63147246 2824 - . gene_id "HERVH48_8q12.3"; transcript_id "HERVH48_8q12.3"; locus "HERVH48_8q12.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0028"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_8q12.3 ### chr8 rmsk gene 63147339 63153264 . - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0697"; model_cov "5444"; model_pct "70.6"; chr8 rmsk exon 63147339 63147796 3725 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 63147797 63148193 2377 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr8 rmsk exon 63148197 63148609 2647 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "7559"; repFamily "ERV1"; repLeft "7157"; repStart "-154"; chr8 rmsk exon 63148603 63148865 1555 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr8 rmsk exon 63148863 63150660 11193 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "3140"; repStart "-2798"; chr8 rmsk exon 63150647 63152865 13407 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "801"; repStart "-4721"; chr8 rmsk exon 63152837 63153264 2359 - . gene_id "HERVH_8q12.3"; transcript_id "HERVH_8q12.3"; locus "HERVH_8q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0697"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "105"; repStart "-7191"; ### HERVL40_8q12.3 ### chr8 rmsk gene 63229650 63232129 . + . gene_id "HERVL40_8q12.3"; transcript_id "HERVL40_8q12.3"; locus "HERVL40_8q12.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0242"; model_cov "883"; model_pct "16.0"; chr8 rmsk exon 63229650 63229746 264 + . gene_id "HERVL40_8q12.3"; transcript_id "HERVL40_8q12.3"; locus "HERVL40_8q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0242"; repClass "LTR"; repEnd "1943"; repFamily "ERVL"; repLeft "-3587"; repStart "1839"; chr8 rmsk exon 63230989 63231147 489 + . gene_id "HERVL40_8q12.3"; transcript_id "HERVL40_8q12.3"; locus "HERVL40_8q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0242"; repClass "LTR"; repEnd "2399"; repFamily "ERVL"; repLeft "-3131"; repStart "2239"; chr8 rmsk exon 63231509 63231726 489 + . gene_id "HERVL40_8q12.3"; transcript_id "HERVL40_8q12.3"; locus "HERVL40_8q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0242"; repClass "LTR"; repEnd "2616"; repFamily "ERVL"; repLeft "-2914"; repStart "2400"; chr8 rmsk exon 63231727 63232129 749 + . gene_id "HERVL40_8q12.3"; transcript_id "HERVL40_8q12.3"; locus "HERVL40_8q12.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0242"; repClass "LTR"; repEnd "3435"; repFamily "ERVL"; repLeft "-2095"; repStart "3032"; ### HERVL_8q12.3a ### chr8 rmsk gene 63318751 63322088 . + . gene_id "HERVL_8q12.3a"; transcript_id "HERVL_8q12.3a"; locus "HERVL_8q12.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0752"; model_cov "2886"; model_pct "51.0"; chr8 rmsk exon 63318751 63319235 6339 + . gene_id "HERVL_8q12.3a"; transcript_id "HERVL_8q12.3a"; locus "HERVL_8q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0752"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "-4005"; repStart "1165"; chr8 rmsk exon 63319593 63319915 6339 + . gene_id "HERVL_8q12.3a"; transcript_id "HERVL_8q12.3a"; locus "HERVL_8q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0752"; repClass "LTR"; repEnd "1972"; repFamily "ERVL"; repLeft "-3682"; repStart "1650"; chr8 rmsk exon 63320005 63322088 17470 + . gene_id "HERVL_8q12.3a"; transcript_id "HERVL_8q12.3a"; locus "HERVL_8q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0752"; repClass "LTR"; repEnd "4048"; repFamily "ERVL"; repLeft "-1606"; repStart "1968"; ### HUERSP2_8q12.3 ### chr8 rmsk gene 63322097 63326756 . + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0071"; model_cov "2984"; model_pct "96.6"; chr8 rmsk exon 63322097 63322840 5124 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "99"; chr8 rmsk exon 63322841 63322973 493 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "126"; repFamily "ERV1"; repLeft "-2962"; repStart "1"; chr8 rmsk exon 63323242 63323647 1676 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "-2459"; repStart "213"; chr8 rmsk exon 63323789 63326192 16138 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "3075"; repFamily "ERV1"; repLeft "-13"; repStart "632"; chr8 rmsk exon 63326193 63326578 1896 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "-410"; repStart "49"; chr8 rmsk exon 63326561 63326756 1278 + . gene_id "HUERSP2_8q12.3"; transcript_id "HUERSP2_8q12.3"; locus "HUERSP2_8q12.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0071"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "641"; ### HERVL_8q12.3b ### chr8 rmsk gene 63326757 63328797 . + . gene_id "HERVL_8q12.3b"; transcript_id "HERVL_8q12.3b"; locus "HERVL_8q12.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0753"; model_cov "1609"; model_pct "28.5"; chr8 rmsk exon 63326757 63328350 12718 + . gene_id "HERVL_8q12.3b"; transcript_id "HERVL_8q12.3b"; locus "HERVL_8q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0753"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4045"; chr8 rmsk exon 63328351 63328797 3528 + . gene_id "HERVL_8q12.3b"; transcript_id "HERVL_8q12.3b"; locus "HERVL_8q12.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0753"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_8q12.3b ### chr8 rmsk gene 63427158 63428972 . - . gene_id "ERV316A3_8q12.3b"; transcript_id "ERV316A3_8q12.3b"; locus "ERV316A3_8q12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1555"; model_cov "1573"; model_pct "30.1"; chr8 rmsk exon 63427158 63427396 714 - . gene_id "ERV316A3_8q12.3b"; transcript_id "ERV316A3_8q12.3b"; locus "ERV316A3_8q12.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1555"; repClass "LTR"; repEnd "258"; repFamily "ERVL"; repLeft "12"; repStart "-193"; chr8 rmsk exon 63427440 63427704 256 - . gene_id "ERV316A3_8q12.3b"; transcript_id "ERV316A3_8q12.3b"; locus "ERV316A3_8q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1555"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "4921"; repStart "-33"; chr8 rmsk exon 63427709 63428972 2936 - . gene_id "ERV316A3_8q12.3b"; transcript_id "ERV316A3_8q12.3b"; locus "ERV316A3_8q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1555"; repClass "LTR"; repEnd "4769"; repFamily "ERVL"; repLeft "3468"; repStart "-457"; ### ERV316A3_8q12.3c ### chr8 rmsk gene 63431555 63432372 . - . gene_id "ERV316A3_8q12.3c"; transcript_id "ERV316A3_8q12.3c"; locus "ERV316A3_8q12.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1556"; model_cov "654"; model_pct "12.5"; chr8 rmsk exon 63431555 63431783 590 - . gene_id "ERV316A3_8q12.3c"; transcript_id "ERV316A3_8q12.3c"; locus "ERV316A3_8q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1556"; repClass "LTR"; repEnd "3470"; repFamily "ERVL"; repLeft "3234"; repStart "-1756"; chr8 rmsk exon 63431816 63432237 1490 - . gene_id "ERV316A3_8q12.3c"; transcript_id "ERV316A3_8q12.3c"; locus "ERV316A3_8q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1556"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2666"; repStart "-2142"; chr8 rmsk exon 63432292 63432372 275 - . gene_id "ERV316A3_8q12.3c"; transcript_id "ERV316A3_8q12.3c"; locus "ERV316A3_8q12.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1556"; repClass "LTR"; repEnd "272"; repFamily "ERVL"; repLeft "191"; repStart "-179"; ### MER61_8q12.3b ### chr8 rmsk gene 63560893 63561606 . - . gene_id "MER61_8q12.3b"; transcript_id "MER61_8q12.3b"; locus "MER61_8q12.3b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0230"; model_cov "724"; model_pct "13.9"; chr8 rmsk exon 63560893 63561109 1228 - . gene_id "MER61_8q12.3b"; transcript_id "MER61_8q12.3b"; locus "MER61_8q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0230"; repClass "LTR"; repEnd "3918"; repFamily "ERV1"; repLeft "3684"; repStart "-1299"; chr8 rmsk exon 63561107 63561606 2757 - . gene_id "MER61_8q12.3b"; transcript_id "MER61_8q12.3b"; locus "MER61_8q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0230"; repClass "LTR"; repEnd "2764"; repFamily "ERV1"; repLeft "2274"; repStart "-2453"; ### HERVL_8q12.3c ### chr8 rmsk gene 63920510 63926344 . + . gene_id "HERVL_8q12.3c"; transcript_id "HERVL_8q12.3c"; locus "HERVL_8q12.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0754"; model_cov "5156"; model_pct "91.2"; chr8 rmsk exon 63920510 63920891 2821 + . gene_id "HERVL_8q12.3c"; transcript_id "HERVL_8q12.3c"; locus "HERVL_8q12.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0754"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr8 rmsk exon 63921205 63924420 37907 + . gene_id "HERVL_8q12.3c"; transcript_id "HERVL_8q12.3c"; locus "HERVL_8q12.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0754"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-2382"; repStart "1"; chr8 rmsk exon 63924493 63926344 37907 + . gene_id "HERVL_8q12.3c"; transcript_id "HERVL_8q12.3c"; locus "HERVL_8q12.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0754"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "-496"; repStart "3273"; ### HERVL_8q12.3d ### chr8 rmsk gene 64121221 64127799 . - . gene_id "HERVL_8q12.3d"; transcript_id "HERVL_8q12.3d"; locus "HERVL_8q12.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0756"; model_cov "5643"; model_pct "99.8"; chr8 rmsk exon 64121221 64121660 3189 - . gene_id "HERVL_8q12.3d"; transcript_id "HERVL_8q12.3d"; locus "HERVL_8q12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0756"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 64121661 64127254 43402 - . gene_id "HERVL_8q12.3d"; transcript_id "HERVL_8q12.3d"; locus "HERVL_8q12.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0756"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "11"; repStart "0"; chr8 rmsk exon 64127265 64127364 2550 - . gene_id "HERVL_8q12.3d"; transcript_id "HERVL_8q12.3d"; locus "HERVL_8q12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0756"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "377"; repStart "0"; chr8 rmsk exon 64127436 64127799 2550 - . gene_id "HERVL_8q12.3d"; transcript_id "HERVL_8q12.3d"; locus "HERVL_8q12.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0756"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "1"; repStart "-68"; ### ERVLE_8q12.3e ### chr8 rmsk gene 64509760 64510943 . + . gene_id "ERVLE_8q12.3e"; transcript_id "ERVLE_8q12.3e"; locus "ERVLE_8q12.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2081"; model_cov "894"; model_pct "15.8"; chr8 rmsk exon 64509760 64510079 366 + . gene_id "ERVLE_8q12.3e"; transcript_id "ERVLE_8q12.3e"; locus "ERVLE_8q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2081"; repClass "LTR"; repEnd "1759"; repFamily "ERVL"; repLeft "-3908"; repStart "1408"; chr8 rmsk exon 64510392 64510943 1527 + . gene_id "ERVLE_8q12.3e"; transcript_id "ERVLE_8q12.3e"; locus "ERVLE_8q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2081"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "-3178"; repStart "1946"; ### HERVIP10FH_8q12.3 ### chr8 rmsk gene 64763461 64765348 . + . gene_id "HERVIP10FH_8q12.3"; transcript_id "HERVIP10FH_8q12.3"; locus "HERVIP10FH_8q12.3"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0090"; model_cov "1709"; model_pct "33.5"; chr8 rmsk exon 64763461 64764166 5570 + . gene_id "HERVIP10FH_8q12.3"; transcript_id "HERVIP10FH_8q12.3"; locus "HERVIP10FH_8q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0090"; repClass "LTR"; repEnd "-2819"; repFamily "ERV1"; repLeft "-7921"; repStart "-3522"; chr8 rmsk exon 64764383 64765348 6450 + . gene_id "HERVIP10FH_8q12.3"; transcript_id "HERVIP10FH_8q12.3"; locus "HERVIP10FH_8q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0090"; repClass "LTR"; repEnd "1934"; repFamily "ERV1"; repLeft "-3168"; repStart "928"; ### HERVW_8q12.3b ### chr8 rmsk gene 64765352 64768361 . + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0179"; model_cov "4389"; model_pct "50.9"; chr8 rmsk exon 64765352 64765824 3846 + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0179"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "1543"; chr8 rmsk exon 64765810 64767717 10820 + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0179"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2430"; chr8 rmsk exon 64767711 64767749 292 + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0179"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr8 rmsk exon 64767740 64768033 2371 + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0179"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr8 rmsk exon 64768034 64768361 2242 + . gene_id "HERVW_8q12.3b"; transcript_id "HERVW_8q12.3b"; locus "HERVW_8q12.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0179"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_8q12.3f ### chr8 rmsk gene 64811247 64815461 . - . gene_id "ERVLE_8q12.3f"; transcript_id "ERVLE_8q12.3f"; locus "ERVLE_8q12.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2082"; model_cov "3458"; model_pct "61.0"; chr8 rmsk exon 64811247 64813165 4891 - . gene_id "ERVLE_8q12.3f"; transcript_id "ERVLE_8q12.3f"; locus "ERVLE_8q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2082"; repClass "LTR"; repEnd "3971"; repFamily "ERVL"; repLeft "2063"; repStart "-1696"; chr8 rmsk exon 64813169 64813533 1075 - . gene_id "ERVLE_8q12.3f"; transcript_id "ERVLE_8q12.3f"; locus "ERVLE_8q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2082"; repClass "LTR"; repEnd "1866"; repFamily "ERVL"; repLeft "1492"; repStart "-3801"; chr8 rmsk exon 64814089 64814331 1063 - . gene_id "ERVLE_8q12.3f"; transcript_id "ERVLE_8q12.3f"; locus "ERVLE_8q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2082"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "1146"; repStart "-4278"; chr8 rmsk exon 64814561 64815461 3374 - . gene_id "ERVLE_8q12.3f"; transcript_id "ERVLE_8q12.3f"; locus "ERVLE_8q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2082"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "203"; repStart "-4531"; ### ERVLB4_8q12.3c ### chr8 rmsk gene 64898313 64903051 . + . gene_id "ERVLB4_8q12.3c"; transcript_id "ERVLB4_8q12.3c"; locus "ERVLB4_8q12.3c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0943"; model_cov "4144"; model_pct "72.5"; chr8 rmsk exon 64898313 64898813 1988 + . gene_id "ERVLB4_8q12.3c"; transcript_id "ERVLB4_8q12.3c"; locus "ERVLB4_8q12.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0943"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 64898814 64902532 10605 + . gene_id "ERVLB4_8q12.3c"; transcript_id "ERVLB4_8q12.3c"; locus "ERVLB4_8q12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0943"; repClass "LTR"; repEnd "3955"; repFamily "ERVL"; repLeft "-1759"; repStart "-42"; chr8 rmsk exon 64902529 64902674 631 + . gene_id "ERVLB4_8q12.3c"; transcript_id "ERVLB4_8q12.3c"; locus "ERVLB4_8q12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0943"; repClass "LTR"; repEnd "5698"; repFamily "ERVL"; repLeft "-16"; repStart "5551"; chr8 rmsk exon 64902675 64903051 1830 + . gene_id "ERVLB4_8q12.3c"; transcript_id "ERVLB4_8q12.3c"; locus "ERVLB4_8q12.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0943"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-111"; repStart "6"; ### ERVLB4_8q13.1 ### chr8 rmsk gene 65105514 65106245 . - . gene_id "ERVLB4_8q13.1"; transcript_id "ERVLB4_8q13.1"; locus "ERVLB4_8q13.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0944"; model_cov "764"; model_pct "13.4"; chr8 rmsk exon 65105514 65106245 4388 - . gene_id "ERVLB4_8q13.1"; transcript_id "ERVLB4_8q13.1"; locus "ERVLB4_8q13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0944"; repClass "LTR"; repEnd "3432"; repFamily "ERVL"; repLeft "2668"; repStart "-2282"; ### ERVLE_8q13.1a ### chr8 rmsk gene 65106247 65107211 . + . gene_id "ERVLE_8q13.1a"; transcript_id "ERVLE_8q13.1a"; locus "ERVLE_8q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2083"; model_cov "1001"; model_pct "17.7"; chr8 rmsk exon 65106247 65107211 4152 + . gene_id "ERVLE_8q13.1a"; transcript_id "ERVLE_8q13.1a"; locus "ERVLE_8q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2083"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "-7"; repStart "4659"; ### HERVIP10FH_8q13.1 ### chr8 rmsk gene 65126667 65133492 . - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0091"; model_cov "5746"; model_pct "100.0"; chr8 rmsk exon 65126667 65126742 479 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "76"; repFamily "ERV1"; repLeft "1"; repStart "-435"; chr8 rmsk exon 65126743 65129545 31245 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "2298"; repStart "0"; chr8 rmsk exon 65129845 65131334 31245 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "895"; repStart "-2805"; chr8 rmsk exon 65131323 65131739 3076 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "-221"; repFamily "ERV1"; repLeft "-643"; repStart "-5323"; chr8 rmsk exon 65131718 65133016 5626 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "-1516"; repFamily "ERV1"; repLeft "-2634"; repStart "-6618"; chr8 rmsk exon 65133017 65133492 3475 - . gene_id "HERVIP10FH_8q13.1"; transcript_id "HERVIP10FH_8q13.1"; locus "HERVIP10FH_8q13.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0091"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_8q13.1 ### chr8 rmsk gene 65863235 65870470 . + . gene_id "HERVH48_8q13.1"; transcript_id "HERVH48_8q13.1"; locus "HERVH48_8q13.1"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0029"; model_cov "6646"; model_pct "99.9"; chr8 rmsk exon 65863235 65863621 2701 + . gene_id "HERVH48_8q13.1"; transcript_id "HERVH48_8q13.1"; locus "HERVH48_8q13.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0029"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 65863622 65870079 41249 + . gene_id "HERVH48_8q13.1"; transcript_id "HERVH48_8q13.1"; locus "HERVH48_8q13.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0029"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr8 rmsk exon 65870083 65870470 2745 + . gene_id "HERVH48_8q13.1"; transcript_id "HERVH48_8q13.1"; locus "HERVH48_8q13.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0029"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_8q13.1a ### chr8 rmsk gene 65908704 65910139 . - . gene_id "ERV316A3_8q13.1a"; transcript_id "ERV316A3_8q13.1a"; locus "ERV316A3_8q13.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1557"; model_cov "1476"; model_pct "28.2"; chr8 rmsk exon 65908704 65910139 2271 - . gene_id "ERV316A3_8q13.1a"; transcript_id "ERV316A3_8q13.1a"; locus "ERV316A3_8q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1557"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "3640"; repStart "-110"; ### ERV316A3_8q13.1b ### chr8 rmsk gene 66220664 66224286 . - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1558"; model_cov "2632"; model_pct "50.4"; chr8 rmsk exon 66220664 66221127 1848 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 66221150 66221342 747 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "5001"; repStart "-21"; chr8 rmsk exon 66221358 66222579 3717 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "3632"; repStart "-312"; chr8 rmsk exon 66222680 66223157 1187 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "721"; repStart "-4007"; chr8 rmsk exon 66223205 66223847 1266 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "653"; repFamily "ERVL"; repLeft "5"; repStart "-4573"; chr8 rmsk exon 66223848 66224286 2009 - . gene_id "ERV316A3_8q13.1b"; transcript_id "ERV316A3_8q13.1b"; locus "ERV316A3_8q13.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1558"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### LTR46_8q13.1 ### chr8 rmsk gene 66326680 66327971 . + . gene_id "LTR46_8q13.1"; transcript_id "LTR46_8q13.1"; locus "LTR46_8q13.1"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0008"; model_cov "828"; model_pct "11.9"; chr8 rmsk exon 66326680 66327485 4796 + . gene_id "LTR46_8q13.1"; transcript_id "LTR46_8q13.1"; locus "LTR46_8q13.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0008"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "0"; repStart "6157"; chr8 rmsk exon 66327486 66327882 2739 + . gene_id "LTR46_8q13.1"; transcript_id "LTR46_8q13.1"; locus "LTR46_8q13.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0008"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "-53"; repStart "1"; chr8 rmsk exon 66327935 66327971 2739 + . gene_id "LTR46_8q13.1"; transcript_id "LTR46_8q13.1"; locus "LTR46_8q13.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0008"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-1"; repStart "408"; ### ERVLE_8q13.1b ### chr8 rmsk gene 66787449 66788616 . - . gene_id "ERVLE_8q13.1b"; transcript_id "ERVLE_8q13.1b"; locus "ERVLE_8q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2085"; model_cov "1297"; model_pct "22.9"; chr8 rmsk exon 66787449 66788616 2891 - . gene_id "ERVLE_8q13.1b"; transcript_id "ERVLE_8q13.1b"; locus "ERVLE_8q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2085"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "2926"; repStart "-1444"; ### ERVLE_8q13.1c ### chr8 rmsk gene 66788691 66789766 . - . gene_id "ERVLE_8q13.1c"; transcript_id "ERVLE_8q13.1c"; locus "ERVLE_8q13.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2086"; model_cov "1198"; model_pct "21.1"; chr8 rmsk exon 66788691 66789766 2891 - . gene_id "ERVLE_8q13.1c"; transcript_id "ERVLE_8q13.1c"; locus "ERVLE_8q13.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2086"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "3025"; repStart "-1444"; ### ERVLB4_8q13.2 ### chr8 rmsk gene 67693824 67696110 . + . gene_id "ERVLB4_8q13.2"; transcript_id "ERVLB4_8q13.2"; locus "ERVLB4_8q13.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0947"; model_cov "2274"; model_pct "39.8"; chr8 rmsk exon 67693824 67696110 14586 + . gene_id "ERVLB4_8q13.2"; transcript_id "ERVLB4_8q13.2"; locus "ERVLB4_8q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0947"; repClass "LTR"; repEnd "5028"; repFamily "ERVL"; repLeft "-686"; repStart "2754"; ### HERVFRD_8q13.2 ### chr8 rmsk gene 67702374 67709490 . + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0099"; model_cov "5063"; model_pct "70.3"; chr8 rmsk exon 67702374 67703079 4292 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0099"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; chr8 rmsk exon 67703081 67703932 5000 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "839"; repFamily "ERV1"; repLeft "-6366"; repStart "1"; chr8 rmsk exon 67703951 67704106 935 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "979"; repFamily "ERV1"; repLeft "-6226"; repStart "829"; chr8 rmsk exon 67704177 67704903 4453 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "1773"; repFamily "ERV1"; repLeft "-5432"; repStart "1050"; chr8 rmsk exon 67704894 67705328 2268 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "3729"; repFamily "ERV1"; repLeft "-3476"; repStart "3328"; chr8 rmsk exon 67705405 67707626 13887 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "5460"; repFamily "ERV1"; repLeft "-1745"; repStart "3391"; chr8 rmsk exon 67707930 67708510 13887 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "-1177"; repStart "5461"; chr8 rmsk exon 67708509 67708822 2084 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0099"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6882"; chr8 rmsk exon 67708823 67709490 3423 + . gene_id "HERVFRD_8q13.2"; transcript_id "HERVFRD_8q13.2"; locus "HERVFRD_8q13.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0099"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### MER4_8q13.2 ### chr8 rmsk gene 67842639 67846022 . + . gene_id "MER4_8q13.2"; transcript_id "MER4_8q13.2"; locus "MER4_8q13.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0426"; model_cov "2929"; model_pct "44.4"; chr8 rmsk exon 67842639 67842805 668 + . gene_id "MER4_8q13.2"; transcript_id "MER4_8q13.2"; locus "MER4_8q13.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0426"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "3515"; chr8 rmsk exon 67842800 67842923 598 + . gene_id "MER4_8q13.2"; transcript_id "MER4_8q13.2"; locus "MER4_8q13.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0426"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "-2635"; repStart "3837"; chr8 rmsk exon 67843104 67845577 12800 + . gene_id "MER4_8q13.2"; transcript_id "MER4_8q13.2"; locus "MER4_8q13.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0426"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3964"; chr8 rmsk exon 67845584 67846022 3071 + . gene_id "MER4_8q13.2"; transcript_id "MER4_8q13.2"; locus "MER4_8q13.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0426"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_8q13.2 ### chr8 rmsk gene 67921963 67923631 . + . gene_id "HERVW_8q13.2"; transcript_id "HERVW_8q13.2"; locus "HERVW_8q13.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0180"; model_cov "1329"; model_pct "15.4"; chr8 rmsk exon 67921963 67922996 8038 + . gene_id "HERVW_8q13.2"; transcript_id "HERVW_8q13.2"; locus "HERVW_8q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0180"; repClass "LTR"; repEnd "6024"; repFamily "ERV1"; repLeft "-2602"; repStart "4986"; chr8 rmsk exon 67923014 67923305 2271 + . gene_id "HERVW_8q13.2"; transcript_id "HERVW_8q13.2"; locus "HERVW_8q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0180"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr8 rmsk exon 67923306 67923631 2739 + . gene_id "HERVW_8q13.2"; transcript_id "HERVW_8q13.2"; locus "HERVW_8q13.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0180"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_8q13.2a ### chr8 rmsk gene 68149943 68151587 . - . gene_id "ERV316A3_8q13.2a"; transcript_id "ERV316A3_8q13.2a"; locus "ERV316A3_8q13.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1559"; model_cov "544"; model_pct "10.4"; chr8 rmsk exon 68149943 68150147 493 - . gene_id "ERV316A3_8q13.2a"; transcript_id "ERV316A3_8q13.2a"; locus "ERV316A3_8q13.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1559"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "24"; repStart "-218"; chr8 rmsk exon 68150220 68150692 1561 - . gene_id "ERV316A3_8q13.2a"; transcript_id "ERV316A3_8q13.2a"; locus "ERV316A3_8q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1559"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4711"; repStart "-50"; chr8 rmsk exon 68151511 68151587 277 - . gene_id "ERV316A3_8q13.2a"; transcript_id "ERV316A3_8q13.2a"; locus "ERV316A3_8q13.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1559"; repClass "LTR"; repEnd "4545"; repFamily "ERVL"; repLeft "4466"; repStart "-681"; ### ERVLE_8q13.2a ### chr8 rmsk gene 68369122 68372080 . - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2087"; model_cov "2206"; model_pct "38.9"; chr8 rmsk exon 68369122 68369597 888 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "3926"; repFamily "ERVL"; repLeft "3439"; repStart "-1741"; chr8 rmsk exon 68369629 68370067 1056 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "3321"; repFamily "ERVL"; repLeft "2825"; repStart "-2346"; chr8 rmsk exon 68370126 68370736 1663 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "1666"; repFamily "ERVL"; repLeft "1053"; repStart "-4001"; chr8 rmsk exon 68370979 68371267 677 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "771"; repFamily "ERVL"; repLeft "472"; repStart "-4896"; chr8 rmsk exon 68371487 68371593 314 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "306"; repStart "-5251"; chr8 rmsk exon 68371878 68372080 314 - . gene_id "ERVLE_8q13.2a"; transcript_id "ERVLE_8q13.2a"; locus "ERVLE_8q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2087"; repClass "LTR"; repEnd "305"; repFamily "ERVL"; repLeft "104"; repStart "-5362"; ### MER61_8q13.2a ### chr8 rmsk gene 68508799 68514352 . - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0231"; model_cov "5457"; model_pct "100.0"; chr8 rmsk exon 68508799 68509078 1671 - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0231"; repClass "LTR"; repEnd "294"; repFamily "ERV1"; repLeft "1"; repStart "-47"; chr8 rmsk exon 68509079 68511157 12019 - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0231"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3105"; repStart "0"; chr8 rmsk exon 68511710 68513341 6398 - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0231"; repClass "LTR"; repEnd "4182"; repFamily "ERV1"; repLeft "1610"; repStart "-1035"; chr8 rmsk exon 68513380 68514025 2783 - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0231"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "1"; repStart "-4443"; chr8 rmsk exon 68514026 68514352 1930 - . gene_id "MER61_8q13.2a"; transcript_id "MER61_8q13.2a"; locus "MER61_8q13.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0231"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_8q13.2b ### chr8 rmsk gene 68659522 68660736 . - . gene_id "MER61_8q13.2b"; transcript_id "MER61_8q13.2b"; locus "MER61_8q13.2b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0232"; model_cov "1215"; model_pct "23.3"; chr8 rmsk exon 68659522 68660018 3049 - . gene_id "MER61_8q13.2b"; transcript_id "MER61_8q13.2b"; locus "MER61_8q13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0232"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "2593"; repStart "-2125"; chr8 rmsk exon 68660015 68660736 3485 - . gene_id "MER61_8q13.2b"; transcript_id "MER61_8q13.2b"; locus "MER61_8q13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0232"; repClass "LTR"; repEnd "4783"; repFamily "ERV1"; repLeft "4067"; repStart "-434"; ### HML3_8q13.2 ### chr8 rmsk gene 68888678 68895627 . + . gene_id "HML3_8q13.2"; transcript_id "HML3_8q13.2"; locus "HML3_8q13.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0141"; model_cov "6003"; model_pct "99.7"; chr8 rmsk exon 68888678 68889171 3917 + . gene_id "HML3_8q13.2"; transcript_id "HML3_8q13.2"; locus "HML3_8q13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0141"; repClass "LTR"; repEnd "504"; repFamily "ERVK"; repLeft "-8"; repStart "1"; chr8 rmsk exon 68889173 68895123 36386 + . gene_id "HML3_8q13.2"; transcript_id "HML3_8q13.2"; locus "HML3_8q13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0141"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "18"; chr8 rmsk exon 68895128 68895627 3873 + . gene_id "HML3_8q13.2"; transcript_id "HML3_8q13.2"; locus "HML3_8q13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0141"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "5"; ### HERVH_8q13.2 ### chr8 rmsk gene 68972944 68978769 . + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0698"; model_cov "4928"; model_pct "63.9"; chr8 rmsk exon 68972944 68973429 3273 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 68973432 68976716 19983 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr8 rmsk exon 68976707 68977206 3310 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 68977209 68977844 3987 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 68977846 68977995 1012 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1965"; repStart "5600"; chr8 rmsk exon 68977998 68978314 2148 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7384"; chr8 rmsk exon 68978315 68978769 3319 + . gene_id "HERVH_8q13.2"; transcript_id "HERVH_8q13.2"; locus "HERVH_8q13.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0698"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_8q13.2b ### chr8 rmsk gene 69057748 69058693 . - . gene_id "ERV316A3_8q13.2b"; transcript_id "ERV316A3_8q13.2b"; locus "ERV316A3_8q13.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1560"; model_cov "566"; model_pct "10.8"; chr8 rmsk exon 69057748 69058299 1108 - . gene_id "ERV316A3_8q13.2b"; transcript_id "ERV316A3_8q13.2b"; locus "ERV316A3_8q13.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1560"; repClass "LTR"; repEnd "567"; repFamily "ERVL"; repLeft "1"; repStart "-4659"; chr8 rmsk exon 69058337 69058693 1362 - . gene_id "ERV316A3_8q13.2b"; transcript_id "ERV316A3_8q13.2b"; locus "ERV316A3_8q13.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1560"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-89"; ### ERV316A3_8q13.2c ### chr8 rmsk gene 69209152 69210935 . - . gene_id "ERV316A3_8q13.2c"; transcript_id "ERV316A3_8q13.2c"; locus "ERV316A3_8q13.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1561"; model_cov "1081"; model_pct "20.7"; chr8 rmsk exon 69209152 69209269 698 - . gene_id "ERV316A3_8q13.2c"; transcript_id "ERV316A3_8q13.2c"; locus "ERV316A3_8q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1561"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "4535"; repStart "-569"; chr8 rmsk exon 69209891 69210135 698 - . gene_id "ERV316A3_8q13.2c"; transcript_id "ERV316A3_8q13.2c"; locus "ERV316A3_8q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1561"; repClass "LTR"; repEnd "4534"; repFamily "ERVL"; repLeft "4321"; repStart "-692"; chr8 rmsk exon 69210157 69210608 1374 - . gene_id "ERV316A3_8q13.2c"; transcript_id "ERV316A3_8q13.2c"; locus "ERV316A3_8q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1561"; repClass "LTR"; repEnd "4224"; repFamily "ERVL"; repLeft "3759"; repStart "-1002"; chr8 rmsk exon 69210667 69210935 838 - . gene_id "ERV316A3_8q13.2c"; transcript_id "ERV316A3_8q13.2c"; locus "ERV316A3_8q13.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1561"; repClass "LTR"; repEnd "3118"; repFamily "ERVL"; repLeft "2837"; repStart "-2108"; ### ERVLE_8q13.2b ### chr8 rmsk gene 69425871 69426807 . - . gene_id "ERVLE_8q13.2b"; transcript_id "ERVLE_8q13.2b"; locus "ERVLE_8q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2088"; model_cov "1120"; model_pct "19.8"; chr8 rmsk exon 69425871 69426643 1262 - . gene_id "ERVLE_8q13.2b"; transcript_id "ERVLE_8q13.2b"; locus "ERVLE_8q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2088"; repClass "LTR"; repEnd "4467"; repFamily "ERVL"; repLeft "3540"; repStart "-1200"; chr8 rmsk exon 69426645 69426807 366 - . gene_id "ERVLE_8q13.2b"; transcript_id "ERVLE_8q13.2b"; locus "ERVLE_8q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2088"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "3372"; repStart "-2102"; ### ERV316A3_8q13.3a ### chr8 rmsk gene 70099953 70104701 . - . gene_id "ERV316A3_8q13.3a"; transcript_id "ERV316A3_8q13.3a"; locus "ERV316A3_8q13.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1562"; model_cov "3814"; model_pct "73.0"; chr8 rmsk exon 70099953 70102915 9296 - . gene_id "ERV316A3_8q13.3a"; transcript_id "ERV316A3_8q13.3a"; locus "ERV316A3_8q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1562"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "2130"; repStart "-19"; chr8 rmsk exon 70102930 70103447 1675 - . gene_id "ERV316A3_8q13.3a"; transcript_id "ERV316A3_8q13.3a"; locus "ERV316A3_8q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1562"; repClass "LTR"; repEnd "2409"; repFamily "ERVL"; repLeft "1852"; repStart "-2817"; chr8 rmsk exon 70104306 70104482 520 - . gene_id "ERV316A3_8q13.3a"; transcript_id "ERV316A3_8q13.3a"; locus "ERV316A3_8q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1562"; repClass "LTR"; repEnd "642"; repFamily "ERVL"; repLeft "462"; repStart "-4584"; chr8 rmsk exon 70104549 70104701 526 - . gene_id "ERV316A3_8q13.3a"; transcript_id "ERV316A3_8q13.3a"; locus "ERV316A3_8q13.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1562"; repClass "LTR"; repEnd "309"; repFamily "ERVL"; repLeft "150"; repStart "-153"; ### ERVLB4_8q13.3 ### chr8 rmsk gene 70415974 70418441 . - . gene_id "ERVLB4_8q13.3"; transcript_id "ERVLB4_8q13.3"; locus "ERVLB4_8q13.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0948"; model_cov "1280"; model_pct "22.4"; chr8 rmsk exon 70415974 70416368 1534 - . gene_id "ERVLB4_8q13.3"; transcript_id "ERVLB4_8q13.3"; locus "ERVLB4_8q13.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0948"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 70416371 70416583 6025 - . gene_id "ERVLB4_8q13.3"; transcript_id "ERVLB4_8q13.3"; locus "ERVLB4_8q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0948"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "5502"; repStart "-3"; chr8 rmsk exon 70416918 70417126 6025 - . gene_id "ERVLB4_8q13.3"; transcript_id "ERVLB4_8q13.3"; locus "ERVLB4_8q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0948"; repClass "LTR"; repEnd "5501"; repFamily "ERVL"; repLeft "5286"; repStart "-213"; chr8 rmsk exon 70417588 70418441 6025 - . gene_id "ERVLB4_8q13.3"; transcript_id "ERVLB4_8q13.3"; locus "ERVLB4_8q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0948"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "4429"; repStart "-429"; ### HUERSP1_8q13.3 ### chr8 rmsk gene 70727698 70732687 . - . gene_id "HUERSP1_8q13.3"; transcript_id "HUERSP1_8q13.3"; locus "HUERSP1_8q13.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0100"; model_cov "4715"; model_pct "75.3"; chr8 rmsk exon 70727698 70728236 3590 - . gene_id "HUERSP1_8q13.3"; transcript_id "HUERSP1_8q13.3"; locus "HUERSP1_8q13.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0100"; repClass "LTR"; repEnd "526"; repFamily "ERV1"; repLeft "1"; repStart "-165"; chr8 rmsk exon 70728237 70730387 9182 - . gene_id "HUERSP1_8q13.3"; transcript_id "HUERSP1_8q13.3"; locus "HUERSP1_8q13.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0100"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "3614"; repStart "0"; chr8 rmsk exon 70730390 70732544 12201 - . gene_id "HUERSP1_8q13.3"; transcript_id "HUERSP1_8q13.3"; locus "HUERSP1_8q13.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0100"; repClass "LTR"; repEnd "2067"; repFamily "ERV1"; repLeft "1"; repStart "-4196"; chr8 rmsk exon 70732545 70732687 836 - . gene_id "HUERSP1_8q13.3"; transcript_id "HUERSP1_8q13.3"; locus "HUERSP1_8q13.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0100"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "547"; repStart "0"; ### HERVH_8q13.3a ### chr8 rmsk gene 71664665 71670448 . + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0699"; model_cov "5272"; model_pct "68.4"; chr8 rmsk exon 71664665 71665020 1747 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chr8 rmsk exon 71665029 71667597 11997 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr8 rmsk exon 71667598 71667715 3829 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "3466"; repFamily "ERV1"; repLeft "-4247"; repStart "3357"; chr8 rmsk exon 71668028 71669649 6603 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "6430"; repFamily "ERV1"; repLeft "-1283"; repStart "4526"; chr8 rmsk exon 71669654 71670086 2681 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr8 rmsk exon 71670087 71670448 2196 + . gene_id "HERVH_8q13.3a"; transcript_id "HERVH_8q13.3a"; locus "HERVH_8q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0699"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q13.3b ### chr8 rmsk gene 71674937 71680660 . + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0700"; model_cov "5059"; model_pct "65.6"; chr8 rmsk exon 71674937 71675387 3501 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 71675390 71678457 18597 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr8 rmsk exon 71678448 71678952 3177 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 71678955 71679616 4141 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 71679618 71679835 1162 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 71679836 71680213 2335 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 71680214 71680660 3248 + . gene_id "HERVH_8q13.3b"; transcript_id "HERVH_8q13.3b"; locus "HERVH_8q13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0700"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_8q13.3b ### chr8 rmsk gene 71953866 71955118 . + . gene_id "ERV316A3_8q13.3b"; transcript_id "ERV316A3_8q13.3b"; locus "ERV316A3_8q13.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1565"; model_cov "577"; model_pct "11.0"; chr8 rmsk exon 71953866 71954259 1234 + . gene_id "ERV316A3_8q13.3b"; transcript_id "ERV316A3_8q13.3b"; locus "ERV316A3_8q13.3b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1565"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-15"; repStart "1"; chr8 rmsk exon 71954437 71954786 742 + . gene_id "ERV316A3_8q13.3b"; transcript_id "ERV316A3_8q13.3b"; locus "ERV316A3_8q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1565"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-4677"; repStart "170"; chr8 rmsk exon 71954919 71955118 742 + . gene_id "ERV316A3_8q13.3b"; transcript_id "ERV316A3_8q13.3b"; locus "ERV316A3_8q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1565"; repClass "LTR"; repEnd "748"; repFamily "ERVL"; repLeft "-4478"; repStart "550"; ### PABLB_8q21.11 ### chr8 rmsk gene 72096360 72104776 . - . gene_id "PABLB_8q21.11"; transcript_id "PABLB_8q21.11"; locus "PABLB_8q21.11"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0057"; model_cov "7121"; model_pct "100.0"; chr8 rmsk exon 72096360 72097024 4639 - . gene_id "PABLB_8q21.11"; transcript_id "PABLB_8q21.11"; locus "PABLB_8q21.11"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0057"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 72097025 72104103 51531 - . gene_id "PABLB_8q21.11"; transcript_id "PABLB_8q21.11"; locus "PABLB_8q21.11"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0057"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 72104104 72104776 4515 - . gene_id "PABLB_8q21.11"; transcript_id "PABLB_8q21.11"; locus "PABLB_8q21.11"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0057"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFH21_8q21.11 ### chr8 rmsk gene 72133051 72134652 . - . gene_id "HERVFH21_8q21.11"; transcript_id "HERVFH21_8q21.11"; locus "HERVFH21_8q21.11"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0021"; model_cov "1213"; model_pct "18.6"; chr8 rmsk exon 72133051 72134074 6377 - . gene_id "HERVFH21_8q21.11"; transcript_id "HERVFH21_8q21.11"; locus "HERVFH21_8q21.11"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0021"; repClass "LTR"; repEnd "3656"; repFamily "ERV1"; repLeft "2594"; repStart "-2873"; chr8 rmsk exon 72134071 72134230 706 - . gene_id "HERVFH21_8q21.11"; transcript_id "HERVFH21_8q21.11"; locus "HERVFH21_8q21.11"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0021"; repClass "LTR"; repEnd "152"; repFamily "ERV1"; repLeft "1"; repStart "-6377"; chr8 rmsk exon 72134231 72134652 963 - . gene_id "HERVFH21_8q21.11"; transcript_id "HERVFH21_8q21.11"; locus "HERVFH21_8q21.11"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0021"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_8q21.11 ### chr8 rmsk gene 72177226 72179808 . + . gene_id "HERVL_8q21.11"; transcript_id "HERVL_8q21.11"; locus "HERVL_8q21.11"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0757"; model_cov "1347"; model_pct "23.8"; chr8 rmsk exon 72177226 72177708 1097 + . gene_id "HERVL_8q21.11"; transcript_id "HERVL_8q21.11"; locus "HERVL_8q21.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0757"; repClass "LTR"; repEnd "4549"; repFamily "ERVL"; repLeft "-1105"; repStart "4027"; chr8 rmsk exon 72177811 72177954 473 + . gene_id "HERVL_8q21.11"; transcript_id "HERVL_8q21.11"; locus "HERVL_8q21.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0757"; repClass "LTR"; repEnd "4765"; repFamily "ERVL"; repLeft "-889"; repStart "4613"; chr8 rmsk exon 72177965 72178395 1043 + . gene_id "HERVL_8q21.11"; transcript_id "HERVL_8q21.11"; locus "HERVL_8q21.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0757"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-387"; repStart "4822"; chr8 rmsk exon 72179569 72179808 464 + . gene_id "HERVL_8q21.11"; transcript_id "HERVL_8q21.11"; locus "HERVL_8q21.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0757"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "-13"; repStart "5413"; ### HUERSP3_8q21.11a ### chr8 rmsk gene 72264478 72268779 . - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0108"; model_cov "3220"; model_pct "36.1"; chr8 rmsk exon 72264478 72265131 3369 - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0108"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 72265137 72265388 1373 - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0108"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "8659"; repStart "-3"; chr8 rmsk exon 72265808 72267566 11285 - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0108"; repClass "LTR"; repEnd "7006"; repFamily "ERV1"; repLeft "5245"; repStart "-1913"; chr8 rmsk exon 72267566 72267950 2407 - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0108"; repClass "LTR"; repEnd "2390"; repFamily "ERV1"; repLeft "2012"; repStart "-6529"; chr8 rmsk exon 72267977 72268779 4184 - . gene_id "HUERSP3_8q21.11a"; transcript_id "HUERSP3_8q21.11a"; locus "HUERSP3_8q21.11a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0108"; repClass "LTR"; repEnd "1652"; repFamily "ERV1"; repLeft "828"; repStart "-7267"; ### HUERSP3_8q21.11b ### chr8 rmsk gene 72280121 72283984 . + . gene_id "HUERSP3_8q21.11b"; transcript_id "HUERSP3_8q21.11b"; locus "HUERSP3_8q21.11b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0109"; model_cov "2966"; model_pct "33.3"; chr8 rmsk exon 72280121 72282877 15769 + . gene_id "HUERSP3_8q21.11b"; transcript_id "HUERSP3_8q21.11b"; locus "HUERSP3_8q21.11b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0109"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "4155"; chr8 rmsk exon 72283131 72283340 1214 + . gene_id "HUERSP3_8q21.11b"; transcript_id "HUERSP3_8q21.11b"; locus "HUERSP3_8q21.11b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0109"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "-4"; repStart "8706"; chr8 rmsk exon 72283346 72283984 2744 + . gene_id "HUERSP3_8q21.11b"; transcript_id "HUERSP3_8q21.11b"; locus "HUERSP3_8q21.11b"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0109"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_8q21.11a ### chr8 rmsk gene 72314397 72316534 . + . gene_id "ERVLB4_8q21.11a"; transcript_id "ERVLB4_8q21.11a"; locus "ERVLB4_8q21.11a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0949"; model_cov "1188"; model_pct "20.8"; chr8 rmsk exon 72314397 72314892 856 + . gene_id "ERVLB4_8q21.11a"; transcript_id "ERVLB4_8q21.11a"; locus "ERVLB4_8q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0949"; repClass "LTR"; repEnd "4831"; repFamily "ERVL"; repLeft "-883"; repStart "4278"; chr8 rmsk exon 72314910 72315382 937 + . gene_id "ERVLB4_8q21.11a"; transcript_id "ERVLB4_8q21.11a"; locus "ERVLB4_8q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0949"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "-352"; repStart "4882"; chr8 rmsk exon 72316373 72316534 343 + . gene_id "ERVLB4_8q21.11a"; transcript_id "ERVLB4_8q21.11a"; locus "ERVLB4_8q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0949"; repClass "LTR"; repEnd "5684"; repFamily "ERVL"; repLeft "-30"; repStart "5529"; ### HERV9_8q21.11a ### chr8 rmsk gene 72387852 72395572 . + . gene_id "HERV9_8q21.11a"; transcript_id "HERV9_8q21.11a"; locus "HERV9_8q21.11a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0107"; model_cov "6504"; model_pct "77.1"; chr8 rmsk exon 72387852 72388497 3381 + . gene_id "HERV9_8q21.11a"; transcript_id "HERV9_8q21.11a"; locus "HERV9_8q21.11a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0107"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 72388556 72393977 33887 + . gene_id "HERV9_8q21.11a"; transcript_id "HERV9_8q21.11a"; locus "HERV9_8q21.11a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0107"; repClass "LTR"; repEnd "5585"; repFamily "ERV1"; repLeft "-2851"; repStart "29"; chr8 rmsk exon 72393976 72394920 7140 + . gene_id "HERV9_8q21.11a"; transcript_id "HERV9_8q21.11a"; locus "HERV9_8q21.11a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0107"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7488"; chr8 rmsk exon 72394921 72395572 3441 + . gene_id "HERV9_8q21.11a"; transcript_id "HERV9_8q21.11a"; locus "HERV9_8q21.11a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0107"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "-234"; repStart "-306"; ### ERV316A3_8q21.11a ### chr8 rmsk gene 72471308 72472247 . + . gene_id "ERV316A3_8q21.11a"; transcript_id "ERV316A3_8q21.11a"; locus "ERV316A3_8q21.11a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1566"; model_cov "889"; model_pct "17.0"; chr8 rmsk exon 72471308 72471438 291 + . gene_id "ERV316A3_8q21.11a"; transcript_id "ERV316A3_8q21.11a"; locus "ERV316A3_8q21.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1566"; repClass "LTR"; repEnd "2292"; repFamily "ERVL"; repLeft "-2934"; repStart "2156"; chr8 rmsk exon 72471534 72472247 1000 + . gene_id "ERV316A3_8q21.11a"; transcript_id "ERV316A3_8q21.11a"; locus "ERV316A3_8q21.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1566"; repClass "LTR"; repEnd "2811"; repFamily "ERVL"; repLeft "-2415"; repStart "2058"; ### ERV316A3_8q21.11b ### chr8 rmsk gene 72489080 72490702 . + . gene_id "ERV316A3_8q21.11b"; transcript_id "ERV316A3_8q21.11b"; locus "ERV316A3_8q21.11b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1567"; model_cov "1351"; model_pct "25.9"; chr8 rmsk exon 72489080 72489581 925 + . gene_id "ERV316A3_8q21.11b"; transcript_id "ERV316A3_8q21.11b"; locus "ERV316A3_8q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1567"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "-1885"; repStart "2810"; chr8 rmsk exon 72489581 72489609 1332 + . gene_id "ERV316A3_8q21.11b"; transcript_id "ERV316A3_8q21.11b"; locus "ERV316A3_8q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1567"; repClass "LTR"; repEnd "3679"; repFamily "ERVL"; repLeft "-1547"; repStart "3651"; chr8 rmsk exon 72489957 72490702 1332 + . gene_id "ERV316A3_8q21.11b"; transcript_id "ERV316A3_8q21.11b"; locus "ERV316A3_8q21.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1567"; repClass "LTR"; repEnd "4472"; repFamily "ERVL"; repLeft "-754"; repStart "3680"; ### ERV316A3_8q21.11c ### chr8 rmsk gene 73146806 73148004 . - . gene_id "ERV316A3_8q21.11c"; transcript_id "ERV316A3_8q21.11c"; locus "ERV316A3_8q21.11c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1569"; model_cov "661"; model_pct "12.6"; chr8 rmsk exon 73146806 73146896 833 - . gene_id "ERV316A3_8q21.11c"; transcript_id "ERV316A3_8q21.11c"; locus "ERV316A3_8q21.11c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1569"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "362"; repStart "-6"; chr8 rmsk exon 73147194 73147342 833 - . gene_id "ERV316A3_8q21.11c"; transcript_id "ERV316A3_8q21.11c"; locus "ERV316A3_8q21.11c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1569"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "197"; repStart "-102"; chr8 rmsk exon 73147361 73148004 2333 - . gene_id "ERV316A3_8q21.11c"; transcript_id "ERV316A3_8q21.11c"; locus "ERV316A3_8q21.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1569"; repClass "LTR"; repEnd "4847"; repFamily "ERVL"; repLeft "4186"; repStart "-379"; ### HERVL32_8q21.11 ### chr8 rmsk gene 73754403 73754816 . + . gene_id "HERVL32_8q21.11"; transcript_id "HERVL32_8q21.11"; locus "HERVL32_8q21.11"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0034"; model_cov "410"; model_pct "12.0"; chr8 rmsk exon 73754403 73754816 1670 + . gene_id "HERVL32_8q21.11"; transcript_id "HERVL32_8q21.11"; locus "HERVL32_8q21.11"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0034"; repClass "LTR"; repEnd "848"; repFamily "ERVL"; repLeft "-2570"; repStart "438"; ### MER101_8q21.11a ### chr8 rmsk gene 73901408 73904641 . - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0232"; model_cov "2898"; model_pct "43.7"; chr8 rmsk exon 73901408 73901658 2632 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0232"; repClass "LTR"; repEnd "308"; repFamily "ERV1"; repLeft "105"; repStart "-137"; chr8 rmsk exon 73901969 73902086 2632 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0232"; repClass "LTR"; repEnd "104"; repFamily "ERV1"; repLeft "1"; repStart "-341"; chr8 rmsk exon 73902087 73902551 2325 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0232"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "6168"; repStart "-1"; chr8 rmsk exon 73902522 73902594 1690 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0232"; repClass "LTR"; repEnd "5860"; repFamily "ERV1"; repLeft "5795"; repStart "-779"; chr8 rmsk exon 73902909 73903148 1690 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0232"; repClass "LTR"; repEnd "5794"; repFamily "ERV1"; repLeft "5541"; repStart "-845"; chr8 rmsk exon 73903471 73904641 3616 - . gene_id "MER101_8q21.11a"; transcript_id "MER101_8q21.11a"; locus "MER101_8q21.11a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0232"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "2492"; repStart "-2037"; ### HERV9_8q21.11b ### chr8 rmsk gene 73906025 73914040 . + . gene_id "HERV9_8q21.11b"; transcript_id "HERV9_8q21.11b"; locus "HERV9_8q21.11b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0108"; model_cov "7108"; model_pct "84.3"; chr8 rmsk exon 73906025 73906523 3740 + . gene_id "HERV9_8q21.11b"; transcript_id "HERV9_8q21.11b"; locus "HERV9_8q21.11b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0108"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 73906562 73912253 43685 + . gene_id "HERV9_8q21.11b"; transcript_id "HERV9_8q21.11b"; locus "HERV9_8q21.11b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0108"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "-2613"; repStart "68"; chr8 rmsk exon 73912248 73913587 11084 + . gene_id "HERV9_8q21.11b"; transcript_id "HERV9_8q21.11b"; locus "HERV9_8q21.11b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0108"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7083"; chr8 rmsk exon 73913588 73914040 3325 + . gene_id "HERV9_8q21.11b"; transcript_id "HERV9_8q21.11b"; locus "HERV9_8q21.11b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0108"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_8q21.11b ### chr8 rmsk gene 73915110 73917852 . - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0233"; model_cov "1746"; model_pct "26.3"; chr8 rmsk exon 73915110 73915562 3089 - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0233"; repClass "LTR"; repEnd "3569"; repFamily "ERV1"; repLeft "3064"; repStart "-3070"; chr8 rmsk exon 73915875 73915990 3089 - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0233"; repClass "LTR"; repEnd "3063"; repFamily "ERV1"; repLeft "2957"; repStart "-3576"; chr8 rmsk exon 73916301 73916513 3089 - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0233"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "2751"; repStart "-3683"; chr8 rmsk exon 73916988 73917099 587 - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0233"; repClass "LTR"; repEnd "2644"; repFamily "ERV1"; repLeft "2533"; repStart "-3995"; chr8 rmsk exon 73917412 73917852 1339 - . gene_id "MER101_8q21.11b"; transcript_id "MER101_8q21.11b"; locus "MER101_8q21.11b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0233"; repClass "LTR"; repEnd "2543"; repFamily "ERV1"; repLeft "1724"; repStart "-4096"; ### MER4B_8q21.11 ### chr8 rmsk gene 74031305 74036087 . + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0242"; model_cov "2928"; model_pct "43.3"; chr8 rmsk exon 74031305 74031346 719 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "3006"; repFamily "ERV1"; repLeft "-3752"; repStart "2970"; chr8 rmsk exon 74031650 74031740 719 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "3094"; repFamily "ERV1"; repLeft "-3664"; repStart "3007"; chr8 rmsk exon 74031728 74031842 5005 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "3536"; repFamily "ERV1"; repLeft "-3222"; repStart "3421"; chr8 rmsk exon 74032155 74032264 5005 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "3604"; repFamily "ERV1"; repLeft "-3154"; repStart "3537"; chr8 rmsk exon 74032702 74033484 5005 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "4481"; repFamily "ERV1"; repLeft "-2277"; repStart "3605"; chr8 rmsk exon 74033483 74034090 8444 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "5605"; repFamily "ERV1"; repLeft "-1153"; repStart "5010"; chr8 rmsk exon 74034387 74035468 8444 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "5606"; chr8 rmsk exon 74035469 74036087 4116 + . gene_id "MER4B_8q21.11"; transcript_id "MER4B_8q21.11"; locus "MER4B_8q21.11"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0242"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8q21.11 ### chr8 rmsk gene 74113253 74115437 . - . gene_id "ERVLE_8q21.11"; transcript_id "ERVLE_8q21.11"; locus "ERVLE_8q21.11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2090"; model_cov "1990"; model_pct "35.1"; chr8 rmsk exon 74113253 74113977 2792 - . gene_id "ERVLE_8q21.11"; transcript_id "ERVLE_8q21.11"; locus "ERVLE_8q21.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2090"; repClass "LTR"; repEnd "5160"; repFamily "ERVL"; repLeft "4418"; repStart "-507"; chr8 rmsk exon 74114274 74114946 2792 - . gene_id "ERVLE_8q21.11"; transcript_id "ERVLE_8q21.11"; locus "ERVLE_8q21.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2090"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "3521"; repStart "-1250"; chr8 rmsk exon 74114938 74115100 344 - . gene_id "ERVLE_8q21.11"; transcript_id "ERVLE_8q21.11"; locus "ERVLE_8q21.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2090"; repClass "LTR"; repEnd "3636"; repFamily "ERVL"; repLeft "3429"; repStart "-2031"; chr8 rmsk exon 74115297 74115437 534 - . gene_id "ERVLE_8q21.11"; transcript_id "ERVLE_8q21.11"; locus "ERVLE_8q21.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2090"; repClass "LTR"; repEnd "3335"; repFamily "ERVL"; repLeft "3190"; repStart "-2332"; ### ERV316A3_8q21.11d ### chr8 rmsk gene 74328352 74331316 . + . gene_id "ERV316A3_8q21.11d"; transcript_id "ERV316A3_8q21.11d"; locus "ERV316A3_8q21.11d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1572"; model_cov "2494"; model_pct "47.7"; chr8 rmsk exon 74328352 74328482 457 + . gene_id "ERV316A3_8q21.11d"; transcript_id "ERV316A3_8q21.11d"; locus "ERV316A3_8q21.11d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1572"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "-343"; repStart "5"; chr8 rmsk exon 74328487 74330893 4137 + . gene_id "ERV316A3_8q21.11d"; transcript_id "ERV316A3_8q21.11d"; locus "ERV316A3_8q21.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1572"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "2727"; chr8 rmsk exon 74330898 74331316 1545 + . gene_id "ERV316A3_8q21.11d"; transcript_id "ERV316A3_8q21.11d"; locus "ERV316A3_8q21.11d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1572"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_8q21.11b ### chr8 rmsk gene 74378555 74380154 . + . gene_id "ERVLB4_8q21.11b"; transcript_id "ERVLB4_8q21.11b"; locus "ERVLB4_8q21.11b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0950"; model_cov "1140"; model_pct "20.0"; chr8 rmsk exon 74378555 74378699 283 + . gene_id "ERVLB4_8q21.11b"; transcript_id "ERVLB4_8q21.11b"; locus "ERVLB4_8q21.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0950"; repClass "LTR"; repEnd "2185"; repFamily "ERVL"; repLeft "-3529"; repStart "2048"; chr8 rmsk exon 74379207 74380154 1602 + . gene_id "ERVLB4_8q21.11b"; transcript_id "ERVLB4_8q21.11b"; locus "ERVLB4_8q21.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0950"; repClass "LTR"; repEnd "3159"; repFamily "ERVL"; repLeft "-2555"; repStart "2156"; ### ERV316A3_8q21.11e ### chr8 rmsk gene 74500019 74502128 . + . gene_id "ERV316A3_8q21.11e"; transcript_id "ERV316A3_8q21.11e"; locus "ERV316A3_8q21.11e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1573"; model_cov "1963"; model_pct "37.6"; chr8 rmsk exon 74500019 74500249 2015 + . gene_id "ERV316A3_8q21.11e"; transcript_id "ERV316A3_8q21.11e"; locus "ERV316A3_8q21.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1573"; repClass "LTR"; repEnd "2168"; repFamily "ERVL"; repLeft "-3058"; repStart "1950"; chr8 rmsk exon 74500447 74501053 2015 + . gene_id "ERV316A3_8q21.11e"; transcript_id "ERV316A3_8q21.11e"; locus "ERV316A3_8q21.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1573"; repClass "LTR"; repEnd "2803"; repFamily "ERVL"; repLeft "-2423"; repStart "2169"; chr8 rmsk exon 74501049 74501365 402 + . gene_id "ERV316A3_8q21.11e"; transcript_id "ERV316A3_8q21.11e"; locus "ERV316A3_8q21.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1573"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "-1904"; repStart "2995"; chr8 rmsk exon 74501391 74502128 2165 + . gene_id "ERV316A3_8q21.11e"; transcript_id "ERV316A3_8q21.11e"; locus "ERV316A3_8q21.11e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1573"; repClass "LTR"; repEnd "4450"; repFamily "ERVL"; repLeft "-776"; repStart "3666"; ### ERVLE_8q21.13a ### chr8 rmsk gene 74701888 74702996 . + . gene_id "ERVLE_8q21.13a"; transcript_id "ERVLE_8q21.13a"; locus "ERVLE_8q21.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2091"; model_cov "568"; model_pct "10.0"; chr8 rmsk exon 74701888 74702182 307 + . gene_id "ERVLE_8q21.13a"; transcript_id "ERVLE_8q21.13a"; locus "ERVLE_8q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2091"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-5239"; repStart "124"; chr8 rmsk exon 74702754 74702996 641 + . gene_id "ERVLE_8q21.13a"; transcript_id "ERVLE_8q21.13a"; locus "ERVLE_8q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2091"; repClass "LTR"; repEnd "1324"; repFamily "ERVL"; repLeft "-4343"; repStart "1060"; ### ERV316A3_8q21.13a ### chr8 rmsk gene 74730859 74731831 . + . gene_id "ERV316A3_8q21.13a"; transcript_id "ERV316A3_8q21.13a"; locus "ERV316A3_8q21.13a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1574"; model_cov "983"; model_pct "18.8"; chr8 rmsk exon 74730859 74731831 2924 + . gene_id "ERV316A3_8q21.13a"; transcript_id "ERV316A3_8q21.13a"; locus "ERV316A3_8q21.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1574"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "-627"; repStart "3616"; ### HERVFRD_8q21.13a ### chr8 rmsk gene 74899607 74901527 . + . gene_id "HERVFRD_8q21.13a"; transcript_id "HERVFRD_8q21.13a"; locus "HERVFRD_8q21.13a"; category "internal"; intModel "MER50-int"; locid "MER50-int_0100"; model_cov "1574"; model_pct "21.8"; chr8 rmsk exon 74899607 74900509 4112 + . gene_id "HERVFRD_8q21.13a"; transcript_id "HERVFRD_8q21.13a"; locus "HERVFRD_8q21.13a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0100"; repClass "LTR"; repEnd "1858"; repFamily "ERV1"; repLeft "-5347"; repStart "847"; chr8 rmsk exon 74900500 74901527 3184 + . gene_id "HERVFRD_8q21.13a"; transcript_id "HERVFRD_8q21.13a"; locus "HERVFRD_8q21.13a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0100"; repClass "LTR"; repEnd "6391"; repFamily "ERV1"; repLeft "-814"; repStart "5828"; ### MER41_8q21.13 ### chr8 rmsk gene 74901524 74904636 . + . gene_id "MER41_8q21.13"; transcript_id "MER41_8q21.13"; locus "MER41_8q21.13"; category "internal"; intModel "MER41-int"; locid "MER41-int_0296"; model_cov "4022"; model_pct "67.6"; chr8 rmsk exon 74901524 74904636 17133 + . gene_id "MER41_8q21.13"; transcript_id "MER41_8q21.13"; locus "MER41_8q21.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0296"; repClass "LTR"; repEnd "3682"; repFamily "ERV1"; repLeft "-2264"; repStart "-340"; ### HML3_8q21.13 ### chr8 rmsk gene 75044052 75050107 . + . gene_id "HML3_8q21.13"; transcript_id "HML3_8q21.13"; locus "HML3_8q21.13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0142"; model_cov "5076"; model_pct "84.3"; chr8 rmsk exon 75044052 75044566 3658 + . gene_id "HML3_8q21.13"; transcript_id "HML3_8q21.13"; locus "HML3_8q21.13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0142"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "2"; chr8 rmsk exon 75044567 75045249 5060 + . gene_id "HML3_8q21.13"; transcript_id "HML3_8q21.13"; locus "HML3_8q21.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0142"; repClass "LTR"; repEnd "693"; repFamily "ERVK"; repLeft "-5328"; repStart "1"; chr8 rmsk exon 75045235 75049598 34927 + . gene_id "HML3_8q21.13"; transcript_id "HML3_8q21.13"; locus "HML3_8q21.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0142"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1637"; chr8 rmsk exon 75049599 75050107 4031 + . gene_id "HML3_8q21.13"; transcript_id "HML3_8q21.13"; locus "HML3_8q21.13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0142"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVP71A_8q21.13 ### chr8 rmsk gene 75360991 75362488 . + . gene_id "HERVP71A_8q21.13"; transcript_id "HERVP71A_8q21.13"; locus "HERVP71A_8q21.13"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0042"; model_cov "1052"; model_pct "13.9"; chr8 rmsk exon 75360991 75361452 3348 + . gene_id "HERVP71A_8q21.13"; transcript_id "HERVP71A_8q21.13"; locus "HERVP71A_8q21.13"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0042"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 75361453 75362488 7189 + . gene_id "HERVP71A_8q21.13"; transcript_id "HERVP71A_8q21.13"; locus "HERVP71A_8q21.13"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0042"; repClass "LTR"; repEnd "1053"; repFamily "ERV1"; repLeft "-6537"; repStart "1"; ### ERV316A3_8q21.13b ### chr8 rmsk gene 75393597 75395854 . - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1575"; model_cov "1607"; model_pct "30.8"; chr8 rmsk exon 75393597 75394063 981 - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1575"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr8 rmsk exon 75394065 75394275 727 - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1575"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4997"; repStart "-1"; chr8 rmsk exon 75394284 75394705 1167 - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1575"; repClass "LTR"; repEnd "4503"; repFamily "ERVL"; repLeft "3927"; repStart "-723"; chr8 rmsk exon 75395016 75395113 331 - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1575"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "4318"; repStart "-812"; chr8 rmsk exon 75395137 75395854 1443 - . gene_id "ERV316A3_8q21.13b"; transcript_id "ERV316A3_8q21.13b"; locus "ERV316A3_8q21.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1575"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "76"; repStart "-4443"; ### PABLA_8q21.13a ### chr8 rmsk gene 75619237 75619968 . - . gene_id "PABLA_8q21.13a"; transcript_id "PABLA_8q21.13a"; locus "PABLA_8q21.13a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0086"; model_cov "752"; model_pct "15.0"; chr8 rmsk exon 75619237 75619968 4992 - . gene_id "PABLA_8q21.13a"; transcript_id "PABLA_8q21.13a"; locus "PABLA_8q21.13a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0086"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4261"; repStart "-2"; ### PABLA_8q21.13b ### chr8 rmsk gene 75627653 75631209 . - . gene_id "PABLA_8q21.13b"; transcript_id "PABLA_8q21.13b"; locus "PABLA_8q21.13b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0087"; model_cov "3686"; model_pct "73.5"; chr8 rmsk exon 75627653 75629774 12152 - . gene_id "PABLA_8q21.13b"; transcript_id "PABLA_8q21.13b"; locus "PABLA_8q21.13b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0087"; repClass "LTR"; repEnd "4384"; repFamily "ERV1"; repLeft "2284"; repStart "-631"; chr8 rmsk exon 75629767 75631209 5207 - . gene_id "PABLA_8q21.13b"; transcript_id "PABLA_8q21.13b"; locus "PABLA_8q21.13b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0087"; repClass "LTR"; repEnd "658"; repFamily "ERV1"; repLeft "-928"; repStart "-4357"; ### ERVLE_8q21.13b ### chr8 rmsk gene 75705996 75708227 . + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2093"; model_cov "2094"; model_pct "37.0"; chr8 rmsk exon 75705996 75706499 1066 + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2093"; repClass "LTR"; repEnd "2373"; repFamily "ERVL"; repLeft "-3294"; repStart "1889"; chr8 rmsk exon 75706557 75707706 2391 + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2093"; repClass "LTR"; repEnd "3719"; repFamily "ERVL"; repLeft "-1948"; repStart "2571"; chr8 rmsk exon 75707710 75707824 450 + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2093"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "-960"; repStart "4590"; chr8 rmsk exon 75707844 75708007 537 + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2093"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "-712"; repStart "4787"; chr8 rmsk exon 75708058 75708227 302 + . gene_id "ERVLE_8q21.13b"; transcript_id "ERVLE_8q21.13b"; locus "ERVLE_8q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2093"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "-374"; repStart "5116"; ### HERVL_8q21.13a ### chr8 rmsk gene 76039697 76040852 . - . gene_id "HERVL_8q21.13a"; transcript_id "HERVL_8q21.13a"; locus "HERVL_8q21.13a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0759"; model_cov "671"; model_pct "11.9"; chr8 rmsk exon 76039697 76040372 5293 - . gene_id "HERVL_8q21.13a"; transcript_id "HERVL_8q21.13a"; locus "HERVL_8q21.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0759"; repClass "LTR"; repEnd "672"; repFamily "ERVL"; repLeft "1"; repStart "-4982"; chr8 rmsk exon 76040373 76040414 2985 - . gene_id "HERVL_8q21.13a"; transcript_id "HERVL_8q21.13a"; locus "HERVL_8q21.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0759"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "389"; repStart "0"; chr8 rmsk exon 76040476 76040852 2985 - . gene_id "HERVL_8q21.13a"; transcript_id "HERVL_8q21.13a"; locus "HERVL_8q21.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0759"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "6"; repStart "-56"; ### HERVL_8q21.13b ### chr8 rmsk gene 76103643 76104972 . - . gene_id "HERVL_8q21.13b"; transcript_id "HERVL_8q21.13b"; locus "HERVL_8q21.13b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0760"; model_cov "877"; model_pct "15.5"; chr8 rmsk exon 76103643 76103678 3034 - . gene_id "HERVL_8q21.13b"; transcript_id "HERVL_8q21.13b"; locus "HERVL_8q21.13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0760"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr8 rmsk exon 76103724 76104109 3034 - . gene_id "HERVL_8q21.13b"; transcript_id "HERVL_8q21.13b"; locus "HERVL_8q21.13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0760"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "11"; repStart "-40"; chr8 rmsk exon 76104114 76104972 6322 - . gene_id "HERVL_8q21.13b"; transcript_id "HERVL_8q21.13b"; locus "HERVL_8q21.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0760"; repClass "LTR"; repEnd "5649"; repFamily "ERVL"; repLeft "4772"; repStart "-5"; ### ERV316A3_8q21.13c ### chr8 rmsk gene 76505099 76507665 . - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1577"; model_cov "2185"; model_pct "41.8"; chr8 rmsk exon 76505099 76505134 591 - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1577"; repClass "LTR"; repEnd "2824"; repFamily "ERVL"; repLeft "2787"; repStart "-2402"; chr8 rmsk exon 76505521 76505755 658 - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1577"; repClass "LTR"; repEnd "2786"; repFamily "ERVL"; repLeft "2394"; repStart "-2440"; chr8 rmsk exon 76505897 76506759 658 - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1577"; repClass "LTR"; repEnd "2163"; repFamily "ERVL"; repLeft "1150"; repStart "-3063"; chr8 rmsk exon 76506801 76507436 577 - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1577"; repClass "LTR"; repEnd "758"; repFamily "ERVL"; repLeft "15"; repStart "-4468"; chr8 rmsk exon 76507439 76507665 896 - . gene_id "ERV316A3_8q21.13c"; transcript_id "ERV316A3_8q21.13c"; locus "ERV316A3_8q21.13c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1577"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "221"; repStart "0"; ### ERVLB4_8q21.13a ### chr8 rmsk gene 76878756 76880723 . - . gene_id "ERVLB4_8q21.13a"; transcript_id "ERVLB4_8q21.13a"; locus "ERVLB4_8q21.13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0952"; model_cov "1356"; model_pct "23.7"; chr8 rmsk exon 76878756 76879087 1839 - . gene_id "ERVLB4_8q21.13a"; transcript_id "ERVLB4_8q21.13a"; locus "ERVLB4_8q21.13a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0952"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "1"; repStart "-59"; chr8 rmsk exon 76879088 76879910 6443 - . gene_id "ERVLB4_8q21.13a"; transcript_id "ERVLB4_8q21.13a"; locus "ERVLB4_8q21.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0952"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "4840"; repStart "-1"; chr8 rmsk exon 76880254 76880723 6443 - . gene_id "ERVLB4_8q21.13a"; transcript_id "ERVLB4_8q21.13a"; locus "ERVLB4_8q21.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0952"; repClass "LTR"; repEnd "4839"; repFamily "ERVL"; repLeft "4356"; repStart "-875"; ### ERV316A3_8q21.13d ### chr8 rmsk gene 77019439 77021098 . + . gene_id "ERV316A3_8q21.13d"; transcript_id "ERV316A3_8q21.13d"; locus "ERV316A3_8q21.13d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1578"; model_cov "837"; model_pct "16.0"; chr8 rmsk exon 77019439 77019860 830 + . gene_id "ERV316A3_8q21.13d"; transcript_id "ERV316A3_8q21.13d"; locus "ERV316A3_8q21.13d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1578"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr8 rmsk exon 77019983 77020268 1046 + . gene_id "ERV316A3_8q21.13d"; transcript_id "ERV316A3_8q21.13d"; locus "ERV316A3_8q21.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1578"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-4842"; repStart "95"; chr8 rmsk exon 77020560 77020932 1046 + . gene_id "ERV316A3_8q21.13d"; transcript_id "ERV316A3_8q21.13d"; locus "ERV316A3_8q21.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1578"; repClass "LTR"; repEnd "762"; repFamily "ERVL"; repLeft "-4464"; repStart "385"; chr8 rmsk exon 77020930 77021098 503 + . gene_id "ERV316A3_8q21.13d"; transcript_id "ERV316A3_8q21.13d"; locus "ERV316A3_8q21.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1578"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "-3915"; repStart "1140"; ### ERV316A3_8q21.13e ### chr8 rmsk gene 77026137 77029024 . + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1579"; model_cov "1958"; model_pct "37.5"; chr8 rmsk exon 77026137 77026757 2339 + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1579"; repClass "LTR"; repEnd "1977"; repFamily "ERVL"; repLeft "-3249"; repStart "1297"; chr8 rmsk exon 77027062 77027907 2608 + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1579"; repClass "LTR"; repEnd "2847"; repFamily "ERVL"; repLeft "-2379"; repStart "1976"; chr8 rmsk exon 77028068 77028354 1479 + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1579"; repClass "LTR"; repEnd "3858"; repFamily "ERVL"; repLeft "-1368"; repStart "3569"; chr8 rmsk exon 77028657 77028779 1479 + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1579"; repClass "LTR"; repEnd "3977"; repFamily "ERVL"; repLeft "-1249"; repStart "3859"; chr8 rmsk exon 77028780 77029024 630 + . gene_id "ERV316A3_8q21.13e"; transcript_id "ERV316A3_8q21.13e"; locus "ERV316A3_8q21.13e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1579"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "207"; ### ERVLE_8q21.13c ### chr8 rmsk gene 77219959 77221523 . + . gene_id "ERVLE_8q21.13c"; transcript_id "ERVLE_8q21.13c"; locus "ERVLE_8q21.13c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2095"; model_cov "991"; model_pct "17.5"; chr8 rmsk exon 77219959 77220912 2999 + . gene_id "ERVLE_8q21.13c"; transcript_id "ERVLE_8q21.13c"; locus "ERVLE_8q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2095"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "4674"; chr8 rmsk exon 77220915 77221523 1051 + . gene_id "ERVLE_8q21.13c"; transcript_id "ERVLE_8q21.13c"; locus "ERVLE_8q21.13c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2095"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### ERV316A3_8q21.13f ### chr8 rmsk gene 77815914 77819269 . + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1580"; model_cov "2444"; model_pct "46.8"; chr8 rmsk exon 77815914 77815937 776 + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1580"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-4712"; repStart "491"; chr8 rmsk exon 77816249 77816636 776 + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1580"; repClass "LTR"; repEnd "890"; repFamily "ERVL"; repLeft "-4336"; repStart "515"; chr8 rmsk exon 77816653 77817954 3346 + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1580"; repClass "LTR"; repEnd "2049"; repFamily "ERVL"; repLeft "-3177"; repStart "714"; chr8 rmsk exon 77818522 77818885 3346 + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1580"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "-2803"; repStart "2050"; chr8 rmsk exon 77818911 77819269 775 + . gene_id "ERV316A3_8q21.13f"; transcript_id "ERV316A3_8q21.13f"; locus "ERV316A3_8q21.13f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1580"; repClass "LTR"; repEnd "4625"; repFamily "ERVL"; repLeft "-601"; repStart "4287"; ### ERVLB4_8q21.13b ### chr8 rmsk gene 77819272 77824831 . - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0954"; model_cov "4680"; model_pct "81.9"; chr8 rmsk exon 77819272 77819317 229 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "367"; repStart "-2"; chr8 rmsk exon 77819353 77819488 471 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "244"; repFamily "ERVL"; repLeft "94"; repStart "-170"; chr8 rmsk exon 77819531 77820185 1932 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5050"; repStart "-2"; chr8 rmsk exon 77820192 77824068 21252 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "4022"; repFamily "ERVL"; repLeft "90"; repStart "-1692"; chr8 rmsk exon 77824383 77824501 21252 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "3"; repStart "-5625"; chr8 rmsk exon 77824508 77824831 799 - . gene_id "ERVLB4_8q21.13b"; transcript_id "ERVLB4_8q21.13b"; locus "ERVLB4_8q21.13b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_0954"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "147"; repStart "-7"; ### ERVLE_8q21.13d ### chr8 rmsk gene 77856773 77859723 . + . gene_id "ERVLE_8q21.13d"; transcript_id "ERVLE_8q21.13d"; locus "ERVLE_8q21.13d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2096"; model_cov "2481"; model_pct "43.8"; chr8 rmsk exon 77856773 77857115 1457 + . gene_id "ERVLE_8q21.13d"; transcript_id "ERVLE_8q21.13d"; locus "ERVLE_8q21.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2096"; repClass "LTR"; repEnd "3469"; repFamily "ERVL"; repLeft "-2198"; repStart "3120"; chr8 rmsk exon 77857155 77859168 6536 + . gene_id "ERVLE_8q21.13d"; transcript_id "ERVLE_8q21.13d"; locus "ERVLE_8q21.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2096"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "3535"; chr8 rmsk exon 77859169 77859253 363 + . gene_id "ERVLE_8q21.13d"; transcript_id "ERVLE_8q21.13d"; locus "ERVLE_8q21.13d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2096"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "-577"; repStart "1"; chr8 rmsk exon 77859519 77859723 227 + . gene_id "ERVLE_8q21.13d"; transcript_id "ERVLE_8q21.13d"; locus "ERVLE_8q21.13d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2096"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "453"; ### ERVLE_8q21.13e ### chr8 rmsk gene 77889415 77891155 . - . gene_id "ERVLE_8q21.13e"; transcript_id "ERVLE_8q21.13e"; locus "ERVLE_8q21.13e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2097"; model_cov "1239"; model_pct "21.9"; chr8 rmsk exon 77889415 77889614 541 - . gene_id "ERVLE_8q21.13e"; transcript_id "ERVLE_8q21.13e"; locus "ERVLE_8q21.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2097"; repClass "LTR"; repEnd "5307"; repFamily "ERVL"; repLeft "5099"; repStart "-360"; chr8 rmsk exon 77889748 77889808 341 - . gene_id "ERVLE_8q21.13e"; transcript_id "ERVLE_8q21.13e"; locus "ERVLE_8q21.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2097"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "2064"; repStart "-3543"; chr8 rmsk exon 77890207 77891155 1276 - . gene_id "ERVLE_8q21.13e"; transcript_id "ERVLE_8q21.13e"; locus "ERVLE_8q21.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2097"; repClass "LTR"; repEnd "1453"; repFamily "ERVL"; repLeft "482"; repStart "-4214"; ### ERV316A3_8q21.13g ### chr8 rmsk gene 78135208 78138453 . - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1581"; model_cov "1708"; model_pct "32.7"; chr8 rmsk exon 78135208 78135518 876 - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1581"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "109"; repStart "-17"; chr8 rmsk exon 78135575 78135792 593 - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1581"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5013"; repStart "0"; chr8 rmsk exon 78136595 78137015 1150 - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1581"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4043"; repStart "-751"; chr8 rmsk exon 78137012 78138004 1248 - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1581"; repClass "LTR"; repEnd "1079"; repFamily "ERVL"; repLeft "16"; repStart "-4147"; chr8 rmsk exon 78138016 78138453 992 - . gene_id "ERV316A3_8q21.13g"; transcript_id "ERV316A3_8q21.13g"; locus "ERV316A3_8q21.13g"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1581"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERV9_8q21.13 ### chr8 rmsk gene 78147694 78151561 . + . gene_id "HERV9_8q21.13"; transcript_id "HERV9_8q21.13"; locus "HERV9_8q21.13"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0109"; model_cov "3821"; model_pct "45.3"; chr8 rmsk exon 78147694 78148246 3438 + . gene_id "HERV9_8q21.13"; transcript_id "HERV9_8q21.13"; locus "HERV9_8q21.13"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0109"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "-236"; repStart "1"; chr8 rmsk exon 78148250 78151561 12087 + . gene_id "HERV9_8q21.13"; transcript_id "HERV9_8q21.13"; locus "HERV9_8q21.13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0109"; repClass "LTR"; repEnd "5167"; repFamily "ERV1"; repLeft "-3269"; repStart "1346"; ### HERVL_8q21.13c ### chr8 rmsk gene 78155679 78162987 . + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0761"; model_cov "5119"; model_pct "90.5"; chr8 rmsk exon 78155679 78156085 2981 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr8 rmsk exon 78156110 78159313 23621 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "3236"; repFamily "ERVL"; repLeft "-2418"; repStart "3"; chr8 rmsk exon 78159312 78160341 8011 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "4816"; repFamily "ERVL"; repLeft "-838"; repStart "3785"; chr8 rmsk exon 78161676 78162506 5896 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4799"; chr8 rmsk exon 78162507 78162899 2909 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr8 rmsk exon 78162948 78162987 259 + . gene_id "HERVL_8q21.13c"; transcript_id "HERVL_8q21.13c"; locus "HERVL_8q21.13c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0761"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "364"; ### HERV4_8q21.13a ### chr8 rmsk gene 78175519 78180840 . - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0071"; model_cov "3824"; model_pct "58.5"; chr8 rmsk exon 78175519 78175692 476 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "316"; repFamily "ERV1"; repLeft "-26"; repStart "-166"; chr8 rmsk exon 78175717 78176803 1550 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "6332"; repFamily "ERV1"; repLeft "4366"; repStart "-207"; chr8 rmsk exon 78177044 78177155 425 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "2536"; repFamily "ERV1"; repLeft "2433"; repStart "-4003"; chr8 rmsk exon 78177365 78177643 1657 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "2456"; repFamily "ERV1"; repLeft "2162"; repStart "-4083"; chr8 rmsk exon 78178383 78178696 3616 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "2041"; repFamily "ERV1"; repLeft "1728"; repStart "-4498"; chr8 rmsk exon 78178933 78179225 3616 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "1727"; repFamily "ERV1"; repLeft "1449"; repStart "-4812"; chr8 rmsk exon 78179257 78179767 1491 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "1153"; repFamily "ERV1"; repLeft "556"; repStart "-5386"; chr8 rmsk exon 78180104 78180376 1609 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "226"; repStart "-6040"; chr8 rmsk exon 78180497 78180840 1422 - . gene_id "HERV4_8q21.13a"; transcript_id "HERV4_8q21.13a"; locus "HERV4_8q21.13a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0071"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "257"; repStart "-16"; ### HERVL_8q21.13d ### chr8 rmsk gene 78183721 78187892 . - . gene_id "HERVL_8q21.13d"; transcript_id "HERVL_8q21.13d"; locus "HERVL_8q21.13d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0762"; model_cov "3784"; model_pct "66.9"; chr8 rmsk exon 78183721 78187450 28213 - . gene_id "HERVL_8q21.13d"; transcript_id "HERVL_8q21.13d"; locus "HERVL_8q21.13d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0762"; repClass "LTR"; repEnd "3785"; repFamily "ERVL"; repLeft "1"; repStart "-1869"; chr8 rmsk exon 78187451 78187892 3113 - . gene_id "HERVL_8q21.13d"; transcript_id "HERVL_8q21.13d"; locus "HERVL_8q21.13d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0762"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_8q21.13f ### chr8 rmsk gene 78277124 78277721 . + . gene_id "ERVLE_8q21.13f"; transcript_id "ERVLE_8q21.13f"; locus "ERVLE_8q21.13f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2099"; model_cov "657"; model_pct "11.6"; chr8 rmsk exon 78277124 78277721 1013 + . gene_id "ERVLE_8q21.13f"; transcript_id "ERVLE_8q21.13f"; locus "ERVLE_8q21.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2099"; repClass "LTR"; repEnd "3176"; repFamily "ERVL"; repLeft "-2491"; repStart "2519"; ### HML1_8q21.13 ### chr8 rmsk gene 78645811 78649373 . + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0060"; model_cov "1358"; model_pct "22.3"; chr8 rmsk exon 78645811 78645904 253 + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0060"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "-5604"; repStart "399"; chr8 rmsk exon 78646319 78646531 337 + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0060"; repClass "LTR"; repEnd "1116"; repFamily "ERVK"; repLeft "-4980"; repStart "898"; chr8 rmsk exon 78647049 78647599 1219 + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0060"; repClass "LTR"; repEnd "3091"; repFamily "ERVK"; repLeft "-3005"; repStart "2393"; chr8 rmsk exon 78647787 78647873 252 + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0060"; repClass "LTR"; repEnd "3300"; repFamily "ERVK"; repLeft "-2796"; repStart "3214"; chr8 rmsk exon 78648937 78649373 439 + . gene_id "HML1_8q21.13"; transcript_id "HML1_8q21.13"; locus "HML1_8q21.13"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0060"; repClass "LTR"; repEnd "3835"; repFamily "ERVK"; repLeft "-2261"; repStart "3572"; ### HERVK14C_8q21.13 ### chr8 rmsk gene 78652076 78654676 . + . gene_id "HERVK14C_8q21.13"; transcript_id "HERVK14C_8q21.13"; locus "HERVK14C_8q21.13"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0017"; model_cov "2023"; model_pct "27.2"; chr8 rmsk exon 78652076 78652317 1999 + . gene_id "HERVK14C_8q21.13"; transcript_id "HERVK14C_8q21.13"; locus "HERVK14C_8q21.13"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0017"; repClass "LTR"; repEnd "1577"; repFamily "ERVK"; repLeft "-5857"; repStart "1336"; chr8 rmsk exon 78652303 78654089 15130 + . gene_id "HERVK14C_8q21.13"; transcript_id "HERVK14C_8q21.13"; locus "HERVK14C_8q21.13"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0017"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "5652"; chr8 rmsk exon 78654090 78654676 4675 + . gene_id "HERVK14C_8q21.13"; transcript_id "HERVK14C_8q21.13"; locus "HERVK14C_8q21.13"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0017"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_8q21.13g ### chr8 rmsk gene 78862743 78864084 . + . gene_id "ERVLE_8q21.13g"; transcript_id "ERVLE_8q21.13g"; locus "ERVLE_8q21.13g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2101"; model_cov "1270"; model_pct "22.4"; chr8 rmsk exon 78862743 78863127 731 + . gene_id "ERVLE_8q21.13g"; transcript_id "ERVLE_8q21.13g"; locus "ERVLE_8q21.13g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2101"; repClass "LTR"; repEnd "664"; repFamily "ERVL"; repLeft "-5003"; repStart "278"; chr8 rmsk exon 78863237 78863638 1039 + . gene_id "ERVLE_8q21.13g"; transcript_id "ERVLE_8q21.13g"; locus "ERVLE_8q21.13g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2101"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "-4282"; repStart "969"; chr8 rmsk exon 78863651 78864084 533 + . gene_id "ERVLE_8q21.13g"; transcript_id "ERVLE_8q21.13g"; locus "ERVLE_8q21.13g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2101"; repClass "LTR"; repEnd "1911"; repFamily "ERVL"; repLeft "-3756"; repStart "1443"; ### ERVLB4_8q21.13c ### chr8 rmsk gene 78937023 78941378 . - . gene_id "ERVLB4_8q21.13c"; transcript_id "ERVLB4_8q21.13c"; locus "ERVLB4_8q21.13c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0955"; model_cov "2003"; model_pct "35.1"; chr8 rmsk exon 78937023 78937404 950 - . gene_id "ERVLB4_8q21.13c"; transcript_id "ERVLB4_8q21.13c"; locus "ERVLB4_8q21.13c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0955"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "2"; repStart "-13"; chr8 rmsk exon 78937408 78937510 335 - . gene_id "ERVLB4_8q21.13c"; transcript_id "ERVLB4_8q21.13c"; locus "ERVLB4_8q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0955"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5602"; repStart "0"; chr8 rmsk exon 78937867 78938270 1516 - . gene_id "ERVLB4_8q21.13c"; transcript_id "ERVLB4_8q21.13c"; locus "ERVLB4_8q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0955"; repClass "LTR"; repEnd "5598"; repFamily "ERVL"; repLeft "5038"; repStart "-116"; chr8 rmsk exon 78940134 78941378 6560 - . gene_id "ERVLB4_8q21.13c"; transcript_id "ERVLB4_8q21.13c"; locus "ERVLB4_8q21.13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0955"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "3765"; repStart "-618"; ### ERVLB4_8q21.13d ### chr8 rmsk gene 78941451 78945827 . - . gene_id "ERVLB4_8q21.13d"; transcript_id "ERVLB4_8q21.13d"; locus "ERVLB4_8q21.13d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0956"; model_cov "3609"; model_pct "63.2"; chr8 rmsk exon 78941451 78941902 6560 - . gene_id "ERVLB4_8q21.13d"; transcript_id "ERVLB4_8q21.13d"; locus "ERVLB4_8q21.13d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0956"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "4612"; repStart "-618"; chr8 rmsk exon 78942421 78944158 8193 - . gene_id "ERVLB4_8q21.13d"; transcript_id "ERVLB4_8q21.13d"; locus "ERVLB4_8q21.13d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0956"; repClass "LTR"; repEnd "3273"; repFamily "ERVL"; repLeft "1498"; repStart "-2441"; chr8 rmsk exon 78944167 78945419 4147 - . gene_id "ERVLB4_8q21.13d"; transcript_id "ERVLB4_8q21.13d"; locus "ERVLB4_8q21.13d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0956"; repClass "LTR"; repEnd "1419"; repFamily "ERVL"; repLeft "69"; repStart "-4295"; chr8 rmsk exon 78945443 78945827 965 - . gene_id "ERVLB4_8q21.13d"; transcript_id "ERVLB4_8q21.13d"; locus "ERVLB4_8q21.13d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0956"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_8q21.13h ### chr8 rmsk gene 79046861 79047901 . - . gene_id "ERVLE_8q21.13h"; transcript_id "ERVLE_8q21.13h"; locus "ERVLE_8q21.13h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2103"; model_cov "1119"; model_pct "19.7"; chr8 rmsk exon 79046861 79047901 3857 - . gene_id "ERVLE_8q21.13h"; transcript_id "ERVLE_8q21.13h"; locus "ERVLE_8q21.13h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2103"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "4547"; repStart "-1"; ### ERVLE_8q21.13i ### chr8 rmsk gene 79054942 79057468 . - . gene_id "ERVLE_8q21.13i"; transcript_id "ERVLE_8q21.13i"; locus "ERVLE_8q21.13i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2104"; model_cov "2157"; model_pct "38.1"; chr8 rmsk exon 79054942 79055667 658 - . gene_id "ERVLE_8q21.13i"; transcript_id "ERVLE_8q21.13i"; locus "ERVLE_8q21.13i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2104"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "4339"; repStart "-606"; chr8 rmsk exon 79055724 79055793 333 - . gene_id "ERVLE_8q21.13i"; transcript_id "ERVLE_8q21.13i"; locus "ERVLE_8q21.13i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2104"; repClass "LTR"; repEnd "4452"; repFamily "ERVL"; repLeft "4382"; repStart "-1215"; chr8 rmsk exon 79055881 79055999 359 - . gene_id "ERVLE_8q21.13i"; transcript_id "ERVLE_8q21.13i"; locus "ERVLE_8q21.13i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2104"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "4106"; repStart "-1444"; chr8 rmsk exon 79056251 79057468 1665 - . gene_id "ERVLE_8q21.13i"; transcript_id "ERVLE_8q21.13i"; locus "ERVLE_8q21.13i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2104"; repClass "LTR"; repEnd "4101"; repFamily "ERVL"; repLeft "2853"; repStart "-1566"; ### ERVLE_8q21.13j ### chr8 rmsk gene 79185286 79187682 . - . gene_id "ERVLE_8q21.13j"; transcript_id "ERVLE_8q21.13j"; locus "ERVLE_8q21.13j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2105"; model_cov "2272"; model_pct "40.1"; chr8 rmsk exon 79185286 79186010 1336 - . gene_id "ERVLE_8q21.13j"; transcript_id "ERVLE_8q21.13j"; locus "ERVLE_8q21.13j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2105"; repClass "LTR"; repEnd "5100"; repFamily "ERVL"; repLeft "4366"; repStart "-567"; chr8 rmsk exon 79186022 79186641 791 - . gene_id "ERVLE_8q21.13j"; transcript_id "ERVLE_8q21.13j"; locus "ERVLE_8q21.13j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2105"; repClass "LTR"; repEnd "4228"; repFamily "ERVL"; repLeft "3675"; repStart "-1439"; chr8 rmsk exon 79186641 79187682 989 - . gene_id "ERVLE_8q21.13j"; transcript_id "ERVLE_8q21.13j"; locus "ERVLE_8q21.13j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2105"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "2971"; repStart "-1711"; ### ERVLB4_8q21.13e ### chr8 rmsk gene 79246158 79251002 . + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0957"; model_cov "3755"; model_pct "65.7"; chr8 rmsk exon 79246158 79246280 410 + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0957"; repClass "LTR"; repEnd "195"; repFamily "ERVL"; repLeft "-468"; repStart "68"; chr8 rmsk exon 79246692 79250018 10410 + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0957"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "-594"; repStart "1648"; chr8 rmsk exon 79250030 79250192 437 + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0957"; repClass "LTR"; repEnd "5516"; repFamily "ERVL"; repLeft "-198"; repStart "5356"; chr8 rmsk exon 79250227 79250354 591 + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0957"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5590"; chr8 rmsk exon 79250392 79251002 1418 + . gene_id "ERVLB4_8q21.13e"; transcript_id "ERVLB4_8q21.13e"; locus "ERVLB4_8q21.13e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_0957"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "47"; ### HERVFRD_8q21.13b ### chr8 rmsk gene 79285089 79289259 . - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0101"; model_cov "3298"; model_pct "45.8"; chr8 rmsk exon 79285089 79285369 1671 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0101"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "433"; repStart "-23"; chr8 rmsk exon 79285372 79285590 1190 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0101"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "1"; repStart "-502"; chr8 rmsk exon 79285594 79285899 2310 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0101"; repClass "LTR"; repEnd "7193"; repFamily "ERV1"; repLeft "6882"; repStart "-12"; chr8 rmsk exon 79285978 79286338 2323 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0101"; repClass "LTR"; repEnd "6315"; repFamily "ERV1"; repLeft "5956"; repStart "-890"; chr8 rmsk exon 79286337 79286977 3061 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0101"; repClass "LTR"; repEnd "5994"; repFamily "ERV1"; repLeft "5109"; repStart "-1211"; chr8 rmsk exon 79286969 79287647 4007 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0101"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "1152"; repStart "-5356"; chr8 rmsk exon 79287656 79288698 6311 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0101"; repClass "LTR"; repEnd "1047"; repFamily "ERV1"; repLeft "1"; repStart "-6158"; chr8 rmsk exon 79288699 79289015 1417 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0101"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "432"; repStart "-23"; chr8 rmsk exon 79289017 79289259 1429 - . gene_id "HERVFRD_8q21.13b"; transcript_id "HERVFRD_8q21.13b"; locus "HERVFRD_8q21.13b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0101"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "1"; repStart "-504"; ### HERVH_8q21.13a ### chr8 rmsk gene 79386106 79391685 . - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0701"; model_cov "4911"; model_pct "63.7"; chr8 rmsk exon 79386106 79386539 2614 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "23"; repStart "-2"; chr8 rmsk exon 79386540 79386918 2486 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 79386917 79387137 1340 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr8 rmsk exon 79387135 79387798 4253 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 79387801 79388291 3346 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr8 rmsk exon 79388291 79388440 964 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 79388420 79391250 15029 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 79391251 79391685 2659 - . gene_id "HERVH_8q21.13a"; transcript_id "HERVH_8q21.13a"; locus "HERVH_8q21.13a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0701"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_8q21.13 ### chr8 rmsk gene 80739716 80743192 . + . gene_id "HERVW_8q21.13"; transcript_id "HERVW_8q21.13"; locus "HERVW_8q21.13"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0182"; model_cov "3124"; model_pct "36.2"; chr8 rmsk exon 80739716 80742545 22639 + . gene_id "HERVW_8q21.13"; transcript_id "HERVW_8q21.13"; locus "HERVW_8q21.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0182"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3192"; chr8 rmsk exon 80742570 80742863 2193 + . gene_id "HERVW_8q21.13"; transcript_id "HERVW_8q21.13"; locus "HERVW_8q21.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0182"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8329"; chr8 rmsk exon 80742865 80743192 2510 + . gene_id "HERVW_8q21.13"; transcript_id "HERVW_8q21.13"; locus "HERVW_8q21.13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0182"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "2"; ### HERVH48_8q21.13 ### chr8 rmsk gene 80909710 80911751 . - . gene_id "HERVH48_8q21.13"; transcript_id "HERVH48_8q21.13"; locus "HERVH48_8q21.13"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0030"; model_cov "1257"; model_pct "18.9"; chr8 rmsk exon 80909710 80910100 2851 - . gene_id "HERVH48_8q21.13"; transcript_id "HERVH48_8q21.13"; locus "HERVH48_8q21.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0030"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 80910101 80911354 8955 - . gene_id "HERVH48_8q21.13"; transcript_id "HERVH48_8q21.13"; locus "HERVH48_8q21.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0030"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "5397"; repStart "0"; chr8 rmsk exon 80911365 80911751 2768 - . gene_id "HERVH48_8q21.13"; transcript_id "HERVH48_8q21.13"; locus "HERVH48_8q21.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0030"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HERVL_8q21.13e ### chr8 rmsk gene 81242463 81243446 . - . gene_id "HERVL_8q21.13e"; transcript_id "HERVL_8q21.13e"; locus "HERVL_8q21.13e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0763"; model_cov "565"; model_pct "10.0"; chr8 rmsk exon 81242463 81243028 4469 - . gene_id "HERVL_8q21.13e"; transcript_id "HERVL_8q21.13e"; locus "HERVL_8q21.13e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0763"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "1"; repStart "-5088"; chr8 rmsk exon 81243029 81243446 2953 - . gene_id "HERVL_8q21.13e"; transcript_id "HERVL_8q21.13e"; locus "HERVL_8q21.13e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0763"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL32_8q21.13 ### chr8 rmsk gene 81419908 81421776 . + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0035"; model_cov "1335"; model_pct "39.1"; chr8 rmsk exon 81419908 81419968 290 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "3"; chr8 rmsk exon 81419973 81420039 344 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "340"; repFamily "ERVL"; repLeft "-117"; repStart "274"; chr8 rmsk exon 81420046 81420202 935 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-11"; repStart "287"; chr8 rmsk exon 81420214 81421410 3155 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "1233"; repFamily "ERVL"; repLeft "-2185"; repStart "1"; chr8 rmsk exon 81421421 81421521 341 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "0"; repStart "3315"; chr8 rmsk exon 81421528 81421591 313 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "5"; chr8 rmsk exon 81421593 81421776 1212 + . gene_id "HERVL32_8q21.13"; transcript_id "HERVL32_8q21.13"; locus "HERVL32_8q21.13"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0035"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "271"; ### ERVLE_8q21.13k ### chr8 rmsk gene 81519560 81520598 . + . gene_id "ERVLE_8q21.13k"; transcript_id "ERVLE_8q21.13k"; locus "ERVLE_8q21.13k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2109"; model_cov "1175"; model_pct "20.7"; chr8 rmsk exon 81519560 81520313 937 + . gene_id "ERVLE_8q21.13k"; transcript_id "ERVLE_8q21.13k"; locus "ERVLE_8q21.13k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2109"; repClass "LTR"; repEnd "1087"; repFamily "ERVL"; repLeft "-4580"; repStart "231"; chr8 rmsk exon 81520314 81520598 495 + . gene_id "ERVLE_8q21.13k"; transcript_id "ERVLE_8q21.13k"; locus "ERVLE_8q21.13k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2109"; repClass "LTR"; repEnd "1370"; repFamily "ERVL"; repLeft "-4297"; repStart "1051"; ### ERV316A3_8q21.13h ### chr8 rmsk gene 81533083 81536266 . - . gene_id "ERV316A3_8q21.13h"; transcript_id "ERV316A3_8q21.13h"; locus "ERV316A3_8q21.13h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1584"; model_cov "2894"; model_pct "55.4"; chr8 rmsk exon 81533083 81534670 6773 - . gene_id "ERV316A3_8q21.13h"; transcript_id "ERV316A3_8q21.13h"; locus "ERV316A3_8q21.13h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1584"; repClass "LTR"; repEnd "4075"; repFamily "ERVL"; repLeft "2459"; repStart "-1151"; chr8 rmsk exon 81534956 81536266 6773 - . gene_id "ERV316A3_8q21.13h"; transcript_id "ERV316A3_8q21.13h"; locus "ERV316A3_8q21.13h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1584"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "1180"; repStart "-2768"; ### HERV4_8q21.13b ### chr8 rmsk gene 81843896 81849755 . + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0073"; model_cov "4947"; model_pct "75.7"; chr8 rmsk exon 81843896 81844359 1396 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr8 rmsk exon 81844360 81844713 4211 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "389"; repFamily "ERV1"; repLeft "-6150"; repStart "1"; chr8 rmsk exon 81844781 81845176 4211 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "827"; repFamily "ERV1"; repLeft "-5712"; repStart "390"; chr8 rmsk exon 81845173 81845708 28622 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3587"; repStart "2414"; chr8 rmsk exon 81846063 81849623 28622 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "-2"; repStart "2953"; chr8 rmsk exon 81849626 81849755 397 + . gene_id "HERV4_8q21.13b"; transcript_id "HERV4_8q21.13b"; locus "HERV4_8q21.13b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0073"; repClass "LTR"; repEnd "184"; repFamily "ERV1"; repLeft "-450"; repStart "1"; ### ERV316A3_8q21.13i ### chr8 rmsk gene 81896635 81897855 . - . gene_id "ERV316A3_8q21.13i"; transcript_id "ERV316A3_8q21.13i"; locus "ERV316A3_8q21.13i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1585"; model_cov "871"; model_pct "16.7"; chr8 rmsk exon 81896635 81897100 1318 - . gene_id "ERV316A3_8q21.13i"; transcript_id "ERV316A3_8q21.13i"; locus "ERV316A3_8q21.13i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1585"; repClass "LTR"; repEnd "4938"; repFamily "ERVL"; repLeft "4469"; repStart "-288"; chr8 rmsk exon 81897150 81897427 894 - . gene_id "ERV316A3_8q21.13i"; transcript_id "ERV316A3_8q21.13i"; locus "ERV316A3_8q21.13i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1585"; repClass "LTR"; repEnd "4471"; repFamily "ERVL"; repLeft "4178"; repStart "-755"; chr8 rmsk exon 81897737 81897855 894 - . gene_id "ERV316A3_8q21.13i"; transcript_id "ERV316A3_8q21.13i"; locus "ERV316A3_8q21.13i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1585"; repClass "LTR"; repEnd "4177"; repFamily "ERVL"; repLeft "4068"; repStart "-1049"; ### HERVH_8q21.13b ### chr8 rmsk gene 81898016 81903943 . - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0702"; model_cov "5442"; model_pct "70.6"; chr8 rmsk exon 81898016 81898395 2244 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 81898396 81898946 3450 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr8 rmsk exon 81898940 81899327 2173 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5626"; repStart "-1697"; chr8 rmsk exon 81899327 81900425 6103 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "4861"; repFamily "ERV1"; repLeft "3806"; repStart "-2852"; chr8 rmsk exon 81900420 81900867 2671 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr8 rmsk exon 81900847 81903565 12693 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 81903566 81903943 2237 - . gene_id "HERVH_8q21.13b"; transcript_id "HERVH_8q21.13b"; locus "HERVH_8q21.13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0702"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_8q21.13c ### chr8 rmsk gene 81914411 81919891 . + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0703"; model_cov "4686"; model_pct "60.8"; chr8 rmsk exon 81914411 81914556 480 + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0703"; repClass "LTR"; repEnd "216"; repFamily "ERV1"; repLeft "-248"; repStart "15"; chr8 rmsk exon 81914557 81918759 17366 + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0703"; repClass "LTR"; repEnd "4983"; repFamily "ERV1"; repLeft "-2730"; repStart "763"; chr8 rmsk exon 81919058 81919097 17366 + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0703"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "4984"; chr8 rmsk exon 81919102 81919523 2581 + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0703"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr8 rmsk exon 81919524 81919891 1919 + . gene_id "HERVH_8q21.13c"; transcript_id "HERVH_8q21.13c"; locus "HERVH_8q21.13c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0703"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL40_8q21.13 ### chr8 rmsk gene 82560696 82562409 . - . gene_id "HERVL40_8q21.13"; transcript_id "HERVL40_8q21.13"; locus "HERVL40_8q21.13"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0243"; model_cov "646"; model_pct "11.7"; chr8 rmsk exon 82560696 82560791 984 - . gene_id "HERVL40_8q21.13"; transcript_id "HERVL40_8q21.13"; locus "HERVL40_8q21.13"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0243"; repClass "LTR"; repEnd "213"; repFamily "ERVL"; repLeft "117"; repStart "-306"; chr8 rmsk exon 82561308 82561950 1806 - . gene_id "HERVL40_8q21.13"; transcript_id "HERVL40_8q21.13"; locus "HERVL40_8q21.13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0243"; repClass "LTR"; repEnd "4401"; repFamily "ERVL"; repLeft "3755"; repStart "-1129"; chr8 rmsk exon 82561961 82562280 638 - . gene_id "HERVL40_8q21.13"; transcript_id "HERVL40_8q21.13"; locus "HERVL40_8q21.13"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0243"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "54"; repStart "-70"; chr8 rmsk exon 82562316 82562409 324 - . gene_id "HERVL40_8q21.13"; transcript_id "HERVL40_8q21.13"; locus "HERVL40_8q21.13"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0243"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "44"; repStart "-325"; ### ERVLB4_8q21.13f ### chr8 rmsk gene 82914763 82916042 . + . gene_id "ERVLB4_8q21.13f"; transcript_id "ERVLB4_8q21.13f"; locus "ERVLB4_8q21.13f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0958"; model_cov "932"; model_pct "16.3"; chr8 rmsk exon 82914763 82914938 625 + . gene_id "ERVLB4_8q21.13f"; transcript_id "ERVLB4_8q21.13f"; locus "ERVLB4_8q21.13f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0958"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "-1420"; repStart "4142"; chr8 rmsk exon 82915266 82915683 625 + . gene_id "ERVLB4_8q21.13f"; transcript_id "ERVLB4_8q21.13f"; locus "ERVLB4_8q21.13f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0958"; repClass "LTR"; repEnd "4751"; repFamily "ERVL"; repLeft "-963"; repStart "4295"; chr8 rmsk exon 82915732 82916042 521 + . gene_id "ERVLB4_8q21.13f"; transcript_id "ERVLB4_8q21.13f"; locus "ERVLB4_8q21.13f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0958"; repClass "LTR"; repEnd "5192"; repFamily "ERVL"; repLeft "-522"; repStart "4868"; ### MER4_8q21.13a ### chr8 rmsk gene 82967523 82971879 . - . gene_id "MER4_8q21.13a"; transcript_id "MER4_8q21.13a"; locus "MER4_8q21.13a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0430"; model_cov "3832"; model_pct "58.1"; chr8 rmsk exon 82967523 82967957 2584 - . gene_id "MER4_8q21.13a"; transcript_id "MER4_8q21.13a"; locus "MER4_8q21.13a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0430"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr8 rmsk exon 82967966 82970494 14912 - . gene_id "MER4_8q21.13a"; transcript_id "MER4_8q21.13a"; locus "MER4_8q21.13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0430"; repClass "LTR"; repEnd "6579"; repFamily "ERV1"; repLeft "4014"; repStart "-19"; chr8 rmsk exon 82970773 82970988 14912 - . gene_id "MER4_8q21.13a"; transcript_id "MER4_8q21.13a"; locus "MER4_8q21.13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0430"; repClass "LTR"; repEnd "4013"; repFamily "ERV1"; repLeft "3815"; repStart "-2585"; chr8 rmsk exon 82970987 82971879 4742 - . gene_id "MER4_8q21.13a"; transcript_id "MER4_8q21.13a"; locus "MER4_8q21.13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0430"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "2607"; repStart "-2922"; ### MER4_8q21.13b ### chr8 rmsk gene 82972124 82974960 . - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0431"; model_cov "1796"; model_pct "27.2"; chr8 rmsk exon 82972124 82972831 4742 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0431"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "2826"; repStart "-2922"; chr8 rmsk exon 82972928 82973168 1345 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0431"; repClass "LTR"; repEnd "1016"; repFamily "ERV1"; repLeft "793"; repStart "-5582"; chr8 rmsk exon 82973166 82973388 3067 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0431"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "370"; repStart "-6006"; chr8 rmsk exon 82973692 82974034 3067 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0431"; repClass "LTR"; repEnd "369"; repFamily "ERV1"; repLeft "29"; repStart "-6229"; chr8 rmsk exon 82974392 82974529 592 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0431"; repClass "LTR"; repEnd "162"; repFamily "ERV1"; repLeft "1"; repStart "-6436"; chr8 rmsk exon 82974533 82974960 2660 - . gene_id "MER4_8q21.13b"; transcript_id "MER4_8q21.13b"; locus "MER4_8q21.13b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0431"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_8q21.13c ### chr8 rmsk gene 83063481 83070505 . + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0074"; model_cov "6158"; model_pct "94.2"; chr8 rmsk exon 83063481 83063773 1367 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "MER51C"; geneRegion "ltr"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "640"; repFamily "ERV1"; repLeft "0"; repStart "341"; chr8 rmsk exon 83063774 83063841 295 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "-1205"; repFamily "ERV1"; repLeft "-7744"; repStart "-1276"; chr8 rmsk exon 83063931 83064353 1892 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-6039"; repStart "60"; chr8 rmsk exon 83064695 83065163 21701 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "1089"; repFamily "ERV1"; repLeft "-5450"; repStart "554"; chr8 rmsk exon 83065483 83066060 21701 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "1686"; repFamily "ERV1"; repLeft "-4853"; repStart "1090"; chr8 rmsk exon 83066142 83070505 21701 + . gene_id "HERV4_8q21.13c"; transcript_id "HERV4_8q21.13c"; locus "HERV4_8q21.13c"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0074"; repClass "LTR"; repEnd "6203"; repFamily "ERV1"; repLeft "-336"; repStart "1687"; ### HERVL_8q21.13f ### chr8 rmsk gene 83086915 83090915 . + . gene_id "HERVL_8q21.13f"; transcript_id "HERVL_8q21.13f"; locus "HERVL_8q21.13f"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0764"; model_cov "2511"; model_pct "44.4"; chr8 rmsk exon 83086915 83087598 475 + . gene_id "HERVL_8q21.13f"; transcript_id "HERVL_8q21.13f"; locus "HERVL_8q21.13f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0764"; repClass "LTR"; repEnd "1365"; repFamily "ERVL"; repLeft "-4289"; repStart "661"; chr8 rmsk exon 83087909 83088232 445 + . gene_id "HERVL_8q21.13f"; transcript_id "HERVL_8q21.13f"; locus "HERVL_8q21.13f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0764"; repClass "LTR"; repEnd "2068"; repFamily "ERVL"; repLeft "-3586"; repStart "1788"; chr8 rmsk exon 83089218 83090252 1156 + . gene_id "HERVL_8q21.13f"; transcript_id "HERVL_8q21.13f"; locus "HERVL_8q21.13f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0764"; repClass "LTR"; repEnd "3198"; repFamily "ERVL"; repLeft "-2456"; repStart "1907"; chr8 rmsk exon 83090683 83090915 533 + . gene_id "HERVL_8q21.13f"; transcript_id "HERVL_8q21.13f"; locus "HERVL_8q21.13f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0764"; repClass "LTR"; repEnd "4185"; repFamily "ERVL"; repLeft "-1469"; repStart "3949"; ### ERV316A3_8q21.13j ### chr8 rmsk gene 83329063 83332871 . - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1587"; model_cov "1338"; model_pct "25.6"; chr8 rmsk exon 83329063 83329327 494 - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1587"; repClass "LTR"; repEnd "1542"; repFamily "ERVL"; repLeft "1270"; repStart "-3684"; chr8 rmsk exon 83331561 83331884 494 - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1587"; repClass "LTR"; repEnd "1267"; repFamily "ERVL"; repLeft "932"; repStart "-3959"; chr8 rmsk exon 83331934 83332160 461 - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1587"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "859"; repStart "-4130"; chr8 rmsk exon 83332253 83332729 340 - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1587"; repClass "LTR"; repEnd "727"; repFamily "ERVL"; repLeft "233"; repStart "-4499"; chr8 rmsk exon 83332731 83332871 445 - . gene_id "ERV316A3_8q21.13j"; transcript_id "ERV316A3_8q21.13j"; locus "ERV316A3_8q21.13j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1587"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "294"; repStart "0"; ### HUERSP1_8q21.13 ### chr8 rmsk gene 83351995 83359486 . - . gene_id "HUERSP1_8q21.13"; transcript_id "HUERSP1_8q21.13"; locus "HUERSP1_8q21.13"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0101"; model_cov "6261"; model_pct "100.0"; chr8 rmsk exon 83351995 83352688 4448 - . gene_id "HUERSP1_8q21.13"; transcript_id "HUERSP1_8q21.13"; locus "HUERSP1_8q21.13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0101"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 83352689 83357449 33700 - . gene_id "HUERSP1_8q21.13"; transcript_id "HUERSP1_8q21.13"; locus "HUERSP1_8q21.13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0101"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "1252"; repStart "0"; chr8 rmsk exon 83357487 83358790 33700 - . gene_id "HUERSP1_8q21.13"; transcript_id "HUERSP1_8q21.13"; locus "HUERSP1_8q21.13"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0101"; repClass "LTR"; repEnd "1251"; repFamily "ERV1"; repLeft "1"; repStart "-5012"; chr8 rmsk exon 83358791 83359486 4310 - . gene_id "HUERSP1_8q21.13"; transcript_id "HUERSP1_8q21.13"; locus "HUERSP1_8q21.13"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0101"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL74_8q21.13 ### chr8 rmsk gene 83418603 83424421 . + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0051"; model_cov "4253"; model_pct "74.8"; chr8 rmsk exon 83418603 83419059 1992 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 83419462 83420032 1286 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "999"; repFamily "ERVL"; repLeft "-4686"; repStart "424"; chr8 rmsk exon 83420036 83420086 261 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "2505"; repFamily "ERVL"; repLeft "-3180"; repStart "2455"; chr8 rmsk exon 83420178 83420411 872 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "2913"; repFamily "ERVL"; repLeft "-2772"; repStart "2677"; chr8 rmsk exon 83420741 83420921 1445 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "3189"; repFamily "ERVL"; repLeft "-2496"; repStart "3007"; chr8 rmsk exon 83421267 83421388 1445 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "3311"; repFamily "ERVL"; repLeft "-2374"; repStart "3190"; chr8 rmsk exon 83421402 83424421 13596 + . gene_id "HERVL74_8q21.13"; transcript_id "HERVL74_8q21.13"; locus "HERVL74_8q21.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0051"; repClass "LTR"; repEnd "4520"; repFamily "ERVL"; repLeft "-1165"; repStart "1431"; ### HERVH_8q21.2a ### chr8 rmsk gene 83504703 83510920 . - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0704"; model_cov "5409"; model_pct "70.1"; chr8 rmsk exon 83504703 83505103 2547 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 83505104 83505481 2355 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7314"; repStart "0"; chr8 rmsk exon 83505474 83505693 1288 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr8 rmsk exon 83505691 83507351 10019 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr8 rmsk exon 83507344 83507489 859 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr8 rmsk exon 83507487 83510519 20091 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "1"; repStart "-4729"; chr8 rmsk exon 83510522 83510920 2450 - . gene_id "HERVH_8q21.2a"; transcript_id "HERVH_8q21.2a"; locus "HERVH_8q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0704"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_8q21.2b ### chr8 rmsk gene 83543715 83550668 . + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0705"; model_cov "5767"; model_pct "74.8"; chr8 rmsk exon 83543715 83544154 2456 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 83544178 83545417 4335 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "1629"; repFamily "ERV1"; repLeft "-6084"; repStart "22"; chr8 rmsk exon 83545974 83547212 7040 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "2845"; repFamily "ERV1"; repLeft "-4868"; repStart "1627"; chr8 rmsk exon 83547203 83549680 10694 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "3630"; chr8 rmsk exon 83549674 83550229 3370 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr8 rmsk exon 83550230 83550668 2155 + . gene_id "HERVH_8q21.2b"; transcript_id "HERVH_8q21.2b"; locus "HERVH_8q21.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0705"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8q21.2 ### chr8 rmsk gene 83712988 83714986 . - . gene_id "ERVLE_8q21.2"; transcript_id "ERVLE_8q21.2"; locus "ERVLE_8q21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2111"; model_cov "874"; model_pct "15.4"; chr8 rmsk exon 83712988 83713180 551 - . gene_id "ERVLE_8q21.2"; transcript_id "ERVLE_8q21.2"; locus "ERVLE_8q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2111"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "3928"; repStart "-1507"; chr8 rmsk exon 83713632 83713924 551 - . gene_id "ERVLE_8q21.2"; transcript_id "ERVLE_8q21.2"; locus "ERVLE_8q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2111"; repClass "LTR"; repEnd "3927"; repFamily "ERVL"; repLeft "3628"; repStart "-1740"; chr8 rmsk exon 83714645 83714986 674 - . gene_id "ERVLE_8q21.2"; transcript_id "ERVLE_8q21.2"; locus "ERVLE_8q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2111"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "2444"; repStart "-2880"; ### HERVL_8q21.2 ### chr8 rmsk gene 83716901 83718200 . + . gene_id "HERVL_8q21.2"; transcript_id "HERVL_8q21.2"; locus "HERVL_8q21.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0765"; model_cov "912"; model_pct "16.1"; chr8 rmsk exon 83716901 83716955 339 + . gene_id "HERVL_8q21.2"; transcript_id "HERVL_8q21.2"; locus "HERVL_8q21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0765"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; chr8 rmsk exon 83716956 83717486 4018 + . gene_id "HERVL_8q21.2"; transcript_id "HERVL_8q21.2"; locus "HERVL_8q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0765"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-5123"; repStart "1"; chr8 rmsk exon 83717488 83717868 2847 + . gene_id "HERVL_8q21.2"; transcript_id "HERVL_8q21.2"; locus "HERVL_8q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0765"; repClass "LTR"; repEnd "1372"; repFamily "ERVL"; repLeft "-4282"; repStart "990"; chr8 rmsk exon 83717870 83718200 2331 + . gene_id "HERVL_8q21.2"; transcript_id "HERVL_8q21.2"; locus "HERVL_8q21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0765"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "119"; ### MER41_8q21.2 ### chr8 rmsk gene 83728663 83729381 . - . gene_id "MER41_8q21.2"; transcript_id "MER41_8q21.2"; locus "MER41_8q21.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0300"; model_cov "675"; model_pct "11.4"; chr8 rmsk exon 83728663 83728834 751 - . gene_id "MER41_8q21.2"; transcript_id "MER41_8q21.2"; locus "MER41_8q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0300"; repClass "LTR"; repEnd "1957"; repFamily "ERV1"; repLeft "1833"; repStart "-3989"; chr8 rmsk exon 83728832 83729220 2044 - . gene_id "MER41_8q21.2"; transcript_id "MER41_8q21.2"; locus "MER41_8q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0300"; repClass "LTR"; repEnd "2294"; repFamily "ERV1"; repLeft "1890"; repStart "-3652"; chr8 rmsk exon 83729229 83729381 742 - . gene_id "MER41_8q21.2"; transcript_id "MER41_8q21.2"; locus "MER41_8q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0300"; repClass "LTR"; repEnd "1137"; repFamily "ERV1"; repLeft "990"; repStart "-4809"; ### LTR57_8q21.2a ### chr8 rmsk gene 83911721 83912417 . + . gene_id "LTR57_8q21.2a"; transcript_id "LTR57_8q21.2a"; locus "LTR57_8q21.2a"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0098"; model_cov "691"; model_pct "12.9"; chr8 rmsk exon 83911721 83912417 3543 + . gene_id "LTR57_8q21.2a"; transcript_id "LTR57_8q21.2a"; locus "LTR57_8q21.2a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0098"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "-4354"; repStart "298"; ### LTR57_8q21.2b ### chr8 rmsk gene 84641431 84642659 . - . gene_id "LTR57_8q21.2b"; transcript_id "LTR57_8q21.2b"; locus "LTR57_8q21.2b"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0099"; model_cov "1271"; model_pct "23.8"; chr8 rmsk exon 84641431 84642659 4987 - . gene_id "LTR57_8q21.2b"; transcript_id "LTR57_8q21.2b"; locus "LTR57_8q21.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0099"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "324"; repStart "-3748"; ### ERV316A3_8q21.2 ### chr8 rmsk gene 84969857 84971069 . - . gene_id "ERV316A3_8q21.2"; transcript_id "ERV316A3_8q21.2"; locus "ERV316A3_8q21.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1588"; model_cov "820"; model_pct "15.7"; chr8 rmsk exon 84969857 84970212 1357 - . gene_id "ERV316A3_8q21.2"; transcript_id "ERV316A3_8q21.2"; locus "ERV316A3_8q21.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1588"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "78"; repStart "-14"; chr8 rmsk exon 84970256 84971069 2692 - . gene_id "ERV316A3_8q21.2"; transcript_id "ERV316A3_8q21.2"; locus "ERV316A3_8q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1588"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "4353"; repStart "-53"; ### HERVH_8q21.2c ### chr8 rmsk gene 85062831 85069153 . + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0706"; model_cov "5556"; model_pct "72.0"; chr8 rmsk exon 85062831 85063238 2623 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 85063241 85066515 20547 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr8 rmsk exon 85066506 85068174 8782 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3492"; chr8 rmsk exon 85068176 85068378 1198 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 85068377 85068745 2053 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 85068746 85069153 2629 + . gene_id "HERVH_8q21.2c"; transcript_id "HERVH_8q21.2c"; locus "HERVH_8q21.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0706"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH48_8q21.2 ### chr8 rmsk gene 85273771 85275053 . - . gene_id "HERVH48_8q21.2"; transcript_id "HERVH48_8q21.2"; locus "HERVH48_8q21.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0031"; model_cov "853"; model_pct "12.8"; chr8 rmsk exon 85273771 85274164 2916 - . gene_id "HERVH48_8q21.2"; transcript_id "HERVH48_8q21.2"; locus "HERVH48_8q21.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0031"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 85274168 85275053 4462 - . gene_id "HERVH48_8q21.2"; transcript_id "HERVH48_8q21.2"; locus "HERVH48_8q21.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0031"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "5794"; repStart "-7"; ### HERVL74_8q21.2 ### chr8 rmsk gene 85377957 85383520 . - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; category "prototype"; intModel "HERVL74-int"; locid "HERVL74-int_0052"; model_cov "1364"; model_pct "24.0"; chr8 rmsk exon 85377957 85378394 2477 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "13"; repStart "0"; chr8 rmsk exon 85378423 85378720 1333 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "5679"; repFamily "ERVL"; repLeft "5386"; repStart "-6"; chr8 rmsk exon 85380187 85380494 1108 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "4689"; repFamily "ERVL"; repLeft "4372"; repStart "-996"; chr8 rmsk exon 85382364 85382588 1312 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "4157"; repStart "-1301"; chr8 rmsk exon 85382626 85383174 1028 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "528"; repFamily "ERVL"; repLeft "1"; repStart "-5157"; chr8 rmsk exon 85383216 85383520 1441 - . gene_id "HERVL74_8q21.2"; transcript_id "HERVL74_8q21.2"; locus "HERVL74_8q21.2"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0052"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "13"; repStart "-129"; ### MER4B_8q21.3a ### chr8 rmsk gene 86274720 86280127 . - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0244"; model_cov "4136"; model_pct "61.2"; chr8 rmsk exon 86274720 86275344 3548 - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0244"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; chr8 rmsk exon 86275345 86276362 14560 - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0244"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5685"; repStart "0"; chr8 rmsk exon 86276650 86277341 14560 - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0244"; repClass "LTR"; repEnd "5684"; repFamily "ERV1"; repLeft "4994"; repStart "-1074"; chr8 rmsk exon 86277787 86279345 14999 - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0244"; repClass "LTR"; repEnd "4993"; repFamily "ERV1"; repLeft "3449"; repStart "-1765"; chr8 rmsk exon 86279336 86280127 7299 - . gene_id "MER4B_8q21.3a"; transcript_id "MER4B_8q21.3a"; locus "MER4B_8q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0244"; repClass "LTR"; repEnd "3201"; repFamily "ERV1"; repLeft "2372"; repStart "-3557"; ### MER4B_8q21.3b ### chr8 rmsk gene 86280440 86283054 . - . gene_id "MER4B_8q21.3b"; transcript_id "MER4B_8q21.3b"; locus "MER4B_8q21.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0245"; model_cov "2526"; model_pct "37.4"; chr8 rmsk exon 86280440 86282436 7299 - . gene_id "MER4B_8q21.3b"; transcript_id "MER4B_8q21.3b"; locus "MER4B_8q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0245"; repClass "LTR"; repEnd "3699"; repFamily "ERV1"; repLeft "1173"; repStart "-3059"; chr8 rmsk exon 86282470 86283054 3250 - . gene_id "MER4B_8q21.3b"; transcript_id "MER4B_8q21.3b"; locus "MER4B_8q21.3b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0245"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "1"; repStart "-37"; ### ERVLB4_8q21.3a ### chr8 rmsk gene 86773205 86774748 . + . gene_id "ERVLB4_8q21.3a"; transcript_id "ERVLB4_8q21.3a"; locus "ERVLB4_8q21.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0960"; model_cov "1085"; model_pct "19.0"; chr8 rmsk exon 86773205 86773424 1336 + . gene_id "ERVLB4_8q21.3a"; transcript_id "ERVLB4_8q21.3a"; locus "ERVLB4_8q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0960"; repClass "LTR"; repEnd "3747"; repFamily "ERVL"; repLeft "-1967"; repStart "3523"; chr8 rmsk exon 86773429 86774217 4323 + . gene_id "ERVLB4_8q21.3a"; transcript_id "ERVLB4_8q21.3a"; locus "ERVLB4_8q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0960"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "-9"; repStart "4844"; chr8 rmsk exon 86774226 86774748 2648 + . gene_id "ERVLB4_8q21.3a"; transcript_id "ERVLB4_8q21.3a"; locus "ERVLB4_8q21.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0960"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERV9_8q21.3 ### chr8 rmsk gene 86925785 86933213 . - . gene_id "HERV9_8q21.3"; transcript_id "HERV9_8q21.3"; locus "HERV9_8q21.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0111"; model_cov "7233"; model_pct "85.7"; chr8 rmsk exon 86925785 86926210 2755 - . gene_id "HERV9_8q21.3"; transcript_id "HERV9_8q21.3"; locus "HERV9_8q21.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0111"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 86926220 86927617 10607 - . gene_id "HERV9_8q21.3"; transcript_id "HERV9_8q21.3"; locus "HERV9_8q21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0111"; repClass "LTR"; repEnd "8414"; repFamily "ERV1"; repLeft "7012"; repStart "-22"; chr8 rmsk exon 86927592 86933213 41512 - . gene_id "HERV9_8q21.3"; transcript_id "HERV9_8q21.3"; locus "HERV9_8q21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0111"; repClass "LTR"; repEnd "6514"; repFamily "ERV1"; repLeft "683"; repStart "-1922"; ### LTR25_8q21.3 ### chr8 rmsk gene 86953342 86954832 . - . gene_id "LTR25_8q21.3"; transcript_id "LTR25_8q21.3"; locus "LTR25_8q21.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0066"; model_cov "1144"; model_pct "15.9"; chr8 rmsk exon 86953342 86953584 4208 - . gene_id "LTR25_8q21.3"; transcript_id "LTR25_8q21.3"; locus "LTR25_8q21.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0066"; repClass "LTR"; repEnd "5639"; repFamily "ERV1"; repLeft "5403"; repStart "-1549"; chr8 rmsk exon 86953882 86954832 4208 - . gene_id "LTR25_8q21.3"; transcript_id "LTR25_8q21.3"; locus "LTR25_8q21.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0066"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "4494"; repStart "-1786"; ### MER4B_8q21.3c ### chr8 rmsk gene 87012276 87015196 . + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0246"; model_cov "1930"; model_pct "28.6"; chr8 rmsk exon 87012276 87013032 5312 + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0246"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 87013047 87013239 1241 + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0246"; repClass "LTR"; repEnd "202"; repFamily "ERV1"; repLeft "-6556"; repStart "7"; chr8 rmsk exon 87013329 87013418 384 + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0246"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "-5934"; repStart "752"; chr8 rmsk exon 87013444 87013620 1283 + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0246"; repClass "LTR"; repEnd "1084"; repFamily "ERV1"; repLeft "-5674"; repStart "924"; chr8 rmsk exon 87013650 87015196 6751 + . gene_id "MER4B_8q21.3c"; transcript_id "MER4B_8q21.3c"; locus "MER4B_8q21.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0246"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "-4113"; repStart "1142"; ### MER4B_8q21.3d ### chr8 rmsk gene 87015484 87019363 . + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0247"; model_cov "3461"; model_pct "51.2"; chr8 rmsk exon 87015484 87015709 6751 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "2630"; repFamily "ERV1"; repLeft "-4128"; repStart "2373"; chr8 rmsk exon 87016003 87016469 6751 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "3094"; repFamily "ERV1"; repLeft "-3664"; repStart "2631"; chr8 rmsk exon 87016459 87017087 3598 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3423"; chr8 rmsk exon 87017087 87017484 1431 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "4940"; repFamily "ERV1"; repLeft "-1818"; repStart "4452"; chr8 rmsk exon 87017525 87017587 351 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "5045"; repFamily "ERV1"; repLeft "-1713"; repStart "4982"; chr8 rmsk exon 87017624 87017961 6254 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "5498"; repFamily "ERV1"; repLeft "-1260"; repStart "5116"; chr8 rmsk exon 87018274 87019363 6254 + . gene_id "MER4B_8q21.3d"; transcript_id "MER4B_8q21.3d"; locus "MER4B_8q21.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0247"; repClass "LTR"; repEnd "6642"; repFamily "ERV1"; repLeft "-116"; repStart "5499"; ### HUERSP3_8q21.3 ### chr8 rmsk gene 87046067 87055053 . - . gene_id "HUERSP3_8q21.3"; transcript_id "HUERSP3_8q21.3"; locus "HUERSP3_8q21.3"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0112"; model_cov "8405"; model_pct "94.2"; chr8 rmsk exon 87046067 87051376 38927 - . gene_id "HUERSP3_8q21.3"; transcript_id "HUERSP3_8q21.3"; locus "HUERSP3_8q21.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0112"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "3044"; repStart "-484"; chr8 rmsk exon 87051891 87055053 38927 - . gene_id "HUERSP3_8q21.3"; transcript_id "HUERSP3_8q21.3"; locus "HUERSP3_8q21.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0112"; repClass "LTR"; repEnd "3043"; repFamily "ERV1"; repLeft "29"; repStart "-5876"; ### ERV316A3_8q21.3a ### chr8 rmsk gene 87109942 87113286 . - . gene_id "ERV316A3_8q21.3a"; transcript_id "ERV316A3_8q21.3a"; locus "ERV316A3_8q21.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1589"; model_cov "2656"; model_pct "50.8"; chr8 rmsk exon 87109942 87110196 758 - . gene_id "ERV316A3_8q21.3a"; transcript_id "ERV316A3_8q21.3a"; locus "ERV316A3_8q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1589"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "3167"; repStart "-1800"; chr8 rmsk exon 87110211 87112292 2571 - . gene_id "ERV316A3_8q21.3a"; transcript_id "ERV316A3_8q21.3a"; locus "ERV316A3_8q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1589"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "971"; repStart "-2128"; chr8 rmsk exon 87112385 87112653 363 - . gene_id "ERV316A3_8q21.3a"; transcript_id "ERV316A3_8q21.3a"; locus "ERV316A3_8q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1589"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "189"; repStart "-4767"; chr8 rmsk exon 87112858 87113286 1008 - . gene_id "ERV316A3_8q21.3a"; transcript_id "ERV316A3_8q21.3a"; locus "ERV316A3_8q21.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1589"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_8q21.3b ### chr8 rmsk gene 87237918 87238509 . - . gene_id "ERV316A3_8q21.3b"; transcript_id "ERV316A3_8q21.3b"; locus "ERV316A3_8q21.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1590"; model_cov "604"; model_pct "11.6"; chr8 rmsk exon 87237918 87238509 1439 - . gene_id "ERV316A3_8q21.3b"; transcript_id "ERV316A3_8q21.3b"; locus "ERV316A3_8q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1590"; repClass "LTR"; repEnd "2427"; repFamily "ERVL"; repLeft "1823"; repStart "-2799"; ### ERVLE_8q21.3a ### chr8 rmsk gene 87510993 87512896 . - . gene_id "ERVLE_8q21.3a"; transcript_id "ERVLE_8q21.3a"; locus "ERVLE_8q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2113"; model_cov "1467"; model_pct "25.9"; chr8 rmsk exon 87510993 87511585 684 - . gene_id "ERVLE_8q21.3a"; transcript_id "ERVLE_8q21.3a"; locus "ERVLE_8q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2113"; repClass "LTR"; repEnd "4958"; repFamily "ERVL"; repLeft "4233"; repStart "-709"; chr8 rmsk exon 87512270 87512896 967 - . gene_id "ERVLE_8q21.3a"; transcript_id "ERVLE_8q21.3a"; locus "ERVLE_8q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2113"; repClass "LTR"; repEnd "3982"; repFamily "ERVL"; repLeft "3240"; repStart "-1685"; ### HERVL40_8q21.3a ### chr8 rmsk gene 87662225 87665372 . - . gene_id "HERVL40_8q21.3a"; transcript_id "HERVL40_8q21.3a"; locus "HERVL40_8q21.3a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0245"; model_cov "2218"; model_pct "40.1"; chr8 rmsk exon 87662225 87662497 1116 - . gene_id "HERVL40_8q21.3a"; transcript_id "HERVL40_8q21.3a"; locus "HERVL40_8q21.3a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0245"; repClass "LTR"; repEnd "277"; repFamily "ERVL"; repLeft "3"; repStart "-242"; chr8 rmsk exon 87662500 87662777 1053 - . gene_id "HERVL40_8q21.3a"; transcript_id "HERVL40_8q21.3a"; locus "HERVL40_8q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0245"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5236"; repStart "0"; chr8 rmsk exon 87663243 87663491 357 - . gene_id "HERVL40_8q21.3a"; transcript_id "HERVL40_8q21.3a"; locus "HERVL40_8q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0245"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "4951"; repStart "-326"; chr8 rmsk exon 87663690 87665372 3458 - . gene_id "HERVL40_8q21.3a"; transcript_id "HERVL40_8q21.3a"; locus "HERVL40_8q21.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0245"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "2998"; repStart "-861"; ### ERV316A3_8q21.3c ### chr8 rmsk gene 87715761 87719773 . - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1591"; model_cov "981"; model_pct "18.8"; chr8 rmsk exon 87715761 87716108 735 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "4548"; repFamily "ERVL"; repLeft "4193"; repStart "-678"; chr8 rmsk exon 87718125 87718431 592 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "109"; repStart "0"; chr8 rmsk exon 87718445 87718511 261 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "53"; repFamily "ERVL"; repLeft "-12"; repStart "-385"; chr8 rmsk exon 87718597 87718658 1363 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "4473"; repFamily "ERVL"; repLeft "4415"; repStart "-753"; chr8 rmsk exon 87718962 87719496 1363 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "3907"; repStart "-812"; chr8 rmsk exon 87719711 87719773 1363 - . gene_id "ERV316A3_8q21.3c"; transcript_id "ERV316A3_8q21.3c"; locus "ERV316A3_8q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1591"; repClass "LTR"; repEnd "3906"; repFamily "ERVL"; repLeft "3845"; repStart "-1320"; ### ERVLE_8q21.3b ### chr8 rmsk gene 87739237 87739952 . + . gene_id "ERVLE_8q21.3b"; transcript_id "ERVLE_8q21.3b"; locus "ERVLE_8q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2114"; model_cov "726"; model_pct "12.8"; chr8 rmsk exon 87739237 87739952 1137 + . gene_id "ERVLE_8q21.3b"; transcript_id "ERVLE_8q21.3b"; locus "ERVLE_8q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2114"; repClass "LTR"; repEnd "5154"; repFamily "ERVL"; repLeft "-513"; repStart "4428"; ### ERV316A3_8q21.3d ### chr8 rmsk gene 87862864 87865641 . + . gene_id "ERV316A3_8q21.3d"; transcript_id "ERV316A3_8q21.3d"; locus "ERV316A3_8q21.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1592"; model_cov "1049"; model_pct "20.1"; chr8 rmsk exon 87862864 87863054 574 + . gene_id "ERV316A3_8q21.3d"; transcript_id "ERV316A3_8q21.3d"; locus "ERV316A3_8q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1592"; repClass "LTR"; repEnd "3484"; repFamily "ERVL"; repLeft "-1742"; repStart "3283"; chr8 rmsk exon 87863638 87864186 1127 + . gene_id "ERV316A3_8q21.3d"; transcript_id "ERV316A3_8q21.3d"; locus "ERV316A3_8q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1592"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "-965"; repStart "3713"; chr8 rmsk exon 87865145 87865390 541 + . gene_id "ERV316A3_8q21.3d"; transcript_id "ERV316A3_8q21.3d"; locus "ERV316A3_8q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1592"; repClass "LTR"; repEnd "4715"; repFamily "ERVL"; repLeft "-511"; repStart "4477"; chr8 rmsk exon 87865581 87865641 276 + . gene_id "ERV316A3_8q21.3d"; transcript_id "ERV316A3_8q21.3d"; locus "ERV316A3_8q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1592"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "4723"; ### ERVLE_8q21.3c ### chr8 rmsk gene 88018904 88023202 . - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2115"; model_cov "1639"; model_pct "28.9"; chr8 rmsk exon 88018904 88019007 449 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "3730"; repStart "-1832"; chr8 rmsk exon 88019021 88019159 344 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "3694"; repFamily "ERVL"; repLeft "3546"; repStart "-1973"; chr8 rmsk exon 88019184 88019442 689 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "3568"; repFamily "ERVL"; repLeft "3217"; repStart "-2099"; chr8 rmsk exon 88019680 88019941 1262 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "2623"; repStart "-2771"; chr8 rmsk exon 88020247 88020766 1262 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "2622"; repFamily "ERVL"; repLeft "2079"; repStart "-3045"; chr8 rmsk exon 88021473 88021577 265 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "1111"; repStart "-4444"; chr8 rmsk exon 88023095 88023202 312 - . gene_id "ERVLE_8q21.3c"; transcript_id "ERVLE_8q21.3c"; locus "ERVLE_8q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2115"; repClass "LTR"; repEnd "241"; repFamily "ERVL"; repLeft "134"; repStart "-5426"; ### HERVL40_8q21.3b ### chr8 rmsk gene 88354380 88356854 . + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0246"; model_cov "1265"; model_pct "22.9"; chr8 rmsk exon 88354380 88354812 1451 + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0246"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-4"; repStart "81"; chr8 rmsk exon 88355253 88355525 759 + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0246"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "-5264"; repStart "1"; chr8 rmsk exon 88355743 88355885 599 + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0246"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "-4961"; repStart "420"; chr8 rmsk exon 88356101 88356222 370 + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0246"; repClass "LTR"; repEnd "733"; repFamily "ERVL"; repLeft "-4797"; repStart "606"; chr8 rmsk exon 88356220 88356854 1539 + . gene_id "HERVL40_8q21.3b"; transcript_id "HERVL40_8q21.3b"; locus "HERVL40_8q21.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0246"; repClass "LTR"; repEnd "3539"; repFamily "ERVL"; repLeft "-1991"; repStart "2815"; ### HERVL40_8q21.3c ### chr8 rmsk gene 88409802 88411716 . - . gene_id "HERVL40_8q21.3c"; transcript_id "HERVL40_8q21.3c"; locus "HERVL40_8q21.3c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0247"; model_cov "1328"; model_pct "24.0"; chr8 rmsk exon 88409802 88409924 611 - . gene_id "HERVL40_8q21.3c"; transcript_id "HERVL40_8q21.3c"; locus "HERVL40_8q21.3c"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0247"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "341"; repStart "0"; chr8 rmsk exon 88409927 88410141 798 - . gene_id "HERVL40_8q21.3c"; transcript_id "HERVL40_8q21.3c"; locus "HERVL40_8q21.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0247"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "4220"; repStart "-1097"; chr8 rmsk exon 88410178 88410289 3795 - . gene_id "HERVL40_8q21.3c"; transcript_id "HERVL40_8q21.3c"; locus "HERVL40_8q21.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0247"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "4033"; repStart "-1386"; chr8 rmsk exon 88410720 88411716 3795 - . gene_id "HERVL40_8q21.3c"; transcript_id "HERVL40_8q21.3c"; locus "HERVL40_8q21.3c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0247"; repClass "LTR"; repEnd "4032"; repFamily "ERVL"; repLeft "3028"; repStart "-1498"; ### ERVLB4_8q21.3b ### chr8 rmsk gene 88555939 88562496 . + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0961"; model_cov "4410"; model_pct "77.2"; chr8 rmsk exon 88555939 88556290 1037 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "-63"; repStart "-10"; chr8 rmsk exon 88556346 88556380 537 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-44"; repStart "460"; chr8 rmsk exon 88556381 88557104 23186 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "1704"; repFamily "ERVL"; repLeft "-4010"; repStart "965"; chr8 rmsk exon 88557418 88559862 23186 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "4108"; repFamily "ERVL"; repLeft "-1606"; repStart "1705"; chr8 rmsk exon 88560546 88561783 23186 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "5377"; repFamily "ERVL"; repLeft "-337"; repStart "4109"; chr8 rmsk exon 88561784 88562260 2301 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "-61"; repStart "1"; chr8 rmsk exon 88562402 88562496 2301 + . gene_id "ERVLB4_8q21.3b"; transcript_id "ERVLB4_8q21.3b"; locus "ERVLB4_8q21.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0961"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "496"; ### HML5_8q21.3 ### chr8 rmsk gene 88607961 88611671 . - . gene_id "HML5_8q21.3"; transcript_id "HML5_8q21.3"; locus "HML5_8q21.3"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0073"; model_cov "3749"; model_pct "54.8"; chr8 rmsk exon 88607961 88611671 25392 - . gene_id "HML5_8q21.3"; transcript_id "HML5_8q21.3"; locus "HML5_8q21.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0073"; repClass "LTR"; repEnd "6080"; repFamily "ERVK"; repLeft "2331"; repStart "-757"; ### ERVLE_8q21.3d ### chr8 rmsk gene 88656480 88658505 . - . gene_id "ERVLE_8q21.3d"; transcript_id "ERVLE_8q21.3d"; locus "ERVLE_8q21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2116"; model_cov "1501"; model_pct "26.5"; chr8 rmsk exon 88656480 88657056 1478 - . gene_id "ERVLE_8q21.3d"; transcript_id "ERVLE_8q21.3d"; locus "ERVLE_8q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2116"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "3592"; repStart "-1469"; chr8 rmsk exon 88657360 88658061 1047 - . gene_id "ERVLE_8q21.3d"; transcript_id "ERVLE_8q21.3d"; locus "ERVLE_8q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2116"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "2510"; repStart "-2412"; chr8 rmsk exon 88658363 88658505 1047 - . gene_id "ERVLE_8q21.3d"; transcript_id "ERVLE_8q21.3d"; locus "ERVLE_8q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2116"; repClass "LTR"; repEnd "2509"; repFamily "ERVL"; repLeft "2359"; repStart "-3158"; ### HERVK11_8q21.3 ### chr8 rmsk gene 88670470 88676597 . - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0057"; model_cov "4769"; model_pct "60.0"; chr8 rmsk exon 88670470 88671439 4261 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "1"; repStart "-14"; chr8 rmsk exon 88671441 88672435 8435 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "7952"; repFamily "ERVK"; repLeft "6955"; repStart "-1"; chr8 rmsk exon 88672422 88673000 4457 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "6205"; repStart "-1186"; chr8 rmsk exon 88672997 88673108 840 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "5734"; repFamily "ERVK"; repLeft "5623"; repStart "-2219"; chr8 rmsk exon 88673108 88673161 373 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "5571"; repFamily "ERVK"; repLeft "5467"; repStart "-2382"; chr8 rmsk exon 88673153 88674744 12827 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "3011"; repStart "-3352"; chr8 rmsk exon 88674751 88674872 7428 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "1612"; repFamily "ERVK"; repLeft "1495"; repStart "-6341"; chr8 rmsk exon 88675359 88676597 7428 - . gene_id "HERVK11_8q21.3"; transcript_id "HERVK11_8q21.3"; locus "HERVK11_8q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0057"; repClass "LTR"; repEnd "1494"; repFamily "ERVK"; repLeft "206"; repStart "-6459"; ### HERVH_8q21.3a ### chr8 rmsk gene 88742217 88747528 . - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0707"; model_cov "4908"; model_pct "63.6"; chr8 rmsk exon 88742217 88742649 2958 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr8 rmsk exon 88742650 88743029 2532 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 88743028 88743244 1269 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 88743246 88743908 4268 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 88743911 88744411 3400 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 88744402 88744549 877 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 88744544 88747421 15831 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr8 rmsk exon 88747422 88747528 952 - . gene_id "HERVH_8q21.3a"; transcript_id "HERVH_8q21.3a"; locus "HERVH_8q21.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0707"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### HERVL_8q21.3a ### chr8 rmsk gene 88769443 88775883 . + . gene_id "HERVL_8q21.3a"; transcript_id "HERVL_8q21.3a"; locus "HERVL_8q21.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0766"; model_cov "5653"; model_pct "100.0"; chr8 rmsk exon 88769443 88769860 2914 + . gene_id "HERVL_8q21.3a"; transcript_id "HERVL_8q21.3a"; locus "HERVL_8q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0766"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 88769861 88775443 34903 + . gene_id "HERVL_8q21.3a"; transcript_id "HERVL_8q21.3a"; locus "HERVL_8q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0766"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 88775444 88775883 2623 + . gene_id "HERVL_8q21.3a"; transcript_id "HERVL_8q21.3a"; locus "HERVL_8q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0766"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-33"; repStart "1"; ### ERVLB4_8q21.3c ### chr8 rmsk gene 88828809 88830294 . - . gene_id "ERVLB4_8q21.3c"; transcript_id "ERVLB4_8q21.3c"; locus "ERVLB4_8q21.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0962"; model_cov "1424"; model_pct "24.9"; chr8 rmsk exon 88828809 88829521 647 - . gene_id "ERVLB4_8q21.3c"; transcript_id "ERVLB4_8q21.3c"; locus "ERVLB4_8q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0962"; repClass "LTR"; repEnd "4964"; repFamily "ERVL"; repLeft "4281"; repStart "-750"; chr8 rmsk exon 88829618 88830294 755 - . gene_id "ERVLB4_8q21.3c"; transcript_id "ERVLB4_8q21.3c"; locus "ERVLB4_8q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0962"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "2981"; repStart "-1992"; ### ERV316A3_8q21.3e ### chr8 rmsk gene 89208679 89212564 . - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1593"; model_cov "2035"; model_pct "38.9"; chr8 rmsk exon 89208679 89208907 758 - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1593"; repClass "LTR"; repEnd "248"; repFamily "ERVL"; repLeft "6"; repStart "-190"; chr8 rmsk exon 89208990 89209320 423 - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1593"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "4032"; repStart "-670"; chr8 rmsk exon 89209515 89209913 998 - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1593"; repClass "LTR"; repEnd "4105"; repFamily "ERVL"; repLeft "3693"; repStart "-1121"; chr8 rmsk exon 89210529 89210574 250 - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1593"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "2987"; repStart "-2194"; chr8 rmsk exon 89211654 89212564 1659 - . gene_id "ERV316A3_8q21.3e"; transcript_id "ERV316A3_8q21.3e"; locus "ERV316A3_8q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1593"; repClass "LTR"; repEnd "2985"; repFamily "ERVL"; repLeft "1931"; repStart "-2241"; ### HERVIP10FH_8q21.3 ### chr8 rmsk gene 89233917 89240391 . - . gene_id "HERVIP10FH_8q21.3"; transcript_id "HERVIP10FH_8q21.3"; locus "HERVIP10FH_8q21.3"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0093"; model_cov "4997"; model_pct "97.9"; chr8 rmsk exon 89233917 89234337 2731 - . gene_id "HERVIP10FH_8q21.3"; transcript_id "HERVIP10FH_8q21.3"; locus "HERVIP10FH_8q21.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0093"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "47"; repStart "0"; chr8 rmsk exon 89234649 89234694 2731 - . gene_id "HERVIP10FH_8q21.3"; transcript_id "HERVIP10FH_8q21.3"; locus "HERVIP10FH_8q21.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0093"; repClass "LTR"; repEnd "46"; repFamily "ERV1"; repLeft "1"; repStart "-465"; chr8 rmsk exon 89234695 89237564 34487 - . gene_id "HERVIP10FH_8q21.3"; transcript_id "HERVIP10FH_8q21.3"; locus "HERVIP10FH_8q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0093"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "2236"; repStart "0"; chr8 rmsk exon 89238256 89240391 34487 - . gene_id "HERVIP10FH_8q21.3"; transcript_id "HERVIP10FH_8q21.3"; locus "HERVIP10FH_8q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0093"; repClass "LTR"; repEnd "2235"; repFamily "ERV1"; repLeft "104"; repStart "-2867"; ### ERVLE_8q21.3e ### chr8 rmsk gene 89330815 89335376 . - . gene_id "ERVLE_8q21.3e"; transcript_id "ERVLE_8q21.3e"; locus "ERVLE_8q21.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2117"; model_cov "4362"; model_pct "77.0"; chr8 rmsk exon 89330815 89331108 3165 - . gene_id "ERVLE_8q21.3e"; transcript_id "ERVLE_8q21.3e"; locus "ERVLE_8q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2117"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "4497"; repStart "-872"; chr8 rmsk exon 89331464 89332086 3165 - . gene_id "ERVLE_8q21.3e"; transcript_id "ERVLE_8q21.3e"; locus "ERVLE_8q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2117"; repClass "LTR"; repEnd "4496"; repFamily "ERVL"; repLeft "3821"; repStart "-1171"; chr8 rmsk exon 89332178 89332630 1918 - . gene_id "ERVLE_8q21.3e"; transcript_id "ERVLE_8q21.3e"; locus "ERVLE_8q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2117"; repClass "LTR"; repEnd "3524"; repFamily "ERVL"; repLeft "3065"; repStart "-2143"; chr8 rmsk exon 89332642 89335376 6552 - . gene_id "ERVLE_8q21.3e"; transcript_id "ERVLE_8q21.3e"; locus "ERVLE_8q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2117"; repClass "LTR"; repEnd "3016"; repFamily "ERVL"; repLeft "86"; repStart "-2651"; ### HERVL_8q21.3b ### chr8 rmsk gene 89448797 89455259 . + . gene_id "HERVL_8q21.3b"; transcript_id "HERVL_8q21.3b"; locus "HERVL_8q21.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0767"; model_cov "5652"; model_pct "100.0"; chr8 rmsk exon 89448797 89449230 3048 + . gene_id "HERVL_8q21.3b"; transcript_id "HERVL_8q21.3b"; locus "HERVL_8q21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0767"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 89449231 89452426 40020 + . gene_id "HERVL_8q21.3b"; transcript_id "HERVL_8q21.3b"; locus "HERVL_8q21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0767"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "-2399"; repStart "1"; chr8 rmsk exon 89452469 89454821 40020 + . gene_id "HERVL_8q21.3b"; transcript_id "HERVL_8q21.3b"; locus "HERVL_8q21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0767"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3256"; chr8 rmsk exon 89454822 89455259 2603 + . gene_id "HERVL_8q21.3b"; transcript_id "HERVL_8q21.3b"; locus "HERVL_8q21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0767"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-101"; ### ERVLE_8q21.3f ### chr8 rmsk gene 89565770 89568395 . - . gene_id "ERVLE_8q21.3f"; transcript_id "ERVLE_8q21.3f"; locus "ERVLE_8q21.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2118"; model_cov "2109"; model_pct "37.2"; chr8 rmsk exon 89565770 89566261 2692 - . gene_id "ERVLE_8q21.3f"; transcript_id "ERVLE_8q21.3f"; locus "ERVLE_8q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2118"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5162"; repStart "-1"; chr8 rmsk exon 89566761 89567242 2692 - . gene_id "ERVLE_8q21.3f"; transcript_id "ERVLE_8q21.3f"; locus "ERVLE_8q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2118"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "4673"; repStart "-506"; chr8 rmsk exon 89567310 89568142 1839 - . gene_id "ERVLE_8q21.3f"; transcript_id "ERVLE_8q21.3f"; locus "ERVLE_8q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2118"; repClass "LTR"; repEnd "4550"; repFamily "ERVL"; repLeft "3642"; repStart "-1117"; chr8 rmsk exon 89568195 89568395 355 - . gene_id "ERVLE_8q21.3f"; transcript_id "ERVLE_8q21.3f"; locus "ERVLE_8q21.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2118"; repClass "LTR"; repEnd "3511"; repFamily "ERVL"; repLeft "3302"; repStart "-2156"; ### ERV316A3_8q21.3f ### chr8 rmsk gene 89987046 89989040 . - . gene_id "ERV316A3_8q21.3f"; transcript_id "ERV316A3_8q21.3f"; locus "ERV316A3_8q21.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1595"; model_cov "1986"; model_pct "38.0"; chr8 rmsk exon 89987046 89989040 4288 - . gene_id "ERV316A3_8q21.3f"; transcript_id "ERV316A3_8q21.3f"; locus "ERV316A3_8q21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1595"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "726"; repStart "-2514"; ### HERVH_8q21.3b ### chr8 rmsk gene 90090224 90095868 . - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0708"; model_cov "4909"; model_pct "63.6"; chr8 rmsk exon 90090224 90090657 2719 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 90090658 90091036 2508 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 90091035 90091249 1312 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr8 rmsk exon 90091247 90091911 4176 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 90091914 90092411 3282 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 90092402 90092549 850 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 90092546 90095434 19596 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr8 rmsk exon 90095435 90095868 2684 - . gene_id "HERVH_8q21.3b"; transcript_id "HERVH_8q21.3b"; locus "HERVH_8q21.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0708"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_8q21.3c ### chr8 rmsk gene 90409675 90416888 . - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0768"; model_cov "5585"; model_pct "98.8"; chr8 rmsk exon 90409675 90410220 2271 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-97"; repStart "0"; chr8 rmsk exon 90410224 90410390 1168 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5487"; repStart "0"; chr8 rmsk exon 90410387 90414959 35788 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "5383"; repFamily "ERVL"; repLeft "791"; repStart "-271"; chr8 rmsk exon 90415167 90415206 311 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "123"; repFamily "ERVL"; repLeft "84"; repStart "-5531"; chr8 rmsk exon 90415215 90415877 4872 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "781"; repFamily "ERVL"; repLeft "117"; repStart "-4873"; chr8 rmsk exon 90416183 90416344 3042 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "64"; repFamily "ERVL"; repLeft "-59"; repStart "-5590"; chr8 rmsk exon 90416346 90416888 2199 - . gene_id "HERVL_8q21.3c"; transcript_id "HERVL_8q21.3c"; locus "HERVL_8q21.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0768"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-100"; repStart "-1"; ### ERV316A3_8q21.3g ### chr8 rmsk gene 90771601 90776999 . - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1596"; model_cov "3667"; model_pct "70.2"; chr8 rmsk exon 90771601 90771761 574 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "280"; repStart "0"; chr8 rmsk exon 90771920 90772000 382 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "9"; repStart "-367"; chr8 rmsk exon 90772099 90772581 1312 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "4661"; repStart "-84"; chr8 rmsk exon 90773184 90773374 1312 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4472"; repStart "-566"; chr8 rmsk exon 90773646 90774788 4821 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "2971"; repStart "-1093"; chr8 rmsk exon 90775143 90776540 4821 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "2970"; repFamily "ERVL"; repLeft "1562"; repStart "-2256"; chr8 rmsk exon 90776589 90776999 4821 - . gene_id "ERV316A3_8q21.3g"; transcript_id "ERV316A3_8q21.3g"; locus "ERV316A3_8q21.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1596"; repClass "LTR"; repEnd "1801"; repFamily "ERVL"; repLeft "1373"; repStart "-3425"; ### ERVLE_8q21.3g ### chr8 rmsk gene 91026905 91028799 . + . gene_id "ERVLE_8q21.3g"; transcript_id "ERVLE_8q21.3g"; locus "ERVLE_8q21.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2119"; model_cov "2085"; model_pct "36.8"; chr8 rmsk exon 91026905 91028303 2931 + . gene_id "ERVLE_8q21.3g"; transcript_id "ERVLE_8q21.3g"; locus "ERVLE_8q21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2119"; repClass "LTR"; repEnd "1688"; repFamily "ERVL"; repLeft "-3979"; repStart "239"; chr8 rmsk exon 91028324 91028799 963 + . gene_id "ERVLE_8q21.3g"; transcript_id "ERVLE_8q21.3g"; locus "ERVLE_8q21.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2119"; repClass "LTR"; repEnd "2324"; repFamily "ERVL"; repLeft "-3343"; repStart "1688"; ### MER41_8q21.3a ### chr8 rmsk gene 91500577 91505269 . - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0303"; model_cov "4418"; model_pct "74.3"; chr8 rmsk exon 91500577 91501044 3342 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0303"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-85"; chr8 rmsk exon 91501051 91502194 7858 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0303"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "3561"; repStart "-1112"; chr8 rmsk exon 91502462 91504230 7747 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0303"; repClass "LTR"; repEnd "4100"; repFamily "ERV1"; repLeft "1870"; repStart "-1846"; chr8 rmsk exon 91504214 91504812 4023 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0303"; repClass "LTR"; repEnd "859"; repFamily "ERV1"; repLeft "232"; repStart "-5087"; chr8 rmsk exon 91504814 91505080 1018 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0303"; repClass "LTR"; repEnd "289"; repFamily "ERV1"; repLeft "1"; repStart "-5657"; chr8 rmsk exon 91505116 91505269 1021 - . gene_id "MER41_8q21.3a"; transcript_id "MER41_8q21.3a"; locus "MER41_8q21.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0303"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "401"; repStart "0"; ### ERV316A3_8q21.3h ### chr8 rmsk gene 91782429 91784167 . - . gene_id "ERV316A3_8q21.3h"; transcript_id "ERV316A3_8q21.3h"; locus "ERV316A3_8q21.3h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1597"; model_cov "1404"; model_pct "26.9"; chr8 rmsk exon 91782429 91782685 703 - . gene_id "ERV316A3_8q21.3h"; transcript_id "ERV316A3_8q21.3h"; locus "ERV316A3_8q21.3h"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1597"; repClass "LTR"; repEnd "255"; repFamily "ERVL"; repLeft "5"; repStart "-234"; chr8 rmsk exon 91782789 91783626 1017 - . gene_id "ERV316A3_8q21.3h"; transcript_id "ERV316A3_8q21.3h"; locus "ERV316A3_8q21.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1597"; repClass "LTR"; repEnd "4899"; repFamily "ERVL"; repLeft "3821"; repStart "-327"; chr8 rmsk exon 91783663 91783842 427 - . gene_id "ERV316A3_8q21.3h"; transcript_id "ERV316A3_8q21.3h"; locus "ERV316A3_8q21.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1597"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "2906"; repStart "-2140"; chr8 rmsk exon 91784019 91784167 351 - . gene_id "ERV316A3_8q21.3h"; transcript_id "ERV316A3_8q21.3h"; locus "ERV316A3_8q21.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1597"; repClass "LTR"; repEnd "1751"; repFamily "ERVL"; repLeft "1605"; repStart "-3475"; ### HERVH_8q21.3c ### chr8 rmsk gene 91948321 91952724 . + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0709"; model_cov "3911"; model_pct "50.7"; chr8 rmsk exon 91948321 91948427 901 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "366"; chr8 rmsk exon 91948428 91951377 17389 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr8 rmsk exon 91951357 91951506 961 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 91951497 91951658 960 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr8 rmsk exon 91951651 91952261 4364 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr8 rmsk exon 91952262 91952724 2182 + . gene_id "HERVH_8q21.3c"; transcript_id "HERVH_8q21.3c"; locus "HERVH_8q21.3c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0709"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "-39"; repStart "1"; ### ERV316A3_8q21.3i ### chr8 rmsk gene 92175870 92177756 . + . gene_id "ERV316A3_8q21.3i"; transcript_id "ERV316A3_8q21.3i"; locus "ERV316A3_8q21.3i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1598"; model_cov "1177"; model_pct "22.5"; chr8 rmsk exon 92175870 92176231 1237 + . gene_id "ERV316A3_8q21.3i"; transcript_id "ERV316A3_8q21.3i"; locus "ERV316A3_8q21.3i"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1598"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "48"; chr8 rmsk exon 92176523 92176592 402 + . gene_id "ERV316A3_8q21.3i"; transcript_id "ERV316A3_8q21.3i"; locus "ERV316A3_8q21.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1598"; repClass "LTR"; repEnd "2834"; repFamily "ERVL"; repLeft "-2392"; repStart "2775"; chr8 rmsk exon 92176682 92176818 261 + . gene_id "ERV316A3_8q21.3i"; transcript_id "ERV316A3_8q21.3i"; locus "ERV316A3_8q21.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1598"; repClass "LTR"; repEnd "3024"; repFamily "ERVL"; repLeft "-2202"; repStart "2878"; chr8 rmsk exon 92176842 92177756 2693 + . gene_id "ERV316A3_8q21.3i"; transcript_id "ERV316A3_8q21.3i"; locus "ERV316A3_8q21.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1598"; repClass "LTR"; repEnd "4386"; repFamily "ERVL"; repLeft "-840"; repStart "3414"; ### MER41_8q21.3b ### chr8 rmsk gene 92203830 92209322 . - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0304"; model_cov "5670"; model_pct "95.4"; chr8 rmsk exon 92203830 92204286 3340 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0304"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr8 rmsk exon 92204287 92205382 12412 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0304"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4837"; repStart "-2"; chr8 rmsk exon 92205686 92207965 12412 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0304"; repClass "LTR"; repEnd "4836"; repFamily "ERV1"; repLeft "1269"; repStart "-1110"; chr8 rmsk exon 92208080 92208990 2519 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0304"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "632"; repStart "-4507"; chr8 rmsk exon 92208990 92209082 393 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0304"; repClass "LTR"; repEnd "89"; repFamily "ERV1"; repLeft "1"; repStart "-5857"; chr8 rmsk exon 92209092 92209168 384 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0304"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr8 rmsk exon 92209169 92209322 1135 - . gene_id "MER41_8q21.3b"; transcript_id "MER41_8q21.3b"; locus "MER41_8q21.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0304"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "401"; repStart "0"; ### HML3_8q21.3 ### chr8 rmsk gene 92236543 92242718 . + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0143"; model_cov "5094"; model_pct "84.6"; chr8 rmsk exon 92236543 92237055 4111 + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0143"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 92237056 92237717 19533 + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0143"; repClass "LTR"; repEnd "670"; repFamily "ERVK"; repLeft "-5351"; repStart "1"; chr8 rmsk exon 92237815 92239912 19533 + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0143"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "671"; chr8 rmsk exon 92239913 92242205 17782 + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0143"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3723"; chr8 rmsk exon 92242206 92242718 4187 + . gene_id "HML3_8q21.3"; transcript_id "HML3_8q21.3"; locus "HML3_8q21.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0143"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_8q22.1a ### chr8 rmsk gene 92765117 92770386 . - . gene_id "HERVL_8q22.1a"; transcript_id "HERVL_8q22.1a"; locus "HERVL_8q22.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0770"; model_cov "4818"; model_pct "85.2"; chr8 rmsk exon 92765117 92769888 36920 - . gene_id "HERVL_8q22.1a"; transcript_id "HERVL_8q22.1a"; locus "HERVL_8q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0770"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "563"; repStart "-273"; chr8 rmsk exon 92769985 92770386 3129 - . gene_id "HERVL_8q22.1a"; transcript_id "HERVL_8q22.1a"; locus "HERVL_8q22.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0770"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "1"; repStart "-48"; ### ERVLB4_8q22.1 ### chr8 rmsk gene 92905675 92906321 . + . gene_id "ERVLB4_8q22.1"; transcript_id "ERVLB4_8q22.1"; locus "ERVLB4_8q22.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0963"; model_cov "656"; model_pct "11.5"; chr8 rmsk exon 92905675 92905989 574 + . gene_id "ERVLB4_8q22.1"; transcript_id "ERVLB4_8q22.1"; locus "ERVLB4_8q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0963"; repClass "LTR"; repEnd "3422"; repFamily "ERVL"; repLeft "-2292"; repStart "3097"; chr8 rmsk exon 92906009 92906202 497 + . gene_id "ERVLB4_8q22.1"; transcript_id "ERVLB4_8q22.1"; locus "ERVLB4_8q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0963"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "-1892"; repStart "3626"; chr8 rmsk exon 92906186 92906321 333 + . gene_id "ERVLB4_8q22.1"; transcript_id "ERVLB4_8q22.1"; locus "ERVLB4_8q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0963"; repClass "LTR"; repEnd "5087"; repFamily "ERVL"; repLeft "-627"; repStart "4952"; ### ERVLE_8q22.1a ### chr8 rmsk gene 93351627 93353795 . + . gene_id "ERVLE_8q22.1a"; transcript_id "ERVLE_8q22.1a"; locus "ERVLE_8q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2121"; model_cov "1492"; model_pct "26.3"; chr8 rmsk exon 93351627 93352419 2942 + . gene_id "ERVLE_8q22.1a"; transcript_id "ERVLE_8q22.1a"; locus "ERVLE_8q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2121"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "-688"; repStart "4127"; chr8 rmsk exon 93353200 93353795 2562 + . gene_id "ERVLE_8q22.1a"; transcript_id "ERVLE_8q22.1a"; locus "ERVLE_8q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2121"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5027"; ### ERV316A3_8q22.1a ### chr8 rmsk gene 93523653 93528559 . - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1599"; model_cov "2523"; model_pct "48.3"; chr8 rmsk exon 93523653 93523835 1256 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "4456"; repFamily "ERVL"; repLeft "4270"; repStart "-770"; chr8 rmsk exon 93523967 93524139 1256 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "4269"; repFamily "ERVL"; repLeft "4081"; repStart "-957"; chr8 rmsk exon 93524162 93524906 2576 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3181"; repStart "-1270"; chr8 rmsk exon 93524934 93525971 3005 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "1950"; repStart "-2247"; chr8 rmsk exon 93526006 93526247 715 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "2136"; repFamily "ERVL"; repLeft "1895"; repStart "-3090"; chr8 rmsk exon 93528460 93528559 359 - . gene_id "ERV316A3_8q22.1a"; transcript_id "ERV316A3_8q22.1a"; locus "ERV316A3_8q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1599"; repClass "LTR"; repEnd "1395"; repFamily "ERVL"; repLeft "1291"; repStart "-3831"; ### ERV316A3_8q22.1b ### chr8 rmsk gene 93529002 93530374 . - . gene_id "ERV316A3_8q22.1b"; transcript_id "ERV316A3_8q22.1b"; locus "ERV316A3_8q22.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1600"; model_cov "775"; model_pct "14.8"; chr8 rmsk exon 93529002 93529134 364 - . gene_id "ERV316A3_8q22.1b"; transcript_id "ERV316A3_8q22.1b"; locus "ERV316A3_8q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1600"; repClass "LTR"; repEnd "1480"; repFamily "ERVL"; repLeft "1340"; repStart "-3746"; chr8 rmsk exon 93529171 93529764 1424 - . gene_id "ERV316A3_8q22.1b"; transcript_id "ERV316A3_8q22.1b"; locus "ERV316A3_8q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1600"; repClass "LTR"; repEnd "1014"; repFamily "ERVL"; repLeft "379"; repStart "-4212"; chr8 rmsk exon 93530016 93530374 670 - . gene_id "ERV316A3_8q22.1b"; transcript_id "ERV316A3_8q22.1b"; locus "ERV316A3_8q22.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1600"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "8"; repStart "-2"; ### HERVL_8q22.1b ### chr8 rmsk gene 94296141 94303550 . - . gene_id "HERVL_8q22.1b"; transcript_id "HERVL_8q22.1b"; locus "HERVL_8q22.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0771"; model_cov "5587"; model_pct "98.8"; chr8 rmsk exon 94296141 94299515 44555 - . gene_id "HERVL_8q22.1b"; transcript_id "HERVL_8q22.1b"; locus "HERVL_8q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0771"; repClass "LTR"; repEnd "5589"; repFamily "ERVL"; repLeft "2191"; repStart "-65"; chr8 rmsk exon 94300899 94303106 44555 - . gene_id "HERVL_8q22.1b"; transcript_id "HERVL_8q22.1b"; locus "HERVL_8q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0771"; repClass "LTR"; repEnd "2190"; repFamily "ERVL"; repLeft "1"; repStart "-3464"; chr8 rmsk exon 94303107 94303550 3667 - . gene_id "HERVL_8q22.1b"; transcript_id "HERVL_8q22.1b"; locus "HERVL_8q22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0771"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVFRD_8q22.1 ### chr8 rmsk gene 94576469 94579667 . - . gene_id "HERVFRD_8q22.1"; transcript_id "HERVFRD_8q22.1"; locus "HERVFRD_8q22.1"; category "internal"; intModel "MER50-int"; locid "MER50-int_0104"; model_cov "2740"; model_pct "38.0"; chr8 rmsk exon 94576469 94577403 9358 - . gene_id "HERVFRD_8q22.1"; transcript_id "HERVFRD_8q22.1"; locus "HERVFRD_8q22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0104"; repClass "LTR"; repEnd "4679"; repFamily "ERV1"; repLeft "3697"; repStart "-2526"; chr8 rmsk exon 94577699 94578110 9358 - . gene_id "HERVFRD_8q22.1"; transcript_id "HERVFRD_8q22.1"; locus "HERVFRD_8q22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0104"; repClass "LTR"; repEnd "3696"; repFamily "ERV1"; repLeft "3301"; repStart "-3509"; chr8 rmsk exon 94578410 94578914 9358 - . gene_id "HERVFRD_8q22.1"; transcript_id "HERVFRD_8q22.1"; locus "HERVFRD_8q22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0104"; repClass "LTR"; repEnd "3300"; repFamily "ERV1"; repLeft "2789"; repStart "-3905"; chr8 rmsk exon 94578911 94579667 4469 - . gene_id "HERVFRD_8q22.1"; transcript_id "HERVFRD_8q22.1"; locus "HERVFRD_8q22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0104"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "998"; repStart "-5355"; ### ERVLE_8q22.1b ### chr8 rmsk gene 95674839 95676764 . + . gene_id "ERVLE_8q22.1b"; transcript_id "ERVLE_8q22.1b"; locus "ERVLE_8q22.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2124"; model_cov "1515"; model_pct "26.7"; chr8 rmsk exon 95674839 95674949 538 + . gene_id "ERVLE_8q22.1b"; transcript_id "ERVLE_8q22.1b"; locus "ERVLE_8q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2124"; repClass "LTR"; repEnd "1787"; repFamily "ERVL"; repLeft "-3880"; repStart "1677"; chr8 rmsk exon 95674942 95675320 1704 + . gene_id "ERVLE_8q22.1b"; transcript_id "ERVLE_8q22.1b"; locus "ERVLE_8q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2124"; repClass "LTR"; repEnd "2365"; repFamily "ERVL"; repLeft "-3302"; repStart "1933"; chr8 rmsk exon 95675667 95676658 4195 + . gene_id "ERVLE_8q22.1b"; transcript_id "ERVLE_8q22.1b"; locus "ERVLE_8q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2124"; repClass "LTR"; repEnd "3321"; repFamily "ERVL"; repLeft "-2346"; repStart "2348"; chr8 rmsk exon 95676688 95676764 266 + . gene_id "ERVLE_8q22.1b"; transcript_id "ERVLE_8q22.1b"; locus "ERVLE_8q22.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2124"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "566"; ### ERV316A3_8q22.1c ### chr8 rmsk gene 95856949 95858606 . + . gene_id "ERV316A3_8q22.1c"; transcript_id "ERV316A3_8q22.1c"; locus "ERV316A3_8q22.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1601"; model_cov "954"; model_pct "18.3"; chr8 rmsk exon 95856949 95857909 2203 + . gene_id "ERV316A3_8q22.1c"; transcript_id "ERV316A3_8q22.1c"; locus "ERV316A3_8q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1601"; repClass "LTR"; repEnd "4928"; repFamily "ERVL"; repLeft "-298"; repStart "3974"; chr8 rmsk exon 95858167 95858606 1220 + . gene_id "ERV316A3_8q22.1c"; transcript_id "ERV316A3_8q22.1c"; locus "ERV316A3_8q22.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1601"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_8q22.1c ### chr8 rmsk gene 95870616 95872334 . - . gene_id "HERVL_8q22.1c"; transcript_id "HERVL_8q22.1c"; locus "HERVL_8q22.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0772"; model_cov "1185"; model_pct "21.0"; chr8 rmsk exon 95870616 95871275 5119 - . gene_id "HERVL_8q22.1c"; transcript_id "HERVL_8q22.1c"; locus "HERVL_8q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0772"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "2380"; repStart "-2615"; chr8 rmsk exon 95871282 95871812 3701 - . gene_id "HERVL_8q22.1c"; transcript_id "HERVL_8q22.1c"; locus "HERVL_8q22.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0772"; repClass "LTR"; repEnd "527"; repFamily "ERVL"; repLeft "1"; repStart "-5127"; chr8 rmsk exon 95871813 95871852 264 - . gene_id "HERVL_8q22.1c"; transcript_id "HERVL_8q22.1c"; locus "HERVL_8q22.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0772"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr8 rmsk exon 95871902 95872334 2820 - . gene_id "HERVL_8q22.1c"; transcript_id "HERVL_8q22.1c"; locus "HERVL_8q22.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0772"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-115"; repStart "-40"; ### ERV316A3_8q22.1d ### chr8 rmsk gene 96735582 96736748 . - . gene_id "ERV316A3_8q22.1d"; transcript_id "ERV316A3_8q22.1d"; locus "ERV316A3_8q22.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1602"; model_cov "1185"; model_pct "22.7"; chr8 rmsk exon 96735582 96736564 2334 - . gene_id "ERV316A3_8q22.1d"; transcript_id "ERV316A3_8q22.1d"; locus "ERV316A3_8q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1602"; repClass "LTR"; repEnd "3879"; repFamily "ERVL"; repLeft "2880"; repStart "-1347"; chr8 rmsk exon 96736562 96736748 739 - . gene_id "ERV316A3_8q22.1d"; transcript_id "ERV316A3_8q22.1d"; locus "ERV316A3_8q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1602"; repClass "LTR"; repEnd "2851"; repFamily "ERVL"; repLeft "2665"; repStart "-2375"; ### HERVL_8q22.1d ### chr8 rmsk gene 96889472 96891692 . - . gene_id "HERVL_8q22.1d"; transcript_id "HERVL_8q22.1d"; locus "HERVL_8q22.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0773"; model_cov "1717"; model_pct "30.4"; chr8 rmsk exon 96889472 96890004 2211 - . gene_id "HERVL_8q22.1d"; transcript_id "HERVL_8q22.1d"; locus "HERVL_8q22.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0773"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 96890005 96891692 11866 - . gene_id "HERVL_8q22.1d"; transcript_id "HERVL_8q22.1d"; locus "HERVL_8q22.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0773"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3937"; repStart "0"; ### HERVH_8q22.1a ### chr8 rmsk gene 97175029 97180739 . + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0710"; model_cov "4890"; model_pct "63.4"; chr8 rmsk exon 97175029 97175463 2736 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 97175470 97178476 20850 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "17"; chr8 rmsk exon 97178473 97178617 808 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 97178608 97179110 3438 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 97179113 97179731 3889 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 97179733 97179948 1456 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 97179947 97180298 2112 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 97180299 97180739 2706 + . gene_id "HERVH_8q22.1a"; transcript_id "HERVH_8q22.1a"; locus "HERVH_8q22.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0710"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_8q22.1b ### chr8 rmsk gene 97200770 97206656 . + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0711"; model_cov "4908"; model_pct "63.6"; chr8 rmsk exon 97200770 97201220 3551 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 97201223 97204318 17458 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8 rmsk exon 97204313 97204462 1007 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 97204453 97204957 3474 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 97204960 97205620 4545 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 97205622 97205843 1309 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 97205842 97206205 2372 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 97206206 97206656 3562 + . gene_id "HERVH_8q22.1b"; transcript_id "HERVH_8q22.1b"; locus "HERVH_8q22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0711"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q22.1c ### chr8 rmsk gene 97827675 97831909 . - . gene_id "HERVH_8q22.1c"; transcript_id "HERVH_8q22.1c"; locus "HERVH_8q22.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0712"; model_cov "3433"; model_pct "44.5"; chr8 rmsk exon 97827675 97828086 1909 - . gene_id "HERVH_8q22.1c"; transcript_id "HERVH_8q22.1c"; locus "HERVH_8q22.1c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0712"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "25"; repStart "-6"; chr8 rmsk exon 97828121 97829678 7760 - . gene_id "HERVH_8q22.1c"; transcript_id "HERVH_8q22.1c"; locus "HERVH_8q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0712"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6145"; repStart "0"; chr8 rmsk exon 97829995 97830513 7760 - . gene_id "HERVH_8q22.1c"; transcript_id "HERVH_8q22.1c"; locus "HERVH_8q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0712"; repClass "LTR"; repEnd "6144"; repFamily "ERV1"; repLeft "5630"; repStart "-1569"; chr8 rmsk exon 97830550 97831909 5634 - . gene_id "HERVH_8q22.1c"; transcript_id "HERVH_8q22.1c"; locus "HERVH_8q22.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0712"; repClass "LTR"; repEnd "5512"; repFamily "ERV1"; repLeft "4161"; repStart "-2201"; ### ERVLE_8q22.2a ### chr8 rmsk gene 98058964 98061563 . - . gene_id "ERVLE_8q22.2a"; transcript_id "ERVLE_8q22.2a"; locus "ERVLE_8q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2126"; model_cov "679"; model_pct "12.0"; chr8 rmsk exon 98058964 98059092 724 - . gene_id "ERVLE_8q22.2a"; transcript_id "ERVLE_8q22.2a"; locus "ERVLE_8q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2126"; repClass "LTR"; repEnd "4681"; repFamily "ERVL"; repLeft "4545"; repStart "-986"; chr8 rmsk exon 98059680 98059845 724 - . gene_id "ERVLE_8q22.2a"; transcript_id "ERVLE_8q22.2a"; locus "ERVLE_8q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2126"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "4409"; repStart "-1123"; chr8 rmsk exon 98060177 98060393 724 - . gene_id "ERVLE_8q22.2a"; transcript_id "ERVLE_8q22.2a"; locus "ERVLE_8q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2126"; repClass "LTR"; repEnd "4408"; repFamily "ERVL"; repLeft "4155"; repStart "-1259"; chr8 rmsk exon 98061411 98061563 603 - . gene_id "ERVLE_8q22.2a"; transcript_id "ERVLE_8q22.2a"; locus "ERVLE_8q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2126"; repClass "LTR"; repEnd "3937"; repFamily "ERVL"; repLeft "3782"; repStart "-1730"; ### ERVLE_8q22.2b ### chr8 rmsk gene 98769163 98770731 . + . gene_id "ERVLE_8q22.2b"; transcript_id "ERVLE_8q22.2b"; locus "ERVLE_8q22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2127"; model_cov "1291"; model_pct "22.8"; chr8 rmsk exon 98769163 98769234 2698 + . gene_id "ERVLE_8q22.2b"; transcript_id "ERVLE_8q22.2b"; locus "ERVLE_8q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2127"; repClass "LTR"; repEnd "77"; repFamily "ERVL"; repLeft "-5590"; repStart "5"; chr8 rmsk exon 98769598 98770731 2698 + . gene_id "ERVLE_8q22.2b"; transcript_id "ERVLE_8q22.2b"; locus "ERVLE_8q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2127"; repClass "LTR"; repEnd "1297"; repFamily "ERVL"; repLeft "-4370"; repStart "78"; ### HERVL40_8q22.2 ### chr8 rmsk gene 99217953 99219926 . - . gene_id "HERVL40_8q22.2"; transcript_id "HERVL40_8q22.2"; locus "HERVL40_8q22.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0248"; model_cov "1370"; model_pct "24.8"; chr8 rmsk exon 99217953 99218143 1364 - . gene_id "HERVL40_8q22.2"; transcript_id "HERVL40_8q22.2"; locus "HERVL40_8q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0248"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "4131"; repStart "-1207"; chr8 rmsk exon 99218332 99218727 1364 - . gene_id "HERVL40_8q22.2"; transcript_id "HERVL40_8q22.2"; locus "HERVL40_8q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0248"; repClass "LTR"; repEnd "4130"; repFamily "ERVL"; repLeft "3742"; repStart "-1400"; chr8 rmsk exon 99218783 99219454 3096 - . gene_id "HERVL40_8q22.2"; transcript_id "HERVL40_8q22.2"; locus "HERVL40_8q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0248"; repClass "LTR"; repEnd "3636"; repFamily "ERVL"; repLeft "2934"; repStart "-1894"; chr8 rmsk exon 99219839 99219926 3096 - . gene_id "HERVL40_8q22.2"; transcript_id "HERVL40_8q22.2"; locus "HERVL40_8q22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0248"; repClass "LTR"; repEnd "2933"; repFamily "ERVL"; repLeft "2845"; repStart "-2597"; ### HERVH_8q22.2 ### chr8 rmsk gene 99943695 99949609 . + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0714"; model_cov "5059"; model_pct "65.6"; chr8 rmsk exon 99943695 99944123 2660 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 99944126 99947417 19122 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr8 rmsk exon 99947408 99947907 3152 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 99947910 99948583 3945 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 99948585 99948805 1223 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 99948806 99949176 2264 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 99949177 99949609 2622 + . gene_id "HERVH_8q22.2"; transcript_id "HERVH_8q22.2"; locus "HERVH_8q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0714"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "-21"; ### HERVL_8q22.2 ### chr8 rmsk gene 100202983 100209403 . + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0774"; model_cov "5146"; model_pct "91.0"; chr8 rmsk exon 100202983 100203384 2651 + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0774"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 100203385 100205734 29492 + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0774"; repClass "LTR"; repEnd "2323"; repFamily "ERVL"; repLeft "-3331"; repStart "1"; chr8 rmsk exon 100206048 100207667 29492 + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0774"; repClass "LTR"; repEnd "3892"; repFamily "ERVL"; repLeft "-1762"; repStart "2324"; chr8 rmsk exon 100207665 100208911 9573 + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0774"; repClass "LTR"; repEnd "5651"; repFamily "ERVL"; repLeft "-3"; repStart "4395"; chr8 rmsk exon 100208917 100209403 3007 + . gene_id "HERVL_8q22.2"; transcript_id "HERVL_8q22.2"; locus "HERVL_8q22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0774"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### ERVLE_8q22.3a ### chr8 rmsk gene 102031895 102034477 . + . gene_id "ERVLE_8q22.3a"; transcript_id "ERVLE_8q22.3a"; locus "ERVLE_8q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2128"; model_cov "2529"; model_pct "44.6"; chr8 rmsk exon 102031895 102033876 4924 + . gene_id "ERVLE_8q22.3a"; transcript_id "ERVLE_8q22.3a"; locus "ERVLE_8q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2128"; repClass "LTR"; repEnd "5240"; repFamily "ERVL"; repLeft "-427"; repStart "3131"; chr8 rmsk exon 102034055 102034477 617 + . gene_id "ERVLE_8q22.3a"; transcript_id "ERVLE_8q22.3a"; locus "ERVLE_8q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2128"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5247"; ### MER41_8q22.3 ### chr8 rmsk gene 102086680 102092487 . + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0305"; model_cov "5153"; model_pct "86.7"; chr8 rmsk exon 102086680 102087231 3960 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0305"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 102087232 102087924 3894 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0305"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "1"; chr8 rmsk exon 102087897 102088347 1833 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0305"; repClass "LTR"; repEnd "1710"; repFamily "ERV1"; repLeft "-4236"; repStart "1355"; chr8 rmsk exon 102088348 102089112 2376 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0305"; repClass "LTR"; repEnd "2731"; repFamily "ERV1"; repLeft "-3215"; repStart "1867"; chr8 rmsk exon 102089423 102089629 2376 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0305"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2732"; chr8 rmsk exon 102089617 102091946 12361 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0305"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2856"; chr8 rmsk exon 102091947 102092487 3836 + . gene_id "MER41_8q22.3"; transcript_id "MER41_8q22.3"; locus "MER41_8q22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0305"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_8q22.3 ### chr8 rmsk gene 102165076 102166670 . - . gene_id "ERVLB4_8q22.3"; transcript_id "ERVLB4_8q22.3"; locus "ERVLB4_8q22.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0966"; model_cov "1179"; model_pct "20.6"; chr8 rmsk exon 102165076 102165461 1020 - . gene_id "ERVLB4_8q22.3"; transcript_id "ERVLB4_8q22.3"; locus "ERVLB4_8q22.3"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0966"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "19"; repStart "-4"; chr8 rmsk exon 102165479 102166670 4884 - . gene_id "ERVLB4_8q22.3"; transcript_id "ERVLB4_8q22.3"; locus "ERVLB4_8q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0966"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4535"; repStart "0"; ### ERV316A3_8q22.3a ### chr8 rmsk gene 102169665 102172028 . + . gene_id "ERV316A3_8q22.3a"; transcript_id "ERV316A3_8q22.3a"; locus "ERV316A3_8q22.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1604"; model_cov "2041"; model_pct "39.1"; chr8 rmsk exon 102169665 102171674 4237 + . gene_id "ERV316A3_8q22.3a"; transcript_id "ERV316A3_8q22.3a"; locus "ERV316A3_8q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1604"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "-1505"; repStart "1720"; chr8 rmsk exon 102171978 102172028 4237 + . gene_id "ERV316A3_8q22.3a"; transcript_id "ERV316A3_8q22.3a"; locus "ERV316A3_8q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1604"; repClass "LTR"; repEnd "3762"; repFamily "ERVL"; repLeft "-1464"; repStart "3722"; ### PRIMA4_8q22.3 ### chr8 rmsk gene 102986131 102986634 . - . gene_id "PRIMA4_8q22.3"; transcript_id "PRIMA4_8q22.3"; locus "PRIMA4_8q22.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0118"; model_cov "986"; model_pct "11.9"; chr8 rmsk exon 102986131 102986634 672 - . gene_id "PRIMA4_8q22.3"; transcript_id "PRIMA4_8q22.3"; locus "PRIMA4_8q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0118"; repClass "LTR"; repEnd "3783"; repFamily "ERV1"; repLeft "2797"; repStart "-4487"; ### HERVH_8q22.3a ### chr8 rmsk gene 103002078 103004589 . + . gene_id "HERVH_8q22.3a"; transcript_id "HERVH_8q22.3a"; locus "HERVH_8q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0715"; model_cov "1999"; model_pct "25.9"; chr8 rmsk exon 103002078 103002468 2584 + . gene_id "HERVH_8q22.3a"; transcript_id "HERVH_8q22.3a"; locus "HERVH_8q22.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0715"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 103002488 103003762 6757 + . gene_id "HERVH_8q22.3a"; transcript_id "HERVH_8q22.3a"; locus "HERVH_8q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0715"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4854"; chr8 rmsk exon 103003767 103004199 2818 + . gene_id "HERVH_8q22.3a"; transcript_id "HERVH_8q22.3a"; locus "HERVH_8q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0715"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr8 rmsk exon 103004200 103004589 2555 + . gene_id "HERVH_8q22.3a"; transcript_id "HERVH_8q22.3a"; locus "HERVH_8q22.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0715"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8q22.3b ### chr8 rmsk gene 103307913 103309882 . - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2129"; model_cov "1690"; model_pct "29.8"; chr8 rmsk exon 103307913 103308722 1502 - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2129"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "3413"; repStart "-1373"; chr8 rmsk exon 103308903 103309050 257 - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2129"; repClass "LTR"; repEnd "2737"; repFamily "ERVL"; repLeft "2574"; repStart "-2930"; chr8 rmsk exon 103309252 103309444 263 - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2129"; repClass "LTR"; repEnd "2584"; repFamily "ERVL"; repLeft "2362"; repStart "-3083"; chr8 rmsk exon 103309444 103309731 658 - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2129"; repClass "LTR"; repEnd "2305"; repFamily "ERVL"; repLeft "2000"; repStart "-3362"; chr8 rmsk exon 103309760 103309882 278 - . gene_id "ERVLE_8q22.3b"; transcript_id "ERVLE_8q22.3b"; locus "ERVLE_8q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2129"; repClass "LTR"; repEnd "1045"; repFamily "ERVL"; repLeft "926"; repStart "-4622"; ### ERVLE_8q22.3c ### chr8 rmsk gene 103391554 103392722 . + . gene_id "ERVLE_8q22.3c"; transcript_id "ERVLE_8q22.3c"; locus "ERVLE_8q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2130"; model_cov "595"; model_pct "10.5"; chr8 rmsk exon 103391554 103391698 2040 + . gene_id "ERVLE_8q22.3c"; transcript_id "ERVLE_8q22.3c"; locus "ERVLE_8q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2130"; repClass "LTR"; repEnd "4863"; repFamily "ERVL"; repLeft "-804"; repStart "4706"; chr8 rmsk exon 103392289 103392722 2040 + . gene_id "ERVLE_8q22.3c"; transcript_id "ERVLE_8q22.3c"; locus "ERVLE_8q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2130"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-365"; repStart "4864"; ### ERV316A3_8q22.3b ### chr8 rmsk gene 103846269 103848598 . - . gene_id "ERV316A3_8q22.3b"; transcript_id "ERV316A3_8q22.3b"; locus "ERV316A3_8q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1606"; model_cov "1916"; model_pct "36.7"; chr8 rmsk exon 103846269 103846455 575 - . gene_id "ERV316A3_8q22.3b"; transcript_id "ERV316A3_8q22.3b"; locus "ERV316A3_8q22.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1606"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "246"; repStart "-14"; chr8 rmsk exon 103846501 103846656 623 - . gene_id "ERV316A3_8q22.3b"; transcript_id "ERV316A3_8q22.3b"; locus "ERV316A3_8q22.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1606"; repClass "LTR"; repEnd "163"; repFamily "ERVL"; repLeft "5"; repStart "-293"; chr8 rmsk exon 103846811 103848598 3570 - . gene_id "ERV316A3_8q22.3b"; transcript_id "ERV316A3_8q22.3b"; locus "ERV316A3_8q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1606"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "2820"; repStart "-490"; ### ERV316A3_8q22.3c ### chr8 rmsk gene 103897037 103901527 . - . gene_id "ERV316A3_8q22.3c"; transcript_id "ERV316A3_8q22.3c"; locus "ERV316A3_8q22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1607"; model_cov "2743"; model_pct "52.5"; chr8 rmsk exon 103897037 103898641 3828 - . gene_id "ERV316A3_8q22.3c"; transcript_id "ERV316A3_8q22.3c"; locus "ERV316A3_8q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1607"; repClass "LTR"; repEnd "3795"; repFamily "ERVL"; repLeft "2157"; repStart "-1431"; chr8 rmsk exon 103900437 103901274 1816 - . gene_id "ERV316A3_8q22.3c"; transcript_id "ERV316A3_8q22.3c"; locus "ERV316A3_8q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1607"; repClass "LTR"; repEnd "2048"; repFamily "ERVL"; repLeft "1215"; repStart "-3178"; chr8 rmsk exon 103901267 103901527 659 - . gene_id "ERV316A3_8q22.3c"; transcript_id "ERV316A3_8q22.3c"; locus "ERV316A3_8q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1607"; repClass "LTR"; repEnd "880"; repFamily "ERVL"; repLeft "608"; repStart "-4346"; ### MER101_8q22.3a ### chr8 rmsk gene 104195921 104197177 . - . gene_id "MER101_8q22.3a"; transcript_id "MER101_8q22.3a"; locus "MER101_8q22.3a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0234"; model_cov "996"; model_pct "15.0"; chr8 rmsk exon 104195921 104197177 1822 - . gene_id "MER101_8q22.3a"; transcript_id "MER101_8q22.3a"; locus "MER101_8q22.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0234"; repClass "LTR"; repEnd "3016"; repFamily "ERV1"; repLeft "2020"; repStart "-3623"; ### MER101_8q22.3b ### chr8 rmsk gene 104197477 104198164 . - . gene_id "MER101_8q22.3b"; transcript_id "MER101_8q22.3b"; locus "MER101_8q22.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0235"; model_cov "689"; model_pct "10.4"; chr8 rmsk exon 104197477 104197641 1511 - . gene_id "MER101_8q22.3b"; transcript_id "MER101_8q22.3b"; locus "MER101_8q22.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0235"; repClass "LTR"; repEnd "3083"; repFamily "ERV1"; repLeft "2911"; repStart "-3556"; chr8 rmsk exon 104197657 104198164 1595 - . gene_id "MER101_8q22.3b"; transcript_id "MER101_8q22.3b"; locus "MER101_8q22.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0235"; repClass "LTR"; repEnd "-107"; repFamily "ERV1"; repLeft "-624"; repStart "-6746"; ### HERVH_8q22.3b ### chr8 rmsk gene 104285912 104292093 . + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0716"; model_cov "6870"; model_pct "89.1"; chr8 rmsk exon 104285912 104286339 3421 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 104286342 104289350 20778 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr8 rmsk exon 104289330 104289479 1052 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 104289470 104289972 3555 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 104289975 104291679 10470 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4488"; chr8 rmsk exon 104291680 104292093 3117 + . gene_id "HERVH_8q22.3b"; transcript_id "HERVH_8q22.3b"; locus "HERVH_8q22.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0716"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-17"; repStart "1"; ### ERVLE_8q23.1a ### chr8 rmsk gene 105245457 105247319 . + . gene_id "ERVLE_8q23.1a"; transcript_id "ERVLE_8q23.1a"; locus "ERVLE_8q23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2132"; model_cov "1043"; model_pct "18.4"; chr8 rmsk exon 105245457 105246304 1721 + . gene_id "ERVLE_8q23.1a"; transcript_id "ERVLE_8q23.1a"; locus "ERVLE_8q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2132"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "-888"; repStart "3846"; chr8 rmsk exon 105247207 105247319 323 + . gene_id "ERVLE_8q23.1a"; transcript_id "ERVLE_8q23.1a"; locus "ERVLE_8q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2132"; repClass "LTR"; repEnd "5572"; repFamily "ERVL"; repLeft "-95"; repStart "5462"; ### ERVLE_8q23.1b ### chr8 rmsk gene 106061145 106061731 . + . gene_id "ERVLE_8q23.1b"; transcript_id "ERVLE_8q23.1b"; locus "ERVLE_8q23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2133"; model_cov "592"; model_pct "10.4"; chr8 rmsk exon 106061145 106061731 768 + . gene_id "ERVLE_8q23.1b"; transcript_id "ERVLE_8q23.1b"; locus "ERVLE_8q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2133"; repClass "LTR"; repEnd "4096"; repFamily "ERVL"; repLeft "-1571"; repStart "3504"; ### ERV316A3_8q23.1a ### chr8 rmsk gene 106103648 106104556 . - . gene_id "ERV316A3_8q23.1a"; transcript_id "ERV316A3_8q23.1a"; locus "ERV316A3_8q23.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1608"; model_cov "916"; model_pct "17.5"; chr8 rmsk exon 106103648 106104556 3198 - . gene_id "ERV316A3_8q23.1a"; transcript_id "ERV316A3_8q23.1a"; locus "ERV316A3_8q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1608"; repClass "LTR"; repEnd "3064"; repFamily "ERVL"; repLeft "2148"; repStart "-2162"; ### ERVLE_8q23.1c ### chr8 rmsk gene 106253286 106254199 . - . gene_id "ERVLE_8q23.1c"; transcript_id "ERVLE_8q23.1c"; locus "ERVLE_8q23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2135"; model_cov "1048"; model_pct "18.5"; chr8 rmsk exon 106253286 106254199 1556 - . gene_id "ERVLE_8q23.1c"; transcript_id "ERVLE_8q23.1c"; locus "ERVLE_8q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2135"; repClass "LTR"; repEnd "2783"; repFamily "ERVL"; repLeft "1735"; repStart "-2884"; ### ERVLB4_8q23.1a ### chr8 rmsk gene 106401052 106405396 . - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0967"; model_cov "3582"; model_pct "62.7"; chr8 rmsk exon 106401052 106401357 1638 - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0967"; repClass "LTR"; repEnd "3921"; repFamily "ERVL"; repLeft "3614"; repStart "-1793"; chr8 rmsk exon 106401353 106402808 14030 - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0967"; repClass "LTR"; repEnd "3346"; repFamily "ERVL"; repLeft "1769"; repStart "-2368"; chr8 rmsk exon 106403084 106404713 14030 - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0967"; repClass "LTR"; repEnd "1768"; repFamily "ERVL"; repLeft "226"; repStart "-3946"; chr8 rmsk exon 106404981 106405139 14030 - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0967"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "69"; repStart "-5489"; chr8 rmsk exon 106405244 106405396 812 - . gene_id "ERVLB4_8q23.1a"; transcript_id "ERVLB4_8q23.1a"; locus "ERVLB4_8q23.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0967"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "274"; repStart "-81"; ### HERV9_8q23.1 ### chr8 rmsk gene 106788709 106794107 . + . gene_id "HERV9_8q23.1"; transcript_id "HERV9_8q23.1"; locus "HERV9_8q23.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0112"; model_cov "4611"; model_pct "54.7"; chr8 rmsk exon 106788709 106789136 2854 + . gene_id "HERV9_8q23.1"; transcript_id "HERV9_8q23.1"; locus "HERV9_8q23.1"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0112"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "-229"; repStart "1"; chr8 rmsk exon 106789137 106792396 18525 + . gene_id "HERV9_8q23.1"; transcript_id "HERV9_8q23.1"; locus "HERV9_8q23.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0112"; repClass "LTR"; repEnd "3390"; repFamily "ERV1"; repLeft "-5046"; repStart "3"; chr8 rmsk exon 106792391 106793618 10248 + . gene_id "HERV9_8q23.1"; transcript_id "HERV9_8q23.1"; locus "HERV9_8q23.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0112"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7212"; chr8 rmsk exon 106793619 106794107 3255 + . gene_id "HERV9_8q23.1"; transcript_id "HERV9_8q23.1"; locus "HERV9_8q23.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0112"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "-236"; repStart "1"; ### HERV30_8q23.1a ### chr8 rmsk gene 107597395 107601899 . - . gene_id "HERV30_8q23.1a"; transcript_id "HERV30_8q23.1a"; locus "HERV30_8q23.1a"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0012"; model_cov "3782"; model_pct "45.8"; chr8 rmsk exon 107597395 107598100 4770 - . gene_id "HERV30_8q23.1a"; transcript_id "HERV30_8q23.1a"; locus "HERV30_8q23.1a"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0012"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 107598101 107599853 10823 - . gene_id "HERV30_8q23.1a"; transcript_id "HERV30_8q23.1a"; locus "HERV30_8q23.1a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0012"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "6509"; repStart "0"; chr8 rmsk exon 107599882 107599926 259 - . gene_id "HERV30_8q23.1a"; transcript_id "HERV30_8q23.1a"; locus "HERV30_8q23.1a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0012"; repClass "LTR"; repEnd "6158"; repFamily "ERV1"; repLeft "6114"; repStart "-2099"; chr8 rmsk exon 107599928 107601899 46108 - . gene_id "HERV30_8q23.1a"; transcript_id "HERV30_8q23.1a"; locus "HERV30_8q23.1a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0012"; repClass "LTR"; repEnd "6509"; repFamily "ERV1"; repLeft "4519"; repStart "-1748"; ### HERV30_8q23.1b ### chr8 rmsk gene 107601946 107607129 . - . gene_id "HERV30_8q23.1b"; transcript_id "HERV30_8q23.1b"; locus "HERV30_8q23.1b"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0013"; model_cov "4517"; model_pct "54.7"; chr8 rmsk exon 107601946 107606418 46108 - . gene_id "HERV30_8q23.1b"; transcript_id "HERV30_8q23.1b"; locus "HERV30_8q23.1b"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0013"; repClass "LTR"; repEnd "6509"; repFamily "ERV1"; repLeft "1992"; repStart "-1748"; chr8 rmsk exon 107606419 107607129 4677 - . gene_id "HERV30_8q23.1b"; transcript_id "HERV30_8q23.1b"; locus "HERV30_8q23.1b"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0013"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_8q23.1b ### chr8 rmsk gene 107858481 107860278 . + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0968"; model_cov "1141"; model_pct "20.0"; chr8 rmsk exon 107858481 107858711 603 + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0968"; repClass "LTR"; repEnd "2673"; repFamily "ERVL"; repLeft "-3041"; repStart "2422"; chr8 rmsk exon 107858719 107859144 1828 + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0968"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-51"; repStart "1"; chr8 rmsk exon 107859316 107859359 261 + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0968"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "471"; chr8 rmsk exon 107859361 107859964 1002 + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0968"; repClass "LTR"; repEnd "3315"; repFamily "ERVL"; repLeft "-2399"; repStart "2677"; chr8 rmsk exon 107860104 107860278 474 + . gene_id "ERVLB4_8q23.1b"; transcript_id "ERVLB4_8q23.1b"; locus "ERVLB4_8q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0968"; repClass "LTR"; repEnd "3749"; repFamily "ERVL"; repLeft "-1965"; repStart "3497"; ### ERVLB4_8q23.1c ### chr8 rmsk gene 107867189 107868097 . + . gene_id "ERVLB4_8q23.1c"; transcript_id "ERVLB4_8q23.1c"; locus "ERVLB4_8q23.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0969"; model_cov "822"; model_pct "14.4"; chr8 rmsk exon 107867189 107867416 385 + . gene_id "ERVLB4_8q23.1c"; transcript_id "ERVLB4_8q23.1c"; locus "ERVLB4_8q23.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0969"; repClass "LTR"; repEnd "4251"; repFamily "ERVL"; repLeft "-1463"; repStart "3995"; chr8 rmsk exon 107867576 107868097 1213 + . gene_id "ERVLB4_8q23.1c"; transcript_id "ERVLB4_8q23.1c"; locus "ERVLB4_8q23.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0969"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "-703"; repStart "4445"; ### HUERSP1_8q23.1 ### chr8 rmsk gene 107915261 107915931 . + . gene_id "HUERSP1_8q23.1"; transcript_id "HUERSP1_8q23.1"; locus "HUERSP1_8q23.1"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0104"; model_cov "769"; model_pct "12.3"; chr8 rmsk exon 107915261 107915755 2619 + . gene_id "HUERSP1_8q23.1"; transcript_id "HUERSP1_8q23.1"; locus "HUERSP1_8q23.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0104"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "-5464"; repStart "202"; chr8 rmsk exon 107915756 107915931 953 + . gene_id "HUERSP1_8q23.1"; transcript_id "HUERSP1_8q23.1"; locus "HUERSP1_8q23.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0104"; repClass "LTR"; repEnd "1100"; repFamily "ERV1"; repLeft "-5163"; repStart "928"; ### MER41_8q23.1 ### chr8 rmsk gene 107915901 107919264 . + . gene_id "MER41_8q23.1"; transcript_id "MER41_8q23.1"; locus "MER41_8q23.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0307"; model_cov "3049"; model_pct "51.3"; chr8 rmsk exon 107915901 107917203 13965 + . gene_id "MER41_8q23.1"; transcript_id "MER41_8q23.1"; locus "MER41_8q23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0307"; repClass "LTR"; repEnd "3922"; repFamily "ERV1"; repLeft "-2024"; repStart "2608"; chr8 rmsk exon 107917459 107918929 13965 + . gene_id "MER41_8q23.1"; transcript_id "MER41_8q23.1"; locus "MER41_8q23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0307"; repClass "LTR"; repEnd "5417"; repFamily "ERV1"; repLeft "-529"; repStart "3923"; chr8 rmsk exon 107919021 107919264 1421 + . gene_id "MER41_8q23.1"; transcript_id "MER41_8q23.1"; locus "MER41_8q23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0307"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5705"; ### ERVLE_8q23.1d ### chr8 rmsk gene 108091153 108091699 . - . gene_id "ERVLE_8q23.1d"; transcript_id "ERVLE_8q23.1d"; locus "ERVLE_8q23.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2137"; model_cov "570"; model_pct "10.1"; chr8 rmsk exon 108091153 108091699 1977 - . gene_id "ERVLE_8q23.1d"; transcript_id "ERVLE_8q23.1d"; locus "ERVLE_8q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2137"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "1554"; repStart "-3543"; ### ERV316A3_8q23.1b ### chr8 rmsk gene 108953759 108956489 . - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1609"; model_cov "1851"; model_pct "35.4"; chr8 rmsk exon 108953759 108954124 693 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "1"; repStart "-21"; chr8 rmsk exon 108954125 108954246 855 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5101"; repStart "0"; chr8 rmsk exon 108954557 108954670 855 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "5100"; repFamily "ERVL"; repLeft "4987"; repStart "-126"; chr8 rmsk exon 108954686 108955084 2780 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "4920"; repFamily "ERVL"; repLeft "4499"; repStart "-306"; chr8 rmsk exon 108955116 108955678 2780 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "3946"; repStart "-728"; chr8 rmsk exon 108955890 108956489 905 - . gene_id "ERV316A3_8q23.1b"; transcript_id "ERV316A3_8q23.1b"; locus "ERV316A3_8q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1609"; repClass "LTR"; repEnd "3544"; repFamily "ERVL"; repLeft "2904"; repStart "-1682"; ### ERVLB4_8q23.1d ### chr8 rmsk gene 109174130 109176547 . - . gene_id "ERVLB4_8q23.1d"; transcript_id "ERVLB4_8q23.1d"; locus "ERVLB4_8q23.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0970"; model_cov "2656"; model_pct "46.5"; chr8 rmsk exon 109174130 109175541 4273 - . gene_id "ERVLB4_8q23.1d"; transcript_id "ERVLB4_8q23.1d"; locus "ERVLB4_8q23.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0970"; repClass "LTR"; repEnd "4446"; repFamily "ERVL"; repLeft "2909"; repStart "-1268"; chr8 rmsk exon 109175542 109176547 3255 - . gene_id "ERVLB4_8q23.1d"; transcript_id "ERVLB4_8q23.1d"; locus "ERVLB4_8q23.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0970"; repClass "LTR"; repEnd "2510"; repFamily "ERVL"; repLeft "1391"; repStart "-3204"; ### ERVLE_8q23.1e ### chr8 rmsk gene 109183112 109184042 . - . gene_id "ERVLE_8q23.1e"; transcript_id "ERVLE_8q23.1e"; locus "ERVLE_8q23.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2139"; model_cov "993"; model_pct "17.5"; chr8 rmsk exon 109183112 109183362 416 - . gene_id "ERVLE_8q23.1e"; transcript_id "ERVLE_8q23.1e"; locus "ERVLE_8q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2139"; repClass "LTR"; repEnd "5286"; repFamily "ERVL"; repLeft "4949"; repStart "-381"; chr8 rmsk exon 109183411 109184042 1753 - . gene_id "ERVLE_8q23.1e"; transcript_id "ERVLE_8q23.1e"; locus "ERVLE_8q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2139"; repClass "LTR"; repEnd "3889"; repFamily "ERVL"; repLeft "3233"; repStart "-1778"; ### MER61_8q23.1a ### chr8 rmsk gene 109210785 109211735 . + . gene_id "MER61_8q23.1a"; transcript_id "MER61_8q23.1a"; locus "MER61_8q23.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0234"; model_cov "699"; model_pct "13.4"; chr8 rmsk exon 109210785 109211108 1725 + . gene_id "MER61_8q23.1a"; transcript_id "MER61_8q23.1a"; locus "MER61_8q23.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0234"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 109211109 109211735 2228 + . gene_id "MER61_8q23.1a"; transcript_id "MER61_8q23.1a"; locus "MER61_8q23.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0234"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "1"; ### MER61_8q23.1b ### chr8 rmsk gene 109219471 109223779 . + . gene_id "MER61_8q23.1b"; transcript_id "MER61_8q23.1b"; locus "MER61_8q23.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0235"; model_cov "3883"; model_pct "74.4"; chr8 rmsk exon 109219471 109221768 22676 + . gene_id "MER61_8q23.1b"; transcript_id "MER61_8q23.1b"; locus "MER61_8q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0235"; repClass "LTR"; repEnd "3784"; repFamily "ERV1"; repLeft "-1433"; repStart "1333"; chr8 rmsk exon 109222060 109223478 22676 + . gene_id "MER61_8q23.1b"; transcript_id "MER61_8q23.1b"; locus "MER61_8q23.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0235"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3785"; chr8 rmsk exon 109223479 109223779 1665 + . gene_id "MER61_8q23.1b"; transcript_id "MER61_8q23.1b"; locus "MER61_8q23.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0235"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "-16"; repStart "1"; ### HERVH_8q23.1 ### chr8 rmsk gene 109301077 109307459 . + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0717"; model_cov "5919"; model_pct "76.7"; chr8 rmsk exon 109301077 109301497 2869 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 109301498 109304035 12281 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr8 rmsk exon 109304036 109304267 1418 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3357"; chr8 rmsk exon 109304262 109305715 8407 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4865"; chr8 rmsk exon 109305712 109306456 4563 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5270"; chr8 rmsk exon 109306450 109307033 3370 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr8 rmsk exon 109307034 109307459 2840 + . gene_id "HERVH_8q23.1"; transcript_id "HERVH_8q23.1"; locus "HERVH_8q23.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0717"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_8q23.1f ### chr8 rmsk gene 109378678 109380056 . + . gene_id "ERVLE_8q23.1f"; transcript_id "ERVLE_8q23.1f"; locus "ERVLE_8q23.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2140"; model_cov "1296"; model_pct "22.9"; chr8 rmsk exon 109378678 109380056 1776 + . gene_id "ERVLE_8q23.1f"; transcript_id "ERVLE_8q23.1f"; locus "ERVLE_8q23.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2140"; repClass "LTR"; repEnd "5422"; repFamily "ERVL"; repLeft "-245"; repStart "4126"; ### ERVLB4_8q23.1e ### chr8 rmsk gene 109466977 109469251 . - . gene_id "ERVLB4_8q23.1e"; transcript_id "ERVLB4_8q23.1e"; locus "ERVLB4_8q23.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0971"; model_cov "1149"; model_pct "20.1"; chr8 rmsk exon 109466977 109467384 1168 - . gene_id "ERVLB4_8q23.1e"; transcript_id "ERVLB4_8q23.1e"; locus "ERVLB4_8q23.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0971"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "2280"; repStart "-3032"; chr8 rmsk exon 109467489 109467578 352 - . gene_id "ERVLB4_8q23.1e"; transcript_id "ERVLB4_8q23.1e"; locus "ERVLB4_8q23.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0971"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "2133"; repStart "-3492"; chr8 rmsk exon 109468575 109468815 762 - . gene_id "ERVLB4_8q23.1e"; transcript_id "ERVLB4_8q23.1e"; locus "ERVLB4_8q23.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0971"; repClass "LTR"; repEnd "2141"; repFamily "ERVL"; repLeft "1903"; repStart "-3573"; chr8 rmsk exon 109468831 109469251 887 - . gene_id "ERVLB4_8q23.1e"; transcript_id "ERVLB4_8q23.1e"; locus "ERVLB4_8q23.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0971"; repClass "LTR"; repEnd "1777"; repFamily "ERVL"; repLeft "1357"; repStart "-3937"; ### ERV316A3_8q23.1c ### chr8 rmsk gene 109499764 109503023 . - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1611"; model_cov "1670"; model_pct "32.0"; chr8 rmsk exon 109499764 109499998 480 - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1611"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "147"; repStart "-85"; chr8 rmsk exon 109500174 109500404 3458 - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1611"; repClass "LTR"; repEnd "5168"; repFamily "ERVL"; repLeft "4939"; repStart "-58"; chr8 rmsk exon 109500700 109502047 3458 - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1611"; repClass "LTR"; repEnd "4938"; repFamily "ERVL"; repLeft "3538"; repStart "-288"; chr8 rmsk exon 109502089 109502124 3458 - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1611"; repClass "LTR"; repEnd "3537"; repFamily "ERVL"; repLeft "3496"; repStart "-1689"; chr8 rmsk exon 109502688 109503023 1062 - . gene_id "ERV316A3_8q23.1c"; transcript_id "ERV316A3_8q23.1c"; locus "ERV316A3_8q23.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1611"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "97"; repStart "-22"; ### ERVLB4_8q23.2a ### chr8 rmsk gene 109795394 109796627 . - . gene_id "ERVLB4_8q23.2a"; transcript_id "ERVLB4_8q23.2a"; locus "ERVLB4_8q23.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0972"; model_cov "1079"; model_pct "18.9"; chr8 rmsk exon 109795394 109796240 2011 - . gene_id "ERVLB4_8q23.2a"; transcript_id "ERVLB4_8q23.2a"; locus "ERVLB4_8q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0972"; repClass "LTR"; repEnd "3514"; repFamily "ERVL"; repLeft "2611"; repStart "-2200"; chr8 rmsk exon 109796459 109796627 506 - . gene_id "ERVLB4_8q23.2a"; transcript_id "ERVLB4_8q23.2a"; locus "ERVLB4_8q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0972"; repClass "LTR"; repEnd "2322"; repFamily "ERVL"; repLeft "2146"; repStart "-3392"; ### ERVLB4_8q23.2b ### chr8 rmsk gene 109796685 109797473 . - . gene_id "ERVLB4_8q23.2b"; transcript_id "ERVLB4_8q23.2b"; locus "ERVLB4_8q23.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0973"; model_cov "827"; model_pct "14.5"; chr8 rmsk exon 109796685 109797473 781 - . gene_id "ERVLB4_8q23.2b"; transcript_id "ERVLB4_8q23.2b"; locus "ERVLB4_8q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0973"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "1554"; repStart "-3333"; ### ERV316A3_8q23.2a ### chr8 rmsk gene 109865243 109868041 . + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1612"; model_cov "2175"; model_pct "41.6"; chr8 rmsk exon 109865243 109865677 1373 + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1612"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 109865679 109866256 1592 + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1612"; repClass "LTR"; repEnd "593"; repFamily "ERVL"; repLeft "-4633"; repStart "7"; chr8 rmsk exon 109866289 109866674 1217 + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1612"; repClass "LTR"; repEnd "1080"; repFamily "ERVL"; repLeft "-4146"; repStart "674"; chr8 rmsk exon 109866670 109867834 2995 + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1612"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4043"; chr8 rmsk exon 109867837 109868041 743 + . gene_id "ERV316A3_8q23.2a"; transcript_id "ERV316A3_8q23.2a"; locus "ERV316A3_8q23.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1612"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "-254"; repStart "4"; ### HERVL_8q23.2a ### chr8 rmsk gene 109938671 109944934 . - . gene_id "HERVL_8q23.2a"; transcript_id "HERVL_8q23.2a"; locus "HERVL_8q23.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0776"; model_cov "5264"; model_pct "93.1"; chr8 rmsk exon 109938671 109939036 2552 - . gene_id "HERVL_8q23.2a"; transcript_id "HERVL_8q23.2a"; locus "HERVL_8q23.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0776"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "-109"; repStart "-77"; chr8 rmsk exon 109939037 109943518 32091 - . gene_id "HERVL_8q23.2a"; transcript_id "HERVL_8q23.2a"; locus "HERVL_8q23.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0776"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1389"; repStart "0"; chr8 rmsk exon 109943519 109944508 7518 - . gene_id "HERVL_8q23.2a"; transcript_id "HERVL_8q23.2a"; locus "HERVL_8q23.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0776"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "25"; repStart "-4630"; chr8 rmsk exon 109944558 109944934 2601 - . gene_id "HERVL_8q23.2a"; transcript_id "HERVL_8q23.2a"; locus "HERVL_8q23.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0776"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; ### HUERSP2_8q23.2 ### chr8 rmsk gene 110059854 110064451 . + . gene_id "HUERSP2_8q23.2"; transcript_id "HUERSP2_8q23.2"; locus "HUERSP2_8q23.2"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0072"; model_cov "2884"; model_pct "93.4"; chr8 rmsk exon 110059854 110060633 5106 + . gene_id "HUERSP2_8q23.2"; transcript_id "HUERSP2_8q23.2"; locus "HUERSP2_8q23.2"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0072"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr8 rmsk exon 110060781 110063666 16870 + . gene_id "HUERSP2_8q23.2"; transcript_id "HUERSP2_8q23.2"; locus "HUERSP2_8q23.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0072"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "204"; chr8 rmsk exon 110063667 110064451 4944 + . gene_id "HUERSP2_8q23.2"; transcript_id "HUERSP2_8q23.2"; locus "HUERSP2_8q23.2"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0072"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_8q23.2b ### chr8 rmsk gene 110395653 110397219 . + . gene_id "ERV316A3_8q23.2b"; transcript_id "ERV316A3_8q23.2b"; locus "ERV316A3_8q23.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1614"; model_cov "1602"; model_pct "30.7"; chr8 rmsk exon 110395653 110397219 1911 + . gene_id "ERV316A3_8q23.2b"; transcript_id "ERV316A3_8q23.2b"; locus "ERV316A3_8q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1614"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "-271"; repStart "3353"; ### ERVL_8q23.2a ### chr8 rmsk gene 110435665 110442761 . - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0252"; model_cov "2568"; model_pct "44.6"; chr8 rmsk exon 110435665 110436380 724 - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0252"; repClass "LTR"; repEnd "5615"; repFamily "ERVL"; repLeft "4898"; repStart "-142"; chr8 rmsk exon 110436424 110436538 293 - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0252"; repClass "LTR"; repEnd "4840"; repFamily "ERVL"; repLeft "4726"; repStart "-917"; chr8 rmsk exon 110438292 110438599 319 - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0252"; repClass "LTR"; repEnd "3847"; repFamily "ERVL"; repLeft "3543"; repStart "-1910"; chr8 rmsk exon 110439023 110440092 1623 - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0252"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "1881"; repStart "-2858"; chr8 rmsk exon 110442371 110442761 393 - . gene_id "ERVL_8q23.2a"; transcript_id "ERVL_8q23.2a"; locus "ERVL_8q23.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0252"; repClass "LTR"; repEnd "1853"; repFamily "ERVL"; repLeft "1438"; repStart "-3904"; ### ERVLE_8q23.2a ### chr8 rmsk gene 110546540 110548971 . - . gene_id "ERVLE_8q23.2a"; transcript_id "ERVLE_8q23.2a"; locus "ERVLE_8q23.2a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2141"; model_cov "1976"; model_pct "34.9"; chr8 rmsk exon 110546540 110546775 586 - . gene_id "ERVLE_8q23.2a"; transcript_id "ERVLE_8q23.2a"; locus "ERVLE_8q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2141"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "4601"; repStart "-832"; chr8 rmsk exon 110546840 110548489 6049 - . gene_id "ERVLE_8q23.2a"; transcript_id "ERVLE_8q23.2a"; locus "ERVLE_8q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2141"; repClass "LTR"; repEnd "4538"; repFamily "ERVL"; repLeft "2796"; repStart "-1129"; chr8 rmsk exon 110548597 110548971 867 - . gene_id "ERVLE_8q23.2a"; transcript_id "ERVLE_8q23.2a"; locus "ERVLE_8q23.2a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2141"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "1"; repStart "-280"; ### HUERSP3_8q23.2 ### chr8 rmsk gene 110829647 110835968 . - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0113"; model_cov "4725"; model_pct "53.0"; chr8 rmsk exon 110829647 110830298 4157 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 110830299 110830577 1235 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8701"; repStart "-1"; chr8 rmsk exon 110831052 110831144 424 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "6973"; repFamily "ERV1"; repLeft "6882"; repStart "-1946"; chr8 rmsk exon 110831163 110831913 4470 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6163"; repStart "-2007"; chr8 rmsk exon 110831900 110832559 4478 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "4901"; repStart "-3342"; chr8 rmsk exon 110832561 110832699 816 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chr8 rmsk exon 110832693 110834925 7787 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "765"; repStart "-5635"; chr8 rmsk exon 110834937 110835202 1129 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "2024"; repFamily "ERV1"; repLeft "1752"; repStart "-6895"; chr8 rmsk exon 110835203 110835260 406 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr8 rmsk exon 110835304 110835968 3995 - . gene_id "HUERSP3_8q23.2"; transcript_id "HUERSP3_8q23.2"; locus "HUERSP3_8q23.2"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0113"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_8q23.2b ### chr8 rmsk gene 110855277 110856345 . + . gene_id "ERVLE_8q23.2b"; transcript_id "ERVLE_8q23.2b"; locus "ERVLE_8q23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2143"; model_cov "670"; model_pct "11.8"; chr8 rmsk exon 110855277 110855460 326 + . gene_id "ERVLE_8q23.2b"; transcript_id "ERVLE_8q23.2b"; locus "ERVLE_8q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2143"; repClass "LTR"; repEnd "1633"; repFamily "ERVL"; repLeft "-4034"; repStart "1459"; chr8 rmsk exon 110855839 110856150 783 + . gene_id "ERVLE_8q23.2b"; transcript_id "ERVLE_8q23.2b"; locus "ERVLE_8q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2143"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3642"; repStart "1699"; chr8 rmsk exon 110856175 110856345 652 + . gene_id "ERVLE_8q23.2b"; transcript_id "ERVLE_8q23.2b"; locus "ERVLE_8q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2143"; repClass "LTR"; repEnd "2245"; repFamily "ERVL"; repLeft "-3422"; repStart "2075"; ### HERVL_8q23.2b ### chr8 rmsk gene 110880851 110886992 . + . gene_id "HERVL_8q23.2b"; transcript_id "HERVL_8q23.2b"; locus "HERVL_8q23.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0777"; model_cov "5653"; model_pct "100.0"; chr8 rmsk exon 110880851 110880870 270 + . gene_id "HERVL_8q23.2b"; transcript_id "HERVL_8q23.2b"; locus "HERVL_8q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0777"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "391"; chr8 rmsk exon 110880941 110880982 270 + . gene_id "HERVL_8q23.2b"; transcript_id "HERVL_8q23.2b"; locus "HERVL_8q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0777"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "404"; chr8 rmsk exon 110880983 110886547 42206 + . gene_id "HERVL_8q23.2b"; transcript_id "HERVL_8q23.2b"; locus "HERVL_8q23.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0777"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 110886548 110886992 2706 + . gene_id "HERVL_8q23.2b"; transcript_id "HERVL_8q23.2b"; locus "HERVL_8q23.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0777"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_8q23.2 ### chr8 rmsk gene 110890282 110894968 . - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0091"; model_cov "3945"; model_pct "65.2"; chr8 rmsk exon 110890282 110891019 4608 - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0091"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "4394"; repStart "-926"; chr8 rmsk exon 110891022 110891804 3449 - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0091"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr8 rmsk exon 110891804 110893463 9989 - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0091"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "712"; repStart "-3595"; chr8 rmsk exon 110893741 110894359 2558 - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0091"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "1"; repStart "-5427"; chr8 rmsk exon 110894390 110894968 2738 - . gene_id "HERVL18_8q23.2"; transcript_id "HERVL18_8q23.2"; locus "HERVL18_8q23.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0091"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_8q23.2b ### chr8 rmsk gene 110936879 110938055 . - . gene_id "ERVL_8q23.2b"; transcript_id "ERVL_8q23.2b"; locus "ERVL_8q23.2b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0253"; model_cov "838"; model_pct "14.6"; chr8 rmsk exon 110936879 110937381 1403 - . gene_id "ERVL_8q23.2b"; transcript_id "ERVL_8q23.2b"; locus "ERVL_8q23.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0253"; repClass "LTR"; repEnd "3850"; repFamily "ERVL"; repLeft "3329"; repStart "-1907"; chr8 rmsk exon 110937755 110938055 1403 - . gene_id "ERVL_8q23.2b"; transcript_id "ERVL_8q23.2b"; locus "ERVL_8q23.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0253"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "3011"; repStart "-2429"; ### ERV316A3_8q23.2c ### chr8 rmsk gene 111012230 111013544 . - . gene_id "ERV316A3_8q23.2c"; transcript_id "ERV316A3_8q23.2c"; locus "ERV316A3_8q23.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1615"; model_cov "891"; model_pct "17.0"; chr8 rmsk exon 111012230 111012670 622 - . gene_id "ERV316A3_8q23.2c"; transcript_id "ERV316A3_8q23.2c"; locus "ERV316A3_8q23.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1615"; repClass "LTR"; repEnd "3701"; repFamily "ERVL"; repLeft "3255"; repStart "-1525"; chr8 rmsk exon 111013097 111013544 730 - . gene_id "ERV316A3_8q23.2c"; transcript_id "ERV316A3_8q23.2c"; locus "ERV316A3_8q23.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1615"; repClass "LTR"; repEnd "2684"; repFamily "ERVL"; repLeft "2239"; repStart "-2542"; ### ERVLE_8q23.2c ### chr8 rmsk gene 111057346 111060578 . + . gene_id "ERVLE_8q23.2c"; transcript_id "ERVLE_8q23.2c"; locus "ERVLE_8q23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2145"; model_cov "2552"; model_pct "45.0"; chr8 rmsk exon 111057346 111057582 370 + . gene_id "ERVLE_8q23.2c"; transcript_id "ERVLE_8q23.2c"; locus "ERVLE_8q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2145"; repClass "LTR"; repEnd "1540"; repFamily "ERVL"; repLeft "-4127"; repStart "1307"; chr8 rmsk exon 111058284 111060578 1503 + . gene_id "ERVLE_8q23.2c"; transcript_id "ERVLE_8q23.2c"; locus "ERVLE_8q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2145"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "-1374"; repStart "1974"; ### ERVLB4_8q23.3a ### chr8 rmsk gene 111159459 111164342 . + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0975"; model_cov "3172"; model_pct "55.5"; chr8 rmsk exon 111159459 111159535 332 + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0975"; repClass "LTR"; repEnd "1121"; repFamily "ERVL"; repLeft "-4593"; repStart "1043"; chr8 rmsk exon 111159802 111160159 727 + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0975"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "17"; chr8 rmsk exon 111160164 111162483 5315 + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0975"; repClass "LTR"; repEnd "2536"; repFamily "ERVL"; repLeft "-3178"; repStart "5"; chr8 rmsk exon 111163076 111163517 5315 + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0975"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2732"; repStart "2537"; chr8 rmsk exon 111164224 111164342 575 + . gene_id "ERVLB4_8q23.3a"; transcript_id "ERVLB4_8q23.3a"; locus "ERVLB4_8q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0975"; repClass "LTR"; repEnd "3109"; repFamily "ERVL"; repLeft "-2605"; repStart "2991"; ### MER4_8q23.3a ### chr8 rmsk gene 111227490 111228968 . + . gene_id "MER4_8q23.3a"; transcript_id "MER4_8q23.3a"; locus "MER4_8q23.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0433"; model_cov "1091"; model_pct "16.5"; chr8 rmsk exon 111227490 111227934 2857 + . gene_id "MER4_8q23.3a"; transcript_id "MER4_8q23.3a"; locus "MER4_8q23.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0433"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr8 rmsk exon 111227937 111228514 2765 + . gene_id "MER4_8q23.3a"; transcript_id "MER4_8q23.3a"; locus "MER4_8q23.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0433"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr8 rmsk exon 111228502 111228580 267 + . gene_id "MER4_8q23.3a"; transcript_id "MER4_8q23.3a"; locus "MER4_8q23.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0433"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr8 rmsk exon 111228655 111228968 1144 + . gene_id "MER4_8q23.3a"; transcript_id "MER4_8q23.3a"; locus "MER4_8q23.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0433"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-4163"; repStart "2112"; ### MER4_8q23.3b ### chr8 rmsk gene 111229011 111235713 . + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0434"; model_cov "5365"; model_pct "81.3"; chr8 rmsk exon 111229011 111229675 4159 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "29"; chr8 rmsk exon 111229698 111229973 1565 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-5560"; repStart "764"; chr8 rmsk exon 111229983 111230694 4340 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1756"; chr8 rmsk exon 111230938 111231368 2875 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "3178"; repFamily "ERV1"; repLeft "-3420"; repStart "2737"; chr8 rmsk exon 111231601 111231975 2875 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "3593"; repFamily "ERV1"; repLeft "-3005"; repStart "3179"; chr8 rmsk exon 111232534 111232609 2875 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "3594"; chr8 rmsk exon 111232615 111235263 15834 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0434"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3843"; chr8 rmsk exon 111235269 111235713 2936 + . gene_id "MER4_8q23.3b"; transcript_id "MER4_8q23.3b"; locus "MER4_8q23.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0434"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_8q23.3h ### chr8 rmsk gene 111238209 111242759 . + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; category "tandem*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1619"; model_cov "2306"; model_pct "44.1"; chr8 rmsk exon 111238209 111238738 1752 + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1619"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "4685"; chr8 rmsk exon 111239262 111239701 1322 + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1619"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "3"; chr8 rmsk exon 111239741 111241080 1713 + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1619"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1456"; repStart "2441"; chr8 rmsk exon 111241103 111242076 1425 + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1619"; repClass "LTR"; repEnd "5000"; repFamily "ERVL"; repLeft "-226"; repStart "4023"; chr8 rmsk exon 111242340 111242759 1092 + . gene_id "ERV316A3_8q23.3h"; transcript_id "ERV316A3_8q23.3h"; locus "ERV316A3_8q23.3h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1619"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "21"; ### ERV316A3_8q23.3a ### chr8 rmsk gene 111258299 111262923 . - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1620"; model_cov "2944"; model_pct "56.3"; chr8 rmsk exon 111258299 111258752 1664 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 111258753 111259202 1243 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4766"; repStart "0"; chr8 rmsk exon 111259689 111260160 1183 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "4770"; repFamily "ERVL"; repLeft "4284"; repStart "-456"; chr8 rmsk exon 111260147 111260848 1753 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "4035"; repFamily "ERVL"; repLeft "3312"; repStart "-1191"; chr8 rmsk exon 111260820 111261299 1039 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "2912"; repFamily "ERVL"; repLeft "2390"; repStart "-2314"; chr8 rmsk exon 111261509 111261984 954 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "1532"; repFamily "ERVL"; repLeft "1048"; repStart "-3694"; chr8 rmsk exon 111262116 111262376 600 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "580"; repFamily "ERVL"; repLeft "311"; repStart "-4646"; chr8 rmsk exon 111262500 111262923 787 - . gene_id "ERV316A3_8q23.3a"; transcript_id "ERV316A3_8q23.3a"; locus "ERV316A3_8q23.3a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1620"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "1"; repStart "-17"; ### ERVLE_8q23.3a ### chr8 rmsk gene 111372041 111372544 . + . gene_id "ERVLE_8q23.3a"; transcript_id "ERVLE_8q23.3a"; locus "ERVLE_8q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2146"; model_cov "661"; model_pct "11.7"; chr8 rmsk exon 111372041 111372544 504 + . gene_id "ERVLE_8q23.3a"; transcript_id "ERVLE_8q23.3a"; locus "ERVLE_8q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2146"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2582"; repStart "2424"; ### ERV316A3_8q23.3b ### chr8 rmsk gene 111914376 111915950 . + . gene_id "ERV316A3_8q23.3b"; transcript_id "ERV316A3_8q23.3b"; locus "ERV316A3_8q23.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1622"; model_cov "1615"; model_pct "30.9"; chr8 rmsk exon 111914376 111915294 2438 + . gene_id "ERV316A3_8q23.3b"; transcript_id "ERV316A3_8q23.3b"; locus "ERV316A3_8q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1622"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "-3740"; repStart "533"; chr8 rmsk exon 111915286 111915950 1957 + . gene_id "ERV316A3_8q23.3b"; transcript_id "ERV316A3_8q23.3b"; locus "ERV316A3_8q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1622"; repClass "LTR"; repEnd "4851"; repFamily "ERVL"; repLeft "-375"; repStart "4189"; ### ERVLE_8q23.3b ### chr8 rmsk gene 111956745 111958997 . + . gene_id "ERVLE_8q23.3b"; transcript_id "ERVLE_8q23.3b"; locus "ERVLE_8q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2151"; model_cov "1989"; model_pct "35.1"; chr8 rmsk exon 111956745 111958543 4719 + . gene_id "ERVLE_8q23.3b"; transcript_id "ERVLE_8q23.3b"; locus "ERVLE_8q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2151"; repClass "LTR"; repEnd "3841"; repFamily "ERVL"; repLeft "-1826"; repStart "2003"; chr8 rmsk exon 111958851 111958997 2324 + . gene_id "ERVLE_8q23.3b"; transcript_id "ERVLE_8q23.3b"; locus "ERVLE_8q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2151"; repClass "LTR"; repEnd "3993"; repFamily "ERVL"; repLeft "-1674"; repStart "3842"; ### ERVLE_8q23.3c ### chr8 rmsk gene 112060576 112063846 . - . gene_id "ERVLE_8q23.3c"; transcript_id "ERVLE_8q23.3c"; locus "ERVLE_8q23.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2152"; model_cov "599"; model_pct "10.6"; chr8 rmsk exon 112060576 112060670 370 - . gene_id "ERVLE_8q23.3c"; transcript_id "ERVLE_8q23.3c"; locus "ERVLE_8q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2152"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "5075"; repStart "-498"; chr8 rmsk exon 112061142 112061492 406 - . gene_id "ERVLE_8q23.3c"; transcript_id "ERVLE_8q23.3c"; locus "ERVLE_8q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2152"; repClass "LTR"; repEnd "5074"; repFamily "ERVL"; repLeft "4715"; repStart "-593"; chr8 rmsk exon 112063716 112063846 470 - . gene_id "ERVLE_8q23.3c"; transcript_id "ERVLE_8q23.3c"; locus "ERVLE_8q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2152"; repClass "LTR"; repEnd "4211"; repFamily "ERVL"; repLeft "4065"; repStart "-1456"; ### HERVH_8q23.3a ### chr8 rmsk gene 112195874 112201403 . + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0718"; model_cov "4916"; model_pct "63.7"; chr8 rmsk exon 112195874 112196275 2578 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 112196278 112199241 20725 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr8 rmsk exon 112199221 112199367 894 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 112199358 112199862 3311 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 112199865 112200467 3004 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 112200469 112200679 1314 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 112200678 112201054 2371 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 112201055 112201403 2015 + . gene_id "HERVH_8q23.3a"; transcript_id "HERVH_8q23.3a"; locus "HERVH_8q23.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0718"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_8q23.3d ### chr8 rmsk gene 112754877 112756290 . - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2154"; model_cov "637"; model_pct "11.2"; chr8 rmsk exon 112754877 112754941 261 - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2154"; repClass "LTR"; repEnd "5546"; repFamily "ERVL"; repLeft "5481"; repStart "-121"; chr8 rmsk exon 112755642 112755806 261 - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2154"; repClass "LTR"; repEnd "5480"; repFamily "ERVL"; repLeft "5306"; repStart "-187"; chr8 rmsk exon 112755826 112755895 342 - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2154"; repClass "LTR"; repEnd "5334"; repFamily "ERVL"; repLeft "5266"; repStart "-333"; chr8 rmsk exon 112755941 112755965 342 - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2154"; repClass "LTR"; repEnd "5265"; repFamily "ERVL"; repLeft "5241"; repStart "-402"; chr8 rmsk exon 112755981 112756290 759 - . gene_id "ERVLE_8q23.3d"; transcript_id "ERVLE_8q23.3d"; locus "ERVLE_8q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2154"; repClass "LTR"; repEnd "4865"; repFamily "ERVL"; repLeft "4559"; repStart "-802"; ### HERVL40_8q23.3a ### chr8 rmsk gene 112900214 112905845 . + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0251"; model_cov "2771"; model_pct "50.1"; chr8 rmsk exon 112900214 112900683 1226 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr8 rmsk exon 112900698 112901068 1250 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-5138"; repStart "18"; chr8 rmsk exon 112901527 112902070 1128 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "-3921"; repStart "1090"; chr8 rmsk exon 112902072 112902754 1595 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-2252"; repStart "2522"; chr8 rmsk exon 112902758 112903687 1407 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "-873"; repStart "3825"; chr8 rmsk exon 112904686 112904741 287 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "-248"; repStart "5223"; chr8 rmsk exon 112904838 112904914 296 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-135"; repStart "5318"; chr8 rmsk exon 112904939 112905092 701 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "5498"; repFamily "ERVL"; repLeft "-32"; repStart "5344"; chr8 rmsk exon 112905385 112905845 1683 + . gene_id "HERVL40_8q23.3a"; transcript_id "HERVL40_8q23.3a"; locus "HERVL40_8q23.3a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0251"; repClass "LTR"; repEnd "466"; repFamily "ERVL"; repLeft "-53"; repStart "1"; ### HERVL40_8q23.3b ### chr8 rmsk gene 113233804 113238852 . - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0252"; model_cov "2290"; model_pct "41.4"; chr8 rmsk exon 113233804 113233926 402 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "316"; repStart "-20"; chr8 rmsk exon 113233948 113234182 893 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "241"; repFamily "ERVL"; repLeft "1"; repStart "-221"; chr8 rmsk exon 113234184 113234529 934 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "5276"; repStart "-1"; chr8 rmsk exon 113235031 113235079 266 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "4868"; repStart "-614"; chr8 rmsk exon 113235245 113235571 892 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4318"; repStart "-874"; chr8 rmsk exon 113236913 113237176 747 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "4055"; repStart "-1208"; chr8 rmsk exon 113237216 113237794 3891 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "3812"; repFamily "ERVL"; repLeft "3193"; repStart "-1718"; chr8 rmsk exon 113238094 113238755 3891 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "2522"; repStart "-2338"; chr8 rmsk exon 113238755 113238852 491 - . gene_id "HERVL40_8q23.3b"; transcript_id "HERVL40_8q23.3b"; locus "HERVL40_8q23.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0252"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "1516"; repStart "-3919"; ### HERV4_8q23.3a ### chr8 rmsk gene 113470100 113471481 . - . gene_id "HERV4_8q23.3a"; transcript_id "HERV4_8q23.3a"; locus "HERV4_8q23.3a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0075"; model_cov "1616"; model_pct "24.7"; chr8 rmsk exon 113470100 113470655 3257 - . gene_id "HERV4_8q23.3a"; transcript_id "HERV4_8q23.3a"; locus "HERV4_8q23.3a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0075"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 113470656 113471481 1771 - . gene_id "HERV4_8q23.3a"; transcript_id "HERV4_8q23.3a"; locus "HERV4_8q23.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0075"; repClass "LTR"; repEnd "6237"; repFamily "ERV1"; repLeft "4621"; repStart "-302"; ### HERV4_8q23.3b ### chr8 rmsk gene 113472296 113475904 . - . gene_id "HERV4_8q23.3b"; transcript_id "HERV4_8q23.3b"; locus "HERV4_8q23.3b"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0076"; model_cov "3359"; model_pct "51.4"; chr8 rmsk exon 113472296 113472362 461 - . gene_id "HERV4_8q23.3b"; transcript_id "HERV4_8q23.3b"; locus "HERV4_8q23.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0076"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "6198"; repStart "-275"; chr8 rmsk exon 113472616 113475904 22768 - . gene_id "HERV4_8q23.3b"; transcript_id "HERV4_8q23.3b"; locus "HERV4_8q23.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0076"; repClass "LTR"; repEnd "6188"; repFamily "ERV1"; repLeft "2895"; repStart "-351"; ### ERVLB4_8q23.3b ### chr8 rmsk gene 113492842 113497453 . + . gene_id "ERVLB4_8q23.3b"; transcript_id "ERVLB4_8q23.3b"; locus "ERVLB4_8q23.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0976"; model_cov "4073"; model_pct "71.3"; chr8 rmsk exon 113492842 113493346 1582 + . gene_id "ERVLB4_8q23.3b"; transcript_id "ERVLB4_8q23.3b"; locus "ERVLB4_8q23.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_0976"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "-18"; repStart "1"; chr8 rmsk exon 113493348 113493451 500 + . gene_id "ERVLB4_8q23.3b"; transcript_id "ERVLB4_8q23.3b"; locus "ERVLB4_8q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0976"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "-4403"; repStart "1203"; chr8 rmsk exon 113493479 113494868 7235 + . gene_id "ERVLB4_8q23.3b"; transcript_id "ERVLB4_8q23.3b"; locus "ERVLB4_8q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0976"; repClass "LTR"; repEnd "2784"; repFamily "ERVL"; repLeft "-2930"; repStart "1370"; chr8 rmsk exon 113494976 113497453 12507 + . gene_id "ERVLB4_8q23.3b"; transcript_id "ERVLB4_8q23.3b"; locus "ERVLB4_8q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0976"; repClass "LTR"; repEnd "5303"; repFamily "ERVL"; repLeft "-411"; repStart "2752"; ### PABLA_8q23.3 ### chr8 rmsk gene 113501348 113506150 . - . gene_id "PABLA_8q23.3"; transcript_id "PABLA_8q23.3"; locus "PABLA_8q23.3"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0088"; model_cov "4315"; model_pct "86.0"; chr8 rmsk exon 113501348 113501979 4265 - . gene_id "PABLA_8q23.3"; transcript_id "PABLA_8q23.3"; locus "PABLA_8q23.3"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0088"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 113501980 113504770 16498 - . gene_id "PABLA_8q23.3"; transcript_id "PABLA_8q23.3"; locus "PABLA_8q23.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0088"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "1862"; repStart "0"; chr8 rmsk exon 113504983 113505472 3430 - . gene_id "PABLA_8q23.3"; transcript_id "PABLA_8q23.3"; locus "PABLA_8q23.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0088"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1151"; repStart "-3366"; chr8 rmsk exon 113505465 113506150 5051 - . gene_id "PABLA_8q23.3"; transcript_id "PABLA_8q23.3"; locus "PABLA_8q23.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0088"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "235"; repStart "-4116"; ### HERVH_8q23.3b ### chr8 rmsk gene 113510132 113515376 . - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0719"; model_cov "4748"; model_pct "61.6"; chr8 rmsk exon 113510132 113510428 2005 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "7633"; repFamily "ERV1"; repLeft "7322"; repStart "-80"; chr8 rmsk exon 113510427 113510584 1006 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5655"; repStart "-1894"; chr8 rmsk exon 113510576 113511204 4267 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "5116"; repFamily "ERV1"; repLeft "4488"; repStart "-2597"; chr8 rmsk exon 113511207 113511712 3393 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 113511703 113511849 900 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 113511829 113514925 20318 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 113514928 113515376 3276 - . gene_id "HERVH_8q23.3b"; transcript_id "HERVH_8q23.3b"; locus "HERVH_8q23.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0719"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFRD_8q23.3a ### chr8 rmsk gene 113517519 113522730 . + . gene_id "HERVFRD_8q23.3a"; transcript_id "HERVFRD_8q23.3a"; locus "HERVFRD_8q23.3a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0106"; model_cov "4103"; model_pct "56.9"; chr8 rmsk exon 113517519 113518099 2988 + . gene_id "HERVFRD_8q23.3a"; transcript_id "HERVFRD_8q23.3a"; locus "HERVFRD_8q23.3a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0106"; repClass "LTR"; repEnd "588"; repFamily "ERV1"; repLeft "-146"; repStart "1"; chr8 rmsk exon 113518492 113518628 705 + . gene_id "HERVFRD_8q23.3a"; transcript_id "HERVFRD_8q23.3a"; locus "HERVFRD_8q23.3a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0106"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "582"; chr8 rmsk exon 113518711 113520471 10122 + . gene_id "HERVFRD_8q23.3a"; transcript_id "HERVFRD_8q23.3a"; locus "HERVFRD_8q23.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0106"; repClass "LTR"; repEnd "1824"; repFamily "ERV1"; repLeft "-5381"; repStart "1"; chr8 rmsk exon 113520466 113522730 11014 + . gene_id "HERVFRD_8q23.3a"; transcript_id "HERVFRD_8q23.3a"; locus "HERVFRD_8q23.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0106"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "-2143"; repStart "2782"; ### HERVFRD_8q23.3b ### chr8 rmsk gene 113525316 113527541 . + . gene_id "HERVFRD_8q23.3b"; transcript_id "HERVFRD_8q23.3b"; locus "HERVFRD_8q23.3b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0107"; model_cov "1546"; model_pct "21.5"; chr8 rmsk exon 113525316 113526463 7180 + . gene_id "HERVFRD_8q23.3b"; transcript_id "HERVFRD_8q23.3b"; locus "HERVFRD_8q23.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0107"; repClass "LTR"; repEnd "6211"; repFamily "ERV1"; repLeft "-994"; repStart "5047"; chr8 rmsk exon 113526451 113526832 2405 + . gene_id "HERVFRD_8q23.3b"; transcript_id "HERVFRD_8q23.3b"; locus "HERVFRD_8q23.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0107"; repClass "LTR"; repEnd "7195"; repFamily "ERV1"; repLeft "-10"; repStart "6813"; chr8 rmsk exon 113526835 113527541 3779 + . gene_id "HERVFRD_8q23.3b"; transcript_id "HERVFRD_8q23.3b"; locus "HERVFRD_8q23.3b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0107"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERVLE_8q23.3e ### chr8 rmsk gene 113657688 113660493 . + . gene_id "ERVLE_8q23.3e"; transcript_id "ERVLE_8q23.3e"; locus "ERVLE_8q23.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2156"; model_cov "911"; model_pct "16.1"; chr8 rmsk exon 113657688 113658108 536 + . gene_id "ERVLE_8q23.3e"; transcript_id "ERVLE_8q23.3e"; locus "ERVLE_8q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2156"; repClass "LTR"; repEnd "3573"; repFamily "ERVL"; repLeft "-2094"; repStart "3121"; chr8 rmsk exon 113660156 113660493 454 + . gene_id "ERVLE_8q23.3e"; transcript_id "ERVLE_8q23.3e"; locus "ERVLE_8q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2156"; repClass "LTR"; repEnd "5212"; repFamily "ERVL"; repLeft "-455"; repStart "4753"; ### ERV316A3_8q23.3c ### chr8 rmsk gene 113754591 113756811 . + . gene_id "ERV316A3_8q23.3c"; transcript_id "ERV316A3_8q23.3c"; locus "ERV316A3_8q23.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1624"; model_cov "1150"; model_pct "22.0"; chr8 rmsk exon 113754591 113754910 632 + . gene_id "ERV316A3_8q23.3c"; transcript_id "ERV316A3_8q23.3c"; locus "ERV316A3_8q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1624"; repClass "LTR"; repEnd "1464"; repFamily "ERVL"; repLeft "-3762"; repStart "1143"; chr8 rmsk exon 113754986 113755117 409 + . gene_id "ERV316A3_8q23.3c"; transcript_id "ERV316A3_8q23.3c"; locus "ERV316A3_8q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1624"; repClass "LTR"; repEnd "1713"; repFamily "ERVL"; repLeft "-3513"; repStart "1580"; chr8 rmsk exon 113755865 113756204 1040 + . gene_id "ERV316A3_8q23.3c"; transcript_id "ERV316A3_8q23.3c"; locus "ERV316A3_8q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1624"; repClass "LTR"; repEnd "2339"; repFamily "ERVL"; repLeft "-2887"; repStart "2000"; chr8 rmsk exon 113756484 113756811 1040 + . gene_id "ERV316A3_8q23.3c"; transcript_id "ERV316A3_8q23.3c"; locus "ERV316A3_8q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1624"; repClass "LTR"; repEnd "2697"; repFamily "ERVL"; repLeft "-2529"; repStart "2340"; ### ERV316A3_8q23.3d ### chr8 rmsk gene 113760656 113764205 . - . gene_id "ERV316A3_8q23.3d"; transcript_id "ERV316A3_8q23.3d"; locus "ERV316A3_8q23.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1625"; model_cov "2020"; model_pct "38.7"; chr8 rmsk exon 113760656 113760748 325 - . gene_id "ERV316A3_8q23.3d"; transcript_id "ERV316A3_8q23.3d"; locus "ERV316A3_8q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1625"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "2240"; repStart "-2893"; chr8 rmsk exon 113760823 113761655 1013 - . gene_id "ERV316A3_8q23.3d"; transcript_id "ERV316A3_8q23.3d"; locus "ERV316A3_8q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1625"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "1291"; repStart "-3112"; chr8 rmsk exon 113762767 113763116 1446 - . gene_id "ERV316A3_8q23.3d"; transcript_id "ERV316A3_8q23.3d"; locus "ERV316A3_8q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1625"; repClass "LTR"; repEnd "1205"; repFamily "ERVL"; repLeft "845"; repStart "-4021"; chr8 rmsk exon 113763486 113764205 1446 - . gene_id "ERV316A3_8q23.3d"; transcript_id "ERV316A3_8q23.3d"; locus "ERV316A3_8q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1625"; repClass "LTR"; repEnd "844"; repFamily "ERVL"; repLeft "100"; repStart "-4382"; ### HERVL_8q23.3a ### chr8 rmsk gene 113934319 113941548 . - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0779"; model_cov "5654"; model_pct "100.0"; chr8 rmsk exon 113934319 113934396 292 - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0779"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "373"; repStart "0"; chr8 rmsk exon 113934402 113934834 2894 - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0779"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr8 rmsk exon 113934841 113935534 5076 - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0779"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "4967"; repStart "-2"; chr8 rmsk exon 113936150 113941120 37042 - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0779"; repClass "LTR"; repEnd "4970"; repFamily "ERVL"; repLeft "1"; repStart "-684"; chr8 rmsk exon 113941121 113941548 3057 - . gene_id "HERVL_8q23.3a"; transcript_id "HERVL_8q23.3a"; locus "HERVL_8q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0779"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### ERVLB4_8q23.3c ### chr8 rmsk gene 114194712 114197771 . - . gene_id "ERVLB4_8q23.3c"; transcript_id "ERVLB4_8q23.3c"; locus "ERVLB4_8q23.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0977"; model_cov "3007"; model_pct "52.6"; chr8 rmsk exon 114194712 114196334 6423 - . gene_id "ERVLB4_8q23.3c"; transcript_id "ERVLB4_8q23.3c"; locus "ERVLB4_8q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0977"; repClass "LTR"; repEnd "5484"; repFamily "ERVL"; repLeft "3849"; repStart "-230"; chr8 rmsk exon 114196331 114196673 1715 - . gene_id "ERVLB4_8q23.3c"; transcript_id "ERVLB4_8q23.3c"; locus "ERVLB4_8q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0977"; repClass "LTR"; repEnd "3451"; repFamily "ERVL"; repLeft "3109"; repStart "-2263"; chr8 rmsk exon 114196883 114197771 3020 - . gene_id "ERVLB4_8q23.3c"; transcript_id "ERVLB4_8q23.3c"; locus "ERVLB4_8q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0977"; repClass "LTR"; repEnd "3105"; repFamily "ERVL"; repLeft "2075"; repStart "-2609"; ### HERVH_8q23.3c ### chr8 rmsk gene 114241604 114247083 . + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0720"; model_cov "4620"; model_pct "59.9"; chr8 rmsk exon 114241604 114242054 3500 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 114242057 114243080 6568 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "1039"; repFamily "ERV1"; repLeft "-6674"; repStart "1"; chr8 rmsk exon 114243081 114244740 11690 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1330"; chr8 rmsk exon 114244735 114244881 885 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 114244872 114245376 3320 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 114245379 114246039 4308 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 114246037 114246257 1385 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr8 rmsk exon 114246256 114246634 2429 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 114246635 114247083 3543 + . gene_id "HERVH_8q23.3c"; transcript_id "HERVH_8q23.3c"; locus "HERVH_8q23.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0720"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q23.3d ### chr8 rmsk gene 114281698 114287733 . + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0721"; model_cov "4903"; model_pct "63.6"; chr8 rmsk exon 114281698 114282146 3257 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 114282149 114285388 16073 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8 rmsk exon 114285383 114285530 842 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 114285530 114286028 3268 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr8 rmsk exon 114286031 114286692 4323 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 114286690 114286910 1347 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr8 rmsk exon 114286909 114287284 2482 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 114287285 114287733 3237 + . gene_id "HERVH_8q23.3d"; transcript_id "HERVH_8q23.3d"; locus "HERVH_8q23.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0721"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_8q23.3e ### chr8 rmsk gene 114483577 114484798 . - . gene_id "ERV316A3_8q23.3e"; transcript_id "ERV316A3_8q23.3e"; locus "ERV316A3_8q23.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1626"; model_cov "650"; model_pct "12.4"; chr8 rmsk exon 114483577 114483914 231 - . gene_id "ERV316A3_8q23.3e"; transcript_id "ERV316A3_8q23.3e"; locus "ERV316A3_8q23.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1626"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "4"; repStart "-78"; chr8 rmsk exon 114484145 114484798 1576 - . gene_id "ERV316A3_8q23.3e"; transcript_id "ERV316A3_8q23.3e"; locus "ERV316A3_8q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1626"; repClass "LTR"; repEnd "4980"; repFamily "ERVL"; repLeft "4330"; repStart "-246"; ### ERVLE_8q23.3f ### chr8 rmsk gene 114808316 114809771 . + . gene_id "ERVLE_8q23.3f"; transcript_id "ERVLE_8q23.3f"; locus "ERVLE_8q23.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2159"; model_cov "1082"; model_pct "19.1"; chr8 rmsk exon 114808316 114809285 2705 + . gene_id "ERVLE_8q23.3f"; transcript_id "ERVLE_8q23.3f"; locus "ERVLE_8q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2159"; repClass "LTR"; repEnd "1819"; repFamily "ERVL"; repLeft "-3848"; repStart "871"; chr8 rmsk exon 114809638 114809771 559 + . gene_id "ERVLE_8q23.3f"; transcript_id "ERVLE_8q23.3f"; locus "ERVLE_8q23.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2159"; repClass "LTR"; repEnd "2162"; repFamily "ERVL"; repLeft "-3505"; repStart "2028"; ### ERV316A3_8q23.3f ### chr8 rmsk gene 114860055 114861582 . - . gene_id "ERV316A3_8q23.3f"; transcript_id "ERV316A3_8q23.3f"; locus "ERV316A3_8q23.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1627"; model_cov "1681"; model_pct "32.2"; chr8 rmsk exon 114860055 114860262 640 - . gene_id "ERV316A3_8q23.3f"; transcript_id "ERV316A3_8q23.3f"; locus "ERV316A3_8q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1627"; repClass "LTR"; repEnd "3676"; repFamily "ERVL"; repLeft "3477"; repStart "-1550"; chr8 rmsk exon 114860305 114861582 2359 - . gene_id "ERV316A3_8q23.3f"; transcript_id "ERV316A3_8q23.3f"; locus "ERV316A3_8q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1627"; repClass "LTR"; repEnd "2924"; repFamily "ERVL"; repLeft "1442"; repStart "-2302"; ### HUERSP3_8q23.3 ### chr8 rmsk gene 114915714 114918648 . - . gene_id "HUERSP3_8q23.3"; transcript_id "HUERSP3_8q23.3"; locus "HUERSP3_8q23.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0114"; model_cov "1621"; model_pct "18.2"; chr8 rmsk exon 114915714 114916272 2688 - . gene_id "HUERSP3_8q23.3"; transcript_id "HUERSP3_8q23.3"; locus "HUERSP3_8q23.3"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0114"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "83"; repStart "0"; chr8 rmsk exon 114916410 114916497 588 - . gene_id "HUERSP3_8q23.3"; transcript_id "HUERSP3_8q23.3"; locus "HUERSP3_8q23.3"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0114"; repClass "LTR"; repEnd "90"; repFamily "ERV1"; repLeft "3"; repStart "-555"; chr8 rmsk exon 114916502 114916711 1376 - . gene_id "HUERSP3_8q23.3"; transcript_id "HUERSP3_8q23.3"; locus "HUERSP3_8q23.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0114"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "8706"; repStart "-3"; chr8 rmsk exon 114917223 114918648 7789 - . gene_id "HUERSP3_8q23.3"; transcript_id "HUERSP3_8q23.3"; locus "HUERSP3_8q23.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0114"; repClass "LTR"; repEnd "6983"; repFamily "ERV1"; repLeft "5572"; repStart "-1936"; ### HUERSP1_8q23.3 ### chr8 rmsk gene 114945378 114946309 . + . gene_id "HUERSP1_8q23.3"; transcript_id "HUERSP1_8q23.3"; locus "HUERSP1_8q23.3"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0105"; model_cov "921"; model_pct "14.7"; chr8 rmsk exon 114945378 114946309 6060 + . gene_id "HUERSP1_8q23.3"; transcript_id "HUERSP1_8q23.3"; locus "HUERSP1_8q23.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0105"; repClass "LTR"; repEnd "3945"; repFamily "ERV1"; repLeft "-2318"; repStart "3024"; ### ERVLB4_8q23.3d ### chr8 rmsk gene 115069248 115071092 . + . gene_id "ERVLB4_8q23.3d"; transcript_id "ERVLB4_8q23.3d"; locus "ERVLB4_8q23.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0978"; model_cov "1396"; model_pct "24.4"; chr8 rmsk exon 115069248 115070652 7553 + . gene_id "ERVLB4_8q23.3d"; transcript_id "ERVLB4_8q23.3d"; locus "ERVLB4_8q23.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0978"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4318"; chr8 rmsk exon 115070653 115071092 1690 + . gene_id "ERVLB4_8q23.3d"; transcript_id "ERVLB4_8q23.3d"; locus "ERVLB4_8q23.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_0978"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### MER34B_8q23.3 ### chr8 rmsk gene 115202704 115205173 . + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0169"; model_cov "754"; model_pct "14.1"; chr8 rmsk exon 115202704 115203284 767 + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; repName "MER34C2"; geneRegion "ltr"; locid "MER34B-int_0169"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "0"; repStart "-35"; chr8 rmsk exon 115203310 115203511 372 + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0169"; repClass "LTR"; repEnd "-2611"; repFamily "ERV1"; repLeft "-7967"; repStart "-2804"; chr8 rmsk exon 115203834 115204228 690 + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0169"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-4731"; repStart "227"; chr8 rmsk exon 115204956 115205073 345 + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0169"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-4665"; repStart "581"; chr8 rmsk exon 115205113 115205173 345 + . gene_id "MER34B_8q23.3"; transcript_id "MER34B_8q23.3"; locus "MER34B_8q23.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0169"; repClass "LTR"; repEnd "745"; repFamily "ERV1"; repLeft "-4611"; repStart "692"; ### HERVH_8q23.3e ### chr8 rmsk gene 115212253 115217978 . + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0722"; model_cov "4919"; model_pct "63.8"; chr8 rmsk exon 115212253 115212703 3449 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 115212706 115215642 19567 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr8 rmsk exon 115215622 115215771 992 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 115215762 115216266 3335 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 115216269 115216930 4374 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 115216928 115217149 1346 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr8 rmsk exon 115217148 115217527 2478 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 115217528 115217978 3443 + . gene_id "HERVH_8q23.3e"; transcript_id "HERVH_8q23.3e"; locus "HERVH_8q23.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0722"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q23.3f ### chr8 rmsk gene 115814948 115819406 . + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0723"; model_cov "4029"; model_pct "52.2"; chr8 rmsk exon 115814948 115815054 955 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "366"; chr8 rmsk exon 115815055 115818000 20102 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8 rmsk exon 115817995 115818142 904 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8 rmsk exon 115818133 115818568 2861 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "-3783"; repStart "3492"; chr8 rmsk exon 115818573 115818635 418 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5753"; chr8 rmsk exon 115818636 115819013 2433 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 115819014 115819406 1866 + . gene_id "HERVH_8q23.3f"; transcript_id "HERVH_8q23.3f"; locus "HERVH_8q23.3f"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0723"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "-39"; repStart "2"; ### HERVL_8q23.3b ### chr8 rmsk gene 116144991 116151531 . - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0780"; model_cov "5649"; model_pct "99.9"; chr8 rmsk exon 116144991 116145435 2860 - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0780"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr8 rmsk exon 116145440 116150921 23448 - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0780"; repClass "LTR"; repEnd "5650"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr8 rmsk exon 116150926 116150992 237 - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0780"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "366"; repStart "-4"; chr8 rmsk exon 116151013 116151341 2320 - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0780"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "70"; repStart "-40"; chr8 rmsk exon 116151337 116151531 1426 - . gene_id "HERVL_8q23.3b"; transcript_id "HERVL_8q23.3b"; locus "HERVL_8q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0780"; repClass "LTR"; repEnd "202"; repFamily "ERVL"; repLeft "1"; repStart "-242"; ### ERVLE_8q23.3g ### chr8 rmsk gene 116247046 116247886 . + . gene_id "ERVLE_8q23.3g"; transcript_id "ERVLE_8q23.3g"; locus "ERVLE_8q23.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2161"; model_cov "688"; model_pct "12.1"; chr8 rmsk exon 116247046 116247148 262 + . gene_id "ERVLE_8q23.3g"; transcript_id "ERVLE_8q23.3g"; locus "ERVLE_8q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2161"; repClass "LTR"; repEnd "2128"; repFamily "ERVL"; repLeft "-3539"; repStart "2026"; chr8 rmsk exon 116247167 116247557 757 + . gene_id "ERVLE_8q23.3g"; transcript_id "ERVLE_8q23.3g"; locus "ERVLE_8q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2161"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "-2285"; repStart "2960"; chr8 rmsk exon 116247724 116247886 550 + . gene_id "ERVLE_8q23.3g"; transcript_id "ERVLE_8q23.3g"; locus "ERVLE_8q23.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2161"; repClass "LTR"; repEnd "3759"; repFamily "ERVL"; repLeft "-1908"; repStart "3595"; ### ERV316A3_8q23.3g ### chr8 rmsk gene 116247882 116249085 . + . gene_id "ERV316A3_8q23.3g"; transcript_id "ERV316A3_8q23.3g"; locus "ERV316A3_8q23.3g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1629"; model_cov "1263"; model_pct "24.2"; chr8 rmsk exon 116247882 116249085 1769 + . gene_id "ERV316A3_8q23.3g"; transcript_id "ERV316A3_8q23.3g"; locus "ERV316A3_8q23.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1629"; repClass "LTR"; repEnd "4905"; repFamily "ERVL"; repLeft "-321"; repStart "3642"; ### ERVLE_8q24.11 ### chr8 rmsk gene 116775264 116776612 . + . gene_id "ERVLE_8q24.11"; transcript_id "ERVLE_8q24.11"; locus "ERVLE_8q24.11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2162"; model_cov "949"; model_pct "16.7"; chr8 rmsk exon 116775264 116776046 2310 + . gene_id "ERVLE_8q24.11"; transcript_id "ERVLE_8q24.11"; locus "ERVLE_8q24.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2162"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3215"; repStart "1660"; chr8 rmsk exon 116776455 116776612 557 + . gene_id "ERVLE_8q24.11"; transcript_id "ERVLE_8q24.11"; locus "ERVLE_8q24.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2162"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-3001"; repStart "2509"; ### ERV316A3_8q24.11a ### chr8 rmsk gene 117390978 117393370 . + . gene_id "ERV316A3_8q24.11a"; transcript_id "ERV316A3_8q24.11a"; locus "ERV316A3_8q24.11a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1630"; model_cov "2016"; model_pct "38.6"; chr8 rmsk exon 117390978 117391243 947 + . gene_id "ERV316A3_8q24.11a"; transcript_id "ERV316A3_8q24.11a"; locus "ERV316A3_8q24.11a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1630"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "187"; chr8 rmsk exon 117391246 117391835 934 + . gene_id "ERV316A3_8q24.11a"; transcript_id "ERV316A3_8q24.11a"; locus "ERV316A3_8q24.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1630"; repClass "LTR"; repEnd "888"; repFamily "ERVL"; repLeft "-4338"; repStart "231"; chr8 rmsk exon 117392009 117393370 1802 + . gene_id "ERV316A3_8q24.11a"; transcript_id "ERV316A3_8q24.11a"; locus "ERV316A3_8q24.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1630"; repClass "LTR"; repEnd "2064"; repFamily "ERVL"; repLeft "-3162"; repStart "705"; ### ERV316A3_8q24.11b ### chr8 rmsk gene 117402490 117406395 . + . gene_id "ERV316A3_8q24.11b"; transcript_id "ERV316A3_8q24.11b"; locus "ERV316A3_8q24.11b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1631"; model_cov "3372"; model_pct "64.5"; chr8 rmsk exon 117402490 117402721 333 + . gene_id "ERV316A3_8q24.11b"; transcript_id "ERV316A3_8q24.11b"; locus "ERV316A3_8q24.11b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1631"; repClass "LTR"; repEnd "299"; repFamily "ERVL"; repLeft "-269"; repStart "44"; chr8 rmsk exon 117402945 117403811 742 + . gene_id "ERV316A3_8q24.11b"; transcript_id "ERV316A3_8q24.11b"; locus "ERV316A3_8q24.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1631"; repClass "LTR"; repEnd "1827"; repFamily "ERVL"; repLeft "-3399"; repStart "984"; chr8 rmsk exon 117403906 117406395 3186 + . gene_id "ERV316A3_8q24.11b"; transcript_id "ERV316A3_8q24.11b"; locus "ERV316A3_8q24.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1631"; repClass "LTR"; repEnd "4454"; repFamily "ERVL"; repLeft "-772"; repStart "1925"; ### ERV316A3_8q24.11c ### chr8 rmsk gene 117475665 117478774 . - . gene_id "ERV316A3_8q24.11c"; transcript_id "ERV316A3_8q24.11c"; locus "ERV316A3_8q24.11c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1632"; model_cov "2592"; model_pct "49.6"; chr8 rmsk exon 117475665 117478110 4977 - . gene_id "ERV316A3_8q24.11c"; transcript_id "ERV316A3_8q24.11c"; locus "ERV316A3_8q24.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1632"; repClass "LTR"; repEnd "2977"; repFamily "ERVL"; repLeft "385"; repStart "-2249"; chr8 rmsk exon 117478392 117478774 1217 - . gene_id "ERV316A3_8q24.11c"; transcript_id "ERV316A3_8q24.11c"; locus "ERV316A3_8q24.11c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1632"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "26"; repStart "-8"; ### ERV316A3_8q24.11d ### chr8 rmsk gene 117594591 117597824 . + . gene_id "ERV316A3_8q24.11d"; transcript_id "ERV316A3_8q24.11d"; locus "ERV316A3_8q24.11d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1633"; model_cov "1803"; model_pct "34.5"; chr8 rmsk exon 117594591 117595024 1458 + . gene_id "ERV316A3_8q24.11d"; transcript_id "ERV316A3_8q24.11d"; locus "ERV316A3_8q24.11d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1633"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-25"; repStart "1"; chr8 rmsk exon 117595479 117596585 1320 + . gene_id "ERV316A3_8q24.11d"; transcript_id "ERV316A3_8q24.11d"; locus "ERV316A3_8q24.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1633"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "-3564"; repStart "446"; chr8 rmsk exon 117596673 117597264 1480 + . gene_id "ERV316A3_8q24.11d"; transcript_id "ERV316A3_8q24.11d"; locus "ERV316A3_8q24.11d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1633"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "-149"; repStart "4490"; chr8 rmsk exon 117597397 117597824 1293 + . gene_id "ERV316A3_8q24.11d"; transcript_id "ERV316A3_8q24.11d"; locus "ERV316A3_8q24.11d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1633"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### ERV316A3_8q24.12a ### chr8 rmsk gene 118816444 118817918 . + . gene_id "ERV316A3_8q24.12a"; transcript_id "ERV316A3_8q24.12a"; locus "ERV316A3_8q24.12a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1634"; model_cov "694"; model_pct "13.3"; chr8 rmsk exon 118816444 118816540 383 + . gene_id "ERV316A3_8q24.12a"; transcript_id "ERV316A3_8q24.12a"; locus "ERV316A3_8q24.12a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1634"; repClass "LTR"; repEnd "104"; repFamily "ERVL"; repLeft "-352"; repStart "3"; chr8 rmsk exon 118816597 118816761 388 + . gene_id "ERV316A3_8q24.12a"; transcript_id "ERV316A3_8q24.12a"; locus "ERV316A3_8q24.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1634"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1103"; repStart "3965"; chr8 rmsk exon 118816889 118817390 991 + . gene_id "ERV316A3_8q24.12a"; transcript_id "ERV316A3_8q24.12a"; locus "ERV316A3_8q24.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1634"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "-112"; repStart "4578"; chr8 rmsk exon 118817495 118817918 1277 + . gene_id "ERV316A3_8q24.12a"; transcript_id "ERV316A3_8q24.12a"; locus "ERV316A3_8q24.12a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1634"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### ERV316A3_8q24.12b ### chr8 rmsk gene 119227340 119230386 . - . gene_id "ERV316A3_8q24.12b"; transcript_id "ERV316A3_8q24.12b"; locus "ERV316A3_8q24.12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1635"; model_cov "2214"; model_pct "42.4"; chr8 rmsk exon 119227340 119227671 1013 - . gene_id "ERV316A3_8q24.12b"; transcript_id "ERV316A3_8q24.12b"; locus "ERV316A3_8q24.12b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1635"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "17"; repStart "-64"; chr8 rmsk exon 119227701 119229313 4620 - . gene_id "ERV316A3_8q24.12b"; transcript_id "ERV316A3_8q24.12b"; locus "ERV316A3_8q24.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1635"; repClass "LTR"; repEnd "5208"; repFamily "ERVL"; repLeft "3617"; repStart "-18"; chr8 rmsk exon 119229611 119230246 4620 - . gene_id "ERV316A3_8q24.12b"; transcript_id "ERV316A3_8q24.12b"; locus "ERV316A3_8q24.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1635"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "2993"; repStart "-1610"; chr8 rmsk exon 119230289 119230386 380 - . gene_id "ERV316A3_8q24.12b"; transcript_id "ERV316A3_8q24.12b"; locus "ERV316A3_8q24.12b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1635"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "289"; repStart "-36"; ### ERV316A3_8q24.12c ### chr8 rmsk gene 119248305 119254183 . - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1636"; model_cov "3018"; model_pct "57.7"; chr8 rmsk exon 119248305 119248765 1070 - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1636"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "2"; repStart "-12"; chr8 rmsk exon 119248768 119249754 2906 - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1636"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4221"; repStart "-1"; chr8 rmsk exon 119251541 119251793 398 - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1636"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "2680"; repStart "-2124"; chr8 rmsk exon 119252254 119252670 1153 - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1636"; repClass "LTR"; repEnd "2947"; repFamily "ERVL"; repLeft "2512"; repStart "-2279"; chr8 rmsk exon 119253009 119254183 2365 - . gene_id "ERV316A3_8q24.12c"; transcript_id "ERV316A3_8q24.12c"; locus "ERV316A3_8q24.12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1636"; repClass "LTR"; repEnd "2319"; repFamily "ERVL"; repLeft "1162"; repStart "-2907"; ### ERV316A3_8q24.12d ### chr8 rmsk gene 119257465 119258225 . - . gene_id "ERV316A3_8q24.12d"; transcript_id "ERV316A3_8q24.12d"; locus "ERV316A3_8q24.12d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1637"; model_cov "794"; model_pct "15.2"; chr8 rmsk exon 119257465 119258225 1804 - . gene_id "ERV316A3_8q24.12d"; transcript_id "ERV316A3_8q24.12d"; locus "ERV316A3_8q24.12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1637"; repClass "LTR"; repEnd "965"; repFamily "ERVL"; repLeft "171"; repStart "-4261"; ### ERV316A3_8q24.12e ### chr8 rmsk gene 119339966 119342719 . + . gene_id "ERV316A3_8q24.12e"; transcript_id "ERV316A3_8q24.12e"; locus "ERV316A3_8q24.12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1638"; model_cov "1237"; model_pct "23.7"; chr8 rmsk exon 119339966 119340387 1018 + . gene_id "ERV316A3_8q24.12e"; transcript_id "ERV316A3_8q24.12e"; locus "ERV316A3_8q24.12e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1638"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-36"; repStart "1"; chr8 rmsk exon 119340485 119341497 2625 + . gene_id "ERV316A3_8q24.12e"; transcript_id "ERV316A3_8q24.12e"; locus "ERV316A3_8q24.12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1638"; repClass "LTR"; repEnd "3698"; repFamily "ERVL"; repLeft "-1528"; repStart "2700"; chr8 rmsk exon 119342488 119342719 774 + . gene_id "ERV316A3_8q24.12e"; transcript_id "ERV316A3_8q24.12e"; locus "ERV316A3_8q24.12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1638"; repClass "LTR"; repEnd "3959"; repFamily "ERVL"; repLeft "-1267"; repStart "3720"; ### ERVLE_8q24.12 ### chr8 rmsk gene 119518017 119520599 . - . gene_id "ERVLE_8q24.12"; transcript_id "ERVLE_8q24.12"; locus "ERVLE_8q24.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2164"; model_cov "1529"; model_pct "27.0"; chr8 rmsk exon 119518017 119518592 813 - . gene_id "ERVLE_8q24.12"; transcript_id "ERVLE_8q24.12"; locus "ERVLE_8q24.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2164"; repClass "LTR"; repEnd "3011"; repFamily "ERVL"; repLeft "2498"; repStart "-2656"; chr8 rmsk exon 119518608 119518988 687 - . gene_id "ERVLE_8q24.12"; transcript_id "ERVLE_8q24.12"; locus "ERVLE_8q24.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2164"; repClass "LTR"; repEnd "2344"; repFamily "ERVL"; repLeft "1944"; repStart "-3323"; chr8 rmsk exon 119519512 119519915 789 - . gene_id "ERVLE_8q24.12"; transcript_id "ERVLE_8q24.12"; locus "ERVLE_8q24.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2164"; repClass "LTR"; repEnd "1302"; repFamily "ERVL"; repLeft "863"; repStart "-4365"; chr8 rmsk exon 119520434 119520599 281 - . gene_id "ERVLE_8q24.12"; transcript_id "ERVLE_8q24.12"; locus "ERVLE_8q24.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2164"; repClass "LTR"; repEnd "557"; repFamily "ERVL"; repLeft "380"; repStart "-5110"; ### ERV316A3_8q24.12f ### chr8 rmsk gene 121213958 121216002 . + . gene_id "ERV316A3_8q24.12f"; transcript_id "ERV316A3_8q24.12f"; locus "ERV316A3_8q24.12f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1639"; model_cov "1647"; model_pct "31.5"; chr8 rmsk exon 121213958 121215539 2766 + . gene_id "ERV316A3_8q24.12f"; transcript_id "ERV316A3_8q24.12f"; locus "ERV316A3_8q24.12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1639"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "3495"; chr8 rmsk exon 121215591 121216002 1113 + . gene_id "ERV316A3_8q24.12f"; transcript_id "ERV316A3_8q24.12f"; locus "ERV316A3_8q24.12f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1639"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HERVL74_8q24.13 ### chr8 rmsk gene 121510181 121514719 . + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0053"; model_cov "3714"; model_pct "65.3"; chr8 rmsk exon 121510181 121510606 1722 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-4114"; repStart "1125"; chr8 rmsk exon 121511111 121512876 8716 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "3381"; repFamily "ERVL"; repLeft "-2304"; repStart "1561"; chr8 rmsk exon 121513087 121513324 1040 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3402"; chr8 rmsk exon 121513331 121513586 608 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "4227"; repFamily "ERVL"; repLeft "-1458"; repStart "3914"; chr8 rmsk exon 121513610 121514315 2364 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "5262"; repFamily "ERVL"; repLeft "-423"; repStart "4577"; chr8 rmsk exon 121514387 121514597 834 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "5604"; repFamily "ERVL"; repLeft "-81"; repStart "5395"; chr8 rmsk exon 121514629 121514719 380 + . gene_id "HERVL74_8q24.13"; transcript_id "HERVL74_8q24.13"; locus "HERVL74_8q24.13"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0053"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "-487"; repStart "41"; ### ERVLE_8q24.13a ### chr8 rmsk gene 122030942 122031907 . - . gene_id "ERVLE_8q24.13a"; transcript_id "ERVLE_8q24.13a"; locus "ERVLE_8q24.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2167"; model_cov "866"; model_pct "15.3"; chr8 rmsk exon 122030942 122031128 314 - . gene_id "ERVLE_8q24.13a"; transcript_id "ERVLE_8q24.13a"; locus "ERVLE_8q24.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2167"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "4365"; repStart "-1090"; chr8 rmsk exon 122031278 122031907 1226 - . gene_id "ERVLE_8q24.13a"; transcript_id "ERVLE_8q24.13a"; locus "ERVLE_8q24.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2167"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2837"; repStart "-2176"; ### ERV316A3_8q24.13a ### chr8 rmsk gene 122140896 122142063 . - . gene_id "ERV316A3_8q24.13a"; transcript_id "ERV316A3_8q24.13a"; locus "ERV316A3_8q24.13a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1640"; model_cov "749"; model_pct "14.3"; chr8 rmsk exon 122140896 122141330 1381 - . gene_id "ERV316A3_8q24.13a"; transcript_id "ERV316A3_8q24.13a"; locus "ERV316A3_8q24.13a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1640"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "1"; repStart "-6"; chr8 rmsk exon 122141331 122142063 1698 - . gene_id "ERV316A3_8q24.13a"; transcript_id "ERV316A3_8q24.13a"; locus "ERV316A3_8q24.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1640"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4477"; repStart "0"; ### HERVH48_8q24.13 ### chr8 rmsk gene 122830053 122836867 . - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0032"; model_cov "6131"; model_pct "92.1"; chr8 rmsk exon 122830053 122830439 2962 - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0032"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 122830440 122830621 1313 - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0032"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6472"; repStart "0"; chr8 rmsk exon 122830622 122833714 27059 - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0032"; repClass "LTR"; repEnd "5653"; repFamily "ERV1"; repLeft "2212"; repStart "-1001"; chr8 rmsk exon 122834009 122836455 27059 - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0032"; repClass "LTR"; repEnd "2509"; repFamily "ERV1"; repLeft "1"; repStart "-4145"; chr8 rmsk exon 122836458 122836867 3239 - . gene_id "HERVH48_8q24.13"; transcript_id "HERVH48_8q24.13"; locus "HERVH48_8q24.13"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0032"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_8q24.13b ### chr8 rmsk gene 123155034 123156653 . + . gene_id "ERVLE_8q24.13b"; transcript_id "ERVLE_8q24.13b"; locus "ERVLE_8q24.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2169"; model_cov "1403"; model_pct "24.8"; chr8 rmsk exon 123155034 123155412 696 + . gene_id "ERVLE_8q24.13b"; transcript_id "ERVLE_8q24.13b"; locus "ERVLE_8q24.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2169"; repClass "LTR"; repEnd "1517"; repFamily "ERVL"; repLeft "-4150"; repStart "1055"; chr8 rmsk exon 123155428 123156158 2503 + . gene_id "ERVLE_8q24.13b"; transcript_id "ERVLE_8q24.13b"; locus "ERVLE_8q24.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2169"; repClass "LTR"; repEnd "2221"; repFamily "ERVL"; repLeft "-3446"; repStart "1468"; chr8 rmsk exon 123156461 123156653 2503 + . gene_id "ERVLE_8q24.13b"; transcript_id "ERVLE_8q24.13b"; locus "ERVLE_8q24.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2169"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "-3257"; repStart "2222"; ### ERVLE_8q24.13c ### chr8 rmsk gene 123300023 123301039 . + . gene_id "ERVLE_8q24.13c"; transcript_id "ERVLE_8q24.13c"; locus "ERVLE_8q24.13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2170"; model_cov "1019"; model_pct "18.0"; chr8 rmsk exon 123300023 123300348 1203 + . gene_id "ERVLE_8q24.13c"; transcript_id "ERVLE_8q24.13c"; locus "ERVLE_8q24.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2170"; repClass "LTR"; repEnd "3873"; repFamily "ERVL"; repLeft "-1794"; repStart "3554"; chr8 rmsk exon 123300362 123301039 1980 + . gene_id "ERVLE_8q24.13c"; transcript_id "ERVLE_8q24.13c"; locus "ERVLE_8q24.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2170"; repClass "LTR"; repEnd "4622"; repFamily "ERVL"; repLeft "-1045"; repStart "3922"; ### ERVLE_8q24.13d ### chr8 rmsk gene 123554266 123555046 . + . gene_id "ERVLE_8q24.13d"; transcript_id "ERVLE_8q24.13d"; locus "ERVLE_8q24.13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2173"; model_cov "978"; model_pct "17.3"; chr8 rmsk exon 123554266 123555046 1624 + . gene_id "ERVLE_8q24.13d"; transcript_id "ERVLE_8q24.13d"; locus "ERVLE_8q24.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2173"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "-439"; repStart "4250"; ### ERVLB4_8q24.13a ### chr8 rmsk gene 123851244 123852471 . - . gene_id "ERVLB4_8q24.13a"; transcript_id "ERVLB4_8q24.13a"; locus "ERVLB4_8q24.13a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0982"; model_cov "1250"; model_pct "21.9"; chr8 rmsk exon 123851244 123852471 7443 - . gene_id "ERVLB4_8q24.13a"; transcript_id "ERVLB4_8q24.13a"; locus "ERVLB4_8q24.13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0982"; repClass "LTR"; repEnd "5396"; repFamily "ERVL"; repLeft "4146"; repStart "-318"; ### ERVLE_8q24.13e ### chr8 rmsk gene 124207265 124209752 . - . gene_id "ERVLE_8q24.13e"; transcript_id "ERVLE_8q24.13e"; locus "ERVLE_8q24.13e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2175"; model_cov "1718"; model_pct "30.3"; chr8 rmsk exon 124207265 124208000 1759 - . gene_id "ERVLE_8q24.13e"; transcript_id "ERVLE_8q24.13e"; locus "ERVLE_8q24.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2175"; repClass "LTR"; repEnd "2749"; repFamily "ERVL"; repLeft "2012"; repStart "-2918"; chr8 rmsk exon 124208537 124208805 559 - . gene_id "ERVLE_8q24.13e"; transcript_id "ERVLE_8q24.13e"; locus "ERVLE_8q24.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2175"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1620"; repStart "-3700"; chr8 rmsk exon 124209202 124209752 909 - . gene_id "ERVLE_8q24.13e"; transcript_id "ERVLE_8q24.13e"; locus "ERVLE_8q24.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2175"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "973"; repStart "-4060"; ### MER34B_8q24.13 ### chr8 rmsk gene 124340148 124340828 . + . gene_id "MER34B_8q24.13"; transcript_id "MER34B_8q24.13"; locus "MER34B_8q24.13"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0171"; model_cov "893"; model_pct "16.7"; chr8 rmsk exon 124340148 124340712 1138 + . gene_id "MER34B_8q24.13"; transcript_id "MER34B_8q24.13"; locus "MER34B_8q24.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0171"; repClass "LTR"; repEnd "2081"; repFamily "ERV1"; repLeft "-3275"; repStart "1188"; chr8 rmsk exon 124340713 124340828 619 + . gene_id "MER34B_8q24.13"; transcript_id "MER34B_8q24.13"; locus "MER34B_8q24.13"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0171"; repClass "LTR"; repEnd "248"; repFamily "ERV1"; repLeft "-294"; repStart "132"; ### PRIMA41_8q24.13 ### chr8 rmsk gene 124442248 124447580 . - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0079"; model_cov "3541"; model_pct "45.7"; chr8 rmsk exon 124442248 124442457 744 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "37"; repStart "-307"; chr8 rmsk exon 124442458 124442727 6635 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7495"; repStart "0"; chr8 rmsk exon 124443048 124443518 6635 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "7494"; repFamily "ERV1"; repLeft "7016"; repStart "-262"; chr8 rmsk exon 124443829 124445577 12530 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "7015"; repFamily "ERV1"; repLeft "5260"; repStart "-741"; chr8 rmsk exon 124445872 124446219 12530 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "4960"; repStart "-2497"; chr8 rmsk exon 124446531 124446740 12530 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "4754"; repStart "-2797"; chr8 rmsk exon 124446735 124446757 2448 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "4586"; repFamily "ERV1"; repLeft "4569"; repStart "-3170"; chr8 rmsk exon 124447045 124447491 2448 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "4568"; repFamily "ERV1"; repLeft "4127"; repStart "-3188"; chr8 rmsk exon 124447503 124447580 292 - . gene_id "PRIMA41_8q24.13"; transcript_id "PRIMA41_8q24.13"; locus "PRIMA41_8q24.13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0079"; repClass "LTR"; repEnd "3613"; repFamily "ERV1"; repLeft "3528"; repStart "-4143"; ### ERV316A3_8q24.13b ### chr8 rmsk gene 124464425 124467547 . + . gene_id "ERV316A3_8q24.13b"; transcript_id "ERV316A3_8q24.13b"; locus "ERV316A3_8q24.13b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1641"; model_cov "1646"; model_pct "31.5"; chr8 rmsk exon 124464425 124464527 357 + . gene_id "ERV316A3_8q24.13b"; transcript_id "ERV316A3_8q24.13b"; locus "ERV316A3_8q24.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1641"; repClass "LTR"; repEnd "919"; repFamily "ERVL"; repLeft "-4307"; repStart "814"; chr8 rmsk exon 124465256 124465953 3069 + . gene_id "ERV316A3_8q24.13b"; transcript_id "ERV316A3_8q24.13b"; locus "ERV316A3_8q24.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1641"; repClass "LTR"; repEnd "4012"; repFamily "ERVL"; repLeft "-1214"; repStart "3279"; chr8 rmsk exon 124466268 124466828 3069 + . gene_id "ERV316A3_8q24.13b"; transcript_id "ERV316A3_8q24.13b"; locus "ERV316A3_8q24.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1641"; repClass "LTR"; repEnd "4532"; repFamily "ERVL"; repLeft "-694"; repStart "4013"; chr8 rmsk exon 124467267 124467547 3069 + . gene_id "ERV316A3_8q24.13b"; transcript_id "ERV316A3_8q24.13b"; locus "ERV316A3_8q24.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1641"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-404"; repStart "4533"; ### ERVLE_8q24.13f ### chr8 rmsk gene 124464531 124465163 . + . gene_id "ERVLE_8q24.13f"; transcript_id "ERVLE_8q24.13f"; locus "ERVLE_8q24.13f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2176"; model_cov "678"; model_pct "12.0"; chr8 rmsk exon 124464531 124465020 1003 + . gene_id "ERVLE_8q24.13f"; transcript_id "ERVLE_8q24.13f"; locus "ERVLE_8q24.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2176"; repClass "LTR"; repEnd "3034"; repFamily "ERVL"; repLeft "-2633"; repStart "2515"; chr8 rmsk exon 124465016 124465163 391 + . gene_id "ERVLE_8q24.13f"; transcript_id "ERVLE_8q24.13f"; locus "ERVLE_8q24.13f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2176"; repClass "LTR"; repEnd "3528"; repFamily "ERVL"; repLeft "-2139"; repStart "3369"; ### ERV316A3_8q24.13c ### chr8 rmsk gene 124885312 124886037 . - . gene_id "ERV316A3_8q24.13c"; transcript_id "ERV316A3_8q24.13c"; locus "ERV316A3_8q24.13c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1642"; model_cov "657"; model_pct "12.6"; chr8 rmsk exon 124885312 124885416 378 - . gene_id "ERV316A3_8q24.13c"; transcript_id "ERV316A3_8q24.13c"; locus "ERV316A3_8q24.13c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1642"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "14"; repStart "-327"; chr8 rmsk exon 124885458 124885697 718 - . gene_id "ERV316A3_8q24.13c"; transcript_id "ERV316A3_8q24.13c"; locus "ERV316A3_8q24.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1642"; repClass "LTR"; repEnd "5118"; repFamily "ERVL"; repLeft "4869"; repStart "-108"; chr8 rmsk exon 124885696 124886037 4002 - . gene_id "ERV316A3_8q24.13c"; transcript_id "ERV316A3_8q24.13c"; locus "ERV316A3_8q24.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1642"; repClass "LTR"; repEnd "2357"; repFamily "ERVL"; repLeft "1949"; repStart "-2869"; ### ERV316A3_8q24.13d ### chr8 rmsk gene 124886335 124889425 . - . gene_id "ERV316A3_8q24.13d"; transcript_id "ERV316A3_8q24.13d"; locus "ERV316A3_8q24.13d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1643"; model_cov "2304"; model_pct "44.1"; chr8 rmsk exon 124886335 124887214 4002 - . gene_id "ERV316A3_8q24.13d"; transcript_id "ERV316A3_8q24.13d"; locus "ERV316A3_8q24.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1643"; repClass "LTR"; repEnd "2389"; repFamily "ERVL"; repLeft "1513"; repStart "-2837"; chr8 rmsk exon 124887510 124887556 4002 - . gene_id "ERV316A3_8q24.13d"; transcript_id "ERV316A3_8q24.13d"; locus "ERV316A3_8q24.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1643"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1483"; repStart "-3714"; chr8 rmsk exon 124887665 124889001 4002 - . gene_id "ERV316A3_8q24.13d"; transcript_id "ERV316A3_8q24.13d"; locus "ERV316A3_8q24.13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1643"; repClass "LTR"; repEnd "1482"; repFamily "ERVL"; repLeft "83"; repStart "-3744"; chr8 rmsk exon 124889036 124889425 1143 - . gene_id "ERV316A3_8q24.13d"; transcript_id "ERV316A3_8q24.13d"; locus "ERV316A3_8q24.13d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1643"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "11"; repStart "0"; ### HERVW_8q24.13 ### chr8 rmsk gene 124899765 124904056 . - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0185"; model_cov "3151"; model_pct "36.5"; chr8 rmsk exon 124899765 124900546 5302 - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0185"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 124900548 124900838 2426 - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0185"; repClass "LTR"; repEnd "8625"; repFamily "ERV1"; repLeft "8335"; repStart "-1"; chr8 rmsk exon 124900829 124900867 324 - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0185"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr8 rmsk exon 124900864 124901171 2358 - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0185"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6840"; repStart "-1479"; chr8 rmsk exon 124901151 124904056 18047 - . gene_id "HERVW_8q24.13"; transcript_id "HERVW_8q24.13"; locus "HERVW_8q24.13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0185"; repClass "LTR"; repEnd "3763"; repFamily "ERV1"; repLeft "1247"; repStart "-4863"; ### HERVIP10FH_8q24.13a ### chr8 rmsk gene 124904044 124906459 . - . gene_id "HERVIP10FH_8q24.13a"; transcript_id "HERVIP10FH_8q24.13a"; locus "HERVIP10FH_8q24.13a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0096"; model_cov "1726"; model_pct "33.8"; chr8 rmsk exon 124904044 124905036 6841 - . gene_id "HERVIP10FH_8q24.13a"; transcript_id "HERVIP10FH_8q24.13a"; locus "HERVIP10FH_8q24.13a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0096"; repClass "LTR"; repEnd "1939"; repFamily "ERV1"; repLeft "938"; repStart "-3163"; chr8 rmsk exon 124905085 124905127 6841 - . gene_id "HERVIP10FH_8q24.13a"; transcript_id "HERVIP10FH_8q24.13a"; locus "HERVIP10FH_8q24.13a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0096"; repClass "LTR"; repEnd "937"; repFamily "ERV1"; repLeft "898"; repStart "-4165"; chr8 rmsk exon 124905438 124906057 4997 - . gene_id "HERVIP10FH_8q24.13a"; transcript_id "HERVIP10FH_8q24.13a"; locus "HERVIP10FH_8q24.13a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0096"; repClass "LTR"; repEnd "-2833"; repFamily "ERV1"; repLeft "-3425"; repStart "-7935"; chr8 rmsk exon 124906364 124906459 4997 - . gene_id "HERVIP10FH_8q24.13a"; transcript_id "HERVIP10FH_8q24.13a"; locus "HERVIP10FH_8q24.13a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0096"; repClass "LTR"; repEnd "-3426"; repFamily "ERV1"; repLeft "-3520"; repStart "-8528"; ### HERVIP10FH_8q24.13b ### chr8 rmsk gene 124907227 124911915 . + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0097"; model_cov "2448"; model_pct "48.0"; chr8 rmsk exon 124907227 124907638 1286 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-3991"; repStart "632"; chr8 rmsk exon 124907637 124907810 979 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-4510"; repStart "411"; chr8 rmsk exon 124907810 124908028 730 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "1000"; repFamily "ERV1"; repLeft "-4102"; repStart "782"; chr8 rmsk exon 124908797 124909943 8355 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "2203"; repFamily "ERV1"; repLeft "-2899"; repStart "1104"; chr8 rmsk exon 124909945 124910341 2895 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "3097"; repFamily "ERV1"; repLeft "-2005"; repStart "2702"; chr8 rmsk exon 124911270 124911343 326 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "5024"; chr8 rmsk exon 124911347 124911915 2380 + . gene_id "HERVIP10FH_8q24.13b"; transcript_id "HERVIP10FH_8q24.13b"; locus "HERVIP10FH_8q24.13b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0097"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_8q24.13 ### chr8 rmsk gene 124987055 124992252 . + . gene_id "ERVL_8q24.13"; transcript_id "ERVL_8q24.13"; locus "ERVL_8q24.13"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0257"; model_cov "4834"; model_pct "84.0"; chr8 rmsk exon 124987055 124987624 2972 + . gene_id "ERVL_8q24.13"; transcript_id "ERVL_8q24.13"; locus "ERVL_8q24.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0257"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "-5143"; repStart "44"; chr8 rmsk exon 124987618 124991707 24492 + . gene_id "ERVL_8q24.13"; transcript_id "ERVL_8q24.13"; locus "ERVL_8q24.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0257"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "1493"; chr8 rmsk exon 124991708 124992252 2230 + . gene_id "ERVL_8q24.13"; transcript_id "ERVL_8q24.13"; locus "ERVL_8q24.13"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0257"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_8q24.13g ### chr8 rmsk gene 125172673 125173696 . - . gene_id "ERVLE_8q24.13g"; transcript_id "ERVLE_8q24.13g"; locus "ERVLE_8q24.13g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2178"; model_cov "1067"; model_pct "18.8"; chr8 rmsk exon 125172673 125173696 2011 - . gene_id "ERVLE_8q24.13g"; transcript_id "ERVLE_8q24.13g"; locus "ERVLE_8q24.13g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2178"; repClass "LTR"; repEnd "5358"; repFamily "ERVL"; repLeft "4291"; repStart "-309"; ### HERVP71A_8q24.13 ### chr8 rmsk gene 125986715 125994823 . + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0043"; model_cov "5935"; model_pct "78.2"; chr8 rmsk exon 125986715 125987305 4260 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-46"; repStart "1"; chr8 rmsk exon 125987608 125987653 4260 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "565"; chr8 rmsk exon 125987654 125988682 6202 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "1079"; repFamily "ERV1"; repLeft "-6511"; repStart "-11"; chr8 rmsk exon 125988815 125989332 4294 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "1486"; repFamily "ERV1"; repLeft "-6104"; repStart "962"; chr8 rmsk exon 125989634 125989927 4294 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "1769"; repFamily "ERV1"; repLeft "-5821"; repStart "1487"; chr8 rmsk exon 125990248 125994212 22595 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "7589"; repFamily "ERV1"; repLeft "-1"; repStart "3550"; chr8 rmsk exon 125994213 125994823 4182 + . gene_id "HERVP71A_8q24.13"; transcript_id "HERVP71A_8q24.13"; locus "HERVP71A_8q24.13"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0043"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_8q24.13 ### chr8 rmsk gene 126007722 126013982 . + . gene_id "HML3_8q24.13"; transcript_id "HML3_8q24.13"; locus "HML3_8q24.13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0144"; model_cov "5343"; model_pct "88.7"; chr8 rmsk exon 126007722 126008234 4346 + . gene_id "HML3_8q24.13"; transcript_id "HML3_8q24.13"; locus "HML3_8q24.13"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0144"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 126008235 126008823 4486 + . gene_id "HML3_8q24.13"; transcript_id "HML3_8q24.13"; locus "HML3_8q24.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0144"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chr8 rmsk exon 126008824 126013477 35172 + . gene_id "HML3_8q24.13"; transcript_id "HML3_8q24.13"; locus "HML3_8q24.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0144"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "-1"; repStart "1280"; chr8 rmsk exon 126013479 126013982 4066 + . gene_id "HML3_8q24.13"; transcript_id "HML3_8q24.13"; locus "HML3_8q24.13"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0144"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_8q24.13b ### chr8 rmsk gene 126033341 126036390 . - . gene_id "ERVLB4_8q24.13b"; transcript_id "ERVLB4_8q24.13b"; locus "ERVLB4_8q24.13b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0983"; model_cov "2462"; model_pct "43.1"; chr8 rmsk exon 126033341 126035822 12193 - . gene_id "ERVLB4_8q24.13b"; transcript_id "ERVLB4_8q24.13b"; locus "ERVLB4_8q24.13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0983"; repClass "LTR"; repEnd "2468"; repFamily "ERVL"; repLeft "6"; repStart "-3246"; chr8 rmsk exon 126035828 126035869 2127 - . gene_id "ERVLB4_8q24.13b"; transcript_id "ERVLB4_8q24.13b"; locus "ERVLB4_8q24.13b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0983"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "475"; repStart "0"; chr8 rmsk exon 126035970 126036390 2127 - . gene_id "ERVLB4_8q24.13b"; transcript_id "ERVLB4_8q24.13b"; locus "ERVLB4_8q24.13b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_0983"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "1"; repStart "-41"; ### LTR57_8q24.13 ### chr8 rmsk gene 126094864 126100453 . + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0100"; model_cov "4537"; model_pct "84.9"; chr8 rmsk exon 126094864 126095249 2340 + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0100"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "19"; chr8 rmsk exon 126095250 126095633 17744 + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0100"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-4957"; repStart "1"; chr8 rmsk exon 126095947 126098677 17744 + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0100"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "-2176"; repStart "387"; chr8 rmsk exon 126098666 126100052 8075 + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0100"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "3971"; chr8 rmsk exon 126100053 126100453 2344 + . gene_id "LTR57_8q24.13"; transcript_id "LTR57_8q24.13"; locus "LTR57_8q24.13"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0100"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_8q24.13 ### chr8 rmsk gene 126218795 126223153 . - . gene_id "MER41_8q24.13"; transcript_id "MER41_8q24.13"; locus "MER41_8q24.13"; category "internal"; intModel "MER41-int"; locid "MER41-int_0308"; model_cov "6578"; model_pct "100.0"; chr8 rmsk exon 126218795 126223153 15302 - . gene_id "MER41_8q24.13"; transcript_id "MER41_8q24.13"; locus "MER41_8q24.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0308"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-633"; repStart "-1"; ### ERV316A3_8q24.21a ### chr8 rmsk gene 126725308 126726071 . - . gene_id "ERV316A3_8q24.21a"; transcript_id "ERV316A3_8q24.21a"; locus "ERV316A3_8q24.21a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1644"; model_cov "707"; model_pct "13.5"; chr8 rmsk exon 126725308 126726071 1705 - . gene_id "ERV316A3_8q24.21a"; transcript_id "ERV316A3_8q24.21a"; locus "ERV316A3_8q24.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1644"; repClass "LTR"; repEnd "3884"; repFamily "ERVL"; repLeft "3177"; repStart "-1342"; ### ERV316A3_8q24.21b ### chr8 rmsk gene 126726140 126727872 . + . gene_id "ERV316A3_8q24.21b"; transcript_id "ERV316A3_8q24.21b"; locus "ERV316A3_8q24.21b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1645"; model_cov "983"; model_pct "18.8"; chr8 rmsk exon 126726140 126727025 1618 + . gene_id "ERV316A3_8q24.21b"; transcript_id "ERV316A3_8q24.21b"; locus "ERV316A3_8q24.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1645"; repClass "LTR"; repEnd "2001"; repFamily "ERVL"; repLeft "-3225"; repStart "1130"; chr8 rmsk exon 126727731 126727872 1618 + . gene_id "ERV316A3_8q24.21b"; transcript_id "ERV316A3_8q24.21b"; locus "ERV316A3_8q24.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1645"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "-3112"; repStart "2002"; ### HERVH_8q24.21a ### chr8 rmsk gene 127431703 127437464 . + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0725"; model_cov "4893"; model_pct "63.4"; chr8 rmsk exon 127431703 127432147 3498 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 127432150 127435119 20666 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8 rmsk exon 127435114 127435261 932 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr8 rmsk exon 127435268 127435758 3424 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr8 rmsk exon 127435761 127436417 4366 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 127436419 127436636 1478 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 127436635 127437014 2539 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 127437015 127437464 3529 + . gene_id "HERVH_8q24.21a"; transcript_id "HERVH_8q24.21a"; locus "HERVH_8q24.21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0725"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV9_8q24.21 ### chr8 rmsk gene 128375035 128377135 . + . gene_id "HERV9_8q24.21"; transcript_id "HERV9_8q24.21"; locus "HERV9_8q24.21"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0113"; model_cov "3499"; model_pct "41.5"; chr8 rmsk exon 128375035 128375225 1414 + . gene_id "HERV9_8q24.21"; transcript_id "HERV9_8q24.21"; locus "HERV9_8q24.21"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0113"; repClass "LTR"; repEnd "192"; repFamily "ERV1"; repLeft "-327"; repStart "1"; chr8 rmsk exon 128375228 128377135 9831 + . gene_id "HERV9_8q24.21"; transcript_id "HERV9_8q24.21"; locus "HERV9_8q24.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0113"; repClass "LTR"; repEnd "8167"; repFamily "ERV1"; repLeft "-269"; repStart "4668"; ### HERVW_8q24.21 ### chr8 rmsk gene 128377852 128381876 . - . gene_id "HERVW_8q24.21"; transcript_id "HERVW_8q24.21"; locus "HERVW_8q24.21"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0186"; model_cov "3858"; model_pct "44.7"; chr8 rmsk exon 128377852 128378569 3316 - . gene_id "HERVW_8q24.21"; transcript_id "HERVW_8q24.21"; locus "HERVW_8q24.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0186"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7898"; repStart "0"; chr8 rmsk exon 128378563 128380502 7891 - . gene_id "HERVW_8q24.21"; transcript_id "HERVW_8q24.21"; locus "HERVW_8q24.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0186"; repClass "LTR"; repEnd "4259"; repFamily "ERV1"; repLeft "2243"; repStart "-4367"; chr8 rmsk exon 128380500 128380850 1614 - . gene_id "HERVW_8q24.21"; transcript_id "HERVW_8q24.21"; locus "HERVW_8q24.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0186"; repClass "LTR"; repEnd "2020"; repFamily "ERV1"; repLeft "1676"; repStart "-6606"; chr8 rmsk exon 128381138 128381876 1941 - . gene_id "HERVW_8q24.21"; transcript_id "HERVW_8q24.21"; locus "HERVW_8q24.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0186"; repClass "LTR"; repEnd "1161"; repFamily "ERV1"; repLeft "391"; repStart "-7465"; ### HERVH_8q24.21b ### chr8 rmsk gene 128611901 128617630 . - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0726"; model_cov "4922"; model_pct "63.8"; chr8 rmsk exon 128611901 128612351 3340 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 128612352 128612731 2453 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 128612730 128612945 1339 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 128612947 128613605 4218 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 128613608 128614112 3258 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 128614103 128614261 950 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3134"; repStart "-4423"; chr8 rmsk exon 128614232 128617177 20097 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 128617180 128617630 3359 - . gene_id "HERVH_8q24.21b"; transcript_id "HERVH_8q24.21b"; locus "HERVH_8q24.21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0726"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_8q24.21c ### chr8 rmsk gene 128914459 128920320 . + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0727"; model_cov "5256"; model_pct "68.1"; chr8 rmsk exon 128914459 128914868 2667 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 128914871 128918653 22992 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr8 rmsk exon 128918656 128919311 4088 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr8 rmsk exon 128919316 128919530 1174 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 128919533 128919907 2201 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr8 rmsk exon 128919908 128920320 2605 + . gene_id "HERVH_8q24.21c"; transcript_id "HERVH_8q24.21c"; locus "HERVH_8q24.21c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0727"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_8q24.21 ### chr8 rmsk gene 129230956 129231613 . + . gene_id "ERVLB4_8q24.21"; transcript_id "ERVLB4_8q24.21"; locus "ERVLB4_8q24.21"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0984"; model_cov "693"; model_pct "12.1"; chr8 rmsk exon 129230956 129231613 3723 + . gene_id "ERVLB4_8q24.21"; transcript_id "ERVLB4_8q24.21"; locus "ERVLB4_8q24.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0984"; repClass "LTR"; repEnd "4625"; repFamily "ERVL"; repLeft "-1089"; repStart "3932"; ### ERV316A3_8q24.21c ### chr8 rmsk gene 129265172 129266245 . - . gene_id "ERV316A3_8q24.21c"; transcript_id "ERV316A3_8q24.21c"; locus "ERV316A3_8q24.21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1646"; model_cov "787"; model_pct "15.1"; chr8 rmsk exon 129265172 129265948 2289 - . gene_id "ERV316A3_8q24.21c"; transcript_id "ERV316A3_8q24.21c"; locus "ERV316A3_8q24.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1646"; repClass "LTR"; repEnd "4304"; repFamily "ERVL"; repLeft "3517"; repStart "-922"; chr8 rmsk exon 129265952 129266245 538 - . gene_id "ERV316A3_8q24.21c"; transcript_id "ERV316A3_8q24.21c"; locus "ERV316A3_8q24.21c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1646"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "3"; repStart "-140"; ### HERVL40_8q24.21 ### chr8 rmsk gene 129932201 129934402 . + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0253"; model_cov "1363"; model_pct "24.6"; chr8 rmsk exon 129932201 129932716 2007 + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0253"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 129932731 129932990 327 + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0253"; repClass "LTR"; repEnd "283"; repFamily "ERVL"; repLeft "-5247"; repStart "17"; chr8 rmsk exon 129933021 129933594 1521 + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0253"; repClass "LTR"; repEnd "1527"; repFamily "ERVL"; repLeft "-4003"; repStart "916"; chr8 rmsk exon 129933923 129934018 1521 + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0253"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-3920"; repStart "1528"; chr8 rmsk exon 129934018 129934402 1246 + . gene_id "HERVL40_8q24.21"; transcript_id "HERVL40_8q24.21"; locus "HERVL40_8q24.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0253"; repClass "LTR"; repEnd "2926"; repFamily "ERVL"; repLeft "-2604"; repStart "2522"; ### ERV316A3_8q24.22a ### chr8 rmsk gene 130739974 130740522 . + . gene_id "ERV316A3_8q24.22a"; transcript_id "ERV316A3_8q24.22a"; locus "ERV316A3_8q24.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1647"; model_cov "631"; model_pct "12.1"; chr8 rmsk exon 130739974 130740068 296 + . gene_id "ERV316A3_8q24.22a"; transcript_id "ERV316A3_8q24.22a"; locus "ERV316A3_8q24.22a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1647"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "-186"; repStart "164"; chr8 rmsk exon 130740069 130740522 946 + . gene_id "ERV316A3_8q24.22a"; transcript_id "ERV316A3_8q24.22a"; locus "ERV316A3_8q24.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1647"; repClass "LTR"; repEnd "3121"; repFamily "ERVL"; repLeft "-2105"; repStart "2490"; ### HUERSP3_8q24.22 ### chr8 rmsk gene 130827138 130830670 . + . gene_id "HUERSP3_8q24.22"; transcript_id "HUERSP3_8q24.22"; locus "HUERSP3_8q24.22"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0115"; model_cov "1579"; model_pct "17.7"; chr8 rmsk exon 130827138 130827728 3369 + . gene_id "HUERSP3_8q24.22"; transcript_id "HUERSP3_8q24.22"; locus "HUERSP3_8q24.22"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0115"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 130827744 130829163 8160 + . gene_id "HUERSP3_8q24.22"; transcript_id "HUERSP3_8q24.22"; locus "HUERSP3_8q24.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0115"; repClass "LTR"; repEnd "1396"; repFamily "ERV1"; repLeft "-7523"; repStart "15"; chr8 rmsk exon 130829892 130830088 1362 + . gene_id "HUERSP3_8q24.22"; transcript_id "HUERSP3_8q24.22"; locus "HUERSP3_8q24.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0115"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8720"; chr8 rmsk exon 130830090 130830670 3256 + . gene_id "HUERSP3_8q24.22"; transcript_id "HUERSP3_8q24.22"; locus "HUERSP3_8q24.22"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0115"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_8q24.22b ### chr8 rmsk gene 131011708 131012949 . + . gene_id "ERV316A3_8q24.22b"; transcript_id "ERV316A3_8q24.22b"; locus "ERV316A3_8q24.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1648"; model_cov "623"; model_pct "11.9"; chr8 rmsk exon 131011708 131012365 894 + . gene_id "ERV316A3_8q24.22b"; transcript_id "ERV316A3_8q24.22b"; locus "ERV316A3_8q24.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1648"; repClass "LTR"; repEnd "5031"; repFamily "ERVL"; repLeft "-195"; repStart "4408"; chr8 rmsk exon 131012541 131012949 1488 + . gene_id "ERV316A3_8q24.22b"; transcript_id "ERV316A3_8q24.22b"; locus "ERV316A3_8q24.22b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1648"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-6"; repStart "2"; ### ERV316A3_8q24.22c ### chr8 rmsk gene 131072541 131073546 . - . gene_id "ERV316A3_8q24.22c"; transcript_id "ERV316A3_8q24.22c"; locus "ERV316A3_8q24.22c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1649"; model_cov "583"; model_pct "11.2"; chr8 rmsk exon 131072541 131072947 1263 - . gene_id "ERV316A3_8q24.22c"; transcript_id "ERV316A3_8q24.22c"; locus "ERV316A3_8q24.22c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1649"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr8 rmsk exon 131072950 131073546 1114 - . gene_id "ERV316A3_8q24.22c"; transcript_id "ERV316A3_8q24.22c"; locus "ERV316A3_8q24.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1649"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "4641"; repStart "-2"; ### HERVL_8q24.22 ### chr8 rmsk gene 131156923 131161048 . - . gene_id "HERVL_8q24.22"; transcript_id "HERVL_8q24.22"; locus "HERVL_8q24.22"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0781"; model_cov "3229"; model_pct "57.1"; chr8 rmsk exon 131156923 131158712 23612 - . gene_id "HERVL_8q24.22"; transcript_id "HERVL_8q24.22"; locus "HERVL_8q24.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0781"; repClass "LTR"; repEnd "3231"; repFamily "ERVL"; repLeft "1456"; repStart "-2423"; chr8 rmsk exon 131158995 131160449 23612 - . gene_id "HERVL_8q24.22"; transcript_id "HERVL_8q24.22"; locus "HERVL_8q24.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0781"; repClass "LTR"; repEnd "1455"; repFamily "ERVL"; repLeft "1"; repStart "-4199"; chr8 rmsk exon 131160668 131161048 2821 - . gene_id "HERVL_8q24.22"; transcript_id "HERVL_8q24.22"; locus "HERVL_8q24.22"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0781"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "1"; repStart "-61"; ### ERV316A3_8q24.22d ### chr8 rmsk gene 131274175 131276707 . + . gene_id "ERV316A3_8q24.22d"; transcript_id "ERV316A3_8q24.22d"; locus "ERV316A3_8q24.22d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1650"; model_cov "1141"; model_pct "21.8"; chr8 rmsk exon 131274175 131274314 377 + . gene_id "ERV316A3_8q24.22d"; transcript_id "ERV316A3_8q24.22d"; locus "ERV316A3_8q24.22d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1650"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-43"; repStart "249"; chr8 rmsk exon 131274805 131275022 645 + . gene_id "ERV316A3_8q24.22d"; transcript_id "ERV316A3_8q24.22d"; locus "ERV316A3_8q24.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1650"; repClass "LTR"; repEnd "4113"; repFamily "ERVL"; repLeft "-1113"; repStart "3897"; chr8 rmsk exon 131275290 131276209 1388 + . gene_id "ERV316A3_8q24.22d"; transcript_id "ERV316A3_8q24.22d"; locus "ERV316A3_8q24.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1650"; repClass "LTR"; repEnd "5083"; repFamily "ERVL"; repLeft "-143"; repStart "4158"; chr8 rmsk exon 131276370 131276707 648 + . gene_id "ERV316A3_8q24.22d"; transcript_id "ERV316A3_8q24.22d"; locus "ERV316A3_8q24.22d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1650"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "88"; ### HERVH_8q24.22a ### chr8 rmsk gene 131310175 131315847 . + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0728"; model_cov "5061"; model_pct "65.6"; chr8 rmsk exon 131310175 131310564 2580 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 131310567 131313738 20874 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr8 rmsk exon 131313729 131314237 3250 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr8 rmsk exon 131314240 131314902 4363 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 131314904 131315120 1352 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 131315119 131315497 2427 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8 rmsk exon 131315498 131315847 1878 + . gene_id "HERVH_8q24.22a"; transcript_id "HERVH_8q24.22a"; locus "HERVH_8q24.22a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0728"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_8q24.22a ### chr8 rmsk gene 131459667 131462573 . - . gene_id "ERVLE_8q24.22a"; transcript_id "ERVLE_8q24.22a"; locus "ERVLE_8q24.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2180"; model_cov "1789"; model_pct "31.6"; chr8 rmsk exon 131459667 131459815 401 - . gene_id "ERVLE_8q24.22a"; transcript_id "ERVLE_8q24.22a"; locus "ERVLE_8q24.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2180"; repClass "LTR"; repEnd "4605"; repFamily "ERVL"; repLeft "4468"; repStart "-1062"; chr8 rmsk exon 131459882 131460008 286 - . gene_id "ERVLE_8q24.22a"; transcript_id "ERVLE_8q24.22a"; locus "ERVLE_8q24.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2180"; repClass "LTR"; repEnd "2868"; repFamily "ERVL"; repLeft "2747"; repStart "-2799"; chr8 rmsk exon 131460698 131461725 1223 - . gene_id "ERVLE_8q24.22a"; transcript_id "ERVLE_8q24.22a"; locus "ERVLE_8q24.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2180"; repClass "LTR"; repEnd "2243"; repFamily "ERVL"; repLeft "1177"; repStart "-3424"; chr8 rmsk exon 131462124 131462573 1223 - . gene_id "ERVLE_8q24.22a"; transcript_id "ERVLE_8q24.22a"; locus "ERVLE_8q24.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2180"; repClass "LTR"; repEnd "1176"; repFamily "ERVL"; repLeft "711"; repStart "-4491"; ### HERVH_8q24.22b ### chr8 rmsk gene 131740755 131746622 . + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0729"; model_cov "5116"; model_pct "66.3"; chr8 rmsk exon 131740755 131741151 2581 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8 rmsk exon 131741154 131744138 20661 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr8 rmsk exon 131744118 131744965 6159 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr8 rmsk exon 131744968 131745631 4327 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 131745633 131745848 1395 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 131745849 131746224 2379 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 131746225 131746622 2701 + . gene_id "HERVH_8q24.22b"; transcript_id "HERVH_8q24.22b"; locus "HERVH_8q24.22b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0729"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q24.22c ### chr8 rmsk gene 131820155 131825105 . + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0730"; model_cov "4266"; model_pct "55.3"; chr8 rmsk exon 131820155 131820417 1646 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "303"; repFamily "ERV1"; repLeft "-147"; repStart "1"; chr8 rmsk exon 131820418 131822606 15141 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "851"; chr8 rmsk exon 131822586 131823437 5901 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr8 rmsk exon 131823440 131824101 4687 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8 rmsk exon 131824103 131824318 1431 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8 rmsk exon 131824319 131824695 2513 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr8 rmsk exon 131824696 131825105 3159 + . gene_id "HERVH_8q24.22c"; transcript_id "HERVH_8q24.22c"; locus "HERVH_8q24.22c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0730"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8q24.22d ### chr8 rmsk gene 132080238 132086002 . - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0731"; model_cov "4873"; model_pct "63.2"; chr8 rmsk exon 132080238 132080688 3578 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 132080691 132081063 2702 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "7322"; repStart "-2"; chr8 rmsk exon 132081062 132081279 1406 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 132081303 132081923 4221 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "4488"; repStart "-2605"; chr8 rmsk exon 132081926 132082430 3520 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 132082421 132082570 971 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 132082550 132085549 20244 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8 rmsk exon 132085552 132086002 3604 - . gene_id "HERVH_8q24.22d"; transcript_id "HERVH_8q24.22d"; locus "HERVH_8q24.22d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0731"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_8q24.22 ### chr8 rmsk gene 132149174 132154866 . + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0236"; model_cov "4938"; model_pct "94.7"; chr8 rmsk exon 132149174 132149482 1475 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0236"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "-30"; repStart "1"; chr8 rmsk exon 132149495 132149584 279 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0236"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-5125"; repStart "1"; chr8 rmsk exon 132149825 132150439 2987 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0236"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "251"; chr8 rmsk exon 132150440 132154193 26113 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0236"; repClass "LTR"; repEnd "4818"; repFamily "ERV1"; repLeft "-399"; repStart "958"; chr8 rmsk exon 132154224 132154563 26113 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0236"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4819"; chr8 rmsk exon 132154564 132154866 1445 + . gene_id "MER61_8q24.22"; transcript_id "MER61_8q24.22"; locus "MER61_8q24.22"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0236"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; ### ERV316A3_8q24.22e ### chr8 rmsk gene 132536735 132537691 . + . gene_id "ERV316A3_8q24.22e"; transcript_id "ERV316A3_8q24.22e"; locus "ERV316A3_8q24.22e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1651"; model_cov "625"; model_pct "12.0"; chr8 rmsk exon 132536735 132537219 1460 + . gene_id "ERV316A3_8q24.22e"; transcript_id "ERV316A3_8q24.22e"; locus "ERV316A3_8q24.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1651"; repClass "LTR"; repEnd "1441"; repFamily "ERVL"; repLeft "-3785"; repStart "945"; chr8 rmsk exon 132537381 132537506 584 + . gene_id "ERV316A3_8q24.22e"; transcript_id "ERV316A3_8q24.22e"; locus "ERV316A3_8q24.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1651"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5097"; chr8 rmsk exon 132537507 132537691 288 + . gene_id "ERV316A3_8q24.22e"; transcript_id "ERV316A3_8q24.22e"; locus "ERV316A3_8q24.22e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1651"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "-236"; repStart "1"; ### ERVLE_8q24.22b ### chr8 rmsk gene 132568395 132571059 . + . gene_id "ERVLE_8q24.22b"; transcript_id "ERVLE_8q24.22b"; locus "ERVLE_8q24.22b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2185"; model_cov "1500"; model_pct "26.5"; chr8 rmsk exon 132568395 132569545 4157 + . gene_id "ERVLE_8q24.22b"; transcript_id "ERVLE_8q24.22b"; locus "ERVLE_8q24.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2185"; repClass "LTR"; repEnd "5321"; repFamily "ERVL"; repLeft "-346"; repStart "4161"; chr8 rmsk exon 132569877 132570085 968 + . gene_id "ERVLE_8q24.22b"; transcript_id "ERVLE_8q24.22b"; locus "ERVLE_8q24.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2185"; repClass "LTR"; repEnd "5536"; repFamily "ERVL"; repLeft "-131"; repStart "5323"; chr8 rmsk exon 132570414 132570544 968 + . gene_id "ERVLE_8q24.22b"; transcript_id "ERVLE_8q24.22b"; locus "ERVLE_8q24.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2185"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-3"; repStart "5537"; chr8 rmsk exon 132570550 132571059 1221 + . gene_id "ERVLE_8q24.22b"; transcript_id "ERVLE_8q24.22b"; locus "ERVLE_8q24.22b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2185"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "-50"; repStart "3"; ### ERVLE_8q24.22c ### chr8 rmsk gene 133179697 133180913 . + . gene_id "ERVLE_8q24.22c"; transcript_id "ERVLE_8q24.22c"; locus "ERVLE_8q24.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2186"; model_cov "977"; model_pct "17.2"; chr8 rmsk exon 133179697 133180025 1077 + . gene_id "ERVLE_8q24.22c"; transcript_id "ERVLE_8q24.22c"; locus "ERVLE_8q24.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2186"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "-5161"; repStart "179"; chr8 rmsk exon 133180307 133180913 1807 + . gene_id "ERVLE_8q24.22c"; transcript_id "ERVLE_8q24.22c"; locus "ERVLE_8q24.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2186"; repClass "LTR"; repEnd "1496"; repFamily "ERVL"; repLeft "-4171"; repStart "846"; ### ERV316A3_8q24.22f ### chr8 rmsk gene 133844328 133846701 . - . gene_id "ERV316A3_8q24.22f"; transcript_id "ERV316A3_8q24.22f"; locus "ERV316A3_8q24.22f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1652"; model_cov "1365"; model_pct "26.1"; chr8 rmsk exon 133844328 133844710 1476 - . gene_id "ERV316A3_8q24.22f"; transcript_id "ERV316A3_8q24.22f"; locus "ERV316A3_8q24.22f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1652"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "50"; repStart "-6"; chr8 rmsk exon 133845127 133845154 1476 - . gene_id "ERV316A3_8q24.22f"; transcript_id "ERV316A3_8q24.22f"; locus "ERV316A3_8q24.22f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1652"; repClass "LTR"; repEnd "49"; repFamily "ERVL"; repLeft "24"; repStart "-402"; chr8 rmsk exon 133845256 133846701 1783 - . gene_id "ERV316A3_8q24.22f"; transcript_id "ERV316A3_8q24.22f"; locus "ERV316A3_8q24.22f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1652"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "3804"; repStart "-57"; ### ERV316A3_8q24.22g ### chr8 rmsk gene 133862286 133864323 . - . gene_id "ERV316A3_8q24.22g"; transcript_id "ERV316A3_8q24.22g"; locus "ERV316A3_8q24.22g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1653"; model_cov "1572"; model_pct "30.1"; chr8 rmsk exon 133862286 133862389 524 - . gene_id "ERV316A3_8q24.22g"; transcript_id "ERV316A3_8q24.22g"; locus "ERV316A3_8q24.22g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1653"; repClass "LTR"; repEnd "277"; repFamily "ERVL"; repLeft "162"; repStart "-174"; chr8 rmsk exon 133862722 133864323 3524 - . gene_id "ERV316A3_8q24.22g"; transcript_id "ERV316A3_8q24.22g"; locus "ERV316A3_8q24.22g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1653"; repClass "LTR"; repEnd "3590"; repFamily "ERVL"; repLeft "2018"; repStart "-1636"; ### ERVLE_8q24.22d ### chr8 rmsk gene 134118199 134119679 . + . gene_id "ERVLE_8q24.22d"; transcript_id "ERVLE_8q24.22d"; locus "ERVLE_8q24.22d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2188"; model_cov "798"; model_pct "14.1"; chr8 rmsk exon 134118199 134118465 989 + . gene_id "ERVLE_8q24.22d"; transcript_id "ERVLE_8q24.22d"; locus "ERVLE_8q24.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2188"; repClass "LTR"; repEnd "2490"; repFamily "ERVL"; repLeft "-3177"; repStart "2221"; chr8 rmsk exon 134118683 134118902 989 + . gene_id "ERVLE_8q24.22d"; transcript_id "ERVLE_8q24.22d"; locus "ERVLE_8q24.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2188"; repClass "LTR"; repEnd "2710"; repFamily "ERVL"; repLeft "-2957"; repStart "2491"; chr8 rmsk exon 134119389 134119679 437 + . gene_id "ERVLE_8q24.22d"; transcript_id "ERVLE_8q24.22d"; locus "ERVLE_8q24.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2188"; repClass "LTR"; repEnd "3345"; repFamily "ERVL"; repLeft "-2322"; repStart "3035"; ### ERVLE_8q24.22e ### chr8 rmsk gene 134357461 134358363 . - . gene_id "ERVLE_8q24.22e"; transcript_id "ERVLE_8q24.22e"; locus "ERVLE_8q24.22e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2189"; model_cov "855"; model_pct "15.1"; chr8 rmsk exon 134357461 134357834 627 - . gene_id "ERVLE_8q24.22e"; transcript_id "ERVLE_8q24.22e"; locus "ERVLE_8q24.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2189"; repClass "LTR"; repEnd "4030"; repFamily "ERVL"; repLeft "3624"; repStart "-1637"; chr8 rmsk exon 134357911 134358363 611 - . gene_id "ERVLE_8q24.22e"; transcript_id "ERVLE_8q24.22e"; locus "ERVLE_8q24.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2189"; repClass "LTR"; repEnd "1871"; repFamily "ERVL"; repLeft "1422"; repStart "-3796"; ### ERVLE_8q24.22f ### chr8 rmsk gene 134414641 134416096 . - . gene_id "ERVLE_8q24.22f"; transcript_id "ERVLE_8q24.22f"; locus "ERVLE_8q24.22f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2191"; model_cov "1427"; model_pct "25.2"; chr8 rmsk exon 134414641 134414850 684 - . gene_id "ERVLE_8q24.22f"; transcript_id "ERVLE_8q24.22f"; locus "ERVLE_8q24.22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2191"; repClass "LTR"; repEnd "4837"; repFamily "ERVL"; repLeft "4615"; repStart "-830"; chr8 rmsk exon 134414925 134415430 1481 - . gene_id "ERVLE_8q24.22f"; transcript_id "ERVLE_8q24.22f"; locus "ERVLE_8q24.22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2191"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "4089"; repStart "-1068"; chr8 rmsk exon 134415431 134416096 2062 - . gene_id "ERVLE_8q24.22f"; transcript_id "ERVLE_8q24.22f"; locus "ERVLE_8q24.22f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2191"; repClass "LTR"; repEnd "3513"; repFamily "ERVL"; repLeft "2818"; repStart "-2154"; ### ERVLE_8q24.22g ### chr8 rmsk gene 134419194 134421179 . - . gene_id "ERVLE_8q24.22g"; transcript_id "ERVLE_8q24.22g"; locus "ERVLE_8q24.22g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2192"; model_cov "1855"; model_pct "32.7"; chr8 rmsk exon 134419194 134420842 4451 - . gene_id "ERVLE_8q24.22g"; transcript_id "ERVLE_8q24.22g"; locus "ERVLE_8q24.22g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2192"; repClass "LTR"; repEnd "2554"; repFamily "ERVL"; repLeft "902"; repStart "-3113"; chr8 rmsk exon 134420985 134421179 572 - . gene_id "ERVLE_8q24.22g"; transcript_id "ERVLE_8q24.22g"; locus "ERVLE_8q24.22g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2192"; repClass "LTR"; repEnd "712"; repFamily "ERVL"; repLeft "509"; repStart "-4955"; ### ERV316A3_8q24.22h ### chr8 rmsk gene 134897046 134898065 . - . gene_id "ERV316A3_8q24.22h"; transcript_id "ERV316A3_8q24.22h"; locus "ERV316A3_8q24.22h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1654"; model_cov "1045"; model_pct "20.0"; chr8 rmsk exon 134897046 134897842 1658 - . gene_id "ERV316A3_8q24.22h"; transcript_id "ERV316A3_8q24.22h"; locus "ERV316A3_8q24.22h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1654"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "3795"; repStart "-605"; chr8 rmsk exon 134897842 134898065 697 - . gene_id "ERV316A3_8q24.22h"; transcript_id "ERV316A3_8q24.22h"; locus "ERV316A3_8q24.22h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1654"; repClass "LTR"; repEnd "1474"; repFamily "ERVL"; repLeft "1255"; repStart "-3752"; ### ERV316A3_8q24.22i ### chr8 rmsk gene 135039959 135042697 . + . gene_id "ERV316A3_8q24.22i"; transcript_id "ERV316A3_8q24.22i"; locus "ERV316A3_8q24.22i"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1655"; model_cov "972"; model_pct "18.6"; chr8 rmsk exon 135039959 135040385 857 + . gene_id "ERV316A3_8q24.22i"; transcript_id "ERV316A3_8q24.22i"; locus "ERV316A3_8q24.22i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1655"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr8 rmsk exon 135040979 135041643 1823 + . gene_id "ERV316A3_8q24.22i"; transcript_id "ERV316A3_8q24.22i"; locus "ERV316A3_8q24.22i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1655"; repClass "LTR"; repEnd "3622"; repFamily "ERVL"; repLeft "-1604"; repStart "2984"; chr8 rmsk exon 135041997 135042312 1823 + . gene_id "ERV316A3_8q24.22i"; transcript_id "ERV316A3_8q24.22i"; locus "ERV316A3_8q24.22i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1655"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "-1269"; repStart "3623"; chr8 rmsk exon 135042366 135042697 928 + . gene_id "ERV316A3_8q24.22i"; transcript_id "ERV316A3_8q24.22i"; locus "ERV316A3_8q24.22i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1655"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-78"; repStart "25"; ### ERV316A3_8q24.22j ### chr8 rmsk gene 135064013 135066866 . - . gene_id "ERV316A3_8q24.22j"; transcript_id "ERV316A3_8q24.22j"; locus "ERV316A3_8q24.22j"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1656"; model_cov "1596"; model_pct "30.5"; chr8 rmsk exon 135064013 135064418 846 - . gene_id "ERV316A3_8q24.22j"; transcript_id "ERV316A3_8q24.22j"; locus "ERV316A3_8q24.22j"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1656"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "1"; repStart "-15"; chr8 rmsk exon 135064478 135066054 2941 - . gene_id "ERV316A3_8q24.22j"; transcript_id "ERV316A3_8q24.22j"; locus "ERV316A3_8q24.22j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1656"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "3576"; repStart "-54"; chr8 rmsk exon 135066408 135066866 1305 - . gene_id "ERV316A3_8q24.22j"; transcript_id "ERV316A3_8q24.22j"; locus "ERV316A3_8q24.22j"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1656"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "3"; repStart "-6"; ### ERVLE_8q24.22h ### chr8 rmsk gene 135275188 135275838 . + . gene_id "ERVLE_8q24.22h"; transcript_id "ERVLE_8q24.22h"; locus "ERVLE_8q24.22h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2194"; model_cov "651"; model_pct "11.5"; chr8 rmsk exon 135275188 135275838 1598 + . gene_id "ERVLE_8q24.22h"; transcript_id "ERVLE_8q24.22h"; locus "ERVLE_8q24.22h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2194"; repClass "LTR"; repEnd "5245"; repFamily "ERVL"; repLeft "-422"; repStart "4594"; ### ERVLE_8q24.22i ### chr8 rmsk gene 135353782 135355434 . - . gene_id "ERVLE_8q24.22i"; transcript_id "ERVLE_8q24.22i"; locus "ERVLE_8q24.22i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2195"; model_cov "1452"; model_pct "25.6"; chr8 rmsk exon 135353782 135354124 769 - . gene_id "ERVLE_8q24.22i"; transcript_id "ERVLE_8q24.22i"; locus "ERVLE_8q24.22i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2195"; repClass "LTR"; repEnd "5502"; repFamily "ERVL"; repLeft "5172"; repStart "-165"; chr8 rmsk exon 135354356 135354515 384 - . gene_id "ERVLE_8q24.22i"; transcript_id "ERVLE_8q24.22i"; locus "ERVLE_8q24.22i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2195"; repClass "LTR"; repEnd "4204"; repFamily "ERVL"; repLeft "4028"; repStart "-1463"; chr8 rmsk exon 135354527 135355434 2193 - . gene_id "ERVLE_8q24.22i"; transcript_id "ERVLE_8q24.22i"; locus "ERVLE_8q24.22i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2195"; repClass "LTR"; repEnd "3684"; repFamily "ERVL"; repLeft "2738"; repStart "-1983"; ### ERVLE_8q24.22j ### chr8 rmsk gene 135378469 135380784 . - . gene_id "ERVLE_8q24.22j"; transcript_id "ERVLE_8q24.22j"; locus "ERVLE_8q24.22j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2196"; model_cov "2291"; model_pct "40.4"; chr8 rmsk exon 135378469 135378828 840 - . gene_id "ERVLE_8q24.22j"; transcript_id "ERVLE_8q24.22j"; locus "ERVLE_8q24.22j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2196"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "3038"; repStart "-2255"; chr8 rmsk exon 135378873 135379571 957 - . gene_id "ERVLE_8q24.22j"; transcript_id "ERVLE_8q24.22j"; locus "ERVLE_8q24.22j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2196"; repClass "LTR"; repEnd "2945"; repFamily "ERVL"; repLeft "2209"; repStart "-2722"; chr8 rmsk exon 135379598 135380485 820 - . gene_id "ERVLE_8q24.22j"; transcript_id "ERVLE_8q24.22j"; locus "ERVLE_8q24.22j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2196"; repClass "LTR"; repEnd "2163"; repFamily "ERVL"; repLeft "1220"; repStart "-3504"; chr8 rmsk exon 135380559 135380784 371 - . gene_id "ERVLE_8q24.22j"; transcript_id "ERVLE_8q24.22j"; locus "ERVLE_8q24.22j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2196"; repClass "LTR"; repEnd "1781"; repFamily "ERVL"; repLeft "1543"; repStart "-3886"; ### ERVLE_8q24.23a ### chr8 rmsk gene 135544134 135545070 . - . gene_id "ERVLE_8q24.23a"; transcript_id "ERVLE_8q24.23a"; locus "ERVLE_8q24.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2197"; model_cov "883"; model_pct "15.6"; chr8 rmsk exon 135544134 135544673 849 - . gene_id "ERVLE_8q24.23a"; transcript_id "ERVLE_8q24.23a"; locus "ERVLE_8q24.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2197"; repClass "LTR"; repEnd "4528"; repFamily "ERVL"; repLeft "3969"; repStart "-1139"; chr8 rmsk exon 135544765 135545070 606 - . gene_id "ERVLE_8q24.23a"; transcript_id "ERVLE_8q24.23a"; locus "ERVLE_8q24.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2197"; repClass "LTR"; repEnd "2126"; repFamily "ERVL"; repLeft "1802"; repStart "-3541"; ### HERVH_8q24.23a ### chr8 rmsk gene 135767191 135773012 . - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0732"; model_cov "4686"; model_pct "60.8"; chr8 rmsk exon 135767191 135767622 2730 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 135767623 135768211 2623 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8 rmsk exon 135768216 135768844 2897 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr8 rmsk exon 135768847 135769349 3489 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8 rmsk exon 135769340 135769487 879 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr8 rmsk exon 135769482 135772579 17436 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr8 rmsk exon 135772580 135773012 2701 - . gene_id "HERVH_8q24.23a"; transcript_id "HERVH_8q24.23a"; locus "HERVH_8q24.23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0732"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-21"; repStart "0"; ### ERV316A3_8q24.23a ### chr8 rmsk gene 135871822 135872956 . - . gene_id "ERV316A3_8q24.23a"; transcript_id "ERV316A3_8q24.23a"; locus "ERV316A3_8q24.23a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1657"; model_cov "685"; model_pct "13.1"; chr8 rmsk exon 135871822 135871991 398 - . gene_id "ERV316A3_8q24.23a"; transcript_id "ERV316A3_8q24.23a"; locus "ERV316A3_8q24.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1657"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "225"; repStart "-30"; chr8 rmsk exon 135872013 135872141 383 - . gene_id "ERV316A3_8q24.23a"; transcript_id "ERV316A3_8q24.23a"; locus "ERV316A3_8q24.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1657"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "36"; repStart "-279"; chr8 rmsk exon 135872292 135872956 1736 - . gene_id "ERV316A3_8q24.23a"; transcript_id "ERV316A3_8q24.23a"; locus "ERV316A3_8q24.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1657"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "4487"; repStart "-54"; ### ERVLB4_8q24.23 ### chr8 rmsk gene 135948198 135948809 . + . gene_id "ERVLB4_8q24.23"; transcript_id "ERVLB4_8q24.23"; locus "ERVLB4_8q24.23"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0988"; model_cov "595"; model_pct "10.4"; chr8 rmsk exon 135948198 135948809 764 + . gene_id "ERVLB4_8q24.23"; transcript_id "ERVLB4_8q24.23"; locus "ERVLB4_8q24.23"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0988"; repClass "LTR"; repEnd "3686"; repFamily "ERVL"; repLeft "-2028"; repStart "3091"; ### ERV316A3_8q24.23b ### chr8 rmsk gene 135975337 135976436 . - . gene_id "ERV316A3_8q24.23b"; transcript_id "ERV316A3_8q24.23b"; locus "ERV316A3_8q24.23b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1658"; model_cov "921"; model_pct "17.6"; chr8 rmsk exon 135975337 135975967 908 - . gene_id "ERV316A3_8q24.23b"; transcript_id "ERV316A3_8q24.23b"; locus "ERV316A3_8q24.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1658"; repClass "LTR"; repEnd "4245"; repFamily "ERVL"; repLeft "3587"; repStart "-981"; chr8 rmsk exon 135976181 135976436 643 - . gene_id "ERV316A3_8q24.23b"; transcript_id "ERV316A3_8q24.23b"; locus "ERV316A3_8q24.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1658"; repClass "LTR"; repEnd "2803"; repFamily "ERVL"; repLeft "2540"; repStart "-2423"; ### ERV316A3_8q24.23c ### chr8 rmsk gene 136115313 136118334 . - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1659"; model_cov "2716"; model_pct "52.0"; chr8 rmsk exon 136115313 136115667 581 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "4627"; repFamily "ERVL"; repLeft "4280"; repStart "-599"; chr8 rmsk exon 136115749 136116392 1160 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3033"; repStart "-1290"; chr8 rmsk exon 136116454 136117027 1160 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "2874"; repStart "-1766"; chr8 rmsk exon 136117042 136117648 1370 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "2113"; repStart "-2520"; chr8 rmsk exon 136117740 136118021 393 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "101"; repStart "-4838"; chr8 rmsk exon 136118158 136118334 285 - . gene_id "ERV316A3_8q24.23c"; transcript_id "ERV316A3_8q24.23c"; locus "ERV316A3_8q24.23c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1659"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "209"; repStart "-34"; ### ERV316A3_8q24.23d ### chr8 rmsk gene 136147227 136148953 . - . gene_id "ERV316A3_8q24.23d"; transcript_id "ERV316A3_8q24.23d"; locus "ERV316A3_8q24.23d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1660"; model_cov "1604"; model_pct "30.7"; chr8 rmsk exon 136147227 136147909 1753 - . gene_id "ERV316A3_8q24.23d"; transcript_id "ERV316A3_8q24.23d"; locus "ERV316A3_8q24.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1660"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "4468"; repStart "-93"; chr8 rmsk exon 136148027 136148953 2169 - . gene_id "ERV316A3_8q24.23d"; transcript_id "ERV316A3_8q24.23d"; locus "ERV316A3_8q24.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1660"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "3411"; repStart "-876"; ### ERV316A3_8q24.23e ### chr8 rmsk gene 136256209 136258492 . - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1661"; model_cov "1714"; model_pct "32.8"; chr8 rmsk exon 136256209 136256364 362 - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1661"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "282"; repStart "-4"; chr8 rmsk exon 136256377 136256580 468 - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1661"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "10"; repStart "-189"; chr8 rmsk exon 136256592 136257507 2371 - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1661"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4302"; repStart "0"; chr8 rmsk exon 136257574 136257727 1415 - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1661"; repClass "LTR"; repEnd "2909"; repFamily "ERVL"; repLeft "2736"; repStart "-2317"; chr8 rmsk exon 136257813 136258492 1491 - . gene_id "ERV316A3_8q24.23e"; transcript_id "ERV316A3_8q24.23e"; locus "ERV316A3_8q24.23e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1661"; repClass "LTR"; repEnd "2735"; repFamily "ERVL"; repLeft "2118"; repStart "-2491"; ### ERV316A3_8q24.23f ### chr8 rmsk gene 136258528 136259131 . - . gene_id "ERV316A3_8q24.23f"; transcript_id "ERV316A3_8q24.23f"; locus "ERV316A3_8q24.23f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1662"; model_cov "614"; model_pct "11.7"; chr8 rmsk exon 136258528 136259131 1491 - . gene_id "ERV316A3_8q24.23f"; transcript_id "ERV316A3_8q24.23f"; locus "ERV316A3_8q24.23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1662"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "2225"; repStart "-2387"; ### ERVLE_8q24.23b ### chr8 rmsk gene 136361671 136365431 . + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2200"; model_cov "3181"; model_pct "56.1"; chr8 rmsk exon 136361671 136361801 518 + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2200"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-5523"; repStart "12"; chr8 rmsk exon 136361877 136362298 1056 + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2200"; repClass "LTR"; repEnd "591"; repFamily "ERVL"; repLeft "-5076"; repStart "154"; chr8 rmsk exon 136362310 136362885 1684 + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2200"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "-4450"; repStart "612"; chr8 rmsk exon 136363554 136363900 1049 + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2200"; repClass "LTR"; repEnd "1636"; repFamily "ERVL"; repLeft "-4031"; repStart "1281"; chr8 rmsk exon 136363891 136365431 3056 + . gene_id "ERVLE_8q24.23b"; transcript_id "ERVLE_8q24.23b"; locus "ERVLE_8q24.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2200"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "-306"; repStart "3709"; ### ERVLE_8q24.23c ### chr8 rmsk gene 136382194 136386405 . + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2201"; model_cov "3888"; model_pct "68.6"; chr8 rmsk exon 136382194 136382358 404 + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2201"; repClass "LTR"; repEnd "1052"; repFamily "ERVL"; repLeft "-4615"; repStart "888"; chr8 rmsk exon 136382372 136382576 778 + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2201"; repClass "LTR"; repEnd "1320"; repFamily "ERVL"; repLeft "-4347"; repStart "1115"; chr8 rmsk exon 136382994 136383163 778 + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2201"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "-4170"; repStart "1321"; chr8 rmsk exon 136383181 136385312 3461 + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2201"; repClass "LTR"; repEnd "3791"; repFamily "ERVL"; repLeft "-1876"; repStart "1542"; chr8 rmsk exon 136385323 136386405 3030 + . gene_id "ERVLE_8q24.23c"; transcript_id "ERVLE_8q24.23c"; locus "ERVLE_8q24.23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2201"; repClass "LTR"; repEnd "5331"; repFamily "ERVL"; repLeft "-336"; repStart "4237"; ### HERVL_8q24.23 ### chr8 rmsk gene 136522024 136524241 . - . gene_id "HERVL_8q24.23"; transcript_id "HERVL_8q24.23"; locus "HERVL_8q24.23"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0782"; model_cov "1514"; model_pct "26.8"; chr8 rmsk exon 136522024 136522926 6917 - . gene_id "HERVL_8q24.23"; transcript_id "HERVL_8q24.23"; locus "HERVL_8q24.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0782"; repClass "LTR"; repEnd "1508"; repFamily "ERVL"; repLeft "599"; repStart "-4146"; chr8 rmsk exon 136523058 136523662 4482 - . gene_id "HERVL_8q24.23"; transcript_id "HERVL_8q24.23"; locus "HERVL_8q24.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0782"; repClass "LTR"; repEnd "606"; repFamily "ERVL"; repLeft "1"; repStart "-5048"; chr8 rmsk exon 136523663 136523740 356 - . gene_id "HERVL_8q24.23"; transcript_id "HERVL_8q24.23"; locus "HERVL_8q24.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0782"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr8 rmsk exon 136523856 136524241 2765 - . gene_id "HERVL_8q24.23"; transcript_id "HERVL_8q24.23"; locus "HERVL_8q24.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0782"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-51"; ### ERVLE_8q24.23d ### chr8 rmsk gene 136530002 136532437 . - . gene_id "ERVLE_8q24.23d"; transcript_id "ERVLE_8q24.23d"; locus "ERVLE_8q24.23d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2202"; model_cov "1224"; model_pct "21.6"; chr8 rmsk exon 136530002 136530211 644 - . gene_id "ERVLE_8q24.23d"; transcript_id "ERVLE_8q24.23d"; locus "ERVLE_8q24.23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2202"; repClass "LTR"; repEnd "4228"; repFamily "ERVL"; repLeft "4015"; repStart "-1439"; chr8 rmsk exon 136530976 136531272 443 - . gene_id "ERVLE_8q24.23d"; transcript_id "ERVLE_8q24.23d"; locus "ERVLE_8q24.23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2202"; repClass "LTR"; repEnd "3603"; repFamily "ERVL"; repLeft "3304"; repStart "-2064"; chr8 rmsk exon 136531749 136532437 1028 - . gene_id "ERVLE_8q24.23d"; transcript_id "ERVLE_8q24.23d"; locus "ERVLE_8q24.23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2202"; repClass "LTR"; repEnd "2771"; repFamily "ERVL"; repLeft "2059"; repStart "-2896"; ### ERV316A3_8q24.23g ### chr8 rmsk gene 136614064 136615514 . - . gene_id "ERV316A3_8q24.23g"; transcript_id "ERV316A3_8q24.23g"; locus "ERV316A3_8q24.23g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1663"; model_cov "1467"; model_pct "28.1"; chr8 rmsk exon 136614064 136615514 3990 - . gene_id "ERV316A3_8q24.23g"; transcript_id "ERV316A3_8q24.23g"; locus "ERV316A3_8q24.23g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1663"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "3704"; repStart "-55"; ### ERV316A3_8q24.23h ### chr8 rmsk gene 136631814 136633858 . - . gene_id "ERV316A3_8q24.23h"; transcript_id "ERV316A3_8q24.23h"; locus "ERV316A3_8q24.23h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1664"; model_cov "1098"; model_pct "21.0"; chr8 rmsk exon 136631814 136631955 406 - . gene_id "ERV316A3_8q24.23h"; transcript_id "ERV316A3_8q24.23h"; locus "ERV316A3_8q24.23h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1664"; repClass "LTR"; repEnd "4175"; repFamily "ERVL"; repLeft "4030"; repStart "-1051"; chr8 rmsk exon 136632614 136633028 962 - . gene_id "ERV316A3_8q24.23h"; transcript_id "ERV316A3_8q24.23h"; locus "ERV316A3_8q24.23h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1664"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "3179"; repStart "-1416"; chr8 rmsk exon 136633565 136633858 962 - . gene_id "ERV316A3_8q24.23h"; transcript_id "ERV316A3_8q24.23h"; locus "ERV316A3_8q24.23h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1664"; repClass "LTR"; repEnd "3367"; repFamily "ERVL"; repLeft "3045"; repStart "-1859"; ### ERV316A3_8q24.23i ### chr8 rmsk gene 136665105 136666044 . - . gene_id "ERV316A3_8q24.23i"; transcript_id "ERV316A3_8q24.23i"; locus "ERV316A3_8q24.23i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1665"; model_cov "1124"; model_pct "21.5"; chr8 rmsk exon 136665105 136666044 2339 - . gene_id "ERV316A3_8q24.23i"; transcript_id "ERV316A3_8q24.23i"; locus "ERV316A3_8q24.23i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1665"; repClass "LTR"; repEnd "2902"; repFamily "ERVL"; repLeft "1778"; repStart "-2324"; ### HML3_8q24.23 ### chr8 rmsk gene 136907873 136912851 . - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0145"; model_cov "3958"; model_pct "65.7"; chr8 rmsk exon 136907873 136908424 3940 - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0145"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 136908425 136910185 14051 - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0145"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4258"; repStart "0"; chr8 rmsk exon 136910179 136911751 12663 - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0145"; repClass "LTR"; repEnd "2872"; repFamily "ERVK"; repLeft "1280"; repStart "-3149"; chr8 rmsk exon 136911752 136912338 4516 - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0145"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr8 rmsk exon 136912339 136912851 4162 - . gene_id "HML3_8q24.23"; transcript_id "HML3_8q24.23"; locus "HML3_8q24.23"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0145"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_8q24.23 ### chr8 rmsk gene 136912852 136916210 . - . gene_id "MER41_8q24.23"; transcript_id "MER41_8q24.23"; locus "MER41_8q24.23"; category "internal"; intModel "MER41-int"; locid "MER41-int_0310"; model_cov "5515"; model_pct "92.8"; chr8 rmsk exon 136912852 136916072 11741 - . gene_id "MER41_8q24.23"; transcript_id "MER41_8q24.23"; locus "MER41_8q24.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0310"; repClass "LTR"; repEnd "5202"; repFamily "ERV1"; repLeft "-175"; repStart "-744"; chr8 rmsk exon 136916059 136916210 824 - . gene_id "MER41_8q24.23"; transcript_id "MER41_8q24.23"; locus "MER41_8q24.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0310"; repClass "LTR"; repEnd "1128"; repFamily "ERV1"; repLeft "990"; repStart "-4818"; ### ERVLE_8q24.23e ### chr8 rmsk gene 137051963 137055981 . + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2203"; model_cov "1785"; model_pct "31.5"; chr8 rmsk exon 137051963 137052231 707 + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2203"; repClass "LTR"; repEnd "2136"; repFamily "ERVL"; repLeft "-3531"; repStart "1839"; chr8 rmsk exon 137052219 137052347 361 + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2203"; repClass "LTR"; repEnd "2445"; repFamily "ERVL"; repLeft "-3222"; repStart "2315"; chr8 rmsk exon 137052664 137053127 512 + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2203"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "-2662"; repStart "2530"; chr8 rmsk exon 137054093 137054231 512 + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2203"; repClass "LTR"; repEnd "3142"; repFamily "ERVL"; repLeft "-2525"; repStart "3014"; chr8 rmsk exon 137055395 137055981 948 + . gene_id "ERVLE_8q24.23e"; transcript_id "ERVLE_8q24.23e"; locus "ERVLE_8q24.23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2203"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "-874"; repStart "4038"; ### HERVH48_8q24.23 ### chr8 rmsk gene 137281320 137287809 . + . gene_id "HERVH48_8q24.23"; transcript_id "HERVH48_8q24.23"; locus "HERVH48_8q24.23"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0033"; model_cov "5824"; model_pct "87.5"; chr8 rmsk exon 137281320 137281697 2754 + . gene_id "HERVH48_8q24.23"; transcript_id "HERVH48_8q24.23"; locus "HERVH48_8q24.23"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0033"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "5"; chr8 rmsk exon 137281698 137287233 34501 + . gene_id "HERVH48_8q24.23"; transcript_id "HERVH48_8q24.23"; locus "HERVH48_8q24.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0033"; repClass "LTR"; repEnd "5650"; repFamily "ERV1"; repLeft "-1004"; repStart "1"; chr8 rmsk exon 137287237 137287415 1295 + . gene_id "HERVH48_8q24.23"; transcript_id "HERVH48_8q24.23"; locus "HERVH48_8q24.23"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0033"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "-7"; repStart "6472"; chr8 rmsk exon 137287420 137287809 2727 + . gene_id "HERVH48_8q24.23"; transcript_id "HERVH48_8q24.23"; locus "HERVH48_8q24.23"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0033"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_8q24.23j ### chr8 rmsk gene 137355647 137357497 . + . gene_id "ERV316A3_8q24.23j"; transcript_id "ERV316A3_8q24.23j"; locus "ERV316A3_8q24.23j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1666"; model_cov "1425"; model_pct "27.3"; chr8 rmsk exon 137355647 137356057 862 + . gene_id "ERV316A3_8q24.23j"; transcript_id "ERV316A3_8q24.23j"; locus "ERV316A3_8q24.23j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1666"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr8 rmsk exon 137356082 137356680 926 + . gene_id "ERV316A3_8q24.23j"; transcript_id "ERV316A3_8q24.23j"; locus "ERV316A3_8q24.23j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1666"; repClass "LTR"; repEnd "848"; repFamily "ERVL"; repLeft "-4378"; repStart "242"; chr8 rmsk exon 137356719 137357497 1627 + . gene_id "ERV316A3_8q24.23j"; transcript_id "ERV316A3_8q24.23j"; locus "ERV316A3_8q24.23j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1666"; repClass "LTR"; repEnd "1735"; repFamily "ERVL"; repLeft "-3491"; repStart "916"; ### ERV316A3_8q24.23k ### chr8 rmsk gene 137357786 137361566 . + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1667"; model_cov "2212"; model_pct "42.3"; chr8 rmsk exon 137357786 137358119 1627 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "1433"; repFamily "ERVL"; repLeft "-3793"; repStart "982"; chr8 rmsk exon 137358092 137358180 260 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "1946"; repFamily "ERVL"; repLeft "-3280"; repStart "1857"; chr8 rmsk exon 137358836 137359629 1658 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "3046"; repFamily "ERVL"; repLeft "-2180"; repStart "2231"; chr8 rmsk exon 137360093 137360661 937 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "-431"; repStart "3938"; chr8 rmsk exon 137360814 137360849 632 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "32"; repFamily "ERVL"; repLeft "-406"; repStart "1"; chr8 rmsk exon 137361169 137361566 632 + . gene_id "ERV316A3_8q24.23k"; transcript_id "ERV316A3_8q24.23k"; locus "ERV316A3_8q24.23k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1667"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "33"; ### HERVH_8q24.23b ### chr8 rmsk gene 137409417 137413888 . - . gene_id "HERVH_8q24.23b"; transcript_id "HERVH_8q24.23b"; locus "HERVH_8q24.23b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0733"; model_cov "4333"; model_pct "56.2"; chr8 rmsk exon 137409417 137409759 2469 - . gene_id "HERVH_8q24.23b"; transcript_id "HERVH_8q24.23b"; locus "HERVH_8q24.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0733"; repClass "LTR"; repEnd "4829"; repFamily "ERV1"; repLeft "4488"; repStart "-2884"; chr8 rmsk exon 137409762 137413481 15887 - . gene_id "HERVH_8q24.23b"; transcript_id "HERVH_8q24.23b"; locus "HERVH_8q24.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0733"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr8 rmsk exon 137413484 137413888 2470 - . gene_id "HERVH_8q24.23b"; transcript_id "HERVH_8q24.23b"; locus "HERVH_8q24.23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0733"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HERVH_8q24.23c ### chr8 rmsk gene 137824642 137830517 . - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0734"; model_cov "5260"; model_pct "68.2"; chr8 rmsk exon 137824642 137825042 2555 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 137825043 137825421 2264 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr8 rmsk exon 137825422 137825637 1322 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 137825639 137826299 4212 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr8 rmsk exon 137826303 137830164 24054 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr8 rmsk exon 137830173 137830517 1734 - . gene_id "HERVH_8q24.23c"; transcript_id "HERVH_8q24.23c"; locus "HERVH_8q24.23c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0734"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; ### HERV30_8q24.23 ### chr8 rmsk gene 137989057 137992203 . + . gene_id "HERV30_8q24.23"; transcript_id "HERV30_8q24.23"; locus "HERV30_8q24.23"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0014"; model_cov "2445"; model_pct "29.6"; chr8 rmsk exon 137989057 137989768 4755 + . gene_id "HERV30_8q24.23"; transcript_id "HERV30_8q24.23"; locus "HERV30_8q24.23"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0014"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr8 rmsk exon 137989771 137992203 17865 + . gene_id "HERV30_8q24.23"; transcript_id "HERV30_8q24.23"; locus "HERV30_8q24.23"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0014"; repClass "LTR"; repEnd "2448"; repFamily "ERV1"; repLeft "-5809"; repStart "3"; ### ERVL_8q24.3 ### chr8 rmsk gene 138994354 138996020 . - . gene_id "ERVL_8q24.3"; transcript_id "ERVL_8q24.3"; locus "ERVL_8q24.3"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0259"; model_cov "1089"; model_pct "18.9"; chr8 rmsk exon 138994354 138994403 319 - . gene_id "ERVL_8q24.3"; transcript_id "ERVL_8q24.3"; locus "ERVL_8q24.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0259"; repClass "LTR"; repEnd "52"; repFamily "ERVL"; repLeft "3"; repStart "-504"; chr8 rmsk exon 138994407 138994688 3996 - . gene_id "ERVL_8q24.3"; transcript_id "ERVL_8q24.3"; locus "ERVL_8q24.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0259"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "5466"; repStart "-1"; chr8 rmsk exon 138994736 138995490 4556 - . gene_id "ERVL_8q24.3"; transcript_id "ERVL_8q24.3"; locus "ERVL_8q24.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0259"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "4598"; repStart "-360"; chr8 rmsk exon 138995536 138996020 2797 - . gene_id "ERVL_8q24.3"; transcript_id "ERVL_8q24.3"; locus "ERVL_8q24.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0259"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "4"; repStart "-42"; ### ERVLE_8q24.3a ### chr8 rmsk gene 139073996 139078985 . - . gene_id "ERVLE_8q24.3a"; transcript_id "ERVLE_8q24.3a"; locus "ERVLE_8q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2207"; model_cov "1926"; model_pct "34.0"; chr8 rmsk exon 139073996 139074563 785 - . gene_id "ERVLE_8q24.3a"; transcript_id "ERVLE_8q24.3a"; locus "ERVLE_8q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2207"; repClass "LTR"; repEnd "5234"; repFamily "ERVL"; repLeft "4658"; repStart "-433"; chr8 rmsk exon 139076801 139077173 614 - . gene_id "ERVLE_8q24.3a"; transcript_id "ERVLE_8q24.3a"; locus "ERVLE_8q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2207"; repClass "LTR"; repEnd "4635"; repFamily "ERVL"; repLeft "4255"; repStart "-1032"; chr8 rmsk exon 139077430 139077684 609 - . gene_id "ERVLE_8q24.3a"; transcript_id "ERVLE_8q24.3a"; locus "ERVLE_8q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2207"; repClass "LTR"; repEnd "4121"; repFamily "ERVL"; repLeft "3860"; repStart "-1546"; chr8 rmsk exon 139078297 139078985 1288 - . gene_id "ERVLE_8q24.3a"; transcript_id "ERVLE_8q24.3a"; locus "ERVLE_8q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2207"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "2631"; repStart "-2327"; ### ERVLB4_8q24.3a ### chr8 rmsk gene 139124441 139129844 . - . gene_id "ERVLB4_8q24.3a"; transcript_id "ERVLB4_8q24.3a"; locus "ERVLB4_8q24.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0992"; model_cov "5651"; model_pct "98.9"; chr8 rmsk exon 139124441 139129844 23886 - . gene_id "ERVLB4_8q24.3a"; transcript_id "ERVLB4_8q24.3a"; locus "ERVLB4_8q24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0992"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "63"; repStart "0"; ### ERV316A3_8q24.3a ### chr8 rmsk gene 139188905 139190614 . - . gene_id "ERV316A3_8q24.3a"; transcript_id "ERV316A3_8q24.3a"; locus "ERV316A3_8q24.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1669"; model_cov "1332"; model_pct "25.5"; chr8 rmsk exon 139188905 139189296 1012 - . gene_id "ERV316A3_8q24.3a"; transcript_id "ERV316A3_8q24.3a"; locus "ERV316A3_8q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1669"; repClass "LTR"; repEnd "4580"; repFamily "ERVL"; repLeft "3978"; repStart "-646"; chr8 rmsk exon 139189449 139189988 1218 - . gene_id "ERV316A3_8q24.3a"; transcript_id "ERV316A3_8q24.3a"; locus "ERV316A3_8q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1669"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "3774"; repStart "-873"; chr8 rmsk exon 139190469 139190614 285 - . gene_id "ERV316A3_8q24.3a"; transcript_id "ERV316A3_8q24.3a"; locus "ERV316A3_8q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1669"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "3231"; repStart "-1844"; ### MER101_8q24.3a ### chr8 rmsk gene 139231692 139235895 . + . gene_id "MER101_8q24.3a"; transcript_id "MER101_8q24.3a"; locus "MER101_8q24.3a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0237"; model_cov "2545"; model_pct "38.3"; chr8 rmsk exon 139231692 139231901 1601 + . gene_id "MER101_8q24.3a"; transcript_id "MER101_8q24.3a"; locus "MER101_8q24.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0237"; repClass "LTR"; repEnd "2547"; repFamily "ERV1"; repLeft "-4092"; repStart "2339"; chr8 rmsk exon 139232200 139232431 1601 + . gene_id "MER101_8q24.3a"; transcript_id "MER101_8q24.3a"; locus "MER101_8q24.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0237"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-3874"; repStart "2548"; chr8 rmsk exon 139232554 139235476 4623 + . gene_id "MER101_8q24.3a"; transcript_id "MER101_8q24.3a"; locus "MER101_8q24.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0237"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "4519"; chr8 rmsk exon 139235478 139235895 1950 + . gene_id "MER101_8q24.3a"; transcript_id "MER101_8q24.3a"; locus "MER101_8q24.3a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0237"; repClass "LTR"; repEnd "417"; repFamily "ERV1"; repLeft "-28"; repStart "2"; ### ERV316A3_8q24.3b ### chr8 rmsk gene 139314647 139316830 . + . gene_id "ERV316A3_8q24.3b"; transcript_id "ERV316A3_8q24.3b"; locus "ERV316A3_8q24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1670"; model_cov "1998"; model_pct "38.2"; chr8 rmsk exon 139314647 139314900 665 + . gene_id "ERV316A3_8q24.3b"; transcript_id "ERV316A3_8q24.3b"; locus "ERV316A3_8q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1670"; repClass "LTR"; repEnd "1398"; repFamily "ERVL"; repLeft "-3828"; repStart "1140"; chr8 rmsk exon 139315389 139316830 1285 + . gene_id "ERV316A3_8q24.3b"; transcript_id "ERV316A3_8q24.3b"; locus "ERV316A3_8q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1670"; repClass "LTR"; repEnd "3182"; repFamily "ERVL"; repLeft "-2044"; repStart "1442"; ### ERV316A3_8q24.3c ### chr8 rmsk gene 139334907 139336168 . + . gene_id "ERV316A3_8q24.3c"; transcript_id "ERV316A3_8q24.3c"; locus "ERV316A3_8q24.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1671"; model_cov "554"; model_pct "10.6"; chr8 rmsk exon 139334907 139335453 1939 + . gene_id "ERV316A3_8q24.3c"; transcript_id "ERV316A3_8q24.3c"; locus "ERV316A3_8q24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1671"; repClass "LTR"; repEnd "3055"; repFamily "ERVL"; repLeft "-2171"; repStart "2501"; chr8 rmsk exon 139335869 139336168 763 + . gene_id "ERV316A3_8q24.3c"; transcript_id "ERV316A3_8q24.3c"; locus "ERV316A3_8q24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1671"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "126"; ### ERV316A3_8q24.3d ### chr8 rmsk gene 139375648 139376424 . - . gene_id "ERV316A3_8q24.3d"; transcript_id "ERV316A3_8q24.3d"; locus "ERV316A3_8q24.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1672"; model_cov "805"; model_pct "15.4"; chr8 rmsk exon 139375648 139376424 1430 - . gene_id "ERV316A3_8q24.3d"; transcript_id "ERV316A3_8q24.3d"; locus "ERV316A3_8q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1672"; repClass "LTR"; repEnd "4887"; repFamily "ERVL"; repLeft "4082"; repStart "-339"; ### ERVLE_8q24.3b ### chr8 rmsk gene 139418840 139423026 . + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2210"; model_cov "3012"; model_pct "53.1"; chr8 rmsk exon 139418840 139418955 538 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "-2767"; repStart "2787"; chr8 rmsk exon 139419639 139420696 4498 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "3962"; repFamily "ERVL"; repLeft "-1705"; repStart "2897"; chr8 rmsk exon 139421076 139421274 1074 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "4174"; repFamily "ERVL"; repLeft "-1493"; repStart "3952"; chr8 rmsk exon 139421597 139422451 1961 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-525"; repStart "4111"; chr8 rmsk exon 139422442 139422493 297 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "3960"; repFamily "ERVL"; repLeft "-1707"; repStart "3909"; chr8 rmsk exon 139422489 139423026 2198 + . gene_id "ERVLE_8q24.3b"; transcript_id "ERVLE_8q24.3b"; locus "ERVLE_8q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2210"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5137"; ### HML2_8q24.3a ### chr8 rmsk gene 139459906 139462993 . - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0075"; model_cov "2025"; model_pct "26.9"; chr8 rmsk exon 139459906 139460873 8925 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 139460969 139461717 6940 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6693"; repStart "-95"; chr8 rmsk exon 139461716 139462993 11668 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "1278"; repFamily "ERVK"; repLeft "1"; repStart "-6258"; ### ERVLE_8q24.3c ### chr8 rmsk gene 139470314 139471638 . + . gene_id "ERVLE_8q24.3c"; transcript_id "ERVLE_8q24.3c"; locus "ERVLE_8q24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2211"; model_cov "1372"; model_pct "24.2"; chr8 rmsk exon 139470314 139471638 2739 + . gene_id "ERVLE_8q24.3c"; transcript_id "ERVLE_8q24.3c"; locus "ERVLE_8q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2211"; repClass "LTR"; repEnd "5291"; repFamily "ERVL"; repLeft "-376"; repStart "3919"; ### ERVLE_8q24.3d ### chr8 rmsk gene 139537075 139537738 . - . gene_id "ERVLE_8q24.3d"; transcript_id "ERVLE_8q24.3d"; locus "ERVLE_8q24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2214"; model_cov "687"; model_pct "12.1"; chr8 rmsk exon 139537075 139537425 317 - . gene_id "ERVLE_8q24.3d"; transcript_id "ERVLE_8q24.3d"; locus "ERVLE_8q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2214"; repClass "LTR"; repEnd "3547"; repFamily "ERVL"; repLeft "3191"; repStart "-2120"; chr8 rmsk exon 139537439 139537738 461 - . gene_id "ERVLE_8q24.3d"; transcript_id "ERVLE_8q24.3d"; locus "ERVLE_8q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2214"; repClass "LTR"; repEnd "3147"; repFamily "ERVL"; repLeft "2816"; repStart "-2520"; ### ERV316A3_8q24.3e ### chr8 rmsk gene 139544312 139545977 . + . gene_id "ERV316A3_8q24.3e"; transcript_id "ERV316A3_8q24.3e"; locus "ERV316A3_8q24.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1673"; model_cov "1696"; model_pct "32.5"; chr8 rmsk exon 139544312 139545977 3052 + . gene_id "ERV316A3_8q24.3e"; transcript_id "ERV316A3_8q24.3e"; locus "ERV316A3_8q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1673"; repClass "LTR"; repEnd "2598"; repFamily "ERVL"; repLeft "-2628"; repStart "902"; ### HERVE_8q24.3a ### chr8 rmsk gene 139546318 139550370 . - . gene_id "HERVE_8q24.3a"; transcript_id "HERVE_8q24.3a"; locus "HERVE_8q24.3a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0090"; model_cov "3663"; model_pct "46.9"; chr8 rmsk exon 139546318 139546393 261 - . gene_id "HERVE_8q24.3a"; transcript_id "HERVE_8q24.3a"; locus "HERVE_8q24.3a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0090"; repClass "LTR"; repEnd "153"; repFamily "ERV1"; repLeft "80"; repStart "-348"; chr8 rmsk exon 139546778 139550370 20017 - . gene_id "HERVE_8q24.3a"; transcript_id "HERVE_8q24.3a"; locus "HERVE_8q24.3a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0090"; repClass "LTR"; repEnd "5681"; repFamily "ERV1"; repLeft "2018"; repStart "-2132"; ### ERV316A3_8q24.3f ### chr8 rmsk gene 139550422 139551842 . + . gene_id "ERV316A3_8q24.3f"; transcript_id "ERV316A3_8q24.3f"; locus "ERV316A3_8q24.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1674"; model_cov "1154"; model_pct "22.1"; chr8 rmsk exon 139550422 139550752 1055 + . gene_id "ERV316A3_8q24.3f"; transcript_id "ERV316A3_8q24.3f"; locus "ERV316A3_8q24.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1674"; repClass "LTR"; repEnd "3078"; repFamily "ERVL"; repLeft "-2148"; repStart "2734"; chr8 rmsk exon 139550944 139551419 1258 + . gene_id "ERV316A3_8q24.3f"; transcript_id "ERV316A3_8q24.3f"; locus "ERV316A3_8q24.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1674"; repClass "LTR"; repEnd "4604"; repFamily "ERVL"; repLeft "-622"; repStart "4035"; chr8 rmsk exon 139551613 139551842 771 + . gene_id "ERV316A3_8q24.3f"; transcript_id "ERV316A3_8q24.3f"; locus "ERV316A3_8q24.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1674"; repClass "LTR"; repEnd "5113"; repFamily "ERVL"; repLeft "-113"; repStart "4872"; ### ERV316A3_8q24.3g ### chr8 rmsk gene 139554094 139555635 . - . gene_id "ERV316A3_8q24.3g"; transcript_id "ERV316A3_8q24.3g"; locus "ERV316A3_8q24.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1675"; model_cov "1105"; model_pct "21.1"; chr8 rmsk exon 139554094 139554335 895 - . gene_id "ERV316A3_8q24.3g"; transcript_id "ERV316A3_8q24.3g"; locus "ERV316A3_8q24.3g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1675"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "1"; repStart "-166"; chr8 rmsk exon 139554576 139555635 1835 - . gene_id "ERV316A3_8q24.3g"; transcript_id "ERV316A3_8q24.3g"; locus "ERV316A3_8q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1675"; repClass "LTR"; repEnd "4967"; repFamily "ERVL"; repLeft "3862"; repStart "-259"; ### ERV316A3_8q24.3h ### chr8 rmsk gene 139572151 139573202 . - . gene_id "ERV316A3_8q24.3h"; transcript_id "ERV316A3_8q24.3h"; locus "ERV316A3_8q24.3h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1676"; model_cov "679"; model_pct "13.0"; chr8 rmsk exon 139572151 139572555 1039 - . gene_id "ERV316A3_8q24.3h"; transcript_id "ERV316A3_8q24.3h"; locus "ERV316A3_8q24.3h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1676"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "1"; repStart "-20"; chr8 rmsk exon 139572556 139573202 1682 - . gene_id "ERV316A3_8q24.3h"; transcript_id "ERV316A3_8q24.3h"; locus "ERV316A3_8q24.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1676"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4547"; repStart "0"; ### ERVLE_8q24.3e ### chr8 rmsk gene 139621772 139622298 . + . gene_id "ERVLE_8q24.3e"; transcript_id "ERVLE_8q24.3e"; locus "ERVLE_8q24.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2216"; model_cov "593"; model_pct "10.5"; chr8 rmsk exon 139621772 139622298 566 + . gene_id "ERVLE_8q24.3e"; transcript_id "ERVLE_8q24.3e"; locus "ERVLE_8q24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2216"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "-2810"; repStart "2264"; ### MER4_8q24.3a ### chr8 rmsk gene 140315253 140316426 . + . gene_id "MER4_8q24.3a"; transcript_id "MER4_8q24.3a"; locus "MER4_8q24.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0439"; model_cov "1255"; model_pct "19.0"; chr8 rmsk exon 140315253 140316426 7323 + . gene_id "MER4_8q24.3a"; transcript_id "MER4_8q24.3a"; locus "MER4_8q24.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0439"; repClass "LTR"; repEnd "5470"; repFamily "ERV1"; repLeft "-1128"; repStart "4215"; ### ERVLE_8q24.3f ### chr8 rmsk gene 140501924 140503274 . + . gene_id "ERVLE_8q24.3f"; transcript_id "ERVLE_8q24.3f"; locus "ERVLE_8q24.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2217"; model_cov "711"; model_pct "12.5"; chr8 rmsk exon 140501924 140502083 715 + . gene_id "ERVLE_8q24.3f"; transcript_id "ERVLE_8q24.3f"; locus "ERVLE_8q24.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2217"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "-2509"; repStart "2905"; chr8 rmsk exon 140502405 140502546 715 + . gene_id "ERVLE_8q24.3f"; transcript_id "ERVLE_8q24.3f"; locus "ERVLE_8q24.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2217"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-2372"; repStart "3159"; chr8 rmsk exon 140502947 140503274 873 + . gene_id "ERVLE_8q24.3f"; transcript_id "ERVLE_8q24.3f"; locus "ERVLE_8q24.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2217"; repClass "LTR"; repEnd "4066"; repFamily "ERVL"; repLeft "-1601"; repStart "3744"; ### ERV316A3_8q24.3i ### chr8 rmsk gene 142089081 142090451 . + . gene_id "ERV316A3_8q24.3i"; transcript_id "ERV316A3_8q24.3i"; locus "ERV316A3_8q24.3i"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1677"; model_cov "1559"; model_pct "29.8"; chr8 rmsk exon 142089081 142089435 317 + . gene_id "ERV316A3_8q24.3i"; transcript_id "ERV316A3_8q24.3i"; locus "ERV316A3_8q24.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1677"; repClass "LTR"; repEnd "3669"; repFamily "ERVL"; repLeft "-1557"; repStart "3199"; chr8 rmsk exon 142089421 142090451 1438 + . gene_id "ERV316A3_8q24.3i"; transcript_id "ERV316A3_8q24.3i"; locus "ERV316A3_8q24.3i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1677"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "-176"; repStart "3961"; ### MER4_8q24.3b ### chr8 rmsk gene 142642024 142646192 . - . gene_id "MER4_8q24.3b"; transcript_id "MER4_8q24.3b"; locus "MER4_8q24.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0440"; model_cov "4780"; model_pct "72.4"; chr8 rmsk exon 142642024 142642472 3567 - . gene_id "MER4_8q24.3b"; transcript_id "MER4_8q24.3b"; locus "MER4_8q24.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0440"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 142642481 142643160 13759 - . gene_id "MER4_8q24.3b"; transcript_id "MER4_8q24.3b"; locus "MER4_8q24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0440"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5888"; repStart "-2"; chr8 rmsk exon 142643451 142645397 13759 - . gene_id "MER4_8q24.3b"; transcript_id "MER4_8q24.3b"; locus "MER4_8q24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0440"; repClass "LTR"; repEnd "5887"; repFamily "ERV1"; repLeft "2416"; repStart "-711"; chr8 rmsk exon 142645692 142646192 9873 - . gene_id "MER4_8q24.3b"; transcript_id "MER4_8q24.3b"; locus "MER4_8q24.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0440"; repClass "LTR"; repEnd "3998"; repFamily "ERV1"; repLeft "3397"; repStart "-2600"; ### MER4_8q24.3c ### chr8 rmsk gene 142646410 142647273 . - . gene_id "MER4_8q24.3c"; transcript_id "MER4_8q24.3c"; locus "MER4_8q24.3c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0441"; model_cov "1040"; model_pct "15.8"; chr8 rmsk exon 142646410 142647273 9873 - . gene_id "MER4_8q24.3c"; transcript_id "MER4_8q24.3c"; locus "MER4_8q24.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0441"; repClass "LTR"; repEnd "3998"; repFamily "ERV1"; repLeft "2958"; repStart "-2600"; ### MER4_8q24.3d ### chr8 rmsk gene 142650773 142652750 . - . gene_id "MER4_8q24.3d"; transcript_id "MER4_8q24.3d"; locus "MER4_8q24.3d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0442"; model_cov "1588"; model_pct "24.1"; chr8 rmsk exon 142650773 142652222 3448 - . gene_id "MER4_8q24.3d"; transcript_id "MER4_8q24.3d"; locus "MER4_8q24.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0442"; repClass "LTR"; repEnd "1589"; repFamily "ERV1"; repLeft "1"; repStart "-5009"; chr8 rmsk exon 142652226 142652750 2902 - . gene_id "MER4_8q24.3d"; transcript_id "MER4_8q24.3d"; locus "MER4_8q24.3d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0442"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_8q24.3 ### chr8 rmsk gene 142685011 142690795 . - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0090"; model_cov "3958"; model_pct "78.9"; chr8 rmsk exon 142685011 142685203 970 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "4777"; repFamily "ERV1"; repLeft "4585"; repStart "-238"; chr8 rmsk exon 142685506 142685912 852 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "4256"; repStart "-353"; chr8 rmsk exon 142686488 142686582 493 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "3167"; repFamily "ERV1"; repLeft "3076"; repStart "-1848"; chr8 rmsk exon 142686582 142687123 3725 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "2932"; repFamily "ERV1"; repLeft "2370"; repStart "-2083"; chr8 rmsk exon 142687416 142687531 3725 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "2369"; repFamily "ERV1"; repLeft "2254"; repStart "-2646"; chr8 rmsk exon 142687531 142688344 3505 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "2098"; repFamily "ERV1"; repLeft "1154"; repStart "-2917"; chr8 rmsk exon 142688574 142690795 5494 - . gene_id "PABLA_8q24.3"; transcript_id "PABLA_8q24.3"; locus "PABLA_8q24.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0090"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1"; repStart "-3366"; ### MER4_8q24.3e ### chr8 rmsk gene 142690798 142693659 . - . gene_id "MER4_8q24.3e"; transcript_id "MER4_8q24.3e"; locus "MER4_8q24.3e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0443"; model_cov "1345"; model_pct "20.4"; chr8 rmsk exon 142690798 142691228 2751 - . gene_id "MER4_8q24.3e"; transcript_id "MER4_8q24.3e"; locus "MER4_8q24.3e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0443"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 142691677 142692677 2321 - . gene_id "MER4_8q24.3e"; transcript_id "MER4_8q24.3e"; locus "MER4_8q24.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0443"; repClass "LTR"; repEnd "4025"; repFamily "ERV1"; repLeft "3075"; repStart "-2573"; chr8 rmsk exon 142692730 142692987 1419 - . gene_id "MER4_8q24.3e"; transcript_id "MER4_8q24.3e"; locus "MER4_8q24.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0443"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "207"; repStart "-6138"; chr8 rmsk exon 142693519 142693659 828 - . gene_id "MER4_8q24.3e"; transcript_id "MER4_8q24.3e"; locus "MER4_8q24.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0443"; repClass "LTR"; repEnd "126"; repFamily "ERV1"; repLeft "-16"; repStart "-6472"; ### PABLB_8q24.3a ### chr8 rmsk gene 142721471 142723200 . + . gene_id "PABLB_8q24.3a"; transcript_id "PABLB_8q24.3a"; locus "PABLB_8q24.3a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0059"; model_cov "3032"; model_pct "42.6"; chr8 rmsk exon 142721471 142723200 1310 + . gene_id "PABLB_8q24.3a"; transcript_id "PABLB_8q24.3a"; locus "PABLB_8q24.3a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0059"; repClass "LTR"; repEnd "4046"; repFamily "ERV1"; repLeft "-3076"; repStart "1014"; ### HERVIP10FH_8q24.3 ### chr8 rmsk gene 142730633 142733469 . - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0099"; model_cov "1443"; model_pct "28.3"; chr8 rmsk exon 142730633 142730744 3299 - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0099"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "2545"; repStart "-2449"; chr8 rmsk exon 142731045 142731563 3299 - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0099"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "2042"; repStart "-2558"; chr8 rmsk exon 142731965 142732161 1548 - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0099"; repClass "LTR"; repEnd "857"; repFamily "ERV1"; repLeft "662"; repStart "-4245"; chr8 rmsk exon 142732208 142732864 1548 - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0099"; repClass "LTR"; repEnd "661"; repFamily "ERV1"; repLeft "23"; repStart "-4441"; chr8 rmsk exon 142732889 142733469 4142 - . gene_id "HERVIP10FH_8q24.3"; transcript_id "HERVIP10FH_8q24.3"; locus "HERVIP10FH_8q24.3"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0099"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### MER101_8q24.3b ### chr8 rmsk gene 142825520 142826021 . + . gene_id "MER101_8q24.3b"; transcript_id "MER101_8q24.3b"; locus "MER101_8q24.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0238"; model_cov "863"; model_pct "13.0"; chr8 rmsk exon 142825520 142826021 2286 + . gene_id "MER101_8q24.3b"; transcript_id "MER101_8q24.3b"; locus "MER101_8q24.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0238"; repClass "LTR"; repEnd "3458"; repFamily "ERV1"; repLeft "-3181"; repStart "2595"; ### MER101_8q24.3c ### chr8 rmsk gene 142826329 142829911 . + . gene_id "MER101_8q24.3c"; transcript_id "MER101_8q24.3c"; locus "MER101_8q24.3c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0239"; model_cov "873"; model_pct "13.1"; chr8 rmsk exon 142826329 142826371 2286 + . gene_id "MER101_8q24.3c"; transcript_id "MER101_8q24.3c"; locus "MER101_8q24.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0239"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "-3966"; repStart "2633"; chr8 rmsk exon 142827880 142828351 2286 + . gene_id "MER101_8q24.3c"; transcript_id "MER101_8q24.3c"; locus "MER101_8q24.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0239"; repClass "LTR"; repEnd "3224"; repFamily "ERV1"; repLeft "-3415"; repStart "2674"; chr8 rmsk exon 142828659 142828842 2286 + . gene_id "MER101_8q24.3c"; transcript_id "MER101_8q24.3c"; locus "MER101_8q24.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0239"; repClass "LTR"; repEnd "3403"; repFamily "ERV1"; repLeft "-3236"; repStart "3225"; chr8 rmsk exon 142829805 142829911 2286 + . gene_id "MER101_8q24.3c"; transcript_id "MER101_8q24.3c"; locus "MER101_8q24.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0239"; repClass "LTR"; repEnd "3509"; repFamily "ERV1"; repLeft "-3130"; repStart "3404"; ### ERVLB4_8q24.3b ### chr8 rmsk gene 142867430 142870424 . - . gene_id "ERVLB4_8q24.3b"; transcript_id "ERVLB4_8q24.3b"; locus "ERVLB4_8q24.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0994"; model_cov "1876"; model_pct "32.8"; chr8 rmsk exon 142867430 142867689 1510 - . gene_id "ERVLB4_8q24.3b"; transcript_id "ERVLB4_8q24.3b"; locus "ERVLB4_8q24.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0994"; repClass "LTR"; repEnd "334"; repFamily "ERVL"; repLeft "74"; repStart "-63"; chr8 rmsk exon 142868104 142868168 1510 - . gene_id "ERVLB4_8q24.3b"; transcript_id "ERVLB4_8q24.3b"; locus "ERVLB4_8q24.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_0994"; repClass "LTR"; repEnd "73"; repFamily "ERVL"; repLeft "1"; repStart "-324"; chr8 rmsk exon 142868174 142868287 8707 - . gene_id "ERVLB4_8q24.3b"; transcript_id "ERVLB4_8q24.3b"; locus "ERVLB4_8q24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0994"; repClass "LTR"; repEnd "2621"; repFamily "ERVL"; repLeft "2512"; repStart "-3093"; chr8 rmsk exon 142868699 142870424 8707 - . gene_id "ERVLB4_8q24.3b"; transcript_id "ERVLB4_8q24.3b"; locus "ERVLB4_8q24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0994"; repClass "LTR"; repEnd "2511"; repFamily "ERVL"; repLeft "744"; repStart "-3203"; ### ERVLB4_8q24.3c ### chr8 rmsk gene 142899525 142903605 . + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0995"; model_cov "2539"; model_pct "44.4"; chr8 rmsk exon 142899525 142899665 613 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "149"; repFamily "ERVL"; repLeft "-265"; repStart "3"; chr8 rmsk exon 142899680 142900399 11042 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "2799"; repFamily "ERVL"; repLeft "-2915"; repStart "2086"; chr8 rmsk exon 142900580 142900601 11042 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "2809"; repFamily "ERVL"; repLeft "-2905"; repStart "2800"; chr8 rmsk exon 142900996 142902572 11042 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "4411"; repFamily "ERVL"; repLeft "-1303"; repStart "2810"; chr8 rmsk exon 142902626 142902817 785 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5496"; chr8 rmsk exon 142902819 142902876 1678 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "-360"; repStart "1"; chr8 rmsk exon 142903258 142903605 1678 + . gene_id "ERVLB4_8q24.3c"; transcript_id "ERVLB4_8q24.3c"; locus "ERVLB4_8q24.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_0995"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "-3"; repStart "55"; ### HERVL74_8q24.3 ### chr8 rmsk gene 142905294 142908509 . + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0056"; model_cov "2041"; model_pct "35.9"; chr8 rmsk exon 142905294 142906165 1830 + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0056"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-2403"; repStart "2297"; chr8 rmsk exon 142906291 142906639 912 + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0056"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "-2034"; repStart "3295"; chr8 rmsk exon 142906720 142906884 634 + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0056"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "-1460"; repStart "4059"; chr8 rmsk exon 142906880 142907016 425 + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0056"; repClass "LTR"; repEnd "4689"; repFamily "ERVL"; repLeft "-996"; repStart "4553"; chr8 rmsk exon 142908115 142908509 1188 + . gene_id "HERVL74_8q24.3"; transcript_id "HERVL74_8q24.3"; locus "HERVL74_8q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0056"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "-427"; repStart "4860"; ### MER41_8q24.3 ### chr8 rmsk gene 142958887 142966057 . + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0311"; model_cov "3767"; model_pct "63.4"; chr8 rmsk exon 142958887 142959238 1701 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "1677"; repFamily "ERV1"; repLeft "-4269"; repStart "1388"; chr8 rmsk exon 142959226 142959296 650 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "1953"; repFamily "ERV1"; repLeft "-3993"; repStart "1866"; chr8 rmsk exon 142960880 142960949 650 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1954"; chr8 rmsk exon 142960946 142960996 283 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "-3726"; repStart "2167"; chr8 rmsk exon 142960993 142962730 12599 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "4440"; repFamily "ERV1"; repLeft "-1506"; repStart "2667"; chr8 rmsk exon 142963046 142964082 12599 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "5478"; repFamily "ERV1"; repLeft "-468"; repStart "4441"; chr8 rmsk exon 142965165 142965633 12599 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0311"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5479"; chr8 rmsk exon 142965634 142966057 3890 + . gene_id "MER41_8q24.3"; transcript_id "MER41_8q24.3"; locus "MER41_8q24.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0311"; repClass "LTR"; repEnd "432"; repFamily "ERV1"; repLeft "-122"; repStart "1"; ### PRIMA41_8q24.3 ### chr8 rmsk gene 143050063 143053296 . + . gene_id "PRIMA41_8q24.3"; transcript_id "PRIMA41_8q24.3"; locus "PRIMA41_8q24.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0081"; model_cov "1941"; model_pct "25.0"; chr8 rmsk exon 143050063 143050176 1620 + . gene_id "PRIMA41_8q24.3"; transcript_id "PRIMA41_8q24.3"; locus "PRIMA41_8q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0081"; repClass "LTR"; repEnd "4297"; repFamily "ERV1"; repLeft "-3459"; repStart "4209"; chr8 rmsk exon 143050481 143051280 1620 + . gene_id "PRIMA41_8q24.3"; transcript_id "PRIMA41_8q24.3"; locus "PRIMA41_8q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0081"; repClass "LTR"; repEnd "5086"; repFamily "ERV1"; repLeft "-2670"; repStart "4298"; chr8 rmsk exon 143051569 143051690 1620 + . gene_id "PRIMA41_8q24.3"; transcript_id "PRIMA41_8q24.3"; locus "PRIMA41_8q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0081"; repClass "LTR"; repEnd "5205"; repFamily "ERV1"; repLeft "-2551"; repStart "5087"; chr8 rmsk exon 143052293 143053296 1620 + . gene_id "PRIMA41_8q24.3"; transcript_id "PRIMA41_8q24.3"; locus "PRIMA41_8q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0081"; repClass "LTR"; repEnd "6153"; repFamily "ERV1"; repLeft "-1603"; repStart "5206"; ### PABLB_8q24.3b ### chr8 rmsk gene 143062997 143065669 . - . gene_id "PABLB_8q24.3b"; transcript_id "PABLB_8q24.3b"; locus "PABLB_8q24.3b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0060"; model_cov "2666"; model_pct "37.4"; chr8 rmsk exon 143062997 143063432 1938 - . gene_id "PABLB_8q24.3b"; transcript_id "PABLB_8q24.3b"; locus "PABLB_8q24.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0060"; repClass "LTR"; repEnd "5370"; repFamily "ERV1"; repLeft "4926"; repStart "-1752"; chr8 rmsk exon 143063429 143064786 6552 - . gene_id "PABLB_8q24.3b"; transcript_id "PABLB_8q24.3b"; locus "PABLB_8q24.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0060"; repClass "LTR"; repEnd "4061"; repFamily "ERV1"; repLeft "2690"; repStart "-3061"; chr8 rmsk exon 143064785 143064955 875 - . gene_id "PABLB_8q24.3b"; transcript_id "PABLB_8q24.3b"; locus "PABLB_8q24.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0060"; repClass "LTR"; repEnd "1369"; repFamily "ERV1"; repLeft "1200"; repStart "-5753"; chr8 rmsk exon 143065023 143065669 1106 - . gene_id "PABLB_8q24.3b"; transcript_id "PABLB_8q24.3b"; locus "PABLB_8q24.3b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0060"; repClass "LTR"; repEnd "1134"; repFamily "ERV1"; repLeft "452"; repStart "-5988"; ### ERVLE_8q24.3g ### chr8 rmsk gene 143102918 143105075 . - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2220"; model_cov "1226"; model_pct "21.6"; chr8 rmsk exon 143102918 143103217 605 - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2220"; repClass "LTR"; repEnd "3987"; repFamily "ERVL"; repLeft "3669"; repStart "-1680"; chr8 rmsk exon 143103896 143104111 470 - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2220"; repClass "LTR"; repEnd "3667"; repFamily "ERVL"; repLeft "3456"; repStart "-2000"; chr8 rmsk exon 143104441 143104528 292 - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2220"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "3177"; repStart "-2401"; chr8 rmsk exon 143104503 143104706 638 - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2220"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "2733"; repStart "-2726"; chr8 rmsk exon 143104705 143105075 442 - . gene_id "ERVLE_8q24.3g"; transcript_id "ERVLE_8q24.3g"; locus "ERVLE_8q24.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2220"; repClass "LTR"; repEnd "2080"; repFamily "ERVL"; repLeft "1680"; repStart "-3587"; ### MER4B_8q24.3 ### chr8 rmsk gene 143108957 143114047 . - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0252"; model_cov "2720"; model_pct "40.2"; chr8 rmsk exon 143108957 143109554 1892 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "6070"; repFamily "ERV1"; repLeft "5495"; repStart "-688"; chr8 rmsk exon 143109777 143109870 522 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "5857"; repFamily "ERV1"; repLeft "5761"; repStart "-901"; chr8 rmsk exon 143110444 143110505 3740 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "4648"; repStart "-2055"; chr8 rmsk exon 143110803 143111367 3740 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "4647"; repFamily "ERV1"; repLeft "4101"; repStart "-2111"; chr8 rmsk exon 143111640 143112124 3839 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "4100"; repFamily "ERV1"; repLeft "3649"; repStart "-2658"; chr8 rmsk exon 143112707 143113397 3712 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "2944"; repStart "-3106"; chr8 rmsk exon 143113707 143114047 3712 - . gene_id "MER4B_8q24.3"; transcript_id "MER4B_8q24.3"; locus "MER4B_8q24.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0252"; repClass "LTR"; repEnd "2943"; repFamily "ERV1"; repLeft "2654"; repStart "-3815"; ### HERV4_8q24.3 ### chr8 rmsk gene 143176341 143180015 . - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0079"; model_cov "2326"; model_pct "35.6"; chr8 rmsk exon 143176341 143176733 2323 - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0079"; repClass "LTR"; repEnd "6203"; repFamily "ERV1"; repLeft "5807"; repStart "-336"; chr8 rmsk exon 143177081 143177591 2862 - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0079"; repClass "LTR"; repEnd "5820"; repFamily "ERV1"; repLeft "5301"; repStart "-719"; chr8 rmsk exon 143177582 143178817 3410 - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0079"; repClass "LTR"; repEnd "1935"; repFamily "ERV1"; repLeft "625"; repStart "-4604"; chr8 rmsk exon 143179353 143179453 281 - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0079"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-6437"; chr8 rmsk exon 143179485 143180015 2619 - . gene_id "HERV4_8q24.3"; transcript_id "HERV4_8q24.3"; locus "HERV4_8q24.3"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0079"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_8q24.3a ### chr8 rmsk gene 143195432 143196865 . + . gene_id "HERVL_8q24.3a"; transcript_id "HERVL_8q24.3a"; locus "HERVL_8q24.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0784"; model_cov "1089"; model_pct "19.3"; chr8 rmsk exon 143195432 143196486 7686 + . gene_id "HERVL_8q24.3a"; transcript_id "HERVL_8q24.3a"; locus "HERVL_8q24.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0784"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4565"; chr8 rmsk exon 143196487 143196561 546 + . gene_id "HERVL_8q24.3a"; transcript_id "HERVL_8q24.3a"; locus "HERVL_8q24.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0784"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "-378"; repStart "1"; chr8 rmsk exon 143196560 143196761 1462 + . gene_id "HERVL_8q24.3a"; transcript_id "HERVL_8q24.3a"; locus "HERVL_8q24.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0784"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-41"; repStart "192"; chr8 rmsk exon 143196827 143196865 1462 + . gene_id "HERVL_8q24.3a"; transcript_id "HERVL_8q24.3a"; locus "HERVL_8q24.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0784"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "413"; ### ERV316A3_8q24.3j ### chr8 rmsk gene 143664486 143665455 . - . gene_id "ERV316A3_8q24.3j"; transcript_id "ERV316A3_8q24.3j"; locus "ERV316A3_8q24.3j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1678"; model_cov "527"; model_pct "10.1"; chr8 rmsk exon 143664486 143664619 281 - . gene_id "ERV316A3_8q24.3j"; transcript_id "ERV316A3_8q24.3j"; locus "ERV316A3_8q24.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1678"; repClass "LTR"; repEnd "3077"; repFamily "ERVL"; repLeft "2938"; repStart "-2149"; chr8 rmsk exon 143664721 143664904 369 - . gene_id "ERV316A3_8q24.3j"; transcript_id "ERV316A3_8q24.3j"; locus "ERV316A3_8q24.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1678"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "2875"; repStart "-2161"; chr8 rmsk exon 143665263 143665455 379 - . gene_id "ERV316A3_8q24.3j"; transcript_id "ERV316A3_8q24.3j"; locus "ERV316A3_8q24.3j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1678"; repClass "LTR"; repEnd "2422"; repFamily "ERVL"; repLeft "2224"; repStart "-2804"; ### HARLEQUIN_8q24.3 ### chr8 rmsk gene 143675468 143680387 . + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0116"; model_cov "3529"; model_pct "51.2"; chr8 rmsk exon 143675468 143677606 21923 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "5508"; repFamily "ERV1"; repLeft "-1388"; repStart "3363"; chr8 rmsk exon 143677903 143678275 21923 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "-1025"; repStart "5509"; chr8 rmsk exon 143678581 143679000 21923 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "6330"; repFamily "ERV1"; repLeft "-566"; repStart "5872"; chr8 rmsk exon 143679082 143679501 21923 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "6791"; repFamily "ERV1"; repLeft "-105"; repStart "6331"; chr8 rmsk exon 143679817 143679941 21923 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6792"; chr8 rmsk exon 143679942 143680387 3490 + . gene_id "HARLEQUIN_8q24.3"; transcript_id "HARLEQUIN_8q24.3"; locus "HARLEQUIN_8q24.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0116"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_8q24.3d ### chr8 rmsk gene 143744356 143745392 . - . gene_id "ERVLB4_8q24.3d"; transcript_id "ERVLB4_8q24.3d"; locus "ERVLB4_8q24.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_0997"; model_cov "1011"; model_pct "17.7"; chr8 rmsk exon 143744356 143745215 1192 - . gene_id "ERVLB4_8q24.3d"; transcript_id "ERVLB4_8q24.3d"; locus "ERVLB4_8q24.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0997"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "1719"; repStart "-3085"; chr8 rmsk exon 143745292 143745392 304 - . gene_id "ERVLB4_8q24.3d"; transcript_id "ERVLB4_8q24.3d"; locus "ERVLB4_8q24.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_0997"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "1360"; repStart "-4253"; ### ERVLE_8q24.3h ### chr8 rmsk gene 143755107 143760187 . - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2222"; model_cov "2372"; model_pct "41.9"; chr8 rmsk exon 143755107 143755358 1421 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "4379"; repStart "-1019"; chr8 rmsk exon 143755664 143755954 1421 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "4069"; repStart "-1289"; chr8 rmsk exon 143756322 143756696 1977 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "3212"; repStart "-2061"; chr8 rmsk exon 143756989 143757333 1977 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "2860"; repStart "-2456"; chr8 rmsk exon 143757637 143757659 1977 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "2859"; repFamily "ERVL"; repLeft "2837"; repStart "-2808"; chr8 rmsk exon 143757808 143758138 1977 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "2836"; repFamily "ERVL"; repLeft "2506"; repStart "-2831"; chr8 rmsk exon 143759512 143760187 1657 - . gene_id "ERVLE_8q24.3h"; transcript_id "ERVLE_8q24.3h"; locus "ERVLE_8q24.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2222"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "1792"; repStart "-3178"; ### ERVLE_8q24.3i ### chr8 rmsk gene 143911304 143912821 . + . gene_id "ERVLE_8q24.3i"; transcript_id "ERVLE_8q24.3i"; locus "ERVLE_8q24.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2225"; model_cov "1500"; model_pct "26.5"; chr8 rmsk exon 143911304 143911509 289 + . gene_id "ERVLE_8q24.3i"; transcript_id "ERVLE_8q24.3i"; locus "ERVLE_8q24.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2225"; repClass "LTR"; repEnd "1866"; repFamily "ERVL"; repLeft "-3801"; repStart "1597"; chr8 rmsk exon 143911511 143911989 587 + . gene_id "ERVLE_8q24.3i"; transcript_id "ERVLE_8q24.3i"; locus "ERVLE_8q24.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2225"; repClass "LTR"; repEnd "2427"; repFamily "ERVL"; repLeft "-3240"; repStart "1811"; chr8 rmsk exon 143912139 143912418 529 + . gene_id "ERVLE_8q24.3i"; transcript_id "ERVLE_8q24.3i"; locus "ERVLE_8q24.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2225"; repClass "LTR"; repEnd "3012"; repFamily "ERVL"; repLeft "-2655"; repStart "2624"; chr8 rmsk exon 143912600 143912821 355 + . gene_id "ERVLE_8q24.3i"; transcript_id "ERVLE_8q24.3i"; locus "ERVLE_8q24.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2225"; repClass "LTR"; repEnd "3205"; repFamily "ERVL"; repLeft "-2462"; repStart "2978"; ### ERV316A3_8q24.3k ### chr8 rmsk gene 144856421 144858292 . + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1682"; model_cov "1482"; model_pct "28.4"; chr8 rmsk exon 144856421 144856572 405 + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1682"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "300"; chr8 rmsk exon 144856579 144856806 314 + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1682"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "-5004"; repStart "8"; chr8 rmsk exon 144856853 144857653 905 + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1682"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "-1269"; repStart "3182"; chr8 rmsk exon 144857810 144857993 598 + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1682"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-936"; repStart "4098"; chr8 rmsk exon 144857998 144858292 502 + . gene_id "ERV316A3_8q24.3k"; transcript_id "ERV316A3_8q24.3k"; locus "ERV316A3_8q24.3k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1682"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "-861"; repStart "4064"; ### LTR46_8q24.3 ### chr8 rmsk gene 144858831 144868579 . - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0009"; model_cov "6974"; model_pct "99.8"; chr8 rmsk exon 144858831 144859237 1942 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 144859550 144859846 1923 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "6979"; repFamily "ERV1"; repLeft "6674"; repStart "-6"; chr8 rmsk exon 144860169 144862390 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "6676"; repFamily "ERV1"; repLeft "4439"; repStart "-309"; chr8 rmsk exon 144862683 144863078 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "4438"; repFamily "ERV1"; repLeft "4041"; repStart "-2547"; chr8 rmsk exon 144863370 144865878 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "4040"; repFamily "ERV1"; repLeft "1462"; repStart "-2945"; chr8 rmsk exon 144866271 144866590 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "1461"; repFamily "ERV1"; repLeft "1156"; repStart "-5524"; chr8 rmsk exon 144866883 144867335 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "1155"; repFamily "ERV1"; repLeft "724"; repStart "-5830"; chr8 rmsk exon 144867643 144868353 38896 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "723"; repFamily "ERV1"; repLeft "2"; repStart "-6262"; chr8 rmsk exon 144868354 144868397 304 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "417"; repStart "0"; chr8 rmsk exon 144868424 144868579 508 - . gene_id "LTR46_8q24.3"; transcript_id "LTR46_8q24.3"; locus "LTR46_8q24.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0009"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "293"; repStart "-11"; ### HERVL_8q24.3b ### chr8 rmsk gene 144868593 144871050 . + . gene_id "HERVL_8q24.3b"; transcript_id "HERVL_8q24.3b"; locus "HERVL_8q24.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0785"; model_cov "815"; model_pct "14.4"; chr8 rmsk exon 144868593 144868834 1565 + . gene_id "HERVL_8q24.3b"; transcript_id "HERVL_8q24.3b"; locus "HERVL_8q24.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0785"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "192"; chr8 rmsk exon 144868835 144869179 2703 + . gene_id "HERVL_8q24.3b"; transcript_id "HERVL_8q24.3b"; locus "HERVL_8q24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0785"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "-5309"; repStart "1"; chr8 rmsk exon 144870584 144871050 3558 + . gene_id "HERVL_8q24.3b"; transcript_id "HERVL_8q24.3b"; locus "HERVL_8q24.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0785"; repClass "LTR"; repEnd "2509"; repFamily "ERVL"; repLeft "-3145"; repStart "2038"; ### HML3_8q24.3 ### chr8 rmsk gene 144871051 144873813 . + . gene_id "HML3_8q24.3"; transcript_id "HML3_8q24.3"; locus "HML3_8q24.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0146"; model_cov "2267"; model_pct "37.7"; chr8 rmsk exon 144871051 144871563 4147 + . gene_id "HML3_8q24.3"; transcript_id "HML3_8q24.3"; locus "HML3_8q24.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0146"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 144871564 144873813 17736 + . gene_id "HML3_8q24.3"; transcript_id "HML3_8q24.3"; locus "HML3_8q24.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0146"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-3753"; repStart "1"; ### HERVH_8q24.3 ### chr8 rmsk gene 144953919 144959998 . - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0735"; model_cov "5271"; model_pct "68.3"; chr8 rmsk exon 144953919 144954319 2650 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8 rmsk exon 144954320 144954704 2342 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7314"; repStart "0"; chr8 rmsk exon 144954697 144954914 1356 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8 rmsk exon 144954916 144955578 4430 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8 rmsk exon 144955581 144959586 28279 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr8 rmsk exon 144959589 144959998 2666 - . gene_id "HERVH_8q24.3"; transcript_id "HERVH_8q24.3"; locus "HERVH_8q24.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0735"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_8q24.3j ### chr8 rmsk gene 144970428 144972623 . - . gene_id "ERVLE_8q24.3j"; transcript_id "ERVLE_8q24.3j"; locus "ERVLE_8q24.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2229"; model_cov "1113"; model_pct "19.6"; chr8 rmsk exon 144970428 144970580 1464 - . gene_id "ERVLE_8q24.3j"; transcript_id "ERVLE_8q24.3j"; locus "ERVLE_8q24.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2229"; repClass "LTR"; repEnd "2066"; repFamily "ERVL"; repLeft "1874"; repStart "-3601"; chr8 rmsk exon 144971181 144971641 1464 - . gene_id "ERVLE_8q24.3j"; transcript_id "ERVLE_8q24.3j"; locus "ERVLE_8q24.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2229"; repClass "LTR"; repEnd "1873"; repFamily "ERVL"; repLeft "1413"; repStart "-3794"; chr8 rmsk exon 144972094 144972237 468 - . gene_id "ERVLE_8q24.3j"; transcript_id "ERVLE_8q24.3j"; locus "ERVLE_8q24.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2229"; repClass "LTR"; repEnd "1382"; repFamily "ERVL"; repLeft "1239"; repStart "-4285"; chr8 rmsk exon 144972337 144972623 499 - . gene_id "ERVLE_8q24.3j"; transcript_id "ERVLE_8q24.3j"; locus "ERVLE_8q24.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2229"; repClass "LTR"; repEnd "1041"; repFamily "ERVL"; repLeft "723"; repStart "-4626"; ### HERVK14C_8q24.3a ### chr8 rmsk gene 145019967 145021243 . + . gene_id "HERVK14C_8q24.3a"; transcript_id "HERVK14C_8q24.3a"; locus "HERVK14C_8q24.3a"; category "internal"; intModel "HERVK14C-int"; locid "HERVK14C-int_0018"; model_cov "1276"; model_pct "17.2"; chr8 rmsk exon 145019967 145021243 10847 + . gene_id "HERVK14C_8q24.3a"; transcript_id "HERVK14C_8q24.3a"; locus "HERVK14C_8q24.3a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0018"; repClass "LTR"; repEnd "4111"; repFamily "ERVK"; repLeft "-3323"; repStart "2835"; ### HML2_8q24.3b ### chr8 rmsk gene 145021244 145028834 . - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0076"; model_cov "5527"; model_pct "73.3"; chr8 rmsk exon 145021244 145022259 8134 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 145022262 145026351 27966 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "3452"; repStart "-2"; chr8 rmsk exon 145026350 145027823 7746 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1446"; repFamily "ERVK"; repLeft "1"; repStart "-6090"; chr8 rmsk exon 145027824 145028834 8116 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HERVK14C_8q24.3b ### chr8 rmsk gene 145028836 145032719 . + . gene_id "HERVK14C_8q24.3b"; transcript_id "HERVK14C_8q24.3b"; locus "HERVK14C_8q24.3b"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0019"; model_cov "3328"; model_pct "44.8"; chr8 rmsk exon 145028836 145032160 27602 + . gene_id "HERVK14C_8q24.3b"; transcript_id "HERVK14C_8q24.3b"; locus "HERVK14C_8q24.3b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0019"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "4106"; chr8 rmsk exon 145032161 145032719 4562 + . gene_id "HERVK14C_8q24.3b"; transcript_id "HERVK14C_8q24.3b"; locus "HERVK14C_8q24.3b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0019"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML4_8q24.3 ### chr8 rmsk gene 145055126 145066800 . + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0010"; model_cov "8544"; model_pct "100.0"; chr8 rmsk exon 145055126 145056118 8221 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 145056119 145056826 3144 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "717"; repFamily "ERVK"; repLeft "-7399"; repStart "1"; chr8 rmsk exon 145056944 145057007 264 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "834"; repFamily "ERVK"; repLeft "-7282"; repStart "762"; chr8 rmsk exon 145058311 145060549 8866 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "3165"; repFamily "ERVK"; repLeft "-4951"; repStart "964"; chr8 rmsk exon 145060549 145060602 406 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "2631"; repFamily "ERVK"; repLeft "-5485"; repStart "2578"; chr8 rmsk exon 145060622 145061827 5462 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "4387"; repFamily "ERVK"; repLeft "-3729"; repStart "3168"; chr8 rmsk exon 145062207 145065799 12683 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "0"; repStart "3833"; chr8 rmsk exon 145065800 145066800 8390 + . gene_id "HML4_8q24.3"; transcript_id "HML4_8q24.3"; locus "HML4_8q24.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0010"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVE_8q24.3b ### chr8 rmsk gene 145069366 145072029 . - . gene_id "HERVE_8q24.3b"; transcript_id "HERVE_8q24.3b"; locus "HERVE_8q24.3b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0091"; model_cov "2193"; model_pct "28.1"; chr8 rmsk exon 145069366 145069857 3839 - . gene_id "HERVE_8q24.3b"; transcript_id "HERVE_8q24.3b"; locus "HERVE_8q24.3b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0091"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr8 rmsk exon 145069858 145072029 17963 - . gene_id "HERVE_8q24.3b"; transcript_id "HERVE_8q24.3b"; locus "HERVE_8q24.3b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0091"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "5619"; repStart "-1"; ### ERV316A3_9p24.3a ### chr9 rmsk gene 1239670 1240853 . - . gene_id "ERV316A3_9p24.3a"; transcript_id "ERV316A3_9p24.3a"; locus "ERV316A3_9p24.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1684"; model_cov "1200"; model_pct "23.0"; chr9 rmsk exon 1239670 1240322 1008 - . gene_id "ERV316A3_9p24.3a"; transcript_id "ERV316A3_9p24.3a"; locus "ERV316A3_9p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1684"; repClass "LTR"; repEnd "2858"; repFamily "ERVL"; repLeft "2190"; repStart "-2368"; chr9 rmsk exon 1240331 1240853 894 - . gene_id "ERV316A3_9p24.3a"; transcript_id "ERV316A3_9p24.3a"; locus "ERV316A3_9p24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1684"; repClass "LTR"; repEnd "1786"; repFamily "ERVL"; repLeft "1254"; repStart "-3440"; ### ERV316A3_9p24.3b ### chr9 rmsk gene 1267075 1269356 . + . gene_id "ERV316A3_9p24.3b"; transcript_id "ERV316A3_9p24.3b"; locus "ERV316A3_9p24.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1685"; model_cov "1829"; model_pct "35.0"; chr9 rmsk exon 1267075 1267191 312 + . gene_id "ERV316A3_9p24.3b"; transcript_id "ERV316A3_9p24.3b"; locus "ERV316A3_9p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1685"; repClass "LTR"; repEnd "2882"; repFamily "ERVL"; repLeft "-2344"; repStart "2766"; chr9 rmsk exon 1267217 1267774 1155 + . gene_id "ERV316A3_9p24.3b"; transcript_id "ERV316A3_9p24.3b"; locus "ERV316A3_9p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1685"; repClass "LTR"; repEnd "3542"; repFamily "ERVL"; repLeft "-1684"; repStart "2950"; chr9 rmsk exon 1267804 1268952 1763 + . gene_id "ERV316A3_9p24.3b"; transcript_id "ERV316A3_9p24.3b"; locus "ERV316A3_9p24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1685"; repClass "LTR"; repEnd "5214"; repFamily "ERVL"; repLeft "-12"; repStart "4093"; chr9 rmsk exon 1268954 1269356 844 + . gene_id "ERV316A3_9p24.3b"; transcript_id "ERV316A3_9p24.3b"; locus "ERV316A3_9p24.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1685"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "14"; ### ERV316A3_9p24.3c ### chr9 rmsk gene 1377207 1383310 . + . gene_id "ERV316A3_9p24.3c"; transcript_id "ERV316A3_9p24.3c"; locus "ERV316A3_9p24.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1686"; model_cov "5324"; model_pct "100.0"; chr9 rmsk exon 1377207 1377630 1410 + . gene_id "ERV316A3_9p24.3c"; transcript_id "ERV316A3_9p24.3c"; locus "ERV316A3_9p24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1686"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-12"; repStart "1"; chr9 rmsk exon 1377643 1379279 4591 + . gene_id "ERV316A3_9p24.3c"; transcript_id "ERV316A3_9p24.3c"; locus "ERV316A3_9p24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1686"; repClass "LTR"; repEnd "1312"; repFamily "ERVL"; repLeft "-3914"; repStart "-427"; chr9 rmsk exon 1379408 1382777 4591 + . gene_id "ERV316A3_9p24.3c"; transcript_id "ERV316A3_9p24.3c"; locus "ERV316A3_9p24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1686"; repClass "LTR"; repEnd "4898"; repFamily "ERVL"; repLeft "-328"; repStart "1313"; chr9 rmsk exon 1382903 1383310 1148 + . gene_id "ERV316A3_9p24.3c"; transcript_id "ERV316A3_9p24.3c"; locus "ERV316A3_9p24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1686"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "12"; ### ERV316A3_9p24.3d ### chr9 rmsk gene 1526655 1530079 . - . gene_id "ERV316A3_9p24.3d"; transcript_id "ERV316A3_9p24.3d"; locus "ERV316A3_9p24.3d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1687"; model_cov "2229"; model_pct "42.7"; chr9 rmsk exon 1526655 1527049 891 - . gene_id "ERV316A3_9p24.3d"; transcript_id "ERV316A3_9p24.3d"; locus "ERV316A3_9p24.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1687"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "18"; repStart "-5"; chr9 rmsk exon 1527065 1529202 5088 - . gene_id "ERV316A3_9p24.3d"; transcript_id "ERV316A3_9p24.3d"; locus "ERV316A3_9p24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1687"; repClass "LTR"; repEnd "5215"; repFamily "ERVL"; repLeft "2986"; repStart "-11"; chr9 rmsk exon 1529714 1530079 676 - . gene_id "ERV316A3_9p24.3d"; transcript_id "ERV316A3_9p24.3d"; locus "ERV316A3_9p24.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1687"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "30"; repStart "-38"; ### HERVL_9p24.3 ### chr9 rmsk gene 1623443 1624821 . + . gene_id "HERVL_9p24.3"; transcript_id "HERVL_9p24.3"; locus "HERVL_9p24.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0787"; model_cov "820"; model_pct "14.5"; chr9 rmsk exon 1623443 1624262 5342 + . gene_id "HERVL_9p24.3"; transcript_id "HERVL_9p24.3"; locus "HERVL_9p24.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0787"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4834"; chr9 rmsk exon 1624263 1624821 2022 + . gene_id "HERVL_9p24.3"; transcript_id "HERVL_9p24.3"; locus "HERVL_9p24.3"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0787"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_9p24.3 ### chr9 rmsk gene 1773300 1777475 . - . gene_id "ERVLE_9p24.3"; transcript_id "ERVLE_9p24.3"; locus "ERVLE_9p24.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2231"; model_cov "4250"; model_pct "75.0"; chr9 rmsk exon 1773300 1775699 7711 - . gene_id "ERVLE_9p24.3"; transcript_id "ERVLE_9p24.3"; locus "ERVLE_9p24.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2231"; repClass "LTR"; repEnd "5126"; repFamily "ERVL"; repLeft "2552"; repStart "-541"; chr9 rmsk exon 1775832 1777475 7711 - . gene_id "ERVLE_9p24.3"; transcript_id "ERVLE_9p24.3"; locus "ERVLE_9p24.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2231"; repClass "LTR"; repEnd "2611"; repFamily "ERVL"; repLeft "935"; repStart "-3056"; ### HERVH_9p24.2a ### chr9 rmsk gene 2275706 2281524 . + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0736"; model_cov "5123"; model_pct "66.4"; chr9 rmsk exon 2275706 2276105 2860 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 2276108 2278979 15235 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 2278959 2279810 5989 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr9 rmsk exon 2279808 2280427 3100 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chr9 rmsk exon 2280429 2280645 1383 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 2280646 2281018 2304 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 2281019 2281524 3172 + . gene_id "HERVH_9p24.2a"; transcript_id "HERVH_9p24.2a"; locus "HERVH_9p24.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0736"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_9p24.2a ### chr9 rmsk gene 2341039 2343561 . + . gene_id "ERVLE_9p24.2a"; transcript_id "ERVLE_9p24.2a"; locus "ERVLE_9p24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2232"; model_cov "2756"; model_pct "48.6"; chr9 rmsk exon 2341039 2341487 387 + . gene_id "ERVLE_9p24.2a"; transcript_id "ERVLE_9p24.2a"; locus "ERVLE_9p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2232"; repClass "LTR"; repEnd "1173"; repFamily "ERVL"; repLeft "-4494"; repStart "736"; chr9 rmsk exon 2341492 2343075 2103 + . gene_id "ERVLE_9p24.2a"; transcript_id "ERVLE_9p24.2a"; locus "ERVLE_9p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2232"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "-1659"; repStart "2263"; chr9 rmsk exon 2343101 2343385 2103 + . gene_id "ERVLE_9p24.2a"; transcript_id "ERVLE_9p24.2a"; locus "ERVLE_9p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2232"; repClass "LTR"; repEnd "4280"; repFamily "ERVL"; repLeft "-1387"; repStart "3871"; chr9 rmsk exon 2343399 2343561 433 + . gene_id "ERVLE_9p24.2a"; transcript_id "ERVLE_9p24.2a"; locus "ERVLE_9p24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2232"; repClass "LTR"; repEnd "4597"; repFamily "ERVL"; repLeft "-1070"; repStart "4432"; ### HERVH_9p24.2b ### chr9 rmsk gene 2509687 2515547 . + . gene_id "HERVH_9p24.2b"; transcript_id "HERVH_9p24.2b"; locus "HERVH_9p24.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0737"; model_cov "5883"; model_pct "76.3"; chr9 rmsk exon 2509687 2510119 2476 + . gene_id "HERVH_9p24.2b"; transcript_id "HERVH_9p24.2b"; locus "HERVH_9p24.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0737"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 2510120 2514976 15751 + . gene_id "HERVH_9p24.2b"; transcript_id "HERVH_9p24.2b"; locus "HERVH_9p24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0737"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "1060"; chr9 rmsk exon 2514966 2515498 3263 + . gene_id "HERVH_9p24.2b"; transcript_id "HERVH_9p24.2b"; locus "HERVH_9p24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0737"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7193"; chr9 rmsk exon 2515499 2515547 415 + . gene_id "HERVH_9p24.2b"; transcript_id "HERVH_9p24.2b"; locus "HERVH_9p24.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0737"; repClass "LTR"; repEnd "56"; repFamily "ERV1"; repLeft "-415"; repStart "8"; ### ERV316A3_9p24.2a ### chr9 rmsk gene 2849984 2853160 . - . gene_id "ERV316A3_9p24.2a"; transcript_id "ERV316A3_9p24.2a"; locus "ERV316A3_9p24.2a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1689"; model_cov "1775"; model_pct "34.0"; chr9 rmsk exon 2849984 2850454 1916 - . gene_id "ERV316A3_9p24.2a"; transcript_id "ERV316A3_9p24.2a"; locus "ERV316A3_9p24.2a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1689"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr9 rmsk exon 2850457 2851933 5705 - . gene_id "ERV316A3_9p24.2a"; transcript_id "ERV316A3_9p24.2a"; locus "ERV316A3_9p24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1689"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3743"; repStart "0"; chr9 rmsk exon 2851933 2852221 957 - . gene_id "ERV316A3_9p24.2a"; transcript_id "ERV316A3_9p24.2a"; locus "ERV316A3_9p24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1689"; repClass "LTR"; repEnd "2700"; repFamily "ERVL"; repLeft "2408"; repStart "-2526"; chr9 rmsk exon 2852708 2853160 1563 - . gene_id "ERV316A3_9p24.2a"; transcript_id "ERV316A3_9p24.2a"; locus "ERV316A3_9p24.2a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1689"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "-27"; ### ERVLE_9p24.2b ### chr9 rmsk gene 2936130 2937740 . + . gene_id "ERVLE_9p24.2b"; transcript_id "ERVLE_9p24.2b"; locus "ERVLE_9p24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2233"; model_cov "1390"; model_pct "24.5"; chr9 rmsk exon 2936130 2936428 405 + . gene_id "ERVLE_9p24.2b"; transcript_id "ERVLE_9p24.2b"; locus "ERVLE_9p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2233"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "-4877"; repStart "484"; chr9 rmsk exon 2936710 2937740 1296 + . gene_id "ERVLE_9p24.2b"; transcript_id "ERVLE_9p24.2b"; locus "ERVLE_9p24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2233"; repClass "LTR"; repEnd "2162"; repFamily "ERVL"; repLeft "-3505"; repStart "1078"; ### HUERSP3_9p24.2 ### chr9 rmsk gene 3085082 3088650 . + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0116"; model_cov "2578"; model_pct "28.9"; chr9 rmsk exon 3085082 3085605 3281 + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0116"; repClass "LTR"; repEnd "6722"; repFamily "ERV1"; repLeft "-2197"; repStart "6198"; chr9 rmsk exon 3085606 3086774 13005 + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0116"; repClass "LTR"; repEnd "8058"; repFamily "ERV1"; repLeft "-861"; repStart "6863"; chr9 rmsk exon 3086834 3086850 13005 + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0116"; repClass "LTR"; repEnd "8077"; repFamily "ERV1"; repLeft "-842"; repStart "8059"; chr9 rmsk exon 3087159 3088006 13005 + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0116"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8078"; chr9 rmsk exon 3088007 3088650 3892 + . gene_id "HUERSP3_9p24.2"; transcript_id "HUERSP3_9p24.2"; locus "HUERSP3_9p24.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0116"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_9p24.2c ### chr9 rmsk gene 3214883 3215793 . + . gene_id "ERVLE_9p24.2c"; transcript_id "ERVLE_9p24.2c"; locus "ERVLE_9p24.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2234"; model_cov "1011"; model_pct "17.8"; chr9 rmsk exon 3214883 3215793 1079 + . gene_id "ERVLE_9p24.2c"; transcript_id "ERVLE_9p24.2c"; locus "ERVLE_9p24.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2234"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "-563"; repStart "4093"; ### ERV316A3_9p24.2b ### chr9 rmsk gene 3595086 3597037 . + . gene_id "ERV316A3_9p24.2b"; transcript_id "ERV316A3_9p24.2b"; locus "ERV316A3_9p24.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1690"; model_cov "1325"; model_pct "25.4"; chr9 rmsk exon 3595086 3596440 4136 + . gene_id "ERV316A3_9p24.2b"; transcript_id "ERV316A3_9p24.2b"; locus "ERV316A3_9p24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1690"; repClass "LTR"; repEnd "5057"; repFamily "ERVL"; repLeft "-169"; repStart "3732"; chr9 rmsk exon 3596490 3596757 1316 + . gene_id "ERV316A3_9p24.2b"; transcript_id "ERV316A3_9p24.2b"; locus "ERV316A3_9p24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1690"; repClass "LTR"; repEnd "296"; repFamily "ERVL"; repLeft "-142"; repStart "3"; chr9 rmsk exon 3596888 3597037 1316 + . gene_id "ERV316A3_9p24.2b"; transcript_id "ERV316A3_9p24.2b"; locus "ERV316A3_9p24.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1690"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "297"; ### HERVH_9p24.2c ### chr9 rmsk gene 3810901 3816765 . - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0738"; model_cov "5205"; model_pct "67.5"; chr9 rmsk exon 3810901 3811302 2876 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 3811303 3811675 2254 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr9 rmsk exon 3811676 3811891 1390 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 3811896 3812467 3808 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4575"; repStart "-2567"; chr9 rmsk exon 3812465 3812647 1334 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4488"; repStart "-3043"; chr9 rmsk exon 3812650 3813503 6451 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr9 rmsk exon 3813490 3816364 16194 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr9 rmsk exon 3816367 3816765 2638 - . gene_id "HERVH_9p24.2c"; transcript_id "HERVH_9p24.2c"; locus "HERVH_9p24.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0738"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_9p24.1a ### chr9 rmsk gene 4689689 4691080 . - . gene_id "ERVLE_9p24.1a"; transcript_id "ERVLE_9p24.1a"; locus "ERVLE_9p24.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2236"; model_cov "1126"; model_pct "19.9"; chr9 rmsk exon 4689689 4689936 705 - . gene_id "ERVLE_9p24.1a"; transcript_id "ERVLE_9p24.1a"; locus "ERVLE_9p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2236"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "4559"; repStart "-857"; chr9 rmsk exon 4690094 4690618 1087 - . gene_id "ERVLE_9p24.1a"; transcript_id "ERVLE_9p24.1a"; locus "ERVLE_9p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2236"; repClass "LTR"; repEnd "4533"; repFamily "ERVL"; repLeft "3991"; repStart "-1134"; chr9 rmsk exon 4690772 4691080 707 - . gene_id "ERVLE_9p24.1a"; transcript_id "ERVLE_9p24.1a"; locus "ERVLE_9p24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2236"; repClass "LTR"; repEnd "2854"; repFamily "ERVL"; repLeft "2521"; repStart "-2813"; ### HML5_9p24.1 ### chr9 rmsk gene 5228602 5231041 . + . gene_id "HML5_9p24.1"; transcript_id "HML5_9p24.1"; locus "HML5_9p24.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0074"; model_cov "1686"; model_pct "24.7"; chr9 rmsk exon 5228602 5228874 1670 + . gene_id "HML5_9p24.1"; transcript_id "HML5_9p24.1"; locus "HML5_9p24.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0074"; repClass "LTR"; repEnd "281"; repFamily "ERVK"; repLeft "-245"; repStart "1"; chr9 rmsk exon 5228877 5230547 12418 + . gene_id "HML5_9p24.1"; transcript_id "HML5_9p24.1"; locus "HML5_9p24.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0074"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5151"; chr9 rmsk exon 5230548 5231041 3025 + . gene_id "HML5_9p24.1"; transcript_id "HML5_9p24.1"; locus "HML5_9p24.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0074"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_9p24.1a ### chr9 rmsk gene 5427701 5430265 . + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0256"; model_cov "895"; model_pct "16.2"; chr9 rmsk exon 5427701 5427729 1336 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "-6"; repStart "433"; chr9 rmsk exon 5427764 5427935 299 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "-5347"; repStart "20"; chr9 rmsk exon 5428046 5428398 903 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "1353"; repFamily "ERVL"; repLeft "-4177"; repStart "918"; chr9 rmsk exon 5429024 5429193 292 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "1544"; repFamily "ERVL"; repLeft "-3986"; repStart "1380"; chr9 rmsk exon 5429803 5429934 525 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "2815"; repFamily "ERVL"; repLeft "-2715"; repStart "2682"; chr9 rmsk exon 5429981 5430265 1137 + . gene_id "HERVL40_9p24.1a"; transcript_id "HERVL40_9p24.1a"; locus "HERVL40_9p24.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0256"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-1"; repStart "218"; ### ERV316A3_9p24.1 ### chr9 rmsk gene 5551314 5552634 . - . gene_id "ERV316A3_9p24.1"; transcript_id "ERV316A3_9p24.1"; locus "ERV316A3_9p24.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1691"; model_cov "586"; model_pct "11.2"; chr9 rmsk exon 5551314 5551788 737 - . gene_id "ERV316A3_9p24.1"; transcript_id "ERV316A3_9p24.1"; locus "ERV316A3_9p24.1"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1691"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "20"; repStart "-1"; chr9 rmsk exon 5551908 5552481 1319 - . gene_id "ERV316A3_9p24.1"; transcript_id "ERV316A3_9p24.1"; locus "ERV316A3_9p24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1691"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "4529"; repStart "-111"; chr9 rmsk exon 5552483 5552634 247 - . gene_id "ERV316A3_9p24.1"; transcript_id "ERV316A3_9p24.1"; locus "ERV316A3_9p24.1"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1691"; repClass "LTR"; repEnd "180"; repFamily "ERVL"; repLeft "6"; repStart "-358"; ### HERVL_9p24.1a ### chr9 rmsk gene 5738653 5740868 . - . gene_id "HERVL_9p24.1a"; transcript_id "HERVL_9p24.1a"; locus "HERVL_9p24.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0788"; model_cov "1781"; model_pct "31.5"; chr9 rmsk exon 5738653 5740418 13668 - . gene_id "HERVL_9p24.1a"; transcript_id "HERVL_9p24.1a"; locus "HERVL_9p24.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0788"; repClass "LTR"; repEnd "1782"; repFamily "ERVL"; repLeft "1"; repStart "-3872"; chr9 rmsk exon 5740419 5740868 3425 - . gene_id "HERVL_9p24.1a"; transcript_id "HERVL_9p24.1a"; locus "HERVL_9p24.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0788"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_9p24.1 ### chr9 rmsk gene 6020021 6022201 . + . gene_id "HERVH_9p24.1"; transcript_id "HERVH_9p24.1"; locus "HERVH_9p24.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0739"; model_cov "1796"; model_pct "23.3"; chr9 rmsk exon 6020021 6020467 3112 + . gene_id "HERVH_9p24.1"; transcript_id "HERVH_9p24.1"; locus "HERVH_9p24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0739"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 6020470 6022201 6355 + . gene_id "HERVH_9p24.1"; transcript_id "HERVH_9p24.1"; locus "HERVH_9p24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0739"; repClass "LTR"; repEnd "1797"; repFamily "ERV1"; repLeft "-5916"; repStart "1"; ### HERVI_9p24.1 ### chr9 rmsk gene 6078708 6087859 . + . gene_id "HERVI_9p24.1"; transcript_id "HERVI_9p24.1"; locus "HERVI_9p24.1"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0019"; model_cov "7782"; model_pct "100.0"; chr9 rmsk exon 6078708 6079215 3734 + . gene_id "HERVI_9p24.1"; transcript_id "HERVI_9p24.1"; locus "HERVI_9p24.1"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0019"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 6079232 6080313 1869 + . gene_id "HERVI_9p24.1"; transcript_id "HERVI_9p24.1"; locus "HERVI_9p24.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0019"; repClass "LTR"; repEnd "1171"; repFamily "ERV1"; repLeft "-6614"; repStart "14"; chr9 rmsk exon 6080644 6087331 37184 + . gene_id "HERVI_9p24.1"; transcript_id "HERVI_9p24.1"; locus "HERVI_9p24.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0019"; repClass "LTR"; repEnd "7769"; repFamily "ERV1"; repLeft "-16"; repStart "1144"; chr9 rmsk exon 6087348 6087859 3768 + . gene_id "HERVI_9p24.1"; transcript_id "HERVI_9p24.1"; locus "HERVI_9p24.1"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0019"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_9p24.1b ### chr9 rmsk gene 6099162 6105557 . + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0789"; model_cov "5772"; model_pct "100.0"; chr9 rmsk exon 6099162 6099361 1665 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "-244"; repStart "2"; chr9 rmsk exon 6099363 6104432 41354 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "-522"; repStart "34"; chr9 rmsk exon 6104431 6104586 1320 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "4474"; repFamily "ERVL"; repLeft "-1180"; repStart "4319"; chr9 rmsk exon 6104585 6105100 4172 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5134"; chr9 rmsk exon 6105102 6105492 3483 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr9 rmsk exon 6105518 6105557 3483 + . gene_id "HERVL_9p24.1b"; transcript_id "HERVL_9p24.1b"; locus "HERVL_9p24.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0789"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "404"; ### ERVLB4_9p24.1a ### chr9 rmsk gene 6145050 6150850 . - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1000"; model_cov "3502"; model_pct "61.3"; chr9 rmsk exon 6145050 6146511 8465 - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1000"; repClass "LTR"; repEnd "3511"; repFamily "ERVL"; repLeft "2014"; repStart "-2203"; chr9 rmsk exon 6147608 6148361 10733 - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1000"; repClass "LTR"; repEnd "2008"; repFamily "ERVL"; repLeft "1243"; repStart "-3706"; chr9 rmsk exon 6148747 6149375 10733 - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1000"; repClass "LTR"; repEnd "1242"; repFamily "ERVL"; repLeft "621"; repStart "-4472"; chr9 rmsk exon 6149764 6150380 10733 - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1000"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "1"; repStart "-5094"; chr9 rmsk exon 6150387 6150850 1699 - . gene_id "ERVLB4_9p24.1a"; transcript_id "ERVLB4_9p24.1a"; locus "ERVLB4_9p24.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1000"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "6"; repStart "-6"; ### ERVLB4_9p24.1b ### chr9 rmsk gene 6360840 6362691 . - . gene_id "ERVLB4_9p24.1b"; transcript_id "ERVLB4_9p24.1b"; locus "ERVLB4_9p24.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1001"; model_cov "2010"; model_pct "35.2"; chr9 rmsk exon 6360840 6362691 1340 - . gene_id "ERVLB4_9p24.1b"; transcript_id "ERVLB4_9p24.1b"; locus "ERVLB4_9p24.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1001"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "434"; repStart "-3270"; ### MER61_9p24.1a ### chr9 rmsk gene 6371399 6374199 . - . gene_id "MER61_9p24.1a"; transcript_id "MER61_9p24.1a"; locus "MER61_9p24.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0237"; model_cov "2507"; model_pct "48.1"; chr9 rmsk exon 6371399 6371460 384 - . gene_id "MER61_9p24.1a"; transcript_id "MER61_9p24.1a"; locus "MER61_9p24.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0237"; repClass "LTR"; repEnd "63"; repFamily "ERV1"; repLeft "1"; repStart "-278"; chr9 rmsk exon 6371461 6373702 17498 - . gene_id "MER61_9p24.1a"; transcript_id "MER61_9p24.1a"; locus "MER61_9p24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0237"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2909"; repStart "0"; chr9 rmsk exon 6373999 6374199 17498 - . gene_id "MER61_9p24.1a"; transcript_id "MER61_9p24.1a"; locus "MER61_9p24.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0237"; repClass "LTR"; repEnd "2908"; repFamily "ERV1"; repLeft "2709"; repStart "-2309"; ### MER61_9p24.1b ### chr9 rmsk gene 6382449 6385022 . - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0238"; model_cov "2014"; model_pct "38.6"; chr9 rmsk exon 6382449 6383570 8230 - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0238"; repClass "LTR"; repEnd "2721"; repFamily "ERV1"; repLeft "1578"; repStart "-2496"; chr9 rmsk exon 6383852 6384054 8230 - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0238"; repClass "LTR"; repEnd "1577"; repFamily "ERV1"; repLeft "1320"; repStart "-3640"; chr9 rmsk exon 6384029 6384095 337 - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0238"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "731"; repStart "-4418"; chr9 rmsk exon 6384158 6384696 2712 - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0238"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "3"; repStart "-4668"; chr9 rmsk exon 6384698 6385022 1975 - . gene_id "MER61_9p24.1b"; transcript_id "MER61_9p24.1b"; locus "MER61_9p24.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0238"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_9p24.1b ### chr9 rmsk gene 6652653 6654143 . + . gene_id "ERVLE_9p24.1b"; transcript_id "ERVLE_9p24.1b"; locus "ERVLE_9p24.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2240"; model_cov "1218"; model_pct "21.5"; chr9 rmsk exon 6652653 6652749 252 + . gene_id "ERVLE_9p24.1b"; transcript_id "ERVLE_9p24.1b"; locus "ERVLE_9p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2240"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-5058"; repStart "513"; chr9 rmsk exon 6652858 6653196 1476 + . gene_id "ERVLE_9p24.1b"; transcript_id "ERVLE_9p24.1b"; locus "ERVLE_9p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2240"; repClass "LTR"; repEnd "1155"; repFamily "ERVL"; repLeft "-4512"; repStart "792"; chr9 rmsk exon 6653501 6654143 1476 + . gene_id "ERVLE_9p24.1b"; transcript_id "ERVLE_9p24.1b"; locus "ERVLE_9p24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2240"; repClass "LTR"; repEnd "1846"; repFamily "ERVL"; repLeft "-3821"; repStart "1087"; ### ERVLE_9p24.1c ### chr9 rmsk gene 7439458 7441804 . + . gene_id "ERVLE_9p24.1c"; transcript_id "ERVLE_9p24.1c"; locus "ERVLE_9p24.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2242"; model_cov "2072"; model_pct "36.6"; chr9 rmsk exon 7439458 7439619 563 + . gene_id "ERVLE_9p24.1c"; transcript_id "ERVLE_9p24.1c"; locus "ERVLE_9p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2242"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "-2836"; repStart "2669"; chr9 rmsk exon 7439635 7440344 1419 + . gene_id "ERVLE_9p24.1c"; transcript_id "ERVLE_9p24.1c"; locus "ERVLE_9p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2242"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-1931"; repStart "2884"; chr9 rmsk exon 7440649 7440727 1122 + . gene_id "ERVLE_9p24.1c"; transcript_id "ERVLE_9p24.1c"; locus "ERVLE_9p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2242"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1858"; repStart "3737"; chr9 rmsk exon 7440810 7441804 1465 + . gene_id "ERVLE_9p24.1c"; transcript_id "ERVLE_9p24.1c"; locus "ERVLE_9p24.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2242"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "-737"; repStart "3944"; ### ERVLE_9p24.1d ### chr9 rmsk gene 7614201 7621491 . + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2243"; model_cov "2200"; model_pct "38.8"; chr9 rmsk exon 7614201 7614756 1802 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "-59"; repStart "3"; chr9 rmsk exon 7614798 7614946 514 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "-5520"; repStart "1"; chr9 rmsk exon 7614943 7615558 1626 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "2684"; repFamily "ERVL"; repLeft "-2983"; repStart "1990"; chr9 rmsk exon 7617170 7617788 2164 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "-1314"; repStart "3707"; chr9 rmsk exon 7617867 7618120 2237 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4467"; chr9 rmsk exon 7618721 7619106 2237 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-525"; repStart "4723"; chr9 rmsk exon 7621451 7621491 270 + . gene_id "ERVLE_9p24.1d"; transcript_id "ERVLE_9p24.1d"; locus "ERVLE_9p24.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2243"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "-460"; repStart "5167"; ### HERVL18_9p24.1 ### chr9 rmsk gene 7785466 7791928 . - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0093"; model_cov "4896"; model_pct "81.0"; chr9 rmsk exon 7785466 7786028 2250 - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0093"; repClass "LTR"; repEnd "604"; repFamily "ERVL"; repLeft "1"; repStart "-10"; chr9 rmsk exon 7786182 7787822 9982 - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0093"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4394"; repStart "0"; chr9 rmsk exon 7787825 7788736 4705 - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0093"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr9 rmsk exon 7788736 7791036 12479 - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0093"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "68"; repStart "-3595"; chr9 rmsk exon 7791320 7791928 2272 - . gene_id "HERVL18_9p24.1"; transcript_id "HERVL18_9p24.1"; locus "HERVL18_9p24.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0093"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVL40_9p24.1b ### chr9 rmsk gene 7828379 7833016 . - . gene_id "HERVL40_9p24.1b"; transcript_id "HERVL40_9p24.1b"; locus "HERVL40_9p24.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0259"; model_cov "2417"; model_pct "43.7"; chr9 rmsk exon 7828379 7828892 2124 - . gene_id "HERVL40_9p24.1b"; transcript_id "HERVL40_9p24.1b"; locus "HERVL40_9p24.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0259"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 7828893 7829124 737 - . gene_id "HERVL40_9p24.1b"; transcript_id "HERVL40_9p24.1b"; locus "HERVL40_9p24.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0259"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5277"; repStart "0"; chr9 rmsk exon 7829895 7830224 716 - . gene_id "HERVL40_9p24.1b"; transcript_id "HERVL40_9p24.1b"; locus "HERVL40_9p24.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0259"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4427"; repStart "-870"; chr9 rmsk exon 7831118 7833016 6436 - . gene_id "HERVL40_9p24.1b"; transcript_id "HERVL40_9p24.1b"; locus "HERVL40_9p24.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0259"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "2330"; repStart "-1269"; ### MER41_9p24.1a ### chr9 rmsk gene 7847581 7850466 . + . gene_id "MER41_9p24.1a"; transcript_id "MER41_9p24.1a"; locus "MER41_9p24.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0312"; model_cov "3753"; model_pct "63.1"; chr9 rmsk exon 7847581 7850466 6447 + . gene_id "MER41_9p24.1a"; transcript_id "MER41_9p24.1a"; locus "MER41_9p24.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0312"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "-1905"; repStart "288"; ### HERVW_9p24.1 ### chr9 rmsk gene 8747224 8748523 . + . gene_id "HERVW_9p24.1"; transcript_id "HERVW_9p24.1"; locus "HERVW_9p24.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0188"; model_cov "996"; model_pct "11.5"; chr9 rmsk exon 8747224 8747885 5186 + . gene_id "HERVW_9p24.1"; transcript_id "HERVW_9p24.1"; locus "HERVW_9p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0188"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5352"; chr9 rmsk exon 8747879 8747917 298 + . gene_id "HERVW_9p24.1"; transcript_id "HERVW_9p24.1"; locus "HERVW_9p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0188"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr9 rmsk exon 8747908 8748196 2343 + . gene_id "HERVW_9p24.1"; transcript_id "HERVW_9p24.1"; locus "HERVW_9p24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0188"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr9 rmsk exon 8748197 8748523 2516 + . gene_id "HERVW_9p24.1"; transcript_id "HERVW_9p24.1"; locus "HERVW_9p24.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0188"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### MER41_9p24.1b ### chr9 rmsk gene 8823730 8826094 . - . gene_id "MER41_9p24.1b"; transcript_id "MER41_9p24.1b"; locus "MER41_9p24.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0313"; model_cov "1340"; model_pct "22.5"; chr9 rmsk exon 8823730 8824281 3957 - . gene_id "MER41_9p24.1b"; transcript_id "MER41_9p24.1b"; locus "MER41_9p24.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0313"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 8824282 8825578 8245 - . gene_id "MER41_9p24.1b"; transcript_id "MER41_9p24.1b"; locus "MER41_9p24.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0313"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4604"; repStart "-2"; chr9 rmsk exon 8825585 8826094 3589 - . gene_id "MER41_9p24.1b"; transcript_id "MER41_9p24.1b"; locus "MER41_9p24.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0313"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "1"; repStart "-32"; ### HERVL18_9p23 ### chr9 rmsk gene 9557783 9561261 . - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0095"; model_cov "2061"; model_pct "34.1"; chr9 rmsk exon 9557783 9558405 3101 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 9558607 9559162 3071 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2949"; repStart "-2556"; chr9 rmsk exon 9559159 9559291 728 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2949"; repStart "-2963"; chr9 rmsk exon 9559288 9559565 1191 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2718"; repStart "-2963"; chr9 rmsk exon 9559563 9559790 715 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr9 rmsk exon 9559790 9560156 1056 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1375"; repStart "-4237"; chr9 rmsk exon 9560356 9560606 1399 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "287"; repFamily "ERVL"; repLeft "37"; repStart "-5760"; chr9 rmsk exon 9560646 9561261 2939 - . gene_id "HERVL18_9p23"; transcript_id "HERVL18_9p23"; locus "HERVL18_9p23"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0095"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_9p23a ### chr9 rmsk gene 9834296 9836533 . + . gene_id "ERVLB4_9p23a"; transcript_id "ERVLB4_9p23a"; locus "ERVLB4_9p23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1003"; model_cov "1983"; model_pct "34.7"; chr9 rmsk exon 9834296 9834934 1206 + . gene_id "ERVLB4_9p23a"; transcript_id "ERVLB4_9p23a"; locus "ERVLB4_9p23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1003"; repClass "LTR"; repEnd "2527"; repFamily "ERVL"; repLeft "-3187"; repStart "1863"; chr9 rmsk exon 9835172 9835450 329 + . gene_id "ERVLB4_9p23a"; transcript_id "ERVLB4_9p23a"; locus "ERVLB4_9p23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1003"; repClass "LTR"; repEnd "3444"; repFamily "ERVL"; repLeft "-2270"; repStart "3154"; chr9 rmsk exon 9835517 9836533 1216 + . gene_id "ERVLB4_9p23a"; transcript_id "ERVLB4_9p23a"; locus "ERVLB4_9p23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1003"; repClass "LTR"; repEnd "4240"; repFamily "ERVL"; repLeft "-1474"; repStart "3211"; ### ERVLE_9p23a ### chr9 rmsk gene 9951185 9952995 . + . gene_id "ERVLE_9p23a"; transcript_id "ERVLE_9p23a"; locus "ERVLE_9p23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2244"; model_cov "1512"; model_pct "26.7"; chr9 rmsk exon 9951185 9952236 886 + . gene_id "ERVLE_9p23a"; transcript_id "ERVLE_9p23a"; locus "ERVLE_9p23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2244"; repClass "LTR"; repEnd "1337"; repFamily "ERVL"; repLeft "-4330"; repStart "283"; chr9 rmsk exon 9952554 9952995 667 + . gene_id "ERVLE_9p23a"; transcript_id "ERVLE_9p23a"; locus "ERVLE_9p23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2244"; repClass "LTR"; repEnd "2169"; repFamily "ERVL"; repLeft "-3498"; repStart "1711"; ### HUERSP2_9p23 ### chr9 rmsk gene 9989179 9990546 . + . gene_id "HUERSP2_9p23"; transcript_id "HUERSP2_9p23"; locus "HUERSP2_9p23"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0073"; model_cov "476"; model_pct "15.4"; chr9 rmsk exon 9989179 9989994 4760 + . gene_id "HUERSP2_9p23"; transcript_id "HUERSP2_9p23"; locus "HUERSP2_9p23"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0073"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 9990098 9990546 1473 + . gene_id "HUERSP2_9p23"; transcript_id "HUERSP2_9p23"; locus "HUERSP2_9p23"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0073"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "-2538"; repStart "74"; ### HUERSP3_9p23 ### chr9 rmsk gene 9997607 10001203 . + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0117"; model_cov "1885"; model_pct "21.1"; chr9 rmsk exon 9997607 9998065 2140 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-183"; repStart "7"; chr9 rmsk exon 9998157 9998518 2609 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "3253"; repFamily "ERV1"; repLeft "-5666"; repStart "2883"; chr9 rmsk exon 9998522 9998671 676 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4539"; chr9 rmsk exon 9998675 9999079 2579 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "5320"; repFamily "ERV1"; repLeft "-3599"; repStart "4903"; chr9 rmsk exon 9999067 9999840 3476 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "8453"; repFamily "ERV1"; repLeft "-466"; repStart "7715"; chr9 rmsk exon 10000332 10000585 1355 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8701"; chr9 rmsk exon 10000586 10001203 2998 + . gene_id "HUERSP3_9p23"; transcript_id "HUERSP3_9p23"; locus "HUERSP3_9p23"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0117"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLE_9p23b ### chr9 rmsk gene 10678800 10681294 . - . gene_id "ERVLE_9p23b"; transcript_id "ERVLE_9p23b"; locus "ERVLE_9p23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2245"; model_cov "2141"; model_pct "37.8"; chr9 rmsk exon 10678800 10680332 2589 - . gene_id "ERVLE_9p23b"; transcript_id "ERVLE_9p23b"; locus "ERVLE_9p23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2245"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "2052"; repStart "-2078"; chr9 rmsk exon 10680682 10681294 2589 - . gene_id "ERVLE_9p23b"; transcript_id "ERVLE_9p23b"; locus "ERVLE_9p23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2245"; repClass "LTR"; repEnd "2064"; repFamily "ERVL"; repLeft "1460"; repStart "-3603"; ### ERV316A3_9p23a ### chr9 rmsk gene 10699447 10703017 . - . gene_id "ERV316A3_9p23a"; transcript_id "ERV316A3_9p23a"; locus "ERV316A3_9p23a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1692"; model_cov "2862"; model_pct "54.8"; chr9 rmsk exon 10699447 10700281 1833 - . gene_id "ERV316A3_9p23a"; transcript_id "ERV316A3_9p23a"; locus "ERV316A3_9p23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1692"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "3573"; repStart "-756"; chr9 rmsk exon 10700537 10702044 3773 - . gene_id "ERV316A3_9p23a"; transcript_id "ERV316A3_9p23a"; locus "ERV316A3_9p23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1692"; repClass "LTR"; repEnd "3123"; repFamily "ERVL"; repLeft "1648"; repStart "-2103"; chr9 rmsk exon 10702111 10702355 947 - . gene_id "ERV316A3_9p23a"; transcript_id "ERV316A3_9p23a"; locus "ERV316A3_9p23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1692"; repClass "LTR"; repEnd "804"; repFamily "ERVL"; repLeft "566"; repStart "-4422"; chr9 rmsk exon 10702762 10703017 947 - . gene_id "ERV316A3_9p23a"; transcript_id "ERV316A3_9p23a"; locus "ERV316A3_9p23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1692"; repClass "LTR"; repEnd "565"; repFamily "ERVL"; repLeft "313"; repStart "-4661"; ### ERVLE_9p23c ### chr9 rmsk gene 10784565 10786591 . - . gene_id "ERVLE_9p23c"; transcript_id "ERVLE_9p23c"; locus "ERVLE_9p23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2247"; model_cov "1333"; model_pct "23.5"; chr9 rmsk exon 10784565 10784834 376 - . gene_id "ERVLE_9p23c"; transcript_id "ERVLE_9p23c"; locus "ERVLE_9p23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2247"; repClass "LTR"; repEnd "2481"; repFamily "ERVL"; repLeft "2212"; repStart "-3186"; chr9 rmsk exon 10784892 10785760 958 - . gene_id "ERVLE_9p23c"; transcript_id "ERVLE_9p23c"; locus "ERVLE_9p23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2247"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1294"; repStart "-3495"; chr9 rmsk exon 10786404 10786591 366 - . gene_id "ERVLE_9p23c"; transcript_id "ERVLE_9p23c"; locus "ERVLE_9p23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2247"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "392"; repStart "-5089"; ### HERVL_9p23a ### chr9 rmsk gene 10793845 10798390 . - . gene_id "HERVL_9p23a"; transcript_id "HERVL_9p23a"; locus "HERVL_9p23a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0790"; model_cov "3102"; model_pct "54.9"; chr9 rmsk exon 10793845 10794421 2131 - . gene_id "HERVL_9p23a"; transcript_id "HERVL_9p23a"; locus "HERVL_9p23a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0790"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr9 rmsk exon 10794424 10797002 16042 - . gene_id "HERVL_9p23a"; transcript_id "HERVL_9p23a"; locus "HERVL_9p23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0790"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "3063"; repStart "-2"; chr9 rmsk exon 10797581 10797683 16042 - . gene_id "HERVL_9p23a"; transcript_id "HERVL_9p23a"; locus "HERVL_9p23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0790"; repClass "LTR"; repEnd "3062"; repFamily "ERVL"; repLeft "2979"; repStart "-2592"; chr9 rmsk exon 10798059 10798390 16042 - . gene_id "HERVL_9p23a"; transcript_id "HERVL_9p23a"; locus "HERVL_9p23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0790"; repClass "LTR"; repEnd "2978"; repFamily "ERVL"; repLeft "2548"; repStart "-2676"; ### HERVH_9p23a ### chr9 rmsk gene 10884982 10890804 . + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0740"; model_cov "5150"; model_pct "66.8"; chr9 rmsk exon 10884982 10885376 2368 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 10885379 10888188 14533 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 10888168 10888317 877 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 10888317 10888556 1598 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "3742"; repFamily "ERV1"; repLeft "-3971"; repStart "3500"; chr9 rmsk exon 10888545 10889718 7600 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3993"; chr9 rmsk exon 10889720 10889935 1418 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 10889936 10890312 2374 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 10890313 10890707 2265 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 10890710 10890804 740 + . gene_id "HERVH_9p23a"; transcript_id "HERVH_9p23a"; locus "HERVH_9p23a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0740"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "368"; ### HERVL_9p23b ### chr9 rmsk gene 10959659 10962281 . + . gene_id "HERVL_9p23b"; transcript_id "HERVL_9p23b"; locus "HERVL_9p23b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0791"; model_cov "2334"; model_pct "41.3"; chr9 rmsk exon 10959659 10960833 16780 + . gene_id "HERVL_9p23b"; transcript_id "HERVL_9p23b"; locus "HERVL_9p23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0791"; repClass "LTR"; repEnd "4520"; repFamily "ERVL"; repLeft "-1134"; repStart "3319"; chr9 rmsk exon 10961134 10962281 16780 + . gene_id "HERVL_9p23b"; transcript_id "HERVL_9p23b"; locus "HERVL_9p23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0791"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4521"; ### LTR19_9p23 ### chr9 rmsk gene 11229119 11235465 . - . gene_id "LTR19_9p23"; transcript_id "LTR19_9p23"; locus "LTR19_9p23"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0025"; model_cov "5585"; model_pct "100.0"; chr9 rmsk exon 11229119 11229592 3364 - . gene_id "LTR19_9p23"; transcript_id "LTR19_9p23"; locus "LTR19_9p23"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0025"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 11229593 11235078 41838 - . gene_id "LTR19_9p23"; transcript_id "LTR19_9p23"; locus "LTR19_9p23"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0025"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 11235080 11235465 2458 - . gene_id "LTR19_9p23"; transcript_id "LTR19_9p23"; locus "LTR19_9p23"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0025"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_9p23 ### chr9 rmsk gene 11254387 11260606 . - . gene_id "HML5_9p23"; transcript_id "HML5_9p23"; locus "HML5_9p23"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0075"; model_cov "5316"; model_pct "77.8"; chr9 rmsk exon 11254387 11254876 2248 - . gene_id "HML5_9p23"; transcript_id "HML5_9p23"; locus "HML5_9p23"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0075"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "-6"; repStart "0"; chr9 rmsk exon 11254877 11259386 34194 - . gene_id "HML5_9p23"; transcript_id "HML5_9p23"; locus "HML5_9p23"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0075"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2314"; repStart "0"; chr9 rmsk exon 11259370 11260122 4899 - . gene_id "HML5_9p23"; transcript_id "HML5_9p23"; locus "HML5_9p23"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0075"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "1"; repStart "-6043"; chr9 rmsk exon 11260123 11260606 2600 - . gene_id "HML5_9p23"; transcript_id "HML5_9p23"; locus "HML5_9p23"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0075"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_9p23a ### chr9 rmsk gene 11267532 11270411 . - . gene_id "LTR25_9p23a"; transcript_id "LTR25_9p23a"; locus "LTR25_9p23a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0068"; model_cov "2823"; model_pct "39.3"; chr9 rmsk exon 11267532 11268937 6777 - . gene_id "LTR25_9p23a"; transcript_id "LTR25_9p23a"; locus "LTR25_9p23a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0068"; repClass "LTR"; repEnd "3636"; repFamily "ERV1"; repLeft "2279"; repStart "-3552"; chr9 rmsk exon 11268967 11270411 6761 - . gene_id "LTR25_9p23a"; transcript_id "LTR25_9p23a"; locus "LTR25_9p23a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0068"; repClass "LTR"; repEnd "1765"; repFamily "ERV1"; repLeft "299"; repStart "-5423"; ### LTR25_9p23b ### chr9 rmsk gene 11274284 11275260 . + . gene_id "LTR25_9p23b"; transcript_id "LTR25_9p23b"; locus "LTR25_9p23b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0069"; model_cov "1009"; model_pct "14.0"; chr9 rmsk exon 11274284 11275260 4728 + . gene_id "LTR25_9p23b"; transcript_id "LTR25_9p23b"; locus "LTR25_9p23b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0069"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6178"; ### MER61_9p23 ### chr9 rmsk gene 11302939 11309057 . + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0239"; model_cov "4933"; model_pct "94.6"; chr9 rmsk exon 11302939 11303280 1660 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0239"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 11303281 11303670 1435 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0239"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "-4829"; repStart "2"; chr9 rmsk exon 11303669 11305127 25518 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0239"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "-3047"; repStart "666"; chr9 rmsk exon 11305418 11306133 25518 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0239"; repClass "LTR"; repEnd "2874"; repFamily "ERV1"; repLeft "-2343"; repStart "2171"; chr9 rmsk exon 11306456 11308733 25518 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0239"; repClass "LTR"; repEnd "5215"; repFamily "ERV1"; repLeft "-2"; repStart "2875"; chr9 rmsk exon 11308734 11309057 1520 + . gene_id "MER61_9p23"; transcript_id "MER61_9p23"; locus "MER61_9p23"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0239"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### ERVLB4_9p23b ### chr9 rmsk gene 11329386 11331879 . - . gene_id "ERVLB4_9p23b"; transcript_id "ERVLB4_9p23b"; locus "ERVLB4_9p23b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1004"; model_cov "1708"; model_pct "29.9"; chr9 rmsk exon 11329386 11329689 519 - . gene_id "ERVLB4_9p23b"; transcript_id "ERVLB4_9p23b"; locus "ERVLB4_9p23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1004"; repClass "LTR"; repEnd "3600"; repFamily "ERVL"; repLeft "3285"; repStart "-2114"; chr9 rmsk exon 11329816 11330566 854 - . gene_id "ERVLB4_9p23b"; transcript_id "ERVLB4_9p23b"; locus "ERVLB4_9p23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1004"; repClass "LTR"; repEnd "3284"; repFamily "ERVL"; repLeft "2514"; repStart "-2430"; chr9 rmsk exon 11331271 11331879 924 - . gene_id "ERVLB4_9p23b"; transcript_id "ERVLB4_9p23b"; locus "ERVLB4_9p23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1004"; repClass "LTR"; repEnd "2583"; repFamily "ERVL"; repLeft "1960"; repStart "-3131"; ### ERVLB4_9p23c ### chr9 rmsk gene 11412952 11416284 . + . gene_id "ERVLB4_9p23c"; transcript_id "ERVLB4_9p23c"; locus "ERVLB4_9p23c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1005"; model_cov "1464"; model_pct "25.6"; chr9 rmsk exon 11412952 11413166 1016 + . gene_id "ERVLB4_9p23c"; transcript_id "ERVLB4_9p23c"; locus "ERVLB4_9p23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1005"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-5183"; repStart "316"; chr9 rmsk exon 11414641 11414874 587 + . gene_id "ERVLB4_9p23c"; transcript_id "ERVLB4_9p23c"; locus "ERVLB4_9p23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1005"; repClass "LTR"; repEnd "818"; repFamily "ERVL"; repLeft "-4896"; repStart "549"; chr9 rmsk exon 11414881 11415098 3821 + . gene_id "ERVLB4_9p23c"; transcript_id "ERVLB4_9p23c"; locus "ERVLB4_9p23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1005"; repClass "LTR"; repEnd "4756"; repFamily "ERVL"; repLeft "-958"; repStart "4503"; chr9 rmsk exon 11415566 11416284 3821 + . gene_id "ERVLB4_9p23c"; transcript_id "ERVLB4_9p23c"; locus "ERVLB4_9p23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1005"; repClass "LTR"; repEnd "5484"; repFamily "ERVL"; repLeft "-230"; repStart "4757"; ### ERV316A3_9p23b ### chr9 rmsk gene 11450091 11455492 . + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1693"; model_cov "2364"; model_pct "45.2"; chr9 rmsk exon 11450091 11450668 2121 + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1693"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2551"; chr9 rmsk exon 11453028 11454081 2121 + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1693"; repClass "LTR"; repEnd "4272"; repFamily "ERVL"; repLeft "-954"; repStart "3137"; chr9 rmsk exon 11454503 11455122 1521 + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1693"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4582"; chr9 rmsk exon 11455219 11455379 304 + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1693"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "-181"; repStart "118"; chr9 rmsk exon 11455424 11455492 291 + . gene_id "ERV316A3_9p23b"; transcript_id "ERV316A3_9p23b"; locus "ERV316A3_9p23b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1693"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "382"; ### PRIMAX_9p23 ### chr9 rmsk gene 11489356 11489911 . - . gene_id "PRIMAX_9p23"; transcript_id "PRIMAX_9p23"; locus "PRIMAX_9p23"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0018"; model_cov "560"; model_pct "13.7"; chr9 rmsk exon 11489356 11489911 433 - . gene_id "PRIMAX_9p23"; transcript_id "PRIMAX_9p23"; locus "PRIMAX_9p23"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0018"; repClass "LTR"; repEnd "2318"; repFamily "ERV1"; repLeft "1758"; repStart "-1784"; ### ERV316A3_9p23c ### chr9 rmsk gene 11547963 11548988 . + . gene_id "ERV316A3_9p23c"; transcript_id "ERV316A3_9p23c"; locus "ERV316A3_9p23c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1694"; model_cov "1058"; model_pct "20.2"; chr9 rmsk exon 11547963 11548988 1076 + . gene_id "ERV316A3_9p23c"; transcript_id "ERV316A3_9p23c"; locus "ERV316A3_9p23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1694"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "-2648"; repStart "1520"; ### ERV316A3_9p23d ### chr9 rmsk gene 11551528 11552913 . + . gene_id "ERV316A3_9p23d"; transcript_id "ERV316A3_9p23d"; locus "ERV316A3_9p23d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1695"; model_cov "934"; model_pct "17.9"; chr9 rmsk exon 11551528 11551803 305 + . gene_id "ERV316A3_9p23d"; transcript_id "ERV316A3_9p23d"; locus "ERV316A3_9p23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1695"; repClass "LTR"; repEnd "3355"; repFamily "ERVL"; repLeft "-1871"; repStart "3076"; chr9 rmsk exon 11551861 11552057 555 + . gene_id "ERV316A3_9p23d"; transcript_id "ERV316A3_9p23d"; locus "ERV316A3_9p23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1695"; repClass "LTR"; repEnd "3992"; repFamily "ERVL"; repLeft "-1234"; repStart "3784"; chr9 rmsk exon 11552463 11552913 388 + . gene_id "ERV316A3_9p23d"; transcript_id "ERV316A3_9p23d"; locus "ERV316A3_9p23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1695"; repClass "LTR"; repEnd "4820"; repFamily "ERVL"; repLeft "-406"; repStart "4373"; ### MER4_9p23a ### chr9 rmsk gene 12137662 12139146 . + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0446"; model_cov "1053"; model_pct "16.0"; chr9 rmsk exon 12137662 12138110 3022 + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0446"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 12138113 12138438 2882 + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0446"; repClass "LTR"; repEnd "355"; repFamily "ERV1"; repLeft "-6243"; repStart "1"; chr9 rmsk exon 12138469 12138691 2882 + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0446"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "356"; chr9 rmsk exon 12138680 12138751 277 + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0446"; repClass "LTR"; repEnd "-652"; repFamily "ERV1"; repLeft "-7250"; repStart "-721"; chr9 rmsk exon 12138889 12139146 604 + . gene_id "MER4_9p23a"; transcript_id "MER4_9p23a"; locus "MER4_9p23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0446"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2128"; ### MER4_9p23b ### chr9 rmsk gene 12139224 12145019 . + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0447"; model_cov "5333"; model_pct "80.8"; chr9 rmsk exon 12139224 12139863 3901 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0447"; repClass "LTR"; repEnd "671"; repFamily "ERV1"; repLeft "-5927"; repStart "38"; chr9 rmsk exon 12139895 12140171 1335 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0447"; repClass "LTR"; repEnd "1028"; repFamily "ERV1"; repLeft "-5570"; repStart "764"; chr9 rmsk exon 12140183 12140886 4006 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0447"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1756"; chr9 rmsk exon 12141129 12141908 2557 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0447"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "2736"; chr9 rmsk exon 12141903 12144552 15710 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0447"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "3837"; chr9 rmsk exon 12144572 12145019 2911 + . gene_id "MER4_9p23b"; transcript_id "MER4_9p23b"; locus "MER4_9p23b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0447"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_9p23e ### chr9 rmsk gene 12525359 12525930 . + . gene_id "ERV316A3_9p23e"; transcript_id "ERV316A3_9p23e"; locus "ERV316A3_9p23e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1696"; model_cov "577"; model_pct "11.0"; chr9 rmsk exon 12525359 12525930 1076 + . gene_id "ERV316A3_9p23e"; transcript_id "ERV316A3_9p23e"; locus "ERV316A3_9p23e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1696"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "-4294"; repStart "355"; ### ERVLB4_9p23d ### chr9 rmsk gene 12853795 12854637 . + . gene_id "ERVLB4_9p23d"; transcript_id "ERVLB4_9p23d"; locus "ERVLB4_9p23d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1007"; model_cov "868"; model_pct "15.2"; chr9 rmsk exon 12853795 12854071 682 + . gene_id "ERVLB4_9p23d"; transcript_id "ERVLB4_9p23d"; locus "ERVLB4_9p23d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1007"; repClass "LTR"; repEnd "2876"; repFamily "ERVL"; repLeft "-2838"; repStart "2584"; chr9 rmsk exon 12854087 12854637 873 + . gene_id "ERVLB4_9p23d"; transcript_id "ERVLB4_9p23d"; locus "ERVLB4_9p23d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1007"; repClass "LTR"; repEnd "3583"; repFamily "ERVL"; repLeft "-2131"; repStart "3007"; ### HERVH_9p23b ### chr9 rmsk gene 12948345 12954128 . + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0742"; model_cov "4911"; model_pct "63.7"; chr9 rmsk exon 12948345 12948825 3195 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 12948828 12951746 16595 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr9 rmsk exon 12951741 12951888 856 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 12951879 12952383 3326 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 12952386 12953048 4299 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 12953046 12953274 1350 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr9 rmsk exon 12953273 12953647 2316 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 12953648 12954128 3212 + . gene_id "HERVH_9p23b"; transcript_id "HERVH_9p23b"; locus "HERVH_9p23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0742"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_9p23f ### chr9 rmsk gene 13761576 13766637 . - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1698"; model_cov "3811"; model_pct "72.9"; chr9 rmsk exon 13761576 13762410 1616 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "3878"; repStart "-519"; chr9 rmsk exon 13762608 13762849 663 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2863"; repStart "-2142"; chr9 rmsk exon 13763186 13765022 2217 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "934"; repStart "-2395"; chr9 rmsk exon 13765074 13765801 1086 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "843"; repFamily "ERVL"; repLeft "83"; repStart "-4383"; chr9 rmsk exon 13766134 13766210 1086 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "237"; repStart "-4885"; chr9 rmsk exon 13766219 13766637 1308 - . gene_id "ERV316A3_9p23f"; transcript_id "ERV316A3_9p23f"; locus "ERV316A3_9p23f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1698"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "5"; repStart "-4"; ### ERV316A3_9p23g ### chr9 rmsk gene 14002586 14006016 . - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1699"; model_cov "1991"; model_pct "38.1"; chr9 rmsk exon 14002586 14003013 1006 - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1699"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 14003438 14004877 2979 - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1699"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "3408"; repStart "-353"; chr9 rmsk exon 14004877 14005019 284 - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1699"; repClass "LTR"; repEnd "2037"; repFamily "ERVL"; repLeft "1875"; repStart "-3189"; chr9 rmsk exon 14005327 14005670 588 - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1699"; repClass "LTR"; repEnd "1465"; repFamily "ERVL"; repLeft "1101"; repStart "-3761"; chr9 rmsk exon 14005702 14006016 838 - . gene_id "ERV316A3_9p23g"; transcript_id "ERV316A3_9p23g"; locus "ERV316A3_9p23g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1699"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "6"; repStart "-109"; ### HUERSP3B_9p22.3 ### chr9 rmsk gene 14830619 14837443 . + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0077"; model_cov "5490"; model_pct "74.0"; chr9 rmsk exon 14830619 14830812 1270 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "451"; chr9 rmsk exon 14830814 14831328 1952 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "-6911"; repStart "2"; chr9 rmsk exon 14831359 14833084 6076 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "764"; chr9 rmsk exon 14833513 14834329 5638 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chr9 rmsk exon 14834323 14835172 11651 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "5914"; repFamily "ERV1"; repLeft "-1504"; repStart "5104"; chr9 rmsk exon 14835312 14836878 11651 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "5915"; chr9 rmsk exon 14836880 14837443 3272 + . gene_id "HUERSP3B_9p22.3"; transcript_id "HUERSP3B_9p22.3"; locus "HUERSP3B_9p22.3"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0077"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### MER41_9p22.3 ### chr9 rmsk gene 14891955 14896263 . + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0314"; model_cov "4029"; model_pct "67.8"; chr9 rmsk exon 14891955 14892054 732 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0314"; repClass "LTR"; repEnd "576"; repFamily "ERV1"; repLeft "-58"; repStart "478"; chr9 rmsk exon 14892090 14892149 401 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0314"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "491"; chr9 rmsk exon 14892150 14893041 5260 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0314"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-5106"; repStart "1"; chr9 rmsk exon 14893042 14893144 659 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0314"; repClass "LTR"; repEnd "1047"; repFamily "ERV1"; repLeft "-4899"; repStart "945"; chr9 rmsk exon 14893676 14895928 13536 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0314"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2856"; chr9 rmsk exon 14895929 14896263 3447 + . gene_id "MER41_9p22.3"; transcript_id "MER41_9p22.3"; locus "MER41_9p22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0314"; repClass "LTR"; repEnd "330"; repFamily "ERV1"; repLeft "-224"; repStart "1"; ### MER4B_9p22.3 ### chr9 rmsk gene 15371652 15373640 . + . gene_id "MER4B_9p22.3"; transcript_id "MER4B_9p22.3"; locus "MER4B_9p22.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0255"; model_cov "1635"; model_pct "24.2"; chr9 rmsk exon 15371652 15371863 5461 + . gene_id "MER4B_9p22.3"; transcript_id "MER4B_9p22.3"; locus "MER4B_9p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0255"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "-6526"; repStart "22"; chr9 rmsk exon 15372155 15372929 5461 + . gene_id "MER4B_9p22.3"; transcript_id "MER4B_9p22.3"; locus "MER4B_9p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0255"; repClass "LTR"; repEnd "1021"; repFamily "ERV1"; repLeft "-5737"; repStart "233"; chr9 rmsk exon 15373054 15373193 5461 + . gene_id "MER4B_9p22.3"; transcript_id "MER4B_9p22.3"; locus "MER4B_9p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0255"; repClass "LTR"; repEnd "1147"; repFamily "ERV1"; repLeft "-5611"; repStart "1022"; chr9 rmsk exon 15373232 15373640 1188 + . gene_id "MER4B_9p22.3"; transcript_id "MER4B_9p22.3"; locus "MER4B_9p22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0255"; repClass "LTR"; repEnd "1833"; repFamily "ERV1"; repLeft "-4925"; repStart "1321"; ### ERVLE_9p22.3a ### chr9 rmsk gene 15711817 15715259 . - . gene_id "ERVLE_9p22.3a"; transcript_id "ERVLE_9p22.3a"; locus "ERVLE_9p22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2250"; model_cov "3054"; model_pct "53.9"; chr9 rmsk exon 15711817 15711961 595 - . gene_id "ERVLE_9p22.3a"; transcript_id "ERVLE_9p22.3a"; locus "ERVLE_9p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2250"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "5124"; repStart "-389"; chr9 rmsk exon 15712428 15713737 3521 - . gene_id "ERVLE_9p22.3a"; transcript_id "ERVLE_9p22.3a"; locus "ERVLE_9p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2250"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "3125"; repStart "-1169"; chr9 rmsk exon 15713748 15715259 5580 - . gene_id "ERVLE_9p22.3a"; transcript_id "ERVLE_9p22.3a"; locus "ERVLE_9p22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2250"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "1185"; repStart "-2955"; ### ERV316A3_9p22.3 ### chr9 rmsk gene 15996998 15998695 . - . gene_id "ERV316A3_9p22.3"; transcript_id "ERV316A3_9p22.3"; locus "ERV316A3_9p22.3"; category "insert*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1701"; model_cov "700"; model_pct "13.4"; chr9 rmsk exon 15996998 15997488 1380 - . gene_id "ERV316A3_9p22.3"; transcript_id "ERV316A3_9p22.3"; locus "ERV316A3_9p22.3"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1701"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr9 rmsk exon 15997494 15998002 3906 - . gene_id "ERV316A3_9p22.3"; transcript_id "ERV316A3_9p22.3"; locus "ERV316A3_9p22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1701"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "4656"; repStart "-19"; chr9 rmsk exon 15998052 15998695 3906 - . gene_id "ERV316A3_9p22.3"; transcript_id "ERV316A3_9p22.3"; locus "ERV316A3_9p22.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1701"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "4507"; repStart "-19"; ### ERVLE_9p22.3b ### chr9 rmsk gene 16111273 16112772 . - . gene_id "ERVLE_9p22.3b"; transcript_id "ERVLE_9p22.3b"; locus "ERVLE_9p22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2251"; model_cov "1299"; model_pct "22.9"; chr9 rmsk exon 16111273 16111518 412 - . gene_id "ERVLE_9p22.3b"; transcript_id "ERVLE_9p22.3b"; locus "ERVLE_9p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2251"; repClass "LTR"; repEnd "4830"; repFamily "ERVL"; repLeft "4582"; repStart "-837"; chr9 rmsk exon 16111706 16111867 623 - . gene_id "ERVLE_9p22.3b"; transcript_id "ERVLE_9p22.3b"; locus "ERVLE_9p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2251"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "4373"; repStart "-1130"; chr9 rmsk exon 16111886 16112062 305 - . gene_id "ERVLE_9p22.3b"; transcript_id "ERVLE_9p22.3b"; locus "ERVLE_9p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2251"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "4237"; repStart "-1265"; chr9 rmsk exon 16112083 16112772 1357 - . gene_id "ERVLE_9p22.3b"; transcript_id "ERVLE_9p22.3b"; locus "ERVLE_9p22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2251"; repClass "LTR"; repEnd "3948"; repFamily "ERVL"; repLeft "3226"; repStart "-1719"; ### ERVLE_9p22.3c ### chr9 rmsk gene 16115616 16118399 . - . gene_id "ERVLE_9p22.3c"; transcript_id "ERVLE_9p22.3c"; locus "ERVLE_9p22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2252"; model_cov "1621"; model_pct "28.6"; chr9 rmsk exon 16115616 16115828 407 - . gene_id "ERVLE_9p22.3c"; transcript_id "ERVLE_9p22.3c"; locus "ERVLE_9p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2252"; repClass "LTR"; repEnd "3227"; repFamily "ERVL"; repLeft "3002"; repStart "-2440"; chr9 rmsk exon 16116180 16116285 269 - . gene_id "ERVLE_9p22.3c"; transcript_id "ERVLE_9p22.3c"; locus "ERVLE_9p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2252"; repClass "LTR"; repEnd "3017"; repFamily "ERVL"; repLeft "2922"; repStart "-2650"; chr9 rmsk exon 16116913 16117987 2010 - . gene_id "ERVLE_9p22.3c"; transcript_id "ERVLE_9p22.3c"; locus "ERVLE_9p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2252"; repClass "LTR"; repEnd "2921"; repFamily "ERVL"; repLeft "1783"; repStart "-2746"; chr9 rmsk exon 16118248 16118399 406 - . gene_id "ERVLE_9p22.3c"; transcript_id "ERVLE_9p22.3c"; locus "ERVLE_9p22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2252"; repClass "LTR"; repEnd "1728"; repFamily "ERVL"; repLeft "1565"; repStart "-3939"; ### ERV316A3_9p22.2 ### chr9 rmsk gene 17007471 17008023 . + . gene_id "ERV316A3_9p22.2"; transcript_id "ERV316A3_9p22.2"; locus "ERV316A3_9p22.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1703"; model_cov "536"; model_pct "10.3"; chr9 rmsk exon 17007471 17008023 1263 + . gene_id "ERV316A3_9p22.2"; transcript_id "ERV316A3_9p22.2"; locus "ERV316A3_9p22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1703"; repClass "LTR"; repEnd "3566"; repFamily "ERVL"; repLeft "-1660"; repStart "3030"; ### HERVL66_9p22.2 ### chr9 rmsk gene 17205490 17207343 . + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0014"; model_cov "1254"; model_pct "29.0"; chr9 rmsk exon 17205490 17205560 562 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "-3199"; repStart "1060"; chr9 rmsk exon 17205549 17205920 2764 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1423"; chr9 rmsk exon 17205903 17205977 520 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "2726"; repFamily "ERVL"; repLeft "-1603"; repStart "2652"; chr9 rmsk exon 17205972 17206261 1807 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-977"; repStart "3064"; chr9 rmsk exon 17206295 17206654 1572 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "3881"; chr9 rmsk exon 17206655 17207343 3835 + . gene_id "HERVL66_9p22.2"; transcript_id "HERVL66_9p22.2"; locus "HERVL66_9p22.2"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0014"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_9p22.2 ### chr9 rmsk gene 17403055 17404576 . + . gene_id "ERVLE_9p22.2"; transcript_id "ERVLE_9p22.2"; locus "ERVLE_9p22.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2253"; model_cov "1134"; model_pct "20.0"; chr9 rmsk exon 17403055 17403673 1014 + . gene_id "ERVLE_9p22.2"; transcript_id "ERVLE_9p22.2"; locus "ERVLE_9p22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2253"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "-1253"; repStart "3807"; chr9 rmsk exon 17404087 17404250 424 + . gene_id "ERVLE_9p22.2"; transcript_id "ERVLE_9p22.2"; locus "ERVLE_9p22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2253"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "-1064"; repStart "4431"; chr9 rmsk exon 17404240 17404576 602 + . gene_id "ERVLE_9p22.2"; transcript_id "ERVLE_9p22.2"; locus "ERVLE_9p22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2253"; repClass "LTR"; repEnd "4984"; repFamily "ERVL"; repLeft "-683"; repStart "4629"; ### ERVLB4_9p22.2 ### chr9 rmsk gene 17508846 17510797 . + . gene_id "ERVLB4_9p22.2"; transcript_id "ERVLB4_9p22.2"; locus "ERVLB4_9p22.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1008"; model_cov "1522"; model_pct "26.6"; chr9 rmsk exon 17508846 17510375 8908 + . gene_id "ERVLB4_9p22.2"; transcript_id "ERVLB4_9p22.2"; locus "ERVLB4_9p22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1008"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "-333"; repStart "3859"; chr9 rmsk exon 17510405 17510797 1825 + . gene_id "ERVLB4_9p22.2"; transcript_id "ERVLB4_9p22.2"; locus "ERVLB4_9p22.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1008"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### ERVLE_9p22.1 ### chr9 rmsk gene 19841678 19842732 . + . gene_id "ERVLE_9p22.1"; transcript_id "ERVLE_9p22.1"; locus "ERVLE_9p22.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2254"; model_cov "1079"; model_pct "19.0"; chr9 rmsk exon 19841678 19842732 4601 + . gene_id "ERVLE_9p22.1"; transcript_id "ERVLE_9p22.1"; locus "ERVLE_9p22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2254"; repClass "LTR"; repEnd "4907"; repFamily "ERVL"; repLeft "-760"; repStart "3828"; ### HERVL74_9p21.3 ### chr9 rmsk gene 20513947 20515367 . - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0058"; model_cov "1212"; model_pct "21.3"; chr9 rmsk exon 20513947 20514241 1247 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4833"; repStart "-544"; chr9 rmsk exon 20514270 20514413 510 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "4746"; repFamily "ERVL"; repLeft "4589"; repStart "-939"; chr9 rmsk exon 20514410 20514525 481 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "4015"; repFamily "ERVL"; repLeft "3897"; repStart "-1670"; chr9 rmsk exon 20514521 20514689 919 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "3485"; repStart "-2034"; chr9 rmsk exon 20514688 20514939 981 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "3325"; repFamily "ERVL"; repLeft "2975"; repStart "-2360"; chr9 rmsk exon 20515246 20515367 641 - . gene_id "HERVL74_9p21.3"; transcript_id "HERVL74_9p21.3"; locus "HERVL74_9p21.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0058"; repClass "LTR"; repEnd "2974"; repFamily "ERVL"; repLeft "2861"; repStart "-2711"; ### MER41_9p21.3 ### chr9 rmsk gene 20593281 20595047 . + . gene_id "MER41_9p21.3"; transcript_id "MER41_9p21.3"; locus "MER41_9p21.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0315"; model_cov "925"; model_pct "15.6"; chr9 rmsk exon 20593281 20593941 6103 + . gene_id "MER41_9p21.3"; transcript_id "MER41_9p21.3"; locus "MER41_9p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0315"; repClass "LTR"; repEnd "5692"; repFamily "ERV1"; repLeft "-254"; repStart "5020"; chr9 rmsk exon 20594241 20594490 6103 + . gene_id "MER41_9p21.3"; transcript_id "MER41_9p21.3"; locus "MER41_9p21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0315"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5693"; chr9 rmsk exon 20594491 20595047 3805 + . gene_id "MER41_9p21.3"; transcript_id "MER41_9p21.3"; locus "MER41_9p21.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0315"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HERVFRD_9p21.3a ### chr9 rmsk gene 21255271 21259405 . + . gene_id "HERVFRD_9p21.3a"; transcript_id "HERVFRD_9p21.3a"; locus "HERVFRD_9p21.3a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0112"; model_cov "3599"; model_pct "50.0"; chr9 rmsk exon 21255271 21255527 1420 + . gene_id "HERVFRD_9p21.3a"; transcript_id "HERVFRD_9p21.3a"; locus "HERVFRD_9p21.3a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0112"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "460"; chr9 rmsk exon 21255528 21257285 6561 + . gene_id "HERVFRD_9p21.3a"; transcript_id "HERVFRD_9p21.3a"; locus "HERVFRD_9p21.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0112"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "1"; chr9 rmsk exon 21257282 21258669 8287 + . gene_id "HERVFRD_9p21.3a"; transcript_id "HERVFRD_9p21.3a"; locus "HERVFRD_9p21.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0112"; repClass "LTR"; repEnd "4171"; repFamily "ERV1"; repLeft "-3034"; repStart "2789"; chr9 rmsk exon 21259042 21259405 8287 + . gene_id "HERVFRD_9p21.3a"; transcript_id "HERVFRD_9p21.3a"; locus "HERVFRD_9p21.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0112"; repClass "LTR"; repEnd "4541"; repFamily "ERV1"; repLeft "-2664"; repStart "4172"; ### MER34B_9p21.3a ### chr9 rmsk gene 21378993 21379976 . - . gene_id "MER34B_9p21.3a"; transcript_id "MER34B_9p21.3a"; locus "MER34B_9p21.3a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0174"; model_cov "1710"; model_pct "31.9"; chr9 rmsk exon 21378993 21379976 2082 - . gene_id "MER34B_9p21.3a"; transcript_id "MER34B_9p21.3a"; locus "MER34B_9p21.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0174"; repClass "LTR"; repEnd "1160"; repFamily "ERV1"; repLeft "-550"; repStart "-4196"; ### HERVH_9p21.3a ### chr9 rmsk gene 21487323 21491080 . - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0743"; model_cov "3269"; model_pct "42.4"; chr9 rmsk exon 21487323 21487736 3039 - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0743"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr9 rmsk exon 21487737 21488110 2408 - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0743"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr9 rmsk exon 21488109 21488401 1201 - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0743"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5569"; repStart "-1894"; chr9 rmsk exon 21488396 21491044 18000 - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0743"; repClass "LTR"; repEnd "2629"; repFamily "ERV1"; repLeft "1"; repStart "-5084"; chr9 rmsk exon 21491045 21491080 328 - . gene_id "HERVH_9p21.3a"; transcript_id "HERVH_9p21.3a"; locus "HERVH_9p21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0743"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "415"; repStart "0"; ### HERVL_9p21.3a ### chr9 rmsk gene 21846888 21852044 . + . gene_id "HERVL_9p21.3a"; transcript_id "HERVL_9p21.3a"; locus "HERVL_9p21.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0793"; model_cov "4214"; model_pct "74.5"; chr9 rmsk exon 21846888 21847326 3615 + . gene_id "HERVL_9p21.3a"; transcript_id "HERVL_9p21.3a"; locus "HERVL_9p21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0793"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 21847327 21850874 25853 + . gene_id "HERVL_9p21.3a"; transcript_id "HERVL_9p21.3a"; locus "HERVL_9p21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0793"; repClass "LTR"; repEnd "3502"; repFamily "ERVL"; repLeft "-2152"; repStart "1"; chr9 rmsk exon 21850904 21851616 5455 + . gene_id "HERVL_9p21.3a"; transcript_id "HERVL_9p21.3a"; locus "HERVL_9p21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0793"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "-12"; repStart "4929"; chr9 rmsk exon 21851618 21852044 3386 + . gene_id "HERVL_9p21.3a"; transcript_id "HERVL_9p21.3a"; locus "HERVL_9p21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0793"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFRD_9p21.3b ### chr9 rmsk gene 21921892 21931935 . + . gene_id "HERVFRD_9p21.3b"; transcript_id "HERVFRD_9p21.3b"; locus "HERVFRD_9p21.3b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0113"; model_cov "6748"; model_pct "93.7"; chr9 rmsk exon 21921892 21922597 3892 + . gene_id "HERVFRD_9p21.3b"; transcript_id "HERVFRD_9p21.3b"; locus "HERVFRD_9p21.3b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0113"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr9 rmsk exon 21922598 21928866 21619 + . gene_id "HERVFRD_9p21.3b"; transcript_id "HERVFRD_9p21.3b"; locus "HERVFRD_9p21.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0113"; repClass "LTR"; repEnd "6310"; repFamily "ERV1"; repLeft "-895"; repStart "673"; chr9 rmsk exon 21930151 21931320 7668 + . gene_id "HERVFRD_9p21.3b"; transcript_id "HERVFRD_9p21.3b"; locus "HERVFRD_9p21.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0113"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6086"; chr9 rmsk exon 21931321 21931935 1732 + . gene_id "HERVFRD_9p21.3b"; transcript_id "HERVFRD_9p21.3b"; locus "HERVFRD_9p21.3b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0113"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "-24"; repStart "1"; ### MER34B_9p21.3b ### chr9 rmsk gene 21933111 21940551 . + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0175"; model_cov "3308"; model_pct "61.8"; chr9 rmsk exon 21933111 21933190 380 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "190"; repFamily "ERV1"; repLeft "-5166"; repStart "106"; chr9 rmsk exon 21933242 21933453 761 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34C"; geneRegion "ltr"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "296"; repFamily "ERV1"; repLeft "-255"; repStart "61"; chr9 rmsk exon 21933459 21933961 1974 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "1644"; repFamily "ERV1"; repLeft "-3712"; repStart "1135"; chr9 rmsk exon 21934395 21934697 1974 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "1924"; repFamily "ERV1"; repLeft "-3432"; repStart "1645"; chr9 rmsk exon 21934999 21935173 1974 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "2083"; repFamily "ERV1"; repLeft "-3273"; repStart "1925"; chr9 rmsk exon 21936430 21937070 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "2716"; repFamily "ERV1"; repLeft "-2640"; repStart "2385"; chr9 rmsk exon 21937349 21937857 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "3211"; repFamily "ERV1"; repLeft "-2145"; repStart "2717"; chr9 rmsk exon 21938465 21938948 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "3730"; repFamily "ERV1"; repLeft "-1626"; repStart "3212"; chr9 rmsk exon 21939295 21939581 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "3996"; repFamily "ERV1"; repLeft "-1360"; repStart "3731"; chr9 rmsk exon 21939896 21939999 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "4273"; repFamily "ERV1"; repLeft "-1083"; repStart "4149"; chr9 rmsk exon 21940099 21940551 4379 + . gene_id "MER34B_9p21.3b"; transcript_id "MER34B_9p21.3b"; locus "MER34B_9p21.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0175"; repClass "LTR"; repEnd "4820"; repFamily "ERV1"; repLeft "-536"; repStart "4274"; ### ERVLB4_9p21.3a ### chr9 rmsk gene 22321644 22323283 . + . gene_id "ERVLB4_9p21.3a"; transcript_id "ERVLB4_9p21.3a"; locus "ERVLB4_9p21.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1010"; model_cov "675"; model_pct "11.8"; chr9 rmsk exon 22321644 22322051 1169 + . gene_id "ERVLB4_9p21.3a"; transcript_id "ERVLB4_9p21.3a"; locus "ERVLB4_9p21.3a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1010"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 22322053 22322563 2118 + . gene_id "ERVLB4_9p21.3a"; transcript_id "ERVLB4_9p21.3a"; locus "ERVLB4_9p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1010"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-5197"; repStart "2"; chr9 rmsk exon 22323122 22323283 570 + . gene_id "ERVLB4_9p21.3a"; transcript_id "ERVLB4_9p21.3a"; locus "ERVLB4_9p21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1010"; repClass "LTR"; repEnd "752"; repFamily "ERVL"; repLeft "-4962"; repStart "592"; ### ERVLE_9p21.3a ### chr9 rmsk gene 22456354 22460565 . - . gene_id "ERVLE_9p21.3a"; transcript_id "ERVLE_9p21.3a"; locus "ERVLE_9p21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2256"; model_cov "4429"; model_pct "78.2"; chr9 rmsk exon 22456354 22460565 13112 - . gene_id "ERVLE_9p21.3a"; transcript_id "ERVLE_9p21.3a"; locus "ERVLE_9p21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2256"; repClass "LTR"; repEnd "5600"; repFamily "ERVL"; repLeft "1171"; repStart "-67"; ### HERVH_9p21.3b ### chr9 rmsk gene 22658527 22664062 . - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0744"; model_cov "5002"; model_pct "64.9"; chr9 rmsk exon 22658527 22658926 2472 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 22658927 22659302 2274 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr9 rmsk exon 22659303 22659518 1343 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 22659520 22660090 3678 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4575"; repStart "-2564"; chr9 rmsk exon 22660088 22660270 1317 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4488"; repStart "-3043"; chr9 rmsk exon 22660273 22660767 3533 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr9 rmsk exon 22660758 22660906 868 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3139"; repStart "-4423"; chr9 rmsk exon 22660900 22663657 15209 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr9 rmsk exon 22663660 22664062 2383 - . gene_id "HERVH_9p21.3b"; transcript_id "HERVH_9p21.3b"; locus "HERVH_9p21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0744"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_9p21.3 ### chr9 rmsk gene 22690572 22693784 . - . gene_id "ERV316A3_9p21.3"; transcript_id "ERV316A3_9p21.3"; locus "ERV316A3_9p21.3"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1705"; model_cov "1885"; model_pct "36.1"; chr9 rmsk exon 22690572 22690979 1515 - . gene_id "ERV316A3_9p21.3"; transcript_id "ERV316A3_9p21.3"; locus "ERV316A3_9p21.3"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1705"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "27"; repStart "-3"; chr9 rmsk exon 22691241 22691984 2151 - . gene_id "ERV316A3_9p21.3"; transcript_id "ERV316A3_9p21.3"; locus "ERV316A3_9p21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1705"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "4177"; repStart "-275"; chr9 rmsk exon 22692001 22693141 2453 - . gene_id "ERV316A3_9p21.3"; transcript_id "ERV316A3_9p21.3"; locus "ERV316A3_9p21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1705"; repClass "LTR"; repEnd "4079"; repFamily "ERVL"; repLeft "2968"; repStart "-1147"; chr9 rmsk exon 22693426 22693784 751 - . gene_id "ERV316A3_9p21.3"; transcript_id "ERV316A3_9p21.3"; locus "ERV316A3_9p21.3"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1705"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "3"; repStart "-79"; ### HERVL_9p21.3b ### chr9 rmsk gene 22830491 22834729 . + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0794"; model_cov "3327"; model_pct "58.8"; chr9 rmsk exon 22830491 22830888 2299 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-32"; repStart "9"; chr9 rmsk exon 22830930 22830960 2299 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "422"; chr9 rmsk exon 22830961 22832685 20361 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "-3930"; repStart "1"; chr9 rmsk exon 22833024 22834616 17001 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "-2325"; repStart "1725"; chr9 rmsk exon 22834618 22834638 237 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "672"; repFamily "ERVL"; repLeft "-45"; repStart "652"; chr9 rmsk exon 22834690 22834729 237 + . gene_id "HERVL_9p21.3b"; transcript_id "HERVL_9p21.3b"; locus "HERVL_9p21.3b"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0794"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-8"; repStart "673"; ### ERVLB4_9p21.3b ### chr9 rmsk gene 22889379 22892497 . + . gene_id "ERVLB4_9p21.3b"; transcript_id "ERVLB4_9p21.3b"; locus "ERVLB4_9p21.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1011"; model_cov "1711"; model_pct "29.9"; chr9 rmsk exon 22889379 22889538 938 + . gene_id "ERVLB4_9p21.3b"; transcript_id "ERVLB4_9p21.3b"; locus "ERVLB4_9p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1011"; repClass "LTR"; repEnd "163"; repFamily "ERVL"; repLeft "-5551"; repStart "2"; chr9 rmsk exon 22890455 22891350 5064 + . gene_id "ERVLB4_9p21.3b"; transcript_id "ERVLB4_9p21.3b"; locus "ERVLB4_9p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1011"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "-1045"; repStart "3753"; chr9 rmsk exon 22891338 22891900 2154 + . gene_id "ERVLB4_9p21.3b"; transcript_id "ERVLB4_9p21.3b"; locus "ERVLB4_9p21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1011"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5080"; chr9 rmsk exon 22891901 22892497 2817 + . gene_id "ERVLB4_9p21.3b"; transcript_id "ERVLB4_9p21.3b"; locus "ERVLB4_9p21.3b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1011"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_9p21.3b ### chr9 rmsk gene 22981507 22982376 . - . gene_id "ERVLE_9p21.3b"; transcript_id "ERVLE_9p21.3b"; locus "ERVLE_9p21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2257"; model_cov "922"; model_pct "16.3"; chr9 rmsk exon 22981507 22982376 3202 - . gene_id "ERVLE_9p21.3b"; transcript_id "ERVLE_9p21.3b"; locus "ERVLE_9p21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2257"; repClass "LTR"; repEnd "4864"; repFamily "ERVL"; repLeft "3942"; repStart "-803"; ### HERV9_9p21.3 ### chr9 rmsk gene 23916281 23926439 . - . gene_id "HERV9_9p21.3"; transcript_id "HERV9_9p21.3"; locus "HERV9_9p21.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0117"; model_cov "8402"; model_pct "99.6"; chr9 rmsk exon 23916281 23917009 4731 - . gene_id "HERV9_9p21.3"; transcript_id "HERV9_9p21.3"; locus "HERV9_9p21.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0117"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 23917010 23925409 68550 - . gene_id "HERV9_9p21.3"; transcript_id "HERV9_9p21.3"; locus "HERV9_9p21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0117"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "34"; repStart "0"; chr9 rmsk exon 23925420 23926439 5311 - . gene_id "HERV9_9p21.3"; transcript_id "HERV9_9p21.3"; locus "HERV9_9p21.3"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0117"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "363"; repStart "0"; ### MER61_9p21.3 ### chr9 rmsk gene 23940967 23946863 . - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0240"; model_cov "5686"; model_pct "100.0"; chr9 rmsk exon 23940967 23941338 2104 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0240"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "114"; repStart "-6"; chr9 rmsk exon 23941381 23941709 7338 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0240"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4824"; repStart "0"; chr9 rmsk exon 23941742 23942564 7338 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0240"; repClass "LTR"; repEnd "4823"; repFamily "ERV1"; repLeft "4012"; repStart "-394"; chr9 rmsk exon 23942553 23942671 10735 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0240"; repClass "LTR"; repEnd "3901"; repFamily "ERV1"; repLeft "3789"; repStart "-1316"; chr9 rmsk exon 23942978 23946170 10735 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0240"; repClass "LTR"; repEnd "2444"; repFamily "ERV1"; repLeft "-1788"; repStart "-2773"; chr9 rmsk exon 23946332 23946468 539 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0240"; repClass "LTR"; repEnd "140"; repFamily "ERV1"; repLeft "2"; repStart "-5077"; chr9 rmsk exon 23946469 23946863 2158 - . gene_id "MER61_9p21.3"; transcript_id "MER61_9p21.3"; locus "MER61_9p21.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0240"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "106"; repStart "0"; ### ERVLB4_9p21.3c ### chr9 rmsk gene 24445476 24449212 . - . gene_id "ERVLB4_9p21.3c"; transcript_id "ERVLB4_9p21.3c"; locus "ERVLB4_9p21.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1014"; model_cov "3823"; model_pct "66.9"; chr9 rmsk exon 24445476 24449212 20093 - . gene_id "ERVLB4_9p21.3c"; transcript_id "ERVLB4_9p21.3c"; locus "ERVLB4_9p21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1014"; repClass "LTR"; repEnd "4245"; repFamily "ERVL"; repLeft "422"; repStart "-1469"; ### ERVLE_9p21.3c ### chr9 rmsk gene 24770169 24772610 . - . gene_id "ERVLE_9p21.3c"; transcript_id "ERVLE_9p21.3c"; locus "ERVLE_9p21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2258"; model_cov "2514"; model_pct "44.4"; chr9 rmsk exon 24770169 24771214 3961 - . gene_id "ERVLE_9p21.3c"; transcript_id "ERVLE_9p21.3c"; locus "ERVLE_9p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2258"; repClass "LTR"; repEnd "3855"; repFamily "ERVL"; repLeft "2792"; repStart "-1812"; chr9 rmsk exon 24771213 24772610 3413 - . gene_id "ERVLE_9p21.3c"; transcript_id "ERVLE_9p21.3c"; locus "ERVLE_9p21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2258"; repClass "LTR"; repEnd "1453"; repFamily "ERVL"; repLeft "2"; repStart "-4214"; ### HERVL_9p21.3c ### chr9 rmsk gene 25125775 25127237 . - . gene_id "HERVL_9p21.3c"; transcript_id "HERVL_9p21.3c"; locus "HERVL_9p21.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0795"; model_cov "1046"; model_pct "18.5"; chr9 rmsk exon 25125775 25126813 8023 - . gene_id "HERVL_9p21.3c"; transcript_id "HERVL_9p21.3c"; locus "HERVL_9p21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0795"; repClass "LTR"; repEnd "1048"; repFamily "ERVL"; repLeft "2"; repStart "-4606"; chr9 rmsk exon 25126815 25127237 2990 - . gene_id "HERVL_9p21.3c"; transcript_id "HERVL_9p21.3c"; locus "HERVL_9p21.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0795"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_9p21.3c ### chr9 rmsk gene 25288176 25294101 . + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0745"; model_cov "5816"; model_pct "75.4"; chr9 rmsk exon 25288176 25288591 2571 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr9 rmsk exon 25288594 25291065 15027 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "2983"; repFamily "ERV1"; repLeft "-4730"; repStart "1"; chr9 rmsk exon 25291076 25293149 8363 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4199"; chr9 rmsk exon 25293151 25293366 1239 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 25293365 25293743 2370 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 25293744 25294101 2106 + . gene_id "HERVH_9p21.3c"; transcript_id "HERVH_9p21.3c"; locus "HERVH_9p21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0745"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_9p21.2a ### chr9 rmsk gene 25626486 25627729 . + . gene_id "HERVL_9p21.2a"; transcript_id "HERVL_9p21.2a"; locus "HERVL_9p21.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0796"; model_cov "836"; model_pct "14.8"; chr9 rmsk exon 25626486 25627308 6294 + . gene_id "HERVL_9p21.2a"; transcript_id "HERVL_9p21.2a"; locus "HERVL_9p21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0796"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4818"; chr9 rmsk exon 25627309 25627729 3118 + . gene_id "HERVL_9p21.2a"; transcript_id "HERVL_9p21.2a"; locus "HERVL_9p21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0796"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; ### HERVH_9p21.2a ### chr9 rmsk gene 25668929 25675217 . + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0746"; model_cov "5784"; model_pct "75.0"; chr9 rmsk exon 25668929 25669329 2464 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 25669333 25672462 19719 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "2"; chr9 rmsk exon 25672453 25674176 8334 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr9 rmsk exon 25674178 25674393 1357 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 25674392 25674764 2279 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 25674765 25675217 2741 + . gene_id "HERVH_9p21.2a"; transcript_id "HERVH_9p21.2a"; locus "HERVH_9p21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0746"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_9p21.2a ### chr9 rmsk gene 25819416 25821317 . - . gene_id "ERVLE_9p21.2a"; transcript_id "ERVLE_9p21.2a"; locus "ERVLE_9p21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2259"; model_cov "1625"; model_pct "28.7"; chr9 rmsk exon 25819416 25819950 3621 - . gene_id "ERVLE_9p21.2a"; transcript_id "ERVLE_9p21.2a"; locus "ERVLE_9p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2259"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "5108"; repStart "-7"; chr9 rmsk exon 25820297 25821317 3621 - . gene_id "ERVLE_9p21.2a"; transcript_id "ERVLE_9p21.2a"; locus "ERVLE_9p21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2259"; repClass "LTR"; repEnd "5107"; repFamily "ERVL"; repLeft "4034"; repStart "-560"; ### ERVLE_9p21.2b ### chr9 rmsk gene 25833507 25834222 . - . gene_id "ERVLE_9p21.2b"; transcript_id "ERVLE_9p21.2b"; locus "ERVLE_9p21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2261"; model_cov "719"; model_pct "12.7"; chr9 rmsk exon 25833507 25834222 1524 - . gene_id "ERVLE_9p21.2b"; transcript_id "ERVLE_9p21.2b"; locus "ERVLE_9p21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2261"; repClass "LTR"; repEnd "3403"; repFamily "ERVL"; repLeft "2684"; repStart "-2264"; ### MER4_9p21.2 ### chr9 rmsk gene 25847555 25854537 . + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0449"; model_cov "8123"; model_pct "100.0"; chr9 rmsk exon 25847555 25848002 3127 + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0449"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 25848006 25850338 10788 + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0449"; repClass "LTR"; repEnd "2634"; repFamily "ERV1"; repLeft "-3964"; repStart "1"; chr9 rmsk exon 25850578 25851513 10788 + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0449"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2905"; repStart "2635"; chr9 rmsk exon 25851497 25854101 15023 + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0449"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "2166"; chr9 rmsk exon 25854105 25854537 3000 + . gene_id "MER4_9p21.2"; transcript_id "MER4_9p21.2"; locus "MER4_9p21.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0449"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "8"; ### HUERSP3B_9p21.2 ### chr9 rmsk gene 25959679 25965722 . - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0078"; model_cov "4184"; model_pct "56.4"; chr9 rmsk exon 25959679 25960252 3603 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr9 rmsk exon 25960255 25960450 1316 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "7219"; repStart "-1"; chr9 rmsk exon 25960680 25961504 5590 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "6112"; repStart "-473"; chr9 rmsk exon 25961511 25962049 3863 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "3609"; repFamily "ERV1"; repLeft "3073"; repStart "-3809"; chr9 rmsk exon 25962468 25963899 13909 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "2635"; repFamily "ERV1"; repLeft "1192"; repStart "-4783"; chr9 rmsk exon 25963937 25965119 13909 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "1191"; repFamily "ERV1"; repLeft "17"; repStart "-6227"; chr9 rmsk exon 25965137 25965722 3612 - . gene_id "HUERSP3B_9p21.2"; transcript_id "HUERSP3B_9p21.2"; locus "HUERSP3B_9p21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0078"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_9p21.2b ### chr9 rmsk gene 25994640 26000000 . + . gene_id "HERVH_9p21.2b"; transcript_id "HERVH_9p21.2b"; locus "HERVH_9p21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0747"; model_cov "7117"; model_pct "92.3"; chr9 rmsk exon 25994640 25995063 1640 + . gene_id "HERVH_9p21.2b"; transcript_id "HERVH_9p21.2b"; locus "HERVH_9p21.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0747"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-17"; repStart "4"; chr9 rmsk exon 25995548 25999574 6129 + . gene_id "HERVH_9p21.2b"; transcript_id "HERVH_9p21.2b"; locus "HERVH_9p21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0747"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "596"; chr9 rmsk exon 25999583 26000000 1528 + . gene_id "HERVH_9p21.2b"; transcript_id "HERVH_9p21.2b"; locus "HERVH_9p21.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0747"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-30"; repStart "4"; ### HERVL_9p21.2b ### chr9 rmsk gene 26105098 26111016 . + . gene_id "HERVL_9p21.2b"; transcript_id "HERVL_9p21.2b"; locus "HERVL_9p21.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0798"; model_cov "5653"; model_pct "100.0"; chr9 rmsk exon 26105098 26110710 42755 + . gene_id "HERVL_9p21.2b"; transcript_id "HERVL_9p21.2b"; locus "HERVL_9p21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0798"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 26110711 26111016 2179 + . gene_id "HERVL_9p21.2b"; transcript_id "HERVL_9p21.2b"; locus "HERVL_9p21.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0798"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "-140"; repStart "1"; ### HERVIP10F_9p21.2a ### chr9 rmsk gene 26970780 26972490 . - . gene_id "HERVIP10F_9p21.2a"; transcript_id "HERVIP10F_9p21.2a"; locus "HERVIP10F_9p21.2a"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0062"; model_cov "1698"; model_pct "21.9"; chr9 rmsk exon 26970780 26972490 25320 - . gene_id "HERVIP10F_9p21.2a"; transcript_id "HERVIP10F_9p21.2a"; locus "HERVIP10F_9p21.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0062"; repClass "LTR"; repEnd "5349"; repFamily "ERV1"; repLeft "3651"; repStart "-2388"; ### HERVIP10F_9p21.2b ### chr9 rmsk gene 26972599 26976760 . - . gene_id "HERVIP10F_9p21.2b"; transcript_id "HERVIP10F_9p21.2b"; locus "HERVIP10F_9p21.2b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0063"; model_cov "3648"; model_pct "47.2"; chr9 rmsk exon 26972599 26976270 25320 - . gene_id "HERVIP10F_9p21.2b"; transcript_id "HERVIP10F_9p21.2b"; locus "HERVIP10F_9p21.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0063"; repClass "LTR"; repEnd "5349"; repFamily "ERV1"; repLeft "1701"; repStart "-2388"; chr9 rmsk exon 26976273 26976760 2057 - . gene_id "HERVIP10F_9p21.2b"; transcript_id "HERVIP10F_9p21.2b"; locus "HERVIP10F_9p21.2b"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVIP10F-int_0063"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_9p21.2 ### chr9 rmsk gene 27305480 27307073 . - . gene_id "ERV316A3_9p21.2"; transcript_id "ERV316A3_9p21.2"; locus "ERV316A3_9p21.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1706"; model_cov "642"; model_pct "12.3"; chr9 rmsk exon 27305480 27305955 971 - . gene_id "ERV316A3_9p21.2"; transcript_id "ERV316A3_9p21.2"; locus "ERV316A3_9p21.2"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1706"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 27306251 27306495 672 - . gene_id "ERV316A3_9p21.2"; transcript_id "ERV316A3_9p21.2"; locus "ERV316A3_9p21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1706"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "4589"; repStart "-391"; chr9 rmsk exon 27306702 27307073 407 - . gene_id "ERV316A3_9p21.2"; transcript_id "ERV316A3_9p21.2"; locus "ERV316A3_9p21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1706"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "419"; repStart "-4411"; ### HERVL_9p21.2c ### chr9 rmsk gene 27637123 27643901 . + . gene_id "HERVL_9p21.2c"; transcript_id "HERVL_9p21.2c"; locus "HERVL_9p21.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0799"; model_cov "5653"; model_pct "100.0"; chr9 rmsk exon 27637123 27637578 3263 + . gene_id "HERVL_9p21.2c"; transcript_id "HERVL_9p21.2c"; locus "HERVL_9p21.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0799"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 27637579 27643193 42488 + . gene_id "HERVL_9p21.2c"; transcript_id "HERVL_9p21.2c"; locus "HERVL_9p21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0799"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 27643196 27643595 3023 + . gene_id "HERVL_9p21.2c"; transcript_id "HERVL_9p21.2c"; locus "HERVL_9p21.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0799"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "3"; chr9 rmsk exon 27643854 27643901 354 + . gene_id "HERVL_9p21.2c"; transcript_id "HERVL_9p21.2c"; locus "HERVL_9p21.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0799"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "397"; ### LTR46_9p21.2 ### chr9 rmsk gene 27805167 27809633 . - . gene_id "LTR46_9p21.2"; transcript_id "LTR46_9p21.2"; locus "LTR46_9p21.2"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0011"; model_cov "4028"; model_pct "57.7"; chr9 rmsk exon 27805167 27805624 3545 - . gene_id "LTR46_9p21.2"; transcript_id "LTR46_9p21.2"; locus "LTR46_9p21.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0011"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 27805625 27809633 25300 - . gene_id "LTR46_9p21.2"; transcript_id "LTR46_9p21.2"; locus "LTR46_9p21.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0011"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "2957"; repStart "0"; ### ERV316A3_9p21.1a ### chr9 rmsk gene 28375244 28376757 . + . gene_id "ERV316A3_9p21.1a"; transcript_id "ERV316A3_9p21.1a"; locus "ERV316A3_9p21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1707"; model_cov "1156"; model_pct "22.1"; chr9 rmsk exon 28375244 28376407 2055 + . gene_id "ERV316A3_9p21.1a"; transcript_id "ERV316A3_9p21.1a"; locus "ERV316A3_9p21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1707"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-51"; repStart "4019"; chr9 rmsk exon 28376454 28376681 565 + . gene_id "ERV316A3_9p21.1a"; transcript_id "ERV316A3_9p21.1a"; locus "ERV316A3_9p21.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1707"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "-191"; repStart "20"; chr9 rmsk exon 28376686 28376757 392 + . gene_id "ERV316A3_9p21.1a"; transcript_id "ERV316A3_9p21.1a"; locus "ERV316A3_9p21.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1707"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "363"; ### HERVL_9p21.1a ### chr9 rmsk gene 28510729 28513083 . - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0800"; model_cov "1350"; model_pct "23.9"; chr9 rmsk exon 28510729 28511176 2587 - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0800"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr9 rmsk exon 28511195 28512529 10406 - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0800"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "3064"; repStart "-1240"; chr9 rmsk exon 28512545 28512593 2676 - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0800"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr9 rmsk exon 28512638 28512669 2676 - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0800"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "387"; repStart "-48"; chr9 rmsk exon 28512695 28513083 2676 - . gene_id "HERVL_9p21.1a"; transcript_id "HERVL_9p21.1a"; locus "HERVL_9p21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0800"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "3"; repStart "-58"; ### HERV4_9p21.1 ### chr9 rmsk gene 29130143 29131215 . + . gene_id "HERV4_9p21.1"; transcript_id "HERV4_9p21.1"; locus "HERV4_9p21.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0082"; model_cov "1085"; model_pct "16.6"; chr9 rmsk exon 29130143 29131215 6880 + . gene_id "HERV4_9p21.1"; transcript_id "HERV4_9p21.1"; locus "HERV4_9p21.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0082"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "-275"; repStart "5179"; ### ERVLE_9p21.1 ### chr9 rmsk gene 29243978 29247454 . + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_2263"; model_cov "1869"; model_pct "33.0"; chr9 rmsk exon 29243978 29244625 588 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr9 rmsk exon 29244696 29245034 1872 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-5276"; repStart "51"; chr9 rmsk exon 29245069 29245351 1872 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "669"; repFamily "ERVL"; repLeft "-4998"; repStart "392"; chr9 rmsk exon 29245452 29246476 3709 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "4177"; repFamily "ERVL"; repLeft "-1490"; repStart "3137"; chr9 rmsk exon 29246493 29246679 504 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "-7"; repStart "5448"; chr9 rmsk exon 29247021 29247454 909 + . gene_id "ERVLE_9p21.1"; transcript_id "ERVLE_9p21.1"; locus "ERVLE_9p21.1"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2263"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "179"; ### ERV316A3_9p21.1b ### chr9 rmsk gene 29256595 29262339 . - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1708"; model_cov "4536"; model_pct "86.8"; chr9 rmsk exon 29256595 29257005 817 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "5"; repStart "-2"; chr9 rmsk exon 29257175 29259421 5534 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "4686"; repFamily "ERVL"; repLeft "2501"; repStart "-540"; chr9 rmsk exon 29259455 29260046 1433 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1560"; repStart "-3060"; chr9 rmsk exon 29260069 29261374 3461 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "1996"; repFamily "ERVL"; repLeft "655"; repStart "-3230"; chr9 rmsk exon 29261403 29261807 3461 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "654"; repFamily "ERVL"; repLeft "250"; repStart "-4572"; chr9 rmsk exon 29262040 29262179 253 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "251"; repStart "-21"; chr9 rmsk exon 29262237 29262339 244 - . gene_id "ERV316A3_9p21.1b"; transcript_id "ERV316A3_9p21.1b"; locus "ERV316A3_9p21.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1708"; repClass "LTR"; repEnd "129"; repFamily "ERVL"; repLeft "18"; repStart "-322"; ### HARLEQUIN_9p21.1 ### chr9 rmsk gene 29377118 29384677 . + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0117"; model_cov "6681"; model_pct "96.9"; chr9 rmsk exon 29377118 29377317 3091 + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0117"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "-231"; repStart "1"; chr9 rmsk exon 29377356 29377585 3091 + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0117"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-1"; repStart "233"; chr9 rmsk exon 29377586 29382447 37026 + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0117"; repClass "LTR"; repEnd "4895"; repFamily "ERV1"; repLeft "-2001"; repStart "1"; chr9 rmsk exon 29382436 29384218 14092 + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0117"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5109"; chr9 rmsk exon 29384219 29384677 3590 + . gene_id "HARLEQUIN_9p21.1"; transcript_id "HARLEQUIN_9p21.1"; locus "HARLEQUIN_9p21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0117"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_9p21.1a ### chr9 rmsk gene 29511499 29513889 . + . gene_id "ERVLB4_9p21.1a"; transcript_id "ERVLB4_9p21.1a"; locus "ERVLB4_9p21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1018"; model_cov "1660"; model_pct "29.1"; chr9 rmsk exon 29511499 29512152 3568 + . gene_id "ERVLB4_9p21.1a"; transcript_id "ERVLB4_9p21.1a"; locus "ERVLB4_9p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1018"; repClass "LTR"; repEnd "1021"; repFamily "ERVL"; repLeft "-4693"; repStart "383"; chr9 rmsk exon 29512170 29512314 5295 + . gene_id "ERVLB4_9p21.1a"; transcript_id "ERVLB4_9p21.1a"; locus "ERVLB4_9p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1018"; repClass "LTR"; repEnd "4829"; repFamily "ERVL"; repLeft "-885"; repStart "4684"; chr9 rmsk exon 29512618 29513513 5295 + . gene_id "ERVLB4_9p21.1a"; transcript_id "ERVLB4_9p21.1a"; locus "ERVLB4_9p21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1018"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "4830"; chr9 rmsk exon 29513521 29513889 1189 + . gene_id "ERVLB4_9p21.1a"; transcript_id "ERVLB4_9p21.1a"; locus "ERVLB4_9p21.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1018"; repClass "LTR"; repEnd "503"; repFamily "ERVL"; repLeft "-53"; repStart "1"; ### MER41_9p21.1a ### chr9 rmsk gene 29547094 29554598 . + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0316"; model_cov "5939"; model_pct "99.9"; chr9 rmsk exon 29547094 29547649 4222 + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0316"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 29547734 29549020 21384 + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0316"; repClass "LTR"; repEnd "1410"; repFamily "ERV1"; repLeft "-4536"; repStart "1"; chr9 rmsk exon 29549319 29549424 21384 + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0316"; repClass "LTR"; repEnd "1502"; repFamily "ERV1"; repLeft "-4444"; repStart "1411"; chr9 rmsk exon 29549739 29554044 21384 + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0316"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "-4"; repStart "1503"; chr9 rmsk exon 29554047 29554598 4147 + . gene_id "MER41_9p21.1a"; transcript_id "MER41_9p21.1a"; locus "MER41_9p21.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0316"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML1_9p21.1a ### chr9 rmsk gene 29655117 29656339 . - . gene_id "HML1_9p21.1a"; transcript_id "HML1_9p21.1a"; locus "HML1_9p21.1a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0061"; model_cov "882"; model_pct "14.5"; chr9 rmsk exon 29655117 29655519 1825 - . gene_id "HML1_9p21.1a"; transcript_id "HML1_9p21.1a"; locus "HML1_9p21.1a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0061"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr9 rmsk exon 29655523 29655639 604 - . gene_id "HML1_9p21.1a"; transcript_id "HML1_9p21.1a"; locus "HML1_9p21.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0061"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr9 rmsk exon 29655702 29655881 1289 - . gene_id "HML1_9p21.1a"; transcript_id "HML1_9p21.1a"; locus "HML1_9p21.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0061"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5715"; repStart "-199"; chr9 rmsk exon 29655884 29656339 1597 - . gene_id "HML1_9p21.1a"; transcript_id "HML1_9p21.1a"; locus "HML1_9p21.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0061"; repClass "LTR"; repEnd "5600"; repFamily "ERVK"; repLeft "5036"; repStart "-496"; ### HERVW_9p21.1a ### chr9 rmsk gene 29656327 29658927 . - . gene_id "HERVW_9p21.1a"; transcript_id "HERVW_9p21.1a"; locus "HERVW_9p21.1a"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0190"; model_cov "2661"; model_pct "30.8"; chr9 rmsk exon 29656327 29656375 362 - . gene_id "HERVW_9p21.1a"; transcript_id "HERVW_9p21.1a"; locus "HERVW_9p21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0190"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "433"; repStart "-8145"; chr9 rmsk exon 29656375 29656519 1089 - . gene_id "HERVW_9p21.1a"; transcript_id "HERVW_9p21.1a"; locus "HERVW_9p21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0190"; repClass "LTR"; repEnd "5553"; repFamily "ERV1"; repLeft "5406"; repStart "-3073"; chr9 rmsk exon 29656500 29657802 9885 - . gene_id "HERVW_9p21.1a"; transcript_id "HERVW_9p21.1a"; locus "HERVW_9p21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0190"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr9 rmsk exon 29657795 29658927 8432 - . gene_id "HERVW_9p21.1a"; transcript_id "HERVW_9p21.1a"; locus "HERVW_9p21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0190"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "865"; repStart "-6619"; ### HML1_9p21.1b ### chr9 rmsk gene 29658988 29660160 . - . gene_id "HML1_9p21.1b"; transcript_id "HML1_9p21.1b"; locus "HML1_9p21.1b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0062"; model_cov "783"; model_pct "12.8"; chr9 rmsk exon 29658988 29659743 4899 - . gene_id "HML1_9p21.1b"; transcript_id "HML1_9p21.1b"; locus "HML1_9p21.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0062"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "1"; repStart "-5312"; chr9 rmsk exon 29659744 29660160 1992 - . gene_id "HML1_9p21.1b"; transcript_id "HML1_9p21.1b"; locus "HML1_9p21.1b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0062"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVL_9p21.1 ### chr9 rmsk gene 29750637 29752071 . - . gene_id "ERVL_9p21.1"; transcript_id "ERVL_9p21.1"; locus "ERVL_9p21.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0265"; model_cov "856"; model_pct "14.9"; chr9 rmsk exon 29750637 29751128 538 - . gene_id "ERVL_9p21.1"; transcript_id "ERVL_9p21.1"; locus "ERVL_9p21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0265"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "1872"; repStart "-3336"; chr9 rmsk exon 29751759 29752071 289 - . gene_id "ERVL_9p21.1"; transcript_id "ERVL_9p21.1"; locus "ERVL_9p21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0265"; repClass "LTR"; repEnd "689"; repFamily "ERVL"; repLeft "382"; repStart "-5068"; ### HML1_9p21.1c ### chr9 rmsk gene 29775513 29776757 . - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0063"; model_cov "869"; model_pct "14.3"; chr9 rmsk exon 29775513 29775881 1917 - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0063"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr9 rmsk exon 29775870 29775917 287 - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0063"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; chr9 rmsk exon 29775921 29776036 758 - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0063"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chr9 rmsk exon 29776113 29776290 1446 - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0063"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5716"; repStart "-199"; chr9 rmsk exon 29776294 29776757 1849 - . gene_id "HML1_9p21.1c"; transcript_id "HML1_9p21.1c"; locus "HML1_9p21.1c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0063"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "5036"; repStart "-495"; ### HERVW_9p21.1b ### chr9 rmsk gene 29776759 29779438 . - . gene_id "HERVW_9p21.1b"; transcript_id "HERVW_9p21.1b"; locus "HERVW_9p21.1b"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0191"; model_cov "2519"; model_pct "29.2"; chr9 rmsk exon 29776759 29776806 318 - . gene_id "HERVW_9p21.1b"; transcript_id "HERVW_9p21.1b"; locus "HERVW_9p21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0191"; repClass "LTR"; repEnd "480"; repFamily "ERV1"; repLeft "433"; repStart "-8146"; chr9 rmsk exon 29776810 29778236 9654 - . gene_id "HERVW_9p21.1b"; transcript_id "HERVW_9p21.1b"; locus "HERVW_9p21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0191"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr9 rmsk exon 29778222 29779010 8236 - . gene_id "HERVW_9p21.1b"; transcript_id "HERVW_9p21.1b"; locus "HERVW_9p21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0191"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1248"; repStart "-6612"; chr9 rmsk exon 29779061 29779438 8236 - . gene_id "HERVW_9p21.1b"; transcript_id "HERVW_9p21.1b"; locus "HERVW_9p21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0191"; repClass "LTR"; repEnd "1247"; repFamily "ERV1"; repLeft "865"; repStart "-7379"; ### HML1_9p21.1d ### chr9 rmsk gene 29779508 29780677 . - . gene_id "HML1_9p21.1d"; transcript_id "HML1_9p21.1d"; locus "HML1_9p21.1d"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0064"; model_cov "783"; model_pct "12.8"; chr9 rmsk exon 29779508 29780275 5138 - . gene_id "HML1_9p21.1d"; transcript_id "HML1_9p21.1d"; locus "HML1_9p21.1d"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0064"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "1"; repStart "-5312"; chr9 rmsk exon 29780276 29780677 1740 - . gene_id "HML1_9p21.1d"; transcript_id "HML1_9p21.1d"; locus "HML1_9p21.1d"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0064"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "7"; repStart "0"; ### MER101_9p21.1 ### chr9 rmsk gene 29984333 29987281 . - . gene_id "MER101_9p21.1"; transcript_id "MER101_9p21.1"; locus "MER101_9p21.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0243"; model_cov "2140"; model_pct "32.2"; chr9 rmsk exon 29984333 29984654 1641 - . gene_id "MER101_9p21.1"; transcript_id "MER101_9p21.1"; locus "MER101_9p21.1"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0243"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "24"; repStart "-107"; chr9 rmsk exon 29984729 29986291 9015 - . gene_id "MER101_9p21.1"; transcript_id "MER101_9p21.1"; locus "MER101_9p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0243"; repClass "LTR"; repEnd "6552"; repFamily "ERV1"; repLeft "5052"; repStart "-87"; chr9 rmsk exon 29986503 29986735 1005 - . gene_id "MER101_9p21.1"; transcript_id "MER101_9p21.1"; locus "MER101_9p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0243"; repClass "LTR"; repEnd "5057"; repFamily "ERV1"; repLeft "4903"; repStart "-1582"; chr9 rmsk exon 29986770 29987281 2968 - . gene_id "MER101_9p21.1"; transcript_id "MER101_9p21.1"; locus "MER101_9p21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0243"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "4410"; repStart "-1743"; ### HERVL_9p21.1b ### chr9 rmsk gene 30087121 30090036 . - . gene_id "HERVL_9p21.1b"; transcript_id "HERVL_9p21.1b"; locus "HERVL_9p21.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0801"; model_cov "2387"; model_pct "42.2"; chr9 rmsk exon 30087121 30087664 2024 - . gene_id "HERVL_9p21.1b"; transcript_id "HERVL_9p21.1b"; locus "HERVL_9p21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0801"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr9 rmsk exon 30087665 30089509 13462 - . gene_id "HERVL_9p21.1b"; transcript_id "HERVL_9p21.1b"; locus "HERVL_9p21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0801"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3793"; repStart "0"; chr9 rmsk exon 30089501 30090036 3943 - . gene_id "HERVL_9p21.1b"; transcript_id "HERVL_9p21.1b"; locus "HERVL_9p21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0801"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "3037"; repStart "-2091"; ### HERVL18_9p21.1 ### chr9 rmsk gene 30197986 30201455 . + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0096"; model_cov "2395"; model_pct "39.6"; chr9 rmsk exon 30197986 30198206 1123 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "-98"; repStart "258"; chr9 rmsk exon 30198284 30198506 876 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "385"; chr9 rmsk exon 30198514 30198834 1405 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "-5734"; repStart "2"; chr9 rmsk exon 30198809 30199079 1404 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "764"; repFamily "ERVL"; repLeft "-5283"; repStart "492"; chr9 rmsk exon 30199089 30199183 512 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "967"; repFamily "ERVL"; repLeft "-5080"; repStart "874"; chr9 rmsk exon 30199176 30199522 1135 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1399"; chr9 rmsk exon 30199522 30199754 1117 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "2436"; repFamily "ERVL"; repLeft "-3611"; repStart "2119"; chr9 rmsk exon 30199754 30200566 2946 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "3573"; repFamily "ERVL"; repLeft "-2474"; repStart "2725"; chr9 rmsk exon 30200575 30200664 541 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr9 rmsk exon 30200665 30200714 297 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "-789"; repStart "5209"; chr9 rmsk exon 30200964 30201455 798 + . gene_id "HERVL18_9p21.1"; transcript_id "HERVL18_9p21.1"; locus "HERVL18_9p21.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0096"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_9p21.1b ### chr9 rmsk gene 30298873 30307700 . + . gene_id "ERVLB4_9p21.1b"; transcript_id "ERVLB4_9p21.1b"; locus "ERVLB4_9p21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1019"; model_cov "4494"; model_pct "78.6"; chr9 rmsk exon 30298873 30299076 1755 + . gene_id "ERVLB4_9p21.1b"; transcript_id "ERVLB4_9p21.1b"; locus "ERVLB4_9p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1019"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "-5505"; repStart "1"; chr9 rmsk exon 30300659 30300946 1755 + . gene_id "ERVLB4_9p21.1b"; transcript_id "ERVLB4_9p21.1b"; locus "ERVLB4_9p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1019"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-5200"; repStart "210"; chr9 rmsk exon 30303251 30307034 19730 + . gene_id "ERVLB4_9p21.1b"; transcript_id "ERVLB4_9p21.1b"; locus "ERVLB4_9p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1019"; repClass "LTR"; repEnd "4385"; repFamily "ERVL"; repLeft "-1329"; repStart "509"; chr9 rmsk exon 30307595 30307700 19730 + . gene_id "ERVLB4_9p21.1b"; transcript_id "ERVLB4_9p21.1b"; locus "ERVLB4_9p21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1019"; repClass "LTR"; repEnd "4492"; repFamily "ERVL"; repLeft "-1222"; repStart "4386"; ### ERV316A3_9p21.1c ### chr9 rmsk gene 30472901 30474045 . - . gene_id "ERV316A3_9p21.1c"; transcript_id "ERV316A3_9p21.1c"; locus "ERV316A3_9p21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1709"; model_cov "659"; model_pct "12.6"; chr9 rmsk exon 30472901 30473333 1095 - . gene_id "ERV316A3_9p21.1c"; transcript_id "ERV316A3_9p21.1c"; locus "ERV316A3_9p21.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1709"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "8"; repStart "-8"; chr9 rmsk exon 30473390 30474045 1086 - . gene_id "ERV316A3_9p21.1c"; transcript_id "ERV316A3_9p21.1c"; locus "ERV316A3_9p21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1709"; repClass "LTR"; repEnd "5184"; repFamily "ERVL"; repLeft "4525"; repStart "-42"; ### ERV316A3_9p21.1d ### chr9 rmsk gene 30560066 30562320 . - . gene_id "ERV316A3_9p21.1d"; transcript_id "ERV316A3_9p21.1d"; locus "ERV316A3_9p21.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1710"; model_cov "1883"; model_pct "36.0"; chr9 rmsk exon 30560066 30560484 2856 - . gene_id "ERV316A3_9p21.1d"; transcript_id "ERV316A3_9p21.1d"; locus "ERV316A3_9p21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1710"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "2442"; repStart "-2387"; chr9 rmsk exon 30560817 30562320 2856 - . gene_id "ERV316A3_9p21.1d"; transcript_id "ERV316A3_9p21.1d"; locus "ERV316A3_9p21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1710"; repClass "LTR"; repEnd "2441"; repFamily "ERVL"; repLeft "955"; repStart "-2785"; ### MER61_9p21.1 ### chr9 rmsk gene 30851131 30855785 . + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0241"; model_cov "4488"; model_pct "86.0"; chr9 rmsk exon 30851131 30851473 2178 + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0241"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 30851474 30852753 3381 + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0241"; repClass "LTR"; repEnd "1917"; repFamily "ERV1"; repLeft "-3300"; repStart "1"; chr9 rmsk exon 30852750 30854989 15713 + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0241"; repClass "LTR"; repEnd "4702"; repFamily "ERV1"; repLeft "-515"; repStart "2477"; chr9 rmsk exon 30855027 30855450 2260 + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0241"; repClass "LTR"; repEnd "5215"; repFamily "ERV1"; repLeft "-2"; repStart "4868"; chr9 rmsk exon 30855455 30855785 2132 + . gene_id "MER61_9p21.1"; transcript_id "MER61_9p21.1"; locus "MER61_9p21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0241"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### MER34B_9p21.1 ### chr9 rmsk gene 31239333 31240265 . - . gene_id "MER34B_9p21.1"; transcript_id "MER34B_9p21.1"; locus "MER34B_9p21.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0176"; model_cov "1247"; model_pct "23.3"; chr9 rmsk exon 31239333 31240265 1973 - . gene_id "MER34B_9p21.1"; transcript_id "MER34B_9p21.1"; locus "MER34B_9p21.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0176"; repClass "LTR"; repEnd "3110"; repFamily "ERV1"; repLeft "1863"; repStart "-2246"; ### HERVH_9p21.1a ### chr9 rmsk gene 31326307 31334697 . + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0748"; model_cov "7378"; model_pct "95.7"; chr9 rmsk exon 31326307 31326754 3568 + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0748"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 31326757 31329821 19471 + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0748"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 31329801 31329950 964 + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0748"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 31329941 31334249 26652 + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0748"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3479"; chr9 rmsk exon 31334250 31334697 3458 + . gene_id "HERVH_9p21.1a"; transcript_id "HERVH_9p21.1a"; locus "HERVH_9p21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0748"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_9p21.1b ### chr9 rmsk gene 31464241 31470347 . - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0317"; model_cov "7057"; model_pct "100.0"; chr9 rmsk exon 31464241 31464777 3819 - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0317"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 31464778 31467971 13457 - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0317"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "954"; repStart "-2"; chr9 rmsk exon 31467954 31468003 291 - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0317"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "2167"; repStart "-3726"; chr9 rmsk exon 31467980 31469721 4378 - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0317"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "3"; repStart "-3929"; chr9 rmsk exon 31469806 31470347 3967 - . gene_id "MER41_9p21.1b"; transcript_id "MER41_9p21.1b"; locus "MER41_9p21.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0317"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "19"; repStart "0"; ### ERV316A3_9p21.1e ### chr9 rmsk gene 31697885 31699269 . - . gene_id "ERV316A3_9p21.1e"; transcript_id "ERV316A3_9p21.1e"; locus "ERV316A3_9p21.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1713"; model_cov "955"; model_pct "18.3"; chr9 rmsk exon 31697885 31698292 1456 - . gene_id "ERV316A3_9p21.1e"; transcript_id "ERV316A3_9p21.1e"; locus "ERV316A3_9p21.1e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1713"; repClass "LTR"; repEnd "482"; repFamily "ERVL"; repLeft "72"; repStart "-7"; chr9 rmsk exon 31698527 31698771 534 - . gene_id "ERV316A3_9p21.1e"; transcript_id "ERV316A3_9p21.1e"; locus "ERV316A3_9p21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1713"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "4684"; repStart "-283"; chr9 rmsk exon 31698780 31699269 597 - . gene_id "ERV316A3_9p21.1e"; transcript_id "ERV316A3_9p21.1e"; locus "ERV316A3_9p21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1713"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "3698"; repStart "-832"; ### HERVK11_9p21.1 ### chr9 rmsk gene 31770537 31778849 . + . gene_id "HERVK11_9p21.1"; transcript_id "HERVK11_9p21.1"; locus "HERVK11_9p21.1"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0058"; model_cov "7213"; model_pct "90.7"; chr9 rmsk exon 31770537 31771654 4896 + . gene_id "HERVK11_9p21.1"; transcript_id "HERVK11_9p21.1"; locus "HERVK11_9p21.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0058"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr9 rmsk exon 31771655 31778849 54129 + . gene_id "HERVK11_9p21.1"; transcript_id "HERVK11_9p21.1"; locus "HERVK11_9p21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0058"; repClass "LTR"; repEnd "7214"; repFamily "ERVK"; repLeft "-739"; repStart "1"; ### HUERSP2_9p21.1 ### chr9 rmsk gene 31807545 31809731 . - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0074"; model_cov "871"; model_pct "28.2"; chr9 rmsk exon 31807545 31807617 566 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "765"; repStart "0"; chr9 rmsk exon 31807618 31808218 2703 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "401"; repStart "-2099"; chr9 rmsk exon 31808297 31808332 779 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "343"; repStart "-2713"; chr9 rmsk exon 31808636 31808763 779 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "342"; repFamily "ERV1"; repLeft "213"; repStart "-2746"; chr9 rmsk exon 31808787 31808908 502 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "5"; repStart "-2961"; chr9 rmsk exon 31808912 31809731 4727 - . gene_id "HUERSP2_9p21.1"; transcript_id "HUERSP2_9p21.1"; locus "HUERSP2_9p21.1"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0074"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_9p21.1c ### chr9 rmsk gene 32145867 32147331 . + . gene_id "HERVL_9p21.1c"; transcript_id "HERVL_9p21.1c"; locus "HERVL_9p21.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0802"; model_cov "1386"; model_pct "24.5"; chr9 rmsk exon 32145867 32147237 10109 + . gene_id "HERVL_9p21.1c"; transcript_id "HERVL_9p21.1c"; locus "HERVL_9p21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0802"; repClass "LTR"; repEnd "1397"; repFamily "ERVL"; repLeft "-4257"; repStart "11"; chr9 rmsk exon 32147238 32147331 635 + . gene_id "HERVL_9p21.1c"; transcript_id "HERVL_9p21.1c"; locus "HERVL_9p21.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0802"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "359"; ### HERVH_9p21.1b ### chr9 rmsk gene 32164364 32169199 . - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0749"; model_cov "4425"; model_pct "57.4"; chr9 rmsk exon 32164364 32164770 2672 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 32164834 32165150 1967 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "7655"; repFamily "ERV1"; repLeft "7322"; repStart "-58"; chr9 rmsk exon 32165149 32165369 1308 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 32165371 32166031 4491 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr9 rmsk exon 32166034 32166864 5515 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr9 rmsk exon 32166851 32169199 15292 - . gene_id "HERVH_9p21.1b"; transcript_id "HERVH_9p21.1b"; locus "HERVH_9p21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0749"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "633"; repStart "-4721"; ### HERVL_9p21.1d ### chr9 rmsk gene 32352869 32355206 . - . gene_id "HERVL_9p21.1d"; transcript_id "HERVL_9p21.1d"; locus "HERVL_9p21.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0803"; model_cov "1970"; model_pct "34.8"; chr9 rmsk exon 32352869 32353238 2561 - . gene_id "HERVL_9p21.1d"; transcript_id "HERVL_9p21.1d"; locus "HERVL_9p21.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0803"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-70"; chr9 rmsk exon 32353239 32355206 15041 - . gene_id "HERVL_9p21.1d"; transcript_id "HERVL_9p21.1d"; locus "HERVL_9p21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0803"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3684"; repStart "0"; ### HERVL40_9p21.1 ### chr9 rmsk gene 32371344 32377156 . - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0260"; model_cov "3071"; model_pct "55.5"; chr9 rmsk exon 32371344 32371637 1167 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "161"; repStart "0"; chr9 rmsk exon 32371796 32371922 547 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "8"; repStart "-330"; chr9 rmsk exon 32371932 32372692 2760 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "4788"; repStart "-2"; chr9 rmsk exon 32372728 32372938 676 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "4670"; repFamily "ERVL"; repLeft "4449"; repStart "-860"; chr9 rmsk exon 32373394 32375094 4594 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "4373"; repFamily "ERVL"; repLeft "2699"; repStart "-1157"; chr9 rmsk exon 32376240 32376597 567 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "958"; repStart "-4136"; chr9 rmsk exon 32376882 32377156 1071 - . gene_id "HERVL40_9p21.1"; transcript_id "HERVL40_9p21.1"; locus "HERVL40_9p21.1"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0260"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "183"; repStart "0"; ### HERVL_9p21.1e ### chr9 rmsk gene 32859846 32860940 . - . gene_id "HERVL_9p21.1e"; transcript_id "HERVL_9p21.1e"; locus "HERVL_9p21.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0804"; model_cov "720"; model_pct "12.7"; chr9 rmsk exon 32859846 32860566 4985 - . gene_id "HERVL_9p21.1e"; transcript_id "HERVL_9p21.1e"; locus "HERVL_9p21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0804"; repClass "LTR"; repEnd "721"; repFamily "ERVL"; repLeft "1"; repStart "-4933"; chr9 rmsk exon 32860567 32860940 1202 - . gene_id "HERVL_9p21.1e"; transcript_id "HERVL_9p21.1e"; locus "HERVL_9p21.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0804"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "175"; repStart "0"; ### MER41_9p13.3a ### chr9 rmsk gene 33703617 33708862 . + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0318"; model_cov "5040"; model_pct "84.8"; chr9 rmsk exon 33703617 33704166 3884 + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0318"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 33704252 33704887 3692 + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0318"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "-5308"; repStart "1"; chr9 rmsk exon 33704876 33705835 8715 + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0318"; repClass "LTR"; repEnd "2091"; repFamily "ERV1"; repLeft "-3855"; repStart "736"; chr9 rmsk exon 33706148 33708332 10887 + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0318"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2896"; chr9 rmsk exon 33708333 33708862 3740 + . gene_id "MER41_9p13.3a"; transcript_id "MER41_9p13.3a"; locus "MER41_9p13.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0318"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_9p13.3 ### chr9 rmsk gene 33740523 33743641 . - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1020"; model_cov "2429"; model_pct "42.5"; chr9 rmsk exon 33740523 33740589 324 - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1020"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "447"; repStart "0"; chr9 rmsk exon 33740728 33740857 715 - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1020"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "357"; repStart "-40"; chr9 rmsk exon 33740877 33740967 484 - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1020"; repClass "LTR"; repEnd "62"; repFamily "ERVL"; repLeft "-35"; repStart "-458"; chr9 rmsk exon 33740968 33741161 14150 - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1020"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5499"; repStart "0"; chr9 rmsk exon 33741459 33743641 14150 - . gene_id "ERVLB4_9p13.3"; transcript_id "ERVLB4_9p13.3"; locus "ERVLB4_9p13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1020"; repClass "LTR"; repEnd "5498"; repFamily "ERVL"; repLeft "3284"; repStart "-216"; ### ERVLE_9p13.3a ### chr9 rmsk gene 33787122 33788777 . + . gene_id "ERVLE_9p13.3a"; transcript_id "ERVLE_9p13.3a"; locus "ERVLE_9p13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2265"; model_cov "799"; model_pct "14.1"; chr9 rmsk exon 33787122 33787758 1680 + . gene_id "ERVLE_9p13.3a"; transcript_id "ERVLE_9p13.3a"; locus "ERVLE_9p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2265"; repClass "LTR"; repEnd "3169"; repFamily "ERVL"; repLeft "-2498"; repStart "2497"; chr9 rmsk exon 33788649 33788777 516 + . gene_id "ERVLE_9p13.3a"; transcript_id "ERVLE_9p13.3a"; locus "ERVLE_9p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2265"; repClass "LTR"; repEnd "3761"; repFamily "ERVL"; repLeft "-1906"; repStart "3634"; ### ERV316A3_9p13.3a ### chr9 rmsk gene 34158413 34168326 . - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1715"; model_cov "3639"; model_pct "69.6"; chr9 rmsk exon 34158413 34158616 1559 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3990"; repFamily "ERVL"; repLeft "3787"; repStart "-1236"; chr9 rmsk exon 34159002 34159261 1559 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3786"; repFamily "ERVL"; repLeft "3519"; repStart "-1440"; chr9 rmsk exon 34159339 34159524 1805 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3380"; repFamily "ERVL"; repLeft "3197"; repStart "-1846"; chr9 rmsk exon 34159821 34159909 1805 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3196"; repFamily "ERVL"; repLeft "3105"; repStart "-2030"; chr9 rmsk exon 34160211 34160336 1805 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "3003"; repStart "-2122"; chr9 rmsk exon 34160696 34161001 1805 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "3002"; repFamily "ERVL"; repLeft "2682"; repStart "-2224"; chr9 rmsk exon 34161312 34161501 1805 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "2504"; repStart "-2545"; chr9 rmsk exon 34162097 34162422 3320 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "2184"; repStart "-2726"; chr9 rmsk exon 34162694 34162987 3320 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "2183"; repFamily "ERVL"; repLeft "1905"; repStart "-3043"; chr9 rmsk exon 34163315 34163957 3320 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "1904"; repFamily "ERVL"; repLeft "1269"; repStart "-3322"; chr9 rmsk exon 34164257 34164413 3320 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "1268"; repFamily "ERVL"; repLeft "1100"; repStart "-3958"; chr9 rmsk exon 34165656 34165972 3320 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "1099"; repFamily "ERVL"; repLeft "740"; repStart "-4127"; chr9 rmsk exon 34167152 34167246 883 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "871"; repFamily "ERVL"; repLeft "778"; repStart "-4355"; chr9 rmsk exon 34167539 34167748 883 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "777"; repFamily "ERVL"; repLeft "573"; repStart "-4449"; chr9 rmsk exon 34167783 34168025 721 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "232"; repStart "-4750"; chr9 rmsk exon 34168037 34168326 965 - . gene_id "ERV316A3_9p13.3a"; transcript_id "ERV316A3_9p13.3a"; locus "ERV316A3_9p13.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1715"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "126"; repStart "0"; ### ERVLE_9p13.3b ### chr9 rmsk gene 34696650 34699468 . + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2267"; model_cov "1737"; model_pct "30.7"; chr9 rmsk exon 34696650 34696794 339 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "699"; repFamily "ERVL"; repLeft "-4968"; repStart "555"; chr9 rmsk exon 34697032 34697211 331 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4518"; repStart "975"; chr9 rmsk exon 34697743 34698286 1080 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "1800"; repFamily "ERVL"; repLeft "-3867"; repStart "1236"; chr9 rmsk exon 34698377 34698491 720 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "3029"; repFamily "ERVL"; repLeft "-2638"; repStart "2926"; chr9 rmsk exon 34698780 34699276 723 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "3572"; repFamily "ERVL"; repLeft "-2095"; repStart "3030"; chr9 rmsk exon 34699265 34699468 925 + . gene_id "ERVLE_9p13.3b"; transcript_id "ERVLE_9p13.3b"; locus "ERVLE_9p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2267"; repClass "LTR"; repEnd "3788"; repFamily "ERVL"; repLeft "-1879"; repStart "3578"; ### ERV316A3_9p13.3b ### chr9 rmsk gene 34939323 34945492 . - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1716"; model_cov "3729"; model_pct "71.4"; chr9 rmsk exon 34939323 34939739 1734 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 34939764 34939908 617 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "5014"; repStart "-49"; chr9 rmsk exon 34940602 34941541 4619 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "5025"; repFamily "ERVL"; repLeft "4134"; repStart "-201"; chr9 rmsk exon 34941912 34942052 4619 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "3993"; repStart "-1093"; chr9 rmsk exon 34942048 34942678 4688 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "3077"; repFamily "ERVL"; repLeft "2398"; repStart "-2149"; chr9 rmsk exon 34943013 34943674 4688 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "2397"; repFamily "ERVL"; repLeft "1702"; repStart "-2829"; chr9 rmsk exon 34943801 34944725 2866 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "453"; repStart "-3833"; chr9 rmsk exon 34944968 34945183 828 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "95"; repStart "-4910"; chr9 rmsk exon 34945284 34945492 1769 - . gene_id "ERV316A3_9p13.3b"; transcript_id "ERV316A3_9p13.3b"; locus "ERV316A3_9p13.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1716"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "269"; repStart "0"; ### HERVH_9p13.3a ### chr9 rmsk gene 35003293 35009333 . + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0750"; model_cov "5263"; model_pct "68.2"; chr9 rmsk exon 35003293 35003704 2840 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 35003707 35007733 25399 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr9 rmsk exon 35007736 35008393 4421 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 35008395 35008606 1411 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 35008605 35008972 2274 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 35008973 35009333 2274 + . gene_id "HERVH_9p13.3a"; transcript_id "HERVH_9p13.3a"; locus "HERVH_9p13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0750"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_9p13.3a ### chr9 rmsk gene 35012292 35020722 . - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0450"; model_cov "5137"; model_pct "77.9"; chr9 rmsk exon 35012292 35012618 4933 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0450"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "349"; repStart "0"; chr9 rmsk exon 35012948 35013307 4933 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0450"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "1"; repStart "-316"; chr9 rmsk exon 35013312 35013974 7736 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5901"; repStart "0"; chr9 rmsk exon 35014269 35014436 7736 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "5900"; repFamily "ERV1"; repLeft "5721"; repStart "-698"; chr9 rmsk exon 35014741 35015390 7736 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "5720"; repFamily "ERV1"; repLeft "5058"; repStart "-878"; chr9 rmsk exon 35015699 35015836 7736 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "5057"; repFamily "ERV1"; repLeft "4914"; repStart "-1541"; chr9 rmsk exon 35016133 35016503 7126 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "4854"; repFamily "ERV1"; repLeft "4476"; repStart "-1744"; chr9 rmsk exon 35016796 35018442 7126 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "4475"; repFamily "ERV1"; repLeft "1730"; repStart "-2123"; chr9 rmsk exon 35019887 35020178 1542 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "2286"; repFamily "ERV1"; repLeft "2208"; repStart "-4312"; chr9 rmsk exon 35020480 35020722 1542 - . gene_id "MER4_9p13.3a"; transcript_id "MER4_9p13.3a"; locus "MER4_9p13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0450"; repClass "LTR"; repEnd "2207"; repFamily "ERV1"; repLeft "1952"; repStart "-4391"; ### HERVH_9p13.3b ### chr9 rmsk gene 35020808 35025134 . - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0751"; model_cov "3873"; model_pct "50.2"; chr9 rmsk exon 35020808 35021462 4644 - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0751"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "3962"; repStart "-3094"; chr9 rmsk exon 35021456 35021836 2556 - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0751"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3357"; repStart "-3977"; chr9 rmsk exon 35021837 35024184 7918 - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0751"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "450"; repStart "-4883"; chr9 rmsk exon 35024240 35024670 1168 - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0751"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "1"; repStart "-7255"; chr9 rmsk exon 35024678 35025134 3896 - . gene_id "HERVH_9p13.3b"; transcript_id "HERVH_9p13.3b"; locus "HERVH_9p13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0751"; repClass "LTR"; repEnd "457"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### MER4_9p13.3b ### chr9 rmsk gene 35025135 35028325 . - . gene_id "MER4_9p13.3b"; transcript_id "MER4_9p13.3b"; locus "MER4_9p13.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0451"; model_cov "1129"; model_pct "17.1"; chr9 rmsk exon 35025135 35025629 2012 - . gene_id "MER4_9p13.3b"; transcript_id "MER4_9p13.3b"; locus "MER4_9p13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0451"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "1161"; repStart "-4953"; chr9 rmsk exon 35027092 35027649 2600 - . gene_id "MER4_9p13.3b"; transcript_id "MER4_9p13.3b"; locus "MER4_9p13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0451"; repClass "LTR"; repEnd "646"; repFamily "ERV1"; repLeft "1"; repStart "-5952"; chr9 rmsk exon 35027653 35028325 4673 - . gene_id "MER4_9p13.3b"; transcript_id "MER4_9p13.3b"; locus "MER4_9p13.3b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0451"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_9p13.3c ### chr9 rmsk gene 35126085 35134140 . + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0452"; model_cov "5122"; model_pct "77.6"; chr9 rmsk exon 35126085 35126537 2855 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0452"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "-121"; chr9 rmsk exon 35126538 35127009 3237 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "-1169"; repFamily "ERV1"; repLeft "-7767"; repStart "-1671"; chr9 rmsk exon 35127041 35127521 3404 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "-662"; repFamily "ERV1"; repLeft "-7260"; repStart "-1100"; chr9 rmsk exon 35127611 35127940 10886 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "2377"; repFamily "ERV1"; repLeft "-4221"; repStart "2082"; chr9 rmsk exon 35128254 35128835 10886 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-3613"; repStart "2378"; chr9 rmsk exon 35129139 35129394 10886 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "3371"; repFamily "ERV1"; repLeft "-3227"; repStart "2986"; chr9 rmsk exon 35129623 35129763 10886 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-3011"; repStart "3372"; chr9 rmsk exon 35130056 35131094 15384 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-2080"; repStart "3916"; chr9 rmsk exon 35131395 35132435 15384 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "5525"; repFamily "ERV1"; repLeft "-1073"; repStart "4519"; chr9 rmsk exon 35132731 35133761 15384 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0452"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5526"; chr9 rmsk exon 35133763 35134140 2550 + . gene_id "MER4_9p13.3c"; transcript_id "MER4_9p13.3c"; locus "MER4_9p13.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0452"; repClass "LTR"; repEnd "399"; repFamily "ERV1"; repLeft "-73"; repStart "1"; ### MER41_9p13.3b ### chr9 rmsk gene 35135993 35138122 . - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0319"; model_cov "2249"; model_pct "37.8"; chr9 rmsk exon 35135993 35136038 348 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0319"; repClass "LTR"; repEnd "1678"; repFamily "ERV1"; repLeft "1633"; repStart "-4268"; chr9 rmsk exon 35136042 35136126 312 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0319"; repClass "LTR"; repEnd "1735"; repFamily "ERV1"; repLeft "1645"; repStart "-4211"; chr9 rmsk exon 35136193 35136621 3473 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0319"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "1123"; repStart "-4367"; chr9 rmsk exon 35136920 35137117 3473 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0319"; repClass "LTR"; repEnd "1122"; repFamily "ERV1"; repLeft "934"; repStart "-4824"; chr9 rmsk exon 35137118 35137874 2953 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0319"; repClass "LTR"; repEnd "-119"; repFamily "ERV1"; repLeft "-1589"; repStart "-6065"; chr9 rmsk exon 35137961 35138122 1149 - . gene_id "MER41_9p13.3b"; transcript_id "MER41_9p13.3b"; locus "MER41_9p13.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0319"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "401"; repStart "0"; ### LTR19_9p13.3 ### chr9 rmsk gene 35142507 35144331 . + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0026"; model_cov "1280"; model_pct "22.9"; chr9 rmsk exon 35142507 35142659 735 + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0026"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "-4804"; repStart "631"; chr9 rmsk exon 35142662 35143191 2257 + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0026"; repClass "LTR"; repEnd "1700"; repFamily "ERV1"; repLeft "-3886"; repStart "739"; chr9 rmsk exon 35143503 35143623 2257 + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0026"; repClass "LTR"; repEnd "1924"; repFamily "ERV1"; repLeft "-3662"; repStart "1821"; chr9 rmsk exon 35143933 35143950 2257 + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0026"; repClass "LTR"; repEnd "1932"; repFamily "ERV1"; repLeft "-3654"; repStart "1925"; chr9 rmsk exon 35144259 35144331 2257 + . gene_id "LTR19_9p13.3"; transcript_id "LTR19_9p13.3"; locus "LTR19_9p13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0026"; repClass "LTR"; repEnd "1991"; repFamily "ERV1"; repLeft "-3595"; repStart "1933"; ### LTR25_9p13.3 ### chr9 rmsk gene 35149628 35150675 . + . gene_id "LTR25_9p13.3"; transcript_id "LTR25_9p13.3"; locus "LTR25_9p13.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0071"; model_cov "1138"; model_pct "15.8"; chr9 rmsk exon 35149628 35149862 811 + . gene_id "LTR25_9p13.3"; transcript_id "LTR25_9p13.3"; locus "LTR25_9p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0071"; repClass "LTR"; repEnd "4323"; repFamily "ERV1"; repLeft "-2865"; repStart "4048"; chr9 rmsk exon 35149864 35150427 1988 + . gene_id "LTR25_9p13.3"; transcript_id "LTR25_9p13.3"; locus "LTR25_9p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0071"; repClass "LTR"; repEnd "5913"; repFamily "ERV1"; repLeft "-1275"; repStart "5301"; chr9 rmsk exon 35150432 35150498 375 + . gene_id "LTR25_9p13.3"; transcript_id "LTR25_9p13.3"; locus "LTR25_9p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0071"; repClass "LTR"; repEnd "6012"; repFamily "ERV1"; repLeft "-1176"; repStart "5959"; chr9 rmsk exon 35150481 35150675 1294 + . gene_id "LTR25_9p13.3"; transcript_id "LTR25_9p13.3"; locus "LTR25_9p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0071"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6989"; ### HERVH_9p13.3c ### chr9 rmsk gene 35151223 35156610 . - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0752"; model_cov "4629"; model_pct "60.0"; chr9 rmsk exon 35151223 35151596 1963 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 35151598 35152164 3482 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7157"; repStart "-1"; chr9 rmsk exon 35152158 35152773 4353 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5400"; repStart "-1697"; chr9 rmsk exon 35152768 35153045 1211 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "4693"; repFamily "ERV1"; repLeft "4416"; repStart "-3020"; chr9 rmsk exon 35153111 35153163 3832 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "3554"; repFamily "ERV1"; repLeft "3512"; repStart "-4159"; chr9 rmsk exon 35153480 35155741 10178 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "3511"; repFamily "ERV1"; repLeft "830"; repStart "-4202"; chr9 rmsk exon 35155810 35156234 1156 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr9 rmsk exon 35156235 35156610 2150 - . gene_id "HERVH_9p13.3c"; transcript_id "HERVH_9p13.3c"; locus "HERVH_9p13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0752"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_9p13.3 ### chr9 rmsk gene 35156611 35159715 . - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0256"; model_cov "1511"; model_pct "22.4"; chr9 rmsk exon 35156611 35156685 2812 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "2466"; repFamily "ERV1"; repLeft "2392"; repStart "-4292"; chr9 rmsk exon 35157447 35157648 2812 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "2391"; repFamily "ERV1"; repLeft "2166"; repStart "-4367"; chr9 rmsk exon 35157947 35158247 2812 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "2165"; repFamily "ERV1"; repLeft "1908"; repStart "-4593"; chr9 rmsk exon 35158252 35158850 5510 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "1159"; repFamily "ERV1"; repLeft "522"; repStart "-5599"; chr9 rmsk exon 35159139 35159427 5510 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "232"; repStart "-6237"; chr9 rmsk exon 35159674 35159715 5510 - . gene_id "MER4B_9p13.3"; transcript_id "MER4B_9p13.3"; locus "MER4B_9p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0256"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "202"; repStart "-6527"; ### MER4_9p13.3d ### chr9 rmsk gene 35159754 35161206 . - . gene_id "MER4_9p13.3d"; transcript_id "MER4_9p13.3d"; locus "MER4_9p13.3d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0454"; model_cov "743"; model_pct "11.3"; chr9 rmsk exon 35159754 35159998 1240 - . gene_id "MER4_9p13.3d"; transcript_id "MER4_9p13.3d"; locus "MER4_9p13.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0454"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "2235"; repStart "-4129"; chr9 rmsk exon 35160299 35160413 1240 - . gene_id "MER4_9p13.3d"; transcript_id "MER4_9p13.3d"; locus "MER4_9p13.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0454"; repClass "LTR"; repEnd "2234"; repFamily "ERV1"; repLeft "2115"; repStart "-4364"; chr9 rmsk exon 35160783 35160886 363 - . gene_id "MER4_9p13.3d"; transcript_id "MER4_9p13.3d"; locus "MER4_9p13.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0454"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-718"; repStart "-7231"; chr9 rmsk exon 35160908 35161206 2729 - . gene_id "MER4_9p13.3d"; transcript_id "MER4_9p13.3d"; locus "MER4_9p13.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0454"; repClass "LTR"; repEnd "-1188"; repFamily "ERV1"; repLeft "-1493"; repStart "-7786"; ### HUERSP3B_9p13.3a ### chr9 rmsk gene 35186447 35191289 . - . gene_id "HUERSP3B_9p13.3a"; transcript_id "HUERSP3B_9p13.3a"; locus "HUERSP3B_9p13.3a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0079"; model_cov "3898"; model_pct "52.5"; chr9 rmsk exon 35186447 35186850 2604 - . gene_id "HUERSP3B_9p13.3a"; transcript_id "HUERSP3B_9p13.3a"; locus "HUERSP3B_9p13.3a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0079"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "220"; repStart "0"; chr9 rmsk exon 35186933 35189666 35343 - . gene_id "HUERSP3B_9p13.3a"; transcript_id "HUERSP3B_9p13.3a"; locus "HUERSP3B_9p13.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0079"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "4044"; repStart "-473"; chr9 rmsk exon 35189971 35190956 35343 - . gene_id "HUERSP3B_9p13.3a"; transcript_id "HUERSP3B_9p13.3a"; locus "HUERSP3B_9p13.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0079"; repClass "LTR"; repEnd "4043"; repFamily "ERV1"; repLeft "3091"; repStart "-3375"; chr9 rmsk exon 35191252 35191289 35343 - . gene_id "HUERSP3B_9p13.3a"; transcript_id "HUERSP3B_9p13.3a"; locus "HUERSP3B_9p13.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0079"; repClass "LTR"; repEnd "3090"; repFamily "ERV1"; repLeft "3045"; repStart "-4328"; ### HUERSP3B_9p13.3b ### chr9 rmsk gene 35191709 35195348 . - . gene_id "HUERSP3B_9p13.3b"; transcript_id "HUERSP3B_9p13.3b"; locus "HUERSP3B_9p13.3b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0080"; model_cov "3020"; model_pct "40.7"; chr9 rmsk exon 35191709 35193366 35343 - . gene_id "HUERSP3B_9p13.3b"; transcript_id "HUERSP3B_9p13.3b"; locus "HUERSP3B_9p13.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0080"; repClass "LTR"; repEnd "3090"; repFamily "ERV1"; repLeft "1052"; repStart "-4328"; chr9 rmsk exon 35193680 35194742 35343 - . gene_id "HUERSP3B_9p13.3b"; transcript_id "HUERSP3B_9p13.3b"; locus "HUERSP3B_9p13.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0080"; repClass "LTR"; repEnd "1005"; repFamily "ERV1"; repLeft "23"; repStart "-6413"; chr9 rmsk exon 35194770 35195348 3590 - . gene_id "HUERSP3B_9p13.3b"; transcript_id "HUERSP3B_9p13.3b"; locus "HUERSP3B_9p13.3b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0080"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "1"; repStart "-6"; ### HERVIP10FH_9p13.3 ### chr9 rmsk gene 35455417 35462089 . - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0101"; model_cov "5059"; model_pct "99.2"; chr9 rmsk exon 35455417 35455909 2993 - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0101"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 35455910 35458924 32859 - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0101"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "2056"; repStart "0"; chr9 rmsk exon 35459231 35461206 32859 - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0101"; repClass "LTR"; repEnd "2055"; repFamily "ERV1"; repLeft "338"; repStart "-3047"; chr9 rmsk exon 35461295 35461608 1756 - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0101"; repClass "LTR"; repEnd "-2204"; repFamily "ERV1"; repLeft "-2500"; repStart "-7306"; chr9 rmsk exon 35461609 35462089 3430 - . gene_id "HERVIP10FH_9p13.3"; transcript_id "HERVIP10FH_9p13.3"; locus "HERVIP10FH_9p13.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0101"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_9p13.3 ### chr9 rmsk gene 35581973 35585343 . + . gene_id "HML3_9p13.3"; transcript_id "HML3_9p13.3"; locus "HML3_9p13.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0147"; model_cov "2559"; model_pct "42.5"; chr9 rmsk exon 35581973 35582483 4014 + . gene_id "HML3_9p13.3"; transcript_id "HML3_9p13.3"; locus "HML3_9p13.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0147"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr9 rmsk exon 35582487 35582958 4307 + . gene_id "HML3_9p13.3"; transcript_id "HML3_9p13.3"; locus "HML3_9p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0147"; repClass "LTR"; repEnd "491"; repFamily "ERVK"; repLeft "-5530"; repStart "16"; chr9 rmsk exon 35583265 35583404 4307 + . gene_id "HML3_9p13.3"; transcript_id "HML3_9p13.3"; locus "HML3_9p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0147"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "-5398"; repStart "492"; chr9 rmsk exon 35583395 35585343 14826 + . gene_id "HML3_9p13.3"; transcript_id "HML3_9p13.3"; locus "HML3_9p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0147"; repClass "LTR"; repEnd "3302"; repFamily "ERVK"; repLeft "-2719"; repStart "1349"; ### HERVH_9p13.3d ### chr9 rmsk gene 35636819 35639025 . + . gene_id "HERVH_9p13.3d"; transcript_id "HERVH_9p13.3d"; locus "HERVH_9p13.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0753"; model_cov "1595"; model_pct "20.7"; chr9 rmsk exon 35636819 35637342 3199 + . gene_id "HERVH_9p13.3d"; transcript_id "HERVH_9p13.3d"; locus "HERVH_9p13.3d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0753"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 35637343 35637794 1986 + . gene_id "HERVH_9p13.3d"; transcript_id "HERVH_9p13.3d"; locus "HERVH_9p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0753"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr9 rmsk exon 35637853 35639025 3784 + . gene_id "HERVH_9p13.3d"; transcript_id "HERVH_9p13.3d"; locus "HERVH_9p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0753"; repClass "LTR"; repEnd "2866"; repFamily "ERV1"; repLeft "-4847"; repStart "1729"; ### HERVW_9p13.3 ### chr9 rmsk gene 35640305 35642827 . - . gene_id "HERVW_9p13.3"; transcript_id "HERVW_9p13.3"; locus "HERVW_9p13.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0192"; model_cov "1775"; model_pct "20.6"; chr9 rmsk exon 35640305 35641070 6006 - . gene_id "HERVW_9p13.3"; transcript_id "HERVW_9p13.3"; locus "HERVW_9p13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0192"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 35641071 35641362 2339 - . gene_id "HERVW_9p13.3"; transcript_id "HERVW_9p13.3"; locus "HERVW_9p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0192"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr9 rmsk exon 35641353 35641390 287 - . gene_id "HERVW_9p13.3"; transcript_id "HERVW_9p13.3"; locus "HERVW_9p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0192"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7511"; repStart "-1078"; chr9 rmsk exon 35641385 35642827 11799 - . gene_id "HERVW_9p13.3"; transcript_id "HERVW_9p13.3"; locus "HERVW_9p13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0192"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4572"; repStart "-2607"; ### ERVLE_9p13.3c ### chr9 rmsk gene 36016207 36017155 . - . gene_id "ERVLE_9p13.3c"; transcript_id "ERVLE_9p13.3c"; locus "ERVLE_9p13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2268"; model_cov "980"; model_pct "17.3"; chr9 rmsk exon 36016207 36017155 1633 - . gene_id "ERVLE_9p13.3c"; transcript_id "ERVLE_9p13.3c"; locus "ERVLE_9p13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2268"; repClass "LTR"; repEnd "2108"; repFamily "ERVL"; repLeft "1128"; repStart "-3559"; ### ERVLE_9p13.1a ### chr9 rmsk gene 38245321 38247003 . - . gene_id "ERVLE_9p13.1a"; transcript_id "ERVLE_9p13.1a"; locus "ERVLE_9p13.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2269"; model_cov "1143"; model_pct "20.2"; chr9 rmsk exon 38245321 38245448 3160 - . gene_id "ERVLE_9p13.1a"; transcript_id "ERVLE_9p13.1a"; locus "ERVLE_9p13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2269"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "5090"; repStart "-446"; chr9 rmsk exon 38245756 38246371 3160 - . gene_id "ERVLE_9p13.1a"; transcript_id "ERVLE_9p13.1a"; locus "ERVLE_9p13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2269"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "4458"; repStart "-578"; chr9 rmsk exon 38246372 38246731 1010 - . gene_id "ERVLE_9p13.1a"; transcript_id "ERVLE_9p13.1a"; locus "ERVLE_9p13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2269"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "22"; repStart "-5264"; chr9 rmsk exon 38246743 38247003 659 - . gene_id "ERVLE_9p13.1a"; transcript_id "ERVLE_9p13.1a"; locus "ERVLE_9p13.1a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2269"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "357"; repStart "-14"; ### ERVLE_9p13.1b ### chr9 rmsk gene 38429841 38431382 . + . gene_id "ERVLE_9p13.1b"; transcript_id "ERVLE_9p13.1b"; locus "ERVLE_9p13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2270"; model_cov "1523"; model_pct "26.9"; chr9 rmsk exon 38429841 38431232 3636 + . gene_id "ERVLE_9p13.1b"; transcript_id "ERVLE_9p13.1b"; locus "ERVLE_9p13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2270"; repClass "LTR"; repEnd "1836"; repFamily "ERVL"; repLeft "-3831"; repStart "404"; chr9 rmsk exon 38431299 38431382 319 + . gene_id "ERVLE_9p13.1b"; transcript_id "ERVLE_9p13.1b"; locus "ERVLE_9p13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2270"; repClass "LTR"; repEnd "2132"; repFamily "ERVL"; repLeft "-3535"; repStart "2041"; ### ERVLB4_9p13.1 ### chr9 rmsk gene 38807814 38808901 . - . gene_id "ERVLB4_9p13.1"; transcript_id "ERVLB4_9p13.1"; locus "ERVLB4_9p13.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1023"; model_cov "573"; model_pct "10.0"; chr9 rmsk exon 38807814 38808399 2905 - . gene_id "ERVLB4_9p13.1"; transcript_id "ERVLB4_9p13.1"; locus "ERVLB4_9p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1023"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "4769"; repStart "-372"; chr9 rmsk exon 38808487 38808901 1682 - . gene_id "ERVLB4_9p13.1"; transcript_id "ERVLB4_9p13.1"; locus "ERVLB4_9p13.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1023"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "1"; repStart "-91"; ### MER4B_9p13.1 ### chr9 rmsk gene 38914191 38915623 . - . gene_id "MER4B_9p13.1"; transcript_id "MER4B_9p13.1"; locus "MER4B_9p13.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0258"; model_cov "1385"; model_pct "20.5"; chr9 rmsk exon 38914191 38915623 4041 - . gene_id "MER4B_9p13.1"; transcript_id "MER4B_9p13.1"; locus "MER4B_9p13.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0258"; repClass "LTR"; repEnd "4464"; repFamily "ERV1"; repLeft "3079"; repStart "-2294"; ### ERVLB4_9p12 ### chr9 rmsk gene 39706606 39714266 . + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1024"; model_cov "5717"; model_pct "100.0"; chr9 rmsk exon 39706606 39707001 1071 + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1024"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "156"; chr9 rmsk exon 39707025 39708188 6013 + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1024"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "-4497"; repStart "4"; chr9 rmsk exon 39709065 39709488 2013 + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1024"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "-4052"; repStart "1216"; chr9 rmsk exon 39709888 39713738 9594 + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1024"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "1656"; chr9 rmsk exon 39713740 39714266 2384 + . gene_id "ERVLB4_9p12"; transcript_id "ERVLB4_9p12"; locus "ERVLB4_9p12"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1024"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "-13"; repStart "2"; ### LTR25_9p12 ### chr9 rmsk gene 39930352 39936362 . - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0072"; model_cov "6633"; model_pct "92.3"; chr9 rmsk exon 39930352 39930621 17116 - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0072"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "6913"; repStart "-2"; chr9 rmsk exon 39930647 39933088 17116 - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0072"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "4503"; repStart "-276"; chr9 rmsk exon 39933455 39934905 17116 - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0072"; repClass "LTR"; repEnd "6883"; repFamily "ERV1"; repLeft "4248"; repStart "-305"; chr9 rmsk exon 39935226 39935853 2839 - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0072"; repClass "LTR"; repEnd "6802"; repFamily "ERV1"; repLeft "6177"; repStart "-386"; chr9 rmsk exon 39935844 39936362 967 - . gene_id "LTR25_9p12"; transcript_id "LTR25_9p12"; locus "LTR25_9p12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0072"; repClass "LTR"; repEnd "983"; repFamily "ERV1"; repLeft "292"; repStart "-6205"; ### HERVL_9p11.2 ### chr9 rmsk gene 40636832 40640838 . - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0805"; model_cov "3251"; model_pct "57.5"; chr9 rmsk exon 40636832 40637214 2656 - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0805"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9 rmsk exon 40637215 40639653 13754 - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0805"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9 rmsk exon 40639647 40640144 3404 - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0805"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr9 rmsk exon 40640134 40640396 1699 - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0805"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr9 rmsk exon 40640397 40640838 2793 - . gene_id "HERVL_9p11.2"; transcript_id "HERVL_9p11.2"; locus "HERVL_9p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0805"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVIP10F_9p11.2 ### chr9 rmsk gene 40746808 40755339 . - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0064"; model_cov "7196"; model_pct "93.0"; chr9 rmsk exon 40746808 40747326 2617 - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0064"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr9 rmsk exon 40747404 40749325 12030 - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0064"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "5804"; repStart "-7"; chr9 rmsk exon 40749312 40752615 30373 - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0064"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "1778"; repStart "-2629"; chr9 rmsk exon 40752914 40754811 30373 - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0064"; repClass "LTR"; repEnd "1893"; repFamily "ERV1"; repLeft "-47"; repStart "-5844"; chr9 rmsk exon 40754826 40755339 2379 - . gene_id "HERVIP10F_9p11.2"; transcript_id "HERVIP10F_9p11.2"; locus "HERVIP10F_9p11.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0064"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "3"; repStart "-62"; ### ERV316A3_9p11.2 ### chr9 rmsk gene 40798717 40801235 . + . gene_id "ERV316A3_9p11.2"; transcript_id "ERV316A3_9p11.2"; locus "ERV316A3_9p11.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1719"; model_cov "2070"; model_pct "39.6"; chr9 rmsk exon 40798717 40799924 2492 + . gene_id "ERV316A3_9p11.2"; transcript_id "ERV316A3_9p11.2"; locus "ERV316A3_9p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1719"; repClass "LTR"; repEnd "4211"; repFamily "ERVL"; repLeft "-1015"; repStart "2875"; chr9 rmsk exon 40799978 40800523 2492 + . gene_id "ERV316A3_9p11.2"; transcript_id "ERV316A3_9p11.2"; locus "ERV316A3_9p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1719"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4212"; chr9 rmsk exon 40800649 40800778 471 + . gene_id "ERV316A3_9p11.2"; transcript_id "ERV316A3_9p11.2"; locus "ERV316A3_9p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1719"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-28"; repStart "5069"; chr9 rmsk exon 40800986 40801235 755 + . gene_id "ERV316A3_9p11.2"; transcript_id "ERV316A3_9p11.2"; locus "ERV316A3_9p11.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1719"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-7"; repStart "175"; ### LTR25_9p11.2a ### chr9 rmsk gene 41527165 41528301 . + . gene_id "LTR25_9p11.2a"; transcript_id "LTR25_9p11.2a"; locus "LTR25_9p11.2a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0073"; model_cov "1316"; model_pct "18.3"; chr9 rmsk exon 41527165 41527683 946 + . gene_id "LTR25_9p11.2a"; transcript_id "LTR25_9p11.2a"; locus "LTR25_9p11.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0073"; repClass "LTR"; repEnd "983"; repFamily "ERV1"; repLeft "-6205"; repStart "292"; chr9 rmsk exon 41527674 41528301 2876 + . gene_id "LTR25_9p11.2a"; transcript_id "LTR25_9p11.2a"; locus "LTR25_9p11.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0073"; repClass "LTR"; repEnd "6801"; repFamily "ERV1"; repLeft "-387"; repStart "6176"; ### LTR25_9p11.2b ### chr9 rmsk gene 41528626 41533198 . + . gene_id "LTR25_9p11.2b"; transcript_id "LTR25_9p11.2b"; locus "LTR25_9p11.2b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0074"; model_cov "4967"; model_pct "69.1"; chr9 rmsk exon 41528626 41530076 17134 + . gene_id "LTR25_9p11.2b"; transcript_id "LTR25_9p11.2b"; locus "LTR25_9p11.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0074"; repClass "LTR"; repEnd "4501"; repFamily "ERV1"; repLeft "-2687"; repStart "2216"; chr9 rmsk exon 41530443 41532903 17134 + . gene_id "LTR25_9p11.2b"; transcript_id "LTR25_9p11.2b"; locus "LTR25_9p11.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0074"; repClass "LTR"; repEnd "6911"; repFamily "ERV1"; repLeft "-277"; repStart "4502"; chr9 rmsk exon 41532929 41533198 17134 + . gene_id "LTR25_9p11.2b"; transcript_id "LTR25_9p11.2b"; locus "LTR25_9p11.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0074"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "-3"; repStart "6912"; ### HERVH_9p11.2 ### chr9 rmsk gene 41631249 41634104 . - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0755"; model_cov "2324"; model_pct "30.1"; chr9 rmsk exon 41631249 41631642 2311 - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0755"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 41631643 41632075 2895 - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0755"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr9 rmsk exon 41632095 41633587 7239 - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0755"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4641"; repStart "-1290"; chr9 rmsk exon 41633590 41633706 726 - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0755"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "2613"; repStart "-4988"; chr9 rmsk exon 41633714 41634104 2375 - . gene_id "HERVH_9p11.2"; transcript_id "HERVH_9p11.2"; locus "HERVH_9p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0755"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_9p11.1 ### chr9 rmsk gene 42464635 42472317 . + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0807"; model_cov "5702"; model_pct "100.0"; chr9 rmsk exon 42464635 42464970 1113 + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; repName "MLT2B1"; geneRegion "ltr"; locid "HERVL-int_0807"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "120"; chr9 rmsk exon 42465055 42466218 6011 + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0807"; repClass "LTR"; repEnd "1157"; repFamily "ERVL"; repLeft "-4497"; repStart "-56"; chr9 rmsk exon 42467090 42467512 1962 + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0807"; repClass "LTR"; repEnd "1602"; repFamily "ERVL"; repLeft "-4052"; repStart "1156"; chr9 rmsk exon 42467910 42471787 11860 + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0807"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "1609"; chr9 rmsk exon 42471790 42472317 2365 + . gene_id "HERVL_9p11.1"; transcript_id "HERVL_9p11.1"; locus "HERVL_9p11.1"; repName "MLT2B4"; geneRegion "ltr"; locid "HERVL-int_0807"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "-13"; repStart "1"; ### HERVL_9q11 ### chr9 rmsk gene 43267871 43270940 . - . gene_id "HERVL_9q11"; transcript_id "HERVL_9q11"; locus "HERVL_9q11"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0808"; model_cov "2753"; model_pct "48.7"; chr9 rmsk exon 43267871 43268254 2535 - . gene_id "HERVL_9q11"; transcript_id "HERVL_9q11"; locus "HERVL_9q11"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0808"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9 rmsk exon 43268255 43270691 13460 - . gene_id "HERVL_9q11"; transcript_id "HERVL_9q11"; locus "HERVL_9q11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0808"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9 rmsk exon 43270685 43270940 1623 - . gene_id "HERVL_9q11"; transcript_id "HERVL_9q11"; locus "HERVL_9q11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0808"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1553"; repStart "-3840"; ### ERVLB4_9q12 ### chr9 rmsk gene 60756914 60764572 . - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1026"; model_cov "5691"; model_pct "99.6"; chr9 rmsk exon 60756914 60757441 2356 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr9 rmsk exon 60757442 60759217 9593 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3883"; repStart "0"; chr9 rmsk exon 60759212 60761291 5988 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "1609"; repStart "-1904"; chr9 rmsk exon 60761691 60762114 2003 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1216"; repStart "-4052"; chr9 rmsk exon 60762990 60764153 6042 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "4"; repStart "-4497"; chr9 rmsk exon 60764177 60764572 1071 - . gene_id "ERVLB4_9q12"; transcript_id "ERVLB4_9q12"; locus "ERVLB4_9q12"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1026"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "156"; repStart "0"; ### ERVLE_9q13 ### chr9 rmsk gene 61714495 61716114 . - . gene_id "ERVLE_9q13"; transcript_id "ERVLE_9q13"; locus "ERVLE_9q13"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2274"; model_cov "1467"; model_pct "25.9"; chr9 rmsk exon 61714495 61715476 1873 - . gene_id "ERVLE_9q13"; transcript_id "ERVLE_9q13"; locus "ERVLE_9q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2274"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "4336"; repStart "-434"; chr9 rmsk exon 61715478 61715939 454 - . gene_id "ERVLE_9q13"; transcript_id "ERVLE_9q13"; locus "ERVLE_9q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2274"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "3088"; repStart "-2126"; chr9 rmsk exon 61716010 61716114 253 - . gene_id "ERVLE_9q13"; transcript_id "ERVLE_9q13"; locus "ERVLE_9q13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2274"; repClass "LTR"; repEnd "2948"; repFamily "ERVL"; repLeft "2831"; repStart "-2719"; ### HERVH_9q13 ### chr9 rmsk gene 61841391 61844246 . - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0756"; model_cov "2324"; model_pct "30.1"; chr9 rmsk exon 61841391 61841784 2352 - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0756"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 61841785 61842217 2891 - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0756"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr9 rmsk exon 61842237 61843729 7252 - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0756"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4641"; repStart "-1290"; chr9 rmsk exon 61843732 61843848 696 - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0756"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "2613"; repStart "-4988"; chr9 rmsk exon 61843856 61844246 2401 - . gene_id "HERVH_9q13"; transcript_id "HERVH_9q13"; locus "HERVH_9q13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0756"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_9q13a ### chr9 rmsk gene 62032228 62033315 . - . gene_id "ERVLB4_9q13a"; transcript_id "ERVLB4_9q13a"; locus "ERVLB4_9q13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1027"; model_cov "573"; model_pct "10.0"; chr9 rmsk exon 62032228 62032813 2905 - . gene_id "ERVLB4_9q13a"; transcript_id "ERVLB4_9q13a"; locus "ERVLB4_9q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1027"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "4769"; repStart "-372"; chr9 rmsk exon 62032901 62033315 1663 - . gene_id "ERVLB4_9q13a"; transcript_id "ERVLB4_9q13a"; locus "ERVLB4_9q13a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1027"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "1"; repStart "-91"; ### MER4B_9q13 ### chr9 rmsk gene 62138611 62140045 . - . gene_id "MER4B_9q13"; transcript_id "MER4B_9q13"; locus "MER4B_9q13"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0259"; model_cov "1385"; model_pct "20.5"; chr9 rmsk exon 62138611 62140045 3867 - . gene_id "MER4B_9q13"; transcript_id "MER4B_9q13"; locus "MER4B_9q13"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0259"; repClass "LTR"; repEnd "4464"; repFamily "ERV1"; repLeft "3079"; repStart "-2294"; ### LTR25_9q13a ### chr9 rmsk gene 62314358 62315494 . + . gene_id "LTR25_9q13a"; transcript_id "LTR25_9q13a"; locus "LTR25_9q13a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0075"; model_cov "1316"; model_pct "18.3"; chr9 rmsk exon 62314358 62314876 967 + . gene_id "LTR25_9q13a"; transcript_id "LTR25_9q13a"; locus "LTR25_9q13a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0075"; repClass "LTR"; repEnd "983"; repFamily "ERV1"; repLeft "-6205"; repStart "292"; chr9 rmsk exon 62314867 62315494 2839 + . gene_id "LTR25_9q13a"; transcript_id "LTR25_9q13a"; locus "LTR25_9q13a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0075"; repClass "LTR"; repEnd "6801"; repFamily "ERV1"; repLeft "-387"; repStart "6176"; ### LTR25_9q13b ### chr9 rmsk gene 62315818 62320372 . + . gene_id "LTR25_9q13b"; transcript_id "LTR25_9q13b"; locus "LTR25_9q13b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0076"; model_cov "4967"; model_pct "69.1"; chr9 rmsk exon 62315818 62317268 17132 + . gene_id "LTR25_9q13b"; transcript_id "LTR25_9q13b"; locus "LTR25_9q13b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0076"; repClass "LTR"; repEnd "4501"; repFamily "ERV1"; repLeft "-2687"; repStart "2216"; chr9 rmsk exon 62317635 62320077 17132 + . gene_id "LTR25_9q13b"; transcript_id "LTR25_9q13b"; locus "LTR25_9q13b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0076"; repClass "LTR"; repEnd "6911"; repFamily "ERV1"; repLeft "-277"; repStart "4502"; chr9 rmsk exon 62320103 62320372 17132 + . gene_id "LTR25_9q13b"; transcript_id "LTR25_9q13b"; locus "LTR25_9q13b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0076"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "-3"; repStart "6912"; ### ERVLB4_9q13b ### chr9 rmsk gene 62628151 62635811 . - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1028"; model_cov "5691"; model_pct "99.6"; chr9 rmsk exon 62628151 62628678 2404 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr9 rmsk exon 62628679 62630454 9524 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3883"; repStart "0"; chr9 rmsk exon 62630449 62632529 5988 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "1609"; repStart "-1904"; chr9 rmsk exon 62632929 62633352 1982 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1216"; repStart "-4052"; chr9 rmsk exon 62634229 62635392 5997 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "4"; repStart "-4497"; chr9 rmsk exon 62635416 62635811 1094 - . gene_id "ERVLB4_9q13b"; transcript_id "ERVLB4_9q13b"; locus "ERVLB4_9q13b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1028"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "156"; repStart "0"; ### HERVL_9q13a ### chr9 rmsk gene 63436050 63440056 . - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0809"; model_cov "3251"; model_pct "57.5"; chr9 rmsk exon 63436050 63436432 2656 - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0809"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9 rmsk exon 63436433 63438871 13773 - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0809"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9 rmsk exon 63438865 63439362 3385 - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0809"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr9 rmsk exon 63439352 63439614 1699 - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0809"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr9 rmsk exon 63439615 63440056 2793 - . gene_id "HERVL_9q13a"; transcript_id "HERVL_9q13a"; locus "HERVL_9q13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0809"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_9q13b ### chr9 rmsk gene 64760038 64764067 . - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0811"; model_cov "3251"; model_pct "57.5"; chr9 rmsk exon 64760038 64760420 2638 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9 rmsk exon 64760421 64762863 13724 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9 rmsk exon 64762857 64763354 3387 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr9 rmsk exon 64763344 64763606 1717 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr9 rmsk exon 64763607 64763650 2641 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr9 rmsk exon 64763683 64764067 2641 - . gene_id "HERVL_9q13b"; transcript_id "HERVL_9q13b"; locus "HERVL_9q13b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0811"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### HERVIP10F_9q13 ### chr9 rmsk gene 64870415 64878944 . - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0065"; model_cov "7196"; model_pct "93.0"; chr9 rmsk exon 64870415 64870933 2608 - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0065"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr9 rmsk exon 64871011 64872932 12011 - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0065"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "5804"; repStart "-7"; chr9 rmsk exon 64872919 64876219 30339 - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0065"; repClass "LTR"; repEnd "5108"; repFamily "ERV1"; repLeft "1778"; repStart "-2629"; chr9 rmsk exon 64876518 64878416 30339 - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0065"; repClass "LTR"; repEnd "1893"; repFamily "ERV1"; repLeft "-47"; repStart "-5844"; chr9 rmsk exon 64878431 64878944 2357 - . gene_id "HERVIP10F_9q13"; transcript_id "HERVIP10F_9q13"; locus "HERVIP10F_9q13"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0065"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "3"; repStart "-62"; ### ERV316A3_9q13 ### chr9 rmsk gene 64919512 64922024 . + . gene_id "ERV316A3_9q13"; transcript_id "ERV316A3_9q13"; locus "ERV316A3_9q13"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1720"; model_cov "2070"; model_pct "39.6"; chr9 rmsk exon 64919512 64920719 2186 + . gene_id "ERV316A3_9q13"; transcript_id "ERV316A3_9q13"; locus "ERV316A3_9q13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1720"; repClass "LTR"; repEnd "4211"; repFamily "ERVL"; repLeft "-1015"; repStart "2875"; chr9 rmsk exon 64920773 64921318 2186 + . gene_id "ERV316A3_9q13"; transcript_id "ERV316A3_9q13"; locus "ERV316A3_9q13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1720"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4212"; chr9 rmsk exon 64921438 64921567 415 + . gene_id "ERV316A3_9q13"; transcript_id "ERV316A3_9q13"; locus "ERV316A3_9q13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1720"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-28"; repStart "5069"; chr9 rmsk exon 64921775 64922024 690 + . gene_id "ERV316A3_9q13"; transcript_id "ERV316A3_9q13"; locus "ERV316A3_9q13"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1720"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-7"; repStart "175"; ### HERVL_9q21.11a ### chr9 rmsk gene 65245525 65249540 . - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0812"; model_cov "3251"; model_pct "57.5"; chr9 rmsk exon 65245525 65245907 2638 - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0812"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9 rmsk exon 65245908 65248350 13746 - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0812"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9 rmsk exon 65248344 65248841 3368 - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0812"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr9 rmsk exon 65248831 65249093 1717 - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0812"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr9 rmsk exon 65249094 65249540 2804 - . gene_id "HERVL_9q21.11a"; transcript_id "HERVL_9q21.11a"; locus "HERVL_9q21.11a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0812"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_9q21.11b ### chr9 rmsk gene 65772421 65776436 . + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0815"; model_cov "3251"; model_pct "57.5"; chr9 rmsk exon 65772421 65772867 2804 + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0815"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 65772868 65773130 1717 + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0815"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "-5391"; repStart "1"; chr9 rmsk exon 65773120 65773617 3368 + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0815"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "-3840"; repStart "1317"; chr9 rmsk exon 65773611 65776053 13735 + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0815"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3162"; chr9 rmsk exon 65776054 65776436 2638 + . gene_id "HERVL_9q21.11b"; transcript_id "HERVL_9q21.11b"; locus "HERVL_9q21.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0815"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### ERVLB4_9q21.11a ### chr9 rmsk gene 66662669 66670329 . - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1029"; model_cov "5691"; model_pct "99.6"; chr9 rmsk exon 66662669 66663196 2366 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "1"; repStart "-13"; chr9 rmsk exon 66663197 66664972 9540 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3883"; repStart "0"; chr9 rmsk exon 66664967 66667047 5970 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "3810"; repFamily "ERVL"; repLeft "1609"; repStart "-1904"; chr9 rmsk exon 66667447 66667870 2003 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1216"; repStart "-4052"; chr9 rmsk exon 66668747 66669910 6012 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "1217"; repFamily "ERVL"; repLeft "4"; repStart "-4497"; chr9 rmsk exon 66669934 66670329 1094 - . gene_id "ERVLB4_9q21.11a"; transcript_id "ERVLB4_9q21.11a"; locus "ERVLB4_9q21.11a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1029"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "156"; repStart "0"; ### MER4B_9q21.11 ### chr9 rmsk gene 67448331 67449758 . + . gene_id "MER4B_9q21.11"; transcript_id "MER4B_9q21.11"; locus "MER4B_9q21.11"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0260"; model_cov "1385"; model_pct "20.5"; chr9 rmsk exon 67448331 67449758 3947 + . gene_id "MER4B_9q21.11"; transcript_id "MER4B_9q21.11"; locus "MER4B_9q21.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0260"; repClass "LTR"; repEnd "4464"; repFamily "ERV1"; repLeft "-2294"; repStart "3079"; ### ERVLB4_9q21.11b ### chr9 rmsk gene 67555396 67556838 . + . gene_id "ERVLB4_9q21.11b"; transcript_id "ERVLB4_9q21.11b"; locus "ERVLB4_9q21.11b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1030"; model_cov "603"; model_pct "10.6"; chr9 rmsk exon 67555396 67555810 1831 + . gene_id "ERVLB4_9q21.11b"; transcript_id "ERVLB4_9q21.11b"; locus "ERVLB4_9q21.11b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1030"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "-91"; repStart "1"; chr9 rmsk exon 67555898 67556493 3170 + . gene_id "ERVLB4_9q21.11b"; transcript_id "ERVLB4_9q21.11b"; locus "ERVLB4_9q21.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1030"; repClass "LTR"; repEnd "5338"; repFamily "ERVL"; repLeft "-376"; repStart "4769"; chr9 rmsk exon 67556804 67556838 3164 + . gene_id "ERVLB4_9q21.11b"; transcript_id "ERVLB4_9q21.11b"; locus "ERVLB4_9q21.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1030"; repClass "LTR"; repEnd "5373"; repFamily "ERVL"; repLeft "-341"; repStart "5339"; ### HERVH_9q21.11 ### chr9 rmsk gene 67736588 67739443 . + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0757"; model_cov "2344"; model_pct "30.4"; chr9 rmsk exon 67736588 67736978 2545 + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0757"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 67736986 67737102 697 + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0757"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "-4988"; repStart "2613"; chr9 rmsk exon 67737105 67738597 7237 + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0757"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4621"; chr9 rmsk exon 67738617 67739049 2895 + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0757"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr9 rmsk exon 67739050 67739443 2476 + . gene_id "HERVH_9q21.11"; transcript_id "HERVH_9q21.11"; locus "HERVH_9q21.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0757"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_9q21.11a ### chr9 rmsk gene 68663292 68665299 . + . gene_id "ERVLE_9q21.11a"; transcript_id "ERVLE_9q21.11a"; locus "ERVLE_9q21.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2282"; model_cov "2203"; model_pct "38.9"; chr9 rmsk exon 68663292 68665299 3516 + . gene_id "ERVLE_9q21.11a"; transcript_id "ERVLE_9q21.11a"; locus "ERVLE_9q21.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2282"; repClass "LTR"; repEnd "4666"; repFamily "ERVL"; repLeft "-1001"; repStart "2463"; ### ERVLE_9q21.11b ### chr9 rmsk gene 69268703 69270108 . - . gene_id "ERVLE_9q21.11b"; transcript_id "ERVLE_9q21.11b"; locus "ERVLE_9q21.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2283"; model_cov "708"; model_pct "12.5"; chr9 rmsk exon 69268703 69268731 2360 - . gene_id "ERVLE_9q21.11b"; transcript_id "ERVLE_9q21.11b"; locus "ERVLE_9q21.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2283"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "2079"; repStart "-3564"; chr9 rmsk exon 69269451 69270108 2360 - . gene_id "ERVLE_9q21.11b"; transcript_id "ERVLE_9q21.11b"; locus "ERVLE_9q21.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2283"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "1394"; repStart "-3589"; ### MER41_9q21.12 ### chr9 rmsk gene 69304827 69307567 . - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0320"; model_cov "2785"; model_pct "46.8"; chr9 rmsk exon 69304827 69305243 2791 - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0320"; repClass "LTR"; repEnd "5691"; repFamily "ERV1"; repLeft "5266"; repStart "-255"; chr9 rmsk exon 69305244 69305496 1687 - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0320"; repClass "LTR"; repEnd "1445"; repFamily "ERV1"; repLeft "1192"; repStart "-4501"; chr9 rmsk exon 69305475 69306161 2912 - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0320"; repClass "LTR"; repEnd "1158"; repFamily "ERV1"; repLeft "-148"; repStart "-4788"; chr9 rmsk exon 69306164 69306938 5305 - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0320"; repClass "LTR"; repEnd "802"; repFamily "ERV1"; repLeft "1"; repStart "-5144"; chr9 rmsk exon 69306939 69307567 5015 - . gene_id "MER41_9q21.12"; transcript_id "MER41_9q21.12"; locus "MER41_9q21.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0320"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_9q21.12 ### chr9 rmsk gene 69404587 69410267 . - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0758"; model_cov "5113"; model_pct "66.3"; chr9 rmsk exon 69404587 69404976 2276 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 69404977 69405353 2472 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr9 rmsk exon 69405354 69405568 1358 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 69405570 69406232 4539 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr9 rmsk exon 69406235 69407088 6498 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr9 rmsk exon 69407075 69409905 16472 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr9 rmsk exon 69409908 69410267 2225 - . gene_id "HERVH_9q21.12"; transcript_id "HERVH_9q21.12"; locus "HERVH_9q21.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0758"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "31"; repStart "-2"; ### ERVLE_9q21.12 ### chr9 rmsk gene 69768513 69772563 . - . gene_id "ERVLE_9q21.12"; transcript_id "ERVLE_9q21.12"; locus "ERVLE_9q21.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2284"; model_cov "1921"; model_pct "33.9"; chr9 rmsk exon 69768513 69768833 970 - . gene_id "ERVLE_9q21.12"; transcript_id "ERVLE_9q21.12"; locus "ERVLE_9q21.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2284"; repClass "LTR"; repEnd "4750"; repFamily "ERVL"; repLeft "4412"; repStart "-917"; chr9 rmsk exon 69769884 69770400 2637 - . gene_id "ERVLE_9q21.12"; transcript_id "ERVLE_9q21.12"; locus "ERVLE_9q21.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2284"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "3816"; repStart "-1272"; chr9 rmsk exon 69770885 69771235 2637 - . gene_id "ERVLE_9q21.12"; transcript_id "ERVLE_9q21.12"; locus "ERVLE_9q21.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2284"; repClass "LTR"; repEnd "3815"; repFamily "ERVL"; repLeft "3477"; repStart "-1852"; chr9 rmsk exon 69771943 69772563 2047 - . gene_id "ERVLE_9q21.12"; transcript_id "ERVLE_9q21.12"; locus "ERVLE_9q21.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2284"; repClass "LTR"; repEnd "3344"; repFamily "ERVL"; repLeft "2678"; repStart "-2323"; ### HERVIP10F_9q21.12 ### chr9 rmsk gene 69925311 69934098 . - . gene_id "HERVIP10F_9q21.12"; transcript_id "HERVIP10F_9q21.12"; locus "HERVIP10F_9q21.12"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0066"; model_cov "7727"; model_pct "99.9"; chr9 rmsk exon 69925311 69925809 2807 - . gene_id "HERVIP10F_9q21.12"; transcript_id "HERVIP10F_9q21.12"; locus "HERVIP10F_9q21.12"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0066"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr9 rmsk exon 69925815 69933599 39047 - . gene_id "HERVIP10F_9q21.12"; transcript_id "HERVIP10F_9q21.12"; locus "HERVIP10F_9q21.12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0066"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "6"; repStart "-4"; chr9 rmsk exon 69933614 69934098 2624 - . gene_id "HERVIP10F_9q21.12"; transcript_id "HERVIP10F_9q21.12"; locus "HERVIP10F_9q21.12"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0066"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-25"; ### MER4_9q21.12 ### chr9 rmsk gene 70654072 70660640 . + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0458"; model_cov "5424"; model_pct "82.2"; chr9 rmsk exon 70654072 70654686 5756 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "-5955"; repStart "35"; chr9 rmsk exon 70654972 70655026 5756 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "694"; repFamily "ERV1"; repLeft "-5904"; repStart "644"; chr9 rmsk exon 70655336 70655621 5756 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "-5574"; repStart "695"; chr9 rmsk exon 70655634 70656354 4010 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1763"; chr9 rmsk exon 70656593 70657497 3717 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2736"; chr9 rmsk exon 70657496 70660171 16489 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0458"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3836"; chr9 rmsk exon 70660180 70660640 3121 + . gene_id "MER4_9q21.12"; transcript_id "MER4_9q21.12"; locus "MER4_9q21.12"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0458"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP3B_9q21.13 ### chr9 rmsk gene 71508063 71509189 . - . gene_id "HUERSP3B_9q21.13"; transcript_id "HUERSP3B_9q21.13"; locus "HUERSP3B_9q21.13"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0081"; model_cov "1166"; model_pct "15.7"; chr9 rmsk exon 71508063 71509189 7839 - . gene_id "HUERSP3B_9q21.13"; transcript_id "HUERSP3B_9q21.13"; locus "HUERSP3B_9q21.13"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0081"; repClass "LTR"; repEnd "7235"; repFamily "ERV1"; repLeft "6069"; repStart "-183"; ### ERVLE_9q21.13a ### chr9 rmsk gene 71616175 71624136 . + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2285"; model_cov "3374"; model_pct "59.5"; chr9 rmsk exon 71616175 71616656 830 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "664"; repFamily "ERVL"; repLeft "-5003"; repStart "171"; chr9 rmsk exon 71618785 71619081 374 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "1082"; repFamily "ERVL"; repLeft "-4585"; repStart "775"; chr9 rmsk exon 71619211 71619492 754 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "1579"; repFamily "ERVL"; repLeft "-4088"; repStart "1291"; chr9 rmsk exon 71619679 71619827 329 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "-3692"; repStart "1815"; chr9 rmsk exon 71620367 71621650 2104 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "3631"; repFamily "ERVL"; repLeft "-2036"; repStart "2270"; chr9 rmsk exon 71621722 71621805 281 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "3819"; repFamily "ERVL"; repLeft "-1848"; repStart "3739"; chr9 rmsk exon 71622194 71622358 332 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-1115"; repStart "4382"; chr9 rmsk exon 71623257 71623305 883 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "4683"; repFamily "ERVL"; repLeft "-984"; repStart "4636"; chr9 rmsk exon 71623684 71624136 883 + . gene_id "ERVLE_9q21.13a"; transcript_id "ERVLE_9q21.13a"; locus "ERVLE_9q21.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2285"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "-515"; repStart "4684"; ### ERVLE_9q21.13b ### chr9 rmsk gene 71794050 71795363 . - . gene_id "ERVLE_9q21.13b"; transcript_id "ERVLE_9q21.13b"; locus "ERVLE_9q21.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2286"; model_cov "1266"; model_pct "22.3"; chr9 rmsk exon 71794050 71795363 2472 - . gene_id "ERVLE_9q21.13b"; transcript_id "ERVLE_9q21.13b"; locus "ERVLE_9q21.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2286"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "3391"; repStart "-1010"; ### ERVLE_9q21.13c ### chr9 rmsk gene 71989114 71995310 . + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2287"; model_cov "4906"; model_pct "86.6"; chr9 rmsk exon 71989114 71990055 456 + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2287"; repClass "LTR"; repEnd "1065"; repFamily "ERVL"; repLeft "-4602"; repStart "104"; chr9 rmsk exon 71990610 71992616 4808 + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2287"; repClass "LTR"; repEnd "3382"; repFamily "ERVL"; repLeft "-2285"; repStart "1226"; chr9 rmsk exon 71993046 71994020 4498 + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2287"; repClass "LTR"; repEnd "4459"; repFamily "ERVL"; repLeft "-1208"; repStart "3383"; chr9 rmsk exon 71994316 71994452 4498 + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2287"; repClass "LTR"; repEnd "4591"; repFamily "ERVL"; repLeft "-1076"; repStart "4460"; chr9 rmsk exon 71994759 71995310 4498 + . gene_id "ERVLE_9q21.13c"; transcript_id "ERVLE_9q21.13c"; locus "ERVLE_9q21.13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2287"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-493"; repStart "4592"; ### ERV316A3_9q21.13a ### chr9 rmsk gene 72034611 72037990 . + . gene_id "ERV316A3_9q21.13a"; transcript_id "ERV316A3_9q21.13a"; locus "ERV316A3_9q21.13a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1722"; model_cov "2738"; model_pct "52.4"; chr9 rmsk exon 72034611 72034737 266 + . gene_id "ERV316A3_9q21.13a"; transcript_id "ERV316A3_9q21.13a"; locus "ERV316A3_9q21.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1722"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-4945"; repStart "153"; chr9 rmsk exon 72035133 72036092 1364 + . gene_id "ERV316A3_9q21.13a"; transcript_id "ERV316A3_9q21.13a"; locus "ERV316A3_9q21.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1722"; repClass "LTR"; repEnd "1287"; repFamily "ERVL"; repLeft "-3939"; repStart "283"; chr9 rmsk exon 72036399 72036488 727 + . gene_id "ERV316A3_9q21.13a"; transcript_id "ERV316A3_9q21.13a"; locus "ERV316A3_9q21.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1722"; repClass "LTR"; repEnd "1377"; repFamily "ERVL"; repLeft "-3849"; repStart "1288"; chr9 rmsk exon 72036567 72037990 1029 + . gene_id "ERV316A3_9q21.13a"; transcript_id "ERV316A3_9q21.13a"; locus "ERV316A3_9q21.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1722"; repClass "LTR"; repEnd "3709"; repFamily "ERVL"; repLeft "-1517"; repStart "2192"; ### HERVL_9q21.13a ### chr9 rmsk gene 72486938 72488574 . + . gene_id "HERVL_9q21.13a"; transcript_id "HERVL_9q21.13a"; locus "HERVL_9q21.13a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0816"; model_cov "1131"; model_pct "20.0"; chr9 rmsk exon 72486938 72488073 9294 + . gene_id "HERVL_9q21.13a"; transcript_id "HERVL_9q21.13a"; locus "HERVL_9q21.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0816"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4523"; chr9 rmsk exon 72488074 72488451 3207 + . gene_id "HERVL_9q21.13a"; transcript_id "HERVL_9q21.13a"; locus "HERVL_9q21.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0816"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-54"; repStart "1"; chr9 rmsk exon 72488524 72488574 3207 + . gene_id "HERVL_9q21.13a"; transcript_id "HERVL_9q21.13a"; locus "HERVL_9q21.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0816"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "391"; ### ERVLE_9q21.13d ### chr9 rmsk gene 72623297 72624696 . - . gene_id "ERVLE_9q21.13d"; transcript_id "ERVLE_9q21.13d"; locus "ERVLE_9q21.13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2288"; model_cov "1499"; model_pct "26.5"; chr9 rmsk exon 72623297 72624288 1651 - . gene_id "ERVLE_9q21.13d"; transcript_id "ERVLE_9q21.13d"; locus "ERVLE_9q21.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2288"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "3865"; repStart "-644"; chr9 rmsk exon 72624363 72624696 624 - . gene_id "ERVLE_9q21.13d"; transcript_id "ERVLE_9q21.13d"; locus "ERVLE_9q21.13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2288"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "3557"; repStart "-1769"; ### ERVL_9q21.13 ### chr9 rmsk gene 73008864 73009670 . - . gene_id "ERVL_9q21.13"; transcript_id "ERVL_9q21.13"; locus "ERVL_9q21.13"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0266"; model_cov "584"; model_pct "10.1"; chr9 rmsk exon 73008864 73009159 794 - . gene_id "ERVL_9q21.13"; transcript_id "ERVL_9q21.13"; locus "ERVL_9q21.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0266"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "5174"; repStart "-272"; chr9 rmsk exon 73009431 73009670 794 - . gene_id "ERVL_9q21.13"; transcript_id "ERVL_9q21.13"; locus "ERVL_9q21.13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0266"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "4900"; repStart "-584"; ### ERV316A3_9q21.13b ### chr9 rmsk gene 73130115 73130716 . + . gene_id "ERV316A3_9q21.13b"; transcript_id "ERV316A3_9q21.13b"; locus "ERV316A3_9q21.13b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1723"; model_cov "601"; model_pct "11.5"; chr9 rmsk exon 73130115 73130716 1039 + . gene_id "ERV316A3_9q21.13b"; transcript_id "ERV316A3_9q21.13b"; locus "ERV316A3_9q21.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1723"; repClass "LTR"; repEnd "1397"; repFamily "ERVL"; repLeft "-3829"; repStart "796"; ### MER41_9q21.13a ### chr9 rmsk gene 73175440 73176791 . + . gene_id "MER41_9q21.13a"; transcript_id "MER41_9q21.13a"; locus "MER41_9q21.13a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0321"; model_cov "979"; model_pct "16.5"; chr9 rmsk exon 73175440 73175592 1198 + . gene_id "MER41_9q21.13a"; transcript_id "MER41_9q21.13a"; locus "MER41_9q21.13a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0321"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr9 rmsk exon 73175593 73175778 5861 + . gene_id "MER41_9q21.13a"; transcript_id "MER41_9q21.13a"; locus "MER41_9q21.13a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0321"; repClass "LTR"; repEnd "196"; repFamily "ERV1"; repLeft "-5750"; repStart "1"; chr9 rmsk exon 73176029 73176791 5861 + . gene_id "MER41_9q21.13a"; transcript_id "MER41_9q21.13a"; locus "MER41_9q21.13a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0321"; repClass "LTR"; repEnd "981"; repFamily "ERV1"; repLeft "-4965"; repStart "197"; ### ERV316A3_9q21.13c ### chr9 rmsk gene 73535271 73538129 . + . gene_id "ERV316A3_9q21.13c"; transcript_id "ERV316A3_9q21.13c"; locus "ERV316A3_9q21.13c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1724"; model_cov "2002"; model_pct "38.3"; chr9 rmsk exon 73535271 73535705 868 + . gene_id "ERV316A3_9q21.13c"; transcript_id "ERV316A3_9q21.13c"; locus "ERV316A3_9q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1724"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-1650"; repStart "3124"; chr9 rmsk exon 73536076 73537533 1021 + . gene_id "ERV316A3_9q21.13c"; transcript_id "ERV316A3_9q21.13c"; locus "ERV316A3_9q21.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1724"; repClass "LTR"; repEnd "5127"; repFamily "ERVL"; repLeft "-99"; repStart "3577"; chr9 rmsk exon 73537683 73538129 564 + . gene_id "ERV316A3_9q21.13c"; transcript_id "ERV316A3_9q21.13c"; locus "ERV316A3_9q21.13c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1724"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "-1"; repStart "49"; ### HERVL_9q21.13b ### chr9 rmsk gene 73721450 73723831 . + . gene_id "HERVL_9q21.13b"; transcript_id "HERVL_9q21.13b"; locus "HERVL_9q21.13b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0817"; model_cov "1870"; model_pct "33.1"; chr9 rmsk exon 73721450 73721983 2288 + . gene_id "HERVL_9q21.13b"; transcript_id "HERVL_9q21.13b"; locus "HERVL_9q21.13b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0817"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 73721984 73722959 6593 + . gene_id "HERVL_9q21.13b"; transcript_id "HERVL_9q21.13b"; locus "HERVL_9q21.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0817"; repClass "LTR"; repEnd "982"; repFamily "ERVL"; repLeft "-4672"; repStart "1"; chr9 rmsk exon 73722956 73723831 6077 + . gene_id "HERVL_9q21.13b"; transcript_id "HERVL_9q21.13b"; locus "HERVL_9q21.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0817"; repClass "LTR"; repEnd "5581"; repFamily "ERVL"; repLeft "-73"; repStart "4692"; ### ERVLE_9q21.13e ### chr9 rmsk gene 73812533 73813547 . + . gene_id "ERVLE_9q21.13e"; transcript_id "ERVLE_9q21.13e"; locus "ERVLE_9q21.13e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2290"; model_cov "782"; model_pct "13.8"; chr9 rmsk exon 73812533 73812856 668 + . gene_id "ERVLE_9q21.13e"; transcript_id "ERVLE_9q21.13e"; locus "ERVLE_9q21.13e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2290"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "-299"; repStart "19"; chr9 rmsk exon 73812858 73813368 1557 + . gene_id "ERVLE_9q21.13e"; transcript_id "ERVLE_9q21.13e"; locus "ERVLE_9q21.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2290"; repClass "LTR"; repEnd "4631"; repFamily "ERVL"; repLeft "-1036"; repStart "4097"; chr9 rmsk exon 73813365 73813547 543 + . gene_id "ERVLE_9q21.13e"; transcript_id "ERVLE_9q21.13e"; locus "ERVLE_9q21.13e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2290"; repClass "LTR"; repEnd "5396"; repFamily "ERVL"; repLeft "-271"; repStart "5148"; ### ERVLB4_9q21.13 ### chr9 rmsk gene 73963797 73968794 . + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1032"; model_cov "4351"; model_pct "76.1"; chr9 rmsk exon 73963797 73964312 2876 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-5"; repStart "-30"; chr9 rmsk exon 73964318 73964458 840 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "145"; repFamily "ERVL"; repLeft "-5569"; repStart "1"; chr9 rmsk exon 73964457 73965212 11096 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "2095"; repFamily "ERVL"; repLeft "-3619"; repStart "1309"; chr9 rmsk exon 73965296 73966782 11096 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "3646"; repFamily "ERVL"; repLeft "-2068"; repStart "2096"; chr9 rmsk exon 73966783 73968615 9659 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "3842"; chr9 rmsk exon 73968640 73968794 1874 + . gene_id "ERVLB4_9q21.13"; transcript_id "ERVLB4_9q21.13"; locus "ERVLB4_9q21.13"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1032"; repClass "LTR"; repEnd "165"; repFamily "ERVL"; repLeft "-355"; repStart "5"; ### HERVH_9q21.13a ### chr9 rmsk gene 74085583 74091436 . + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0759"; model_cov "4911"; model_pct "63.7"; chr9 rmsk exon 74085583 74086032 3483 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 74086035 74089062 19870 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr9 rmsk exon 74089057 74089204 870 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 74089195 74089699 3382 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 74089702 74090363 4244 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 74090361 74090582 1330 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr9 rmsk exon 74090581 74090960 2490 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 74090961 74091436 3292 + . gene_id "HERVH_9q21.13a"; transcript_id "HERVH_9q21.13a"; locus "HERVH_9q21.13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0759"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER34B_9q21.13 ### chr9 rmsk gene 74461109 74465721 . + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0179"; model_cov "3571"; model_pct "66.7"; chr9 rmsk exon 74461109 74461207 516 + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0179"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-305"; repStart "135"; chr9 rmsk exon 74461280 74462178 3475 + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0179"; repClass "LTR"; repEnd "3075"; repFamily "ERV1"; repLeft "-2281"; repStart "1874"; chr9 rmsk exon 74462220 74463425 3475 + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0179"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-2012"; repStart "2156"; chr9 rmsk exon 74464289 74465135 2047 + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0179"; repClass "LTR"; repEnd "4017"; repFamily "ERV1"; repLeft "-1339"; repStart "3119"; chr9 rmsk exon 74465449 74465721 851 + . gene_id "MER34B_9q21.13"; transcript_id "MER34B_9q21.13"; locus "MER34B_9q21.13"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0179"; repClass "LTR"; repEnd "4971"; repFamily "ERV1"; repLeft "-385"; repStart "4687"; ### HERVL40_9q21.13 ### chr9 rmsk gene 74979007 74979609 . + . gene_id "HERVL40_9q21.13"; transcript_id "HERVL40_9q21.13"; locus "HERVL40_9q21.13"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0264"; model_cov "621"; model_pct "11.2"; chr9 rmsk exon 74979007 74979609 2128 + . gene_id "HERVL40_9q21.13"; transcript_id "HERVL40_9q21.13"; locus "HERVL40_9q21.13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0264"; repClass "LTR"; repEnd "3315"; repFamily "ERVL"; repLeft "-2215"; repStart "2694"; ### HERVL18_9q21.13 ### chr9 rmsk gene 75235558 75239484 . - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0097"; model_cov "3303"; model_pct "54.6"; chr9 rmsk exon 75235558 75235908 2072 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 75235910 75236280 2368 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5672"; repStart "0"; chr9 rmsk exon 75236282 75237149 5849 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "4394"; repStart "-786"; chr9 rmsk exon 75237152 75237998 5340 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr9 rmsk exon 75238000 75238227 1172 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "2450"; repFamily "ERVL"; repLeft "2141"; repStart "-3597"; chr9 rmsk exon 75238226 75238274 419 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "1823"; repFamily "ERVL"; repLeft "1775"; repStart "-4224"; chr9 rmsk exon 75238272 75238505 1263 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "1380"; repStart "-4433"; chr9 rmsk exon 75238483 75238802 1662 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "967"; repFamily "ERVL"; repLeft "638"; repStart "-5080"; chr9 rmsk exon 75238806 75239088 1727 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "8"; repStart "-5757"; chr9 rmsk exon 75239102 75239484 2188 - . gene_id "HERVL18_9q21.13"; transcript_id "HERVL18_9q21.13"; locus "HERVL18_9q21.13"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0097"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_9q21.13b ### chr9 rmsk gene 75351145 75357575 . - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0760"; model_cov "5619"; model_pct "72.9"; chr9 rmsk exon 75351145 75351556 2638 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 75351557 75352720 7471 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr9 rmsk exon 75352694 75353304 4091 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr9 rmsk exon 75353301 75353480 1188 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chr9 rmsk exon 75353483 75353979 3003 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr9 rmsk exon 75353970 75354119 892 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 75354099 75357161 17426 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr9 rmsk exon 75357164 75357575 2670 - . gene_id "HERVH_9q21.13b"; transcript_id "HERVH_9q21.13b"; locus "HERVH_9q21.13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0760"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP2_9q21.13 ### chr9 rmsk gene 75644563 75649794 . - . gene_id "HUERSP2_9q21.13"; transcript_id "HUERSP2_9q21.13"; locus "HUERSP2_9q21.13"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0075"; model_cov "3011"; model_pct "97.5"; chr9 rmsk exon 75644563 75645534 5975 - . gene_id "HUERSP2_9q21.13"; transcript_id "HUERSP2_9q21.13"; locus "HUERSP2_9q21.13"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0075"; repClass "LTR"; repEnd "974"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr9 rmsk exon 75645537 75648716 9306 - . gene_id "HUERSP2_9q21.13"; transcript_id "HUERSP2_9q21.13"; locus "HUERSP2_9q21.13"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0075"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "75"; repStart "-2"; chr9 rmsk exon 75648817 75649794 5997 - . gene_id "HUERSP2_9q21.13"; transcript_id "HUERSP2_9q21.13"; locus "HUERSP2_9q21.13"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0075"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_9q21.13b ### chr9 rmsk gene 76028977 76030675 . - . gene_id "MER41_9q21.13b"; transcript_id "MER41_9q21.13b"; locus "MER41_9q21.13b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0322"; model_cov "2163"; model_pct "36.4"; chr9 rmsk exon 76028977 76030675 8112 - . gene_id "MER41_9q21.13b"; transcript_id "MER41_9q21.13b"; locus "MER41_9q21.13b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0322"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "3782"; repStart "-1"; ### HERVH_9q21.2 ### chr9 rmsk gene 78180694 78186819 . + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0761"; model_cov "5368"; model_pct "69.6"; chr9 rmsk exon 78180694 78181102 2895 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 78181105 78185060 16686 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr9 rmsk exon 78185057 78185247 1403 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4478"; chr9 rmsk exon 78185245 78185819 3879 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4575"; chr9 rmsk exon 78185821 78186031 1295 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 78186030 78186408 2350 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 78186409 78186819 3081 + . gene_id "HERVH_9q21.2"; transcript_id "HERVH_9q21.2"; locus "HERVH_9q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0761"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_9q21.2 ### chr9 rmsk gene 78386614 78389054 . + . gene_id "ERVLB4_9q21.2"; transcript_id "ERVLB4_9q21.2"; locus "ERVLB4_9q21.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1034"; model_cov "1970"; model_pct "34.5"; chr9 rmsk exon 78386614 78387112 2539 + . gene_id "ERVLB4_9q21.2"; transcript_id "ERVLB4_9q21.2"; locus "ERVLB4_9q21.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1034"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr9 rmsk exon 78387113 78389054 9618 + . gene_id "ERVLB4_9q21.2"; transcript_id "ERVLB4_9q21.2"; locus "ERVLB4_9q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1034"; repClass "LTR"; repEnd "1971"; repFamily "ERVL"; repLeft "-3743"; repStart "1"; ### ERVLE_9q21.31a ### chr9 rmsk gene 78689767 78691982 . - . gene_id "ERVLE_9q21.31a"; transcript_id "ERVLE_9q21.31a"; locus "ERVLE_9q21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2294"; model_cov "1600"; model_pct "28.2"; chr9 rmsk exon 78689767 78690394 2565 - . gene_id "ERVLE_9q21.31a"; transcript_id "ERVLE_9q21.31a"; locus "ERVLE_9q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2294"; repClass "LTR"; repEnd "5070"; repFamily "ERVL"; repLeft "4383"; repStart "-597"; chr9 rmsk exon 78690835 78691194 3139 - . gene_id "ERVLE_9q21.31a"; transcript_id "ERVLE_9q21.31a"; locus "ERVLE_9q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2294"; repClass "LTR"; repEnd "3863"; repFamily "ERVL"; repLeft "3477"; repStart "-1804"; chr9 rmsk exon 78691482 78691982 3139 - . gene_id "ERVLE_9q21.31a"; transcript_id "ERVLE_9q21.31a"; locus "ERVLE_9q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2294"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "2949"; repStart "-2191"; ### ERVLE_9q21.31b ### chr9 rmsk gene 79291319 79294259 . - . gene_id "ERVLE_9q21.31b"; transcript_id "ERVLE_9q21.31b"; locus "ERVLE_9q21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2295"; model_cov "2077"; model_pct "36.7"; chr9 rmsk exon 79291319 79292692 4074 - . gene_id "ERVLE_9q21.31b"; transcript_id "ERVLE_9q21.31b"; locus "ERVLE_9q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2295"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "3649"; repStart "-523"; chr9 rmsk exon 79293714 79294259 1592 - . gene_id "ERVLE_9q21.31b"; transcript_id "ERVLE_9q21.31b"; locus "ERVLE_9q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2295"; repClass "LTR"; repEnd "3479"; repFamily "ERVL"; repLeft "2897"; repStart "-2188"; ### ERVLE_9q21.31c ### chr9 rmsk gene 79887842 79889062 . - . gene_id "ERVLE_9q21.31c"; transcript_id "ERVLE_9q21.31c"; locus "ERVLE_9q21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2296"; model_cov "1293"; model_pct "22.8"; chr9 rmsk exon 79887842 79889062 3955 - . gene_id "ERVLE_9q21.31c"; transcript_id "ERVLE_9q21.31c"; locus "ERVLE_9q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2296"; repClass "LTR"; repEnd "1428"; repFamily "ERVL"; repLeft "135"; repStart "-4239"; ### HERVH_9q21.31a ### chr9 rmsk gene 80137295 80143148 . + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0762"; model_cov "4914"; model_pct "63.7"; chr9 rmsk exon 80137295 80137741 3605 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 80137744 80140829 19029 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 80140809 80140958 869 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 80140949 80141453 3243 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 80141456 80142117 4142 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 80142119 80142334 1307 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 80142335 80142711 2388 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 80142712 80143148 3379 + . gene_id "HERVH_9q21.31a"; transcript_id "HERVH_9q21.31a"; locus "HERVH_9q21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0762"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_9q21.31d ### chr9 rmsk gene 80548664 80550609 . + . gene_id "ERVLE_9q21.31d"; transcript_id "ERVLE_9q21.31d"; locus "ERVLE_9q21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2297"; model_cov "1621"; model_pct "28.6"; chr9 rmsk exon 80548664 80548865 1233 + . gene_id "ERVLE_9q21.31d"; transcript_id "ERVLE_9q21.31d"; locus "ERVLE_9q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2297"; repClass "LTR"; repEnd "1754"; repFamily "ERVL"; repLeft "-3913"; repStart "1545"; chr9 rmsk exon 80549216 80550609 1693 + . gene_id "ERVLE_9q21.31d"; transcript_id "ERVLE_9q21.31d"; locus "ERVLE_9q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2297"; repClass "LTR"; repEnd "3543"; repFamily "ERVL"; repLeft "-2124"; repStart "2131"; ### ERV316A3_9q21.31a ### chr9 rmsk gene 81000385 81001884 . - . gene_id "ERV316A3_9q21.31a"; transcript_id "ERV316A3_9q21.31a"; locus "ERV316A3_9q21.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1726"; model_cov "1642"; model_pct "31.4"; chr9 rmsk exon 81000385 81000601 432 - . gene_id "ERV316A3_9q21.31a"; transcript_id "ERV316A3_9q21.31a"; locus "ERV316A3_9q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1726"; repClass "LTR"; repEnd "3692"; repFamily "ERVL"; repLeft "3446"; repStart "-1534"; chr9 rmsk exon 81000602 81001884 2651 - . gene_id "ERV316A3_9q21.31a"; transcript_id "ERV316A3_9q21.31a"; locus "ERV316A3_9q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1726"; repClass "LTR"; repEnd "3124"; repFamily "ERVL"; repLeft "1728"; repStart "-2102"; ### HERVH_9q21.31b ### chr9 rmsk gene 81009084 81015281 . + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0763"; model_cov "5652"; model_pct "73.3"; chr9 rmsk exon 81009084 81009481 2549 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 81009484 81012425 16695 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 81012405 81012553 1000 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 81012544 81014276 8379 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr9 rmsk exon 81014257 81014493 1399 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr9 rmsk exon 81014492 81014871 2397 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 81014872 81015281 2264 + . gene_id "HERVH_9q21.31b"; transcript_id "HERVH_9q21.31b"; locus "HERVH_9q21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0763"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_9q21.31b ### chr9 rmsk gene 81128337 81134257 . + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1727"; model_cov "3707"; model_pct "70.9"; chr9 rmsk exon 81128337 81128782 930 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "8"; chr9 rmsk exon 81128860 81129270 660 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "760"; repFamily "ERVL"; repLeft "-4466"; repStart "327"; chr9 rmsk exon 81129311 81129902 1470 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "1421"; repFamily "ERVL"; repLeft "-3805"; repStart "824"; chr9 rmsk exon 81130347 81130552 1470 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "-3601"; repStart "1422"; chr9 rmsk exon 81130580 81130823 479 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "2021"; repFamily "ERVL"; repLeft "-3205"; repStart "1684"; chr9 rmsk exon 81131389 81131902 895 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "2245"; repFamily "ERVL"; repLeft "-2981"; repStart "1718"; chr9 rmsk exon 81131997 81132123 252 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-2697"; repStart "2405"; chr9 rmsk exon 81132312 81133802 2949 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "4244"; repFamily "ERVL"; repLeft "-982"; repStart "2758"; chr9 rmsk exon 81134000 81134257 506 + . gene_id "ERV316A3_9q21.31b"; transcript_id "ERV316A3_9q21.31b"; locus "ERV316A3_9q21.31b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1727"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "-190"; repStart "2"; ### ERVLE_9q21.31e ### chr9 rmsk gene 81148342 81149626 . - . gene_id "ERVLE_9q21.31e"; transcript_id "ERVLE_9q21.31e"; locus "ERVLE_9q21.31e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2300"; model_cov "1322"; model_pct "23.3"; chr9 rmsk exon 81148342 81149626 2157 - . gene_id "ERVLE_9q21.31e"; transcript_id "ERVLE_9q21.31e"; locus "ERVLE_9q21.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2300"; repClass "LTR"; repEnd "1600"; repFamily "ERVL"; repLeft "278"; repStart "-4067"; ### ERV316A3_9q21.31c ### chr9 rmsk gene 81211486 81213696 . + . gene_id "ERV316A3_9q21.31c"; transcript_id "ERV316A3_9q21.31c"; locus "ERV316A3_9q21.31c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1728"; model_cov "1389"; model_pct "26.6"; chr9 rmsk exon 81211486 81212110 1132 + . gene_id "ERV316A3_9q21.31c"; transcript_id "ERV316A3_9q21.31c"; locus "ERV316A3_9q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1728"; repClass "LTR"; repEnd "3496"; repFamily "ERVL"; repLeft "-1730"; repStart "2851"; chr9 rmsk exon 81212204 81212277 284 + . gene_id "ERV316A3_9q21.31c"; transcript_id "ERV316A3_9q21.31c"; locus "ERV316A3_9q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1728"; repClass "LTR"; repEnd "3746"; repFamily "ERVL"; repLeft "-1480"; repStart "3673"; chr9 rmsk exon 81212911 81213417 477 + . gene_id "ERV316A3_9q21.31c"; transcript_id "ERV316A3_9q21.31c"; locus "ERV316A3_9q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1728"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "-370"; repStart "4185"; chr9 rmsk exon 81213560 81213696 446 + . gene_id "ERV316A3_9q21.31c"; transcript_id "ERV316A3_9q21.31c"; locus "ERV316A3_9q21.31c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1728"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "-266"; repStart "51"; ### HERVL_9q21.31 ### chr9 rmsk gene 81268417 81271910 . - . gene_id "HERVL_9q21.31"; transcript_id "HERVL_9q21.31"; locus "HERVL_9q21.31"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0819"; model_cov "2591"; model_pct "45.8"; chr9 rmsk exon 81268417 81268862 3189 - . gene_id "HERVL_9q21.31"; transcript_id "HERVL_9q21.31"; locus "HERVL_9q21.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0819"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 81268863 81271453 20354 - . gene_id "HERVL_9q21.31"; transcript_id "HERVL_9q21.31"; locus "HERVL_9q21.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0819"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3063"; repStart "0"; chr9 rmsk exon 81271468 81271910 3041 - . gene_id "HERVL_9q21.31"; transcript_id "HERVL_9q21.31"; locus "HERVL_9q21.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0819"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_9q21.32a ### chr9 rmsk gene 82526388 82527390 . + . gene_id "ERVLE_9q21.32a"; transcript_id "ERVLE_9q21.32a"; locus "ERVLE_9q21.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2301"; model_cov "980"; model_pct "17.3"; chr9 rmsk exon 82526388 82527268 1839 + . gene_id "ERVLE_9q21.32a"; transcript_id "ERVLE_9q21.32a"; locus "ERVLE_9q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2301"; repClass "LTR"; repEnd "3590"; repFamily "ERVL"; repLeft "-2077"; repStart "2720"; chr9 rmsk exon 82527272 82527390 339 + . gene_id "ERVLE_9q21.32a"; transcript_id "ERVLE_9q21.32a"; locus "ERVLE_9q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2301"; repClass "LTR"; repEnd "4034"; repFamily "ERVL"; repLeft "-1633"; repStart "3924"; ### ERVLE_9q21.32b ### chr9 rmsk gene 82676920 82677940 . + . gene_id "ERVLE_9q21.32b"; transcript_id "ERVLE_9q21.32b"; locus "ERVLE_9q21.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2302"; model_cov "1014"; model_pct "17.9"; chr9 rmsk exon 82676920 82677940 3038 + . gene_id "ERVLE_9q21.32b"; transcript_id "ERVLE_9q21.32b"; locus "ERVLE_9q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2302"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1544"; repStart "3109"; ### HERVH_9q21.32a ### chr9 rmsk gene 82701562 82706286 . - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0764"; model_cov "4045"; model_pct "52.4"; chr9 rmsk exon 82701562 82702002 3610 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 82702003 82702260 1576 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7442"; repStart "0"; chr9 rmsk exon 82702261 82702411 1085 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "4639"; repFamily "ERV1"; repLeft "4489"; repStart "-3074"; chr9 rmsk exon 82702415 82702903 3054 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3505"; repStart "-3720"; chr9 rmsk exon 82702908 82703055 907 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 82703050 82705846 14231 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr9 rmsk exon 82705847 82706286 3549 - . gene_id "HERVH_9q21.32a"; transcript_id "HERVH_9q21.32a"; locus "HERVH_9q21.32a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0764"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_9q21.32c ### chr9 rmsk gene 82710380 82713418 . - . gene_id "ERVLE_9q21.32c"; transcript_id "ERVLE_9q21.32c"; locus "ERVLE_9q21.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2303"; model_cov "3114"; model_pct "54.9"; chr9 rmsk exon 82710380 82711720 1882 - . gene_id "ERVLE_9q21.32c"; transcript_id "ERVLE_9q21.32c"; locus "ERVLE_9q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2303"; repClass "LTR"; repEnd "5348"; repFamily "ERVL"; repLeft "3907"; repStart "-319"; chr9 rmsk exon 82711760 82712781 2573 - . gene_id "ERVLE_9q21.32c"; transcript_id "ERVLE_9q21.32c"; locus "ERVLE_9q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2303"; repClass "LTR"; repEnd "1678"; repFamily "ERVL"; repLeft "590"; repStart "-3989"; chr9 rmsk exon 82712820 82713418 2573 - . gene_id "ERVLE_9q21.32c"; transcript_id "ERVLE_9q21.32c"; locus "ERVLE_9q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2303"; repClass "LTR"; repEnd "589"; repFamily "ERVL"; repLeft "4"; repStart "-5078"; ### ERV316A3_9q21.32 ### chr9 rmsk gene 82776293 82777994 . - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1730"; model_cov "673"; model_pct "12.9"; chr9 rmsk exon 82776293 82776672 606 - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1730"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "52"; repStart "0"; chr9 rmsk exon 82776697 82776839 323 - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1730"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5096"; repStart "0"; chr9 rmsk exon 82776959 82777475 1014 - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1730"; repClass "LTR"; repEnd "5017"; repFamily "ERVL"; repLeft "4474"; repStart "-209"; chr9 rmsk exon 82777581 82777849 893 - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1730"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "185"; repStart "-30"; chr9 rmsk exon 82777886 82777994 296 - . gene_id "ERV316A3_9q21.32"; transcript_id "ERV316A3_9q21.32"; locus "ERV316A3_9q21.32"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1730"; repClass "LTR"; repEnd "116"; repFamily "ERVL"; repLeft "4"; repStart "-373"; ### HERVH_9q21.32b ### chr9 rmsk gene 82883733 82889489 . + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0765"; model_cov "4914"; model_pct "63.7"; chr9 rmsk exon 82883733 82884183 3301 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 82884186 82887164 19863 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 82887144 82887293 992 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 82887284 82887787 3241 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 82887790 82888447 4230 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 82888449 82888664 1297 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 82888665 82889040 2377 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 82889041 82889489 3455 + . gene_id "HERVH_9q21.32b"; transcript_id "HERVH_9q21.32b"; locus "HERVH_9q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0765"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL40_9q21.32 ### chr9 rmsk gene 83717647 83724536 . - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0266"; model_cov "3983"; model_pct "72.0"; chr9 rmsk exon 83717647 83717715 1382 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "1"; repStart "-394"; chr9 rmsk exon 83717716 83717958 1172 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "5278"; repStart "-3"; chr9 rmsk exon 83719550 83719669 7578 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "4670"; repFamily "ERVL"; repLeft "4551"; repStart "-860"; chr9 rmsk exon 83720007 83720408 7578 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "4550"; repFamily "ERVL"; repLeft "4133"; repStart "-980"; chr9 rmsk exon 83720723 83722319 7578 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "4132"; repFamily "ERVL"; repLeft "2529"; repStart "-1398"; chr9 rmsk exon 83722322 83723872 4897 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "17"; repStart "-3918"; chr9 rmsk exon 83723888 83723946 1414 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "415"; repStart "-2"; chr9 rmsk exon 83724251 83724536 1414 - . gene_id "HERVL40_9q21.32"; transcript_id "HERVL40_9q21.32"; locus "HERVL40_9q21.32"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0266"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "127"; repStart "-48"; ### HERVL_9q21.32 ### chr9 rmsk gene 83843916 83847951 . + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0820"; model_cov "3172"; model_pct "56.1"; chr9 rmsk exon 83843916 83844347 2599 + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0820"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr9 rmsk exon 83844376 83844415 2599 + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0820"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "406"; chr9 rmsk exon 83844416 83844772 2889 + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0820"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "-5290"; repStart "1"; chr9 rmsk exon 83844763 83847560 22653 + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0820"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2845"; chr9 rmsk exon 83847561 83847951 2765 + . gene_id "HERVL_9q21.32"; transcript_id "HERVL_9q21.32"; locus "HERVL_9q21.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0820"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### ERVLB4_9q21.33a ### chr9 rmsk gene 84643747 84648345 . - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1036"; model_cov "2886"; model_pct "50.5"; chr9 rmsk exon 84643747 84644304 2679 - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1036"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr9 rmsk exon 84644307 84644425 751 - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1036"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5595"; repStart "0"; chr9 rmsk exon 84644494 84644967 3004 - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1036"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "5055"; repStart "-188"; chr9 rmsk exon 84646041 84647002 5304 - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1036"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "4080"; repStart "-648"; chr9 rmsk exon 84647035 84648345 7225 - . gene_id "ERVLB4_9q21.33a"; transcript_id "ERVLB4_9q21.33a"; locus "ERVLB4_9q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1036"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "2826"; repStart "-1578"; ### HERVL_9q21.33a ### chr9 rmsk gene 85370157 85376998 . - . gene_id "HERVL_9q21.33a"; transcript_id "HERVL_9q21.33a"; locus "HERVL_9q21.33a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0821"; model_cov "5649"; model_pct "99.9"; chr9 rmsk exon 85370157 85370597 3528 - . gene_id "HERVL_9q21.33a"; transcript_id "HERVL_9q21.33a"; locus "HERVL_9q21.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0821"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 85370598 85375725 45835 - . gene_id "HERVL_9q21.33a"; transcript_id "HERVL_9q21.33a"; locus "HERVL_9q21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0821"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "530"; repStart "0"; chr9 rmsk exon 85376025 85376549 45835 - . gene_id "HERVL_9q21.33a"; transcript_id "HERVL_9q21.33a"; locus "HERVL_9q21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0821"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "4"; repStart "-5125"; chr9 rmsk exon 85376553 85376998 3396 - . gene_id "HERVL_9q21.33a"; transcript_id "HERVL_9q21.33a"; locus "HERVL_9q21.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0821"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_9q21.33b ### chr9 rmsk gene 85379819 85381531 . - . gene_id "ERVLB4_9q21.33b"; transcript_id "ERVLB4_9q21.33b"; locus "ERVLB4_9q21.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1037"; model_cov "715"; model_pct "12.5"; chr9 rmsk exon 85379819 85380123 908 - . gene_id "ERVLB4_9q21.33b"; transcript_id "ERVLB4_9q21.33b"; locus "ERVLB4_9q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1037"; repClass "LTR"; repEnd "2385"; repFamily "ERVL"; repLeft "2070"; repStart "-3329"; chr9 rmsk exon 85380226 85380380 289 - . gene_id "ERVLB4_9q21.33b"; transcript_id "ERVLB4_9q21.33b"; locus "ERVLB4_9q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1037"; repClass "LTR"; repEnd "1930"; repFamily "ERVL"; repLeft "1760"; repStart "-3784"; chr9 rmsk exon 85381302 85381531 793 - . gene_id "ERVLB4_9q21.33b"; transcript_id "ERVLB4_9q21.33b"; locus "ERVLB4_9q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1037"; repClass "LTR"; repEnd "1259"; repFamily "ERVL"; repLeft "1029"; repStart "-4455"; ### HERVH_9q21.33a ### chr9 rmsk gene 85458320 85466944 . + . gene_id "HERVH_9q21.33a"; transcript_id "HERVH_9q21.33a"; locus "HERVH_9q21.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0766"; model_cov "7712"; model_pct "100.0"; chr9 rmsk exon 85458320 85458773 3437 + . gene_id "HERVH_9q21.33a"; transcript_id "HERVH_9q21.33a"; locus "HERVH_9q21.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0766"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 85458776 85466495 32301 + . gene_id "HERVH_9q21.33a"; transcript_id "HERVH_9q21.33a"; locus "HERVH_9q21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0766"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 85466496 85466944 3657 + . gene_id "HERVH_9q21.33a"; transcript_id "HERVH_9q21.33a"; locus "HERVH_9q21.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0766"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_9q21.33 ### chr9 rmsk gene 85630235 85631584 . - . gene_id "ERV316A3_9q21.33"; transcript_id "ERV316A3_9q21.33"; locus "ERV316A3_9q21.33"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1734"; model_cov "935"; model_pct "17.9"; chr9 rmsk exon 85630235 85630355 307 - . gene_id "ERV316A3_9q21.33"; transcript_id "ERV316A3_9q21.33"; locus "ERV316A3_9q21.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1734"; repClass "LTR"; repEnd "5159"; repFamily "ERVL"; repLeft "5029"; repStart "-67"; chr9 rmsk exon 85630781 85631584 2418 - . gene_id "ERV316A3_9q21.33"; transcript_id "ERV316A3_9q21.33"; locus "ERV316A3_9q21.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1734"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "4235"; repStart "-186"; ### HERVL_9q21.33b ### chr9 rmsk gene 85775592 85779684 . - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0822"; model_cov "3172"; model_pct "56.1"; chr9 rmsk exon 85775592 85775987 2726 - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0822"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr9 rmsk exon 85775988 85778785 20821 - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0822"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2845"; repStart "0"; chr9 rmsk exon 85778776 85779132 2742 - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0822"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "1"; repStart "-5290"; chr9 rmsk exon 85779133 85779176 2705 - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0822"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr9 rmsk exon 85779266 85779684 2705 - . gene_id "HERVL_9q21.33b"; transcript_id "HERVL_9q21.33b"; locus "HERVL_9q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0822"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### HERVH_9q21.33b ### chr9 rmsk gene 85879231 85880934 . - . gene_id "HERVH_9q21.33b"; transcript_id "HERVH_9q21.33b"; locus "HERVH_9q21.33b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0767"; model_cov "1315"; model_pct "17.0"; chr9 rmsk exon 85879231 85879617 2465 - . gene_id "HERVH_9q21.33b"; transcript_id "HERVH_9q21.33b"; locus "HERVH_9q21.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0767"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 85879618 85880049 2808 - . gene_id "HERVH_9q21.33b"; transcript_id "HERVH_9q21.33b"; locus "HERVH_9q21.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0767"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr9 rmsk exon 85880054 85880934 6007 - . gene_id "HERVH_9q21.33b"; transcript_id "HERVH_9q21.33b"; locus "HERVH_9q21.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0767"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4135"; repStart "-2693"; ### HERVH_9q21.33c ### chr9 rmsk gene 85880935 85884510 . + . gene_id "HERVH_9q21.33c"; transcript_id "HERVH_9q21.33c"; locus "HERVH_9q21.33c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0768"; model_cov "3066"; model_pct "39.8"; chr9 rmsk exon 85880935 85881367 2341 + . gene_id "HERVH_9q21.33c"; transcript_id "HERVH_9q21.33c"; locus "HERVH_9q21.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0768"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 85881368 85881817 1926 + . gene_id "HERVH_9q21.33c"; transcript_id "HERVH_9q21.33c"; locus "HERVH_9q21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0768"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr9 rmsk exon 85881877 85884099 11799 + . gene_id "HERVH_9q21.33c"; transcript_id "HERVH_9q21.33c"; locus "HERVH_9q21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0768"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "800"; chr9 rmsk exon 85884093 85884510 2573 + . gene_id "HERVH_9q21.33c"; transcript_id "HERVH_9q21.33c"; locus "HERVH_9q21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0768"; repClass "LTR"; repEnd "3560"; repFamily "ERV1"; repLeft "-4153"; repStart "3139"; ### HERVH_9q21.33d ### chr9 rmsk gene 86146098 86147429 . + . gene_id "HERVH_9q21.33d"; transcript_id "HERVH_9q21.33d"; locus "HERVH_9q21.33d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0770"; model_cov "979"; model_pct "12.7"; chr9 rmsk exon 86146098 86146515 2245 + . gene_id "HERVH_9q21.33d"; transcript_id "HERVH_9q21.33d"; locus "HERVH_9q21.33d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0770"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 86146516 86147005 1152 + . gene_id "HERVH_9q21.33d"; transcript_id "HERVH_9q21.33d"; locus "HERVH_9q21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0770"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "-7191"; repStart "1"; chr9 rmsk exon 86146976 86147429 2485 + . gene_id "HERVH_9q21.33d"; transcript_id "HERVH_9q21.33d"; locus "HERVH_9q21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0770"; repClass "LTR"; repEnd "1258"; repFamily "ERV1"; repLeft "-6455"; repStart "800"; ### HERV9_9q21.33 ### chr9 rmsk gene 86147430 86156854 . - . gene_id "HERV9_9q21.33"; transcript_id "HERV9_9q21.33"; locus "HERV9_9q21.33"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0119"; model_cov "8387"; model_pct "99.4"; chr9 rmsk exon 86147430 86148446 5891 - . gene_id "HERV9_9q21.33"; transcript_id "HERV9_9q21.33"; locus "HERV9_9q21.33"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0119"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 86148447 86156796 70927 - . gene_id "HERV9_9q21.33"; transcript_id "HERV9_9q21.33"; locus "HERV9_9q21.33"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0119"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "49"; repStart "0"; chr9 rmsk exon 86156820 86156854 262 - . gene_id "HERV9_9q21.33"; transcript_id "HERV9_9q21.33"; locus "HERV9_9q21.33"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0119"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "654"; repStart "0"; ### HARLEQUIN_9q21.33 ### chr9 rmsk gene 86361186 86367515 . - . gene_id "HARLEQUIN_9q21.33"; transcript_id "HARLEQUIN_9q21.33"; locus "HARLEQUIN_9q21.33"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0118"; model_cov "6919"; model_pct "100.0"; chr9 rmsk exon 86361186 86361605 3132 - . gene_id "HARLEQUIN_9q21.33"; transcript_id "HARLEQUIN_9q21.33"; locus "HARLEQUIN_9q21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0118"; repClass "LTR"; repEnd "6879"; repFamily "ERV1"; repLeft "6459"; repStart "-17"; chr9 rmsk exon 86361629 86365567 18026 - . gene_id "HARLEQUIN_9q21.33"; transcript_id "HARLEQUIN_9q21.33"; locus "HARLEQUIN_9q21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0118"; repClass "LTR"; repEnd "5282"; repFamily "ERV1"; repLeft "743"; repStart "-1614"; chr9 rmsk exon 86365566 86366409 6680 - . gene_id "HARLEQUIN_9q21.33"; transcript_id "HARLEQUIN_9q21.33"; locus "HARLEQUIN_9q21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0118"; repClass "LTR"; repEnd "1990"; repFamily "ERV1"; repLeft "1151"; repStart "-4906"; chr9 rmsk exon 86366385 86367515 8161 - . gene_id "HARLEQUIN_9q21.33"; transcript_id "HARLEQUIN_9q21.33"; locus "HARLEQUIN_9q21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0118"; repClass "LTR"; repEnd "281"; repFamily "ERV1"; repLeft "-840"; repStart "-6615"; ### HERVH_9q21.33e ### chr9 rmsk gene 86586834 86589057 . - . gene_id "HERVH_9q21.33e"; transcript_id "HERVH_9q21.33e"; locus "HERVH_9q21.33e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0771"; model_cov "1803"; model_pct "23.4"; chr9 rmsk exon 86586834 86588585 9951 - . gene_id "HERVH_9q21.33e"; transcript_id "HERVH_9q21.33e"; locus "HERVH_9q21.33e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0771"; repClass "LTR"; repEnd "1804"; repFamily "ERV1"; repLeft "1"; repStart "-5909"; chr9 rmsk exon 86588586 86589057 4219 - . gene_id "HERVH_9q21.33e"; transcript_id "HERVH_9q21.33e"; locus "HERVH_9q21.33e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0771"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_9q21.33f ### chr9 rmsk gene 87410694 87416706 . + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0772"; model_cov "4914"; model_pct "63.7"; chr9 rmsk exon 87410694 87411146 3623 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 87411149 87414340 17538 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 87414320 87414469 990 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 87414460 87414962 3386 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3492"; chr9 rmsk exon 87414968 87415629 4506 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 87415631 87415846 1439 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 87415845 87416224 2567 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 87416225 87416706 3377 + . gene_id "HERVH_9q21.33f"; transcript_id "HERVH_9q21.33f"; locus "HERVH_9q21.33f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0772"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_9q21.33 ### chr9 rmsk gene 87433663 87437179 . - . gene_id "ERVLE_9q21.33"; transcript_id "ERVLE_9q21.33"; locus "ERVLE_9q21.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2306"; model_cov "1155"; model_pct "20.4"; chr9 rmsk exon 87433663 87434142 584 - . gene_id "ERVLE_9q21.33"; transcript_id "ERVLE_9q21.33"; locus "ERVLE_9q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2306"; repClass "LTR"; repEnd "3862"; repFamily "ERVL"; repLeft "3318"; repStart "-1805"; chr9 rmsk exon 87434160 87434341 605 - . gene_id "ERVLE_9q21.33"; transcript_id "ERVLE_9q21.33"; locus "ERVLE_9q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2306"; repClass "LTR"; repEnd "3255"; repFamily "ERVL"; repLeft "3060"; repStart "-2412"; chr9 rmsk exon 87434561 87434757 286 - . gene_id "ERVLE_9q21.33"; transcript_id "ERVLE_9q21.33"; locus "ERVLE_9q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2306"; repClass "LTR"; repEnd "2778"; repFamily "ERVL"; repLeft "2579"; repStart "-2889"; chr9 rmsk exon 87436964 87437179 314 - . gene_id "ERVLE_9q21.33"; transcript_id "ERVLE_9q21.33"; locus "ERVLE_9q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2306"; repClass "LTR"; repEnd "1438"; repFamily "ERVL"; repLeft "1221"; repStart "-4229"; ### ERVL_9q21.33 ### chr9 rmsk gene 87440710 87443900 . - . gene_id "ERVL_9q21.33"; transcript_id "ERVL_9q21.33"; locus "ERVL_9q21.33"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0269"; model_cov "2244"; model_pct "39.0"; chr9 rmsk exon 87440710 87441163 2762 - . gene_id "ERVL_9q21.33"; transcript_id "ERVL_9q21.33"; locus "ERVL_9q21.33"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0269"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "1"; repStart "-107"; chr9 rmsk exon 87441164 87441309 809 - . gene_id "ERVL_9q21.33"; transcript_id "ERVL_9q21.33"; locus "ERVL_9q21.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0269"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5612"; repStart "0"; chr9 rmsk exon 87442001 87443900 8467 - . gene_id "ERVL_9q21.33"; transcript_id "ERVL_9q21.33"; locus "ERVL_9q21.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0269"; repClass "LTR"; repEnd "5620"; repFamily "ERVL"; repLeft "3521"; repStart "-137"; ### HERVI_9q22.1 ### chr9 rmsk gene 88041509 88044802 . - . gene_id "HERVI_9q22.1"; transcript_id "HERVI_9q22.1"; locus "HERVI_9q22.1"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0020"; model_cov "2252"; model_pct "28.9"; chr9 rmsk exon 88041509 88042806 11908 - . gene_id "HERVI_9q22.1"; transcript_id "HERVI_9q22.1"; locus "HERVI_9q22.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0020"; repClass "LTR"; repEnd "2255"; repFamily "ERV1"; repLeft "955"; repStart "-5530"; chr9 rmsk exon 88043103 88043359 11908 - . gene_id "HERVI_9q22.1"; transcript_id "HERVI_9q22.1"; locus "HERVI_9q22.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0020"; repClass "LTR"; repEnd "954"; repFamily "ERV1"; repLeft "711"; repStart "-6831"; chr9 rmsk exon 88043651 88044315 11908 - . gene_id "HERVI_9q22.1"; transcript_id "HERVI_9q22.1"; locus "HERVI_9q22.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0020"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "1"; repStart "-7075"; chr9 rmsk exon 88044318 88044802 2927 - . gene_id "HERVI_9q22.1"; transcript_id "HERVI_9q22.1"; locus "HERVI_9q22.1"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0020"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "1"; repStart "-19"; ### MER4B_9q22.1 ### chr9 rmsk gene 88327080 88328374 . + . gene_id "MER4B_9q22.1"; transcript_id "MER4B_9q22.1"; locus "MER4B_9q22.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0262"; model_cov "1024"; model_pct "15.2"; chr9 rmsk exon 88327080 88327443 4634 + . gene_id "MER4B_9q22.1"; transcript_id "MER4B_9q22.1"; locus "MER4B_9q22.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0262"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-3317"; repStart "3084"; chr9 rmsk exon 88327743 88328374 4634 + . gene_id "MER4B_9q22.1"; transcript_id "MER4B_9q22.1"; locus "MER4B_9q22.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0262"; repClass "LTR"; repEnd "4109"; repFamily "ERV1"; repLeft "-2649"; repStart "3442"; ### ERVLE_9q22.1 ### chr9 rmsk gene 88399815 88400470 . + . gene_id "ERVLE_9q22.1"; transcript_id "ERVLE_9q22.1"; locus "ERVLE_9q22.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2308"; model_cov "642"; model_pct "11.3"; chr9 rmsk exon 88399815 88399894 446 + . gene_id "ERVLE_9q22.1"; transcript_id "ERVLE_9q22.1"; locus "ERVLE_9q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2308"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-5273"; repStart "315"; chr9 rmsk exon 88399921 88400470 1790 + . gene_id "ERVLE_9q22.1"; transcript_id "ERVLE_9q22.1"; locus "ERVLE_9q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2308"; repClass "LTR"; repEnd "1084"; repFamily "ERVL"; repLeft "-4583"; repStart "521"; ### MER41_9q22.1a ### chr9 rmsk gene 88686487 88691604 . + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0323"; model_cov "5788"; model_pct "97.3"; chr9 rmsk exon 88686487 88686618 988 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0323"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "423"; chr9 rmsk exon 88686619 88686705 329 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0323"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "1"; chr9 rmsk exon 88686715 88686771 309 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0323"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-5888"; repStart "1"; chr9 rmsk exon 88687276 88689421 4870 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0323"; repClass "LTR"; repEnd "2723"; repFamily "ERV1"; repLeft "-3223"; repStart "-1519"; chr9 rmsk exon 88689450 88690486 9331 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0323"; repClass "LTR"; repEnd "5383"; repFamily "ERV1"; repLeft "-563"; repStart "4339"; chr9 rmsk exon 88690801 88691153 9331 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0323"; repClass "LTR"; repEnd "5728"; repFamily "ERV1"; repLeft "-218"; repStart "5384"; chr9 rmsk exon 88691155 88691604 3048 + . gene_id "MER41_9q22.1a"; transcript_id "MER41_9q22.1a"; locus "MER41_9q22.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0323"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "14"; ### HERVW_9q22.1 ### chr9 rmsk gene 88940011 88944424 . - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0193"; model_cov "3705"; model_pct "43.0"; chr9 rmsk exon 88940011 88940335 2598 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr9 rmsk exon 88940336 88940626 2385 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8336"; repStart "0"; chr9 rmsk exon 88940646 88941264 5068 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "6023"; repFamily "ERV1"; repLeft "5405"; repStart "-2603"; chr9 rmsk exon 88941244 88942516 10595 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2481"; repStart "-4872"; chr9 rmsk exon 88942502 88943969 10999 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "1525"; repFamily "ERV1"; repLeft "1"; repStart "-7101"; chr9 rmsk exon 88943970 88944424 2261 - . gene_id "HERVW_9q22.1"; transcript_id "HERVW_9q22.1"; locus "HERVW_9q22.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0193"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### MER41_9q22.1b ### chr9 rmsk gene 89125477 89128334 . + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0324"; model_cov "2241"; model_pct "37.7"; chr9 rmsk exon 89125477 89126063 3928 + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0324"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 89126064 89126696 3515 + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0324"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "-5312"; repStart "1"; chr9 rmsk exon 89126675 89127294 2371 + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0324"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-5597"; repStart "-201"; chr9 rmsk exon 89127282 89127434 1042 + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0324"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1866"; chr9 rmsk exon 89127431 89128334 5528 + . gene_id "MER41_9q22.1b"; transcript_id "MER41_9q22.1b"; locus "MER41_9q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0324"; repClass "LTR"; repEnd "3074"; repFamily "ERV1"; repLeft "-2872"; repStart "2167"; ### MER41_9q22.1c ### chr9 rmsk gene 89133918 89136821 . + . gene_id "MER41_9q22.1c"; transcript_id "MER41_9q22.1c"; locus "MER41_9q22.1c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0325"; model_cov "2308"; model_pct "38.8"; chr9 rmsk exon 89133918 89134545 3471 + . gene_id "MER41_9q22.1c"; transcript_id "MER41_9q22.1c"; locus "MER41_9q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0325"; repClass "LTR"; repEnd "3692"; repFamily "ERV1"; repLeft "-2254"; repStart "3068"; chr9 rmsk exon 89134544 89136228 10931 + . gene_id "MER41_9q22.1c"; transcript_id "MER41_9q22.1c"; locus "MER41_9q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0325"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4260"; chr9 rmsk exon 89136231 89136821 3974 + . gene_id "MER41_9q22.1c"; transcript_id "MER41_9q22.1c"; locus "MER41_9q22.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0325"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_9q22.1d ### chr9 rmsk gene 89138165 89143533 . - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0326"; model_cov "3741"; model_pct "62.9"; chr9 rmsk exon 89138165 89138709 3798 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0326"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr9 rmsk exon 89138710 89139809 7350 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4833"; repStart "-2"; chr9 rmsk exon 89139804 89141062 7010 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "1898"; repStart "-2764"; chr9 rmsk exon 89141061 89141646 2450 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-41"; repStart "-5597"; chr9 rmsk exon 89141638 89142277 3832 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "851"; repFamily "ERV1"; repLeft "181"; repStart "-5095"; chr9 rmsk exon 89142704 89142888 977 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "186"; repFamily "ERV1"; repLeft "1"; repStart "-5760"; chr9 rmsk exon 89142898 89142974 298 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0326"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr9 rmsk exon 89142975 89143533 4039 - . gene_id "MER41_9q22.1d"; transcript_id "MER41_9q22.1d"; locus "MER41_9q22.1d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0326"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR19_9q22.2 ### chr9 rmsk gene 89295342 89297499 . + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0027"; model_cov "1290"; model_pct "23.1"; chr9 rmsk exon 89295342 89295802 3997 + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0027"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-117"; repStart "1"; chr9 rmsk exon 89296105 89296218 3997 + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0027"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "0"; repStart "464"; chr9 rmsk exon 89296219 89296505 5484 + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0027"; repClass "LTR"; repEnd "308"; repFamily "ERV1"; repLeft "-5278"; repStart "1"; chr9 rmsk exon 89296536 89297124 5484 + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0027"; repClass "LTR"; repEnd "920"; repFamily "ERV1"; repLeft "-4666"; repStart "309"; chr9 rmsk exon 89297123 89297499 2798 + . gene_id "LTR19_9q22.2"; transcript_id "LTR19_9q22.2"; locus "LTR19_9q22.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0027"; repClass "LTR"; repEnd "1968"; repFamily "ERV1"; repLeft "-3618"; repStart "1596"; ### LTR25_9q22.2 ### chr9 rmsk gene 89300169 89303780 . + . gene_id "LTR25_9q22.2"; transcript_id "LTR25_9q22.2"; locus "LTR25_9q22.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0077"; model_cov "2455"; model_pct "34.2"; chr9 rmsk exon 89300169 89300236 10371 + . gene_id "LTR25_9q22.2"; transcript_id "LTR25_9q22.2"; locus "LTR25_9q22.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0077"; repClass "LTR"; repEnd "4673"; repFamily "ERV1"; repLeft "-2515"; repStart "4604"; chr9 rmsk exon 89300557 89301093 10371 + . gene_id "LTR25_9q22.2"; transcript_id "LTR25_9q22.2"; locus "LTR25_9q22.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0077"; repClass "LTR"; repEnd "5203"; repFamily "ERV1"; repLeft "-1985"; repStart "4674"; chr9 rmsk exon 89301131 89302293 10371 + . gene_id "LTR25_9q22.2"; transcript_id "LTR25_9q22.2"; locus "LTR25_9q22.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0077"; repClass "LTR"; repEnd "6377"; repFamily "ERV1"; repLeft "-811"; repStart "5204"; chr9 rmsk exon 89302993 89303780 10371 + . gene_id "LTR25_9q22.2"; transcript_id "LTR25_9q22.2"; locus "LTR25_9q22.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0077"; repClass "LTR"; repEnd "6663"; repFamily "ERV1"; repLeft "-525"; repStart "5979"; ### ERVLB4_9q22.2a ### chr9 rmsk gene 89822743 89823717 . + . gene_id "ERVLB4_9q22.2a"; transcript_id "ERVLB4_9q22.2a"; locus "ERVLB4_9q22.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1039"; model_cov "1092"; model_pct "19.1"; chr9 rmsk exon 89822743 89823717 1361 + . gene_id "ERVLB4_9q22.2a"; transcript_id "ERVLB4_9q22.2a"; locus "ERVLB4_9q22.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1039"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "-429"; repStart "4193"; ### ERV316A3_9q22.2 ### chr9 rmsk gene 90017494 90019501 . + . gene_id "ERV316A3_9q22.2"; transcript_id "ERV316A3_9q22.2"; locus "ERV316A3_9q22.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1735"; model_cov "1513"; model_pct "29.0"; chr9 rmsk exon 90017494 90019089 2539 + . gene_id "ERV316A3_9q22.2"; transcript_id "ERV316A3_9q22.2"; locus "ERV316A3_9q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1735"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "3663"; chr9 rmsk exon 90019144 90019501 710 + . gene_id "ERV316A3_9q22.2"; transcript_id "ERV316A3_9q22.2"; locus "ERV316A3_9q22.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1735"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-49"; repStart "1"; ### HERVE_9q22.2a ### chr9 rmsk gene 90223643 90227704 . + . gene_id "HERVE_9q22.2a"; transcript_id "HERVE_9q22.2a"; locus "HERVE_9q22.2a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0094"; model_cov "4056"; model_pct "51.9"; chr9 rmsk exon 90223643 90227704 29461 + . gene_id "HERVE_9q22.2a"; transcript_id "HERVE_9q22.2a"; locus "HERVE_9q22.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0094"; repClass "LTR"; repEnd "5164"; repFamily "ERV1"; repLeft "-2649"; repStart "1108"; ### HERVH_9q22.2 ### chr9 rmsk gene 90412695 90418349 . + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0773"; model_cov "4906"; model_pct "63.6"; chr9 rmsk exon 90412695 90413144 3476 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 90413147 90415976 15381 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr9 rmsk exon 90415971 90416120 839 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 90416111 90416616 3072 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 90416619 90417279 4116 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 90417281 90417498 1267 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 90417499 90417868 2247 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 90417869 90418349 3344 + . gene_id "HERVH_9q22.2"; transcript_id "HERVH_9q22.2"; locus "HERVH_9q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0773"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVE_9q22.2b ### chr9 rmsk gene 90755224 90759266 . - . gene_id "HERVE_9q22.2b"; transcript_id "HERVE_9q22.2b"; locus "HERVE_9q22.2b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0095"; model_cov "4056"; model_pct "51.9"; chr9 rmsk exon 90755224 90759266 29243 - . gene_id "HERVE_9q22.2b"; transcript_id "HERVE_9q22.2b"; locus "HERVE_9q22.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0095"; repClass "LTR"; repEnd "5164"; repFamily "ERV1"; repLeft "1108"; repStart "-2649"; ### MER4B_9q22.2 ### chr9 rmsk gene 90779599 90782518 . - . gene_id "MER4B_9q22.2"; transcript_id "MER4B_9q22.2"; locus "MER4B_9q22.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0264"; model_cov "1338"; model_pct "19.8"; chr9 rmsk exon 90779599 90780182 2406 - . gene_id "MER4B_9q22.2"; transcript_id "MER4B_9q22.2"; locus "MER4B_9q22.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0264"; repClass "LTR"; repEnd "605"; repFamily "ERV1"; repLeft "-289"; repStart "-5"; chr9 rmsk exon 90780183 90780590 2439 - . gene_id "MER4B_9q22.2"; transcript_id "MER4B_9q22.2"; locus "MER4B_9q22.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0264"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6365"; repStart "0"; chr9 rmsk exon 90780983 90781790 5585 - . gene_id "MER4B_9q22.2"; transcript_id "MER4B_9q22.2"; locus "MER4B_9q22.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0264"; repClass "LTR"; repEnd "6317"; repFamily "ERV1"; repLeft "5510"; repStart "-441"; chr9 rmsk exon 90782381 90782518 5585 - . gene_id "MER4B_9q22.2"; transcript_id "MER4B_9q22.2"; locus "MER4B_9q22.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0264"; repClass "LTR"; repEnd "5509"; repFamily "ERV1"; repLeft "5371"; repStart "-1249"; ### HML4_9q22.2 ### chr9 rmsk gene 90902407 90906329 . + . gene_id "HML4_9q22.2"; transcript_id "HML4_9q22.2"; locus "HML4_9q22.2"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0012"; model_cov "3881"; model_pct "47.8"; chr9 rmsk exon 90902407 90903227 3418 + . gene_id "HML4_9q22.2"; transcript_id "HML4_9q22.2"; locus "HML4_9q22.2"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0012"; repClass "LTR"; repEnd "830"; repFamily "ERVK"; repLeft "-7286"; repStart "1"; chr9 rmsk exon 90903226 90904617 11054 + . gene_id "HML4_9q22.2"; transcript_id "HML4_9q22.2"; locus "HML4_9q22.2"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0012"; repClass "LTR"; repEnd "2150"; repFamily "ERVK"; repLeft "-5966"; repStart "720"; chr9 rmsk exon 90904718 90906293 11054 + . gene_id "HML4_9q22.2"; transcript_id "HML4_9q22.2"; locus "HML4_9q22.2"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0012"; repClass "LTR"; repEnd "3773"; repFamily "ERVK"; repLeft "-4343"; repStart "2151"; chr9 rmsk exon 90906295 90906329 236 + . gene_id "HML4_9q22.2"; transcript_id "HML4_9q22.2"; locus "HML4_9q22.2"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0012"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "973"; ### ERVLB4_9q22.2b ### chr9 rmsk gene 90916564 90918042 . + . gene_id "ERVLB4_9q22.2b"; transcript_id "ERVLB4_9q22.2b"; locus "ERVLB4_9q22.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1040"; model_cov "1039"; model_pct "18.2"; chr9 rmsk exon 90916564 90917560 5494 + . gene_id "ERVLB4_9q22.2b"; transcript_id "ERVLB4_9q22.2b"; locus "ERVLB4_9q22.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1040"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4675"; chr9 rmsk exon 90917561 90918042 2868 + . gene_id "ERVLB4_9q22.2b"; transcript_id "ERVLB4_9q22.2b"; locus "ERVLB4_9q22.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1040"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "-22"; repStart "1"; ### ERVLE_9q22.2 ### chr9 rmsk gene 90991449 90992575 . - . gene_id "ERVLE_9q22.2"; transcript_id "ERVLE_9q22.2"; locus "ERVLE_9q22.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2311"; model_cov "621"; model_pct "11.0"; chr9 rmsk exon 90991449 90991840 2049 - . gene_id "ERVLE_9q22.2"; transcript_id "ERVLE_9q22.2"; locus "ERVLE_9q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2311"; repClass "LTR"; repEnd "1063"; repFamily "ERVL"; repLeft "636"; repStart "-4604"; chr9 rmsk exon 90992379 90992575 2049 - . gene_id "ERVLE_9q22.2"; transcript_id "ERVLE_9q22.2"; locus "ERVLE_9q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2311"; repClass "LTR"; repEnd "635"; repFamily "ERVL"; repLeft "441"; repStart "-5032"; ### ERVLB4_9q22.2c ### chr9 rmsk gene 91003008 91003810 . - . gene_id "ERVLB4_9q22.2c"; transcript_id "ERVLB4_9q22.2c"; locus "ERVLB4_9q22.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1041"; model_cov "858"; model_pct "15.0"; chr9 rmsk exon 91003008 91003810 1959 - . gene_id "ERVLB4_9q22.2c"; transcript_id "ERVLB4_9q22.2c"; locus "ERVLB4_9q22.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1041"; repClass "LTR"; repEnd "2633"; repFamily "ERVL"; repLeft "1775"; repStart "-3081"; ### ERVLB4_9q22.31a ### chr9 rmsk gene 91466094 91467179 . + . gene_id "ERVLB4_9q22.31a"; transcript_id "ERVLB4_9q22.31a"; locus "ERVLB4_9q22.31a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1042"; model_cov "727"; model_pct "12.7"; chr9 rmsk exon 91466094 91466803 3587 + . gene_id "ERVLB4_9q22.31a"; transcript_id "ERVLB4_9q22.31a"; locus "ERVLB4_9q22.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1042"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4987"; chr9 rmsk exon 91466804 91467179 1464 + . gene_id "ERVLB4_9q22.31a"; transcript_id "ERVLB4_9q22.31a"; locus "ERVLB4_9q22.31a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1042"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "-31"; repStart "-141"; ### ERVLB4_9q22.31b ### chr9 rmsk gene 91547146 91551285 . - . gene_id "ERVLB4_9q22.31b"; transcript_id "ERVLB4_9q22.31b"; locus "ERVLB4_9q22.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1043"; model_cov "4280"; model_pct "74.9"; chr9 rmsk exon 91547146 91549691 15057 - . gene_id "ERVLB4_9q22.31b"; transcript_id "ERVLB4_9q22.31b"; locus "ERVLB4_9q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1043"; repClass "LTR"; repEnd "4976"; repFamily "ERVL"; repLeft "2423"; repStart "-738"; chr9 rmsk exon 91549689 91551285 4863 - . gene_id "ERVLB4_9q22.31b"; transcript_id "ERVLB4_9q22.31b"; locus "ERVLB4_9q22.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1043"; repClass "LTR"; repEnd "1728"; repFamily "ERVL"; repLeft "1"; repStart "-3986"; ### HERVW_9q22.31 ### chr9 rmsk gene 91980559 91982077 . + . gene_id "HERVW_9q22.31"; transcript_id "HERVW_9q22.31"; locus "HERVW_9q22.31"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0194"; model_cov "1205"; model_pct "14.0"; chr9 rmsk exon 91980559 91980898 2892 + . gene_id "HERVW_9q22.31"; transcript_id "HERVW_9q22.31"; locus "HERVW_9q22.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0194"; repClass "LTR"; repEnd "4550"; repFamily "ERV1"; repLeft "-4076"; repStart "4210"; chr9 rmsk exon 91980886 91981750 7281 + . gene_id "HERVW_9q22.31"; transcript_id "HERVW_9q22.31"; locus "HERVW_9q22.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0194"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "-4"; repStart "7757"; chr9 rmsk exon 91981754 91982077 2742 + . gene_id "HERVW_9q22.31"; transcript_id "HERVW_9q22.31"; locus "HERVW_9q22.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0194"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### ERVLB4_9q22.31c ### chr9 rmsk gene 91985419 91988334 . + . gene_id "ERVLB4_9q22.31c"; transcript_id "ERVLB4_9q22.31c"; locus "ERVLB4_9q22.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1044"; model_cov "3032"; model_pct "53.1"; chr9 rmsk exon 91985419 91988334 17466 + . gene_id "ERVLB4_9q22.31c"; transcript_id "ERVLB4_9q22.31c"; locus "ERVLB4_9q22.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1044"; repClass "LTR"; repEnd "5107"; repFamily "ERVL"; repLeft "-607"; repStart "2075"; ### HERVH_9q22.31a ### chr9 rmsk gene 92071698 92078223 . + . gene_id "HERVH_9q22.31a"; transcript_id "HERVH_9q22.31a"; locus "HERVH_9q22.31a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0774"; model_cov "5993"; model_pct "77.7"; chr9 rmsk exon 92071698 92072131 1734 + . gene_id "HERVH_9q22.31a"; transcript_id "HERVH_9q22.31a"; locus "HERVH_9q22.31a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0774"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "25"; chr9 rmsk exon 92072132 92072441 308 + . gene_id "HERVH_9q22.31a"; transcript_id "HERVH_9q22.31a"; locus "HERVH_9q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0774"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "-7336"; repStart "1"; chr9 rmsk exon 92072527 92078223 18382 + . gene_id "HERVH_9q22.31a"; transcript_id "HERVH_9q22.31a"; locus "HERVH_9q22.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0774"; repClass "LTR"; repEnd "6213"; repFamily "ERV1"; repLeft "-1500"; repStart "596"; ### ERVLE_9q22.31 ### chr9 rmsk gene 92223997 92225996 . + . gene_id "ERVLE_9q22.31"; transcript_id "ERVLE_9q22.31"; locus "ERVLE_9q22.31"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2314"; model_cov "1316"; model_pct "23.2"; chr9 rmsk exon 92223997 92224534 1681 + . gene_id "ERVLE_9q22.31"; transcript_id "ERVLE_9q22.31"; locus "ERVLE_9q22.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2314"; repClass "LTR"; repEnd "3904"; repFamily "ERVL"; repLeft "-1763"; repStart "3367"; chr9 rmsk exon 92224891 92225326 1981 + . gene_id "ERVLE_9q22.31"; transcript_id "ERVLE_9q22.31"; locus "ERVLE_9q22.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2314"; repClass "LTR"; repEnd "4453"; repFamily "ERVL"; repLeft "-1214"; repStart "4017"; chr9 rmsk exon 92225337 92225670 1029 + . gene_id "ERVLE_9q22.31"; transcript_id "ERVLE_9q22.31"; locus "ERVLE_9q22.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2314"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5324"; chr9 rmsk exon 92225671 92225996 452 + . gene_id "ERVLE_9q22.31"; transcript_id "ERVLE_9q22.31"; locus "ERVLE_9q22.31"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2314"; repClass "LTR"; repEnd "362"; repFamily "ERVL"; repLeft "-301"; repStart "1"; ### MER34B_9q22.31a ### chr9 rmsk gene 92231162 92232328 . + . gene_id "MER34B_9q22.31a"; transcript_id "MER34B_9q22.31a"; locus "MER34B_9q22.31a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0182"; model_cov "978"; model_pct "18.3"; chr9 rmsk exon 92231162 92231406 1400 + . gene_id "MER34B_9q22.31a"; transcript_id "MER34B_9q22.31a"; locus "MER34B_9q22.31a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0182"; repClass "LTR"; repEnd "1491"; repFamily "ERV1"; repLeft "-3865"; repStart "1247"; chr9 rmsk exon 92231728 92231922 1400 + . gene_id "MER34B_9q22.31a"; transcript_id "MER34B_9q22.31a"; locus "MER34B_9q22.31a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0182"; repClass "LTR"; repEnd "1655"; repFamily "ERV1"; repLeft "-3701"; repStart "1492"; chr9 rmsk exon 92231923 92232328 1173 + . gene_id "MER34B_9q22.31a"; transcript_id "MER34B_9q22.31a"; locus "MER34B_9q22.31a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0182"; repClass "LTR"; repEnd "2025"; repFamily "ERV1"; repLeft "-3331"; repStart "1454"; ### MER34B_9q22.31b ### chr9 rmsk gene 92232401 92233559 . + . gene_id "MER34B_9q22.31b"; transcript_id "MER34B_9q22.31b"; locus "MER34B_9q22.31b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0183"; model_cov "977"; model_pct "18.2"; chr9 rmsk exon 92232401 92232677 561 + . gene_id "MER34B_9q22.31b"; transcript_id "MER34B_9q22.31b"; locus "MER34B_9q22.31b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0183"; repClass "LTR"; repEnd "1897"; repFamily "ERV1"; repLeft "-3459"; repStart "1684"; chr9 rmsk exon 92232802 92233559 3074 + . gene_id "MER34B_9q22.31b"; transcript_id "MER34B_9q22.31b"; locus "MER34B_9q22.31b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0183"; repClass "LTR"; repEnd "3684"; repFamily "ERV1"; repLeft "-1672"; repStart "2920"; ### HERVL_9q22.31 ### chr9 rmsk gene 92352507 92354517 . - . gene_id "HERVL_9q22.31"; transcript_id "HERVL_9q22.31"; locus "HERVL_9q22.31"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0824"; model_cov "1624"; model_pct "28.7"; chr9 rmsk exon 92352507 92352928 2786 - . gene_id "HERVL_9q22.31"; transcript_id "HERVL_9q22.31"; locus "HERVL_9q22.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0824"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr9 rmsk exon 92352929 92354517 11744 - . gene_id "HERVL_9q22.31"; transcript_id "HERVL_9q22.31"; locus "HERVL_9q22.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0824"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4030"; repStart "0"; ### ERVLB4_9q22.31d ### chr9 rmsk gene 92779111 92783192 . + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1045"; model_cov "2651"; model_pct "46.4"; chr9 rmsk exon 92779111 92779464 1743 + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1045"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-19"; repStart "-161"; chr9 rmsk exon 92779546 92779605 4541 + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1045"; repClass "LTR"; repEnd "39"; repFamily "ERVL"; repLeft "-5675"; repStart "1"; chr9 rmsk exon 92779921 92780161 4541 + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1045"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-5433"; repStart "40"; chr9 rmsk exon 92780521 92780832 4541 + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1045"; repClass "LTR"; repEnd "585"; repFamily "ERVL"; repLeft "-5129"; repStart "282"; chr9 rmsk exon 92781264 92783192 8996 + . gene_id "ERVLB4_9q22.31d"; transcript_id "ERVLB4_9q22.31d"; locus "ERVLB4_9q22.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1045"; repClass "LTR"; repEnd "2655"; repFamily "ERVL"; repLeft "-3059"; repStart "586"; ### MER41_9q22.31 ### chr9 rmsk gene 92906104 92908866 . - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0327"; model_cov "2313"; model_pct "38.9"; chr9 rmsk exon 92906104 92906179 3229 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0327"; repClass "LTR"; repEnd "2670"; repFamily "ERV1"; repLeft "2597"; repStart "-3276"; chr9 rmsk exon 92906492 92906922 3229 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0327"; repClass "LTR"; repEnd "2596"; repFamily "ERV1"; repLeft "2167"; repStart "-3350"; chr9 rmsk exon 92906919 92907096 878 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0327"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1847"; repStart "-3929"; chr9 rmsk exon 92907075 92907735 3088 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0327"; repClass "LTR"; repEnd "1618"; repFamily "ERV1"; repLeft "624"; repStart "-4328"; chr9 rmsk exon 92908043 92908715 4359 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0327"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "-5298"; chr9 rmsk exon 92908716 92908866 1100 - . gene_id "MER41_9q22.31"; transcript_id "MER41_9q22.31"; locus "MER41_9q22.31"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0327"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "483"; repStart "0"; ### HERVFRD_9q22.31 ### chr9 rmsk gene 92983638 92988018 . - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0114"; model_cov "3386"; model_pct "47.0"; chr9 rmsk exon 92983638 92985415 5069 - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0114"; repClass "LTR"; repEnd "4541"; repFamily "ERV1"; repLeft "2788"; repStart "-2664"; chr9 rmsk exon 92985407 92985465 4543 - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0114"; repClass "LTR"; repEnd "1857"; repFamily "ERV1"; repLeft "1802"; repStart "-5348"; chr9 rmsk exon 92985778 92987150 5596 - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0114"; repClass "LTR"; repEnd "1801"; repFamily "ERV1"; repLeft "349"; repStart "-5404"; chr9 rmsk exon 92987462 92987589 5596 - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0114"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "222"; repStart "-6857"; chr9 rmsk exon 92987595 92988018 2560 - . gene_id "HERVFRD_9q22.31"; transcript_id "HERVFRD_9q22.31"; locus "HERVFRD_9q22.31"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0114"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "94"; repStart "-217"; ### HERVH_9q22.31b ### chr9 rmsk gene 93347588 93353344 . + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0775"; model_cov "4908"; model_pct "63.6"; chr9 rmsk exon 93347588 93348038 3543 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; chr9 rmsk exon 93348041 93351024 20434 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr9 rmsk exon 93351004 93351153 961 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 93351158 93351649 3317 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3505"; chr9 rmsk exon 93351637 93352302 4471 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4482"; chr9 rmsk exon 93352304 93352521 1455 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 93352520 93352899 2557 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 93352900 93353344 3431 + . gene_id "HERVH_9q22.31b"; transcript_id "HERVH_9q22.31b"; locus "HERVH_9q22.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0775"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_9q22.31a ### chr9 rmsk gene 93356412 93359864 . + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0462"; model_cov "2535"; model_pct "38.4"; chr9 rmsk exon 93356412 93356862 3070 + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0462"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 93356865 93357409 2864 + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0462"; repClass "LTR"; repEnd "588"; repFamily "ERV1"; repLeft "-6010"; repStart "1"; chr9 rmsk exon 93357405 93358287 4084 + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0462"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "-5609"; repStart "39"; chr9 rmsk exon 93358348 93359031 4487 + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0462"; repClass "LTR"; repEnd "2481"; repFamily "ERV1"; repLeft "-4117"; repStart "1763"; chr9 rmsk exon 93359589 93359864 1209 + . gene_id "MER4_9q22.31a"; transcript_id "MER4_9q22.31a"; locus "MER4_9q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0462"; repClass "LTR"; repEnd "3017"; repFamily "ERV1"; repLeft "-3581"; repStart "2737"; ### MER4_9q22.31b ### chr9 rmsk gene 93359945 93362424 . + . gene_id "MER4_9q22.31b"; transcript_id "MER4_9q22.31b"; locus "MER4_9q22.31b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0463"; model_cov "1892"; model_pct "28.7"; chr9 rmsk exon 93359945 93360153 960 + . gene_id "MER4_9q22.31b"; transcript_id "MER4_9q22.31b"; locus "MER4_9q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0463"; repClass "LTR"; repEnd "2071"; repFamily "ERV1"; repLeft "-4527"; repStart "1898"; chr9 rmsk exon 93360157 93360210 10197 + . gene_id "MER4_9q22.31b"; transcript_id "MER4_9q22.31b"; locus "MER4_9q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0463"; repClass "LTR"; repEnd "3978"; repFamily "ERV1"; repLeft "-2620"; repStart "3918"; chr9 rmsk exon 93360501 93361608 10197 + . gene_id "MER4_9q22.31b"; transcript_id "MER4_9q22.31b"; locus "MER4_9q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0463"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "-1492"; repStart "3979"; chr9 rmsk exon 93361913 93362424 10197 + . gene_id "MER4_9q22.31b"; transcript_id "MER4_9q22.31b"; locus "MER4_9q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0463"; repClass "LTR"; repEnd "5639"; repFamily "ERV1"; repLeft "-959"; repStart "5107"; ### ERVLB4_9q22.31e ### chr9 rmsk gene 93368047 93370458 . - . gene_id "ERVLB4_9q22.31e"; transcript_id "ERVLB4_9q22.31e"; locus "ERVLB4_9q22.31e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1046"; model_cov "602"; model_pct "10.5"; chr9 rmsk exon 93368047 93368438 2752 - . gene_id "ERVLB4_9q22.31e"; transcript_id "ERVLB4_9q22.31e"; locus "ERVLB4_9q22.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1046"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "1343"; repStart "-3984"; chr9 rmsk exon 93368735 93368862 2752 - . gene_id "ERVLB4_9q22.31e"; transcript_id "ERVLB4_9q22.31e"; locus "ERVLB4_9q22.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1046"; repClass "LTR"; repEnd "1342"; repFamily "ERVL"; repLeft "1216"; repStart "-4372"; chr9 rmsk exon 93370369 93370458 465 - . gene_id "ERVLB4_9q22.31e"; transcript_id "ERVLB4_9q22.31e"; locus "ERVLB4_9q22.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1046"; repClass "LTR"; repEnd "1241"; repFamily "ERVL"; repLeft "1152"; repStart "-4473"; ### HERVL18_9q22.31 ### chr9 rmsk gene 93391121 93393828 . - . gene_id "HERVL18_9q22.31"; transcript_id "HERVL18_9q22.31"; locus "HERVL18_9q22.31"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0098"; model_cov "2388"; model_pct "39.5"; chr9 rmsk exon 93391121 93391450 1446 - . gene_id "HERVL18_9q22.31"; transcript_id "HERVL18_9q22.31"; locus "HERVL18_9q22.31"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0098"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 93391452 93393828 16093 - . gene_id "HERVL18_9q22.31"; transcript_id "HERVL18_9q22.31"; locus "HERVL18_9q22.31"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0098"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "3659"; repStart "0"; ### HML3_9q22.31 ### chr9 rmsk gene 93751064 93755813 . - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0148"; model_cov "3722"; model_pct "61.8"; chr9 rmsk exon 93751064 93751574 4545 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr9 rmsk exon 93751576 93752941 11179 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4652"; repStart "0"; chr9 rmsk exon 93752931 93753072 908 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "3843"; repFamily "ERVK"; repLeft "3711"; repStart "-2178"; chr9 rmsk exon 93753055 93754731 14013 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1125"; repStart "-3223"; chr9 rmsk exon 93754733 93755268 4148 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "32"; repStart "-5441"; chr9 rmsk exon 93755301 93755813 4349 - . gene_id "HML3_9q22.31"; transcript_id "HML3_9q22.31"; locus "HML3_9q22.31"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0148"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_9q22.32 ### chr9 rmsk gene 93969545 93974319 . + . gene_id "HERVL_9q22.32"; transcript_id "HERVL_9q22.32"; locus "HERVL_9q22.32"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0825"; model_cov "2174"; model_pct "38.5"; chr9 rmsk exon 93969545 93969661 16646 + . gene_id "HERVL_9q22.32"; transcript_id "HERVL_9q22.32"; locus "HERVL_9q22.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0825"; repClass "LTR"; repEnd "116"; repFamily "ERVL"; repLeft "-5538"; repStart "1"; chr9 rmsk exon 93969970 93970944 16646 + . gene_id "HERVL_9q22.32"; transcript_id "HERVL_9q22.32"; locus "HERVL_9q22.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0825"; repClass "LTR"; repEnd "1090"; repFamily "ERVL"; repLeft "-4564"; repStart "117"; chr9 rmsk exon 93973235 93974319 16646 + . gene_id "HERVL_9q22.32"; transcript_id "HERVL_9q22.32"; locus "HERVL_9q22.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0825"; repClass "LTR"; repEnd "2177"; repFamily "ERVL"; repLeft "-3477"; repStart "1091"; ### ERVLE_9q22.32 ### chr9 rmsk gene 93995647 94001870 . - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2316"; model_cov "5337"; model_pct "94.2"; chr9 rmsk exon 93995647 93997586 8644 - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2316"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "3671"; repStart "-1"; chr9 rmsk exon 93997997 93998765 8644 - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2316"; repClass "LTR"; repEnd "3670"; repFamily "ERVL"; repLeft "2905"; repStart "-1997"; chr9 rmsk exon 93999306 93999997 2838 - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2316"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "2181"; repStart "-2801"; chr9 rmsk exon 94000001 94000109 540 - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2316"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "2063"; repStart "-3495"; chr9 rmsk exon 94000174 94001870 3651 - . gene_id "ERVLE_9q22.32"; transcript_id "ERVLE_9q22.32"; locus "ERVLE_9q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2316"; repClass "LTR"; repEnd "2067"; repFamily "ERVL"; repLeft "284"; repStart "-3600"; ### ERVLB4_9q22.32 ### chr9 rmsk gene 94252358 94254294 . + . gene_id "ERVLB4_9q22.32"; transcript_id "ERVLB4_9q22.32"; locus "ERVLB4_9q22.32"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1049"; model_cov "1192"; model_pct "20.9"; chr9 rmsk exon 94252358 94252570 2393 + . gene_id "ERVLB4_9q22.32"; transcript_id "ERVLB4_9q22.32"; locus "ERVLB4_9q22.32"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1049"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "-297"; repStart "1"; chr9 rmsk exon 94252814 94253119 2393 + . gene_id "ERVLB4_9q22.32"; transcript_id "ERVLB4_9q22.32"; locus "ERVLB4_9q22.32"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1049"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "219"; chr9 rmsk exon 94253120 94254294 6439 + . gene_id "ERVLB4_9q22.32"; transcript_id "ERVLB4_9q22.32"; locus "ERVLB4_9q22.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1049"; repClass "LTR"; repEnd "1193"; repFamily "ERVL"; repLeft "-4521"; repStart "1"; ### PABLA_9q22.32 ### chr9 rmsk gene 94265595 94270221 . - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0091"; model_cov "2534"; model_pct "50.5"; chr9 rmsk exon 94265595 94266271 3816 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "1"; repStart "-145"; chr9 rmsk exon 94266272 94266913 4728 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4375"; repStart "0"; chr9 rmsk exon 94267076 94267859 7941 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "4384"; repFamily "ERV1"; repLeft "3602"; repStart "-631"; chr9 rmsk exon 94268170 94268507 7941 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "3256"; repStart "-1414"; chr9 rmsk exon 94268807 94269588 5298 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "769"; repFamily "ERV1"; repLeft "2"; repStart "-4246"; chr9 rmsk exon 94269589 94270221 4995 - . gene_id "PABLA_9q22.32"; transcript_id "PABLA_9q22.32"; locus "PABLA_9q22.32"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0091"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_9q22.32 ### chr9 rmsk gene 94539871 94545509 . + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0776"; model_cov "4893"; model_pct "63.4"; chr9 rmsk exon 94539871 94540297 3465 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 94540300 94543214 20303 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr9 rmsk exon 94543209 94543353 866 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 94543358 94543846 3363 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr9 rmsk exon 94543849 94544498 4239 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 94544500 94544716 1494 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 94544717 94545089 2602 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 94545091 94545509 3405 + . gene_id "HERVH_9q22.32"; transcript_id "HERVH_9q22.32"; locus "HERVH_9q22.32"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0776"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### LTR57_9q22.32 ### chr9 rmsk gene 94577573 94578558 . + . gene_id "LTR57_9q22.32"; transcript_id "LTR57_9q22.32"; locus "LTR57_9q22.32"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0106"; model_cov "983"; model_pct "18.4"; chr9 rmsk exon 94577573 94578558 4107 + . gene_id "LTR57_9q22.32"; transcript_id "LTR57_9q22.32"; locus "LTR57_9q22.32"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0106"; repClass "LTR"; repEnd "1591"; repFamily "ERVL"; repLeft "-3752"; repStart "608"; ### PRIMA41_9q22.32 ### chr9 rmsk gene 94813869 94816971 . - . gene_id "PRIMA41_9q22.32"; transcript_id "PRIMA41_9q22.32"; locus "PRIMA41_9q22.32"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0082"; model_cov "2662"; model_pct "34.3"; chr9 rmsk exon 94813869 94814056 648 - . gene_id "PRIMA41_9q22.32"; transcript_id "PRIMA41_9q22.32"; locus "PRIMA41_9q22.32"; repName "MER41E"; geneRegion "ltr"; locid "PRIMA41-int_0082"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "337"; repStart "-38"; chr9 rmsk exon 94814204 94816677 1823 - . gene_id "PRIMA41_9q22.32"; transcript_id "PRIMA41_9q22.32"; locus "PRIMA41_9q22.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0082"; repClass "LTR"; repEnd "4013"; repFamily "ERV1"; repLeft "1536"; repStart "-3743"; chr9 rmsk exon 94816780 94816971 418 - . gene_id "PRIMA41_9q22.32"; transcript_id "PRIMA41_9q22.32"; locus "PRIMA41_9q22.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0082"; repClass "LTR"; repEnd "2564"; repFamily "ERV1"; repLeft "2379"; repStart "-5192"; ### MER4_9q22.32 ### chr9 rmsk gene 95323682 95332636 . - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0464"; model_cov "6430"; model_pct "97.5"; chr9 rmsk exon 95323682 95324154 3532 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0464"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 95324156 95326827 15760 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "3837"; repStart "0"; chr9 rmsk exon 95326827 95327050 3419 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3421"; repStart "-2917"; chr9 rmsk exon 95327342 95327994 3419 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "3420"; repFamily "ERV1"; repLeft "2738"; repStart "-3178"; chr9 rmsk exon 95328235 95328304 3813 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2430"; repStart "-4103"; chr9 rmsk exon 95328595 95329032 3813 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "2429"; repFamily "ERV1"; repLeft "1963"; repStart "-4169"; chr9 rmsk exon 95329345 95329545 3813 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "1962"; repFamily "ERV1"; repLeft "1763"; repStart "-4636"; chr9 rmsk exon 95329601 95329690 1263 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "895"; repStart "-5614"; chr9 rmsk exon 95329989 95330120 1263 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "894"; repFamily "ERV1"; repLeft "762"; repStart "-5704"; chr9 rmsk exon 95330141 95330812 3887 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "29"; repStart "-5912"; chr9 rmsk exon 95330812 95331162 1213 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2121"; repStart "-4107"; chr9 rmsk exon 95331227 95331305 326 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-714"; repStart "-7237"; chr9 rmsk exon 95331312 95331885 2267 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0464"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "-5923"; chr9 rmsk exon 95331889 95332165 2683 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0464"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "185"; repStart "0"; chr9 rmsk exon 95332476 95332636 2683 - . gene_id "MER4_9q22.32"; transcript_id "MER4_9q22.32"; locus "MER4_9q22.32"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0464"; repClass "LTR"; repEnd "184"; repFamily "ERV1"; repLeft "24"; repStart "-288"; ### MER41_9q22.32 ### chr9 rmsk gene 96280620 96286406 . + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0330"; model_cov "4292"; model_pct "72.2"; chr9 rmsk exon 96280620 96281158 4130 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0330"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 96281159 96281234 302 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "1"; chr9 rmsk exon 96281244 96281900 3892 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "1"; chr9 rmsk exon 96281876 96282992 10555 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "4057"; repFamily "ERV1"; repLeft "-1889"; repStart "2349"; chr9 rmsk exon 96283305 96283946 12920 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "4581"; repFamily "ERV1"; repLeft "-1365"; repStart "4091"; chr9 rmsk exon 96284241 96284841 12920 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "-762"; repStart "4582"; chr9 rmsk exon 96285138 96285888 12920 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0330"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5185"; chr9 rmsk exon 96285889 96286061 4014 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0330"; repClass "LTR"; repEnd "171"; repFamily "ERV1"; repLeft "-383"; repStart "1"; chr9 rmsk exon 96286359 96286406 4014 + . gene_id "MER41_9q22.32"; transcript_id "MER41_9q22.32"; locus "MER41_9q22.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0330"; repClass "LTR"; repEnd "204"; repFamily "ERV1"; repLeft "-350"; repStart "172"; ### ERVLB4_9q22.33a ### chr9 rmsk gene 96659041 96662654 . - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1051"; model_cov "1898"; model_pct "33.2"; chr9 rmsk exon 96659041 96659052 1925 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "416"; repStart "-37"; chr9 rmsk exon 96659353 96659733 1925 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "3"; repStart "-49"; chr9 rmsk exon 96659734 96659865 9250 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5593"; repStart "-1"; chr9 rmsk exon 96660164 96661162 9250 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "5592"; repFamily "ERVL"; repLeft "4619"; repStart "-122"; chr9 rmsk exon 96661749 96662459 9250 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "4618"; repFamily "ERVL"; repLeft "3871"; repStart "-1096"; chr9 rmsk exon 96662471 96662529 270 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "454"; repStart "-5202"; chr9 rmsk exon 96662542 96662654 696 - . gene_id "ERVLB4_9q22.33a"; transcript_id "ERVLB4_9q22.33a"; locus "ERVLB4_9q22.33a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1051"; repClass "LTR"; repEnd "113"; repFamily "ERVL"; repLeft "1"; repStart "-351"; ### ERVLB4_9q22.33b ### chr9 rmsk gene 96895025 96897095 . + . gene_id "ERVLB4_9q22.33b"; transcript_id "ERVLB4_9q22.33b"; locus "ERVLB4_9q22.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1052"; model_cov "2158"; model_pct "37.8"; chr9 rmsk exon 96895025 96897095 11415 + . gene_id "ERVLB4_9q22.33b"; transcript_id "ERVLB4_9q22.33b"; locus "ERVLB4_9q22.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1052"; repClass "LTR"; repEnd "3464"; repFamily "ERVL"; repLeft "-2250"; repStart "1306"; ### ERVLB4_9q22.33c ### chr9 rmsk gene 97028132 97028814 . + . gene_id "ERVLB4_9q22.33c"; transcript_id "ERVLB4_9q22.33c"; locus "ERVLB4_9q22.33c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1053"; model_cov "702"; model_pct "12.3"; chr9 rmsk exon 97028132 97028814 3836 + . gene_id "ERVLB4_9q22.33c"; transcript_id "ERVLB4_9q22.33c"; locus "ERVLB4_9q22.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1053"; repClass "LTR"; repEnd "4163"; repFamily "ERVL"; repLeft "-1551"; repStart "3461"; ### HERVH_9q22.33a ### chr9 rmsk gene 97214494 97220014 . + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0777"; model_cov "4517"; model_pct "58.6"; chr9 rmsk exon 97214494 97214965 3092 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 97214968 97216579 9076 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "1546"; repFamily "ERV1"; repLeft "-6167"; repStart "1"; chr9 rmsk exon 97216576 97218235 11089 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1318"; chr9 rmsk exon 97218230 97218379 894 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 97218384 97218523 879 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "-4069"; repStart "3505"; chr9 rmsk exon 97218526 97218932 2486 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4743"; chr9 rmsk exon 97218934 97219151 1286 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 97219152 97219532 2358 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr9 rmsk exon 97219533 97220014 3194 + . gene_id "HERVH_9q22.33a"; transcript_id "HERVH_9q22.33a"; locus "HERVH_9q22.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0777"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_9q22.33d ### chr9 rmsk gene 97300261 97303836 . - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1055"; model_cov "2928"; model_pct "51.2"; chr9 rmsk exon 97300261 97300418 5622 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "3600"; repFamily "ERVL"; repLeft "3459"; repStart "-2114"; chr9 rmsk exon 97300445 97301242 5622 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "3458"; repFamily "ERVL"; repLeft "2667"; repStart "-2256"; chr9 rmsk exon 97301235 97301632 2357 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "1997"; repFamily "ERVL"; repLeft "1595"; repStart "-3717"; chr9 rmsk exon 97301633 97301736 552 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "306"; repStart "-106"; chr9 rmsk exon 97301740 97303303 8225 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "1"; repStart "-4119"; chr9 rmsk exon 97303304 97303836 2869 - . gene_id "ERVLB4_9q22.33d"; transcript_id "ERVLB4_9q22.33d"; locus "ERVLB4_9q22.33d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1055"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_9q22.33e ### chr9 rmsk gene 97524460 97526188 . - . gene_id "ERVLB4_9q22.33e"; transcript_id "ERVLB4_9q22.33e"; locus "ERVLB4_9q22.33e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1056"; model_cov "1165"; model_pct "20.4"; chr9 rmsk exon 97524460 97524497 2325 - . gene_id "ERVLB4_9q22.33e"; transcript_id "ERVLB4_9q22.33e"; locus "ERVLB4_9q22.33e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1056"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "521"; repStart "0"; chr9 rmsk exon 97524538 97525021 2325 - . gene_id "ERVLB4_9q22.33e"; transcript_id "ERVLB4_9q22.33e"; locus "ERVLB4_9q22.33e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1056"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "2"; repStart "-36"; chr9 rmsk exon 97525022 97526188 7038 - . gene_id "ERVLB4_9q22.33e"; transcript_id "ERVLB4_9q22.33e"; locus "ERVLB4_9q22.33e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1056"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "4548"; repStart "-1"; ### LTR46_9q22.33 ### chr9 rmsk gene 97701097 97701986 . + . gene_id "LTR46_9q22.33"; transcript_id "LTR46_9q22.33"; locus "LTR46_9q22.33"; category "internal"; intModel "LTR46-int"; locid "LTR46-int_0012"; model_cov "1086"; model_pct "15.5"; chr9 rmsk exon 97701097 97701986 3554 + . gene_id "LTR46_9q22.33"; transcript_id "LTR46_9q22.33"; locus "LTR46_9q22.33"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0012"; repClass "LTR"; repEnd "2258"; repFamily "ERV1"; repLeft "-4727"; repStart "1172"; ### MER4B_9q22.33 ### chr9 rmsk gene 98041983 98045194 . - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0267"; model_cov "2330"; model_pct "34.5"; chr9 rmsk exon 98041983 98042012 677 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "1945"; repFamily "ERV1"; repLeft "1925"; repStart "-4813"; chr9 rmsk exon 98042312 98042465 677 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "1924"; repFamily "ERV1"; repLeft "1755"; repStart "-4834"; chr9 rmsk exon 98042468 98042589 3230 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "2373"; repStart "-4259"; chr9 rmsk exon 98042884 98043182 3230 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "2372"; repFamily "ERV1"; repLeft "2065"; repStart "-4386"; chr9 rmsk exon 98043466 98044362 5313 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "2064"; repFamily "ERV1"; repLeft "555"; repStart "-4694"; chr9 rmsk exon 98044671 98044836 5313 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "394"; repFamily "ERV1"; repLeft "256"; repStart "-6364"; chr9 rmsk exon 98045132 98045194 5313 - . gene_id "MER4B_9q22.33"; transcript_id "MER4B_9q22.33"; locus "MER4B_9q22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0267"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "194"; repStart "-6503"; ### HUERSP1_9q22.33 ### chr9 rmsk gene 98051685 98055734 . - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0110"; model_cov "2816"; model_pct "45.0"; chr9 rmsk exon 98051685 98052506 14487 - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0110"; repClass "LTR"; repEnd "2820"; repFamily "ERV1"; repLeft "2039"; repStart "-3443"; chr9 rmsk exon 98052806 98053802 14487 - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0110"; repClass "LTR"; repEnd "2038"; repFamily "ERV1"; repLeft "1065"; repStart "-4225"; chr9 rmsk exon 98053836 98054845 14487 - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0110"; repClass "LTR"; repEnd "1064"; repFamily "ERV1"; repLeft "2"; repStart "-5199"; chr9 rmsk exon 98054848 98055017 2997 - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0110"; repClass "LTR"; repEnd "689"; repFamily "ERV1"; repLeft "534"; repStart "-2"; chr9 rmsk exon 98055315 98055734 2997 - . gene_id "HUERSP1_9q22.33"; transcript_id "HUERSP1_9q22.33"; locus "HUERSP1_9q22.33"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0110"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "147"; repStart "-158"; ### LTR23_9q22.33a ### chr9 rmsk gene 98111494 98115852 . + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0045"; model_cov "2273"; model_pct "44.4"; chr9 rmsk exon 98111494 98111657 2427 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "1853"; repFamily "ERV1"; repLeft "-3270"; repStart "1698"; chr9 rmsk exon 98111958 98112518 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-2688"; repStart "1854"; chr9 rmsk exon 98112820 98112831 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "2436"; repFamily "ERV1"; repLeft "-2687"; repStart "2436"; chr9 rmsk exon 98113141 98113357 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "2684"; repFamily "ERV1"; repLeft "-2439"; repStart "2436"; chr9 rmsk exon 98113655 98114337 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "3358"; repFamily "ERV1"; repLeft "-1765"; repStart "2685"; chr9 rmsk exon 98114622 98115070 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "3818"; repFamily "ERV1"; repLeft "-1305"; repStart "3359"; chr9 rmsk exon 98115683 98115852 7670 + . gene_id "LTR23_9q22.33a"; transcript_id "LTR23_9q22.33a"; locus "LTR23_9q22.33a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0045"; repClass "LTR"; repEnd "3976"; repFamily "ERV1"; repLeft "-1147"; repStart "3819"; ### LTR23_9q22.33b ### chr9 rmsk gene 98116034 98117804 . + . gene_id "LTR23_9q22.33b"; transcript_id "LTR23_9q22.33b"; locus "LTR23_9q22.33b"; category "oneside"; intModel "LTR23-int"; locid "LTR23-int_0046"; model_cov "544"; model_pct "10.6"; chr9 rmsk exon 98116034 98116046 2433 + . gene_id "LTR23_9q22.33b"; transcript_id "LTR23_9q22.33b"; locus "LTR23_9q22.33b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0046"; repClass "LTR"; repEnd "3945"; repFamily "ERV1"; repLeft "-1178"; repStart "3936"; chr9 rmsk exon 98116323 98116554 2433 + . gene_id "LTR23_9q22.33b"; transcript_id "LTR23_9q22.33b"; locus "LTR23_9q22.33b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0046"; repClass "LTR"; repEnd "4169"; repFamily "ERV1"; repLeft "-954"; repStart "3946"; chr9 rmsk exon 98116864 98117141 2433 + . gene_id "LTR23_9q22.33b"; transcript_id "LTR23_9q22.33b"; locus "LTR23_9q22.33b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0046"; repClass "LTR"; repEnd "4482"; repFamily "ERV1"; repLeft "-641"; repStart "4170"; chr9 rmsk exon 98117595 98117804 875 + . gene_id "LTR23_9q22.33b"; transcript_id "LTR23_9q22.33b"; locus "LTR23_9q22.33b"; repName "LTR23"; geneRegion "ltr"; locid "LTR23-int_0046"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "226"; ### HERVH_9q22.33b ### chr9 rmsk gene 98265313 98271294 . - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0778"; model_cov "4927"; model_pct "63.9"; chr9 rmsk exon 98265313 98265722 2611 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 98265723 98266101 2254 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr9 rmsk exon 98266100 98266302 1249 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 98266304 98266475 4444 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4987"; repStart "-2564"; chr9 rmsk exon 98266798 98267299 4444 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "4986"; repFamily "ERV1"; repLeft "4489"; repStart "-2727"; chr9 rmsk exon 98267302 98270381 15016 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "793"; repStart "-3720"; chr9 rmsk exon 98270544 98270998 2939 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr9 rmsk exon 98271001 98271294 2030 - . gene_id "HERVH_9q22.33b"; transcript_id "HERVH_9q22.33b"; locus "HERVH_9q22.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0778"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "146"; repStart "-2"; ### ERV316A3_9q22.33a ### chr9 rmsk gene 98661715 98668243 . + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1736"; model_cov "4251"; model_pct "81.3"; chr9 rmsk exon 98661715 98662135 1184 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr9 rmsk exon 98662194 98664843 6157 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "-2481"; repStart "74"; chr9 rmsk exon 98664973 98664985 6157 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "2751"; repFamily "ERVL"; repLeft "-2475"; repStart "2746"; chr9 rmsk exon 98665331 98665651 6157 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2752"; chr9 rmsk exon 98665733 98666425 2029 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "4349"; repFamily "ERVL"; repLeft "-877"; repStart "3662"; chr9 rmsk exon 98666740 98667287 1784 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "-57"; repStart "4614"; chr9 rmsk exon 98667374 98667773 1315 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "26"; chr9 rmsk exon 98667816 98668243 1161 + . gene_id "ERV316A3_9q22.33a"; transcript_id "ERV316A3_9q22.33a"; locus "ERV316A3_9q22.33a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1736"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_9q22.33b ### chr9 rmsk gene 98935317 98937951 . - . gene_id "ERV316A3_9q22.33b"; transcript_id "ERV316A3_9q22.33b"; locus "ERV316A3_9q22.33b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1737"; model_cov "1891"; model_pct "36.2"; chr9 rmsk exon 98935317 98935621 530 - . gene_id "ERV316A3_9q22.33b"; transcript_id "ERV316A3_9q22.33b"; locus "ERV316A3_9q22.33b"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1737"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "191"; repStart "0"; chr9 rmsk exon 98936191 98937788 2723 - . gene_id "ERV316A3_9q22.33b"; transcript_id "ERV316A3_9q22.33b"; locus "ERV316A3_9q22.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1737"; repClass "LTR"; repEnd "4800"; repFamily "ERVL"; repLeft "2979"; repStart "-426"; chr9 rmsk exon 98937874 98937951 290 - . gene_id "ERV316A3_9q22.33b"; transcript_id "ERV316A3_9q22.33b"; locus "ERV316A3_9q22.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1737"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "3256"; repStart "-1900"; ### ERVLE_9q22.33 ### chr9 rmsk gene 98937941 98938643 . + . gene_id "ERVLE_9q22.33"; transcript_id "ERVLE_9q22.33"; locus "ERVLE_9q22.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2321"; model_cov "704"; model_pct "12.4"; chr9 rmsk exon 98937941 98938643 1804 + . gene_id "ERVLE_9q22.33"; transcript_id "ERVLE_9q22.33"; locus "ERVLE_9q22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2321"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "-2904"; repStart "2059"; ### MER4_9q22.33 ### chr9 rmsk gene 99006866 99015164 . - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0465"; model_cov "6657"; model_pct "100.0"; chr9 rmsk exon 99006866 99007411 3277 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0465"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 99007413 99008617 15050 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5387"; repStart "0"; chr9 rmsk exon 99008909 99010264 15050 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "5386"; repFamily "ERV1"; repLeft "3998"; repStart "-1212"; chr9 rmsk exon 99010739 99010937 15050 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "3997"; repFamily "ERV1"; repLeft "3815"; repStart "-2601"; chr9 rmsk exon 99010941 99012703 6872 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "2892"; repFamily "ERV1"; repLeft "694"; repStart "-3706"; chr9 rmsk exon 99013000 99013574 6872 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "30"; repStart "-6024"; chr9 rmsk exon 99013574 99013925 1411 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2121"; repStart "-4107"; chr9 rmsk exon 99013994 99014076 434 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-722"; repStart "-7241"; chr9 rmsk exon 99014064 99014611 2821 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0465"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr9 rmsk exon 99014615 99015164 3230 - . gene_id "MER4_9q22.33"; transcript_id "MER4_9q22.33"; locus "MER4_9q22.33"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0465"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_9q22.33c ### chr9 rmsk gene 99669781 99675901 . + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0779"; model_cov "4925"; model_pct "63.9"; chr9 rmsk exon 99669781 99670231 3422 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 99670234 99673561 15918 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr9 rmsk exon 99673534 99673703 853 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3126"; chr9 rmsk exon 99673694 99674193 3337 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr9 rmsk exon 99674196 99674854 4268 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 99674852 99675072 1390 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr9 rmsk exon 99675071 99675450 2511 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr9 rmsk exon 99675451 99675901 3463 + . gene_id "HERVH_9q22.33c"; transcript_id "HERVH_9q22.33c"; locus "HERVH_9q22.33c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0779"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_9q31.1a ### chr9 rmsk gene 100030133 100034561 . + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0332"; model_cov "4634"; model_pct "77.9"; chr9 rmsk exon 100030133 100030291 1095 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0332"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "470"; chr9 rmsk exon 100030292 100031029 4238 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0332"; repClass "LTR"; repEnd "-162"; repFamily "ERV1"; repLeft "-6108"; repStart "-1590"; chr9 rmsk exon 100031026 100031746 3529 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0332"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1188"; chr9 rmsk exon 100031743 100032389 3968 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0332"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "-3082"; repStart "2167"; chr9 rmsk exon 100032383 100033783 9445 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0332"; repClass "LTR"; repEnd "5486"; repFamily "ERV1"; repLeft "-460"; repStart "4023"; chr9 rmsk exon 100033780 100033993 1489 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0332"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5729"; chr9 rmsk exon 100034023 100034561 3606 + . gene_id "MER41_9q31.1a"; transcript_id "MER41_9q31.1a"; locus "MER41_9q31.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0332"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HERVL_9q31.1a ### chr9 rmsk gene 100074354 100079497 . + . gene_id "HERVL_9q31.1a"; transcript_id "HERVL_9q31.1a"; locus "HERVL_9q31.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0826"; model_cov "4088"; model_pct "72.3"; chr9 rmsk exon 100074354 100078175 30348 + . gene_id "HERVL_9q31.1a"; transcript_id "HERVL_9q31.1a"; locus "HERVL_9q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0826"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "-234"; repStart "1562"; chr9 rmsk exon 100078779 100079018 30348 + . gene_id "HERVL_9q31.1a"; transcript_id "HERVL_9q31.1a"; locus "HERVL_9q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0826"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5423"; chr9 rmsk exon 100079019 100079413 3072 + . gene_id "HERVL_9q31.1a"; transcript_id "HERVL_9q31.1a"; locus "HERVL_9q31.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0826"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr9 rmsk exon 100079462 100079497 3072 + . gene_id "HERVL_9q31.1a"; transcript_id "HERVL_9q31.1a"; locus "HERVL_9q31.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0826"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "413"; ### HERVH_9q31.1 ### chr9 rmsk gene 100140182 100146522 . - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0780"; model_cov "5627"; model_pct "73.0"; chr9 rmsk exon 100140182 100140590 2740 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 100140591 100140970 2354 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr9 rmsk exon 100140968 100141183 1397 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 100141182 100142889 7929 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4551"; repStart "-1290"; chr9 rmsk exon 100142880 100143029 900 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 100143009 100146113 16472 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr9 rmsk exon 100146116 100146522 2637 - . gene_id "HERVH_9q31.1"; transcript_id "HERVH_9q31.1"; locus "HERVH_9q31.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0780"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_9q31.1a ### chr9 rmsk gene 100213558 100216444 . - . gene_id "HERVL40_9q31.1a"; transcript_id "HERVL40_9q31.1a"; locus "HERVL40_9q31.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0268"; model_cov "2513"; model_pct "45.4"; chr9 rmsk exon 100213558 100213978 1718 - . gene_id "HERVL40_9q31.1a"; transcript_id "HERVL40_9q31.1a"; locus "HERVL40_9q31.1a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0268"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "1"; repStart "-9"; chr9 rmsk exon 100213981 100216444 8612 - . gene_id "HERVL40_9q31.1a"; transcript_id "HERVL40_9q31.1a"; locus "HERVL40_9q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0268"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "3013"; repStart "-4"; ### HML5_9q31.1 ### chr9 rmsk gene 100364027 100369211 . - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0076"; model_cov "4006"; model_pct "58.6"; chr9 rmsk exon 100364027 100364468 1911 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "LTR22C"; geneRegion "ltr"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "503"; repFamily "ERVK"; repLeft "-9"; repStart "-6"; chr9 rmsk exon 100364473 100364888 1907 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "4745"; repStart "-1734"; chr9 rmsk exon 100364869 100367002 19078 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "5068"; repFamily "ERVK"; repLeft "2923"; repStart "-1769"; chr9 rmsk exon 100367300 100367894 19078 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "2922"; repFamily "ERVK"; repLeft "2323"; repStart "-3915"; chr9 rmsk exon 100367886 100368761 5983 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "1"; repStart "-5932"; chr9 rmsk exon 100368762 100369211 2123 - . gene_id "HML5_9q31.1"; transcript_id "HML5_9q31.1"; locus "HML5_9q31.1"; repName "LTR22C"; geneRegion "ltr"; locid "HERVK22-int_0076"; repClass "LTR"; repEnd "509"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL32_9q31.1 ### chr9 rmsk gene 100913693 100916653 . + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0036"; model_cov "1436"; model_pct "42.0"; chr9 rmsk exon 100913693 100913766 413 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "-382"; repStart "1"; chr9 rmsk exon 100913750 100913806 276 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "5"; chr9 rmsk exon 100913822 100914045 983 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-9"; repStart "218"; chr9 rmsk exon 100914054 100915298 4034 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "1246"; repFamily "ERVL"; repLeft "-2172"; repStart "1"; chr9 rmsk exon 100915801 100915979 418 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "-6"; repStart "3221"; chr9 rmsk exon 100915981 100916054 372 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "74"; repFamily "ERVL"; repLeft "-383"; repStart "6"; chr9 rmsk exon 100916436 100916653 937 + . gene_id "HERVL32_9q31.1"; transcript_id "HERVL32_9q31.1"; locus "HERVL32_9q31.1"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0036"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-5"; repStart "217"; ### MER41_9q31.1b ### chr9 rmsk gene 101116179 101117658 . + . gene_id "MER41_9q31.1b"; transcript_id "MER41_9q31.1b"; locus "MER41_9q31.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0333"; model_cov "620"; model_pct "10.4"; chr9 rmsk exon 101116179 101116532 4031 + . gene_id "MER41_9q31.1b"; transcript_id "MER41_9q31.1b"; locus "MER41_9q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0333"; repClass "LTR"; repEnd "5684"; repFamily "ERV1"; repLeft "-262"; repStart "5323"; chr9 rmsk exon 101116837 101117111 4031 + . gene_id "MER41_9q31.1b"; transcript_id "MER41_9q31.1b"; locus "MER41_9q31.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0333"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5685"; chr9 rmsk exon 101117112 101117658 3837 + . gene_id "MER41_9q31.1b"; transcript_id "MER41_9q31.1b"; locus "MER41_9q31.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0333"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HML1_9q31.1 ### chr9 rmsk gene 101123434 101127858 . - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0067"; model_cov "2163"; model_pct "35.5"; chr9 rmsk exon 101123434 101124003 3974 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "8"; repStart "0"; chr9 rmsk exon 101124012 101124159 794 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr9 rmsk exon 101124223 101124484 1762 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "5896"; repFamily "ERVK"; repLeft "5612"; repStart "-200"; chr9 rmsk exon 101124484 101124829 1273 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "5465"; repFamily "ERVK"; repLeft "5011"; repStart "-631"; chr9 rmsk exon 101124829 101124948 820 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "4277"; repStart "-1698"; chr9 rmsk exon 101126090 101126550 3399 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "1704"; repStart "-3921"; chr9 rmsk exon 101126585 101127275 5032 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr9 rmsk exon 101127276 101127858 4229 - . gene_id "HML1_9q31.1"; transcript_id "HML1_9q31.1"; locus "HML1_9q31.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0067"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "4"; repStart "0"; ### HERVL_9q31.1b ### chr9 rmsk gene 101178021 101180285 . + . gene_id "HERVL_9q31.1b"; transcript_id "HERVL_9q31.1b"; locus "HERVL_9q31.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0827"; model_cov "1721"; model_pct "30.4"; chr9 rmsk exon 101178021 101179711 13212 + . gene_id "HERVL_9q31.1b"; transcript_id "HERVL_9q31.1b"; locus "HERVL_9q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0827"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3933"; chr9 rmsk exon 101179712 101180094 2859 + . gene_id "HERVL_9q31.1b"; transcript_id "HERVL_9q31.1b"; locus "HERVL_9q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0827"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr9 rmsk exon 101180236 101180285 256 + . gene_id "HERVL_9q31.1b"; transcript_id "HERVL_9q31.1b"; locus "HERVL_9q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0827"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "396"; ### MER4B_9q31.1a ### chr9 rmsk gene 101377191 101380103 . + . gene_id "MER4B_9q31.1a"; transcript_id "MER4B_9q31.1a"; locus "MER4B_9q31.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0268"; model_cov "1182"; model_pct "17.5"; chr9 rmsk exon 101377191 101377549 1928 + . gene_id "MER4B_9q31.1a"; transcript_id "MER4B_9q31.1a"; locus "MER4B_9q31.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0268"; repClass "LTR"; repEnd "4584"; repFamily "ERV1"; repLeft "-2174"; repStart "4233"; chr9 rmsk exon 101379300 101380103 2354 + . gene_id "MER4B_9q31.1a"; transcript_id "MER4B_9q31.1a"; locus "MER4B_9q31.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0268"; repClass "LTR"; repEnd "6059"; repFamily "ERV1"; repLeft "-699"; repStart "5228"; ### ERVLE_9q31.1a ### chr9 rmsk gene 101490002 101491580 . - . gene_id "ERVLE_9q31.1a"; transcript_id "ERVLE_9q31.1a"; locus "ERVLE_9q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2322"; model_cov "1067"; model_pct "18.8"; chr9 rmsk exon 101490002 101490129 308 - . gene_id "ERVLE_9q31.1a"; transcript_id "ERVLE_9q31.1a"; locus "ERVLE_9q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2322"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "5124"; repStart "-370"; chr9 rmsk exon 101490721 101491580 2099 - . gene_id "ERVLE_9q31.1a"; transcript_id "ERVLE_9q31.1a"; locus "ERVLE_9q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2322"; repClass "LTR"; repEnd "4863"; repFamily "ERVL"; repLeft "3969"; repStart "-804"; ### MER101_9q31.1a ### chr9 rmsk gene 101493858 101499809 . - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0244"; model_cov "4443"; model_pct "66.9"; chr9 rmsk exon 101493858 101494961 3110 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0244"; repClass "LTR"; repEnd "5408"; repFamily "ERV1"; repLeft "4245"; repStart "-1231"; chr9 rmsk exon 101495485 101498240 3951 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0244"; repClass "LTR"; repEnd "3559"; repFamily "ERV1"; repLeft "1115"; repStart "-3080"; chr9 rmsk exon 101498337 101498653 1061 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0244"; repClass "LTR"; repEnd "2954"; repFamily "ERV1"; repLeft "2650"; repStart "-3685"; chr9 rmsk exon 101498678 101498925 690 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0244"; repClass "LTR"; repEnd "2542"; repFamily "ERV1"; repLeft "2305"; repStart "-4097"; chr9 rmsk exon 101499023 101499325 520 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0244"; repClass "LTR"; repEnd "2117"; repFamily "ERV1"; repLeft "1822"; repStart "-4522"; chr9 rmsk exon 101499378 101499809 2400 - . gene_id "MER101_9q31.1a"; transcript_id "MER101_9q31.1a"; locus "MER101_9q31.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0244"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_9q31.1b ### chr9 rmsk gene 102017314 102020177 . + . gene_id "ERVLE_9q31.1b"; transcript_id "ERVLE_9q31.1b"; locus "ERVLE_9q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2323"; model_cov "1617"; model_pct "28.5"; chr9 rmsk exon 102017314 102017563 463 + . gene_id "ERVLE_9q31.1b"; transcript_id "ERVLE_9q31.1b"; locus "ERVLE_9q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2323"; repClass "LTR"; repEnd "2427"; repFamily "ERVL"; repLeft "-3240"; repStart "2180"; chr9 rmsk exon 102018202 102018355 636 + . gene_id "ERVLE_9q31.1b"; transcript_id "ERVLE_9q31.1b"; locus "ERVLE_9q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2323"; repClass "LTR"; repEnd "3142"; repFamily "ERVL"; repLeft "-2525"; repStart "2983"; chr9 rmsk exon 102018506 102019219 681 + . gene_id "ERVLE_9q31.1b"; transcript_id "ERVLE_9q31.1b"; locus "ERVLE_9q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2323"; repClass "LTR"; repEnd "4081"; repFamily "ERVL"; repLeft "-1586"; repStart "3378"; chr9 rmsk exon 102019685 102020177 832 + . gene_id "ERVLE_9q31.1b"; transcript_id "ERVLE_9q31.1b"; locus "ERVLE_9q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2323"; repClass "LTR"; repEnd "4636"; repFamily "ERVL"; repLeft "-1031"; repStart "4128"; ### ERV316A3_9q31.1a ### chr9 rmsk gene 102099591 102102407 . + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1738"; model_cov "1769"; model_pct "33.8"; chr9 rmsk exon 102099591 102100011 833 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr9 rmsk exon 102100034 102100241 432 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-4762"; repStart "242"; chr9 rmsk exon 102100307 102100725 989 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "1032"; repFamily "ERVL"; repLeft "-4194"; repStart "612"; chr9 rmsk exon 102100920 102101255 660 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "1324"; repFamily "ERVL"; repLeft "-3902"; repStart "985"; chr9 rmsk exon 102101274 102101543 703 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "3919"; repFamily "ERVL"; repLeft "-1307"; repStart "3637"; chr9 rmsk exon 102101555 102102067 1143 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "4476"; repFamily "ERVL"; repLeft "-750"; repStart "3970"; chr9 rmsk exon 102102255 102102407 620 + . gene_id "ERV316A3_9q31.1a"; transcript_id "ERV316A3_9q31.1a"; locus "ERV316A3_9q31.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1738"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "285"; ### HERVL40_9q31.1b ### chr9 rmsk gene 102390362 102398887 . - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0269"; model_cov "3549"; model_pct "64.2"; chr9 rmsk exon 102390362 102390811 1356 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "32"; repStart "0"; chr9 rmsk exon 102390812 102391068 974 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "5284"; repStart "-3"; chr9 rmsk exon 102391276 102391329 263 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "5223"; repStart "-254"; chr9 rmsk exon 102393170 102393395 526 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "4964"; repStart "-325"; chr9 rmsk exon 102393586 102394127 2201 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "4196"; repStart "-870"; chr9 rmsk exon 102394415 102394785 2201 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "3797"; repStart "-1335"; chr9 rmsk exon 102395466 102397099 4278 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "3681"; repFamily "ERVL"; repLeft "2050"; repStart "-1849"; chr9 rmsk exon 102397099 102397460 1072 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1236"; repStart "-3913"; chr9 rmsk exon 102398150 102398285 520 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "1073"; repFamily "ERVL"; repLeft "935"; repStart "-4457"; chr9 rmsk exon 102398603 102398714 668 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "408"; repStart "0"; chr9 rmsk exon 102398717 102398887 633 - . gene_id "HERVL40_9q31.1b"; transcript_id "HERVL40_9q31.1b"; locus "HERVL40_9q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0269"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "159"; repStart "-189"; ### MER4B_9q31.1b ### chr9 rmsk gene 102408787 102412555 . - . gene_id "MER4B_9q31.1b"; transcript_id "MER4B_9q31.1b"; locus "MER4B_9q31.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0269"; model_cov "3582"; model_pct "53.0"; chr9 rmsk exon 102408787 102409465 3646 - . gene_id "MER4B_9q31.1b"; transcript_id "MER4B_9q31.1b"; locus "MER4B_9q31.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0269"; repClass "LTR"; repEnd "6118"; repFamily "ERV1"; repLeft "4854"; repStart "-640"; chr9 rmsk exon 102409733 102411394 6239 - . gene_id "MER4B_9q31.1b"; transcript_id "MER4B_9q31.1b"; locus "MER4B_9q31.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0269"; repClass "LTR"; repEnd "5451"; repFamily "ERV1"; repLeft "4165"; repStart "-1307"; chr9 rmsk exon 102411389 102412555 1430 - . gene_id "MER4B_9q31.1b"; transcript_id "MER4B_9q31.1b"; locus "MER4B_9q31.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0269"; repClass "LTR"; repEnd "2822"; repFamily "ERV1"; repLeft "1790"; repStart "-3936"; ### ERVL_9q31.1 ### chr9 rmsk gene 102539895 102542805 . + . gene_id "ERVL_9q31.1"; transcript_id "ERVL_9q31.1"; locus "ERVL_9q31.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0271"; model_cov "2986"; model_pct "51.9"; chr9 rmsk exon 102539895 102542805 13930 + . gene_id "ERVL_9q31.1"; transcript_id "ERVL_9q31.1"; locus "ERVL_9q31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0271"; repClass "LTR"; repEnd "3644"; repFamily "ERVL"; repLeft "-2113"; repStart "658"; ### HERVL40_9q31.1c ### chr9 rmsk gene 102710082 102713759 . + . gene_id "HERVL40_9q31.1c"; transcript_id "HERVL40_9q31.1c"; locus "HERVL40_9q31.1c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0270"; model_cov "2209"; model_pct "39.9"; chr9 rmsk exon 102710082 102710477 1056 + . gene_id "HERVL40_9q31.1c"; transcript_id "HERVL40_9q31.1c"; locus "HERVL40_9q31.1c"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0270"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "54"; chr9 rmsk exon 102710479 102712100 2605 + . gene_id "HERVL40_9q31.1c"; transcript_id "HERVL40_9q31.1c"; locus "HERVL40_9q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0270"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1"; chr9 rmsk exon 102712105 102712548 1964 + . gene_id "HERVL40_9q31.1c"; transcript_id "HERVL40_9q31.1c"; locus "HERVL40_9q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0270"; repClass "LTR"; repEnd "2482"; repFamily "ERVL"; repLeft "-3048"; repStart "2045"; chr9 rmsk exon 102713599 102713759 1964 + . gene_id "HERVL40_9q31.1c"; transcript_id "HERVL40_9q31.1c"; locus "HERVL40_9q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0270"; repClass "LTR"; repEnd "2639"; repFamily "ERVL"; repLeft "-2891"; repStart "2483"; ### HERVL_9q31.1c ### chr9 rmsk gene 102806903 102813464 . - . gene_id "HERVL_9q31.1c"; transcript_id "HERVL_9q31.1c"; locus "HERVL_9q31.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0828"; model_cov "5653"; model_pct "100.0"; chr9 rmsk exon 102806903 102807350 2517 - . gene_id "HERVL_9q31.1c"; transcript_id "HERVL_9q31.1c"; locus "HERVL_9q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0828"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-8"; repStart "-45"; chr9 rmsk exon 102807351 102812977 41233 - . gene_id "HERVL_9q31.1c"; transcript_id "HERVL_9q31.1c"; locus "HERVL_9q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0828"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 102812978 102813017 2939 - . gene_id "HERVL_9q31.1c"; transcript_id "HERVL_9q31.1c"; locus "HERVL_9q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0828"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr9 rmsk exon 102813080 102813464 2939 - . gene_id "HERVL_9q31.1c"; transcript_id "HERVL_9q31.1c"; locus "HERVL_9q31.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0828"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "3"; repStart "-58"; ### MER61_9q31.1 ### chr9 rmsk gene 103126782 103132496 . - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0243"; model_cov "4770"; model_pct "91.4"; chr9 rmsk exon 103126782 103127112 1700 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0243"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 103127113 103129153 24243 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0243"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3143"; repStart "0"; chr9 rmsk exon 103129455 103131228 24243 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0243"; repClass "LTR"; repEnd "3142"; repFamily "ERV1"; repLeft "1359"; repStart "-2075"; chr9 rmsk exon 103131230 103131378 1068 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0243"; repClass "LTR"; repEnd "1257"; repFamily "ERV1"; repLeft "1107"; repStart "-3960"; chr9 rmsk exon 103131375 103132163 3654 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0243"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "2"; repStart "-4452"; chr9 rmsk exon 103132165 103132496 1602 - . gene_id "MER61_9q31.1"; transcript_id "MER61_9q31.1"; locus "MER61_9q31.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0243"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_9q31.1c ### chr9 rmsk gene 103206712 103212466 . - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2324"; model_cov "854"; model_pct "15.1"; chr9 rmsk exon 103206712 103206769 256 - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2324"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "4815"; repStart "-796"; chr9 rmsk exon 103207639 103208121 612 - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2324"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "3505"; repStart "-1654"; chr9 rmsk exon 103208829 103208901 670 - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2324"; repClass "LTR"; repEnd "2540"; repFamily "ERVL"; repLeft "2471"; repStart "-3127"; chr9 rmsk exon 103211192 103211226 670 - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2324"; repClass "LTR"; repEnd "2470"; repFamily "ERVL"; repLeft "2443"; repStart "-3197"; chr9 rmsk exon 103212287 103212466 670 - . gene_id "ERVLE_9q31.1c"; transcript_id "ERVLE_9q31.1c"; locus "ERVLE_9q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2324"; repClass "LTR"; repEnd "2442"; repFamily "ERVL"; repLeft "2248"; repStart "-3225"; ### ERVLE_9q31.1d ### chr9 rmsk gene 103504275 103505242 . - . gene_id "ERVLE_9q31.1d"; transcript_id "ERVLE_9q31.1d"; locus "ERVLE_9q31.1d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2325"; model_cov "569"; model_pct "10.0"; chr9 rmsk exon 103504275 103504466 1243 - . gene_id "ERVLE_9q31.1d"; transcript_id "ERVLE_9q31.1d"; locus "ERVLE_9q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2325"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "594"; repStart "-4885"; chr9 rmsk exon 103504606 103504993 1243 - . gene_id "ERVLE_9q31.1d"; transcript_id "ERVLE_9q31.1d"; locus "ERVLE_9q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2325"; repClass "LTR"; repEnd "593"; repFamily "ERVL"; repLeft "212"; repStart "-5074"; chr9 rmsk exon 103504995 103505242 596 - . gene_id "ERVLE_9q31.1d"; transcript_id "ERVLE_9q31.1d"; locus "ERVLE_9q31.1d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2325"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "97"; repStart "-270"; ### ERV316A3_9q31.1b ### chr9 rmsk gene 103979252 103983451 . - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1741"; model_cov "3050"; model_pct "58.4"; chr9 rmsk exon 103979252 103979689 869 - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1741"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-26"; chr9 rmsk exon 103979695 103980047 421 - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1741"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4808"; repStart "-3"; chr9 rmsk exon 103980060 103980936 6816 - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1741"; repClass "LTR"; repEnd "3772"; repFamily "ERVL"; repLeft "2853"; repStart "-1454"; chr9 rmsk exon 103981300 103981972 6816 - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1741"; repClass "LTR"; repEnd "2852"; repFamily "ERVL"; repLeft "2202"; repStart "-2374"; chr9 rmsk exon 103982423 103983451 6816 - . gene_id "ERV316A3_9q31.1b"; transcript_id "ERV316A3_9q31.1b"; locus "ERV316A3_9q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1741"; repClass "LTR"; repEnd "2201"; repFamily "ERVL"; repLeft "1135"; repStart "-3025"; ### MER41_9q31.1c ### chr9 rmsk gene 104077222 104084950 . - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0334"; model_cov "6915"; model_pct "100.0"; chr9 rmsk exon 104077222 104077848 4357 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0334"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr9 rmsk exon 104077849 104079059 11507 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4701"; repStart "0"; chr9 rmsk exon 104079426 104081277 11507 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "4278"; repFamily "ERV1"; repLeft "1093"; repStart "-1668"; chr9 rmsk exon 104081609 104081998 11273 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "2564"; repFamily "ERV1"; repLeft "2167"; repStart "-3382"; chr9 rmsk exon 104081988 104082183 906 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1719"; repStart "-3929"; chr9 rmsk exon 104082162 104082406 2092 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "2857"; repFamily "ERV1"; repLeft "2433"; repStart "-3089"; chr9 rmsk exon 104082437 104082504 2092 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "1366"; repFamily "ERV1"; repLeft "1286"; repStart "-4580"; chr9 rmsk exon 104083054 104084320 7939 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0334"; repClass "LTR"; repEnd "1287"; repFamily "ERV1"; repLeft "1"; repStart "-4659"; chr9 rmsk exon 104084321 104084950 4688 - . gene_id "MER41_9q31.1c"; transcript_id "MER41_9q31.1c"; locus "MER41_9q31.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0334"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_9q31.1c ### chr9 rmsk gene 104169981 104172285 . + . gene_id "ERV316A3_9q31.1c"; transcript_id "ERV316A3_9q31.1c"; locus "ERV316A3_9q31.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1742"; model_cov "1634"; model_pct "31.3"; chr9 rmsk exon 104169981 104171503 3883 + . gene_id "ERV316A3_9q31.1c"; transcript_id "ERV316A3_9q31.1c"; locus "ERV316A3_9q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1742"; repClass "LTR"; repEnd "3275"; repFamily "ERVL"; repLeft "-1951"; repStart "1755"; chr9 rmsk exon 104171796 104171902 3883 + . gene_id "ERV316A3_9q31.1c"; transcript_id "ERV316A3_9q31.1c"; locus "ERV316A3_9q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1742"; repClass "LTR"; repEnd "3390"; repFamily "ERVL"; repLeft "-1836"; repStart "3276"; chr9 rmsk exon 104171932 104172285 1127 + . gene_id "ERV316A3_9q31.1c"; transcript_id "ERV316A3_9q31.1c"; locus "ERV316A3_9q31.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1742"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "94"; ### MER4_9q31.1 ### chr9 rmsk gene 104408924 104415996 . + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0467"; model_cov "5635"; model_pct "85.4"; chr9 rmsk exon 104408924 104409393 3338 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0467"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 104409951 104410050 339 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr9 rmsk exon 104410094 104410442 1217 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2119"; chr9 rmsk exon 104410442 104411287 5207 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "987"; repFamily "ERV1"; repLeft "-5611"; repStart "29"; chr9 rmsk exon 104411315 104411707 5207 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "1274"; repFamily "ERV1"; repLeft "-5324"; repStart "692"; chr9 rmsk exon 104411942 104412863 3803 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2737"; chr9 rmsk exon 104412863 104415539 16180 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0467"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chr9 rmsk exon 104415548 104415996 3084 + . gene_id "MER4_9q31.1"; transcript_id "MER4_9q31.1"; locus "MER4_9q31.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0467"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_9q31.1d ### chr9 rmsk gene 104430860 104432587 . - . gene_id "ERV316A3_9q31.1d"; transcript_id "ERV316A3_9q31.1d"; locus "ERV316A3_9q31.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1744"; model_cov "1048"; model_pct "20.1"; chr9 rmsk exon 104430860 104431065 411 - . gene_id "ERV316A3_9q31.1d"; transcript_id "ERV316A3_9q31.1d"; locus "ERV316A3_9q31.1d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1744"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "149"; repStart "-75"; chr9 rmsk exon 104431071 104432139 3729 - . gene_id "ERV316A3_9q31.1d"; transcript_id "ERV316A3_9q31.1d"; locus "ERV316A3_9q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1744"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "4113"; repStart "-65"; chr9 rmsk exon 104432285 104432587 1014 - . gene_id "ERV316A3_9q31.1d"; transcript_id "ERV316A3_9q31.1d"; locus "ERV316A3_9q31.1d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1744"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "3"; repStart "-74"; ### MER101_9q31.1b ### chr9 rmsk gene 105055371 105056952 . + . gene_id "MER101_9q31.1b"; transcript_id "MER101_9q31.1b"; locus "MER101_9q31.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0246"; model_cov "1256"; model_pct "18.9"; chr9 rmsk exon 105055371 105055431 724 + . gene_id "MER101_9q31.1b"; transcript_id "MER101_9q31.1b"; locus "MER101_9q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0246"; repClass "LTR"; repEnd "2192"; repFamily "ERV1"; repLeft "-4447"; repStart "2136"; chr9 rmsk exon 105055769 105056483 3132 + . gene_id "MER101_9q31.1b"; transcript_id "MER101_9q31.1b"; locus "MER101_9q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0246"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-3295"; repStart "2312"; chr9 rmsk exon 105056794 105056952 3098 + . gene_id "MER101_9q31.1b"; transcript_id "MER101_9q31.1b"; locus "MER101_9q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0246"; repClass "LTR"; repEnd "3513"; repFamily "ERV1"; repLeft "-3126"; repStart "3345"; ### ERVLB4_9q31.2 ### chr9 rmsk gene 105701226 105701932 . - . gene_id "ERVLB4_9q31.2"; transcript_id "ERVLB4_9q31.2"; locus "ERVLB4_9q31.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1059"; model_cov "827"; model_pct "14.5"; chr9 rmsk exon 105701226 105701431 401 - . gene_id "ERVLB4_9q31.2"; transcript_id "ERVLB4_9q31.2"; locus "ERVLB4_9q31.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1059"; repClass "LTR"; repEnd "3550"; repFamily "ERVL"; repLeft "3172"; repStart "-2164"; chr9 rmsk exon 105701516 105701932 1143 - . gene_id "ERVLB4_9q31.2"; transcript_id "ERVLB4_9q31.2"; locus "ERVLB4_9q31.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1059"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "2046"; repStart "-3219"; ### HERVL_9q31.2 ### chr9 rmsk gene 106039982 106044643 . - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0829"; model_cov "3772"; model_pct "66.7"; chr9 rmsk exon 106039982 106040425 3451 - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0829"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr9 rmsk exon 106040426 106044033 26928 - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0829"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2025"; repStart "0"; chr9 rmsk exon 106044023 106044169 934 - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0829"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "1"; repStart "-5510"; chr9 rmsk exon 106044170 106044218 2968 - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0829"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "391"; repStart "0"; chr9 rmsk exon 106044262 106044643 2968 - . gene_id "HERVL_9q31.2"; transcript_id "HERVL_9q31.2"; locus "HERVL_9q31.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0829"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "2"; repStart "-63"; ### HERVH_9q31.2 ### chr9 rmsk gene 106788282 106793849 . + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0781"; model_cov "5257"; model_pct "68.2"; chr9 rmsk exon 106788282 106788693 2846 + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0781"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 106788696 106792594 20864 + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0781"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr9 rmsk exon 106792597 106793258 4016 + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0781"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr9 rmsk exon 106793260 106793475 1295 + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0781"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr9 rmsk exon 106793476 106793849 2273 + . gene_id "HERVH_9q31.2"; transcript_id "HERVH_9q31.2"; locus "HERVH_9q31.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0781"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "-4"; repStart "7324"; ### ERVLE_9q31.2a ### chr9 rmsk gene 107218540 107220275 . - . gene_id "ERVLE_9q31.2a"; transcript_id "ERVLE_9q31.2a"; locus "ERVLE_9q31.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2328"; model_cov "1724"; model_pct "30.4"; chr9 rmsk exon 107218540 107219082 1176 - . gene_id "ERVLE_9q31.2a"; transcript_id "ERVLE_9q31.2a"; locus "ERVLE_9q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2328"; repClass "LTR"; repEnd "4262"; repFamily "ERVL"; repLeft "3691"; repStart "-1405"; chr9 rmsk exon 107219144 107219472 773 - . gene_id "ERVLE_9q31.2a"; transcript_id "ERVLE_9q31.2a"; locus "ERVLE_9q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2328"; repClass "LTR"; repEnd "3362"; repFamily "ERVL"; repLeft "3006"; repStart "-2305"; chr9 rmsk exon 107219489 107220275 1876 - . gene_id "ERVLE_9q31.2a"; transcript_id "ERVLE_9q31.2a"; locus "ERVLE_9q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2328"; repClass "LTR"; repEnd "2930"; repFamily "ERVL"; repLeft "2133"; repStart "-2737"; ### ERVLE_9q31.2b ### chr9 rmsk gene 108258347 108258914 . + . gene_id "ERVLE_9q31.2b"; transcript_id "ERVLE_9q31.2b"; locus "ERVLE_9q31.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2329"; model_cov "572"; model_pct "10.1"; chr9 rmsk exon 108258347 108258914 1032 + . gene_id "ERVLE_9q31.2b"; transcript_id "ERVLE_9q31.2b"; locus "ERVLE_9q31.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2329"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "-724"; repStart "4371"; ### MER4_9q31.3a ### chr9 rmsk gene 110307558 110309883 . + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0469"; model_cov "1016"; model_pct "15.4"; chr9 rmsk exon 110307558 110308009 3225 + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0469"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 110308514 110308634 428 + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0469"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr9 rmsk exon 110308683 110309034 1475 + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0469"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2119"; chr9 rmsk exon 110309042 110309329 3131 + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0469"; repClass "LTR"; repEnd "347"; repFamily "ERV1"; repLeft "-6251"; repStart "34"; chr9 rmsk exon 110309636 110309883 3131 + . gene_id "MER4_9q31.3a"; transcript_id "MER4_9q31.3a"; locus "MER4_9q31.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0469"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "-6002"; repStart "348"; ### MER4_9q31.3b ### chr9 rmsk gene 110309899 110314420 . + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0470"; model_cov "2676"; model_pct "40.6"; chr9 rmsk exon 110309899 110309947 268 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "-6002"; repStart "553"; chr9 rmsk exon 110309963 110310103 994 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "553"; chr9 rmsk exon 110310116 110310182 372 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "-5775"; repStart "756"; chr9 rmsk exon 110310253 110310948 4644 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "2488"; repFamily "ERV1"; repLeft "-4110"; repStart "1764"; chr9 rmsk exon 110311185 110311524 2064 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "3082"; repFamily "ERV1"; repLeft "-3516"; repStart "2737"; chr9 rmsk exon 110312027 110312897 8440 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "6139"; repFamily "ERV1"; repLeft "-459"; repStart "5231"; chr9 rmsk exon 110313206 110313418 8440 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "6352"; repFamily "ERV1"; repLeft "-246"; repStart "6140"; chr9 rmsk exon 110313724 110313985 8440 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0470"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6353"; chr9 rmsk exon 110313994 110314420 3106 + . gene_id "MER4_9q31.3b"; transcript_id "MER4_9q31.3b"; locus "MER4_9q31.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0470"; repClass "LTR"; repEnd "416"; repFamily "ERV1"; repLeft "-56"; repStart "1"; ### ERV316A3_9q31.3 ### chr9 rmsk gene 111052701 111054452 . + . gene_id "ERV316A3_9q31.3"; transcript_id "ERV316A3_9q31.3"; locus "ERV316A3_9q31.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1746"; model_cov "1359"; model_pct "26.0"; chr9 rmsk exon 111052701 111054016 3957 + . gene_id "ERV316A3_9q31.3"; transcript_id "ERV316A3_9q31.3"; locus "ERV316A3_9q31.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1746"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3867"; chr9 rmsk exon 111054023 111054452 887 + . gene_id "ERV316A3_9q31.3"; transcript_id "ERV316A3_9q31.3"; locus "ERV316A3_9q31.3"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1746"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-9"; repStart "7"; ### HERVL_9q31.3 ### chr9 rmsk gene 111090727 111092086 . + . gene_id "HERVL_9q31.3"; transcript_id "HERVL_9q31.3"; locus "HERVL_9q31.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0830"; model_cov "845"; model_pct "14.9"; chr9 rmsk exon 111090727 111091122 2521 + . gene_id "HERVL_9q31.3"; transcript_id "HERVL_9q31.3"; locus "HERVL_9q31.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0830"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr9 rmsk exon 111091247 111092086 6369 + . gene_id "HERVL_9q31.3"; transcript_id "HERVL_9q31.3"; locus "HERVL_9q31.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0830"; repClass "LTR"; repEnd "846"; repFamily "ERVL"; repLeft "-4808"; repStart "1"; ### ERVLE_9q31.3 ### chr9 rmsk gene 111123096 111124325 . - . gene_id "ERVLE_9q31.3"; transcript_id "ERVLE_9q31.3"; locus "ERVLE_9q31.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2330"; model_cov "880"; model_pct "15.5"; chr9 rmsk exon 111123096 111123221 379 - . gene_id "ERVLE_9q31.3"; transcript_id "ERVLE_9q31.3"; locus "ERVLE_9q31.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2330"; repClass "LTR"; repEnd "4574"; repFamily "ERVL"; repLeft "4437"; repStart "-1093"; chr9 rmsk exon 111123276 111123610 1186 - . gene_id "ERVLE_9q31.3"; transcript_id "ERVLE_9q31.3"; locus "ERVLE_9q31.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2330"; repClass "LTR"; repEnd "4219"; repFamily "ERVL"; repLeft "3862"; repStart "-1448"; chr9 rmsk exon 111123666 111123894 855 - . gene_id "ERVLE_9q31.3"; transcript_id "ERVLE_9q31.3"; locus "ERVLE_9q31.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2330"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2529"; repStart "-2909"; chr9 rmsk exon 111124166 111124325 855 - . gene_id "ERVLE_9q31.3"; transcript_id "ERVLE_9q31.3"; locus "ERVLE_9q31.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2330"; repClass "LTR"; repEnd "2528"; repFamily "ERVL"; repLeft "2371"; repStart "-3139"; ### HERVW_9q31.3 ### chr9 rmsk gene 111336413 111338179 . + . gene_id "HERVW_9q31.3"; transcript_id "HERVW_9q31.3"; locus "HERVW_9q31.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0195"; model_cov "1443"; model_pct "16.7"; chr9 rmsk exon 111336413 111337855 11430 + . gene_id "HERVW_9q31.3"; transcript_id "HERVW_9q31.3"; locus "HERVW_9q31.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0195"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7183"; chr9 rmsk exon 111337856 111338179 2565 + . gene_id "HERVW_9q31.3"; transcript_id "HERVW_9q31.3"; locus "HERVW_9q31.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0195"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### ERVLB4_9q31.3 ### chr9 rmsk gene 111949200 111952521 . + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1061"; model_cov "1647"; model_pct "28.8"; chr9 rmsk exon 111949200 111949400 449 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-5005"; repStart "490"; chr9 rmsk exon 111949445 111949656 867 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "-4674"; repStart "806"; chr9 rmsk exon 111949951 111950215 867 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "1296"; repFamily "ERVL"; repLeft "-4418"; repStart "1041"; chr9 rmsk exon 111950513 111951152 867 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "1930"; repFamily "ERVL"; repLeft "-3784"; repStart "1297"; chr9 rmsk exon 111951290 111951400 425 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "2217"; repFamily "ERVL"; repLeft "-3497"; repStart "2105"; chr9 rmsk exon 111952372 111952521 550 + . gene_id "ERVLB4_9q31.3"; transcript_id "ERVLB4_9q31.3"; locus "ERVLB4_9q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1061"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "-806"; repStart "4714"; ### HERVL_9q32 ### chr9 rmsk gene 112373201 112376925 . - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0831"; model_cov "2590"; model_pct "45.8"; chr9 rmsk exon 112373201 112373580 2840 - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0831"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; chr9 rmsk exon 112373581 112376116 19929 - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0831"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3064"; repStart "0"; chr9 rmsk exon 112376133 112376198 2826 - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0831"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "389"; repStart "-1"; chr9 rmsk exon 112376237 112376252 2826 - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0831"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "380"; repStart "-56"; chr9 rmsk exon 112376552 112376925 2826 - . gene_id "HERVL_9q32"; transcript_id "HERVL_9q32"; locus "HERVL_9q32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0831"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "1"; repStart "-65"; ### HERVK11_9q32 ### chr9 rmsk gene 112391953 112400106 . - . gene_id "HERVK11_9q32"; transcript_id "HERVK11_9q32"; locus "HERVK11_9q32"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0059"; model_cov "7952"; model_pct "100.0"; chr9 rmsk exon 112391953 112392990 4477 - . gene_id "HERVK11_9q32"; transcript_id "HERVK11_9q32"; locus "HERVK11_9q32"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0059"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr9 rmsk exon 112392991 112399089 27312 - . gene_id "HERVK11_9q32"; transcript_id "HERVK11_9q32"; locus "HERVK11_9q32"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0059"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr9 rmsk exon 112399090 112400106 4663 - . gene_id "HERVK11_9q32"; transcript_id "HERVK11_9q32"; locus "HERVK11_9q32"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0059"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_9q32a ### chr9 rmsk gene 112907945 112910791 . + . gene_id "ERV316A3_9q32a"; transcript_id "ERV316A3_9q32a"; locus "ERV316A3_9q32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1747"; model_cov "2151"; model_pct "41.2"; chr9 rmsk exon 112907945 112907983 501 + . gene_id "ERV316A3_9q32a"; transcript_id "ERV316A3_9q32a"; locus "ERV316A3_9q32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1747"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2436"; repStart "2754"; chr9 rmsk exon 112908292 112908707 550 + . gene_id "ERV316A3_9q32a"; transcript_id "ERV316A3_9q32a"; locus "ERV316A3_9q32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1747"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-1931"; repStart "2753"; chr9 rmsk exon 112909119 112910663 2787 + . gene_id "ERV316A3_9q32a"; transcript_id "ERV316A3_9q32a"; locus "ERV316A3_9q32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1747"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "3607"; chr9 rmsk exon 112910693 112910791 230 + . gene_id "ERV316A3_9q32a"; transcript_id "ERV316A3_9q32a"; locus "ERV316A3_9q32a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1747"; repClass "LTR"; repEnd "107"; repFamily "ERVL"; repLeft "-331"; repStart "1"; ### ERVLE_9q32a ### chr9 rmsk gene 112917589 112918207 . - . gene_id "ERVLE_9q32a"; transcript_id "ERVLE_9q32a"; locus "ERVLE_9q32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2331"; model_cov "619"; model_pct "10.9"; chr9 rmsk exon 112917589 112918065 568 - . gene_id "ERVLE_9q32a"; transcript_id "ERVLE_9q32a"; locus "ERVLE_9q32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2331"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "4290"; repStart "-844"; chr9 rmsk exon 112918125 112918207 277 - . gene_id "ERVLE_9q32a"; transcript_id "ERVLE_9q32a"; locus "ERVLE_9q32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2331"; repClass "LTR"; repEnd "4220"; repFamily "ERVL"; repLeft "4134"; repStart "-1447"; ### HERVL40_9q32 ### chr9 rmsk gene 112937083 112938815 . + . gene_id "HERVL40_9q32"; transcript_id "HERVL40_9q32"; locus "HERVL40_9q32"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0271"; model_cov "775"; model_pct "14.0"; chr9 rmsk exon 112937083 112937251 673 + . gene_id "HERVL40_9q32"; transcript_id "HERVL40_9q32"; locus "HERVL40_9q32"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0271"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-2"; repStart "339"; chr9 rmsk exon 112937667 112938225 1758 + . gene_id "HERVL40_9q32"; transcript_id "HERVL40_9q32"; locus "HERVL40_9q32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0271"; repClass "LTR"; repEnd "3162"; repFamily "ERVL"; repLeft "-2368"; repStart "2583"; chr9 rmsk exon 112938619 112938815 587 + . gene_id "HERVL40_9q32"; transcript_id "HERVL40_9q32"; locus "HERVL40_9q32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0271"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-886"; repStart "4448"; ### ERVLE_9q32b ### chr9 rmsk gene 112982027 112984145 . - . gene_id "ERVLE_9q32b"; transcript_id "ERVLE_9q32b"; locus "ERVLE_9q32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2332"; model_cov "917"; model_pct "16.2"; chr9 rmsk exon 112982027 112982154 291 - . gene_id "ERVLE_9q32b"; transcript_id "ERVLE_9q32b"; locus "ERVLE_9q32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2332"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "4752"; repStart "-759"; chr9 rmsk exon 112982637 112983204 1416 - . gene_id "ERVLE_9q32b"; transcript_id "ERVLE_9q32b"; locus "ERVLE_9q32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2332"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "3999"; repStart "-1111"; chr9 rmsk exon 112983253 112983384 570 - . gene_id "ERVLE_9q32b"; transcript_id "ERVLE_9q32b"; locus "ERVLE_9q32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2332"; repClass "LTR"; repEnd "4221"; repFamily "ERVL"; repLeft "4088"; repStart "-1446"; chr9 rmsk exon 112984071 112984145 570 - . gene_id "ERVLE_9q32b"; transcript_id "ERVLE_9q32b"; locus "ERVLE_9q32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2332"; repClass "LTR"; repEnd "4087"; repFamily "ERVL"; repLeft "4016"; repStart "-1580"; ### ERV316A3_9q32b ### chr9 rmsk gene 113033663 113034667 . + . gene_id "ERV316A3_9q32b"; transcript_id "ERV316A3_9q32b"; locus "ERV316A3_9q32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1748"; model_cov "574"; model_pct "11.0"; chr9 rmsk exon 113033663 113034001 1023 + . gene_id "ERV316A3_9q32b"; transcript_id "ERV316A3_9q32b"; locus "ERV316A3_9q32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1748"; repClass "LTR"; repEnd "4860"; repFamily "ERVL"; repLeft "-366"; repStart "4472"; chr9 rmsk exon 113034070 113034246 622 + . gene_id "ERV316A3_9q32b"; transcript_id "ERV316A3_9q32b"; locus "ERV316A3_9q32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1748"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4990"; chr9 rmsk exon 113034293 113034667 976 + . gene_id "ERV316A3_9q32b"; transcript_id "ERV316A3_9q32b"; locus "ERV316A3_9q32b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1748"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-43"; repStart "1"; ### ERV316A3_9q33.1 ### chr9 rmsk gene 114972522 114973826 . + . gene_id "ERV316A3_9q33.1"; transcript_id "ERV316A3_9q33.1"; locus "ERV316A3_9q33.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1749"; model_cov "1160"; model_pct "22.2"; chr9 rmsk exon 114972522 114973330 2148 + . gene_id "ERV316A3_9q33.1"; transcript_id "ERV316A3_9q33.1"; locus "ERV316A3_9q33.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1749"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "-2261"; repStart "2144"; chr9 rmsk exon 114973337 114973826 753 + . gene_id "ERV316A3_9q33.1"; transcript_id "ERV316A3_9q33.1"; locus "ERV316A3_9q33.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1749"; repClass "LTR"; repEnd "3081"; repFamily "ERVL"; repLeft "-2145"; repStart "2742"; ### HERVH_9q33.1a ### chr9 rmsk gene 115174652 115180335 . - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0782"; model_cov "4906"; model_pct "63.6"; chr9 rmsk exon 115174652 115175062 2715 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 115175063 115175439 2209 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr9 rmsk exon 115175440 115175653 1271 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 115175655 115176316 3918 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr9 rmsk exon 115176319 115176821 3291 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr9 rmsk exon 115176812 115176958 803 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 115176953 115179923 19233 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr9 rmsk exon 115179926 115180335 2160 - . gene_id "HERVH_9q33.1a"; transcript_id "HERVH_9q33.1a"; locus "HERVH_9q33.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0782"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; ### HERVH_9q33.1b ### chr9 rmsk gene 115473181 115478918 . + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0783"; model_cov "4964"; model_pct "64.4"; chr9 rmsk exon 115473181 115473632 3422 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 115473632 115474252 3962 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "-7093"; repStart "1"; chr9 rmsk exon 115474254 115476760 15758 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "437"; chr9 rmsk exon 115476740 115476884 770 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr9 rmsk exon 115476875 115477377 3028 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr9 rmsk exon 115477382 115477996 2771 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr9 rmsk exon 115477998 115478147 921 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1965"; repStart "5600"; chr9 rmsk exon 115478149 115478466 2025 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7384"; chr9 rmsk exon 115478470 115478918 3469 + . gene_id "HERVH_9q33.1b"; transcript_id "HERVH_9q33.1b"; locus "HERVH_9q33.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0783"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### ERVLB4_9q33.1a ### chr9 rmsk gene 115676479 115680571 . + . gene_id "ERVLB4_9q33.1a"; transcript_id "ERVLB4_9q33.1a"; locus "ERVLB4_9q33.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1062"; model_cov "2769"; model_pct "48.5"; chr9 rmsk exon 115676479 115677675 6789 + . gene_id "ERVLB4_9q33.1a"; transcript_id "ERVLB4_9q33.1a"; locus "ERVLB4_9q33.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1062"; repClass "LTR"; repEnd "1250"; repFamily "ERVL"; repLeft "-4464"; repStart "25"; chr9 rmsk exon 115678120 115678218 6789 + . gene_id "ERVLB4_9q33.1a"; transcript_id "ERVLB4_9q33.1a"; locus "ERVLB4_9q33.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1062"; repClass "LTR"; repEnd "1349"; repFamily "ERVL"; repLeft "-4365"; repStart "1251"; chr9 rmsk exon 115678215 115679643 8366 + . gene_id "ERVLB4_9q33.1a"; transcript_id "ERVLB4_9q33.1a"; locus "ERVLB4_9q33.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1062"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4267"; chr9 rmsk exon 115680102 115680571 2176 + . gene_id "ERVLB4_9q33.1a"; transcript_id "ERVLB4_9q33.1a"; locus "ERVLB4_9q33.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1062"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "-2"; repStart "89"; ### HERVH_9q33.1c ### chr9 rmsk gene 115839178 115844929 . - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0784"; model_cov "4919"; model_pct "63.8"; chr9 rmsk exon 115839178 115839628 3476 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 115839629 115840008 2464 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr9 rmsk exon 115840007 115840229 1384 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr9 rmsk exon 115840227 115840891 4343 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr9 rmsk exon 115840894 115841398 3343 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr9 rmsk exon 115841389 115841538 955 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 115841518 115844476 16268 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr9 rmsk exon 115844479 115844929 3440 - . gene_id "HERVH_9q33.1c"; transcript_id "HERVH_9q33.1c"; locus "HERVH_9q33.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0784"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_9q33.1a ### chr9 rmsk gene 116674731 116679584 . + . gene_id "HUERSP1_9q33.1a"; transcript_id "HUERSP1_9q33.1a"; locus "HUERSP1_9q33.1a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0113"; model_cov "4580"; model_pct "73.1"; chr9 rmsk exon 116674731 116675040 2381 + . gene_id "HUERSP1_9q33.1a"; transcript_id "HUERSP1_9q33.1a"; locus "HUERSP1_9q33.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0113"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "389"; chr9 rmsk exon 116675041 116679584 35197 + . gene_id "HUERSP1_9q33.1a"; transcript_id "HUERSP1_9q33.1a"; locus "HUERSP1_9q33.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0113"; repClass "LTR"; repEnd "4581"; repFamily "ERV1"; repLeft "-1682"; repStart "1"; ### HUERSP1_9q33.1b ### chr9 rmsk gene 116683070 116685498 . + . gene_id "HUERSP1_9q33.1b"; transcript_id "HUERSP1_9q33.1b"; locus "HUERSP1_9q33.1b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0114"; model_cov "1695"; model_pct "27.1"; chr9 rmsk exon 116683070 116684809 12700 + . gene_id "HUERSP1_9q33.1b"; transcript_id "HUERSP1_9q33.1b"; locus "HUERSP1_9q33.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0114"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "4567"; chr9 rmsk exon 116684811 116685498 5626 + . gene_id "HUERSP1_9q33.1b"; transcript_id "HUERSP1_9q33.1b"; locus "HUERSP1_9q33.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0114"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_9q33.1 ### chr9 rmsk gene 118093386 118095379 . - . gene_id "ERVLE_9q33.1"; transcript_id "ERVLE_9q33.1"; locus "ERVLE_9q33.1"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2333"; model_cov "1509"; model_pct "26.6"; chr9 rmsk exon 118093386 118093929 2247 - . gene_id "ERVLE_9q33.1"; transcript_id "ERVLE_9q33.1"; locus "ERVLE_9q33.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2333"; repClass "LTR"; repEnd "5387"; repFamily "ERVL"; repLeft "4831"; repStart "-280"; chr9 rmsk exon 118093927 118094788 2412 - . gene_id "ERVLE_9q33.1"; transcript_id "ERVLE_9q33.1"; locus "ERVLE_9q33.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2333"; repClass "LTR"; repEnd "911"; repFamily "ERVL"; repLeft "-42"; repStart "-4756"; chr9 rmsk exon 118094793 118095379 2191 - . gene_id "ERVLE_9q33.1"; transcript_id "ERVLE_9q33.1"; locus "ERVLE_9q33.1"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2333"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_9q33.1d ### chr9 rmsk gene 118485633 118491397 . - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0785"; model_cov "4929"; model_pct "63.9"; chr9 rmsk exon 118485633 118486086 3296 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 118486087 118486466 2484 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr9 rmsk exon 118486465 118486553 615 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5727"; repStart "-1894"; chr9 rmsk exon 118486552 118487151 4133 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "5087"; repFamily "ERV1"; repLeft "4488"; repStart "-2626"; chr9 rmsk exon 118487154 118488007 6193 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr9 rmsk exon 118487987 118490945 20098 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr9 rmsk exon 118490948 118491397 3316 - . gene_id "HERVH_9q33.1d"; transcript_id "HERVH_9q33.1d"; locus "HERVH_9q33.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0785"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_9q33.1b ### chr9 rmsk gene 118831513 118833759 . + . gene_id "ERVLB4_9q33.1b"; transcript_id "ERVLB4_9q33.1b"; locus "ERVLB4_9q33.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1063"; model_cov "2059"; model_pct "36.0"; chr9 rmsk exon 118831513 118832140 3345 + . gene_id "ERVLB4_9q33.1b"; transcript_id "ERVLB4_9q33.1b"; locus "ERVLB4_9q33.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1063"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1947"; repStart "3116"; chr9 rmsk exon 118832140 118832927 7002 + . gene_id "ERVLB4_9q33.1b"; transcript_id "ERVLB4_9q33.1b"; locus "ERVLB4_9q33.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1063"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "-943"; repStart "3954"; chr9 rmsk exon 118833175 118833759 7002 + . gene_id "ERVLB4_9q33.1b"; transcript_id "ERVLB4_9q33.1b"; locus "ERVLB4_9q33.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1063"; repClass "LTR"; repEnd "5363"; repFamily "ERVL"; repLeft "-351"; repStart "4772"; ### ERVLE_9q33.2a ### chr9 rmsk gene 120093380 120094966 . + . gene_id "ERVLE_9q33.2a"; transcript_id "ERVLE_9q33.2a"; locus "ERVLE_9q33.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2335"; model_cov "1550"; model_pct "27.4"; chr9 rmsk exon 120093380 120094275 2333 + . gene_id "ERVLE_9q33.2a"; transcript_id "ERVLE_9q33.2a"; locus "ERVLE_9q33.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2335"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "-1237"; repStart "3499"; chr9 rmsk exon 120094386 120094531 329 + . gene_id "ERVLE_9q33.2a"; transcript_id "ERVLE_9q33.2a"; locus "ERVLE_9q33.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2335"; repClass "LTR"; repEnd "5031"; repFamily "ERVL"; repLeft "-636"; repStart "4871"; chr9 rmsk exon 120094622 120094966 488 + . gene_id "ERVLE_9q33.2a"; transcript_id "ERVLE_9q33.2a"; locus "ERVLE_9q33.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2335"; repClass "LTR"; repEnd "5291"; repFamily "ERVL"; repLeft "-376"; repStart "4832"; ### ERVL_9q33.2a ### chr9 rmsk gene 121232842 121234699 . - . gene_id "ERVL_9q33.2a"; transcript_id "ERVL_9q33.2a"; locus "ERVL_9q33.2a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0274"; model_cov "616"; model_pct "10.7"; chr9 rmsk exon 121232842 121232956 499 - . gene_id "ERVL_9q33.2a"; transcript_id "ERVL_9q33.2a"; locus "ERVL_9q33.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0274"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "4890"; repStart "-750"; chr9 rmsk exon 121233762 121233873 798 - . gene_id "ERVL_9q33.2a"; transcript_id "ERVL_9q33.2a"; locus "ERVL_9q33.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0274"; repClass "LTR"; repEnd "4902"; repFamily "ERVL"; repLeft "4781"; repStart "-855"; chr9 rmsk exon 121234328 121234699 798 - . gene_id "ERVL_9q33.2a"; transcript_id "ERVL_9q33.2a"; locus "ERVL_9q33.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0274"; repClass "LTR"; repEnd "4780"; repFamily "ERVL"; repLeft "4402"; repStart "-977"; ### ERVLE_9q33.2b ### chr9 rmsk gene 121394197 121398743 . - . gene_id "ERVLE_9q33.2b"; transcript_id "ERVLE_9q33.2b"; locus "ERVLE_9q33.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2336"; model_cov "2613"; model_pct "46.1"; chr9 rmsk exon 121394197 121395949 3449 - . gene_id "ERVLE_9q33.2b"; transcript_id "ERVLE_9q33.2b"; locus "ERVLE_9q33.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2336"; repClass "LTR"; repEnd "5507"; repFamily "ERVL"; repLeft "3511"; repStart "-160"; chr9 rmsk exon 121398130 121398474 911 - . gene_id "ERVLE_9q33.2b"; transcript_id "ERVLE_9q33.2b"; locus "ERVLE_9q33.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2336"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "3220"; repStart "-2091"; chr9 rmsk exon 121398506 121398743 661 - . gene_id "ERVLE_9q33.2b"; transcript_id "ERVLE_9q33.2b"; locus "ERVLE_9q33.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2336"; repClass "LTR"; repEnd "3168"; repFamily "ERVL"; repLeft "2907"; repStart "-2499"; ### ERVLE_9q33.2c ### chr9 rmsk gene 121430881 121435031 . + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2337"; model_cov "3872"; model_pct "68.3"; chr9 rmsk exon 121430881 121431134 406 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "-5285"; repStart "135"; chr9 rmsk exon 121431310 121431436 386 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "597"; repFamily "ERVL"; repLeft "-5070"; repStart "417"; chr9 rmsk exon 121431537 121432044 1047 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "-4369"; repStart "841"; chr9 rmsk exon 121432085 121432241 484 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "1768"; repFamily "ERVL"; repLeft "-3899"; repStart "1608"; chr9 rmsk exon 121432288 121433385 2667 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "3067"; repFamily "ERVL"; repLeft "-2600"; repStart "1882"; chr9 rmsk exon 121433494 121433596 326 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "3436"; repFamily "ERVL"; repLeft "-2231"; repStart "3330"; chr9 rmsk exon 121433596 121435031 1916 + . gene_id "ERVLE_9q33.2c"; transcript_id "ERVLE_9q33.2c"; locus "ERVLE_9q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2337"; repClass "LTR"; repEnd "5365"; repFamily "ERVL"; repLeft "-302"; repStart "3828"; ### ERVLB4_9q33.2 ### chr9 rmsk gene 121516950 121518856 . + . gene_id "ERVLB4_9q33.2"; transcript_id "ERVLB4_9q33.2"; locus "ERVLB4_9q33.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1066"; model_cov "1740"; model_pct "30.5"; chr9 rmsk exon 121516950 121517067 935 + . gene_id "ERVLB4_9q33.2"; transcript_id "ERVLB4_9q33.2"; locus "ERVLB4_9q33.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1066"; repClass "LTR"; repEnd "3096"; repFamily "ERVL"; repLeft "-2618"; repStart "2979"; chr9 rmsk exon 121517137 121518440 7868 + . gene_id "ERVLB4_9q33.2"; transcript_id "ERVLB4_9q33.2"; locus "ERVLB4_9q33.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1066"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "-1177"; repStart "3163"; chr9 rmsk exon 121518608 121518856 1339 + . gene_id "ERVLB4_9q33.2"; transcript_id "ERVLB4_9q33.2"; locus "ERVLB4_9q33.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1066"; repClass "LTR"; repEnd "4726"; repFamily "ERVL"; repLeft "-988"; repStart "4477"; ### LTR25_9q33.2 ### chr9 rmsk gene 121520592 121522193 . - . gene_id "LTR25_9q33.2"; transcript_id "LTR25_9q33.2"; locus "LTR25_9q33.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0078"; model_cov "1339"; model_pct "18.6"; chr9 rmsk exon 121520592 121521367 7330 - . gene_id "LTR25_9q33.2"; transcript_id "LTR25_9q33.2"; locus "LTR25_9q33.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0078"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "6480"; repStart "-2"; chr9 rmsk exon 121521567 121522193 7330 - . gene_id "LTR25_9q33.2"; transcript_id "LTR25_9q33.2"; locus "LTR25_9q33.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0078"; repClass "LTR"; repEnd "6479"; repFamily "ERV1"; repLeft "5846"; repStart "-709"; ### HERVH_9q33.2a ### chr9 rmsk gene 121790002 121796769 . + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0786"; model_cov "5944"; model_pct "77.1"; chr9 rmsk exon 121790002 121790450 3307 + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0786"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 121790453 121794367 8794 + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0786"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr9 rmsk exon 121794370 121795157 5899 + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0786"; repClass "LTR"; repEnd "5276"; repFamily "ERV1"; repLeft "-2437"; repStart "4488"; chr9 rmsk exon 121795157 121796319 8772 + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0786"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6549"; chr9 rmsk exon 121796320 121796769 3356 + . gene_id "HERVH_9q33.2a"; transcript_id "HERVH_9q33.2a"; locus "HERVH_9q33.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0786"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_9q33.2d ### chr9 rmsk gene 122178521 122178915 . - . gene_id "ERVLE_9q33.2d"; transcript_id "ERVLE_9q33.2d"; locus "ERVLE_9q33.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2338"; model_cov "573"; model_pct "10.1"; chr9 rmsk exon 122178521 122178915 1153 - . gene_id "ERVLE_9q33.2d"; transcript_id "ERVLE_9q33.2d"; locus "ERVLE_9q33.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2338"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "4781"; repStart "-313"; ### HUERSP1_9q33.2 ### chr9 rmsk gene 122416391 122422448 . - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0115"; model_cov "4938"; model_pct "78.8"; chr9 rmsk exon 122416391 122416739 3904 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "256"; repStart "-107"; chr9 rmsk exon 122417034 122417285 3904 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "1"; repStart "-436"; chr9 rmsk exon 122417286 122420554 14619 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "2764"; repStart "0"; chr9 rmsk exon 122420825 122421131 14619 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "2763"; repFamily "ERV1"; repLeft "2466"; repStart "-3500"; chr9 rmsk exon 122421136 122422303 7120 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "1143"; repFamily "ERV1"; repLeft "1"; repStart "-5120"; chr9 rmsk exon 122422304 122422448 1112 - . gene_id "HUERSP1_9q33.2"; transcript_id "HUERSP1_9q33.2"; locus "HUERSP1_9q33.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0115"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "546"; repStart "0"; ### HERVL66_9q33.2 ### chr9 rmsk gene 122489212 122490319 . - . gene_id "HERVL66_9q33.2"; transcript_id "HERVL66_9q33.2"; locus "HERVL66_9q33.2"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0016"; model_cov "635"; model_pct "14.7"; chr9 rmsk exon 122489212 122489364 684 - . gene_id "HERVL66_9q33.2"; transcript_id "HERVL66_9q33.2"; locus "HERVL66_9q33.2"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0016"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "336"; repStart "0"; chr9 rmsk exon 122489372 122489773 3108 - . gene_id "HERVL66_9q33.2"; transcript_id "HERVL66_9q33.2"; locus "HERVL66_9q33.2"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0016"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-211"; chr9 rmsk exon 122489774 122490319 3183 - . gene_id "HERVL66_9q33.2"; transcript_id "HERVL66_9q33.2"; locus "HERVL66_9q33.2"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0016"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3694"; repStart "0"; ### ERV316A3_9q33.2 ### chr9 rmsk gene 122501756 122504590 . - . gene_id "ERV316A3_9q33.2"; transcript_id "ERV316A3_9q33.2"; locus "ERV316A3_9q33.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1750"; model_cov "2243"; model_pct "42.9"; chr9 rmsk exon 122501756 122502208 1072 - . gene_id "ERV316A3_9q33.2"; transcript_id "ERV316A3_9q33.2"; locus "ERV316A3_9q33.2"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1750"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "21"; repStart "-4"; chr9 rmsk exon 122502356 122504170 2913 - . gene_id "ERV316A3_9q33.2"; transcript_id "ERV316A3_9q33.2"; locus "ERV316A3_9q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1750"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "3196"; repStart "-141"; chr9 rmsk exon 122504241 122504590 1034 - . gene_id "ERV316A3_9q33.2"; transcript_id "ERV316A3_9q33.2"; locus "ERV316A3_9q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1750"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "2734"; repStart "-2138"; ### HERVH_9q33.2b ### chr9 rmsk gene 122530607 122536148 . - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0787"; model_cov "4944"; model_pct "64.1"; chr9 rmsk exon 122530607 122531005 2578 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 122531006 122531248 1463 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7475"; repStart "0"; chr9 rmsk exon 122531265 122531480 1235 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 122531482 122532057 3646 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4575"; repStart "-2564"; chr9 rmsk exon 122532055 122532150 606 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4575"; repStart "-3043"; chr9 rmsk exon 122532148 122532329 1284 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4489"; repStart "-3043"; chr9 rmsk exon 122532333 122532837 3501 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr9 rmsk exon 122532828 122532972 813 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr9 rmsk exon 122532967 122535743 14544 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr9 rmsk exon 122535746 122536148 2610 - . gene_id "HERVH_9q33.2b"; transcript_id "HERVH_9q33.2b"; locus "HERVH_9q33.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0787"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVL_9q33.2b ### chr9 rmsk gene 122564048 122565612 . + . gene_id "ERVL_9q33.2b"; transcript_id "ERVL_9q33.2b"; locus "ERVL_9q33.2b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0276"; model_cov "1548"; model_pct "26.9"; chr9 rmsk exon 122564048 122565186 6574 + . gene_id "ERVL_9q33.2b"; transcript_id "ERVL_9q33.2b"; locus "ERVL_9q33.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0276"; repClass "LTR"; repEnd "3041"; repFamily "ERVL"; repLeft "-2716"; repStart "1925"; chr9 rmsk exon 122565187 122565612 2888 + . gene_id "ERVL_9q33.2b"; transcript_id "ERVL_9q33.2b"; locus "ERVL_9q33.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0276"; repClass "LTR"; repEnd "4334"; repFamily "ERVL"; repLeft "-1423"; repStart "3902"; ### HML3_9q33.2 ### chr9 rmsk gene 122619563 122621428 . - . gene_id "HML3_9q33.2"; transcript_id "HML3_9q33.2"; locus "HML3_9q33.2"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0149"; model_cov "1384"; model_pct "23.0"; chr9 rmsk exon 122619563 122620338 5743 - . gene_id "HML3_9q33.2"; transcript_id "HML3_9q33.2"; locus "HML3_9q33.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0149"; repClass "LTR"; repEnd "1931"; repFamily "ERVK"; repLeft "1126"; repStart "-4090"; chr9 rmsk exon 122620341 122620919 4194 - . gene_id "HML3_9q33.2"; transcript_id "HML3_9q33.2"; locus "HML3_9q33.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0149"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr9 rmsk exon 122620920 122621428 4134 - . gene_id "HML3_9q33.2"; transcript_id "HML3_9q33.2"; locus "HML3_9q33.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0149"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_9q33.3a ### chr9 rmsk gene 124203429 124206217 . - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2339"; model_cov "1371"; model_pct "24.2"; chr9 rmsk exon 124203429 124203614 878 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "312"; repFamily "ERVL"; repLeft "96"; repStart "-351"; chr9 rmsk exon 124203911 124204014 878 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "1"; repStart "-568"; chr9 rmsk exon 124204024 124204326 1169 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "2621"; repFamily "ERVL"; repLeft "2333"; repStart "-3046"; chr9 rmsk exon 124204638 124204804 1169 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "2169"; repStart "-3335"; chr9 rmsk exon 124204802 124204832 373 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "1853"; repFamily "ERVL"; repLeft "1828"; repStart "-3814"; chr9 rmsk exon 124205128 124205234 373 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "1827"; repFamily "ERVL"; repLeft "1721"; repStart "-3840"; chr9 rmsk exon 124205430 124206217 1012 - . gene_id "ERVLE_9q33.3a"; transcript_id "ERVLE_9q33.3a"; locus "ERVLE_9q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2339"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "672"; repStart "-4206"; ### ERVLB4_9q33.3a ### chr9 rmsk gene 124430352 124434712 . - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1067"; model_cov "2141"; model_pct "37.5"; chr9 rmsk exon 124430352 124430788 934 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "3508"; repFamily "ERVL"; repLeft "3091"; repStart "-2206"; chr9 rmsk exon 124431591 124431847 848 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "2840"; repFamily "ERVL"; repLeft "2427"; repStart "-2874"; chr9 rmsk exon 124432150 124432343 848 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "2581"; repFamily "ERVL"; repLeft "2206"; repStart "-3133"; chr9 rmsk exon 124432358 124432790 405 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "1279"; repFamily "ERVL"; repLeft "834"; repStart "-4435"; chr9 rmsk exon 124433596 124433857 279 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "1229"; repFamily "ERVL"; repLeft "979"; repStart "-4485"; chr9 rmsk exon 124434480 124434712 288 - . gene_id "ERVLB4_9q33.3a"; transcript_id "ERVLB4_9q33.3a"; locus "ERVLB4_9q33.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1067"; repClass "LTR"; repEnd "960"; repFamily "ERVL"; repLeft "719"; repStart "-4754"; ### MER41_9q33.3 ### chr9 rmsk gene 125567193 125569637 . + . gene_id "MER41_9q33.3"; transcript_id "MER41_9q33.3"; locus "MER41_9q33.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0335"; model_cov "2027"; model_pct "34.1"; chr9 rmsk exon 125567193 125567732 4425 + . gene_id "MER41_9q33.3"; transcript_id "MER41_9q33.3"; locus "MER41_9q33.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0335"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 125567817 125567896 299 + . gene_id "MER41_9q33.3"; transcript_id "MER41_9q33.3"; locus "MER41_9q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0335"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "1"; chr9 rmsk exon 125567906 125569515 9409 + . gene_id "MER41_9q33.3"; transcript_id "MER41_9q33.3"; locus "MER41_9q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0335"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "1"; chr9 rmsk exon 125569504 125569637 702 + . gene_id "MER41_9q33.3"; transcript_id "MER41_9q33.3"; locus "MER41_9q33.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0335"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-4908"; repStart "886"; ### PABLA_9q33.3 ### chr9 rmsk gene 125569634 125573107 . + . gene_id "PABLA_9q33.3"; transcript_id "PABLA_9q33.3"; locus "PABLA_9q33.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0092"; model_cov "4599"; model_pct "91.7"; chr9 rmsk exon 125569634 125569679 268 + . gene_id "PABLA_9q33.3"; transcript_id "PABLA_9q33.3"; locus "PABLA_9q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0092"; repClass "LTR"; repEnd "1289"; repFamily "ERV1"; repLeft "-3726"; repStart "1236"; chr9 rmsk exon 125569676 125571574 10793 + . gene_id "PABLA_9q33.3"; transcript_id "PABLA_9q33.3"; locus "PABLA_9q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0092"; repClass "LTR"; repEnd "3695"; repFamily "ERV1"; repLeft "-1320"; repStart "1278"; chr9 rmsk exon 125571884 125573107 10793 + . gene_id "PABLA_9q33.3"; transcript_id "PABLA_9q33.3"; locus "PABLA_9q33.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0092"; repClass "LTR"; repEnd "5010"; repFamily "ERV1"; repLeft "-5"; repStart "2881"; ### ERV316A3_9q33.3 ### chr9 rmsk gene 125612666 125613700 . + . gene_id "ERV316A3_9q33.3"; transcript_id "ERV316A3_9q33.3"; locus "ERV316A3_9q33.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1751"; model_cov "744"; model_pct "14.2"; chr9 rmsk exon 125612666 125613142 1155 + . gene_id "ERV316A3_9q33.3"; transcript_id "ERV316A3_9q33.3"; locus "ERV316A3_9q33.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1751"; repClass "LTR"; repEnd "4913"; repFamily "ERVL"; repLeft "-313"; repStart "4169"; chr9 rmsk exon 125613259 125613700 1934 + . gene_id "ERV316A3_9q33.3"; transcript_id "ERV316A3_9q33.3"; locus "ERV316A3_9q33.3"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1751"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### HERVH_9q33.3a ### chr9 rmsk gene 126074450 126080414 . - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0788"; model_cov "5261"; model_pct "68.2"; chr9 rmsk exon 126074450 126074847 2867 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr9 rmsk exon 126074848 126075224 2309 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr9 rmsk exon 126075225 126075440 1350 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr9 rmsk exon 126075442 126076105 4394 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr9 rmsk exon 126076108 126080015 16407 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr9 rmsk exon 126080018 126080414 2770 - . gene_id "HERVH_9q33.3a"; transcript_id "HERVH_9q33.3a"; locus "HERVH_9q33.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0788"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_9q33.3b ### chr9 rmsk gene 126567532 126573829 . - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1068"; model_cov "4476"; model_pct "78.3"; chr9 rmsk exon 126567532 126568040 2688 - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1068"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr9 rmsk exon 126568044 126568478 32507 - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1068"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5285"; repStart "0"; chr9 rmsk exon 126568767 126572666 32507 - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1068"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "1312"; repStart "-430"; chr9 rmsk exon 126573069 126573154 32507 - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1068"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "1236"; repStart "-4403"; chr9 rmsk exon 126573801 126573829 32507 - . gene_id "ERVLB4_9q33.3b"; transcript_id "ERVLB4_9q33.3b"; locus "ERVLB4_9q33.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1068"; repClass "LTR"; repEnd "1231"; repFamily "ERVL"; repLeft "1231"; repStart "-4483"; ### ERVLB4_9q33.3c ### chr9 rmsk gene 126574454 126575939 . - . gene_id "ERVLB4_9q33.3c"; transcript_id "ERVLB4_9q33.3c"; locus "ERVLB4_9q33.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1070"; model_cov "1228"; model_pct "21.5"; chr9 rmsk exon 126574454 126575666 32507 - . gene_id "ERVLB4_9q33.3c"; transcript_id "ERVLB4_9q33.3c"; locus "ERVLB4_9q33.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1070"; repClass "LTR"; repEnd "1231"; repFamily "ERVL"; repLeft "34"; repStart "-4483"; chr9 rmsk exon 126575904 126575939 32507 - . gene_id "ERVLB4_9q33.3c"; transcript_id "ERVLB4_9q33.3c"; locus "ERVLB4_9q33.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1070"; repClass "LTR"; repEnd "33"; repFamily "ERVL"; repLeft "2"; repStart "-5681"; ### ERVLE_9q33.3b ### chr9 rmsk gene 126738046 126743694 . - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2341"; model_cov "3759"; model_pct "66.3"; chr9 rmsk exon 126738046 126739013 9402 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "5339"; repFamily "ERVL"; repLeft "4368"; repStart "-328"; chr9 rmsk exon 126739452 126740414 9402 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "4367"; repFamily "ERVL"; repLeft "3373"; repStart "-1300"; chr9 rmsk exon 126740444 126740562 583 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "2029"; repFamily "ERVL"; repLeft "1911"; repStart "-3638"; chr9 rmsk exon 126740708 126741054 1335 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "1665"; repFamily "ERVL"; repLeft "1285"; repStart "-4002"; chr9 rmsk exon 126741412 126742402 4430 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "1289"; repFamily "ERVL"; repLeft "275"; repStart "-4378"; chr9 rmsk exon 126742841 126743126 1227 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "284"; repFamily "ERVL"; repLeft "2"; repStart "-5383"; chr9 rmsk exon 126743128 126743470 1277 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "264"; repStart "0"; chr9 rmsk exon 126743630 126743694 317 - . gene_id "ERVLE_9q33.3b"; transcript_id "ERVLE_9q33.3b"; locus "ERVLE_9q33.3b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2341"; repClass "LTR"; repEnd "65"; repFamily "ERVL"; repLeft "1"; repStart "-563"; ### ERVLE_9q33.3c ### chr9 rmsk gene 126897449 126905176 . + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2342"; model_cov "2375"; model_pct "41.9"; chr9 rmsk exon 126897449 126898097 1434 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "1092"; repFamily "ERVL"; repLeft "-4575"; repStart "433"; chr9 rmsk exon 126898088 126898162 508 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "1444"; repFamily "ERVL"; repLeft "-4223"; repStart "1384"; chr9 rmsk exon 126898792 126898962 508 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "-4051"; repStart "1445"; chr9 rmsk exon 126901044 126901497 1651 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "2356"; repFamily "ERVL"; repLeft "-3311"; repStart "1897"; chr9 rmsk exon 126903079 126903199 3256 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "-3172"; repStart "2372"; chr9 rmsk exon 126903510 126903712 3256 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "-2985"; repStart "2496"; chr9 rmsk exon 126904484 126905176 3256 + . gene_id "ERVLE_9q33.3c"; transcript_id "ERVLE_9q33.3c"; locus "ERVLE_9q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2342"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "-2267"; repStart "2683"; ### HERVH_9q33.3b ### chr9 rmsk gene 127413306 127415068 . + . gene_id "HERVH_9q33.3b"; transcript_id "HERVH_9q33.3b"; locus "HERVH_9q33.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0789"; model_cov "1083"; model_pct "14.0"; chr9 rmsk exon 127413306 127413662 2030 + . gene_id "HERVH_9q33.3b"; transcript_id "HERVH_9q33.3b"; locus "HERVH_9q33.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0789"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr9 rmsk exon 127413663 127413947 2610 + . gene_id "HERVH_9q33.3b"; transcript_id "HERVH_9q33.3b"; locus "HERVH_9q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0789"; repClass "LTR"; repEnd "289"; repFamily "ERV1"; repLeft "-7424"; repStart "1"; chr9 rmsk exon 127414257 127414475 2610 + . gene_id "HERVH_9q33.3b"; transcript_id "HERVH_9q33.3b"; locus "HERVH_9q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0789"; repClass "LTR"; repEnd "496"; repFamily "ERV1"; repLeft "-7217"; repStart "290"; chr9 rmsk exon 127414474 127415068 3118 + . gene_id "HERVH_9q33.3b"; transcript_id "HERVH_9q33.3b"; locus "HERVH_9q33.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0789"; repClass "LTR"; repEnd "1367"; repFamily "ERV1"; repLeft "-6346"; repStart "778"; ### HML2_9q34.11 ### chr9 rmsk gene 128850236 128857457 . + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0077"; model_cov "7533"; model_pct "100.0"; chr9 rmsk exon 128850236 128851238 7849 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr9 rmsk exon 128851239 128856449 16412 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr9 rmsk exon 128856452 128857457 7931 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVFH19_9q34.11 ### chr9 rmsk gene 129588167 129594670 . - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0025"; model_cov "4727"; model_pct "61.2"; chr9 rmsk exon 129588167 129589362 4548 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "6423"; repStart "0"; chr9 rmsk exon 129589668 129590242 4548 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "6422"; repFamily "ERV1"; repLeft "5873"; repStart "-1297"; chr9 rmsk exon 129590546 129591221 4548 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "5872"; repFamily "ERV1"; repLeft "5205"; repStart "-1847"; chr9 rmsk exon 129591831 129592638 6612 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "4634"; repFamily "ERV1"; repLeft "3827"; repStart "-3085"; chr9 rmsk exon 129592942 129593714 6612 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "3826"; repFamily "ERV1"; repLeft "3063"; repStart "-3893"; chr9 rmsk exon 129594014 129594670 6612 - . gene_id "HERVFH19_9q34.11"; transcript_id "HERVFH19_9q34.11"; locus "HERVFH19_9q34.11"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0025"; repClass "LTR"; repEnd "3062"; repFamily "ERV1"; repLeft "2417"; repStart "-4657"; ### LTR19_9q34.11 ### chr9 rmsk gene 129594670 129595729 . - . gene_id "LTR19_9q34.11"; transcript_id "LTR19_9q34.11"; locus "LTR19_9q34.11"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0028"; model_cov "961"; model_pct "17.2"; chr9 rmsk exon 129594670 129595568 1494 - . gene_id "LTR19_9q34.11"; transcript_id "LTR19_9q34.11"; locus "LTR19_9q34.11"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0028"; repClass "LTR"; repEnd "963"; repFamily "ERV1"; repLeft "2"; repStart "-4623"; chr9 rmsk exon 129595579 129595729 333 - . gene_id "LTR19_9q34.11"; transcript_id "LTR19_9q34.11"; locus "LTR19_9q34.11"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0028"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "248"; repStart "-10"; ### ERVLB4_9q34.11 ### chr9 rmsk gene 129766904 129771287 . - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1071"; model_cov "2604"; model_pct "45.6"; chr9 rmsk exon 129766904 129767082 1397 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "201"; repFamily "ERVL"; repLeft "1"; repStart "-319"; chr9 rmsk exon 129767083 129767356 5362 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5410"; repStart "0"; chr9 rmsk exon 129767384 129767554 5362 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "5409"; repFamily "ERVL"; repLeft "5228"; repStart "-305"; chr9 rmsk exon 129767828 129767963 5362 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "5227"; repFamily "ERVL"; repLeft "5085"; repStart "-487"; chr9 rmsk exon 129768268 129768682 5362 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4673"; repStart "-630"; chr9 rmsk exon 129769284 129769753 2836 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "3788"; repFamily "ERVL"; repLeft "3310"; repStart "-1926"; chr9 rmsk exon 129769749 129770040 1592 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "3075"; repFamily "ERVL"; repLeft "2768"; repStart "-2639"; chr9 rmsk exon 129770543 129770582 274 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "2762"; repFamily "ERVL"; repLeft "2723"; repStart "-2952"; chr9 rmsk exon 129770590 129771287 4097 - . gene_id "ERVLB4_9q34.11"; transcript_id "ERVLB4_9q34.11"; locus "ERVLB4_9q34.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1071"; repClass "LTR"; repEnd "2463"; repFamily "ERVL"; repLeft "1721"; repStart "-3251"; ### ERV316A3_9q34.12 ### chr9 rmsk gene 131001251 131004495 . - . gene_id "ERV316A3_9q34.12"; transcript_id "ERV316A3_9q34.12"; locus "ERV316A3_9q34.12"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1755"; model_cov "1276"; model_pct "24.4"; chr9 rmsk exon 131001251 131002022 874 - . gene_id "ERV316A3_9q34.12"; transcript_id "ERV316A3_9q34.12"; locus "ERV316A3_9q34.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1755"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "2287"; repStart "-1993"; chr9 rmsk exon 131004186 131004495 807 - . gene_id "ERV316A3_9q34.12"; transcript_id "ERV316A3_9q34.12"; locus "ERV316A3_9q34.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1755"; repClass "LTR"; repEnd "284"; repFamily "ERVL"; repLeft "-46"; repStart "-4942"; ### HERVH_9q34.13 ### chr9 rmsk gene 131547214 131551936 . + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0791"; model_cov "3464"; model_pct "44.9"; chr9 rmsk exon 131547214 131547620 2739 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr9 rmsk exon 131547623 131548091 2736 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr9 rmsk exon 131548147 131548718 11658 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "1277"; repFamily "ERV1"; repLeft "-6436"; repStart "694"; chr9 rmsk exon 131548809 131550487 11658 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1278"; chr9 rmsk exon 131550467 131550615 820 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "-4426"; repStart "3140"; chr9 rmsk exon 131550618 131550789 1000 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "3671"; repFamily "ERV1"; repLeft "-4042"; repStart "3500"; chr9 rmsk exon 131550807 131550930 2235 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "7444"; repFamily "ERV1"; repLeft "-269"; repStart "7324"; chr9 rmsk exon 131551242 131551528 2235 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7445"; chr9 rmsk exon 131551529 131551936 2872 + . gene_id "HERVH_9q34.13"; transcript_id "HERVH_9q34.13"; locus "HERVH_9q34.13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0791"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_9q34.13 ### chr9 rmsk gene 131680373 131685811 . + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0150"; model_cov "4468"; model_pct "74.2"; chr9 rmsk exon 131680373 131680884 4322 + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0150"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr9 rmsk exon 131680885 131683649 23128 + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0150"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr9 rmsk exon 131683650 131685118 12618 + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0150"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "-825"; repStart "3723"; chr9 rmsk exon 131685107 131685300 1497 + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0150"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5823"; chr9 rmsk exon 131685301 131685811 4341 + . gene_id "HML3_9q34.13"; transcript_id "HML3_9q34.13"; locus "HML3_9q34.13"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0150"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_9q34.13 ### chr9 rmsk gene 131993386 131996590 . + . gene_id "ERV316A3_9q34.13"; transcript_id "ERV316A3_9q34.13"; locus "ERV316A3_9q34.13"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1757"; model_cov "2567"; model_pct "49.1"; chr9 rmsk exon 131993386 131993513 248 + . gene_id "ERV316A3_9q34.13"; transcript_id "ERV316A3_9q34.13"; locus "ERV316A3_9q34.13"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1757"; repClass "LTR"; repEnd "143"; repFamily "ERVL"; repLeft "-308"; repStart "2"; chr9 rmsk exon 131993517 131993690 2159 + . gene_id "ERV316A3_9q34.13"; transcript_id "ERV316A3_9q34.13"; locus "ERV316A3_9q34.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1757"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "-3238"; repStart "1819"; chr9 rmsk exon 131994265 131994781 2159 + . gene_id "ERV316A3_9q34.13"; transcript_id "ERV316A3_9q34.13"; locus "ERV316A3_9q34.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1757"; repClass "LTR"; repEnd "2499"; repFamily "ERVL"; repLeft "-2727"; repStart "1989"; chr9 rmsk exon 131994787 131996590 5382 + . gene_id "ERV316A3_9q34.13"; transcript_id "ERV316A3_9q34.13"; locus "ERV316A3_9q34.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1757"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "3330"; ### MER101_9q34.13 ### chr9 rmsk gene 132703084 132704839 . + . gene_id "MER101_9q34.13"; transcript_id "MER101_9q34.13"; locus "MER101_9q34.13"; category "internal"; intModel "MER101-int"; locid "MER101-int_0247"; model_cov "1130"; model_pct "17.0"; chr9 rmsk exon 132703084 132703187 293 + . gene_id "MER101_9q34.13"; transcript_id "MER101_9q34.13"; locus "MER101_9q34.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0247"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4282"; repStart "2250"; chr9 rmsk exon 132703236 132703757 4536 + . gene_id "MER101_9q34.13"; transcript_id "MER101_9q34.13"; locus "MER101_9q34.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0247"; repClass "LTR"; repEnd "3328"; repFamily "ERV1"; repLeft "-3311"; repStart "2760"; chr9 rmsk exon 132704050 132704097 4536 + . gene_id "MER101_9q34.13"; transcript_id "MER101_9q34.13"; locus "MER101_9q34.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0247"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-3295"; repStart "3329"; chr9 rmsk exon 132704429 132704839 4536 + . gene_id "MER101_9q34.13"; transcript_id "MER101_9q34.13"; locus "MER101_9q34.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0247"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "-2854"; repStart "3345"; ### HERVI_9q34.13 ### chr9 rmsk gene 133031580 133038234 . - . gene_id "HERVI_9q34.13"; transcript_id "HERVI_9q34.13"; locus "HERVI_9q34.13"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0021"; model_cov "5260"; model_pct "67.6"; chr9 rmsk exon 133031580 133032062 2466 - . gene_id "HERVI_9q34.13"; transcript_id "HERVI_9q34.13"; locus "HERVI_9q34.13"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0021"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "4"; repStart "-62"; chr9 rmsk exon 133032229 133032533 865 - . gene_id "HERVI_9q34.13"; transcript_id "HERVI_9q34.13"; locus "HERVI_9q34.13"; repName "LTR10B"; geneRegion "ltr"; locid "HERVI-int_0021"; repClass "LTR"; repEnd "368"; repFamily "ERV1"; repLeft "7"; repStart "-137"; chr9 rmsk exon 133032543 133037838 26289 - . gene_id "HERVI_9q34.13"; transcript_id "HERVI_9q34.13"; locus "HERVI_9q34.13"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0021"; repClass "LTR"; repEnd "7784"; repFamily "ERV1"; repLeft "2524"; repStart "-1"; chr9 rmsk exon 133037889 133038234 864 - . gene_id "HERVI_9q34.13"; transcript_id "HERVI_9q34.13"; locus "HERVI_9q34.13"; repName "LTR10B"; geneRegion "ltr"; locid "HERVI-int_0021"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "4"; repStart "-71"; ### HERV3_9q34.13 ### chr9 rmsk gene 133075826 133080083 . - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0038"; model_cov "3805"; model_pct "45.2"; chr9 rmsk exon 133075826 133076298 2892 - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0038"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "64"; repStart "0"; chr9 rmsk exon 133076309 133079550 16025 - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0038"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "5148"; repStart "0"; chr9 rmsk exon 133079541 133079664 739 - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0038"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "3701"; repStart "-4602"; chr9 rmsk exon 133079657 133079871 1867 - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0038"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "2262"; repStart "-5950"; chr9 rmsk exon 133079900 133080083 1867 - . gene_id "HERV3_9q34.13"; transcript_id "HERV3_9q34.13"; locus "HERV3_9q34.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0038"; repClass "LTR"; repEnd "2261"; repFamily "ERV1"; repLeft "2071"; repStart "-6165"; ### HUERSP1_9q34.2 ### chr9 rmsk gene 133287145 133294354 . - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0116"; model_cov "6218"; model_pct "99.3"; chr9 rmsk exon 133287145 133287673 22905 - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0116"; repClass "LTR"; repEnd "5734"; repFamily "ERV1"; repLeft "4721"; repStart "-529"; chr9 rmsk exon 133287981 133288315 22905 - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0116"; repClass "LTR"; repEnd "5226"; repFamily "ERV1"; repLeft "4911"; repStart "-1037"; chr9 rmsk exon 133288617 133289988 29061 - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0116"; repClass "LTR"; repEnd "4740"; repFamily "ERV1"; repLeft "3387"; repStart "-1523"; chr9 rmsk exon 133290288 133293656 29061 - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0116"; repClass "LTR"; repEnd "3538"; repFamily "ERV1"; repLeft "1"; repStart "-2725"; chr9 rmsk exon 133293657 133294354 4684 - . gene_id "HUERSP1_9q34.2"; transcript_id "HUERSP1_9q34.2"; locus "HUERSP1_9q34.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0116"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_9q34.2a ### chr9 rmsk gene 133549683 133553929 . - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1760"; model_cov "3135"; model_pct "60.0"; chr9 rmsk exon 133549683 133549993 709 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "4466"; repStart "-436"; chr9 rmsk exon 133550277 133551812 4460 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "4466"; repFamily "ERVL"; repLeft "2883"; repStart "-760"; chr9 rmsk exon 133552128 133552833 4460 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "2882"; repFamily "ERVL"; repLeft "2166"; repStart "-2344"; chr9 rmsk exon 133552808 133552941 310 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "1346"; repFamily "ERVL"; repLeft "1212"; repStart "-3880"; chr9 rmsk exon 133552959 133553315 609 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "718"; repStart "-4130"; chr9 rmsk exon 133553751 133553929 490 - . gene_id "ERV316A3_9q34.2a"; transcript_id "ERV316A3_9q34.2a"; locus "ERV316A3_9q34.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1760"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "187"; repStart "-73"; ### ERVLE_9q34.2 ### chr9 rmsk gene 134010148 134011797 . + . gene_id "ERVLE_9q34.2"; transcript_id "ERVLE_9q34.2"; locus "ERVLE_9q34.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2346"; model_cov "1248"; model_pct "22.0"; chr9 rmsk exon 134010148 134010798 1139 + . gene_id "ERVLE_9q34.2"; transcript_id "ERVLE_9q34.2"; locus "ERVLE_9q34.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2346"; repClass "LTR"; repEnd "4447"; repFamily "ERVL"; repLeft "-1220"; repStart "3762"; chr9 rmsk exon 134010954 134011253 278 + . gene_id "ERVLE_9q34.2"; transcript_id "ERVLE_9q34.2"; locus "ERVLE_9q34.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2346"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "-913"; repStart "4420"; chr9 rmsk exon 134011566 134011797 278 + . gene_id "ERVLE_9q34.2"; transcript_id "ERVLE_9q34.2"; locus "ERVLE_9q34.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2346"; repClass "LTR"; repEnd "5410"; repFamily "ERVL"; repLeft "-257"; repStart "5181"; ### ERV316A3_9q34.2b ### chr9 rmsk gene 134496237 134496992 . - . gene_id "ERV316A3_9q34.2b"; transcript_id "ERV316A3_9q34.2b"; locus "ERV316A3_9q34.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1762"; model_cov "533"; model_pct "10.2"; chr9 rmsk exon 134496237 134496552 267 - . gene_id "ERV316A3_9q34.2b"; transcript_id "ERV316A3_9q34.2b"; locus "ERV316A3_9q34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1762"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "4065"; repStart "-821"; chr9 rmsk exon 134496807 134496992 476 - . gene_id "ERV316A3_9q34.2b"; transcript_id "ERV316A3_9q34.2b"; locus "ERV316A3_9q34.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1762"; repClass "LTR"; repEnd "3751"; repFamily "ERVL"; repLeft "3558"; repStart "-1475"; ### ERV316A3_9q34.3a ### chr9 rmsk gene 134547123 134548225 . - . gene_id "ERV316A3_9q34.3a"; transcript_id "ERV316A3_9q34.3a"; locus "ERV316A3_9q34.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1763"; model_cov "575"; model_pct "11.0"; chr9 rmsk exon 134547123 134547544 787 - . gene_id "ERV316A3_9q34.3a"; transcript_id "ERV316A3_9q34.3a"; locus "ERV316A3_9q34.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1763"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr9 rmsk exon 134547574 134547867 397 - . gene_id "ERV316A3_9q34.3a"; transcript_id "ERV316A3_9q34.3a"; locus "ERV316A3_9q34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1763"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "4855"; repStart "-57"; chr9 rmsk exon 134547970 134548225 354 - . gene_id "ERV316A3_9q34.3a"; transcript_id "ERV316A3_9q34.3a"; locus "ERV316A3_9q34.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1763"; repClass "LTR"; repEnd "4485"; repFamily "ERVL"; repLeft "4224"; repStart "-741"; ### HERVL_9q34.3 ### chr9 rmsk gene 134924024 134928569 . + . gene_id "HERVL_9q34.3"; transcript_id "HERVL_9q34.3"; locus "HERVL_9q34.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0833"; model_cov "3361"; model_pct "59.4"; chr9 rmsk exon 134924024 134926313 24696 + . gene_id "HERVL_9q34.3"; transcript_id "HERVL_9q34.3"; locus "HERVL_9q34.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0833"; repClass "LTR"; repEnd "4602"; repFamily "ERVL"; repLeft "-1052"; repStart "2291"; chr9 rmsk exon 134926624 134927286 24696 + . gene_id "HERVL_9q34.3"; transcript_id "HERVL_9q34.3"; locus "HERVL_9q34.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0833"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "-426"; repStart "4603"; chr9 rmsk exon 134927595 134928027 24696 + . gene_id "HERVL_9q34.3"; transcript_id "HERVL_9q34.3"; locus "HERVL_9q34.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0833"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5229"; chr9 rmsk exon 134928028 134928569 1995 + . gene_id "HERVL_9q34.3"; transcript_id "HERVL_9q34.3"; locus "HERVL_9q34.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0833"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLE_9q34.3a ### chr9 rmsk gene 134957571 134959257 . - . gene_id "ERVLE_9q34.3a"; transcript_id "ERVLE_9q34.3a"; locus "ERVLE_9q34.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2347"; model_cov "638"; model_pct "11.3"; chr9 rmsk exon 134957571 134957638 281 - . gene_id "ERVLE_9q34.3a"; transcript_id "ERVLE_9q34.3a"; locus "ERVLE_9q34.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2347"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "584"; repStart "-8"; chr9 rmsk exon 134957788 134958152 962 - . gene_id "ERVLE_9q34.3a"; transcript_id "ERVLE_9q34.3a"; locus "ERVLE_9q34.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2347"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "2"; repStart "-268"; chr9 rmsk exon 134958154 134958392 845 - . gene_id "ERVLE_9q34.3a"; transcript_id "ERVLE_9q34.3a"; locus "ERVLE_9q34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2347"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5413"; repStart "0"; chr9 rmsk exon 134958960 134959257 768 - . gene_id "ERVLE_9q34.3a"; transcript_id "ERVLE_9q34.3a"; locus "ERVLE_9q34.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2347"; repClass "LTR"; repEnd "5415"; repFamily "ERVL"; repLeft "5031"; repStart "-252"; ### HERVP71A_9q34.3 ### chr9 rmsk gene 135290605 135296267 . + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0047"; model_cov "3899"; model_pct "51.4"; chr9 rmsk exon 135290605 135291175 2983 + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0047"; repClass "LTR"; repEnd "1781"; repFamily "ERV1"; repLeft "-5809"; repStart "1245"; chr9 rmsk exon 135291686 135293327 17428 + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0047"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "-2373"; repStart "3541"; chr9 rmsk exon 135293648 135294706 17428 + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0047"; repClass "LTR"; repEnd "6304"; repFamily "ERV1"; repLeft "-1286"; repStart "5218"; chr9 rmsk exon 135295004 135295615 17428 + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0047"; repClass "LTR"; repEnd "6906"; repFamily "ERV1"; repLeft "-684"; repStart "6305"; chr9 rmsk exon 135295677 135296267 4550 + . gene_id "HERVP71A_9q34.3"; transcript_id "HERVP71A_9q34.3"; locus "HERVP71A_9q34.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0047"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_9q34.3b ### chr9 rmsk gene 135378186 135382106 . - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1764"; model_cov "1911"; model_pct "36.6"; chr9 rmsk exon 135378186 135378611 1040 - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1764"; repClass "LTR"; repEnd "4913"; repFamily "ERVL"; repLeft "4466"; repStart "-313"; chr9 rmsk exon 135378739 135378919 427 - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1764"; repClass "LTR"; repEnd "4282"; repFamily "ERVL"; repLeft "4101"; repStart "-944"; chr9 rmsk exon 135379846 135380157 801 - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1764"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "3765"; repStart "-1122"; chr9 rmsk exon 135380832 135381279 1648 - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1764"; repClass "LTR"; repEnd "3370"; repFamily "ERVL"; repLeft "2918"; repStart "-1856"; chr9 rmsk exon 135381644 135382106 1648 - . gene_id "ERV316A3_9q34.3b"; transcript_id "ERV316A3_9q34.3b"; locus "ERV316A3_9q34.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1764"; repClass "LTR"; repEnd "2917"; repFamily "ERVL"; repLeft "2425"; repStart "-2309"; ### HERVE_9q34.3 ### chr9 rmsk gene 135437085 135444492 . - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0097"; model_cov "6081"; model_pct "77.8"; chr9 rmsk exon 135437085 135437285 1267 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "306"; repStart "0"; chr9 rmsk exon 135437465 135437562 398 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "7714"; repStart "0"; chr9 rmsk exon 135437540 135437595 274 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "6438"; repFamily "ERV1"; repLeft "6383"; repStart "-1375"; chr9 rmsk exon 135437583 135437688 580 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "5915"; repStart "-1791"; chr9 rmsk exon 135437717 135439587 43615 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "3977"; repStart "-1991"; chr9 rmsk exon 135440177 135444140 43615 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "3976"; repFamily "ERV1"; repLeft "1"; repStart "-3837"; chr9 rmsk exon 135444141 135444321 1161 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chr9 rmsk exon 135444345 135444492 233 - . gene_id "HERVE_9q34.3"; transcript_id "HERVE_9q34.3"; locus "HERVE_9q34.3"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0097"; repClass "LTR"; repEnd "189"; repFamily "ERV1"; repLeft "39"; repStart "-312"; ### MER4B_9q34.3 ### chr9 rmsk gene 135645972 135650448 . + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0273"; model_cov "1583"; model_pct "23.4"; chr9 rmsk exon 135645972 135646417 2683 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "317"; chr9 rmsk exon 135646422 135646472 257 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "217"; repFamily "ERV1"; repLeft "-6541"; repStart "163"; chr9 rmsk exon 135646608 135647364 5147 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "21"; chr9 rmsk exon 135647365 135647751 1290 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "630"; repFamily "ERV1"; repLeft "-6128"; repStart "213"; chr9 rmsk exon 135648266 135648376 374 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "991"; repFamily "ERV1"; repLeft "-5767"; repStart "887"; chr9 rmsk exon 135648406 135648518 1271 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4390"; repStart "2266"; chr9 rmsk exon 135649158 135649564 1271 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "2675"; repFamily "ERV1"; repLeft "-4083"; repStart "2369"; chr9 rmsk exon 135649736 135650310 2225 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "3024"; repFamily "ERV1"; repLeft "-3734"; repStart "2561"; chr9 rmsk exon 135650312 135650448 540 + . gene_id "MER4B_9q34.3"; transcript_id "MER4B_9q34.3"; locus "MER4B_9q34.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0273"; repClass "LTR"; repEnd "1166"; repFamily "ERV1"; repLeft "-5592"; repStart "1029"; ### MER4_9q34.3 ### chr9 rmsk gene 135650751 135654625 . + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0477"; model_cov "1850"; model_pct "28.0"; chr9 rmsk exon 135650751 135651022 1142 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "-412"; repFamily "ERV1"; repLeft "-7010"; repStart "-676"; chr9 rmsk exon 135651022 135651165 831 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "1594"; repFamily "ERV1"; repLeft "-5004"; repStart "1451"; chr9 rmsk exon 135652210 135652488 3942 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "3025"; repFamily "ERV1"; repLeft "-3573"; repStart "2750"; chr9 rmsk exon 135653246 135653833 3942 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "3645"; repFamily "ERV1"; repLeft "-2953"; repStart "3026"; chr9 rmsk exon 135654131 135654261 3942 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "-2819"; repStart "3646"; chr9 rmsk exon 135654258 135654625 1672 + . gene_id "MER4_9q34.3"; transcript_id "MER4_9q34.3"; locus "MER4_9q34.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0477"; repClass "LTR"; repEnd "4358"; repFamily "ERV1"; repLeft "-2240"; repStart "3942"; ### PABLB_9q34.3 ### chr9 rmsk gene 135656823 135662919 . + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0062"; model_cov "4059"; model_pct "57.0"; chr9 rmsk exon 135656823 135657341 3925 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "96"; chr9 rmsk exon 135657351 135658342 16765 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "4205"; repFamily "ERV1"; repLeft "-2917"; repStart "3205"; chr9 rmsk exon 135658647 135660564 16765 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "6152"; repFamily "ERV1"; repLeft "-970"; repStart "4206"; chr9 rmsk exon 135660571 135660618 272 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "6154"; repFamily "ERV1"; repLeft "-968"; repStart "6105"; chr9 rmsk exon 135660620 135660669 323 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "6154"; repFamily "ERV1"; repLeft "-968"; repStart "6105"; chr9 rmsk exon 135660671 135660751 5289 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "6196"; repFamily "ERV1"; repLeft "-926"; repStart "6105"; chr9 rmsk exon 135661050 135661580 5289 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "6711"; repFamily "ERV1"; repLeft "-411"; repStart "6197"; chr9 rmsk exon 135661871 135662290 5289 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "0"; repStart "6712"; chr9 rmsk exon 135662291 135662919 3987 + . gene_id "PABLB_9q34.3"; transcript_id "PABLB_9q34.3"; locus "PABLB_9q34.3"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0062"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERV316A3_9q34.3c ### chr9 rmsk gene 136315240 136318401 . + . gene_id "ERV316A3_9q34.3c"; transcript_id "ERV316A3_9q34.3c"; locus "ERV316A3_9q34.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1766"; model_cov "1822"; model_pct "34.9"; chr9 rmsk exon 136315240 136315754 1101 + . gene_id "ERV316A3_9q34.3c"; transcript_id "ERV316A3_9q34.3c"; locus "ERV316A3_9q34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1766"; repClass "LTR"; repEnd "1744"; repFamily "ERVL"; repLeft "-3482"; repStart "1160"; chr9 rmsk exon 136316858 136317220 718 + . gene_id "ERV316A3_9q34.3c"; transcript_id "ERV316A3_9q34.3c"; locus "ERV316A3_9q34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1766"; repClass "LTR"; repEnd "3093"; repFamily "ERVL"; repLeft "-2133"; repStart "2726"; chr9 rmsk exon 136317581 136318401 718 + . gene_id "ERV316A3_9q34.3c"; transcript_id "ERV316A3_9q34.3c"; locus "ERV316A3_9q34.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1766"; repClass "LTR"; repEnd "3965"; repFamily "ERVL"; repLeft "-1261"; repStart "3094"; ### ERVLE_9q34.3b ### chr9 rmsk gene 136590693 136592272 . + . gene_id "ERVLE_9q34.3b"; transcript_id "ERVLE_9q34.3b"; locus "ERVLE_9q34.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2350"; model_cov "1394"; model_pct "24.6"; chr9 rmsk exon 136590693 136591804 899 + . gene_id "ERVLE_9q34.3b"; transcript_id "ERVLE_9q34.3b"; locus "ERVLE_9q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2350"; repClass "LTR"; repEnd "2824"; repFamily "ERVL"; repLeft "-2843"; repStart "1684"; chr9 rmsk exon 136592069 136592272 346 + . gene_id "ERVLE_9q34.3b"; transcript_id "ERVLE_9q34.3b"; locus "ERVLE_9q34.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2350"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2552"; repStart "2861"; ### HERVL40_9q34.3 ### chr9 rmsk gene 136703426 136709202 . + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0272"; model_cov "2017"; model_pct "36.5"; chr9 rmsk exon 136703426 136703522 254 + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0272"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-5013"; repStart "412"; chr9 rmsk exon 136705861 136706339 3741 + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0272"; repClass "LTR"; repEnd "1765"; repFamily "ERVL"; repLeft "-3765"; repStart "1274"; chr9 rmsk exon 136706959 136707635 3741 + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0272"; repClass "LTR"; repEnd "2440"; repFamily "ERVL"; repLeft "-3090"; repStart "1766"; chr9 rmsk exon 136707946 136708531 3741 + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0272"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "-2508"; repStart "2441"; chr9 rmsk exon 136709034 136709202 462 + . gene_id "HERVL40_9q34.3"; transcript_id "HERVL40_9q34.3"; locus "HERVL40_9q34.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0272"; repClass "LTR"; repEnd "4647"; repFamily "ERVL"; repLeft "-883"; repStart "4481"; ### HML2_9q34.3 ### chr9 rmsk gene 136780314 136789776 . - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0078"; model_cov "5732"; model_pct "76.1"; chr9 rmsk exon 136780314 136781296 6274 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr9 rmsk exon 136781297 136781482 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "7350"; repStart "0"; chr9 rmsk exon 136781788 136781880 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7349"; repFamily "ERVK"; repLeft "7258"; repStart "-187"; chr9 rmsk exon 136781866 136783596 11943 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "5592"; repFamily "ERVK"; repLeft "3860"; repStart "-1944"; chr9 rmsk exon 136783849 136785013 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "3710"; repFamily "ERVK"; repLeft "2565"; repStart "-3826"; chr9 rmsk exon 136786163 136787981 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "2564"; repFamily "ERVK"; repLeft "743"; repStart "-4972"; chr9 rmsk exon 136788061 136788797 4132 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr9 rmsk exon 136788798 136789776 6413 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER101_9q34.3 ### chr9 rmsk gene 136871520 136875014 . + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0250"; model_cov "1896"; model_pct "28.6"; chr9 rmsk exon 136871520 136871824 891 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "2282"; repFamily "ERV1"; repLeft "-4357"; repStart "1702"; chr9 rmsk exon 136872151 136872237 891 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "2367"; repFamily "ERV1"; repLeft "-4272"; repStart "2283"; chr9 rmsk exon 136872550 136872625 891 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "-4225"; repStart "2368"; chr9 rmsk exon 136872910 136873081 891 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4065"; repStart "2415"; chr9 rmsk exon 136873391 136873735 985 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "3618"; repFamily "ERV1"; repLeft "-3021"; repStart "2934"; chr9 rmsk exon 136873724 136873761 766 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "3684"; repFamily "ERV1"; repLeft "-2955"; repStart "3650"; chr9 rmsk exon 136874363 136874659 766 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-2704"; repStart "3685"; chr9 rmsk exon 136874946 136875014 760 + . gene_id "MER101_9q34.3"; transcript_id "MER101_9q34.3"; locus "MER101_9q34.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0250"; repClass "LTR"; repEnd "5004"; repFamily "ERV1"; repLeft "-1635"; repStart "4945"; ### HERVH_9q34.3 ### chr9 rmsk gene 137843940 137850465 . + . gene_id "HERVH_9q34.3"; transcript_id "HERVH_9q34.3"; locus "HERVH_9q34.3"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0792"; model_cov "4610"; model_pct "59.8"; chr9 rmsk exon 137843940 137845115 1809 + . gene_id "HERVH_9q34.3"; transcript_id "HERVH_9q34.3"; locus "HERVH_9q34.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0792"; repClass "LTR"; repEnd "3040"; repFamily "ERV1"; repLeft "-4673"; repStart "1977"; chr9 rmsk exon 137846428 137849606 12168 + . gene_id "HERVH_9q34.3"; transcript_id "HERVH_9q34.3"; locus "HERVH_9q34.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0792"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "-2699"; repStart "1911"; chr9 rmsk exon 137849593 137850032 2356 + . gene_id "HERVH_9q34.3"; transcript_id "HERVH_9q34.3"; locus "HERVH_9q34.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0792"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7269"; chr9 rmsk exon 137850033 137850465 3455 + . gene_id "HERVH_9q34.3"; transcript_id "HERVH_9q34.3"; locus "HERVH_9q34.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0792"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_9q34.3d ### chr9 rmsk gene 137866355 137867499 . - . gene_id "ERV316A3_9q34.3d"; transcript_id "ERV316A3_9q34.3d"; locus "ERV316A3_9q34.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1767"; model_cov "726"; model_pct "13.9"; chr9 rmsk exon 137866355 137866552 387 - . gene_id "ERV316A3_9q34.3d"; transcript_id "ERV316A3_9q34.3d"; locus "ERV316A3_9q34.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1767"; repClass "LTR"; repEnd "1695"; repFamily "ERVL"; repLeft "1493"; repStart "-3531"; chr9 rmsk exon 137866965 137867110 262 - . gene_id "ERV316A3_9q34.3d"; transcript_id "ERV316A3_9q34.3d"; locus "ERV316A3_9q34.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1767"; repClass "LTR"; repEnd "1158"; repFamily "ERVL"; repLeft "1009"; repStart "-4068"; chr9 rmsk exon 137867146 137867499 415 - . gene_id "ERV316A3_9q34.3d"; transcript_id "ERV316A3_9q34.3d"; locus "ERV316A3_9q34.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1767"; repClass "LTR"; repEnd "918"; repFamily "ERVL"; repLeft "543"; repStart "-4308"; ### HERV4_9q34.3a ### chr9 rmsk gene 137931085 137933736 . - . gene_id "HERV4_9q34.3a"; transcript_id "HERV4_9q34.3a"; locus "HERV4_9q34.3a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0085"; model_cov "1630"; model_pct "24.9"; chr9 rmsk exon 137931085 137931559 1694 - . gene_id "HERV4_9q34.3a"; transcript_id "HERV4_9q34.3a"; locus "HERV4_9q34.3a"; repName "MER51C"; geneRegion "ltr"; locid "HERV4_I-int_0085"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "1"; repStart "-11"; chr9 rmsk exon 137931560 137932167 1897 - . gene_id "HERV4_9q34.3a"; transcript_id "HERV4_9q34.3a"; locus "HERV4_9q34.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0085"; repClass "LTR"; repEnd "6202"; repFamily "ERV1"; repLeft "5081"; repStart "-337"; chr9 rmsk exon 137932252 137932610 692 - . gene_id "HERV4_9q34.3a"; transcript_id "HERV4_9q34.3a"; locus "HERV4_9q34.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0085"; repClass "LTR"; repEnd "5854"; repFamily "ERV1"; repLeft "5494"; repStart "-685"; chr9 rmsk exon 137933594 137933736 324 - . gene_id "HERV4_9q34.3a"; transcript_id "HERV4_9q34.3a"; locus "HERV4_9q34.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0085"; repClass "LTR"; repEnd "4968"; repFamily "ERV1"; repLeft "4819"; repStart "-1571"; ### HERV4_9q34.3b ### chr9 rmsk gene 137942978 137947440 . - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0087"; model_cov "3311"; model_pct "50.6"; chr9 rmsk exon 137942978 137943557 3662 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "5803"; repFamily "ERV1"; repLeft "5252"; repStart "-736"; chr9 rmsk exon 137944001 137944047 306 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "5257"; repFamily "ERV1"; repLeft "5210"; repStart "-1282"; chr9 rmsk exon 137944040 137945826 8328 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "4123"; repFamily "ERV1"; repLeft "2046"; repStart "-2416"; chr9 rmsk exon 137946120 137946263 628 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "4023"; repFamily "ERV1"; repLeft "3885"; repStart "-2516"; chr9 rmsk exon 137946344 137946877 3010 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "1"; repStart "-6040"; chr9 rmsk exon 137946879 137947440 1862 - . gene_id "HERV4_9q34.3b"; transcript_id "HERV4_9q34.3b"; locus "HERV4_9q34.3b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0087"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5"; repStart "-1"; ### PRIMA41_9q34.3 ### chr9 rmsk gene 138171763 138174909 . + . gene_id "PRIMA41_9q34.3"; transcript_id "PRIMA41_9q34.3"; locus "PRIMA41_9q34.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0085"; model_cov "1920"; model_pct "24.8"; chr9 rmsk exon 138171763 138171936 825 + . gene_id "PRIMA41_9q34.3"; transcript_id "PRIMA41_9q34.3"; locus "PRIMA41_9q34.3"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0085"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "0"; repStart "384"; chr9 rmsk exon 138172385 138172667 6159 + . gene_id "PRIMA41_9q34.3"; transcript_id "PRIMA41_9q34.3"; locus "PRIMA41_9q34.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0085"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "-3239"; repStart "4242"; chr9 rmsk exon 138173319 138174909 6159 + . gene_id "PRIMA41_9q34.3"; transcript_id "PRIMA41_9q34.3"; locus "PRIMA41_9q34.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0085"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "4518"; ### PRIMA41_10p15.3 ### chr10 rmsk gene 49371 52548 . - . gene_id "PRIMA41_10p15.3"; transcript_id "PRIMA41_10p15.3"; locus "PRIMA41_10p15.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0086"; model_cov "1920"; model_pct "24.8"; chr10 rmsk exon 49371 50968 5843 - . gene_id "PRIMA41_10p15.3"; transcript_id "PRIMA41_10p15.3"; locus "PRIMA41_10p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0086"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4518"; repStart "-1593"; chr10 rmsk exon 51595 51877 5843 - . gene_id "PRIMA41_10p15.3"; transcript_id "PRIMA41_10p15.3"; locus "PRIMA41_10p15.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0086"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "4242"; repStart "-3239"; chr10 rmsk exon 52350 52548 836 - . gene_id "PRIMA41_10p15.3"; transcript_id "PRIMA41_10p15.3"; locus "PRIMA41_10p15.3"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0086"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "360"; repStart "0"; ### HERVL_10p15.3 ### chr10 rmsk gene 98309 100387 . - . gene_id "HERVL_10p15.3"; transcript_id "HERVL_10p15.3"; locus "HERVL_10p15.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0834"; model_cov "1331"; model_pct "23.5"; chr10 rmsk exon 98309 98463 10152 - . gene_id "HERVL_10p15.3"; transcript_id "HERVL_10p15.3"; locus "HERVL_10p15.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0834"; repClass "LTR"; repEnd "1333"; repFamily "ERVL"; repLeft "1178"; repStart "-4321"; chr10 rmsk exon 98768 99951 10152 - . gene_id "HERVL_10p15.3"; transcript_id "HERVL_10p15.3"; locus "HERVL_10p15.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0834"; repClass "LTR"; repEnd "1177"; repFamily "ERVL"; repLeft "1"; repStart "-4477"; chr10 rmsk exon 99952 100387 2922 - . gene_id "HERVL_10p15.3"; transcript_id "HERVL_10p15.3"; locus "HERVL_10p15.3"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0834"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_10p15.3a ### chr10 rmsk gene 1349016 1354570 . + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0793"; model_cov "4794"; model_pct "62.2"; chr10 rmsk exon 1349016 1349420 2617 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 1349423 1349871 2884 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr10 rmsk exon 1349921 1352149 13569 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr10 rmsk exon 1352129 1352980 5723 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr10 rmsk exon 1352983 1353162 1214 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "-3046"; repStart "4488"; chr10 rmsk exon 1353159 1353972 5318 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "6624"; repFamily "ERV1"; repLeft "-1089"; repStart "5769"; chr10 rmsk exon 1353974 1354220 1422 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7453"; chr10 rmsk exon 1354221 1354570 1946 + . gene_id "HERVH_10p15.3a"; transcript_id "HERVH_10p15.3a"; locus "HERVH_10p15.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0793"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_10p15.3 ### chr10 rmsk gene 1935437 1936442 . + . gene_id "ERVLB4_10p15.3"; transcript_id "ERVLB4_10p15.3"; locus "ERVLB4_10p15.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1074"; model_cov "731"; model_pct "12.8"; chr10 rmsk exon 1935437 1935659 798 + . gene_id "ERVLB4_10p15.3"; transcript_id "ERVLB4_10p15.3"; locus "ERVLB4_10p15.3"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1074"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-231"; repStart "1"; chr10 rmsk exon 1935721 1936442 2863 + . gene_id "ERVLB4_10p15.3"; transcript_id "ERVLB4_10p15.3"; locus "ERVLB4_10p15.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1074"; repClass "LTR"; repEnd "3791"; repFamily "ERVL"; repLeft "-1923"; repStart "3060"; ### ERV316A3_10p15.3a ### chr10 rmsk gene 2127361 2128369 . - . gene_id "ERV316A3_10p15.3a"; transcript_id "ERV316A3_10p15.3a"; locus "ERV316A3_10p15.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1768"; model_cov "801"; model_pct "15.3"; chr10 rmsk exon 2127361 2127513 287 - . gene_id "ERV316A3_10p15.3a"; transcript_id "ERV316A3_10p15.3a"; locus "ERV316A3_10p15.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1768"; repClass "LTR"; repEnd "4259"; repFamily "ERVL"; repLeft "4109"; repStart "-967"; chr10 rmsk exon 2127752 2128369 634 - . gene_id "ERV316A3_10p15.3a"; transcript_id "ERV316A3_10p15.3a"; locus "ERV316A3_10p15.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1768"; repClass "LTR"; repEnd "3837"; repFamily "ERVL"; repLeft "3186"; repStart "-1389"; ### ERV316A3_10p15.3b ### chr10 rmsk gene 2333120 2334147 . - . gene_id "ERV316A3_10p15.3b"; transcript_id "ERV316A3_10p15.3b"; locus "ERV316A3_10p15.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1769"; model_cov "1024"; model_pct "19.6"; chr10 rmsk exon 2333120 2334147 746 - . gene_id "ERV316A3_10p15.3b"; transcript_id "ERV316A3_10p15.3b"; locus "ERV316A3_10p15.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1769"; repClass "LTR"; repEnd "2317"; repFamily "ERVL"; repLeft "1293"; repStart "-2909"; ### ERV316A3_10p15.3c ### chr10 rmsk gene 2699376 2700731 . + . gene_id "ERV316A3_10p15.3c"; transcript_id "ERV316A3_10p15.3c"; locus "ERV316A3_10p15.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1770"; model_cov "1283"; model_pct "24.6"; chr10 rmsk exon 2699376 2699655 433 + . gene_id "ERV316A3_10p15.3c"; transcript_id "ERV316A3_10p15.3c"; locus "ERV316A3_10p15.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1770"; repClass "LTR"; repEnd "1663"; repFamily "ERVL"; repLeft "-3563"; repStart "1388"; chr10 rmsk exon 2699673 2700731 1371 + . gene_id "ERV316A3_10p15.3c"; transcript_id "ERV316A3_10p15.3c"; locus "ERV316A3_10p15.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1770"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2291"; repStart "1927"; ### ERV316A3_10p15.3d ### chr10 rmsk gene 2866608 2867138 . - . gene_id "ERV316A3_10p15.3d"; transcript_id "ERV316A3_10p15.3d"; locus "ERV316A3_10p15.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1771"; model_cov "542"; model_pct "10.4"; chr10 rmsk exon 2866608 2867138 693 - . gene_id "ERV316A3_10p15.3d"; transcript_id "ERV316A3_10p15.3d"; locus "ERV316A3_10p15.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1771"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "4508"; repStart "-176"; ### HERVH_10p15.3b ### chr10 rmsk gene 2995554 2998180 . - . gene_id "HERVH_10p15.3b"; transcript_id "HERVH_10p15.3b"; locus "HERVH_10p15.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0794"; model_cov "2405"; model_pct "31.2"; chr10 rmsk exon 2995554 2997553 12307 - . gene_id "HERVH_10p15.3b"; transcript_id "HERVH_10p15.3b"; locus "HERVH_10p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0794"; repClass "LTR"; repEnd "2740"; repFamily "ERV1"; repLeft "793"; repStart "-4973"; chr10 rmsk exon 2997608 2998073 2734 - . gene_id "HERVH_10p15.3b"; transcript_id "HERVH_10p15.3b"; locus "HERVH_10p15.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0794"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr10 rmsk exon 2998081 2998180 874 - . gene_id "HERVH_10p15.3b"; transcript_id "HERVH_10p15.3b"; locus "HERVH_10p15.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0794"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "366"; repStart "-7"; ### ERV316A3_10p15.2 ### chr10 rmsk gene 3018193 3020902 . + . gene_id "ERV316A3_10p15.2"; transcript_id "ERV316A3_10p15.2"; locus "ERV316A3_10p15.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1772"; model_cov "678"; model_pct "13.0"; chr10 rmsk exon 3018193 3018469 303 + . gene_id "ERV316A3_10p15.2"; transcript_id "ERV316A3_10p15.2"; locus "ERV316A3_10p15.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1772"; repClass "LTR"; repEnd "276"; repFamily "ERVL"; repLeft "-4950"; repStart "-22"; chr10 rmsk exon 3019943 3020366 512 + . gene_id "ERV316A3_10p15.2"; transcript_id "ERV316A3_10p15.2"; locus "ERV316A3_10p15.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1772"; repClass "LTR"; repEnd "5020"; repFamily "ERVL"; repLeft "-206"; repStart "4640"; chr10 rmsk exon 3020658 3020902 459 + . gene_id "ERV316A3_10p15.2"; transcript_id "ERV316A3_10p15.2"; locus "ERV316A3_10p15.2"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1772"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "-2"; repStart "230"; ### ERVLE_10p15.2 ### chr10 rmsk gene 3696574 3699071 . - . gene_id "ERVLE_10p15.2"; transcript_id "ERVLE_10p15.2"; locus "ERVLE_10p15.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2353"; model_cov "2404"; model_pct "42.4"; chr10 rmsk exon 3696574 3697268 1277 - . gene_id "ERVLE_10p15.2"; transcript_id "ERVLE_10p15.2"; locus "ERVLE_10p15.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2353"; repClass "LTR"; repEnd "4576"; repFamily "ERVL"; repLeft "3830"; repStart "-1091"; chr10 rmsk exon 3697248 3697367 338 - . gene_id "ERVLE_10p15.2"; transcript_id "ERVLE_10p15.2"; locus "ERVLE_10p15.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2353"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "3769"; repStart "-1776"; chr10 rmsk exon 3697386 3697967 844 - . gene_id "ERVLE_10p15.2"; transcript_id "ERVLE_10p15.2"; locus "ERVLE_10p15.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2353"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "2941"; repStart "-2007"; chr10 rmsk exon 3698287 3699071 2141 - . gene_id "ERVLE_10p15.2"; transcript_id "ERVLE_10p15.2"; locus "ERVLE_10p15.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2353"; repClass "LTR"; repEnd "2606"; repFamily "ERVL"; repLeft "1789"; repStart "-3061"; ### ERVLE_10p15.1a ### chr10 rmsk gene 4244510 4246232 . - . gene_id "ERVLE_10p15.1a"; transcript_id "ERVLE_10p15.1a"; locus "ERVLE_10p15.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2354"; model_cov "1299"; model_pct "22.9"; chr10 rmsk exon 4244510 4245502 2027 - . gene_id "ERVLE_10p15.1a"; transcript_id "ERVLE_10p15.1a"; locus "ERVLE_10p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2354"; repClass "LTR"; repEnd "1248"; repFamily "ERVL"; repLeft "110"; repStart "-4419"; chr10 rmsk exon 4245651 4245738 463 - . gene_id "ERVLE_10p15.1a"; transcript_id "ERVLE_10p15.1a"; locus "ERVLE_10p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2354"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "7"; repStart "-5572"; chr10 rmsk exon 4245778 4245842 463 - . gene_id "ERVLE_10p15.1a"; transcript_id "ERVLE_10p15.1a"; locus "ERVLE_10p15.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2354"; repClass "LTR"; repEnd "27"; repFamily "ERVL"; repLeft "-46"; repStart "-5640"; chr10 rmsk exon 4245884 4246232 1133 - . gene_id "ERVLE_10p15.1a"; transcript_id "ERVLE_10p15.1a"; locus "ERVLE_10p15.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2354"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "231"; repStart "-58"; ### ERVL_10p15.1 ### chr10 rmsk gene 4486828 4488791 . + . gene_id "ERVL_10p15.1"; transcript_id "ERVL_10p15.1"; locus "ERVL_10p15.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0278"; model_cov "1669"; model_pct "29.0"; chr10 rmsk exon 4486828 4488265 1492 + . gene_id "ERVL_10p15.1"; transcript_id "ERVL_10p15.1"; locus "ERVL_10p15.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0278"; repClass "LTR"; repEnd "3034"; repFamily "ERVL"; repLeft "-2723"; repStart "1561"; chr10 rmsk exon 4488561 4488791 846 + . gene_id "ERVL_10p15.1"; transcript_id "ERVL_10p15.1"; locus "ERVL_10p15.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0278"; repClass "LTR"; repEnd "3611"; repFamily "ERVL"; repLeft "-2146"; repStart "3415"; ### ERVLE_10p15.1b ### chr10 rmsk gene 4521869 4525470 . + . gene_id "ERVLE_10p15.1b"; transcript_id "ERVLE_10p15.1b"; locus "ERVLE_10p15.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2355"; model_cov "3302"; model_pct "58.3"; chr10 rmsk exon 4521869 4522046 286 + . gene_id "ERVLE_10p15.1b"; transcript_id "ERVLE_10p15.1b"; locus "ERVLE_10p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2355"; repClass "LTR"; repEnd "1105"; repFamily "ERVL"; repLeft "-4562"; repStart "915"; chr10 rmsk exon 4522410 4522746 571 + . gene_id "ERVLE_10p15.1b"; transcript_id "ERVLE_10p15.1b"; locus "ERVLE_10p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2355"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3642"; repStart "1691"; chr10 rmsk exon 4522772 4524975 2417 + . gene_id "ERVLE_10p15.1b"; transcript_id "ERVLE_10p15.1b"; locus "ERVLE_10p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2355"; repClass "LTR"; repEnd "4382"; repFamily "ERVL"; repLeft "-1285"; repStart "2088"; chr10 rmsk exon 4524995 4525470 814 + . gene_id "ERVLE_10p15.1b"; transcript_id "ERVLE_10p15.1b"; locus "ERVLE_10p15.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2355"; repClass "LTR"; repEnd "4910"; repFamily "ERVL"; repLeft "-757"; repStart "4426"; ### ERV316A3_10p15.1a ### chr10 rmsk gene 4590597 4591115 . + . gene_id "ERV316A3_10p15.1a"; transcript_id "ERV316A3_10p15.1a"; locus "ERV316A3_10p15.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1774"; model_cov "520"; model_pct "10.0"; chr10 rmsk exon 4590597 4591115 781 + . gene_id "ERV316A3_10p15.1a"; transcript_id "ERV316A3_10p15.1a"; locus "ERV316A3_10p15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1774"; repClass "LTR"; repEnd "1370"; repFamily "ERVL"; repLeft "-3856"; repStart "850"; ### ERVLE_10p15.1c ### chr10 rmsk gene 4692733 4695068 . - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2356"; model_cov "1100"; model_pct "19.4"; chr10 rmsk exon 4692733 4693093 1807 - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2356"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "5298"; repStart "-3"; chr10 rmsk exon 4693377 4693728 1807 - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2356"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4955"; repStart "-370"; chr10 rmsk exon 4693796 4693860 338 - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2356"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "4867"; repStart "-735"; chr10 rmsk exon 4694308 4694551 932 - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2356"; repClass "LTR"; repEnd "4784"; repFamily "ERVL"; repLeft "4538"; repStart "-883"; chr10 rmsk exon 4694986 4695068 417 - . gene_id "ERVLE_10p15.1c"; transcript_id "ERVLE_10p15.1c"; locus "ERVLE_10p15.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2356"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "4455"; repStart "-1131"; ### MER41_10p15.1 ### chr10 rmsk gene 4853677 4856881 . + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0336"; model_cov "3251"; model_pct "54.7"; chr10 rmsk exon 4853677 4854085 3666 + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0336"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-112"; repStart "1"; chr10 rmsk exon 4854392 4854512 3666 + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0336"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-1"; repStart "443"; chr10 rmsk exon 4854513 4854592 283 + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0336"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "-5846"; repStart "1"; chr10 rmsk exon 4854608 4855181 3679 + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0336"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "-5338"; repStart "1"; chr10 rmsk exon 4855191 4856881 6453 + . gene_id "MER41_10p15.1"; transcript_id "MER41_10p15.1"; locus "MER41_10p15.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0336"; repClass "LTR"; repEnd "2092"; repFamily "ERV1"; repLeft "-3854"; repStart "-453"; ### LTR57_10p15.1 ### chr10 rmsk gene 4893756 4894710 . - . gene_id "LTR57_10p15.1"; transcript_id "LTR57_10p15.1"; locus "LTR57_10p15.1"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0110"; model_cov "580"; model_pct "10.9"; chr10 rmsk exon 4893756 4894329 3133 - . gene_id "LTR57_10p15.1"; transcript_id "LTR57_10p15.1"; locus "LTR57_10p15.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0110"; repClass "LTR"; repEnd "581"; repFamily "ERVL"; repLeft "1"; repStart "-4762"; chr10 rmsk exon 4894334 4894710 2381 - . gene_id "LTR57_10p15.1"; transcript_id "LTR57_10p15.1"; locus "LTR57_10p15.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0110"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "5"; repStart "-27"; ### MER61_10p15.1 ### chr10 rmsk gene 4909131 4911590 . + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0244"; model_cov "1112"; model_pct "21.3"; chr10 rmsk exon 4909131 4909574 2691 + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0244"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 4909592 4909705 574 + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0244"; repClass "LTR"; repEnd "129"; repFamily "ERV1"; repLeft "-5088"; repStart "19"; chr10 rmsk exon 4909845 4910453 3046 + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0244"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "236"; chr10 rmsk exon 4910454 4911169 2449 + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0244"; repClass "LTR"; repEnd "1356"; repFamily "ERV1"; repLeft "-3861"; repStart "958"; chr10 rmsk exon 4911170 4911590 2641 + . gene_id "MER61_10p15.1"; transcript_id "MER61_10p15.1"; locus "MER61_10p15.1"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0244"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFRD_10p15.1a ### chr10 rmsk gene 4928655 4930599 . + . gene_id "HERVFRD_10p15.1a"; transcript_id "HERVFRD_10p15.1a"; locus "HERVFRD_10p15.1a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0115"; model_cov "1763"; model_pct "24.5"; chr10 rmsk exon 4928655 4930109 7442 + . gene_id "HERVFRD_10p15.1a"; transcript_id "HERVFRD_10p15.1a"; locus "HERVFRD_10p15.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0115"; repClass "LTR"; repEnd "6027"; repFamily "ERV1"; repLeft "-1178"; repStart "4577"; chr10 rmsk exon 4930109 4930419 1800 + . gene_id "HERVFRD_10p15.1a"; transcript_id "HERVFRD_10p15.1a"; locus "HERVFRD_10p15.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0115"; repClass "LTR"; repEnd "7195"; repFamily "ERV1"; repLeft "-10"; repStart "6882"; chr10 rmsk exon 4930420 4930599 871 + . gene_id "HERVFRD_10p15.1a"; transcript_id "HERVFRD_10p15.1a"; locus "HERVFRD_10p15.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0115"; repClass "LTR"; repEnd "192"; repFamily "ERV1"; repLeft "-542"; repStart "1"; ### PABLB_10p15.1a ### chr10 rmsk gene 4948126 4952119 . + . gene_id "PABLB_10p15.1a"; transcript_id "PABLB_10p15.1a"; locus "PABLB_10p15.1a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0063"; model_cov "4052"; model_pct "56.9"; chr10 rmsk exon 4948126 4952119 16558 + . gene_id "PABLB_10p15.1a"; transcript_id "PABLB_10p15.1a"; locus "PABLB_10p15.1a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0063"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "-2438"; repStart "632"; ### PABLB_10p15.1b ### chr10 rmsk gene 5014293 5015225 . - . gene_id "PABLB_10p15.1b"; transcript_id "PABLB_10p15.1b"; locus "PABLB_10p15.1b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0064"; model_cov "945"; model_pct "13.3"; chr10 rmsk exon 5014293 5015225 3936 - . gene_id "PABLB_10p15.1b"; transcript_id "PABLB_10p15.1b"; locus "PABLB_10p15.1b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0064"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "3739"; repStart "-2438"; ### HERVFRD_10p15.1b ### chr10 rmsk gene 5026904 5028848 . - . gene_id "HERVFRD_10p15.1b"; transcript_id "HERVFRD_10p15.1b"; locus "HERVFRD_10p15.1b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0116"; model_cov "1749"; model_pct "24.3"; chr10 rmsk exon 5026904 5027097 1078 - . gene_id "HERVFRD_10p15.1b"; transcript_id "HERVFRD_10p15.1b"; locus "HERVFRD_10p15.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0116"; repClass "LTR"; repEnd "201"; repFamily "ERV1"; repLeft "1"; repStart "-533"; chr10 rmsk exon 5027099 5027395 1850 - . gene_id "HERVFRD_10p15.1b"; transcript_id "HERVFRD_10p15.1b"; locus "HERVFRD_10p15.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0116"; repClass "LTR"; repEnd "7181"; repFamily "ERV1"; repLeft "6882"; repStart "-24"; chr10 rmsk exon 5027395 5028848 7958 - . gene_id "HERVFRD_10p15.1b"; transcript_id "HERVFRD_10p15.1b"; locus "HERVFRD_10p15.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0116"; repClass "LTR"; repEnd "6027"; repFamily "ERV1"; repLeft "4577"; repStart "-1178"; ### HML1_10p15.1 ### chr10 rmsk gene 5035130 5038306 . + . gene_id "HML1_10p15.1"; transcript_id "HML1_10p15.1"; locus "HML1_10p15.1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0068"; model_cov "2860"; model_pct "46.9"; chr10 rmsk exon 5035130 5035473 2747 + . gene_id "HML1_10p15.1"; transcript_id "HML1_10p15.1"; locus "HML1_10p15.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0068"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr10 rmsk exon 5035474 5038306 22865 + . gene_id "HML1_10p15.1"; transcript_id "HML1_10p15.1"; locus "HML1_10p15.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0068"; repClass "LTR"; repEnd "2861"; repFamily "ERVK"; repLeft "-3235"; repStart "1"; ### HML4_10p15.1 ### chr10 rmsk gene 5038312 5047640 . - . gene_id "HML4_10p15.1"; transcript_id "HML4_10p15.1"; locus "HML4_10p15.1"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0013"; model_cov "8115"; model_pct "100.0"; chr10 rmsk exon 5038312 5038562 1994 - . gene_id "HML4_10p15.1"; transcript_id "HML4_10p15.1"; locus "HML4_10p15.1"; repName "LTR13A"; geneRegion "ltr"; locid "HERVK13-int_0013"; repClass "LTR"; repEnd "256"; repFamily "ERVK"; repLeft "1"; repStart "-710"; chr10 rmsk exon 5038563 5046687 74907 - . gene_id "HML4_10p15.1"; transcript_id "HML4_10p15.1"; locus "HML4_10p15.1"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0013"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 5046688 5047640 7597 - . gene_id "HML4_10p15.1"; transcript_id "HML4_10p15.1"; locus "HML4_10p15.1"; repName "LTR13A"; geneRegion "ltr"; locid "HERVK13-int_0013"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_10p15.1 ### chr10 rmsk gene 5115137 5116836 . - . gene_id "HERVL_10p15.1"; transcript_id "HERVL_10p15.1"; locus "HERVL_10p15.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0835"; model_cov "1286"; model_pct "22.7"; chr10 rmsk exon 5115137 5115588 3124 - . gene_id "HERVL_10p15.1"; transcript_id "HERVL_10p15.1"; locus "HERVL_10p15.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0835"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 5115589 5116572 7032 - . gene_id "HERVL_10p15.1"; transcript_id "HERVL_10p15.1"; locus "HERVL_10p15.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0835"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4635"; repStart "0"; chr10 rmsk exon 5116566 5116836 2023 - . gene_id "HERVL_10p15.1"; transcript_id "HERVL_10p15.1"; locus "HERVL_10p15.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0835"; repClass "LTR"; repEnd "3912"; repFamily "ERVL"; repLeft "3645"; repStart "-1742"; ### ERVLB4_10p15.1 ### chr10 rmsk gene 5143017 5146658 . + . gene_id "ERVLB4_10p15.1"; transcript_id "ERVLB4_10p15.1"; locus "ERVLB4_10p15.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1077"; model_cov "589"; model_pct "10.3"; chr10 rmsk exon 5143017 5143582 1228 + . gene_id "ERVLB4_10p15.1"; transcript_id "ERVLB4_10p15.1"; locus "ERVLB4_10p15.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1077"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "-50"; repStart "1"; chr10 rmsk exon 5143797 5144067 929 + . gene_id "ERVLB4_10p15.1"; transcript_id "ERVLB4_10p15.1"; locus "ERVLB4_10p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1077"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-5436"; repStart "1"; chr10 rmsk exon 5146373 5146518 379 + . gene_id "ERVLB4_10p15.1"; transcript_id "ERVLB4_10p15.1"; locus "ERVLB4_10p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1077"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "-5299"; repStart "260"; chr10 rmsk exon 5146506 5146658 354 + . gene_id "ERVLB4_10p15.1"; transcript_id "ERVLB4_10p15.1"; locus "ERVLB4_10p15.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1077"; repClass "LTR"; repEnd "279"; repFamily "ERVL"; repLeft "-5435"; repStart "122"; ### LTR25_10p15.1a ### chr10 rmsk gene 5163884 5169104 . + . gene_id "LTR25_10p15.1a"; transcript_id "LTR25_10p15.1a"; locus "LTR25_10p15.1a"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0079"; model_cov "2808"; model_pct "39.1"; chr10 rmsk exon 5163884 5164475 2652 + . gene_id "LTR25_10p15.1a"; transcript_id "LTR25_10p15.1a"; locus "LTR25_10p15.1a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0079"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "228"; chr10 rmsk exon 5164479 5166195 8809 + . gene_id "LTR25_10p15.1a"; transcript_id "LTR25_10p15.1a"; locus "LTR25_10p15.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0079"; repClass "LTR"; repEnd "1769"; repFamily "ERV1"; repLeft "-5419"; repStart "3"; chr10 rmsk exon 5168025 5169104 4772 + . gene_id "LTR25_10p15.1a"; transcript_id "LTR25_10p15.1a"; locus "LTR25_10p15.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0079"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "-4382"; repStart "1764"; ### LTR19_10p15.1 ### chr10 rmsk gene 5169111 5173521 . - . gene_id "LTR19_10p15.1"; transcript_id "LTR19_10p15.1"; locus "LTR19_10p15.1"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0029"; model_cov "4067"; model_pct "72.8"; chr10 rmsk exon 5169111 5169275 1255 - . gene_id "LTR19_10p15.1"; transcript_id "LTR19_10p15.1"; locus "LTR19_10p15.1"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0029"; repClass "LTR"; repEnd "167"; repFamily "ERV1"; repLeft "3"; repStart "-413"; chr10 rmsk exon 5169492 5173286 26959 - . gene_id "LTR19_10p15.1"; transcript_id "LTR19_10p15.1"; locus "LTR19_10p15.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0029"; repClass "LTR"; repEnd "5249"; repFamily "ERV1"; repLeft "1436"; repStart "-337"; chr10 rmsk exon 5173284 5173521 1389 - . gene_id "LTR19_10p15.1"; transcript_id "LTR19_10p15.1"; locus "LTR19_10p15.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0029"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "1030"; repStart "-4302"; ### LTR25_10p15.1b ### chr10 rmsk gene 5173612 5174968 . + . gene_id "LTR25_10p15.1b"; transcript_id "LTR25_10p15.1b"; locus "LTR25_10p15.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0080"; model_cov "1267"; model_pct "17.6"; chr10 rmsk exon 5173612 5174968 5634 + . gene_id "LTR25_10p15.1b"; transcript_id "LTR25_10p15.1b"; locus "LTR25_10p15.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0080"; repClass "LTR"; repEnd "4952"; repFamily "ERV1"; repLeft "-2236"; repStart "3685"; ### LTR25_10p15.1c ### chr10 rmsk gene 5181140 5184422 . + . gene_id "LTR25_10p15.1c"; transcript_id "LTR25_10p15.1c"; locus "LTR25_10p15.1c"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0081"; model_cov "2240"; model_pct "31.2"; chr10 rmsk exon 5181140 5182627 11582 + . gene_id "LTR25_10p15.1c"; transcript_id "LTR25_10p15.1c"; locus "LTR25_10p15.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0081"; repClass "LTR"; repEnd "6430"; repFamily "ERV1"; repLeft "-758"; repStart "4942"; chr10 rmsk exon 5182923 5183683 11582 + . gene_id "LTR25_10p15.1c"; transcript_id "LTR25_10p15.1c"; locus "LTR25_10p15.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0081"; repClass "LTR"; repEnd "7183"; repFamily "ERV1"; repLeft "-5"; repStart "6431"; chr10 rmsk exon 5183741 5184422 2400 + . gene_id "LTR25_10p15.1c"; transcript_id "LTR25_10p15.1c"; locus "LTR25_10p15.1c"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0081"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "93"; ### MER4_10p15.1 ### chr10 rmsk gene 5263582 5265822 . - . gene_id "MER4_10p15.1"; transcript_id "MER4_10p15.1"; locus "MER4_10p15.1"; category "internal"; intModel "MER4-int"; locid "MER4-int_0482"; model_cov "2302"; model_pct "34.9"; chr10 rmsk exon 5263582 5265822 14530 - . gene_id "MER4_10p15.1"; transcript_id "MER4_10p15.1"; locus "MER4_10p15.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0482"; repClass "LTR"; repEnd "6139"; repFamily "ERV1"; repLeft "3837"; repStart "-459"; ### ERVLE_10p15.1d ### chr10 rmsk gene 5438991 5440667 . - . gene_id "ERVLE_10p15.1d"; transcript_id "ERVLE_10p15.1d"; locus "ERVLE_10p15.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2359"; model_cov "1658"; model_pct "29.3"; chr10 rmsk exon 5438991 5440667 2234 - . gene_id "ERVLE_10p15.1d"; transcript_id "ERVLE_10p15.1d"; locus "ERVLE_10p15.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2359"; repClass "LTR"; repEnd "4238"; repFamily "ERVL"; repLeft "2580"; repStart "-1429"; ### HERVH_10p15.1 ### chr10 rmsk gene 5470768 5477012 . + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0795"; model_cov "5261"; model_pct "68.2"; chr10 rmsk exon 5470768 5471177 2808 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 5471180 5472793 25266 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "1613"; repFamily "ERV1"; repLeft "-6100"; repStart "1"; chr10 rmsk exon 5473093 5475360 25266 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "1614"; chr10 rmsk exon 5475363 5476022 4256 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr10 rmsk exon 5476024 5476241 1359 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr10 rmsk exon 5476240 5476604 2087 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 5476605 5477012 2772 + . gene_id "HERVH_10p15.1"; transcript_id "HERVH_10p15.1"; locus "HERVH_10p15.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0795"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_10p15.1e ### chr10 rmsk gene 5669708 5672616 . + . gene_id "ERVLE_10p15.1e"; transcript_id "ERVLE_10p15.1e"; locus "ERVLE_10p15.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2360"; model_cov "2632"; model_pct "46.4"; chr10 rmsk exon 5669708 5671532 4718 + . gene_id "ERVLE_10p15.1e"; transcript_id "ERVLE_10p15.1e"; locus "ERVLE_10p15.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2360"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "-3411"; repStart "311"; chr10 rmsk exon 5671822 5672471 4718 + . gene_id "ERVLE_10p15.1e"; transcript_id "ERVLE_10p15.1e"; locus "ERVLE_10p15.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2360"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "-2723"; repStart "2257"; chr10 rmsk exon 5672529 5672616 261 + . gene_id "ERVLE_10p15.1e"; transcript_id "ERVLE_10p15.1e"; locus "ERVLE_10p15.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2360"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "-284"; repStart "286"; ### ERV316A3_10p15.1b ### chr10 rmsk gene 5676816 5677831 . - . gene_id "ERV316A3_10p15.1b"; transcript_id "ERV316A3_10p15.1b"; locus "ERV316A3_10p15.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1775"; model_cov "587"; model_pct "11.2"; chr10 rmsk exon 5676816 5677258 1492 - . gene_id "ERV316A3_10p15.1b"; transcript_id "ERV316A3_10p15.1b"; locus "ERV316A3_10p15.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1775"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 5677259 5677831 1643 - . gene_id "ERV316A3_10p15.1b"; transcript_id "ERV316A3_10p15.1b"; locus "ERV316A3_10p15.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1775"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4639"; repStart "0"; ### ERV316A3_10p15.1c ### chr10 rmsk gene 6077139 6079309 . - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1776"; model_cov "1336"; model_pct "25.6"; chr10 rmsk exon 6077139 6077469 512 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "7"; repStart "-76"; chr10 rmsk exon 6077477 6077821 714 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4867"; repStart "-1"; chr10 rmsk exon 6077852 6078112 1075 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "4728"; repFamily "ERVL"; repLeft "4476"; repStart "-498"; chr10 rmsk exon 6078337 6078498 1075 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4336"; repStart "-751"; chr10 rmsk exon 6078493 6078783 1588 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "3994"; repFamily "ERVL"; repLeft "3684"; repStart "-1232"; chr10 rmsk exon 6079034 6079309 1588 - . gene_id "ERV316A3_10p15.1c"; transcript_id "ERV316A3_10p15.1c"; locus "ERV316A3_10p15.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1776"; repClass "LTR"; repEnd "3683"; repFamily "ERVL"; repLeft "3406"; repStart "-1543"; ### ERV316A3_10p15.1d ### chr10 rmsk gene 6080817 6081641 . + . gene_id "ERV316A3_10p15.1d"; transcript_id "ERV316A3_10p15.1d"; locus "ERV316A3_10p15.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1777"; model_cov "544"; model_pct "10.4"; chr10 rmsk exon 6080817 6081014 1144 + . gene_id "ERV316A3_10p15.1d"; transcript_id "ERV316A3_10p15.1d"; locus "ERV316A3_10p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1777"; repClass "LTR"; repEnd "2386"; repFamily "ERVL"; repLeft "-2840"; repStart "2165"; chr10 rmsk exon 6081322 6081474 1144 + . gene_id "ERV316A3_10p15.1d"; transcript_id "ERV316A3_10p15.1d"; locus "ERV316A3_10p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1777"; repClass "LTR"; repEnd "2544"; repFamily "ERVL"; repLeft "-2682"; repStart "2387"; chr10 rmsk exon 6081478 6081641 396 + . gene_id "ERV316A3_10p15.1d"; transcript_id "ERV316A3_10p15.1d"; locus "ERV316A3_10p15.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1777"; repClass "LTR"; repEnd "3130"; repFamily "ERVL"; repLeft "-2096"; repStart "2964"; ### HERVH_10p14a ### chr10 rmsk gene 6629579 6635541 . - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0796"; model_cov "4916"; model_pct "63.7"; chr10 rmsk exon 6629579 6630029 3782 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 6630030 6630409 2566 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 6630408 6630623 1471 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr10 rmsk exon 6630625 6631286 4415 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 6631289 6631791 3289 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr10 rmsk exon 6631782 6631931 945 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 6631911 6635090 17283 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr10 rmsk exon 6635093 6635541 3573 - . gene_id "HERVH_10p14a"; transcript_id "HERVH_10p14a"; locus "HERVH_10p14a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0796"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_10p14b ### chr10 rmsk gene 6797083 6802953 . - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0797"; model_cov "4908"; model_pct "63.6"; chr10 rmsk exon 6797083 6797533 3581 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 6797534 6797912 2553 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 6797911 6798126 1398 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr10 rmsk exon 6798128 6798784 4338 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 6798787 6799282 3346 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr10 rmsk exon 6799282 6799431 929 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 6799411 6802500 20122 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr10 rmsk exon 6802503 6802953 3539 - . gene_id "HERVH_10p14b"; transcript_id "HERVH_10p14b"; locus "HERVH_10p14b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0797"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML2_10p14 ### chr10 rmsk gene 6824179 6833641 . - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0079"; model_cov "7440"; model_pct "98.7"; chr10 rmsk exon 6824179 6825146 7814 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 6825242 6832673 63906 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr10 rmsk exon 6832674 6833641 7901 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_10p14a ### chr10 rmsk gene 7469101 7470236 . + . gene_id "ERVLE_10p14a"; transcript_id "ERVLE_10p14a"; locus "ERVLE_10p14a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2362"; model_cov "1141"; model_pct "20.1"; chr10 rmsk exon 7469101 7470236 2455 + . gene_id "ERVLE_10p14a"; transcript_id "ERVLE_10p14a"; locus "ERVLE_10p14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2362"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "-2331"; repStart "2195"; ### ERV316A3_10p14a ### chr10 rmsk gene 7813000 7816802 . + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1778"; model_cov "2355"; model_pct "45.1"; chr10 rmsk exon 7813000 7813315 1227 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-97"; repStart "4"; chr10 rmsk exon 7813406 7813540 315 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "313"; chr10 rmsk exon 7813542 7813784 658 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "-4754"; repStart "232"; chr10 rmsk exon 7813781 7814511 1378 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "-3145"; repStart "1359"; chr10 rmsk exon 7814538 7814884 1188 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "-2726"; repStart "2155"; chr10 rmsk exon 7815092 7815408 2137 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "4485"; repFamily "ERVL"; repLeft "-741"; repStart "4141"; chr10 rmsk exon 7815733 7816400 2137 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-36"; repStart "4486"; chr10 rmsk exon 7816424 7816802 777 + . gene_id "ERV316A3_10p14a"; transcript_id "ERV316A3_10p14a"; locus "ERV316A3_10p14a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1778"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_10p14b ### chr10 rmsk gene 9314231 9316202 . - . gene_id "ERVLE_10p14b"; transcript_id "ERVLE_10p14b"; locus "ERVLE_10p14b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2363"; model_cov "1102"; model_pct "19.4"; chr10 rmsk exon 9314231 9314484 776 - . gene_id "ERVLE_10p14b"; transcript_id "ERVLE_10p14b"; locus "ERVLE_10p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2363"; repClass "LTR"; repEnd "3038"; repFamily "ERVL"; repLeft "2774"; repStart "-2629"; chr10 rmsk exon 9314791 9314958 334 - . gene_id "ERVLE_10p14b"; transcript_id "ERVLE_10p14b"; locus "ERVLE_10p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2363"; repClass "LTR"; repEnd "2473"; repFamily "ERVL"; repLeft "2309"; repStart "-3194"; chr10 rmsk exon 9315351 9315459 262 - . gene_id "ERVLE_10p14b"; transcript_id "ERVLE_10p14b"; locus "ERVLE_10p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2363"; repClass "LTR"; repEnd "2209"; repFamily "ERVL"; repLeft "2108"; repStart "-3458"; chr10 rmsk exon 9315653 9316202 675 - . gene_id "ERVLE_10p14b"; transcript_id "ERVLE_10p14b"; locus "ERVLE_10p14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2363"; repClass "LTR"; repEnd "1878"; repFamily "ERVL"; repLeft "1305"; repStart "-3789"; ### ERVLE_10p14c ### chr10 rmsk gene 9376793 9378935 . - . gene_id "ERVLE_10p14c"; transcript_id "ERVLE_10p14c"; locus "ERVLE_10p14c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2364"; model_cov "1595"; model_pct "28.1"; chr10 rmsk exon 9376793 9376911 278 - . gene_id "ERVLE_10p14c"; transcript_id "ERVLE_10p14c"; locus "ERVLE_10p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2364"; repClass "LTR"; repEnd "3411"; repFamily "ERVL"; repLeft "3270"; repStart "-2256"; chr10 rmsk exon 9376932 9377626 1127 - . gene_id "ERVLE_10p14c"; transcript_id "ERVLE_10p14c"; locus "ERVLE_10p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2364"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "1953"; repStart "-2980"; chr10 rmsk exon 9378241 9378935 756 - . gene_id "ERVLE_10p14c"; transcript_id "ERVLE_10p14c"; locus "ERVLE_10p14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2364"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "860"; repStart "-4087"; ### HERVL_10p14 ### chr10 rmsk gene 9409359 9411315 . + . gene_id "HERVL_10p14"; transcript_id "HERVL_10p14"; locus "HERVL_10p14"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0836"; model_cov "1534"; model_pct "27.1"; chr10 rmsk exon 9409359 9410921 11704 + . gene_id "HERVL_10p14"; transcript_id "HERVL_10p14"; locus "HERVL_10p14"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0836"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4120"; chr10 rmsk exon 9410922 9411315 2917 + . gene_id "HERVL_10p14"; transcript_id "HERVL_10p14"; locus "HERVL_10p14"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0836"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### ERVLE_10p14d ### chr10 rmsk gene 9694501 9697061 . - . gene_id "ERVLE_10p14d"; transcript_id "ERVLE_10p14d"; locus "ERVLE_10p14d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2365"; model_cov "1965"; model_pct "34.7"; chr10 rmsk exon 9694501 9695464 1823 - . gene_id "ERVLE_10p14d"; transcript_id "ERVLE_10p14d"; locus "ERVLE_10p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2365"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "4280"; repStart "-404"; chr10 rmsk exon 9695451 9695703 865 - . gene_id "ERVLE_10p14d"; transcript_id "ERVLE_10p14d"; locus "ERVLE_10p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2365"; repClass "LTR"; repEnd "3953"; repFamily "ERVL"; repLeft "3684"; repStart "-1714"; chr10 rmsk exon 9695734 9696038 972 - . gene_id "ERVLE_10p14d"; transcript_id "ERVLE_10p14d"; locus "ERVLE_10p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2365"; repClass "LTR"; repEnd "3590"; repFamily "ERVL"; repLeft "3288"; repStart "-2077"; chr10 rmsk exon 9696623 9697061 300 - . gene_id "ERVLE_10p14d"; transcript_id "ERVLE_10p14d"; locus "ERVLE_10p14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2365"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "1204"; repStart "-4052"; ### ERV316A3_10p14b ### chr10 rmsk gene 9755060 9759571 . - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1781"; model_cov "3312"; model_pct "63.4"; chr10 rmsk exon 9755060 9756832 3912 - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1781"; repClass "LTR"; repEnd "4356"; repFamily "ERVL"; repLeft "2581"; repStart "-870"; chr10 rmsk exon 9757377 9757812 3912 - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1781"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "2172"; repStart "-2646"; chr10 rmsk exon 9758127 9758358 3912 - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1781"; repClass "LTR"; repEnd "2171"; repFamily "ERVL"; repLeft "1933"; repStart "-3055"; chr10 rmsk exon 9758378 9758991 1691 - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1781"; repClass "LTR"; repEnd "1363"; repFamily "ERVL"; repLeft "725"; repStart "-3863"; chr10 rmsk exon 9759362 9759571 1691 - . gene_id "ERV316A3_10p14b"; transcript_id "ERV316A3_10p14b"; locus "ERV316A3_10p14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1781"; repClass "LTR"; repEnd "724"; repFamily "ERVL"; repLeft "471"; repStart "-4502"; ### ERV316A3_10p14c ### chr10 rmsk gene 9807928 9809808 . - . gene_id "ERV316A3_10p14c"; transcript_id "ERV316A3_10p14c"; locus "ERV316A3_10p14c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1783"; model_cov "1726"; model_pct "33.0"; chr10 rmsk exon 9807928 9808913 884 - . gene_id "ERV316A3_10p14c"; transcript_id "ERV316A3_10p14c"; locus "ERV316A3_10p14c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1783"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "3894"; repStart "-312"; chr10 rmsk exon 9809043 9809396 402 - . gene_id "ERV316A3_10p14c"; transcript_id "ERV316A3_10p14c"; locus "ERV316A3_10p14c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1783"; repClass "LTR"; repEnd "3101"; repFamily "ERVL"; repLeft "2723"; repStart "-2125"; chr10 rmsk exon 9809482 9809808 502 - . gene_id "ERV316A3_10p14c"; transcript_id "ERV316A3_10p14c"; locus "ERV316A3_10p14c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1783"; repClass "LTR"; repEnd "2497"; repFamily "ERVL"; repLeft "2169"; repStart "-2729"; ### ERVLE_10p14e ### chr10 rmsk gene 9812618 9814609 . - . gene_id "ERVLE_10p14e"; transcript_id "ERVLE_10p14e"; locus "ERVLE_10p14e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2366"; model_cov "1305"; model_pct "23.0"; chr10 rmsk exon 9812618 9812950 775 - . gene_id "ERVLE_10p14e"; transcript_id "ERVLE_10p14e"; locus "ERVLE_10p14e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2366"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "175"; repStart "-158"; chr10 rmsk exon 9813114 9813598 2699 - . gene_id "ERVLE_10p14e"; transcript_id "ERVLE_10p14e"; locus "ERVLE_10p14e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2366"; repClass "LTR"; repEnd "5657"; repFamily "ERVL"; repLeft "5134"; repStart "-10"; chr10 rmsk exon 9813893 9814609 2699 - . gene_id "ERVLE_10p14e"; transcript_id "ERVLE_10p14e"; locus "ERVLE_10p14e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2366"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "4351"; repStart "-534"; ### ERVLE_10p14f ### chr10 rmsk gene 10118351 10122792 . + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2367"; model_cov "2782"; model_pct "49.1"; chr10 rmsk exon 10118351 10118514 250 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "-454"; repStart "1"; chr10 rmsk exon 10119196 10119687 1921 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "-5175"; repStart "5"; chr10 rmsk exon 10119836 10120555 1811 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "1478"; repFamily "ERVL"; repLeft "-4189"; repStart "738"; chr10 rmsk exon 10120966 10121061 328 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "1675"; repFamily "ERVL"; repLeft "-3992"; repStart "1580"; chr10 rmsk exon 10121354 10121822 882 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "2236"; repFamily "ERVL"; repLeft "-3431"; repStart "1700"; chr10 rmsk exon 10121913 10122792 2855 + . gene_id "ERVLE_10p14f"; transcript_id "ERVLE_10p14f"; locus "ERVLE_10p14f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2367"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "-2234"; repStart "2509"; ### ERV316A3_10p14d ### chr10 rmsk gene 10122943 10125618 . - . gene_id "ERV316A3_10p14d"; transcript_id "ERV316A3_10p14d"; locus "ERV316A3_10p14d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1784"; model_cov "1228"; model_pct "23.5"; chr10 rmsk exon 10122943 10123387 1075 - . gene_id "ERV316A3_10p14d"; transcript_id "ERV316A3_10p14d"; locus "ERV316A3_10p14d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1784"; repClass "LTR"; repEnd "2594"; repFamily "ERVL"; repLeft "2168"; repStart "-2632"; chr10 rmsk exon 10124169 10124822 1381 - . gene_id "ERV316A3_10p14d"; transcript_id "ERV316A3_10p14d"; locus "ERV316A3_10p14d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1784"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "136"; repStart "-4416"; chr10 rmsk exon 10125146 10125267 1381 - . gene_id "ERV316A3_10p14d"; transcript_id "ERV316A3_10p14d"; locus "ERV316A3_10p14d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1784"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "7"; repStart "-5091"; chr10 rmsk exon 10125270 10125618 889 - . gene_id "ERV316A3_10p14d"; transcript_id "ERV316A3_10p14d"; locus "ERV316A3_10p14d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1784"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "97"; repStart "0"; ### ERVLE_10p14g ### chr10 rmsk gene 10327633 10328495 . - . gene_id "ERVLE_10p14g"; transcript_id "ERVLE_10p14g"; locus "ERVLE_10p14g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2368"; model_cov "916"; model_pct "16.2"; chr10 rmsk exon 10327633 10328008 713 - . gene_id "ERVLE_10p14g"; transcript_id "ERVLE_10p14g"; locus "ERVLE_10p14g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2368"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "1719"; repStart "-3564"; chr10 rmsk exon 10327991 10328495 1354 - . gene_id "ERVLE_10p14g"; transcript_id "ERVLE_10p14g"; locus "ERVLE_10p14g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2368"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "827"; repStart "-4308"; ### ERVLE_10p14h ### chr10 rmsk gene 10387877 10391051 . - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2370"; model_cov "2015"; model_pct "35.6"; chr10 rmsk exon 10387877 10388667 1167 - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2370"; repClass "LTR"; repEnd "5249"; repFamily "ERVL"; repLeft "4431"; repStart "-418"; chr10 rmsk exon 10388675 10388825 327 - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2370"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "4501"; repStart "-1009"; chr10 rmsk exon 10388843 10389114 518 - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2370"; repClass "LTR"; repEnd "4146"; repFamily "ERVL"; repLeft "3847"; repStart "-1521"; chr10 rmsk exon 10389381 10389623 574 - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2370"; repClass "LTR"; repEnd "3469"; repFamily "ERVL"; repLeft "3225"; repStart "-2198"; chr10 rmsk exon 10390538 10391051 483 - . gene_id "ERVLE_10p14h"; transcript_id "ERVLE_10p14h"; locus "ERVLE_10p14h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2370"; repClass "LTR"; repEnd "1811"; repFamily "ERVL"; repLeft "1314"; repStart "-3856"; ### ERVLE_10p14i ### chr10 rmsk gene 10444760 10446557 . + . gene_id "ERVLE_10p14i"; transcript_id "ERVLE_10p14i"; locus "ERVLE_10p14i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2371"; model_cov "1715"; model_pct "30.3"; chr10 rmsk exon 10444760 10445416 1276 + . gene_id "ERVLE_10p14i"; transcript_id "ERVLE_10p14i"; locus "ERVLE_10p14i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2371"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "-2475"; repStart "2506"; chr10 rmsk exon 10445496 10446051 408 + . gene_id "ERVLE_10p14i"; transcript_id "ERVLE_10p14i"; locus "ERVLE_10p14i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2371"; repClass "LTR"; repEnd "3876"; repFamily "ERVL"; repLeft "-1791"; repStart "3330"; chr10 rmsk exon 10446085 10446557 798 + . gene_id "ERVLE_10p14i"; transcript_id "ERVLE_10p14i"; locus "ERVLE_10p14i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2371"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "-929"; repStart "4255"; ### ERVLB4_10p14 ### chr10 rmsk gene 10766093 10767170 . - . gene_id "ERVLB4_10p14"; transcript_id "ERVLB4_10p14"; locus "ERVLB4_10p14"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1080"; model_cov "920"; model_pct "16.1"; chr10 rmsk exon 10766093 10766236 417 - . gene_id "ERVLB4_10p14"; transcript_id "ERVLB4_10p14"; locus "ERVLB4_10p14"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1080"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "4709"; repStart "-865"; chr10 rmsk exon 10766404 10767170 1370 - . gene_id "ERVLB4_10p14"; transcript_id "ERVLB4_10p14"; locus "ERVLB4_10p14"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1080"; repClass "LTR"; repEnd "4406"; repFamily "ERVL"; repLeft "3626"; repStart "-1308"; ### ERVL_10p14 ### chr10 rmsk gene 11491174 11492266 . + . gene_id "ERVL_10p14"; transcript_id "ERVL_10p14"; locus "ERVL_10p14"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0279"; model_cov "1146"; model_pct "19.9"; chr10 rmsk exon 11491174 11492266 5257 + . gene_id "ERVL_10p14"; transcript_id "ERVL_10p14"; locus "ERVL_10p14"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0279"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4611"; ### ERVLE_10p13a ### chr10 rmsk gene 12893390 12895593 . - . gene_id "ERVLE_10p13a"; transcript_id "ERVLE_10p13a"; locus "ERVLE_10p13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2372"; model_cov "1628"; model_pct "28.7"; chr10 rmsk exon 12893390 12893909 853 - . gene_id "ERVLE_10p13a"; transcript_id "ERVLE_10p13a"; locus "ERVLE_10p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2372"; repClass "LTR"; repEnd "2186"; repFamily "ERVL"; repLeft "1571"; repStart "-3481"; chr10 rmsk exon 12894475 12895255 1426 - . gene_id "ERVLE_10p13a"; transcript_id "ERVLE_10p13a"; locus "ERVLE_10p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2372"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "761"; repStart "-4052"; chr10 rmsk exon 12895435 12895593 1426 - . gene_id "ERVLE_10p13a"; transcript_id "ERVLE_10p13a"; locus "ERVLE_10p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2372"; repClass "LTR"; repEnd "760"; repFamily "ERVL"; repLeft "601"; repStart "-4907"; ### ERVLE_10p13b ### chr10 rmsk gene 13003971 13007597 . - . gene_id "ERVLE_10p13b"; transcript_id "ERVLE_10p13b"; locus "ERVLE_10p13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2373"; model_cov "3647"; model_pct "64.4"; chr10 rmsk exon 13003971 13006665 9955 - . gene_id "ERVLE_10p13b"; transcript_id "ERVLE_10p13b"; locus "ERVLE_10p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2373"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "2087"; repStart "-811"; chr10 rmsk exon 13006674 13007391 1440 - . gene_id "ERVLE_10p13b"; transcript_id "ERVLE_10p13b"; locus "ERVLE_10p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2373"; repClass "LTR"; repEnd "1828"; repFamily "ERVL"; repLeft "1065"; repStart "-3839"; chr10 rmsk exon 13007485 13007597 341 - . gene_id "ERVLE_10p13b"; transcript_id "ERVLE_10p13b"; locus "ERVLE_10p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2373"; repClass "LTR"; repEnd "902"; repFamily "ERVL"; repLeft "787"; repStart "-4765"; ### MER61_10p13 ### chr10 rmsk gene 13066618 13072809 . + . gene_id "MER61_10p13"; transcript_id "MER61_10p13"; locus "MER61_10p13"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0246"; model_cov "5190"; model_pct "99.5"; chr10 rmsk exon 13066618 13067021 2055 + . gene_id "MER61_10p13"; transcript_id "MER61_10p13"; locus "MER61_10p13"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0246"; repClass "LTR"; repEnd "315"; repFamily "ERV1"; repLeft "-113"; repStart "-173"; chr10 rmsk exon 13067022 13068973 29184 + . gene_id "MER61_10p13"; transcript_id "MER61_10p13"; locus "MER61_10p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0246"; repClass "LTR"; repEnd "2081"; repFamily "ERV1"; repLeft "-3136"; repStart "22"; chr10 rmsk exon 13069264 13072403 29184 + . gene_id "MER61_10p13"; transcript_id "MER61_10p13"; locus "MER61_10p13"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0246"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "-4"; repStart "2082"; chr10 rmsk exon 13072404 13072809 2238 + . gene_id "MER61_10p13"; transcript_id "MER61_10p13"; locus "MER61_10p13"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0246"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "6"; ### HERVIP10FH_10p13 ### chr10 rmsk gene 13079022 13081163 . + . gene_id "HERVIP10FH_10p13"; transcript_id "HERVIP10FH_10p13"; locus "HERVIP10FH_10p13"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0105"; model_cov "1107"; model_pct "21.7"; chr10 rmsk exon 13079022 13079201 1264 + . gene_id "HERVIP10FH_10p13"; transcript_id "HERVIP10FH_10p13"; locus "HERVIP10FH_10p13"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0105"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "453"; chr10 rmsk exon 13079205 13079874 2020 + . gene_id "HERVIP10FH_10p13"; transcript_id "HERVIP10FH_10p13"; locus "HERVIP10FH_10p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0105"; repClass "LTR"; repEnd "829"; repFamily "ERV1"; repLeft "-4273"; repStart "4"; chr10 rmsk exon 13080303 13080597 1663 + . gene_id "HERVIP10FH_10p13"; transcript_id "HERVIP10FH_10p13"; locus "HERVIP10FH_10p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0105"; repClass "LTR"; repEnd "2282"; repFamily "ERV1"; repLeft "-2820"; repStart "2041"; chr10 rmsk exon 13081122 13081163 268 + . gene_id "HERVIP10FH_10p13"; transcript_id "HERVIP10FH_10p13"; locus "HERVIP10FH_10p13"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0105"; repClass "LTR"; repEnd "2724"; repFamily "ERV1"; repLeft "-2378"; repStart "2683"; ### HERVE_10p13a ### chr10 rmsk gene 14980513 14982700 . - . gene_id "HERVE_10p13a"; transcript_id "HERVE_10p13a"; locus "HERVE_10p13a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0099"; model_cov "2212"; model_pct "28.3"; chr10 rmsk exon 14980513 14982700 15370 - . gene_id "HERVE_10p13a"; transcript_id "HERVE_10p13a"; locus "HERVE_10p13a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0099"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "1108"; repStart "-4493"; ### HERVE_10p13b ### chr10 rmsk gene 14990821 14994887 . - . gene_id "HERVE_10p13b"; transcript_id "HERVE_10p13b"; locus "HERVE_10p13b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0100"; model_cov "4066"; model_pct "52.0"; chr10 rmsk exon 14990821 14994887 28740 - . gene_id "HERVE_10p13b"; transcript_id "HERVE_10p13b"; locus "HERVE_10p13b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0100"; repClass "LTR"; repEnd "5174"; repFamily "ERV1"; repLeft "1108"; repStart "-2639"; ### HERVE_10p13c ### chr10 rmsk gene 15013301 15015356 . - . gene_id "HERVE_10p13c"; transcript_id "HERVE_10p13c"; locus "HERVE_10p13c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0101"; model_cov "2043"; model_pct "26.1"; chr10 rmsk exon 15013301 15015356 14958 - . gene_id "HERVE_10p13c"; transcript_id "HERVE_10p13c"; locus "HERVE_10p13c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0101"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "3122"; repStart "-2648"; ### ERVLB4_10p13a ### chr10 rmsk gene 15390575 15391895 . - . gene_id "ERVLB4_10p13a"; transcript_id "ERVLB4_10p13a"; locus "ERVLB4_10p13a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1081"; model_cov "837"; model_pct "14.6"; chr10 rmsk exon 15390575 15390799 946 - . gene_id "ERVLB4_10p13a"; transcript_id "ERVLB4_10p13a"; locus "ERVLB4_10p13a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1081"; repClass "LTR"; repEnd "229"; repFamily "ERVL"; repLeft "4"; repStart "-168"; chr10 rmsk exon 15390800 15391101 4066 - . gene_id "ERVLB4_10p13a"; transcript_id "ERVLB4_10p13a"; locus "ERVLB4_10p13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1081"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "5375"; repStart "-4"; chr10 rmsk exon 15391402 15391895 4066 - . gene_id "ERVLB4_10p13a"; transcript_id "ERVLB4_10p13a"; locus "ERVLB4_10p13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1081"; repClass "LTR"; repEnd "5374"; repFamily "ERVL"; repLeft "4872"; repStart "-340"; ### ERVLB4_10p13b ### chr10 rmsk gene 16067848 16069020 . + . gene_id "ERVLB4_10p13b"; transcript_id "ERVLB4_10p13b"; locus "ERVLB4_10p13b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1083"; model_cov "728"; model_pct "12.7"; chr10 rmsk exon 16067848 16068296 1549 + . gene_id "ERVLB4_10p13b"; transcript_id "ERVLB4_10p13b"; locus "ERVLB4_10p13b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1083"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-7"; repStart "2"; chr10 rmsk exon 16068301 16069020 3984 + . gene_id "ERVLB4_10p13b"; transcript_id "ERVLB4_10p13b"; locus "ERVLB4_10p13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1083"; repClass "LTR"; repEnd "730"; repFamily "ERVL"; repLeft "-4984"; repStart "2"; ### HERVL_10p13a ### chr10 rmsk gene 16164982 16171514 . - . gene_id "HERVL_10p13a"; transcript_id "HERVL_10p13a"; locus "HERVL_10p13a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0838"; model_cov "5654"; model_pct "100.0"; chr10 rmsk exon 16164982 16165423 3358 - . gene_id "HERVL_10p13a"; transcript_id "HERVL_10p13a"; locus "HERVL_10p13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0838"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 16165424 16167378 14696 - . gene_id "HERVL_10p13a"; transcript_id "HERVL_10p13a"; locus "HERVL_10p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0838"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3709"; repStart "0"; chr10 rmsk exon 16167828 16171514 26658 - . gene_id "HERVL_10p13a"; transcript_id "HERVL_10p13a"; locus "HERVL_10p13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0838"; repClass "LTR"; repEnd "3710"; repFamily "ERVL"; repLeft "1"; repStart "-1944"; ### ERVLB4_10p13c ### chr10 rmsk gene 16183678 16192827 . - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1084"; model_cov "5719"; model_pct "100.0"; chr10 rmsk exon 16183678 16185782 10482 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "5430"; repFamily "ERVL"; repLeft "3327"; repStart "-284"; chr10 rmsk exon 16185785 16186035 1323 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "2217"; repFamily "ERVL"; repLeft "1956"; repStart "-3497"; chr10 rmsk exon 16186032 16186686 3833 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "3320"; repFamily "ERVL"; repLeft "2664"; repStart "-2394"; chr10 rmsk exon 16187137 16187525 2440 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "2293"; repStart "-3034"; chr10 rmsk exon 16188079 16188726 4212 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "2293"; repFamily "ERVL"; repLeft "1630"; repStart "-3421"; chr10 rmsk exon 16189229 16189442 4212 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "1415"; repStart "-4085"; chr10 rmsk exon 16189977 16190462 5194 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "1422"; repFamily "ERVL"; repLeft "953"; repStart "-4292"; chr10 rmsk exon 16190766 16191356 5194 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "952"; repFamily "ERVL"; repLeft "372"; repStart "-4762"; chr10 rmsk exon 16191587 16191976 1777 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "1"; repStart "-5327"; chr10 rmsk exon 16192062 16192080 2266 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "462"; repStart "-40"; chr10 rmsk exon 16192370 16192827 2266 - . gene_id "ERVLB4_10p13c"; transcript_id "ERVLB4_10p13c"; locus "ERVLB4_10p13c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1084"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "5"; repStart "-59"; ### ERV316A3_10p13a ### chr10 rmsk gene 16234878 16236343 . + . gene_id "ERV316A3_10p13a"; transcript_id "ERV316A3_10p13a"; locus "ERV316A3_10p13a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1787"; model_cov "1068"; model_pct "20.4"; chr10 rmsk exon 16234878 16235417 1826 + . gene_id "ERV316A3_10p13a"; transcript_id "ERV316A3_10p13a"; locus "ERV316A3_10p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1787"; repClass "LTR"; repEnd "3979"; repFamily "ERVL"; repLeft "-1247"; repStart "3412"; chr10 rmsk exon 16235437 16235637 1321 + . gene_id "ERV316A3_10p13a"; transcript_id "ERV316A3_10p13a"; locus "ERV316A3_10p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1787"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-757"; repStart "4279"; chr10 rmsk exon 16236015 16236343 1321 + . gene_id "ERV316A3_10p13a"; transcript_id "ERV316A3_10p13a"; locus "ERV316A3_10p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1787"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "-445"; repStart "4470"; ### HERVL_10p13b ### chr10 rmsk gene 16447745 16449831 . - . gene_id "HERVL_10p13b"; transcript_id "HERVL_10p13b"; locus "HERVL_10p13b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0839"; model_cov "1954"; model_pct "34.6"; chr10 rmsk exon 16447745 16449379 12950 - . gene_id "HERVL_10p13b"; transcript_id "HERVL_10p13b"; locus "HERVL_10p13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0839"; repClass "LTR"; repEnd "3675"; repFamily "ERVL"; repLeft "2041"; repStart "-1979"; chr10 rmsk exon 16449527 16449831 9336 - . gene_id "HERVL_10p13b"; transcript_id "HERVL_10p13b"; locus "HERVL_10p13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0839"; repClass "LTR"; repEnd "1554"; repFamily "ERVL"; repLeft "1234"; repStart "-4100"; ### HERVL_10p13c ### chr10 rmsk gene 16449911 16451399 . - . gene_id "HERVL_10p13c"; transcript_id "HERVL_10p13c"; locus "HERVL_10p13c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0840"; model_cov "1194"; model_pct "21.1"; chr10 rmsk exon 16449911 16451044 9336 - . gene_id "HERVL_10p13c"; transcript_id "HERVL_10p13c"; locus "HERVL_10p13c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0840"; repClass "LTR"; repEnd "1554"; repFamily "ERVL"; repLeft "360"; repStart "-4100"; chr10 rmsk exon 16451045 16451399 1924 - . gene_id "HERVL_10p13c"; transcript_id "HERVL_10p13c"; locus "HERVL_10p13c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0840"; repClass "LTR"; repEnd "258"; repFamily "ERVL"; repLeft "-100"; repStart "-195"; ### HERV9_10p13 ### chr10 rmsk gene 17011188 17018975 . - . gene_id "HERV9_10p13"; transcript_id "HERV9_10p13"; locus "HERV9_10p13"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0121"; model_cov "5314"; model_pct "63.0"; chr10 rmsk exon 17011188 17011931 5617 - . gene_id "HERV9_10p13"; transcript_id "HERV9_10p13"; locus "HERV9_10p13"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0121"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 17011932 17018274 24611 - . gene_id "HERV9_10p13"; transcript_id "HERV9_10p13"; locus "HERV9_10p13"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0121"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "3122"; repStart "0"; chr10 rmsk exon 17018301 17018975 4768 - . gene_id "HERV9_10p13"; transcript_id "HERV9_10p13"; locus "HERV9_10p13"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0121"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10p13b ### chr10 rmsk gene 17250750 17255221 . - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1789"; model_cov "2812"; model_pct "53.8"; chr10 rmsk exon 17250750 17251246 2274 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3537"; repStart "-1218"; chr10 rmsk exon 17251542 17251831 2274 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "3536"; repFamily "ERVL"; repLeft "3248"; repStart "-1690"; chr10 rmsk exon 17251891 17252071 700 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2904"; repStart "-2141"; chr10 rmsk exon 17252143 17252204 263 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2904"; repStart "-2261"; chr10 rmsk exon 17252210 17252271 263 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2904"; repStart "-2261"; chr10 rmsk exon 17252277 17252338 263 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2904"; repStart "-2261"; chr10 rmsk exon 17252344 17252405 274 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2904"; repStart "-2261"; chr10 rmsk exon 17252411 17252472 263 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2904"; repStart "-2261"; chr10 rmsk exon 17252478 17253024 4713 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2394"; repStart "-2261"; chr10 rmsk exon 17253322 17254386 4713 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "1397"; repStart "-2833"; chr10 rmsk exon 17254462 17254540 1404 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "407"; repStart "0"; chr10 rmsk exon 17254890 17255221 1404 - . gene_id "ERV316A3_10p13b"; transcript_id "ERV316A3_10p13b"; locus "ERV316A3_10p13b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1789"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "57"; repStart "-74"; ### MER4_10p12.33 ### chr10 rmsk gene 17379427 17385917 . + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0483"; model_cov "4494"; model_pct "68.1"; chr10 rmsk exon 17379427 17379884 3284 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0483"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 17379888 17380442 2724 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "-5982"; repStart "1"; chr10 rmsk exon 17380437 17380528 344 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "-662"; repFamily "ERV1"; repLeft "-7260"; repStart "-723"; chr10 rmsk exon 17380617 17380789 920 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "1165"; repFamily "ERV1"; repLeft "-5433"; repStart "993"; chr10 rmsk exon 17380908 17381146 612 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "1264"; repFamily "ERV1"; repLeft "-5334"; repStart "1112"; chr10 rmsk exon 17381173 17381822 3921 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1804"; chr10 rmsk exon 17382062 17382238 1087 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "2913"; repFamily "ERV1"; repLeft "-3685"; repStart "2737"; chr10 rmsk exon 17382258 17382291 14251 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "3997"; repFamily "ERV1"; repLeft "-2601"; repStart "3964"; chr10 rmsk exon 17382566 17385066 14251 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0483"; repClass "LTR"; repEnd "6592"; repFamily "ERV1"; repLeft "-6"; repStart "3998"; chr10 rmsk exon 17385078 17385378 2873 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0483"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-162"; repStart "1"; chr10 rmsk exon 17385755 17385917 2873 + . gene_id "MER4_10p12.33"; transcript_id "MER4_10p12.33"; locus "MER4_10p12.33"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0483"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "311"; ### HERVH_10p12.33 ### chr10 rmsk gene 17630037 17632161 . - . gene_id "HERVH_10p12.33"; transcript_id "HERVH_10p12.33"; locus "HERVH_10p12.33"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0798"; model_cov "2138"; model_pct "27.7"; chr10 rmsk exon 17630037 17632054 13834 - . gene_id "HERVH_10p12.33"; transcript_id "HERVH_10p12.33"; locus "HERVH_10p12.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0798"; repClass "LTR"; repEnd "2139"; repFamily "ERV1"; repLeft "1"; repStart "-5574"; chr10 rmsk exon 17632055 17632161 929 - . gene_id "HERVH_10p12.33"; transcript_id "HERVH_10p12.33"; locus "HERVH_10p12.33"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0798"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "366"; repStart "0"; ### ERV316A3_10p12.33 ### chr10 rmsk gene 18006456 18008712 . - . gene_id "ERV316A3_10p12.33"; transcript_id "ERV316A3_10p12.33"; locus "ERV316A3_10p12.33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1790"; model_cov "535"; model_pct "10.2"; chr10 rmsk exon 18006456 18006987 1322 - . gene_id "ERV316A3_10p12.33"; transcript_id "ERV316A3_10p12.33"; locus "ERV316A3_10p12.33"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1790"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "7"; repStart "0"; chr10 rmsk exon 18007110 18007442 330 - . gene_id "ERV316A3_10p12.33"; transcript_id "ERV316A3_10p12.33"; locus "ERV316A3_10p12.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1790"; repClass "LTR"; repEnd "5112"; repFamily "ERVL"; repLeft "4776"; repStart "-114"; chr10 rmsk exon 18007996 18008119 330 - . gene_id "ERV316A3_10p12.33"; transcript_id "ERV316A3_10p12.33"; locus "ERV316A3_10p12.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1790"; repClass "LTR"; repEnd "4775"; repFamily "ERVL"; repLeft "4660"; repStart "-451"; chr10 rmsk exon 18008624 18008712 258 - . gene_id "ERV316A3_10p12.33"; transcript_id "ERV316A3_10p12.33"; locus "ERV316A3_10p12.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1790"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "4384"; repStart "-758"; ### HERVIP10F_10p12.31 ### chr10 rmsk gene 18573539 18578111 . + . gene_id "HERVIP10F_10p12.31"; transcript_id "HERVIP10F_10p12.31"; locus "HERVIP10F_10p12.31"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0069"; model_cov "4132"; model_pct "53.4"; chr10 rmsk exon 18573539 18576517 23677 + . gene_id "HERVIP10F_10p12.31"; transcript_id "HERVIP10F_10p12.31"; locus "HERVIP10F_10p12.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0069"; repClass "LTR"; repEnd "6106"; repFamily "ERV1"; repLeft "-1631"; repStart "3107"; chr10 rmsk exon 18576521 18577649 9195 + . gene_id "HERVIP10F_10p12.31"; transcript_id "HERVIP10F_10p12.31"; locus "HERVIP10F_10p12.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0069"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "6604"; chr10 rmsk exon 18577650 18578111 3276 + . gene_id "HERVIP10F_10p12.31"; transcript_id "HERVIP10F_10p12.31"; locus "HERVIP10F_10p12.31"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0069"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_10p12.31 ### chr10 rmsk gene 18874333 18879700 . + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1086"; model_cov "4714"; model_pct "82.5"; chr10 rmsk exon 18874333 18875259 17828 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4565"; repStart "131"; chr10 rmsk exon 18875285 18877341 17828 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-2438"; repStart "1150"; chr10 rmsk exon 18877627 18878379 17828 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "4005"; repFamily "ERVL"; repLeft "-1709"; repStart "3277"; chr10 rmsk exon 18878384 18879116 3879 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "5699"; repFamily "ERVL"; repLeft "-15"; repStart "4924"; chr10 rmsk exon 18879154 18879220 383 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "-9"; repStart "5638"; chr10 rmsk exon 18879230 18879700 1431 + . gene_id "ERVLB4_10p12.31"; transcript_id "ERVLB4_10p12.31"; locus "ERVLB4_10p12.31"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1086"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "-10"; ### MER34B_10p12.31 ### chr10 rmsk gene 19515943 19517902 . - . gene_id "MER34B_10p12.31"; transcript_id "MER34B_10p12.31"; locus "MER34B_10p12.31"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0185"; model_cov "937"; model_pct "17.5"; chr10 rmsk exon 19515943 19516039 453 - . gene_id "MER34B_10p12.31"; transcript_id "MER34B_10p12.31"; locus "MER34B_10p12.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0185"; repClass "LTR"; repEnd "2090"; repFamily "ERV1"; repLeft "1986"; repStart "-3266"; chr10 rmsk exon 19516062 19516625 1228 - . gene_id "MER34B_10p12.31"; transcript_id "MER34B_10p12.31"; locus "MER34B_10p12.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0185"; repClass "LTR"; repEnd "1806"; repFamily "ERV1"; repLeft "1216"; repStart "-3550"; chr10 rmsk exon 19516876 19517016 394 - . gene_id "MER34B_10p12.31"; transcript_id "MER34B_10p12.31"; locus "MER34B_10p12.31"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0185"; repClass "LTR"; repEnd "430"; repFamily "ERV1"; repLeft "294"; repStart "-155"; chr10 rmsk exon 19517670 19517902 719 - . gene_id "MER34B_10p12.31"; transcript_id "MER34B_10p12.31"; locus "MER34B_10p12.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0185"; repClass "LTR"; repEnd "-585"; repFamily "ERV1"; repLeft "-828"; repStart "-5941"; ### HERVH_10p12.31 ### chr10 rmsk gene 20119204 20124934 . - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0799"; model_cov "4910"; model_pct "63.7"; chr10 rmsk exon 20119204 20119603 2479 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 20119604 20119981 2312 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 20119980 20120200 1386 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr10 rmsk exon 20120198 20120858 4436 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr10 rmsk exon 20120862 20121360 3322 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr10 rmsk exon 20121351 20121498 902 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 20121493 20124531 20034 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr10 rmsk exon 20124534 20124934 2482 - . gene_id "HERVH_10p12.31"; transcript_id "HERVH_10p12.31"; locus "HERVH_10p12.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0799"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_10p12.31a ### chr10 rmsk gene 21636985 21639125 . - . gene_id "HERVL40_10p12.31a"; transcript_id "HERVL40_10p12.31a"; locus "HERVL40_10p12.31a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0276"; model_cov "1912"; model_pct "34.6"; chr10 rmsk exon 21636985 21638158 3225 - . gene_id "HERVL40_10p12.31a"; transcript_id "HERVL40_10p12.31a"; locus "HERVL40_10p12.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0276"; repClass "LTR"; repEnd "2761"; repFamily "ERVL"; repLeft "1530"; repStart "-2769"; chr10 rmsk exon 21638343 21638555 629 - . gene_id "HERVL40_10p12.31a"; transcript_id "HERVL40_10p12.31a"; locus "HERVL40_10p12.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0276"; repClass "LTR"; repEnd "1535"; repFamily "ERVL"; repLeft "1311"; repStart "-3995"; chr10 rmsk exon 21638678 21638792 300 - . gene_id "HERVL40_10p12.31a"; transcript_id "HERVL40_10p12.31a"; locus "HERVL40_10p12.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0276"; repClass "LTR"; repEnd "1312"; repFamily "ERVL"; repLeft "1195"; repStart "-4218"; chr10 rmsk exon 21638799 21639125 1014 - . gene_id "HERVL40_10p12.31a"; transcript_id "HERVL40_10p12.31a"; locus "HERVL40_10p12.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0276"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "2"; repStart "-5188"; ### HERVL40_10p12.31b ### chr10 rmsk gene 21813720 21815543 . + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0277"; model_cov "1021"; model_pct "18.5"; chr10 rmsk exon 21813720 21814047 1398 + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0277"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "127"; chr10 rmsk exon 21814049 21814626 1441 + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0277"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "1"; chr10 rmsk exon 21814678 21814934 597 + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0277"; repClass "LTR"; repEnd "827"; repFamily "ERVL"; repLeft "-4703"; repStart "597"; chr10 rmsk exon 21815035 21815242 520 + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0277"; repClass "LTR"; repEnd "1159"; repFamily "ERVL"; repLeft "-4371"; repStart "937"; chr10 rmsk exon 21815417 21815543 465 + . gene_id "HERVL40_10p12.31b"; transcript_id "HERVL40_10p12.31b"; locus "HERVL40_10p12.31b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0277"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-54"; repStart "289"; ### HERVL40_10p12.31c ### chr10 rmsk gene 22096580 22098877 . - . gene_id "HERVL40_10p12.31c"; transcript_id "HERVL40_10p12.31c"; locus "HERVL40_10p12.31c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0278"; model_cov "684"; model_pct "12.4"; chr10 rmsk exon 22096580 22097026 1315 - . gene_id "HERVL40_10p12.31c"; transcript_id "HERVL40_10p12.31c"; locus "HERVL40_10p12.31c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0278"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "-116"; repStart "-2"; chr10 rmsk exon 22097030 22097358 766 - . gene_id "HERVL40_10p12.31c"; transcript_id "HERVL40_10p12.31c"; locus "HERVL40_10p12.31c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0278"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "5301"; repStart "-1"; chr10 rmsk exon 22098099 22098291 527 - . gene_id "HERVL40_10p12.31c"; transcript_id "HERVL40_10p12.31c"; locus "HERVL40_10p12.31c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0278"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "5013"; repStart "-324"; chr10 rmsk exon 22098593 22098877 629 - . gene_id "HERVL40_10p12.31c"; transcript_id "HERVL40_10p12.31c"; locus "HERVL40_10p12.31c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0278"; repClass "LTR"; repEnd "4684"; repFamily "ERVL"; repLeft "4421"; repStart "-846"; ### HERV9_10p12.31 ### chr10 rmsk gene 22138857 22146509 . + . gene_id "HERV9_10p12.31"; transcript_id "HERV9_10p12.31"; locus "HERV9_10p12.31"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0122"; model_cov "5711"; model_pct "67.7"; chr10 rmsk exon 22138857 22139350 3846 + . gene_id "HERV9_10p12.31"; transcript_id "HERV9_10p12.31"; locus "HERV9_10p12.31"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0122"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 22139371 22145130 31055 + . gene_id "HERV9_10p12.31"; transcript_id "HERV9_10p12.31"; locus "HERV9_10p12.31"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0122"; repClass "LTR"; repEnd "4972"; repFamily "ERV1"; repLeft "-3464"; repStart "29"; chr10 rmsk exon 22145141 22145904 5983 + . gene_id "HERV9_10p12.31"; transcript_id "HERV9_10p12.31"; locus "HERV9_10p12.31"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0122"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7668"; chr10 rmsk exon 22145905 22146509 3494 + . gene_id "HERV9_10p12.31"; transcript_id "HERV9_10p12.31"; locus "HERV9_10p12.31"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0122"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10p12.31 ### chr10 rmsk gene 22218395 22220897 . + . gene_id "ERV316A3_10p12.31"; transcript_id "ERV316A3_10p12.31"; locus "ERV316A3_10p12.31"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1791"; model_cov "1602"; model_pct "30.7"; chr10 rmsk exon 22218395 22218798 1252 + . gene_id "ERV316A3_10p12.31"; transcript_id "ERV316A3_10p12.31"; locus "ERV316A3_10p12.31"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1791"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-17"; repStart "6"; chr10 rmsk exon 22219007 22219296 523 + . gene_id "ERV316A3_10p12.31"; transcript_id "ERV316A3_10p12.31"; locus "ERV316A3_10p12.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1791"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-4757"; repStart "169"; chr10 rmsk exon 22219374 22220274 1403 + . gene_id "ERV316A3_10p12.31"; transcript_id "ERV316A3_10p12.31"; locus "ERV316A3_10p12.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1791"; repClass "LTR"; repEnd "1539"; repFamily "ERVL"; repLeft "-3687"; repStart "599"; chr10 rmsk exon 22220529 22220897 1403 + . gene_id "ERV316A3_10p12.31"; transcript_id "ERV316A3_10p12.31"; locus "ERV316A3_10p12.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1791"; repClass "LTR"; repEnd "1902"; repFamily "ERVL"; repLeft "-3324"; repStart "1540"; ### ERVLE_10p12.31 ### chr10 rmsk gene 22296514 22297364 . + . gene_id "ERVLE_10p12.31"; transcript_id "ERVLE_10p12.31"; locus "ERVLE_10p12.31"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2375"; model_cov "577"; model_pct "10.2"; chr10 rmsk exon 22296514 22296851 1221 + . gene_id "ERVLE_10p12.31"; transcript_id "ERVLE_10p12.31"; locus "ERVLE_10p12.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2375"; repClass "LTR"; repEnd "5005"; repFamily "ERVL"; repLeft "-662"; repStart "4652"; chr10 rmsk exon 22297151 22297364 1221 + . gene_id "ERVLE_10p12.31"; transcript_id "ERVLE_10p12.31"; locus "ERVLE_10p12.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2375"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "-437"; repStart "5006"; ### ERV316A3_10p12.2 ### chr10 rmsk gene 22422045 22425685 . + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1792"; model_cov "3323"; model_pct "63.6"; chr10 rmsk exon 22422045 22422318 891 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "1489"; repFamily "ERVL"; repLeft "-3737"; repStart "1183"; chr10 rmsk exon 22422513 22423020 1081 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "-3135"; repStart "1455"; chr10 rmsk exon 22423056 22423267 1365 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "-2413"; repStart "2593"; chr10 rmsk exon 22423572 22424185 1490 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-1821"; repStart "2695"; chr10 rmsk exon 22424157 22425533 1914 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "5165"; repFamily "ERVL"; repLeft "-61"; repStart "3714"; chr10 rmsk exon 22425613 22425685 234 + . gene_id "ERV316A3_10p12.2"; transcript_id "ERV316A3_10p12.2"; locus "ERV316A3_10p12.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1792"; repClass "LTR"; repEnd "81"; repFamily "ERVL"; repLeft "-375"; repStart "16"; ### MER61_10p12.2 ### chr10 rmsk gene 22825722 22831839 . - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0247"; model_cov "4268"; model_pct "81.8"; chr10 rmsk exon 22825722 22826057 1780 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0247"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 22826058 22829687 21815 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0247"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1483"; repStart "0"; chr10 rmsk exon 22830016 22830077 21815 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0247"; repClass "LTR"; repEnd "1482"; repFamily "ERV1"; repLeft "1412"; repStart "-3735"; chr10 rmsk exon 22830494 22830560 336 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0247"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "631"; repStart "-4517"; chr10 rmsk exon 22831373 22831774 1464 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0247"; repClass "LTR"; repEnd "396"; repFamily "ERV1"; repLeft "1"; repStart "-4821"; chr10 rmsk exon 22831785 22831839 345 - . gene_id "MER61_10p12.2"; transcript_id "MER61_10p12.2"; locus "MER61_10p12.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0247"; repClass "LTR"; repEnd "61"; repFamily "ERV1"; repLeft "7"; repStart "-280"; ### HERVW_10p12.2 ### chr10 rmsk gene 23296192 23302161 . - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0199"; model_cov "4352"; model_pct "50.5"; chr10 rmsk exon 23296192 23296527 2740 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr10 rmsk exon 23296531 23296818 2430 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8335"; repStart "-4"; chr10 rmsk exon 23296809 23296847 303 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr10 rmsk exon 23296841 23297216 30542 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5617"; repStart "-2607"; chr10 rmsk exon 23297272 23297973 30542 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "5616"; repFamily "ERV1"; repLeft "4927"; repStart "-3010"; chr10 rmsk exon 23298284 23299695 30542 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "4926"; repFamily "ERV1"; repLeft "3522"; repStart "-3700"; chr10 rmsk exon 23299995 23301140 30542 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "3521"; repFamily "ERV1"; repLeft "2390"; repStart "-5105"; chr10 rmsk exon 23301128 23301526 3162 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "1"; repStart "-8224"; chr10 rmsk exon 23301527 23302161 3731 - . gene_id "HERVW_10p12.2"; transcript_id "HERVW_10p12.2"; locus "HERVW_10p12.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0199"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERVLE_10p12.2a ### chr10 rmsk gene 23337763 23339497 . + . gene_id "ERVLE_10p12.2a"; transcript_id "ERVLE_10p12.2a"; locus "ERVLE_10p12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2377"; model_cov "1596"; model_pct "28.2"; chr10 rmsk exon 23337763 23338725 3893 + . gene_id "ERVLE_10p12.2a"; transcript_id "ERVLE_10p12.2a"; locus "ERVLE_10p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2377"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "-1111"; repStart "3529"; chr10 rmsk exon 23338949 23339497 2080 + . gene_id "ERVLE_10p12.2a"; transcript_id "ERVLE_10p12.2a"; locus "ERVLE_10p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2377"; repClass "LTR"; repEnd "5167"; repFamily "ERVL"; repLeft "-500"; repStart "4598"; ### ERVLE_10p12.2b ### chr10 rmsk gene 23647486 23648710 . - . gene_id "ERVLE_10p12.2b"; transcript_id "ERVLE_10p12.2b"; locus "ERVLE_10p12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2378"; model_cov "1193"; model_pct "21.1"; chr10 rmsk exon 23647486 23648391 2395 - . gene_id "ERVLE_10p12.2b"; transcript_id "ERVLE_10p12.2b"; locus "ERVLE_10p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2378"; repClass "LTR"; repEnd "5614"; repFamily "ERVL"; repLeft "4677"; repStart "-53"; chr10 rmsk exon 23648476 23648710 576 - . gene_id "ERVLE_10p12.2b"; transcript_id "ERVLE_10p12.2b"; locus "ERVLE_10p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2378"; repClass "LTR"; repEnd "4569"; repFamily "ERVL"; repLeft "4313"; repStart "-1098"; ### MER41_10p12.1 ### chr10 rmsk gene 25121537 25124380 . + . gene_id "MER41_10p12.1"; transcript_id "MER41_10p12.1"; locus "MER41_10p12.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0340"; model_cov "1835"; model_pct "30.9"; chr10 rmsk exon 25121537 25122054 13198 + . gene_id "MER41_10p12.1"; transcript_id "MER41_10p12.1"; locus "MER41_10p12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0340"; repClass "LTR"; repEnd "4427"; repFamily "ERV1"; repLeft "-1519"; repStart "4091"; chr10 rmsk exon 25122352 25123826 13198 + . gene_id "MER41_10p12.1"; transcript_id "MER41_10p12.1"; locus "MER41_10p12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0340"; repClass "LTR"; repEnd "5927"; repFamily "ERV1"; repLeft "-19"; repStart "4428"; chr10 rmsk exon 25123844 25124380 4304 + . gene_id "MER41_10p12.1"; transcript_id "MER41_10p12.1"; locus "MER41_10p12.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0340"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_10p12.1a ### chr10 rmsk gene 25716421 25722926 . + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0800"; model_cov "5758"; model_pct "74.7"; chr10 rmsk exon 25716421 25716832 2729 + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0800"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 25716835 25721923 33756 + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0800"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr10 rmsk exon 25721925 25722140 1343 + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0800"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr10 rmsk exon 25722139 25722516 2294 + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0800"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 25722517 25722926 2888 + . gene_id "HERVH_10p12.1a"; transcript_id "HERVH_10p12.1a"; locus "HERVH_10p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0800"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_10p12.1b ### chr10 rmsk gene 25768956 25774917 . - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0801"; model_cov "5154"; model_pct "66.8"; chr10 rmsk exon 25768956 25769304 2664 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "102"; repStart "-2"; chr10 rmsk exon 25769307 25769572 1792 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "7604"; repFamily "ERV1"; repLeft "7322"; repStart "-109"; chr10 rmsk exon 25769571 25769783 1348 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr10 rmsk exon 25769785 25770439 4234 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 25770442 25774433 10327 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr10 rmsk exon 25774436 25774917 3433 - . gene_id "HERVH_10p12.1b"; transcript_id "HERVH_10p12.1b"; locus "HERVH_10p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0801"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_10p12.1a ### chr10 rmsk gene 25880671 25885881 . + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1089"; model_cov "2988"; model_pct "52.3"; chr10 rmsk exon 25880671 25880736 3272 + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1089"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "-4884"; repStart "762"; chr10 rmsk exon 25882130 25882731 3272 + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1089"; repClass "LTR"; repEnd "1444"; repFamily "ERVL"; repLeft "-4270"; repStart "831"; chr10 rmsk exon 25882877 25884877 11361 + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1089"; repClass "LTR"; repEnd "5413"; repFamily "ERVL"; repLeft "-301"; repStart "3406"; chr10 rmsk exon 25885189 25885494 11361 + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1089"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5414"; chr10 rmsk exon 25885495 25885881 1423 + . gene_id "ERVLB4_10p12.1a"; transcript_id "ERVLB4_10p12.1a"; locus "ERVLB4_10p12.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1089"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-11"; repStart "1"; ### PABLA_10p12.1 ### chr10 rmsk gene 26332116 26334601 . + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0093"; model_cov "1610"; model_pct "32.1"; chr10 rmsk exon 26332116 26332715 4604 + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0093"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 26332717 26333447 5132 + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0093"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "-4289"; repStart "2"; chr10 rmsk exon 26333526 26333711 1381 + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0093"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "-4116"; repStart "717"; chr10 rmsk exon 26333704 26334207 3536 + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0093"; repClass "LTR"; repEnd "1653"; repFamily "ERV1"; repLeft "-3362"; repStart "1151"; chr10 rmsk exon 26334407 26334601 1257 + . gene_id "PABLA_10p12.1"; transcript_id "PABLA_10p12.1"; locus "PABLA_10p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0093"; repClass "LTR"; repEnd "2064"; repFamily "ERV1"; repLeft "-2951"; repStart "1862"; ### HERVL40_10p12.1 ### chr10 rmsk gene 26778654 26786076 . + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0280"; model_cov "4170"; model_pct "75.4"; chr10 rmsk exon 26778654 26779118 1465 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-5"; repStart "8"; chr10 rmsk exon 26779125 26779477 1153 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "-5169"; repStart "1"; chr10 rmsk exon 26779568 26780243 2524 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "1023"; repFamily "ERVL"; repLeft "-4507"; repStart "407"; chr10 rmsk exon 26780475 26781051 2524 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-3916"; repStart "1024"; chr10 rmsk exon 26781052 26782354 4550 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "3978"; repFamily "ERVL"; repLeft "-1552"; repStart "2526"; chr10 rmsk exon 26783483 26784105 1886 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "3970"; chr10 rmsk exon 26784352 26784532 433 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "5125"; repFamily "ERVL"; repLeft "-405"; repStart "4946"; chr10 rmsk exon 26784894 26785236 1160 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "-1"; repStart "5246"; chr10 rmsk exon 26785238 26785443 1396 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "190"; repFamily "ERVL"; repLeft "-329"; repStart "1"; chr10 rmsk exon 26785741 26786076 1396 + . gene_id "HERVL40_10p12.1"; transcript_id "HERVL40_10p12.1"; locus "HERVL40_10p12.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0280"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-2"; repStart "191"; ### PRIMA4_10p12.1 ### chr10 rmsk gene 26979406 26999995 . - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; category "mergeable*"; intModel "PRIMA4-int"; locid "PRIMA4-int_0140"; model_cov "7201"; model_pct "87.1"; chr10 rmsk exon 26979406 26981148 10488 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "2872"; repFamily "ERV1"; repLeft "1114"; repStart "-5398"; chr10 rmsk exon 26981602 26982013 2308 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "1118"; repFamily "ERV1"; repLeft "692"; repStart "-7152"; chr10 rmsk exon 26982014 26982409 2011 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "MER4A"; geneRegion "ltr"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "358"; repFamily "ERV1"; repLeft "1"; repStart "-306"; chr10 rmsk exon 26982419 26985852 20904 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "8266"; repFamily "ERV1"; repLeft "4797"; repStart "-4"; chr10 rmsk exon 26987431 26988764 11461 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "4785"; repFamily "ERV1"; repLeft "3441"; repStart "-3485"; chr10 rmsk exon 26988896 26989552 11461 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "3440"; repFamily "ERV1"; repLeft "2819"; repStart "-4830"; chr10 rmsk exon 26989555 26991275 9142 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "1768"; repFamily "ERV1"; repLeft "1"; repStart "-6502"; chr10 rmsk exon 26991276 26991439 1472 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "MER4A"; geneRegion "ltr"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "498"; repStart "0"; chr10 rmsk exon 26991729 26992255 2192 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "MER4A"; geneRegion "ltr"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "497"; repFamily "ERV1"; repLeft "-100"; repStart "-167"; chr10 rmsk exon 26992257 26992459 10673 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "7990"; repStart "0"; chr10 rmsk exon 26992509 26994168 10673 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "7989"; repFamily "ERV1"; repLeft "6309"; repStart "-281"; chr10 rmsk exon 26994194 26996168 20855 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "5502"; repFamily "ERV1"; repLeft "3442"; repStart "-2768"; chr10 rmsk exon 26996567 26997606 20855 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "2380"; repStart "-4829"; chr10 rmsk exon 26998018 26999995 20855 - . gene_id "PRIMA4_10p12.1"; transcript_id "PRIMA4_10p12.1"; locus "PRIMA4_10p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0140"; repClass "LTR"; repEnd "2379"; repFamily "ERV1"; repLeft "348"; repStart "-5891"; ### ERVLB4_10p12.1b ### chr10 rmsk gene 27424404 27432620 . + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1090"; model_cov "5344"; model_pct "93.5"; chr10 rmsk exon 27424404 27424813 1417 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr10 rmsk exon 27424845 27426997 7666 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "2231"; repFamily "ERVL"; repLeft "-3483"; repStart "50"; chr10 rmsk exon 27427002 27427356 13398 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "2804"; repFamily "ERVL"; repLeft "-2910"; repStart "2419"; chr10 rmsk exon 27427785 27427986 13398 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "3055"; repFamily "ERVL"; repLeft "-2659"; repStart "2805"; chr10 rmsk exon 27428309 27430375 13398 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-537"; repStart "3056"; chr10 rmsk exon 27430563 27430745 13398 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "5351"; repFamily "ERVL"; repLeft "-363"; repStart "5178"; chr10 rmsk exon 27430785 27430939 550 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "-72"; repStart "5479"; chr10 rmsk exon 27432155 27432227 415 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5643"; chr10 rmsk exon 27432238 27432620 1468 + . gene_id "ERVLB4_10p12.1b"; transcript_id "ERVLB4_10p12.1b"; locus "ERVLB4_10p12.1b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1090"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "-48"; repStart "5"; ### HERVH_10p12.1c ### chr10 rmsk gene 27465310 27470937 . + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0802"; model_cov "4542"; model_pct "58.9"; chr10 rmsk exon 27465310 27465760 3332 + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0802"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 27465763 27466234 2768 + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0802"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr10 rmsk exon 27466293 27468007 3648 + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0802"; repClass "LTR"; repEnd "3324"; repFamily "ERV1"; repLeft "-4389"; repStart "1724"; chr10 rmsk exon 27468005 27470486 17400 + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0802"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5229"; chr10 rmsk exon 27470487 27470937 3399 + . gene_id "HERVH_10p12.1c"; transcript_id "HERVH_10p12.1c"; locus "HERVH_10p12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0802"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_10p12.1a ### chr10 rmsk gene 28003642 28005566 . - . gene_id "ERV316A3_10p12.1a"; transcript_id "ERV316A3_10p12.1a"; locus "ERV316A3_10p12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1794"; model_cov "749"; model_pct "14.3"; chr10 rmsk exon 28003642 28004035 898 - . gene_id "ERV316A3_10p12.1a"; transcript_id "ERV316A3_10p12.1a"; locus "ERV316A3_10p12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1794"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "2"; repStart "-1"; chr10 rmsk exon 28004037 28004597 930 - . gene_id "ERV316A3_10p12.1a"; transcript_id "ERV316A3_10p12.1a"; locus "ERV316A3_10p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1794"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4600"; repStart "0"; chr10 rmsk exon 28005447 28005566 351 - . gene_id "ERV316A3_10p12.1a"; transcript_id "ERV316A3_10p12.1a"; locus "ERV316A3_10p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1794"; repClass "LTR"; repEnd "4267"; repFamily "ERVL"; repLeft "4144"; repStart "-959"; ### ERVLE_10p12.1a ### chr10 rmsk gene 28005750 28007544 . + . gene_id "ERVLE_10p12.1a"; transcript_id "ERVLE_10p12.1a"; locus "ERVLE_10p12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2380"; model_cov "1121"; model_pct "19.8"; chr10 rmsk exon 28005750 28006015 740 + . gene_id "ERVLE_10p12.1a"; transcript_id "ERVLE_10p12.1a"; locus "ERVLE_10p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2380"; repClass "LTR"; repEnd "4358"; repFamily "ERVL"; repLeft "-1309"; repStart "4070"; chr10 rmsk exon 28006263 28006355 1511 + . gene_id "ERVLE_10p12.1a"; transcript_id "ERVLE_10p12.1a"; locus "ERVLE_10p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2380"; repClass "LTR"; repEnd "4446"; repFamily "ERVL"; repLeft "-1221"; repStart "4375"; chr10 rmsk exon 28006790 28007544 1511 + . gene_id "ERVLE_10p12.1a"; transcript_id "ERVLE_10p12.1a"; locus "ERVLE_10p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2380"; repClass "LTR"; repEnd "5209"; repFamily "ERVL"; repLeft "-458"; repStart "4447"; ### ERV316A3_10p12.1b ### chr10 rmsk gene 28419974 28421564 . - . gene_id "ERV316A3_10p12.1b"; transcript_id "ERV316A3_10p12.1b"; locus "ERV316A3_10p12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1795"; model_cov "1240"; model_pct "23.7"; chr10 rmsk exon 28419974 28420179 901 - . gene_id "ERV316A3_10p12.1b"; transcript_id "ERV316A3_10p12.1b"; locus "ERV316A3_10p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1795"; repClass "LTR"; repEnd "3745"; repFamily "ERVL"; repLeft "3533"; repStart "-1481"; chr10 rmsk exon 28420336 28420672 2498 - . gene_id "ERV316A3_10p12.1b"; transcript_id "ERV316A3_10p12.1b"; locus "ERV316A3_10p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1795"; repClass "LTR"; repEnd "3535"; repFamily "ERVL"; repLeft "3184"; repStart "-1691"; chr10 rmsk exon 28420962 28421564 2498 - . gene_id "ERV316A3_10p12.1b"; transcript_id "ERV316A3_10p12.1b"; locus "ERV316A3_10p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1795"; repClass "LTR"; repEnd "3183"; repFamily "ERVL"; repLeft "2506"; repStart "-2043"; ### ERVLE_10p12.1b ### chr10 rmsk gene 28426133 28426801 . + . gene_id "ERVLE_10p12.1b"; transcript_id "ERVLE_10p12.1b"; locus "ERVLE_10p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2382"; model_cov "699"; model_pct "12.3"; chr10 rmsk exon 28426133 28426801 1464 + . gene_id "ERVLE_10p12.1b"; transcript_id "ERVLE_10p12.1b"; locus "ERVLE_10p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2382"; repClass "LTR"; repEnd "3513"; repFamily "ERVL"; repLeft "-2154"; repStart "2814"; ### ERVLE_10p12.1c ### chr10 rmsk gene 28427138 28429462 . + . gene_id "ERVLE_10p12.1c"; transcript_id "ERVLE_10p12.1c"; locus "ERVLE_10p12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2383"; model_cov "770"; model_pct "13.6"; chr10 rmsk exon 28427138 28427289 465 + . gene_id "ERVLE_10p12.1c"; transcript_id "ERVLE_10p12.1c"; locus "ERVLE_10p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2383"; repClass "LTR"; repEnd "3028"; repFamily "ERVL"; repLeft "-2639"; repStart "2883"; chr10 rmsk exon 28427320 28427786 1505 + . gene_id "ERVLE_10p12.1c"; transcript_id "ERVLE_10p12.1c"; locus "ERVLE_10p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2383"; repClass "LTR"; repEnd "3648"; repFamily "ERVL"; repLeft "-2019"; repStart "3175"; chr10 rmsk exon 28429316 28429462 363 + . gene_id "ERVLE_10p12.1c"; transcript_id "ERVLE_10p12.1c"; locus "ERVLE_10p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2383"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-821"; repStart "4694"; ### ERV316A3_10p12.1c ### chr10 rmsk gene 28847784 28849979 . + . gene_id "ERV316A3_10p12.1c"; transcript_id "ERV316A3_10p12.1c"; locus "ERV316A3_10p12.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1796"; model_cov "1427"; model_pct "27.3"; chr10 rmsk exon 28847784 28848779 1887 + . gene_id "ERV316A3_10p12.1c"; transcript_id "ERV316A3_10p12.1c"; locus "ERV316A3_10p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1796"; repClass "LTR"; repEnd "1244"; repFamily "ERVL"; repLeft "-3982"; repStart "151"; chr10 rmsk exon 28849242 28849485 775 + . gene_id "ERV316A3_10p12.1c"; transcript_id "ERV316A3_10p12.1c"; locus "ERV316A3_10p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1796"; repClass "LTR"; repEnd "2143"; repFamily "ERVL"; repLeft "-3083"; repStart "1809"; chr10 rmsk exon 28849507 28849979 1032 + . gene_id "ERV316A3_10p12.1c"; transcript_id "ERV316A3_10p12.1c"; locus "ERV316A3_10p12.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1796"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "4"; ### HARLEQUIN_10p11.23a ### chr10 rmsk gene 29360435 29365069 . - . gene_id "HARLEQUIN_10p11.23a"; transcript_id "HARLEQUIN_10p11.23a"; locus "HARLEQUIN_10p11.23a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0120"; model_cov "4157"; model_pct "60.3"; chr10 rmsk exon 29360435 29360906 3940 - . gene_id "HARLEQUIN_10p11.23a"; transcript_id "HARLEQUIN_10p11.23a"; locus "HARLEQUIN_10p11.23a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0120"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 29360907 29364467 24575 - . gene_id "HARLEQUIN_10p11.23a"; transcript_id "HARLEQUIN_10p11.23a"; locus "HARLEQUIN_10p11.23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0120"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr10 rmsk exon 29364467 29365069 4256 - . gene_id "HARLEQUIN_10p11.23a"; transcript_id "HARLEQUIN_10p11.23a"; locus "HARLEQUIN_10p11.23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0120"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1961"; repStart "-4322"; ### HERVIP10FH_10p11.23 ### chr10 rmsk gene 29436720 29439409 . - . gene_id "HERVIP10FH_10p11.23"; transcript_id "HERVIP10FH_10p11.23"; locus "HERVIP10FH_10p11.23"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0107"; model_cov "2195"; model_pct "43.0"; chr10 rmsk exon 29436720 29438848 11338 - . gene_id "HERVIP10FH_10p11.23"; transcript_id "HERVIP10FH_10p11.23"; locus "HERVIP10FH_10p11.23"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0107"; repClass "LTR"; repEnd "2196"; repFamily "ERV1"; repLeft "1"; repStart "-2906"; chr10 rmsk exon 29438849 29439409 3609 - . gene_id "HERVIP10FH_10p11.23"; transcript_id "HERVIP10FH_10p11.23"; locus "HERVIP10FH_10p11.23"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0107"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_10p11.23b ### chr10 rmsk gene 30476115 30482420 . + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0121"; model_cov "5011"; model_pct "72.7"; chr10 rmsk exon 30476115 30476564 3398 + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0121"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 30476942 30477272 2390 + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0121"; repClass "LTR"; repEnd "613"; repFamily "ERV1"; repLeft "-6283"; repStart "263"; chr10 rmsk exon 30477253 30481853 36141 + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0121"; repClass "LTR"; repEnd "5961"; repFamily "ERV1"; repLeft "-935"; repStart "1408"; chr10 rmsk exon 30481852 30481961 640 + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0121"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6788"; chr10 rmsk exon 30481962 30482420 3676 + . gene_id "HARLEQUIN_10p11.23b"; transcript_id "HARLEQUIN_10p11.23b"; locus "HARLEQUIN_10p11.23b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0121"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10p11.23 ### chr10 rmsk gene 30514933 30515815 . + . gene_id "ERV316A3_10p11.23"; transcript_id "ERV316A3_10p11.23"; locus "ERV316A3_10p11.23"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1797"; model_cov "831"; model_pct "15.9"; chr10 rmsk exon 30514933 30515543 667 + . gene_id "ERV316A3_10p11.23"; transcript_id "ERV316A3_10p11.23"; locus "ERV316A3_10p11.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1797"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "-3867"; repStart "693"; chr10 rmsk exon 30515663 30515815 289 + . gene_id "ERV316A3_10p11.23"; transcript_id "ERV316A3_10p11.23"; locus "ERV316A3_10p11.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1797"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "-3246"; repStart "1815"; ### HERVP71A_10p11.23 ### chr10 rmsk gene 30562477 30565904 . + . gene_id "HERVP71A_10p11.23"; transcript_id "HERVP71A_10p11.23"; locus "HERVP71A_10p11.23"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0048"; model_cov "2799"; model_pct "36.9"; chr10 rmsk exon 30562477 30565218 15290 + . gene_id "HERVP71A_10p11.23"; transcript_id "HERVP71A_10p11.23"; locus "HERVP71A_10p11.23"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0048"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "4791"; chr10 rmsk exon 30565220 30565266 294 + . gene_id "HERVP71A_10p11.23"; transcript_id "HERVP71A_10p11.23"; locus "HERVP71A_10p11.23"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0048"; repClass "LTR"; repEnd "56"; repFamily "ERV1"; repLeft "-554"; repStart "4"; chr10 rmsk exon 30565380 30565904 3906 + . gene_id "HERVP71A_10p11.23"; transcript_id "HERVP71A_10p11.23"; locus "HERVP71A_10p11.23"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0048"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-1"; repStart "63"; ### ERVLE_10p11.23 ### chr10 rmsk gene 30793645 30797432 . + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2384"; model_cov "1464"; model_pct "25.8"; chr10 rmsk exon 30793645 30793871 335 + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2384"; repClass "LTR"; repEnd "1288"; repFamily "ERVL"; repLeft "-4379"; repStart "1064"; chr10 rmsk exon 30796101 30796538 814 + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2384"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "-3478"; repStart "1737"; chr10 rmsk exon 30796586 30796857 548 + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2384"; repClass "LTR"; repEnd "2525"; repFamily "ERVL"; repLeft "-3142"; repStart "2229"; chr10 rmsk exon 30796871 30797260 999 + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2384"; repClass "LTR"; repEnd "2956"; repFamily "ERVL"; repLeft "-2711"; repStart "2577"; chr10 rmsk exon 30797291 30797432 369 + . gene_id "ERVLE_10p11.23"; transcript_id "ERVLE_10p11.23"; locus "ERVLE_10p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2384"; repClass "LTR"; repEnd "3536"; repFamily "ERVL"; repLeft "-2131"; repStart "3423"; ### ERV316A3_10p11.22a ### chr10 rmsk gene 31126525 31129023 . - . gene_id "ERV316A3_10p11.22a"; transcript_id "ERV316A3_10p11.22a"; locus "ERV316A3_10p11.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1799"; model_cov "2088"; model_pct "40.0"; chr10 rmsk exon 31126525 31126922 1353 - . gene_id "ERV316A3_10p11.22a"; transcript_id "ERV316A3_10p11.22a"; locus "ERV316A3_10p11.22a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1799"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr10 rmsk exon 31126923 31129023 5688 - . gene_id "ERV316A3_10p11.22a"; transcript_id "ERV316A3_10p11.22a"; locus "ERV316A3_10p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1799"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3138"; repStart "0"; ### ERV316A3_10p11.22b ### chr10 rmsk gene 31594473 31596944 . + . gene_id "ERV316A3_10p11.22b"; transcript_id "ERV316A3_10p11.22b"; locus "ERV316A3_10p11.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1800"; model_cov "1675"; model_pct "32.1"; chr10 rmsk exon 31594473 31594877 1189 + . gene_id "ERV316A3_10p11.22b"; transcript_id "ERV316A3_10p11.22b"; locus "ERV316A3_10p11.22b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1800"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "6"; chr10 rmsk exon 31594928 31595068 353 + . gene_id "ERV316A3_10p11.22b"; transcript_id "ERV316A3_10p11.22b"; locus "ERV316A3_10p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1800"; repClass "LTR"; repEnd "423"; repFamily "ERVL"; repLeft "-4803"; repStart "283"; chr10 rmsk exon 31595647 31596944 2276 + . gene_id "ERV316A3_10p11.22b"; transcript_id "ERV316A3_10p11.22b"; locus "ERV316A3_10p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1800"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "-3637"; repStart "54"; ### ERVLB4_10p11.22a ### chr10 rmsk gene 31636489 31637631 . - . gene_id "ERVLB4_10p11.22a"; transcript_id "ERVLB4_10p11.22a"; locus "ERVLB4_10p11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1093"; model_cov "614"; model_pct "10.7"; chr10 rmsk exon 31636489 31637009 2329 - . gene_id "ERVLB4_10p11.22a"; transcript_id "ERVLB4_10p11.22a"; locus "ERVLB4_10p11.22a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1093"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr10 rmsk exon 31637015 31637631 3738 - . gene_id "ERVLB4_10p11.22a"; transcript_id "ERVLB4_10p11.22a"; locus "ERVLB4_10p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1093"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5100"; repStart "0"; ### ERVLE_10p11.22a ### chr10 rmsk gene 31739581 31744654 . + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_2385"; model_cov "3124"; model_pct "55.1"; chr10 rmsk exon 31739581 31741406 2187 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "2830"; repFamily "ERVL"; repLeft "-2837"; repStart "967"; chr10 rmsk exon 31741578 31741652 504 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "3114"; repFamily "ERVL"; repLeft "-2553"; repStart "3046"; chr10 rmsk exon 31742039 31742264 504 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-2315"; repStart "3115"; chr10 rmsk exon 31742289 31742681 1722 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-12"; repStart "1"; chr10 rmsk exon 31742824 31743158 1313 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "3944"; repFamily "ERVL"; repLeft "-1723"; repStart "3607"; chr10 rmsk exon 31743246 31743287 568 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "4200"; repFamily "ERVL"; repLeft "-1467"; repStart "4159"; chr10 rmsk exon 31743696 31743881 568 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "4393"; repFamily "ERVL"; repLeft "-1274"; repStart "4201"; chr10 rmsk exon 31744281 31744654 1024 + . gene_id "ERVLE_10p11.22a"; transcript_id "ERVLE_10p11.22a"; locus "ERVLE_10p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2385"; repClass "LTR"; repEnd "5134"; repFamily "ERVL"; repLeft "-533"; repStart "4748"; ### HERVFRD_10p11.22a ### chr10 rmsk gene 31951962 31953948 . - . gene_id "HERVFRD_10p11.22a"; transcript_id "HERVFRD_10p11.22a"; locus "HERVFRD_10p11.22a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0118"; model_cov "1954"; model_pct "27.1"; chr10 rmsk exon 31951962 31952618 3957 - . gene_id "HERVFRD_10p11.22a"; transcript_id "HERVFRD_10p11.22a"; locus "HERVFRD_10p11.22a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0118"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr10 rmsk exon 31952619 31953948 6129 - . gene_id "HERVFRD_10p11.22a"; transcript_id "HERVFRD_10p11.22a"; locus "HERVFRD_10p11.22a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0118"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "5243"; repStart "-8"; ### HERVFRD_10p11.22b ### chr10 rmsk gene 31958450 31963114 . - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0120"; model_cov "2091"; model_pct "29.0"; chr10 rmsk exon 31958450 31958699 1581 - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0120"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "4672"; repStart "-2290"; chr10 rmsk exon 31960027 31960775 6384 - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0120"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "955"; repStart "-5355"; chr10 rmsk exon 31961082 31962010 6384 - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0120"; repClass "LTR"; repEnd "954"; repFamily "ERV1"; repLeft "1"; repStart "-6251"; chr10 rmsk exon 31962094 31962164 4383 - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0120"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "648"; repStart "-23"; chr10 rmsk exon 31962470 31963114 4383 - . gene_id "HERVFRD_10p11.22b"; transcript_id "HERVFRD_10p11.22b"; locus "HERVFRD_10p11.22b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0120"; repClass "LTR"; repEnd "647"; repFamily "ERV1"; repLeft "1"; repStart "-87"; ### ERV316A3_10p11.22c ### chr10 rmsk gene 32004895 32005791 . + . gene_id "ERV316A3_10p11.22c"; transcript_id "ERV316A3_10p11.22c"; locus "ERV316A3_10p11.22c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1801"; model_cov "897"; model_pct "17.2"; chr10 rmsk exon 32004895 32005311 769 + . gene_id "ERV316A3_10p11.22c"; transcript_id "ERV316A3_10p11.22c"; locus "ERV316A3_10p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1801"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "-3148"; repStart "1680"; chr10 rmsk exon 32005352 32005791 718 + . gene_id "ERV316A3_10p11.22c"; transcript_id "ERV316A3_10p11.22c"; locus "ERV316A3_10p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1801"; repClass "LTR"; repEnd "4258"; repFamily "ERVL"; repLeft "-968"; repStart "3759"; ### HERVH_10p11.22 ### chr10 rmsk gene 32133699 32138852 . - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0803"; model_cov "5010"; model_pct "65.0"; chr10 rmsk exon 32133699 32134087 2720 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 32134088 32134646 3886 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr10 rmsk exon 32134640 32134900 1635 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chr10 rmsk exon 32134891 32136156 4221 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "3979"; repStart "-1805"; chr10 rmsk exon 32136165 32137896 10512 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "2814"; repFamily "ERV1"; repLeft "1124"; repStart "-4899"; chr10 rmsk exon 32137887 32138463 1981 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "576"; repFamily "ERV1"; repLeft "1"; repStart "-7137"; chr10 rmsk exon 32138464 32138852 2647 - . gene_id "HERVH_10p11.22"; transcript_id "HERVH_10p11.22"; locus "HERVH_10p11.22"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0803"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10p11.22d ### chr10 rmsk gene 32437173 32439055 . - . gene_id "ERV316A3_10p11.22d"; transcript_id "ERV316A3_10p11.22d"; locus "ERV316A3_10p11.22d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1802"; model_cov "1384"; model_pct "26.5"; chr10 rmsk exon 32437173 32437639 952 - . gene_id "ERV316A3_10p11.22d"; transcript_id "ERV316A3_10p11.22d"; locus "ERV316A3_10p11.22d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1802"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 32437712 32438118 1526 - . gene_id "ERV316A3_10p11.22d"; transcript_id "ERV316A3_10p11.22d"; locus "ERV316A3_10p11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1802"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "4489"; repStart "-310"; chr10 rmsk exon 32438121 32439055 3055 - . gene_id "ERV316A3_10p11.22d"; transcript_id "ERV316A3_10p11.22d"; locus "ERV316A3_10p11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1802"; repClass "LTR"; repEnd "4138"; repFamily "ERVL"; repLeft "3181"; repStart "-1088"; ### HERVL40_10p11.22 ### chr10 rmsk gene 32440286 32441789 . + . gene_id "HERVL40_10p11.22"; transcript_id "HERVL40_10p11.22"; locus "HERVL40_10p11.22"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0281"; model_cov "877"; model_pct "15.9"; chr10 rmsk exon 32440286 32440760 1396 + . gene_id "HERVL40_10p11.22"; transcript_id "HERVL40_10p11.22"; locus "HERVL40_10p11.22"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0281"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr10 rmsk exon 32440766 32441324 1165 + . gene_id "HERVL40_10p11.22"; transcript_id "HERVL40_10p11.22"; locus "HERVL40_10p11.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0281"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "-4959"; repStart "1"; chr10 rmsk exon 32441480 32441789 649 + . gene_id "HERVL40_10p11.22"; transcript_id "HERVL40_10p11.22"; locus "HERVL40_10p11.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0281"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "4353"; ### ERVLE_10p11.22b ### chr10 rmsk gene 32751007 32752580 . - . gene_id "ERVLE_10p11.22b"; transcript_id "ERVLE_10p11.22b"; locus "ERVLE_10p11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2386"; model_cov "1613"; model_pct "28.5"; chr10 rmsk exon 32751007 32752236 2215 - . gene_id "ERVLE_10p11.22b"; transcript_id "ERVLE_10p11.22b"; locus "ERVLE_10p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2386"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "3991"; repStart "-384"; chr10 rmsk exon 32752258 32752580 438 - . gene_id "ERVLE_10p11.22b"; transcript_id "ERVLE_10p11.22b"; locus "ERVLE_10p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2386"; repClass "LTR"; repEnd "4257"; repFamily "ERVL"; repLeft "3936"; repStart "-1410"; ### ERVLB4_10p11.22b ### chr10 rmsk gene 32761330 32766853 . + . gene_id "ERVLB4_10p11.22b"; transcript_id "ERVLB4_10p11.22b"; locus "ERVLB4_10p11.22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1094"; model_cov "3387"; model_pct "59.3"; chr10 rmsk exon 32761330 32761865 2633 + . gene_id "ERVLB4_10p11.22b"; transcript_id "ERVLB4_10p11.22b"; locus "ERVLB4_10p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1094"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5048"; repStart "135"; chr10 rmsk exon 32764091 32766853 14923 + . gene_id "ERVLB4_10p11.22b"; transcript_id "ERVLB4_10p11.22b"; locus "ERVLB4_10p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1094"; repClass "LTR"; repEnd "3569"; repFamily "ERVL"; repLeft "-2145"; repStart "713"; ### HERVL_10p11.22a ### chr10 rmsk gene 32797694 32803046 . - . gene_id "HERVL_10p11.22a"; transcript_id "HERVL_10p11.22a"; locus "HERVL_10p11.22a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0843"; model_cov "4825"; model_pct "85.3"; chr10 rmsk exon 32797694 32802532 36593 - . gene_id "HERVL_10p11.22a"; transcript_id "HERVL_10p11.22a"; locus "HERVL_10p11.22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0843"; repClass "LTR"; repEnd "4826"; repFamily "ERVL"; repLeft "1"; repStart "-828"; chr10 rmsk exon 32802533 32803046 2144 - . gene_id "HERVL_10p11.22a"; transcript_id "HERVL_10p11.22a"; locus "HERVL_10p11.22a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0843"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-84"; repStart "0"; ### HERVL_10p11.22b ### chr10 rmsk gene 32825222 32830177 . + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0844"; model_cov "3074"; model_pct "54.4"; chr10 rmsk exon 32825222 32825593 2071 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 32825594 32825743 1216 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "150"; repFamily "ERVL"; repLeft "-5504"; repStart "1"; chr10 rmsk exon 32825740 32826276 4188 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "977"; repFamily "ERVL"; repLeft "-4677"; repStart "436"; chr10 rmsk exon 32826340 32827559 9783 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "4521"; repFamily "ERVL"; repLeft "-1133"; repStart "3284"; chr10 rmsk exon 32828569 32829703 8926 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4507"; chr10 rmsk exon 32829704 32830177 3058 + . gene_id "HERVL_10p11.22b"; transcript_id "HERVL_10p11.22b"; locus "HERVL_10p11.22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0844"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL74_10p11.22 ### chr10 rmsk gene 32890892 32892954 . - . gene_id "HERVL74_10p11.22"; transcript_id "HERVL74_10p11.22"; locus "HERVL74_10p11.22"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0060"; model_cov "2232"; model_pct "39.3"; chr10 rmsk exon 32890892 32892348 4366 - . gene_id "HERVL74_10p11.22"; transcript_id "HERVL74_10p11.22"; locus "HERVL74_10p11.22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0060"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "1710"; repStart "-2357"; chr10 rmsk exon 32892398 32892954 3535 - . gene_id "HERVL74_10p11.22"; transcript_id "HERVL74_10p11.22"; locus "HERVL74_10p11.22"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0060"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1095"; repStart "-3976"; ### ERV316A3_10p11.22e ### chr10 rmsk gene 33580589 33586855 . - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1804"; model_cov "3537"; model_pct "67.7"; chr10 rmsk exon 33580589 33581318 1666 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "4204"; repFamily "ERVL"; repLeft "3421"; repStart "-1022"; chr10 rmsk exon 33581929 33582939 4492 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "3377"; repFamily "ERVL"; repLeft "2423"; repStart "-1849"; chr10 rmsk exon 33583246 33584055 4492 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "2422"; repFamily "ERVL"; repLeft "1581"; repStart "-2804"; chr10 rmsk exon 33584220 33584505 827 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "1135"; repFamily "ERVL"; repLeft "844"; repStart "-4091"; chr10 rmsk exon 33585319 33585579 563 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "826"; repFamily "ERVL"; repLeft "558"; repStart "-4400"; chr10 rmsk exon 33585666 33585862 581 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "243"; repStart "-4820"; chr10 rmsk exon 33586160 33586398 581 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "242"; repFamily "ERVL"; repLeft "5"; repStart "-4984"; chr10 rmsk exon 33586399 33586855 1096 - . gene_id "ERV316A3_10p11.22e"; transcript_id "ERV316A3_10p11.22e"; locus "ERV316A3_10p11.22e"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1804"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_10p11.22c ### chr10 rmsk gene 33752412 33758000 . - . gene_id "ERVLE_10p11.22c"; transcript_id "ERVLE_10p11.22c"; locus "ERVLE_10p11.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2388"; model_cov "3262"; model_pct "57.6"; chr10 rmsk exon 33752412 33752530 335 - . gene_id "ERVLE_10p11.22c"; transcript_id "ERVLE_10p11.22c"; locus "ERVLE_10p11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2388"; repClass "LTR"; repEnd "4553"; repFamily "ERVL"; repLeft "4445"; repStart "-1114"; chr10 rmsk exon 33752704 33754086 2058 - . gene_id "ERVLE_10p11.22c"; transcript_id "ERVLE_10p11.22c"; locus "ERVLE_10p11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2388"; repClass "LTR"; repEnd "4238"; repFamily "ERVL"; repLeft "2896"; repStart "-1429"; chr10 rmsk exon 33754817 33755659 2058 - . gene_id "ERVLE_10p11.22c"; transcript_id "ERVLE_10p11.22c"; locus "ERVLE_10p11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2388"; repClass "LTR"; repEnd "2895"; repFamily "ERVL"; repLeft "1964"; repStart "-2772"; chr10 rmsk exon 33757157 33758000 552 - . gene_id "ERVLE_10p11.22c"; transcript_id "ERVLE_10p11.22c"; locus "ERVLE_10p11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2388"; repClass "LTR"; repEnd "1966"; repFamily "ERVL"; repLeft "1085"; repStart "-3701"; ### HERVE_10p11.21 ### chr10 rmsk gene 34969035 34975620 . + . gene_id "HERVE_10p11.21"; transcript_id "HERVE_10p11.21"; locus "HERVE_10p11.21"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0102"; model_cov "6101"; model_pct "78.1"; chr10 rmsk exon 34969035 34969226 1324 + . gene_id "HERVE_10p11.21"; transcript_id "HERVE_10p11.21"; locus "HERVE_10p11.21"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0102"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; chr10 rmsk exon 34969227 34975145 42634 + . gene_id "HERVE_10p11.21"; transcript_id "HERVE_10p11.21"; locus "HERVE_10p11.21"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0102"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "-1791"; repStart "1"; chr10 rmsk exon 34975183 34975263 391 + . gene_id "HERVE_10p11.21"; transcript_id "HERVE_10p11.21"; locus "HERVE_10p11.21"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0102"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "7732"; chr10 rmsk exon 34975433 34975620 1398 + . gene_id "HERVE_10p11.21"; transcript_id "HERVE_10p11.21"; locus "HERVE_10p11.21"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0102"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; ### ERVLB4_10p11.21 ### chr10 rmsk gene 34999279 35001258 . + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1095"; model_cov "1295"; model_pct "22.7"; chr10 rmsk exon 34999279 34999582 1661 + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1095"; repClass "LTR"; repEnd "726"; repFamily "ERVL"; repLeft "-4988"; repStart "422"; chr10 rmsk exon 34999585 35000000 2632 + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1095"; repClass "LTR"; repEnd "5146"; repFamily "ERVL"; repLeft "-568"; repStart "4721"; chr10 rmsk exon 35000001 35000447 2652 + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1095"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-68"; repStart "5147"; chr10 rmsk exon 35000747 35000822 2652 + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1095"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5647"; chr10 rmsk exon 35000823 35001258 1844 + . gene_id "ERVLB4_10p11.21"; transcript_id "ERVLB4_10p11.21"; locus "ERVLB4_10p11.21"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1095"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-56"; repStart "1"; ### ERV316A3_10p11.21a ### chr10 rmsk gene 35223108 35224381 . + . gene_id "ERV316A3_10p11.21a"; transcript_id "ERV316A3_10p11.21a"; locus "ERV316A3_10p11.21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1805"; model_cov "649"; model_pct "12.4"; chr10 rmsk exon 35223108 35223272 528 + . gene_id "ERV316A3_10p11.21a"; transcript_id "ERV316A3_10p11.21a"; locus "ERV316A3_10p11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1805"; repClass "LTR"; repEnd "3846"; repFamily "ERVL"; repLeft "-1380"; repStart "3681"; chr10 rmsk exon 35223390 35223834 832 + . gene_id "ERV316A3_10p11.21a"; transcript_id "ERV316A3_10p11.21a"; locus "ERV316A3_10p11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1805"; repClass "LTR"; repEnd "4857"; repFamily "ERVL"; repLeft "-369"; repStart "4373"; chr10 rmsk exon 35224312 35224381 318 + . gene_id "ERV316A3_10p11.21a"; transcript_id "ERV316A3_10p11.21a"; locus "ERV316A3_10p11.21a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1805"; repClass "LTR"; repEnd "130"; repFamily "ERVL"; repLeft "-321"; repStart "58"; ### ERV316A3_10p11.21b ### chr10 rmsk gene 35273618 35277559 . - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1806"; model_cov "2981"; model_pct "57.0"; chr10 rmsk exon 35273618 35274025 3176 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "2928"; repFamily "ERVL"; repLeft "2262"; repStart "-2298"; chr10 rmsk exon 35274398 35275056 3176 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "2792"; repFamily "ERVL"; repLeft "2114"; repStart "-2434"; chr10 rmsk exon 35275366 35275481 3176 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "2113"; repFamily "ERVL"; repLeft "2002"; repStart "-3113"; chr10 rmsk exon 35275775 35276377 3176 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "2001"; repFamily "ERVL"; repLeft "1349"; repStart "-3225"; chr10 rmsk exon 35276685 35276895 609 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "1591"; repFamily "ERVL"; repLeft "1385"; repStart "-3635"; chr10 rmsk exon 35276906 35277559 1323 - . gene_id "ERV316A3_10p11.21b"; transcript_id "ERV316A3_10p11.21b"; locus "ERV316A3_10p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1806"; repClass "LTR"; repEnd "1270"; repFamily "ERVL"; repLeft "602"; repStart "-3956"; ### HERVH_10p11.21 ### chr10 rmsk gene 35401605 35408752 . - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0804"; model_cov "5741"; model_pct "74.4"; chr10 rmsk exon 35401605 35402017 3102 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr10 rmsk exon 35402019 35402572 3860 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr10 rmsk exon 35402566 35402830 1501 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr10 rmsk exon 35402831 35406174 18374 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "1658"; repStart "-2803"; chr10 rmsk exon 35406913 35408293 5465 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "1665"; repFamily "ERV1"; repLeft "1"; repStart "-6048"; chr10 rmsk exon 35408294 35408752 3651 - . gene_id "HERVH_10p11.21"; transcript_id "HERVH_10p11.21"; locus "HERVH_10p11.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0804"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR57_10p11.21 ### chr10 rmsk gene 35522654 35523343 . + . gene_id "LTR57_10p11.21"; transcript_id "LTR57_10p11.21"; locus "LTR57_10p11.21"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0112"; model_cov "951"; model_pct "17.8"; chr10 rmsk exon 35522654 35523343 388 + . gene_id "LTR57_10p11.21"; transcript_id "LTR57_10p11.21"; locus "LTR57_10p11.21"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0112"; repClass "LTR"; repEnd "2904"; repFamily "ERVL"; repLeft "-2439"; repStart "1953"; ### HERVL_10p11.21 ### chr10 rmsk gene 36473569 36476361 . + . gene_id "HERVL_10p11.21"; transcript_id "HERVL_10p11.21"; locus "HERVL_10p11.21"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0845"; model_cov "2782"; model_pct "49.2"; chr10 rmsk exon 36473569 36476361 20955 + . gene_id "HERVL_10p11.21"; transcript_id "HERVL_10p11.21"; locus "HERVL_10p11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0845"; repClass "LTR"; repEnd "3138"; repFamily "ERVL"; repLeft "-2516"; repStart "356"; ### ERV316A3_10p11.21c ### chr10 rmsk gene 36728483 36730084 . - . gene_id "ERV316A3_10p11.21c"; transcript_id "ERV316A3_10p11.21c"; locus "ERV316A3_10p11.21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1808"; model_cov "1173"; model_pct "22.4"; chr10 rmsk exon 36728483 36728844 803 - . gene_id "ERV316A3_10p11.21c"; transcript_id "ERV316A3_10p11.21c"; locus "ERV316A3_10p11.21c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1808"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "7"; repStart "-81"; chr10 rmsk exon 36729153 36729270 477 - . gene_id "ERV316A3_10p11.21c"; transcript_id "ERV316A3_10p11.21c"; locus "ERV316A3_10p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1808"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "4698"; repStart "-409"; chr10 rmsk exon 36729317 36729770 945 - . gene_id "ERV316A3_10p11.21c"; transcript_id "ERV316A3_10p11.21c"; locus "ERV316A3_10p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1808"; repClass "LTR"; repEnd "4338"; repFamily "ERVL"; repLeft "3732"; repStart "-888"; chr10 rmsk exon 36729810 36730084 2512 - . gene_id "ERV316A3_10p11.21c"; transcript_id "ERV316A3_10p11.21c"; locus "ERV316A3_10p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1808"; repClass "LTR"; repEnd "3769"; repFamily "ERVL"; repLeft "3321"; repStart "-1457"; ### ERV316A3_10p11.21d ### chr10 rmsk gene 36730376 36731555 . - . gene_id "ERV316A3_10p11.21d"; transcript_id "ERV316A3_10p11.21d"; locus "ERV316A3_10p11.21d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1809"; model_cov "931"; model_pct "17.8"; chr10 rmsk exon 36730376 36730696 2512 - . gene_id "ERV316A3_10p11.21d"; transcript_id "ERV316A3_10p11.21d"; locus "ERV316A3_10p11.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1809"; repClass "LTR"; repEnd "3808"; repFamily "ERVL"; repLeft "3463"; repStart "-1418"; chr10 rmsk exon 36731003 36731555 2512 - . gene_id "ERV316A3_10p11.21d"; transcript_id "ERV316A3_10p11.21d"; locus "ERV316A3_10p11.21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1809"; repClass "LTR"; repEnd "3462"; repFamily "ERVL"; repLeft "2876"; repStart "-1764"; ### HERV9_10p11.21 ### chr10 rmsk gene 37274421 37285722 . - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0123"; model_cov "8537"; model_pct "100.0"; chr10 rmsk exon 37274421 37275880 8883 - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0123"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr10 rmsk exon 37275881 37284069 53874 - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0123"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "17"; repStart "0"; chr10 rmsk exon 37284037 37284104 274 - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0123"; repClass "LTR"; repEnd "2389"; repFamily "ERV1"; repLeft "2329"; repStart "-6047"; chr10 rmsk exon 37284098 37284156 345 - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0123"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "1"; repStart "-8377"; chr10 rmsk exon 37284157 37285722 10119 - . gene_id "HERV9_10p11.21"; transcript_id "HERV9_10p11.21"; locus "HERV9_10p11.21"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0123"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HUERSP3_10p11.21 ### chr10 rmsk gene 37320772 37326042 . + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0126"; model_cov "3829"; model_pct "42.9"; chr10 rmsk exon 37320772 37321403 3443 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 37321404 37322828 17036 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "1477"; repFamily "ERV1"; repLeft "-7442"; repStart "1"; chr10 rmsk exon 37323132 37324995 17036 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "3353"; repFamily "ERV1"; repLeft "-5566"; repStart "1478"; chr10 rmsk exon 37325232 37325507 1852 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "3609"; repFamily "ERV1"; repLeft "-5310"; repStart "3344"; chr10 rmsk exon 37325508 37325714 1140 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "6229"; repFamily "ERV1"; repLeft "-2690"; repStart "6016"; chr10 rmsk exon 37325715 37326042 1533 + . gene_id "HUERSP3_10p11.21"; transcript_id "HUERSP3_10p11.21"; locus "HUERSP3_10p11.21"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0126"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "304"; ### ERV316A3_10p11.21e ### chr10 rmsk gene 37449302 37451140 . + . gene_id "ERV316A3_10p11.21e"; transcript_id "ERV316A3_10p11.21e"; locus "ERV316A3_10p11.21e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1810"; model_cov "963"; model_pct "18.4"; chr10 rmsk exon 37449302 37449993 1995 + . gene_id "ERV316A3_10p11.21e"; transcript_id "ERV316A3_10p11.21e"; locus "ERV316A3_10p11.21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1810"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4156"; chr10 rmsk exon 37450346 37450648 1995 + . gene_id "ERV316A3_10p11.21e"; transcript_id "ERV316A3_10p11.21e"; locus "ERV316A3_10p11.21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1810"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "-106"; repStart "4818"; chr10 rmsk exon 37450790 37451140 680 + . gene_id "ERV316A3_10p11.21e"; transcript_id "ERV316A3_10p11.21e"; locus "ERV316A3_10p11.21e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1810"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "77"; ### ERVLE_10p11.21 ### chr10 rmsk gene 37784211 37786335 . + . gene_id "ERVLE_10p11.21"; transcript_id "ERVLE_10p11.21"; locus "ERVLE_10p11.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2389"; model_cov "2230"; model_pct "39.4"; chr10 rmsk exon 37784211 37786335 1806 + . gene_id "ERVLE_10p11.21"; transcript_id "ERVLE_10p11.21"; locus "ERVLE_10p11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2389"; repClass "LTR"; repEnd "4642"; repFamily "ERVL"; repLeft "-1025"; repStart "2412"; ### ERV316A3_10p11.21f ### chr10 rmsk gene 37930138 37934250 . - . gene_id "ERV316A3_10p11.21f"; transcript_id "ERV316A3_10p11.21f"; locus "ERV316A3_10p11.21f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1811"; model_cov "1865"; model_pct "35.7"; chr10 rmsk exon 37930138 37931067 1750 - . gene_id "ERV316A3_10p11.21f"; transcript_id "ERV316A3_10p11.21f"; locus "ERV316A3_10p11.21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1811"; repClass "LTR"; repEnd "3972"; repFamily "ERVL"; repLeft "2981"; repStart "-1254"; chr10 rmsk exon 37933447 37933775 408 - . gene_id "ERV316A3_10p11.21f"; transcript_id "ERV316A3_10p11.21f"; locus "ERV316A3_10p11.21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1811"; repClass "LTR"; repEnd "2913"; repFamily "ERVL"; repLeft "2487"; repStart "-2313"; chr10 rmsk exon 37933813 37934250 1055 - . gene_id "ERV316A3_10p11.21f"; transcript_id "ERV316A3_10p11.21f"; locus "ERV316A3_10p11.21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1811"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "2082"; repStart "-2696"; ### HERVS71_10p11.21 ### chr10 rmsk gene 37934819 37943976 . + . gene_id "HERVS71_10p11.21"; transcript_id "HERVS71_10p11.21"; locus "HERVS71_10p11.21"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0029"; model_cov "8781"; model_pct "97.8"; chr10 rmsk exon 37934819 37935329 2499 + . gene_id "HERVS71_10p11.21"; transcript_id "HERVS71_10p11.21"; locus "HERVS71_10p11.21"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0029"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 37935332 37938745 14393 + . gene_id "HERVS71_10p11.21"; transcript_id "HERVS71_10p11.21"; locus "HERVS71_10p11.21"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0029"; repClass "LTR"; repEnd "3597"; repFamily "ERV1"; repLeft "-5381"; repStart "4"; chr10 rmsk exon 37938753 37943892 29521 + . gene_id "HERVS71_10p11.21"; transcript_id "HERVS71_10p11.21"; locus "HERVS71_10p11.21"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0029"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "3721"; chr10 rmsk exon 37943893 37943976 461 + . gene_id "HERVS71_10p11.21"; transcript_id "HERVS71_10p11.21"; locus "HERVS71_10p11.21"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0029"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-478"; repStart "1"; ### LTR57_10p11.1 ### chr10 rmsk gene 38229084 38229937 . - . gene_id "LTR57_10p11.1"; transcript_id "LTR57_10p11.1"; locus "LTR57_10p11.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0113"; model_cov "586"; model_pct "11.0"; chr10 rmsk exon 38229084 38229216 1513 - . gene_id "LTR57_10p11.1"; transcript_id "LTR57_10p11.1"; locus "LTR57_10p11.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0113"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "1454"; repStart "-3763"; chr10 rmsk exon 38229505 38229937 1513 - . gene_id "LTR57_10p11.1"; transcript_id "LTR57_10p11.1"; locus "LTR57_10p11.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0113"; repClass "LTR"; repEnd "1453"; repFamily "ERVL"; repLeft "993"; repStart "-3890"; ### MER4B_10p11.1 ### chr10 rmsk gene 38229938 38230139 . - . gene_id "MER4B_10p11.1"; transcript_id "MER4B_10p11.1"; locus "MER4B_10p11.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0275"; model_cov "1055"; model_pct "15.6"; chr10 rmsk exon 38229938 38230139 4210 - . gene_id "MER4B_10p11.1"; transcript_id "MER4B_10p11.1"; locus "MER4B_10p11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0275"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "1618"; repStart "-4085"; ### MER61_10p11.1 ### chr10 rmsk gene 38230526 38231180 . + . gene_id "MER61_10p11.1"; transcript_id "MER61_10p11.1"; locus "MER61_10p11.1"; category "internal"; intModel "MER61-int"; locid "MER61-int_0248"; model_cov "704"; model_pct "13.5"; chr10 rmsk exon 38230526 38231180 3839 + . gene_id "MER61_10p11.1"; transcript_id "MER61_10p11.1"; locus "MER61_10p11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0248"; repClass "LTR"; repEnd "4989"; repFamily "ERV1"; repLeft "-228"; repStart "4285"; ### ERV316A3_10p11.1a ### chr10 rmsk gene 38626800 38628116 . + . gene_id "ERV316A3_10p11.1a"; transcript_id "ERV316A3_10p11.1a"; locus "ERV316A3_10p11.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1812"; model_cov "786"; model_pct "15.0"; chr10 rmsk exon 38626800 38626952 306 + . gene_id "ERV316A3_10p11.1a"; transcript_id "ERV316A3_10p11.1a"; locus "ERV316A3_10p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1812"; repClass "LTR"; repEnd "2301"; repFamily "ERVL"; repLeft "-2925"; repStart "2145"; chr10 rmsk exon 38627106 38627580 1069 + . gene_id "ERV316A3_10p11.1a"; transcript_id "ERV316A3_10p11.1a"; locus "ERV316A3_10p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1812"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2505"; chr10 rmsk exon 38627948 38628116 1069 + . gene_id "ERV316A3_10p11.1a"; transcript_id "ERV316A3_10p11.1a"; locus "ERV316A3_10p11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1812"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2963"; ### ERV316A3_10p11.1b ### chr10 rmsk gene 38630974 38632555 . + . gene_id "ERV316A3_10p11.1b"; transcript_id "ERV316A3_10p11.1b"; locus "ERV316A3_10p11.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1813"; model_cov "1300"; model_pct "24.9"; chr10 rmsk exon 38630974 38631983 2833 + . gene_id "ERV316A3_10p11.1b"; transcript_id "ERV316A3_10p11.1b"; locus "ERV316A3_10p11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1813"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "-632"; repStart "3553"; chr10 rmsk exon 38632116 38632385 438 + . gene_id "ERV316A3_10p11.1b"; transcript_id "ERV316A3_10p11.1b"; locus "ERV316A3_10p11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1813"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4967"; chr10 rmsk exon 38632389 38632555 417 + . gene_id "ERV316A3_10p11.1b"; transcript_id "ERV316A3_10p11.1b"; locus "ERV316A3_10p11.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1813"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "-279"; repStart "-11"; ### HERVK11_10p11.1 ### chr10 rmsk gene 39042475 39051555 . + . gene_id "HERVK11_10p11.1"; transcript_id "HERVK11_10p11.1"; locus "HERVK11_10p11.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0060"; model_cov "7948"; model_pct "99.9"; chr10 rmsk exon 39042475 39042715 1218 + . gene_id "HERVK11_10p11.1"; transcript_id "HERVK11_10p11.1"; locus "HERVK11_10p11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0060"; repClass "LTR"; repEnd "339"; repFamily "ERVK"; repLeft "-927"; repStart "1"; chr10 rmsk exon 39042717 39043296 3806 + . gene_id "HERVK11_10p11.1"; transcript_id "HERVK11_10p11.1"; locus "HERVK11_10p11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0060"; repClass "LTR"; repEnd "1261"; repFamily "ERVK"; repLeft "-5"; repStart "670"; chr10 rmsk exon 39043307 39051222 56541 + . gene_id "HERVK11_10p11.1"; transcript_id "HERVK11_10p11.1"; locus "HERVK11_10p11.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0060"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5"; chr10 rmsk exon 39051223 39051555 1906 + . gene_id "HERVK11_10p11.1"; transcript_id "HERVK11_10p11.1"; locus "HERVK11_10p11.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0060"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "-835"; repStart "1"; ### HML1_10p11.1 ### chr10 rmsk gene 39080463 39083420 . - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0069"; model_cov "2460"; model_pct "40.4"; chr10 rmsk exon 39080463 39080529 371 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "334"; repFamily "ERVK"; repLeft "268"; repStart "-10"; chr10 rmsk exon 39080525 39080574 372 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "-214"; repFamily "ERVK"; repLeft "-263"; repStart "-558"; chr10 rmsk exon 39080578 39080704 616 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr10 rmsk exon 39080760 39080982 1411 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "5902"; repFamily "ERVK"; repLeft "5656"; repStart "-194"; chr10 rmsk exon 39080960 39082125 8615 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4378"; repStart "-544"; chr10 rmsk exon 39082166 39082410 1638 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "3977"; repFamily "ERVK"; repLeft "3734"; repStart "-2119"; chr10 rmsk exon 39082400 39083063 4304 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "13"; repStart "-5422"; chr10 rmsk exon 39083077 39083420 2105 - . gene_id "HML1_10p11.1"; transcript_id "HML1_10p11.1"; locus "HML1_10p11.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0069"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVKC4_10p11.1 ### chr10 rmsk gene 39107015 39112474 . + . gene_id "HERVKC4_10p11.1"; transcript_id "HERVKC4_10p11.1"; locus "HERVKC4_10p11.1"; category "oneside"; intModel "HERVKC4-int"; locid "HERVKC4-int_0012"; model_cov "4948"; model_pct "94.0"; chr10 rmsk exon 39107015 39111926 22057 + . gene_id "HERVKC4_10p11.1"; transcript_id "HERVKC4_10p11.1"; locus "HERVKC4_10p11.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0012"; repClass "LTR"; repEnd "5256"; repFamily "ERVK"; repLeft "-6"; repStart "308"; chr10 rmsk exon 39111929 39112474 3069 + . gene_id "HERVKC4_10p11.1"; transcript_id "HERVKC4_10p11.1"; locus "HERVKC4_10p11.1"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0012"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_10p11.1a ### chr10 rmsk gene 39197740 39202524 . - . gene_id "HML3_10p11.1a"; transcript_id "HML3_10p11.1a"; locus "HML3_10p11.1a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0151"; model_cov "4270"; model_pct "70.9"; chr10 rmsk exon 39197740 39198252 3276 - . gene_id "HML3_10p11.1a"; transcript_id "HML3_10p11.1a"; locus "HML3_10p11.1a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0151"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 39198253 39202524 32357 - . gene_id "HML3_10p11.1a"; transcript_id "HML3_10p11.1a"; locus "HML3_10p11.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0151"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1751"; repStart "0"; ### HERVS71_10p11.1 ### chr10 rmsk gene 39202525 39209158 . - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0031"; model_cov "5692"; model_pct "63.4"; chr10 rmsk exon 39202525 39203088 4031 - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0031"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 39203091 39203329 1147 - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0031"; repClass "LTR"; repEnd "8907"; repFamily "ERV1"; repLeft "8659"; repStart "-71"; chr10 rmsk exon 39203310 39205098 5181 - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0031"; repClass "LTR"; repEnd "6963"; repFamily "ERV1"; repLeft "5016"; repStart "-2015"; chr10 rmsk exon 39205101 39208598 10947 - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0031"; repClass "LTR"; repEnd "3501"; repFamily "ERV1"; repLeft "4"; repStart "-5477"; chr10 rmsk exon 39208601 39209158 3901 - . gene_id "HERVS71_10p11.1"; transcript_id "HERVS71_10p11.1"; locus "HERVS71_10p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0031"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_10p11.1b ### chr10 rmsk gene 39209161 39210871 . - . gene_id "HML3_10p11.1b"; transcript_id "HML3_10p11.1b"; locus "HML3_10p11.1b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0152"; model_cov "1206"; model_pct "20.0"; chr10 rmsk exon 39209161 39209788 4653 - . gene_id "HML3_10p11.1b"; transcript_id "HML3_10p11.1b"; locus "HML3_10p11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0152"; repClass "LTR"; repEnd "1752"; repFamily "ERVK"; repLeft "1125"; repStart "-4269"; chr10 rmsk exon 39209790 39210358 4017 - . gene_id "HML3_10p11.1b"; transcript_id "HML3_10p11.1b"; locus "HML3_10p11.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0152"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr10 rmsk exon 39210363 39210871 3704 - . gene_id "HML3_10p11.1b"; transcript_id "HML3_10p11.1b"; locus "HML3_10p11.1b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0152"; repClass "LTR"; repEnd "509"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### HERVL_10q11.21a ### chr10 rmsk gene 42186770 42190779 . + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0848"; model_cov "3251"; model_pct "57.5"; chr10 rmsk exon 42186770 42187210 2678 + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0848"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 42187211 42187472 1668 + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0848"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "-5391"; repStart "1"; chr10 rmsk exon 42187462 42187959 3332 + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0848"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "-3840"; repStart "1317"; chr10 rmsk exon 42187953 42190394 13618 + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0848"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3162"; chr10 rmsk exon 42190395 42190779 2631 + . gene_id "HERVL_10q11.21a"; transcript_id "HERVL_10q11.21a"; locus "HERVL_10q11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0848"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### ERV316A3_10q11.21a ### chr10 rmsk gene 42285279 42286834 . - . gene_id "ERV316A3_10q11.21a"; transcript_id "ERV316A3_10q11.21a"; locus "ERV316A3_10q11.21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1814"; model_cov "1300"; model_pct "24.9"; chr10 rmsk exon 42285279 42285418 402 - . gene_id "ERV316A3_10q11.21a"; transcript_id "ERV316A3_10q11.21a"; locus "ERV316A3_10q11.21a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1814"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "2"; repStart "-294"; chr10 rmsk exon 42285422 42285692 430 - . gene_id "ERV316A3_10q11.21a"; transcript_id "ERV316A3_10q11.21a"; locus "ERV316A3_10q11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1814"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4967"; repStart "0"; chr10 rmsk exon 42285825 42286834 2945 - . gene_id "ERV316A3_10q11.21a"; transcript_id "ERV316A3_10q11.21a"; locus "ERV316A3_10q11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1814"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "3553"; repStart "-632"; ### ERV316A3_10q11.21b ### chr10 rmsk gene 42289681 42290997 . - . gene_id "ERV316A3_10q11.21b"; transcript_id "ERV316A3_10q11.21b"; locus "ERV316A3_10q11.21b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1815"; model_cov "786"; model_pct "15.0"; chr10 rmsk exon 42289681 42289849 1086 - . gene_id "ERV316A3_10q11.21b"; transcript_id "ERV316A3_10q11.21b"; locus "ERV316A3_10q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1815"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "2963"; repStart "-2090"; chr10 rmsk exon 42290217 42290691 1086 - . gene_id "ERV316A3_10q11.21b"; transcript_id "ERV316A3_10q11.21b"; locus "ERV316A3_10q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1815"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "2505"; repStart "-2264"; chr10 rmsk exon 42290845 42290997 303 - . gene_id "ERV316A3_10q11.21b"; transcript_id "ERV316A3_10q11.21b"; locus "ERV316A3_10q11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1815"; repClass "LTR"; repEnd "2301"; repFamily "ERVL"; repLeft "2145"; repStart "-2925"; ### MER41_10q11.21 ### chr10 rmsk gene 42376380 42379774 . - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0345"; model_cov "1127"; model_pct "19.0"; chr10 rmsk exon 42376380 42376948 3702 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0345"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "55"; repStart "0"; chr10 rmsk exon 42376949 42377009 365 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "2222"; repFamily "ERV1"; repLeft "2162"; repStart "-3724"; chr10 rmsk exon 42376994 42377067 320 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "967"; repStart "-4908"; chr10 rmsk exon 42377858 42377910 350 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "972"; repFamily "ERV1"; repLeft "920"; repStart "-4974"; chr10 rmsk exon 42377912 42378553 2050 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "412"; repStart "-5166"; chr10 rmsk exon 42378530 42378962 2818 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "199"; repStart "-5317"; chr10 rmsk exon 42379014 42379154 868 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0345"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "1"; repStart "-5799"; chr10 rmsk exon 42379155 42379774 4001 - . gene_id "MER41_10q11.21"; transcript_id "MER41_10q11.21"; locus "MER41_10q11.21"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0345"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFH19_10q11.21 ### chr10 rmsk gene 42384057 42393513 . - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; category "prototype"; intModel "HERVFH19-int"; locid "HERVFH19-int_0028"; model_cov "6960"; model_pct "90.2"; chr10 rmsk exon 42384057 42384561 2641 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 42384907 42385886 23285 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "6965"; repFamily "ERV1"; repLeft "5994"; repStart "-754"; chr10 rmsk exon 42386199 42387398 23285 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "5993"; repFamily "ERV1"; repLeft "4752"; repStart "-1726"; chr10 rmsk exon 42387707 42388331 23285 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "4751"; repFamily "ERV1"; repLeft "4114"; repStart "-2968"; chr10 rmsk exon 42388645 42389902 31961 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "4113"; repFamily "ERV1"; repLeft "2855"; repStart "-3606"; chr10 rmsk exon 42390158 42393013 31961 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "2854"; repFamily "ERV1"; repLeft "1"; repStart "-4865"; chr10 rmsk exon 42393014 42393513 2550 - . gene_id "HERVFH19_10q11.21"; transcript_id "HERVFH19_10q11.21"; locus "HERVFH19_10q11.21"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0028"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### MER61_10q11.21 ### chr10 rmsk gene 42395784 42396996 . - . gene_id "MER61_10q11.21"; transcript_id "MER61_10q11.21"; locus "MER61_10q11.21"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0250"; model_cov "878"; model_pct "16.8"; chr10 rmsk exon 42395784 42396106 1632 - . gene_id "MER61_10q11.21"; transcript_id "MER61_10q11.21"; locus "MER61_10q11.21"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0250"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 42396107 42396418 1619 - . gene_id "MER61_10q11.21"; transcript_id "MER61_10q11.21"; locus "MER61_10q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0250"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4869"; repStart "0"; chr10 rmsk exon 42396460 42396996 3304 - . gene_id "MER61_10q11.21"; transcript_id "MER61_10q11.21"; locus "MER61_10q11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0250"; repClass "LTR"; repEnd "4815"; repFamily "ERV1"; repLeft "4285"; repStart "-402"; ### MER4B_10q11.21 ### chr10 rmsk gene 42397375 42398000 . + . gene_id "MER4B_10q11.21"; transcript_id "MER4B_10q11.21"; locus "MER4B_10q11.21"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0276"; model_cov "1089"; model_pct "16.1"; chr10 rmsk exon 42397375 42398000 4082 + . gene_id "MER4B_10q11.21"; transcript_id "MER4B_10q11.21"; locus "MER4B_10q11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0276"; repClass "LTR"; repEnd "2673"; repFamily "ERV1"; repLeft "-4085"; repStart "1584"; ### HML3_10q11.21a ### chr10 rmsk gene 42486524 42494602 . + . gene_id "HML3_10q11.21a"; transcript_id "HML3_10q11.21a"; locus "HML3_10q11.21a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0153"; model_cov "7368"; model_pct "100.0"; chr10 rmsk exon 42486524 42487016 3976 + . gene_id "HML3_10q11.21a"; transcript_id "HML3_10q11.21a"; locus "HML3_10q11.21a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0153"; repClass "LTR"; repEnd "495"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr10 rmsk exon 42487021 42494108 35955 + . gene_id "HML3_10q11.21a"; transcript_id "HML3_10q11.21a"; locus "HML3_10q11.21a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0153"; repClass "LTR"; repEnd "5956"; repFamily "ERVK"; repLeft "-65"; repStart "-1412"; chr10 rmsk exon 42494109 42494602 3803 + . gene_id "HML3_10q11.21a"; transcript_id "HML3_10q11.21a"; locus "HML3_10q11.21a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0153"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_10q11.21b ### chr10 rmsk gene 42494899 42502222 . + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0154"; model_cov "6016"; model_pct "99.9"; chr10 rmsk exon 42494899 42495411 4636 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr10 rmsk exon 42495412 42497101 34711 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "1691"; repFamily "ERVK"; repLeft "-4330"; repStart "1"; chr10 rmsk exon 42497394 42498227 34711 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-3476"; repStart "1692"; chr10 rmsk exon 42498259 42500000 34711 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "4295"; repFamily "ERVK"; repLeft "-1726"; repStart "2546"; chr10 rmsk exon 42500001 42501709 12646 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4297"; chr10 rmsk exon 42501710 42502222 4141 + . gene_id "HML3_10q11.21b"; transcript_id "HML3_10q11.21b"; locus "HML3_10q11.21b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0154"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_10q11.21c ### chr10 rmsk gene 42506072 42510738 . - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0155"; model_cov "3790"; model_pct "62.9"; chr10 rmsk exon 42506072 42506586 3986 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 42506587 42508036 10482 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4582"; repStart "0"; chr10 rmsk exon 42508023 42508244 1496 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr10 rmsk exon 42508245 42509662 10213 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1280"; repStart "-3223"; chr10 rmsk exon 42509663 42510225 4070 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr10 rmsk exon 42510226 42510738 4291 - . gene_id "HML3_10q11.21c"; transcript_id "HML3_10q11.21c"; locus "HML3_10q11.21c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0155"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_10q11.21 ### chr10 rmsk gene 42844649 42849633 . - . gene_id "ERVLB4_10q11.21"; transcript_id "ERVLB4_10q11.21"; locus "ERVLB4_10q11.21"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1097"; model_cov "2919"; model_pct "51.1"; chr10 rmsk exon 42844649 42846670 12313 - . gene_id "ERVLB4_10q11.21"; transcript_id "ERVLB4_10q11.21"; locus "ERVLB4_10q11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1097"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "3288"; repStart "-352"; chr10 rmsk exon 42848343 42848660 12313 - . gene_id "ERVLB4_10q11.21"; transcript_id "ERVLB4_10q11.21"; locus "ERVLB4_10q11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1097"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "2954"; repStart "-2427"; chr10 rmsk exon 42848644 42849140 2948 - . gene_id "ERVLB4_10q11.21"; transcript_id "ERVLB4_10q11.21"; locus "ERVLB4_10q11.21"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1097"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-5201"; chr10 rmsk exon 42849141 42849633 2505 - . gene_id "ERVLB4_10q11.21"; transcript_id "ERVLB4_10q11.21"; locus "ERVLB4_10q11.21"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1097"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML1_10q11.21 ### chr10 rmsk gene 43299360 43300924 . - . gene_id "HML1_10q11.21"; transcript_id "HML1_10q11.21"; locus "HML1_10q11.21"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0070"; model_cov "827"; model_pct "13.6"; chr10 rmsk exon 43299360 43299414 452 - . gene_id "HML1_10q11.21"; transcript_id "HML1_10q11.21"; locus "HML1_10q11.21"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0070"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "5960"; repStart "-82"; chr10 rmsk exon 43299477 43300924 4674 - . gene_id "HML1_10q11.21"; transcript_id "HML1_10q11.21"; locus "HML1_10q11.21"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0070"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5124"; repStart "-199"; ### HML5_10q11.21 ### chr10 rmsk gene 43300927 43306616 . - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0077"; model_cov "4149"; model_pct "60.7"; chr10 rmsk exon 43300927 43301198 1894 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "282"; repFamily "ERVK"; repLeft "1"; repStart "-210"; chr10 rmsk exon 43301199 43304371 22214 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "3656"; repStart "0"; chr10 rmsk exon 43304373 43304427 346 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "2490"; repStart "-4293"; chr10 rmsk exon 43304417 43304496 524 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "2825"; repStart "-3930"; chr10 rmsk exon 43304494 43304631 701 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "2471"; repFamily "ERVK"; repLeft "2327"; repStart "-4366"; chr10 rmsk exon 43305111 43305466 4093 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "694"; repFamily "ERVK"; repLeft "347"; repStart "-6143"; chr10 rmsk exon 43305778 43306121 4093 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "346"; repFamily "ERVK"; repLeft "5"; repStart "-6491"; chr10 rmsk exon 43306125 43306616 3185 - . gene_id "HML5_10q11.21"; transcript_id "HML5_10q11.21"; locus "HML5_10q11.21"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0077"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_10q11.21c ### chr10 rmsk gene 43325844 43326859 . - . gene_id "ERV316A3_10q11.21c"; transcript_id "ERV316A3_10q11.21c"; locus "ERV316A3_10q11.21c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1816"; model_cov "1023"; model_pct "19.6"; chr10 rmsk exon 43325844 43326859 1555 - . gene_id "ERV316A3_10q11.21c"; transcript_id "ERV316A3_10q11.21c"; locus "ERV316A3_10q11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1816"; repClass "LTR"; repEnd "3699"; repFamily "ERVL"; repLeft "2676"; repStart "-1527"; ### HERVL74_10q11.21 ### chr10 rmsk gene 43507837 43509420 . + . gene_id "HERVL74_10q11.21"; transcript_id "HERVL74_10q11.21"; locus "HERVL74_10q11.21"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0061"; model_cov "988"; model_pct "17.4"; chr10 rmsk exon 43507837 43508293 1975 + . gene_id "HERVL74_10q11.21"; transcript_id "HERVL74_10q11.21"; locus "HERVL74_10q11.21"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0061"; repClass "LTR"; repEnd "2913"; repFamily "ERVL"; repLeft "-2772"; repStart "2452"; chr10 rmsk exon 43508301 43508526 1994 + . gene_id "HERVL74_10q11.21"; transcript_id "HERVL74_10q11.21"; locus "HERVL74_10q11.21"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0061"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "-4124"; repStart "1321"; chr10 rmsk exon 43508868 43508924 1994 + . gene_id "HERVL74_10q11.21"; transcript_id "HERVL74_10q11.21"; locus "HERVL74_10q11.21"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0061"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "-4078"; repStart "1562"; chr10 rmsk exon 43509210 43509420 1994 + . gene_id "HERVL74_10q11.21"; transcript_id "HERVL74_10q11.21"; locus "HERVL74_10q11.21"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0061"; repClass "LTR"; repEnd "1850"; repFamily "ERVL"; repLeft "-3835"; repStart "1608"; ### HERVL_10q11.21b ### chr10 rmsk gene 43509421 43516879 . - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0849"; model_cov "5650"; model_pct "99.9"; chr10 rmsk exon 43509421 43509879 3089 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 43509880 43510544 44675 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4993"; repStart "0"; chr10 rmsk exon 43510846 43514128 44675 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "4992"; repFamily "ERVL"; repLeft "1731"; repStart "-662"; chr10 rmsk exon 43514435 43515779 44675 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "350"; repStart "-3924"; chr10 rmsk exon 43516080 43516426 44675 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "1"; repStart "-5305"; chr10 rmsk exon 43516427 43516879 3027 - . gene_id "HERVL_10q11.21b"; transcript_id "HERVL_10q11.21b"; locus "HERVL_10q11.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0849"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERV3_10q11.21a ### chr10 rmsk gene 43583451 43586830 . - . gene_id "HERV3_10q11.21a"; transcript_id "HERV3_10q11.21a"; locus "HERV3_10q11.21a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0039"; model_cov "3322"; model_pct "39.4"; chr10 rmsk exon 43583451 43583550 733 - . gene_id "HERV3_10q11.21a"; transcript_id "HERV3_10q11.21a"; locus "HERV3_10q11.21a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0039"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "459"; repStart "0"; chr10 rmsk exon 43583555 43583757 9862 - . gene_id "HERV3_10q11.21a"; transcript_id "HERV3_10q11.21a"; locus "HERV3_10q11.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0039"; repClass "LTR"; repEnd "7491"; repFamily "ERV1"; repLeft "7298"; repStart "-935"; chr10 rmsk exon 43584045 43586830 11658 - . gene_id "HERV3_10q11.21a"; transcript_id "HERV3_10q11.21a"; locus "HERV3_10q11.21a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0039"; repClass "LTR"; repEnd "7297"; repFamily "ERV1"; repLeft "4168"; repStart "-1129"; ### HML3_10q11.21d ### chr10 rmsk gene 43586832 43591985 . + . gene_id "HML3_10q11.21d"; transcript_id "HML3_10q11.21d"; locus "HML3_10q11.21d"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0156"; model_cov "4532"; model_pct "75.3"; chr10 rmsk exon 43586832 43586942 596 + . gene_id "HML3_10q11.21d"; transcript_id "HML3_10q11.21d"; locus "HML3_10q11.21d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0156"; repClass "LTR"; repEnd "143"; repFamily "ERVK"; repLeft "-369"; repStart "30"; chr10 rmsk exon 43586945 43591470 36938 + . gene_id "HML3_10q11.21d"; transcript_id "HML3_10q11.21d"; locus "HML3_10q11.21d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0156"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "-3"; repStart "1486"; chr10 rmsk exon 43591476 43591985 3820 + . gene_id "HML3_10q11.21d"; transcript_id "HML3_10q11.21d"; locus "HML3_10q11.21d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0156"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV3_10q11.21b ### chr10 rmsk gene 43591986 43597077 . - . gene_id "HERV3_10q11.21b"; transcript_id "HERV3_10q11.21b"; locus "HERV3_10q11.21b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0040"; model_cov "4473"; model_pct "53.1"; chr10 rmsk exon 43591986 43596522 24435 - . gene_id "HERV3_10q11.21b"; transcript_id "HERV3_10q11.21b"; locus "HERV3_10q11.21b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0040"; repClass "LTR"; repEnd "4475"; repFamily "ERV1"; repLeft "2"; repStart "-3951"; chr10 rmsk exon 43596523 43597077 1830 - . gene_id "HERV3_10q11.21b"; transcript_id "HERV3_10q11.21b"; locus "HERV3_10q11.21b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0040"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_10q11.21 ### chr10 rmsk gene 43898266 43899656 . - . gene_id "ERVLE_10q11.21"; transcript_id "ERVLE_10q11.21"; locus "ERVLE_10q11.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2391"; model_cov "665"; model_pct "11.7"; chr10 rmsk exon 43898266 43898649 550 - . gene_id "ERVLE_10q11.21"; transcript_id "ERVLE_10q11.21"; locus "ERVLE_10q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2391"; repClass "LTR"; repEnd "5183"; repFamily "ERVL"; repLeft "4802"; repStart "-484"; chr10 rmsk exon 43899382 43899656 694 - . gene_id "ERVLE_10q11.21"; transcript_id "ERVLE_10q11.21"; locus "ERVLE_10q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2391"; repClass "LTR"; repEnd "3077"; repFamily "ERVL"; repLeft "2793"; repStart "-2590"; ### LTR19_10q11.21 ### chr10 rmsk gene 45274512 45278972 . - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0032"; model_cov "4939"; model_pct "88.4"; chr10 rmsk exon 45274512 45274613 792 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "384"; repStart "0"; chr10 rmsk exon 45274595 45274822 1458 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "239"; repFamily "ERV1"; repLeft "1"; repStart "-247"; chr10 rmsk exon 45274824 45275551 5567 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "5585"; repFamily "ERV1"; repLeft "4824"; repStart "-1"; chr10 rmsk exon 45275551 45275641 6759 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "4533"; repStart "-967"; chr10 rmsk exon 45275932 45276700 6759 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "4532"; repFamily "ERV1"; repLeft "3766"; repStart "-1054"; chr10 rmsk exon 45277232 45278972 11601 - . gene_id "LTR19_10q11.21"; transcript_id "LTR19_10q11.21"; locus "LTR19_10q11.21"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0032"; repClass "LTR"; repEnd "4116"; repFamily "ERV1"; repLeft "790"; repStart "-1470"; ### HML6_10q11.21 ### chr10 rmsk gene 45278976 45286905 . + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0052"; model_cov "7325"; model_pct "100.0"; chr10 rmsk exon 45278976 45279311 2368 + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0052"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "95"; chr10 rmsk exon 45279313 45280822 6422 + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0052"; repClass "LTR"; repEnd "1546"; repFamily "ERVK"; repLeft "-5656"; repStart "1"; chr10 rmsk exon 45280819 45280950 752 + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0052"; repClass "LTR"; repEnd "3377"; repFamily "ERVK"; repLeft "-3825"; repStart "3245"; chr10 rmsk exon 45280941 45286457 25843 + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0052"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "1552"; chr10 rmsk exon 45286460 45286905 3251 + . gene_id "HML6_10q11.21"; transcript_id "HML6_10q11.21"; locus "HML6_10q11.21"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0052"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_10q11.21c ### chr10 rmsk gene 45336528 45341477 . + . gene_id "HERVL_10q11.21c"; transcript_id "HERVL_10q11.21c"; locus "HERVL_10q11.21c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0850"; model_cov "4521"; model_pct "80.0"; chr10 rmsk exon 45336528 45336967 3378 + . gene_id "HERVL_10q11.21c"; transcript_id "HERVL_10q11.21c"; locus "HERVL_10q11.21c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0850"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr10 rmsk exon 45336971 45338269 32828 + . gene_id "HERVL_10q11.21c"; transcript_id "HERVL_10q11.21c"; locus "HERVL_10q11.21c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0850"; repClass "LTR"; repEnd "1337"; repFamily "ERVL"; repLeft "-4317"; repStart "1"; chr10 rmsk exon 45338385 45341477 32828 + . gene_id "HERVL_10q11.21c"; transcript_id "HERVL_10q11.21c"; locus "HERVL_10q11.21c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0850"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "-1131"; repStart "1338"; ### HERVH_10q11.22 ### chr10 rmsk gene 45571174 45576085 . + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0805"; model_cov "4106"; model_pct "53.2"; chr10 rmsk exon 45571174 45571568 2602 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 45571571 45574605 11771 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "1"; chr10 rmsk exon 45574603 45574835 1407 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3504"; chr10 rmsk exon 45574857 45575156 1739 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "4288"; repFamily "ERV1"; repLeft "-3425"; repStart "3995"; chr10 rmsk exon 45575157 45575406 1249 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "4470"; repFamily "ERV1"; repLeft "-3243"; repStart "4221"; chr10 rmsk exon 45575378 45575701 1578 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7365"; chr10 rmsk exon 45575702 45576085 2399 + . gene_id "HERVH_10q11.22"; transcript_id "HERVH_10q11.22"; locus "HERVH_10q11.22"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0805"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_10q11.22a ### chr10 rmsk gene 46137666 46140632 . - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0485"; model_cov "1895"; model_pct "28.7"; chr10 rmsk exon 46137666 46137709 4481 - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0485"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "1752"; repStart "-4804"; chr10 rmsk exon 46138014 46138626 4481 - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0485"; repClass "LTR"; repEnd "1751"; repFamily "ERV1"; repLeft "1113"; repStart "-4847"; chr10 rmsk exon 46138682 46139375 4481 - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0485"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "263"; repStart "-5486"; chr10 rmsk exon 46139834 46140183 2373 - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0485"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "1"; repStart "-6231"; chr10 rmsk exon 46140187 46140632 3151 - . gene_id "MER4_10q11.22a"; transcript_id "MER4_10q11.22a"; locus "MER4_10q11.22a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0485"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERVL_10q11.22a ### chr10 rmsk gene 46157064 46158485 . - . gene_id "ERVL_10q11.22a"; transcript_id "ERVL_10q11.22a"; locus "ERVL_10q11.22a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0282"; model_cov "970"; model_pct "16.8"; chr10 rmsk exon 46157064 46157556 1983 - . gene_id "ERVL_10q11.22a"; transcript_id "ERVL_10q11.22a"; locus "ERVL_10q11.22a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0282"; repClass "LTR"; repEnd "536"; repFamily "ERVL"; repLeft "3"; repStart "-20"; chr10 rmsk exon 46157557 46157848 1496 - . gene_id "ERVL_10q11.22a"; transcript_id "ERVL_10q11.22a"; locus "ERVL_10q11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0282"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5464"; repStart "0"; chr10 rmsk exon 46157828 46158485 3345 - . gene_id "ERVL_10q11.22a"; transcript_id "ERVL_10q11.22a"; locus "ERVL_10q11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0282"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "4201"; repStart "-879"; ### MER4_10q11.22b ### chr10 rmsk gene 46208910 46211877 . + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0486"; model_cov "1894"; model_pct "28.7"; chr10 rmsk exon 46208910 46209354 3126 + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0486"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr10 rmsk exon 46209358 46209705 2361 + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0486"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "-6231"; repStart "1"; chr10 rmsk exon 46210164 46210856 4525 + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0486"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "263"; chr10 rmsk exon 46210916 46211528 4525 + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0486"; repClass "LTR"; repEnd "1750"; repFamily "ERV1"; repLeft "-4848"; repStart "1112"; chr10 rmsk exon 46211834 46211877 4525 + . gene_id "MER4_10q11.22b"; transcript_id "MER4_10q11.22b"; locus "MER4_10q11.22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0486"; repClass "LTR"; repEnd "1793"; repFamily "ERV1"; repLeft "-4805"; repStart "1751"; ### MER101_10q11.22a ### chr10 rmsk gene 46258213 46262072 . + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0256"; model_cov "2679"; model_pct "40.4"; chr10 rmsk exon 46258213 46258504 1468 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "-3877"; repStart "2473"; chr10 rmsk exon 46258702 46259718 4443 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "3780"; repFamily "ERV1"; repLeft "-2859"; repStart "2749"; chr10 rmsk exon 46259718 46259971 782 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "3926"; repFamily "ERV1"; repLeft "-2713"; repStart "3655"; chr10 rmsk exon 46259961 46260157 1694 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "5646"; repFamily "ERV1"; repLeft "-993"; repStart "5441"; chr10 rmsk exon 46260436 46260676 1694 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "5897"; repFamily "ERV1"; repLeft "-742"; repStart "5647"; chr10 rmsk exon 46260680 46260854 1908 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "6191"; repFamily "ERV1"; repLeft "-448"; repStart "6005"; chr10 rmsk exon 46261215 46261626 1908 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0256"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6192"; chr10 rmsk exon 46261628 46262072 1946 + . gene_id "MER101_10q11.22a"; transcript_id "MER101_10q11.22a"; locus "MER101_10q11.22a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0256"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_10q11.22a ### chr10 rmsk gene 46471430 46471996 . + . gene_id "ERVLE_10q11.22a"; transcript_id "ERVLE_10q11.22a"; locus "ERVLE_10q11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2392"; model_cov "571"; model_pct "10.1"; chr10 rmsk exon 46471430 46471996 1736 + . gene_id "ERVLE_10q11.22a"; transcript_id "ERVLE_10q11.22a"; locus "ERVLE_10q11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2392"; repClass "LTR"; repEnd "2737"; repFamily "ERVL"; repLeft "-2930"; repStart "2166"; ### MER101_10q11.22b ### chr10 rmsk gene 46483419 46484867 . + . gene_id "MER101_10q11.22b"; transcript_id "MER101_10q11.22b"; locus "MER101_10q11.22b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0257"; model_cov "2051"; model_pct "30.9"; chr10 rmsk exon 46483419 46483466 260 + . gene_id "MER101_10q11.22b"; transcript_id "MER101_10q11.22b"; locus "MER101_10q11.22b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0257"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4282"; repStart "2310"; chr10 rmsk exon 46483516 46484867 4905 + . gene_id "MER101_10q11.22b"; transcript_id "MER101_10q11.22b"; locus "MER101_10q11.22b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0257"; repClass "LTR"; repEnd "5074"; repFamily "ERV1"; repLeft "-1565"; repStart "3070"; ### MER101_10q11.22c ### chr10 rmsk gene 46485290 46486500 . + . gene_id "MER101_10q11.22c"; transcript_id "MER101_10q11.22c"; locus "MER101_10q11.22c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0258"; model_cov "1273"; model_pct "19.2"; chr10 rmsk exon 46485290 46485539 2381 + . gene_id "MER101_10q11.22c"; transcript_id "MER101_10q11.22c"; locus "MER101_10q11.22c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0258"; repClass "LTR"; repEnd "4216"; repFamily "ERV1"; repLeft "-2423"; repStart "3984"; chr10 rmsk exon 46485868 46486448 2381 + . gene_id "MER101_10q11.22c"; transcript_id "MER101_10q11.22c"; locus "MER101_10q11.22c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0258"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3612"; chr10 rmsk exon 46486449 46486500 281 + . gene_id "MER101_10q11.22c"; transcript_id "MER101_10q11.22c"; locus "MER101_10q11.22c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0258"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "-3"; repStart "6585"; ### MER4_10q11.22c ### chr10 rmsk gene 46844156 46847115 . - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0487"; model_cov "1895"; model_pct "28.7"; chr10 rmsk exon 46844156 46844199 4953 - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0487"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "1752"; repStart "-4804"; chr10 rmsk exon 46844502 46845114 4953 - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0487"; repClass "LTR"; repEnd "1751"; repFamily "ERV1"; repLeft "1113"; repStart "-4847"; chr10 rmsk exon 46845168 46845860 4953 - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0487"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "263"; repStart "-5486"; chr10 rmsk exon 46846319 46846666 2564 - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0487"; repClass "LTR"; repEnd "367"; repFamily "ERV1"; repLeft "1"; repStart "-6231"; chr10 rmsk exon 46846670 46847115 3216 - . gene_id "MER4_10q11.22c"; transcript_id "MER4_10q11.22c"; locus "MER4_10q11.22c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0487"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERVL_10q11.22b ### chr10 rmsk gene 46863173 46864574 . - . gene_id "ERVL_10q11.22b"; transcript_id "ERVL_10q11.22b"; locus "ERVL_10q11.22b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0283"; model_cov "970"; model_pct "16.8"; chr10 rmsk exon 46863173 46863645 2198 - . gene_id "ERVL_10q11.22b"; transcript_id "ERVL_10q11.22b"; locus "ERVL_10q11.22b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0283"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "1"; repStart "-54"; chr10 rmsk exon 46863646 46863937 1593 - . gene_id "ERVL_10q11.22b"; transcript_id "ERVL_10q11.22b"; locus "ERVL_10q11.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0283"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5464"; repStart "0"; chr10 rmsk exon 46863917 46864574 3614 - . gene_id "ERVL_10q11.22b"; transcript_id "ERVL_10q11.22b"; locus "ERVL_10q11.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0283"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "4201"; repStart "-879"; ### ERVLE_10q11.22b ### chr10 rmsk gene 46952098 46952980 . - . gene_id "ERVLE_10q11.22b"; transcript_id "ERVLE_10q11.22b"; locus "ERVLE_10q11.22b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2393"; model_cov "692"; model_pct "12.2"; chr10 rmsk exon 46952098 46952251 672 - . gene_id "ERVLE_10q11.22b"; transcript_id "ERVLE_10q11.22b"; locus "ERVLE_10q11.22b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2393"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "1"; repStart "-503"; chr10 rmsk exon 46952252 46952394 486 - . gene_id "ERVLE_10q11.22b"; transcript_id "ERVLE_10q11.22b"; locus "ERVLE_10q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2393"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5518"; repStart "-1"; chr10 rmsk exon 46952463 46952980 1950 - . gene_id "ERVLE_10q11.22b"; transcript_id "ERVLE_10q11.22b"; locus "ERVLE_10q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2393"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "4810"; repStart "-313"; ### ERVLB4_10q11.22a ### chr10 rmsk gene 46976966 46982057 . + . gene_id "ERVLB4_10q11.22a"; transcript_id "ERVLB4_10q11.22a"; locus "ERVLB4_10q11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1101"; model_cov "4853"; model_pct "84.9"; chr10 rmsk exon 46976966 46977379 2309 + . gene_id "ERVLB4_10q11.22a"; transcript_id "ERVLB4_10q11.22a"; locus "ERVLB4_10q11.22a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1101"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-4"; repStart "3"; chr10 rmsk exon 46977386 46982057 23985 + . gene_id "ERVLB4_10q11.22a"; transcript_id "ERVLB4_10q11.22a"; locus "ERVLB4_10q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1101"; repClass "LTR"; repEnd "4858"; repFamily "ERVL"; repLeft "-856"; repStart "5"; ### ERV316A3_10q11.22a ### chr10 rmsk gene 47288922 47291726 . - . gene_id "ERV316A3_10q11.22a"; transcript_id "ERV316A3_10q11.22a"; locus "ERV316A3_10q11.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1818"; model_cov "2164"; model_pct "41.4"; chr10 rmsk exon 47288922 47289352 1071 - . gene_id "ERV316A3_10q11.22a"; transcript_id "ERV316A3_10q11.22a"; locus "ERV316A3_10q11.22a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1818"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "1"; repStart "-12"; chr10 rmsk exon 47289407 47289635 588 - . gene_id "ERV316A3_10q11.22a"; transcript_id "ERV316A3_10q11.22a"; locus "ERV316A3_10q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1818"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4945"; repStart "-50"; chr10 rmsk exon 47289772 47291524 3736 - . gene_id "ERV316A3_10q11.22a"; transcript_id "ERV316A3_10q11.22a"; locus "ERV316A3_10q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1818"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "2967"; repStart "-455"; chr10 rmsk exon 47291608 47291726 369 - . gene_id "ERV316A3_10q11.22a"; transcript_id "ERV316A3_10q11.22a"; locus "ERV316A3_10q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1818"; repClass "LTR"; repEnd "2882"; repFamily "ERVL"; repLeft "2753"; repStart "-2344"; ### ERV316A3_10q11.22b ### chr10 rmsk gene 47292217 47295677 . - . gene_id "ERV316A3_10q11.22b"; transcript_id "ERV316A3_10q11.22b"; locus "ERV316A3_10q11.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1819"; model_cov "2491"; model_pct "47.7"; chr10 rmsk exon 47292217 47294169 3214 - . gene_id "ERV316A3_10q11.22b"; transcript_id "ERV316A3_10q11.22b"; locus "ERV316A3_10q11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1819"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "1025"; repStart "-2161"; chr10 rmsk exon 47294660 47294754 2500 - . gene_id "ERV316A3_10q11.22b"; transcript_id "ERV316A3_10q11.22b"; locus "ERV316A3_10q11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1819"; repClass "LTR"; repEnd "794"; repFamily "ERVL"; repLeft "703"; repStart "-4432"; chr10 rmsk exon 47294793 47295124 577 - . gene_id "ERV316A3_10q11.22b"; transcript_id "ERV316A3_10q11.22b"; locus "ERV316A3_10q11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1819"; repClass "LTR"; repEnd "618"; repFamily "ERVL"; repLeft "258"; repStart "-4608"; chr10 rmsk exon 47295325 47295677 425 - . gene_id "ERV316A3_10q11.22b"; transcript_id "ERV316A3_10q11.22b"; locus "ERV316A3_10q11.22b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1819"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "17"; repStart "0"; ### MER101_10q11.22d ### chr10 rmsk gene 47898179 47901255 . - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0259"; model_cov "2473"; model_pct "37.2"; chr10 rmsk exon 47898179 47898230 281 - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0259"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "6585"; repStart "-3"; chr10 rmsk exon 47898231 47898811 2375 - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0259"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3612"; repStart "-2037"; chr10 rmsk exon 47899137 47899386 2375 - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0259"; repClass "LTR"; repEnd "4216"; repFamily "ERV1"; repLeft "3985"; repStart "-2423"; chr10 rmsk exon 47899801 47901158 4992 - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0259"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "2762"; repStart "-2723"; chr10 rmsk exon 47901208 47901255 260 - . gene_id "MER101_10q11.22d"; transcript_id "MER101_10q11.22d"; locus "MER101_10q11.22d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0259"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "2310"; repStart "-4282"; ### ERVLE_10q11.22c ### chr10 rmsk gene 47912664 47913230 . - . gene_id "ERVLE_10q11.22c"; transcript_id "ERVLE_10q11.22c"; locus "ERVLE_10q11.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2394"; model_cov "571"; model_pct "10.1"; chr10 rmsk exon 47912664 47913230 1736 - . gene_id "ERVLE_10q11.22c"; transcript_id "ERVLE_10q11.22c"; locus "ERVLE_10q11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2394"; repClass "LTR"; repEnd "2737"; repFamily "ERVL"; repLeft "2166"; repStart "-2930"; ### ERVLB4_10q11.22b ### chr10 rmsk gene 48069799 48074884 . - . gene_id "ERVLB4_10q11.22b"; transcript_id "ERVLB4_10q11.22b"; locus "ERVLB4_10q11.22b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1103"; model_cov "4853"; model_pct "84.9"; chr10 rmsk exon 48069799 48074464 23923 - . gene_id "ERVLB4_10q11.22b"; transcript_id "ERVLB4_10q11.22b"; locus "ERVLB4_10q11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1103"; repClass "LTR"; repEnd "4858"; repFamily "ERVL"; repLeft "5"; repStart "-856"; chr10 rmsk exon 48074471 48074884 2275 - . gene_id "ERVLB4_10q11.22b"; transcript_id "ERVLB4_10q11.22b"; locus "ERVLB4_10q11.22b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1103"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "3"; repStart "-4"; ### ERVLE_10q11.22d ### chr10 rmsk gene 48098835 48099717 . + . gene_id "ERVLE_10q11.22d"; transcript_id "ERVLE_10q11.22d"; locus "ERVLE_10q11.22d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2395"; model_cov "692"; model_pct "12.2"; chr10 rmsk exon 48098835 48099352 1972 + . gene_id "ERVLE_10q11.22d"; transcript_id "ERVLE_10q11.22d"; locus "ERVLE_10q11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2395"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "-313"; repStart "4810"; chr10 rmsk exon 48099421 48099563 479 + . gene_id "ERVLE_10q11.22d"; transcript_id "ERVLE_10q11.22d"; locus "ERVLE_10q11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2395"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5518"; chr10 rmsk exon 48099564 48099717 672 + . gene_id "ERVLE_10q11.22d"; transcript_id "ERVLE_10q11.22d"; locus "ERVLE_10q11.22d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2395"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "-503"; repStart "1"; ### MER34B_10q11.22 ### chr10 rmsk gene 48226479 48231674 . + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; category "prototype"; intModel "MER34B-int"; locid "MER34B-int_0191"; model_cov "3572"; model_pct "66.7"; chr10 rmsk exon 48226479 48226936 834 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "27"; chr10 rmsk exon 48227214 48227478 592 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "-403"; repFamily "ERV1"; repLeft "-5759"; repStart "-677"; chr10 rmsk exon 48227512 48227689 453 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "-4681"; repStart "498"; chr10 rmsk exon 48227671 48227761 330 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "-1618"; repFamily "ERV1"; repLeft "-6974"; repStart "-1706"; chr10 rmsk exon 48227745 48230917 4391 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "4086"; repFamily "ERV1"; repLeft "-1270"; repStart "1053"; chr10 rmsk exon 48231197 48231674 825 + . gene_id "MER34B_10q11.22"; transcript_id "MER34B_10q11.22"; locus "MER34B_10q11.22"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0191"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "70"; ### ERVLB4_10q11.22c ### chr10 rmsk gene 48282094 48283328 . - . gene_id "ERVLB4_10q11.22c"; transcript_id "ERVLB4_10q11.22c"; locus "ERVLB4_10q11.22c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1104"; model_cov "1136"; model_pct "19.9"; chr10 rmsk exon 48282094 48282171 494 - . gene_id "ERVLB4_10q11.22c"; transcript_id "ERVLB4_10q11.22c"; locus "ERVLB4_10q11.22c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1104"; repClass "LTR"; repEnd "37"; repFamily "ERVL"; repLeft "-40"; repStart "-478"; chr10 rmsk exon 48282233 48283328 6892 - . gene_id "ERVLB4_10q11.22c"; transcript_id "ERVLB4_10q11.22c"; locus "ERVLB4_10q11.22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1104"; repClass "LTR"; repEnd "5671"; repFamily "ERVL"; repLeft "4535"; repStart "-43"; ### HERVP71A_10q11.22 ### chr10 rmsk gene 48330535 48335179 . - . gene_id "HERVP71A_10q11.22"; transcript_id "HERVP71A_10q11.22"; locus "HERVP71A_10q11.22"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0049"; model_cov "3286"; model_pct "43.3"; chr10 rmsk exon 48330535 48330954 3331 - . gene_id "HERVP71A_10q11.22"; transcript_id "HERVP71A_10q11.22"; locus "HERVP71A_10q11.22"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0049"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "40"; repStart "0"; chr10 rmsk exon 48330955 48333651 21174 - . gene_id "HERVP71A_10q11.22"; transcript_id "HERVP71A_10q11.22"; locus "HERVP71A_10q11.22"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0049"; repClass "LTR"; repEnd "6029"; repFamily "ERV1"; repLeft "3291"; repStart "-1561"; chr10 rmsk exon 48334177 48334721 4145 - . gene_id "HERVP71A_10q11.22"; transcript_id "HERVP71A_10q11.22"; locus "HERVP71A_10q11.22"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0049"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "1"; repStart "-7041"; chr10 rmsk exon 48334722 48335179 3420 - . gene_id "HERVP71A_10q11.22"; transcript_id "HERVP71A_10q11.22"; locus "HERVP71A_10q11.22"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0049"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_10q11.23 ### chr10 rmsk gene 48665296 48667004 . - . gene_id "HERVW_10q11.23"; transcript_id "HERVW_10q11.23"; locus "HERVW_10q11.23"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0200"; model_cov "1399"; model_pct "16.2"; chr10 rmsk exon 48665296 48665620 2541 - . gene_id "HERVW_10q11.23"; transcript_id "HERVW_10q11.23"; locus "HERVW_10q11.23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0200"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr10 rmsk exon 48665621 48665912 2359 - . gene_id "HERVW_10q11.23"; transcript_id "HERVW_10q11.23"; locus "HERVW_10q11.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0200"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr10 rmsk exon 48665903 48665941 306 - . gene_id "HERVW_10q11.23"; transcript_id "HERVW_10q11.23"; locus "HERVW_10q11.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0200"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr10 rmsk exon 48665935 48667004 8888 - . gene_id "HERVW_10q11.23"; transcript_id "HERVW_10q11.23"; locus "HERVW_10q11.23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0200"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4949"; repStart "-2607"; ### HERVL_10q11.23 ### chr10 rmsk gene 48990714 48997769 . - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0851"; model_cov "5645"; model_pct "99.8"; chr10 rmsk exon 48990714 48990753 282 - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0851"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chr10 rmsk exon 48990934 48991348 2779 - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0851"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr10 rmsk exon 48991349 48995915 42494 - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0851"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1099"; repStart "0"; chr10 rmsk exon 48996227 48997294 42494 - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0851"; repClass "LTR"; repEnd "1098"; repFamily "ERVL"; repLeft "8"; repStart "-4556"; chr10 rmsk exon 48997302 48997769 2754 - . gene_id "HERVL_10q11.23"; transcript_id "HERVL_10q11.23"; locus "HERVL_10q11.23"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0851"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_10q11.23 ### chr10 rmsk gene 49543227 49550170 . - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0346"; model_cov "5018"; model_pct "84.4"; chr10 rmsk exon 49543227 49543856 4817 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0346"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 49543857 49545582 12183 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0346"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4234"; repStart "0"; chr10 rmsk exon 49545898 49546488 16523 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0346"; repClass "LTR"; repEnd "3757"; repFamily "ERV1"; repLeft "3303"; repStart "-2189"; chr10 rmsk exon 49546818 49548928 16523 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0346"; repClass "LTR"; repEnd "3302"; repFamily "ERV1"; repLeft "1084"; repStart "-2644"; chr10 rmsk exon 49548919 49549551 4626 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0346"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "1"; repStart "-5311"; chr10 rmsk exon 49549552 49550170 4665 - . gene_id "MER41_10q11.23"; transcript_id "MER41_10q11.23"; locus "MER41_10q11.23"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0346"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10q11.23a ### chr10 rmsk gene 49560163 49561809 . + . gene_id "ERV316A3_10q11.23a"; transcript_id "ERV316A3_10q11.23a"; locus "ERV316A3_10q11.23a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1820"; model_cov "741"; model_pct "14.2"; chr10 rmsk exon 49560163 49560310 530 + . gene_id "ERV316A3_10q11.23a"; transcript_id "ERV316A3_10q11.23a"; locus "ERV316A3_10q11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1820"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "271"; chr10 rmsk exon 49560513 49561085 907 + . gene_id "ERV316A3_10q11.23a"; transcript_id "ERV316A3_10q11.23a"; locus "ERV316A3_10q11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1820"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "-4406"; repStart "184"; chr10 rmsk exon 49561700 49561809 540 + . gene_id "ERV316A3_10q11.23a"; transcript_id "ERV316A3_10q11.23a"; locus "ERV316A3_10q11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1820"; repClass "LTR"; repEnd "2056"; repFamily "ERVL"; repLeft "-3170"; repStart "1951"; ### ERVLB4_10q11.23a ### chr10 rmsk gene 49562050 49564929 . - . gene_id "ERVLB4_10q11.23a"; transcript_id "ERVLB4_10q11.23a"; locus "ERVLB4_10q11.23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1105"; model_cov "2816"; model_pct "49.3"; chr10 rmsk exon 49562050 49562730 5243 - . gene_id "ERVLB4_10q11.23a"; transcript_id "ERVLB4_10q11.23a"; locus "ERVLB4_10q11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1105"; repClass "LTR"; repEnd "2821"; repFamily "ERVL"; repLeft "2116"; repStart "-2893"; chr10 rmsk exon 49563022 49564929 5243 - . gene_id "ERVLB4_10q11.23a"; transcript_id "ERVLB4_10q11.23a"; locus "ERVLB4_10q11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1105"; repClass "LTR"; repEnd "2115"; repFamily "ERVL"; repLeft "4"; repStart "-3599"; ### MER4B_10q11.23 ### chr10 rmsk gene 49790561 49796780 . - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0279"; model_cov "2624"; model_pct "38.8"; chr10 rmsk exon 49790561 49790646 573 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "522"; repStart "-2"; chr10 rmsk exon 49791543 49792556 7000 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "2608"; repStart "-3120"; chr10 rmsk exon 49793115 49793486 7000 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "2607"; repFamily "ERV1"; repLeft "2596"; repStart "-4151"; chr10 rmsk exon 49793801 49794220 6454 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "1158"; repStart "-5171"; chr10 rmsk exon 49794540 49794804 6454 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "1157"; repFamily "ERV1"; repLeft "856"; repStart "-5601"; chr10 rmsk exon 49795112 49795975 6454 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "855"; repFamily "ERV1"; repLeft "2"; repStart "-5903"; chr10 rmsk exon 49795977 49796232 2440 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "340"; repStart "-80"; chr10 rmsk exon 49796561 49796780 2440 - . gene_id "MER4B_10q11.23"; transcript_id "MER4B_10q11.23"; locus "MER4B_10q11.23"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0279"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "90"; repStart "-271"; ### ERV316A3_10q11.23b ### chr10 rmsk gene 50159947 50162451 . + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1821"; model_cov "1659"; model_pct "31.7"; chr10 rmsk exon 50159947 50160292 1311 + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1821"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-13"; repStart "119"; chr10 rmsk exon 50160298 50161321 2832 + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1821"; repClass "LTR"; repEnd "1044"; repFamily "ERVL"; repLeft "-4182"; repStart "7"; chr10 rmsk exon 50161821 50161897 2832 + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1821"; repClass "LTR"; repEnd "1115"; repFamily "ERVL"; repLeft "-4111"; repStart "1045"; chr10 rmsk exon 50161887 50162076 695 + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1821"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3273"; repStart "1768"; chr10 rmsk exon 50162211 50162451 558 + . gene_id "ERV316A3_10q11.23b"; transcript_id "ERV316A3_10q11.23b"; locus "ERV316A3_10q11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1821"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "-2387"; repStart "2472"; ### ERV316A3_10q11.23c ### chr10 rmsk gene 50777832 50780339 . - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1822"; model_cov "1659"; model_pct "31.7"; chr10 rmsk exon 50777832 50778072 507 - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1822"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "2472"; repStart "-2387"; chr10 rmsk exon 50778207 50778396 672 - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1822"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "1768"; repStart "-3273"; chr10 rmsk exon 50778386 50778462 2801 - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1822"; repClass "LTR"; repEnd "1115"; repFamily "ERVL"; repLeft "1045"; repStart "-4111"; chr10 rmsk exon 50778965 50779988 2801 - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1822"; repClass "LTR"; repEnd "1044"; repFamily "ERVL"; repLeft "7"; repStart "-4182"; chr10 rmsk exon 50779994 50780339 1301 - . gene_id "ERV316A3_10q11.23c"; transcript_id "ERV316A3_10q11.23c"; locus "ERV316A3_10q11.23c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1822"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "119"; repStart "-13"; ### ERVLB4_10q11.23b ### chr10 rmsk gene 50953059 50954697 . - . gene_id "ERVLB4_10q11.23b"; transcript_id "ERVLB4_10q11.23b"; locus "ERVLB4_10q11.23b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1106"; model_cov "1323"; model_pct "23.2"; chr10 rmsk exon 50953059 50953985 6571 - . gene_id "ERVLB4_10q11.23b"; transcript_id "ERVLB4_10q11.23b"; locus "ERVLB4_10q11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1106"; repClass "LTR"; repEnd "5490"; repFamily "ERVL"; repLeft "4596"; repStart "-224"; chr10 rmsk exon 50954285 50954697 6571 - . gene_id "ERVLB4_10q11.23b"; transcript_id "ERVLB4_10q11.23b"; locus "ERVLB4_10q11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1106"; repClass "LTR"; repEnd "4595"; repFamily "ERVL"; repLeft "4166"; repStart "-1119"; ### HERVL_10q21.1a ### chr10 rmsk gene 51406790 51410669 . - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0852"; model_cov "2590"; model_pct "45.8"; chr10 rmsk exon 51406790 51407230 3153 - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0852"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 51407231 51409574 19792 - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0852"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3290"; repStart "0"; chr10 rmsk exon 51409871 51410096 19792 - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0852"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "3063"; repStart "-2365"; chr10 rmsk exon 51410125 51410226 2657 - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0852"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "380"; repStart "-1"; chr10 rmsk exon 51410292 51410669 2657 - . gene_id "HERVL_10q21.1a"; transcript_id "HERVL_10q21.1a"; locus "HERVL_10q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0852"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "1"; repStart "-65"; ### HERVH_10q21.1a ### chr10 rmsk gene 52033757 52039561 . - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0806"; model_cov "4916"; model_pct "63.7"; chr10 rmsk exon 52033757 52034207 3466 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 52034208 52034587 2495 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 52034586 52034801 1346 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr10 rmsk exon 52034803 52035454 4190 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 52035457 52035961 3296 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr10 rmsk exon 52035952 52036101 916 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 52036081 52039110 20649 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr10 rmsk exon 52039113 52039561 3385 - . gene_id "HERVH_10q21.1a"; transcript_id "HERVH_10q21.1a"; locus "HERVH_10q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0806"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_10q21.1 ### chr10 rmsk gene 52946389 52956110 . - . gene_id "HERVS71_10q21.1"; transcript_id "HERVS71_10q21.1"; locus "HERVS71_10q21.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0032"; model_cov "8905"; model_pct "99.2"; chr10 rmsk exon 52946389 52946907 2558 - . gene_id "HERVS71_10q21.1"; transcript_id "HERVS71_10q21.1"; locus "HERVS71_10q21.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0032"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 52946908 52955585 43299 - . gene_id "HERVS71_10q21.1"; transcript_id "HERVS71_10q21.1"; locus "HERVS71_10q21.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0032"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "4"; repStart "-69"; chr10 rmsk exon 52955589 52956110 2569 - . gene_id "HERVS71_10q21.1"; transcript_id "HERVS71_10q21.1"; locus "HERVS71_10q21.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0032"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV30_10q21.1 ### chr10 rmsk gene 53025174 53030661 . - . gene_id "HERV30_10q21.1"; transcript_id "HERV30_10q21.1"; locus "HERV30_10q21.1"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0015"; model_cov "4073"; model_pct "49.3"; chr10 rmsk exon 53025174 53025888 4997 - . gene_id "HERV30_10q21.1"; transcript_id "HERV30_10q21.1"; locus "HERV30_10q21.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0015"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 53025889 53026352 3248 - . gene_id "HERV30_10q21.1"; transcript_id "HERV30_10q21.1"; locus "HERV30_10q21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0015"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7796"; repStart "0"; chr10 rmsk exon 53026355 53029943 27318 - . gene_id "HERV30_10q21.1"; transcript_id "HERV30_10q21.1"; locus "HERV30_10q21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0015"; repClass "LTR"; repEnd "3613"; repFamily "ERV1"; repLeft "1"; repStart "-4644"; chr10 rmsk exon 53029944 53030661 4927 - . gene_id "HERV30_10q21.1"; transcript_id "HERV30_10q21.1"; locus "HERV30_10q21.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0015"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10q21.1a ### chr10 rmsk gene 53184226 53190464 . - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1823"; model_cov "3133"; model_pct "60.0"; chr10 rmsk exon 53184226 53184492 404 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "5054"; repFamily "ERVL"; repLeft "4775"; repStart "-172"; chr10 rmsk exon 53184511 53184594 279 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "4725"; repFamily "ERVL"; repLeft "4645"; repStart "-501"; chr10 rmsk exon 53184983 53186412 3103 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "4234"; repFamily "ERVL"; repLeft "2796"; repStart "-992"; chr10 rmsk exon 53186769 53186957 3103 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "2795"; repFamily "ERVL"; repLeft "2612"; repStart "-2431"; chr10 rmsk exon 53189284 53189857 3103 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "2611"; repFamily "ERVL"; repLeft "2012"; repStart "-2615"; chr10 rmsk exon 53189860 53190258 610 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "1225"; repStart "-3601"; chr10 rmsk exon 53190308 53190464 307 - . gene_id "ERV316A3_10q21.1a"; transcript_id "ERV316A3_10q21.1a"; locus "ERV316A3_10q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1823"; repClass "LTR"; repEnd "1415"; repFamily "ERVL"; repLeft "1261"; repStart "-3811"; ### HML3_10q21.1 ### chr10 rmsk gene 53335597 53342907 . - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0157"; model_cov "4337"; model_pct "72.0"; chr10 rmsk exon 53335597 53336112 3921 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 53336113 53338410 18801 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr10 rmsk exon 53338411 53339922 12531 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1280"; repStart "-3223"; chr10 rmsk exon 53339923 53340159 2047 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "368"; repStart "-5417"; chr10 rmsk exon 53340234 53340394 1309 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "281"; repFamily "ERVK"; repLeft "121"; repStart "-5740"; chr10 rmsk exon 53342269 53342392 887 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "126"; repFamily "ERVK"; repLeft "1"; repStart "-5895"; chr10 rmsk exon 53342393 53342907 4086 - . gene_id "HML3_10q21.1"; transcript_id "HML3_10q21.1"; locus "HML3_10q21.1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0157"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_10q21.1b ### chr10 rmsk gene 53492723 53493946 . - . gene_id "HERVH_10q21.1b"; transcript_id "HERVH_10q21.1b"; locus "HERVH_10q21.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0807"; model_cov "790"; model_pct "10.2"; chr10 rmsk exon 53492723 53493172 3454 - . gene_id "HERVH_10q21.1b"; transcript_id "HERVH_10q21.1b"; locus "HERVH_10q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0807"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 53493173 53493552 2509 - . gene_id "HERVH_10q21.1b"; transcript_id "HERVH_10q21.1b"; locus "HERVH_10q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0807"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 53493551 53493771 1335 - . gene_id "HERVH_10q21.1b"; transcript_id "HERVH_10q21.1b"; locus "HERVH_10q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0807"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr10 rmsk exon 53493769 53493946 1014 - . gene_id "HERVH_10q21.1b"; transcript_id "HERVH_10q21.1b"; locus "HERVH_10q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0807"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4972"; repStart "-2564"; ### HERVH_10q21.1c ### chr10 rmsk gene 53500029 53504727 . - . gene_id "HERVH_10q21.1c"; transcript_id "HERVH_10q21.1c"; locus "HERVH_10q21.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0808"; model_cov "4301"; model_pct "55.8"; chr10 rmsk exon 53500029 53500511 3094 - . gene_id "HERVH_10q21.1c"; transcript_id "HERVH_10q21.1c"; locus "HERVH_10q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0808"; repClass "LTR"; repEnd "4985"; repFamily "ERV1"; repLeft "4488"; repStart "-2728"; chr10 rmsk exon 53500514 53501368 6002 - . gene_id "HERVH_10q21.1c"; transcript_id "HERVH_10q21.1c"; locus "HERVH_10q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0808"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr10 rmsk exon 53501348 53504264 19632 - . gene_id "HERVH_10q21.1c"; transcript_id "HERVH_10q21.1c"; locus "HERVH_10q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0808"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "44"; repStart "-4718"; chr10 rmsk exon 53504278 53504727 3432 - . gene_id "HERVH_10q21.1c"; transcript_id "HERVH_10q21.1c"; locus "HERVH_10q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0808"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_10q21.1 ### chr10 rmsk gene 53786677 53788540 . - . gene_id "HERVL40_10q21.1"; transcript_id "HERVL40_10q21.1"; locus "HERVL40_10q21.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0282"; model_cov "1513"; model_pct "27.4"; chr10 rmsk exon 53786677 53787185 1522 - . gene_id "HERVL40_10q21.1"; transcript_id "HERVL40_10q21.1"; locus "HERVL40_10q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0282"; repClass "LTR"; repEnd "5479"; repFamily "ERVL"; repLeft "4967"; repStart "-51"; chr10 rmsk exon 53787373 53787527 691 - . gene_id "HERVL40_10q21.1"; transcript_id "HERVL40_10q21.1"; locus "HERVL40_10q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0282"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "4438"; repStart "-938"; chr10 rmsk exon 53787632 53787888 900 - . gene_id "HERVL40_10q21.1"; transcript_id "HERVL40_10q21.1"; locus "HERVL40_10q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0282"; repClass "LTR"; repEnd "4175"; repFamily "ERVL"; repLeft "3918"; repStart "-1355"; chr10 rmsk exon 53787990 53788540 1215 - . gene_id "HERVL40_10q21.1"; transcript_id "HERVL40_10q21.1"; locus "HERVL40_10q21.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0282"; repClass "LTR"; repEnd "3392"; repFamily "ERVL"; repLeft "2802"; repStart "-2138"; ### HERVL_10q21.1b ### chr10 rmsk gene 54102316 54105755 . - . gene_id "HERVL_10q21.1b"; transcript_id "HERVL_10q21.1b"; locus "HERVL_10q21.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0853"; model_cov "2579"; model_pct "45.6"; chr10 rmsk exon 54102316 54104556 18850 - . gene_id "HERVL_10q21.1b"; transcript_id "HERVL_10q21.1b"; locus "HERVL_10q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0853"; repClass "LTR"; repEnd "2581"; repFamily "ERVL"; repLeft "360"; repStart "-3073"; chr10 rmsk exon 54104867 54105203 18850 - . gene_id "HERVL_10q21.1b"; transcript_id "HERVL_10q21.1b"; locus "HERVL_10q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0853"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "1"; repStart "-5295"; chr10 rmsk exon 54105204 54105272 324 - . gene_id "HERVL_10q21.1b"; transcript_id "HERVL_10q21.1b"; locus "HERVL_10q21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0853"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr10 rmsk exon 54105360 54105755 2920 - . gene_id "HERVL_10q21.1b"; transcript_id "HERVL_10q21.1b"; locus "HERVL_10q21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0853"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "1"; repStart "-26"; ### HERVH_10q21.1d ### chr10 rmsk gene 54166676 54172501 . + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0809"; model_cov "5058"; model_pct "65.6"; chr10 rmsk exon 54166676 54167126 3431 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 54167129 54170301 20707 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr10 rmsk exon 54170292 54170796 3294 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr10 rmsk exon 54170799 54171455 4336 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr10 rmsk exon 54171460 54171678 1364 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr10 rmsk exon 54171677 54172056 2521 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 54172057 54172501 3281 + . gene_id "HERVH_10q21.1d"; transcript_id "HERVH_10q21.1d"; locus "HERVH_10q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0809"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_10q21.1a ### chr10 rmsk gene 54388165 54389351 . - . gene_id "ERVLE_10q21.1a"; transcript_id "ERVLE_10q21.1a"; locus "ERVLE_10q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2399"; model_cov "1092"; model_pct "19.3"; chr10 rmsk exon 54388165 54389072 1080 - . gene_id "ERVLE_10q21.1a"; transcript_id "ERVLE_10q21.1a"; locus "ERVLE_10q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2399"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "4039"; repStart "-716"; chr10 rmsk exon 54389174 54389351 339 - . gene_id "ERVLE_10q21.1a"; transcript_id "ERVLE_10q21.1a"; locus "ERVLE_10q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2399"; repClass "LTR"; repEnd "1326"; repFamily "ERVL"; repLeft "1146"; repStart "-4341"; ### ERVLE_10q21.1b ### chr10 rmsk gene 54510198 54511128 . + . gene_id "ERVLE_10q21.1b"; transcript_id "ERVLE_10q21.1b"; locus "ERVLE_10q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2400"; model_cov "950"; model_pct "16.8"; chr10 rmsk exon 54510198 54510483 1059 + . gene_id "ERVLE_10q21.1b"; transcript_id "ERVLE_10q21.1b"; locus "ERVLE_10q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2400"; repClass "LTR"; repEnd "3952"; repFamily "ERVL"; repLeft "-1715"; repStart "3657"; chr10 rmsk exon 54510502 54511128 2099 + . gene_id "ERVLE_10q21.1b"; transcript_id "ERVLE_10q21.1b"; locus "ERVLE_10q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2400"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5012"; ### HUERSP2_10q21.1 ### chr10 rmsk gene 55262253 55267089 . + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0077"; model_cov "2993"; model_pct "96.9"; chr10 rmsk exon 55262253 55263075 4924 + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0077"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr10 rmsk exon 55263080 55263203 456 + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0077"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "5"; chr10 rmsk exon 55263227 55263723 11561 + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0077"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "-2338"; repStart "213"; chr10 rmsk exon 55264034 55266424 11561 + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0077"; repClass "LTR"; repEnd "3085"; repFamily "ERV1"; repLeft "-3"; repStart "751"; chr10 rmsk exon 55266425 55267089 1937 + . gene_id "HUERSP2_10q21.1"; transcript_id "HUERSP2_10q21.1"; locus "HUERSP2_10q21.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0077"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "63"; ### ERVLB4_10q21.1a ### chr10 rmsk gene 55302407 55303569 . - . gene_id "ERVLB4_10q21.1a"; transcript_id "ERVLB4_10q21.1a"; locus "ERVLB4_10q21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1110"; model_cov "804"; model_pct "14.1"; chr10 rmsk exon 55302407 55302780 1558 - . gene_id "ERVLB4_10q21.1a"; transcript_id "ERVLB4_10q21.1a"; locus "ERVLB4_10q21.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1110"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "3"; repStart "-48"; chr10 rmsk exon 55302783 55303569 3949 - . gene_id "ERVLB4_10q21.1a"; transcript_id "ERVLB4_10q21.1a"; locus "ERVLB4_10q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1110"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4910"; repStart "0"; ### ERV316A3_10q21.1b ### chr10 rmsk gene 55557450 55558494 . + . gene_id "ERV316A3_10q21.1b"; transcript_id "ERV316A3_10q21.1b"; locus "ERV316A3_10q21.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1825"; model_cov "1064"; model_pct "20.4"; chr10 rmsk exon 55557450 55558494 1785 + . gene_id "ERV316A3_10q21.1b"; transcript_id "ERV316A3_10q21.1b"; locus "ERV316A3_10q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1825"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "-932"; repStart "3230"; ### ERV316A3_10q21.1c ### chr10 rmsk gene 55712206 55714124 . - . gene_id "ERV316A3_10q21.1c"; transcript_id "ERV316A3_10q21.1c"; locus "ERV316A3_10q21.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1828"; model_cov "1979"; model_pct "37.9"; chr10 rmsk exon 55712206 55714124 1185 - . gene_id "ERV316A3_10q21.1c"; transcript_id "ERV316A3_10q21.1c"; locus "ERV316A3_10q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1828"; repClass "LTR"; repEnd "2930"; repFamily "ERVL"; repLeft "951"; repStart "-2296"; ### HERVL74_10q21.1 ### chr10 rmsk gene 55818625 55826019 . + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0062"; model_cov "4259"; model_pct "74.9"; chr10 rmsk exon 55818625 55818960 1279 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-47"; repStart "3"; chr10 rmsk exon 55819017 55819137 325 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "119"; repFamily "ERVL"; repLeft "-5566"; repStart "1"; chr10 rmsk exon 55819718 55819822 516 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "812"; repFamily "ERVL"; repLeft "-4873"; repStart "710"; chr10 rmsk exon 55820504 55820673 516 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "995"; repFamily "ERVL"; repLeft "-4690"; repStart "813"; chr10 rmsk exon 55820899 55822057 15137 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "2318"; repFamily "ERVL"; repLeft "-3367"; repStart "1131"; chr10 rmsk exon 55822906 55823267 15137 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "2672"; repFamily "ERVL"; repLeft "-3013"; repStart "2319"; chr10 rmsk exon 55823692 55826019 15137 + . gene_id "HERVL74_10q21.1"; transcript_id "HERVL74_10q21.1"; locus "HERVL74_10q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0062"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "-695"; repStart "2673"; ### HERVH_10q21.1e ### chr10 rmsk gene 55971512 55978521 . + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; category "unknown"; intModel "HERVH-int"; locid "HERVH-int_0810"; model_cov "5975"; model_pct "77.5"; chr10 rmsk exon 55971512 55971900 2444 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 55971901 55974615 13938 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr10 rmsk exon 55974595 55975196 3302 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3140"; chr10 rmsk exon 55975187 55975838 3872 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "4615"; repFamily "ERV1"; repLeft "-3098"; repStart "3956"; chr10 rmsk exon 55975839 55976087 1326 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "195"; chr10 rmsk exon 55976393 55976757 2004 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr10 rmsk exon 55976758 55977006 1526 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "4812"; repFamily "ERV1"; repLeft "-2901"; repStart "4555"; chr10 rmsk exon 55977006 55977895 4992 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5108"; chr10 rmsk exon 55977889 55978206 1385 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "7481"; repFamily "ERV1"; repLeft "-232"; repStart "7157"; chr10 rmsk exon 55978282 55978521 1235 + . gene_id "HERVH_10q21.1e"; transcript_id "HERVH_10q21.1e"; locus "HERVH_10q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0810"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7475"; ### ERVLE_10q21.1c ### chr10 rmsk gene 56056954 56057690 . - . gene_id "ERVLE_10q21.1c"; transcript_id "ERVLE_10q21.1c"; locus "ERVLE_10q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2401"; model_cov "747"; model_pct "13.2"; chr10 rmsk exon 56056954 56057295 469 - . gene_id "ERVLE_10q21.1c"; transcript_id "ERVLE_10q21.1c"; locus "ERVLE_10q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2401"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "2108"; repStart "-3181"; chr10 rmsk exon 56057329 56057690 820 - . gene_id "ERVLE_10q21.1c"; transcript_id "ERVLE_10q21.1c"; locus "ERVLE_10q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2401"; repClass "LTR"; repEnd "1630"; repFamily "ERVL"; repLeft "1261"; repStart "-4037"; ### ERVLB4_10q21.1b ### chr10 rmsk gene 56422138 56426878 . + . gene_id "ERVLB4_10q21.1b"; transcript_id "ERVLB4_10q21.1b"; locus "ERVLB4_10q21.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1111"; model_cov "4400"; model_pct "77.0"; chr10 rmsk exon 56422138 56422545 19933 + . gene_id "ERVLB4_10q21.1b"; transcript_id "ERVLB4_10q21.1b"; locus "ERVLB4_10q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1111"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4565"; repStart "725"; chr10 rmsk exon 56422620 56426150 19933 + . gene_id "ERVLB4_10q21.1b"; transcript_id "ERVLB4_10q21.1b"; locus "ERVLB4_10q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1111"; repClass "LTR"; repEnd "4833"; repFamily "ERVL"; repLeft "-881"; repStart "1150"; chr10 rmsk exon 56426130 56426412 1616 + . gene_id "ERVLB4_10q21.1b"; transcript_id "ERVLB4_10q21.1b"; locus "ERVLB4_10q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1111"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5421"; chr10 rmsk exon 56426413 56426878 2204 + . gene_id "ERVLB4_10q21.1b"; transcript_id "ERVLB4_10q21.1b"; locus "ERVLB4_10q21.1b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1111"; repClass "LTR"; repEnd "490"; repFamily "ERVL"; repLeft "-66"; repStart "1"; ### ERV316A3_10q21.1d ### chr10 rmsk gene 56560477 56563122 . + . gene_id "ERV316A3_10q21.1d"; transcript_id "ERV316A3_10q21.1d"; locus "ERV316A3_10q21.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1830"; model_cov "1691"; model_pct "32.4"; chr10 rmsk exon 56560477 56560812 871 + . gene_id "ERV316A3_10q21.1d"; transcript_id "ERV316A3_10q21.1d"; locus "ERV316A3_10q21.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1830"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-60"; repStart "6"; chr10 rmsk exon 56561272 56563122 2955 + . gene_id "ERV316A3_10q21.1d"; transcript_id "ERV316A3_10q21.1d"; locus "ERV316A3_10q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1830"; repClass "LTR"; repEnd "4338"; repFamily "ERVL"; repLeft "-888"; repStart "2647"; ### HERV9_10q21.1a ### chr10 rmsk gene 56572703 56576045 . - . gene_id "HERV9_10q21.1a"; transcript_id "HERV9_10q21.1a"; locus "HERV9_10q21.1a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0124"; model_cov "2319"; model_pct "27.5"; chr10 rmsk exon 56572703 56573342 3998 - . gene_id "HERV9_10q21.1a"; transcript_id "HERV9_10q21.1a"; locus "HERV9_10q21.1a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0124"; repClass "LTR"; repEnd "694"; repFamily "ERV1"; repLeft "1"; repStart "-132"; chr10 rmsk exon 56573746 56574595 6809 - . gene_id "HERV9_10q21.1a"; transcript_id "HERV9_10q21.1a"; locus "HERV9_10q21.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0124"; repClass "LTR"; repEnd "7955"; repFamily "ERV1"; repLeft "7096"; repStart "-481"; chr10 rmsk exon 56574587 56576045 11728 - . gene_id "HERV9_10q21.1a"; transcript_id "HERV9_10q21.1a"; locus "HERV9_10q21.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0124"; repClass "LTR"; repEnd "3207"; repFamily "ERV1"; repLeft "1747"; repStart "-5229"; ### LTR57_10q21.1 ### chr10 rmsk gene 56623935 56629208 . - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0115"; model_cov "4676"; model_pct "87.5"; chr10 rmsk exon 56623935 56624319 1899 - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0115"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 56624320 56625800 7835 - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0115"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "3818"; repStart "0"; chr10 rmsk exon 56625797 56628954 18020 - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0115"; repClass "LTR"; repEnd "3152"; repFamily "ERVL"; repLeft "1"; repStart "-2191"; chr10 rmsk exon 56628955 56629121 824 - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0115"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "242"; repStart "0"; chr10 rmsk exon 56629137 56629208 348 - . gene_id "LTR57_10q21.1"; transcript_id "LTR57_10q21.1"; locus "LTR57_10q21.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0115"; repClass "LTR"; repEnd "63"; repFamily "ERVL"; repLeft "1"; repStart "-348"; ### ERV316A3_10q21.1e ### chr10 rmsk gene 56967253 56969230 . - . gene_id "ERV316A3_10q21.1e"; transcript_id "ERV316A3_10q21.1e"; locus "ERV316A3_10q21.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1831"; model_cov "1011"; model_pct "19.3"; chr10 rmsk exon 56967253 56968261 1921 - . gene_id "ERV316A3_10q21.1e"; transcript_id "ERV316A3_10q21.1e"; locus "ERV316A3_10q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1831"; repClass "LTR"; repEnd "4942"; repFamily "ERVL"; repLeft "3931"; repStart "-284"; chr10 rmsk exon 56968815 56969230 836 - . gene_id "ERV316A3_10q21.1e"; transcript_id "ERV316A3_10q21.1e"; locus "ERV316A3_10q21.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1831"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL18_10q21.1a ### chr10 rmsk gene 57014854 57018042 . + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0099"; model_cov "2201"; model_pct "36.4"; chr10 rmsk exon 57014854 57015129 1313 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "-7"; repStart "322"; chr10 rmsk exon 57015170 57015454 1353 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "-5757"; repStart "4"; chr10 rmsk exon 57015456 57015715 1261 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "-5291"; repStart "492"; chr10 rmsk exon 57015700 57016069 1144 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1382"; chr10 rmsk exon 57016069 57016323 1170 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "2449"; repFamily "ERVL"; repLeft "-3598"; repStart "2119"; chr10 rmsk exon 57016322 57016592 1362 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "2980"; repFamily "ERVL"; repLeft "-3067"; repStart "2717"; chr10 rmsk exon 57016623 57016755 817 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2959"; repStart "2955"; chr10 rmsk exon 57016752 57017259 2988 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "3449"; repFamily "ERVL"; repLeft "-2598"; repStart "2952"; chr10 rmsk exon 57017450 57018042 2460 + . gene_id "HERVL18_10q21.1a"; transcript_id "HERVL18_10q21.1a"; locus "HERVL18_10q21.1a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0099"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_10q21.1c ### chr10 rmsk gene 57134851 57141583 . + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0854"; model_cov "5652"; model_pct "100.0"; chr10 rmsk exon 57134851 57135334 3064 + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0854"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr10 rmsk exon 57135335 57136723 40713 + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0854"; repClass "LTR"; repEnd "1410"; repFamily "ERVL"; repLeft "-4244"; repStart "1"; chr10 rmsk exon 57136796 57140974 40713 + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0854"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1411"; chr10 rmsk exon 57140975 57141354 2869 + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0854"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-37"; repStart "1"; chr10 rmsk exon 57141545 57141583 2869 + . gene_id "HERVL_10q21.1c"; transcript_id "HERVL_10q21.1c"; locus "HERVL_10q21.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0854"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "408"; ### HUERSP3_10q21.1 ### chr10 rmsk gene 57338845 57345104 . - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0127"; model_cov "4762"; model_pct "53.4"; chr10 rmsk exon 57338845 57338907 454 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "65"; repFamily "ERV1"; repLeft "1"; repStart "-601"; chr10 rmsk exon 57338908 57339171 1258 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr10 rmsk exon 57339649 57339758 440 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "6874"; repStart "-1937"; chr10 rmsk exon 57339770 57340067 1443 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6616"; repStart "-2007"; chr10 rmsk exon 57340223 57340659 2622 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6162"; repStart "-2321"; chr10 rmsk exon 57340646 57341326 4167 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4884"; repStart "-3343"; chr10 rmsk exon 57341612 57341703 520 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "4630"; repFamily "ERV1"; repLeft "4539"; repStart "-4289"; chr10 rmsk exon 57341697 57343697 7765 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "972"; repStart "-5635"; chr10 rmsk exon 57344378 57344613 6395 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "2472"; repFamily "ERV1"; repLeft "2248"; repStart "-6447"; chr10 rmsk exon 57344620 57344939 1371 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "2060"; repFamily "ERV1"; repLeft "1745"; repStart "-6859"; chr10 rmsk exon 57344934 57345000 357 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "1596"; repFamily "ERV1"; repLeft "1526"; repStart "-7323"; chr10 rmsk exon 57345036 57345104 378 - . gene_id "HUERSP3_10q21.1"; transcript_id "HUERSP3_10q21.1"; locus "HUERSP3_10q21.1"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0127"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "596"; repStart "0"; ### ERV316A3_10q21.1f ### chr10 rmsk gene 57406206 57407667 . - . gene_id "ERV316A3_10q21.1f"; transcript_id "ERV316A3_10q21.1f"; locus "ERV316A3_10q21.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1833"; model_cov "1215"; model_pct "23.2"; chr10 rmsk exon 57406206 57406965 1202 - . gene_id "ERV316A3_10q21.1f"; transcript_id "ERV316A3_10q21.1f"; locus "ERV316A3_10q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1833"; repClass "LTR"; repEnd "3825"; repFamily "ERVL"; repLeft "3003"; repStart "-1401"; chr10 rmsk exon 57407294 57407667 793 - . gene_id "ERV316A3_10q21.1f"; transcript_id "ERV316A3_10q21.1f"; locus "ERV316A3_10q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1833"; repClass "LTR"; repEnd "2676"; repFamily "ERVL"; repLeft "2283"; repStart "-2550"; ### HUERSP3B_10q21.1a ### chr10 rmsk gene 57574785 57581311 . - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0083"; model_cov "4815"; model_pct "64.9"; chr10 rmsk exon 57574785 57575362 3294 - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0083"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 57575901 57576360 2326 - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0083"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "6489"; repStart "-473"; chr10 rmsk exon 57576329 57577802 8877 - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0083"; repClass "LTR"; repEnd "6837"; repFamily "ERV1"; repLeft "5117"; repStart "-581"; chr10 rmsk exon 57578231 57580798 10665 - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0083"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "3"; repStart "-4776"; chr10 rmsk exon 57580801 57581311 2675 - . gene_id "HUERSP3B_10q21.1a"; transcript_id "HUERSP3B_10q21.1a"; locus "HUERSP3B_10q21.1a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0083"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HUERSP3B_10q21.1b ### chr10 rmsk gene 57788071 57795666 . + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0084"; model_cov "6831"; model_pct "92.1"; chr10 rmsk exon 57788071 57788660 3424 + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0084"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 57788664 57788769 761 + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0084"; repClass "LTR"; repEnd "-1390"; repFamily "ERV1"; repLeft "-8808"; repStart "-1497"; chr10 rmsk exon 57788774 57791274 23802 + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0084"; repClass "LTR"; repEnd "1468"; repFamily "ERV1"; repLeft "-5950"; repStart "-1235"; chr10 rmsk exon 57791706 57795422 23802 + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0084"; repClass "LTR"; repEnd "5490"; repFamily "ERV1"; repLeft "-1928"; repStart "1469"; chr10 rmsk exon 57795539 57795666 708 + . gene_id "HUERSP3B_10q21.1b"; transcript_id "HUERSP3B_10q21.1b"; locus "HUERSP3B_10q21.1b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0084"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "473"; ### HERVL18_10q21.1b ### chr10 rmsk gene 57816710 57819018 . + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0101"; model_cov "1712"; model_pct "28.3"; chr10 rmsk exon 57816710 57816812 673 + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0101"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1707"; chr10 rmsk exon 57816812 57818206 9086 + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0101"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2467"; repStart "2119"; chr10 rmsk exon 57818208 57818266 418 + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0101"; repClass "LTR"; repEnd "4452"; repFamily "ERVL"; repLeft "-1595"; repStart "4394"; chr10 rmsk exon 57818258 57818348 561 + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0101"; repClass "LTR"; repEnd "5214"; repFamily "ERVL"; repLeft "-833"; repStart "5124"; chr10 rmsk exon 57818533 57819018 951 + . gene_id "HERVL18_10q21.1b"; transcript_id "HERVL18_10q21.1b"; locus "HERVL18_10q21.1b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0101"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "-13"; repStart "1"; ### HERV9_10q21.1b ### chr10 rmsk gene 57832365 57842204 . + . gene_id "HERV9_10q21.1b"; transcript_id "HERV9_10q21.1b"; locus "HERV9_10q21.1b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0125"; model_cov "8435"; model_pct "100.0"; chr10 rmsk exon 57832365 57833161 5728 + . gene_id "HERV9_10q21.1b"; transcript_id "HERV9_10q21.1b"; locus "HERV9_10q21.1b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0125"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 57833162 57841560 69450 + . gene_id "HERV9_10q21.1b"; transcript_id "HERV9_10q21.1b"; locus "HERV9_10q21.1b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0125"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 57841561 57842204 4811 + . gene_id "HERV9_10q21.1b"; transcript_id "HERV9_10q21.1b"; locus "HERV9_10q21.1b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0125"; repClass "LTR"; repEnd "694"; repFamily "ERV1"; repLeft "-132"; repStart "1"; ### ERV316A3_10q21.1g ### chr10 rmsk gene 58415047 58416306 . - . gene_id "ERV316A3_10q21.1g"; transcript_id "ERV316A3_10q21.1g"; locus "ERV316A3_10q21.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1834"; model_cov "990"; model_pct "18.9"; chr10 rmsk exon 58415047 58415314 1118 - . gene_id "ERV316A3_10q21.1g"; transcript_id "ERV316A3_10q21.1g"; locus "ERV316A3_10q21.1g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1834"; repClass "LTR"; repEnd "307"; repFamily "ERVL"; repLeft "1"; repStart "-115"; chr10 rmsk exon 58415316 58416306 3097 - . gene_id "ERV316A3_10q21.1g"; transcript_id "ERV316A3_10q21.1g"; locus "ERV316A3_10q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1834"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4235"; repStart "-1"; ### HERVL18_10q21.1c ### chr10 rmsk gene 58615322 58618645 . + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0102"; model_cov "2437"; model_pct "40.3"; chr10 rmsk exon 58615322 58615678 2125 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 58615697 58616201 2513 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "-5549"; repStart "1"; chr10 rmsk exon 58616196 58616643 2115 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "1614"; repFamily "ERVL"; repLeft "-4433"; repStart "1149"; chr10 rmsk exon 58616677 58616953 1121 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "2484"; repFamily "ERVL"; repLeft "-3563"; repStart "2119"; chr10 rmsk exon 58616922 58617807 4661 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr10 rmsk exon 58617810 58617903 646 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "-1559"; repStart "4394"; chr10 rmsk exon 58617906 58617962 335 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "5211"; chr10 rmsk exon 58617963 58618064 616 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr10 rmsk exon 58618247 58618645 1916 + . gene_id "HERVL18_10q21.1c"; transcript_id "HERVL18_10q21.1c"; locus "HERVL18_10q21.1c"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0102"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_10q21.1f ### chr10 rmsk gene 58860995 58867331 . - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0812"; model_cov "4913"; model_pct "63.7"; chr10 rmsk exon 58860995 58861445 3548 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 58861446 58861822 2360 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr10 rmsk exon 58861823 58862041 1296 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr10 rmsk exon 58862043 58862704 4188 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 58862707 58863211 3182 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr10 rmsk exon 58863202 58863351 909 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 58863331 58866002 18980 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "411"; repStart "-4718"; chr10 rmsk exon 58866480 58866878 18980 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-7303"; chr10 rmsk exon 58866881 58867331 3494 - . gene_id "HERVH_10q21.1f"; transcript_id "HERVH_10q21.1f"; locus "HERVH_10q21.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0812"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_10q21.1h ### chr10 rmsk gene 59096313 59096864 . - . gene_id "ERV316A3_10q21.1h"; transcript_id "ERV316A3_10q21.1h"; locus "ERV316A3_10q21.1h"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1835"; model_cov "583"; model_pct "11.2"; chr10 rmsk exon 59096313 59096864 1201 - . gene_id "ERV316A3_10q21.1h"; transcript_id "ERV316A3_10q21.1h"; locus "ERV316A3_10q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1835"; repClass "LTR"; repEnd "4744"; repFamily "ERVL"; repLeft "4161"; repStart "-482"; ### HARLEQUIN_10q21.2a ### chr10 rmsk gene 59726526 59734042 . - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0122"; model_cov "6508"; model_pct "94.4"; chr10 rmsk exon 59726526 59726923 2929 - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0122"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 59726924 59732019 40812 - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0122"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1807"; repStart "0"; chr10 rmsk exon 59732008 59732977 9690 - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0122"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "464"; repStart "-5474"; chr10 rmsk exon 59733018 59733592 9690 - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0122"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "2"; repStart "-6433"; chr10 rmsk exon 59733593 59734042 3541 - . gene_id "HARLEQUIN_10q21.2a"; transcript_id "HARLEQUIN_10q21.2a"; locus "HARLEQUIN_10q21.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0122"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "13"; repStart "0"; ### HARLEQUIN_10q21.2b ### chr10 rmsk gene 59765313 59771489 . - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0123"; model_cov "5278"; model_pct "76.5"; chr10 rmsk exon 59765313 59768036 22434 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "5991"; repFamily "ERV1"; repLeft "3263"; repStart "-905"; chr10 rmsk exon 59768095 59769584 10690 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "1807"; repStart "-3608"; chr10 rmsk exon 59769581 59770006 2917 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "-485"; repFamily "ERV1"; repLeft "-917"; repStart "-7381"; chr10 rmsk exon 59769978 59770008 4755 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "901"; repFamily "ERV1"; repLeft "873"; repStart "-5995"; chr10 rmsk exon 59770062 59770655 4755 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "872"; repFamily "ERV1"; repLeft "263"; repStart "-6024"; chr10 rmsk exon 59771034 59771489 3723 - . gene_id "HARLEQUIN_10q21.2b"; transcript_id "HARLEQUIN_10q21.2b"; locus "HARLEQUIN_10q21.2b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0123"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_10q21.2a ### chr10 rmsk gene 61033703 61035784 . - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0201"; model_cov "1375"; model_pct "15.9"; chr10 rmsk exon 61033703 61034450 5164 - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0201"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "1"; repStart "-13"; chr10 rmsk exon 61034451 61034743 2238 - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0201"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr10 rmsk exon 61034734 61034772 295 - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0201"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr10 rmsk exon 61034770 61034931 1246 - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0201"; repClass "LTR"; repEnd "7146"; repFamily "ERV1"; repLeft "6986"; repStart "-1480"; chr10 rmsk exon 61034924 61035784 24772 - . gene_id "HERVW_10q21.2a"; transcript_id "HERVW_10q21.2a"; locus "HERVW_10q21.2a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0201"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "5016"; repStart "-2724"; ### HERVW_10q21.2b ### chr10 rmsk gene 61035862 61039913 . - . gene_id "HERVW_10q21.2b"; transcript_id "HERVW_10q21.2b"; locus "HERVW_10q21.2b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0202"; model_cov "3355"; model_pct "38.9"; chr10 rmsk exon 61035862 61038370 24772 - . gene_id "HERVW_10q21.2b"; transcript_id "HERVW_10q21.2b"; locus "HERVW_10q21.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0202"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "3317"; repStart "-2724"; chr10 rmsk exon 61038356 61039077 5054 - . gene_id "HERVW_10q21.2b"; transcript_id "HERVW_10q21.2b"; locus "HERVW_10q21.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0202"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1318"; repStart "-6612"; chr10 rmsk exon 61039079 61039153 574 - . gene_id "HERVW_10q21.2b"; transcript_id "HERVW_10q21.2b"; locus "HERVW_10q21.2b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0202"; repClass "LTR"; repEnd "75"; repFamily "ERV1"; repLeft "1"; repStart "-8551"; chr10 rmsk exon 61039154 61039913 5337 - . gene_id "HERVW_10q21.2b"; transcript_id "HERVW_10q21.2b"; locus "HERVW_10q21.2b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0202"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_10q21.2a ### chr10 rmsk gene 61230768 61233752 . + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0488"; model_cov "2439"; model_pct "37.0"; chr10 rmsk exon 61230768 61230877 764 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "-1198"; repFamily "ERV1"; repLeft "-7796"; repStart "-1310"; chr10 rmsk exon 61230874 61231041 1442 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "2203"; repFamily "ERV1"; repLeft "-4395"; repStart "2087"; chr10 rmsk exon 61231067 61231267 1442 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "2387"; repFamily "ERV1"; repLeft "-4211"; repStart "2204"; chr10 rmsk exon 61231265 61231925 3958 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1803"; chr10 rmsk exon 61232170 61232499 2627 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "3050"; repFamily "ERV1"; repLeft "-3548"; repStart "2737"; chr10 rmsk exon 61232797 61233043 2627 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-3268"; repStart "3051"; chr10 rmsk exon 61233036 61233752 4560 + . gene_id "MER4_10q21.2a"; transcript_id "MER4_10q21.2a"; locus "MER4_10q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0488"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "-1936"; repStart "3918"; ### MER4_10q21.2b ### chr10 rmsk gene 61233787 61235423 . + . gene_id "MER4_10q21.2b"; transcript_id "MER4_10q21.2b"; locus "MER4_10q21.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0489"; model_cov "1056"; model_pct "16.0"; chr10 rmsk exon 61233787 61233825 251 + . gene_id "MER4_10q21.2b"; transcript_id "MER4_10q21.2b"; locus "MER4_10q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0489"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "-1936"; repStart "4624"; chr10 rmsk exon 61233972 61234959 5610 + . gene_id "MER4_10q21.2b"; transcript_id "MER4_10q21.2b"; locus "MER4_10q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0489"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5580"; chr10 rmsk exon 61234962 61235423 3223 + . gene_id "MER4_10q21.2b"; transcript_id "MER4_10q21.2b"; locus "MER4_10q21.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0489"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10q21.2a ### chr10 rmsk gene 61241817 61245921 . - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1838"; model_cov "2989"; model_pct "57.2"; chr10 rmsk exon 61241817 61242392 2122 - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1838"; repClass "LTR"; repEnd "3395"; repFamily "ERVL"; repLeft "2848"; repStart "-1831"; chr10 rmsk exon 61242683 61243095 2122 - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1838"; repClass "LTR"; repEnd "2847"; repFamily "ERVL"; repLeft "2397"; repStart "-2379"; chr10 rmsk exon 61243372 61243544 2122 - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1838"; repClass "LTR"; repEnd "2396"; repFamily "ERVL"; repLeft "2223"; repStart "-2830"; chr10 rmsk exon 61243546 61245360 3538 - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1838"; repClass "LTR"; repEnd "2106"; repFamily "ERVL"; repLeft "287"; repStart "-3120"; chr10 rmsk exon 61245504 61245921 1499 - . gene_id "ERV316A3_10q21.2a"; transcript_id "ERV316A3_10q21.2a"; locus "ERV316A3_10q21.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1838"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "12"; repStart "0"; ### PABLB_10q21.2 ### chr10 rmsk gene 61541360 61547801 . + . gene_id "PABLB_10q21.2"; transcript_id "PABLB_10q21.2"; locus "PABLB_10q21.2"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0065"; model_cov "2298"; model_pct "32.3"; chr10 rmsk exon 61541360 61541656 628 + . gene_id "PABLB_10q21.2"; transcript_id "PABLB_10q21.2"; locus "PABLB_10q21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0065"; repClass "LTR"; repEnd "1707"; repFamily "ERV1"; repLeft "-5415"; repStart "1407"; chr10 rmsk exon 61543550 61544277 739 + . gene_id "PABLB_10q21.2"; transcript_id "PABLB_10q21.2"; locus "PABLB_10q21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0065"; repClass "LTR"; repEnd "2981"; repFamily "ERV1"; repLeft "-4141"; repStart "1548"; chr10 rmsk exon 61545503 61546312 762 + . gene_id "PABLB_10q21.2"; transcript_id "PABLB_10q21.2"; locus "PABLB_10q21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0065"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "-1964"; repStart "4675"; chr10 rmsk exon 61547720 61547801 270 + . gene_id "PABLB_10q21.2"; transcript_id "PABLB_10q21.2"; locus "PABLB_10q21.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0065"; repClass "LTR"; repEnd "6528"; repFamily "ERV1"; repLeft "-594"; repStart "6446"; ### HERVL_10q21.2 ### chr10 rmsk gene 61565588 61571867 . - . gene_id "HERVL_10q21.2"; transcript_id "HERVL_10q21.2"; locus "HERVL_10q21.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0855"; model_cov "5650"; model_pct "99.9"; chr10 rmsk exon 61565588 61566017 3075 - . gene_id "HERVL_10q21.2"; transcript_id "HERVL_10q21.2"; locus "HERVL_10q21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0855"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 61566020 61568973 43473 - . gene_id "HERVL_10q21.2"; transcript_id "HERVL_10q21.2"; locus "HERVL_10q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0855"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "2702"; repStart "-2"; chr10 rmsk exon 61569216 61571867 43473 - . gene_id "HERVL_10q21.2"; transcript_id "HERVL_10q21.2"; locus "HERVL_10q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0855"; repClass "LTR"; repEnd "2701"; repFamily "ERVL"; repLeft "1"; repStart "-2953"; ### ERV316A3_10q21.2b ### chr10 rmsk gene 61803476 61805156 . - . gene_id "ERV316A3_10q21.2b"; transcript_id "ERV316A3_10q21.2b"; locus "ERV316A3_10q21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1840"; model_cov "1665"; model_pct "31.9"; chr10 rmsk exon 61803476 61805156 2698 - . gene_id "ERV316A3_10q21.2b"; transcript_id "ERV316A3_10q21.2b"; locus "ERV316A3_10q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1840"; repClass "LTR"; repEnd "3838"; repFamily "ERVL"; repLeft "2173"; repStart "-1388"; ### ERVLB4_10q21.2 ### chr10 rmsk gene 61805154 61807714 . + . gene_id "ERVLB4_10q21.2"; transcript_id "ERVLB4_10q21.2"; locus "ERVLB4_10q21.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1116"; model_cov "2234"; model_pct "39.1"; chr10 rmsk exon 61805154 61805758 3220 + . gene_id "ERVLB4_10q21.2"; transcript_id "ERVLB4_10q21.2"; locus "ERVLB4_10q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1116"; repClass "LTR"; repEnd "3998"; repFamily "ERVL"; repLeft "-1716"; repStart "3400"; chr10 rmsk exon 61805775 61807358 8312 + . gene_id "ERVLB4_10q21.2"; transcript_id "ERVLB4_10q21.2"; locus "ERVLB4_10q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1116"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4078"; chr10 rmsk exon 61807359 61807686 1992 + . gene_id "ERVLB4_10q21.2"; transcript_id "ERVLB4_10q21.2"; locus "ERVLB4_10q21.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1116"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "-185"; repStart "1"; chr10 rmsk exon 61807674 61807714 270 + . gene_id "ERVLB4_10q21.2"; transcript_id "ERVLB4_10q21.2"; locus "ERVLB4_10q21.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1116"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "480"; ### MER41_10q21.2 ### chr10 rmsk gene 62339890 62344894 . - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0347"; model_cov "5058"; model_pct "85.1"; chr10 rmsk exon 62339890 62340394 3162 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0347"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr10 rmsk exon 62340396 62342720 12270 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0347"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "2879"; repStart "-3"; chr10 rmsk exon 62343015 62343589 2750 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0347"; repClass "LTR"; repEnd "2684"; repFamily "ERV1"; repLeft "1895"; repStart "-3262"; chr10 rmsk exon 62343606 62343745 778 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0347"; repClass "LTR"; repEnd "1031"; repFamily "ERV1"; repLeft "885"; repStart "-4915"; chr10 rmsk exon 62343745 62344094 2046 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0347"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "1392"; repStart "-4184"; chr10 rmsk exon 62344096 62344776 4308 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0347"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr10 rmsk exon 62344781 62344894 833 - . gene_id "MER41_10q21.2"; transcript_id "MER41_10q21.2"; locus "MER41_10q21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0347"; repClass "LTR"; repEnd "627"; repFamily "ERV1"; repLeft "514"; repStart "-7"; ### ERVL_10q21.2 ### chr10 rmsk gene 62356338 62360585 . + . gene_id "ERVL_10q21.2"; transcript_id "ERVL_10q21.2"; locus "ERVL_10q21.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0287"; model_cov "3393"; model_pct "58.9"; chr10 rmsk exon 62356338 62358148 19352 + . gene_id "ERVL_10q21.2"; transcript_id "ERVL_10q21.2"; locus "ERVL_10q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0287"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "-1562"; repStart "2363"; chr10 rmsk exon 62358515 62360047 19352 + . gene_id "ERVL_10q21.2"; transcript_id "ERVL_10q21.2"; locus "ERVL_10q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0287"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4196"; chr10 rmsk exon 62360048 62360585 2817 + . gene_id "ERVL_10q21.2"; transcript_id "ERVL_10q21.2"; locus "ERVL_10q21.2"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0287"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-35"; repStart "-12"; ### ERVLE_10q21.2 ### chr10 rmsk gene 62421204 62423037 . + . gene_id "ERVLE_10q21.2"; transcript_id "ERVLE_10q21.2"; locus "ERVLE_10q21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2406"; model_cov "1832"; model_pct "32.3"; chr10 rmsk exon 62421204 62421849 1419 + . gene_id "ERVLE_10q21.2"; transcript_id "ERVLE_10q21.2"; locus "ERVLE_10q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2406"; repClass "LTR"; repEnd "2357"; repFamily "ERVL"; repLeft "-3310"; repStart "1693"; chr10 rmsk exon 62421893 62423037 3018 + . gene_id "ERVLE_10q21.2"; transcript_id "ERVLE_10q21.2"; locus "ERVLE_10q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2406"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "-2055"; repStart "2444"; ### MER4B_10q21.3 ### chr10 rmsk gene 63366574 63368220 . + . gene_id "MER4B_10q21.3"; transcript_id "MER4B_10q21.3"; locus "MER4B_10q21.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0282"; model_cov "733"; model_pct "10.8"; chr10 rmsk exon 63366574 63366724 601 + . gene_id "MER4B_10q21.3"; transcript_id "MER4B_10q21.3"; locus "MER4B_10q21.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0282"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "-3531"; repStart "3073"; chr10 rmsk exon 63366721 63366926 656 + . gene_id "MER4B_10q21.3"; transcript_id "MER4B_10q21.3"; locus "MER4B_10q21.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0282"; repClass "LTR"; repEnd "3356"; repFamily "ERV1"; repLeft "-3402"; repStart "3158"; chr10 rmsk exon 63368140 63368220 753 + . gene_id "MER4B_10q21.3"; transcript_id "MER4B_10q21.3"; locus "MER4B_10q21.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0282"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "-1799"; repStart "4578"; ### HML3_10q21.3 ### chr10 rmsk gene 63847430 63851681 . + . gene_id "HML3_10q21.3"; transcript_id "HML3_10q21.3"; locus "HML3_10q21.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0159"; model_cov "3743"; model_pct "62.2"; chr10 rmsk exon 63847430 63847940 4579 + . gene_id "HML3_10q21.3"; transcript_id "HML3_10q21.3"; locus "HML3_10q21.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0159"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr10 rmsk exon 63847945 63850729 23785 + . gene_id "HML3_10q21.3"; transcript_id "HML3_10q21.3"; locus "HML3_10q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0159"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "5"; chr10 rmsk exon 63850730 63851681 7855 + . gene_id "HML3_10q21.3"; transcript_id "HML3_10q21.3"; locus "HML3_10q21.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0159"; repClass "LTR"; repEnd "4673"; repFamily "ERVK"; repLeft "-1348"; repStart "3723"; ### HERVFRD_10q21.3 ### chr10 rmsk gene 63985474 63991294 . + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0121"; model_cov "3759"; model_pct "52.2"; chr10 rmsk exon 63985474 63986196 3543 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0121"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; chr10 rmsk exon 63986198 63987865 9765 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0121"; repClass "LTR"; repEnd "1732"; repFamily "ERV1"; repLeft "-5473"; repStart "1"; chr10 rmsk exon 63987864 63988187 1285 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0121"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "1555"; chr10 rmsk exon 63988180 63989587 3947 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0121"; repClass "LTR"; repEnd "4114"; repFamily "ERV1"; repLeft "-3091"; repStart "3395"; chr10 rmsk exon 63989577 63990589 6909 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0121"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "-9"; repStart "6182"; chr10 rmsk exon 63990590 63991294 3590 + . gene_id "HERVFRD_10q21.3"; transcript_id "HERVFRD_10q21.3"; locus "HERVFRD_10q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0121"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "-14"; repStart "1"; ### ERV316A3_10q21.3 ### chr10 rmsk gene 64387510 64388470 . - . gene_id "ERV316A3_10q21.3"; transcript_id "ERV316A3_10q21.3"; locus "ERV316A3_10q21.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1843"; model_cov "645"; model_pct "12.3"; chr10 rmsk exon 64387510 64387910 933 - . gene_id "ERV316A3_10q21.3"; transcript_id "ERV316A3_10q21.3"; locus "ERV316A3_10q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1843"; repClass "LTR"; repEnd "598"; repFamily "ERVL"; repLeft "171"; repStart "-4628"; chr10 rmsk exon 64387885 64388083 445 - . gene_id "ERV316A3_10q21.3"; transcript_id "ERV316A3_10q21.3"; locus "ERV316A3_10q21.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1843"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "231"; repStart "-4777"; chr10 rmsk exon 64388084 64388470 1219 - . gene_id "ERV316A3_10q21.3"; transcript_id "ERV316A3_10q21.3"; locus "ERV316A3_10q21.3"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1843"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERV9_10q21.3 ### chr10 rmsk gene 64779896 64785347 . - . gene_id "HERV9_10q21.3"; transcript_id "HERV9_10q21.3"; locus "HERV9_10q21.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0126"; model_cov "4461"; model_pct "52.9"; chr10 rmsk exon 64779896 64784327 36385 - . gene_id "HERV9_10q21.3"; transcript_id "HERV9_10q21.3"; locus "HERV9_10q21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0126"; repClass "LTR"; repEnd "4504"; repFamily "ERV1"; repLeft "43"; repStart "-3932"; chr10 rmsk exon 64784344 64785347 5430 - . gene_id "HERV9_10q21.3"; transcript_id "HERV9_10q21.3"; locus "HERV9_10q21.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0126"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_10q21.3a ### chr10 rmsk gene 64801100 64804283 . - . gene_id "ERVLB4_10q21.3a"; transcript_id "ERVLB4_10q21.3a"; locus "ERVLB4_10q21.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1119"; model_cov "2859"; model_pct "50.0"; chr10 rmsk exon 64801100 64801414 1598 - . gene_id "ERVLB4_10q21.3a"; transcript_id "ERVLB4_10q21.3a"; locus "ERVLB4_10q21.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1119"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "1"; repStart "-198"; chr10 rmsk exon 64801418 64803498 11316 - . gene_id "ERVLB4_10q21.3a"; transcript_id "ERVLB4_10q21.3a"; locus "ERVLB4_10q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1119"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "3663"; repStart "-3"; chr10 rmsk exon 64803499 64804283 3935 - . gene_id "ERVLB4_10q21.3a"; transcript_id "ERVLB4_10q21.3a"; locus "ERVLB4_10q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1119"; repClass "LTR"; repEnd "2443"; repFamily "ERVL"; repLeft "1632"; repStart "-3271"; ### ERVLB4_10q21.3b ### chr10 rmsk gene 64810969 64813272 . - . gene_id "ERVLB4_10q21.3b"; transcript_id "ERVLB4_10q21.3b"; locus "ERVLB4_10q21.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1120"; model_cov "1405"; model_pct "24.6"; chr10 rmsk exon 64810969 64811927 5128 - . gene_id "ERVLB4_10q21.3b"; transcript_id "ERVLB4_10q21.3b"; locus "ERVLB4_10q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1120"; repClass "LTR"; repEnd "1632"; repFamily "ERVL"; repLeft "669"; repStart "-4082"; chr10 rmsk exon 64812004 64812445 2651 - . gene_id "ERVLB4_10q21.3b"; transcript_id "ERVLB4_10q21.3b"; locus "ERVLB4_10q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1120"; repClass "LTR"; repEnd "721"; repFamily "ERVL"; repLeft "279"; repStart "-4993"; chr10 rmsk exon 64812834 64813272 1520 - . gene_id "ERVLB4_10q21.3b"; transcript_id "ERVLB4_10q21.3b"; locus "ERVLB4_10q21.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1120"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "1"; repStart "-80"; ### HERVL_10q21.3a ### chr10 rmsk gene 64888022 64893215 . + . gene_id "HERVL_10q21.3a"; transcript_id "HERVL_10q21.3a"; locus "HERVL_10q21.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0857"; model_cov "4264"; model_pct "75.4"; chr10 rmsk exon 64888022 64890115 28774 + . gene_id "HERVL_10q21.3a"; transcript_id "HERVL_10q21.3a"; locus "HERVL_10q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0857"; repClass "LTR"; repEnd "3245"; repFamily "ERVL"; repLeft "-2409"; repStart "1084"; chr10 rmsk exon 64890411 64892401 28774 + . gene_id "HERVL_10q21.3a"; transcript_id "HERVL_10q21.3a"; locus "HERVL_10q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0857"; repClass "LTR"; repEnd "5246"; repFamily "ERVL"; repLeft "-408"; repStart "3246"; chr10 rmsk exon 64892480 64892583 656 + . gene_id "HERVL_10q21.3a"; transcript_id "HERVL_10q21.3a"; locus "HERVL_10q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0857"; repClass "LTR"; repEnd "5428"; repFamily "ERVL"; repLeft "-226"; repStart "5325"; chr10 rmsk exon 64892655 64893215 2012 + . gene_id "HERVL_10q21.3a"; transcript_id "HERVL_10q21.3a"; locus "HERVL_10q21.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0857"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLE_10q21.3a ### chr10 rmsk gene 64998282 64999946 . + . gene_id "ERVLE_10q21.3a"; transcript_id "ERVLE_10q21.3a"; locus "ERVLE_10q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2411"; model_cov "1408"; model_pct "24.8"; chr10 rmsk exon 64998282 64998735 445 + . gene_id "ERVLE_10q21.3a"; transcript_id "ERVLE_10q21.3a"; locus "ERVLE_10q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2411"; repClass "LTR"; repEnd "3346"; repFamily "ERVL"; repLeft "-2321"; repStart "2849"; chr10 rmsk exon 64998963 64999671 817 + . gene_id "ERVLE_10q21.3a"; transcript_id "ERVLE_10q21.3a"; locus "ERVLE_10q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2411"; repClass "LTR"; repEnd "3759"; repFamily "ERVL"; repLeft "-1908"; repStart "3146"; chr10 rmsk exon 64999668 64999946 398 + . gene_id "ERVLE_10q21.3a"; transcript_id "ERVLE_10q21.3a"; locus "ERVLE_10q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2411"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1877"; repStart "3492"; ### ERVLB4_10q21.3c ### chr10 rmsk gene 65094070 65095497 . + . gene_id "ERVLB4_10q21.3c"; transcript_id "ERVLB4_10q21.3c"; locus "ERVLB4_10q21.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1122"; model_cov "945"; model_pct "16.5"; chr10 rmsk exon 65094070 65094441 532 + . gene_id "ERVLB4_10q21.3c"; transcript_id "ERVLB4_10q21.3c"; locus "ERVLB4_10q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1122"; repClass "LTR"; repEnd "3091"; repFamily "ERVL"; repLeft "-2623"; repStart "2713"; chr10 rmsk exon 65094829 65095178 429 + . gene_id "ERVLB4_10q21.3c"; transcript_id "ERVLB4_10q21.3c"; locus "ERVLB4_10q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1122"; repClass "LTR"; repEnd "4251"; repFamily "ERVL"; repLeft "-1463"; repStart "3899"; chr10 rmsk exon 65095262 65095390 316 + . gene_id "ERVLB4_10q21.3c"; transcript_id "ERVLB4_10q21.3c"; locus "ERVLB4_10q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1122"; repClass "LTR"; repEnd "4535"; repFamily "ERVL"; repLeft "-1179"; repStart "4401"; chr10 rmsk exon 65095417 65095497 267 + . gene_id "ERVLB4_10q21.3c"; transcript_id "ERVLB4_10q21.3c"; locus "ERVLB4_10q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1122"; repClass "LTR"; repEnd "4941"; repFamily "ERVL"; repLeft "-773"; repStart "4860"; ### HERVK11_10q21.3 ### chr10 rmsk gene 65105943 65112846 . - . gene_id "HERVK11_10q21.3"; transcript_id "HERVK11_10q21.3"; locus "HERVK11_10q21.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0061"; model_cov "5555"; model_pct "69.8"; chr10 rmsk exon 65105943 65106795 5893 - . gene_id "HERVK11_10q21.3"; transcript_id "HERVK11_10q21.3"; locus "HERVK11_10q21.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0061"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "189"; repStart "0"; chr10 rmsk exon 65107309 65107496 5893 - . gene_id "HERVK11_10q21.3"; transcript_id "HERVK11_10q21.3"; locus "HERVK11_10q21.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0061"; repClass "LTR"; repEnd "188"; repFamily "ERVK"; repLeft "1"; repStart "-883"; chr10 rmsk exon 65107497 65112846 32063 - . gene_id "HERVK11_10q21.3"; transcript_id "HERVK11_10q21.3"; locus "HERVK11_10q21.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0061"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "2398"; repStart "0"; ### ERVLB4_10q21.3d ### chr10 rmsk gene 65407324 65412620 . + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1123"; model_cov "2318"; model_pct "40.6"; chr10 rmsk exon 65407324 65407626 1073 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-36"; repStart "-77"; chr10 rmsk exon 65407937 65408165 1304 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "240"; repFamily "ERVL"; repLeft "-5474"; repStart "1"; chr10 rmsk exon 65408528 65408717 734 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "3217"; repFamily "ERVL"; repLeft "-2497"; repStart "3031"; chr10 rmsk exon 65408714 65409229 10369 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "4332"; repFamily "ERVL"; repLeft "-1382"; repStart "3818"; chr10 rmsk exon 65410197 65411241 10369 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "5377"; repFamily "ERVL"; repLeft "-337"; repStart "4333"; chr10 rmsk exon 65411275 65411291 10369 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "5385"; repFamily "ERVL"; repLeft "-329"; repStart "5378"; chr10 rmsk exon 65412031 65412356 10369 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5386"; chr10 rmsk exon 65412357 65412620 916 + . gene_id "ERVLB4_10q21.3d"; transcript_id "ERVLB4_10q21.3d"; locus "ERVLB4_10q21.3d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1123"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "-96"; repStart "1"; ### HERVL_10q21.3b ### chr10 rmsk gene 65503563 65509682 . - . gene_id "HERVL_10q21.3b"; transcript_id "HERVL_10q21.3b"; locus "HERVL_10q21.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0858"; model_cov "5652"; model_pct "100.0"; chr10 rmsk exon 65503563 65504007 3274 - . gene_id "HERVL_10q21.3b"; transcript_id "HERVL_10q21.3b"; locus "HERVL_10q21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0858"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 65504008 65509618 43009 - . gene_id "HERVL_10q21.3b"; transcript_id "HERVL_10q21.3b"; locus "HERVL_10q21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0858"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr10 rmsk exon 65509641 65509682 262 - . gene_id "HERVL_10q21.3b"; transcript_id "HERVL_10q21.3b"; locus "HERVL_10q21.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0858"; repClass "LTR"; repEnd "48"; repFamily "ERVL"; repLeft "1"; repStart "-405"; ### MER61_10q21.3 ### chr10 rmsk gene 65570387 65573112 . + . gene_id "MER61_10q21.3"; transcript_id "MER61_10q21.3"; locus "MER61_10q21.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0251"; model_cov "1933"; model_pct "37.1"; chr10 rmsk exon 65570387 65570726 1999 + . gene_id "MER61_10q21.3"; transcript_id "MER61_10q21.3"; locus "MER61_10q21.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0251"; repClass "LTR"; repEnd "337"; repFamily "ERV1"; repLeft "-4"; repStart "1"; chr10 rmsk exon 65570727 65571292 1677 + . gene_id "MER61_10q21.3"; transcript_id "MER61_10q21.3"; locus "MER61_10q21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0251"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-4668"; repStart "1"; chr10 rmsk exon 65571437 65572559 9061 + . gene_id "MER61_10q21.3"; transcript_id "MER61_10q21.3"; locus "MER61_10q21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0251"; repClass "LTR"; repEnd "2906"; repFamily "ERV1"; repLeft "-2311"; repStart "1760"; chr10 rmsk exon 65572876 65573112 9061 + . gene_id "MER61_10q21.3"; transcript_id "MER61_10q21.3"; locus "MER61_10q21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0251"; repClass "LTR"; repEnd "3146"; repFamily "ERV1"; repLeft "-2071"; repStart "2907"; ### LTR57_10q21.3 ### chr10 rmsk gene 65662541 65664180 . + . gene_id "LTR57_10q21.3"; transcript_id "LTR57_10q21.3"; locus "LTR57_10q21.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0116"; model_cov "1290"; model_pct "24.1"; chr10 rmsk exon 65662541 65662938 6516 + . gene_id "LTR57_10q21.3"; transcript_id "LTR57_10q21.3"; locus "LTR57_10q21.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0116"; repClass "LTR"; repEnd "1470"; repFamily "ERVL"; repLeft "-3873"; repStart "303"; chr10 rmsk exon 65664048 65664180 6516 + . gene_id "LTR57_10q21.3"; transcript_id "LTR57_10q21.3"; locus "LTR57_10q21.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0116"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "-3749"; repStart "1471"; ### ERVLB4_10q21.3e ### chr10 rmsk gene 65740034 65743215 . - . gene_id "ERVLB4_10q21.3e"; transcript_id "ERVLB4_10q21.3e"; locus "ERVLB4_10q21.3e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1125"; model_cov "2687"; model_pct "47.0"; chr10 rmsk exon 65740034 65740505 1792 - . gene_id "ERVLB4_10q21.3e"; transcript_id "ERVLB4_10q21.3e"; locus "ERVLB4_10q21.3e"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1125"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "3"; repStart "-57"; chr10 rmsk exon 65740508 65743106 15108 - . gene_id "ERVLB4_10q21.3e"; transcript_id "ERVLB4_10q21.3e"; locus "ERVLB4_10q21.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1125"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3027"; repStart "0"; chr10 rmsk exon 65743150 65743215 227 - . gene_id "ERVLB4_10q21.3e"; transcript_id "ERVLB4_10q21.3e"; locus "ERVLB4_10q21.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1125"; repClass "LTR"; repEnd "67"; repFamily "ERVL"; repLeft "1"; repStart "-489"; ### HARLEQUIN_10q21.3 ### chr10 rmsk gene 67157300 67159393 . + . gene_id "HARLEQUIN_10q21.3"; transcript_id "HARLEQUIN_10q21.3"; locus "HARLEQUIN_10q21.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0125"; model_cov "1607"; model_pct "23.3"; chr10 rmsk exon 67157300 67158911 10203 + . gene_id "HARLEQUIN_10q21.3"; transcript_id "HARLEQUIN_10q21.3"; locus "HARLEQUIN_10q21.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0125"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5289"; chr10 rmsk exon 67158913 67159393 3891 + . gene_id "HARLEQUIN_10q21.3"; transcript_id "HARLEQUIN_10q21.3"; locus "HARLEQUIN_10q21.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0125"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_10q21.3b ### chr10 rmsk gene 67296213 67297896 . - . gene_id "ERVLE_10q21.3b"; transcript_id "ERVLE_10q21.3b"; locus "ERVLE_10q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2413"; model_cov "1395"; model_pct "24.6"; chr10 rmsk exon 67296213 67296651 3551 - . gene_id "ERVLE_10q21.3b"; transcript_id "ERVLE_10q21.3b"; locus "ERVLE_10q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2413"; repClass "LTR"; repEnd "4640"; repFamily "ERVL"; repLeft "4185"; repStart "-1027"; chr10 rmsk exon 67296963 67297816 3551 - . gene_id "ERVLE_10q21.3b"; transcript_id "ERVLE_10q21.3b"; locus "ERVLE_10q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2413"; repClass "LTR"; repEnd "4184"; repFamily "ERVL"; repLeft "3300"; repStart "-1483"; chr10 rmsk exon 67297838 67297896 290 - . gene_id "ERVLE_10q21.3b"; transcript_id "ERVLE_10q21.3b"; locus "ERVLE_10q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2413"; repClass "LTR"; repEnd "3260"; repFamily "ERVL"; repLeft "3204"; repStart "-2407"; ### ERVLE_10q21.3c ### chr10 rmsk gene 67298199 67299702 . - . gene_id "ERVLE_10q21.3c"; transcript_id "ERVLE_10q21.3c"; locus "ERVLE_10q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2414"; model_cov "1052"; model_pct "18.6"; chr10 rmsk exon 67298199 67298928 2000 - . gene_id "ERVLE_10q21.3c"; transcript_id "ERVLE_10q21.3c"; locus "ERVLE_10q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2414"; repClass "LTR"; repEnd "3369"; repFamily "ERVL"; repLeft "2698"; repStart "-2298"; chr10 rmsk exon 67299148 67299370 2000 - . gene_id "ERVLE_10q21.3c"; transcript_id "ERVLE_10q21.3c"; locus "ERVLE_10q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2414"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "2045"; repStart "-3411"; chr10 rmsk exon 67299390 67299702 582 - . gene_id "ERVLE_10q21.3c"; transcript_id "ERVLE_10q21.3c"; locus "ERVLE_10q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2414"; repClass "LTR"; repEnd "1992"; repFamily "ERVL"; repLeft "1822"; repStart "-3675"; ### ERVLB4_10q21.3f ### chr10 rmsk gene 67300265 67302806 . - . gene_id "ERVLB4_10q21.3f"; transcript_id "ERVLB4_10q21.3f"; locus "ERVLB4_10q21.3f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1126"; model_cov "725"; model_pct "12.7"; chr10 rmsk exon 67300265 67300762 653 - . gene_id "ERVLB4_10q21.3f"; transcript_id "ERVLB4_10q21.3f"; locus "ERVLB4_10q21.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1126"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "1011"; repStart "-4199"; chr10 rmsk exon 67302608 67302806 286 - . gene_id "ERVLB4_10q21.3f"; transcript_id "ERVLB4_10q21.3f"; locus "ERVLB4_10q21.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1126"; repClass "LTR"; repEnd "277"; repFamily "ERVL"; repLeft "56"; repStart "-5437"; ### ERVLE_10q21.3d ### chr10 rmsk gene 67393090 67394301 . + . gene_id "ERVLE_10q21.3d"; transcript_id "ERVLE_10q21.3d"; locus "ERVLE_10q21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2415"; model_cov "1251"; model_pct "22.1"; chr10 rmsk exon 67393090 67393202 400 + . gene_id "ERVLE_10q21.3d"; transcript_id "ERVLE_10q21.3d"; locus "ERVLE_10q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2415"; repClass "LTR"; repEnd "4178"; repFamily "ERVL"; repLeft "-1489"; repStart "4064"; chr10 rmsk exon 67393193 67394301 3889 + . gene_id "ERVLE_10q21.3d"; transcript_id "ERVLE_10q21.3d"; locus "ERVLE_10q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2415"; repClass "LTR"; repEnd "5478"; repFamily "ERVL"; repLeft "-189"; repStart "4341"; ### HML3_10q22.1 ### chr10 rmsk gene 68861092 68868584 . - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0160"; model_cov "6146"; model_pct "100.0"; chr10 rmsk exon 68861092 68861545 2909 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "33"; repStart "0"; chr10 rmsk exon 68861553 68863367 3951 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "5944"; repFamily "ERVK"; repLeft "3641"; repStart "-77"; chr10 rmsk exon 68863360 68863413 360 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "4938"; repFamily "ERVK"; repLeft "4885"; repStart "-1083"; chr10 rmsk exon 68863438 68863872 3457 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "4230"; repFamily "ERVK"; repLeft "3791"; repStart "-1791"; chr10 rmsk exon 68863866 68863917 18292 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "3862"; repFamily "ERVK"; repLeft "3820"; repStart "-2159"; chr10 rmsk exon 68864224 68865367 18292 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "3819"; repFamily "ERVK"; repLeft "2676"; repStart "-2202"; chr10 rmsk exon 68865670 68866937 18292 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "2675"; repFamily "ERVK"; repLeft "1391"; repStart "-3346"; chr10 rmsk exon 68867245 68867275 18292 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "1390"; repFamily "ERVK"; repLeft "1360"; repStart "-4631"; chr10 rmsk exon 68867277 68868120 2719 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "-68"; repStart "-5237"; chr10 rmsk exon 68868125 68868584 3020 - . gene_id "HML3_10q22.1"; transcript_id "HML3_10q22.1"; locus "HML3_10q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0160"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "27"; repStart "0"; ### ERV316A3_10q22.1a ### chr10 rmsk gene 69105107 69112780 . + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1846"; model_cov "3862"; model_pct "73.9"; chr10 rmsk exon 69105107 69105436 1113 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "94"; chr10 rmsk exon 69105441 69105872 3680 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "699"; repFamily "ERVL"; repLeft "-4527"; repStart "235"; chr10 rmsk exon 69106180 69106369 3680 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "-4342"; repStart "700"; chr10 rmsk exon 69106677 69107456 3680 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "1426"; repFamily "ERVL"; repLeft "-3800"; repStart "634"; chr10 rmsk exon 69107763 69107903 3062 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "1559"; repFamily "ERVL"; repLeft "-3667"; repStart "1427"; chr10 rmsk exon 69108774 69108884 933 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "2286"; repFamily "ERVL"; repLeft "-2940"; repStart "2169"; chr10 rmsk exon 69109630 69109761 933 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "2412"; repFamily "ERVL"; repLeft "-2814"; repStart "2287"; chr10 rmsk exon 69109879 69109901 933 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "2413"; repFamily "ERVL"; repLeft "-2813"; repStart "2413"; chr10 rmsk exon 69110208 69110358 933 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "2552"; repFamily "ERVL"; repLeft "-2674"; repStart "2413"; chr10 rmsk exon 69110364 69111592 5841 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "4557"; repFamily "ERVL"; repLeft "-669"; repStart "3316"; chr10 rmsk exon 69111730 69112369 4186 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4558"; chr10 rmsk exon 69112467 69112780 1142 + . gene_id "ERV316A3_10q22.1a"; transcript_id "ERV316A3_10q22.1a"; locus "ERV316A3_10q22.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1846"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-8"; repStart "122"; ### ERV316A3_10q22.1b ### chr10 rmsk gene 69585879 69587677 . + . gene_id "ERV316A3_10q22.1b"; transcript_id "ERV316A3_10q22.1b"; locus "ERV316A3_10q22.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1847"; model_cov "930"; model_pct "17.8"; chr10 rmsk exon 69585879 69586807 2187 + . gene_id "ERV316A3_10q22.1b"; transcript_id "ERV316A3_10q22.1b"; locus "ERV316A3_10q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1847"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "4250"; chr10 rmsk exon 69586856 69586910 1614 + . gene_id "ERV316A3_10q22.1b"; transcript_id "ERV316A3_10q22.1b"; locus "ERV316A3_10q22.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1847"; repClass "LTR"; repEnd "57"; repFamily "ERVL"; repLeft "-394"; repStart "1"; chr10 rmsk exon 69587298 69587677 1614 + . gene_id "ERV316A3_10q22.1b"; transcript_id "ERV316A3_10q22.1b"; locus "ERV316A3_10q22.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1847"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "58"; ### HERVL18_10q22.1 ### chr10 rmsk gene 70648593 70652094 . + . gene_id "HERVL18_10q22.1"; transcript_id "HERVL18_10q22.1"; locus "HERVL18_10q22.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0103"; model_cov "2229"; model_pct "36.9"; chr10 rmsk exon 70648593 70648944 2302 + . gene_id "HERVL18_10q22.1"; transcript_id "HERVL18_10q22.1"; locus "HERVL18_10q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0103"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 70648958 70651752 13145 + . gene_id "HERVL18_10q22.1"; transcript_id "HERVL18_10q22.1"; locus "HERVL18_10q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0103"; repClass "LTR"; repEnd "2237"; repFamily "ERVL"; repLeft "-3810"; repStart "8"; chr10 rmsk exon 70651754 70652094 2450 + . gene_id "HERVL18_10q22.1"; transcript_id "HERVL18_10q22.1"; locus "HERVL18_10q22.1"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0103"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_10q22.1 ### chr10 rmsk gene 71016728 71023071 . - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0861"; model_cov "5806"; model_pct "100.0"; chr10 rmsk exon 71016728 71017230 2822 - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0861"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 71017231 71021414 32402 - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0861"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1446"; repStart "0"; chr10 rmsk exon 71021418 71021571 1103 - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0861"; repClass "LTR"; repEnd "945"; repFamily "ERVL"; repLeft "791"; repStart "-4709"; chr10 rmsk exon 71021572 71022992 10821 - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0861"; repClass "LTR"; repEnd "1445"; repFamily "ERVL"; repLeft "1"; repStart "-4209"; chr10 rmsk exon 71022993 71023071 318 - . gene_id "HERVL_10q22.1"; transcript_id "HERVL_10q22.1"; locus "HERVL_10q22.1"; repName "MLT2B5"; geneRegion "ltr"; locid "HERVL-int_0861"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "644"; repStart "0"; ### ERVLE_10q22.1 ### chr10 rmsk gene 71141729 71143479 . - . gene_id "ERVLE_10q22.1"; transcript_id "ERVLE_10q22.1"; locus "ERVLE_10q22.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2416"; model_cov "1525"; model_pct "26.9"; chr10 rmsk exon 71141729 71142314 917 - . gene_id "ERVLE_10q22.1"; transcript_id "ERVLE_10q22.1"; locus "ERVLE_10q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2416"; repClass "LTR"; repEnd "4944"; repFamily "ERVL"; repLeft "4313"; repStart "-723"; chr10 rmsk exon 71142435 71142975 1042 - . gene_id "ERVLE_10q22.1"; transcript_id "ERVLE_10q22.1"; locus "ERVLE_10q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2416"; repClass "LTR"; repEnd "4167"; repFamily "ERVL"; repLeft "3580"; repStart "-1500"; chr10 rmsk exon 71143172 71143479 441 - . gene_id "ERVLE_10q22.1"; transcript_id "ERVLE_10q22.1"; locus "ERVLE_10q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2416"; repClass "LTR"; repEnd "3300"; repFamily "ERVL"; repLeft "2993"; repStart "-2367"; ### PABLA_10q22.1 ### chr10 rmsk gene 71916717 71919974 . - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0096"; model_cov "2557"; model_pct "51.0"; chr10 rmsk exon 71916717 71918318 7335 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "4211"; repFamily "ERV1"; repLeft "2545"; repStart "-804"; chr10 rmsk exon 71918616 71918726 4922 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "2028"; repFamily "ERV1"; repLeft "1922"; repStart "-2987"; chr10 rmsk exon 71919021 71919032 4922 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "1921"; repFamily "ERV1"; repLeft "1910"; repStart "-3094"; chr10 rmsk exon 71919084 71919160 552 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "537"; repFamily "ERV1"; repLeft "461"; repStart "-4478"; chr10 rmsk exon 71919162 71919652 3320 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "-241"; repFamily "ERV1"; repLeft "-727"; repStart "-5256"; chr10 rmsk exon 71919771 71919974 1275 - . gene_id "PABLA_10q22.1"; transcript_id "PABLA_10q22.1"; locus "PABLA_10q22.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0096"; repClass "LTR"; repEnd "-2528"; repFamily "ERV1"; repLeft "-2740"; repStart "-7543"; ### HARLEQUIN_10q22.1 ### chr10 rmsk gene 71939378 71946508 . + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0126"; model_cov "5785"; model_pct "83.9"; chr10 rmsk exon 71939378 71939838 2302 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr10 rmsk exon 71939839 71943821 19443 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "-2947"; repStart "1"; chr10 rmsk exon 71943802 71944128 1901 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "-2917"; repStart "3644"; chr10 rmsk exon 71944124 71944227 688 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "4171"; repFamily "ERV1"; repLeft "-2725"; repStart "4069"; chr10 rmsk exon 71944214 71945227 5861 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "6381"; repFamily "ERV1"; repLeft "-515"; repStart "5492"; chr10 rmsk exon 71945534 71946039 5861 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "6893"; repFamily "ERV1"; repLeft "-3"; repStart "6382"; chr10 rmsk exon 71946042 71946508 2327 + . gene_id "HARLEQUIN_10q22.1"; transcript_id "HARLEQUIN_10q22.1"; locus "HARLEQUIN_10q22.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFH21_10q22.1a ### chr10 rmsk gene 71949058 71955165 . - . gene_id "HERVFH21_10q22.1a"; transcript_id "HERVFH21_10q22.1a"; locus "HERVFH21_10q22.1a"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0023"; model_cov "6016"; model_pct "92.1"; chr10 rmsk exon 71949058 71949454 1153 - . gene_id "HERVFH21_10q22.1a"; transcript_id "HERVFH21_10q22.1a"; locus "HERVFH21_10q22.1a"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0023"; repClass "LTR"; repEnd "479"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 71949455 71951421 7232 - . gene_id "HERVFH21_10q22.1a"; transcript_id "HERVFH21_10q22.1a"; locus "HERVFH21_10q22.1a"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0023"; repClass "LTR"; repEnd "6278"; repFamily "ERV1"; repLeft "3555"; repStart "-251"; chr10 rmsk exon 71951584 71954374 13384 - . gene_id "HERVFH21_10q22.1a"; transcript_id "HERVFH21_10q22.1a"; locus "HERVFH21_10q22.1a"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0023"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "1869"; repStart "-1845"; chr10 rmsk exon 71954674 71955165 13384 - . gene_id "HERVFH21_10q22.1a"; transcript_id "HERVFH21_10q22.1a"; locus "HERVFH21_10q22.1a"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0023"; repClass "LTR"; repEnd "2613"; repFamily "ERV1"; repLeft "2135"; repStart "-3916"; ### HML1_10q22.1 ### chr10 rmsk gene 71955167 71961407 . + . gene_id "HML1_10q22.1"; transcript_id "HML1_10q22.1"; locus "HML1_10q22.1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0071"; model_cov "4419"; model_pct "72.5"; chr10 rmsk exon 71955167 71955757 3045 + . gene_id "HML1_10q22.1"; transcript_id "HML1_10q22.1"; locus "HML1_10q22.1"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0071"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "8"; chr10 rmsk exon 71955758 71955958 30563 + . gene_id "HML1_10q22.1"; transcript_id "HML1_10q22.1"; locus "HML1_10q22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0071"; repClass "LTR"; repEnd "184"; repFamily "ERVK"; repLeft "-5912"; repStart "1"; chr10 rmsk exon 71957210 71961280 30563 + . gene_id "HML1_10q22.1"; transcript_id "HML1_10q22.1"; locus "HML1_10q22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0071"; repClass "LTR"; repEnd "4309"; repFamily "ERVK"; repLeft "-1787"; repStart "185"; chr10 rmsk exon 71961270 71961407 813 + . gene_id "HML1_10q22.1"; transcript_id "HML1_10q22.1"; locus "HML1_10q22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0071"; repClass "LTR"; repEnd "5143"; repFamily "ERVK"; repLeft "-953"; repStart "5031"; ### HERVFH21_10q22.1b ### chr10 rmsk gene 71961542 71963199 . - . gene_id "HERVFH21_10q22.1b"; transcript_id "HERVFH21_10q22.1b"; locus "HERVFH21_10q22.1b"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0024"; model_cov "1147"; model_pct "17.6"; chr10 rmsk exon 71961542 71962659 4916 - . gene_id "HERVFH21_10q22.1b"; transcript_id "HERVFH21_10q22.1b"; locus "HERVFH21_10q22.1b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0024"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "341"; repStart "-5148"; chr10 rmsk exon 71962690 71962801 427 - . gene_id "HERVFH21_10q22.1b"; transcript_id "HERVFH21_10q22.1b"; locus "HERVFH21_10q22.1b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0024"; repClass "LTR"; repEnd "108"; repFamily "ERV1"; repLeft "1"; repStart "-6421"; chr10 rmsk exon 71962802 71963199 1023 - . gene_id "HERVFH21_10q22.1b"; transcript_id "HERVFH21_10q22.1b"; locus "HERVFH21_10q22.1b"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0024"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_10q22.2 ### chr10 rmsk gene 74773653 74775645 . - . gene_id "MER4_10q22.2"; transcript_id "MER4_10q22.2"; locus "MER4_10q22.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0494"; model_cov "1561"; model_pct "23.7"; chr10 rmsk exon 74773653 74774108 3534 - . gene_id "MER4_10q22.2"; transcript_id "MER4_10q22.2"; locus "MER4_10q22.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0494"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 74774118 74775645 10034 - . gene_id "MER4_10q22.2"; transcript_id "MER4_10q22.2"; locus "MER4_10q22.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0494"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5035"; repStart "-2"; ### PRIMA41_10q22.2 ### chr10 rmsk gene 74775646 74783112 . + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0087"; model_cov "4589"; model_pct "59.2"; chr10 rmsk exon 74775646 74775698 2236 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "268"; repFamily "ERV1"; repLeft "-253"; repStart "216"; chr10 rmsk exon 74775998 74776258 2236 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "269"; chr10 rmsk exon 74776261 74776334 257 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "1912"; repFamily "ERV1"; repLeft "-5844"; repStart "1813"; chr10 rmsk exon 74776344 74776836 3674 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-7238"; repStart "1"; chr10 rmsk exon 74776832 74777349 9158 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "1170"; repFamily "ERV1"; repLeft "-6586"; repStart "647"; chr10 rmsk exon 74777652 74778494 16240 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "2029"; repFamily "ERV1"; repLeft "-5727"; repStart "1171"; chr10 rmsk exon 74779115 74779872 16240 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "2771"; repFamily "ERV1"; repLeft "-4985"; repStart "2030"; chr10 rmsk exon 74780179 74780434 16240 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "2772"; chr10 rmsk exon 74780430 74780484 1725 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "4438"; repFamily "ERV1"; repLeft "-3318"; repStart "4394"; chr10 rmsk exon 74780794 74780980 1725 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "4622"; repFamily "ERV1"; repLeft "-3134"; repStart "4439"; chr10 rmsk exon 74780985 74781745 8403 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "5906"; repFamily "ERV1"; repLeft "-1850"; repStart "5144"; chr10 rmsk exon 74782050 74782401 8403 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "6270"; repFamily "ERV1"; repLeft "-1486"; repStart "5907"; chr10 rmsk exon 74782394 74782602 1463 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "7540"; chr10 rmsk exon 74782603 74783112 4023 + . gene_id "PRIMA41_10q22.2"; transcript_id "PRIMA41_10q22.2"; locus "PRIMA41_10q22.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0087"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_10q22.3a ### chr10 rmsk gene 76818221 76823736 . + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0813"; model_cov "4278"; model_pct "55.5"; chr10 rmsk exon 76818221 76818660 3522 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 76818711 76821994 16034 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr10 rmsk exon 76821974 76822114 782 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-4429"; repStart "3140"; chr10 rmsk exon 76822121 76822263 881 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "-4069"; repStart "3502"; chr10 rmsk exon 76822266 76822672 2440 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4743"; chr10 rmsk exon 76822717 76822916 1274 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5616"; chr10 rmsk exon 76822917 76823295 2304 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr10 rmsk exon 76823296 76823736 3619 + . gene_id "HERVH_10q22.3a"; transcript_id "HERVH_10q22.3a"; locus "HERVH_10q22.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0813"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_10q22.3 ### chr10 rmsk gene 77741804 77742493 . - . gene_id "ERVLE_10q22.3"; transcript_id "ERVLE_10q22.3"; locus "ERVLE_10q22.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2418"; model_cov "835"; model_pct "14.7"; chr10 rmsk exon 77741804 77742493 2507 - . gene_id "ERVLE_10q22.3"; transcript_id "ERVLE_10q22.3"; locus "ERVLE_10q22.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2418"; repClass "LTR"; repEnd "4483"; repFamily "ERVL"; repLeft "3648"; repStart "-1184"; ### ERV316A3_10q22.3a ### chr10 rmsk gene 78150486 78158609 . - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1849"; model_cov "4192"; model_pct "80.2"; chr10 rmsk exon 78150486 78150933 1135 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr10 rmsk exon 78151062 78151441 613 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4442"; repStart "-390"; chr10 rmsk exon 78151448 78152495 5583 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "2964"; repStart "-1224"; chr10 rmsk exon 78152871 78153649 5583 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "2963"; repFamily "ERVL"; repLeft "2175"; repStart "-2263"; chr10 rmsk exon 78153940 78154633 5583 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "2174"; repFamily "ERVL"; repLeft "1495"; repStart "-3052"; chr10 rmsk exon 78154856 78155178 5583 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "1494"; repFamily "ERVL"; repLeft "1176"; repStart "-3732"; chr10 rmsk exon 78157211 78158186 1839 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "1302"; repFamily "ERVL"; repLeft "327"; repStart "-3924"; chr10 rmsk exon 78158255 78158609 1174 - . gene_id "ERV316A3_10q22.3a"; transcript_id "ERV316A3_10q22.3a"; locus "ERV316A3_10q22.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1849"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "83"; repStart "0"; ### ERVL_10q22.3 ### chr10 rmsk gene 78638226 78639281 . - . gene_id "ERVL_10q22.3"; transcript_id "ERVL_10q22.3"; locus "ERVL_10q22.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0289"; model_cov "1112"; model_pct "19.3"; chr10 rmsk exon 78638226 78639281 5193 - . gene_id "ERVL_10q22.3"; transcript_id "ERVL_10q22.3"; locus "ERVL_10q22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0289"; repClass "LTR"; repEnd "5752"; repFamily "ERVL"; repLeft "4640"; repStart "-5"; ### ERV316A3_10q22.3b ### chr10 rmsk gene 78822312 78828476 . - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1850"; model_cov "4833"; model_pct "92.5"; chr10 rmsk exon 78822312 78822739 1528 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 78822740 78825167 5612 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "2800"; repStart "0"; chr10 rmsk exon 78825465 78826233 1342 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "1821"; repStart "-2624"; chr10 rmsk exon 78826270 78826500 464 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "2090"; repFamily "ERVL"; repLeft "1859"; repStart "-3136"; chr10 rmsk exon 78826609 78827196 1461 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "1779"; repFamily "ERVL"; repLeft "1151"; repStart "-3447"; chr10 rmsk exon 78827306 78828067 880 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "1004"; repFamily "ERVL"; repLeft "237"; repStart "-4222"; chr10 rmsk exon 78828086 78828476 897 - . gene_id "ERV316A3_10q22.3b"; transcript_id "ERV316A3_10q22.3b"; locus "ERV316A3_10q22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1850"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERV316A3_10q22.3c ### chr10 rmsk gene 79319465 79322018 . + . gene_id "ERV316A3_10q22.3c"; transcript_id "ERV316A3_10q22.3c"; locus "ERV316A3_10q22.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1851"; model_cov "1064"; model_pct "20.4"; chr10 rmsk exon 79319465 79319902 996 + . gene_id "ERV316A3_10q22.3c"; transcript_id "ERV316A3_10q22.3c"; locus "ERV316A3_10q22.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1851"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "6"; chr10 rmsk exon 79320462 79321531 3234 + . gene_id "ERV316A3_10q22.3c"; transcript_id "ERV316A3_10q22.3c"; locus "ERV316A3_10q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1851"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-757"; repStart "3405"; chr10 rmsk exon 79321633 79322018 970 + . gene_id "ERV316A3_10q22.3c"; transcript_id "ERV316A3_10q22.3c"; locus "ERV316A3_10q22.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1851"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-55"; repStart "1"; ### HUERSP2_10q22.3 ### chr10 rmsk gene 79603804 79604152 . - . gene_id "HUERSP2_10q22.3"; transcript_id "HUERSP2_10q22.3"; locus "HUERSP2_10q22.3"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0078"; model_cov "339"; model_pct "11.0"; chr10 rmsk exon 79603804 79604152 2215 - . gene_id "HUERSP2_10q22.3"; transcript_id "HUERSP2_10q22.3"; locus "HUERSP2_10q22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0078"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "2748"; repStart "-1"; ### ERVLB4_10q22.3a ### chr10 rmsk gene 79636240 79637627 . - . gene_id "ERVLB4_10q22.3a"; transcript_id "ERVLB4_10q22.3a"; locus "ERVLB4_10q22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1128"; model_cov "970"; model_pct "17.0"; chr10 rmsk exon 79636240 79636699 2170 - . gene_id "ERVLB4_10q22.3a"; transcript_id "ERVLB4_10q22.3a"; locus "ERVLB4_10q22.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1128"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "1"; repStart "-67"; chr10 rmsk exon 79636700 79636990 1614 - . gene_id "ERVLB4_10q22.3a"; transcript_id "ERVLB4_10q22.3a"; locus "ERVLB4_10q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1128"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5421"; repStart "0"; chr10 rmsk exon 79636970 79637627 3500 - . gene_id "ERVLB4_10q22.3a"; transcript_id "ERVLB4_10q22.3a"; locus "ERVLB4_10q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1128"; repClass "LTR"; repEnd "4833"; repFamily "ERVL"; repLeft "4156"; repStart "-881"; ### ERV316A3_10q22.3d ### chr10 rmsk gene 79754822 79756129 . - . gene_id "ERV316A3_10q22.3d"; transcript_id "ERV316A3_10q22.3d"; locus "ERV316A3_10q22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1852"; model_cov "674"; model_pct "12.9"; chr10 rmsk exon 79754822 79755482 798 - . gene_id "ERV316A3_10q22.3d"; transcript_id "ERV316A3_10q22.3d"; locus "ERV316A3_10q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1852"; repClass "LTR"; repEnd "919"; repFamily "ERVL"; repLeft "245"; repStart "-4307"; chr10 rmsk exon 79755729 79756129 923 - . gene_id "ERV316A3_10q22.3d"; transcript_id "ERV316A3_10q22.3d"; locus "ERV316A3_10q22.3d"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1852"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "7"; repStart "0"; ### HERVH_10q22.3b ### chr10 rmsk gene 79963908 79965544 . + . gene_id "HERVH_10q22.3b"; transcript_id "HERVH_10q22.3b"; locus "HERVH_10q22.3b"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0814"; model_cov "1972"; model_pct "25.6"; chr10 rmsk exon 79963908 79965138 7306 + . gene_id "HERVH_10q22.3b"; transcript_id "HERVH_10q22.3b"; locus "HERVH_10q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0814"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4863"; chr10 rmsk exon 79965143 79965544 2707 + . gene_id "HERVH_10q22.3b"; transcript_id "HERVH_10q22.3b"; locus "HERVH_10q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0814"; repClass "LTR"; repEnd "7695"; repFamily "ERV1"; repLeft "-18"; repStart "7283"; ### ERVLB4_10q22.3b ### chr10 rmsk gene 80019187 80020843 . + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1129"; model_cov "581"; model_pct "10.2"; chr10 rmsk exon 80019187 80019336 559 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "-231"; repStart "17"; chr10 rmsk exon 80019342 80019442 284 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-61"; repStart "240"; chr10 rmsk exon 80019481 80019591 747 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "101"; repFamily "ERVL"; repLeft "-5613"; repStart "1"; chr10 rmsk exon 80019883 80019991 747 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "-5486"; repStart "102"; chr10 rmsk exon 80019988 80020339 1778 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "-1137"; repStart "4222"; chr10 rmsk exon 80020634 80020843 504 + . gene_id "ERVLB4_10q22.3b"; transcript_id "ERVLB4_10q22.3b"; locus "ERVLB4_10q22.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1129"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "172"; ### ERVLB4_10q22.3c ### chr10 rmsk gene 80035382 80037084 . + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1130"; model_cov "581"; model_pct "10.2"; chr10 rmsk exon 80035382 80035531 483 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "-298"; repStart "17"; chr10 rmsk exon 80035537 80035675 398 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "240"; chr10 rmsk exon 80035676 80035786 672 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "101"; repFamily "ERVL"; repLeft "-5613"; repStart "1"; chr10 rmsk exon 80036089 80036197 672 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "-5486"; repStart "102"; chr10 rmsk exon 80036194 80036541 1773 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "-1137"; repStart "4222"; chr10 rmsk exon 80036876 80037084 430 + . gene_id "ERVLB4_10q22.3c"; transcript_id "ERVLB4_10q22.3c"; locus "ERVLB4_10q22.3c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1130"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "239"; ### MER4B_10q22.3 ### chr10 rmsk gene 80062283 80073050 . - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0285"; model_cov "4082"; model_pct "60.4"; chr10 rmsk exon 80062283 80062468 2289 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "895"; repFamily "ERV1"; repLeft "721"; repStart "-5"; chr10 rmsk exon 80062777 80063230 2289 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "1"; repStart "-180"; chr10 rmsk exon 80063231 80063392 11096 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6599"; repStart "0"; chr10 rmsk exon 80063692 80064078 11096 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6200"; repStart "-160"; chr10 rmsk exon 80064328 80065082 11096 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "6199"; repFamily "ERV1"; repLeft "5454"; repStart "-559"; chr10 rmsk exon 80065386 80065550 11096 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "5453"; repFamily "ERV1"; repLeft "5279"; repStart "-1305"; chr10 rmsk exon 80066138 80066445 11096 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "5278"; repFamily "ERV1"; repLeft "4954"; repStart "-1480"; chr10 rmsk exon 80066951 80067177 1706 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "4966"; repFamily "ERV1"; repLeft "4740"; repStart "-1792"; chr10 rmsk exon 80067177 80067474 1647 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "2643"; repFamily "ERV1"; repLeft "2325"; repStart "-4115"; chr10 rmsk exon 80068358 80068745 4933 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "2319"; repFamily "ERV1"; repLeft "1961"; repStart "-4439"; chr10 rmsk exon 80069054 80069576 4933 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "1960"; repFamily "ERV1"; repLeft "1436"; repStart "-4798"; chr10 rmsk exon 80070862 80071013 1421 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "1185"; repFamily "ERV1"; repLeft "1056"; repStart "-5573"; chr10 rmsk exon 80071309 80071978 3195 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "1055"; repFamily "ERV1"; repLeft "328"; repStart "-5703"; chr10 rmsk exon 80072721 80073050 1538 - . gene_id "MER4B_10q22.3"; transcript_id "MER4B_10q22.3"; locus "MER4B_10q22.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0285"; repClass "LTR"; repEnd "350"; repFamily "ERV1"; repLeft "1"; repStart "-260"; ### LTR57_10q22.3 ### chr10 rmsk gene 80069101 80070478 . - . gene_id "LTR57_10q22.3"; transcript_id "LTR57_10q22.3"; locus "LTR57_10q22.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0117"; model_cov "586"; model_pct "11.0"; chr10 rmsk exon 80069101 80069335 2016 - . gene_id "LTR57_10q22.3"; transcript_id "LTR57_10q22.3"; locus "LTR57_10q22.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0117"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "1014"; repStart "-3763"; chr10 rmsk exon 80070458 80070478 2016 - . gene_id "LTR57_10q22.3"; transcript_id "LTR57_10q22.3"; locus "LTR57_10q22.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0117"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "993"; repStart "-4330"; ### MER4_10q22.3 ### chr10 rmsk gene 80069336 80070878 . - . gene_id "MER4_10q22.3"; transcript_id "MER4_10q22.3"; locus "MER4_10q22.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0496"; model_cov "763"; model_pct "11.6"; chr10 rmsk exon 80069336 80069639 3649 - . gene_id "MER4_10q22.3"; transcript_id "MER4_10q22.3"; locus "MER4_10q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0496"; repClass "LTR"; repEnd "2513"; repFamily "ERV1"; repLeft "2188"; repStart "-4085"; chr10 rmsk exon 80070479 80070878 3649 - . gene_id "MER4_10q22.3"; transcript_id "MER4_10q22.3"; locus "MER4_10q22.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0496"; repClass "LTR"; repEnd "2187"; repFamily "ERV1"; repLeft "1749"; repStart "-4411"; ### HML1_10q22.3 ### chr10 rmsk gene 80105622 80109090 . + . gene_id "HML1_10q22.3"; transcript_id "HML1_10q22.3"; locus "HML1_10q22.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0072"; model_cov "2552"; model_pct "41.9"; chr10 rmsk exon 80105622 80107153 12640 + . gene_id "HML1_10q22.3"; transcript_id "HML1_10q22.3"; locus "HML1_10q22.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0072"; repClass "LTR"; repEnd "1552"; repFamily "ERVK"; repLeft "-4544"; repStart "16"; chr10 rmsk exon 80107171 80107232 447 + . gene_id "HML1_10q22.3"; transcript_id "HML1_10q22.3"; locus "HML1_10q22.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0072"; repClass "LTR"; repEnd "3376"; repFamily "ERVK"; repLeft "-2720"; repStart "3315"; chr10 rmsk exon 80107233 80108175 7596 + . gene_id "HML1_10q22.3"; transcript_id "HML1_10q22.3"; locus "HML1_10q22.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0072"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "4942"; chr10 rmsk exon 80108676 80109090 2097 + . gene_id "HML1_10q22.3"; transcript_id "HML1_10q22.3"; locus "HML1_10q22.3"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0072"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVI_10q23.1 ### chr10 rmsk gene 80738638 80748037 . + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0022"; model_cov "7606"; model_pct "97.7"; chr10 rmsk exon 80738638 80739146 3871 + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0022"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 80739176 80740194 2275 + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0022"; repClass "LTR"; repEnd "1189"; repFamily "ERV1"; repLeft "-6596"; repStart "207"; chr10 rmsk exon 80740524 80744138 37533 + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0022"; repClass "LTR"; repEnd "4715"; repFamily "ERV1"; repLeft "-3070"; repStart "1144"; chr10 rmsk exon 80744448 80747517 37533 + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0022"; repClass "LTR"; repEnd "7769"; repFamily "ERV1"; repLeft "-16"; repStart "4716"; chr10 rmsk exon 80747531 80748037 3779 + . gene_id "HERVI_10q23.1"; transcript_id "HERVI_10q23.1"; locus "HERVI_10q23.1"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0022"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP1_10q23.1a ### chr10 rmsk gene 80949111 80951151 . - . gene_id "HUERSP1_10q23.1a"; transcript_id "HUERSP1_10q23.1a"; locus "HUERSP1_10q23.1a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0119"; model_cov "1729"; model_pct "27.6"; chr10 rmsk exon 80949111 80949210 4010 - . gene_id "HUERSP1_10q23.1a"; transcript_id "HUERSP1_10q23.1a"; locus "HUERSP1_10q23.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0119"; repClass "LTR"; repEnd "1076"; repFamily "ERV1"; repLeft "992"; repStart "-5187"; chr10 rmsk exon 80949522 80951051 5083 - . gene_id "HUERSP1_10q23.1a"; transcript_id "HUERSP1_10q23.1a"; locus "HUERSP1_10q23.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0119"; repClass "LTR"; repEnd "991"; repFamily "ERV1"; repLeft "-654"; repStart "-5272"; chr10 rmsk exon 80951052 80951151 524 - . gene_id "HUERSP1_10q23.1a"; transcript_id "HUERSP1_10q23.1a"; locus "HUERSP1_10q23.1a"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0119"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "628"; repStart "0"; ### MER61_10q23.1 ### chr10 rmsk gene 80952403 80955739 . - . gene_id "MER61_10q23.1"; transcript_id "MER61_10q23.1"; locus "MER61_10q23.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0252"; model_cov "2433"; model_pct "46.6"; chr10 rmsk exon 80952403 80952723 1704 - . gene_id "MER61_10q23.1"; transcript_id "MER61_10q23.1"; locus "MER61_10q23.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0252"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "8"; repStart "0"; chr10 rmsk exon 80952749 80953180 16376 - . gene_id "MER61_10q23.1"; transcript_id "MER61_10q23.1"; locus "MER61_10q23.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0252"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4745"; repStart "0"; chr10 rmsk exon 80953487 80955434 16376 - . gene_id "MER61_10q23.1"; transcript_id "MER61_10q23.1"; locus "MER61_10q23.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0252"; repClass "LTR"; repEnd "4744"; repFamily "ERV1"; repLeft "2783"; repStart "-473"; chr10 rmsk exon 80955435 80955739 1546 - . gene_id "MER61_10q23.1"; transcript_id "MER61_10q23.1"; locus "MER61_10q23.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0252"; repClass "LTR"; repEnd "319"; repFamily "ERV1"; repLeft "1"; repStart "-22"; ### ERVLB4_10q23.1a ### chr10 rmsk gene 80970252 80971746 . - . gene_id "ERVLB4_10q23.1a"; transcript_id "ERVLB4_10q23.1a"; locus "ERVLB4_10q23.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1131"; model_cov "1481"; model_pct "25.9"; chr10 rmsk exon 80970252 80971746 6665 - . gene_id "ERVLB4_10q23.1a"; transcript_id "ERVLB4_10q23.1a"; locus "ERVLB4_10q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1131"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "3255"; repStart "-978"; ### ERVLE_10q23.1a ### chr10 rmsk gene 81063277 81066196 . - . gene_id "ERVLE_10q23.1a"; transcript_id "ERVLE_10q23.1a"; locus "ERVLE_10q23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2421"; model_cov "1035"; model_pct "18.3"; chr10 rmsk exon 81063277 81063329 255 - . gene_id "ERVLE_10q23.1a"; transcript_id "ERVLE_10q23.1a"; locus "ERVLE_10q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2421"; repClass "LTR"; repEnd "4315"; repFamily "ERVL"; repLeft "4264"; repStart "-1352"; chr10 rmsk exon 81063813 81063917 255 - . gene_id "ERVLE_10q23.1a"; transcript_id "ERVLE_10q23.1a"; locus "ERVLE_10q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2421"; repClass "LTR"; repEnd "4263"; repFamily "ERVL"; repLeft "4159"; repStart "-1404"; chr10 rmsk exon 81064072 81064315 380 - . gene_id "ERVLE_10q23.1a"; transcript_id "ERVLE_10q23.1a"; locus "ERVLE_10q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2421"; repClass "LTR"; repEnd "3850"; repFamily "ERVL"; repLeft "3595"; repStart "-1817"; chr10 rmsk exon 81065570 81066196 1018 - . gene_id "ERVLE_10q23.1a"; transcript_id "ERVLE_10q23.1a"; locus "ERVLE_10q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2421"; repClass "LTR"; repEnd "2947"; repFamily "ERVL"; repLeft "2322"; repStart "-2720"; ### MER4B_10q23.1a ### chr10 rmsk gene 81191959 81197546 . + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0287"; model_cov "2344"; model_pct "34.7"; chr10 rmsk exon 81191959 81192071 664 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "0"; repStart "791"; chr10 rmsk exon 81192076 81192446 1695 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "384"; repFamily "ERV1"; repLeft "-6374"; repStart "6"; chr10 rmsk exon 81192445 81193036 3449 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "1238"; repFamily "ERV1"; repLeft "-5520"; repStart "686"; chr10 rmsk exon 81193337 81193763 3449 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "1426"; repFamily "ERV1"; repLeft "-5332"; repStart "956"; chr10 rmsk exon 81195280 81195551 414 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "2591"; repFamily "ERV1"; repLeft "-4167"; repStart "2417"; chr10 rmsk exon 81195821 81196197 1977 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "6317"; repFamily "ERV1"; repLeft "-441"; repStart "5932"; chr10 rmsk exon 81196306 81196676 2057 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6373"; chr10 rmsk exon 81196677 81196771 4104 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4D0"; geneRegion "ltr"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "85"; repFamily "ERV1"; repLeft "-787"; repStart "1"; chr10 rmsk exon 81196821 81197546 4104 + . gene_id "MER4B_10q23.1a"; transcript_id "MER4B_10q23.1a"; locus "MER4B_10q23.1a"; repName "MER4D0"; geneRegion "ltr"; locid "MER4B-int_0287"; repClass "LTR"; repEnd "832"; repFamily "ERV1"; repLeft "-40"; repStart "86"; ### HERVL_10q23.1a ### chr10 rmsk gene 81204013 81205218 . + . gene_id "HERVL_10q23.1a"; transcript_id "HERVL_10q23.1a"; locus "HERVL_10q23.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0862"; model_cov "666"; model_pct "11.8"; chr10 rmsk exon 81204013 81204549 2489 + . gene_id "HERVL_10q23.1a"; transcript_id "HERVL_10q23.1a"; locus "HERVL_10q23.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0862"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 81204550 81205218 4688 + . gene_id "HERVL_10q23.1a"; transcript_id "HERVL_10q23.1a"; locus "HERVL_10q23.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0862"; repClass "LTR"; repEnd "667"; repFamily "ERVL"; repLeft "-4987"; repStart "1"; ### ERVLB4_10q23.1b ### chr10 rmsk gene 81205214 81207162 . + . gene_id "ERVLB4_10q23.1b"; transcript_id "ERVLB4_10q23.1b"; locus "ERVLB4_10q23.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1132"; model_cov "1956"; model_pct "34.2"; chr10 rmsk exon 81205214 81207162 11508 + . gene_id "ERVLB4_10q23.1b"; transcript_id "ERVLB4_10q23.1b"; locus "ERVLB4_10q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1132"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3758"; ### PABLB_10q23.1 ### chr10 rmsk gene 81527951 81528681 . + . gene_id "PABLB_10q23.1"; transcript_id "PABLB_10q23.1"; locus "PABLB_10q23.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0066"; model_cov "733"; model_pct "10.3"; chr10 rmsk exon 81527951 81528681 905 + . gene_id "PABLB_10q23.1"; transcript_id "PABLB_10q23.1"; locus "PABLB_10q23.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0066"; repClass "LTR"; repEnd "3304"; repFamily "ERV1"; repLeft "-3818"; repStart "2571"; ### PRIMA41_10q23.1 ### chr10 rmsk gene 81528685 81530338 . + . gene_id "PRIMA41_10q23.1"; transcript_id "PRIMA41_10q23.1"; locus "PRIMA41_10q23.1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0089"; model_cov "964"; model_pct "12.4"; chr10 rmsk exon 81528685 81528817 277 + . gene_id "PRIMA41_10q23.1"; transcript_id "PRIMA41_10q23.1"; locus "PRIMA41_10q23.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0089"; repClass "LTR"; repEnd "3799"; repFamily "ERV1"; repLeft "-3957"; repStart "3667"; chr10 rmsk exon 81529030 81529871 620 + . gene_id "PRIMA41_10q23.1"; transcript_id "PRIMA41_10q23.1"; locus "PRIMA41_10q23.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0089"; repClass "LTR"; repEnd "5851"; repFamily "ERV1"; repLeft "-1905"; repStart "5341"; chr10 rmsk exon 81529976 81530338 378 + . gene_id "PRIMA41_10q23.1"; transcript_id "PRIMA41_10q23.1"; locus "PRIMA41_10q23.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0089"; repClass "LTR"; repEnd "6764"; repFamily "ERV1"; repLeft "-992"; repStart "6442"; ### HERVH_10q23.1 ### chr10 rmsk gene 83057508 83063365 . + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0815"; model_cov "5644"; model_pct "73.2"; chr10 rmsk exon 83057508 83057877 1596 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-1"; repStart "-20"; chr10 rmsk exon 83057879 83061167 16596 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "1"; chr10 rmsk exon 83061154 83061944 3366 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "5928"; repFamily "ERV1"; repLeft "-1785"; repStart "4857"; chr10 rmsk exon 83061945 83062402 2683 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6489"; chr10 rmsk exon 83062456 83062990 3306 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7185"; chr10 rmsk exon 83062991 83063365 1810 + . gene_id "HERVH_10q23.1"; transcript_id "HERVH_10q23.1"; locus "HERVH_10q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0815"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10q23.1a ### chr10 rmsk gene 83176955 83180068 . + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1854"; model_cov "2181"; model_pct "41.7"; chr10 rmsk exon 83176955 83177331 866 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-2708"; repStart "2144"; chr10 rmsk exon 83177505 83177716 481 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "3124"; repFamily "ERVL"; repLeft "-2102"; repStart "2753"; chr10 rmsk exon 83177735 83177904 1302 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "3751"; repFamily "ERVL"; repLeft "-1475"; repStart "3581"; chr10 rmsk exon 83178286 83178935 1302 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "4129"; repFamily "ERVL"; repLeft "-1097"; repStart "3311"; chr10 rmsk exon 83178946 83179382 981 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "-311"; repStart "4467"; chr10 rmsk exon 83179502 83179656 634 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "-278"; repStart "3"; chr10 rmsk exon 83179827 83180068 318 + . gene_id "ERV316A3_10q23.1a"; transcript_id "ERV316A3_10q23.1a"; locus "ERV316A3_10q23.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1854"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "145"; ### MER101_10q23.1a ### chr10 rmsk gene 83437679 83439615 . + . gene_id "MER101_10q23.1a"; transcript_id "MER101_10q23.1a"; locus "MER101_10q23.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0262"; model_cov "2228"; model_pct "33.6"; chr10 rmsk exon 83437679 83439615 2751 + . gene_id "MER101_10q23.1a"; transcript_id "MER101_10q23.1a"; locus "MER101_10q23.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0262"; repClass "LTR"; repEnd "4871"; repFamily "ERV1"; repLeft "-1768"; repStart "2643"; ### ERVLE_10q23.1b ### chr10 rmsk gene 83644255 83646816 . - . gene_id "ERVLE_10q23.1b"; transcript_id "ERVLE_10q23.1b"; locus "ERVLE_10q23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2422"; model_cov "1472"; model_pct "26.0"; chr10 rmsk exon 83644255 83645120 2895 - . gene_id "ERVLE_10q23.1b"; transcript_id "ERVLE_10q23.1b"; locus "ERVLE_10q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2422"; repClass "LTR"; repEnd "1454"; repFamily "ERVL"; repLeft "550"; repStart "-4213"; chr10 rmsk exon 83645385 83645864 2895 - . gene_id "ERVLE_10q23.1b"; transcript_id "ERVLE_10q23.1b"; locus "ERVLE_10q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2422"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "-6"; repStart "-5143"; chr10 rmsk exon 83646778 83646816 1181 - . gene_id "ERVLE_10q23.1b"; transcript_id "ERVLE_10q23.1b"; locus "ERVLE_10q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2422"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "2"; repStart "-5627"; ### MER4B_10q23.1b ### chr10 rmsk gene 83758994 83761173 . - . gene_id "MER4B_10q23.1b"; transcript_id "MER4B_10q23.1b"; locus "MER4B_10q23.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0288"; model_cov "2488"; model_pct "36.8"; chr10 rmsk exon 83758994 83760349 3569 - . gene_id "MER4B_10q23.1b"; transcript_id "MER4B_10q23.1b"; locus "MER4B_10q23.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0288"; repClass "LTR"; repEnd "3593"; repFamily "ERV1"; repLeft "2145"; repStart "-3165"; chr10 rmsk exon 83760613 83761173 997 - . gene_id "MER4B_10q23.1b"; transcript_id "MER4B_10q23.1b"; locus "MER4B_10q23.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0288"; repClass "LTR"; repEnd "2839"; repFamily "ERV1"; repLeft "1799"; repStart "-3919"; ### ERVLE_10q23.1c ### chr10 rmsk gene 83778434 83780024 . - . gene_id "ERVLE_10q23.1c"; transcript_id "ERVLE_10q23.1c"; locus "ERVLE_10q23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2423"; model_cov "738"; model_pct "13.0"; chr10 rmsk exon 83778434 83778715 574 - . gene_id "ERVLE_10q23.1c"; transcript_id "ERVLE_10q23.1c"; locus "ERVLE_10q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2423"; repClass "LTR"; repEnd "2925"; repFamily "ERVL"; repLeft "2642"; repStart "-2742"; chr10 rmsk exon 83779257 83779410 515 - . gene_id "ERVLE_10q23.1c"; transcript_id "ERVLE_10q23.1c"; locus "ERVLE_10q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2423"; repClass "LTR"; repEnd "2478"; repFamily "ERVL"; repLeft "2327"; repStart "-3189"; chr10 rmsk exon 83779730 83780024 569 - . gene_id "ERVLE_10q23.1c"; transcript_id "ERVLE_10q23.1c"; locus "ERVLE_10q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2423"; repClass "LTR"; repEnd "1973"; repFamily "ERVL"; repLeft "1669"; repStart "-3694"; ### ERVLE_10q23.1d ### chr10 rmsk gene 83803878 83805657 . + . gene_id "ERVLE_10q23.1d"; transcript_id "ERVLE_10q23.1d"; locus "ERVLE_10q23.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2424"; model_cov "1290"; model_pct "22.8"; chr10 rmsk exon 83803878 83804326 709 + . gene_id "ERVLE_10q23.1d"; transcript_id "ERVLE_10q23.1d"; locus "ERVLE_10q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2424"; repClass "LTR"; repEnd "3718"; repFamily "ERVL"; repLeft "-1949"; repStart "3232"; chr10 rmsk exon 83804365 83804691 631 + . gene_id "ERVLE_10q23.1d"; transcript_id "ERVLE_10q23.1d"; locus "ERVLE_10q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2424"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "-1533"; repStart "3798"; chr10 rmsk exon 83805200 83805657 434 + . gene_id "ERVLE_10q23.1d"; transcript_id "ERVLE_10q23.1d"; locus "ERVLE_10q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2424"; repClass "LTR"; repEnd "5290"; repFamily "ERVL"; repLeft "-377"; repStart "4822"; ### HERVL_10q23.1b ### chr10 rmsk gene 83971193 83977779 . - . gene_id "HERVL_10q23.1b"; transcript_id "HERVL_10q23.1b"; locus "HERVL_10q23.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0863"; model_cov "5652"; model_pct "100.0"; chr10 rmsk exon 83971193 83971632 3511 - . gene_id "HERVL_10q23.1b"; transcript_id "HERVL_10q23.1b"; locus "HERVL_10q23.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0863"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr10 rmsk exon 83971634 83977263 45776 - . gene_id "HERVL_10q23.1b"; transcript_id "HERVL_10q23.1b"; locus "HERVL_10q23.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0863"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr10 rmsk exon 83977264 83977315 3535 - . gene_id "HERVL_10q23.1b"; transcript_id "HERVL_10q23.1b"; locus "HERVL_10q23.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0863"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "393"; repStart "0"; chr10 rmsk exon 83977391 83977779 3535 - . gene_id "HERVL_10q23.1b"; transcript_id "HERVL_10q23.1b"; locus "HERVL_10q23.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0863"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "5"; repStart "-52"; ### HERVEA_10q23.1 ### chr10 rmsk gene 84108445 84117193 . + . gene_id "HERVEA_10q23.1"; transcript_id "HERVEA_10q23.1"; locus "HERVEA_10q23.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0060"; model_cov "7845"; model_pct "100.0"; chr10 rmsk exon 84108445 84108910 3701 + . gene_id "HERVEA_10q23.1"; transcript_id "HERVEA_10q23.1"; locus "HERVEA_10q23.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0060"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 84108911 84116727 52152 + . gene_id "HERVEA_10q23.1"; transcript_id "HERVEA_10q23.1"; locus "HERVEA_10q23.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0060"; repClass "LTR"; repEnd "7846"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr10 rmsk exon 84116732 84117193 3684 + . gene_id "HERVEA_10q23.1"; transcript_id "HERVEA_10q23.1"; locus "HERVEA_10q23.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0060"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_10q23.1 ### chr10 rmsk gene 84118548 84126791 . - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0110"; model_cov "6542"; model_pct "100.0"; chr10 rmsk exon 84118548 84119048 3465 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 84119049 84122689 34004 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1463"; repStart "0"; chr10 rmsk exon 84122985 84123630 34004 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "1462"; repFamily "ERV1"; repLeft "839"; repStart "-3640"; chr10 rmsk exon 84123617 84125621 14185 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "-400"; repFamily "ERV1"; repLeft "-2424"; repStart "-5502"; chr10 rmsk exon 84125916 84126185 8657 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "-2425"; repFamily "ERV1"; repLeft "-2681"; repStart "-7527"; chr10 rmsk exon 84126186 84126791 3106 - . gene_id "HERVIP10FH_10q23.1"; transcript_id "HERVIP10FH_10q23.1"; locus "HERVIP10FH_10q23.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0110"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_10q23.1e ### chr10 rmsk gene 84132243 84132911 . + . gene_id "ERVLE_10q23.1e"; transcript_id "ERVLE_10q23.1e"; locus "ERVLE_10q23.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2425"; model_cov "665"; model_pct "11.7"; chr10 rmsk exon 84132243 84132911 1637 + . gene_id "ERVLE_10q23.1e"; transcript_id "ERVLE_10q23.1e"; locus "ERVLE_10q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2425"; repClass "LTR"; repEnd "3983"; repFamily "ERVL"; repLeft "-1684"; repStart "3318"; ### HARLEQUIN_10q23.1 ### chr10 rmsk gene 84167186 84172465 . - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0127"; model_cov "4346"; model_pct "63.0"; chr10 rmsk exon 84167186 84167669 3851 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 84167670 84168462 5064 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6106"; repStart "0"; chr10 rmsk exon 84168503 84170027 11716 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "4878"; repFamily "ERV1"; repLeft "3352"; repStart "-2018"; chr10 rmsk exon 84170027 84170994 6517 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1570"; repStart "-4322"; chr10 rmsk exon 84170978 84171612 4416 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "911"; repFamily "ERV1"; repLeft "264"; repStart "-5985"; chr10 rmsk exon 84171610 84171986 2725 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr10 rmsk exon 84171987 84172465 3906 - . gene_id "HARLEQUIN_10q23.1"; transcript_id "HARLEQUIN_10q23.1"; locus "HARLEQUIN_10q23.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0127"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_10q23.1c ### chr10 rmsk gene 84322907 84325017 . + . gene_id "HERVL_10q23.1c"; transcript_id "HERVL_10q23.1c"; locus "HERVL_10q23.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0864"; model_cov "1535"; model_pct "27.1"; chr10 rmsk exon 84322907 84324472 11747 + . gene_id "HERVL_10q23.1c"; transcript_id "HERVL_10q23.1c"; locus "HERVL_10q23.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0864"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4119"; chr10 rmsk exon 84324473 84325017 2160 + . gene_id "HERVL_10q23.1c"; transcript_id "HERVL_10q23.1c"; locus "HERVL_10q23.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0864"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVW_10q23.1 ### chr10 rmsk gene 84525371 84531069 . - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0205"; model_cov "4272"; model_pct "49.5"; chr10 rmsk exon 84525371 84526129 6224 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 84526130 84526421 2449 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr10 rmsk exon 84526412 84526450 300 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr10 rmsk exon 84526444 84527055 5056 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5405"; repStart "-2607"; chr10 rmsk exon 84527035 84528360 11006 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr10 rmsk exon 84528353 84529554 9660 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "816"; repStart "-6619"; chr10 rmsk exon 84529599 84530308 9660 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "815"; repFamily "ERV1"; repLeft "1"; repStart "-7811"; chr10 rmsk exon 84530309 84531069 6210 - . gene_id "HERVW_10q23.1"; transcript_id "HERVW_10q23.1"; locus "HERVW_10q23.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0205"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10q23.1b ### chr10 rmsk gene 84723871 84724930 . + . gene_id "ERV316A3_10q23.1b"; transcript_id "ERV316A3_10q23.1b"; locus "ERV316A3_10q23.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1855"; model_cov "1067"; model_pct "20.4"; chr10 rmsk exon 84723871 84724692 1634 + . gene_id "ERV316A3_10q23.1b"; transcript_id "ERV316A3_10q23.1b"; locus "ERV316A3_10q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1855"; repClass "LTR"; repEnd "4774"; repFamily "ERVL"; repLeft "-452"; repStart "3924"; chr10 rmsk exon 84724715 84724930 854 + . gene_id "ERV316A3_10q23.1b"; transcript_id "ERV316A3_10q23.1b"; locus "ERV316A3_10q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1855"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5009"; ### HUERSP1_10q23.1b ### chr10 rmsk gene 84806901 84813575 . - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0121"; model_cov "5653"; model_pct "90.3"; chr10 rmsk exon 84806901 84806972 536 - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0121"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "620"; repStart "0"; chr10 rmsk exon 84806973 84809799 35997 - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0121"; repClass "LTR"; repEnd "5683"; repFamily "ERV1"; repLeft "2888"; repStart "-580"; chr10 rmsk exon 84810024 84811030 35997 - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0121"; repClass "LTR"; repEnd "2887"; repFamily "ERV1"; repLeft "1922"; repStart "-3376"; chr10 rmsk exon 84811062 84812902 35997 - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0121"; repClass "LTR"; repEnd "1921"; repFamily "ERV1"; repLeft "28"; repStart "-4342"; chr10 rmsk exon 84812906 84813575 4661 - . gene_id "HUERSP1_10q23.1b"; transcript_id "HUERSP1_10q23.1b"; locus "HUERSP1_10q23.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0121"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_10q23.1d ### chr10 rmsk gene 84881635 84885694 . - . gene_id "HERVL_10q23.1d"; transcript_id "HERVL_10q23.1d"; locus "HERVL_10q23.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0865"; model_cov "3545"; model_pct "62.7"; chr10 rmsk exon 84881635 84882177 1899 - . gene_id "HERVL_10q23.1d"; transcript_id "HERVL_10q23.1d"; locus "HERVL_10q23.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0865"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-100"; repStart "-2"; chr10 rmsk exon 84882184 84885694 25808 - . gene_id "HERVL_10q23.1d"; transcript_id "HERVL_10q23.1d"; locus "HERVL_10q23.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0865"; repClass "LTR"; repEnd "5647"; repFamily "ERVL"; repLeft "2102"; repStart "-7"; ### LTR57_10q23.1 ### chr10 rmsk gene 85025297 85026618 . + . gene_id "LTR57_10q23.1"; transcript_id "LTR57_10q23.1"; locus "LTR57_10q23.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0119"; model_cov "1298"; model_pct "24.3"; chr10 rmsk exon 85025297 85026618 6525 + . gene_id "LTR57_10q23.1"; transcript_id "LTR57_10q23.1"; locus "LTR57_10q23.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0119"; repClass "LTR"; repEnd "1594"; repFamily "ERVL"; repLeft "-3749"; repStart "296"; ### HERVL_10q23.1e ### chr10 rmsk gene 85029711 85036265 . + . gene_id "HERVL_10q23.1e"; transcript_id "HERVL_10q23.1e"; locus "HERVL_10q23.1e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0866"; model_cov "5653"; model_pct "100.0"; chr10 rmsk exon 85029711 85030148 2936 + . gene_id "HERVL_10q23.1e"; transcript_id "HERVL_10q23.1e"; locus "HERVL_10q23.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0866"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 85030149 85035743 41858 + . gene_id "HERVL_10q23.1e"; transcript_id "HERVL_10q23.1e"; locus "HERVL_10q23.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0866"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 85035744 85036113 2971 + . gene_id "HERVL_10q23.1e"; transcript_id "HERVL_10q23.1e"; locus "HERVL_10q23.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0866"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr10 rmsk exon 85036146 85036265 2971 + . gene_id "HERVL_10q23.1e"; transcript_id "HERVL_10q23.1e"; locus "HERVL_10q23.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0866"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "387"; ### MER41_10q23.1 ### chr10 rmsk gene 85184306 85190827 . - . gene_id "MER41_10q23.1"; transcript_id "MER41_10q23.1"; locus "MER41_10q23.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0349"; model_cov "5943"; model_pct "99.9"; chr10 rmsk exon 85184306 85184859 4298 - . gene_id "MER41_10q23.1"; transcript_id "MER41_10q23.1"; locus "MER41_10q23.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0349"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 85184860 85190222 13428 - . gene_id "MER41_10q23.1"; transcript_id "MER41_10q23.1"; locus "MER41_10q23.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0349"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 85190274 85190827 4422 - . gene_id "MER41_10q23.1"; transcript_id "MER41_10q23.1"; locus "MER41_10q23.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0349"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_10q23.1f ### chr10 rmsk gene 85461704 85462485 . - . gene_id "ERVLE_10q23.1f"; transcript_id "ERVLE_10q23.1f"; locus "ERVLE_10q23.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2428"; model_cov "792"; model_pct "14.0"; chr10 rmsk exon 85461704 85462485 2096 - . gene_id "ERVLE_10q23.1f"; transcript_id "ERVLE_10q23.1f"; locus "ERVLE_10q23.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2428"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "3640"; repStart "-1235"; ### ERVLE_10q23.1g ### chr10 rmsk gene 85510511 85511904 . + . gene_id "ERVLE_10q23.1g"; transcript_id "ERVLE_10q23.1g"; locus "ERVLE_10q23.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2430"; model_cov "1314"; model_pct "23.2"; chr10 rmsk exon 85510511 85510620 324 + . gene_id "ERVLE_10q23.1g"; transcript_id "ERVLE_10q23.1g"; locus "ERVLE_10q23.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2430"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "-1856"; repStart "3701"; chr10 rmsk exon 85510625 85511328 1622 + . gene_id "ERVLE_10q23.1g"; transcript_id "ERVLE_10q23.1g"; locus "ERVLE_10q23.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2430"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-1007"; repStart "3944"; chr10 rmsk exon 85511421 85511904 764 + . gene_id "ERVLE_10q23.1g"; transcript_id "ERVLE_10q23.1g"; locus "ERVLE_10q23.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2430"; repClass "LTR"; repEnd "5288"; repFamily "ERVL"; repLeft "-379"; repStart "4800"; ### MER101_10q23.1b ### chr10 rmsk gene 85534390 85536387 . - . gene_id "MER101_10q23.1b"; transcript_id "MER101_10q23.1b"; locus "MER101_10q23.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0264"; model_cov "989"; model_pct "14.9"; chr10 rmsk exon 85534390 85535279 3306 - . gene_id "MER101_10q23.1b"; transcript_id "MER101_10q23.1b"; locus "MER101_10q23.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0264"; repClass "LTR"; repEnd "2216"; repFamily "ERV1"; repLeft "1348"; repStart "-4423"; chr10 rmsk exon 85536262 85536387 322 - . gene_id "MER101_10q23.1b"; transcript_id "MER101_10q23.1b"; locus "MER101_10q23.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0264"; repClass "LTR"; repEnd "1904"; repFamily "ERV1"; repLeft "1783"; repStart "-4735"; ### ERVLE_10q23.1h ### chr10 rmsk gene 86011630 86014581 . + . gene_id "ERVLE_10q23.1h"; transcript_id "ERVLE_10q23.1h"; locus "ERVLE_10q23.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2431"; model_cov "2148"; model_pct "37.9"; chr10 rmsk exon 86011630 86011875 869 + . gene_id "ERVLE_10q23.1h"; transcript_id "ERVLE_10q23.1h"; locus "ERVLE_10q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2431"; repClass "LTR"; repEnd "1201"; repFamily "ERVL"; repLeft "-4466"; repStart "947"; chr10 rmsk exon 86012144 86012252 869 + . gene_id "ERVLE_10q23.1h"; transcript_id "ERVLE_10q23.1h"; locus "ERVLE_10q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2431"; repClass "LTR"; repEnd "1326"; repFamily "ERVL"; repLeft "-4341"; repStart "1155"; chr10 rmsk exon 86012533 86012565 3524 + . gene_id "ERVLE_10q23.1h"; transcript_id "ERVLE_10q23.1h"; locus "ERVLE_10q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2431"; repClass "LTR"; repEnd "1825"; repFamily "ERVL"; repLeft "-3842"; repStart "1793"; chr10 rmsk exon 86012923 86014581 3524 + . gene_id "ERVLE_10q23.1h"; transcript_id "ERVLE_10q23.1h"; locus "ERVLE_10q23.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2431"; repClass "LTR"; repEnd "3517"; repFamily "ERVL"; repLeft "-2150"; repStart "1826"; ### HUERSP3B_10q23.1 ### chr10 rmsk gene 86029348 86031163 . + . gene_id "HUERSP3B_10q23.1"; transcript_id "HUERSP3B_10q23.1"; locus "HUERSP3B_10q23.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0085"; model_cov "821"; model_pct "11.1"; chr10 rmsk exon 86029348 86030152 5601 + . gene_id "HUERSP3B_10q23.1"; transcript_id "HUERSP3B_10q23.1"; locus "HUERSP3B_10q23.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0085"; repClass "LTR"; repEnd "6942"; repFamily "ERV1"; repLeft "-476"; repStart "6121"; chr10 rmsk exon 86030690 86031163 2248 + . gene_id "HUERSP3B_10q23.1"; transcript_id "HUERSP3B_10q23.1"; locus "HUERSP3B_10q23.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0085"; repClass "LTR"; repEnd "526"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### ERVLB4_10q23.1c ### chr10 rmsk gene 86096451 86097617 . + . gene_id "ERVLB4_10q23.1c"; transcript_id "ERVLB4_10q23.1c"; locus "ERVLB4_10q23.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1135"; model_cov "572"; model_pct "10.0"; chr10 rmsk exon 86096451 86097011 3716 + . gene_id "ERVLB4_10q23.1c"; transcript_id "ERVLB4_10q23.1c"; locus "ERVLB4_10q23.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1135"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "-846"; repStart "4296"; chr10 rmsk exon 86097548 86097617 256 + . gene_id "ERVLB4_10q23.1c"; transcript_id "ERVLB4_10q23.1c"; locus "ERVLB4_10q23.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1135"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "435"; ### HERVH_10q23.2a ### chr10 rmsk gene 86561238 86566658 . - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0816"; model_cov "4673"; model_pct "60.6"; chr10 rmsk exon 86561238 86561689 2782 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 86561690 86562232 3558 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr10 rmsk exon 86562226 86562486 1700 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chr10 rmsk exon 86562477 86563729 4129 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "4416"; repStart "-1935"; chr10 rmsk exon 86563726 86565801 12996 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "2837"; repFamily "ERV1"; repLeft "800"; repStart "-4876"; chr10 rmsk exon 86565857 86566300 2050 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr10 rmsk exon 86566301 86566658 2338 - . gene_id "HERVH_10q23.2a"; transcript_id "HERVH_10q23.2a"; locus "HERVH_10q23.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0816"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_10q23.2b ### chr10 rmsk gene 86864087 86865600 . + . gene_id "HERVH_10q23.2b"; transcript_id "HERVH_10q23.2b"; locus "HERVH_10q23.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0817"; model_cov "971"; model_pct "12.6"; chr10 rmsk exon 86864087 86865050 7458 + . gene_id "HERVH_10q23.2b"; transcript_id "HERVH_10q23.2b"; locus "HERVH_10q23.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0817"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6742"; chr10 rmsk exon 86865051 86865600 3305 + . gene_id "HERVH_10q23.2b"; transcript_id "HERVH_10q23.2b"; locus "HERVH_10q23.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0817"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_10q23.2 ### chr10 rmsk gene 87031711 87033478 . - . gene_id "MER4_10q23.2"; transcript_id "MER4_10q23.2"; locus "MER4_10q23.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0498"; model_cov "1406"; model_pct "21.3"; chr10 rmsk exon 87031711 87031923 2987 - . gene_id "MER4_10q23.2"; transcript_id "MER4_10q23.2"; locus "MER4_10q23.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0498"; repClass "LTR"; repEnd "1582"; repFamily "ERV1"; repLeft "1321"; repStart "-5016"; chr10 rmsk exon 87031975 87033026 2987 - . gene_id "MER4_10q23.2"; transcript_id "MER4_10q23.2"; locus "MER4_10q23.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0498"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "1"; repStart "-5452"; chr10 rmsk exon 87033030 87033478 3539 - . gene_id "MER4_10q23.2"; transcript_id "MER4_10q23.2"; locus "MER4_10q23.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0498"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERV316A3_10q23.2a ### chr10 rmsk gene 87276938 87278337 . - . gene_id "ERV316A3_10q23.2a"; transcript_id "ERV316A3_10q23.2a"; locus "ERV316A3_10q23.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1857"; model_cov "977"; model_pct "18.7"; chr10 rmsk exon 87276938 87277898 999 - . gene_id "ERV316A3_10q23.2a"; transcript_id "ERV316A3_10q23.2a"; locus "ERV316A3_10q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1857"; repClass "LTR"; repEnd "1020"; repFamily "ERVL"; repLeft "43"; repStart "-4206"; chr10 rmsk exon 87277937 87278337 989 - . gene_id "ERV316A3_10q23.2a"; transcript_id "ERV316A3_10q23.2a"; locus "ERV316A3_10q23.2a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1857"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "7"; repStart "0"; ### ERV316A3_10q23.2b ### chr10 rmsk gene 87459637 87460944 . + . gene_id "ERV316A3_10q23.2b"; transcript_id "ERV316A3_10q23.2b"; locus "ERV316A3_10q23.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1858"; model_cov "674"; model_pct "12.9"; chr10 rmsk exon 87459637 87460037 923 + . gene_id "ERV316A3_10q23.2b"; transcript_id "ERV316A3_10q23.2b"; locus "ERV316A3_10q23.2b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1858"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr10 rmsk exon 87460284 87460944 773 + . gene_id "ERV316A3_10q23.2b"; transcript_id "ERV316A3_10q23.2b"; locus "ERV316A3_10q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1858"; repClass "LTR"; repEnd "919"; repFamily "ERVL"; repLeft "-4307"; repStart "245"; ### HERVL_10q23.2 ### chr10 rmsk gene 87634539 87641235 . - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0867"; model_cov "4389"; model_pct "77.6"; chr10 rmsk exon 87634539 87635089 2393 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 87635090 87638312 22294 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2362"; repStart "0"; chr10 rmsk exon 87638557 87638667 6568 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "1134"; repFamily "ERVL"; repLeft "1027"; repStart "-4520"; chr10 rmsk exon 87639472 87640421 6568 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "1026"; repFamily "ERVL"; repLeft "36"; repStart "-4628"; chr10 rmsk exon 87640663 87640677 622 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "501"; repStart "-39"; chr10 rmsk exon 87640735 87641235 2290 - . gene_id "HERVL_10q23.2"; transcript_id "HERVL_10q23.2"; locus "HERVL_10q23.2"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0867"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "1"; repStart "-46"; ### MER4_10q23.31a ### chr10 rmsk gene 87796235 87803793 . + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0499"; model_cov "6873"; model_pct "100.0"; chr10 rmsk exon 87796235 87796696 3192 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0499"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 87796700 87797246 2688 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr10 rmsk exon 87797234 87797342 394 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr10 rmsk exon 87797387 87797744 1291 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chr10 rmsk exon 87797744 87798382 4325 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "29"; chr10 rmsk exon 87798404 87798623 1369 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "-5614"; repStart "764"; chr10 rmsk exon 87798659 87799378 19447 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "2555"; repFamily "ERV1"; repLeft "-4043"; repStart "1748"; chr10 rmsk exon 87799616 87802524 19447 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "-776"; repStart "2556"; chr10 rmsk exon 87802657 87803344 19447 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0499"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5823"; chr10 rmsk exon 87803346 87803793 3019 + . gene_id "MER4_10q23.31a"; transcript_id "MER4_10q23.31a"; locus "MER4_10q23.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0499"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10q23.31a ### chr10 rmsk gene 88452348 88453612 . + . gene_id "ERV316A3_10q23.31a"; transcript_id "ERV316A3_10q23.31a"; locus "ERV316A3_10q23.31a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1859"; model_cov "795"; model_pct "15.2"; chr10 rmsk exon 88452348 88453115 2051 + . gene_id "ERV316A3_10q23.31a"; transcript_id "ERV316A3_10q23.31a"; locus "ERV316A3_10q23.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1859"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "4326"; chr10 rmsk exon 88453175 88453612 1272 + . gene_id "ERV316A3_10q23.31a"; transcript_id "ERV316A3_10q23.31a"; locus "ERV316A3_10q23.31a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1859"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERV316A3_10q23.31b ### chr10 rmsk gene 88592391 88593627 . - . gene_id "ERV316A3_10q23.31b"; transcript_id "ERV316A3_10q23.31b"; locus "ERV316A3_10q23.31b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1860"; model_cov "1007"; model_pct "19.3"; chr10 rmsk exon 88592391 88592771 1048 - . gene_id "ERV316A3_10q23.31b"; transcript_id "ERV316A3_10q23.31b"; locus "ERV316A3_10q23.31b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1860"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "74"; repStart "0"; chr10 rmsk exon 88592772 88592840 339 - . gene_id "ERV316A3_10q23.31b"; transcript_id "ERV316A3_10q23.31b"; locus "ERV316A3_10q23.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1860"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "5005"; repStart "-153"; chr10 rmsk exon 88592954 88593627 1315 - . gene_id "ERV316A3_10q23.31b"; transcript_id "ERV316A3_10q23.31b"; locus "ERV316A3_10q23.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1860"; repClass "LTR"; repEnd "4726"; repFamily "ERVL"; repLeft "3787"; repStart "-500"; ### ERVLE_10q23.31a ### chr10 rmsk gene 89270016 89271779 . + . gene_id "ERVLE_10q23.31a"; transcript_id "ERVLE_10q23.31a"; locus "ERVLE_10q23.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2434"; model_cov "3022"; model_pct "53.3"; chr10 rmsk exon 89270016 89271779 6419 + . gene_id "ERVLE_10q23.31a"; transcript_id "ERVLE_10q23.31a"; locus "ERVLE_10q23.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2434"; repClass "LTR"; repEnd "5244"; repFamily "ERVL"; repLeft "-423"; repStart "2222"; ### HERVH_10q23.31a ### chr10 rmsk gene 89284720 89290887 . + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0818"; model_cov "5726"; model_pct "74.2"; chr10 rmsk exon 89284720 89285118 2702 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 89285119 89288116 17552 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr10 rmsk exon 89288103 89288562 3007 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "-4112"; repStart "3140"; chr10 rmsk exon 89288554 89289693 6694 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-1394"; repStart "4868"; chr10 rmsk exon 89289691 89289957 1478 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5749"; chr10 rmsk exon 89289951 89290499 3356 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr10 rmsk exon 89290500 89290887 2151 + . gene_id "HERVH_10q23.31a"; transcript_id "HERVH_10q23.31a"; locus "HERVH_10q23.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0818"; repClass "LTR"; repEnd "439"; repFamily "ERV1"; repLeft "-11"; repStart "1"; ### ERVLB4_10q23.31a ### chr10 rmsk gene 89872757 89875690 . - . gene_id "ERVLB4_10q23.31a"; transcript_id "ERVLB4_10q23.31a"; locus "ERVLB4_10q23.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1140"; model_cov "1428"; model_pct "25.0"; chr10 rmsk exon 89872757 89872834 289 - . gene_id "ERVLB4_10q23.31a"; transcript_id "ERVLB4_10q23.31a"; locus "ERVLB4_10q23.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1140"; repClass "LTR"; repEnd "2739"; repFamily "ERVL"; repLeft "2666"; repStart "-2975"; chr10 rmsk exon 89874449 89875690 1070 - . gene_id "ERVLB4_10q23.31a"; transcript_id "ERVLB4_10q23.31a"; locus "ERVLB4_10q23.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1140"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "1292"; repStart "-3067"; ### HERVH_10q23.31b ### chr10 rmsk gene 90081018 90086792 . - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0819"; model_cov "4919"; model_pct "63.8"; chr10 rmsk exon 90081018 90081469 3336 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 90081470 90081847 2512 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr10 rmsk exon 90081850 90082063 1424 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "5600"; repStart "-1896"; chr10 rmsk exon 90082065 90082727 4305 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr10 rmsk exon 90082722 90083234 3378 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr10 rmsk exon 90083225 90083374 923 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 90083354 90086338 20026 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr10 rmsk exon 90086341 90086792 3254 - . gene_id "HERVH_10q23.31b"; transcript_id "HERVH_10q23.31b"; locus "HERVH_10q23.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0819"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_10q23.31b ### chr10 rmsk gene 90087053 90092706 . + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0503"; model_cov "4996"; model_pct "75.7"; chr10 rmsk exon 90087053 90087964 2528 + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0503"; repClass "LTR"; repEnd "1029"; repFamily "ERV1"; repLeft "-5569"; repStart "36"; chr10 rmsk exon 90087977 90088651 3701 + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0503"; repClass "LTR"; repEnd "2502"; repFamily "ERV1"; repLeft "-4096"; repStart "1756"; chr10 rmsk exon 90089173 90089696 1822 + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0503"; repClass "LTR"; repEnd "3320"; repFamily "ERV1"; repLeft "-3278"; repStart "2737"; chr10 rmsk exon 90089701 90092233 14872 + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0503"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "3919"; chr10 rmsk exon 90092245 90092706 2825 + . gene_id "MER4_10q23.31b"; transcript_id "MER4_10q23.31b"; locus "MER4_10q23.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0503"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3B_10q23.31 ### chr10 rmsk gene 90135631 90140036 . + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0086"; model_cov "3022"; model_pct "40.7"; chr10 rmsk exon 90135631 90136087 2630 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "642"; repFamily "ERV1"; repLeft "-2"; repStart "185"; chr10 rmsk exon 90136179 90136339 634 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "411"; chr10 rmsk exon 90136346 90138172 5869 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "1383"; repFamily "ERV1"; repLeft "-6035"; repStart "-754"; chr10 rmsk exon 90138170 90138572 1782 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "-2007"; repStart "5019"; chr10 rmsk exon 90138584 90138685 428 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "5473"; repFamily "ERV1"; repLeft "-1945"; repStart "5345"; chr10 rmsk exon 90139188 90139403 1142 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "7418"; repFamily "ERV1"; repLeft "0"; repStart "7201"; chr10 rmsk exon 90139410 90140036 2528 + . gene_id "HUERSP3B_10q23.31"; transcript_id "HUERSP3B_10q23.31"; locus "HUERSP3B_10q23.31"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0086"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### HERVH_10q23.31c ### chr10 rmsk gene 90294983 90300722 . + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0820"; model_cov "4907"; model_pct "63.6"; chr10 rmsk exon 90294983 90295414 2573 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 90295415 90298397 19269 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr10 rmsk exon 90298392 90298539 892 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr10 rmsk exon 90298530 90299032 3343 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr10 rmsk exon 90299035 90299696 4274 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr10 rmsk exon 90299694 90299912 1384 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "-1896"; repStart "5597"; chr10 rmsk exon 90299915 90300291 2437 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr10 rmsk exon 90300292 90300722 2566 + . gene_id "HERVH_10q23.31c"; transcript_id "HERVH_10q23.31c"; locus "HERVH_10q23.31c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0820"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_10q23.31b ### chr10 rmsk gene 90336973 90340646 . + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2436"; model_cov "2652"; model_pct "46.8"; chr10 rmsk exon 90336973 90337093 315 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "237"; repFamily "ERVL"; repLeft "-5430"; repStart "116"; chr10 rmsk exon 90337356 90337876 350 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "1189"; repFamily "ERVL"; repLeft "-4478"; repStart "649"; chr10 rmsk exon 90337966 90338157 596 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "2070"; repFamily "ERVL"; repLeft "-3597"; repStart "1868"; chr10 rmsk exon 90338660 90339073 532 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "2539"; repFamily "ERVL"; repLeft "-3128"; repStart "2074"; chr10 rmsk exon 90339250 90339933 1245 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "3471"; repFamily "ERVL"; repLeft "-2196"; repStart "2675"; chr10 rmsk exon 90340235 90340646 979 + . gene_id "ERVLE_10q23.31b"; transcript_id "ERVLE_10q23.31b"; locus "ERVLE_10q23.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2436"; repClass "LTR"; repEnd "4268"; repFamily "ERVL"; repLeft "-1399"; repStart "3740"; ### MER61_10q23.31 ### chr10 rmsk gene 90412474 90416300 . + . gene_id "MER61_10q23.31"; transcript_id "MER61_10q23.31"; locus "MER61_10q23.31"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0253"; model_cov "4224"; model_pct "81.0"; chr10 rmsk exon 90412474 90412541 379 + . gene_id "MER61_10q23.31"; transcript_id "MER61_10q23.31"; locus "MER61_10q23.31"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0253"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "631"; chr10 rmsk exon 90412582 90415719 17138 + . gene_id "MER61_10q23.31"; transcript_id "MER61_10q23.31"; locus "MER61_10q23.31"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0253"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-1139"; repStart "213"; chr10 rmsk exon 90415715 90415997 1841 + . gene_id "MER61_10q23.31"; transcript_id "MER61_10q23.31"; locus "MER61_10q23.31"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0253"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4927"; chr10 rmsk exon 90415998 90416300 1602 + . gene_id "MER61_10q23.31"; transcript_id "MER61_10q23.31"; locus "MER61_10q23.31"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0253"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_10q23.31a ### chr10 rmsk gene 90545633 90552063 . + . gene_id "HERVL_10q23.31a"; transcript_id "HERVL_10q23.31a"; locus "HERVL_10q23.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0869"; model_cov "5653"; model_pct "100.0"; chr10 rmsk exon 90545633 90546075 2807 + . gene_id "HERVL_10q23.31a"; transcript_id "HERVL_10q23.31a"; locus "HERVL_10q23.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0869"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 90546076 90551641 22838 + . gene_id "HERVL_10q23.31a"; transcript_id "HERVL_10q23.31a"; locus "HERVL_10q23.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0869"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 90551642 90552063 2957 + . gene_id "HERVL_10q23.31a"; transcript_id "HERVL_10q23.31a"; locus "HERVL_10q23.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0869"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_10q23.31b ### chr10 rmsk gene 90604944 90611478 . - . gene_id "HERVL_10q23.31b"; transcript_id "HERVL_10q23.31b"; locus "HERVL_10q23.31b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0870"; model_cov "5653"; model_pct "100.0"; chr10 rmsk exon 90604944 90604983 2049 - . gene_id "HERVL_10q23.31b"; transcript_id "HERVL_10q23.31b"; locus "HERVL_10q23.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0870"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "384"; repStart "0"; chr10 rmsk exon 90605043 90605416 2049 - . gene_id "HERVL_10q23.31b"; transcript_id "HERVL_10q23.31b"; locus "HERVL_10q23.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0870"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "2"; repStart "-61"; chr10 rmsk exon 90605417 90611050 44021 - . gene_id "HERVL_10q23.31b"; transcript_id "HERVL_10q23.31b"; locus "HERVL_10q23.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0870"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 90611057 90611478 3096 - . gene_id "HERVL_10q23.31b"; transcript_id "HERVL_10q23.31b"; locus "HERVL_10q23.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0870"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "1"; repStart "-10"; ### ERVL_10q23.31 ### chr10 rmsk gene 90654709 90658465 . - . gene_id "ERVL_10q23.31"; transcript_id "ERVL_10q23.31"; locus "ERVL_10q23.31"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0291"; model_cov "3174"; model_pct "55.1"; chr10 rmsk exon 90654709 90655284 3182 - . gene_id "ERVL_10q23.31"; transcript_id "ERVL_10q23.31"; locus "ERVL_10q23.31"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0291"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 90655297 90658465 18885 - . gene_id "ERVL_10q23.31"; transcript_id "ERVL_10q23.31"; locus "ERVL_10q23.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0291"; repClass "LTR"; repEnd "5745"; repFamily "ERVL"; repLeft "2571"; repStart "-12"; ### ERVLB4_10q23.31b ### chr10 rmsk gene 90698715 90704136 . - . gene_id "ERVLB4_10q23.31b"; transcript_id "ERVLB4_10q23.31b"; locus "ERVLB4_10q23.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1141"; model_cov "5663"; model_pct "99.1"; chr10 rmsk exon 90698715 90704136 22176 - . gene_id "ERVLB4_10q23.31b"; transcript_id "ERVLB4_10q23.31b"; locus "ERVLB4_10q23.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1141"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "1"; repStart "-50"; ### MER4B_10q23.31a ### chr10 rmsk gene 90805247 90807234 . + . gene_id "MER4B_10q23.31a"; transcript_id "MER4B_10q23.31a"; locus "MER4B_10q23.31a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0289"; model_cov "1499"; model_pct "22.2"; chr10 rmsk exon 90805247 90805362 479 + . gene_id "MER4B_10q23.31a"; transcript_id "MER4B_10q23.31a"; locus "MER4B_10q23.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0289"; repClass "LTR"; repEnd "3533"; repFamily "ERV1"; repLeft "-3225"; repStart "3458"; chr10 rmsk exon 90805539 90806316 4516 + . gene_id "MER4B_10q23.31a"; transcript_id "MER4B_10q23.31a"; locus "MER4B_10q23.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0289"; repClass "LTR"; repEnd "3613"; repFamily "ERV1"; repLeft "-3145"; repStart "2777"; chr10 rmsk exon 90806629 90807234 4516 + . gene_id "MER4B_10q23.31a"; transcript_id "MER4B_10q23.31a"; locus "MER4B_10q23.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0289"; repClass "LTR"; repEnd "3767"; repFamily "ERV1"; repLeft "-2991"; repStart "3179"; ### HERVH_10q23.31d ### chr10 rmsk gene 90807289 90813258 . + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0821"; model_cov "5159"; model_pct "66.9"; chr10 rmsk exon 90807289 90807737 3458 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 90807740 90811408 17551 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "3746"; repFamily "ERV1"; repLeft "-3967"; repStart "1"; chr10 rmsk exon 90811404 90811547 1151 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3850"; chr10 rmsk exon 90811550 90812212 4493 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr10 rmsk exon 90812214 90812430 1447 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr10 rmsk exon 90812429 90812809 2643 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 90812810 90813258 3610 + . gene_id "HERVH_10q23.31d"; transcript_id "HERVH_10q23.31d"; locus "HERVH_10q23.31d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0821"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4B_10q23.31b ### chr10 rmsk gene 90814624 90817142 . + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0290"; model_cov "2022"; model_pct "29.9"; chr10 rmsk exon 90814624 90815079 5726 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "4567"; repFamily "ERV1"; repLeft "-2191"; repStart "4113"; chr10 rmsk exon 90815372 90815528 5726 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "4725"; repFamily "ERV1"; repLeft "-2033"; repStart "4568"; chr10 rmsk exon 90815983 90816270 5726 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "5227"; repFamily "ERV1"; repLeft "-1531"; repStart "4726"; chr10 rmsk exon 90816265 90816348 409 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "-1347"; repStart "5314"; chr10 rmsk exon 90816337 90816877 2489 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "6102"; repFamily "ERV1"; repLeft "-656"; repStart "5557"; chr10 rmsk exon 90816877 90817142 1385 + . gene_id "MER4B_10q23.31b"; transcript_id "MER4B_10q23.31b"; locus "MER4B_10q23.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0290"; repClass "LTR"; repEnd "5735"; repFamily "ERV1"; repLeft "-1023"; repStart "5467"; ### ERVLB4_10q23.31c ### chr10 rmsk gene 90956946 90961117 . - . gene_id "ERVLB4_10q23.31c"; transcript_id "ERVLB4_10q23.31c"; locus "ERVLB4_10q23.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1142"; model_cov "2899"; model_pct "50.7"; chr10 rmsk exon 90956946 90957970 1762 - . gene_id "ERVLB4_10q23.31c"; transcript_id "ERVLB4_10q23.31c"; locus "ERVLB4_10q23.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1142"; repClass "LTR"; repEnd "5306"; repFamily "ERVL"; repLeft "4289"; repStart "-408"; chr10 rmsk exon 90959423 90959738 779 - . gene_id "ERVLB4_10q23.31c"; transcript_id "ERVLB4_10q23.31c"; locus "ERVLB4_10q23.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1142"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "3997"; repStart "-1396"; chr10 rmsk exon 90959769 90961117 2877 - . gene_id "ERVLB4_10q23.31c"; transcript_id "ERVLB4_10q23.31c"; locus "ERVLB4_10q23.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1142"; repClass "LTR"; repEnd "3929"; repFamily "ERVL"; repLeft "2368"; repStart "-1785"; ### ERV316A3_10q23.31c ### chr10 rmsk gene 91099693 91102310 . + . gene_id "ERV316A3_10q23.31c"; transcript_id "ERV316A3_10q23.31c"; locus "ERV316A3_10q23.31c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1861"; model_cov "2375"; model_pct "45.4"; chr10 rmsk exon 91099693 91099852 463 + . gene_id "ERV316A3_10q23.31c"; transcript_id "ERV316A3_10q23.31c"; locus "ERV316A3_10q23.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1861"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-4872"; repStart "187"; chr10 rmsk exon 91100028 91101835 3556 + . gene_id "ERV316A3_10q23.31c"; transcript_id "ERV316A3_10q23.31c"; locus "ERV316A3_10q23.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1861"; repClass "LTR"; repEnd "2433"; repFamily "ERVL"; repLeft "-2793"; repStart "582"; chr10 rmsk exon 91101851 91102190 1368 + . gene_id "ERV316A3_10q23.31c"; transcript_id "ERV316A3_10q23.31c"; locus "ERV316A3_10q23.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1861"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "4820"; chr10 rmsk exon 91102212 91102310 267 + . gene_id "ERV316A3_10q23.31c"; transcript_id "ERV316A3_10q23.31c"; locus "ERV316A3_10q23.31c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1861"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "-324"; repStart "1"; ### HERVH_10q23.32 ### chr10 rmsk gene 91301350 91307329 . - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0822"; model_cov "5424"; model_pct "70.3"; chr10 rmsk exon 91301350 91301702 2310 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 91301703 91302070 2060 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr10 rmsk exon 91302055 91302284 1456 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "5826"; repFamily "ERV1"; repLeft "5600"; repStart "-1887"; chr10 rmsk exon 91302286 91303936 10250 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3492"; repStart "-2564"; chr10 rmsk exon 91303927 91304085 956 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3134"; repStart "-4423"; chr10 rmsk exon 91304062 91306919 13719 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr10 rmsk exon 91306922 91307329 2503 - . gene_id "HERVH_10q23.32"; transcript_id "HERVH_10q23.32"; locus "HERVH_10q23.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0822"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; ### ERVLB4_10q23.33a ### chr10 rmsk gene 92410802 92411764 . - . gene_id "ERVLB4_10q23.33a"; transcript_id "ERVLB4_10q23.33a"; locus "ERVLB4_10q23.33a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1143"; model_cov "644"; model_pct "11.3"; chr10 rmsk exon 92410802 92411252 3361 - . gene_id "ERVLB4_10q23.33a"; transcript_id "ERVLB4_10q23.33a"; locus "ERVLB4_10q23.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1143"; repClass "LTR"; repEnd "972"; repFamily "ERVL"; repLeft "528"; repStart "-4742"; chr10 rmsk exon 92411564 92411764 3361 - . gene_id "ERVLB4_10q23.33a"; transcript_id "ERVLB4_10q23.33a"; locus "ERVLB4_10q23.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1143"; repClass "LTR"; repEnd "527"; repFamily "ERVL"; repLeft "327"; repStart "-5187"; ### HERVL_10q23.33a ### chr10 rmsk gene 93228904 93235749 . - . gene_id "HERVL_10q23.33a"; transcript_id "HERVL_10q23.33a"; locus "HERVL_10q23.33a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0871"; model_cov "5652"; model_pct "100.0"; chr10 rmsk exon 93228904 93229337 3067 - . gene_id "HERVL_10q23.33a"; transcript_id "HERVL_10q23.33a"; locus "HERVL_10q23.33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0871"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 93229338 93234936 45649 - . gene_id "HERVL_10q23.33a"; transcript_id "HERVL_10q23.33a"; locus "HERVL_10q23.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0871"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "38"; repStart "0"; chr10 rmsk exon 93235241 93235283 45649 - . gene_id "HERVL_10q23.33a"; transcript_id "HERVL_10q23.33a"; locus "HERVL_10q23.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0871"; repClass "LTR"; repEnd "37"; repFamily "ERVL"; repLeft "1"; repStart "-5617"; chr10 rmsk exon 93235284 93235749 2775 - . gene_id "HERVL_10q23.33a"; transcript_id "HERVL_10q23.33a"; locus "HERVL_10q23.33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0871"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HARLEQUIN_10q23.33 ### chr10 rmsk gene 94384486 94392604 . + . gene_id "HARLEQUIN_10q23.33"; transcript_id "HARLEQUIN_10q23.33"; locus "HARLEQUIN_10q23.33"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0128"; model_cov "6894"; model_pct "100.0"; chr10 rmsk exon 94384486 94384948 3984 + . gene_id "HARLEQUIN_10q23.33"; transcript_id "HARLEQUIN_10q23.33"; locus "HARLEQUIN_10q23.33"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0128"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 94384949 94387397 30134 + . gene_id "HARLEQUIN_10q23.33"; transcript_id "HARLEQUIN_10q23.33"; locus "HARLEQUIN_10q23.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0128"; repClass "LTR"; repEnd "2438"; repFamily "ERV1"; repLeft "-4458"; repStart "1"; chr10 rmsk exon 94387699 94392145 36857 + . gene_id "HARLEQUIN_10q23.33"; transcript_id "HARLEQUIN_10q23.33"; locus "HARLEQUIN_10q23.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0128"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2439"; chr10 rmsk exon 94392146 94392604 4104 + . gene_id "HARLEQUIN_10q23.33"; transcript_id "HARLEQUIN_10q23.33"; locus "HARLEQUIN_10q23.33"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0128"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_10q23.33b ### chr10 rmsk gene 94479974 94480644 . - . gene_id "ERVLB4_10q23.33b"; transcript_id "ERVLB4_10q23.33b"; locus "ERVLB4_10q23.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1144"; model_cov "684"; model_pct "12.0"; chr10 rmsk exon 94479974 94480644 4372 - . gene_id "ERVLB4_10q23.33b"; transcript_id "ERVLB4_10q23.33b"; locus "ERVLB4_10q23.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1144"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "1419"; repStart "-3611"; ### HERVL_10q23.33b ### chr10 rmsk gene 94650532 94655169 . + . gene_id "HERVL_10q23.33b"; transcript_id "HERVL_10q23.33b"; locus "HERVL_10q23.33b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0872"; model_cov "4342"; model_pct "76.8"; chr10 rmsk exon 94650532 94650935 2889 + . gene_id "HERVL_10q23.33b"; transcript_id "HERVL_10q23.33b"; locus "HERVL_10q23.33b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0872"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "26"; chr10 rmsk exon 94650940 94655169 26711 + . gene_id "HERVL_10q23.33b"; transcript_id "HERVL_10q23.33b"; locus "HERVL_10q23.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0872"; repClass "LTR"; repEnd "4347"; repFamily "ERVL"; repLeft "-1307"; repStart "5"; ### ERVLB4_10q23.33c ### chr10 rmsk gene 94666525 94672542 . - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1145"; model_cov "4984"; model_pct "87.2"; chr10 rmsk exon 94666525 94666897 1687 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "14"; repStart "-20"; chr10 rmsk exon 94666913 94669031 9518 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3492"; repStart "0"; chr10 rmsk exon 94669016 94671210 6293 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "422"; repStart "-2950"; chr10 rmsk exon 94671519 94671956 6293 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "1"; repStart "-5293"; chr10 rmsk exon 94671957 94671998 454 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "331"; repStart "0"; chr10 rmsk exon 94672041 94672155 454 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "218"; repStart "-67"; chr10 rmsk exon 94672339 94672542 916 - . gene_id "ERVLB4_10q23.33c"; transcript_id "ERVLB4_10q23.33c"; locus "ERVLB4_10q23.33c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1145"; repClass "LTR"; repEnd "202"; repFamily "ERVL"; repLeft "1"; repStart "-195"; ### HERVL74_10q23.33 ### chr10 rmsk gene 94673087 94675530 . + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0064"; model_cov "1126"; model_pct "19.8"; chr10 rmsk exon 94673087 94673157 418 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "3641"; repFamily "ERVL"; repLeft "-2044"; repStart "3571"; chr10 rmsk exon 94673182 94673269 523 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "4005"; repFamily "ERVL"; repLeft "-1680"; repStart "3918"; chr10 rmsk exon 94673640 94673684 259 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "4029"; chr10 rmsk exon 94673676 94674087 2279 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "4942"; repFamily "ERVL"; repLeft "-743"; repStart "4589"; chr10 rmsk exon 94674425 94674746 2279 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "5262"; repFamily "ERVL"; repLeft "-423"; repStart "4943"; chr10 rmsk exon 94674759 94674987 760 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "-44"; repStart "5388"; chr10 rmsk exon 94675009 94675530 1678 + . gene_id "HERVL74_10q23.33"; transcript_id "HERVL74_10q23.33"; locus "HERVL74_10q23.33"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0064"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "-24"; repStart "6"; ### HERV9_10q23.33 ### chr10 rmsk gene 94763774 94774155 . - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0128"; model_cov "8398"; model_pct "99.5"; chr10 rmsk exon 94763774 94764524 5570 - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0128"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 94764525 94772782 65494 - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0128"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "169"; repStart "0"; chr10 rmsk exon 94773081 94773213 65494 - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0128"; repClass "LTR"; repEnd "168"; repFamily "ERV1"; repLeft "37"; repStart "-8268"; chr10 rmsk exon 94773224 94773459 1753 - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0128"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "453"; repStart "0"; chr10 rmsk exon 94773461 94774155 4508 - . gene_id "HERV9_10q23.33"; transcript_id "HERV9_10q23.33"; locus "HERV9_10q23.33"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0128"; repClass "LTR"; repEnd "822"; repFamily "ERV1"; repLeft "1"; repStart "-4"; ### HERVW_10q23.33 ### chr10 rmsk gene 94834569 94841534 . - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0206"; model_cov "6328"; model_pct "73.4"; chr10 rmsk exon 94834569 94834890 2549 - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0206"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "3"; repStart "-453"; chr10 rmsk exon 94834893 94835184 2396 - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0206"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr10 rmsk exon 94835175 94835208 267 - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0206"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7515"; repStart "-1078"; chr10 rmsk exon 94835209 94841005 26860 - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0206"; repClass "LTR"; repEnd "6005"; repFamily "ERV1"; repLeft "1"; repStart "-2621"; chr10 rmsk exon 94841006 94841534 3996 - . gene_id "HERVW_10q23.33"; transcript_id "HERVW_10q23.33"; locus "HERVW_10q23.33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0206"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "253"; repStart "0"; ### MER4_10q23.33 ### chr10 rmsk gene 94924812 94928197 . - . gene_id "MER4_10q23.33"; transcript_id "MER4_10q23.33"; locus "MER4_10q23.33"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0504"; model_cov "2527"; model_pct "38.3"; chr10 rmsk exon 94924812 94925422 3548 - . gene_id "MER4_10q23.33"; transcript_id "MER4_10q23.33"; locus "MER4_10q23.33"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0504"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 94925424 94927571 12729 - . gene_id "MER4_10q23.33"; transcript_id "MER4_10q23.33"; locus "MER4_10q23.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0504"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "4426"; repStart "-5"; chr10 rmsk exon 94927868 94928197 12729 - . gene_id "MER4_10q23.33"; transcript_id "MER4_10q23.33"; locus "MER4_10q23.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0504"; repClass "LTR"; repEnd "4425"; repFamily "ERV1"; repLeft "4065"; repStart "-2173"; ### HERVIP10FH_10q23.33 ### chr10 rmsk gene 94991380 94998809 . - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0111"; model_cov "7857"; model_pct "100.0"; chr10 rmsk exon 94991380 94991919 2760 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "543"; repFamily "ERV1"; repLeft "1"; repStart "-66"; chr10 rmsk exon 94991922 94994448 8378 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "5101"; repFamily "ERV1"; repLeft "2563"; repStart "-1"; chr10 rmsk exon 94994705 94997140 10921 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "2562"; repFamily "ERV1"; repLeft "-1576"; repStart "-2540"; chr10 rmsk exon 94997121 94997409 1125 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "170"; repStart "-4595"; chr10 rmsk exon 94997386 94997562 996 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "946"; repStart "-3990"; chr10 rmsk exon 94997548 94998218 2359 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "-1822"; repFamily "ERV1"; repLeft "-2500"; repStart "-6924"; chr10 rmsk exon 94998221 94998809 2807 - . gene_id "HERVIP10FH_10q23.33"; transcript_id "HERVIP10FH_10q23.33"; locus "HERVIP10FH_10q23.33"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10FH-int_0111"; repClass "LTR"; repEnd "588"; repFamily "ERV1"; repLeft "-23"; repStart "-21"; ### HUERSP3_10q23.33a ### chr10 rmsk gene 95123975 95127447 . - . gene_id "HUERSP3_10q23.33a"; transcript_id "HUERSP3_10q23.33a"; locus "HUERSP3_10q23.33a"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0131"; model_cov "3542"; model_pct "39.7"; chr10 rmsk exon 95123975 95124725 4047 - . gene_id "HUERSP3_10q23.33a"; transcript_id "HUERSP3_10q23.33a"; locus "HUERSP3_10q23.33a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0131"; repClass "LTR"; repEnd "6969"; repFamily "ERV1"; repLeft "6217"; repStart "-1950"; chr10 rmsk exon 95124731 95127447 29793 - . gene_id "HUERSP3_10q23.33a"; transcript_id "HUERSP3_10q23.33a"; locus "HUERSP3_10q23.33a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0131"; repClass "LTR"; repEnd "6070"; repFamily "ERV1"; repLeft "3280"; repStart "-2849"; ### HUERSP3_10q23.33b ### chr10 rmsk gene 95127496 95131937 . - . gene_id "HUERSP3_10q23.33b"; transcript_id "HUERSP3_10q23.33b"; locus "HUERSP3_10q23.33b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0132"; model_cov "2216"; model_pct "24.8"; chr10 rmsk exon 95127496 95128840 29793 - . gene_id "HUERSP3_10q23.33b"; transcript_id "HUERSP3_10q23.33b"; locus "HUERSP3_10q23.33b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0132"; repClass "LTR"; repEnd "6070"; repFamily "ERV1"; repLeft "4687"; repStart "-2849"; chr10 rmsk exon 95131104 95131937 29793 - . gene_id "HUERSP3_10q23.33b"; transcript_id "HUERSP3_10q23.33b"; locus "HUERSP3_10q23.33b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0132"; repClass "LTR"; repEnd "1895"; repFamily "ERV1"; repLeft "1062"; repStart "-7024"; ### HUERSP3_10q23.33c ### chr10 rmsk gene 95132811 95134563 . - . gene_id "HUERSP3_10q23.33c"; transcript_id "HUERSP3_10q23.33c"; locus "HUERSP3_10q23.33c"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0133"; model_cov "1044"; model_pct "11.7"; chr10 rmsk exon 95132811 95133902 4173 - . gene_id "HUERSP3_10q23.33c"; transcript_id "HUERSP3_10q23.33c"; locus "HUERSP3_10q23.33c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0133"; repClass "LTR"; repEnd "2568"; repFamily "ERV1"; repLeft "1524"; repStart "-6351"; chr10 rmsk exon 95133925 95134563 2756 - . gene_id "HUERSP3_10q23.33c"; transcript_id "HUERSP3_10q23.33c"; locus "HUERSP3_10q23.33c"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0133"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_10q23.33 ### chr10 rmsk gene 95181009 95183369 . + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; category "internal"; intModel "MER101-int"; locid "MER101-int_0265"; model_cov "2090"; model_pct "31.5"; chr10 rmsk exon 95181009 95181273 604 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-6227"; repStart "163"; chr10 rmsk exon 95181279 95181514 858 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "-3873"; repStart "2504"; chr10 rmsk exon 95181624 95182018 1961 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "3132"; repFamily "ERV1"; repLeft "-3507"; repStart "2756"; chr10 rmsk exon 95182015 95182480 1387 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3297"; chr10 rmsk exon 95182484 95182805 1000 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-2704"; repStart "3665"; chr10 rmsk exon 95182914 95183369 1767 + . gene_id "MER101_10q23.33"; transcript_id "MER101_10q23.33"; locus "MER101_10q23.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0265"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "-2258"; repStart "3937"; ### ERV316A3_10q23.33 ### chr10 rmsk gene 95232500 95234121 . - . gene_id "ERV316A3_10q23.33"; transcript_id "ERV316A3_10q23.33"; locus "ERV316A3_10q23.33"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1862"; model_cov "1707"; model_pct "32.7"; chr10 rmsk exon 95232500 95234121 3785 - . gene_id "ERV316A3_10q23.33"; transcript_id "ERV316A3_10q23.33"; locus "ERV316A3_10q23.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1862"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "2875"; repStart "-644"; ### HERVW_10q24.1 ### chr10 rmsk gene 95717359 95724870 . - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0207"; model_cov "5984"; model_pct "69.4"; chr10 rmsk exon 95717359 95717686 2242 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr10 rmsk exon 95717687 95717979 2236 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr10 rmsk exon 95717973 95718008 295 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "7545"; repFamily "ERV1"; repLeft "7510"; repStart "-1081"; chr10 rmsk exon 95718005 95718168 1222 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6986"; repStart "-1479"; chr10 rmsk exon 95718161 95721637 27922 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "2430"; repStart "-2724"; chr10 rmsk exon 95721623 95722242 4465 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1399"; repStart "-6612"; chr10 rmsk exon 95722689 95723882 10025 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "1412"; repFamily "ERV1"; repLeft "181"; repStart "-7214"; chr10 rmsk exon 95724187 95724362 10025 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "180"; repFamily "ERV1"; repLeft "1"; repStart "-8446"; chr10 rmsk exon 95724363 95724870 3416 - . gene_id "HERVW_10q24.1"; transcript_id "HERVW_10q24.1"; locus "HERVW_10q24.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0207"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVH_10q24.1 ### chr10 rmsk gene 96733005 96736618 . + . gene_id "HERVH_10q24.1"; transcript_id "HERVH_10q24.1"; locus "HERVH_10q24.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0823"; model_cov "2593"; model_pct "33.6"; chr10 rmsk exon 96733005 96733411 2315 + . gene_id "HERVH_10q24.1"; transcript_id "HERVH_10q24.1"; locus "HERVH_10q24.1"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0823"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 96733418 96735618 15569 + . gene_id "HERVH_10q24.1"; transcript_id "HERVH_10q24.1"; locus "HERVH_10q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0823"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "785"; chr10 rmsk exon 96735596 96736184 2566 + . gene_id "HERVH_10q24.1"; transcript_id "HERVH_10q24.1"; locus "HERVH_10q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0823"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 96736185 96736618 2748 + . gene_id "HERVH_10q24.1"; transcript_id "HERVH_10q24.1"; locus "HERVH_10q24.1"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0823"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_10q24.2 ### chr10 rmsk gene 97555464 97561807 . - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0129"; model_cov "5448"; model_pct "79.0"; chr10 rmsk exon 97555464 97555942 4110 - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0129"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 97555943 97559474 24034 - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0129"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr10 rmsk exon 97559474 97560456 6349 - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0129"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr10 rmsk exon 97560442 97561325 6384 - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0129"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr10 rmsk exon 97561326 97561807 3925 - . gene_id "HARLEQUIN_10q24.2"; transcript_id "HARLEQUIN_10q24.2"; locus "HARLEQUIN_10q24.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0129"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_10q24.2a ### chr10 rmsk gene 97562298 97564296 . - . gene_id "HERVH_10q24.2a"; transcript_id "HERVH_10q24.2a"; locus "HERVH_10q24.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0824"; model_cov "1473"; model_pct "19.1"; chr10 rmsk exon 97562298 97562848 2758 - . gene_id "HERVH_10q24.2a"; transcript_id "HERVH_10q24.2a"; locus "HERVH_10q24.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0824"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 97562849 97563403 3559 - . gene_id "HERVH_10q24.2a"; transcript_id "HERVH_10q24.2a"; locus "HERVH_10q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0824"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr10 rmsk exon 97563397 97564296 5348 - . gene_id "HERVH_10q24.2a"; transcript_id "HERVH_10q24.2a"; locus "HERVH_10q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0824"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5099"; repStart "-1697"; ### ERVLE_10q24.2 ### chr10 rmsk gene 97695971 97699483 . + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2439"; model_cov "1019"; model_pct "18.0"; chr10 rmsk exon 97695971 97696448 2828 + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2439"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-1199"; repStart "3987"; chr10 rmsk exon 97696759 97696829 2828 + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2439"; repClass "LTR"; repEnd "4529"; repFamily "ERVL"; repLeft "-1138"; repStart "4469"; chr10 rmsk exon 97697148 97697358 2828 + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2439"; repClass "LTR"; repEnd "4743"; repFamily "ERVL"; repLeft "-924"; repStart "4530"; chr10 rmsk exon 97698904 97699051 765 + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2439"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "-523"; repStart "5006"; chr10 rmsk exon 97699352 97699483 765 + . gene_id "ERVLE_10q24.2"; transcript_id "ERVLE_10q24.2"; locus "ERVLE_10q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2439"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "-395"; repStart "5145"; ### ERV316A3_10q24.2 ### chr10 rmsk gene 98770367 98772672 . + . gene_id "ERV316A3_10q24.2"; transcript_id "ERV316A3_10q24.2"; locus "ERV316A3_10q24.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1863"; model_cov "1727"; model_pct "33.0"; chr10 rmsk exon 98770367 98770785 1445 + . gene_id "ERV316A3_10q24.2"; transcript_id "ERV316A3_10q24.2"; locus "ERV316A3_10q24.2"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1863"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "8"; chr10 rmsk exon 98770982 98772672 5448 + . gene_id "ERV316A3_10q24.2"; transcript_id "ERV316A3_10q24.2"; locus "ERV316A3_10q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1863"; repClass "LTR"; repEnd "1911"; repFamily "ERVL"; repLeft "-3315"; repStart "184"; ### HERVH_10q24.2b ### chr10 rmsk gene 99260264 99265383 . + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0825"; model_cov "4438"; model_pct "57.5"; chr10 rmsk exon 99260264 99260330 528 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "397"; chr10 rmsk exon 99260331 99260757 1637 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr10 rmsk exon 99260783 99262833 13174 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "800"; chr10 rmsk exon 99262834 99263064 1433 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "-4127"; repStart "3357"; chr10 rmsk exon 99263054 99263871 3617 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "4859"; chr10 rmsk exon 99263863 99264075 1545 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "5957"; repFamily "ERV1"; repLeft "-1756"; repStart "5756"; chr10 rmsk exon 99264387 99264451 1545 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5958"; chr10 rmsk exon 99264445 99264996 3526 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr10 rmsk exon 99264997 99265383 2783 + . gene_id "HERVH_10q24.2b"; transcript_id "HERVH_10q24.2b"; locus "HERVH_10q24.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0825"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_10q24.2 ### chr10 rmsk gene 99820812 99827988 . - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0081"; model_cov "6068"; model_pct "80.5"; chr10 rmsk exon 99820812 99821797 8326 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 99821893 99827959 54777 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "6069"; repFamily "ERVK"; repLeft "1"; repStart "-1467"; chr10 rmsk exon 99827960 99827988 254 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "941"; repStart "0"; ### MER4_10q24.2 ### chr10 rmsk gene 100033668 100035779 . + . gene_id "MER4_10q24.2"; transcript_id "MER4_10q24.2"; locus "MER4_10q24.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0505"; model_cov "1175"; model_pct "17.8"; chr10 rmsk exon 100033668 100034487 6451 + . gene_id "MER4_10q24.2"; transcript_id "MER4_10q24.2"; locus "MER4_10q24.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0505"; repClass "LTR"; repEnd "6208"; repFamily "ERV1"; repLeft "-390"; repStart "5422"; chr10 rmsk exon 100034758 100035134 6451 + . gene_id "MER4_10q24.2"; transcript_id "MER4_10q24.2"; locus "MER4_10q24.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0505"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "6209"; chr10 rmsk exon 100035145 100035236 971 + . gene_id "MER4_10q24.2"; transcript_id "MER4_10q24.2"; locus "MER4_10q24.2"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0505"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "-539"; repStart "30"; chr10 rmsk exon 100035293 100035779 2487 + . gene_id "MER4_10q24.2"; transcript_id "MER4_10q24.2"; locus "MER4_10q24.2"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0505"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "126"; ### HERVH_10q24.31a ### chr10 rmsk gene 100380920 100388398 . + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0826"; model_cov "5328"; model_pct "69.1"; chr10 rmsk exon 100380920 100381305 2784 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 100381306 100381754 1921 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr10 rmsk exon 100381824 100382471 3711 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "1428"; repFamily "ERV1"; repLeft "-6285"; repStart "793"; chr10 rmsk exon 100383554 100385005 9193 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1416"; chr10 rmsk exon 100385006 100385407 4164 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "3759"; repFamily "ERV1"; repLeft "-3954"; repStart "3357"; chr10 rmsk exon 100385696 100386926 6531 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "6345"; repFamily "ERV1"; repLeft "-1368"; repStart "4749"; chr10 rmsk exon 100386922 100387141 1382 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "5965"; repFamily "ERV1"; repLeft "-1748"; repStart "5747"; chr10 rmsk exon 100387436 100387488 1382 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5966"; chr10 rmsk exon 100387482 100388042 3726 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "-1"; repStart "7157"; chr10 rmsk exon 100388044 100388398 2386 + . gene_id "HERVH_10q24.31a"; transcript_id "HERVH_10q24.31a"; locus "HERVH_10q24.31a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0826"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_10q24.31 ### chr10 rmsk gene 101148059 101151766 . - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0292"; model_cov "1492"; model_pct "25.9"; chr10 rmsk exon 101148059 101148262 1006 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "5677"; repFamily "ERVL"; repLeft "5466"; repStart "-80"; chr10 rmsk exon 101148561 101149117 1155 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "5465"; repFamily "ERVL"; repLeft "4922"; repStart "-292"; chr10 rmsk exon 101149855 101150055 578 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "4346"; repFamily "ERVL"; repLeft "4059"; repStart "-1411"; chr10 rmsk exon 101150336 101150440 578 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "4045"; repFamily "ERVL"; repLeft "3947"; repStart "-1712"; chr10 rmsk exon 101150464 101150633 415 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "1435"; repFamily "ERVL"; repLeft "1261"; repStart "-4322"; chr10 rmsk exon 101151593 101151766 269 - . gene_id "ERVL_10q24.31"; transcript_id "ERVL_10q24.31"; locus "ERVL_10q24.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0292"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "370"; repStart "-5208"; ### HERVH_10q24.31b ### chr10 rmsk gene 101183756 101188921 . - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0827"; model_cov "5309"; model_pct "68.8"; chr10 rmsk exon 101183756 101184274 3201 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 101184276 101184838 3214 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7157"; repStart "-1"; chr10 rmsk exon 101184832 101186930 13823 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "2947"; repStart "-1697"; chr10 rmsk exon 101186917 101187109 1215 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3800"; repStart "-3720"; chr10 rmsk exon 101187098 101188408 9148 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "2292"; repStart "-4126"; chr10 rmsk exon 101188717 101188921 9148 - . gene_id "HERVH_10q24.31b"; transcript_id "HERVH_10q24.31b"; locus "HERVH_10q24.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0827"; repClass "LTR"; repEnd "2291"; repFamily "ERV1"; repLeft "2094"; repStart "-5422"; ### MER4_10q24.32 ### chr10 rmsk gene 102180852 102181932 . - . gene_id "MER4_10q24.32"; transcript_id "MER4_10q24.32"; locus "MER4_10q24.32"; category "internal"; intModel "MER4-int"; locid "MER4-int_0506"; model_cov "789"; model_pct "12.0"; chr10 rmsk exon 102180852 102181351 4663 - . gene_id "MER4_10q24.32"; transcript_id "MER4_10q24.32"; locus "MER4_10q24.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0506"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "6092"; repStart "-1"; chr10 rmsk exon 102181661 102181932 4663 - . gene_id "MER4_10q24.32"; transcript_id "MER4_10q24.32"; locus "MER4_10q24.32"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0506"; repClass "LTR"; repEnd "6091"; repFamily "ERV1"; repLeft "5807"; repStart "-507"; ### HERVP71A_10q24.32 ### chr10 rmsk gene 102193133 102204851 . - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0051"; model_cov "7228"; model_pct "95.2"; chr10 rmsk exon 102193133 102193586 3512 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 102193595 102193771 10077 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "7582"; repFamily "ERV1"; repLeft "7413"; repStart "-8"; chr10 rmsk exon 102194054 102194180 10077 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "7412"; repFamily "ERV1"; repLeft "7301"; repStart "-178"; chr10 rmsk exon 102194814 102195871 10077 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "7300"; repFamily "ERV1"; repLeft "6228"; repStart "-290"; chr10 rmsk exon 102196238 102197447 25283 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "6253"; repFamily "ERV1"; repLeft "5049"; repStart "-1337"; chr10 rmsk exon 102197748 102198553 25283 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "5048"; repFamily "ERV1"; repLeft "4235"; repStart "-2542"; chr10 rmsk exon 102198877 102199775 25283 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "4234"; repFamily "ERV1"; repLeft "3356"; repStart "-3356"; chr10 rmsk exon 102201426 102201989 25283 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "3355"; repFamily "ERV1"; repLeft "2788"; repStart "-4235"; chr10 rmsk exon 102201981 102204396 18242 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "2415"; repFamily "ERV1"; repLeft "1"; repStart "-5175"; chr10 rmsk exon 102204397 102204851 3204 - . gene_id "HERVP71A_10q24.32"; transcript_id "HERVP71A_10q24.32"; locus "HERVP71A_10q24.32"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0051"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11_10q24.32 ### chr10 rmsk gene 102838109 102845149 . - . gene_id "HERVK11_10q24.32"; transcript_id "HERVK11_10q24.32"; locus "HERVK11_10q24.32"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0065"; model_cov "4799"; model_pct "60.3"; chr10 rmsk exon 102838109 102839243 6582 - . gene_id "HERVK11_10q24.32"; transcript_id "HERVK11_10q24.32"; locus "HERVK11_10q24.32"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0065"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 102839244 102841690 20103 - . gene_id "HERVK11_10q24.32"; transcript_id "HERVK11_10q24.32"; locus "HERVK11_10q24.32"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0065"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "5488"; repStart "0"; chr10 rmsk exon 102841687 102844059 18169 - . gene_id "HERVK11_10q24.32"; transcript_id "HERVK11_10q24.32"; locus "HERVK11_10q24.32"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0065"; repClass "LTR"; repEnd "2335"; repFamily "ERVK"; repLeft "1"; repStart "-5618"; chr10 rmsk exon 102844065 102845149 3898 - . gene_id "HERVK11_10q24.32"; transcript_id "HERVK11_10q24.32"; locus "HERVK11_10q24.32"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0065"; repClass "LTR"; repEnd "1262"; repFamily "ERVK"; repLeft "31"; repStart "-4"; ### MER4B_10q24.32 ### chr10 rmsk gene 102891360 102895059 . + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0294"; model_cov "1407"; model_pct "20.8"; chr10 rmsk exon 102891360 102891666 6098 + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0294"; repClass "LTR"; repEnd "5618"; repFamily "ERV1"; repLeft "-1140"; repStart "5325"; chr10 rmsk exon 102891979 102892687 6098 + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0294"; repClass "LTR"; repEnd "6330"; repFamily "ERV1"; repLeft "-428"; repStart "5619"; chr10 rmsk exon 102893091 102893313 1417 + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0294"; repClass "LTR"; repEnd "6582"; repFamily "ERV1"; repLeft "-176"; repStart "6365"; chr10 rmsk exon 102893934 102894143 1140 + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0294"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6572"; chr10 rmsk exon 102894456 102895059 3315 + . gene_id "MER4B_10q24.32"; transcript_id "MER4B_10q24.32"; locus "MER4B_10q24.32"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0294"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "10"; ### HERVH_10q24.33a ### chr10 rmsk gene 103205441 103213657 . + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0828"; model_cov "6693"; model_pct "86.8"; chr10 rmsk exon 103205441 103205872 2524 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 103205875 103208326 15226 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "2337"; repFamily "ERV1"; repLeft "-5376"; repStart "1"; chr10 rmsk exon 103208637 103211398 15226 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "5017"; repFamily "ERV1"; repLeft "-2696"; repStart "2211"; chr10 rmsk exon 103211679 103212679 13459 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "6013"; repFamily "ERV1"; repLeft "-1700"; repStart "5018"; chr10 rmsk exon 103212676 103213230 3866 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr10 rmsk exon 103213231 103213657 2382 + . gene_id "HERVH_10q24.33a"; transcript_id "HERVH_10q24.33a"; locus "HERVH_10q24.33a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0828"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "-7"; repStart "23"; ### HERVH_10q24.33b ### chr10 rmsk gene 103520207 103522264 . - . gene_id "HERVH_10q24.33b"; transcript_id "HERVH_10q24.33b"; locus "HERVH_10q24.33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0829"; model_cov "1166"; model_pct "15.1"; chr10 rmsk exon 103520207 103520641 2373 - . gene_id "HERVH_10q24.33b"; transcript_id "HERVH_10q24.33b"; locus "HERVH_10q24.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0829"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr10 rmsk exon 103520642 103521073 2885 - . gene_id "HERVH_10q24.33b"; transcript_id "HERVH_10q24.33b"; locus "HERVH_10q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0829"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr10 rmsk exon 103521078 103521813 5242 - . gene_id "HERVH_10q24.33b"; transcript_id "HERVH_10q24.33b"; locus "HERVH_10q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0829"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4284"; repStart "-2693"; chr10 rmsk exon 103521834 103522264 2254 - . gene_id "HERVH_10q24.33b"; transcript_id "HERVH_10q24.33b"; locus "HERVH_10q24.33b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0829"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER41_10q24.33 ### chr10 rmsk gene 103526942 103530067 . - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0350"; model_cov "1293"; model_pct "21.7"; chr10 rmsk exon 103526942 103527280 2841 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0350"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "170"; repStart "-88"; chr10 rmsk exon 103527595 103527767 2841 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0350"; repClass "LTR"; repEnd "169"; repFamily "ERV1"; repLeft "1"; repStart "-465"; chr10 rmsk exon 103527770 103527937 2086 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0350"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "5782"; repStart "-3"; chr10 rmsk exon 103528565 103528760 2086 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0350"; repClass "LTR"; repEnd "5781"; repFamily "ERV1"; repLeft "5589"; repStart "-165"; chr10 rmsk exon 103528861 103529783 5511 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0350"; repClass "LTR"; repEnd "5579"; repFamily "ERV1"; repLeft "4639"; repStart "-367"; chr10 rmsk exon 103529866 103530067 1055 - . gene_id "MER41_10q24.33"; transcript_id "MER41_10q24.33"; locus "MER41_10q24.33"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0350"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "432"; repStart "0"; ### HERVP71A_10q25.1 ### chr10 rmsk gene 104065881 104070395 . + . gene_id "HERVP71A_10q25.1"; transcript_id "HERVP71A_10q25.1"; locus "HERVP71A_10q25.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0052"; model_cov "3575"; model_pct "47.1"; chr10 rmsk exon 104065881 104066260 2932 + . gene_id "HERVP71A_10q25.1"; transcript_id "HERVP71A_10q25.1"; locus "HERVP71A_10q25.1"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0052"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "-228"; repStart "1"; chr10 rmsk exon 104066261 104067516 7563 + . gene_id "HERVP71A_10q25.1"; transcript_id "HERVP71A_10q25.1"; locus "HERVP71A_10q25.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0052"; repClass "LTR"; repEnd "1756"; repFamily "ERV1"; repLeft "-5834"; repStart "498"; chr10 rmsk exon 104068034 104070321 13336 + . gene_id "HERVP71A_10q25.1"; transcript_id "HERVP71A_10q25.1"; locus "HERVP71A_10q25.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0052"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "-1719"; repStart "3554"; chr10 rmsk exon 104070322 104070395 592 + . gene_id "HERVP71A_10q25.1"; transcript_id "HERVP71A_10q25.1"; locus "HERVP71A_10q25.1"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0052"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "537"; ### LTR19_10q25.1 ### chr10 rmsk gene 104233864 104236373 . + . gene_id "LTR19_10q25.1"; transcript_id "LTR19_10q25.1"; locus "LTR19_10q25.1"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0034"; model_cov "3473"; model_pct "62.2"; chr10 rmsk exon 104233864 104236373 9916 + . gene_id "LTR19_10q25.1"; transcript_id "LTR19_10q25.1"; locus "LTR19_10q25.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0034"; repClass "LTR"; repEnd "5584"; repFamily "ERV1"; repLeft "-2"; repStart "2111"; ### HERVL_10q25.1a ### chr10 rmsk gene 104462191 104468144 . + . gene_id "HERVL_10q25.1a"; transcript_id "HERVL_10q25.1a"; locus "HERVL_10q25.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0874"; model_cov "5536"; model_pct "97.9"; chr10 rmsk exon 104462191 104462633 3366 + . gene_id "HERVL_10q25.1a"; transcript_id "HERVL_10q25.1a"; locus "HERVL_10q25.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0874"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 104462634 104468144 44976 + . gene_id "HERVL_10q25.1a"; transcript_id "HERVL_10q25.1a"; locus "HERVL_10q25.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0874"; repClass "LTR"; repEnd "5537"; repFamily "ERVL"; repLeft "-117"; repStart "1"; ### MER61_10q25.1 ### chr10 rmsk gene 104608119 104613187 . + . gene_id "MER61_10q25.1"; transcript_id "MER61_10q25.1"; locus "MER61_10q25.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0254"; model_cov "4350"; model_pct "83.4"; chr10 rmsk exon 104608119 104608441 1923 + . gene_id "MER61_10q25.1"; transcript_id "MER61_10q25.1"; locus "MER61_10q25.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0254"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 104608442 104609121 2409 + . gene_id "MER61_10q25.1"; transcript_id "MER61_10q25.1"; locus "MER61_10q25.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0254"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "-4434"; repStart "1"; chr10 rmsk exon 104609111 104612862 24159 + . gene_id "MER61_10q25.1"; transcript_id "MER61_10q25.1"; locus "MER61_10q25.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0254"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1649"; chr10 rmsk exon 104612863 104613187 1926 + . gene_id "MER61_10q25.1"; transcript_id "MER61_10q25.1"; locus "MER61_10q25.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0254"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_10q25.1a ### chr10 rmsk gene 104831935 104833620 . - . gene_id "ERVLE_10q25.1a"; transcript_id "ERVLE_10q25.1a"; locus "ERVLE_10q25.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2441"; model_cov "1439"; model_pct "25.4"; chr10 rmsk exon 104831935 104832435 2809 - . gene_id "ERVLE_10q25.1a"; transcript_id "ERVLE_10q25.1a"; locus "ERVLE_10q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2441"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "4833"; repStart "-352"; chr10 rmsk exon 104832751 104833620 2809 - . gene_id "ERVLE_10q25.1a"; transcript_id "ERVLE_10q25.1a"; locus "ERVLE_10q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2441"; repClass "LTR"; repEnd "4832"; repFamily "ERVL"; repLeft "3875"; repStart "-835"; ### HERVL_10q25.1b ### chr10 rmsk gene 105421731 105427856 . - . gene_id "HERVL_10q25.1b"; transcript_id "HERVL_10q25.1b"; locus "HERVL_10q25.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0876"; model_cov "5728"; model_pct "100.0"; chr10 rmsk exon 105421731 105422114 2851 - . gene_id "HERVL_10q25.1b"; transcript_id "HERVL_10q25.1b"; locus "HERVL_10q25.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0876"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "3"; repStart "-50"; chr10 rmsk exon 105422117 105426397 20838 - . gene_id "HERVL_10q25.1b"; transcript_id "HERVL_10q25.1b"; locus "HERVL_10q25.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0876"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1120"; repStart "0"; chr10 rmsk exon 105426395 105427021 9280 - . gene_id "HERVL_10q25.1b"; transcript_id "HERVL_10q25.1b"; locus "HERVL_10q25.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0876"; repClass "LTR"; repEnd "1197"; repFamily "ERVL"; repLeft "570"; repStart "-4457"; chr10 rmsk exon 105427290 105427856 9280 - . gene_id "HERVL_10q25.1b"; transcript_id "HERVL_10q25.1b"; locus "HERVL_10q25.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0876"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "2"; repStart "-5085"; ### ERV316A3_10q25.1a ### chr10 rmsk gene 105445484 105452638 . - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1865"; model_cov "2674"; model_pct "51.2"; chr10 rmsk exon 105445484 105446228 1516 - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1865"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "4363"; repStart "-109"; chr10 rmsk exon 105446578 105446751 744 - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1865"; repClass "LTR"; repEnd "3997"; repFamily "ERVL"; repLeft "3817"; repStart "-1229"; chr10 rmsk exon 105448743 105450210 3167 - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1865"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "2363"; repStart "-1396"; chr10 rmsk exon 105450188 105450312 259 - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1865"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "2560"; repStart "-2539"; chr10 rmsk exon 105452494 105452638 350 - . gene_id "ERV316A3_10q25.1a"; transcript_id "ERV316A3_10q25.1a"; locus "ERV316A3_10q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1865"; repClass "LTR"; repEnd "1813"; repFamily "ERVL"; repLeft "1667"; repStart "-3413"; ### ERV316A3_10q25.1b ### chr10 rmsk gene 105453090 105453940 . - . gene_id "ERV316A3_10q25.1b"; transcript_id "ERV316A3_10q25.1b"; locus "ERV316A3_10q25.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1866"; model_cov "854"; model_pct "16.3"; chr10 rmsk exon 105453090 105453940 1593 - . gene_id "ERV316A3_10q25.1b"; transcript_id "ERV316A3_10q25.1b"; locus "ERV316A3_10q25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1866"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "1135"; repStart "-3237"; ### HERVH_10q25.1a ### chr10 rmsk gene 105727637 105733785 . + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0830"; model_cov "5818"; model_pct "75.4"; chr10 rmsk exon 105727637 105728004 2049 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 105728005 105730616 12232 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr10 rmsk exon 105730617 105732451 6856 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4416"; chr10 rmsk exon 105732443 105732865 2132 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr10 rmsk exon 105732859 105733418 3428 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr10 rmsk exon 105733419 105733785 1997 + . gene_id "HERVH_10q25.1a"; transcript_id "HERVH_10q25.1a"; locus "HERVH_10q25.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0830"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_10q25.1c ### chr10 rmsk gene 105741925 105742616 . - . gene_id "ERV316A3_10q25.1c"; transcript_id "ERV316A3_10q25.1c"; locus "ERV316A3_10q25.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1868"; model_cov "711"; model_pct "13.6"; chr10 rmsk exon 105741925 105742616 1361 - . gene_id "ERV316A3_10q25.1c"; transcript_id "ERV316A3_10q25.1c"; locus "ERV316A3_10q25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1868"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "3657"; repStart "-858"; ### ERVL_10q25.1 ### chr10 rmsk gene 105752866 105753998 . - . gene_id "ERVL_10q25.1"; transcript_id "ERVL_10q25.1"; locus "ERVL_10q25.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0293"; model_cov "767"; model_pct "13.3"; chr10 rmsk exon 105752866 105753008 268 - . gene_id "ERVL_10q25.1"; transcript_id "ERVL_10q25.1"; locus "ERVL_10q25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0293"; repClass "LTR"; repEnd "5434"; repFamily "ERVL"; repLeft "5278"; repStart "-323"; chr10 rmsk exon 105753020 105753305 523 - . gene_id "ERVL_10q25.1"; transcript_id "ERVL_10q25.1"; locus "ERVL_10q25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0293"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "4922"; repStart "-540"; chr10 rmsk exon 105753518 105753649 567 - . gene_id "ERVL_10q25.1"; transcript_id "ERVL_10q25.1"; locus "ERVL_10q25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0293"; repClass "LTR"; repEnd "4549"; repFamily "ERVL"; repLeft "4419"; repStart "-1208"; chr10 rmsk exon 105753820 105753998 567 - . gene_id "ERVL_10q25.1"; transcript_id "ERVL_10q25.1"; locus "ERVL_10q25.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0293"; repClass "LTR"; repEnd "4418"; repFamily "ERVL"; repLeft "4232"; repStart "-1339"; ### ERV316A3_10q25.1d ### chr10 rmsk gene 105956153 105960928 . - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1869"; model_cov "3647"; model_pct "69.8"; chr10 rmsk exon 105956153 105956501 741 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "37"; repStart "0"; chr10 rmsk exon 105956530 105956867 705 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4885"; repStart "0"; chr10 rmsk exon 105956945 105958786 3643 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "4863"; repFamily "ERVL"; repLeft "3014"; repStart "-363"; chr10 rmsk exon 105959143 105959343 3643 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "2793"; repStart "-2213"; chr10 rmsk exon 105959342 105959418 965 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "1775"; repFamily "ERVL"; repLeft "1693"; repStart "-3451"; chr10 rmsk exon 105959839 105960928 1720 - . gene_id "ERV316A3_10q25.1d"; transcript_id "ERV316A3_10q25.1d"; locus "ERV316A3_10q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1869"; repClass "LTR"; repEnd "1692"; repFamily "ERVL"; repLeft "537"; repStart "-3534"; ### HERVH_10q25.1b ### chr10 rmsk gene 106016740 106023098 . - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0831"; model_cov "5770"; model_pct "74.8"; chr10 rmsk exon 106016740 106017189 3454 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr10 rmsk exon 106017196 106019143 14127 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "5769"; repStart "-6"; chr10 rmsk exon 106019130 106019319 1290 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr10 rmsk exon 106019322 106019824 3320 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr10 rmsk exon 106019815 106019961 980 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr10 rmsk exon 106019948 106022643 14084 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "3"; repStart "-4721"; chr10 rmsk exon 106022648 106023098 3455 - . gene_id "HERVH_10q25.1b"; transcript_id "HERVH_10q25.1b"; locus "HERVH_10q25.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0831"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_10q25.1b ### chr10 rmsk gene 106105086 106107561 . + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2444"; model_cov "1186"; model_pct "20.9"; chr10 rmsk exon 106105086 106105191 422 + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2444"; repClass "LTR"; repEnd "2185"; repFamily "ERVL"; repLeft "-3482"; repStart "2075"; chr10 rmsk exon 106105425 106105664 425 + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2444"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "-2249"; repStart "3177"; chr10 rmsk exon 106105669 106105823 277 + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2444"; repClass "LTR"; repEnd "3827"; repFamily "ERVL"; repLeft "-1840"; repStart "3676"; chr10 rmsk exon 106106344 106106655 691 + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2444"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "-1265"; repStart "4078"; chr10 rmsk exon 106107197 106107561 691 + . gene_id "ERVLE_10q25.1b"; transcript_id "ERVLE_10q25.1b"; locus "ERVLE_10q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2444"; repClass "LTR"; repEnd "4763"; repFamily "ERVL"; repLeft "-904"; repStart "4403"; ### ERV316A3_10q25.1e ### chr10 rmsk gene 106209125 106211349 . - . gene_id "ERV316A3_10q25.1e"; transcript_id "ERV316A3_10q25.1e"; locus "ERV316A3_10q25.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1870"; model_cov "995"; model_pct "19.0"; chr10 rmsk exon 106209125 106209267 429 - . gene_id "ERV316A3_10q25.1e"; transcript_id "ERV316A3_10q25.1e"; locus "ERV316A3_10q25.1e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1870"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "427"; repStart "0"; chr10 rmsk exon 106209599 106210582 1233 - . gene_id "ERV316A3_10q25.1e"; transcript_id "ERV316A3_10q25.1e"; locus "ERV316A3_10q25.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1870"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "4039"; repStart "-192"; chr10 rmsk exon 106210991 106211108 246 - . gene_id "ERV316A3_10q25.1e"; transcript_id "ERV316A3_10q25.1e"; locus "ERV316A3_10q25.1e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1870"; repClass "LTR"; repEnd "567"; repFamily "ERVL"; repLeft "447"; repStart "-1"; chr10 rmsk exon 106211158 106211349 531 - . gene_id "ERV316A3_10q25.1e"; transcript_id "ERV316A3_10q25.1e"; locus "ERV316A3_10q25.1e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1870"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "1"; repStart "-379"; ### MER4_10q25.1a ### chr10 rmsk gene 106375402 106379554 . + . gene_id "MER4_10q25.1a"; transcript_id "MER4_10q25.1a"; locus "MER4_10q25.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0507"; model_cov "5520"; model_pct "83.7"; chr10 rmsk exon 106375402 106375553 504 + . gene_id "MER4_10q25.1a"; transcript_id "MER4_10q25.1a"; locus "MER4_10q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0507"; repClass "LTR"; repEnd "2332"; repFamily "ERV1"; repLeft "-4266"; repStart "2210"; chr10 rmsk exon 106375552 106376240 4204 + . gene_id "MER4_10q25.1a"; transcript_id "MER4_10q25.1a"; locus "MER4_10q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0507"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1771"; chr10 rmsk exon 106376485 106379554 14750 + . gene_id "MER4_10q25.1a"; transcript_id "MER4_10q25.1a"; locus "MER4_10q25.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0507"; repClass "LTR"; repEnd "6536"; repFamily "ERV1"; repLeft "-62"; repStart "1862"; ### ERVLE_10q25.1c ### chr10 rmsk gene 107195348 107199051 . + . gene_id "ERVLE_10q25.1c"; transcript_id "ERVLE_10q25.1c"; locus "ERVLE_10q25.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2445"; model_cov "2604"; model_pct "46.0"; chr10 rmsk exon 107195348 107195935 1195 + . gene_id "ERVLE_10q25.1c"; transcript_id "ERVLE_10q25.1c"; locus "ERVLE_10q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2445"; repClass "LTR"; repEnd "929"; repFamily "ERVL"; repLeft "-4738"; repStart "345"; chr10 rmsk exon 107196665 107197601 3420 + . gene_id "ERVLE_10q25.1c"; transcript_id "ERVLE_10q25.1c"; locus "ERVLE_10q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2445"; repClass "LTR"; repEnd "1896"; repFamily "ERVL"; repLeft "-3771"; repStart "958"; chr10 rmsk exon 107197986 107199051 3420 + . gene_id "ERVLE_10q25.1c"; transcript_id "ERVLE_10q25.1c"; locus "ERVLE_10q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2445"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "-2688"; repStart "1897"; ### ERV316A3_10q25.1f ### chr10 rmsk gene 107232848 107238059 . + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1871"; model_cov "3647"; model_pct "69.8"; chr10 rmsk exon 107232848 107233274 1254 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "1"; chr10 rmsk exon 107233289 107233573 2093 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "-4705"; repStart "231"; chr10 rmsk exon 107233886 107234303 2093 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "942"; repFamily "ERVL"; repLeft "-4284"; repStart "522"; chr10 rmsk exon 107234662 107235180 2093 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "1569"; repFamily "ERVL"; repLeft "-3657"; repStart "943"; chr10 rmsk exon 107235148 107236074 2016 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "3383"; repFamily "ERVL"; repLeft "-1843"; repStart "2466"; chr10 rmsk exon 107236126 107237347 2649 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "-183"; repStart "3825"; chr10 rmsk exon 107237479 107237660 2649 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "-6"; repStart "5044"; chr10 rmsk exon 107237671 107238059 893 + . gene_id "ERV316A3_10q25.1f"; transcript_id "ERV316A3_10q25.1f"; locus "ERV316A3_10q25.1f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1871"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-17"; repStart "-8"; ### ERV316A3_10q25.1g ### chr10 rmsk gene 107358158 107363824 . + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1873"; model_cov "3367"; model_pct "64.4"; chr10 rmsk exon 107358158 107358649 760 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr10 rmsk exon 107358977 107359565 883 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "885"; repFamily "ERVL"; repLeft "-4341"; repStart "267"; chr10 rmsk exon 107359816 107360606 976 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "2020"; repFamily "ERVL"; repLeft "-3206"; repStart "1212"; chr10 rmsk exon 107361339 107361768 793 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "2312"; repFamily "ERVL"; repLeft "-2914"; repStart "1845"; chr10 rmsk exon 107361817 107362144 793 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "2646"; repFamily "ERVL"; repLeft "-2580"; repStart "2313"; chr10 rmsk exon 107362329 107362818 1623 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "3151"; repFamily "ERVL"; repLeft "-2075"; repStart "2680"; chr10 rmsk exon 107363181 107363824 1623 + . gene_id "ERV316A3_10q25.1g"; transcript_id "ERV316A3_10q25.1g"; locus "ERV316A3_10q25.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1873"; repClass "LTR"; repEnd "3822"; repFamily "ERVL"; repLeft "-1404"; repStart "3152"; ### ERVLB4_10q25.1a ### chr10 rmsk gene 107363902 107367520 . + . gene_id "ERVLB4_10q25.1a"; transcript_id "ERVLB4_10q25.1a"; locus "ERVLB4_10q25.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1147"; model_cov "1202"; model_pct "21.0"; chr10 rmsk exon 107363902 107364063 415 + . gene_id "ERVLB4_10q25.1a"; transcript_id "ERVLB4_10q25.1a"; locus "ERVLB4_10q25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1147"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "-4257"; repStart "1295"; chr10 rmsk exon 107364516 107364804 415 + . gene_id "ERVLB4_10q25.1a"; transcript_id "ERVLB4_10q25.1a"; locus "ERVLB4_10q25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1147"; repClass "LTR"; repEnd "1749"; repFamily "ERVL"; repLeft "-3965"; repStart "1458"; chr10 rmsk exon 107366811 107367520 1720 + . gene_id "ERVLB4_10q25.1a"; transcript_id "ERVLB4_10q25.1a"; locus "ERVLB4_10q25.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1147"; repClass "LTR"; repEnd "2645"; repFamily "ERVL"; repLeft "-3069"; repStart "1896"; ### ERVLB4_10q25.1b ### chr10 rmsk gene 107375174 107381044 . - . gene_id "ERVLB4_10q25.1b"; transcript_id "ERVLB4_10q25.1b"; locus "ERVLB4_10q25.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1148"; model_cov "5033"; model_pct "88.1"; chr10 rmsk exon 107375174 107375622 2002 - . gene_id "ERVLB4_10q25.1b"; transcript_id "ERVLB4_10q25.1b"; locus "ERVLB4_10q25.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1148"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 107375623 107380550 27979 - . gene_id "ERVLB4_10q25.1b"; transcript_id "ERVLB4_10q25.1b"; locus "ERVLB4_10q25.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1148"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "681"; repStart "0"; chr10 rmsk exon 107380657 107381044 1756 - . gene_id "ERVLB4_10q25.1b"; transcript_id "ERVLB4_10q25.1b"; locus "ERVLB4_10q25.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1148"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-41"; repStart "-72"; ### ERV316A3_10q25.1h ### chr10 rmsk gene 107641290 107646018 . - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1875"; model_cov "4123"; model_pct "78.9"; chr10 rmsk exon 107641290 107641450 384 - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1875"; repClass "LTR"; repEnd "4431"; repFamily "ERVL"; repLeft "4201"; repStart "-795"; chr10 rmsk exon 107641451 107642424 2246 - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1875"; repClass "LTR"; repEnd "4232"; repFamily "ERVL"; repLeft "3177"; repStart "-994"; chr10 rmsk exon 107642605 107643383 2019 - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1875"; repClass "LTR"; repEnd "3317"; repFamily "ERVL"; repLeft "2527"; repStart "-1909"; chr10 rmsk exon 107643536 107645606 2311 - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1875"; repClass "LTR"; repEnd "2061"; repFamily "ERVL"; repLeft "13"; repStart "-3165"; chr10 rmsk exon 107645630 107646018 972 - . gene_id "ERV316A3_10q25.1h"; transcript_id "ERV316A3_10q25.1h"; locus "ERV316A3_10q25.1h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1875"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "14"; repStart "-2"; ### HERVL_10q25.1c ### chr10 rmsk gene 107660467 107664583 . + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0877"; model_cov "2806"; model_pct "49.6"; chr10 rmsk exon 107660467 107660844 2933 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "1"; chr10 rmsk exon 107660882 107660926 2933 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "393"; chr10 rmsk exon 107660927 107663340 17993 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "-3273"; repStart "1"; chr10 rmsk exon 107663334 107663755 3206 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5228"; chr10 rmsk exon 107663756 107663904 3052 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "154"; repFamily "ERVL"; repLeft "-290"; repStart "1"; chr10 rmsk exon 107664280 107664583 3052 + . gene_id "HERVL_10q25.1c"; transcript_id "HERVL_10q25.1c"; locus "HERVL_10q25.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0877"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "155"; ### MER34B_10q25.1 ### chr10 rmsk gene 107873192 107876026 . + . gene_id "MER34B_10q25.1"; transcript_id "MER34B_10q25.1"; locus "MER34B_10q25.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0193"; model_cov "2398"; model_pct "44.8"; chr10 rmsk exon 107873192 107873419 755 + . gene_id "MER34B_10q25.1"; transcript_id "MER34B_10q25.1"; locus "MER34B_10q25.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0193"; repClass "LTR"; repEnd "659"; repFamily "ERV1"; repLeft "-4697"; repStart "426"; chr10 rmsk exon 107874116 107874164 316 + . gene_id "MER34B_10q25.1"; transcript_id "MER34B_10q25.1"; locus "MER34B_10q25.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0193"; repClass "LTR"; repEnd "1334"; repFamily "ERV1"; repLeft "-4022"; repStart "1286"; chr10 rmsk exon 107874169 107874325 352 + . gene_id "MER34B_10q25.1"; transcript_id "MER34B_10q25.1"; locus "MER34B_10q25.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0193"; repClass "LTR"; repEnd "1621"; repFamily "ERV1"; repLeft "-3735"; repStart "1463"; chr10 rmsk exon 107874360 107876026 2292 + . gene_id "MER34B_10q25.1"; transcript_id "MER34B_10q25.1"; locus "MER34B_10q25.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0193"; repClass "LTR"; repEnd "3289"; repFamily "ERV1"; repLeft "-2067"; repStart "1330"; ### ERVLE_10q25.1d ### chr10 rmsk gene 108104715 108107247 . + . gene_id "ERVLE_10q25.1d"; transcript_id "ERVLE_10q25.1d"; locus "ERVLE_10q25.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2449"; model_cov "2387"; model_pct "42.1"; chr10 rmsk exon 108104715 108105817 1588 + . gene_id "ERVLE_10q25.1d"; transcript_id "ERVLE_10q25.1d"; locus "ERVLE_10q25.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2449"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4518"; repStart "3"; chr10 rmsk exon 108106034 108107247 3668 + . gene_id "ERVLE_10q25.1d"; transcript_id "ERVLE_10q25.1d"; locus "ERVLE_10q25.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2449"; repClass "LTR"; repEnd "5166"; repFamily "ERVL"; repLeft "-501"; repStart "3925"; ### ERV316A3_10q25.1i ### chr10 rmsk gene 108136396 108137531 . - . gene_id "ERV316A3_10q25.1i"; transcript_id "ERV316A3_10q25.1i"; locus "ERV316A3_10q25.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1876"; model_cov "693"; model_pct "13.3"; chr10 rmsk exon 108136396 108137090 833 - . gene_id "ERV316A3_10q25.1i"; transcript_id "ERV316A3_10q25.1i"; locus "ERV316A3_10q25.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1876"; repClass "LTR"; repEnd "710"; repFamily "ERVL"; repLeft "17"; repStart "-4516"; chr10 rmsk exon 108137160 108137531 708 - . gene_id "ERV316A3_10q25.1i"; transcript_id "ERV316A3_10q25.1i"; locus "ERV316A3_10q25.1i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1876"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "57"; repStart "-21"; ### ERV316A3_10q25.1j ### chr10 rmsk gene 108231264 108234185 . - . gene_id "ERV316A3_10q25.1j"; transcript_id "ERV316A3_10q25.1j"; locus "ERV316A3_10q25.1j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1877"; model_cov "2834"; model_pct "54.2"; chr10 rmsk exon 108231264 108232635 2747 - . gene_id "ERV316A3_10q25.1j"; transcript_id "ERV316A3_10q25.1j"; locus "ERV316A3_10q25.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1877"; repClass "LTR"; repEnd "3419"; repFamily "ERVL"; repLeft "2001"; repStart "-1807"; chr10 rmsk exon 108232775 108234185 1832 - . gene_id "ERV316A3_10q25.1j"; transcript_id "ERV316A3_10q25.1j"; locus "ERV316A3_10q25.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1877"; repClass "LTR"; repEnd "1700"; repFamily "ERVL"; repLeft "284"; repStart "-3526"; ### MER41_10q25.1 ### chr10 rmsk gene 108244290 108250025 . + . gene_id "MER41_10q25.1"; transcript_id "MER41_10q25.1"; locus "MER41_10q25.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0351"; model_cov "3631"; model_pct "61.1"; chr10 rmsk exon 108244290 108244394 300 + . gene_id "MER41_10q25.1"; transcript_id "MER41_10q25.1"; locus "MER41_10q25.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0351"; repClass "LTR"; repEnd "-968"; repFamily "ERV1"; repLeft "-6914"; repStart "-1129"; chr10 rmsk exon 108244707 108244856 251 + . gene_id "MER41_10q25.1"; transcript_id "MER41_10q25.1"; locus "MER41_10q25.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0351"; repClass "LTR"; repEnd "-653"; repFamily "ERV1"; repLeft "-6599"; repStart "-809"; chr10 rmsk exon 108245178 108250025 14380 + . gene_id "MER41_10q25.1"; transcript_id "MER41_10q25.1"; locus "MER41_10q25.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0351"; repClass "LTR"; repEnd "5484"; repFamily "ERV1"; repLeft "-462"; repStart "2170"; ### ERVLE_10q25.1e ### chr10 rmsk gene 108401882 108403768 . + . gene_id "ERVLE_10q25.1e"; transcript_id "ERVLE_10q25.1e"; locus "ERVLE_10q25.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2450"; model_cov "961"; model_pct "17.0"; chr10 rmsk exon 108401882 108402539 743 + . gene_id "ERVLE_10q25.1e"; transcript_id "ERVLE_10q25.1e"; locus "ERVLE_10q25.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2450"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 108402544 108403442 2644 + . gene_id "ERVLE_10q25.1e"; transcript_id "ERVLE_10q25.1e"; locus "ERVLE_10q25.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2450"; repClass "LTR"; repEnd "898"; repFamily "ERVL"; repLeft "-4769"; repStart "5"; chr10 rmsk exon 108403703 108403768 2644 + . gene_id "ERVLE_10q25.1e"; transcript_id "ERVLE_10q25.1e"; locus "ERVLE_10q25.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2450"; repClass "LTR"; repEnd "967"; repFamily "ERVL"; repLeft "-4700"; repStart "899"; ### HERVL_10q25.1d ### chr10 rmsk gene 108429636 108433037 . - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0878"; model_cov "2467"; model_pct "43.6"; chr10 rmsk exon 108429636 108430075 2927 - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0878"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 108430076 108431523 11343 - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0878"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4217"; repStart "0"; chr10 rmsk exon 108431521 108432542 8082 - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0878"; repClass "LTR"; repEnd "4093"; repFamily "ERVL"; repLeft "3063"; repStart "-1561"; chr10 rmsk exon 108432557 108432604 2646 - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0878"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "401"; repStart "0"; chr10 rmsk exon 108432664 108433037 2646 - . gene_id "HERVL_10q25.1d"; transcript_id "HERVL_10q25.1d"; locus "HERVL_10q25.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0878"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; ### HERVH_10q25.1c ### chr10 rmsk gene 108599050 108600816 . + . gene_id "HERVH_10q25.1c"; transcript_id "HERVH_10q25.1c"; locus "HERVH_10q25.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0832"; model_cov "1081"; model_pct "14.0"; chr10 rmsk exon 108599050 108599463 2727 + . gene_id "HERVH_10q25.1c"; transcript_id "HERVH_10q25.1c"; locus "HERVH_10q25.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0832"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 108599464 108599572 722 + . gene_id "HERVH_10q25.1c"; transcript_id "HERVH_10q25.1c"; locus "HERVH_10q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0832"; repClass "LTR"; repEnd "109"; repFamily "ERV1"; repLeft "-7604"; repStart "1"; chr10 rmsk exon 108599566 108600535 6407 + . gene_id "HERVH_10q25.1c"; transcript_id "HERVH_10q25.1c"; locus "HERVH_10q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0832"; repClass "LTR"; repEnd "2325"; repFamily "ERV1"; repLeft "-5388"; repStart "1352"; chr10 rmsk exon 108600536 108600816 1621 + . gene_id "HERVH_10q25.1c"; transcript_id "HERVH_10q25.1c"; locus "HERVH_10q25.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0832"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "160"; ### ERV316A3_10q25.1k ### chr10 rmsk gene 108639130 108641909 . + . gene_id "ERV316A3_10q25.1k"; transcript_id "ERV316A3_10q25.1k"; locus "ERV316A3_10q25.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1879"; model_cov "1759"; model_pct "33.7"; chr10 rmsk exon 108639130 108639492 492 + . gene_id "ERV316A3_10q25.1k"; transcript_id "ERV316A3_10q25.1k"; locus "ERV316A3_10q25.1k"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1879"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-12"; repStart "33"; chr10 rmsk exon 108639642 108640256 1291 + . gene_id "ERV316A3_10q25.1k"; transcript_id "ERV316A3_10q25.1k"; locus "ERV316A3_10q25.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1879"; repClass "LTR"; repEnd "763"; repFamily "ERVL"; repLeft "-4463"; repStart "101"; chr10 rmsk exon 108640828 108641909 2136 + . gene_id "ERV316A3_10q25.1k"; transcript_id "ERV316A3_10q25.1k"; locus "ERV316A3_10q25.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1879"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3259"; repStart "870"; ### HML1_10q25.1 ### chr10 rmsk gene 108730536 108732597 . + . gene_id "HML1_10q25.1"; transcript_id "HML1_10q25.1"; locus "HML1_10q25.1"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0073"; model_cov "1096"; model_pct "18.0"; chr10 rmsk exon 108730536 108730714 376 + . gene_id "HML1_10q25.1"; transcript_id "HML1_10q25.1"; locus "HML1_10q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0073"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-6970"; repStart "-1065"; chr10 rmsk exon 108730776 108730867 446 + . gene_id "HML1_10q25.1"; transcript_id "HML1_10q25.1"; locus "HML1_10q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0073"; repClass "LTR"; repEnd "-467"; repFamily "ERVK"; repLeft "-6563"; repStart "-558"; chr10 rmsk exon 108730856 108732480 5341 + . gene_id "HML1_10q25.1"; transcript_id "HML1_10q25.1"; locus "HML1_10q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0073"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5124"; chr10 rmsk exon 108732556 108732597 369 + . gene_id "HML1_10q25.1"; transcript_id "HML1_10q25.1"; locus "HML1_10q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0073"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5973"; ### HUERSP3_10q25.1 ### chr10 rmsk gene 108782691 108787919 . + . gene_id "HUERSP3_10q25.1"; transcript_id "HUERSP3_10q25.1"; locus "HUERSP3_10q25.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0136"; model_cov "3908"; model_pct "43.8"; chr10 rmsk exon 108782691 108783299 4176 + . gene_id "HUERSP3_10q25.1"; transcript_id "HUERSP3_10q25.1"; locus "HUERSP3_10q25.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0136"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr10 rmsk exon 108783322 108786841 14876 + . gene_id "HUERSP3_10q25.1"; transcript_id "HUERSP3_10q25.1"; locus "HUERSP3_10q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0136"; repClass "LTR"; repEnd "3435"; repFamily "ERV1"; repLeft "-5484"; repStart "22"; chr10 rmsk exon 108786819 108787310 2992 + . gene_id "HUERSP3_10q25.1"; transcript_id "HUERSP3_10q25.1"; locus "HUERSP3_10q25.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0136"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8424"; chr10 rmsk exon 108787313 108787919 4242 + . gene_id "HUERSP3_10q25.1"; transcript_id "HUERSP3_10q25.1"; locus "HUERSP3_10q25.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0136"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HERVL74_10q25.1a ### chr10 rmsk gene 108823020 108823767 . - . gene_id "HERVL74_10q25.1a"; transcript_id "HERVL74_10q25.1a"; locus "HERVL74_10q25.1a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0065"; model_cov "770"; model_pct "13.5"; chr10 rmsk exon 108823020 108823767 2890 - . gene_id "HERVL74_10q25.1a"; transcript_id "HERVL74_10q25.1a"; locus "HERVL74_10q25.1a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0065"; repClass "LTR"; repEnd "1951"; repFamily "ERVL"; repLeft "1181"; repStart "-3734"; ### HERVL_10q25.1e ### chr10 rmsk gene 108889287 108893944 . - . gene_id "HERVL_10q25.1e"; transcript_id "HERVL_10q25.1e"; locus "HERVL_10q25.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0879"; model_cov "4160"; model_pct "73.6"; chr10 rmsk exon 108889287 108889861 2114 - . gene_id "HERVL_10q25.1e"; transcript_id "HERVL_10q25.1e"; locus "HERVL_10q25.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0879"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr10 rmsk exon 108889864 108891212 5368 - . gene_id "HERVL_10q25.1e"; transcript_id "HERVL_10q25.1e"; locus "HERVL_10q25.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0879"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "4254"; repStart "-2"; chr10 rmsk exon 108891216 108893944 19055 - . gene_id "HERVL_10q25.1e"; transcript_id "HERVL_10q25.1e"; locus "HERVL_10q25.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0879"; repClass "LTR"; repEnd "3739"; repFamily "ERVL"; repLeft "977"; repStart "-1915"; ### HERVL_10q25.1f ### chr10 rmsk gene 109311963 109314771 . - . gene_id "HERVL_10q25.1f"; transcript_id "HERVL_10q25.1f"; locus "HERVL_10q25.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0880"; model_cov "2424"; model_pct "42.9"; chr10 rmsk exon 109311963 109312423 2719 - . gene_id "HERVL_10q25.1f"; transcript_id "HERVL_10q25.1f"; locus "HERVL_10q25.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0880"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "-22"; chr10 rmsk exon 109312424 109314771 17422 - . gene_id "HERVL_10q25.1f"; transcript_id "HERVL_10q25.1f"; locus "HERVL_10q25.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0880"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3230"; repStart "0"; ### HERVL74_10q25.1b ### chr10 rmsk gene 109325732 109326543 . + . gene_id "HERVL74_10q25.1b"; transcript_id "HERVL74_10q25.1b"; locus "HERVL74_10q25.1b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0066"; model_cov "832"; model_pct "14.6"; chr10 rmsk exon 109325732 109326543 3341 + . gene_id "HERVL74_10q25.1b"; transcript_id "HERVL74_10q25.1b"; locus "HERVL74_10q25.1b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0066"; repClass "LTR"; repEnd "2083"; repFamily "ERVL"; repLeft "-3602"; repStart "1251"; ### HERVH_10q25.1d ### chr10 rmsk gene 109562758 109568252 . + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0833"; model_cov "5095"; model_pct "66.1"; chr10 rmsk exon 109562758 109562864 825 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr10 rmsk exon 109562866 109565761 14147 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr10 rmsk exon 109565756 109566601 5393 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3140"; chr10 rmsk exon 109566601 109567219 2901 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4481"; chr10 rmsk exon 109567257 109567461 1303 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr10 rmsk exon 109567462 109567835 2151 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr10 rmsk exon 109567836 109568252 2726 + . gene_id "HERVH_10q25.1d"; transcript_id "HERVH_10q25.1d"; locus "HERVH_10q25.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0833"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### MER4_10q25.1b ### chr10 rmsk gene 109632462 109637707 . + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0509"; model_cov "4881"; model_pct "74.0"; chr10 rmsk exon 109632462 109633334 5172 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0509"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1594"; chr10 rmsk exon 109633575 109634464 3375 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0509"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2737"; chr10 rmsk exon 109634464 109636055 10260 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0509"; repClass "LTR"; repEnd "5526"; repFamily "ERV1"; repLeft "-1072"; repStart "3837"; chr10 rmsk exon 109636348 109636611 10260 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0509"; repClass "LTR"; repEnd "5783"; repFamily "ERV1"; repLeft "-815"; repStart "5527"; chr10 rmsk exon 109636604 109637277 4070 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0509"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5505"; chr10 rmsk exon 109637286 109637707 3038 + . gene_id "MER4_10q25.1b"; transcript_id "MER4_10q25.1b"; locus "MER4_10q25.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0509"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-26"; repStart "1"; ### ERV316A3_10q25.2a ### chr10 rmsk gene 110632830 110633773 . - . gene_id "ERV316A3_10q25.2a"; transcript_id "ERV316A3_10q25.2a"; locus "ERV316A3_10q25.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1880"; model_cov "800"; model_pct "15.3"; chr10 rmsk exon 110632830 110633209 818 - . gene_id "ERV316A3_10q25.2a"; transcript_id "ERV316A3_10q25.2a"; locus "ERV316A3_10q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1880"; repClass "LTR"; repEnd "2874"; repFamily "ERVL"; repLeft "2393"; repStart "-2352"; chr10 rmsk exon 110633588 110633773 483 - . gene_id "ERV316A3_10q25.2a"; transcript_id "ERV316A3_10q25.2a"; locus "ERV316A3_10q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1880"; repClass "LTR"; repEnd "2429"; repFamily "ERVL"; repLeft "2110"; repStart "-2797"; ### ERVLB4_10q25.2a ### chr10 rmsk gene 111579104 111583925 . - . gene_id "ERVLB4_10q25.2a"; transcript_id "ERVLB4_10q25.2a"; locus "ERVLB4_10q25.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1149"; model_cov "3890"; model_pct "68.1"; chr10 rmsk exon 111579104 111579148 225 - . gene_id "ERVLB4_10q25.2a"; transcript_id "ERVLB4_10q25.2a"; locus "ERVLB4_10q25.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1149"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "508"; repStart "0"; chr10 rmsk exon 111579261 111579673 1677 - . gene_id "ERVLB4_10q25.2a"; transcript_id "ERVLB4_10q25.2a"; locus "ERVLB4_10q25.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1149"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "38"; repStart "-71"; chr10 rmsk exon 111579675 111582793 21898 - . gene_id "ERVLB4_10q25.2a"; transcript_id "ERVLB4_10q25.2a"; locus "ERVLB4_10q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1149"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "2619"; repStart "0"; chr10 rmsk exon 111583153 111583925 21898 - . gene_id "ERVLB4_10q25.2a"; transcript_id "ERVLB4_10q25.2a"; locus "ERVLB4_10q25.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1149"; repClass "LTR"; repEnd "2618"; repFamily "ERVL"; repLeft "1823"; repStart "-3096"; ### ERVLB4_10q25.2b ### chr10 rmsk gene 111589997 111592726 . - . gene_id "ERVLB4_10q25.2b"; transcript_id "ERVLB4_10q25.2b"; locus "ERVLB4_10q25.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1150"; model_cov "1795"; model_pct "31.4"; chr10 rmsk exon 111589997 111591424 7181 - . gene_id "ERVLB4_10q25.2b"; transcript_id "ERVLB4_10q25.2b"; locus "ERVLB4_10q25.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1150"; repClass "LTR"; repEnd "1787"; repFamily "ERVL"; repLeft "342"; repStart "-3927"; chr10 rmsk exon 111591853 111592196 1757 - . gene_id "ERVLB4_10q25.2b"; transcript_id "ERVLB4_10q25.2b"; locus "ERVLB4_10q25.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1150"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "1"; repStart "-5363"; chr10 rmsk exon 111592197 111592236 1502 - . gene_id "ERVLB4_10q25.2b"; transcript_id "ERVLB4_10q25.2b"; locus "ERVLB4_10q25.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1150"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "517"; repStart "0"; chr10 rmsk exon 111592266 111592726 2013 - . gene_id "ERVLB4_10q25.2b"; transcript_id "ERVLB4_10q25.2b"; locus "ERVLB4_10q25.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1150"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "38"; repStart "-40"; ### ERV316A3_10q25.2b ### chr10 rmsk gene 111634423 111635608 . + . gene_id "ERV316A3_10q25.2b"; transcript_id "ERV316A3_10q25.2b"; locus "ERV316A3_10q25.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1882"; model_cov "790"; model_pct "15.1"; chr10 rmsk exon 111634423 111635185 2033 + . gene_id "ERV316A3_10q25.2b"; transcript_id "ERV316A3_10q25.2b"; locus "ERV316A3_10q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1882"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "-27"; repStart "4409"; chr10 rmsk exon 111635200 111635608 706 + . gene_id "ERV316A3_10q25.2b"; transcript_id "ERV316A3_10q25.2b"; locus "ERV316A3_10q25.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1882"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_10q25.2a ### chr10 rmsk gene 111668162 111670989 . - . gene_id "HERVL_10q25.2a"; transcript_id "HERVL_10q25.2a"; locus "HERVL_10q25.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0881"; model_cov "2364"; model_pct "41.8"; chr10 rmsk exon 111668162 111668203 3242 - . gene_id "HERVL_10q25.2a"; transcript_id "HERVL_10q25.2a"; locus "HERVL_10q25.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0881"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "403"; repStart "0"; chr10 rmsk exon 111668234 111668619 3242 - . gene_id "HERVL_10q25.2a"; transcript_id "HERVL_10q25.2a"; locus "HERVL_10q25.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0881"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "2"; repStart "-42"; chr10 rmsk exon 111668621 111669964 10275 - . gene_id "HERVL_10q25.2a"; transcript_id "HERVL_10q25.2a"; locus "HERVL_10q25.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0881"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "4325"; repStart "-1"; chr10 rmsk exon 111669961 111670989 8300 - . gene_id "HERVL_10q25.2a"; transcript_id "HERVL_10q25.2a"; locus "HERVL_10q25.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0881"; repClass "LTR"; repEnd "3227"; repFamily "ERVL"; repLeft "2191"; repStart "-2427"; ### HERVL_10q25.2b ### chr10 rmsk gene 111675067 111677213 . + . gene_id "HERVL_10q25.2b"; transcript_id "HERVL_10q25.2b"; locus "HERVL_10q25.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0882"; model_cov "1603"; model_pct "28.4"; chr10 rmsk exon 111675067 111675609 1916 + . gene_id "HERVL_10q25.2b"; transcript_id "HERVL_10q25.2b"; locus "HERVL_10q25.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0882"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 111675610 111677213 11734 + . gene_id "HERVL_10q25.2b"; transcript_id "HERVL_10q25.2b"; locus "HERVL_10q25.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0882"; repClass "LTR"; repEnd "1604"; repFamily "ERVL"; repLeft "-4050"; repStart "1"; ### ERVLE_10q25.3a ### chr10 rmsk gene 114802955 114807340 . + . gene_id "ERVLE_10q25.3a"; transcript_id "ERVLE_10q25.3a"; locus "ERVLE_10q25.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2452"; model_cov "3441"; model_pct "60.7"; chr10 rmsk exon 114802955 114802977 8896 + . gene_id "ERVLE_10q25.3a"; transcript_id "ERVLE_10q25.3a"; locus "ERVLE_10q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2452"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "-5317"; repStart "328"; chr10 rmsk exon 114803269 114803588 8896 + . gene_id "ERVLE_10q25.3a"; transcript_id "ERVLE_10q25.3a"; locus "ERVLE_10q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2452"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "-5029"; repStart "351"; chr10 rmsk exon 114804031 114805893 8896 + . gene_id "ERVLE_10q25.3a"; transcript_id "ERVLE_10q25.3a"; locus "ERVLE_10q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2452"; repClass "LTR"; repEnd "2586"; repFamily "ERVL"; repLeft "-3081"; repStart "639"; chr10 rmsk exon 114806175 114807340 8896 + . gene_id "ERVLE_10q25.3a"; transcript_id "ERVLE_10q25.3a"; locus "ERVLE_10q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2452"; repClass "LTR"; repEnd "3772"; repFamily "ERVL"; repLeft "-1895"; repStart "2587"; ### ERVLE_10q25.3b ### chr10 rmsk gene 114871646 114872569 . - . gene_id "ERVLE_10q25.3b"; transcript_id "ERVLE_10q25.3b"; locus "ERVLE_10q25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2454"; model_cov "903"; model_pct "15.9"; chr10 rmsk exon 114871646 114872212 950 - . gene_id "ERVLE_10q25.3b"; transcript_id "ERVLE_10q25.3b"; locus "ERVLE_10q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2454"; repClass "LTR"; repEnd "1384"; repFamily "ERVL"; repLeft "796"; repStart "-4283"; chr10 rmsk exon 114872267 114872569 606 - . gene_id "ERVLE_10q25.3b"; transcript_id "ERVLE_10q25.3b"; locus "ERVLE_10q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2454"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "295"; repStart "-5057"; ### ERV316A3_10q25.3a ### chr10 rmsk gene 114889429 114889986 . - . gene_id "ERV316A3_10q25.3a"; transcript_id "ERV316A3_10q25.3a"; locus "ERV316A3_10q25.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1883"; model_cov "561"; model_pct "10.7"; chr10 rmsk exon 114889429 114889986 1218 - . gene_id "ERV316A3_10q25.3a"; transcript_id "ERV316A3_10q25.3a"; locus "ERV316A3_10q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1883"; repClass "LTR"; repEnd "1574"; repFamily "ERVL"; repLeft "1013"; repStart "-3652"; ### ERVLE_10q25.3c ### chr10 rmsk gene 114895996 114898125 . + . gene_id "ERVLE_10q25.3c"; transcript_id "ERVLE_10q25.3c"; locus "ERVLE_10q25.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2455"; model_cov "814"; model_pct "14.4"; chr10 rmsk exon 114895996 114896424 1934 + . gene_id "ERVLE_10q25.3c"; transcript_id "ERVLE_10q25.3c"; locus "ERVLE_10q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2455"; repClass "LTR"; repEnd "5277"; repFamily "ERVL"; repLeft "-390"; repStart "4850"; chr10 rmsk exon 114896866 114896904 1934 + . gene_id "ERVLE_10q25.3c"; transcript_id "ERVLE_10q25.3c"; locus "ERVLE_10q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2455"; repClass "LTR"; repEnd "5309"; repFamily "ERVL"; repLeft "-358"; repStart "5278"; chr10 rmsk exon 114897485 114897628 1934 + . gene_id "ERVLE_10q25.3c"; transcript_id "ERVLE_10q25.3c"; locus "ERVLE_10q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2455"; repClass "LTR"; repEnd "5442"; repFamily "ERVL"; repLeft "-225"; repStart "5310"; chr10 rmsk exon 114897919 114898125 1934 + . gene_id "ERVLE_10q25.3c"; transcript_id "ERVLE_10q25.3c"; locus "ERVLE_10q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2455"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5443"; ### ERV316A3_10q25.3b ### chr10 rmsk gene 115249999 115253510 . - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1884"; model_cov "2682"; model_pct "51.3"; chr10 rmsk exon 115249999 115251477 3359 - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1884"; repClass "LTR"; repEnd "3447"; repFamily "ERVL"; repLeft "1908"; repStart "-1779"; chr10 rmsk exon 115251493 115252009 1658 - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1884"; repClass "LTR"; repEnd "1613"; repFamily "ERVL"; repLeft "1101"; repStart "-3613"; chr10 rmsk exon 115252331 115252649 733 - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1884"; repClass "LTR"; repEnd "844"; repFamily "ERVL"; repLeft "534"; repStart "-4382"; chr10 rmsk exon 115252751 115253066 684 - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1884"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "239"; repStart "-4666"; chr10 rmsk exon 115253073 115253510 1045 - . gene_id "ERV316A3_10q25.3b"; transcript_id "ERV316A3_10q25.3b"; locus "ERV316A3_10q25.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1884"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "3"; repStart "-1"; ### ERVLB4_10q25.3 ### chr10 rmsk gene 115270450 115276044 . - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1151"; model_cov "4409"; model_pct "77.2"; chr10 rmsk exon 115270450 115270863 1152 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-46"; repStart "-41"; chr10 rmsk exon 115270864 115271165 1992 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5407"; repStart "0"; chr10 rmsk exon 115271205 115271279 404 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "5375"; repFamily "ERVL"; repLeft "5288"; repStart "-339"; chr10 rmsk exon 115271662 115271823 20160 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "5271"; repFamily "ERVL"; repLeft "5115"; repStart "-443"; chr10 rmsk exon 115272250 115275415 20160 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "1894"; repStart "-600"; chr10 rmsk exon 115275415 115276044 3866 - . gene_id "ERVLB4_10q25.3"; transcript_id "ERVLB4_10q25.3"; locus "ERVLB4_10q25.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1151"; repClass "LTR"; repEnd "1647"; repFamily "ERVL"; repLeft "1008"; repStart "-4067"; ### MER4_10q25.3a ### chr10 rmsk gene 115499414 115501844 . - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0511"; model_cov "1432"; model_pct "21.7"; chr10 rmsk exon 115499414 115499878 3088 - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0511"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr10 rmsk exon 115499885 115500000 730 - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0511"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "6484"; repStart "-1"; chr10 rmsk exon 115500001 115500550 12893 - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0511"; repClass "LTR"; repEnd "6483"; repFamily "ERV1"; repLeft "5910"; repStart "-115"; chr10 rmsk exon 115500841 115500920 12893 - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0511"; repClass "LTR"; repEnd "5909"; repFamily "ERV1"; repLeft "5835"; repStart "-689"; chr10 rmsk exon 115501234 115501844 12893 - . gene_id "MER4_10q25.3a"; transcript_id "MER4_10q25.3a"; locus "MER4_10q25.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0511"; repClass "LTR"; repEnd "5834"; repFamily "ERV1"; repLeft "5162"; repStart "-764"; ### MER4_10q25.3b ### chr10 rmsk gene 115501933 115504223 . - . gene_id "MER4_10q25.3b"; transcript_id "MER4_10q25.3b"; locus "MER4_10q25.3b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0512"; model_cov "2331"; model_pct "35.3"; chr10 rmsk exon 115501933 115502765 12893 - . gene_id "MER4_10q25.3b"; transcript_id "MER4_10q25.3b"; locus "MER4_10q25.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0512"; repClass "LTR"; repEnd "5834"; repFamily "ERV1"; repLeft "4914"; repStart "-764"; chr10 rmsk exon 115502903 115503313 12893 - . gene_id "MER4_10q25.3b"; transcript_id "MER4_10q25.3b"; locus "MER4_10q25.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0512"; repClass "LTR"; repEnd "4240"; repFamily "ERV1"; repLeft "3837"; repStart "-2358"; chr10 rmsk exon 115503312 115504223 11441 - . gene_id "MER4_10q25.3b"; transcript_id "MER4_10q25.3b"; locus "MER4_10q25.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0512"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "2673"; repStart "-2917"; ### MER4_10q25.3c ### chr10 rmsk gene 115504450 115507335 . - . gene_id "MER4_10q25.3c"; transcript_id "MER4_10q25.3c"; locus "MER4_10q25.3c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0513"; model_cov "2671"; model_pct "40.5"; chr10 rmsk exon 115504450 115506861 11441 - . gene_id "MER4_10q25.3c"; transcript_id "MER4_10q25.3c"; locus "MER4_10q25.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0513"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "1010"; repStart "-2917"; chr10 rmsk exon 115506865 115507335 3364 - . gene_id "MER4_10q25.3c"; transcript_id "MER4_10q25.3c"; locus "MER4_10q25.3c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0513"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_10q25.3c ### chr10 rmsk gene 115524486 115527116 . - . gene_id "ERV316A3_10q25.3c"; transcript_id "ERV316A3_10q25.3c"; locus "ERV316A3_10q25.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1885"; model_cov "2195"; model_pct "42.0"; chr10 rmsk exon 115524486 115526688 4685 - . gene_id "ERV316A3_10q25.3c"; transcript_id "ERV316A3_10q25.3c"; locus "ERV316A3_10q25.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1885"; repClass "LTR"; repEnd "2214"; repFamily "ERVL"; repLeft "19"; repStart "-3012"; chr10 rmsk exon 115526692 115527116 1740 - . gene_id "ERV316A3_10q25.3c"; transcript_id "ERV316A3_10q25.3c"; locus "ERV316A3_10q25.3c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1885"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "19"; repStart "-13"; ### LTR57_10q25.3 ### chr10 rmsk gene 115619677 115621218 . - . gene_id "LTR57_10q25.3"; transcript_id "LTR57_10q25.3"; locus "LTR57_10q25.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0120"; model_cov "1143"; model_pct "21.4"; chr10 rmsk exon 115619677 115620005 1769 - . gene_id "LTR57_10q25.3"; transcript_id "LTR57_10q25.3"; locus "LTR57_10q25.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0120"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "1252"; repStart "-3771"; chr10 rmsk exon 115620860 115621218 1769 - . gene_id "LTR57_10q25.3"; transcript_id "LTR57_10q25.3"; locus "LTR57_10q25.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0120"; repClass "LTR"; repEnd "1251"; repFamily "ERVL"; repLeft "428"; repStart "-4092"; ### HERVH_10q25.3 ### chr10 rmsk gene 116480675 116486518 . + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0834"; model_cov "5061"; model_pct "65.6"; chr10 rmsk exon 116480675 116481083 2977 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr10 rmsk exon 116481086 116484358 22949 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr10 rmsk exon 116484349 116484851 3545 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr10 rmsk exon 116484854 116485514 4599 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr10 rmsk exon 116485516 116485732 1394 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr10 rmsk exon 116485731 116486109 2400 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 116486110 116486518 3077 + . gene_id "HERVH_10q25.3"; transcript_id "HERVH_10q25.3"; locus "HERVH_10q25.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0834"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER34B_10q25.3a ### chr10 rmsk gene 116989409 116992707 . + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0194"; model_cov "763"; model_pct "14.2"; chr10 rmsk exon 116989409 116989926 1504 + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0194"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "0"; repStart "11"; chr10 rmsk exon 116989949 116990277 825 + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0194"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-5007"; repStart "39"; chr10 rmsk exon 116990282 116990484 380 + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0194"; repClass "LTR"; repEnd "-467"; repFamily "ERV1"; repLeft "-5823"; repStart "-668"; chr10 rmsk exon 116990562 116990687 315 + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0194"; repClass "LTR"; repEnd "615"; repFamily "ERV1"; repLeft "-4741"; repStart "500"; chr10 rmsk exon 116992565 116992707 381 + . gene_id "MER34B_10q25.3a"; transcript_id "MER34B_10q25.3a"; locus "MER34B_10q25.3a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0194"; repClass "LTR"; repEnd "1229"; repFamily "ERV1"; repLeft "-4127"; repStart "1092"; ### MER34B_10q25.3b ### chr10 rmsk gene 116992719 116997446 . + . gene_id "MER34B_10q25.3b"; transcript_id "MER34B_10q25.3b"; locus "MER34B_10q25.3b"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0195"; model_cov "4481"; model_pct "83.7"; chr10 rmsk exon 116992719 116992881 528 + . gene_id "MER34B_10q25.3b"; transcript_id "MER34B_10q25.3b"; locus "MER34B_10q25.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0195"; repClass "LTR"; repEnd "714"; repFamily "ERV1"; repLeft "-4642"; repStart "566"; chr10 rmsk exon 116992877 116993004 911 + . gene_id "MER34B_10q25.3b"; transcript_id "MER34B_10q25.3b"; locus "MER34B_10q25.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0195"; repClass "LTR"; repEnd "1572"; repFamily "ERV1"; repLeft "-3784"; repStart "1441"; chr10 rmsk exon 116993316 116996952 9740 + . gene_id "MER34B_10q25.3b"; transcript_id "MER34B_10q25.3b"; locus "MER34B_10q25.3b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0195"; repClass "LTR"; repEnd "5355"; repFamily "ERV1"; repLeft "-1"; repStart "1153"; chr10 rmsk exon 116996959 116997446 1092 + . gene_id "MER34B_10q25.3b"; transcript_id "MER34B_10q25.3b"; locus "MER34B_10q25.3b"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0195"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_10q25.3d ### chr10 rmsk gene 117194187 117195134 . + . gene_id "ERV316A3_10q25.3d"; transcript_id "ERV316A3_10q25.3d"; locus "ERV316A3_10q25.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1886"; model_cov "561"; model_pct "10.7"; chr10 rmsk exon 117194187 117194373 2317 + . gene_id "ERV316A3_10q25.3d"; transcript_id "ERV316A3_10q25.3d"; locus "ERV316A3_10q25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1886"; repClass "LTR"; repEnd "4760"; repFamily "ERVL"; repLeft "-466"; repStart "4574"; chr10 rmsk exon 117194747 117195134 2317 + . gene_id "ERV316A3_10q25.3d"; transcript_id "ERV316A3_10q25.3d"; locus "ERV316A3_10q25.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1886"; repClass "LTR"; repEnd "5136"; repFamily "ERVL"; repLeft "-90"; repStart "4761"; ### HML3_10q26.11 ### chr10 rmsk gene 118612442 118614732 . - . gene_id "HML3_10q26.11"; transcript_id "HML3_10q26.11"; locus "HML3_10q26.11"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0162"; model_cov "2377"; model_pct "39.5"; chr10 rmsk exon 118612442 118614732 20229 - . gene_id "HML3_10q26.11"; transcript_id "HML3_10q26.11"; locus "HML3_10q26.11"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0162"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "421"; repStart "-3223"; ### ERVLE_10q26.11a ### chr10 rmsk gene 118749092 118750710 . + . gene_id "ERVLE_10q26.11a"; transcript_id "ERVLE_10q26.11a"; locus "ERVLE_10q26.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2457"; model_cov "1390"; model_pct "24.5"; chr10 rmsk exon 118749092 118750044 1379 + . gene_id "ERVLE_10q26.11a"; transcript_id "ERVLE_10q26.11a"; locus "ERVLE_10q26.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2457"; repClass "LTR"; repEnd "2271"; repFamily "ERVL"; repLeft "-3396"; repStart "1260"; chr10 rmsk exon 118750335 118750710 1379 + . gene_id "ERVLE_10q26.11a"; transcript_id "ERVLE_10q26.11a"; locus "ERVLE_10q26.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2457"; repClass "LTR"; repEnd "2651"; repFamily "ERVL"; repLeft "-3016"; repStart "2272"; ### HERVH_10q26.11 ### chr10 rmsk gene 118893657 118900344 . + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0835"; model_cov "4244"; model_pct "55.0"; chr10 rmsk exon 118893657 118894915 6944 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "2557"; repFamily "ERV1"; repLeft "-5156"; repStart "1321"; chr10 rmsk exon 118896495 118896955 2932 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "2542"; chr10 rmsk exon 118897469 118898053 2159 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "3774"; repFamily "ERV1"; repLeft "-3939"; repStart "3140"; chr10 rmsk exon 118898137 118899476 8407 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "6385"; repFamily "ERV1"; repLeft "-1328"; repStart "4882"; chr10 rmsk exon 118899504 118899916 2656 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7287"; chr10 rmsk exon 118899917 118900344 2534 + . gene_id "HERVH_10q26.11"; transcript_id "HERVH_10q26.11"; locus "HERVH_10q26.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0835"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### ERVLE_10q26.11b ### chr10 rmsk gene 118998164 119000000 . + . gene_id "ERVLE_10q26.11b"; transcript_id "ERVLE_10q26.11b"; locus "ERVLE_10q26.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2458"; model_cov "1084"; model_pct "19.1"; chr10 rmsk exon 118998164 118998729 1994 + . gene_id "ERVLE_10q26.11b"; transcript_id "ERVLE_10q26.11b"; locus "ERVLE_10q26.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2458"; repClass "LTR"; repEnd "1656"; repFamily "ERVL"; repLeft "-4011"; repStart "1059"; chr10 rmsk exon 118998845 118998987 597 + . gene_id "ERVLE_10q26.11b"; transcript_id "ERVLE_10q26.11b"; locus "ERVLE_10q26.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2458"; repClass "LTR"; repEnd "1906"; repFamily "ERVL"; repLeft "-3761"; repStart "1739"; chr10 rmsk exon 118999677 118999785 580 + . gene_id "ERVLE_10q26.11b"; transcript_id "ERVLE_10q26.11b"; locus "ERVLE_10q26.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2458"; repClass "LTR"; repEnd "1907"; repFamily "ERVL"; repLeft "-3760"; repStart "1797"; chr10 rmsk exon 118999786 119000000 608 + . gene_id "ERVLE_10q26.11b"; transcript_id "ERVLE_10q26.11b"; locus "ERVLE_10q26.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2458"; repClass "LTR"; repEnd "4321"; repFamily "ERVL"; repLeft "-1346"; repStart "4111"; ### ERVLE_10q26.12 ### chr10 rmsk gene 120293118 120294639 . + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2459"; model_cov "638"; model_pct "11.3"; chr10 rmsk exon 120293118 120293679 1061 + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2459"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-91"; repStart "6"; chr10 rmsk exon 120293680 120293773 316 + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2459"; repClass "LTR"; repEnd "301"; repFamily "ERVL"; repLeft "-5366"; repStart "209"; chr10 rmsk exon 120293808 120293892 467 + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2459"; repClass "LTR"; repEnd "3355"; repFamily "ERVL"; repLeft "-2312"; repStart "3271"; chr10 rmsk exon 120293889 120294070 1668 + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2459"; repClass "LTR"; repEnd "5405"; repFamily "ERVL"; repLeft "-262"; repStart "5204"; chr10 rmsk exon 120294398 120294639 1668 + . gene_id "ERVLE_10q26.12"; transcript_id "ERVLE_10q26.12"; locus "ERVLE_10q26.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2459"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5406"; ### ERVL_10q26.12 ### chr10 rmsk gene 120832824 120833238 . + . gene_id "ERVL_10q26.12"; transcript_id "ERVL_10q26.12"; locus "ERVL_10q26.12"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0297"; model_cov "578"; model_pct "10.0"; chr10 rmsk exon 120832824 120833238 807 + . gene_id "ERVL_10q26.12"; transcript_id "ERVL_10q26.12"; locus "ERVL_10q26.12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0297"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "-1193"; repStart "3986"; ### HERVH_10q26.12 ### chr10 rmsk gene 120844932 120850561 . + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0836"; model_cov "4911"; model_pct "63.7"; chr10 rmsk exon 120844932 120845403 4059 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr10 rmsk exon 120845404 120848244 16447 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr10 rmsk exon 120848239 120848386 911 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr10 rmsk exon 120848377 120848876 3392 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr10 rmsk exon 120848879 120849540 4070 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr10 rmsk exon 120849538 120849752 1289 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr10 rmsk exon 120849751 120850126 2570 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr10 rmsk exon 120850127 120850561 3411 + . gene_id "HERVH_10q26.12"; transcript_id "HERVH_10q26.12"; locus "HERVH_10q26.12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0836"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_10q26.12 ### chr10 rmsk gene 120989541 120996023 . + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; category "internal"; intModel "MER61-int"; locid "MER61-int_0255"; model_cov "6387"; model_pct "100.0"; chr10 rmsk exon 120989541 120989657 317 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "-1811"; repFamily "ERV1"; repLeft "-7028"; repStart "-1931"; chr10 rmsk exon 120989627 120990246 1776 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "-1273"; repFamily "ERV1"; repLeft "-6490"; repStart "-1765"; chr10 rmsk exon 120990364 120992022 4352 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "1000"; repFamily "ERV1"; repLeft "-4217"; repStart "-1998"; chr10 rmsk exon 120992223 120993514 13609 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "2033"; repFamily "ERV1"; repLeft "-3184"; repStart "1210"; chr10 rmsk exon 120993811 120994489 13609 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "2677"; repFamily "ERV1"; repLeft "-2540"; repStart "2034"; chr10 rmsk exon 120994642 120996023 13609 + . gene_id "MER61_10q26.12"; transcript_id "MER61_10q26.12"; locus "MER61_10q26.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0255"; repClass "LTR"; repEnd "3989"; repFamily "ERV1"; repLeft "-1228"; repStart "2678"; ### ERV316A3_10q26.12 ### chr10 rmsk gene 121060523 121062902 . + . gene_id "ERV316A3_10q26.12"; transcript_id "ERV316A3_10q26.12"; locus "ERV316A3_10q26.12"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1889"; model_cov "1642"; model_pct "31.4"; chr10 rmsk exon 121060523 121060898 1058 + . gene_id "ERV316A3_10q26.12"; transcript_id "ERV316A3_10q26.12"; locus "ERV316A3_10q26.12"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1889"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "-17"; chr10 rmsk exon 121060990 121062347 1908 + . gene_id "ERV316A3_10q26.12"; transcript_id "ERV316A3_10q26.12"; locus "ERV316A3_10q26.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1889"; repClass "LTR"; repEnd "1534"; repFamily "ERVL"; repLeft "-3692"; repStart "115"; chr10 rmsk exon 121062444 121062661 737 + . gene_id "ERV316A3_10q26.12"; transcript_id "ERV316A3_10q26.12"; locus "ERV316A3_10q26.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1889"; repClass "LTR"; repEnd "2297"; repFamily "ERVL"; repLeft "-2929"; repStart "2074"; chr10 rmsk exon 121062812 121062902 281 + . gene_id "ERV316A3_10q26.12"; transcript_id "ERV316A3_10q26.12"; locus "ERV316A3_10q26.12"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1889"; repClass "LTR"; repEnd "154"; repFamily "ERVL"; repLeft "-284"; repStart "61"; ### MER4B_10q26.13 ### chr10 rmsk gene 122666381 122667249 . - . gene_id "MER4B_10q26.13"; transcript_id "MER4B_10q26.13"; locus "MER4B_10q26.13"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0295"; model_cov "1409"; model_pct "20.8"; chr10 rmsk exon 122666381 122666620 1080 - . gene_id "MER4B_10q26.13"; transcript_id "MER4B_10q26.13"; locus "MER4B_10q26.13"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0295"; repClass "LTR"; repEnd "1271"; repFamily "ERV1"; repLeft "1036"; repStart "-5487"; chr10 rmsk exon 122666628 122667249 2002 - . gene_id "MER4B_10q26.13"; transcript_id "MER4B_10q26.13"; locus "MER4B_10q26.13"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0295"; repClass "LTR"; repEnd "3578"; repFamily "ERV1"; repLeft "2404"; repStart "-3180"; ### MER4_10q26.13 ### chr10 rmsk gene 122667616 122669659 . - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0515"; model_cov "1217"; model_pct "18.4"; chr10 rmsk exon 122667616 122667693 378 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0515"; repClass "LTR"; repEnd "3229"; repFamily "ERV1"; repLeft "3154"; repStart "-3369"; chr10 rmsk exon 122667702 122668092 1606 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0515"; repClass "LTR"; repEnd "2537"; repFamily "ERV1"; repLeft "2111"; repStart "-4061"; chr10 rmsk exon 122668124 122668234 440 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0515"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-739"; repStart "-7237"; chr10 rmsk exon 122668203 122668275 262 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0515"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "613"; repStart "-5912"; chr10 rmsk exon 122668462 122668945 2351 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0515"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "12"; repStart "-6043"; chr10 rmsk exon 122668961 122669183 956 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0515"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "248"; repStart "0"; chr10 rmsk exon 122669417 122669659 1717 - . gene_id "MER4_10q26.13"; transcript_id "MER4_10q26.13"; locus "MER4_10q26.13"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0515"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "1"; repStart "-224"; ### HERVL_10q26.13a ### chr10 rmsk gene 123814109 123820241 . + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0883"; model_cov "4948"; model_pct "87.5"; chr10 rmsk exon 123814109 123814554 3497 + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0883"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10 rmsk exon 123814555 123814743 10982 + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0883"; repClass "LTR"; repEnd "187"; repFamily "ERVL"; repLeft "-5467"; repStart "1"; chr10 rmsk exon 123815037 123816237 10982 + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0883"; repClass "LTR"; repEnd "1383"; repFamily "ERVL"; repLeft "-4271"; repStart "188"; chr10 rmsk exon 123816232 123819795 29350 + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0883"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2087"; chr10 rmsk exon 123819796 123820241 3518 + . gene_id "HERVL_10q26.13a"; transcript_id "HERVL_10q26.13a"; locus "HERVL_10q26.13a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0883"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_10q26.13 ### chr10 rmsk gene 124210024 124211007 . + . gene_id "ERVLE_10q26.13"; transcript_id "ERVLE_10q26.13"; locus "ERVLE_10q26.13"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2461"; model_cov "771"; model_pct "13.6"; chr10 rmsk exon 124210024 124210460 570 + . gene_id "ERVLE_10q26.13"; transcript_id "ERVLE_10q26.13"; locus "ERVLE_10q26.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2461"; repClass "LTR"; repEnd "1736"; repFamily "ERVL"; repLeft "-3931"; repStart "1287"; chr10 rmsk exon 124210641 124210698 304 + . gene_id "ERVLE_10q26.13"; transcript_id "ERVLE_10q26.13"; locus "ERVLE_10q26.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2461"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "-2865"; repStart "2745"; chr10 rmsk exon 124210749 124211007 854 + . gene_id "ERVLE_10q26.13"; transcript_id "ERVLE_10q26.13"; locus "ERVLE_10q26.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2461"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "-2519"; repStart "2883"; ### ERV316A3_10q26.13 ### chr10 rmsk gene 125335963 125336987 . + . gene_id "ERV316A3_10q26.13"; transcript_id "ERV316A3_10q26.13"; locus "ERV316A3_10q26.13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1890"; model_cov "1031"; model_pct "19.7"; chr10 rmsk exon 125335963 125336987 3340 + . gene_id "ERV316A3_10q26.13"; transcript_id "ERV316A3_10q26.13"; locus "ERV316A3_10q26.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1890"; repClass "LTR"; repEnd "4602"; repFamily "ERVL"; repLeft "-624"; repStart "3571"; ### HERVL_10q26.13b ### chr10 rmsk gene 125621520 125623461 . - . gene_id "HERVL_10q26.13b"; transcript_id "HERVL_10q26.13b"; locus "HERVL_10q26.13b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0884"; model_cov "1142"; model_pct "20.2"; chr10 rmsk exon 125621520 125622102 2284 - . gene_id "HERVL_10q26.13b"; transcript_id "HERVL_10q26.13b"; locus "HERVL_10q26.13b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0884"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr10 rmsk exon 125622103 125622611 3315 - . gene_id "HERVL_10q26.13b"; transcript_id "HERVL_10q26.13b"; locus "HERVL_10q26.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0884"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5130"; repStart "0"; chr10 rmsk exon 125622668 125623271 4520 - . gene_id "HERVL_10q26.13b"; transcript_id "HERVL_10q26.13b"; locus "HERVL_10q26.13b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0884"; repClass "LTR"; repEnd "5137"; repFamily "ERVL"; repLeft "4519"; repStart "-517"; chr10 rmsk exon 125623272 125623461 898 - . gene_id "HERVL_10q26.13b"; transcript_id "HERVL_10q26.13b"; locus "HERVL_10q26.13b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0884"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "1"; repStart "-279"; ### ERVLB4_10q26.2a ### chr10 rmsk gene 127648405 127649505 . - . gene_id "ERVLB4_10q26.2a"; transcript_id "ERVLB4_10q26.2a"; locus "ERVLB4_10q26.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1152"; model_cov "1145"; model_pct "20.0"; chr10 rmsk exon 127648405 127649505 6283 - . gene_id "ERVLB4_10q26.2a"; transcript_id "ERVLB4_10q26.2a"; locus "ERVLB4_10q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1152"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1021"; repStart "-3548"; ### ERVLB4_10q26.2b ### chr10 rmsk gene 127949338 127956187 . + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1153"; model_cov "5709"; model_pct "99.9"; chr10 rmsk exon 127949338 127950814 31405 + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1153"; repClass "LTR"; repEnd "1626"; repFamily "ERVL"; repLeft "-4088"; repStart "1"; chr10 rmsk exon 127951106 127952196 31405 + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1153"; repClass "LTR"; repEnd "2729"; repFamily "ERVL"; repLeft "-2985"; repStart "1627"; chr10 rmsk exon 127952825 127955286 31405 + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1153"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "-484"; repStart "2730"; chr10 rmsk exon 127955341 127955668 31405 + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1153"; repClass "LTR"; repEnd "5577"; repFamily "ERVL"; repLeft "-137"; repStart "5231"; chr10 rmsk exon 127956046 127956187 31405 + . gene_id "ERVLB4_10q26.2b"; transcript_id "ERVLB4_10q26.2b"; locus "ERVLB4_10q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1153"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5578"; ### ERV316A3_10q26.3a ### chr10 rmsk gene 128863726 128865215 . + . gene_id "ERV316A3_10q26.3a"; transcript_id "ERV316A3_10q26.3a"; locus "ERV316A3_10q26.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1891"; model_cov "1377"; model_pct "26.3"; chr10 rmsk exon 128863726 128865007 2431 + . gene_id "ERV316A3_10q26.3a"; transcript_id "ERV316A3_10q26.3a"; locus "ERV316A3_10q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1891"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "3844"; chr10 rmsk exon 128865070 128865215 298 + . gene_id "ERV316A3_10q26.3a"; transcript_id "ERV316A3_10q26.3a"; locus "ERV316A3_10q26.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1891"; repClass "LTR"; repEnd "242"; repFamily "ERVL"; repLeft "-209"; repStart "95"; ### ERVLB4_10q26.3a ### chr10 rmsk gene 129155580 129157786 . + . gene_id "ERVLB4_10q26.3a"; transcript_id "ERVLB4_10q26.3a"; locus "ERVLB4_10q26.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1154"; model_cov "1692"; model_pct "29.6"; chr10 rmsk exon 129155580 129157222 9959 + . gene_id "ERVLB4_10q26.3a"; transcript_id "ERVLB4_10q26.3a"; locus "ERVLB4_10q26.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1154"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "4015"; chr10 rmsk exon 129157231 129157729 2802 + . gene_id "ERVLB4_10q26.3a"; transcript_id "ERVLB4_10q26.3a"; locus "ERVLB4_10q26.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1154"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-45"; repStart "3"; chr10 rmsk exon 129157759 129157786 2802 + . gene_id "ERVLB4_10q26.3a"; transcript_id "ERVLB4_10q26.3a"; locus "ERVLB4_10q26.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1154"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-10"; repStart "512"; ### HML3_10q26.3 ### chr10 rmsk gene 130290809 130297789 . + . gene_id "HML3_10q26.3"; transcript_id "HML3_10q26.3"; locus "HML3_10q26.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0164"; model_cov "6020"; model_pct "100.0"; chr10 rmsk exon 130290809 130291322 4338 + . gene_id "HML3_10q26.3"; transcript_id "HML3_10q26.3"; locus "HML3_10q26.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0164"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr10 rmsk exon 130291323 130297285 49997 + . gene_id "HML3_10q26.3"; transcript_id "HML3_10q26.3"; locus "HML3_10q26.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0164"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr10 rmsk exon 130297286 130297789 4094 + . gene_id "HML3_10q26.3"; transcript_id "HML3_10q26.3"; locus "HML3_10q26.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0164"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_10q26.3a ### chr10 rmsk gene 130872631 130879142 . + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2462"; model_cov "3868"; model_pct "68.3"; chr10 rmsk exon 130872631 130873343 1251 + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2462"; repClass "LTR"; repEnd "1001"; repFamily "ERVL"; repLeft "-4666"; repStart "309"; chr10 rmsk exon 130873703 130875281 3540 + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2462"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "-2767"; repStart "1259"; chr10 rmsk exon 130877140 130877271 437 + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2462"; repClass "LTR"; repEnd "3551"; repFamily "ERVL"; repLeft "-2116"; repStart "3418"; chr10 rmsk exon 130877376 130878377 2214 + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2462"; repClass "LTR"; repEnd "4727"; repFamily "ERVL"; repLeft "-940"; repStart "3660"; chr10 rmsk exon 130878795 130879142 826 + . gene_id "ERVLE_10q26.3a"; transcript_id "ERVLE_10q26.3a"; locus "ERVLE_10q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2462"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-492"; repStart "4840"; ### ERVLE_10q26.3b ### chr10 rmsk gene 131089724 131091312 . - . gene_id "ERVLE_10q26.3b"; transcript_id "ERVLE_10q26.3b"; locus "ERVLE_10q26.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2463"; model_cov "701"; model_pct "12.4"; chr10 rmsk exon 131089724 131089965 343 - . gene_id "ERVLE_10q26.3b"; transcript_id "ERVLE_10q26.3b"; locus "ERVLE_10q26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2463"; repClass "LTR"; repEnd "4941"; repFamily "ERVL"; repLeft "4686"; repStart "-726"; chr10 rmsk exon 131090442 131090665 443 - . gene_id "ERVLE_10q26.3b"; transcript_id "ERVLE_10q26.3b"; locus "ERVLE_10q26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2463"; repClass "LTR"; repEnd "4094"; repFamily "ERVL"; repLeft "3860"; repStart "-1573"; chr10 rmsk exon 131091112 131091312 310 - . gene_id "ERVLE_10q26.3b"; transcript_id "ERVLE_10q26.3b"; locus "ERVLE_10q26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2463"; repClass "LTR"; repEnd "3381"; repFamily "ERVL"; repLeft "3169"; repStart "-2286"; ### ERV316A3_10q26.3b ### chr10 rmsk gene 131421199 131422918 . - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1892"; model_cov "1328"; model_pct "25.4"; chr10 rmsk exon 131421199 131421356 450 - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1892"; repClass "LTR"; repEnd "4403"; repFamily "ERVL"; repLeft "4245"; repStart "-823"; chr10 rmsk exon 131421580 131422073 1244 - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1892"; repClass "LTR"; repEnd "4370"; repFamily "ERVL"; repLeft "3883"; repStart "-856"; chr10 rmsk exon 131422187 131422385 290 - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1892"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "3700"; repStart "-1335"; chr10 rmsk exon 131422406 131422593 452 - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1892"; repClass "LTR"; repEnd "2684"; repFamily "ERVL"; repLeft "2430"; repStart "-2542"; chr10 rmsk exon 131422685 131422918 389 - . gene_id "ERV316A3_10q26.3b"; transcript_id "ERV316A3_10q26.3b"; locus "ERV316A3_10q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1892"; repClass "LTR"; repEnd "2071"; repFamily "ERVL"; repLeft "1833"; repStart "-3155"; ### ERVLE_10q26.3c ### chr10 rmsk gene 131550938 131551590 . + . gene_id "ERVLE_10q26.3c"; transcript_id "ERVLE_10q26.3c"; locus "ERVLE_10q26.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2464"; model_cov "667"; model_pct "11.8"; chr10 rmsk exon 131550938 131551590 1007 + . gene_id "ERVLE_10q26.3c"; transcript_id "ERVLE_10q26.3c"; locus "ERVLE_10q26.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2464"; repClass "LTR"; repEnd "1174"; repFamily "ERVL"; repLeft "-4493"; repStart "507"; ### ERVLE_10q26.3d ### chr10 rmsk gene 132031248 132036125 . + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2465"; model_cov "3060"; model_pct "54.0"; chr10 rmsk exon 132031248 132031429 316 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "1193"; repFamily "ERVL"; repLeft "-4474"; repStart "1002"; chr10 rmsk exon 132031937 132032287 3957 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "-4069"; repStart "1236"; chr10 rmsk exon 132032593 132032956 3957 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "1940"; repFamily "ERVL"; repLeft "-3727"; repStart "1599"; chr10 rmsk exon 132033252 132034188 3957 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "2928"; repFamily "ERVL"; repLeft "-2739"; repStart "1941"; chr10 rmsk exon 132034553 132034739 3957 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "3120"; repFamily "ERVL"; repLeft "-2547"; repStart "2929"; chr10 rmsk exon 132034867 132035149 3957 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "3410"; repFamily "ERVL"; repLeft "-2257"; repStart "3121"; chr10 rmsk exon 132035489 132035971 937 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1698"; repStart "3402"; chr10 rmsk exon 132035998 132036125 323 + . gene_id "ERVLE_10q26.3d"; transcript_id "ERVLE_10q26.3d"; locus "ERVLE_10q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2465"; repClass "LTR"; repEnd "4102"; repFamily "ERVL"; repLeft "-1565"; repStart "3970"; ### HERVL_10q26.3a ### chr10 rmsk gene 132672827 132675060 . - . gene_id "HERVL_10q26.3a"; transcript_id "HERVL_10q26.3a"; locus "HERVL_10q26.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0886"; model_cov "2241"; model_pct "39.6"; chr10 rmsk exon 132672827 132675060 16522 - . gene_id "HERVL_10q26.3a"; transcript_id "HERVL_10q26.3a"; locus "HERVL_10q26.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0886"; repClass "LTR"; repEnd "5303"; repFamily "ERVL"; repLeft "3062"; repStart "-351"; ### HERVL_10q26.3b ### chr10 rmsk gene 133495747 133502939 . - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0887"; model_cov "5327"; model_pct "94.2"; chr10 rmsk exon 133495747 133496167 2545 - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0887"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "39"; repStart "0"; chr10 rmsk exon 133496169 133496880 21810 - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0887"; repClass "LTR"; repEnd "5330"; repFamily "ERVL"; repLeft "4622"; repStart "-324"; chr10 rmsk exon 133497879 133500000 21810 - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0887"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "2508"; repStart "-1033"; chr10 rmsk exon 133500001 133502509 20595 - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0887"; repClass "LTR"; repEnd "2507"; repFamily "ERVL"; repLeft "1"; repStart "-3147"; chr10 rmsk exon 133502510 133502939 2997 - . gene_id "HERVL_10q26.3b"; transcript_id "HERVL_10q26.3b"; locus "HERVL_10q26.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0887"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVL74_10q26.3 ### chr10 rmsk gene 133544234 133545757 . - . gene_id "HERVL74_10q26.3"; transcript_id "HERVL74_10q26.3"; locus "HERVL74_10q26.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0067"; model_cov "1156"; model_pct "20.3"; chr10 rmsk exon 133544234 133544483 785 - . gene_id "HERVL74_10q26.3"; transcript_id "HERVL74_10q26.3"; locus "HERVL74_10q26.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0067"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "4862"; repStart "-550"; chr10 rmsk exon 133544946 133545757 3477 - . gene_id "HERVL74_10q26.3"; transcript_id "HERVL74_10q26.3"; locus "HERVL74_10q26.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0067"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "3653"; repStart "-1149"; ### ERVLB4_10q26.3b ### chr10 rmsk gene 133552152 133552825 . + . gene_id "ERVLB4_10q26.3b"; transcript_id "ERVLB4_10q26.3b"; locus "ERVLB4_10q26.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1155"; model_cov "723"; model_pct "12.7"; chr10 rmsk exon 133552152 133552825 3675 + . gene_id "ERVLB4_10q26.3b"; transcript_id "ERVLB4_10q26.3b"; locus "ERVLB4_10q26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1155"; repClass "LTR"; repEnd "5076"; repFamily "ERVL"; repLeft "-638"; repStart "4353"; ### MER4_10q26.3 ### chr10 rmsk gene 133560793 133562261 . + . gene_id "MER4_10q26.3"; transcript_id "MER4_10q26.3"; locus "MER4_10q26.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0520"; model_cov "2010"; model_pct "30.5"; chr10 rmsk exon 133560793 133561247 2426 + . gene_id "MER4_10q26.3"; transcript_id "MER4_10q26.3"; locus "MER4_10q26.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0520"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "-96"; chr10 rmsk exon 133561251 133562261 3688 + . gene_id "MER4_10q26.3"; transcript_id "MER4_10q26.3"; locus "MER4_10q26.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0520"; repClass "LTR"; repEnd "2663"; repFamily "ERV1"; repLeft "-3935"; repStart "653"; ### HML1_10q26.3 ### chr10 rmsk gene 133603540 133608205 . + . gene_id "HML1_10q26.3"; transcript_id "HML1_10q26.3"; locus "HML1_10q26.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0074"; model_cov "4088"; model_pct "67.1"; chr10 rmsk exon 133603540 133604156 3831 + . gene_id "HML1_10q26.3"; transcript_id "HML1_10q26.3"; locus "HML1_10q26.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0074"; repClass "LTR"; repEnd "605"; repFamily "ERVK"; repLeft "-3"; repStart "16"; chr10 rmsk exon 133604160 133604268 643 + . gene_id "HML1_10q26.3"; transcript_id "HML1_10q26.3"; locus "HML1_10q26.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0074"; repClass "LTR"; repEnd "109"; repFamily "ERVK"; repLeft "-5987"; repStart "1"; chr10 rmsk exon 133604269 133608205 29197 + . gene_id "HML1_10q26.3"; transcript_id "HML1_10q26.3"; locus "HML1_10q26.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0074"; repClass "LTR"; repEnd "5143"; repFamily "ERVK"; repLeft "-953"; repStart "1163"; ### HERVK14C_10q26.3 ### chr10 rmsk gene 133608443 133609346 . + . gene_id "HERVK14C_10q26.3"; transcript_id "HERVK14C_10q26.3"; locus "HERVK14C_10q26.3"; category "internal"; intModel "HERVK14C-int"; locid "HERVK14C-int_0020"; model_cov "908"; model_pct "12.2"; chr10 rmsk exon 133608443 133609346 3058 + . gene_id "HERVK14C_10q26.3"; transcript_id "HERVK14C_10q26.3"; locus "HERVK14C_10q26.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0020"; repClass "LTR"; repEnd "7409"; repFamily "ERVK"; repLeft "-25"; repStart "6501"; ### HERV3_11p15.5 ### chr11 rmsk gene 322542 324821 . - . gene_id "HERV3_11p15.5"; transcript_id "HERV3_11p15.5"; locus "HERV3_11p15.5"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0041"; model_cov "1255"; model_pct "14.9"; chr11 rmsk exon 322542 322580 249 - . gene_id "HERV3_11p15.5"; transcript_id "HERV3_11p15.5"; locus "HERV3_11p15.5"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0041"; repClass "LTR"; repEnd "358"; repFamily "ERV1"; repLeft "320"; repStart "-317"; chr11 rmsk exon 322581 322928 2366 - . gene_id "HERV3_11p15.5"; transcript_id "HERV3_11p15.5"; locus "HERV3_11p15.5"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0041"; repClass "LTR"; repEnd "358"; repFamily "ERV1"; repLeft "1"; repStart "-317"; chr11 rmsk exon 323266 323767 5760 - . gene_id "HERV3_11p15.5"; transcript_id "HERV3_11p15.5"; locus "HERV3_11p15.5"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0041"; repClass "LTR"; repEnd "5518"; repFamily "ERV1"; repLeft "5041"; repStart "-2908"; chr11 rmsk exon 324061 324821 5760 - . gene_id "HERV3_11p15.5"; transcript_id "HERV3_11p15.5"; locus "HERV3_11p15.5"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0041"; repClass "LTR"; repEnd "5040"; repFamily "ERV1"; repLeft "4262"; repStart "-3386"; ### MER34B_11p15.5 ### chr11 rmsk gene 339634 342458 . - . gene_id "MER34B_11p15.5"; transcript_id "MER34B_11p15.5"; locus "MER34B_11p15.5"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0197"; model_cov "1299"; model_pct "24.3"; chr11 rmsk exon 339634 340031 807 - . gene_id "MER34B_11p15.5"; transcript_id "MER34B_11p15.5"; locus "MER34B_11p15.5"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0197"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "1798"; repStart "-2963"; chr11 rmsk exon 340078 340692 1195 - . gene_id "MER34B_11p15.5"; transcript_id "MER34B_11p15.5"; locus "MER34B_11p15.5"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0197"; repClass "LTR"; repEnd "1812"; repFamily "ERV1"; repLeft "1217"; repStart "-3544"; chr11 rmsk exon 342281 342333 268 - . gene_id "MER34B_11p15.5"; transcript_id "MER34B_11p15.5"; locus "MER34B_11p15.5"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0197"; repClass "LTR"; repEnd "112"; repFamily "ERV1"; repLeft "60"; repStart "-473"; chr11 rmsk exon 342356 342458 352 - . gene_id "MER34B_11p15.5"; transcript_id "MER34B_11p15.5"; locus "MER34B_11p15.5"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0197"; repClass "LTR"; repEnd "215"; repFamily "ERV1"; repLeft "106"; repStart "-5141"; ### MER41_11p15.5a ### chr11 rmsk gene 347589 349098 . + . gene_id "MER41_11p15.5a"; transcript_id "MER41_11p15.5a"; locus "MER41_11p15.5a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0353"; model_cov "947"; model_pct "15.9"; chr11 rmsk exon 347589 347727 5477 + . gene_id "MER41_11p15.5a"; transcript_id "MER41_11p15.5a"; locus "MER41_11p15.5a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0353"; repClass "LTR"; repEnd "4582"; repFamily "ERV1"; repLeft "-1364"; repStart "4441"; chr11 rmsk exon 348018 348436 5477 + . gene_id "MER41_11p15.5a"; transcript_id "MER41_11p15.5a"; locus "MER41_11p15.5a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0353"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "-933"; repStart "4583"; chr11 rmsk exon 348733 349098 5477 + . gene_id "MER41_11p15.5a"; transcript_id "MER41_11p15.5a"; locus "MER41_11p15.5a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0353"; repClass "LTR"; repEnd "5390"; repFamily "ERV1"; repLeft "-556"; repStart "5014"; ### MER41_11p15.5b ### chr11 rmsk gene 349106 352592 . - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0354"; model_cov "1450"; model_pct "24.4"; chr11 rmsk exon 349106 349504 1791 - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0354"; repClass "LTR"; repEnd "1972"; repFamily "ERV1"; repLeft "1598"; repStart "-3974"; chr11 rmsk exon 350175 350263 732 - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0354"; repClass "LTR"; repEnd "1078"; repFamily "ERV1"; repLeft "993"; repStart "-4868"; chr11 rmsk exon 350712 351583 4274 - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0354"; repClass "LTR"; repEnd "992"; repFamily "ERV1"; repLeft "1"; repStart "-4954"; chr11 rmsk exon 351731 351828 4069 - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0354"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "456"; repStart "0"; chr11 rmsk exon 352134 352592 4069 - . gene_id "MER41_11p15.5b"; transcript_id "MER41_11p15.5b"; locus "MER41_11p15.5b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0354"; repClass "LTR"; repEnd "455"; repFamily "ERV1"; repLeft "1"; repStart "-99"; ### ERVLE_11p15.5a ### chr11 rmsk gene 359363 366821 . + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2466"; model_cov "3577"; model_pct "63.1"; chr11 rmsk exon 359363 359496 524 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "1640"; repFamily "ERVL"; repLeft "-4027"; repStart "1500"; chr11 rmsk exon 360560 361379 1980 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3216"; repStart "1635"; chr11 rmsk exon 362389 362971 1980 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "3162"; repFamily "ERVL"; repLeft "-2505"; repStart "2405"; chr11 rmsk exon 364312 365032 885 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "4033"; repFamily "ERVL"; repLeft "-1634"; repStart "3306"; chr11 rmsk exon 365329 365592 700 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "4808"; repFamily "ERVL"; repLeft "-859"; repStart "4528"; chr11 rmsk exon 366008 366821 1721 + . gene_id "ERVLE_11p15.5a"; transcript_id "ERVLE_11p15.5a"; locus "ERVLE_11p15.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2466"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "4809"; ### ERVLB4_11p15.5a ### chr11 rmsk gene 1059426 1060042 . + . gene_id "ERVLB4_11p15.5a"; transcript_id "ERVLB4_11p15.5a"; locus "ERVLB4_11p15.5a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1156"; model_cov "591"; model_pct "10.3"; chr11 rmsk exon 1059426 1059900 1441 + . gene_id "ERVLB4_11p15.5a"; transcript_id "ERVLB4_11p15.5a"; locus "ERVLB4_11p15.5a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1156"; repClass "LTR"; repEnd "1522"; repFamily "ERVL"; repLeft "-4192"; repStart "1021"; chr11 rmsk exon 1059952 1060042 263 + . gene_id "ERVLB4_11p15.5a"; transcript_id "ERVLB4_11p15.5a"; locus "ERVLB4_11p15.5a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1156"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "-3492"; repStart "2132"; ### ERVLE_11p15.5b ### chr11 rmsk gene 1360002 1364808 . - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2467"; model_cov "3394"; model_pct "59.9"; chr11 rmsk exon 1360002 1360912 1019 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "3468"; repStart "-1313"; chr11 rmsk exon 1361084 1361559 1230 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "3387"; repFamily "ERVL"; repLeft "2879"; repStart "-2280"; chr11 rmsk exon 1361771 1362316 1399 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "2833"; repFamily "ERVL"; repLeft "2278"; repStart "-2834"; chr11 rmsk exon 1362828 1362982 515 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "1758"; repFamily "ERVL"; repLeft "1604"; repStart "-3909"; chr11 rmsk exon 1363334 1363460 515 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "1603"; repFamily "ERVL"; repLeft "1475"; repStart "-4064"; chr11 rmsk exon 1363628 1363977 643 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "855"; repStart "-4444"; chr11 rmsk exon 1364024 1364808 1396 - . gene_id "ERVLE_11p15.5b"; transcript_id "ERVLE_11p15.5b"; locus "ERVLE_11p15.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2467"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "1"; repStart "-4871"; ### ERV316A3_11p15.5a ### chr11 rmsk gene 1714575 1715748 . - . gene_id "ERV316A3_11p15.5a"; transcript_id "ERV316A3_11p15.5a"; locus "ERV316A3_11p15.5a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1894"; model_cov "864"; model_pct "16.5"; chr11 rmsk exon 1714575 1714922 825 - . gene_id "ERV316A3_11p15.5a"; transcript_id "ERV316A3_11p15.5a"; locus "ERV316A3_11p15.5a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1894"; repClass "LTR"; repEnd "896"; repFamily "ERVL"; repLeft "532"; repStart "-4330"; chr11 rmsk exon 1714947 1715439 819 - . gene_id "ERV316A3_11p15.5a"; transcript_id "ERV316A3_11p15.5a"; locus "ERV316A3_11p15.5a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1894"; repClass "LTR"; repEnd "733"; repFamily "ERVL"; repLeft "233"; repStart "-4493"; chr11 rmsk exon 1715454 1715748 667 - . gene_id "ERV316A3_11p15.5a"; transcript_id "ERV316A3_11p15.5a"; locus "ERV316A3_11p15.5a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1894"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "118"; repStart "-11"; ### ERV316A3_11p15.5b ### chr11 rmsk gene 2072427 2073468 . - . gene_id "ERV316A3_11p15.5b"; transcript_id "ERV316A3_11p15.5b"; locus "ERV316A3_11p15.5b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1895"; model_cov "565"; model_pct "10.8"; chr11 rmsk exon 2072427 2072711 439 - . gene_id "ERV316A3_11p15.5b"; transcript_id "ERV316A3_11p15.5b"; locus "ERV316A3_11p15.5b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1895"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "47"; repStart "-144"; chr11 rmsk exon 2072924 2073468 1304 - . gene_id "ERV316A3_11p15.5b"; transcript_id "ERV316A3_11p15.5b"; locus "ERV316A3_11p15.5b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1895"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "4387"; repStart "-274"; ### ERVLB4_11p15.5b ### chr11 rmsk gene 2221298 2221987 . + . gene_id "ERVLB4_11p15.5b"; transcript_id "ERVLB4_11p15.5b"; locus "ERVLB4_11p15.5b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1158"; model_cov "756"; model_pct "13.2"; chr11 rmsk exon 2221298 2221987 963 + . gene_id "ERVLB4_11p15.5b"; transcript_id "ERVLB4_11p15.5b"; locus "ERVLB4_11p15.5b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1158"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "-3451"; repStart "1507"; ### ERVL_11p15.5 ### chr11 rmsk gene 2232877 2238198 . + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0299"; model_cov "3488"; model_pct "60.6"; chr11 rmsk exon 2232877 2233486 2570 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5"; repStart "-46"; chr11 rmsk exon 2233488 2233698 1041 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "-5496"; repStart "51"; chr11 rmsk exon 2234036 2234301 1150 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "522"; repFamily "ERVL"; repLeft "-5235"; repStart "253"; chr11 rmsk exon 2234803 2237232 9669 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "-2734"; repStart "561"; chr11 rmsk exon 2237535 2237736 9669 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "3232"; repFamily "ERVL"; repLeft "-2525"; repStart "3024"; chr11 rmsk exon 2237859 2238198 2187 + . gene_id "ERVL_11p15.5"; transcript_id "ERVL_11p15.5"; locus "ERVL_11p15.5"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0299"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "-2161"; repStart "3257"; ### ERVLB4_11p15.5c ### chr11 rmsk gene 2292785 2296646 . - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1159"; model_cov "2933"; model_pct "51.3"; chr11 rmsk exon 2292785 2292956 420 - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1159"; repClass "LTR"; repEnd "5691"; repFamily "ERVL"; repLeft "5509"; repStart "-23"; chr11 rmsk exon 2293349 2294350 2477 - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1159"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "4458"; repStart "-229"; chr11 rmsk exon 2294562 2294998 1544 - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1159"; repClass "LTR"; repEnd "4175"; repFamily "ERVL"; repLeft "3736"; repStart "-1539"; chr11 rmsk exon 2294983 2295474 1848 - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1159"; repClass "LTR"; repEnd "3543"; repFamily "ERVL"; repLeft "3021"; repStart "-2171"; chr11 rmsk exon 2295919 2296646 2676 - . gene_id "ERVLB4_11p15.5c"; transcript_id "ERVLB4_11p15.5c"; locus "ERVLB4_11p15.5c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1159"; repClass "LTR"; repEnd "2539"; repFamily "ERVL"; repLeft "1776"; repStart "-3175"; ### ERVLB4_11p15.5d ### chr11 rmsk gene 2324940 2326799 . + . gene_id "ERVLB4_11p15.5d"; transcript_id "ERVLB4_11p15.5d"; locus "ERVLB4_11p15.5d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1160"; model_cov "1565"; model_pct "27.4"; chr11 rmsk exon 2324940 2326034 7101 + . gene_id "ERVLB4_11p15.5d"; transcript_id "ERVLB4_11p15.5d"; locus "ERVLB4_11p15.5d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1160"; repClass "LTR"; repEnd "3303"; repFamily "ERVL"; repLeft "-2411"; repStart "2140"; chr11 rmsk exon 2326399 2326799 7101 + . gene_id "ERVLB4_11p15.5d"; transcript_id "ERVLB4_11p15.5d"; locus "ERVLB4_11p15.5d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1160"; repClass "LTR"; repEnd "3706"; repFamily "ERVL"; repLeft "-2008"; repStart "3304"; ### HERVIP10FH_11p15.5 ### chr11 rmsk gene 2335785 2342573 . + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; category "unknown"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0112"; model_cov "3082"; model_pct "60.4"; chr11 rmsk exon 2335785 2336242 2310 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "-43"; repStart "72"; chr11 rmsk exon 2336261 2337444 3207 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "-3990"; repStart "2"; chr11 rmsk exon 2337443 2337624 1061 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-4510"; repStart "411"; chr11 rmsk exon 2337605 2338513 3718 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "1713"; repFamily "ERV1"; repLeft "-3389"; repStart "1104"; chr11 rmsk exon 2338514 2338768 4201 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "254"; repFamily "ERV1"; repLeft "-337"; repStart "1"; chr11 rmsk exon 2339201 2339318 4201 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "365"; repFamily "ERV1"; repLeft "-226"; repStart "255"; chr11 rmsk exon 2339772 2339998 4201 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "366"; chr11 rmsk exon 2340000 2341044 4642 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "-2296"; repStart "1793"; chr11 rmsk exon 2341848 2341948 349 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "-164"; repStart "4838"; chr11 rmsk exon 2341952 2342018 251 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "5031"; chr11 rmsk exon 2342022 2342573 3301 + . gene_id "HERVIP10FH_11p15.5"; transcript_id "HERVIP10FH_11p15.5"; locus "HERVIP10FH_11p15.5"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0112"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_11p15.5e ### chr11 rmsk gene 2354004 2362091 . + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1161"; model_cov "5710"; model_pct "99.9"; chr11 rmsk exon 2354004 2354433 1635 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "-49"; repStart "83"; chr11 rmsk exon 2354736 2354784 1635 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "-7"; repStart "506"; chr11 rmsk exon 2354788 2356082 24559 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "1321"; repFamily "ERVL"; repLeft "-4393"; repStart "1"; chr11 rmsk exon 2356608 2358562 24559 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2377"; repStart "1322"; chr11 rmsk exon 2358852 2360707 24559 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "5131"; repFamily "ERVL"; repLeft "-583"; repStart "3338"; chr11 rmsk exon 2361019 2361595 24559 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5132"; chr11 rmsk exon 2361596 2362091 2350 + . gene_id "ERVLB4_11p15.5e"; transcript_id "ERVLB4_11p15.5e"; locus "ERVLB4_11p15.5e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1161"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "-48"; repStart "1"; ### MER4_11p15.4a ### chr11 rmsk gene 3110563 3118570 . + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0522"; model_cov "6436"; model_pct "97.5"; chr11 rmsk exon 3110563 3110996 3203 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0522"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 3111004 3113392 9145 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "2438"; repFamily "ERV1"; repLeft "-4160"; repStart "1"; chr11 rmsk exon 3113668 3113715 9145 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "2505"; repFamily "ERV1"; repLeft "-4093"; repStart "2439"; chr11 rmsk exon 3113953 3114591 9145 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "3417"; repFamily "ERV1"; repLeft "-3181"; repStart "2506"; chr11 rmsk exon 3114902 3115176 9145 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "3418"; chr11 rmsk exon 3115175 3116573 15487 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "5284"; repFamily "ERV1"; repLeft "-1314"; repStart "3836"; chr11 rmsk exon 3116876 3118164 15487 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0522"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5285"; chr11 rmsk exon 3118166 3118570 3224 + . gene_id "MER4_11p15.4a"; transcript_id "MER4_11p15.4a"; locus "MER4_11p15.4a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0522"; repClass "LTR"; repEnd "429"; repFamily "ERV1"; repLeft "-43"; repStart "1"; ### MER4B_11p15.4 ### chr11 rmsk gene 3237153 3246909 . - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0298"; model_cov "5270"; model_pct "78.0"; chr11 rmsk exon 3237153 3237748 2040 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; chr11 rmsk exon 3237749 3237976 1423 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr11 rmsk exon 3238045 3239144 6147 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "6333"; repFamily "ERV1"; repLeft "5237"; repStart "-425"; chr11 rmsk exon 3239455 3239484 912 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "5461"; repFamily "ERV1"; repLeft "5436"; repStart "-1297"; chr11 rmsk exon 3239483 3240087 3753 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "5253"; repFamily "ERV1"; repLeft "4648"; repStart "-1505"; chr11 rmsk exon 3240088 3240435 2428 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "280"; repStart "0"; chr11 rmsk exon 3240741 3240850 2428 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "279"; repFamily "ERV1"; repLeft "177"; repStart "-331"; chr11 rmsk exon 3241184 3242773 15315 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "4653"; repFamily "ERV1"; repLeft "3053"; repStart "-2105"; chr11 rmsk exon 3243253 3244293 15315 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "3052"; repFamily "ERV1"; repLeft "2032"; repStart "-3706"; chr11 rmsk exon 3244600 3245389 3256 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "1404"; repFamily "ERV1"; repLeft "750"; repStart "-5354"; chr11 rmsk exon 3245924 3245965 335 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "263"; repFamily "ERV1"; repLeft "222"; repStart "-6495"; chr11 rmsk exon 3246316 3246909 2320 - . gene_id "MER4B_11p15.4"; transcript_id "MER4B_11p15.4"; locus "MER4B_11p15.4"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0298"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "45"; repStart "0"; ### HERVFH21_11p15.4 ### chr11 rmsk gene 3352177 3358320 . - . gene_id "HERVFH21_11p15.4"; transcript_id "HERVFH21_11p15.4"; locus "HERVFH21_11p15.4"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0025"; model_cov "5331"; model_pct "81.7"; chr11 rmsk exon 3352177 3352614 3428 - . gene_id "HERVFH21_11p15.4"; transcript_id "HERVFH21_11p15.4"; locus "HERVFH21_11p15.4"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0025"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 3352615 3353236 1806 - . gene_id "HERVFH21_11p15.4"; transcript_id "HERVFH21_11p15.4"; locus "HERVFH21_11p15.4"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0025"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "5935"; repStart "0"; chr11 rmsk exon 3353238 3357886 22390 - . gene_id "HERVFH21_11p15.4"; transcript_id "HERVFH21_11p15.4"; locus "HERVFH21_11p15.4"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0025"; repClass "LTR"; repEnd "4738"; repFamily "ERV1"; repLeft "1"; repStart "-1791"; chr11 rmsk exon 3357888 3358320 3461 - . gene_id "HERVFH21_11p15.4"; transcript_id "HERVFH21_11p15.4"; locus "HERVFH21_11p15.4"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0025"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML2_11p15.4a ### chr11 rmsk gene 3447426 3456979 . - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0082"; model_cov "7535"; model_pct "100.0"; chr11 rmsk exon 3447426 3448449 8563 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 3448450 3455952 47463 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 3455953 3456979 8618 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_11p15.4a ### chr11 rmsk gene 3470257 3473528 . - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0837"; model_cov "1825"; model_pct "23.7"; chr11 rmsk exon 3470257 3470653 2558 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 3470654 3471031 2388 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 3471032 3471242 1335 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 3471244 3471309 4288 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5090"; repStart "-2564"; chr11 rmsk exon 3472376 3472976 4288 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "4489"; repStart "-2624"; chr11 rmsk exon 3472972 3473528 4108 - . gene_id "HERVH_11p15.4a"; transcript_id "HERVH_11p15.4a"; locus "HERVH_11p15.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0837"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3442"; repStart "-3713"; ### HERVE_11p15.4 ### chr11 rmsk gene 3473529 3481711 . - . gene_id "HERVE_11p15.4"; transcript_id "HERVE_11p15.4"; locus "HERVE_11p15.4"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0103"; model_cov "7691"; model_pct "98.4"; chr11 rmsk exon 3473529 3474025 3775 - . gene_id "HERVE_11p15.4"; transcript_id "HERVE_11p15.4"; locus "HERVE_11p15.4"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0103"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 3474026 3479237 41931 - . gene_id "HERVE_11p15.4"; transcript_id "HERVE_11p15.4"; locus "HERVE_11p15.4"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0103"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "2611"; repStart "-1"; chr11 rmsk exon 3479238 3481711 19726 - . gene_id "HERVE_11p15.4"; transcript_id "HERVE_11p15.4"; locus "HERVE_11p15.4"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0103"; repClass "LTR"; repEnd "2493"; repFamily "ERV1"; repLeft "3"; repStart "-5320"; ### HERVH_11p15.4b ### chr11 rmsk gene 3481712 3485187 . - . gene_id "HERVH_11p15.4b"; transcript_id "HERVH_11p15.4b"; locus "HERVH_11p15.4b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0838"; model_cov "3292"; model_pct "42.7"; chr11 rmsk exon 3481712 3482016 2105 - . gene_id "HERVH_11p15.4b"; transcript_id "HERVH_11p15.4b"; locus "HERVH_11p15.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0838"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "3140"; repStart "-4272"; chr11 rmsk exon 3482003 3484835 15936 - . gene_id "HERVH_11p15.4b"; transcript_id "HERVH_11p15.4b"; locus "HERVH_11p15.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0838"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr11 rmsk exon 3484838 3485187 2021 - . gene_id "HERVH_11p15.4b"; transcript_id "HERVH_11p15.4b"; locus "HERVH_11p15.4b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0838"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_11p15.4 ### chr11 rmsk gene 3509348 3516789 . - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0034"; model_cov "6463"; model_pct "72.0"; chr11 rmsk exon 3509348 3509899 4517 - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0034"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 3509900 3510216 2298 - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0034"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr11 rmsk exon 3510214 3513027 14139 - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0034"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr11 rmsk exon 3513037 3516232 22195 - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0034"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr11 rmsk exon 3516235 3516789 4111 - . gene_id "HERVS71_11p15.4"; transcript_id "HERVS71_11p15.4"; locus "HERVS71_11p15.4"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0034"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_11p15.4a ### chr11 rmsk gene 3582916 3583518 . + . gene_id "ERVLB4_11p15.4a"; transcript_id "ERVLB4_11p15.4a"; locus "ERVLB4_11p15.4a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1162"; model_cov "631"; model_pct "11.0"; chr11 rmsk exon 3582916 3583518 3000 + . gene_id "ERVLB4_11p15.4a"; transcript_id "ERVLB4_11p15.4a"; locus "ERVLB4_11p15.4a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1162"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVH_11p15.4c ### chr11 rmsk gene 3647949 3653636 . + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0839"; model_cov "4845"; model_pct "62.8"; chr11 rmsk exon 3647949 3648306 2464 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 3648309 3651480 20548 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr11 rmsk exon 3651480 3651986 3204 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "-3708"; repStart "3500"; chr11 rmsk exon 3651977 3652638 4312 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr11 rmsk exon 3652640 3653227 2178 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 3653228 3653636 2997 + . gene_id "HERVH_11p15.4c"; transcript_id "HERVH_11p15.4c"; locus "HERVH_11p15.4c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0839"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_11p15.4a ### chr11 rmsk gene 3920557 3921555 . + . gene_id "ERV316A3_11p15.4a"; transcript_id "ERV316A3_11p15.4a"; locus "ERV316A3_11p15.4a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1897"; model_cov "675"; model_pct "12.9"; chr11 rmsk exon 3920557 3920781 1951 + . gene_id "ERV316A3_11p15.4a"; transcript_id "ERV316A3_11p15.4a"; locus "ERV316A3_11p15.4a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1897"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "-3059"; repStart "1956"; chr11 rmsk exon 3921096 3921555 1951 + . gene_id "ERV316A3_11p15.4a"; transcript_id "ERV316A3_11p15.4a"; locus "ERV316A3_11p15.4a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1897"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "-2594"; repStart "2168"; ### ERVLB4_11p15.4b ### chr11 rmsk gene 4141300 4144989 . + . gene_id "ERVLB4_11p15.4b"; transcript_id "ERVLB4_11p15.4b"; locus "ERVLB4_11p15.4b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1163"; model_cov "3475"; model_pct "60.8"; chr11 rmsk exon 4141300 4142530 17996 + . gene_id "ERVLB4_11p15.4b"; transcript_id "ERVLB4_11p15.4b"; locus "ERVLB4_11p15.4b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1163"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "-4142"; repStart "248"; chr11 rmsk exon 4142827 4144989 17996 + . gene_id "ERVLB4_11p15.4b"; transcript_id "ERVLB4_11p15.4b"; locus "ERVLB4_11p15.4b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1163"; repClass "LTR"; repEnd "3724"; repFamily "ERVL"; repLeft "-1990"; repStart "1573"; ### HERVH_11p15.4d ### chr11 rmsk gene 4219299 4225317 . - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0840"; model_cov "4890"; model_pct "63.4"; chr11 rmsk exon 4219299 4219743 2899 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 4219744 4220113 2310 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 4220114 4220314 1416 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr11 rmsk exon 4220350 4220963 3133 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr11 rmsk exon 4220967 4221470 3486 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 4221461 4221610 947 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 4221605 4224868 9308 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr11 rmsk exon 4224872 4225317 2923 - . gene_id "HERVH_11p15.4d"; transcript_id "HERVH_11p15.4d"; locus "HERVH_11p15.4d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0840"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_11p15.4e ### chr11 rmsk gene 4315702 4321901 . - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0841"; model_cov "4862"; model_pct "63.0"; chr11 rmsk exon 4315702 4316146 2768 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 4316147 4316514 2057 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr11 rmsk exon 4316515 4316715 1245 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr11 rmsk exon 4317021 4317601 2888 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "5116"; repFamily "ERV1"; repLeft "4489"; repStart "-2597"; chr11 rmsk exon 4317597 4318108 3189 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr11 rmsk exon 4318099 4318248 889 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 4318243 4321450 8687 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr11 rmsk exon 4321456 4321901 2911 - . gene_id "HERVH_11p15.4e"; transcript_id "HERVH_11p15.4e"; locus "HERVH_11p15.4e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0841"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML2_11p15.4b ### chr11 rmsk gene 4459435 4461473 . - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0084"; model_cov "817"; model_pct "10.8"; chr11 rmsk exon 4459435 4459640 1531 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "789"; repStart "0"; chr11 rmsk exon 4459658 4459795 611 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "3010"; repFamily "ERVK"; repLeft "2888"; repStart "-4526"; chr11 rmsk exon 4459781 4460462 4101 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840"; chr11 rmsk exon 4460468 4461473 8224 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "4"; repStart "0"; ### HML4_11p15.4 ### chr11 rmsk gene 4492741 4497906 . - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0014"; model_cov "4101"; model_pct "50.5"; chr11 rmsk exon 4492741 4493736 6583 - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0014"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 4493737 4496029 10406 - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0014"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "5812"; repStart "0"; chr11 rmsk exon 4496024 4496988 3708 - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0014"; repClass "LTR"; repEnd "5643"; repFamily "ERVK"; repLeft "4569"; repStart "-2473"; chr11 rmsk exon 4497143 4497759 1176 - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0014"; repClass "LTR"; repEnd "1302"; repFamily "ERVK"; repLeft "714"; repStart "-6814"; chr11 rmsk exon 4497773 4497906 929 - . gene_id "HML4_11p15.4"; transcript_id "HML4_11p15.4"; locus "HML4_11p15.4"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0014"; repClass "LTR"; repEnd "209"; repFamily "ERVK"; repLeft "74"; repStart "-7907"; ### ERV316A3_11p15.4b ### chr11 rmsk gene 4550034 4550543 . + . gene_id "ERV316A3_11p15.4b"; transcript_id "ERV316A3_11p15.4b"; locus "ERV316A3_11p15.4b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1898"; model_cov "596"; model_pct "11.4"; chr11 rmsk exon 4550034 4550543 898 + . gene_id "ERV316A3_11p15.4b"; transcript_id "ERV316A3_11p15.4b"; locus "ERV316A3_11p15.4b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1898"; repClass "LTR"; repEnd "858"; repFamily "ERVL"; repLeft "-4368"; repStart "262"; ### HUERSP2_11p15.4 ### chr11 rmsk gene 4550544 4554796 . + . gene_id "HUERSP2_11p15.4"; transcript_id "HUERSP2_11p15.4"; locus "HUERSP2_11p15.4"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0079"; model_cov "3086"; model_pct "99.9"; chr11 rmsk exon 4550544 4550871 2129 + . gene_id "HUERSP2_11p15.4"; transcript_id "HUERSP2_11p15.4"; locus "HUERSP2_11p15.4"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0079"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-341"; repStart "139"; chr11 rmsk exon 4550869 4551078 1149 + . gene_id "HUERSP2_11p15.4"; transcript_id "HUERSP2_11p15.4"; locus "HUERSP2_11p15.4"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0079"; repClass "LTR"; repEnd "814"; repFamily "ERV1"; repLeft "-10"; repStart "600"; chr11 rmsk exon 4551081 4554007 13296 + . gene_id "HUERSP2_11p15.4"; transcript_id "HUERSP2_11p15.4"; locus "HUERSP2_11p15.4"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0079"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr11 rmsk exon 4554008 4554796 4759 + . gene_id "HUERSP2_11p15.4"; transcript_id "HUERSP2_11p15.4"; locus "HUERSP2_11p15.4"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0079"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11p15.4c ### chr11 rmsk gene 4554797 4558978 . + . gene_id "ERV316A3_11p15.4c"; transcript_id "ERV316A3_11p15.4c"; locus "ERV316A3_11p15.4c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1899"; model_cov "3769"; model_pct "72.1"; chr11 rmsk exon 4554797 4555690 1846 + . gene_id "ERV316A3_11p15.4c"; transcript_id "ERV316A3_11p15.4c"; locus "ERV316A3_11p15.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1899"; repClass "LTR"; repEnd "1978"; repFamily "ERVL"; repLeft "-3248"; repStart "1039"; chr11 rmsk exon 4555811 4558535 7155 + . gene_id "ERV316A3_11p15.4c"; transcript_id "ERV316A3_11p15.4c"; locus "ERV316A3_11p15.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1899"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "2388"; chr11 rmsk exon 4558543 4558978 931 + . gene_id "ERV316A3_11p15.4c"; transcript_id "ERV316A3_11p15.4c"; locus "ERV316A3_11p15.4c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1899"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_11p15.4d ### chr11 rmsk gene 4570758 4571487 . + . gene_id "ERV316A3_11p15.4d"; transcript_id "ERV316A3_11p15.4d"; locus "ERV316A3_11p15.4d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1900"; model_cov "757"; model_pct "14.5"; chr11 rmsk exon 4570758 4571487 1216 + . gene_id "ERV316A3_11p15.4d"; transcript_id "ERV316A3_11p15.4d"; locus "ERV316A3_11p15.4d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1900"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "-2760"; repStart "1709"; ### HUERSP3B_11p15.4 ### chr11 rmsk gene 4622329 4627200 . - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0088"; model_cov "4244"; model_pct "57.2"; chr11 rmsk exon 4622329 4622500 1114 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "440"; repStart "0"; chr11 rmsk exon 4622523 4623312 9908 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "5685"; repFamily "ERV1"; repLeft "4893"; repStart "-1733"; chr11 rmsk exon 4623620 4624780 9908 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "4892"; repFamily "ERV1"; repLeft "3073"; repStart "-2526"; chr11 rmsk exon 4625210 4625375 1410 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "2477"; repStart "-4776"; chr11 rmsk exon 4625373 4626429 3594 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "2024"; repFamily "ERV1"; repLeft "742"; repStart "-5394"; chr11 rmsk exon 4626464 4626662 961 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "347"; repStart "-6885"; chr11 rmsk exon 4626663 4627200 2687 - . gene_id "HUERSP3B_11p15.4"; transcript_id "HUERSP3B_11p15.4"; locus "HUERSP3B_11p15.4"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0088"; repClass "LTR"; repEnd "582"; repFamily "ERV1"; repLeft "1"; repStart "-30"; ### ERVLE_11p15.4a ### chr11 rmsk gene 4823031 4824954 . - . gene_id "ERVLE_11p15.4a"; transcript_id "ERVLE_11p15.4a"; locus "ERVLE_11p15.4a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2472"; model_cov "1664"; model_pct "29.4"; chr11 rmsk exon 4823031 4823277 477 - . gene_id "ERVLE_11p15.4a"; transcript_id "ERVLE_11p15.4a"; locus "ERVLE_11p15.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2472"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4171"; repStart "-1231"; chr11 rmsk exon 4823375 4823697 549 - . gene_id "ERVLE_11p15.4a"; transcript_id "ERVLE_11p15.4a"; locus "ERVLE_11p15.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2472"; repClass "LTR"; repEnd "3757"; repFamily "ERVL"; repLeft "3430"; repStart "-1910"; chr11 rmsk exon 4823755 4824210 345 - . gene_id "ERVLE_11p15.4a"; transcript_id "ERVLE_11p15.4a"; locus "ERVLE_11p15.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2472"; repClass "LTR"; repEnd "2109"; repFamily "ERVL"; repLeft "1663"; repStart "-3558"; chr11 rmsk exon 4824342 4824954 315 - . gene_id "ERVLE_11p15.4a"; transcript_id "ERVLE_11p15.4a"; locus "ERVLE_11p15.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2472"; repClass "LTR"; repEnd "1923"; repFamily "ERVL"; repLeft "1297"; repStart "-3744"; ### ERV316A3_11p15.4e ### chr11 rmsk gene 4898889 4902088 . - . gene_id "ERV316A3_11p15.4e"; transcript_id "ERV316A3_11p15.4e"; locus "ERV316A3_11p15.4e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1903"; model_cov "2441"; model_pct "46.7"; chr11 rmsk exon 4898889 4899211 823 - . gene_id "ERV316A3_11p15.4e"; transcript_id "ERV316A3_11p15.4e"; locus "ERV316A3_11p15.4e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1903"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "36"; repStart "-74"; chr11 rmsk exon 4899280 4901110 2603 - . gene_id "ERV316A3_11p15.4e"; transcript_id "ERV316A3_11p15.4e"; locus "ERV316A3_11p15.4e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1903"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "3405"; repStart "-46"; chr11 rmsk exon 4901527 4901879 666 - . gene_id "ERV316A3_11p15.4e"; transcript_id "ERV316A3_11p15.4e"; locus "ERV316A3_11p15.4e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1903"; repClass "LTR"; repEnd "2865"; repFamily "ERVL"; repLeft "2524"; repStart "-2361"; chr11 rmsk exon 4901908 4902088 370 - . gene_id "ERV316A3_11p15.4e"; transcript_id "ERV316A3_11p15.4e"; locus "ERV316A3_11p15.4e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1903"; repClass "LTR"; repEnd "2797"; repFamily "ERVL"; repLeft "2472"; repStart "-2429"; ### ERV316A3_11p15.4f ### chr11 rmsk gene 4977183 4978583 . - . gene_id "ERV316A3_11p15.4f"; transcript_id "ERV316A3_11p15.4f"; locus "ERV316A3_11p15.4f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1904"; model_cov "561"; model_pct "10.7"; chr11 rmsk exon 4977183 4977612 984 - . gene_id "ERV316A3_11p15.4f"; transcript_id "ERV316A3_11p15.4f"; locus "ERV316A3_11p15.4f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1904"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr11 rmsk exon 4977661 4977889 471 - . gene_id "ERV316A3_11p15.4f"; transcript_id "ERV316A3_11p15.4f"; locus "ERV316A3_11p15.4f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1904"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4894"; repStart "-50"; chr11 rmsk exon 4978269 4978397 385 - . gene_id "ERV316A3_11p15.4f"; transcript_id "ERV316A3_11p15.4f"; locus "ERV316A3_11p15.4f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1904"; repClass "LTR"; repEnd "4893"; repFamily "ERVL"; repLeft "4760"; repStart "-333"; chr11 rmsk exon 4978446 4978583 260 - . gene_id "ERV316A3_11p15.4f"; transcript_id "ERV316A3_11p15.4f"; locus "ERV316A3_11p15.4f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1904"; repClass "LTR"; repEnd "4425"; repFamily "ERVL"; repLeft "4279"; repStart "-801"; ### HERVH_11p15.4f ### chr11 rmsk gene 5160297 5166117 . - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0842"; model_cov "4900"; model_pct "63.5"; chr11 rmsk exon 5160297 5160707 2938 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 5160708 5161086 2455 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 5161085 5161301 1385 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 5161303 5161965 4367 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 5161968 5162469 3197 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr11 rmsk exon 5162469 5162618 939 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 5162613 5165703 15993 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr11 rmsk exon 5165706 5166117 2864 - . gene_id "HERVH_11p15.4f"; transcript_id "HERVH_11p15.4f"; locus "HERVH_11p15.4f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0842"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL74_11p15.4 ### chr11 rmsk gene 5497961 5499041 . + . gene_id "HERVL74_11p15.4"; transcript_id "HERVL74_11p15.4"; locus "HERVL74_11p15.4"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0070"; model_cov "1070"; model_pct "18.8"; chr11 rmsk exon 5497961 5498892 4180 + . gene_id "HERVL74_11p15.4"; transcript_id "HERVL74_11p15.4"; locus "HERVL74_11p15.4"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0070"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2348"; repStart "2428"; chr11 rmsk exon 5498878 5499041 912 + . gene_id "HERVL74_11p15.4"; transcript_id "HERVL74_11p15.4"; locus "HERVL74_11p15.4"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0070"; repClass "LTR"; repEnd "3640"; repFamily "ERVL"; repLeft "-2045"; repStart "3479"; ### ERVLB4_11p15.4c ### chr11 rmsk gene 5649261 5651245 . - . gene_id "ERVLB4_11p15.4c"; transcript_id "ERVLB4_11p15.4c"; locus "ERVLB4_11p15.4c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1164"; model_cov "2052"; model_pct "35.9"; chr11 rmsk exon 5649261 5650243 5087 - . gene_id "ERVLB4_11p15.4c"; transcript_id "ERVLB4_11p15.4c"; locus "ERVLB4_11p15.4c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1164"; repClass "LTR"; repEnd "5281"; repFamily "ERVL"; repLeft "4280"; repStart "-433"; chr11 rmsk exon 5650242 5651245 4261 - . gene_id "ERVLB4_11p15.4c"; transcript_id "ERVLB4_11p15.4c"; locus "ERVLB4_11p15.4c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1164"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "2834"; repStart "-1829"; ### ERV316A3_11p15.4g ### chr11 rmsk gene 5739689 5741904 . + . gene_id "ERV316A3_11p15.4g"; transcript_id "ERV316A3_11p15.4g"; locus "ERV316A3_11p15.4g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1906"; model_cov "1460"; model_pct "27.9"; chr11 rmsk exon 5739689 5740145 1634 + . gene_id "ERV316A3_11p15.4g"; transcript_id "ERV316A3_11p15.4g"; locus "ERV316A3_11p15.4g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1906"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "17"; chr11 rmsk exon 5740192 5740528 1938 + . gene_id "ERV316A3_11p15.4g"; transcript_id "ERV316A3_11p15.4g"; locus "ERV316A3_11p15.4g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1906"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-4788"; repStart "95"; chr11 rmsk exon 5740851 5741904 1938 + . gene_id "ERV316A3_11p15.4g"; transcript_id "ERV316A3_11p15.4g"; locus "ERV316A3_11p15.4g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1906"; repClass "LTR"; repEnd "1556"; repFamily "ERVL"; repLeft "-3670"; repStart "439"; ### HERVI_11p15.4 ### chr11 rmsk gene 5808038 5809640 . - . gene_id "HERVI_11p15.4"; transcript_id "HERVI_11p15.4"; locus "HERVI_11p15.4"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0023"; model_cov "996"; model_pct "12.8"; chr11 rmsk exon 5808038 5809113 2594 - . gene_id "HERVI_11p15.4"; transcript_id "HERVI_11p15.4"; locus "HERVI_11p15.4"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0023"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "3"; repStart "-6786"; chr11 rmsk exon 5809116 5809640 3484 - . gene_id "HERVI_11p15.4"; transcript_id "HERVI_11p15.4"; locus "HERVI_11p15.4"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0023"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFC2_11p15.4 ### chr11 rmsk gene 5928773 5933737 . + . gene_id "HERVFC2_11p15.4"; transcript_id "HERVFC2_11p15.4"; locus "HERVFC2_11p15.4"; category "internal"; intModel "HERV-Fc2-int"; locid "HERV-Fc2-int_0001"; model_cov "4677"; model_pct "64.5"; chr11 rmsk exon 5928773 5929601 6021 + . gene_id "HERVFC2_11p15.4"; transcript_id "HERVFC2_11p15.4"; locus "HERVFC2_11p15.4"; repName "HERV-Fc2-int"; geneRegion "internal"; locid "HERV-Fc2-int_0001"; repClass "LTR"; repEnd "3423"; repFamily "ERV1"; repLeft "-3827"; repStart "2622"; chr11 rmsk exon 5929745 5933737 7797 + . gene_id "HERVFC2_11p15.4"; transcript_id "HERVFC2_11p15.4"; locus "HERVFC2_11p15.4"; repName "HERV-Fc2-int"; geneRegion "internal"; locid "HERV-Fc2-int_0001"; repClass "LTR"; repEnd "4696"; repFamily "ERV1"; repLeft "-2554"; repStart "820"; ### HERVFC1_11p15.4 ### chr11 rmsk gene 5935248 5938354 . + . gene_id "HERVFC1_11p15.4"; transcript_id "HERVFC1_11p15.4"; locus "HERVFC1_11p15.4"; category "oneside"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0004"; model_cov "2685"; model_pct "58.0"; chr11 rmsk exon 5935248 5937929 22251 + . gene_id "HERVFC1_11p15.4"; transcript_id "HERVFC1_11p15.4"; locus "HERVFC1_11p15.4"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0004"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "0"; repStart "1944"; chr11 rmsk exon 5937930 5938354 3602 + . gene_id "HERVFC1_11p15.4"; transcript_id "HERVFC1_11p15.4"; locus "HERVFC1_11p15.4"; repName "HERV-Fc1_LTR2"; geneRegion "ltr"; locid "HERV-Fc1-int_0004"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP1_11p15.4a ### chr11 rmsk gene 6039059 6042072 . + . gene_id "HUERSP1_11p15.4a"; transcript_id "HUERSP1_11p15.4a"; locus "HUERSP1_11p15.4a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0123"; model_cov "2711"; model_pct "43.3"; chr11 rmsk exon 6039059 6039187 707 + . gene_id "HUERSP1_11p15.4a"; transcript_id "HUERSP1_11p15.4a"; locus "HUERSP1_11p15.4a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0123"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "567"; chr11 rmsk exon 6039188 6040495 15735 + . gene_id "HUERSP1_11p15.4a"; transcript_id "HUERSP1_11p15.4a"; locus "HUERSP1_11p15.4a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0123"; repClass "LTR"; repEnd "1242"; repFamily "ERV1"; repLeft "-5021"; repStart "1"; chr11 rmsk exon 6040544 6042072 15735 + . gene_id "HUERSP1_11p15.4a"; transcript_id "HUERSP1_11p15.4a"; locus "HUERSP1_11p15.4a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0123"; repClass "LTR"; repEnd "2713"; repFamily "ERV1"; repLeft "-3550"; repStart "1243"; ### HERVH_11p15.4g ### chr11 rmsk gene 6069822 6075884 . - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0843"; model_cov "5057"; model_pct "65.6"; chr11 rmsk exon 6069822 6070273 3476 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 6070274 6070648 2251 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chr11 rmsk exon 6070651 6070867 1343 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 6070869 6071530 4022 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 6071533 6072032 3053 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 6072023 6075431 18107 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr11 rmsk exon 6075434 6075884 3574 - . gene_id "HERVH_11p15.4g"; transcript_id "HERVH_11p15.4g"; locus "HERVH_11p15.4g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0843"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVK11_11p15.4 ### chr11 rmsk gene 6076055 6078769 . + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0066"; model_cov "1762"; model_pct "22.2"; chr11 rmsk exon 6076055 6077140 5395 + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0066"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 6077141 6077458 2218 + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0066"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "-7634"; repStart "1"; chr11 rmsk exon 6077456 6078050 2161 + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0066"; repClass "LTR"; repEnd "872"; repFamily "ERVK"; repLeft "-7081"; repStart "206"; chr11 rmsk exon 6078026 6078451 2932 + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0066"; repClass "LTR"; repEnd "1612"; repFamily "ERVK"; repLeft "-6341"; repStart "1165"; chr11 rmsk exon 6078438 6078769 2589 + . gene_id "HERVK11_11p15.4"; transcript_id "HERVK11_11p15.4"; locus "HERVK11_11p15.4"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0066"; repClass "LTR"; repEnd "3222"; repFamily "ERVK"; repLeft "-4731"; repStart "2891"; ### MER41_11p15.4a ### chr11 rmsk gene 6158349 6161309 . - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0355"; model_cov "2775"; model_pct "46.7"; chr11 rmsk exon 6158349 6158427 699 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0355"; repClass "LTR"; repEnd "1899"; repFamily "ERV1"; repLeft "1826"; repStart "-4047"; chr11 rmsk exon 6158732 6158847 699 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0355"; repClass "LTR"; repEnd "1825"; repFamily "ERV1"; repLeft "1745"; repStart "-4121"; chr11 rmsk exon 6158844 6158978 758 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0355"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1866"; repStart "-3929"; chr11 rmsk exon 6158978 6160571 5080 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0355"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-1590"; repStart "-5166"; chr11 rmsk exon 6160581 6160657 306 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0355"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr11 rmsk exon 6160742 6161309 4271 - . gene_id "MER41_11p15.4a"; transcript_id "MER41_11p15.4a"; locus "MER41_11p15.4a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0355"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_11p15.4b ### chr11 rmsk gene 6283647 6288759 . + . gene_id "MER41_11p15.4b"; transcript_id "MER41_11p15.4b"; locus "MER41_11p15.4b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0356"; model_cov "6005"; model_pct "100.0"; chr11 rmsk exon 6283647 6284169 3655 + . gene_id "MER41_11p15.4b"; transcript_id "MER41_11p15.4b"; locus "MER41_11p15.4b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0356"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 6284170 6285213 4966 + . gene_id "MER41_11p15.4b"; transcript_id "MER41_11p15.4b"; locus "MER41_11p15.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0356"; repClass "LTR"; repEnd "-110"; repFamily "ERV1"; repLeft "-6056"; repStart "-1590"; chr11 rmsk exon 6285251 6288201 12563 + . gene_id "MER41_11p15.4b"; transcript_id "MER41_11p15.4b"; locus "MER41_11p15.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0356"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "-4"; repStart "1417"; chr11 rmsk exon 6288204 6288759 4374 + . gene_id "MER41_11p15.4b"; transcript_id "MER41_11p15.4b"; locus "MER41_11p15.4b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0356"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11p15.4h ### chr11 rmsk gene 6366028 6371660 . + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0844"; model_cov "5122"; model_pct "66.4"; chr11 rmsk exon 6366028 6366431 2772 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-9"; repStart "1"; chr11 rmsk exon 6366442 6369224 15001 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 6369204 6370051 5635 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "-3713"; repStart "3140"; chr11 rmsk exon 6370047 6370657 3001 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4489"; chr11 rmsk exon 6370659 6370878 1526 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 6370879 6371249 2466 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr11 rmsk exon 6371250 6371660 2733 + . gene_id "HERVH_11p15.4h"; transcript_id "HERVH_11p15.4h"; locus "HERVH_11p15.4h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0844"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_11p15.4h ### chr11 rmsk gene 6380213 6381299 . + . gene_id "ERV316A3_11p15.4h"; transcript_id "ERV316A3_11p15.4h"; locus "ERV316A3_11p15.4h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1907"; model_cov "1042"; model_pct "19.9"; chr11 rmsk exon 6380213 6381235 2806 + . gene_id "ERV316A3_11p15.4h"; transcript_id "ERV316A3_11p15.4h"; locus "ERV316A3_11p15.4h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1907"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4182"; chr11 rmsk exon 6381238 6381299 366 + . gene_id "ERV316A3_11p15.4h"; transcript_id "ERV316A3_11p15.4h"; locus "ERV316A3_11p15.4h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1907"; repClass "LTR"; repEnd "63"; repFamily "ERVL"; repLeft "-388"; repStart "1"; ### HUERSP1_11p15.4b ### chr11 rmsk gene 6686696 6694293 . + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0124"; model_cov "6266"; model_pct "100.0"; chr11 rmsk exon 6686696 6686821 990 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "566"; chr11 rmsk exon 6686822 6688047 23481 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "1233"; repFamily "ERV1"; repLeft "-5030"; repStart "1"; chr11 rmsk exon 6688107 6689843 23481 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "2907"; repFamily "ERV1"; repLeft "-3356"; repStart "1234"; chr11 rmsk exon 6690144 6690615 23481 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-2625"; repStart "2908"; chr11 rmsk exon 6690957 6693104 23481 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "5806"; repFamily "ERV1"; repLeft "-457"; repStart "3639"; chr11 rmsk exon 6693239 6693700 3021 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5799"; chr11 rmsk exon 6693701 6694293 4245 + . gene_id "HUERSP1_11p15.4b"; transcript_id "HUERSP1_11p15.4b"; locus "HUERSP1_11p15.4b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0124"; repClass "LTR"; repEnd "586"; repFamily "ERV1"; repLeft "-105"; repStart "1"; ### PABLA_11p15.4 ### chr11 rmsk gene 6852960 6855713 . + . gene_id "PABLA_11p15.4"; transcript_id "PABLA_11p15.4"; locus "PABLA_11p15.4"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0098"; model_cov "1771"; model_pct "35.3"; chr11 rmsk exon 6852960 6853429 9638 + . gene_id "PABLA_11p15.4"; transcript_id "PABLA_11p15.4"; locus "PABLA_11p15.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0098"; repClass "LTR"; repEnd "3746"; repFamily "ERV1"; repLeft "-1269"; repStart "3243"; chr11 rmsk exon 6853543 6854721 9638 + . gene_id "PABLA_11p15.4"; transcript_id "PABLA_11p15.4"; locus "PABLA_11p15.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0098"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "3747"; chr11 rmsk exon 6854722 6854980 4562 + . gene_id "PABLA_11p15.4"; transcript_id "PABLA_11p15.4"; locus "PABLA_11p15.4"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0098"; repClass "LTR"; repEnd "264"; repFamily "ERV1"; repLeft "-396"; repStart "1"; chr11 rmsk exon 6855312 6855713 4562 + . gene_id "PABLA_11p15.4"; transcript_id "PABLA_11p15.4"; locus "PABLA_11p15.4"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0098"; repClass "LTR"; repEnd "658"; repFamily "ERV1"; repLeft "-2"; repStart "265"; ### ERVLE_11p15.4b ### chr11 rmsk gene 6960741 6961511 . - . gene_id "ERVLE_11p15.4b"; transcript_id "ERVLE_11p15.4b"; locus "ERVLE_11p15.4b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2475"; model_cov "819"; model_pct "14.5"; chr11 rmsk exon 6960741 6961511 483 - . gene_id "ERVLE_11p15.4b"; transcript_id "ERVLE_11p15.4b"; locus "ERVLE_11p15.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2475"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "568"; repStart "-4280"; ### HERVL40_11p15.4 ### chr11 rmsk gene 7063177 7064689 . - . gene_id "HERVL40_11p15.4"; transcript_id "HERVL40_11p15.4"; locus "HERVL40_11p15.4"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0292"; model_cov "1117"; model_pct "20.2"; chr11 rmsk exon 7063177 7063595 1504 - . gene_id "HERVL40_11p15.4"; transcript_id "HERVL40_11p15.4"; locus "HERVL40_11p15.4"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0292"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr11 rmsk exon 7063600 7064689 3928 - . gene_id "HERVL40_11p15.4"; transcript_id "HERVL40_11p15.4"; locus "HERVL40_11p15.4"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0292"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "4413"; repStart "0"; ### HERVH48_11p15.4 ### chr11 rmsk gene 7516499 7520474 . - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0035"; model_cov "3209"; model_pct "48.2"; chr11 rmsk exon 7516499 7516906 3104 - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0035"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 7516907 7517214 2258 - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0035"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6337"; repStart "0"; chr11 rmsk exon 7517215 7517312 609 - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0035"; repClass "LTR"; repEnd "4413"; repFamily "ERV1"; repLeft "4316"; repStart "-2241"; chr11 rmsk exon 7517310 7520066 19061 - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0035"; repClass "LTR"; repEnd "2796"; repFamily "ERV1"; repLeft "1"; repStart "-3858"; chr11 rmsk exon 7520067 7520474 2960 - . gene_id "HERVH48_11p15.4"; transcript_id "HERVH48_11p15.4"; locus "HERVH48_11p15.4"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0035"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR57_11p15.4 ### chr11 rmsk gene 7775454 7776386 . + . gene_id "LTR57_11p15.4"; transcript_id "LTR57_11p15.4"; locus "LTR57_11p15.4"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0123"; model_cov "846"; model_pct "15.8"; chr11 rmsk exon 7775454 7776316 5090 + . gene_id "LTR57_11p15.4"; transcript_id "LTR57_11p15.4"; locus "LTR57_11p15.4"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0123"; repClass "LTR"; repEnd "5341"; repFamily "ERVL"; repLeft "-2"; repStart "4495"; chr11 rmsk exon 7776319 7776386 380 + . gene_id "LTR57_11p15.4"; transcript_id "LTR57_11p15.4"; locus "LTR57_11p15.4"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0123"; repClass "LTR"; repEnd "71"; repFamily "ERVL"; repLeft "-340"; repStart "1"; ### PRIMAX_11p15.4 ### chr11 rmsk gene 7878076 7878511 . - . gene_id "PRIMAX_11p15.4"; transcript_id "PRIMAX_11p15.4"; locus "PRIMAX_11p15.4"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0019"; model_cov "439"; model_pct "10.7"; chr11 rmsk exon 7878076 7878511 572 - . gene_id "PRIMAX_11p15.4"; transcript_id "PRIMAX_11p15.4"; locus "PRIMAX_11p15.4"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0019"; repClass "LTR"; repEnd "3078"; repFamily "ERV1"; repLeft "2639"; repStart "-1024"; ### HML6_11p15.4 ### chr11 rmsk gene 7899325 7906232 . - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0053"; model_cov "5398"; model_pct "75.0"; chr11 rmsk exon 7899325 7899773 2734 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "456"; repFamily "ERVK"; repLeft "1"; repStart "-28"; chr11 rmsk exon 7899774 7899867 653 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "7109"; repStart "0"; chr11 rmsk exon 7899893 7900232 31774 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "5308"; repFamily "ERVK"; repLeft "4968"; repStart "-1894"; chr11 rmsk exon 7900529 7901263 31774 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "4967"; repFamily "ERVK"; repLeft "4273"; repStart "-2235"; chr11 rmsk exon 7901510 7905722 31774 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "4272"; repFamily "ERVK"; repLeft "1"; repStart "-2930"; chr11 rmsk exon 7905761 7906232 3131 - . gene_id "HML6_11p15.4"; transcript_id "HML6_11p15.4"; locus "HML6_11p15.4"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0053"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_11p15.4i ### chr11 rmsk gene 7912151 7917907 . - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0845"; model_cov "5059"; model_pct "65.6"; chr11 rmsk exon 7912151 7912601 3475 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 7912602 7912974 2411 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 7912975 7913192 1325 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 7913194 7913855 4151 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 7913858 7914358 3084 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 7914349 7917465 18691 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr11 rmsk exon 7917468 7917907 3268 - . gene_id "HERVH_11p15.4i"; transcript_id "HERVH_11p15.4i"; locus "HERVH_11p15.4i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0845"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_11p15.4b ### chr11 rmsk gene 7968458 7971241 . - . gene_id "MER4_11p15.4b"; transcript_id "MER4_11p15.4b"; locus "MER4_11p15.4b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0523"; model_cov "1475"; model_pct "22.4"; chr11 rmsk exon 7968458 7969071 3550 - . gene_id "MER4_11p15.4b"; transcript_id "MER4_11p15.4b"; locus "MER4_11p15.4b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0523"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 7969080 7969981 8223 - . gene_id "MER4_11p15.4b"; transcript_id "MER4_11p15.4b"; locus "MER4_11p15.4b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0523"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5696"; repStart "-2"; chr11 rmsk exon 7970684 7971241 8223 - . gene_id "MER4_11p15.4b"; transcript_id "MER4_11p15.4b"; locus "MER4_11p15.4b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0523"; repClass "LTR"; repEnd "5695"; repFamily "ERV1"; repLeft "5120"; repStart "-903"; ### ERV316A3_11p15.4i ### chr11 rmsk gene 8008168 8011854 . - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1908"; model_cov "1960"; model_pct "37.5"; chr11 rmsk exon 8008168 8008373 441 - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1908"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "166"; repStart "-108"; chr11 rmsk exon 8008792 8009505 2337 - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1908"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "4226"; repStart "-272"; chr11 rmsk exon 8009806 8011137 2337 - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1908"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "2993"; repStart "-1001"; chr11 rmsk exon 8011238 8011309 1060 - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1908"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "421"; repStart "-2"; chr11 rmsk exon 8011529 8011854 1060 - . gene_id "ERV316A3_11p15.4i"; transcript_id "ERV316A3_11p15.4i"; locus "ERV316A3_11p15.4i"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1908"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "104"; repStart "-75"; ### ERV316A3_11p15.4j ### chr11 rmsk gene 9131718 9134494 . + . gene_id "ERV316A3_11p15.4j"; transcript_id "ERV316A3_11p15.4j"; locus "ERV316A3_11p15.4j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1910"; model_cov "2374"; model_pct "45.4"; chr11 rmsk exon 9131718 9132288 2139 + . gene_id "ERV316A3_11p15.4j"; transcript_id "ERV316A3_11p15.4j"; locus "ERV316A3_11p15.4j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1910"; repClass "LTR"; repEnd "3262"; repFamily "ERVL"; repLeft "-1964"; repStart "2683"; chr11 rmsk exon 9132290 9134057 7423 + . gene_id "ERV316A3_11p15.4j"; transcript_id "ERV316A3_11p15.4j"; locus "ERV316A3_11p15.4j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1910"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3431"; chr11 rmsk exon 9134058 9134494 1311 + . gene_id "ERV316A3_11p15.4j"; transcript_id "ERV316A3_11p15.4j"; locus "ERV316A3_11p15.4j"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1910"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVW_11p15.4 ### chr11 rmsk gene 9347806 9349617 . - . gene_id "HERVW_11p15.4"; transcript_id "HERVW_11p15.4"; locus "HERVW_11p15.4"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0209"; model_cov "1487"; model_pct "17.2"; chr11 rmsk exon 9347806 9348130 2650 - . gene_id "HERVW_11p15.4"; transcript_id "HERVW_11p15.4"; locus "HERVW_11p15.4"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0209"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr11 rmsk exon 9348134 9349617 12811 - . gene_id "HERVW_11p15.4"; transcript_id "HERVW_11p15.4"; locus "HERVW_11p15.4"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0209"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "7136"; repStart "-3"; ### ERV316A3_11p15.4k ### chr11 rmsk gene 9769072 9770372 . + . gene_id "ERV316A3_11p15.4k"; transcript_id "ERV316A3_11p15.4k"; locus "ERV316A3_11p15.4k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1911"; model_cov "853"; model_pct "16.3"; chr11 rmsk exon 9769072 9769180 495 + . gene_id "ERV316A3_11p15.4k"; transcript_id "ERV316A3_11p15.4k"; locus "ERV316A3_11p15.4k"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1911"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-64"; repStart "289"; chr11 rmsk exon 9769513 9769803 1271 + . gene_id "ERV316A3_11p15.4k"; transcript_id "ERV316A3_11p15.4k"; locus "ERV316A3_11p15.4k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1911"; repClass "LTR"; repEnd "4301"; repFamily "ERVL"; repLeft "-925"; repStart "4018"; chr11 rmsk exon 9769800 9770372 2089 + . gene_id "ERV316A3_11p15.4k"; transcript_id "ERV316A3_11p15.4k"; locus "ERV316A3_11p15.4k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1911"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4656"; ### HERVFRD_11p15.4 ### chr11 rmsk gene 10004952 10009081 . + . gene_id "HERVFRD_11p15.4"; transcript_id "HERVFRD_11p15.4"; locus "HERVFRD_11p15.4"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0128"; model_cov "3361"; model_pct "46.6"; chr11 rmsk exon 10004952 10005674 4374 + . gene_id "HERVFRD_11p15.4"; transcript_id "HERVFRD_11p15.4"; locus "HERVFRD_11p15.4"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0128"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr11 rmsk exon 10005711 10009081 13196 + . gene_id "HERVFRD_11p15.4"; transcript_id "HERVFRD_11p15.4"; locus "HERVFRD_11p15.4"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0128"; repClass "LTR"; repEnd "3362"; repFamily "ERV1"; repLeft "-3843"; repStart "1"; ### HUERSP1_11p15.4c ### chr11 rmsk gene 10100175 10103791 . + . gene_id "HUERSP1_11p15.4c"; transcript_id "HUERSP1_11p15.4c"; locus "HUERSP1_11p15.4c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0125"; model_cov "4115"; model_pct "65.7"; chr11 rmsk exon 10100175 10100322 969 + . gene_id "HUERSP1_11p15.4c"; transcript_id "HUERSP1_11p15.4c"; locus "HUERSP1_11p15.4c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0125"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "544"; chr11 rmsk exon 10100323 10101659 10158 + . gene_id "HUERSP1_11p15.4c"; transcript_id "HUERSP1_11p15.4c"; locus "HUERSP1_11p15.4c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0125"; repClass "LTR"; repEnd "1241"; repFamily "ERV1"; repLeft "-5022"; repStart "1"; chr11 rmsk exon 10101693 10102050 10158 + . gene_id "HUERSP1_11p15.4c"; transcript_id "HUERSP1_11p15.4c"; locus "HUERSP1_11p15.4c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0125"; repClass "LTR"; repEnd "1603"; repFamily "ERV1"; repLeft "-4660"; repStart "1242"; chr11 rmsk exon 10102038 10103791 10133 + . gene_id "HUERSP1_11p15.4c"; transcript_id "HUERSP1_11p15.4c"; locus "HUERSP1_11p15.4c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0125"; repClass "LTR"; repEnd "4740"; repFamily "ERV1"; repLeft "-1523"; repStart "2226"; ### ERVLE_11p15.4c ### chr11 rmsk gene 10211295 10214007 . - . gene_id "ERVLE_11p15.4c"; transcript_id "ERVLE_11p15.4c"; locus "ERVLE_11p15.4c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2478"; model_cov "2109"; model_pct "37.2"; chr11 rmsk exon 10211295 10212723 2106 - . gene_id "ERVLE_11p15.4c"; transcript_id "ERVLE_11p15.4c"; locus "ERVLE_11p15.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2478"; repClass "LTR"; repEnd "3007"; repFamily "ERVL"; repLeft "1535"; repStart "-2660"; chr11 rmsk exon 10213311 10213673 884 - . gene_id "ERVLE_11p15.4c"; transcript_id "ERVLE_11p15.4c"; locus "ERVLE_11p15.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2478"; repClass "LTR"; repEnd "1132"; repFamily "ERVL"; repLeft "754"; repStart "-4535"; chr11 rmsk exon 10213749 10214007 252 - . gene_id "ERVLE_11p15.4c"; transcript_id "ERVLE_11p15.4c"; locus "ERVLE_11p15.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2478"; repClass "LTR"; repEnd "619"; repFamily "ERVL"; repLeft "360"; repStart "-5048"; ### ERVLE_11p15.4d ### chr11 rmsk gene 10348234 10349609 . + . gene_id "ERVLE_11p15.4d"; transcript_id "ERVLE_11p15.4d"; locus "ERVLE_11p15.4d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2479"; model_cov "1479"; model_pct "26.1"; chr11 rmsk exon 10348234 10349609 5840 + . gene_id "ERVLE_11p15.4d"; transcript_id "ERVLE_11p15.4d"; locus "ERVLE_11p15.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2479"; repClass "LTR"; repEnd "4975"; repFamily "ERVL"; repLeft "-692"; repStart "3496"; ### ERVLE_11p15.4e ### chr11 rmsk gene 10833562 10839237 . + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2480"; model_cov "1656"; model_pct "29.2"; chr11 rmsk exon 10833562 10833611 265 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "215"; repFamily "ERVL"; repLeft "-5452"; repStart "166"; chr11 rmsk exon 10834237 10834682 624 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "693"; repFamily "ERVL"; repLeft "-4974"; repStart "199"; chr11 rmsk exon 10836265 10836352 268 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "1017"; repFamily "ERVL"; repLeft "-4650"; repStart "930"; chr11 rmsk exon 10837568 10837716 316 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "-4282"; repStart "1233"; chr11 rmsk exon 10837750 10838100 657 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "1753"; repFamily "ERVL"; repLeft "-3914"; repStart "1371"; chr11 rmsk exon 10838122 10838253 385 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "1930"; repFamily "ERVL"; repLeft "-3737"; repStart "1786"; chr11 rmsk exon 10838253 10838351 409 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "4568"; repFamily "ERVL"; repLeft "-1099"; repStart "4462"; chr11 rmsk exon 10839008 10839237 419 + . gene_id "ERVLE_11p15.4e"; transcript_id "ERVLE_11p15.4e"; locus "ERVLE_11p15.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2480"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-796"; repStart "4629"; ### ERVLE_11p15.4f ### chr11 rmsk gene 10879797 10881141 . + . gene_id "ERVLE_11p15.4f"; transcript_id "ERVLE_11p15.4f"; locus "ERVLE_11p15.4f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2481"; model_cov "824"; model_pct "14.5"; chr11 rmsk exon 10879797 10879901 271 + . gene_id "ERVLE_11p15.4f"; transcript_id "ERVLE_11p15.4f"; locus "ERVLE_11p15.4f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2481"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "-5099"; repStart "460"; chr11 rmsk exon 10880421 10881141 1266 + . gene_id "ERVLE_11p15.4f"; transcript_id "ERVLE_11p15.4f"; locus "ERVLE_11p15.4f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2481"; repClass "LTR"; repEnd "1381"; repFamily "ERVL"; repLeft "-4286"; repStart "665"; ### ERV316A3_11p15.3 ### chr11 rmsk gene 12947378 12949058 . - . gene_id "ERV316A3_11p15.3"; transcript_id "ERV316A3_11p15.3"; locus "ERV316A3_11p15.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1912"; model_cov "1067"; model_pct "20.4"; chr11 rmsk exon 12947378 12947573 290 - . gene_id "ERV316A3_11p15.3"; transcript_id "ERV316A3_11p15.3"; locus "ERV316A3_11p15.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1912"; repClass "LTR"; repEnd "1808"; repFamily "ERVL"; repLeft "1609"; repStart "-3418"; chr11 rmsk exon 12947907 12948734 1001 - . gene_id "ERV316A3_11p15.3"; transcript_id "ERV316A3_11p15.3"; locus "ERV316A3_11p15.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1912"; repClass "LTR"; repEnd "1260"; repFamily "ERVL"; repLeft "392"; repStart "-3966"; chr11 rmsk exon 12948983 12949058 430 - . gene_id "ERV316A3_11p15.3"; transcript_id "ERV316A3_11p15.3"; locus "ERV316A3_11p15.3"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1912"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "342"; repStart "0"; ### ERVLE_11p15.3 ### chr11 rmsk gene 12984121 12985872 . + . gene_id "ERVLE_11p15.3"; transcript_id "ERVLE_11p15.3"; locus "ERVLE_11p15.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2482"; model_cov "1241"; model_pct "21.9"; chr11 rmsk exon 12984121 12985098 2937 + . gene_id "ERVLE_11p15.3"; transcript_id "ERVLE_11p15.3"; locus "ERVLE_11p15.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2482"; repClass "LTR"; repEnd "5407"; repFamily "ERVL"; repLeft "-260"; repStart "4357"; chr11 rmsk exon 12985678 12985872 277 + . gene_id "ERVLE_11p15.3"; transcript_id "ERVLE_11p15.3"; locus "ERVLE_11p15.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2482"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5476"; ### MER4B_11p15.3 ### chr11 rmsk gene 13646039 13651190 . - . gene_id "MER4B_11p15.3"; transcript_id "MER4B_11p15.3"; locus "MER4B_11p15.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0300"; model_cov "2373"; model_pct "35.1"; chr11 rmsk exon 13646039 13646450 1164 - . gene_id "MER4B_11p15.3"; transcript_id "MER4B_11p15.3"; locus "MER4B_11p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0300"; repClass "LTR"; repEnd "6075"; repFamily "ERV1"; repLeft "5713"; repStart "-683"; chr11 rmsk exon 13646811 13647149 5938 - . gene_id "MER4B_11p15.3"; transcript_id "MER4B_11p15.3"; locus "MER4B_11p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0300"; repClass "LTR"; repEnd "5249"; repFamily "ERV1"; repLeft "4224"; repStart "-1509"; chr11 rmsk exon 13648180 13648554 5938 - . gene_id "MER4B_11p15.3"; transcript_id "MER4B_11p15.3"; locus "MER4B_11p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0300"; repClass "LTR"; repEnd "4223"; repFamily "ERV1"; repLeft "3866"; repStart "-2535"; chr11 rmsk exon 13650645 13651190 1294 - . gene_id "MER4B_11p15.3"; transcript_id "MER4B_11p15.3"; locus "MER4B_11p15.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0300"; repClass "LTR"; repEnd "2936"; repFamily "ERV1"; repLeft "2307"; repStart "-3822"; ### HUERSP1_11p15.2a ### chr11 rmsk gene 14164602 14168499 . - . gene_id "HUERSP1_11p15.2a"; transcript_id "HUERSP1_11p15.2a"; locus "HUERSP1_11p15.2a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0126"; model_cov "2866"; model_pct "45.8"; chr11 rmsk exon 14164602 14165279 5231 - . gene_id "HUERSP1_11p15.2a"; transcript_id "HUERSP1_11p15.2a"; locus "HUERSP1_11p15.2a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0126"; repClass "LTR"; repEnd "689"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 14165280 14168499 19066 - . gene_id "HUERSP1_11p15.2a"; transcript_id "HUERSP1_11p15.2a"; locus "HUERSP1_11p15.2a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0126"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "3397"; repStart "0"; ### HUERSP1_11p15.2b ### chr11 rmsk gene 14173965 14177906 . - . gene_id "HUERSP1_11p15.2b"; transcript_id "HUERSP1_11p15.2b"; locus "HUERSP1_11p15.2b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0127"; model_cov "2924"; model_pct "46.7"; chr11 rmsk exon 14173965 14176863 21456 - . gene_id "HUERSP1_11p15.2b"; transcript_id "HUERSP1_11p15.2b"; locus "HUERSP1_11p15.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0127"; repClass "LTR"; repEnd "2925"; repFamily "ERV1"; repLeft "1"; repStart "-3338"; chr11 rmsk exon 14176864 14177029 5619 - . gene_id "HUERSP1_11p15.2b"; transcript_id "HUERSP1_11p15.2b"; locus "HUERSP1_11p15.2b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0127"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "531"; repStart "0"; chr11 rmsk exon 14177340 14177906 5619 - . gene_id "HUERSP1_11p15.2b"; transcript_id "HUERSP1_11p15.2b"; locus "HUERSP1_11p15.2b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0127"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "2"; repStart "-161"; ### HERVH_11p15.2 ### chr11 rmsk gene 14524261 14529062 . + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0846"; model_cov "3939"; model_pct "51.1"; chr11 rmsk exon 14524261 14524693 3223 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 14524694 14524836 651 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "-7566"; repStart "1"; chr11 rmsk exon 14524834 14527810 12932 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "-2798"; repStart "1945"; chr11 rmsk exon 14527808 14528073 1395 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5749"; chr11 rmsk exon 14528067 14528628 3248 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr11 rmsk exon 14528630 14529062 3225 + . gene_id "HERVH_11p15.2"; transcript_id "HERVH_11p15.2"; locus "HERVH_11p15.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0846"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_11p15.2a ### chr11 rmsk gene 14560218 14560892 . - . gene_id "ERVLE_11p15.2a"; transcript_id "ERVLE_11p15.2a"; locus "ERVLE_11p15.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2483"; model_cov "1012"; model_pct "17.9"; chr11 rmsk exon 14560218 14560451 630 - . gene_id "ERVLE_11p15.2a"; transcript_id "ERVLE_11p15.2a"; locus "ERVLE_11p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2483"; repClass "LTR"; repEnd "5631"; repFamily "ERVL"; repLeft "5228"; repStart "-36"; chr11 rmsk exon 14560449 14560892 814 - . gene_id "ERVLE_11p15.2a"; transcript_id "ERVLE_11p15.2a"; locus "ERVLE_11p15.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2483"; repClass "LTR"; repEnd "5382"; repFamily "ERVL"; repLeft "4773"; repStart "-285"; ### ERV316A3_11p15.2a ### chr11 rmsk gene 14622139 14625891 . + . gene_id "ERV316A3_11p15.2a"; transcript_id "ERV316A3_11p15.2a"; locus "ERV316A3_11p15.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1913"; model_cov "2934"; model_pct "56.1"; chr11 rmsk exon 14622139 14624235 7489 + . gene_id "ERV316A3_11p15.2a"; transcript_id "ERV316A3_11p15.2a"; locus "ERV316A3_11p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1913"; repClass "LTR"; repEnd "4462"; repFamily "ERVL"; repLeft "-764"; repStart "2281"; chr11 rmsk exon 14624403 14625138 3065 + . gene_id "ERV316A3_11p15.2a"; transcript_id "ERV316A3_11p15.2a"; locus "ERV316A3_11p15.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1913"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4473"; chr11 rmsk exon 14625463 14625891 1923 + . gene_id "ERV316A3_11p15.2a"; transcript_id "ERV316A3_11p15.2a"; locus "ERV316A3_11p15.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1913"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "21"; ### ERVLE_11p15.2b ### chr11 rmsk gene 14837735 14841560 . + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_2484"; model_cov "3215"; model_pct "56.7"; chr11 rmsk exon 14837735 14837960 1378 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-5263"; repStart "182"; chr11 rmsk exon 14838279 14838792 1378 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-4704"; repStart "405"; chr11 rmsk exon 14838801 14839054 377 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "1296"; repFamily "ERVL"; repLeft "-4371"; repStart "1029"; chr11 rmsk exon 14839058 14840958 5399 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "3932"; repFamily "ERVL"; repLeft "-1735"; repStart "1903"; chr11 rmsk exon 14840959 14841317 1945 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-57"; repStart "1"; chr11 rmsk exon 14841349 14841420 355 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-1"; repStart "350"; chr11 rmsk exon 14841422 14841560 418 + . gene_id "ERVLE_11p15.2b"; transcript_id "ERVLE_11p15.2b"; locus "ERVLE_11p15.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2484"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "-1604"; repStart "3924"; ### HUERSP1_11p15.2c ### chr11 rmsk gene 15011625 15014622 . - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0128"; model_cov "1543"; model_pct "24.6"; chr11 rmsk exon 15011625 15012321 2977 - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0128"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 15012322 15012594 1294 - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0128"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5968"; repStart "0"; chr11 rmsk exon 15012861 15013348 2386 - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0128"; repClass "LTR"; repEnd "5747"; repFamily "ERV1"; repLeft "5266"; repStart "-516"; chr11 rmsk exon 15013519 15013713 3746 - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0128"; repClass "LTR"; repEnd "5633"; repFamily "ERV1"; repLeft "5425"; repStart "-630"; chr11 rmsk exon 15014011 15014622 3746 - . gene_id "HUERSP1_11p15.2c"; transcript_id "HUERSP1_11p15.2c"; locus "HUERSP1_11p15.2c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0128"; repClass "LTR"; repEnd "5424"; repFamily "ERV1"; repLeft "4865"; repStart "-839"; ### HUERSP1_11p15.2d ### chr11 rmsk gene 15023913 15027589 . - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0129"; model_cov "2646"; model_pct "42.2"; chr11 rmsk exon 15023913 15024141 953 - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0129"; repClass "LTR"; repEnd "183"; repFamily "ERV1"; repLeft "-18"; repStart "-6080"; chr11 rmsk exon 15024143 15024747 11898 - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0129"; repClass "LTR"; repEnd "2450"; repFamily "ERV1"; repLeft "1932"; repStart "-3813"; chr11 rmsk exon 15024857 15025598 11898 - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0129"; repClass "LTR"; repEnd "1931"; repFamily "ERV1"; repLeft "1227"; repStart "-4332"; chr11 rmsk exon 15025634 15026858 11898 - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0129"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "3"; repStart "-5037"; chr11 rmsk exon 15026860 15027589 3452 - . gene_id "HUERSP1_11p15.2d"; transcript_id "HUERSP1_11p15.2d"; locus "HUERSP1_11p15.2d"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0129"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_11p15.2b ### chr11 rmsk gene 15029452 15031131 . + . gene_id "ERV316A3_11p15.2b"; transcript_id "ERV316A3_11p15.2b"; locus "ERV316A3_11p15.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1915"; model_cov "690"; model_pct "13.2"; chr11 rmsk exon 15029452 15030024 1449 + . gene_id "ERV316A3_11p15.2b"; transcript_id "ERV316A3_11p15.2b"; locus "ERV316A3_11p15.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1915"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "-129"; repStart "4534"; chr11 rmsk exon 15030435 15030565 1449 + . gene_id "ERV316A3_11p15.2b"; transcript_id "ERV316A3_11p15.2b"; locus "ERV316A3_11p15.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1915"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "5098"; chr11 rmsk exon 15030566 15030938 628 + . gene_id "ERV316A3_11p15.2b"; transcript_id "ERV316A3_11p15.2b"; locus "ERV316A3_11p15.2b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1915"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "-69"; repStart "-5"; chr11 rmsk exon 15031071 15031131 594 + . gene_id "ERV316A3_11p15.2b"; transcript_id "ERV316A3_11p15.2b"; locus "ERV316A3_11p15.2b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1915"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "-3"; repStart "421"; ### HERVK11_11p15.2 ### chr11 rmsk gene 15062959 15070542 . - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0068"; model_cov "5383"; model_pct "67.7"; chr11 rmsk exon 15062959 15064024 6951 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 15064025 15065027 8374 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6954"; repStart "0"; chr11 rmsk exon 15065007 15066211 9400 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "5467"; repStart "-1186"; chr11 rmsk exon 15066203 15067890 13691 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "2912"; repStart "-3352"; chr11 rmsk exon 15067885 15068460 3099 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "1165"; repStart "-6368"; chr11 rmsk exon 15068459 15069456 5036 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "976"; repFamily "ERVK"; repLeft "1"; repStart "-6977"; chr11 rmsk exon 15069457 15070542 7251 - . gene_id "HERVK11_11p15.2"; transcript_id "HERVK11_11p15.2"; locus "HERVK11_11p15.2"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0068"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_11p15.2 ### chr11 rmsk gene 16720947 16721616 . + . gene_id "MER41_11p15.2"; transcript_id "MER41_11p15.2"; locus "MER41_11p15.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0357"; model_cov "637"; model_pct "10.7"; chr11 rmsk exon 16720947 16721616 3909 + . gene_id "MER41_11p15.2"; transcript_id "MER41_11p15.2"; locus "MER41_11p15.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0357"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "-5308"; repStart "1"; ### HUERSP3_11p15.1 ### chr11 rmsk gene 17370374 17378687 . + . gene_id "HUERSP3_11p15.1"; transcript_id "HUERSP3_11p15.1"; locus "HUERSP3_11p15.1"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0137"; model_cov "7891"; model_pct "88.5"; chr11 rmsk exon 17370374 17376380 30298 + . gene_id "HUERSP3_11p15.1"; transcript_id "HUERSP3_11p15.1"; locus "HUERSP3_11p15.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0137"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "-3007"; repStart "1"; chr11 rmsk exon 17376382 17377196 14668 + . gene_id "HUERSP3_11p15.1"; transcript_id "HUERSP3_11p15.1"; locus "HUERSP3_11p15.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0137"; repClass "LTR"; repEnd "7752"; repFamily "ERV1"; repLeft "-1167"; repStart "6938"; chr11 rmsk exon 17377511 17378687 14668 + . gene_id "HUERSP3_11p15.1"; transcript_id "HUERSP3_11p15.1"; locus "HUERSP3_11p15.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0137"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "7753"; ### HERVH_11p15.1a ### chr11 rmsk gene 18643254 18649474 . + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0847"; model_cov "5258"; model_pct "68.2"; chr11 rmsk exon 18643254 18643683 3379 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 18643684 18644149 2745 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr11 rmsk exon 18644204 18646461 14154 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr11 rmsk exon 18646441 18648231 11166 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "-2798"; repStart "3140"; chr11 rmsk exon 18648229 18648490 1427 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5749"; chr11 rmsk exon 18648484 18649043 3753 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr11 rmsk exon 18649044 18649474 3446 + . gene_id "HERVH_11p15.1a"; transcript_id "HERVH_11p15.1a"; locus "HERVH_11p15.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0847"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_11p15.1a ### chr11 rmsk gene 18682537 18692143 . + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0358"; model_cov "6347"; model_pct "100.0"; chr11 rmsk exon 18682537 18682986 4052 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0358"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "191"; chr11 rmsk exon 18682987 18683704 3564 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "-143"; repFamily "ERV1"; repLeft "-6089"; repStart "-1367"; chr11 rmsk exon 18683906 18686689 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "-2367"; repStart "817"; chr11 rmsk exon 18686988 18687131 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "3704"; repFamily "ERV1"; repLeft "-2242"; repStart "3580"; chr11 rmsk exon 18687740 18688469 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "4407"; repFamily "ERV1"; repLeft "-1539"; repStart "3705"; chr11 rmsk exon 18688781 18689592 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "5192"; repFamily "ERV1"; repLeft "-754"; repStart "4408"; chr11 rmsk exon 18689906 18690064 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "5360"; repFamily "ERV1"; repLeft "-586"; repStart "5193"; chr11 rmsk exon 18690366 18690495 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "5479"; repFamily "ERV1"; repLeft "-467"; repStart "5361"; chr11 rmsk exon 18690803 18691276 29779 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0358"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5480"; chr11 rmsk exon 18691622 18692143 3273 + . gene_id "MER41_11p15.1a"; transcript_id "MER41_11p15.1a"; locus "MER41_11p15.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0358"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "-113"; repStart "17"; ### HML1_11p15.1a ### chr11 rmsk gene 18817735 18822111 . - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0077"; model_cov "1670"; model_pct "27.4"; chr11 rmsk exon 18817735 18818097 1993 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr11 rmsk exon 18818086 18818132 267 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; chr11 rmsk exon 18818136 18818255 786 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr11 rmsk exon 18818318 18818498 1509 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5716"; repStart "-199"; chr11 rmsk exon 18818501 18818956 2029 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "5036"; repStart "-495"; chr11 rmsk exon 18820947 18821715 5606 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "1"; repStart "-5307"; chr11 rmsk exon 18821716 18822076 2006 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr11 rmsk exon 18822065 18822111 267 - . gene_id "HML1_11p15.1a"; transcript_id "HML1_11p15.1a"; locus "HML1_11p15.1a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0077"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; ### HERVW_11p15.1 ### chr11 rmsk gene 18818957 18820915 . - . gene_id "HERVW_11p15.1"; transcript_id "HERVW_11p15.1"; locus "HERVW_11p15.1"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0211"; model_cov "1851"; model_pct "21.5"; chr11 rmsk exon 18818957 18819005 351 - . gene_id "HERVW_11p15.1"; transcript_id "HERVW_11p15.1"; locus "HERVW_11p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0211"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "433"; repStart "-8145"; chr11 rmsk exon 18819005 18819596 3798 - . gene_id "HERVW_11p15.1"; transcript_id "HERVW_11p15.1"; locus "HERVW_11p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0211"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "3282"; repStart "-4872"; chr11 rmsk exon 18819596 18819748 1296 - . gene_id "HERVW_11p15.1"; transcript_id "HERVW_11p15.1"; locus "HERVW_11p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0211"; repClass "LTR"; repEnd "2582"; repFamily "ERV1"; repLeft "2430"; repStart "-6044"; chr11 rmsk exon 18819732 18820915 8803 - . gene_id "HERVW_11p15.1"; transcript_id "HERVW_11p15.1"; locus "HERVW_11p15.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0211"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "837"; repStart "-6610"; ### HML1_11p15.1b ### chr11 rmsk gene 18982403 18984554 . + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0078"; model_cov "2023"; model_pct "33.2"; chr11 rmsk exon 18982403 18982611 270 + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0078"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-6970"; repStart "-1091"; chr11 rmsk exon 18982676 18982764 265 + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0078"; repClass "LTR"; repEnd "-480"; repFamily "ERVK"; repLeft "-6576"; repStart "-561"; chr11 rmsk exon 18982769 18983700 3909 + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0078"; repClass "LTR"; repEnd "1161"; repFamily "ERVK"; repLeft "-4935"; repStart "174"; chr11 rmsk exon 18983702 18984439 4596 + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0078"; repClass "LTR"; repEnd "5899"; repFamily "ERVK"; repLeft "-197"; repStart "5202"; chr11 rmsk exon 18984513 18984554 370 + . gene_id "HML1_11p15.1b"; transcript_id "HML1_11p15.1b"; locus "HML1_11p15.1b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0078"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5973"; ### MER41_11p15.1b ### chr11 rmsk gene 20200499 20207270 . + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0359"; model_cov "5879"; model_pct "98.9"; chr11 rmsk exon 20200499 20201051 4616 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0359"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 20201136 20201212 314 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0359"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-5844"; repStart "1"; chr11 rmsk exon 20201222 20202175 5490 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0359"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "-4854"; repStart "1"; chr11 rmsk exon 20202209 20202852 3778 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0359"; repClass "LTR"; repEnd "1789"; repFamily "ERV1"; repLeft "-4157"; repStart "1093"; chr11 rmsk exon 20202827 20206228 12340 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0359"; repClass "LTR"; repEnd "5772"; repFamily "ERV1"; repLeft "-174"; repStart "1952"; chr11 rmsk exon 20206542 20206714 12340 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0359"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5773"; chr11 rmsk exon 20206715 20207270 4222 + . gene_id "MER41_11p15.1b"; transcript_id "MER41_11p15.1b"; locus "MER41_11p15.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0359"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_11p15.1a ### chr11 rmsk gene 20339920 20342371 . + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0200"; model_cov "1384"; model_pct "25.8"; chr11 rmsk exon 20339920 20340270 1084 + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0200"; repClass "LTR"; repEnd "362"; repFamily "ERV1"; repLeft "-180"; repStart "4"; chr11 rmsk exon 20340584 20340751 1084 + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0200"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "363"; chr11 rmsk exon 20340779 20341457 2021 + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0200"; repClass "LTR"; repEnd "673"; repFamily "ERV1"; repLeft "-4683"; repStart "44"; chr11 rmsk exon 20341519 20342102 2702 + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0200"; repClass "LTR"; repEnd "933"; repFamily "ERV1"; repLeft "-4423"; repStart "292"; chr11 rmsk exon 20342223 20342371 2702 + . gene_id "MER34B_11p15.1a"; transcript_id "MER34B_11p15.1a"; locus "MER34B_11p15.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0200"; repClass "LTR"; repEnd "1348"; repFamily "ERV1"; repLeft "-4008"; repStart "1234"; ### MER34B_11p15.1b ### chr11 rmsk gene 20348776 20349916 . + . gene_id "MER34B_11p15.1b"; transcript_id "MER34B_11p15.1b"; locus "MER34B_11p15.1b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0201"; model_cov "1108"; model_pct "20.7"; chr11 rmsk exon 20348776 20349916 2708 + . gene_id "MER34B_11p15.1b"; transcript_id "MER34B_11p15.1b"; locus "MER34B_11p15.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0201"; repClass "LTR"; repEnd "2399"; repFamily "ERV1"; repLeft "-2957"; repStart "1291"; ### HERVH_11p15.1b ### chr11 rmsk gene 20567875 20572655 . + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0848"; model_cov "4034"; model_pct "52.3"; chr11 rmsk exon 20567875 20568314 3767 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 20568316 20571208 16959 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2"; chr11 rmsk exon 20571188 20571337 992 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 20571328 20571767 3079 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "3928"; repFamily "ERV1"; repLeft "-3785"; repStart "3492"; chr11 rmsk exon 20571774 20571836 422 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5753"; chr11 rmsk exon 20571837 20572214 2463 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr11 rmsk exon 20572215 20572655 3811 + . gene_id "HERVH_11p15.1b"; transcript_id "HERVH_11p15.1b"; locus "HERVH_11p15.1b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0848"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_11p15.1a ### chr11 rmsk gene 20856922 20859241 . + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0104"; model_cov "1814"; model_pct "30.0"; chr11 rmsk exon 20856922 20857105 934 + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0104"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-426"; repStart "1"; chr11 rmsk exon 20857118 20857397 1283 + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0104"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "330"; chr11 rmsk exon 20857404 20857691 1515 + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0104"; repClass "LTR"; repEnd "292"; repFamily "ERVL"; repLeft "-5755"; repStart "1"; chr11 rmsk exon 20857716 20858568 5048 + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0104"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-2471"; repStart "2720"; chr11 rmsk exon 20858574 20859241 4313 + . gene_id "HERVL18_11p15.1a"; transcript_id "HERVL18_11p15.1a"; locus "HERVL18_11p15.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0104"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "-986"; repStart "4394"; ### ERV316A3_11p15.1 ### chr11 rmsk gene 21683299 21684284 . - . gene_id "ERV316A3_11p15.1"; transcript_id "ERV316A3_11p15.1"; locus "ERV316A3_11p15.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1916"; model_cov "644"; model_pct "12.3"; chr11 rmsk exon 21683299 21683685 484 - . gene_id "ERV316A3_11p15.1"; transcript_id "ERV316A3_11p15.1"; locus "ERV316A3_11p15.1"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1916"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr11 rmsk exon 21683687 21684284 1897 - . gene_id "ERV316A3_11p15.1"; transcript_id "ERV316A3_11p15.1"; locus "ERV316A3_11p15.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1916"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4581"; repStart "-1"; ### HERVL18_11p15.1b ### chr11 rmsk gene 21810797 21814752 . + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0105"; model_cov "2583"; model_pct "42.7"; chr11 rmsk exon 21810797 21810997 796 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "181"; repFamily "ERVL"; repLeft "-176"; repStart "1"; chr11 rmsk exon 21811000 21811285 547 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-6"; repStart "-30"; chr11 rmsk exon 21811291 21811555 1334 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "-5743"; repStart "8"; chr11 rmsk exon 21811541 21811655 597 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "-5469"; repStart "463"; chr11 rmsk exon 21811738 21812206 2978 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "1793"; repFamily "ERVL"; repLeft "-4254"; repStart "1324"; chr11 rmsk exon 21812551 21813962 6331 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2119"; chr11 rmsk exon 21813965 21814207 1603 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "4637"; repFamily "ERVL"; repLeft "-1410"; repStart "4394"; chr11 rmsk exon 21814268 21814489 758 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "-117"; repStart "1"; chr11 rmsk exon 21814542 21814752 579 + . gene_id "HERVL18_11p15.1b"; transcript_id "HERVL18_11p15.1b"; locus "HERVL18_11p15.1b"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0105"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "-7"; repStart "114"; ### MER101_11p14.3 ### chr11 rmsk gene 22089620 22095780 . - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; category "prototype"; intModel "MER101-int"; locid "MER101-int_0267"; model_cov "3202"; model_pct "48.2"; chr11 rmsk exon 22089620 22090095 2487 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0267"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 22090097 22090251 593 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "6637"; repFamily "ERV1"; repLeft "6479"; repStart "-2"; chr11 rmsk exon 22090267 22090672 1636 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "6439"; repFamily "ERV1"; repLeft "6005"; repStart "-200"; chr11 rmsk exon 22090684 22091535 2312 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "3606"; repStart "-2023"; chr11 rmsk exon 22092348 22092817 4418 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "3741"; repFamily "ERV1"; repLeft "3280"; repStart "-2898"; chr11 rmsk exon 22093122 22093186 4418 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "3279"; repFamily "ERV1"; repLeft "3249"; repStart "-3360"; chr11 rmsk exon 22093436 22093924 4418 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "3248"; repFamily "ERV1"; repLeft "2751"; repStart "-3391"; chr11 rmsk exon 22094049 22094154 2067 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "2668"; repStart "-3873"; chr11 rmsk exon 22094457 22094841 2067 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "2667"; repFamily "ERV1"; repLeft "2262"; repStart "-3972"; chr11 rmsk exon 22094967 22095087 350 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0267"; repClass "LTR"; repEnd "2131"; repFamily "ERV1"; repLeft "2022"; repStart "-4508"; chr11 rmsk exon 22095349 22095780 2368 - . gene_id "MER101_11p14.3"; transcript_id "MER101_11p14.3"; locus "MER101_11p14.3"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0267"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_11p14.3a ### chr11 rmsk gene 22312819 22318319 . - . gene_id "HERVW_11p14.3a"; transcript_id "HERVW_11p14.3a"; locus "HERVW_11p14.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0212"; model_cov "4166"; model_pct "48.3"; chr11 rmsk exon 22312819 22313722 7320 - . gene_id "HERVW_11p14.3a"; transcript_id "HERVW_11p14.3a"; locus "HERVW_11p14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0212"; repClass "LTR"; repEnd "7807"; repFamily "ERV1"; repLeft "6902"; repStart "-819"; chr11 rmsk exon 22313714 22316128 20302 - . gene_id "HERVW_11p14.3a"; transcript_id "HERVW_11p14.3a"; locus "HERVW_11p14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0212"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "2647"; repStart "-3559"; chr11 rmsk exon 22316753 22317577 6092 - . gene_id "HERVW_11p14.3a"; transcript_id "HERVW_11p14.3a"; locus "HERVW_11p14.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0212"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "1"; repStart "-7784"; chr11 rmsk exon 22317578 22318319 5451 - . gene_id "HERVW_11p14.3a"; transcript_id "HERVW_11p14.3a"; locus "HERVW_11p14.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0212"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11p14.3a ### chr11 rmsk gene 22691971 22693876 . - . gene_id "ERVLE_11p14.3a"; transcript_id "ERVLE_11p14.3a"; locus "ERVLE_11p14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2486"; model_cov "971"; model_pct "17.1"; chr11 rmsk exon 22691971 22692283 581 - . gene_id "ERVLE_11p14.3a"; transcript_id "ERVLE_11p14.3a"; locus "ERVLE_11p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2486"; repClass "LTR"; repEnd "3701"; repFamily "ERVL"; repLeft "3392"; repStart "-1966"; chr11 rmsk exon 22692755 22692907 581 - . gene_id "ERVLE_11p14.3a"; transcript_id "ERVLE_11p14.3a"; locus "ERVLE_11p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2486"; repClass "LTR"; repEnd "3391"; repFamily "ERVL"; repLeft "3236"; repStart "-2276"; chr11 rmsk exon 22692918 22693363 808 - . gene_id "ERVLE_11p14.3a"; transcript_id "ERVLE_11p14.3a"; locus "ERVLE_11p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2486"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "2396"; repStart "-2814"; chr11 rmsk exon 22693826 22693876 311 - . gene_id "ERVLE_11p14.3a"; transcript_id "ERVLE_11p14.3a"; locus "ERVLE_11p14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2486"; repClass "LTR"; repEnd "1740"; repFamily "ERVL"; repLeft "1690"; repStart "-3927"; ### MER4_11p14.3 ### chr11 rmsk gene 22834929 22836573 . + . gene_id "MER4_11p14.3"; transcript_id "MER4_11p14.3"; locus "MER4_11p14.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0525"; model_cov "1412"; model_pct "21.4"; chr11 rmsk exon 22834929 22835280 2368 + . gene_id "MER4_11p14.3"; transcript_id "MER4_11p14.3"; locus "MER4_11p14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0525"; repClass "LTR"; repEnd "192"; repFamily "ERV1"; repLeft "-6406"; repStart "-159"; chr11 rmsk exon 22835291 22835331 1948 + . gene_id "MER4_11p14.3"; transcript_id "MER4_11p14.3"; locus "MER4_11p14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0525"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "-6023"; repStart "554"; chr11 rmsk exon 22835628 22836013 1948 + . gene_id "MER4_11p14.3"; transcript_id "MER4_11p14.3"; locus "MER4_11p14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0525"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-5560"; repStart "576"; chr11 rmsk exon 22836029 22836573 2476 + . gene_id "MER4_11p14.3"; transcript_id "MER4_11p14.3"; locus "MER4_11p14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0525"; repClass "LTR"; repEnd "2344"; repFamily "ERV1"; repLeft "-4254"; repStart "1766"; ### MER4B_11p14.3a ### chr11 rmsk gene 22836568 22838970 . + . gene_id "MER4B_11p14.3a"; transcript_id "MER4B_11p14.3a"; locus "MER4B_11p14.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0303"; model_cov "2446"; model_pct "36.2"; chr11 rmsk exon 22836568 22836873 1734 + . gene_id "MER4B_11p14.3a"; transcript_id "MER4B_11p14.3a"; locus "MER4B_11p14.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0303"; repClass "LTR"; repEnd "4087"; repFamily "ERV1"; repLeft "-2671"; repStart "3767"; chr11 rmsk exon 22836875 22838643 9704 + . gene_id "MER4B_11p14.3a"; transcript_id "MER4B_11p14.3a"; locus "MER4B_11p14.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0303"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "-445"; repStart "4453"; chr11 rmsk exon 22838697 22838970 1572 + . gene_id "MER4B_11p14.3a"; transcript_id "MER4B_11p14.3a"; locus "MER4B_11p14.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0303"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "-111"; repStart "6381"; ### HERVIP10F_11p14.3 ### chr11 rmsk gene 22992671 23000729 . - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0071"; model_cov "6776"; model_pct "87.6"; chr11 rmsk exon 22992671 22993119 1734 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 22993120 22995562 9977 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5268"; repStart "0"; chr11 rmsk exon 22995564 22995620 275 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "5281"; repFamily "ERV1"; repLeft "5225"; repStart "-2456"; chr11 rmsk exon 22995617 22996476 4379 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "4074"; repStart "-2799"; chr11 rmsk exon 22996522 22998399 9673 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "4087"; repFamily "ERV1"; repLeft "2199"; repStart "-3650"; chr11 rmsk exon 22998398 22999974 4548 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "1945"; repFamily "ERV1"; repLeft "446"; repStart "-5792"; chr11 rmsk exon 23000279 23000729 1853 - . gene_id "HERVIP10F_11p14.3"; transcript_id "HERVIP10F_11p14.3"; locus "HERVIP10F_11p14.3"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0071"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLB_11p14.3 ### chr11 rmsk gene 23016438 23020166 . - . gene_id "PABLB_11p14.3"; transcript_id "PABLB_11p14.3"; locus "PABLB_11p14.3"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0067"; model_cov "3564"; model_pct "50.0"; chr11 rmsk exon 23016438 23016564 294 - . gene_id "PABLB_11p14.3"; transcript_id "PABLB_11p14.3"; locus "PABLB_11p14.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0067"; repClass "LTR"; repEnd "7121"; repFamily "ERV1"; repLeft "6989"; repStart "-1"; chr11 rmsk exon 23017126 23019256 946 - . gene_id "PABLB_11p14.3"; transcript_id "PABLB_11p14.3"; locus "PABLB_11p14.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0067"; repClass "LTR"; repEnd "5501"; repFamily "ERV1"; repLeft "2689"; repStart "-1621"; chr11 rmsk exon 23019554 23020166 946 - . gene_id "PABLB_11p14.3"; transcript_id "PABLB_11p14.3"; locus "PABLB_11p14.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0067"; repClass "LTR"; repEnd "3322"; repFamily "ERV1"; repLeft "2702"; repStart "-3800"; ### ERVL_11p14.3 ### chr11 rmsk gene 23103460 23105364 . + . gene_id "ERVL_11p14.3"; transcript_id "ERVL_11p14.3"; locus "ERVL_11p14.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0302"; model_cov "1317"; model_pct "22.9"; chr11 rmsk exon 23103460 23104287 2750 + . gene_id "ERVL_11p14.3"; transcript_id "ERVL_11p14.3"; locus "ERVL_11p14.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0302"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-534"; repStart "4360"; chr11 rmsk exon 23104636 23104906 1487 + . gene_id "ERVL_11p14.3"; transcript_id "ERVL_11p14.3"; locus "ERVL_11p14.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0302"; repClass "LTR"; repEnd "5576"; repFamily "ERVL"; repLeft "-181"; repStart "5296"; chr11 rmsk exon 23105201 23105364 1487 + . gene_id "ERVL_11p14.3"; transcript_id "ERVL_11p14.3"; locus "ERVL_11p14.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0302"; repClass "LTR"; repEnd "5751"; repFamily "ERVL"; repLeft "-6"; repStart "5577"; ### HERVH_11p14.3a ### chr11 rmsk gene 23183934 23189744 . - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0849"; model_cov "4919"; model_pct "63.8"; chr11 rmsk exon 23183934 23184385 3353 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 23184386 23184764 2413 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 23184763 23184983 1311 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr11 rmsk exon 23184981 23185630 4198 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 23185633 23186134 3415 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 23186125 23186272 916 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 23186252 23189290 19448 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 23189293 23189744 3354 - . gene_id "HERVH_11p14.3a"; transcript_id "HERVH_11p14.3a"; locus "HERVH_11p14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0849"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_11p14.3a ### chr11 rmsk gene 23253188 23253713 . - . gene_id "ERV316A3_11p14.3a"; transcript_id "ERV316A3_11p14.3a"; locus "ERV316A3_11p14.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1917"; model_cov "524"; model_pct "10.0"; chr11 rmsk exon 23253188 23253618 1276 - . gene_id "ERV316A3_11p14.3a"; transcript_id "ERV316A3_11p14.3a"; locus "ERV316A3_11p14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1917"; repClass "LTR"; repEnd "1163"; repFamily "ERVL"; repLeft "725"; repStart "-4063"; chr11 rmsk exon 23253637 23253713 301 - . gene_id "ERV316A3_11p14.3a"; transcript_id "ERV316A3_11p14.3a"; locus "ERV316A3_11p14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1917"; repClass "LTR"; repEnd "939"; repFamily "ERVL"; repLeft "853"; repStart "-4287"; ### PABLA_11p14.3 ### chr11 rmsk gene 23766860 23771404 . - . gene_id "PABLA_11p14.3"; transcript_id "PABLA_11p14.3"; locus "PABLA_11p14.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0099"; model_cov "5943"; model_pct "100.0"; chr11 rmsk exon 23766860 23771404 13276 - . gene_id "PABLA_11p14.3"; transcript_id "PABLA_11p14.3"; locus "PABLA_11p14.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0099"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "-930"; repStart "-2"; ### HERVH_11p14.3b ### chr11 rmsk gene 23887264 23892921 . - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0850"; model_cov "4920"; model_pct "63.8"; chr11 rmsk exon 23887264 23887632 2389 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 23887633 23888009 2460 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 23888010 23888230 1331 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 23888232 23888880 4277 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 23888883 23889386 3341 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 23889377 23889546 917 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr11 rmsk exon 23889519 23892523 20336 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr11 rmsk exon 23892526 23892921 2558 - . gene_id "HERVH_11p14.3b"; transcript_id "HERVH_11p14.3b"; locus "HERVH_11p14.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0850"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_11p14.3b ### chr11 rmsk gene 24085149 24086950 . + . gene_id "ERV316A3_11p14.3b"; transcript_id "ERV316A3_11p14.3b"; locus "ERV316A3_11p14.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1919"; model_cov "1241"; model_pct "23.7"; chr11 rmsk exon 24085149 24086385 1994 + . gene_id "ERV316A3_11p14.3b"; transcript_id "ERV316A3_11p14.3b"; locus "ERV316A3_11p14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1919"; repClass "LTR"; repEnd "5143"; repFamily "ERVL"; repLeft "-83"; repStart "3902"; chr11 rmsk exon 24086474 24086950 606 + . gene_id "ERV316A3_11p14.3b"; transcript_id "ERV316A3_11p14.3b"; locus "ERV316A3_11p14.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1919"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "15"; ### HML1_11p14.3 ### chr11 rmsk gene 24228505 24230070 . + . gene_id "HML1_11p14.3"; transcript_id "HML1_11p14.3"; locus "HML1_11p14.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0079"; model_cov "1140"; model_pct "18.7"; chr11 rmsk exon 24228505 24228626 826 + . gene_id "HML1_11p14.3"; transcript_id "HML1_11p14.3"; locus "HML1_11p14.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0079"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "-1698"; repStart "4270"; chr11 rmsk exon 24228620 24229283 2011 + . gene_id "HML1_11p14.3"; transcript_id "HML1_11p14.3"; locus "HML1_11p14.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0079"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5007"; chr11 rmsk exon 24229360 24229480 767 + . gene_id "HML1_11p14.3"; transcript_id "HML1_11p14.3"; locus "HML1_11p14.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0079"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5974"; chr11 rmsk exon 24229484 24230070 4299 + . gene_id "HML1_11p14.3"; transcript_id "HML1_11p14.3"; locus "HML1_11p14.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0079"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_11p14.3c ### chr11 rmsk gene 24238039 24240680 . - . gene_id "ERV316A3_11p14.3c"; transcript_id "ERV316A3_11p14.3c"; locus "ERV316A3_11p14.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1920"; model_cov "1553"; model_pct "29.7"; chr11 rmsk exon 24238039 24238456 1203 - . gene_id "ERV316A3_11p14.3c"; transcript_id "ERV316A3_11p14.3c"; locus "ERV316A3_11p14.3c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1920"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "5"; repStart "-13"; chr11 rmsk exon 24238464 24238631 317 - . gene_id "ERV316A3_11p14.3c"; transcript_id "ERV316A3_11p14.3c"; locus "ERV316A3_11p14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1920"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "5047"; repStart "-4"; chr11 rmsk exon 24238628 24239966 1485 - . gene_id "ERV316A3_11p14.3c"; transcript_id "ERV316A3_11p14.3c"; locus "ERV316A3_11p14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1920"; repClass "LTR"; repEnd "1676"; repFamily "ERVL"; repLeft "298"; repStart "-3550"; chr11 rmsk exon 24240232 24240680 1529 - . gene_id "ERV316A3_11p14.3c"; transcript_id "ERV316A3_11p14.3c"; locus "ERV316A3_11p14.3c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1920"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "1"; repStart "-4"; ### ERV316A3_11p14.3d ### chr11 rmsk gene 24345209 24346052 . + . gene_id "ERV316A3_11p14.3d"; transcript_id "ERV316A3_11p14.3d"; locus "ERV316A3_11p14.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1921"; model_cov "867"; model_pct "16.6"; chr11 rmsk exon 24345209 24346052 2010 + . gene_id "ERV316A3_11p14.3d"; transcript_id "ERV316A3_11p14.3d"; locus "ERV316A3_11p14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1921"; repClass "LTR"; repEnd "4628"; repFamily "ERVL"; repLeft "-598"; repStart "3761"; ### MER4B_11p14.3b ### chr11 rmsk gene 24754301 24756560 . - . gene_id "MER4B_11p14.3b"; transcript_id "MER4B_11p14.3b"; locus "MER4B_11p14.3b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0304"; model_cov "1126"; model_pct "16.7"; chr11 rmsk exon 24754301 24754863 5270 - . gene_id "MER4B_11p14.3b"; transcript_id "MER4B_11p14.3b"; locus "MER4B_11p14.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0304"; repClass "LTR"; repEnd "4212"; repFamily "ERV1"; repLeft "3633"; repStart "-2546"; chr11 rmsk exon 24755164 24755552 5270 - . gene_id "MER4B_11p14.3b"; transcript_id "MER4B_11p14.3b"; locus "MER4B_11p14.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0304"; repClass "LTR"; repEnd "3632"; repFamily "ERV1"; repLeft "3262"; repStart "-3126"; chr11 rmsk exon 24756404 24756560 5270 - . gene_id "MER4B_11p14.3b"; transcript_id "MER4B_11p14.3b"; locus "MER4B_11p14.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0304"; repClass "LTR"; repEnd "3261"; repFamily "ERV1"; repLeft "3084"; repStart "-3497"; ### ERVLE_11p14.3b ### chr11 rmsk gene 25120306 25123264 . - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2487"; model_cov "2594"; model_pct "45.8"; chr11 rmsk exon 25120306 25121463 3412 - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2487"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "2215"; repStart "-2240"; chr11 rmsk exon 25121505 25122364 1933 - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2487"; repClass "LTR"; repEnd "2134"; repFamily "ERVL"; repLeft "1104"; repStart "-3533"; chr11 rmsk exon 25122725 25122773 931 - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2487"; repClass "LTR"; repEnd "1193"; repFamily "ERVL"; repLeft "1146"; repStart "-4474"; chr11 rmsk exon 25122972 25123186 571 - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2487"; repClass "LTR"; repEnd "1147"; repFamily "ERVL"; repLeft "924"; repStart "-4520"; chr11 rmsk exon 25123183 25123264 339 - . gene_id "ERVLE_11p14.3b"; transcript_id "ERVLE_11p14.3b"; locus "ERVLE_11p14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2487"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "14"; repStart "-5571"; ### ERV316A3_11p14.3e ### chr11 rmsk gene 25177486 25182878 . + . gene_id "ERV316A3_11p14.3e"; transcript_id "ERV316A3_11p14.3e"; locus "ERV316A3_11p14.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1922"; model_cov "4857"; model_pct "92.9"; chr11 rmsk exon 25177486 25182356 5693 + . gene_id "ERV316A3_11p14.3e"; transcript_id "ERV316A3_11p14.3e"; locus "ERV316A3_11p14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1922"; repClass "LTR"; repEnd "4959"; repFamily "ERVL"; repLeft "-267"; repStart "102"; chr11 rmsk exon 25182567 25182878 452 + . gene_id "ERV316A3_11p14.3e"; transcript_id "ERV316A3_11p14.3e"; locus "ERV316A3_11p14.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1922"; repClass "LTR"; repEnd "344"; repFamily "ERVL"; repLeft "-107"; repStart "21"; ### HERVH_11p14.3c ### chr11 rmsk gene 25326796 25330485 . - . gene_id "HERVH_11p14.3c"; transcript_id "HERVH_11p14.3c"; locus "HERVH_11p14.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0851"; model_cov "3145"; model_pct "40.8"; chr11 rmsk exon 25326796 25327285 3116 - . gene_id "HERVH_11p14.3c"; transcript_id "HERVH_11p14.3c"; locus "HERVH_11p14.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0851"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 25327288 25327841 3476 - . gene_id "HERVH_11p14.3c"; transcript_id "HERVH_11p14.3c"; locus "HERVH_11p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0851"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "7157"; repStart "-2"; chr11 rmsk exon 25327835 25330485 13216 - . gene_id "HERVH_11p14.3c"; transcript_id "HERVH_11p14.3c"; locus "HERVH_11p14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0851"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "3425"; repStart "-1697"; ### ERV316A3_11p14.3f ### chr11 rmsk gene 25398239 25399314 . + . gene_id "ERV316A3_11p14.3f"; transcript_id "ERV316A3_11p14.3f"; locus "ERV316A3_11p14.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1924"; model_cov "617"; model_pct "11.8"; chr11 rmsk exon 25398239 25398831 1515 + . gene_id "ERV316A3_11p14.3f"; transcript_id "ERV316A3_11p14.3f"; locus "ERV316A3_11p14.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1924"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4609"; chr11 rmsk exon 25398832 25399314 734 + . gene_id "ERV316A3_11p14.3f"; transcript_id "ERV316A3_11p14.3f"; locus "ERV316A3_11p14.3f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1924"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVH_11p14.3d ### chr11 rmsk gene 25486495 25490964 . - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0852"; model_cov "4220"; model_pct "54.7"; chr11 rmsk exon 25486495 25486905 2600 - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0852"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 25486906 25487279 2273 - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0852"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 25487278 25487485 1169 - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0852"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 25487487 25489557 8471 - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0852"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4199"; repStart "-1290"; chr11 rmsk exon 25489537 25490964 9339 - . gene_id "HERVH_11p14.3d"; transcript_id "HERVH_11p14.3d"; locus "HERVH_11p14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0852"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1609"; repStart "-4718"; ### ERV316A3_11p14.3g ### chr11 rmsk gene 25639149 25640433 . + . gene_id "ERV316A3_11p14.3g"; transcript_id "ERV316A3_11p14.3g"; locus "ERV316A3_11p14.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1925"; model_cov "621"; model_pct "11.9"; chr11 rmsk exon 25639149 25639774 1360 + . gene_id "ERV316A3_11p14.3g"; transcript_id "ERV316A3_11p14.3g"; locus "ERV316A3_11p14.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1925"; repClass "LTR"; repEnd "5003"; repFamily "ERVL"; repLeft "-223"; repStart "4382"; chr11 rmsk exon 25640045 25640157 371 + . gene_id "ERV316A3_11p14.3g"; transcript_id "ERV316A3_11p14.3g"; locus "ERV316A3_11p14.3g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1925"; repClass "LTR"; repEnd "157"; repFamily "ERVL"; repLeft "-265"; repStart "36"; chr11 rmsk exon 25640162 25640433 406 + . gene_id "ERV316A3_11p14.3g"; transcript_id "ERV316A3_11p14.3g"; locus "ERV316A3_11p14.3g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1925"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "186"; ### ERV316A3_11p14.3h ### chr11 rmsk gene 25797269 25798019 . - . gene_id "ERV316A3_11p14.3h"; transcript_id "ERV316A3_11p14.3h"; locus "ERV316A3_11p14.3h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1927"; model_cov "603"; model_pct "11.5"; chr11 rmsk exon 25797269 25797372 277 - . gene_id "ERV316A3_11p14.3h"; transcript_id "ERV316A3_11p14.3h"; locus "ERV316A3_11p14.3h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1927"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "83"; repStart "-262"; chr11 rmsk exon 25797439 25798019 1215 - . gene_id "ERV316A3_11p14.3h"; transcript_id "ERV316A3_11p14.3h"; locus "ERV316A3_11p14.3h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1927"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4622"; repStart "-1"; ### HERVW_11p14.3b ### chr11 rmsk gene 26001116 26005726 . + . gene_id "HERVW_11p14.3b"; transcript_id "HERVW_11p14.3b"; locus "HERVW_11p14.3b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0213"; model_cov "6067"; model_pct "70.3"; chr11 rmsk exon 26001116 26001394 2227 + . gene_id "HERVW_11p14.3b"; transcript_id "HERVW_11p14.3b"; locus "HERVW_11p14.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0213"; repClass "LTR"; repEnd "1952"; repFamily "ERV1"; repLeft "-6674"; repStart "1674"; chr11 rmsk exon 26001588 26005649 17702 + . gene_id "HERVW_11p14.3b"; transcript_id "HERVW_11p14.3b"; locus "HERVW_11p14.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0213"; repClass "LTR"; repEnd "7326"; repFamily "ERV1"; repLeft "-1300"; repStart "1537"; chr11 rmsk exon 26005652 26005726 334 + . gene_id "HERVW_11p14.3b"; transcript_id "HERVW_11p14.3b"; locus "HERVW_11p14.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0213"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "704"; ### HUERSP2_11p14.3 ### chr11 rmsk gene 26148039 26150485 . - . gene_id "HUERSP2_11p14.3"; transcript_id "HUERSP2_11p14.3"; locus "HUERSP2_11p14.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0080"; model_cov "1277"; model_pct "41.4"; chr11 rmsk exon 26148039 26148134 690 - . gene_id "HUERSP2_11p14.3"; transcript_id "HUERSP2_11p14.3"; locus "HUERSP2_11p14.3"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0080"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "880"; repStart "0"; chr11 rmsk exon 26148136 26149477 4252 - . gene_id "HUERSP2_11p14.3"; transcript_id "HUERSP2_11p14.3"; locus "HUERSP2_11p14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0080"; repClass "LTR"; repEnd "1352"; repFamily "ERV1"; repLeft "75"; repStart "-1736"; chr11 rmsk exon 26149612 26150485 4917 - . gene_id "HUERSP2_11p14.3"; transcript_id "HUERSP2_11p14.3"; locus "HUERSP2_11p14.3"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0080"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_11p14.2 ### chr11 rmsk gene 26590431 26597675 . - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0214"; model_cov "5741"; model_pct "66.6"; chr11 rmsk exon 26590431 26591206 5286 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 26591220 26591499 2336 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "8613"; repFamily "ERV1"; repLeft "8335"; repStart "-13"; chr11 rmsk exon 26591490 26591528 318 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr11 rmsk exon 26591525 26593269 14215 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "5405"; repStart "-1479"; chr11 rmsk exon 26593249 26595460 23773 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "1536"; repStart "-4872"; chr11 rmsk exon 26595488 26596290 23773 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "1535"; repFamily "ERV1"; repLeft "732"; repStart "-7091"; chr11 rmsk exon 26596458 26597128 4993 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "684"; repFamily "ERV1"; repLeft "22"; repStart "-7942"; chr11 rmsk exon 26597151 26597675 3848 - . gene_id "HERVW_11p14.2"; transcript_id "HERVW_11p14.2"; locus "HERVW_11p14.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0214"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERV316A3_11p14.2 ### chr11 rmsk gene 26738715 26741356 . + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1928"; model_cov "1883"; model_pct "36.0"; chr11 rmsk exon 26738715 26738929 609 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "1141"; repFamily "ERVL"; repLeft "-4085"; repStart "936"; chr11 rmsk exon 26739495 26739702 660 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "1526"; repFamily "ERVL"; repLeft "-3700"; repStart "1318"; chr11 rmsk exon 26739739 26740525 2356 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "2698"; repFamily "ERVL"; repLeft "-2528"; repStart "1914"; chr11 rmsk exon 26740604 26741042 1024 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "3288"; repFamily "ERVL"; repLeft "-1938"; repStart "2812"; chr11 rmsk exon 26741044 26741132 357 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "3523"; repFamily "ERVL"; repLeft "-1703"; repStart "3433"; chr11 rmsk exon 26741240 26741356 298 + . gene_id "ERV316A3_11p14.2"; transcript_id "ERV316A3_11p14.2"; locus "ERV316A3_11p14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1928"; repClass "LTR"; repEnd "3892"; repFamily "ERVL"; repLeft "-1334"; repStart "3772"; ### MER41_11p14.2 ### chr11 rmsk gene 26763841 26767574 . + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0360"; model_cov "3223"; model_pct "54.2"; chr11 rmsk exon 26763841 26764570 4204 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0360"; repClass "LTR"; repEnd "929"; repFamily "ERV1"; repLeft "-5017"; repStart "169"; chr11 rmsk exon 26764557 26765095 2921 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0360"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "1206"; chr11 rmsk exon 26765075 26765152 498 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0360"; repClass "LTR"; repEnd "1707"; repFamily "ERV1"; repLeft "-4239"; repStart "1627"; chr11 rmsk exon 26765178 26765909 3332 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0360"; repClass "LTR"; repEnd "2701"; repFamily "ERV1"; repLeft "-3245"; repStart "1944"; chr11 rmsk exon 26765908 26766946 7096 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0360"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4889"; chr11 rmsk exon 26766947 26767574 4112 + . gene_id "MER41_11p14.2"; transcript_id "MER41_11p14.2"; locus "MER41_11p14.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0360"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_11p14.1 ### chr11 rmsk gene 27548823 27555802 . - . gene_id "ERVL_11p14.1"; transcript_id "ERVL_11p14.1"; locus "ERVL_11p14.1"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0303"; model_cov "5750"; model_pct "99.9"; chr11 rmsk exon 27548823 27549302 2140 - . gene_id "ERVL_11p14.1"; transcript_id "ERVL_11p14.1"; locus "ERVL_11p14.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0303"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 27549312 27554966 30604 - . gene_id "ERVL_11p14.1"; transcript_id "ERVL_11p14.1"; locus "ERVL_11p14.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0303"; repClass "LTR"; repEnd "5752"; repFamily "ERVL"; repLeft "2"; repStart "-5"; chr11 rmsk exon 27554968 27555018 234 - . gene_id "ERVL_11p14.1"; transcript_id "ERVL_11p14.1"; locus "ERVL_11p14.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0303"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "473"; repStart "0"; chr11 rmsk exon 27555371 27555802 1951 - . gene_id "ERVL_11p14.1"; transcript_id "ERVL_11p14.1"; locus "ERVL_11p14.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0303"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-30"; repStart "-123"; ### HERVH_11p14.1a ### chr11 rmsk gene 27629072 27634926 . - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0853"; model_cov "5061"; model_pct "65.6"; chr11 rmsk exon 27629072 27629519 3716 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 27629520 27629899 2537 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 27629898 27630109 1397 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 27630111 27630772 4434 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 27630775 27631277 3417 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 27631268 27634476 20723 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr11 rmsk exon 27634479 27634926 3717 - . gene_id "HERVH_11p14.1a"; transcript_id "HERVH_11p14.1a"; locus "HERVH_11p14.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0853"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_11p14.1 ### chr11 rmsk gene 27636181 27639100 . - . gene_id "HUERSP1_11p14.1"; transcript_id "HUERSP1_11p14.1"; locus "HUERSP1_11p14.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0133"; model_cov "2050"; model_pct "32.7"; chr11 rmsk exon 27636181 27636236 413 - . gene_id "HUERSP1_11p14.1"; transcript_id "HUERSP1_11p14.1"; locus "HUERSP1_11p14.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0133"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "594"; repStart "-42"; chr11 rmsk exon 27636238 27638413 11739 - . gene_id "HUERSP1_11p14.1"; transcript_id "HUERSP1_11p14.1"; locus "HUERSP1_11p14.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0133"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "318"; repStart "-3895"; chr11 rmsk exon 27638414 27639100 2760 - . gene_id "HUERSP1_11p14.1"; transcript_id "HUERSP1_11p14.1"; locus "HUERSP1_11p14.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0133"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HERVL_11p14.1a ### chr11 rmsk gene 27767705 27769257 . - . gene_id "HERVL_11p14.1a"; transcript_id "HERVL_11p14.1a"; locus "HERVL_11p14.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0895"; model_cov "788"; model_pct "13.9"; chr11 rmsk exon 27767705 27767984 3553 - . gene_id "HERVL_11p14.1a"; transcript_id "HERVL_11p14.1a"; locus "HERVL_11p14.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0895"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "191"; repStart "0"; chr11 rmsk exon 27768273 27768456 3553 - . gene_id "HERVL_11p14.1a"; transcript_id "HERVL_11p14.1a"; locus "HERVL_11p14.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0895"; repClass "LTR"; repEnd "190"; repFamily "ERVL"; repLeft "6"; repStart "-263"; chr11 rmsk exon 27768461 27769190 5805 - . gene_id "HERVL_11p14.1a"; transcript_id "HERVL_11p14.1a"; locus "HERVL_11p14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0895"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4924"; repStart "0"; chr11 rmsk exon 27769199 27769257 457 - . gene_id "HERVL_11p14.1a"; transcript_id "HERVL_11p14.1a"; locus "HERVL_11p14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0895"; repClass "LTR"; repEnd "4606"; repFamily "ERVL"; repLeft "4548"; repStart "-1048"; ### MER41_11p14.1a ### chr11 rmsk gene 27928526 27933125 . - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0361"; model_cov "3287"; model_pct "55.3"; chr11 rmsk exon 27928526 27929049 3696 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0361"; repClass "LTR"; repEnd "531"; repFamily "ERV1"; repLeft "3"; repStart "-23"; chr11 rmsk exon 27929051 27930380 8772 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0361"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4590"; repStart "0"; chr11 rmsk exon 27930378 27930960 2567 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0361"; repClass "LTR"; repEnd "3207"; repFamily "ERV1"; repLeft "2547"; repStart "-2739"; chr11 rmsk exon 27930947 27931679 4417 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0361"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "2163"; repStart "-3000"; chr11 rmsk exon 27931672 27931789 788 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0361"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1901"; repStart "-3929"; chr11 rmsk exon 27931791 27932151 2175 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0361"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "1390"; repStart "-4184"; chr11 rmsk exon 27932590 27933125 3562 - . gene_id "MER41_11p14.1a"; transcript_id "MER41_11p14.1a"; locus "MER41_11p14.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0361"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_11p14.1 ### chr11 rmsk gene 28134547 28139969 . - . gene_id "LTR25_11p14.1"; transcript_id "LTR25_11p14.1"; locus "LTR25_11p14.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0084"; model_cov "5590"; model_pct "77.8"; chr11 rmsk exon 28134547 28136182 18225 - . gene_id "LTR25_11p14.1"; transcript_id "LTR25_11p14.1"; locus "LTR25_11p14.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0084"; repClass "LTR"; repEnd "7163"; repFamily "ERV1"; repLeft "5563"; repStart "-25"; chr11 rmsk exon 28136533 28139656 18225 - . gene_id "LTR25_11p14.1"; transcript_id "LTR25_11p14.1"; locus "LTR25_11p14.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0084"; repClass "LTR"; repEnd "5562"; repFamily "ERV1"; repLeft "2170"; repStart "-1626"; chr11 rmsk exon 28139652 28139969 1268 - . gene_id "LTR25_11p14.1"; transcript_id "LTR25_11p14.1"; locus "LTR25_11p14.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0084"; repClass "LTR"; repEnd "984"; repFamily "ERV1"; repLeft "386"; repStart "-6204"; ### HUERSP2_11p14.1 ### chr11 rmsk gene 28139987 28140539 . - . gene_id "HUERSP2_11p14.1"; transcript_id "HUERSP2_11p14.1"; locus "HUERSP2_11p14.1"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0081"; model_cov "557"; model_pct "18.0"; chr11 rmsk exon 28139987 28140539 902 - . gene_id "HUERSP2_11p14.1"; transcript_id "HUERSP2_11p14.1"; locus "HUERSP2_11p14.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0081"; repClass "LTR"; repEnd "-3402"; repFamily "ERV1"; repLeft "-3959"; repStart "-6490"; ### HERVL_11p14.1b ### chr11 rmsk gene 28157061 28160331 . + . gene_id "HERVL_11p14.1b"; transcript_id "HERVL_11p14.1b"; locus "HERVL_11p14.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0896"; model_cov "2761"; model_pct "48.8"; chr11 rmsk exon 28157061 28157123 529 + . gene_id "HERVL_11p14.1b"; transcript_id "HERVL_11p14.1b"; locus "HERVL_11p14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0896"; repClass "LTR"; repEnd "63"; repFamily "ERVL"; repLeft "-381"; repStart "1"; chr11 rmsk exon 28157125 28159885 21681 + . gene_id "HERVL_11p14.1b"; transcript_id "HERVL_11p14.1b"; locus "HERVL_11p14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0896"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2893"; chr11 rmsk exon 28159891 28160331 2348 + . gene_id "HERVL_11p14.1b"; transcript_id "HERVL_11p14.1b"; locus "HERVL_11p14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0896"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### ERVLE_11p14.1a ### chr11 rmsk gene 28451939 28454736 . - . gene_id "ERVLE_11p14.1a"; transcript_id "ERVLE_11p14.1a"; locus "ERVLE_11p14.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2490"; model_cov "1676"; model_pct "29.6"; chr11 rmsk exon 28451939 28452230 337 - . gene_id "ERVLE_11p14.1a"; transcript_id "ERVLE_11p14.1a"; locus "ERVLE_11p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2490"; repClass "LTR"; repEnd "5053"; repFamily "ERVL"; repLeft "4754"; repStart "-614"; chr11 rmsk exon 28452707 28453257 928 - . gene_id "ERVLE_11p14.1a"; transcript_id "ERVLE_11p14.1a"; locus "ERVLE_11p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2490"; repClass "LTR"; repEnd "4117"; repFamily "ERVL"; repLeft "3534"; repStart "-1550"; chr11 rmsk exon 28453315 28453608 643 - . gene_id "ERVLE_11p14.1a"; transcript_id "ERVLE_11p14.1a"; locus "ERVLE_11p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2490"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2139"; repStart "-3215"; chr11 rmsk exon 28454264 28454736 760 - . gene_id "ERVLE_11p14.1a"; transcript_id "ERVLE_11p14.1a"; locus "ERVLE_11p14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2490"; repClass "LTR"; repEnd "1434"; repFamily "ERVL"; repLeft "953"; repStart "-4233"; ### ERV316A3_11p14.1a ### chr11 rmsk gene 28611488 28612681 . - . gene_id "ERV316A3_11p14.1a"; transcript_id "ERV316A3_11p14.1a"; locus "ERV316A3_11p14.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1929"; model_cov "1215"; model_pct "23.2"; chr11 rmsk exon 28611488 28612681 2588 - . gene_id "ERV316A3_11p14.1a"; transcript_id "ERV316A3_11p14.1a"; locus "ERV316A3_11p14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1929"; repClass "LTR"; repEnd "5137"; repFamily "ERVL"; repLeft "3922"; repStart "-89"; ### ERVLE_11p14.1b ### chr11 rmsk gene 29136551 29137209 . - . gene_id "ERVLE_11p14.1b"; transcript_id "ERVLE_11p14.1b"; locus "ERVLE_11p14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2491"; model_cov "672"; model_pct "11.9"; chr11 rmsk exon 29136551 29137209 1361 - . gene_id "ERVLE_11p14.1b"; transcript_id "ERVLE_11p14.1b"; locus "ERVLE_11p14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2491"; repClass "LTR"; repEnd "966"; repFamily "ERVL"; repLeft "294"; repStart "-4701"; ### HERV3_11p14.1 ### chr11 rmsk gene 29518506 29527987 . + . gene_id "HERV3_11p14.1"; transcript_id "HERV3_11p14.1"; locus "HERV3_11p14.1"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0042"; model_cov "8407"; model_pct "99.8"; chr11 rmsk exon 29518506 29519128 1777 + . gene_id "HERV3_11p14.1"; transcript_id "HERV3_11p14.1"; locus "HERV3_11p14.1"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0042"; repClass "LTR"; repEnd "593"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr11 rmsk exon 29519152 29527353 38354 + . gene_id "HERV3_11p14.1"; transcript_id "HERV3_11p14.1"; locus "HERV3_11p14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0042"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "19"; chr11 rmsk exon 29527354 29527987 1796 + . gene_id "HERV3_11p14.1"; transcript_id "HERV3_11p14.1"; locus "HERV3_11p14.1"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0042"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11p14.1b ### chr11 rmsk gene 29677514 29678643 . - . gene_id "ERV316A3_11p14.1b"; transcript_id "ERV316A3_11p14.1b"; locus "ERV316A3_11p14.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1930"; model_cov "666"; model_pct "12.7"; chr11 rmsk exon 29677514 29677968 1433 - . gene_id "ERV316A3_11p14.1b"; transcript_id "ERV316A3_11p14.1b"; locus "ERV316A3_11p14.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1930"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 29677975 29678643 1964 - . gene_id "ERV316A3_11p14.1b"; transcript_id "ERV316A3_11p14.1b"; locus "ERV316A3_11p14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1930"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "4554"; repStart "-6"; ### HERVH_11p14.1b ### chr11 rmsk gene 29705754 29707328 . - . gene_id "HERVH_11p14.1b"; transcript_id "HERVH_11p14.1b"; locus "HERVH_11p14.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0854"; model_cov "1231"; model_pct "16.0"; chr11 rmsk exon 29705754 29706108 1813 - . gene_id "HERVH_11p14.1b"; transcript_id "HERVH_11p14.1b"; locus "HERVH_11p14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0854"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr11 rmsk exon 29706109 29706546 2535 - . gene_id "HERVH_11p14.1b"; transcript_id "HERVH_11p14.1b"; locus "HERVH_11p14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0854"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr11 rmsk exon 29706530 29707328 5477 - . gene_id "HERVH_11p14.1b"; transcript_id "HERVH_11p14.1b"; locus "HERVH_11p14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0854"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4233"; repStart "-2693"; ### ERV316A3_11p14.1c ### chr11 rmsk gene 29822381 29823949 . - . gene_id "ERV316A3_11p14.1c"; transcript_id "ERV316A3_11p14.1c"; locus "ERV316A3_11p14.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1931"; model_cov "534"; model_pct "10.2"; chr11 rmsk exon 29822381 29822814 846 - . gene_id "ERV316A3_11p14.1c"; transcript_id "ERV316A3_11p14.1c"; locus "ERV316A3_11p14.1c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1931"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "2"; repStart "-4"; chr11 rmsk exon 29823192 29823386 681 - . gene_id "ERV316A3_11p14.1c"; transcript_id "ERV316A3_11p14.1c"; locus "ERV316A3_11p14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1931"; repClass "LTR"; repEnd "4555"; repFamily "ERVL"; repLeft "4363"; repStart "-671"; chr11 rmsk exon 29823582 29823695 681 - . gene_id "ERV316A3_11p14.1c"; transcript_id "ERV316A3_11p14.1c"; locus "ERV316A3_11p14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1931"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "4249"; repStart "-864"; chr11 rmsk exon 29823715 29823949 726 - . gene_id "ERV316A3_11p14.1c"; transcript_id "ERV316A3_11p14.1c"; locus "ERV316A3_11p14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1931"; repClass "LTR"; repEnd "3988"; repFamily "ERVL"; repLeft "3759"; repStart "-1238"; ### HERVH_11p14.1c ### chr11 rmsk gene 29973622 29977330 . + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0855"; model_cov "3536"; model_pct "45.8"; chr11 rmsk exon 29973622 29973796 1199 + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0855"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "290"; chr11 rmsk exon 29973797 29974433 13856 + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0855"; repClass "LTR"; repEnd "950"; repFamily "ERV1"; repLeft "-6763"; repStart "1"; chr11 rmsk exon 29974747 29976814 13856 + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0855"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "951"; chr11 rmsk exon 29976794 29976940 865 + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0855"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 29976931 29977330 2342 + . gene_id "HERVH_11p14.1c"; transcript_id "HERVH_11p14.1c"; locus "HERVH_11p14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0855"; repClass "LTR"; repEnd "3885"; repFamily "ERV1"; repLeft "-3828"; repStart "3492"; ### HERVL18_11p14.1 ### chr11 rmsk gene 30044711 30047428 . + . gene_id "HERVL18_11p14.1"; transcript_id "HERVL18_11p14.1"; locus "HERVL18_11p14.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0106"; model_cov "1883"; model_pct "31.1"; chr11 rmsk exon 30044711 30045318 1967 + . gene_id "HERVL18_11p14.1"; transcript_id "HERVL18_11p14.1"; locus "HERVL18_11p14.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0106"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr11 rmsk exon 30045354 30047187 9674 + . gene_id "HERVL18_11p14.1"; transcript_id "HERVL18_11p14.1"; locus "HERVL18_11p14.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0106"; repClass "LTR"; repEnd "1887"; repFamily "ERVL"; repLeft "-4160"; repStart "4"; chr11 rmsk exon 30047188 30047428 1776 + . gene_id "HERVL18_11p14.1"; transcript_id "HERVL18_11p14.1"; locus "HERVL18_11p14.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0106"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-2"; repStart "103"; ### MER41_11p14.1b ### chr11 rmsk gene 30639955 30642603 . + . gene_id "MER41_11p14.1b"; transcript_id "MER41_11p14.1b"; locus "MER41_11p14.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0362"; model_cov "1531"; model_pct "25.7"; chr11 rmsk exon 30639955 30640498 3808 + . gene_id "MER41_11p14.1b"; transcript_id "MER41_11p14.1b"; locus "MER41_11p14.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0362"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 30640499 30641296 4141 + . gene_id "MER41_11p14.1b"; transcript_id "MER41_11p14.1b"; locus "MER41_11p14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0362"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "1"; chr11 rmsk exon 30641272 30641941 2572 + . gene_id "MER41_11p14.1b"; transcript_id "MER41_11p14.1b"; locus "MER41_11p14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0362"; repClass "LTR"; repEnd "1440"; repFamily "ERV1"; repLeft "-4506"; repStart "955"; chr11 rmsk exon 30642249 30642603 2572 + . gene_id "MER41_11p14.1b"; transcript_id "MER41_11p14.1b"; locus "MER41_11p14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0362"; repClass "LTR"; repEnd "2962"; repFamily "ERV1"; repLeft "-2984"; repStart "2605"; ### PABLA_11p14.1 ### chr11 rmsk gene 30642598 30644796 . + . gene_id "PABLA_11p14.1"; transcript_id "PABLA_11p14.1"; locus "PABLA_11p14.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0100"; model_cov "3115"; model_pct "62.1"; chr11 rmsk exon 30642598 30644796 7386 + . gene_id "PABLA_11p14.1"; transcript_id "PABLA_11p14.1"; locus "PABLA_11p14.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0100"; repClass "LTR"; repEnd "4991"; repFamily "ERV1"; repLeft "-24"; repStart "1876"; ### HERVP71A_11p14.1 ### chr11 rmsk gene 30933692 30939820 . - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0053"; model_cov "4214"; model_pct "55.5"; chr11 rmsk exon 30933692 30933744 345 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "407"; repStart "0"; chr11 rmsk exon 30933745 30935540 19004 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "7363"; repFamily "ERV1"; repLeft "5568"; repStart "-227"; chr11 rmsk exon 30935852 30936500 19004 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "5567"; repFamily "ERV1"; repLeft "4899"; repStart "-2023"; chr11 rmsk exon 30936814 30937730 6883 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "2609"; repFamily "ERV1"; repLeft "1679"; repStart "-4981"; chr11 rmsk exon 30938540 30939362 5586 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "2"; repStart "-6767"; chr11 rmsk exon 30939363 30939820 3216 - . gene_id "HERVP71A_11p14.1"; transcript_id "HERVP71A_11p14.1"; locus "HERVP71A_11p14.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0053"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11p14.1c ### chr11 rmsk gene 30957507 30958822 . + . gene_id "ERVLE_11p14.1c"; transcript_id "ERVLE_11p14.1c"; locus "ERVLE_11p14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2494"; model_cov "1356"; model_pct "23.9"; chr11 rmsk exon 30957507 30958355 1460 + . gene_id "ERVLE_11p14.1c"; transcript_id "ERVLE_11p14.1c"; locus "ERVLE_11p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2494"; repClass "LTR"; repEnd "3988"; repFamily "ERVL"; repLeft "-1679"; repStart "3075"; chr11 rmsk exon 30958367 30958822 789 + . gene_id "ERVLE_11p14.1c"; transcript_id "ERVLE_11p14.1c"; locus "ERVLE_11p14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2494"; repClass "LTR"; repEnd "5112"; repFamily "ERVL"; repLeft "-555"; repStart "4669"; ### HERVFH21_11p13 ### chr11 rmsk gene 31607846 31609655 . - . gene_id "HERVFH21_11p13"; transcript_id "HERVFH21_11p13"; locus "HERVFH21_11p13"; category "internal"; intModel "HERVFH21-int"; locid "HERVFH21-int_0027"; model_cov "1756"; model_pct "26.9"; chr11 rmsk exon 31607846 31608106 572 - . gene_id "HERVFH21_11p13"; transcript_id "HERVFH21_11p13"; locus "HERVFH21_11p13"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0027"; repClass "LTR"; repEnd "6183"; repFamily "ERV1"; repLeft "5986"; repStart "-346"; chr11 rmsk exon 31608101 31608165 524 - . gene_id "HERVFH21_11p13"; transcript_id "HERVFH21_11p13"; locus "HERVFH21_11p13"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0027"; repClass "LTR"; repEnd "4714"; repFamily "ERV1"; repLeft "4650"; repStart "-1815"; chr11 rmsk exon 31608170 31609655 6303 - . gene_id "HERVFH21_11p13"; transcript_id "HERVFH21_11p13"; locus "HERVFH21_11p13"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0027"; repClass "LTR"; repEnd "2785"; repFamily "ERV1"; repLeft "1290"; repStart "-3744"; ### MER101_11p13 ### chr11 rmsk gene 32864409 32865580 . - . gene_id "MER101_11p13"; transcript_id "MER101_11p13"; locus "MER101_11p13"; category "internal"; intModel "MER101-int"; locid "MER101-int_0269"; model_cov "1243"; model_pct "18.7"; chr11 rmsk exon 32864409 32864978 2960 - . gene_id "MER101_11p13"; transcript_id "MER101_11p13"; locus "MER101_11p13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0269"; repClass "LTR"; repEnd "3777"; repFamily "ERV1"; repLeft "2839"; repStart "-2862"; chr11 rmsk exon 32865278 32865580 1912 - . gene_id "MER101_11p13"; transcript_id "MER101_11p13"; locus "MER101_11p13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0269"; repClass "LTR"; repEnd "3454"; repFamily "ERV1"; repLeft "3149"; repStart "-3185"; ### ERV316A3_11p13a ### chr11 rmsk gene 33202751 33203516 . + . gene_id "ERV316A3_11p13a"; transcript_id "ERV316A3_11p13a"; locus "ERV316A3_11p13a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1932"; model_cov "560"; model_pct "10.7"; chr11 rmsk exon 33202751 33202978 832 + . gene_id "ERV316A3_11p13a"; transcript_id "ERV316A3_11p13a"; locus "ERV316A3_11p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1932"; repClass "LTR"; repEnd "2434"; repFamily "ERVL"; repLeft "-2792"; repStart "2196"; chr11 rmsk exon 33202984 33203034 664 + . gene_id "ERV316A3_11p13a"; transcript_id "ERV316A3_11p13a"; locus "ERV316A3_11p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1932"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "-2274"; repStart "2907"; chr11 rmsk exon 33203321 33203516 698 + . gene_id "ERV316A3_11p13a"; transcript_id "ERV316A3_11p13a"; locus "ERV316A3_11p13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1932"; repClass "LTR"; repEnd "3152"; repFamily "ERVL"; repLeft "-2074"; repStart "2875"; ### ERV316A3_11p13b ### chr11 rmsk gene 34846637 34850312 . + . gene_id "ERV316A3_11p13b"; transcript_id "ERV316A3_11p13b"; locus "ERV316A3_11p13b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1933"; model_cov "2888"; model_pct "55.3"; chr11 rmsk exon 34846637 34847034 1466 + . gene_id "ERV316A3_11p13b"; transcript_id "ERV316A3_11p13b"; locus "ERV316A3_11p13b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1933"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "39"; chr11 rmsk exon 34847037 34848671 4468 + . gene_id "ERV316A3_11p13b"; transcript_id "ERV316A3_11p13b"; locus "ERV316A3_11p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1933"; repClass "LTR"; repEnd "1692"; repFamily "ERVL"; repLeft "-3534"; repStart "7"; chr11 rmsk exon 34849041 34850231 4468 + . gene_id "ERV316A3_11p13b"; transcript_id "ERV316A3_11p13b"; locus "ERV316A3_11p13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1933"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "-2330"; repStart "1693"; chr11 rmsk exon 34850237 34850312 413 + . gene_id "ERV316A3_11p13b"; transcript_id "ERV316A3_11p13b"; locus "ERV316A3_11p13b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1933"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "381"; ### ERV316A3_11p13c ### chr11 rmsk gene 34865534 34870913 . - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1934"; model_cov "3747"; model_pct "71.7"; chr11 rmsk exon 34865534 34865937 1538 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "3877"; repFamily "ERVL"; repLeft "3460"; repStart "-1349"; chr11 rmsk exon 34866333 34866387 641 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "2849"; repStart "-2325"; chr11 rmsk exon 34866838 34867555 6923 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "2848"; repFamily "ERVL"; repLeft "1983"; repStart "-2378"; chr11 rmsk exon 34867715 34868659 6923 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "1516"; repStart "-2803"; chr11 rmsk exon 34868937 34870375 6923 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "1515"; repFamily "ERVL"; repLeft "9"; repStart "-3711"; chr11 rmsk exon 34870380 34870478 1314 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "365"; repStart "0"; chr11 rmsk exon 34870592 34870913 1314 - . gene_id "ERV316A3_11p13c"; transcript_id "ERV316A3_11p13c"; locus "ERV316A3_11p13c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1934"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "6"; repStart "-87"; ### HUERSP3_11p13 ### chr11 rmsk gene 34897477 34907140 . + . gene_id "HUERSP3_11p13"; transcript_id "HUERSP3_11p13"; locus "HUERSP3_11p13"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0138"; model_cov "8917"; model_pct "100.0"; chr11 rmsk exon 34897477 34898115 3319 + . gene_id "HUERSP3_11p13"; transcript_id "HUERSP3_11p13"; locus "HUERSP3_11p13"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0138"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 34898116 34898773 40584 + . gene_id "HUERSP3_11p13"; transcript_id "HUERSP3_11p13"; locus "HUERSP3_11p13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0138"; repClass "LTR"; repEnd "731"; repFamily "ERV1"; repLeft "-8188"; repStart "1"; chr11 rmsk exon 34899169 34907140 40584 + . gene_id "HUERSP3_11p13"; transcript_id "HUERSP3_11p13"; locus "HUERSP3_11p13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0138"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "732"; ### ERVLE_11p13 ### chr11 rmsk gene 35104571 35106531 . + . gene_id "ERVLE_11p13"; transcript_id "ERVLE_11p13"; locus "ERVLE_11p13"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2497"; model_cov "1467"; model_pct "25.9"; chr11 rmsk exon 35104571 35105279 3368 + . gene_id "ERVLE_11p13"; transcript_id "ERVLE_11p13"; locus "ERVLE_11p13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2497"; repClass "LTR"; repEnd "4516"; repFamily "ERVL"; repLeft "-1151"; repStart "3808"; chr11 rmsk exon 35105807 35106531 3368 + . gene_id "ERVLE_11p13"; transcript_id "ERVLE_11p13"; locus "ERVLE_11p13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2497"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "-391"; repStart "4517"; ### ERV316A3_11p13d ### chr11 rmsk gene 35533578 35535594 . + . gene_id "ERV316A3_11p13d"; transcript_id "ERV316A3_11p13d"; locus "ERV316A3_11p13d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1935"; model_cov "1965"; model_pct "37.6"; chr11 rmsk exon 35533578 35533635 338 + . gene_id "ERV316A3_11p13d"; transcript_id "ERV316A3_11p13d"; locus "ERV316A3_11p13d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1935"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "-239"; repStart "124"; chr11 rmsk exon 35533640 35535594 6272 + . gene_id "ERV316A3_11p13d"; transcript_id "ERV316A3_11p13d"; locus "ERV316A3_11p13d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1935"; repClass "LTR"; repEnd "4033"; repFamily "ERVL"; repLeft "-1193"; repStart "2068"; ### MER41_11p13 ### chr11 rmsk gene 35701441 35702220 . - . gene_id "MER41_11p13"; transcript_id "MER41_11p13"; locus "MER41_11p13"; category "internal"; intModel "MER41-int"; locid "MER41-int_0363"; model_cov "607"; model_pct "10.2"; chr11 rmsk exon 35701441 35702220 3472 - . gene_id "MER41_11p13"; transcript_id "MER41_11p13"; locus "MER41_11p13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0363"; repClass "LTR"; repEnd "1330"; repFamily "ERV1"; repLeft "723"; repStart "-4616"; ### ERVLB4_11p13 ### chr11 rmsk gene 35844981 35847278 . + . gene_id "ERVLB4_11p13"; transcript_id "ERVLB4_11p13"; locus "ERVLB4_11p13"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1172"; model_cov "1132"; model_pct "19.8"; chr11 rmsk exon 35844981 35845364 1273 + . gene_id "ERVLB4_11p13"; transcript_id "ERVLB4_11p13"; locus "ERVLB4_11p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1172"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3262"; repStart "2080"; chr11 rmsk exon 35846363 35846528 485 + . gene_id "ERVLB4_11p13"; transcript_id "ERVLB4_11p13"; locus "ERVLB4_11p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1172"; repClass "LTR"; repEnd "3787"; repFamily "ERVL"; repLeft "-1927"; repStart "3618"; chr11 rmsk exon 35846529 35846591 279 + . gene_id "ERVLB4_11p13"; transcript_id "ERVLB4_11p13"; locus "ERVLB4_11p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1172"; repClass "LTR"; repEnd "4181"; repFamily "ERVL"; repLeft "-1533"; repStart "4118"; chr11 rmsk exon 35846785 35847278 867 + . gene_id "ERVLB4_11p13"; transcript_id "ERVLB4_11p13"; locus "ERVLB4_11p13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1172"; repClass "LTR"; repEnd "4905"; repFamily "ERVL"; repLeft "-809"; repStart "4377"; ### ERVL_11p13 ### chr11 rmsk gene 35845525 35846362 . - . gene_id "ERVL_11p13"; transcript_id "ERVL_11p13"; locus "ERVL_11p13"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0304"; model_cov "574"; model_pct "10.0"; chr11 rmsk exon 35845525 35845633 753 - . gene_id "ERVL_11p13"; transcript_id "ERVL_11p13"; locus "ERVL_11p13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0304"; repClass "LTR"; repEnd "3608"; repFamily "ERVL"; repLeft "3509"; repStart "-2149"; chr11 rmsk exon 35845949 35846362 753 - . gene_id "ERVL_11p13"; transcript_id "ERVL_11p13"; locus "ERVL_11p13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0304"; repClass "LTR"; repEnd "3508"; repFamily "ERVL"; repLeft "3033"; repStart "-2249"; ### HUERSP3B_11p12 ### chr11 rmsk gene 36665205 36673420 . + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0089"; model_cov "6518"; model_pct "87.9"; chr11 rmsk exon 36665205 36665825 3500 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 36665871 36665928 400 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "38"; chr11 rmsk exon 36665932 36667226 6693 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "1877"; repFamily "ERV1"; repLeft "-5541"; repStart "409"; chr11 rmsk exon 36667226 36667397 3467 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "2281"; repFamily "ERV1"; repLeft "-5137"; repStart "2111"; chr11 rmsk exon 36667697 36668022 3467 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2282"; chr11 rmsk exon 36668446 36669411 12042 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "4820"; repFamily "ERV1"; repLeft "-2598"; repStart "3303"; chr11 rmsk exon 36669696 36670656 17383 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "-1601"; repStart "4653"; chr11 rmsk exon 36670958 36672349 17383 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "6783"; repFamily "ERV1"; repLeft "-635"; repStart "5381"; chr11 rmsk exon 36672663 36672826 17383 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "-473"; repStart "6784"; chr11 rmsk exon 36673097 36673388 1353 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "7418"; repFamily "ERV1"; repLeft "0"; repStart "7200"; chr11 rmsk exon 36673389 36673420 253 + . gene_id "HUERSP3B_11p12"; transcript_id "HUERSP3B_11p12"; locus "HUERSP3B_11p12"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0089"; repClass "LTR"; repEnd "32"; repFamily "ERV1"; repLeft "-634"; repStart "1"; ### HERVL32_11p12a ### chr11 rmsk gene 36880518 36883340 . + . gene_id "HERVL32_11p12a"; transcript_id "HERVL32_11p12a"; locus "HERVL32_11p12a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0037"; model_cov "2279"; model_pct "66.7"; chr11 rmsk exon 36880518 36880863 1511 + . gene_id "HERVL32_11p12a"; transcript_id "HERVL32_11p12a"; locus "HERVL32_11p12a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0037"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-125"; repStart "1"; chr11 rmsk exon 36880905 36881064 542 + . gene_id "HERVL32_11p12a"; transcript_id "HERVL32_11p12a"; locus "HERVL32_11p12a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0037"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-5"; repStart "302"; chr11 rmsk exon 36881070 36883340 6411 + . gene_id "HERVL32_11p12a"; transcript_id "HERVL32_11p12a"; locus "HERVL32_11p12a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0037"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-1138"; repStart "1"; ### HERVL32_11p12b ### chr11 rmsk gene 36883393 36886216 . + . gene_id "HERVL32_11p12b"; transcript_id "HERVL32_11p12b"; locus "HERVL32_11p12b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0038"; model_cov "1228"; model_pct "35.9"; chr11 rmsk exon 36883393 36884437 2638 + . gene_id "HERVL32_11p12b"; transcript_id "HERVL32_11p12b"; locus "HERVL32_11p12b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0038"; repClass "LTR"; repEnd "1757"; repFamily "ERVL"; repLeft "-1661"; repStart "619"; chr11 rmsk exon 36885645 36885736 334 + . gene_id "HERVL32_11p12b"; transcript_id "HERVL32_11p12b"; locus "HERVL32_11p12b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0038"; repClass "LTR"; repEnd "3418"; repFamily "ERVL"; repLeft "0"; repStart "3328"; chr11 rmsk exon 36885739 36886216 2521 + . gene_id "HERVL32_11p12b"; transcript_id "HERVL32_11p12b"; locus "HERVL32_11p12b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0038"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER61_11p12a ### chr11 rmsk gene 36921119 36922825 . - . gene_id "MER61_11p12a"; transcript_id "MER61_11p12a"; locus "MER61_11p12a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0258"; model_cov "1421"; model_pct "27.2"; chr11 rmsk exon 36921119 36921452 1844 - . gene_id "MER61_11p12a"; transcript_id "MER61_11p12a"; locus "MER61_11p12a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0258"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 36921453 36922825 7367 - . gene_id "MER61_11p12a"; transcript_id "MER61_11p12a"; locus "MER61_11p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0258"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3796"; repStart "0"; ### ERVLB4_11p12 ### chr11 rmsk gene 37066646 37067862 . + . gene_id "ERVLB4_11p12"; transcript_id "ERVLB4_11p12"; locus "ERVLB4_11p12"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1175"; model_cov "1129"; model_pct "19.8"; chr11 rmsk exon 37066646 37067390 2219 + . gene_id "ERVLB4_11p12"; transcript_id "ERVLB4_11p12"; locus "ERVLB4_11p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1175"; repClass "LTR"; repEnd "4140"; repFamily "ERVL"; repLeft "-1574"; repStart "3304"; chr11 rmsk exon 37067573 37067862 1137 + . gene_id "ERVLB4_11p12"; transcript_id "ERVLB4_11p12"; locus "ERVLB4_11p12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1175"; repClass "LTR"; repEnd "4411"; repFamily "ERVL"; repLeft "-1303"; repStart "4118"; ### HERVL_11p12a ### chr11 rmsk gene 37349307 37350849 . + . gene_id "HERVL_11p12a"; transcript_id "HERVL_11p12a"; locus "HERVL_11p12a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0900"; model_cov "1524"; model_pct "27.0"; chr11 rmsk exon 37349307 37350347 7490 + . gene_id "HERVL_11p12a"; transcript_id "HERVL_11p12a"; locus "HERVL_11p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0900"; repClass "LTR"; repEnd "1747"; repFamily "ERVL"; repLeft "-3907"; repStart "724"; chr11 rmsk exon 37350349 37350849 3927 + . gene_id "HERVL_11p12a"; transcript_id "HERVL_11p12a"; locus "HERVL_11p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0900"; repClass "LTR"; repEnd "3539"; repFamily "ERVL"; repLeft "-2115"; repStart "3038"; ### ERV316A3_11p12a ### chr11 rmsk gene 37373389 37375713 . + . gene_id "ERV316A3_11p12a"; transcript_id "ERV316A3_11p12a"; locus "ERV316A3_11p12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1937"; model_cov "1945"; model_pct "37.2"; chr11 rmsk exon 37373389 37374885 1794 + . gene_id "ERV316A3_11p12a"; transcript_id "ERV316A3_11p12a"; locus "ERV316A3_11p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1937"; repClass "LTR"; repEnd "3667"; repFamily "ERVL"; repLeft "-1559"; repStart "2070"; chr11 rmsk exon 37375361 37375713 584 + . gene_id "ERV316A3_11p12a"; transcript_id "ERV316A3_11p12a"; locus "ERV316A3_11p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1937"; repClass "LTR"; repEnd "4363"; repFamily "ERVL"; repLeft "-863"; repStart "4015"; ### HERVH_11p12a ### chr11 rmsk gene 37578383 37583372 . - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0856"; model_cov "5018"; model_pct "65.1"; chr11 rmsk exon 37578383 37578756 1859 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 37578757 37579279 3224 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr11 rmsk exon 37579339 37579508 1160 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "6943"; repFamily "ERV1"; repLeft "6775"; repStart "-770"; chr11 rmsk exon 37579509 37579850 1281 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "5839"; repFamily "ERV1"; repLeft "5509"; repStart "-1874"; chr11 rmsk exon 37579833 37580849 5347 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "6190"; repFamily "ERV1"; repLeft "4846"; repStart "-1523"; chr11 rmsk exon 37580850 37581045 1048 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "3140"; repStart "-4375"; chr11 rmsk exon 37581025 37582236 4324 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1711"; repStart "-4718"; chr11 rmsk exon 37582232 37583060 2714 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "1155"; repFamily "ERV1"; repLeft "1"; repStart "-6558"; chr11 rmsk exon 37583061 37583372 1807 - . gene_id "HERVH_11p12a"; transcript_id "HERVH_11p12a"; locus "HERVH_11p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0856"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "85"; repStart "0"; ### HERVL18_11p12a ### chr11 rmsk gene 37905725 37908785 . - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0107"; model_cov "1917"; model_pct "31.7"; chr11 rmsk exon 37905725 37906281 2794 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 37906441 37906982 3403 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2947"; repStart "-2556"; chr11 rmsk exon 37906974 37907351 1943 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "2720"; repStart "-2959"; chr11 rmsk exon 37907328 37907627 1213 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "2477"; repFamily "ERVL"; repLeft "2119"; repStart "-3570"; chr11 rmsk exon 37907729 37908160 1438 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "19"; repStart "-5381"; chr11 rmsk exon 37908182 37908785 3054 - . gene_id "HERVL18_11p12a"; transcript_id "HERVL18_11p12a"; locus "HERVL18_11p12a"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0107"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_11p12a ### chr11 rmsk gene 38066064 38068359 . - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2500"; model_cov "1651"; model_pct "29.1"; chr11 rmsk exon 38066064 38066231 312 - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2500"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "47"; repStart "-419"; chr11 rmsk exon 38066278 38066560 934 - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2500"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "5375"; repStart "-2"; chr11 rmsk exon 38066718 38066963 650 - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2500"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "4903"; repStart "-516"; chr11 rmsk exon 38067020 38067652 2767 - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2500"; repClass "LTR"; repEnd "4736"; repFamily "ERVL"; repLeft "4023"; repStart "-931"; chr11 rmsk exon 38067960 38068359 2767 - . gene_id "ERVLE_11p12a"; transcript_id "ERVLE_11p12a"; locus "ERVLE_11p12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2500"; repClass "LTR"; repEnd "4022"; repFamily "ERVL"; repLeft "3622"; repStart "-1645"; ### ERVLE_11p12b ### chr11 rmsk gene 38072516 38074217 . - . gene_id "ERVLE_11p12b"; transcript_id "ERVLE_11p12b"; locus "ERVLE_11p12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2501"; model_cov "1757"; model_pct "31.0"; chr11 rmsk exon 38072516 38073562 2525 - . gene_id "ERVLE_11p12b"; transcript_id "ERVLE_11p12b"; locus "ERVLE_11p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2501"; repClass "LTR"; repEnd "3126"; repFamily "ERVL"; repLeft "2031"; repStart "-2541"; chr11 rmsk exon 38073570 38074217 1686 - . gene_id "ERVLE_11p12b"; transcript_id "ERVLE_11p12b"; locus "ERVLE_11p12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2501"; repClass "LTR"; repEnd "1764"; repFamily "ERVL"; repLeft "1102"; repStart "-3903"; ### HERVL40_11p12 ### chr11 rmsk gene 38330482 38333787 . + . gene_id "HERVL40_11p12"; transcript_id "HERVL40_11p12"; locus "HERVL40_11p12"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0293"; model_cov "1807"; model_pct "32.7"; chr11 rmsk exon 38330482 38330980 1604 + . gene_id "HERVL40_11p12"; transcript_id "HERVL40_11p12"; locus "HERVL40_11p12"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0293"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 38331142 38331373 596 + . gene_id "HERVL40_11p12"; transcript_id "HERVL40_11p12"; locus "HERVL40_11p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0293"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-5111"; repStart "198"; chr11 rmsk exon 38332190 38333487 3366 + . gene_id "HERVL40_11p12"; transcript_id "HERVL40_11p12"; locus "HERVL40_11p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0293"; repClass "LTR"; repEnd "2886"; repFamily "ERVL"; repLeft "-2644"; repStart "1593"; chr11 rmsk exon 38333488 38333787 1212 + . gene_id "HERVL40_11p12"; transcript_id "HERVL40_11p12"; locus "HERVL40_11p12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0293"; repClass "LTR"; repEnd "3302"; repFamily "ERVL"; repLeft "-2228"; repStart "3009"; ### HERVL_11p12b ### chr11 rmsk gene 38533109 38538599 . - . gene_id "HERVL_11p12b"; transcript_id "HERVL_11p12b"; locus "HERVL_11p12b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0901"; model_cov "4949"; model_pct "87.5"; chr11 rmsk exon 38533109 38533775 21623 - . gene_id "HERVL_11p12b"; transcript_id "HERVL_11p12b"; locus "HERVL_11p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0901"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "4223"; repStart "-781"; chr11 rmsk exon 38533834 38538170 31654 - . gene_id "HERVL_11p12b"; transcript_id "HERVL_11p12b"; locus "HERVL_11p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0901"; repClass "LTR"; repEnd "4300"; repFamily "ERVL"; repLeft "1"; repStart "-1354"; chr11 rmsk exon 38538171 38538599 2782 - . gene_id "HERVL_11p12b"; transcript_id "HERVL_11p12b"; locus "HERVL_11p12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0901"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVW_11p12 ### chr11 rmsk gene 38601589 38607240 . + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0215"; model_cov "5526"; model_pct "64.1"; chr11 rmsk exon 38601589 38602352 4766 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 38602353 38603056 4769 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-7935"; repStart "2"; chr11 rmsk exon 38603288 38604251 7612 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "1056"; chr11 rmsk exon 38604235 38606147 9986 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-2610"; repStart "2430"; chr11 rmsk exon 38606173 38606465 2242 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr11 rmsk exon 38606466 38607240 4893 + . gene_id "HERVW_11p12"; transcript_id "HERVW_11p12"; locus "HERVW_11p12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0215"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_11p12c ### chr11 rmsk gene 38627315 38632102 . + . gene_id "HERVL_11p12c"; transcript_id "HERVL_11p12c"; locus "HERVL_11p12c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0902"; model_cov "4283"; model_pct "75.8"; chr11 rmsk exon 38627315 38627724 3018 + . gene_id "HERVL_11p12c"; transcript_id "HERVL_11p12c"; locus "HERVL_11p12c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0902"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr11 rmsk exon 38627781 38627832 256 + . gene_id "HERVL_11p12c"; transcript_id "HERVL_11p12c"; locus "HERVL_11p12c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0902"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "399"; chr11 rmsk exon 38627834 38631429 26866 + . gene_id "HERVL_11p12c"; transcript_id "HERVL_11p12c"; locus "HERVL_11p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0902"; repClass "LTR"; repEnd "3599"; repFamily "ERVL"; repLeft "-2055"; repStart "2"; chr11 rmsk exon 38631418 38632102 5395 + . gene_id "HERVL_11p12c"; transcript_id "HERVL_11p12c"; locus "HERVL_11p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0902"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "-1459"; repStart "3509"; ### HERVL_11p12d ### chr11 rmsk gene 39125839 39131643 . + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0903"; model_cov "4843"; model_pct "85.7"; chr11 rmsk exon 39125839 39125931 607 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "93"; repFamily "ERVL"; repLeft "-360"; repStart "1"; chr11 rmsk exon 39125932 39129045 36897 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "3919"; repFamily "ERVL"; repLeft "-1735"; repStart "810"; chr11 rmsk exon 39129361 39131118 36897 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3920"; chr11 rmsk exon 39131121 39131495 2413 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "6"; chr11 rmsk exon 39131520 39131559 327 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-54"; repStart "355"; chr11 rmsk exon 39131591 39131643 384 + . gene_id "HERVL_11p12d"; transcript_id "HERVL_11p12d"; locus "HERVL_11p12d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0903"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### LTR57_11p12 ### chr11 rmsk gene 39279222 39280505 . + . gene_id "LTR57_11p12"; transcript_id "LTR57_11p12"; locus "LTR57_11p12"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0124"; model_cov "1285"; model_pct "24.1"; chr11 rmsk exon 39279222 39279534 5302 + . gene_id "LTR57_11p12"; transcript_id "LTR57_11p12"; locus "LTR57_11p12"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0124"; repClass "LTR"; repEnd "647"; repFamily "ERVL"; repLeft "-4696"; repStart "303"; chr11 rmsk exon 39279569 39280505 5302 + . gene_id "LTR57_11p12"; transcript_id "LTR57_11p12"; locus "LTR57_11p12"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0124"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "-3754"; repStart "648"; ### HERVL18_11p12b ### chr11 rmsk gene 39339779 39344111 . - . gene_id "HERVL18_11p12b"; transcript_id "HERVL18_11p12b"; locus "HERVL18_11p12b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0108"; model_cov "4043"; model_pct "66.9"; chr11 rmsk exon 39339779 39340117 2053 - . gene_id "HERVL18_11p12b"; transcript_id "HERVL18_11p12b"; locus "HERVL18_11p12b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0108"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 39340119 39344111 25713 - . gene_id "HERVL18_11p12b"; transcript_id "HERVL18_11p12b"; locus "HERVL18_11p12b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0108"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "2004"; repStart "0"; ### HERV9_11p12 ### chr11 rmsk gene 39560214 39567289 . + . gene_id "HERV9_11p12"; transcript_id "HERV9_11p12"; locus "HERV9_11p12"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0131"; model_cov "7056"; model_pct "83.6"; chr11 rmsk exon 39560214 39561248 5432 + . gene_id "HERV9_11p12"; transcript_id "HERV9_11p12"; locus "HERV9_11p12"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0131"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 39561249 39566127 16908 + . gene_id "HERV9_11p12"; transcript_id "HERV9_11p12"; locus "HERV9_11p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0131"; repClass "LTR"; repEnd "8296"; repFamily "ERV1"; repLeft "-140"; repStart "1346"; chr11 rmsk exon 39566100 39566205 865 + . gene_id "HERV9_11p12"; transcript_id "HERV9_11p12"; locus "HERV9_11p12"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0131"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "8330"; chr11 rmsk exon 39566206 39567289 4948 + . gene_id "HERV9_11p12"; transcript_id "HERV9_11p12"; locus "HERV9_11p12"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0131"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "-352"; ### HERVH_11p12b ### chr11 rmsk gene 39734126 39741063 . + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0857"; model_cov "5737"; model_pct "74.4"; chr11 rmsk exon 39734126 39734557 3391 + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0857"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 39734558 39739803 15405 + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0857"; repClass "LTR"; repEnd "4915"; repFamily "ERV1"; repLeft "-2798"; repStart "1"; chr11 rmsk exon 39739801 39740067 1460 + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0857"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5749"; chr11 rmsk exon 39740061 39740631 3525 + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0857"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr11 rmsk exon 39740632 39741063 3303 + . gene_id "HERVH_11p12b"; transcript_id "HERVH_11p12b"; locus "HERVH_11p12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0857"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_11p12a ### chr11 rmsk gene 39965720 39968820 . + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0082"; model_cov "918"; model_pct "29.7"; chr11 rmsk exon 39965720 39966445 3729 + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0082"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 39966447 39966589 615 + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0082"; repClass "LTR"; repEnd "134"; repFamily "ERV1"; repLeft "-2954"; repStart "2"; chr11 rmsk exon 39966589 39967186 3874 + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0082"; repClass "LTR"; repEnd "1241"; repFamily "ERV1"; repLeft "-1847"; repStart "644"; chr11 rmsk exon 39967469 39968169 3874 + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0082"; repClass "LTR"; repEnd "1431"; repFamily "ERV1"; repLeft "-1657"; repStart "1242"; chr11 rmsk exon 39968170 39968820 3868 + . gene_id "HUERSP2_11p12a"; transcript_id "HUERSP2_11p12a"; locus "HUERSP2_11p12a"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0082"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_11p12b ### chr11 rmsk gene 40099468 40105610 . + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0259"; model_cov "6240"; model_pct "100.0"; chr11 rmsk exon 40099468 40099818 1468 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0259"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 40099828 40100434 2072 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0259"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "12"; chr11 rmsk exon 40100822 40101731 6638 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0259"; repClass "LTR"; repEnd "2373"; repFamily "ERV1"; repLeft "-2844"; repStart "1331"; chr11 rmsk exon 40102032 40102417 6638 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0259"; repClass "LTR"; repEnd "2754"; repFamily "ERV1"; repLeft "-2463"; repStart "2375"; chr11 rmsk exon 40102801 40105251 17096 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0259"; repClass "LTR"; repEnd "4927"; repFamily "ERV1"; repLeft "-290"; repStart "796"; chr11 rmsk exon 40105252 40105610 1518 + . gene_id "MER61_11p12b"; transcript_id "MER61_11p12b"; locus "MER61_11p12b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0259"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11p12b ### chr11 rmsk gene 40562670 40565752 . + . gene_id "ERV316A3_11p12b"; transcript_id "ERV316A3_11p12b"; locus "ERV316A3_11p12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1940"; model_cov "1947"; model_pct "37.3"; chr11 rmsk exon 40562670 40563118 1080 + . gene_id "ERV316A3_11p12b"; transcript_id "ERV316A3_11p12b"; locus "ERV316A3_11p12b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1940"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-1"; repStart "23"; chr11 rmsk exon 40563300 40564556 3189 + . gene_id "ERV316A3_11p12b"; transcript_id "ERV316A3_11p12b"; locus "ERV316A3_11p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1940"; repClass "LTR"; repEnd "1369"; repFamily "ERVL"; repLeft "-3857"; repStart "95"; chr11 rmsk exon 40564641 40565261 1665 + . gene_id "ERV316A3_11p12b"; transcript_id "ERV316A3_11p12b"; locus "ERV316A3_11p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1940"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4553"; chr11 rmsk exon 40565262 40565752 1042 + . gene_id "ERV316A3_11p12b"; transcript_id "ERV316A3_11p12b"; locus "ERV316A3_11p12b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1940"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HUERSP2_11p12b ### chr11 rmsk gene 41790342 41794076 . + . gene_id "HUERSP2_11p12b"; transcript_id "HUERSP2_11p12b"; locus "HUERSP2_11p12b"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0083"; model_cov "3004"; model_pct "97.3"; chr11 rmsk exon 41790342 41791143 4778 + . gene_id "HUERSP2_11p12b"; transcript_id "HUERSP2_11p12b"; locus "HUERSP2_11p12b"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0083"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; chr11 rmsk exon 41791144 41791275 500 + . gene_id "HUERSP2_11p12b"; transcript_id "HUERSP2_11p12b"; locus "HUERSP2_11p12b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0083"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "1"; chr11 rmsk exon 41791301 41794076 14523 + . gene_id "HUERSP2_11p12b"; transcript_id "HUERSP2_11p12b"; locus "HUERSP2_11p12b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0083"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "210"; ### MER101_11p12a ### chr11 rmsk gene 41809644 41812789 . - . gene_id "MER101_11p12a"; transcript_id "MER101_11p12a"; locus "MER101_11p12a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0270"; model_cov "2796"; model_pct "42.1"; chr11 rmsk exon 41809644 41810066 1971 - . gene_id "MER101_11p12a"; transcript_id "MER101_11p12a"; locus "MER101_11p12a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0270"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 41810067 41811205 3045 - . gene_id "MER101_11p12a"; transcript_id "MER101_11p12a"; locus "MER101_11p12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0270"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "5375"; repStart "0"; chr11 rmsk exon 41811539 41812462 3045 - . gene_id "MER101_11p12a"; transcript_id "MER101_11p12a"; locus "MER101_11p12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0270"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "4235"; repStart "-1228"; chr11 rmsk exon 41812446 41812789 5793 - . gene_id "MER101_11p12a"; transcript_id "MER101_11p12a"; locus "MER101_11p12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0270"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "3429"; repStart "-2854"; ### MER101_11p12b ### chr11 rmsk gene 41813093 41817546 . - . gene_id "MER101_11p12b"; transcript_id "MER101_11p12b"; locus "MER101_11p12b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0271"; model_cov "3648"; model_pct "54.9"; chr11 rmsk exon 41813093 41816747 5793 - . gene_id "MER101_11p12b"; transcript_id "MER101_11p12b"; locus "MER101_11p12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0271"; repClass "LTR"; repEnd "4028"; repFamily "ERV1"; repLeft "380"; repStart "-2611"; chr11 rmsk exon 41817110 41817546 2120 - . gene_id "MER101_11p12b"; transcript_id "MER101_11p12b"; locus "MER101_11p12b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0271"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_11p12c ### chr11 rmsk gene 41879183 41883026 . - . gene_id "ERV316A3_11p12c"; transcript_id "ERV316A3_11p12c"; locus "ERV316A3_11p12c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1941"; model_cov "2231"; model_pct "42.7"; chr11 rmsk exon 41879183 41879837 2027 - . gene_id "ERV316A3_11p12c"; transcript_id "ERV316A3_11p12c"; locus "ERV316A3_11p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1941"; repClass "LTR"; repEnd "4229"; repFamily "ERVL"; repLeft "3544"; repStart "-997"; chr11 rmsk exon 41880975 41881964 1627 - . gene_id "ERV316A3_11p12c"; transcript_id "ERV316A3_11p12c"; locus "ERV316A3_11p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1941"; repClass "LTR"; repEnd "2859"; repFamily "ERVL"; repLeft "1861"; repStart "-2367"; chr11 rmsk exon 41882475 41883026 1041 - . gene_id "ERV316A3_11p12c"; transcript_id "ERV316A3_11p12c"; locus "ERV316A3_11p12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1941"; repClass "LTR"; repEnd "1252"; repFamily "ERVL"; repLeft "704"; repStart "-3974"; ### ERV316A3_11p12d ### chr11 rmsk gene 41981100 41982476 . - . gene_id "ERV316A3_11p12d"; transcript_id "ERV316A3_11p12d"; locus "ERV316A3_11p12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1942"; model_cov "990"; model_pct "18.9"; chr11 rmsk exon 41981100 41981322 811 - . gene_id "ERV316A3_11p12d"; transcript_id "ERV316A3_11p12d"; locus "ERV316A3_11p12d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1942"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "123"; repStart "-94"; chr11 rmsk exon 41981457 41982476 2315 - . gene_id "ERV316A3_11p12d"; transcript_id "ERV316A3_11p12d"; locus "ERV316A3_11p12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1942"; repClass "LTR"; repEnd "5165"; repFamily "ERVL"; repLeft "4175"; repStart "-61"; ### ERVLE_11p12c ### chr11 rmsk gene 42115361 42117813 . - . gene_id "ERVLE_11p12c"; transcript_id "ERVLE_11p12c"; locus "ERVLE_11p12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2502"; model_cov "1470"; model_pct "25.9"; chr11 rmsk exon 42115361 42115834 705 - . gene_id "ERVLE_11p12c"; transcript_id "ERVLE_11p12c"; locus "ERVLE_11p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2502"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4667"; repStart "-526"; chr11 rmsk exon 42116058 42116355 400 - . gene_id "ERVLE_11p12c"; transcript_id "ERVLE_11p12c"; locus "ERVLE_11p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2502"; repClass "LTR"; repEnd "4388"; repFamily "ERVL"; repLeft "4075"; repStart "-1279"; chr11 rmsk exon 42116762 42116856 364 - . gene_id "ERVLE_11p12c"; transcript_id "ERVLE_11p12c"; locus "ERVLE_11p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2502"; repClass "LTR"; repEnd "3567"; repFamily "ERVL"; repLeft "3478"; repStart "-2100"; chr11 rmsk exon 42117221 42117813 968 - . gene_id "ERVLE_11p12c"; transcript_id "ERVLE_11p12c"; locus "ERVLE_11p12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2502"; repClass "LTR"; repEnd "3129"; repFamily "ERVL"; repLeft "2535"; repStart "-2538"; ### HERVH_11p12c ### chr11 rmsk gene 42120989 42125302 . + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0858"; model_cov "3911"; model_pct "50.7"; chr11 rmsk exon 42120989 42121098 948 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "363"; chr11 rmsk exon 42121099 42123996 15712 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 42123976 42124125 985 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 42124116 42124277 1026 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr11 rmsk exon 42124270 42124880 4629 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr11 rmsk exon 42124881 42125302 3579 + . gene_id "HERVH_11p12c"; transcript_id "HERVH_11p12c"; locus "HERVH_11p12c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0858"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-48"; repStart "1"; ### ERV316A3_11p12g ### chr11 rmsk gene 42324293 42330948 . + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; category "tandem*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1944"; model_cov "1951"; model_pct "37.3"; chr11 rmsk exon 42324293 42324443 619 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-7"; repStart "386"; chr11 rmsk exon 42325022 42325892 924 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "1668"; repFamily "ERVL"; repLeft "-3558"; repStart "730"; chr11 rmsk exon 42325950 42326765 924 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "-2677"; repStart "1669"; chr11 rmsk exon 42326814 42327205 1178 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "39"; chr11 rmsk exon 42327208 42327338 508 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "2362"; repFamily "ERVL"; repLeft "-2864"; repStart "2227"; chr11 rmsk exon 42327701 42327818 508 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "-2738"; repStart "2363"; chr11 rmsk exon 42327987 42328511 566 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "3280"; repFamily "ERVL"; repLeft "-1946"; repStart "2744"; chr11 rmsk exon 42328714 42329108 418 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "3784"; repFamily "ERVL"; repLeft "-1442"; repStart "3161"; chr11 rmsk exon 42330425 42330948 710 + . gene_id "ERV316A3_11p12g"; transcript_id "ERV316A3_11p12g"; locus "ERV316A3_11p12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1944"; repClass "LTR"; repEnd "4899"; repFamily "ERVL"; repLeft "-327"; repStart "4367"; ### HERVL_11p12e ### chr11 rmsk gene 42385711 42388705 . + . gene_id "HERVL_11p12e"; transcript_id "HERVL_11p12e"; locus "HERVL_11p12e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0904"; model_cov "2337"; model_pct "41.3"; chr11 rmsk exon 42385711 42385964 1695 + . gene_id "HERVL_11p12e"; transcript_id "HERVL_11p12e"; locus "HERVL_11p12e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0904"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "1"; chr11 rmsk exon 42385970 42388266 17652 + . gene_id "HERVL_11p12e"; transcript_id "HERVL_11p12e"; locus "HERVL_11p12e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0904"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3317"; chr11 rmsk exon 42388267 42388705 2855 + . gene_id "HERVL_11p12e"; transcript_id "HERVL_11p12e"; locus "HERVL_11p12e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0904"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_11p12e ### chr11 rmsk gene 42653699 42658499 . - . gene_id "ERV316A3_11p12e"; transcript_id "ERV316A3_11p12e"; locus "ERV316A3_11p12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1945"; model_cov "1871"; model_pct "35.8"; chr11 rmsk exon 42653699 42654232 931 - . gene_id "ERV316A3_11p12e"; transcript_id "ERV316A3_11p12e"; locus "ERV316A3_11p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1945"; repClass "LTR"; repEnd "4510"; repFamily "ERVL"; repLeft "3976"; repStart "-716"; chr11 rmsk exon 42656252 42657606 2968 - . gene_id "ERV316A3_11p12e"; transcript_id "ERV316A3_11p12e"; locus "ERV316A3_11p12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1945"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "2807"; repStart "-1082"; chr11 rmsk exon 42658034 42658499 1426 - . gene_id "ERV316A3_11p12e"; transcript_id "ERV316A3_11p12e"; locus "ERV316A3_11p12e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1945"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "2"; repStart "-1"; ### ERV316A3_11p12f ### chr11 rmsk gene 42788248 42789944 . - . gene_id "ERV316A3_11p12f"; transcript_id "ERV316A3_11p12f"; locus "ERV316A3_11p12f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1946"; model_cov "1477"; model_pct "28.3"; chr11 rmsk exon 42788248 42788851 2153 - . gene_id "ERV316A3_11p12f"; transcript_id "ERV316A3_11p12f"; locus "ERV316A3_11p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1946"; repClass "LTR"; repEnd "3518"; repFamily "ERVL"; repLeft "2882"; repStart "-1708"; chr11 rmsk exon 42789148 42789373 2153 - . gene_id "ERV316A3_11p12f"; transcript_id "ERV316A3_11p12f"; locus "ERV316A3_11p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1946"; repClass "LTR"; repEnd "2881"; repFamily "ERVL"; repLeft "2633"; repStart "-2345"; chr11 rmsk exon 42789364 42789944 1463 - . gene_id "ERV316A3_11p12f"; transcript_id "ERV316A3_11p12f"; locus "ERV316A3_11p12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1946"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "720"; repStart "-3913"; ### HERVK11D_11p12 ### chr11 rmsk gene 43161739 43168627 . - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0017"; model_cov "5156"; model_pct "66.5"; chr11 rmsk exon 43161739 43162612 7211 - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0017"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 43162613 43164652 17279 - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0017"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "5711"; repStart "0"; chr11 rmsk exon 43164647 43166900 19183 - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0017"; repClass "LTR"; repEnd "5320"; repFamily "ERVK"; repLeft "3066"; repStart "-2432"; chr11 rmsk exon 43166894 43167754 7295 - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0017"; repClass "LTR"; repEnd "862"; repFamily "ERVK"; repLeft "1"; repStart "-6890"; chr11 rmsk exon 43167755 43168627 6935 - . gene_id "HERVK11D_11p12"; transcript_id "HERVK11D_11p12"; locus "HERVK11D_11p12"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0017"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_11p11.2 ### chr11 rmsk gene 43524498 43528497 . + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1177"; model_cov "1478"; model_pct "25.9"; chr11 rmsk exon 43524498 43524887 793 + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1177"; repClass "LTR"; repEnd "644"; repFamily "ERVL"; repLeft "-5070"; repStart "301"; chr11 rmsk exon 43525116 43525257 286 + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1177"; repClass "LTR"; repEnd "1279"; repFamily "ERVL"; repLeft "-4435"; repStart "1123"; chr11 rmsk exon 43527366 43527498 467 + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1177"; repClass "LTR"; repEnd "1659"; repFamily "ERVL"; repLeft "-4055"; repStart "1526"; chr11 rmsk exon 43527580 43528056 1254 + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1177"; repClass "LTR"; repEnd "2345"; repFamily "ERVL"; repLeft "-3369"; repStart "1771"; chr11 rmsk exon 43528295 43528497 664 + . gene_id "ERVLB4_11p11.2"; transcript_id "ERVLB4_11p11.2"; locus "ERVLB4_11p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1177"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "-3110"; repStart "2332"; ### ERVLE_11p11.2a ### chr11 rmsk gene 43758365 43758897 . - . gene_id "ERVLE_11p11.2a"; transcript_id "ERVLE_11p11.2a"; locus "ERVLE_11p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2504"; model_cov "567"; model_pct "10.0"; chr11 rmsk exon 43758365 43758897 642 - . gene_id "ERVLE_11p11.2a"; transcript_id "ERVLE_11p11.2a"; locus "ERVLE_11p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2504"; repClass "LTR"; repEnd "618"; repFamily "ERVL"; repLeft "51"; repStart "-5049"; ### HERVE_11p11.2 ### chr11 rmsk gene 43783992 43785498 . - . gene_id "HERVE_11p11.2"; transcript_id "HERVE_11p11.2"; locus "HERVE_11p11.2"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0105"; model_cov "994"; model_pct "12.7"; chr11 rmsk exon 43783992 43784301 3133 - . gene_id "HERVE_11p11.2"; transcript_id "HERVE_11p11.2"; locus "HERVE_11p11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0105"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "192"; repStart "0"; chr11 rmsk exon 43784348 43784498 3133 - . gene_id "HERVE_11p11.2"; transcript_id "HERVE_11p11.2"; locus "HERVE_11p11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0105"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "2"; repStart "-310"; chr11 rmsk exon 43784499 43785206 2161 - . gene_id "HERVE_11p11.2"; transcript_id "HERVE_11p11.2"; locus "HERVE_11p11.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0105"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "7020"; repStart "-2"; chr11 rmsk exon 43785295 43785498 1144 - . gene_id "HERVE_11p11.2"; transcript_id "HERVE_11p11.2"; locus "HERVE_11p11.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0105"; repClass "LTR"; repEnd "5682"; repFamily "ERV1"; repLeft "5479"; repStart "-2131"; ### ERVLE_11p11.2b ### chr11 rmsk gene 43874661 43878914 . - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2505"; model_cov "3216"; model_pct "56.7"; chr11 rmsk exon 43874661 43874871 406 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "4996"; repStart "-463"; chr11 rmsk exon 43874869 43875603 2661 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "4825"; repFamily "ERVL"; repLeft "4037"; repStart "-842"; chr11 rmsk exon 43875633 43875861 654 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "2750"; repFamily "ERVL"; repLeft "2510"; repStart "-2917"; chr11 rmsk exon 43876355 43876785 4789 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "2067"; repStart "-3178"; chr11 rmsk exon 43877110 43877376 4789 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "2066"; repFamily "ERVL"; repLeft "1801"; repStart "-3601"; chr11 rmsk exon 43877650 43878914 4789 - . gene_id "ERVLE_11p11.2b"; transcript_id "ERVLE_11p11.2b"; locus "ERVLE_11p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2505"; repClass "LTR"; repEnd "1800"; repFamily "ERVL"; repLeft "507"; repStart "-3867"; ### ERVLE_11p11.2c ### chr11 rmsk gene 44100274 44102262 . + . gene_id "ERVLE_11p11.2c"; transcript_id "ERVLE_11p11.2c"; locus "ERVLE_11p11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2506"; model_cov "1144"; model_pct "20.2"; chr11 rmsk exon 44100274 44100349 266 + . gene_id "ERVLE_11p11.2c"; transcript_id "ERVLE_11p11.2c"; locus "ERVLE_11p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2506"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "-5143"; repStart "448"; chr11 rmsk exon 44100655 44101013 811 + . gene_id "ERVLE_11p11.2c"; transcript_id "ERVLE_11p11.2c"; locus "ERVLE_11p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2506"; repClass "LTR"; repEnd "773"; repFamily "ERVL"; repLeft "-4894"; repStart "404"; chr11 rmsk exon 44101575 44102262 936 + . gene_id "ERVLE_11p11.2c"; transcript_id "ERVLE_11p11.2c"; locus "ERVLE_11p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2506"; repClass "LTR"; repEnd "1912"; repFamily "ERVL"; repLeft "-3755"; repStart "1213"; ### HERVL_11p11.2a ### chr11 rmsk gene 44414860 44416917 . + . gene_id "HERVL_11p11.2a"; transcript_id "HERVL_11p11.2a"; locus "HERVL_11p11.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0905"; model_cov "1378"; model_pct "24.4"; chr11 rmsk exon 44414860 44415261 2793 + . gene_id "HERVL_11p11.2a"; transcript_id "HERVL_11p11.2a"; locus "HERVL_11p11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0905"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr11 rmsk exon 44415457 44415524 282 + . gene_id "HERVL_11p11.2a"; transcript_id "HERVL_11p11.2a"; locus "HERVL_11p11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0905"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "378"; chr11 rmsk exon 44415525 44416917 11194 + . gene_id "HERVL_11p11.2a"; transcript_id "HERVL_11p11.2a"; locus "HERVL_11p11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0905"; repClass "LTR"; repEnd "1379"; repFamily "ERVL"; repLeft "-4275"; repStart "1"; ### ERV316A3_11p11.2 ### chr11 rmsk gene 44492028 44495380 . + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1947"; model_cov "2565"; model_pct "49.1"; chr11 rmsk exon 44492028 44492452 1558 + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1947"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr11 rmsk exon 44492774 44493247 777 + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1947"; repClass "LTR"; repEnd "837"; repFamily "ERVL"; repLeft "-4389"; repStart "351"; chr11 rmsk exon 44493267 44493536 979 + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1947"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "-3137"; repStart "1819"; chr11 rmsk exon 44493524 44494352 2214 + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1947"; repClass "LTR"; repEnd "2889"; repFamily "ERVL"; repLeft "-2337"; repStart "1977"; chr11 rmsk exon 44494385 44495380 2776 + . gene_id "ERV316A3_11p11.2"; transcript_id "ERV316A3_11p11.2"; locus "ERV316A3_11p11.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1947"; repClass "LTR"; repEnd "4308"; repFamily "ERVL"; repLeft "-918"; repStart "3411"; ### HERVL_11p11.2b ### chr11 rmsk gene 44544093 44550636 . + . gene_id "HERVL_11p11.2b"; transcript_id "HERVL_11p11.2b"; locus "HERVL_11p11.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0906"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 44544093 44544464 2417 + . gene_id "HERVL_11p11.2b"; transcript_id "HERVL_11p11.2b"; locus "HERVL_11p11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0906"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-32"; repStart "1"; chr11 rmsk exon 44544590 44550255 43992 + . gene_id "HERVL_11p11.2b"; transcript_id "HERVL_11p11.2b"; locus "HERVL_11p11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0906"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 44550256 44550636 2790 + . gene_id "HERVL_11p11.2b"; transcript_id "HERVL_11p11.2b"; locus "HERVL_11p11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0906"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; ### ERVLE_11p11.2d ### chr11 rmsk gene 45111306 45111901 . + . gene_id "ERVLE_11p11.2d"; transcript_id "ERVLE_11p11.2d"; locus "ERVLE_11p11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2507"; model_cov "636"; model_pct "11.2"; chr11 rmsk exon 45111306 45111901 1744 + . gene_id "ERVLE_11p11.2d"; transcript_id "ERVLE_11p11.2d"; locus "ERVLE_11p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2507"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "-677"; repStart "4354"; ### MER4_11p11.2 ### chr11 rmsk gene 48291080 48291868 . + . gene_id "MER4_11p11.2"; transcript_id "MER4_11p11.2"; locus "MER4_11p11.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0528"; model_cov "797"; model_pct "12.1"; chr11 rmsk exon 48291080 48291363 936 + . gene_id "MER4_11p11.2"; transcript_id "MER4_11p11.2"; locus "MER4_11p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0528"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "-3321"; repStart "3004"; chr11 rmsk exon 48291368 48291868 2899 + . gene_id "MER4_11p11.2"; transcript_id "MER4_11p11.2"; locus "MER4_11p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0528"; repClass "LTR"; repEnd "4436"; repFamily "ERV1"; repLeft "-2162"; repStart "3912"; ### PABLA_11p11.2 ### chr11 rmsk gene 48291871 48292432 . + . gene_id "PABLA_11p11.2"; transcript_id "PABLA_11p11.2"; locus "PABLA_11p11.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0101"; model_cov "623"; model_pct "12.4"; chr11 rmsk exon 48291871 48292432 1988 + . gene_id "PABLA_11p11.2"; transcript_id "PABLA_11p11.2"; locus "PABLA_11p11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0101"; repClass "LTR"; repEnd "4765"; repFamily "ERV1"; repLeft "-250"; repStart "4142"; ### HUERSP3B_11p11.2 ### chr11 rmsk gene 48378988 48386173 . - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0090"; model_cov "4770"; model_pct "64.3"; chr11 rmsk exon 48378988 48379635 3930 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 48379638 48380338 3226 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "6705"; repStart "-1"; chr11 rmsk exon 48380369 48382500 7305 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "5615"; repFamily "ERV1"; repLeft "3964"; repStart "-1803"; chr11 rmsk exon 48383171 48383863 6473 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "3069"; repFamily "ERV1"; repLeft "2809"; repStart "-4349"; chr11 rmsk exon 48383858 48385565 3995 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "2378"; repFamily "ERV1"; repLeft "231"; repStart "-5040"; chr11 rmsk exon 48385566 48386173 3560 - . gene_id "HUERSP3B_11p11.2"; transcript_id "HUERSP3B_11p11.2"; locus "HUERSP3B_11p11.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0090"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_11p11.12 ### chr11 rmsk gene 49320583 49326841 . - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0859"; model_cov "5972"; model_pct "77.4"; chr11 rmsk exon 49320583 49320949 2179 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 49320950 49321505 3836 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr11 rmsk exon 49321499 49321923 2248 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr11 rmsk exon 49321915 49323318 7630 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4865"; repStart "-1290"; chr11 rmsk exon 49323313 49323761 2747 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr11 rmsk exon 49323756 49326471 13531 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2"; repStart "-4726"; chr11 rmsk exon 49326475 49326841 2015 - . gene_id "HERVH_11p11.12"; transcript_id "HERVH_11p11.12"; locus "HERVH_11p11.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0859"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3B_11p11.12a ### chr11 rmsk gene 49734692 49739721 . - . gene_id "HUERSP3B_11p11.12a"; transcript_id "HUERSP3B_11p11.12a"; locus "HUERSP3B_11p11.12a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0091"; model_cov "4149"; model_pct "55.9"; chr11 rmsk exon 49734692 49735302 3983 - . gene_id "HUERSP3B_11p11.12a"; transcript_id "HUERSP3B_11p11.12a"; locus "HUERSP3B_11p11.12a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0091"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 49735946 49739721 14610 - . gene_id "HUERSP3B_11p11.12a"; transcript_id "HUERSP3B_11p11.12a"; locus "HUERSP3B_11p11.12a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0091"; repClass "LTR"; repEnd "6946"; repFamily "ERV1"; repLeft "2797"; repStart "-472"; ### HUERSP3B_11p11.12b ### chr11 rmsk gene 49740152 49743469 . - . gene_id "HUERSP3B_11p11.12b"; transcript_id "HUERSP3B_11p11.12b"; locus "HUERSP3B_11p11.12b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0092"; model_cov "2790"; model_pct "37.6"; chr11 rmsk exon 49740152 49741730 14610 - . gene_id "HUERSP3B_11p11.12b"; transcript_id "HUERSP3B_11p11.12b"; locus "HUERSP3B_11p11.12b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0092"; repClass "LTR"; repEnd "6946"; repFamily "ERV1"; repLeft "5209"; repStart "-472"; chr11 rmsk exon 49741757 49742857 11332 - . gene_id "HUERSP3B_11p11.12b"; transcript_id "HUERSP3B_11p11.12b"; locus "HUERSP3B_11p11.12b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0092"; repClass "LTR"; repEnd "1058"; repFamily "ERV1"; repLeft "5"; repStart "-6360"; chr11 rmsk exon 49742863 49743469 3978 - . gene_id "HUERSP3B_11p11.12b"; transcript_id "HUERSP3B_11p11.12b"; locus "HUERSP3B_11p11.12b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0092"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11p11.12 ### chr11 rmsk gene 49894513 49895357 . + . gene_id "ERVLE_11p11.12"; transcript_id "ERVLE_11p11.12"; locus "ERVLE_11p11.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2511"; model_cov "836"; model_pct "14.8"; chr11 rmsk exon 49894513 49894927 904 + . gene_id "ERVLE_11p11.12"; transcript_id "ERVLE_11p11.12"; locus "ERVLE_11p11.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2511"; repClass "LTR"; repEnd "4030"; repFamily "ERVL"; repLeft "-1637"; repStart "3615"; chr11 rmsk exon 49894965 49895357 363 + . gene_id "ERVLE_11p11.12"; transcript_id "ERVLE_11p11.12"; locus "ERVLE_11p11.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2511"; repClass "LTR"; repEnd "4879"; repFamily "ERVL"; repLeft "-788"; repStart "4458"; ### LTR25_11p11.12 ### chr11 rmsk gene 49995075 50001037 . + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0087"; model_cov "5058"; model_pct "70.4"; chr11 rmsk exon 49995075 49996782 4277 + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0087"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "-6928"; repStart "-1730"; chr11 rmsk exon 49996787 49997481 6997 + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0087"; repClass "LTR"; repEnd "2839"; repFamily "ERV1"; repLeft "-4349"; repStart "2579"; chr11 rmsk exon 49998147 50000000 8082 + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0087"; repClass "LTR"; repEnd "5507"; repFamily "ERV1"; repLeft "-1681"; repStart "3755"; chr11 rmsk exon 50000001 50000344 1838 + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0087"; repClass "LTR"; repEnd "5421"; repFamily "ERV1"; repLeft "-1767"; repStart "5077"; chr11 rmsk exon 50000337 50001037 3242 + . gene_id "LTR25_11p11.12"; transcript_id "LTR25_11p11.12"; locus "LTR25_11p11.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0087"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6475"; ### HERVK11_11p11.12a ### chr11 rmsk gene 50438109 50447967 . + . gene_id "HERVK11_11p11.12a"; transcript_id "HERVK11_11p11.12a"; locus "HERVK11_11p11.12a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0069"; model_cov "7764"; model_pct "97.6"; chr11 rmsk exon 50438109 50439169 5274 + . gene_id "HERVK11_11p11.12a"; transcript_id "HERVK11_11p11.12a"; locus "HERVK11_11p11.12a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0069"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 50439170 50445962 38020 + . gene_id "HERVK11_11p11.12a"; transcript_id "HERVK11_11p11.12a"; locus "HERVK11_11p11.12a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0069"; repClass "LTR"; repEnd "6766"; repFamily "ERVK"; repLeft "-1187"; repStart "1"; chr11 rmsk exon 50445946 50446938 7606 + . gene_id "HERVK11_11p11.12a"; transcript_id "HERVK11_11p11.12a"; locus "HERVK11_11p11.12a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0069"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6954"; chr11 rmsk exon 50446939 50447967 5809 + . gene_id "HERVK11_11p11.12a"; transcript_id "HERVK11_11p11.12a"; locus "HERVK11_11p11.12a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0069"; repClass "LTR"; repEnd "1048"; repFamily "ERVK"; repLeft "-23"; repStart "1"; ### HERVK11_11p11.12b ### chr11 rmsk gene 50487846 50491301 . - . gene_id "HERVK11_11p11.12b"; transcript_id "HERVK11_11p11.12b"; locus "HERVK11_11p11.12b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0070"; model_cov "2445"; model_pct "30.7"; chr11 rmsk exon 50487846 50488898 5281 - . gene_id "HERVK11_11p11.12b"; transcript_id "HERVK11_11p11.12b"; locus "HERVK11_11p11.12b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0070"; repClass "LTR"; repEnd "1067"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chr11 rmsk exon 50488899 50489897 7433 - . gene_id "HERVK11_11p11.12b"; transcript_id "HERVK11_11p11.12b"; locus "HERVK11_11p11.12b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0070"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6954"; repStart "0"; chr11 rmsk exon 50489882 50490432 4141 - . gene_id "HERVK11_11p11.12b"; transcript_id "HERVK11_11p11.12b"; locus "HERVK11_11p11.12b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0070"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "6209"; repStart "-1188"; chr11 rmsk exon 50490428 50491301 26941 - . gene_id "HERVK11_11p11.12b"; transcript_id "HERVK11_11p11.12b"; locus "HERVK11_11p11.12b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0070"; repClass "LTR"; repEnd "4162"; repFamily "ERVK"; repLeft "3272"; repStart "-3791"; ### HERVK11_11p11.12c ### chr11 rmsk gene 50491354 50495620 . - . gene_id "HERVK11_11p11.12c"; transcript_id "HERVK11_11p11.12c"; locus "HERVK11_11p11.12c"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0071"; model_cov "3270"; model_pct "41.1"; chr11 rmsk exon 50491354 50494560 26941 - . gene_id "HERVK11_11p11.12c"; transcript_id "HERVK11_11p11.12c"; locus "HERVK11_11p11.12c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0071"; repClass "LTR"; repEnd "4162"; repFamily "ERVK"; repLeft "892"; repStart "-3791"; chr11 rmsk exon 50494561 50495620 5645 - . gene_id "HERVK11_11p11.12c"; transcript_id "HERVK11_11p11.12c"; locus "HERVK11_11p11.12c"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0071"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### HML3_11p11.12a ### chr11 rmsk gene 50508440 50514436 . + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0165"; model_cov "5034"; model_pct "83.6"; chr11 rmsk exon 50508440 50508950 3166 + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0165"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 50508951 50509710 5172 + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0165"; repClass "LTR"; repEnd "775"; repFamily "ERVK"; repLeft "-5246"; repStart "1"; chr11 rmsk exon 50509771 50511681 13325 + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0165"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "836"; chr11 rmsk exon 50511682 50513927 10411 + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0165"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3723"; chr11 rmsk exon 50513928 50514436 3127 + . gene_id "HML3_11p11.12a"; transcript_id "HML3_11p11.12a"; locus "HML3_11p11.12a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0165"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### HML3_11p11.12b ### chr11 rmsk gene 50552849 50554412 . + . gene_id "HML3_11p11.12b"; transcript_id "HML3_11p11.12b"; locus "HML3_11p11.12b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0166"; model_cov "984"; model_pct "16.3"; chr11 rmsk exon 50552849 50553830 7115 + . gene_id "HML3_11p11.12b"; transcript_id "HML3_11p11.12b"; locus "HML3_11p11.12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0166"; repClass "LTR"; repEnd "5592"; repFamily "ERVK"; repLeft "-429"; repStart "4608"; chr11 rmsk exon 50553899 50554412 3404 + . gene_id "HML3_11p11.12b"; transcript_id "HML3_11p11.12b"; locus "HML3_11p11.12b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0166"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11_11p11.12d ### chr11 rmsk gene 50629511 50637577 . - . gene_id "HERVK11_11p11.12d"; transcript_id "HERVK11_11p11.12d"; locus "HERVK11_11p11.12d"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0072"; model_cov "7638"; model_pct "96.0"; chr11 rmsk exon 50629511 50630581 7899 - . gene_id "HERVK11_11p11.12d"; transcript_id "HERVK11_11p11.12d"; locus "HERVK11_11p11.12d"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0072"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 50630582 50635673 26407 - . gene_id "HERVK11_11p11.12d"; transcript_id "HERVK11_11p11.12d"; locus "HERVK11_11p11.12d"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0072"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "1165"; repStart "0"; chr11 rmsk exon 50635674 50636509 4992 - . gene_id "HERVK11_11p11.12d"; transcript_id "HERVK11_11p11.12d"; locus "HERVK11_11p11.12d"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0072"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "1"; repStart "-7102"; chr11 rmsk exon 50636510 50637577 7985 - . gene_id "HERVK11_11p11.12d"; transcript_id "HERVK11_11p11.12d"; locus "HERVK11_11p11.12d"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0072"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_11q11 ### chr11 rmsk gene 54554832 54559820 . - . gene_id "LTR25_11q11"; transcript_id "LTR25_11q11"; locus "LTR25_11q11"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0088"; model_cov "4109"; model_pct "57.2"; chr11 rmsk exon 54554832 54556756 7736 - . gene_id "LTR25_11q11"; transcript_id "LTR25_11q11"; locus "LTR25_11q11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0088"; repClass "LTR"; repEnd "5600"; repFamily "ERV1"; repLeft "3755"; repStart "-1588"; chr11 rmsk exon 54557422 54558108 4125 - . gene_id "LTR25_11q11"; transcript_id "LTR25_11q11"; locus "LTR25_11q11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0088"; repClass "LTR"; repEnd "2839"; repFamily "ERV1"; repLeft "2579"; repStart "-4349"; chr11 rmsk exon 54558094 54559820 4254 - . gene_id "LTR25_11q11"; transcript_id "LTR25_11q11"; locus "LTR25_11q11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0088"; repClass "LTR"; repEnd "274"; repFamily "ERV1"; repLeft "-1730"; repStart "-6914"; ### HERVK11_11q11 ### chr11 rmsk gene 54758680 54766192 . + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0073"; model_cov "5646"; model_pct "71.0"; chr11 rmsk exon 54758680 54759302 3474 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "442"; chr11 rmsk exon 54759380 54759740 2094 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "-7102"; repStart "476"; chr11 rmsk exon 54759741 54760323 2784 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "1165"; chr11 rmsk exon 54760316 54764154 28751 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "2912"; chr11 rmsk exon 54764140 54765134 7825 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr11 rmsk exon 54765135 54766192 6207 + . gene_id "HERVK11_11q11"; transcript_id "HERVK11_11q11"; locus "HERVK11_11q11"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0073"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_11q11a ### chr11 rmsk gene 55353912 55355908 . - . gene_id "ERVLE_11q11a"; transcript_id "ERVLE_11q11a"; locus "ERVLE_11q11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2513"; model_cov "2123"; model_pct "37.5"; chr11 rmsk exon 55353912 55354542 866 - . gene_id "ERVLE_11q11a"; transcript_id "ERVLE_11q11a"; locus "ERVLE_11q11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2513"; repClass "LTR"; repEnd "4997"; repFamily "ERVL"; repLeft "4361"; repStart "-670"; chr11 rmsk exon 55354568 55355908 1482 - . gene_id "ERVLE_11q11a"; transcript_id "ERVLE_11q11a"; locus "ERVLE_11q11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2513"; repClass "LTR"; repEnd "4299"; repFamily "ERVL"; repLeft "2812"; repStart "-1368"; ### ERVLE_11q11b ### chr11 rmsk gene 55380979 55381766 . - . gene_id "ERVLE_11q11b"; transcript_id "ERVLE_11q11b"; locus "ERVLE_11q11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2514"; model_cov "846"; model_pct "14.9"; chr11 rmsk exon 55380979 55381766 1089 - . gene_id "ERVLE_11q11b"; transcript_id "ERVLE_11q11b"; locus "ERVLE_11q11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2514"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "3718"; repStart "-1103"; ### ERVLE_11q11c ### chr11 rmsk gene 55418106 55418941 . - . gene_id "ERVLE_11q11c"; transcript_id "ERVLE_11q11c"; locus "ERVLE_11q11c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2516"; model_cov "613"; model_pct "10.8"; chr11 rmsk exon 55418106 55418296 383 - . gene_id "ERVLE_11q11c"; transcript_id "ERVLE_11q11c"; locus "ERVLE_11q11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2516"; repClass "LTR"; repEnd "4569"; repFamily "ERVL"; repLeft "4370"; repStart "-1098"; chr11 rmsk exon 55418529 55418941 896 - . gene_id "ERVLE_11q11c"; transcript_id "ERVLE_11q11c"; locus "ERVLE_11q11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2516"; repClass "LTR"; repEnd "4029"; repFamily "ERVL"; repLeft "3615"; repStart "-1638"; ### ERVLE_11q11d ### chr11 rmsk gene 55448351 55449240 . - . gene_id "ERVLE_11q11d"; transcript_id "ERVLE_11q11d"; locus "ERVLE_11q11d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2517"; model_cov "1042"; model_pct "18.4"; chr11 rmsk exon 55448351 55448833 512 - . gene_id "ERVLE_11q11d"; transcript_id "ERVLE_11q11d"; locus "ERVLE_11q11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2517"; repClass "LTR"; repEnd "4568"; repFamily "ERVL"; repLeft "3923"; repStart "-1099"; chr11 rmsk exon 55448859 55449240 820 - . gene_id "ERVLE_11q11d"; transcript_id "ERVLE_11q11d"; locus "ERVLE_11q11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2517"; repClass "LTR"; repEnd "4014"; repFamily "ERVL"; repLeft "3617"; repStart "-1653"; ### ERVLE_11q11e ### chr11 rmsk gene 55481533 55482431 . - . gene_id "ERVLE_11q11e"; transcript_id "ERVLE_11q11e"; locus "ERVLE_11q11e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2518"; model_cov "975"; model_pct "17.2"; chr11 rmsk exon 55481533 55481770 480 - . gene_id "ERVLE_11q11e"; transcript_id "ERVLE_11q11e"; locus "ERVLE_11q11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2518"; repClass "LTR"; repEnd "4579"; repFamily "ERVL"; repLeft "4182"; repStart "-1088"; chr11 rmsk exon 55481837 55482019 399 - . gene_id "ERVLE_11q11e"; transcript_id "ERVLE_11q11e"; locus "ERVLE_11q11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2518"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "4079"; repStart "-1406"; chr11 rmsk exon 55482049 55482431 805 - . gene_id "ERVLE_11q11e"; transcript_id "ERVLE_11q11e"; locus "ERVLE_11q11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2518"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "3617"; repStart "-1654"; ### HERVH48_11q11a ### chr11 rmsk gene 55555550 55558477 . + . gene_id "HERVH48_11q11a"; transcript_id "HERVH48_11q11a"; locus "HERVH48_11q11a"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0036"; model_cov "2808"; model_pct "42.2"; chr11 rmsk exon 55555550 55556363 3571 + . gene_id "HERVH48_11q11a"; transcript_id "HERVH48_11q11a"; locus "HERVH48_11q11a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0036"; repClass "LTR"; repEnd "4250"; repFamily "ERV1"; repLeft "-2404"; repStart "3177"; chr11 rmsk exon 55556354 55558030 11295 + . gene_id "HERVH48_11q11a"; transcript_id "HERVH48_11q11a"; locus "HERVH48_11q11a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0036"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "4919"; chr11 rmsk exon 55558031 55558477 2586 + . gene_id "HERVH48_11q11a"; transcript_id "HERVH48_11q11a"; locus "HERVH48_11q11a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0036"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q11 ### chr11 rmsk gene 55559430 55563896 . + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0860"; model_cov "3766"; model_pct "48.8"; chr11 rmsk exon 55559430 55559799 1592 + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0860"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "22"; chr11 rmsk exon 55559800 55560088 1012 + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0860"; repClass "LTR"; repEnd "332"; repFamily "ERV1"; repLeft "-7381"; repStart "1"; chr11 rmsk exon 55560075 55562947 8134 + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0860"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "2100"; chr11 rmsk exon 55562938 55563454 3190 + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0860"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7198"; chr11 rmsk exon 55563455 55563896 2368 + . gene_id "HERVH_11q11"; transcript_id "HERVH_11q11"; locus "HERVH_11q11"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0860"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_11q11 ### chr11 rmsk gene 55573815 55576932 . - . gene_id "MER4_11q11"; transcript_id "MER4_11q11"; locus "MER4_11q11"; category "internal"; intModel "MER4-int"; locid "MER4-int_0530"; model_cov "2316"; model_pct "35.1"; chr11 rmsk exon 55573815 55575777 10667 - . gene_id "MER4_11q11"; transcript_id "MER4_11q11"; locus "MER4_11q11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0530"; repClass "LTR"; repEnd "5950"; repFamily "ERV1"; repLeft "3918"; repStart "-648"; chr11 rmsk exon 55576656 55576932 1606 - . gene_id "MER4_11q11"; transcript_id "MER4_11q11"; locus "MER4_11q11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0530"; repClass "LTR"; repEnd "3021"; repFamily "ERV1"; repLeft "2737"; repStart "-3577"; ### HERVH48_11q11b ### chr11 rmsk gene 55583344 55587752 . + . gene_id "HERVH48_11q11b"; transcript_id "HERVH48_11q11b"; locus "HERVH48_11q11b"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0037"; model_cov "4365"; model_pct "65.6"; chr11 rmsk exon 55583344 55585637 11050 + . gene_id "HERVH48_11q11b"; transcript_id "HERVH48_11q11b"; locus "HERVH48_11q11b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0037"; repClass "LTR"; repEnd "4250"; repFamily "ERV1"; repLeft "-2404"; repStart "1600"; chr11 rmsk exon 55585640 55587325 11663 + . gene_id "HERVH48_11q11b"; transcript_id "HERVH48_11q11b"; locus "HERVH48_11q11b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0037"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "4939"; chr11 rmsk exon 55587326 55587752 2865 + . gene_id "HERVH48_11q11b"; transcript_id "HERVH48_11q11b"; locus "HERVH48_11q11b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0037"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q11 ### chr11 rmsk gene 55653653 55655396 . - . gene_id "ERV316A3_11q11"; transcript_id "ERV316A3_11q11"; locus "ERV316A3_11q11"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1956"; model_cov "1571"; model_pct "30.1"; chr11 rmsk exon 55653653 55654823 1276 - . gene_id "ERV316A3_11q11"; transcript_id "ERV316A3_11q11"; locus "ERV316A3_11q11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1956"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "3894"; repStart "-149"; chr11 rmsk exon 55654922 55655396 585 - . gene_id "ERV316A3_11q11"; transcript_id "ERV316A3_11q11"; locus "ERV316A3_11q11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1956"; repClass "LTR"; repEnd "3333"; repFamily "ERVL"; repLeft "2945"; repStart "-1893"; ### ERVL_11q11 ### chr11 rmsk gene 55691865 55692718 . - . gene_id "ERVL_11q11"; transcript_id "ERVL_11q11"; locus "ERVL_11q11"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0306"; model_cov "885"; model_pct "15.4"; chr11 rmsk exon 55691865 55692718 1266 - . gene_id "ERVL_11q11"; transcript_id "ERVL_11q11"; locus "ERVL_11q11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0306"; repClass "LTR"; repEnd "5484"; repFamily "ERVL"; repLeft "4599"; repStart "-273"; ### MER61_11q12.1a ### chr11 rmsk gene 55856815 55860113 . + . gene_id "MER61_11q12.1a"; transcript_id "MER61_11q12.1a"; locus "MER61_11q12.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0260"; model_cov "5082"; model_pct "97.4"; chr11 rmsk exon 55856815 55857157 1693 + . gene_id "MER61_11q12.1a"; transcript_id "MER61_11q12.1a"; locus "MER61_11q12.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0260"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 55857158 55857718 1609 + . gene_id "MER61_11q12.1a"; transcript_id "MER61_11q12.1a"; locus "MER61_11q12.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0260"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "1"; chr11 rmsk exon 55857714 55860113 11103 + . gene_id "MER61_11q12.1a"; transcript_id "MER61_11q12.1a"; locus "MER61_11q12.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0260"; repClass "LTR"; repEnd "4630"; repFamily "ERV1"; repLeft "-587"; repStart "114"; ### MER61_11q12.1b ### chr11 rmsk gene 55894020 55895855 . + . gene_id "MER61_11q12.1b"; transcript_id "MER61_11q12.1b"; locus "MER61_11q12.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0261"; model_cov "1521"; model_pct "29.2"; chr11 rmsk exon 55894020 55895518 10033 + . gene_id "MER61_11q12.1b"; transcript_id "MER61_11q12.1b"; locus "MER61_11q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0261"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3696"; chr11 rmsk exon 55895519 55895855 1776 + . gene_id "MER61_11q12.1b"; transcript_id "MER61_11q12.1b"; locus "MER61_11q12.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0261"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_11q12.1a ### chr11 rmsk gene 56004358 56005424 . - . gene_id "ERVLB4_11q12.1a"; transcript_id "ERVLB4_11q12.1a"; locus "ERVLB4_11q12.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1183"; model_cov "966"; model_pct "16.9"; chr11 rmsk exon 56004358 56005124 4163 - . gene_id "ERVLB4_11q12.1a"; transcript_id "ERVLB4_11q12.1a"; locus "ERVLB4_11q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1183"; repClass "LTR"; repEnd "2259"; repFamily "ERVL"; repLeft "1484"; repStart "-3455"; chr11 rmsk exon 56005189 56005266 490 - . gene_id "ERVLB4_11q12.1a"; transcript_id "ERVLB4_11q12.1a"; locus "ERVLB4_11q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1183"; repClass "LTR"; repEnd "1416"; repFamily "ERVL"; repLeft "1339"; repStart "-4298"; chr11 rmsk exon 56005316 56005424 402 - . gene_id "ERVLB4_11q12.1a"; transcript_id "ERVLB4_11q12.1a"; locus "ERVLB4_11q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1183"; repClass "LTR"; repEnd "1234"; repFamily "ERVL"; repLeft "1120"; repStart "-4480"; ### ERVLB4_11q12.1b ### chr11 rmsk gene 56008391 56009436 . - . gene_id "ERVLB4_11q12.1b"; transcript_id "ERVLB4_11q12.1b"; locus "ERVLB4_11q12.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1184"; model_cov "1086"; model_pct "19.0"; chr11 rmsk exon 56008391 56009436 4988 - . gene_id "ERVLB4_11q12.1b"; transcript_id "ERVLB4_11q12.1b"; locus "ERVLB4_11q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1184"; repClass "LTR"; repEnd "1112"; repFamily "ERVL"; repLeft "26"; repStart "-4602"; ### HERVL_11q12.1a ### chr11 rmsk gene 56039239 56045298 . + . gene_id "HERVL_11q12.1a"; transcript_id "HERVL_11q12.1a"; locus "HERVL_11q12.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0909"; model_cov "5532"; model_pct "97.8"; chr11 rmsk exon 56039239 56039626 2780 + . gene_id "HERVL_11q12.1a"; transcript_id "HERVL_11q12.1a"; locus "HERVL_11q12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0909"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr11 rmsk exon 56039728 56039788 371 + . gene_id "HERVL_11q12.1a"; transcript_id "HERVL_11q12.1a"; locus "HERVL_11q12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0909"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "393"; chr11 rmsk exon 56039789 56045298 40430 + . gene_id "HERVL_11q12.1a"; transcript_id "HERVL_11q12.1a"; locus "HERVL_11q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0909"; repClass "LTR"; repEnd "5533"; repFamily "ERVL"; repLeft "-121"; repStart "1"; ### ERVLB4_11q12.1c ### chr11 rmsk gene 56311459 56314964 . + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1187"; model_cov "2402"; model_pct "42.0"; chr11 rmsk exon 56311459 56311577 442 + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1187"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "-2281"; repStart "3286"; chr11 rmsk exon 56312059 56313379 10842 + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1187"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "-933"; repStart "3456"; chr11 rmsk exon 56313502 56314415 10842 + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1187"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4782"; chr11 rmsk exon 56314431 56314849 2084 + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1187"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "19"; chr11 rmsk exon 56314933 56314964 2084 + . gene_id "ERVLB4_11q12.1c"; transcript_id "ERVLB4_11q12.1c"; locus "ERVLB4_11q12.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1187"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-9"; repStart "458"; ### HML1_11q12.1 ### chr11 rmsk gene 56327845 56333225 . - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0080"; model_cov "3089"; model_pct "50.7"; chr11 rmsk exon 56327845 56328184 2667 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "343"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr11 rmsk exon 56328188 56328304 693 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr11 rmsk exon 56328367 56328585 1640 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5656"; repStart "-199"; chr11 rmsk exon 56328585 56329221 5055 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4913"; repStart "-544"; chr11 rmsk exon 56329210 56330918 13452 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "3540"; repFamily "ERVK"; repLeft "1827"; repStart "-2556"; chr11 rmsk exon 56332532 56332887 2606 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "1"; repStart "-5735"; chr11 rmsk exon 56332888 56333225 2533 - . gene_id "HML1_11q12.1"; transcript_id "HML1_11q12.1"; locus "HML1_11q12.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0080"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### MER41_11q12.1a ### chr11 rmsk gene 56399846 56400878 . - . gene_id "MER41_11q12.1a"; transcript_id "MER41_11q12.1a"; locus "MER41_11q12.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0364"; model_cov "990"; model_pct "16.6"; chr11 rmsk exon 56399846 56400531 2554 - . gene_id "MER41_11q12.1a"; transcript_id "MER41_11q12.1a"; locus "MER41_11q12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0364"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "3375"; repStart "-1905"; chr11 rmsk exon 56400566 56400878 1984 - . gene_id "MER41_11q12.1a"; transcript_id "MER41_11q12.1a"; locus "MER41_11q12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0364"; repClass "LTR"; repEnd "613"; repFamily "ERV1"; repLeft "289"; repStart "-5333"; ### ERVLB4_11q12.1d ### chr11 rmsk gene 56519295 56521802 . - . gene_id "ERVLB4_11q12.1d"; transcript_id "ERVLB4_11q12.1d"; locus "ERVLB4_11q12.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1188"; model_cov "2063"; model_pct "36.1"; chr11 rmsk exon 56519295 56520794 4221 - . gene_id "ERVLB4_11q12.1d"; transcript_id "ERVLB4_11q12.1d"; locus "ERVLB4_11q12.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1188"; repClass "LTR"; repEnd "2187"; repFamily "ERVL"; repLeft "564"; repStart "-3527"; chr11 rmsk exon 56520809 56521230 2065 - . gene_id "ERVLB4_11q12.1d"; transcript_id "ERVLB4_11q12.1d"; locus "ERVLB4_11q12.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1188"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "1"; repStart "-5273"; chr11 rmsk exon 56521231 56521291 2382 - . gene_id "ERVLB4_11q12.1d"; transcript_id "ERVLB4_11q12.1d"; locus "ERVLB4_11q12.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1188"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "453"; repStart "0"; chr11 rmsk exon 56521319 56521802 2382 - . gene_id "ERVLB4_11q12.1d"; transcript_id "ERVLB4_11q12.1d"; locus "ERVLB4_11q12.1d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1188"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "3"; repStart "-68"; ### HERVL_11q12.1b ### chr11 rmsk gene 56605241 56606837 . + . gene_id "HERVL_11q12.1b"; transcript_id "HERVL_11q12.1b"; locus "HERVL_11q12.1b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0910"; model_cov "1303"; model_pct "23.0"; chr11 rmsk exon 56605241 56605599 2291 + . gene_id "HERVL_11q12.1b"; transcript_id "HERVL_11q12.1b"; locus "HERVL_11q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0910"; repClass "LTR"; repEnd "1284"; repFamily "ERVL"; repLeft "-4370"; repStart "917"; chr11 rmsk exon 56605595 56605884 6315 + . gene_id "HERVL_11q12.1b"; transcript_id "HERVL_11q12.1b"; locus "HERVL_11q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0910"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "-1006"; repStart "4360"; chr11 rmsk exon 56606190 56606837 6315 + . gene_id "HERVL_11q12.1b"; transcript_id "HERVL_11q12.1b"; locus "HERVL_11q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0910"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "-357"; repStart "4649"; ### MER101_11q12.1a ### chr11 rmsk gene 56728325 56733543 . - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0272"; model_cov "5348"; model_pct "80.6"; chr11 rmsk exon 56728325 56728940 2550 - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0272"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6003"; repStart "0"; chr11 rmsk exon 56728940 56730365 2888 - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0272"; repClass "LTR"; repEnd "4583"; repFamily "ERV1"; repLeft "2651"; repStart "-2056"; chr11 rmsk exon 56730666 56730813 2479 - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0272"; repClass "LTR"; repEnd "4418"; repFamily "ERV1"; repLeft "4302"; repStart "-2221"; chr11 rmsk exon 56730805 56731752 4620 - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0272"; repClass "LTR"; repEnd "4726"; repFamily "ERV1"; repLeft "3088"; repStart "-1913"; chr11 rmsk exon 56731932 56733543 2370 - . gene_id "MER101_11q12.1a"; transcript_id "MER101_11q12.1a"; locus "MER101_11q12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0272"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "1736"; repStart "-3877"; ### MER101_11q12.1b ### chr11 rmsk gene 56733861 56735811 . - . gene_id "MER101_11q12.1b"; transcript_id "MER101_11q12.1b"; locus "MER101_11q12.1b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0273"; model_cov "1564"; model_pct "23.6"; chr11 rmsk exon 56733861 56733977 2370 - . gene_id "MER101_11q12.1b"; transcript_id "MER101_11q12.1b"; locus "MER101_11q12.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0273"; repClass "LTR"; repEnd "3611"; repFamily "ERV1"; repLeft "3512"; repStart "-3028"; chr11 rmsk exon 56733974 56735538 3675 - . gene_id "MER101_11q12.1b"; transcript_id "MER101_11q12.1b"; locus "MER101_11q12.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0273"; repClass "LTR"; repEnd "3292"; repFamily "ERV1"; repLeft "1827"; repStart "-3347"; chr11 rmsk exon 56735595 56735811 1085 - . gene_id "MER101_11q12.1b"; transcript_id "MER101_11q12.1b"; locus "MER101_11q12.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0273"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "225"; repStart "0"; ### ERV316A3_11q12.1a ### chr11 rmsk gene 56814563 56816937 . + . gene_id "ERV316A3_11q12.1a"; transcript_id "ERV316A3_11q12.1a"; locus "ERV316A3_11q12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1957"; model_cov "1689"; model_pct "32.3"; chr11 rmsk exon 56814563 56814703 439 + . gene_id "ERV316A3_11q12.1a"; transcript_id "ERV316A3_11q12.1a"; locus "ERV316A3_11q12.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1957"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "-2"; repStart "355"; chr11 rmsk exon 56815219 56816007 793 + . gene_id "ERV316A3_11q12.1a"; transcript_id "ERV316A3_11q12.1a"; locus "ERV316A3_11q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1957"; repClass "LTR"; repEnd "1545"; repFamily "ERVL"; repLeft "-3681"; repStart "751"; chr11 rmsk exon 56816077 56816937 2629 + . gene_id "ERV316A3_11q12.1a"; transcript_id "ERV316A3_11q12.1a"; locus "ERV316A3_11q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1957"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "-2190"; repStart "2141"; ### ERVLE_11q12.1 ### chr11 rmsk gene 56837193 56840326 . + . gene_id "ERVLE_11q12.1"; transcript_id "ERVLE_11q12.1"; locus "ERVLE_11q12.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2526"; model_cov "896"; model_pct "15.8"; chr11 rmsk exon 56837193 56837820 1554 + . gene_id "ERVLE_11q12.1"; transcript_id "ERVLE_11q12.1"; locus "ERVLE_11q12.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2526"; repClass "LTR"; repEnd "4339"; repFamily "ERVL"; repLeft "-1328"; repStart "3725"; chr11 rmsk exon 56840045 56840326 1554 + . gene_id "ERVLE_11q12.1"; transcript_id "ERVLE_11q12.1"; locus "ERVLE_11q12.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2526"; repClass "LTR"; repEnd "4622"; repFamily "ERVL"; repLeft "-1045"; repStart "4340"; ### MER4_11q12.1a ### chr11 rmsk gene 56864902 56872748 . + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0532"; model_cov "6067"; model_pct "92.0"; chr11 rmsk exon 56864902 56865498 4191 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0532"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 56865502 56865600 657 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "-6498"; repStart "1"; chr11 rmsk exon 56866682 56867332 3984 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "34"; chr11 rmsk exon 56867345 56869250 3962 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "923"; chr11 rmsk exon 56869248 56869729 2642 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "4291"; repFamily "ERV1"; repLeft "-2307"; repStart "3815"; chr11 rmsk exon 56869744 56870580 12394 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "5352"; repFamily "ERV1"; repLeft "-1246"; repStart "4508"; chr11 rmsk exon 56870894 56872134 12394 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0532"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5353"; chr11 rmsk exon 56872147 56872748 3944 + . gene_id "MER4_11q12.1a"; transcript_id "MER4_11q12.1a"; locus "MER4_11q12.1a"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0532"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVP71A_11q12.1 ### chr11 rmsk gene 56949868 56952298 . + . gene_id "HERVP71A_11q12.1"; transcript_id "HERVP71A_11q12.1"; locus "HERVP71A_11q12.1"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0054"; model_cov "2081"; model_pct "27.4"; chr11 rmsk exon 56949868 56950322 3387 + . gene_id "HERVP71A_11q12.1"; transcript_id "HERVP71A_11q12.1"; locus "HERVP71A_11q12.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0054"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 56950323 56952298 9291 + . gene_id "HERVP71A_11q12.1"; transcript_id "HERVP71A_11q12.1"; locus "HERVP71A_11q12.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0054"; repClass "LTR"; repEnd "2082"; repFamily "ERV1"; repLeft "-5508"; repStart "1"; ### MER61_11q12.1c ### chr11 rmsk gene 56984335 56985313 . - . gene_id "MER61_11q12.1c"; transcript_id "MER61_11q12.1c"; locus "MER61_11q12.1c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0262"; model_cov "714"; model_pct "13.7"; chr11 rmsk exon 56984335 56984660 1707 - . gene_id "MER61_11q12.1c"; transcript_id "MER61_11q12.1c"; locus "MER61_11q12.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0262"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 56984661 56985313 4450 - . gene_id "MER61_11q12.1c"; transcript_id "MER61_11q12.1c"; locus "MER61_11q12.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0262"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4503"; repStart "0"; ### HUERSP2_11q12.1 ### chr11 rmsk gene 57000039 57003516 . - . gene_id "HUERSP2_11q12.1"; transcript_id "HUERSP2_11q12.1"; locus "HUERSP2_11q12.1"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0085"; model_cov "2668"; model_pct "86.4"; chr11 rmsk exon 57000039 57002713 15215 - . gene_id "HUERSP2_11q12.1"; transcript_id "HUERSP2_11q12.1"; locus "HUERSP2_11q12.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0085"; repClass "LTR"; repEnd "2671"; repFamily "ERV1"; repLeft "3"; repStart "-417"; chr11 rmsk exon 57002716 57003516 4696 - . gene_id "HUERSP2_11q12.1"; transcript_id "HUERSP2_11q12.1"; locus "HUERSP2_11q12.1"; repName "LTR1B"; geneRegion "ltr"; locid "HUERS-P2-int_0085"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_11q12.1c ### chr11 rmsk gene 57650629 57651896 . + . gene_id "HERVL_11q12.1c"; transcript_id "HERVL_11q12.1c"; locus "HERVL_11q12.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0911"; model_cov "831"; model_pct "14.7"; chr11 rmsk exon 57650629 57651452 6148 + . gene_id "HERVL_11q12.1c"; transcript_id "HERVL_11q12.1c"; locus "HERVL_11q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0911"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4823"; chr11 rmsk exon 57651454 57651896 3213 + . gene_id "HERVL_11q12.1c"; transcript_id "HERVL_11q12.1c"; locus "HERVL_11q12.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0911"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "2"; ### MER4B_11q12.1 ### chr11 rmsk gene 57719337 57731650 . + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; category "tandem*"; intModel "MER4B-int"; locid "MER4B-int_0308"; model_cov "2819"; model_pct "41.7"; chr11 rmsk exon 57719337 57719508 1203 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2227"; repFamily "ERV1"; repLeft "-4531"; repStart "2097"; chr11 rmsk exon 57719818 57720005 1203 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2408"; repFamily "ERV1"; repLeft "-4350"; repStart "2228"; chr11 rmsk exon 57720147 57720279 516 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2527"; repFamily "ERV1"; repLeft "-4231"; repStart "2394"; chr11 rmsk exon 57722388 57722834 2592 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2973"; repFamily "ERV1"; repLeft "-3785"; repStart "2486"; chr11 rmsk exon 57723135 57723197 2592 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "3030"; repFamily "ERV1"; repLeft "-3728"; repStart "2974"; chr11 rmsk exon 57723520 57723531 2592 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "3031"; repFamily "ERV1"; repLeft "-3727"; repStart "3031"; chr11 rmsk exon 57723838 57723916 2592 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "3098"; repFamily "ERV1"; repLeft "-3660"; repStart "3031"; chr11 rmsk exon 57723916 57724552 4087 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3423"; chr11 rmsk exon 57724552 57724757 1537 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "4649"; repFamily "ERV1"; repLeft "-2109"; repStart "4452"; chr11 rmsk exon 57725069 57725145 1537 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "4710"; repFamily "ERV1"; repLeft "-2048"; repStart "4650"; chr11 rmsk exon 57725150 57725207 386 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "4860"; repFamily "ERV1"; repLeft "-1898"; repStart "4805"; chr11 rmsk exon 57725241 57725454 4060 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "6086"; repFamily "ERV1"; repLeft "-672"; repStart "5854"; chr11 rmsk exon 57725752 57726131 4060 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "6478"; repFamily "ERV1"; repLeft "-280"; repStart "6087"; chr11 rmsk exon 57726439 57726611 4060 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "-113"; repStart "6479"; chr11 rmsk exon 57727437 57728169 5350 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "754"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr11 rmsk exon 57728390 57729469 5890 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "1159"; repFamily "ERV1"; repLeft "-5599"; repStart "2"; chr11 rmsk exon 57729484 57729825 1668 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2283"; repFamily "ERV1"; repLeft "-4475"; repStart "1916"; chr11 rmsk exon 57730755 57731107 1740 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "2475"; repFamily "ERV1"; repLeft "-4283"; repStart "2095"; chr11 rmsk exon 57731453 57731650 1335 + . gene_id "MER4B_11q12.1"; transcript_id "MER4B_11q12.1"; locus "MER4B_11q12.1"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0308"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "558"; ### PABLA_11q12.1a ### chr11 rmsk gene 57905032 57908276 . - . gene_id "PABLA_11q12.1a"; transcript_id "PABLA_11q12.1a"; locus "PABLA_11q12.1a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0102"; model_cov "3514"; model_pct "70.1"; chr11 rmsk exon 57905032 57906402 5771 - . gene_id "PABLA_11q12.1a"; transcript_id "PABLA_11q12.1a"; locus "PABLA_11q12.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0102"; repClass "LTR"; repEnd "1312"; repFamily "ERV1"; repLeft "-338"; repStart "-3703"; chr11 rmsk exon 57906399 57906452 291 - . gene_id "PABLA_11q12.1a"; transcript_id "PABLA_11q12.1a"; locus "PABLA_11q12.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0102"; repClass "LTR"; repEnd "1289"; repFamily "ERV1"; repLeft "1236"; repStart "-3726"; chr11 rmsk exon 57906449 57906917 4280 - . gene_id "PABLA_11q12.1a"; transcript_id "PABLA_11q12.1a"; locus "PABLA_11q12.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0102"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "480"; repStart "-3929"; chr11 rmsk exon 57907208 57908276 4280 - . gene_id "PABLA_11q12.1a"; transcript_id "PABLA_11q12.1a"; locus "PABLA_11q12.1a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0102"; repClass "LTR"; repEnd "479"; repFamily "ERV1"; repLeft "-726"; repStart "-4536"; ### ERVLB4_11q12.1e ### chr11 rmsk gene 58290435 58291565 . + . gene_id "ERVLB4_11q12.1e"; transcript_id "ERVLB4_11q12.1e"; locus "ERVLB4_11q12.1e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1189"; model_cov "647"; model_pct "11.3"; chr11 rmsk exon 58290435 58290568 495 + . gene_id "ERVLB4_11q12.1e"; transcript_id "ERVLB4_11q12.1e"; locus "ERVLB4_11q12.1e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1189"; repClass "LTR"; repEnd "105"; repFamily "ERVL"; repLeft "-309"; repStart "-30"; chr11 rmsk exon 58290575 58291200 2706 + . gene_id "ERVLB4_11q12.1e"; transcript_id "ERVLB4_11q12.1e"; locus "ERVLB4_11q12.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1189"; repClass "LTR"; repEnd "824"; repFamily "ERVL"; repLeft "-4890"; repStart "177"; chr11 rmsk exon 58291516 58291565 259 + . gene_id "ERVLB4_11q12.1e"; transcript_id "ERVLB4_11q12.1e"; locus "ERVLB4_11q12.1e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1189"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "-45"; repStart "322"; ### ERVL_11q12.1 ### chr11 rmsk gene 58480798 58487822 . + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0307"; model_cov "5577"; model_pct "96.9"; chr11 rmsk exon 58480798 58481259 1945 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 58481261 58481470 17379 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "199"; repFamily "ERVL"; repLeft "-5558"; repStart "2"; chr11 rmsk exon 58481784 58481799 17379 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "214"; repFamily "ERVL"; repLeft "-5543"; repStart "200"; chr11 rmsk exon 58482031 58485479 17379 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "3706"; repFamily "ERVL"; repLeft "-2051"; repStart "215"; chr11 rmsk exon 58485478 58487269 10276 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3882"; chr11 rmsk exon 58487270 58487712 2031 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "471"; repFamily "ERVL"; repLeft "-49"; repStart "1"; chr11 rmsk exon 58487778 58487822 2031 + . gene_id "ERVL_11q12.1"; transcript_id "ERVL_11q12.1"; locus "ERVL_11q12.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0307"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "472"; ### MER4_11q12.1b ### chr11 rmsk gene 58716702 58722729 . - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0533"; model_cov "6144"; model_pct "93.1"; chr11 rmsk exon 58716702 58717150 2771 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0533"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 58717153 58719868 13337 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "2244"; repStart "-3"; chr11 rmsk exon 58719866 58720416 2299 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "3319"; repFamily "ERV1"; repLeft "2737"; repStart "-3279"; chr11 rmsk exon 58720662 58721368 3698 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "1771"; repStart "-4104"; chr11 rmsk exon 58721378 58721714 1391 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "993"; repStart "-5330"; chr11 rmsk exon 58721713 58721762 352 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "837"; repStart "-5712"; chr11 rmsk exon 58721843 58721891 278 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "-669"; repFamily "ERV1"; repLeft "-717"; repStart "-7267"; chr11 rmsk exon 58721898 58722014 716 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0533"; repClass "LTR"; repEnd "-1178"; repFamily "ERV1"; repLeft "-1294"; repStart "-7776"; chr11 rmsk exon 58722268 58722729 2759 - . gene_id "MER4_11q12.1b"; transcript_id "MER4_11q12.1b"; locus "MER4_11q12.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0533"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFRD_11q12.1 ### chr11 rmsk gene 58725540 58727626 . - . gene_id "HERVFRD_11q12.1"; transcript_id "HERVFRD_11q12.1"; locus "HERVFRD_11q12.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0132"; model_cov "1417"; model_pct "19.7"; chr11 rmsk exon 58725540 58726254 3404 - . gene_id "HERVFRD_11q12.1"; transcript_id "HERVFRD_11q12.1"; locus "HERVFRD_11q12.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0132"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "1"; repStart "-24"; chr11 rmsk exon 58726255 58726516 1628 - . gene_id "HERVFRD_11q12.1"; transcript_id "HERVFRD_11q12.1"; locus "HERVFRD_11q12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0132"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6911"; repStart "-8"; chr11 rmsk exon 58726514 58726656 709 - . gene_id "HERVFRD_11q12.1"; transcript_id "HERVFRD_11q12.1"; locus "HERVFRD_11q12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0132"; repClass "LTR"; repEnd "3436"; repFamily "ERV1"; repLeft "3329"; repStart "-3769"; chr11 rmsk exon 58726692 58727626 4775 - . gene_id "HERVFRD_11q12.1"; transcript_id "HERVFRD_11q12.1"; locus "HERVFRD_11q12.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0132"; repClass "LTR"; repEnd "1225"; repFamily "ERV1"; repLeft "201"; repStart "-5980"; ### LTR25_11q12.1 ### chr11 rmsk gene 58740679 58743259 . + . gene_id "LTR25_11q12.1"; transcript_id "LTR25_11q12.1"; locus "LTR25_11q12.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0089"; model_cov "1517"; model_pct "21.1"; chr11 rmsk exon 58740679 58740894 647 + . gene_id "LTR25_11q12.1"; transcript_id "LTR25_11q12.1"; locus "LTR25_11q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0089"; repClass "LTR"; repEnd "2425"; repFamily "ERV1"; repLeft "-4763"; repStart "2212"; chr11 rmsk exon 58741163 58742489 2997 + . gene_id "LTR25_11q12.1"; transcript_id "LTR25_11q12.1"; locus "LTR25_11q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0089"; repClass "LTR"; repEnd "6799"; repFamily "ERV1"; repLeft "-389"; repStart "6208"; chr11 rmsk exon 58742487 58743259 3500 + . gene_id "LTR25_11q12.1"; transcript_id "LTR25_11q12.1"; locus "LTR25_11q12.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0089"; repClass "LTR"; repEnd "7126"; repFamily "ERV1"; repLeft "-62"; repStart "6413"; ### PABLA_11q12.1b ### chr11 rmsk gene 58791840 58797425 . - . gene_id "PABLA_11q12.1b"; transcript_id "PABLA_11q12.1b"; locus "PABLA_11q12.1b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0104"; model_cov "4290"; model_pct "85.5"; chr11 rmsk exon 58791840 58794337 8765 - . gene_id "PABLA_11q12.1b"; transcript_id "PABLA_11q12.1b"; locus "PABLA_11q12.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0104"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "1688"; repStart "0"; chr11 rmsk exon 58794642 58794816 7536 - . gene_id "PABLA_11q12.1b"; transcript_id "PABLA_11q12.1b"; locus "PABLA_11q12.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0104"; repClass "LTR"; repEnd "2422"; repFamily "ERV1"; repLeft "2253"; repStart "-2593"; chr11 rmsk exon 58794810 58795223 1403 - . gene_id "PABLA_11q12.1b"; transcript_id "PABLA_11q12.1b"; locus "PABLA_11q12.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0104"; repClass "LTR"; repEnd "2103"; repFamily "ERV1"; repLeft "1721"; repStart "-2912"; chr11 rmsk exon 58796962 58797425 2198 - . gene_id "PABLA_11q12.1b"; transcript_id "PABLA_11q12.1b"; locus "PABLA_11q12.1b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0104"; repClass "LTR"; repEnd "1567"; repFamily "ERV1"; repLeft "1155"; repStart "-3448"; ### PABLA_11q12.1c ### chr11 rmsk gene 58797556 58798762 . - . gene_id "PABLA_11q12.1c"; transcript_id "PABLA_11q12.1c"; locus "PABLA_11q12.1c"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0105"; model_cov "1119"; model_pct "22.3"; chr11 rmsk exon 58797556 58798762 6783 - . gene_id "PABLA_11q12.1c"; transcript_id "PABLA_11q12.1c"; locus "PABLA_11q12.1c"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0105"; repClass "LTR"; repEnd "1623"; repFamily "ERV1"; repLeft "504"; repStart "-3392"; ### MER4_11q12.1c ### chr11 rmsk gene 58810766 58813913 . + . gene_id "MER4_11q12.1c"; transcript_id "MER4_11q12.1c"; locus "MER4_11q12.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0535"; model_cov "2714"; model_pct "41.1"; chr11 rmsk exon 58810766 58811202 2955 + . gene_id "MER4_11q12.1c"; transcript_id "MER4_11q12.1c"; locus "MER4_11q12.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0535"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "5"; chr11 rmsk exon 58811204 58811865 2528 + . gene_id "MER4_11q12.1c"; transcript_id "MER4_11q12.1c"; locus "MER4_11q12.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0535"; repClass "LTR"; repEnd "818"; repFamily "ERV1"; repLeft "-5780"; repStart "1"; chr11 rmsk exon 58811869 58813167 6991 + . gene_id "MER4_11q12.1c"; transcript_id "MER4_11q12.1c"; locus "MER4_11q12.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0535"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1131"; chr11 rmsk exon 58813415 58813913 2505 + . gene_id "MER4_11q12.1c"; transcript_id "MER4_11q12.1c"; locus "MER4_11q12.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0535"; repClass "LTR"; repEnd "3278"; repFamily "ERV1"; repLeft "-3320"; repStart "2745"; ### MER4_11q12.1d ### chr11 rmsk gene 58823710 58828772 . + . gene_id "MER4_11q12.1d"; transcript_id "MER4_11q12.1d"; locus "MER4_11q12.1d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0536"; model_cov "2731"; model_pct "41.4"; chr11 rmsk exon 58823710 58823842 440 + . gene_id "MER4_11q12.1d"; transcript_id "MER4_11q12.1d"; locus "MER4_11q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0536"; repClass "LTR"; repEnd "4012"; repFamily "ERV1"; repLeft "-2586"; repStart "3877"; chr11 rmsk exon 58825497 58827579 14438 + . gene_id "MER4_11q12.1d"; transcript_id "MER4_11q12.1d"; locus "MER4_11q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0536"; repClass "LTR"; repEnd "6174"; repFamily "ERV1"; repLeft "-424"; repStart "4000"; chr11 rmsk exon 58827872 58828300 14438 + . gene_id "MER4_11q12.1d"; transcript_id "MER4_11q12.1d"; locus "MER4_11q12.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0536"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "6175"; chr11 rmsk exon 58828306 58828772 3252 + . gene_id "MER4_11q12.1d"; transcript_id "MER4_11q12.1d"; locus "MER4_11q12.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0536"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-5"; repStart "1"; ### HERV3_11q12.1 ### chr11 rmsk gene 58917283 58923130 . - . gene_id "HERV3_11q12.1"; transcript_id "HERV3_11q12.1"; locus "HERV3_11q12.1"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0045"; model_cov "5191"; model_pct "61.6"; chr11 rmsk exon 58917283 58917991 4141 - . gene_id "HERV3_11q12.1"; transcript_id "HERV3_11q12.1"; locus "HERV3_11q12.1"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0045"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 58917993 58918407 2258 - . gene_id "HERV3_11q12.1"; transcript_id "HERV3_11q12.1"; locus "HERV3_11q12.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0045"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "8017"; repStart "0"; chr11 rmsk exon 58918401 58921245 16390 - . gene_id "HERV3_11q12.1"; transcript_id "HERV3_11q12.1"; locus "HERV3_11q12.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0045"; repClass "LTR"; repEnd "6513"; repFamily "ERV1"; repLeft "3650"; repStart "-1913"; chr11 rmsk exon 58921245 58923130 10071 - . gene_id "HERV3_11q12.1"; transcript_id "HERV3_11q12.1"; locus "HERV3_11q12.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0045"; repClass "LTR"; repEnd "2588"; repFamily "ERV1"; repLeft "669"; repStart "-5838"; ### HERVKC4_11q12.1 ### chr11 rmsk gene 58924566 58925529 . - . gene_id "HERVKC4_11q12.1"; transcript_id "HERVKC4_11q12.1"; locus "HERVKC4_11q12.1"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0014"; model_cov "902"; model_pct "17.1"; chr11 rmsk exon 58924566 58925529 4611 - . gene_id "HERVKC4_11q12.1"; transcript_id "HERVKC4_11q12.1"; locus "HERVKC4_11q12.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0014"; repClass "LTR"; repEnd "3525"; repFamily "ERVK"; repLeft "2623"; repStart "-1737"; ### HML5_11q12.1 ### chr11 rmsk gene 58925599 58929132 . - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0078"; model_cov "2124"; model_pct "31.1"; chr11 rmsk exon 58925599 58926638 6045 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "4824"; repFamily "ERVK"; repLeft "3676"; repStart "-2013"; chr11 rmsk exon 58926638 58926713 535 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "3550"; repFamily "ERVK"; repLeft "3474"; repStart "-3287"; chr11 rmsk exon 58927115 58927287 799 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "2505"; repFamily "ERVK"; repLeft "2327"; repStart "-4332"; chr11 rmsk exon 58927657 58928383 3487 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "754"; repFamily "ERVK"; repLeft "32"; repStart "-6083"; chr11 rmsk exon 58928451 58928493 240 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "550"; repFamily "ERVK"; repLeft "507"; repStart "-21"; chr11 rmsk exon 58928568 58929132 4460 - . gene_id "HML5_11q12.1"; transcript_id "HML5_11q12.1"; locus "HML5_11q12.1"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0078"; repClass "LTR"; repEnd "564"; repFamily "ERVK"; repLeft "1"; repStart "-7"; ### HML2_11q12.1 ### chr11 rmsk gene 59000009 59005723 . + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0085"; model_cov "5004"; model_pct "66.4"; chr11 rmsk exon 59000009 59000147 654 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "559"; chr11 rmsk exon 59000270 59002749 13680 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "5434"; repFamily "ERVK"; repLeft "-2102"; repStart "2427"; chr11 rmsk exon 59002774 59004639 10154 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5587"; chr11 rmsk exon 59004729 59005723 7568 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_11q12.1 ### chr11 rmsk gene 59157554 59158956 . + . gene_id "HERVL40_11q12.1"; transcript_id "HERVL40_11q12.1"; locus "HERVL40_11q12.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0294"; model_cov "743"; model_pct "13.4"; chr11 rmsk exon 59157554 59157985 1236 + . gene_id "HERVL40_11q12.1"; transcript_id "HERVL40_11q12.1"; locus "HERVL40_11q12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0294"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-4141"; repStart "924"; chr11 rmsk exon 59158682 59158956 518 + . gene_id "HERVL40_11q12.1"; transcript_id "HERVL40_11q12.1"; locus "HERVL40_11q12.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0294"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "-2559"; repStart "2693"; ### ERV316A3_11q12.1b ### chr11 rmsk gene 59159326 59161536 . + . gene_id "ERV316A3_11q12.1b"; transcript_id "ERV316A3_11q12.1b"; locus "ERV316A3_11q12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1960"; model_cov "1822"; model_pct "34.9"; chr11 rmsk exon 59159326 59160509 2802 + . gene_id "ERV316A3_11q12.1b"; transcript_id "ERV316A3_11q12.1b"; locus "ERV316A3_11q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1960"; repClass "LTR"; repEnd "3017"; repFamily "ERVL"; repLeft "-2209"; repStart "1699"; chr11 rmsk exon 59161045 59161536 1533 + . gene_id "ERV316A3_11q12.1b"; transcript_id "ERV316A3_11q12.1b"; locus "ERV316A3_11q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1960"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4580"; ### HERVL_11q12.1d ### chr11 rmsk gene 59276041 59282777 . + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0913"; model_cov "5652"; model_pct "100.0"; chr11 rmsk exon 59276041 59276280 1630 + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0913"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "187"; chr11 rmsk exon 59276281 59279131 38579 + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0913"; repClass "LTR"; repEnd "2861"; repFamily "ERVL"; repLeft "-2793"; repStart "1"; chr11 rmsk exon 59279446 59282226 38579 + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0913"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2862"; chr11 rmsk exon 59282227 59282588 2526 + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0913"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr11 rmsk exon 59282742 59282777 2526 + . gene_id "HERVL_11q12.1d"; transcript_id "HERVL_11q12.1d"; locus "HERVL_11q12.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0913"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; ### MER41_11q12.1b ### chr11 rmsk gene 59291970 59298191 . - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0370"; model_cov "5372"; model_pct "90.3"; chr11 rmsk exon 59291970 59292454 4181 - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0370"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "170"; repStart "0"; chr11 rmsk exon 59292767 59292941 4181 - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0370"; repClass "LTR"; repEnd "169"; repFamily "ERV1"; repLeft "1"; repStart "-465"; chr11 rmsk exon 59292942 59294580 12839 - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0370"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4281"; repStart "0"; chr11 rmsk exon 59294858 59297714 12839 - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0370"; repClass "LTR"; repEnd "4280"; repFamily "ERV1"; repLeft "1080"; repStart "-1666"; chr11 rmsk exon 59297690 59298191 3219 - . gene_id "MER41_11q12.1b"; transcript_id "MER41_11q12.1b"; locus "MER41_11q12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0370"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "126"; repStart "-5313"; ### MER41_11q12.1c ### chr11 rmsk gene 59400895 59405252 . + . gene_id "MER41_11q12.1c"; transcript_id "MER41_11q12.1c"; locus "MER41_11q12.1c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0371"; model_cov "5259"; model_pct "88.4"; chr11 rmsk exon 59400895 59401257 2185 + . gene_id "MER41_11q12.1c"; transcript_id "MER41_11q12.1c"; locus "MER41_11q12.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0371"; repClass "LTR"; repEnd "-1207"; repFamily "ERV1"; repLeft "-7153"; repStart "-1590"; chr11 rmsk exon 59401302 59401575 1872 + . gene_id "MER41_11q12.1c"; transcript_id "MER41_11q12.1c"; locus "MER41_11q12.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0371"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "361"; chr11 rmsk exon 59401572 59405252 12315 + . gene_id "MER41_11q12.1c"; transcript_id "MER41_11q12.1c"; locus "MER41_11q12.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0371"; repClass "LTR"; repEnd "3817"; repFamily "ERV1"; repLeft "-2129"; repStart "-787"; ### MER4_11q12.1e ### chr11 rmsk gene 59814403 59816727 . - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0537"; model_cov "1323"; model_pct "20.1"; chr11 rmsk exon 59814403 59814853 3225 - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0537"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 59814886 59815499 2437 - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0537"; repClass "LTR"; repEnd "1651"; repFamily "ERV1"; repLeft "993"; repStart "-4947"; chr11 rmsk exon 59815586 59815679 535 - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0537"; repClass "LTR"; repEnd "833"; repFamily "ERV1"; repLeft "751"; repStart "-5765"; chr11 rmsk exon 59815756 59816261 2859 - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0537"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "15"; repStart "-6000"; chr11 rmsk exon 59816278 59816727 3331 - . gene_id "MER4_11q12.1e"; transcript_id "MER4_11q12.1e"; locus "MER4_11q12.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0537"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_11q12.1 ### chr11 rmsk gene 59923570 59929756 . + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0167"; model_cov "5523"; model_pct "91.7"; chr11 rmsk exon 59923570 59924058 3710 + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0167"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 59924059 59927980 30156 + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0167"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "1"; chr11 rmsk exon 59928013 59928449 2850 + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0167"; repClass "LTR"; repEnd "3995"; repFamily "ERVK"; repLeft "-2026"; repStart "3242"; chr11 rmsk exon 59928442 59929266 6146 + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0167"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5203"; chr11 rmsk exon 59929267 59929756 3801 + . gene_id "HML3_11q12.1"; transcript_id "HML3_11q12.1"; locus "HML3_11q12.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0167"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HARLEQUIN_11q12.2a ### chr11 rmsk gene 60101382 60108972 . - . gene_id "HARLEQUIN_11q12.2a"; transcript_id "HARLEQUIN_11q12.2a"; locus "HARLEQUIN_11q12.2a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0130"; model_cov "6240"; model_pct "90.5"; chr11 rmsk exon 60101382 60101845 3508 - . gene_id "HARLEQUIN_11q12.2a"; transcript_id "HARLEQUIN_11q12.2a"; locus "HARLEQUIN_11q12.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0130"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 60101846 60106918 36209 - . gene_id "HARLEQUIN_11q12.2a"; transcript_id "HARLEQUIN_11q12.2a"; locus "HARLEQUIN_11q12.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0130"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1807"; repStart "0"; chr11 rmsk exon 60106912 60108044 7539 - . gene_id "HARLEQUIN_11q12.2a"; transcript_id "HARLEQUIN_11q12.2a"; locus "HARLEQUIN_11q12.2a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0130"; repClass "LTR"; repEnd "1414"; repFamily "ERV1"; repLeft "263"; repStart "-5482"; chr11 rmsk exon 60108516 60108972 3378 - . gene_id "HARLEQUIN_11q12.2a"; transcript_id "HARLEQUIN_11q12.2a"; locus "HARLEQUIN_11q12.2a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0130"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL18_11q12.2 ### chr11 rmsk gene 60167847 60169566 . - . gene_id "HERVL18_11q12.2"; transcript_id "HERVL18_11q12.2"; locus "HERVL18_11q12.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0109"; model_cov "1471"; model_pct "24.3"; chr11 rmsk exon 60167847 60169247 6475 - . gene_id "HERVL18_11q12.2"; transcript_id "HERVL18_11q12.2"; locus "HERVL18_11q12.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0109"; repClass "LTR"; repEnd "1472"; repFamily "ERVL"; repLeft "1"; repStart "-4575"; chr11 rmsk exon 60169257 60169566 856 - . gene_id "HERVL18_11q12.2"; transcript_id "HERVL18_11q12.2"; locus "HERVL18_11q12.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0109"; repClass "LTR"; repEnd "342"; repFamily "ERVL"; repLeft "13"; repStart "-15"; ### HARLEQUIN_11q12.2b ### chr11 rmsk gene 60185446 60193188 . + . gene_id "HARLEQUIN_11q12.2b"; transcript_id "HARLEQUIN_11q12.2b"; locus "HARLEQUIN_11q12.2b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0131"; model_cov "6894"; model_pct "100.0"; chr11 rmsk exon 60185446 60185905 3670 + . gene_id "HARLEQUIN_11q12.2b"; transcript_id "HARLEQUIN_11q12.2b"; locus "HARLEQUIN_11q12.2b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0131"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 60185906 60192735 50528 + . gene_id "HARLEQUIN_11q12.2b"; transcript_id "HARLEQUIN_11q12.2b"; locus "HARLEQUIN_11q12.2b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0131"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr11 rmsk exon 60192737 60193188 3518 + . gene_id "HARLEQUIN_11q12.2b"; transcript_id "HARLEQUIN_11q12.2b"; locus "HARLEQUIN_11q12.2b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0131"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_11q12.2 ### chr11 rmsk gene 60216680 60223953 . + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0914"; model_cov "5423"; model_pct "95.9"; chr11 rmsk exon 60216680 60216895 1333 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "233"; repFamily "ERVL"; repLeft "-220"; repStart "1"; chr11 rmsk exon 60216894 60216960 503 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-5"; repStart "382"; chr11 rmsk exon 60217002 60217068 418 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "67"; repFamily "ERVL"; repLeft "-5587"; repStart "1"; chr11 rmsk exon 60217061 60217544 36698 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "779"; repFamily "ERVL"; repLeft "-4875"; repStart "296"; chr11 rmsk exon 60218618 60223498 36698 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "780"; chr11 rmsk exon 60223501 60223953 3243 + . gene_id "HERVL_11q12.2"; transcript_id "HERVL_11q12.2"; locus "HERVL_11q12.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0914"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HUERSP3_11q12.2 ### chr11 rmsk gene 60342306 60348945 . - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0140"; model_cov "5636"; model_pct "63.2"; chr11 rmsk exon 60342306 60342935 4339 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 60342936 60343191 1458 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8659"; repStart "0"; chr11 rmsk exon 60343363 60344161 4962 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "6903"; repFamily "ERV1"; repLeft "6103"; repStart "-2016"; chr11 rmsk exon 60344170 60344924 9215 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "5881"; repFamily "ERV1"; repLeft "5163"; repStart "-3038"; chr11 rmsk exon 60345234 60345829 9215 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "5162"; repFamily "ERV1"; repLeft "4539"; repStart "-3757"; chr11 rmsk exon 60345823 60348945 16227 - . gene_id "HUERSP3_11q12.2"; transcript_id "HUERSP3_11q12.2"; locus "HUERSP3_11q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0140"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "49"; repStart "-5635"; ### ERVLB4_11q12.2a ### chr11 rmsk gene 60421488 60424729 . - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1192"; model_cov "2427"; model_pct "42.5"; chr11 rmsk exon 60421488 60421724 1072 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "174"; repStart "-68"; chr11 rmsk exon 60422011 60422174 846 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "-38"; repStart "-382"; chr11 rmsk exon 60422177 60422465 1395 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5420"; repStart "0"; chr11 rmsk exon 60422493 60422848 2261 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "5325"; repFamily "ERVL"; repLeft "4973"; repStart "-389"; chr11 rmsk exon 60422849 60423819 5721 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "2271"; repStart "-2438"; chr11 rmsk exon 60423812 60424614 4471 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "2352"; repFamily "ERVL"; repLeft "1576"; repStart "-3362"; chr11 rmsk exon 60424615 60424729 630 - . gene_id "ERVLB4_11q12.2a"; transcript_id "ERVLB4_11q12.2a"; locus "ERVLB4_11q12.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1192"; repClass "LTR"; repEnd "118"; repFamily "ERVL"; repLeft "4"; repStart "-438"; ### MER61_11q12.2 ### chr11 rmsk gene 60563473 60565603 . - . gene_id "MER61_11q12.2"; transcript_id "MER61_11q12.2"; locus "MER61_11q12.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0263"; model_cov "972"; model_pct "18.6"; chr11 rmsk exon 60563473 60563915 2473 - . gene_id "MER61_11q12.2"; transcript_id "MER61_11q12.2"; locus "MER61_11q12.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0263"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr11 rmsk exon 60563918 60564419 5652 - . gene_id "MER61_11q12.2"; transcript_id "MER61_11q12.2"; locus "MER61_11q12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0263"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "4686"; repStart "-4"; chr11 rmsk exon 60565163 60565603 5652 - . gene_id "MER61_11q12.2"; transcript_id "MER61_11q12.2"; locus "MER61_11q12.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0263"; repClass "LTR"; repEnd "4685"; repFamily "ERV1"; repLeft "4240"; repStart "-532"; ### ERVLB4_11q12.2b ### chr11 rmsk gene 60654699 60657207 . + . gene_id "ERVLB4_11q12.2b"; transcript_id "ERVLB4_11q12.2b"; locus "ERVLB4_11q12.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1193"; model_cov "2246"; model_pct "39.3"; chr11 rmsk exon 60654699 60655045 5885 + . gene_id "ERVLB4_11q12.2b"; transcript_id "ERVLB4_11q12.2b"; locus "ERVLB4_11q12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1193"; repClass "LTR"; repEnd "4005"; repFamily "ERVL"; repLeft "-1709"; repStart "3653"; chr11 rmsk exon 60655243 60656832 5885 + . gene_id "ERVLB4_11q12.2b"; transcript_id "ERVLB4_11q12.2b"; locus "ERVLB4_11q12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1193"; repClass "LTR"; repEnd "5702"; repFamily "ERVL"; repLeft "-12"; repStart "3808"; chr11 rmsk exon 60656857 60657207 1180 + . gene_id "ERVLB4_11q12.2b"; transcript_id "ERVLB4_11q12.2b"; locus "ERVLB4_11q12.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1193"; repClass "LTR"; repEnd "323"; repFamily "ERVL"; repLeft "-91"; repStart "1"; ### HML5_11q12.2 ### chr11 rmsk gene 60758287 60762429 . + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0079"; model_cov "1125"; model_pct "16.5"; chr11 rmsk exon 60758287 60758453 358 + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0079"; repClass "LTR"; repEnd "1234"; repFamily "ERVK"; repLeft "-5603"; repStart "1068"; chr11 rmsk exon 60758811 60758998 251 + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0079"; repClass "LTR"; repEnd "3875"; repFamily "ERVK"; repLeft "-2962"; repStart "3702"; chr11 rmsk exon 60760392 60760522 276 + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0079"; repClass "LTR"; repEnd "4097"; repFamily "ERVK"; repLeft "-2740"; repStart "3998"; chr11 rmsk exon 60760577 60760770 268 + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0079"; repClass "LTR"; repEnd "4507"; repFamily "ERVK"; repLeft "-2330"; repStart "4318"; chr11 rmsk exon 60761930 60762429 507 + . gene_id "HML5_11q12.2"; transcript_id "HML5_11q12.2"; locus "HML5_11q12.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0079"; repClass "LTR"; repEnd "6521"; repFamily "ERVK"; repLeft "-316"; repStart "6023"; ### ERVLE_11q12.2 ### chr11 rmsk gene 60964616 60965963 . + . gene_id "ERVLE_11q12.2"; transcript_id "ERVLE_11q12.2"; locus "ERVLE_11q12.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2530"; model_cov "1021"; model_pct "18.0"; chr11 rmsk exon 60964616 60965155 1298 + . gene_id "ERVLE_11q12.2"; transcript_id "ERVLE_11q12.2"; locus "ERVLE_11q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2530"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "-2374"; repStart "2734"; chr11 rmsk exon 60965238 60965305 1014 + . gene_id "ERVLE_11q12.2"; transcript_id "ERVLE_11q12.2"; locus "ERVLE_11q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2530"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "-2181"; repStart "3415"; chr11 rmsk exon 60965618 60965963 1014 + . gene_id "ERVLE_11q12.2"; transcript_id "ERVLE_11q12.2"; locus "ERVLE_11q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2530"; repClass "LTR"; repEnd "3878"; repFamily "ERVL"; repLeft "-1789"; repStart "3487"; ### HERVEA_11q12.2 ### chr11 rmsk gene 61093594 61098841 . + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0062"; model_cov "5658"; model_pct "72.1"; chr11 rmsk exon 61093594 61094050 3672 + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0062"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 61094051 61094441 2890 + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0062"; repClass "LTR"; repEnd "386"; repFamily "ERV1"; repLeft "-7461"; repStart "1"; chr11 rmsk exon 61094435 61097062 20948 + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0062"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-4794"; repStart "-868"; chr11 rmsk exon 61097037 61098391 11158 + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0062"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "6495"; chr11 rmsk exon 61098392 61098841 3416 + . gene_id "HERVEA_11q12.2"; transcript_id "HERVEA_11q12.2"; locus "HERVEA_11q12.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0062"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_11q12.2 ### chr11 rmsk gene 61372805 61377565 . + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0538"; model_cov "3380"; model_pct "51.2"; chr11 rmsk exon 61372805 61373825 10652 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0538"; repClass "LTR"; repEnd "4898"; repFamily "ERV1"; repLeft "-1700"; repStart "3212"; chr11 rmsk exon 61374451 61374667 10652 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0538"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "-1492"; repStart "4899"; chr11 rmsk exon 61374981 61375314 10652 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0538"; repClass "LTR"; repEnd "5467"; repFamily "ERV1"; repLeft "-1131"; repStart "5107"; chr11 rmsk exon 61375622 61376066 10652 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0538"; repClass "LTR"; repEnd "5906"; repFamily "ERV1"; repLeft "-692"; repStart "5468"; chr11 rmsk exon 61376385 61376933 10652 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0538"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5907"; chr11 rmsk exon 61376942 61377565 2311 + . gene_id "MER4_11q12.2"; transcript_id "MER4_11q12.2"; locus "MER4_11q12.2"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0538"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML6_11q12.3a ### chr11 rmsk gene 62049779 62056355 . - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0056"; model_cov "5612"; model_pct "77.9"; chr11 rmsk exon 62049779 62050221 2683 - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0056"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr11 rmsk exon 62050224 62052820 17840 - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0056"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "4595"; repStart "-2"; chr11 rmsk exon 62052893 62053032 1070 - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0056"; repClass "LTR"; repEnd "4217"; repFamily "ERVK"; repLeft "4078"; repStart "-2985"; chr11 rmsk exon 62053020 62055871 18890 - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0056"; repClass "LTR"; repEnd "2869"; repFamily "ERVK"; repLeft "1"; repStart "-4333"; chr11 rmsk exon 62055872 62056355 2859 - . gene_id "HML6_11q12.3a"; transcript_id "HML6_11q12.3a"; locus "HML6_11q12.3a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0056"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_11q12.3a ### chr11 rmsk gene 62087302 62091236 . + . gene_id "MER4_11q12.3a"; transcript_id "MER4_11q12.3a"; locus "MER4_11q12.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0540"; model_cov "4557"; model_pct "69.1"; chr11 rmsk exon 62087302 62087773 5560 + . gene_id "MER4_11q12.3a"; transcript_id "MER4_11q12.3a"; locus "MER4_11q12.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0540"; repClass "LTR"; repEnd "2042"; repFamily "ERV1"; repLeft "-4556"; repStart "1191"; chr11 rmsk exon 62088003 62088906 5560 + . gene_id "MER4_11q12.3a"; transcript_id "MER4_11q12.3a"; locus "MER4_11q12.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0540"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "-2919"; repStart "2043"; chr11 rmsk exon 62088905 62090494 12778 + . gene_id "MER4_11q12.3a"; transcript_id "MER4_11q12.3a"; locus "MER4_11q12.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0540"; repClass "LTR"; repEnd "5470"; repFamily "ERV1"; repLeft "-1128"; repStart "3836"; chr11 rmsk exon 62090795 62091236 12778 + . gene_id "MER4_11q12.3a"; transcript_id "MER4_11q12.3a"; locus "MER4_11q12.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0540"; repClass "LTR"; repEnd "5907"; repFamily "ERV1"; repLeft "-691"; repStart "5471"; ### HERVIP10F_11q12.3 ### chr11 rmsk gene 62215040 62223427 . + . gene_id "HERVIP10F_11q12.3"; transcript_id "HERVIP10F_11q12.3"; locus "HERVIP10F_11q12.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0072"; model_cov "6814"; model_pct "88.1"; chr11 rmsk exon 62215040 62215948 30335 + . gene_id "HERVIP10F_11q12.3"; transcript_id "HERVIP10F_11q12.3"; locus "HERVIP10F_11q12.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0072"; repClass "LTR"; repEnd "1526"; repFamily "ERV1"; repLeft "-6211"; repStart "635"; chr11 rmsk exon 62216940 62222806 30335 + . gene_id "HERVIP10F_11q12.3"; transcript_id "HERVIP10F_11q12.3"; locus "HERVIP10F_11q12.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0072"; repClass "LTR"; repEnd "7450"; repFamily "ERV1"; repLeft "-287"; repStart "1527"; chr11 rmsk exon 62222807 62223427 2858 + . gene_id "HERVIP10F_11q12.3"; transcript_id "HERVIP10F_11q12.3"; locus "HERVIP10F_11q12.3"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0072"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "25"; ### HML6_11q12.3b ### chr11 rmsk gene 62251757 62254111 . + . gene_id "HML6_11q12.3b"; transcript_id "HML6_11q12.3b"; locus "HML6_11q12.3b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0057"; model_cov "1969"; model_pct "27.3"; chr11 rmsk exon 62251757 62252189 3166 + . gene_id "HML6_11q12.3b"; transcript_id "HML6_11q12.3b"; locus "HML6_11q12.3b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0057"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr11 rmsk exon 62252197 62254111 13534 + . gene_id "HML6_11q12.3b"; transcript_id "HML6_11q12.3b"; locus "HML6_11q12.3b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0057"; repClass "LTR"; repEnd "1970"; repFamily "ERVK"; repLeft "-5232"; repStart "1"; ### HERVH48_11q12.3 ### chr11 rmsk gene 62273986 62275876 . - . gene_id "HERVH48_11q12.3"; transcript_id "HERVH48_11q12.3"; locus "HERVH48_11q12.3"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0038"; model_cov "1531"; model_pct "23.0"; chr11 rmsk exon 62273986 62274369 2662 - . gene_id "HERVH48_11q12.3"; transcript_id "HERVH48_11q12.3"; locus "HERVH48_11q12.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0038"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 62274370 62274543 1313 - . gene_id "HERVH48_11q12.3"; transcript_id "HERVH48_11q12.3"; locus "HERVH48_11q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0038"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6472"; repStart "0"; chr11 rmsk exon 62274532 62275876 9444 - . gene_id "HERVH48_11q12.3"; transcript_id "HERVH48_11q12.3"; locus "HERVH48_11q12.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0038"; repClass "LTR"; repEnd "5666"; repFamily "ERV1"; repLeft "4317"; repStart "-988"; ### MER61_11q12.3 ### chr11 rmsk gene 62276582 62277666 . - . gene_id "MER61_11q12.3"; transcript_id "MER61_11q12.3"; locus "MER61_11q12.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0265"; model_cov "763"; model_pct "14.6"; chr11 rmsk exon 62276582 62277039 4953 - . gene_id "MER61_11q12.3"; transcript_id "MER61_11q12.3"; locus "MER61_11q12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0265"; repClass "LTR"; repEnd "2454"; repFamily "ERV1"; repLeft "2010"; repStart "-2763"; chr11 rmsk exon 62277348 62277666 4953 - . gene_id "MER61_11q12.3"; transcript_id "MER61_11q12.3"; locus "MER61_11q12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0265"; repClass "LTR"; repEnd "2009"; repFamily "ERV1"; repLeft "1690"; repStart "-3208"; ### MER4_11q12.3b ### chr11 rmsk gene 62280344 62284051 . + . gene_id "MER4_11q12.3b"; transcript_id "MER4_11q12.3b"; locus "MER4_11q12.3b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0542"; model_cov "3531"; model_pct "53.5"; chr11 rmsk exon 62280344 62280494 701 + . gene_id "MER4_11q12.3b"; transcript_id "MER4_11q12.3b"; locus "MER4_11q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0542"; repClass "LTR"; repEnd "2278"; repFamily "ERV1"; repLeft "-4320"; repStart "2131"; chr11 rmsk exon 62280495 62281057 2085 + . gene_id "MER4_11q12.3b"; transcript_id "MER4_11q12.3b"; locus "MER4_11q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0542"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "3074"; chr11 rmsk exon 62281055 62281199 15124 + . gene_id "MER4_11q12.3b"; transcript_id "MER4_11q12.3b"; locus "MER4_11q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0542"; repClass "LTR"; repEnd "3961"; repFamily "ERV1"; repLeft "-2637"; repStart "3815"; chr11 rmsk exon 62281487 62284051 15124 + . gene_id "MER4_11q12.3b"; transcript_id "MER4_11q12.3b"; locus "MER4_11q12.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0542"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3962"; ### MER4_11q12.3c ### chr11 rmsk gene 62284134 62288946 . - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0543"; model_cov "3475"; model_pct "52.7"; chr11 rmsk exon 62284134 62284270 873 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0543"; repClass "LTR"; repEnd "4167"; repFamily "ERV1"; repLeft "4035"; repStart "-2431"; chr11 rmsk exon 62284261 62285677 8502 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0543"; repClass "LTR"; repEnd "2204"; repFamily "ERV1"; repLeft "810"; repStart "-4394"; chr11 rmsk exon 62286174 62286474 8502 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0543"; repClass "LTR"; repEnd "1547"; repFamily "ERV1"; repLeft "1247"; repStart "-5051"; chr11 rmsk exon 62286944 62288015 8502 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0543"; repClass "LTR"; repEnd "1246"; repFamily "ERV1"; repLeft "1"; repStart "-5352"; chr11 rmsk exon 62288020 62288524 2795 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0543"; repClass "LTR"; repEnd "662"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 62288533 62288946 923 - . gene_id "MER4_11q12.3c"; transcript_id "MER4_11q12.3c"; locus "MER4_11q12.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0543"; repClass "LTR"; repEnd "1002"; repFamily "ERV1"; repLeft "598"; repStart "-5596"; ### HUERSP3B_11q12.3 ### chr11 rmsk gene 62301271 62302558 . + . gene_id "HUERSP3B_11q12.3"; transcript_id "HUERSP3B_11q12.3"; locus "HUERSP3B_11q12.3"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0093"; model_cov "1848"; model_pct "24.9"; chr11 rmsk exon 62301271 62302517 7969 + . gene_id "HUERSP3B_11q12.3"; transcript_id "HUERSP3B_11q12.3"; locus "HUERSP3B_11q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0093"; repClass "LTR"; repEnd "4460"; repFamily "ERV1"; repLeft "-2958"; repStart "2661"; chr11 rmsk exon 62302509 62302558 380 + . gene_id "HUERSP3B_11q12.3"; transcript_id "HUERSP3B_11q12.3"; locus "HUERSP3B_11q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0093"; repClass "LTR"; repEnd "5379"; repFamily "ERV1"; repLeft "-2039"; repStart "5330"; ### HML2_11q12.3a ### chr11 rmsk gene 62368491 62370999 . - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0086"; model_cov "1457"; model_pct "19.3"; chr11 rmsk exon 62368491 62369451 5940 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 62369545 62370999 11630 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5984"; repStart "-95"; ### HML2_11q12.3b ### chr11 rmsk gene 62375545 62383091 . - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0087"; model_cov "6011"; model_pct "79.8"; chr11 rmsk exon 62375545 62375829 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5998"; repFamily "ERVK"; repLeft "5718"; repStart "-1538"; chr11 rmsk exon 62376126 62381099 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5717"; repFamily "ERVK"; repLeft "743"; repStart "-1819"; chr11 rmsk exon 62381171 62381929 5179 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr11 rmsk exon 62381930 62382006 5110 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "892"; repStart "0"; chr11 rmsk exon 62382200 62383091 5294 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "891"; repFamily "ERVK"; repLeft "-33"; repStart "-77"; ### ERV316A3_11q12.3 ### chr11 rmsk gene 62863562 62866118 . - . gene_id "ERV316A3_11q12.3"; transcript_id "ERV316A3_11q12.3"; locus "ERV316A3_11q12.3"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1961"; model_cov "1615"; model_pct "30.9"; chr11 rmsk exon 62863562 62864080 1412 - . gene_id "ERV316A3_11q12.3"; transcript_id "ERV316A3_11q12.3"; locus "ERV316A3_11q12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1961"; repClass "LTR"; repEnd "3359"; repFamily "ERVL"; repLeft "2829"; repStart "-1867"; chr11 rmsk exon 62864079 62864293 783 - . gene_id "ERV316A3_11q12.3"; transcript_id "ERV316A3_11q12.3"; locus "ERV316A3_11q12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1961"; repClass "LTR"; repEnd "2587"; repFamily "ERVL"; repLeft "2358"; repStart "-2639"; chr11 rmsk exon 62864904 62865271 2131 - . gene_id "ERV316A3_11q12.3"; transcript_id "ERV316A3_11q12.3"; locus "ERV316A3_11q12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1961"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "1648"; repStart "-3236"; chr11 rmsk exon 62865584 62866118 2131 - . gene_id "ERV316A3_11q12.3"; transcript_id "ERV316A3_11q12.3"; locus "ERV316A3_11q12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1961"; repClass "LTR"; repEnd "1647"; repFamily "ERVL"; repLeft "1133"; repStart "-3579"; ### HUERSP1_11q12.3 ### chr11 rmsk gene 63136567 63142914 . + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0135"; model_cov "5071"; model_pct "81.0"; chr11 rmsk exon 63136567 63136712 967 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "548"; chr11 rmsk exon 63136713 63138358 27678 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "1678"; repFamily "ERV1"; repLeft "-4585"; repStart "1"; chr11 rmsk exon 63138670 63140059 27678 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "-3175"; repStart "1679"; chr11 rmsk exon 63140378 63141424 27678 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "4134"; repFamily "ERV1"; repLeft "-2129"; repStart "3089"; chr11 rmsk exon 63141418 63142348 6759 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5323"; chr11 rmsk exon 63142349 63142914 4057 + . gene_id "HUERSP1_11q12.3"; transcript_id "HUERSP1_11q12.3"; locus "HUERSP1_11q12.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0135"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### HERVL74_11q12.3 ### chr11 rmsk gene 63248261 63251783 . + . gene_id "HERVL74_11q12.3"; transcript_id "HERVL74_11q12.3"; locus "HERVL74_11q12.3"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0074"; model_cov "1964"; model_pct "34.5"; chr11 rmsk exon 63248261 63248615 1425 + . gene_id "HERVL74_11q12.3"; transcript_id "HERVL74_11q12.3"; locus "HERVL74_11q12.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0074"; repClass "LTR"; repEnd "1379"; repFamily "ERVL"; repLeft "-4306"; repStart "1030"; chr11 rmsk exon 63249883 63251091 3516 + . gene_id "HERVL74_11q12.3"; transcript_id "HERVL74_11q12.3"; locus "HERVL74_11q12.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0074"; repClass "LTR"; repEnd "2682"; repFamily "ERVL"; repLeft "-3003"; repStart "1397"; chr11 rmsk exon 63251450 63251783 3103 + . gene_id "HERVL74_11q12.3"; transcript_id "HERVL74_11q12.3"; locus "HERVL74_11q12.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0074"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "-2672"; repStart "2683"; ### HERVH_11q12.3 ### chr11 rmsk gene 63452639 63459507 . + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; category "unknown"; intModel "HERVH-int"; locid "HERVH-int_0861"; model_cov "5783"; model_pct "75.0"; chr11 rmsk exon 63452639 63453089 3255 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 63453093 63453787 3042 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "917"; repFamily "ERV1"; repLeft "-6796"; repStart "1"; chr11 rmsk exon 63453788 63454201 2585 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 63454205 63456325 14611 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "913"; chr11 rmsk exon 63456305 63456452 999 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr11 rmsk exon 63456445 63456949 3481 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 63456952 63457141 1303 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr11 rmsk exon 63457128 63459056 14384 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5769"; chr11 rmsk exon 63459057 63459507 3429 + . gene_id "HERVH_11q12.3"; transcript_id "HERVH_11q12.3"; locus "HERVH_11q12.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0861"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_11q13.1a ### chr11 rmsk gene 64397783 64403305 . + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2533"; model_cov "3020"; model_pct "53.3"; chr11 rmsk exon 64397783 64398525 3207 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "2686"; repFamily "ERVL"; repLeft "-2981"; repStart "1930"; chr11 rmsk exon 64398895 64399098 3207 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "2886"; repFamily "ERVL"; repLeft "-2781"; repStart "2687"; chr11 rmsk exon 64399334 64399598 874 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "-2426"; repStart "2994"; chr11 rmsk exon 64399914 64399988 874 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "3324"; repFamily "ERVL"; repLeft "-2343"; repStart "3242"; chr11 rmsk exon 64400513 64400807 4906 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "-1867"; repStart "3431"; chr11 rmsk exon 64401022 64402091 4906 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-796"; repStart "3801"; chr11 rmsk exon 64402402 64402510 4906 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "4978"; repFamily "ERVL"; repLeft "-689"; repStart "4872"; chr11 rmsk exon 64402699 64402762 448 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "-137"; repStart "5475"; chr11 rmsk exon 64403166 64403305 448 + . gene_id "ERVLE_11q13.1a"; transcript_id "ERVLE_11q13.1a"; locus "ERVLE_11q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2533"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5531"; ### ERV316A3_11q13.1a ### chr11 rmsk gene 64449595 64450882 . + . gene_id "ERV316A3_11q13.1a"; transcript_id "ERV316A3_11q13.1a"; locus "ERV316A3_11q13.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1962"; model_cov "926"; model_pct "17.7"; chr11 rmsk exon 64449595 64449733 257 + . gene_id "ERV316A3_11q13.1a"; transcript_id "ERV316A3_11q13.1a"; locus "ERV316A3_11q13.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1962"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "-213"; repStart "89"; chr11 rmsk exon 64450007 64450882 2446 + . gene_id "ERV316A3_11q13.1a"; transcript_id "ERV316A3_11q13.1a"; locus "ERV316A3_11q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1962"; repClass "LTR"; repEnd "1277"; repFamily "ERVL"; repLeft "-3949"; repStart "351"; ### ERV316A3_11q13.1b ### chr11 rmsk gene 64451182 64458279 . + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1963"; model_cov "3647"; model_pct "69.8"; chr11 rmsk exon 64451182 64451323 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "-4051"; repStart "1048"; chr11 rmsk exon 64451743 64452297 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "1733"; repFamily "ERVL"; repLeft "-3493"; repStart "1176"; chr11 rmsk exon 64453340 64453388 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "1783"; repFamily "ERVL"; repLeft "-3443"; repStart "1734"; chr11 rmsk exon 64453819 64454249 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "2174"; repFamily "ERVL"; repLeft "-3052"; repStart "1784"; chr11 rmsk exon 64454543 64454674 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "2324"; repFamily "ERVL"; repLeft "-2902"; repStart "2175"; chr11 rmsk exon 64454962 64455487 2446 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "2892"; repFamily "ERVL"; repLeft "-2334"; repStart "2325"; chr11 rmsk exon 64455511 64455910 628 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "2994"; repFamily "ERVL"; repLeft "-2232"; repStart "2514"; chr11 rmsk exon 64456050 64456179 2135 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "3699"; repFamily "ERVL"; repLeft "-1527"; repStart "3574"; chr11 rmsk exon 64456477 64457540 2135 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "-440"; repStart "3700"; chr11 rmsk exon 64457567 64457683 422 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "-225"; repStart "4884"; chr11 rmsk exon 64457891 64458279 792 + . gene_id "ERV316A3_11q13.1b"; transcript_id "ERV316A3_11q13.1b"; locus "ERV316A3_11q13.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1963"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-65"; repStart "1"; ### ERVLE_11q13.1b ### chr11 rmsk gene 64518333 64522556 . - . gene_id "ERVLE_11q13.1b"; transcript_id "ERVLE_11q13.1b"; locus "ERVLE_11q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2535"; model_cov "4044"; model_pct "71.4"; chr11 rmsk exon 64518333 64520258 3001 - . gene_id "ERVLE_11q13.1b"; transcript_id "ERVLE_11q13.1b"; locus "ERVLE_11q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2535"; repClass "LTR"; repEnd "4857"; repFamily "ERVL"; repLeft "2652"; repStart "-810"; chr11 rmsk exon 64520551 64521685 3001 - . gene_id "ERVLE_11q13.1b"; transcript_id "ERVLE_11q13.1b"; locus "ERVLE_11q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2535"; repClass "LTR"; repEnd "2805"; repFamily "ERVL"; repLeft "1551"; repStart "-2862"; chr11 rmsk exon 64521988 64522556 1002 - . gene_id "ERVLE_11q13.1b"; transcript_id "ERVLE_11q13.1b"; locus "ERVLE_11q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2535"; repClass "LTR"; repEnd "1550"; repFamily "ERVL"; repLeft "965"; repStart "-4117"; ### HERVP71A_11q13.2 ### chr11 rmsk gene 66441882 66443982 . - . gene_id "HERVP71A_11q13.2"; transcript_id "HERVP71A_11q13.2"; locus "HERVP71A_11q13.2"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0055"; model_cov "1129"; model_pct "14.9"; chr11 rmsk exon 66441882 66441993 7626 - . gene_id "HERVP71A_11q13.2"; transcript_id "HERVP71A_11q13.2"; locus "HERVP71A_11q13.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0055"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "1025"; repStart "-6459"; chr11 rmsk exon 66442504 66443527 7626 - . gene_id "HERVP71A_11q13.2"; transcript_id "HERVP71A_11q13.2"; locus "HERVP71A_11q13.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0055"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "1"; repStart "-6566"; chr11 rmsk exon 66443528 66443982 3397 - . gene_id "HERVP71A_11q13.2"; transcript_id "HERVP71A_11q13.2"; locus "HERVP71A_11q13.2"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0055"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_11q13.2a ### chr11 rmsk gene 66573597 66576956 . + . gene_id "HERVH_11q13.2a"; transcript_id "HERVH_11q13.2a"; locus "HERVH_11q13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0862"; model_cov "2699"; model_pct "35.0"; chr11 rmsk exon 66573597 66574046 3575 + . gene_id "HERVH_11q13.2a"; transcript_id "HERVH_11q13.2a"; locus "HERVH_11q13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0862"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 66574049 66576727 18183 + . gene_id "HERVH_11q13.2a"; transcript_id "HERVH_11q13.2a"; locus "HERVH_11q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0862"; repClass "LTR"; repEnd "2700"; repFamily "ERV1"; repLeft "-5013"; repStart "1"; chr11 rmsk exon 66576729 66576956 1619 + . gene_id "HERVH_11q13.2a"; transcript_id "HERVH_11q13.2a"; locus "HERVH_11q13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0862"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "221"; ### MER101_11q13.2 ### chr11 rmsk gene 67654639 67661572 . + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0274"; model_cov "2740"; model_pct "41.3"; chr11 rmsk exon 67654639 67655012 2308 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "1598"; repFamily "ERV1"; repLeft "-5041"; repStart "1189"; chr11 rmsk exon 67655330 67655813 2308 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "2006"; repFamily "ERV1"; repLeft "-4633"; repStart "1599"; chr11 rmsk exon 67656135 67656610 2308 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "2503"; repFamily "ERV1"; repLeft "-4136"; repStart "2007"; chr11 rmsk exon 67656907 67657000 2308 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "2587"; repFamily "ERV1"; repLeft "-4052"; repStart "2504"; chr11 rmsk exon 67657303 67657600 2308 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "3034"; repFamily "ERV1"; repLeft "-3605"; repStart "2588"; chr11 rmsk exon 67657618 67658123 2849 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "3804"; repFamily "ERV1"; repLeft "-2835"; repStart "3302"; chr11 rmsk exon 67658431 67658508 2849 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "3879"; repFamily "ERV1"; repLeft "-2760"; repStart "3805"; chr11 rmsk exon 67658801 67658883 2849 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "3954"; repFamily "ERV1"; repLeft "-2685"; repStart "3880"; chr11 rmsk exon 67660202 67660335 950 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "4077"; repFamily "ERV1"; repLeft "-2562"; repStart "3941"; chr11 rmsk exon 67661409 67661572 950 + . gene_id "MER101_11q13.2"; transcript_id "MER101_11q13.2"; locus "MER101_11q13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0274"; repClass "LTR"; repEnd "4191"; repFamily "ERV1"; repLeft "-2448"; repStart "4078"; ### MER4B_11q13.2 ### chr11 rmsk gene 67679749 67683767 . + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0314"; model_cov "1238"; model_pct "18.3"; chr11 rmsk exon 67679749 67680033 5734 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "5745"; repFamily "ERV1"; repLeft "-1013"; repStart "5470"; chr11 rmsk exon 67680323 67680436 5734 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "-923"; repStart "5746"; chr11 rmsk exon 67680717 67681056 5734 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "6175"; repFamily "ERV1"; repLeft "-583"; repStart "5836"; chr11 rmsk exon 67681431 67681786 5734 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "6469"; repFamily "ERV1"; repLeft "-289"; repStart "6176"; chr11 rmsk exon 67682661 67682690 5734 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "6496"; repFamily "ERV1"; repLeft "-262"; repStart "6470"; chr11 rmsk exon 67683286 67683497 1305 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "6541"; chr11 rmsk exon 67683501 67683767 1602 + . gene_id "MER4B_11q13.2"; transcript_id "MER4B_11q13.2"; locus "MER4B_11q13.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0314"; repClass "LTR"; repEnd "289"; repFamily "ERV1"; repLeft "-321"; repStart "3"; ### HERVIP10F_11q13.2 ### chr11 rmsk gene 67689713 67696211 . - . gene_id "HERVIP10F_11q13.2"; transcript_id "HERVIP10F_11q13.2"; locus "HERVIP10F_11q13.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0074"; model_cov "5521"; model_pct "71.4"; chr11 rmsk exon 67689713 67693065 17228 - . gene_id "HERVIP10F_11q13.2"; transcript_id "HERVIP10F_11q13.2"; locus "HERVIP10F_11q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0074"; repClass "LTR"; repEnd "5381"; repFamily "ERV1"; repLeft "2020"; repStart "-2356"; chr11 rmsk exon 67693389 67695559 17228 - . gene_id "HERVIP10F_11q13.2"; transcript_id "HERVIP10F_11q13.2"; locus "HERVIP10F_11q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0074"; repClass "LTR"; repEnd "2143"; repFamily "ERV1"; repLeft "-17"; repStart "-5594"; chr11 rmsk exon 67695593 67696211 2080 - . gene_id "HERVIP10F_11q13.2"; transcript_id "HERVIP10F_11q13.2"; locus "HERVIP10F_11q13.2"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0074"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "-21"; ### HERVK11_11q13.2 ### chr11 rmsk gene 67698550 67705411 . + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0075"; model_cov "5410"; model_pct "68.0"; chr11 rmsk exon 67698550 67699573 4319 + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0075"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 67699574 67701236 11800 + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0075"; repClass "LTR"; repEnd "1642"; repFamily "ERVK"; repLeft "-6311"; repStart "1"; chr11 rmsk exon 67701231 67702169 28221 + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0075"; repClass "LTR"; repEnd "5124"; repFamily "ERVK"; repLeft "-2829"; repStart "4183"; chr11 rmsk exon 67702472 67705289 28221 + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0075"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5125"; chr11 rmsk exon 67705290 67705411 905 + . gene_id "HERVK11_11q13.2"; transcript_id "HERVK11_11q13.2"; locus "HERVK11_11q13.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0075"; repClass "LTR"; repEnd "122"; repFamily "ERVK"; repLeft "-1144"; repStart "1"; ### HERVE_11q13.2a ### chr11 rmsk gene 67726810 67730864 . - . gene_id "HERVE_11q13.2a"; transcript_id "HERVE_11q13.2a"; locus "HERVE_11q13.2a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0106"; model_cov "4057"; model_pct "51.9"; chr11 rmsk exon 67726810 67730864 29262 - . gene_id "HERVE_11q13.2a"; transcript_id "HERVE_11q13.2a"; locus "HERVE_11q13.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0106"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVH_11q13.2b ### chr11 rmsk gene 67759685 67765364 . + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0863"; model_cov "5059"; model_pct "65.6"; chr11 rmsk exon 67759685 67760095 2715 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 67760098 67763209 20210 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr11 rmsk exon 67763200 67763701 3421 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 67763704 67764360 4341 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 67764364 67764577 1348 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5602"; chr11 rmsk exon 67764576 67764954 2435 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 67764956 67765364 2623 + . gene_id "HERVH_11q13.2b"; transcript_id "HERVH_11q13.2b"; locus "HERVH_11q13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0863"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-4"; repStart "2"; ### HERVH_11q13.2c ### chr11 rmsk gene 67841906 67845157 . - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0864"; model_cov "1819"; model_pct "23.6"; chr11 rmsk exon 67841906 67842301 2580 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr11 rmsk exon 67842303 67842658 2043 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 67842659 67842869 1394 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 67842871 67842936 4359 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5090"; repStart "-2564"; chr11 rmsk exon 67844005 67844606 4359 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "4488"; repStart "-2624"; chr11 rmsk exon 67844609 67845157 4056 - . gene_id "HERVH_11q13.2c"; transcript_id "HERVH_11q13.2c"; locus "HERVH_11q13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0864"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3442"; repStart "-3720"; ### HERVE_11q13.2b ### chr11 rmsk gene 67845158 67853485 . - . gene_id "HERVE_11q13.2b"; transcript_id "HERVE_11q13.2b"; locus "HERVE_11q13.2b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0107"; model_cov "7809"; model_pct "99.9"; chr11 rmsk exon 67845158 67845654 3743 - . gene_id "HERVE_11q13.2b"; transcript_id "HERVE_11q13.2b"; locus "HERVE_11q13.2b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0107"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 67845655 67853485 63131 - . gene_id "HERVE_11q13.2b"; transcript_id "HERVE_11q13.2b"; locus "HERVE_11q13.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0107"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "3"; repStart "-1"; ### HERVH_11q13.2d ### chr11 rmsk gene 67853486 67856961 . - . gene_id "HERVH_11q13.2d"; transcript_id "HERVH_11q13.2d"; locus "HERVH_11q13.2d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0865"; model_cov "3292"; model_pct "42.7"; chr11 rmsk exon 67853486 67853790 2159 - . gene_id "HERVH_11q13.2d"; transcript_id "HERVH_11q13.2d"; locus "HERVH_11q13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0865"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "3140"; repStart "-4272"; chr11 rmsk exon 67853777 67856609 16172 - . gene_id "HERVH_11q13.2d"; transcript_id "HERVH_11q13.2d"; locus "HERVH_11q13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0865"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr11 rmsk exon 67856612 67856961 2060 - . gene_id "HERVH_11q13.2d"; transcript_id "HERVH_11q13.2d"; locus "HERVH_11q13.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0865"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_11q13.2 ### chr11 rmsk gene 67882066 67889515 . - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0035"; model_cov "6462"; model_pct "72.0"; chr11 rmsk exon 67882066 67882615 4528 - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0035"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 67882616 67882931 2222 - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0035"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr11 rmsk exon 67882929 67885775 14495 - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0035"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr11 rmsk exon 67885785 67888955 22615 - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0035"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "5"; repStart "-5742"; chr11 rmsk exon 67888959 67889515 4163 - . gene_id "HERVS71_11q13.2"; transcript_id "HERVS71_11q13.2"; locus "HERVS71_11q13.2"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0035"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_11q13.2 ### chr11 rmsk gene 67957462 67958064 . + . gene_id "ERVLB4_11q13.2"; transcript_id "ERVLB4_11q13.2"; locus "ERVLB4_11q13.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1196"; model_cov "631"; model_pct "11.0"; chr11 rmsk exon 67957462 67958064 3150 + . gene_id "ERVLB4_11q13.2"; transcript_id "ERVLB4_11q13.2"; locus "ERVLB4_11q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1196"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_11q13.2c ### chr11 rmsk gene 67978497 67982552 . - . gene_id "HERVE_11q13.2c"; transcript_id "HERVE_11q13.2c"; locus "HERVE_11q13.2c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0108"; model_cov "4063"; model_pct "52.0"; chr11 rmsk exon 67978497 67982552 28035 - . gene_id "HERVE_11q13.2c"; transcript_id "HERVE_11q13.2c"; locus "HERVE_11q13.2c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0108"; repClass "LTR"; repEnd "5171"; repFamily "ERV1"; repLeft "1108"; repStart "-2642"; ### HERVH_11q13.2e ### chr11 rmsk gene 68622705 68632796 . + . gene_id "HERVH_11q13.2e"; transcript_id "HERVH_11q13.2e"; locus "HERVH_11q13.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0866"; model_cov "7710"; model_pct "100.0"; chr11 rmsk exon 68622705 68623198 2927 + . gene_id "HERVH_11q13.2e"; transcript_id "HERVH_11q13.2e"; locus "HERVH_11q13.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0866"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr11 rmsk exon 68623202 68625053 9184 + . gene_id "HERVH_11q13.2e"; transcript_id "HERVH_11q13.2e"; locus "HERVH_11q13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0866"; repClass "LTR"; repEnd "1516"; repFamily "ERV1"; repLeft "-6197"; repStart "1"; chr11 rmsk exon 68626029 68632349 26901 + . gene_id "HERVH_11q13.2e"; transcript_id "HERVH_11q13.2e"; locus "HERVH_11q13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0866"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1518"; chr11 rmsk exon 68632350 68632796 3392 + . gene_id "HERVH_11q13.2e"; transcript_id "HERVH_11q13.2e"; locus "HERVH_11q13.2e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0866"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_11q13.2f ### chr11 rmsk gene 68633778 68639439 . + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0867"; model_cov "4916"; model_pct "63.7"; chr11 rmsk exon 68633778 68634170 2702 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 68634173 68637122 19387 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 68637102 68637246 806 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 68637237 68637739 3320 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 68637742 68638398 4282 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 68638400 68638616 1362 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 68638615 68638994 2425 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 68638995 68639439 3273 + . gene_id "HERVH_11q13.2f"; transcript_id "HERVH_11q13.2f"; locus "HERVH_11q13.2f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0867"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_11q13.2 ### chr11 rmsk gene 68640425 68641821 . + . gene_id "ERV316A3_11q13.2"; transcript_id "ERV316A3_11q13.2"; locus "ERV316A3_11q13.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1966"; model_cov "1417"; model_pct "27.1"; chr11 rmsk exon 68640425 68641821 3500 + . gene_id "ERV316A3_11q13.2"; transcript_id "ERV316A3_11q13.2"; locus "ERV316A3_11q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1966"; repClass "LTR"; repEnd "5220"; repFamily "ERVL"; repLeft "-6"; repStart "3803"; ### HERV3_11q13.3 ### chr11 rmsk gene 68867426 68874582 . + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0047"; model_cov "5443"; model_pct "64.6"; chr11 rmsk exon 68867426 68868032 3389 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 68868033 68869514 4156 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "-7017"; repStart "1"; chr11 rmsk exon 68869511 68869868 1860 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "2085"; repFamily "ERV1"; repLeft "-6341"; repStart "1709"; chr11 rmsk exon 68870461 68870706 1355 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "-5950"; repStart "2230"; chr11 rmsk exon 68870699 68870819 651 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-4602"; repStart "3701"; chr11 rmsk exon 68870796 68873979 10457 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "5136"; chr11 rmsk exon 68873982 68874582 3443 + . gene_id "HERV3_11q13.3"; transcript_id "HERV3_11q13.3"; locus "HERV3_11q13.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0047"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_11q13.3a ### chr11 rmsk gene 69021006 69028229 . - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2541"; model_cov "4384"; model_pct "77.4"; chr11 rmsk exon 69021006 69021170 549 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "5137"; repFamily "ERVL"; repLeft "4967"; repStart "-530"; chr11 rmsk exon 69021289 69021532 1253 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "4543"; repFamily "ERVL"; repLeft "4303"; repStart "-1124"; chr11 rmsk exon 69021758 69022685 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "4302"; repFamily "ERVL"; repLeft "3243"; repStart "-1365"; chr11 rmsk exon 69023313 69024021 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "2506"; repStart "-2425"; chr11 rmsk exon 69024333 69025126 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "2505"; repFamily "ERVL"; repLeft "1638"; repStart "-3162"; chr11 rmsk exon 69025439 69025862 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "1215"; repStart "-4030"; chr11 rmsk exon 69026170 69026238 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "1168"; repStart "-4453"; chr11 rmsk exon 69026534 69026560 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "1167"; repFamily "ERVL"; repLeft "1147"; repStart "-4500"; chr11 rmsk exon 69026764 69026823 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "1146"; repFamily "ERVL"; repLeft "1091"; repStart "-4521"; chr11 rmsk exon 69027434 69027782 5094 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "1090"; repFamily "ERVL"; repLeft "743"; repStart "-4577"; chr11 rmsk exon 69027795 69028229 1004 - . gene_id "ERVLE_11q13.3a"; transcript_id "ERVLE_11q13.3a"; locus "ERVLE_11q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2541"; repClass "LTR"; repEnd "589"; repFamily "ERVL"; repLeft "167"; repStart "-5078"; ### ERVLE_11q13.3b ### chr11 rmsk gene 69059046 69060177 . - . gene_id "ERVLE_11q13.3b"; transcript_id "ERVLE_11q13.3b"; locus "ERVLE_11q13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2542"; model_cov "720"; model_pct "12.7"; chr11 rmsk exon 69059046 69059240 518 - . gene_id "ERVLE_11q13.3b"; transcript_id "ERVLE_11q13.3b"; locus "ERVLE_11q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2542"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "5016"; repStart "-449"; chr11 rmsk exon 69059340 69059552 273 - . gene_id "ERVLE_11q13.3b"; transcript_id "ERVLE_11q13.3b"; locus "ERVLE_11q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2542"; repClass "LTR"; repEnd "4832"; repFamily "ERVL"; repLeft "4605"; repStart "-835"; chr11 rmsk exon 69059894 69060177 428 - . gene_id "ERVLE_11q13.3b"; transcript_id "ERVLE_11q13.3b"; locus "ERVLE_11q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2542"; repClass "LTR"; repEnd "4091"; repFamily "ERVL"; repLeft "3800"; repStart "-1576"; ### ERV316A3_11q13.3 ### chr11 rmsk gene 69383332 69384472 . + . gene_id "ERV316A3_11q13.3"; transcript_id "ERV316A3_11q13.3"; locus "ERV316A3_11q13.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1967"; model_cov "1185"; model_pct "22.7"; chr11 rmsk exon 69383332 69384066 1238 + . gene_id "ERV316A3_11q13.3"; transcript_id "ERV316A3_11q13.3"; locus "ERV316A3_11q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1967"; repClass "LTR"; repEnd "4030"; repFamily "ERVL"; repLeft "-1196"; repStart "3186"; chr11 rmsk exon 69384081 69384408 632 + . gene_id "ERV316A3_11q13.3"; transcript_id "ERV316A3_11q13.3"; locus "ERV316A3_11q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1967"; repClass "LTR"; repEnd "4414"; repFamily "ERVL"; repLeft "-812"; repStart "4073"; chr11 rmsk exon 69384409 69384472 234 + . gene_id "ERV316A3_11q13.3"; transcript_id "ERV316A3_11q13.3"; locus "ERV316A3_11q13.3"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1967"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-263"; repStart "123"; ### ERVLE_11q13.3c ### chr11 rmsk gene 69606279 69610466 . - . gene_id "ERVLE_11q13.3c"; transcript_id "ERVLE_11q13.3c"; locus "ERVLE_11q13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2543"; model_cov "1732"; model_pct "30.6"; chr11 rmsk exon 69606279 69606769 727 - . gene_id "ERVLE_11q13.3c"; transcript_id "ERVLE_11q13.3c"; locus "ERVLE_11q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2543"; repClass "LTR"; repEnd "4676"; repFamily "ERVL"; repLeft "4165"; repStart "-991"; chr11 rmsk exon 69607133 69607324 274 - . gene_id "ERVLE_11q13.3c"; transcript_id "ERVLE_11q13.3c"; locus "ERVLE_11q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2543"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "2462"; repStart "-3000"; chr11 rmsk exon 69609135 69609874 1630 - . gene_id "ERVLE_11q13.3c"; transcript_id "ERVLE_11q13.3c"; locus "ERVLE_11q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2543"; repClass "LTR"; repEnd "2454"; repFamily "ERVL"; repLeft "1717"; repStart "-3213"; chr11 rmsk exon 69610208 69610466 463 - . gene_id "ERVLE_11q13.3c"; transcript_id "ERVLE_11q13.3c"; locus "ERVLE_11q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2543"; repClass "LTR"; repEnd "1054"; repFamily "ERVL"; repLeft "775"; repStart "-4613"; ### HERVIP10F_11q13.3 ### chr11 rmsk gene 70038173 70040465 . + . gene_id "HERVIP10F_11q13.3"; transcript_id "HERVIP10F_11q13.3"; locus "HERVIP10F_11q13.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0075"; model_cov "1593"; model_pct "20.6"; chr11 rmsk exon 70038173 70038567 1344 + . gene_id "HERVIP10F_11q13.3"; transcript_id "HERVIP10F_11q13.3"; locus "HERVIP10F_11q13.3"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10F-int_0075"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "186"; chr11 rmsk exon 70038568 70038847 568 + . gene_id "HERVIP10F_11q13.3"; transcript_id "HERVIP10F_11q13.3"; locus "HERVIP10F_11q13.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0075"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "-7303"; repStart "149"; chr11 rmsk exon 70039127 70040465 3109 + . gene_id "HERVIP10F_11q13.3"; transcript_id "HERVIP10F_11q13.3"; locus "HERVIP10F_11q13.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0075"; repClass "LTR"; repEnd "1808"; repFamily "ERV1"; repLeft "-5929"; repStart "500"; ### HERVH_11q13.3a ### chr11 rmsk gene 70057466 70059950 . - . gene_id "HERVH_11q13.3a"; transcript_id "HERVH_11q13.3a"; locus "HERVH_11q13.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0868"; model_cov "1591"; model_pct "20.6"; chr11 rmsk exon 70057466 70057860 2002 - . gene_id "HERVH_11q13.3a"; transcript_id "HERVH_11q13.3a"; locus "HERVH_11q13.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0868"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "4"; repStart "-47"; chr11 rmsk exon 70057895 70058531 3858 - . gene_id "HERVH_11q13.3a"; transcript_id "HERVH_11q13.3a"; locus "HERVH_11q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0868"; repClass "LTR"; repEnd "7692"; repFamily "ERV1"; repLeft "7052"; repStart "-21"; chr11 rmsk exon 70058530 70058901 2535 - . gene_id "HERVH_11q13.3a"; transcript_id "HERVH_11q13.3a"; locus "HERVH_11q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0868"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "4845"; repStart "-2497"; chr11 rmsk exon 70059370 70059950 2584 - . gene_id "HERVH_11q13.3a"; transcript_id "HERVH_11q13.3a"; locus "HERVH_11q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0868"; repClass "LTR"; repEnd "4858"; repFamily "ERV1"; repLeft "4278"; repStart "-2855"; ### HERVH_11q13.3b ### chr11 rmsk gene 70059976 70061420 . - . gene_id "HERVH_11q13.3b"; transcript_id "HERVH_11q13.3b"; locus "HERVH_11q13.3b"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_0869"; model_cov "1823"; model_pct "23.6"; chr11 rmsk exon 70059976 70061420 3548 - . gene_id "HERVH_11q13.3b"; transcript_id "HERVH_11q13.3b"; locus "HERVH_11q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0869"; repClass "LTR"; repEnd "5706"; repFamily "ERV1"; repLeft "3883"; repStart "-2007"; ### HERVH_11q13.3c ### chr11 rmsk gene 70213950 70220156 . - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0870"; model_cov "5011"; model_pct "65.0"; chr11 rmsk exon 70213950 70214361 2875 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 70214672 70215048 2237 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "7710"; repFamily "ERV1"; repLeft "7322"; repStart "-3"; chr11 rmsk exon 70215047 70215263 1321 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 70215265 70215925 4078 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 70215928 70216071 1040 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3850"; repStart "-3720"; chr11 rmsk exon 70216067 70216651 4080 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "3746"; repFamily "ERV1"; repLeft "3140"; repStart "-3967"; chr11 rmsk exon 70216631 70219753 19252 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 70219756 70220156 2608 - . gene_id "HERVH_11q13.3c"; transcript_id "HERVH_11q13.3c"; locus "HERVH_11q13.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0870"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_11q13.4a ### chr11 rmsk gene 70524189 70525264 . + . gene_id "ERVLE_11q13.4a"; transcript_id "ERVLE_11q13.4a"; locus "ERVLE_11q13.4a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2544"; model_cov "1082"; model_pct "19.1"; chr11 rmsk exon 70524189 70525264 2312 + . gene_id "ERVLE_11q13.4a"; transcript_id "ERVLE_11q13.4a"; locus "ERVLE_11q13.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2544"; repClass "LTR"; repEnd "3257"; repFamily "ERVL"; repLeft "-2410"; repStart "2175"; ### HERVL40_11q13.4a ### chr11 rmsk gene 71182774 71188088 . + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0295"; model_cov "3199"; model_pct "57.8"; chr11 rmsk exon 71182774 71183102 1373 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "122"; chr11 rmsk exon 71183107 71183223 303 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "-5404"; repStart "7"; chr11 rmsk exon 71183413 71184024 1355 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "-3944"; repStart "959"; chr11 rmsk exon 71184163 71185910 3735 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "4597"; repFamily "ERVL"; repLeft "-933"; repStart "2708"; chr11 rmsk exon 71186687 71187011 403 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-263"; repStart "4924"; chr11 rmsk exon 71187005 71187247 743 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "5498"; repFamily "ERVL"; repLeft "-32"; repStart "5277"; chr11 rmsk exon 71187677 71188088 1190 + . gene_id "HERVL40_11q13.4a"; transcript_id "HERVL40_11q13.4a"; locus "HERVL40_11q13.4a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0295"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### ERVLE_11q13.4b ### chr11 rmsk gene 71573304 71575481 . + . gene_id "ERVLE_11q13.4b"; transcript_id "ERVLE_11q13.4b"; locus "ERVLE_11q13.4b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2546"; model_cov "2263"; model_pct "39.9"; chr11 rmsk exon 71573304 71574246 691 + . gene_id "ERVLE_11q13.4b"; transcript_id "ERVLE_11q13.4b"; locus "ERVLE_11q13.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2546"; repClass "LTR"; repEnd "2877"; repFamily "ERVL"; repLeft "-2790"; repStart "1812"; chr11 rmsk exon 71574368 71574933 1243 + . gene_id "ERVLE_11q13.4b"; transcript_id "ERVLE_11q13.4b"; locus "ERVLE_11q13.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2546"; repClass "LTR"; repEnd "2942"; repFamily "ERVL"; repLeft "-2725"; repStart "2288"; chr11 rmsk exon 71574975 71575481 1140 + . gene_id "ERVLE_11q13.4b"; transcript_id "ERVLE_11q13.4b"; locus "ERVLE_11q13.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2546"; repClass "LTR"; repEnd "3474"; repFamily "ERVL"; repLeft "-2193"; repStart "2930"; ### HERVE_11q13.4a ### chr11 rmsk gene 71586020 71590077 . + . gene_id "HERVE_11q13.4a"; transcript_id "HERVE_11q13.4a"; locus "HERVE_11q13.4a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0109"; model_cov "4057"; model_pct "51.9"; chr11 rmsk exon 71586020 71590077 27900 + . gene_id "HERVE_11q13.4a"; transcript_id "HERVE_11q13.4a"; locus "HERVE_11q13.4a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0109"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_11q13.4b ### chr11 rmsk gene 71611583 71615633 . + . gene_id "HERVE_11q13.4b"; transcript_id "HERVE_11q13.4b"; locus "HERVE_11q13.4b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0110"; model_cov "4057"; model_pct "51.9"; chr11 rmsk exon 71611583 71615633 27320 + . gene_id "HERVE_11q13.4b"; transcript_id "HERVE_11q13.4b"; locus "HERVE_11q13.4b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0110"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### ERVLB4_11q13.4a ### chr11 rmsk gene 71637166 71637769 . - . gene_id "ERVLB4_11q13.4a"; transcript_id "ERVLB4_11q13.4a"; locus "ERVLB4_11q13.4a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1197"; model_cov "631"; model_pct "11.0"; chr11 rmsk exon 71637166 71637769 2925 - . gene_id "ERVLB4_11q13.4a"; transcript_id "ERVLB4_11q13.4a"; locus "ERVLB4_11q13.4a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1197"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1473"; repStart "-3610"; ### HERVS71_11q13.4 ### chr11 rmsk gene 71705986 71713426 . + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0036"; model_cov "6463"; model_pct "72.0"; chr11 rmsk exon 71705986 71706539 4056 + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0036"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 71706542 71709730 22582 + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0036"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-5742"; repStart "4"; chr11 rmsk exon 71709740 71712562 14335 + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0036"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "4870"; chr11 rmsk exon 71712560 71712876 2242 + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0036"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr11 rmsk exon 71712877 71713426 4505 + . gene_id "HERVS71_11q13.4"; transcript_id "HERVS71_11q13.4"; locus "HERVS71_11q13.4"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0036"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q13.4a ### chr11 rmsk gene 71737575 71741114 . + . gene_id "HERVH_11q13.4a"; transcript_id "HERVH_11q13.4a"; locus "HERVH_11q13.4a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0871"; model_cov "3292"; model_pct "42.7"; chr11 rmsk exon 71737575 71737924 2025 + . gene_id "HERVH_11q13.4a"; transcript_id "HERVH_11q13.4a"; locus "HERVH_11q13.4a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0871"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 71737927 71740823 16404 + . gene_id "HERVH_11q13.4a"; transcript_id "HERVH_11q13.4a"; locus "HERVH_11q13.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0871"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr11 rmsk exon 71740810 71741114 2132 + . gene_id "HERVH_11q13.4a"; transcript_id "HERVH_11q13.4a"; locus "HERVH_11q13.4a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0871"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-4272"; repStart "3140"; ### HERVE_11q13.4c ### chr11 rmsk gene 71741115 71749426 . + . gene_id "HERVE_11q13.4c"; transcript_id "HERVE_11q13.4c"; locus "HERVE_11q13.4c"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0111"; model_cov "7809"; model_pct "99.9"; chr11 rmsk exon 71741115 71748930 63404 + . gene_id "HERVE_11q13.4c"; transcript_id "HERVE_11q13.4c"; locus "HERVE_11q13.4c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0111"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "3"; chr11 rmsk exon 71748931 71749426 3799 + . gene_id "HERVE_11q13.4c"; transcript_id "HERVE_11q13.4c"; locus "HERVE_11q13.4c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0111"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q13.4b ### chr11 rmsk gene 71749427 71752695 . + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0872"; model_cov "1817"; model_pct "23.6"; chr11 rmsk exon 71749427 71749976 4024 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3442"; chr11 rmsk exon 71749979 71750581 4271 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "-2624"; repStart "4488"; chr11 rmsk exon 71751650 71751715 4271 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "5090"; chr11 rmsk exon 71751717 71751921 1314 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "-1896"; repStart "5600"; chr11 rmsk exon 71751924 71752300 2493 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr11 rmsk exon 71752302 71752695 2427 + . gene_id "HERVH_11q13.4b"; transcript_id "HERVH_11q13.4b"; locus "HERVH_11q13.4b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0872"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HERVE_11q13.4d ### chr11 rmsk gene 71886034 71890084 . + . gene_id "HERVE_11q13.4d"; transcript_id "HERVE_11q13.4d"; locus "HERVE_11q13.4d"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0112"; model_cov "4057"; model_pct "51.9"; chr11 rmsk exon 71886034 71890084 22053 + . gene_id "HERVE_11q13.4d"; transcript_id "HERVE_11q13.4d"; locus "HERVE_11q13.4d"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0112"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_11q13.4e ### chr11 rmsk gene 71908491 71912322 . + . gene_id "HERVE_11q13.4e"; transcript_id "HERVE_11q13.4e"; locus "HERVE_11q13.4e"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0113"; model_cov "3836"; model_pct "49.1"; chr11 rmsk exon 71908491 71912322 27008 + . gene_id "HERVE_11q13.4e"; transcript_id "HERVE_11q13.4e"; locus "HERVE_11q13.4e"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0113"; repClass "LTR"; repEnd "4944"; repFamily "ERV1"; repLeft "-2869"; repStart "1108"; ### LTR25_11q13.4 ### chr11 rmsk gene 72125101 72128542 . - . gene_id "LTR25_11q13.4"; transcript_id "LTR25_11q13.4"; locus "LTR25_11q13.4"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0091"; model_cov "4016"; model_pct "55.9"; chr11 rmsk exon 72125101 72126828 11623 - . gene_id "LTR25_11q13.4"; transcript_id "LTR25_11q13.4"; locus "LTR25_11q13.4"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0091"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5487"; repStart "-1"; chr11 rmsk exon 72127114 72128542 11623 - . gene_id "LTR25_11q13.4"; transcript_id "LTR25_11q13.4"; locus "LTR25_11q13.4"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0091"; repClass "LTR"; repEnd "5486"; repFamily "ERV1"; repLeft "3170"; repStart "-1702"; ### PABLA_11q13.4 ### chr11 rmsk gene 72148055 72155376 . - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0106"; model_cov "3874"; model_pct "77.2"; chr11 rmsk exon 72148055 72148253 3452 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "4411"; repFamily "ERV1"; repLeft "4207"; repStart "-604"; chr11 rmsk exon 72148561 72148875 3452 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "4206"; repFamily "ERV1"; repLeft "3891"; repStart "-809"; chr11 rmsk exon 72150418 72150560 6158 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "4017"; repFamily "ERV1"; repLeft "3880"; repStart "-998"; chr11 rmsk exon 72150869 72151248 6158 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "3879"; repFamily "ERV1"; repLeft "3496"; repStart "-1136"; chr11 rmsk exon 72151554 72152227 6158 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "3495"; repFamily "ERV1"; repLeft "2864"; repStart "-1520"; chr11 rmsk exon 72152224 72152427 4752 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "2015"; repFamily "ERV1"; repLeft "1804"; repStart "-3000"; chr11 rmsk exon 72152732 72153466 4752 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "1803"; repFamily "ERV1"; repLeft "1020"; repStart "-3212"; chr11 rmsk exon 72153452 72153926 3743 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "351"; repStart "-4171"; chr11 rmsk exon 72154686 72154811 3743 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "350"; repFamily "ERV1"; repLeft "212"; repStart "-4665"; chr11 rmsk exon 72154805 72155376 3957 - . gene_id "PABLA_11q13.4"; transcript_id "PABLA_11q13.4"; locus "PABLA_11q13.4"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0106"; repClass "LTR"; repEnd "-322"; repFamily "ERV1"; repLeft "-901"; repStart "-5337"; ### MER41_11q13.4 ### chr11 rmsk gene 72149027 72149910 . + . gene_id "MER41_11q13.4"; transcript_id "MER41_11q13.4"; locus "MER41_11q13.4"; category "internal"; intModel "MER41-int"; locid "MER41-int_0372"; model_cov "635"; model_pct "10.7"; chr11 rmsk exon 72149027 72149448 2992 + . gene_id "MER41_11q13.4"; transcript_id "MER41_11q13.4"; locus "MER41_11q13.4"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0372"; repClass "LTR"; repEnd "2510"; repFamily "ERV1"; repLeft "-3436"; repStart "2017"; chr11 rmsk exon 72149754 72149910 2992 + . gene_id "MER41_11q13.4"; transcript_id "MER41_11q13.4"; locus "MER41_11q13.4"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0372"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "-3293"; repStart "2511"; ### MER61_11q13.4 ### chr11 rmsk gene 72162843 72167448 . - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0266"; model_cov "2496"; model_pct "47.8"; chr11 rmsk exon 72162843 72163172 1841 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0266"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 72163173 72163994 6632 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0266"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4360"; repStart "0"; chr11 rmsk exon 72164295 72164373 6632 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0266"; repClass "LTR"; repEnd "4359"; repFamily "ERV1"; repLeft "4285"; repStart "-858"; chr11 rmsk exon 72165342 72165435 6632 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0266"; repClass "LTR"; repEnd "4284"; repFamily "ERV1"; repLeft "4195"; repStart "-933"; chr11 rmsk exon 72165913 72166785 6532 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0266"; repClass "LTR"; repEnd "4205"; repFamily "ERV1"; repLeft "3329"; repStart "-1012"; chr11 rmsk exon 72167087 72167448 5817 - . gene_id "MER61_11q13.4"; transcript_id "MER61_11q13.4"; locus "MER61_11q13.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0266"; repClass "LTR"; repEnd "3328"; repFamily "ERV1"; repLeft "2728"; repStart "-1889"; ### ERVLE_11q13.4c ### chr11 rmsk gene 72257612 72260778 . + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2548"; model_cov "1564"; model_pct "27.6"; chr11 rmsk exon 72257612 72257914 1597 + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2548"; repClass "LTR"; repEnd "1388"; repFamily "ERVL"; repLeft "-4279"; repStart "1071"; chr11 rmsk exon 72258524 72258931 1597 + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2548"; repClass "LTR"; repEnd "1774"; repFamily "ERVL"; repLeft "-3893"; repStart "1389"; chr11 rmsk exon 72259284 72259339 1597 + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2548"; repClass "LTR"; repEnd "1832"; repFamily "ERVL"; repLeft "-3835"; repStart "1775"; chr11 rmsk exon 72259678 72259788 2231 + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2548"; repClass "LTR"; repEnd "1983"; repFamily "ERVL"; repLeft "-3684"; repStart "1874"; chr11 rmsk exon 72260097 72260778 2231 + . gene_id "ERVLE_11q13.4c"; transcript_id "ERVLE_11q13.4c"; locus "ERVLE_11q13.4c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2548"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "-2987"; repStart "1984"; ### ERVLE_11q13.4d ### chr11 rmsk gene 72453003 72455444 . + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2550"; model_cov "1939"; model_pct "34.2"; chr11 rmsk exon 72453003 72453428 2249 + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2550"; repClass "LTR"; repEnd "2826"; repFamily "ERVL"; repLeft "-2841"; repStart "2382"; chr11 rmsk exon 72453760 72454006 2249 + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2550"; repClass "LTR"; repEnd "3066"; repFamily "ERVL"; repLeft "-2601"; repStart "2827"; chr11 rmsk exon 72454012 72454296 635 + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2550"; repClass "LTR"; repEnd "3677"; repFamily "ERVL"; repLeft "-1990"; repStart "3393"; chr11 rmsk exon 72454496 72454850 853 + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2550"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "-1058"; repStart "4248"; chr11 rmsk exon 72454869 72455444 1136 + . gene_id "ERVLE_11q13.4d"; transcript_id "ERVLE_11q13.4d"; locus "ERVLE_11q13.4d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2550"; repClass "LTR"; repEnd "5562"; repFamily "ERVL"; repLeft "-105"; repStart "4951"; ### ERVLE_11q13.4e ### chr11 rmsk gene 72455767 72457076 . - . gene_id "ERVLE_11q13.4e"; transcript_id "ERVLE_11q13.4e"; locus "ERVLE_11q13.4e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2551"; model_cov "1124"; model_pct "19.8"; chr11 rmsk exon 72455767 72456047 2634 - . gene_id "ERVLE_11q13.4e"; transcript_id "ERVLE_11q13.4e"; locus "ERVLE_11q13.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2551"; repClass "LTR"; repEnd "3264"; repFamily "ERVL"; repLeft "2988"; repStart "-2403"; chr11 rmsk exon 72456361 72457076 2634 - . gene_id "ERVLE_11q13.4e"; transcript_id "ERVLE_11q13.4e"; locus "ERVLE_11q13.4e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2551"; repClass "LTR"; repEnd "2987"; repFamily "ERVL"; repLeft "2139"; repStart "-2680"; ### ERV316A3_11q13.4a ### chr11 rmsk gene 72458383 72458774 . + . gene_id "ERV316A3_11q13.4a"; transcript_id "ERV316A3_11q13.4a"; locus "ERV316A3_11q13.4a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1968"; model_cov "563"; model_pct "10.8"; chr11 rmsk exon 72458383 72458400 392 + . gene_id "ERV316A3_11q13.4a"; transcript_id "ERV316A3_11q13.4a"; locus "ERV316A3_11q13.4a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1968"; repClass "LTR"; repEnd "4821"; repFamily "ERVL"; repLeft "-405"; repStart "4804"; chr11 rmsk exon 72458480 72458774 392 + . gene_id "ERV316A3_11q13.4a"; transcript_id "ERV316A3_11q13.4a"; locus "ERV316A3_11q13.4a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1968"; repClass "LTR"; repEnd "4940"; repFamily "ERVL"; repLeft "-286"; repStart "4394"; ### ERVLE_11q13.4f ### chr11 rmsk gene 72474767 72476942 . + . gene_id "ERVLE_11q13.4f"; transcript_id "ERVLE_11q13.4f"; locus "ERVLE_11q13.4f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2554"; model_cov "1765"; model_pct "31.1"; chr11 rmsk exon 72474767 72475394 1571 + . gene_id "ERVLE_11q13.4f"; transcript_id "ERVLE_11q13.4f"; locus "ERVLE_11q13.4f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2554"; repClass "LTR"; repEnd "2122"; repFamily "ERVL"; repLeft "-3545"; repStart "1473"; chr11 rmsk exon 72475446 72475946 1819 + . gene_id "ERVLE_11q13.4f"; transcript_id "ERVLE_11q13.4f"; locus "ERVLE_11q13.4f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2554"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "-1314"; repStart "3842"; chr11 rmsk exon 72476336 72476942 1713 + . gene_id "ERVLE_11q13.4f"; transcript_id "ERVLE_11q13.4f"; locus "ERVLE_11q13.4f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2554"; repClass "LTR"; repEnd "4975"; repFamily "ERVL"; repLeft "-692"; repStart "4370"; ### ERV316A3_11q13.4b ### chr11 rmsk gene 72541686 72545232 . - . gene_id "ERV316A3_11q13.4b"; transcript_id "ERV316A3_11q13.4b"; locus "ERV316A3_11q13.4b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1969"; model_cov "3125"; model_pct "59.8"; chr11 rmsk exon 72541686 72542561 1629 - . gene_id "ERV316A3_11q13.4b"; transcript_id "ERV316A3_11q13.4b"; locus "ERV316A3_11q13.4b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1969"; repClass "LTR"; repEnd "4776"; repFamily "ERVL"; repLeft "3723"; repStart "-450"; chr11 rmsk exon 72543284 72545232 2890 - . gene_id "ERV316A3_11q13.4b"; transcript_id "ERV316A3_11q13.4b"; locus "ERV316A3_11q13.4b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1969"; repClass "LTR"; repEnd "3775"; repFamily "ERVL"; repLeft "1703"; repStart "-1451"; ### ERVLB4_11q13.4b ### chr11 rmsk gene 73618480 73620962 . + . gene_id "ERVLB4_11q13.4b"; transcript_id "ERVLB4_11q13.4b"; locus "ERVLB4_11q13.4b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1198"; model_cov "2010"; model_pct "35.2"; chr11 rmsk exon 73618480 73618881 1512 + . gene_id "ERVLB4_11q13.4b"; transcript_id "ERVLB4_11q13.4b"; locus "ERVLB4_11q13.4b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1198"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-75"; repStart "37"; chr11 rmsk exon 73618930 73620962 12083 + . gene_id "ERVLB4_11q13.4b"; transcript_id "ERVLB4_11q13.4b"; locus "ERVLB4_11q13.4b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1198"; repClass "LTR"; repEnd "3523"; repFamily "ERVL"; repLeft "-2191"; repStart "1513"; ### HML1_11q13.4 ### chr11 rmsk gene 73938890 73947474 . - . gene_id "HML1_11q13.4"; transcript_id "HML1_11q13.4"; locus "HML1_11q13.4"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0081"; model_cov "7392"; model_pct "100.0"; chr11 rmsk exon 73938890 73939521 3859 - . gene_id "HML1_11q13.4"; transcript_id "HML1_11q13.4"; locus "HML1_11q13.4"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0081"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "5"; repStart "0"; chr11 rmsk exon 73939531 73943269 21322 - . gene_id "HML1_11q13.4"; transcript_id "HML1_11q13.4"; locus "HML1_11q13.4"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0081"; repClass "LTR"; repEnd "6056"; repFamily "ERVK"; repLeft "2027"; repStart "-40"; chr11 rmsk exon 73943577 73946851 21322 - . gene_id "HML1_11q13.4"; transcript_id "HML1_11q13.4"; locus "HML1_11q13.4"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0081"; repClass "LTR"; repEnd "3364"; repFamily "ERVK"; repLeft "1"; repStart "-2732"; chr11 rmsk exon 73946852 73947474 3503 - . gene_id "HML1_11q13.4"; transcript_id "HML1_11q13.4"; locus "HML1_11q13.4"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0081"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "16"; repStart "0"; ### HERVL18_11q13.4 ### chr11 rmsk gene 74540370 74544495 . + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0110"; model_cov "4027"; model_pct "66.6"; chr11 rmsk exon 74540370 74540760 1938 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 74540779 74541700 2697 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "1622"; repFamily "ERVL"; repLeft "-4425"; repStart "13"; chr11 rmsk exon 74541726 74541985 1197 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr11 rmsk exon 74541983 74542349 2354 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2963"; repStart "2718"; chr11 rmsk exon 74542338 74543354 6227 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "-2111"; repStart "2941"; chr11 rmsk exon 74543343 74544058 4617 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5323"; chr11 rmsk exon 74544124 74544495 1954 + . gene_id "HERVL18_11q13.4"; transcript_id "HERVL18_11q13.4"; locus "HERVL18_11q13.4"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0110"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP3_11q13.4 ### chr11 rmsk gene 74869317 74877162 . + . gene_id "HUERSP3_11q13.4"; transcript_id "HUERSP3_11q13.4"; locus "HUERSP3_11q13.4"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0141"; model_cov "6895"; model_pct "77.3"; chr11 rmsk exon 74869317 74869984 4194 + . gene_id "HUERSP3_11q13.4"; transcript_id "HUERSP3_11q13.4"; locus "HUERSP3_11q13.4"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0141"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 74869998 74873955 35825 + . gene_id "HUERSP3_11q13.4"; transcript_id "HUERSP3_11q13.4"; locus "HUERSP3_11q13.4"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0141"; repClass "LTR"; repEnd "4291"; repFamily "ERV1"; repLeft "-4628"; repStart "15"; chr11 rmsk exon 74874263 74875596 35825 + . gene_id "HUERSP3_11q13.4"; transcript_id "HUERSP3_11q13.4"; locus "HUERSP3_11q13.4"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0141"; repClass "LTR"; repEnd "5629"; repFamily "ERV1"; repLeft "-3290"; repStart "4292"; chr11 rmsk exon 74875875 74877162 35825 + . gene_id "HUERSP3_11q13.4"; transcript_id "HUERSP3_11q13.4"; locus "HUERSP3_11q13.4"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0141"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "5630"; ### ERVLE_11q13.4g ### chr11 rmsk gene 74912656 74918274 . + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2555"; model_cov "2953"; model_pct "52.1"; chr11 rmsk exon 74912656 74912745 251 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "1764"; repFamily "ERVL"; repLeft "-3903"; repStart "1673"; chr11 rmsk exon 74912919 74913973 3323 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "2908"; repFamily "ERVL"; repLeft "-2759"; repStart "1860"; chr11 rmsk exon 74914282 74914502 3323 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "3132"; repFamily "ERVL"; repLeft "-2535"; repStart "2909"; chr11 rmsk exon 74914671 74914825 663 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "-2339"; repStart "3179"; chr11 rmsk exon 74914998 74915685 2360 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "4345"; repFamily "ERVL"; repLeft "-1322"; repStart "3560"; chr11 rmsk exon 74917629 74918274 2126 + . gene_id "ERVLE_11q13.4g"; transcript_id "ERVLE_11q13.4g"; locus "ERVLE_11q13.4g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2555"; repClass "LTR"; repEnd "5291"; repFamily "ERVL"; repLeft "-376"; repStart "4634"; ### HERVL40_11q13.4b ### chr11 rmsk gene 74980696 74981724 . + . gene_id "HERVL40_11q13.4b"; transcript_id "HERVL40_11q13.4b"; locus "HERVL40_11q13.4b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0296"; model_cov "558"; model_pct "10.1"; chr11 rmsk exon 74980696 74980931 820 + . gene_id "HERVL40_11q13.4b"; transcript_id "HERVL40_11q13.4b"; locus "HERVL40_11q13.4b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0296"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-5120"; repStart "170"; chr11 rmsk exon 74980968 74981313 1191 + . gene_id "HERVL40_11q13.4b"; transcript_id "HERVL40_11q13.4b"; locus "HERVL40_11q13.4b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0296"; repClass "LTR"; repEnd "733"; repFamily "ERVL"; repLeft "-4797"; repStart "415"; chr11 rmsk exon 74981441 74981724 1054 + . gene_id "HERVL40_11q13.4b"; transcript_id "HERVL40_11q13.4b"; locus "HERVL40_11q13.4b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0296"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-19"; repStart "161"; ### HARLEQUIN_11q13.4 ### chr11 rmsk gene 75039924 75047147 . + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0132"; model_cov "5681"; model_pct "82.4"; chr11 rmsk exon 75039924 75040379 3289 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 75040758 75044423 27394 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "-2947"; repStart "263"; chr11 rmsk exon 75044404 75044739 2205 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "-2917"; repStart "3644"; chr11 rmsk exon 75044719 75044835 783 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "-2728"; repStart "4069"; chr11 rmsk exon 75044825 75045381 3517 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "5087"; repFamily "ERV1"; repLeft "-1809"; repStart "4541"; chr11 rmsk exon 75045702 75045758 3517 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "5144"; repFamily "ERV1"; repLeft "-1752"; repStart "5088"; chr11 rmsk exon 75045726 75046689 7594 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5937"; chr11 rmsk exon 75046690 75047147 3354 + . gene_id "HARLEQUIN_11q13.4"; transcript_id "HARLEQUIN_11q13.4"; locus "HARLEQUIN_11q13.4"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0132"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_11q13.4h ### chr11 rmsk gene 75076045 75077842 . - . gene_id "ERVLE_11q13.4h"; transcript_id "ERVLE_11q13.4h"; locus "ERVLE_11q13.4h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2556"; model_cov "1742"; model_pct "30.7"; chr11 rmsk exon 75076045 75076211 752 - . gene_id "ERVLE_11q13.4h"; transcript_id "ERVLE_11q13.4h"; locus "ERVLE_11q13.4h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2556"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "4750"; repStart "-749"; chr11 rmsk exon 75076282 75077842 5335 - . gene_id "ERVLE_11q13.4h"; transcript_id "ERVLE_11q13.4h"; locus "ERVLE_11q13.4h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2556"; repClass "LTR"; repEnd "4729"; repFamily "ERVL"; repLeft "3155"; repStart "-938"; ### ERVLE_11q13.5a ### chr11 rmsk gene 75577926 75580506 . + . gene_id "ERVLE_11q13.5a"; transcript_id "ERVLE_11q13.5a"; locus "ERVLE_11q13.5a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2557"; model_cov "2478"; model_pct "43.7"; chr11 rmsk exon 75577926 75578681 4520 + . gene_id "ERVLE_11q13.5a"; transcript_id "ERVLE_11q13.5a"; locus "ERVLE_11q13.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2557"; repClass "LTR"; repEnd "1615"; repFamily "ERVL"; repLeft "-4052"; repStart "845"; chr11 rmsk exon 75578934 75580506 4520 + . gene_id "ERVLE_11q13.5a"; transcript_id "ERVLE_11q13.5a"; locus "ERVLE_11q13.5a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2557"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2330"; repStart "1629"; ### HERVL74_11q13.5a ### chr11 rmsk gene 75711156 75713343 . + . gene_id "HERVL74_11q13.5a"; transcript_id "HERVL74_11q13.5a"; locus "HERVL74_11q13.5a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0075"; model_cov "2308"; model_pct "40.6"; chr11 rmsk exon 75711156 75712681 5509 + . gene_id "HERVL74_11q13.5a"; transcript_id "HERVL74_11q13.5a"; locus "HERVL74_11q13.5a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0075"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "-2345"; repStart "1693"; chr11 rmsk exon 75712663 75712828 880 + . gene_id "HERVL74_11q13.5a"; transcript_id "HERVL74_11q13.5a"; locus "HERVL74_11q13.5a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0075"; repClass "LTR"; repEnd "3641"; repFamily "ERVL"; repLeft "-2044"; repStart "3479"; chr11 rmsk exon 75712836 75712988 671 + . gene_id "HERVL74_11q13.5a"; transcript_id "HERVL74_11q13.5a"; locus "HERVL74_11q13.5a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0075"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3922"; chr11 rmsk exon 75712977 75713343 554 + . gene_id "HERVL74_11q13.5a"; transcript_id "HERVL74_11q13.5a"; locus "HERVL74_11q13.5a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0075"; repClass "LTR"; repEnd "4934"; repFamily "ERVL"; repLeft "-751"; repStart "4586"; ### HERVL74_11q13.5b ### chr11 rmsk gene 76262192 76263588 . + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0076"; model_cov "1405"; model_pct "24.7"; chr11 rmsk exon 76262192 76263085 4814 + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0076"; repClass "LTR"; repEnd "3327"; repFamily "ERVL"; repLeft "-2358"; repStart "2438"; chr11 rmsk exon 76263081 76263245 921 + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0076"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3479"; chr11 rmsk exon 76263250 76263408 726 + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0076"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3913"; chr11 rmsk exon 76263403 76263502 417 + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0076"; repClass "LTR"; repEnd "4693"; repFamily "ERVL"; repLeft "-992"; repStart "4592"; chr11 rmsk exon 76263504 76263588 264 + . gene_id "HERVL74_11q13.5b"; transcript_id "HERVL74_11q13.5b"; locus "HERVL74_11q13.5b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0076"; repClass "LTR"; repEnd "4735"; repFamily "ERVL"; repLeft "-950"; repStart "4644"; ### ERVLE_11q13.5b ### chr11 rmsk gene 76416120 76417256 . + . gene_id "ERVLE_11q13.5b"; transcript_id "ERVLE_11q13.5b"; locus "ERVLE_11q13.5b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2558"; model_cov "582"; model_pct "10.3"; chr11 rmsk exon 76416120 76416219 250 + . gene_id "ERVLE_11q13.5b"; transcript_id "ERVLE_11q13.5b"; locus "ERVLE_11q13.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2558"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "-5541"; repStart "26"; chr11 rmsk exon 76416705 76416973 632 + . gene_id "ERVLE_11q13.5b"; transcript_id "ERVLE_11q13.5b"; locus "ERVLE_11q13.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2558"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-5273"; repStart "127"; chr11 rmsk exon 76417042 76417256 529 + . gene_id "ERVLE_11q13.5b"; transcript_id "ERVLE_11q13.5b"; locus "ERVLE_11q13.5b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2558"; repClass "LTR"; repEnd "594"; repFamily "ERVL"; repLeft "-5073"; repStart "379"; ### ERVLE_11q13.5c ### chr11 rmsk gene 76725656 76729039 . - . gene_id "ERVLE_11q13.5c"; transcript_id "ERVLE_11q13.5c"; locus "ERVLE_11q13.5c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2559"; model_cov "3696"; model_pct "65.2"; chr11 rmsk exon 76725656 76727677 3069 - . gene_id "ERVLE_11q13.5c"; transcript_id "ERVLE_11q13.5c"; locus "ERVLE_11q13.5c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2559"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "2780"; repStart "-532"; chr11 rmsk exon 76727769 76729039 3069 - . gene_id "ERVLE_11q13.5c"; transcript_id "ERVLE_11q13.5c"; locus "ERVLE_11q13.5c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2559"; repClass "LTR"; repEnd "2933"; repFamily "ERVL"; repLeft "1592"; repStart "-2734"; ### HERVL74_11q13.5c ### chr11 rmsk gene 77032785 77034107 . + . gene_id "HERVL74_11q13.5c"; transcript_id "HERVL74_11q13.5c"; locus "HERVL74_11q13.5c"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0077"; model_cov "955"; model_pct "16.8"; chr11 rmsk exon 77032785 77033171 2702 + . gene_id "HERVL74_11q13.5c"; transcript_id "HERVL74_11q13.5c"; locus "HERVL74_11q13.5c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0077"; repClass "LTR"; repEnd "1491"; repFamily "ERVL"; repLeft "-4194"; repStart "1077"; chr11 rmsk exon 77033452 77033672 2702 + . gene_id "HERVL74_11q13.5c"; transcript_id "HERVL74_11q13.5c"; locus "HERVL74_11q13.5c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0077"; repClass "LTR"; repEnd "1701"; repFamily "ERVL"; repLeft "-3984"; repStart "1492"; chr11 rmsk exon 77033799 77034107 1276 + . gene_id "HERVL74_11q13.5c"; transcript_id "HERVL74_11q13.5c"; locus "HERVL74_11q13.5c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0077"; repClass "LTR"; repEnd "2040"; repFamily "ERVL"; repLeft "-3645"; repStart "1708"; ### ERVLE_11q13.5d ### chr11 rmsk gene 77273500 77274153 . + . gene_id "ERVLE_11q13.5d"; transcript_id "ERVLE_11q13.5d"; locus "ERVLE_11q13.5d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2561"; model_cov "664"; model_pct "11.7"; chr11 rmsk exon 77273500 77274153 1086 + . gene_id "ERVLE_11q13.5d"; transcript_id "ERVLE_11q13.5d"; locus "ERVLE_11q13.5d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2561"; repClass "LTR"; repEnd "1565"; repFamily "ERVL"; repLeft "-4102"; repStart "901"; ### MER61_11q14.1a ### chr11 rmsk gene 77519761 77522473 . - . gene_id "MER61_11q14.1a"; transcript_id "MER61_11q14.1a"; locus "MER61_11q14.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0267"; model_cov "2060"; model_pct "39.5"; chr11 rmsk exon 77519761 77520169 2010 - . gene_id "MER61_11q14.1a"; transcript_id "MER61_11q14.1a"; locus "MER61_11q14.1a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0267"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr11 rmsk exon 77520180 77520216 13284 - . gene_id "MER61_11q14.1a"; transcript_id "MER61_11q14.1a"; locus "MER61_11q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0267"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5161"; repStart "0"; chr11 rmsk exon 77520249 77521247 13284 - . gene_id "MER61_11q14.1a"; transcript_id "MER61_11q14.1a"; locus "MER61_11q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0267"; repClass "LTR"; repEnd "5160"; repFamily "ERV1"; repLeft "4097"; repStart "-57"; chr11 rmsk exon 77521543 77522473 13284 - . gene_id "MER61_11q14.1a"; transcript_id "MER61_11q14.1a"; locus "MER61_11q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0267"; repClass "LTR"; repEnd "4096"; repFamily "ERV1"; repLeft "3155"; repStart "-1121"; ### HERVH_11q14.1a ### chr11 rmsk gene 77550175 77555707 . + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0873"; model_cov "4538"; model_pct "58.8"; chr11 rmsk exon 77550175 77550616 2411 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 77550617 77551078 1017 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr11 rmsk exon 77551105 77554651 21321 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "4292"; repFamily "ERV1"; repLeft "-3421"; repStart "802"; chr11 rmsk exon 77554679 77554737 282 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr11 rmsk exon 77554739 77555269 3464 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr11 rmsk exon 77555270 77555707 2434 + . gene_id "HERVH_11q14.1a"; transcript_id "HERVH_11q14.1a"; locus "HERVH_11q14.1a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0873"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV3_11q14.1 ### chr11 rmsk gene 77570922 77575997 . + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; category "insert*"; intModel "HERV3-int"; locid "HERV3-int_0048"; model_cov "2498"; model_pct "29.6"; chr11 rmsk exon 77570922 77571455 3998 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr11 rmsk exon 77571456 77571917 2138 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "173"; repFamily "ERV1"; repLeft "-8253"; repStart "-308"; chr11 rmsk exon 77571978 77573171 6970 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0048"; prev_strand "-"; repClass "LTR"; repEnd "4135"; repFamily "ERV1"; repLeft "2928"; repStart "-4291"; chr11 rmsk exon 77573171 77573696 8051 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "5696"; repFamily "ERV1"; repLeft "-2730"; repStart "5159"; chr11 rmsk exon 77574007 77574827 8051 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "6542"; repFamily "ERV1"; repLeft "-1884"; repStart "5697"; chr11 rmsk exon 77574827 77575457 3582 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "7791"; chr11 rmsk exon 77575460 77575997 3929 + . gene_id "HERV3_11q14.1"; transcript_id "HERV3_11q14.1"; locus "HERV3_11q14.1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0048"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_11q14.1 ### chr11 rmsk gene 77576248 77585610 . + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0544"; model_cov "6902"; model_pct "100.0"; chr11 rmsk exon 77576248 77576625 2687 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0544"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "-44"; repStart "28"; chr11 rmsk exon 77576806 77576860 334 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0544"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "418"; chr11 rmsk exon 77576864 77577728 10704 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "983"; repFamily "ERV1"; repLeft "-5615"; repStart "1"; chr11 rmsk exon 77578211 77579591 10704 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "2537"; repFamily "ERV1"; repLeft "-4061"; repStart "986"; chr11 rmsk exon 77580130 77580503 10704 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "3121"; repFamily "ERV1"; repLeft "-3477"; repStart "2548"; chr11 rmsk exon 77580794 77581693 11448 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-2080"; repStart "2806"; chr11 rmsk exon 77582279 77583621 11448 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "5827"; repFamily "ERV1"; repLeft "-771"; repStart "4519"; chr11 rmsk exon 77583913 77584302 11448 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "6231"; repFamily "ERV1"; repLeft "-367"; repStart "5828"; chr11 rmsk exon 77584786 77585153 2621 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0544"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6223"; chr11 rmsk exon 77585161 77585610 3091 + . gene_id "MER4_11q14.1"; transcript_id "MER4_11q14.1"; locus "MER4_11q14.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0544"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_11q14.1a ### chr11 rmsk gene 77641221 77644245 . + . gene_id "MER41_11q14.1a"; transcript_id "MER41_11q14.1a"; locus "MER41_11q14.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0373"; model_cov "2303"; model_pct "38.7"; chr11 rmsk exon 77641221 77641404 4861 + . gene_id "MER41_11q14.1a"; transcript_id "MER41_11q14.1a"; locus "MER41_11q14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0373"; repClass "LTR"; repEnd "-1407"; repFamily "ERV1"; repLeft "-7353"; repStart "-1590"; chr11 rmsk exon 77641702 77643126 6423 + . gene_id "MER41_11q14.1a"; transcript_id "MER41_11q14.1a"; locus "MER41_11q14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0373"; repClass "LTR"; repEnd "1684"; repFamily "ERV1"; repLeft "-4262"; repStart "185"; chr11 rmsk exon 77643434 77643659 6423 + . gene_id "MER41_11q14.1a"; transcript_id "MER41_11q14.1a"; locus "MER41_11q14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0373"; repClass "LTR"; repEnd "2009"; repFamily "ERV1"; repLeft "-3937"; repStart "1685"; chr11 rmsk exon 77643951 77644245 6423 + . gene_id "MER41_11q14.1a"; transcript_id "MER41_11q14.1a"; locus "MER41_11q14.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0373"; repClass "LTR"; repEnd "2307"; repFamily "ERV1"; repLeft "-3639"; repStart "2010"; ### HERVW_11q14.1 ### chr11 rmsk gene 77858328 77863478 . - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0217"; model_cov "4395"; model_pct "51.0"; chr11 rmsk exon 77858328 77858623 2361 - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0217"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "1"; repStart "-455"; chr11 rmsk exon 77858624 77858915 2508 - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0217"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr11 rmsk exon 77858906 77858944 289 - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0217"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr11 rmsk exon 77858938 77862953 34184 - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0217"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "1953"; repStart "-2607"; chr11 rmsk exon 77862984 77863478 3773 - . gene_id "HERVW_11q14.1"; transcript_id "HERVW_11q14.1"; locus "HERVW_11q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0217"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "258"; repStart "0"; ### ERVLE_11q14.1a ### chr11 rmsk gene 77998390 78000351 . - . gene_id "ERVLE_11q14.1a"; transcript_id "ERVLE_11q14.1a"; locus "ERVLE_11q14.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2562"; model_cov "852"; model_pct "15.0"; chr11 rmsk exon 77998390 77998542 410 - . gene_id "ERVLE_11q14.1a"; transcript_id "ERVLE_11q14.1a"; locus "ERVLE_11q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2562"; repClass "LTR"; repEnd "4925"; repFamily "ERVL"; repLeft "4770"; repStart "-742"; chr11 rmsk exon 77998687 77999010 1087 - . gene_id "ERVLE_11q14.1a"; transcript_id "ERVLE_11q14.1a"; locus "ERVLE_11q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2562"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "4244"; repStart "-1074"; chr11 rmsk exon 78000005 78000351 1406 - . gene_id "ERVLE_11q14.1a"; transcript_id "ERVLE_11q14.1a"; locus "ERVLE_11q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2562"; repClass "LTR"; repEnd "4248"; repFamily "ERVL"; repLeft "3900"; repStart "-1419"; ### HERVH_11q14.1b ### chr11 rmsk gene 78080836 78087032 . + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0874"; model_cov "4543"; model_pct "58.9"; chr11 rmsk exon 78080836 78081299 3328 + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0874"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 78081300 78085065 9528 + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0874"; repClass "LTR"; repEnd "3876"; repFamily "ERV1"; repLeft "-3837"; repStart "1"; chr11 rmsk exon 78085062 78085581 2845 + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0874"; repClass "LTR"; repEnd "7557"; repFamily "ERV1"; repLeft "-156"; repStart "7038"; chr11 rmsk exon 78086408 78086562 328 + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0874"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7564"; chr11 rmsk exon 78086563 78087032 3422 + . gene_id "HERVH_11q14.1b"; transcript_id "HERVH_11q14.1b"; locus "HERVH_11q14.1b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0874"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_11q14.1 ### chr11 rmsk gene 78607893 78613676 . + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1201"; model_cov "4246"; model_pct "74.3"; chr11 rmsk exon 78607893 78608051 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "-4089"; repStart "1463"; chr11 rmsk exon 78608127 78609175 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "2653"; repFamily "ERVL"; repLeft "-3061"; repStart "1626"; chr11 rmsk exon 78609473 78610104 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "3275"; repFamily "ERVL"; repLeft "-2439"; repStart "2654"; chr11 rmsk exon 78610408 78610637 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "3506"; repFamily "ERVL"; repLeft "-2208"; repStart "3276"; chr11 rmsk exon 78610985 78611049 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "3547"; repFamily "ERVL"; repLeft "-2167"; repStart "3507"; chr11 rmsk exon 78611130 78613222 20728 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3548"; chr11 rmsk exon 78613223 78613676 2395 + . gene_id "ERVLB4_11q14.1"; transcript_id "ERVLB4_11q14.1"; locus "ERVLB4_11q14.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1201"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-104"; repStart "1"; ### HERVL_11q14.1a ### chr11 rmsk gene 78618484 78624985 . + . gene_id "HERVL_11q14.1a"; transcript_id "HERVL_11q14.1a"; locus "HERVL_11q14.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0915"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 78618484 78618927 3531 + . gene_id "HERVL_11q14.1a"; transcript_id "HERVL_11q14.1a"; locus "HERVL_11q14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0915"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 78618928 78624549 45750 + . gene_id "HERVL_11q14.1a"; transcript_id "HERVL_11q14.1a"; locus "HERVL_11q14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0915"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 78624550 78624985 3508 + . gene_id "HERVL_11q14.1a"; transcript_id "HERVL_11q14.1a"; locus "HERVL_11q14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0915"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVL_11q14.1b ### chr11 rmsk gene 79124203 79128887 . + . gene_id "HERVL_11q14.1b"; transcript_id "HERVL_11q14.1b"; locus "HERVL_11q14.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0916"; model_cov "3926"; model_pct "69.4"; chr11 rmsk exon 79124203 79124616 3049 + . gene_id "HERVL_11q14.1b"; transcript_id "HERVL_11q14.1b"; locus "HERVL_11q14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0916"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; chr11 rmsk exon 79124924 79124974 314 + . gene_id "HERVL_11q14.1b"; transcript_id "HERVL_11q14.1b"; locus "HERVL_11q14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0916"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; chr11 rmsk exon 79124975 79128887 31540 + . gene_id "HERVL_11q14.1b"; transcript_id "HERVL_11q14.1b"; locus "HERVL_11q14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0916"; repClass "LTR"; repEnd "3927"; repFamily "ERVL"; repLeft "-1727"; repStart "1"; ### HERVL_11q14.1c ### chr11 rmsk gene 79136202 79138339 . + . gene_id "HERVL_11q14.1c"; transcript_id "HERVL_11q14.1c"; locus "HERVL_11q14.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0917"; model_cov "1742"; model_pct "30.8"; chr11 rmsk exon 79136202 79137922 13654 + . gene_id "HERVL_11q14.1c"; transcript_id "HERVL_11q14.1c"; locus "HERVL_11q14.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0917"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3912"; chr11 rmsk exon 79137923 79138339 3338 + . gene_id "HERVL_11q14.1c"; transcript_id "HERVL_11q14.1c"; locus "HERVL_11q14.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0917"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; ### HML5_11q14.1 ### chr11 rmsk gene 81032643 81040395 . + . gene_id "HML5_11q14.1"; transcript_id "HML5_11q14.1"; locus "HML5_11q14.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0080"; model_cov "6836"; model_pct "100.0"; chr11 rmsk exon 81032643 81033111 2970 + . gene_id "HML5_11q14.1"; transcript_id "HML5_11q14.1"; locus "HML5_11q14.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0080"; repClass "LTR"; repEnd "506"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr11 rmsk exon 81033116 81039929 50354 + . gene_id "HML5_11q14.1"; transcript_id "HML5_11q14.1"; locus "HML5_11q14.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0080"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 81039930 81040395 3013 + . gene_id "HML5_11q14.1"; transcript_id "HML5_11q14.1"; locus "HML5_11q14.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0080"; repClass "LTR"; repEnd "505"; repFamily "ERVK"; repLeft "-2"; repStart "1"; ### HERVH_11q14.1c ### chr11 rmsk gene 81122403 81127454 . + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0875"; model_cov "4913"; model_pct "63.7"; chr11 rmsk exon 81122403 81122516 901 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "337"; chr11 rmsk exon 81122517 81125199 14298 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr11 rmsk exon 81125186 81125332 884 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 81125323 81125820 3067 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 81125823 81126485 4618 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 81126487 81126700 1348 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 81126699 81127076 2368 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 81127078 81127454 2357 + . gene_id "HERVH_11q14.1c"; transcript_id "HERVH_11q14.1c"; locus "HERVH_11q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0875"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "2"; ### HERVL_11q14.1d ### chr11 rmsk gene 81170865 81172965 . - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0918"; model_cov "1076"; model_pct "19.0"; chr11 rmsk exon 81170865 81171352 3215 - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0918"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 81171353 81172199 6229 - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0918"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4806"; repStart "0"; chr11 rmsk exon 81172196 81172424 1726 - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0918"; repClass "LTR"; repEnd "229"; repFamily "ERVL"; repLeft "1"; repStart "-5425"; chr11 rmsk exon 81172425 81172471 2914 - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0918"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "382"; repStart "0"; chr11 rmsk exon 81172590 81172965 2914 - . gene_id "HERVL_11q14.1d"; transcript_id "HERVL_11q14.1d"; locus "HERVL_11q14.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0918"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "2"; repStart "-63"; ### HERVP71A_11q14.1 ### chr11 rmsk gene 81196760 81202566 . + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0056"; model_cov "4788"; model_pct "63.1"; chr11 rmsk exon 81196760 81197218 3155 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 81197236 81197632 2575 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7144"; repStart "42"; chr11 rmsk exon 81197614 81198913 9651 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "1647"; repFamily "ERV1"; repLeft "-5943"; repStart "353"; chr11 rmsk exon 81199049 81199465 22009 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "4925"; repFamily "ERV1"; repLeft "-2665"; repStart "4499"; chr11 rmsk exon 81199510 81202105 22009 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "4926"; chr11 rmsk exon 81202106 81202566 3304 + . gene_id "HERVP71A_11q14.1"; transcript_id "HERVP71A_11q14.1"; locus "HERVP71A_11q14.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0056"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_11q14.1b ### chr11 rmsk gene 81276391 81278629 . + . gene_id "MER61_11q14.1b"; transcript_id "MER61_11q14.1b"; locus "MER61_11q14.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0268"; model_cov "1839"; model_pct "35.3"; chr11 rmsk exon 81276391 81278224 12295 + . gene_id "MER61_11q14.1b"; transcript_id "MER61_11q14.1b"; locus "MER61_11q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0268"; repClass "LTR"; repEnd "5209"; repFamily "ERV1"; repLeft "-8"; repStart "3370"; chr11 rmsk exon 81278225 81278629 2177 + . gene_id "MER61_11q14.1b"; transcript_id "MER61_11q14.1b"; locus "MER61_11q14.1b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0268"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-3"; repStart "2"; ### MER41_11q14.1b ### chr11 rmsk gene 81634182 81641058 . + . gene_id "MER41_11q14.1b"; transcript_id "MER41_11q14.1b"; locus "MER41_11q14.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0374"; model_cov "5941"; model_pct "99.9"; chr11 rmsk exon 81634182 81634722 4020 + . gene_id "MER41_11q14.1b"; transcript_id "MER41_11q14.1b"; locus "MER41_11q14.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0374"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 81634809 81640508 25753 + . gene_id "MER41_11q14.1b"; transcript_id "MER41_11q14.1b"; locus "MER41_11q14.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0374"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr11 rmsk exon 81640509 81641058 3914 + . gene_id "MER41_11q14.1b"; transcript_id "MER41_11q14.1b"; locus "MER41_11q14.1b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0374"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_11q14.1b ### chr11 rmsk gene 81708387 81710816 . + . gene_id "ERVLE_11q14.1b"; transcript_id "ERVLE_11q14.1b"; locus "ERVLE_11q14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2563"; model_cov "1316"; model_pct "23.2"; chr11 rmsk exon 81708387 81708705 409 + . gene_id "ERVLE_11q14.1b"; transcript_id "ERVLE_11q14.1b"; locus "ERVLE_11q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2563"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-5232"; repStart "129"; chr11 rmsk exon 81709149 81710131 1331 + . gene_id "ERVLE_11q14.1b"; transcript_id "ERVLE_11q14.1b"; locus "ERVLE_11q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2563"; repClass "LTR"; repEnd "1436"; repFamily "ERVL"; repLeft "-4231"; repStart "488"; chr11 rmsk exon 81710752 81710816 271 + . gene_id "ERVLE_11q14.1b"; transcript_id "ERVLE_11q14.1b"; locus "ERVLE_11q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2563"; repClass "LTR"; repEnd "2797"; repFamily "ERVL"; repLeft "-2870"; repStart "2735"; ### HERVH_11q14.1d ### chr11 rmsk gene 81806220 81812679 . + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0876"; model_cov "5758"; model_pct "74.7"; chr11 rmsk exon 81806220 81806566 1898 + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0876"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 81806569 81811674 25954 + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0876"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr11 rmsk exon 81811676 81811891 1391 + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0876"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 81811890 81812268 2429 + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0876"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 81812271 81812679 2605 + . gene_id "HERVH_11q14.1d"; transcript_id "HERVH_11q14.1d"; locus "HERVH_11q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0876"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; ### HARLEQUIN_11q14.1 ### chr11 rmsk gene 81951192 81956834 . + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0133"; model_cov "4411"; model_pct "64.0"; chr11 rmsk exon 81951192 81951689 2559 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-1"; repStart "-19"; chr11 rmsk exon 81952069 81953226 8143 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "1421"; repFamily "ERV1"; repLeft "-5475"; repStart "263"; chr11 rmsk exon 81953215 81953978 5582 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "-4322"; repStart "1808"; chr11 rmsk exon 81953967 81956221 14615 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "5710"; repFamily "ERV1"; repLeft "-1186"; repStart "3340"; chr11 rmsk exon 81956216 81956336 673 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6779"; chr11 rmsk exon 81956338 81956834 2683 + . gene_id "HARLEQUIN_11q14.1"; transcript_id "HARLEQUIN_11q14.1"; locus "HARLEQUIN_11q14.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0133"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "-18"; ### HERVH_11q14.1e ### chr11 rmsk gene 82025408 82031014 . + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0877"; model_cov "4952"; model_pct "64.2"; chr11 rmsk exon 82025408 82025858 3261 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 82025861 82028641 14040 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 82028621 82028767 801 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 82028758 82029256 3353 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 82029259 82029449 1317 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-3031"; repStart "4488"; chr11 rmsk exon 82029434 82030287 6196 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "6622"; repFamily "ERV1"; repLeft "-1091"; repStart "5769"; chr11 rmsk exon 82030291 82030558 1688 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7453"; chr11 rmsk exon 82030559 82031014 3185 + . gene_id "HERVH_11q14.1e"; transcript_id "HERVH_11q14.1e"; locus "HERVH_11q14.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0877"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_11q14.1e ### chr11 rmsk gene 82178748 82183223 . + . gene_id "HERVL_11q14.1e"; transcript_id "HERVL_11q14.1e"; locus "HERVL_11q14.1e"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0919"; model_cov "624"; model_pct "11.0"; chr11 rmsk exon 82178748 82178915 338 + . gene_id "HERVL_11q14.1e"; transcript_id "HERVL_11q14.1e"; locus "HERVL_11q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0919"; repClass "LTR"; repEnd "4112"; repFamily "ERVL"; repLeft "-1542"; repStart "3941"; chr11 rmsk exon 82180810 82180961 366 + . gene_id "HERVL_11q14.1e"; transcript_id "HERVL_11q14.1e"; locus "HERVL_11q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0919"; repClass "LTR"; repEnd "4614"; repFamily "ERVL"; repLeft "-1040"; repStart "4454"; chr11 rmsk exon 82182949 82183223 304 + . gene_id "HERVL_11q14.1e"; transcript_id "HERVL_11q14.1e"; locus "HERVL_11q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0919"; repClass "LTR"; repEnd "5091"; repFamily "ERVL"; repLeft "-563"; repStart "4798"; ### ERV316A3_11q14.1a ### chr11 rmsk gene 82214944 82217221 . - . gene_id "ERV316A3_11q14.1a"; transcript_id "ERV316A3_11q14.1a"; locus "ERV316A3_11q14.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1972"; model_cov "2064"; model_pct "39.5"; chr11 rmsk exon 82214944 82215335 1121 - . gene_id "ERV316A3_11q14.1a"; transcript_id "ERV316A3_11q14.1a"; locus "ERV316A3_11q14.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1972"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "1"; repStart "-45"; chr11 rmsk exon 82215336 82215788 1009 - . gene_id "ERV316A3_11q14.1a"; transcript_id "ERV316A3_11q14.1a"; locus "ERV316A3_11q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1972"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4775"; repStart "0"; chr11 rmsk exon 82215788 82217221 1332 - . gene_id "ERV316A3_11q14.1a"; transcript_id "ERV316A3_11q14.1a"; locus "ERV316A3_11q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1972"; repClass "LTR"; repEnd "2084"; repFamily "ERVL"; repLeft "471"; repStart "-3142"; ### ERV316A3_11q14.1b ### chr11 rmsk gene 82266965 82267901 . + . gene_id "ERV316A3_11q14.1b"; transcript_id "ERV316A3_11q14.1b"; locus "ERV316A3_11q14.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1973"; model_cov "746"; model_pct "14.3"; chr11 rmsk exon 82266965 82267752 1129 + . gene_id "ERV316A3_11q14.1b"; transcript_id "ERV316A3_11q14.1b"; locus "ERV316A3_11q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1973"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4480"; chr11 rmsk exon 82267755 82267901 385 + . gene_id "ERV316A3_11q14.1b"; transcript_id "ERV316A3_11q14.1b"; locus "ERV316A3_11q14.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1973"; repClass "LTR"; repEnd "195"; repFamily "ERVL"; repLeft "-243"; repStart "42"; ### HERV9_11q14.1 ### chr11 rmsk gene 82625682 82629395 . + . gene_id "HERV9_11q14.1"; transcript_id "HERV9_11q14.1"; locus "HERV9_11q14.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0132"; model_cov "3059"; model_pct "36.3"; chr11 rmsk exon 82625682 82627202 11867 + . gene_id "HERV9_11q14.1"; transcript_id "HERV9_11q14.1"; locus "HERV9_11q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0132"; repClass "LTR"; repEnd "5423"; repFamily "ERV1"; repLeft "-3013"; repStart "3908"; chr11 rmsk exon 82627203 82628729 11887 + . gene_id "HERV9_11q14.1"; transcript_id "HERV9_11q14.1"; locus "HERV9_11q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0132"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6892"; chr11 rmsk exon 82628730 82629395 3284 + . gene_id "HERV9_11q14.1"; transcript_id "HERV9_11q14.1"; locus "HERV9_11q14.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0132"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "-234"; repStart "-306"; ### HUERSP3B_11q14.1 ### chr11 rmsk gene 82675713 82683502 . - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0094"; model_cov "8877"; model_pct "100.0"; chr11 rmsk exon 82675713 82676316 3264 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "7"; repStart "0"; chr11 rmsk exon 82676317 82680125 17867 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "7418"; repFamily "ERV1"; repLeft "868"; repStart "0"; chr11 rmsk exon 82680539 82682499 8110 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "664"; repStart "-4776"; chr11 rmsk exon 82682532 82682809 8110 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "663"; repFamily "ERV1"; repLeft "409"; repStart "-6755"; chr11 rmsk exon 82682796 82682896 645 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "1"; repStart "-7322"; chr11 rmsk exon 82682897 82683502 3209 - . gene_id "HUERSP3B_11q14.1"; transcript_id "HUERSP3B_11q14.1"; locus "HUERSP3B_11q14.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0094"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "13"; repStart "0"; ### HERV30_11q14.1 ### chr11 rmsk gene 83216719 83220622 . - . gene_id "HERV30_11q14.1"; transcript_id "HERV30_11q14.1"; locus "HERV30_11q14.1"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0017"; model_cov "3577"; model_pct "43.3"; chr11 rmsk exon 83216719 83216857 1068 - . gene_id "HERV30_11q14.1"; transcript_id "HERV30_11q14.1"; locus "HERV30_11q14.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0017"; repClass "LTR"; repEnd "141"; repFamily "ERV1"; repLeft "3"; repStart "-581"; chr11 rmsk exon 83216860 83217254 2757 - . gene_id "HERV30_11q14.1"; transcript_id "HERV30_11q14.1"; locus "HERV30_11q14.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0017"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7866"; repStart "0"; chr11 rmsk exon 83217278 83220458 23192 - . gene_id "HERV30_11q14.1"; transcript_id "HERV30_11q14.1"; locus "HERV30_11q14.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0017"; repClass "LTR"; repEnd "3187"; repFamily "ERV1"; repLeft "1"; repStart "-5070"; chr11 rmsk exon 83220459 83220622 881 - . gene_id "HERV30_11q14.1"; transcript_id "HERV30_11q14.1"; locus "HERV30_11q14.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0017"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "552"; repStart "0"; ### HERVH_11q14.1f ### chr11 rmsk gene 83341985 83345578 . - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0878"; model_cov "2664"; model_pct "34.5"; chr11 rmsk exon 83341985 83342391 2674 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 83342392 83342768 2257 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 83342769 83342984 1305 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 83343011 83344641 10369 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "2404"; repFamily "ERV1"; repLeft "793"; repStart "-5309"; chr11 rmsk exon 83344717 83345184 2775 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chr11 rmsk exon 83345187 83345578 2633 - . gene_id "HERVH_11q14.1f"; transcript_id "HERVH_11q14.1f"; locus "HERVH_11q14.1f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0878"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_11q14.1g ### chr11 rmsk gene 83419135 83423556 . + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0879"; model_cov "3596"; model_pct "46.6"; chr11 rmsk exon 83419135 83419545 2690 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 83419548 83422346 16801 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr11 rmsk exon 83422347 83422726 2601 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "-3978"; repStart "3357"; chr11 rmsk exon 83422731 83423064 2100 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "4308"; repFamily "ERV1"; repLeft "-3405"; repStart "3994"; chr11 rmsk exon 83423063 83423141 505 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7638"; chr11 rmsk exon 83423142 83423556 2385 + . gene_id "HERVH_11q14.1g"; transcript_id "HERVH_11q14.1g"; locus "HERVH_11q14.1g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0879"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_11q14.1h ### chr11 rmsk gene 83430603 83436575 . - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0880"; model_cov "4835"; model_pct "62.7"; chr11 rmsk exon 83430603 83431050 3057 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 83431051 83431421 2531 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 83431422 83431638 1380 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 83431640 83432343 4874 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4429"; repStart "-2564"; chr11 rmsk exon 83432615 83433942 8182 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "4437"; repFamily "ERV1"; repLeft "3140"; repStart "-3276"; chr11 rmsk exon 83433922 83436029 13839 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "894"; repStart "-4718"; chr11 rmsk exon 83436005 83436116 553 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "110"; repFamily "ERV1"; repLeft "1"; repStart "-7603"; chr11 rmsk exon 83436120 83436575 3072 - . gene_id "HERVH_11q14.1h"; transcript_id "HERVH_11q14.1h"; locus "HERVH_11q14.1h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0880"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### HERVH_11q14.1i ### chr11 rmsk gene 83442184 83448545 . - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0881"; model_cov "5758"; model_pct "74.7"; chr11 rmsk exon 83442184 83442537 1991 - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0881"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 83442538 83442914 2369 - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0881"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 83442913 83443128 1401 - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0881"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 83443130 83448183 23812 - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0881"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr11 rmsk exon 83448186 83448545 1980 - . gene_id "HERVH_11q14.1i"; transcript_id "HERVH_11q14.1i"; locus "HERVH_11q14.1i"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0881"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_11q14.1f ### chr11 rmsk gene 83503292 83508193 . - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0920"; model_cov "3528"; model_pct "62.4"; chr11 rmsk exon 83503292 83503347 298 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr11 rmsk exon 83503424 83503851 2836 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "1"; repStart "-25"; chr11 rmsk exon 83503852 83506171 16864 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3323"; repStart "0"; chr11 rmsk exon 83506184 83507362 8666 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "1198"; repFamily "ERVL"; repLeft "1"; repStart "-4456"; chr11 rmsk exon 83507367 83507425 265 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "378"; repStart "-8"; chr11 rmsk exon 83507808 83508193 2736 - . gene_id "HERVL_11q14.1f"; transcript_id "HERVL_11q14.1f"; locus "HERVL_11q14.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0920"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; ### HERVL40_11q14.1 ### chr11 rmsk gene 85155046 85156791 . + . gene_id "HERVL40_11q14.1"; transcript_id "HERVL40_11q14.1"; locus "HERVL40_11q14.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0298"; model_cov "562"; model_pct "10.2"; chr11 rmsk exon 85155046 85155422 1180 + . gene_id "HERVL40_11q14.1"; transcript_id "HERVL40_11q14.1"; locus "HERVL40_11q14.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0298"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "51"; chr11 rmsk exon 85155432 85155587 658 + . gene_id "HERVL40_11q14.1"; transcript_id "HERVL40_11q14.1"; locus "HERVL40_11q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0298"; repClass "LTR"; repEnd "172"; repFamily "ERVL"; repLeft "-5358"; repStart "17"; chr11 rmsk exon 85155877 85156013 658 + . gene_id "HERVL40_11q14.1"; transcript_id "HERVL40_11q14.1"; locus "HERVL40_11q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0298"; repClass "LTR"; repEnd "323"; repFamily "ERVL"; repLeft "-5207"; repStart "173"; chr11 rmsk exon 85156550 85156791 1065 + . gene_id "HERVL40_11q14.1"; transcript_id "HERVL40_11q14.1"; locus "HERVL40_11q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0298"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "-1981"; repStart "3292"; ### HERVL_11q14.1g ### chr11 rmsk gene 85156889 85163278 . + . gene_id "HERVL_11q14.1g"; transcript_id "HERVL_11q14.1g"; locus "HERVL_11q14.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0922"; model_cov "5628"; model_pct "99.5"; chr11 rmsk exon 85156889 85157293 2911 + . gene_id "HERVL_11q14.1g"; transcript_id "HERVL_11q14.1g"; locus "HERVL_11q14.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0922"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "-36"; repStart "1"; chr11 rmsk exon 85157294 85162819 38349 + . gene_id "HERVL_11q14.1g"; transcript_id "HERVL_11q14.1g"; locus "HERVL_11q14.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0922"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "26"; chr11 rmsk exon 85162820 85163206 2979 + . gene_id "HERVL_11q14.1g"; transcript_id "HERVL_11q14.1g"; locus "HERVL_11q14.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0922"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-39"; repStart "1"; chr11 rmsk exon 85163245 85163278 2979 + . gene_id "HERVL_11q14.1g"; transcript_id "HERVL_11q14.1g"; locus "HERVL_11q14.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0922"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "406"; ### MER61_11q14.1c ### chr11 rmsk gene 85368772 85373842 . + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0269"; model_cov "4602"; model_pct "88.2"; chr11 rmsk exon 85368772 85369012 1021 + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0269"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 85369013 85369703 3179 + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0269"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr11 rmsk exon 85369734 85371659 22050 + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0269"; repClass "LTR"; repEnd "3336"; repFamily "ERV1"; repLeft "-1881"; repStart "1320"; chr11 rmsk exon 85371713 85373507 22050 + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0269"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3337"; chr11 rmsk exon 85373508 85373842 1853 + . gene_id "MER61_11q14.1c"; transcript_id "MER61_11q14.1c"; locus "MER61_11q14.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0269"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_11q14.2a ### chr11 rmsk gene 85940994 85945741 . + . gene_id "HERVL18_11q14.2a"; transcript_id "HERVL18_11q14.2a"; locus "HERVL18_11q14.2a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0111"; model_cov "4395"; model_pct "72.7"; chr11 rmsk exon 85940994 85943742 19129 + . gene_id "HERVL18_11q14.2a"; transcript_id "HERVL18_11q14.2a"; locus "HERVL18_11q14.2a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0111"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2467"; repStart "838"; chr11 rmsk exon 85943744 85945408 10346 + . gene_id "HERVL18_11q14.2a"; transcript_id "HERVL18_11q14.2a"; locus "HERVL18_11q14.2a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0111"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4394"; chr11 rmsk exon 85945410 85945741 1377 + . gene_id "HERVL18_11q14.2a"; transcript_id "HERVL18_11q14.2a"; locus "HERVL18_11q14.2a"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0111"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_11q14.2a ### chr11 rmsk gene 86450540 86453375 . + . gene_id "ERVLE_11q14.2a"; transcript_id "ERVLE_11q14.2a"; locus "ERVLE_11q14.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2565"; model_cov "2449"; model_pct "43.2"; chr11 rmsk exon 86450540 86450626 330 + . gene_id "ERVLE_11q14.2a"; transcript_id "ERVLE_11q14.2a"; locus "ERVLE_11q14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2565"; repClass "LTR"; repEnd "3260"; repFamily "ERVL"; repLeft "-2407"; repStart "3180"; chr11 rmsk exon 86450784 86452983 6382 + . gene_id "ERVLE_11q14.2a"; transcript_id "ERVLE_11q14.2a"; locus "ERVLE_11q14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2565"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "-70"; repStart "3297"; chr11 rmsk exon 86453300 86453375 6382 + . gene_id "ERVLE_11q14.2a"; transcript_id "ERVLE_11q14.2a"; locus "ERVLE_11q14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2565"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5598"; ### HERVW_11q14.2 ### chr11 rmsk gene 86833496 86836818 . - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0218"; model_cov "2935"; model_pct "34.0"; chr11 rmsk exon 86833496 86833808 2592 - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0218"; repClass "LTR"; repEnd "322"; repFamily "ERV1"; repLeft "1"; repStart "-458"; chr11 rmsk exon 86833809 86834100 2518 - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0218"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr11 rmsk exon 86834091 86834129 306 - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0218"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr11 rmsk exon 86834123 86834506 22253 - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0218"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5635"; repStart "-2607"; chr11 rmsk exon 86834615 86836818 22253 - . gene_id "HERVW_11q14.2"; transcript_id "HERVW_11q14.2"; locus "HERVW_11q14.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0218"; repClass "LTR"; repEnd "5634"; repFamily "ERV1"; repLeft "3412"; repStart "-2992"; ### HERV30_11q14.2 ### chr11 rmsk gene 86845542 86851050 . + . gene_id "HERV30_11q14.2"; transcript_id "HERV30_11q14.2"; locus "HERV30_11q14.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0018"; model_cov "4200"; model_pct "50.9"; chr11 rmsk exon 86845542 86846235 4656 + . gene_id "HERV30_11q14.2"; transcript_id "HERV30_11q14.2"; locus "HERV30_11q14.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0018"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 86846236 86849842 28396 + . gene_id "HERV30_11q14.2"; transcript_id "HERV30_11q14.2"; locus "HERV30_11q14.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0018"; repClass "LTR"; repEnd "3608"; repFamily "ERV1"; repLeft "-4649"; repStart "1"; chr11 rmsk exon 86849837 86850418 4189 + . gene_id "HERV30_11q14.2"; transcript_id "HERV30_11q14.2"; locus "HERV30_11q14.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0018"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7664"; chr11 rmsk exon 86850419 86851050 4373 + . gene_id "HERV30_11q14.2"; transcript_id "HERV30_11q14.2"; locus "HERV30_11q14.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0018"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_11q14.2 ### chr11 rmsk gene 87086913 87088907 . - . gene_id "MER61_11q14.2"; transcript_id "MER61_11q14.2"; locus "MER61_11q14.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0270"; model_cov "1407"; model_pct "27.0"; chr11 rmsk exon 87086913 87087744 8957 - . gene_id "MER61_11q14.2"; transcript_id "MER61_11q14.2"; locus "MER61_11q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0270"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3456"; repStart "-1224"; chr11 rmsk exon 87088036 87088907 8957 - . gene_id "MER61_11q14.2"; transcript_id "MER61_11q14.2"; locus "MER61_11q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0270"; repClass "LTR"; repEnd "3455"; repFamily "ERV1"; repLeft "2585"; repStart "-1762"; ### HERVL18_11q14.2b ### chr11 rmsk gene 87359416 87362995 . + . gene_id "HERVL18_11q14.2b"; transcript_id "HERVL18_11q14.2b"; locus "HERVL18_11q14.2b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0112"; model_cov "3056"; model_pct "50.5"; chr11 rmsk exon 87359416 87359505 611 + . gene_id "HERVL18_11q14.2b"; transcript_id "HERVL18_11q14.2b"; locus "HERVL18_11q14.2b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0112"; repClass "LTR"; repEnd "90"; repFamily "ERVL"; repLeft "-267"; repStart "1"; chr11 rmsk exon 87359684 87359924 1540 + . gene_id "HERVL18_11q14.2b"; transcript_id "HERVL18_11q14.2b"; locus "HERVL18_11q14.2b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0112"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "95"; chr11 rmsk exon 87359939 87362995 19243 + . gene_id "HERVL18_11q14.2b"; transcript_id "HERVL18_11q14.2b"; locus "HERVL18_11q14.2b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0112"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "-2982"; repStart "9"; ### ERVLE_11q14.2b ### chr11 rmsk gene 87780143 87781003 . - . gene_id "ERVLE_11q14.2b"; transcript_id "ERVLE_11q14.2b"; locus "ERVLE_11q14.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2567"; model_cov "696"; model_pct "12.3"; chr11 rmsk exon 87780143 87780762 1241 - . gene_id "ERVLE_11q14.2b"; transcript_id "ERVLE_11q14.2b"; locus "ERVLE_11q14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2567"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "4642"; repStart "-391"; chr11 rmsk exon 87780941 87781003 264 - . gene_id "ERVLE_11q14.2b"; transcript_id "ERVLE_11q14.2b"; locus "ERVLE_11q14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2567"; repClass "LTR"; repEnd "4667"; repFamily "ERVL"; repLeft "4605"; repStart "-1000"; ### HERVH_11q14.2 ### chr11 rmsk gene 88043410 88049633 . + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0882"; model_cov "5611"; model_pct "72.7"; chr11 rmsk exon 88043410 88043800 2002 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 88043804 88046602 14920 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 88046582 88048636 12855 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3140"; chr11 rmsk exon 88048638 88048853 1346 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 88048854 88049218 2373 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr11 rmsk exon 88049219 88049633 2768 + . gene_id "HERVH_11q14.2"; transcript_id "HERVH_11q14.2"; locus "HERVH_11q14.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0882"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_11q14.2c ### chr11 rmsk gene 88111100 88111577 . - . gene_id "ERVLE_11q14.2c"; transcript_id "ERVLE_11q14.2c"; locus "ERVLE_11q14.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2568"; model_cov "669"; model_pct "11.8"; chr11 rmsk exon 88111100 88111577 962 - . gene_id "ERVLE_11q14.2c"; transcript_id "ERVLE_11q14.2c"; locus "ERVLE_11q14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2568"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "4534"; repStart "-464"; ### HERVL18_11q14.2c ### chr11 rmsk gene 88431622 88434850 . - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0113"; model_cov "2070"; model_pct "34.2"; chr11 rmsk exon 88431622 88432237 3394 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 88432418 88432954 3201 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "3490"; repFamily "ERVL"; repLeft "2952"; repStart "-2557"; chr11 rmsk exon 88432955 88433152 797 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2808"; repStart "-2963"; chr11 rmsk exon 88433166 88433202 266 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "2721"; repStart "-3290"; chr11 rmsk exon 88433204 88433428 620 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "2119"; repStart "-3596"; chr11 rmsk exon 88433428 88433786 967 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1388"; repStart "-4237"; chr11 rmsk exon 88433805 88433987 762 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "673"; repFamily "ERVL"; repLeft "492"; repStart "-5374"; chr11 rmsk exon 88433970 88434251 1120 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "19"; repStart "-5743"; chr11 rmsk exon 88434274 88434850 3061 - . gene_id "HERVL18_11q14.2c"; transcript_id "HERVL18_11q14.2c"; locus "HERVL18_11q14.2c"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0113"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_11q14.3a ### chr11 rmsk gene 88699400 88701594 . + . gene_id "ERV316A3_11q14.3a"; transcript_id "ERV316A3_11q14.3a"; locus "ERV316A3_11q14.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1974"; model_cov "1946"; model_pct "37.2"; chr11 rmsk exon 88699400 88699661 736 + . gene_id "ERV316A3_11q14.3a"; transcript_id "ERV316A3_11q14.3a"; locus "ERV316A3_11q14.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1974"; repClass "LTR"; repEnd "250"; repFamily "ERVL"; repLeft "-188"; repStart "1"; chr11 rmsk exon 88699664 88701594 3912 + . gene_id "ERV316A3_11q14.3a"; transcript_id "ERV316A3_11q14.3a"; locus "ERV316A3_11q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1974"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "3231"; ### HUERSP3B_11q14.3 ### chr11 rmsk gene 88885695 88894481 . + . gene_id "HUERSP3B_11q14.3"; transcript_id "HUERSP3B_11q14.3"; locus "HUERSP3B_11q14.3"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0095"; model_cov "8304"; model_pct "100.0"; chr11 rmsk exon 88885695 88886301 3925 + . gene_id "HUERSP3B_11q14.3"; transcript_id "HUERSP3B_11q14.3"; locus "HUERSP3B_11q14.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0095"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 88886307 88888991 6327 + . gene_id "HUERSP3B_11q14.3"; transcript_id "HUERSP3B_11q14.3"; locus "HUERSP3B_11q14.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0095"; repClass "LTR"; repEnd "2639"; repFamily "ERV1"; repLeft "-4779"; repStart "5"; chr11 rmsk exon 88889427 88893227 14615 + . gene_id "HUERSP3B_11q14.3"; transcript_id "HUERSP3B_11q14.3"; locus "HUERSP3B_11q14.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0095"; repClass "LTR"; repEnd "6946"; repFamily "ERV1"; repLeft "-472"; repStart "1276"; chr11 rmsk exon 88893872 88894481 4057 + . gene_id "HUERSP3B_11q14.3"; transcript_id "HUERSP3B_11q14.3"; locus "HUERSP3B_11q14.3"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0095"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q14.3 ### chr11 rmsk gene 89381304 89387559 . + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0884"; model_cov "5981"; model_pct "77.5"; chr11 rmsk exon 89381304 89381670 1912 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 89381673 89384408 13791 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 89384388 89384836 2802 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3140"; chr11 rmsk exon 89384831 89386231 7642 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4865"; chr11 rmsk exon 89386223 89386643 2233 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr11 rmsk exon 89386637 89387192 3852 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr11 rmsk exon 89387193 89387559 2188 + . gene_id "HERVH_11q14.3"; transcript_id "HERVH_11q14.3"; locus "HERVH_11q14.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0884"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_11q14.3a ### chr11 rmsk gene 90123780 90124878 . + . gene_id "ERVLE_11q14.3a"; transcript_id "ERVLE_11q14.3a"; locus "ERVLE_11q14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2570"; model_cov "636"; model_pct "11.2"; chr11 rmsk exon 90123780 90123868 259 + . gene_id "ERVLE_11q14.3a"; transcript_id "ERVLE_11q14.3a"; locus "ERVLE_11q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2570"; repClass "LTR"; repEnd "4553"; repFamily "ERVL"; repLeft "-1114"; repStart "4475"; chr11 rmsk exon 90124372 90124878 757 + . gene_id "ERVLE_11q14.3a"; transcript_id "ERVLE_11q14.3a"; locus "ERVLE_11q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2570"; repClass "LTR"; repEnd "5317"; repFamily "ERVL"; repLeft "-350"; repStart "4759"; ### ERVLE_11q14.3b ### chr11 rmsk gene 90412237 90412696 . + . gene_id "ERVLE_11q14.3b"; transcript_id "ERVLE_11q14.3b"; locus "ERVLE_11q14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2571"; model_cov "599"; model_pct "10.6"; chr11 rmsk exon 90412237 90412696 918 + . gene_id "ERVLE_11q14.3b"; transcript_id "ERVLE_11q14.3b"; locus "ERVLE_11q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2571"; repClass "LTR"; repEnd "3009"; repFamily "ERVL"; repLeft "-2658"; repStart "2410"; ### ERVLE_11q14.3c ### chr11 rmsk gene 90437498 90441294 . + . gene_id "ERVLE_11q14.3c"; transcript_id "ERVLE_11q14.3c"; locus "ERVLE_11q14.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2572"; model_cov "3063"; model_pct "54.0"; chr11 rmsk exon 90437498 90437739 401 + . gene_id "ERVLE_11q14.3c"; transcript_id "ERVLE_11q14.3c"; locus "ERVLE_11q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2572"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "-4060"; repStart "1363"; chr11 rmsk exon 90438675 90441294 2294 + . gene_id "ERVLE_11q14.3c"; transcript_id "ERVLE_11q14.3c"; locus "ERVLE_11q14.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2572"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-1059"; repStart "1789"; ### ERV316A3_11q14.3b ### chr11 rmsk gene 90486509 90487266 . - . gene_id "ERV316A3_11q14.3b"; transcript_id "ERV316A3_11q14.3b"; locus "ERV316A3_11q14.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1975"; model_cov "756"; model_pct "14.5"; chr11 rmsk exon 90486509 90487266 1660 - . gene_id "ERV316A3_11q14.3b"; transcript_id "ERV316A3_11q14.3b"; locus "ERV316A3_11q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1975"; repClass "LTR"; repEnd "2399"; repFamily "ERVL"; repLeft "1643"; repStart "-2827"; ### ERVLE_11q14.3d ### chr11 rmsk gene 90702582 90705170 . - . gene_id "ERVLE_11q14.3d"; transcript_id "ERVLE_11q14.3d"; locus "ERVLE_11q14.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2574"; model_cov "2171"; model_pct "38.3"; chr11 rmsk exon 90702582 90703109 1402 - . gene_id "ERVLE_11q14.3d"; transcript_id "ERVLE_11q14.3d"; locus "ERVLE_11q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2574"; repClass "LTR"; repEnd "5249"; repFamily "ERVL"; repLeft "4711"; repStart "-418"; chr11 rmsk exon 90703528 90705010 2330 - . gene_id "ERVLE_11q14.3d"; transcript_id "ERVLE_11q14.3d"; locus "ERVLE_11q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2574"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "2892"; repStart "-1283"; chr11 rmsk exon 90705024 90705170 329 - . gene_id "ERVLE_11q14.3d"; transcript_id "ERVLE_11q14.3d"; locus "ERVLE_11q14.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2574"; repClass "LTR"; repEnd "3574"; repFamily "ERVL"; repLeft "3433"; repStart "-2093"; ### ERV316A3_11q14.3c ### chr11 rmsk gene 90705166 90707164 . - . gene_id "ERV316A3_11q14.3c"; transcript_id "ERV316A3_11q14.3c"; locus "ERV316A3_11q14.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1976"; model_cov "1199"; model_pct "22.9"; chr11 rmsk exon 90705166 90705871 1128 - . gene_id "ERV316A3_11q14.3c"; transcript_id "ERV316A3_11q14.3c"; locus "ERV316A3_11q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1976"; repClass "LTR"; repEnd "1509"; repFamily "ERVL"; repLeft "763"; repStart "-3717"; chr11 rmsk exon 90706191 90706637 483 - . gene_id "ERV316A3_11q14.3c"; transcript_id "ERV316A3_11q14.3c"; locus "ERV316A3_11q14.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1976"; repClass "LTR"; repEnd "623"; repFamily "ERVL"; repLeft "170"; repStart "-4603"; chr11 rmsk exon 90706770 90707054 971 - . gene_id "ERV316A3_11q14.3c"; transcript_id "ERV316A3_11q14.3c"; locus "ERV316A3_11q14.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1976"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "173"; repStart "0"; chr11 rmsk exon 90707078 90707164 248 - . gene_id "ERV316A3_11q14.3c"; transcript_id "ERV316A3_11q14.3c"; locus "ERV316A3_11q14.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1976"; repClass "LTR"; repEnd "93"; repFamily "ERVL"; repLeft "2"; repStart "-345"; ### ERV316A3_11q14.3d ### chr11 rmsk gene 90833165 90835136 . + . gene_id "ERV316A3_11q14.3d"; transcript_id "ERV316A3_11q14.3d"; locus "ERV316A3_11q14.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1977"; model_cov "1451"; model_pct "27.8"; chr11 rmsk exon 90833165 90833360 347 + . gene_id "ERV316A3_11q14.3d"; transcript_id "ERV316A3_11q14.3d"; locus "ERV316A3_11q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1977"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-4829"; repStart "200"; chr11 rmsk exon 90833370 90833529 1058 + . gene_id "ERV316A3_11q14.3d"; transcript_id "ERV316A3_11q14.3d"; locus "ERV316A3_11q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1977"; repClass "LTR"; repEnd "2177"; repFamily "ERVL"; repLeft "-3049"; repStart "2022"; chr11 rmsk exon 90833995 90834471 1058 + . gene_id "ERV316A3_11q14.3d"; transcript_id "ERV316A3_11q14.3d"; locus "ERV316A3_11q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1977"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "-2579"; repStart "2178"; chr11 rmsk exon 90834520 90835136 1177 + . gene_id "ERV316A3_11q14.3d"; transcript_id "ERV316A3_11q14.3d"; locus "ERV316A3_11q14.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1977"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "-1900"; repStart "2696"; ### ERVLB4_11q14.3a ### chr11 rmsk gene 90900181 90902333 . - . gene_id "ERVLB4_11q14.3a"; transcript_id "ERVLB4_11q14.3a"; locus "ERVLB4_11q14.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1206"; model_cov "1858"; model_pct "32.5"; chr11 rmsk exon 90900181 90901346 6023 - . gene_id "ERVLB4_11q14.3a"; transcript_id "ERVLB4_11q14.3a"; locus "ERVLB4_11q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1206"; repClass "LTR"; repEnd "3161"; repFamily "ERVL"; repLeft "1977"; repStart "-2553"; chr11 rmsk exon 90901353 90901989 2785 - . gene_id "ERVLB4_11q14.3a"; transcript_id "ERVLB4_11q14.3a"; locus "ERVLB4_11q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1206"; repClass "LTR"; repEnd "679"; repFamily "ERVL"; repLeft "44"; repStart "-5035"; chr11 rmsk exon 90902281 90902333 2785 - . gene_id "ERVLB4_11q14.3a"; transcript_id "ERVLB4_11q14.3a"; locus "ERVLB4_11q14.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1206"; repClass "LTR"; repEnd "43"; repFamily "ERVL"; repLeft "4"; repStart "-5671"; ### HUERSP2_11q14.3 ### chr11 rmsk gene 90928569 90931530 . + . gene_id "HUERSP2_11q14.3"; transcript_id "HUERSP2_11q14.3"; locus "HUERSP2_11q14.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0087"; model_cov "3013"; model_pct "97.6"; chr11 rmsk exon 90928569 90928798 1333 + . gene_id "HUERSP2_11q14.3"; transcript_id "HUERSP2_11q14.3"; locus "HUERSP2_11q14.3"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0087"; repClass "LTR"; repEnd "975"; repFamily "ERV1"; repLeft "0"; repStart "744"; chr11 rmsk exon 90928914 90930600 5568 + . gene_id "HUERSP2_11q14.3"; transcript_id "HUERSP2_11q14.3"; locus "HUERSP2_11q14.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0087"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "75"; chr11 rmsk exon 90930601 90931530 5514 + . gene_id "HUERSP2_11q14.3"; transcript_id "HUERSP2_11q14.3"; locus "HUERSP2_11q14.3"; repName "LTR1D"; geneRegion "ltr"; locid "HUERS-P2-int_0087"; repClass "LTR"; repEnd "971"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### HERVL_11q14.3a ### chr11 rmsk gene 91596669 91603352 . + . gene_id "HERVL_11q14.3a"; transcript_id "HERVL_11q14.3a"; locus "HERVL_11q14.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0924"; model_cov "5652"; model_pct "100.0"; chr11 rmsk exon 91596669 91597117 3288 + . gene_id "HERVL_11q14.3a"; transcript_id "HERVL_11q14.3a"; locus "HERVL_11q14.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0924"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr11 rmsk exon 91597120 91602751 41883 + . gene_id "HERVL_11q14.3a"; transcript_id "HERVL_11q14.3a"; locus "HERVL_11q14.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0924"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr11 rmsk exon 91602752 91602901 1091 + . gene_id "HERVL_11q14.3a"; transcript_id "HERVL_11q14.3a"; locus "HERVL_11q14.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0924"; repClass "LTR"; repEnd "150"; repFamily "ERVL"; repLeft "-303"; repStart "1"; chr11 rmsk exon 91602903 91603352 3340 + . gene_id "HERVL_11q14.3a"; transcript_id "HERVL_11q14.3a"; locus "HERVL_11q14.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0924"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_11q14.3e ### chr11 rmsk gene 91743810 91745065 . - . gene_id "ERVLE_11q14.3e"; transcript_id "ERVLE_11q14.3e"; locus "ERVLE_11q14.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2577"; model_cov "1132"; model_pct "20.0"; chr11 rmsk exon 91743810 91744024 628 - . gene_id "ERVLE_11q14.3e"; transcript_id "ERVLE_11q14.3e"; locus "ERVLE_11q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2577"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4552"; repStart "-888"; chr11 rmsk exon 91744170 91745065 1574 - . gene_id "ERVLE_11q14.3e"; transcript_id "ERVLE_11q14.3e"; locus "ERVLE_11q14.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2577"; repClass "LTR"; repEnd "4343"; repFamily "ERVL"; repLeft "3438"; repStart "-1324"; ### ERVLE_11q14.3f ### chr11 rmsk gene 91934813 91935533 . + . gene_id "ERVLE_11q14.3f"; transcript_id "ERVLE_11q14.3f"; locus "ERVLE_11q14.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2578"; model_cov "584"; model_pct "10.3"; chr11 rmsk exon 91934813 91935171 585 + . gene_id "ERVLE_11q14.3f"; transcript_id "ERVLE_11q14.3f"; locus "ERVLE_11q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2578"; repClass "LTR"; repEnd "1587"; repFamily "ERVL"; repLeft "-4080"; repStart "1220"; chr11 rmsk exon 91935312 91935533 449 + . gene_id "ERVLE_11q14.3f"; transcript_id "ERVLE_11q14.3f"; locus "ERVLE_11q14.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2578"; repClass "LTR"; repEnd "2661"; repFamily "ERVL"; repLeft "-3006"; repStart "2444"; ### ERVLB4_11q14.3b ### chr11 rmsk gene 92037106 92037806 . - . gene_id "ERVLB4_11q14.3b"; transcript_id "ERVLB4_11q14.3b"; locus "ERVLB4_11q14.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1207"; model_cov "727"; model_pct "12.7"; chr11 rmsk exon 92037106 92037806 1299 - . gene_id "ERVLB4_11q14.3b"; transcript_id "ERVLB4_11q14.3b"; locus "ERVLB4_11q14.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1207"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "2879"; repStart "-2108"; ### ERV316A3_11q14.3e ### chr11 rmsk gene 92133536 92134748 . - . gene_id "ERV316A3_11q14.3e"; transcript_id "ERV316A3_11q14.3e"; locus "ERV316A3_11q14.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1980"; model_cov "1175"; model_pct "22.5"; chr11 rmsk exon 92133536 92134528 1836 - . gene_id "ERV316A3_11q14.3e"; transcript_id "ERV316A3_11q14.3e"; locus "ERV316A3_11q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1980"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4236"; repStart "-1"; chr11 rmsk exon 92134558 92134748 449 - . gene_id "ERV316A3_11q14.3e"; transcript_id "ERV316A3_11q14.3e"; locus "ERV316A3_11q14.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1980"; repClass "LTR"; repEnd "3739"; repFamily "ERVL"; repLeft "3553"; repStart "-1487"; ### HERVK11D_11q14.3 ### chr11 rmsk gene 92943569 92950131 . - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0018"; model_cov "4976"; model_pct "64.2"; chr11 rmsk exon 92943569 92944465 7958 - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0018"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 92944466 92946645 10526 - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0018"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "5368"; repStart "0"; chr11 rmsk exon 92946636 92948376 15092 - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0018"; repClass "LTR"; repEnd "4804"; repFamily "ERVK"; repLeft "3073"; repStart "-2948"; chr11 rmsk exon 92948377 92949234 6877 - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0018"; repClass "LTR"; repEnd "862"; repFamily "ERVK"; repLeft "1"; repStart "-6890"; chr11 rmsk exon 92949235 92950131 7792 - . gene_id "HERVK11D_11q14.3"; transcript_id "HERVK11D_11q14.3"; locus "HERVK11D_11q14.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0018"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_11q14.3b ### chr11 rmsk gene 92986258 92987642 . - . gene_id "HERVL_11q14.3b"; transcript_id "HERVL_11q14.3b"; locus "HERVL_11q14.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0925"; model_cov "869"; model_pct "15.4"; chr11 rmsk exon 92986258 92987134 7188 - . gene_id "HERVL_11q14.3b"; transcript_id "HERVL_11q14.3b"; locus "HERVL_11q14.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0925"; repClass "LTR"; repEnd "870"; repFamily "ERVL"; repLeft "1"; repStart "-4784"; chr11 rmsk exon 92987135 92987189 3228 - . gene_id "HERVL_11q14.3b"; transcript_id "HERVL_11q14.3b"; locus "HERVL_11q14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0925"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "382"; repStart "0"; chr11 rmsk exon 92987231 92987642 3228 - . gene_id "HERVL_11q14.3b"; transcript_id "HERVL_11q14.3b"; locus "HERVL_11q14.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0925"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "2"; repStart "-63"; ### HARLEQUIN_11q21 ### chr11 rmsk gene 93103524 93110857 . - . gene_id "HARLEQUIN_11q21"; transcript_id "HARLEQUIN_11q21"; locus "HARLEQUIN_11q21"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0134"; model_cov "6513"; model_pct "94.4"; chr11 rmsk exon 93103524 93103986 3767 - . gene_id "HARLEQUIN_11q21"; transcript_id "HARLEQUIN_11q21"; locus "HARLEQUIN_11q21"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0134"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 93103987 93108893 37735 - . gene_id "HARLEQUIN_11q21"; transcript_id "HARLEQUIN_11q21"; locus "HARLEQUIN_11q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0134"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1966"; repStart "0"; chr11 rmsk exon 93108888 93110419 7590 - . gene_id "HARLEQUIN_11q21"; transcript_id "HARLEQUIN_11q21"; locus "HARLEQUIN_11q21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0134"; repClass "LTR"; repEnd "1584"; repFamily "ERV1"; repLeft "1"; repStart "-5312"; chr11 rmsk exon 93110420 93110857 3360 - . gene_id "HARLEQUIN_11q21"; transcript_id "HARLEQUIN_11q21"; locus "HARLEQUIN_11q21"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0134"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11q21a ### chr11 rmsk gene 93251476 93252134 . + . gene_id "ERVLE_11q21a"; transcript_id "ERVLE_11q21a"; locus "ERVLE_11q21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2579"; model_cov "825"; model_pct "14.6"; chr11 rmsk exon 93251476 93252134 882 + . gene_id "ERVLE_11q21a"; transcript_id "ERVLE_11q21a"; locus "ERVLE_11q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2579"; repClass "LTR"; repEnd "4983"; repFamily "ERVL"; repLeft "-684"; repStart "4158"; ### HERVIP10F_11q21 ### chr11 rmsk gene 93260775 93269148 . + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0076"; model_cov "6585"; model_pct "85.1"; chr11 rmsk exon 93260775 93260893 715 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "382"; chr11 rmsk exon 93260895 93261578 1898 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "-7098"; repStart "1"; chr11 rmsk exon 93261584 93262281 2371 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "2090"; repFamily "ERV1"; repLeft "-5647"; repStart "1302"; chr11 rmsk exon 93262586 93263362 3563 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "-4510"; repStart "2404"; chr11 rmsk exon 93263342 93264550 6249 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "-3216"; repStart "3317"; chr11 rmsk exon 93265535 93268631 14808 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "4603"; chr11 rmsk exon 93268671 93269148 2727 + . gene_id "HERVIP10F_11q21"; transcript_id "HERVIP10F_11q21"; locus "HERVIP10F_11q21"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0076"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "-103"; repStart "1"; ### HERVIP10FH_11q21 ### chr11 rmsk gene 93264538 93265564 . + . gene_id "HERVIP10FH_11q21"; transcript_id "HERVIP10FH_11q21"; locus "HERVIP10FH_11q21"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0117"; model_cov "1013"; model_pct "19.9"; chr11 rmsk exon 93264538 93265564 6347 + . gene_id "HERVIP10FH_11q21"; transcript_id "HERVIP10FH_11q21"; locus "HERVIP10FH_11q21"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0117"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "-2805"; repStart "1284"; ### ERVLB4_11q21a ### chr11 rmsk gene 93291720 93292795 . + . gene_id "ERVLB4_11q21a"; transcript_id "ERVLB4_11q21a"; locus "ERVLB4_11q21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1208"; model_cov "654"; model_pct "11.4"; chr11 rmsk exon 93291720 93291764 2815 + . gene_id "ERVLB4_11q21a"; transcript_id "ERVLB4_11q21a"; locus "ERVLB4_11q21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1208"; repClass "LTR"; repEnd "4794"; repFamily "ERVL"; repLeft "-920"; repStart "4756"; chr11 rmsk exon 93292214 93292795 2815 + . gene_id "ERVLB4_11q21a"; transcript_id "ERVLB4_11q21a"; locus "ERVLB4_11q21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1208"; repClass "LTR"; repEnd "5411"; repFamily "ERVL"; repLeft "-303"; repStart "4795"; ### ERV316A3_11q21a ### chr11 rmsk gene 93433662 93436650 . - . gene_id "ERV316A3_11q21a"; transcript_id "ERV316A3_11q21a"; locus "ERV316A3_11q21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1981"; model_cov "1929"; model_pct "36.9"; chr11 rmsk exon 93433662 93434106 1383 - . gene_id "ERV316A3_11q21a"; transcript_id "ERV316A3_11q21a"; locus "ERV316A3_11q21a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1981"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "14"; repStart "-2"; chr11 rmsk exon 93434114 93435372 3645 - . gene_id "ERV316A3_11q21a"; transcript_id "ERV316A3_11q21a"; locus "ERV316A3_11q21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1981"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3942"; repStart "0"; chr11 rmsk exon 93436068 93436650 1147 - . gene_id "ERV316A3_11q21a"; transcript_id "ERV316A3_11q21a"; locus "ERV316A3_11q21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1981"; repClass "LTR"; repEnd "3176"; repFamily "ERVL"; repLeft "2531"; repStart "-2050"; ### ERVLB4_11q21b ### chr11 rmsk gene 93606121 93609488 . - . gene_id "ERVLB4_11q21b"; transcript_id "ERVLB4_11q21b"; locus "ERVLB4_11q21b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1209"; model_cov "3187"; model_pct "55.8"; chr11 rmsk exon 93606121 93606381 1049 - . gene_id "ERVLB4_11q21b"; transcript_id "ERVLB4_11q21b"; locus "ERVLB4_11q21b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1209"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "57"; repStart "-191"; chr11 rmsk exon 93606388 93609488 19399 - . gene_id "ERVLB4_11q21b"; transcript_id "ERVLB4_11q21b"; locus "ERVLB4_11q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1209"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "2520"; repStart "-7"; ### MER4_11q21f ### chr11 rmsk gene 93853038 93857260 . - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; category "largegap*"; intModel "MER4-int"; locid "MER4-int_0550"; model_cov "3533"; model_pct "53.5"; chr11 rmsk exon 93853038 93853504 3435 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0550"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr11 rmsk exon 93853514 93853764 1562 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0550"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6344"; repStart "-2"; chr11 rmsk exon 93853761 93855252 10768 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0550"; repClass "LTR"; repEnd "5671"; repFamily "ERV1"; repLeft "4134"; repStart "-927"; chr11 rmsk exon 93855530 93855839 10768 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0550"; repClass "LTR"; repEnd "4133"; repFamily "ERV1"; repLeft "3836"; repStart "-2465"; chr11 rmsk exon 93855838 93856001 660 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0550"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3513"; repStart "-2917"; chr11 rmsk exon 93856153 93856792 2731 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0550"; repClass "LTR"; repEnd "807"; repFamily "ERV1"; repLeft "1"; repStart "-5791"; chr11 rmsk exon 93856796 93857260 3557 - . gene_id "MER4_11q21f"; transcript_id "MER4_11q21f"; locus "MER4_11q21f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0550"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### MER4_11q21a ### chr11 rmsk gene 93858762 93861195 . + . gene_id "MER4_11q21a"; transcript_id "MER4_11q21a"; locus "MER4_11q21a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0551"; model_cov "1242"; model_pct "18.8"; chr11 rmsk exon 93858762 93858923 1275 + . gene_id "MER4_11q21a"; transcript_id "MER4_11q21a"; locus "MER4_11q21a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0551"; repClass "LTR"; repEnd "164"; repFamily "ERV1"; repLeft "-308"; repStart "1"; chr11 rmsk exon 93859555 93860732 6656 + . gene_id "MER4_11q21a"; transcript_id "MER4_11q21a"; locus "MER4_11q21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0551"; repClass "LTR"; repEnd "2387"; repFamily "ERV1"; repLeft "-4211"; repStart "1145"; chr11 rmsk exon 93860765 93861195 3071 + . gene_id "MER4_11q21a"; transcript_id "MER4_11q21a"; locus "MER4_11q21a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0551"; repClass "LTR"; repEnd "455"; repFamily "ERV1"; repLeft "-17"; repStart "1"; ### HERVH48_11q21 ### chr11 rmsk gene 93861745 93870225 . - . gene_id "HERVH48_11q21"; transcript_id "HERVH48_11q21"; locus "HERVH48_11q21"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0039"; model_cov "6682"; model_pct "100.0"; chr11 rmsk exon 93861745 93862125 2540 - . gene_id "HERVH48_11q21"; transcript_id "HERVH48_11q21"; locus "HERVH48_11q21"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0039"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr11 rmsk exon 93862127 93863029 5504 - . gene_id "HERVH48_11q21"; transcript_id "HERVH48_11q21"; locus "HERVH48_11q21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0039"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "5794"; repStart "0"; chr11 rmsk exon 93864083 93869836 38880 - . gene_id "HERVH48_11q21"; transcript_id "HERVH48_11q21"; locus "HERVH48_11q21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0039"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "1"; repStart "-831"; chr11 rmsk exon 93869837 93870225 2676 - . gene_id "HERVH48_11q21"; transcript_id "HERVH48_11q21"; locus "HERVH48_11q21"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0039"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_11q21b ### chr11 rmsk gene 93871926 93875851 . - . gene_id "MER4_11q21b"; transcript_id "MER4_11q21b"; locus "MER4_11q21b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0552"; model_cov "4019"; model_pct "60.9"; chr11 rmsk exon 93871926 93872371 3054 - . gene_id "MER4_11q21b"; transcript_id "MER4_11q21b"; locus "MER4_11q21b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0552"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 93872377 93874785 15651 - . gene_id "MER4_11q21b"; transcript_id "MER4_11q21b"; locus "MER4_11q21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0552"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "4072"; repStart "-1"; chr11 rmsk exon 93875089 93875851 15651 - . gene_id "MER4_11q21b"; transcript_id "MER4_11q21b"; locus "MER4_11q21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0552"; repClass "LTR"; repEnd "4071"; repFamily "ERV1"; repLeft "2577"; repStart "-2527"; ### MER4_11q21c ### chr11 rmsk gene 93876095 93879237 . - . gene_id "MER4_11q21c"; transcript_id "MER4_11q21c"; locus "MER4_11q21c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0553"; model_cov "3000"; model_pct "45.5"; chr11 rmsk exon 93876095 93877036 15651 - . gene_id "MER4_11q21c"; transcript_id "MER4_11q21c"; locus "MER4_11q21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0553"; repClass "LTR"; repEnd "4071"; repFamily "ERV1"; repLeft "2220"; repStart "-2527"; chr11 rmsk exon 93877338 93877692 9707 - . gene_id "MER4_11q21c"; transcript_id "MER4_11q21c"; locus "MER4_11q21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0553"; repClass "LTR"; repEnd "2307"; repFamily "ERV1"; repLeft "2266"; repStart "-4291"; chr11 rmsk exon 93877738 93878765 4796 - . gene_id "MER4_11q21c"; transcript_id "MER4_11q21c"; locus "MER4_11q21c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0553"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "3"; repStart "-5487"; chr11 rmsk exon 93878771 93879237 3189 - . gene_id "MER4_11q21c"; transcript_id "MER4_11q21c"; locus "MER4_11q21c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0553"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_11q21 ### chr11 rmsk gene 94118244 94125844 . + . gene_id "HERV9_11q21"; transcript_id "HERV9_11q21"; locus "HERV9_11q21"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0133"; model_cov "6676"; model_pct "79.1"; chr11 rmsk exon 94118244 94118736 3428 + . gene_id "HERV9_11q21"; transcript_id "HERV9_11q21"; locus "HERV9_11q21"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0133"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "-234"; repStart "1"; chr11 rmsk exon 94118738 94123646 33157 + . gene_id "HERV9_11q21"; transcript_id "HERV9_11q21"; locus "HERV9_11q21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0133"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-3407"; repStart "1"; chr11 rmsk exon 94123639 94125285 13924 + . gene_id "HERV9_11q21"; transcript_id "HERV9_11q21"; locus "HERV9_11q21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0133"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6788"; chr11 rmsk exon 94125286 94125844 4043 + . gene_id "HERV9_11q21"; transcript_id "HERV9_11q21"; locus "HERV9_11q21"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0133"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "-226"; repStart "1"; ### HERVH_11q21e ### chr11 rmsk gene 94345725 94355534 . + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_0885"; model_cov "4908"; model_pct "63.6"; chr11 rmsk exon 94345725 94346118 2763 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr11 rmsk exon 94346126 94349120 20161 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr11 rmsk exon 94349120 94349262 897 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 94349262 94349753 3346 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 94349756 94350418 4416 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 94350420 94350637 1419 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 94350637 94351011 2298 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 94351012 94351415 2737 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 94351418 94353033 11131 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1377"; chr11 rmsk exon 94353033 94353879 6293 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr11 rmsk exon 94353882 94354544 4497 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 94354546 94354761 1395 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 94354761 94355138 2471 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 94355139 94355534 2758 + . gene_id "HERVH_11q21e"; transcript_id "HERVH_11q21e"; locus "HERVH_11q21e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0885"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_11q21a ### chr11 rmsk gene 94641601 94647311 . + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0887"; model_cov "4857"; model_pct "63.0"; chr11 rmsk exon 94641601 94642009 3071 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 94642012 94645008 20422 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr11 rmsk exon 94645003 94645150 935 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 94645141 94645643 3442 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 94645646 94646308 4411 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 94646310 94646526 1430 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 94646527 94646848 2035 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "7664"; repFamily "ERV1"; repLeft "-49"; repStart "7324"; chr11 rmsk exon 94646903 94647311 3140 + . gene_id "HERVH_11q21a"; transcript_id "HERVH_11q21a"; locus "HERVH_11q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0887"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV4_11q21 ### chr11 rmsk gene 94650011 94657535 . + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0095"; model_cov "6538"; model_pct "100.0"; chr11 rmsk exon 94650011 94650210 455 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "162"; repFamily "ERV1"; repLeft "-215"; repStart "1"; chr11 rmsk exon 94650208 94650507 1713 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "0"; repStart "68"; chr11 rmsk exon 94650510 94657040 45941 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 94657041 94657173 492 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "138"; repFamily "ERV1"; repLeft "-239"; repStart "1"; chr11 rmsk exon 94657186 94657240 327 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "162"; repFamily "ERV1"; repLeft "-215"; repStart "109"; chr11 rmsk exon 94657233 94657535 1686 + . gene_id "HERV4_11q21"; transcript_id "HERV4_11q21"; locus "HERV4_11q21"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0095"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "0"; repStart "63"; ### MER4_11q21d ### chr11 rmsk gene 94809643 94812759 . - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0554"; model_cov "2382"; model_pct "36.1"; chr11 rmsk exon 94809643 94810831 9329 - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0554"; repClass "LTR"; repEnd "2396"; repFamily "ERV1"; repLeft "1191"; repStart "-4202"; chr11 rmsk exon 94810870 94811232 9329 - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0554"; repClass "LTR"; repEnd "1190"; repFamily "ERV1"; repLeft "838"; repStart "-5408"; chr11 rmsk exon 94811510 94812197 9329 - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0554"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "12"; repStart "-5761"; chr11 rmsk exon 94812210 94812613 2430 - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0554"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "115"; repStart "0"; chr11 rmsk exon 94812646 94812759 2430 - . gene_id "MER4_11q21d"; transcript_id "MER4_11q21d"; locus "MER4_11q21d"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0554"; repClass "LTR"; repEnd "114"; repFamily "ERV1"; repLeft "2"; repStart "-486"; ### MER4_11q21e ### chr11 rmsk gene 94815022 94819826 . + . gene_id "MER4_11q21e"; transcript_id "MER4_11q21e"; locus "MER4_11q21e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0555"; model_cov "5597"; model_pct "84.8"; chr11 rmsk exon 94815022 94815043 18760 + . gene_id "MER4_11q21e"; transcript_id "MER4_11q21e"; locus "MER4_11q21e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0555"; repClass "LTR"; repEnd "1014"; repFamily "ERV1"; repLeft "-5584"; repStart "982"; chr11 rmsk exon 94815586 94819189 18760 + . gene_id "MER4_11q21e"; transcript_id "MER4_11q21e"; locus "MER4_11q21e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0555"; repClass "LTR"; repEnd "6580"; repFamily "ERV1"; repLeft "-18"; repStart "1015"; chr11 rmsk exon 94819190 94819826 3815 + . gene_id "MER4_11q21e"; transcript_id "MER4_11q21e"; locus "MER4_11q21e"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0555"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_11q21 ### chr11 rmsk gene 94815044 94815585 . + . gene_id "LTR57_11q21"; transcript_id "LTR57_11q21"; locus "LTR57_11q21"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0125"; model_cov "583"; model_pct "10.9"; chr11 rmsk exon 94815044 94815585 1632 + . gene_id "LTR57_11q21"; transcript_id "LTR57_11q21"; locus "LTR57_11q21"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0125"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "-3768"; repStart "992"; ### MER34B_11q21 ### chr11 rmsk gene 95003912 95005348 . - . gene_id "MER34B_11q21"; transcript_id "MER34B_11q21"; locus "MER34B_11q21"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0203"; model_cov "1441"; model_pct "26.9"; chr11 rmsk exon 95003912 95004973 2619 - . gene_id "MER34B_11q21"; transcript_id "MER34B_11q21"; locus "MER34B_11q21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0203"; repClass "LTR"; repEnd "3497"; repFamily "ERV1"; repLeft "2095"; repStart "-1859"; chr11 rmsk exon 95005264 95005348 2619 - . gene_id "MER34B_11q21"; transcript_id "MER34B_11q21"; locus "MER34B_11q21"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0203"; repClass "LTR"; repEnd "2425"; repFamily "ERV1"; repLeft "2386"; repStart "-2931"; ### HERVH_11q21b ### chr11 rmsk gene 95019384 95025062 . - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0888"; model_cov "4716"; model_pct "61.1"; chr11 rmsk exon 95019384 95019811 3548 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr11 rmsk exon 95019814 95020202 2569 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 95020203 95022833 16460 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "3140"; repStart "-1894"; chr11 rmsk exon 95022813 95023617 5319 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "2205"; repStart "-4718"; chr11 rmsk exon 95023621 95024075 2474 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "1256"; repFamily "ERV1"; repLeft "801"; repStart "-6457"; chr11 rmsk exon 95024187 95024586 2511 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "415"; repFamily "ERV1"; repLeft "12"; repStart "-7298"; chr11 rmsk exon 95024599 95025062 3939 - . gene_id "HERVH_11q21b"; transcript_id "HERVH_11q21b"; locus "HERVH_11q21b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0888"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11q21b ### chr11 rmsk gene 95072790 95073368 . - . gene_id "ERVLE_11q21b"; transcript_id "ERVLE_11q21b"; locus "ERVLE_11q21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2583"; model_cov "571"; model_pct "10.1"; chr11 rmsk exon 95072790 95073368 1240 - . gene_id "ERVLE_11q21b"; transcript_id "ERVLE_11q21b"; locus "ERVLE_11q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2583"; repClass "LTR"; repEnd "3744"; repFamily "ERVL"; repLeft "3173"; repStart "-1923"; ### HERVH_11q21c ### chr11 rmsk gene 95309419 95317803 . + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0889"; model_cov "7358"; model_pct "95.4"; chr11 rmsk exon 95309419 95309890 4271 + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0889"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 95309891 95312927 20215 + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0889"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr11 rmsk exon 95312913 95313060 886 + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0889"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 95313051 95317325 29865 + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0889"; repClass "LTR"; repEnd "7706"; repFamily "ERV1"; repLeft "-7"; repStart "3492"; chr11 rmsk exon 95317333 95317803 4174 + . gene_id "HERVH_11q21c"; transcript_id "HERVH_11q21c"; locus "HERVH_11q21c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0889"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q21b ### chr11 rmsk gene 95385835 95386679 . - . gene_id "ERV316A3_11q21b"; transcript_id "ERV316A3_11q21b"; locus "ERV316A3_11q21b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1982"; model_cov "566"; model_pct "10.8"; chr11 rmsk exon 95385835 95386258 1488 - . gene_id "ERV316A3_11q21b"; transcript_id "ERV316A3_11q21b"; locus "ERV316A3_11q21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1982"; repClass "LTR"; repEnd "4585"; repFamily "ERVL"; repLeft "4019"; repStart "-641"; chr11 rmsk exon 95386277 95386446 729 - . gene_id "ERV316A3_11q21b"; transcript_id "ERV316A3_11q21b"; locus "ERV316A3_11q21b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1982"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "288"; repStart "-4"; chr11 rmsk exon 95386481 95386679 256 - . gene_id "ERV316A3_11q21b"; transcript_id "ERV316A3_11q21b"; locus "ERV316A3_11q21b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1982"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "13"; repStart "-269"; ### ERV316A3_11q21c ### chr11 rmsk gene 95542977 95547367 . - . gene_id "ERV316A3_11q21c"; transcript_id "ERV316A3_11q21c"; locus "ERV316A3_11q21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1983"; model_cov "4307"; model_pct "82.4"; chr11 rmsk exon 95542977 95547277 11495 - . gene_id "ERV316A3_11q21c"; transcript_id "ERV316A3_11q21c"; locus "ERV316A3_11q21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1983"; repClass "LTR"; repEnd "4314"; repFamily "ERVL"; repLeft "7"; repStart "-912"; chr11 rmsk exon 95547279 95547367 314 - . gene_id "ERV316A3_11q21c"; transcript_id "ERV316A3_11q21c"; locus "ERV316A3_11q21c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1983"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "374"; repStart "0"; ### MER41_11q21 ### chr11 rmsk gene 95613458 95614534 . - . gene_id "MER41_11q21"; transcript_id "MER41_11q21"; locus "MER41_11q21"; category "internal"; intModel "MER41-int"; locid "MER41-int_0375"; model_cov "1228"; model_pct "20.7"; chr11 rmsk exon 95613458 95613811 1606 - . gene_id "MER41_11q21"; transcript_id "MER41_11q21"; locus "MER41_11q21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0375"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "399"; repStart "-5166"; chr11 rmsk exon 95613808 95614534 3309 - . gene_id "MER41_11q21"; transcript_id "MER41_11q21"; locus "MER41_11q21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0375"; repClass "LTR"; repEnd "1135"; repFamily "ERV1"; repLeft "288"; repStart "-4811"; ### HML5_11q21 ### chr11 rmsk gene 95933550 95940248 . + . gene_id "HML5_11q21"; transcript_id "HML5_11q21"; locus "HML5_11q21"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0081"; model_cov "5921"; model_pct "86.6"; chr11 rmsk exon 95933550 95934029 3252 + . gene_id "HML5_11q21"; transcript_id "HML5_11q21"; locus "HML5_11q21"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0081"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 95934030 95938646 45476 + . gene_id "HML5_11q21"; transcript_id "HML5_11q21"; locus "HML5_11q21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0081"; repClass "LTR"; repEnd "4644"; repFamily "ERVK"; repLeft "-2193"; repStart "1"; chr11 rmsk exon 95938958 95940248 45476 + . gene_id "HML5_11q21"; transcript_id "HML5_11q21"; locus "HML5_11q21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0081"; repClass "LTR"; repEnd "5923"; repFamily "ERVK"; repLeft "-914"; repStart "4645"; ### ERVLE_11q21c ### chr11 rmsk gene 95943046 95947278 . - . gene_id "ERVLE_11q21c"; transcript_id "ERVLE_11q21c"; locus "ERVLE_11q21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2584"; model_cov "1801"; model_pct "31.8"; chr11 rmsk exon 95943046 95943609 778 - . gene_id "ERVLE_11q21c"; transcript_id "ERVLE_11q21c"; locus "ERVLE_11q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2584"; repClass "LTR"; repEnd "5616"; repFamily "ERVL"; repLeft "5049"; repStart "-51"; chr11 rmsk exon 95946013 95946494 1876 - . gene_id "ERVLE_11q21c"; transcript_id "ERVLE_11q21c"; locus "ERVLE_11q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2584"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "4546"; repStart "-623"; chr11 rmsk exon 95946528 95947278 2245 - . gene_id "ERVLE_11q21c"; transcript_id "ERVLE_11q21c"; locus "ERVLE_11q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2584"; repClass "LTR"; repEnd "4456"; repFamily "ERVL"; repLeft "3720"; repStart "-1211"; ### LTR46_11q21 ### chr11 rmsk gene 96498781 96507527 . + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0016"; model_cov "8371"; model_pct "100.0"; chr11 rmsk exon 96498781 96499220 2823 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 96499221 96499760 3199 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "-6443"; repStart "1"; chr11 rmsk exon 96500352 96506568 39856 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "6536"; repFamily "ERV1"; repLeft "-449"; repStart "-983"; chr11 rmsk exon 96506661 96506968 1920 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "0"; repStart "6674"; chr11 rmsk exon 96506969 96506999 1920 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "34"; repFamily "ERV1"; repLeft "-426"; repStart "1"; chr11 rmsk exon 96507025 96507527 1920 + . gene_id "LTR46_11q21"; transcript_id "LTR46_11q21"; locus "LTR46_11q21"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0016"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-1"; repStart "35"; ### HERVH_11q21d ### chr11 rmsk gene 96587635 96593674 . + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0890"; model_cov "5061"; model_pct "65.6"; chr11 rmsk exon 96587635 96588085 3319 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 96588088 96591471 19161 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr11 rmsk exon 96591462 96591966 3295 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 96591969 96592628 4298 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 96592630 96592845 1448 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 96592844 96593223 2495 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 96593224 96593674 3385 + . gene_id "HERVH_11q21d"; transcript_id "HERVH_11q21d"; locus "HERVH_11q21d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0890"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_11q21d ### chr11 rmsk gene 96615896 96618213 . - . gene_id "ERVLE_11q21d"; transcript_id "ERVLE_11q21d"; locus "ERVLE_11q21d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2585"; model_cov "1876"; model_pct "33.1"; chr11 rmsk exon 96615896 96616126 502 - . gene_id "ERVLE_11q21d"; transcript_id "ERVLE_11q21d"; locus "ERVLE_11q21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2585"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "4986"; repStart "-448"; chr11 rmsk exon 96616145 96616398 827 - . gene_id "ERVLE_11q21d"; transcript_id "ERVLE_11q21d"; locus "ERVLE_11q21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2585"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "3293"; repStart "-2091"; chr11 rmsk exon 96616899 96617666 934 - . gene_id "ERVLE_11q21d"; transcript_id "ERVLE_11q21d"; locus "ERVLE_11q21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2585"; repClass "LTR"; repEnd "2574"; repFamily "ERVL"; repLeft "1692"; repStart "-3093"; chr11 rmsk exon 96617730 96618213 797 - . gene_id "ERVLE_11q21d"; transcript_id "ERVLE_11q21d"; locus "ERVLE_11q21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2585"; repClass "LTR"; repEnd "1622"; repFamily "ERVL"; repLeft "1144"; repStart "-4045"; ### PRIMA4_11q21 ### chr11 rmsk gene 96629756 96632028 . - . gene_id "PRIMA4_11q21"; transcript_id "PRIMA4_11q21"; locus "PRIMA4_11q21"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0150"; model_cov "1103"; model_pct "13.3"; chr11 rmsk exon 96629756 96629979 329 - . gene_id "PRIMA4_11q21"; transcript_id "PRIMA4_11q21"; locus "PRIMA4_11q21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0150"; repClass "LTR"; repEnd "5707"; repFamily "ERV1"; repLeft "5483"; repStart "-2563"; chr11 rmsk exon 96630527 96630643 329 - . gene_id "PRIMA4_11q21"; transcript_id "PRIMA4_11q21"; locus "PRIMA4_11q21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0150"; repClass "LTR"; repEnd "4861"; repFamily "ERV1"; repLeft "4743"; repStart "-3409"; chr11 rmsk exon 96631028 96631161 306 - . gene_id "PRIMA4_11q21"; transcript_id "PRIMA4_11q21"; locus "PRIMA4_11q21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0150"; repClass "LTR"; repEnd "4532"; repFamily "ERV1"; repLeft "4394"; repStart "-3738"; chr11 rmsk exon 96631429 96632028 436 - . gene_id "PRIMA4_11q21"; transcript_id "PRIMA4_11q21"; locus "PRIMA4_11q21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0150"; repClass "LTR"; repEnd "3924"; repFamily "ERV1"; repLeft "3301"; repStart "-4346"; ### ERVLB4_11q21c ### chr11 rmsk gene 96697533 96700987 . - . gene_id "ERVLB4_11q21c"; transcript_id "ERVLB4_11q21c"; locus "ERVLB4_11q21c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1211"; model_cov "3047"; model_pct "53.3"; chr11 rmsk exon 96697533 96698398 2188 - . gene_id "ERVLB4_11q21c"; transcript_id "ERVLB4_11q21c"; locus "ERVLB4_11q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1211"; repClass "LTR"; repEnd "4532"; repFamily "ERVL"; repLeft "3659"; repStart "-1182"; chr11 rmsk exon 96698403 96700293 4068 - . gene_id "ERVLB4_11q21c"; transcript_id "ERVLB4_11q21c"; locus "ERVLB4_11q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1211"; repClass "LTR"; repEnd "2836"; repFamily "ERVL"; repLeft "892"; repStart "-2878"; chr11 rmsk exon 96700756 96700987 252 - . gene_id "ERVLB4_11q21c"; transcript_id "ERVLB4_11q21c"; locus "ERVLB4_11q21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1211"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "51"; repStart "-5433"; ### ERV316A3_11q21d ### chr11 rmsk gene 96870233 96871968 . + . gene_id "ERV316A3_11q21d"; transcript_id "ERV316A3_11q21d"; locus "ERV316A3_11q21d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1985"; model_cov "1041"; model_pct "19.9"; chr11 rmsk exon 96870233 96871245 1695 + . gene_id "ERV316A3_11q21d"; transcript_id "ERV316A3_11q21d"; locus "ERV316A3_11q21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1985"; repClass "LTR"; repEnd "4616"; repFamily "ERVL"; repLeft "-610"; repStart "3575"; chr11 rmsk exon 96871586 96871968 724 + . gene_id "ERV316A3_11q21d"; transcript_id "ERV316A3_11q21d"; locus "ERV316A3_11q21d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1985"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "2"; ### ERVLB4_11q21d ### chr11 rmsk gene 96987260 96994711 . + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1212"; model_cov "5289"; model_pct "92.6"; chr11 rmsk exon 96987260 96987353 331 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "178"; repFamily "ERVL"; repLeft "-219"; repStart "79"; chr11 rmsk exon 96987618 96987974 1038 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "-52"; repStart "1"; chr11 rmsk exon 96988031 96989477 3974 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "-4253"; repStart "49"; chr11 rmsk exon 96989469 96989568 368 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "-3689"; repStart "1934"; chr11 rmsk exon 96990014 96991707 14242 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "3808"; repFamily "ERVL"; repLeft "-1906"; repStart "2029"; chr11 rmsk exon 96992020 96993452 14242 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "5232"; repFamily "ERVL"; repLeft "-482"; repStart "3809"; chr11 rmsk exon 96993827 96994261 1137 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "5123"; chr11 rmsk exon 96994267 96994625 1457 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-40"; repStart "-161"; chr11 rmsk exon 96994679 96994711 226 + . gene_id "ERVLB4_11q21d"; transcript_id "ERVLB4_11q21d"; locus "ERVLB4_11q21d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1212"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "366"; ### ERVLE_11q21e ### chr11 rmsk gene 97004699 97007304 . - . gene_id "ERVLE_11q21e"; transcript_id "ERVLE_11q21e"; locus "ERVLE_11q21e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2586"; model_cov "1388"; model_pct "24.5"; chr11 rmsk exon 97004699 97005604 1397 - . gene_id "ERVLE_11q21e"; transcript_id "ERVLE_11q21e"; locus "ERVLE_11q21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2586"; repClass "LTR"; repEnd "2718"; repFamily "ERVL"; repLeft "1790"; repStart "-2949"; chr11 rmsk exon 97006060 97006339 595 - . gene_id "ERVLE_11q21e"; transcript_id "ERVLE_11q21e"; locus "ERVLE_11q21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2586"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "687"; repStart "-4678"; chr11 rmsk exon 97007147 97007304 367 - . gene_id "ERVLE_11q21e"; transcript_id "ERVLE_11q21e"; locus "ERVLE_11q21e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2586"; repClass "LTR"; repEnd "501"; repFamily "ERVL"; repLeft "343"; repStart "-5166"; ### ERV316A3_11q21e ### chr11 rmsk gene 97208468 97209757 . - . gene_id "ERV316A3_11q21e"; transcript_id "ERV316A3_11q21e"; locus "ERV316A3_11q21e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1986"; model_cov "531"; model_pct "10.2"; chr11 rmsk exon 97208468 97208834 551 - . gene_id "ERV316A3_11q21e"; transcript_id "ERV316A3_11q21e"; locus "ERV316A3_11q21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1986"; repClass "LTR"; repEnd "847"; repFamily "ERVL"; repLeft "478"; repStart "-4379"; chr11 rmsk exon 97209014 97209173 489 - . gene_id "ERV316A3_11q21e"; transcript_id "ERV316A3_11q21e"; locus "ERV316A3_11q21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1986"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "232"; repStart "-4832"; chr11 rmsk exon 97209353 97209757 1373 - . gene_id "ERV316A3_11q21e"; transcript_id "ERV316A3_11q21e"; locus "ERV316A3_11q21e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1986"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "1"; repStart "-7"; ### ERVLE_11q21f ### chr11 rmsk gene 97236883 97239036 . + . gene_id "ERVLE_11q21f"; transcript_id "ERVLE_11q21f"; locus "ERVLE_11q21f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2587"; model_cov "880"; model_pct "15.5"; chr11 rmsk exon 97236883 97237156 283 + . gene_id "ERVLE_11q21f"; transcript_id "ERVLE_11q21f"; locus "ERVLE_11q21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2587"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "-5269"; repStart "124"; chr11 rmsk exon 97237378 97237655 333 + . gene_id "ERVLE_11q21f"; transcript_id "ERVLE_11q21f"; locus "ERVLE_11q21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2587"; repClass "LTR"; repEnd "930"; repFamily "ERVL"; repLeft "-4737"; repStart "641"; chr11 rmsk exon 97238733 97239036 619 + . gene_id "ERVLE_11q21f"; transcript_id "ERVLE_11q21f"; locus "ERVLE_11q21f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2587"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "-3335"; repStart "2015"; ### ERVLB4_11q21e ### chr11 rmsk gene 97250064 97252894 . + . gene_id "ERVLB4_11q21e"; transcript_id "ERVLB4_11q21e"; locus "ERVLB4_11q21e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1213"; model_cov "2756"; model_pct "48.2"; chr11 rmsk exon 97250064 97250475 2537 + . gene_id "ERVLB4_11q21e"; transcript_id "ERVLB4_11q21e"; locus "ERVLB4_11q21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1213"; repClass "LTR"; repEnd "2386"; repFamily "ERVL"; repLeft "-3328"; repStart "2018"; chr11 rmsk exon 97250652 97252311 2537 + . gene_id "ERVLB4_11q21e"; transcript_id "ERVLB4_11q21e"; locus "ERVLB4_11q21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1213"; repClass "LTR"; repEnd "4072"; repFamily "ERVL"; repLeft "-1642"; repStart "2387"; chr11 rmsk exon 97252322 97252894 682 + . gene_id "ERVLB4_11q21e"; transcript_id "ERVLB4_11q21e"; locus "ERVLB4_11q21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1213"; repClass "LTR"; repEnd "5111"; repFamily "ERVL"; repLeft "-603"; repStart "4408"; ### ERVLB4_11q21f ### chr11 rmsk gene 97306948 97308761 . - . gene_id "ERVLB4_11q21f"; transcript_id "ERVLB4_11q21f"; locus "ERVLB4_11q21f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1214"; model_cov "1849"; model_pct "32.4"; chr11 rmsk exon 97306948 97308275 1379 - . gene_id "ERVLB4_11q21f"; transcript_id "ERVLB4_11q21f"; locus "ERVLB4_11q21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1214"; repClass "LTR"; repEnd "4768"; repFamily "ERVL"; repLeft "3348"; repStart "-946"; chr11 rmsk exon 97308344 97308761 696 - . gene_id "ERVLB4_11q21f"; transcript_id "ERVLB4_11q21f"; locus "ERVLB4_11q21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1214"; repClass "LTR"; repEnd "2209"; repFamily "ERVL"; repLeft "1780"; repStart "-3505"; ### ERVLB4_11q21g ### chr11 rmsk gene 97308927 97309569 . - . gene_id "ERVLB4_11q21g"; transcript_id "ERVLB4_11q21g"; locus "ERVLB4_11q21g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1215"; model_cov "655"; model_pct "11.5"; chr11 rmsk exon 97308927 97309569 531 - . gene_id "ERVLB4_11q21g"; transcript_id "ERVLB4_11q21g"; locus "ERVLB4_11q21g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1215"; repClass "LTR"; repEnd "2229"; repFamily "ERVL"; repLeft "1574"; repStart "-3485"; ### HERVL_11q21 ### chr11 rmsk gene 97317542 97323414 . + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0926"; model_cov "4972"; model_pct "87.9"; chr11 rmsk exon 97317542 97317987 2765 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 97317988 97318425 3310 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-5209"; repStart "1"; chr11 rmsk exon 97318427 97319607 8800 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "2130"; repFamily "ERVL"; repLeft "-3524"; repStart "927"; chr11 rmsk exon 97319603 97322925 24996 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2329"; chr11 rmsk exon 97322926 97323323 2708 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr11 rmsk exon 97323336 97323414 295 + . gene_id "HERVL_11q21"; transcript_id "HERVL_11q21"; locus "HERVL_11q21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0926"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "366"; ### ERVLE_11q21g ### chr11 rmsk gene 97386801 97392341 . - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2588"; model_cov "1937"; model_pct "34.2"; chr11 rmsk exon 97386801 97386881 282 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "5041"; repFamily "ERVL"; repLeft "4955"; repStart "-626"; chr11 rmsk exon 97387235 97387483 282 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "4688"; repStart "-713"; chr11 rmsk exon 97387583 97388151 1156 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "4535"; repFamily "ERVL"; repLeft "3954"; repStart "-1132"; chr11 rmsk exon 97388260 97388594 874 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "3218"; repStart "-2102"; chr11 rmsk exon 97389298 97389634 748 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "3221"; repFamily "ERVL"; repLeft "2874"; repStart "-2446"; chr11 rmsk exon 97392043 97392341 385 - . gene_id "ERVLE_11q21g"; transcript_id "ERVLE_11q21g"; locus "ERVLE_11q21g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2588"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "1302"; repStart "-4055"; ### MER4B_11q22.1 ### chr11 rmsk gene 97518547 97522407 . - . gene_id "MER4B_11q22.1"; transcript_id "MER4B_11q22.1"; locus "MER4B_11q22.1"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0318"; model_cov "1621"; model_pct "24.0"; chr11 rmsk exon 97518547 97518651 255 - . gene_id "MER4B_11q22.1"; transcript_id "MER4B_11q22.1"; locus "MER4B_11q22.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0318"; repClass "LTR"; repEnd "1471"; repFamily "ERV1"; repLeft "1368"; repStart "-5287"; chr11 rmsk exon 97520101 97520283 380 - . gene_id "MER4B_11q22.1"; transcript_id "MER4B_11q22.1"; locus "MER4B_11q22.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0318"; repClass "LTR"; repEnd "818"; repFamily "ERV1"; repLeft "636"; repStart "-5940"; chr11 rmsk exon 97520429 97521640 4457 - . gene_id "MER4B_11q22.1"; transcript_id "MER4B_11q22.1"; locus "MER4B_11q22.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0318"; repClass "LTR"; repEnd "532"; repFamily "ERV1"; repLeft "-804"; repStart "-6226"; chr11 rmsk exon 97521652 97522407 5249 - . gene_id "MER4B_11q22.1"; transcript_id "MER4B_11q22.1"; locus "MER4B_11q22.1"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0318"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP2_11q22.1a ### chr11 rmsk gene 97608739 97611776 . - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0088"; model_cov "1430"; model_pct "46.3"; chr11 rmsk exon 97608739 97609526 4233 - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0088"; repClass "LTR"; repEnd "798"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr11 rmsk exon 97609529 97609848 2101 - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0088"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "2762"; repStart "-1"; chr11 rmsk exon 97609849 97610812 5538 - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0088"; repClass "LTR"; repEnd "1187"; repFamily "ERV1"; repLeft "212"; repStart "-1901"; chr11 rmsk exon 97610827 97610961 510 - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0088"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "5"; repStart "-2953"; chr11 rmsk exon 97610965 97611776 4378 - . gene_id "HUERSP2_11q22.1a"; transcript_id "HUERSP2_11q22.1a"; locus "HUERSP2_11q22.1a"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0088"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_11q22.1a ### chr11 rmsk gene 97626666 97627460 . + . gene_id "ERVLE_11q22.1a"; transcript_id "ERVLE_11q22.1a"; locus "ERVLE_11q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2589"; model_cov "902"; model_pct "15.9"; chr11 rmsk exon 97626666 97627460 2493 + . gene_id "ERVLE_11q22.1a"; transcript_id "ERVLE_11q22.1a"; locus "ERVLE_11q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2589"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "-1758"; repStart "3007"; ### HERVL40_11q22.1 ### chr11 rmsk gene 97774433 97775759 . + . gene_id "HERVL40_11q22.1"; transcript_id "HERVL40_11q22.1"; locus "HERVL40_11q22.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0300"; model_cov "696"; model_pct "12.6"; chr11 rmsk exon 97774433 97774843 929 + . gene_id "HERVL40_11q22.1"; transcript_id "HERVL40_11q22.1"; locus "HERVL40_11q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0300"; repClass "LTR"; repEnd "3585"; repFamily "ERVL"; repLeft "-1945"; repStart "3280"; chr11 rmsk exon 97775380 97775759 1200 + . gene_id "HERVL40_11q22.1"; transcript_id "HERVL40_11q22.1"; locus "HERVL40_11q22.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0300"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-1154"; repStart "3985"; ### HERVL_11q22.1 ### chr11 rmsk gene 97788606 97790771 . - . gene_id "HERVL_11q22.1"; transcript_id "HERVL_11q22.1"; locus "HERVL_11q22.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0928"; model_cov "1443"; model_pct "25.5"; chr11 rmsk exon 97788606 97789053 3166 - . gene_id "HERVL_11q22.1"; transcript_id "HERVL_11q22.1"; locus "HERVL_11q22.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0928"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr11 rmsk exon 97789056 97789172 709 - . gene_id "HERVL_11q22.1"; transcript_id "HERVL_11q22.1"; locus "HERVL_11q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0928"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5537"; repStart "0"; chr11 rmsk exon 97789170 97790272 9539 - . gene_id "HERVL_11q22.1"; transcript_id "HERVL_11q22.1"; locus "HERVL_11q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0928"; repClass "LTR"; repEnd "2276"; repFamily "ERVL"; repLeft "1171"; repStart "-3378"; chr11 rmsk exon 97790577 97790771 9539 - . gene_id "HERVL_11q22.1"; transcript_id "HERVL_11q22.1"; locus "HERVL_11q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0928"; repClass "LTR"; repEnd "1170"; repFamily "ERVL"; repLeft "949"; repStart "-4484"; ### ERVLE_11q22.1b ### chr11 rmsk gene 97882221 97883751 . - . gene_id "ERVLE_11q22.1b"; transcript_id "ERVLE_11q22.1b"; locus "ERVLE_11q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2592"; model_cov "729"; model_pct "12.9"; chr11 rmsk exon 97882221 97882422 1390 - . gene_id "ERVLE_11q22.1b"; transcript_id "ERVLE_11q22.1b"; locus "ERVLE_11q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2592"; repClass "LTR"; repEnd "5582"; repFamily "ERVL"; repLeft "5373"; repStart "-85"; chr11 rmsk exon 97882837 97882965 1390 - . gene_id "ERVLE_11q22.1b"; transcript_id "ERVLE_11q22.1b"; locus "ERVLE_11q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2592"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "5227"; repStart "-295"; chr11 rmsk exon 97883019 97883175 1390 - . gene_id "ERVLE_11q22.1b"; transcript_id "ERVLE_11q22.1b"; locus "ERVLE_11q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2592"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5081"; repStart "-441"; chr11 rmsk exon 97883531 97883751 1390 - . gene_id "ERVLE_11q22.1b"; transcript_id "ERVLE_11q22.1b"; locus "ERVLE_11q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2592"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "4850"; repStart "-587"; ### HERV9_11q22.1a ### chr11 rmsk gene 97964135 97965160 . - . gene_id "HERV9_11q22.1a"; transcript_id "HERV9_11q22.1a"; locus "HERV9_11q22.1a"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0134"; model_cov "1082"; model_pct "12.8"; chr11 rmsk exon 97964135 97965160 1519 - . gene_id "HERV9_11q22.1a"; transcript_id "HERV9_11q22.1a"; locus "HERV9_11q22.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0134"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "7353"; repStart "-1"; ### HUERSP3_11q22.1 ### chr11 rmsk gene 97965942 97973210 . - . gene_id "HUERSP3_11q22.1"; transcript_id "HUERSP3_11q22.1"; locus "HUERSP3_11q22.1"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0144"; model_cov "6261"; model_pct "70.2"; chr11 rmsk exon 97965942 97968669 14537 - . gene_id "HUERSP3_11q22.1"; transcript_id "HUERSP3_11q22.1"; locus "HUERSP3_11q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0144"; repClass "LTR"; repEnd "6528"; repFamily "ERV1"; repLeft "4009"; repStart "-2391"; chr11 rmsk exon 97968666 97972036 16511 - . gene_id "HUERSP3_11q22.1"; transcript_id "HUERSP3_11q22.1"; locus "HUERSP3_11q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0144"; repClass "LTR"; repEnd "3788"; repFamily "ERV1"; repLeft "599"; repStart "-5131"; chr11 rmsk exon 97972664 97973210 2300 - . gene_id "HUERSP3_11q22.1"; transcript_id "HUERSP3_11q22.1"; locus "HUERSP3_11q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0144"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "36"; repStart "-8330"; ### ERV316A3_11q22.1a ### chr11 rmsk gene 98043589 98045094 . - . gene_id "ERV316A3_11q22.1a"; transcript_id "ERV316A3_11q22.1a"; locus "ERV316A3_11q22.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1988"; model_cov "881"; model_pct "16.9"; chr11 rmsk exon 98043589 98043865 1700 - . gene_id "ERV316A3_11q22.1a"; transcript_id "ERV316A3_11q22.1a"; locus "ERV316A3_11q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1988"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "2441"; repStart "-2520"; chr11 rmsk exon 98044419 98044810 1700 - . gene_id "ERV316A3_11q22.1a"; transcript_id "ERV316A3_11q22.1a"; locus "ERV316A3_11q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1988"; repClass "LTR"; repEnd "2440"; repFamily "ERVL"; repLeft "2027"; repStart "-2786"; chr11 rmsk exon 98044897 98045094 410 - . gene_id "ERV316A3_11q22.1a"; transcript_id "ERV316A3_11q22.1a"; locus "ERV316A3_11q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1988"; repClass "LTR"; repEnd "1941"; repFamily "ERVL"; repLeft "1738"; repStart "-3285"; ### ERV316A3_11q22.1b ### chr11 rmsk gene 98045719 98048420 . - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1990"; model_cov "1723"; model_pct "33.0"; chr11 rmsk exon 98045719 98046170 887 - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1990"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 98046171 98047112 1681 - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1990"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4267"; repStart "0"; chr11 rmsk exon 98047224 98047495 941 - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1990"; repClass "LTR"; repEnd "3929"; repFamily "ERVL"; repLeft "3640"; repStart "-1297"; chr11 rmsk exon 98047519 98048000 553 - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1990"; repClass "LTR"; repEnd "484"; repFamily "ERVL"; repLeft "9"; repStart "-4742"; chr11 rmsk exon 98048008 98048420 839 - . gene_id "ERV316A3_11q22.1b"; transcript_id "ERV316A3_11q22.1b"; locus "ERV316A3_11q22.1b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1990"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "45"; repStart "0"; ### MER61_11q22.1a ### chr11 rmsk gene 98064677 98070173 . - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0271"; model_cov "3980"; model_pct "76.3"; chr11 rmsk exon 98064677 98065187 22866 - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0271"; repClass "LTR"; repEnd "4807"; repFamily "ERV1"; repLeft "4275"; repStart "-410"; chr11 rmsk exon 98066199 98069044 22866 - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0271"; repClass "LTR"; repEnd "4274"; repFamily "ERV1"; repLeft "1391"; repStart "-943"; chr11 rmsk exon 98069025 98069206 1554 - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0271"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "395"; repStart "-4650"; chr11 rmsk exon 98069502 98069849 1554 - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0271"; repClass "LTR"; repEnd "394"; repFamily "ERV1"; repLeft "1"; repStart "-4823"; chr11 rmsk exon 98069850 98070173 1455 - . gene_id "MER61_11q22.1a"; transcript_id "MER61_11q22.1a"; locus "MER61_11q22.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0271"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP2_11q22.1b ### chr11 rmsk gene 98383429 98384106 . + . gene_id "HUERSP2_11q22.1b"; transcript_id "HUERSP2_11q22.1b"; locus "HUERSP2_11q22.1b"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0089"; model_cov "903"; model_pct "29.2"; chr11 rmsk exon 98383429 98384106 3594 + . gene_id "HUERSP2_11q22.1b"; transcript_id "HUERSP2_11q22.1b"; locus "HUERSP2_11q22.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0089"; repClass "LTR"; repEnd "-1950"; repFamily "ERV1"; repLeft "-5038"; repStart "-2853"; ### HERVIP10F_11q22.1 ### chr11 rmsk gene 98394353 98395791 . - . gene_id "HERVIP10F_11q22.1"; transcript_id "HERVIP10F_11q22.1"; locus "HERVIP10F_11q22.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0077"; model_cov "920"; model_pct "11.9"; chr11 rmsk exon 98394353 98394879 3145 - . gene_id "HERVIP10F_11q22.1"; transcript_id "HERVIP10F_11q22.1"; locus "HERVIP10F_11q22.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0077"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 98394883 98395791 6944 - . gene_id "HERVIP10F_11q22.1"; transcript_id "HERVIP10F_11q22.1"; locus "HERVIP10F_11q22.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0077"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "6813"; repStart "-4"; ### HARLEQUIN_11q22.1a ### chr11 rmsk gene 98396259 98397522 . - . gene_id "HARLEQUIN_11q22.1a"; transcript_id "HARLEQUIN_11q22.1a"; locus "HARLEQUIN_11q22.1a"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0135"; model_cov "1264"; model_pct "18.3"; chr11 rmsk exon 98396259 98397522 10048 - . gene_id "HARLEQUIN_11q22.1a"; transcript_id "HARLEQUIN_11q22.1a"; locus "HARLEQUIN_11q22.1a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0135"; repClass "LTR"; repEnd "3796"; repFamily "ERV1"; repLeft "2532"; repStart "-3100"; ### HUERSP2_11q22.1c ### chr11 rmsk gene 98453083 98457221 . - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0090"; model_cov "2571"; model_pct "83.3"; chr11 rmsk exon 98453083 98453847 3904 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "102"; repStart "0"; chr11 rmsk exon 98453816 98453869 323 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "94"; repFamily "ERV1"; repLeft "41"; repStart "-743"; chr11 rmsk exon 98453871 98455296 9195 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "3084"; repFamily "ERV1"; repLeft "1615"; repStart "-4"; chr11 rmsk exon 98455295 98456263 4975 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "243"; repStart "-1862"; chr11 rmsk exon 98456269 98456382 349 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "1"; repStart "-2968"; chr11 rmsk exon 98456385 98457199 5180 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "834"; repFamily "ERV1"; repLeft "7"; repStart "-3"; chr11 rmsk exon 98457168 98457221 250 - . gene_id "HUERSP2_11q22.1c"; transcript_id "HUERSP2_11q22.1c"; locus "HUERSP2_11q22.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0090"; repClass "LTR"; repEnd "94"; repFamily "ERV1"; repLeft "41"; repStart "-743"; ### MER61_11q22.1b ### chr11 rmsk gene 98758549 98765618 . + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0272"; model_cov "4667"; model_pct "89.5"; chr11 rmsk exon 98758549 98758874 1510 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0272"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 98758875 98759593 3114 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0272"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr11 rmsk exon 98759587 98761479 23164 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0272"; repClass "LTR"; repEnd "3323"; repFamily "ERV1"; repLeft "-1894"; repStart "1320"; chr11 rmsk exon 98761562 98761892 23164 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0272"; repClass "LTR"; repEnd "3675"; repFamily "ERV1"; repLeft "-1542"; repStart "3324"; chr11 rmsk exon 98762197 98762382 23164 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0272"; repClass "LTR"; repEnd "3859"; repFamily "ERV1"; repLeft "-1358"; repStart "3676"; chr11 rmsk exon 98763975 98765283 23164 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0272"; repClass "LTR"; repEnd "5214"; repFamily "ERV1"; repLeft "-3"; repStart "3860"; chr11 rmsk exon 98765287 98765618 1828 + . gene_id "MER61_11q22.1b"; transcript_id "MER61_11q22.1b"; locus "MER61_11q22.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0272"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q22.1c ### chr11 rmsk gene 98825839 98827747 . + . gene_id "ERV316A3_11q22.1c"; transcript_id "ERV316A3_11q22.1c"; locus "ERV316A3_11q22.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1993"; model_cov "1549"; model_pct "29.6"; chr11 rmsk exon 98825839 98826309 406 + . gene_id "ERV316A3_11q22.1c"; transcript_id "ERV316A3_11q22.1c"; locus "ERV316A3_11q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1993"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "-2970"; repStart "1770"; chr11 rmsk exon 98826700 98827747 1386 + . gene_id "ERV316A3_11q22.1c"; transcript_id "ERV316A3_11q22.1c"; locus "ERV316A3_11q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1993"; repClass "LTR"; repEnd "3832"; repFamily "ERVL"; repLeft "-1394"; repStart "2769"; ### ERVLB4_11q22.1a ### chr11 rmsk gene 98876229 98882025 . - . gene_id "ERVLB4_11q22.1a"; transcript_id "ERVLB4_11q22.1a"; locus "ERVLB4_11q22.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1216"; model_cov "2976"; model_pct "52.1"; chr11 rmsk exon 98876229 98876710 1668 - . gene_id "ERVLB4_11q22.1a"; transcript_id "ERVLB4_11q22.1a"; locus "ERVLB4_11q22.1a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1216"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "1"; repStart "-71"; chr11 rmsk exon 98877091 98877348 1359 - . gene_id "ERVLB4_11q22.1a"; transcript_id "ERVLB4_11q22.1a"; locus "ERVLB4_11q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1216"; repClass "LTR"; repEnd "3358"; repFamily "ERVL"; repLeft "3090"; repStart "-2356"; chr11 rmsk exon 98878402 98878770 1666 - . gene_id "ERVLB4_11q22.1a"; transcript_id "ERVLB4_11q22.1a"; locus "ERVLB4_11q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1216"; repClass "LTR"; repEnd "3094"; repFamily "ERVL"; repLeft "2758"; repStart "-2620"; chr11 rmsk exon 98879752 98882025 10764 - . gene_id "ERVLB4_11q22.1a"; transcript_id "ERVLB4_11q22.1a"; locus "ERVLB4_11q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1216"; repClass "LTR"; repEnd "2617"; repFamily "ERVL"; repLeft "245"; repStart "-3097"; ### HML5_11q22.1 ### chr11 rmsk gene 98928947 98933825 . - . gene_id "HML5_11q22.1"; transcript_id "HML5_11q22.1"; locus "HML5_11q22.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0082"; model_cov "3706"; model_pct "54.2"; chr11 rmsk exon 98928947 98929461 3024 - . gene_id "HML5_11q22.1"; transcript_id "HML5_11q22.1"; locus "HML5_11q22.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0082"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 98929463 98932612 21640 - . gene_id "HML5_11q22.1"; transcript_id "HML5_11q22.1"; locus "HML5_11q22.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0082"; repClass "LTR"; repEnd "5333"; repFamily "ERVK"; repLeft "2314"; repStart "-1504"; chr11 rmsk exon 98932668 98933344 4781 - . gene_id "HML5_11q22.1"; transcript_id "HML5_11q22.1"; locus "HML5_11q22.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0082"; repClass "LTR"; repEnd "688"; repFamily "ERVK"; repLeft "1"; repStart "-6149"; chr11 rmsk exon 98933346 98933825 3178 - . gene_id "HML5_11q22.1"; transcript_id "HML5_11q22.1"; locus "HML5_11q22.1"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0082"; repClass "LTR"; repEnd "501"; repFamily "ERVK"; repLeft "1"; repStart "-1"; ### HERVL66_11q22.1 ### chr11 rmsk gene 99180055 99182182 . - . gene_id "HERVL66_11q22.1"; transcript_id "HERVL66_11q22.1"; locus "HERVL66_11q22.1"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0018"; model_cov "1601"; model_pct "37.0"; chr11 rmsk exon 99180055 99180685 4043 - . gene_id "HERVL66_11q22.1"; transcript_id "HERVL66_11q22.1"; locus "HERVL66_11q22.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0018"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 99180687 99181361 3767 - . gene_id "HERVL66_11q22.1"; transcript_id "HERVL66_11q22.1"; locus "HERVL66_11q22.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0018"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "3569"; repStart "-1"; chr11 rmsk exon 99181363 99182058 4713 - . gene_id "HERVL66_11q22.1"; transcript_id "HERVL66_11q22.1"; locus "HERVL66_11q22.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0018"; repClass "LTR"; repEnd "3349"; repFamily "ERVL"; repLeft "2654"; repStart "-980"; chr11 rmsk exon 99182039 99182182 954 - . gene_id "HERVL66_11q22.1"; transcript_id "HERVL66_11q22.1"; locus "HERVL66_11q22.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0018"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1650"; repStart "-2532"; ### MER41_11q22.1a ### chr11 rmsk gene 99296637 99297521 . - . gene_id "MER41_11q22.1a"; transcript_id "MER41_11q22.1a"; locus "MER41_11q22.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0376"; model_cov "1008"; model_pct "17.0"; chr11 rmsk exon 99296637 99296727 334 - . gene_id "MER41_11q22.1a"; transcript_id "MER41_11q22.1a"; locus "MER41_11q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0376"; repClass "LTR"; repEnd "2710"; repFamily "ERV1"; repLeft "2648"; repStart "-3236"; chr11 rmsk exon 99296724 99297230 2020 - . gene_id "MER41_11q22.1a"; transcript_id "MER41_11q22.1a"; locus "MER41_11q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0376"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1374"; repStart "-3929"; chr11 rmsk exon 99297221 99297521 1903 - . gene_id "MER41_11q22.1a"; transcript_id "MER41_11q22.1a"; locus "MER41_11q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0376"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "288"; repStart "-5355"; ### ERV316A3_11q22.1d ### chr11 rmsk gene 99321460 99322004 . - . gene_id "ERV316A3_11q22.1d"; transcript_id "ERV316A3_11q22.1d"; locus "ERV316A3_11q22.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1994"; model_cov "551"; model_pct "10.5"; chr11 rmsk exon 99321460 99322004 1002 - . gene_id "ERV316A3_11q22.1d"; transcript_id "ERV316A3_11q22.1d"; locus "ERV316A3_11q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1994"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "3817"; repStart "-858"; ### MER4_11q22.1a ### chr11 rmsk gene 99425918 99430578 . - . gene_id "MER4_11q22.1a"; transcript_id "MER4_11q22.1a"; locus "MER4_11q22.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0556"; model_cov "3620"; model_pct "54.9"; chr11 rmsk exon 99425918 99427484 9526 - . gene_id "MER4_11q22.1a"; transcript_id "MER4_11q22.1a"; locus "MER4_11q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0556"; repClass "LTR"; repEnd "5025"; repFamily "ERV1"; repLeft "3467"; repStart "-1573"; chr11 rmsk exon 99427793 99428278 9526 - . gene_id "MER4_11q22.1a"; transcript_id "MER4_11q22.1a"; locus "MER4_11q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0556"; repClass "LTR"; repEnd "3466"; repFamily "ERV1"; repLeft "2933"; repStart "-3132"; chr11 rmsk exon 99428588 99430234 9526 - . gene_id "MER4_11q22.1a"; transcript_id "MER4_11q22.1a"; locus "MER4_11q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0556"; repClass "LTR"; repEnd "2932"; repFamily "ERV1"; repLeft "1459"; repStart "-3666"; chr11 rmsk exon 99430516 99430578 324 - . gene_id "MER4_11q22.1a"; transcript_id "MER4_11q22.1a"; locus "MER4_11q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0556"; repClass "LTR"; repEnd "2143"; repFamily "ERV1"; repLeft "2087"; repStart "-4455"; ### MER4_11q22.1b ### chr11 rmsk gene 99430674 99432197 . - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0557"; model_cov "766"; model_pct "11.6"; chr11 rmsk exon 99430674 99430729 322 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0557"; repClass "LTR"; repEnd "2666"; repFamily "ERV1"; repLeft "2619"; repStart "-3932"; chr11 rmsk exon 99430813 99430889 358 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0557"; repClass "LTR"; repEnd "960"; repFamily "ERV1"; repLeft "875"; repStart "-5638"; chr11 rmsk exon 99431026 99431111 305 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0557"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr11 rmsk exon 99431099 99431161 366 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0557"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "624"; repStart "-5912"; chr11 rmsk exon 99431149 99431667 2088 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0557"; repClass "LTR"; repEnd "490"; repFamily "ERV1"; repLeft "1"; repStart "-6108"; chr11 rmsk exon 99431675 99432197 1992 - . gene_id "MER4_11q22.1b"; transcript_id "MER4_11q22.1b"; locus "MER4_11q22.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0557"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### ERVLB4_11q22.1b ### chr11 rmsk gene 99491407 99492375 . - . gene_id "ERVLB4_11q22.1b"; transcript_id "ERVLB4_11q22.1b"; locus "ERVLB4_11q22.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1217"; model_cov "1041"; model_pct "18.2"; chr11 rmsk exon 99491407 99492375 1340 - . gene_id "ERVLB4_11q22.1b"; transcript_id "ERVLB4_11q22.1b"; locus "ERVLB4_11q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1217"; repClass "LTR"; repEnd "4908"; repFamily "ERVL"; repLeft "3867"; repStart "-806"; ### ERV316A3_11q22.1e ### chr11 rmsk gene 100515057 100520900 . + . gene_id "ERV316A3_11q22.1e"; transcript_id "ERV316A3_11q22.1e"; locus "ERV316A3_11q22.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1995"; model_cov "2899"; model_pct "55.5"; chr11 rmsk exon 100515057 100515208 487 + . gene_id "ERV316A3_11q22.1e"; transcript_id "ERV316A3_11q22.1e"; locus "ERV316A3_11q22.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1995"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "-278"; repStart "1"; chr11 rmsk exon 100515209 100517155 3666 + . gene_id "ERV316A3_11q22.1e"; transcript_id "ERV316A3_11q22.1e"; locus "ERV316A3_11q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1995"; repClass "LTR"; repEnd "4145"; repFamily "ERVL"; repLeft "-1081"; repStart "2233"; chr11 rmsk exon 100519620 100520598 3666 + . gene_id "ERV316A3_11q22.1e"; transcript_id "ERV316A3_11q22.1e"; locus "ERV316A3_11q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1995"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "-93"; repStart "4146"; chr11 rmsk exon 100520705 100520900 530 + . gene_id "ERV316A3_11q22.1e"; transcript_id "ERV316A3_11q22.1e"; locus "ERV316A3_11q22.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1995"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "-186"; repStart "41"; ### HERVIP10FH_11q22.1a ### chr11 rmsk gene 100744779 100749391 . - . gene_id "HERVIP10FH_11q22.1a"; transcript_id "HERVIP10FH_11q22.1a"; locus "HERVIP10FH_11q22.1a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0118"; model_cov "5416"; model_pct "100.0"; chr11 rmsk exon 100744779 100745261 3252 - . gene_id "HERVIP10FH_11q22.1a"; transcript_id "HERVIP10FH_11q22.1a"; locus "HERVIP10FH_11q22.1a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0118"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 100745262 100746772 9943 - . gene_id "HERVIP10FH_11q22.1a"; transcript_id "HERVIP10FH_11q22.1a"; locus "HERVIP10FH_11q22.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0118"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "3588"; repStart "0"; chr11 rmsk exon 100746839 100749391 15193 - . gene_id "HERVIP10FH_11q22.1a"; transcript_id "HERVIP10FH_11q22.1a"; locus "HERVIP10FH_11q22.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0118"; repClass "LTR"; repEnd "4068"; repFamily "ERV1"; repLeft "166"; repStart "-1034"; ### MER41_11q22.1b ### chr11 rmsk gene 101140207 101142841 . - . gene_id "MER41_11q22.1b"; transcript_id "MER41_11q22.1b"; locus "MER41_11q22.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0377"; model_cov "2146"; model_pct "36.1"; chr11 rmsk exon 101140207 101140753 4022 - . gene_id "MER41_11q22.1b"; transcript_id "MER41_11q22.1b"; locus "MER41_11q22.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0377"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr11 rmsk exon 101140756 101142841 13995 - . gene_id "MER41_11q22.1b"; transcript_id "MER41_11q22.1b"; locus "MER41_11q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0377"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "3796"; repStart "-4"; ### ERV316A3_11q22.1f ### chr11 rmsk gene 101179954 101182853 . + . gene_id "ERV316A3_11q22.1f"; transcript_id "ERV316A3_11q22.1f"; locus "ERV316A3_11q22.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1996"; model_cov "2518"; model_pct "48.2"; chr11 rmsk exon 101179954 101180309 828 + . gene_id "ERV316A3_11q22.1f"; transcript_id "ERV316A3_11q22.1f"; locus "ERV316A3_11q22.1f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1996"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "99"; chr11 rmsk exon 101180310 101182853 6040 + . gene_id "ERV316A3_11q22.1f"; transcript_id "ERV316A3_11q22.1f"; locus "ERV316A3_11q22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1996"; repClass "LTR"; repEnd "2519"; repFamily "ERVL"; repLeft "-2707"; repStart "1"; ### ERVLE_11q22.1c ### chr11 rmsk gene 101182982 101183665 . + . gene_id "ERVLE_11q22.1c"; transcript_id "ERVLE_11q22.1c"; locus "ERVLE_11q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2593"; model_cov "669"; model_pct "11.8"; chr11 rmsk exon 101182982 101183665 1106 + . gene_id "ERVLE_11q22.1c"; transcript_id "ERVLE_11q22.1c"; locus "ERVLE_11q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2593"; repClass "LTR"; repEnd "5256"; repFamily "ERVL"; repLeft "-411"; repStart "4587"; ### HERVK11_11q22.1a ### chr11 rmsk gene 101211205 101216672 . - . gene_id "HERVK11_11q22.1a"; transcript_id "HERVK11_11q22.1a"; locus "HERVK11_11q22.1a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0076"; model_cov "4330"; model_pct "54.4"; chr11 rmsk exon 101211205 101212342 5964 - . gene_id "HERVK11_11q22.1a"; transcript_id "HERVK11_11q22.1a"; locus "HERVK11_11q22.1a"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0076"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 101212345 101213671 58243 - . gene_id "HERVK11_11q22.1a"; transcript_id "HERVK11_11q22.1a"; locus "HERVK11_11q22.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0076"; repClass "LTR"; repEnd "7951"; repFamily "ERVK"; repLeft "6607"; repStart "-2"; chr11 rmsk exon 101213727 101216672 58243 - . gene_id "HERVK11_11q22.1a"; transcript_id "HERVK11_11q22.1a"; locus "HERVK11_11q22.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0076"; repClass "LTR"; repEnd "6606"; repFamily "ERVK"; repLeft "3620"; repStart "-1347"; ### HERVK11_11q22.1b ### chr11 rmsk gene 101216739 101221382 . - . gene_id "HERVK11_11q22.1b"; transcript_id "HERVK11_11q22.1b"; locus "HERVK11_11q22.1b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0077"; model_cov "3618"; model_pct "45.5"; chr11 rmsk exon 101216739 101220303 58243 - . gene_id "HERVK11_11q22.1b"; transcript_id "HERVK11_11q22.1b"; locus "HERVK11_11q22.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0077"; repClass "LTR"; repEnd "7951"; repFamily "ERVK"; repLeft "4333"; repStart "-2"; chr11 rmsk exon 101220321 101221382 3735 - . gene_id "HERVK11_11q22.1b"; transcript_id "HERVK11_11q22.1b"; locus "HERVK11_11q22.1b"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0077"; repClass "LTR"; repEnd "1251"; repFamily "ERVK"; repLeft "31"; repStart "-15"; ### HERV9_11q22.1b ### chr11 rmsk gene 101230104 101241805 . - . gene_id "HERV9_11q22.1b"; transcript_id "HERV9_11q22.1b"; locus "HERV9_11q22.1b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0135"; model_cov "8472"; model_pct "100.0"; chr11 rmsk exon 101230104 101231891 10460 - . gene_id "HERV9_11q22.1b"; transcript_id "HERV9_11q22.1b"; locus "HERV9_11q22.1b"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0135"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr11 rmsk exon 101231892 101240144 49051 - . gene_id "HERV9_11q22.1b"; transcript_id "HERV9_11q22.1b"; locus "HERV9_11q22.1b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0135"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "17"; repStart "0"; chr11 rmsk exon 101240152 101240205 375 - . gene_id "HERV9_11q22.1b"; transcript_id "HERV9_11q22.1b"; locus "HERV9_11q22.1b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0135"; repClass "LTR"; repEnd "54"; repFamily "ERV1"; repLeft "1"; repStart "-8382"; chr11 rmsk exon 101240206 101241805 11380 - . gene_id "HERV9_11q22.1b"; transcript_id "HERV9_11q22.1b"; locus "HERV9_11q22.1b"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0135"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HARLEQUIN_11q22.1b ### chr11 rmsk gene 101244310 101252307 . + . gene_id "HARLEQUIN_11q22.1b"; transcript_id "HARLEQUIN_11q22.1b"; locus "HARLEQUIN_11q22.1b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0136"; model_cov "5166"; model_pct "74.9"; chr11 rmsk exon 101244310 101244771 3495 + . gene_id "HARLEQUIN_11q22.1b"; transcript_id "HARLEQUIN_11q22.1b"; locus "HARLEQUIN_11q22.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0136"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 101245263 101246073 4728 + . gene_id "HARLEQUIN_11q22.1b"; transcript_id "HARLEQUIN_11q22.1b"; locus "HARLEQUIN_11q22.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0136"; repClass "LTR"; repEnd "1078"; repFamily "ERV1"; repLeft "-5818"; repStart "256"; chr11 rmsk exon 101247509 101251845 32080 + . gene_id "HARLEQUIN_11q22.1b"; transcript_id "HARLEQUIN_11q22.1b"; locus "HARLEQUIN_11q22.1b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0136"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2552"; chr11 rmsk exon 101251846 101252307 3653 + . gene_id "HARLEQUIN_11q22.1b"; transcript_id "HARLEQUIN_11q22.1b"; locus "HARLEQUIN_11q22.1b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0136"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_11q22.1b ### chr11 rmsk gene 101245150 101247443 . + . gene_id "HERVIP10FH_11q22.1b"; transcript_id "HERVIP10FH_11q22.1b"; locus "HERVIP10FH_11q22.1b"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0119"; model_cov "1589"; model_pct "31.1"; chr11 rmsk exon 101245150 101245266 747 + . gene_id "HERVIP10FH_11q22.1b"; transcript_id "HERVIP10FH_11q22.1b"; locus "HERVIP10FH_11q22.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0119"; repClass "LTR"; repEnd "-2366"; repFamily "ERV1"; repLeft "-7468"; repStart "-2482"; chr11 rmsk exon 101246071 101246722 1422 + . gene_id "HERVIP10FH_11q22.1b"; transcript_id "HERVIP10FH_11q22.1b"; locus "HERVIP10FH_11q22.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0119"; repClass "LTR"; repEnd "1411"; repFamily "ERV1"; repLeft "-3691"; repStart "704"; chr11 rmsk exon 101246693 101247443 3866 + . gene_id "HERVIP10FH_11q22.1b"; transcript_id "HERVIP10FH_11q22.1b"; locus "HERVIP10FH_11q22.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0119"; repClass "LTR"; repEnd "2676"; repFamily "ERV1"; repLeft "-2426"; repStart "1910"; ### ERV316A3_11q22.1g ### chr11 rmsk gene 101272337 101274875 . + . gene_id "ERV316A3_11q22.1g"; transcript_id "ERV316A3_11q22.1g"; locus "ERV316A3_11q22.1g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_1997"; model_cov "1936"; model_pct "37.0"; chr11 rmsk exon 101272337 101272432 242 + . gene_id "ERV316A3_11q22.1g"; transcript_id "ERV316A3_11q22.1g"; locus "ERV316A3_11q22.1g"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1997"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-21"; repStart "354"; chr11 rmsk exon 101272631 101274147 5168 + . gene_id "ERV316A3_11q22.1g"; transcript_id "ERV316A3_11q22.1g"; locus "ERV316A3_11q22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1997"; repClass "LTR"; repEnd "1736"; repFamily "ERVL"; repLeft "-3490"; repStart "174"; chr11 rmsk exon 101274350 101274703 5168 + . gene_id "ERV316A3_11q22.1g"; transcript_id "ERV316A3_11q22.1g"; locus "ERV316A3_11q22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_1997"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "-3115"; repStart "1737"; chr11 rmsk exon 101274717 101274875 449 + . gene_id "ERV316A3_11q22.1g"; transcript_id "ERV316A3_11q22.1g"; locus "ERV316A3_11q22.1g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_1997"; repClass "LTR"; repEnd "273"; repFamily "ERVL"; repLeft "-207"; repStart "116"; ### HML2_11q22.1 ### chr11 rmsk gene 101695063 101704528 . + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0091"; model_cov "7439"; model_pct "98.7"; chr11 rmsk exon 101695063 101696030 8870 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 101696031 101699581 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "3583"; repFamily "ERVK"; repLeft "-3953"; repStart "1"; chr11 rmsk exon 101699645 101703465 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "3584"; chr11 rmsk exon 101703561 101704528 8897 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_11q22.1h ### chr11 rmsk gene 101797179 101798452 . - . gene_id "ERV316A3_11q22.1h"; transcript_id "ERV316A3_11q22.1h"; locus "ERV316A3_11q22.1h"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2000"; model_cov "805"; model_pct "15.4"; chr11 rmsk exon 101797179 101797440 1142 - . gene_id "ERV316A3_11q22.1h"; transcript_id "ERV316A3_11q22.1h"; locus "ERV316A3_11q22.1h"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2000"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "1"; repStart "-218"; chr11 rmsk exon 101797449 101798267 1403 - . gene_id "ERV316A3_11q22.1h"; transcript_id "ERV316A3_11q22.1h"; locus "ERV316A3_11q22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2000"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4031"; repStart "-390"; chr11 rmsk exon 101798270 101798452 380 - . gene_id "ERV316A3_11q22.1h"; transcript_id "ERV316A3_11q22.1h"; locus "ERV316A3_11q22.1h"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2000"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "1"; repStart "-218"; ### ERV316A3_11q22.1i ### chr11 rmsk gene 101839149 101844136 . - . gene_id "ERV316A3_11q22.1i"; transcript_id "ERV316A3_11q22.1i"; locus "ERV316A3_11q22.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2001"; model_cov "2526"; model_pct "48.3"; chr11 rmsk exon 101839149 101839356 412 - . gene_id "ERV316A3_11q22.1i"; transcript_id "ERV316A3_11q22.1i"; locus "ERV316A3_11q22.1i"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2001"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "2"; repStart "-197"; chr11 rmsk exon 101839410 101840877 3613 - . gene_id "ERV316A3_11q22.1i"; transcript_id "ERV316A3_11q22.1i"; locus "ERV316A3_11q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2001"; repClass "LTR"; repEnd "3986"; repFamily "ERVL"; repLeft "2555"; repStart "-1240"; chr11 rmsk exon 101841026 101841574 1454 - . gene_id "ERV316A3_11q22.1i"; transcript_id "ERV316A3_11q22.1i"; locus "ERV316A3_11q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2001"; repClass "LTR"; repEnd "2537"; repFamily "ERVL"; repLeft "1988"; repStart "-2689"; chr11 rmsk exon 101843585 101844136 1030 - . gene_id "ERV316A3_11q22.1i"; transcript_id "ERV316A3_11q22.1i"; locus "ERV316A3_11q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2001"; repClass "LTR"; repEnd "1686"; repFamily "ERVL"; repLeft "1140"; repStart "-3540"; ### ERV316A3_11q22.1j ### chr11 rmsk gene 101851282 101852479 . - . gene_id "ERV316A3_11q22.1j"; transcript_id "ERV316A3_11q22.1j"; locus "ERV316A3_11q22.1j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2002"; model_cov "855"; model_pct "16.4"; chr11 rmsk exon 101851282 101851516 2300 - . gene_id "ERV316A3_11q22.1j"; transcript_id "ERV316A3_11q22.1j"; locus "ERV316A3_11q22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2002"; repClass "LTR"; repEnd "2807"; repFamily "ERVL"; repLeft "2579"; repStart "-2419"; chr11 rmsk exon 101851867 101852479 2300 - . gene_id "ERV316A3_11q22.1j"; transcript_id "ERV316A3_11q22.1j"; locus "ERV316A3_11q22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2002"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "1951"; repStart "-2648"; ### ERV316A3_11q22.1k ### chr11 rmsk gene 101858637 101860946 . - . gene_id "ERV316A3_11q22.1k"; transcript_id "ERV316A3_11q22.1k"; locus "ERV316A3_11q22.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2003"; model_cov "1959"; model_pct "37.5"; chr11 rmsk exon 101858637 101860529 3472 - . gene_id "ERV316A3_11q22.1k"; transcript_id "ERV316A3_11q22.1k"; locus "ERV316A3_11q22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2003"; repClass "LTR"; repEnd "1966"; repFamily "ERVL"; repLeft "7"; repStart "-3260"; chr11 rmsk exon 101860532 101860946 490 - . gene_id "ERV316A3_11q22.1k"; transcript_id "ERV316A3_11q22.1k"; locus "ERV316A3_11q22.1k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2003"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### ERV316A3_11q22.1l ### chr11 rmsk gene 102012288 102014937 . + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2004"; model_cov "1036"; model_pct "19.8"; chr11 rmsk exon 102012288 102012731 1094 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 102012732 102012896 345 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-4819"; repStart "231"; chr11 rmsk exon 102012921 102013196 651 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-4745"; repStart "182"; chr11 rmsk exon 102013541 102013952 1354 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "1644"; repFamily "ERVL"; repLeft "-3582"; repStart "1254"; chr11 rmsk exon 102014555 102014750 1354 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "1818"; repFamily "ERVL"; repLeft "-3408"; repStart "1647"; chr11 rmsk exon 102014849 102014937 358 + . gene_id "ERV316A3_11q22.1l"; transcript_id "ERV316A3_11q22.1l"; locus "ERV316A3_11q22.1l"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2004"; repClass "LTR"; repEnd "90"; repFamily "ERVL"; repLeft "-372"; repStart "1"; ### ERVLE_11q22.1d ### chr11 rmsk gene 102256361 102260465 . - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2594"; model_cov "1248"; model_pct "22.0"; chr11 rmsk exon 102256361 102256652 1331 - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2594"; repClass "LTR"; repEnd "3505"; repFamily "ERVL"; repLeft "3208"; repStart "-2162"; chr11 rmsk exon 102256954 102257211 1331 - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2594"; repClass "LTR"; repEnd "3207"; repFamily "ERVL"; repLeft "2967"; repStart "-2460"; chr11 rmsk exon 102259441 102259599 460 - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2594"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "2693"; repStart "-2817"; chr11 rmsk exon 102259627 102259994 1090 - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2594"; repClass "LTR"; repEnd "1655"; repFamily "ERVL"; repLeft "1262"; repStart "-4012"; chr11 rmsk exon 102260297 102260465 1090 - . gene_id "ERVLE_11q22.1d"; transcript_id "ERVLE_11q22.1d"; locus "ERVLE_11q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2594"; repClass "LTR"; repEnd "1261"; repFamily "ERVL"; repLeft "1100"; repStart "-4406"; ### ERV316A3_11q22.1m ### chr11 rmsk gene 102273455 102275863 . - . gene_id "ERV316A3_11q22.1m"; transcript_id "ERV316A3_11q22.1m"; locus "ERV316A3_11q22.1m"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2005"; model_cov "1462"; model_pct "28.0"; chr11 rmsk exon 102273455 102273974 1589 - . gene_id "ERV316A3_11q22.1m"; transcript_id "ERV316A3_11q22.1m"; locus "ERV316A3_11q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2005"; repClass "LTR"; repEnd "2508"; repFamily "ERVL"; repLeft "1976"; repStart "-2718"; chr11 rmsk exon 102274268 102274635 2170 - . gene_id "ERV316A3_11q22.1m"; transcript_id "ERV316A3_11q22.1m"; locus "ERV316A3_11q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2005"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "1271"; repStart "-3589"; chr11 rmsk exon 102274989 102275145 2170 - . gene_id "ERV316A3_11q22.1m"; transcript_id "ERV316A3_11q22.1m"; locus "ERV316A3_11q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2005"; repClass "LTR"; repEnd "1270"; repFamily "ERVL"; repLeft "1134"; repStart "-3956"; chr11 rmsk exon 102275453 102275863 2170 - . gene_id "ERV316A3_11q22.1m"; transcript_id "ERV316A3_11q22.1m"; locus "ERV316A3_11q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2005"; repClass "LTR"; repEnd "1133"; repFamily "ERVL"; repLeft "705"; repStart "-4093"; ### ERV316A3_11q22.2 ### chr11 rmsk gene 102545302 102545908 . - . gene_id "ERV316A3_11q22.2"; transcript_id "ERV316A3_11q22.2"; locus "ERV316A3_11q22.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2006"; model_cov "608"; model_pct "11.6"; chr11 rmsk exon 102545302 102545908 1029 - . gene_id "ERV316A3_11q22.2"; transcript_id "ERV316A3_11q22.2"; locus "ERV316A3_11q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2006"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "3599"; repStart "-1019"; ### ERVLB4_11q22.2 ### chr11 rmsk gene 102786635 102788456 . - . gene_id "ERVLB4_11q22.2"; transcript_id "ERVLB4_11q22.2"; locus "ERVLB4_11q22.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1219"; model_cov "1353"; model_pct "23.7"; chr11 rmsk exon 102786635 102787239 778 - . gene_id "ERVLB4_11q22.2"; transcript_id "ERVLB4_11q22.2"; locus "ERVLB4_11q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1219"; repClass "LTR"; repEnd "2499"; repFamily "ERVL"; repLeft "1914"; repStart "-3215"; chr11 rmsk exon 102787692 102788456 671 - . gene_id "ERVLB4_11q22.2"; transcript_id "ERVLB4_11q22.2"; locus "ERVLB4_11q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1219"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "700"; repStart "-4246"; ### HERVH_11q22.2 ### chr11 rmsk gene 102904000 102909908 . - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0891"; model_cov "5128"; model_pct "66.5"; chr11 rmsk exon 102904000 102904321 1871 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 102904322 102904696 2428 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 102904697 102904923 1271 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr11 rmsk exon 102904904 102905566 4541 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 102905569 102906418 5737 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr11 rmsk exon 102906398 102909498 16406 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 102909501 102909908 2835 - . gene_id "HERVH_11q22.2"; transcript_id "HERVH_11q22.2"; locus "HERVH_11q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0891"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL18_11q22.3 ### chr11 rmsk gene 103541164 103545211 . - . gene_id "HERVL18_11q22.3"; transcript_id "HERVL18_11q22.3"; locus "HERVL18_11q22.3"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0114"; model_cov "3801"; model_pct "62.9"; chr11 rmsk exon 103541164 103541495 2155 - . gene_id "HERVL18_11q22.3"; transcript_id "HERVL18_11q22.3"; locus "HERVL18_11q22.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0114"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 103541497 103543732 9407 - . gene_id "HERVL18_11q22.3"; transcript_id "HERVL18_11q22.3"; locus "HERVL18_11q22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0114"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "3772"; repStart "0"; chr11 rmsk exon 103543728 103544812 6665 - . gene_id "HERVL18_11q22.3"; transcript_id "HERVL18_11q22.3"; locus "HERVL18_11q22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0114"; repClass "LTR"; repEnd "3666"; repFamily "ERVL"; repLeft "2573"; repStart "-2381"; chr11 rmsk exon 103544803 103545211 2220 - . gene_id "HERVL18_11q22.3"; transcript_id "HERVL18_11q22.3"; locus "HERVL18_11q22.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0114"; repClass "LTR"; repEnd "2161"; repFamily "ERVL"; repLeft "1728"; repStart "-3886"; ### HARLEQUIN_11q22.3 ### chr11 rmsk gene 103572042 103579117 . + . gene_id "HARLEQUIN_11q22.3"; transcript_id "HARLEQUIN_11q22.3"; locus "HARLEQUIN_11q22.3"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0137"; model_cov "6208"; model_pct "90.0"; chr11 rmsk exon 103572042 103572502 3452 + . gene_id "HARLEQUIN_11q22.3"; transcript_id "HARLEQUIN_11q22.3"; locus "HARLEQUIN_11q22.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0137"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 103572511 103577581 36672 + . gene_id "HARLEQUIN_11q22.3"; transcript_id "HARLEQUIN_11q22.3"; locus "HARLEQUIN_11q22.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0137"; repClass "LTR"; repEnd "5123"; repFamily "ERV1"; repLeft "-1773"; repStart "1"; chr11 rmsk exon 103577569 103578647 7020 + . gene_id "HARLEQUIN_11q22.3"; transcript_id "HARLEQUIN_11q22.3"; locus "HARLEQUIN_11q22.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0137"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5810"; chr11 rmsk exon 103578652 103579117 2976 + . gene_id "HARLEQUIN_11q22.3"; transcript_id "HARLEQUIN_11q22.3"; locus "HARLEQUIN_11q22.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0137"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "8"; ### ERVLE_11q22.3a ### chr11 rmsk gene 103865276 103869812 . - . gene_id "ERVLE_11q22.3a"; transcript_id "ERVLE_11q22.3a"; locus "ERVLE_11q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2595"; model_cov "4667"; model_pct "82.4"; chr11 rmsk exon 103865276 103868488 8954 - . gene_id "ERVLE_11q22.3a"; transcript_id "ERVLE_11q22.3a"; locus "ERVLE_11q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2595"; repClass "LTR"; repEnd "5444"; repFamily "ERVL"; repLeft "2101"; repStart "-223"; chr11 rmsk exon 103868512 103868679 519 - . gene_id "ERVLE_11q22.3a"; transcript_id "ERVLE_11q22.3a"; locus "ERVLE_11q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2595"; repClass "LTR"; repEnd "1981"; repFamily "ERVL"; repLeft "1814"; repStart "-3686"; chr11 rmsk exon 103868692 103868990 708 - . gene_id "ERVLE_11q22.3a"; transcript_id "ERVLE_11q22.3a"; locus "ERVLE_11q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2595"; repClass "LTR"; repEnd "1742"; repFamily "ERVL"; repLeft "1432"; repStart "-3925"; chr11 rmsk exon 103868978 103869812 1312 - . gene_id "ERVLE_11q22.3a"; transcript_id "ERVLE_11q22.3a"; locus "ERVLE_11q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2595"; repClass "LTR"; repEnd "957"; repFamily "ERVL"; repLeft "110"; repStart "-4710"; ### HUERSP1_11q22.3a ### chr11 rmsk gene 104490194 104495021 . + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0136"; model_cov "3667"; model_pct "58.6"; chr11 rmsk exon 104490194 104490338 1041 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "547"; chr11 rmsk exon 104490339 104491597 11656 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "1240"; repFamily "ERV1"; repLeft "-5023"; repStart "1"; chr11 rmsk exon 104491639 104492562 11656 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "2305"; repFamily "ERV1"; repLeft "-3958"; repStart "1411"; chr11 rmsk exon 104492557 104493170 7320 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "5183"; repFamily "ERV1"; repLeft "-1080"; repStart "4600"; chr11 rmsk exon 104493477 104494432 7320 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5312"; chr11 rmsk exon 104494433 104495021 4028 + . gene_id "HUERSP1_11q22.3a"; transcript_id "HUERSP1_11q22.3a"; locus "HUERSP1_11q22.3a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0136"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "-101"; repStart "1"; ### ERVLE_11q22.3b ### chr11 rmsk gene 104529437 104531122 . + . gene_id "ERVLE_11q22.3b"; transcript_id "ERVLE_11q22.3b"; locus "ERVLE_11q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2596"; model_cov "815"; model_pct "14.4"; chr11 rmsk exon 104529437 104529841 1249 + . gene_id "ERVLE_11q22.3b"; transcript_id "ERVLE_11q22.3b"; locus "ERVLE_11q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2596"; repClass "LTR"; repEnd "4015"; repFamily "ERVL"; repLeft "-1652"; repStart "3605"; chr11 rmsk exon 104529916 104530187 567 + . gene_id "ERVLE_11q22.3b"; transcript_id "ERVLE_11q22.3b"; locus "ERVLE_11q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2596"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "-1237"; repStart "4139"; chr11 rmsk exon 104531002 104531122 273 + . gene_id "ERVLE_11q22.3b"; transcript_id "ERVLE_11q22.3b"; locus "ERVLE_11q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2596"; repClass "LTR"; repEnd "5516"; repFamily "ERVL"; repLeft "-151"; repStart "5402"; ### ERV316A3_11q22.3a ### chr11 rmsk gene 104589091 104591278 . + . gene_id "ERV316A3_11q22.3a"; transcript_id "ERV316A3_11q22.3a"; locus "ERV316A3_11q22.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2007"; model_cov "1543"; model_pct "29.5"; chr11 rmsk exon 104589091 104589333 348 + . gene_id "ERV316A3_11q22.3a"; transcript_id "ERV316A3_11q22.3a"; locus "ERV316A3_11q22.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2007"; repClass "LTR"; repEnd "264"; repFamily "ERVL"; repLeft "-158"; repStart "4"; chr11 rmsk exon 104589753 104590826 1526 + . gene_id "ERV316A3_11q22.3a"; transcript_id "ERV316A3_11q22.3a"; locus "ERV316A3_11q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2007"; repClass "LTR"; repEnd "1495"; repFamily "ERVL"; repLeft "-3731"; repStart "383"; chr11 rmsk exon 104590848 104591278 1171 + . gene_id "ERV316A3_11q22.3a"; transcript_id "ERV316A3_11q22.3a"; locus "ERV316A3_11q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2007"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "-2972"; repStart "1823"; ### ERV316A3_11q22.3b ### chr11 rmsk gene 104658554 104660145 . + . gene_id "ERV316A3_11q22.3b"; transcript_id "ERV316A3_11q22.3b"; locus "ERV316A3_11q22.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2008"; model_cov "1284"; model_pct "24.6"; chr11 rmsk exon 104658554 104659144 1093 + . gene_id "ERV316A3_11q22.3b"; transcript_id "ERV316A3_11q22.3b"; locus "ERV316A3_11q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2008"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "-861"; repStart "3799"; chr11 rmsk exon 104659461 104660145 1093 + . gene_id "ERV316A3_11q22.3b"; transcript_id "ERV316A3_11q22.3b"; locus "ERV316A3_11q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2008"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4366"; ### HERVFH19_11q22.3 ### chr11 rmsk gene 104739963 104743520 . - . gene_id "HERVFH19_11q22.3"; transcript_id "HERVFH19_11q22.3"; locus "HERVFH19_11q22.3"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0031"; model_cov "2928"; model_pct "37.9"; chr11 rmsk exon 104739963 104740109 379 - . gene_id "HERVFH19_11q22.3"; transcript_id "HERVFH19_11q22.3"; locus "HERVFH19_11q22.3"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0031"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "327"; repStart "-12"; chr11 rmsk exon 104740286 104742316 4418 - . gene_id "HERVFH19_11q22.3"; transcript_id "HERVFH19_11q22.3"; locus "HERVFH19_11q22.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0031"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "5717"; repStart "0"; chr11 rmsk exon 104742326 104742467 538 - . gene_id "HERVFH19_11q22.3"; transcript_id "HERVFH19_11q22.3"; locus "HERVFH19_11q22.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0031"; repClass "LTR"; repEnd "5313"; repFamily "ERV1"; repLeft "5170"; repStart "-2406"; chr11 rmsk exon 104742730 104743520 3118 - . gene_id "HERVFH19_11q22.3"; transcript_id "HERVFH19_11q22.3"; locus "HERVFH19_11q22.3"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0031"; repClass "LTR"; repEnd "2480"; repFamily "ERV1"; repLeft "1697"; repStart "-5239"; ### HERVL40_11q22.3a ### chr11 rmsk gene 104817180 104818421 . - . gene_id "HERVL40_11q22.3a"; transcript_id "HERVL40_11q22.3a"; locus "HERVL40_11q22.3a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0301"; model_cov "1246"; model_pct "22.5"; chr11 rmsk exon 104817180 104817456 840 - . gene_id "HERVL40_11q22.3a"; transcript_id "HERVL40_11q22.3a"; locus "HERVL40_11q22.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0301"; repClass "LTR"; repEnd "4403"; repFamily "ERVL"; repLeft "4126"; repStart "-1127"; chr11 rmsk exon 104817474 104818421 1852 - . gene_id "HERVL40_11q22.3a"; transcript_id "HERVL40_11q22.3a"; locus "HERVL40_11q22.3a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0301"; repClass "LTR"; repEnd "4069"; repFamily "ERVL"; repLeft "3100"; repStart "-1461"; ### HUERSP1_11q22.3b ### chr11 rmsk gene 104961004 104966216 . + . gene_id "HUERSP1_11q22.3b"; transcript_id "HUERSP1_11q22.3b"; locus "HUERSP1_11q22.3b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0137"; model_cov "4376"; model_pct "69.9"; chr11 rmsk exon 104961004 104961060 264 + . gene_id "HUERSP1_11q22.3b"; transcript_id "HUERSP1_11q22.3b"; locus "HUERSP1_11q22.3b"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0137"; repClass "LTR"; repEnd "60"; repFamily "ERV1"; repLeft "-667"; repStart "1"; chr11 rmsk exon 104961061 104964024 19205 + . gene_id "HUERSP1_11q22.3b"; transcript_id "HUERSP1_11q22.3b"; locus "HUERSP1_11q22.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0137"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3311"; repStart "16"; chr11 rmsk exon 104964025 104965488 10307 + . gene_id "HUERSP1_11q22.3b"; transcript_id "HUERSP1_11q22.3b"; locus "HUERSP1_11q22.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0137"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4823"; chr11 rmsk exon 104965489 104966216 2741 + . gene_id "HUERSP1_11q22.3b"; transcript_id "HUERSP1_11q22.3b"; locus "HUERSP1_11q22.3b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0137"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_11q22.3a ### chr11 rmsk gene 104972403 104975175 . - . gene_id "MER4B_11q22.3a"; transcript_id "MER4B_11q22.3a"; locus "MER4B_11q22.3a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0319"; model_cov "1057"; model_pct "15.6"; chr11 rmsk exon 104972403 104972568 5313 - . gene_id "MER4B_11q22.3a"; transcript_id "MER4B_11q22.3a"; locus "MER4B_11q22.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0319"; repClass "LTR"; repEnd "1059"; repFamily "ERV1"; repLeft "831"; repStart "-5699"; chr11 rmsk exon 104973615 104974430 5313 - . gene_id "MER4B_11q22.3a"; transcript_id "MER4B_11q22.3a"; locus "MER4B_11q22.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0319"; repClass "LTR"; repEnd "830"; repFamily "ERV1"; repLeft "1"; repStart "-5928"; chr11 rmsk exon 104974431 104975175 5405 - . gene_id "MER4B_11q22.3a"; transcript_id "MER4B_11q22.3a"; locus "MER4B_11q22.3a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0319"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "24"; repStart "0"; ### HUERSP1_11q22.3c ### chr11 rmsk gene 105074657 105077688 . + . gene_id "HUERSP1_11q22.3c"; transcript_id "HUERSP1_11q22.3c"; locus "HUERSP1_11q22.3c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0138"; model_cov "2227"; model_pct "35.6"; chr11 rmsk exon 105074657 105075462 5416 + . gene_id "HUERSP1_11q22.3c"; transcript_id "HUERSP1_11q22.3c"; locus "HUERSP1_11q22.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0138"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3311"; repStart "2165"; chr11 rmsk exon 105075463 105076960 9382 + . gene_id "HUERSP1_11q22.3c"; transcript_id "HUERSP1_11q22.3c"; locus "HUERSP1_11q22.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0138"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4823"; chr11 rmsk exon 105076961 105077688 2804 + . gene_id "HUERSP1_11q22.3c"; transcript_id "HUERSP1_11q22.3c"; locus "HUERSP1_11q22.3c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0138"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP1_11q22.3d ### chr11 rmsk gene 105104082 105107758 . + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0139"; model_cov "2944"; model_pct "47.0"; chr11 rmsk exon 105104082 105104318 8489 + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0139"; repClass "LTR"; repEnd "1695"; repFamily "ERV1"; repLeft "-4568"; repStart "1446"; chr11 rmsk exon 105104374 105105563 8489 + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0139"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "-3311"; repStart "1696"; chr11 rmsk exon 105105564 105106563 8651 + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0139"; repClass "LTR"; repEnd "5848"; repFamily "ERV1"; repLeft "-415"; repStart "4823"; chr11 rmsk exon 105106628 105107030 8651 + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0139"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5849"; chr11 rmsk exon 105107031 105107758 2780 + . gene_id "HUERSP1_11q22.3d"; transcript_id "HUERSP1_11q22.3d"; locus "HUERSP1_11q22.3d"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0139"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q22.3c ### chr11 rmsk gene 105207831 105208972 . - . gene_id "ERV316A3_11q22.3c"; transcript_id "ERV316A3_11q22.3c"; locus "ERV316A3_11q22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2009"; model_cov "710"; model_pct "13.6"; chr11 rmsk exon 105207831 105207943 261 - . gene_id "ERV316A3_11q22.3c"; transcript_id "ERV316A3_11q22.3c"; locus "ERV316A3_11q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2009"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "4655"; repStart "-443"; chr11 rmsk exon 105208419 105208972 1258 - . gene_id "ERV316A3_11q22.3c"; transcript_id "ERV316A3_11q22.3c"; locus "ERV316A3_11q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2009"; repClass "LTR"; repEnd "4132"; repFamily "ERVL"; repLeft "3550"; repStart "-1094"; ### ERVLE_11q22.3c ### chr11 rmsk gene 105328338 105330740 . + . gene_id "ERVLE_11q22.3c"; transcript_id "ERVLE_11q22.3c"; locus "ERVLE_11q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2597"; model_cov "1866"; model_pct "32.9"; chr11 rmsk exon 105328338 105329658 5089 + . gene_id "ERVLE_11q22.3c"; transcript_id "ERVLE_11q22.3c"; locus "ERVLE_11q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2597"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1035"; repStart "3293"; chr11 rmsk exon 105329768 105329825 316 + . gene_id "ERVLE_11q22.3c"; transcript_id "ERVLE_11q22.3c"; locus "ERVLE_11q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2597"; repClass "LTR"; repEnd "4909"; repFamily "ERVL"; repLeft "-758"; repStart "4852"; chr11 rmsk exon 105330038 105330389 1296 + . gene_id "ERVLE_11q22.3c"; transcript_id "ERVLE_11q22.3c"; locus "ERVLE_11q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2597"; repClass "LTR"; repEnd "5285"; repFamily "ERVL"; repLeft "-382"; repStart "4946"; chr11 rmsk exon 105330613 105330740 367 + . gene_id "ERVLE_11q22.3c"; transcript_id "ERVLE_11q22.3c"; locus "ERVLE_11q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2597"; repClass "LTR"; repEnd "5545"; repFamily "ERVL"; repLeft "-122"; repStart "5414"; ### ERVLB4_11q22.3a ### chr11 rmsk gene 105346890 105347856 . + . gene_id "ERVLB4_11q22.3a"; transcript_id "ERVLB4_11q22.3a"; locus "ERVLB4_11q22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1220"; model_cov "918"; model_pct "16.1"; chr11 rmsk exon 105346890 105347795 4826 + . gene_id "ERVLB4_11q22.3a"; transcript_id "ERVLB4_11q22.3a"; locus "ERVLB4_11q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1220"; repClass "LTR"; repEnd "4898"; repFamily "ERVL"; repLeft "-816"; repStart "3980"; chr11 rmsk exon 105347796 105347856 225 + . gene_id "ERVLB4_11q22.3a"; transcript_id "ERVLB4_11q22.3a"; locus "ERVLB4_11q22.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1220"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "493"; ### ERVLB4_11q22.3b ### chr11 rmsk gene 105679012 105680618 . - . gene_id "ERVLB4_11q22.3b"; transcript_id "ERVLB4_11q22.3b"; locus "ERVLB4_11q22.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1221"; model_cov "1272"; model_pct "22.3"; chr11 rmsk exon 105679012 105679396 1693 - . gene_id "ERVLB4_11q22.3b"; transcript_id "ERVLB4_11q22.3b"; locus "ERVLB4_11q22.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1221"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "4"; repStart "-8"; chr11 rmsk exon 105679399 105680618 6221 - . gene_id "ERVLB4_11q22.3b"; transcript_id "ERVLB4_11q22.3b"; locus "ERVLB4_11q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1221"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4442"; repStart "0"; ### HERVL40_11q22.3b ### chr11 rmsk gene 105824822 105827156 . - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0302"; model_cov "2115"; model_pct "38.2"; chr11 rmsk exon 105824822 105825357 2042 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "3534"; repFamily "ERVL"; repLeft "3011"; repStart "-1996"; chr11 rmsk exon 105825391 105825772 1434 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "2926"; repFamily "ERVL"; repLeft "2522"; repStart "-2604"; chr11 rmsk exon 105825772 105826272 1235 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "1106"; repStart "-3919"; chr11 rmsk exon 105826297 105826448 791 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "750"; repFamily "ERVL"; repLeft "597"; repStart "-4780"; chr11 rmsk exon 105826522 105827063 1597 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "40"; repStart "-4960"; chr11 rmsk exon 105827097 105827156 387 - . gene_id "HERVL40_11q22.3b"; transcript_id "HERVL40_11q22.3b"; locus "HERVL40_11q22.3b"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0302"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "403"; repStart "0"; ### ERVLE_11q22.3d ### chr11 rmsk gene 106102270 106105246 . + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2598"; model_cov "1809"; model_pct "31.9"; chr11 rmsk exon 106102270 106102562 475 + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2598"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4977"; repStart "377"; chr11 rmsk exon 106103264 106104154 1394 + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2598"; repClass "LTR"; repEnd "2011"; repFamily "ERVL"; repLeft "-3656"; repStart "1017"; chr11 rmsk exon 106104479 106104678 790 + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2598"; repClass "LTR"; repEnd "2291"; repFamily "ERVL"; repLeft "-3376"; repStart "2093"; chr11 rmsk exon 106104866 106105086 528 + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2598"; repClass "LTR"; repEnd "2555"; repFamily "ERVL"; repLeft "-3112"; repStart "2313"; chr11 rmsk exon 106105184 106105246 369 + . gene_id "ERVLE_11q22.3d"; transcript_id "ERVLE_11q22.3d"; locus "ERVLE_11q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2598"; repClass "LTR"; repEnd "2784"; repFamily "ERVL"; repLeft "-2883"; repStart "2722"; ### HERVL_11q22.3a ### chr11 rmsk gene 106114832 106118062 . + . gene_id "HERVL_11q22.3a"; transcript_id "HERVL_11q22.3a"; locus "HERVL_11q22.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0929"; model_cov "2689"; model_pct "47.6"; chr11 rmsk exon 106114832 106117525 19411 + . gene_id "HERVL_11q22.3a"; transcript_id "HERVL_11q22.3a"; locus "HERVL_11q22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0929"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2965"; chr11 rmsk exon 106117526 106118062 1752 + . gene_id "HERVL_11q22.3a"; transcript_id "HERVL_11q22.3a"; locus "HERVL_11q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0929"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### MER41_11q22.3a ### chr11 rmsk gene 106179278 106179786 . + . gene_id "MER41_11q22.3a"; transcript_id "MER41_11q22.3a"; locus "MER41_11q22.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0378"; model_cov "597"; model_pct "10.0"; chr11 rmsk exon 106179278 106179727 1632 + . gene_id "MER41_11q22.3a"; transcript_id "MER41_11q22.3a"; locus "MER41_11q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0378"; repClass "LTR"; repEnd "3367"; repFamily "ERV1"; repLeft "-2579"; repStart "2859"; chr11 rmsk exon 106179707 106179786 391 + . gene_id "MER41_11q22.3a"; transcript_id "MER41_11q22.3a"; locus "MER41_11q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0378"; repClass "LTR"; repEnd "3028"; repFamily "ERV1"; repLeft "-2918"; repStart "2939"; ### PABLA_11q22.3 ### chr11 rmsk gene 106186959 106188762 . + . gene_id "PABLA_11q22.3"; transcript_id "PABLA_11q22.3"; locus "PABLA_11q22.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0109"; model_cov "1085"; model_pct "21.6"; chr11 rmsk exon 106186959 106187603 4631 + . gene_id "PABLA_11q22.3"; transcript_id "PABLA_11q22.3"; locus "PABLA_11q22.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0109"; repClass "LTR"; repEnd "2420"; repFamily "ERV1"; repLeft "-2595"; repStart "2209"; chr11 rmsk exon 106187912 106188762 4631 + . gene_id "PABLA_11q22.3"; transcript_id "PABLA_11q22.3"; locus "PABLA_11q22.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0109"; repClass "LTR"; repEnd "3295"; repFamily "ERV1"; repLeft "-1720"; repStart "2421"; ### ERVLE_11q22.3e ### chr11 rmsk gene 106197181 106199766 . - . gene_id "ERVLE_11q22.3e"; transcript_id "ERVLE_11q22.3e"; locus "ERVLE_11q22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2599"; model_cov "1343"; model_pct "23.7"; chr11 rmsk exon 106197181 106197332 285 - . gene_id "ERVLE_11q22.3e"; transcript_id "ERVLE_11q22.3e"; locus "ERVLE_11q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2599"; repClass "LTR"; repEnd "3540"; repFamily "ERVL"; repLeft "3391"; repStart "-2127"; chr11 rmsk exon 106198572 106199138 667 - . gene_id "ERVLE_11q22.3e"; transcript_id "ERVLE_11q22.3e"; locus "ERVLE_11q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2599"; repClass "LTR"; repEnd "3191"; repFamily "ERVL"; repLeft "2635"; repStart "-2476"; chr11 rmsk exon 106199160 106199766 1153 - . gene_id "ERVLE_11q22.3e"; transcript_id "ERVLE_11q22.3e"; locus "ERVLE_11q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2599"; repClass "LTR"; repEnd "2540"; repFamily "ERVL"; repLeft "1902"; repStart "-3127"; ### ERV316A3_11q22.3d ### chr11 rmsk gene 106207739 106209637 . - . gene_id "ERV316A3_11q22.3d"; transcript_id "ERV316A3_11q22.3d"; locus "ERV316A3_11q22.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2010"; model_cov "1187"; model_pct "22.7"; chr11 rmsk exon 106207739 106208743 3236 - . gene_id "ERV316A3_11q22.3d"; transcript_id "ERV316A3_11q22.3d"; locus "ERV316A3_11q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2010"; repClass "LTR"; repEnd "4571"; repFamily "ERVL"; repLeft "3556"; repStart "-655"; chr11 rmsk exon 106209472 106209637 290 - . gene_id "ERV316A3_11q22.3d"; transcript_id "ERV316A3_11q22.3d"; locus "ERV316A3_11q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2010"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2810"; repStart "-2244"; ### HERVI_11q22.3 ### chr11 rmsk gene 106222427 106230586 . + . gene_id "HERVI_11q22.3"; transcript_id "HERVI_11q22.3"; locus "HERVI_11q22.3"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0024"; model_cov "7181"; model_pct "92.2"; chr11 rmsk exon 106222427 106222849 2228 + . gene_id "HERVI_11q22.3"; transcript_id "HERVI_11q22.3"; locus "HERVI_11q22.3"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0024"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-49"; repStart "1"; chr11 rmsk exon 106222878 106223353 1650 + . gene_id "HERVI_11q22.3"; transcript_id "HERVI_11q22.3"; locus "HERVI_11q22.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0024"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "-7059"; repStart "272"; chr11 rmsk exon 106223348 106230088 30268 + . gene_id "HERVI_11q22.3"; transcript_id "HERVI_11q22.3"; locus "HERVI_11q22.3"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0024"; repClass "LTR"; repEnd "7784"; repFamily "ERV1"; repLeft "-1"; repStart "1057"; chr11 rmsk exon 106230092 106230586 2731 + . gene_id "HERVI_11q22.3"; transcript_id "HERVI_11q22.3"; locus "HERVI_11q22.3"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0024"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_11q22.3 ### chr11 rmsk gene 106271690 106273238 . + . gene_id "ERVL_11q22.3"; transcript_id "ERVL_11q22.3"; locus "ERVL_11q22.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0312"; model_cov "828"; model_pct "14.4"; chr11 rmsk exon 106271690 106272505 4662 + . gene_id "ERVL_11q22.3"; transcript_id "ERVL_11q22.3"; locus "ERVL_11q22.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0312"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "-633"; repStart "4296"; chr11 rmsk exon 106273171 106273238 231 + . gene_id "ERVL_11q22.3"; transcript_id "ERVL_11q22.3"; locus "ERVL_11q22.3"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0312"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "0"; repStart "640"; ### PRIMA41_11q22.3 ### chr11 rmsk gene 106299423 106302265 . - . gene_id "PRIMA41_11q22.3"; transcript_id "PRIMA41_11q22.3"; locus "PRIMA41_11q22.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0093"; model_cov "2883"; model_pct "37.2"; chr11 rmsk exon 106299423 106300887 1223 - . gene_id "PRIMA41_11q22.3"; transcript_id "PRIMA41_11q22.3"; locus "PRIMA41_11q22.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0093"; repClass "LTR"; repEnd "6049"; repFamily "ERV1"; repLeft "4554"; repStart "-1707"; chr11 rmsk exon 106301179 106302265 1173 - . gene_id "PRIMA41_11q22.3"; transcript_id "PRIMA41_11q22.3"; locus "PRIMA41_11q22.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0093"; repClass "LTR"; repEnd "3335"; repFamily "ERV1"; repLeft "1947"; repStart "-4421"; ### HERVL_11q22.3b ### chr11 rmsk gene 106829530 106830803 . + . gene_id "HERVL_11q22.3b"; transcript_id "HERVL_11q22.3b"; locus "HERVL_11q22.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0930"; model_cov "754"; model_pct "13.3"; chr11 rmsk exon 106829530 106829584 407 + . gene_id "HERVL_11q22.3b"; transcript_id "HERVL_11q22.3b"; locus "HERVL_11q22.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0930"; repClass "LTR"; repEnd "55"; repFamily "ERVL"; repLeft "-398"; repStart "1"; chr11 rmsk exon 106829592 106830355 5541 + . gene_id "HERVL_11q22.3b"; transcript_id "HERVL_11q22.3b"; locus "HERVL_11q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0930"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4900"; chr11 rmsk exon 106830356 106830803 3435 + . gene_id "HERVL_11q22.3b"; transcript_id "HERVL_11q22.3b"; locus "HERVL_11q22.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0930"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_11q22.3c ### chr11 rmsk gene 107231914 107238231 . - . gene_id "HERVL_11q22.3c"; transcript_id "HERVL_11q22.3c"; locus "HERVL_11q22.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0931"; model_cov "5467"; model_pct "96.7"; chr11 rmsk exon 107231914 107232353 3361 - . gene_id "HERVL_11q22.3c"; transcript_id "HERVL_11q22.3c"; locus "HERVL_11q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0931"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-110"; repStart "-34"; chr11 rmsk exon 107232354 107233291 7542 - . gene_id "HERVL_11q22.3c"; transcript_id "HERVL_11q22.3c"; locus "HERVL_11q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0931"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4709"; repStart "0"; chr11 rmsk exon 107233289 107237787 36490 - . gene_id "HERVL_11q22.3c"; transcript_id "HERVL_11q22.3c"; locus "HERVL_11q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0931"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "1"; repStart "-1131"; chr11 rmsk exon 107237788 107238231 3697 - . gene_id "HERVL_11q22.3c"; transcript_id "HERVL_11q22.3c"; locus "HERVL_11q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0931"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4B_11q22.3b ### chr11 rmsk gene 107250831 107254269 . - . gene_id "MER4B_11q22.3b"; transcript_id "MER4B_11q22.3b"; locus "MER4B_11q22.3b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0320"; model_cov "1835"; model_pct "27.2"; chr11 rmsk exon 107250831 107252217 5503 - . gene_id "MER4B_11q22.3b"; transcript_id "MER4B_11q22.3b"; locus "MER4B_11q22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0320"; repClass "LTR"; repEnd "5440"; repFamily "ERV1"; repLeft "4094"; repStart "-1318"; chr11 rmsk exon 107253247 107253665 2161 - . gene_id "MER4B_11q22.3b"; transcript_id "MER4B_11q22.3b"; locus "MER4B_11q22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0320"; repClass "LTR"; repEnd "3321"; repFamily "ERV1"; repLeft "2937"; repStart "-3437"; chr11 rmsk exon 107254130 107254269 808 - . gene_id "MER4B_11q22.3b"; transcript_id "MER4B_11q22.3b"; locus "MER4B_11q22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0320"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "2833"; repStart "-3820"; ### MER41_11q22.3b ### chr11 rmsk gene 107255430 107256635 . - . gene_id "MER41_11q22.3b"; transcript_id "MER41_11q22.3b"; locus "MER41_11q22.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0380"; model_cov "1404"; model_pct "23.6"; chr11 rmsk exon 107255430 107255573 2035 - . gene_id "MER41_11q22.3b"; transcript_id "MER41_11q22.3b"; locus "MER41_11q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0380"; repClass "LTR"; repEnd "2390"; repFamily "ERV1"; repLeft "2303"; repStart "-3556"; chr11 rmsk exon 107255878 107256635 2035 - . gene_id "MER41_11q22.3b"; transcript_id "MER41_11q22.3b"; locus "MER41_11q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0380"; repClass "LTR"; repEnd "2302"; repFamily "ERV1"; repLeft "985"; repStart "-3644"; ### ERVLE_11q22.3f ### chr11 rmsk gene 107358898 107359975 . + . gene_id "ERVLE_11q22.3f"; transcript_id "ERVLE_11q22.3f"; locus "ERVLE_11q22.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2602"; model_cov "1066"; model_pct "18.8"; chr11 rmsk exon 107358898 107359003 471 + . gene_id "ERVLE_11q22.3f"; transcript_id "ERVLE_11q22.3f"; locus "ERVLE_11q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2602"; repClass "LTR"; repEnd "3924"; repFamily "ERVL"; repLeft "-1743"; repStart "3801"; chr11 rmsk exon 107359020 107359630 2110 + . gene_id "ERVLE_11q22.3f"; transcript_id "ERVLE_11q22.3f"; locus "ERVLE_11q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2602"; repClass "LTR"; repEnd "4809"; repFamily "ERVL"; repLeft "-858"; repStart "4079"; chr11 rmsk exon 107359776 107359975 2110 + . gene_id "ERVLE_11q22.3f"; transcript_id "ERVLE_11q22.3f"; locus "ERVLE_11q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2602"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-644"; repStart "4810"; ### ERVLB4_11q22.3c ### chr11 rmsk gene 107490869 107491959 . - . gene_id "ERVLB4_11q22.3c"; transcript_id "ERVLB4_11q22.3c"; locus "ERVLB4_11q22.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1223"; model_cov "1079"; model_pct "18.9"; chr11 rmsk exon 107490869 107491959 5409 - . gene_id "ERVLB4_11q22.3c"; transcript_id "ERVLB4_11q22.3c"; locus "ERVLB4_11q22.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1223"; repClass "LTR"; repEnd "2417"; repFamily "ERVL"; repLeft "1338"; repStart "-3297"; ### ERVLB4_11q22.3d ### chr11 rmsk gene 107953496 107954632 . - . gene_id "ERVLB4_11q22.3d"; transcript_id "ERVLB4_11q22.3d"; locus "ERVLB4_11q22.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1224"; model_cov "1135"; model_pct "19.9"; chr11 rmsk exon 107953496 107954068 1361 - . gene_id "ERVLB4_11q22.3d"; transcript_id "ERVLB4_11q22.3d"; locus "ERVLB4_11q22.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1224"; repClass "LTR"; repEnd "4978"; repFamily "ERVL"; repLeft "4403"; repStart "-736"; chr11 rmsk exon 107954127 107954380 313 - . gene_id "ERVLB4_11q22.3d"; transcript_id "ERVLB4_11q22.3d"; locus "ERVLB4_11q22.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1224"; repClass "LTR"; repEnd "4342"; repFamily "ERVL"; repLeft "4030"; repStart "-1372"; chr11 rmsk exon 107954401 107954632 260 - . gene_id "ERVLB4_11q22.3d"; transcript_id "ERVLB4_11q22.3d"; locus "ERVLB4_11q22.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1224"; repClass "LTR"; repEnd "4228"; repFamily "ERVL"; repLeft "3980"; repStart "-1486"; ### ERVLE_11q22.3g ### chr11 rmsk gene 107954623 107956036 . - . gene_id "ERVLE_11q22.3g"; transcript_id "ERVLE_11q22.3g"; locus "ERVLE_11q22.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2603"; model_cov "706"; model_pct "12.5"; chr11 rmsk exon 107954623 107954721 386 - . gene_id "ERVLE_11q22.3g"; transcript_id "ERVLE_11q22.3g"; locus "ERVLE_11q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2603"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3501"; repStart "-2055"; chr11 rmsk exon 107954834 107954987 1298 - . gene_id "ERVLE_11q22.3g"; transcript_id "ERVLE_11q22.3g"; locus "ERVLE_11q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2603"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "3199"; repStart "-2317"; chr11 rmsk exon 107955297 107955569 1298 - . gene_id "ERVLE_11q22.3g"; transcript_id "ERVLE_11q22.3g"; locus "ERVLE_11q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2603"; repClass "LTR"; repEnd "3198"; repFamily "ERVL"; repLeft "2911"; repStart "-2469"; chr11 rmsk exon 107955873 107956036 1298 - . gene_id "ERVLE_11q22.3g"; transcript_id "ERVLE_11q22.3g"; locus "ERVLE_11q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2603"; repClass "LTR"; repEnd "2910"; repFamily "ERVL"; repLeft "2753"; repStart "-2757"; ### ERVLE_11q22.3h ### chr11 rmsk gene 107973286 107974465 . - . gene_id "ERVLE_11q22.3h"; transcript_id "ERVLE_11q22.3h"; locus "ERVLE_11q22.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2604"; model_cov "636"; model_pct "11.2"; chr11 rmsk exon 107973286 107973784 2211 - . gene_id "ERVLE_11q22.3h"; transcript_id "ERVLE_11q22.3h"; locus "ERVLE_11q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2604"; repClass "LTR"; repEnd "4719"; repFamily "ERVL"; repLeft "4211"; repStart "-948"; chr11 rmsk exon 107974338 107974465 2211 - . gene_id "ERVLE_11q22.3h"; transcript_id "ERVLE_11q22.3h"; locus "ERVLE_11q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2604"; repClass "LTR"; repEnd "4210"; repFamily "ERVL"; repLeft "4082"; repStart "-1457"; ### HERVL_11q22.3d ### chr11 rmsk gene 107977838 107986311 . + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0932"; model_cov "5659"; model_pct "100.0"; chr11 rmsk exon 107977838 107978293 3206 + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0932"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 107978294 107981052 22498 + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0932"; repClass "LTR"; repEnd "2783"; repFamily "ERVL"; repLeft "-2871"; repStart "1"; chr11 rmsk exon 107983119 107985675 23366 + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0932"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "-300"; repStart "2776"; chr11 rmsk exon 107985966 107986260 23366 + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0932"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5355"; chr11 rmsk exon 107986261 107986311 448 + . gene_id "HERVL_11q22.3d"; transcript_id "HERVL_11q22.3d"; locus "HERVL_11q22.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0932"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "-393"; repStart "1"; ### HERVW_11q22.3 ### chr11 rmsk gene 107981085 107983117 . - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0219"; model_cov "1719"; model_pct "19.9"; chr11 rmsk exon 107981085 107981410 2815 - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0219"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr11 rmsk exon 107981411 107981702 2370 - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0219"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr11 rmsk exon 107981693 107981731 289 - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0219"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr11 rmsk exon 107981725 107982360 4756 - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0219"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5364"; repStart "-2607"; chr11 rmsk exon 107982378 107983117 6170 - . gene_id "HERVW_11q22.3"; transcript_id "HERVW_11q22.3"; locus "HERVW_11q22.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0219"; repClass "LTR"; repEnd "5403"; repFamily "ERV1"; repLeft "4668"; repStart "-3223"; ### ERVLE_11q22.3i ### chr11 rmsk gene 108379990 108381428 . + . gene_id "ERVLE_11q22.3i"; transcript_id "ERVLE_11q22.3i"; locus "ERVLE_11q22.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2605"; model_cov "1476"; model_pct "26.0"; chr11 rmsk exon 108379990 108381428 2248 + . gene_id "ERVLE_11q22.3i"; transcript_id "ERVLE_11q22.3i"; locus "ERVLE_11q22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2605"; repClass "LTR"; repEnd "4891"; repFamily "ERVL"; repLeft "-776"; repStart "3415"; ### ERVLE_11q22.3j ### chr11 rmsk gene 108398625 108402412 . - . gene_id "ERVLE_11q22.3j"; transcript_id "ERVLE_11q22.3j"; locus "ERVLE_11q22.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2606"; model_cov "3203"; model_pct "56.5"; chr11 rmsk exon 108398625 108400678 3821 - . gene_id "ERVLE_11q22.3j"; transcript_id "ERVLE_11q22.3j"; locus "ERVLE_11q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2606"; repClass "LTR"; repEnd "4654"; repFamily "ERVL"; repLeft "2396"; repStart "-1013"; chr11 rmsk exon 108400678 108400824 582 - . gene_id "ERVLE_11q22.3j"; transcript_id "ERVLE_11q22.3j"; locus "ERVLE_11q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2606"; repClass "LTR"; repEnd "1439"; repFamily "ERVL"; repLeft "1300"; repStart "-4228"; chr11 rmsk exon 108401134 108401296 582 - . gene_id "ERVLE_11q22.3j"; transcript_id "ERVLE_11q22.3j"; locus "ERVLE_11q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2606"; repClass "LTR"; repEnd "1299"; repFamily "ERVL"; repLeft "1146"; repStart "-4368"; chr11 rmsk exon 108401794 108402412 829 - . gene_id "ERVLE_11q22.3j"; transcript_id "ERVLE_11q22.3j"; locus "ERVLE_11q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2606"; repClass "LTR"; repEnd "1148"; repFamily "ERVL"; repLeft "495"; repStart "-4519"; ### ERVLE_11q22.3k ### chr11 rmsk gene 108433801 108436597 . + . gene_id "ERVLE_11q22.3k"; transcript_id "ERVLE_11q22.3k"; locus "ERVLE_11q22.3k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2608"; model_cov "1942"; model_pct "34.3"; chr11 rmsk exon 108433801 108434224 7555 + . gene_id "ERVLE_11q22.3k"; transcript_id "ERVLE_11q22.3k"; locus "ERVLE_11q22.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2608"; repClass "LTR"; repEnd "4086"; repFamily "ERVL"; repLeft "-1581"; repStart "3659"; chr11 rmsk exon 108434520 108435812 7555 + . gene_id "ERVLE_11q22.3k"; transcript_id "ERVLE_11q22.3k"; locus "ERVLE_11q22.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2608"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-272"; repStart "4087"; chr11 rmsk exon 108436364 108436474 7555 + . gene_id "ERVLE_11q22.3k"; transcript_id "ERVLE_11q22.3k"; locus "ERVLE_11q22.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2608"; repClass "LTR"; repEnd "5507"; repFamily "ERVL"; repLeft "-160"; repStart "5396"; chr11 rmsk exon 108436507 108436597 513 + . gene_id "ERVLE_11q22.3k"; transcript_id "ERVLE_11q22.3k"; locus "ERVLE_11q22.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2608"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5571"; ### HERVL_11q22.3e ### chr11 rmsk gene 109287432 109288840 . + . gene_id "HERVL_11q22.3e"; transcript_id "HERVL_11q22.3e"; locus "HERVL_11q22.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0933"; model_cov "893"; model_pct "15.8"; chr11 rmsk exon 109287432 109288308 6220 + . gene_id "HERVL_11q22.3e"; transcript_id "HERVL_11q22.3e"; locus "HERVL_11q22.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0933"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4761"; chr11 rmsk exon 109288309 109288840 2022 + . gene_id "HERVL_11q22.3e"; transcript_id "HERVL_11q22.3e"; locus "HERVL_11q22.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0933"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_11q22.3e ### chr11 rmsk gene 109318778 109320892 . + . gene_id "ERV316A3_11q22.3e"; transcript_id "ERV316A3_11q22.3e"; locus "ERV316A3_11q22.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2012"; model_cov "1732"; model_pct "33.1"; chr11 rmsk exon 109318778 109320479 3744 + . gene_id "ERV316A3_11q22.3e"; transcript_id "ERV316A3_11q22.3e"; locus "ERV316A3_11q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2012"; repClass "LTR"; repEnd "5200"; repFamily "ERVL"; repLeft "-26"; repStart "3468"; chr11 rmsk exon 109320518 109320892 781 + . gene_id "ERV316A3_11q22.3e"; transcript_id "ERV316A3_11q22.3e"; locus "ERV316A3_11q22.3e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2012"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "19"; ### HERVL_11q22.3f ### chr11 rmsk gene 109495801 109503010 . - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0934"; model_cov "5652"; model_pct "100.0"; chr11 rmsk exon 109495801 109495879 3148 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "388"; repStart "0"; chr11 rmsk exon 109495935 109496322 3148 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "1"; repStart "-57"; chr11 rmsk exon 109496323 109500000 29070 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1960"; repStart "0"; chr11 rmsk exon 109500001 109501944 15035 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "1959"; repFamily "ERVL"; repLeft "1"; repStart "-3695"; chr11 rmsk exon 109501945 109502012 302 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "376"; repStart "0"; chr11 rmsk exon 109502599 109503010 2998 - . gene_id "HERVL_11q22.3f"; transcript_id "HERVL_11q22.3f"; locus "HERVL_11q22.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0934"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "-30"; ### HERVL_11q22.3g ### chr11 rmsk gene 109961538 109968249 . + . gene_id "HERVL_11q22.3g"; transcript_id "HERVL_11q22.3g"; locus "HERVL_11q22.3g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0935"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 109961538 109962086 1956 + . gene_id "HERVL_11q22.3g"; transcript_id "HERVL_11q22.3g"; locus "HERVL_11q22.3g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0935"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr11 rmsk exon 109962087 109967674 35871 + . gene_id "HERVL_11q22.3g"; transcript_id "HERVL_11q22.3g"; locus "HERVL_11q22.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0935"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 109967675 109968249 1721 + . gene_id "HERVL_11q22.3g"; transcript_id "HERVL_11q22.3g"; locus "HERVL_11q22.3g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0935"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLE_11q22.3l ### chr11 rmsk gene 110331576 110332686 . + . gene_id "ERVLE_11q22.3l"; transcript_id "ERVLE_11q22.3l"; locus "ERVLE_11q22.3l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2611"; model_cov "797"; model_pct "14.1"; chr11 rmsk exon 110331576 110332074 1604 + . gene_id "ERVLE_11q22.3l"; transcript_id "ERVLE_11q22.3l"; locus "ERVLE_11q22.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2611"; repClass "LTR"; repEnd "946"; repFamily "ERVL"; repLeft "-4721"; repStart "401"; chr11 rmsk exon 110332424 110332686 1604 + . gene_id "ERVLE_11q22.3l"; transcript_id "ERVLE_11q22.3l"; locus "ERVLE_11q22.3l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2611"; repClass "LTR"; repEnd "1199"; repFamily "ERVL"; repLeft "-4468"; repStart "947"; ### HML3_11q22.3 ### chr11 rmsk gene 110396219 110399788 . + . gene_id "HML3_11q22.3"; transcript_id "HML3_11q22.3"; locus "HML3_11q22.3"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0168"; model_cov "3074"; model_pct "51.1"; chr11 rmsk exon 110396219 110396731 4440 + . gene_id "HML3_11q22.3"; transcript_id "HML3_11q22.3"; locus "HML3_11q22.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0168"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 110396732 110399510 23157 + . gene_id "HML3_11q22.3"; transcript_id "HML3_11q22.3"; locus "HML3_11q22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0168"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr11 rmsk exon 110399511 110399788 2240 + . gene_id "HML3_11q22.3"; transcript_id "HML3_11q22.3"; locus "HML3_11q22.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0168"; repClass "LTR"; repEnd "4000"; repFamily "ERVK"; repLeft "-2021"; repStart "3723"; ### HERV9_11q22.3 ### chr11 rmsk gene 110399819 110407144 . + . gene_id "HERV9_11q22.3"; transcript_id "HERV9_11q22.3"; locus "HERV9_11q22.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0136"; model_cov "6648"; model_pct "78.8"; chr11 rmsk exon 110399819 110399974 1058 + . gene_id "HERV9_11q22.3"; transcript_id "HERV9_11q22.3"; locus "HERV9_11q22.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0136"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "407"; chr11 rmsk exon 110399975 110404847 33610 + . gene_id "HERV9_11q22.3"; transcript_id "HERV9_11q22.3"; locus "HERV9_11q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0136"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-3407"; repStart "29"; chr11 rmsk exon 110404840 110406480 13596 + . gene_id "HERV9_11q22.3"; transcript_id "HERV9_11q22.3"; locus "HERV9_11q22.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0136"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6788"; chr11 rmsk exon 110406481 110407144 5334 + . gene_id "HERV9_11q22.3"; transcript_id "HERV9_11q22.3"; locus "HERV9_11q22.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0136"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_11q22.3 ### chr11 rmsk gene 110417255 110427689 . + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0153"; model_cov "8265"; model_pct "99.9"; chr11 rmsk exon 110417255 110417291 241 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "557"; chr11 rmsk exon 110417292 110418954 60050 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "1762"; repFamily "ERV1"; repLeft "-6508"; repStart "1"; chr11 rmsk exon 110419256 110419703 60050 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "2199"; repFamily "ERV1"; repLeft "-6071"; repStart "1763"; chr11 rmsk exon 110420020 110421366 60050 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "3517"; repFamily "ERV1"; repLeft "-4753"; repStart "2200"; chr11 rmsk exon 110422437 110427065 60050 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "8269"; repFamily "ERV1"; repLeft "-1"; repStart "3518"; chr11 rmsk exon 110427066 110427689 4190 + . gene_id "PRIMA4_11q22.3"; transcript_id "PRIMA4_11q22.3"; locus "PRIMA4_11q22.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0153"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q23.1a ### chr11 rmsk gene 110737641 110740628 . - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2014"; model_cov "2612"; model_pct "50.0"; chr11 rmsk exon 110737641 110738071 1272 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chr11 rmsk exon 110738129 110738442 924 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "5166"; repFamily "ERVL"; repLeft "4835"; repStart "-60"; chr11 rmsk exon 110738477 110739098 1675 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "3760"; repFamily "ERVL"; repLeft "3099"; repStart "-1466"; chr11 rmsk exon 110739143 110739230 277 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "3280"; repFamily "ERVL"; repLeft "3193"; repStart "-1946"; chr11 rmsk exon 110739280 110740495 3260 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "2838"; repFamily "ERVL"; repLeft "1379"; repStart "-2388"; chr11 rmsk exon 110740551 110740628 313 - . gene_id "ERV316A3_11q23.1a"; transcript_id "ERV316A3_11q23.1a"; locus "ERV316A3_11q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2014"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "1502"; repStart "-3650"; ### ERV316A3_11q23.1b ### chr11 rmsk gene 110740821 110742055 . - . gene_id "ERV316A3_11q23.1b"; transcript_id "ERV316A3_11q23.1b"; locus "ERV316A3_11q23.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2015"; model_cov "764"; model_pct "14.6"; chr11 rmsk exon 110740821 110741140 1268 - . gene_id "ERV316A3_11q23.1b"; transcript_id "ERV316A3_11q23.1b"; locus "ERV316A3_11q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2015"; repClass "LTR"; repEnd "1761"; repFamily "ERVL"; repLeft "1440"; repStart "-3465"; chr11 rmsk exon 110741494 110741670 1268 - . gene_id "ERV316A3_11q23.1b"; transcript_id "ERV316A3_11q23.1b"; locus "ERV316A3_11q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2015"; repClass "LTR"; repEnd "1439"; repFamily "ERVL"; repLeft "1262"; repStart "-3787"; chr11 rmsk exon 110741668 110741766 370 - . gene_id "ERV316A3_11q23.1b"; transcript_id "ERV316A3_11q23.1b"; locus "ERV316A3_11q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2015"; repClass "LTR"; repEnd "777"; repFamily "ERVL"; repLeft "686"; repStart "-4449"; chr11 rmsk exon 110741885 110742055 414 - . gene_id "ERV316A3_11q23.1b"; transcript_id "ERV316A3_11q23.1b"; locus "ERV316A3_11q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2015"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "336"; repStart "-4715"; ### ERV316A3_11q23.1c ### chr11 rmsk gene 111037246 111038152 . - . gene_id "ERV316A3_11q23.1c"; transcript_id "ERV316A3_11q23.1c"; locus "ERV316A3_11q23.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2016"; model_cov "903"; model_pct "17.3"; chr11 rmsk exon 111037246 111038152 1761 - . gene_id "ERV316A3_11q23.1c"; transcript_id "ERV316A3_11q23.1c"; locus "ERV316A3_11q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2016"; repClass "LTR"; repEnd "4332"; repFamily "ERVL"; repLeft "3429"; repStart "-894"; ### ERVLE_11q23.1 ### chr11 rmsk gene 111038239 111038910 . + . gene_id "ERVLE_11q23.1"; transcript_id "ERVLE_11q23.1"; locus "ERVLE_11q23.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2614"; model_cov "683"; model_pct "12.1"; chr11 rmsk exon 111038239 111038910 1034 + . gene_id "ERVLE_11q23.1"; transcript_id "ERVLE_11q23.1"; locus "ERVLE_11q23.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2614"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "-474"; repStart "4510"; ### HERVH_11q23.1 ### chr11 rmsk gene 111052089 111056109 . + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0892"; model_cov "3596"; model_pct "46.6"; chr11 rmsk exon 111052089 111053598 10056 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1520"; chr11 rmsk exon 111053585 111054439 6404 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr11 rmsk exon 111054442 111055103 4444 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 111055105 111055320 1358 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 111055319 111055697 2411 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 111055699 111056109 2935 + . gene_id "HERVH_11q23.1"; transcript_id "HERVH_11q23.1"; locus "HERVH_11q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0892"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### ERV316A3_11q23.1d ### chr11 rmsk gene 111545120 111548379 . - . gene_id "ERV316A3_11q23.1d"; transcript_id "ERV316A3_11q23.1d"; locus "ERV316A3_11q23.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2017"; model_cov "3271"; model_pct "62.6"; chr11 rmsk exon 111545120 111545832 2373 - . gene_id "ERV316A3_11q23.1d"; transcript_id "ERV316A3_11q23.1d"; locus "ERV316A3_11q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2017"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4472"; repStart "0"; chr11 rmsk exon 111545853 111548379 6999 - . gene_id "ERV316A3_11q23.1d"; transcript_id "ERV316A3_11q23.1d"; locus "ERV316A3_11q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2017"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "1627"; repStart "-1082"; ### ERV316A3_11q23.2 ### chr11 rmsk gene 112774533 112776204 . - . gene_id "ERV316A3_11q23.2"; transcript_id "ERV316A3_11q23.2"; locus "ERV316A3_11q23.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2019"; model_cov "806"; model_pct "15.4"; chr11 rmsk exon 112774533 112774692 358 - . gene_id "ERV316A3_11q23.2"; transcript_id "ERV316A3_11q23.2"; locus "ERV316A3_11q23.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2019"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "227"; repStart "-22"; chr11 rmsk exon 112774850 112775032 2453 - . gene_id "ERV316A3_11q23.2"; transcript_id "ERV316A3_11q23.2"; locus "ERV316A3_11q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2019"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5005"; repStart "0"; chr11 rmsk exon 112775400 112775622 2453 - . gene_id "ERV316A3_11q23.2"; transcript_id "ERV316A3_11q23.2"; locus "ERV316A3_11q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2019"; repClass "LTR"; repEnd "5004"; repFamily "ERVL"; repLeft "4788"; repStart "-222"; chr11 rmsk exon 112775882 112776204 2453 - . gene_id "ERV316A3_11q23.2"; transcript_id "ERV316A3_11q23.2"; locus "ERV316A3_11q23.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2019"; repClass "LTR"; repEnd "4787"; repFamily "ERVL"; repLeft "4418"; repStart "-439"; ### HML6_11q23.2 ### chr11 rmsk gene 112924628 112930083 . - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0058"; model_cov "4279"; model_pct "59.4"; chr11 rmsk exon 112924628 112925049 2939 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr11 rmsk exon 112925050 112926033 7432 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "6222"; repStart "0"; chr11 rmsk exon 112926034 112926565 3625 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "5308"; repFamily "ERVK"; repLeft "4772"; repStart "-1894"; chr11 rmsk exon 112926909 112927049 763 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "3631"; repFamily "ERVK"; repLeft "3495"; repStart "-3571"; chr11 rmsk exon 112927034 112929644 17052 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "2635"; repFamily "ERVK"; repLeft "8"; repStart "-4567"; chr11 rmsk exon 112929645 112930083 3066 - . gene_id "HML6_11q23.2"; transcript_id "HML6_11q23.2"; locus "HML6_11q23.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0058"; repClass "LTR"; repEnd "468"; repFamily "ERVK"; repLeft "1"; repStart "-16"; ### ERVLB4_11q23.2 ### chr11 rmsk gene 113450524 113451146 . + . gene_id "ERVLB4_11q23.2"; transcript_id "ERVLB4_11q23.2"; locus "ERVLB4_11q23.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1225"; model_cov "636"; model_pct "11.1"; chr11 rmsk exon 113450524 113451146 3237 + . gene_id "ERVLB4_11q23.2"; transcript_id "ERVLB4_11q23.2"; locus "ERVLB4_11q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1225"; repClass "LTR"; repEnd "2165"; repFamily "ERVL"; repLeft "-3549"; repStart "1529"; ### HERVL_11q23.2 ### chr11 rmsk gene 113581951 113586158 . + . gene_id "HERVL_11q23.2"; transcript_id "HERVL_11q23.2"; locus "HERVL_11q23.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0936"; model_cov "3015"; model_pct "53.3"; chr11 rmsk exon 113581951 113582337 2546 + . gene_id "HERVL_11q23.2"; transcript_id "HERVL_11q23.2"; locus "HERVL_11q23.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0936"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-35"; repStart "1"; chr11 rmsk exon 113582738 113582896 1382 + . gene_id "HERVL_11q23.2"; transcript_id "HERVL_11q23.2"; locus "HERVL_11q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0936"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "-5495"; repStart "1"; chr11 rmsk exon 113582898 113585748 22739 + . gene_id "HERVL_11q23.2"; transcript_id "HERVL_11q23.2"; locus "HERVL_11q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0936"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2797"; chr11 rmsk exon 113585754 113586158 2457 + . gene_id "HERVL_11q23.2"; transcript_id "HERVL_11q23.2"; locus "HERVL_11q23.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0936"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "20"; ### HERVW_11q23.2 ### chr11 rmsk gene 114347204 114349692 . - . gene_id "HERVW_11q23.2"; transcript_id "HERVW_11q23.2"; locus "HERVW_11q23.2"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0220"; model_cov "2490"; model_pct "28.9"; chr11 rmsk exon 114347204 114347909 3127 - . gene_id "HERVW_11q23.2"; transcript_id "HERVW_11q23.2"; locus "HERVW_11q23.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0220"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "7910"; repStart "-4"; chr11 rmsk exon 114347915 114349692 10065 - . gene_id "HERVW_11q23.2"; transcript_id "HERVW_11q23.2"; locus "HERVW_11q23.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0220"; repClass "LTR"; repEnd "4259"; repFamily "ERV1"; repLeft "2481"; repStart "-4367"; ### HUERSP3_11q23.2 ### chr11 rmsk gene 114585663 114591921 . + . gene_id "HUERSP3_11q23.2"; transcript_id "HUERSP3_11q23.2"; locus "HUERSP3_11q23.2"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0145"; model_cov "5678"; model_pct "63.7"; chr11 rmsk exon 114585663 114586337 4128 + . gene_id "HUERSP3_11q23.2"; transcript_id "HUERSP3_11q23.2"; locus "HUERSP3_11q23.2"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0145"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 114586352 114591710 30547 + . gene_id "HUERSP3_11q23.2"; transcript_id "HUERSP3_11q23.2"; locus "HUERSP3_11q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0145"; repClass "LTR"; repEnd "5506"; repFamily "ERV1"; repLeft "-3413"; repStart "15"; chr11 rmsk exon 114591734 114591921 1317 + . gene_id "HUERSP3_11q23.2"; transcript_id "HUERSP3_11q23.2"; locus "HUERSP3_11q23.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0145"; repClass "LTR"; repEnd "7770"; repFamily "ERV1"; repLeft "-1149"; repStart "7583"; ### ERVLB4_11q23.3a ### chr11 rmsk gene 114648240 114649258 . - . gene_id "ERVLB4_11q23.3a"; transcript_id "ERVLB4_11q23.3a"; locus "ERVLB4_11q23.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1226"; model_cov "608"; model_pct "10.6"; chr11 rmsk exon 114648240 114648618 2047 - . gene_id "ERVLB4_11q23.3a"; transcript_id "ERVLB4_11q23.3a"; locus "ERVLB4_11q23.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1226"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "4"; repStart "-167"; chr11 rmsk exon 114648628 114649258 3094 - . gene_id "ERVLB4_11q23.3a"; transcript_id "ERVLB4_11q23.3a"; locus "ERVLB4_11q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1226"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5097"; repStart "-9"; ### MER4_11q23.3 ### chr11 rmsk gene 114681656 114683299 . - . gene_id "MER4_11q23.3"; transcript_id "MER4_11q23.3"; locus "MER4_11q23.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0558"; model_cov "1656"; model_pct "25.1"; chr11 rmsk exon 114681656 114682757 6889 - . gene_id "MER4_11q23.3"; transcript_id "MER4_11q23.3"; locus "MER4_11q23.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0558"; repClass "LTR"; repEnd "4965"; repFamily "ERV1"; repLeft "3837"; repStart "-1633"; chr11 rmsk exon 114682757 114683299 1927 - . gene_id "MER4_11q23.3"; transcript_id "MER4_11q23.3"; locus "MER4_11q23.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0558"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3153"; repStart "-2917"; ### ERVLB4_11q23.3b ### chr11 rmsk gene 115842603 115847386 . - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1228"; model_cov "2604"; model_pct "45.6"; chr11 rmsk exon 115842603 115842942 618 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "5015"; repStart "-350"; chr11 rmsk exon 115842970 115843079 359 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "5041"; repFamily "ERVL"; repLeft "4932"; repStart "-673"; chr11 rmsk exon 115843401 115843934 1182 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "4755"; repFamily "ERVL"; repLeft "4208"; repStart "-959"; chr11 rmsk exon 115844841 115844953 343 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "3873"; repFamily "ERVL"; repLeft "3749"; repStart "-1841"; chr11 rmsk exon 115844953 115845847 1407 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "2644"; repFamily "ERVL"; repLeft "1725"; repStart "-3070"; chr11 rmsk exon 115846676 115847066 380 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "1222"; repFamily "ERVL"; repLeft "910"; repStart "-4492"; chr11 rmsk exon 115847140 115847386 304 - . gene_id "ERVLB4_11q23.3b"; transcript_id "ERVLB4_11q23.3b"; locus "ERVLB4_11q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1228"; repClass "LTR"; repEnd "683"; repFamily "ERVL"; repLeft "439"; repStart "-5031"; ### ERV316A3_11q23.3a ### chr11 rmsk gene 116090954 116092659 . - . gene_id "ERV316A3_11q23.3a"; transcript_id "ERV316A3_11q23.3a"; locus "ERV316A3_11q23.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2022"; model_cov "1291"; model_pct "24.7"; chr11 rmsk exon 116090954 116091314 595 - . gene_id "ERV316A3_11q23.3a"; transcript_id "ERV316A3_11q23.3a"; locus "ERV316A3_11q23.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2022"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "-18"; chr11 rmsk exon 116091315 116091589 525 - . gene_id "ERV316A3_11q23.3a"; transcript_id "ERV316A3_11q23.3a"; locus "ERV316A3_11q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2022"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4963"; repStart "0"; chr11 rmsk exon 116091611 116092659 4642 - . gene_id "ERV316A3_11q23.3a"; transcript_id "ERV316A3_11q23.3a"; locus "ERV316A3_11q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2022"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "1852"; repStart "-2346"; ### ERV316A3_11q23.3b ### chr11 rmsk gene 116092688 116094160 . - . gene_id "ERV316A3_11q23.3b"; transcript_id "ERV316A3_11q23.3b"; locus "ERV316A3_11q23.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2023"; model_cov "1494"; model_pct "28.6"; chr11 rmsk exon 116092688 116092982 4642 - . gene_id "ERV316A3_11q23.3b"; transcript_id "ERV316A3_11q23.3b"; locus "ERV316A3_11q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2023"; repClass "LTR"; repEnd "2880"; repFamily "ERVL"; repLeft "2590"; repStart "-2346"; chr11 rmsk exon 116093022 116094160 4642 - . gene_id "ERV316A3_11q23.3b"; transcript_id "ERV316A3_11q23.3b"; locus "ERV316A3_11q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2023"; repClass "LTR"; repEnd "1560"; repFamily "ERVL"; repLeft "356"; repStart "-3666"; ### HUERSP2_11q23.3 ### chr11 rmsk gene 116144373 116148397 . + . gene_id "HUERSP2_11q23.3"; transcript_id "HUERSP2_11q23.3"; locus "HUERSP2_11q23.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0091"; model_cov "2344"; model_pct "75.9"; chr11 rmsk exon 116144373 116145242 5601 + . gene_id "HUERSP2_11q23.3"; transcript_id "HUERSP2_11q23.3"; locus "HUERSP2_11q23.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0091"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 116145305 116147576 13364 + . gene_id "HUERSP2_11q23.3"; transcript_id "HUERSP2_11q23.3"; locus "HUERSP2_11q23.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0091"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "744"; chr11 rmsk exon 116147577 116148397 5073 + . gene_id "HUERSP2_11q23.3"; transcript_id "HUERSP2_11q23.3"; locus "HUERSP2_11q23.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0091"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_11q23.3c ### chr11 rmsk gene 116290787 116295715 . + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1229"; model_cov "3142"; model_pct "55.0"; chr11 rmsk exon 116290787 116291291 8264 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "947"; repFamily "ERVL"; repLeft "-4767"; repStart "390"; chr11 rmsk exon 116291587 116291711 8264 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "1067"; repFamily "ERVL"; repLeft "-4647"; repStart "948"; chr11 rmsk exon 116292058 116292302 8264 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "-4416"; repStart "1068"; chr11 rmsk exon 116292667 116293673 8264 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "2302"; repFamily "ERVL"; repLeft "-3412"; repStart "1299"; chr11 rmsk exon 116294168 116294288 715 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "2413"; repFamily "ERVL"; repLeft "-3301"; repStart "2285"; chr11 rmsk exon 116294283 116295310 4298 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "-3"; repStart "4606"; chr11 rmsk exon 116295313 116295715 1370 + . gene_id "ERVLB4_11q23.3c"; transcript_id "ERVLB4_11q23.3c"; locus "ERVLB4_11q23.3c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1229"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_11q23.3a ### chr11 rmsk gene 116295729 116302481 . + . gene_id "ERVLE_11q23.3a"; transcript_id "ERVLE_11q23.3a"; locus "ERVLE_11q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2617"; model_cov "3249"; model_pct "57.3"; chr11 rmsk exon 116295729 116296123 1799 + . gene_id "ERVLE_11q23.3a"; transcript_id "ERVLE_11q23.3a"; locus "ERVLE_11q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2617"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-3857"; repStart "1386"; chr11 rmsk exon 116296650 116297461 1799 + . gene_id "ERVLE_11q23.3a"; transcript_id "ERVLE_11q23.3a"; locus "ERVLE_11q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2617"; repClass "LTR"; repEnd "2669"; repFamily "ERVL"; repLeft "-2998"; repStart "1811"; chr11 rmsk exon 116299649 116299859 709 + . gene_id "ERVLE_11q23.3a"; transcript_id "ERVLE_11q23.3a"; locus "ERVLE_11q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2617"; repClass "LTR"; repEnd "3470"; repFamily "ERVL"; repLeft "-2197"; repStart "3243"; chr11 rmsk exon 116300788 116302481 2879 + . gene_id "ERVLE_11q23.3a"; transcript_id "ERVLE_11q23.3a"; locus "ERVLE_11q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2617"; repClass "LTR"; repEnd "5281"; repFamily "ERVL"; repLeft "-386"; repStart "3541"; ### ERVLE_11q23.3b ### chr11 rmsk gene 116303185 116304473 . + . gene_id "ERVLE_11q23.3b"; transcript_id "ERVLE_11q23.3b"; locus "ERVLE_11q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2618"; model_cov "1279"; model_pct "22.6"; chr11 rmsk exon 116303185 116304218 4607 + . gene_id "ERVLE_11q23.3b"; transcript_id "ERVLE_11q23.3b"; locus "ERVLE_11q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2618"; repClass "LTR"; repEnd "4948"; repFamily "ERVL"; repLeft "-719"; repStart "3902"; chr11 rmsk exon 116304230 116304473 740 + . gene_id "ERVLE_11q23.3b"; transcript_id "ERVLE_11q23.3b"; locus "ERVLE_11q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2618"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-444"; repStart "4990"; ### HERVH_11q23.3a ### chr11 rmsk gene 117810114 117814332 . + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0893"; model_cov "3884"; model_pct "50.4"; chr11 rmsk exon 117810114 117810219 740 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-7396"; repStart "203"; chr11 rmsk exon 117810273 117812670 15984 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "528"; chr11 rmsk exon 117812665 117812812 877 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 117812803 117812950 898 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-4075"; repStart "3492"; chr11 rmsk exon 117812941 117813301 1188 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4744"; chr11 rmsk exon 117813303 117813518 1328 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 117813517 117813896 2440 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 117813897 117814332 2805 + . gene_id "HERVH_11q23.3a"; transcript_id "HERVH_11q23.3a"; locus "HERVH_11q23.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0893"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_11q23.3c ### chr11 rmsk gene 118295226 118302403 . + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2024"; model_cov "4974"; model_pct "95.2"; chr11 rmsk exon 118295226 118295664 1628 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr11 rmsk exon 118295669 118295781 479 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-4869"; repStart "231"; chr11 rmsk exon 118295804 118296165 711 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "-4406"; repStart "418"; chr11 rmsk exon 118296216 118296787 1511 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "1260"; repFamily "ERVL"; repLeft "-3966"; repStart "687"; chr11 rmsk exon 118297474 118297707 1511 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "1525"; repFamily "ERVL"; repLeft "-3701"; repStart "1261"; chr11 rmsk exon 118297896 118298857 6653 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "2685"; repFamily "ERVL"; repLeft "-2541"; repStart "1607"; chr11 rmsk exon 118299171 118300015 6653 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "3537"; repFamily "ERVL"; repLeft "-1689"; repStart "2686"; chr11 rmsk exon 118300324 118301979 6653 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "3538"; chr11 rmsk exon 118301992 118302403 736 + . gene_id "ERV316A3_11q23.3c"; transcript_id "ERV316A3_11q23.3c"; locus "ERV316A3_11q23.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2024"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-1"; repStart "24"; ### MER4B_11q23.3 ### chr11 rmsk gene 118674326 118674864 . - . gene_id "MER4B_11q23.3"; transcript_id "MER4B_11q23.3"; locus "MER4B_11q23.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0322"; model_cov "716"; model_pct "10.6"; chr11 rmsk exon 118674326 118674532 1356 - . gene_id "MER4B_11q23.3"; transcript_id "MER4B_11q23.3"; locus "MER4B_11q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0322"; repClass "LTR"; repEnd "5271"; repFamily "ERV1"; repLeft "4576"; repStart "-1487"; chr11 rmsk exon 118674841 118674864 1356 - . gene_id "MER4B_11q23.3"; transcript_id "MER4B_11q23.3"; locus "MER4B_11q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0322"; repClass "LTR"; repEnd "4573"; repFamily "ERV1"; repLeft "4552"; repStart "-2185"; ### ERVLE_11q23.3c ### chr11 rmsk gene 118707522 118709204 . - . gene_id "ERVLE_11q23.3c"; transcript_id "ERVLE_11q23.3c"; locus "ERVLE_11q23.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2619"; model_cov "802"; model_pct "14.2"; chr11 rmsk exon 118707522 118707688 1330 - . gene_id "ERVLE_11q23.3c"; transcript_id "ERVLE_11q23.3c"; locus "ERVLE_11q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2619"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "5100"; repStart "-385"; chr11 rmsk exon 118708097 118708420 1330 - . gene_id "ERVLE_11q23.3c"; transcript_id "ERVLE_11q23.3c"; locus "ERVLE_11q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2619"; repClass "LTR"; repEnd "5099"; repFamily "ERVL"; repLeft "4760"; repStart "-568"; chr11 rmsk exon 118708885 118709018 1330 - . gene_id "ERVLE_11q23.3c"; transcript_id "ERVLE_11q23.3c"; locus "ERVLE_11q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2619"; repClass "LTR"; repEnd "4759"; repFamily "ERVL"; repLeft "4624"; repStart "-908"; chr11 rmsk exon 118709061 118709204 471 - . gene_id "ERVLE_11q23.3c"; transcript_id "ERVLE_11q23.3c"; locus "ERVLE_11q23.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2619"; repClass "LTR"; repEnd "1991"; repFamily "ERVL"; repLeft "1845"; repStart "-3676"; ### HERVH_11q23.3b ### chr11 rmsk gene 118717034 118721014 . - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0894"; model_cov "3596"; model_pct "46.6"; chr11 rmsk exon 118717034 118717442 2900 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 118717443 118717821 2322 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 118717820 118718023 1332 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5612"; repStart "-1894"; chr11 rmsk exon 118718039 118718701 4264 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 118718704 118719207 3368 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 118719198 118719345 855 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 118719340 118721014 11452 - . gene_id "HERVH_11q23.3b"; transcript_id "HERVH_11q23.3b"; locus "HERVH_11q23.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0894"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1301"; repStart "-4726"; ### HML2_11q23.3 ### chr11 rmsk gene 118721015 118730174 . - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0092"; model_cov "7243"; model_pct "96.1"; chr11 rmsk exon 118721015 118721981 8482 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 118721982 118723687 14138 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0"; chr11 rmsk exon 118723687 118729206 48710 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr11 rmsk exon 118729207 118730174 8460 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_11q23.3c ### chr11 rmsk gene 118730175 118731855 . - . gene_id "HERVH_11q23.3c"; transcript_id "HERVH_11q23.3c"; locus "HERVH_11q23.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0895"; model_cov "1304"; model_pct "16.9"; chr11 rmsk exon 118730175 118731443 8343 - . gene_id "HERVH_11q23.3c"; transcript_id "HERVH_11q23.3c"; locus "HERVH_11q23.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0895"; repClass "LTR"; repEnd "1305"; repFamily "ERV1"; repLeft "1"; repStart "-6408"; chr11 rmsk exon 118731446 118731855 2824 - . gene_id "HERVH_11q23.3c"; transcript_id "HERVH_11q23.3c"; locus "HERVH_11q23.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0895"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### ERVLE_11q23.3d ### chr11 rmsk gene 118740784 118743520 . - . gene_id "ERVLE_11q23.3d"; transcript_id "ERVLE_11q23.3d"; locus "ERVLE_11q23.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2620"; model_cov "2339"; model_pct "41.3"; chr11 rmsk exon 118740784 118741381 1553 - . gene_id "ERVLE_11q23.3d"; transcript_id "ERVLE_11q23.3d"; locus "ERVLE_11q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2620"; repClass "LTR"; repEnd "5408"; repFamily "ERVL"; repLeft "4764"; repStart "-259"; chr11 rmsk exon 118741384 118741524 5832 - . gene_id "ERVLE_11q23.3d"; transcript_id "ERVLE_11q23.3d"; locus "ERVLE_11q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2620"; repClass "LTR"; repEnd "3354"; repFamily "ERVL"; repLeft "3223"; repStart "-2313"; chr11 rmsk exon 118741642 118743011 5832 - . gene_id "ERVLE_11q23.3d"; transcript_id "ERVLE_11q23.3d"; locus "ERVLE_11q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2620"; repClass "LTR"; repEnd "3222"; repFamily "ERVL"; repLeft "1793"; repStart "-2445"; chr11 rmsk exon 118743381 118743520 795 - . gene_id "ERVLE_11q23.3d"; transcript_id "ERVLE_11q23.3d"; locus "ERVLE_11q23.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2620"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "1514"; repStart "-4018"; ### ERVLE_11q23.3e ### chr11 rmsk gene 118843946 118848652 . + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2621"; model_cov "1781"; model_pct "31.4"; chr11 rmsk exon 118843946 118844497 2644 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "-5059"; repStart "17"; chr11 rmsk exon 118845389 118845657 2644 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "894"; repFamily "ERVL"; repLeft "-4773"; repStart "609"; chr11 rmsk exon 118845763 118845856 324 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "975"; repFamily "ERVL"; repLeft "-4692"; repStart "889"; chr11 rmsk exon 118846167 118846192 324 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "1000"; repFamily "ERVL"; repLeft "-4667"; repStart "976"; chr11 rmsk exon 118847527 118847996 3212 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "2090"; repFamily "ERVL"; repLeft "-3577"; repStart "1655"; chr11 rmsk exon 118848296 118848652 3212 + . gene_id "ERVLE_11q23.3e"; transcript_id "ERVLE_11q23.3e"; locus "ERVLE_11q23.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2621"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3216"; repStart "2091"; ### MER41_11q23.3 ### chr11 rmsk gene 118866008 118867768 . + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0381"; model_cov "1065"; model_pct "17.9"; chr11 rmsk exon 118866008 118866033 1016 + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0381"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "-125"; repStart "482"; chr11 rmsk exon 118866345 118866466 1016 + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0381"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "-2"; repStart "510"; chr11 rmsk exon 118866468 118866552 526 + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0381"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chr11 rmsk exon 118866548 118867471 6319 + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0381"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "-360"; repStart "4639"; chr11 rmsk exon 118867731 118867768 6319 + . gene_id "MER41_11q23.3"; transcript_id "MER41_11q23.3"; locus "MER41_11q23.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0381"; repClass "LTR"; repEnd "5618"; repFamily "ERV1"; repLeft "-328"; repStart "5587"; ### ERV316A3_11q23.3d ### chr11 rmsk gene 119631783 119634896 . + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2025"; model_cov "1835"; model_pct "35.1"; chr11 rmsk exon 119631783 119632284 1053 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "528"; repFamily "ERVL"; repLeft "-4698"; repStart "3"; chr11 rmsk exon 119632416 119632725 1124 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "-4186"; repStart "721"; chr11 rmsk exon 119632799 119633010 812 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "2650"; repFamily "ERVL"; repLeft "-2576"; repStart "2431"; chr11 rmsk exon 119633341 119633384 812 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "2693"; repFamily "ERVL"; repLeft "-2533"; repStart "2651"; chr11 rmsk exon 119633359 119633544 1172 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "-682"; repStart "4365"; chr11 rmsk exon 119633859 119634391 1172 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "-130"; repStart "4545"; chr11 rmsk exon 119634502 119634896 1280 + . gene_id "ERV316A3_11q23.3d"; transcript_id "ERV316A3_11q23.3d"; locus "ERV316A3_11q23.3d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2025"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-6"; repStart "37"; ### ERV316A3_11q23.3e ### chr11 rmsk gene 119925709 119932163 . - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2026"; model_cov "4292"; model_pct "82.1"; chr11 rmsk exon 119925709 119926202 1005 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "63"; repStart "0"; chr11 rmsk exon 119926707 119926876 6422 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "4940"; repStart "-105"; chr11 rmsk exon 119927147 119930865 6422 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "4939"; repFamily "ERVL"; repLeft "1203"; repStart "-287"; chr11 rmsk exon 119931289 119931457 6422 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "1202"; repFamily "ERVL"; repLeft "1038"; repStart "-4024"; chr11 rmsk exon 119931619 119931821 317 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "-225"; repFamily "ERVL"; repLeft "-436"; repStart "-5451"; chr11 rmsk exon 119931823 119932163 295 - . gene_id "ERV316A3_11q23.3e"; transcript_id "ERV316A3_11q23.3e"; locus "ERV316A3_11q23.3e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2026"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "124"; repStart "0"; ### ERV316A3_11q23.3f ### chr11 rmsk gene 121092973 121099241 . - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2027"; model_cov "4648"; model_pct "88.9"; chr11 rmsk exon 121092973 121093364 1324 - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2027"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "2"; repStart "-16"; chr11 rmsk exon 121093366 121096586 9453 - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2027"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "2007"; repStart "0"; chr11 rmsk exon 121096991 121097394 3718 - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2027"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "1577"; repStart "-3252"; chr11 rmsk exon 121097720 121098768 3718 - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2027"; repClass "LTR"; repEnd "1576"; repFamily "ERVL"; repLeft "544"; repStart "-3650"; chr11 rmsk exon 121098978 121099241 588 - . gene_id "ERV316A3_11q23.3f"; transcript_id "ERV316A3_11q23.3f"; locus "ERV316A3_11q23.3f"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2027"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "1"; repStart "-140"; ### HML1_11q23.3 ### chr11 rmsk gene 121236524 121240494 . + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0082"; model_cov "2260"; model_pct "37.1"; chr11 rmsk exon 121236524 121236926 1752 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "607"; repFamily "ERVK"; repLeft "-1"; repStart "3"; chr11 rmsk exon 121236928 121237620 5090 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "-5398"; repStart "1"; chr11 rmsk exon 121237655 121238102 3070 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "-3921"; repStart "1704"; chr11 rmsk exon 121239126 121239241 862 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "-1698"; repStart "4277"; chr11 rmsk exon 121239241 121239793 2614 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "-495"; repStart "5011"; chr11 rmsk exon 121239795 121240077 1682 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5715"; chr11 rmsk exon 121240081 121240142 284 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "60"; repFamily "ERVK"; repLeft "-548"; repStart "1"; chr11 rmsk exon 121240140 121240494 1914 + . gene_id "HML1_11q23.3"; transcript_id "HML1_11q23.3"; locus "HML1_11q23.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0082"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "220"; ### HML6_11q23.3 ### chr11 rmsk gene 121282476 121285888 . + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0059"; model_cov "2035"; model_pct "28.3"; chr11 rmsk exon 121282476 121282946 2768 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "498"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr11 rmsk exon 121283251 121283431 572 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "226"; repFamily "ERVK"; repLeft "-6976"; repStart "28"; chr11 rmsk exon 121283492 121283592 340 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "-6563"; repStart "539"; chr11 rmsk exon 121283581 121284533 4635 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-4934"; repStart "1280"; chr11 rmsk exon 121284533 121285273 4351 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "7003"; repFamily "ERVK"; repLeft "-199"; repStart "6308"; chr11 rmsk exon 121285336 121285390 420 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "7120"; repFamily "ERVK"; repLeft "-82"; repStart "7066"; chr11 rmsk exon 121285417 121285888 2837 + . gene_id "HML6_11q23.3"; transcript_id "HML6_11q23.3"; locus "HML6_11q23.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0059"; repClass "LTR"; repEnd "487"; repFamily "ERVK"; repLeft "-12"; repStart "5"; ### ERVLE_11q24.1a ### chr11 rmsk gene 121315682 121316940 . + . gene_id "ERVLE_11q24.1a"; transcript_id "ERVLE_11q24.1a"; locus "ERVLE_11q24.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2625"; model_cov "666"; model_pct "11.8"; chr11 rmsk exon 121315682 121316268 1053 + . gene_id "ERVLE_11q24.1a"; transcript_id "ERVLE_11q24.1a"; locus "ERVLE_11q24.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2625"; repClass "LTR"; repEnd "595"; repFamily "ERVL"; repLeft "-68"; repStart "1"; chr11 rmsk exon 121316292 121316940 2173 + . gene_id "ERVLE_11q24.1a"; transcript_id "ERVLE_11q24.1a"; locus "ERVLE_11q24.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2625"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "-5047"; repStart "-46"; ### PRIMA4_11q24.1 ### chr11 rmsk gene 121369325 121374752 . - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0156"; model_cov "3892"; model_pct "47.1"; chr11 rmsk exon 121369325 121369915 2938 - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0156"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 121369923 121370751 14799 - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0156"; repClass "LTR"; repEnd "8266"; repFamily "ERV1"; repLeft "7438"; repStart "-4"; chr11 rmsk exon 121371141 121372561 14799 - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0156"; repClass "LTR"; repEnd "7437"; repFamily "ERV1"; repLeft "6017"; repStart "-833"; chr11 rmsk exon 121372611 121374163 9643 - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0156"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "1"; repStart "-6625"; chr11 rmsk exon 121374164 121374752 3176 - . gene_id "PRIMA4_11q24.1"; transcript_id "PRIMA4_11q24.1"; locus "PRIMA4_11q24.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0156"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_11q24.1a ### chr11 rmsk gene 121637351 121643560 . - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0896"; model_cov "5425"; model_pct "70.3"; chr11 rmsk exon 121637351 121637801 3630 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 121637802 121638180 2606 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 121638179 121638394 1388 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 121638396 121640122 8251 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr11 rmsk exon 121640113 121640262 991 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 121640242 121643107 16378 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 121643110 121643560 3448 - . gene_id "HERVH_11q24.1a"; transcript_id "HERVH_11q24.1a"; locus "HERVH_11q24.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0896"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_11q24.1 ### chr11 rmsk gene 122009866 122016384 . + . gene_id "HERVL_11q24.1"; transcript_id "HERVL_11q24.1"; locus "HERVL_11q24.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0938"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 122009866 122010303 3026 + . gene_id "HERVL_11q24.1"; transcript_id "HERVL_11q24.1"; locus "HERVL_11q24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0938"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 122010304 122015977 43966 + . gene_id "HERVL_11q24.1"; transcript_id "HERVL_11q24.1"; locus "HERVL_11q24.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0938"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 122015978 122016384 2695 + . gene_id "HERVL_11q24.1"; transcript_id "HERVL_11q24.1"; locus "HERVL_11q24.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0938"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; ### ERV316A3_11q24.1 ### chr11 rmsk gene 122395578 122399222 . + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2029"; model_cov "2060"; model_pct "39.4"; chr11 rmsk exon 122395578 122395697 265 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "1327"; repFamily "ERVL"; repLeft "-3899"; repStart "1208"; chr11 rmsk exon 122395734 122395963 574 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "2877"; repFamily "ERVL"; repLeft "-2349"; repStart "2629"; chr11 rmsk exon 122395983 122396199 333 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "3079"; repFamily "ERVL"; repLeft "-2147"; repStart "2842"; chr11 rmsk exon 122396252 122396416 410 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "-1593"; repStart "3466"; chr11 rmsk exon 122397046 122397367 579 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "3776"; repFamily "ERVL"; repLeft "-1450"; repStart "3430"; chr11 rmsk exon 122397975 122398304 513 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "4099"; repFamily "ERVL"; repLeft "-1127"; repStart "3763"; chr11 rmsk exon 122398305 122398718 841 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "-331"; repStart "4472"; chr11 rmsk exon 122399028 122399222 841 + . gene_id "ERV316A3_11q24.1"; transcript_id "ERV316A3_11q24.1"; locus "ERV316A3_11q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2029"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "-146"; repStart "4896"; ### HERVH_11q24.1b ### chr11 rmsk gene 122546527 122555602 . + . gene_id "HERVH_11q24.1b"; transcript_id "HERVH_11q24.1b"; locus "HERVH_11q24.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0897"; model_cov "7712"; model_pct "100.0"; chr11 rmsk exon 122546527 122547025 3275 + . gene_id "HERVH_11q24.1b"; transcript_id "HERVH_11q24.1b"; locus "HERVH_11q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0897"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 122547028 122555153 29824 + . gene_id "HERVH_11q24.1b"; transcript_id "HERVH_11q24.1b"; locus "HERVH_11q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0897"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 122555154 122555602 3630 + . gene_id "HERVH_11q24.1b"; transcript_id "HERVH_11q24.1b"; locus "HERVH_11q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0897"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP1_11q24.1 ### chr11 rmsk gene 122818447 122822637 . + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0141"; model_cov "1237"; model_pct "19.8"; chr11 rmsk exon 122818447 122819104 2978 + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0141"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "6"; chr11 rmsk exon 122819105 122819358 1509 + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0141"; repClass "LTR"; repEnd "267"; repFamily "ERV1"; repLeft "-5996"; repStart "1"; chr11 rmsk exon 122819424 122820097 3280 + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0141"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "-5171"; repStart "438"; chr11 rmsk exon 122821641 122821950 1585 + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0141"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "5945"; chr11 rmsk exon 122821952 122822637 2561 + . gene_id "HUERSP1_11q24.1"; transcript_id "HUERSP1_11q24.1"; locus "HUERSP1_11q24.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0141"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q24.1c ### chr11 rmsk gene 122824428 122832822 . + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0898"; model_cov "4917"; model_pct "63.7"; chr11 rmsk exon 122824428 122824830 2824 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 122824833 122826569 6690 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "1534"; repFamily "ERV1"; repLeft "-6179"; repStart "1"; chr11 rmsk exon 122829054 122830517 10737 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1525"; chr11 rmsk exon 122830512 122830659 906 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr11 rmsk exon 122830650 122831152 3420 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr11 rmsk exon 122831155 122831817 4495 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 122831819 122832035 1409 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 122832034 122832414 2463 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr11 rmsk exon 122832415 122832822 2847 + . gene_id "HERVH_11q24.1c"; transcript_id "HERVH_11q24.1c"; locus "HERVH_11q24.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0898"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_11q24.1b ### chr11 rmsk gene 123678974 123681289 . + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2626"; model_cov "1267"; model_pct "22.4"; chr11 rmsk exon 123678974 123679047 373 + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2626"; repClass "LTR"; repEnd "621"; repFamily "ERVL"; repLeft "-7"; repStart "549"; chr11 rmsk exon 123679051 123679704 2674 + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2626"; repClass "LTR"; repEnd "630"; repFamily "ERVL"; repLeft "-5037"; repStart "-45"; chr11 rmsk exon 123680012 123680276 1709 + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2626"; repClass "LTR"; repEnd "897"; repFamily "ERVL"; repLeft "-4770"; repStart "631"; chr11 rmsk exon 123680965 123681080 520 + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2626"; repClass "LTR"; repEnd "1075"; repFamily "ERVL"; repLeft "-4592"; repStart "956"; chr11 rmsk exon 123681078 123681289 1097 + . gene_id "ERVLE_11q24.1b"; transcript_id "ERVLE_11q24.1b"; locus "ERVLE_11q24.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2626"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "-3152"; repStart "2308"; ### MER4_11q24.1 ### chr11 rmsk gene 123787888 123794689 . - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0560"; model_cov "5861"; model_pct "88.8"; chr11 rmsk exon 123787888 123788327 2873 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0560"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr11 rmsk exon 123788337 123791020 16582 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3849"; repStart "-2"; chr11 rmsk exon 123791021 123791695 2953 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "3664"; repFamily "ERV1"; repLeft "2948"; repStart "-2934"; chr11 rmsk exon 123791694 123791761 412 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "3512"; repFamily "ERV1"; repLeft "3445"; repStart "-3086"; chr11 rmsk exon 123792002 123793435 7937 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "993"; repStart "-4103"; chr11 rmsk exon 123793505 123793573 284 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "688"; repStart "-5848"; chr11 rmsk exon 123793619 123793703 405 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "-657"; repFamily "ERV1"; repLeft "-739"; repStart "-7255"; chr11 rmsk exon 123793672 123794237 2562 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0560"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr11 rmsk exon 123794241 123794689 3089 - . gene_id "MER4_11q24.1"; transcript_id "MER4_11q24.1"; locus "MER4_11q24.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0560"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_11q24.1d ### chr11 rmsk gene 123865322 123871065 . - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0899"; model_cov "4869"; model_pct "63.1"; chr11 rmsk exon 123865322 123865713 2251 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 123865714 123866090 2117 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 123866091 123866306 1273 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 123866308 123866882 3564 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4575"; repStart "-2564"; chr11 rmsk exon 123866880 123867062 1248 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4488"; repStart "-3043"; chr11 rmsk exon 123867065 123867915 5435 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr11 rmsk exon 123867910 123870142 13838 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "793"; repStart "-4726"; chr11 rmsk exon 123870197 123870663 2860 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr11 rmsk exon 123870666 123871065 2365 - . gene_id "HERVH_11q24.1d"; transcript_id "HERVH_11q24.1d"; locus "HERVH_11q24.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0899"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_11q24.2a ### chr11 rmsk gene 124005046 124006348 . - . gene_id "HERVL_11q24.2a"; transcript_id "HERVL_11q24.2a"; locus "HERVL_11q24.2a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0939"; model_cov "1326"; model_pct "23.5"; chr11 rmsk exon 124005046 124006348 9759 - . gene_id "HERVL_11q24.2a"; transcript_id "HERVL_11q24.2a"; locus "HERVL_11q24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0939"; repClass "LTR"; repEnd "4662"; repFamily "ERVL"; repLeft "3336"; repStart "-992"; ### ERVLE_11q24.2a ### chr11 rmsk gene 124714908 124717588 . + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2627"; model_cov "2223"; model_pct "39.2"; chr11 rmsk exon 124714908 124716158 1328 + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2627"; repClass "LTR"; repEnd "1281"; repFamily "ERVL"; repLeft "-4386"; repStart "4"; chr11 rmsk exon 124716164 124716348 480 + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2627"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "-3547"; repStart "1908"; chr11 rmsk exon 124716522 124716751 753 + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2627"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "-3295"; repStart "2153"; chr11 rmsk exon 124716853 124717057 970 + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2627"; repClass "LTR"; repEnd "2851"; repFamily "ERVL"; repLeft "-2816"; repStart "2557"; chr11 rmsk exon 124717371 124717588 970 + . gene_id "ERVLE_11q24.2a"; transcript_id "ERVLE_11q24.2a"; locus "ERVLE_11q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2627"; repClass "LTR"; repEnd "3073"; repFamily "ERVL"; repLeft "-2594"; repStart "2852"; ### HERVL_11q24.2b ### chr11 rmsk gene 124824461 124826386 . - . gene_id "HERVL_11q24.2b"; transcript_id "HERVL_11q24.2b"; locus "HERVL_11q24.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0940"; model_cov "1408"; model_pct "24.9"; chr11 rmsk exon 124824461 124824984 2545 - . gene_id "HERVL_11q24.2b"; transcript_id "HERVL_11q24.2b"; locus "HERVL_11q24.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0940"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 124824985 124826386 10796 - . gene_id "HERVL_11q24.2b"; transcript_id "HERVL_11q24.2b"; locus "HERVL_11q24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0940"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4246"; repStart "0"; ### HERVL_11q24.2c ### chr11 rmsk gene 124905083 124914030 . - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0941"; model_cov "5636"; model_pct "99.7"; chr11 rmsk exon 124905083 124905151 366 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr11 rmsk exon 124905275 124905305 3079 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "402"; repStart "-39"; chr11 rmsk exon 124905331 124905726 3079 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "1"; repStart "-52"; chr11 rmsk exon 124905727 124909317 28720 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2014"; repStart "0"; chr11 rmsk exon 124911036 124913029 15021 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "2026"; repFamily "ERVL"; repLeft "30"; repStart "-3628"; chr11 rmsk exon 124913623 124914030 3006 - . gene_id "HERVL_11q24.2c"; transcript_id "HERVL_11q24.2c"; locus "HERVL_11q24.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0941"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "1"; repStart "-35"; ### HERVL_11q24.2d ### chr11 rmsk gene 125028850 125035326 . - . gene_id "HERVL_11q24.2d"; transcript_id "HERVL_11q24.2d"; locus "HERVL_11q24.2d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0942"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 125028850 125029294 3307 - . gene_id "HERVL_11q24.2d"; transcript_id "HERVL_11q24.2d"; locus "HERVL_11q24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0942"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 125029295 125034862 43196 - . gene_id "HERVL_11q24.2d"; transcript_id "HERVL_11q24.2d"; locus "HERVL_11q24.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0942"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr11 rmsk exon 125034863 125035326 3183 - . gene_id "HERVL_11q24.2d"; transcript_id "HERVL_11q24.2d"; locus "HERVL_11q24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0942"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-8"; repStart "0"; ### MER4B_11q24.2a ### chr11 rmsk gene 125542655 125543347 . + . gene_id "MER4B_11q24.2a"; transcript_id "MER4B_11q24.2a"; locus "MER4B_11q24.2a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0324"; model_cov "726"; model_pct "10.7"; chr11 rmsk exon 125542655 125543347 3627 + . gene_id "MER4B_11q24.2a"; transcript_id "MER4B_11q24.2a"; locus "MER4B_11q24.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0324"; repClass "LTR"; repEnd "2694"; repFamily "ERV1"; repLeft "-4064"; repStart "1968"; ### HUERSP3B_11q24.2 ### chr11 rmsk gene 125548047 125555868 . - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0096"; model_cov "5455"; model_pct "73.5"; chr11 rmsk exon 125548047 125548146 381 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "512"; repStart "0"; chr11 rmsk exon 125548147 125548696 20345 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "6011"; repFamily "ERV1"; repLeft "5482"; repStart "-1407"; chr11 rmsk exon 125548996 125550280 20345 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "5481"; repFamily "ERV1"; repLeft "4210"; repStart "-1937"; chr11 rmsk exon 125550593 125551737 20345 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "4209"; repFamily "ERV1"; repLeft "3073"; repStart "-3209"; chr11 rmsk exon 125552167 125553314 6271 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "1769"; repStart "-4776"; chr11 rmsk exon 125553312 125554733 10111 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "151"; repFamily "ERV1"; repLeft "-1247"; repStart "-7267"; chr11 rmsk exon 125555032 125555295 10111 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "-1248"; repFamily "ERV1"; repLeft "-1496"; repStart "-8666"; chr11 rmsk exon 125555301 125555868 3561 - . gene_id "HUERSP3B_11q24.2"; transcript_id "HUERSP3B_11q24.2"; locus "HUERSP3B_11q24.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0096"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_11q24.2b ### chr11 rmsk gene 125562851 125564490 . + . gene_id "MER4B_11q24.2b"; transcript_id "MER4B_11q24.2b"; locus "MER4B_11q24.2b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0325"; model_cov "1044"; model_pct "15.4"; chr11 rmsk exon 125562851 125563247 1874 + . gene_id "MER4B_11q24.2b"; transcript_id "MER4B_11q24.2b"; locus "MER4B_11q24.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0325"; repClass "LTR"; repEnd "3097"; repFamily "ERV1"; repLeft "-3661"; repStart "2691"; chr11 rmsk exon 125563551 125563655 4035 + . gene_id "MER4B_11q24.2b"; transcript_id "MER4B_11q24.2b"; locus "MER4B_11q24.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0325"; repClass "LTR"; repEnd "3533"; repFamily "ERV1"; repLeft "-3225"; repStart "3431"; chr11 rmsk exon 125563956 125564490 4035 + . gene_id "MER4B_11q24.2b"; transcript_id "MER4B_11q24.2b"; locus "MER4B_11q24.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0325"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "-2688"; repStart "3534"; ### MER4B_11q24.2c ### chr11 rmsk gene 125564580 125565301 . - . gene_id "MER4B_11q24.2c"; transcript_id "MER4B_11q24.2c"; locus "MER4B_11q24.2c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0326"; model_cov "740"; model_pct "10.9"; chr11 rmsk exon 125564580 125565301 4589 - . gene_id "MER4B_11q24.2c"; transcript_id "MER4B_11q24.2c"; locus "MER4B_11q24.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0326"; repClass "LTR"; repEnd "5192"; repFamily "ERV1"; repLeft "4452"; repStart "-1566"; ### ERVLE_11q24.2b ### chr11 rmsk gene 125751253 125752609 . - . gene_id "ERVLE_11q24.2b"; transcript_id "ERVLE_11q24.2b"; locus "ERVLE_11q24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2629"; model_cov "1442"; model_pct "25.4"; chr11 rmsk exon 125751253 125752239 1412 - . gene_id "ERVLE_11q24.2b"; transcript_id "ERVLE_11q24.2b"; locus "ERVLE_11q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2629"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "4253"; repStart "-365"; chr11 rmsk exon 125752237 125752279 251 - . gene_id "ERVLE_11q24.2b"; transcript_id "ERVLE_11q24.2b"; locus "ERVLE_11q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2629"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "3758"; repStart "-1867"; chr11 rmsk exon 125752295 125752609 552 - . gene_id "ERVLE_11q24.2b"; transcript_id "ERVLE_11q24.2b"; locus "ERVLE_11q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2629"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "3309"; repStart "-2007"; ### ERV316A3_11q24.2 ### chr11 rmsk gene 125770580 125773710 . - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2031"; model_cov "1612"; model_pct "30.8"; chr11 rmsk exon 125770580 125770996 1272 - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2031"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr11 rmsk exon 125771179 125771357 550 - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2031"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "4843"; repStart "-207"; chr11 rmsk exon 125771756 125772734 1106 - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2031"; repClass "LTR"; repEnd "1659"; repFamily "ERVL"; repLeft "638"; repStart "-3567"; chr11 rmsk exon 125772944 125773343 677 - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2031"; repClass "LTR"; repEnd "646"; repFamily "ERVL"; repLeft "231"; repStart "-4580"; chr11 rmsk exon 125773344 125773710 933 - . gene_id "ERV316A3_11q24.2"; transcript_id "ERV316A3_11q24.2"; locus "ERV316A3_11q24.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2031"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "82"; repStart "0"; ### HERVIP10F_11q24.2 ### chr11 rmsk gene 125867226 125872500 . - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0079"; model_cov "4496"; model_pct "58.1"; chr11 rmsk exon 125867226 125867599 2790 - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0079"; repClass "LTR"; repEnd "6783"; repFamily "ERV1"; repLeft "6411"; repStart "-954"; chr11 rmsk exon 125867582 125869311 13118 - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0079"; repClass "LTR"; repEnd "4844"; repFamily "ERV1"; repLeft "3074"; repStart "-2893"; chr11 rmsk exon 125869314 125871008 15080 - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0079"; repClass "LTR"; repEnd "2360"; repFamily "ERV1"; repLeft "658"; repStart "-5377"; chr11 rmsk exon 125871309 125871922 15080 - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0079"; repClass "LTR"; repEnd "657"; repFamily "ERV1"; repLeft "5"; repStart "-7080"; chr11 rmsk exon 125871923 125872500 3219 - . gene_id "HERVIP10F_11q24.2"; transcript_id "HERVIP10F_11q24.2"; locus "HERVIP10F_11q24.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0079"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "1"; repStart "-48"; ### HUERSP3_11q24.2 ### chr11 rmsk gene 125873399 125875038 . + . gene_id "HUERSP3_11q24.2"; transcript_id "HUERSP3_11q24.2"; locus "HUERSP3_11q24.2"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0146"; model_cov "1090"; model_pct "12.2"; chr11 rmsk exon 125873399 125874006 3464 + . gene_id "HUERSP3_11q24.2"; transcript_id "HUERSP3_11q24.2"; locus "HUERSP3_11q24.2"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0146"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11 rmsk exon 125874042 125875038 3178 + . gene_id "HUERSP3_11q24.2"; transcript_id "HUERSP3_11q24.2"; locus "HUERSP3_11q24.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0146"; repClass "LTR"; repEnd "1115"; repFamily "ERV1"; repLeft "-7804"; repStart "25"; ### MER41_11q24.2 ### chr11 rmsk gene 126843586 126849518 . + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0382"; model_cov "5580"; model_pct "93.8"; chr11 rmsk exon 126843586 126844128 3818 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0382"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr11 rmsk exon 126844129 126844205 286 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0382"; repClass "LTR"; repEnd "-1706"; repFamily "ERV1"; repLeft "-7652"; repStart "-1809"; chr11 rmsk exon 126844215 126844256 273 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0382"; repClass "LTR"; repEnd "-1767"; repFamily "ERV1"; repLeft "-7713"; repStart "-1809"; chr11 rmsk exon 126844386 126845768 5373 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0382"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-5598"; repStart "-1590"; chr11 rmsk exon 126845771 126846536 1633 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0382"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "-3866"; repStart "1818"; chr11 rmsk exon 126846516 126848972 12677 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0382"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2709"; chr11 rmsk exon 126848973 126849518 4014 + . gene_id "MER41_11q24.2"; transcript_id "MER41_11q24.2"; locus "MER41_11q24.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0382"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_11q24.2a ### chr11 rmsk gene 127543108 127548460 . - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0900"; model_cov "5117"; model_pct "66.3"; chr11 rmsk exon 127543108 127543338 1573 - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0900"; repClass "LTR"; repEnd "7569"; repFamily "ERV1"; repLeft "7324"; repStart "-144"; chr11 rmsk exon 127543339 127543554 1366 - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0900"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 127543556 127544218 4401 - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0900"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 127544221 127548066 25064 - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0900"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr11 rmsk exon 127548069 127548460 2407 - . gene_id "HERVH_11q24.2a"; transcript_id "HERVH_11q24.2a"; locus "HERVH_11q24.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0900"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_11q24.2 ### chr11 rmsk gene 127712134 127713845 . - . gene_id "ERVLB4_11q24.2"; transcript_id "ERVLB4_11q24.2"; locus "ERVLB4_11q24.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1233"; model_cov "1572"; model_pct "27.5"; chr11 rmsk exon 127712134 127713118 5227 - . gene_id "ERVLB4_11q24.2"; transcript_id "ERVLB4_11q24.2"; locus "ERVLB4_11q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1233"; repClass "LTR"; repEnd "1577"; repFamily "ERVL"; repLeft "562"; repStart "-4137"; chr11 rmsk exon 127713310 127713845 2457 - . gene_id "ERVLB4_11q24.2"; transcript_id "ERVLB4_11q24.2"; locus "ERVLB4_11q24.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1233"; repClass "LTR"; repEnd "558"; repFamily "ERVL"; repLeft "1"; repStart "-5156"; ### HERVH_11q24.2b ### chr11 rmsk gene 127768919 127774895 . - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0901"; model_cov "5116"; model_pct "66.3"; chr11 rmsk exon 127768919 127769318 2569 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 127769319 127769696 2301 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11 rmsk exon 127769697 127769912 1319 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 127769914 127770561 4314 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 127770564 127771414 6345 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr11 rmsk exon 127771398 127774498 16305 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 127774501 127774895 2401 - . gene_id "HERVH_11q24.2b"; transcript_id "HERVH_11q24.2b"; locus "HERVH_11q24.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0901"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_11q24.3a ### chr11 rmsk gene 128092932 128097207 . + . gene_id "ERVLB4_11q24.3a"; transcript_id "ERVLB4_11q24.3a"; locus "ERVLB4_11q24.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1234"; model_cov "2914"; model_pct "51.0"; chr11 rmsk exon 128092932 128093177 1102 + . gene_id "ERVLB4_11q24.3a"; transcript_id "ERVLB4_11q24.3a"; locus "ERVLB4_11q24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1234"; repClass "LTR"; repEnd "259"; repFamily "ERVL"; repLeft "-5455"; repStart "13"; chr11 rmsk exon 128093966 128096590 14260 + . gene_id "ERVLB4_11q24.3a"; transcript_id "ERVLB4_11q24.3a"; locus "ERVLB4_11q24.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1234"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "3044"; chr11 rmsk exon 128096593 128097048 2311 + . gene_id "ERVLB4_11q24.3a"; transcript_id "ERVLB4_11q24.3a"; locus "ERVLB4_11q24.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1234"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr11 rmsk exon 128097169 128097207 264 + . gene_id "ERVLB4_11q24.3a"; transcript_id "ERVLB4_11q24.3a"; locus "ERVLB4_11q24.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1234"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "480"; ### ERVLE_11q24.3a ### chr11 rmsk gene 129347944 129348675 . + . gene_id "ERVLE_11q24.3a"; transcript_id "ERVLE_11q24.3a"; locus "ERVLE_11q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2632"; model_cov "755"; model_pct "13.3"; chr11 rmsk exon 129347944 129348675 1220 + . gene_id "ERVLE_11q24.3a"; transcript_id "ERVLE_11q24.3a"; locus "ERVLE_11q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2632"; repClass "LTR"; repEnd "2068"; repFamily "ERVL"; repLeft "-3599"; repStart "1313"; ### ERVLE_11q24.3b ### chr11 rmsk gene 129353442 129354521 . + . gene_id "ERVLE_11q24.3b"; transcript_id "ERVLE_11q24.3b"; locus "ERVLE_11q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2633"; model_cov "1054"; model_pct "18.6"; chr11 rmsk exon 129353442 129354220 2068 + . gene_id "ERVLE_11q24.3b"; transcript_id "ERVLE_11q24.3b"; locus "ERVLE_11q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2633"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "-2577"; repStart "2287"; chr11 rmsk exon 129354268 129354521 811 + . gene_id "ERVLE_11q24.3b"; transcript_id "ERVLE_11q24.3b"; locus "ERVLE_11q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2633"; repClass "LTR"; repEnd "3440"; repFamily "ERVL"; repLeft "-2227"; repStart "3189"; ### ERVLE_11q24.3c ### chr11 rmsk gene 129491268 129492583 . + . gene_id "ERVLE_11q24.3c"; transcript_id "ERVLE_11q24.3c"; locus "ERVLE_11q24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2634"; model_cov "765"; model_pct "13.5"; chr11 rmsk exon 129491268 129491423 463 + . gene_id "ERVLE_11q24.3c"; transcript_id "ERVLE_11q24.3c"; locus "ERVLE_11q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2634"; repClass "LTR"; repEnd "567"; repFamily "ERVL"; repLeft "-5100"; repStart "403"; chr11 rmsk exon 129491987 129492583 1480 + . gene_id "ERVLE_11q24.3c"; transcript_id "ERVLE_11q24.3c"; locus "ERVLE_11q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2634"; repClass "LTR"; repEnd "1465"; repFamily "ERVL"; repLeft "-4202"; repStart "864"; ### LTR25_11q24.3a ### chr11 rmsk gene 129548488 129550784 . + . gene_id "LTR25_11q24.3a"; transcript_id "LTR25_11q24.3a"; locus "LTR25_11q24.3a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0093"; model_cov "2224"; model_pct "30.9"; chr11 rmsk exon 129548488 129550784 11986 + . gene_id "LTR25_11q24.3a"; transcript_id "LTR25_11q24.3a"; locus "LTR25_11q24.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0093"; repClass "LTR"; repEnd "7132"; repFamily "ERV1"; repLeft "-56"; repStart "4908"; ### ERVLE_11q24.3d ### chr11 rmsk gene 129627563 129631486 . - . gene_id "ERVLE_11q24.3d"; transcript_id "ERVLE_11q24.3d"; locus "ERVLE_11q24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2635"; model_cov "1291"; model_pct "22.8"; chr11 rmsk exon 129627563 129627580 4403 - . gene_id "ERVLE_11q24.3d"; transcript_id "ERVLE_11q24.3d"; locus "ERVLE_11q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2635"; repClass "LTR"; repEnd "3784"; repFamily "ERVL"; repLeft "3769"; repStart "-1883"; chr11 rmsk exon 129629941 129630192 4403 - . gene_id "ERVLE_11q24.3d"; transcript_id "ERVLE_11q24.3d"; locus "ERVLE_11q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2635"; repClass "LTR"; repEnd "3768"; repFamily "ERVL"; repLeft "3523"; repStart "-1899"; chr11 rmsk exon 129630494 129631486 4403 - . gene_id "ERVLE_11q24.3d"; transcript_id "ERVLE_11q24.3d"; locus "ERVLE_11q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2635"; repClass "LTR"; repEnd "3522"; repFamily "ERVL"; repLeft "2491"; repStart "-2145"; ### ERVLE_11q24.3e ### chr11 rmsk gene 129631546 129633544 . - . gene_id "ERVLE_11q24.3e"; transcript_id "ERVLE_11q24.3e"; locus "ERVLE_11q24.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2636"; model_cov "1579"; model_pct "27.9"; chr11 rmsk exon 129631546 129632500 4403 - . gene_id "ERVLE_11q24.3e"; transcript_id "ERVLE_11q24.3e"; locus "ERVLE_11q24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2636"; repClass "LTR"; repEnd "3522"; repFamily "ERVL"; repLeft "2529"; repStart "-2145"; chr11 rmsk exon 129632858 129633220 4403 - . gene_id "ERVLE_11q24.3e"; transcript_id "ERVLE_11q24.3e"; locus "ERVLE_11q24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2636"; repClass "LTR"; repEnd "1496"; repFamily "ERVL"; repLeft "1113"; repStart "-4171"; chr11 rmsk exon 129633363 129633544 4403 - . gene_id "ERVLE_11q24.3e"; transcript_id "ERVLE_11q24.3e"; locus "ERVLE_11q24.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2636"; repClass "LTR"; repEnd "1112"; repFamily "ERVL"; repLeft "909"; repStart "-4555"; ### ERVLB4_11q24.3b ### chr11 rmsk gene 129769495 129773102 . - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1235"; model_cov "2980"; model_pct "52.2"; chr11 rmsk exon 129769495 129769534 255 - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1235"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "481"; repStart "0"; chr11 rmsk exon 129769703 129769845 731 - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1235"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "357"; repStart "-40"; chr11 rmsk exon 129769852 129769942 500 - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1235"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "1"; repStart "-458"; chr11 rmsk exon 129769943 129770138 16515 - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1235"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5498"; repStart "0"; chr11 rmsk exon 129770430 129773102 16515 - . gene_id "ERVLB4_11q24.3b"; transcript_id "ERVLB4_11q24.3b"; locus "ERVLB4_11q24.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1235"; repClass "LTR"; repEnd "5497"; repFamily "ERVL"; repLeft "2733"; repStart "-217"; ### LTR25_11q24.3b ### chr11 rmsk gene 129779830 129785817 . - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0094"; model_cov "4711"; model_pct "65.5"; chr11 rmsk exon 129779830 129780621 5257 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "6392"; repStart "-2"; chr11 rmsk exon 129780620 129781019 4019 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "5040"; repFamily "ERV1"; repLeft "4659"; repStart "-2148"; chr11 rmsk exon 129781311 129782155 13576 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "4658"; repFamily "ERV1"; repLeft "3843"; repStart "-2530"; chr11 rmsk exon 129782895 129784301 13576 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "4149"; repFamily "ERV1"; repLeft "2704"; repStart "-3039"; chr11 rmsk exon 129784598 129784783 13576 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "2703"; repFamily "ERV1"; repLeft "2491"; repStart "-4485"; chr11 rmsk exon 129784800 129784852 377 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "2318"; repFamily "ERV1"; repLeft "2266"; repStart "-4870"; chr11 rmsk exon 129784882 129784983 405 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "1617"; repFamily "ERV1"; repLeft "1508"; repStart "-5571"; chr11 rmsk exon 129784977 129785817 2527 - . gene_id "LTR25_11q24.3b"; transcript_id "LTR25_11q24.3b"; locus "LTR25_11q24.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0094"; repClass "LTR"; repEnd "1628"; repFamily "ERV1"; repLeft "725"; repStart "-5560"; ### HERVH_11q24.3a ### chr11 rmsk gene 130564387 130570121 . - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0902"; model_cov "4803"; model_pct "62.3"; chr11 rmsk exon 130564387 130564827 3711 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11 rmsk exon 130564828 130565206 2583 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 130565205 130565421 1411 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 130565498 130566057 3774 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "5044"; repFamily "ERV1"; repLeft "4488"; repStart "-2669"; chr11 rmsk exon 130566060 130566560 3390 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 130566551 130566698 878 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 130566693 130569529 16535 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr11 rmsk exon 130569530 130569674 1192 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "329"; repStart "0"; chr11 rmsk exon 130569681 130570121 3771 - . gene_id "HERVH_11q24.3a"; transcript_id "HERVH_11q24.3a"; locus "HERVH_11q24.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0902"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_11q24.3a ### chr11 rmsk gene 130587438 130589798 . - . gene_id "ERV316A3_11q24.3a"; transcript_id "ERV316A3_11q24.3a"; locus "ERV316A3_11q24.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2032"; model_cov "1623"; model_pct "31.1"; chr11 rmsk exon 130587438 130588330 2465 - . gene_id "ERV316A3_11q24.3a"; transcript_id "ERV316A3_11q24.3a"; locus "ERV316A3_11q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2032"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "2573"; repStart "-1903"; chr11 rmsk exon 130588525 130589065 1868 - . gene_id "ERV316A3_11q24.3a"; transcript_id "ERV316A3_11q24.3a"; locus "ERV316A3_11q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2032"; repClass "LTR"; repEnd "2415"; repFamily "ERVL"; repLeft "1864"; repStart "-2811"; chr11 rmsk exon 130589453 130589798 1868 - . gene_id "ERV316A3_11q24.3a"; transcript_id "ERV316A3_11q24.3a"; locus "ERV316A3_11q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2032"; repClass "LTR"; repEnd "1863"; repFamily "ERVL"; repLeft "1541"; repStart "-3363"; ### ERV316A3_11q24.3b ### chr11 rmsk gene 130592499 130594082 . - . gene_id "ERV316A3_11q24.3b"; transcript_id "ERV316A3_11q24.3b"; locus "ERV316A3_11q24.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2033"; model_cov "1236"; model_pct "23.7"; chr11 rmsk exon 130592499 130593714 3116 - . gene_id "ERV316A3_11q24.3b"; transcript_id "ERV316A3_11q24.3b"; locus "ERV316A3_11q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2033"; repClass "LTR"; repEnd "1237"; repFamily "ERVL"; repLeft "1"; repStart "-3989"; chr11 rmsk exon 130593726 130594082 927 - . gene_id "ERV316A3_11q24.3b"; transcript_id "ERV316A3_11q24.3b"; locus "ERV316A3_11q24.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2033"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "56"; repStart "-16"; ### HERVH_11q24.3b ### chr11 rmsk gene 130753498 130759137 . - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0903"; model_cov "4916"; model_pct "63.7"; chr11 rmsk exon 130753498 130753948 3443 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11 rmsk exon 130753949 130754328 2498 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 130754327 130754542 1423 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11 rmsk exon 130754544 130755205 4482 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11 rmsk exon 130755208 130755711 3418 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11 rmsk exon 130755702 130755851 957 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr11 rmsk exon 130755831 130758685 16442 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr11 rmsk exon 130758688 130759137 3514 - . gene_id "HERVH_11q24.3b"; transcript_id "HERVH_11q24.3b"; locus "HERVH_11q24.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0903"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### ERVLB4_11q25a ### chr11 rmsk gene 130928812 130933488 . - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1236"; model_cov "3633"; model_pct "63.6"; chr11 rmsk exon 130928812 130928938 734 - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1236"; repClass "LTR"; repEnd "3925"; repFamily "ERVL"; repLeft "3797"; repStart "-1789"; chr11 rmsk exon 130929605 130931426 7087 - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1236"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "1862"; repStart "-1900"; chr11 rmsk exon 130931407 130932496 4720 - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1236"; repClass "LTR"; repEnd "1760"; repFamily "ERVL"; repLeft "610"; repStart "-3954"; chr11 rmsk exon 130933002 130933437 1185 - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1236"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "2"; repStart "-5309"; chr11 rmsk exon 130933439 130933488 287 - . gene_id "ERVLB4_11q25a"; transcript_id "ERVLB4_11q25a"; locus "ERVLB4_11q25a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1236"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "343"; repStart "0"; ### ERV316A3_11q25a ### chr11 rmsk gene 131066744 131069044 . + . gene_id "ERV316A3_11q25a"; transcript_id "ERV316A3_11q25a"; locus "ERV316A3_11q25a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2034"; model_cov "2061"; model_pct "39.4"; chr11 rmsk exon 131066744 131067040 336 + . gene_id "ERV316A3_11q25a"; transcript_id "ERV316A3_11q25a"; locus "ERV316A3_11q25a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2034"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-25"; repStart "135"; chr11 rmsk exon 131067096 131067553 535 + . gene_id "ERV316A3_11q25a"; transcript_id "ERV316A3_11q25a"; locus "ERV316A3_11q25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2034"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-4697"; repStart "37"; chr11 rmsk exon 131067555 131069044 4028 + . gene_id "ERV316A3_11q25a"; transcript_id "ERV316A3_11q25a"; locus "ERV316A3_11q25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2034"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3657"; ### HERVH_11q25a ### chr11 rmsk gene 131254535 131260279 . - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0904"; model_cov "5082"; model_pct "65.9"; chr11 rmsk exon 131254535 131254930 2409 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chr11 rmsk exon 131254931 131255308 2344 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr11 rmsk exon 131255307 131255526 1366 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr11 rmsk exon 131255517 131256186 4568 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "5155"; repFamily "ERV1"; repLeft "4488"; repStart "-2558"; chr11 rmsk exon 131256179 131256691 3428 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "3492"; repStart "-3708"; chr11 rmsk exon 131256682 131259865 20500 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr11 rmsk exon 131259868 131260279 2691 - . gene_id "HERVH_11q25a"; transcript_id "HERVH_11q25a"; locus "HERVH_11q25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0904"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_11q25 ### chr11 rmsk gene 131958908 131963549 . - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0303"; model_cov "2170"; model_pct "39.2"; chr11 rmsk exon 131958908 131959343 1884 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "79"; repStart "-2"; chr11 rmsk exon 131959656 131960007 970 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "5494"; repFamily "ERVL"; repLeft "5282"; repStart "-36"; chr11 rmsk exon 131960174 131960388 524 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4992"; repStart "-324"; chr11 rmsk exon 131960735 131961554 2905 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "4617"; repFamily "ERVL"; repLeft "3786"; repStart "-913"; chr11 rmsk exon 131961554 131962062 1783 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "3854"; repFamily "ERVL"; repLeft "3342"; repStart "-1676"; chr11 rmsk exon 131962095 131962297 520 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "1318"; repFamily "ERVL"; repLeft "1126"; repStart "-4212"; chr11 rmsk exon 131962889 131963087 337 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "1"; repStart "-5320"; chr11 rmsk exon 131963090 131963549 1503 - . gene_id "HERVL40_11q25"; transcript_id "HERVL40_11q25"; locus "HERVL40_11q25"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0303"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "63"; repStart "0"; ### MER41_11q25 ### chr11 rmsk gene 132082644 132086616 . - . gene_id "MER41_11q25"; transcript_id "MER41_11q25"; locus "MER41_11q25"; category "internal"; intModel "MER41-int"; locid "MER41-int_0383"; model_cov "4124"; model_pct "69.4"; chr11 rmsk exon 132082644 132086042 11562 - . gene_id "MER41_11q25"; transcript_id "MER41_11q25"; locus "MER41_11q25"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0383"; repClass "LTR"; repEnd "5922"; repFamily "ERV1"; repLeft "1960"; repStart "-24"; chr11 rmsk exon 132086342 132086616 7939 - . gene_id "MER41_11q25"; transcript_id "MER41_11q25"; locus "MER41_11q25"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0383"; repClass "LTR"; repEnd "2672"; repFamily "ERV1"; repLeft "2510"; repStart "-3274"; ### MER61_11q25 ### chr11 rmsk gene 132086614 132088831 . - . gene_id "MER61_11q25"; transcript_id "MER61_11q25"; locus "MER61_11q25"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0273"; model_cov "756"; model_pct "14.5"; chr11 rmsk exon 132086614 132088065 4653 - . gene_id "MER61_11q25"; transcript_id "MER61_11q25"; locus "MER61_11q25"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0273"; repClass "LTR"; repEnd "4827"; repFamily "ERV1"; repLeft "4071"; repStart "-390"; chr11 rmsk exon 132088382 132088831 2369 - . gene_id "MER61_11q25"; transcript_id "MER61_11q25"; locus "MER61_11q25"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0273"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### HERVL_11q25 ### chr11 rmsk gene 132375040 132381526 . + . gene_id "HERVL_11q25"; transcript_id "HERVL_11q25"; locus "HERVL_11q25"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0944"; model_cov "5653"; model_pct "100.0"; chr11 rmsk exon 132375040 132375479 3153 + . gene_id "HERVL_11q25"; transcript_id "HERVL_11q25"; locus "HERVL_11q25"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0944"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 132375480 132381082 44377 + . gene_id "HERVL_11q25"; transcript_id "HERVL_11q25"; locus "HERVL_11q25"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0944"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr11 rmsk exon 132381083 132381526 3613 + . gene_id "HERVL_11q25"; transcript_id "HERVL_11q25"; locus "HERVL_11q25"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0944"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_11q25a ### chr11 rmsk gene 132392890 132395771 . + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2637"; model_cov "2087"; model_pct "36.8"; chr11 rmsk exon 132392890 132392909 704 + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2637"; repClass "LTR"; repEnd "2832"; repFamily "ERVL"; repLeft "-2835"; repStart "2810"; chr11 rmsk exon 132393270 132393703 704 + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2637"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-2389"; repStart "2833"; chr11 rmsk exon 132394010 132394217 381 + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2637"; repClass "LTR"; repEnd "3559"; repFamily "ERVL"; repLeft "-2108"; repStart "3344"; chr11 rmsk exon 132394343 132394671 709 + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2637"; repClass "LTR"; repEnd "4061"; repFamily "ERVL"; repLeft "-1606"; repStart "3581"; chr11 rmsk exon 132394881 132395771 1557 + . gene_id "ERVLE_11q25a"; transcript_id "ERVLE_11q25a"; locus "ERVLE_11q25a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2637"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-406"; repStart "4336"; ### ERV316A3_11q25b ### chr11 rmsk gene 132585660 132588924 . + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2035"; model_cov "2735"; model_pct "52.3"; chr11 rmsk exon 132585660 132585840 453 + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2035"; repClass "LTR"; repEnd "2007"; repFamily "ERVL"; repLeft "-3219"; repStart "1806"; chr11 rmsk exon 132585874 132587410 2415 + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2035"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2291"; repStart "1272"; chr11 rmsk exon 132587613 132588483 1720 + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2035"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "-109"; repStart "4246"; chr11 rmsk exon 132588577 132588758 248 + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2035"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "-216"; repStart "35"; chr11 rmsk exon 132588800 132588924 402 + . gene_id "ERV316A3_11q25b"; transcript_id "ERV316A3_11q25b"; locus "ERV316A3_11q25b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2035"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-6"; repStart "301"; ### ERVL_11q25 ### chr11 rmsk gene 132895029 132900105 . + . gene_id "ERVL_11q25"; transcript_id "ERVL_11q25"; locus "ERVL_11q25"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0318"; model_cov "4743"; model_pct "82.4"; chr11 rmsk exon 132895029 132896496 7671 + . gene_id "ERVL_11q25"; transcript_id "ERVL_11q25"; locus "ERVL_11q25"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0318"; repClass "LTR"; repEnd "1577"; repFamily "ERVL"; repLeft "-4180"; repStart "44"; chr11 rmsk exon 132896494 132899606 19011 + . gene_id "ERVL_11q25"; transcript_id "ERVL_11q25"; locus "ERVL_11q25"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0318"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "2546"; chr11 rmsk exon 132899608 132900105 2368 + . gene_id "ERVL_11q25"; transcript_id "ERVL_11q25"; locus "ERVL_11q25"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0318"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_11q25c ### chr11 rmsk gene 133581035 133581937 . + . gene_id "ERV316A3_11q25c"; transcript_id "ERV316A3_11q25c"; locus "ERV316A3_11q25c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2036"; model_cov "819"; model_pct "15.7"; chr11 rmsk exon 133581035 133581657 975 + . gene_id "ERV316A3_11q25c"; transcript_id "ERV316A3_11q25c"; locus "ERV316A3_11q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2036"; repClass "LTR"; repEnd "1677"; repFamily "ERVL"; repLeft "-3549"; repStart "1005"; chr11 rmsk exon 133581790 133581937 483 + . gene_id "ERV316A3_11q25c"; transcript_id "ERV316A3_11q25c"; locus "ERV316A3_11q25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2036"; repClass "LTR"; repEnd "2378"; repFamily "ERVL"; repLeft "-2848"; repStart "2231"; ### HERVH_11q25b ### chr11 rmsk gene 133626775 133632692 . + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0905"; model_cov "5116"; model_pct "66.3"; chr11 rmsk exon 133626775 133627185 2943 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr11 rmsk exon 133627188 133630194 19540 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr11 rmsk exon 133630189 133631036 5832 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr11 rmsk exon 133631040 133631702 4492 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr11 rmsk exon 133631704 133631919 1342 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr11 rmsk exon 133631913 133632296 2464 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7315"; chr11 rmsk exon 133632297 133632692 2781 + . gene_id "HERVH_11q25b"; transcript_id "HERVH_11q25b"; locus "HERVH_11q25b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0905"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_11q25b ### chr11 rmsk gene 133869042 133875426 . + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1237"; model_cov "4661"; model_pct "81.6"; chr11 rmsk exon 133869042 133869373 1627 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-40"; repStart "26"; chr11 rmsk exon 133869562 133869765 2107 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "246"; repFamily "ERVL"; repLeft "-5468"; repStart "5"; chr11 rmsk exon 133870417 133870695 2107 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "524"; repFamily "ERVL"; repLeft "-5190"; repStart "247"; chr11 rmsk exon 133871058 133871693 9952 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "1213"; repFamily "ERVL"; repLeft "-4501"; repStart "515"; chr11 rmsk exon 133872026 133873360 9952 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "2578"; repFamily "ERVL"; repLeft "-3136"; repStart "1214"; chr11 rmsk exon 133873353 133875426 12419 + . gene_id "ERVLB4_11q25b"; transcript_id "ERVLB4_11q25b"; locus "ERVLB4_11q25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1237"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-524"; repStart "3109"; ### ERV316A3_11q25d ### chr11 rmsk gene 134611316 134614604 . + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2037"; model_cov "1733"; model_pct "33.2"; chr11 rmsk exon 134611316 134611687 697 + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2037"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "38"; chr11 rmsk exon 134611844 134611946 308 + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2037"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-4790"; repStart "331"; chr11 rmsk exon 134612202 134612551 571 + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2037"; repClass "LTR"; repEnd "648"; repFamily "ERVL"; repLeft "-4578"; repStart "286"; chr11 rmsk exon 134613310 134613421 271 + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2037"; repClass "LTR"; repEnd "3219"; repFamily "ERVL"; repLeft "-2007"; repStart "3107"; chr11 rmsk exon 134613481 134614604 1495 + . gene_id "ERV316A3_11q25d"; transcript_id "ERV316A3_11q25d"; locus "ERV316A3_11q25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2037"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "-1396"; repStart "2676"; ### ERVLE_11q25b ### chr11 rmsk gene 134637554 134638719 . + . gene_id "ERVLE_11q25b"; transcript_id "ERVLE_11q25b"; locus "ERVLE_11q25b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2638"; model_cov "606"; model_pct "10.7"; chr11 rmsk exon 134637554 134637697 291 + . gene_id "ERVLE_11q25b"; transcript_id "ERVLE_11q25b"; locus "ERVLE_11q25b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2638"; repClass "LTR"; repEnd "2431"; repFamily "ERVL"; repLeft "-3236"; repStart "2284"; chr11 rmsk exon 134638287 134638719 666 + . gene_id "ERVLE_11q25b"; transcript_id "ERVLE_11q25b"; locus "ERVLE_11q25b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2638"; repClass "LTR"; repEnd "2890"; repFamily "ERVL"; repLeft "-2777"; repStart "2431"; ### ERV316A3_11q25e ### chr11 rmsk gene 134699210 134701229 . + . gene_id "ERV316A3_11q25e"; transcript_id "ERV316A3_11q25e"; locus "ERV316A3_11q25e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2038"; model_cov "1312"; model_pct "25.1"; chr11 rmsk exon 134699210 134699698 1201 + . gene_id "ERV316A3_11q25e"; transcript_id "ERV316A3_11q25e"; locus "ERV316A3_11q25e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2038"; repClass "LTR"; repEnd "4134"; repFamily "ERVL"; repLeft "-1092"; repStart "3637"; chr11 rmsk exon 134700404 134701229 1823 + . gene_id "ERV316A3_11q25e"; transcript_id "ERV316A3_11q25e"; locus "ERV316A3_11q25e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2038"; repClass "LTR"; repEnd "5190"; repFamily "ERVL"; repLeft "-36"; repStart "4375"; ### ERV316A3_11q25f ### chr11 rmsk gene 134842316 134843486 . - . gene_id "ERV316A3_11q25f"; transcript_id "ERV316A3_11q25f"; locus "ERV316A3_11q25f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2039"; model_cov "1340"; model_pct "25.6"; chr11 rmsk exon 134842316 134842958 944 - . gene_id "ERV316A3_11q25f"; transcript_id "ERV316A3_11q25f"; locus "ERV316A3_11q25f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2039"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "4106"; repStart "-416"; chr11 rmsk exon 134842985 134843109 365 - . gene_id "ERV316A3_11q25f"; transcript_id "ERV316A3_11q25f"; locus "ERV316A3_11q25f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2039"; repClass "LTR"; repEnd "3821"; repFamily "ERVL"; repLeft "3698"; repStart "-1405"; chr11 rmsk exon 134843183 134843486 794 - . gene_id "ERV316A3_11q25f"; transcript_id "ERV316A3_11q25f"; locus "ERV316A3_11q25f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2039"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "3067"; repStart "-1646"; ### HERVP71A_12p13.33a ### chr12 rmsk gene 107124 110749 . - . gene_id "HERVP71A_12p13.33a"; transcript_id "HERVP71A_12p13.33a"; locus "HERVP71A_12p13.33a"; category "internal"; intModel "HERVP71A-int"; locid "HERVP71A-int_0057"; model_cov "1825"; model_pct "24.0"; chr12 rmsk exon 107124 107397 6983 - . gene_id "HERVP71A_12p13.33a"; transcript_id "HERVP71A_12p13.33a"; locus "HERVP71A_12p13.33a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0057"; repClass "LTR"; repEnd "4930"; repFamily "ERV1"; repLeft "4660"; repStart "-2660"; chr12 rmsk exon 107710 108091 6983 - . gene_id "HERVP71A_12p13.33a"; transcript_id "HERVP71A_12p13.33a"; locus "HERVP71A_12p13.33a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0057"; repClass "LTR"; repEnd "4659"; repFamily "ERV1"; repLeft "4278"; repStart "-2931"; chr12 rmsk exon 108127 108644 6983 - . gene_id "HERVP71A_12p13.33a"; transcript_id "HERVP71A_12p13.33a"; locus "HERVP71A_12p13.33a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0057"; repClass "LTR"; repEnd "4277"; repFamily "ERV1"; repLeft "3755"; repStart "-3313"; chr12 rmsk exon 110161 110749 6454 - . gene_id "HERVP71A_12p13.33a"; transcript_id "HERVP71A_12p13.33a"; locus "HERVP71A_12p13.33a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0057"; repClass "LTR"; repEnd "1781"; repFamily "ERV1"; repLeft "1129"; repStart "-5809"; ### HERVP71A_12p13.33b ### chr12 rmsk gene 110821 112456 . - . gene_id "HERVP71A_12p13.33b"; transcript_id "HERVP71A_12p13.33b"; locus "HERVP71A_12p13.33b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0058"; model_cov "1126"; model_pct "14.8"; chr12 rmsk exon 110821 111833 6454 - . gene_id "HERVP71A_12p13.33b"; transcript_id "HERVP71A_12p13.33b"; locus "HERVP71A_12p13.33b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0058"; repClass "LTR"; repEnd "1781"; repFamily "ERV1"; repLeft "655"; repStart "-5809"; chr12 rmsk exon 111834 112456 4621 - . gene_id "HERVP71A_12p13.33b"; transcript_id "HERVP71A_12p13.33b"; locus "HERVP71A_12p13.33b"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0058"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_12p13.33 ### chr12 rmsk gene 425246 428202 . - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2040"; model_cov "1670"; model_pct "32.0"; chr12 rmsk exon 425246 425472 467 - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2040"; repClass "LTR"; repEnd "2852"; repFamily "ERVL"; repLeft "2612"; repStart "-2374"; chr12 rmsk exon 425462 425855 3131 - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2040"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "2507"; repStart "-2304"; chr12 rmsk exon 426163 426987 3131 - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2040"; repClass "LTR"; repEnd "2506"; repFamily "ERVL"; repLeft "1643"; repStart "-2720"; chr12 rmsk exon 427262 427426 3131 - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2040"; repClass "LTR"; repEnd "1642"; repFamily "ERVL"; repLeft "1490"; repStart "-3584"; chr12 rmsk exon 427832 428202 1133 - . gene_id "ERV316A3_12p13.33"; transcript_id "ERV316A3_12p13.33"; locus "ERV316A3_12p13.33"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2040"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### ERVLE_12p13.33 ### chr12 rmsk gene 2718594 2722529 . + . gene_id "ERVLE_12p13.33"; transcript_id "ERVLE_12p13.33"; locus "ERVLE_12p13.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2641"; model_cov "2540"; model_pct "44.8"; chr12 rmsk exon 2718594 2719789 4091 + . gene_id "ERVLE_12p13.33"; transcript_id "ERVLE_12p13.33"; locus "ERVLE_12p13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2641"; repClass "LTR"; repEnd "2881"; repFamily "ERVL"; repLeft "-2786"; repStart "1703"; chr12 rmsk exon 2721204 2722529 4535 + . gene_id "ERVLE_12p13.33"; transcript_id "ERVLE_12p13.33"; locus "ERVLE_12p13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2641"; repClass "LTR"; repEnd "4331"; repFamily "ERVL"; repLeft "-1336"; repStart "2969"; ### HARLEQUIN_12p13.32 ### chr12 rmsk gene 3422374 3430434 . - . gene_id "HARLEQUIN_12p13.32"; transcript_id "HARLEQUIN_12p13.32"; locus "HARLEQUIN_12p13.32"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0138"; model_cov "6895"; model_pct "100.0"; chr12 rmsk exon 3422374 3422843 3251 - . gene_id "HARLEQUIN_12p13.32"; transcript_id "HARLEQUIN_12p13.32"; locus "HARLEQUIN_12p13.32"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0138"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 3422844 3429973 33650 - . gene_id "HARLEQUIN_12p13.32"; transcript_id "HARLEQUIN_12p13.32"; locus "HARLEQUIN_12p13.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0138"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 3429974 3430434 3306 - . gene_id "HARLEQUIN_12p13.32"; transcript_id "HARLEQUIN_12p13.32"; locus "HARLEQUIN_12p13.32"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0138"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVP71A_12p13.32 ### chr12 rmsk gene 3516657 3524911 . + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0059"; model_cov "4803"; model_pct "63.3"; chr12 rmsk exon 3516657 3517297 4522 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 3517322 3517574 1918 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "277"; repFamily "ERV1"; repLeft "-7313"; repStart "25"; chr12 rmsk exon 3517573 3517620 255 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "431"; repFamily "ERV1"; repLeft "-7159"; repStart "383"; chr12 rmsk exon 3517618 3518987 7589 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "1746"; repFamily "ERV1"; repLeft "-5844"; repStart "387"; chr12 rmsk exon 3520471 3521291 15977 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "4569"; repFamily "ERV1"; repLeft "-3021"; repStart "3751"; chr12 rmsk exon 3521595 3522383 15977 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "5347"; repFamily "ERV1"; repLeft "-2243"; repStart "4570"; chr12 rmsk exon 3522672 3522778 15977 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "5467"; repFamily "ERV1"; repLeft "-2123"; repStart "5348"; chr12 rmsk exon 3522817 3524225 15977 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "6898"; repFamily "ERV1"; repLeft "-692"; repStart "5468"; chr12 rmsk exon 3524295 3524911 4500 + . gene_id "HERVP71A_12p13.32"; transcript_id "HERVP71A_12p13.32"; locus "HERVP71A_12p13.32"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0059"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_12p13.32 ### chr12 rmsk gene 4018541 4023694 . + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0906"; model_cov "4304"; model_pct "55.8"; chr12 rmsk exon 4018541 4018991 3487 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 4018994 4021963 19810 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 4021943 4022089 875 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 4022092 4022233 934 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "3644"; repFamily "ERV1"; repLeft "-4069"; repStart "3503"; chr12 rmsk exon 4022233 4022642 2505 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4740"; chr12 rmsk exon 4022644 4022867 1290 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 4022866 4023245 2469 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr12 rmsk exon 4023246 4023694 3499 + . gene_id "HERVH_12p13.32"; transcript_id "HERVH_12p13.32"; locus "HERVH_12p13.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0906"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_12p13.32 ### chr12 rmsk gene 5122826 5129865 . - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1239"; model_cov "5703"; model_pct "99.8"; chr12 rmsk exon 5122826 5123158 1785 - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1239"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "75"; repStart "-48"; chr12 rmsk exon 5123165 5127647 29252 - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1239"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "1215"; repStart "0"; chr12 rmsk exon 5128203 5129174 29252 - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1239"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "186"; repStart "-4500"; chr12 rmsk exon 5129206 5129376 29252 - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1239"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "9"; repStart "-5529"; chr12 rmsk exon 5129377 5129865 1947 - . gene_id "ERVLB4_12p13.32"; transcript_id "ERVLB4_12p13.32"; locus "ERVLB4_12p13.32"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1239"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "3"; repStart "-6"; ### ERVLE_12p13.32 ### chr12 rmsk gene 5182947 5184691 . - . gene_id "ERVLE_12p13.32"; transcript_id "ERVLE_12p13.32"; locus "ERVLE_12p13.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2643"; model_cov "1287"; model_pct "22.7"; chr12 rmsk exon 5182947 5183110 355 - . gene_id "ERVLE_12p13.32"; transcript_id "ERVLE_12p13.32"; locus "ERVLE_12p13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2643"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "2224"; repStart "-3167"; chr12 rmsk exon 5183576 5184298 317 - . gene_id "ERVLE_12p13.32"; transcript_id "ERVLE_12p13.32"; locus "ERVLE_12p13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2643"; repClass "LTR"; repEnd "1493"; repFamily "ERVL"; repLeft "764"; repStart "-4174"; chr12 rmsk exon 5184419 5184691 649 - . gene_id "ERVLE_12p13.32"; transcript_id "ERVLE_12p13.32"; locus "ERVLE_12p13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2643"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "296"; repStart "-5089"; ### MER34B_12p13.31 ### chr12 rmsk gene 5761341 5763520 . + . gene_id "MER34B_12p13.31"; transcript_id "MER34B_12p13.31"; locus "MER34B_12p13.31"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0205"; model_cov "2211"; model_pct "41.3"; chr12 rmsk exon 5761341 5763427 4192 + . gene_id "MER34B_12p13.31"; transcript_id "MER34B_12p13.31"; locus "MER34B_12p13.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0205"; repClass "LTR"; repEnd "3439"; repFamily "ERV1"; repLeft "-1917"; repStart "1228"; chr12 rmsk exon 5763432 5763520 392 + . gene_id "MER34B_12p13.31"; transcript_id "MER34B_12p13.31"; locus "MER34B_12p13.31"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0205"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-5"; repStart "470"; ### HERVL_12p13.31a ### chr12 rmsk gene 5818088 5826421 . + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0945"; model_cov "5463"; model_pct "96.6"; chr12 rmsk exon 5818088 5818443 2708 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chr12 rmsk exon 5818523 5818558 2708 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; chr12 rmsk exon 5818559 5819133 4716 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "580"; repFamily "ERVL"; repLeft "-5074"; repStart "1"; chr12 rmsk exon 5819126 5822766 36916 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "-1234"; repStart "765"; chr12 rmsk exon 5825076 5825656 36916 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "-593"; repStart "4421"; chr12 rmsk exon 5825693 5825872 36916 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "5259"; repFamily "ERVL"; repLeft "-395"; repStart "5062"; chr12 rmsk exon 5825955 5826307 36916 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "5260"; chr12 rmsk exon 5826309 5826421 892 + . gene_id "HERVL_12p13.31a"; transcript_id "HERVL_12p13.31a"; locus "HERVL_12p13.31a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0945"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "-339"; repStart "2"; ### ERVLE_12p13.31a ### chr12 rmsk gene 6406143 6407509 . - . gene_id "ERVLE_12p13.31a"; transcript_id "ERVLE_12p13.31a"; locus "ERVLE_12p13.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2644"; model_cov "1042"; model_pct "18.4"; chr12 rmsk exon 6406143 6406398 410 - . gene_id "ERVLE_12p13.31a"; transcript_id "ERVLE_12p13.31a"; locus "ERVLE_12p13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2644"; repClass "LTR"; repEnd "4797"; repFamily "ERVL"; repLeft "4540"; repStart "-870"; chr12 rmsk exon 6406419 6406653 471 - . gene_id "ERVLE_12p13.31a"; transcript_id "ERVLE_12p13.31a"; locus "ERVLE_12p13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2644"; repClass "LTR"; repEnd "4518"; repFamily "ERVL"; repLeft "4268"; repStart "-1149"; chr12 rmsk exon 6406683 6406794 1042 - . gene_id "ERVLE_12p13.31a"; transcript_id "ERVLE_12p13.31a"; locus "ERVLE_12p13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2644"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "4064"; repStart "-1505"; chr12 rmsk exon 6407089 6407509 1042 - . gene_id "ERVLE_12p13.31a"; transcript_id "ERVLE_12p13.31a"; locus "ERVLE_12p13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2644"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "3626"; repStart "-1604"; ### ERVLB4_12p13.31a ### chr12 rmsk gene 7023788 7024483 . + . gene_id "ERVLB4_12p13.31a"; transcript_id "ERVLB4_12p13.31a"; locus "ERVLB4_12p13.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1240"; model_cov "739"; model_pct "12.9"; chr12 rmsk exon 7023788 7024483 4148 + . gene_id "ERVLB4_12p13.31a"; transcript_id "ERVLB4_12p13.31a"; locus "ERVLB4_12p13.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1240"; repClass "LTR"; repEnd "1345"; repFamily "ERVL"; repLeft "-4369"; repStart "606"; ### MER4_12p13.31a ### chr12 rmsk gene 7024957 7027135 . - . gene_id "MER4_12p13.31a"; transcript_id "MER4_12p13.31a"; locus "MER4_12p13.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0564"; model_cov "1148"; model_pct "17.4"; chr12 rmsk exon 7024957 7025398 3112 - . gene_id "MER4_12p13.31a"; transcript_id "MER4_12p13.31a"; locus "MER4_12p13.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0564"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 7026042 7027135 6840 - . gene_id "MER4_12p13.31a"; transcript_id "MER4_12p13.31a"; locus "MER4_12p13.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0564"; repClass "LTR"; repEnd "5315"; repFamily "ERV1"; repLeft "4167"; repStart "-1283"; ### ERVLB4_12p13.31b ### chr12 rmsk gene 7028121 7036511 . + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1242"; model_cov "2984"; model_pct "52.2"; chr12 rmsk exon 7028121 7028147 3580 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "2777"; repFamily "ERVL"; repLeft "-2937"; repStart "2751"; chr12 rmsk exon 7028442 7028949 3580 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "3281"; repFamily "ERVL"; repLeft "-2433"; repStart "2778"; chr12 rmsk exon 7029275 7029300 3580 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "-2413"; repStart "3282"; chr12 rmsk exon 7029677 7029909 2692 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "3520"; repFamily "ERVL"; repLeft "-2194"; repStart "3289"; chr12 rmsk exon 7030210 7030241 2692 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "3546"; repFamily "ERVL"; repLeft "-2168"; repStart "3521"; chr12 rmsk exon 7031842 7032041 2692 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "3764"; repFamily "ERVL"; repLeft "-1950"; repStart "3547"; chr12 rmsk exon 7034169 7035773 11783 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "5367"; repFamily "ERVL"; repLeft "-347"; repStart "3750"; chr12 rmsk exon 7035840 7036181 11783 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5368"; chr12 rmsk exon 7036182 7036511 1476 + . gene_id "ERVLB4_12p13.31b"; transcript_id "ERVLB4_12p13.31b"; locus "ERVLB4_12p13.31b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1242"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-166"; repStart "1"; ### HERVW_12p13.31a ### chr12 rmsk gene 7181147 7186533 . + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0222"; model_cov "4090"; model_pct "47.4"; chr12 rmsk exon 7181147 7181648 3312 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "-2"; repStart "256"; chr12 rmsk exon 7181651 7182350 5025 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "-7938"; repStart "2"; chr12 rmsk exon 7182808 7185869 25020 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "4578"; repFamily "ERV1"; repLeft "-4048"; repStart "1535"; chr12 rmsk exon 7185858 7185928 589 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7478"; chr12 rmsk exon 7185919 7186205 2310 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 7186206 7186533 2451 + . gene_id "HERVW_12p13.31a"; transcript_id "HERVW_12p13.31a"; locus "HERVW_12p13.31a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0222"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_12p13.31b ### chr12 rmsk gene 7220204 7221408 . + . gene_id "ERVLE_12p13.31b"; transcript_id "ERVLE_12p13.31b"; locus "ERVLE_12p13.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2645"; model_cov "1242"; model_pct "21.9"; chr12 rmsk exon 7220204 7220765 2241 + . gene_id "ERVLE_12p13.31b"; transcript_id "ERVLE_12p13.31b"; locus "ERVLE_12p13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2645"; repClass "LTR"; repEnd "4059"; repFamily "ERVL"; repLeft "-1608"; repStart "3472"; chr12 rmsk exon 7220759 7221408 2488 + . gene_id "ERVLE_12p13.31b"; transcript_id "ERVLE_12p13.31b"; locus "ERVLE_12p13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2645"; repClass "LTR"; repEnd "4888"; repFamily "ERVL"; repLeft "-779"; repStart "4233"; ### MER4B_12p13.31a ### chr12 rmsk gene 7281171 7283188 . + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0327"; model_cov "700"; model_pct "10.4"; chr12 rmsk exon 7281171 7281816 5186 + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0327"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "-344"; repStart "1"; chr12 rmsk exon 7282107 7282451 5186 + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0327"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "557"; chr12 rmsk exon 7282454 7282524 425 + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0327"; repClass "LTR"; repEnd "77"; repFamily "ERV1"; repLeft "-6681"; repStart "6"; chr12 rmsk exon 7282523 7282638 598 + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0327"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "-6473"; repStart "168"; chr12 rmsk exon 7282681 7283188 2789 + . gene_id "MER4B_12p13.31a"; transcript_id "MER4B_12p13.31a"; locus "MER4B_12p13.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0327"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "-6008"; repStart "238"; ### MER4B_12p13.31b ### chr12 rmsk gene 7288564 7296167 . + . gene_id "MER4B_12p13.31b"; transcript_id "MER4B_12p13.31b"; locus "MER4B_12p13.31b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0328"; model_cov "6008"; model_pct "88.9"; chr12 rmsk exon 7288564 7290629 11782 + . gene_id "MER4B_12p13.31b"; transcript_id "MER4B_12p13.31b"; locus "MER4B_12p13.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0328"; repClass "LTR"; repEnd "2924"; repFamily "ERV1"; repLeft "-3834"; repStart "729"; chr12 rmsk exon 7291315 7292198 11782 + . gene_id "MER4B_12p13.31b"; transcript_id "MER4B_12p13.31b"; locus "MER4B_12p13.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0328"; repClass "LTR"; repEnd "3820"; repFamily "ERV1"; repLeft "-2938"; repStart "2925"; chr12 rmsk exon 7292543 7295532 17414 + . gene_id "MER4B_12p13.31b"; transcript_id "MER4B_12p13.31b"; locus "MER4B_12p13.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0328"; repClass "LTR"; repEnd "6736"; repFamily "ERV1"; repLeft "-22"; repStart "3818"; chr12 rmsk exon 7295557 7296167 2971 + . gene_id "MER4B_12p13.31b"; transcript_id "MER4B_12p13.31b"; locus "MER4B_12p13.31b"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0328"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_12p13.31b ### chr12 rmsk gene 7296170 7298140 . - . gene_id "MER4_12p13.31b"; transcript_id "MER4_12p13.31b"; locus "MER4_12p13.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0566"; model_cov "1367"; model_pct "20.7"; chr12 rmsk exon 7296170 7296566 1140 - . gene_id "MER4_12p13.31b"; transcript_id "MER4_12p13.31b"; locus "MER4_12p13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0566"; repClass "LTR"; repEnd "2411"; repFamily "ERV1"; repLeft "2153"; repStart "-4187"; chr12 rmsk exon 7296628 7297697 3859 - . gene_id "MER4_12p13.31b"; transcript_id "MER4_12p13.31b"; locus "MER4_12p13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0566"; repClass "LTR"; repEnd "1110"; repFamily "ERV1"; repLeft "1"; repStart "-5488"; chr12 rmsk exon 7297701 7298140 2986 - . gene_id "MER4_12p13.31b"; transcript_id "MER4_12p13.31b"; locus "MER4_12p13.31b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0566"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12p13.31c ### chr12 rmsk gene 7396451 7398207 . + . gene_id "ERVLB4_12p13.31c"; transcript_id "ERVLB4_12p13.31c"; locus "ERVLB4_12p13.31c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1243"; model_cov "1118"; model_pct "19.6"; chr12 rmsk exon 7396451 7396837 2273 + . gene_id "ERVLB4_12p13.31c"; transcript_id "ERVLB4_12p13.31c"; locus "ERVLB4_12p13.31c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1243"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr12 rmsk exon 7396928 7397397 2392 + . gene_id "ERVLB4_12p13.31c"; transcript_id "ERVLB4_12p13.31c"; locus "ERVLB4_12p13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1243"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-5252"; repStart "1"; chr12 rmsk exon 7397579 7398055 2401 + . gene_id "ERVLB4_12p13.31c"; transcript_id "ERVLB4_12p13.31c"; locus "ERVLB4_12p13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1243"; repClass "LTR"; repEnd "1235"; repFamily "ERVL"; repLeft "-4479"; repStart "722"; chr12 rmsk exon 7398071 7398207 786 + . gene_id "ERVLB4_12p13.31c"; transcript_id "ERVLB4_12p13.31c"; locus "ERVLB4_12p13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1243"; repClass "LTR"; repEnd "1778"; repFamily "ERVL"; repLeft "-3936"; repStart "1634"; ### MER101_12p13.31a ### chr12 rmsk gene 7538847 7540942 . - . gene_id "MER101_12p13.31a"; transcript_id "MER101_12p13.31a"; locus "MER101_12p13.31a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0278"; model_cov "2005"; model_pct "30.2"; chr12 rmsk exon 7538847 7540188 3566 - . gene_id "MER101_12p13.31a"; transcript_id "MER101_12p13.31a"; locus "MER101_12p13.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0278"; repClass "LTR"; repEnd "5115"; repFamily "ERV1"; repLeft "3239"; repStart "-1524"; chr12 rmsk exon 7540794 7540889 679 - . gene_id "MER101_12p13.31a"; transcript_id "MER101_12p13.31a"; locus "MER101_12p13.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0278"; repClass "LTR"; repEnd "2884"; repFamily "ERV1"; repLeft "2791"; repStart "-3755"; chr12 rmsk exon 7540915 7540942 679 - . gene_id "MER101_12p13.31a"; transcript_id "MER101_12p13.31a"; locus "MER101_12p13.31a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0278"; repClass "LTR"; repEnd "2790"; repFamily "ERV1"; repLeft "2754"; repStart "-3849"; ### HERVP71A_12p13.31a ### chr12 rmsk gene 7588093 7593696 . + . gene_id "HERVP71A_12p13.31a"; transcript_id "HERVP71A_12p13.31a"; locus "HERVP71A_12p13.31a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0060"; model_cov "3078"; model_pct "40.6"; chr12 rmsk exon 7588093 7588550 3122 + . gene_id "HERVP71A_12p13.31a"; transcript_id "HERVP71A_12p13.31a"; locus "HERVP71A_12p13.31a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0060"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 7588553 7589160 3788 + . gene_id "HERVP71A_12p13.31a"; transcript_id "HERVP71A_12p13.31a"; locus "HERVP71A_12p13.31a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0060"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "-6947"; repStart "3"; chr12 rmsk exon 7591234 7593696 17142 + . gene_id "HERVP71A_12p13.31a"; transcript_id "HERVP71A_12p13.31a"; locus "HERVP71A_12p13.31a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0060"; repClass "LTR"; repEnd "3091"; repFamily "ERV1"; repLeft "-4499"; repStart "653"; ### HERVP71A_12p13.31b ### chr12 rmsk gene 7600342 7606495 . + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0061"; model_cov "4407"; model_pct "58.1"; chr12 rmsk exon 7600342 7600508 1164 + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0061"; repClass "LTR"; repEnd "3248"; repFamily "ERV1"; repLeft "-4342"; repStart "3082"; chr12 rmsk exon 7600509 7602645 24249 + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0061"; repClass "LTR"; repEnd "5494"; repFamily "ERV1"; repLeft "-2096"; repStart "3364"; chr12 rmsk exon 7602947 7604294 24249 + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0061"; repClass "LTR"; repEnd "6846"; repFamily "ERV1"; repLeft "-744"; repStart "5495"; chr12 rmsk exon 7605275 7606032 4457 + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0061"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6828"; chr12 rmsk exon 7606100 7606495 2802 + . gene_id "HERVP71A_12p13.31b"; transcript_id "HERVP71A_12p13.31b"; locus "HERVP71A_12p13.31b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0061"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-61"; repStart "1"; ### HUERSP3_12p13.31 ### chr12 rmsk gene 7641019 7646551 . + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0148"; model_cov "3858"; model_pct "43.3"; chr12 rmsk exon 7641019 7641566 7666 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "2163"; repFamily "ERV1"; repLeft "-6756"; repStart "1308"; chr12 rmsk exon 7641855 7642913 7666 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2164"; chr12 rmsk exon 7642917 7643059 825 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4539"; chr12 rmsk exon 7643061 7643281 4493 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "5127"; repFamily "ERV1"; repLeft "-3792"; repStart "4901"; chr12 rmsk exon 7643582 7644023 4493 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "-3343"; repStart "5128"; chr12 rmsk exon 7644009 7644756 4190 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "6933"; repFamily "ERV1"; repLeft "-1986"; repStart "6162"; chr12 rmsk exon 7644747 7644807 291 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "8396"; repFamily "ERV1"; repLeft "-523"; repStart "8347"; chr12 rmsk exon 7645106 7645178 291 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "8457"; repFamily "ERV1"; repLeft "-462"; repStart "8397"; chr12 rmsk exon 7645664 7645936 1285 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr12 rmsk exon 7645937 7646551 3002 + . gene_id "HUERSP3_12p13.31"; transcript_id "HUERSP3_12p13.31"; locus "HUERSP3_12p13.31"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0148"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "-1"; repStart "7"; ### HERVL_12p13.31b ### chr12 rmsk gene 7996848 8005194 . + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0946"; model_cov "4736"; model_pct "83.8"; chr12 rmsk exon 7996848 7997330 15747 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "1408"; repFamily "ERVL"; repLeft "-4246"; repStart "926"; chr12 rmsk exon 7997663 7998149 15747 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "1886"; repFamily "ERVL"; repLeft "-3768"; repStart "1409"; chr12 rmsk exon 7998452 7999255 15747 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "2679"; repFamily "ERVL"; repLeft "-2975"; repStart "1887"; chr12 rmsk exon 7999573 7999807 15747 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "2897"; repFamily "ERVL"; repLeft "-2757"; repStart "2680"; chr12 rmsk exon 8000558 8002151 12848 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "4520"; repFamily "ERVL"; repLeft "-1134"; repStart "2893"; chr12 rmsk exon 8002620 8003405 8883 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "-361"; repStart "4510"; chr12 rmsk exon 8003708 8003845 8883 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "5414"; repFamily "ERVL"; repLeft "-240"; repStart "5294"; chr12 rmsk exon 8004147 8004323 8883 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "5589"; repFamily "ERVL"; repLeft "-65"; repStart "5415"; chr12 rmsk exon 8004615 8004689 8883 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5590"; chr12 rmsk exon 8004690 8005065 2810 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr12 rmsk exon 8005155 8005194 2810 + . gene_id "HERVL_12p13.31b"; transcript_id "HERVL_12p13.31b"; locus "HERVL_12p13.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0946"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "405"; ### ERVLB4_12p13.31d ### chr12 rmsk gene 8114823 8116815 . - . gene_id "ERVLB4_12p13.31d"; transcript_id "ERVLB4_12p13.31d"; locus "ERVLB4_12p13.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1244"; model_cov "1372"; model_pct "24.0"; chr12 rmsk exon 8114823 8115300 572 - . gene_id "ERVLB4_12p13.31d"; transcript_id "ERVLB4_12p13.31d"; locus "ERVLB4_12p13.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1244"; repClass "LTR"; repEnd "3401"; repFamily "ERVL"; repLeft "2706"; repStart "-2313"; chr12 rmsk exon 8115483 8115711 438 - . gene_id "ERVLB4_12p13.31d"; transcript_id "ERVLB4_12p13.31d"; locus "ERVLB4_12p13.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1244"; repClass "LTR"; repEnd "2783"; repFamily "ERVL"; repLeft "2565"; repStart "-2931"; chr12 rmsk exon 8116403 8116815 974 - . gene_id "ERVLB4_12p13.31d"; transcript_id "ERVLB4_12p13.31d"; locus "ERVLB4_12p13.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1244"; repClass "LTR"; repEnd "2526"; repFamily "ERVL"; repLeft "2067"; repStart "-3188"; ### HERVH_12p13.31a ### chr12 rmsk gene 8279023 8282298 . - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0907"; model_cov "1818"; model_pct "23.6"; chr12 rmsk exon 8279023 8279420 2524 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr12 rmsk exon 8279422 8279798 2499 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 8279799 8280000 1178 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 8280002 8280067 4265 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5090"; repStart "-2564"; chr12 rmsk exon 8281141 8281742 4265 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "4488"; repStart "-2624"; chr12 rmsk exon 8281746 8282298 4156 - . gene_id "HERVH_12p13.31a"; transcript_id "HERVH_12p13.31a"; locus "HERVH_12p13.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0907"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3442"; repStart "-3721"; ### HERVE_12p13.31a ### chr12 rmsk gene 8282299 8290617 . - . gene_id "HERVE_12p13.31a"; transcript_id "HERVE_12p13.31a"; locus "HERVE_12p13.31a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0114"; model_cov "7809"; model_pct "99.9"; chr12 rmsk exon 8282299 8282795 3662 - . gene_id "HERVE_12p13.31a"; transcript_id "HERVE_12p13.31a"; locus "HERVE_12p13.31a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0114"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 8282796 8290617 62931 - . gene_id "HERVE_12p13.31a"; transcript_id "HERVE_12p13.31a"; locus "HERVE_12p13.31a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0114"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "3"; repStart "-1"; ### HERVH_12p13.31b ### chr12 rmsk gene 8290618 8294090 . - . gene_id "HERVH_12p13.31b"; transcript_id "HERVH_12p13.31b"; locus "HERVH_12p13.31b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0908"; model_cov "3304"; model_pct "42.8"; chr12 rmsk exon 8290618 8290922 2146 - . gene_id "HERVH_12p13.31b"; transcript_id "HERVH_12p13.31b"; locus "HERVH_12p13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0908"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "3140"; repStart "-4272"; chr12 rmsk exon 8290893 8293739 15913 - . gene_id "HERVH_12p13.31b"; transcript_id "HERVH_12p13.31b"; locus "HERVH_12p13.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0908"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "1"; repStart "-4709"; chr12 rmsk exon 8293742 8294090 1967 - . gene_id "HERVH_12p13.31b"; transcript_id "HERVH_12p13.31b"; locus "HERVH_12p13.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0908"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_12p13.31a ### chr12 rmsk gene 8317488 8324925 . - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0037"; model_cov "6463"; model_pct "72.0"; chr12 rmsk exon 8317488 8318041 4453 - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0037"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 8318042 8318358 2180 - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0037"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr12 rmsk exon 8318356 8321168 14189 - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0037"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "4870"; repStart "-1192"; chr12 rmsk exon 8321178 8324368 22704 - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0037"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr12 rmsk exon 8324371 8324925 4200 - . gene_id "HERVS71_12p13.31a"; transcript_id "HERVS71_12p13.31a"; locus "HERVS71_12p13.31a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0037"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12p13.31e ### chr12 rmsk gene 8392267 8392867 . + . gene_id "ERVLB4_12p13.31e"; transcript_id "ERVLB4_12p13.31e"; locus "ERVLB4_12p13.31e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1245"; model_cov "631"; model_pct "11.0"; chr12 rmsk exon 8392267 8392867 2860 + . gene_id "ERVLB4_12p13.31e"; transcript_id "ERVLB4_12p13.31e"; locus "ERVLB4_12p13.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1245"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### ERVLB4_12p13.31f ### chr12 rmsk gene 8398411 8399014 . + . gene_id "ERVLB4_12p13.31f"; transcript_id "ERVLB4_12p13.31f"; locus "ERVLB4_12p13.31f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1246"; model_cov "631"; model_pct "11.0"; chr12 rmsk exon 8398411 8399014 2822 + . gene_id "ERVLB4_12p13.31f"; transcript_id "ERVLB4_12p13.31f"; locus "ERVLB4_12p13.31f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1246"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "-3610"; repStart "1473"; ### HERVE_12p13.31b ### chr12 rmsk gene 8419057 8423114 . - . gene_id "HERVE_12p13.31b"; transcript_id "HERVE_12p13.31b"; locus "HERVE_12p13.31b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0115"; model_cov "4057"; model_pct "51.9"; chr12 rmsk exon 8419057 8423114 27017 - . gene_id "HERVE_12p13.31b"; transcript_id "HERVE_12p13.31b"; locus "HERVE_12p13.31b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0115"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "1108"; repStart "-2648"; ### HERVE_12p13.31c ### chr12 rmsk gene 8441913 8443743 . - . gene_id "HERVE_12p13.31c"; transcript_id "HERVE_12p13.31c"; locus "HERVE_12p13.31c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0116"; model_cov "1866"; model_pct "23.9"; chr12 rmsk exon 8441913 8442103 1363 - . gene_id "HERVE_12p13.31c"; transcript_id "HERVE_12p13.31c"; locus "HERVE_12p13.31c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0116"; repClass "LTR"; repEnd "5174"; repFamily "ERV1"; repLeft "4984"; repStart "-2639"; chr12 rmsk exon 8442099 8443743 10978 - . gene_id "HERVE_12p13.31c"; transcript_id "HERVE_12p13.31c"; locus "HERVE_12p13.31c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0116"; repClass "LTR"; repEnd "2784"; repFamily "ERV1"; repLeft "1108"; repStart "-5029"; ### HML5_12p13.31 ### chr12 rmsk gene 8558451 8562470 . - . gene_id "HML5_12p13.31"; transcript_id "HML5_12p13.31"; locus "HML5_12p13.31"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0085"; model_cov "4033"; model_pct "59.0"; chr12 rmsk exon 8558451 8562470 31298 - . gene_id "HML5_12p13.31"; transcript_id "HML5_12p13.31"; locus "HML5_12p13.31"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0085"; repClass "LTR"; repEnd "6349"; repFamily "ERVK"; repLeft "2316"; repStart "-488"; ### HERVW_12p13.31b ### chr12 rmsk gene 8761414 8768468 . - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0223"; model_cov "6391"; model_pct "74.1"; chr12 rmsk exon 8761414 8761742 2238 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chr12 rmsk exon 8761743 8762034 2502 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8336"; repStart "0"; chr12 rmsk exon 8762026 8762064 302 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr12 rmsk exon 8762061 8762218 1181 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "6985"; repStart "-1479"; chr12 rmsk exon 8762210 8767962 41652 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "5902"; repFamily "ERV1"; repLeft "1"; repStart "-2724"; chr12 rmsk exon 8767963 8768468 3684 - . gene_id "HERVW_12p13.31b"; transcript_id "HERVW_12p13.31b"; locus "HERVW_12p13.31b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0223"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVH_12p13.31c ### chr12 rmsk gene 8804879 8810576 . + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0909"; model_cov "4906"; model_pct "63.6"; chr12 rmsk exon 8804879 8805281 2836 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 8805284 8808324 19648 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr12 rmsk exon 8808319 8808466 906 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 8808457 8808959 3607 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr12 rmsk exon 8808962 8809579 2950 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 8809581 8809796 1412 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 8809797 8810169 2306 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 8810170 8810576 2895 + . gene_id "HERVH_12p13.31c"; transcript_id "HERVH_12p13.31c"; locus "HERVH_12p13.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0909"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR19_12p13.31 ### chr12 rmsk gene 9139752 9144991 . - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0035"; model_cov "4337"; model_pct "77.6"; chr12 rmsk exon 9139752 9140166 2922 - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0035"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "61"; repStart "0"; chr12 rmsk exon 9140167 9140495 2372 - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0035"; repClass "LTR"; repEnd "5454"; repFamily "ERV1"; repLeft "5126"; repStart "-132"; chr12 rmsk exon 9140491 9141004 3697 - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0035"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "3866"; repStart "-1205"; chr12 rmsk exon 9141033 9144517 24588 - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0035"; repClass "LTR"; repEnd "3495"; repFamily "ERV1"; repLeft "1"; repStart "-2091"; chr12 rmsk exon 9144518 9144991 3620 - . gene_id "LTR19_12p13.31"; transcript_id "LTR19_12p13.31"; locus "LTR19_12p13.31"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0035"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVS71_12p13.31b ### chr12 rmsk gene 9322989 9327851 . - . gene_id "HERVS71_12p13.31b"; transcript_id "HERVS71_12p13.31b"; locus "HERVS71_12p13.31b"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0038"; model_cov "4349"; model_pct "48.4"; chr12 rmsk exon 9322989 9323537 3835 - . gene_id "HERVS71_12p13.31b"; transcript_id "HERVS71_12p13.31b"; locus "HERVS71_12p13.31b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0038"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 9323538 9323749 1043 - . gene_id "HERVS71_12p13.31b"; transcript_id "HERVS71_12p13.31b"; locus "HERVS71_12p13.31b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0038"; repClass "LTR"; repEnd "8873"; repFamily "ERV1"; repLeft "8659"; repStart "-105"; chr12 rmsk exon 9323741 9325723 12566 - . gene_id "HERVS71_12p13.31b"; transcript_id "HERVS71_12p13.31b"; locus "HERVS71_12p13.31b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0038"; repClass "LTR"; repEnd "6955"; repFamily "ERV1"; repLeft "4977"; repStart "-2023"; chr12 rmsk exon 9325717 9327851 12273 - . gene_id "HERVS71_12p13.31b"; transcript_id "HERVS71_12p13.31b"; locus "HERVS71_12p13.31b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0038"; repClass "LTR"; repEnd "3501"; repFamily "ERV1"; repLeft "1344"; repStart "-5477"; ### PABLB_12p13.31 ### chr12 rmsk gene 9458421 9461576 . - . gene_id "PABLB_12p13.31"; transcript_id "PABLB_12p13.31"; locus "PABLB_12p13.31"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0069"; model_cov "2509"; model_pct "35.2"; chr12 rmsk exon 9458421 9458731 1627 - . gene_id "PABLB_12p13.31"; transcript_id "PABLB_12p13.31"; locus "PABLB_12p13.31"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0069"; repClass "LTR"; repEnd "3366"; repFamily "ERV1"; repLeft "3050"; repStart "-3756"; chr12 rmsk exon 9459037 9459860 1627 - . gene_id "PABLB_12p13.31"; transcript_id "PABLB_12p13.31"; locus "PABLB_12p13.31"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0069"; repClass "LTR"; repEnd "3049"; repFamily "ERV1"; repLeft "2209"; repStart "-4073"; chr12 rmsk exon 9459965 9461079 1482 - . gene_id "PABLB_12p13.31"; transcript_id "PABLB_12p13.31"; locus "PABLB_12p13.31"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0069"; repClass "LTR"; repEnd "2061"; repFamily "ERV1"; repLeft "937"; repStart "-5061"; chr12 rmsk exon 9461365 9461576 335 - . gene_id "PABLB_12p13.31"; transcript_id "PABLB_12p13.31"; locus "PABLB_12p13.31"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0069"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "538"; repStart "-6355"; ### MER61_12p13.31a ### chr12 rmsk gene 9636613 9641669 . - . gene_id "MER61_12p13.31a"; transcript_id "MER61_12p13.31a"; locus "MER61_12p13.31a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0274"; model_cov "4573"; model_pct "87.7"; chr12 rmsk exon 9636613 9636918 1274 - . gene_id "MER61_12p13.31a"; transcript_id "MER61_12p13.31a"; locus "MER61_12p13.31a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0274"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr12 rmsk exon 9636919 9638847 24625 - . gene_id "MER61_12p13.31a"; transcript_id "MER61_12p13.31a"; locus "MER61_12p13.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0274"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3269"; repStart "0"; chr12 rmsk exon 9639160 9641363 24625 - . gene_id "MER61_12p13.31a"; transcript_id "MER61_12p13.31a"; locus "MER61_12p13.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0274"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "958"; repStart "-1949"; chr12 rmsk exon 9641364 9641669 1690 - . gene_id "MER61_12p13.31a"; transcript_id "MER61_12p13.31a"; locus "MER61_12p13.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0274"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "525"; repStart "-4377"; ### MER101_12p13.31b ### chr12 rmsk gene 9657215 9660579 . + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0279"; model_cov "2438"; model_pct "36.7"; chr12 rmsk exon 9657215 9657428 1093 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0279"; repClass "LTR"; repEnd "2737"; repFamily "ERV1"; repLeft "-3902"; repStart "2519"; chr12 rmsk exon 9657433 9657572 649 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0279"; repClass "LTR"; repEnd "3038"; repFamily "ERV1"; repLeft "-3601"; repStart "2891"; chr12 rmsk exon 9657569 9658605 7545 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0279"; repClass "LTR"; repEnd "4297"; repFamily "ERV1"; repLeft "-2342"; repStart "3221"; chr12 rmsk exon 9658902 9659373 7545 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0279"; repClass "LTR"; repEnd "4768"; repFamily "ERV1"; repLeft "-1871"; repStart "4298"; chr12 rmsk exon 9659718 9660236 2821 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0279"; repClass "LTR"; repEnd "6582"; repFamily "ERV1"; repLeft "-57"; repStart "6055"; chr12 rmsk exon 9660257 9660579 1547 + . gene_id "MER101_12p13.31b"; transcript_id "MER101_12p13.31b"; locus "MER101_12p13.31b"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0279"; repClass "LTR"; repEnd "368"; repFamily "ERV1"; repLeft "-106"; repStart "24"; ### HUERSP2_12p13.31 ### chr12 rmsk gene 9707423 9711259 . + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0092"; model_cov "2711"; model_pct "87.8"; chr12 rmsk exon 9707423 9707545 772 + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0092"; repClass "LTR"; repEnd "122"; repFamily "ERV1"; repLeft "-715"; repStart "1"; chr12 rmsk exon 9707540 9707677 994 + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0092"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "701"; chr12 rmsk exon 9707770 9709787 12158 + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0092"; repClass "LTR"; repEnd "2260"; repFamily "ERV1"; repLeft "-828"; repStart "207"; chr12 rmsk exon 9709788 9710434 3764 + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0092"; repClass "LTR"; repEnd "3078"; repFamily "ERV1"; repLeft "-10"; repStart "2420"; chr12 rmsk exon 9710435 9711259 4686 + . gene_id "HUERSP2_12p13.31"; transcript_id "HUERSP2_12p13.31"; locus "HUERSP2_12p13.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0092"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "53"; ### HERVEA_12p13.31 ### chr12 rmsk gene 9712931 9715636 . - . gene_id "HERVEA_12p13.31"; transcript_id "HERVEA_12p13.31"; locus "HERVEA_12p13.31"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0066"; model_cov "2047"; model_pct "26.1"; chr12 rmsk exon 9712931 9713262 2826 - . gene_id "HERVEA_12p13.31"; transcript_id "HERVEA_12p13.31"; locus "HERVEA_12p13.31"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0066"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "152"; repStart "0"; chr12 rmsk exon 9713451 9713598 1297 - . gene_id "HERVEA_12p13.31"; transcript_id "HERVEA_12p13.31"; locus "HERVEA_12p13.31"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0066"; repClass "LTR"; repEnd "148"; repFamily "ERV1"; repLeft "1"; repStart "-335"; chr12 rmsk exon 9713599 9715636 11718 - . gene_id "HERVEA_12p13.31"; transcript_id "HERVEA_12p13.31"; locus "HERVEA_12p13.31"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0066"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "5800"; repStart "0"; ### ERVLE_12p13.31c ### chr12 rmsk gene 9815604 9818670 . - . gene_id "ERVLE_12p13.31c"; transcript_id "ERVLE_12p13.31c"; locus "ERVLE_12p13.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2649"; model_cov "984"; model_pct "17.4"; chr12 rmsk exon 9815604 9815816 980 - . gene_id "ERVLE_12p13.31c"; transcript_id "ERVLE_12p13.31c"; locus "ERVLE_12p13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2649"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4941"; repStart "-444"; chr12 rmsk exon 9816117 9816535 980 - . gene_id "ERVLE_12p13.31c"; transcript_id "ERVLE_12p13.31c"; locus "ERVLE_12p13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2649"; repClass "LTR"; repEnd "4927"; repFamily "ERVL"; repLeft "4503"; repStart "-740"; chr12 rmsk exon 9818401 9818670 801 - . gene_id "ERVLE_12p13.31c"; transcript_id "ERVLE_12p13.31c"; locus "ERVLE_12p13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2649"; repClass "LTR"; repEnd "4483"; repFamily "ERVL"; repLeft "4205"; repStart "-1184"; ### HERVH_12p13.31d ### chr12 rmsk gene 9833927 9836182 . - . gene_id "HERVH_12p13.31d"; transcript_id "HERVH_12p13.31d"; locus "HERVH_12p13.31d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0910"; model_cov "1831"; model_pct "23.7"; chr12 rmsk exon 9833927 9834338 2922 - . gene_id "HERVH_12p13.31d"; transcript_id "HERVH_12p13.31d"; locus "HERVH_12p13.31d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0910"; repClass "LTR"; repEnd "405"; repFamily "ERV1"; repLeft "1"; repStart "-45"; chr12 rmsk exon 9834340 9836182 13097 - . gene_id "HERVH_12p13.31d"; transcript_id "HERVH_12p13.31d"; locus "HERVH_12p13.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0910"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "5881"; repStart "-1"; ### ERVLE_12p13.31d ### chr12 rmsk gene 9879671 9880497 . + . gene_id "ERVLE_12p13.31d"; transcript_id "ERVLE_12p13.31d"; locus "ERVLE_12p13.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2651"; model_cov "813"; model_pct "14.3"; chr12 rmsk exon 9879671 9879755 307 + . gene_id "ERVLE_12p13.31d"; transcript_id "ERVLE_12p13.31d"; locus "ERVLE_12p13.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2651"; repClass "LTR"; repEnd "2735"; repFamily "ERVL"; repLeft "-2932"; repStart "2651"; chr12 rmsk exon 9879789 9880497 1253 + . gene_id "ERVLE_12p13.31d"; transcript_id "ERVLE_12p13.31d"; locus "ERVLE_12p13.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2651"; repClass "LTR"; repEnd "4065"; repFamily "ERVL"; repLeft "-1602"; repStart "3336"; ### MER61_12p13.31b ### chr12 rmsk gene 9898776 9902230 . - . gene_id "MER61_12p13.31b"; transcript_id "MER61_12p13.31b"; locus "MER61_12p13.31b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0275"; model_cov "3514"; model_pct "67.4"; chr12 rmsk exon 9898776 9899297 2438 - . gene_id "MER61_12p13.31b"; transcript_id "MER61_12p13.31b"; locus "MER61_12p13.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0275"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4657"; repStart "0"; chr12 rmsk exon 9899288 9899338 357 - . gene_id "MER61_12p13.31b"; transcript_id "MER61_12p13.31b"; locus "MER61_12p13.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0275"; repClass "LTR"; repEnd "4707"; repFamily "ERV1"; repLeft "4657"; repStart "-510"; chr12 rmsk exon 9899329 9902230 20237 - . gene_id "MER61_12p13.31b"; transcript_id "MER61_12p13.31b"; locus "MER61_12p13.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0275"; repClass "LTR"; repEnd "4707"; repFamily "ERV1"; repLeft "1803"; repStart "-510"; ### HERVI_12p13.31 ### chr12 rmsk gene 9902662 9911410 . - . gene_id "HERVI_12p13.31"; transcript_id "HERVI_12p13.31"; locus "HERVI_12p13.31"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0025"; model_cov "7750"; model_pct "99.6"; chr12 rmsk exon 9902662 9903165 2091 - . gene_id "HERVI_12p13.31"; transcript_id "HERVI_12p13.31"; locus "HERVI_12p13.31"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0025"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-5"; chr12 rmsk exon 9903202 9910908 33999 - . gene_id "HERVI_12p13.31"; transcript_id "HERVI_12p13.31"; locus "HERVI_12p13.31"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0025"; repClass "LTR"; repEnd "7754"; repFamily "ERV1"; repLeft "4"; repStart "-31"; chr12 rmsk exon 9910913 9911410 1999 - . gene_id "HERVI_12p13.31"; transcript_id "HERVI_12p13.31"; locus "HERVI_12p13.31"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0025"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_12p13.31c ### chr12 rmsk gene 9911413 9912864 . - . gene_id "MER61_12p13.31c"; transcript_id "MER61_12p13.31c"; locus "MER61_12p13.31c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0276"; model_cov "1189"; model_pct "22.8"; chr12 rmsk exon 9911413 9911838 2432 - . gene_id "MER61_12p13.31c"; transcript_id "MER61_12p13.31c"; locus "MER61_12p13.31c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0276"; repClass "LTR"; repEnd "1788"; repFamily "ERV1"; repLeft "1304"; repStart "-3429"; chr12 rmsk exon 9911862 9912541 2990 - . gene_id "MER61_12p13.31c"; transcript_id "MER61_12p13.31c"; locus "MER61_12p13.31c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0276"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "2"; repStart "-4510"; chr12 rmsk exon 9912543 9912864 1330 - . gene_id "MER61_12p13.31c"; transcript_id "MER61_12p13.31c"; locus "MER61_12p13.31c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0276"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_12p13.31e ### chr12 rmsk gene 9962437 9968690 . - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0912"; model_cov "5619"; model_pct "72.9"; chr12 rmsk exon 9962437 9962843 2578 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 9962844 9964009 7651 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr12 rmsk exon 9963983 9964588 3978 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr12 rmsk exon 9964585 9964760 1065 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chr12 rmsk exon 9964763 9965267 3038 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 9965258 9965407 859 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 9965387 9968267 14058 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 9968270 9968690 2568 - . gene_id "HERVH_12p13.31e"; transcript_id "HERVH_12p13.31e"; locus "HERVH_12p13.31e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0912"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4B_12p13.31c ### chr12 rmsk gene 9984964 9987795 . - . gene_id "MER4B_12p13.31c"; transcript_id "MER4B_12p13.31c"; locus "MER4B_12p13.31c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0331"; model_cov "2269"; model_pct "33.6"; chr12 rmsk exon 9984964 9985321 781 - . gene_id "MER4B_12p13.31c"; transcript_id "MER4B_12p13.31c"; locus "MER4B_12p13.31c"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0331"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "-117"; repStart "-220"; chr12 rmsk exon 9985323 9986528 8247 - . gene_id "MER4B_12p13.31c"; transcript_id "MER4B_12p13.31c"; locus "MER4B_12p13.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0331"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5529"; repStart "0"; chr12 rmsk exon 9986820 9987795 8247 - . gene_id "MER4B_12p13.31c"; transcript_id "MER4B_12p13.31c"; locus "MER4B_12p13.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0331"; repClass "LTR"; repEnd "5528"; repFamily "ERV1"; repLeft "4488"; repStart "-1230"; ### HERVL40_12p13.2a ### chr12 rmsk gene 10277960 10278528 . + . gene_id "HERVL40_12p13.2a"; transcript_id "HERVL40_12p13.2a"; locus "HERVL40_12p13.2a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0306"; model_cov "582"; model_pct "10.5"; chr12 rmsk exon 10277960 10278528 2511 + . gene_id "HERVL40_12p13.2a"; transcript_id "HERVL40_12p13.2a"; locus "HERVL40_12p13.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0306"; repClass "LTR"; repEnd "4020"; repFamily "ERVL"; repLeft "-1510"; repStart "3438"; ### HERVH_12p13.2a ### chr12 rmsk gene 10332976 10338643 . - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0913"; model_cov "4898"; model_pct "63.5"; chr12 rmsk exon 10332976 10333428 3459 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 10333429 10333805 2415 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 10333806 10334021 1376 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 10334023 10334620 2898 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 10334623 10335118 3207 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr12 rmsk exon 10335118 10335262 720 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 10335257 10338190 18861 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr12 rmsk exon 10338193 10338643 3387 - . gene_id "HERVH_12p13.2a"; transcript_id "HERVH_12p13.2a"; locus "HERVH_12p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0913"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVIP10FH_12p13.2 ### chr12 rmsk gene 10362141 10363332 . + . gene_id "HERVIP10FH_12p13.2"; transcript_id "HERVIP10FH_12p13.2"; locus "HERVIP10FH_12p13.2"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0121"; model_cov "781"; model_pct "15.3"; chr12 rmsk exon 10362141 10362659 3753 + . gene_id "HERVIP10FH_12p13.2"; transcript_id "HERVIP10FH_12p13.2"; locus "HERVIP10FH_12p13.2"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0121"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 10362660 10363332 2412 + . gene_id "HERVIP10FH_12p13.2"; transcript_id "HERVIP10FH_12p13.2"; locus "HERVIP10FH_12p13.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0121"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "-4320"; repStart "1"; ### HERVIP10F_12p13.2 ### chr12 rmsk gene 10369013 10372258 . + . gene_id "HERVIP10F_12p13.2"; transcript_id "HERVIP10F_12p13.2"; locus "HERVIP10F_12p13.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0080"; model_cov "1983"; model_pct "25.6"; chr12 rmsk exon 10369013 10371485 4917 + . gene_id "HERVIP10F_12p13.2"; transcript_id "HERVIP10F_12p13.2"; locus "HERVIP10F_12p13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0080"; repClass "LTR"; repEnd "7146"; repFamily "ERV1"; repLeft "-591"; repStart "5405"; chr12 rmsk exon 10371503 10371737 478 + . gene_id "HERVIP10F_12p13.2"; transcript_id "HERVIP10F_12p13.2"; locus "HERVIP10F_12p13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0080"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "7493"; chr12 rmsk exon 10371741 10372258 4025 + . gene_id "HERVIP10F_12p13.2"; transcript_id "HERVIP10F_12p13.2"; locus "HERVIP10F_12p13.2"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10F-int_0080"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_12p13.2 ### chr12 rmsk gene 10653837 10661086 . + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0384"; model_cov "5492"; model_pct "92.4"; chr12 rmsk exon 10653837 10654459 4280 + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0384"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 10654460 10655030 3147 + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0384"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "1"; chr12 rmsk exon 10655023 10655974 29469 + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0384"; repClass "LTR"; repEnd "2104"; repFamily "ERV1"; repLeft "-3842"; repStart "1083"; chr12 rmsk exon 10656655 10660474 29469 + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0384"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2105"; chr12 rmsk exon 10660475 10661086 4100 + . gene_id "MER41_12p13.2"; transcript_id "MER41_12p13.2"; locus "MER41_12p13.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0384"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_12p13.2a ### chr12 rmsk gene 10684437 10691402 . - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1247"; model_cov "4661"; model_pct "81.6"; chr12 rmsk exon 10684437 10684878 1753 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "-34"; repStart "-66"; chr12 rmsk exon 10684879 10685107 3666 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5487"; repStart "0"; chr12 rmsk exon 10685447 10685907 3666 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "5006"; repStart "-228"; chr12 rmsk exon 10685906 10687208 7459 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "2635"; repStart "-1695"; chr12 rmsk exon 10688198 10690704 13896 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "108"; repStart "-3082"; chr12 rmsk exon 10690765 10690811 295 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "47"; repFamily "ERVL"; repLeft "1"; repStart "-5667"; chr12 rmsk exon 10690816 10690890 363 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "443"; repStart "-4"; chr12 rmsk exon 10690968 10691402 1711 - . gene_id "ERVLB4_12p13.2a"; transcript_id "ERVLB4_12p13.2a"; locus "ERVLB4_12p13.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1247"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "3"; repStart "-40"; ### ERVLB4_12p13.2b ### chr12 rmsk gene 10960321 10961256 . + . gene_id "ERVLB4_12p13.2b"; transcript_id "ERVLB4_12p13.2b"; locus "ERVLB4_12p13.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1248"; model_cov "1161"; model_pct "20.3"; chr12 rmsk exon 10960321 10961256 994 + . gene_id "ERVLB4_12p13.2b"; transcript_id "ERVLB4_12p13.2b"; locus "ERVLB4_12p13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1248"; repClass "LTR"; repEnd "3297"; repFamily "ERVL"; repLeft "-2417"; repStart "2136"; ### ERVLE_12p13.2a ### chr12 rmsk gene 10981067 10983237 . + . gene_id "ERVLE_12p13.2a"; transcript_id "ERVLE_12p13.2a"; locus "ERVLE_12p13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2653"; model_cov "1496"; model_pct "26.4"; chr12 rmsk exon 10981067 10981334 341 + . gene_id "ERVLE_12p13.2a"; transcript_id "ERVLE_12p13.2a"; locus "ERVLE_12p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2653"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3714"; repStart "1682"; chr12 rmsk exon 10981997 10983237 1000 + . gene_id "ERVLE_12p13.2a"; transcript_id "ERVLE_12p13.2a"; locus "ERVLE_12p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2653"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "-2434"; repStart "2008"; ### ERVL_12p13.2 ### chr12 rmsk gene 10992080 10993955 . + . gene_id "ERVL_12p13.2"; transcript_id "ERVL_12p13.2"; locus "ERVL_12p13.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0319"; model_cov "1532"; model_pct "26.6"; chr12 rmsk exon 10992080 10992404 1198 + . gene_id "ERVL_12p13.2"; transcript_id "ERVL_12p13.2"; locus "ERVL_12p13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0319"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "-3675"; repStart "1762"; chr12 rmsk exon 10992713 10993955 1198 + . gene_id "ERVL_12p13.2"; transcript_id "ERVL_12p13.2"; locus "ERVL_12p13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0319"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "-2419"; repStart "2126"; ### HERVL_12p13.2a ### chr12 rmsk gene 11016701 11018258 . + . gene_id "HERVL_12p13.2a"; transcript_id "HERVL_12p13.2a"; locus "HERVL_12p13.2a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0947"; model_cov "923"; model_pct "16.3"; chr12 rmsk exon 11016701 11017238 755 + . gene_id "HERVL_12p13.2a"; transcript_id "HERVL_12p13.2a"; locus "HERVL_12p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0947"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3006"; repStart "2082"; chr12 rmsk exon 11017829 11017917 273 + . gene_id "HERVL_12p13.2a"; transcript_id "HERVL_12p13.2a"; locus "HERVL_12p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0947"; repClass "LTR"; repEnd "2959"; repFamily "ERVL"; repLeft "-2695"; repStart "2871"; chr12 rmsk exon 11017988 11018258 403 + . gene_id "HERVL_12p13.2a"; transcript_id "HERVL_12p13.2a"; locus "HERVL_12p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0947"; repClass "LTR"; repEnd "3235"; repFamily "ERVL"; repLeft "-2419"; repStart "2966"; ### ERVLB4_12p13.2c ### chr12 rmsk gene 11026347 11027868 . + . gene_id "ERVLB4_12p13.2c"; transcript_id "ERVLB4_12p13.2c"; locus "ERVLB4_12p13.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1249"; model_cov "1406"; model_pct "24.6"; chr12 rmsk exon 11026347 11026982 1594 + . gene_id "ERVLB4_12p13.2c"; transcript_id "ERVLB4_12p13.2c"; locus "ERVLB4_12p13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1249"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-3006"; repStart "1887"; chr12 rmsk exon 11027269 11027868 1594 + . gene_id "ERVLB4_12p13.2c"; transcript_id "ERVLB4_12p13.2c"; locus "ERVLB4_12p13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1249"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-2420"; repStart "2709"; ### ERVLB4_12p13.2d ### chr12 rmsk gene 11057375 11058810 . + . gene_id "ERVLB4_12p13.2d"; transcript_id "ERVLB4_12p13.2d"; locus "ERVLB4_12p13.2d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1250"; model_cov "1185"; model_pct "20.7"; chr12 rmsk exon 11057375 11057968 1550 + . gene_id "ERVLB4_12p13.2d"; transcript_id "ERVLB4_12p13.2d"; locus "ERVLB4_12p13.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1250"; repClass "LTR"; repEnd "2722"; repFamily "ERVL"; repLeft "-2992"; repStart "2096"; chr12 rmsk exon 11058239 11058810 1550 + . gene_id "ERVLB4_12p13.2d"; transcript_id "ERVLB4_12p13.2d"; locus "ERVLB4_12p13.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1250"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-2432"; repStart "2723"; ### HERVL_12p13.2b ### chr12 rmsk gene 11070735 11073773 . + . gene_id "HERVL_12p13.2b"; transcript_id "HERVL_12p13.2b"; locus "HERVL_12p13.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0948"; model_cov "901"; model_pct "15.9"; chr12 rmsk exon 11070735 11070800 289 + . gene_id "HERVL_12p13.2b"; transcript_id "HERVL_12p13.2b"; locus "HERVL_12p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0948"; repClass "LTR"; repEnd "1959"; repFamily "ERVL"; repLeft "-3695"; repStart "1894"; chr12 rmsk exon 11072348 11072891 601 + . gene_id "HERVL_12p13.2b"; transcript_id "HERVL_12p13.2b"; locus "HERVL_12p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0948"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3006"; repStart "2082"; chr12 rmsk exon 11073434 11073567 298 + . gene_id "HERVL_12p13.2b"; transcript_id "HERVL_12p13.2b"; locus "HERVL_12p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0948"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "-2693"; repStart "2827"; chr12 rmsk exon 11073636 11073773 502 + . gene_id "HERVL_12p13.2b"; transcript_id "HERVL_12p13.2b"; locus "HERVL_12p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0948"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "-2550"; repStart "2968"; ### ERVLB4_12p13.2e ### chr12 rmsk gene 11087471 11088945 . + . gene_id "ERVLB4_12p13.2e"; transcript_id "ERVLB4_12p13.2e"; locus "ERVLB4_12p13.2e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1251"; model_cov "1197"; model_pct "20.9"; chr12 rmsk exon 11087471 11088058 1586 + . gene_id "ERVLB4_12p13.2e"; transcript_id "ERVLB4_12p13.2e"; locus "ERVLB4_12p13.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1251"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-3006"; repStart "2096"; chr12 rmsk exon 11088345 11088945 1586 + . gene_id "ERVLB4_12p13.2e"; transcript_id "ERVLB4_12p13.2e"; locus "ERVLB4_12p13.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1251"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-2420"; repStart "2709"; ### ERVLE_12p13.2b ### chr12 rmsk gene 11129286 11130617 . + . gene_id "ERVLE_12p13.2b"; transcript_id "ERVLE_12p13.2b"; locus "ERVLE_12p13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2654"; model_cov "1069"; model_pct "18.9"; chr12 rmsk exon 11129286 11129868 1573 + . gene_id "ERVLE_12p13.2b"; transcript_id "ERVLE_12p13.2b"; locus "ERVLE_12p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2654"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3019"; repStart "2031"; chr12 rmsk exon 11130155 11130617 1573 + . gene_id "ERVLE_12p13.2b"; transcript_id "ERVLE_12p13.2b"; locus "ERVLE_12p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2654"; repClass "LTR"; repEnd "3101"; repFamily "ERVL"; repLeft "-2566"; repStart "2649"; ### ERVLE_12p13.2c ### chr12 rmsk gene 11152956 11153917 . + . gene_id "ERVLE_12p13.2c"; transcript_id "ERVLE_12p13.2c"; locus "ERVLE_12p13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2655"; model_cov "1031"; model_pct "18.2"; chr12 rmsk exon 11152956 11153917 3068 + . gene_id "ERVLE_12p13.2c"; transcript_id "ERVLE_12p13.2c"; locus "ERVLE_12p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2655"; repClass "LTR"; repEnd "1036"; repFamily "ERVL"; repLeft "-4631"; repStart "5"; ### HERVL40_12p13.2b ### chr12 rmsk gene 11370765 11372249 . - . gene_id "HERVL40_12p13.2b"; transcript_id "HERVL40_12p13.2b"; locus "HERVL40_12p13.2b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0312"; model_cov "577"; model_pct "10.4"; chr12 rmsk exon 11370765 11370840 300 - . gene_id "HERVL40_12p13.2b"; transcript_id "HERVL40_12p13.2b"; locus "HERVL40_12p13.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0312"; repClass "LTR"; repEnd "2127"; repFamily "ERVL"; repLeft "2051"; repStart "-3403"; chr12 rmsk exon 11371674 11372008 331 - . gene_id "HERVL40_12p13.2b"; transcript_id "HERVL40_12p13.2b"; locus "HERVL40_12p13.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0312"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "1066"; repStart "-4123"; chr12 rmsk exon 11372091 11372249 363 - . gene_id "HERVL40_12p13.2b"; transcript_id "HERVL40_12p13.2b"; locus "HERVL40_12p13.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0312"; repClass "LTR"; repEnd "269"; repFamily "ERVL"; repLeft "109"; repStart "-5261"; ### HERVH_12p13.2b ### chr12 rmsk gene 11462169 11468020 . - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0914"; model_cov "5061"; model_pct "65.6"; chr12 rmsk exon 11462169 11462619 3710 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 11462620 11462996 2478 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 11462995 11463210 1398 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 11463212 11463874 4413 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 11463877 11464377 3428 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 11464368 11467568 21122 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr12 rmsk exon 11467571 11468020 3590 - . gene_id "HERVH_12p13.2b"; transcript_id "HERVH_12p13.2b"; locus "HERVH_12p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0914"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_12p13.2c ### chr12 rmsk gene 11609767 11615294 . - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0915"; model_cov "4908"; model_pct "63.6"; chr12 rmsk exon 11609767 11610195 3515 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 11610196 11610542 1994 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 11610541 11610756 1491 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 11610758 11611400 4239 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 11611403 11611896 3519 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr12 rmsk exon 11611896 11612043 848 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 11612023 11614836 16642 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 11614839 11615294 3645 - . gene_id "HERVH_12p13.2c"; transcript_id "HERVH_12p13.2c"; locus "HERVH_12p13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0915"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_12p13.2d ### chr12 rmsk gene 11635882 11641376 . - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2656"; model_cov "3611"; model_pct "63.7"; chr12 rmsk exon 11635882 11635987 5123 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "5634"; repFamily "ERVL"; repLeft "5519"; repStart "-33"; chr12 rmsk exon 11636477 11637057 5123 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "5518"; repFamily "ERVL"; repLeft "4910"; repStart "-149"; chr12 rmsk exon 11637415 11637708 5123 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "4909"; repFamily "ERVL"; repLeft "4614"; repStart "-758"; chr12 rmsk exon 11638008 11638313 5123 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "4306"; repStart "-1054"; chr12 rmsk exon 11638283 11639370 3708 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "3739"; repFamily "ERVL"; repLeft "2519"; repStart "-1928"; chr12 rmsk exon 11639381 11639532 3721 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "2277"; repFamily "ERVL"; repLeft "2126"; repStart "-3390"; chr12 rmsk exon 11639897 11640436 3721 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "2125"; repFamily "ERVL"; repLeft "1567"; repStart "-3542"; chr12 rmsk exon 11640699 11640968 3721 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "1566"; repFamily "ERVL"; repLeft "1277"; repStart "-4101"; chr12 rmsk exon 11641255 11641376 320 - . gene_id "ERVLE_12p13.2d"; transcript_id "ERVLE_12p13.2d"; locus "ERVLE_12p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2656"; repClass "LTR"; repEnd "1209"; repFamily "ERVL"; repLeft "1141"; repStart "-4458"; ### HERVH_12p13.2d ### chr12 rmsk gene 12058472 12064073 . + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0916"; model_cov "4916"; model_pct "63.7"; chr12 rmsk exon 12058472 12058782 2215 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "125"; chr12 rmsk exon 12058785 12061803 20842 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 12061783 12061930 931 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 12061921 12062423 3512 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr12 rmsk exon 12062426 12063088 4487 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 12063090 12063305 1424 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 12063304 12063681 2409 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr12 rmsk exon 12063682 12064073 2418 + . gene_id "HERVH_12p13.2d"; transcript_id "HERVH_12p13.2d"; locus "HERVH_12p13.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0916"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_12p13.1 ### chr12 rmsk gene 13241793 13248674 . - . gene_id "ERVLB4_12p13.1"; transcript_id "ERVLB4_12p13.1"; locus "ERVLB4_12p13.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1252"; model_cov "5594"; model_pct "97.9"; chr12 rmsk exon 13241793 13242388 2790 - . gene_id "ERVLB4_12p13.1"; transcript_id "ERVLB4_12p13.1"; locus "ERVLB4_12p13.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1252"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "6"; repStart "0"; chr12 rmsk exon 13242396 13243579 14255 - . gene_id "ERVLB4_12p13.1"; transcript_id "ERVLB4_12p13.1"; locus "ERVLB4_12p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1252"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4450"; repStart "0"; chr12 rmsk exon 13244366 13245789 14255 - . gene_id "ERVLB4_12p13.1"; transcript_id "ERVLB4_12p13.1"; locus "ERVLB4_12p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1252"; repClass "LTR"; repEnd "4462"; repFamily "ERVL"; repLeft "3004"; repStart "-1252"; chr12 rmsk exon 13245787 13248674 17557 - . gene_id "ERVLB4_12p13.1"; transcript_id "ERVLB4_12p13.1"; locus "ERVLB4_12p13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1252"; repClass "LTR"; repEnd "2873"; repFamily "ERVL"; repLeft "1"; repStart "-2841"; ### HERVH_12p13.1a ### chr12 rmsk gene 13259639 13265519 . - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0917"; model_cov "5261"; model_pct "68.2"; chr12 rmsk exon 13259639 13260028 2659 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 13260029 13260401 2310 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 13260402 13260617 1441 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 13260619 13261281 4444 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 13261284 13265117 23959 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr12 rmsk exon 13265120 13265519 2841 - . gene_id "HERVH_12p13.1a"; transcript_id "HERVH_12p13.1a"; locus "HERVH_12p13.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0917"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_12p13.1 ### chr12 rmsk gene 14205806 14208695 . - . gene_id "ERV316A3_12p13.1"; transcript_id "ERV316A3_12p13.1"; locus "ERV316A3_12p13.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2046"; model_cov "812"; model_pct "15.5"; chr12 rmsk exon 14205806 14206243 1215 - . gene_id "ERV316A3_12p13.1"; transcript_id "ERV316A3_12p13.1"; locus "ERV316A3_12p13.1"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2046"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 14206324 14206430 987 - . gene_id "ERV316A3_12p13.1"; transcript_id "ERV316A3_12p13.1"; locus "ERV316A3_12p13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2046"; repClass "LTR"; repEnd "5094"; repFamily "ERVL"; repLeft "4977"; repStart "-132"; chr12 rmsk exon 14207422 14207725 987 - . gene_id "ERV316A3_12p13.1"; transcript_id "ERV316A3_12p13.1"; locus "ERV316A3_12p13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2046"; repClass "LTR"; repEnd "4976"; repFamily "ERVL"; repLeft "4610"; repStart "-250"; chr12 rmsk exon 14208350 14208695 991 - . gene_id "ERV316A3_12p13.1"; transcript_id "ERV316A3_12p13.1"; locus "ERV316A3_12p13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2046"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "4139"; repStart "-758"; ### HERVW_12p13.1 ### chr12 rmsk gene 14216760 14221108 . + . gene_id "HERVW_12p13.1"; transcript_id "HERVW_12p13.1"; locus "HERVW_12p13.1"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0224"; model_cov "4986"; model_pct "57.8"; chr12 rmsk exon 14216760 14220395 14681 + . gene_id "HERVW_12p13.1"; transcript_id "HERVW_12p13.1"; locus "HERVW_12p13.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0224"; repClass "LTR"; repEnd "4259"; repFamily "ERV1"; repLeft "-4367"; repStart "1"; chr12 rmsk exon 14220389 14221108 3452 + . gene_id "HERVW_12p13.1"; transcript_id "HERVW_12p13.1"; locus "HERVW_12p13.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0224"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7898"; ### ERVLE_12p13.1a ### chr12 rmsk gene 14224922 14226766 . + . gene_id "ERVLE_12p13.1a"; transcript_id "ERVLE_12p13.1a"; locus "ERVLE_12p13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2657"; model_cov "1771"; model_pct "31.3"; chr12 rmsk exon 14224922 14225344 1522 + . gene_id "ERVLE_12p13.1a"; transcript_id "ERVLE_12p13.1a"; locus "ERVLE_12p13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2657"; repClass "LTR"; repEnd "2608"; repFamily "ERVL"; repLeft "-3059"; repStart "2088"; chr12 rmsk exon 14225718 14226766 1605 + . gene_id "ERVLE_12p13.1a"; transcript_id "ERVLE_12p13.1a"; locus "ERVLE_12p13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2657"; repClass "LTR"; repEnd "3752"; repFamily "ERVL"; repLeft "-1915"; repStart "2501"; ### HERVH_12p13.1b ### chr12 rmsk gene 14231407 14237087 . + . gene_id "HERVH_12p13.1b"; transcript_id "HERVH_12p13.1b"; locus "HERVH_12p13.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0918"; model_cov "5571"; model_pct "72.2"; chr12 rmsk exon 14231407 14234055 14041 + . gene_id "HERVH_12p13.1b"; transcript_id "HERVH_12p13.1b"; locus "HERVH_12p13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0918"; repClass "LTR"; repEnd "3067"; repFamily "ERV1"; repLeft "-4646"; repStart "111"; chr12 rmsk exon 14234027 14236630 14602 + . gene_id "HERVH_12p13.1b"; transcript_id "HERVH_12p13.1b"; locus "HERVH_12p13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0918"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5098"; chr12 rmsk exon 14236679 14236782 283 + . gene_id "HERVH_12p13.1b"; transcript_id "HERVH_12p13.1b"; locus "HERVH_12p13.1b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0918"; repClass "LTR"; repEnd "283"; repFamily "ERV1"; repLeft "-189"; repStart "158"; chr12 rmsk exon 14236785 14237087 1569 + . gene_id "HERVH_12p13.1b"; transcript_id "HERVH_12p13.1b"; locus "HERVH_12p13.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0918"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "163"; ### HERVL_12p13.1a ### chr12 rmsk gene 14292854 14300222 . - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0949"; model_cov "5649"; model_pct "99.9"; chr12 rmsk exon 14292854 14293284 3013 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 14293286 14294002 43062 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "4944"; repStart "-1"; chr12 rmsk exon 14294295 14298192 43062 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "1006"; repStart "-711"; chr12 rmsk exon 14298499 14299164 43062 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "1005"; repFamily "ERVL"; repLeft "351"; repStart "-4649"; chr12 rmsk exon 14299429 14299779 43062 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "1"; repStart "-5304"; chr12 rmsk exon 14299780 14300222 2839 - . gene_id "HERVL_12p13.1a"; transcript_id "HERVL_12p13.1a"; locus "HERVL_12p13.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0949"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_12p13.1b ### chr12 rmsk gene 14331176 14338695 . + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0950"; model_cov "5651"; model_pct "99.9"; chr12 rmsk exon 14331176 14331557 2828 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr12 rmsk exon 14331775 14332771 14668 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "1005"; repFamily "ERVL"; repLeft "-4649"; repStart "1"; chr12 rmsk exon 14333071 14335364 39386 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "-2371"; repStart "1006"; chr12 rmsk exon 14335675 14338046 39386 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3284"; chr12 rmsk exon 14338047 14338445 2413 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "-28"; repStart "1"; chr12 rmsk exon 14338645 14338695 318 + . gene_id "HERVL_12p13.1b"; transcript_id "HERVL_12p13.1b"; locus "HERVL_12p13.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0950"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "391"; ### ERVLE_12p13.1b ### chr12 rmsk gene 14338698 14340283 . + . gene_id "ERVLE_12p13.1b"; transcript_id "ERVLE_12p13.1b"; locus "ERVLE_12p13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2660"; model_cov "1646"; model_pct "29.0"; chr12 rmsk exon 14338698 14339211 2078 + . gene_id "ERVLE_12p13.1b"; transcript_id "ERVLE_12p13.1b"; locus "ERVLE_12p13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2660"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "-2279"; repStart "2835"; chr12 rmsk exon 14339241 14340283 3549 + . gene_id "ERVLE_12p13.1b"; transcript_id "ERVLE_12p13.1b"; locus "ERVLE_12p13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2660"; repClass "LTR"; repEnd "4543"; repFamily "ERVL"; repLeft "-1124"; repStart "3450"; ### HERVL_12p13.1c ### chr12 rmsk gene 14482264 14494650 . - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; category "mergeable*"; intModel "HERVL-int"; locid "HERVL-int_0951"; model_cov "5551"; model_pct "98.2"; chr12 rmsk exon 14482264 14482762 2086 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-109"; repStart "-10"; chr12 rmsk exon 14482763 14484428 12663 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3958"; repStart "0"; chr12 rmsk exon 14484428 14488149 23578 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "3856"; repFamily "ERVL"; repLeft "1"; repStart "-1798"; chr12 rmsk exon 14488152 14488190 270 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "400"; repStart "-6"; chr12 rmsk exon 14488250 14488650 2528 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr12 rmsk exon 14488651 14494248 41629 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 14494574 14494650 2770 - . gene_id "HERVL_12p13.1c"; transcript_id "HERVL_12p13.1c"; locus "HERVL_12p13.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0951"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "342"; repStart "-45"; ### HERVH_12p12.3a ### chr12 rmsk gene 14705421 14710640 . - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0919"; model_cov "4224"; model_pct "54.8"; chr12 rmsk exon 14705421 14705902 3606 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 14705903 14706281 2449 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 14706280 14706480 1364 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr12 rmsk exon 14706509 14707072 2504 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4664"; repStart "-2564"; chr12 rmsk exon 14707063 14707207 874 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 14707187 14710156 20819 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 14710159 14710640 3645 - . gene_id "HERVH_12p12.3a"; transcript_id "HERVH_12p12.3a"; locus "HERVH_12p12.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0919"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_12p12.3a ### chr12 rmsk gene 14876490 14877641 . - . gene_id "ERV316A3_12p12.3a"; transcript_id "ERV316A3_12p12.3a"; locus "ERV316A3_12p12.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2047"; model_cov "650"; model_pct "12.4"; chr12 rmsk exon 14876490 14876688 505 - . gene_id "ERV316A3_12p12.3a"; transcript_id "ERV316A3_12p12.3a"; locus "ERV316A3_12p12.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2047"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "1"; repStart "-220"; chr12 rmsk exon 14876933 14877641 998 - . gene_id "ERV316A3_12p12.3a"; transcript_id "ERV316A3_12p12.3a"; locus "ERV316A3_12p12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2047"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "4469"; repStart "-107"; ### ERVLB4_12p12.3a ### chr12 rmsk gene 14993640 14995697 . + . gene_id "ERVLB4_12p12.3a"; transcript_id "ERVLB4_12p12.3a"; locus "ERVLB4_12p12.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1254"; model_cov "1329"; model_pct "23.3"; chr12 rmsk exon 14993640 14994208 1790 + . gene_id "ERVLB4_12p12.3a"; transcript_id "ERVLB4_12p12.3a"; locus "ERVLB4_12p12.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1254"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 14994209 14994537 6645 + . gene_id "ERVLB4_12p12.3a"; transcript_id "ERVLB4_12p12.3a"; locus "ERVLB4_12p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1254"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-5378"; repStart "1"; chr12 rmsk exon 14994694 14995697 6645 + . gene_id "ERVLB4_12p12.3a"; transcript_id "ERVLB4_12p12.3a"; locus "ERVLB4_12p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1254"; repClass "LTR"; repEnd "1331"; repFamily "ERVL"; repLeft "-4383"; repStart "337"; ### HUERSP1_12p12.3a ### chr12 rmsk gene 15029534 15031874 . - . gene_id "HUERSP1_12p12.3a"; transcript_id "HUERSP1_12p12.3a"; locus "HUERSP1_12p12.3a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0143"; model_cov "1602"; model_pct "25.6"; chr12 rmsk exon 15029534 15030268 3397 - . gene_id "HUERSP1_12p12.3a"; transcript_id "HUERSP1_12p12.3a"; locus "HUERSP1_12p12.3a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0143"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 15030319 15031874 23579 - . gene_id "HUERSP1_12p12.3a"; transcript_id "HUERSP1_12p12.3a"; locus "HUERSP1_12p12.3a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0143"; repClass "LTR"; repEnd "6241"; repFamily "ERV1"; repLeft "4639"; repStart "-22"; ### HUERSP1_12p12.3b ### chr12 rmsk gene 15031918 15035436 . - . gene_id "HUERSP1_12p12.3b"; transcript_id "HUERSP1_12p12.3b"; locus "HUERSP1_12p12.3b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0144"; model_cov "2889"; model_pct "46.1"; chr12 rmsk exon 15031918 15033799 23579 - . gene_id "HUERSP1_12p12.3b"; transcript_id "HUERSP1_12p12.3b"; locus "HUERSP1_12p12.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0144"; repClass "LTR"; repEnd "6241"; repFamily "ERV1"; repLeft "4300"; repStart "-22"; chr12 rmsk exon 15034517 15035436 17447 - . gene_id "HUERSP1_12p12.3b"; transcript_id "HUERSP1_12p12.3b"; locus "HUERSP1_12p12.3b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0144"; repClass "LTR"; repEnd "2699"; repFamily "ERV1"; repLeft "1751"; repStart "-3564"; ### HUERSP1_12p12.3c ### chr12 rmsk gene 15035535 15037958 . - . gene_id "HUERSP1_12p12.3c"; transcript_id "HUERSP1_12p12.3c"; locus "HUERSP1_12p12.3c"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0145"; model_cov "1749"; model_pct "27.9"; chr12 rmsk exon 15035535 15037227 17447 - . gene_id "HUERSP1_12p12.3c"; transcript_id "HUERSP1_12p12.3c"; locus "HUERSP1_12p12.3c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0145"; repClass "LTR"; repEnd "2699"; repFamily "ERV1"; repLeft "950"; repStart "-3564"; chr12 rmsk exon 15037228 15037958 3228 - . gene_id "HUERSP1_12p12.3c"; transcript_id "HUERSP1_12p12.3c"; locus "HUERSP1_12p12.3c"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0145"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_12p12.3a ### chr12 rmsk gene 15292046 15292740 . + . gene_id "ERVLE_12p12.3a"; transcript_id "ERVLE_12p12.3a"; locus "ERVLE_12p12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2662"; model_cov "736"; model_pct "13.0"; chr12 rmsk exon 15292046 15292429 957 + . gene_id "ERVLE_12p12.3a"; transcript_id "ERVLE_12p12.3a"; locus "ERVLE_12p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2662"; repClass "LTR"; repEnd "2481"; repFamily "ERVL"; repLeft "-3186"; repStart "2092"; chr12 rmsk exon 15292408 15292740 761 + . gene_id "ERVLE_12p12.3a"; transcript_id "ERVLE_12p12.3a"; locus "ERVLE_12p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2662"; repClass "LTR"; repEnd "4652"; repFamily "ERVL"; repLeft "-1015"; repStart "4305"; ### ERVLE_12p12.3b ### chr12 rmsk gene 15391303 15394899 . - . gene_id "ERVLE_12p12.3b"; transcript_id "ERVLE_12p12.3b"; locus "ERVLE_12p12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2663"; model_cov "2722"; model_pct "48.0"; chr12 rmsk exon 15391303 15392438 2837 - . gene_id "ERVLE_12p12.3b"; transcript_id "ERVLE_12p12.3b"; locus "ERVLE_12p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2663"; repClass "LTR"; repEnd "5273"; repFamily "ERVL"; repLeft "4104"; repStart "-394"; chr12 rmsk exon 15392751 15393488 2837 - . gene_id "ERVLE_12p12.3b"; transcript_id "ERVLE_12p12.3b"; locus "ERVLE_12p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2663"; repClass "LTR"; repEnd "4103"; repFamily "ERVL"; repLeft "3322"; repStart "-1564"; chr12 rmsk exon 15393682 15393754 956 - . gene_id "ERVLE_12p12.3b"; transcript_id "ERVLE_12p12.3b"; locus "ERVLE_12p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2663"; repClass "LTR"; repEnd "2753"; repFamily "ERVL"; repLeft "2678"; repStart "-2914"; chr12 rmsk exon 15394198 15394899 956 - . gene_id "ERVLE_12p12.3b"; transcript_id "ERVLE_12p12.3b"; locus "ERVLE_12p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2663"; repClass "LTR"; repEnd "2677"; repFamily "ERVL"; repLeft "1980"; repStart "-2990"; ### ERVLE_12p12.3c ### chr12 rmsk gene 16313812 16317655 . + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2664"; model_cov "2526"; model_pct "44.6"; chr12 rmsk exon 16313812 16314087 929 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4977"; repStart "393"; chr12 rmsk exon 16314447 16315361 929 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "1607"; repFamily "ERVL"; repLeft "-4060"; repStart "691"; chr12 rmsk exon 16315435 16315936 1032 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "-1374"; repStart "3633"; chr12 rmsk exon 16316014 16316038 552 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "4317"; repFamily "ERVL"; repLeft "-1350"; repStart "4295"; chr12 rmsk exon 16316849 16317097 552 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "-1090"; repStart "4318"; chr12 rmsk exon 16317296 16317655 965 + . gene_id "ERVLE_12p12.3c"; transcript_id "ERVLE_12p12.3c"; locus "ERVLE_12p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2664"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-431"; repStart "4864"; ### ERV316A3_12p12.3b ### chr12 rmsk gene 16420464 16422617 . - . gene_id "ERV316A3_12p12.3b"; transcript_id "ERV316A3_12p12.3b"; locus "ERV316A3_12p12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2048"; model_cov "1466"; model_pct "28.1"; chr12 rmsk exon 16420464 16420835 1411 - . gene_id "ERV316A3_12p12.3b"; transcript_id "ERV316A3_12p12.3b"; locus "ERV316A3_12p12.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2048"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "49"; repStart "-2"; chr12 rmsk exon 16420950 16421039 270 - . gene_id "ERV316A3_12p12.3b"; transcript_id "ERV316A3_12p12.3b"; locus "ERV316A3_12p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2048"; repClass "LTR"; repEnd "5126"; repFamily "ERVL"; repLeft "5036"; repStart "-100"; chr12 rmsk exon 16421215 16422188 1942 - . gene_id "ERV316A3_12p12.3b"; transcript_id "ERV316A3_12p12.3b"; locus "ERV316A3_12p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2048"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "3811"; repStart "-413"; chr12 rmsk exon 16422201 16422617 443 - . gene_id "ERV316A3_12p12.3b"; transcript_id "ERV316A3_12p12.3b"; locus "ERV316A3_12p12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2048"; repClass "LTR"; repEnd "3342"; repFamily "ERVL"; repLeft "2968"; repStart "-1884"; ### ERV316A3_12p12.3c ### chr12 rmsk gene 16443828 16447656 . - . gene_id "ERV316A3_12p12.3c"; transcript_id "ERV316A3_12p12.3c"; locus "ERV316A3_12p12.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2049"; model_cov "3777"; model_pct "72.3"; chr12 rmsk exon 16443828 16447656 7389 - . gene_id "ERV316A3_12p12.3c"; transcript_id "ERV316A3_12p12.3c"; locus "ERV316A3_12p12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2049"; repClass "LTR"; repEnd "4243"; repFamily "ERVL"; repLeft "466"; repStart "-983"; ### HERVH_12p12.3b ### chr12 rmsk gene 17021894 17027363 . - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0920"; model_cov "4747"; model_pct "61.5"; chr12 rmsk exon 17021894 17022322 3279 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 17022323 17022702 2555 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 17022701 17022902 1109 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5602"; repStart "-1894"; chr12 rmsk exon 17022910 17023571 4315 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr12 rmsk exon 17023567 17024077 3359 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr12 rmsk exon 17024068 17024215 907 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 17024210 17024592 2541 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2609"; repStart "-4726"; chr12 rmsk exon 17024586 17026932 12249 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "2444"; repFamily "ERV1"; repLeft "1"; repStart "-5269"; chr12 rmsk exon 17026935 17027363 3351 - . gene_id "HERVH_12p12.3b"; transcript_id "HERVH_12p12.3b"; locus "HERVH_12p12.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0920"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVE_12p12.3 ### chr12 rmsk gene 17296914 17304900 . + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0120"; model_cov "7236"; model_pct "92.6"; chr12 rmsk exon 17296914 17297350 1607 + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0120"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr12 rmsk exon 17297351 17298880 27957 + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0120"; repClass "LTR"; repEnd "1556"; repFamily "ERV1"; repLeft "-6257"; repStart "1"; chr12 rmsk exon 17298930 17302210 27957 + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0120"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "-2917"; repStart "1557"; chr12 rmsk exon 17302207 17304538 13050 + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0120"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "-2"; repStart "5469"; chr12 rmsk exon 17304542 17304900 1149 + . gene_id "HERVE_12p12.3"; transcript_id "HERVE_12p12.3"; locus "HERVE_12p12.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0120"; repClass "LTR"; repEnd "385"; repFamily "ERV1"; repLeft "-78"; repStart "5"; ### ERVLB4_12p12.3b ### chr12 rmsk gene 17428326 17429015 . + . gene_id "ERVLB4_12p12.3b"; transcript_id "ERVLB4_12p12.3b"; locus "ERVLB4_12p12.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1257"; model_cov "781"; model_pct "13.7"; chr12 rmsk exon 17428326 17428795 1207 + . gene_id "ERVLB4_12p12.3b"; transcript_id "ERVLB4_12p12.3b"; locus "ERVLB4_12p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1257"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "-4355"; repStart "864"; chr12 rmsk exon 17428792 17429015 416 + . gene_id "ERVLB4_12p12.3b"; transcript_id "ERVLB4_12p12.3b"; locus "ERVLB4_12p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1257"; repClass "LTR"; repEnd "2040"; repFamily "ERVL"; repLeft "-3674"; repStart "1754"; ### ERVLE_12p12.3d ### chr12 rmsk gene 17445665 17446449 . - . gene_id "ERVLE_12p12.3d"; transcript_id "ERVLE_12p12.3d"; locus "ERVLE_12p12.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2666"; model_cov "634"; model_pct "11.2"; chr12 rmsk exon 17445665 17445916 977 - . gene_id "ERVLE_12p12.3d"; transcript_id "ERVLE_12p12.3d"; locus "ERVLE_12p12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2666"; repClass "LTR"; repEnd "5239"; repFamily "ERVL"; repLeft "4845"; repStart "-428"; chr12 rmsk exon 17446201 17446449 977 - . gene_id "ERVLE_12p12.3d"; transcript_id "ERVLE_12p12.3d"; locus "ERVLE_12p12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2666"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "4783"; repStart "-644"; ### HERVH_12p12.3c ### chr12 rmsk gene 17469895 17474646 . + . gene_id "HERVH_12p12.3c"; transcript_id "HERVH_12p12.3c"; locus "HERVH_12p12.3c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0921"; model_cov "4282"; model_pct "55.5"; chr12 rmsk exon 17469895 17470313 2032 + . gene_id "HERVH_12p12.3c"; transcript_id "HERVH_12p12.3c"; locus "HERVH_12p12.3c"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0921"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 17470314 17472210 8339 + . gene_id "HERVH_12p12.3c"; transcript_id "HERVH_12p12.3c"; locus "HERVH_12p12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0921"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "-5454"; repStart "1"; chr12 rmsk exon 17472615 17474646 8127 + . gene_id "HERVH_12p12.3c"; transcript_id "HERVH_12p12.3c"; locus "HERVH_12p12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0921"; repClass "LTR"; repEnd "5414"; repFamily "ERV1"; repLeft "-2299"; repStart "3390"; ### PRIMA41_12p12.3 ### chr12 rmsk gene 17536466 17541873 . - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0096"; model_cov "4947"; model_pct "63.8"; chr12 rmsk exon 17536466 17537012 3490 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 17537042 17537580 3817 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "7753"; repFamily "ERV1"; repLeft "7199"; repStart "-3"; chr12 rmsk exon 17537572 17538802 9126 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "5151"; repStart "-1361"; chr12 rmsk exon 17538796 17538993 1251 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "4441"; repFamily "ERV1"; repLeft "4244"; repStart "-3315"; chr12 rmsk exon 17538980 17541160 17766 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "735"; repStart "-4800"; chr12 rmsk exon 17541213 17541873 17766 - . gene_id "PRIMA41_12p12.3"; transcript_id "PRIMA41_12p12.3"; locus "PRIMA41_12p12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0096"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "3"; repStart "-7022"; ### HERVH_12p12.3d ### chr12 rmsk gene 17720252 17725012 . - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0923"; model_cov "4307"; model_pct "55.8"; chr12 rmsk exon 17720252 17720648 2725 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 17720649 17721029 2405 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 17721028 17721255 1327 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr12 rmsk exon 17721246 17721891 4219 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "4495"; repStart "-2572"; chr12 rmsk exon 17721886 17722395 3287 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chr12 rmsk exon 17722386 17722532 827 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 17722527 17725012 15365 - . gene_id "HERVH_12p12.3d"; transcript_id "HERVH_12p12.3d"; locus "HERVH_12p12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0923"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "606"; repStart "-4726"; ### ERVLE_12p12.3e ### chr12 rmsk gene 17740649 17742825 . + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2668"; model_cov "1058"; model_pct "18.7"; chr12 rmsk exon 17740649 17740828 418 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "615"; repFamily "ERVL"; repLeft "-5052"; repStart "428"; chr12 rmsk exon 17740829 17740945 272 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "844"; repFamily "ERVL"; repLeft "-4823"; repStart "730"; chr12 rmsk exon 17741033 17741230 460 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "1184"; repFamily "ERVL"; repLeft "-4483"; repStart "973"; chr12 rmsk exon 17741260 17741271 460 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "1185"; repFamily "ERVL"; repLeft "-4482"; repStart "1185"; chr12 rmsk exon 17741455 17741590 460 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "1306"; repFamily "ERVL"; repLeft "-4361"; repStart "1185"; chr12 rmsk exon 17742363 17742442 749 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "2035"; repFamily "ERVL"; repLeft "-3632"; repStart "1954"; chr12 rmsk exon 17742505 17742825 749 + . gene_id "ERVLE_12p12.3e"; transcript_id "ERVLE_12p12.3e"; locus "ERVLE_12p12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2668"; repClass "LTR"; repEnd "2380"; repFamily "ERVL"; repLeft "-3287"; repStart "2036"; ### ERVLB4_12p12.3c ### chr12 rmsk gene 17896543 17898261 . + . gene_id "ERVLB4_12p12.3c"; transcript_id "ERVLB4_12p12.3c"; locus "ERVLB4_12p12.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1258"; model_cov "1468"; model_pct "25.7"; chr12 rmsk exon 17896543 17897006 566 + . gene_id "ERVLB4_12p12.3c"; transcript_id "ERVLB4_12p12.3c"; locus "ERVLB4_12p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1258"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2779"; repStart "2457"; chr12 rmsk exon 17897066 17897502 765 + . gene_id "ERVLB4_12p12.3c"; transcript_id "ERVLB4_12p12.3c"; locus "ERVLB4_12p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1258"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "-2773"; repStart "2484"; chr12 rmsk exon 17897816 17898261 732 + . gene_id "ERVLB4_12p12.3c"; transcript_id "ERVLB4_12p12.3c"; locus "ERVLB4_12p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1258"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "-399"; repStart "4782"; ### ERVLE_12p12.3f ### chr12 rmsk gene 17974961 17976508 . - . gene_id "ERVLE_12p12.3f"; transcript_id "ERVLE_12p12.3f"; locus "ERVLE_12p12.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2669"; model_cov "1344"; model_pct "23.7"; chr12 rmsk exon 17974961 17975043 269 - . gene_id "ERVLE_12p12.3f"; transcript_id "ERVLE_12p12.3f"; locus "ERVLE_12p12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2669"; repClass "LTR"; repEnd "3268"; repFamily "ERVL"; repLeft "3188"; repStart "-2399"; chr12 rmsk exon 17975172 17976134 1499 - . gene_id "ERVLE_12p12.3f"; transcript_id "ERVLE_12p12.3f"; locus "ERVLE_12p12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2669"; repClass "LTR"; repEnd "2932"; repFamily "ERVL"; repLeft "1937"; repStart "-2735"; chr12 rmsk exon 17976226 17976508 263 - . gene_id "ERVLE_12p12.3f"; transcript_id "ERVLE_12p12.3f"; locus "ERVLE_12p12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2669"; repClass "LTR"; repEnd "2067"; repFamily "ERVL"; repLeft "1798"; repStart "-3600"; ### HERV9_12p12.3 ### chr12 rmsk gene 18033479 18041442 . + . gene_id "HERV9_12p12.3"; transcript_id "HERV9_12p12.3"; locus "HERV9_12p12.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0138"; model_cov "6682"; model_pct "79.2"; chr12 rmsk exon 18033479 18040071 38378 + . gene_id "HERV9_12p12.3"; transcript_id "HERV9_12p12.3"; locus "HERV9_12p12.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0138"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1754"; chr12 rmsk exon 18040072 18041442 9881 + . gene_id "HERV9_12p12.3"; transcript_id "HERV9_12p12.3"; locus "HERV9_12p12.3"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0138"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HML1_12p12.3a ### chr12 rmsk gene 18066676 18067971 . + . gene_id "HML1_12p12.3a"; transcript_id "HML1_12p12.3a"; locus "HML1_12p12.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0083"; model_cov "746"; model_pct "12.2"; chr12 rmsk exon 18066676 18067069 1995 + . gene_id "HML1_12p12.3a"; transcript_id "HML1_12p12.3a"; locus "HML1_12p12.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0083"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "7"; chr12 rmsk exon 18067070 18067134 500 + . gene_id "HML1_12p12.3a"; transcript_id "HML1_12p12.3a"; locus "HML1_12p12.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0083"; repClass "LTR"; repEnd "64"; repFamily "ERVK"; repLeft "-6032"; repStart "1"; chr12 rmsk exon 18067320 18067971 4482 + . gene_id "HML1_12p12.3a"; transcript_id "HML1_12p12.3a"; locus "HML1_12p12.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0083"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "-5312"; repStart "101"; ### HERVW_12p12.3 ### chr12 rmsk gene 18068008 18070640 . + . gene_id "HERVW_12p12.3"; transcript_id "HERVW_12p12.3"; locus "HERVW_12p12.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0225"; model_cov "2730"; model_pct "31.6"; chr12 rmsk exon 18068008 18069169 8438 + . gene_id "HERVW_12p12.3"; transcript_id "HERVW_12p12.3"; locus "HERVW_12p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0225"; repClass "LTR"; repEnd "2013"; repFamily "ERV1"; repLeft "-6613"; repStart "824"; chr12 rmsk exon 18069156 18070592 10064 + . gene_id "HERVW_12p12.3"; transcript_id "HERVW_12p12.3"; locus "HERVW_12p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0225"; repClass "LTR"; repEnd "7175"; repFamily "ERV1"; repLeft "-1451"; repStart "5682"; chr12 rmsk exon 18070592 18070640 307 + . gene_id "HERVW_12p12.3"; transcript_id "HERVW_12p12.3"; locus "HERVW_12p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0225"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "433"; ### HML1_12p12.3b ### chr12 rmsk gene 18070641 18071863 . + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0084"; model_cov "875"; model_pct "14.4"; chr12 rmsk exon 18070641 18071108 1911 + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0084"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "-490"; repStart "5036"; chr12 rmsk exon 18071103 18071282 1488 + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0084"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5715"; chr12 rmsk exon 18071358 18071455 457 + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0084"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5973"; chr12 rmsk exon 18071459 18071505 253 + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0084"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-562"; repStart "1"; chr12 rmsk exon 18071494 18071863 1846 + . gene_id "HML1_12p12.3b"; transcript_id "HML1_12p12.3b"; locus "HML1_12p12.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0084"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; ### ERV316A3_12p12.3d ### chr12 rmsk gene 18079145 18079559 . + . gene_id "ERV316A3_12p12.3d"; transcript_id "ERV316A3_12p12.3d"; locus "ERV316A3_12p12.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2051"; model_cov "569"; model_pct "10.9"; chr12 rmsk exon 18079145 18079559 776 + . gene_id "ERV316A3_12p12.3d"; transcript_id "ERV316A3_12p12.3d"; locus "ERV316A3_12p12.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2051"; repClass "LTR"; repEnd "3768"; repFamily "ERVL"; repLeft "-1458"; repStart "3199"; ### ERVLE_12p12.3g ### chr12 rmsk gene 18120777 18121776 . + . gene_id "ERVLE_12p12.3g"; transcript_id "ERVLE_12p12.3g"; locus "ERVLE_12p12.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2670"; model_cov "781"; model_pct "13.8"; chr12 rmsk exon 18120777 18121171 711 + . gene_id "ERVLE_12p12.3g"; transcript_id "ERVLE_12p12.3g"; locus "ERVLE_12p12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2670"; repClass "LTR"; repEnd "4466"; repFamily "ERVL"; repLeft "-1201"; repStart "4067"; chr12 rmsk exon 18121395 18121776 845 + . gene_id "ERVLE_12p12.3g"; transcript_id "ERVLE_12p12.3g"; locus "ERVLE_12p12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2670"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "-496"; repStart "4789"; ### PRIMA4_12p12.3 ### chr12 rmsk gene 18159638 18161604 . + . gene_id "PRIMA4_12p12.3"; transcript_id "PRIMA4_12p12.3"; locus "PRIMA4_12p12.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0161"; model_cov "1720"; model_pct "20.8"; chr12 rmsk exon 18159638 18159703 272 + . gene_id "PRIMA4_12p12.3"; transcript_id "PRIMA4_12p12.3"; locus "PRIMA4_12p12.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0161"; repClass "LTR"; repEnd "3761"; repFamily "ERV1"; repLeft "-4509"; repStart "3694"; chr12 rmsk exon 18159955 18161604 1194 + . gene_id "PRIMA4_12p12.3"; transcript_id "PRIMA4_12p12.3"; locus "PRIMA4_12p12.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0161"; repClass "LTR"; repEnd "4954"; repFamily "ERV1"; repLeft "-3316"; repStart "3301"; ### HERVIP10FH_12p12.3 ### chr12 rmsk gene 18172692 18178556 . + . gene_id "HERVIP10FH_12p12.3"; transcript_id "HERVIP10FH_12p12.3"; locus "HERVIP10FH_12p12.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0123"; model_cov "5099"; model_pct "99.9"; chr12 rmsk exon 18172692 18173166 2986 + . gene_id "HERVIP10FH_12p12.3"; transcript_id "HERVIP10FH_12p12.3"; locus "HERVIP10FH_12p12.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0123"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 18173169 18178070 28916 + . gene_id "HERVIP10FH_12p12.3"; transcript_id "HERVIP10FH_12p12.3"; locus "HERVIP10FH_12p12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0123"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 18178074 18178556 3377 + . gene_id "HERVIP10FH_12p12.3"; transcript_id "HERVIP10FH_12p12.3"; locus "HERVIP10FH_12p12.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0123"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_12p12.3e ### chr12 rmsk gene 18195661 18203727 . + . gene_id "HERVH_12p12.3e"; transcript_id "HERVH_12p12.3e"; locus "HERVH_12p12.3e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0924"; model_cov "6901"; model_pct "89.5"; chr12 rmsk exon 18195661 18196158 3088 + . gene_id "HERVH_12p12.3e"; transcript_id "HERVH_12p12.3e"; locus "HERVH_12p12.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0924"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr12 rmsk exon 18196161 18196568 2863 + . gene_id "HERVH_12p12.3e"; transcript_id "HERVH_12p12.3e"; locus "HERVH_12p12.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0924"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "-7303"; repStart "1"; chr12 rmsk exon 18196567 18203231 27040 + . gene_id "HERVH_12p12.3e"; transcript_id "HERVH_12p12.3e"; locus "HERVH_12p12.3e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0924"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1221"; chr12 rmsk exon 18203232 18203727 3345 + . gene_id "HERVH_12p12.3e"; transcript_id "HERVH_12p12.3e"; locus "HERVH_12p12.3e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0924"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP2_12p12.3 ### chr12 rmsk gene 18352321 18357025 . - . gene_id "HUERSP2_12p12.3"; transcript_id "HUERSP2_12p12.3"; locus "HUERSP2_12p12.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0093"; model_cov "3010"; model_pct "97.5"; chr12 rmsk exon 18352321 18353101 4033 - . gene_id "HUERSP2_12p12.3"; transcript_id "HUERSP2_12p12.3"; locus "HUERSP2_12p12.3"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0093"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 18353103 18356155 16042 - . gene_id "HUERSP2_12p12.3"; transcript_id "HUERSP2_12p12.3"; locus "HUERSP2_12p12.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0093"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "77"; repStart "-1"; chr12 rmsk exon 18356266 18357025 4357 - . gene_id "HUERSP2_12p12.3"; transcript_id "HUERSP2_12p12.3"; locus "HUERSP2_12p12.3"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0093"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12p12.3d ### chr12 rmsk gene 18632421 18638744 . - . gene_id "ERVLB4_12p12.3d"; transcript_id "ERVLB4_12p12.3d"; locus "ERVLB4_12p12.3d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1259"; model_cov "5345"; model_pct "93.5"; chr12 rmsk exon 18632421 18632981 1635 - . gene_id "ERVLB4_12p12.3d"; transcript_id "ERVLB4_12p12.3d"; locus "ERVLB4_12p12.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1259"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-34"; repStart "0"; chr12 rmsk exon 18632983 18636220 28812 - . gene_id "ERVLB4_12p12.3d"; transcript_id "ERVLB4_12p12.3d"; locus "ERVLB4_12p12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1259"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "2571"; repStart "0"; chr12 rmsk exon 18636527 18638645 28812 - . gene_id "ERVLB4_12p12.3d"; transcript_id "ERVLB4_12p12.3d"; locus "ERVLB4_12p12.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1259"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "368"; repStart "-3144"; chr12 rmsk exon 18638651 18638744 498 - . gene_id "ERVLB4_12p12.3d"; transcript_id "ERVLB4_12p12.3d"; locus "ERVLB4_12p12.3d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1259"; repClass "LTR"; repEnd "93"; repFamily "ERVL"; repLeft "1"; repStart "-463"; ### ERV316A3_12p12.3e ### chr12 rmsk gene 18812570 18814272 . + . gene_id "ERV316A3_12p12.3e"; transcript_id "ERV316A3_12p12.3e"; locus "ERV316A3_12p12.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2052"; model_cov "1170"; model_pct "22.4"; chr12 rmsk exon 18812570 18812714 513 + . gene_id "ERV316A3_12p12.3e"; transcript_id "ERV316A3_12p12.3e"; locus "ERV316A3_12p12.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2052"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "-256"; repStart "1"; chr12 rmsk exon 18812719 18813902 2585 + . gene_id "ERV316A3_12p12.3e"; transcript_id "ERV316A3_12p12.3e"; locus "ERV316A3_12p12.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2052"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4055"; chr12 rmsk exon 18813905 18814272 1236 + . gene_id "ERV316A3_12p12.3e"; transcript_id "ERV316A3_12p12.3e"; locus "ERV316A3_12p12.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2052"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "-70"; repStart "2"; ### ERVLE_12p12.3h ### chr12 rmsk gene 18882800 18885179 . + . gene_id "ERVLE_12p12.3h"; transcript_id "ERVLE_12p12.3h"; locus "ERVLE_12p12.3h"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2671"; model_cov "1666"; model_pct "29.4"; chr12 rmsk exon 18882800 18883362 1201 + . gene_id "ERVLE_12p12.3h"; transcript_id "ERVLE_12p12.3h"; locus "ERVLE_12p12.3h"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2671"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "-8"; repStart "34"; chr12 rmsk exon 18883489 18883901 1202 + . gene_id "ERVLE_12p12.3h"; transcript_id "ERVLE_12p12.3h"; locus "ERVLE_12p12.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2671"; repClass "LTR"; repEnd "497"; repFamily "ERVL"; repLeft "-5170"; repStart "83"; chr12 rmsk exon 18883990 18885179 4065 + . gene_id "ERVLE_12p12.3h"; transcript_id "ERVLE_12p12.3h"; locus "ERVLE_12p12.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2671"; repClass "LTR"; repEnd "1934"; repFamily "ERVL"; repLeft "-3733"; repStart "682"; ### ERVLE_12p12.3i ### chr12 rmsk gene 18927910 18930898 . + . gene_id "ERVLE_12p12.3i"; transcript_id "ERVLE_12p12.3i"; locus "ERVLE_12p12.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2672"; model_cov "2624"; model_pct "46.3"; chr12 rmsk exon 18927910 18928159 397 + . gene_id "ERVLE_12p12.3i"; transcript_id "ERVLE_12p12.3i"; locus "ERVLE_12p12.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2672"; repClass "LTR"; repEnd "1221"; repFamily "ERVL"; repLeft "-4446"; repStart "966"; chr12 rmsk exon 18928282 18928825 961 + . gene_id "ERVLE_12p12.3i"; transcript_id "ERVLE_12p12.3i"; locus "ERVLE_12p12.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2672"; repClass "LTR"; repEnd "1962"; repFamily "ERVL"; repLeft "-3705"; repStart "1430"; chr12 rmsk exon 18928837 18929921 2581 + . gene_id "ERVLE_12p12.3i"; transcript_id "ERVLE_12p12.3i"; locus "ERVLE_12p12.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2672"; repClass "LTR"; repEnd "2823"; repFamily "ERVL"; repLeft "-2844"; repStart "1627"; chr12 rmsk exon 18930276 18930898 2581 + . gene_id "ERVLE_12p12.3i"; transcript_id "ERVLE_12p12.3i"; locus "ERVLE_12p12.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2672"; repClass "LTR"; repEnd "3465"; repFamily "ERVL"; repLeft "-2202"; repStart "2824"; ### ERV316A3_12p12.3f ### chr12 rmsk gene 19695669 19700207 . - . gene_id "ERV316A3_12p12.3f"; transcript_id "ERV316A3_12p12.3f"; locus "ERV316A3_12p12.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2053"; model_cov "3421"; model_pct "65.5"; chr12 rmsk exon 19695669 19696051 881 - . gene_id "ERV316A3_12p12.3f"; transcript_id "ERV316A3_12p12.3f"; locus "ERV316A3_12p12.3f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2053"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "5"; repStart "-6"; chr12 rmsk exon 19696130 19696626 3134 - . gene_id "ERV316A3_12p12.3f"; transcript_id "ERV316A3_12p12.3f"; locus "ERV316A3_12p12.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2053"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4649"; repStart "-50"; chr12 rmsk exon 19696923 19697902 3134 - . gene_id "ERV316A3_12p12.3f"; transcript_id "ERV316A3_12p12.3f"; locus "ERV316A3_12p12.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2053"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "3640"; repStart "-578"; chr12 rmsk exon 19698348 19700207 2763 - . gene_id "ERV316A3_12p12.3f"; transcript_id "ERV316A3_12p12.3f"; locus "ERV316A3_12p12.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2053"; repClass "LTR"; repEnd "2252"; repFamily "ERVL"; repLeft "366"; repStart "-2974"; ### HUERSP2_12p12.2 ### chr12 rmsk gene 20209542 20210062 . + . gene_id "HUERSP2_12p12.2"; transcript_id "HUERSP2_12p12.2"; locus "HUERSP2_12p12.2"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0094"; model_cov "566"; model_pct "18.3"; chr12 rmsk exon 20209542 20210062 3133 + . gene_id "HUERSP2_12p12.2"; transcript_id "HUERSP2_12p12.2"; locus "HUERSP2_12p12.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0094"; repClass "LTR"; repEnd "1601"; repFamily "ERV1"; repLeft "-1487"; repStart "1035"; ### ERV316A3_12p12.2a ### chr12 rmsk gene 20218583 20219503 . - . gene_id "ERV316A3_12p12.2a"; transcript_id "ERV316A3_12p12.2a"; locus "ERV316A3_12p12.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2057"; model_cov "774"; model_pct "14.8"; chr12 rmsk exon 20218583 20218869 394 - . gene_id "ERV316A3_12p12.2a"; transcript_id "ERV316A3_12p12.2a"; locus "ERV316A3_12p12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2057"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "1808"; repStart "-3037"; chr12 rmsk exon 20219102 20219503 977 - . gene_id "ERV316A3_12p12.2a"; transcript_id "ERV316A3_12p12.2a"; locus "ERV316A3_12p12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2057"; repClass "LTR"; repEnd "1655"; repFamily "ERVL"; repLeft "1262"; repStart "-3571"; ### ERV316A3_12p12.2b ### chr12 rmsk gene 20225131 20226250 . - . gene_id "ERV316A3_12p12.2b"; transcript_id "ERV316A3_12p12.2b"; locus "ERV316A3_12p12.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2058"; model_cov "1006"; model_pct "19.2"; chr12 rmsk exon 20225131 20226116 1804 - . gene_id "ERV316A3_12p12.2b"; transcript_id "ERV316A3_12p12.2b"; locus "ERV316A3_12p12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2058"; repClass "LTR"; repEnd "1239"; repFamily "ERVL"; repLeft "233"; repStart "-3987"; chr12 rmsk exon 20226119 20226250 286 - . gene_id "ERV316A3_12p12.2b"; transcript_id "ERV316A3_12p12.2b"; locus "ERV316A3_12p12.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2058"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "324"; repStart "0"; ### ERVLE_12p12.2 ### chr12 rmsk gene 20328556 20329976 . + . gene_id "ERVLE_12p12.2"; transcript_id "ERVLE_12p12.2"; locus "ERVLE_12p12.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2674"; model_cov "644"; model_pct "11.4"; chr12 rmsk exon 20328556 20328832 810 + . gene_id "ERVLE_12p12.2"; transcript_id "ERVLE_12p12.2"; locus "ERVLE_12p12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2674"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "-2475"; repStart "2903"; chr12 rmsk exon 20329042 20329210 414 + . gene_id "ERVLE_12p12.2"; transcript_id "ERVLE_12p12.2"; locus "ERVLE_12p12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2674"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "-2279"; repStart "3226"; chr12 rmsk exon 20329847 20329976 335 + . gene_id "ERVLE_12p12.2"; transcript_id "ERVLE_12p12.2"; locus "ERVLE_12p12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2674"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "-2042"; repStart "3432"; ### HERVH_12p12.2a ### chr12 rmsk gene 20762909 20769058 . + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0925"; model_cov "4917"; model_pct "63.7"; chr12 rmsk exon 20762909 20763358 3369 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 20763361 20766785 15428 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 20766765 20766911 890 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 20766902 20767404 3322 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr12 rmsk exon 20767407 20768025 2925 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 20768023 20768230 1121 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr12 rmsk exon 20768231 20768608 2489 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 20768609 20769058 3359 + . gene_id "HERVH_12p12.2a"; transcript_id "HERVH_12p12.2a"; locus "HERVH_12p12.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0925"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_12p12.2b ### chr12 rmsk gene 20817908 20822617 . - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0926"; model_cov "4470"; model_pct "58.0"; chr12 rmsk exon 20817908 20818085 1127 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "5776"; repFamily "ERV1"; repLeft "5600"; repStart "-1937"; chr12 rmsk exon 20818087 20818704 2629 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 20818707 20819209 3269 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 20819202 20819347 807 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr12 rmsk exon 20819344 20822184 14673 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr12 rmsk exon 20822187 20822617 2553 - . gene_id "HERVH_12p12.2b"; transcript_id "HERVH_12p12.2b"; locus "HERVH_12p12.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0926"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_12p12.2a ### chr12 rmsk gene 20822626 20830681 . - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0569"; model_cov "6142"; model_pct "93.1"; chr12 rmsk exon 20822626 20822894 1725 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0569"; repClass "LTR"; repEnd "275"; repFamily "ERV1"; repLeft "1"; repStart "-190"; chr12 rmsk exon 20822901 20825513 14419 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "4035"; repStart "-3"; chr12 rmsk exon 20825828 20826956 14419 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "4034"; repFamily "ERV1"; repLeft "2846"; repStart "-2564"; chr12 rmsk exon 20826958 20827569 4096 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "1944"; repStart "-4113"; chr12 rmsk exon 20827862 20828633 4096 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "1943"; repFamily "ERV1"; repLeft "1199"; repStart "-4655"; chr12 rmsk exon 20828678 20829584 2010 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "121"; repStart "-5487"; chr12 rmsk exon 20830137 20830236 2010 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0569"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "1"; repStart "-6478"; chr12 rmsk exon 20830248 20830681 2326 - . gene_id "MER4_12p12.2a"; transcript_id "MER4_12p12.2a"; locus "MER4_12p12.2a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0569"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_12p12.2 ### chr12 rmsk gene 20937493 20944851 . - . gene_id "HARLEQUIN_12p12.2"; transcript_id "HARLEQUIN_12p12.2"; locus "HARLEQUIN_12p12.2"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0140"; model_cov "6894"; model_pct "100.0"; chr12 rmsk exon 20937493 20942123 37116 - . gene_id "HARLEQUIN_12p12.2"; transcript_id "HARLEQUIN_12p12.2"; locus "HARLEQUIN_12p12.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0140"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "2258"; repStart "0"; chr12 rmsk exon 20942179 20944396 37116 - . gene_id "HARLEQUIN_12p12.2"; transcript_id "HARLEQUIN_12p12.2"; locus "HARLEQUIN_12p12.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0140"; repClass "LTR"; repEnd "2257"; repFamily "ERV1"; repLeft "1"; repStart "-4639"; chr12 rmsk exon 20944397 20944851 3478 - . gene_id "HARLEQUIN_12p12.2"; transcript_id "HARLEQUIN_12p12.2"; locus "HARLEQUIN_12p12.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0140"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3_12p12.2 ### chr12 rmsk gene 20945948 20951883 . - . gene_id "HUERSP3_12p12.2"; transcript_id "HUERSP3_12p12.2"; locus "HUERSP3_12p12.2"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0149"; model_cov "5056"; model_pct "56.7"; chr12 rmsk exon 20945948 20946569 2843 - . gene_id "HUERSP3_12p12.2"; transcript_id "HUERSP3_12p12.2"; locus "HUERSP3_12p12.2"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0149"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 20946571 20946834 1162 - . gene_id "HUERSP3_12p12.2"; transcript_id "HUERSP3_12p12.2"; locus "HUERSP3_12p12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0149"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "8701"; repStart "-4"; chr12 rmsk exon 20947054 20949654 16409 - . gene_id "HUERSP3_12p12.2"; transcript_id "HUERSP3_12p12.2"; locus "HUERSP3_12p12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0149"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "4311"; repStart "-2007"; chr12 rmsk exon 20949628 20951883 14666 - . gene_id "HUERSP3_12p12.2"; transcript_id "HUERSP3_12p12.2"; locus "HUERSP3_12p12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0149"; repClass "LTR"; repEnd "4197"; repFamily "ERV1"; repLeft "1956"; repStart "-4722"; ### MER4_12p12.2b ### chr12 rmsk gene 20963717 20967692 . - . gene_id "MER4_12p12.2b"; transcript_id "MER4_12p12.2b"; locus "MER4_12p12.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0570"; model_cov "4112"; model_pct "62.3"; chr12 rmsk exon 20963717 20964148 2607 - . gene_id "MER4_12p12.2b"; transcript_id "MER4_12p12.2b"; locus "MER4_12p12.2b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0570"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "5"; repStart "-1"; chr12 rmsk exon 20964196 20967692 14282 - . gene_id "MER4_12p12.2b"; transcript_id "MER4_12p12.2b"; locus "MER4_12p12.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0570"; repClass "LTR"; repEnd "6429"; repFamily "ERV1"; repLeft "2317"; repStart "-169"; ### LTR57_12p12.2 ### chr12 rmsk gene 20967693 20968283 . - . gene_id "LTR57_12p12.2"; transcript_id "LTR57_12p12.2"; locus "LTR57_12p12.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0127"; model_cov "591"; model_pct "11.1"; chr12 rmsk exon 20967693 20968283 1799 - . gene_id "LTR57_12p12.2"; transcript_id "LTR57_12p12.2"; locus "LTR57_12p12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0127"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "984"; repStart "-3768"; ### MER4_12p12.2c ### chr12 rmsk gene 20968284 20969097 . - . gene_id "MER4_12p12.2c"; transcript_id "MER4_12p12.2c"; locus "MER4_12p12.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0571"; model_cov "959"; model_pct "14.5"; chr12 rmsk exon 20968284 20969097 14282 - . gene_id "MER4_12p12.2c"; transcript_id "MER4_12p12.2c"; locus "MER4_12p12.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0571"; repClass "LTR"; repEnd "6429"; repFamily "ERV1"; repLeft "5470"; repStart "-169"; ### HUERSP1_12p12.1 ### chr12 rmsk gene 21231389 21234666 . - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0146"; model_cov "2268"; model_pct "36.2"; chr12 rmsk exon 21231389 21231643 1197 - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0146"; repClass "LTR"; repEnd "2591"; repFamily "ERV1"; repLeft "2331"; repStart "-3672"; chr12 rmsk exon 21231804 21232695 8506 - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0146"; repClass "LTR"; repEnd "2102"; repFamily "ERV1"; repLeft "1223"; repStart "-4161"; chr12 rmsk exon 21232771 21233702 8506 - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0146"; repClass "LTR"; repEnd "1222"; repFamily "ERV1"; repLeft "297"; repStart "-5041"; chr12 rmsk exon 21233718 21233924 1439 - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0146"; repClass "LTR"; repEnd "210"; repFamily "ERV1"; repLeft "6"; repStart "-6053"; chr12 rmsk exon 21233930 21234666 3904 - . gene_id "HUERSP1_12p12.1"; transcript_id "HUERSP1_12p12.1"; locus "HUERSP1_12p12.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0146"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_12p12.1a ### chr12 rmsk gene 21322253 21325951 . - . gene_id "MER4B_12p12.1a"; transcript_id "MER4B_12p12.1a"; locus "MER4B_12p12.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0332"; model_cov "2796"; model_pct "41.4"; chr12 rmsk exon 21322253 21322873 4142 - . gene_id "MER4B_12p12.1a"; transcript_id "MER4B_12p12.1a"; locus "MER4B_12p12.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0332"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 21322874 21323274 18418 - . gene_id "MER4B_12p12.1a"; transcript_id "MER4B_12p12.1a"; locus "MER4B_12p12.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0332"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6338"; repStart "0"; chr12 rmsk exon 21323600 21325951 18418 - . gene_id "MER4B_12p12.1a"; transcript_id "MER4B_12p12.1a"; locus "MER4B_12p12.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0332"; repClass "LTR"; repEnd "6337"; repFamily "ERV1"; repLeft "3961"; repStart "-421"; ### MER4B_12p12.1b ### chr12 rmsk gene 21328851 21332655 . - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0333"; model_cov "2881"; model_pct "42.6"; chr12 rmsk exon 21328851 21330210 11463 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "3961"; repFamily "ERV1"; repLeft "2554"; repStart "-2797"; chr12 rmsk exon 21330534 21331142 11463 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "2553"; repFamily "ERV1"; repLeft "1939"; repStart "-4205"; chr12 rmsk exon 21331143 21331330 608 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "1635"; repFamily "ERV1"; repLeft "1422"; repStart "-5123"; chr12 rmsk exon 21331377 21331476 314 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "994"; repFamily "ERV1"; repLeft "909"; repStart "-5764"; chr12 rmsk exon 21331531 21332037 2537 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "723"; repFamily "ERV1"; repLeft "161"; repStart "-6035"; chr12 rmsk exon 21332041 21332655 3460 - . gene_id "MER4B_12p12.1b"; transcript_id "MER4B_12p12.1b"; locus "MER4B_12p12.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0333"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLE_12p12.1a ### chr12 rmsk gene 21492564 21499139 . + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2676"; model_cov "5518"; model_pct "97.4"; chr12 rmsk exon 21492564 21493110 1348 + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2676"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "57"; chr12 rmsk exon 21493124 21493928 11814 + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2676"; repClass "LTR"; repEnd "905"; repFamily "ERVL"; repLeft "-4762"; repStart "24"; chr12 rmsk exon 21494348 21495314 11814 + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2676"; repClass "LTR"; repEnd "1863"; repFamily "ERVL"; repLeft "-3804"; repStart "906"; chr12 rmsk exon 21495620 21498912 11814 + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2676"; repClass "LTR"; repEnd "5311"; repFamily "ERVL"; repLeft "-356"; repStart "1817"; chr12 rmsk exon 21498975 21499139 622 + . gene_id "ERVLE_12p12.1a"; transcript_id "ERVLE_12p12.1a"; locus "ERVLE_12p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2676"; repClass "LTR"; repEnd "5612"; repFamily "ERVL"; repLeft "-55"; repStart "5426"; ### HERVL_12p12.1a ### chr12 rmsk gene 21582173 21586504 . + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0954"; model_cov "3377"; model_pct "59.7"; chr12 rmsk exon 21582173 21582562 2944 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chr12 rmsk exon 21582640 21582680 2944 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "396"; chr12 rmsk exon 21582681 21583033 2734 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "353"; repFamily "ERVL"; repLeft "-5301"; repStart "1"; chr12 rmsk exon 21583028 21586007 22678 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2629"; chr12 rmsk exon 21586008 21586419 3328 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr12 rmsk exon 21586465 21586504 3328 + . gene_id "HERVL_12p12.1a"; transcript_id "HERVL_12p12.1a"; locus "HERVL_12p12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0954"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "413"; ### MER4_12p12.1 ### chr12 rmsk gene 22299070 22306344 . + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; category "tandem*"; intModel "MER4-int"; locid "MER4-int_0572"; model_cov "3646"; model_pct "55.3"; chr12 rmsk exon 22299070 22299950 3908 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2793"; chr12 rmsk exon 22299950 22301288 15417 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "5223"; repFamily "ERV1"; repLeft "-1375"; repStart "3837"; chr12 rmsk exon 22301335 22302657 15417 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5224"; chr12 rmsk exon 22302666 22303117 3013 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0572"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 22303121 22303846 10111 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "811"; repFamily "ERV1"; repLeft "-5787"; repStart "1"; chr12 rmsk exon 22303889 22304930 10111 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "1704"; repFamily "ERV1"; repLeft "-4894"; repStart "263"; chr12 rmsk exon 22304955 22305379 10111 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "-4303"; repStart "1705"; chr12 rmsk exon 22305681 22305889 10111 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0572"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2296"; chr12 rmsk exon 22306085 22306344 1742 + . gene_id "MER4_12p12.1"; transcript_id "MER4_12p12.1"; locus "MER4_12p12.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0572"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "189"; ### MER34B_12p12.1 ### chr12 rmsk gene 22398318 22400101 . - . gene_id "MER34B_12p12.1"; transcript_id "MER34B_12p12.1"; locus "MER34B_12p12.1"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0207"; model_cov "1516"; model_pct "28.3"; chr12 rmsk exon 22398318 22398500 702 - . gene_id "MER34B_12p12.1"; transcript_id "MER34B_12p12.1"; locus "MER34B_12p12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0207"; repClass "LTR"; repEnd "4912"; repFamily "ERV1"; repLeft "4743"; repStart "-444"; chr12 rmsk exon 22398521 22399904 3511 - . gene_id "MER34B_12p12.1"; transcript_id "MER34B_12p12.1"; locus "MER34B_12p12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0207"; repClass "LTR"; repEnd "3635"; repFamily "ERV1"; repLeft "2288"; repStart "-1721"; chr12 rmsk exon 22399905 22399969 364 - . gene_id "MER34B_12p12.1"; transcript_id "MER34B_12p12.1"; locus "MER34B_12p12.1"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0207"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "477"; repStart "0"; chr12 rmsk exon 22399970 22400101 708 - . gene_id "MER34B_12p12.1"; transcript_id "MER34B_12p12.1"; locus "MER34B_12p12.1"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0207"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "105"; repStart "-304"; ### ERVLB4_12p12.1a ### chr12 rmsk gene 22562756 22563943 . + . gene_id "ERVLB4_12p12.1a"; transcript_id "ERVLB4_12p12.1a"; locus "ERVLB4_12p12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1261"; model_cov "710"; model_pct "12.4"; chr12 rmsk exon 22562756 22563321 2369 + . gene_id "ERVLB4_12p12.1a"; transcript_id "ERVLB4_12p12.1a"; locus "ERVLB4_12p12.1a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1261"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr12 rmsk exon 22563322 22563943 2555 + . gene_id "ERVLB4_12p12.1a"; transcript_id "ERVLB4_12p12.1a"; locus "ERVLB4_12p12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1261"; repClass "LTR"; repEnd "711"; repFamily "ERVL"; repLeft "-5003"; repStart "1"; ### MER41_12p12.1a ### chr12 rmsk gene 22613580 22615521 . + . gene_id "MER41_12p12.1a"; transcript_id "MER41_12p12.1a"; locus "MER41_12p12.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0385"; model_cov "1370"; model_pct "23.0"; chr12 rmsk exon 22613580 22614128 4169 + . gene_id "MER41_12p12.1a"; transcript_id "MER41_12p12.1a"; locus "MER41_12p12.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0385"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 22614216 22615180 5526 + . gene_id "MER41_12p12.1a"; transcript_id "MER41_12p12.1a"; locus "MER41_12p12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0385"; repClass "LTR"; repEnd "1089"; repFamily "ERV1"; repLeft "-4857"; repStart "3"; chr12 rmsk exon 22615220 22615521 5159 + . gene_id "MER41_12p12.1a"; transcript_id "MER41_12p12.1a"; locus "MER41_12p12.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0385"; repClass "LTR"; repEnd "1882"; repFamily "ERV1"; repLeft "-4064"; repStart "1598"; ### PABLA_12p12.1 ### chr12 rmsk gene 22615824 22618469 . + . gene_id "PABLA_12p12.1"; transcript_id "PABLA_12p12.1"; locus "PABLA_12p12.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0111"; model_cov "2366"; model_pct "47.2"; chr12 rmsk exon 22615824 22616724 12210 + . gene_id "PABLA_12p12.1"; transcript_id "PABLA_12p12.1"; locus "PABLA_12p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0111"; repClass "LTR"; repEnd "3120"; repFamily "ERV1"; repLeft "-1895"; repStart "2190"; chr12 rmsk exon 22617032 22618469 12210 + . gene_id "PABLA_12p12.1"; transcript_id "PABLA_12p12.1"; locus "PABLA_12p12.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0111"; repClass "LTR"; repEnd "4557"; repFamily "ERV1"; repLeft "-458"; repStart "3121"; ### ERV316A3_12p12.1a ### chr12 rmsk gene 22702957 22705593 . + . gene_id "ERV316A3_12p12.1a"; transcript_id "ERV316A3_12p12.1a"; locus "ERV316A3_12p12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2059"; model_cov "2384"; model_pct "45.6"; chr12 rmsk exon 22702957 22703183 497 + . gene_id "ERV316A3_12p12.1a"; transcript_id "ERV316A3_12p12.1a"; locus "ERV316A3_12p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2059"; repClass "LTR"; repEnd "627"; repFamily "ERVL"; repLeft "-4599"; repStart "385"; chr12 rmsk exon 22703182 22703717 1697 + . gene_id "ERV316A3_12p12.1a"; transcript_id "ERV316A3_12p12.1a"; locus "ERV316A3_12p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2059"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "-3729"; repStart "955"; chr12 rmsk exon 22703944 22705510 4453 + . gene_id "ERV316A3_12p12.1a"; transcript_id "ERV316A3_12p12.1a"; locus "ERV316A3_12p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2059"; repClass "LTR"; repEnd "4069"; repFamily "ERVL"; repLeft "-1157"; repStart "2469"; chr12 rmsk exon 22705511 22705593 316 + . gene_id "ERV316A3_12p12.1a"; transcript_id "ERV316A3_12p12.1a"; locus "ERV316A3_12p12.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2059"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "340"; ### ERVLB4_12p12.1b ### chr12 rmsk gene 22819186 22822707 . + . gene_id "ERVLB4_12p12.1b"; transcript_id "ERVLB4_12p12.1b"; locus "ERVLB4_12p12.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1262"; model_cov "2113"; model_pct "37.0"; chr12 rmsk exon 22819186 22820228 5106 + . gene_id "ERVLB4_12p12.1b"; transcript_id "ERVLB4_12p12.1b"; locus "ERVLB4_12p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1262"; repClass "LTR"; repEnd "4460"; repFamily "ERVL"; repLeft "-1254"; repStart "3338"; chr12 rmsk exon 22821745 22822707 4467 + . gene_id "ERVLB4_12p12.1b"; transcript_id "ERVLB4_12p12.1b"; locus "ERVLB4_12p12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1262"; repClass "LTR"; repEnd "5443"; repFamily "ERVL"; repLeft "-271"; repStart "4452"; ### ERVLE_12p12.1b ### chr12 rmsk gene 23154745 23155785 . + . gene_id "ERVLE_12p12.1b"; transcript_id "ERVLE_12p12.1b"; locus "ERVLE_12p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2680"; model_cov "895"; model_pct "15.8"; chr12 rmsk exon 23154745 23155077 533 + . gene_id "ERVLE_12p12.1b"; transcript_id "ERVLE_12p12.1b"; locus "ERVLE_12p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2680"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-4050"; repStart "1287"; chr12 rmsk exon 23155144 23155414 635 + . gene_id "ERVLE_12p12.1b"; transcript_id "ERVLE_12p12.1b"; locus "ERVLE_12p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2680"; repClass "LTR"; repEnd "2160"; repFamily "ERVL"; repLeft "-3507"; repStart "1885"; chr12 rmsk exon 23155500 23155785 704 + . gene_id "ERVLE_12p12.1b"; transcript_id "ERVLE_12p12.1b"; locus "ERVLE_12p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2680"; repClass "LTR"; repEnd "2475"; repFamily "ERVL"; repLeft "-3192"; repStart "2185"; ### HERVL40_12p12.1a ### chr12 rmsk gene 23300499 23303665 . + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0317"; model_cov "1643"; model_pct "29.7"; chr12 rmsk exon 23300499 23300680 1556 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-269"; repStart "3"; chr12 rmsk exon 23300977 23301236 1556 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "194"; chr12 rmsk exon 23301240 23301314 288 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "76"; repFamily "ERVL"; repLeft "-5454"; repStart "1"; chr12 rmsk exon 23301539 23301605 264 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "1109"; repFamily "ERVL"; repLeft "-4421"; repStart "1036"; chr12 rmsk exon 23302182 23302434 520 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "-3887"; repStart "1386"; chr12 rmsk exon 23302402 23302749 949 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "2395"; repFamily "ERVL"; repLeft "-3135"; repStart "2050"; chr12 rmsk exon 23302749 23303228 2037 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "3043"; repFamily "ERVL"; repLeft "-2487"; repStart "2561"; chr12 rmsk exon 23303252 23303366 543 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "3864"; repFamily "ERVL"; repLeft "-1666"; repStart "3751"; chr12 rmsk exon 23303363 23303665 987 + . gene_id "HERVL40_12p12.1a"; transcript_id "HERVL40_12p12.1a"; locus "HERVL40_12p12.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0317"; repClass "LTR"; repEnd "4288"; repFamily "ERVL"; repLeft "-1242"; repStart "3990"; ### ERVLB4_12p12.1c ### chr12 rmsk gene 23303681 23304365 . + . gene_id "ERVLB4_12p12.1c"; transcript_id "ERVLB4_12p12.1c"; locus "ERVLB4_12p12.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1264"; model_cov "675"; model_pct "11.8"; chr12 rmsk exon 23303681 23304365 660 + . gene_id "ERVLB4_12p12.1c"; transcript_id "ERVLB4_12p12.1c"; locus "ERVLB4_12p12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1264"; repClass "LTR"; repEnd "5401"; repFamily "ERVL"; repLeft "-313"; repStart "4726"; ### ERVLE_12p12.1c ### chr12 rmsk gene 23430153 23431578 . + . gene_id "ERVLE_12p12.1c"; transcript_id "ERVLE_12p12.1c"; locus "ERVLE_12p12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2682"; model_cov "1228"; model_pct "21.7"; chr12 rmsk exon 23430153 23430266 364 + . gene_id "ERVLE_12p12.1c"; transcript_id "ERVLE_12p12.1c"; locus "ERVLE_12p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2682"; repClass "LTR"; repEnd "890"; repFamily "ERVL"; repLeft "-4777"; repStart "765"; chr12 rmsk exon 23430339 23430558 2002 + . gene_id "ERVLE_12p12.1c"; transcript_id "ERVLE_12p12.1c"; locus "ERVLE_12p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2682"; repClass "LTR"; repEnd "1152"; repFamily "ERVL"; repLeft "-4515"; repStart "928"; chr12 rmsk exon 23430777 23431578 2002 + . gene_id "ERVLE_12p12.1c"; transcript_id "ERVLE_12p12.1c"; locus "ERVLE_12p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2682"; repClass "LTR"; repEnd "2032"; repFamily "ERVL"; repLeft "-3635"; repStart "1153"; ### HERVH_12p12.1a ### chr12 rmsk gene 23505831 23511572 . - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0927"; model_cov "5116"; model_pct "66.3"; chr12 rmsk exon 23505831 23506286 3309 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 23506287 23506668 2504 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 23506669 23506902 1307 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 23506904 23507515 3028 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 23507518 23508357 5537 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr12 rmsk exon 23508337 23511121 15217 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 23511124 23511572 3180 - . gene_id "HERVH_12p12.1a"; transcript_id "HERVH_12p12.1a"; locus "HERVH_12p12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0927"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_12p12.1b ### chr12 rmsk gene 24570440 24572732 . + . gene_id "HERVL40_12p12.1b"; transcript_id "HERVL40_12p12.1b"; locus "HERVL40_12p12.1b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0318"; model_cov "1365"; model_pct "24.7"; chr12 rmsk exon 24570440 24570678 1018 + . gene_id "HERVL40_12p12.1b"; transcript_id "HERVL40_12p12.1b"; locus "HERVL40_12p12.1b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0318"; repClass "LTR"; repEnd "254"; repFamily "ERVL"; repLeft "-211"; repStart "5"; chr12 rmsk exon 24570687 24571361 3743 + . gene_id "HERVL40_12p12.1b"; transcript_id "HERVL40_12p12.1b"; locus "HERVL40_12p12.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0318"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-684"; repStart "4162"; chr12 rmsk exon 24571686 24572359 3743 + . gene_id "HERVL40_12p12.1b"; transcript_id "HERVL40_12p12.1b"; locus "HERVL40_12p12.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0318"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "-2"; repStart "4847"; chr12 rmsk exon 24572364 24572732 1014 + . gene_id "HERVL40_12p12.1b"; transcript_id "HERVL40_12p12.1b"; locus "HERVL40_12p12.1b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0318"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-12"; repStart "3"; ### HERVL40_12p12.1c ### chr12 rmsk gene 24733093 24734968 . + . gene_id "HERVL40_12p12.1c"; transcript_id "HERVL40_12p12.1c"; locus "HERVL40_12p12.1c"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0319"; model_cov "1044"; model_pct "18.9"; chr12 rmsk exon 24733093 24733605 2168 + . gene_id "HERVL40_12p12.1c"; transcript_id "HERVL40_12p12.1c"; locus "HERVL40_12p12.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0319"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 24733614 24734169 1440 + . gene_id "HERVL40_12p12.1c"; transcript_id "HERVL40_12p12.1c"; locus "HERVL40_12p12.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0319"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "-4987"; repStart "8"; chr12 rmsk exon 24734243 24734645 533 + . gene_id "HERVL40_12p12.1c"; transcript_id "HERVL40_12p12.1c"; locus "HERVL40_12p12.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0319"; repClass "LTR"; repEnd "1088"; repFamily "ERVL"; repLeft "-4442"; repStart "579"; chr12 rmsk exon 24734654 24734968 1149 + . gene_id "HERVL40_12p12.1c"; transcript_id "HERVL40_12p12.1c"; locus "HERVL40_12p12.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0319"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "182"; ### MER41_12p12.1b ### chr12 rmsk gene 24856758 24862303 . + . gene_id "MER41_12p12.1b"; transcript_id "MER41_12p12.1b"; locus "MER41_12p12.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0386"; model_cov "4683"; model_pct "78.8"; chr12 rmsk exon 24856758 24859339 27278 + . gene_id "MER41_12p12.1b"; transcript_id "MER41_12p12.1b"; locus "MER41_12p12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0386"; repClass "LTR"; repEnd "3909"; repFamily "ERV1"; repLeft "-2037"; repStart "1262"; chr12 rmsk exon 24859640 24861679 27278 + . gene_id "MER41_12p12.1b"; transcript_id "MER41_12p12.1b"; locus "MER41_12p12.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0386"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "3910"; chr12 rmsk exon 24861680 24862303 3830 + . gene_id "MER41_12p12.1b"; transcript_id "MER41_12p12.1b"; locus "MER41_12p12.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0386"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_12p12.1b ### chr12 rmsk gene 25163213 25169515 . + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0928"; model_cov "5630"; model_pct "73.0"; chr12 rmsk exon 25163213 25163626 2351 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "-21"; chr12 rmsk exon 25163629 25166563 14420 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "3"; chr12 rmsk exon 25166543 25166690 883 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 25166681 25167178 3255 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr12 rmsk exon 25167181 25167370 1272 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-3033"; repStart "4488"; chr12 rmsk exon 25167357 25167968 4413 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "-1333"; repStart "5769"; chr12 rmsk exon 25167942 25169105 8176 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6529"; chr12 rmsk exon 25169106 25169515 2840 + . gene_id "HERVH_12p12.1b"; transcript_id "HERVH_12p12.1b"; locus "HERVH_12p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0928"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_12p12.1b ### chr12 rmsk gene 25307152 25313857 . + . gene_id "HERVL_12p12.1b"; transcript_id "HERVL_12p12.1b"; locus "HERVL_12p12.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0956"; model_cov "5653"; model_pct "100.0"; chr12 rmsk exon 25307152 25307696 1981 + . gene_id "HERVL_12p12.1b"; transcript_id "HERVL_12p12.1b"; locus "HERVL_12p12.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0956"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr12 rmsk exon 25307697 25313307 41345 + . gene_id "HERVL_12p12.1b"; transcript_id "HERVL_12p12.1b"; locus "HERVL_12p12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0956"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 25313308 25313857 2143 + . gene_id "HERVL_12p12.1b"; transcript_id "HERVL_12p12.1b"; locus "HERVL_12p12.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0956"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERV316A3_12p12.1b ### chr12 rmsk gene 25437598 25442371 . - . gene_id "ERV316A3_12p12.1b"; transcript_id "ERV316A3_12p12.1b"; locus "ERV316A3_12p12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2061"; model_cov "3099"; model_pct "59.3"; chr12 rmsk exon 25437598 25439433 4546 - . gene_id "ERV316A3_12p12.1b"; transcript_id "ERV316A3_12p12.1b"; locus "ERV316A3_12p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2061"; repClass "LTR"; repEnd "4099"; repFamily "ERVL"; repLeft "2290"; repStart "-1127"; chr12 rmsk exon 25440298 25440429 553 - . gene_id "ERV316A3_12p12.1b"; transcript_id "ERV316A3_12p12.1b"; locus "ERV316A3_12p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2061"; repClass "LTR"; repEnd "3029"; repFamily "ERVL"; repLeft "2896"; repStart "-2197"; chr12 rmsk exon 25441160 25442371 2546 - . gene_id "ERV316A3_12p12.1b"; transcript_id "ERV316A3_12p12.1b"; locus "ERV316A3_12p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2061"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "1343"; repStart "-2726"; ### HERVL_12p12.1c ### chr12 rmsk gene 25477837 25480140 . - . gene_id "HERVL_12p12.1c"; transcript_id "HERVL_12p12.1c"; locus "HERVL_12p12.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0958"; model_cov "1630"; model_pct "28.8"; chr12 rmsk exon 25477837 25478213 2748 - . gene_id "HERVL_12p12.1c"; transcript_id "HERVL_12p12.1c"; locus "HERVL_12p12.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0958"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "1"; repStart "-64"; chr12 rmsk exon 25478214 25478512 2056 - . gene_id "HERVL_12p12.1c"; transcript_id "HERVL_12p12.1c"; locus "HERVL_12p12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0958"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5363"; repStart "0"; chr12 rmsk exon 25478799 25480140 10177 - . gene_id "HERVL_12p12.1c"; transcript_id "HERVL_12p12.1c"; locus "HERVL_12p12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0958"; repClass "LTR"; repEnd "5304"; repFamily "ERVL"; repLeft "3965"; repStart "-350"; ### ERV316A3_12p12.1c ### chr12 rmsk gene 26292768 26295393 . + . gene_id "ERV316A3_12p12.1c"; transcript_id "ERV316A3_12p12.1c"; locus "ERV316A3_12p12.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2062"; model_cov "1943"; model_pct "37.2"; chr12 rmsk exon 26292768 26292942 593 + . gene_id "ERV316A3_12p12.1c"; transcript_id "ERV316A3_12p12.1c"; locus "ERV316A3_12p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2062"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "-3060"; repStart "1984"; chr12 rmsk exon 26292948 26294345 4489 + . gene_id "ERV316A3_12p12.1c"; transcript_id "ERV316A3_12p12.1c"; locus "ERV316A3_12p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2062"; repClass "LTR"; repEnd "4287"; repFamily "ERVL"; repLeft "-939"; repStart "2840"; chr12 rmsk exon 26294831 26295008 500 + . gene_id "ERV316A3_12p12.1c"; transcript_id "ERV316A3_12p12.1c"; locus "ERV316A3_12p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2062"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-758"; repStart "4289"; chr12 rmsk exon 26295238 26295393 630 + . gene_id "ERV316A3_12p12.1c"; transcript_id "ERV316A3_12p12.1c"; locus "ERV316A3_12p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2062"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "-623"; repStart "4468"; ### MER41_12p11.23a ### chr12 rmsk gene 26752242 26757215 . + . gene_id "MER41_12p11.23a"; transcript_id "MER41_12p11.23a"; locus "MER41_12p11.23a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0387"; model_cov "5146"; model_pct "86.5"; chr12 rmsk exon 26752242 26752789 4238 + . gene_id "MER41_12p11.23a"; transcript_id "MER41_12p11.23a"; locus "MER41_12p11.23a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0387"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 26752876 26753592 4179 + . gene_id "MER41_12p11.23a"; transcript_id "MER41_12p11.23a"; locus "MER41_12p11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0387"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "-5323"; repStart "1"; chr12 rmsk exon 26753579 26756789 12763 + . gene_id "MER41_12p11.23a"; transcript_id "MER41_12p11.23a"; locus "MER41_12p11.23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0387"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1420"; chr12 rmsk exon 26756790 26757215 3953 + . gene_id "MER41_12p11.23a"; transcript_id "MER41_12p11.23a"; locus "MER41_12p11.23a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0387"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-113"; repStart "1"; ### HERVL_12p11.23 ### chr12 rmsk gene 26775547 26782199 . + . gene_id "HERVL_12p11.23"; transcript_id "HERVL_12p11.23"; locus "HERVL_12p11.23"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0959"; model_cov "5653"; model_pct "100.0"; chr12 rmsk exon 26775547 26775999 3047 + . gene_id "HERVL_12p11.23"; transcript_id "HERVL_12p11.23"; locus "HERVL_12p11.23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0959"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 26776000 26781630 37279 + . gene_id "HERVL_12p11.23"; transcript_id "HERVL_12p11.23"; locus "HERVL_12p11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0959"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 26781631 26781991 2335 + . gene_id "HERVL_12p11.23"; transcript_id "HERVL_12p11.23"; locus "HERVL_12p11.23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0959"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-56"; repStart "1"; chr12 rmsk exon 26782117 26782199 234 + . gene_id "HERVL_12p11.23"; transcript_id "HERVL_12p11.23"; locus "HERVL_12p11.23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0959"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-4"; repStart "386"; ### ERVLE_12p11.23 ### chr12 rmsk gene 27030605 27031659 . - . gene_id "ERVLE_12p11.23"; transcript_id "ERVLE_12p11.23"; locus "ERVLE_12p11.23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2684"; model_cov "769"; model_pct "13.6"; chr12 rmsk exon 27030605 27030916 1591 - . gene_id "ERVLE_12p11.23"; transcript_id "ERVLE_12p11.23"; locus "ERVLE_12p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2684"; repClass "LTR"; repEnd "1700"; repFamily "ERVL"; repLeft "1386"; repStart "-3967"; chr12 rmsk exon 27031207 27031509 1591 - . gene_id "ERVLE_12p11.23"; transcript_id "ERVLE_12p11.23"; locus "ERVLE_12p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2684"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "1064"; repStart "-4282"; chr12 rmsk exon 27031534 27031659 503 - . gene_id "ERVLE_12p11.23"; transcript_id "ERVLE_12p11.23"; locus "ERVLE_12p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2684"; repClass "LTR"; repEnd "139"; repFamily "ERVL"; repLeft "5"; repStart "-5528"; ### ERV316A3_12p11.23a ### chr12 rmsk gene 27043819 27044742 . - . gene_id "ERV316A3_12p11.23a"; transcript_id "ERV316A3_12p11.23a"; locus "ERV316A3_12p11.23a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2063"; model_cov "741"; model_pct "14.2"; chr12 rmsk exon 27043819 27044393 1326 - . gene_id "ERV316A3_12p11.23a"; transcript_id "ERV316A3_12p11.23a"; locus "ERV316A3_12p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2063"; repClass "LTR"; repEnd "1775"; repFamily "ERVL"; repLeft "1143"; repStart "-3451"; chr12 rmsk exon 27044634 27044742 327 - . gene_id "ERV316A3_12p11.23a"; transcript_id "ERV316A3_12p11.23a"; locus "ERV316A3_12p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2063"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "960"; repStart "-4157"; ### ERV316A3_12p11.23b ### chr12 rmsk gene 27044886 27046043 . - . gene_id "ERV316A3_12p11.23b"; transcript_id "ERV316A3_12p11.23b"; locus "ERV316A3_12p11.23b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2064"; model_cov "757"; model_pct "14.5"; chr12 rmsk exon 27044886 27045138 869 - . gene_id "ERV316A3_12p11.23b"; transcript_id "ERV316A3_12p11.23b"; locus "ERV316A3_12p11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2064"; repClass "LTR"; repEnd "1250"; repFamily "ERVL"; repLeft "979"; repStart "-3976"; chr12 rmsk exon 27045549 27046043 869 - . gene_id "ERV316A3_12p11.23b"; transcript_id "ERV316A3_12p11.23b"; locus "ERV316A3_12p11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2064"; repClass "LTR"; repEnd "978"; repFamily "ERVL"; repLeft "492"; repStart "-4248"; ### ERV316A3_12p11.23c ### chr12 rmsk gene 27163101 27164330 . - . gene_id "ERV316A3_12p11.23c"; transcript_id "ERV316A3_12p11.23c"; locus "ERV316A3_12p11.23c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2065"; model_cov "1292"; model_pct "24.7"; chr12 rmsk exon 27163101 27163566 875 - . gene_id "ERV316A3_12p11.23c"; transcript_id "ERV316A3_12p11.23c"; locus "ERV316A3_12p11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2065"; repClass "LTR"; repEnd "3264"; repFamily "ERVL"; repLeft "2793"; repStart "-1962"; chr12 rmsk exon 27163561 27164330 1884 - . gene_id "ERV316A3_12p11.23c"; transcript_id "ERV316A3_12p11.23c"; locus "ERV316A3_12p11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2065"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "2029"; repStart "-2376"; ### MER41_12p11.23b ### chr12 rmsk gene 27230552 27232175 . - . gene_id "MER41_12p11.23b"; transcript_id "MER41_12p11.23b"; locus "MER41_12p11.23b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0388"; model_cov "880"; model_pct "14.8"; chr12 rmsk exon 27230552 27230995 3309 - . gene_id "MER41_12p11.23b"; transcript_id "MER41_12p11.23b"; locus "MER41_12p11.23b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0388"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "1"; repStart "-96"; chr12 rmsk exon 27231315 27232175 6420 - . gene_id "MER41_12p11.23b"; transcript_id "MER41_12p11.23b"; locus "MER41_12p11.23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0388"; repClass "LTR"; repEnd "5940"; repFamily "ERV1"; repLeft "5060"; repStart "-6"; ### ERVLE_12p11.22a ### chr12 rmsk gene 28079349 28080367 . - . gene_id "ERVLE_12p11.22a"; transcript_id "ERVLE_12p11.22a"; locus "ERVLE_12p11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2685"; model_cov "1024"; model_pct "18.1"; chr12 rmsk exon 28079349 28080367 4059 - . gene_id "ERVLE_12p11.22a"; transcript_id "ERVLE_12p11.22a"; locus "ERVLE_12p11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2685"; repClass "LTR"; repEnd "2780"; repFamily "ERVL"; repLeft "1756"; repStart "-2887"; ### ERV316A3_12p11.22a ### chr12 rmsk gene 28176270 28178703 . + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2066"; model_cov "1677"; model_pct "32.1"; chr12 rmsk exon 28176270 28176663 845 + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2066"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr12 rmsk exon 28176666 28177113 1246 + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2066"; repClass "LTR"; repEnd "735"; repFamily "ERVL"; repLeft "-4491"; repStart "232"; chr12 rmsk exon 28177105 28177819 1948 + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2066"; repClass "LTR"; repEnd "1788"; repFamily "ERVL"; repLeft "-3438"; repStart "1059"; chr12 rmsk exon 28178176 28178322 1948 + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2066"; repClass "LTR"; repEnd "1939"; repFamily "ERVL"; repLeft "-3287"; repStart "1789"; chr12 rmsk exon 28178402 28178703 1283 + . gene_id "ERV316A3_12p11.22a"; transcript_id "ERV316A3_12p11.22a"; locus "ERV316A3_12p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2066"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "-2768"; repStart "2163"; ### ERVLB4_12p11.22a ### chr12 rmsk gene 28212976 28215406 . + . gene_id "ERVLB4_12p11.22a"; transcript_id "ERVLB4_12p11.22a"; locus "ERVLB4_12p11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1266"; model_cov "2000"; model_pct "35.0"; chr12 rmsk exon 28212976 28213564 3449 + . gene_id "ERVLB4_12p11.22a"; transcript_id "ERVLB4_12p11.22a"; locus "ERVLB4_12p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1266"; repClass "LTR"; repEnd "1148"; repFamily "ERVL"; repLeft "-4566"; repStart "537"; chr12 rmsk exon 28213562 28214888 7548 + . gene_id "ERVLB4_12p11.22a"; transcript_id "ERVLB4_12p11.22a"; locus "ERVLB4_12p11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1266"; repClass "LTR"; repEnd "5702"; repFamily "ERVL"; repLeft "-12"; repStart "4313"; chr12 rmsk exon 28214890 28215406 1885 + . gene_id "ERVLB4_12p11.22a"; transcript_id "ERVLB4_12p11.22a"; locus "ERVLB4_12p11.22a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1266"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-3"; repStart "1"; ### ERVL_12p11.22 ### chr12 rmsk gene 28493920 28495611 . - . gene_id "ERVL_12p11.22"; transcript_id "ERVL_12p11.22"; locus "ERVL_12p11.22"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0321"; model_cov "1585"; model_pct "27.5"; chr12 rmsk exon 28493920 28494918 1793 - . gene_id "ERVL_12p11.22"; transcript_id "ERVL_12p11.22"; locus "ERVL_12p11.22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0321"; repClass "LTR"; repEnd "3496"; repFamily "ERVL"; repLeft "2420"; repStart "-2261"; chr12 rmsk exon 28495134 28495611 679 - . gene_id "ERVL_12p11.22"; transcript_id "ERVL_12p11.22"; locus "ERVL_12p11.22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0321"; repClass "LTR"; repEnd "1901"; repFamily "ERVL"; repLeft "1392"; repStart "-3856"; ### ERV316A3_12p11.22b ### chr12 rmsk gene 28507767 28509038 . - . gene_id "ERV316A3_12p11.22b"; transcript_id "ERV316A3_12p11.22b"; locus "ERV316A3_12p11.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2067"; model_cov "872"; model_pct "16.7"; chr12 rmsk exon 28507767 28508143 1188 - . gene_id "ERV316A3_12p11.22b"; transcript_id "ERV316A3_12p11.22b"; locus "ERV316A3_12p11.22b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2067"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "12"; repStart "-13"; chr12 rmsk exon 28508157 28509038 2031 - . gene_id "ERV316A3_12p11.22b"; transcript_id "ERV316A3_12p11.22b"; locus "ERV316A3_12p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2067"; repClass "LTR"; repEnd "5211"; repFamily "ERVL"; repLeft "4339"; repStart "-15"; ### ERVLE_12p11.22b ### chr12 rmsk gene 28680075 28681004 . - . gene_id "ERVLE_12p11.22b"; transcript_id "ERVLE_12p11.22b"; locus "ERVLE_12p11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2686"; model_cov "604"; model_pct "10.7"; chr12 rmsk exon 28680075 28680261 274 - . gene_id "ERVLE_12p11.22b"; transcript_id "ERVLE_12p11.22b"; locus "ERVLE_12p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2686"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "900"; repStart "-4571"; chr12 rmsk exon 28680589 28681004 504 - . gene_id "ERVLE_12p11.22b"; transcript_id "ERVLE_12p11.22b"; locus "ERVLE_12p11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2686"; repClass "LTR"; repEnd "565"; repFamily "ERVL"; repLeft "157"; repStart "-5102"; ### HERV4_12p11.22 ### chr12 rmsk gene 28808391 28811016 . - . gene_id "HERV4_12p11.22"; transcript_id "HERV4_12p11.22"; locus "HERV4_12p11.22"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0097"; model_cov "995"; model_pct "15.2"; chr12 rmsk exon 28808391 28808587 1059 - . gene_id "HERV4_12p11.22"; transcript_id "HERV4_12p11.22"; locus "HERV4_12p11.22"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0097"; repClass "LTR"; repEnd "657"; repFamily "ERV1"; repLeft "464"; repStart "0"; chr12 rmsk exon 28808927 28809075 665 - . gene_id "HERV4_12p11.22"; transcript_id "HERV4_12p11.22"; locus "HERV4_12p11.22"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0097"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "6389"; repStart "-2"; chr12 rmsk exon 28810199 28810468 1326 - . gene_id "HERV4_12p11.22"; transcript_id "HERV4_12p11.22"; locus "HERV4_12p11.22"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0097"; repClass "LTR"; repEnd "2859"; repFamily "ERV1"; repLeft "2586"; repStart "-3680"; chr12 rmsk exon 28810469 28811016 1311 - . gene_id "HERV4_12p11.22"; transcript_id "HERV4_12p11.22"; locus "HERV4_12p11.22"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0097"; repClass "LTR"; repEnd "1344"; repFamily "ERV1"; repLeft "770"; repStart "-5195"; ### HERVL18_12p11.22 ### chr12 rmsk gene 28813823 28819402 . + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0115"; model_cov "4418"; model_pct "73.1"; chr12 rmsk exon 28813823 28814356 2393 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 28814390 28814657 1550 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "273"; repFamily "ERVL"; repLeft "-5774"; repStart "4"; chr12 rmsk exon 28814695 28816148 8430 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "939"; chr12 rmsk exon 28816148 28816429 1103 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "3076"; repFamily "ERVL"; repLeft "-2971"; repStart "2720"; chr12 rmsk exon 28816444 28817071 3702 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2952"; chr12 rmsk exon 28817074 28818693 9720 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4394"; chr12 rmsk exon 28818848 28819402 2574 + . gene_id "HERVL18_12p11.22"; transcript_id "HERVL18_12p11.22"; locus "HERVL18_12p11.22"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0115"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_12p11.22b ### chr12 rmsk gene 29035514 29037502 . - . gene_id "ERVLB4_12p11.22b"; transcript_id "ERVLB4_12p11.22b"; locus "ERVLB4_12p11.22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1267"; model_cov "1877"; model_pct "32.8"; chr12 rmsk exon 29035514 29036620 1092 - . gene_id "ERVLB4_12p11.22b"; transcript_id "ERVLB4_12p11.22b"; locus "ERVLB4_12p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1267"; repClass "LTR"; repEnd "5620"; repFamily "ERVL"; repLeft "4504"; repStart "-94"; chr12 rmsk exon 29036657 29036926 558 - . gene_id "ERVLB4_12p11.22b"; transcript_id "ERVLB4_12p11.22b"; locus "ERVLB4_12p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1267"; repClass "LTR"; repEnd "4142"; repFamily "ERVL"; repLeft "3851"; repStart "-1572"; chr12 rmsk exon 29037057 29037502 701 - . gene_id "ERVLB4_12p11.22b"; transcript_id "ERVLB4_12p11.22b"; locus "ERVLB4_12p11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1267"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "3360"; repStart "-1884"; ### LTR25_12p11.22a ### chr12 rmsk gene 29133833 29134615 . - . gene_id "LTR25_12p11.22a"; transcript_id "LTR25_12p11.22a"; locus "LTR25_12p11.22a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0095"; model_cov "783"; model_pct "10.9"; chr12 rmsk exon 29133833 29134615 4046 - . gene_id "LTR25_12p11.22a"; transcript_id "LTR25_12p11.22a"; locus "LTR25_12p11.22a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0095"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6404"; repStart "-1"; ### HERVH_12p11.22a ### chr12 rmsk gene 29134620 29140801 . - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0929"; model_cov "4934"; model_pct "64.0"; chr12 rmsk exon 29134620 29135056 3087 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "439"; repFamily "ERV1"; repLeft "1"; repStart "-11"; chr12 rmsk exon 29135057 29135480 2417 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7277"; repStart "0"; chr12 rmsk exon 29135498 29135635 4156 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "5021"; repStart "-2564"; chr12 rmsk exon 29135931 29136466 4156 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4489"; repStart "-2693"; chr12 rmsk exon 29136470 29137320 5656 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr12 rmsk exon 29137315 29140351 17227 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr12 rmsk exon 29140360 29140801 3017 - . gene_id "HERVH_12p11.22a"; transcript_id "HERVH_12p11.22a"; locus "HERVH_12p11.22a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0929"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### LTR25_12p11.22b ### chr12 rmsk gene 29140802 29145444 . - . gene_id "LTR25_12p11.22b"; transcript_id "LTR25_12p11.22b"; locus "LTR25_12p11.22b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0096"; model_cov "6393"; model_pct "88.9"; chr12 rmsk exon 29140802 29140976 13838 - . gene_id "LTR25_12p11.22b"; transcript_id "LTR25_12p11.22b"; locus "LTR25_12p11.22b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0096"; repClass "LTR"; repEnd "6409"; repFamily "ERV1"; repLeft "6247"; repStart "-779"; chr12 rmsk exon 29141278 29145140 13838 - . gene_id "LTR25_12p11.22b"; transcript_id "LTR25_12p11.22b"; locus "LTR25_12p11.22b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0096"; repClass "LTR"; repEnd "6246"; repFamily "ERV1"; repLeft "609"; repStart "-942"; chr12 rmsk exon 29145136 29145444 649 - . gene_id "LTR25_12p11.22b"; transcript_id "LTR25_12p11.22b"; locus "LTR25_12p11.22b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0096"; repClass "LTR"; repEnd "981"; repFamily "ERV1"; repLeft "387"; repStart "-6207"; ### ERVLB4_12p11.22c ### chr12 rmsk gene 29250813 29253520 . + . gene_id "ERVLB4_12p11.22c"; transcript_id "ERVLB4_12p11.22c"; locus "ERVLB4_12p11.22c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1268"; model_cov "2044"; model_pct "35.8"; chr12 rmsk exon 29250813 29251782 5587 + . gene_id "ERVLB4_12p11.22c"; transcript_id "ERVLB4_12p11.22c"; locus "ERVLB4_12p11.22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1268"; repClass "LTR"; repEnd "2316"; repFamily "ERVL"; repLeft "-3398"; repStart "1332"; chr12 rmsk exon 29251785 29252809 5926 + . gene_id "ERVLB4_12p11.22c"; transcript_id "ERVLB4_12p11.22c"; locus "ERVLB4_12p11.22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1268"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4654"; chr12 rmsk exon 29252810 29253172 1727 + . gene_id "ERVLB4_12p11.22c"; transcript_id "ERVLB4_12p11.22c"; locus "ERVLB4_12p11.22c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1268"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr12 rmsk exon 29253467 29253520 252 + . gene_id "ERVLB4_12p11.22c"; transcript_id "ERVLB4_12p11.22c"; locus "ERVLB4_12p11.22c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1268"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "359"; ### ERVLE_12p11.22c ### chr12 rmsk gene 29773476 29774169 . - . gene_id "ERVLE_12p11.22c"; transcript_id "ERVLE_12p11.22c"; locus "ERVLE_12p11.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2687"; model_cov "681"; model_pct "12.0"; chr12 rmsk exon 29773476 29774169 1901 - . gene_id "ERVLE_12p11.22c"; transcript_id "ERVLE_12p11.22c"; locus "ERVLE_12p11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2687"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "1086"; repStart "-3900"; ### ERVLE_12p11.22d ### chr12 rmsk gene 29825831 29826524 . + . gene_id "ERVLE_12p11.22d"; transcript_id "ERVLE_12p11.22d"; locus "ERVLE_12p11.22d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2688"; model_cov "696"; model_pct "12.3"; chr12 rmsk exon 29825831 29826524 1414 + . gene_id "ERVLE_12p11.22d"; transcript_id "ERVLE_12p11.22d"; locus "ERVLE_12p11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2688"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-365"; repStart "4606"; ### HERVL_12p11.22 ### chr12 rmsk gene 29933443 29936169 . - . gene_id "HERVL_12p11.22"; transcript_id "HERVL_12p11.22"; locus "HERVL_12p11.22"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0960"; model_cov "2293"; model_pct "40.6"; chr12 rmsk exon 29933443 29933885 3018 - . gene_id "HERVL_12p11.22"; transcript_id "HERVL_12p11.22"; locus "HERVL_12p11.22"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0960"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr12 rmsk exon 29933886 29936169 17398 - . gene_id "HERVL_12p11.22"; transcript_id "HERVL_12p11.22"; locus "HERVL_12p11.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0960"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3361"; repStart "0"; ### HERVH_12p11.22b ### chr12 rmsk gene 30056081 30062516 . + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0931"; model_cov "5611"; model_pct "72.7"; chr12 rmsk exon 30056081 30056491 2783 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 30056494 30059397 14180 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 30059377 30061448 8105 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3140"; chr12 rmsk exon 30061450 30061666 1291 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 30061667 30062055 2180 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 30062056 30062516 2992 + . gene_id "HERVH_12p11.22b"; transcript_id "HERVH_12p11.22b"; locus "HERVH_12p11.22b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0931"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_12p11.22c ### chr12 rmsk gene 30146767 30152218 . + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2068"; model_cov "3621"; model_pct "69.3"; chr12 rmsk exon 30146767 30146866 342 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "-337"; repStart "1"; chr12 rmsk exon 30147024 30147123 342 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "201"; repFamily "ERVL"; repLeft "-250"; repStart "115"; chr12 rmsk exon 30147137 30147218 238 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "364"; chr12 rmsk exon 30147221 30147946 1477 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "954"; repFamily "ERVL"; repLeft "-4272"; repStart "233"; chr12 rmsk exon 30147957 30149171 2318 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "2050"; repFamily "ERVL"; repLeft "-3176"; repStart "832"; chr12 rmsk exon 30149213 30149537 3178 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "3853"; repFamily "ERVL"; repLeft "-1373"; repStart "3494"; chr12 rmsk exon 30149834 30150341 3178 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "4339"; repFamily "ERVL"; repLeft "-887"; repStart "3854"; chr12 rmsk exon 30150644 30151462 3178 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "5178"; repFamily "ERVL"; repLeft "-48"; repStart "4340"; chr12 rmsk exon 30151820 30152218 1283 + . gene_id "ERV316A3_12p11.22c"; transcript_id "ERV316A3_12p11.22c"; locus "ERV316A3_12p11.22c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2068"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-20"; repStart "22"; ### ERV316A3_12p11.22d ### chr12 rmsk gene 30172362 30177161 . + . gene_id "ERV316A3_12p11.22d"; transcript_id "ERV316A3_12p11.22d"; locus "ERV316A3_12p11.22d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2069"; model_cov "2061"; model_pct "39.4"; chr12 rmsk exon 30172362 30173059 2033 + . gene_id "ERV316A3_12p11.22d"; transcript_id "ERV316A3_12p11.22d"; locus "ERV316A3_12p11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2069"; repClass "LTR"; repEnd "3296"; repFamily "ERVL"; repLeft "-1930"; repStart "2609"; chr12 rmsk exon 30175308 30175399 256 + . gene_id "ERV316A3_12p11.22d"; transcript_id "ERV316A3_12p11.22d"; locus "ERV316A3_12p11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2069"; repClass "LTR"; repEnd "3409"; repFamily "ERVL"; repLeft "-1817"; repStart "3318"; chr12 rmsk exon 30175459 30176707 3926 + . gene_id "ERV316A3_12p11.22d"; transcript_id "ERV316A3_12p11.22d"; locus "ERV316A3_12p11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2069"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3943"; chr12 rmsk exon 30176710 30177161 1049 + . gene_id "ERV316A3_12p11.22d"; transcript_id "ERV316A3_12p11.22d"; locus "ERV316A3_12p11.22d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2069"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERVLB4_12p11.22d ### chr12 rmsk gene 30325863 30330604 . - . gene_id "ERVLB4_12p11.22d"; transcript_id "ERVLB4_12p11.22d"; locus "ERVLB4_12p11.22d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1269"; model_cov "3649"; model_pct "63.9"; chr12 rmsk exon 30325863 30327741 9850 - . gene_id "ERVLB4_12p11.22d"; transcript_id "ERVLB4_12p11.22d"; locus "ERVLB4_12p11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1269"; repClass "LTR"; repEnd "5324"; repFamily "ERVL"; repLeft "3346"; repStart "-390"; chr12 rmsk exon 30328934 30330604 9850 - . gene_id "ERVLB4_12p11.22d"; transcript_id "ERVLB4_12p11.22d"; locus "ERVLB4_12p11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1269"; repClass "LTR"; repEnd "3345"; repFamily "ERVL"; repLeft "1674"; repStart "-2369"; ### ERVLE_12p11.22e ### chr12 rmsk gene 30358703 30360235 . + . gene_id "ERVLE_12p11.22e"; transcript_id "ERVLE_12p11.22e"; locus "ERVLE_12p11.22e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2689"; model_cov "1656"; model_pct "29.2"; chr12 rmsk exon 30358703 30360235 2296 + . gene_id "ERVLE_12p11.22e"; transcript_id "ERVLE_12p11.22e"; locus "ERVLE_12p11.22e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2689"; repClass "LTR"; repEnd "1613"; repFamily "ERVL"; repLeft "-4054"; repStart "-43"; ### HUERSP1_12p11.22 ### chr12 rmsk gene 30368589 30375022 . - . gene_id "HUERSP1_12p11.22"; transcript_id "HUERSP1_12p11.22"; locus "HUERSP1_12p11.22"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0147"; model_cov "5751"; model_pct "91.8"; chr12 rmsk exon 30368589 30369170 4721 - . gene_id "HUERSP1_12p11.22"; transcript_id "HUERSP1_12p11.22"; locus "HUERSP1_12p11.22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0147"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "1"; repStart "-107"; chr12 rmsk exon 30369172 30373987 35413 - . gene_id "HUERSP1_12p11.22"; transcript_id "HUERSP1_12p11.22"; locus "HUERSP1_12p11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0147"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "1427"; repStart "-1"; chr12 rmsk exon 30373992 30374878 6335 - . gene_id "HUERSP1_12p11.22"; transcript_id "HUERSP1_12p11.22"; locus "HUERSP1_12p11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0147"; repClass "LTR"; repEnd "917"; repFamily "ERV1"; repLeft "1"; repStart "-5346"; chr12 rmsk exon 30374880 30375022 1052 - . gene_id "HUERSP1_12p11.22"; transcript_id "HUERSP1_12p11.22"; locus "HUERSP1_12p11.22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0147"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "548"; repStart "-1"; ### MER4_12p11.21 ### chr12 rmsk gene 30770777 30778528 . + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0574"; model_cov "6590"; model_pct "99.9"; chr12 rmsk exon 30770777 30771246 3358 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0574"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 30771249 30771464 5555 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "-6366"; repStart "1"; chr12 rmsk exon 30771500 30772587 15278 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "-4999"; repStart "233"; chr12 rmsk exon 30772876 30773762 15278 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "2679"; repFamily "ERV1"; repLeft "-3919"; repStart "1600"; chr12 rmsk exon 30774007 30774244 15278 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "2971"; repFamily "ERV1"; repLeft "-3627"; repStart "2680"; chr12 rmsk exon 30774533 30775828 15278 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "4379"; repFamily "ERV1"; repLeft "-2219"; repStart "2972"; chr12 rmsk exon 30776014 30778051 15278 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0574"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4380"; chr12 rmsk exon 30778060 30778528 3538 + . gene_id "MER4_12p11.21"; transcript_id "MER4_12p11.21"; locus "MER4_12p11.21"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0574"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_12p11.21 ### chr12 rmsk gene 30843694 30850964 . + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0151"; model_cov "4536"; model_pct "50.9"; chr12 rmsk exon 30843694 30844312 3205 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr12 rmsk exon 30844313 30844421 321 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "1609"; repFamily "ERV1"; repLeft "-7310"; repStart "1502"; chr12 rmsk exon 30844414 30844745 7235 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "2306"; repFamily "ERV1"; repLeft "-6613"; repStart "1912"; chr12 rmsk exon 30845057 30847265 8393 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "806"; chr12 rmsk exon 30847259 30847397 826 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "4683"; repFamily "ERV1"; repLeft "-4236"; repStart "4539"; chr12 rmsk exon 30847448 30847885 2977 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "5404"; repFamily "ERV1"; repLeft "-3515"; repStart "4970"; chr12 rmsk exon 30847870 30848112 4001 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "6492"; repFamily "ERV1"; repLeft "-2427"; repStart "6250"; chr12 rmsk exon 30848449 30848891 4001 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "6921"; repFamily "ERV1"; repLeft "-1998"; repStart "6493"; chr12 rmsk exon 30848899 30848991 457 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "6974"; repFamily "ERV1"; repLeft "-1945"; repStart "6882"; chr12 rmsk exon 30849444 30849551 1347 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "8759"; repFamily "ERV1"; repLeft "-160"; repStart "8701"; chr12 rmsk exon 30850123 30850289 1347 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8760"; chr12 rmsk exon 30850290 30850381 3118 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "92"; repFamily "ERV1"; repLeft "-552"; repStart "7"; chr12 rmsk exon 30850683 30850964 3118 + . gene_id "HUERSP3_12p11.21"; transcript_id "HUERSP3_12p11.21"; locus "HUERSP3_12p11.21"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0151"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "-262"; repStart "93"; ### HML6_12p11.21 ### chr12 rmsk gene 31026265 31027497 . + . gene_id "HML6_12p11.21"; transcript_id "HML6_12p11.21"; locus "HML6_12p11.21"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0060"; model_cov "786"; model_pct "10.9"; chr12 rmsk exon 31026265 31027048 5556 + . gene_id "HML6_12p11.21"; transcript_id "HML6_12p11.21"; locus "HML6_12p11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0060"; repClass "LTR"; repEnd "7196"; repFamily "ERVK"; repLeft "-6"; repStart "6410"; chr12 rmsk exon 31027054 31027497 2749 + . gene_id "HML6_12p11.21"; transcript_id "HML6_12p11.21"; locus "HML6_12p11.21"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0060"; repClass "LTR"; repEnd "443"; repFamily "ERVK"; repLeft "-41"; repStart "1"; ### PABLB_12p11.21 ### chr12 rmsk gene 31060430 31063674 . + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0072"; model_cov "2042"; model_pct "28.7"; chr12 rmsk exon 31060430 31060729 340 + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0072"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "-6355"; repStart "460"; chr12 rmsk exon 31061015 31061457 715 + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0072"; repClass "LTR"; repEnd "1383"; repFamily "ERV1"; repLeft "-5739"; repStart "937"; chr12 rmsk exon 31062000 31062129 347 + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0072"; repClass "LTR"; repEnd "2061"; repFamily "ERV1"; repLeft "-5061"; repStart "1928"; chr12 rmsk exon 31062172 31063058 1612 + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0072"; repClass "LTR"; repEnd "3048"; repFamily "ERV1"; repLeft "-4074"; repStart "2208"; chr12 rmsk exon 31063364 31063674 1612 + . gene_id "PABLB_12p11.21"; transcript_id "PABLB_12p11.21"; locus "PABLB_12p11.21"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0072"; repClass "LTR"; repEnd "3365"; repFamily "ERV1"; repLeft "-3757"; repStart "3049"; ### PRIMA4_12p11.21a ### chr12 rmsk gene 31303236 31307315 . - . gene_id "PRIMA4_12p11.21a"; transcript_id "PRIMA4_12p11.21a"; locus "PRIMA4_12p11.21a"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0162"; model_cov "2125"; model_pct "25.7"; chr12 rmsk exon 31303236 31303353 330 - . gene_id "PRIMA4_12p11.21a"; transcript_id "PRIMA4_12p11.21a"; locus "PRIMA4_12p11.21a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0162"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "8134"; repStart "0"; chr12 rmsk exon 31304978 31305696 7631 - . gene_id "PRIMA4_12p11.21a"; transcript_id "PRIMA4_12p11.21a"; locus "PRIMA4_12p11.21a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0162"; repClass "LTR"; repEnd "6386"; repFamily "ERV1"; repLeft "5720"; repStart "-1884"; chr12 rmsk exon 31305999 31307097 7631 - . gene_id "PRIMA4_12p11.21a"; transcript_id "PRIMA4_12p11.21a"; locus "PRIMA4_12p11.21a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0162"; repClass "LTR"; repEnd "5719"; repFamily "ERV1"; repLeft "4560"; repStart "-2551"; chr12 rmsk exon 31307154 31307315 859 - . gene_id "PRIMA4_12p11.21a"; transcript_id "PRIMA4_12p11.21a"; locus "PRIMA4_12p11.21a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0162"; repClass "LTR"; repEnd "3719"; repFamily "ERV1"; repLeft "3555"; repStart "-4551"; ### PRIMA4_12p11.21b ### chr12 rmsk gene 31307571 31315051 . - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0163"; model_cov "3621"; model_pct "43.8"; chr12 rmsk exon 31307571 31307970 10056 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "4550"; repFamily "ERV1"; repLeft "4149"; repStart "-3720"; chr12 rmsk exon 31308240 31308845 10056 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "4148"; repFamily "ERV1"; repLeft "3543"; repStart "-4122"; chr12 rmsk exon 31309154 31309664 10056 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "3542"; repFamily "ERV1"; repLeft "3020"; repStart "-4728"; chr12 rmsk exon 31309967 31310870 10056 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "3019"; repFamily "ERV1"; repLeft "2050"; repStart "-5251"; chr12 rmsk exon 31311133 31311502 10056 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "2049"; repFamily "ERV1"; repLeft "1705"; repStart "-6221"; chr12 rmsk exon 31314002 31314243 2164 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "1696"; repFamily "ERV1"; repLeft "1433"; repStart "-6574"; chr12 rmsk exon 31314540 31315051 2164 - . gene_id "PRIMA4_12p11.21b"; transcript_id "PRIMA4_12p11.21b"; locus "PRIMA4_12p11.21b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0163"; repClass "LTR"; repEnd "1432"; repFamily "ERV1"; repLeft "915"; repStart "-6838"; ### PRIMA41_12p11.21 ### chr12 rmsk gene 31637873 31642050 . + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0097"; model_cov "1599"; model_pct "20.6"; chr12 rmsk exon 31637873 31637999 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "6234"; repFamily "ERV1"; repLeft "-1522"; repStart "6124"; chr12 rmsk exon 31638306 31638365 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "6282"; repFamily "ERV1"; repLeft "-1474"; repStart "6235"; chr12 rmsk exon 31638686 31638892 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "6497"; repFamily "ERV1"; repLeft "-1259"; repStart "6283"; chr12 rmsk exon 31639187 31639326 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "6614"; repFamily "ERV1"; repLeft "-1142"; repStart "6498"; chr12 rmsk exon 31639586 31640097 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "7117"; repFamily "ERV1"; repLeft "-639"; repStart "6615"; chr12 rmsk exon 31640385 31640412 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "7131"; repFamily "ERV1"; repLeft "-625"; repStart "7118"; chr12 rmsk exon 31640707 31641288 3055 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "7729"; repFamily "ERV1"; repLeft "-27"; repStart "7132"; chr12 rmsk exon 31641499 31642050 3198 + . gene_id "PRIMA41_12p11.21"; transcript_id "PRIMA41_12p11.21"; locus "PRIMA41_12p11.21"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0097"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL40_12p11.21 ### chr12 rmsk gene 31721046 31722796 . + . gene_id "HERVL40_12p11.21"; transcript_id "HERVL40_12p11.21"; locus "HERVL40_12p11.21"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0320"; model_cov "1216"; model_pct "22.0"; chr12 rmsk exon 31721046 31721121 310 + . gene_id "HERVL40_12p11.21"; transcript_id "HERVL40_12p11.21"; locus "HERVL40_12p11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0320"; repClass "LTR"; repEnd "1147"; repFamily "ERVL"; repLeft "-4383"; repStart "1067"; chr12 rmsk exon 31721653 31722130 3364 + . gene_id "HERVL40_12p11.21"; transcript_id "HERVL40_12p11.21"; locus "HERVL40_12p11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0320"; repClass "LTR"; repEnd "3672"; repFamily "ERVL"; repLeft "-1858"; repStart "3181"; chr12 rmsk exon 31722177 31722796 3782 + . gene_id "HERVL40_12p11.21"; transcript_id "HERVL40_12p11.21"; locus "HERVL40_12p11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0320"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "-1212"; repStart "3673"; ### MER41_12p11.21 ### chr12 rmsk gene 31847621 31852561 . + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0390"; model_cov "4524"; model_pct "76.1"; chr12 rmsk exon 31847621 31847853 1825 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0390"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "313"; chr12 rmsk exon 31847939 31848698 5111 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0390"; repClass "LTR"; repEnd "802"; repFamily "ERV1"; repLeft "-5144"; repStart "1"; chr12 rmsk exon 31848699 31848742 7985 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0390"; repClass "LTR"; repEnd "3263"; repFamily "ERV1"; repLeft "-2683"; repStart "3222"; chr12 rmsk exon 31849053 31851541 8906 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0390"; repClass "LTR"; repEnd "5539"; repFamily "ERV1"; repLeft "-407"; repStart "2016"; chr12 rmsk exon 31851849 31852013 8906 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0390"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5785"; chr12 rmsk exon 31852014 31852561 3955 + . gene_id "MER41_12p11.21"; transcript_id "MER41_12p11.21"; locus "MER41_12p11.21"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0390"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_12p11.21a ### chr12 rmsk gene 31888520 31889291 . + . gene_id "ERVLE_12p11.21a"; transcript_id "ERVLE_12p11.21a"; locus "ERVLE_12p11.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2691"; model_cov "775"; model_pct "13.7"; chr12 rmsk exon 31888520 31889291 901 + . gene_id "ERVLE_12p11.21a"; transcript_id "ERVLE_12p11.21a"; locus "ERVLE_12p11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2691"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-3439"; repStart "1453"; ### HERVFH19_12p11.21 ### chr12 rmsk gene 31906332 31909833 . + . gene_id "HERVFH19_12p11.21"; transcript_id "HERVFH19_12p11.21"; locus "HERVFH19_12p11.21"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0033"; model_cov "2229"; model_pct "28.9"; chr12 rmsk exon 31906332 31906533 1510 + . gene_id "HERVFH19_12p11.21"; transcript_id "HERVFH19_12p11.21"; locus "HERVFH19_12p11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0033"; repClass "LTR"; repEnd "5693"; repFamily "ERV1"; repLeft "-2026"; repStart "5492"; chr12 rmsk exon 31907082 31908298 15577 + . gene_id "HERVFH19_12p11.21"; transcript_id "HERVFH19_12p11.21"; locus "HERVFH19_12p11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0033"; repClass "LTR"; repEnd "6914"; repFamily "ERV1"; repLeft "-805"; repStart "5690"; chr12 rmsk exon 31908617 31909434 15577 + . gene_id "HERVFH19_12p11.21"; transcript_id "HERVFH19_12p11.21"; locus "HERVFH19_12p11.21"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0033"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6915"; chr12 rmsk exon 31909435 31909833 1458 + . gene_id "HERVFH19_12p11.21"; transcript_id "HERVFH19_12p11.21"; locus "HERVFH19_12p11.21"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0033"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_12p11.21 ### chr12 rmsk gene 31936771 31945711 . - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0099"; model_cov "5927"; model_pct "90.6"; chr12 rmsk exon 31936771 31937534 7878 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "6194"; repFamily "ERV1"; repLeft "5427"; repStart "-345"; chr12 rmsk exon 31937983 31938102 7878 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "5426"; repFamily "ERV1"; repLeft "5313"; repStart "-1113"; chr12 rmsk exon 31938532 31939385 6703 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "5233"; repFamily "ERV1"; repLeft "4360"; repStart "-1306"; chr12 rmsk exon 31939679 31939856 23468 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "4178"; repFamily "ERV1"; repLeft "4015"; repStart "-2361"; chr12 rmsk exon 31940174 31941170 23468 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "4014"; repFamily "ERV1"; repLeft "3027"; repStart "-2525"; chr12 rmsk exon 31941788 31942541 23468 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "3026"; repFamily "ERV1"; repLeft "2214"; repStart "-3513"; chr12 rmsk exon 31942854 31945000 23468 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "2213"; repFamily "ERV1"; repLeft "1"; repStart "-4326"; chr12 rmsk exon 31945001 31945280 1441 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "169"; repStart "0"; chr12 rmsk exon 31945591 31945711 679 - . gene_id "HERV4_12p11.21"; transcript_id "HERV4_12p11.21"; locus "HERV4_12p11.21"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0099"; repClass "LTR"; repEnd "168"; repFamily "ERV1"; repLeft "1"; repStart "-466"; ### ERVLE_12p11.21b ### chr12 rmsk gene 32001005 32003619 . + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2692"; model_cov "1611"; model_pct "28.4"; chr12 rmsk exon 32001005 32001373 1059 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "2984"; repFamily "ERVL"; repLeft "-2683"; repStart "2582"; chr12 rmsk exon 32001671 32001787 1059 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "3096"; repFamily "ERVL"; repLeft "-2571"; repStart "2985"; chr12 rmsk exon 32001893 32002036 767 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "3453"; repFamily "ERVL"; repLeft "-2214"; repStart "3305"; chr12 rmsk exon 32002341 32002565 767 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "3678"; repFamily "ERVL"; repLeft "-1989"; repStart "3454"; chr12 rmsk exon 32002932 32003255 844 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "4339"; repFamily "ERVL"; repLeft "-1328"; repStart "3961"; chr12 rmsk exon 32003280 32003619 524 + . gene_id "ERVLE_12p11.21b"; transcript_id "ERVLE_12p11.21b"; locus "ERVLE_12p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2692"; repClass "LTR"; repEnd "4717"; repFamily "ERVL"; repLeft "-950"; repStart "4369"; ### HERVIP10FH_12p11.21 ### chr12 rmsk gene 32025634 32028539 . + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0124"; model_cov "1555"; model_pct "30.5"; chr12 rmsk exon 32025634 32025785 857 + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0124"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "-2"; repStart "481"; chr12 rmsk exon 32026042 32026364 1555 + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0124"; repClass "LTR"; repEnd "1298"; repFamily "ERV1"; repLeft "-3804"; repStart "946"; chr12 rmsk exon 32026363 32026619 5576 + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0124"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "-1123"; repStart "3725"; chr12 rmsk exon 32026952 32027928 5576 + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0124"; repClass "LTR"; repEnd "4929"; repFamily "ERV1"; repLeft "-173"; repStart "3980"; chr12 rmsk exon 32028015 32028539 2862 + . gene_id "HERVIP10FH_12p11.21"; transcript_id "HERVIP10FH_12p11.21"; locus "HERVIP10FH_12p11.21"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0124"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HERVH_12p11.21 ### chr12 rmsk gene 33087850 33090857 . - . gene_id "HERVH_12p11.21"; transcript_id "HERVH_12p11.21"; locus "HERVH_12p11.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0932"; model_cov "2449"; model_pct "31.8"; chr12 rmsk exon 33087850 33088282 2406 - . gene_id "HERVH_12p11.21"; transcript_id "HERVH_12p11.21"; locus "HERVH_12p11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0932"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 33088283 33089788 10336 - . gene_id "HERVH_12p11.21"; transcript_id "HERVH_12p11.21"; locus "HERVH_12p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0932"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6209"; repStart "0"; chr12 rmsk exon 33089782 33090419 2985 - . gene_id "HERVH_12p11.21"; transcript_id "HERVH_12p11.21"; locus "HERVH_12p11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0932"; repClass "LTR"; repEnd "946"; repFamily "ERV1"; repLeft "1"; repStart "-6767"; chr12 rmsk exon 33090422 33090857 2305 - . gene_id "HERVH_12p11.21"; transcript_id "HERVH_12p11.21"; locus "HERVH_12p11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0932"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_12p11.1 ### chr12 rmsk gene 33289141 33291710 . + . gene_id "ERVLE_12p11.1"; transcript_id "ERVLE_12p11.1"; locus "ERVLE_12p11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2693"; model_cov "1499"; model_pct "26.5"; chr12 rmsk exon 33289141 33289702 1223 + . gene_id "ERVLE_12p11.1"; transcript_id "ERVLE_12p11.1"; locus "ERVLE_12p11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2693"; repClass "LTR"; repEnd "2948"; repFamily "ERVL"; repLeft "-2719"; repStart "2259"; chr12 rmsk exon 33290181 33290430 1760 + . gene_id "ERVLE_12p11.1"; transcript_id "ERVLE_12p11.1"; locus "ERVLE_12p11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2693"; repClass "LTR"; repEnd "4943"; repFamily "ERVL"; repLeft "-724"; repStart "4675"; chr12 rmsk exon 33291176 33291710 1760 + . gene_id "ERVLE_12p11.1"; transcript_id "ERVLE_12p11.1"; locus "ERVLE_12p11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2693"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "-181"; repStart "4944"; ### HERVL40_12p11.1 ### chr12 rmsk gene 33572812 33575304 . - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0322"; model_cov "1319"; model_pct "23.9"; chr12 rmsk exon 33572812 33573277 1481 - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0322"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "25"; repStart "-1"; chr12 rmsk exon 33573293 33573618 878 - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0322"; repClass "LTR"; repEnd "5519"; repFamily "ERVL"; repLeft "5247"; repStart "-11"; chr12 rmsk exon 33573666 33573724 329 - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0322"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "5222"; repStart "-248"; chr12 rmsk exon 33574037 33574290 767 - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0322"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4951"; repStart "-324"; chr12 rmsk exon 33574596 33575304 2013 - . gene_id "HERVL40_12p11.1"; transcript_id "HERVL40_12p11.1"; locus "HERVL40_12p11.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0322"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "3916"; repStart "-882"; ### MER34B_12p11.1a ### chr12 rmsk gene 33654944 33658262 . - . gene_id "MER34B_12p11.1a"; transcript_id "MER34B_12p11.1a"; locus "MER34B_12p11.1a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0212"; model_cov "1912"; model_pct "35.7"; chr12 rmsk exon 33654944 33655517 1016 - . gene_id "MER34B_12p11.1a"; transcript_id "MER34B_12p11.1a"; locus "MER34B_12p11.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0212"; repClass "LTR"; repEnd "5153"; repFamily "ERV1"; repLeft "4526"; repStart "-203"; chr12 rmsk exon 33656446 33657514 2216 - . gene_id "MER34B_12p11.1a"; transcript_id "MER34B_12p11.1a"; locus "MER34B_12p11.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0212"; repClass "LTR"; repEnd "3446"; repFamily "ERV1"; repLeft "2399"; repStart "-1910"; chr12 rmsk exon 33658025 33658262 763 - . gene_id "MER34B_12p11.1a"; transcript_id "MER34B_12p11.1a"; locus "MER34B_12p11.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0212"; repClass "LTR"; repEnd "749"; repFamily "ERV1"; repLeft "511"; repStart "-4607"; ### MER34B_12p11.1b ### chr12 rmsk gene 33658358 33660421 . - . gene_id "MER34B_12p11.1b"; transcript_id "MER34B_12p11.1b"; locus "MER34B_12p11.1b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0213"; model_cov "915"; model_pct "17.1"; chr12 rmsk exon 33658358 33658509 381 - . gene_id "MER34B_12p11.1b"; transcript_id "MER34B_12p11.1b"; locus "MER34B_12p11.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0213"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1709"; repStart "-3506"; chr12 rmsk exon 33658712 33659222 1066 - . gene_id "MER34B_12p11.1b"; transcript_id "MER34B_12p11.1b"; locus "MER34B_12p11.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0213"; repClass "LTR"; repEnd "1496"; repFamily "ERV1"; repLeft "982"; repStart "-3860"; chr12 rmsk exon 33659832 33659998 458 - . gene_id "MER34B_12p11.1b"; transcript_id "MER34B_12p11.1b"; locus "MER34B_12p11.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0213"; repClass "LTR"; repEnd "-583"; repFamily "ERV1"; repLeft "-742"; repStart "-5939"; chr12 rmsk exon 33660323 33660421 367 - . gene_id "MER34B_12p11.1b"; transcript_id "MER34B_12p11.1b"; locus "MER34B_12p11.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0213"; repClass "LTR"; repEnd "-727"; repFamily "ERV1"; repLeft "-828"; repStart "-6083"; ### HERVW_12p11.1 ### chr12 rmsk gene 34100121 34102956 . + . gene_id "HERVW_12p11.1"; transcript_id "HERVW_12p11.1"; locus "HERVW_12p11.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0227"; model_cov "2554"; model_pct "29.6"; chr12 rmsk exon 34100121 34102320 17519 + . gene_id "HERVW_12p11.1"; transcript_id "HERVW_12p11.1"; locus "HERVW_12p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0227"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3794"; chr12 rmsk exon 34102314 34102352 304 + . gene_id "HERVW_12p11.1"; transcript_id "HERVW_12p11.1"; locus "HERVW_12p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0227"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr12 rmsk exon 34102343 34102634 2299 + . gene_id "HERVW_12p11.1"; transcript_id "HERVW_12p11.1"; locus "HERVW_12p11.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0227"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 34102636 34102956 2214 + . gene_id "HERVW_12p11.1"; transcript_id "HERVW_12p11.1"; locus "HERVW_12p11.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0227"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "6"; ### PRIMA41_12p11.1 ### chr12 rmsk gene 34167084 34172852 . - . gene_id "PRIMA41_12p11.1"; transcript_id "PRIMA41_12p11.1"; locus "PRIMA41_12p11.1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0098"; model_cov "4756"; model_pct "61.3"; chr12 rmsk exon 34167084 34168677 11842 - . gene_id "PRIMA41_12p11.1"; transcript_id "PRIMA41_12p11.1"; locus "PRIMA41_12p11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0098"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4519"; repStart "-1593"; chr12 rmsk exon 34169330 34170581 11842 - . gene_id "PRIMA41_12p11.1"; transcript_id "PRIMA41_12p11.1"; locus "PRIMA41_12p11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0098"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "3258"; repStart "-3238"; chr12 rmsk exon 34170898 34172526 11842 - . gene_id "PRIMA41_12p11.1"; transcript_id "PRIMA41_12p11.1"; locus "PRIMA41_12p11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0098"; repClass "LTR"; repEnd "3257"; repFamily "ERV1"; repLeft "1582"; repStart "-4499"; chr12 rmsk exon 34172682 34172852 260 - . gene_id "PRIMA41_12p11.1"; transcript_id "PRIMA41_12p11.1"; locus "PRIMA41_12p11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0098"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "1269"; repStart "-6310"; ### HERVH_12p11.1 ### chr12 rmsk gene 34265545 34274257 . + . gene_id "HERVH_12p11.1"; transcript_id "HERVH_12p11.1"; locus "HERVH_12p11.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0933"; model_cov "7712"; model_pct "100.0"; chr12 rmsk exon 34265545 34266042 3152 + . gene_id "HERVH_12p11.1"; transcript_id "HERVH_12p11.1"; locus "HERVH_12p11.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0933"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 34266045 34273757 70368 + . gene_id "HERVH_12p11.1"; transcript_id "HERVH_12p11.1"; locus "HERVH_12p11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0933"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 34273758 34274257 3042 + . gene_id "HERVH_12p11.1"; transcript_id "HERVH_12p11.1"; locus "HERVH_12p11.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0933"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVK11_12p11.1a ### chr12 rmsk gene 34461079 34463027 . - . gene_id "HERVK11_12p11.1a"; transcript_id "HERVK11_12p11.1a"; locus "HERVK11_12p11.1a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0078"; model_cov "823"; model_pct "10.3"; chr12 rmsk exon 34461079 34462138 5873 - . gene_id "HERVK11_12p11.1a"; transcript_id "HERVK11_12p11.1a"; locus "HERVK11_12p11.1a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0078"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 34462139 34462735 4524 - . gene_id "HERVK11_12p11.1a"; transcript_id "HERVK11_12p11.1a"; locus "HERVK11_12p11.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0078"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "7353"; repStart "0"; chr12 rmsk exon 34462741 34462964 1698 - . gene_id "HERVK11_12p11.1a"; transcript_id "HERVK11_12p11.1a"; locus "HERVK11_12p11.1a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0078"; repClass "LTR"; repEnd "6551"; repFamily "ERVK"; repLeft "6328"; repStart "-1402"; chr12 rmsk exon 34462965 34463027 395 - . gene_id "HERVK11_12p11.1a"; transcript_id "HERVK11_12p11.1a"; locus "HERVK11_12p11.1a"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0078"; repClass "LTR"; repEnd "62"; repFamily "ERVK"; repLeft "1"; repStart "-1204"; ### HERVK11_12p11.1b ### chr12 rmsk gene 34521109 34530751 . + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0079"; model_cov "7564"; model_pct "95.1"; chr12 rmsk exon 34521109 34522168 7753 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 34522169 34525686 47314 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "3565"; repFamily "ERVK"; repLeft "-4388"; repStart "1"; chr12 rmsk exon 34525750 34528904 47314 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "3566"; chr12 rmsk exon 34528888 34528950 328 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "7015"; repFamily "ERVK"; repLeft "-938"; repStart "6953"; chr12 rmsk exon 34528946 34529682 5873 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "7214"; chr12 rmsk exon 34529683 34530751 7555 + . gene_id "HERVK11_12p11.1b"; transcript_id "HERVK11_12p11.1b"; locus "HERVK11_12p11.1b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0079"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_12p11.1 ### chr12 rmsk gene 34619620 34629282 . - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0093"; model_cov "7199"; model_pct "95.5"; chr12 rmsk exon 34619620 34620533 4503 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 34620629 34621290 5119 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6780"; repStart "-95"; chr12 rmsk exon 34621720 34627344 41180 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "6777"; repFamily "ERVK"; repLeft "1130"; repStart "-759"; chr12 rmsk exon 34627339 34627473 876 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "877"; repFamily "ERVK"; repLeft "743"; repStart "-6659"; chr12 rmsk exon 34627553 34628301 4435 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr12 rmsk exon 34628302 34629282 5536 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0"; ### ERVLE_12q11 ### chr12 rmsk gene 37499752 37501384 . + . gene_id "ERVLE_12q11"; transcript_id "ERVLE_12q11"; locus "ERVLE_12q11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2694"; model_cov "1369"; model_pct "24.2"; chr12 rmsk exon 37499752 37499928 429 + . gene_id "ERVLE_12q11"; transcript_id "ERVLE_12q11"; locus "ERVLE_12q11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2694"; repClass "LTR"; repEnd "2998"; repFamily "ERVL"; repLeft "-2669"; repStart "2816"; chr12 rmsk exon 37500148 37500347 326 + . gene_id "ERVLE_12q11"; transcript_id "ERVLE_12q11"; locus "ERVLE_12q11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2694"; repClass "LTR"; repEnd "3566"; repFamily "ERVL"; repLeft "-2101"; repStart "3365"; chr12 rmsk exon 37500394 37501384 2104 + . gene_id "ERVLE_12q11"; transcript_id "ERVLE_12q11"; locus "ERVLE_12q11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2694"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "4247"; ### HERVW_12q12a ### chr12 rmsk gene 38028269 38031180 . - . gene_id "HERVW_12q12a"; transcript_id "HERVW_12q12a"; locus "HERVW_12q12a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0228"; model_cov "3098"; model_pct "35.9"; chr12 rmsk exon 38028269 38028594 2293 - . gene_id "HERVW_12q12a"; transcript_id "HERVW_12q12a"; locus "HERVW_12q12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0228"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr12 rmsk exon 38028595 38029821 9095 - . gene_id "HERVW_12q12a"; transcript_id "HERVW_12q12a"; locus "HERVW_12q12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0228"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7397"; repStart "0"; chr12 rmsk exon 38029805 38031180 8878 - . gene_id "HERVW_12q12a"; transcript_id "HERVW_12q12a"; locus "HERVW_12q12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0228"; repClass "LTR"; repEnd "5679"; repFamily "ERV1"; repLeft "3810"; repStart "-2947"; ### HERVK11D_12q12 ### chr12 rmsk gene 38122839 38130125 . + . gene_id "HERVK11D_12q12"; transcript_id "HERVK11D_12q12"; locus "HERVK11D_12q12"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0019"; model_cov "5538"; model_pct "71.4"; chr12 rmsk exon 38122839 38123706 6848 + . gene_id "HERVK11D_12q12"; transcript_id "HERVK11D_12q12"; locus "HERVK11D_12q12"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0019"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 38123716 38124571 6271 + . gene_id "HERVK11D_12q12"; transcript_id "HERVK11D_12q12"; locus "HERVK11D_12q12"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0019"; repClass "LTR"; repEnd "862"; repFamily "ERVK"; repLeft "-6890"; repStart "10"; chr12 rmsk exon 38124565 38129253 37288 + . gene_id "HERVK11D_12q12"; transcript_id "HERVK11D_12q12"; locus "HERVK11D_12q12"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0019"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "3066"; chr12 rmsk exon 38129276 38130125 6249 + . gene_id "HERVK11D_12q12"; transcript_id "HERVK11D_12q12"; locus "HERVK11D_12q12"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0019"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "25"; ### PRIMA41_12q12 ### chr12 rmsk gene 38195748 38201362 . + . gene_id "PRIMA41_12q12"; transcript_id "PRIMA41_12q12"; locus "PRIMA41_12q12"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0099"; model_cov "4598"; model_pct "59.3"; chr12 rmsk exon 38195748 38195918 251 + . gene_id "PRIMA41_12q12"; transcript_id "PRIMA41_12q12"; locus "PRIMA41_12q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0099"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "-6310"; repStart "1269"; chr12 rmsk exon 38196069 38197703 9753 + . gene_id "PRIMA41_12q12"; transcript_id "PRIMA41_12q12"; locus "PRIMA41_12q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0099"; repClass "LTR"; repEnd "3259"; repFamily "ERV1"; repLeft "-4497"; repStart "1577"; chr12 rmsk exon 38198020 38199276 9753 + . gene_id "PRIMA41_12q12"; transcript_id "PRIMA41_12q12"; locus "PRIMA41_12q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0099"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "3260"; chr12 rmsk exon 38199934 38201362 9753 + . gene_id "PRIMA41_12q12"; transcript_id "PRIMA41_12q12"; locus "PRIMA41_12q12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0099"; repClass "LTR"; repEnd "6000"; repFamily "ERV1"; repLeft "-1756"; repStart "4519"; ### ERV316A3_12q12a ### chr12 rmsk gene 38258215 38260254 . + . gene_id "ERV316A3_12q12a"; transcript_id "ERV316A3_12q12a"; locus "ERV316A3_12q12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2072"; model_cov "971"; model_pct "18.6"; chr12 rmsk exon 38258215 38258544 1123 + . gene_id "ERV316A3_12q12a"; transcript_id "ERV316A3_12q12a"; locus "ERV316A3_12q12a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2072"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "124"; chr12 rmsk exon 38258585 38259326 1426 + . gene_id "ERV316A3_12q12a"; transcript_id "ERV316A3_12q12a"; locus "ERV316A3_12q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2072"; repClass "LTR"; repEnd "806"; repFamily "ERVL"; repLeft "-4420"; repStart "61"; chr12 rmsk exon 38260035 38260254 1017 + . gene_id "ERV316A3_12q12a"; transcript_id "ERV316A3_12q12a"; locus "ERV316A3_12q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2072"; repClass "LTR"; repEnd "1033"; repFamily "ERVL"; repLeft "-4193"; repStart "807"; ### HERVL_12q12a ### chr12 rmsk gene 38423264 38426005 . - . gene_id "HERVL_12q12a"; transcript_id "HERVL_12q12a"; locus "HERVL_12q12a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0961"; model_cov "2743"; model_pct "48.5"; chr12 rmsk exon 38423264 38426005 20998 - . gene_id "HERVL_12q12a"; transcript_id "HERVL_12q12a"; locus "HERVL_12q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0961"; repClass "LTR"; repEnd "4887"; repFamily "ERVL"; repLeft "2144"; repStart "-767"; ### HERVW_12q12b ### chr12 rmsk gene 38471581 38474423 . + . gene_id "HERVW_12q12b"; transcript_id "HERVW_12q12b"; locus "HERVW_12q12b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0229"; model_cov "2554"; model_pct "29.6"; chr12 rmsk exon 38471581 38473789 18758 + . gene_id "HERVW_12q12b"; transcript_id "HERVW_12q12b"; locus "HERVW_12q12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0229"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3794"; chr12 rmsk exon 38473783 38473821 291 + . gene_id "HERVW_12q12b"; transcript_id "HERVW_12q12b"; locus "HERVW_12q12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0229"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr12 rmsk exon 38473812 38474098 2357 + . gene_id "HERVW_12q12b"; transcript_id "HERVW_12q12b"; locus "HERVW_12q12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0229"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 38474099 38474423 2430 + . gene_id "HERVW_12q12b"; transcript_id "HERVW_12q12b"; locus "HERVW_12q12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0229"; repClass "LTR"; repEnd "325"; repFamily "ERV1"; repLeft "-455"; repStart "1"; ### ERV316A3_12q12b ### chr12 rmsk gene 38563664 38569169 . + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2073"; model_cov "4251"; model_pct "81.3"; chr12 rmsk exon 38563664 38564076 1025 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 38564081 38564276 293 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-4793"; repStart "235"; chr12 rmsk exon 38564298 38566908 6541 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2142"; repStart "405"; chr12 rmsk exon 38566919 38567146 259 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "4023"; repFamily "ERVL"; repLeft "-1203"; repStart "3799"; chr12 rmsk exon 38567512 38568625 2963 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "-207"; repStart "3869"; chr12 rmsk exon 38568794 38569169 1421 + . gene_id "ERV316A3_12q12b"; transcript_id "ERV316A3_12q12b"; locus "ERV316A3_12q12b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2073"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-50"; repStart "15"; ### HERVW_12q12c ### chr12 rmsk gene 38636501 38641551 . + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0230"; model_cov "4276"; model_pct "49.6"; chr12 rmsk exon 38636501 38637007 3302 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr12 rmsk exon 38637010 38638996 14498 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "-6619"; repStart "1"; chr12 rmsk exon 38638989 38640315 10509 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "2430"; chr12 rmsk exon 38640295 38640907 5069 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "-2604"; repStart "5405"; chr12 rmsk exon 38640898 38640936 276 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr12 rmsk exon 38640927 38641221 2317 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 38641222 38641551 2350 + . gene_id "HERVW_12q12c"; transcript_id "HERVW_12q12c"; locus "HERVW_12q12c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0230"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_12q12a ### chr12 rmsk gene 38923607 38924220 . - . gene_id "ERVLE_12q12a"; transcript_id "ERVLE_12q12a"; locus "ERVLE_12q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2696"; model_cov "616"; model_pct "10.9"; chr12 rmsk exon 38923607 38923656 805 - . gene_id "ERVLE_12q12a"; transcript_id "ERVLE_12q12a"; locus "ERVLE_12q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2696"; repClass "LTR"; repEnd "5365"; repFamily "ERVL"; repLeft "5310"; repStart "-302"; chr12 rmsk exon 38923684 38924220 805 - . gene_id "ERVLE_12q12a"; transcript_id "ERVLE_12q12a"; locus "ERVLE_12q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2696"; repClass "LTR"; repEnd "5309"; repFamily "ERVL"; repLeft "4748"; repStart "-358"; ### HERVIP10F_12q12 ### chr12 rmsk gene 38930939 38938679 . - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0083"; model_cov "6274"; model_pct "81.1"; chr12 rmsk exon 38930939 38931409 2389 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "2"; repStart "-63"; chr12 rmsk exon 38931432 38931483 233 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "51"; repFamily "ERV1"; repLeft "1"; repStart "-496"; chr12 rmsk exon 38931486 38933935 15729 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "7736"; repFamily "ERV1"; repLeft "5268"; repStart "-1"; chr12 rmsk exon 38933937 38934003 286 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "5281"; repFamily "ERV1"; repLeft "5214"; repStart "-2456"; chr12 rmsk exon 38933991 38935867 12939 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "3077"; repStart "-2799"; chr12 rmsk exon 38936160 38936727 12939 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "3076"; repFamily "ERV1"; repLeft "2507"; repStart "-4661"; chr12 rmsk exon 38936715 38937178 2143 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "1716"; repFamily "ERV1"; repLeft "1252"; repStart "-6021"; chr12 rmsk exon 38937254 38938115 2263 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "798"; repFamily "ERV1"; repLeft "-47"; repStart "-6939"; chr12 rmsk exon 38938132 38938605 2529 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "2"; repStart "-64"; chr12 rmsk exon 38938628 38938679 233 - . gene_id "HERVIP10F_12q12"; transcript_id "HERVIP10F_12q12"; locus "HERVIP10F_12q12"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0083"; repClass "LTR"; repEnd "51"; repFamily "ERV1"; repLeft "1"; repStart "-496"; ### ERVLE_12q12b ### chr12 rmsk gene 38954732 38956346 . - . gene_id "ERVLE_12q12b"; transcript_id "ERVLE_12q12b"; locus "ERVLE_12q12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2698"; model_cov "955"; model_pct "16.9"; chr12 rmsk exon 38954732 38954866 699 - . gene_id "ERVLE_12q12b"; transcript_id "ERVLE_12q12b"; locus "ERVLE_12q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2698"; repClass "LTR"; repEnd "5524"; repFamily "ERVL"; repLeft "5389"; repStart "-143"; chr12 rmsk exon 38955467 38955931 699 - . gene_id "ERVLE_12q12b"; transcript_id "ERVLE_12q12b"; locus "ERVLE_12q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2698"; repClass "LTR"; repEnd "5388"; repFamily "ERVL"; repLeft "4908"; repStart "-279"; chr12 rmsk exon 38956002 38956346 620 - . gene_id "ERVLE_12q12b"; transcript_id "ERVLE_12q12b"; locus "ERVLE_12q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2698"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4378"; repStart "-949"; ### ERVLE_12q12c ### chr12 rmsk gene 39132420 39133359 . + . gene_id "ERVLE_12q12c"; transcript_id "ERVLE_12q12c"; locus "ERVLE_12q12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2699"; model_cov "948"; model_pct "16.7"; chr12 rmsk exon 39132420 39133359 1438 + . gene_id "ERVLE_12q12c"; transcript_id "ERVLE_12q12c"; locus "ERVLE_12q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2699"; repClass "LTR"; repEnd "2462"; repFamily "ERVL"; repLeft "-3205"; repStart "1514"; ### HML3_12q12a ### chr12 rmsk gene 39188962 39192190 . - . gene_id "HML3_12q12a"; transcript_id "HML3_12q12a"; locus "HML3_12q12a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0170"; model_cov "2790"; model_pct "46.3"; chr12 rmsk exon 39188962 39189492 4166 - . gene_id "HML3_12q12a"; transcript_id "HML3_12q12a"; locus "HML3_12q12a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0170"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 39189493 39191695 15588 - . gene_id "HML3_12q12a"; transcript_id "HML3_12q12a"; locus "HML3_12q12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0170"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr12 rmsk exon 39191696 39192190 4097 - . gene_id "HML3_12q12a"; transcript_id "HML3_12q12a"; locus "HML3_12q12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0170"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2306"; repStart "-3223"; ### HML3_12q12b ### chr12 rmsk gene 39197559 39201222 . - . gene_id "HML3_12q12b"; transcript_id "HML3_12q12b"; locus "HML3_12q12b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0171"; model_cov "2306"; model_pct "38.3"; chr12 rmsk exon 39197559 39198180 5122 - . gene_id "HML3_12q12b"; transcript_id "HML3_12q12b"; locus "HML3_12q12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0171"; repClass "LTR"; repEnd "2298"; repFamily "ERVK"; repLeft "1677"; repStart "-3723"; chr12 rmsk exon 39199026 39200710 12942 - . gene_id "HML3_12q12b"; transcript_id "HML3_12q12b"; locus "HML3_12q12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0171"; repClass "LTR"; repEnd "1686"; repFamily "ERVK"; repLeft "1"; repStart "-4335"; chr12 rmsk exon 39200711 39201222 4399 - . gene_id "HML3_12q12b"; transcript_id "HML3_12q12b"; locus "HML3_12q12b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0171"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_12q12a ### chr12 rmsk gene 39249724 39252970 . + . gene_id "ERVLB4_12q12a"; transcript_id "ERVLB4_12q12a"; locus "ERVLB4_12q12a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1275"; model_cov "2741"; model_pct "48.0"; chr12 rmsk exon 39249724 39249888 764 + . gene_id "ERVLB4_12q12a"; transcript_id "ERVLB4_12q12a"; locus "ERVLB4_12q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1275"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "-390"; repStart "1"; chr12 rmsk exon 39249889 39252574 15143 + . gene_id "ERVLB4_12q12a"; transcript_id "ERVLB4_12q12a"; locus "ERVLB4_12q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1275"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "2973"; chr12 rmsk exon 39252577 39252970 1525 + . gene_id "ERVLB4_12q12a"; transcript_id "ERVLB4_12q12a"; locus "ERVLB4_12q12a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1275"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-2"; repStart "3"; ### HUERSP1_12q12 ### chr12 rmsk gene 39543949 39545300 . - . gene_id "HUERSP1_12q12"; transcript_id "HUERSP1_12q12"; locus "HUERSP1_12q12"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0148"; model_cov "638"; model_pct "10.2"; chr12 rmsk exon 39543949 39544637 5571 - . gene_id "HUERSP1_12q12"; transcript_id "HUERSP1_12q12"; locus "HUERSP1_12q12"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0148"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 39544638 39545300 4938 - . gene_id "HUERSP1_12q12"; transcript_id "HUERSP1_12q12"; locus "HUERSP1_12q12"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0148"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5625"; repStart "0"; ### MER4_12q12a ### chr12 rmsk gene 40160628 40165076 . - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0575"; model_cov "3367"; model_pct "51.0"; chr12 rmsk exon 40160628 40161095 3294 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0575"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 40161104 40162138 14964 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0575"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5523"; repStart "-2"; chr12 rmsk exon 40162268 40163671 14964 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0575"; repClass "LTR"; repEnd "5522"; repFamily "ERV1"; repLeft "4070"; repStart "-1076"; chr12 rmsk exon 40164014 40164164 734 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0575"; repClass "LTR"; repEnd "4062"; repFamily "ERV1"; repLeft "3919"; repStart "-2536"; chr12 rmsk exon 40164171 40164732 2732 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0575"; repClass "LTR"; repEnd "3318"; repFamily "ERV1"; repLeft "2737"; repStart "-3280"; chr12 rmsk exon 40164958 40165076 753 - . gene_id "MER4_12q12a"; transcript_id "MER4_12q12a"; locus "MER4_12q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0575"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "2376"; repStart "-4104"; ### MER4_12q12b ### chr12 rmsk gene 40187163 40191467 . - . gene_id "MER4_12q12b"; transcript_id "MER4_12q12b"; locus "MER4_12q12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0576"; model_cov "4832"; model_pct "73.2"; chr12 rmsk exon 40187163 40187651 3303 - . gene_id "MER4_12q12b"; transcript_id "MER4_12q12b"; locus "MER4_12q12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0576"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 40187653 40188348 15435 - . gene_id "MER4_12q12b"; transcript_id "MER4_12q12b"; locus "MER4_12q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0576"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5888"; repStart "0"; chr12 rmsk exon 40188656 40190883 15435 - . gene_id "MER4_12q12b"; transcript_id "MER4_12q12b"; locus "MER4_12q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0576"; repClass "LTR"; repEnd "5887"; repFamily "ERV1"; repLeft "2149"; repStart "-711"; chr12 rmsk exon 40191173 40191467 9340 - . gene_id "MER4_12q12b"; transcript_id "MER4_12q12b"; locus "MER4_12q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0576"; repClass "LTR"; repEnd "3031"; repFamily "ERV1"; repLeft "2647"; repStart "-3567"; ### MER4_12q12c ### chr12 rmsk gene 40191686 40193336 . - . gene_id "MER4_12q12c"; transcript_id "MER4_12q12c"; locus "MER4_12q12c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0577"; model_cov "1893"; model_pct "28.7"; chr12 rmsk exon 40191686 40192364 9340 - . gene_id "MER4_12q12c"; transcript_id "MER4_12q12c"; locus "MER4_12q12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0577"; repClass "LTR"; repEnd "3031"; repFamily "ERV1"; repLeft "2141"; repStart "-3567"; chr12 rmsk exon 40192376 40193336 5444 - . gene_id "MER4_12q12c"; transcript_id "MER4_12q12c"; locus "MER4_12q12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0577"; repClass "LTR"; repEnd "1032"; repFamily "ERV1"; repLeft "29"; repStart "-5566"; ### MER4_12q12d ### chr12 rmsk gene 40193379 40194785 . - . gene_id "MER4_12q12d"; transcript_id "MER4_12q12d"; locus "MER4_12q12d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0578"; model_cov "760"; model_pct "11.5"; chr12 rmsk exon 40193379 40193652 1058 - . gene_id "MER4_12q12d"; transcript_id "MER4_12q12d"; locus "MER4_12q12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0578"; repClass "LTR"; repEnd "2434"; repFamily "ERV1"; repLeft "2161"; repStart "-4164"; chr12 rmsk exon 40193708 40193794 316 - . gene_id "MER4_12q12d"; transcript_id "MER4_12q12d"; locus "MER4_12q12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0578"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr12 rmsk exon 40193878 40194316 2182 - . gene_id "MER4_12q12d"; transcript_id "MER4_12q12d"; locus "MER4_12q12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0578"; repClass "LTR"; repEnd "-1225"; repFamily "ERV1"; repLeft "-1629"; repStart "-7823"; chr12 rmsk exon 40194317 40194785 3258 - . gene_id "MER4_12q12d"; transcript_id "MER4_12q12d"; locus "MER4_12q12d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0578"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_12q12e ### chr12 rmsk gene 40210828 40213880 . + . gene_id "MER4_12q12e"; transcript_id "MER4_12q12e"; locus "MER4_12q12e"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0579"; model_cov "2396"; model_pct "36.3"; chr12 rmsk exon 40210828 40211062 1726 + . gene_id "MER4_12q12e"; transcript_id "MER4_12q12e"; locus "MER4_12q12e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0579"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "-237"; repStart "1"; chr12 rmsk exon 40211063 40211910 13723 + . gene_id "MER4_12q12e"; transcript_id "MER4_12q12e"; locus "MER4_12q12e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0579"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "-1764"; repStart "3940"; chr12 rmsk exon 40212210 40213662 13723 + . gene_id "MER4_12q12e"; transcript_id "MER4_12q12e"; locus "MER4_12q12e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0579"; repClass "LTR"; repEnd "6337"; repFamily "ERV1"; repLeft "-261"; repStart "4835"; chr12 rmsk exon 40213663 40213880 1206 + . gene_id "MER4_12q12e"; transcript_id "MER4_12q12e"; locus "MER4_12q12e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0579"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "-90"; repStart "-7"; ### HERVW_12q12d ### chr12 rmsk gene 40383636 40389538 . + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0231"; model_cov "4049"; model_pct "46.9"; chr12 rmsk exon 40383636 40384413 5205 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 40384426 40385112 4903 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-7919"; repStart "11"; chr12 rmsk exon 40385278 40386130 5785 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "1536"; repFamily "ERV1"; repLeft "-7090"; repStart "703"; chr12 rmsk exon 40386311 40386787 3779 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "1537"; chr12 rmsk exon 40386773 40388519 14150 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "4182"; repFamily "ERV1"; repLeft "-4444"; repStart "2430"; chr12 rmsk exon 40388513 40388804 2369 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 40388805 40389538 4592 + . gene_id "HERVW_12q12d"; transcript_id "HERVW_12q12d"; locus "HERVW_12q12d"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0231"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_12q12d ### chr12 rmsk gene 40629762 40633482 . + . gene_id "ERVLE_12q12d"; transcript_id "ERVLE_12q12d"; locus "ERVLE_12q12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2701"; model_cov "1074"; model_pct "19.0"; chr12 rmsk exon 40629762 40629987 506 + . gene_id "ERVLE_12q12d"; transcript_id "ERVLE_12q12d"; locus "ERVLE_12q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2701"; repClass "LTR"; repEnd "239"; repFamily "ERVL"; repLeft "-5428"; repStart "8"; chr12 rmsk exon 40631818 40632423 1127 + . gene_id "ERVLE_12q12d"; transcript_id "ERVLE_12q12d"; locus "ERVLE_12q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2701"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "-1033"; repStart "3995"; chr12 rmsk exon 40633280 40633482 388 + . gene_id "ERVLE_12q12d"; transcript_id "ERVLE_12q12d"; locus "ERVLE_12q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2701"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "-510"; repStart "4953"; ### HUERSP3_12q12a ### chr12 rmsk gene 41007410 41013488 . - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0152"; model_cov "4622"; model_pct "51.8"; chr12 rmsk exon 41007410 41008015 3955 - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0152"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr12 rmsk exon 41008017 41008232 1480 - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0152"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8704"; repStart "-1"; chr12 rmsk exon 41008856 41009576 5111 - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0152"; repClass "LTR"; repEnd "5110"; repFamily "ERV1"; repLeft "4387"; repStart "-3809"; chr12 rmsk exon 41009563 41012858 9993 - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0152"; repClass "LTR"; repEnd "3700"; repFamily "ERV1"; repLeft "15"; repStart "-5219"; chr12 rmsk exon 41012874 41013488 4462 - . gene_id "HUERSP3_12q12a"; transcript_id "HUERSP3_12q12a"; locus "HUERSP3_12q12a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0152"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLE_12q12e ### chr12 rmsk gene 41769771 41771459 . + . gene_id "ERVLE_12q12e"; transcript_id "ERVLE_12q12e"; locus "ERVLE_12q12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2703"; model_cov "1078"; model_pct "19.0"; chr12 rmsk exon 41769771 41770660 1962 + . gene_id "ERVLE_12q12e"; transcript_id "ERVLE_12q12e"; locus "ERVLE_12q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2703"; repClass "LTR"; repEnd "4963"; repFamily "ERVL"; repLeft "-704"; repStart "3950"; chr12 rmsk exon 41771394 41771459 276 + . gene_id "ERVLE_12q12e"; transcript_id "ERVLE_12q12e"; locus "ERVLE_12q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2703"; repClass "LTR"; repEnd "5582"; repFamily "ERVL"; repLeft "-85"; repStart "5517"; ### ERVLE_12q12f ### chr12 rmsk gene 42247198 42248910 . - . gene_id "ERVLE_12q12f"; transcript_id "ERVLE_12q12f"; locus "ERVLE_12q12f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2705"; model_cov "970"; model_pct "17.1"; chr12 rmsk exon 42247198 42247863 2028 - . gene_id "ERVLE_12q12f"; transcript_id "ERVLE_12q12f"; locus "ERVLE_12q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2705"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "5001"; repStart "-5"; chr12 rmsk exon 42248616 42248910 2028 - . gene_id "ERVLE_12q12f"; transcript_id "ERVLE_12q12f"; locus "ERVLE_12q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2705"; repClass "LTR"; repEnd "5000"; repFamily "ERVL"; repLeft "4691"; repStart "-667"; ### ERVLE_12q12g ### chr12 rmsk gene 42254980 42256486 . - . gene_id "ERVLE_12q12g"; transcript_id "ERVLE_12q12g"; locus "ERVLE_12q12g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2706"; model_cov "1549"; model_pct "27.3"; chr12 rmsk exon 42254980 42256486 5909 - . gene_id "ERVLE_12q12g"; transcript_id "ERVLE_12q12g"; locus "ERVLE_12q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2706"; repClass "LTR"; repEnd "4701"; repFamily "ERVL"; repLeft "3152"; repStart "-966"; ### HML5_12q12a ### chr12 rmsk gene 42442199 42447156 . + . gene_id "HML5_12q12a"; transcript_id "HML5_12q12a"; locus "HML5_12q12a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0087"; model_cov "5331"; model_pct "78.0"; chr12 rmsk exon 42442199 42442662 2415 + . gene_id "HML5_12q12a"; transcript_id "HML5_12q12a"; locus "HML5_12q12a"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0087"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 42442666 42443554 5956 + . gene_id "HML5_12q12a"; transcript_id "HML5_12q12a"; locus "HML5_12q12a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0087"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "-5932"; repStart "4"; chr12 rmsk exon 42443566 42446699 21177 + . gene_id "HML5_12q12a"; transcript_id "HML5_12q12a"; locus "HML5_12q12a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0087"; repClass "LTR"; repEnd "6833"; repFamily "ERVK"; repLeft "-4"; repStart "2403"; chr12 rmsk exon 42446703 42447156 2052 + . gene_id "HML5_12q12a"; transcript_id "HML5_12q12a"; locus "HML5_12q12a"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0087"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_12q12h ### chr12 rmsk gene 43055727 43056575 . + . gene_id "ERVLE_12q12h"; transcript_id "ERVLE_12q12h"; locus "ERVLE_12q12h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2708"; model_cov "873"; model_pct "15.4"; chr12 rmsk exon 43055727 43056575 2673 + . gene_id "ERVLE_12q12h"; transcript_id "ERVLE_12q12h"; locus "ERVLE_12q12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2708"; repClass "LTR"; repEnd "5656"; repFamily "ERVL"; repLeft "-11"; repStart "4783"; ### ERVLB4_12q12b ### chr12 rmsk gene 43115977 43119389 . - . gene_id "ERVLB4_12q12b"; transcript_id "ERVLB4_12q12b"; locus "ERVLB4_12q12b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1278"; model_cov "2357"; model_pct "41.2"; chr12 rmsk exon 43115977 43116269 1645 - . gene_id "ERVLB4_12q12b"; transcript_id "ERVLB4_12q12b"; locus "ERVLB4_12q12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1278"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "226"; repStart "0"; chr12 rmsk exon 43116270 43116409 12287 - . gene_id "ERVLB4_12q12b"; transcript_id "ERVLB4_12q12b"; locus "ERVLB4_12q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1278"; repClass "LTR"; repEnd "2359"; repFamily "ERVL"; repLeft "2244"; repStart "-3355"; chr12 rmsk exon 43116707 43118891 12287 - . gene_id "ERVLB4_12q12b"; transcript_id "ERVLB4_12q12b"; locus "ERVLB4_12q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1278"; repClass "LTR"; repEnd "2243"; repFamily "ERVL"; repLeft "1"; repStart "-3471"; chr12 rmsk exon 43118892 43119389 2697 - . gene_id "ERVLB4_12q12b"; transcript_id "ERVLB4_12q12b"; locus "ERVLB4_12q12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1278"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_12q12c ### chr12 rmsk gene 43250033 43254826 . - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1279"; model_cov "2754"; model_pct "48.2"; chr12 rmsk exon 43250033 43250996 1751 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "5082"; repFamily "ERVL"; repLeft "4106"; repStart "-632"; chr12 rmsk exon 43251401 43251867 591 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "3795"; repFamily "ERVL"; repLeft "3336"; repStart "-1919"; chr12 rmsk exon 43252063 43252348 328 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2862"; repStart "-2551"; chr12 rmsk exon 43253295 43253634 515 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "2320"; repFamily "ERVL"; repLeft "1987"; repStart "-3394"; chr12 rmsk exon 43253619 43253793 1186 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "1801"; repFamily "ERVL"; repLeft "1629"; repStart "-3913"; chr12 rmsk exon 43254346 43254826 1186 - . gene_id "ERVLB4_12q12c"; transcript_id "ERVLB4_12q12c"; locus "ERVLB4_12q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1279"; repClass "LTR"; repEnd "1628"; repFamily "ERVL"; repLeft "1115"; repStart "-4086"; ### ERV316A3_12q12c ### chr12 rmsk gene 43339349 43341392 . - . gene_id "ERV316A3_12q12c"; transcript_id "ERV316A3_12q12c"; locus "ERV316A3_12q12c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2074"; model_cov "2012"; model_pct "38.5"; chr12 rmsk exon 43339349 43341014 4591 - . gene_id "ERV316A3_12q12c"; transcript_id "ERV316A3_12q12c"; locus "ERV316A3_12q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2074"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "1457"; repStart "-2141"; chr12 rmsk exon 43341012 43341392 1374 - . gene_id "ERV316A3_12q12c"; transcript_id "ERV316A3_12q12c"; locus "ERV316A3_12q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2074"; repClass "LTR"; repEnd "879"; repFamily "ERVL"; repLeft "495"; repStart "-4347"; ### HUERSP3B_12q12 ### chr12 rmsk gene 43699086 43705818 . + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0097"; model_cov "5656"; model_pct "76.2"; chr12 rmsk exon 43699086 43699282 1123 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "-1"; repStart "445"; chr12 rmsk exon 43699283 43699798 2406 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "-6913"; repStart "1"; chr12 rmsk exon 43699914 43701295 4930 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "2337"; repFamily "ERV1"; repLeft "-5081"; repStart "891"; chr12 rmsk exon 43701280 43701483 1184 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-4760"; repStart "2451"; chr12 rmsk exon 43701866 43702674 5955 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chr12 rmsk exon 43702666 43705267 16445 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "4713"; chr12 rmsk exon 43705269 43705818 3241 + . gene_id "HUERSP3B_12q12"; transcript_id "HUERSP3B_12q12"; locus "HUERSP3B_12q12"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0097"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-84"; repStart "1"; ### HML5_12q12b ### chr12 rmsk gene 43976280 43981167 . - . gene_id "HML5_12q12b"; transcript_id "HML5_12q12b"; locus "HML5_12q12b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0088"; model_cov "3814"; model_pct "55.8"; chr12 rmsk exon 43976280 43976747 2525 - . gene_id "HML5_12q12b"; transcript_id "HML5_12q12b"; locus "HML5_12q12b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0088"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 43976748 43979921 22485 - . gene_id "HML5_12q12b"; transcript_id "HML5_12q12b"; locus "HML5_12q12b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0088"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2314"; repStart "-1502"; chr12 rmsk exon 43979905 43980697 5451 - . gene_id "HML5_12q12b"; transcript_id "HML5_12q12b"; locus "HML5_12q12b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0088"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "1"; repStart "-6043"; chr12 rmsk exon 43980698 43981167 2684 - . gene_id "HML5_12q12b"; transcript_id "HML5_12q12b"; locus "HML5_12q12b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0088"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_12q12 ### chr12 rmsk gene 44028334 44033463 . + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0391"; model_cov "6044"; model_pct "100.0"; chr12 rmsk exon 44028334 44028878 4132 + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0391"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 44028965 44029625 3231 + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0391"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-5321"; repStart "1"; chr12 rmsk exon 44029613 44030647 10173 + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0391"; repClass "LTR"; repEnd "3906"; repFamily "ERV1"; repLeft "-2040"; repStart "2351"; chr12 rmsk exon 44030774 44032910 12127 + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0391"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "2079"; chr12 rmsk exon 44032911 44033463 3965 + . gene_id "MER41_12q12"; transcript_id "MER41_12q12"; locus "MER41_12q12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0391"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HERVL_12q12b ### chr12 rmsk gene 44042385 44047187 . + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0962"; model_cov "3896"; model_pct "68.9"; chr12 rmsk exon 44042385 44042761 2975 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "-61"; repStart "1"; chr12 rmsk exon 44042810 44042846 2975 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-3"; repStart "384"; chr12 rmsk exon 44042849 44044220 9938 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "-4247"; repStart "1"; chr12 rmsk exon 44044208 44045561 16823 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "4521"; repFamily "ERVL"; repLeft "-1133"; repStart "3162"; chr12 rmsk exon 44045837 44045998 16823 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "4685"; repFamily "ERVL"; repLeft "-969"; repStart "4522"; chr12 rmsk exon 44046060 44047009 16823 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4686"; chr12 rmsk exon 44047010 44047114 692 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "105"; repFamily "ERVL"; repLeft "-339"; repStart "1"; chr12 rmsk exon 44047134 44047187 261 + . gene_id "HERVL_12q12b"; transcript_id "HERVL_12q12b"; locus "HERVL_12q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0962"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "392"; ### ERV316A3_12q12d ### chr12 rmsk gene 44399803 44403346 . + . gene_id "ERV316A3_12q12d"; transcript_id "ERV316A3_12q12d"; locus "ERV316A3_12q12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2076"; model_cov "2621"; model_pct "50.2"; chr12 rmsk exon 44399803 44399974 502 + . gene_id "ERV316A3_12q12d"; transcript_id "ERV316A3_12q12d"; locus "ERV316A3_12q12d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2076"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "-269"; repStart "1"; chr12 rmsk exon 44400215 44400659 854 + . gene_id "ERV316A3_12q12d"; transcript_id "ERV316A3_12q12d"; locus "ERV316A3_12q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2076"; repClass "LTR"; repEnd "1381"; repFamily "ERVL"; repLeft "-3845"; repStart "775"; chr12 rmsk exon 44400994 44401972 5263 + . gene_id "ERV316A3_12q12d"; transcript_id "ERV316A3_12q12d"; locus "ERV316A3_12q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2076"; repClass "LTR"; repEnd "2803"; repFamily "ERVL"; repLeft "-2423"; repStart "1851"; chr12 rmsk exon 44402318 44403346 5263 + . gene_id "ERV316A3_12q12d"; transcript_id "ERV316A3_12q12d"; locus "ERV316A3_12q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2076"; repClass "LTR"; repEnd "3867"; repFamily "ERVL"; repLeft "-1359"; repStart "2804"; ### HERVH_12q12 ### chr12 rmsk gene 44450052 44456067 . + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0934"; model_cov "5067"; model_pct "65.7"; chr12 rmsk exon 44450052 44450463 2626 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 44450466 44450933 2913 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr12 rmsk exon 44450988 44453198 13974 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "793"; chr12 rmsk exon 44453193 44453342 936 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 44453333 44455044 7371 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3492"; chr12 rmsk exon 44455046 44455278 1215 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 44455279 44455655 2249 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 44455656 44456067 2784 + . gene_id "HERVH_12q12"; transcript_id "HERVH_12q12"; locus "HERVH_12q12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0934"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP3_12q12b ### chr12 rmsk gene 44475471 44481684 . + . gene_id "HUERSP3_12q12b"; transcript_id "HUERSP3_12q12b"; locus "HUERSP3_12q12b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0153"; model_cov "5810"; model_pct "65.1"; chr12 rmsk exon 44475471 44476079 4208 + . gene_id "HUERSP3_12q12b"; transcript_id "HUERSP3_12q12b"; locus "HUERSP3_12q12b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0153"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 44476095 44479629 10786 + . gene_id "HUERSP3_12q12b"; transcript_id "HUERSP3_12q12b"; locus "HUERSP3_12q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0153"; repClass "LTR"; repEnd "3782"; repFamily "ERV1"; repLeft "-5137"; repStart "15"; chr12 rmsk exon 44479625 44479744 686 + . gene_id "HUERSP3_12q12b"; transcript_id "HUERSP3_12q12b"; locus "HUERSP3_12q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0153"; repClass "LTR"; repEnd "3975"; repFamily "ERV1"; repLeft "-4944"; repStart "3873"; chr12 rmsk exon 44479734 44481684 13364 + . gene_id "HUERSP3_12q12b"; transcript_id "HUERSP3_12q12b"; locus "HUERSP3_12q12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0153"; repClass "LTR"; repEnd "6171"; repFamily "ERV1"; repLeft "-2748"; repStart "4230"; ### ERV316A3_12q12e ### chr12 rmsk gene 45546734 45548929 . - . gene_id "ERV316A3_12q12e"; transcript_id "ERV316A3_12q12e"; locus "ERV316A3_12q12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2077"; model_cov "1212"; model_pct "23.2"; chr12 rmsk exon 45546734 45546982 1021 - . gene_id "ERV316A3_12q12e"; transcript_id "ERV316A3_12q12e"; locus "ERV316A3_12q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2077"; repClass "LTR"; repEnd "4306"; repFamily "ERVL"; repLeft "4055"; repStart "-920"; chr12 rmsk exon 45547036 45547956 2638 - . gene_id "ERV316A3_12q12e"; transcript_id "ERV316A3_12q12e"; locus "ERV316A3_12q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2077"; repClass "LTR"; repEnd "1056"; repFamily "ERVL"; repLeft "95"; repStart "-4170"; chr12 rmsk exon 45548550 45548929 960 - . gene_id "ERV316A3_12q12e"; transcript_id "ERV316A3_12q12e"; locus "ERV316A3_12q12e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2077"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_12q12d ### chr12 rmsk gene 45584263 45588528 . + . gene_id "ERVLB4_12q12d"; transcript_id "ERVLB4_12q12d"; locus "ERVLB4_12q12d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1280"; model_cov "2345"; model_pct "41.0"; chr12 rmsk exon 45584263 45585411 7015 + . gene_id "ERVLB4_12q12d"; transcript_id "ERVLB4_12q12d"; locus "ERVLB4_12q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1280"; repClass "LTR"; repEnd "4574"; repFamily "ERVL"; repLeft "-1140"; repStart "3377"; chr12 rmsk exon 45586860 45588001 6956 + . gene_id "ERVLB4_12q12d"; transcript_id "ERVLB4_12q12d"; locus "ERVLB4_12q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1280"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4566"; chr12 rmsk exon 45588002 45588528 3084 + . gene_id "ERVLB4_12q12d"; transcript_id "ERVLB4_12q12d"; locus "ERVLB4_12q12d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1280"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_12q13.11a ### chr12 rmsk gene 46001643 46004796 . - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2078"; model_cov "1714"; model_pct "32.8"; chr12 rmsk exon 46001643 46001813 874 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "260"; repStart "-4"; chr12 rmsk exon 46001864 46002010 497 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "2"; repStart "-291"; chr12 rmsk exon 46002032 46002219 2527 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "4988"; repStart "-44"; chr12 rmsk exon 46002568 46003225 2527 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "4303"; repStart "-239"; chr12 rmsk exon 46003239 46003925 2332 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "4244"; repFamily "ERVL"; repLeft "3501"; repStart "-982"; chr12 rmsk exon 46004703 46004796 323 - . gene_id "ERV316A3_12q13.11a"; transcript_id "ERV316A3_12q13.11a"; locus "ERV316A3_12q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2078"; repClass "LTR"; repEnd "2887"; repFamily "ERVL"; repLeft "2794"; repStart "-2339"; ### HERVH_12q13.11a ### chr12 rmsk gene 46031918 46037041 . + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0935"; model_cov "3907"; model_pct "50.7"; chr12 rmsk exon 46031918 46032822 7388 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "2588"; repFamily "ERV1"; repLeft "-5125"; repStart "1677"; chr12 rmsk exon 46033131 46033553 7388 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "2991"; repFamily "ERV1"; repLeft "-4722"; repStart "2589"; chr12 rmsk exon 46033540 46035319 10773 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "-2803"; repStart "3140"; chr12 rmsk exon 46035320 46035588 1520 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5747"; chr12 rmsk exon 46035582 46035906 3402 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "7453"; repFamily "ERV1"; repLeft "-260"; repStart "7157"; chr12 rmsk exon 46036336 46036578 3402 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7454"; chr12 rmsk exon 46036579 46037041 3942 + . gene_id "HERVH_12q13.11a"; transcript_id "HERVH_12q13.11a"; locus "HERVH_12q13.11a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0935"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLB_12q13.11 ### chr12 rmsk gene 46090550 46095133 . + . gene_id "PABLB_12q13.11"; transcript_id "PABLB_12q13.11"; locus "PABLB_12q13.11"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0073"; model_cov "5042"; model_pct "70.8"; chr12 rmsk exon 46090550 46093142 2653 + . gene_id "PABLB_12q13.11"; transcript_id "PABLB_12q13.11"; locus "PABLB_12q13.11"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0073"; repClass "LTR"; repEnd "3600"; repFamily "ERV1"; repLeft "-3522"; repStart "291"; chr12 rmsk exon 46093431 46095133 1808 + . gene_id "PABLB_12q13.11"; transcript_id "PABLB_12q13.11"; locus "PABLB_12q13.11"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0073"; repClass "LTR"; repEnd "6374"; repFamily "ERV1"; repLeft "-748"; repStart "4641"; ### MER41_12q13.11 ### chr12 rmsk gene 46253205 46258347 . - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0392"; model_cov "3598"; model_pct "60.5"; chr12 rmsk exon 46253205 46253756 4250 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0392"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 46253757 46255325 5485 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0392"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4250"; repStart "-2"; chr12 rmsk exon 46255345 46255881 4764 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0392"; repClass "LTR"; repEnd "3592"; repFamily "ERV1"; repLeft "3059"; repStart "-2354"; chr12 rmsk exon 46256187 46256602 4764 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0392"; repClass "LTR"; repEnd "3058"; repFamily "ERV1"; repLeft "2765"; repStart "-2888"; chr12 rmsk exon 46256662 46257596 5016 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0392"; repClass "LTR"; repEnd "1079"; repFamily "ERV1"; repLeft "1"; repStart "-4867"; chr12 rmsk exon 46257833 46258347 3651 - . gene_id "MER41_12q13.11"; transcript_id "MER41_12q13.11"; locus "MER41_12q13.11"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0392"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_12q13.11b ### chr12 rmsk gene 46321305 46326337 . - . gene_id "HERVH_12q13.11b"; transcript_id "HERVH_12q13.11b"; locus "HERVH_12q13.11b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0936"; model_cov "4627"; model_pct "60.0"; chr12 rmsk exon 46321305 46321698 2030 - . gene_id "HERVH_12q13.11b"; transcript_id "HERVH_12q13.11b"; locus "HERVH_12q13.11b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0936"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr12 rmsk exon 46321699 46326337 30652 - . gene_id "HERVH_12q13.11b"; transcript_id "HERVH_12q13.11b"; locus "HERVH_12q13.11b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0936"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3086"; repStart "0"; ### ERVLE_12q13.11a ### chr12 rmsk gene 46718316 46720207 . - . gene_id "ERVLE_12q13.11a"; transcript_id "ERVLE_12q13.11a"; locus "ERVLE_12q13.11a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2712"; model_cov "849"; model_pct "15.0"; chr12 rmsk exon 46718316 46718491 460 - . gene_id "ERVLE_12q13.11a"; transcript_id "ERVLE_12q13.11a"; locus "ERVLE_12q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2712"; repClass "LTR"; repEnd "1086"; repFamily "ERVL"; repLeft "909"; repStart "-4581"; chr12 rmsk exon 46718980 46719138 283 - . gene_id "ERVLE_12q13.11a"; transcript_id "ERVLE_12q13.11a"; locus "ERVLE_12q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2712"; repClass "LTR"; repEnd "889"; repFamily "ERVL"; repLeft "741"; repStart "-4778"; chr12 rmsk exon 46719243 46719405 743 - . gene_id "ERVLE_12q13.11a"; transcript_id "ERVLE_12q13.11a"; locus "ERVLE_12q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2712"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "435"; repStart "-5089"; chr12 rmsk exon 46719831 46720207 743 - . gene_id "ERVLE_12q13.11a"; transcript_id "ERVLE_12q13.11a"; locus "ERVLE_12q13.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2712"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "53"; repStart "-5233"; ### HERVL_12q13.11a ### chr12 rmsk gene 46727181 46734247 . - . gene_id "HERVL_12q13.11a"; transcript_id "HERVL_12q13.11a"; locus "HERVL_12q13.11a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0963"; model_cov "5657"; model_pct "100.0"; chr12 rmsk exon 46727181 46727630 3050 - . gene_id "HERVL_12q13.11a"; transcript_id "HERVL_12q13.11a"; locus "HERVL_12q13.11a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0963"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 46727631 46731599 30041 - . gene_id "HERVL_12q13.11a"; transcript_id "HERVL_12q13.11a"; locus "HERVL_12q13.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0963"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1645"; repStart "0"; chr12 rmsk exon 46732133 46733795 12678 - . gene_id "HERVL_12q13.11a"; transcript_id "HERVL_12q13.11a"; locus "HERVL_12q13.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0963"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "1"; repStart "-4005"; chr12 rmsk exon 46733796 46734247 3201 - . gene_id "HERVL_12q13.11a"; transcript_id "HERVL_12q13.11a"; locus "HERVL_12q13.11a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0963"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4_12q13.11 ### chr12 rmsk gene 46855043 46860881 . - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; category "mergeable*"; intModel "MER4-int"; locid "MER4-int_0581"; model_cov "3761"; model_pct "57.0"; chr12 rmsk exon 46855043 46857398 14565 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "3878"; repStart "-285"; chr12 rmsk exon 46858093 46858134 14565 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "3877"; repFamily "ERV1"; repLeft "3837"; repStart "-2721"; chr12 rmsk exon 46858134 46859043 3754 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "2737"; repStart "-2912"; chr12 rmsk exon 46859280 46859420 997 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2355"; repStart "-4103"; chr12 rmsk exon 46859426 46859768 2407 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0581"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "129"; repStart "0"; chr12 rmsk exon 46859769 46859900 862 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "1125"; repFamily "ERV1"; repLeft "993"; repStart "-5473"; chr12 rmsk exon 46859966 46860029 299 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "752"; repFamily "ERV1"; repLeft "687"; repStart "-5846"; chr12 rmsk exon 46860058 46860129 383 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "741"; repStart "-5786"; chr12 rmsk exon 46860141 46860725 3162 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0581"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr12 rmsk exon 46860729 46860881 1124 - . gene_id "MER4_12q13.11"; transcript_id "MER4_12q13.11"; locus "MER4_12q13.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0581"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "318"; repStart "0"; ### HERVL_12q13.11b ### chr12 rmsk gene 46860882 46867418 . - . gene_id "HERVL_12q13.11b"; transcript_id "HERVL_12q13.11b"; locus "HERVL_12q13.11b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0964"; model_cov "5653"; model_pct "100.0"; chr12 rmsk exon 46860882 46861345 3158 - . gene_id "HERVL_12q13.11b"; transcript_id "HERVL_12q13.11b"; locus "HERVL_12q13.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0964"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 46861346 46866940 44131 - . gene_id "HERVL_12q13.11b"; transcript_id "HERVL_12q13.11b"; locus "HERVL_12q13.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0964"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 46866943 46867418 3141 - . gene_id "HERVL_12q13.11b"; transcript_id "HERVL_12q13.11b"; locus "HERVL_12q13.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0964"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HML3_12q13.11 ### chr12 rmsk gene 47443339 47448766 . - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0172"; model_cov "4419"; model_pct "73.4"; chr12 rmsk exon 47443339 47443849 4419 - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0172"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr12 rmsk exon 47443850 47446136 17901 - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0172"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr12 rmsk exon 47446137 47447652 12027 - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0172"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1280"; repStart "-3223"; chr12 rmsk exon 47447653 47448254 4551 - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0172"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr12 rmsk exon 47448255 47448766 4246 - . gene_id "HML3_12q13.11"; transcript_id "HML3_12q13.11"; locus "HML3_12q13.11"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0172"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HERVH_12q13.11c ### chr12 rmsk gene 48111344 48115676 . - . gene_id "HERVH_12q13.11c"; transcript_id "HERVH_12q13.11c"; locus "HERVH_12q13.11c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0937"; model_cov "3953"; model_pct "51.3"; chr12 rmsk exon 48111344 48112458 5614 - . gene_id "HERVH_12q13.11c"; transcript_id "HERVH_12q13.11c"; locus "HERVH_12q13.11c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0937"; repClass "LTR"; repEnd "5630"; repFamily "ERV1"; repLeft "4199"; repStart "-2083"; chr12 rmsk exon 48112445 48115035 9385 - . gene_id "HERVH_12q13.11c"; transcript_id "HERVH_12q13.11c"; locus "HERVH_12q13.11c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0937"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "590"; repStart "-4721"; chr12 rmsk exon 48115096 48115225 655 - . gene_id "HERVH_12q13.11c"; transcript_id "HERVH_12q13.11c"; locus "HERVH_12q13.11c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0937"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "339"; repStart "-7254"; chr12 rmsk exon 48115248 48115676 3356 - . gene_id "HERVH_12q13.11c"; transcript_id "HERVH_12q13.11c"; locus "HERVH_12q13.11c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0937"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_12q13.11b ### chr12 rmsk gene 48375259 48381227 . + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2713"; model_cov "5089"; model_pct "89.8"; chr12 rmsk exon 48375259 48376123 11934 + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2713"; repClass "LTR"; repEnd "1165"; repFamily "ERVL"; repLeft "-4502"; repStart "272"; chr12 rmsk exon 48376170 48376833 11934 + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2713"; repClass "LTR"; repEnd "1853"; repFamily "ERVL"; repLeft "-3814"; repStart "1166"; chr12 rmsk exon 48377147 48378694 11934 + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2713"; repClass "LTR"; repEnd "3475"; repFamily "ERVL"; repLeft "-2192"; repStart "1854"; chr12 rmsk exon 48378991 48379915 11934 + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2713"; repClass "LTR"; repEnd "4410"; repFamily "ERVL"; repLeft "-1257"; repStart "3476"; chr12 rmsk exon 48380316 48381227 2904 + . gene_id "ERVLE_12q13.11b"; transcript_id "ERVLE_12q13.11b"; locus "ERVLE_12q13.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2713"; repClass "LTR"; repEnd "5361"; repFamily "ERVL"; repLeft "-306"; repStart "4407"; ### HML1_12q13.11 ### chr12 rmsk gene 48506813 48511786 . + . gene_id "HML1_12q13.11"; transcript_id "HML1_12q13.11"; locus "HML1_12q13.11"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0086"; model_cov "4270"; model_pct "70.0"; chr12 rmsk exon 48506813 48507421 3502 + . gene_id "HML1_12q13.11"; transcript_id "HML1_12q13.11"; locus "HML1_12q13.11"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0086"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "11"; chr12 rmsk exon 48507422 48511682 32918 + . gene_id "HML1_12q13.11"; transcript_id "HML1_12q13.11"; locus "HML1_12q13.11"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0086"; repClass "LTR"; repEnd "4271"; repFamily "ERVK"; repLeft "-1825"; repStart "1"; chr12 rmsk exon 48511683 48511786 583 + . gene_id "HML1_12q13.11"; transcript_id "HML1_12q13.11"; locus "HML1_12q13.11"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0086"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "505"; ### HUERSP3B_12q13.11 ### chr12 rmsk gene 48554336 48557131 . - . gene_id "HUERSP3B_12q13.11"; transcript_id "HUERSP3B_12q13.11"; locus "HUERSP3B_12q13.11"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0100"; model_cov "2095"; model_pct "28.2"; chr12 rmsk exon 48554336 48555917 10824 - . gene_id "HUERSP3B_12q13.11"; transcript_id "HUERSP3B_12q13.11"; locus "HUERSP3B_12q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0100"; repClass "LTR"; repEnd "2351"; repFamily "ERV1"; repLeft "764"; repStart "-5067"; chr12 rmsk exon 48555961 48556478 2450 - . gene_id "HUERSP3B_12q13.11"; transcript_id "HUERSP3B_12q13.11"; locus "HUERSP3B_12q13.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0100"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "1"; repStart "-6909"; chr12 rmsk exon 48556479 48557131 4333 - . gene_id "HUERSP3B_12q13.11"; transcript_id "HUERSP3B_12q13.11"; locus "HUERSP3B_12q13.11"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0100"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_12q13.11b ### chr12 rmsk gene 48580315 48581942 . + . gene_id "ERV316A3_12q13.11b"; transcript_id "ERV316A3_12q13.11b"; locus "ERV316A3_12q13.11b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2080"; model_cov "636"; model_pct "12.2"; chr12 rmsk exon 48580315 48580649 1399 + . gene_id "ERV316A3_12q13.11b"; transcript_id "ERV316A3_12q13.11b"; locus "ERV316A3_12q13.11b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2080"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "-10"; chr12 rmsk exon 48580758 48581110 1551 + . gene_id "ERV316A3_12q13.11b"; transcript_id "ERV316A3_12q13.11b"; locus "ERV316A3_12q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2080"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "-350"; repStart "4473"; chr12 rmsk exon 48581413 48581426 1551 + . gene_id "ERV316A3_12q13.11b"; transcript_id "ERV316A3_12q13.11b"; locus "ERV316A3_12q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2080"; repClass "LTR"; repEnd "4881"; repFamily "ERVL"; repLeft "-345"; repStart "4877"; chr12 rmsk exon 48581722 48581942 1551 + . gene_id "ERV316A3_12q13.11b"; transcript_id "ERV316A3_12q13.11b"; locus "ERV316A3_12q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2080"; repClass "LTR"; repEnd "5111"; repFamily "ERVL"; repLeft "-115"; repStart "4882"; ### HERVIP10F_12q13.11 ### chr12 rmsk gene 48600230 48602680 . + . gene_id "HERVIP10F_12q13.11"; transcript_id "HERVIP10F_12q13.11"; locus "HERVIP10F_12q13.11"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0084"; model_cov "2030"; model_pct "26.2"; chr12 rmsk exon 48600230 48602220 9061 + . gene_id "HERVIP10F_12q13.11"; transcript_id "HERVIP10F_12q13.11"; locus "HERVIP10F_12q13.11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0084"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "5705"; chr12 rmsk exon 48602223 48602680 2080 + . gene_id "HERVIP10F_12q13.11"; transcript_id "HERVIP10F_12q13.11"; locus "HERVIP10F_12q13.11"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0084"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_12q13.11c ### chr12 rmsk gene 48628978 48630055 . + . gene_id "HERVL_12q13.11c"; transcript_id "HERVL_12q13.11c"; locus "HERVL_12q13.11c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0965"; model_cov "1027"; model_pct "18.2"; chr12 rmsk exon 48628978 48630055 4071 + . gene_id "HERVL_12q13.11c"; transcript_id "HERVL_12q13.11c"; locus "HERVL_12q13.11c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0965"; repClass "LTR"; repEnd "1696"; repFamily "ERVL"; repLeft "-3958"; repStart "669"; ### ERVLB4_12q13.12a ### chr12 rmsk gene 48897781 48900622 . + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1281"; model_cov "1080"; model_pct "18.9"; chr12 rmsk exon 48897781 48898002 2167 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "4598"; repFamily "ERVL"; repLeft "-1116"; repStart "4374"; chr12 rmsk exon 48898244 48898258 2167 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "-1115"; repStart "4599"; chr12 rmsk exon 48898611 48898845 2167 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "-919"; repStart "4599"; chr12 rmsk exon 48898845 48898946 619 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "5030"; repFamily "ERVL"; repLeft "-684"; repStart "4929"; chr12 rmsk exon 48899547 48900104 3010 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "5585"; repFamily "ERVL"; repLeft "-129"; repStart "5026"; chr12 rmsk exon 48900548 48900622 1965 + . gene_id "ERVLB4_12q13.12a"; transcript_id "ERVLB4_12q13.12a"; locus "ERVLB4_12q13.12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1281"; repClass "LTR"; repEnd "68"; repFamily "ERVL"; repLeft "-488"; repStart "1"; ### HARLEQUIN_12q13.12 ### chr12 rmsk gene 49734957 49740561 . + . gene_id "HARLEQUIN_12q13.12"; transcript_id "HARLEQUIN_12q13.12"; locus "HARLEQUIN_12q13.12"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0141"; model_cov "5332"; model_pct "77.3"; chr12 rmsk exon 49734957 49736004 5502 + . gene_id "HARLEQUIN_12q13.12"; transcript_id "HARLEQUIN_12q13.12"; locus "HARLEQUIN_12q13.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0141"; repClass "LTR"; repEnd "1410"; repFamily "ERV1"; repLeft "-5486"; repStart "263"; chr12 rmsk exon 49735988 49739725 30047 + . gene_id "HARLEQUIN_12q13.12"; transcript_id "HARLEQUIN_12q13.12"; locus "HARLEQUIN_12q13.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0141"; repClass "LTR"; repEnd "5565"; repFamily "ERV1"; repLeft "-1331"; repStart "1799"; chr12 rmsk exon 49739707 49740127 2850 + . gene_id "HARLEQUIN_12q13.12"; transcript_id "HARLEQUIN_12q13.12"; locus "HARLEQUIN_12q13.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0141"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6477"; chr12 rmsk exon 49740128 49740561 3354 + . gene_id "HARLEQUIN_12q13.12"; transcript_id "HARLEQUIN_12q13.12"; locus "HARLEQUIN_12q13.12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0141"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_12q13.12 ### chr12 rmsk gene 50322493 50326044 . + . gene_id "HERVL_12q13.12"; transcript_id "HERVL_12q13.12"; locus "HERVL_12q13.12"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0966"; model_cov "2834"; model_pct "50.1"; chr12 rmsk exon 50322493 50323591 23190 + . gene_id "HERVL_12q13.12"; transcript_id "HERVL_12q13.12"; locus "HERVL_12q13.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0966"; repClass "LTR"; repEnd "3922"; repFamily "ERVL"; repLeft "-1732"; repStart "2819"; chr12 rmsk exon 50323881 50325602 23190 + . gene_id "HERVL_12q13.12"; transcript_id "HERVL_12q13.12"; locus "HERVL_12q13.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0966"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3923"; chr12 rmsk exon 50325603 50326044 3172 + . gene_id "HERVL_12q13.12"; transcript_id "HERVL_12q13.12"; locus "HERVL_12q13.12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0966"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_12q13.12b ### chr12 rmsk gene 50389553 50390784 . - . gene_id "ERVLB4_12q13.12b"; transcript_id "ERVLB4_12q13.12b"; locus "ERVLB4_12q13.12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1282"; model_cov "1386"; model_pct "24.3"; chr12 rmsk exon 50389553 50390784 6251 - . gene_id "ERVLB4_12q13.12b"; transcript_id "ERVLB4_12q13.12b"; locus "ERVLB4_12q13.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1282"; repClass "LTR"; repEnd "2646"; repFamily "ERVL"; repLeft "1260"; repStart "-3068"; ### HML3_12q13.12 ### chr12 rmsk gene 50491884 50498846 . - . gene_id "HML3_12q13.12"; transcript_id "HML3_12q13.12"; locus "HML3_12q13.12"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0173"; model_cov "6020"; model_pct "100.0"; chr12 rmsk exon 50491884 50492384 4490 - . gene_id "HML3_12q13.12"; transcript_id "HML3_12q13.12"; locus "HML3_12q13.12"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0173"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 50492385 50498326 50260 - . gene_id "HML3_12q13.12"; transcript_id "HML3_12q13.12"; locus "HML3_12q13.12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0173"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 50498327 50498846 4393 - . gene_id "HML3_12q13.12"; transcript_id "HML3_12q13.12"; locus "HML3_12q13.12"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0173"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_12q13.12 ### chr12 rmsk gene 50765551 50772153 . + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0394"; model_cov "5380"; model_pct "90.5"; chr12 rmsk exon 50765551 50766086 3969 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0394"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 50766089 50766509 4099 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "457"; repFamily "ERV1"; repLeft "-5489"; repStart "3"; chr12 rmsk exon 50766665 50767224 4099 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "1121"; repFamily "ERV1"; repLeft "-4825"; repStart "458"; chr12 rmsk exon 50767546 50767871 2502 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "1610"; repFamily "ERV1"; repLeft "-4336"; repStart "1286"; chr12 rmsk exon 50768173 50768321 2502 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "1611"; chr12 rmsk exon 50768309 50768463 771 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1866"; chr12 rmsk exon 50768440 50768507 330 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "-3726"; repStart "2167"; chr12 rmsk exon 50768487 50769222 4434 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "3425"; repFamily "ERV1"; repLeft "-2521"; repStart "2667"; chr12 rmsk exon 50769522 50770999 12800 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "5636"; repFamily "ERV1"; repLeft "-310"; repStart "3130"; chr12 rmsk exon 50771305 50771605 12800 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0394"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5637"; chr12 rmsk exon 50771606 50772153 4335 + . gene_id "MER41_12q13.12"; transcript_id "MER41_12q13.12"; locus "MER41_12q13.12"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0394"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_12q13.12 ### chr12 rmsk gene 50902476 50912387 . - . gene_id "HERVW_12q13.12"; transcript_id "HERVW_12q13.12"; locus "HERVW_12q13.12"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0232"; model_cov "8620"; model_pct "99.9"; chr12 rmsk exon 50902476 50903253 6266 - . gene_id "HERVW_12q13.12"; transcript_id "HERVW_12q13.12"; locus "HERVW_12q13.12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0232"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 50903257 50911052 65913 - . gene_id "HERVW_12q13.12"; transcript_id "HERVW_12q13.12"; locus "HERVW_12q13.12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0232"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "823"; repStart "-3"; chr12 rmsk exon 50911095 50911839 65913 - . gene_id "HERVW_12q13.12"; transcript_id "HERVW_12q13.12"; locus "HERVW_12q13.12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0232"; repClass "LTR"; repEnd "822"; repFamily "ERV1"; repLeft "2"; repStart "-7804"; chr12 rmsk exon 50911840 50912387 3947 - . gene_id "HERVW_12q13.12"; transcript_id "HERVW_12q13.12"; locus "HERVW_12q13.12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0232"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "242"; repStart "0"; ### MER61_12q13.12 ### chr12 rmsk gene 50914752 50921640 . + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; category "internal"; intModel "MER61-int"; locid "MER61-int_0277"; model_cov "4346"; model_pct "83.3"; chr12 rmsk exon 50914752 50914807 4155 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "-1905"; repFamily "ERV1"; repLeft "-7122"; repStart "-1968"; chr12 rmsk exon 50915106 50915147 4155 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "-1872"; repFamily "ERV1"; repLeft "-7089"; repStart "-1904"; chr12 rmsk exon 50915174 50916840 6987 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "-123"; repFamily "ERV1"; repLeft "-5340"; repStart "-1871"; chr12 rmsk exon 50917131 50917430 6987 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "179"; repFamily "ERV1"; repLeft "-5038"; repStart "-122"; chr12 rmsk exon 50917730 50918470 10644 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "867"; repFamily "ERV1"; repLeft "-4350"; repStart "609"; chr12 rmsk exon 50919159 50919670 10644 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "1330"; repFamily "ERV1"; repLeft "-3887"; repStart "868"; chr12 rmsk exon 50920263 50921640 10644 + . gene_id "MER61_12q13.12"; transcript_id "MER61_12q13.12"; locus "MER61_12q13.12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0277"; repClass "LTR"; repEnd "2813"; repFamily "ERV1"; repLeft "-2404"; repStart "1331"; ### ERVLE_12q13.12 ### chr12 rmsk gene 50963399 50968352 . - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_2715"; model_cov "2651"; model_pct "46.8"; chr12 rmsk exon 50963399 50963858 1367 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "2"; repStart "-191"; chr12 rmsk exon 50963860 50964480 2857 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5007"; repStart "0"; chr12 rmsk exon 50964505 50964903 6108 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "2267"; repStart "-3001"; chr12 rmsk exon 50965023 50965111 6108 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "2266"; repFamily "ERVL"; repLeft "2181"; repStart "-3401"; chr12 rmsk exon 50965423 50966377 6108 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1141"; repStart "-3487"; chr12 rmsk exon 50966602 50966672 774 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "1140"; repFamily "ERVL"; repLeft "1074"; repStart "-4527"; chr12 rmsk exon 50966673 50966870 842 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "669"; repFamily "ERVL"; repLeft "456"; repStart "-4998"; chr12 rmsk exon 50967578 50967770 674 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-43"; repStart "-5521"; chr12 rmsk exon 50967772 50967842 762 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "610"; repStart "0"; chr12 rmsk exon 50968147 50968352 762 - . gene_id "ERVLE_12q13.12"; transcript_id "ERVLE_12q13.12"; locus "ERVLE_12q13.12"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2715"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "372"; repStart "-54"; ### HML3_12q13.13 ### chr12 rmsk gene 51734197 51740272 . - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0174"; model_cov "5173"; model_pct "85.9"; chr12 rmsk exon 51734197 51734710 4609 - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0174"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "2"; repStart "0"; chr12 rmsk exon 51734712 51737718 18418 - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0174"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "2962"; repStart "0"; chr12 rmsk exon 51737720 51739164 11380 - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0174"; repClass "LTR"; repEnd "2791"; repFamily "ERVK"; repLeft "1280"; repStart "-3230"; chr12 rmsk exon 51739165 51739756 4523 - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0174"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr12 rmsk exon 51739761 51740272 4701 - . gene_id "HML3_12q13.13"; transcript_id "HML3_12q13.13"; locus "HML3_12q13.13"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0174"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "1"; repStart "-3"; ### HERVL_12q13.13 ### chr12 rmsk gene 51796550 51803499 . - . gene_id "HERVL_12q13.13"; transcript_id "HERVL_12q13.13"; locus "HERVL_12q13.13"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0967"; model_cov "5652"; model_pct "100.0"; chr12 rmsk exon 51796550 51797115 1614 - . gene_id "HERVL_12q13.13"; transcript_id "HERVL_12q13.13"; locus "HERVL_12q13.13"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0967"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 51797116 51801772 40888 - . gene_id "HERVL_12q13.13"; transcript_id "HERVL_12q13.13"; locus "HERVL_12q13.13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0967"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "957"; repStart "0"; chr12 rmsk exon 51802068 51802995 40888 - . gene_id "HERVL_12q13.13"; transcript_id "HERVL_12q13.13"; locus "HERVL_12q13.13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0967"; repClass "LTR"; repEnd "956"; repFamily "ERVL"; repLeft "1"; repStart "-4698"; chr12 rmsk exon 51802997 51803499 1642 - . gene_id "HERVL_12q13.13"; transcript_id "HERVL_12q13.13"; locus "HERVL_12q13.13"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0967"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "1"; repStart "-7"; ### HERVE_12q13.13 ### chr12 rmsk gene 52116007 52118404 . - . gene_id "HERVE_12q13.13"; transcript_id "HERVE_12q13.13"; locus "HERVE_12q13.13"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0125"; model_cov "2367"; model_pct "30.3"; chr12 rmsk exon 52116007 52118404 18216 - . gene_id "HERVE_12q13.13"; transcript_id "HERVE_12q13.13"; locus "HERVE_12q13.13"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0125"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "2798"; repStart "-2648"; ### ERV316A3_12q13.13 ### chr12 rmsk gene 52131842 52135265 . + . gene_id "ERV316A3_12q13.13"; transcript_id "ERV316A3_12q13.13"; locus "ERV316A3_12q13.13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2083"; model_cov "1788"; model_pct "34.2"; chr12 rmsk exon 52131842 52132755 1756 + . gene_id "ERV316A3_12q13.13"; transcript_id "ERV316A3_12q13.13"; locus "ERV316A3_12q13.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2083"; repClass "LTR"; repEnd "1874"; repFamily "ERVL"; repLeft "-3352"; repStart "951"; chr12 rmsk exon 52133463 52134104 2938 + . gene_id "ERV316A3_12q13.13"; transcript_id "ERV316A3_12q13.13"; locus "ERV316A3_12q13.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2083"; repClass "LTR"; repEnd "2497"; repFamily "ERVL"; repLeft "-2729"; repStart "1874"; chr12 rmsk exon 52134706 52134876 2938 + . gene_id "ERV316A3_12q13.13"; transcript_id "ERV316A3_12q13.13"; locus "ERV316A3_12q13.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2083"; repClass "LTR"; repEnd "2659"; repFamily "ERVL"; repLeft "-2567"; repStart "2498"; chr12 rmsk exon 52135176 52135265 2938 + . gene_id "ERV316A3_12q13.13"; transcript_id "ERV316A3_12q13.13"; locus "ERV316A3_12q13.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2083"; repClass "LTR"; repEnd "2741"; repFamily "ERVL"; repLeft "-2485"; repStart "2660"; ### PABLA_12q13.13 ### chr12 rmsk gene 53106564 53114152 . - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0113"; model_cov "4528"; model_pct "90.3"; chr12 rmsk exon 53106564 53107128 4184 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 53107130 53107622 21680 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "4518"; repStart "-1"; chr12 rmsk exon 53107923 53108956 21680 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "3461"; repStart "-498"; chr12 rmsk exon 53109257 53109469 21680 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "3460"; repFamily "ERV1"; repLeft "3251"; repStart "-1555"; chr12 rmsk exon 53109789 53111110 21680 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "3250"; repFamily "ERV1"; repLeft "1903"; repStart "-1765"; chr12 rmsk exon 53111484 53112007 4297 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "1675"; repFamily "ERV1"; repLeft "1151"; repStart "-3340"; chr12 rmsk exon 53112000 53112264 6545 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "642"; repStart "-4116"; chr12 rmsk exon 53112563 53112768 6545 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "460"; repStart "-4374"; chr12 rmsk exon 53113073 53113540 6545 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-4556"; chr12 rmsk exon 53113541 53114152 4837 - . gene_id "PABLA_12q13.13"; transcript_id "PABLA_12q13.13"; locus "PABLA_12q13.13"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0113"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12q13.13 ### chr12 rmsk gene 53642331 53648563 . + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1283"; model_cov "3085"; model_pct "54.0"; chr12 rmsk exon 53642331 53642829 3108 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "1400"; repFamily "ERVL"; repLeft "-4314"; repStart "873"; chr12 rmsk exon 53643397 53643561 1076 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "2726"; repFamily "ERVL"; repLeft "-2988"; repStart "2556"; chr12 rmsk exon 53643663 53643886 2113 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-2138"; repStart "3313"; chr12 rmsk exon 53644190 53644947 5057 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "4033"; repFamily "ERVL"; repLeft "-1681"; repStart "3276"; chr12 rmsk exon 53646870 53647662 8801 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "4802"; repFamily "ERVL"; repLeft "-912"; repStart "4026"; chr12 rmsk exon 53647957 53648563 8801 + . gene_id "ERVLB4_12q13.13"; transcript_id "ERVLB4_12q13.13"; locus "ERVLB4_12q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1283"; repClass "LTR"; repEnd "5395"; repFamily "ERVL"; repLeft "-319"; repStart "4803"; ### HERVL74_12q13.2 ### chr12 rmsk gene 54774623 54776746 . - . gene_id "HERVL74_12q13.2"; transcript_id "HERVL74_12q13.2"; locus "HERVL74_12q13.2"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0078"; model_cov "1566"; model_pct "27.5"; chr12 rmsk exon 54774623 54775108 2336 - . gene_id "HERVL74_12q13.2"; transcript_id "HERVL74_12q13.2"; locus "HERVL74_12q13.2"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0078"; repClass "LTR"; repEnd "527"; repFamily "ERVL"; repLeft "-63"; repStart "-31"; chr12 rmsk exon 54775138 54776302 3442 - . gene_id "HERVL74_12q13.2"; transcript_id "HERVL74_12q13.2"; locus "HERVL74_12q13.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0078"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "3921"; repStart "-589"; chr12 rmsk exon 54776358 54776746 1469 - . gene_id "HERVL74_12q13.2"; transcript_id "HERVL74_12q13.2"; locus "HERVL74_12q13.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0078"; repClass "LTR"; repEnd "3570"; repFamily "ERVL"; repLeft "3179"; repStart "-2115"; ### HERVH_12q13.2a ### chr12 rmsk gene 54930682 54932632 . - . gene_id "HERVH_12q13.2a"; transcript_id "HERVH_12q13.2a"; locus "HERVH_12q13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0938"; model_cov "1595"; model_pct "20.7"; chr12 rmsk exon 54930682 54930918 1298 - . gene_id "HERVH_12q13.2a"; transcript_id "HERVH_12q13.2a"; locus "HERVH_12q13.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0938"; repClass "LTR"; repEnd "332"; repFamily "ERV1"; repLeft "57"; repStart "-132"; chr12 rmsk exon 54930919 54932524 8252 - . gene_id "HERVH_12q13.2a"; transcript_id "HERVH_12q13.2a"; locus "HERVH_12q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0938"; repClass "LTR"; repEnd "7696"; repFamily "ERV1"; repLeft "6101"; repStart "-17"; chr12 rmsk exon 54932525 54932632 879 - . gene_id "HERVH_12q13.2a"; transcript_id "HERVH_12q13.2a"; locus "HERVH_12q13.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0938"; repClass "LTR"; repEnd "108"; repFamily "ERV1"; repLeft "1"; repStart "-356"; ### HERVH_12q13.2b ### chr12 rmsk gene 54942538 54948366 . - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0940"; model_cov "5279"; model_pct "68.4"; chr12 rmsk exon 54942538 54942927 2553 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 54942928 54943474 3421 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr12 rmsk exon 54943468 54943888 2546 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chr12 rmsk exon 54943880 54944072 1219 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4954"; repStart "-2564"; chr12 rmsk exon 54944172 54945051 6132 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "3866"; repFamily "ERV1"; repLeft "2972"; repStart "-3847"; chr12 rmsk exon 54945055 54945422 2179 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3357"; repStart "-3977"; chr12 rmsk exon 54945423 54947976 13258 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chr12 rmsk exon 54947977 54948366 2742 - . gene_id "HERVH_12q13.2b"; transcript_id "HERVH_12q13.2b"; locus "HERVH_12q13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0940"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_12q13.2a ### chr12 rmsk gene 55109631 55110435 . - . gene_id "MER61_12q13.2a"; transcript_id "MER61_12q13.2a"; locus "MER61_12q13.2a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0279"; model_cov "824"; model_pct "15.8"; chr12 rmsk exon 55109631 55110435 5390 - . gene_id "MER61_12q13.2a"; transcript_id "MER61_12q13.2a"; locus "MER61_12q13.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0279"; repClass "LTR"; repEnd "2819"; repFamily "ERV1"; repLeft "1995"; repStart "-2398"; ### MER61_12q13.2b ### chr12 rmsk gene 55172758 55174109 . + . gene_id "MER61_12q13.2b"; transcript_id "MER61_12q13.2b"; locus "MER61_12q13.2b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0281"; model_cov "732"; model_pct "14.0"; chr12 rmsk exon 55172758 55173160 2427 + . gene_id "MER61_12q13.2b"; transcript_id "MER61_12q13.2b"; locus "MER61_12q13.2b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0281"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "22"; chr12 rmsk exon 55173456 55173776 740 + . gene_id "MER61_12q13.2b"; transcript_id "MER61_12q13.2b"; locus "MER61_12q13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0281"; repClass "LTR"; repEnd "-1131"; repFamily "ERV1"; repLeft "-6348"; repStart "-1693"; chr12 rmsk exon 55173854 55174109 1052 + . gene_id "MER61_12q13.2b"; transcript_id "MER61_12q13.2b"; locus "MER61_12q13.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0281"; repClass "LTR"; repEnd "4162"; repFamily "ERV1"; repLeft "-1055"; repStart "3992"; ### ERVLE_12q13.2a ### chr12 rmsk gene 55253167 55254331 . - . gene_id "ERVLE_12q13.2a"; transcript_id "ERVLE_12q13.2a"; locus "ERVLE_12q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2720"; model_cov "868"; model_pct "15.3"; chr12 rmsk exon 55253167 55253493 840 - . gene_id "ERVLE_12q13.2a"; transcript_id "ERVLE_12q13.2a"; locus "ERVLE_12q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2720"; repClass "LTR"; repEnd "2475"; repFamily "ERVL"; repLeft "2148"; repStart "-3192"; chr12 rmsk exon 55253813 55254331 895 - . gene_id "ERVLE_12q13.2a"; transcript_id "ERVLE_12q13.2a"; locus "ERVLE_12q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2720"; repClass "LTR"; repEnd "1726"; repFamily "ERVL"; repLeft "1185"; repStart "-3941"; ### HERVL40_12q13.2 ### chr12 rmsk gene 55257492 55258323 . + . gene_id "HERVL40_12q13.2"; transcript_id "HERVL40_12q13.2"; locus "HERVL40_12q13.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0324"; model_cov "667"; model_pct "12.1"; chr12 rmsk exon 55257492 55257635 566 + . gene_id "HERVL40_12q13.2"; transcript_id "HERVL40_12q13.2"; locus "HERVL40_12q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0324"; repClass "LTR"; repEnd "3669"; repFamily "ERVL"; repLeft "-1861"; repStart "3526"; chr12 rmsk exon 55257801 55258091 949 + . gene_id "HERVL40_12q13.2"; transcript_id "HERVL40_12q13.2"; locus "HERVL40_12q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0324"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1240"; repStart "3988"; chr12 rmsk exon 55258103 55258323 468 + . gene_id "HERVL40_12q13.2"; transcript_id "HERVL40_12q13.2"; locus "HERVL40_12q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0324"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-870"; repStart "4438"; ### ERVLE_12q13.2b ### chr12 rmsk gene 55511647 55513904 . - . gene_id "ERVLE_12q13.2b"; transcript_id "ERVLE_12q13.2b"; locus "ERVLE_12q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2722"; model_cov "2387"; model_pct "42.1"; chr12 rmsk exon 55511647 55513557 3261 - . gene_id "ERVLE_12q13.2b"; transcript_id "ERVLE_12q13.2b"; locus "ERVLE_12q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2722"; repClass "LTR"; repEnd "4081"; repFamily "ERVL"; repLeft "2070"; repStart "-1586"; chr12 rmsk exon 55513542 55513904 1335 - . gene_id "ERVLE_12q13.2b"; transcript_id "ERVLE_12q13.2b"; locus "ERVLE_12q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2722"; repClass "LTR"; repEnd "1870"; repFamily "ERVL"; repLeft "1494"; repStart "-3797"; ### ERVLE_12q13.2c ### chr12 rmsk gene 55527162 55527868 . + . gene_id "ERVLE_12q13.2c"; transcript_id "ERVLE_12q13.2c"; locus "ERVLE_12q13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2723"; model_cov "847"; model_pct "14.9"; chr12 rmsk exon 55527162 55527868 2308 + . gene_id "ERVLE_12q13.2c"; transcript_id "ERVLE_12q13.2c"; locus "ERVLE_12q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2723"; repClass "LTR"; repEnd "5100"; repFamily "ERVL"; repLeft "-567"; repStart "4253"; ### ERVLE_12q13.2d ### chr12 rmsk gene 55584592 55585263 . + . gene_id "ERVLE_12q13.2d"; transcript_id "ERVLE_12q13.2d"; locus "ERVLE_12q13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2724"; model_cov "673"; model_pct "11.9"; chr12 rmsk exon 55584592 55585263 927 + . gene_id "ERVLE_12q13.2d"; transcript_id "ERVLE_12q13.2d"; locus "ERVLE_12q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2724"; repClass "LTR"; repEnd "4425"; repFamily "ERVL"; repLeft "-1242"; repStart "3752"; ### ERVLB4_12q13.2a ### chr12 rmsk gene 55624432 55628496 . - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1285"; model_cov "2002"; model_pct "35.0"; chr12 rmsk exon 55624432 55624620 448 - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1285"; repClass "LTR"; repEnd "5045"; repFamily "ERVL"; repLeft "4855"; repStart "-669"; chr12 rmsk exon 55625504 55626113 3803 - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1285"; repClass "LTR"; repEnd "4858"; repFamily "ERVL"; repLeft "4271"; repStart "-856"; chr12 rmsk exon 55626697 55627016 3803 - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1285"; repClass "LTR"; repEnd "4270"; repFamily "ERVL"; repLeft "3932"; repStart "-1444"; chr12 rmsk exon 55627276 55627938 3803 - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1285"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "3312"; repStart "-1783"; chr12 rmsk exon 55628222 55628496 3803 - . gene_id "ERVLB4_12q13.2a"; transcript_id "ERVLB4_12q13.2a"; locus "ERVLB4_12q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1285"; repClass "LTR"; repEnd "3311"; repFamily "ERVL"; repLeft "3043"; repStart "-2403"; ### ERVLB4_12q13.2b ### chr12 rmsk gene 55642877 55643624 . + . gene_id "ERVLB4_12q13.2b"; transcript_id "ERVLB4_12q13.2b"; locus "ERVLB4_12q13.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1286"; model_cov "572"; model_pct "10.0"; chr12 rmsk exon 55642877 55643149 480 + . gene_id "ERVLB4_12q13.2b"; transcript_id "ERVLB4_12q13.2b"; locus "ERVLB4_12q13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1286"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "-2938"; repStart "2500"; chr12 rmsk exon 55643366 55643624 483 + . gene_id "ERVLB4_12q13.2b"; transcript_id "ERVLB4_12q13.2b"; locus "ERVLB4_12q13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1286"; repClass "LTR"; repEnd "3362"; repFamily "ERVL"; repLeft "-2352"; repStart "3066"; ### MER61_12q13.3 ### chr12 rmsk gene 56398017 56398510 . - . gene_id "MER61_12q13.3"; transcript_id "MER61_12q13.3"; locus "MER61_12q13.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0282"; model_cov "538"; model_pct "10.3"; chr12 rmsk exon 56398017 56398510 1653 - . gene_id "MER61_12q13.3"; transcript_id "MER61_12q13.3"; locus "MER61_12q13.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0282"; repClass "LTR"; repEnd "3002"; repFamily "ERV1"; repLeft "2464"; repStart "-2215"; ### HERVL_12q13.3 ### chr12 rmsk gene 56398527 56405145 . + . gene_id "HERVL_12q13.3"; transcript_id "HERVL_12q13.3"; locus "HERVL_12q13.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0968"; model_cov "5496"; model_pct "97.2"; chr12 rmsk exon 56398527 56400360 28923 + . gene_id "HERVL_12q13.3"; transcript_id "HERVL_12q13.3"; locus "HERVL_12q13.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0968"; repClass "LTR"; repEnd "2118"; repFamily "ERVL"; repLeft "-3536"; repStart "303"; chr12 rmsk exon 56401326 56404751 28923 + . gene_id "HERVL_12q13.3"; transcript_id "HERVL_12q13.3"; locus "HERVL_12q13.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0968"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1973"; chr12 rmsk exon 56404752 56405145 2908 + . gene_id "HERVL_12q13.3"; transcript_id "HERVL_12q13.3"; locus "HERVL_12q13.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0968"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### LTR19_12q13.3 ### chr12 rmsk gene 56405357 56406961 . - . gene_id "LTR19_12q13.3"; transcript_id "LTR19_12q13.3"; locus "LTR19_12q13.3"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0036"; model_cov "1982"; model_pct "35.5"; chr12 rmsk exon 56405357 56406460 2726 - . gene_id "LTR19_12q13.3"; transcript_id "LTR19_12q13.3"; locus "LTR19_12q13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0036"; repClass "LTR"; repEnd "1703"; repFamily "ERV1"; repLeft "-85"; repStart "-3883"; chr12 rmsk exon 56406757 56406804 2044 - . gene_id "LTR19_12q13.3"; transcript_id "LTR19_12q13.3"; locus "LTR19_12q13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0036"; repClass "LTR"; repEnd "1365"; repFamily "ERV1"; repLeft "1319"; repStart "-4221"; chr12 rmsk exon 56406815 56406961 756 - . gene_id "LTR19_12q13.3"; transcript_id "LTR19_12q13.3"; locus "LTR19_12q13.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0036"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "630"; repStart "-4808"; ### HML4_12q13.3 ### chr12 rmsk gene 56497590 56501724 . - . gene_id "HML4_12q13.3"; transcript_id "HML4_12q13.3"; locus "HML4_12q13.3"; category "oneside"; intModel "HERVK13-int"; locid "HERVK13-int_0015"; model_cov "2266"; model_pct "27.9"; chr12 rmsk exon 56497590 56499117 5868 - . gene_id "HML4_12q13.3"; transcript_id "HML4_12q13.3"; locus "HML4_12q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0015"; repClass "LTR"; repEnd "2447"; repFamily "ERVK"; repLeft "963"; repStart "-5669"; chr12 rmsk exon 56499816 56499877 276 - . gene_id "HML4_12q13.3"; transcript_id "HML4_12q13.3"; locus "HML4_12q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0015"; repClass "LTR"; repEnd "832"; repFamily "ERVK"; repLeft "762"; repStart "-7284"; chr12 rmsk exon 56500001 56500706 3175 - . gene_id "HML4_12q13.3"; transcript_id "HML4_12q13.3"; locus "HML4_12q13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0015"; repClass "LTR"; repEnd "713"; repFamily "ERVK"; repLeft "1"; repStart "-7403"; chr12 rmsk exon 56500707 56501724 7787 - . gene_id "HML4_12q13.3"; transcript_id "HML4_12q13.3"; locus "HML4_12q13.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0015"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVFRD_12q13.3 ### chr12 rmsk gene 56830706 56837966 . - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0134"; model_cov "4332"; model_pct "60.1"; chr12 rmsk exon 56830706 56831380 4118 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0134"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "4"; repStart "-23"; chr12 rmsk exon 56831381 56831698 2524 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0134"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6881"; repStart "-8"; chr12 rmsk exon 56833052 56834575 16655 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0134"; repClass "LTR"; repEnd "4966"; repFamily "ERV1"; repLeft "3458"; repStart "-2239"; chr12 rmsk exon 56834790 56835481 16655 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0134"; repClass "LTR"; repEnd "3457"; repFamily "ERV1"; repLeft "2791"; repStart "-3748"; chr12 rmsk exon 56835485 56837237 7037 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0134"; repClass "LTR"; repEnd "1843"; repFamily "ERV1"; repLeft "1"; repStart "-5362"; chr12 rmsk exon 56837279 56837966 4015 - . gene_id "HERVFRD_12q13.3"; transcript_id "HERVFRD_12q13.3"; locus "HERVFRD_12q13.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0134"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### MER101_12q13.3 ### chr12 rmsk gene 56865446 56871454 . - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0282"; model_cov "3888"; model_pct "58.6"; chr12 rmsk exon 56865446 56865530 483 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101B"; geneRegion "ltr"; locid "MER101-int_0282"; repClass "LTR"; repEnd "95"; repFamily "ERV1"; repLeft "1"; repStart "-475"; chr12 rmsk exon 56865774 56866457 3845 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "4597"; repFamily "ERV1"; repLeft "3910"; repStart "-2042"; chr12 rmsk exon 56866452 56866601 677 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "3758"; repFamily "ERV1"; repLeft "3617"; repStart "-2881"; chr12 rmsk exon 56866587 56866984 2551 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "3515"; repFamily "ERV1"; repLeft "3122"; repStart "-3124"; chr12 rmsk exon 56866988 56867714 8706 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "2859"; repFamily "ERV1"; repLeft "2130"; repStart "-3780"; chr12 rmsk exon 56868006 56868723 8706 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "2129"; repFamily "ERV1"; repLeft "1451"; repStart "-4510"; chr12 rmsk exon 56869019 56869714 4060 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "1456"; repFamily "ERV1"; repLeft "819"; repStart "-5183"; chr12 rmsk exon 56870048 56870109 4060 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "818"; repFamily "ERV1"; repLeft "758"; repStart "-5821"; chr12 rmsk exon 56870770 56871088 1910 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "424"; repStart "-5892"; chr12 rmsk exon 56871211 56871454 1031 - . gene_id "MER101_12q13.3"; transcript_id "MER101_12q13.3"; locus "MER101_12q13.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0282"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "1"; repStart "-6398"; ### HERVW_12q13.3 ### chr12 rmsk gene 56967072 56968594 . - . gene_id "HERVW_12q13.3"; transcript_id "HERVW_12q13.3"; locus "HERVW_12q13.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0233"; model_cov "1527"; model_pct "17.7"; chr12 rmsk exon 56967072 56968594 12581 - . gene_id "HERVW_12q13.3"; transcript_id "HERVW_12q13.3"; locus "HERVW_12q13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0233"; repClass "LTR"; repEnd "3294"; repFamily "ERV1"; repLeft "1767"; repStart "-5332"; ### MER4_12q13.3a ### chr12 rmsk gene 57640676 57646460 . + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0586"; model_cov "2431"; model_pct "36.8"; chr12 rmsk exon 57640676 57641126 3212 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0586"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 57641130 57642064 4202 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "1033"; repFamily "ERV1"; repLeft "-5565"; repStart "1"; chr12 rmsk exon 57643632 57643651 4202 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "-5546"; repStart "1034"; chr12 rmsk exon 57643944 57644083 4202 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "1180"; repFamily "ERV1"; repLeft "-5418"; repStart "1053"; chr12 rmsk exon 57644388 57645035 3873 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1831"; chr12 rmsk exon 57645283 57645336 2556 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "2790"; repFamily "ERV1"; repLeft "-3808"; repStart "2737"; chr12 rmsk exon 57645652 57646121 2556 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "3291"; repFamily "ERV1"; repLeft "-3307"; repStart "2791"; chr12 rmsk exon 57646421 57646460 2556 + . gene_id "MER4_12q13.3a"; transcript_id "MER4_12q13.3a"; locus "MER4_12q13.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0586"; repClass "LTR"; repEnd "3329"; repFamily "ERV1"; repLeft "-3269"; repStart "3292"; ### MER4_12q13.3b ### chr12 rmsk gene 57652500 57657341 . + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0587"; model_cov "2663"; model_pct "40.4"; chr12 rmsk exon 57652500 57653263 15730 + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0587"; repClass "LTR"; repEnd "4719"; repFamily "ERV1"; repLeft "-1879"; repStart "3932"; chr12 rmsk exon 57653558 57654854 15730 + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0587"; repClass "LTR"; repEnd "6051"; repFamily "ERV1"; repLeft "-547"; repStart "4720"; chr12 rmsk exon 57655165 57655594 15730 + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0587"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "-124"; repStart "6052"; chr12 rmsk exon 57657133 57657264 15730 + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0587"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "6475"; chr12 rmsk exon 57657267 57657341 449 + . gene_id "MER4_12q13.3b"; transcript_id "MER4_12q13.3b"; locus "MER4_12q13.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0587"; repClass "LTR"; repEnd "77"; repFamily "ERV1"; repLeft "-395"; repStart "2"; ### ERVLE_12q14.1a ### chr12 rmsk gene 58066160 58068559 . + . gene_id "ERVLE_12q14.1a"; transcript_id "ERVLE_12q14.1a"; locus "ERVLE_12q14.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2726"; model_cov "1714"; model_pct "30.2"; chr12 rmsk exon 58066160 58066581 1119 + . gene_id "ERVLE_12q14.1a"; transcript_id "ERVLE_12q14.1a"; locus "ERVLE_12q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2726"; repClass "LTR"; repEnd "3594"; repFamily "ERVL"; repLeft "-2073"; repStart "3101"; chr12 rmsk exon 58066887 58068087 5187 + . gene_id "ERVLE_12q14.1a"; transcript_id "ERVLE_12q14.1a"; locus "ERVLE_12q14.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2726"; repClass "LTR"; repEnd "4739"; repFamily "ERVL"; repLeft "-928"; repStart "3518"; chr12 rmsk exon 58068114 58068559 1027 + . gene_id "ERVLE_12q14.1a"; transcript_id "ERVLE_12q14.1a"; locus "ERVLE_12q14.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2726"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "180"; ### ERVL_12q14.1a ### chr12 rmsk gene 58150279 58152949 . - . gene_id "ERVL_12q14.1a"; transcript_id "ERVL_12q14.1a"; locus "ERVL_12q14.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0323"; model_cov "2251"; model_pct "39.1"; chr12 rmsk exon 58150279 58150736 1673 - . gene_id "ERVL_12q14.1a"; transcript_id "ERVL_12q14.1a"; locus "ERVL_12q14.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0323"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-24"; repStart "0"; chr12 rmsk exon 58150739 58151114 1490 - . gene_id "ERVL_12q14.1a"; transcript_id "ERVL_12q14.1a"; locus "ERVL_12q14.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0323"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5404"; repStart "0"; chr12 rmsk exon 58151118 58151247 603 - . gene_id "ERVL_12q14.1a"; transcript_id "ERVL_12q14.1a"; locus "ERVL_12q14.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0323"; repClass "LTR"; repEnd "5509"; repFamily "ERVL"; repLeft "5363"; repStart "-248"; chr12 rmsk exon 58151251 58152949 21048 - . gene_id "ERVL_12q14.1a"; transcript_id "ERVL_12q14.1a"; locus "ERVL_12q14.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0323"; repClass "LTR"; repEnd "4215"; repFamily "ERVL"; repLeft "2463"; repStart "-1542"; ### ERVL_12q14.1b ### chr12 rmsk gene 58153040 58156523 . - . gene_id "ERVL_12q14.1b"; transcript_id "ERVL_12q14.1b"; locus "ERVL_12q14.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0324"; model_cov "2455"; model_pct "42.6"; chr12 rmsk exon 58153040 58154376 21048 - . gene_id "ERVL_12q14.1b"; transcript_id "ERVL_12q14.1b"; locus "ERVL_12q14.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0324"; repClass "LTR"; repEnd "4215"; repFamily "ERVL"; repLeft "2834"; repStart "-1542"; chr12 rmsk exon 58154861 58155957 21048 - . gene_id "ERVL_12q14.1b"; transcript_id "ERVL_12q14.1b"; locus "ERVL_12q14.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0324"; repClass "LTR"; repEnd "1080"; repFamily "ERVL"; repLeft "6"; repStart "-4677"; chr12 rmsk exon 58155963 58156523 2671 - . gene_id "ERVL_12q14.1b"; transcript_id "ERVL_12q14.1b"; locus "ERVL_12q14.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0324"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML2_12q14.1 ### chr12 rmsk gene 58327459 58336915 . - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0094"; model_cov "7440"; model_pct "98.7"; chr12 rmsk exon 58327459 58328426 8871 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 58328522 58335947 49293 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr12 rmsk exon 58335948 58336915 8873 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_12q14.1 ### chr12 rmsk gene 58412387 58414002 . - . gene_id "MER41_12q14.1"; transcript_id "MER41_12q14.1"; locus "MER41_12q14.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0398"; model_cov "1090"; model_pct "18.3"; chr12 rmsk exon 58412387 58412924 3467 - . gene_id "MER41_12q14.1"; transcript_id "MER41_12q14.1"; locus "MER41_12q14.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0398"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr12 rmsk exon 58412925 58414002 7102 - . gene_id "MER41_12q14.1"; transcript_id "MER41_12q14.1"; locus "MER41_12q14.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0398"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4856"; repStart "0"; ### ERV316A3_12q14.1a ### chr12 rmsk gene 58555574 58556952 . - . gene_id "ERV316A3_12q14.1a"; transcript_id "ERV316A3_12q14.1a"; locus "ERV316A3_12q14.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2085"; model_cov "970"; model_pct "18.6"; chr12 rmsk exon 58555574 58555936 852 - . gene_id "ERV316A3_12q14.1a"; transcript_id "ERV316A3_12q14.1a"; locus "ERV316A3_12q14.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2085"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "1"; repStart "-32"; chr12 rmsk exon 58556031 58556952 1771 - . gene_id "ERV316A3_12q14.1a"; transcript_id "ERV316A3_12q14.1a"; locus "ERV316A3_12q14.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2085"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "4163"; repStart "-93"; ### HERVW_12q14.1 ### chr12 rmsk gene 58851865 58859752 . - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0234"; model_cov "6342"; model_pct "73.5"; chr12 rmsk exon 58851865 58852623 6035 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 58852628 58852915 2174 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8335"; repStart "-4"; chr12 rmsk exon 58852906 58852944 268 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr12 rmsk exon 58852938 58858140 41173 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "704"; repStart "-2607"; chr12 rmsk exon 58858335 58858993 3705 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "1"; repStart "-7923"; chr12 rmsk exon 58858994 58859752 6068 - . gene_id "HERVW_12q14.1"; transcript_id "HERVW_12q14.1"; locus "HERVW_12q14.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0234"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_12q14.1a ### chr12 rmsk gene 59101644 59107080 . + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0941"; model_cov "4902"; model_pct "63.6"; chr12 rmsk exon 59101644 59102077 2695 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 59102078 59105250 17318 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 59105232 59105377 902 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3142"; chr12 rmsk exon 59105368 59105865 3385 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chr12 rmsk exon 59105869 59106499 2810 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 59106497 59106717 1265 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr12 rmsk exon 59106716 59107080 2262 + . gene_id "HERVH_12q14.1a"; transcript_id "HERVH_12q14.1a"; locus "HERVH_12q14.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0941"; repClass "LTR"; repEnd "7699"; repFamily "ERV1"; repLeft "-14"; repStart "7322"; ### HERVH_12q14.1b ### chr12 rmsk gene 59323188 59328986 . - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0942"; model_cov "4913"; model_pct "63.7"; chr12 rmsk exon 59323188 59323669 3161 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 59323670 59324042 2411 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 59324041 59324258 1338 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 59324260 59324916 4208 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 59324919 59325420 3290 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 59325411 59325554 875 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 59325541 59328502 20258 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr12 rmsk exon 59328505 59328986 3201 - . gene_id "HERVH_12q14.1b"; transcript_id "HERVH_12q14.1b"; locus "HERVH_12q14.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0942"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_12q14.1 ### chr12 rmsk gene 59407773 59409011 . - . gene_id "HERVL40_12q14.1"; transcript_id "HERVL40_12q14.1"; locus "HERVL40_12q14.1"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0325"; model_cov "1049"; model_pct "19.0"; chr12 rmsk exon 59407773 59407921 511 - . gene_id "HERVL40_12q14.1"; transcript_id "HERVL40_12q14.1"; locus "HERVL40_12q14.1"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0325"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "260"; repStart "-26"; chr12 rmsk exon 59407943 59408333 1456 - . gene_id "HERVL40_12q14.1"; transcript_id "HERVL40_12q14.1"; locus "HERVL40_12q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0325"; repClass "LTR"; repEnd "4306"; repFamily "ERVL"; repLeft "3901"; repStart "-1224"; chr12 rmsk exon 59408365 59408739 1569 - . gene_id "HERVL40_12q14.1"; transcript_id "HERVL40_12q14.1"; locus "HERVL40_12q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0325"; repClass "LTR"; repEnd "3621"; repFamily "ERVL"; repLeft "3234"; repStart "-1909"; chr12 rmsk exon 59408766 59409011 521 - . gene_id "HERVL40_12q14.1"; transcript_id "HERVL40_12q14.1"; locus "HERVL40_12q14.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0325"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "2896"; repStart "-2377"; ### HERV9_12q14.1 ### chr12 rmsk gene 59470933 59476217 . + . gene_id "HERV9_12q14.1"; transcript_id "HERV9_12q14.1"; locus "HERV9_12q14.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0140"; model_cov "3588"; model_pct "42.5"; chr12 rmsk exon 59470933 59471493 3705 + . gene_id "HERV9_12q14.1"; transcript_id "HERV9_12q14.1"; locus "HERV9_12q14.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0140"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr12 rmsk exon 59471494 59474278 14274 + . gene_id "HERV9_12q14.1"; transcript_id "HERV9_12q14.1"; locus "HERV9_12q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0140"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "-5456"; repStart "1"; chr12 rmsk exon 59474757 59475364 4873 + . gene_id "HERV9_12q14.1"; transcript_id "HERV9_12q14.1"; locus "HERV9_12q14.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0140"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7827"; chr12 rmsk exon 59475365 59476217 5605 + . gene_id "HERV9_12q14.1"; transcript_id "HERV9_12q14.1"; locus "HERV9_12q14.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0140"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_12q14.1a ### chr12 rmsk gene 59518222 59519989 . - . gene_id "HERVL_12q14.1a"; transcript_id "HERVL_12q14.1a"; locus "HERVL_12q14.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0971"; model_cov "1133"; model_pct "20.0"; chr12 rmsk exon 59518222 59518300 407 - . gene_id "HERVL_12q14.1a"; transcript_id "HERVL_12q14.1a"; locus "HERVL_12q14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0971"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "372"; repStart "0"; chr12 rmsk exon 59518387 59519507 8691 - . gene_id "HERVL_12q14.1a"; transcript_id "HERVL_12q14.1a"; locus "HERVL_12q14.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0971"; repClass "LTR"; repEnd "1134"; repFamily "ERVL"; repLeft "1"; repStart "-4520"; chr12 rmsk exon 59519508 59519552 2955 - . gene_id "HERVL_12q14.1a"; transcript_id "HERVL_12q14.1a"; locus "HERVL_12q14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0971"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr12 rmsk exon 59519617 59519989 2955 - . gene_id "HERVL_12q14.1a"; transcript_id "HERVL_12q14.1a"; locus "HERVL_12q14.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0971"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "1"; repStart "-48"; ### HERVL_12q14.1b ### chr12 rmsk gene 59569475 59573542 . - . gene_id "HERVL_12q14.1b"; transcript_id "HERVL_12q14.1b"; locus "HERVL_12q14.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0972"; model_cov "2628"; model_pct "46.5"; chr12 rmsk exon 59569475 59569921 3276 - . gene_id "HERVL_12q14.1b"; transcript_id "HERVL_12q14.1b"; locus "HERVL_12q14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0972"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr12 rmsk exon 59569922 59572535 20609 - . gene_id "HERVL_12q14.1b"; transcript_id "HERVL_12q14.1b"; locus "HERVL_12q14.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0972"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3026"; repStart "0"; chr12 rmsk exon 59573138 59573542 2917 - . gene_id "HERVL_12q14.1b"; transcript_id "HERVL_12q14.1b"; locus "HERVL_12q14.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0972"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; ### ERV316A3_12q14.1b ### chr12 rmsk gene 59584092 59586722 . - . gene_id "ERV316A3_12q14.1b"; transcript_id "ERV316A3_12q14.1b"; locus "ERV316A3_12q14.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2086"; model_cov "2233"; model_pct "42.7"; chr12 rmsk exon 59584092 59585469 3724 - . gene_id "ERV316A3_12q14.1b"; transcript_id "ERV316A3_12q14.1b"; locus "ERV316A3_12q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2086"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "3155"; repStart "-751"; chr12 rmsk exon 59585639 59585691 282 - . gene_id "ERV316A3_12q14.1b"; transcript_id "ERV316A3_12q14.1b"; locus "ERV316A3_12q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2086"; repClass "LTR"; repEnd "3678"; repFamily "ERVL"; repLeft "3625"; repStart "-1548"; chr12 rmsk exon 59585865 59586722 2565 - . gene_id "ERV316A3_12q14.1b"; transcript_id "ERV316A3_12q14.1b"; locus "ERV316A3_12q14.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2086"; repClass "LTR"; repEnd "3004"; repFamily "ERVL"; repLeft "2144"; repStart "-2222"; ### ERVLE_12q14.1b ### chr12 rmsk gene 59820887 59821589 . + . gene_id "ERVLE_12q14.1b"; transcript_id "ERVLE_12q14.1b"; locus "ERVLE_12q14.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2728"; model_cov "870"; model_pct "15.4"; chr12 rmsk exon 59820887 59821589 1166 + . gene_id "ERVLE_12q14.1b"; transcript_id "ERVLE_12q14.1b"; locus "ERVLE_12q14.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2728"; repClass "LTR"; repEnd "5154"; repFamily "ERVL"; repLeft "-513"; repStart "4284"; ### ERVLE_12q14.1c ### chr12 rmsk gene 59902666 59904788 . + . gene_id "ERVLE_12q14.1c"; transcript_id "ERVLE_12q14.1c"; locus "ERVLE_12q14.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2729"; model_cov "1666"; model_pct "29.4"; chr12 rmsk exon 59902666 59903266 665 + . gene_id "ERVLE_12q14.1c"; transcript_id "ERVLE_12q14.1c"; locus "ERVLE_12q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2729"; repClass "LTR"; repEnd "2151"; repFamily "ERVL"; repLeft "-3516"; repStart "1553"; chr12 rmsk exon 59903345 59903682 552 + . gene_id "ERVLE_12q14.1c"; transcript_id "ERVLE_12q14.1c"; locus "ERVLE_12q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2729"; repClass "LTR"; repEnd "2237"; repFamily "ERVL"; repLeft "-3430"; repStart "1893"; chr12 rmsk exon 59903752 59904299 980 + . gene_id "ERVLE_12q14.1c"; transcript_id "ERVLE_12q14.1c"; locus "ERVLE_12q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2729"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2732"; repStart "2356"; chr12 rmsk exon 59904650 59904788 413 + . gene_id "ERVLE_12q14.1c"; transcript_id "ERVLE_12q14.1c"; locus "ERVLE_12q14.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2729"; repClass "LTR"; repEnd "5016"; repFamily "ERVL"; repLeft "-651"; repStart "4871"; ### ERVLB4_12q14.1a ### chr12 rmsk gene 59982520 59983125 . + . gene_id "ERVLB4_12q14.1a"; transcript_id "ERVLB4_12q14.1a"; locus "ERVLB4_12q14.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1287"; model_cov "706"; model_pct "12.4"; chr12 rmsk exon 59982520 59983125 652 + . gene_id "ERVLB4_12q14.1a"; transcript_id "ERVLB4_12q14.1a"; locus "ERVLB4_12q14.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1287"; repClass "LTR"; repEnd "4869"; repFamily "ERVL"; repLeft "-845"; repStart "4163"; ### HERVFRD_12q14.1 ### chr12 rmsk gene 60295062 60301961 . + . gene_id "HERVFRD_12q14.1"; transcript_id "HERVFRD_12q14.1"; locus "HERVFRD_12q14.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0135"; model_cov "6526"; model_pct "90.6"; chr12 rmsk exon 60295062 60298813 17409 + . gene_id "HERVFRD_12q14.1"; transcript_id "HERVFRD_12q14.1"; locus "HERVFRD_12q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0135"; repClass "LTR"; repEnd "4508"; repFamily "ERV1"; repLeft "-2697"; repStart "670"; chr12 rmsk exon 60299238 60301254 17409 + . gene_id "HERVFRD_12q14.1"; transcript_id "HERVFRD_12q14.1"; locus "HERVFRD_12q14.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0135"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "4509"; chr12 rmsk exon 60301255 60301961 3921 + . gene_id "HERVFRD_12q14.1"; transcript_id "HERVFRD_12q14.1"; locus "HERVFRD_12q14.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0135"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### MER61_12q14.1a ### chr12 rmsk gene 60387288 60391284 . - . gene_id "MER61_12q14.1a"; transcript_id "MER61_12q14.1a"; locus "MER61_12q14.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0283"; model_cov "3472"; model_pct "66.6"; chr12 rmsk exon 60387288 60387617 1670 - . gene_id "MER61_12q14.1a"; transcript_id "MER61_12q14.1a"; locus "MER61_12q14.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0283"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 60387618 60387679 1833 - . gene_id "MER61_12q14.1a"; transcript_id "MER61_12q14.1a"; locus "MER61_12q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0283"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5156"; repStart "0"; chr12 rmsk exon 60387970 60391284 20167 - . gene_id "MER61_12q14.1a"; transcript_id "MER61_12q14.1a"; locus "MER61_12q14.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0283"; repClass "LTR"; repEnd "5155"; repFamily "ERV1"; repLeft "1744"; repStart "-62"; ### HERVL_12q14.1c ### chr12 rmsk gene 60636517 60638792 . + . gene_id "HERVL_12q14.1c"; transcript_id "HERVL_12q14.1c"; locus "HERVL_12q14.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0974"; model_cov "1425"; model_pct "25.2"; chr12 rmsk exon 60636517 60636977 2457 + . gene_id "HERVL_12q14.1c"; transcript_id "HERVL_12q14.1c"; locus "HERVL_12q14.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0974"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 60636978 60637442 3542 + . gene_id "HERVL_12q14.1c"; transcript_id "HERVL_12q14.1c"; locus "HERVL_12q14.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0974"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-5190"; repStart "1"; chr12 rmsk exon 60637437 60638385 6541 + . gene_id "HERVL_12q14.1c"; transcript_id "HERVL_12q14.1c"; locus "HERVL_12q14.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0974"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4692"; chr12 rmsk exon 60638388 60638792 2957 + . gene_id "HERVL_12q14.1c"; transcript_id "HERVL_12q14.1c"; locus "HERVL_12q14.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0974"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "3"; ### HUERSP3_12q14.1a ### chr12 rmsk gene 60643108 60649627 . - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0154"; model_cov "6383"; model_pct "71.6"; chr12 rmsk exon 60643108 60643739 3831 - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0154"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 60643740 60643982 1363 - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0154"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8679"; repStart "0"; chr12 rmsk exon 60644460 60648616 16165 - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0154"; repClass "LTR"; repEnd "6991"; repFamily "ERV1"; repLeft "1235"; repStart "-1928"; chr12 rmsk exon 60648618 60649003 1808 - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0154"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "1"; repStart "-8531"; chr12 rmsk exon 60649004 60649627 3562 - . gene_id "HUERSP3_12q14.1a"; transcript_id "HUERSP3_12q14.1a"; locus "HUERSP3_12q14.1a"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0154"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_12q14.1c ### chr12 rmsk gene 60798354 60801847 . - . gene_id "ERV316A3_12q14.1c"; transcript_id "ERV316A3_12q14.1c"; locus "ERV316A3_12q14.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2087"; model_cov "2073"; model_pct "39.7"; chr12 rmsk exon 60798354 60798801 1503 - . gene_id "ERV316A3_12q14.1c"; transcript_id "ERV316A3_12q14.1c"; locus "ERV316A3_12q14.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2087"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr12 rmsk exon 60799120 60800248 3649 - . gene_id "ERV316A3_12q14.1c"; transcript_id "ERV316A3_12q14.1c"; locus "ERV316A3_12q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2087"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "3439"; repStart "-618"; chr12 rmsk exon 60800561 60801211 3649 - . gene_id "ERV316A3_12q14.1c"; transcript_id "ERV316A3_12q14.1c"; locus "ERV316A3_12q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2087"; repClass "LTR"; repEnd "3438"; repFamily "ERVL"; repLeft "2793"; repStart "-1788"; chr12 rmsk exon 60801573 60801847 3649 - . gene_id "ERV316A3_12q14.1c"; transcript_id "ERV316A3_12q14.1c"; locus "ERV316A3_12q14.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2087"; repClass "LTR"; repEnd "2792"; repFamily "ERVL"; repLeft "2533"; repStart "-2434"; ### ERVLB4_12q14.1b ### chr12 rmsk gene 60838669 60840173 . - . gene_id "ERVLB4_12q14.1b"; transcript_id "ERVLB4_12q14.1b"; locus "ERVLB4_12q14.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1288"; model_cov "926"; model_pct "16.2"; chr12 rmsk exon 60838669 60838961 3921 - . gene_id "ERVLB4_12q14.1b"; transcript_id "ERVLB4_12q14.1b"; locus "ERVLB4_12q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1288"; repClass "LTR"; repEnd "5440"; repFamily "ERVL"; repLeft "5165"; repStart "-274"; chr12 rmsk exon 60839304 60839743 3921 - . gene_id "ERVLB4_12q14.1b"; transcript_id "ERVLB4_12q14.1b"; locus "ERVLB4_12q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1288"; repClass "LTR"; repEnd "5164"; repFamily "ERVL"; repLeft "4704"; repStart "-550"; chr12 rmsk exon 60839983 60840173 958 - . gene_id "ERVLB4_12q14.1b"; transcript_id "ERVLB4_12q14.1b"; locus "ERVLB4_12q14.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1288"; repClass "LTR"; repEnd "192"; repFamily "ERVL"; repLeft "1"; repStart "-5522"; ### HERVH_12q14.1c ### chr12 rmsk gene 60951268 60957619 . - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0943"; model_cov "5771"; model_pct "74.8"; chr12 rmsk exon 60951268 60951671 2654 - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0943"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 60951672 60952050 2447 - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0943"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 60952019 60952248 1221 - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0943"; repClass "LTR"; repEnd "5829"; repFamily "ERV1"; repLeft "5597"; repStart "-1884"; chr12 rmsk exon 60952246 60957213 25759 - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0943"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr12 rmsk exon 60957216 60957619 2757 - . gene_id "HERVH_12q14.1c"; transcript_id "HERVH_12q14.1c"; locus "HERVH_12q14.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0943"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HERVL_12q14.1d ### chr12 rmsk gene 61121194 61124512 . + . gene_id "HERVL_12q14.1d"; transcript_id "HERVL_12q14.1d"; locus "HERVL_12q14.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0975"; model_cov "2239"; model_pct "39.6"; chr12 rmsk exon 61121194 61121731 1650 + . gene_id "HERVL_12q14.1d"; transcript_id "HERVL_12q14.1d"; locus "HERVL_12q14.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0975"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr12 rmsk exon 61121741 61123963 15973 + . gene_id "HERVL_12q14.1d"; transcript_id "HERVL_12q14.1d"; locus "HERVL_12q14.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0975"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3415"; chr12 rmsk exon 61123964 61124512 1771 + . gene_id "HERVL_12q14.1d"; transcript_id "HERVL_12q14.1d"; locus "HERVL_12q14.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0975"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLE_12q14.1d ### chr12 rmsk gene 61132269 61134102 . + . gene_id "ERVLE_12q14.1d"; transcript_id "ERVLE_12q14.1d"; locus "ERVLE_12q14.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2733"; model_cov "1411"; model_pct "24.9"; chr12 rmsk exon 61132269 61133162 2915 + . gene_id "ERVLE_12q14.1d"; transcript_id "ERVLE_12q14.1d"; locus "ERVLE_12q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2733"; repClass "LTR"; repEnd "935"; repFamily "ERVL"; repLeft "-4732"; repStart "1"; chr12 rmsk exon 61133725 61134102 2915 + . gene_id "ERVLE_12q14.1d"; transcript_id "ERVLE_12q14.1d"; locus "ERVLE_12q14.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2733"; repClass "LTR"; repEnd "1366"; repFamily "ERVL"; repLeft "-4301"; repStart "889"; ### HUERSP3_12q14.1b ### chr12 rmsk gene 61148860 61150491 . + . gene_id "HUERSP3_12q14.1b"; transcript_id "HUERSP3_12q14.1b"; locus "HUERSP3_12q14.1b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0155"; model_cov "1745"; model_pct "19.6"; chr12 rmsk exon 61148860 61150491 7041 + . gene_id "HUERSP3_12q14.1b"; transcript_id "HUERSP3_12q14.1b"; locus "HUERSP3_12q14.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0155"; repClass "LTR"; repEnd "7841"; repFamily "ERV1"; repLeft "-1078"; repStart "6096"; ### HERVL_12q14.1e ### chr12 rmsk gene 61249675 61253789 . - . gene_id "HERVL_12q14.1e"; transcript_id "HERVL_12q14.1e"; locus "HERVL_12q14.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0976"; model_cov "3700"; model_pct "65.4"; chr12 rmsk exon 61249675 61250098 2852 - . gene_id "HERVL_12q14.1e"; transcript_id "HERVL_12q14.1e"; locus "HERVL_12q14.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0976"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr12 rmsk exon 61250101 61253789 28093 - . gene_id "HERVL_12q14.1e"; transcript_id "HERVL_12q14.1e"; locus "HERVL_12q14.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0976"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "1952"; repStart "-2"; ### ERVLE_12q14.1e ### chr12 rmsk gene 61432366 61434627 . + . gene_id "ERVLE_12q14.1e"; transcript_id "ERVLE_12q14.1e"; locus "ERVLE_12q14.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2734"; model_cov "2270"; model_pct "40.1"; chr12 rmsk exon 61432366 61434627 3473 + . gene_id "ERVLE_12q14.1e"; transcript_id "ERVLE_12q14.1e"; locus "ERVLE_12q14.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2734"; repClass "LTR"; repEnd "4409"; repFamily "ERVL"; repLeft "-1258"; repStart "2139"; ### HERVH_12q14.1d ### chr12 rmsk gene 61587106 61592931 . + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0944"; model_cov "5110"; model_pct "66.3"; chr12 rmsk exon 61587106 61587480 2225 + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0944"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "-13"; chr12 rmsk exon 61587483 61589800 4308 + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0944"; repClass "LTR"; repEnd "2137"; repFamily "ERV1"; repLeft "-5576"; repStart "1"; chr12 rmsk exon 61589788 61592103 8079 + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0944"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "3885"; chr12 rmsk exon 61592121 61592556 2870 + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0944"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7277"; chr12 rmsk exon 61592557 61592931 2379 + . gene_id "HERVH_12q14.1d"; transcript_id "HERVH_12q14.1d"; locus "HERVH_12q14.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0944"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_12q14.1b ### chr12 rmsk gene 61693875 61699920 . + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0284"; model_cov "5839"; model_pct "100.0"; chr12 rmsk exon 61693875 61693943 301 + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0284"; repClass "LTR"; repEnd "-49"; repFamily "ERV1"; repLeft "-550"; repStart "-112"; chr12 rmsk exon 61693959 61694345 1870 + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0284"; repClass "LTR"; repEnd "-88"; repFamily "ERV1"; repLeft "-589"; repStart "-462"; chr12 rmsk exon 61694422 61695774 5067 + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0284"; repClass "LTR"; repEnd "4918"; repFamily "ERV1"; repLeft "-299"; repStart "3991"; chr12 rmsk exon 61695772 61699466 11549 + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0284"; repClass "LTR"; repEnd "5167"; repFamily "ERV1"; repLeft "-50"; repStart "255"; chr12 rmsk exon 61699477 61699920 2452 + . gene_id "MER61_12q14.1b"; transcript_id "MER61_12q14.1b"; locus "MER61_12q14.1b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0284"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_12q14.1d ### chr12 rmsk gene 62216000 62217837 . + . gene_id "ERV316A3_12q14.1d"; transcript_id "ERV316A3_12q14.1d"; locus "ERV316A3_12q14.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2090"; model_cov "1622"; model_pct "31.0"; chr12 rmsk exon 62216000 62217509 2917 + . gene_id "ERV316A3_12q14.1d"; transcript_id "ERV316A3_12q14.1d"; locus "ERV316A3_12q14.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2090"; repClass "LTR"; repEnd "2969"; repFamily "ERVL"; repLeft "-2257"; repStart "1347"; chr12 rmsk exon 62217510 62217837 1164 + . gene_id "ERV316A3_12q14.1d"; transcript_id "ERV316A3_12q14.1d"; locus "ERV316A3_12q14.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2090"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "112"; ### ERV316A3_12q14.1e ### chr12 rmsk gene 62251539 62253373 . - . gene_id "ERV316A3_12q14.1e"; transcript_id "ERV316A3_12q14.1e"; locus "ERV316A3_12q14.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2091"; model_cov "1393"; model_pct "26.7"; chr12 rmsk exon 62251539 62251922 1374 - . gene_id "ERV316A3_12q14.1e"; transcript_id "ERV316A3_12q14.1e"; locus "ERV316A3_12q14.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2091"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "18"; repStart "-17"; chr12 rmsk exon 62252041 62253373 3725 - . gene_id "ERV316A3_12q14.1e"; transcript_id "ERV316A3_12q14.1e"; locus "ERV316A3_12q14.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2091"; repClass "LTR"; repEnd "5073"; repFamily "ERVL"; repLeft "3680"; repStart "-153"; ### HERVH_12q14.2 ### chr12 rmsk gene 62758771 62760761 . + . gene_id "HERVH_12q14.2"; transcript_id "HERVH_12q14.2"; locus "HERVH_12q14.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0945"; model_cov "1515"; model_pct "19.6"; chr12 rmsk exon 62758771 62759202 3459 + . gene_id "HERVH_12q14.2"; transcript_id "HERVH_12q14.2"; locus "HERVH_12q14.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0945"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 62759203 62760761 3996 + . gene_id "HERVH_12q14.2"; transcript_id "HERVH_12q14.2"; locus "HERVH_12q14.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0945"; repClass "LTR"; repEnd "1516"; repFamily "ERV1"; repLeft "-6197"; repStart "1"; ### ERVLE_12q14.2 ### chr12 rmsk gene 63075897 63079683 . + . gene_id "ERVLE_12q14.2"; transcript_id "ERVLE_12q14.2"; locus "ERVLE_12q14.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2736"; model_cov "2610"; model_pct "46.1"; chr12 rmsk exon 63075897 63076242 303 + . gene_id "ERVLE_12q14.2"; transcript_id "ERVLE_12q14.2"; locus "ERVLE_12q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2736"; repClass "LTR"; repEnd "749"; repFamily "ERVL"; repLeft "-4918"; repStart "366"; chr12 rmsk exon 63076566 63078548 3850 + . gene_id "ERVLE_12q14.2"; transcript_id "ERVLE_12q14.2"; locus "ERVLE_12q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2736"; repClass "LTR"; repEnd "3398"; repFamily "ERVL"; repLeft "-2269"; repStart "1341"; chr12 rmsk exon 63079527 63079683 483 + . gene_id "ERVLE_12q14.2"; transcript_id "ERVLE_12q14.2"; locus "ERVLE_12q14.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2736"; repClass "LTR"; repEnd "3824"; repFamily "ERVL"; repLeft "-1843"; repStart "3654"; ### ERVLB4_12q14.2 ### chr12 rmsk gene 63384937 63385974 . - . gene_id "ERVLB4_12q14.2"; transcript_id "ERVLB4_12q14.2"; locus "ERVLB4_12q14.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1289"; model_cov "624"; model_pct "10.9"; chr12 rmsk exon 63384937 63385325 978 - . gene_id "ERVLB4_12q14.2"; transcript_id "ERVLB4_12q14.2"; locus "ERVLB4_12q14.2"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1289"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "68"; repStart "0"; chr12 rmsk exon 63385339 63385515 1080 - . gene_id "ERVLB4_12q14.2"; transcript_id "ERVLB4_12q14.2"; locus "ERVLB4_12q14.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1289"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5536"; repStart "0"; chr12 rmsk exon 63385526 63385974 3087 - . gene_id "ERVLB4_12q14.2"; transcript_id "ERVLB4_12q14.2"; locus "ERVLB4_12q14.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1289"; repClass "LTR"; repEnd "4742"; repFamily "ERVL"; repLeft "4296"; repStart "-972"; ### HERVL18_12q14.2 ### chr12 rmsk gene 63397783 63401356 . + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0116"; model_cov "1992"; model_pct "32.9"; chr12 rmsk exon 63397783 63398114 1069 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1419"; chr12 rmsk exon 63398117 63398371 1268 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2123"; chr12 rmsk exon 63398371 63399086 5198 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "3437"; repFamily "ERVL"; repLeft "-2610"; repStart "2720"; chr12 rmsk exon 63399728 63399853 5198 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "3553"; repFamily "ERVL"; repLeft "-2494"; repStart "3438"; chr12 rmsk exon 63399847 63400029 1012 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "4452"; repFamily "ERVL"; repLeft "-1595"; repStart "4264"; chr12 rmsk exon 63400010 63400164 762 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "5116"; chr12 rmsk exon 63400165 63400266 497 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5946"; chr12 rmsk exon 63400833 63401356 1039 + . gene_id "HERVL18_12q14.2"; transcript_id "HERVL18_12q14.2"; locus "HERVL18_12q14.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0116"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### PRIMA4_12q14.2 ### chr12 rmsk gene 63401900 63406219 . - . gene_id "PRIMA4_12q14.2"; transcript_id "PRIMA4_12q14.2"; locus "PRIMA4_12q14.2"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0164"; model_cov "4220"; model_pct "51.0"; chr12 rmsk exon 63401900 63405521 4737 - . gene_id "PRIMA4_12q14.2"; transcript_id "PRIMA4_12q14.2"; locus "PRIMA4_12q14.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0164"; repClass "LTR"; repEnd "6241"; repFamily "ERV1"; repLeft "2154"; repStart "-2029"; chr12 rmsk exon 63406092 63406219 303 - . gene_id "PRIMA4_12q14.2"; transcript_id "PRIMA4_12q14.2"; locus "PRIMA4_12q14.2"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0164"; repClass "LTR"; repEnd "1893"; repFamily "ERV1"; repLeft "1760"; repStart "-6377"; ### HERVL_12q14.2a ### chr12 rmsk gene 64129134 64136221 . - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0977"; model_cov "5649"; model_pct "99.9"; chr12 rmsk exon 64129134 64129564 3354 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr12 rmsk exon 64129565 64129975 44845 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5227"; repStart "0"; chr12 rmsk exon 64130009 64131894 44845 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3284"; repStart "-428"; chr12 rmsk exon 64132184 64134139 44845 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "1371"; repStart "-2371"; chr12 rmsk exon 64134436 64135793 44845 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "1370"; repFamily "ERVL"; repLeft "2"; repStart "-4284"; chr12 rmsk exon 64135794 64136221 3283 - . gene_id "HERVL_12q14.2a"; transcript_id "HERVL_12q14.2a"; locus "HERVL_12q14.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0977"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_12q14.2b ### chr12 rmsk gene 64339856 64346520 . - . gene_id "HERVL_12q14.2b"; transcript_id "HERVL_12q14.2b"; locus "HERVL_12q14.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0978"; model_cov "5652"; model_pct "100.0"; chr12 rmsk exon 64339856 64339906 394 - . gene_id "HERVL_12q14.2b"; transcript_id "HERVL_12q14.2b"; locus "HERVL_12q14.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0978"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "394"; repStart "0"; chr12 rmsk exon 64340014 64340411 3155 - . gene_id "HERVL_12q14.2b"; transcript_id "HERVL_12q14.2b"; locus "HERVL_12q14.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0978"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "1"; repStart "-46"; chr12 rmsk exon 64340412 64346075 45998 - . gene_id "HERVL_12q14.2b"; transcript_id "HERVL_12q14.2b"; locus "HERVL_12q14.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0978"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr12 rmsk exon 64346077 64346520 3448 - . gene_id "HERVL_12q14.2b"; transcript_id "HERVL_12q14.2b"; locus "HERVL_12q14.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0978"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER61_12q14.2 ### chr12 rmsk gene 64347628 64352825 . + . gene_id "MER61_12q14.2"; transcript_id "MER61_12q14.2"; locus "MER61_12q14.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0285"; model_cov "3262"; model_pct "62.5"; chr12 rmsk exon 64347628 64347996 3869 + . gene_id "MER61_12q14.2"; transcript_id "MER61_12q14.2"; locus "MER61_12q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0285"; repClass "LTR"; repEnd "2123"; repFamily "ERV1"; repLeft "-3094"; repStart "1417"; chr12 rmsk exon 64348286 64348994 3869 + . gene_id "MER61_12q14.2"; transcript_id "MER61_12q14.2"; locus "MER61_12q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0285"; repClass "LTR"; repEnd "2614"; repFamily "ERV1"; repLeft "-2603"; repStart "2124"; chr12 rmsk exon 64350433 64352475 13405 + . gene_id "MER61_12q14.2"; transcript_id "MER61_12q14.2"; locus "MER61_12q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0285"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3151"; chr12 rmsk exon 64352493 64352825 1925 + . gene_id "MER61_12q14.2"; transcript_id "MER61_12q14.2"; locus "MER61_12q14.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0285"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "86"; ### ERV316A3_12q14.2 ### chr12 rmsk gene 64555954 64561190 . - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2092"; model_cov "3263"; model_pct "62.4"; chr12 rmsk exon 64555954 64556179 1612 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "244"; repStart "-5"; chr12 rmsk exon 64556441 64556687 1648 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "1"; repStart "-220"; chr12 rmsk exon 64556763 64556834 5993 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "5094"; repFamily "ERVL"; repLeft "5042"; repStart "-132"; chr12 rmsk exon 64557136 64558457 5993 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "5041"; repFamily "ERVL"; repLeft "3720"; repStart "-185"; chr12 rmsk exon 64558455 64558574 474 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "2920"; repFamily "ERVL"; repLeft "2797"; repStart "-2306"; chr12 rmsk exon 64558589 64559203 1759 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "1218"; repStart "-3386"; chr12 rmsk exon 64559577 64560704 3202 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "4"; repStart "-4077"; chr12 rmsk exon 64560707 64561190 1657 - . gene_id "ERV316A3_12q14.2"; transcript_id "ERV316A3_12q14.2"; locus "ERV316A3_12q14.2"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2092"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "5"; repStart "-3"; ### ERV316A3_12q14.3a ### chr12 rmsk gene 64767289 64768073 . + . gene_id "ERV316A3_12q14.3a"; transcript_id "ERV316A3_12q14.3a"; locus "ERV316A3_12q14.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2093"; model_cov "736"; model_pct "14.1"; chr12 rmsk exon 64767289 64768073 6339 + . gene_id "ERV316A3_12q14.3a"; transcript_id "ERV316A3_12q14.3a"; locus "ERV316A3_12q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2093"; repClass "LTR"; repEnd "2920"; repFamily "ERVL"; repLeft "-2306"; repStart "2184"; ### ERV316A3_12q14.3b ### chr12 rmsk gene 64771136 64772424 . + . gene_id "ERV316A3_12q14.3b"; transcript_id "ERV316A3_12q14.3b"; locus "ERV316A3_12q14.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2094"; model_cov "993"; model_pct "19.0"; chr12 rmsk exon 64771136 64771972 6339 + . gene_id "ERV316A3_12q14.3b"; transcript_id "ERV316A3_12q14.3b"; locus "ERV316A3_12q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2094"; repClass "LTR"; repEnd "3762"; repFamily "ERVL"; repLeft "-1464"; repStart "2921"; chr12 rmsk exon 64772259 64772424 6339 + . gene_id "ERV316A3_12q14.3b"; transcript_id "ERV316A3_12q14.3b"; locus "ERV316A3_12q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2094"; repClass "LTR"; repEnd "3915"; repFamily "ERVL"; repLeft "-1311"; repStart "3763"; ### MER34B_12q14.3 ### chr12 rmsk gene 65189570 65195916 . - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0214"; model_cov "3748"; model_pct "70.0"; chr12 rmsk exon 65189570 65190202 6914 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "4568"; repFamily "ERV1"; repLeft "3963"; repStart "-788"; chr12 rmsk exon 65190798 65191650 6914 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "3962"; repFamily "ERV1"; repLeft "3115"; repStart "-1394"; chr12 rmsk exon 65191948 65193054 6914 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "3114"; repFamily "ERV1"; repLeft "1538"; repStart "-2242"; chr12 rmsk exon 65193846 65194126 1417 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "1877"; repFamily "ERV1"; repLeft "1588"; repStart "-3479"; chr12 rmsk exon 65195186 65195600 1132 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "1578"; repFamily "ERV1"; repLeft "1147"; repStart "-3778"; chr12 rmsk exon 65195602 65195916 1071 - . gene_id "MER34B_12q14.3"; transcript_id "MER34B_12q14.3"; locus "MER34B_12q14.3"; repName "MER34C"; geneRegion "ltr"; locid "MER34B-int_0214"; repClass "LTR"; repEnd "392"; repFamily "ERV1"; repLeft "59"; repStart "-159"; ### ERVLE_12q14.3a ### chr12 rmsk gene 66256833 66258223 . - . gene_id "ERVLE_12q14.3a"; transcript_id "ERVLE_12q14.3a"; locus "ERVLE_12q14.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2738"; model_cov "1103"; model_pct "19.5"; chr12 rmsk exon 66256833 66257540 2802 - . gene_id "ERVLE_12q14.3a"; transcript_id "ERVLE_12q14.3a"; locus "ERVLE_12q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2738"; repClass "LTR"; repEnd "5159"; repFamily "ERVL"; repLeft "4449"; repStart "-508"; chr12 rmsk exon 66257859 66258223 2802 - . gene_id "ERVLE_12q14.3a"; transcript_id "ERVLE_12q14.3a"; locus "ERVLE_12q14.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2738"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "4055"; repStart "-1219"; ### ERVLE_12q14.3b ### chr12 rmsk gene 67218572 67222948 . - . gene_id "ERVLE_12q14.3b"; transcript_id "ERVLE_12q14.3b"; locus "ERVLE_12q14.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2739"; model_cov "3791"; model_pct "66.9"; chr12 rmsk exon 67218572 67220089 3097 - . gene_id "ERVLE_12q14.3b"; transcript_id "ERVLE_12q14.3b"; locus "ERVLE_12q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2739"; repClass "LTR"; repEnd "3081"; repFamily "ERVL"; repLeft "1446"; repStart "-2586"; chr12 rmsk exon 67220216 67221284 2514 - . gene_id "ERVLE_12q14.3b"; transcript_id "ERVLE_12q14.3b"; locus "ERVLE_12q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2739"; repClass "LTR"; repEnd "1886"; repFamily "ERVL"; repLeft "825"; repStart "-3781"; chr12 rmsk exon 67221308 67222127 1044 - . gene_id "ERVLE_12q14.3b"; transcript_id "ERVLE_12q14.3b"; locus "ERVLE_12q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2739"; repClass "LTR"; repEnd "1883"; repFamily "ERVL"; repLeft "959"; repStart "-3784"; chr12 rmsk exon 67222777 67222948 274 - . gene_id "ERVLE_12q14.3b"; transcript_id "ERVLE_12q14.3b"; locus "ERVLE_12q14.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2739"; repClass "LTR"; repEnd "865"; repFamily "ERVL"; repLeft "694"; repStart "-4802"; ### LTR57_12q14.3 ### chr12 rmsk gene 67258000 67259244 . + . gene_id "LTR57_12q14.3"; transcript_id "LTR57_12q14.3"; locus "LTR57_12q14.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0128"; model_cov "983"; model_pct "18.4"; chr12 rmsk exon 67258000 67258385 3275 + . gene_id "LTR57_12q14.3"; transcript_id "LTR57_12q14.3"; locus "LTR57_12q14.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0128"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "-4354"; repStart "609"; chr12 rmsk exon 67258680 67259244 3275 + . gene_id "LTR57_12q14.3"; transcript_id "LTR57_12q14.3"; locus "LTR57_12q14.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0128"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "-3750"; repStart "990"; ### MER4_12q14.3 ### chr12 rmsk gene 67259639 67262746 . + . gene_id "MER4_12q14.3"; transcript_id "MER4_12q14.3"; locus "MER4_12q14.3"; category "internal"; intModel "MER4-int"; locid "MER4-int_0589"; model_cov "2522"; model_pct "38.2"; chr12 rmsk exon 67259639 67259695 3022 + . gene_id "MER4_12q14.3"; transcript_id "MER4_12q14.3"; locus "MER4_12q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0589"; repClass "LTR"; repEnd "3784"; repFamily "ERV1"; repLeft "-2814"; repStart "3729"; chr12 rmsk exon 67260037 67260745 4615 + . gene_id "MER4_12q14.3"; transcript_id "MER4_12q14.3"; locus "MER4_12q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0589"; repClass "LTR"; repEnd "4481"; repFamily "ERV1"; repLeft "-2117"; repStart "3785"; chr12 rmsk exon 67261058 67262746 4615 + . gene_id "MER4_12q14.3"; transcript_id "MER4_12q14.3"; locus "MER4_12q14.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0589"; repClass "LTR"; repEnd "6176"; repFamily "ERV1"; repLeft "-422"; repStart "4405"; ### ERVL_12q15 ### chr12 rmsk gene 67620069 67626465 . + . gene_id "ERVL_12q15"; transcript_id "ERVL_12q15"; locus "ERVL_12q15"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0325"; model_cov "5743"; model_pct "99.8"; chr12 rmsk exon 67620069 67620683 1912 + . gene_id "ERVL_12q15"; transcript_id "ERVL_12q15"; locus "ERVL_12q15"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0325"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "-14"; repStart "-80"; chr12 rmsk exon 67620706 67625944 16501 + . gene_id "ERVL_12q15"; transcript_id "ERVL_12q15"; locus "ERVL_12q15"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0325"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "14"; chr12 rmsk exon 67625947 67626465 3380 + . gene_id "ERVL_12q15"; transcript_id "ERVL_12q15"; locus "ERVL_12q15"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0325"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HUERSP3B_12q15 ### chr12 rmsk gene 67713210 67714735 . + . gene_id "HUERSP3B_12q15"; transcript_id "HUERSP3B_12q15"; locus "HUERSP3B_12q15"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0101"; model_cov "926"; model_pct "12.5"; chr12 rmsk exon 67713210 67713401 1185 + . gene_id "HUERSP3B_12q15"; transcript_id "HUERSP3B_12q15"; locus "HUERSP3B_12q15"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0101"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "451"; chr12 rmsk exon 67713441 67714333 5705 + . gene_id "HUERSP3B_12q15"; transcript_id "HUERSP3B_12q15"; locus "HUERSP3B_12q15"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0101"; repClass "LTR"; repEnd "7008"; repFamily "ERV1"; repLeft "-410"; repStart "6082"; chr12 rmsk exon 67714335 67714735 2476 + . gene_id "HUERSP3B_12q15"; transcript_id "HUERSP3B_12q15"; locus "HUERSP3B_12q15"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0101"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-84"; repStart "160"; ### HERVH_12q15a ### chr12 rmsk gene 67766804 67772346 . - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0946"; model_cov "4720"; model_pct "61.2"; chr12 rmsk exon 67766804 67767256 3570 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 67767257 67767630 2327 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 67767629 67767851 1448 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 67767859 67768294 2627 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4681"; repStart "-2567"; chr12 rmsk exon 67768334 67768842 3447 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 67768833 67768982 1011 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr12 rmsk exon 67768962 67771893 20938 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 67771896 67772346 3543 - . gene_id "HERVH_12q15a"; transcript_id "HERVH_12q15a"; locus "HERVH_12q15a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0946"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4B_12q15a ### chr12 rmsk gene 68462340 68463620 . - . gene_id "MER4B_12q15a"; transcript_id "MER4B_12q15a"; locus "MER4B_12q15a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0336"; model_cov "962"; model_pct "14.2"; chr12 rmsk exon 68462340 68463137 3935 - . gene_id "MER4B_12q15a"; transcript_id "MER4B_12q15a"; locus "MER4B_12q15a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0336"; repClass "LTR"; repEnd "4048"; repFamily "ERV1"; repLeft "3200"; repStart "-2710"; chr12 rmsk exon 68463505 68463620 3935 - . gene_id "MER4B_12q15a"; transcript_id "MER4B_12q15a"; locus "MER4B_12q15a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0336"; repClass "LTR"; repEnd "3199"; repFamily "ERV1"; repLeft "3085"; repStart "-3559"; ### HARLEQUIN_12q15 ### chr12 rmsk gene 68540228 68547978 . + . gene_id "HARLEQUIN_12q15"; transcript_id "HARLEQUIN_12q15"; locus "HARLEQUIN_12q15"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0143"; model_cov "6894"; model_pct "100.0"; chr12 rmsk exon 68540228 68540689 3885 + . gene_id "HARLEQUIN_12q15"; transcript_id "HARLEQUIN_12q15"; locus "HARLEQUIN_12q15"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0143"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 68540690 68547511 36143 + . gene_id "HARLEQUIN_12q15"; transcript_id "HARLEQUIN_12q15"; locus "HARLEQUIN_12q15"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0143"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr12 rmsk exon 68547512 68547978 3776 + . gene_id "HARLEQUIN_12q15"; transcript_id "HARLEQUIN_12q15"; locus "HARLEQUIN_12q15"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0143"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_12q15b ### chr12 rmsk gene 69139518 69143430 . + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0337"; model_cov "2641"; model_pct "39.1"; chr12 rmsk exon 69139518 69140271 5740 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 69140272 69141104 5552 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-5911"; repStart "1"; chr12 rmsk exon 69141126 69141368 1265 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "1188"; repFamily "ERV1"; repLeft "-5570"; repStart "924"; chr12 rmsk exon 69141357 69141507 2573 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "2039"; repFamily "ERV1"; repLeft "-4719"; repStart "1920"; chr12 rmsk exon 69141809 69142031 2573 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "2270"; repFamily "ERV1"; repLeft "-4488"; repStart "2040"; chr12 rmsk exon 69142330 69142393 2573 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "2342"; repFamily "ERV1"; repLeft "-4416"; repStart "2271"; chr12 rmsk exon 69142694 69143430 3086 + . gene_id "MER4B_12q15b"; transcript_id "MER4B_12q15b"; locus "MER4B_12q15b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0337"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-4100"; repStart "1547"; ### MER4B_12q15c ### chr12 rmsk gene 69143783 69146662 . + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0338"; model_cov "2333"; model_pct "34.5"; chr12 rmsk exon 69143783 69144228 4656 + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0338"; repClass "LTR"; repEnd "2458"; repFamily "ERV1"; repLeft "-4300"; repStart "1989"; chr12 rmsk exon 69144527 69145129 4656 + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0338"; repClass "LTR"; repEnd "3078"; repFamily "ERV1"; repLeft "-3680"; repStart "2459"; chr12 rmsk exon 69145147 69145540 2398 + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0338"; repClass "LTR"; repEnd "3836"; repFamily "ERV1"; repLeft "-2922"; repStart "3436"; chr12 rmsk exon 69145537 69146314 4765 + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0338"; repClass "LTR"; repEnd "6604"; repFamily "ERV1"; repLeft "-154"; repStart "5806"; chr12 rmsk exon 69146607 69146662 4765 + . gene_id "MER4B_12q15c"; transcript_id "MER4B_12q15c"; locus "MER4B_12q15c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0338"; repClass "LTR"; repEnd "6652"; repFamily "ERV1"; repLeft "-106"; repStart "6605"; ### MER4_12q15a ### chr12 rmsk gene 69185979 69192204 . + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0590"; model_cov "4313"; model_pct "65.4"; chr12 rmsk exon 69185979 69186419 3333 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0590"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 69186423 69186692 1840 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "298"; repFamily "ERV1"; repLeft "-6300"; repStart "1"; chr12 rmsk exon 69186808 69186976 6020 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "1548"; repFamily "ERV1"; repLeft "-5050"; repStart "1365"; chr12 rmsk exon 69187271 69187445 6020 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "1728"; repFamily "ERV1"; repLeft "-4870"; repStart "1549"; chr12 rmsk exon 69187813 69188534 6020 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "1732"; chr12 rmsk exon 69188778 69188969 4432 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "2931"; repFamily "ERV1"; repLeft "-3667"; repStart "2737"; chr12 rmsk exon 69189242 69189985 4432 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2799"; chr12 rmsk exon 69189965 69191766 11487 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0590"; repClass "LTR"; repEnd "5653"; repFamily "ERV1"; repLeft "-945"; repStart "3837"; chr12 rmsk exon 69191767 69192204 3135 + . gene_id "MER4_12q15a"; transcript_id "MER4_12q15a"; locus "MER4_12q15a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0590"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "17"; ### HML1_12q15a ### chr12 rmsk gene 69201147 69203311 . + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0088"; model_cov "2053"; model_pct "33.7"; chr12 rmsk exon 69201147 69201366 651 + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0088"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-6970"; repStart "-1091"; chr12 rmsk exon 69201424 69201523 406 + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0088"; repClass "LTR"; repEnd "-468"; repFamily "ERVK"; repLeft "-6564"; repStart "-567"; chr12 rmsk exon 69201513 69202458 4803 + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0088"; repClass "LTR"; repEnd "1162"; repFamily "ERVK"; repLeft "-4934"; repStart "174"; chr12 rmsk exon 69202458 69203194 5166 + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0088"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5202"; chr12 rmsk exon 69203257 69203311 460 + . gene_id "HML1_12q15a"; transcript_id "HML1_12q15a"; locus "HML1_12q15a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0088"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5960"; ### HML5_12q15 ### chr12 rmsk gene 69328937 69332487 . - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0089"; model_cov "2266"; model_pct "33.1"; chr12 rmsk exon 69328937 69329006 469 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "502"; repStart "0"; chr12 rmsk exon 69329008 69329693 3075 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "4881"; repFamily "ERVK"; repLeft "4201"; repStart "-1956"; chr12 rmsk exon 69329714 69330365 3513 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "4227"; repFamily "ERVK"; repLeft "3602"; repStart "-2610"; chr12 rmsk exon 69330361 69330441 563 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "3554"; repFamily "ERVK"; repLeft "3474"; repStart "-3283"; chr12 rmsk exon 69330827 69330984 904 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "2489"; repFamily "ERVK"; repLeft "2330"; repStart "-4348"; chr12 rmsk exon 69331227 69331955 3640 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "759"; repFamily "ERVK"; repLeft "37"; repStart "-6078"; chr12 rmsk exon 69332012 69332070 225 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "598"; repFamily "ERVK"; repLeft "538"; repStart "-2"; chr12 rmsk exon 69332136 69332487 2724 - . gene_id "HML5_12q15"; transcript_id "HML5_12q15"; locus "HML5_12q15"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0089"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "193"; repStart "0"; ### HERVI_12q15 ### chr12 rmsk gene 69644373 69645310 . - . gene_id "HERVI_12q15"; transcript_id "HERVI_12q15"; locus "HERVI_12q15"; category "internal"; intModel "HERVI-int"; locid "HERVI-int_0026"; model_cov "933"; model_pct "12.0"; chr12 rmsk exon 69644373 69645310 4956 - . gene_id "HERVI_12q15"; transcript_id "HERVI_12q15"; locus "HERVI_12q15"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0026"; repClass "LTR"; repEnd "7745"; repFamily "ERV1"; repLeft "6812"; repStart "-40"; ### HERVH_12q15b ### chr12 rmsk gene 70085290 70090295 . + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0947"; model_cov "4029"; model_pct "52.2"; chr12 rmsk exon 70085290 70085729 3678 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 70085730 70088805 16033 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr12 rmsk exon 70088800 70088947 820 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 70088938 70089379 2769 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "-3783"; repStart "3492"; chr12 rmsk exon 70089384 70089446 395 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5753"; chr12 rmsk exon 70089447 70089824 2369 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 70089825 70090295 4087 + . gene_id "HERVH_12q15b"; transcript_id "HERVH_12q15b"; locus "HERVH_12q15b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0947"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_12q15c ### chr12 rmsk gene 70131269 70132796 . - . gene_id "HERVH_12q15c"; transcript_id "HERVH_12q15c"; locus "HERVH_12q15c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0948"; model_cov "1095"; model_pct "14.2"; chr12 rmsk exon 70131269 70131687 3491 - . gene_id "HERVH_12q15c"; transcript_id "HERVH_12q15c"; locus "HERVH_12q15c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0948"; repClass "LTR"; repEnd "420"; repFamily "ERV1"; repLeft "1"; repStart "-44"; chr12 rmsk exon 70131688 70132259 3656 - . gene_id "HERVH_12q15c"; transcript_id "HERVH_12q15c"; locus "HERVH_12q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0948"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7149"; repStart "0"; chr12 rmsk exon 70132241 70132505 1532 - . gene_id "HERVH_12q15c"; transcript_id "HERVH_12q15c"; locus "HERVH_12q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0948"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr12 rmsk exon 70132534 70132796 2038 - . gene_id "HERVH_12q15c"; transcript_id "HERVH_12q15c"; locus "HERVH_12q15c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0948"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "4572"; repStart "-2879"; ### MER4_12q15b ### chr12 rmsk gene 70150246 70151848 . + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0591"; model_cov "1023"; model_pct "15.5"; chr12 rmsk exon 70150246 70150784 2961 + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0591"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr12 rmsk exon 70150787 70151261 2766 + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0591"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "-6035"; repStart "1"; chr12 rmsk exon 70151274 70151334 291 + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0591"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "627"; chr12 rmsk exon 70151322 70151413 331 + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0591"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-7235"; repStart "-722"; chr12 rmsk exon 70151483 70151848 1389 + . gene_id "MER4_12q15b"; transcript_id "MER4_12q15b"; locus "MER4_12q15b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0591"; repClass "LTR"; repEnd "2426"; repFamily "ERV1"; repLeft "-4172"; repStart "2109"; ### MER4_12q15c ### chr12 rmsk gene 70151862 70158952 . + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0592"; model_cov "4904"; model_pct "74.3"; chr12 rmsk exon 70151862 70153205 6421 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0592"; repClass "LTR"; repEnd "1496"; repFamily "ERV1"; repLeft "-5102"; repStart "36"; chr12 rmsk exon 70153571 70153654 4107 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0592"; repClass "LTR"; repEnd "1581"; repFamily "ERV1"; repLeft "-5017"; repStart "1497"; chr12 rmsk exon 70154683 70155576 4107 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0592"; repClass "LTR"; repEnd "2162"; repFamily "ERV1"; repLeft "-4436"; repStart "1582"; chr12 rmsk exon 70155574 70157042 15540 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0592"; repClass "LTR"; repEnd "5264"; repFamily "ERV1"; repLeft "-1334"; repStart "3815"; chr12 rmsk exon 70157119 70158416 15540 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0592"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5265"; chr12 rmsk exon 70158423 70158952 3212 + . gene_id "MER4_12q15c"; transcript_id "MER4_12q15c"; locus "MER4_12q15c"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0592"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_12q15 ### chr12 rmsk gene 70390243 70390993 . - . gene_id "ERVLE_12q15"; transcript_id "ERVLE_12q15"; locus "ERVLE_12q15"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2740"; model_cov "863"; model_pct "15.2"; chr12 rmsk exon 70390243 70390740 883 - . gene_id "ERVLE_12q15"; transcript_id "ERVLE_12q15"; locus "ERVLE_12q15"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2740"; repClass "LTR"; repEnd "3500"; repFamily "ERVL"; repLeft "2908"; repStart "-2167"; chr12 rmsk exon 70390741 70390993 491 - . gene_id "ERVLE_12q15"; transcript_id "ERVLE_12q15"; locus "ERVLE_12q15"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2740"; repClass "LTR"; repEnd "2079"; repFamily "ERVL"; repLeft "1808"; repStart "-3588"; ### HML1_12q15b ### chr12 rmsk gene 70445315 70448869 . - . gene_id "HML1_12q15b"; transcript_id "HML1_12q15b"; locus "HML1_12q15b"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0089"; model_cov "1659"; model_pct "27.2"; chr12 rmsk exon 70445315 70445502 421 - . gene_id "HML1_12q15b"; transcript_id "HML1_12q15b"; locus "HML1_12q15b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0089"; repClass "LTR"; repEnd "3764"; repFamily "ERVK"; repLeft "3572"; repStart "-2332"; chr12 rmsk exon 70447037 70447608 1031 - . gene_id "HML1_12q15b"; transcript_id "HML1_12q15b"; locus "HML1_12q15b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0089"; repClass "LTR"; repEnd "1795"; repFamily "ERVK"; repLeft "794"; repStart "-4301"; chr12 rmsk exon 70448377 70448869 293 - . gene_id "HML1_12q15b"; transcript_id "HML1_12q15b"; locus "HML1_12q15b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0089"; repClass "LTR"; repEnd "793"; repFamily "ERVK"; repLeft "327"; repStart "-5303"; ### MER61_12q15a ### chr12 rmsk gene 70467962 70472019 . + . gene_id "MER61_12q15a"; transcript_id "MER61_12q15a"; locus "MER61_12q15a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0286"; model_cov "3909"; model_pct "74.9"; chr12 rmsk exon 70467962 70468294 1722 + . gene_id "MER61_12q15a"; transcript_id "MER61_12q15a"; locus "MER61_12q15a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0286"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 70468295 70468987 2761 + . gene_id "MER61_12q15a"; transcript_id "MER61_12q15a"; locus "MER61_12q15a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0286"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr12 rmsk exon 70469328 70469370 281 + . gene_id "MER61_12q15a"; transcript_id "MER61_12q15a"; locus "MER61_12q15a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0286"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr12 rmsk exon 70469354 70472019 16685 + . gene_id "MER61_12q15a"; transcript_id "MER61_12q15a"; locus "MER61_12q15a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0286"; repClass "LTR"; repEnd "2615"; repFamily "ERV1"; repLeft "-2602"; repStart "-546"; ### MER61_12q15b ### chr12 rmsk gene 70475877 70477210 . + . gene_id "MER61_12q15b"; transcript_id "MER61_12q15b"; locus "MER61_12q15b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0287"; model_cov "1067"; model_pct "20.5"; chr12 rmsk exon 70475877 70476875 4173 + . gene_id "MER61_12q15b"; transcript_id "MER61_12q15b"; locus "MER61_12q15b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0287"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4150"; chr12 rmsk exon 70476876 70477210 1867 + . gene_id "MER61_12q15b"; transcript_id "MER61_12q15b"; locus "MER61_12q15b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0287"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLA_12q15 ### chr12 rmsk gene 70488438 70490816 . - . gene_id "PABLA_12q15"; transcript_id "PABLA_12q15"; locus "PABLA_12q15"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0115"; model_cov "3236"; model_pct "64.5"; chr12 rmsk exon 70488438 70488760 2152 - . gene_id "PABLA_12q15"; transcript_id "PABLA_12q15"; locus "PABLA_12q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0115"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4690"; repStart "-2"; chr12 rmsk exon 70488776 70490638 8771 - . gene_id "PABLA_12q15"; transcript_id "PABLA_12q15"; locus "PABLA_12q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0115"; repClass "LTR"; repEnd "4627"; repFamily "ERV1"; repLeft "1925"; repStart "-388"; chr12 rmsk exon 70490626 70490816 857 - . gene_id "PABLA_12q15"; transcript_id "PABLA_12q15"; locus "PABLA_12q15"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0115"; repClass "LTR"; repEnd "2015"; repFamily "ERV1"; repLeft "1804"; repStart "-3000"; ### MER41_12q15 ### chr12 rmsk gene 70498692 70499577 . - . gene_id "MER41_12q15"; transcript_id "MER41_12q15"; locus "MER41_12q15"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0400"; model_cov "724"; model_pct "12.2"; chr12 rmsk exon 70498692 70499392 3660 - . gene_id "MER41_12q15"; transcript_id "MER41_12q15"; locus "MER41_12q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0400"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "1"; repStart "-5322"; chr12 rmsk exon 70499402 70499478 284 - . gene_id "MER41_12q15"; transcript_id "MER41_12q15"; locus "MER41_12q15"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0400"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "1"; repStart "-5844"; chr12 rmsk exon 70499479 70499577 649 - . gene_id "MER41_12q15"; transcript_id "MER41_12q15"; locus "MER41_12q15"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0400"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "536"; repStart "0"; ### MER41_12q21.1 ### chr12 rmsk gene 71206303 71207428 . + . gene_id "MER41_12q21.1"; transcript_id "MER41_12q21.1"; locus "MER41_12q21.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0401"; model_cov "1911"; model_pct "32.1"; chr12 rmsk exon 71206303 71207428 3622 + . gene_id "MER41_12q21.1"; transcript_id "MER41_12q21.1"; locus "MER41_12q21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0401"; repClass "LTR"; repEnd "1227"; repFamily "ERV1"; repLeft "-4719"; repStart "-684"; ### ERVLE_12q21.1a ### chr12 rmsk gene 72162764 72167954 . + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2741"; model_cov "2770"; model_pct "48.9"; chr12 rmsk exon 72162764 72163721 975 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "-4542"; repStart "134"; chr12 rmsk exon 72164993 72165060 318 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "1588"; repFamily "ERVL"; repLeft "-4079"; repStart "1519"; chr12 rmsk exon 72165362 72165601 626 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "2093"; repFamily "ERVL"; repLeft "-3574"; repStart "1853"; chr12 rmsk exon 72166422 72166501 288 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "3269"; repFamily "ERVL"; repLeft "-2398"; repStart "3195"; chr12 rmsk exon 72166641 72166907 624 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3486"; chr12 rmsk exon 72166954 72167954 1544 + . gene_id "ERVLE_12q21.1a"; transcript_id "ERVLE_12q21.1a"; locus "ERVLE_12q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2741"; repClass "LTR"; repEnd "4883"; repFamily "ERVL"; repLeft "-784"; repStart "3768"; ### ERVLE_12q21.1b ### chr12 rmsk gene 72189371 72191147 . + . gene_id "ERVLE_12q21.1b"; transcript_id "ERVLE_12q21.1b"; locus "ERVLE_12q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2742"; model_cov "1890"; model_pct "33.4"; chr12 rmsk exon 72189371 72190859 3248 + . gene_id "ERVLE_12q21.1b"; transcript_id "ERVLE_12q21.1b"; locus "ERVLE_12q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2742"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "-1507"; repStart "2542"; chr12 rmsk exon 72190883 72191147 772 + . gene_id "ERVLE_12q21.1b"; transcript_id "ERVLE_12q21.1b"; locus "ERVLE_12q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2742"; repClass "LTR"; repEnd "4505"; repFamily "ERVL"; repLeft "-1162"; repStart "4233"; ### ERVLE_12q21.1c ### chr12 rmsk gene 72546096 72546639 . - . gene_id "ERVLE_12q21.1c"; transcript_id "ERVLE_12q21.1c"; locus "ERVLE_12q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2743"; model_cov "568"; model_pct "10.0"; chr12 rmsk exon 72546096 72546639 930 - . gene_id "ERVLE_12q21.1c"; transcript_id "ERVLE_12q21.1c"; locus "ERVLE_12q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2743"; repClass "LTR"; repEnd "569"; repFamily "ERVL"; repLeft "1"; repStart "-5098"; ### ERVLE_12q21.1d ### chr12 rmsk gene 72701908 72703108 . + . gene_id "ERVLE_12q21.1d"; transcript_id "ERVLE_12q21.1d"; locus "ERVLE_12q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2744"; model_cov "1130"; model_pct "19.9"; chr12 rmsk exon 72701908 72702248 444 + . gene_id "ERVLE_12q21.1d"; transcript_id "ERVLE_12q21.1d"; locus "ERVLE_12q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2744"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "-3661"; repStart "1579"; chr12 rmsk exon 72702422 72703108 752 + . gene_id "ERVLE_12q21.1d"; transcript_id "ERVLE_12q21.1d"; locus "ERVLE_12q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2744"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-1115"; repStart "3849"; ### HERVH_12q21.1a ### chr12 rmsk gene 72703222 72708969 . + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0949"; model_cov "4773"; model_pct "61.9"; chr12 rmsk exon 72703222 72703672 3372 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 72703675 72706770 17183 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr12 rmsk exon 72706750 72706899 982 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 72706899 72707389 3176 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr12 rmsk exon 72707392 72708051 4274 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 72708053 72708200 997 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "5746"; repFamily "ERV1"; repLeft "-1967"; repStart "5600"; chr12 rmsk exon 72708204 72708521 2118 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7384"; chr12 rmsk exon 72708522 72708969 3320 + . gene_id "HERVH_12q21.1a"; transcript_id "HERVH_12q21.1a"; locus "HERVH_12q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0949"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_12q21.1b ### chr12 rmsk gene 72709003 72714311 . - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0950"; model_cov "4656"; model_pct "60.4"; chr12 rmsk exon 72709003 72709120 611 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "115"; repFamily "ERV1"; repLeft "-13"; repStart "-335"; chr12 rmsk exon 72709121 72709497 2392 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 72709498 72709713 1242 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 72709715 72710378 4334 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 72710381 72711232 5590 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr12 rmsk exon 72711212 72713425 14379 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "793"; repStart "-4718"; chr12 rmsk exon 72713616 72713948 2528 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "333"; repFamily "ERV1"; repLeft "1"; repStart "-7380"; chr12 rmsk exon 72713958 72714311 2059 - . gene_id "HERVH_12q21.1b"; transcript_id "HERVH_12q21.1b"; locus "HERVH_12q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0950"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "1"; repStart "-9"; ### ERVLE_12q21.1e ### chr12 rmsk gene 72714391 72715105 . + . gene_id "ERVLE_12q21.1e"; transcript_id "ERVLE_12q21.1e"; locus "ERVLE_12q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2745"; model_cov "729"; model_pct "12.9"; chr12 rmsk exon 72714391 72715105 954 + . gene_id "ERVLE_12q21.1e"; transcript_id "ERVLE_12q21.1e"; locus "ERVLE_12q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2745"; repClass "LTR"; repEnd "5235"; repFamily "ERVL"; repLeft "-432"; repStart "4506"; ### HARLEQUIN_12q21.1 ### chr12 rmsk gene 72818310 72824798 . - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0144"; model_cov "5105"; model_pct "74.0"; chr12 rmsk exon 72818310 72818788 3820 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 72818789 72820369 9882 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5328"; repStart "0"; chr12 rmsk exon 72820385 72822288 13977 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "5247"; repFamily "ERV1"; repLeft "3352"; repStart "-1649"; chr12 rmsk exon 72822288 72823300 6839 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr12 rmsk exon 72823286 72823916 4704 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "263"; repStart "-5993"; chr12 rmsk exon 72824300 72824798 3648 - . gene_id "HARLEQUIN_12q21.1"; transcript_id "HARLEQUIN_12q21.1"; locus "HARLEQUIN_12q21.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0144"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_12q21.1c ### chr12 rmsk gene 73001848 73007727 . - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0954"; model_cov "5112"; model_pct "66.3"; chr12 rmsk exon 73001848 73002259 2761 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 73002265 73002632 2187 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "7708"; repFamily "ERV1"; repLeft "7322"; repStart "-5"; chr12 rmsk exon 73002631 73002847 1305 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 73002849 73003494 4223 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr12 rmsk exon 73003498 73004351 5684 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr12 rmsk exon 73004331 73007314 18069 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 73007317 73007727 2752 - . gene_id "HERVH_12q21.1c"; transcript_id "HERVH_12q21.1c"; locus "HERVH_12q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0954"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_12q21.1a ### chr12 rmsk gene 73162036 73163854 . + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0593"; model_cov "1077"; model_pct "16.3"; chr12 rmsk exon 73162036 73162460 3090 + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0593"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "-44"; repStart "1"; chr12 rmsk exon 73162758 73162813 3090 + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0593"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "429"; chr12 rmsk exon 73162817 73163408 2712 + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0593"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr12 rmsk exon 73163396 73163478 407 + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0593"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr12 rmsk exon 73163557 73163854 1247 + . gene_id "MER4_12q21.1a"; transcript_id "MER4_12q21.1a"; locus "MER4_12q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0593"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2119"; ### MER4_12q21.1b ### chr12 rmsk gene 73163905 73167915 . + . gene_id "MER4_12q21.1b"; transcript_id "MER4_12q21.1b"; locus "MER4_12q21.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0594"; model_cov "4148"; model_pct "62.9"; chr12 rmsk exon 73163905 73164836 5930 + . gene_id "MER4_12q21.1b"; transcript_id "MER4_12q21.1b"; locus "MER4_12q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0594"; repClass "LTR"; repEnd "1020"; repFamily "ERV1"; repLeft "-5578"; repStart "29"; chr12 rmsk exon 73164838 73165584 4935 + . gene_id "MER4_12q21.1b"; transcript_id "MER4_12q21.1b"; locus "MER4_12q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0594"; repClass "LTR"; repEnd "2619"; repFamily "ERV1"; repLeft "-3979"; repStart "1748"; chr12 rmsk exon 73165817 73166723 4935 + . gene_id "MER4_12q21.1b"; transcript_id "MER4_12q21.1b"; locus "MER4_12q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0594"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2620"; chr12 rmsk exon 73166727 73167915 6782 + . gene_id "MER4_12q21.1b"; transcript_id "MER4_12q21.1b"; locus "MER4_12q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0594"; repClass "LTR"; repEnd "5066"; repFamily "ERV1"; repLeft "-1532"; repStart "3841"; ### LTR19_12q21.1 ### chr12 rmsk gene 73169614 73170661 . + . gene_id "LTR19_12q21.1"; transcript_id "LTR19_12q21.1"; locus "LTR19_12q21.1"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0037"; model_cov "771"; model_pct "13.8"; chr12 rmsk exon 73169614 73170192 4457 + . gene_id "LTR19_12q21.1"; transcript_id "LTR19_12q21.1"; locus "LTR19_12q21.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0037"; repClass "LTR"; repEnd "4120"; repFamily "ERV1"; repLeft "-1466"; repStart "3498"; chr12 rmsk exon 73170499 73170661 4457 + . gene_id "LTR19_12q21.1"; transcript_id "LTR19_12q21.1"; locus "LTR19_12q21.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0037"; repClass "LTR"; repEnd "4270"; repFamily "ERV1"; repLeft "-1316"; repStart "4121"; ### HERVL_12q21.1a ### chr12 rmsk gene 73250847 73257054 . + . gene_id "HERVL_12q21.1a"; transcript_id "HERVL_12q21.1a"; locus "HERVL_12q21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0981"; model_cov "5169"; model_pct "91.4"; chr12 rmsk exon 73250847 73251281 2678 + . gene_id "HERVL_12q21.1a"; transcript_id "HERVL_12q21.1a"; locus "HERVL_12q21.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0981"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-19"; repStart "1"; chr12 rmsk exon 73251467 73252025 4089 + . gene_id "HERVL_12q21.1a"; transcript_id "HERVL_12q21.1a"; locus "HERVL_12q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0981"; repClass "LTR"; repEnd "560"; repFamily "ERVL"; repLeft "-5094"; repStart "1"; chr12 rmsk exon 73252021 73256601 33804 + . gene_id "HERVL_12q21.1a"; transcript_id "HERVL_12q21.1a"; locus "HERVL_12q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0981"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1044"; chr12 rmsk exon 73256602 73257054 3080 + . gene_id "HERVL_12q21.1a"; transcript_id "HERVL_12q21.1a"; locus "HERVL_12q21.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0981"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_12q21.1f ### chr12 rmsk gene 73809028 73813890 . + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2747"; model_cov "4228"; model_pct "74.6"; chr12 rmsk exon 73809028 73810255 1218 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "1653"; repFamily "ERVL"; repLeft "-4014"; repStart "411"; chr12 rmsk exon 73810479 73811251 1409 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "-2810"; repStart "2074"; chr12 rmsk exon 73811410 73811624 1409 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "3069"; repFamily "ERVL"; repLeft "-2598"; repStart "2858"; chr12 rmsk exon 73811841 73812806 1510 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1544"; repStart "3114"; chr12 rmsk exon 73812821 73813693 2217 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "5065"; repFamily "ERVL"; repLeft "-602"; repStart "4179"; chr12 rmsk exon 73813793 73813890 286 + . gene_id "ERVLE_12q21.1f"; transcript_id "ERVLE_12q21.1f"; locus "ERVLE_12q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2747"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-351"; repStart "5219"; ### HERVL_12q21.1b ### chr12 rmsk gene 73825650 73832268 . + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0982"; model_cov "5652"; model_pct "100.0"; chr12 rmsk exon 73825650 73826028 2665 + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0982"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "-57"; repStart "1"; chr12 rmsk exon 73826137 73826168 2665 + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0982"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "388"; chr12 rmsk exon 73826173 73827309 42504 + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0982"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "-4529"; repStart "1"; chr12 rmsk exon 73827640 73832153 42504 + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0982"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1126"; chr12 rmsk exon 73832158 73832268 792 + . gene_id "HERVL_12q21.1b"; transcript_id "HERVL_12q21.1b"; locus "HERVL_12q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0982"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "-329"; repStart "5"; ### ERVLE_12q21.1g ### chr12 rmsk gene 73879929 73882967 . - . gene_id "ERVLE_12q21.1g"; transcript_id "ERVLE_12q21.1g"; locus "ERVLE_12q21.1g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2748"; model_cov "938"; model_pct "16.6"; chr12 rmsk exon 73879929 73880239 461 - . gene_id "ERVLE_12q21.1g"; transcript_id "ERVLE_12q21.1g"; locus "ERVLE_12q21.1g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2748"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "7"; repStart "-312"; chr12 rmsk exon 73880635 73881026 1130 - . gene_id "ERVLE_12q21.1g"; transcript_id "ERVLE_12q21.1g"; locus "ERVLE_12q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2748"; repClass "LTR"; repEnd "5617"; repFamily "ERVL"; repLeft "5209"; repStart "-50"; chr12 rmsk exon 73882071 73882121 1983 - . gene_id "ERVLE_12q21.1g"; transcript_id "ERVLE_12q21.1g"; locus "ERVLE_12q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2748"; repClass "LTR"; repEnd "582"; repFamily "ERVL"; repLeft "534"; repStart "-5085"; chr12 rmsk exon 73882501 73882967 1983 - . gene_id "ERVLE_12q21.1g"; transcript_id "ERVLE_12q21.1g"; locus "ERVLE_12q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2748"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "51"; repStart "-5134"; ### HERVL_12q21.1c ### chr12 rmsk gene 74034877 74040505 . + . gene_id "HERVL_12q21.1c"; transcript_id "HERVL_12q21.1c"; locus "HERVL_12q21.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0984"; model_cov "4873"; model_pct "86.2"; chr12 rmsk exon 74034877 74038696 35768 + . gene_id "HERVL_12q21.1c"; transcript_id "HERVL_12q21.1c"; locus "HERVL_12q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0984"; repClass "LTR"; repEnd "4599"; repFamily "ERVL"; repLeft "-1055"; repStart "780"; chr12 rmsk exon 74038998 74040067 35768 + . gene_id "HERVL_12q21.1c"; transcript_id "HERVL_12q21.1c"; locus "HERVL_12q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0984"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4600"; chr12 rmsk exon 74040068 74040505 2922 + . gene_id "HERVL_12q21.1c"; transcript_id "HERVL_12q21.1c"; locus "HERVL_12q21.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0984"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_12q21.1d ### chr12 rmsk gene 74063872 74066600 . + . gene_id "HERVL_12q21.1d"; transcript_id "HERVL_12q21.1d"; locus "HERVL_12q21.1d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0985"; model_cov "2760"; model_pct "48.8"; chr12 rmsk exon 74063872 74066600 19877 + . gene_id "HERVL_12q21.1d"; transcript_id "HERVL_12q21.1d"; locus "HERVL_12q21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0985"; repClass "LTR"; repEnd "4263"; repFamily "ERVL"; repLeft "-1391"; repStart "1503"; ### HERVL_12q21.1e ### chr12 rmsk gene 74109996 74111135 . - . gene_id "HERVL_12q21.1e"; transcript_id "HERVL_12q21.1e"; locus "HERVL_12q21.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0986"; model_cov "709"; model_pct "12.5"; chr12 rmsk exon 74109996 74110426 2990 - . gene_id "HERVL_12q21.1e"; transcript_id "HERVL_12q21.1e"; locus "HERVL_12q21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0986"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr12 rmsk exon 74110427 74111135 5401 - . gene_id "HERVL_12q21.1e"; transcript_id "HERVL_12q21.1e"; locus "HERVL_12q21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0986"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4945"; repStart "0"; ### MER34B_12q21.1 ### chr12 rmsk gene 74223550 74223894 . + . gene_id "MER34B_12q21.1"; transcript_id "MER34B_12q21.1"; locus "MER34B_12q21.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0216"; model_cov "643"; model_pct "12.0"; chr12 rmsk exon 74223550 74223894 984 + . gene_id "MER34B_12q21.1"; transcript_id "MER34B_12q21.1"; locus "MER34B_12q21.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0216"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "-172"; repStart "4541"; ### ERVLB4_12q21.1a ### chr12 rmsk gene 74230415 74237386 . + . gene_id "ERVLB4_12q21.1a"; transcript_id "ERVLB4_12q21.1a"; locus "ERVLB4_12q21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1290"; model_cov "5351"; model_pct "93.6"; chr12 rmsk exon 74230415 74230937 2286 + . gene_id "ERVLB4_12q21.1a"; transcript_id "ERVLB4_12q21.1a"; locus "ERVLB4_12q21.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1290"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr12 rmsk exon 74231279 74235741 23131 + . gene_id "ERVLB4_12q21.1a"; transcript_id "ERVLB4_12q21.1a"; locus "ERVLB4_12q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1290"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-1269"; repStart "1"; chr12 rmsk exon 74236162 74236823 3736 + . gene_id "ERVLB4_12q21.1a"; transcript_id "ERVLB4_12q21.1a"; locus "ERVLB4_12q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1290"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "-611"; repStart "4444"; chr12 rmsk exon 74237144 74237386 3180 + . gene_id "ERVLB4_12q21.1a"; transcript_id "ERVLB4_12q21.1a"; locus "ERVLB4_12q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1290"; repClass "LTR"; repEnd "5351"; repFamily "ERVL"; repLeft "-363"; repStart "5103"; ### HERVEA_12q21.1 ### chr12 rmsk gene 74264309 74273021 . + . gene_id "HERVEA_12q21.1"; transcript_id "HERVEA_12q21.1"; locus "HERVEA_12q21.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0070"; model_cov "7846"; model_pct "100.0"; chr12 rmsk exon 74264309 74264745 3101 + . gene_id "HERVEA_12q21.1"; transcript_id "HERVEA_12q21.1"; locus "HERVEA_12q21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0070"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr12 rmsk exon 74264746 74272588 65164 + . gene_id "HERVEA_12q21.1"; transcript_id "HERVEA_12q21.1"; locus "HERVEA_12q21.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0070"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 74272589 74273021 3349 + . gene_id "HERVEA_12q21.1"; transcript_id "HERVEA_12q21.1"; locus "HERVEA_12q21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0070"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_12q21.1f ### chr12 rmsk gene 74275777 74282432 . + . gene_id "HERVL_12q21.1f"; transcript_id "HERVL_12q21.1f"; locus "HERVL_12q21.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0987"; model_cov "5655"; model_pct "100.0"; chr12 rmsk exon 74275777 74276228 2594 + . gene_id "HERVL_12q21.1f"; transcript_id "HERVL_12q21.1f"; locus "HERVL_12q21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0987"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr12 rmsk exon 74276229 74278444 16870 + . gene_id "HERVL_12q21.1f"; transcript_id "HERVL_12q21.1f"; locus "HERVL_12q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0987"; repClass "LTR"; repEnd "2207"; repFamily "ERVL"; repLeft "-3447"; repStart "1"; chr12 rmsk exon 74278503 74281949 26518 + . gene_id "HERVL_12q21.1f"; transcript_id "HERVL_12q21.1f"; locus "HERVL_12q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0987"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2205"; chr12 rmsk exon 74281950 74282432 2785 + . gene_id "HERVL_12q21.1f"; transcript_id "HERVL_12q21.1f"; locus "HERVL_12q21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0987"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-110"; ### HUERSP2_12q21.1 ### chr12 rmsk gene 74386671 74392035 . - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0096"; model_cov "2827"; model_pct "91.5"; chr12 rmsk exon 74386671 74387057 2972 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "327"; repStart "0"; chr12 rmsk exon 74387376 74387609 2972 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "293"; repFamily "ERV1"; repLeft "36"; repStart "-479"; chr12 rmsk exon 74387908 74387957 343 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "50"; repFamily "ERV1"; repLeft "1"; repStart "-722"; chr12 rmsk exon 74387961 74388171 6101 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2866"; repStart "0"; chr12 rmsk exon 74388207 74389016 13341 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "2865"; repFamily "ERV1"; repLeft "2034"; repStart "-223"; chr12 rmsk exon 74389294 74389636 13341 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "2033"; repFamily "ERV1"; repLeft "1720"; repStart "-1055"; chr12 rmsk exon 74389949 74390808 13341 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "1719"; repFamily "ERV1"; repLeft "855"; repStart "-1369"; chr12 rmsk exon 74390800 74391301 1189 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "-3404"; repFamily "ERV1"; repLeft "-4001"; repStart "-6492"; chr12 rmsk exon 74391305 74392035 4256 - . gene_id "HUERSP2_12q21.1"; transcript_id "HUERSP2_12q21.1"; locus "HUERSP2_12q21.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0096"; repClass "LTR"; repEnd "770"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_12q21.1 ### chr12 rmsk gene 74421901 74426024 . - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2095"; model_cov "2390"; model_pct "45.7"; chr12 rmsk exon 74421901 74422346 1664 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "20"; repStart "-2"; chr12 rmsk exon 74422357 74422560 552 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "5000"; repStart "-21"; chr12 rmsk exon 74422561 74422791 2497 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "2853"; repStart "-2140"; chr12 rmsk exon 74423105 74423829 2497 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "2852"; repFamily "ERVL"; repLeft "2129"; repStart "-2374"; chr12 rmsk exon 74424755 74425668 1908 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "1222"; repStart "-3114"; chr12 rmsk exon 74425715 74426024 878 - . gene_id "ERV316A3_12q21.1"; transcript_id "ERV316A3_12q21.1"; locus "ERV316A3_12q21.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2095"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "786"; repStart "-4101"; ### ERVL_12q21.1 ### chr12 rmsk gene 74618916 74620489 . + . gene_id "ERVL_12q21.1"; transcript_id "ERVL_12q21.1"; locus "ERVL_12q21.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0326"; model_cov "1228"; model_pct "21.3"; chr12 rmsk exon 74618916 74619326 2107 + . gene_id "ERVL_12q21.1"; transcript_id "ERVL_12q21.1"; locus "ERVL_12q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0326"; repClass "LTR"; repEnd "4137"; repFamily "ERVL"; repLeft "-1620"; repStart "3687"; chr12 rmsk exon 74619317 74619957 2408 + . gene_id "ERVL_12q21.1"; transcript_id "ERVL_12q21.1"; locus "ERVL_12q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0326"; repClass "LTR"; repEnd "5752"; repFamily "ERVL"; repLeft "-5"; repStart "4974"; chr12 rmsk exon 74619965 74620489 1673 + . gene_id "ERVL_12q21.1"; transcript_id "ERVL_12q21.1"; locus "ERVL_12q21.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0326"; repClass "LTR"; repEnd "522"; repFamily "ERVL"; repLeft "-32"; repStart "3"; ### ERVLE_12q21.1h ### chr12 rmsk gene 74793768 74796139 . + . gene_id "ERVLE_12q21.1h"; transcript_id "ERVLE_12q21.1h"; locus "ERVLE_12q21.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2751"; model_cov "957"; model_pct "16.9"; chr12 rmsk exon 74793768 74793858 331 + . gene_id "ERVLE_12q21.1h"; transcript_id "ERVLE_12q21.1h"; locus "ERVLE_12q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2751"; repClass "LTR"; repEnd "3335"; repFamily "ERVL"; repLeft "-2332"; repStart "3245"; chr12 rmsk exon 74795346 74795481 318 + . gene_id "ERVLE_12q21.1h"; transcript_id "ERVLE_12q21.1h"; locus "ERVLE_12q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2751"; repClass "LTR"; repEnd "4126"; repFamily "ERVL"; repLeft "-1541"; repStart "3993"; chr12 rmsk exon 74795518 74796139 855 + . gene_id "ERVLE_12q21.1h"; transcript_id "ERVLE_12q21.1h"; locus "ERVLE_12q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2751"; repClass "LTR"; repEnd "4973"; repFamily "ERVL"; repLeft "-694"; repStart "4239"; ### HERVL_12q21.1g ### chr12 rmsk gene 75012443 75015835 . + . gene_id "HERVL_12q21.1g"; transcript_id "HERVL_12q21.1g"; locus "HERVL_12q21.1g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0990"; model_cov "3026"; model_pct "53.5"; chr12 rmsk exon 75012443 75012804 2485 + . gene_id "HERVL_12q21.1g"; transcript_id "HERVL_12q21.1g"; locus "HERVL_12q21.1g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0990"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 75012805 75015538 21144 + . gene_id "HERVL_12q21.1g"; transcript_id "HERVL_12q21.1g"; locus "HERVL_12q21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0990"; repClass "LTR"; repEnd "2736"; repFamily "ERVL"; repLeft "-2918"; repStart "1"; chr12 rmsk exon 75015541 75015635 782 + . gene_id "HERVL_12q21.1g"; transcript_id "HERVL_12q21.1g"; locus "HERVL_12q21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0990"; repClass "LTR"; repEnd "3410"; repFamily "ERVL"; repLeft "-2244"; repStart "3316"; chr12 rmsk exon 75015641 75015835 1295 + . gene_id "HERVL_12q21.1g"; transcript_id "HERVL_12q21.1g"; locus "HERVL_12q21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0990"; repClass "LTR"; repEnd "5574"; repFamily "ERVL"; repLeft "-80"; repStart "5377"; ### MER61_12q21.1 ### chr12 rmsk gene 75015836 75020645 . - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0288"; model_cov "4180"; model_pct "80.1"; chr12 rmsk exon 75015836 75016167 1517 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0288"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr12 rmsk exon 75016169 75017482 6508 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0288"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3858"; repStart "0"; chr12 rmsk exon 75017566 75019605 9641 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0288"; repClass "LTR"; repEnd "4671"; repFamily "ERV1"; repLeft "2417"; repStart "-546"; chr12 rmsk exon 75019687 75019753 312 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0288"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "631"; repStart "-4517"; chr12 rmsk exon 75019830 75020343 2226 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0288"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 75020344 75020645 1499 - . gene_id "MER61_12q21.1"; transcript_id "MER61_12q21.1"; locus "MER61_12q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0288"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12q21.1b ### chr12 rmsk gene 75030969 75037864 . + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1293"; model_cov "5712"; model_pct "100.0"; chr12 rmsk exon 75030969 75031453 1808 + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1293"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr12 rmsk exon 75031457 75033228 28488 + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1293"; repClass "LTR"; repEnd "1771"; repFamily "ERVL"; repLeft "-3943"; repStart "1"; chr12 rmsk exon 75033501 75037298 28488 + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1293"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "1772"; chr12 rmsk exon 75037299 75037769 2164 + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1293"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-53"; repStart "1"; chr12 rmsk exon 75037823 75037864 235 + . gene_id "ERVLB4_12q21.1b"; transcript_id "ERVLB4_12q21.1b"; locus "ERVLB4_12q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1293"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "479"; ### MER4B_12q21.2 ### chr12 rmsk gene 75363706 75367277 . - . gene_id "MER4B_12q21.2"; transcript_id "MER4B_12q21.2"; locus "MER4B_12q21.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0339"; model_cov "2914"; model_pct "43.1"; chr12 rmsk exon 75363706 75364345 3229 - . gene_id "MER4B_12q21.2"; transcript_id "MER4B_12q21.2"; locus "MER4B_12q21.2"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0339"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "-289"; repStart "-15"; chr12 rmsk exon 75364346 75365467 5761 - . gene_id "MER4B_12q21.2"; transcript_id "MER4B_12q21.2"; locus "MER4B_12q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0339"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5705"; repStart "0"; chr12 rmsk exon 75365458 75367145 6211 - . gene_id "MER4B_12q21.2"; transcript_id "MER4B_12q21.2"; locus "MER4B_12q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0339"; repClass "LTR"; repEnd "2012"; repFamily "ERV1"; repLeft "238"; repStart "-4746"; chr12 rmsk exon 75367189 75367277 590 - . gene_id "MER4B_12q21.2"; transcript_id "MER4B_12q21.2"; locus "MER4B_12q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0339"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "198"; repStart "-6473"; ### HERVL_12q21.2a ### chr12 rmsk gene 75371001 75377839 . - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0992"; model_cov "5517"; model_pct "97.6"; chr12 rmsk exon 75371001 75371514 1529 - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0992"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-100"; repStart "-8"; chr12 rmsk exon 75371515 75371880 2412 - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0992"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5285"; repStart "0"; chr12 rmsk exon 75371879 75372006 36279 - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0992"; repClass "LTR"; repEnd "5150"; repFamily "ERVL"; repLeft "5035"; repStart "-504"; chr12 rmsk exon 75372313 75377281 36279 - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0992"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "1"; repStart "-620"; chr12 rmsk exon 75377282 75377839 1915 - . gene_id "HERVL_12q21.2a"; transcript_id "HERVL_12q21.2a"; locus "HERVL_12q21.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0992"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERV316A3_12q21.2 ### chr12 rmsk gene 75438779 75443358 . - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2096"; model_cov "2265"; model_pct "43.3"; chr12 rmsk exon 75438779 75439237 933 - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2096"; repClass "LTR"; repEnd "4125"; repFamily "ERVL"; repLeft "3661"; repStart "-1101"; chr12 rmsk exon 75439258 75440004 2297 - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2096"; repClass "LTR"; repEnd "3920"; repFamily "ERVL"; repLeft "3210"; repStart "-1306"; chr12 rmsk exon 75440000 75440056 290 - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2096"; repClass "LTR"; repEnd "2801"; repFamily "ERVL"; repLeft "2744"; repStart "-2425"; chr12 rmsk exon 75440120 75440560 1776 - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2096"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "2193"; repStart "-2594"; chr12 rmsk exon 75442768 75443358 1200 - . gene_id "ERV316A3_12q21.2"; transcript_id "ERV316A3_12q21.2"; locus "ERV316A3_12q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2096"; repClass "LTR"; repEnd "2200"; repFamily "ERVL"; repLeft "1605"; repStart "-3026"; ### HERVH_12q21.2a ### chr12 rmsk gene 76291720 76297783 . + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0955"; model_cov "5451"; model_pct "70.7"; chr12 rmsk exon 76291720 76292127 2174 + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0955"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 76292128 76292576 2080 + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0955"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr12 rmsk exon 76292637 76296935 20445 + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0955"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "1860"; chr12 rmsk exon 76296939 76297372 2901 + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0955"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr12 rmsk exon 76297373 76297783 2174 + . gene_id "HERVH_12q21.2a"; transcript_id "HERVH_12q21.2a"; locus "HERVH_12q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0955"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_12q21.2 ### chr12 rmsk gene 76501476 76504298 . + . gene_id "ERVLB4_12q21.2"; transcript_id "ERVLB4_12q21.2"; locus "ERVLB4_12q21.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1294"; model_cov "1746"; model_pct "30.6"; chr12 rmsk exon 76501476 76503145 8822 + . gene_id "ERVLB4_12q21.2"; transcript_id "ERVLB4_12q21.2"; locus "ERVLB4_12q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1294"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-50"; repStart "3961"; chr12 rmsk exon 76503843 76503899 8822 + . gene_id "ERVLB4_12q21.2"; transcript_id "ERVLB4_12q21.2"; locus "ERVLB4_12q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1294"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5670"; chr12 rmsk exon 76503900 76504298 1891 + . gene_id "ERVLB4_12q21.2"; transcript_id "ERVLB4_12q21.2"; locus "ERVLB4_12q21.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1294"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_12q21.2 ### chr12 rmsk gene 76593345 76595170 . - . gene_id "ERVLE_12q21.2"; transcript_id "ERVLE_12q21.2"; locus "ERVLE_12q21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2753"; model_cov "1576"; model_pct "27.8"; chr12 rmsk exon 76593345 76593871 2784 - . gene_id "ERVLE_12q21.2"; transcript_id "ERVLE_12q21.2"; locus "ERVLE_12q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2753"; repClass "LTR"; repEnd "5160"; repFamily "ERVL"; repLeft "4635"; repStart "-507"; chr12 rmsk exon 76594179 76595170 2784 - . gene_id "ERVLE_12q21.2"; transcript_id "ERVLE_12q21.2"; locus "ERVLE_12q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2753"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "3583"; repStart "-1033"; ### HERV30_12q21.2 ### chr12 rmsk gene 76692426 76698034 . - . gene_id "HERV30_12q21.2"; transcript_id "HERV30_12q21.2"; locus "HERV30_12q21.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0019"; model_cov "4200"; model_pct "50.9"; chr12 rmsk exon 76692426 76693131 5000 - . gene_id "HERV30_12q21.2"; transcript_id "HERV30_12q21.2"; locus "HERV30_12q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0019"; repClass "LTR"; repEnd "719"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr12 rmsk exon 76693132 76693720 3965 - . gene_id "HERV30_12q21.2"; transcript_id "HERV30_12q21.2"; locus "HERV30_12q21.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0019"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7664"; repStart "0"; chr12 rmsk exon 76693715 76697326 26227 - . gene_id "HERV30_12q21.2"; transcript_id "HERV30_12q21.2"; locus "HERV30_12q21.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0019"; repClass "LTR"; repEnd "3608"; repFamily "ERV1"; repLeft "1"; repStart "-4649"; chr12 rmsk exon 76697327 76698034 5256 - . gene_id "HERV30_12q21.2"; transcript_id "HERV30_12q21.2"; locus "HERV30_12q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0019"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_12q21.2 ### chr12 rmsk gene 76744149 76747459 . + . gene_id "ERVL_12q21.2"; transcript_id "ERVL_12q21.2"; locus "ERVL_12q21.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0327"; model_cov "1876"; model_pct "32.6"; chr12 rmsk exon 76744149 76744410 461 + . gene_id "ERVL_12q21.2"; transcript_id "ERVL_12q21.2"; locus "ERVL_12q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0327"; repClass "LTR"; repEnd "1385"; repFamily "ERVL"; repLeft "-4372"; repStart "1121"; chr12 rmsk exon 76744552 76745444 1170 + . gene_id "ERVL_12q21.2"; transcript_id "ERVL_12q21.2"; locus "ERVL_12q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0327"; repClass "LTR"; repEnd "1904"; repFamily "ERVL"; repLeft "-3853"; repStart "998"; chr12 rmsk exon 76746767 76747459 1215 + . gene_id "ERVL_12q21.2"; transcript_id "ERVL_12q21.2"; locus "ERVL_12q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0327"; repClass "LTR"; repEnd "3513"; repFamily "ERVL"; repLeft "-2244"; repStart "2807"; ### HERVP71A_12q21.2 ### chr12 rmsk gene 76803322 76804899 . + . gene_id "HERVP71A_12q21.2"; transcript_id "HERVP71A_12q21.2"; locus "HERVP71A_12q21.2"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0062"; model_cov "1132"; model_pct "14.9"; chr12 rmsk exon 76803322 76804451 8613 + . gene_id "HERVP71A_12q21.2"; transcript_id "HERVP71A_12q21.2"; locus "HERVP71A_12q21.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0062"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "6458"; chr12 rmsk exon 76804452 76804899 3306 + . gene_id "HERVP71A_12q21.2"; transcript_id "HERVP71A_12q21.2"; locus "HERVP71A_12q21.2"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0062"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_12q21.2 ### chr12 rmsk gene 77181253 77182998 . - . gene_id "MER61_12q21.2"; transcript_id "MER61_12q21.2"; locus "MER61_12q21.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0291"; model_cov "1433"; model_pct "27.5"; chr12 rmsk exon 77181253 77182239 10256 - . gene_id "MER61_12q21.2"; transcript_id "MER61_12q21.2"; locus "MER61_12q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0291"; repClass "LTR"; repEnd "4080"; repFamily "ERV1"; repLeft "3097"; repStart "-1137"; chr12 rmsk exon 77182552 77182998 10256 - . gene_id "MER61_12q21.2"; transcript_id "MER61_12q21.2"; locus "MER61_12q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0291"; repClass "LTR"; repEnd "3096"; repFamily "ERV1"; repLeft "2646"; repStart "-2121"; ### MER101_12q21.2 ### chr12 rmsk gene 77642091 77644073 . - . gene_id "MER101_12q21.2"; transcript_id "MER101_12q21.2"; locus "MER101_12q21.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0284"; model_cov "1834"; model_pct "27.6"; chr12 rmsk exon 77642091 77642682 1390 - . gene_id "MER101_12q21.2"; transcript_id "MER101_12q21.2"; locus "MER101_12q21.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0284"; repClass "LTR"; repEnd "4591"; repFamily "ERV1"; repLeft "4000"; repStart "-2048"; chr12 rmsk exon 77642743 77644073 3862 - . gene_id "MER101_12q21.2"; transcript_id "MER101_12q21.2"; locus "MER101_12q21.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0284"; repClass "LTR"; repEnd "2602"; repFamily "ERV1"; repLeft "1359"; repStart "-4037"; ### HERVL_12q21.2b ### chr12 rmsk gene 79490175 79493547 . - . gene_id "HERVL_12q21.2b"; transcript_id "HERVL_12q21.2b"; locus "HERVL_12q21.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_0993"; model_cov "3236"; model_pct "57.2"; chr12 rmsk exon 79490175 79490679 2598 - . gene_id "HERVL_12q21.2b"; transcript_id "HERVL_12q21.2b"; locus "HERVL_12q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0993"; repClass "LTR"; repEnd "5554"; repFamily "ERVL"; repLeft "5078"; repStart "-100"; chr12 rmsk exon 79490830 79493547 20140 - . gene_id "HERVL_12q21.2b"; transcript_id "HERVL_12q21.2b"; locus "HERVL_12q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0993"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "2324"; repStart "-570"; ### HERVL_12q21.2c ### chr12 rmsk gene 79497318 79500000 . - . gene_id "HERVL_12q21.2c"; transcript_id "HERVL_12q21.2c"; locus "HERVL_12q21.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0994"; model_cov "2011"; model_pct "35.6"; chr12 rmsk exon 79497318 79497401 15040 - . gene_id "HERVL_12q21.2c"; transcript_id "HERVL_12q21.2c"; locus "HERVL_12q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0994"; repClass "LTR"; repEnd "2340"; repFamily "ERVL"; repLeft "2262"; repStart "-3314"; chr12 rmsk exon 79497710 79499637 15040 - . gene_id "HERVL_12q21.2c"; transcript_id "HERVL_12q21.2c"; locus "HERVL_12q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0994"; repClass "LTR"; repEnd "2261"; repFamily "ERVL"; repLeft "328"; repStart "-3393"; chr12 rmsk exon 79499640 79500000 2714 - . gene_id "HERVL_12q21.2c"; transcript_id "HERVL_12q21.2c"; locus "HERVL_12q21.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0994"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "11"; repStart "-67"; ### HERVH_12q21.2b ### chr12 rmsk gene 79539848 79545625 . + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0957"; model_cov "4896"; model_pct "63.5"; chr12 rmsk exon 79539848 79540298 3532 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 79540301 79543266 20863 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr12 rmsk exon 79543261 79543408 832 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 79543408 79543903 3387 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr12 rmsk exon 79543906 79544567 4291 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 79544569 79544796 1339 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 79544799 79545174 2558 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr12 rmsk exon 79545175 79545625 3580 + . gene_id "HERVH_12q21.2b"; transcript_id "HERVH_12q21.2b"; locus "HERVH_12q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0957"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_12q21.31a ### chr12 rmsk gene 80173186 80174513 . - . gene_id "MER41_12q21.31a"; transcript_id "MER41_12q21.31a"; locus "MER41_12q21.31a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0402"; model_cov "767"; model_pct "12.9"; chr12 rmsk exon 80173186 80173739 3862 - . gene_id "MER41_12q21.31a"; transcript_id "MER41_12q21.31a"; locus "MER41_12q21.31a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0402"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr12 rmsk exon 80173744 80174513 5298 - . gene_id "MER41_12q21.31a"; transcript_id "MER41_12q21.31a"; locus "MER41_12q21.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0402"; repClass "LTR"; repEnd "5935"; repFamily "ERV1"; repLeft "5168"; repStart "-11"; ### HERVH_12q21.31 ### chr12 rmsk gene 80783123 80788892 . - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0958"; model_cov "5059"; model_pct "65.6"; chr12 rmsk exon 80783123 80783525 2568 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 80783526 80783894 2127 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr12 rmsk exon 80783895 80784111 1309 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 80784113 80784774 4349 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 80784777 80785279 3393 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr12 rmsk exon 80785270 80788485 19012 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr12 rmsk exon 80788488 80788892 2531 - . gene_id "HERVH_12q21.31"; transcript_id "HERVH_12q21.31"; locus "HERVH_12q21.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0958"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_12q21.31a ### chr12 rmsk gene 80993021 80995854 . + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2754"; model_cov "1843"; model_pct "32.5"; chr12 rmsk exon 80993021 80993303 983 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "2893"; repFamily "ERVL"; repLeft "-2774"; repStart "2605"; chr12 rmsk exon 80993328 80993840 2001 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "4013"; repFamily "ERVL"; repLeft "-1654"; repStart "3490"; chr12 rmsk exon 80994142 80994516 2001 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "4389"; repFamily "ERVL"; repLeft "-1278"; repStart "4014"; chr12 rmsk exon 80995179 80995300 2001 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "4511"; repFamily "ERVL"; repLeft "-1156"; repStart "4390"; chr12 rmsk exon 80995371 80995580 609 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "4988"; repFamily "ERVL"; repLeft "-679"; repStart "4753"; chr12 rmsk exon 80995595 80995854 513 + . gene_id "ERVLE_12q21.31a"; transcript_id "ERVLE_12q21.31a"; locus "ERVLE_12q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2754"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "-332"; repStart "5034"; ### MER41_12q21.31b ### chr12 rmsk gene 81209550 81210955 . - . gene_id "MER41_12q21.31b"; transcript_id "MER41_12q21.31b"; locus "MER41_12q21.31b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0404"; model_cov "787"; model_pct "13.2"; chr12 rmsk exon 81209550 81210179 4325 - . gene_id "MER41_12q21.31b"; transcript_id "MER41_12q21.31b"; locus "MER41_12q21.31b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0404"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 81210180 81210955 5215 - . gene_id "MER41_12q21.31b"; transcript_id "MER41_12q21.31b"; locus "MER41_12q21.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0404"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5159"; repStart "0"; ### HERVL_12q21.31a ### chr12 rmsk gene 81564474 81565559 . + . gene_id "HERVL_12q21.31a"; transcript_id "HERVL_12q21.31a"; locus "HERVL_12q21.31a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0995"; model_cov "832"; model_pct "14.7"; chr12 rmsk exon 81564474 81565308 6865 + . gene_id "HERVL_12q21.31a"; transcript_id "HERVL_12q21.31a"; locus "HERVL_12q21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0995"; repClass "LTR"; repEnd "869"; repFamily "ERVL"; repLeft "-4785"; repStart "37"; chr12 rmsk exon 81565309 81565559 1612 + . gene_id "HERVL_12q21.31a"; transcript_id "HERVL_12q21.31a"; locus "HERVL_12q21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0995"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "209"; ### ERVL_12q21.31a ### chr12 rmsk gene 81762708 81767744 . + . gene_id "ERVL_12q21.31a"; transcript_id "ERVL_12q21.31a"; locus "ERVL_12q21.31a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0328"; model_cov "5173"; model_pct "89.9"; chr12 rmsk exon 81762708 81767744 30492 + . gene_id "ERVL_12q21.31a"; transcript_id "ERVL_12q21.31a"; locus "ERVL_12q21.31a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0328"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "584"; ### ERV316A3_12q21.31a ### chr12 rmsk gene 81825332 81826437 . - . gene_id "ERV316A3_12q21.31a"; transcript_id "ERV316A3_12q21.31a"; locus "ERV316A3_12q21.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2097"; model_cov "773"; model_pct "14.8"; chr12 rmsk exon 81825332 81825724 2177 - . gene_id "ERV316A3_12q21.31a"; transcript_id "ERV316A3_12q21.31a"; locus "ERV316A3_12q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2097"; repClass "LTR"; repEnd "2565"; repFamily "ERVL"; repLeft "2173"; repStart "-2661"; chr12 rmsk exon 81826029 81826437 2177 - . gene_id "ERV316A3_12q21.31a"; transcript_id "ERV316A3_12q21.31a"; locus "ERV316A3_12q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2097"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1791"; repStart "-3054"; ### HERVL_12q21.31b ### chr12 rmsk gene 81890277 81895093 . + . gene_id "HERVL_12q21.31b"; transcript_id "HERVL_12q21.31b"; locus "HERVL_12q21.31b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0997"; model_cov "4431"; model_pct "78.4"; chr12 rmsk exon 81890277 81890700 2862 + . gene_id "HERVL_12q21.31b"; transcript_id "HERVL_12q21.31b"; locus "HERVL_12q21.31b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_0997"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 81890701 81895093 33256 + . gene_id "HERVL_12q21.31b"; transcript_id "HERVL_12q21.31b"; locus "HERVL_12q21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0997"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "-1222"; repStart "1"; ### HERV9_12q21.31 ### chr12 rmsk gene 81896396 81905688 . + . gene_id "HERV9_12q21.31"; transcript_id "HERV9_12q21.31"; locus "HERV9_12q21.31"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0141"; model_cov "8381"; model_pct "99.3"; chr12 rmsk exon 81896396 81896957 3609 + . gene_id "HERV9_12q21.31"; transcript_id "HERV9_12q21.31"; locus "HERV9_12q21.31"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0141"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 81896978 81905194 58060 + . gene_id "HERV9_12q21.31"; transcript_id "HERV9_12q21.31"; locus "HERV9_12q21.31"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0141"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "55"; chr12 rmsk exon 81905195 81905688 3729 + . gene_id "HERV9_12q21.31"; transcript_id "HERV9_12q21.31"; locus "HERV9_12q21.31"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0141"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_12q21.31c ### chr12 rmsk gene 81933732 81942476 . - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_0998"; model_cov "5645"; model_pct "99.8"; chr12 rmsk exon 81933732 81933800 2860 - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0998"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "388"; repStart "-2"; chr12 rmsk exon 81933842 81934207 2860 - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0998"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "2"; repStart "-57"; chr12 rmsk exon 81934209 81937790 28787 - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0998"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "2032"; repStart "-1"; chr12 rmsk exon 81940082 81942027 28787 - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0998"; repClass "LTR"; repEnd "2031"; repFamily "ERVL"; repLeft "7"; repStart "-3623"; chr12 rmsk exon 81942032 81942476 3200 - . gene_id "HERVL_12q21.31c"; transcript_id "HERVL_12q21.31c"; locus "HERVL_12q21.31c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_0998"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_12q21.31b ### chr12 rmsk gene 81996637 82000175 . + . gene_id "ERV316A3_12q21.31b"; transcript_id "ERV316A3_12q21.31b"; locus "ERV316A3_12q21.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2098"; model_cov "1062"; model_pct "20.3"; chr12 rmsk exon 81996637 81996677 748 + . gene_id "ERV316A3_12q21.31b"; transcript_id "ERV316A3_12q21.31b"; locus "ERV316A3_12q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2098"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "-1189"; repStart "3992"; chr12 rmsk exon 81997079 81997258 748 + . gene_id "ERV316A3_12q21.31b"; transcript_id "ERV316A3_12q21.31b"; locus "ERV316A3_12q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2098"; repClass "LTR"; repEnd "4215"; repFamily "ERVL"; repLeft "-1011"; repStart "4038"; chr12 rmsk exon 81999210 81999997 2572 + . gene_id "ERV316A3_12q21.31b"; transcript_id "ERV316A3_12q21.31b"; locus "ERV316A3_12q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2098"; repClass "LTR"; repEnd "5046"; repFamily "ERVL"; repLeft "-180"; repStart "4269"; chr12 rmsk exon 82000116 82000175 283 + . gene_id "ERV316A3_12q21.31b"; transcript_id "ERV316A3_12q21.31b"; locus "ERV316A3_12q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2098"; repClass "LTR"; repEnd "5209"; repFamily "ERVL"; repLeft "-17"; repStart "5146"; ### ERV316A3_12q21.31c ### chr12 rmsk gene 82005506 82009632 . + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2099"; model_cov "3561"; model_pct "68.1"; chr12 rmsk exon 82005506 82005917 893 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 82006297 82006421 503 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "289"; repFamily "ERVL"; repLeft "-4937"; repStart "164"; chr12 rmsk exon 82006433 82007118 1729 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "1232"; repFamily "ERVL"; repLeft "-3994"; repStart "503"; chr12 rmsk exon 82007161 82008651 4040 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "-2247"; repStart "1398"; chr12 rmsk exon 82008654 82009425 1600 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "4398"; repFamily "ERVL"; repLeft "-828"; repStart "3475"; chr12 rmsk exon 82009426 82009632 785 + . gene_id "ERV316A3_12q21.31c"; transcript_id "ERV316A3_12q21.31c"; locus "ERV316A3_12q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2099"; repClass "LTR"; repEnd "4947"; repFamily "ERVL"; repLeft "-279"; repStart "4744"; ### ERV316A3_12q21.31d ### chr12 rmsk gene 82115944 82118468 . - . gene_id "ERV316A3_12q21.31d"; transcript_id "ERV316A3_12q21.31d"; locus "ERV316A3_12q21.31d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2100"; model_cov "1874"; model_pct "35.9"; chr12 rmsk exon 82115944 82116340 1434 - . gene_id "ERV316A3_12q21.31d"; transcript_id "ERV316A3_12q21.31d"; locus "ERV316A3_12q21.31d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2100"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "16"; repStart "-14"; chr12 rmsk exon 82116585 82117214 1932 - . gene_id "ERV316A3_12q21.31d"; transcript_id "ERV316A3_12q21.31d"; locus "ERV316A3_12q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2100"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "4536"; repStart "-46"; chr12 rmsk exon 82117259 82117509 762 - . gene_id "ERV316A3_12q21.31d"; transcript_id "ERV316A3_12q21.31d"; locus "ERV316A3_12q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2100"; repClass "LTR"; repEnd "4467"; repFamily "ERVL"; repLeft "4197"; repStart "-759"; chr12 rmsk exon 82117532 82118468 1850 - . gene_id "ERV316A3_12q21.31d"; transcript_id "ERV316A3_12q21.31d"; locus "ERV316A3_12q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2100"; repClass "LTR"; repEnd "3922"; repFamily "ERVL"; repLeft "2962"; repStart "-1304"; ### HERVL_12q21.31d ### chr12 rmsk gene 82192080 82195317 . + . gene_id "HERVL_12q21.31d"; transcript_id "HERVL_12q21.31d"; locus "HERVL_12q21.31d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_0999"; model_cov "2339"; model_pct "41.4"; chr12 rmsk exon 82192080 82192638 2007 + . gene_id "HERVL_12q21.31d"; transcript_id "HERVL_12q21.31d"; locus "HERVL_12q21.31d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_0999"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 82192639 82192864 15393 + . gene_id "HERVL_12q21.31d"; transcript_id "HERVL_12q21.31d"; locus "HERVL_12q21.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0999"; repClass "LTR"; repEnd "226"; repFamily "ERVL"; repLeft "-5428"; repStart "1"; chr12 rmsk exon 82193214 82195317 15393 + . gene_id "HERVL_12q21.31d"; transcript_id "HERVL_12q21.31d"; locus "HERVL_12q21.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_0999"; repClass "LTR"; repEnd "2341"; repFamily "ERVL"; repLeft "-3313"; repStart "227"; ### HERVL_12q21.31e ### chr12 rmsk gene 82202875 82208540 . - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1000"; model_cov "4626"; model_pct "81.8"; chr12 rmsk exon 82202875 82203422 1887 - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1000"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr12 rmsk exon 82203423 82204370 6733 - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1000"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4704"; repStart "0"; chr12 rmsk exon 82204348 82205299 6418 - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1000"; repClass "LTR"; repEnd "4326"; repFamily "ERVL"; repLeft "3366"; repStart "-1328"; chr12 rmsk exon 82205289 82207989 18713 - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1000"; repClass "LTR"; repEnd "2717"; repFamily "ERVL"; repLeft "1"; repStart "-2937"; chr12 rmsk exon 82207990 82208540 1884 - . gene_id "HERVL_12q21.31e"; transcript_id "HERVL_12q21.31e"; locus "HERVL_12q21.31e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1000"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HERVFRD_12q21.31a ### chr12 rmsk gene 82656196 82661226 . - . gene_id "HERVFRD_12q21.31a"; transcript_id "HERVFRD_12q21.31a"; locus "HERVFRD_12q21.31a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0136"; model_cov "3056"; model_pct "42.4"; chr12 rmsk exon 82656196 82657396 5933 - . gene_id "HERVFRD_12q21.31a"; transcript_id "HERVFRD_12q21.31a"; locus "HERVFRD_12q21.31a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0136"; repClass "LTR"; repEnd "4015"; repFamily "ERV1"; repLeft "2793"; repStart "-3190"; chr12 rmsk exon 82657411 82658479 6533 - . gene_id "HERVFRD_12q21.31a"; transcript_id "HERVFRD_12q21.31a"; locus "HERVFRD_12q21.31a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0136"; repClass "LTR"; repEnd "1837"; repFamily "ERV1"; repLeft "716"; repStart "-5368"; chr12 rmsk exon 82659774 82660471 6533 - . gene_id "HERVFRD_12q21.31a"; transcript_id "HERVFRD_12q21.31a"; locus "HERVFRD_12q21.31a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0136"; repClass "LTR"; repEnd "715"; repFamily "ERV1"; repLeft "2"; repStart "-6490"; chr12 rmsk exon 82660509 82661226 4355 - . gene_id "HERVFRD_12q21.31a"; transcript_id "HERVFRD_12q21.31a"; locus "HERVFRD_12q21.31a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0136"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "-12"; ### ERVLB4_12q21.31a ### chr12 rmsk gene 83147274 83148071 . - . gene_id "ERVLB4_12q21.31a"; transcript_id "ERVLB4_12q21.31a"; locus "ERVLB4_12q21.31a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1296"; model_cov "586"; model_pct "10.3"; chr12 rmsk exon 83147274 83147492 621 - . gene_id "ERVLB4_12q21.31a"; transcript_id "ERVLB4_12q21.31a"; locus "ERVLB4_12q21.31a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1296"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "349"; repStart "0"; chr12 rmsk exon 83147493 83148071 3810 - . gene_id "ERVLB4_12q21.31a"; transcript_id "ERVLB4_12q21.31a"; locus "ERVLB4_12q21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1296"; repClass "LTR"; repEnd "4988"; repFamily "ERVL"; repLeft "4402"; repStart "-726"; ### ERV316A3_12q21.31e ### chr12 rmsk gene 83188491 83190372 . + . gene_id "ERV316A3_12q21.31e"; transcript_id "ERV316A3_12q21.31e"; locus "ERV316A3_12q21.31e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2101"; model_cov "1158"; model_pct "22.2"; chr12 rmsk exon 83188491 83189616 2269 + . gene_id "ERV316A3_12q21.31e"; transcript_id "ERV316A3_12q21.31e"; locus "ERV316A3_12q21.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2101"; repClass "LTR"; repEnd "5154"; repFamily "ERVL"; repLeft "-72"; repStart "4017"; chr12 rmsk exon 83189897 83189918 2269 + . gene_id "ERV316A3_12q21.31e"; transcript_id "ERV316A3_12q21.31e"; locus "ERV316A3_12q21.31e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2101"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "5155"; chr12 rmsk exon 83189971 83190372 1112 + . gene_id "ERV316A3_12q21.31e"; transcript_id "ERV316A3_12q21.31e"; locus "ERV316A3_12q21.31e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2101"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HERVL_12q21.31f ### chr12 rmsk gene 83281467 83283866 . - . gene_id "HERVL_12q21.31f"; transcript_id "HERVL_12q21.31f"; locus "HERVL_12q21.31f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1001"; model_cov "1959"; model_pct "34.6"; chr12 rmsk exon 83281467 83281910 3129 - . gene_id "HERVL_12q21.31f"; transcript_id "HERVL_12q21.31f"; locus "HERVL_12q21.31f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1001"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 83281911 83283866 15298 - . gene_id "HERVL_12q21.31f"; transcript_id "HERVL_12q21.31f"; locus "HERVL_12q21.31f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1001"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3695"; repStart "0"; ### ERVLB4_12q21.31b ### chr12 rmsk gene 83350981 83351673 . - . gene_id "ERVLB4_12q21.31b"; transcript_id "ERVLB4_12q21.31b"; locus "ERVLB4_12q21.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1297"; model_cov "737"; model_pct "12.9"; chr12 rmsk exon 83350981 83351673 1257 - . gene_id "ERVLB4_12q21.31b"; transcript_id "ERVLB4_12q21.31b"; locus "ERVLB4_12q21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1297"; repClass "LTR"; repEnd "5057"; repFamily "ERVL"; repLeft "4320"; repStart "-657"; ### ERVLE_12q21.31b ### chr12 rmsk gene 83351756 83354379 . - . gene_id "ERVLE_12q21.31b"; transcript_id "ERVLE_12q21.31b"; locus "ERVLE_12q21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2758"; model_cov "1344"; model_pct "23.7"; chr12 rmsk exon 83351756 83352547 1525 - . gene_id "ERVLE_12q21.31b"; transcript_id "ERVLE_12q21.31b"; locus "ERVLE_12q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2758"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "1918"; repStart "-2924"; chr12 rmsk exon 83353943 83354379 945 - . gene_id "ERVLE_12q21.31b"; transcript_id "ERVLE_12q21.31b"; locus "ERVLE_12q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2758"; repClass "LTR"; repEnd "1424"; repFamily "ERVL"; repLeft "905"; repStart "-4243"; ### HERVL_12q21.31g ### chr12 rmsk gene 83503122 83510258 . + . gene_id "HERVL_12q21.31g"; transcript_id "HERVL_12q21.31g"; locus "HERVL_12q21.31g"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1002"; model_cov "5032"; model_pct "89.0"; chr12 rmsk exon 83503122 83504300 7626 + . gene_id "HERVL_12q21.31g"; transcript_id "HERVL_12q21.31g"; locus "HERVL_12q21.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1002"; repClass "LTR"; repEnd "1722"; repFamily "ERVL"; repLeft "-3932"; repStart "514"; chr12 rmsk exon 83505374 83506267 27518 + . gene_id "HERVL_12q21.31g"; transcript_id "HERVL_12q21.31g"; locus "HERVL_12q21.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1002"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "-2992"; repStart "1716"; chr12 rmsk exon 83506558 83508690 27518 + . gene_id "HERVL_12q21.31g"; transcript_id "HERVL_12q21.31g"; locus "HERVL_12q21.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1002"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "-859"; repStart "2663"; chr12 rmsk exon 83509475 83510258 27518 + . gene_id "HERVL_12q21.31g"; transcript_id "HERVL_12q21.31g"; locus "HERVL_12q21.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1002"; repClass "LTR"; repEnd "5542"; repFamily "ERVL"; repLeft "-112"; repStart "4796"; ### HERVL_12q21.31h ### chr12 rmsk gene 83719369 83726439 . + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1003"; model_cov "5651"; model_pct "99.9"; chr12 rmsk exon 83719369 83719740 2472 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "-8"; chr12 rmsk exon 83719807 83719898 2472 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-12"; repStart "285"; chr12 rmsk exon 83719906 83721717 27605 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "1871"; repFamily "ERVL"; repLeft "-3783"; repStart "1"; chr12 rmsk exon 83721790 83725269 27605 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "5468"; repFamily "ERVL"; repLeft "-186"; repStart "1872"; chr12 rmsk exon 83725771 83725995 27605 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5469"; chr12 rmsk exon 83725996 83726439 3200 + . gene_id "HERVL_12q21.31h"; transcript_id "HERVL_12q21.31h"; locus "HERVL_12q21.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1003"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### MER61_12q21.31a ### chr12 rmsk gene 83827691 83828990 . - . gene_id "MER61_12q21.31a"; transcript_id "MER61_12q21.31a"; locus "MER61_12q21.31a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0292"; model_cov "1027"; model_pct "19.7"; chr12 rmsk exon 83827691 83827999 1867 - . gene_id "MER61_12q21.31a"; transcript_id "MER61_12q21.31a"; locus "MER61_12q21.31a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0292"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr12 rmsk exon 83828000 83828990 6099 - . gene_id "MER61_12q21.31a"; transcript_id "MER61_12q21.31a"; locus "MER61_12q21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0292"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4190"; repStart "0"; ### MER61_12q21.31b ### chr12 rmsk gene 83832645 83834929 . - . gene_id "MER61_12q21.31b"; transcript_id "MER61_12q21.31b"; locus "MER61_12q21.31b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0293"; model_cov "1975"; model_pct "37.9"; chr12 rmsk exon 83832645 83833513 13633 - . gene_id "MER61_12q21.31b"; transcript_id "MER61_12q21.31b"; locus "MER61_12q21.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0293"; repClass "LTR"; repEnd "4204"; repFamily "ERV1"; repLeft "3340"; repStart "-1013"; chr12 rmsk exon 83833816 83834929 13633 - . gene_id "MER61_12q21.31b"; transcript_id "MER61_12q21.31b"; locus "MER61_12q21.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0293"; repClass "LTR"; repEnd "3339"; repFamily "ERV1"; repLeft "2228"; repStart "-1878"; ### ERVLE_12q21.31c ### chr12 rmsk gene 83876275 83878069 . - . gene_id "ERVLE_12q21.31c"; transcript_id "ERVLE_12q21.31c"; locus "ERVLE_12q21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2760"; model_cov "1345"; model_pct "23.7"; chr12 rmsk exon 83876275 83876442 443 - . gene_id "ERVLE_12q21.31c"; transcript_id "ERVLE_12q21.31c"; locus "ERVLE_12q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2760"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "2322"; repStart "-3173"; chr12 rmsk exon 83876444 83877034 1236 - . gene_id "ERVLE_12q21.31c"; transcript_id "ERVLE_12q21.31c"; locus "ERVLE_12q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2760"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "1651"; repStart "-3404"; chr12 rmsk exon 83877311 83877552 384 - . gene_id "ERVLE_12q21.31c"; transcript_id "ERVLE_12q21.31c"; locus "ERVLE_12q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2760"; repClass "LTR"; repEnd "1450"; repFamily "ERVL"; repLeft "1200"; repStart "-4217"; chr12 rmsk exon 83877762 83878069 383 - . gene_id "ERVLE_12q21.31c"; transcript_id "ERVLE_12q21.31c"; locus "ERVLE_12q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2760"; repClass "LTR"; repEnd "582"; repFamily "ERVL"; repLeft "271"; repStart "-5085"; ### HERVK11_12q21.31 ### chr12 rmsk gene 84102186 84109415 . - . gene_id "HERVK11_12q21.31"; transcript_id "HERVK11_12q21.31"; locus "HERVK11_12q21.31"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0081"; model_cov "6173"; model_pct "77.6"; chr12 rmsk exon 84102186 84102341 1106 - . gene_id "HERVK11_12q21.31"; transcript_id "HERVK11_12q21.31"; locus "HERVK11_12q21.31"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0081"; repClass "LTR"; repEnd "7109"; repFamily "ERVK"; repLeft "6954"; repStart "-844"; chr12 rmsk exon 84102326 84106558 32751 - . gene_id "HERVK11_12q21.31"; transcript_id "HERVK11_12q21.31"; locus "HERVK11_12q21.31"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0081"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "2522"; repStart "-1188"; chr12 rmsk exon 84106564 84108322 12666 - . gene_id "HERVK11_12q21.31"; transcript_id "HERVK11_12q21.31"; locus "HERVK11_12q21.31"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0081"; repClass "LTR"; repEnd "1936"; repFamily "ERVK"; repLeft "161"; repStart "-6017"; chr12 rmsk exon 84108347 84109415 8640 - . gene_id "HERVK11_12q21.31"; transcript_id "HERVK11_12q21.31"; locus "HERVK11_12q21.31"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0081"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_12q21.31f ### chr12 rmsk gene 84118022 84119384 . + . gene_id "ERV316A3_12q21.31f"; transcript_id "ERV316A3_12q21.31f"; locus "ERV316A3_12q21.31f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2102"; model_cov "879"; model_pct "16.8"; chr12 rmsk exon 84118022 84118490 977 + . gene_id "ERV316A3_12q21.31f"; transcript_id "ERV316A3_12q21.31f"; locus "ERV316A3_12q21.31f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2102"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr12 rmsk exon 84118518 84119384 1934 + . gene_id "ERV316A3_12q21.31f"; transcript_id "ERV316A3_12q21.31f"; locus "ERV316A3_12q21.31f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2102"; repClass "LTR"; repEnd "913"; repFamily "ERVL"; repLeft "-4313"; repStart "34"; ### HERVL18_12q21.31 ### chr12 rmsk gene 84355652 84359232 . + . gene_id "HERVL18_12q21.31"; transcript_id "HERVL18_12q21.31"; locus "HERVL18_12q21.31"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0117"; model_cov "3149"; model_pct "52.1"; chr12 rmsk exon 84355652 84355964 2224 + . gene_id "HERVL18_12q21.31"; transcript_id "HERVL18_12q21.31"; locus "HERVL18_12q21.31"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0117"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "25"; chr12 rmsk exon 84355979 84358737 16628 + . gene_id "HERVL18_12q21.31"; transcript_id "HERVL18_12q21.31"; locus "HERVL18_12q21.31"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0117"; repClass "LTR"; repEnd "2757"; repFamily "ERVL"; repLeft "-3290"; repStart "9"; chr12 rmsk exon 84358727 84359129 2674 + . gene_id "HERVL18_12q21.31"; transcript_id "HERVL18_12q21.31"; locus "HERVL18_12q21.31"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0117"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5646"; chr12 rmsk exon 84359135 84359232 696 + . gene_id "HERVL18_12q21.31"; transcript_id "HERVL18_12q21.31"; locus "HERVL18_12q21.31"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0117"; repClass "LTR"; repEnd "340"; repFamily "ERVL"; repLeft "-17"; repStart "244"; ### HERVL_12q21.31i ### chr12 rmsk gene 84401804 84408177 . + . gene_id "HERVL_12q21.31i"; transcript_id "HERVL_12q21.31i"; locus "HERVL_12q21.31i"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1004"; model_cov "5650"; model_pct "99.9"; chr12 rmsk exon 84401804 84402176 2220 + . gene_id "HERVL_12q21.31i"; transcript_id "HERVL_12q21.31i"; locus "HERVL_12q21.31i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1004"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr12 rmsk exon 84402181 84407746 23430 + . gene_id "HERVL_12q21.31i"; transcript_id "HERVL_12q21.31i"; locus "HERVL_12q21.31i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1004"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4"; chr12 rmsk exon 84407747 84408177 2807 + . gene_id "HERVL_12q21.31i"; transcript_id "HERVL_12q21.31i"; locus "HERVL_12q21.31i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1004"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFRD_12q21.31b ### chr12 rmsk gene 84502043 84509596 . - . gene_id "HERVFRD_12q21.31b"; transcript_id "HERVFRD_12q21.31b"; locus "HERVFRD_12q21.31b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0137"; model_cov "5913"; model_pct "82.1"; chr12 rmsk exon 84502043 84502120 423 - . gene_id "HERVFRD_12q21.31b"; transcript_id "HERVFRD_12q21.31b"; locus "HERVFRD_12q21.31b"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0137"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "705"; repStart "0"; chr12 rmsk exon 84502401 84508601 6701 - . gene_id "HERVFRD_12q21.31b"; transcript_id "HERVFRD_12q21.31b"; locus "HERVFRD_12q21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0137"; repClass "LTR"; repEnd "5335"; repFamily "ERV1"; repLeft "-454"; repStart "-1870"; chr12 rmsk exon 84508671 84508791 411 - . gene_id "HERVFRD_12q21.31b"; transcript_id "HERVFRD_12q21.31b"; locus "HERVFRD_12q21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0137"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "1"; repStart "-7080"; chr12 rmsk exon 84508794 84509596 4169 - . gene_id "HERVFRD_12q21.31b"; transcript_id "HERVFRD_12q21.31b"; locus "HERVFRD_12q21.31b"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0137"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_12q21.31d ### chr12 rmsk gene 84566058 84570322 . - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2761"; model_cov "1129"; model_pct "19.9"; chr12 rmsk exon 84566058 84566209 392 - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2761"; repClass "LTR"; repEnd "4526"; repFamily "ERVL"; repLeft "4373"; repStart "-1141"; chr12 rmsk exon 84566900 84567484 1309 - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2761"; repClass "LTR"; repEnd "4089"; repFamily "ERVL"; repLeft "3504"; repStart "-1578"; chr12 rmsk exon 84567553 84567646 417 - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2761"; repClass "LTR"; repEnd "3406"; repFamily "ERVL"; repLeft "3312"; repStart "-2261"; chr12 rmsk exon 84569727 84569850 484 - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2761"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "1009"; repStart "-4538"; chr12 rmsk exon 84570149 84570322 484 - . gene_id "ERVLE_12q21.31d"; transcript_id "ERVLE_12q21.31d"; locus "ERVLE_12q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2761"; repClass "LTR"; repEnd "1008"; repFamily "ERVL"; repLeft "831"; repStart "-4659"; ### HERVW_12q21.31 ### chr12 rmsk gene 84793972 84798674 . + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0235"; model_cov "5524"; model_pct "64.0"; chr12 rmsk exon 84793972 84794476 3469 + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0235"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr12 rmsk exon 84794508 84798028 14407 + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0235"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "1952"; chr12 rmsk exon 84798025 84798063 302 + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0235"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr12 rmsk exon 84798054 84798346 2381 + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0235"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 84798347 84798674 2380 + . gene_id "HERVW_12q21.31"; transcript_id "HERVW_12q21.31"; locus "HERVW_12q21.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0235"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL40_12q21.31 ### chr12 rmsk gene 85145470 85148025 . - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0327"; model_cov "1397"; model_pct "25.3"; chr12 rmsk exon 85145470 85145915 1185 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr12 rmsk exon 85145918 85146059 503 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5373"; repStart "0"; chr12 rmsk exon 85146449 85146772 598 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "4762"; repFamily "ERVL"; repLeft "4430"; repStart "-768"; chr12 rmsk exon 85147069 85147188 430 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "3884"; repFamily "ERVL"; repLeft "3751"; repStart "-1646"; chr12 rmsk exon 85147226 85147338 257 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "3670"; repFamily "ERVL"; repLeft "3555"; repStart "-1860"; chr12 rmsk exon 85147369 85147556 610 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "3226"; repStart "-2103"; chr12 rmsk exon 85147572 85148025 1541 - . gene_id "HERVL40_12q21.31"; transcript_id "HERVL40_12q21.31"; locus "HERVL40_12q21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0327"; repClass "LTR"; repEnd "3060"; repFamily "ERVL"; repLeft "2601"; repStart "-2470"; ### HERVL_12q21.31j ### chr12 rmsk gene 85167243 85170415 . - . gene_id "HERVL_12q21.31j"; transcript_id "HERVL_12q21.31j"; locus "HERVL_12q21.31j"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1005"; model_cov "1306"; model_pct "23.1"; chr12 rmsk exon 85167243 85167786 2103 - . gene_id "HERVL_12q21.31j"; transcript_id "HERVL_12q21.31j"; locus "HERVL_12q21.31j"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1005"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-109"; repStart "-2"; chr12 rmsk exon 85167787 85168918 5778 - . gene_id "HERVL_12q21.31j"; transcript_id "HERVL_12q21.31j"; locus "HERVL_12q21.31j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1005"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4474"; repStart "0"; chr12 rmsk exon 85170285 85170415 863 - . gene_id "HERVL_12q21.31j"; transcript_id "HERVL_12q21.31j"; locus "HERVL_12q21.31j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1005"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "5359"; repStart "-169"; ### ERV316A3_12q21.31g ### chr12 rmsk gene 85926032 85927430 . + . gene_id "ERV316A3_12q21.31g"; transcript_id "ERV316A3_12q21.31g"; locus "ERV316A3_12q21.31g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2103"; model_cov "1363"; model_pct "26.1"; chr12 rmsk exon 85926032 85927061 1209 + . gene_id "ERV316A3_12q21.31g"; transcript_id "ERV316A3_12q21.31g"; locus "ERV316A3_12q21.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2103"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "-1904"; repStart "2295"; chr12 rmsk exon 85927112 85927430 341 + . gene_id "ERV316A3_12q21.31g"; transcript_id "ERV316A3_12q21.31g"; locus "ERV316A3_12q21.31g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2103"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-404"; repStart "4486"; ### HERVL_12q21.31k ### chr12 rmsk gene 85937013 85940309 . + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1006"; model_cov "2465"; model_pct "43.6"; chr12 rmsk exon 85937013 85937456 2896 + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1006"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 85937457 85937836 2761 + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1006"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-5274"; repStart "1"; chr12 rmsk exon 85937830 85939515 13201 + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1006"; repClass "LTR"; repEnd "4782"; repFamily "ERVL"; repLeft "-872"; repStart "3080"; chr12 rmsk exon 85939515 85939894 2792 + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1006"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5270"; chr12 rmsk exon 85939895 85940309 2705 + . gene_id "HERVL_12q21.31k"; transcript_id "HERVL_12q21.31k"; locus "HERVL_12q21.31k"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1006"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_12q21.31l ### chr12 rmsk gene 86076851 86078894 . - . gene_id "HERVL_12q21.31l"; transcript_id "HERVL_12q21.31l"; locus "HERVL_12q21.31l"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1007"; model_cov "1689"; model_pct "29.9"; chr12 rmsk exon 86076851 86077199 2658 - . gene_id "HERVL_12q21.31l"; transcript_id "HERVL_12q21.31l"; locus "HERVL_12q21.31l"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1007"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "1"; repStart "-95"; chr12 rmsk exon 86077200 86078894 12738 - . gene_id "HERVL_12q21.31l"; transcript_id "HERVL_12q21.31l"; locus "HERVL_12q21.31l"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1007"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3965"; repStart "0"; ### ERVL_12q21.31b ### chr12 rmsk gene 86117465 86118061 . + . gene_id "ERVL_12q21.31b"; transcript_id "ERVL_12q21.31b"; locus "ERVL_12q21.31b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0329"; model_cov "573"; model_pct "10.0"; chr12 rmsk exon 86117465 86118061 476 + . gene_id "ERVL_12q21.31b"; transcript_id "ERVL_12q21.31b"; locus "ERVL_12q21.31b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0329"; repClass "LTR"; repEnd "1803"; repFamily "ERVL"; repLeft "-3954"; repStart "1230"; ### ERVLB4_12q21.31c ### chr12 rmsk gene 86190676 86192672 . + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1299"; model_cov "983"; model_pct "17.2"; chr12 rmsk exon 86190676 86191083 1326 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr12 rmsk exon 86191135 86191175 1326 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "420"; chr12 rmsk exon 86191177 86191632 3123 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-5293"; repStart "2"; chr12 rmsk exon 86191675 86191751 3123 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "494"; repFamily "ERVL"; repLeft "-5220"; repStart "422"; chr12 rmsk exon 86191793 86191814 3123 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "-5201"; repStart "495"; chr12 rmsk exon 86192251 86192672 3123 + . gene_id "ERVLB4_12q21.31c"; transcript_id "ERVLB4_12q21.31c"; locus "ERVLB4_12q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1299"; repClass "LTR"; repEnd "988"; repFamily "ERVL"; repLeft "-4726"; repStart "514"; ### HERVL_12q21.32a ### chr12 rmsk gene 86561263 86568603 . + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_1008"; model_cov "5657"; model_pct "100.0"; chr12 rmsk exon 86561263 86561795 2297 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 86561796 86566138 31074 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "-1263"; repStart "1"; chr12 rmsk exon 86566139 86566569 3035 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr12 rmsk exon 86566742 86566819 401 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "367"; chr12 rmsk exon 86566820 86568068 8794 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4387"; chr12 rmsk exon 86568069 86568603 2432 + . gene_id "HERVL_12q21.32a"; transcript_id "HERVL_12q21.32a"; locus "HERVL_12q21.32a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1008"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_12q21.32a ### chr12 rmsk gene 86938682 86944755 . + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0961"; model_cov "5267"; model_pct "68.3"; chr12 rmsk exon 86938682 86939132 3532 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 86939135 86943052 26110 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "1"; chr12 rmsk exon 86943056 86943718 4318 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 86943720 86943942 1333 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "5824"; repFamily "ERV1"; repLeft "-1889"; repStart "5600"; chr12 rmsk exon 86943935 86944314 2465 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr12 rmsk exon 86944315 86944755 3316 + . gene_id "HERVH_12q21.32a"; transcript_id "HERVH_12q21.32a"; locus "HERVH_12q21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0961"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4B_12q21.32 ### chr12 rmsk gene 86995796 86996652 . + . gene_id "MER4B_12q21.32"; transcript_id "MER4B_12q21.32"; locus "MER4B_12q21.32"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0340"; model_cov "869"; model_pct "12.9"; chr12 rmsk exon 86995796 86996444 4124 + . gene_id "MER4B_12q21.32"; transcript_id "MER4B_12q21.32"; locus "MER4B_12q21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0340"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-5911"; repStart "203"; chr12 rmsk exon 86996466 86996652 1102 + . gene_id "MER4B_12q21.32"; transcript_id "MER4B_12q21.32"; locus "MER4B_12q21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0340"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "924"; ### MER4_12q21.32a ### chr12 rmsk gene 86996716 86997414 . + . gene_id "MER4_12q21.32a"; transcript_id "MER4_12q21.32a"; locus "MER4_12q21.32a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0596"; model_cov "731"; model_pct "11.1"; chr12 rmsk exon 86996716 86997414 4343 + . gene_id "MER4_12q21.32a"; transcript_id "MER4_12q21.32a"; locus "MER4_12q21.32a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0596"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; ### MER4_12q21.32b ### chr12 rmsk gene 86999949 87001329 . + . gene_id "MER4_12q21.32b"; transcript_id "MER4_12q21.32b"; locus "MER4_12q21.32b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0597"; model_cov "1445"; model_pct "21.9"; chr12 rmsk exon 86999949 87000000 284 + . gene_id "MER4_12q21.32b"; transcript_id "MER4_12q21.32b"; locus "MER4_12q21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0597"; repClass "LTR"; repEnd "2804"; repFamily "ERV1"; repLeft "-3794"; repStart "2749"; chr12 rmsk exon 87000001 87000835 3104 + . gene_id "MER4_12q21.32b"; transcript_id "MER4_12q21.32b"; locus "MER4_12q21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0597"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2805"; chr12 rmsk exon 87000835 87001329 2655 + . gene_id "MER4_12q21.32b"; transcript_id "MER4_12q21.32b"; locus "MER4_12q21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0597"; repClass "LTR"; repEnd "4351"; repFamily "ERV1"; repLeft "-2247"; repStart "3837"; ### ERV316A3_12q21.32a ### chr12 rmsk gene 87031327 87035070 . - . gene_id "ERV316A3_12q21.32a"; transcript_id "ERV316A3_12q21.32a"; locus "ERV316A3_12q21.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2104"; model_cov "2752"; model_pct "52.7"; chr12 rmsk exon 87031327 87031782 507 - . gene_id "ERV316A3_12q21.32a"; transcript_id "ERV316A3_12q21.32a"; locus "ERV316A3_12q21.32a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2104"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "25"; repStart "0"; chr12 rmsk exon 87031802 87033111 2627 - . gene_id "ERV316A3_12q21.32a"; transcript_id "ERV316A3_12q21.32a"; locus "ERV316A3_12q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2104"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3909"; repStart "0"; chr12 rmsk exon 87033220 87033744 3138 - . gene_id "ERV316A3_12q21.32a"; transcript_id "ERV316A3_12q21.32a"; locus "ERV316A3_12q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2104"; repClass "LTR"; repEnd "3722"; repFamily "ERVL"; repLeft "3168"; repStart "-1504"; chr12 rmsk exon 87034185 87035070 3138 - . gene_id "ERV316A3_12q21.32a"; transcript_id "ERV316A3_12q21.32a"; locus "ERV316A3_12q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2104"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "2286"; repStart "-2059"; ### ERVLE_12q21.32a ### chr12 rmsk gene 87036469 87037632 . + . gene_id "ERVLE_12q21.32a"; transcript_id "ERVLE_12q21.32a"; locus "ERVLE_12q21.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2764"; model_cov "767"; model_pct "13.5"; chr12 rmsk exon 87036469 87036567 295 + . gene_id "ERVLE_12q21.32a"; transcript_id "ERVLE_12q21.32a"; locus "ERVLE_12q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2764"; repClass "LTR"; repEnd "1023"; repFamily "ERVL"; repLeft "-4644"; repStart "925"; chr12 rmsk exon 87036969 87037632 1507 + . gene_id "ERVLE_12q21.32a"; transcript_id "ERVLE_12q21.32a"; locus "ERVLE_12q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2764"; repClass "LTR"; repEnd "2242"; repFamily "ERVL"; repLeft "-3425"; repStart "1573"; ### MER101_12q21.32 ### chr12 rmsk gene 87385878 87388051 . + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0285"; model_cov "1334"; model_pct "20.1"; chr12 rmsk exon 87385878 87386538 1441 + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0285"; repClass "LTR"; repEnd "2565"; repFamily "ERV1"; repLeft "-4074"; repStart "1720"; chr12 rmsk exon 87386641 87386741 1441 + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0285"; repClass "LTR"; repEnd "2656"; repFamily "ERV1"; repLeft "-3983"; repStart "2566"; chr12 rmsk exon 87386901 87387283 1717 + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0285"; repClass "LTR"; repEnd "3152"; repFamily "ERV1"; repLeft "-3487"; repStart "2753"; chr12 rmsk exon 87387354 87387491 1906 + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0285"; repClass "LTR"; repEnd "178"; repFamily "ERV1"; repLeft "-267"; repStart "40"; chr12 rmsk exon 87387803 87388051 1906 + . gene_id "MER101_12q21.32"; transcript_id "MER101_12q21.32"; locus "MER101_12q21.32"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0285"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "179"; ### ERV316A3_12q21.32b ### chr12 rmsk gene 87435450 87436637 . - . gene_id "ERV316A3_12q21.32b"; transcript_id "ERV316A3_12q21.32b"; locus "ERV316A3_12q21.32b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2105"; model_cov "1123"; model_pct "21.5"; chr12 rmsk exon 87435450 87436637 2149 - . gene_id "ERV316A3_12q21.32b"; transcript_id "ERV316A3_12q21.32b"; locus "ERV316A3_12q21.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2105"; repClass "LTR"; repEnd "2036"; repFamily "ERVL"; repLeft "913"; repStart "-3190"; ### ERVL_12q21.32 ### chr12 rmsk gene 87497973 87499996 . - . gene_id "ERVL_12q21.32"; transcript_id "ERVL_12q21.32"; locus "ERVL_12q21.32"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0331"; model_cov "1995"; model_pct "34.7"; chr12 rmsk exon 87497973 87499996 9057 - . gene_id "ERVL_12q21.32"; transcript_id "ERVL_12q21.32"; locus "ERVL_12q21.32"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0331"; repClass "LTR"; repEnd "5299"; repFamily "ERVL"; repLeft "3304"; repStart "-458"; ### ERVLB4_12q21.32a ### chr12 rmsk gene 87500003 87501311 . - . gene_id "ERVLB4_12q21.32a"; transcript_id "ERVLB4_12q21.32a"; locus "ERVLB4_12q21.32a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1300"; model_cov "828"; model_pct "14.5"; chr12 rmsk exon 87500003 87500265 1369 - . gene_id "ERVLB4_12q21.32a"; transcript_id "ERVLB4_12q21.32a"; locus "ERVLB4_12q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1300"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "2659"; repStart "-2783"; chr12 rmsk exon 87500262 87500559 1952 - . gene_id "ERVLB4_12q21.32a"; transcript_id "ERVLB4_12q21.32a"; locus "ERVLB4_12q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1300"; repClass "LTR"; repEnd "2542"; repFamily "ERVL"; repLeft "2247"; repStart "-3172"; chr12 rmsk exon 87500555 87500812 1345 - . gene_id "ERVLB4_12q21.32a"; transcript_id "ERVLB4_12q21.32a"; locus "ERVLB4_12q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1300"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "5"; repStart "-5448"; chr12 rmsk exon 87500816 87501311 2362 - . gene_id "ERVLB4_12q21.32a"; transcript_id "ERVLB4_12q21.32a"; locus "ERVLB4_12q21.32a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1300"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_12q21.32b ### chr12 rmsk gene 87604302 87606496 . - . gene_id "ERVLE_12q21.32b"; transcript_id "ERVLE_12q21.32b"; locus "ERVLE_12q21.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2765"; model_cov "1406"; model_pct "24.8"; chr12 rmsk exon 87604302 87604502 628 - . gene_id "ERVLE_12q21.32b"; transcript_id "ERVLE_12q21.32b"; locus "ERVLE_12q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2765"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "5459"; repStart "-3"; chr12 rmsk exon 87605092 87605999 2620 - . gene_id "ERVLE_12q21.32b"; transcript_id "ERVLE_12q21.32b"; locus "ERVLE_12q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2765"; repClass "LTR"; repEnd "1697"; repFamily "ERVL"; repLeft "729"; repStart "-3970"; chr12 rmsk exon 87606263 87606496 1005 - . gene_id "ERVLE_12q21.32b"; transcript_id "ERVLE_12q21.32b"; locus "ERVLE_12q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2765"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "33"; repStart "-5401"; ### ERVLB4_12q21.32b ### chr12 rmsk gene 87617220 87623269 . - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1301"; model_cov "4873"; model_pct "85.3"; chr12 rmsk exon 87617220 87617377 1276 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "366"; repStart "-37"; chr12 rmsk exon 87617520 87617734 1276 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "227"; repFamily "ERVL"; repLeft "4"; repStart "-329"; chr12 rmsk exon 87617737 87617953 1235 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5492"; repStart "0"; chr12 rmsk exon 87617961 87622492 22761 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "4652"; repFamily "ERVL"; repLeft "1"; repStart "-1062"; chr12 rmsk exon 87622493 87622595 286 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "442"; repStart "0"; chr12 rmsk exon 87623013 87623269 1133 - . gene_id "ERVLB4_12q21.32b"; transcript_id "ERVLB4_12q21.32b"; locus "ERVLB4_12q21.32b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1301"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "244"; repStart "-47"; ### HERV4_12q21.32 ### chr12 rmsk gene 87666888 87670837 . - . gene_id "HERV4_12q21.32"; transcript_id "HERV4_12q21.32"; locus "HERV4_12q21.32"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0100"; model_cov "2724"; model_pct "41.7"; chr12 rmsk exon 87666888 87669502 13478 - . gene_id "HERV4_12q21.32"; transcript_id "HERV4_12q21.32"; locus "HERV4_12q21.32"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0100"; repClass "LTR"; repEnd "3922"; repFamily "ERV1"; repLeft "1269"; repStart "-2617"; chr12 rmsk exon 87670280 87670346 414 - . gene_id "HERV4_12q21.32"; transcript_id "HERV4_12q21.32"; locus "HERV4_12q21.32"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0100"; repClass "LTR"; repEnd "73"; repFamily "ERV1"; repLeft "2"; repStart "-6466"; chr12 rmsk exon 87670358 87670837 2106 - . gene_id "HERV4_12q21.32"; transcript_id "HERV4_12q21.32"; locus "HERV4_12q21.32"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0100"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### ERV316A3_12q21.32c ### chr12 rmsk gene 87673896 87675881 . - . gene_id "ERV316A3_12q21.32c"; transcript_id "ERV316A3_12q21.32c"; locus "ERV316A3_12q21.32c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2106"; model_cov "1429"; model_pct "27.3"; chr12 rmsk exon 87673896 87674440 1342 - . gene_id "ERV316A3_12q21.32c"; transcript_id "ERV316A3_12q21.32c"; locus "ERV316A3_12q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2106"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "2767"; repStart "-1894"; chr12 rmsk exon 87674665 87674985 734 - . gene_id "ERV316A3_12q21.32c"; transcript_id "ERV316A3_12q21.32c"; locus "ERV316A3_12q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2106"; repClass "LTR"; repEnd "2483"; repFamily "ERVL"; repLeft "2159"; repStart "-2743"; chr12 rmsk exon 87675008 87675275 1187 - . gene_id "ERV316A3_12q21.32c"; transcript_id "ERV316A3_12q21.32c"; locus "ERV316A3_12q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2106"; repClass "LTR"; repEnd "1678"; repFamily "ERVL"; repLeft "1429"; repStart "-3548"; chr12 rmsk exon 87675594 87675881 1187 - . gene_id "ERV316A3_12q21.32c"; transcript_id "ERV316A3_12q21.32c"; locus "ERV316A3_12q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2106"; repClass "LTR"; repEnd "1428"; repFamily "ERVL"; repLeft "1137"; repStart "-3798"; ### HERVL74_12q21.32 ### chr12 rmsk gene 87692809 87695370 . - . gene_id "HERVL74_12q21.32"; transcript_id "HERVL74_12q21.32"; locus "HERVL74_12q21.32"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0080"; model_cov "1713"; model_pct "30.1"; chr12 rmsk exon 87692809 87693038 2069 - . gene_id "HERVL74_12q21.32"; transcript_id "HERVL74_12q21.32"; locus "HERVL74_12q21.32"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0080"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "228"; repStart "0"; chr12 rmsk exon 87693418 87693621 2069 - . gene_id "HERVL74_12q21.32"; transcript_id "HERVL74_12q21.32"; locus "HERVL74_12q21.32"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0080"; repClass "LTR"; repEnd "227"; repFamily "ERVL"; repLeft "15"; repStart "-233"; chr12 rmsk exon 87693622 87693847 653 - . gene_id "HERVL74_12q21.32"; transcript_id "HERVL74_12q21.32"; locus "HERVL74_12q21.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0080"; repClass "LTR"; repEnd "5200"; repFamily "ERVL"; repLeft "4967"; repStart "-485"; chr12 rmsk exon 87693928 87695370 7128 - . gene_id "HERVL74_12q21.32"; transcript_id "HERVL74_12q21.32"; locus "HERVL74_12q21.32"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0080"; repClass "LTR"; repEnd "2545"; repFamily "ERVL"; repLeft "1065"; repStart "-3140"; ### ERVLB4_12q21.32c ### chr12 rmsk gene 87713791 87717073 . - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1303"; model_cov "1702"; model_pct "29.8"; chr12 rmsk exon 87713791 87713835 315 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "510"; repStart "-2"; chr12 rmsk exon 87713934 87714426 1809 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "1"; repStart "-54"; chr12 rmsk exon 87714427 87714765 1859 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5353"; repStart "0"; chr12 rmsk exon 87714795 87715228 2164 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "3613"; repFamily "ERVL"; repLeft "3153"; repStart "-2101"; chr12 rmsk exon 87715227 87715473 1357 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "2919"; repFamily "ERVL"; repLeft "2671"; repStart "-2795"; chr12 rmsk exon 87716455 87717073 2945 - . gene_id "ERVLB4_12q21.32c"; transcript_id "ERVLB4_12q21.32c"; locus "ERVLB4_12q21.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1303"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "992"; repStart "-4089"; ### ERVLE_12q21.32c ### chr12 rmsk gene 87885689 87887201 . - . gene_id "ERVLE_12q21.32c"; transcript_id "ERVLE_12q21.32c"; locus "ERVLE_12q21.32c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2766"; model_cov "1057"; model_pct "18.7"; chr12 rmsk exon 87885689 87886483 3448 - . gene_id "ERVLE_12q21.32c"; transcript_id "ERVLE_12q21.32c"; locus "ERVLE_12q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2766"; repClass "LTR"; repEnd "2903"; repFamily "ERVL"; repLeft "2075"; repStart "-2764"; chr12 rmsk exon 87886485 87886711 730 - . gene_id "ERVLE_12q21.32c"; transcript_id "ERVLE_12q21.32c"; locus "ERVLE_12q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2766"; repClass "LTR"; repEnd "1541"; repFamily "ERVL"; repLeft "1312"; repStart "-4126"; chr12 rmsk exon 87886716 87887201 1161 - . gene_id "ERVLE_12q21.32c"; transcript_id "ERVLE_12q21.32c"; locus "ERVLE_12q21.32c"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2766"; repClass "LTR"; repEnd "525"; repFamily "ERVL"; repLeft "11"; repStart "-103"; ### HERVH_12q21.32b ### chr12 rmsk gene 87907290 87912900 . - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0962"; model_cov "5117"; model_pct "66.3"; chr12 rmsk exon 87907290 87907685 2441 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr12 rmsk exon 87907694 87908063 2332 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "7705"; repFamily "ERV1"; repLeft "7324"; repStart "-8"; chr12 rmsk exon 87908064 87908287 1464 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr12 rmsk exon 87908278 87908884 2892 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "5155"; repFamily "ERV1"; repLeft "4488"; repStart "-2558"; chr12 rmsk exon 87908887 87909729 5649 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr12 rmsk exon 87909709 87912486 14276 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr12 rmsk exon 87912490 87912900 2678 - . gene_id "HERVH_12q21.32b"; transcript_id "HERVH_12q21.32b"; locus "HERVH_12q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0962"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_12q21.32d ### chr12 rmsk gene 87975672 87977586 . + . gene_id "ERVLB4_12q21.32d"; transcript_id "ERVLB4_12q21.32d"; locus "ERVLB4_12q21.32d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1305"; model_cov "1283"; model_pct "22.5"; chr12 rmsk exon 87975672 87976090 1894 + . gene_id "ERVLB4_12q21.32d"; transcript_id "ERVLB4_12q21.32d"; locus "ERVLB4_12q21.32d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1305"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 87976091 87977110 3547 + . gene_id "ERVLB4_12q21.32d"; transcript_id "ERVLB4_12q21.32d"; locus "ERVLB4_12q21.32d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1305"; repClass "LTR"; repEnd "1127"; repFamily "ERVL"; repLeft "-4587"; repStart "1"; chr12 rmsk exon 87977429 87977586 2494 + . gene_id "ERVLB4_12q21.32d"; transcript_id "ERVLB4_12q21.32d"; locus "ERVLB4_12q21.32d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1305"; repClass "LTR"; repEnd "1285"; repFamily "ERVL"; repLeft "-4429"; repStart "1128"; ### HML5_12q21.32 ### chr12 rmsk gene 88179572 88184538 . - . gene_id "HML5_12q21.32"; transcript_id "HML5_12q21.32"; locus "HML5_12q21.32"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0090"; model_cov "3814"; model_pct "55.8"; chr12 rmsk exon 88179572 88180077 3788 - . gene_id "HML5_12q21.32"; transcript_id "HML5_12q21.32"; locus "HML5_12q21.32"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0090"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 88180078 88183278 22585 - . gene_id "HML5_12q21.32"; transcript_id "HML5_12q21.32"; locus "HML5_12q21.32"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0090"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2314"; repStart "-1502"; chr12 rmsk exon 88183262 88184035 5143 - . gene_id "HML5_12q21.32"; transcript_id "HML5_12q21.32"; locus "HML5_12q21.32"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0090"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "1"; repStart "-6043"; chr12 rmsk exon 88184036 88184538 3573 - . gene_id "HML5_12q21.32"; transcript_id "HML5_12q21.32"; locus "HML5_12q21.32"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0090"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_12q21.32b ### chr12 rmsk gene 88209905 88212394 . - . gene_id "HERVL_12q21.32b"; transcript_id "HERVL_12q21.32b"; locus "HERVL_12q21.32b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1009"; model_cov "1961"; model_pct "34.7"; chr12 rmsk exon 88209905 88209956 326 - . gene_id "HERVL_12q21.32b"; transcript_id "HERVL_12q21.32b"; locus "HERVL_12q21.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1009"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "402"; repStart "0"; chr12 rmsk exon 88209957 88211897 14995 - . gene_id "HERVL_12q21.32b"; transcript_id "HERVL_12q21.32b"; locus "HERVL_12q21.32b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1009"; repClass "LTR"; repEnd "1962"; repFamily "ERVL"; repLeft "1"; repStart "-3692"; chr12 rmsk exon 88211898 88211937 2917 - . gene_id "HERVL_12q21.32b"; transcript_id "HERVL_12q21.32b"; locus "HERVL_12q21.32b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1009"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "406"; repStart "0"; chr12 rmsk exon 88211974 88212394 2917 - . gene_id "HERVL_12q21.32b"; transcript_id "HERVL_12q21.32b"; locus "HERVL_12q21.32b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1009"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "1"; repStart "-39"; ### HERVH48_12q21.32 ### chr12 rmsk gene 88227290 88235601 . + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0040"; model_cov "6140"; model_pct "92.3"; chr12 rmsk exon 88227290 88227679 2656 + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0040"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 88227680 88232727 32050 + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0040"; repClass "LTR"; repEnd "5019"; repFamily "ERV1"; repLeft "-1635"; repStart "1"; chr12 rmsk exon 88232888 88233187 2074 + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0040"; repClass "LTR"; repEnd "5822"; repFamily "ERV1"; repLeft "-832"; repStart "5522"; chr12 rmsk exon 88234300 88235175 5769 + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0040"; repClass "LTR"; repEnd "6616"; repFamily "ERV1"; repLeft "-38"; repStart "5794"; chr12 rmsk exon 88235217 88235601 2609 + . gene_id "HERVH48_12q21.32"; transcript_id "HERVH48_12q21.32"; locus "HERVH48_12q21.32"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0040"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### ERVLE_12q21.32d ### chr12 rmsk gene 88264639 88266000 . + . gene_id "ERVLE_12q21.32d"; transcript_id "ERVLE_12q21.32d"; locus "ERVLE_12q21.32d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2767"; model_cov "1474"; model_pct "26.0"; chr12 rmsk exon 88264639 88266000 2217 + . gene_id "ERVLE_12q21.32d"; transcript_id "ERVLE_12q21.32d"; locus "ERVLE_12q21.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2767"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "-1472"; repStart "2721"; ### HERVH_12q21.32c ### chr12 rmsk gene 88368038 88371980 . + . gene_id "HERVH_12q21.32c"; transcript_id "HERVH_12q21.32c"; locus "HERVH_12q21.32c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0963"; model_cov "3386"; model_pct "43.9"; chr12 rmsk exon 88368038 88368474 2477 + . gene_id "HERVH_12q21.32c"; transcript_id "HERVH_12q21.32c"; locus "HERVH_12q21.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0963"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 88368477 88368577 674 + . gene_id "HERVH_12q21.32c"; transcript_id "HERVH_12q21.32c"; locus "HERVH_12q21.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0963"; repClass "LTR"; repEnd "104"; repFamily "ERV1"; repLeft "-7609"; repStart "1"; chr12 rmsk exon 88368560 88371980 14218 + . gene_id "HERVH_12q21.32c"; transcript_id "HERVH_12q21.32c"; locus "HERVH_12q21.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0963"; repClass "LTR"; repEnd "3873"; repFamily "ERV1"; repLeft "-3840"; repStart "590"; ### MER4_12q21.32c ### chr12 rmsk gene 88386264 88387344 . - . gene_id "MER4_12q21.32c"; transcript_id "MER4_12q21.32c"; locus "MER4_12q21.32c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0598"; model_cov "1054"; model_pct "16.0"; chr12 rmsk exon 88386264 88387344 3642 - . gene_id "MER4_12q21.32c"; transcript_id "MER4_12q21.32c"; locus "MER4_12q21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0598"; repClass "LTR"; repEnd "4280"; repFamily "ERV1"; repLeft "3226"; repStart "-2318"; ### LTR57_12q21.33 ### chr12 rmsk gene 88633943 88635094 . - . gene_id "LTR57_12q21.33"; transcript_id "LTR57_12q21.33"; locus "LTR57_12q21.33"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0129"; model_cov "758"; model_pct "14.2"; chr12 rmsk exon 88633943 88634342 2248 - . gene_id "LTR57_12q21.33"; transcript_id "LTR57_12q21.33"; locus "LTR57_12q21.33"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0129"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "1"; repStart "-38"; chr12 rmsk exon 88634343 88635094 4976 - . gene_id "LTR57_12q21.33"; transcript_id "LTR57_12q21.33"; locus "LTR57_12q21.33"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0129"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4585"; repStart "0"; ### ERV316A3_12q21.33a ### chr12 rmsk gene 88684549 88685659 . + . gene_id "ERV316A3_12q21.33a"; transcript_id "ERV316A3_12q21.33a"; locus "ERV316A3_12q21.33a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2107"; model_cov "558"; model_pct "10.7"; chr12 rmsk exon 88684549 88685105 1275 + . gene_id "ERV316A3_12q21.33a"; transcript_id "ERV316A3_12q21.33a"; locus "ERV316A3_12q21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2107"; repClass "LTR"; repEnd "5030"; repFamily "ERVL"; repLeft "-196"; repStart "4472"; chr12 rmsk exon 88685317 88685659 612 + . gene_id "ERV316A3_12q21.33a"; transcript_id "ERV316A3_12q21.33a"; locus "ERV316A3_12q21.33a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2107"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "22"; ### MER4_12q21.33 ### chr12 rmsk gene 88840917 88842205 . - . gene_id "MER4_12q21.33"; transcript_id "MER4_12q21.33"; locus "MER4_12q21.33"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0599"; model_cov "873"; model_pct "13.2"; chr12 rmsk exon 88840917 88841319 2616 - . gene_id "MER4_12q21.33"; transcript_id "MER4_12q21.33"; locus "MER4_12q21.33"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0599"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "55"; repStart "0"; chr12 rmsk exon 88841354 88842205 4293 - . gene_id "MER4_12q21.33"; transcript_id "MER4_12q21.33"; locus "MER4_12q21.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0599"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5723"; repStart "-2"; ### ERVLE_12q21.33 ### chr12 rmsk gene 89545405 89547174 . - . gene_id "ERVLE_12q21.33"; transcript_id "ERVLE_12q21.33"; locus "ERVLE_12q21.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2769"; model_cov "1353"; model_pct "23.9"; chr12 rmsk exon 89545405 89545583 507 - . gene_id "ERVLE_12q21.33"; transcript_id "ERVLE_12q21.33"; locus "ERVLE_12q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2769"; repClass "LTR"; repEnd "5227"; repFamily "ERVL"; repLeft "5040"; repStart "-440"; chr12 rmsk exon 89545584 89545747 282 - . gene_id "ERVLE_12q21.33"; transcript_id "ERVLE_12q21.33"; locus "ERVLE_12q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2769"; repClass "LTR"; repEnd "5039"; repFamily "ERVL"; repLeft "4871"; repStart "-628"; chr12 rmsk exon 89545859 89546470 2225 - . gene_id "ERVLE_12q21.33"; transcript_id "ERVLE_12q21.33"; locus "ERVLE_12q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2769"; repClass "LTR"; repEnd "4953"; repFamily "ERVL"; repLeft "4328"; repStart "-714"; chr12 rmsk exon 89546835 89547174 2225 - . gene_id "ERVLE_12q21.33"; transcript_id "ERVLE_12q21.33"; locus "ERVLE_12q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2769"; repClass "LTR"; repEnd "4021"; repFamily "ERVL"; repLeft "3648"; repStart "-1646"; ### ERVLB4_12q21.33a ### chr12 rmsk gene 89767496 89773655 . - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1307"; model_cov "4824"; model_pct "84.4"; chr12 rmsk exon 89767496 89767973 1905 - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1307"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 89767974 89769143 7452 - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1307"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4549"; repStart "0"; chr12 rmsk exon 89769142 89771604 22167 - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1307"; repClass "LTR"; repEnd "3662"; repFamily "ERVL"; repLeft "1244"; repStart "-2052"; chr12 rmsk exon 89771700 89772893 22167 - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1307"; repClass "LTR"; repEnd "1243"; repFamily "ERVL"; repLeft "2"; repStart "-4471"; chr12 rmsk exon 89773270 89773655 1235 - . gene_id "ERVLB4_12q21.33a"; transcript_id "ERVLB4_12q21.33a"; locus "ERVLB4_12q21.33a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1307"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "144"; repStart "-54"; ### ERV316A3_12q21.33b ### chr12 rmsk gene 90224412 90225221 . + . gene_id "ERV316A3_12q21.33b"; transcript_id "ERV316A3_12q21.33b"; locus "ERV316A3_12q21.33b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2109"; model_cov "535"; model_pct "10.2"; chr12 rmsk exon 90224412 90224936 1680 + . gene_id "ERV316A3_12q21.33b"; transcript_id "ERV316A3_12q21.33b"; locus "ERV316A3_12q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2109"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4531"; chr12 rmsk exon 90225057 90225221 473 + . gene_id "ERV316A3_12q21.33b"; transcript_id "ERV316A3_12q21.33b"; locus "ERV316A3_12q21.33b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2109"; repClass "LTR"; repEnd "165"; repFamily "ERVL"; repLeft "-286"; repStart "1"; ### ERV316A3_12q21.33c ### chr12 rmsk gene 90278138 90284377 . - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2110"; model_cov "2864"; model_pct "54.8"; chr12 rmsk exon 90278138 90278611 1053 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-57"; repStart "0"; chr12 rmsk exon 90278654 90279799 3248 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "5167"; repFamily "ERVL"; repLeft "3941"; repStart "-59"; chr12 rmsk exon 90279931 90280405 790 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "3741"; repFamily "ERVL"; repLeft "3201"; repStart "-1485"; chr12 rmsk exon 90280405 90280694 1984 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "2764"; repStart "-2168"; chr12 rmsk exon 90282993 90283424 1984 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "2355"; repStart "-2463"; chr12 rmsk exon 90283987 90284377 1136 - . gene_id "ERV316A3_12q21.33c"; transcript_id "ERV316A3_12q21.33c"; locus "ERV316A3_12q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2110"; repClass "LTR"; repEnd "2501"; repFamily "ERVL"; repLeft "2105"; repStart "-2725"; ### ERV316A3_12q21.33d ### chr12 rmsk gene 90313121 90315093 . + . gene_id "ERV316A3_12q21.33d"; transcript_id "ERV316A3_12q21.33d"; locus "ERV316A3_12q21.33d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2111"; model_cov "1676"; model_pct "32.1"; chr12 rmsk exon 90313121 90314259 2828 + . gene_id "ERV316A3_12q21.33d"; transcript_id "ERV316A3_12q21.33d"; locus "ERV316A3_12q21.33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2111"; repClass "LTR"; repEnd "4410"; repFamily "ERVL"; repLeft "-816"; repStart "3065"; chr12 rmsk exon 90314418 90314737 974 + . gene_id "ERV316A3_12q21.33d"; transcript_id "ERV316A3_12q21.33d"; locus "ERV316A3_12q21.33d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2111"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4894"; chr12 rmsk exon 90314774 90315093 1070 + . gene_id "ERV316A3_12q21.33d"; transcript_id "ERV316A3_12q21.33d"; locus "ERV316A3_12q21.33d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2111"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-65"; repStart "62"; ### HERVL_12q21.33a ### chr12 rmsk gene 90434294 90436409 . + . gene_id "HERVL_12q21.33a"; transcript_id "HERVL_12q21.33a"; locus "HERVL_12q21.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1010"; model_cov "1746"; model_pct "30.9"; chr12 rmsk exon 90434294 90434750 3275 + . gene_id "HERVL_12q21.33a"; transcript_id "HERVL_12q21.33a"; locus "HERVL_12q21.33a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1010"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "6"; chr12 rmsk exon 90434751 90436409 7371 + . gene_id "HERVL_12q21.33a"; transcript_id "HERVL_12q21.33a"; locus "HERVL_12q21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1010"; repClass "LTR"; repEnd "1747"; repFamily "ERVL"; repLeft "-3907"; repStart "1"; ### HERVL_12q21.33b ### chr12 rmsk gene 90874461 90881175 . + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1011"; model_cov "5651"; model_pct "99.9"; chr12 rmsk exon 90874461 90874823 2739 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr12 rmsk exon 90874859 90874883 2739 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "-57"; repStart "386"; chr12 rmsk exon 90874917 90874971 2739 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "388"; chr12 rmsk exon 90874972 90880219 42536 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "5323"; repFamily "ERVL"; repLeft "-331"; repStart "1"; chr12 rmsk exon 90880264 90880592 42536 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5324"; chr12 rmsk exon 90880593 90880979 2831 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr12 rmsk exon 90881095 90881175 378 + . gene_id "HERVL_12q21.33b"; transcript_id "HERVL_12q21.33b"; locus "HERVL_12q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1011"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "372"; ### ERV316A3_12q21.33e ### chr12 rmsk gene 90901892 90906167 . - . gene_id "ERV316A3_12q21.33e"; transcript_id "ERV316A3_12q21.33e"; locus "ERV316A3_12q21.33e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2112"; model_cov "3872"; model_pct "74.1"; chr12 rmsk exon 90901892 90903338 3671 - . gene_id "ERV316A3_12q21.33e"; transcript_id "ERV316A3_12q21.33e"; locus "ERV316A3_12q21.33e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2112"; repClass "LTR"; repEnd "4425"; repFamily "ERVL"; repLeft "2966"; repStart "-801"; chr12 rmsk exon 90903399 90904441 1263 - . gene_id "ERV316A3_12q21.33e"; transcript_id "ERV316A3_12q21.33e"; locus "ERV316A3_12q21.33e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2112"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "1621"; repStart "-2510"; chr12 rmsk exon 90904472 90905776 2362 - . gene_id "ERV316A3_12q21.33e"; transcript_id "ERV316A3_12q21.33e"; locus "ERV316A3_12q21.33e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2112"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "235"; repStart "-3673"; chr12 rmsk exon 90905789 90906167 1204 - . gene_id "ERV316A3_12q21.33e"; transcript_id "ERV316A3_12q21.33e"; locus "ERV316A3_12q21.33e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2112"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "43"; repStart "-8"; ### HERV9_12q21.33 ### chr12 rmsk gene 90983302 90986518 . + . gene_id "HERV9_12q21.33"; transcript_id "HERV9_12q21.33"; locus "HERV9_12q21.33"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0143"; model_cov "4109"; model_pct "48.7"; chr12 rmsk exon 90983302 90986518 11542 + . gene_id "HERV9_12q21.33"; transcript_id "HERV9_12q21.33"; locus "HERV9_12q21.33"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0143"; repClass "LTR"; repEnd "3948"; repFamily "ERV1"; repLeft "-4488"; repStart "-161"; ### ERVLB4_12q21.33b ### chr12 rmsk gene 91065210 91067201 . - . gene_id "ERVLB4_12q21.33b"; transcript_id "ERVLB4_12q21.33b"; locus "ERVLB4_12q21.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1311"; model_cov "1539"; model_pct "26.9"; chr12 rmsk exon 91065210 91065365 286 - . gene_id "ERVLB4_12q21.33b"; transcript_id "ERVLB4_12q21.33b"; locus "ERVLB4_12q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1311"; repClass "LTR"; repEnd "2934"; repFamily "ERVL"; repLeft "2777"; repStart "-2780"; chr12 rmsk exon 91065436 91065995 1123 - . gene_id "ERVLB4_12q21.33b"; transcript_id "ERVLB4_12q21.33b"; locus "ERVLB4_12q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1311"; repClass "LTR"; repEnd "2675"; repFamily "ERVL"; repLeft "2102"; repStart "-3039"; chr12 rmsk exon 91066224 91066581 375 - . gene_id "ERVLB4_12q21.33b"; transcript_id "ERVLB4_12q21.33b"; locus "ERVLB4_12q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1311"; repClass "LTR"; repEnd "1774"; repFamily "ERVL"; repLeft "1301"; repStart "-3940"; chr12 rmsk exon 91066937 91067201 375 - . gene_id "ERVLB4_12q21.33b"; transcript_id "ERVLB4_12q21.33b"; locus "ERVLB4_12q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1311"; repClass "LTR"; repEnd "1390"; repFamily "ERVL"; repLeft "1054"; repStart "-4324"; ### ERV316A3_12q21.33f ### chr12 rmsk gene 91259110 91263274 . - . gene_id "ERV316A3_12q21.33f"; transcript_id "ERV316A3_12q21.33f"; locus "ERV316A3_12q21.33f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2113"; model_cov "3109"; model_pct "59.5"; chr12 rmsk exon 91259110 91259493 734 - . gene_id "ERV316A3_12q21.33f"; transcript_id "ERV316A3_12q21.33f"; locus "ERV316A3_12q21.33f"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2113"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "44"; repStart "0"; chr12 rmsk exon 91259591 91260057 1808 - . gene_id "ERV316A3_12q21.33f"; transcript_id "ERV316A3_12q21.33f"; locus "ERV316A3_12q21.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2113"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "4628"; repStart "-122"; chr12 rmsk exon 91260612 91261565 2478 - . gene_id "ERV316A3_12q21.33f"; transcript_id "ERV316A3_12q21.33f"; locus "ERV316A3_12q21.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2113"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "3678"; repStart "-592"; chr12 rmsk exon 91261580 91263274 4277 - . gene_id "ERV316A3_12q21.33f"; transcript_id "ERV316A3_12q21.33f"; locus "ERV316A3_12q21.33f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2113"; repClass "LTR"; repEnd "3494"; repFamily "ERVL"; repLeft "1817"; repStart "-1732"; ### ERV316A3_12q21.33g ### chr12 rmsk gene 91392804 91394556 . - . gene_id "ERV316A3_12q21.33g"; transcript_id "ERV316A3_12q21.33g"; locus "ERV316A3_12q21.33g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2114"; model_cov "1331"; model_pct "25.5"; chr12 rmsk exon 91392804 91393673 2512 - . gene_id "ERV316A3_12q21.33g"; transcript_id "ERV316A3_12q21.33g"; locus "ERV316A3_12q21.33g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2114"; repClass "LTR"; repEnd "4444"; repFamily "ERVL"; repLeft "3579"; repStart "-782"; chr12 rmsk exon 91394089 91394443 2512 - . gene_id "ERV316A3_12q21.33g"; transcript_id "ERV316A3_12q21.33g"; locus "ERV316A3_12q21.33g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2114"; repClass "LTR"; repEnd "3578"; repFamily "ERVL"; repLeft "3220"; repStart "-1648"; chr12 rmsk exon 91394446 91394556 284 - . gene_id "ERV316A3_12q21.33g"; transcript_id "ERV316A3_12q21.33g"; locus "ERV316A3_12q21.33g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2114"; repClass "LTR"; repEnd "2890"; repFamily "ERVL"; repLeft "2782"; repStart "-2336"; ### ERV316A3_12q21.33h ### chr12 rmsk gene 91396327 91399827 . - . gene_id "ERV316A3_12q21.33h"; transcript_id "ERV316A3_12q21.33h"; locus "ERV316A3_12q21.33h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2115"; model_cov "1997"; model_pct "38.2"; chr12 rmsk exon 91396327 91397000 1851 - . gene_id "ERV316A3_12q21.33h"; transcript_id "ERV316A3_12q21.33h"; locus "ERV316A3_12q21.33h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2115"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "2388"; repStart "-2143"; chr12 rmsk exon 91397055 91397528 1059 - . gene_id "ERV316A3_12q21.33h"; transcript_id "ERV316A3_12q21.33h"; locus "ERV316A3_12q21.33h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2115"; repClass "LTR"; repEnd "1440"; repFamily "ERVL"; repLeft "965"; repStart "-3786"; chr12 rmsk exon 91398446 91399267 1853 - . gene_id "ERV316A3_12q21.33h"; transcript_id "ERV316A3_12q21.33h"; locus "ERV316A3_12q21.33h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2115"; repClass "LTR"; repEnd "903"; repFamily "ERVL"; repLeft "76"; repStart "-4323"; chr12 rmsk exon 91399365 91399827 913 - . gene_id "ERV316A3_12q21.33h"; transcript_id "ERV316A3_12q21.33h"; locus "ERV316A3_12q21.33h"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2115"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "4"; repStart "-2"; ### ERV316A3_12q21.33i ### chr12 rmsk gene 91404424 91409267 . + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2116"; model_cov "3056"; model_pct "58.5"; chr12 rmsk exon 91404424 91405976 5800 + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2116"; repClass "LTR"; repEnd "2471"; repFamily "ERVL"; repLeft "-2755"; repStart "893"; chr12 rmsk exon 91406408 91407028 5800 + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2116"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2472"; chr12 rmsk exon 91407628 91408188 1286 + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2116"; repClass "LTR"; repEnd "3317"; repFamily "ERVL"; repLeft "-1909"; repStart "2741"; chr12 rmsk exon 91408520 91408808 501 + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2116"; repClass "LTR"; repEnd "4061"; repFamily "ERVL"; repLeft "-1165"; repStart "3772"; chr12 rmsk exon 91409177 91409267 252 + . gene_id "ERV316A3_12q21.33i"; transcript_id "ERV316A3_12q21.33i"; locus "ERV316A3_12q21.33i"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2116"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-298"; repStart "24"; ### ERV316A3_12q21.33j ### chr12 rmsk gene 91562503 91563645 . - . gene_id "ERV316A3_12q21.33j"; transcript_id "ERV316A3_12q21.33j"; locus "ERV316A3_12q21.33j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2118"; model_cov "1087"; model_pct "20.8"; chr12 rmsk exon 91562503 91562827 939 - . gene_id "ERV316A3_12q21.33j"; transcript_id "ERV316A3_12q21.33j"; locus "ERV316A3_12q21.33j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2118"; repClass "LTR"; repEnd "4130"; repFamily "ERVL"; repLeft "3808"; repStart "-1096"; chr12 rmsk exon 91562897 91563645 1039 - . gene_id "ERV316A3_12q21.33j"; transcript_id "ERV316A3_12q21.33j"; locus "ERV316A3_12q21.33j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2118"; repClass "LTR"; repEnd "3707"; repFamily "ERVL"; repLeft "2942"; repStart "-1519"; ### ERV316A3_12q21.33k ### chr12 rmsk gene 91927995 91929602 . + . gene_id "ERV316A3_12q21.33k"; transcript_id "ERV316A3_12q21.33k"; locus "ERV316A3_12q21.33k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2119"; model_cov "1544"; model_pct "29.5"; chr12 rmsk exon 91927995 91928130 255 + . gene_id "ERV316A3_12q21.33k"; transcript_id "ERV316A3_12q21.33k"; locus "ERV316A3_12q21.33k"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2119"; repClass "LTR"; repEnd "173"; repFamily "ERVL"; repLeft "-278"; repStart "1"; chr12 rmsk exon 91928137 91929602 3042 + . gene_id "ERV316A3_12q21.33k"; transcript_id "ERV316A3_12q21.33k"; locus "ERV316A3_12q21.33k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2119"; repClass "LTR"; repEnd "4384"; repFamily "ERVL"; repLeft "-842"; repStart "2840"; ### HERV9_12q22a ### chr12 rmsk gene 92386713 92394200 . + . gene_id "HERV9_12q22a"; transcript_id "HERV9_12q22a"; locus "HERV9_12q22a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0144"; model_cov "6693"; model_pct "79.3"; chr12 rmsk exon 92386713 92387163 3167 + . gene_id "HERV9_12q22a"; transcript_id "HERV9_12q22a"; locus "HERV9_12q22a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0144"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 92387186 92392560 34674 + . gene_id "HERV9_12q22a"; transcript_id "HERV9_12q22a"; locus "HERV9_12q22a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0144"; repClass "LTR"; repEnd "5540"; repFamily "ERV1"; repLeft "-2896"; repStart "31"; chr12 rmsk exon 92392562 92393746 9715 + . gene_id "HERV9_12q22a"; transcript_id "HERV9_12q22a"; locus "HERV9_12q22a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0144"; repClass "LTR"; repEnd "8432"; repFamily "ERV1"; repLeft "-4"; repStart "7248"; chr12 rmsk exon 92393751 92394200 3432 + . gene_id "HERV9_12q22a"; transcript_id "HERV9_12q22a"; locus "HERV9_12q22a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0144"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERVLB4_12q22a ### chr12 rmsk gene 92617232 92619495 . + . gene_id "ERVLB4_12q22a"; transcript_id "ERVLB4_12q22a"; locus "ERVLB4_12q22a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1313"; model_cov "1888"; model_pct "33.0"; chr12 rmsk exon 92617232 92617272 3799 + . gene_id "ERVLB4_12q22a"; transcript_id "ERVLB4_12q22a"; locus "ERVLB4_12q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1313"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "-2709"; repStart "2976"; chr12 rmsk exon 92617578 92618223 3799 + . gene_id "ERVLB4_12q22a"; transcript_id "ERVLB4_12q22a"; locus "ERVLB4_12q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1313"; repClass "LTR"; repEnd "3665"; repFamily "ERVL"; repLeft "-2049"; repStart "3006"; chr12 rmsk exon 92618317 92619495 6806 + . gene_id "ERVLB4_12q22a"; transcript_id "ERVLB4_12q22a"; locus "ERVLB4_12q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1313"; repClass "LTR"; repEnd "4868"; repFamily "ERVL"; repLeft "-846"; repStart "3668"; ### HML6_12q22 ### chr12 rmsk gene 92619913 92622155 . - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0064"; model_cov "861"; model_pct "12.0"; chr12 rmsk exon 92619913 92620347 3069 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "451"; repFamily "ERVK"; repLeft "1"; repStart "-48"; chr12 rmsk exon 92620501 92620951 2360 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "1818"; repStart "-4934"; chr12 rmsk exon 92620944 92621034 553 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "1376"; repFamily "ERVK"; repLeft "1285"; repStart "-5826"; chr12 rmsk exon 92621029 92621132 459 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "539"; repStart "-6563"; chr12 rmsk exon 92621192 92621416 596 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "12"; repStart "-6970"; chr12 rmsk exon 92621706 92622155 3293 - . gene_id "HML6_12q22"; transcript_id "HML6_12q22"; locus "HML6_12q22"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0064"; repClass "LTR"; repEnd "446"; repFamily "ERVK"; repLeft "1"; repStart "-53"; ### ERVL_12q22a ### chr12 rmsk gene 92709936 92713069 . - . gene_id "ERVL_12q22a"; transcript_id "ERVL_12q22a"; locus "ERVL_12q22a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0333"; model_cov "3158"; model_pct "54.9"; chr12 rmsk exon 92709936 92713069 30803 - . gene_id "ERVL_12q22a"; transcript_id "ERVL_12q22a"; locus "ERVL_12q22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0333"; repClass "LTR"; repEnd "5020"; repFamily "ERVL"; repLeft "1862"; repStart "-737"; ### ERVL_12q22b ### chr12 rmsk gene 92713136 92714978 . - . gene_id "ERVL_12q22b"; transcript_id "ERVL_12q22b"; locus "ERVL_12q22b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0334"; model_cov "1859"; model_pct "32.3"; chr12 rmsk exon 92713136 92714978 30803 - . gene_id "ERVL_12q22b"; transcript_id "ERVL_12q22b"; locus "ERVL_12q22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0334"; repClass "LTR"; repEnd "5020"; repFamily "ERVL"; repLeft "3161"; repStart "-737"; ### HUERSP1_12q22 ### chr12 rmsk gene 93248752 93255087 . - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0152"; model_cov "4798"; model_pct "76.6"; chr12 rmsk exon 93248752 93249361 4143 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "1"; repStart "-102"; chr12 rmsk exon 93249362 93249789 5384 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5838"; repStart "0"; chr12 rmsk exon 93250115 93250558 5384 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "5837"; repFamily "ERV1"; repLeft "5398"; repStart "-426"; chr12 rmsk exon 93250873 93253674 24233 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "3937"; repFamily "ERV1"; repLeft "1227"; repStart "-2326"; chr12 rmsk exon 93253704 93254932 24233 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "2"; repStart "-5037"; chr12 rmsk exon 93254933 93255087 1149 - . gene_id "HUERSP1_12q22"; transcript_id "HUERSP1_12q22"; locus "HUERSP1_12q22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0152"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "537"; repStart "0"; ### MER4B_12q22 ### chr12 rmsk gene 93545453 93546576 . - . gene_id "MER4B_12q22"; transcript_id "MER4B_12q22"; locus "MER4B_12q22"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0341"; model_cov "779"; model_pct "11.5"; chr12 rmsk exon 93545453 93546188 4530 - . gene_id "MER4B_12q22"; transcript_id "MER4B_12q22"; locus "MER4B_12q22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0341"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "3211"; repStart "-2828"; chr12 rmsk exon 93546492 93546576 4530 - . gene_id "MER4B_12q22"; transcript_id "MER4B_12q22"; locus "MER4B_12q22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0341"; repClass "LTR"; repEnd "3210"; repFamily "ERV1"; repLeft "3150"; repStart "-3548"; ### HML3_12q22 ### chr12 rmsk gene 94355584 94359308 . + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0176"; model_cov "2751"; model_pct "45.7"; chr12 rmsk exon 94355584 94356073 3879 + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0176"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 94356074 94356835 20108 + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0176"; repClass "LTR"; repEnd "781"; repFamily "ERVK"; repLeft "-5240"; repStart "1"; chr12 rmsk exon 94356896 94358740 20108 + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0176"; repClass "LTR"; repEnd "2676"; repFamily "ERVK"; repLeft "-3345"; repStart "782"; chr12 rmsk exon 94358738 94358816 563 + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0176"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5944"; chr12 rmsk exon 94358817 94359308 3691 + . gene_id "HML3_12q22"; transcript_id "HML3_12q22"; locus "HML3_12q22"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0176"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER101_12q22 ### chr12 rmsk gene 94414668 94415554 . + . gene_id "MER101_12q22"; transcript_id "MER101_12q22"; locus "MER101_12q22"; category "internal"; intModel "MER101-int"; locid "MER101-int_0286"; model_cov "1045"; model_pct "15.7"; chr12 rmsk exon 94414668 94415554 864 + . gene_id "MER101_12q22"; transcript_id "MER101_12q22"; locus "MER101_12q22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0286"; repClass "LTR"; repEnd "4077"; repFamily "ERV1"; repLeft "-2562"; repStart "3032"; ### ERV316A3_12q22 ### chr12 rmsk gene 94474303 94477806 . - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2120"; model_cov "2611"; model_pct "50.0"; chr12 rmsk exon 94474303 94475575 5025 - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2120"; repClass "LTR"; repEnd "5189"; repFamily "ERVL"; repLeft "3935"; repStart "-37"; chr12 rmsk exon 94475575 94476236 2392 - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2120"; repClass "LTR"; repEnd "2894"; repFamily "ERVL"; repLeft "2241"; repStart "-2332"; chr12 rmsk exon 94476280 94476897 1423 - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2120"; repClass "LTR"; repEnd "2107"; repFamily "ERVL"; repLeft "1518"; repStart "-3119"; chr12 rmsk exon 94476952 94477061 413 - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2120"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "253"; repStart "-4858"; chr12 rmsk exon 94477308 94477806 1366 - . gene_id "ERV316A3_12q22"; transcript_id "ERV316A3_12q22"; locus "ERV316A3_12q22"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2120"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLE_12q22 ### chr12 rmsk gene 94923092 94925507 . + . gene_id "ERVLE_12q22"; transcript_id "ERVLE_12q22"; locus "ERVLE_12q22"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2771"; model_cov "1603"; model_pct "28.3"; chr12 rmsk exon 94923092 94923738 927 + . gene_id "ERVLE_12q22"; transcript_id "ERVLE_12q22"; locus "ERVLE_12q22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2771"; repClass "LTR"; repEnd "817"; repFamily "ERVL"; repLeft "-4850"; repStart "130"; chr12 rmsk exon 94924659 94925507 1457 + . gene_id "ERVLE_12q22"; transcript_id "ERVLE_12q22"; locus "ERVLE_12q22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2771"; repClass "LTR"; repEnd "2197"; repFamily "ERVL"; repLeft "-3470"; repStart "1281"; ### ERVLB4_12q22b ### chr12 rmsk gene 94967996 94969412 . - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1315"; model_cov "827"; model_pct "14.5"; chr12 rmsk exon 94967996 94968024 592 - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1315"; repClass "LTR"; repEnd "4540"; repFamily "ERVL"; repLeft "4510"; repStart "-1174"; chr12 rmsk exon 94968309 94968520 592 - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1315"; repClass "LTR"; repEnd "4509"; repFamily "ERVL"; repLeft "4289"; repStart "-1205"; chr12 rmsk exon 94968713 94968879 322 - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1315"; repClass "LTR"; repEnd "3875"; repFamily "ERVL"; repLeft "3698"; repStart "-1839"; chr12 rmsk exon 94969096 94969167 287 - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1315"; repClass "LTR"; repEnd "3445"; repFamily "ERVL"; repLeft "3372"; repStart "-2269"; chr12 rmsk exon 94969161 94969412 523 - . gene_id "ERVLB4_12q22b"; transcript_id "ERVLB4_12q22b"; locus "ERVLB4_12q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1315"; repClass "LTR"; repEnd "3357"; repFamily "ERVL"; repLeft "3030"; repStart "-2357"; ### MER41_12q22 ### chr12 rmsk gene 95330733 95332133 . + . gene_id "MER41_12q22"; transcript_id "MER41_12q22"; locus "MER41_12q22"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0406"; model_cov "960"; model_pct "16.1"; chr12 rmsk exon 95330733 95331679 6401 + . gene_id "MER41_12q22"; transcript_id "MER41_12q22"; locus "MER41_12q22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0406"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4984"; chr12 rmsk exon 95331680 95332133 3155 + . gene_id "MER41_12q22"; transcript_id "MER41_12q22"; locus "MER41_12q22"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0406"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### MER4_12q22a ### chr12 rmsk gene 95388906 95390400 . + . gene_id "MER4_12q22a"; transcript_id "MER4_12q22a"; locus "MER4_12q22a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0600"; model_cov "1080"; model_pct "16.4"; chr12 rmsk exon 95388906 95389353 3175 + . gene_id "MER4_12q22a"; transcript_id "MER4_12q22a"; locus "MER4_12q22a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0600"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 95389357 95389920 3193 + . gene_id "MER4_12q22a"; transcript_id "MER4_12q22a"; locus "MER4_12q22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0600"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr12 rmsk exon 95389908 95390013 403 + . gene_id "MER4_12q22a"; transcript_id "MER4_12q22a"; locus "MER4_12q22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0600"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr12 rmsk exon 95390087 95390400 1281 + . gene_id "MER4_12q22a"; transcript_id "MER4_12q22a"; locus "MER4_12q22a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0600"; repClass "LTR"; repEnd "2434"; repFamily "ERV1"; repLeft "-4164"; repStart "2122"; ### MER4_12q22b ### chr12 rmsk gene 95390458 95393565 . + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0601"; model_cov "2752"; model_pct "41.7"; chr12 rmsk exon 95390458 95390609 1020 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "190"; repFamily "ERV1"; repLeft "-6408"; repStart "38"; chr12 rmsk exon 95390828 95391336 3419 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "181"; chr12 rmsk exon 95391359 95391654 1532 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "1034"; repFamily "ERV1"; repLeft "-5564"; repStart "626"; chr12 rmsk exon 95391631 95392320 3924 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "-3953"; repStart "1764"; chr12 rmsk exon 95392548 95392869 3924 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "3059"; repFamily "ERV1"; repLeft "-3539"; repStart "2646"; chr12 rmsk exon 95393188 95393431 3924 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "3319"; repFamily "ERV1"; repLeft "-3279"; repStart "3060"; chr12 rmsk exon 95393428 95393565 640 + . gene_id "MER4_12q22b"; transcript_id "MER4_12q22b"; locus "MER4_12q22b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0601"; repClass "LTR"; repEnd "4050"; repFamily "ERV1"; repLeft "-2548"; repStart "3916"; ### HERVKC4_12q22 ### chr12 rmsk gene 95443408 95444372 . - . gene_id "HERVKC4_12q22"; transcript_id "HERVKC4_12q22"; locus "HERVKC4_12q22"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0015"; model_cov "905"; model_pct "17.2"; chr12 rmsk exon 95443408 95444372 4951 - . gene_id "HERVKC4_12q22"; transcript_id "HERVKC4_12q22"; locus "HERVKC4_12q22"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0015"; repClass "LTR"; repEnd "3528"; repFamily "ERVK"; repLeft "2623"; repStart "-1734"; ### HML5_12q22 ### chr12 rmsk gene 95444445 95448153 . - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0091"; model_cov "2195"; model_pct "32.1"; chr12 rmsk exon 95444445 95444935 8075 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "4822"; repFamily "ERVK"; repLeft "4335"; repStart "-2015"; chr12 rmsk exon 95445489 95446169 8075 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "4334"; repFamily "ERVK"; repLeft "3655"; repStart "-2503"; chr12 rmsk exon 95446169 95446219 388 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "2495"; repStart "-4292"; chr12 rmsk exon 95446214 95446298 476 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "2825"; repStart "-3930"; chr12 rmsk exon 95446294 95446437 848 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "2327"; repStart "-4364"; chr12 rmsk exon 95446831 95447594 3906 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "754"; repFamily "ERVK"; repLeft "3"; repStart "-6083"; chr12 rmsk exon 95447682 95448153 2164 - . gene_id "HML5_12q22"; transcript_id "HML5_12q22"; locus "HML5_12q22"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0091"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV9_12q22b ### chr12 rmsk gene 95448361 95456110 . - . gene_id "HERV9_12q22b"; transcript_id "HERV9_12q22b"; locus "HERV9_12q22b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0145"; model_cov "6965"; model_pct "82.6"; chr12 rmsk exon 95448361 95448811 3464 - . gene_id "HERV9_12q22b"; transcript_id "HERV9_12q22b"; locus "HERV9_12q22b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0145"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "48"; repStart "0"; chr12 rmsk exon 95449115 95449175 3464 - . gene_id "HERV9_12q22b"; transcript_id "HERV9_12q22b"; locus "HERV9_12q22b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0145"; repClass "LTR"; repEnd "47"; repFamily "ERV1"; repLeft "1"; repStart "-472"; chr12 rmsk exon 95449176 95456110 56374 - . gene_id "HERV9_12q22b"; transcript_id "HERV9_12q22b"; locus "HERV9_12q22b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0145"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "1471"; repStart "0"; ### ERVLB4_12q22c ### chr12 rmsk gene 95590717 95592545 . + . gene_id "ERVLB4_12q22c"; transcript_id "ERVLB4_12q22c"; locus "ERVLB4_12q22c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1316"; model_cov "1601"; model_pct "28.0"; chr12 rmsk exon 95590717 95592065 8844 + . gene_id "ERVLB4_12q22c"; transcript_id "ERVLB4_12q22c"; locus "ERVLB4_12q22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1316"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "-333"; repStart "4007"; chr12 rmsk exon 95592170 95592394 1181 + . gene_id "ERVLB4_12q22c"; transcript_id "ERVLB4_12q22c"; locus "ERVLB4_12q22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1316"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5486"; chr12 rmsk exon 95592396 95592545 1002 + . gene_id "ERVLB4_12q22c"; transcript_id "ERVLB4_12q22c"; locus "ERVLB4_12q22c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1316"; repClass "LTR"; repEnd "159"; repFamily "ERVL"; repLeft "-255"; repStart "1"; ### HERVH_12q22 ### chr12 rmsk gene 95748862 95754890 . + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0964"; model_cov "5059"; model_pct "65.6"; chr12 rmsk exon 95748862 95749284 2667 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 95749285 95752709 15961 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr12 rmsk exon 95752700 95753199 3052 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr12 rmsk exon 95753202 95753862 4045 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr12 rmsk exon 95753864 95754080 1258 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 95754081 95754457 2451 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 95754458 95754890 2701 + . gene_id "HERVH_12q22"; transcript_id "HERVH_12q22"; locus "HERVH_12q22"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0964"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_12q23.1a ### chr12 rmsk gene 96482987 96483631 . + . gene_id "ERVLE_12q23.1a"; transcript_id "ERVLE_12q23.1a"; locus "ERVLE_12q23.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2772"; model_cov "637"; model_pct "11.2"; chr12 rmsk exon 96482987 96483465 725 + . gene_id "ERVLE_12q23.1a"; transcript_id "ERVLE_12q23.1a"; locus "ERVLE_12q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2772"; repClass "LTR"; repEnd "1021"; repFamily "ERVL"; repLeft "-4646"; repStart "538"; chr12 rmsk exon 96483481 96483631 375 + . gene_id "ERVLE_12q23.1a"; transcript_id "ERVLE_12q23.1a"; locus "ERVLE_12q23.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2772"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "-4456"; repStart "1057"; ### ERV316A3_12q23.1 ### chr12 rmsk gene 96595697 96596281 . - . gene_id "ERV316A3_12q23.1"; transcript_id "ERV316A3_12q23.1"; locus "ERV316A3_12q23.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2122"; model_cov "651"; model_pct "12.5"; chr12 rmsk exon 96595697 96596281 1291 - . gene_id "ERV316A3_12q23.1"; transcript_id "ERV316A3_12q23.1"; locus "ERV316A3_12q23.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2122"; repClass "LTR"; repEnd "2893"; repFamily "ERVL"; repLeft "2242"; repStart "-2333"; ### ERVLB4_12q23.1a ### chr12 rmsk gene 97293595 97296067 . - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1319"; model_cov "1374"; model_pct "24.0"; chr12 rmsk exon 97293595 97293757 500 - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1319"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "4807"; repStart "-754"; chr12 rmsk exon 97293841 97294499 1642 - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1319"; repClass "LTR"; repEnd "3940"; repFamily "ERVL"; repLeft "3279"; repStart "-1774"; chr12 rmsk exon 97294858 97294955 1642 - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1319"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "3189"; repStart "-2436"; chr12 rmsk exon 97295607 97295954 1642 - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1319"; repClass "LTR"; repEnd "3188"; repFamily "ERVL"; repLeft "2813"; repStart "-2526"; chr12 rmsk exon 97295973 97296067 322 - . gene_id "ERVLB4_12q23.1a"; transcript_id "ERVLB4_12q23.1a"; locus "ERVLB4_12q23.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1319"; repClass "LTR"; repEnd "3090"; repFamily "ERVL"; repLeft "2994"; repStart "-2624"; ### HERVL18_12q23.1 ### chr12 rmsk gene 98419580 98423971 . + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; category "unknown"; intModel "HERVL18-int"; locid "HERVL18-int_0118"; model_cov "3623"; model_pct "59.9"; chr12 rmsk exon 98419580 98419922 2732 + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0118"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 98419951 98421030 5889 + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0118"; repClass "LTR"; repEnd "1126"; repFamily "ERVL"; repLeft "-4921"; repStart "26"; chr12 rmsk exon 98421040 98421136 749 + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0118"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "-115"; repStart "133"; chr12 rmsk exon 98421137 98423628 16142 + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0118"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "3524"; chr12 rmsk exon 98423630 98423971 2547 + . gene_id "HERVL18_12q23.1"; transcript_id "HERVL18_12q23.1"; locus "HERVL18_12q23.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0118"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_12q23.1b ### chr12 rmsk gene 98588488 98590492 . + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2774"; model_cov "851"; model_pct "15.0"; chr12 rmsk exon 98588488 98588585 2082 + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2774"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "-5456"; repStart "105"; chr12 rmsk exon 98588898 98589042 2082 + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2774"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "-5280"; repStart "212"; chr12 rmsk exon 98589340 98589533 2082 + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2774"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "-5056"; repStart "388"; chr12 rmsk exon 98589839 98589991 2082 + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2774"; repClass "LTR"; repEnd "758"; repFamily "ERVL"; repLeft "-4909"; repStart "612"; chr12 rmsk exon 98590301 98590492 908 + . gene_id "ERVLE_12q23.1b"; transcript_id "ERVLE_12q23.1b"; locus "ERVLE_12q23.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2774"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5466"; ### MER34B_12q23.1 ### chr12 rmsk gene 99602253 99603053 . - . gene_id "MER34B_12q23.1"; transcript_id "MER34B_12q23.1"; locus "MER34B_12q23.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0219"; model_cov "792"; model_pct "14.8"; chr12 rmsk exon 99602253 99603053 3018 - . gene_id "MER34B_12q23.1"; transcript_id "MER34B_12q23.1"; locus "MER34B_12q23.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0219"; repClass "LTR"; repEnd "5198"; repFamily "ERV1"; repLeft "4406"; repStart "-158"; ### HERVH_12q23.1 ### chr12 rmsk gene 99715182 99721737 . + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0965"; model_cov "5612"; model_pct "72.8"; chr12 rmsk exon 99715182 99715589 2827 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 99715592 99717899 20218 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "2302"; repFamily "ERV1"; repLeft "-5411"; repStart "1"; chr12 rmsk exon 99718200 99718897 20218 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "2303"; chr12 rmsk exon 99718895 99719044 862 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr12 rmsk exon 99719035 99720736 7727 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4551"; chr12 rmsk exon 99720738 99720952 1362 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr12 rmsk exon 99720953 99721326 2321 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr12 rmsk exon 99721328 99721737 2915 + . gene_id "HERVH_12q23.1"; transcript_id "HERVH_12q23.1"; locus "HERVH_12q23.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0965"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### ERVLB4_12q23.1b ### chr12 rmsk gene 99915516 99916702 . + . gene_id "ERVLB4_12q23.1b"; transcript_id "ERVLB4_12q23.1b"; locus "ERVLB4_12q23.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1320"; model_cov "757"; model_pct "13.2"; chr12 rmsk exon 99915516 99915706 416 + . gene_id "ERVLB4_12q23.1b"; transcript_id "ERVLB4_12q23.1b"; locus "ERVLB4_12q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1320"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "-4089"; repStart "1438"; chr12 rmsk exon 99916144 99916702 1450 + . gene_id "ERVLB4_12q23.1b"; transcript_id "ERVLB4_12q23.1b"; locus "ERVLB4_12q23.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1320"; repClass "LTR"; repEnd "2310"; repFamily "ERVL"; repLeft "-3404"; repStart "1740"; ### ERVLE_12q23.1c ### chr12 rmsk gene 99916729 99918296 . + . gene_id "ERVLE_12q23.1c"; transcript_id "ERVLE_12q23.1c"; locus "ERVLE_12q23.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2775"; model_cov "953"; model_pct "16.8"; chr12 rmsk exon 99916729 99916812 1583 + . gene_id "ERVLE_12q23.1c"; transcript_id "ERVLE_12q23.1c"; locus "ERVLE_12q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2775"; repClass "LTR"; repEnd "3659"; repFamily "ERVL"; repLeft "-2008"; repStart "3577"; chr12 rmsk exon 99917038 99917648 1583 + . gene_id "ERVLE_12q23.1c"; transcript_id "ERVLE_12q23.1c"; locus "ERVLE_12q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2775"; repClass "LTR"; repEnd "4331"; repFamily "ERVL"; repLeft "-1336"; repStart "3660"; chr12 rmsk exon 99918158 99918296 270 + . gene_id "ERVLE_12q23.1c"; transcript_id "ERVLE_12q23.1c"; locus "ERVLE_12q23.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2775"; repClass "LTR"; repEnd "4772"; repFamily "ERVL"; repLeft "-895"; repStart "4572"; ### HML5_12q23.1 ### chr12 rmsk gene 100159365 100165461 . - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0092"; model_cov "4712"; model_pct "68.9"; chr12 rmsk exon 100159365 100159852 2115 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "3"; repStart "0"; chr12 rmsk exon 100159855 100162997 24330 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "3670"; repStart "0"; chr12 rmsk exon 100162987 100163231 5799 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "3481"; repFamily "ERVK"; repLeft "3242"; repStart "-3356"; chr12 rmsk exon 100163258 100163811 5799 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "3241"; repFamily "ERVK"; repLeft "2674"; repStart "-3596"; chr12 rmsk exon 100164249 100164984 5502 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "2"; repStart "-6096"; chr12 rmsk exon 100164986 100165461 2089 - . gene_id "HML5_12q23.1"; transcript_id "HML5_12q23.1"; locus "HML5_12q23.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0092"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_12q23.1d ### chr12 rmsk gene 100362836 100368664 . - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2777"; model_cov "4053"; model_pct "71.5"; chr12 rmsk exon 100362836 100363368 5356 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "5162"; repFamily "ERVL"; repLeft "4635"; repStart "-505"; chr12 rmsk exon 100363647 100363758 5356 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "4535"; repStart "-1033"; chr12 rmsk exon 100364070 100365894 5356 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "4534"; repFamily "ERVL"; repLeft "2586"; repStart "-1133"; chr12 rmsk exon 100365995 100366050 2124 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "3106"; repFamily "ERVL"; repLeft "3059"; repStart "-2561"; chr12 rmsk exon 100366076 100367203 2124 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "3058"; repFamily "ERVL"; repLeft "1760"; repStart "-2609"; chr12 rmsk exon 100368532 100368664 320 - . gene_id "ERVLE_12q23.1d"; transcript_id "ERVLE_12q23.1d"; locus "ERVLE_12q23.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2777"; repClass "LTR"; repEnd "1658"; repFamily "ERVL"; repLeft "1524"; repStart "-4009"; ### HERVEA_12q23.1a ### chr12 rmsk gene 100633105 100636127 . - . gene_id "HERVEA_12q23.1a"; transcript_id "HERVEA_12q23.1a"; locus "HERVEA_12q23.1a"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0071"; model_cov "2613"; model_pct "33.3"; chr12 rmsk exon 100633105 100633503 3101 - . gene_id "HERVEA_12q23.1a"; transcript_id "HERVEA_12q23.1a"; locus "HERVEA_12q23.1a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0071"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 100633504 100636127 20878 - . gene_id "HERVEA_12q23.1a"; transcript_id "HERVEA_12q23.1a"; locus "HERVEA_12q23.1a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0071"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "5234"; repStart "0"; ### HERVEA_12q23.1b ### chr12 rmsk gene 100642968 100648627 . - . gene_id "HERVEA_12q23.1b"; transcript_id "HERVEA_12q23.1b"; locus "HERVEA_12q23.1b"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0072"; model_cov "5242"; model_pct "66.8"; chr12 rmsk exon 100642968 100648188 40925 - . gene_id "HERVEA_12q23.1b"; transcript_id "HERVEA_12q23.1b"; locus "HERVEA_12q23.1b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0072"; repClass "LTR"; repEnd "5243"; repFamily "ERV1"; repLeft "1"; repStart "-2604"; chr12 rmsk exon 100648189 100648627 3592 - . gene_id "HERVEA_12q23.1b"; transcript_id "HERVEA_12q23.1b"; locus "HERVEA_12q23.1b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0072"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERVLE_12q23.1e ### chr12 rmsk gene 100866369 100869417 . - . gene_id "ERVLE_12q23.1e"; transcript_id "ERVLE_12q23.1e"; locus "ERVLE_12q23.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2778"; model_cov "1547"; model_pct "27.3"; chr12 rmsk exon 100866369 100866458 250 - . gene_id "ERVLE_12q23.1e"; transcript_id "ERVLE_12q23.1e"; locus "ERVLE_12q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2778"; repClass "LTR"; repEnd "5203"; repFamily "ERVL"; repLeft "5108"; repStart "-464"; chr12 rmsk exon 100866500 100866968 721 - . gene_id "ERVLE_12q23.1e"; transcript_id "ERVLE_12q23.1e"; locus "ERVLE_12q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2778"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "4545"; repStart "-656"; chr12 rmsk exon 100867729 100868264 1229 - . gene_id "ERVLE_12q23.1e"; transcript_id "ERVLE_12q23.1e"; locus "ERVLE_12q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2778"; repClass "LTR"; repEnd "2302"; repFamily "ERVL"; repLeft "1732"; repStart "-3365"; chr12 rmsk exon 100868994 100869417 509 - . gene_id "ERVLE_12q23.1e"; transcript_id "ERVLE_12q23.1e"; locus "ERVLE_12q23.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2778"; repClass "LTR"; repEnd "1152"; repFamily "ERVL"; repLeft "736"; repStart "-4515"; ### ERVLE_12q23.2a ### chr12 rmsk gene 102005493 102008563 . + . gene_id "ERVLE_12q23.2a"; transcript_id "ERVLE_12q23.2a"; locus "ERVLE_12q23.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2779"; model_cov "2448"; model_pct "43.2"; chr12 rmsk exon 102005493 102006558 1139 + . gene_id "ERVLE_12q23.2a"; transcript_id "ERVLE_12q23.2a"; locus "ERVLE_12q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2779"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "-3547"; repStart "1033"; chr12 rmsk exon 102006658 102007258 924 + . gene_id "ERVLE_12q23.2a"; transcript_id "ERVLE_12q23.2a"; locus "ERVLE_12q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2779"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "-2832"; repStart "2210"; chr12 rmsk exon 102007852 102008013 412 + . gene_id "ERVLE_12q23.2a"; transcript_id "ERVLE_12q23.2a"; locus "ERVLE_12q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2779"; repClass "LTR"; repEnd "3698"; repFamily "ERVL"; repLeft "-1969"; repStart "3533"; chr12 rmsk exon 102008017 102008563 1192 + . gene_id "ERVLE_12q23.2a"; transcript_id "ERVLE_12q23.2a"; locus "ERVLE_12q23.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2779"; repClass "LTR"; repEnd "3551"; repFamily "ERVL"; repLeft "-2116"; repStart "2980"; ### ERV316A3_12q23.2a ### chr12 rmsk gene 102009044 102011228 . + . gene_id "ERV316A3_12q23.2a"; transcript_id "ERV316A3_12q23.2a"; locus "ERV316A3_12q23.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2124"; model_cov "1679"; model_pct "32.1"; chr12 rmsk exon 102009044 102010725 3345 + . gene_id "ERV316A3_12q23.2a"; transcript_id "ERV316A3_12q23.2a"; locus "ERV316A3_12q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2124"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "-107"; repStart "3440"; chr12 rmsk exon 102010845 102011228 1445 + . gene_id "ERV316A3_12q23.2a"; transcript_id "ERV316A3_12q23.2a"; locus "ERV316A3_12q23.2a"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2124"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-141"; repStart "1"; ### MER41_12q23.2a ### chr12 rmsk gene 102305290 102307764 . + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0408"; model_cov "2919"; model_pct "49.1"; chr12 rmsk exon 102305290 102306010 4036 + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0408"; repClass "LTR"; repEnd "1122"; repFamily "ERV1"; repLeft "-4824"; repStart "288"; chr12 rmsk exon 102306324 102306924 4036 + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0408"; repClass "LTR"; repEnd "1210"; repFamily "ERV1"; repLeft "-4736"; repStart "151"; chr12 rmsk exon 102306920 102307057 784 + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0408"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1866"; chr12 rmsk exon 102307054 102307100 251 + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0408"; repClass "LTR"; repEnd "2216"; repFamily "ERV1"; repLeft "-3730"; repStart "2167"; chr12 rmsk exon 102307086 102307764 2890 + . gene_id "MER41_12q23.2a"; transcript_id "MER41_12q23.2a"; locus "MER41_12q23.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0408"; repClass "LTR"; repEnd "2292"; repFamily "ERV1"; repLeft "-3654"; repStart "1466"; ### MER41_12q23.2b ### chr12 rmsk gene 102313769 102314788 . + . gene_id "MER41_12q23.2b"; transcript_id "MER41_12q23.2b"; locus "MER41_12q23.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0409"; model_cov "1259"; model_pct "21.2"; chr12 rmsk exon 102313769 102314788 4248 + . gene_id "MER41_12q23.2b"; transcript_id "MER41_12q23.2b"; locus "MER41_12q23.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0409"; repClass "LTR"; repEnd "2403"; repFamily "ERV1"; repLeft "-3543"; repStart "1144"; ### ERVLB4_12q23.2a ### chr12 rmsk gene 102328732 102332097 . + . gene_id "ERVLB4_12q23.2a"; transcript_id "ERVLB4_12q23.2a"; locus "ERVLB4_12q23.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1323"; model_cov "2081"; model_pct "36.4"; chr12 rmsk exon 102328732 102329872 6447 + . gene_id "ERVLB4_12q23.2a"; transcript_id "ERVLB4_12q23.2a"; locus "ERVLB4_12q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1323"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "-2848"; repStart "1705"; chr12 rmsk exon 102329887 102330545 3791 + . gene_id "ERVLB4_12q23.2a"; transcript_id "ERVLB4_12q23.2a"; locus "ERVLB4_12q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1323"; repClass "LTR"; repEnd "3601"; repFamily "ERVL"; repLeft "-2113"; repStart "2929"; chr12 rmsk exon 102331324 102331656 1335 + . gene_id "ERVLB4_12q23.2a"; transcript_id "ERVLB4_12q23.2a"; locus "ERVLB4_12q23.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1323"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "-727"; repStart "4739"; chr12 rmsk exon 102331657 102332097 1166 + . gene_id "ERVLB4_12q23.2a"; transcript_id "ERVLB4_12q23.2a"; locus "ERVLB4_12q23.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1323"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "121"; ### ERVLE_12q23.2b ### chr12 rmsk gene 102364791 102365894 . + . gene_id "ERVLE_12q23.2b"; transcript_id "ERVLE_12q23.2b"; locus "ERVLE_12q23.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2780"; model_cov "1085"; model_pct "19.1"; chr12 rmsk exon 102364791 102365439 1019 + . gene_id "ERVLE_12q23.2b"; transcript_id "ERVLE_12q23.2b"; locus "ERVLE_12q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2780"; repClass "LTR"; repEnd "4723"; repFamily "ERVL"; repLeft "-944"; repStart "4034"; chr12 rmsk exon 102365526 102365894 659 + . gene_id "ERVLE_12q23.2b"; transcript_id "ERVLE_12q23.2b"; locus "ERVLE_12q23.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2780"; repClass "LTR"; repEnd "5255"; repFamily "ERVL"; repLeft "-412"; repStart "4859"; ### HUERSP2_12q23.2 ### chr12 rmsk gene 102593272 102596685 . - . gene_id "HUERSP2_12q23.2"; transcript_id "HUERSP2_12q23.2"; locus "HUERSP2_12q23.2"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0097"; model_cov "3181"; model_pct "100.0"; chr12 rmsk exon 102593272 102594387 4795 - . gene_id "HUERSP2_12q23.2"; transcript_id "HUERSP2_12q23.2"; locus "HUERSP2_12q23.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0097"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2009"; repStart "0"; chr12 rmsk exon 102594653 102596685 8826 - . gene_id "HUERSP2_12q23.2"; transcript_id "HUERSP2_12q23.2"; locus "HUERSP2_12q23.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0097"; repClass "LTR"; repEnd "-1826"; repFamily "ERV1"; repLeft "-3928"; repStart "-4914"; ### ERV316A3_12q23.2b ### chr12 rmsk gene 102630382 102631485 . - . gene_id "ERV316A3_12q23.2b"; transcript_id "ERV316A3_12q23.2b"; locus "ERV316A3_12q23.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2125"; model_cov "887"; model_pct "17.0"; chr12 rmsk exon 102630382 102630505 455 - . gene_id "ERV316A3_12q23.2b"; transcript_id "ERV316A3_12q23.2b"; locus "ERV316A3_12q23.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2125"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "314"; repStart "0"; chr12 rmsk exon 102630529 102631380 2336 - . gene_id "ERV316A3_12q23.2b"; transcript_id "ERV316A3_12q23.2b"; locus "ERV316A3_12q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2125"; repClass "LTR"; repEnd "4241"; repFamily "ERVL"; repLeft "3354"; repStart "-985"; chr12 rmsk exon 102631388 102631485 259 - . gene_id "ERV316A3_12q23.2b"; transcript_id "ERV316A3_12q23.2b"; locus "ERV316A3_12q23.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2125"; repClass "LTR"; repEnd "149"; repFamily "ERVL"; repLeft "44"; repStart "-289"; ### ERVLB4_12q23.2b ### chr12 rmsk gene 102653258 102661243 . + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1324"; model_cov "4918"; model_pct "86.1"; chr12 rmsk exon 102653258 102653805 2590 + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1324"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "-4"; chr12 rmsk exon 102653806 102656802 18152 + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1324"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "-2692"; repStart "1"; chr12 rmsk exon 102657136 102657541 18152 + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1324"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "-2288"; repStart "3023"; chr12 rmsk exon 102659269 102660787 7955 + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1324"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "-4"; repStart "4216"; chr12 rmsk exon 102660792 102661243 1998 + . gene_id "ERVLB4_12q23.2b"; transcript_id "ERVLB4_12q23.2b"; locus "ERVLB4_12q23.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1324"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### HML3_12q23.2a ### chr12 rmsk gene 102661271 102666844 . - . gene_id "HML3_12q23.2a"; transcript_id "HML3_12q23.2a"; locus "HML3_12q23.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0177"; model_cov "5231"; model_pct "86.9"; chr12 rmsk exon 102661271 102661783 4281 - . gene_id "HML3_12q23.2a"; transcript_id "HML3_12q23.2a"; locus "HML3_12q23.2a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0177"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 102661784 102666844 42011 - . gene_id "HML3_12q23.2a"; transcript_id "HML3_12q23.2a"; locus "HML3_12q23.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0177"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "790"; repStart "0"; ### HML3_12q23.2b ### chr12 rmsk gene 102666914 102668188 . - . gene_id "HML3_12q23.2b"; transcript_id "HML3_12q23.2b"; locus "HML3_12q23.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0178"; model_cov "788"; model_pct "13.1"; chr12 rmsk exon 102666914 102667675 42011 - . gene_id "HML3_12q23.2b"; transcript_id "HML3_12q23.2b"; locus "HML3_12q23.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0178"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5233"; repStart "0"; chr12 rmsk exon 102667676 102668188 4281 - . gene_id "HML3_12q23.2b"; transcript_id "HML3_12q23.2b"; locus "HML3_12q23.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0178"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_12q23.2c ### chr12 rmsk gene 102725917 102726913 . + . gene_id "ERVLE_12q23.2c"; transcript_id "ERVLE_12q23.2c"; locus "ERVLE_12q23.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2781"; model_cov "1042"; model_pct "18.4"; chr12 rmsk exon 102725917 102726913 3899 + . gene_id "ERVLE_12q23.2c"; transcript_id "ERVLE_12q23.2c"; locus "ERVLE_12q23.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2781"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "-961"; repStart "3664"; ### HERVL_12q23.2 ### chr12 rmsk gene 103062927 103069033 . + . gene_id "HERVL_12q23.2"; transcript_id "HERVL_12q23.2"; locus "HERVL_12q23.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1012"; model_cov "5575"; model_pct "98.6"; chr12 rmsk exon 103062927 103068480 42747 + . gene_id "HERVL_12q23.2"; transcript_id "HERVL_12q23.2"; locus "HERVL_12q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1012"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "79"; chr12 rmsk exon 103068481 103068875 3269 + . gene_id "HERVL_12q23.2"; transcript_id "HERVL_12q23.2"; locus "HERVL_12q23.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1012"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr12 rmsk exon 103068992 103069033 3269 + . gene_id "HERVL_12q23.2"; transcript_id "HERVL_12q23.2"; locus "HERVL_12q23.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1012"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "411"; ### HERVH_12q23.2 ### chr12 rmsk gene 103223124 103228555 . - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0967"; model_cov "4897"; model_pct "63.5"; chr12 rmsk exon 103223124 103223503 2527 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr12 rmsk exon 103223502 103223717 1382 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr12 rmsk exon 103223719 103224375 4243 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr12 rmsk exon 103224378 103224868 3369 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr12 rmsk exon 103224867 103225011 844 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "3140"; repStart "-4426"; chr12 rmsk exon 103225006 103228103 19693 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr12 rmsk exon 103228106 103228555 3520 - . gene_id "HERVH_12q23.2"; transcript_id "HERVH_12q23.2"; locus "HERVH_12q23.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0967"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_12q23.3a ### chr12 rmsk gene 104172676 104173980 . + . gene_id "ERVLB4_12q23.3a"; transcript_id "ERVLB4_12q23.3a"; locus "ERVLB4_12q23.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1326"; model_cov "1012"; model_pct "17.7"; chr12 rmsk exon 104172676 104173369 5656 + . gene_id "ERVLB4_12q23.3a"; transcript_id "ERVLB4_12q23.3a"; locus "ERVLB4_12q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1326"; repClass "LTR"; repEnd "2131"; repFamily "ERVL"; repLeft "-3583"; repStart "1411"; chr12 rmsk exon 104173680 104173980 5656 + . gene_id "ERVLB4_12q23.3a"; transcript_id "ERVLB4_12q23.3a"; locus "ERVLB4_12q23.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1326"; repClass "LTR"; repEnd "2424"; repFamily "ERVL"; repLeft "-3290"; repStart "2132"; ### HUERSP3B_12q23.3a ### chr12 rmsk gene 104230670 104234293 . - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0102"; model_cov "1465"; model_pct "19.7"; chr12 rmsk exon 104230670 104231201 3738 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr12 rmsk exon 104231613 104232285 5934 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "6731"; repFamily "ERV1"; repLeft "6070"; repStart "-687"; chr12 rmsk exon 104232571 104232722 5934 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "6069"; repFamily "ERV1"; repLeft "5923"; repStart "-1349"; chr12 rmsk exon 104233344 104233530 4021 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "5925"; repFamily "ERV1"; repLeft "5740"; repStart "-1493"; chr12 rmsk exon 104233822 104234189 4021 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "5739"; repFamily "ERV1"; repLeft "5376"; repStart "-1679"; chr12 rmsk exon 104234190 104234293 657 - . gene_id "HUERSP3B_12q23.3a"; transcript_id "HUERSP3B_12q23.3a"; locus "HUERSP3B_12q23.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0102"; repClass "LTR"; repEnd "4265"; repFamily "ERV1"; repLeft "4155"; repStart "-3153"; ### HUERSP3B_12q23.3b ### chr12 rmsk gene 104234656 104238444 . + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0103"; model_cov "2288"; model_pct "30.8"; chr12 rmsk exon 104234656 104235037 2893 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "2240"; repFamily "ERV1"; repLeft "-5178"; repStart "1851"; chr12 rmsk exon 104235480 104235883 3060 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2237"; chr12 rmsk exon 104236310 104236510 8087 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "3273"; repFamily "ERV1"; repLeft "-4145"; repStart "3073"; chr12 rmsk exon 104236809 104237732 8087 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "4156"; repFamily "ERV1"; repLeft "-3262"; repStart "3274"; chr12 rmsk exon 104238041 104238158 8087 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "4271"; repFamily "ERV1"; repLeft "-3147"; repStart "4157"; chr12 rmsk exon 104238152 104238444 2246 + . gene_id "HUERSP3B_12q23.3b"; transcript_id "HUERSP3B_12q23.3b"; locus "HUERSP3B_12q23.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0103"; repClass "LTR"; repEnd "5674"; repFamily "ERV1"; repLeft "-1744"; repStart "5376"; ### HUERSP2_12q23.3 ### chr12 rmsk gene 104824012 104828683 . + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0098"; model_cov "3005"; model_pct "97.3"; chr12 rmsk exon 104824012 104824856 5709 + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0098"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 104824857 104824984 484 + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0098"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "-2961"; repStart "1"; chr12 rmsk exon 104824999 104825896 14814 + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0098"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "-1938"; repStart "204"; chr12 rmsk exon 104826026 104827857 14814 + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0098"; repClass "LTR"; repEnd "3084"; repFamily "ERV1"; repLeft "-4"; repStart "1151"; chr12 rmsk exon 104827862 104828683 5717 + . gene_id "HUERSP2_12q23.3"; transcript_id "HUERSP2_12q23.3"; locus "HUERSP2_12q23.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0098"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK11_12q23.3a ### chr12 rmsk gene 105299228 105302833 . + . gene_id "HERVK11_12q23.3a"; transcript_id "HERVK11_12q23.3a"; locus "HERVK11_12q23.3a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0082"; model_cov "2607"; model_pct "32.8"; chr12 rmsk exon 105299228 105300302 6899 + . gene_id "HERVK11_12q23.3a"; transcript_id "HERVK11_12q23.3a"; locus "HERVK11_12q23.3a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0082"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 105300303 105300623 2485 + . gene_id "HERVK11_12q23.3a"; transcript_id "HERVK11_12q23.3a"; locus "HERVK11_12q23.3a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0082"; repClass "LTR"; repEnd "321"; repFamily "ERVK"; repLeft "-7632"; repStart "1"; chr12 rmsk exon 105300615 105301908 9431 + . gene_id "HERVK11_12q23.3a"; transcript_id "HERVK11_12q23.3a"; locus "HERVK11_12q23.3a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0082"; repClass "LTR"; repEnd "1566"; repFamily "ERVK"; repLeft "-6387"; repStart "200"; chr12 rmsk exon 105301917 105302833 7468 + . gene_id "HERVK11_12q23.3a"; transcript_id "HERVK11_12q23.3a"; locus "HERVK11_12q23.3a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0082"; repClass "LTR"; repEnd "3618"; repFamily "ERVK"; repLeft "-4335"; repStart "2697"; ### HML3_12q23.3 ### chr12 rmsk gene 105302834 105309240 . - . gene_id "HML3_12q23.3"; transcript_id "HML3_12q23.3"; locus "HML3_12q23.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0179"; model_cov "5475"; model_pct "90.9"; chr12 rmsk exon 105302834 105303344 4189 - . gene_id "HML3_12q23.3"; transcript_id "HML3_12q23.3"; locus "HML3_12q23.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0179"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 105303345 105308170 34641 - . gene_id "HML3_12q23.3"; transcript_id "HML3_12q23.3"; locus "HML3_12q23.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0179"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1125"; repStart "0"; chr12 rmsk exon 105308172 105308738 4535 - . gene_id "HML3_12q23.3"; transcript_id "HML3_12q23.3"; locus "HML3_12q23.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0179"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr12 rmsk exon 105308739 105309240 4184 - . gene_id "HML3_12q23.3"; transcript_id "HML3_12q23.3"; locus "HML3_12q23.3"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0179"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVK11_12q23.3b ### chr12 rmsk gene 105309243 105314445 . + . gene_id "HERVK11_12q23.3b"; transcript_id "HERVK11_12q23.3b"; locus "HERVK11_12q23.3b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0083"; model_cov "4148"; model_pct "52.2"; chr12 rmsk exon 105309243 105312388 25417 + . gene_id "HERVK11_12q23.3b"; transcript_id "HERVK11_12q23.3b"; locus "HERVK11_12q23.3b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0083"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "3615"; chr12 rmsk exon 105312374 105313370 8526 + . gene_id "HERVK11_12q23.3b"; transcript_id "HERVK11_12q23.3b"; locus "HERVK11_12q23.3b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0083"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chr12 rmsk exon 105313371 105314445 7273 + . gene_id "HERVK11_12q23.3b"; transcript_id "HERVK11_12q23.3b"; locus "HERVK11_12q23.3b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0083"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_12q23.3a ### chr12 rmsk gene 105602926 105610142 . - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1013"; model_cov "5982"; model_pct "100.0"; chr12 rmsk exon 105602926 105602975 351 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "404"; repStart "0"; chr12 rmsk exon 105602976 105603416 3117 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr12 rmsk exon 105603417 105605211 14383 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3873"; repStart "0"; chr12 rmsk exon 105605213 105609397 34297 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "2"; repStart "-1451"; chr12 rmsk exon 105609399 105609463 3084 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "391"; repStart "0"; chr12 rmsk exon 105609757 105610142 3084 - . gene_id "HERVL_12q23.3a"; transcript_id "HERVL_12q23.3a"; locus "HERVL_12q23.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1013"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "5"; repStart "-54"; ### ERV316A3_12q23.3a ### chr12 rmsk gene 105650017 105655637 . + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2126"; model_cov "3493"; model_pct "66.8"; chr12 rmsk exon 105650017 105650444 908 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 105650445 105651186 1424 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "1019"; repFamily "ERVL"; repLeft "-4207"; repStart "231"; chr12 rmsk exon 105651188 105651349 641 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "1401"; repFamily "ERVL"; repLeft "-3825"; repStart "1187"; chr12 rmsk exon 105651785 105651926 641 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "1556"; repFamily "ERVL"; repLeft "-3670"; repStart "1358"; chr12 rmsk exon 105651922 105652926 3931 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "3528"; repFamily "ERVL"; repLeft "-1698"; repStart "2546"; chr12 rmsk exon 105653414 105653746 3931 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "3855"; repFamily "ERVL"; repLeft "-1371"; repStart "3529"; chr12 rmsk exon 105653755 105654595 1932 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "-336"; repStart "4053"; chr12 rmsk exon 105655491 105655637 370 + . gene_id "ERV316A3_12q23.3a"; transcript_id "ERV316A3_12q23.3a"; locus "ERV316A3_12q23.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2126"; repClass "LTR"; repEnd "5046"; repFamily "ERVL"; repLeft "-180"; repStart "4898"; ### HERVL_12q23.3b ### chr12 rmsk gene 105678701 105685387 . + . gene_id "HERVL_12q23.3b"; transcript_id "HERVL_12q23.3b"; locus "HERVL_12q23.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1014"; model_cov "5653"; model_pct "100.0"; chr12 rmsk exon 105678701 105679121 2772 + . gene_id "HERVL_12q23.3b"; transcript_id "HERVL_12q23.3b"; locus "HERVL_12q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1014"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr12 rmsk exon 105679338 105679383 2772 + . gene_id "HERVL_12q23.3b"; transcript_id "HERVL_12q23.3b"; locus "HERVL_12q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1014"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; chr12 rmsk exon 105679384 105684960 39203 + . gene_id "HERVL_12q23.3b"; transcript_id "HERVL_12q23.3b"; locus "HERVL_12q23.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1014"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 105684961 105685387 3303 + . gene_id "HERVL_12q23.3b"; transcript_id "HERVL_12q23.3b"; locus "HERVL_12q23.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1014"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### ERV316A3_12q23.3b ### chr12 rmsk gene 105907541 105912052 . + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2127"; model_cov "2876"; model_pct "55.0"; chr12 rmsk exon 105907541 105907859 634 + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2127"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "-142"; repStart "5"; chr12 rmsk exon 105907892 105909677 4229 + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2127"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "-1185"; repStart "2196"; chr12 rmsk exon 105910131 105910547 2454 + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2127"; repClass "LTR"; repEnd "4423"; repFamily "ERVL"; repLeft "-803"; repStart "4034"; chr12 rmsk exon 105910847 105911474 2454 + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2127"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4424"; chr12 rmsk exon 105911601 105912052 1753 + . gene_id "ERV316A3_12q23.3b"; transcript_id "ERV316A3_12q23.3b"; locus "ERV316A3_12q23.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2127"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### ERVLB4_12q23.3b ### chr12 rmsk gene 105964734 105966262 . - . gene_id "ERVLB4_12q23.3b"; transcript_id "ERVLB4_12q23.3b"; locus "ERVLB4_12q23.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1327"; model_cov "1105"; model_pct "19.3"; chr12 rmsk exon 105964734 105964793 268 - . gene_id "ERVLB4_12q23.3b"; transcript_id "ERVLB4_12q23.3b"; locus "ERVLB4_12q23.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1327"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "464"; repStart "0"; chr12 rmsk exon 105964945 105965147 1148 - . gene_id "ERVLB4_12q23.3b"; transcript_id "ERVLB4_12q23.3b"; locus "ERVLB4_12q23.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1327"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "276"; repStart "-40"; chr12 rmsk exon 105965149 105966262 7157 - . gene_id "ERVLB4_12q23.3b"; transcript_id "ERVLB4_12q23.3b"; locus "ERVLB4_12q23.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1327"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "2963"; repStart "-1646"; ### MER4B_12q23.3 ### chr12 rmsk gene 106939073 106948274 . - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0342"; model_cov "6011"; model_pct "88.9"; chr12 rmsk exon 106939073 106939496 3116 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-70"; repStart "0"; chr12 rmsk exon 106939804 106940017 3116 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "219"; repFamily "ERV1"; repLeft "1"; repStart "-391"; chr12 rmsk exon 106940018 106940432 2444 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6351"; repStart "0"; chr12 rmsk exon 106940453 106943292 21327 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "6359"; repFamily "ERV1"; repLeft "3533"; repStart "-399"; chr12 rmsk exon 106943603 106943806 21327 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "3532"; repFamily "ERV1"; repLeft "3339"; repStart "-3226"; chr12 rmsk exon 106944128 106944474 6718 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "2999"; repStart "-3420"; chr12 rmsk exon 106944635 106945745 8084 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "3010"; repFamily "ERV1"; repLeft "1588"; repStart "-3748"; chr12 rmsk exon 106946641 106946795 8084 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "1435"; repStart "-5171"; chr12 rmsk exon 106946874 106946934 290 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "702"; repFamily "ERV1"; repLeft "648"; repStart "-6056"; chr12 rmsk exon 106947008 106947333 1998 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "572"; repFamily "ERV1"; repLeft "238"; repStart "-6186"; chr12 rmsk exon 106947376 106947659 1478 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "1"; repStart "-6473"; chr12 rmsk exon 106947668 106948274 2786 - . gene_id "MER4B_12q23.3"; transcript_id "MER4B_12q23.3"; locus "MER4B_12q23.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0342"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "-289"; repStart "-9"; ### LTR57_12q23.3 ### chr12 rmsk gene 106945746 106946887 . - . gene_id "LTR57_12q23.3"; transcript_id "LTR57_12q23.3"; locus "LTR57_12q23.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0131"; model_cov "595"; model_pct "11.1"; chr12 rmsk exon 106945746 106946070 1899 - . gene_id "LTR57_12q23.3"; transcript_id "LTR57_12q23.3"; locus "LTR57_12q23.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0131"; repClass "LTR"; repEnd "1577"; repFamily "ERVL"; repLeft "1234"; repStart "-3766"; chr12 rmsk exon 106946333 106946344 1899 - . gene_id "LTR57_12q23.3"; transcript_id "LTR57_12q23.3"; locus "LTR57_12q23.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0131"; repClass "LTR"; repEnd "1233"; repFamily "ERVL"; repLeft "1232"; repStart "-4110"; chr12 rmsk exon 106946796 106946887 1899 - . gene_id "LTR57_12q23.3"; transcript_id "LTR57_12q23.3"; locus "LTR57_12q23.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0131"; repClass "LTR"; repEnd "1231"; repFamily "ERVL"; repLeft "980"; repStart "-4112"; ### ERVLB4_12q23.3c ### chr12 rmsk gene 107136812 107141805 . - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1328"; model_cov "2788"; model_pct "48.8"; chr12 rmsk exon 107136812 107136870 459 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "93"; repStart "-409"; chr12 rmsk exon 107136872 107138583 16968 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "3968"; repStart "-2"; chr12 rmsk exon 107138867 107139313 16968 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "3967"; repFamily "ERVL"; repLeft "3518"; repStart "-1747"; chr12 rmsk exon 107139611 107140153 16968 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "3517"; repFamily "ERVL"; repLeft "2988"; repStart "-2197"; chr12 rmsk exon 107140157 107140324 1049 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "169"; repFamily "ERVL"; repLeft "1"; repStart "-387"; chr12 rmsk exon 107141739 107141805 494 - . gene_id "ERVLB4_12q23.3c"; transcript_id "ERVLB4_12q23.3c"; locus "ERVLB4_12q23.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1328"; repClass "LTR"; repEnd "3403"; repFamily "ERVL"; repLeft "3337"; repStart "-2311"; ### HERV9_12q23.3 ### chr12 rmsk gene 107214261 107218064 . + . gene_id "HERV9_12q23.3"; transcript_id "HERV9_12q23.3"; locus "HERV9_12q23.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0146"; model_cov "3004"; model_pct "35.6"; chr12 rmsk exon 107214261 107214938 5334 + . gene_id "HERV9_12q23.3"; transcript_id "HERV9_12q23.3"; locus "HERV9_12q23.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0146"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "-5456"; repStart "2321"; chr12 rmsk exon 107214937 107217286 19709 + . gene_id "HERV9_12q23.3"; transcript_id "HERV9_12q23.3"; locus "HERV9_12q23.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0146"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6091"; chr12 rmsk exon 107217287 107218064 6180 + . gene_id "HERV9_12q23.3"; transcript_id "HERV9_12q23.3"; locus "HERV9_12q23.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0146"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_12q23.3a ### chr12 rmsk gene 107717903 107718480 . + . gene_id "ERVLE_12q23.3a"; transcript_id "ERVLE_12q23.3a"; locus "ERVLE_12q23.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2784"; model_cov "688"; model_pct "12.1"; chr12 rmsk exon 107717903 107718480 505 + . gene_id "ERVLE_12q23.3a"; transcript_id "ERVLE_12q23.3a"; locus "ERVLE_12q23.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2784"; repClass "LTR"; repEnd "1018"; repFamily "ERVL"; repLeft "-4649"; repStart "330"; ### MER61_12q23.3 ### chr12 rmsk gene 107788616 107793326 . - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0294"; model_cov "3252"; model_pct "62.3"; chr12 rmsk exon 107788616 107789023 2692 - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0294"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 107789024 107790885 21174 - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0294"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3337"; repStart "0"; chr12 rmsk exon 107791198 107792487 21174 - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0294"; repClass "LTR"; repEnd "3336"; repFamily "ERV1"; repLeft "2092"; repStart "-1881"; chr12 rmsk exon 107792891 107793003 21174 - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0294"; repClass "LTR"; repEnd "2091"; repFamily "ERV1"; repLeft "1997"; repStart "-3126"; chr12 rmsk exon 107793299 107793326 21174 - . gene_id "MER61_12q23.3"; transcript_id "MER61_12q23.3"; locus "MER61_12q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0294"; repClass "LTR"; repEnd "1996"; repFamily "ERV1"; repLeft "1962"; repStart "-3221"; ### ERVLE_12q23.3b ### chr12 rmsk gene 107815047 107816949 . + . gene_id "ERVLE_12q23.3b"; transcript_id "ERVLE_12q23.3b"; locus "ERVLE_12q23.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2786"; model_cov "1135"; model_pct "20.0"; chr12 rmsk exon 107815047 107815380 3425 + . gene_id "ERVLE_12q23.3b"; transcript_id "ERVLE_12q23.3b"; locus "ERVLE_12q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2786"; repClass "LTR"; repEnd "3830"; repFamily "ERVL"; repLeft "-1837"; repStart "3516"; chr12 rmsk exon 107815693 107816002 3425 + . gene_id "ERVLE_12q23.3b"; transcript_id "ERVLE_12q23.3b"; locus "ERVLE_12q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2786"; repClass "LTR"; repEnd "4105"; repFamily "ERVL"; repLeft "-1562"; repStart "3831"; chr12 rmsk exon 107816443 107816949 3425 + . gene_id "ERVLE_12q23.3b"; transcript_id "ERVLE_12q23.3b"; locus "ERVLE_12q23.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2786"; repClass "LTR"; repEnd "4653"; repFamily "ERVL"; repLeft "-1014"; repStart "4106"; ### HERV30_12q23.3 ### chr12 rmsk gene 107825557 107829747 . - . gene_id "HERV30_12q23.3"; transcript_id "HERV30_12q23.3"; locus "HERV30_12q23.3"; category "internal"; intModel "HERV30-int"; locid "HERV30-int_0020"; model_cov "2499"; model_pct "30.3"; chr12 rmsk exon 107825557 107826117 3807 - . gene_id "HERV30_12q23.3"; transcript_id "HERV30_12q23.3"; locus "HERV30_12q23.3"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0020"; repClass "LTR"; repEnd "7535"; repFamily "ERV1"; repLeft "6971"; repStart "-722"; chr12 rmsk exon 107827428 107827878 2757 - . gene_id "HERV30_12q23.3"; transcript_id "HERV30_12q23.3"; locus "HERV30_12q23.3"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0020"; repClass "LTR"; repEnd "6968"; repFamily "ERV1"; repLeft "6513"; repStart "-1289"; chr12 rmsk exon 107827970 107828783 10862 - . gene_id "HERV30_12q23.3"; transcript_id "HERV30_12q23.3"; locus "HERV30_12q23.3"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0020"; repClass "LTR"; repEnd "6509"; repFamily "ERV1"; repLeft "5680"; repStart "-1748"; chr12 rmsk exon 107829091 107829747 10862 - . gene_id "HERV30_12q23.3"; transcript_id "HERV30_12q23.3"; locus "HERV30_12q23.3"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0020"; repClass "LTR"; repEnd "5679"; repFamily "ERV1"; repLeft "5028"; repStart "-2578"; ### LTR19_12q23.3 ### chr12 rmsk gene 107848466 107851407 . + . gene_id "LTR19_12q23.3"; transcript_id "LTR19_12q23.3"; locus "LTR19_12q23.3"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0038"; model_cov "2205"; model_pct "39.5"; chr12 rmsk exon 107848466 107848958 2945 + . gene_id "LTR19_12q23.3"; transcript_id "LTR19_12q23.3"; locus "LTR19_12q23.3"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0038"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 107848959 107850386 14484 + . gene_id "LTR19_12q23.3"; transcript_id "LTR19_12q23.3"; locus "LTR19_12q23.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0038"; repClass "LTR"; repEnd "1503"; repFamily "ERV1"; repLeft "-4083"; repStart "1"; chr12 rmsk exon 107850697 107851407 14484 + . gene_id "LTR19_12q23.3"; transcript_id "LTR19_12q23.3"; locus "LTR19_12q23.3"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0038"; repClass "LTR"; repEnd "2207"; repFamily "ERV1"; repLeft "-3379"; repStart "1504"; ### ERV316A3_12q23.3c ### chr12 rmsk gene 108413975 108419008 . - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2128"; model_cov "2405"; model_pct "46.0"; chr12 rmsk exon 108413975 108414343 1065 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "1"; repStart "-49"; chr12 rmsk exon 108414344 108415771 3475 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3782"; repStart "0"; chr12 rmsk exon 108416071 108416218 3475 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "3781"; repFamily "ERVL"; repLeft "3629"; repStart "-1445"; chr12 rmsk exon 108417601 108417764 581 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "3632"; repFamily "ERVL"; repLeft "3457"; repStart "-1594"; chr12 rmsk exon 108417860 108418069 636 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "3063"; repFamily "ERVL"; repLeft "2860"; repStart "-2163"; chr12 rmsk exon 108418585 108419008 1499 - . gene_id "ERV316A3_12q23.3c"; transcript_id "ERV316A3_12q23.3c"; locus "ERV316A3_12q23.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2128"; repClass "LTR"; repEnd "2685"; repFamily "ERVL"; repLeft "2254"; repStart "-2541"; ### ERV316A3_12q23.3d ### chr12 rmsk gene 108420145 108421558 . - . gene_id "ERV316A3_12q23.3d"; transcript_id "ERV316A3_12q23.3d"; locus "ERV316A3_12q23.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2129"; model_cov "606"; model_pct "11.6"; chr12 rmsk exon 108420145 108420533 1436 - . gene_id "ERV316A3_12q23.3d"; transcript_id "ERV316A3_12q23.3d"; locus "ERV316A3_12q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2129"; repClass "LTR"; repEnd "3000"; repFamily "ERVL"; repLeft "2609"; repStart "-2226"; chr12 rmsk exon 108421335 108421558 686 - . gene_id "ERV316A3_12q23.3d"; transcript_id "ERV316A3_12q23.3d"; locus "ERV316A3_12q23.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2129"; repClass "LTR"; repEnd "1826"; repFamily "ERVL"; repLeft "1611"; repStart "-3400"; ### ERV316A3_12q23.3e ### chr12 rmsk gene 108421653 108425860 . - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2130"; model_cov "1980"; model_pct "37.9"; chr12 rmsk exon 108421653 108421759 524 - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2130"; repClass "LTR"; repEnd "1898"; repFamily "ERVL"; repLeft "1791"; repStart "-3328"; chr12 rmsk exon 108423155 108423208 303 - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2130"; repClass "LTR"; repEnd "1734"; repFamily "ERVL"; repLeft "1679"; repStart "-3492"; chr12 rmsk exon 108423214 108423786 2157 - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2130"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "1414"; repStart "-3144"; chr12 rmsk exon 108424085 108425197 2157 - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2130"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "33"; repStart "-4043"; chr12 rmsk exon 108425474 108425860 1456 - . gene_id "ERV316A3_12q23.3e"; transcript_id "ERV316A3_12q23.3e"; locus "ERV316A3_12q23.3e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2130"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "46"; repStart "-17"; ### ERVLE_12q24.11 ### chr12 rmsk gene 108956438 108957846 . + . gene_id "ERVLE_12q24.11"; transcript_id "ERVLE_12q24.11"; locus "ERVLE_12q24.11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2787"; model_cov "1124"; model_pct "19.8"; chr12 rmsk exon 108956438 108957175 1999 + . gene_id "ERVLE_12q24.11"; transcript_id "ERVLE_12q24.11"; locus "ERVLE_12q24.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2787"; repClass "LTR"; repEnd "4841"; repFamily "ERVL"; repLeft "-826"; repStart "4099"; chr12 rmsk exon 108957462 108957846 1999 + . gene_id "ERVLE_12q24.11"; transcript_id "ERVLE_12q24.11"; locus "ERVLE_12q24.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2787"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-443"; repStart "4842"; ### ERV316A3_12q24.11 ### chr12 rmsk gene 110181780 110183783 . - . gene_id "ERV316A3_12q24.11"; transcript_id "ERV316A3_12q24.11"; locus "ERV316A3_12q24.11"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2131"; model_cov "1586"; model_pct "30.3"; chr12 rmsk exon 110181780 110182194 1746 - . gene_id "ERV316A3_12q24.11"; transcript_id "ERV316A3_12q24.11"; locus "ERV316A3_12q24.11"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2131"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr12 rmsk exon 110182195 110183783 3370 - . gene_id "ERV316A3_12q24.11"; transcript_id "ERV316A3_12q24.11"; locus "ERV316A3_12q24.11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2131"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3640"; repStart "0"; ### HERVH_12q24.11 ### chr12 rmsk gene 110404978 110411068 . - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0968"; model_cov "5170"; model_pct "67.0"; chr12 rmsk exon 110404978 110405064 730 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "364"; repStart "0"; chr12 rmsk exon 110405358 110405460 529 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-326"; chr12 rmsk exon 110405461 110405915 2836 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr12 rmsk exon 110405900 110407182 7543 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4859"; repStart "-1290"; chr12 rmsk exon 110407171 110407618 2808 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr12 rmsk exon 110407598 110408745 13704 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1845"; repStart "-4718"; chr12 rmsk exon 110409134 110410218 13704 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "1844"; repFamily "ERV1"; repLeft "800"; repStart "-5869"; chr12 rmsk exon 110410189 110410700 2110 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "1"; repStart "-7191"; chr12 rmsk exon 110410701 110411068 2448 - . gene_id "HERVH_12q24.11"; transcript_id "HERVH_12q24.11"; locus "HERVH_12q24.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0968"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12q24.11a ### chr12 rmsk gene 111125973 111131055 . - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1329"; model_cov "4009"; model_pct "70.2"; chr12 rmsk exon 111125973 111126110 2537 - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1329"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "440"; repStart "0"; chr12 rmsk exon 111126392 111126785 2537 - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1329"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "2"; repStart "-117"; chr12 rmsk exon 111126786 111127684 5539 - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1329"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4788"; repStart "0"; chr12 rmsk exon 111128033 111128085 5539 - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1329"; repClass "LTR"; repEnd "4787"; repFamily "ERVL"; repLeft "4737"; repStart "-927"; chr12 rmsk exon 111128085 111131055 22723 - . gene_id "ERVLB4_12q24.11a"; transcript_id "ERVLB4_12q24.11a"; locus "ERVLB4_12q24.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1329"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "898"; repStart "-1783"; ### ERVLB4_12q24.11b ### chr12 rmsk gene 111133649 111134589 . - . gene_id "ERVLB4_12q24.11b"; transcript_id "ERVLB4_12q24.11b"; locus "ERVLB4_12q24.11b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1330"; model_cov "893"; model_pct "15.6"; chr12 rmsk exon 111133649 111134551 22723 - . gene_id "ERVLB4_12q24.11b"; transcript_id "ERVLB4_12q24.11b"; locus "ERVLB4_12q24.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1330"; repClass "LTR"; repEnd "897"; repFamily "ERVL"; repLeft "4"; repStart "-4817"; chr12 rmsk exon 111134552 111134589 300 - . gene_id "ERVLB4_12q24.11b"; transcript_id "ERVLB4_12q24.11b"; locus "ERVLB4_12q24.11b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1330"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "519"; repStart "0"; ### HML6_12q24.12a ### chr12 rmsk gene 111816175 111824274 . - . gene_id "HML6_12q24.12a"; transcript_id "HML6_12q24.12a"; locus "HML6_12q24.12a"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0065"; model_cov "6381"; model_pct "88.6"; chr12 rmsk exon 111816175 111816596 2982 - . gene_id "HML6_12q24.12a"; transcript_id "HML6_12q24.12a"; locus "HML6_12q24.12a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0065"; repClass "LTR"; repEnd "423"; repFamily "ERVK"; repLeft "1"; repStart "-9"; chr12 rmsk exon 111816599 111818873 58063 - . gene_id "HML6_12q24.12a"; transcript_id "HML6_12q24.12a"; locus "HML6_12q24.12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0065"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "4914"; repStart "-2"; chr12 rmsk exon 111819198 111820733 58063 - . gene_id "HML6_12q24.12a"; transcript_id "HML6_12q24.12a"; locus "HML6_12q24.12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0065"; repClass "LTR"; repEnd "4913"; repFamily "ERVK"; repLeft "3368"; repStart "-2289"; chr12 rmsk exon 111821804 111824274 58063 - . gene_id "HML6_12q24.12a"; transcript_id "HML6_12q24.12a"; locus "HML6_12q24.12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0065"; repClass "LTR"; repEnd "3367"; repFamily "ERVK"; repLeft "817"; repStart "-3835"; ### HML6_12q24.12b ### chr12 rmsk gene 111824341 111825854 . - . gene_id "HML6_12q24.12b"; transcript_id "HML6_12q24.12b"; locus "HML6_12q24.12b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0066"; model_cov "814"; model_pct "11.3"; chr12 rmsk exon 111824341 111824953 58063 - . gene_id "HML6_12q24.12b"; transcript_id "HML6_12q24.12b"; locus "HML6_12q24.12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0066"; repClass "LTR"; repEnd "3367"; repFamily "ERVK"; repLeft "2734"; repStart "-3835"; chr12 rmsk exon 111825232 111825416 58063 - . gene_id "HML6_12q24.12b"; transcript_id "HML6_12q24.12b"; locus "HML6_12q24.12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0066"; repClass "LTR"; repEnd "182"; repFamily "ERVK"; repLeft "1"; repStart "-7020"; chr12 rmsk exon 111825428 111825854 3092 - . gene_id "HML6_12q24.12b"; transcript_id "HML6_12q24.12b"; locus "HML6_12q24.12b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0066"; repClass "LTR"; repEnd "428"; repFamily "ERVK"; repLeft "3"; repStart "-4"; ### MER101_12q24.13a ### chr12 rmsk gene 111946077 111949833 . + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0288"; model_cov "2497"; model_pct "37.6"; chr12 rmsk exon 111946077 111946207 3034 + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0288"; repClass "LTR"; repEnd "3029"; repFamily "ERV1"; repLeft "-3610"; repStart "2903"; chr12 rmsk exon 111946697 111946795 3034 + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0288"; repClass "LTR"; repEnd "3117"; repFamily "ERV1"; repLeft "-3522"; repStart "3030"; chr12 rmsk exon 111946931 111947921 3034 + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0288"; repClass "LTR"; repEnd "3916"; repFamily "ERV1"; repLeft "-2723"; repStart "2889"; chr12 rmsk exon 111948778 111948796 935 + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0288"; repClass "LTR"; repEnd "4040"; repFamily "ERV1"; repLeft "-2599"; repStart "4024"; chr12 rmsk exon 111949156 111949833 1289 + . gene_id "MER101_12q24.13a"; transcript_id "MER101_12q24.13a"; locus "MER101_12q24.13a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0288"; repClass "LTR"; repEnd "6043"; repFamily "ERV1"; repLeft "-596"; repStart "4802"; ### MER101_12q24.13b ### chr12 rmsk gene 111950162 111953828 . + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0289"; model_cov "937"; model_pct "14.1"; chr12 rmsk exon 111950162 111950285 1289 + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0289"; repClass "LTR"; repEnd "5703"; repFamily "ERV1"; repLeft "-936"; repStart "5582"; chr12 rmsk exon 111950346 111950468 587 + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0289"; repClass "LTR"; repEnd "5886"; repFamily "ERV1"; repLeft "-753"; repStart "5763"; chr12 rmsk exon 111952278 111952471 2328 + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0289"; repClass "LTR"; repEnd "6150"; repFamily "ERV1"; repLeft "-489"; repStart "5945"; chr12 rmsk exon 111952916 111953413 2328 + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0289"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6151"; chr12 rmsk exon 111953414 111953828 2229 + . gene_id "MER101_12q24.13b"; transcript_id "MER101_12q24.13b"; locus "MER101_12q24.13b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0289"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_12q24.13a ### chr12 rmsk gene 112903117 112904650 . - . gene_id "MER4_12q24.13a"; transcript_id "MER4_12q24.13a"; locus "MER4_12q24.13a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0602"; model_cov "689"; model_pct "10.4"; chr12 rmsk exon 112903117 112903538 3061 - . gene_id "MER4_12q24.13a"; transcript_id "MER4_12q24.13a"; locus "MER4_12q24.13a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0602"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-26"; chr12 rmsk exon 112903544 112904144 3909 - . gene_id "MER4_12q24.13a"; transcript_id "MER4_12q24.13a"; locus "MER4_12q24.13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0602"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "5989"; repStart "-1"; chr12 rmsk exon 112904588 112904650 3909 - . gene_id "MER4_12q24.13a"; transcript_id "MER4_12q24.13a"; locus "MER4_12q24.13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0602"; repClass "LTR"; repEnd "5988"; repFamily "ERV1"; repLeft "5907"; repStart "-610"; ### ERV316A3_12q24.13 ### chr12 rmsk gene 112974379 112975753 . + . gene_id "ERV316A3_12q24.13"; transcript_id "ERV316A3_12q24.13"; locus "ERV316A3_12q24.13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2133"; model_cov "1100"; model_pct "21.0"; chr12 rmsk exon 112974379 112974418 2475 + . gene_id "ERV316A3_12q24.13"; transcript_id "ERV316A3_12q24.13"; locus "ERV316A3_12q24.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2133"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "-4658"; repStart "534"; chr12 rmsk exon 112974722 112975753 2475 + . gene_id "ERV316A3_12q24.13"; transcript_id "ERV316A3_12q24.13"; locus "ERV316A3_12q24.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2133"; repClass "LTR"; repEnd "1635"; repFamily "ERVL"; repLeft "-3591"; repStart "569"; ### MER4_12q24.13b ### chr12 rmsk gene 113404130 113408713 . + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0604"; model_cov "2164"; model_pct "32.8"; chr12 rmsk exon 113404130 113404273 2662 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0604"; repClass "LTR"; repEnd "122"; repFamily "ERV1"; repLeft "-343"; repStart "2"; chr12 rmsk exon 113404508 113404837 2662 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0604"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "123"; chr12 rmsk exon 113404849 113404913 1695 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "75"; repFamily "ERV1"; repLeft "-6523"; repStart "8"; chr12 rmsk exon 113405188 113406089 1695 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "76"; chr12 rmsk exon 113406117 113406152 1394 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "1145"; repFamily "ERV1"; repLeft "-5453"; repStart "1112"; chr12 rmsk exon 113406469 113407098 1394 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "1784"; repFamily "ERV1"; repLeft "-4814"; repStart "1146"; chr12 rmsk exon 113407323 113407505 1179 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "-4631"; repStart "1788"; chr12 rmsk exon 113407816 113408034 1179 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0604"; repClass "LTR"; repEnd "2180"; repFamily "ERV1"; repLeft "-4418"; repStart "1968"; chr12 rmsk exon 113408041 113408392 1277 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0604"; repClass "LTR"; repEnd "452"; repFamily "ERV1"; repLeft "-13"; repStart "16"; chr12 rmsk exon 113408695 113408713 1277 + . gene_id "MER4_12q24.13b"; transcript_id "MER4_12q24.13b"; locus "MER4_12q24.13b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0604"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "453"; ### HERVH_12q24.21 ### chr12 rmsk gene 114055744 114063389 . + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0970"; model_cov "6688"; model_pct "86.7"; chr12 rmsk exon 114055744 114056173 3243 + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0970"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 114056174 114056601 1232 + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0970"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr12 rmsk exon 114056662 114061403 22127 + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0970"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "-2616"; repStart "450"; chr12 rmsk exon 114061398 114062959 8660 + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0970"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6130"; chr12 rmsk exon 114062960 114063389 3295 + . gene_id "HERVH_12q24.21"; transcript_id "HERVH_12q24.21"; locus "HERVH_12q24.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0970"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_12q24.21 ### chr12 rmsk gene 114064554 114073181 . + . gene_id "HERVIP10F_12q24.21"; transcript_id "HERVIP10F_12q24.21"; locus "HERVIP10F_12q24.21"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0085"; model_cov "7732"; model_pct "99.9"; chr12 rmsk exon 114064554 114064953 2211 + . gene_id "HERVIP10F_12q24.21"; transcript_id "HERVIP10F_12q24.21"; locus "HERVIP10F_12q24.21"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0085"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "117"; chr12 rmsk exon 114064954 114072633 61590 + . gene_id "HERVIP10F_12q24.21"; transcript_id "HERVIP10F_12q24.21"; locus "HERVIP10F_12q24.21"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0085"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "-4"; repStart "1"; chr12 rmsk exon 114072637 114073181 3007 + . gene_id "HERVIP10F_12q24.21"; transcript_id "HERVIP10F_12q24.21"; locus "HERVIP10F_12q24.21"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0085"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_12q24.21 ### chr12 rmsk gene 114174401 114179646 . + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0101"; model_cov "3818"; model_pct "58.4"; chr12 rmsk exon 114174401 114174776 1572 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 114175296 114175557 689 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "-386"; repFamily "ERV1"; repLeft "-6925"; repStart "-652"; chr12 rmsk exon 114175732 114176009 878 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "1497"; repFamily "ERV1"; repLeft "-5042"; repStart "1208"; chr12 rmsk exon 114176035 114177504 6159 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "3224"; repFamily "ERV1"; repLeft "-3315"; repStart "1611"; chr12 rmsk exon 114177503 114178943 8074 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "6126"; repFamily "ERV1"; repLeft "-413"; repStart "4600"; chr12 rmsk exon 114179106 114179228 474 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "6536"; repFamily "ERV1"; repLeft "-3"; repStart "6412"; chr12 rmsk exon 114179229 114179646 1250 + . gene_id "HERV4_12q24.21"; transcript_id "HERV4_12q24.21"; locus "HERV4_12q24.21"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0101"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "0"; repStart "-157"; ### ERV316A3_12q24.21 ### chr12 rmsk gene 115722285 115725099 . - . gene_id "ERV316A3_12q24.21"; transcript_id "ERV316A3_12q24.21"; locus "ERV316A3_12q24.21"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2134"; model_cov "2260"; model_pct "43.2"; chr12 rmsk exon 115722285 115723668 2527 - . gene_id "ERV316A3_12q24.21"; transcript_id "ERV316A3_12q24.21"; locus "ERV316A3_12q24.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2134"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "3433"; repStart "-308"; chr12 rmsk exon 115723670 115723764 356 - . gene_id "ERV316A3_12q24.21"; transcript_id "ERV316A3_12q24.21"; locus "ERV316A3_12q24.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2134"; repClass "LTR"; repEnd "786"; repFamily "ERVL"; repLeft "693"; repStart "-4440"; chr12 rmsk exon 115723949 115724644 1962 - . gene_id "ERV316A3_12q24.21"; transcript_id "ERV316A3_12q24.21"; locus "ERV316A3_12q24.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2134"; repClass "LTR"; repEnd "689"; repFamily "ERVL"; repLeft "7"; repStart "-4537"; chr12 rmsk exon 115724647 115725099 1976 - . gene_id "ERV316A3_12q24.21"; transcript_id "ERV316A3_12q24.21"; locus "ERV316A3_12q24.21"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2134"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERVLE_12q24.21 ### chr12 rmsk gene 115921517 115923027 . + . gene_id "ERVLE_12q24.21"; transcript_id "ERVLE_12q24.21"; locus "ERVLE_12q24.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2788"; model_cov "833"; model_pct "14.7"; chr12 rmsk exon 115921517 115921666 2216 + . gene_id "ERVLE_12q24.21"; transcript_id "ERVLE_12q24.21"; locus "ERVLE_12q24.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2788"; repClass "LTR"; repEnd "4968"; repFamily "ERVL"; repLeft "-699"; repStart "4827"; chr12 rmsk exon 115922350 115923027 2216 + . gene_id "ERVLE_12q24.21"; transcript_id "ERVLE_12q24.21"; locus "ERVLE_12q24.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2788"; repClass "LTR"; repEnd "5661"; repFamily "ERVL"; repLeft "-6"; repStart "4969"; ### MER4B_12q24.22 ### chr12 rmsk gene 117602208 117603678 . + . gene_id "MER4B_12q24.22"; transcript_id "MER4B_12q24.22"; locus "MER4B_12q24.22"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0343"; model_cov "888"; model_pct "13.1"; chr12 rmsk exon 117602208 117602223 2219 + . gene_id "MER4B_12q24.22"; transcript_id "MER4B_12q24.22"; locus "MER4B_12q24.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0343"; repClass "LTR"; repEnd "5880"; repFamily "ERV1"; repLeft "-878"; repStart "5865"; chr12 rmsk exon 117602747 117603244 2219 + . gene_id "MER4B_12q24.22"; transcript_id "MER4B_12q24.22"; locus "MER4B_12q24.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0343"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "-371"; repStart "5881"; chr12 rmsk exon 117603318 117603678 1897 + . gene_id "MER4B_12q24.22"; transcript_id "MER4B_12q24.22"; locus "MER4B_12q24.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0343"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6391"; ### HERVL_12q24.22 ### chr12 rmsk gene 117650023 117657055 . + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1015"; model_cov "5552"; model_pct "98.2"; chr12 rmsk exon 117650023 117650446 2863 + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1015"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr12 rmsk exon 117650447 117652035 45626 + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1015"; repClass "LTR"; repEnd "1569"; repFamily "ERVL"; repLeft "-4085"; repStart "1"; chr12 rmsk exon 117652319 117656327 45626 + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1015"; repClass "LTR"; repEnd "5554"; repFamily "ERVL"; repLeft "-100"; repStart "1570"; chr12 rmsk exon 117656620 117656922 2329 + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1015"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "93"; chr12 rmsk exon 117657016 117657055 2329 + . gene_id "HERVL_12q24.22"; transcript_id "HERVL_12q24.22"; locus "HERVL_12q24.22"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1015"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "401"; ### HERVFH19_12q24.23 ### chr12 rmsk gene 118480197 118489482 . - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; category "prototype"; intModel "HERVFH19-int"; locid "HERVFH19-int_0034"; model_cov "7833"; model_pct "100.0"; chr12 rmsk exon 118480197 118480641 2621 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 118480643 118482886 55952 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "7718"; repFamily "ERV1"; repLeft "5407"; repStart "-1"; chr12 rmsk exon 118483177 118486794 55952 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "5406"; repFamily "ERV1"; repLeft "1842"; repStart "-2313"; chr12 rmsk exon 118487091 118488853 55952 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "1841"; repFamily "ERV1"; repLeft "28"; repStart "-5878"; chr12 rmsk exon 118488853 118488998 940 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "1"; repStart "-7573"; chr12 rmsk exon 118488999 118489482 3104 - . gene_id "HERVFH19_12q24.23"; transcript_id "HERVFH19_12q24.23"; locus "HERVFH19_12q24.23"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0034"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_12q24.23 ### chr12 rmsk gene 119329086 119331537 . + . gene_id "ERV316A3_12q24.23"; transcript_id "ERV316A3_12q24.23"; locus "ERV316A3_12q24.23"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2136"; model_cov "1178"; model_pct "22.5"; chr12 rmsk exon 119329086 119329350 1394 + . gene_id "ERV316A3_12q24.23"; transcript_id "ERV316A3_12q24.23"; locus "ERV316A3_12q24.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2136"; repClass "LTR"; repEnd "4871"; repFamily "ERVL"; repLeft "-355"; repStart "4595"; chr12 rmsk exon 119330223 119331111 2759 + . gene_id "ERV316A3_12q24.23"; transcript_id "ERV316A3_12q24.23"; locus "ERV316A3_12q24.23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2136"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "4321"; chr12 rmsk exon 119331121 119331537 1187 + . gene_id "ERV316A3_12q24.23"; transcript_id "ERV316A3_12q24.23"; locus "ERV316A3_12q24.23"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2136"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-1"; repStart "7"; ### ERVLE_12q24.23 ### chr12 rmsk gene 119958014 119961309 . - . gene_id "ERVLE_12q24.23"; transcript_id "ERVLE_12q24.23"; locus "ERVLE_12q24.23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2789"; model_cov "1128"; model_pct "19.9"; chr12 rmsk exon 119958014 119958567 1361 - . gene_id "ERVLE_12q24.23"; transcript_id "ERVLE_12q24.23"; locus "ERVLE_12q24.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2789"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "4599"; repStart "-506"; chr12 rmsk exon 119958859 119958923 1217 - . gene_id "ERVLE_12q24.23"; transcript_id "ERVLE_12q24.23"; locus "ERVLE_12q24.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2789"; repClass "LTR"; repEnd "4612"; repFamily "ERVL"; repLeft "4548"; repStart "-1055"; chr12 rmsk exon 119959834 119959992 1053 - . gene_id "ERVLE_12q24.23"; transcript_id "ERVLE_12q24.23"; locus "ERVLE_12q24.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2789"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "4398"; repStart "-1123"; chr12 rmsk exon 119960976 119961309 1053 - . gene_id "ERVLE_12q24.23"; transcript_id "ERVLE_12q24.23"; locus "ERVLE_12q24.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2789"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "4041"; repStart "-1270"; ### HERVL_12q24.31 ### chr12 rmsk gene 120606997 120614359 . + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1016"; model_cov "5651"; model_pct "99.9"; chr12 rmsk exon 120606997 120607546 2047 + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1016"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr12 rmsk exon 120607547 120607587 33013 + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1016"; repClass "LTR"; repEnd "36"; repFamily "ERVL"; repLeft "-5618"; repStart "1"; chr12 rmsk exon 120607902 120608065 33013 + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1016"; repClass "LTR"; repEnd "188"; repFamily "ERVL"; repLeft "-5466"; repStart "37"; chr12 rmsk exon 120608349 120613810 33013 + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1016"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "189"; chr12 rmsk exon 120613811 120614359 2044 + . gene_id "HERVL_12q24.31"; transcript_id "HERVL_12q24.31"; locus "HERVL_12q24.31"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1016"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HUERSP1_12q24.31a ### chr12 rmsk gene 122692601 122697575 . - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0154"; model_cov "977"; model_pct "15.6"; chr12 rmsk exon 122692601 122693167 3615 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "526"; repFamily "ERV1"; repLeft "1"; repStart "-165"; chr12 rmsk exon 122693168 122693203 1192 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "6240"; repStart "0"; chr12 rmsk exon 122693492 122693792 1192 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "6239"; repFamily "ERV1"; repLeft "5945"; repStart "-24"; chr12 rmsk exon 122695823 122696017 1036 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "1311"; repFamily "ERV1"; repLeft "1131"; repStart "-4952"; chr12 rmsk exon 122696008 122696240 482 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "797"; repFamily "ERV1"; repLeft "557"; repStart "-5466"; chr12 rmsk exon 122696329 122696562 1150 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "1"; repStart "-6022"; chr12 rmsk exon 122696563 122696626 3076 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "636"; repStart "0"; chr12 rmsk exon 122696919 122697575 3076 - . gene_id "HUERSP1_12q24.31a"; transcript_id "HUERSP1_12q24.31a"; locus "HUERSP1_12q24.31a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0154"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "2"; repStart "-56"; ### HUERSP1_12q24.31b ### chr12 rmsk gene 122709248 122711007 . - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0155"; model_cov "660"; model_pct "10.5"; chr12 rmsk exon 122709248 122709442 1051 - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0155"; repClass "LTR"; repEnd "1311"; repFamily "ERV1"; repLeft "1131"; repStart "-4952"; chr12 rmsk exon 122709433 122709665 482 - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0155"; repClass "LTR"; repEnd "797"; repFamily "ERV1"; repLeft "557"; repStart "-5466"; chr12 rmsk exon 122709754 122709987 1150 - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0155"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "1"; repStart "-6022"; chr12 rmsk exon 122709988 122710049 3130 - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0155"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "636"; repStart "0"; chr12 rmsk exon 122710351 122711007 3130 - . gene_id "HUERSP1_12q24.31b"; transcript_id "HUERSP1_12q24.31b"; locus "HUERSP1_12q24.31b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0155"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "1"; repStart "-56"; ### HERVW_12q24.31 ### chr12 rmsk gene 123548418 123557734 . + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0237"; model_cov "6669"; model_pct "77.3"; chr12 rmsk exon 123548418 123549178 5594 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr12 rmsk exon 123549179 123549871 4854 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "-7935"; repStart "2"; chr12 rmsk exon 123550798 123551246 3315 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "1969"; repFamily "ERV1"; repLeft "-6657"; repStart "1537"; chr12 rmsk exon 123551236 123552230 41466 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "3283"; repFamily "ERV1"; repLeft "-5343"; repStart "2289"; chr12 rmsk exon 123552530 123555874 41466 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "6615"; repFamily "ERV1"; repLeft "-2011"; repStart "3284"; chr12 rmsk exon 123556184 123557126 41466 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "6616"; chr12 rmsk exon 123557117 123557408 2413 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr12 rmsk exon 123557409 123557734 5450 + . gene_id "HERVW_12q24.31"; transcript_id "HERVW_12q24.31"; locus "HERVW_12q24.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0237"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-463"; repStart "1"; ### HERVIP10FH_12q24.31 ### chr12 rmsk gene 124937514 124938971 . + . gene_id "HERVIP10FH_12q24.31"; transcript_id "HERVIP10FH_12q24.31"; locus "HERVIP10FH_12q24.31"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0129"; model_cov "954"; model_pct "18.7"; chr12 rmsk exon 124937514 124938486 3949 + . gene_id "HERVIP10FH_12q24.31"; transcript_id "HERVIP10FH_12q24.31"; locus "HERVIP10FH_12q24.31"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0129"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "4146"; chr12 rmsk exon 124938490 124938971 1753 + . gene_id "HERVIP10FH_12q24.31"; transcript_id "HERVIP10FH_12q24.31"; locus "HERVIP10FH_12q24.31"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0129"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "-169"; repStart "1"; ### MER4_12q24.31 ### chr12 rmsk gene 125059494 125064885 . - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0606"; model_cov "2895"; model_pct "43.9"; chr12 rmsk exon 125059494 125059959 3300 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0606"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 125059968 125060022 7927 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "6554"; repStart "-2"; chr12 rmsk exon 125060330 125061556 7927 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "6553"; repFamily "ERV1"; repLeft "5282"; repStart "-45"; chr12 rmsk exon 125061547 125061572 2350 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "2514"; repFamily "ERV1"; repLeft "2491"; repStart "-4084"; chr12 rmsk exon 125061879 125062004 2350 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "2490"; repFamily "ERV1"; repLeft "2365"; repStart "-4108"; chr12 rmsk exon 125062325 125062916 2919 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "1277"; repFamily "ERV1"; repLeft "505"; repStart "-5321"; chr12 rmsk exon 125062960 125063172 2919 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "806"; repFamily "ERV1"; repLeft "529"; repStart "-5792"; chr12 rmsk exon 125063726 125064047 2919 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0606"; repClass "LTR"; repEnd "528"; repFamily "ERV1"; repLeft "143"; repStart "-6070"; chr12 rmsk exon 125064663 125064885 1523 - . gene_id "MER4_12q24.31"; transcript_id "MER4_12q24.31"; locus "MER4_12q24.31"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0606"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "1"; repStart "-242"; ### ERVLE_12q24.31 ### chr12 rmsk gene 125164706 125166314 . - . gene_id "ERVLE_12q24.31"; transcript_id "ERVLE_12q24.31"; locus "ERVLE_12q24.31"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2790"; model_cov "1424"; model_pct "25.1"; chr12 rmsk exon 125164706 125165573 1596 - . gene_id "ERVLE_12q24.31"; transcript_id "ERVLE_12q24.31"; locus "ERVLE_12q24.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2790"; repClass "LTR"; repEnd "1493"; repFamily "ERVL"; repLeft "495"; repStart "-4174"; chr12 rmsk exon 125165872 125166314 1596 - . gene_id "ERVLE_12q24.31"; transcript_id "ERVLE_12q24.31"; locus "ERVLE_12q24.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2790"; repClass "LTR"; repEnd "541"; repFamily "ERVL"; repLeft "115"; repStart "-5126"; ### ERV316A3_12q24.32a ### chr12 rmsk gene 125686817 125689187 . + . gene_id "ERV316A3_12q24.32a"; transcript_id "ERV316A3_12q24.32a"; locus "ERV316A3_12q24.32a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2140"; model_cov "1914"; model_pct "36.6"; chr12 rmsk exon 125686817 125687741 3928 + . gene_id "ERV316A3_12q24.32a"; transcript_id "ERV316A3_12q24.32a"; locus "ERV316A3_12q24.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2140"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1153"; repStart "3181"; chr12 rmsk exon 125688197 125689187 3928 + . gene_id "ERV316A3_12q24.32a"; transcript_id "ERV316A3_12q24.32a"; locus "ERV316A3_12q24.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2140"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "-130"; repStart "4074"; ### HML5_12q24.32 ### chr12 rmsk gene 126030297 126034227 . + . gene_id "HML5_12q24.32"; transcript_id "HML5_12q24.32"; locus "HML5_12q24.32"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0093"; model_cov "3406"; model_pct "49.8"; chr12 rmsk exon 126030297 126030746 3503 + . gene_id "HML5_12q24.32"; transcript_id "HML5_12q24.32"; locus "HML5_12q24.32"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0093"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr12 rmsk exon 126030747 126031988 8566 + . gene_id "HML5_12q24.32"; transcript_id "HML5_12q24.32"; locus "HML5_12q24.32"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0093"; repClass "LTR"; repEnd "1260"; repFamily "ERVK"; repLeft "-5577"; repStart "1"; chr12 rmsk exon 126031976 126033734 12002 + . gene_id "HML5_12q24.32"; transcript_id "HML5_12q24.32"; locus "HML5_12q24.32"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0093"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "-1502"; repStart "3188"; chr12 rmsk exon 126033773 126034227 3517 + . gene_id "HML5_12q24.32"; transcript_id "HML5_12q24.32"; locus "HML5_12q24.32"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0093"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_12q24.32a ### chr12 rmsk gene 126052829 126054992 . + . gene_id "HERVL_12q24.32a"; transcript_id "HERVL_12q24.32a"; locus "HERVL_12q24.32a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1017"; model_cov "2180"; model_pct "38.6"; chr12 rmsk exon 126052829 126054992 16461 + . gene_id "HERVL_12q24.32a"; transcript_id "HERVL_12q24.32a"; locus "HERVL_12q24.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1017"; repClass "LTR"; repEnd "5635"; repFamily "ERVL"; repLeft "-19"; repStart "3455"; ### HERVL_12q24.32b ### chr12 rmsk gene 126422498 126423602 . - . gene_id "HERVL_12q24.32b"; transcript_id "HERVL_12q24.32b"; locus "HERVL_12q24.32b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1018"; model_cov "563"; model_pct "10.0"; chr12 rmsk exon 126422498 126423058 1918 - . gene_id "HERVL_12q24.32b"; transcript_id "HERVL_12q24.32b"; locus "HERVL_12q24.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1018"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr12 rmsk exon 126423059 126423602 2950 - . gene_id "HERVL_12q24.32b"; transcript_id "HERVL_12q24.32b"; locus "HERVL_12q24.32b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1018"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5091"; repStart "0"; ### HERVIP10F_12q24.32 ### chr12 rmsk gene 126612915 126615578 . - . gene_id "HERVIP10F_12q24.32"; transcript_id "HERVIP10F_12q24.32"; locus "HERVIP10F_12q24.32"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0087"; model_cov "2044"; model_pct "26.4"; chr12 rmsk exon 126612915 126613433 4076 - . gene_id "HERVIP10F_12q24.32"; transcript_id "HERVIP10F_12q24.32"; locus "HERVIP10F_12q24.32"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0087"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr12 rmsk exon 126613435 126614769 7233 - . gene_id "HERVIP10F_12q24.32"; transcript_id "HERVIP10F_12q24.32"; locus "HERVIP10F_12q24.32"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0087"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "6377"; repStart "-2"; chr12 rmsk exon 126614788 126615578 1676 - . gene_id "HERVIP10F_12q24.32"; transcript_id "HERVIP10F_12q24.32"; locus "HERVIP10F_12q24.32"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0087"; repClass "LTR"; repEnd "6325"; repFamily "ERV1"; repLeft "5639"; repStart "-1412"; ### HERVI_12q24.32 ### chr12 rmsk gene 126615600 126618536 . - . gene_id "HERVI_12q24.32"; transcript_id "HERVI_12q24.32"; locus "HERVI_12q24.32"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0027"; model_cov "1493"; model_pct "19.2"; chr12 rmsk exon 126615600 126615691 344 - . gene_id "HERVI_12q24.32"; transcript_id "HERVI_12q24.32"; locus "HERVI_12q24.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0027"; repClass "LTR"; repEnd "5416"; repFamily "ERV1"; repLeft "5331"; repStart "-2369"; chr12 rmsk exon 126615785 126616311 1255 - . gene_id "HERVI_12q24.32"; transcript_id "HERVI_12q24.32"; locus "HERVI_12q24.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0027"; repClass "LTR"; repEnd "4638"; repFamily "ERV1"; repLeft "4224"; repStart "-3147"; chr12 rmsk exon 126616926 126618019 2363 - . gene_id "HERVI_12q24.32"; transcript_id "HERVI_12q24.32"; locus "HERVI_12q24.32"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0027"; repClass "LTR"; repEnd "999"; repFamily "ERV1"; repLeft "5"; repStart "-6786"; chr12 rmsk exon 126618024 126618536 3719 - . gene_id "HERVI_12q24.32"; transcript_id "HERVI_12q24.32"; locus "HERVI_12q24.32"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0027"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_12q24.32b ### chr12 rmsk gene 126677307 126680940 . - . gene_id "ERV316A3_12q24.32b"; transcript_id "ERV316A3_12q24.32b"; locus "ERV316A3_12q24.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2141"; model_cov "3204"; model_pct "61.3"; chr12 rmsk exon 126677307 126677736 1000 - . gene_id "ERV316A3_12q24.32b"; transcript_id "ERV316A3_12q24.32b"; locus "ERV316A3_12q24.32b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2141"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "53"; repStart "-2"; chr12 rmsk exon 126677738 126679915 8602 - . gene_id "ERV316A3_12q24.32b"; transcript_id "ERV316A3_12q24.32b"; locus "ERV316A3_12q24.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2141"; repClass "LTR"; repEnd "5197"; repFamily "ERVL"; repLeft "3013"; repStart "-29"; chr12 rmsk exon 126679951 126680940 8602 - . gene_id "ERV316A3_12q24.32b"; transcript_id "ERV316A3_12q24.32b"; locus "ERV316A3_12q24.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2141"; repClass "LTR"; repEnd "3012"; repFamily "ERVL"; repLeft "1992"; repStart "-2214"; ### HERVH_12q24.32 ### chr12 rmsk gene 127153655 127158069 . + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0971"; model_cov "3745"; model_pct "48.6"; chr12 rmsk exon 127153655 127155804 12404 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "1522"; chr12 rmsk exon 127155799 127156530 2409 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "-3184"; repStart "3806"; chr12 rmsk exon 127156531 127156989 2703 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6489"; chr12 rmsk exon 127156984 127157042 282 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr12 rmsk exon 127157044 127157520 2588 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "7621"; repFamily "ERV1"; repLeft "-92"; repStart "7173"; chr12 rmsk exon 127157602 127158069 3510 + . gene_id "HERVH_12q24.32"; transcript_id "HERVH_12q24.32"; locus "HERVH_12q24.32"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_0971"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_12q24.32c ### chr12 rmsk gene 127446249 127448062 . + . gene_id "ERV316A3_12q24.32c"; transcript_id "ERV316A3_12q24.32c"; locus "ERV316A3_12q24.32c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2142"; model_cov "1298"; model_pct "24.8"; chr12 rmsk exon 127446249 127446472 340 + . gene_id "ERV316A3_12q24.32c"; transcript_id "ERV316A3_12q24.32c"; locus "ERV316A3_12q24.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2142"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2175"; repStart "2681"; chr12 rmsk exon 127446479 127446813 910 + . gene_id "ERV316A3_12q24.32c"; transcript_id "ERV316A3_12q24.32c"; locus "ERV316A3_12q24.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2142"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "-2143"; repStart "2696"; chr12 rmsk exon 127447177 127447653 660 + . gene_id "ERV316A3_12q24.32c"; transcript_id "ERV316A3_12q24.32c"; locus "ERV316A3_12q24.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2142"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "4682"; chr12 rmsk exon 127447663 127448062 893 + . gene_id "ERV316A3_12q24.32c"; transcript_id "ERV316A3_12q24.32c"; locus "ERV316A3_12q24.32c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2142"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### HERVE_12q24.32 ### chr12 rmsk gene 127480879 127489548 . + . gene_id "HERVE_12q24.32"; transcript_id "HERVE_12q24.32"; locus "HERVE_12q24.32"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0126"; model_cov "7810"; model_pct "100.0"; chr12 rmsk exon 127480879 127481296 1532 + . gene_id "HERVE_12q24.32"; transcript_id "HERVE_12q24.32"; locus "HERVE_12q24.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 127481297 127489124 46715 + . gene_id "HERVE_12q24.32"; transcript_id "HERVE_12q24.32"; locus "HERVE_12q24.32"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0126"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 127489125 127489548 1521 + . gene_id "HERVE_12q24.32"; transcript_id "HERVE_12q24.32"; locus "HERVE_12q24.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_12q24.32 ### chr12 rmsk gene 127610367 127618173 . + . gene_id "HERV9_12q24.32"; transcript_id "HERV9_12q24.32"; locus "HERV9_12q24.32"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0147"; model_cov "7012"; model_pct "83.1"; chr12 rmsk exon 127610367 127610791 3032 + . gene_id "HERV9_12q24.32"; transcript_id "HERV9_12q24.32"; locus "HERV9_12q24.32"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0147"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 127610812 127616641 38404 + . gene_id "HERV9_12q24.32"; transcript_id "HERV9_12q24.32"; locus "HERV9_12q24.32"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0147"; repClass "LTR"; repEnd "5977"; repFamily "ERV1"; repLeft "-2459"; repStart "29"; chr12 rmsk exon 127616629 127617697 8659 + . gene_id "HERV9_12q24.32"; transcript_id "HERV9_12q24.32"; locus "HERV9_12q24.32"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0147"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7372"; chr12 rmsk exon 127617698 127618173 3458 + . gene_id "HERV9_12q24.32"; transcript_id "HERV9_12q24.32"; locus "HERV9_12q24.32"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0147"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_12q24.32d ### chr12 rmsk gene 127678782 127682197 . - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2144"; model_cov "2105"; model_pct "40.3"; chr12 rmsk exon 127678782 127679179 1153 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "49"; repStart "0"; chr12 rmsk exon 127679221 127679686 711 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "4715"; repStart "-2"; chr12 rmsk exon 127679683 127679954 1122 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "2218"; repFamily "ERVL"; repLeft "1955"; repStart "-3008"; chr12 rmsk exon 127680488 127680815 1122 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "1954"; repFamily "ERVL"; repLeft "1582"; repStart "-3272"; chr12 rmsk exon 127681138 127681980 1122 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "694"; repStart "-3645"; chr12 rmsk exon 127682125 127682197 293 - . gene_id "ERV316A3_12q24.32d"; transcript_id "ERV316A3_12q24.32d"; locus "ERV316A3_12q24.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2144"; repClass "LTR"; repEnd "502"; repFamily "ERVL"; repLeft "428"; repStart "-4724"; ### ERVLE_12q24.32 ### chr12 rmsk gene 127893138 127894182 . - . gene_id "ERVLE_12q24.32"; transcript_id "ERVLE_12q24.32"; locus "ERVLE_12q24.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2791"; model_cov "773"; model_pct "13.6"; chr12 rmsk exon 127893138 127893594 709 - . gene_id "ERVLE_12q24.32"; transcript_id "ERVLE_12q24.32"; locus "ERVLE_12q24.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2791"; repClass "LTR"; repEnd "5534"; repFamily "ERVL"; repLeft "5065"; repStart "-133"; chr12 rmsk exon 127893878 127894182 709 - . gene_id "ERVLE_12q24.32"; transcript_id "ERVLE_12q24.32"; locus "ERVLE_12q24.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2791"; repClass "LTR"; repEnd "5064"; repFamily "ERVL"; repLeft "4760"; repStart "-603"; ### ERVLE_12q24.33 ### chr12 rmsk gene 128712519 128714677 . - . gene_id "ERVLE_12q24.33"; transcript_id "ERVLE_12q24.33"; locus "ERVLE_12q24.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2792"; model_cov "1526"; model_pct "26.9"; chr12 rmsk exon 128712519 128713176 679 - . gene_id "ERVLE_12q24.33"; transcript_id "ERVLE_12q24.33"; locus "ERVLE_12q24.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2792"; repClass "LTR"; repEnd "4219"; repFamily "ERVL"; repLeft "3408"; repStart "-1448"; chr12 rmsk exon 128713923 128714547 1104 - . gene_id "ERVLE_12q24.33"; transcript_id "ERVLE_12q24.33"; locus "ERVLE_12q24.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2792"; repClass "LTR"; repEnd "3537"; repFamily "ERVL"; repLeft "2922"; repStart "-2130"; chr12 rmsk exon 128714576 128714677 301 - . gene_id "ERVLE_12q24.33"; transcript_id "ERVLE_12q24.33"; locus "ERVLE_12q24.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2792"; repClass "LTR"; repEnd "3025"; repFamily "ERVL"; repLeft "2925"; repStart "-2642"; ### PRIMA41_12q24.33a ### chr12 rmsk gene 129343952 129345711 . + . gene_id "PRIMA41_12q24.33a"; transcript_id "PRIMA41_12q24.33a"; locus "PRIMA41_12q24.33a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0100"; model_cov "1411"; model_pct "18.2"; chr12 rmsk exon 129343952 129344248 2486 + . gene_id "PRIMA41_12q24.33a"; transcript_id "PRIMA41_12q24.33a"; locus "PRIMA41_12q24.33a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0100"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "224"; chr12 rmsk exon 129344337 129345711 8644 + . gene_id "PRIMA41_12q24.33a"; transcript_id "PRIMA41_12q24.33a"; locus "PRIMA41_12q24.33a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0100"; repClass "LTR"; repEnd "1415"; repFamily "ERV1"; repLeft "-6341"; repStart "4"; ### PRIMA41_12q24.33b ### chr12 rmsk gene 129348737 129352445 . + . gene_id "PRIMA41_12q24.33b"; transcript_id "PRIMA41_12q24.33b"; locus "PRIMA41_12q24.33b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0101"; model_cov "3331"; model_pct "42.9"; chr12 rmsk exon 129348737 129349192 3248 + . gene_id "PRIMA41_12q24.33b"; transcript_id "PRIMA41_12q24.33b"; locus "PRIMA41_12q24.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0101"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "2568"; chr12 rmsk exon 129349188 129349419 1640 + . gene_id "PRIMA41_12q24.33b"; transcript_id "PRIMA41_12q24.33b"; locus "PRIMA41_12q24.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0101"; repClass "LTR"; repEnd "4623"; repFamily "ERV1"; repLeft "-3133"; repStart "4394"; chr12 rmsk exon 129349420 129352036 18885 + . gene_id "PRIMA41_12q24.33b"; transcript_id "PRIMA41_12q24.33b"; locus "PRIMA41_12q24.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0101"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "5141"; chr12 rmsk exon 129352037 129352445 3145 + . gene_id "PRIMA41_12q24.33b"; transcript_id "PRIMA41_12q24.33b"; locus "PRIMA41_12q24.33b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0101"; repClass "LTR"; repEnd "414"; repFamily "ERV1"; repLeft "-107"; repStart "1"; ### HUERSP1_12q24.33 ### chr12 rmsk gene 129666011 129670771 . + . gene_id "HUERSP1_12q24.33"; transcript_id "HUERSP1_12q24.33"; locus "HUERSP1_12q24.33"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0156"; model_cov "3612"; model_pct "57.7"; chr12 rmsk exon 129666011 129669422 26402 + . gene_id "HUERSP1_12q24.33"; transcript_id "HUERSP1_12q24.33"; locus "HUERSP1_12q24.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0156"; repClass "LTR"; repEnd "5965"; repFamily "ERV1"; repLeft "-298"; repStart "2650"; chr12 rmsk exon 129669754 129670089 26402 + . gene_id "HUERSP1_12q24.33"; transcript_id "HUERSP1_12q24.33"; locus "HUERSP1_12q24.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0156"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5966"; chr12 rmsk exon 129670090 129670771 5487 + . gene_id "HUERSP1_12q24.33"; transcript_id "HUERSP1_12q24.33"; locus "HUERSP1_12q24.33"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0156"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFRD_12q24.33 ### chr12 rmsk gene 130768071 130768968 . + . gene_id "HERVFRD_12q24.33"; transcript_id "HERVFRD_12q24.33"; locus "HERVFRD_12q24.33"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0139"; model_cov "734"; model_pct "10.2"; chr12 rmsk exon 130768071 130768267 1228 + . gene_id "HERVFRD_12q24.33"; transcript_id "HERVFRD_12q24.33"; locus "HERVFRD_12q24.33"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0139"; repClass "LTR"; repEnd "696"; repFamily "ERV1"; repLeft "-38"; repStart "499"; chr12 rmsk exon 130768314 130768968 2378 + . gene_id "HERVFRD_12q24.33"; transcript_id "HERVFRD_12q24.33"; locus "HERVFRD_12q24.33"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0139"; repClass "LTR"; repEnd "735"; repFamily "ERV1"; repLeft "-6470"; repStart "1"; ### MER4_12q24.33 ### chr12 rmsk gene 131318688 131325484 . - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0609"; model_cov "6996"; model_pct "100.0"; chr12 rmsk exon 131318688 131319133 3309 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0609"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 131319142 131321789 15057 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3840"; repStart "-2"; chr12 rmsk exon 131321794 131322673 3760 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "2737"; repStart "-2919"; chr12 rmsk exon 131322939 131323619 3760 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "2468"; repFamily "ERV1"; repLeft "1764"; repStart "-4130"; chr12 rmsk exon 131323602 131324553 5476 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "3535"; repFamily "ERV1"; repLeft "1897"; repStart "-3063"; chr12 rmsk exon 131324573 131324910 1305 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "2471"; repFamily "ERV1"; repLeft "2112"; repStart "-4127"; chr12 rmsk exon 131324988 131325069 336 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "-644"; repFamily "ERV1"; repLeft "-722"; repStart "-7242"; chr12 rmsk exon 131325057 131325484 1773 - . gene_id "MER4_12q24.33"; transcript_id "MER4_12q24.33"; locus "MER4_12q24.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0609"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "167"; repStart "-5912"; ### HERV9_12q24.33a ### chr12 rmsk gene 131334871 131340111 . + . gene_id "HERV9_12q24.33a"; transcript_id "HERV9_12q24.33a"; locus "HERV9_12q24.33a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0148"; model_cov "4803"; model_pct "56.9"; chr12 rmsk exon 131334871 131335398 3816 + . gene_id "HERV9_12q24.33a"; transcript_id "HERV9_12q24.33a"; locus "HERV9_12q24.33a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0148"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr12 rmsk exon 131335420 131340111 28704 + . gene_id "HERV9_12q24.33a"; transcript_id "HERV9_12q24.33a"; locus "HERV9_12q24.33a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0148"; repClass "LTR"; repEnd "4833"; repFamily "ERV1"; repLeft "-3603"; repStart "30"; ### HERV9_12q24.33b ### chr12 rmsk gene 131341947 131344796 . - . gene_id "HERV9_12q24.33b"; transcript_id "HERV9_12q24.33b"; locus "HERV9_12q24.33b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0149"; model_cov "2286"; model_pct "27.1"; chr12 rmsk exon 131341947 131342532 4618 - . gene_id "HERV9_12q24.33b"; transcript_id "HERV9_12q24.33b"; locus "HERV9_12q24.33b"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0149"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr12 rmsk exon 131342533 131344796 17656 - . gene_id "HERV9_12q24.33b"; transcript_id "HERV9_12q24.33b"; locus "HERV9_12q24.33b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0149"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "6150"; repStart "0"; ### HERVW_12q24.33a ### chr12 rmsk gene 131873229 131875193 . - . gene_id "HERVW_12q24.33a"; transcript_id "HERVW_12q24.33a"; locus "HERVW_12q24.33a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0238"; model_cov "1296"; model_pct "15.0"; chr12 rmsk exon 131873229 131873966 5137 - . gene_id "HERVW_12q24.33a"; transcript_id "HERVW_12q24.33a"; locus "HERVW_12q24.33a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0238"; repClass "LTR"; repEnd "731"; repFamily "ERV1"; repLeft "1"; repStart "-49"; chr12 rmsk exon 131873967 131874264 2229 - . gene_id "HERVW_12q24.33a"; transcript_id "HERVW_12q24.33a"; locus "HERVW_12q24.33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0238"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8329"; repStart "0"; chr12 rmsk exon 131874277 131875193 23141 - . gene_id "HERVW_12q24.33a"; transcript_id "HERVW_12q24.33a"; locus "HERVW_12q24.33a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0238"; repClass "LTR"; repEnd "6023"; repFamily "ERV1"; repLeft "5024"; repStart "-2603"; ### HERVW_12q24.33b ### chr12 rmsk gene 131875335 131880952 . - . gene_id "HERVW_12q24.33b"; transcript_id "HERVW_12q24.33b"; locus "HERVW_12q24.33b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0239"; model_cov "4605"; model_pct "53.4"; chr12 rmsk exon 131875335 131875890 23141 - . gene_id "HERVW_12q24.33b"; transcript_id "HERVW_12q24.33b"; locus "HERVW_12q24.33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0239"; repClass "LTR"; repEnd "6023"; repFamily "ERV1"; repLeft "5415"; repStart "-2603"; chr12 rmsk exon 131876190 131878170 23141 - . gene_id "HERVW_12q24.33b"; transcript_id "HERVW_12q24.33b"; locus "HERVW_12q24.33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0239"; repClass "LTR"; repEnd "4414"; repFamily "ERV1"; repLeft "2430"; repStart "-4212"; chr12 rmsk exon 131878156 131880191 12325 - . gene_id "HERVW_12q24.33b"; transcript_id "HERVW_12q24.33b"; locus "HERVW_12q24.33b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0239"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "1"; repStart "-6612"; chr12 rmsk exon 131880192 131880952 5708 - . gene_id "HERVW_12q24.33b"; transcript_id "HERVW_12q24.33b"; locus "HERVW_12q24.33b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0239"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_12q24.33 ### chr12 rmsk gene 132339118 132340999 . - . gene_id "ERVL_12q24.33"; transcript_id "ERVL_12q24.33"; locus "ERVL_12q24.33"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0339"; model_cov "1426"; model_pct "24.8"; chr12 rmsk exon 132339118 132339911 2081 - . gene_id "ERVL_12q24.33"; transcript_id "ERVL_12q24.33"; locus "ERVL_12q24.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0339"; repClass "LTR"; repEnd "2668"; repFamily "ERVL"; repLeft "1841"; repStart "-3089"; chr12 rmsk exon 132340432 132340999 1190 - . gene_id "ERVL_12q24.33"; transcript_id "ERVL_12q24.33"; locus "ERVL_12q24.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0339"; repClass "LTR"; repEnd "1620"; repFamily "ERVL"; repLeft "1021"; repStart "-4137"; ### HERVH_12q24.33a ### chr12 rmsk gene 132889511 132894206 . + . gene_id "HERVH_12q24.33a"; transcript_id "HERVH_12q24.33a"; locus "HERVH_12q24.33a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0972"; model_cov "4016"; model_pct "52.1"; chr12 rmsk exon 132889511 132889969 3335 + . gene_id "HERVH_12q24.33a"; transcript_id "HERVH_12q24.33a"; locus "HERVH_12q24.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0972"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr12 rmsk exon 132889972 132894206 15966 + . gene_id "HERVH_12q24.33a"; transcript_id "HERVH_12q24.33a"; locus "HERVH_12q24.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0972"; repClass "LTR"; repEnd "5201"; repFamily "ERV1"; repLeft "-2512"; repStart "1185"; ### HERVH_12q24.33b ### chr12 rmsk gene 132894516 132898499 . + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0973"; model_cov "3511"; model_pct "45.5"; chr12 rmsk exon 132894516 132894683 2716 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "4180"; repFamily "ERV1"; repLeft "-3533"; repStart "4015"; chr12 rmsk exon 132894678 132895075 3073 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6283"; chr12 rmsk exon 132895076 132895153 416 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6678"; repFamily "ERV1"; repLeft "-1035"; repStart "6600"; chr12 rmsk exon 132895156 132895236 524 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895237 132895317 534 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895318 132895398 534 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895399 132895479 529 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895480 132895557 416 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6678"; repFamily "ERV1"; repLeft "-1035"; repStart "6600"; chr12 rmsk exon 132895560 132895640 524 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895641 132895721 525 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895722 132895802 498 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895803 132895882 438 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895883 132895963 521 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132895964 132896044 509 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896045 132896125 507 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896126 132896206 520 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896207 132896286 449 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896287 132896367 531 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896368 132896448 549 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896449 132896528 482 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896529 132896609 517 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896610 132896690 514 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896691 132896771 514 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896772 132896851 525 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896852 132896931 514 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "6680"; repFamily "ERV1"; repLeft "-1033"; repStart "6600"; chr12 rmsk exon 132896932 132898048 8298 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "6600"; chr12 rmsk exon 132898049 132898499 3449 + . gene_id "HERVH_12q24.33b"; transcript_id "HERVH_12q24.33b"; locus "HERVH_12q24.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0973"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_12q24.33 ### chr12 rmsk gene 133063358 133066776 . - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2146"; model_cov "1167"; model_pct "22.3"; chr12 rmsk exon 133063358 133063777 648 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "25"; repStart "0"; chr12 rmsk exon 133063804 133064355 1387 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4623"; repStart "0"; chr12 rmsk exon 133064925 133065292 1092 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "2433"; repFamily "ERVL"; repLeft "2010"; repStart "-2793"; chr12 rmsk exon 133066048 133066395 699 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "62"; repStart "-8"; chr12 rmsk exon 133066498 133066623 373 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "474"; repFamily "ERVL"; repLeft "333"; repStart "-4752"; chr12 rmsk exon 133066680 133066776 328 - . gene_id "ERV316A3_12q24.33"; transcript_id "ERV316A3_12q24.33"; locus "ERV316A3_12q24.33"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2146"; repClass "LTR"; repEnd "225"; repFamily "ERVL"; repLeft "132"; repStart "-197"; ### HML2_12q24.33 ### chr12 rmsk gene 133090536 133096478 . - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0097"; model_cov "2905"; model_pct "38.5"; chr12 rmsk exon 133090536 133091545 8594 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 133091560 133093500 12073 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "7522"; repFamily "ERVK"; repLeft "5587"; repStart "-14"; chr12 rmsk exon 133093506 133093784 2003 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "5187"; repStart "-2074"; chr12 rmsk exon 133093979 133095471 4356 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840"; chr12 rmsk exon 133095472 133096478 8541 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_13q11 ### chr13 rmsk gene 18205804 18207651 . + . gene_id "ERVLE_13q11"; transcript_id "ERVLE_13q11"; locus "ERVLE_13q11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2795"; model_cov "805"; model_pct "14.2"; chr13 rmsk exon 18205804 18206399 1574 + . gene_id "ERVLE_13q11"; transcript_id "ERVLE_13q11"; locus "ERVLE_13q11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2795"; repClass "LTR"; repEnd "4812"; repFamily "ERVL"; repLeft "-855"; repStart "4187"; chr13 rmsk exon 18207480 18207651 397 + . gene_id "ERVLE_13q11"; transcript_id "ERVLE_13q11"; locus "ERVLE_13q11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2795"; repClass "LTR"; repEnd "5018"; repFamily "ERVL"; repLeft "-649"; repStart "4838"; ### HERVIP10F_13q11 ### chr13 rmsk gene 18422944 18431568 . + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0088"; model_cov "7199"; model_pct "93.0"; chr13 rmsk exon 18422944 18423457 2487 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "3"; chr13 rmsk exon 18423471 18425387 30217 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "1902"; repFamily "ERV1"; repLeft "-5835"; repStart "-47"; chr13 rmsk exon 18425682 18429038 30217 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "-2635"; repStart "1778"; chr13 rmsk exon 18429031 18430957 11994 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "-7"; repStart "5804"; chr13 rmsk exon 18431035 18431201 1875 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "245"; repFamily "ERV1"; repLeft "-364"; repStart "1"; chr13 rmsk exon 18431252 18431568 1875 + . gene_id "HERVIP10F_13q11"; transcript_id "HERVIP10F_13q11"; locus "HERVIP10F_13q11"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0088"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "184"; ### MER4_13q12.11 ### chr13 rmsk gene 19110920 19113214 . - . gene_id "MER4_13q12.11"; transcript_id "MER4_13q12.11"; locus "MER4_13q12.11"; category "internal"; intModel "MER4-int"; locid "MER4-int_0610"; model_cov "1280"; model_pct "19.4"; chr13 rmsk exon 19110920 19111392 3759 - . gene_id "MER4_13q12.11"; transcript_id "MER4_13q12.11"; locus "MER4_13q12.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0610"; repClass "LTR"; repEnd "2521"; repFamily "ERV1"; repLeft "2011"; repStart "-4077"; chr13 rmsk exon 19112413 19112653 3759 - . gene_id "MER4_13q12.11"; transcript_id "MER4_13q12.11"; locus "MER4_13q12.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0610"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "1776"; repStart "-4588"; chr13 rmsk exon 19112622 19112970 925 - . gene_id "MER4_13q12.11"; transcript_id "MER4_13q12.11"; locus "MER4_13q12.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0610"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "1005"; repStart "-5314"; chr13 rmsk exon 19112956 19113214 1182 - . gene_id "MER4_13q12.11"; transcript_id "MER4_13q12.11"; locus "MER4_13q12.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0610"; repClass "LTR"; repEnd "-1184"; repFamily "ERV1"; repLeft "-1441"; repStart "-7782"; ### HML3_13q12.11a ### chr13 rmsk gene 19626322 19631230 . + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0180"; model_cov "4846"; model_pct "80.5"; chr13 rmsk exon 19626322 19626835 4376 + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0180"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr13 rmsk exon 19626836 19627406 4527 + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0180"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr13 rmsk exon 19627408 19629308 14393 + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0180"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "1125"; chr13 rmsk exon 19629295 19630711 11511 + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0180"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chr13 rmsk exon 19630712 19631230 4406 + . gene_id "HML3_13q12.11a"; transcript_id "HML3_13q12.11a"; locus "HML3_13q12.11a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0180"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_13q12.11a ### chr13 rmsk gene 19909783 19915040 . + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1334"; model_cov "3908"; model_pct "68.4"; chr13 rmsk exon 19909783 19909933 2484 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "-4674"; repStart "901"; chr13 rmsk exon 19910239 19910518 2484 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "1317"; repFamily "ERVL"; repLeft "-4397"; repStart "1041"; chr13 rmsk exon 19910644 19911044 19254 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "1746"; repFamily "ERVL"; repLeft "-3968"; repStart "1306"; chr13 rmsk exon 19911359 19912292 19254 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "2668"; repFamily "ERVL"; repLeft "-3046"; repStart "1747"; chr13 rmsk exon 19912634 19913442 19254 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "3479"; repFamily "ERVL"; repLeft "-2235"; repStart "2669"; chr13 rmsk exon 19913747 19915040 19254 + . gene_id "ERVLB4_13q12.11a"; transcript_id "ERVLB4_13q12.11a"; locus "ERVLB4_13q12.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1334"; repClass "LTR"; repEnd "4802"; repFamily "ERVL"; repLeft "-912"; repStart "3480"; ### LTR19_13q12.11 ### chr13 rmsk gene 20285997 20286782 . + . gene_id "LTR19_13q12.11"; transcript_id "LTR19_13q12.11"; locus "LTR19_13q12.11"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0041"; model_cov "1087"; model_pct "19.5"; chr13 rmsk exon 20285997 20286111 697 + . gene_id "LTR19_13q12.11"; transcript_id "LTR19_13q12.11"; locus "LTR19_13q12.11"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0041"; repClass "LTR"; repEnd "768"; repFamily "ERV1"; repLeft "-4818"; repStart "646"; chr13 rmsk exon 20286116 20286782 2506 + . gene_id "LTR19_13q12.11"; transcript_id "LTR19_13q12.11"; locus "LTR19_13q12.11"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0041"; repClass "LTR"; repEnd "1704"; repFamily "ERV1"; repLeft "-3882"; repStart "739"; ### HUERSP3B_13q12.11 ### chr13 rmsk gene 20287514 20288927 . + . gene_id "HUERSP3B_13q12.11"; transcript_id "HUERSP3B_13q12.11"; locus "HUERSP3B_13q12.11"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0104"; model_cov "1744"; model_pct "23.5"; chr13 rmsk exon 20287514 20288724 2511 + . gene_id "HUERSP3B_13q12.11"; transcript_id "HUERSP3B_13q12.11"; locus "HUERSP3B_13q12.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0104"; repClass "LTR"; repEnd "6239"; repFamily "ERV1"; repLeft "-1179"; repStart "4693"; chr13 rmsk exon 20288727 20288927 1436 + . gene_id "HUERSP3B_13q12.11"; transcript_id "HUERSP3B_13q12.11"; locus "HUERSP3B_13q12.11"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0104"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "7219"; ### ERVLB4_13q12.11b ### chr13 rmsk gene 20317636 20319602 . + . gene_id "ERVLB4_13q12.11b"; transcript_id "ERVLB4_13q12.11b"; locus "ERVLB4_13q12.11b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1335"; model_cov "1627"; model_pct "28.5"; chr13 rmsk exon 20317636 20318690 6536 + . gene_id "ERVLB4_13q12.11b"; transcript_id "ERVLB4_13q12.11b"; locus "ERVLB4_13q12.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1335"; repClass "LTR"; repEnd "4839"; repFamily "ERVL"; repLeft "-875"; repStart "3760"; chr13 rmsk exon 20318691 20319230 3102 + . gene_id "ERVLB4_13q12.11b"; transcript_id "ERVLB4_13q12.11b"; locus "ERVLB4_13q12.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1335"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5166"; chr13 rmsk exon 20319231 20319602 1435 + . gene_id "ERVLB4_13q12.11b"; transcript_id "ERVLB4_13q12.11b"; locus "ERVLB4_13q12.11b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1335"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP2_13q12.11 ### chr13 rmsk gene 20324423 20326536 . + . gene_id "HUERSP2_13q12.11"; transcript_id "HUERSP2_13q12.11"; locus "HUERSP2_13q12.11"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0099"; model_cov "873"; model_pct "28.3"; chr13 rmsk exon 20324423 20324667 2552 + . gene_id "HUERSP2_13q12.11"; transcript_id "HUERSP2_13q12.11"; locus "HUERSP2_13q12.11"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0099"; repClass "LTR"; repEnd "2424"; repFamily "ERV1"; repLeft "-664"; repStart "2187"; chr13 rmsk exon 20324965 20325537 2786 + . gene_id "HUERSP2_13q12.11"; transcript_id "HUERSP2_13q12.11"; locus "HUERSP2_13q12.11"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0099"; repClass "LTR"; repEnd "3061"; repFamily "ERV1"; repLeft "-27"; repStart "2425"; chr13 rmsk exon 20325752 20326536 4570 + . gene_id "HUERSP2_13q12.11"; transcript_id "HUERSP2_13q12.11"; locus "HUERSP2_13q12.11"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0099"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "41"; ### HML3_13q12.11b ### chr13 rmsk gene 20678247 20685411 . - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0181"; model_cov "6779"; model_pct "100.0"; chr13 rmsk exon 20678247 20678766 3815 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr13 rmsk exon 20678767 20680245 2640 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "5956"; repFamily "ERVK"; repLeft "3779"; repStart "-65"; chr13 rmsk exon 20680320 20680472 438 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "4195"; repFamily "ERVK"; repLeft "4043"; repStart "-1826"; chr13 rmsk exon 20680452 20683998 26628 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "5191"; repFamily "ERVK"; repLeft "1638"; repStart "-830"; chr13 rmsk exon 20683985 20684907 3547 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "823"; repFamily "ERVK"; repLeft "-74"; repStart "-5198"; chr13 rmsk exon 20684908 20685411 3887 - . gene_id "HML3_13q12.11b"; transcript_id "HML3_13q12.11b"; locus "HML3_13q12.11b"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0181"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_13q12.11 ### chr13 rmsk gene 21311505 21314276 . + . gene_id "ERVLE_13q12.11"; transcript_id "ERVLE_13q12.11"; locus "ERVLE_13q12.11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2797"; model_cov "2963"; model_pct "52.3"; chr13 rmsk exon 21311505 21314276 2449 + . gene_id "ERVLE_13q12.11"; transcript_id "ERVLE_13q12.11"; locus "ERVLE_13q12.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2797"; repClass "LTR"; repEnd "4123"; repFamily "ERVL"; repLeft "-1544"; repStart "1160"; ### HERVIP10FH_13q12.11 ### chr13 rmsk gene 21588022 21590048 . + . gene_id "HERVIP10FH_13q12.11"; transcript_id "HERVIP10FH_13q12.11"; locus "HERVIP10FH_13q12.11"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0133"; model_cov "1893"; model_pct "37.1"; chr13 rmsk exon 21588022 21589513 9958 + . gene_id "HERVIP10FH_13q12.11"; transcript_id "HERVIP10FH_13q12.11"; locus "HERVIP10FH_13q12.11"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0133"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "3209"; chr13 rmsk exon 21589514 21590048 3389 + . gene_id "HERVIP10FH_13q12.11"; transcript_id "HERVIP10FH_13q12.11"; locus "HERVIP10FH_13q12.11"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0133"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_13q12.12a ### chr13 rmsk gene 22881697 22883238 . + . gene_id "MER4_13q12.12a"; transcript_id "MER4_13q12.12a"; locus "MER4_13q12.12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0612"; model_cov "867"; model_pct "13.1"; chr13 rmsk exon 22881697 22882079 2113 + . gene_id "MER4_13q12.12a"; transcript_id "MER4_13q12.12a"; locus "MER4_13q12.12a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0612"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-18"; repStart "55"; chr13 rmsk exon 22882080 22882268 786 + . gene_id "MER4_13q12.12a"; transcript_id "MER4_13q12.12a"; locus "MER4_13q12.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0612"; repClass "LTR"; repEnd "2388"; repFamily "ERV1"; repLeft "-4210"; repStart "2212"; chr13 rmsk exon 22882266 22882464 3613 + . gene_id "MER4_13q12.12a"; transcript_id "MER4_13q12.12a"; locus "MER4_13q12.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0612"; repClass "LTR"; repEnd "1991"; repFamily "ERV1"; repLeft "-4607"; repStart "1803"; chr13 rmsk exon 22882779 22883238 3613 + . gene_id "MER4_13q12.12a"; transcript_id "MER4_13q12.12a"; locus "MER4_13q12.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0612"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1992"; ### HARLEQUIN_13q12.12 ### chr13 rmsk gene 22883560 22889847 . + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0145"; model_cov "5435"; model_pct "78.8"; chr13 rmsk exon 22883560 22884029 3740 + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0145"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 22884030 22884897 5360 + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0145"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "-6003"; repStart "1"; chr13 rmsk exon 22884884 22885841 6364 + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0145"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "-4323"; repStart "1572"; chr13 rmsk exon 22885843 22889378 22802 + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0145"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "3353"; chr13 rmsk exon 22889379 22889847 3811 + . gene_id "HARLEQUIN_13q12.12"; transcript_id "HARLEQUIN_13q12.12"; locus "HARLEQUIN_13q12.12"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0145"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_13q12.12b ### chr13 rmsk gene 22890041 22893203 . + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0613"; model_cov "2103"; model_pct "31.9"; chr13 rmsk exon 22890041 22890074 2530 + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0613"; repClass "LTR"; repEnd "2717"; repFamily "ERV1"; repLeft "-3881"; repStart "2684"; chr13 rmsk exon 22890398 22890848 2530 + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0613"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3461"; repStart "2718"; chr13 rmsk exon 22890870 22890970 9273 + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0613"; repClass "LTR"; repEnd "5040"; repFamily "ERV1"; repLeft "-1558"; repStart "4946"; chr13 rmsk exon 22891256 22892771 9273 + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0613"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5041"; chr13 rmsk exon 22892801 22893203 2653 + . gene_id "MER4_13q12.12b"; transcript_id "MER4_13q12.12b"; locus "MER4_13q12.12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0613"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "55"; ### MER4_13q12.12c ### chr13 rmsk gene 22894085 22902731 . + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0614"; model_cov "4692"; model_pct "71.1"; chr13 rmsk exon 22894085 22894537 2482 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0614"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 22894628 22895392 1282 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "1107"; repFamily "ERV1"; repLeft "-5491"; repStart "228"; chr13 rmsk exon 22895427 22896224 5048 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "-4640"; repStart "1161"; chr13 rmsk exon 22896519 22897029 5048 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "1959"; chr13 rmsk exon 22898202 22898234 10716 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "2958"; repFamily "ERV1"; repLeft "-3640"; repStart "2924"; chr13 rmsk exon 22898528 22899526 10716 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "3981"; repFamily "ERV1"; repLeft "-2617"; repStart "2959"; chr13 rmsk exon 22900970 22902356 10716 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "5386"; repFamily "ERV1"; repLeft "-1212"; repStart "3982"; chr13 rmsk exon 22902695 22902731 10716 + . gene_id "MER4_13q12.12c"; transcript_id "MER4_13q12.12c"; locus "MER4_13q12.12c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0614"; repClass "LTR"; repEnd "5417"; repFamily "ERV1"; repLeft "-1181"; repStart "5387"; ### ERVLB4_13q12.12a ### chr13 rmsk gene 22927361 22931755 . - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1336"; model_cov "3503"; model_pct "61.3"; chr13 rmsk exon 22927361 22928048 3824 - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1336"; repClass "LTR"; repEnd "4084"; repFamily "ERVL"; repLeft "3388"; repStart "-1630"; chr13 rmsk exon 22928056 22928613 15072 - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1336"; repClass "LTR"; repEnd "2810"; repFamily "ERVL"; repLeft "2255"; repStart "-2904"; chr13 rmsk exon 22928919 22929460 15072 - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1336"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "1707"; repStart "-3460"; chr13 rmsk exon 22929616 22931271 15072 - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1336"; repClass "LTR"; repEnd "1706"; repFamily "ERVL"; repLeft "1"; repStart "-4008"; chr13 rmsk exon 22931276 22931755 1961 - . gene_id "ERVLB4_13q12.12a"; transcript_id "ERVLB4_13q12.12a"; locus "ERVLB4_13q12.12a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1336"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-34"; repStart "-8"; ### HML3_13q12.12 ### chr13 rmsk gene 23006722 23011038 . + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0183"; model_cov "3774"; model_pct "62.7"; chr13 rmsk exon 23006722 23007183 3150 + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0183"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "148"; chr13 rmsk exon 23007185 23008859 13422 + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0183"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1125"; chr13 rmsk exon 23008860 23009092 1681 + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0183"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr13 rmsk exon 23009079 23010524 11039 + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0183"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chr13 rmsk exon 23010525 23011038 4176 + . gene_id "HML3_13q12.12"; transcript_id "HML3_13q12.12"; locus "HML3_13q12.12"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0183"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_13q12.12a ### chr13 rmsk gene 23011352 23013772 . - . gene_id "ERV316A3_13q12.12a"; transcript_id "ERV316A3_13q12.12a"; locus "ERV316A3_13q12.12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2150"; model_cov "1550"; model_pct "29.7"; chr13 rmsk exon 23011352 23011714 961 - . gene_id "ERV316A3_13q12.12a"; transcript_id "ERV316A3_13q12.12a"; locus "ERV316A3_13q12.12a"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2150"; repClass "LTR"; repEnd "494"; repFamily "ERVL"; repLeft "105"; repStart "-1"; chr13 rmsk exon 23012263 23013772 1376 - . gene_id "ERV316A3_13q12.12a"; transcript_id "ERV316A3_13q12.12a"; locus "ERV316A3_13q12.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2150"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "3231"; repStart "-445"; ### ERV316A3_13q12.12b ### chr13 rmsk gene 23185538 23188084 . - . gene_id "ERV316A3_13q12.12b"; transcript_id "ERV316A3_13q12.12b"; locus "ERV316A3_13q12.12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2151"; model_cov "2165"; model_pct "41.4"; chr13 rmsk exon 23185538 23185908 293 - . gene_id "ERV316A3_13q12.12b"; transcript_id "ERV316A3_13q12.12b"; locus "ERV316A3_13q12.12b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2151"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "5"; repStart "-2"; chr13 rmsk exon 23186002 23186199 256 - . gene_id "ERV316A3_13q12.12b"; transcript_id "ERV316A3_13q12.12b"; locus "ERV316A3_13q12.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2151"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "4681"; repStart "-359"; chr13 rmsk exon 23186406 23188084 2023 - . gene_id "ERV316A3_13q12.12b"; transcript_id "ERV316A3_13q12.12b"; locus "ERV316A3_13q12.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2151"; repClass "LTR"; repEnd "4418"; repFamily "ERVL"; repLeft "2439"; repStart "-808"; ### HERVL_13q12.12 ### chr13 rmsk gene 23313727 23318271 . + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1019"; model_cov "3030"; model_pct "53.6"; chr13 rmsk exon 23313727 23314148 2868 + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1019"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr13 rmsk exon 23314519 23314573 391 + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1019"; repClass "LTR"; repEnd "55"; repFamily "ERVL"; repLeft "-5599"; repStart "1"; chr13 rmsk exon 23314566 23316924 22749 + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1019"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "-620"; repStart "2677"; chr13 rmsk exon 23317205 23317811 22749 + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1019"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5035"; chr13 rmsk exon 23317812 23318271 2855 + . gene_id "HERVL_13q12.12"; transcript_id "HERVL_13q12.12"; locus "HERVL_13q12.12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1019"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_13q12.12d ### chr13 rmsk gene 23483388 23484754 . - . gene_id "MER4_13q12.12d"; transcript_id "MER4_13q12.12d"; locus "MER4_13q12.12d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0616"; model_cov "1074"; model_pct "16.3"; chr13 rmsk exon 23483388 23483513 6227 - . gene_id "MER4_13q12.12d"; transcript_id "MER4_13q12.12d"; locus "MER4_13q12.12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0616"; repClass "LTR"; repEnd "6366"; repFamily "ERV1"; repLeft "6252"; repStart "-232"; chr13 rmsk exon 23483835 23484754 6227 - . gene_id "MER4_13q12.12d"; transcript_id "MER4_13q12.12d"; locus "MER4_13q12.12d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0616"; repClass "LTR"; repEnd "6251"; repFamily "ERV1"; repLeft "5291"; repStart "-347"; ### PABLA_13q12.12 ### chr13 rmsk gene 23682323 23686052 . + . gene_id "PABLA_13q12.12"; transcript_id "PABLA_13q12.12"; locus "PABLA_13q12.12"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0118"; model_cov "5156"; model_pct "100.0"; chr13 rmsk exon 23682323 23683020 3954 + . gene_id "PABLA_13q12.12"; transcript_id "PABLA_13q12.12"; locus "PABLA_13q12.12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0118"; repClass "LTR"; repEnd "-298"; repFamily "ERV1"; repLeft "-5313"; repStart "-930"; chr13 rmsk exon 23682993 23686052 10627 + . gene_id "PABLA_13q12.12"; transcript_id "PABLA_13q12.12"; locus "PABLA_13q12.12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0118"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "-2"; repStart "489"; ### LTR25_13q12.12 ### chr13 rmsk gene 23959795 23961130 . + . gene_id "LTR25_13q12.12"; transcript_id "LTR25_13q12.12"; locus "LTR25_13q12.12"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0097"; model_cov "1498"; model_pct "20.8"; chr13 rmsk exon 23959795 23961130 3527 + . gene_id "LTR25_13q12.12"; transcript_id "LTR25_13q12.12"; locus "LTR25_13q12.12"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0097"; repClass "LTR"; repEnd "4901"; repFamily "ERV1"; repLeft "-2287"; repStart "3403"; ### ERVLE_13q12.12 ### chr13 rmsk gene 24254725 24255552 . - . gene_id "ERVLE_13q12.12"; transcript_id "ERVLE_13q12.12"; locus "ERVLE_13q12.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2800"; model_cov "695"; model_pct "12.3"; chr13 rmsk exon 24254725 24255136 566 - . gene_id "ERVLE_13q12.12"; transcript_id "ERVLE_13q12.12"; locus "ERVLE_13q12.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2800"; repClass "LTR"; repEnd "4127"; repFamily "ERVL"; repLeft "3739"; repStart "-1540"; chr13 rmsk exon 24255256 24255552 597 - . gene_id "ERVLE_13q12.12"; transcript_id "ERVLE_13q12.12"; locus "ERVLE_13q12.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2800"; repClass "LTR"; repEnd "1762"; repFamily "ERVL"; repLeft "1455"; repStart "-3905"; ### ERVLB4_13q12.12b ### chr13 rmsk gene 24348068 24353803 . - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1338"; model_cov "4802"; model_pct "84.0"; chr13 rmsk exon 24348068 24350232 6459 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "5655"; repFamily "ERVL"; repLeft "3388"; repStart "-59"; chr13 rmsk exon 24350240 24350495 1774 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "2810"; repFamily "ERVL"; repLeft "2559"; repStart "-2904"; chr13 rmsk exon 24350490 24350523 11655 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "2287"; repFamily "ERVL"; repLeft "2255"; repStart "-3427"; chr13 rmsk exon 24350832 24351406 11655 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "1700"; repStart "-3460"; chr13 rmsk exon 24351563 24353213 11655 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "1699"; repFamily "ERVL"; repLeft "1"; repStart "-4015"; chr13 rmsk exon 24353218 24353290 313 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "444"; repStart "-4"; chr13 rmsk exon 24353366 24353803 1893 - . gene_id "ERVLB4_13q12.12b"; transcript_id "ERVLB4_13q12.12b"; locus "ERVLB4_13q12.12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1338"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-46"; repStart "-42"; ### PRIMAX_13q12.12 ### chr13 rmsk gene 24404760 24406062 . - . gene_id "PRIMAX_13q12.12"; transcript_id "PRIMAX_13q12.12"; locus "PRIMAX_13q12.12"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0023"; model_cov "579"; model_pct "14.1"; chr13 rmsk exon 24404760 24404878 282 - . gene_id "PRIMAX_13q12.12"; transcript_id "PRIMAX_13q12.12"; locus "PRIMAX_13q12.12"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0023"; repClass "LTR"; repEnd "3140"; repFamily "ERV1"; repLeft "3021"; repStart "-962"; chr13 rmsk exon 24405562 24405852 270 - . gene_id "PRIMAX_13q12.12"; transcript_id "PRIMAX_13q12.12"; locus "PRIMAX_13q12.12"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0023"; repClass "LTR"; repEnd "2264"; repFamily "ERV1"; repLeft "1968"; repStart "-1838"; chr13 rmsk exon 24405915 24406062 270 - . gene_id "PRIMAX_13q12.12"; transcript_id "PRIMAX_13q12.12"; locus "PRIMAX_13q12.12"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0023"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1803"; repStart "-2135"; ### MER4B_13q12.12 ### chr13 rmsk gene 24640319 24644172 . - . gene_id "MER4B_13q12.12"; transcript_id "MER4B_13q12.12"; locus "MER4B_13q12.12"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0344"; model_cov "3624"; model_pct "53.6"; chr13 rmsk exon 24640319 24641130 12460 - . gene_id "MER4B_13q12.12"; transcript_id "MER4B_13q12.12"; locus "MER4B_13q12.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0344"; repClass "LTR"; repEnd "6650"; repFamily "ERV1"; repLeft "5829"; repStart "-108"; chr13 rmsk exon 24641427 24642765 12460 - . gene_id "MER4B_13q12.12"; transcript_id "MER4B_13q12.12"; locus "MER4B_13q12.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0344"; repClass "LTR"; repEnd "5828"; repFamily "ERV1"; repLeft "4452"; repStart "-930"; chr13 rmsk exon 24642768 24643330 3639 - . gene_id "MER4B_13q12.12"; transcript_id "MER4B_13q12.12"; locus "MER4B_13q12.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0344"; repClass "LTR"; repEnd "4085"; repFamily "ERV1"; repLeft "3503"; repStart "-2673"; chr13 rmsk exon 24643368 24644172 4133 - . gene_id "MER4B_13q12.12"; transcript_id "MER4B_13q12.12"; locus "MER4B_13q12.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0344"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "2247"; repStart "-3666"; ### HML5_13q12.13 ### chr13 rmsk gene 24925662 24928256 . + . gene_id "HML5_13q12.13"; transcript_id "HML5_13q12.13"; locus "HML5_13q12.13"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0094"; model_cov "1839"; model_pct "26.9"; chr13 rmsk exon 24925662 24926143 3122 + . gene_id "HML5_13q12.13"; transcript_id "HML5_13q12.13"; locus "HML5_13q12.13"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0094"; repClass "LTR"; repEnd "454"; repFamily "ERVK"; repLeft "-4"; repStart "-135"; chr13 rmsk exon 24926144 24927035 5917 + . gene_id "HML5_13q12.13"; transcript_id "HML5_13q12.13"; locus "HML5_13q12.13"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0094"; repClass "LTR"; repEnd "935"; repFamily "ERVK"; repLeft "-5902"; repStart "29"; chr13 rmsk exon 24927036 24927964 6747 + . gene_id "HML5_13q12.13"; transcript_id "HML5_13q12.13"; locus "HML5_13q12.13"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0094"; repClass "LTR"; repEnd "3077"; repFamily "ERVK"; repLeft "-3760"; repStart "2144"; chr13 rmsk exon 24927965 24928256 1842 + . gene_id "HML5_13q12.13"; transcript_id "HML5_13q12.13"; locus "HML5_13q12.13"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0094"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "174"; ### HUERSP3_13q12.13 ### chr13 rmsk gene 24995133 24998556 . + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0160"; model_cov "1955"; model_pct "21.9"; chr13 rmsk exon 24995133 24995294 1000 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "3123"; chr13 rmsk exon 24995288 24995427 789 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "4683"; repFamily "ERV1"; repLeft "-4236"; repStart "4539"; chr13 rmsk exon 24995439 24996056 4258 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-3342"; repStart "4960"; chr13 rmsk exon 24996042 24996078 3828 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "6198"; repFamily "ERV1"; repLeft "-2721"; repStart "6162"; chr13 rmsk exon 24996388 24997195 3828 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "-1934"; repStart "6199"; chr13 rmsk exon 24997666 24997925 1337 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "8913"; repFamily "ERV1"; repLeft "-6"; repStart "8702"; chr13 rmsk exon 24997933 24998556 3303 + . gene_id "HUERSP3_13q12.13"; transcript_id "HUERSP3_13q12.13"; locus "HUERSP3_13q12.13"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0160"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_13q12.13 ### chr13 rmsk gene 26142890 26149161 . - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1339"; model_cov "4647"; model_pct "81.3"; chr13 rmsk exon 26142890 26144936 11961 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "5464"; repFamily "ERVL"; repLeft "3399"; repStart "-250"; chr13 rmsk exon 26144925 26145350 5301 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "2754"; repFamily "ERVL"; repLeft "2306"; repStart "-2960"; chr13 rmsk exon 26145741 26146242 5301 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "2305"; repFamily "ERVL"; repLeft "1792"; repStart "-3409"; chr13 rmsk exon 26146273 26146781 6831 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "1582"; repFamily "ERVL"; repLeft "1072"; repStart "-4132"; chr13 rmsk exon 26147086 26147964 6831 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "1071"; repFamily "ERVL"; repLeft "219"; repStart "-4643"; chr13 rmsk exon 26148336 26148580 6831 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "-41"; repStart "-5496"; chr13 rmsk exon 26148702 26149161 2023 - . gene_id "ERVLB4_13q12.13"; transcript_id "ERVLB4_13q12.13"; locus "ERVLB4_13q12.13"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1339"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-43"; ### ERV316A3_13q12.13a ### chr13 rmsk gene 26225832 26232365 . - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2152"; model_cov "4993"; model_pct "95.5"; chr13 rmsk exon 26225832 26226227 936 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "3"; repStart "-1"; chr13 rmsk exon 26226309 26226798 1571 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "4331"; repStart "-390"; chr13 rmsk exon 26226796 26228656 5604 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "4524"; repFamily "ERVL"; repLeft "2633"; repStart "-702"; chr13 rmsk exon 26229651 26229921 1916 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "2294"; repFamily "ERVL"; repLeft "2016"; repStart "-2932"; chr13 rmsk exon 26230008 26230491 1916 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "2015"; repFamily "ERVL"; repLeft "1507"; repStart "-3211"; chr13 rmsk exon 26230482 26232217 2272 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "231"; repStart "-3184"; chr13 rmsk exon 26232218 26232365 407 - . gene_id "ERV316A3_13q12.13a"; transcript_id "ERV316A3_13q12.13a"; locus "ERV316A3_13q12.13a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2152"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "286"; repStart "0"; ### ERV316A3_13q12.13b ### chr13 rmsk gene 26628531 26629975 . - . gene_id "ERV316A3_13q12.13b"; transcript_id "ERV316A3_13q12.13b"; locus "ERV316A3_13q12.13b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2153"; model_cov "1452"; model_pct "27.8"; chr13 rmsk exon 26628531 26629144 1189 - . gene_id "ERV316A3_13q12.13b"; transcript_id "ERV316A3_13q12.13b"; locus "ERV316A3_13q12.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2153"; repClass "LTR"; repEnd "4860"; repFamily "ERVL"; repLeft "4249"; repStart "-366"; chr13 rmsk exon 26629191 26629975 1388 - . gene_id "ERV316A3_13q12.13b"; transcript_id "ERV316A3_13q12.13b"; locus "ERV316A3_13q12.13b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2153"; repClass "LTR"; repEnd "3847"; repFamily "ERVL"; repLeft "3006"; repStart "-1379"; ### ERV316A3_13q12.13c ### chr13 rmsk gene 26636671 26638126 . - . gene_id "ERV316A3_13q12.13c"; transcript_id "ERV316A3_13q12.13c"; locus "ERV316A3_13q12.13c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2154"; model_cov "1239"; model_pct "23.7"; chr13 rmsk exon 26636671 26637081 1237 - . gene_id "ERV316A3_13q12.13c"; transcript_id "ERV316A3_13q12.13c"; locus "ERV316A3_13q12.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2154"; repClass "LTR"; repEnd "2995"; repFamily "ERVL"; repLeft "2567"; repStart "-2231"; chr13 rmsk exon 26637089 26637885 1104 - . gene_id "ERV316A3_13q12.13c"; transcript_id "ERV316A3_13q12.13c"; locus "ERV316A3_13q12.13c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2154"; repClass "LTR"; repEnd "820"; repFamily "ERVL"; repLeft "9"; repStart "-4406"; chr13 rmsk exon 26637887 26638126 554 - . gene_id "ERV316A3_13q12.13c"; transcript_id "ERV316A3_13q12.13c"; locus "ERV316A3_13q12.13c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2154"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "216"; repStart "0"; ### ERVLE_13q12.13a ### chr13 rmsk gene 26941320 26942133 . + . gene_id "ERVLE_13q12.13a"; transcript_id "ERVLE_13q12.13a"; locus "ERVLE_13q12.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2803"; model_cov "843"; model_pct "14.9"; chr13 rmsk exon 26941320 26942133 1877 + . gene_id "ERVLE_13q12.13a"; transcript_id "ERVLE_13q12.13a"; locus "ERVLE_13q12.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2803"; repClass "LTR"; repEnd "3134"; repFamily "ERVL"; repLeft "-2533"; repStart "2291"; ### ERVLE_13q12.13b ### chr13 rmsk gene 27199770 27203628 . + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2804"; model_cov "2227"; model_pct "39.3"; chr13 rmsk exon 27199770 27200178 1956 + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2804"; repClass "LTR"; repEnd "2834"; repFamily "ERVL"; repLeft "-2833"; repStart "2429"; chr13 rmsk exon 27200486 27200779 1956 + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2804"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "-2519"; repStart "2835"; chr13 rmsk exon 27201467 27201982 1278 + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2804"; repClass "LTR"; repEnd "3937"; repFamily "ERVL"; repLeft "-1730"; repStart "3398"; chr13 rmsk exon 27202380 27202928 2726 + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2804"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "-1152"; repStart "3964"; chr13 rmsk exon 27203227 27203628 2726 + . gene_id "ERVLE_13q12.13b"; transcript_id "ERVLE_13q12.13b"; locus "ERVLE_13q12.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2804"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "-732"; repStart "4516"; ### ERVLE_13q12.2a ### chr13 rmsk gene 27679080 27681223 . - . gene_id "ERVLE_13q12.2a"; transcript_id "ERVLE_13q12.2a"; locus "ERVLE_13q12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2806"; model_cov "2143"; model_pct "37.8"; chr13 rmsk exon 27679080 27680407 2104 - . gene_id "ERVLE_13q12.2a"; transcript_id "ERVLE_13q12.2a"; locus "ERVLE_13q12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2806"; repClass "LTR"; repEnd "5076"; repFamily "ERVL"; repLeft "3496"; repStart "-591"; chr13 rmsk exon 27680544 27681024 1126 - . gene_id "ERVLE_13q12.2a"; transcript_id "ERVLE_13q12.2a"; locus "ERVLE_13q12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2806"; repClass "LTR"; repEnd "3435"; repFamily "ERVL"; repLeft "2941"; repStart "-2232"; chr13 rmsk exon 27681154 27681223 293 - . gene_id "ERVLE_13q12.2a"; transcript_id "ERVLE_13q12.2a"; locus "ERVLE_13q12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2806"; repClass "LTR"; repEnd "3269"; repFamily "ERVL"; repLeft "3200"; repStart "-2398"; ### ERVLE_13q12.2b ### chr13 rmsk gene 27688067 27689068 . - . gene_id "ERVLE_13q12.2b"; transcript_id "ERVLE_13q12.2b"; locus "ERVLE_13q12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2807"; model_cov "1054"; model_pct "18.6"; chr13 rmsk exon 27688067 27689068 1808 - . gene_id "ERVLE_13q12.2b"; transcript_id "ERVLE_13q12.2b"; locus "ERVLE_13q12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2807"; repClass "LTR"; repEnd "2842"; repFamily "ERVL"; repLeft "1788"; repStart "-2825"; ### MER41_13q12.3a ### chr13 rmsk gene 28767746 28770415 . - . gene_id "MER41_13q12.3a"; transcript_id "MER41_13q12.3a"; locus "MER41_13q12.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0411"; model_cov "1923"; model_pct "32.3"; chr13 rmsk exon 28767746 28768277 3818 - . gene_id "MER41_13q12.3a"; transcript_id "MER41_13q12.3a"; locus "MER41_13q12.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0411"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr13 rmsk exon 28768278 28769081 12516 - . gene_id "MER41_13q12.3a"; transcript_id "MER41_13q12.3a"; locus "MER41_13q12.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0411"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5138"; repStart "0"; chr13 rmsk exon 28769323 28770415 12516 - . gene_id "MER41_13q12.3a"; transcript_id "MER41_13q12.3a"; locus "MER41_13q12.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0411"; repClass "LTR"; repEnd "5137"; repFamily "ERV1"; repLeft "4022"; repStart "-809"; ### MER41_13q12.3b ### chr13 rmsk gene 28789633 28790380 . - . gene_id "MER41_13q12.3b"; transcript_id "MER41_13q12.3b"; locus "MER41_13q12.3b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0412"; model_cov "748"; model_pct "12.6"; chr13 rmsk exon 28789633 28790380 4745 - . gene_id "MER41_13q12.3b"; transcript_id "MER41_13q12.3b"; locus "MER41_13q12.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0412"; repClass "LTR"; repEnd "4047"; repFamily "ERV1"; repLeft "3299"; repStart "-1899"; ### ERVLE_13q12.3a ### chr13 rmsk gene 28806261 28807078 . + . gene_id "ERVLE_13q12.3a"; transcript_id "ERVLE_13q12.3a"; locus "ERVLE_13q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2811"; model_cov "576"; model_pct "10.2"; chr13 rmsk exon 28806261 28806479 349 + . gene_id "ERVLE_13q12.3a"; transcript_id "ERVLE_13q12.3a"; locus "ERVLE_13q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2811"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4977"; repStart "462"; chr13 rmsk exon 28806739 28806910 497 + . gene_id "ERVLE_13q12.3a"; transcript_id "ERVLE_13q12.3a"; locus "ERVLE_13q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2811"; repClass "LTR"; repEnd "5064"; repFamily "ERVL"; repLeft "-603"; repStart "4907"; chr13 rmsk exon 28806892 28807078 732 + . gene_id "ERVLE_13q12.3a"; transcript_id "ERVLE_13q12.3a"; locus "ERVLE_13q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2811"; repClass "LTR"; repEnd "5020"; repFamily "ERVL"; repLeft "-647"; repStart "4829"; ### ERVLB4_13q12.3a ### chr13 rmsk gene 29418046 29419000 . - . gene_id "ERVLB4_13q12.3a"; transcript_id "ERVLB4_13q12.3a"; locus "ERVLB4_13q12.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1342"; model_cov "952"; model_pct "16.7"; chr13 rmsk exon 29418046 29419000 10077 - . gene_id "ERVLB4_13q12.3a"; transcript_id "ERVLB4_13q12.3a"; locus "ERVLB4_13q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1342"; repClass "LTR"; repEnd "2057"; repFamily "ERVL"; repLeft "1105"; repStart "-3657"; ### ERVLB4_13q12.3b ### chr13 rmsk gene 29419040 29420072 . - . gene_id "ERVLB4_13q12.3b"; transcript_id "ERVLB4_13q12.3b"; locus "ERVLB4_13q12.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1343"; model_cov "1031"; model_pct "18.0"; chr13 rmsk exon 29419040 29420072 10077 - . gene_id "ERVLB4_13q12.3b"; transcript_id "ERVLB4_13q12.3b"; locus "ERVLB4_13q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1343"; repClass "LTR"; repEnd "2057"; repFamily "ERVL"; repLeft "1026"; repStart "-3657"; ### MER41_13q12.3c ### chr13 rmsk gene 30055934 30059441 . + . gene_id "MER41_13q12.3c"; transcript_id "MER41_13q12.3c"; locus "MER41_13q12.3c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0413"; model_cov "5315"; model_pct "89.4"; chr13 rmsk exon 30055934 30056573 3350 + . gene_id "MER41_13q12.3c"; transcript_id "MER41_13q12.3c"; locus "MER41_13q12.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0413"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-2602"; repStart "2697"; chr13 rmsk exon 30056621 30059441 12677 + . gene_id "MER41_13q12.3c"; transcript_id "MER41_13q12.3c"; locus "MER41_13q12.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0413"; repClass "LTR"; repEnd "4328"; repFamily "ERV1"; repLeft "-1618"; repStart "-340"; ### MER101_13q12.3 ### chr13 rmsk gene 30082904 30091837 . + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0291"; model_cov "5447"; model_pct "82.0"; chr13 rmsk exon 30082904 30083247 14151 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "910"; repFamily "ERV1"; repLeft "-5729"; repStart "563"; chr13 rmsk exon 30083543 30084037 14151 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "1421"; repFamily "ERV1"; repLeft "-5218"; repStart "911"; chr13 rmsk exon 30084374 30085886 14151 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "3005"; repFamily "ERV1"; repLeft "-3634"; repStart "1422"; chr13 rmsk exon 30086329 30087028 8605 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "3702"; repFamily "ERV1"; repLeft "-2937"; repStart "2997"; chr13 rmsk exon 30087317 30087464 8605 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "3829"; repFamily "ERV1"; repLeft "-2810"; repStart "3703"; chr13 rmsk exon 30087774 30088321 8605 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "4306"; repFamily "ERV1"; repLeft "-2333"; repStart "3830"; chr13 rmsk exon 30088744 30088770 8605 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "4326"; repFamily "ERV1"; repLeft "-2313"; repStart "4307"; chr13 rmsk exon 30089063 30089280 8605 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "-2110"; repStart "4327"; chr13 rmsk exon 30089512 30089687 1359 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "4710"; repFamily "ERV1"; repLeft "-1929"; repStart "4537"; chr13 rmsk exon 30090013 30090057 1359 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "4748"; repFamily "ERV1"; repLeft "-1891"; repStart "4711"; chr13 rmsk exon 30090082 30091345 8748 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0291"; repClass "LTR"; repEnd "6635"; repFamily "ERV1"; repLeft "-4"; repStart "5366"; chr13 rmsk exon 30091348 30091837 2887 + . gene_id "MER101_13q12.3"; transcript_id "MER101_13q12.3"; locus "MER101_13q12.3"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0291"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q12.3b ### chr13 rmsk gene 30724513 30727951 . + . gene_id "ERVLE_13q12.3b"; transcript_id "ERVLE_13q12.3b"; locus "ERVLE_13q12.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2812"; model_cov "2567"; model_pct "45.3"; chr13 rmsk exon 30724513 30726699 9517 + . gene_id "ERVLE_13q12.3b"; transcript_id "ERVLE_13q12.3b"; locus "ERVLE_13q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2812"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "-324"; repStart "3088"; chr13 rmsk exon 30726830 30727060 9517 + . gene_id "ERVLE_13q12.3b"; transcript_id "ERVLE_13q12.3b"; locus "ERVLE_13q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2812"; repClass "LTR"; repEnd "5596"; repFamily "ERVL"; repLeft "-71"; repStart "5344"; chr13 rmsk exon 30727338 30727408 9517 + . gene_id "ERVLE_13q12.3b"; transcript_id "ERVLE_13q12.3b"; locus "ERVLE_13q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2812"; repClass "LTR"; repEnd "5657"; repFamily "ERVL"; repLeft "-10"; repStart "5597"; chr13 rmsk exon 30727421 30727951 1330 + . gene_id "ERVLE_13q12.3b"; transcript_id "ERVLE_13q12.3b"; locus "ERVLE_13q12.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2812"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-114"; repStart "3"; ### PRIMA41_13q12.3 ### chr13 rmsk gene 31360179 31361315 . + . gene_id "PRIMA41_13q12.3"; transcript_id "PRIMA41_13q12.3"; locus "PRIMA41_13q12.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0102"; model_cov "1080"; model_pct "13.9"; chr13 rmsk exon 31360179 31360717 545 + . gene_id "PRIMA41_13q12.3"; transcript_id "PRIMA41_13q12.3"; locus "PRIMA41_13q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0102"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "-3715"; repStart "3392"; chr13 rmsk exon 31361082 31361315 414 + . gene_id "PRIMA41_13q12.3"; transcript_id "PRIMA41_13q12.3"; locus "PRIMA41_13q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0102"; repClass "LTR"; repEnd "5570"; repFamily "ERV1"; repLeft "-2186"; repStart "5139"; ### HUERSP3B_13q12.3 ### chr13 rmsk gene 31390213 31392260 . - . gene_id "HUERSP3B_13q12.3"; transcript_id "HUERSP3B_13q12.3"; locus "HUERSP3B_13q12.3"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0107"; model_cov "3937"; model_pct "53.1"; chr13 rmsk exon 31390213 31392260 14233 - . gene_id "HUERSP3B_13q12.3"; transcript_id "HUERSP3B_13q12.3"; locus "HUERSP3B_13q12.3"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0107"; repClass "LTR"; repEnd "7038"; repFamily "ERV1"; repLeft "3101"; repStart "-380"; ### MER61_13q12.3 ### chr13 rmsk gene 31403653 31404380 . + . gene_id "MER61_13q12.3"; transcript_id "MER61_13q12.3"; locus "MER61_13q12.3"; category "internal"; intModel "MER61-int"; locid "MER61-int_0296"; model_cov "703"; model_pct "13.5"; chr13 rmsk exon 31403653 31404140 1914 + . gene_id "MER61_13q12.3"; transcript_id "MER61_13q12.3"; locus "MER61_13q12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0296"; repClass "LTR"; repEnd "1977"; repFamily "ERV1"; repLeft "-3240"; repStart "1476"; chr13 rmsk exon 31404116 31404380 1019 + . gene_id "MER61_13q12.3"; transcript_id "MER61_13q12.3"; locus "MER61_13q12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0296"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "-2673"; repStart "2342"; ### ERVL_13q13.1a ### chr13 rmsk gene 31683396 31683990 . - . gene_id "ERVL_13q13.1a"; transcript_id "ERVL_13q13.1a"; locus "ERVL_13q13.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0340"; model_cov "595"; model_pct "10.3"; chr13 rmsk exon 31683396 31683803 755 - . gene_id "ERVL_13q13.1a"; transcript_id "ERVL_13q13.1a"; locus "ERVL_13q13.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0340"; repClass "LTR"; repEnd "5334"; repFamily "ERVL"; repLeft "4913"; repStart "-423"; chr13 rmsk exon 31683820 31683990 609 - . gene_id "ERVL_13q13.1a"; transcript_id "ERVL_13q13.1a"; locus "ERVL_13q13.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0340"; repClass "LTR"; repEnd "4192"; repFamily "ERVL"; repLeft "4018"; repStart "-1565"; ### PRIMA41_13q13.1 ### chr13 rmsk gene 31715164 31717353 . - . gene_id "PRIMA41_13q13.1"; transcript_id "PRIMA41_13q13.1"; locus "PRIMA41_13q13.1"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0103"; model_cov "1625"; model_pct "21.0"; chr13 rmsk exon 31715164 31715737 2379 - . gene_id "PRIMA41_13q13.1"; transcript_id "PRIMA41_13q13.1"; locus "PRIMA41_13q13.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0103"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 31715738 31717353 9177 - . gene_id "PRIMA41_13q13.1"; transcript_id "PRIMA41_13q13.1"; locus "PRIMA41_13q13.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0103"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "6131"; repStart "0"; ### ERVLB4_13q13.1 ### chr13 rmsk gene 31718551 31719819 . - . gene_id "ERVLB4_13q13.1"; transcript_id "ERVLB4_13q13.1"; locus "ERVLB4_13q13.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1345"; model_cov "637"; model_pct "11.1"; chr13 rmsk exon 31718551 31719186 2876 - . gene_id "ERVLB4_13q13.1"; transcript_id "ERVLB4_13q13.1"; locus "ERVLB4_13q13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1345"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "1"; repStart "-5076"; chr13 rmsk exon 31719187 31719819 3116 - . gene_id "ERVLB4_13q13.1"; transcript_id "ERVLB4_13q13.1"; locus "ERVLB4_13q13.1"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_1345"; repClass "LTR"; repEnd "717"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL18_13q13.1 ### chr13 rmsk gene 32468596 32471903 . + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0119"; model_cov "2064"; model_pct "34.1"; chr13 rmsk exon 32468596 32469177 2942 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr13 rmsk exon 32469191 32469489 1314 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "-5750"; repStart "5"; chr13 rmsk exon 32469484 32469717 732 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "763"; repFamily "ERVL"; repLeft "-5284"; repStart "492"; chr13 rmsk exon 32469724 32469815 267 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "960"; repFamily "ERVL"; repLeft "-5087"; repStart "874"; chr13 rmsk exon 32469818 32470166 990 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1401"; chr13 rmsk exon 32470166 32470288 387 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "2290"; repFamily "ERVL"; repLeft "-3757"; repStart "2119"; chr13 rmsk exon 32470305 32470369 384 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2388"; chr13 rmsk exon 32470369 32471120 4308 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2720"; chr13 rmsk exon 32471303 32471903 2956 + . gene_id "HERVL18_13q13.1"; transcript_id "HERVL18_13q13.1"; locus "HERVL18_13q13.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0119"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_13q13.1a ### chr13 rmsk gene 32608410 32609898 . - . gene_id "ERVLE_13q13.1a"; transcript_id "ERVLE_13q13.1a"; locus "ERVLE_13q13.1a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2813"; model_cov "846"; model_pct "14.9"; chr13 rmsk exon 32608410 32609058 1699 - . gene_id "ERVLE_13q13.1a"; transcript_id "ERVLE_13q13.1a"; locus "ERVLE_13q13.1a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2813"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "1"; repStart "-4"; chr13 rmsk exon 32609073 32609224 569 - . gene_id "ERVLE_13q13.1a"; transcript_id "ERVLE_13q13.1a"; locus "ERVLE_13q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2813"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "5478"; repStart "-25"; chr13 rmsk exon 32609259 32609898 2637 - . gene_id "ERVLE_13q13.1a"; transcript_id "ERVLE_13q13.1a"; locus "ERVLE_13q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2813"; repClass "LTR"; repEnd "5428"; repFamily "ERVL"; repLeft "4746"; repStart "-239"; ### HUERSP1_13q13.1 ### chr13 rmsk gene 32825641 32827787 . + . gene_id "HUERSP1_13q13.1"; transcript_id "HUERSP1_13q13.1"; locus "HUERSP1_13q13.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0158"; model_cov "1243"; model_pct "19.8"; chr13 rmsk exon 32825641 32826171 3036 + . gene_id "HUERSP1_13q13.1"; transcript_id "HUERSP1_13q13.1"; locus "HUERSP1_13q13.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0158"; repClass "LTR"; repEnd "526"; repFamily "ERV1"; repLeft "-165"; repStart "1"; chr13 rmsk exon 32826482 32826650 3036 + . gene_id "HUERSP1_13q13.1"; transcript_id "HUERSP1_13q13.1"; locus "HUERSP1_13q13.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0158"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "527"; chr13 rmsk exon 32826651 32827219 2789 + . gene_id "HUERSP1_13q13.1"; transcript_id "HUERSP1_13q13.1"; locus "HUERSP1_13q13.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0158"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "-5624"; repStart "1"; chr13 rmsk exon 32827255 32827787 2789 + . gene_id "HUERSP1_13q13.1"; transcript_id "HUERSP1_13q13.1"; locus "HUERSP1_13q13.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0158"; repClass "LTR"; repEnd "1245"; repFamily "ERV1"; repLeft "-5018"; repStart "640"; ### ERVL_13q13.1b ### chr13 rmsk gene 32876118 32878753 . + . gene_id "ERVL_13q13.1b"; transcript_id "ERVL_13q13.1b"; locus "ERVL_13q13.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0341"; model_cov "2469"; model_pct "42.9"; chr13 rmsk exon 32876118 32876709 887 + . gene_id "ERVL_13q13.1b"; transcript_id "ERVL_13q13.1b"; locus "ERVL_13q13.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0341"; repClass "LTR"; repEnd "2657"; repFamily "ERVL"; repLeft "-3100"; repStart "2035"; chr13 rmsk exon 32877050 32877177 360 + . gene_id "ERVL_13q13.1b"; transcript_id "ERVL_13q13.1b"; locus "ERVL_13q13.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0341"; repClass "LTR"; repEnd "3651"; repFamily "ERVL"; repLeft "-2106"; repStart "3521"; chr13 rmsk exon 32877181 32878753 2962 + . gene_id "ERVL_13q13.1b"; transcript_id "ERVL_13q13.1b"; locus "ERVL_13q13.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0341"; repClass "LTR"; repEnd "4808"; repFamily "ERVL"; repLeft "-949"; repStart "3091"; ### ERVLE_13q13.1b ### chr13 rmsk gene 32889766 32891866 . - . gene_id "ERVLE_13q13.1b"; transcript_id "ERVLE_13q13.1b"; locus "ERVLE_13q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2814"; model_cov "2185"; model_pct "38.6"; chr13 rmsk exon 32889766 32889932 497 - . gene_id "ERVLE_13q13.1b"; transcript_id "ERVLE_13q13.1b"; locus "ERVLE_13q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2814"; repClass "LTR"; repEnd "4260"; repFamily "ERVL"; repLeft "4088"; repStart "-1407"; chr13 rmsk exon 32889947 32890743 2561 - . gene_id "ERVLE_13q13.1b"; transcript_id "ERVLE_13q13.1b"; locus "ERVLE_13q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2814"; repClass "LTR"; repEnd "4012"; repFamily "ERVL"; repLeft "3195"; repStart "-1655"; chr13 rmsk exon 32890774 32891866 1476 - . gene_id "ERVLE_13q13.1b"; transcript_id "ERVLE_13q13.1b"; locus "ERVLE_13q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2814"; repClass "LTR"; repEnd "3111"; repFamily "ERVL"; repLeft "1915"; repStart "-2556"; ### ERV316A3_13q13.1a ### chr13 rmsk gene 32957526 32959234 . - . gene_id "ERV316A3_13q13.1a"; transcript_id "ERV316A3_13q13.1a"; locus "ERV316A3_13q13.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2159"; model_cov "1106"; model_pct "21.2"; chr13 rmsk exon 32957526 32957939 1643 - . gene_id "ERV316A3_13q13.1a"; transcript_id "ERV316A3_13q13.1a"; locus "ERV316A3_13q13.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2159"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr13 rmsk exon 32958144 32959234 3253 - . gene_id "ERV316A3_13q13.1a"; transcript_id "ERV316A3_13q13.1a"; locus "ERV316A3_13q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2159"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "3895"; repStart "-225"; ### ERV316A3_13q13.1b ### chr13 rmsk gene 33026467 33028287 . - . gene_id "ERV316A3_13q13.1b"; transcript_id "ERV316A3_13q13.1b"; locus "ERV316A3_13q13.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2160"; model_cov "1288"; model_pct "24.6"; chr13 rmsk exon 33026467 33026574 509 - . gene_id "ERV316A3_13q13.1b"; transcript_id "ERV316A3_13q13.1b"; locus "ERV316A3_13q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2160"; repClass "LTR"; repEnd "1713"; repFamily "ERVL"; repLeft "1605"; repStart "-3513"; chr13 rmsk exon 33026601 33027317 1559 - . gene_id "ERV316A3_13q13.1b"; transcript_id "ERV316A3_13q13.1b"; locus "ERV316A3_13q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2160"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "674"; repStart "-3794"; chr13 rmsk exon 33027379 33027735 598 - . gene_id "ERV316A3_13q13.1b"; transcript_id "ERV316A3_13q13.1b"; locus "ERV316A3_13q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2160"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "107"; repStart "-4697"; chr13 rmsk exon 33027830 33028287 1827 - . gene_id "ERV316A3_13q13.1b"; transcript_id "ERV316A3_13q13.1b"; locus "ERV316A3_13q13.1b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2160"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_13q13.2 ### chr13 rmsk gene 33865617 33867070 . + . gene_id "ERVLB4_13q13.2"; transcript_id "ERVLB4_13q13.2"; locus "ERVLB4_13q13.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1346"; model_cov "1235"; model_pct "21.6"; chr13 rmsk exon 33865617 33865771 409 + . gene_id "ERVLB4_13q13.2"; transcript_id "ERVLB4_13q13.2"; locus "ERVLB4_13q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1346"; repClass "LTR"; repEnd "1153"; repFamily "ERVL"; repLeft "-4561"; repStart "1006"; chr13 rmsk exon 33866077 33867070 779 + . gene_id "ERVLB4_13q13.2"; transcript_id "ERVLB4_13q13.2"; locus "ERVLB4_13q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1346"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "-3492"; repStart "1134"; ### ERVLE_13q13.2a ### chr13 rmsk gene 34127637 34129736 . + . gene_id "ERVLE_13q13.2a"; transcript_id "ERVLE_13q13.2a"; locus "ERVLE_13q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2815"; model_cov "1925"; model_pct "34.0"; chr13 rmsk exon 34127637 34128629 3962 + . gene_id "ERVLE_13q13.2a"; transcript_id "ERVLE_13q13.2a"; locus "ERVLE_13q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2815"; repClass "LTR"; repEnd "2408"; repFamily "ERVL"; repLeft "-3259"; repStart "1382"; chr13 rmsk exon 34128631 34128880 877 + . gene_id "ERVLE_13q13.2a"; transcript_id "ERVLE_13q13.2a"; locus "ERVLE_13q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2815"; repClass "LTR"; repEnd "2820"; repFamily "ERVL"; repLeft "-2847"; repStart "2575"; chr13 rmsk exon 34129087 34129651 2407 + . gene_id "ERVLE_13q13.2a"; transcript_id "ERVLE_13q13.2a"; locus "ERVLE_13q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2815"; repClass "LTR"; repEnd "3399"; repFamily "ERVL"; repLeft "-2268"; repStart "2814"; chr13 rmsk exon 34129668 34129736 397 + . gene_id "ERVLE_13q13.2a"; transcript_id "ERVLE_13q13.2a"; locus "ERVLE_13q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2815"; repClass "LTR"; repEnd "4294"; repFamily "ERVL"; repLeft "-1373"; repStart "4225"; ### ERVLE_13q13.2b ### chr13 rmsk gene 34129862 34132251 . + . gene_id "ERVLE_13q13.2b"; transcript_id "ERVLE_13q13.2b"; locus "ERVLE_13q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2816"; model_cov "1789"; model_pct "31.6"; chr13 rmsk exon 34129862 34129976 3385 + . gene_id "ERVLE_13q13.2b"; transcript_id "ERVLE_13q13.2b"; locus "ERVLE_13q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2816"; repClass "LTR"; repEnd "3540"; repFamily "ERVL"; repLeft "-2127"; repStart "3402"; chr13 rmsk exon 34130117 34131552 3385 + . gene_id "ERVLE_13q13.2b"; transcript_id "ERVLE_13q13.2b"; locus "ERVLE_13q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2816"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "-606"; repStart "3541"; chr13 rmsk exon 34132117 34132251 493 + . gene_id "ERVLE_13q13.2b"; transcript_id "ERVLE_13q13.2b"; locus "ERVLE_13q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2816"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "-465"; repStart "5071"; ### ERV316A3_13q13.2 ### chr13 rmsk gene 34404927 34409340 . - . gene_id "ERV316A3_13q13.2"; transcript_id "ERV316A3_13q13.2"; locus "ERV316A3_13q13.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2161"; model_cov "3599"; model_pct "68.9"; chr13 rmsk exon 34404927 34406708 8133 - . gene_id "ERV316A3_13q13.2"; transcript_id "ERV316A3_13q13.2"; locus "ERV316A3_13q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2161"; repClass "LTR"; repEnd "3615"; repFamily "ERVL"; repLeft "1734"; repStart "-1611"; chr13 rmsk exon 34407216 34408908 8133 - . gene_id "ERV316A3_13q13.2"; transcript_id "ERV316A3_13q13.2"; locus "ERV316A3_13q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2161"; repClass "LTR"; repEnd "1733"; repFamily "ERVL"; repLeft "15"; repStart "-3493"; chr13 rmsk exon 34408920 34409340 1336 - . gene_id "ERV316A3_13q13.2"; transcript_id "ERV316A3_13q13.2"; locus "ERV316A3_13q13.2"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2161"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "33"; repStart "-12"; ### ERVLE_13q13.2c ### chr13 rmsk gene 34429646 34432540 . - . gene_id "ERVLE_13q13.2c"; transcript_id "ERVLE_13q13.2c"; locus "ERVLE_13q13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2819"; model_cov "1441"; model_pct "25.4"; chr13 rmsk exon 34429646 34429773 418 - . gene_id "ERVLE_13q13.2c"; transcript_id "ERVLE_13q13.2c"; locus "ERVLE_13q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2819"; repClass "LTR"; repEnd "3533"; repFamily "ERVL"; repLeft "3407"; repStart "-2134"; chr13 rmsk exon 34429855 34430102 604 - . gene_id "ERVLE_13q13.2c"; transcript_id "ERVLE_13q13.2c"; locus "ERVLE_13q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2819"; repClass "LTR"; repEnd "3284"; repFamily "ERVL"; repLeft "2927"; repStart "-2383"; chr13 rmsk exon 34431163 34431809 1185 - . gene_id "ERVLE_13q13.2c"; transcript_id "ERVLE_13q13.2c"; locus "ERVLE_13q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2819"; repClass "LTR"; repEnd "2721"; repFamily "ERVL"; repLeft "2037"; repStart "-2946"; chr13 rmsk exon 34432264 34432540 638 - . gene_id "ERVLE_13q13.2c"; transcript_id "ERVLE_13q13.2c"; locus "ERVLE_13q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2819"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "1429"; repStart "-3964"; ### HERVH_13q13.2 ### chr13 rmsk gene 34799254 34803348 . + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0974"; model_cov "3650"; model_pct "47.3"; chr13 rmsk exon 34799254 34799358 868 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "366"; chr13 rmsk exon 34799359 34799581 1390 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "225"; repFamily "ERV1"; repLeft "-7488"; repStart "1"; chr13 rmsk exon 34799550 34802054 15581 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "486"; chr13 rmsk exon 34802034 34802183 936 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 34802174 34802335 998 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr13 rmsk exon 34802328 34802930 4389 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr13 rmsk exon 34802931 34803348 3331 + . gene_id "HERVH_13q13.2"; transcript_id "HERVH_13q13.2"; locus "HERVH_13q13.2"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_0974"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### ERV316A3_13q13.3a ### chr13 rmsk gene 36260993 36261493 . + . gene_id "ERV316A3_13q13.3a"; transcript_id "ERV316A3_13q13.3a"; locus "ERV316A3_13q13.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2163"; model_cov "521"; model_pct "10.0"; chr13 rmsk exon 36260993 36261493 1524 + . gene_id "ERV316A3_13q13.3a"; transcript_id "ERV316A3_13q13.3a"; locus "ERV316A3_13q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2163"; repClass "LTR"; repEnd "4212"; repFamily "ERVL"; repLeft "-1014"; repStart "3691"; ### ERV316A3_13q13.3b ### chr13 rmsk gene 36265353 36267161 . - . gene_id "ERV316A3_13q13.3b"; transcript_id "ERV316A3_13q13.3b"; locus "ERV316A3_13q13.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2164"; model_cov "1340"; model_pct "25.6"; chr13 rmsk exon 36265353 36266180 2156 - . gene_id "ERV316A3_13q13.3b"; transcript_id "ERV316A3_13q13.3b"; locus "ERV316A3_13q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2164"; repClass "LTR"; repEnd "2421"; repFamily "ERVL"; repLeft "1579"; repStart "-2805"; chr13 rmsk exon 36266240 36266718 1447 - . gene_id "ERV316A3_13q13.3b"; transcript_id "ERV316A3_13q13.3b"; locus "ERV316A3_13q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2164"; repClass "LTR"; repEnd "754"; repFamily "ERVL"; repLeft "256"; repStart "-4472"; chr13 rmsk exon 36266928 36267161 773 - . gene_id "ERV316A3_13q13.3b"; transcript_id "ERV316A3_13q13.3b"; locus "ERV316A3_13q13.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2164"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "229"; repStart "-1"; ### HERVH_13q13.3a ### chr13 rmsk gene 36316325 36322191 . + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0975"; model_cov "5016"; model_pct "65.0"; chr13 rmsk exon 36316325 36316770 3433 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 36316818 36319989 20086 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "46"; chr13 rmsk exon 36319980 36320484 3448 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr13 rmsk exon 36320487 36321145 4323 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 36321147 36321362 1340 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 36321361 36321740 2568 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 36321741 36322191 3514 + . gene_id "HERVH_13q13.3a"; transcript_id "HERVH_13q13.3a"; locus "HERVH_13q13.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0975"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_13q13.3a ### chr13 rmsk gene 36755979 36757131 . + . gene_id "ERVLB4_13q13.3a"; transcript_id "ERVLB4_13q13.3a"; locus "ERVLB4_13q13.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1348"; model_cov "1190"; model_pct "20.8"; chr13 rmsk exon 36755979 36757131 1570 + . gene_id "ERVLB4_13q13.3a"; transcript_id "ERVLB4_13q13.3a"; locus "ERVLB4_13q13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1348"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-398"; repStart "4126"; ### HERVW_13q13.3 ### chr13 rmsk gene 36956650 36958981 . + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0240"; model_cov "1891"; model_pct "21.9"; chr13 rmsk exon 36956650 36956762 744 + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0240"; repClass "LTR"; repEnd "366"; repFamily "ERV1"; repLeft "-414"; repStart "256"; chr13 rmsk exon 36956763 36958343 12246 + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0240"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "5582"; chr13 rmsk exon 36958340 36958375 295 + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0240"; repClass "LTR"; repEnd "7545"; repFamily "ERV1"; repLeft "-1081"; repStart "7510"; chr13 rmsk exon 36958369 36958652 2140 + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0240"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr13 rmsk exon 36958653 36958981 2310 + . gene_id "HERVW_13q13.3"; transcript_id "HERVW_13q13.3"; locus "HERVW_13q13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0240"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_13q13.3c ### chr13 rmsk gene 37142248 37147742 . + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2167"; model_cov "2977"; model_pct "57.0"; chr13 rmsk exon 37142248 37142697 349 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-4856"; repStart "-74"; chr13 rmsk exon 37142809 37142999 311 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "1215"; repFamily "ERVL"; repLeft "-4011"; repStart "1013"; chr13 rmsk exon 37144103 37144371 502 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "-3337"; repStart "1608"; chr13 rmsk exon 37144791 37145583 844 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "2378"; repFamily "ERVL"; repLeft "-2848"; repStart "1449"; chr13 rmsk exon 37145655 37146073 1112 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "4082"; repFamily "ERVL"; repLeft "-1144"; repStart "3660"; chr13 rmsk exon 37146619 37146849 452 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "4372"; repFamily "ERVL"; repLeft "-854"; repStart "4131"; chr13 rmsk exon 37146874 37147333 1036 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "5137"; repFamily "ERVL"; repLeft "-89"; repStart "4679"; chr13 rmsk exon 37147441 37147742 1210 + . gene_id "ERV316A3_13q13.3c"; transcript_id "ERV316A3_13q13.3c"; locus "ERV316A3_13q13.3c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2167"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-167"; repStart "2"; ### ERVLE_13q13.3a ### chr13 rmsk gene 37494673 37497249 . - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2821"; model_cov "2008"; model_pct "35.4"; chr13 rmsk exon 37494673 37494929 321 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "4936"; repStart "-465"; chr13 rmsk exon 37494936 37495410 1217 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "4509"; repFamily "ERVL"; repLeft "4019"; repStart "-1158"; chr13 rmsk exon 37495643 37495916 968 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "3683"; repFamily "ERVL"; repLeft "3401"; repStart "-1984"; chr13 rmsk exon 37496228 37496329 968 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "3299"; repStart "-2267"; chr13 rmsk exon 37496372 37497034 912 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "3285"; repFamily "ERVL"; repLeft "2608"; repStart "-2382"; chr13 rmsk exon 37497064 37497249 328 - . gene_id "ERVLE_13q13.3a"; transcript_id "ERVLE_13q13.3a"; locus "ERVLE_13q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2821"; repClass "LTR"; repEnd "2107"; repFamily "ERVL"; repLeft "1915"; repStart "-3560"; ### HML6_13q13.3 ### chr13 rmsk gene 37558860 37561209 . + . gene_id "HML6_13q13.3"; transcript_id "HML6_13q13.3"; locus "HML6_13q13.3"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0067"; model_cov "1159"; model_pct "16.1"; chr13 rmsk exon 37558860 37559396 3429 + . gene_id "HML6_13q13.3"; transcript_id "HML6_13q13.3"; locus "HML6_13q13.3"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0067"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr13 rmsk exon 37559690 37559878 748 + . gene_id "HML6_13q13.3"; transcript_id "HML6_13q13.3"; locus "HML6_13q13.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0067"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "28"; chr13 rmsk exon 37560017 37561209 4499 + . gene_id "HML6_13q13.3"; transcript_id "HML6_13q13.3"; locus "HML6_13q13.3"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0067"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; ### HERVH_13q13.3b ### chr13 rmsk gene 37969007 37974554 . - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0976"; model_cov "4993"; model_pct "64.7"; chr13 rmsk exon 37969007 37969408 2690 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 37969409 37969787 2411 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 37969786 37970001 1339 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 37970003 37970664 4451 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr13 rmsk exon 37970668 37971510 6042 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr13 rmsk exon 37971490 37974397 19142 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "125"; repStart "-4718"; chr13 rmsk exon 37974399 37974554 622 - . gene_id "HERVH_13q13.3b"; transcript_id "HERVH_13q13.3b"; locus "HERVH_13q13.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0976"; repClass "LTR"; repEnd "192"; repFamily "ERV1"; repLeft "3"; repStart "-258"; ### ERV316A3_13q13.3d ### chr13 rmsk gene 38073984 38074495 . + . gene_id "ERV316A3_13q13.3d"; transcript_id "ERV316A3_13q13.3d"; locus "ERV316A3_13q13.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2169"; model_cov "524"; model_pct "10.0"; chr13 rmsk exon 38073984 38074495 360 + . gene_id "ERV316A3_13q13.3d"; transcript_id "ERV316A3_13q13.3d"; locus "ERV316A3_13q13.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2169"; repClass "LTR"; repEnd "4899"; repFamily "ERVL"; repLeft "-327"; repStart "4375"; ### ERVLB4_13q13.3b ### chr13 rmsk gene 38210513 38211281 . - . gene_id "ERVLB4_13q13.3b"; transcript_id "ERVLB4_13q13.3b"; locus "ERVLB4_13q13.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1349"; model_cov "730"; model_pct "12.8"; chr13 rmsk exon 38210513 38211281 1268 - . gene_id "ERVLB4_13q13.3b"; transcript_id "ERVLB4_13q13.3b"; locus "ERVLB4_13q13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1349"; repClass "LTR"; repEnd "5531"; repFamily "ERVL"; repLeft "4801"; repStart "-183"; ### ERV316A3_13q13.3e ### chr13 rmsk gene 38307401 38312094 . + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2170"; model_cov "3161"; model_pct "60.5"; chr13 rmsk exon 38307401 38307527 577 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "1911"; repFamily "ERVL"; repLeft "-3315"; repStart "1784"; chr13 rmsk exon 38307576 38307744 281 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "2193"; repFamily "ERVL"; repLeft "-3033"; repStart "2011"; chr13 rmsk exon 38307856 38309722 4768 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "-965"; repStart "2333"; chr13 rmsk exon 38310135 38310288 4768 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "4432"; repFamily "ERVL"; repLeft "-794"; repStart "4262"; chr13 rmsk exon 38310564 38311329 1335 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4472"; chr13 rmsk exon 38311330 38311383 1092 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "49"; repFamily "ERVL"; repLeft "-431"; repStart "1"; chr13 rmsk exon 38311693 38312094 1092 + . gene_id "ERV316A3_13q13.3e"; transcript_id "ERV316A3_13q13.3e"; locus "ERV316A3_13q13.3e"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2170"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "50"; ### ERVLE_13q13.3b ### chr13 rmsk gene 38404799 38407641 . - . gene_id "ERVLE_13q13.3b"; transcript_id "ERVLE_13q13.3b"; locus "ERVLE_13q13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2822"; model_cov "2757"; model_pct "48.7"; chr13 rmsk exon 38404799 38405842 2634 - . gene_id "ERVLE_13q13.3b"; transcript_id "ERVLE_13q13.3b"; locus "ERVLE_13q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2822"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "4107"; repStart "-460"; chr13 rmsk exon 38405842 38405927 360 - . gene_id "ERVLE_13q13.3b"; transcript_id "ERVLE_13q13.3b"; locus "ERVLE_13q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2822"; repClass "LTR"; repEnd "3119"; repFamily "ERVL"; repLeft "3033"; repStart "-2548"; chr13 rmsk exon 38406163 38406886 887 - . gene_id "ERVLE_13q13.3b"; transcript_id "ERVLE_13q13.3b"; locus "ERVLE_13q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2822"; repClass "LTR"; repEnd "2888"; repFamily "ERVL"; repLeft "2067"; repStart "-2779"; chr13 rmsk exon 38406913 38407641 1803 - . gene_id "ERVLE_13q13.3b"; transcript_id "ERVLE_13q13.3b"; locus "ERVLE_13q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2822"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "1240"; repStart "-3677"; ### ERV316A3_13q13.3f ### chr13 rmsk gene 38561030 38562693 . - . gene_id "ERV316A3_13q13.3f"; transcript_id "ERV316A3_13q13.3f"; locus "ERV316A3_13q13.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2171"; model_cov "692"; model_pct "13.2"; chr13 rmsk exon 38561030 38561508 906 - . gene_id "ERV316A3_13q13.3f"; transcript_id "ERV316A3_13q13.3f"; locus "ERV316A3_13q13.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2171"; repClass "LTR"; repEnd "1178"; repFamily "ERVL"; repLeft "663"; repStart "-4048"; chr13 rmsk exon 38562163 38562327 272 - . gene_id "ERV316A3_13q13.3f"; transcript_id "ERV316A3_13q13.3f"; locus "ERV316A3_13q13.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2171"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "233"; repStart "-4816"; chr13 rmsk exon 38562425 38562693 645 - . gene_id "ERV316A3_13q13.3f"; transcript_id "ERV316A3_13q13.3f"; locus "ERV316A3_13q13.3f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2171"; repClass "LTR"; repEnd "337"; repFamily "ERVL"; repLeft "1"; repStart "-101"; ### ERVLB4_13q13.3c ### chr13 rmsk gene 38673645 38675539 . + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1350"; model_cov "1492"; model_pct "26.1"; chr13 rmsk exon 38673645 38674135 2961 + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1350"; repClass "LTR"; repEnd "1381"; repFamily "ERVL"; repLeft "-4333"; repStart "884"; chr13 rmsk exon 38674134 38675095 4454 + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1350"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4719"; chr13 rmsk exon 38675096 38675405 1224 + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1350"; repClass "LTR"; repEnd "294"; repFamily "ERVL"; repLeft "-226"; repStart "1"; chr13 rmsk exon 38675418 38675433 255 + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1350"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "464"; chr13 rmsk exon 38675498 38675539 268 + . gene_id "ERVLB4_13q13.3c"; transcript_id "ERVLB4_13q13.3c"; locus "ERVLB4_13q13.3c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1350"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "472"; ### MER41_13q13.3 ### chr13 rmsk gene 39080845 39086958 . + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0415"; model_cov "4686"; model_pct "78.8"; chr13 rmsk exon 39080845 39080897 920 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0415"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "-95"; repStart "479"; chr13 rmsk exon 39081173 39081277 920 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0415"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "540"; chr13 rmsk exon 39081278 39081908 5683 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0415"; repClass "LTR"; repEnd "630"; repFamily "ERV1"; repLeft "-5316"; repStart "1"; chr13 rmsk exon 39082214 39083166 5683 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0415"; repClass "LTR"; repEnd "1668"; repFamily "ERV1"; repLeft "-4278"; repStart "631"; chr13 rmsk exon 39083210 39084120 4920 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0415"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "1944"; chr13 rmsk exon 39084103 39085176 11325 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0415"; repClass "LTR"; repEnd "3802"; repFamily "ERV1"; repLeft "-2144"; repStart "2833"; chr13 rmsk exon 39085239 39086399 11325 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0415"; repClass "LTR"; repEnd "4852"; repFamily "ERV1"; repLeft "-1094"; repStart "3803"; chr13 rmsk exon 39086411 39086958 3983 + . gene_id "MER41_13q13.3"; transcript_id "MER41_13q13.3"; locus "MER41_13q13.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0415"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_13q13.3g ### chr13 rmsk gene 39165224 39169374 . - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2172"; model_cov "2762"; model_pct "52.9"; chr13 rmsk exon 39165224 39165653 1356 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "5"; repStart "-2"; chr13 rmsk exon 39165721 39166033 761 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "5165"; repFamily "ERVL"; repLeft "4849"; repStart "-61"; chr13 rmsk exon 39166073 39167341 2841 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "4580"; repFamily "ERVL"; repLeft "3301"; repStart "-646"; chr13 rmsk exon 39167352 39167891 658 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "1645"; repFamily "ERVL"; repLeft "1128"; repStart "-3581"; chr13 rmsk exon 39168197 39168337 658 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "1357"; repFamily "ERVL"; repLeft "1215"; repStart "-3869"; chr13 rmsk exon 39168474 39168771 606 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "896"; repFamily "ERVL"; repLeft "556"; repStart "-4330"; chr13 rmsk exon 39169209 39169374 347 - . gene_id "ERV316A3_13q13.3g"; transcript_id "ERV316A3_13q13.3g"; locus "ERV316A3_13q13.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2172"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "382"; repStart "-4676"; ### HERVL_13q14.11a ### chr13 rmsk gene 40281279 40282974 . - . gene_id "HERVL_13q14.11a"; transcript_id "HERVL_13q14.11a"; locus "HERVL_13q14.11a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1021"; model_cov "1181"; model_pct "20.9"; chr13 rmsk exon 40281279 40281308 249 - . gene_id "HERVL_13q14.11a"; transcript_id "HERVL_13q14.11a"; locus "HERVL_13q14.11a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1021"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "424"; repStart "0"; chr13 rmsk exon 40281310 40282485 9475 - . gene_id "HERVL_13q14.11a"; transcript_id "HERVL_13q14.11a"; locus "HERVL_13q14.11a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1021"; repClass "LTR"; repEnd "1182"; repFamily "ERVL"; repLeft "1"; repStart "-4472"; chr13 rmsk exon 40282486 40282561 3203 - . gene_id "HERVL_13q14.11a"; transcript_id "HERVL_13q14.11a"; locus "HERVL_13q14.11a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1021"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr13 rmsk exon 40282604 40282974 3203 - . gene_id "HERVL_13q14.11a"; transcript_id "HERVL_13q14.11a"; locus "HERVL_13q14.11a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1021"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "5"; repStart "-60"; ### HERVL_13q14.11b ### chr13 rmsk gene 40872614 40874122 . + . gene_id "HERVL_13q14.11b"; transcript_id "HERVL_13q14.11b"; locus "HERVL_13q14.11b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1022"; model_cov "1049"; model_pct "18.6"; chr13 rmsk exon 40872614 40872997 2856 + . gene_id "HERVL_13q14.11b"; transcript_id "HERVL_13q14.11b"; locus "HERVL_13q14.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1022"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr13 rmsk exon 40873041 40873080 2856 + . gene_id "HERVL_13q14.11b"; transcript_id "HERVL_13q14.11b"; locus "HERVL_13q14.11b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1022"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "390"; chr13 rmsk exon 40873086 40874122 7469 + . gene_id "HERVL_13q14.11b"; transcript_id "HERVL_13q14.11b"; locus "HERVL_13q14.11b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1022"; repClass "LTR"; repEnd "1050"; repFamily "ERVL"; repLeft "-4604"; repStart "1"; ### HERVE_13q14.11a ### chr13 rmsk gene 40874123 40881282 . - . gene_id "HERVE_13q14.11a"; transcript_id "HERVE_13q14.11a"; locus "HERVE_13q14.11a"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0127"; model_cov "6003"; model_pct "76.8"; chr13 rmsk exon 40874123 40874572 2102 - . gene_id "HERVE_13q14.11a"; transcript_id "HERVE_13q14.11a"; locus "HERVE_13q14.11a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0127"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr13 rmsk exon 40874575 40874680 749 - . gene_id "HERVE_13q14.11a"; transcript_id "HERVE_13q14.11a"; locus "HERVE_13q14.11a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0127"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "7708"; repStart "0"; chr13 rmsk exon 40875044 40880825 31715 - . gene_id "HERVE_13q14.11a"; transcript_id "HERVE_13q14.11a"; locus "HERVE_13q14.11a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0127"; repClass "LTR"; repEnd "5899"; repFamily "ERV1"; repLeft "1"; repStart "-1914"; chr13 rmsk exon 40880826 40881282 2427 - . gene_id "HERVE_13q14.11a"; transcript_id "HERVE_13q14.11a"; locus "HERVE_13q14.11a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0127"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_13q14.11a ### chr13 rmsk gene 41025738 41029828 . + . gene_id "ERVLB4_13q14.11a"; transcript_id "ERVLB4_13q14.11a"; locus "ERVLB4_13q14.11a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1352"; model_cov "3347"; model_pct "58.6"; chr13 rmsk exon 41025738 41028733 18462 + . gene_id "ERVLB4_13q14.11a"; transcript_id "ERVLB4_13q14.11a"; locus "ERVLB4_13q14.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1352"; repClass "LTR"; repEnd "5488"; repFamily "ERVL"; repLeft "-226"; repStart "2364"; chr13 rmsk exon 41029043 41029274 18462 + . gene_id "ERVLB4_13q14.11a"; transcript_id "ERVLB4_13q14.11a"; locus "ERVLB4_13q14.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1352"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5489"; chr13 rmsk exon 41029277 41029392 1351 + . gene_id "ERVLB4_13q14.11a"; transcript_id "ERVLB4_13q14.11a"; locus "ERVLB4_13q14.11a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1352"; repClass "LTR"; repEnd "101"; repFamily "ERVL"; repLeft "-453"; repStart "1"; chr13 rmsk exon 41029680 41029828 1351 + . gene_id "ERVLB4_13q14.11a"; transcript_id "ERVLB4_13q14.11a"; locus "ERVLB4_13q14.11a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1352"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "-287"; repStart "102"; ### MER4B_13q14.11a ### chr13 rmsk gene 41160964 41163166 . + . gene_id "MER4B_13q14.11a"; transcript_id "MER4B_13q14.11a"; locus "MER4B_13q14.11a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0346"; model_cov "2140"; model_pct "31.7"; chr13 rmsk exon 41160964 41163166 4606 + . gene_id "MER4B_13q14.11a"; transcript_id "MER4B_13q14.11a"; locus "MER4B_13q14.11a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0346"; repClass "LTR"; repEnd "6079"; repFamily "ERV1"; repLeft "-679"; repStart "3939"; ### ERVLB4_13q14.11b ### chr13 rmsk gene 41247210 41248682 . - . gene_id "ERVLB4_13q14.11b"; transcript_id "ERVLB4_13q14.11b"; locus "ERVLB4_13q14.11b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1353"; model_cov "1236"; model_pct "21.6"; chr13 rmsk exon 41247210 41248177 5364 - . gene_id "ERVLB4_13q14.11b"; transcript_id "ERVLB4_13q14.11b"; locus "ERVLB4_13q14.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1353"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "1740"; repStart "-2998"; chr13 rmsk exon 41248422 41248682 1392 - . gene_id "ERVLB4_13q14.11b"; transcript_id "ERVLB4_13q14.11b"; locus "ERVLB4_13q14.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1353"; repClass "LTR"; repEnd "1560"; repFamily "ERVL"; repLeft "1300"; repStart "-4154"; ### MER4B_13q14.11b ### chr13 rmsk gene 41268226 41271983 . - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0347"; model_cov "2735"; model_pct "40.5"; chr13 rmsk exon 41268226 41268435 1204 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "4992"; repFamily "ERV1"; repLeft "4795"; repStart "-1766"; chr13 rmsk exon 41268576 41269185 3461 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "3815"; repFamily "ERV1"; repLeft "3181"; repStart "-2943"; chr13 rmsk exon 41269498 41269780 3461 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "3180"; repFamily "ERV1"; repLeft "2897"; repStart "-3578"; chr13 rmsk exon 41270018 41270723 3831 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "2655"; repFamily "ERV1"; repLeft "1909"; repStart "-4103"; chr13 rmsk exon 41271097 41271299 1281 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "1142"; repFamily "ERV1"; repLeft "924"; repStart "-5616"; chr13 rmsk exon 41271321 41271983 4256 - . gene_id "MER4B_13q14.11b"; transcript_id "MER4B_13q14.11b"; locus "MER4B_13q14.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0347"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "190"; repStart "-5911"; ### MER4_13q14.11 ### chr13 rmsk gene 41271989 41274149 . - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0619"; model_cov "1062"; model_pct "16.1"; chr13 rmsk exon 41271989 41272346 1264 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0619"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2118"; repStart "-4107"; chr13 rmsk exon 41272428 41272508 273 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0619"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-716"; repStart "-7237"; chr13 rmsk exon 41272503 41272559 253 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0619"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "629"; repStart "-5913"; chr13 rmsk exon 41272582 41273044 2160 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0619"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "41"; repStart "-6040"; chr13 rmsk exon 41273342 41273382 2160 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0619"; repClass "LTR"; repEnd "40"; repFamily "ERV1"; repLeft "1"; repStart "-6558"; chr13 rmsk exon 41273386 41273578 3143 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0619"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "288"; repStart "0"; chr13 rmsk exon 41273855 41274149 3143 - . gene_id "MER4_13q14.11"; transcript_id "MER4_13q14.11"; locus "MER4_13q14.11"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0619"; repClass "LTR"; repEnd "287"; repFamily "ERV1"; repLeft "1"; repStart "-185"; ### MER101_13q14.11 ### chr13 rmsk gene 41293972 41297234 . + . gene_id "MER101_13q14.11"; transcript_id "MER101_13q14.11"; locus "MER101_13q14.11"; category "internal"; intModel "MER101-int"; locid "MER101-int_0292"; model_cov "2495"; model_pct "37.6"; chr13 rmsk exon 41293972 41294123 387 + . gene_id "MER101_13q14.11"; transcript_id "MER101_13q14.11"; locus "MER101_13q14.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0292"; repClass "LTR"; repEnd "268"; repFamily "ERV1"; repLeft "-6371"; repStart "115"; chr13 rmsk exon 41294454 41295771 6176 + . gene_id "MER101_13q14.11"; transcript_id "MER101_13q14.11"; locus "MER101_13q14.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0292"; repClass "LTR"; repEnd "3440"; repFamily "ERV1"; repLeft "-3199"; repStart "1985"; chr13 rmsk exon 41296374 41296729 6176 + . gene_id "MER101_13q14.11"; transcript_id "MER101_13q14.11"; locus "MER101_13q14.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0292"; repClass "LTR"; repEnd "3790"; repFamily "ERV1"; repLeft "-2849"; repStart "3441"; chr13 rmsk exon 41296716 41297234 1741 + . gene_id "MER101_13q14.11"; transcript_id "MER101_13q14.11"; locus "MER101_13q14.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0292"; repClass "LTR"; repEnd "5150"; repFamily "ERV1"; repLeft "-1489"; repStart "4612"; ### HERVE_13q14.11b ### chr13 rmsk gene 41421402 41424642 . - . gene_id "HERVE_13q14.11b"; transcript_id "HERVE_13q14.11b"; locus "HERVE_13q14.11b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0128"; model_cov "3264"; model_pct "41.8"; chr13 rmsk exon 41421402 41424642 23011 - . gene_id "HERVE_13q14.11b"; transcript_id "HERVE_13q14.11b"; locus "HERVE_13q14.11b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0128"; repClass "LTR"; repEnd "4372"; repFamily "ERV1"; repLeft "1108"; repStart "-3441"; ### HERVH_13q14.11a ### chr13 rmsk gene 42868004 42873158 . - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0977"; model_cov "4233"; model_pct "54.9"; chr13 rmsk exon 42868004 42868454 3506 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 42868455 42868833 2341 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr13 rmsk exon 42868834 42869059 1258 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 42869061 42869617 2269 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4668"; repStart "-2564"; chr13 rmsk exon 42869608 42869752 805 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 42869732 42872703 18937 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 42872706 42873158 3462 - . gene_id "HERVH_13q14.11a"; transcript_id "HERVH_13q14.11a"; locus "HERVH_13q14.11a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0977"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_13q14.11b ### chr13 rmsk gene 43059672 43061602 . - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0978"; model_cov "1513"; model_pct "19.6"; chr13 rmsk exon 43059672 43060100 3213 - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0978"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 43060101 43060646 3323 - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0978"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr13 rmsk exon 43060640 43060694 309 - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0978"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5962"; repStart "-1697"; chr13 rmsk exon 43060715 43061388 4671 - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0978"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "4221"; repStart "-2803"; chr13 rmsk exon 43061387 43061602 1422 - . gene_id "HERVH_13q14.11b"; transcript_id "HERVH_13q14.11b"; locus "HERVH_13q14.11b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0978"; repClass "LTR"; repEnd "4290"; repFamily "ERV1"; repLeft "4076"; repStart "-3423"; ### ERVLE_13q14.11 ### chr13 rmsk gene 43914880 43916540 . + . gene_id "ERVLE_13q14.11"; transcript_id "ERVLE_13q14.11"; locus "ERVLE_13q14.11"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2824"; model_cov "1426"; model_pct "25.2"; chr13 rmsk exon 43914880 43915767 2990 + . gene_id "ERVLE_13q14.11"; transcript_id "ERVLE_13q14.11"; locus "ERVLE_13q14.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2824"; repClass "LTR"; repEnd "3087"; repFamily "ERVL"; repLeft "-2580"; repStart "2150"; chr13 rmsk exon 43916055 43916540 2990 + . gene_id "ERVLE_13q14.11"; transcript_id "ERVLE_13q14.11"; locus "ERVLE_13q14.11"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2824"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "-2090"; repStart "3088"; ### ERV316A3_13q14.11a ### chr13 rmsk gene 43941787 43943829 . + . gene_id "ERV316A3_13q14.11a"; transcript_id "ERV316A3_13q14.11a"; locus "ERV316A3_13q14.11a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2174"; model_cov "1177"; model_pct "22.5"; chr13 rmsk exon 43941787 43942094 1330 + . gene_id "ERV316A3_13q14.11a"; transcript_id "ERV316A3_13q14.11a"; locus "ERV316A3_13q14.11a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2174"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "108"; chr13 rmsk exon 43942237 43943409 3248 + . gene_id "ERV316A3_13q14.11a"; transcript_id "ERV316A3_13q14.11a"; locus "ERV316A3_13q14.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2174"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-20"; repStart "4029"; chr13 rmsk exon 43943414 43943829 1437 + . gene_id "ERV316A3_13q14.11a"; transcript_id "ERV316A3_13q14.11a"; locus "ERV316A3_13q14.11a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2174"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### ERV316A3_13q14.11b ### chr13 rmsk gene 44324075 44326166 . - . gene_id "ERV316A3_13q14.11b"; transcript_id "ERV316A3_13q14.11b"; locus "ERV316A3_13q14.11b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2176"; model_cov "1676"; model_pct "32.1"; chr13 rmsk exon 44324075 44324463 661 - . gene_id "ERV316A3_13q14.11b"; transcript_id "ERV316A3_13q14.11b"; locus "ERV316A3_13q14.11b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2176"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "1"; repStart "-10"; chr13 rmsk exon 44324541 44326166 5247 - . gene_id "ERV316A3_13q14.11b"; transcript_id "ERV316A3_13q14.11b"; locus "ERV316A3_13q14.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2176"; repClass "LTR"; repEnd "5113"; repFamily "ERVL"; repLeft "3437"; repStart "-113"; ### HERVE_13q14.13a ### chr13 rmsk gene 45378077 45379338 . - . gene_id "HERVE_13q14.13a"; transcript_id "HERVE_13q14.13a"; locus "HERVE_13q14.13a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0131"; model_cov "1182"; model_pct "15.1"; chr13 rmsk exon 45378077 45378674 3966 - . gene_id "HERVE_13q14.13a"; transcript_id "HERVE_13q14.13a"; locus "HERVE_13q14.13a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0131"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "3249"; repStart "-3967"; chr13 rmsk exon 45378753 45379338 3846 - . gene_id "HERVE_13q14.13a"; transcript_id "HERVE_13q14.13a"; locus "HERVE_13q14.13a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0131"; repClass "LTR"; repEnd "3834"; repFamily "ERV1"; repLeft "3249"; repStart "-3979"; ### HERVE_13q14.13b ### chr13 rmsk gene 45382637 45383907 . - . gene_id "HERVE_13q14.13b"; transcript_id "HERVE_13q14.13b"; locus "HERVE_13q14.13b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0134"; model_cov "1182"; model_pct "15.1"; chr13 rmsk exon 45382637 45383238 4069 - . gene_id "HERVE_13q14.13b"; transcript_id "HERVE_13q14.13b"; locus "HERVE_13q14.13b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0134"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "3249"; repStart "-3967"; chr13 rmsk exon 45383317 45383907 3995 - . gene_id "HERVE_13q14.13b"; transcript_id "HERVE_13q14.13b"; locus "HERVE_13q14.13b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0134"; repClass "LTR"; repEnd "3834"; repFamily "ERV1"; repLeft "3249"; repStart "-3979"; ### ERVLE_13q14.13 ### chr13 rmsk gene 45384069 45386407 . - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2826"; model_cov "1130"; model_pct "19.9"; chr13 rmsk exon 45384069 45384535 1644 - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2826"; repClass "LTR"; repEnd "3286"; repFamily "ERVL"; repLeft "2790"; repStart "-2381"; chr13 rmsk exon 45384545 45384831 789 - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2826"; repClass "LTR"; repEnd "2671"; repFamily "ERVL"; repLeft "2385"; repStart "-2996"; chr13 rmsk exon 45385669 45385827 340 - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2826"; repClass "LTR"; repEnd "1733"; repFamily "ERVL"; repLeft "1557"; repStart "-3934"; chr13 rmsk exon 45385938 45386046 525 - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2826"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "1287"; repStart "-4274"; chr13 rmsk exon 45386341 45386407 525 - . gene_id "ERVLE_13q14.13"; transcript_id "ERVLE_13q14.13"; locus "ERVLE_13q14.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2826"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1220"; repStart "-4381"; ### MER41_13q14.13 ### chr13 rmsk gene 45641766 45644059 . + . gene_id "MER41_13q14.13"; transcript_id "MER41_13q14.13"; locus "MER41_13q14.13"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0416"; model_cov "1314"; model_pct "22.1"; chr13 rmsk exon 45641766 45641935 990 + . gene_id "MER41_13q14.13"; transcript_id "MER41_13q14.13"; locus "MER41_13q14.13"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0416"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "400"; chr13 rmsk exon 45642290 45643593 9862 + . gene_id "MER41_13q14.13"; transcript_id "MER41_13q14.13"; locus "MER41_13q14.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0416"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4630"; chr13 rmsk exon 45643594 45644059 3731 + . gene_id "MER41_13q14.13"; transcript_id "MER41_13q14.13"; locus "MER41_13q14.13"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0416"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HERVL_13q14.13 ### chr13 rmsk gene 45753186 45759670 . - . gene_id "HERVL_13q14.13"; transcript_id "HERVL_13q14.13"; locus "HERVL_13q14.13"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1025"; model_cov "5653"; model_pct "100.0"; chr13 rmsk exon 45753186 45753625 3493 - . gene_id "HERVL_13q14.13"; transcript_id "HERVL_13q14.13"; locus "HERVL_13q14.13"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1025"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr13 rmsk exon 45753626 45759254 46120 - . gene_id "HERVL_13q14.13"; transcript_id "HERVL_13q14.13"; locus "HERVL_13q14.13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1025"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 45759255 45759670 3102 - . gene_id "HERVL_13q14.13"; transcript_id "HERVL_13q14.13"; locus "HERVL_13q14.13"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1025"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### ERV316A3_13q14.13 ### chr13 rmsk gene 46094507 46098944 . + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2177"; model_cov "2952"; model_pct "56.5"; chr13 rmsk exon 46094507 46095665 1854 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "2470"; repFamily "ERVL"; repLeft "-2756"; repStart "1310"; chr13 rmsk exon 46095685 46095876 1821 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "-246"; repStart "31"; chr13 rmsk exon 46096181 46096424 1821 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-1"; repStart "217"; chr13 rmsk exon 46096437 46096495 4437 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "3487"; repFamily "ERVL"; repLeft "-1739"; repStart "3433"; chr13 rmsk exon 46096796 46098485 4437 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3488"; chr13 rmsk exon 46098486 46098944 1377 + . gene_id "ERV316A3_13q14.13"; transcript_id "ERV316A3_13q14.13"; locus "ERV316A3_13q14.13"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2177"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "-12"; ### HERVE_13q14.13c ### chr13 rmsk gene 46465840 46467206 . + . gene_id "HERVE_13q14.13c"; transcript_id "HERVE_13q14.13c"; locus "HERVE_13q14.13c"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0136"; model_cov "1284"; model_pct "16.4"; chr13 rmsk exon 46465840 46466098 1741 + . gene_id "HERVE_13q14.13c"; transcript_id "HERVE_13q14.13c"; locus "HERVE_13q14.13c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0136"; repClass "LTR"; repEnd "3505"; repFamily "ERV1"; repLeft "-4308"; repStart "3249"; chr13 rmsk exon 46466093 46466527 3012 + . gene_id "HERVE_13q14.13c"; transcript_id "HERVE_13q14.13c"; locus "HERVE_13q14.13c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0136"; repClass "LTR"; repEnd "3834"; repFamily "ERV1"; repLeft "-3979"; repStart "3403"; chr13 rmsk exon 46466606 46467206 4223 + . gene_id "HERVE_13q14.13c"; transcript_id "HERVE_13q14.13c"; locus "HERVE_13q14.13c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0136"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "-3967"; repStart "3249"; ### HERVL40_13q14.2 ### chr13 rmsk gene 46964352 46965551 . - . gene_id "HERVL40_13q14.2"; transcript_id "HERVL40_13q14.2"; locus "HERVL40_13q14.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0331"; model_cov "816"; model_pct "14.8"; chr13 rmsk exon 46964352 46964494 429 - . gene_id "HERVL40_13q14.2"; transcript_id "HERVL40_13q14.2"; locus "HERVL40_13q14.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0331"; repClass "LTR"; repEnd "5392"; repFamily "ERVL"; repLeft "5247"; repStart "-138"; chr13 rmsk exon 46964859 46965551 2030 - . gene_id "HERVL40_13q14.2"; transcript_id "HERVL40_13q14.2"; locus "HERVL40_13q14.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0331"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "4503"; repStart "-356"; ### ERVLB4_13q14.2a ### chr13 rmsk gene 47177076 47181713 . - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1354"; model_cov "3903"; model_pct "68.3"; chr13 rmsk exon 47177076 47177790 1146 - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1354"; repClass "LTR"; repEnd "5323"; repFamily "ERVL"; repLeft "4608"; repStart "-391"; chr13 rmsk exon 47178192 47178424 431 - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1354"; repClass "LTR"; repEnd "4533"; repFamily "ERVL"; repLeft "4279"; repStart "-1181"; chr13 rmsk exon 47178692 47179751 701 - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1354"; repClass "LTR"; repEnd "4242"; repFamily "ERVL"; repLeft "2992"; repStart "-1472"; chr13 rmsk exon 47179803 47180348 1980 - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1354"; repClass "LTR"; repEnd "2926"; repFamily "ERVL"; repLeft "2353"; repStart "-2788"; chr13 rmsk exon 47180629 47181713 1980 - . gene_id "ERVLB4_13q14.2a"; transcript_id "ERVLB4_13q14.2a"; locus "ERVLB4_13q14.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1354"; repClass "LTR"; repEnd "2352"; repFamily "ERVL"; repLeft "1241"; repStart "-3362"; ### ERV316A3_13q14.2a ### chr13 rmsk gene 47547599 47548603 . + . gene_id "ERV316A3_13q14.2a"; transcript_id "ERV316A3_13q14.2a"; locus "ERV316A3_13q14.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2178"; model_cov "713"; model_pct "13.6"; chr13 rmsk exon 47547599 47548194 1230 + . gene_id "ERV316A3_13q14.2a"; transcript_id "ERV316A3_13q14.2a"; locus "ERV316A3_13q14.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2178"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "-4"; repStart "4509"; chr13 rmsk exon 47548206 47548603 1182 + . gene_id "ERV316A3_13q14.2a"; transcript_id "ERV316A3_13q14.2a"; locus "ERV316A3_13q14.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2178"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-3"; repStart "8"; ### ERVLE_13q14.2a ### chr13 rmsk gene 47700289 47702912 . + . gene_id "ERVLE_13q14.2a"; transcript_id "ERVLE_13q14.2a"; locus "ERVLE_13q14.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2827"; model_cov "2539"; model_pct "44.8"; chr13 rmsk exon 47700289 47702277 8840 + . gene_id "ERVLE_13q14.2a"; transcript_id "ERVLE_13q14.2a"; locus "ERVLE_13q14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2827"; repClass "LTR"; repEnd "3378"; repFamily "ERVL"; repLeft "-2289"; repStart "1454"; chr13 rmsk exon 47702328 47702912 3459 + . gene_id "ERVLE_13q14.2a"; transcript_id "ERVLE_13q14.2a"; locus "ERVLE_13q14.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2827"; repClass "LTR"; repEnd "4421"; repFamily "ERVL"; repLeft "-1246"; repStart "3806"; ### HERVH_13q14.2a ### chr13 rmsk gene 48056344 48062289 . + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0979"; model_cov "5116"; model_pct "66.3"; chr13 rmsk exon 48056344 48056764 3133 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 48056767 48059812 19631 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr13 rmsk exon 48059792 48060624 5675 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr13 rmsk exon 48060627 48061289 4623 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 48061291 48061506 1431 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 48061507 48061883 2438 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr13 rmsk exon 48061884 48062289 2926 + . gene_id "HERVH_13q14.2a"; transcript_id "HERVH_13q14.2a"; locus "HERVH_13q14.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0979"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_13q14.2 ### chr13 rmsk gene 48066639 48072767 . + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0298"; model_cov "4983"; model_pct "95.5"; chr13 rmsk exon 48066639 48067063 2399 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0298"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-4"; repStart "13"; chr13 rmsk exon 48067068 48067306 951 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0298"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "-4987"; repStart "2"; chr13 rmsk exon 48067286 48067798 3058 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0298"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "343"; chr13 rmsk exon 48067799 48071465 28874 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0298"; repClass "LTR"; repEnd "4582"; repFamily "ERV1"; repLeft "-635"; repStart "958"; chr13 rmsk exon 48071757 48072351 28874 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0298"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4583"; chr13 rmsk exon 48072354 48072397 232 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0298"; repClass "LTR"; repEnd "-109"; repFamily "ERV1"; repLeft "-537"; repStart "-152"; chr13 rmsk exon 48072370 48072767 2065 + . gene_id "MER61_13q14.2"; transcript_id "MER61_13q14.2"; locus "MER61_13q14.2"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0298"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "14"; ### ERVLB4_13q14.2b ### chr13 rmsk gene 48291903 48293370 . - . gene_id "ERVLB4_13q14.2b"; transcript_id "ERVLB4_13q14.2b"; locus "ERVLB4_13q14.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1355"; model_cov "1127"; model_pct "19.7"; chr13 rmsk exon 48291903 48292390 1243 - . gene_id "ERVLB4_13q14.2b"; transcript_id "ERVLB4_13q14.2b"; locus "ERVLB4_13q14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1355"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "2771"; repStart "-2438"; chr13 rmsk exon 48292766 48293370 1607 - . gene_id "ERVLB4_13q14.2b"; transcript_id "ERVLB4_13q14.2b"; locus "ERVLB4_13q14.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1355"; repClass "LTR"; repEnd "2655"; repFamily "ERVL"; repLeft "2033"; repStart "-3059"; ### LTR57_13q14.2a ### chr13 rmsk gene 48634812 48635708 . + . gene_id "LTR57_13q14.2a"; transcript_id "LTR57_13q14.2a"; locus "LTR57_13q14.2a"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0134"; model_cov "870"; model_pct "16.3"; chr13 rmsk exon 48634812 48635708 3833 + . gene_id "LTR57_13q14.2a"; transcript_id "LTR57_13q14.2a"; locus "LTR57_13q14.2a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0134"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "-4163"; repStart "310"; ### MER101_13q14.2 ### chr13 rmsk gene 48714928 48717005 . - . gene_id "MER101_13q14.2"; transcript_id "MER101_13q14.2"; locus "MER101_13q14.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0293"; model_cov "2505"; model_pct "37.7"; chr13 rmsk exon 48714928 48717005 5975 - . gene_id "MER101_13q14.2"; transcript_id "MER101_13q14.2"; locus "MER101_13q14.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0293"; repClass "LTR"; repEnd "3731"; repFamily "ERV1"; repLeft "1226"; repStart "-2908"; ### LTR57_13q14.2b ### chr13 rmsk gene 48718676 48719603 . - . gene_id "LTR57_13q14.2b"; transcript_id "LTR57_13q14.2b"; locus "LTR57_13q14.2b"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0135"; model_cov "948"; model_pct "17.7"; chr13 rmsk exon 48718676 48719603 3901 - . gene_id "LTR57_13q14.2b"; transcript_id "LTR57_13q14.2b"; locus "LTR57_13q14.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0135"; repClass "LTR"; repEnd "1268"; repFamily "ERVL"; repLeft "320"; repStart "-4075"; ### ERVLE_13q14.2b ### chr13 rmsk gene 48779755 48780556 . - . gene_id "ERVLE_13q14.2b"; transcript_id "ERVLE_13q14.2b"; locus "ERVLE_13q14.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2829"; model_cov "841"; model_pct "14.8"; chr13 rmsk exon 48779755 48780556 2118 - . gene_id "ERVLE_13q14.2b"; transcript_id "ERVLE_13q14.2b"; locus "ERVLE_13q14.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2829"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "4317"; repStart "-509"; ### ERVLE_13q14.2c ### chr13 rmsk gene 48784454 48785752 . - . gene_id "ERVLE_13q14.2c"; transcript_id "ERVLE_13q14.2c"; locus "ERVLE_13q14.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2830"; model_cov "901"; model_pct "15.9"; chr13 rmsk exon 48784454 48784537 300 - . gene_id "ERVLE_13q14.2c"; transcript_id "ERVLE_13q14.2c"; locus "ERVLE_13q14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2830"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "3236"; repStart "-2341"; chr13 rmsk exon 48784749 48785386 1158 - . gene_id "ERVLE_13q14.2c"; transcript_id "ERVLE_13q14.2c"; locus "ERVLE_13q14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2830"; repClass "LTR"; repEnd "2965"; repFamily "ERVL"; repLeft "2189"; repStart "-2702"; chr13 rmsk exon 48785726 48785752 656 - . gene_id "ERVLE_13q14.2c"; transcript_id "ERVLE_13q14.2c"; locus "ERVLE_13q14.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2830"; repClass "LTR"; repEnd "2278"; repFamily "ERVL"; repLeft "2243"; repStart "-3389"; ### HERVH_13q14.2b ### chr13 rmsk gene 48866711 48872459 . - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0980"; model_cov "5336"; model_pct "69.2"; chr13 rmsk exon 48866711 48867093 1973 - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0980"; repClass "LTR"; repEnd "456"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chr13 rmsk exon 48867094 48867544 2863 - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0980"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7269"; repStart "0"; chr13 rmsk exon 48867527 48871312 16332 - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0980"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "1172"; repStart "-2693"; chr13 rmsk exon 48871300 48872027 1911 - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0980"; repClass "LTR"; repEnd "1045"; repFamily "ERV1"; repLeft "1"; repStart "-6668"; chr13 rmsk exon 48872028 48872459 3629 - . gene_id "HERVH_13q14.2b"; transcript_id "HERVH_13q14.2b"; locus "HERVH_13q14.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0980"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_13q14.2d ### chr13 rmsk gene 48935199 48936177 . + . gene_id "ERVLE_13q14.2d"; transcript_id "ERVLE_13q14.2d"; locus "ERVLE_13q14.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2831"; model_cov "642"; model_pct "11.3"; chr13 rmsk exon 48935199 48935826 1338 + . gene_id "ERVLE_13q14.2d"; transcript_id "ERVLE_13q14.2d"; locus "ERVLE_13q14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2831"; repClass "LTR"; repEnd "882"; repFamily "ERVL"; repLeft "-4785"; repStart "284"; chr13 rmsk exon 48936123 48936177 1338 + . gene_id "ERVLE_13q14.2d"; transcript_id "ERVLE_13q14.2d"; locus "ERVLE_13q14.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2831"; repClass "LTR"; repEnd "927"; repFamily "ERVL"; repLeft "-4740"; repStart "883"; ### HERVL_13q14.2 ### chr13 rmsk gene 49091428 49092606 . - . gene_id "HERVL_13q14.2"; transcript_id "HERVL_13q14.2"; locus "HERVL_13q14.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1026"; model_cov "988"; model_pct "17.5"; chr13 rmsk exon 49091428 49092402 7871 - . gene_id "HERVL_13q14.2"; transcript_id "HERVL_13q14.2"; locus "HERVL_13q14.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1026"; repClass "LTR"; repEnd "3879"; repFamily "ERVL"; repLeft "2891"; repStart "-1775"; chr13 rmsk exon 49092403 49092606 1428 - . gene_id "HERVL_13q14.2"; transcript_id "HERVL_13q14.2"; locus "HERVL_13q14.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1026"; repClass "LTR"; repEnd "214"; repFamily "ERVL"; repLeft "1"; repStart "-230"; ### ERV316A3_13q14.2b ### chr13 rmsk gene 49594590 49597448 . + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2180"; model_cov "1407"; model_pct "26.9"; chr13 rmsk exon 49594590 49594754 718 + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2180"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-71"; repStart "207"; chr13 rmsk exon 49594755 49595391 4386 + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2180"; repClass "LTR"; repEnd "4453"; repFamily "ERVL"; repLeft "-773"; repStart "3807"; chr13 rmsk exon 49596035 49596803 4386 + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2180"; repClass "LTR"; repEnd "5215"; repFamily "ERVL"; repLeft "-11"; repStart "4454"; chr13 rmsk exon 49597241 49597334 308 + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2180"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "-253"; repStart "96"; chr13 rmsk exon 49597332 49597448 439 + . gene_id "ERV316A3_13q14.2b"; transcript_id "ERV316A3_13q14.2b"; locus "ERV316A3_13q14.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2180"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "328"; ### ERV316A3_13q14.3a ### chr13 rmsk gene 50665127 50667268 . + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2182"; model_cov "828"; model_pct "15.8"; chr13 rmsk exon 50665127 50665377 660 + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2182"; repClass "LTR"; repEnd "3451"; repFamily "ERVL"; repLeft "-1775"; repStart "3185"; chr13 rmsk exon 50665369 50665533 507 + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2182"; repClass "LTR"; repEnd "4568"; repFamily "ERVL"; repLeft "-658"; repStart "4466"; chr13 rmsk exon 50665940 50666066 1182 + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2182"; repClass "LTR"; repEnd "4839"; repFamily "ERVL"; repLeft "-387"; repStart "4712"; chr13 rmsk exon 50666441 50666779 1182 + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2182"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "-53"; repStart "4840"; chr13 rmsk exon 50666843 50667268 1174 + . gene_id "ERV316A3_13q14.3a"; transcript_id "ERV316A3_13q14.3a"; locus "ERV316A3_13q14.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2182"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "7"; ### ERVLE_13q14.3 ### chr13 rmsk gene 50707648 50708204 . - . gene_id "ERVLE_13q14.3"; transcript_id "ERVLE_13q14.3"; locus "ERVLE_13q14.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2833"; model_cov "568"; model_pct "10.0"; chr13 rmsk exon 50707648 50708204 1143 - . gene_id "ERVLE_13q14.3"; transcript_id "ERVLE_13q14.3"; locus "ERVLE_13q14.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2833"; repClass "LTR"; repEnd "4924"; repFamily "ERVL"; repLeft "4356"; repStart "-743"; ### MER41_13q14.3 ### chr13 rmsk gene 51127811 51133258 . + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0417"; model_cov "2052"; model_pct "34.5"; chr13 rmsk exon 51127811 51128354 4184 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0417"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 51128355 51128735 2746 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0417"; repClass "LTR"; repEnd "384"; repFamily "ERV1"; repLeft "-5562"; repStart "1"; chr13 rmsk exon 51129341 51129482 953 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0417"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "-5426"; repStart "379"; chr13 rmsk exon 51129470 51129630 865 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0417"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "-5308"; repStart "473"; chr13 rmsk exon 51131061 51132160 9412 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0417"; repClass "LTR"; repEnd "5686"; repFamily "ERV1"; repLeft "-260"; repStart "4574"; chr13 rmsk exon 51132448 51132698 9412 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0417"; repClass "LTR"; repEnd "5938"; repFamily "ERV1"; repLeft "-8"; repStart "5687"; chr13 rmsk exon 51132703 51133258 4223 + . gene_id "MER41_13q14.3"; transcript_id "MER41_13q14.3"; locus "MER41_13q14.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0417"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_13q14.3a ### chr13 rmsk gene 51139993 51141517 . + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0620"; model_cov "889"; model_pct "13.5"; chr13 rmsk exon 51139993 51140452 3354 + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0620"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 51140456 51140981 2791 + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0620"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "-6124"; repStart "1"; chr13 rmsk exon 51140978 51141095 1096 + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0620"; repClass "LTR"; repEnd "2162"; repFamily "ERV1"; repLeft "-4436"; repStart "2086"; chr13 rmsk exon 51141140 51141372 1096 + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0620"; repClass "LTR"; repEnd "2361"; repFamily "ERV1"; repLeft "-4237"; repStart "2163"; chr13 rmsk exon 51141368 51141517 10378 + . gene_id "MER4_13q14.3a"; transcript_id "MER4_13q14.3a"; locus "MER4_13q14.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0620"; repClass "LTR"; repEnd "2884"; repFamily "ERV1"; repLeft "-3714"; repStart "2742"; ### MER4_13q14.3b ### chr13 rmsk gene 51141807 51146013 . + . gene_id "MER4_13q14.3b"; transcript_id "MER4_13q14.3b"; locus "MER4_13q14.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0621"; model_cov "5295"; model_pct "80.3"; chr13 rmsk exon 51141807 51142148 16656 + . gene_id "MER4_13q14.3b"; transcript_id "MER4_13q14.3b"; locus "MER4_13q14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0621"; repClass "LTR"; repEnd "1817"; repFamily "ERV1"; repLeft "-4781"; repStart "1302"; chr13 rmsk exon 51142394 51145553 16656 + . gene_id "MER4_13q14.3b"; transcript_id "MER4_13q14.3b"; locus "MER4_13q14.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0621"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "1818"; chr13 rmsk exon 51145555 51146013 3334 + . gene_id "MER4_13q14.3b"; transcript_id "MER4_13q14.3b"; locus "MER4_13q14.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0621"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_13q14.3a ### chr13 rmsk gene 51169866 51175006 . + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0981"; model_cov "4148"; model_pct "53.8"; chr13 rmsk exon 51169866 51170314 3506 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 51170317 51173284 17059 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr13 rmsk exon 51173264 51173413 947 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 51173413 51173938 2293 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4740"; chr13 rmsk exon 51173976 51174176 1362 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr13 rmsk exon 51174175 51174555 2552 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 51174556 51175006 3560 + . gene_id "HERVH_13q14.3a"; transcript_id "HERVH_13q14.3a"; locus "HERVH_13q14.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0981"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_13q14.3b ### chr13 rmsk gene 52957383 52959941 . - . gene_id "HERVH_13q14.3b"; transcript_id "HERVH_13q14.3b"; locus "HERVH_13q14.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0982"; model_cov "2400"; model_pct "31.1"; chr13 rmsk exon 52957383 52957843 3509 - . gene_id "HERVH_13q14.3b"; transcript_id "HERVH_13q14.3b"; locus "HERVH_13q14.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0982"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 52957844 52958397 3650 - . gene_id "HERVH_13q14.3b"; transcript_id "HERVH_13q14.3b"; locus "HERVH_13q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0982"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr13 rmsk exon 52958391 52958651 1570 - . gene_id "HERVH_13q14.3b"; transcript_id "HERVH_13q14.3b"; locus "HERVH_13q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0982"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr13 rmsk exon 52958652 52959941 6668 - . gene_id "HERVH_13q14.3b"; transcript_id "HERVH_13q14.3b"; locus "HERVH_13q14.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0982"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "4744"; repStart "-1394"; ### HERVH_13q14.3c ### chr13 rmsk gene 54127418 54133158 . - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0983"; model_cov "4836"; model_pct "62.7"; chr13 rmsk exon 54127418 54127815 2563 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 54127816 54128194 2285 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 54128193 54128408 1440 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 54128410 54128924 3503 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4635"; repStart "-2564"; chr13 rmsk exon 54128925 54129883 3414 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "4374"; repFamily "ERV1"; repLeft "3478"; repStart "-3339"; chr13 rmsk exon 54129874 54130045 960 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr13 rmsk exon 54130018 54132234 14523 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "793"; repStart "-4726"; chr13 rmsk exon 54132289 54132758 3177 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr13 rmsk exon 54132761 54133158 2547 - . gene_id "HERVH_13q14.3c"; transcript_id "HERVH_13q14.3c"; locus "HERVH_13q14.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0983"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_13q14.3d ### chr13 rmsk gene 54268142 54270743 . + . gene_id "HERVH_13q14.3d"; transcript_id "HERVH_13q14.3d"; locus "HERVH_13q14.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_0984"; model_cov "2229"; model_pct "28.9"; chr13 rmsk exon 54268142 54268524 2909 + . gene_id "HERVH_13q14.3d"; transcript_id "HERVH_13q14.3d"; locus "HERVH_13q14.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0984"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "-68"; repStart "1"; chr13 rmsk exon 54268525 54270262 12252 + . gene_id "HERVH_13q14.3d"; transcript_id "HERVH_13q14.3d"; locus "HERVH_13q14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0984"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1251"; chr13 rmsk exon 54270257 54270406 890 + . gene_id "HERVH_13q14.3d"; transcript_id "HERVH_13q14.3d"; locus "HERVH_13q14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0984"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 54270397 54270743 2253 + . gene_id "HERVH_13q14.3d"; transcript_id "HERVH_13q14.3d"; locus "HERVH_13q14.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0984"; repClass "LTR"; repEnd "3835"; repFamily "ERV1"; repLeft "-3878"; repStart "3492"; ### ERV316A3_13q14.3b ### chr13 rmsk gene 54648338 54651707 . - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2184"; model_cov "2295"; model_pct "43.9"; chr13 rmsk exon 54648338 54648405 321 - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2184"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "394"; repStart "0"; chr13 rmsk exon 54648412 54648823 3915 - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2184"; repClass "LTR"; repEnd "2646"; repFamily "ERVL"; repLeft "2230"; repStart "-2580"; chr13 rmsk exon 54649088 54649316 3915 - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2184"; repClass "LTR"; repEnd "2229"; repFamily "ERVL"; repLeft "1989"; repStart "-2997"; chr13 rmsk exon 54649653 54651056 3915 - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2184"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "580"; repStart "-3238"; chr13 rmsk exon 54651495 54651707 377 - . gene_id "ERV316A3_13q14.3b"; transcript_id "ERV316A3_13q14.3b"; locus "ERV316A3_13q14.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2184"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "359"; repStart "-4636"; ### ERVLE_13q21.1a ### chr13 rmsk gene 54790564 54793125 . - . gene_id "ERVLE_13q21.1a"; transcript_id "ERVLE_13q21.1a"; locus "ERVLE_13q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2834"; model_cov "1335"; model_pct "23.6"; chr13 rmsk exon 54790564 54790824 1221 - . gene_id "ERVLE_13q21.1a"; transcript_id "ERVLE_13q21.1a"; locus "ERVLE_13q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2834"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "1911"; repStart "-3500"; chr13 rmsk exon 54791998 54792797 2256 - . gene_id "ERVLE_13q21.1a"; transcript_id "ERVLE_13q21.1a"; locus "ERVLE_13q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2834"; repClass "LTR"; repEnd "1088"; repFamily "ERVL"; repLeft "228"; repStart "-4579"; chr13 rmsk exon 54792920 54793125 673 - . gene_id "ERVLE_13q21.1a"; transcript_id "ERVLE_13q21.1a"; locus "ERVLE_13q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2834"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "-45"; repStart "-5493"; ### HML3_13q21.1 ### chr13 rmsk gene 54918091 54920187 . - . gene_id "HML3_13q21.1"; transcript_id "HML3_13q21.1"; locus "HML3_13q21.1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0184"; model_cov "1798"; model_pct "29.9"; chr13 rmsk exon 54918091 54919216 8955 - . gene_id "HML3_13q21.1"; transcript_id "HML3_13q21.1"; locus "HML3_13q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0184"; repClass "LTR"; repEnd "2762"; repFamily "ERVK"; repLeft "1637"; repStart "-3259"; chr13 rmsk exon 54919217 54919893 4796 - . gene_id "HML3_13q21.1"; transcript_id "HML3_13q21.1"; locus "HML3_13q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0184"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "1"; repStart "-5347"; chr13 rmsk exon 54919894 54920187 2005 - . gene_id "HML3_13q21.1"; transcript_id "HML3_13q21.1"; locus "HML3_13q21.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0184"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "190"; repStart "0"; ### HERVFH21_13q21.1 ### chr13 rmsk gene 54937197 54942758 . - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0028"; model_cov "3624"; model_pct "55.5"; chr13 rmsk exon 54937197 54937597 2198 - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0028"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "66"; repStart "0"; chr13 rmsk exon 54937600 54938270 7650 - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0028"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "5862"; repStart "0"; chr13 rmsk exon 54939086 54941418 7650 - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0028"; repClass "LTR"; repEnd "5861"; repFamily "ERV1"; repLeft "3523"; repStart "-668"; chr13 rmsk exon 54942142 54942588 7650 - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0028"; repClass "LTR"; repEnd "3522"; repFamily "ERV1"; repLeft "3075"; repStart "-3007"; chr13 rmsk exon 54942586 54942758 1284 - . gene_id "HERVFH21_13q21.1"; transcript_id "HERVFH21_13q21.1"; locus "HERVFH21_13q21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0028"; repClass "LTR"; repEnd "2291"; repFamily "ERV1"; repLeft "2119"; repStart "-4238"; ### HERVW_13q21.1 ### chr13 rmsk gene 55053631 55061742 . + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0241"; model_cov "6572"; model_pct "76.2"; chr13 rmsk exon 55053631 55054427 5785 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 55054428 55060107 39010 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "5700"; repFamily "ERV1"; repLeft "-2926"; repStart "1"; chr13 rmsk exon 55060091 55060170 548 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "5600"; repFamily "ERV1"; repLeft "-3026"; repStart "5540"; chr13 rmsk exon 55060151 55060633 3978 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5535"; chr13 rmsk exon 55060627 55060665 294 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr13 rmsk exon 55060656 55060943 2362 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr13 rmsk exon 55060944 55061742 5862 + . gene_id "HERVW_13q21.1"; transcript_id "HERVW_13q21.1"; locus "HERVW_13q21.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0241"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q21.1b ### chr13 rmsk gene 55171230 55172333 . + . gene_id "ERVLE_13q21.1b"; transcript_id "ERVLE_13q21.1b"; locus "ERVLE_13q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2836"; model_cov "991"; model_pct "17.5"; chr13 rmsk exon 55171230 55172080 2007 + . gene_id "ERVLE_13q21.1b"; transcript_id "ERVLE_13q21.1b"; locus "ERVLE_13q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2836"; repClass "LTR"; repEnd "3318"; repFamily "ERVL"; repLeft "-2349"; repStart "2459"; chr13 rmsk exon 55172203 55172333 440 + . gene_id "ERVLE_13q21.1b"; transcript_id "ERVLE_13q21.1b"; locus "ERVLE_13q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2836"; repClass "LTR"; repEnd "3614"; repFamily "ERVL"; repLeft "-2053"; repStart "3482"; ### ERVLE_13q21.1c ### chr13 rmsk gene 55194362 55194834 . + . gene_id "ERVLE_13q21.1c"; transcript_id "ERVLE_13q21.1c"; locus "ERVLE_13q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2837"; model_cov "585"; model_pct "10.3"; chr13 rmsk exon 55194362 55194834 314 + . gene_id "ERVLE_13q21.1c"; transcript_id "ERVLE_13q21.1c"; locus "ERVLE_13q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2837"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "-3546"; repStart "1536"; ### ERVLE_13q21.1d ### chr13 rmsk gene 55227875 55230860 . + . gene_id "ERVLE_13q21.1d"; transcript_id "ERVLE_13q21.1d"; locus "ERVLE_13q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2838"; model_cov "3050"; model_pct "53.8"; chr13 rmsk exon 55227875 55230860 10115 + . gene_id "ERVLE_13q21.1d"; transcript_id "ERVLE_13q21.1d"; locus "ERVLE_13q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2838"; repClass "LTR"; repEnd "3055"; repFamily "ERVL"; repLeft "-2612"; repStart "5"; ### HERVL_13q21.1a ### chr13 rmsk gene 55445849 55452844 . + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1028"; model_cov "5652"; model_pct "100.0"; chr13 rmsk exon 55445849 55446253 2965 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr13 rmsk exon 55446369 55446408 2965 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; chr13 rmsk exon 55446409 55447381 41684 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "965"; repFamily "ERVL"; repLeft "-4689"; repStart "1"; chr13 rmsk exon 55447653 55452354 41684 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "966"; chr13 rmsk exon 55452355 55452747 2950 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-53"; repStart "1"; chr13 rmsk exon 55452793 55452844 2950 + . gene_id "HERVL_13q21.1a"; transcript_id "HERVL_13q21.1a"; locus "HERVL_13q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1028"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "392"; ### HERVH_13q21.1a ### chr13 rmsk gene 55578228 55584087 . - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0985"; model_cov "4916"; model_pct "63.7"; chr13 rmsk exon 55578228 55578676 3697 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 55578677 55579056 2503 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 55579055 55579271 1360 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 55579273 55579934 4305 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 55579937 55580439 3403 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 55580430 55580579 992 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 55580559 55583635 16546 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 55583638 55584087 3675 - . gene_id "HERVH_13q21.1a"; transcript_id "HERVH_13q21.1a"; locus "HERVH_13q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0985"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_13q21.1b ### chr13 rmsk gene 55586538 55592378 . - . gene_id "HERVL_13q21.1b"; transcript_id "HERVL_13q21.1b"; locus "HERVL_13q21.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1029"; model_cov "5447"; model_pct "96.3"; chr13 rmsk exon 55586538 55586570 261 - . gene_id "HERVL_13q21.1b"; transcript_id "HERVL_13q21.1b"; locus "HERVL_13q21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1029"; repClass "LTR"; repEnd "33"; repFamily "ERVL"; repLeft "1"; repStart "-420"; chr13 rmsk exon 55586571 55591975 40223 - . gene_id "HERVL_13q21.1b"; transcript_id "HERVL_13q21.1b"; locus "HERVL_13q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1029"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "207"; repStart "0"; chr13 rmsk exon 55591976 55592378 2847 - . gene_id "HERVL_13q21.1b"; transcript_id "HERVL_13q21.1b"; locus "HERVL_13q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1029"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-109"; repStart "-37"; ### HERVH_13q21.1b ### chr13 rmsk gene 55654931 55660802 . - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0986"; model_cov "5046"; model_pct "65.4"; chr13 rmsk exon 55654931 55655382 3481 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 55655383 55655762 2531 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 55655761 55655961 1325 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr13 rmsk exon 55655993 55656654 4303 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 55656657 55657160 3351 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 55657151 55660354 20391 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr13 rmsk exon 55660357 55660802 3346 - . gene_id "HERVH_13q21.1b"; transcript_id "HERVH_13q21.1b"; locus "HERVH_13q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0986"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVP71A_13q21.1 ### chr13 rmsk gene 55871314 55880218 . - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0064"; model_cov "7593"; model_pct "100.0"; chr13 rmsk exon 55871314 55871583 1742 - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0064"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "190"; repStart "0"; chr13 rmsk exon 55871583 55871665 603 - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0064"; repClass "LTR"; repEnd "83"; repFamily "ERV1"; repLeft "1"; repStart "-376"; chr13 rmsk exon 55871666 55874030 17498 - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0064"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "5181"; repStart "0"; chr13 rmsk exon 55874611 55879759 32563 - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0064"; repClass "LTR"; repEnd "5185"; repFamily "ERV1"; repLeft "1"; repStart "-2405"; chr13 rmsk exon 55879760 55880218 3086 - . gene_id "HERVP71A_13q21.1"; transcript_id "HERVP71A_13q21.1"; locus "HERVP71A_13q21.1"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0064"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_13q21.1e ### chr13 rmsk gene 56010054 56011068 . - . gene_id "ERVLE_13q21.1e"; transcript_id "ERVLE_13q21.1e"; locus "ERVLE_13q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2839"; model_cov "610"; model_pct "10.8"; chr13 rmsk exon 56010054 56010314 803 - . gene_id "ERVLE_13q21.1e"; transcript_id "ERVLE_13q21.1e"; locus "ERVLE_13q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2839"; repClass "LTR"; repEnd "4074"; repFamily "ERVL"; repLeft "3799"; repStart "-1593"; chr13 rmsk exon 56010318 56010501 314 - . gene_id "ERVLE_13q21.1e"; transcript_id "ERVLE_13q21.1e"; locus "ERVLE_13q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2839"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3874"; repStart "-1594"; chr13 rmsk exon 56010947 56011068 257 - . gene_id "ERVLE_13q21.1e"; transcript_id "ERVLE_13q21.1e"; locus "ERVLE_13q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2839"; repClass "LTR"; repEnd "2690"; repFamily "ERVL"; repLeft "2554"; repStart "-2977"; ### HERVH_13q21.1c ### chr13 rmsk gene 56040251 56046275 . + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0987"; model_cov "5121"; model_pct "66.4"; chr13 rmsk exon 56040251 56040701 3349 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 56040704 56043724 19347 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr13 rmsk exon 56043704 56044554 6116 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr13 rmsk exon 56044557 56045218 4281 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 56045216 56045446 1327 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr13 rmsk exon 56045445 56045824 2390 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 56045825 56046275 3235 + . gene_id "HERVH_13q21.1c"; transcript_id "HERVH_13q21.1c"; locus "HERVH_13q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0987"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_13q21.1d ### chr13 rmsk gene 56112411 56118259 . - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0988"; model_cov "5038"; model_pct "65.3"; chr13 rmsk exon 56112411 56112850 3169 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 56112851 56113228 2356 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 56113227 56113427 1380 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr13 rmsk exon 56113453 56114110 4151 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 56114113 56114606 3375 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr13 rmsk exon 56114606 56117806 20572 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr13 rmsk exon 56117809 56118259 3286 - . gene_id "HERVH_13q21.1d"; transcript_id "HERVH_13q21.1d"; locus "HERVH_13q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0988"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_13q21.1f ### chr13 rmsk gene 56133222 56136768 . - . gene_id "ERVLE_13q21.1f"; transcript_id "ERVLE_13q21.1f"; locus "ERVLE_13q21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2841"; model_cov "2345"; model_pct "41.4"; chr13 rmsk exon 56133222 56133718 612 - . gene_id "ERVLE_13q21.1f"; transcript_id "ERVLE_13q21.1f"; locus "ERVLE_13q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2841"; repClass "LTR"; repEnd "5013"; repFamily "ERVL"; repLeft "4458"; repStart "-654"; chr13 rmsk exon 56134426 56134943 612 - . gene_id "ERVLE_13q21.1f"; transcript_id "ERVLE_13q21.1f"; locus "ERVLE_13q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2841"; repClass "LTR"; repEnd "4380"; repFamily "ERVL"; repLeft "3767"; repStart "-1287"; chr13 rmsk exon 56135535 56135931 593 - . gene_id "ERVLE_13q21.1f"; transcript_id "ERVLE_13q21.1f"; locus "ERVLE_13q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2841"; repClass "LTR"; repEnd "3524"; repFamily "ERVL"; repLeft "3153"; repStart "-2143"; chr13 rmsk exon 56135982 56136768 734 - . gene_id "ERVLE_13q21.1f"; transcript_id "ERVLE_13q21.1f"; locus "ERVLE_13q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2841"; repClass "LTR"; repEnd "2688"; repFamily "ERVL"; repLeft "1882"; repStart "-2979"; ### ERVL_13q21.1a ### chr13 rmsk gene 56202549 56207311 . - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0343"; model_cov "2586"; model_pct "44.9"; chr13 rmsk exon 56202549 56202771 257 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "5059"; repStart "-460"; chr13 rmsk exon 56202965 56203206 322 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "4828"; repFamily "ERVL"; repLeft "4568"; repStart "-929"; chr13 rmsk exon 56203408 56203614 342 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "4215"; repFamily "ERVL"; repLeft "3951"; repStart "-1542"; chr13 rmsk exon 56204595 56205579 1039 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "3149"; repFamily "ERVL"; repLeft "2152"; repStart "-2608"; chr13 rmsk exon 56205613 56206107 579 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "2080"; repFamily "ERVL"; repLeft "1576"; repStart "-3677"; chr13 rmsk exon 56207000 56207311 500 - . gene_id "ERVL_13q21.1a"; transcript_id "ERVL_13q21.1a"; locus "ERVL_13q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0343"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "232"; repStart "-5202"; ### ERV316A3_13q21.1a ### chr13 rmsk gene 56282347 56283388 . - . gene_id "ERV316A3_13q21.1a"; transcript_id "ERV316A3_13q21.1a"; locus "ERV316A3_13q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2185"; model_cov "1082"; model_pct "20.7"; chr13 rmsk exon 56282347 56283388 1224 - . gene_id "ERV316A3_13q21.1a"; transcript_id "ERV316A3_13q21.1a"; locus "ERV316A3_13q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2185"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "3539"; repStart "-605"; ### HERVL74_13q21.1 ### chr13 rmsk gene 56693248 56695910 . + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0082"; model_cov "2182"; model_pct "38.4"; chr13 rmsk exon 56693248 56693517 1422 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "273"; repFamily "ERVL"; repLeft "-187"; repStart "1"; chr13 rmsk exon 56693558 56693753 840 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "0"; repStart "262"; chr13 rmsk exon 56693754 56693939 822 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "-5500"; repStart "1"; chr13 rmsk exon 56693963 56694384 2269 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "725"; repFamily "ERVL"; repLeft "-4960"; repStart "277"; chr13 rmsk exon 56694385 56695190 4075 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-2280"; repStart "2594"; chr13 rmsk exon 56695184 56695910 3252 + . gene_id "HERVL74_13q21.1"; transcript_id "HERVL74_13q21.1"; locus "HERVL74_13q21.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0082"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "-1382"; repStart "3564"; ### ERVLB4_13q21.1 ### chr13 rmsk gene 56921458 56923992 . + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1359"; model_cov "1002"; model_pct "17.5"; chr13 rmsk exon 56921458 56921838 1869 + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1359"; repClass "LTR"; repEnd "5093"; repFamily "ERVL"; repLeft "-621"; repStart "4713"; chr13 rmsk exon 56922587 56922978 2058 + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1359"; repClass "LTR"; repEnd "5577"; repFamily "ERVL"; repLeft "-137"; repStart "5090"; chr13 rmsk exon 56923383 56923520 2058 + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1359"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5578"; chr13 rmsk exon 56923521 56923906 1662 + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1359"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-37"; repStart "1"; chr13 rmsk exon 56923953 56923992 1662 + . gene_id "ERVLB4_13q21.1"; transcript_id "ERVLB4_13q21.1"; locus "ERVLB4_13q21.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1359"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "378"; ### MER61_13q21.1 ### chr13 rmsk gene 56969845 56975305 . + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0299"; model_cov "4396"; model_pct "84.3"; chr13 rmsk exon 56969845 56970168 1699 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0299"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 56970169 56970500 2362 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0299"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-4871"; repStart "1"; chr13 rmsk exon 56970629 56970756 2362 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0299"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "-4757"; repStart "347"; chr13 rmsk exon 56971064 56971180 2362 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0299"; repClass "LTR"; repEnd "566"; repFamily "ERV1"; repLeft "-4651"; repStart "461"; chr13 rmsk exon 56971151 56974979 13703 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0299"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1384"; chr13 rmsk exon 56974980 56975305 1616 + . gene_id "MER61_13q21.1"; transcript_id "MER61_13q21.1"; locus "MER61_13q21.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0299"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### MER41_13q21.1 ### chr13 rmsk gene 56980550 56981622 . + . gene_id "MER41_13q21.1"; transcript_id "MER41_13q21.1"; locus "MER41_13q21.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0418"; model_cov "1137"; model_pct "19.1"; chr13 rmsk exon 56980550 56981622 5769 + . gene_id "MER41_13q21.1"; transcript_id "MER41_13q21.1"; locus "MER41_13q21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0418"; repClass "LTR"; repEnd "3304"; repFamily "ERV1"; repLeft "-2642"; repStart "2167"; ### ERV316A3_13q21.1b ### chr13 rmsk gene 57130792 57131810 . - . gene_id "ERV316A3_13q21.1b"; transcript_id "ERV316A3_13q21.1b"; locus "ERV316A3_13q21.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2187"; model_cov "1005"; model_pct "19.2"; chr13 rmsk exon 57130792 57131810 763 - . gene_id "ERV316A3_13q21.1b"; transcript_id "ERV316A3_13q21.1b"; locus "ERV316A3_13q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2187"; repClass "LTR"; repEnd "2248"; repFamily "ERVL"; repLeft "1243"; repStart "-2978"; ### ERV316A3_13q21.1c ### chr13 rmsk gene 57505844 57510168 . - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2189"; model_cov "2877"; model_pct "55.1"; chr13 rmsk exon 57505844 57505939 262 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "313"; repStart "-39"; chr13 rmsk exon 57506388 57506697 442 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "4717"; repStart "-160"; chr13 rmsk exon 57507252 57507341 1937 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "4306"; repStart "-832"; chr13 rmsk exon 57507710 57509351 3070 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "2497"; repStart "-921"; chr13 rmsk exon 57509355 57509565 588 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "2759"; repFamily "ERVL"; repLeft "2550"; repStart "-2467"; chr13 rmsk exon 57509681 57509976 551 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "2479"; repFamily "ERVL"; repLeft "2183"; repStart "-2747"; chr13 rmsk exon 57510048 57510168 429 - . gene_id "ERV316A3_13q21.1c"; transcript_id "ERV316A3_13q21.1c"; locus "ERV316A3_13q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2189"; repClass "LTR"; repEnd "2108"; repFamily "ERVL"; repLeft "1981"; repStart "-3118"; ### ERVL_13q21.1b ### chr13 rmsk gene 57746646 57749686 . + . gene_id "ERVL_13q21.1b"; transcript_id "ERVL_13q21.1b"; locus "ERVL_13q21.1b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0344"; model_cov "1977"; model_pct "34.3"; chr13 rmsk exon 57746646 57747072 2377 + . gene_id "ERVL_13q21.1b"; transcript_id "ERVL_13q21.1b"; locus "ERVL_13q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0344"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-86"; repStart "3"; chr13 rmsk exon 57747074 57749064 10213 + . gene_id "ERVL_13q21.1b"; transcript_id "ERVL_13q21.1b"; locus "ERVL_13q21.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0344"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "3779"; chr13 rmsk exon 57749068 57749521 2242 + . gene_id "ERVL_13q21.1b"; transcript_id "ERVL_13q21.1b"; locus "ERVL_13q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0344"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "9"; chr13 rmsk exon 57749639 57749686 2242 + . gene_id "ERVL_13q21.1b"; transcript_id "ERVL_13q21.1b"; locus "ERVL_13q21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0344"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "458"; ### ERVLE_13q21.1g ### chr13 rmsk gene 57876985 57879456 . + . gene_id "ERVLE_13q21.1g"; transcript_id "ERVLE_13q21.1g"; locus "ERVLE_13q21.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2843"; model_cov "1794"; model_pct "31.7"; chr13 rmsk exon 57876985 57877538 701 + . gene_id "ERVLE_13q21.1g"; transcript_id "ERVLE_13q21.1g"; locus "ERVLE_13q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2843"; repClass "LTR"; repEnd "1599"; repFamily "ERVL"; repLeft "-4068"; repStart "1045"; chr13 rmsk exon 57877641 57877796 289 + . gene_id "ERVLE_13q21.1g"; transcript_id "ERVLE_13q21.1g"; locus "ERVLE_13q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2843"; repClass "LTR"; repEnd "1870"; repFamily "ERVL"; repLeft "-3797"; repStart "1714"; chr13 rmsk exon 57877855 57878210 524 + . gene_id "ERVLE_13q21.1g"; transcript_id "ERVLE_13q21.1g"; locus "ERVLE_13q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2843"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3261"; repStart "1961"; chr13 rmsk exon 57878835 57879456 1098 + . gene_id "ERVLE_13q21.1g"; transcript_id "ERVLE_13q21.1g"; locus "ERVLE_13q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2843"; repClass "LTR"; repEnd "5052"; repFamily "ERVL"; repLeft "-615"; repStart "4413"; ### ERV316A3_13q21.1d ### chr13 rmsk gene 58067414 58070575 . + . gene_id "ERV316A3_13q21.1d"; transcript_id "ERV316A3_13q21.1d"; locus "ERV316A3_13q21.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2191"; model_cov "2538"; model_pct "48.6"; chr13 rmsk exon 58067414 58069282 4523 + . gene_id "ERV316A3_13q21.1d"; transcript_id "ERV316A3_13q21.1d"; locus "ERV316A3_13q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2191"; repClass "LTR"; repEnd "4051"; repFamily "ERVL"; repLeft "-1175"; repStart "2154"; chr13 rmsk exon 58069504 58069645 407 + . gene_id "ERV316A3_13q21.1d"; transcript_id "ERV316A3_13q21.1d"; locus "ERV316A3_13q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2191"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "-653"; repStart "4473"; chr13 rmsk exon 58069690 58070168 805 + . gene_id "ERV316A3_13q21.1d"; transcript_id "ERV316A3_13q21.1d"; locus "ERV316A3_13q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2191"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4684"; chr13 rmsk exon 58070182 58070575 336 + . gene_id "ERV316A3_13q21.1d"; transcript_id "ERV316A3_13q21.1d"; locus "ERV316A3_13q21.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2191"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-8"; repStart "42"; ### ERVLE_13q21.1h ### chr13 rmsk gene 58344026 58344744 . + . gene_id "ERVLE_13q21.1h"; transcript_id "ERVLE_13q21.1h"; locus "ERVLE_13q21.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2846"; model_cov "719"; model_pct "12.7"; chr13 rmsk exon 58344026 58344744 859 + . gene_id "ERVLE_13q21.1h"; transcript_id "ERVLE_13q21.1h"; locus "ERVLE_13q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2846"; repClass "LTR"; repEnd "1531"; repFamily "ERVL"; repLeft "-4136"; repStart "812"; ### HUERSP2_13q21.1 ### chr13 rmsk gene 58856204 58861398 . - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0101"; model_cov "2179"; model_pct "70.6"; chr13 rmsk exon 58856204 58857119 5097 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 58857120 58857360 1647 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2846"; repStart "0"; chr13 rmsk exon 58857359 58858151 9613 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "2020"; repFamily "ERV1"; repLeft "1217"; repStart "-1068"; chr13 rmsk exon 58859413 58860380 9613 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "1216"; repFamily "ERV1"; repLeft "204"; repStart "-1872"; chr13 rmsk exon 58860398 58860525 502 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "127"; repFamily "ERV1"; repLeft "5"; repStart "-2961"; chr13 rmsk exon 58860529 58861398 4993 - . gene_id "HUERSP2_13q21.1"; transcript_id "HUERSP2_13q21.1"; locus "HUERSP2_13q21.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0101"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_13q21.2a ### chr13 rmsk gene 59515241 59516046 . + . gene_id "HUERSP3B_13q21.2a"; transcript_id "HUERSP3B_13q21.2a"; locus "HUERSP3B_13q21.2a"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0109"; model_cov "846"; model_pct "11.4"; chr13 rmsk exon 59515241 59516046 4937 + . gene_id "HUERSP3B_13q21.2a"; transcript_id "HUERSP3B_13q21.2a"; locus "HUERSP3B_13q21.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0109"; repClass "LTR"; repEnd "7085"; repFamily "ERV1"; repLeft "-333"; repStart "6239"; ### ERVLE_13q21.2a ### chr13 rmsk gene 59579867 59580933 . - . gene_id "ERVLE_13q21.2a"; transcript_id "ERVLE_13q21.2a"; locus "ERVLE_13q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2847"; model_cov "846"; model_pct "14.9"; chr13 rmsk exon 59579867 59580383 1088 - . gene_id "ERVLE_13q21.2a"; transcript_id "ERVLE_13q21.2a"; locus "ERVLE_13q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2847"; repClass "LTR"; repEnd "5331"; repFamily "ERVL"; repLeft "4789"; repStart "-336"; chr13 rmsk exon 59580636 59580933 1130 - . gene_id "ERVLE_13q21.2a"; transcript_id "ERVLE_13q21.2a"; locus "ERVLE_13q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2847"; repClass "LTR"; repEnd "4720"; repFamily "ERVL"; repLeft "4416"; repStart "-947"; ### HERV30_13q21.2 ### chr13 rmsk gene 60266187 60268720 . - . gene_id "HERV30_13q21.2"; transcript_id "HERV30_13q21.2"; locus "HERV30_13q21.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0021"; model_cov "1730"; model_pct "21.0"; chr13 rmsk exon 60266187 60266265 449 - . gene_id "HERV30_13q21.2"; transcript_id "HERV30_13q21.2"; locus "HERV30_13q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0021"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "645"; repStart "0"; chr13 rmsk exon 60266268 60268006 13183 - . gene_id "HERV30_13q21.2"; transcript_id "HERV30_13q21.2"; locus "HERV30_13q21.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0021"; repClass "LTR"; repEnd "1731"; repFamily "ERV1"; repLeft "1"; repStart "-6526"; chr13 rmsk exon 60268007 60268720 4867 - . gene_id "HERV30_13q21.2"; transcript_id "HERV30_13q21.2"; locus "HERV30_13q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0021"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_13q21.2 ### chr13 rmsk gene 60495912 60501139 . + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1030"; model_cov "4103"; model_pct "72.6"; chr13 rmsk exon 60495912 60496288 2935 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "2"; chr13 rmsk exon 60496345 60496381 2935 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "387"; chr13 rmsk exon 60496382 60496808 5351 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "-5227"; repStart "1"; chr13 rmsk exon 60497552 60497820 5351 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "691"; repFamily "ERVL"; repLeft "-4963"; repStart "428"; chr13 rmsk exon 60497819 60500000 17032 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "3165"; repFamily "ERVL"; repLeft "-2489"; repStart "950"; chr13 rmsk exon 60500001 60501139 7984 + . gene_id "HERVL_13q21.2"; transcript_id "HERVL_13q21.2"; locus "HERVL_13q21.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1030"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "-1289"; repStart "3166"; ### HUERSP3B_13q21.2b ### chr13 rmsk gene 60501140 60502662 . - . gene_id "HUERSP3B_13q21.2b"; transcript_id "HUERSP3B_13q21.2b"; locus "HUERSP3B_13q21.2b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0111"; model_cov "1510"; model_pct "20.4"; chr13 rmsk exon 60501140 60501181 320 - . gene_id "HUERSP3B_13q21.2b"; transcript_id "HUERSP3B_13q21.2b"; locus "HUERSP3B_13q21.2b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0111"; repClass "LTR"; repEnd "42"; repFamily "ERV1"; repLeft "1"; repStart "-570"; chr13 rmsk exon 60501840 60502662 16401 - . gene_id "HUERSP3B_13q21.2b"; transcript_id "HUERSP3B_13q21.2b"; locus "HUERSP3B_13q21.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0111"; repClass "LTR"; repEnd "6944"; repFamily "ERV1"; repLeft "5434"; repStart "-474"; ### HUERSP3B_13q21.2c ### chr13 rmsk gene 60502735 60504633 . - . gene_id "HUERSP3B_13q21.2c"; transcript_id "HUERSP3B_13q21.2c"; locus "HUERSP3B_13q21.2c"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0112"; model_cov "3492"; model_pct "47.1"; chr13 rmsk exon 60502735 60504633 16401 - . gene_id "HUERSP3B_13q21.2c"; transcript_id "HUERSP3B_13q21.2c"; locus "HUERSP3B_13q21.2c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0112"; repClass "LTR"; repEnd "6944"; repFamily "ERV1"; repLeft "3452"; repStart "-474"; ### ERVLE_13q21.2b ### chr13 rmsk gene 60651083 60656502 . + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2848"; model_cov "4017"; model_pct "70.9"; chr13 rmsk exon 60651083 60652298 4373 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "2453"; repFamily "ERVL"; repLeft "-3214"; repStart "1266"; chr13 rmsk exon 60652661 60653103 1414 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "-2767"; repStart "2466"; chr13 rmsk exon 60653102 60653684 5372 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "3677"; repFamily "ERVL"; repLeft "-1990"; repStart "3051"; chr13 rmsk exon 60654033 60654873 5372 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "4487"; repFamily "ERVL"; repLeft "-1180"; repStart "3678"; chr13 rmsk exon 60655178 60655349 5372 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "-1007"; repStart "4488"; chr13 rmsk exon 60655381 60655888 1628 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "5391"; repFamily "ERVL"; repLeft "-276"; repStart "4865"; chr13 rmsk exon 60656047 60656195 1628 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "5556"; repFamily "ERVL"; repLeft "-111"; repStart "5392"; chr13 rmsk exon 60656404 60656502 431 + . gene_id "ERVLE_13q21.2b"; transcript_id "ERVLE_13q21.2b"; locus "ERVLE_13q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2848"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "-3"; repStart "5565"; ### ERVLE_13q21.2c ### chr13 rmsk gene 60734796 60736901 . - . gene_id "ERVLE_13q21.2c"; transcript_id "ERVLE_13q21.2c"; locus "ERVLE_13q21.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2850"; model_cov "1728"; model_pct "30.5"; chr13 rmsk exon 60734796 60734930 405 - . gene_id "ERVLE_13q21.2c"; transcript_id "ERVLE_13q21.2c"; locus "ERVLE_13q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2850"; repClass "LTR"; repEnd "5587"; repFamily "ERVL"; repLeft "5445"; repStart "-80"; chr13 rmsk exon 60735272 60735596 1901 - . gene_id "ERVLE_13q21.2c"; transcript_id "ERVLE_13q21.2c"; locus "ERVLE_13q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2850"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "4715"; repStart "-563"; chr13 rmsk exon 60735907 60736901 1901 - . gene_id "ERVLE_13q21.2c"; transcript_id "ERVLE_13q21.2c"; locus "ERVLE_13q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2850"; repClass "LTR"; repEnd "4714"; repFamily "ERVL"; repLeft "3517"; repStart "-953"; ### ERVLE_13q21.2d ### chr13 rmsk gene 60746991 60748490 . - . gene_id "ERVLE_13q21.2d"; transcript_id "ERVLE_13q21.2d"; locus "ERVLE_13q21.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2851"; model_cov "1064"; model_pct "18.8"; chr13 rmsk exon 60746991 60747111 509 - . gene_id "ERVLE_13q21.2d"; transcript_id "ERVLE_13q21.2d"; locus "ERVLE_13q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2851"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "5364"; repStart "-181"; chr13 rmsk exon 60747134 60747698 1447 - . gene_id "ERVLE_13q21.2d"; transcript_id "ERVLE_13q21.2d"; locus "ERVLE_13q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2851"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "4716"; repStart "-287"; chr13 rmsk exon 60748225 60748490 790 - . gene_id "ERVLE_13q21.2d"; transcript_id "ERVLE_13q21.2d"; locus "ERVLE_13q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2851"; repClass "LTR"; repEnd "4571"; repFamily "ERVL"; repLeft "4293"; repStart "-1096"; ### HERVH_13q21.2a ### chr13 rmsk gene 61088458 61094439 . + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0989"; model_cov "5261"; model_pct "68.2"; chr13 rmsk exon 61088458 61088865 2699 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 61088868 61092776 23259 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr13 rmsk exon 61092779 61093436 4335 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 61093438 61093650 1368 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 61093651 61094029 2339 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr13 rmsk exon 61094030 61094439 2746 + . gene_id "HERVH_13q21.2a"; transcript_id "HERVH_13q21.2a"; locus "HERVH_13q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0989"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_13q21.2 ### chr13 rmsk gene 61112586 61118592 . + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0419"; model_cov "3422"; model_pct "57.6"; chr13 rmsk exon 61112586 61112815 1235 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0419"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "396"; chr13 rmsk exon 61112816 61113231 2753 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0419"; repClass "LTR"; repEnd "422"; repFamily "ERV1"; repLeft "-5524"; repStart "1"; chr13 rmsk exon 61115186 61117124 11775 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0419"; repClass "LTR"; repEnd "5696"; repFamily "ERV1"; repLeft "-250"; repStart "2941"; chr13 rmsk exon 61117432 61117528 11775 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0419"; repClass "LTR"; repEnd "5772"; repFamily "ERV1"; repLeft "-174"; repStart "5697"; chr13 rmsk exon 61117856 61118031 11775 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0419"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5773"; chr13 rmsk exon 61118032 61118592 3371 + . gene_id "MER41_13q21.2"; transcript_id "MER41_13q21.2"; locus "MER41_13q21.2"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0419"; repClass "LTR"; repEnd "527"; repFamily "ERV1"; repLeft "-107"; repStart "1"; ### HERVH_13q21.2b ### chr13 rmsk gene 61205682 61211279 . + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0990"; model_cov "4862"; model_pct "63.0"; chr13 rmsk exon 61205682 61206083 2570 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 61206086 61206458 2781 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "372"; repFamily "ERV1"; repLeft "-7341"; repStart "1"; chr13 rmsk exon 61206453 61210287 23090 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1275"; chr13 rmsk exon 61210289 61210504 1432 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 61210498 61210876 2318 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7315"; chr13 rmsk exon 61210877 61211279 2449 + . gene_id "HERVH_13q21.2b"; transcript_id "HERVH_13q21.2b"; locus "HERVH_13q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0990"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_13q21.2e ### chr13 rmsk gene 61274540 61279443 . + . gene_id "ERVLE_13q21.2e"; transcript_id "ERVLE_13q21.2e"; locus "ERVLE_13q21.2e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2852"; model_cov "4028"; model_pct "71.1"; chr13 rmsk exon 61274540 61275791 3619 + . gene_id "ERVLE_13q21.2e"; transcript_id "ERVLE_13q21.2e"; locus "ERVLE_13q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2852"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "-2986"; repStart "1327"; chr13 rmsk exon 61276278 61276406 526 + . gene_id "ERVLE_13q21.2e"; transcript_id "ERVLE_13q21.2e"; locus "ERVLE_13q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2852"; repClass "LTR"; repEnd "2804"; repFamily "ERVL"; repLeft "-2863"; repStart "2676"; chr13 rmsk exon 61276414 61278797 6809 + . gene_id "ERVLE_13q21.2e"; transcript_id "ERVLE_13q21.2e"; locus "ERVLE_13q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2852"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "3119"; chr13 rmsk exon 61278903 61279443 974 + . gene_id "ERVLE_13q21.2e"; transcript_id "ERVLE_13q21.2e"; locus "ERVLE_13q21.2e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2852"; repClass "LTR"; repEnd "656"; repFamily "ERVL"; repLeft "-7"; repStart "101"; ### LTR57_13q21.2 ### chr13 rmsk gene 61291547 61296630 . - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0136"; model_cov "4430"; model_pct "82.9"; chr13 rmsk exon 61291547 61291951 2358 - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0136"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 61291952 61293295 8297 - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0136"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "3971"; repStart "0"; chr13 rmsk exon 61293284 61295534 7972 - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0136"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "858"; repStart "-2176"; chr13 rmsk exon 61295527 61296226 3870 - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0136"; repClass "LTR"; repEnd "750"; repFamily "ERVL"; repLeft "1"; repStart "-4593"; chr13 rmsk exon 61296227 61296630 2418 - . gene_id "LTR57_13q21.2"; transcript_id "LTR57_13q21.2"; locus "LTR57_13q21.2"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0136"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP2_13q21.2 ### chr13 rmsk gene 61523186 61526311 . - . gene_id "HUERSP2_13q21.2"; transcript_id "HUERSP2_13q21.2"; locus "HUERSP2_13q21.2"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0102"; model_cov "3086"; model_pct "99.9"; chr13 rmsk exon 61523186 61526311 16546 - . gene_id "HUERSP2_13q21.2"; transcript_id "HUERSP2_13q21.2"; locus "HUERSP2_13q21.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0102"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### ERVLE_13q21.2f ### chr13 rmsk gene 61548941 61553346 . + . gene_id "ERVLE_13q21.2f"; transcript_id "ERVLE_13q21.2f"; locus "ERVLE_13q21.2f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2853"; model_cov "2141"; model_pct "37.8"; chr13 rmsk exon 61548941 61550023 5448 + . gene_id "ERVLE_13q21.2f"; transcript_id "ERVLE_13q21.2f"; locus "ERVLE_13q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2853"; repClass "LTR"; repEnd "2510"; repFamily "ERVL"; repLeft "-3157"; repStart "1428"; chr13 rmsk exon 61550275 61551164 5448 + . gene_id "ERVLE_13q21.2f"; transcript_id "ERVLE_13q21.2f"; locus "ERVLE_13q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2853"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "-2207"; repStart "2511"; chr13 rmsk exon 61552612 61552721 376 + . gene_id "ERVLE_13q21.2f"; transcript_id "ERVLE_13q21.2f"; locus "ERVLE_13q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2853"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "5542"; chr13 rmsk exon 61552722 61553346 1313 + . gene_id "ERVLE_13q21.2f"; transcript_id "ERVLE_13q21.2f"; locus "ERVLE_13q21.2f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2853"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### MER61_13q21.2 ### chr13 rmsk gene 61666420 61671508 . - . gene_id "MER61_13q21.2"; transcript_id "MER61_13q21.2"; locus "MER61_13q21.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0300"; model_cov "4538"; model_pct "87.0"; chr13 rmsk exon 61666420 61666752 1710 - . gene_id "MER61_13q21.2"; transcript_id "MER61_13q21.2"; locus "MER61_13q21.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0300"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 61666753 61670500 25841 - . gene_id "MER61_13q21.2"; transcript_id "MER61_13q21.2"; locus "MER61_13q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0300"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1412"; repStart "0"; chr13 rmsk exon 61670538 61671190 1894 - . gene_id "MER61_13q21.2"; transcript_id "MER61_13q21.2"; locus "MER61_13q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0300"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "1"; repStart "-4483"; chr13 rmsk exon 61671191 61671508 1409 - . gene_id "MER61_13q21.2"; transcript_id "MER61_13q21.2"; locus "MER61_13q21.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0300"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_13q21.2 ### chr13 rmsk gene 61705516 61712096 . + . gene_id "ERVLB4_13q21.2"; transcript_id "ERVLB4_13q21.2"; locus "ERVLB4_13q21.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1360"; model_cov "5706"; model_pct "99.9"; chr13 rmsk exon 61705516 61705620 506 + . gene_id "ERVLB4_13q21.2"; transcript_id "ERVLB4_13q21.2"; locus "ERVLB4_13q21.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1360"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-63"; repStart "250"; chr13 rmsk exon 61705667 61709665 29647 + . gene_id "ERVLB4_13q21.2"; transcript_id "ERVLB4_13q21.2"; locus "ERVLB4_13q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1360"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "-1783"; repStart "7"; chr13 rmsk exon 61709959 61711716 29647 + . gene_id "ERVLB4_13q21.2"; transcript_id "ERVLB4_13q21.2"; locus "ERVLB4_13q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1360"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3932"; chr13 rmsk exon 61711746 61712096 1012 + . gene_id "ERVLB4_13q21.2"; transcript_id "ERVLB4_13q21.2"; locus "ERVLB4_13q21.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1360"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "-56"; ### ERVLE_13q21.2g ### chr13 rmsk gene 61790950 61794499 . - . gene_id "ERVLE_13q21.2g"; transcript_id "ERVLE_13q21.2g"; locus "ERVLE_13q21.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2854"; model_cov "2125"; model_pct "37.5"; chr13 rmsk exon 61790950 61792319 917 - . gene_id "ERVLE_13q21.2g"; transcript_id "ERVLE_13q21.2g"; locus "ERVLE_13q21.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2854"; repClass "LTR"; repEnd "4780"; repFamily "ERVL"; repLeft "3301"; repStart "-887"; chr13 rmsk exon 61793574 61794034 514 - . gene_id "ERVLE_13q21.2g"; transcript_id "ERVLE_13q21.2g"; locus "ERVLE_13q21.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2854"; repClass "LTR"; repEnd "2032"; repFamily "ERVL"; repLeft "1520"; repStart "-3635"; chr13 rmsk exon 61794365 61794499 306 - . gene_id "ERVLE_13q21.2g"; transcript_id "ERVLE_13q21.2g"; locus "ERVLE_13q21.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2854"; repClass "LTR"; repEnd "1151"; repFamily "ERVL"; repLeft "1017"; repStart "-4516"; ### ERVLE_13q21.31a ### chr13 rmsk gene 61885041 61886095 . + . gene_id "ERVLE_13q21.31a"; transcript_id "ERVLE_13q21.31a"; locus "ERVLE_13q21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2856"; model_cov "1073"; model_pct "18.9"; chr13 rmsk exon 61885041 61886095 1166 + . gene_id "ERVLE_13q21.31a"; transcript_id "ERVLE_13q21.31a"; locus "ERVLE_13q21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2856"; repClass "LTR"; repEnd "4194"; repFamily "ERVL"; repLeft "-1473"; repStart "3121"; ### HERVL40_13q21.31a ### chr13 rmsk gene 62009453 62012832 . - . gene_id "HERVL40_13q21.31a"; transcript_id "HERVL40_13q21.31a"; locus "HERVL40_13q21.31a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0336"; model_cov "3253"; model_pct "58.8"; chr13 rmsk exon 62009453 62010071 3730 - . gene_id "HERVL40_13q21.31a"; transcript_id "HERVL40_13q21.31a"; locus "HERVL40_13q21.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0336"; repClass "LTR"; repEnd "4253"; repFamily "ERVL"; repLeft "3597"; repStart "-1277"; chr13 rmsk exon 62010115 62012664 3730 - . gene_id "HERVL40_13q21.31a"; transcript_id "HERVL40_13q21.31a"; locus "HERVL40_13q21.31a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0336"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "999"; repStart "-1934"; chr13 rmsk exon 62012680 62012832 577 - . gene_id "HERVL40_13q21.31a"; transcript_id "HERVL40_13q21.31a"; locus "HERVL40_13q21.31a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0336"; repClass "LTR"; repEnd "158"; repFamily "ERVL"; repLeft "1"; repStart "-361"; ### MER4_13q21.31 ### chr13 rmsk gene 62130597 62139857 . + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0625"; model_cov "6348"; model_pct "96.2"; chr13 rmsk exon 62130597 62130927 2448 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0625"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "-199"; repStart "1"; chr13 rmsk exon 62131306 62131510 2448 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0625"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "466"; chr13 rmsk exon 62131514 62131748 2253 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "266"; repFamily "ERV1"; repLeft "-6332"; repStart "1"; chr13 rmsk exon 62132167 62132924 6653 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "1113"; repFamily "ERV1"; repLeft "-5485"; repStart "267"; chr13 rmsk exon 62132968 62134677 6653 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "3167"; repFamily "ERV1"; repLeft "-3431"; repStart "970"; chr13 rmsk exon 62135278 62135768 2895 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "3684"; repFamily "ERV1"; repLeft "-2914"; repStart "3168"; chr13 rmsk exon 62135763 62137460 6074 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "5841"; repFamily "ERV1"; repLeft "-757"; repStart "4172"; chr13 rmsk exon 62138405 62139266 4651 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0625"; repClass "LTR"; repEnd "6561"; repFamily "ERV1"; repLeft "-37"; repStart "5706"; chr13 rmsk exon 62139353 62139857 2442 + . gene_id "MER4_13q21.31"; transcript_id "MER4_13q21.31"; locus "MER4_13q21.31"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0625"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV30_13q21.31 ### chr13 rmsk gene 62149474 62156146 . + . gene_id "HERV30_13q21.31"; transcript_id "HERV30_13q21.31"; locus "HERV30_13q21.31"; category "internal"; intModel "HERV30-int"; locid "HERV30-int_0022"; model_cov "5427"; model_pct "65.7"; chr13 rmsk exon 62149474 62151194 6413 + . gene_id "HERV30_13q21.31"; transcript_id "HERV30_13q21.31"; locus "HERV30_13q21.31"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0022"; repClass "LTR"; repEnd "1777"; repFamily "ERV1"; repLeft "-6480"; repStart "-150"; chr13 rmsk exon 62152283 62153620 21735 + . gene_id "HERV30_13q21.31"; transcript_id "HERV30_13q21.31"; locus "HERV30_13q21.31"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0022"; repClass "LTR"; repEnd "3368"; repFamily "ERV1"; repLeft "-4889"; repStart "2030"; chr13 rmsk exon 62153942 62156146 21735 + . gene_id "HERV30_13q21.31"; transcript_id "HERV30_13q21.31"; locus "HERV30_13q21.31"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0022"; repClass "LTR"; repEnd "5531"; repFamily "ERV1"; repLeft "-2726"; repStart "3369"; ### HERV9_13q21.31 ### chr13 rmsk gene 62156145 62158242 . + . gene_id "HERV9_13q21.31"; transcript_id "HERV9_13q21.31"; locus "HERV9_13q21.31"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0153"; model_cov "1623"; model_pct "19.2"; chr13 rmsk exon 62156145 62157767 12386 + . gene_id "HERV9_13q21.31"; transcript_id "HERV9_13q21.31"; locus "HERV9_13q21.31"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0153"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6813"; chr13 rmsk exon 62157768 62158242 3340 + . gene_id "HERV9_13q21.31"; transcript_id "HERV9_13q21.31"; locus "HERV9_13q21.31"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0153"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_13q21.31a ### chr13 rmsk gene 62251663 62254765 . + . gene_id "ERVLB4_13q21.31a"; transcript_id "ERVLB4_13q21.31a"; locus "ERVLB4_13q21.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1361"; model_cov "858"; model_pct "15.0"; chr13 rmsk exon 62251663 62251737 261 + . gene_id "ERVLB4_13q21.31a"; transcript_id "ERVLB4_13q21.31a"; locus "ERVLB4_13q21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1361"; repClass "LTR"; repEnd "1876"; repFamily "ERVL"; repLeft "-3838"; repStart "1802"; chr13 rmsk exon 62252186 62252414 486 + . gene_id "ERVLB4_13q21.31a"; transcript_id "ERVLB4_13q21.31a"; locus "ERVLB4_13q21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1361"; repClass "LTR"; repEnd "2065"; repFamily "ERVL"; repLeft "-3649"; repStart "1831"; chr13 rmsk exon 62253732 62254038 474 + . gene_id "ERVLB4_13q21.31a"; transcript_id "ERVLB4_13q21.31a"; locus "ERVLB4_13q21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1361"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "-3225"; repStart "2173"; chr13 rmsk exon 62254570 62254765 259 + . gene_id "ERVLB4_13q21.31a"; transcript_id "ERVLB4_13q21.31a"; locus "ERVLB4_13q21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1361"; repClass "LTR"; repEnd "3326"; repFamily "ERVL"; repLeft "-2388"; repStart "3092"; ### PRIMA41_13q21.31 ### chr13 rmsk gene 62398317 62402321 . + . gene_id "PRIMA41_13q21.31"; transcript_id "PRIMA41_13q21.31"; locus "PRIMA41_13q21.31"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0105"; model_cov "3500"; model_pct "45.1"; chr13 rmsk exon 62398317 62398833 3808 + . gene_id "PRIMA41_13q21.31"; transcript_id "PRIMA41_13q21.31"; locus "PRIMA41_13q21.31"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0105"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 62398920 62401879 19857 + . gene_id "PRIMA41_13q21.31"; transcript_id "PRIMA41_13q21.31"; locus "PRIMA41_13q21.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0105"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "3"; chr13 rmsk exon 62401875 62402124 1759 + . gene_id "PRIMA41_13q21.31"; transcript_id "PRIMA41_13q21.31"; locus "PRIMA41_13q21.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0105"; repClass "LTR"; repEnd "4634"; repFamily "ERV1"; repLeft "-3122"; repStart "4394"; chr13 rmsk exon 62402113 62402321 1500 + . gene_id "PRIMA41_13q21.31"; transcript_id "PRIMA41_13q21.31"; locus "PRIMA41_13q21.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0105"; repClass "LTR"; repEnd "5352"; repFamily "ERV1"; repLeft "-2404"; repStart "5144"; ### HERVL40_13q21.31b ### chr13 rmsk gene 62487746 62489147 . - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0337"; model_cov "853"; model_pct "15.4"; chr13 rmsk exon 62487746 62487848 352 - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0337"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "415"; repStart "0"; chr13 rmsk exon 62487931 62488229 1106 - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0337"; repClass "LTR"; repEnd "2869"; repFamily "ERVL"; repLeft "2569"; repStart "-2661"; chr13 rmsk exon 62488206 62488571 1366 - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0337"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "2052"; repStart "-3107"; chr13 rmsk exon 62488570 62488752 663 - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0337"; repClass "LTR"; repEnd "1620"; repFamily "ERVL"; repLeft "1438"; repStart "-3910"; chr13 rmsk exon 62488804 62489147 895 - . gene_id "HERVL40_13q21.31b"; transcript_id "HERVL40_13q21.31b"; locus "HERVL40_13q21.31b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0337"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "15"; repStart "-127"; ### HUERSP2_13q21.31 ### chr13 rmsk gene 62625244 62627940 . - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0103"; model_cov "1458"; model_pct "47.2"; chr13 rmsk exon 62625244 62625853 3709 - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0103"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 62625854 62626421 2810 - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0103"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2467"; repStart "0"; chr13 rmsk exon 62626421 62627129 3105 - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0103"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "673"; repStart "-1707"; chr13 rmsk exon 62627147 62627285 471 - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0103"; repClass "LTR"; repEnd "131"; repFamily "ERV1"; repLeft "2"; repStart "-2957"; chr13 rmsk exon 62627287 62627940 3932 - . gene_id "HUERSP2_13q21.31"; transcript_id "HUERSP2_13q21.31"; locus "HUERSP2_13q21.31"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0103"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_13q21.31b ### chr13 rmsk gene 62643537 62648004 . + . gene_id "ERVLB4_13q21.31b"; transcript_id "ERVLB4_13q21.31b"; locus "ERVLB4_13q21.31b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1362"; model_cov "4093"; model_pct "71.6"; chr13 rmsk exon 62643537 62643709 1161 + . gene_id "ERVLB4_13q21.31b"; transcript_id "ERVLB4_13q21.31b"; locus "ERVLB4_13q21.31b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1362"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-48"; repStart "232"; chr13 rmsk exon 62643737 62646986 17977 + . gene_id "ERVLB4_13q21.31b"; transcript_id "ERVLB4_13q21.31b"; locus "ERVLB4_13q21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1362"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "-1507"; repStart "829"; chr13 rmsk exon 62646984 62647648 3291 + . gene_id "ERVLB4_13q21.31b"; transcript_id "ERVLB4_13q21.31b"; locus "ERVLB4_13q21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1362"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4999"; chr13 rmsk exon 62647649 62648004 1128 + . gene_id "ERVLB4_13q21.31b"; transcript_id "ERVLB4_13q21.31b"; locus "ERVLB4_13q21.31b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1362"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-129"; repStart "1"; ### HUERSP1_13q21.31 ### chr13 rmsk gene 62788191 62792234 . - . gene_id "HUERSP1_13q21.31"; transcript_id "HUERSP1_13q21.31"; locus "HUERSP1_13q21.31"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0159"; model_cov "3266"; model_pct "52.1"; chr13 rmsk exon 62788191 62791530 17281 - . gene_id "HUERSP1_13q21.31"; transcript_id "HUERSP1_13q21.31"; locus "HUERSP1_13q21.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0159"; repClass "LTR"; repEnd "3267"; repFamily "ERV1"; repLeft "1"; repStart "-2996"; chr13 rmsk exon 62791531 62792234 2323 - . gene_id "HUERSP1_13q21.31"; transcript_id "HUERSP1_13q21.31"; locus "HUERSP1_13q21.31"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0159"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_13q21.31b ### chr13 rmsk gene 62861608 62863883 . + . gene_id "ERVLE_13q21.31b"; transcript_id "ERVLE_13q21.31b"; locus "ERVLE_13q21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2859"; model_cov "2029"; model_pct "35.8"; chr13 rmsk exon 62861608 62862723 1803 + . gene_id "ERVLE_13q21.31b"; transcript_id "ERVLE_13q21.31b"; locus "ERVLE_13q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2859"; repClass "LTR"; repEnd "4003"; repFamily "ERVL"; repLeft "-1664"; repStart "2726"; chr13 rmsk exon 62862835 62863331 1555 + . gene_id "ERVLE_13q21.31b"; transcript_id "ERVLE_13q21.31b"; locus "ERVLE_13q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2859"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-1023"; repStart "4162"; chr13 rmsk exon 62863622 62863883 1555 + . gene_id "ERVLE_13q21.31b"; transcript_id "ERVLE_13q21.31b"; locus "ERVLE_13q21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2859"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "-752"; repStart "4645"; ### ERVLE_13q21.31c ### chr13 rmsk gene 62875313 62878878 . + . gene_id "ERVLE_13q21.31c"; transcript_id "ERVLE_13q21.31c"; locus "ERVLE_13q21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2860"; model_cov "1293"; model_pct "22.8"; chr13 rmsk exon 62875313 62876188 1970 + . gene_id "ERVLE_13q21.31c"; transcript_id "ERVLE_13q21.31c"; locus "ERVLE_13q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2860"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "-4783"; repStart "4"; chr13 rmsk exon 62878466 62878878 1970 + . gene_id "ERVLE_13q21.31c"; transcript_id "ERVLE_13q21.31c"; locus "ERVLE_13q21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2860"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "-4369"; repStart "885"; ### ERV316A3_13q21.31a ### chr13 rmsk gene 62984461 62985933 . - . gene_id "ERV316A3_13q21.31a"; transcript_id "ERV316A3_13q21.31a"; locus "ERV316A3_13q21.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2196"; model_cov "1436"; model_pct "27.5"; chr13 rmsk exon 62984461 62984649 288 - . gene_id "ERV316A3_13q21.31a"; transcript_id "ERV316A3_13q21.31a"; locus "ERV316A3_13q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2196"; repClass "LTR"; repEnd "4626"; repFamily "ERVL"; repLeft "4432"; repStart "-600"; chr13 rmsk exon 62984788 62985300 525 - . gene_id "ERV316A3_13q21.31a"; transcript_id "ERV316A3_13q21.31a"; locus "ERV316A3_13q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2196"; repClass "LTR"; repEnd "4524"; repFamily "ERVL"; repLeft "4055"; repStart "-702"; chr13 rmsk exon 62985303 62985933 927 - . gene_id "ERV316A3_13q21.31a"; transcript_id "ERV316A3_13q21.31a"; locus "ERV316A3_13q21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2196"; repClass "LTR"; repEnd "3678"; repFamily "ERVL"; repLeft "2905"; repStart "-1548"; ### ERV316A3_13q21.31b ### chr13 rmsk gene 63075231 63077914 . - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2197"; model_cov "1762"; model_pct "33.7"; chr13 rmsk exon 63075231 63075438 543 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "3747"; repFamily "ERVL"; repLeft "3344"; repStart "-1479"; chr13 rmsk exon 63075541 63075686 450 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "3664"; repFamily "ERVL"; repLeft "3518"; repStart "-1562"; chr13 rmsk exon 63075964 63076420 953 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "2785"; repFamily "ERVL"; repLeft "2409"; repStart "-2441"; chr13 rmsk exon 63076554 63076824 655 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "2130"; repFamily "ERVL"; repLeft "1854"; repStart "-3096"; chr13 rmsk exon 63076848 63076998 328 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "1526"; repFamily "ERVL"; repLeft "1378"; repStart "-3700"; chr13 rmsk exon 63077530 63077914 639 - . gene_id "ERV316A3_13q21.31b"; transcript_id "ERV316A3_13q21.31b"; locus "ERV316A3_13q21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2197"; repClass "LTR"; repEnd "1371"; repFamily "ERVL"; repLeft "958"; repStart "-3855"; ### HERVL40_13q21.31c ### chr13 rmsk gene 63167639 63168370 . - . gene_id "HERVL40_13q21.31c"; transcript_id "HERVL40_13q21.31c"; locus "HERVL40_13q21.31c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0338"; model_cov "757"; model_pct "13.7"; chr13 rmsk exon 63167639 63168370 1568 - . gene_id "HERVL40_13q21.31c"; transcript_id "HERVL40_13q21.31c"; locus "HERVL40_13q21.31c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0338"; repClass "LTR"; repEnd "3195"; repFamily "ERVL"; repLeft "2438"; repStart "-2335"; ### HERVH_13q21.31 ### chr13 rmsk gene 63213193 63219132 . + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0991"; model_cov "4820"; model_pct "62.5"; chr13 rmsk exon 63213193 63213548 2044 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 63213551 63216515 19083 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr13 rmsk exon 63216510 63216653 791 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 63216644 63217146 3494 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr13 rmsk exon 63217149 63217653 4085 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "4989"; repFamily "ERV1"; repLeft "-2724"; repStart "4488"; chr13 rmsk exon 63217959 63218119 4085 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4990"; chr13 rmsk exon 63218124 63218340 1375 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 63218339 63218631 1847 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "7629"; repFamily "ERV1"; repLeft "-84"; repStart "7322"; chr13 rmsk exon 63218718 63219132 2564 + . gene_id "HERVH_13q21.31"; transcript_id "HERVH_13q21.31"; locus "HERVH_13q21.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0991"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_13q21.31a ### chr13 rmsk gene 63352595 63353670 . - . gene_id "MER61_13q21.31a"; transcript_id "MER61_13q21.31a"; locus "MER61_13q21.31a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0301"; model_cov "714"; model_pct "13.7"; chr13 rmsk exon 63352595 63352642 4434 - . gene_id "MER61_13q21.31a"; transcript_id "MER61_13q21.31a"; locus "MER61_13q21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0301"; repClass "LTR"; repEnd "3079"; repFamily "ERV1"; repLeft "3039"; repStart "-2138"; chr13 rmsk exon 63353004 63353670 4434 - . gene_id "MER61_13q21.31a"; transcript_id "MER61_13q21.31a"; locus "MER61_13q21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0301"; repClass "LTR"; repEnd "3038"; repFamily "ERV1"; repLeft "2364"; repStart "-2179"; ### HERVL_13q21.31a ### chr13 rmsk gene 63441583 63445165 . + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1031"; model_cov "2755"; model_pct "48.7"; chr13 rmsk exon 63441583 63441968 2840 + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1031"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr13 rmsk exon 63442016 63442057 2840 + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1031"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "402"; chr13 rmsk exon 63442058 63444018 14469 + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1031"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "-3665"; repStart "1"; chr13 rmsk exon 63444006 63444767 5725 + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1031"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4887"; chr13 rmsk exon 63444768 63445165 2677 + . gene_id "HERVL_13q21.31a"; transcript_id "HERVL_13q21.31a"; locus "HERVL_13q21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1031"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### HERVL_13q21.31b ### chr13 rmsk gene 63484124 63487603 . + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1032"; model_cov "2590"; model_pct "45.8"; chr13 rmsk exon 63484124 63484499 2881 + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1032"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr13 rmsk exon 63484525 63484562 2881 + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1032"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "386"; chr13 rmsk exon 63484578 63487149 19565 + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1032"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3064"; chr13 rmsk exon 63487150 63487535 2815 + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1032"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chr13 rmsk exon 63487566 63487603 2815 + . gene_id "HERVL_13q21.31b"; transcript_id "HERVL_13q21.31b"; locus "HERVL_13q21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1032"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-3"; repStart "404"; ### HERVE_13q21.31a ### chr13 rmsk gene 63839081 63840345 . + . gene_id "HERVE_13q21.31a"; transcript_id "HERVE_13q21.31a"; locus "HERVE_13q21.31a"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0143"; model_cov "1189"; model_pct "15.2"; chr13 rmsk exon 63839081 63839676 3899 + . gene_id "HERVE_13q21.31a"; transcript_id "HERVE_13q21.31a"; locus "HERVE_13q21.31a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0143"; repClass "LTR"; repEnd "3843"; repFamily "ERV1"; repLeft "-3970"; repStart "3251"; chr13 rmsk exon 63839746 63840345 3974 + . gene_id "HERVE_13q21.31a"; transcript_id "HERVE_13q21.31a"; locus "HERVE_13q21.31a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0143"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "-3967"; repStart "3249"; ### HERVE_13q21.31b ### chr13 rmsk gene 63842579 63843845 . + . gene_id "HERVE_13q21.31b"; transcript_id "HERVE_13q21.31b"; locus "HERVE_13q21.31b"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0145"; model_cov "1191"; model_pct "15.2"; chr13 rmsk exon 63842579 63843175 3843 + . gene_id "HERVE_13q21.31b"; transcript_id "HERVE_13q21.31b"; locus "HERVE_13q21.31b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0145"; repClass "LTR"; repEnd "3843"; repFamily "ERV1"; repLeft "-3970"; repStart "3249"; chr13 rmsk exon 63843245 63843845 3992 + . gene_id "HERVE_13q21.31b"; transcript_id "HERVE_13q21.31b"; locus "HERVE_13q21.31b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0145"; repClass "LTR"; repEnd "3846"; repFamily "ERV1"; repLeft "-3967"; repStart "3249"; ### MER101_13q21.31 ### chr13 rmsk gene 63922663 63924468 . - . gene_id "MER101_13q21.31"; transcript_id "MER101_13q21.31"; locus "MER101_13q21.31"; category "internal"; intModel "MER101-int"; locid "MER101-int_0297"; model_cov "2734"; model_pct "41.2"; chr13 rmsk exon 63922663 63924197 1807 - . gene_id "MER101_13q21.31"; transcript_id "MER101_13q21.31"; locus "MER101_13q21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0297"; repClass "LTR"; repEnd "5624"; repFamily "ERV1"; repLeft "3076"; repStart "-1015"; chr13 rmsk exon 63924294 63924468 720 - . gene_id "MER101_13q21.31"; transcript_id "MER101_13q21.31"; locus "MER101_13q21.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0297"; repClass "LTR"; repEnd "3419"; repFamily "ERV1"; repLeft "3233"; repStart "-3220"; ### ERVLB4_13q21.31c ### chr13 rmsk gene 64008213 64009185 . + . gene_id "ERVLB4_13q21.31c"; transcript_id "ERVLB4_13q21.31c"; locus "ERVLB4_13q21.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1365"; model_cov "1105"; model_pct "19.3"; chr13 rmsk exon 64008213 64008669 394 + . gene_id "ERVLB4_13q21.31c"; transcript_id "ERVLB4_13q21.31c"; locus "ERVLB4_13q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1365"; repClass "LTR"; repEnd "2650"; repFamily "ERVL"; repLeft "-3064"; repStart "2127"; chr13 rmsk exon 64008754 64009185 491 + . gene_id "ERVLB4_13q21.31c"; transcript_id "ERVLB4_13q21.31c"; locus "ERVLB4_13q21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1365"; repClass "LTR"; repEnd "3253"; repFamily "ERVL"; repLeft "-2461"; repStart "2671"; ### MER61_13q21.31b ### chr13 rmsk gene 64052271 64055026 . - . gene_id "MER61_13q21.31b"; transcript_id "MER61_13q21.31b"; locus "MER61_13q21.31b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0302"; model_cov "2464"; model_pct "47.2"; chr13 rmsk exon 64052271 64052599 1772 - . gene_id "MER61_13q21.31b"; transcript_id "MER61_13q21.31b"; locus "MER61_13q21.31b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0302"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr13 rmsk exon 64052601 64055026 16348 - . gene_id "MER61_13q21.31b"; transcript_id "MER61_13q21.31b"; locus "MER61_13q21.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0302"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2753"; repStart "0"; ### ERVLE_13q21.31d ### chr13 rmsk gene 64224311 64228683 . + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2862"; model_cov "2595"; model_pct "45.8"; chr13 rmsk exon 64224311 64224401 265 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "2401"; repFamily "ERVL"; repLeft "-3266"; repStart "2261"; chr13 rmsk exon 64224586 64224875 885 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "3325"; repFamily "ERVL"; repLeft "-2342"; repStart "3021"; chr13 rmsk exon 64225121 64225581 786 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "3784"; repFamily "ERVL"; repLeft "-1883"; repStart "3307"; chr13 rmsk exon 64225580 64225681 1826 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "4018"; repFamily "ERVL"; repLeft "-1649"; repStart "3927"; chr13 rmsk exon 64226006 64226561 2128 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "-1046"; repStart "4019"; chr13 rmsk exon 64227544 64227826 2128 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "4886"; repFamily "ERVL"; repLeft "-781"; repStart "4605"; chr13 rmsk exon 64227989 64228683 2128 + . gene_id "ERVLE_13q21.31d"; transcript_id "ERVLE_13q21.31d"; locus "ERVLE_13q21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2862"; repClass "LTR"; repEnd "5587"; repFamily "ERVL"; repLeft "-80"; repStart "4887"; ### HERVL_13q21.31c ### chr13 rmsk gene 64362415 64369318 . + . gene_id "HERVL_13q21.31c"; transcript_id "HERVL_13q21.31c"; locus "HERVL_13q21.31c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1033"; model_cov "5666"; model_pct "100.0"; chr13 rmsk exon 64362415 64362863 2976 + . gene_id "HERVL_13q21.31c"; transcript_id "HERVL_13q21.31c"; locus "HERVL_13q21.31c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1033"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr13 rmsk exon 64362864 64367488 34504 + . gene_id "HERVL_13q21.31c"; transcript_id "HERVL_13q21.31c"; locus "HERVL_13q21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1033"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "-1045"; repStart "1"; chr13 rmsk exon 64367799 64368873 7360 + . gene_id "HERVL_13q21.31c"; transcript_id "HERVL_13q21.31c"; locus "HERVL_13q21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1033"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4596"; chr13 rmsk exon 64368874 64369318 3096 + . gene_id "HERVL_13q21.31c"; transcript_id "HERVL_13q21.31c"; locus "HERVL_13q21.31c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1033"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_13q21.31e ### chr13 rmsk gene 64655650 64656375 . + . gene_id "ERVLE_13q21.31e"; transcript_id "ERVLE_13q21.31e"; locus "ERVLE_13q21.31e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2864"; model_cov "734"; model_pct "13.0"; chr13 rmsk exon 64655650 64656375 1021 + . gene_id "ERVLE_13q21.31e"; transcript_id "ERVLE_13q21.31e"; locus "ERVLE_13q21.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2864"; repClass "LTR"; repEnd "3935"; repFamily "ERVL"; repLeft "-1732"; repStart "3201"; ### HERVL40_13q21.31d ### chr13 rmsk gene 64676485 64678648 . + . gene_id "HERVL40_13q21.31d"; transcript_id "HERVL40_13q21.31d"; locus "HERVL40_13q21.31d"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0340"; model_cov "1151"; model_pct "20.8"; chr13 rmsk exon 64676485 64676783 539 + . gene_id "HERVL40_13q21.31d"; transcript_id "HERVL40_13q21.31d"; locus "HERVL40_13q21.31d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0340"; repClass "LTR"; repEnd "878"; repFamily "ERVL"; repLeft "-4652"; repStart "580"; chr13 rmsk exon 64677517 64677883 501 + . gene_id "HERVL40_13q21.31d"; transcript_id "HERVL40_13q21.31d"; locus "HERVL40_13q21.31d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0340"; repClass "LTR"; repEnd "1331"; repFamily "ERVL"; repLeft "-4199"; repStart "958"; chr13 rmsk exon 64678160 64678648 1523 + . gene_id "HERVL40_13q21.31d"; transcript_id "HERVL40_13q21.31d"; locus "HERVL40_13q21.31d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0340"; repClass "LTR"; repEnd "3031"; repFamily "ERVL"; repLeft "-2499"; repStart "2551"; ### HERVL40_13q21.31e ### chr13 rmsk gene 64687084 64689749 . + . gene_id "HERVL40_13q21.31e"; transcript_id "HERVL40_13q21.31e"; locus "HERVL40_13q21.31e"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0341"; model_cov "893"; model_pct "16.1"; chr13 rmsk exon 64687084 64687789 1622 + . gene_id "HERVL40_13q21.31e"; transcript_id "HERVL40_13q21.31e"; locus "HERVL40_13q21.31e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0341"; repClass "LTR"; repEnd "4662"; repFamily "ERVL"; repLeft "-868"; repStart "3974"; chr13 rmsk exon 64689060 64689262 834 + . gene_id "HERVL40_13q21.31e"; transcript_id "HERVL40_13q21.31e"; locus "HERVL40_13q21.31e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0341"; repClass "LTR"; repEnd "5521"; repFamily "ERVL"; repLeft "-9"; repStart "5316"; chr13 rmsk exon 64689269 64689749 1021 + . gene_id "HERVL40_13q21.31e"; transcript_id "HERVL40_13q21.31e"; locus "HERVL40_13q21.31e"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0341"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "15"; ### HML1_13q21.31a ### chr13 rmsk gene 64704339 64705641 . - . gene_id "HML1_13q21.31a"; transcript_id "HML1_13q21.31a"; locus "HML1_13q21.31a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0093"; model_cov "870"; model_pct "14.3"; chr13 rmsk exon 64704339 64704731 1930 - . gene_id "HML1_13q21.31a"; transcript_id "HML1_13q21.31a"; locus "HML1_13q21.31a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0093"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr13 rmsk exon 64704738 64704852 834 - . gene_id "HML1_13q21.31a"; transcript_id "HML1_13q21.31a"; locus "HML1_13q21.31a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0093"; repClass "LTR"; repEnd "6094"; repFamily "ERVK"; repLeft "5975"; repStart "-2"; chr13 rmsk exon 64704930 64705107 1427 - . gene_id "HML1_13q21.31a"; transcript_id "HML1_13q21.31a"; locus "HML1_13q21.31a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0093"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5716"; repStart "-199"; chr13 rmsk exon 64705103 64705641 2885 - . gene_id "HML1_13q21.31a"; transcript_id "HML1_13q21.31a"; locus "HML1_13q21.31a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0093"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "5036"; repStart "-490"; ### HERVW_13q21.31 ### chr13 rmsk gene 64705642 64708293 . - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0242"; model_cov "2697"; model_pct "31.3"; chr13 rmsk exon 64705642 64705689 323 - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0242"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "434"; repStart "-8145"; chr13 rmsk exon 64705691 64705838 1222 - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0242"; repClass "LTR"; repEnd "5552"; repFamily "ERV1"; repLeft "5405"; repStart "-3074"; chr13 rmsk exon 64705818 64707109 9229 - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0242"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "2430"; repStart "-4872"; chr13 rmsk exon 64707093 64707915 8685 - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0242"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1192"; repStart "-6610"; chr13 rmsk exon 64707949 64708293 8685 - . gene_id "HERVW_13q21.31"; transcript_id "HERVW_13q21.31"; locus "HERVW_13q21.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0242"; repClass "LTR"; repEnd "1191"; repFamily "ERV1"; repLeft "836"; repStart "-7435"; ### HML1_13q21.31b ### chr13 rmsk gene 64708337 64709472 . - . gene_id "HML1_13q21.31b"; transcript_id "HML1_13q21.31b"; locus "HML1_13q21.31b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0094"; model_cov "783"; model_pct "12.8"; chr13 rmsk exon 64708337 64709067 4819 - . gene_id "HML1_13q21.31b"; transcript_id "HML1_13q21.31b"; locus "HML1_13q21.31b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0094"; repClass "LTR"; repEnd "784"; repFamily "ERVK"; repLeft "1"; repStart "-5312"; chr13 rmsk exon 64709068 64709437 2034 - . gene_id "HML1_13q21.31b"; transcript_id "HML1_13q21.31b"; locus "HML1_13q21.31b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0094"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr13 rmsk exon 64709426 64709472 271 - . gene_id "HML1_13q21.31b"; transcript_id "HML1_13q21.31b"; locus "HML1_13q21.31b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0094"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; ### ERV316A3_13q21.31c ### chr13 rmsk gene 64761281 64766277 . - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2199"; model_cov "2872"; model_pct "55.0"; chr13 rmsk exon 64761281 64761551 378 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "4"; repStart "-88"; chr13 rmsk exon 64761730 64761930 303 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "4811"; repStart "-203"; chr13 rmsk exon 64762241 64762344 303 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "4707"; repStart "-416"; chr13 rmsk exon 64763106 64763711 1071 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "4687"; repFamily "ERVL"; repLeft "4073"; repStart "-539"; chr13 rmsk exon 64763800 64764167 1907 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "2388"; repFamily "ERVL"; repLeft "2030"; repStart "-2838"; chr13 rmsk exon 64764652 64765895 1907 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "2029"; repFamily "ERVL"; repLeft "772"; repStart "-3197"; chr13 rmsk exon 64765964 64766277 326 - . gene_id "ERV316A3_13q21.31c"; transcript_id "ERV316A3_13q21.31c"; locus "ERV316A3_13q21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2199"; repClass "LTR"; repEnd "689"; repFamily "ERVL"; repLeft "361"; repStart "-4537"; ### ERVLB4_13q21.31d ### chr13 rmsk gene 64927117 64929960 . + . gene_id "ERVLB4_13q21.31d"; transcript_id "ERVLB4_13q21.31d"; locus "ERVLB4_13q21.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1366"; model_cov "2015"; model_pct "35.3"; chr13 rmsk exon 64927117 64927748 3936 + . gene_id "ERVLB4_13q21.31d"; transcript_id "ERVLB4_13q21.31d"; locus "ERVLB4_13q21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1366"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2435"; chr13 rmsk exon 64927739 64927763 6626 + . gene_id "ERVLB4_13q21.31d"; transcript_id "ERVLB4_13q21.31d"; locus "ERVLB4_13q21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1366"; repClass "LTR"; repEnd "4244"; repFamily "ERVL"; repLeft "-1470"; repStart "4221"; chr13 rmsk exon 64928060 64928474 6626 + . gene_id "ERVLB4_13q21.31d"; transcript_id "ERVLB4_13q21.31d"; locus "ERVLB4_13q21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1366"; repClass "LTR"; repEnd "4643"; repFamily "ERVL"; repLeft "-1071"; repStart "4245"; chr13 rmsk exon 64928998 64929960 6626 + . gene_id "ERVLB4_13q21.31d"; transcript_id "ERVLB4_13q21.31d"; locus "ERVLB4_13q21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1366"; repClass "LTR"; repEnd "5593"; repFamily "ERVL"; repLeft "-121"; repStart "4644"; ### ERV316A3_13q21.31d ### chr13 rmsk gene 65197835 65199550 . - . gene_id "ERV316A3_13q21.31d"; transcript_id "ERV316A3_13q21.31d"; locus "ERV316A3_13q21.31d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2200"; model_cov "989"; model_pct "18.9"; chr13 rmsk exon 65197835 65198279 1158 - . gene_id "ERV316A3_13q21.31d"; transcript_id "ERV316A3_13q21.31d"; locus "ERV316A3_13q21.31d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2200"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "9"; repStart "0"; chr13 rmsk exon 65198339 65198614 881 - . gene_id "ERV316A3_13q21.31d"; transcript_id "ERV316A3_13q21.31d"; locus "ERV316A3_13q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2200"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "4899"; repStart "-46"; chr13 rmsk exon 65198667 65199315 1302 - . gene_id "ERV316A3_13q21.31d"; transcript_id "ERV316A3_13q21.31d"; locus "ERV316A3_13q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2200"; repClass "LTR"; repEnd "4894"; repFamily "ERVL"; repLeft "4257"; repStart "-332"; chr13 rmsk exon 65199479 65199550 284 - . gene_id "ERV316A3_13q21.31d"; transcript_id "ERV316A3_13q21.31d"; locus "ERV316A3_13q21.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2200"; repClass "LTR"; repEnd "2091"; repFamily "ERVL"; repLeft "2020"; repStart "-3135"; ### ERV316A3_13q21.32a ### chr13 rmsk gene 65200039 65204269 . - . gene_id "ERV316A3_13q21.32a"; transcript_id "ERV316A3_13q21.32a"; locus "ERV316A3_13q21.32a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2201"; model_cov "1502"; model_pct "28.7"; chr13 rmsk exon 65200039 65200338 989 - . gene_id "ERV316A3_13q21.32a"; transcript_id "ERV316A3_13q21.32a"; locus "ERV316A3_13q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2201"; repClass "LTR"; repEnd "4254"; repFamily "ERVL"; repLeft "3959"; repStart "-972"; chr13 rmsk exon 65200965 65201198 700 - . gene_id "ERV316A3_13q21.32a"; transcript_id "ERV316A3_13q21.32a"; locus "ERV316A3_13q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2201"; repClass "LTR"; repEnd "3931"; repFamily "ERVL"; repLeft "3666"; repStart "-1295"; chr13 rmsk exon 65201228 65201673 547 - . gene_id "ERV316A3_13q21.32a"; transcript_id "ERV316A3_13q21.32a"; locus "ERV316A3_13q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2201"; repClass "LTR"; repEnd "3262"; repFamily "ERVL"; repLeft "2738"; repStart "-1964"; chr13 rmsk exon 65203864 65204269 903 - . gene_id "ERV316A3_13q21.32a"; transcript_id "ERV316A3_13q21.32a"; locus "ERV316A3_13q21.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2201"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "2048"; repStart "-2760"; ### ERV316A3_13q21.32b ### chr13 rmsk gene 65604537 65605053 . - . gene_id "ERV316A3_13q21.32b"; transcript_id "ERV316A3_13q21.32b"; locus "ERV316A3_13q21.32b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2202"; model_cov "557"; model_pct "10.7"; chr13 rmsk exon 65604537 65605053 600 - . gene_id "ERV316A3_13q21.32b"; transcript_id "ERV316A3_13q21.32b"; locus "ERV316A3_13q21.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2202"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "1665"; repStart "-3004"; ### ERVLE_13q21.32a ### chr13 rmsk gene 65633689 65635317 . + . gene_id "ERVLE_13q21.32a"; transcript_id "ERVLE_13q21.32a"; locus "ERVLE_13q21.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2867"; model_cov "797"; model_pct "14.1"; chr13 rmsk exon 65633689 65634078 842 + . gene_id "ERVLE_13q21.32a"; transcript_id "ERVLE_13q21.32a"; locus "ERVLE_13q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2867"; repClass "LTR"; repEnd "664"; repFamily "ERVL"; repLeft "-5003"; repStart "278"; chr13 rmsk exon 65634558 65634657 376 + . gene_id "ERVLE_13q21.32a"; transcript_id "ERVLE_13q21.32a"; locus "ERVLE_13q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2867"; repClass "LTR"; repEnd "2610"; repFamily "ERVL"; repLeft "-3057"; repStart "2499"; chr13 rmsk exon 65634992 65635112 353 + . gene_id "ERVLE_13q21.32a"; transcript_id "ERVLE_13q21.32a"; locus "ERVLE_13q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2867"; repClass "LTR"; repEnd "2867"; repFamily "ERVL"; repLeft "-2800"; repStart "2745"; chr13 rmsk exon 65635140 65635317 607 + . gene_id "ERVLE_13q21.32a"; transcript_id "ERVLE_13q21.32a"; locus "ERVLE_13q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2867"; repClass "LTR"; repEnd "3132"; repFamily "ERVL"; repLeft "-2535"; repStart "2954"; ### HERVL40_13q21.32 ### chr13 rmsk gene 65636053 65640768 . + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0342"; model_cov "3108"; model_pct "56.2"; chr13 rmsk exon 65636053 65636269 810 + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0342"; repClass "LTR"; repEnd "1346"; repFamily "ERVL"; repLeft "-4184"; repStart "1132"; chr13 rmsk exon 65636879 65637140 810 + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0342"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1347"; chr13 rmsk exon 65637140 65639509 6043 + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0342"; repClass "LTR"; repEnd "4496"; repFamily "ERVL"; repLeft "-1034"; repStart "2050"; chr13 rmsk exon 65640150 65640323 764 + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0342"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5352"; chr13 rmsk exon 65640327 65640768 1209 + . gene_id "HERVL40_13q21.32"; transcript_id "HERVL40_13q21.32"; locus "HERVL40_13q21.32"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0342"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "4"; ### ERVL_13q21.32a ### chr13 rmsk gene 65647800 65648336 . + . gene_id "ERVL_13q21.32a"; transcript_id "ERVL_13q21.32a"; locus "ERVL_13q21.32a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0346"; model_cov "611"; model_pct "10.6"; chr13 rmsk exon 65647800 65648336 414 + . gene_id "ERVL_13q21.32a"; transcript_id "ERVL_13q21.32a"; locus "ERVL_13q21.32a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0346"; repClass "LTR"; repEnd "5379"; repFamily "ERVL"; repLeft "-378"; repStart "4768"; ### ERVL_13q21.32b ### chr13 rmsk gene 65741106 65741717 . - . gene_id "ERVL_13q21.32b"; transcript_id "ERVL_13q21.32b"; locus "ERVL_13q21.32b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0347"; model_cov "644"; model_pct "11.2"; chr13 rmsk exon 65741106 65741717 2936 - . gene_id "ERVL_13q21.32b"; transcript_id "ERVL_13q21.32b"; locus "ERVL_13q21.32b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0347"; repClass "LTR"; repEnd "4692"; repFamily "ERVL"; repLeft "4048"; repStart "-1065"; ### ERV316A3_13q21.32c ### chr13 rmsk gene 65863193 65866807 . + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2203"; model_cov "1801"; model_pct "34.5"; chr13 rmsk exon 65863193 65863723 635 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "3102"; repFamily "ERVL"; repLeft "-2124"; repStart "2580"; chr13 rmsk exon 65864369 65864484 831 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "3769"; repFamily "ERVL"; repLeft "-1457"; repStart "3651"; chr13 rmsk exon 65864784 65864857 831 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "3837"; repFamily "ERVL"; repLeft "-1389"; repStart "3770"; chr13 rmsk exon 65865162 65865989 831 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-568"; repStart "3838"; chr13 rmsk exon 65865995 65866261 442 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "5062"; repFamily "ERVL"; repLeft "-164"; repStart "4788"; chr13 rmsk exon 65866597 65866807 643 + . gene_id "ERV316A3_13q21.32c"; transcript_id "ERV316A3_13q21.32c"; locus "ERV316A3_13q21.32c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2203"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "-1"; repStart "306"; ### ERVLB4_13q21.32a ### chr13 rmsk gene 66004537 66005798 . + . gene_id "ERVLB4_13q21.32a"; transcript_id "ERVLB4_13q21.32a"; locus "ERVLB4_13q21.32a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1367"; model_cov "652"; model_pct "11.4"; chr13 rmsk exon 66004537 66004635 299 + . gene_id "ERVLB4_13q21.32a"; transcript_id "ERVLB4_13q21.32a"; locus "ERVLB4_13q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1367"; repClass "LTR"; repEnd "3698"; repFamily "ERVL"; repLeft "-2016"; repStart "3598"; chr13 rmsk exon 66005036 66005131 310 + . gene_id "ERVLB4_13q21.32a"; transcript_id "ERVLB4_13q21.32a"; locus "ERVLB4_13q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1367"; repClass "LTR"; repEnd "4172"; repFamily "ERVL"; repLeft "-1542"; repStart "4072"; chr13 rmsk exon 66005387 66005798 489 + . gene_id "ERVLB4_13q21.32a"; transcript_id "ERVLB4_13q21.32a"; locus "ERVLB4_13q21.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1367"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-1298"; repStart "3964"; ### ERVLE_13q21.32b ### chr13 rmsk gene 66007965 66011314 . + . gene_id "ERVLE_13q21.32b"; transcript_id "ERVLE_13q21.32b"; locus "ERVLE_13q21.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2868"; model_cov "1642"; model_pct "29.0"; chr13 rmsk exon 66007965 66009201 968 + . gene_id "ERVLE_13q21.32b"; transcript_id "ERVLE_13q21.32b"; locus "ERVLE_13q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2868"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3019"; repStart "1266"; chr13 rmsk exon 66010881 66010911 887 + . gene_id "ERVLE_13q21.32b"; transcript_id "ERVLE_13q21.32b"; locus "ERVLE_13q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2868"; repClass "LTR"; repEnd "2676"; repFamily "ERVL"; repLeft "-2991"; repStart "2649"; chr13 rmsk exon 66011082 66011314 292 + . gene_id "ERVLE_13q21.32b"; transcript_id "ERVLE_13q21.32b"; locus "ERVLE_13q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2868"; repClass "LTR"; repEnd "3447"; repFamily "ERVL"; repLeft "-2220"; repStart "3214"; ### ERVLB4_13q21.32b ### chr13 rmsk gene 66076395 66080242 . + . gene_id "ERVLB4_13q21.32b"; transcript_id "ERVLB4_13q21.32b"; locus "ERVLB4_13q21.32b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1370"; model_cov "3524"; model_pct "61.7"; chr13 rmsk exon 66076395 66076653 713 + . gene_id "ERVLB4_13q21.32b"; transcript_id "ERVLB4_13q21.32b"; locus "ERVLB4_13q21.32b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1370"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-56"; repStart "170"; chr13 rmsk exon 66076763 66079447 12126 + . gene_id "ERVLB4_13q21.32b"; transcript_id "ERVLB4_13q21.32b"; locus "ERVLB4_13q21.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1370"; repClass "LTR"; repEnd "3506"; repFamily "ERVL"; repLeft "-2208"; repStart "766"; chr13 rmsk exon 66079456 66080242 4407 + . gene_id "ERVLB4_13q21.32b"; transcript_id "ERVLB4_13q21.32b"; locus "ERVLB4_13q21.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1370"; repClass "LTR"; repEnd "4517"; repFamily "ERVL"; repLeft "-1197"; repStart "3733"; ### HERVH_13q21.32a ### chr13 rmsk gene 66141332 66147036 . - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0992"; model_cov "4911"; model_pct "63.7"; chr13 rmsk exon 66141332 66141763 2682 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 66141764 66142143 2627 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 66142142 66142363 1344 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr13 rmsk exon 66142361 66143021 4344 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 66143024 66143518 3354 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr13 rmsk exon 66143518 66143667 912 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 66143647 66146604 20115 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 66146607 66147036 2617 - . gene_id "HERVH_13q21.32a"; transcript_id "HERVH_13q21.32a"; locus "HERVH_13q21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0992"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_13q21.32 ### chr13 rmsk gene 66177985 66184810 . - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1034"; model_cov "5636"; model_pct "99.7"; chr13 rmsk exon 66177985 66178523 1993 - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1034"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-100"; repStart "-7"; chr13 rmsk exon 66178524 66183032 32575 - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1034"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1070"; repStart "0"; chr13 rmsk exon 66183144 66184116 32057 - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1034"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "76"; repStart "-4585"; chr13 rmsk exon 66184215 66184274 346 - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1034"; repClass "LTR"; repEnd "60"; repFamily "ERVL"; repLeft "1"; repStart "-5594"; chr13 rmsk exon 66184275 66184810 1996 - . gene_id "HERVL_13q21.32"; transcript_id "HERVL_13q21.32"; locus "HERVL_13q21.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1034"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-90"; repStart "0"; ### HERVH_13q21.32b ### chr13 rmsk gene 66226369 66232340 . - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0993"; model_cov "5051"; model_pct "65.5"; chr13 rmsk exon 66226369 66226819 3399 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 66226820 66227192 2418 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr13 rmsk exon 66227193 66227414 1326 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 66227416 66228074 3999 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 66228077 66228571 3225 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr13 rmsk exon 66228571 66231887 18019 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr13 rmsk exon 66231890 66232340 3405 - . gene_id "HERVH_13q21.32b"; transcript_id "HERVH_13q21.32b"; locus "HERVH_13q21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0993"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_13q21.32 ### chr13 rmsk gene 66612629 66618271 . + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0303"; model_cov "4599"; model_pct "88.2"; chr13 rmsk exon 66612629 66612956 1747 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0303"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 66612957 66613628 2989 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0303"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chr13 rmsk exon 66613659 66613701 292 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0303"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1320"; chr13 rmsk exon 66613713 66614679 21047 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0303"; repClass "LTR"; repEnd "2459"; repFamily "ERV1"; repLeft "-2758"; repStart "1655"; chr13 rmsk exon 66615270 66617944 21047 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0303"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2170"; chr13 rmsk exon 66617946 66618271 1717 + . gene_id "MER61_13q21.32"; transcript_id "MER61_13q21.32"; locus "MER61_13q21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0303"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_13q21.32d ### chr13 rmsk gene 67284504 67287091 . + . gene_id "ERV316A3_13q21.32d"; transcript_id "ERV316A3_13q21.32d"; locus "ERV316A3_13q21.32d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2204"; model_cov "2015"; model_pct "38.6"; chr13 rmsk exon 67284504 67286200 1921 + . gene_id "ERV316A3_13q21.32d"; transcript_id "ERV316A3_13q21.32d"; locus "ERV316A3_13q21.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2204"; repClass "LTR"; repEnd "4446"; repFamily "ERVL"; repLeft "-780"; repStart "2666"; chr13 rmsk exon 67286859 67287091 589 + . gene_id "ERV316A3_13q21.32d"; transcript_id "ERV316A3_13q21.32d"; locus "ERV316A3_13q21.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2204"; repClass "LTR"; repEnd "4609"; repFamily "ERVL"; repLeft "-617"; repStart "4374"; ### ERVLB4_13q21.32c ### chr13 rmsk gene 67325928 67326676 . - . gene_id "ERVLB4_13q21.32c"; transcript_id "ERVLB4_13q21.32c"; locus "ERVLB4_13q21.32c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1371"; model_cov "731"; model_pct "12.8"; chr13 rmsk exon 67325928 67326676 1171 - . gene_id "ERVLB4_13q21.32c"; transcript_id "ERVLB4_13q21.32c"; locus "ERVLB4_13q21.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1371"; repClass "LTR"; repEnd "4792"; repFamily "ERVL"; repLeft "4061"; repStart "-922"; ### HERVP71A_13q21.32 ### chr13 rmsk gene 67340030 67348603 . - . gene_id "HERVP71A_13q21.32"; transcript_id "HERVP71A_13q21.32"; locus "HERVP71A_13q21.32"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0065"; model_cov "7586"; model_pct "99.9"; chr13 rmsk exon 67340030 67340102 479 - . gene_id "HERVP71A_13q21.32"; transcript_id "HERVP71A_13q21.32"; locus "HERVP71A_13q21.32"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0065"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "386"; repStart "0"; chr13 rmsk exon 67340201 67340591 2608 - . gene_id "HERVP71A_13q21.32"; transcript_id "HERVP71A_13q21.32"; locus "HERVP71A_13q21.32"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0065"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "3"; repStart "-62"; chr13 rmsk exon 67340596 67348147 52876 - . gene_id "HERVP71A_13q21.32"; transcript_id "HERVP71A_13q21.32"; locus "HERVP71A_13q21.32"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0065"; repClass "LTR"; repEnd "7587"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr13 rmsk exon 67348148 67348603 3137 - . gene_id "HERVP71A_13q21.32"; transcript_id "HERVP71A_13q21.32"; locus "HERVP71A_13q21.32"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0065"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVEA_13q21.32 ### chr13 rmsk gene 67397253 67405914 . + . gene_id "HERVEA_13q21.32"; transcript_id "HERVEA_13q21.32"; locus "HERVEA_13q21.32"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0073"; model_cov "7843"; model_pct "99.9"; chr13 rmsk exon 67397253 67397714 3750 + . gene_id "HERVEA_13q21.32"; transcript_id "HERVEA_13q21.32"; locus "HERVEA_13q21.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0073"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 67397715 67402438 59698 + . gene_id "HERVEA_13q21.32"; transcript_id "HERVEA_13q21.32"; locus "HERVEA_13q21.32"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0073"; repClass "LTR"; repEnd "4842"; repFamily "ERV1"; repLeft "-3005"; repStart "1"; chr13 rmsk exon 67402520 67405447 59698 + . gene_id "HERVEA_13q21.32"; transcript_id "HERVEA_13q21.32"; locus "HERVEA_13q21.32"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0073"; repClass "LTR"; repEnd "7845"; repFamily "ERV1"; repLeft "-2"; repStart "4843"; chr13 rmsk exon 67405452 67405914 3625 + . gene_id "HERVEA_13q21.32"; transcript_id "HERVEA_13q21.32"; locus "HERVEA_13q21.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0073"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q21.32c ### chr13 rmsk gene 67493040 67494354 . + . gene_id "ERVLE_13q21.32c"; transcript_id "ERVLE_13q21.32c"; locus "ERVLE_13q21.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2870"; model_cov "1046"; model_pct "18.5"; chr13 rmsk exon 67493040 67493336 624 + . gene_id "ERVLE_13q21.32c"; transcript_id "ERVLE_13q21.32c"; locus "ERVLE_13q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2870"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "-1111"; repStart "4260"; chr13 rmsk exon 67493520 67493656 442 + . gene_id "ERVLE_13q21.32c"; transcript_id "ERVLE_13q21.32c"; locus "ERVLE_13q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2870"; repClass "LTR"; repEnd "4699"; repFamily "ERVL"; repLeft "-968"; repStart "4550"; chr13 rmsk exon 67493775 67494354 1764 + . gene_id "ERVLE_13q21.32c"; transcript_id "ERVLE_13q21.32c"; locus "ERVLE_13q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2870"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "-168"; repStart "4898"; ### ERVLE_13q21.32d ### chr13 rmsk gene 67657148 67658573 . + . gene_id "ERVLE_13q21.32d"; transcript_id "ERVLE_13q21.32d"; locus "ERVLE_13q21.32d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2871"; model_cov "1033"; model_pct "18.2"; chr13 rmsk exon 67657148 67657301 368 + . gene_id "ERVLE_13q21.32d"; transcript_id "ERVLE_13q21.32d"; locus "ERVLE_13q21.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2871"; repClass "LTR"; repEnd "178"; repFamily "ERVL"; repLeft "-5489"; repStart "14"; chr13 rmsk exon 67657719 67658573 1099 + . gene_id "ERVLE_13q21.32d"; transcript_id "ERVLE_13q21.32d"; locus "ERVLE_13q21.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2871"; repClass "LTR"; repEnd "1434"; repFamily "ERVL"; repLeft "-4233"; repStart "565"; ### ERVL_13q21.32c ### chr13 rmsk gene 67771909 67774570 . + . gene_id "ERVL_13q21.32c"; transcript_id "ERVL_13q21.32c"; locus "ERVL_13q21.32c"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0348"; model_cov "1113"; model_pct "19.3"; chr13 rmsk exon 67771909 67771970 491 + . gene_id "ERVL_13q21.32c"; transcript_id "ERVL_13q21.32c"; locus "ERVL_13q21.32c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0348"; repClass "LTR"; repEnd "3607"; repFamily "ERVL"; repLeft "-2150"; repStart "3536"; chr13 rmsk exon 67773474 67773905 491 + . gene_id "ERVL_13q21.32c"; transcript_id "ERVL_13q21.32c"; locus "ERVL_13q21.32c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0348"; repClass "LTR"; repEnd "4055"; repFamily "ERVL"; repLeft "-1702"; repStart "3608"; chr13 rmsk exon 67773936 67774126 517 + . gene_id "ERVL_13q21.32c"; transcript_id "ERVL_13q21.32c"; locus "ERVL_13q21.32c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0348"; repClass "LTR"; repEnd "4262"; repFamily "ERVL"; repLeft "-1495"; repStart "4041"; chr13 rmsk exon 67774219 67774570 664 + . gene_id "ERVL_13q21.32c"; transcript_id "ERVL_13q21.32c"; locus "ERVL_13q21.32c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0348"; repClass "LTR"; repEnd "4774"; repFamily "ERVL"; repLeft "-983"; repStart "4400"; ### ERV316A3_13q21.32e ### chr13 rmsk gene 67849592 67852438 . - . gene_id "ERV316A3_13q21.32e"; transcript_id "ERV316A3_13q21.32e"; locus "ERV316A3_13q21.32e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2205"; model_cov "2458"; model_pct "47.0"; chr13 rmsk exon 67849592 67850421 1733 - . gene_id "ERV316A3_13q21.32e"; transcript_id "ERV316A3_13q21.32e"; locus "ERV316A3_13q21.32e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2205"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "1899"; repStart "-2514"; chr13 rmsk exon 67850779 67851297 488 - . gene_id "ERV316A3_13q21.32e"; transcript_id "ERV316A3_13q21.32e"; locus "ERV316A3_13q21.32e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2205"; repClass "LTR"; repEnd "2384"; repFamily "ERVL"; repLeft "1898"; repStart "-2842"; chr13 rmsk exon 67851376 67852438 1268 - . gene_id "ERV316A3_13q21.32e"; transcript_id "ERV316A3_13q21.32e"; locus "ERV316A3_13q21.32e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2205"; repClass "LTR"; repEnd "1522"; repFamily "ERVL"; repLeft "363"; repStart "-3704"; ### HERVL40_13q21.33a ### chr13 rmsk gene 68120118 68121238 . + . gene_id "HERVL40_13q21.33a"; transcript_id "HERVL40_13q21.33a"; locus "HERVL40_13q21.33a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0344"; model_cov "972"; model_pct "17.6"; chr13 rmsk exon 68120118 68120382 751 + . gene_id "HERVL40_13q21.33a"; transcript_id "HERVL40_13q21.33a"; locus "HERVL40_13q21.33a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0344"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "-2202"; repStart "3057"; chr13 rmsk exon 68120396 68120563 581 + . gene_id "HERVL40_13q21.33a"; transcript_id "HERVL40_13q21.33a"; locus "HERVL40_13q21.33a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0344"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-1924"; repStart "3439"; chr13 rmsk exon 68120726 68121238 1277 + . gene_id "HERVL40_13q21.33a"; transcript_id "HERVL40_13q21.33a"; locus "HERVL40_13q21.33a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0344"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "-1368"; repStart "3628"; ### MER61_13q21.33 ### chr13 rmsk gene 68256804 68261738 . + . gene_id "MER61_13q21.33"; transcript_id "MER61_13q21.33"; locus "MER61_13q21.33"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0304"; model_cov "4571"; model_pct "87.6"; chr13 rmsk exon 68256804 68257096 1124 + . gene_id "MER61_13q21.33"; transcript_id "MER61_13q21.33"; locus "MER61_13q21.33"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0304"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 68257097 68257726 1914 + . gene_id "MER61_13q21.33"; transcript_id "MER61_13q21.33"; locus "MER61_13q21.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0304"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "1"; chr13 rmsk exon 68257765 68261389 21482 + . gene_id "MER61_13q21.33"; transcript_id "MER61_13q21.33"; locus "MER61_13q21.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0304"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-11"; repStart "1411"; chr13 rmsk exon 68261402 68261738 2086 + . gene_id "MER61_13q21.33"; transcript_id "MER61_13q21.33"; locus "MER61_13q21.33"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0304"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVL74_13q21.33 ### chr13 rmsk gene 68428652 68430394 . - . gene_id "HERVL74_13q21.33"; transcript_id "HERVL74_13q21.33"; locus "HERVL74_13q21.33"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0083"; model_cov "1633"; model_pct "28.7"; chr13 rmsk exon 68428652 68430394 5010 - . gene_id "HERVL74_13q21.33"; transcript_id "HERVL74_13q21.33"; locus "HERVL74_13q21.33"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0083"; repClass "LTR"; repEnd "4681"; repFamily "ERVL"; repLeft "3048"; repStart "-1004"; ### PABLB_13q21.33 ### chr13 rmsk gene 68555084 68556156 . + . gene_id "PABLB_13q21.33"; transcript_id "PABLB_13q21.33"; locus "PABLB_13q21.33"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0076"; model_cov "1081"; model_pct "15.2"; chr13 rmsk exon 68555084 68556156 1172 + . gene_id "PABLB_13q21.33"; transcript_id "PABLB_13q21.33"; locus "PABLB_13q21.33"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0076"; repClass "LTR"; repEnd "3599"; repFamily "ERV1"; repLeft "-3523"; repStart "2518"; ### MER4_13q21.33 ### chr13 rmsk gene 68667998 68669095 . + . gene_id "MER4_13q21.33"; transcript_id "MER4_13q21.33"; locus "MER4_13q21.33"; category "internal"; intModel "MER4-int"; locid "MER4-int_0627"; model_cov "1133"; model_pct "17.2"; chr13 rmsk exon 68667998 68669095 6439 + . gene_id "MER4_13q21.33"; transcript_id "MER4_13q21.33"; locus "MER4_13q21.33"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0627"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-1392"; repStart "4073"; ### ERVLE_13q21.33a ### chr13 rmsk gene 68855068 68857284 . + . gene_id "ERVLE_13q21.33a"; transcript_id "ERVLE_13q21.33a"; locus "ERVLE_13q21.33a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2874"; model_cov "770"; model_pct "13.6"; chr13 rmsk exon 68855068 68855707 1658 + . gene_id "ERVLE_13q21.33a"; transcript_id "ERVLE_13q21.33a"; locus "ERVLE_13q21.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2874"; repClass "LTR"; repEnd "5507"; repFamily "ERVL"; repLeft "-160"; repStart "4833"; chr13 rmsk exon 68856679 68856775 284 + . gene_id "ERVLE_13q21.33a"; transcript_id "ERVLE_13q21.33a"; locus "ERVLE_13q21.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2874"; repClass "LTR"; repEnd "5648"; repFamily "ERVL"; repLeft "-19"; repStart "5552"; chr13 rmsk exon 68856799 68857284 456 + . gene_id "ERVLE_13q21.33a"; transcript_id "ERVLE_13q21.33a"; locus "ERVLE_13q21.33a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2874"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-163"; repStart "1"; ### HERVIP10FH_13q21.33 ### chr13 rmsk gene 68888651 68893551 . - . gene_id "HERVIP10FH_13q21.33"; transcript_id "HERVIP10FH_13q21.33"; locus "HERVIP10FH_13q21.33"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0134"; model_cov "4520"; model_pct "88.6"; chr13 rmsk exon 68888651 68889241 3037 - . gene_id "HERVIP10FH_13q21.33"; transcript_id "HERVIP10FH_13q21.33"; locus "HERVIP10FH_13q21.33"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0134"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "1"; repStart "-5"; chr13 rmsk exon 68889242 68893452 28903 - . gene_id "HERVIP10FH_13q21.33"; transcript_id "HERVIP10FH_13q21.33"; locus "HERVIP10FH_13q21.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0134"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "704"; repStart "0"; chr13 rmsk exon 68893433 68893551 940 - . gene_id "HERVIP10FH_13q21.33"; transcript_id "HERVIP10FH_13q21.33"; locus "HERVIP10FH_13q21.33"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0134"; repClass "LTR"; repEnd "-221"; repFamily "ERV1"; repLeft "-343"; repStart "-5323"; ### HERVW_13q21.33 ### chr13 rmsk gene 69221626 69225336 . + . gene_id "HERVW_13q21.33"; transcript_id "HERVW_13q21.33"; locus "HERVW_13q21.33"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0244"; model_cov "3054"; model_pct "35.4"; chr13 rmsk exon 69221626 69222417 5684 + . gene_id "HERVW_13q21.33"; transcript_id "HERVW_13q21.33"; locus "HERVW_13q21.33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0244"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 69222418 69225336 16520 + . gene_id "HERVW_13q21.33"; transcript_id "HERVW_13q21.33"; locus "HERVW_13q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0244"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-5571"; repStart "1"; ### HERVL_13q21.33a ### chr13 rmsk gene 69225314 69227095 . + . gene_id "HERVL_13q21.33a"; transcript_id "HERVL_13q21.33a"; locus "HERVL_13q21.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1037"; model_cov "1469"; model_pct "26.0"; chr13 rmsk exon 69225314 69226757 9749 + . gene_id "HERVL_13q21.33a"; transcript_id "HERVL_13q21.33a"; locus "HERVL_13q21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1037"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4185"; chr13 rmsk exon 69226758 69227095 1790 + . gene_id "HERVL_13q21.33a"; transcript_id "HERVL_13q21.33a"; locus "HERVL_13q21.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1037"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-260"; repStart "-147"; ### ERVL_13q21.33 ### chr13 rmsk gene 69242098 69246653 . - . gene_id "ERVL_13q21.33"; transcript_id "ERVL_13q21.33"; locus "ERVL_13q21.33"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0349"; model_cov "3891"; model_pct "67.6"; chr13 rmsk exon 69242098 69242442 1294 - . gene_id "ERVL_13q21.33"; transcript_id "ERVL_13q21.33"; locus "ERVL_13q21.33"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0349"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "85"; repStart "0"; chr13 rmsk exon 69242484 69242700 1225 - . gene_id "ERVL_13q21.33"; transcript_id "ERVL_13q21.33"; locus "ERVL_13q21.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0349"; repClass "LTR"; repEnd "5744"; repFamily "ERVL"; repLeft "5527"; repStart "-13"; chr13 rmsk exon 69243012 69246653 19215 - . gene_id "ERVL_13q21.33"; transcript_id "ERVL_13q21.33"; locus "ERVL_13q21.33"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0349"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "1855"; repStart "-228"; ### ERV316A3_13q21.33a ### chr13 rmsk gene 69271964 69272756 . - . gene_id "ERV316A3_13q21.33a"; transcript_id "ERV316A3_13q21.33a"; locus "ERV316A3_13q21.33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2206"; model_cov "801"; model_pct "15.3"; chr13 rmsk exon 69271964 69272756 1557 - . gene_id "ERV316A3_13q21.33a"; transcript_id "ERV316A3_13q21.33a"; locus "ERV316A3_13q21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2206"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "3738"; repStart "-687"; ### ERVLE_13q21.33b ### chr13 rmsk gene 69275183 69276802 . - . gene_id "ERVLE_13q21.33b"; transcript_id "ERVLE_13q21.33b"; locus "ERVLE_13q21.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2876"; model_cov "935"; model_pct "16.5"; chr13 rmsk exon 69275183 69275832 1225 - . gene_id "ERVLE_13q21.33b"; transcript_id "ERVLE_13q21.33b"; locus "ERVLE_13q21.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2876"; repClass "LTR"; repEnd "3087"; repFamily "ERVL"; repLeft "2415"; repStart "-2580"; chr13 rmsk exon 69276503 69276652 324 - . gene_id "ERVLE_13q21.33b"; transcript_id "ERVLE_13q21.33b"; locus "ERVLE_13q21.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2876"; repClass "LTR"; repEnd "1951"; repFamily "ERVL"; repLeft "1804"; repStart "-3716"; chr13 rmsk exon 69276691 69276802 326 - . gene_id "ERVLE_13q21.33b"; transcript_id "ERVLE_13q21.33b"; locus "ERVLE_13q21.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2876"; repClass "LTR"; repEnd "1430"; repFamily "ERVL"; repLeft "1314"; repStart "-4237"; ### HERVL_13q21.33b ### chr13 rmsk gene 69499137 69505954 . - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1039"; model_cov "5648"; model_pct "99.9"; chr13 rmsk exon 69499137 69499563 2652 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 69499564 69499641 818 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5578"; repStart "0"; chr13 rmsk exon 69499949 69500000 818 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "5577"; repFamily "ERVL"; repLeft "5527"; repStart "-77"; chr13 rmsk exon 69500003 69505452 41299 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "5523"; repFamily "ERVL"; repLeft "1"; repStart "-131"; chr13 rmsk exon 69505453 69505526 2770 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr13 rmsk exon 69505580 69505954 2770 - . gene_id "HERVL_13q21.33b"; transcript_id "HERVL_13q21.33b"; locus "HERVL_13q21.33b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1039"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### ERVLB4_13q21.33a ### chr13 rmsk gene 69556541 69558978 . + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1376"; model_cov "1045"; model_pct "18.3"; chr13 rmsk exon 69556541 69556664 510 + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1376"; repClass "LTR"; repEnd "129"; repFamily "ERVL"; repLeft "-427"; repStart "3"; chr13 rmsk exon 69556665 69556781 4689 + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1376"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-992"; repStart "4598"; chr13 rmsk exon 69557216 69557820 4689 + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1376"; repClass "LTR"; repEnd "5356"; repFamily "ERVL"; repLeft "-358"; repStart "4723"; chr13 rmsk exon 69558191 69558459 4689 + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1376"; repClass "LTR"; repEnd "5645"; repFamily "ERVL"; repLeft "-69"; repStart "5357"; chr13 rmsk exon 69558511 69558978 1042 + . gene_id "ERVLB4_13q21.33a"; transcript_id "ERVLB4_13q21.33a"; locus "ERVLB4_13q21.33a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1376"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_13q21.33b ### chr13 rmsk gene 69616063 69618494 . - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2207"; model_cov "1367"; model_pct "26.2"; chr13 rmsk exon 69616063 69616287 234 - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2207"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "1"; repStart "-237"; chr13 rmsk exon 69616692 69616786 289 - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2207"; repClass "LTR"; repEnd "4771"; repFamily "ERVL"; repLeft "4673"; repStart "-455"; chr13 rmsk exon 69617002 69617126 318 - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2207"; repClass "LTR"; repEnd "4472"; repFamily "ERVL"; repLeft "4343"; repStart "-754"; chr13 rmsk exon 69617221 69618386 1192 - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2207"; repClass "LTR"; repEnd "1834"; repFamily "ERVL"; repLeft "694"; repStart "-3392"; chr13 rmsk exon 69618417 69618494 322 - . gene_id "ERV316A3_13q21.33b"; transcript_id "ERV316A3_13q21.33b"; locus "ERV316A3_13q21.33b"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2207"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "399"; repStart "-13"; ### ERVLE_13q21.33c ### chr13 rmsk gene 69994257 69998590 . + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2878"; model_cov "1657"; model_pct "29.2"; chr13 rmsk exon 69994257 69994666 341 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "956"; repFamily "ERVL"; repLeft "-4711"; repStart "531"; chr13 rmsk exon 69995522 69996022 1003 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "2252"; repFamily "ERVL"; repLeft "-3415"; repStart "1730"; chr13 rmsk exon 69996322 69996530 1003 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "-3208"; repStart "2253"; chr13 rmsk exon 69996726 69996843 301 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "2808"; repFamily "ERVL"; repLeft "-2859"; repStart "2679"; chr13 rmsk exon 69998063 69998322 485 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "3147"; repFamily "ERVL"; repLeft "-2520"; repStart "2883"; chr13 rmsk exon 69998489 69998590 271 + . gene_id "ERVLE_13q21.33c"; transcript_id "ERVLE_13q21.33c"; locus "ERVLE_13q21.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2878"; repClass "LTR"; repEnd "3554"; repFamily "ERVL"; repLeft "-2113"; repStart "3443"; ### HERVL40_13q21.33b ### chr13 rmsk gene 70274877 70277498 . + . gene_id "HERVL40_13q21.33b"; transcript_id "HERVL40_13q21.33b"; locus "HERVL40_13q21.33b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0347"; model_cov "1051"; model_pct "19.0"; chr13 rmsk exon 70274877 70275676 1958 + . gene_id "HERVL40_13q21.33b"; transcript_id "HERVL40_13q21.33b"; locus "HERVL40_13q21.33b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0347"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-989"; repStart "3712"; chr13 rmsk exon 70276820 70277032 895 + . gene_id "HERVL40_13q21.33b"; transcript_id "HERVL40_13q21.33b"; locus "HERVL40_13q21.33b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0347"; repClass "LTR"; repEnd "5517"; repFamily "ERVL"; repLeft "-13"; repStart "5295"; chr13 rmsk exon 70277035 70277498 612 + . gene_id "HERVL40_13q21.33b"; transcript_id "HERVL40_13q21.33b"; locus "HERVL40_13q21.33b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0347"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL40_13q21.33c ### chr13 rmsk gene 70363965 70368042 . + . gene_id "HERVL40_13q21.33c"; transcript_id "HERVL40_13q21.33c"; locus "HERVL40_13q21.33c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0349"; model_cov "2046"; model_pct "37.0"; chr13 rmsk exon 70363965 70364746 1739 + . gene_id "HERVL40_13q21.33c"; transcript_id "HERVL40_13q21.33c"; locus "HERVL40_13q21.33c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0349"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "-3070"; repStart "1641"; chr13 rmsk exon 70365510 70365862 2820 + . gene_id "HERVL40_13q21.33c"; transcript_id "HERVL40_13q21.33c"; locus "HERVL40_13q21.33c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0349"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "-2680"; repStart "2481"; chr13 rmsk exon 70366557 70367204 2820 + . gene_id "HERVL40_13q21.33c"; transcript_id "HERVL40_13q21.33c"; locus "HERVL40_13q21.33c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0349"; repClass "LTR"; repEnd "3475"; repFamily "ERVL"; repLeft "-2055"; repStart "2851"; chr13 rmsk exon 70367808 70368042 769 + . gene_id "HERVL40_13q21.33c"; transcript_id "HERVL40_13q21.33c"; locus "HERVL40_13q21.33c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0349"; repClass "LTR"; repEnd "3962"; repFamily "ERVL"; repLeft "-1568"; repStart "3728"; ### PABLA_13q21.33 ### chr13 rmsk gene 70883392 70885767 . + . gene_id "PABLA_13q21.33"; transcript_id "PABLA_13q21.33"; locus "PABLA_13q21.33"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0121"; model_cov "2751"; model_pct "54.9"; chr13 rmsk exon 70883392 70884859 5793 + . gene_id "PABLA_13q21.33"; transcript_id "PABLA_13q21.33"; locus "PABLA_13q21.33"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0121"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-3165"; repStart "-615"; chr13 rmsk exon 70885175 70885767 5793 + . gene_id "PABLA_13q21.33"; transcript_id "PABLA_13q21.33"; locus "PABLA_13q21.33"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0121"; repClass "LTR"; repEnd "3313"; repFamily "ERV1"; repLeft "-1702"; repStart "3027"; ### HML5_13q21.33 ### chr13 rmsk gene 71026271 71031305 . - . gene_id "HML5_13q21.33"; transcript_id "HML5_13q21.33"; locus "HML5_13q21.33"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0095"; model_cov "3903"; model_pct "57.1"; chr13 rmsk exon 71026271 71026750 2840 - . gene_id "HML5_13q21.33"; transcript_id "HML5_13q21.33"; locus "HML5_13q21.33"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0095"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr13 rmsk exon 71026751 71029904 20937 - . gene_id "HML5_13q21.33"; transcript_id "HML5_13q21.33"; locus "HML5_13q21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0095"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2333"; repStart "-1502"; chr13 rmsk exon 71029906 71030821 5669 - . gene_id "HML5_13q21.33"; transcript_id "HML5_13q21.33"; locus "HML5_13q21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0095"; repClass "LTR"; repEnd "904"; repFamily "ERVK"; repLeft "3"; repStart "-5933"; chr13 rmsk exon 71030824 71031305 3014 - . gene_id "HML5_13q21.33"; transcript_id "HML5_13q21.33"; locus "HML5_13q21.33"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0095"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_13q21.33b ### chr13 rmsk gene 71104212 71105497 . - . gene_id "ERVLB4_13q21.33b"; transcript_id "ERVLB4_13q21.33b"; locus "ERVLB4_13q21.33b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1378"; model_cov "745"; model_pct "13.0"; chr13 rmsk exon 71104212 71104269 3302 - . gene_id "ERVLB4_13q21.33b"; transcript_id "ERVLB4_13q21.33b"; locus "ERVLB4_13q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1378"; repClass "LTR"; repEnd "770"; repFamily "ERVL"; repLeft "713"; repStart "-4944"; chr13 rmsk exon 71104482 71105139 3302 - . gene_id "ERVLB4_13q21.33b"; transcript_id "ERVLB4_13q21.33b"; locus "ERVLB4_13q21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1378"; repClass "LTR"; repEnd "712"; repFamily "ERVL"; repLeft "24"; repStart "-5002"; chr13 rmsk exon 71105227 71105497 771 - . gene_id "ERVLB4_13q21.33b"; transcript_id "ERVLB4_13q21.33b"; locus "ERVLB4_13q21.33b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1378"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "216"; repStart "0"; ### HERVL18_13q21.33 ### chr13 rmsk gene 72018779 72024309 . + . gene_id "HERVL18_13q21.33"; transcript_id "HERVL18_13q21.33"; locus "HERVL18_13q21.33"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0120"; model_cov "4777"; model_pct "79.0"; chr13 rmsk exon 72018779 72019126 2220 + . gene_id "HERVL18_13q21.33"; transcript_id "HERVL18_13q21.33"; locus "HERVL18_13q21.33"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0120"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr13 rmsk exon 72019151 72020744 9693 + . gene_id "HERVL18_13q21.33"; transcript_id "HERVL18_13q21.33"; locus "HERVL18_13q21.33"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0120"; repClass "LTR"; repEnd "2400"; repFamily "ERVL"; repLeft "-3647"; repStart "791"; chr13 rmsk exon 72020745 72023955 19624 + . gene_id "HERVL18_13q21.33"; transcript_id "HERVL18_13q21.33"; locus "HERVL18_13q21.33"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0120"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "2879"; chr13 rmsk exon 72023957 72024309 2465 + . gene_id "HERVL18_13q21.33"; transcript_id "HERVL18_13q21.33"; locus "HERVL18_13q21.33"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0120"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_13q21.33d ### chr13 rmsk gene 72222493 72225549 . - . gene_id "ERVLE_13q21.33d"; transcript_id "ERVLE_13q21.33d"; locus "ERVLE_13q21.33d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2882"; model_cov "2768"; model_pct "48.8"; chr13 rmsk exon 72222493 72223318 1593 - . gene_id "ERVLE_13q21.33d"; transcript_id "ERVLE_13q21.33d"; locus "ERVLE_13q21.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2882"; repClass "LTR"; repEnd "4108"; repFamily "ERVL"; repLeft "3289"; repStart "-1559"; chr13 rmsk exon 72223700 72224496 1160 - . gene_id "ERVLE_13q21.33d"; transcript_id "ERVLE_13q21.33d"; locus "ERVLE_13q21.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2882"; repClass "LTR"; repEnd "3271"; repFamily "ERVL"; repLeft "2434"; repStart "-2396"; chr13 rmsk exon 72224551 72225549 875 - . gene_id "ERVLE_13q21.33d"; transcript_id "ERVLE_13q21.33d"; locus "ERVLE_13q21.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2882"; repClass "LTR"; repEnd "2258"; repFamily "ERVL"; repLeft "1146"; repStart "-3409"; ### ERVLE_13q21.33e ### chr13 rmsk gene 72474762 72476637 . + . gene_id "ERVLE_13q21.33e"; transcript_id "ERVLE_13q21.33e"; locus "ERVLE_13q21.33e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2884"; model_cov "1579"; model_pct "27.9"; chr13 rmsk exon 72474762 72474841 3181 + . gene_id "ERVLE_13q21.33e"; transcript_id "ERVLE_13q21.33e"; locus "ERVLE_13q21.33e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2884"; repClass "LTR"; repEnd "2701"; repFamily "ERVL"; repLeft "-2966"; repStart "2630"; chr13 rmsk exon 72475147 72476637 3181 + . gene_id "ERVLE_13q21.33e"; transcript_id "ERVLE_13q21.33e"; locus "ERVLE_13q21.33e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2884"; repClass "LTR"; repEnd "4210"; repFamily "ERVL"; repLeft "-1457"; repStart "2702"; ### ERVLB4_13q22.1 ### chr13 rmsk gene 73351752 73354248 . - . gene_id "ERVLB4_13q22.1"; transcript_id "ERVLB4_13q22.1"; locus "ERVLB4_13q22.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1380"; model_cov "2261"; model_pct "39.6"; chr13 rmsk exon 73351752 73351995 1216 - . gene_id "ERVLB4_13q22.1"; transcript_id "ERVLB4_13q22.1"; locus "ERVLB4_13q22.1"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1380"; repClass "LTR"; repEnd "249"; repFamily "ERVL"; repLeft "6"; repStart "-307"; chr13 rmsk exon 73352001 73354248 13025 - . gene_id "ERVLB4_13q22.1"; transcript_id "ERVLB4_13q22.1"; locus "ERVLB4_13q22.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1380"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3453"; repStart "0"; ### MER61_13q22.1 ### chr13 rmsk gene 73440159 73445618 . + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0305"; model_cov "4037"; model_pct "77.4"; chr13 rmsk exon 73440159 73440486 1639 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0305"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 73440487 73440966 1907 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0305"; repClass "LTR"; repEnd "487"; repFamily "ERV1"; repLeft "-4730"; repStart "1"; chr13 rmsk exon 73441018 73442558 18601 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0305"; repClass "LTR"; repEnd "3013"; repFamily "ERV1"; repLeft "-2204"; repStart "1655"; chr13 rmsk exon 73442858 73443173 18601 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0305"; repClass "LTR"; repEnd "3341"; repFamily "ERV1"; repLeft "-1876"; repStart "3014"; chr13 rmsk exon 73443450 73443722 18601 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0305"; repClass "LTR"; repEnd "3603"; repFamily "ERV1"; repLeft "-1614"; repStart "3342"; chr13 rmsk exon 73443749 73445278 12058 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0305"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-7"; repStart "3605"; chr13 rmsk exon 73445286 73445618 1740 + . gene_id "MER61_13q22.1"; transcript_id "MER61_13q22.1"; locus "MER61_13q22.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0305"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q22.1a ### chr13 rmsk gene 73485388 73485959 . + . gene_id "ERVLE_13q22.1a"; transcript_id "ERVLE_13q22.1a"; locus "ERVLE_13q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2885"; model_cov "597"; model_pct "10.5"; chr13 rmsk exon 73485388 73485959 1039 + . gene_id "ERVLE_13q22.1a"; transcript_id "ERVLE_13q22.1a"; locus "ERVLE_13q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2885"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "-168"; repStart "4902"; ### ERVLE_13q22.1b ### chr13 rmsk gene 74265055 74269349 . + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2886"; model_cov "2969"; model_pct "52.4"; chr13 rmsk exon 74265055 74265325 437 + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2886"; repClass "LTR"; repEnd "1480"; repFamily "ERVL"; repLeft "-4187"; repStart "1212"; chr13 rmsk exon 74265480 74266104 1879 + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2886"; repClass "LTR"; repEnd "2445"; repFamily "ERVL"; repLeft "-3222"; repStart "1812"; chr13 rmsk exon 74266081 74267125 1291 + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2886"; repClass "LTR"; repEnd "4075"; repFamily "ERVL"; repLeft "-1592"; repStart "3005"; chr13 rmsk exon 74268307 74268596 497 + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2886"; repClass "LTR"; repEnd "4585"; repFamily "ERVL"; repLeft "-1082"; repStart "4188"; chr13 rmsk exon 74268752 74269349 1002 + . gene_id "ERVLE_13q22.1b"; transcript_id "ERVLE_13q22.1b"; locus "ERVLE_13q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2886"; repClass "LTR"; repEnd "5367"; repFamily "ERVL"; repLeft "-300"; repStart "4766"; ### ERVLE_13q22.1c ### chr13 rmsk gene 74641580 74643436 . + . gene_id "ERVLE_13q22.1c"; transcript_id "ERVLE_13q22.1c"; locus "ERVLE_13q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2887"; model_cov "1191"; model_pct "21.0"; chr13 rmsk exon 74641580 74642540 2434 + . gene_id "ERVLE_13q22.1c"; transcript_id "ERVLE_13q22.1c"; locus "ERVLE_13q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2887"; repClass "LTR"; repEnd "4060"; repFamily "ERVL"; repLeft "-1607"; repStart "3068"; chr13 rmsk exon 74643241 74643436 2434 + . gene_id "ERVLE_13q22.1c"; transcript_id "ERVLE_13q22.1c"; locus "ERVLE_13q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2887"; repClass "LTR"; repEnd "4260"; repFamily "ERVL"; repLeft "-1407"; repStart "4061"; ### LTR57_13q22.1 ### chr13 rmsk gene 74747273 74752296 . + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0137"; model_cov "3243"; model_pct "60.7"; chr13 rmsk exon 74747273 74747674 2162 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr13 rmsk exon 74747676 74747980 1253 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "-5058"; repStart "2"; chr13 rmsk exon 74748428 74749296 7051 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "-4175"; repStart "301"; chr13 rmsk exon 74749593 74750063 7051 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "1677"; repFamily "ERVL"; repLeft "-3666"; repStart "1169"; chr13 rmsk exon 74750061 74750142 423 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "-2747"; repStart "2515"; chr13 rmsk exon 74750128 74750181 354 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "2845"; repFamily "ERVL"; repLeft "-2498"; repStart "2792"; chr13 rmsk exon 74750170 74751303 6972 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "-324"; repStart "3882"; chr13 rmsk exon 74751576 74751889 1967 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "5029"; chr13 rmsk exon 74751898 74752296 2317 + . gene_id "LTR57_13q22.1"; transcript_id "LTR57_13q22.1"; locus "LTR57_13q22.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0137"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER101_13q22.1 ### chr13 rmsk gene 74780839 74782173 . + . gene_id "MER101_13q22.1"; transcript_id "MER101_13q22.1"; locus "MER101_13q22.1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0298"; model_cov "1253"; model_pct "18.9"; chr13 rmsk exon 74780839 74781971 3294 + . gene_id "MER101_13q22.1"; transcript_id "MER101_13q22.1"; locus "MER101_13q22.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0298"; repClass "LTR"; repEnd "4599"; repFamily "ERV1"; repLeft "-2040"; repStart "3346"; chr13 rmsk exon 74782054 74782173 688 + . gene_id "MER101_13q22.1"; transcript_id "MER101_13q22.1"; locus "MER101_13q22.1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0298"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "-1"; repStart "327"; ### HERVL_13q22.1 ### chr13 rmsk gene 74804240 74809282 . + . gene_id "HERVL_13q22.1"; transcript_id "HERVL_13q22.1"; locus "HERVL_13q22.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1040"; model_cov "4629"; model_pct "81.9"; chr13 rmsk exon 74804240 74808893 35442 + . gene_id "HERVL_13q22.1"; transcript_id "HERVL_13q22.1"; locus "HERVL_13q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1040"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1025"; chr13 rmsk exon 74808894 74809282 2988 + . gene_id "HERVL_13q22.1"; transcript_id "HERVL_13q22.1"; locus "HERVL_13q22.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1040"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; ### ERV316A3_13q22.2a ### chr13 rmsk gene 75122354 75124757 . + . gene_id "ERV316A3_13q22.2a"; transcript_id "ERV316A3_13q22.2a"; locus "ERV316A3_13q22.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2209"; model_cov "1829"; model_pct "35.0"; chr13 rmsk exon 75122354 75122646 1127 + . gene_id "ERV316A3_13q22.2a"; transcript_id "ERV316A3_13q22.2a"; locus "ERV316A3_13q22.2a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2209"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "181"; chr13 rmsk exon 75122895 75124317 4156 + . gene_id "ERV316A3_13q22.2a"; transcript_id "ERV316A3_13q22.2a"; locus "ERV316A3_13q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2209"; repClass "LTR"; repEnd "1464"; repFamily "ERVL"; repLeft "-3762"; repStart "39"; chr13 rmsk exon 75124334 75124502 533 + . gene_id "ERV316A3_13q22.2a"; transcript_id "ERV316A3_13q22.2a"; locus "ERV316A3_13q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2209"; repClass "LTR"; repEnd "1926"; repFamily "ERVL"; repLeft "-3300"; repStart "1719"; chr13 rmsk exon 75124557 75124757 803 + . gene_id "ERV316A3_13q22.2a"; transcript_id "ERV316A3_13q22.2a"; locus "ERV316A3_13q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2209"; repClass "LTR"; repEnd "2718"; repFamily "ERVL"; repLeft "-2508"; repStart "2521"; ### ERV316A3_13q22.2b ### chr13 rmsk gene 76589678 76590803 . - . gene_id "ERV316A3_13q22.2b"; transcript_id "ERV316A3_13q22.2b"; locus "ERV316A3_13q22.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2210"; model_cov "1117"; model_pct "21.4"; chr13 rmsk exon 76589678 76590803 2474 - . gene_id "ERV316A3_13q22.2b"; transcript_id "ERV316A3_13q22.2b"; locus "ERV316A3_13q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2210"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "1487"; repStart "-2622"; ### ERV316A3_13q22.3a ### chr13 rmsk gene 77316330 77318289 . - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2211"; model_cov "860"; model_pct "16.5"; chr13 rmsk exon 77316330 77316528 350 - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2211"; repClass "LTR"; repEnd "208"; repFamily "ERVL"; repLeft "1"; repStart "-230"; chr13 rmsk exon 77316792 77316938 1546 - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2211"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "4740"; repStart "-331"; chr13 rmsk exon 77317252 77317656 1546 - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2211"; repClass "LTR"; repEnd "4739"; repFamily "ERVL"; repLeft "4279"; repStart "-487"; chr13 rmsk exon 77318008 77318158 1546 - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2211"; repClass "LTR"; repEnd "4278"; repFamily "ERVL"; repLeft "4129"; repStart "-948"; chr13 rmsk exon 77318194 77318289 444 - . gene_id "ERV316A3_13q22.3a"; transcript_id "ERV316A3_13q22.3a"; locus "ERV316A3_13q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2211"; repClass "LTR"; repEnd "3735"; repFamily "ERVL"; repLeft "3639"; repStart "-1491"; ### ERV316A3_13q22.3b ### chr13 rmsk gene 77336186 77339601 . + . gene_id "ERV316A3_13q22.3b"; transcript_id "ERV316A3_13q22.3b"; locus "ERV316A3_13q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2212"; model_cov "2426"; model_pct "46.4"; chr13 rmsk exon 77336186 77337790 4349 + . gene_id "ERV316A3_13q22.3b"; transcript_id "ERV316A3_13q22.3b"; locus "ERV316A3_13q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2212"; repClass "LTR"; repEnd "4319"; repFamily "ERVL"; repLeft "-907"; repStart "2706"; chr13 rmsk exon 77338311 77339076 4349 + . gene_id "ERV316A3_13q22.3b"; transcript_id "ERV316A3_13q22.3b"; locus "ERV316A3_13q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2212"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "-93"; repStart "4320"; chr13 rmsk exon 77339168 77339601 1157 + . gene_id "ERV316A3_13q22.3b"; transcript_id "ERV316A3_13q22.3b"; locus "ERV316A3_13q22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2212"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### ERVLE_13q22.3a ### chr13 rmsk gene 77362854 77363449 . - . gene_id "ERVLE_13q22.3a"; transcript_id "ERVLE_13q22.3a"; locus "ERVLE_13q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2889"; model_cov "618"; model_pct "10.9"; chr13 rmsk exon 77362854 77363449 773 - . gene_id "ERVLE_13q22.3a"; transcript_id "ERVLE_13q22.3a"; locus "ERVLE_13q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2889"; repClass "LTR"; repEnd "1123"; repFamily "ERVL"; repLeft "505"; repStart "-4544"; ### ERVLE_13q22.3b ### chr13 rmsk gene 77491391 77492018 . + . gene_id "ERVLE_13q22.3b"; transcript_id "ERVLE_13q22.3b"; locus "ERVLE_13q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2890"; model_cov "637"; model_pct "11.2"; chr13 rmsk exon 77491391 77492018 754 + . gene_id "ERVLE_13q22.3b"; transcript_id "ERVLE_13q22.3b"; locus "ERVLE_13q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2890"; repClass "LTR"; repEnd "1908"; repFamily "ERVL"; repLeft "-3759"; repStart "1271"; ### HERVH_13q22.3 ### chr13 rmsk gene 77933223 77939379 . - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0994"; model_cov "5265"; model_pct "68.3"; chr13 rmsk exon 77933223 77933632 3019 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 77933633 77934009 2324 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr13 rmsk exon 77934010 77934185 1095 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5640"; repStart "-1894"; chr13 rmsk exon 77934184 77934813 4228 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "5116"; repFamily "ERV1"; repLeft "4488"; repStart "-2597"; chr13 rmsk exon 77934816 77935662 5632 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr13 rmsk exon 77935642 77938977 9779 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "4276"; repFamily "ERV1"; repLeft "1060"; repStart "-3437"; chr13 rmsk exon 77938980 77939379 2785 - . gene_id "HERVH_13q22.3"; transcript_id "HERVH_13q22.3"; locus "HERVH_13q22.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0994"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### PRIMA41_13q22.3 ### chr13 rmsk gene 77949794 77952568 . - . gene_id "PRIMA41_13q22.3"; transcript_id "PRIMA41_13q22.3"; locus "PRIMA41_13q22.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0107"; model_cov "2195"; model_pct "28.3"; chr13 rmsk exon 77949794 77952053 14028 - . gene_id "PRIMA41_13q22.3"; transcript_id "PRIMA41_13q22.3"; locus "PRIMA41_13q22.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0107"; repClass "LTR"; repEnd "2198"; repFamily "ERV1"; repLeft "3"; repStart "-5558"; chr13 rmsk exon 77952054 77952568 3782 - . gene_id "PRIMA41_13q22.3"; transcript_id "PRIMA41_13q22.3"; locus "PRIMA41_13q22.3"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0107"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_13q22.3 ### chr13 rmsk gene 77970321 77974569 . - . gene_id "HARLEQUIN_13q22.3"; transcript_id "HARLEQUIN_13q22.3"; locus "HARLEQUIN_13q22.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0146"; model_cov "3983"; model_pct "57.8"; chr13 rmsk exon 77970321 77970459 966 - . gene_id "HARLEQUIN_13q22.3"; transcript_id "HARLEQUIN_13q22.3"; locus "HARLEQUIN_13q22.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0146"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "324"; repStart "0"; chr13 rmsk exon 77970602 77974178 27797 - . gene_id "HARLEQUIN_13q22.3"; transcript_id "HARLEQUIN_13q22.3"; locus "HARLEQUIN_13q22.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0146"; repClass "LTR"; repEnd "5163"; repFamily "ERV1"; repLeft "1578"; repStart "-1733"; chr13 rmsk exon 77974177 77974569 2602 - . gene_id "HARLEQUIN_13q22.3"; transcript_id "HARLEQUIN_13q22.3"; locus "HARLEQUIN_13q22.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0146"; repClass "LTR"; repEnd "-485"; repFamily "ERV1"; repLeft "-883"; repStart "-7381"; ### HERVK11_13q22.3 ### chr13 rmsk gene 78056554 78058996 . - . gene_id "HERVK11_13q22.3"; transcript_id "HERVK11_13q22.3"; locus "HERVK11_13q22.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0084"; model_cov "1364"; model_pct "17.2"; chr13 rmsk exon 78056554 78057631 3591 - . gene_id "HERVK11_13q22.3"; transcript_id "HERVK11_13q22.3"; locus "HERVK11_13q22.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0084"; repClass "LTR"; repEnd "1262"; repFamily "ERVK"; repLeft "31"; repStart "-4"; chr13 rmsk exon 78057632 78058996 10643 - . gene_id "HERVK11_13q22.3"; transcript_id "HERVK11_13q22.3"; locus "HERVK11_13q22.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0084"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6589"; repStart "0"; ### ERVLE_13q22.3c ### chr13 rmsk gene 78190426 78192995 . - . gene_id "ERVLE_13q22.3c"; transcript_id "ERVLE_13q22.3c"; locus "ERVLE_13q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2892"; model_cov "1691"; model_pct "29.8"; chr13 rmsk exon 78190426 78190673 438 - . gene_id "ERVLE_13q22.3c"; transcript_id "ERVLE_13q22.3c"; locus "ERVLE_13q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2892"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "3010"; repStart "-2408"; chr13 rmsk exon 78191638 78192031 961 - . gene_id "ERVLE_13q22.3c"; transcript_id "ERVLE_13q22.3c"; locus "ERVLE_13q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2892"; repClass "LTR"; repEnd "2834"; repFamily "ERVL"; repLeft "2427"; repStart "-2833"; chr13 rmsk exon 78192055 78192995 829 - . gene_id "ERVLE_13q22.3c"; transcript_id "ERVLE_13q22.3c"; locus "ERVLE_13q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2892"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "1346"; repStart "-3286"; ### HERVP71A_13q22.3 ### chr13 rmsk gene 78425495 78431070 . - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0066"; model_cov "3991"; model_pct "52.6"; chr13 rmsk exon 78425495 78425985 3606 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "1"; repStart "-92"; chr13 rmsk exon 78426048 78427763 7593 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "6906"; repFamily "ERV1"; repLeft "5142"; repStart "-684"; chr13 rmsk exon 78427762 78428710 6146 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "4700"; repFamily "ERV1"; repLeft "3751"; repStart "-2890"; chr13 rmsk exon 78429187 78430226 5869 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "1399"; repFamily "ERV1"; repLeft "387"; repStart "-6191"; chr13 rmsk exon 78430223 78430490 1835 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "275"; repFamily "ERV1"; repLeft "9"; repStart "-7315"; chr13 rmsk exon 78430498 78431070 3990 - . gene_id "HERVP71A_13q22.3"; transcript_id "HERVP71A_13q22.3"; locus "HERVP71A_13q22.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0066"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_13q31.1 ### chr13 rmsk gene 78664894 78669286 . - . gene_id "LTR25_13q31.1"; transcript_id "LTR25_13q31.1"; locus "LTR25_13q31.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0099"; model_cov "3383"; model_pct "47.1"; chr13 rmsk exon 78664894 78665563 11234 - . gene_id "LTR25_13q31.1"; transcript_id "LTR25_13q31.1"; locus "LTR25_13q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0099"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6565"; repStart "-1"; chr13 rmsk exon 78665872 78665895 11234 - . gene_id "LTR25_13q31.1"; transcript_id "LTR25_13q31.1"; locus "LTR25_13q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0099"; repClass "LTR"; repEnd "6564"; repFamily "ERV1"; repLeft "6550"; repStart "-624"; chr13 rmsk exon 78666205 78667817 17013 - . gene_id "LTR25_13q31.1"; transcript_id "LTR25_13q31.1"; locus "LTR25_13q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0099"; repClass "LTR"; repEnd "6549"; repFamily "ERV1"; repLeft "4943"; repStart "-639"; chr13 rmsk exon 78668129 78669286 17013 - . gene_id "LTR25_13q31.1"; transcript_id "LTR25_13q31.1"; locus "LTR25_13q31.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0099"; repClass "LTR"; repEnd "4947"; repFamily "ERV1"; repLeft "3806"; repStart "-2241"; ### ERV316A3_13q31.1a ### chr13 rmsk gene 79207050 79208370 . + . gene_id "ERV316A3_13q31.1a"; transcript_id "ERV316A3_13q31.1a"; locus "ERV316A3_13q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2214"; model_cov "1075"; model_pct "20.6"; chr13 rmsk exon 79207050 79208133 2297 + . gene_id "ERV316A3_13q31.1a"; transcript_id "ERV316A3_13q31.1a"; locus "ERV316A3_13q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2214"; repClass "LTR"; repEnd "5142"; repFamily "ERVL"; repLeft "-84"; repStart "4067"; chr13 rmsk exon 79208212 79208370 447 + . gene_id "ERV316A3_13q31.1a"; transcript_id "ERV316A3_13q31.1a"; locus "ERV316A3_13q31.1a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2214"; repClass "LTR"; repEnd "151"; repFamily "ERVL"; repLeft "-305"; repStart "8"; ### HERVH_13q31.1a ### chr13 rmsk gene 79274082 79279821 . + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0995"; model_cov "4911"; model_pct "63.7"; chr13 rmsk exon 79274082 79274491 2976 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; chr13 rmsk exon 79274494 79277542 21230 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr13 rmsk exon 79277529 79277676 931 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 79277667 79278169 3431 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr13 rmsk exon 79278172 79278817 4031 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 79278819 79279033 1347 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 79279034 79279412 2457 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr13 rmsk exon 79279413 79279821 2918 + . gene_id "HERVH_13q31.1a"; transcript_id "HERVH_13q31.1a"; locus "HERVH_13q31.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0995"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFRD_13q31.1 ### chr13 rmsk gene 79393292 79394632 . + . gene_id "HERVFRD_13q31.1"; transcript_id "HERVFRD_13q31.1"; locus "HERVFRD_13q31.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0141"; model_cov "1230"; model_pct "17.1"; chr13 rmsk exon 79393292 79393526 1340 + . gene_id "HERVFRD_13q31.1"; transcript_id "HERVFRD_13q31.1"; locus "HERVFRD_13q31.1"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0141"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "479"; chr13 rmsk exon 79393528 79394632 6021 + . gene_id "HERVFRD_13q31.1"; transcript_id "HERVFRD_13q31.1"; locus "HERVFRD_13q31.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0141"; repClass "LTR"; repEnd "1231"; repFamily "ERV1"; repLeft "-5974"; repStart "1"; ### ERV316A3_13q31.1b ### chr13 rmsk gene 79824676 79830995 . + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2215"; model_cov "3672"; model_pct "70.3"; chr13 rmsk exon 79824676 79824851 708 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "255"; chr13 rmsk exon 79824864 79825611 1179 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "966"; repFamily "ERVL"; repLeft "-4260"; repStart "243"; chr13 rmsk exon 79825723 79826030 713 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "-4007"; repStart "892"; chr13 rmsk exon 79826065 79827018 1526 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "2555"; repFamily "ERVL"; repLeft "-2671"; repStart "1508"; chr13 rmsk exon 79828957 79830520 3336 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "3605"; chr13 rmsk exon 79830578 79830995 1257 + . gene_id "ERV316A3_13q31.1b"; transcript_id "ERV316A3_13q31.1b"; locus "ERV316A3_13q31.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2215"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-17"; repStart "1"; ### ERVLE_13q31.1a ### chr13 rmsk gene 79837738 79839098 . - . gene_id "ERVLE_13q31.1a"; transcript_id "ERVLE_13q31.1a"; locus "ERVLE_13q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2894"; model_cov "667"; model_pct "11.8"; chr13 rmsk exon 79837738 79837898 309 - . gene_id "ERVLE_13q31.1a"; transcript_id "ERVLE_13q31.1a"; locus "ERVLE_13q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2894"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "4753"; repStart "-753"; chr13 rmsk exon 79838494 79838834 302 - . gene_id "ERVLE_13q31.1a"; transcript_id "ERVLE_13q31.1a"; locus "ERVLE_13q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2894"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "4007"; repStart "-1273"; chr13 rmsk exon 79838982 79839098 280 - . gene_id "ERVLE_13q31.1a"; transcript_id "ERVLE_13q31.1a"; locus "ERVLE_13q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2894"; repClass "LTR"; repEnd "3905"; repFamily "ERVL"; repLeft "3786"; repStart "-1762"; ### HERVL_13q31.1a ### chr13 rmsk gene 79856372 79860034 . + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1042"; model_cov "1701"; model_pct "30.1"; chr13 rmsk exon 79856372 79856533 542 + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1042"; repClass "LTR"; repEnd "167"; repFamily "ERVL"; repLeft "-387"; repStart "1"; chr13 rmsk exon 79856534 79857507 6243 + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1042"; repClass "LTR"; repEnd "4935"; repFamily "ERVL"; repLeft "-719"; repStart "3948"; chr13 rmsk exon 79858803 79859249 4259 + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1042"; repClass "LTR"; repEnd "5382"; repFamily "ERVL"; repLeft "-272"; repStart "4936"; chr13 rmsk exon 79859565 79859841 4259 + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1042"; repClass "LTR"; repEnd "5651"; repFamily "ERVL"; repLeft "-3"; repStart "5383"; chr13 rmsk exon 79859850 79860034 2122 + . gene_id "HERVL_13q31.1a"; transcript_id "HERVL_13q31.1a"; locus "HERVL_13q31.1a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1042"; repClass "LTR"; repEnd "187"; repFamily "ERVL"; repLeft "-367"; repStart "2"; ### HERVL_13q31.1b ### chr13 rmsk gene 80061803 80065418 . - . gene_id "HERVL_13q31.1b"; transcript_id "HERVL_13q31.1b"; locus "HERVL_13q31.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1043"; model_cov "3062"; model_pct "54.2"; chr13 rmsk exon 80061803 80061851 3096 - . gene_id "HERVL_13q31.1b"; transcript_id "HERVL_13q31.1b"; locus "HERVL_13q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1043"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "388"; repStart "0"; chr13 rmsk exon 80061902 80062282 3096 - . gene_id "HERVL_13q31.1b"; transcript_id "HERVL_13q31.1b"; locus "HERVL_13q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1043"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "2"; repStart "-57"; chr13 rmsk exon 80062283 80065337 23312 - . gene_id "HERVL_13q31.1b"; transcript_id "HERVL_13q31.1b"; locus "HERVL_13q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1043"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2592"; repStart "0"; chr13 rmsk exon 80065341 80065418 421 - . gene_id "HERVL_13q31.1b"; transcript_id "HERVL_13q31.1b"; locus "HERVL_13q31.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1043"; repClass "LTR"; repEnd "84"; repFamily "ERVL"; repLeft "1"; repStart "-360"; ### HERVH_13q31.1b ### chr13 rmsk gene 80183511 80189979 . + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0996"; model_cov "5767"; model_pct "74.8"; chr13 rmsk exon 80183511 80183959 3702 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 80183962 80187222 18595 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "1"; chr13 rmsk exon 80187215 80188939 7789 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4551"; chr13 rmsk exon 80188941 80189152 1248 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 80189153 80189531 2448 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr13 rmsk exon 80189532 80189979 3573 + . gene_id "HERVH_13q31.1b"; transcript_id "HERVH_13q31.1b"; locus "HERVH_13q31.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0996"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML6_13q31.1 ### chr13 rmsk gene 80397537 80400338 . + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0068"; model_cov "1350"; model_pct "18.7"; chr13 rmsk exon 80397537 80397967 3228 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr13 rmsk exon 80398079 80398278 765 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr13 rmsk exon 80398336 80398439 434 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "-6563"; repStart "539"; chr13 rmsk exon 80398428 80399398 5404 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-4934"; repStart "1280"; chr13 rmsk exon 80399398 80399434 573 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "2999"; repFamily "ERVK"; repLeft "-4203"; repStart "2954"; chr13 rmsk exon 80399917 80400338 3075 + . gene_id "HML6_13q31.1"; transcript_id "HML6_13q31.1"; locus "HML6_13q31.1"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0068"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_13q31.1a ### chr13 rmsk gene 80485262 80488518 . + . gene_id "ERVLB4_13q31.1a"; transcript_id "ERVLB4_13q31.1a"; locus "ERVLB4_13q31.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1384"; model_cov "3300"; model_pct "57.8"; chr13 rmsk exon 80485262 80487172 2184 + . gene_id "ERVLB4_13q31.1a"; transcript_id "ERVLB4_13q31.1a"; locus "ERVLB4_13q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1384"; repClass "LTR"; repEnd "3750"; repFamily "ERVL"; repLeft "-1964"; repStart "1786"; chr13 rmsk exon 80487235 80487890 1441 + . gene_id "ERVLB4_13q31.1a"; transcript_id "ERVLB4_13q31.1a"; locus "ERVLB4_13q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1384"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "-1141"; repStart "3879"; chr13 rmsk exon 80487929 80488518 671 + . gene_id "ERVLB4_13q31.1a"; transcript_id "ERVLB4_13q31.1a"; locus "ERVLB4_13q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1384"; repClass "LTR"; repEnd "5320"; repFamily "ERVL"; repLeft "-394"; repStart "4678"; ### ERVLE_13q31.1b ### chr13 rmsk gene 80643626 80645144 . - . gene_id "ERVLE_13q31.1b"; transcript_id "ERVLE_13q31.1b"; locus "ERVLE_13q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2895"; model_cov "1384"; model_pct "24.4"; chr13 rmsk exon 80643626 80643886 451 - . gene_id "ERVLE_13q31.1b"; transcript_id "ERVLE_13q31.1b"; locus "ERVLE_13q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2895"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "4720"; repStart "-737"; chr13 rmsk exon 80643894 80644060 423 - . gene_id "ERVLE_13q31.1b"; transcript_id "ERVLE_13q31.1b"; locus "ERVLE_13q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2895"; repClass "LTR"; repEnd "4685"; repFamily "ERVL"; repLeft "4511"; repStart "-982"; chr13 rmsk exon 80644142 80644880 2163 - . gene_id "ERVLE_13q31.1b"; transcript_id "ERVLE_13q31.1b"; locus "ERVLE_13q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2895"; repClass "LTR"; repEnd "4365"; repFamily "ERVL"; repLeft "3602"; repStart "-1302"; chr13 rmsk exon 80644911 80645144 979 - . gene_id "ERVLE_13q31.1b"; transcript_id "ERVLE_13q31.1b"; locus "ERVLE_13q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2895"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "3289"; repStart "-2141"; ### ERVLE_13q31.1c ### chr13 rmsk gene 81139782 81143032 . + . gene_id "ERVLE_13q31.1c"; transcript_id "ERVLE_13q31.1c"; locus "ERVLE_13q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2897"; model_cov "1391"; model_pct "24.5"; chr13 rmsk exon 81139782 81140538 1275 + . gene_id "ERVLE_13q31.1c"; transcript_id "ERVLE_13q31.1c"; locus "ERVLE_13q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2897"; repClass "LTR"; repEnd "1647"; repFamily "ERVL"; repLeft "-4020"; repStart "877"; chr13 rmsk exon 81141449 81141853 1111 + . gene_id "ERVLE_13q31.1c"; transcript_id "ERVLE_13q31.1c"; locus "ERVLE_13q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2897"; repClass "LTR"; repEnd "2490"; repFamily "ERVL"; repLeft "-3177"; repStart "2079"; chr13 rmsk exon 81142826 81143032 544 + . gene_id "ERVLE_13q31.1c"; transcript_id "ERVLE_13q31.1c"; locus "ERVLE_13q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2897"; repClass "LTR"; repEnd "2732"; repFamily "ERVL"; repLeft "-2935"; repStart "2522"; ### ERVLB4_13q31.1b ### chr13 rmsk gene 81203242 81203967 . + . gene_id "ERVLB4_13q31.1b"; transcript_id "ERVLB4_13q31.1b"; locus "ERVLB4_13q31.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1387"; model_cov "721"; model_pct "12.6"; chr13 rmsk exon 81203242 81203967 892 + . gene_id "ERVLB4_13q31.1b"; transcript_id "ERVLB4_13q31.1b"; locus "ERVLB4_13q31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1387"; repClass "LTR"; repEnd "2656"; repFamily "ERVL"; repLeft "-3058"; repStart "1935"; ### ERVLE_13q31.1d ### chr13 rmsk gene 81369323 81371357 . - . gene_id "ERVLE_13q31.1d"; transcript_id "ERVLE_13q31.1d"; locus "ERVLE_13q31.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2899"; model_cov "2053"; model_pct "36.2"; chr13 rmsk exon 81369323 81371357 6311 - . gene_id "ERVLE_13q31.1d"; transcript_id "ERVLE_13q31.1d"; locus "ERVLE_13q31.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2899"; repClass "LTR"; repEnd "2058"; repFamily "ERVL"; repLeft "5"; repStart "-3609"; ### HUERSP3B_13q31.1 ### chr13 rmsk gene 81515693 81522800 . - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0113"; model_cov "5054"; model_pct "68.1"; chr13 rmsk exon 81515693 81515949 3538 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "561"; repFamily "ERV1"; repLeft "318"; repStart "-83"; chr13 rmsk exon 81516246 81516547 3538 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "1"; repStart "-327"; chr13 rmsk exon 81516549 81518336 16221 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "5641"; repStart "-7"; chr13 rmsk exon 81518641 81519564 16221 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "5640"; repFamily "ERV1"; repLeft "4719"; repStart "-1778"; chr13 rmsk exon 81519875 81519940 1026 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "3723"; repStart "-3639"; chr13 rmsk exon 81519944 81520472 3649 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "3591"; repFamily "ERV1"; repLeft "3073"; repStart "-3827"; chr13 rmsk exon 81520864 81520954 676 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "2655"; repFamily "ERV1"; repLeft "2565"; repStart "-4763"; chr13 rmsk exon 81520952 81522271 4981 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "2292"; repFamily "ERV1"; repLeft "902"; repStart "-5126"; chr13 rmsk exon 81522284 81522350 318 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "811"; repFamily "ERV1"; repLeft "747"; repStart "-6607"; chr13 rmsk exon 81522357 81522501 807 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "409"; repStart "-6859"; chr13 rmsk exon 81522505 81522600 335 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "1"; repStart "-7322"; chr13 rmsk exon 81522601 81522800 1403 - . gene_id "HUERSP3B_13q31.1"; transcript_id "HUERSP3B_13q31.1"; locus "HUERSP3B_13q31.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0113"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "445"; repStart "0"; ### ERVLE_13q31.1e ### chr13 rmsk gene 81597770 81600230 . + . gene_id "ERVLE_13q31.1e"; transcript_id "ERVLE_13q31.1e"; locus "ERVLE_13q31.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2901"; model_cov "1841"; model_pct "32.5"; chr13 rmsk exon 81597770 81598070 500 + . gene_id "ERVLE_13q31.1e"; transcript_id "ERVLE_13q31.1e"; locus "ERVLE_13q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2901"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "-2401"; repStart "2965"; chr13 rmsk exon 81598742 81599568 945 + . gene_id "ERVLE_13q31.1e"; transcript_id "ERVLE_13q31.1e"; locus "ERVLE_13q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2901"; repClass "LTR"; repEnd "4489"; repFamily "ERVL"; repLeft "-1178"; repStart "3616"; chr13 rmsk exon 81599619 81600230 424 + . gene_id "ERVLE_13q31.1e"; transcript_id "ERVLE_13q31.1e"; locus "ERVLE_13q31.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2901"; repClass "LTR"; repEnd "5353"; repFamily "ERVL"; repLeft "-314"; repStart "4686"; ### ERVLB4_13q31.1c ### chr13 rmsk gene 81636082 81639297 . - . gene_id "ERVLB4_13q31.1c"; transcript_id "ERVLB4_13q31.1c"; locus "ERVLB4_13q31.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1388"; model_cov "3209"; model_pct "56.2"; chr13 rmsk exon 81636082 81636933 2375 - . gene_id "ERVLB4_13q31.1c"; transcript_id "ERVLB4_13q31.1c"; locus "ERVLB4_13q31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1388"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "3535"; repStart "-1312"; chr13 rmsk exon 81636941 81637141 782 - . gene_id "ERVLB4_13q31.1c"; transcript_id "ERVLB4_13q31.1c"; locus "ERVLB4_13q31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1388"; repClass "LTR"; repEnd "3162"; repFamily "ERVL"; repLeft "2950"; repStart "-2552"; chr13 rmsk exon 81637213 81639297 4395 - . gene_id "ERVLB4_13q31.1c"; transcript_id "ERVLB4_13q31.1c"; locus "ERVLB4_13q31.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1388"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "705"; repStart "-2879"; ### HERVL40_13q31.1a ### chr13 rmsk gene 81779989 81783754 . - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0352"; model_cov "1232"; model_pct "22.3"; chr13 rmsk exon 81779989 81780395 378 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "-118"; repStart "-33"; chr13 rmsk exon 81780402 81780682 755 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "5521"; repFamily "ERVL"; repLeft "5236"; repStart "-9"; chr13 rmsk exon 81781278 81781570 947 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "3123"; repStart "-2118"; chr13 rmsk exon 81781562 81782039 1643 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "3186"; repFamily "ERVL"; repLeft "2720"; repStart "-2344"; chr13 rmsk exon 81782635 81782781 372 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "715"; repFamily "ERVL"; repLeft "568"; repStart "-4815"; chr13 rmsk exon 81783303 81783347 258 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "9"; repStart "-5476"; chr13 rmsk exon 81783348 81783754 603 - . gene_id "HERVL40_13q31.1a"; transcript_id "HERVL40_13q31.1a"; locus "HERVL40_13q31.1a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0352"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "4"; repStart "-4"; ### HERVH_13q31.1c ### chr13 rmsk gene 81866095 81872431 . + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0997"; model_cov "5751"; model_pct "74.6"; chr13 rmsk exon 81866095 81866504 2901 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 81866507 81869726 19838 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr13 rmsk exon 81869717 81871439 8137 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr13 rmsk exon 81871441 81871656 1383 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 81871655 81872010 1916 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "7679"; repFamily "ERV1"; repLeft "-34"; repStart "7322"; chr13 rmsk exon 81872023 81872431 2751 + . gene_id "HERVH_13q31.1c"; transcript_id "HERVH_13q31.1c"; locus "HERVH_13q31.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0997"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_13q31.1f ### chr13 rmsk gene 81877945 81880396 . + . gene_id "ERVLE_13q31.1f"; transcript_id "ERVLE_13q31.1f"; locus "ERVLE_13q31.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2902"; model_cov "1647"; model_pct "29.1"; chr13 rmsk exon 81877945 81879104 1560 + . gene_id "ERVLE_13q31.1f"; transcript_id "ERVLE_13q31.1f"; locus "ERVLE_13q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2902"; repClass "LTR"; repEnd "3173"; repFamily "ERVL"; repLeft "-2494"; repStart "2014"; chr13 rmsk exon 81879662 81879860 1560 + . gene_id "ERVLE_13q31.1f"; transcript_id "ERVLE_13q31.1f"; locus "ERVLE_13q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2902"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-2303"; repStart "3174"; chr13 rmsk exon 81880111 81880396 341 + . gene_id "ERVLE_13q31.1f"; transcript_id "ERVLE_13q31.1f"; locus "ERVLE_13q31.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2902"; repClass "LTR"; repEnd "4891"; repFamily "ERVL"; repLeft "-776"; repStart "4593"; ### HERVL40_13q31.1b ### chr13 rmsk gene 81937664 81940708 . + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0353"; model_cov "1460"; model_pct "26.4"; chr13 rmsk exon 81937664 81938123 497 + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0353"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr13 rmsk exon 81938132 81938239 298 + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0353"; repClass "LTR"; repEnd "120"; repFamily "ERVL"; repLeft "-5410"; repStart "10"; chr13 rmsk exon 81939366 81939766 885 + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0353"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1206"; chr13 rmsk exon 81939766 81940107 778 + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0353"; repClass "LTR"; repEnd "2391"; repFamily "ERVL"; repLeft "-3139"; repStart "2050"; chr13 rmsk exon 81940108 81940708 1299 + . gene_id "HERVL40_13q31.1b"; transcript_id "HERVL40_13q31.1b"; locus "HERVL40_13q31.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0353"; repClass "LTR"; repEnd "3155"; repFamily "ERVL"; repLeft "-2375"; repStart "2557"; ### MER61_13q31.1a ### chr13 rmsk gene 82037819 82041434 . - . gene_id "MER61_13q31.1a"; transcript_id "MER61_13q31.1a"; locus "MER61_13q31.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0306"; model_cov "3009"; model_pct "57.7"; chr13 rmsk exon 82037819 82038148 1772 - . gene_id "MER61_13q31.1a"; transcript_id "MER61_13q31.1a"; locus "MER61_13q31.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0306"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 82038149 82039179 20939 - . gene_id "MER61_13q31.1a"; transcript_id "MER61_13q31.1a"; locus "MER61_13q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0306"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4156"; repStart "0"; chr13 rmsk exon 82039489 82041434 20939 - . gene_id "MER61_13q31.1a"; transcript_id "MER61_13q31.1a"; locus "MER61_13q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0306"; repClass "LTR"; repEnd "4155"; repFamily "ERV1"; repLeft "2207"; repStart "-1062"; ### ERVLB4_13q31.1d ### chr13 rmsk gene 82136821 82138405 . + . gene_id "ERVLB4_13q31.1d"; transcript_id "ERVLB4_13q31.1d"; locus "ERVLB4_13q31.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1389"; model_cov "1232"; model_pct "21.6"; chr13 rmsk exon 82136821 82138048 6428 + . gene_id "ERVLB4_13q31.1d"; transcript_id "ERVLB4_13q31.1d"; locus "ERVLB4_13q31.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1389"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4480"; chr13 rmsk exon 82138051 82138405 1058 + . gene_id "ERVLB4_13q31.1d"; transcript_id "ERVLB4_13q31.1d"; locus "ERVLB4_13q31.1d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1389"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "119"; ### HUERSP3_13q31.1 ### chr13 rmsk gene 82322862 82331669 . + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0164"; model_cov "7156"; model_pct "80.2"; chr13 rmsk exon 82322862 82323531 3553 + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0164"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 82323544 82324216 40863 + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0164"; repClass "LTR"; repEnd "743"; repFamily "ERV1"; repLeft "-8176"; repStart "10"; chr13 rmsk exon 82324519 82330593 40863 + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0164"; repClass "LTR"; repEnd "6911"; repFamily "ERV1"; repLeft "-2008"; repStart "744"; chr13 rmsk exon 82330812 82331065 1372 + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0164"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "-4"; repStart "8659"; chr13 rmsk exon 82331070 82331669 3911 + . gene_id "HUERSP3_13q31.1"; transcript_id "HUERSP3_13q31.1"; locus "HUERSP3_13q31.1"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0164"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-93"; repStart "1"; ### ERVLB4_13q31.1e ### chr13 rmsk gene 82370290 82373131 . - . gene_id "ERVLB4_13q31.1e"; transcript_id "ERVLB4_13q31.1e"; locus "ERVLB4_13q31.1e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1390"; model_cov "701"; model_pct "12.3"; chr13 rmsk exon 82370290 82370629 1238 - . gene_id "ERVLB4_13q31.1e"; transcript_id "ERVLB4_13q31.1e"; locus "ERVLB4_13q31.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1390"; repClass "LTR"; repEnd "734"; repFamily "ERVL"; repLeft "398"; repStart "-4980"; chr13 rmsk exon 82372390 82372714 1417 - . gene_id "ERVLB4_13q31.1e"; transcript_id "ERVLB4_13q31.1e"; locus "ERVLB4_13q31.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1390"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "32"; repStart "-5347"; chr13 rmsk exon 82373032 82373068 1417 - . gene_id "ERVLB4_13q31.1e"; transcript_id "ERVLB4_13q31.1e"; locus "ERVLB4_13q31.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1390"; repClass "LTR"; repEnd "31"; repFamily "ERVL"; repLeft "1"; repStart "-5683"; chr13 rmsk exon 82373071 82373131 340 - . gene_id "ERVLB4_13q31.1e"; transcript_id "ERVLB4_13q31.1e"; locus "ERVLB4_13q31.1e"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1390"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "450"; repStart "-5"; ### MER4_13q31.1a ### chr13 rmsk gene 82370632 82372359 . + . gene_id "MER4_13q31.1a"; transcript_id "MER4_13q31.1a"; locus "MER4_13q31.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0628"; model_cov "1120"; model_pct "17.0"; chr13 rmsk exon 82370632 82371071 2827 + . gene_id "MER4_13q31.1a"; transcript_id "MER4_13q31.1a"; locus "MER4_13q31.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0628"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 82371075 82371726 2522 + . gene_id "MER4_13q31.1a"; transcript_id "MER4_13q31.1a"; locus "MER4_13q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0628"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-5758"; repStart "1"; chr13 rmsk exon 82371775 82372047 1106 + . gene_id "MER4_13q31.1a"; transcript_id "MER4_13q31.1a"; locus "MER4_13q31.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0628"; repClass "LTR"; repEnd "2399"; repFamily "ERV1"; repLeft "-4199"; repStart "2118"; chr13 rmsk exon 82372054 82372359 2077 + . gene_id "MER4_13q31.1a"; transcript_id "MER4_13q31.1a"; locus "MER4_13q31.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0628"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "144"; ### HERVL_13q31.1c ### chr13 rmsk gene 82386829 82388794 . - . gene_id "HERVL_13q31.1c"; transcript_id "HERVL_13q31.1c"; locus "HERVL_13q31.1c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1045"; model_cov "1964"; model_pct "34.7"; chr13 rmsk exon 82386829 82387203 2959 - . gene_id "HERVL_13q31.1c"; transcript_id "HERVL_13q31.1c"; locus "HERVL_13q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1045"; repClass "LTR"; repEnd "4368"; repFamily "ERVL"; repLeft "3991"; repStart "-1286"; chr13 rmsk exon 82387203 82388794 12124 - . gene_id "HERVL_13q31.1c"; transcript_id "HERVL_13q31.1c"; locus "HERVL_13q31.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1045"; repClass "LTR"; repEnd "1912"; repFamily "ERVL"; repLeft "325"; repStart "-3742"; ### HERVW_13q31.1 ### chr13 rmsk gene 82457554 82460573 . + . gene_id "HERVW_13q31.1"; transcript_id "HERVW_13q31.1"; locus "HERVW_13q31.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0245"; model_cov "2617"; model_pct "30.3"; chr13 rmsk exon 82457554 82458088 4030 + . gene_id "HERVW_13q31.1"; transcript_id "HERVW_13q31.1"; locus "HERVW_13q31.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0245"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr13 rmsk exon 82458089 82459817 6395 + . gene_id "HERVW_13q31.1"; transcript_id "HERVW_13q31.1"; locus "HERVW_13q31.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0245"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "-6762"; repStart "1"; chr13 rmsk exon 82459817 82460573 5967 + . gene_id "HERVW_13q31.1"; transcript_id "HERVW_13q31.1"; locus "HERVW_13q31.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0245"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-6191"; repStart "1681"; ### MER61_13q31.1b ### chr13 rmsk gene 82567682 82569219 . - . gene_id "MER61_13q31.1b"; transcript_id "MER61_13q31.1b"; locus "MER61_13q31.1b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0307"; model_cov "996"; model_pct "19.1"; chr13 rmsk exon 82567682 82568444 6170 - . gene_id "MER61_13q31.1b"; transcript_id "MER61_13q31.1b"; locus "MER61_13q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0307"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "3515"; repStart "-1226"; chr13 rmsk exon 82568709 82569219 6170 - . gene_id "MER61_13q31.1b"; transcript_id "MER61_13q31.1b"; locus "MER61_13q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0307"; repClass "LTR"; repEnd "3514"; repFamily "ERV1"; repLeft "2994"; repStart "-1703"; ### ERV316A3_13q31.1c ### chr13 rmsk gene 82610745 82611856 . + . gene_id "ERV316A3_13q31.1c"; transcript_id "ERV316A3_13q31.1c"; locus "ERV316A3_13q31.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2219"; model_cov "901"; model_pct "17.2"; chr13 rmsk exon 82610745 82611146 333 + . gene_id "ERV316A3_13q31.1c"; transcript_id "ERV316A3_13q31.1c"; locus "ERV316A3_13q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2219"; repClass "LTR"; repEnd "3016"; repFamily "ERVL"; repLeft "-2210"; repStart "2616"; chr13 rmsk exon 82611373 82611856 880 + . gene_id "ERV316A3_13q31.1c"; transcript_id "ERV316A3_13q31.1c"; locus "ERV316A3_13q31.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2219"; repClass "LTR"; repEnd "4084"; repFamily "ERVL"; repLeft "-1142"; repStart "3583"; ### ERVL_13q31.1a ### chr13 rmsk gene 82795983 82799072 . + . gene_id "ERVL_13q31.1a"; transcript_id "ERVL_13q31.1a"; locus "ERVL_13q31.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0353"; model_cov "2141"; model_pct "37.2"; chr13 rmsk exon 82795983 82796450 2051 + . gene_id "ERVL_13q31.1a"; transcript_id "ERVL_13q31.1a"; locus "ERVL_13q31.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0353"; repClass "LTR"; repEnd "3780"; repFamily "ERVL"; repLeft "-1977"; repStart "3321"; chr13 rmsk exon 82796435 82796965 8331 + . gene_id "ERVL_13q31.1a"; transcript_id "ERVL_13q31.1a"; locus "ERVL_13q31.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0353"; repClass "LTR"; repEnd "4380"; repFamily "ERVL"; repLeft "-1377"; repStart "3843"; chr13 rmsk exon 82797495 82798197 8331 + . gene_id "ERVL_13q31.1a"; transcript_id "ERVL_13q31.1a"; locus "ERVL_13q31.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0353"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "-677"; repStart "4381"; chr13 rmsk exon 82798613 82799072 8331 + . gene_id "ERVL_13q31.1a"; transcript_id "ERVL_13q31.1a"; locus "ERVL_13q31.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0353"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "-230"; repStart "5081"; ### ERVLE_13q31.1g ### chr13 rmsk gene 82905779 82908466 . - . gene_id "ERVLE_13q31.1g"; transcript_id "ERVLE_13q31.1g"; locus "ERVLE_13q31.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2904"; model_cov "1984"; model_pct "35.0"; chr13 rmsk exon 82905779 82906906 2990 - . gene_id "ERVLE_13q31.1g"; transcript_id "ERVLE_13q31.1g"; locus "ERVLE_13q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2904"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "3493"; repStart "-998"; chr13 rmsk exon 82907065 82907585 981 - . gene_id "ERVLE_13q31.1g"; transcript_id "ERVLE_13q31.1g"; locus "ERVLE_13q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2904"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "2706"; repStart "-2377"; chr13 rmsk exon 82908252 82908466 672 - . gene_id "ERVLE_13q31.1g"; transcript_id "ERVLE_13q31.1g"; locus "ERVLE_13q31.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2904"; repClass "LTR"; repEnd "2713"; repFamily "ERVL"; repLeft "2489"; repStart "-2954"; ### ERV316A3_13q31.1d ### chr13 rmsk gene 82916478 82919887 . - . gene_id "ERV316A3_13q31.1d"; transcript_id "ERV316A3_13q31.1d"; locus "ERV316A3_13q31.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2220"; model_cov "1834"; model_pct "35.1"; chr13 rmsk exon 82916478 82916495 1745 - . gene_id "ERV316A3_13q31.1d"; transcript_id "ERV316A3_13q31.1d"; locus "ERV316A3_13q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2220"; repClass "LTR"; repEnd "2692"; repFamily "ERVL"; repLeft "2680"; repStart "-2534"; chr13 rmsk exon 82916894 82917080 1745 - . gene_id "ERV316A3_13q31.1d"; transcript_id "ERV316A3_13q31.1d"; locus "ERV316A3_13q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2220"; repClass "LTR"; repEnd "2679"; repFamily "ERVL"; repLeft "2501"; repStart "-2547"; chr13 rmsk exon 82918260 82919887 1745 - . gene_id "ERV316A3_13q31.1d"; transcript_id "ERV316A3_13q31.1d"; locus "ERV316A3_13q31.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2220"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "856"; repStart "-2726"; ### HERVL_13q31.1d ### chr13 rmsk gene 82970272 82974475 . - . gene_id "HERVL_13q31.1d"; transcript_id "HERVL_13q31.1d"; locus "HERVL_13q31.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1047"; model_cov "3987"; model_pct "70.5"; chr13 rmsk exon 82970272 82970285 2630 - . gene_id "HERVL_13q31.1d"; transcript_id "HERVL_13q31.1d"; locus "HERVL_13q31.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1047"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "392"; repStart "-40"; chr13 rmsk exon 82970311 82970689 2630 - . gene_id "HERVL_13q31.1d"; transcript_id "HERVL_13q31.1d"; locus "HERVL_13q31.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1047"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "1"; repStart "-53"; chr13 rmsk exon 82970690 82974475 18532 - . gene_id "HERVL_13q31.1d"; transcript_id "HERVL_13q31.1d"; locus "HERVL_13q31.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1047"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1667"; repStart "0"; ### ERVLE_13q31.1h ### chr13 rmsk gene 82980197 82981001 . + . gene_id "ERVLE_13q31.1h"; transcript_id "ERVLE_13q31.1h"; locus "ERVLE_13q31.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2905"; model_cov "799"; model_pct "14.1"; chr13 rmsk exon 82980197 82981001 1243 + . gene_id "ERVLE_13q31.1h"; transcript_id "ERVLE_13q31.1h"; locus "ERVLE_13q31.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2905"; repClass "LTR"; repEnd "1727"; repFamily "ERVL"; repLeft "-3940"; repStart "928"; ### ERVLE_13q31.1i ### chr13 rmsk gene 82982378 82984633 . - . gene_id "ERVLE_13q31.1i"; transcript_id "ERVLE_13q31.1i"; locus "ERVLE_13q31.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2906"; model_cov "1882"; model_pct "33.2"; chr13 rmsk exon 82982378 82983330 4696 - . gene_id "ERVLE_13q31.1i"; transcript_id "ERVLE_13q31.1i"; locus "ERVLE_13q31.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2906"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4356"; repStart "-370"; chr13 rmsk exon 82983705 82984633 4696 - . gene_id "ERVLE_13q31.1i"; transcript_id "ERVLE_13q31.1i"; locus "ERVLE_13q31.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2906"; repClass "LTR"; repEnd "4355"; repFamily "ERVL"; repLeft "3414"; repStart "-1312"; ### ERVLB4_13q31.1f ### chr13 rmsk gene 83015573 83019637 . - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1392"; model_cov "2940"; model_pct "51.5"; chr13 rmsk exon 83015573 83015789 493 - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1392"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "27"; repStart "-10"; chr13 rmsk exon 83016264 83016445 824 - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1392"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "1"; repStart "-208"; chr13 rmsk exon 83016446 83016670 1246 - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1392"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5489"; repStart "-1"; chr13 rmsk exon 83016721 83019129 10656 - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1392"; repClass "LTR"; repEnd "5378"; repFamily "ERVL"; repLeft "2923"; repStart "-336"; chr13 rmsk exon 83019379 83019637 7263 - . gene_id "ERVLB4_13q31.1f"; transcript_id "ERVLB4_13q31.1f"; locus "ERVLB4_13q31.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1392"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "2675"; repStart "-2778"; ### ERVLB4_13q31.1g ### chr13 rmsk gene 83019706 83022609 . - . gene_id "ERVLB4_13q31.1g"; transcript_id "ERVLB4_13q31.1g"; locus "ERVLB4_13q31.1g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1393"; model_cov "2672"; model_pct "46.8"; chr13 rmsk exon 83019706 83021138 7263 - . gene_id "ERVLB4_13q31.1g"; transcript_id "ERVLB4_13q31.1g"; locus "ERVLB4_13q31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1393"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "1486"; repStart "-2778"; chr13 rmsk exon 83021525 83022609 7263 - . gene_id "ERVLB4_13q31.1g"; transcript_id "ERVLB4_13q31.1g"; locus "ERVLB4_13q31.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1393"; repClass "LTR"; repEnd "1223"; repFamily "ERVL"; repLeft "1"; repStart "-4491"; ### MER4B_13q31.1 ### chr13 rmsk gene 83121432 83122274 . + . gene_id "MER4B_13q31.1"; transcript_id "MER4B_13q31.1"; locus "MER4B_13q31.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0349"; model_cov "872"; model_pct "12.9"; chr13 rmsk exon 83121432 83121872 2411 + . gene_id "MER4B_13q31.1"; transcript_id "MER4B_13q31.1"; locus "MER4B_13q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0349"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "-3185"; repStart "3083"; chr13 rmsk exon 83121933 83122274 2411 + . gene_id "MER4B_13q31.1"; transcript_id "MER4B_13q31.1"; locus "MER4B_13q31.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0349"; repClass "LTR"; repEnd "3956"; repFamily "ERV1"; repLeft "-2802"; repStart "3574"; ### HERVL40_13q31.1c ### chr13 rmsk gene 83228351 83233141 . + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0356"; model_cov "2612"; model_pct "47.2"; chr13 rmsk exon 83228351 83228477 677 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "LTR40A1"; geneRegion "ltr"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "-11"; repStart "444"; chr13 rmsk exon 83228548 83228671 328 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "-5300"; repStart "97"; chr13 rmsk exon 83229047 83229131 367 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "1357"; repFamily "ERVL"; repLeft "-4173"; repStart "1272"; chr13 rmsk exon 83230009 83231379 2271 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "4299"; repFamily "ERVL"; repLeft "-1231"; repStart "2769"; chr13 rmsk exon 83231379 83231842 416 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "4991"; repFamily "ERVL"; repLeft "-539"; repStart "4540"; chr13 rmsk exon 83231886 83232009 324 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-324"; repStart "5088"; chr13 rmsk exon 83232450 83232728 459 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5235"; chr13 rmsk exon 83232836 83233141 667 + . gene_id "HERVL40_13q31.1c"; transcript_id "HERVL40_13q31.1c"; locus "HERVL40_13q31.1c"; repName "LTR40A1"; geneRegion "ltr"; locid "HERVL40-int_0356"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-156"; repStart "148"; ### MER61_13q31.1c ### chr13 rmsk gene 83277163 83280344 . + . gene_id "MER61_13q31.1c"; transcript_id "MER61_13q31.1c"; locus "MER61_13q31.1c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0309"; model_cov "2166"; model_pct "41.5"; chr13 rmsk exon 83277163 83277215 2730 + . gene_id "MER61_13q31.1c"; transcript_id "MER61_13q31.1c"; locus "MER61_13q31.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0309"; repClass "LTR"; repEnd "-1131"; repFamily "ERV1"; repLeft "-6348"; repStart "-1177"; chr13 rmsk exon 83277295 83278024 3056 + . gene_id "MER61_13q31.1c"; transcript_id "MER61_13q31.1c"; locus "MER61_13q31.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0309"; repClass "LTR"; repEnd "4607"; repFamily "ERV1"; repLeft "-610"; repStart "4071"; chr13 rmsk exon 83278015 83279865 9915 + . gene_id "MER61_13q31.1c"; transcript_id "MER61_13q31.1c"; locus "MER61_13q31.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0309"; repClass "LTR"; repEnd "3990"; repFamily "ERV1"; repLeft "-1227"; repStart "2406"; chr13 rmsk exon 83279969 83280344 2226 + . gene_id "MER61_13q31.1c"; transcript_id "MER61_13q31.1c"; locus "MER61_13q31.1c"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0309"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "115"; ### ERVLE_13q31.1j ### chr13 rmsk gene 83382562 83383543 . + . gene_id "ERVLE_13q31.1j"; transcript_id "ERVLE_13q31.1j"; locus "ERVLE_13q31.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2908"; model_cov "809"; model_pct "14.3"; chr13 rmsk exon 83382562 83382744 566 + . gene_id "ERVLE_13q31.1j"; transcript_id "ERVLE_13q31.1j"; locus "ERVLE_13q31.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2908"; repClass "LTR"; repEnd "1583"; repFamily "ERVL"; repLeft "-4084"; repStart "1401"; chr13 rmsk exon 83382921 83383543 2576 + . gene_id "ERVLE_13q31.1j"; transcript_id "ERVLE_13q31.1j"; locus "ERVLE_13q31.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2908"; repClass "LTR"; repEnd "2767"; repFamily "ERVL"; repLeft "-2900"; repStart "2140"; ### HUERSP2_13q31.1a ### chr13 rmsk gene 83532682 83536048 . + . gene_id "HUERSP2_13q31.1a"; transcript_id "HUERSP2_13q31.1a"; locus "HUERSP2_13q31.1a"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0104"; model_cov "1714"; model_pct "55.5"; chr13 rmsk exon 83532682 83533462 4448 + . gene_id "HUERSP2_13q31.1a"; transcript_id "HUERSP2_13q31.1a"; locus "HUERSP2_13q31.1a"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0104"; repClass "LTR"; repEnd "793"; repFamily "ERV1"; repLeft "-44"; repStart "1"; chr13 rmsk exon 83533513 83535174 9297 + . gene_id "HUERSP2_13q31.1a"; transcript_id "HUERSP2_13q31.1a"; locus "HUERSP2_13q31.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0104"; repClass "LTR"; repEnd "2898"; repFamily "ERV1"; repLeft "-190"; repStart "1184"; chr13 rmsk exon 83535176 83536048 4561 + . gene_id "HUERSP2_13q31.1a"; transcript_id "HUERSP2_13q31.1a"; locus "HUERSP2_13q31.1a"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0104"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q31.1k ### chr13 rmsk gene 83608050 83608786 . + . gene_id "ERVLE_13q31.1k"; transcript_id "ERVLE_13q31.1k"; locus "ERVLE_13q31.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2909"; model_cov "739"; model_pct "13.0"; chr13 rmsk exon 83608050 83608786 1210 + . gene_id "ERVLE_13q31.1k"; transcript_id "ERVLE_13q31.1k"; locus "ERVLE_13q31.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2909"; repClass "LTR"; repEnd "2462"; repFamily "ERVL"; repLeft "-3205"; repStart "1723"; ### ERVLE_13q31.1l ### chr13 rmsk gene 83671566 83674145 . + . gene_id "ERVLE_13q31.1l"; transcript_id "ERVLE_13q31.1l"; locus "ERVLE_13q31.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2912"; model_cov "1756"; model_pct "31.0"; chr13 rmsk exon 83671566 83671881 695 + . gene_id "ERVLE_13q31.1l"; transcript_id "ERVLE_13q31.1l"; locus "ERVLE_13q31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2912"; repClass "LTR"; repEnd "2305"; repFamily "ERVL"; repLeft "-3362"; repStart "1980"; chr13 rmsk exon 83671875 83672981 1363 + . gene_id "ERVLE_13q31.1l"; transcript_id "ERVLE_13q31.1l"; locus "ERVLE_13q31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2912"; repClass "LTR"; repEnd "3939"; repFamily "ERVL"; repLeft "-1728"; repStart "2830"; chr13 rmsk exon 83673563 83673752 373 + . gene_id "ERVLE_13q31.1l"; transcript_id "ERVLE_13q31.1l"; locus "ERVLE_13q31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2912"; repClass "LTR"; repEnd "4872"; repFamily "ERVL"; repLeft "-795"; repStart "4672"; chr13 rmsk exon 83674037 83674145 373 + . gene_id "ERVLE_13q31.1l"; transcript_id "ERVLE_13q31.1l"; locus "ERVLE_13q31.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2912"; repClass "LTR"; repEnd "4995"; repFamily "ERVL"; repLeft "-672"; repStart "4873"; ### ERVLB4_13q31.1h ### chr13 rmsk gene 83683653 83685682 . + . gene_id "ERVLB4_13q31.1h"; transcript_id "ERVLB4_13q31.1h"; locus "ERVLB4_13q31.1h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1394"; model_cov "1891"; model_pct "33.1"; chr13 rmsk exon 83683653 83683813 512 + . gene_id "ERVLB4_13q31.1h"; transcript_id "ERVLB4_13q31.1h"; locus "ERVLB4_13q31.1h"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1394"; repClass "LTR"; repEnd "174"; repFamily "ERVL"; repLeft "-223"; repStart "18"; chr13 rmsk exon 83683817 83683948 623 + . gene_id "ERVLB4_13q31.1h"; transcript_id "ERVLB4_13q31.1h"; locus "ERVLB4_13q31.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1394"; repClass "LTR"; repEnd "930"; repFamily "ERVL"; repLeft "-4784"; repStart "798"; chr13 rmsk exon 83683952 83685489 5651 + . gene_id "ERVLB4_13q31.1h"; transcript_id "ERVLB4_13q31.1h"; locus "ERVLB4_13q31.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1394"; repClass "LTR"; repEnd "3357"; repFamily "ERVL"; repLeft "-2357"; repStart "1790"; chr13 rmsk exon 83685492 83685682 844 + . gene_id "ERVLB4_13q31.1h"; transcript_id "ERVLB4_13q31.1h"; locus "ERVLB4_13q31.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1394"; repClass "LTR"; repEnd "4168"; repFamily "ERVL"; repLeft "-1546"; repStart "3976"; ### ERVL_13q31.1b ### chr13 rmsk gene 83685673 83688411 . + . gene_id "ERVL_13q31.1b"; transcript_id "ERVL_13q31.1b"; locus "ERVL_13q31.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0354"; model_cov "2312"; model_pct "40.2"; chr13 rmsk exon 83685673 83686690 4171 + . gene_id "ERVL_13q31.1b"; transcript_id "ERVL_13q31.1b"; locus "ERVL_13q31.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0354"; repClass "LTR"; repEnd "4477"; repFamily "ERVL"; repLeft "-1280"; repStart "3421"; chr13 rmsk exon 83686882 83687619 4189 + . gene_id "ERVL_13q31.1b"; transcript_id "ERVL_13q31.1b"; locus "ERVL_13q31.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0354"; repClass "LTR"; repEnd "5269"; repFamily "ERVL"; repLeft "-488"; repStart "4499"; chr13 rmsk exon 83687927 83688411 4189 + . gene_id "ERVL_13q31.1b"; transcript_id "ERVL_13q31.1b"; locus "ERVL_13q31.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0354"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "5270"; ### ERVLE_13q31.1m ### chr13 rmsk gene 83709065 83710501 . + . gene_id "ERVLE_13q31.1m"; transcript_id "ERVLE_13q31.1m"; locus "ERVLE_13q31.1m"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2913"; model_cov "852"; model_pct "15.0"; chr13 rmsk exon 83709065 83709839 2017 + . gene_id "ERVLE_13q31.1m"; transcript_id "ERVLE_13q31.1m"; locus "ERVLE_13q31.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2913"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4815"; chr13 rmsk exon 83709842 83710501 1564 + . gene_id "ERVLE_13q31.1m"; transcript_id "ERVLE_13q31.1m"; locus "ERVLE_13q31.1m"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2913"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "-8"; repStart "3"; ### MER101_13q31.1a ### chr13 rmsk gene 83814710 83818136 . + . gene_id "MER101_13q31.1a"; transcript_id "MER101_13q31.1a"; locus "MER101_13q31.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0299"; model_cov "2176"; model_pct "32.8"; chr13 rmsk exon 83814710 83815112 1165 + . gene_id "MER101_13q31.1a"; transcript_id "MER101_13q31.1a"; locus "MER101_13q31.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0299"; repClass "LTR"; repEnd "313"; repFamily "ERV1"; repLeft "-132"; repStart "1"; chr13 rmsk exon 83815386 83815548 1165 + . gene_id "MER101_13q31.1a"; transcript_id "MER101_13q31.1a"; locus "MER101_13q31.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0299"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "314"; chr13 rmsk exon 83815556 83816138 1362 + . gene_id "MER101_13q31.1a"; transcript_id "MER101_13q31.1a"; locus "MER101_13q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0299"; repClass "LTR"; repEnd "2377"; repFamily "ERV1"; repLeft "-4262"; repStart "1779"; chr13 rmsk exon 83816672 83818136 3515 + . gene_id "MER101_13q31.1a"; transcript_id "MER101_13q31.1a"; locus "MER101_13q31.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0299"; repClass "LTR"; repEnd "4261"; repFamily "ERV1"; repLeft "-2378"; repStart "2683"; ### MER101_13q31.1b ### chr13 rmsk gene 83818671 83822925 . + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0301"; model_cov "3471"; model_pct "52.3"; chr13 rmsk exon 83818671 83819001 953 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0301"; repClass "LTR"; repEnd "2678"; repFamily "ERV1"; repLeft "-3961"; repStart "2379"; chr13 rmsk exon 83819226 83821331 4070 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0301"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-1237"; repStart "3061"; chr13 rmsk exon 83821333 83821536 1075 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0301"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "-777"; repStart "5658"; chr13 rmsk exon 83821546 83821752 1965 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0301"; repClass "LTR"; repEnd "6230"; repFamily "ERV1"; repLeft "-409"; repStart "6010"; chr13 rmsk exon 83822059 83822460 1965 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0301"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "6231"; chr13 rmsk exon 83822461 83822746 1534 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0301"; repClass "LTR"; repEnd "288"; repFamily "ERV1"; repLeft "-157"; repStart "1"; chr13 rmsk exon 83822796 83822925 368 + . gene_id "MER101_13q31.1b"; transcript_id "MER101_13q31.1b"; locus "MER101_13q31.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0301"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-9"; repStart "305"; ### HERVH_13q31.1d ### chr13 rmsk gene 83908301 83913838 . - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0998"; model_cov "4909"; model_pct "63.6"; chr13 rmsk exon 83908301 83908729 3309 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 83908730 83909109 2442 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 83909108 83909329 1331 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr13 rmsk exon 83909327 83909975 4205 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 83909978 83910480 3206 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 83910471 83910615 845 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3142"; repStart "-4423"; chr13 rmsk exon 83910612 83913410 16331 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr13 rmsk exon 83913413 83913838 3201 - . gene_id "HERVH_13q31.1d"; transcript_id "HERVH_13q31.1d"; locus "HERVH_13q31.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_0998"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_13q31.1d ### chr13 rmsk gene 83996062 84000931 . + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0310"; model_cov "4067"; model_pct "78.0"; chr13 rmsk exon 83996062 83996382 1529 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0310"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 83996383 83997056 2416 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0310"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "2"; chr13 rmsk exon 83997050 83997583 3476 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0310"; repClass "LTR"; repEnd "1917"; repFamily "ERV1"; repLeft "-3300"; repStart "1320"; chr13 rmsk exon 83997580 83999928 16536 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0310"; repClass "LTR"; repEnd "4820"; repFamily "ERV1"; repLeft "-397"; repStart "2477"; chr13 rmsk exon 84000236 84000607 2451 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0310"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4865"; chr13 rmsk exon 84000608 84000931 1770 + . gene_id "MER61_13q31.1d"; transcript_id "MER61_13q31.1d"; locus "MER61_13q31.1d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0310"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q31.1n ### chr13 rmsk gene 84136549 84137517 . - . gene_id "ERVLE_13q31.1n"; transcript_id "ERVLE_13q31.1n"; locus "ERVLE_13q31.1n"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2914"; model_cov "1127"; model_pct "19.9"; chr13 rmsk exon 84136549 84137517 1369 - . gene_id "ERVLE_13q31.1n"; transcript_id "ERVLE_13q31.1n"; locus "ERVLE_13q31.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2914"; repClass "LTR"; repEnd "5169"; repFamily "ERVL"; repLeft "4042"; repStart "-498"; ### HUERSP2_13q31.1b ### chr13 rmsk gene 84490508 84491365 . + . gene_id "HUERSP2_13q31.1b"; transcript_id "HUERSP2_13q31.1b"; locus "HUERSP2_13q31.1b"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0105"; model_cov "833"; model_pct "27.0"; chr13 rmsk exon 84490508 84491365 3540 + . gene_id "HUERSP2_13q31.1b"; transcript_id "HUERSP2_13q31.1b"; locus "HUERSP2_13q31.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0105"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-33"; repStart "2222"; ### ERVLE_13q31.1o ### chr13 rmsk gene 84737439 84742169 . + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2915"; model_cov "2972"; model_pct "52.4"; chr13 rmsk exon 84737439 84738281 759 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "1120"; repFamily "ERVL"; repLeft "-4547"; repStart "278"; chr13 rmsk exon 84738280 84738593 370 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "1508"; repFamily "ERVL"; repLeft "-4159"; repStart "1187"; chr13 rmsk exon 84738610 84738763 634 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "2368"; repFamily "ERVL"; repLeft "-3299"; repStart "2215"; chr13 rmsk exon 84739409 84739980 1367 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "3762"; repFamily "ERVL"; repLeft "-1905"; repStart "3160"; chr13 rmsk exon 84740041 84740146 1367 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "3860"; repFamily "ERVL"; repLeft "-1807"; repStart "3763"; chr13 rmsk exon 84740156 84740235 396 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "-1623"; repStart "3965"; chr13 rmsk exon 84740466 84740656 347 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "4214"; repFamily "ERVL"; repLeft "-1453"; repStart "4017"; chr13 rmsk exon 84740666 84740778 306 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "4445"; repFamily "ERVL"; repLeft "-1222"; repStart "4334"; chr13 rmsk exon 84740845 84741059 412 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "4704"; repFamily "ERVL"; repLeft "-963"; repStart "4492"; chr13 rmsk exon 84741835 84742169 642 + . gene_id "ERVLE_13q31.1o"; transcript_id "ERVLE_13q31.1o"; locus "ERVLE_13q31.1o"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2915"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-493"; repStart "4816"; ### HUERSP1_13q31.1a ### chr13 rmsk gene 84787554 84791884 . + . gene_id "HUERSP1_13q31.1a"; transcript_id "HUERSP1_13q31.1a"; locus "HUERSP1_13q31.1a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0160"; model_cov "1932"; model_pct "30.8"; chr13 rmsk exon 84787554 84787701 984 + . gene_id "HUERSP1_13q31.1a"; transcript_id "HUERSP1_13q31.1a"; locus "HUERSP1_13q31.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0160"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "540"; chr13 rmsk exon 84787702 84788927 7371 + . gene_id "HUERSP1_13q31.1a"; transcript_id "HUERSP1_13q31.1a"; locus "HUERSP1_13q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0160"; repClass "LTR"; repEnd "1250"; repFamily "ERV1"; repLeft "-5013"; repStart "1"; chr13 rmsk exon 84788959 84789106 7371 + . gene_id "HUERSP1_13q31.1a"; transcript_id "HUERSP1_13q31.1a"; locus "HUERSP1_13q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0160"; repClass "LTR"; repEnd "1389"; repFamily "ERV1"; repLeft "-4874"; repStart "1251"; chr13 rmsk exon 84791365 84791884 3148 + . gene_id "HUERSP1_13q31.1a"; transcript_id "HUERSP1_13q31.1a"; locus "HUERSP1_13q31.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0160"; repClass "LTR"; repEnd "1931"; repFamily "ERV1"; repLeft "-4332"; repStart "1386"; ### HUERSP1_13q31.1b ### chr13 rmsk gene 84791931 84795863 . + . gene_id "HUERSP1_13q31.1b"; transcript_id "HUERSP1_13q31.1b"; locus "HUERSP1_13q31.1b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0161"; model_cov "3839"; model_pct "61.3"; chr13 rmsk exon 84791931 84792484 2928 + . gene_id "HUERSP1_13q31.1b"; transcript_id "HUERSP1_13q31.1b"; locus "HUERSP1_13q31.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0161"; repClass "LTR"; repEnd "1904"; repFamily "ERV1"; repLeft "-4359"; repStart "1302"; chr13 rmsk exon 84792487 84795254 8592 + . gene_id "HUERSP1_13q31.1b"; transcript_id "HUERSP1_13q31.1b"; locus "HUERSP1_13q31.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0161"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "3026"; chr13 rmsk exon 84795255 84795863 3705 + . gene_id "HUERSP1_13q31.1b"; transcript_id "HUERSP1_13q31.1b"; locus "HUERSP1_13q31.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0161"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "-107"; repStart "1"; ### MER4_13q31.1b ### chr13 rmsk gene 84867217 84869528 . - . gene_id "MER4_13q31.1b"; transcript_id "MER4_13q31.1b"; locus "MER4_13q31.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0629"; model_cov "1840"; model_pct "27.9"; chr13 rmsk exon 84867217 84867652 2937 - . gene_id "MER4_13q31.1b"; transcript_id "MER4_13q31.1b"; locus "MER4_13q31.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0629"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr13 rmsk exon 84867663 84868355 7686 - . gene_id "MER4_13q31.1b"; transcript_id "MER4_13q31.1b"; locus "MER4_13q31.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0629"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5889"; repStart "-2"; chr13 rmsk exon 84868406 84869528 7686 - . gene_id "MER4_13q31.1b"; transcript_id "MER4_13q31.1b"; locus "MER4_13q31.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0629"; repClass "LTR"; repEnd "5888"; repFamily "ERV1"; repLeft "4755"; repStart "-710"; ### HERVK14C_13q31.1 ### chr13 rmsk gene 84869543 84877320 . + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0022"; model_cov "7001"; model_pct "94.2"; chr13 rmsk exon 84869543 84869736 1433 + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0022"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "390"; chr13 rmsk exon 84869737 84871933 17836 + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0022"; repClass "LTR"; repEnd "2202"; repFamily "ERVK"; repLeft "-5232"; repStart "1"; chr13 rmsk exon 84871940 84873636 35931 + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0022"; repClass "LTR"; repEnd "4377"; repFamily "ERVK"; repLeft "-3057"; repStart "2633"; chr13 rmsk exon 84873737 84876707 35931 + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0022"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "4378"; chr13 rmsk exon 84876737 84877320 4719 + . gene_id "HERVK14C_13q31.1"; transcript_id "HERVK14C_13q31.1"; locus "HERVK14C_13q31.1"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0022"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_13q31.1c ### chr13 rmsk gene 84877321 84879615 . - . gene_id "MER4_13q31.1c"; transcript_id "MER4_13q31.1c"; locus "MER4_13q31.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0631"; model_cov "2871"; model_pct "43.5"; chr13 rmsk exon 84877321 84879615 10653 - . gene_id "MER4_13q31.1c"; transcript_id "MER4_13q31.1c"; locus "MER4_13q31.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0631"; repClass "LTR"; repEnd "5280"; repFamily "ERV1"; repLeft "2409"; repStart "-1318"; ### LTR57_13q31.1 ### chr13 rmsk gene 84879616 84880184 . - . gene_id "LTR57_13q31.1"; transcript_id "LTR57_13q31.1"; locus "LTR57_13q31.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0139"; model_cov "592"; model_pct "11.1"; chr13 rmsk exon 84879616 84880184 2163 - . gene_id "LTR57_13q31.1"; transcript_id "LTR57_13q31.1"; locus "LTR57_13q31.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0139"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "988"; repStart "-3763"; ### MER4_13q31.1d ### chr13 rmsk gene 84880185 84880993 . - . gene_id "MER4_13q31.1d"; transcript_id "MER4_13q31.1d"; locus "MER4_13q31.1d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0632"; model_cov "1014"; model_pct "15.4"; chr13 rmsk exon 84880185 84880993 10653 - . gene_id "MER4_13q31.1d"; transcript_id "MER4_13q31.1d"; locus "MER4_13q31.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0632"; repClass "LTR"; repEnd "5280"; repFamily "ERV1"; repLeft "4266"; repStart "-1318"; ### HERVL_13q31.1e ### chr13 rmsk gene 84905049 84907775 . + . gene_id "HERVL_13q31.1e"; transcript_id "HERVL_13q31.1e"; locus "HERVL_13q31.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1049"; model_cov "2201"; model_pct "38.9"; chr13 rmsk exon 84905049 84907242 16651 + . gene_id "HERVL_13q31.1e"; transcript_id "HERVL_13q31.1e"; locus "HERVL_13q31.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1049"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3453"; chr13 rmsk exon 84907243 84907669 2909 + . gene_id "HERVL_13q31.1e"; transcript_id "HERVL_13q31.1e"; locus "HERVL_13q31.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1049"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-101"; chr13 rmsk exon 84907743 84907775 245 + . gene_id "HERVL_13q31.1e"; transcript_id "HERVL_13q31.1e"; locus "HERVL_13q31.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1049"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-8"; repStart "413"; ### HERVL_13q31.1f ### chr13 rmsk gene 85050041 85050800 . - . gene_id "HERVL_13q31.1f"; transcript_id "HERVL_13q31.1f"; locus "HERVL_13q31.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1050"; model_cov "577"; model_pct "10.2"; chr13 rmsk exon 85050041 85050223 1288 - . gene_id "HERVL_13q31.1f"; transcript_id "HERVL_13q31.1f"; locus "HERVL_13q31.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1050"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "186"; repStart "-69"; chr13 rmsk exon 85050224 85050800 4422 - . gene_id "HERVL_13q31.1f"; transcript_id "HERVL_13q31.1f"; locus "HERVL_13q31.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1050"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "4580"; repStart "-497"; ### ERVLE_13q31.1p ### chr13 rmsk gene 85244472 85246464 . + . gene_id "ERVLE_13q31.1p"; transcript_id "ERVLE_13q31.1p"; locus "ERVLE_13q31.1p"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2918"; model_cov "1412"; model_pct "24.9"; chr13 rmsk exon 85244472 85244945 770 + . gene_id "ERVLE_13q31.1p"; transcript_id "ERVLE_13q31.1p"; locus "ERVLE_13q31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2918"; repClass "LTR"; repEnd "1635"; repFamily "ERVL"; repLeft "-4032"; repStart "1144"; chr13 rmsk exon 85245587 85246464 1544 + . gene_id "ERVLE_13q31.1p"; transcript_id "ERVLE_13q31.1p"; locus "ERVLE_13q31.1p"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2918"; repClass "LTR"; repEnd "3028"; repFamily "ERVL"; repLeft "-2639"; repStart "2107"; ### ERVLE_13q31.1q ### chr13 rmsk gene 85503768 85505739 . + . gene_id "ERVLE_13q31.1q"; transcript_id "ERVLE_13q31.1q"; locus "ERVLE_13q31.1q"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2919"; model_cov "1125"; model_pct "19.9"; chr13 rmsk exon 85503768 85503869 264 + . gene_id "ERVLE_13q31.1q"; transcript_id "ERVLE_13q31.1q"; locus "ERVLE_13q31.1q"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2919"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-5521"; repStart "45"; chr13 rmsk exon 85504081 85504440 629 + . gene_id "ERVLE_13q31.1q"; transcript_id "ERVLE_13q31.1q"; locus "ERVLE_13q31.1q"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2919"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "-2140"; repStart "3174"; chr13 rmsk exon 85504986 85505209 298 + . gene_id "ERVLE_13q31.1q"; transcript_id "ERVLE_13q31.1q"; locus "ERVLE_13q31.1q"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2919"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "-1231"; repStart "4218"; chr13 rmsk exon 85505330 85505739 930 + . gene_id "ERVLE_13q31.1q"; transcript_id "ERVLE_13q31.1q"; locus "ERVLE_13q31.1q"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2919"; repClass "LTR"; repEnd "4907"; repFamily "ERVL"; repLeft "-760"; repStart "4454"; ### ERV316A3_13q31.1e ### chr13 rmsk gene 85596256 85597805 . - . gene_id "ERV316A3_13q31.1e"; transcript_id "ERV316A3_13q31.1e"; locus "ERV316A3_13q31.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2222"; model_cov "1209"; model_pct "23.1"; chr13 rmsk exon 85596256 85596631 819 - . gene_id "ERV316A3_13q31.1e"; transcript_id "ERV316A3_13q31.1e"; locus "ERV316A3_13q31.1e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2222"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "6"; repStart "-21"; chr13 rmsk exon 85596637 85597805 2721 - . gene_id "ERV316A3_13q31.1e"; transcript_id "ERV316A3_13q31.1e"; locus "ERV316A3_13q31.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2222"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "3923"; repStart "-94"; ### ERVLB4_13q31.1i ### chr13 rmsk gene 85945244 85947583 . - . gene_id "ERVLB4_13q31.1i"; transcript_id "ERVLB4_13q31.1i"; locus "ERVLB4_13q31.1i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1396"; model_cov "2394"; model_pct "41.9"; chr13 rmsk exon 85945244 85947583 10832 - . gene_id "ERVLB4_13q31.1i"; transcript_id "ERVLB4_13q31.1i"; locus "ERVLB4_13q31.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1396"; repClass "LTR"; repEnd "4600"; repFamily "ERVL"; repLeft "2206"; repStart "-1114"; ### ERV316A3_13q31.1f ### chr13 rmsk gene 86060136 86065069 . - . gene_id "ERV316A3_13q31.1f"; transcript_id "ERV316A3_13q31.1f"; locus "ERV316A3_13q31.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2223"; model_cov "2275"; model_pct "43.5"; chr13 rmsk exon 86060136 86060305 334 - . gene_id "ERV316A3_13q31.1f"; transcript_id "ERV316A3_13q31.1f"; locus "ERV316A3_13q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2223"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "3633"; repStart "-1449"; chr13 rmsk exon 86060474 86061683 1437 - . gene_id "ERV316A3_13q31.1f"; transcript_id "ERV316A3_13q31.1f"; locus "ERV316A3_13q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2223"; repClass "LTR"; repEnd "3605"; repFamily "ERVL"; repLeft "2378"; repStart "-1621"; chr13 rmsk exon 86061804 86062055 366 - . gene_id "ERV316A3_13q31.1f"; transcript_id "ERV316A3_13q31.1f"; locus "ERV316A3_13q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2223"; repClass "LTR"; repEnd "1886"; repFamily "ERVL"; repLeft "1617"; repStart "-3340"; chr13 rmsk exon 86064389 86065069 903 - . gene_id "ERV316A3_13q31.1f"; transcript_id "ERV316A3_13q31.1f"; locus "ERV316A3_13q31.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2223"; repClass "LTR"; repEnd "1874"; repFamily "ERVL"; repLeft "1239"; repStart "-3352"; ### HERVL40_13q31.1d ### chr13 rmsk gene 86087782 86093087 . + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0359"; model_cov "2363"; model_pct "42.7"; chr13 rmsk exon 86087782 86088322 1319 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "2"; chr13 rmsk exon 86088351 86088593 782 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "278"; repFamily "ERVL"; repLeft "-5252"; repStart "35"; chr13 rmsk exon 86089506 86089884 1202 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "1092"; repFamily "ERVL"; repLeft "-4438"; repStart "707"; chr13 rmsk exon 86089896 86090555 1899 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "3574"; repFamily "ERVL"; repLeft "-1956"; repStart "2905"; chr13 rmsk exon 86090910 86091624 1063 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "-1139"; repStart "3607"; chr13 rmsk exon 86092628 86092695 733 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "5320"; repFamily "ERVL"; repLeft "-210"; repStart "5247"; chr13 rmsk exon 86092881 86093087 733 + . gene_id "HERVL40_13q31.1d"; transcript_id "HERVL40_13q31.1d"; locus "HERVL40_13q31.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0359"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5321"; ### HUERSP2_13q31.1c ### chr13 rmsk gene 86184607 86189105 . + . gene_id "HUERSP2_13q31.1c"; transcript_id "HUERSP2_13q31.1c"; locus "HUERSP2_13q31.1c"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0106"; model_cov "3011"; model_pct "97.5"; chr13 rmsk exon 86184607 86185386 4110 + . gene_id "HUERSP2_13q31.1c"; transcript_id "HUERSP2_13q31.1c"; locus "HUERSP2_13q31.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0106"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 86185387 86185523 585 + . gene_id "HUERSP2_13q31.1c"; transcript_id "HUERSP2_13q31.1c"; locus "HUERSP2_13q31.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0106"; repClass "LTR"; repEnd "132"; repFamily "ERV1"; repLeft "-2956"; repStart "1"; chr13 rmsk exon 86185536 86188371 16189 + . gene_id "HUERSP2_13q31.1c"; transcript_id "HUERSP2_13q31.1c"; locus "HUERSP2_13q31.1c"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0106"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "208"; chr13 rmsk exon 86188372 86189105 4148 + . gene_id "HUERSP2_13q31.1c"; transcript_id "HUERSP2_13q31.1c"; locus "HUERSP2_13q31.1c"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0106"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "-110"; repStart "1"; ### ERVL_13q31.1c ### chr13 rmsk gene 86348026 86349815 . - . gene_id "ERVL_13q31.1c"; transcript_id "ERVL_13q31.1c"; locus "ERVL_13q31.1c"; category "unknown"; intModel "ERVL-int"; locid "ERVL-int_0355"; model_cov "1108"; model_pct "19.2"; chr13 rmsk exon 86348026 86348281 1238 - . gene_id "ERVL_13q31.1c"; transcript_id "ERVL_13q31.1c"; locus "ERVL_13q31.1c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0355"; repClass "LTR"; repEnd "257"; repFamily "ERVL"; repLeft "3"; repStart "-157"; chr13 rmsk exon 86348287 86348554 3192 - . gene_id "ERVL_13q31.1c"; transcript_id "ERVL_13q31.1c"; locus "ERVL_13q31.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0355"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "5515"; repStart "-2"; chr13 rmsk exon 86348555 86349085 2511 - . gene_id "ERVL_13q31.1c"; transcript_id "ERVL_13q31.1c"; locus "ERVL_13q31.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0355"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 86349086 86349815 3545 - . gene_id "ERVL_13q31.1c"; transcript_id "ERVL_13q31.1c"; locus "ERVL_13q31.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0355"; repClass "LTR"; repEnd "5555"; repFamily "ERVL"; repLeft "4687"; repStart "-202"; ### HERVH_13q31.1e ### chr13 rmsk gene 86358168 86364136 . + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_0999"; model_cov "4913"; model_pct "63.7"; chr13 rmsk exon 86358168 86358617 3361 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 86358620 86361822 16195 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr13 rmsk exon 86361809 86361952 882 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 86361943 86362447 3391 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr13 rmsk exon 86362450 86363109 4230 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 86363111 86363326 1426 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 86363325 86363685 2224 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 86363686 86364136 3419 + . gene_id "HERVH_13q31.1e"; transcript_id "HERVH_13q31.1e"; locus "HERVH_13q31.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_0999"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_13q31.1r ### chr13 rmsk gene 86532304 86534002 . - . gene_id "ERVLE_13q31.1r"; transcript_id "ERVLE_13q31.1r"; locus "ERVLE_13q31.1r"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2922"; model_cov "1071"; model_pct "18.9"; chr13 rmsk exon 86532304 86532960 867 - . gene_id "ERVLE_13q31.1r"; transcript_id "ERVLE_13q31.1r"; locus "ERVLE_13q31.1r"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2922"; repClass "LTR"; repEnd "3071"; repFamily "ERVL"; repLeft "2401"; repStart "-2596"; chr13 rmsk exon 86533649 86534002 332 - . gene_id "ERVLE_13q31.1r"; transcript_id "ERVLE_13q31.1r"; locus "ERVLE_13q31.1r"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2922"; repClass "LTR"; repEnd "1582"; repFamily "ERVL"; repLeft "1181"; repStart "-4085"; ### MER34B_13q31.1a ### chr13 rmsk gene 86544886 86547486 . - . gene_id "MER34B_13q31.1a"; transcript_id "MER34B_13q31.1a"; locus "MER34B_13q31.1a"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0224"; model_cov "2904"; model_pct "54.2"; chr13 rmsk exon 86544886 86545561 1135 - . gene_id "MER34B_13q31.1a"; transcript_id "MER34B_13q31.1a"; locus "MER34B_13q31.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0224"; repClass "LTR"; repEnd "4833"; repFamily "ERV1"; repLeft "4282"; repStart "-523"; chr13 rmsk exon 86545676 86546918 1914 - . gene_id "MER34B_13q31.1a"; transcript_id "MER34B_13q31.1a"; locus "MER34B_13q31.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0224"; repClass "LTR"; repEnd "2820"; repFamily "ERV1"; repLeft "744"; repStart "-2536"; chr13 rmsk exon 86547223 86547486 1648 - . gene_id "MER34B_13q31.1a"; transcript_id "MER34B_13q31.1a"; locus "MER34B_13q31.1a"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0224"; repClass "LTR"; repEnd "1516"; repFamily "ERV1"; repLeft "1239"; repStart "-3840"; ### MER34B_13q31.1b ### chr13 rmsk gene 86547504 86550744 . - . gene_id "MER34B_13q31.1b"; transcript_id "MER34B_13q31.1b"; locus "MER34B_13q31.1b"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0225"; model_cov "734"; model_pct "13.7"; chr13 rmsk exon 86547504 86547905 854 - . gene_id "MER34B_13q31.1b"; transcript_id "MER34B_13q31.1b"; locus "MER34B_13q31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0225"; repClass "LTR"; repEnd "2199"; repFamily "ERV1"; repLeft "1778"; repStart "-3157"; chr13 rmsk exon 86548660 86548863 871 - . gene_id "MER34B_13q31.1b"; transcript_id "MER34B_13q31.1b"; locus "MER34B_13q31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0225"; repClass "LTR"; repEnd "-624"; repFamily "ERV1"; repLeft "-828"; repStart "-5980"; chr13 rmsk exon 86550636 86550744 449 - . gene_id "MER34B_13q31.1b"; transcript_id "MER34B_13q31.1b"; locus "MER34B_13q31.1b"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0225"; repClass "LTR"; repEnd "-719"; repFamily "ERV1"; repLeft "-828"; repStart "-6075"; ### HERVL_13q31.1g ### chr13 rmsk gene 86580431 86584696 . + . gene_id "HERVL_13q31.1g"; transcript_id "HERVL_13q31.1g"; locus "HERVL_13q31.1g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1052"; model_cov "3791"; model_pct "67.0"; chr13 rmsk exon 86580431 86584158 26799 + . gene_id "HERVL_13q31.1g"; transcript_id "HERVL_13q31.1g"; locus "HERVL_13q31.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1052"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1863"; chr13 rmsk exon 86584159 86584696 1970 + . gene_id "HERVL_13q31.1g"; transcript_id "HERVL_13q31.1g"; locus "HERVL_13q31.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1052"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVL40_13q31.1e ### chr13 rmsk gene 86642931 86645480 . - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0360"; model_cov "1791"; model_pct "32.4"; chr13 rmsk exon 86642931 86643001 287 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "2054"; repStart "-3406"; chr13 rmsk exon 86643258 86643499 2120 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "1747"; repFamily "ERVL"; repLeft "1498"; repStart "-3783"; chr13 rmsk exon 86643535 86643854 2120 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "1177"; repStart "-4033"; chr13 rmsk exon 86644218 86644798 2120 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "1176"; repFamily "ERVL"; repLeft "598"; repStart "-4354"; chr13 rmsk exon 86644895 86645040 392 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "561"; repFamily "ERVL"; repLeft "415"; repStart "-4969"; chr13 rmsk exon 86645053 86645480 1067 - . gene_id "HERVL40_13q31.1e"; transcript_id "HERVL40_13q31.1e"; locus "HERVL40_13q31.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0360"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "8"; repStart "-5094"; ### ERVLE_13q31.1s ### chr13 rmsk gene 86701835 86702461 . - . gene_id "ERVLE_13q31.1s"; transcript_id "ERVLE_13q31.1s"; locus "ERVLE_13q31.1s"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2924"; model_cov "640"; model_pct "11.3"; chr13 rmsk exon 86701835 86702461 1423 - . gene_id "ERVLE_13q31.1s"; transcript_id "ERVLE_13q31.1s"; locus "ERVLE_13q31.1s"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2924"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "3362"; repStart "-1665"; ### HERVFH21_13q31.1 ### chr13 rmsk gene 86757264 86765921 . - . gene_id "HERVFH21_13q31.1"; transcript_id "HERVFH21_13q31.1"; locus "HERVFH21_13q31.1"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0029"; model_cov "8114"; model_pct "100.0"; chr13 rmsk exon 86757264 86757693 1450 - . gene_id "HERVFH21_13q31.1"; transcript_id "HERVFH21_13q31.1"; locus "HERVFH21_13q31.1"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0029"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 86757694 86759520 3170 - . gene_id "HERVFH21_13q31.1"; transcript_id "HERVFH21_13q31.1"; locus "HERVFH21_13q31.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0029"; repClass "LTR"; repEnd "6253"; repFamily "ERV1"; repLeft "3406"; repStart "-276"; chr13 rmsk exon 86760229 86765463 16879 - . gene_id "HERVFH21_13q31.1"; transcript_id "HERVFH21_13q31.1"; locus "HERVFH21_13q31.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0029"; repClass "LTR"; repEnd "5333"; repFamily "ERV1"; repLeft "66"; repStart "-1196"; chr13 rmsk exon 86765504 86765921 1630 - . gene_id "HERVFH21_13q31.1"; transcript_id "HERVFH21_13q31.1"; locus "HERVFH21_13q31.1"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0029"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_13q31.1t ### chr13 rmsk gene 86881066 86884107 . + . gene_id "ERVLE_13q31.1t"; transcript_id "ERVLE_13q31.1t"; locus "ERVLE_13q31.1t"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2925"; model_cov "634"; model_pct "11.2"; chr13 rmsk exon 86881066 86881231 372 + . gene_id "ERVLE_13q31.1t"; transcript_id "ERVLE_13q31.1t"; locus "ERVLE_13q31.1t"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2925"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "-5315"; repStart "189"; chr13 rmsk exon 86883657 86884107 927 + . gene_id "ERVLE_13q31.1t"; transcript_id "ERVLE_13q31.1t"; locus "ERVLE_13q31.1t"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2925"; repClass "LTR"; repEnd "1653"; repFamily "ERVL"; repLeft "-4014"; repStart "1182"; ### ERVLB4_13q31.1j ### chr13 rmsk gene 87004964 87005602 . - . gene_id "ERVLB4_13q31.1j"; transcript_id "ERVLB4_13q31.1j"; locus "ERVLB4_13q31.1j"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1398"; model_cov "642"; model_pct "11.2"; chr13 rmsk exon 87004964 87005602 775 - . gene_id "ERVLB4_13q31.1j"; transcript_id "ERVLB4_13q31.1j"; locus "ERVLB4_13q31.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1398"; repClass "LTR"; repEnd "2730"; repFamily "ERVL"; repLeft "2088"; repStart "-2984"; ### ERVLE_13q31.1u ### chr13 rmsk gene 87012820 87014812 . - . gene_id "ERVLE_13q31.1u"; transcript_id "ERVLE_13q31.1u"; locus "ERVLE_13q31.1u"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2926"; model_cov "1381"; model_pct "24.4"; chr13 rmsk exon 87012820 87012939 251 - . gene_id "ERVLE_13q31.1u"; transcript_id "ERVLE_13q31.1u"; locus "ERVLE_13q31.1u"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2926"; repClass "LTR"; repEnd "4610"; repFamily "ERVL"; repLeft "4488"; repStart "-1057"; chr13 rmsk exon 87012967 87013623 1838 - . gene_id "ERVLE_13q31.1u"; transcript_id "ERVLE_13q31.1u"; locus "ERVLE_13q31.1u"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2926"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "3702"; repStart "-1276"; chr13 rmsk exon 87013929 87014326 809 - . gene_id "ERVLE_13q31.1u"; transcript_id "ERVLE_13q31.1u"; locus "ERVLE_13q31.1u"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2926"; repClass "LTR"; repEnd "3298"; repFamily "ERVL"; repLeft "2899"; repStart "-2369"; chr13 rmsk exon 87014628 87014812 809 - . gene_id "ERVLE_13q31.1u"; transcript_id "ERVLE_13q31.1u"; locus "ERVLE_13q31.1u"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2926"; repClass "LTR"; repEnd "2898"; repFamily "ERVL"; repLeft "2727"; repStart "-2769"; ### ERV316A3_13q31.1g ### chr13 rmsk gene 87034225 87035999 . - . gene_id "ERV316A3_13q31.1g"; transcript_id "ERV316A3_13q31.1g"; locus "ERV316A3_13q31.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2225"; model_cov "1076"; model_pct "20.6"; chr13 rmsk exon 87034225 87035048 1566 - . gene_id "ERV316A3_13q31.1g"; transcript_id "ERV316A3_13q31.1g"; locus "ERV316A3_13q31.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2225"; repClass "LTR"; repEnd "2090"; repFamily "ERVL"; repLeft "1238"; repStart "-3136"; chr13 rmsk exon 87035330 87035530 361 - . gene_id "ERV316A3_13q31.1g"; transcript_id "ERV316A3_13q31.1g"; locus "ERV316A3_13q31.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2225"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "249"; repStart "-4753"; chr13 rmsk exon 87035766 87035999 1055 - . gene_id "ERV316A3_13q31.1g"; transcript_id "ERV316A3_13q31.1g"; locus "ERV316A3_13q31.1g"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2225"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "200"; repStart "-4"; ### HERVH_13q31.2a ### chr13 rmsk gene 87186449 87192108 . - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1000"; model_cov "4918"; model_pct "63.8"; chr13 rmsk exon 87186449 87186857 2780 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 87186858 87187235 2279 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 87187234 87187457 1320 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5593"; repStart "-1894"; chr13 rmsk exon 87187455 87188119 4368 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "4481"; repStart "-2568"; chr13 rmsk exon 87188117 87188618 3326 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 87188609 87188756 879 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 87188751 87191697 15439 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr13 rmsk exon 87191700 87192108 2785 - . gene_id "HERVH_13q31.2a"; transcript_id "HERVH_13q31.2a"; locus "HERVH_13q31.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1000"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_13q31.2a ### chr13 rmsk gene 87206235 87207449 . - . gene_id "HERVL_13q31.2a"; transcript_id "HERVL_13q31.2a"; locus "HERVL_13q31.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1053"; model_cov "786"; model_pct "13.9"; chr13 rmsk exon 87206235 87206671 3125 - . gene_id "HERVL_13q31.2a"; transcript_id "HERVL_13q31.2a"; locus "HERVL_13q31.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1053"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 87206672 87207449 5769 - . gene_id "HERVL_13q31.2a"; transcript_id "HERVL_13q31.2a"; locus "HERVL_13q31.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1053"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4868"; repStart "0"; ### ERVLB4_13q31.2a ### chr13 rmsk gene 87297408 87300252 . - . gene_id "ERVLB4_13q31.2a"; transcript_id "ERVLB4_13q31.2a"; locus "ERVLB4_13q31.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1399"; model_cov "2284"; model_pct "40.0"; chr13 rmsk exon 87297408 87299781 10462 - . gene_id "ERVLB4_13q31.2a"; transcript_id "ERVLB4_13q31.2a"; locus "ERVLB4_13q31.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1399"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "721"; repStart "-2709"; chr13 rmsk exon 87299799 87299864 229 - . gene_id "ERVLB4_13q31.2a"; transcript_id "ERVLB4_13q31.2a"; locus "ERVLB4_13q31.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1399"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "371"; repStart "-113"; chr13 rmsk exon 87300108 87300252 783 - . gene_id "ERVLB4_13q31.2a"; transcript_id "ERVLB4_13q31.2a"; locus "ERVLB4_13q31.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1399"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "1"; repStart "-410"; ### ERVLB4_13q31.2b ### chr13 rmsk gene 87310139 87315631 . + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1400"; model_cov "3980"; model_pct "69.7"; chr13 rmsk exon 87310139 87310541 1643 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-42"; repStart "5"; chr13 rmsk exon 87310546 87312949 14104 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "3181"; repFamily "ERVL"; repLeft "-2533"; repStart "776"; chr13 rmsk exon 87313333 87313457 14104 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "3302"; repFamily "ERVL"; repLeft "-2412"; repStart "3182"; chr13 rmsk exon 87313857 87314097 14104 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "3545"; repFamily "ERVL"; repLeft "-2169"; repStart "3303"; chr13 rmsk exon 87314105 87315239 3276 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4501"; chr13 rmsk exon 87315241 87315631 664 + . gene_id "ERVLB4_13q31.2b"; transcript_id "ERVLB4_13q31.2b"; locus "ERVLB4_13q31.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1400"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "-41"; repStart "2"; ### HERV9_13q31.2 ### chr13 rmsk gene 87333621 87337416 . + . gene_id "HERV9_13q31.2"; transcript_id "HERV9_13q31.2"; locus "HERV9_13q31.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0154"; model_cov "3456"; model_pct "41.0"; chr13 rmsk exon 87333621 87334138 4061 + . gene_id "HERV9_13q31.2"; transcript_id "HERV9_13q31.2"; locus "HERV9_13q31.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0154"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 87334159 87337416 18469 + . gene_id "HERV9_13q31.2"; transcript_id "HERV9_13q31.2"; locus "HERV9_13q31.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0154"; repClass "LTR"; repEnd "3485"; repFamily "ERV1"; repLeft "-4951"; repStart "29"; ### PABLB_13q31.2 ### chr13 rmsk gene 87350507 87354963 . - . gene_id "PABLB_13q31.2"; transcript_id "PABLB_13q31.2"; locus "PABLB_13q31.2"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0077"; model_cov "2583"; model_pct "36.3"; chr13 rmsk exon 87350507 87350576 266 - . gene_id "PABLB_13q31.2"; transcript_id "PABLB_13q31.2"; locus "PABLB_13q31.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0077"; repClass "LTR"; repEnd "7070"; repFamily "ERV1"; repLeft "7023"; repStart "-52"; chr13 rmsk exon 87351842 87353509 2661 - . gene_id "PABLB_13q31.2"; transcript_id "PABLB_13q31.2"; locus "PABLB_13q31.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0077"; repClass "LTR"; repEnd "4205"; repFamily "ERV1"; repLeft "2521"; repStart "-2917"; chr13 rmsk exon 87353977 87354050 271 - . gene_id "PABLB_13q31.2"; transcript_id "PABLB_13q31.2"; locus "PABLB_13q31.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0077"; repClass "LTR"; repEnd "2065"; repFamily "ERV1"; repLeft "1992"; repStart "-5057"; chr13 rmsk exon 87354202 87354963 584 - . gene_id "PABLB_13q31.2"; transcript_id "PABLB_13q31.2"; locus "PABLB_13q31.2"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0077"; repClass "LTR"; repEnd "1874"; repFamily "ERV1"; repLeft "1095"; repStart "-5248"; ### ERVLB4_13q31.2c ### chr13 rmsk gene 87596376 87598310 . + . gene_id "ERVLB4_13q31.2c"; transcript_id "ERVLB4_13q31.2c"; locus "ERVLB4_13q31.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1401"; model_cov "1182"; model_pct "20.7"; chr13 rmsk exon 87596376 87596973 4580 + . gene_id "ERVLB4_13q31.2c"; transcript_id "ERVLB4_13q31.2c"; locus "ERVLB4_13q31.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1401"; repClass "LTR"; repEnd "5136"; repFamily "ERVL"; repLeft "-578"; repStart "4529"; chr13 rmsk exon 87597264 87597275 4580 + . gene_id "ERVLB4_13q31.2c"; transcript_id "ERVLB4_13q31.2c"; locus "ERVLB4_13q31.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1401"; repClass "LTR"; repEnd "5168"; repFamily "ERVL"; repLeft "-546"; repStart "5137"; chr13 rmsk exon 87597579 87598174 4580 + . gene_id "ERVLB4_13q31.2c"; transcript_id "ERVLB4_13q31.2c"; locus "ERVLB4_13q31.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1401"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5169"; chr13 rmsk exon 87598175 87598310 704 + . gene_id "ERVLB4_13q31.2c"; transcript_id "ERVLB4_13q31.2c"; locus "ERVLB4_13q31.2c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1401"; repClass "LTR"; repEnd "138"; repFamily "ERVL"; repLeft "-259"; repStart "1"; ### ERVLB4_13q31.2d ### chr13 rmsk gene 87718622 87720860 . + . gene_id "ERVLB4_13q31.2d"; transcript_id "ERVLB4_13q31.2d"; locus "ERVLB4_13q31.2d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1402"; model_cov "2007"; model_pct "35.1"; chr13 rmsk exon 87718622 87718911 261 + . gene_id "ERVLB4_13q31.2d"; transcript_id "ERVLB4_13q31.2d"; locus "ERVLB4_13q31.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1402"; repClass "LTR"; repEnd "1835"; repFamily "ERVL"; repLeft "-3879"; repStart "1535"; chr13 rmsk exon 87719084 87719351 619 + . gene_id "ERVLB4_13q31.2d"; transcript_id "ERVLB4_13q31.2d"; locus "ERVLB4_13q31.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1402"; repClass "LTR"; repEnd "2665"; repFamily "ERVL"; repLeft "-3049"; repStart "2397"; chr13 rmsk exon 87719451 87720860 1842 + . gene_id "ERVLB4_13q31.2d"; transcript_id "ERVLB4_13q31.2d"; locus "ERVLB4_13q31.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1402"; repClass "LTR"; repEnd "3533"; repFamily "ERVL"; repLeft "-2181"; repStart "2094"; ### ERV316A3_13q31.2a ### chr13 rmsk gene 87721021 87723003 . + . gene_id "ERV316A3_13q31.2a"; transcript_id "ERV316A3_13q31.2a"; locus "ERV316A3_13q31.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2226"; model_cov "1609"; model_pct "30.8"; chr13 rmsk exon 87721021 87722573 2810 + . gene_id "ERV316A3_13q31.2a"; transcript_id "ERV316A3_13q31.2a"; locus "ERV316A3_13q31.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2226"; repClass "LTR"; repEnd "4932"; repFamily "ERVL"; repLeft "-294"; repStart "3323"; chr13 rmsk exon 87722857 87723003 579 + . gene_id "ERV316A3_13q31.2a"; transcript_id "ERV316A3_13q31.2a"; locus "ERV316A3_13q31.2a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2226"; repClass "LTR"; repEnd "148"; repFamily "ERVL"; repLeft "-308"; repStart "1"; ### ERVLE_13q31.2a ### chr13 rmsk gene 87872973 87874662 . + . gene_id "ERVLE_13q31.2a"; transcript_id "ERVLE_13q31.2a"; locus "ERVLE_13q31.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2927"; model_cov "1212"; model_pct "21.4"; chr13 rmsk exon 87872973 87873912 1021 + . gene_id "ERVLE_13q31.2a"; transcript_id "ERVLE_13q31.2a"; locus "ERVLE_13q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2927"; repClass "LTR"; repEnd "2004"; repFamily "ERVL"; repLeft "-3663"; repStart "975"; chr13 rmsk exon 87874479 87874662 478 + . gene_id "ERVLE_13q31.2a"; transcript_id "ERVLE_13q31.2a"; locus "ERVLE_13q31.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2927"; repClass "LTR"; repEnd "2849"; repFamily "ERVL"; repLeft "-2818"; repStart "2666"; ### MER4_13q31.2 ### chr13 rmsk gene 87984947 87990935 . + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0634"; model_cov "5698"; model_pct "86.4"; chr13 rmsk exon 87984947 87985060 396 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0634"; repClass "LTR"; repEnd "-638"; repFamily "ERV1"; repLeft "-7236"; repStart "-722"; chr13 rmsk exon 87985157 87985420 955 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0634"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "872"; chr13 rmsk exon 87985681 87985950 1308 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0634"; repClass "LTR"; repEnd "1956"; repFamily "ERV1"; repLeft "-4642"; repStart "1688"; chr13 rmsk exon 87986087 87989833 12671 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0634"; repClass "LTR"; repEnd "6284"; repFamily "ERV1"; repLeft "-314"; repStart "1461"; chr13 rmsk exon 87990142 87990452 1467 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0634"; repClass "LTR"; repEnd "6585"; repFamily "ERV1"; repLeft "-13"; repStart "6301"; chr13 rmsk exon 87990477 87990935 2446 + . gene_id "MER4_13q31.2"; transcript_id "MER4_13q31.2"; locus "MER4_13q31.2"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0634"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_13q31.2e ### chr13 rmsk gene 88156898 88162850 . - . gene_id "ERVLB4_13q31.2e"; transcript_id "ERVLB4_13q31.2e"; locus "ERVLB4_13q31.2e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1403"; model_cov "5754"; model_pct "100.0"; chr13 rmsk exon 88156898 88157415 2033 - . gene_id "ERVLB4_13q31.2e"; transcript_id "ERVLB4_13q31.2e"; locus "ERVLB4_13q31.2e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1403"; repClass "LTR"; repEnd "543"; repFamily "ERVL"; repLeft "1"; repStart "-11"; chr13 rmsk exon 88157416 88162850 18008 - . gene_id "ERVLB4_13q31.2e"; transcript_id "ERVLB4_13q31.2e"; locus "ERVLB4_13q31.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1403"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "-40"; repStart "0"; ### HERVL_13q31.2b ### chr13 rmsk gene 88279107 88284464 . + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1054"; model_cov "4206"; model_pct "74.4"; chr13 rmsk exon 88279107 88279649 1886 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chr13 rmsk exon 88279650 88279851 7996 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "-5456"; repStart "1"; chr13 rmsk exon 88280138 88281222 7996 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "1331"; repFamily "ERVL"; repLeft "-4323"; repStart "199"; chr13 rmsk exon 88281234 88282634 9951 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "2782"; repFamily "ERVL"; repLeft "-2872"; repStart "1374"; chr13 rmsk exon 88282637 88284066 9548 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4185"; chr13 rmsk exon 88284069 88284464 1680 + . gene_id "HERVL_13q31.2b"; transcript_id "HERVL_13q31.2b"; locus "HERVL_13q31.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1054"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-158"; repStart "-98"; ### ERVLE_13q31.2b ### chr13 rmsk gene 88295435 88298209 . + . gene_id "ERVLE_13q31.2b"; transcript_id "ERVLE_13q31.2b"; locus "ERVLE_13q31.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2930"; model_cov "2832"; model_pct "50.0"; chr13 rmsk exon 88295435 88298209 2271 + . gene_id "ERVLE_13q31.2b"; transcript_id "ERVLE_13q31.2b"; locus "ERVLE_13q31.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2930"; repClass "LTR"; repEnd "3550"; repFamily "ERVL"; repLeft "-2117"; repStart "718"; ### ERV316A3_13q31.2b ### chr13 rmsk gene 88405869 88410184 . + . gene_id "ERV316A3_13q31.2b"; transcript_id "ERV316A3_13q31.2b"; locus "ERV316A3_13q31.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2227"; model_cov "2156"; model_pct "41.3"; chr13 rmsk exon 88405869 88406511 532 + . gene_id "ERV316A3_13q31.2b"; transcript_id "ERV316A3_13q31.2b"; locus "ERV316A3_13q31.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2227"; repClass "LTR"; repEnd "2304"; repFamily "ERVL"; repLeft "-2922"; repStart "1533"; chr13 rmsk exon 88407636 88408641 1783 + . gene_id "ERV316A3_13q31.2b"; transcript_id "ERV316A3_13q31.2b"; locus "ERV316A3_13q31.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2227"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "-796"; repStart "3404"; chr13 rmsk exon 88409145 88409509 1783 + . gene_id "ERV316A3_13q31.2b"; transcript_id "ERV316A3_13q31.2b"; locus "ERV316A3_13q31.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2227"; repClass "LTR"; repEnd "4790"; repFamily "ERVL"; repLeft "-436"; repStart "4431"; chr13 rmsk exon 88409990 88410184 512 + . gene_id "ERV316A3_13q31.2b"; transcript_id "ERV316A3_13q31.2b"; locus "ERV316A3_13q31.2b"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2227"; repClass "LTR"; repEnd "241"; repFamily "ERVL"; repLeft "-254"; repStart "40"; ### ERVLB4_13q31.2f ### chr13 rmsk gene 88440532 88442078 . + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1404"; model_cov "790"; model_pct "13.8"; chr13 rmsk exon 88440532 88441012 2002 + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1404"; repClass "LTR"; repEnd "530"; repFamily "ERVL"; repLeft "-26"; repStart "37"; chr13 rmsk exon 88441070 88441128 228 + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1404"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "499"; chr13 rmsk exon 88441130 88441857 3462 + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1404"; repClass "LTR"; repEnd "792"; repFamily "ERVL"; repLeft "-4922"; repStart "2"; chr13 rmsk exon 88441858 88442012 742 + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1404"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-38"; repStart "348"; chr13 rmsk exon 88442042 88442078 742 + . gene_id "ERVLB4_13q31.2f"; transcript_id "ERVLB4_13q31.2f"; locus "ERVLB4_13q31.2f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1404"; repClass "LTR"; repEnd "555"; repFamily "ERVL"; repLeft "-1"; repStart "519"; ### HERVH_13q31.2b ### chr13 rmsk gene 88512819 88518743 . - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1001"; model_cov "4916"; model_pct "63.7"; chr13 rmsk exon 88512819 88513269 3397 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 88513270 88513649 2507 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 88513648 88513863 1391 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 88513865 88514521 4235 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 88514524 88515026 3365 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 88515017 88515166 936 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 88515146 88518290 17183 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 88518293 88518743 3354 - . gene_id "HERVH_13q31.2b"; transcript_id "HERVH_13q31.2b"; locus "HERVH_13q31.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1001"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_13q31.2c ### chr13 rmsk gene 88657779 88659123 . - . gene_id "ERVLE_13q31.2c"; transcript_id "ERVLE_13q31.2c"; locus "ERVLE_13q31.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2931"; model_cov "1324"; model_pct "23.4"; chr13 rmsk exon 88657779 88658500 1860 - . gene_id "ERVLE_13q31.2c"; transcript_id "ERVLE_13q31.2c"; locus "ERVLE_13q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2931"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "4470"; repStart "-465"; chr13 rmsk exon 88658637 88659123 1108 - . gene_id "ERVLE_13q31.2c"; transcript_id "ERVLE_13q31.2c"; locus "ERVLE_13q31.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2931"; repClass "LTR"; repEnd "4410"; repFamily "ERVL"; repLeft "3818"; repStart "-1257"; ### ERVLB4_13q31.2g ### chr13 rmsk gene 88680373 88686512 . - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1405"; model_cov "4014"; model_pct "70.2"; chr13 rmsk exon 88680373 88680562 724 - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1405"; repClass "LTR"; repEnd "4114"; repFamily "ERVL"; repLeft "3918"; repStart "-1600"; chr13 rmsk exon 88680544 88682921 11223 - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1405"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "1405"; repStart "-1900"; chr13 rmsk exon 88684633 88686056 3007 - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1405"; repClass "LTR"; repEnd "1411"; repFamily "ERVL"; repLeft "2"; repStart "-4303"; chr13 rmsk exon 88686058 88686101 1555 - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1405"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "375"; repStart "0"; chr13 rmsk exon 88686135 88686512 1555 - . gene_id "ERVLB4_13q31.2g"; transcript_id "ERVLB4_13q31.2g"; locus "ERVLB4_13q31.2g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1405"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVLE_13q31.2d ### chr13 rmsk gene 88748389 88752248 . - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2934"; model_cov "2996"; model_pct "52.9"; chr13 rmsk exon 88748389 88748547 443 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "4683"; repStart "-823"; chr13 rmsk exon 88748623 88749365 1447 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "4540"; repFamily "ERVL"; repLeft "3644"; repStart "-1127"; chr13 rmsk exon 88749511 88749823 588 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "3612"; repFamily "ERVL"; repLeft "3297"; repStart "-2055"; chr13 rmsk exon 88749957 88750186 650 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "3132"; repFamily "ERVL"; repLeft "2899"; repStart "-2535"; chr13 rmsk exon 88750434 88750545 650 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "2898"; repFamily "ERVL"; repLeft "2783"; repStart "-2769"; chr13 rmsk exon 88750859 88751270 951 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "2608"; repFamily "ERVL"; repLeft "2181"; repStart "-3059"; chr13 rmsk exon 88751432 88752248 1033 - . gene_id "ERVLE_13q31.2d"; transcript_id "ERVLE_13q31.2d"; locus "ERVLE_13q31.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2934"; repClass "LTR"; repEnd "2131"; repFamily "ERVL"; repLeft "1282"; repStart "-3536"; ### ERV316A3_13q31.2c ### chr13 rmsk gene 89069770 89071913 . + . gene_id "ERV316A3_13q31.2c"; transcript_id "ERV316A3_13q31.2c"; locus "ERV316A3_13q31.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2229"; model_cov "1252"; model_pct "24.0"; chr13 rmsk exon 89069770 89070455 2712 + . gene_id "ERV316A3_13q31.2c"; transcript_id "ERV316A3_13q31.2c"; locus "ERV316A3_13q31.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2229"; repClass "LTR"; repEnd "4465"; repFamily "ERVL"; repLeft "-761"; repStart "3814"; chr13 rmsk exon 89070809 89071360 2712 + . gene_id "ERV316A3_13q31.2c"; transcript_id "ERV316A3_13q31.2c"; locus "ERV316A3_13q31.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2229"; repClass "LTR"; repEnd "5067"; repFamily "ERVL"; repLeft "-159"; repStart "4466"; chr13 rmsk exon 89071521 89071913 414 + . gene_id "ERV316A3_13q31.2c"; transcript_id "ERV316A3_13q31.2c"; locus "ERV316A3_13q31.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2229"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-10"; repStart "19"; ### ERVLB4_13q31.2h ### chr13 rmsk gene 89083830 89084881 . + . gene_id "ERVLB4_13q31.2h"; transcript_id "ERVLB4_13q31.2h"; locus "ERVLB4_13q31.2h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1406"; model_cov "997"; model_pct "17.4"; chr13 rmsk exon 89083830 89084130 439 + . gene_id "ERVLB4_13q31.2h"; transcript_id "ERVLB4_13q31.2h"; locus "ERVLB4_13q31.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1406"; repClass "LTR"; repEnd "4407"; repFamily "ERVL"; repLeft "-1307"; repStart "4090"; chr13 rmsk exon 89084210 89084881 518 + . gene_id "ERVLB4_13q31.2h"; transcript_id "ERVLB4_13q31.2h"; locus "ERVLB4_13q31.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1406"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-453"; repStart "4581"; ### ERVLE_13q31.2e ### chr13 rmsk gene 89323658 89326652 . - . gene_id "ERVLE_13q31.2e"; transcript_id "ERVLE_13q31.2e"; locus "ERVLE_13q31.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2937"; model_cov "1362"; model_pct "24.0"; chr13 rmsk exon 89323658 89324129 872 - . gene_id "ERVLE_13q31.2e"; transcript_id "ERVLE_13q31.2e"; locus "ERVLE_13q31.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2937"; repClass "LTR"; repEnd "4270"; repFamily "ERVL"; repLeft "3805"; repStart "-1397"; chr13 rmsk exon 89325218 89325492 385 - . gene_id "ERVLE_13q31.2e"; transcript_id "ERVLE_13q31.2e"; locus "ERVLE_13q31.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2937"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "3473"; repStart "-1897"; chr13 rmsk exon 89325809 89326025 302 - . gene_id "ERVLE_13q31.2e"; transcript_id "ERVLE_13q31.2e"; locus "ERVLE_13q31.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2937"; repClass "LTR"; repEnd "2867"; repFamily "ERVL"; repLeft "2645"; repStart "-2800"; chr13 rmsk exon 89326268 89326652 455 - . gene_id "ERVLE_13q31.2e"; transcript_id "ERVLE_13q31.2e"; locus "ERVLE_13q31.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2937"; repClass "LTR"; repEnd "2358"; repFamily "ERVL"; repLeft "1980"; repStart "-3309"; ### ERVLB4_13q31.2i ### chr13 rmsk gene 89327142 89329616 . - . gene_id "ERVLB4_13q31.2i"; transcript_id "ERVLB4_13q31.2i"; locus "ERVLB4_13q31.2i"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1407"; model_cov "1717"; model_pct "30.0"; chr13 rmsk exon 89327142 89327642 1667 - . gene_id "ERVLB4_13q31.2i"; transcript_id "ERVLB4_13q31.2i"; locus "ERVLB4_13q31.2i"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1407"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 89327643 89328284 7971 - . gene_id "ERVLB4_13q31.2i"; transcript_id "ERVLB4_13q31.2i"; locus "ERVLB4_13q31.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1407"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5079"; repStart "0"; chr13 rmsk exon 89328588 89329616 7971 - . gene_id "ERVLB4_13q31.2i"; transcript_id "ERVLB4_13q31.2i"; locus "ERVLB4_13q31.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1407"; repClass "LTR"; repEnd "5078"; repFamily "ERVL"; repLeft "3996"; repStart "-636"; ### ERVLE_13q31.3a ### chr13 rmsk gene 89457572 89463328 . - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2938"; model_cov "3984"; model_pct "70.3"; chr13 rmsk exon 89457572 89458854 4290 - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2938"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "4295"; repStart "-14"; chr13 rmsk exon 89458855 89459674 2188 - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2938"; repClass "LTR"; repEnd "2735"; repFamily "ERVL"; repLeft "1906"; repStart "-2932"; chr13 rmsk exon 89461442 89462539 2689 - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2938"; repClass "LTR"; repEnd "1900"; repFamily "ERVL"; repLeft "676"; repStart "-3767"; chr13 rmsk exon 89462638 89463192 1500 - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2938"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "5"; repStart "-5089"; chr13 rmsk exon 89463260 89463328 259 - . gene_id "ERVLE_13q31.3a"; transcript_id "ERVLE_13q31.3a"; locus "ERVLE_13q31.3a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2938"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "482"; repStart "-115"; ### ERV316A3_13q31.3a ### chr13 rmsk gene 89574728 89577047 . - . gene_id "ERV316A3_13q31.3a"; transcript_id "ERV316A3_13q31.3a"; locus "ERV316A3_13q31.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2231"; model_cov "835"; model_pct "16.0"; chr13 rmsk exon 89574728 89575119 931 - . gene_id "ERV316A3_13q31.3a"; transcript_id "ERV316A3_13q31.3a"; locus "ERV316A3_13q31.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2231"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-21"; repStart "0"; chr13 rmsk exon 89575337 89575526 574 - . gene_id "ERV316A3_13q31.3a"; transcript_id "ERV316A3_13q31.3a"; locus "ERV316A3_13q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2231"; repClass "LTR"; repEnd "4992"; repFamily "ERVL"; repLeft "4802"; repStart "-234"; chr13 rmsk exon 89576234 89576666 577 - . gene_id "ERV316A3_13q31.3a"; transcript_id "ERV316A3_13q31.3a"; locus "ERV316A3_13q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2231"; repClass "LTR"; repEnd "4491"; repFamily "ERVL"; repLeft "3904"; repStart "-735"; chr13 rmsk exon 89576989 89577047 297 - . gene_id "ERV316A3_13q31.3a"; transcript_id "ERV316A3_13q31.3a"; locus "ERV316A3_13q31.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2231"; repClass "LTR"; repEnd "3874"; repFamily "ERVL"; repLeft "3816"; repStart "-1352"; ### HERVL_13q31.3a ### chr13 rmsk gene 89594453 89598376 . + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1055"; model_cov "2241"; model_pct "39.6"; chr13 rmsk exon 89594453 89594879 2452 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chr13 rmsk exon 89595306 89597273 15212 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "5397"; repFamily "ERVL"; repLeft "-257"; repStart "3421"; chr13 rmsk exon 89597399 89597659 1838 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5389"; chr13 rmsk exon 89597660 89598052 2727 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr13 rmsk exon 89598163 89598212 333 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; chr13 rmsk exon 89598234 89598376 1230 + . gene_id "HERVL_13q31.3a"; transcript_id "HERVL_13q31.3a"; locus "HERVL_13q31.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "HERVL-int_1055"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "-185"; repStart "181"; ### HERVL_13q31.3b ### chr13 rmsk gene 89603726 89605701 . - . gene_id "HERVL_13q31.3b"; transcript_id "HERVL_13q31.3b"; locus "HERVL_13q31.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1056"; model_cov "1433"; model_pct "25.3"; chr13 rmsk exon 89603726 89604271 1792 - . gene_id "HERVL_13q31.3b"; transcript_id "HERVL_13q31.3b"; locus "HERVL_13q31.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1056"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-100"; repStart "-2"; chr13 rmsk exon 89604272 89605701 10065 - . gene_id "HERVL_13q31.3b"; transcript_id "HERVL_13q31.3b"; locus "HERVL_13q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1056"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4221"; repStart "0"; ### PABLB_13q31.3 ### chr13 rmsk gene 89656763 89661585 . + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0080"; model_cov "2834"; model_pct "39.8"; chr13 rmsk exon 89656763 89656895 446 + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0080"; repClass "LTR"; repEnd "-1256"; repFamily "ERV1"; repLeft "-8378"; repStart "-1499"; chr13 rmsk exon 89656927 89656989 309 + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0080"; repClass "LTR"; repEnd "-409"; repFamily "ERV1"; repLeft "-7531"; repStart "-471"; chr13 rmsk exon 89657382 89657834 432 + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0080"; repClass "LTR"; repEnd "1396"; repFamily "ERV1"; repLeft "-5726"; repStart "953"; chr13 rmsk exon 89659294 89661032 1793 + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0080"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "-3343"; repStart "1907"; chr13 rmsk exon 89661368 89661585 471 + . gene_id "PABLB_13q31.3"; transcript_id "PABLB_13q31.3"; locus "PABLB_13q31.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0080"; repClass "LTR"; repEnd "5920"; repFamily "ERV1"; repLeft "-1202"; repStart "5706"; ### ERV316A3_13q31.3b ### chr13 rmsk gene 89888851 89896607 . - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2232"; model_cov "3777"; model_pct "72.3"; chr13 rmsk exon 89888851 89889161 516 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "19"; repStart "-118"; chr13 rmsk exon 89889357 89889931 696 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "4751"; repFamily "ERVL"; repLeft "4174"; repStart "-475"; chr13 rmsk exon 89892091 89892469 650 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "3847"; repStart "-1001"; chr13 rmsk exon 89892731 89895023 2598 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "3489"; repFamily "ERVL"; repLeft "1279"; repStart "-1737"; chr13 rmsk exon 89895483 89895684 522 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "1386"; repFamily "ERVL"; repLeft "1178"; repStart "-3840"; chr13 rmsk exon 89895713 89895903 553 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "1134"; repFamily "ERVL"; repLeft "921"; repStart "-4092"; chr13 rmsk exon 89896260 89896434 385 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "921"; repFamily "ERVL"; repLeft "730"; repStart "-4305"; chr13 rmsk exon 89896444 89896607 423 - . gene_id "ERV316A3_13q31.3b"; transcript_id "ERV316A3_13q31.3b"; locus "ERV316A3_13q31.3b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2232"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "294"; repStart "0"; ### ERV316A3_13q31.3c ### chr13 rmsk gene 90105726 90107807 . - . gene_id "ERV316A3_13q31.3c"; transcript_id "ERV316A3_13q31.3c"; locus "ERV316A3_13q31.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2233"; model_cov "1099"; model_pct "21.0"; chr13 rmsk exon 90105726 90106119 568 - . gene_id "ERV316A3_13q31.3c"; transcript_id "ERV316A3_13q31.3c"; locus "ERV316A3_13q31.3c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2233"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "8"; repStart "-1"; chr13 rmsk exon 90106364 90107372 2375 - . gene_id "ERV316A3_13q31.3c"; transcript_id "ERV316A3_13q31.3c"; locus "ERV316A3_13q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2233"; repClass "LTR"; repEnd "4954"; repFamily "ERVL"; repLeft "3872"; repStart "-272"; chr13 rmsk exon 90107790 90107807 2375 - . gene_id "ERV316A3_13q31.3c"; transcript_id "ERV316A3_13q31.3c"; locus "ERV316A3_13q31.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2233"; repClass "LTR"; repEnd "3871"; repFamily "ERVL"; repLeft "3854"; repStart "-1355"; ### HERVL_13q31.3c ### chr13 rmsk gene 90153311 90156487 . - . gene_id "HERVL_13q31.3c"; transcript_id "HERVL_13q31.3c"; locus "HERVL_13q31.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1057"; model_cov "2763"; model_pct "48.9"; chr13 rmsk exon 90153311 90156051 20215 - . gene_id "HERVL_13q31.3c"; transcript_id "HERVL_13q31.3c"; locus "HERVL_13q31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1057"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "1"; repStart "-2890"; chr13 rmsk exon 90156052 90156487 3020 - . gene_id "HERVL_13q31.3c"; transcript_id "HERVL_13q31.3c"; locus "HERVL_13q31.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1057"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### ERV316A3_13q31.3d ### chr13 rmsk gene 90206878 90208500 . - . gene_id "ERV316A3_13q31.3d"; transcript_id "ERV316A3_13q31.3d"; locus "ERV316A3_13q31.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2234"; model_cov "622"; model_pct "11.9"; chr13 rmsk exon 90206878 90207212 558 - . gene_id "ERV316A3_13q31.3d"; transcript_id "ERV316A3_13q31.3d"; locus "ERV316A3_13q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2234"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3585"; repStart "-1290"; chr13 rmsk exon 90207291 90207462 453 - . gene_id "ERV316A3_13q31.3d"; transcript_id "ERV316A3_13q31.3d"; locus "ERV316A3_13q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2234"; repClass "LTR"; repEnd "3171"; repFamily "ERVL"; repLeft "2998"; repStart "-2055"; chr13 rmsk exon 90208380 90208500 413 - . gene_id "ERV316A3_13q31.3d"; transcript_id "ERV316A3_13q31.3d"; locus "ERV316A3_13q31.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2234"; repClass "LTR"; repEnd "2664"; repFamily "ERVL"; repLeft "2566"; repStart "-2562"; ### HERVP71A_13q31.3 ### chr13 rmsk gene 90287066 90294326 . + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0067"; model_cov "4386"; model_pct "57.8"; chr13 rmsk exon 90287066 90287518 3231 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "7"; chr13 rmsk exon 90287519 90287797 1926 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "277"; repFamily "ERV1"; repLeft "-7313"; repStart "1"; chr13 rmsk exon 90287796 90287845 276 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "431"; repFamily "ERV1"; repLeft "-7159"; repStart "383"; chr13 rmsk exon 90287844 90288281 3298 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "823"; repFamily "ERV1"; repLeft "-6767"; repStart "388"; chr13 rmsk exon 90289111 90289350 6561 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "1912"; repFamily "ERV1"; repLeft "-5678"; repStart "1666"; chr13 rmsk exon 90289938 90290628 6561 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "2604"; repFamily "ERV1"; repLeft "-4986"; repStart "1913"; chr13 rmsk exon 90290954 90291710 18673 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "5726"; repFamily "ERV1"; repLeft "-1864"; repStart "4899"; chr13 rmsk exon 90292006 90293873 18673 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "5727"; chr13 rmsk exon 90293874 90294326 3122 + . gene_id "HERVP71A_13q31.3"; transcript_id "HERVP71A_13q31.3"; locus "HERVP71A_13q31.3"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0067"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_13q31.3 ### chr13 rmsk gene 90431764 90436574 . - . gene_id "PRIMA4_13q31.3"; transcript_id "PRIMA4_13q31.3"; locus "PRIMA4_13q31.3"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0184"; model_cov "3470"; model_pct "42.0"; chr13 rmsk exon 90431764 90434597 18042 - . gene_id "PRIMA4_13q31.3"; transcript_id "PRIMA4_13q31.3"; locus "PRIMA4_13q31.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0184"; repClass "LTR"; repEnd "4857"; repFamily "ERV1"; repLeft "2017"; repStart "-3413"; chr13 rmsk exon 90434864 90435495 4172 - . gene_id "PRIMA4_13q31.3"; transcript_id "PRIMA4_13q31.3"; locus "PRIMA4_13q31.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0184"; repClass "LTR"; repEnd "1191"; repFamily "ERV1"; repLeft "561"; repStart "-7079"; chr13 rmsk exon 90435983 90436574 2460 - . gene_id "PRIMA4_13q31.3"; transcript_id "PRIMA4_13q31.3"; locus "PRIMA4_13q31.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0184"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL18_13q31.3 ### chr13 rmsk gene 90613417 90618427 . - . gene_id "HERVL18_13q31.3"; transcript_id "HERVL18_13q31.3"; locus "HERVL18_13q31.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0124"; model_cov "4606"; model_pct "76.2"; chr13 rmsk exon 90613417 90613774 2390 - . gene_id "HERVL18_13q31.3"; transcript_id "HERVL18_13q31.3"; locus "HERVL18_13q31.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0124"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr13 rmsk exon 90613776 90618338 27203 - . gene_id "HERVL18_13q31.3"; transcript_id "HERVL18_13q31.3"; locus "HERVL18_13q31.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0124"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "1441"; repStart "0"; chr13 rmsk exon 90618339 90618427 528 - . gene_id "HERVL18_13q31.3"; transcript_id "HERVL18_13q31.3"; locus "HERVL18_13q31.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0124"; repClass "LTR"; repEnd "89"; repFamily "ERVL"; repLeft "1"; repStart "-268"; ### ERV316A3_13q31.3e ### chr13 rmsk gene 90726719 90728480 . + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2236"; model_cov "933"; model_pct "17.9"; chr13 rmsk exon 90726719 90726889 441 + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2236"; repClass "LTR"; repEnd "186"; repFamily "ERVL"; repLeft "-236"; repStart "11"; chr13 rmsk exon 90727062 90727451 1287 + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2236"; repClass "LTR"; repEnd "3893"; repFamily "ERVL"; repLeft "-1333"; repStart "3489"; chr13 rmsk exon 90727452 90727625 529 + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2236"; repClass "LTR"; repEnd "3815"; repFamily "ERVL"; repLeft "-1411"; repStart "3640"; chr13 rmsk exon 90727788 90728134 558 + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2236"; repClass "LTR"; repEnd "4366"; repFamily "ERVL"; repLeft "-860"; repStart "4012"; chr13 rmsk exon 90728185 90728480 1025 + . gene_id "ERV316A3_13q31.3e"; transcript_id "ERV316A3_13q31.3e"; locus "ERV316A3_13q31.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2236"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-10"; repStart "135"; ### HERVH_13q31.3a ### chr13 rmsk gene 90839564 90845144 . + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1002"; model_cov "4903"; model_pct "63.6"; chr13 rmsk exon 90839564 90839993 2588 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 90839994 90842844 19296 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr13 rmsk exon 90842839 90842983 838 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr13 rmsk exon 90842983 90843459 3096 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr13 rmsk exon 90843462 90844110 4175 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 90844108 90844330 1393 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr13 rmsk exon 90844329 90844708 2451 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 90844709 90845144 2682 + . gene_id "HERVH_13q31.3a"; transcript_id "HERVH_13q31.3a"; locus "HERVH_13q31.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1002"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_13q31.3b ### chr13 rmsk gene 90848573 90854278 . - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1003"; model_cov "4916"; model_pct "63.7"; chr13 rmsk exon 90848573 90849023 3469 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 90849024 90849403 2517 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr13 rmsk exon 90849402 90849615 1339 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr13 rmsk exon 90849617 90850279 4291 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr13 rmsk exon 90850282 90850784 3282 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr13 rmsk exon 90850775 90850924 1012 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 90850904 90853828 16662 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 90853831 90854278 3295 - . gene_id "HERVH_13q31.3b"; transcript_id "HERVH_13q31.3b"; locus "HERVH_13q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1003"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_13q31.3 ### chr13 rmsk gene 91223345 91225948 . - . gene_id "HERVL40_13q31.3"; transcript_id "HERVL40_13q31.3"; locus "HERVL40_13q31.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0363"; model_cov "1576"; model_pct "28.5"; chr13 rmsk exon 91223345 91223795 1388 - . gene_id "HERVL40_13q31.3"; transcript_id "HERVL40_13q31.3"; locus "HERVL40_13q31.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0363"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chr13 rmsk exon 91224348 91225641 4509 - . gene_id "HERVL40_13q31.3"; transcript_id "HERVL40_13q31.3"; locus "HERVL40_13q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0363"; repClass "LTR"; repEnd "4670"; repFamily "ERVL"; repLeft "3342"; repStart "-860"; chr13 rmsk exon 91225696 91225948 815 - . gene_id "HERVL40_13q31.3"; transcript_id "HERVL40_13q31.3"; locus "HERVL40_13q31.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0363"; repClass "LTR"; repEnd "2513"; repFamily "ERVL"; repLeft "2265"; repStart "-3017"; ### ERV316A3_13q31.3f ### chr13 rmsk gene 91366365 91367539 . - . gene_id "ERV316A3_13q31.3f"; transcript_id "ERV316A3_13q31.3f"; locus "ERV316A3_13q31.3f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2237"; model_cov "590"; model_pct "11.3"; chr13 rmsk exon 91366365 91366817 874 - . gene_id "ERV316A3_13q31.3f"; transcript_id "ERV316A3_13q31.3f"; locus "ERV316A3_13q31.3f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2237"; repClass "LTR"; repEnd "536"; repFamily "ERVL"; repLeft "1"; repStart "-32"; chr13 rmsk exon 91366948 91367539 918 - . gene_id "ERV316A3_13q31.3f"; transcript_id "ERV316A3_13q31.3f"; locus "ERV316A3_13q31.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2237"; repClass "LTR"; repEnd "5096"; repFamily "ERVL"; repLeft "4506"; repStart "-130"; ### ERVLE_13q31.3b ### chr13 rmsk gene 91367584 91368046 . - . gene_id "ERVLE_13q31.3b"; transcript_id "ERVLE_13q31.3b"; locus "ERVLE_13q31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2944"; model_cov "632"; model_pct "11.2"; chr13 rmsk exon 91367584 91368046 591 - . gene_id "ERVLE_13q31.3b"; transcript_id "ERVLE_13q31.3b"; locus "ERVLE_13q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2944"; repClass "LTR"; repEnd "4703"; repFamily "ERVL"; repLeft "4071"; repStart "-964"; ### ERVLE_13q31.3c ### chr13 rmsk gene 91480806 91483631 . - . gene_id "ERVLE_13q31.3c"; transcript_id "ERVLE_13q31.3c"; locus "ERVLE_13q31.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2945"; model_cov "1032"; model_pct "18.2"; chr13 rmsk exon 91480806 91481007 411 - . gene_id "ERVLE_13q31.3c"; transcript_id "ERVLE_13q31.3c"; locus "ERVLE_13q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2945"; repClass "LTR"; repEnd "4974"; repFamily "ERVL"; repLeft "4760"; repStart "-693"; chr13 rmsk exon 91481516 91481766 384 - . gene_id "ERVLE_13q31.3c"; transcript_id "ERVLE_13q31.3c"; locus "ERVLE_13q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2945"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "3282"; repStart "-2126"; chr13 rmsk exon 91483093 91483631 635 - . gene_id "ERVLE_13q31.3c"; transcript_id "ERVLE_13q31.3c"; locus "ERVLE_13q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2945"; repClass "LTR"; repEnd "1887"; repFamily "ERVL"; repLeft "1328"; repStart "-3780"; ### ERVLE_13q31.3d ### chr13 rmsk gene 91559089 91561748 . + . gene_id "ERVLE_13q31.3d"; transcript_id "ERVLE_13q31.3d"; locus "ERVLE_13q31.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2946"; model_cov "2536"; model_pct "44.8"; chr13 rmsk exon 91559089 91560608 2655 + . gene_id "ERVLE_13q31.3d"; transcript_id "ERVLE_13q31.3d"; locus "ERVLE_13q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2946"; repClass "LTR"; repEnd "1604"; repFamily "ERVL"; repLeft "-4063"; repStart "41"; chr13 rmsk exon 91560774 91561643 1898 + . gene_id "ERVLE_13q31.3d"; transcript_id "ERVLE_13q31.3d"; locus "ERVLE_13q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2946"; repClass "LTR"; repEnd "2550"; repFamily "ERVL"; repLeft "-3117"; repStart "1670"; chr13 rmsk exon 91561646 91561748 332 + . gene_id "ERVLE_13q31.3d"; transcript_id "ERVLE_13q31.3d"; locus "ERVLE_13q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2946"; repClass "LTR"; repEnd "2370"; repFamily "ERVL"; repLeft "-3297"; repStart "2277"; ### ERVLE_13q31.3e ### chr13 rmsk gene 91729993 91731453 . - . gene_id "ERVLE_13q31.3e"; transcript_id "ERVLE_13q31.3e"; locus "ERVLE_13q31.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2948"; model_cov "1235"; model_pct "21.8"; chr13 rmsk exon 91729993 91730580 1443 - . gene_id "ERVLE_13q31.3e"; transcript_id "ERVLE_13q31.3e"; locus "ERVLE_13q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2948"; repClass "LTR"; repEnd "3855"; repFamily "ERVL"; repLeft "3241"; repStart "-1812"; chr13 rmsk exon 91730693 91730915 375 - . gene_id "ERVLE_13q31.3e"; transcript_id "ERVLE_13q31.3e"; locus "ERVLE_13q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2948"; repClass "LTR"; repEnd "3105"; repFamily "ERVL"; repLeft "2866"; repStart "-2562"; chr13 rmsk exon 91731085 91731453 1226 - . gene_id "ERVLE_13q31.3e"; transcript_id "ERVLE_13q31.3e"; locus "ERVLE_13q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2948"; repClass "LTR"; repEnd "2570"; repFamily "ERVL"; repLeft "2188"; repStart "-3097"; ### ERVLE_13q31.3f ### chr13 rmsk gene 91734300 91734745 . - . gene_id "ERVLE_13q31.3f"; transcript_id "ERVLE_13q31.3f"; locus "ERVLE_13q31.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2949"; model_cov "566"; model_pct "10.0"; chr13 rmsk exon 91734300 91734745 793 - . gene_id "ERVLE_13q31.3f"; transcript_id "ERVLE_13q31.3f"; locus "ERVLE_13q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2949"; repClass "LTR"; repEnd "2149"; repFamily "ERVL"; repLeft "1583"; repStart "-3518"; ### ERVLE_13q31.3g ### chr13 rmsk gene 91791882 91792848 . - . gene_id "ERVLE_13q31.3g"; transcript_id "ERVLE_13q31.3g"; locus "ERVLE_13q31.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2950"; model_cov "1083"; model_pct "19.1"; chr13 rmsk exon 91791882 91792848 2126 - . gene_id "ERVLE_13q31.3g"; transcript_id "ERVLE_13q31.3g"; locus "ERVLE_13q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2950"; repClass "LTR"; repEnd "5377"; repFamily "ERVL"; repLeft "4294"; repStart "-290"; ### HML1_13q31.3a ### chr13 rmsk gene 93039395 93040549 . + . gene_id "HML1_13q31.3a"; transcript_id "HML1_13q31.3a"; locus "HML1_13q31.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0096"; model_cov "766"; model_pct "12.6"; chr13 rmsk exon 93039395 93039440 272 + . gene_id "HML1_13q31.3a"; transcript_id "HML1_13q31.3a"; locus "HML1_13q31.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0096"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "-562"; repStart "3"; chr13 rmsk exon 93039429 93039797 2032 + . gene_id "HML1_13q31.3a"; transcript_id "HML1_13q31.3a"; locus "HML1_13q31.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0096"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; chr13 rmsk exon 93039798 93040549 5538 + . gene_id "HML1_13q31.3a"; transcript_id "HML1_13q31.3a"; locus "HML1_13q31.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0096"; repClass "LTR"; repEnd "767"; repFamily "ERVK"; repLeft "-5329"; repStart "1"; ### HERVW_13q31.3 ### chr13 rmsk gene 93040813 93043481 . + . gene_id "HERVW_13q31.3"; transcript_id "HERVW_13q31.3"; locus "HERVW_13q31.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0246"; model_cov "2724"; model_pct "31.6"; chr13 rmsk exon 93040813 93042006 9257 + . gene_id "HERVW_13q31.3"; transcript_id "HERVW_13q31.3"; locus "HERVW_13q31.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0246"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-6612"; repStart "830"; chr13 rmsk exon 93041992 93043432 10771 + . gene_id "HERVW_13q31.3"; transcript_id "HERVW_13q31.3"; locus "HERVW_13q31.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0246"; repClass "LTR"; repEnd "7175"; repFamily "ERV1"; repLeft "-1451"; repStart "5682"; chr13 rmsk exon 93043434 93043481 303 + . gene_id "HERVW_13q31.3"; transcript_id "HERVW_13q31.3"; locus "HERVW_13q31.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0246"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "434"; ### HML1_13q31.3b ### chr13 rmsk gene 93043469 93044777 . + . gene_id "HML1_13q31.3b"; transcript_id "HML1_13q31.3b"; locus "HML1_13q31.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0097"; model_cov "1060"; model_pct "17.4"; chr13 rmsk exon 93043469 93044374 4027 + . gene_id "HML1_13q31.3b"; transcript_id "HML1_13q31.3b"; locus "HML1_13q31.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0097"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5036"; chr13 rmsk exon 93044378 93044423 303 + . gene_id "HML1_13q31.3b"; transcript_id "HML1_13q31.3b"; locus "HML1_13q31.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0097"; repClass "LTR"; repEnd "45"; repFamily "ERVK"; repLeft "-563"; repStart "1"; chr13 rmsk exon 93044413 93044777 2027 + . gene_id "HML1_13q31.3b"; transcript_id "HML1_13q31.3b"; locus "HML1_13q31.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0097"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "211"; ### ERVLB4_13q31.3 ### chr13 rmsk gene 93098531 93101508 . - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1408"; model_cov "1114"; model_pct "19.5"; chr13 rmsk exon 93098531 93098873 1215 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-34"; repStart "0"; chr13 rmsk exon 93099423 93099543 624 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "-17"; repFamily "ERVL"; repLeft "-141"; repStart "-431"; chr13 rmsk exon 93099544 93099615 439 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5642"; repStart "0"; chr13 rmsk exon 93099800 93100326 3670 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "543"; repStart "-4645"; chr13 rmsk exon 93100708 93101217 3670 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "1"; repStart "-5197"; chr13 rmsk exon 93101227 93101508 928 - . gene_id "ERVLB4_13q31.3"; transcript_id "ERVLB4_13q31.3"; locus "ERVLB4_13q31.3"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1408"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "135"; repStart "-5"; ### ERV316A3_13q32.1a ### chr13 rmsk gene 94569687 94573776 . + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2238"; model_cov "2313"; model_pct "44.3"; chr13 rmsk exon 94569687 94570132 1031 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr13 rmsk exon 94570250 94570491 632 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "95"; chr13 rmsk exon 94570905 94571061 429 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "2293"; repFamily "ERVL"; repLeft "-2933"; repStart "2134"; chr13 rmsk exon 94571459 94572353 5983 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "3207"; repFamily "ERVL"; repLeft "-2019"; repStart "2290"; chr13 rmsk exon 94572724 94573689 5983 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "-1029"; repStart "3208"; chr13 rmsk exon 94573690 94573776 235 + . gene_id "ERV316A3_13q32.1a"; transcript_id "ERV316A3_13q32.1a"; locus "ERV316A3_13q32.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2238"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "308"; ### ERVLE_13q32.1a ### chr13 rmsk gene 95381535 95382836 . + . gene_id "ERVLE_13q32.1a"; transcript_id "ERVLE_13q32.1a"; locus "ERVLE_13q32.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2951"; model_cov "759"; model_pct "13.4"; chr13 rmsk exon 95381535 95381727 1176 + . gene_id "ERVLE_13q32.1a"; transcript_id "ERVLE_13q32.1a"; locus "ERVLE_13q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2951"; repClass "LTR"; repEnd "4774"; repFamily "ERVL"; repLeft "-893"; repStart "4568"; chr13 rmsk exon 95382041 95382299 1176 + . gene_id "ERVLE_13q32.1a"; transcript_id "ERVLE_13q32.1a"; locus "ERVLE_13q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2951"; repClass "LTR"; repEnd "5022"; repFamily "ERVL"; repLeft "-645"; repStart "4775"; chr13 rmsk exon 95382539 95382836 1176 + . gene_id "ERVLE_13q32.1a"; transcript_id "ERVLE_13q32.1a"; locus "ERVLE_13q32.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2951"; repClass "LTR"; repEnd "5329"; repFamily "ERVL"; repLeft "-338"; repStart "5023"; ### ERVLE_13q32.1b ### chr13 rmsk gene 95702361 95706904 . - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2953"; model_cov "2854"; model_pct "50.4"; chr13 rmsk exon 95702361 95702432 4483 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "5658"; repFamily "ERVL"; repLeft "5582"; repStart "-9"; chr13 rmsk exon 95702787 95703021 4483 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "5581"; repFamily "ERVL"; repLeft "5329"; repStart "-86"; chr13 rmsk exon 95703665 95704851 4483 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "5328"; repFamily "ERVL"; repLeft "4109"; repStart "-339"; chr13 rmsk exon 95705152 95705306 4483 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "4108"; repFamily "ERVL"; repLeft "3954"; repStart "-1559"; chr13 rmsk exon 95705317 95705520 768 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "1464"; repFamily "ERVL"; repLeft "1276"; repStart "-4203"; chr13 rmsk exon 95705839 95706142 768 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "1355"; repFamily "ERVL"; repLeft "1090"; repStart "-4312"; chr13 rmsk exon 95706337 95706904 1101 - . gene_id "ERVLE_13q32.1b"; transcript_id "ERVLE_13q32.1b"; locus "ERVLE_13q32.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2953"; repClass "LTR"; repEnd "1037"; repFamily "ERVL"; repLeft "337"; repStart "-4630"; ### ERV316A3_13q32.1b ### chr13 rmsk gene 95850245 95851184 . + . gene_id "ERV316A3_13q32.1b"; transcript_id "ERV316A3_13q32.1b"; locus "ERV316A3_13q32.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2239"; model_cov "684"; model_pct "13.1"; chr13 rmsk exon 95850245 95850889 2154 + . gene_id "ERV316A3_13q32.1b"; transcript_id "ERV316A3_13q32.1b"; locus "ERV316A3_13q32.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2239"; repClass "LTR"; repEnd "4280"; repFamily "ERVL"; repLeft "-946"; repStart "3596"; chr13 rmsk exon 95850890 95851184 1229 + . gene_id "ERV316A3_13q32.1b"; transcript_id "ERV316A3_13q32.1b"; locus "ERV316A3_13q32.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2239"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "129"; ### HERVL40_13q32.1 ### chr13 rmsk gene 96019147 96021285 . - . gene_id "HERVL40_13q32.1"; transcript_id "HERVL40_13q32.1"; locus "HERVL40_13q32.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0364"; model_cov "715"; model_pct "12.9"; chr13 rmsk exon 96019147 96019555 1489 - . gene_id "HERVL40_13q32.1"; transcript_id "HERVL40_13q32.1"; locus "HERVL40_13q32.1"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0364"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "49"; repStart "0"; chr13 rmsk exon 96019572 96020286 2124 - . gene_id "HERVL40_13q32.1"; transcript_id "HERVL40_13q32.1"; locus "HERVL40_13q32.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0364"; repClass "LTR"; repEnd "3396"; repFamily "ERVL"; repLeft "2681"; repStart "-2134"; chr13 rmsk exon 96020828 96021285 1729 - . gene_id "HERVL40_13q32.1"; transcript_id "HERVL40_13q32.1"; locus "HERVL40_13q32.1"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0364"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "1"; repStart "-9"; ### HUERSP3_13q32.1 ### chr13 rmsk gene 96966355 96971199 . + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0166"; model_cov "3533"; model_pct "39.6"; chr13 rmsk exon 96966355 96966964 3554 + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0166"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 96966965 96967453 2129 + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0166"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "-8404"; repStart "1"; chr13 rmsk exon 96967578 96968808 6134 + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0166"; repClass "LTR"; repEnd "2011"; repFamily "ERV1"; repLeft "-6908"; repStart "743"; chr13 rmsk exon 96968835 96970577 10129 + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0166"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "-4"; repStart "7164"; chr13 rmsk exon 96970581 96971199 3928 + . gene_id "HUERSP3_13q32.1"; transcript_id "HUERSP3_13q32.1"; locus "HUERSP3_13q32.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0166"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_13q32.1c ### chr13 rmsk gene 97174990 97176483 . + . gene_id "ERV316A3_13q32.1c"; transcript_id "ERV316A3_13q32.1c"; locus "ERV316A3_13q32.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2240"; model_cov "1130"; model_pct "21.6"; chr13 rmsk exon 97174990 97175390 1475 + . gene_id "ERV316A3_13q32.1c"; transcript_id "ERV316A3_13q32.1c"; locus "ERV316A3_13q32.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2240"; repClass "LTR"; repEnd "477"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr13 rmsk exon 97175395 97176483 2225 + . gene_id "ERV316A3_13q32.1c"; transcript_id "ERV316A3_13q32.1c"; locus "ERV316A3_13q32.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2240"; repClass "LTR"; repEnd "1133"; repFamily "ERVL"; repLeft "-4093"; repStart "3"; ### HERVL_13q32.2 ### chr13 rmsk gene 97587408 97592979 . - . gene_id "HERVL_13q32.2"; transcript_id "HERVL_13q32.2"; locus "HERVL_13q32.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1058"; model_cov "5186"; model_pct "91.7"; chr13 rmsk exon 97587408 97587840 3074 - . gene_id "HERVL_13q32.2"; transcript_id "HERVL_13q32.2"; locus "HERVL_13q32.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1058"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 97587841 97592979 41173 - . gene_id "HERVL_13q32.2"; transcript_id "HERVL_13q32.2"; locus "HERVL_13q32.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1058"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "468"; repStart "0"; ### HERVH_13q32.2 ### chr13 rmsk gene 97642318 97648209 . + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1004"; model_cov "5115"; model_pct "66.3"; chr13 rmsk exon 97642318 97642715 2611 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 97642716 97645725 21960 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr13 rmsk exon 97645712 97646546 6127 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr13 rmsk exon 97646549 97647211 4574 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr13 rmsk exon 97647213 97647429 1358 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr13 rmsk exon 97647428 97647806 2349 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 97647807 97648209 2650 + . gene_id "HERVH_13q32.2"; transcript_id "HERVH_13q32.2"; locus "HERVH_13q32.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1004"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_13q32.2 ### chr13 rmsk gene 97713044 97716411 . + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0226"; model_cov "2528"; model_pct "47.2"; chr13 rmsk exon 97713044 97713289 596 + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0226"; repClass "LTR"; repEnd "-584"; repFamily "ERV1"; repLeft "-5940"; repStart "-828"; chr13 rmsk exon 97713452 97713992 1200 + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0226"; repClass "LTR"; repEnd "1802"; repFamily "ERV1"; repLeft "-3554"; repStart "1244"; chr13 rmsk exon 97714409 97714508 411 + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0226"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-305"; repStart "132"; chr13 rmsk exon 97714511 97714564 271 + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0226"; repClass "LTR"; repEnd "537"; repFamily "ERV1"; repLeft "-5"; repStart "478"; chr13 rmsk exon 97714578 97716411 4372 + . gene_id "MER34B_13q32.2"; transcript_id "MER34B_13q32.2"; locus "MER34B_13q32.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0226"; repClass "LTR"; repEnd "3078"; repFamily "ERV1"; repLeft "-2278"; repStart "1352"; ### ERVLE_13q32.2 ### chr13 rmsk gene 97768010 97773503 . - . gene_id "ERVLE_13q32.2"; transcript_id "ERVLE_13q32.2"; locus "ERVLE_13q32.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2954"; model_cov "5564"; model_pct "98.2"; chr13 rmsk exon 97768010 97768154 602 - . gene_id "ERVLE_13q32.2"; transcript_id "ERVLE_13q32.2"; locus "ERVLE_13q32.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2954"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "5520"; repStart "-2"; chr13 rmsk exon 97768180 97773503 25623 - . gene_id "ERVLE_13q32.2"; transcript_id "ERVLE_13q32.2"; locus "ERVLE_13q32.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2954"; repClass "LTR"; repEnd "5424"; repFamily "ERVL"; repLeft "5"; repStart "-243"; ### ERVLB4_13q32.2 ### chr13 rmsk gene 98497985 98498600 . + . gene_id "ERVLB4_13q32.2"; transcript_id "ERVLB4_13q32.2"; locus "ERVLB4_13q32.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1409"; model_cov "666"; model_pct "11.7"; chr13 rmsk exon 98497985 98498600 2772 + . gene_id "ERVLB4_13q32.2"; transcript_id "ERVLB4_13q32.2"; locus "ERVLB4_13q32.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1409"; repClass "LTR"; repEnd "668"; repFamily "ERVL"; repLeft "-5046"; repStart "2"; ### HERV3_13q32.3 ### chr13 rmsk gene 98759857 98768316 . + . gene_id "HERV3_13q32.3"; transcript_id "HERV3_13q32.3"; locus "HERV3_13q32.3"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0052"; model_cov "6549"; model_pct "77.7"; chr13 rmsk exon 98759857 98760037 1901 + . gene_id "HERV3_13q32.3"; transcript_id "HERV3_13q32.3"; locus "HERV3_13q32.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0052"; repClass "LTR"; repEnd "223"; repFamily "ERV1"; repLeft "-336"; repStart "1"; chr13 rmsk exon 98760349 98760717 1901 + . gene_id "HERV3_13q32.3"; transcript_id "HERV3_13q32.3"; locus "HERV3_13q32.3"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0052"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "224"; chr13 rmsk exon 98760718 98764337 36586 + . gene_id "HERV3_13q32.3"; transcript_id "HERV3_13q32.3"; locus "HERV3_13q32.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0052"; repClass "LTR"; repEnd "3554"; repFamily "ERV1"; repLeft "-4872"; repStart "2"; chr13 rmsk exon 98765352 98768316 36586 + . gene_id "HERV3_13q32.3"; transcript_id "HERV3_13q32.3"; locus "HERV3_13q32.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0052"; repClass "LTR"; repEnd "6552"; repFamily "ERV1"; repLeft "-1874"; repStart "3555"; ### ERVLE_13q32.3 ### chr13 rmsk gene 99027851 99028912 . + . gene_id "ERVLE_13q32.3"; transcript_id "ERVLE_13q32.3"; locus "ERVLE_13q32.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2955"; model_cov "1138"; model_pct "20.1"; chr13 rmsk exon 99027851 99028912 1366 + . gene_id "ERVLE_13q32.3"; transcript_id "ERVLE_13q32.3"; locus "ERVLE_13q32.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2955"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4529"; ### MER4B_13q32.3 ### chr13 rmsk gene 99138272 99140104 . - . gene_id "MER4B_13q32.3"; transcript_id "MER4B_13q32.3"; locus "MER4B_13q32.3"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0353"; model_cov "1191"; model_pct "17.6"; chr13 rmsk exon 99138272 99138532 1678 - . gene_id "MER4B_13q32.3"; transcript_id "MER4B_13q32.3"; locus "MER4B_13q32.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0353"; repClass "LTR"; repEnd "282"; repFamily "ERV1"; repLeft "1"; repStart "-328"; chr13 rmsk exon 99138533 99138945 2438 - . gene_id "MER4B_13q32.3"; transcript_id "MER4B_13q32.3"; locus "MER4B_13q32.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0353"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6365"; repStart "0"; chr13 rmsk exon 99139302 99140057 4489 - . gene_id "MER4B_13q32.3"; transcript_id "MER4B_13q32.3"; locus "MER4B_13q32.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0353"; repClass "LTR"; repEnd "6331"; repFamily "ERV1"; repLeft "5582"; repStart "-427"; chr13 rmsk exon 99140055 99140104 401 - . gene_id "MER4B_13q32.3"; transcript_id "MER4B_13q32.3"; locus "MER4B_13q32.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0353"; repClass "LTR"; repEnd "3974"; repFamily "ERV1"; repLeft "3925"; repStart "-2784"; ### MER4_13q32.3a ### chr13 rmsk gene 99180738 99187756 . - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0636"; model_cov "4288"; model_pct "65.0"; chr13 rmsk exon 99180738 99181178 3158 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0636"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 99181494 99183480 15993 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4559"; repStart "-2"; chr13 rmsk exon 99183786 99184956 15993 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "4558"; repFamily "ERV1"; repLeft "3882"; repStart "-2040"; chr13 rmsk exon 99185200 99185890 4151 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1774"; repStart "-4103"; chr13 rmsk exon 99186183 99186517 1443 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "1005"; repStart "-5314"; chr13 rmsk exon 99186527 99186647 2933 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "577"; repFamily "ERV1"; repLeft "425"; repStart "-6021"; chr13 rmsk exon 99186958 99187363 2933 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0636"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "1"; repStart "-6174"; chr13 rmsk exon 99187367 99187756 2714 - . gene_id "MER4_13q32.3a"; transcript_id "MER4_13q32.3a"; locus "MER4_13q32.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0636"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "80"; repStart "0"; ### ERV316A3_13q32.3 ### chr13 rmsk gene 99342075 99343200 . - . gene_id "ERV316A3_13q32.3"; transcript_id "ERV316A3_13q32.3"; locus "ERV316A3_13q32.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2241"; model_cov "719"; model_pct "13.8"; chr13 rmsk exon 99342075 99342256 507 - . gene_id "ERV316A3_13q32.3"; transcript_id "ERV316A3_13q32.3"; locus "ERV316A3_13q32.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2241"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "223"; repStart "-29"; chr13 rmsk exon 99342417 99342607 295 - . gene_id "ERV316A3_13q32.3"; transcript_id "ERV316A3_13q32.3"; locus "ERV316A3_13q32.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2241"; repClass "LTR"; repEnd "4127"; repFamily "ERVL"; repLeft "3909"; repStart "-1099"; chr13 rmsk exon 99342732 99343200 747 - . gene_id "ERV316A3_13q32.3"; transcript_id "ERV316A3_13q32.3"; locus "ERV316A3_13q32.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2241"; repClass "LTR"; repEnd "3702"; repFamily "ERVL"; repLeft "3201"; repStart "-1524"; ### MER4_13q32.3b ### chr13 rmsk gene 99475470 99479977 . + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0637"; model_cov "3559"; model_pct "53.9"; chr13 rmsk exon 99475470 99475915 3202 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0637"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 99475921 99476913 4593 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "1155"; repFamily "ERV1"; repLeft "-5443"; repStart "1"; chr13 rmsk exon 99477392 99477942 2634 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "1674"; repFamily "ERV1"; repLeft "-4924"; repStart "1112"; chr13 rmsk exon 99477939 99478110 1285 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2323"; chr13 rmsk exon 99478332 99478578 2761 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "2968"; repFamily "ERV1"; repLeft "-3630"; repStart "2737"; chr13 rmsk exon 99478875 99478885 2761 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "2977"; repFamily "ERV1"; repLeft "-3621"; repStart "2969"; chr13 rmsk exon 99479181 99479977 3048 + . gene_id "MER4_13q32.3b"; transcript_id "MER4_13q32.3b"; locus "MER4_13q32.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0637"; repClass "LTR"; repEnd "4410"; repFamily "ERV1"; repLeft "-2188"; repStart "2978"; ### HERV4_13q32.3 ### chr13 rmsk gene 99486866 99497078 . - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0105"; model_cov "6542"; model_pct "100.0"; chr13 rmsk exon 99486866 99487576 4103 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 99487577 99491432 29029 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "2707"; repStart "0"; chr13 rmsk exon 99492303 99494263 16023 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "2715"; repFamily "ERV1"; repLeft "758"; repStart "-3824"; chr13 rmsk exon 99495348 99496147 16023 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "757"; repFamily "ERV1"; repLeft "4"; repStart "-5782"; chr13 rmsk exon 99496165 99496489 1582 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "626"; repFamily "ERV1"; repLeft "279"; repStart "-8"; chr13 rmsk exon 99496492 99497078 3482 - . gene_id "HERV4_13q32.3"; transcript_id "HERV4_13q32.3"; locus "HERV4_13q32.3"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0105"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "3"; repStart "-16"; ### MER61_13q32.3 ### chr13 rmsk gene 100403605 100409632 . - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0311"; model_cov "4593"; model_pct "88.0"; chr13 rmsk exon 100403605 100403932 1882 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0311"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 100403933 100405766 24720 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0311"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "3345"; repStart "0"; chr13 rmsk exon 100406061 100406422 24720 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0311"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "2984"; repStart "-1873"; chr13 rmsk exon 100406729 100407868 24720 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0311"; repClass "LTR"; repEnd "2983"; repFamily "ERV1"; repLeft "1843"; repStart "-2234"; chr13 rmsk exon 100408167 100408634 24720 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0311"; repClass "LTR"; repEnd "1842"; repFamily "ERV1"; repLeft "1320"; repStart "-3375"; chr13 rmsk exon 100408674 100409319 2302 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0311"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "1"; repStart "-4517"; chr13 rmsk exon 100409322 100409632 1490 - . gene_id "MER61_13q32.3"; transcript_id "MER61_13q32.3"; locus "MER61_13q32.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0311"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVFH19_13q33.1 ### chr13 rmsk gene 101221416 101226483 . + . gene_id "HERVFH19_13q33.1"; transcript_id "HERVFH19_13q33.1"; locus "HERVFH19_13q33.1"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0035"; model_cov "4661"; model_pct "60.4"; chr13 rmsk exon 101221416 101226066 35695 + . gene_id "HERVFH19_13q33.1"; transcript_id "HERVFH19_13q33.1"; locus "HERVFH19_13q33.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0035"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "3058"; chr13 rmsk exon 101226067 101226483 2063 + . gene_id "HERVFH19_13q33.1"; transcript_id "HERVFH19_13q33.1"; locus "HERVFH19_13q33.1"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0035"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_13q33.1 ### chr13 rmsk gene 101667249 101667821 . + . gene_id "LTR57_13q33.1"; transcript_id "LTR57_13q33.1"; locus "LTR57_13q33.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0140"; model_cov "535"; model_pct "10.0"; chr13 rmsk exon 101667249 101667821 1100 + . gene_id "LTR57_13q33.1"; transcript_id "LTR57_13q33.1"; locus "LTR57_13q33.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0140"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-4380"; repStart "428"; ### HML5_13q33.1 ### chr13 rmsk gene 102667824 102672563 . - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0096"; model_cov "3608"; model_pct "52.8"; chr13 rmsk exon 102667824 102668345 2970 - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0096"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr13 rmsk exon 102668346 102671524 22091 - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0096"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2314"; repStart "-1502"; chr13 rmsk exon 102671523 102671814 2160 - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0096"; repClass "LTR"; repEnd "777"; repFamily "ERVK"; repLeft "486"; repStart "-6060"; chr13 rmsk exon 102671813 102672095 2163 - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0096"; repClass "LTR"; repEnd "297"; repFamily "ERVK"; repLeft "1"; repStart "-6540"; chr13 rmsk exon 102672096 102672563 2805 - . gene_id "HML5_13q33.1"; transcript_id "HML5_13q33.1"; locus "HML5_13q33.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0096"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "8"; repStart "0"; ### HERVL40_13q33.1 ### chr13 rmsk gene 102709608 102711111 . + . gene_id "HERVL40_13q33.1"; transcript_id "HERVL40_13q33.1"; locus "HERVL40_13q33.1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0365"; model_cov "1604"; model_pct "29.0"; chr13 rmsk exon 102709608 102709737 493 + . gene_id "HERVL40_13q33.1"; transcript_id "HERVL40_13q33.1"; locus "HERVL40_13q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0365"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-3920"; repStart "1477"; chr13 rmsk exon 102709728 102710942 3759 + . gene_id "HERVL40_13q33.1"; transcript_id "HERVL40_13q33.1"; locus "HERVL40_13q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0365"; repClass "LTR"; repEnd "3814"; repFamily "ERVL"; repLeft "-1716"; repStart "2511"; chr13 rmsk exon 102710960 102711111 505 + . gene_id "HERVL40_13q33.1"; transcript_id "HERVL40_13q33.1"; locus "HERVL40_13q33.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0365"; repClass "LTR"; repEnd "4054"; repFamily "ERVL"; repLeft "-1476"; repStart "3886"; ### HUERSP2_13q33.1 ### chr13 rmsk gene 103249990 103252564 . - . gene_id "HUERSP2_13q33.1"; transcript_id "HUERSP2_13q33.1"; locus "HUERSP2_13q33.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0108"; model_cov "1608"; model_pct "52.1"; chr13 rmsk exon 103249990 103250073 462 - . gene_id "HUERSP2_13q33.1"; transcript_id "HUERSP2_13q33.1"; locus "HUERSP2_13q33.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0108"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "551"; repStart "-198"; chr13 rmsk exon 103250187 103251609 7308 - . gene_id "HUERSP2_13q33.1"; transcript_id "HUERSP2_13q33.1"; locus "HUERSP2_13q33.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0108"; repClass "LTR"; repEnd "1703"; repFamily "ERV1"; repLeft "220"; repStart "-1385"; chr13 rmsk exon 103251645 103251771 426 - . gene_id "HUERSP2_13q33.1"; transcript_id "HUERSP2_13q33.1"; locus "HUERSP2_13q33.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0108"; repClass "LTR"; repEnd "126"; repFamily "ERV1"; repLeft "1"; repStart "-2962"; chr13 rmsk exon 103251772 103252564 4665 - . gene_id "HUERSP2_13q33.1"; transcript_id "HUERSP2_13q33.1"; locus "HUERSP2_13q33.1"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0108"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "44"; repStart "0"; ### HERVL_13q33.1a ### chr13 rmsk gene 103470762 103472308 . - . gene_id "HERVL_13q33.1a"; transcript_id "HERVL_13q33.1a"; locus "HERVL_13q33.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1059"; model_cov "949"; model_pct "16.8"; chr13 rmsk exon 103470762 103471313 2087 - . gene_id "HERVL_13q33.1a"; transcript_id "HERVL_13q33.1a"; locus "HERVL_13q33.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1059"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-98"; repStart "0"; chr13 rmsk exon 103471316 103472308 6311 - . gene_id "HERVL_13q33.1a"; transcript_id "HERVL_13q33.1a"; locus "HERVL_13q33.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1059"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4705"; repStart "0"; ### HERVL_13q33.1b ### chr13 rmsk gene 104036420 104037745 . - . gene_id "HERVL_13q33.1b"; transcript_id "HERVL_13q33.1b"; locus "HERVL_13q33.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1061"; model_cov "891"; model_pct "15.8"; chr13 rmsk exon 104036420 104036849 3085 - . gene_id "HERVL_13q33.1b"; transcript_id "HERVL_13q33.1b"; locus "HERVL_13q33.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1061"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr13 rmsk exon 104036852 104037745 6624 - . gene_id "HERVL_13q33.1b"; transcript_id "HERVL_13q33.1b"; locus "HERVL_13q33.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1061"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4763"; repStart "0"; ### HERVH_13q33.2 ### chr13 rmsk gene 104207593 104213824 . - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1005"; model_cov "5435"; model_pct "70.5"; chr13 rmsk exon 104207593 104207997 2752 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 104207998 104208374 2306 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr13 rmsk exon 104208375 104208611 1402 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr13 rmsk exon 104208592 104210303 7569 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr13 rmsk exon 104210294 104210443 971 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr13 rmsk exon 104210423 104213419 18876 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr13 rmsk exon 104213422 104213824 2697 - . gene_id "HERVH_13q33.2"; transcript_id "HERVH_13q33.2"; locus "HERVH_13q33.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1005"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_13q33.2 ### chr13 rmsk gene 104823722 104826982 . - . gene_id "ERV316A3_13q33.2"; transcript_id "ERV316A3_13q33.2"; locus "ERV316A3_13q33.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2243"; model_cov "3087"; model_pct "59.1"; chr13 rmsk exon 104823722 104824109 723 - . gene_id "ERV316A3_13q33.2"; transcript_id "ERV316A3_13q33.2"; locus "ERV316A3_13q33.2"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2243"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chr13 rmsk exon 104824131 104826490 4522 - . gene_id "ERV316A3_13q33.2"; transcript_id "ERV316A3_13q33.2"; locus "ERV316A3_13q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2243"; repClass "LTR"; repEnd "5204"; repFamily "ERVL"; repLeft "2682"; repStart "-22"; chr13 rmsk exon 104826508 104826982 688 - . gene_id "ERV316A3_13q33.2"; transcript_id "ERV316A3_13q33.2"; locus "ERV316A3_13q33.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2243"; repClass "LTR"; repEnd "2628"; repFamily "ERVL"; repLeft "2063"; repStart "-2598"; ### ERVLE_13q33.2a ### chr13 rmsk gene 104862849 104864015 . - . gene_id "ERVLE_13q33.2a"; transcript_id "ERVLE_13q33.2a"; locus "ERVLE_13q33.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2957"; model_cov "1345"; model_pct "23.7"; chr13 rmsk exon 104862849 104863688 1406 - . gene_id "ERVLE_13q33.2a"; transcript_id "ERVLE_13q33.2a"; locus "ERVLE_13q33.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2957"; repClass "LTR"; repEnd "5075"; repFamily "ERVL"; repLeft "4054"; repStart "-592"; chr13 rmsk exon 104863700 104864015 1199 - . gene_id "ERVLE_13q33.2a"; transcript_id "ERVLE_13q33.2a"; locus "ERVLE_13q33.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2957"; repClass "LTR"; repEnd "3860"; repFamily "ERVL"; repLeft "3536"; repStart "-1807"; ### ERVLE_13q33.2b ### chr13 rmsk gene 104877767 104878849 . + . gene_id "ERVLE_13q33.2b"; transcript_id "ERVLE_13q33.2b"; locus "ERVLE_13q33.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2958"; model_cov "877"; model_pct "15.5"; chr13 rmsk exon 104877767 104877940 274 + . gene_id "ERVLE_13q33.2b"; transcript_id "ERVLE_13q33.2b"; locus "ERVLE_13q33.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2958"; repClass "LTR"; repEnd "1744"; repFamily "ERVL"; repLeft "-3923"; repStart "1567"; chr13 rmsk exon 104878178 104878849 1309 + . gene_id "ERVLE_13q33.2b"; transcript_id "ERVLE_13q33.2b"; locus "ERVLE_13q33.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2958"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "-2952"; repStart "2015"; ### ERVLE_13q33.2c ### chr13 rmsk gene 105131632 105132525 . - . gene_id "ERVLE_13q33.2c"; transcript_id "ERVLE_13q33.2c"; locus "ERVLE_13q33.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2959"; model_cov "915"; model_pct "16.1"; chr13 rmsk exon 105131632 105132525 1749 - . gene_id "ERVLE_13q33.2c"; transcript_id "ERVLE_13q33.2c"; locus "ERVLE_13q33.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2959"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "1780"; repStart "-2972"; ### ERVLB4_13q33.2 ### chr13 rmsk gene 105393263 105394130 . - . gene_id "ERVLB4_13q33.2"; transcript_id "ERVLB4_13q33.2"; locus "ERVLB4_13q33.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1411"; model_cov "915"; model_pct "16.0"; chr13 rmsk exon 105393263 105394130 4429 - . gene_id "ERVLB4_13q33.2"; transcript_id "ERVLB4_13q33.2"; locus "ERVLB4_13q33.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1411"; repClass "LTR"; repEnd "4705"; repFamily "ERVL"; repLeft "3790"; repStart "-1009"; ### ERVLB4_13q33.3 ### chr13 rmsk gene 106826623 106833691 . - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1413"; model_cov "5594"; model_pct "97.9"; chr13 rmsk exon 106826623 106826667 278 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "467"; repStart "-1"; chr13 rmsk exon 106826733 106826839 714 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "107"; repFamily "ERVL"; repLeft "1"; repStart "-408"; chr13 rmsk exon 106826842 106826923 270 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5641"; repStart "-2"; chr13 rmsk exon 106827036 106827702 27178 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "4854"; repStart "-188"; chr13 rmsk exon 106828004 106832141 27178 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "4853"; repFamily "ERVL"; repLeft "638"; repStart "-861"; chr13 rmsk exon 106832446 106833088 27178 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "637"; repFamily "ERVL"; repLeft "1"; repStart "-5077"; chr13 rmsk exon 106833265 106833691 1512 - . gene_id "ERVLB4_13q33.3"; transcript_id "ERVLB4_13q33.3"; locus "ERVLB4_13q33.3"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1413"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-39"; repStart "-53"; ### ERVLE_13q33.3a ### chr13 rmsk gene 107133714 107137041 . - . gene_id "ERVLE_13q33.3a"; transcript_id "ERVLE_13q33.3a"; locus "ERVLE_13q33.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2961"; model_cov "3244"; model_pct "57.2"; chr13 rmsk exon 107133714 107134042 1130 - . gene_id "ERVLE_13q33.3a"; transcript_id "ERVLE_13q33.3a"; locus "ERVLE_13q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2961"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3731"; repStart "-1594"; chr13 rmsk exon 107134145 107134310 414 - . gene_id "ERVLE_13q33.3a"; transcript_id "ERVLE_13q33.3a"; locus "ERVLE_13q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2961"; repClass "LTR"; repEnd "3584"; repFamily "ERVL"; repLeft "3410"; repStart "-2083"; chr13 rmsk exon 107134353 107134531 395 - . gene_id "ERVLE_13q33.3a"; transcript_id "ERVLE_13q33.3a"; locus "ERVLE_13q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2961"; repClass "LTR"; repEnd "3307"; repFamily "ERVL"; repLeft "3118"; repStart "-2360"; chr13 rmsk exon 107134608 107137041 2459 - . gene_id "ERVLE_13q33.3a"; transcript_id "ERVLE_13q33.3a"; locus "ERVLE_13q33.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2961"; repClass "LTR"; repEnd "3019"; repFamily "ERVL"; repLeft "480"; repStart "-2648"; ### HERV9_13q33.3 ### chr13 rmsk gene 107892019 107897630 . - . gene_id "HERV9_13q33.3"; transcript_id "HERV9_13q33.3"; locus "HERV9_13q33.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0155"; model_cov "4817"; model_pct "57.1"; chr13 rmsk exon 107892019 107896826 37975 - . gene_id "HERV9_13q33.3"; transcript_id "HERV9_13q33.3"; locus "HERV9_13q33.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0155"; repClass "LTR"; repEnd "4877"; repFamily "ERV1"; repLeft "60"; repStart "-3559"; chr13 rmsk exon 107896853 107897630 5912 - . gene_id "HERV9_13q33.3"; transcript_id "HERV9_13q33.3"; locus "HERV9_13q33.3"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0155"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_13q33.3b ### chr13 rmsk gene 107992407 107995799 . + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2962"; model_cov "2421"; model_pct "42.7"; chr13 rmsk exon 107992407 107992864 1558 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "1963"; repFamily "ERVL"; repLeft "-3704"; repStart "1500"; chr13 rmsk exon 107993238 107993747 1558 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "-3152"; repStart "1964"; chr13 rmsk exon 107993775 107993981 1270 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "2837"; repFamily "ERVL"; repLeft "-2830"; repStart "2634"; chr13 rmsk exon 107994353 107994740 1270 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "3224"; repFamily "ERVL"; repLeft "-2443"; repStart "2838"; chr13 rmsk exon 107994937 107995323 1092 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "3906"; repFamily "ERVL"; repLeft "-1761"; repStart "3496"; chr13 rmsk exon 107995388 107995799 1105 + . gene_id "ERVLE_13q33.3b"; transcript_id "ERVLE_13q33.3b"; locus "ERVLE_13q33.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2962"; repClass "LTR"; repEnd "4408"; repFamily "ERVL"; repLeft "-1259"; repStart "4000"; ### ERVLE_13q33.3c ### chr13 rmsk gene 108119698 108121730 . - . gene_id "ERVLE_13q33.3c"; transcript_id "ERVLE_13q33.3c"; locus "ERVLE_13q33.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2964"; model_cov "1384"; model_pct "24.4"; chr13 rmsk exon 108119698 108120214 2138 - . gene_id "ERVLE_13q33.3c"; transcript_id "ERVLE_13q33.3c"; locus "ERVLE_13q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2964"; repClass "LTR"; repEnd "5488"; repFamily "ERVL"; repLeft "4966"; repStart "-179"; chr13 rmsk exon 108120863 108121730 2138 - . gene_id "ERVLE_13q33.3c"; transcript_id "ERVLE_13q33.3c"; locus "ERVLE_13q33.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2964"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "4103"; repStart "-702"; ### HERVL_13q33.3 ### chr13 rmsk gene 109218916 109225445 . - . gene_id "HERVL_13q33.3"; transcript_id "HERVL_13q33.3"; locus "HERVL_13q33.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1062"; model_cov "5653"; model_pct "100.0"; chr13 rmsk exon 109218916 109219327 3035 - . gene_id "HERVL_13q33.3"; transcript_id "HERVL_13q33.3"; locus "HERVL_13q33.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1062"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-102"; repStart "-52"; chr13 rmsk exon 109219329 109224969 31200 - . gene_id "HERVL_13q33.3"; transcript_id "HERVL_13q33.3"; locus "HERVL_13q33.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1062"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr13 rmsk exon 109224970 109225004 3237 - . gene_id "HERVL_13q33.3"; transcript_id "HERVL_13q33.3"; locus "HERVL_13q33.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1062"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "410"; repStart "0"; chr13 rmsk exon 109225060 109225445 3237 - . gene_id "HERVL_13q33.3"; transcript_id "HERVL_13q33.3"; locus "HERVL_13q33.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1062"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "2"; repStart "-35"; ### ERVLE_13q33.3d ### chr13 rmsk gene 109236056 109238572 . + . gene_id "ERVLE_13q33.3d"; transcript_id "ERVLE_13q33.3d"; locus "ERVLE_13q33.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2966"; model_cov "1466"; model_pct "25.9"; chr13 rmsk exon 109236056 109236474 726 + . gene_id "ERVLE_13q33.3d"; transcript_id "ERVLE_13q33.3d"; locus "ERVLE_13q33.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2966"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "-5245"; repStart "4"; chr13 rmsk exon 109237569 109238572 1755 + . gene_id "ERVLE_13q33.3d"; transcript_id "ERVLE_13q33.3d"; locus "ERVLE_13q33.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2966"; repClass "LTR"; repEnd "4820"; repFamily "ERVL"; repLeft "-847"; repStart "3772"; ### HERVH_13q33.3 ### chr13 rmsk gene 109265090 109271116 . + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1006"; model_cov "4991"; model_pct "64.7"; chr13 rmsk exon 109265090 109265520 2750 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr13 rmsk exon 109265522 109269052 19196 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr13 rmsk exon 109269043 109269447 2698 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "3895"; repFamily "ERV1"; repLeft "-3818"; repStart "3492"; chr13 rmsk exon 109269433 109270085 3957 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4472"; chr13 rmsk exon 109270066 109270304 1340 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr13 rmsk exon 109270303 109270683 2569 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr13 rmsk exon 109270684 109271116 2889 + . gene_id "HERVH_13q33.3"; transcript_id "HERVH_13q33.3"; locus "HERVH_13q33.3"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1006"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_13q33.3e ### chr13 rmsk gene 109315443 109316147 . + . gene_id "ERVLE_13q33.3e"; transcript_id "ERVLE_13q33.3e"; locus "ERVLE_13q33.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2967"; model_cov "582"; model_pct "10.3"; chr13 rmsk exon 109315443 109315832 797 + . gene_id "ERVLE_13q33.3e"; transcript_id "ERVLE_13q33.3e"; locus "ERVLE_13q33.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2967"; repClass "LTR"; repEnd "2581"; repFamily "ERVL"; repLeft "-3086"; repStart "2190"; chr13 rmsk exon 109315963 109316147 731 + . gene_id "ERVLE_13q33.3e"; transcript_id "ERVLE_13q33.3e"; locus "ERVLE_13q33.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2967"; repClass "LTR"; repEnd "2956"; repFamily "ERVL"; repLeft "-2711"; repStart "2765"; ### ERVLE_13q33.3f ### chr13 rmsk gene 109323457 109325339 . + . gene_id "ERVLE_13q33.3f"; transcript_id "ERVLE_13q33.3f"; locus "ERVLE_13q33.3f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2968"; model_cov "1478"; model_pct "26.1"; chr13 rmsk exon 109323457 109323586 553 + . gene_id "ERVLE_13q33.3f"; transcript_id "ERVLE_13q33.3f"; locus "ERVLE_13q33.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2968"; repClass "LTR"; repEnd "4203"; repFamily "ERVL"; repLeft "-1464"; repStart "4068"; chr13 rmsk exon 109323640 109324947 4111 + . gene_id "ERVLE_13q33.3f"; transcript_id "ERVLE_13q33.3f"; locus "ERVLE_13q33.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2968"; repClass "LTR"; repEnd "5660"; repFamily "ERVL"; repLeft "-7"; repStart "4317"; chr13 rmsk exon 109324959 109325193 576 + . gene_id "ERVLE_13q33.3f"; transcript_id "ERVLE_13q33.3f"; locus "ERVLE_13q33.3f"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2968"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "-361"; repStart "6"; chr13 rmsk exon 109325294 109325339 303 + . gene_id "ERVLE_13q33.3f"; transcript_id "ERVLE_13q33.3f"; locus "ERVLE_13q33.3f"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_2968"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-2"; repStart "367"; ### ERV316A3_13q33.3a ### chr13 rmsk gene 109445952 109446780 . - . gene_id "ERV316A3_13q33.3a"; transcript_id "ERV316A3_13q33.3a"; locus "ERV316A3_13q33.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2244"; model_cov "828"; model_pct "15.8"; chr13 rmsk exon 109445952 109446780 1418 - . gene_id "ERV316A3_13q33.3a"; transcript_id "ERV316A3_13q33.3a"; locus "ERV316A3_13q33.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2244"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "4323"; repStart "-75"; ### ERV316A3_13q33.3b ### chr13 rmsk gene 109465321 109466932 . + . gene_id "ERV316A3_13q33.3b"; transcript_id "ERV316A3_13q33.3b"; locus "ERV316A3_13q33.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2245"; model_cov "934"; model_pct "17.9"; chr13 rmsk exon 109465321 109465710 972 + . gene_id "ERV316A3_13q33.3b"; transcript_id "ERV316A3_13q33.3b"; locus "ERV316A3_13q33.3b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2245"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-25"; repStart "1"; chr13 rmsk exon 109465971 109466179 698 + . gene_id "ERV316A3_13q33.3b"; transcript_id "ERV316A3_13q33.3b"; locus "ERV316A3_13q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2245"; repClass "LTR"; repEnd "3663"; repFamily "ERVL"; repLeft "-1563"; repStart "3448"; chr13 rmsk exon 109466227 109466932 1260 + . gene_id "ERV316A3_13q33.3b"; transcript_id "ERV316A3_13q33.3b"; locus "ERV316A3_13q33.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2245"; repClass "LTR"; repEnd "4464"; repFamily "ERVL"; repLeft "-762"; repStart "3745"; ### ERV316A3_13q33.3c ### chr13 rmsk gene 109467032 109467884 . + . gene_id "ERV316A3_13q33.3c"; transcript_id "ERV316A3_13q33.3c"; locus "ERV316A3_13q33.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2246"; model_cov "630"; model_pct "12.1"; chr13 rmsk exon 109467032 109467213 276 + . gene_id "ERV316A3_13q33.3c"; transcript_id "ERV316A3_13q33.3c"; locus "ERV316A3_13q33.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2246"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "-806"; repStart "4218"; chr13 rmsk exon 109467201 109467618 978 + . gene_id "ERV316A3_13q33.3c"; transcript_id "ERV316A3_13q33.3c"; locus "ERV316A3_13q33.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2246"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "-142"; repStart "4656"; chr13 rmsk exon 109467774 109467884 294 + . gene_id "ERV316A3_13q33.3c"; transcript_id "ERV316A3_13q33.3c"; locus "ERV316A3_13q33.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2246"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "-303"; repStart "1"; ### ERVL_13q34 ### chr13 rmsk gene 109813009 109815571 . + . gene_id "ERVL_13q34"; transcript_id "ERVL_13q34"; locus "ERVL_13q34"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0358"; model_cov "2077"; model_pct "36.1"; chr13 rmsk exon 109813009 109813319 402 + . gene_id "ERVL_13q34"; transcript_id "ERVL_13q34"; locus "ERVL_13q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0358"; repClass "LTR"; repEnd "890"; repFamily "ERVL"; repLeft "-4867"; repStart "559"; chr13 rmsk exon 109813800 109814434 1536 + . gene_id "ERVL_13q34"; transcript_id "ERVL_13q34"; locus "ERVL_13q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0358"; repClass "LTR"; repEnd "2193"; repFamily "ERVL"; repLeft "-3564"; repStart "1369"; chr13 rmsk exon 109814655 109815571 1536 + . gene_id "ERVL_13q34"; transcript_id "ERVL_13q34"; locus "ERVL_13q34"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0358"; repClass "LTR"; repEnd "3462"; repFamily "ERVL"; repLeft "-2295"; repStart "2540"; ### HERVL_13q34 ### chr13 rmsk gene 109948268 109952554 . + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1063"; model_cov "3748"; model_pct "66.3"; chr13 rmsk exon 109948268 109949580 10389 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "-2649"; repStart "1688"; chr13 rmsk exon 109949548 109951132 12689 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "-764"; repStart "3308"; chr13 rmsk exon 109951111 109951186 361 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "3816"; repFamily "ERVL"; repLeft "-1838"; repStart "3740"; chr13 rmsk exon 109951201 109951534 2497 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-429"; repStart "4885"; chr13 rmsk exon 109951584 109952007 2984 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5221"; chr13 rmsk exon 109952008 109952409 2873 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-117"; chr13 rmsk exon 109952478 109952554 439 + . gene_id "HERVL_13q34"; transcript_id "HERVL_13q34"; locus "HERVL_13q34"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1063"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "362"; ### MER101_13q34a ### chr13 rmsk gene 110607324 110608435 . + . gene_id "MER101_13q34a"; transcript_id "MER101_13q34a"; locus "MER101_13q34a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0305"; model_cov "973"; model_pct "14.7"; chr13 rmsk exon 110607324 110607349 1668 + . gene_id "MER101_13q34a"; transcript_id "MER101_13q34a"; locus "MER101_13q34a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0305"; repClass "LTR"; repEnd "3381"; repFamily "ERV1"; repLeft "-3258"; repStart "3356"; chr13 rmsk exon 110607651 110608435 2028 + . gene_id "MER101_13q34a"; transcript_id "MER101_13q34a"; locus "MER101_13q34a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0305"; repClass "LTR"; repEnd "4062"; repFamily "ERV1"; repLeft "-2577"; repStart "3114"; ### MER34B_13q34 ### chr13 rmsk gene 110741835 110742627 . - . gene_id "MER34B_13q34"; transcript_id "MER34B_13q34"; locus "MER34B_13q34"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0227"; model_cov "695"; model_pct "13.0"; chr13 rmsk exon 110741835 110742108 2327 - . gene_id "MER34B_13q34"; transcript_id "MER34B_13q34"; locus "MER34B_13q34"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0227"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "3010"; repStart "-2076"; chr13 rmsk exon 110742415 110742627 2624 - . gene_id "MER34B_13q34"; transcript_id "MER34B_13q34"; locus "MER34B_13q34"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0227"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "2584"; repStart "-2347"; ### MER101_13q34b ### chr13 rmsk gene 110745513 110747464 . - . gene_id "MER101_13q34b"; transcript_id "MER101_13q34b"; locus "MER101_13q34b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0306"; model_cov "1517"; model_pct "22.8"; chr13 rmsk exon 110745513 110745934 5333 - . gene_id "MER101_13q34b"; transcript_id "MER101_13q34b"; locus "MER101_13q34b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0306"; repClass "LTR"; repEnd "3897"; repFamily "ERV1"; repLeft "3456"; repStart "-2742"; chr13 rmsk exon 110746237 110746903 5333 - . gene_id "MER101_13q34b"; transcript_id "MER101_13q34b"; locus "MER101_13q34b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0306"; repClass "LTR"; repEnd "3455"; repFamily "ERV1"; repLeft "2765"; repStart "-3184"; chr13 rmsk exon 110747085 110747464 1040 - . gene_id "MER101_13q34b"; transcript_id "MER101_13q34b"; locus "MER101_13q34b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0306"; repClass "LTR"; repEnd "2669"; repFamily "ERV1"; repLeft "2283"; repStart "-3970"; ### HERVP71A_13q34a ### chr13 rmsk gene 110933146 110936620 . + . gene_id "HERVP71A_13q34a"; transcript_id "HERVP71A_13q34a"; locus "HERVP71A_13q34a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0068"; model_cov "2577"; model_pct "34.0"; chr13 rmsk exon 110933146 110933726 3567 + . gene_id "HERVP71A_13q34a"; transcript_id "HERVP71A_13q34a"; locus "HERVP71A_13q34a"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0068"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 110933727 110935672 15827 + . gene_id "HERVP71A_13q34a"; transcript_id "HERVP71A_13q34a"; locus "HERVP71A_13q34a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0068"; repClass "LTR"; repEnd "1941"; repFamily "ERV1"; repLeft "-5649"; repStart "2"; chr13 rmsk exon 110935973 110936620 15827 + . gene_id "HERVP71A_13q34a"; transcript_id "HERVP71A_13q34a"; locus "HERVP71A_13q34a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0068"; repClass "LTR"; repEnd "2580"; repFamily "ERV1"; repLeft "-5010"; repStart "1942"; ### HERVP71A_13q34b ### chr13 rmsk gene 110940237 110941185 . + . gene_id "HERVP71A_13q34b"; transcript_id "HERVP71A_13q34b"; locus "HERVP71A_13q34b"; category "internal"; intModel "HERVP71A-int"; locid "HERVP71A-int_0069"; model_cov "945"; model_pct "12.5"; chr13 rmsk exon 110940237 110941185 6633 + . gene_id "HERVP71A_13q34b"; transcript_id "HERVP71A_13q34b"; locus "HERVP71A_13q34b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0069"; repClass "LTR"; repEnd "3512"; repFamily "ERV1"; repLeft "-4078"; repStart "2567"; ### MER41_13q34a ### chr13 rmsk gene 110958167 110964213 . + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0422"; model_cov "4121"; model_pct "69.3"; chr13 rmsk exon 110958167 110958711 4086 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0422"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr13 rmsk exon 110958714 110959387 4774 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "705"; repFamily "ERV1"; repLeft "-5241"; repStart "1"; chr13 rmsk exon 110959628 110960560 4985 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "1752"; repFamily "ERV1"; repLeft "-4194"; repStart "736"; chr13 rmsk exon 110960619 110960667 325 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "1963"; repFamily "ERV1"; repLeft "-3983"; repStart "1915"; chr13 rmsk exon 110961066 110961672 3536 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "2768"; repFamily "ERV1"; repLeft "-3178"; repStart "2163"; chr13 rmsk exon 110961669 110962370 11208 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "4950"; repFamily "ERV1"; repLeft "-996"; repStart "4195"; chr13 rmsk exon 110962667 110963654 11208 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0422"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4951"; chr13 rmsk exon 110963655 110964213 3830 + . gene_id "MER41_13q34a"; transcript_id "MER41_13q34a"; locus "MER41_13q34a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0422"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10F_13q34 ### chr13 rmsk gene 110965260 110970563 . + . gene_id "HERVIP10F_13q34"; transcript_id "HERVIP10F_13q34"; locus "HERVIP10F_13q34"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0089"; model_cov "4781"; model_pct "61.8"; chr13 rmsk exon 110965260 110965842 3341 + . gene_id "HERVIP10F_13q34"; transcript_id "HERVIP10F_13q34"; locus "HERVIP10F_13q34"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0089"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr13 rmsk exon 110965843 110970563 25533 + . gene_id "HERVIP10F_13q34"; transcript_id "HERVIP10F_13q34"; locus "HERVIP10F_13q34"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0089"; repClass "LTR"; repEnd "4782"; repFamily "ERV1"; repLeft "-2955"; repStart "1"; ### ERVLB4_13q34a ### chr13 rmsk gene 111045304 111046485 . + . gene_id "ERVLB4_13q34a"; transcript_id "ERVLB4_13q34a"; locus "ERVLB4_13q34a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1415"; model_cov "1205"; model_pct "21.1"; chr13 rmsk exon 111045304 111045843 541 + . gene_id "ERVLB4_13q34a"; transcript_id "ERVLB4_13q34a"; locus "ERVLB4_13q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1415"; repClass "LTR"; repEnd "1454"; repFamily "ERVL"; repLeft "-4260"; repStart "903"; chr13 rmsk exon 111045862 111046485 2731 + . gene_id "ERVLB4_13q34a"; transcript_id "ERVLB4_13q34a"; locus "ERVLB4_13q34a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1415"; repClass "LTR"; repEnd "2163"; repFamily "ERVL"; repLeft "-3551"; repStart "1509"; ### ERVLE_13q34a ### chr13 rmsk gene 111081367 111084911 . - . gene_id "ERVLE_13q34a"; transcript_id "ERVLE_13q34a"; locus "ERVLE_13q34a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2969"; model_cov "1639"; model_pct "28.9"; chr13 rmsk exon 111081367 111081616 622 - . gene_id "ERVLE_13q34a"; transcript_id "ERVLE_13q34a"; locus "ERVLE_13q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2969"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "4791"; repStart "-635"; chr13 rmsk exon 111081799 111082446 1171 - . gene_id "ERVLE_13q34a"; transcript_id "ERVLE_13q34a"; locus "ERVLE_13q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2969"; repClass "LTR"; repEnd "4302"; repFamily "ERVL"; repLeft "3605"; repStart "-1365"; chr13 rmsk exon 111082448 111082853 1192 - . gene_id "ERVLE_13q34a"; transcript_id "ERVLE_13q34a"; locus "ERVLE_13q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2969"; repClass "LTR"; repEnd "2992"; repFamily "ERVL"; repLeft "2563"; repStart "-2675"; chr13 rmsk exon 111084651 111084911 842 - . gene_id "ERVLE_13q34a"; transcript_id "ERVLE_13q34a"; locus "ERVLE_13q34a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2969"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "2214"; repStart "-3181"; ### HERV9_13q34 ### chr13 rmsk gene 111189214 111199112 . - . gene_id "HERV9_13q34"; transcript_id "HERV9_13q34"; locus "HERV9_13q34"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0156"; model_cov "8396"; model_pct "99.5"; chr13 rmsk exon 111189214 111189941 5574 - . gene_id "HERV9_13q34"; transcript_id "HERV9_13q34"; locus "HERV9_13q34"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0156"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr13 rmsk exon 111189942 111198317 69371 - . gene_id "HERV9_13q34"; transcript_id "HERV9_13q34"; locus "HERV9_13q34"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0156"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "40"; repStart "0"; chr13 rmsk exon 111198331 111199112 6153 - . gene_id "HERV9_13q34"; transcript_id "HERV9_13q34"; locus "HERV9_13q34"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0156"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_13q34b ### chr13 rmsk gene 111346680 111347808 . - . gene_id "ERVLE_13q34b"; transcript_id "ERVLE_13q34b"; locus "ERVLE_13q34b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2970"; model_cov "775"; model_pct "13.7"; chr13 rmsk exon 111346680 111347116 1573 - . gene_id "ERVLE_13q34b"; transcript_id "ERVLE_13q34b"; locus "ERVLE_13q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2970"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "3854"; repStart "-1314"; chr13 rmsk exon 111347548 111347808 1573 - . gene_id "ERVLE_13q34b"; transcript_id "ERVLE_13q34b"; locus "ERVLE_13q34b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2970"; repClass "LTR"; repEnd "3853"; repFamily "ERVL"; repLeft "3577"; repStart "-1814"; ### ERV316A3_13q34a ### chr13 rmsk gene 111700322 111702005 . - . gene_id "ERV316A3_13q34a"; transcript_id "ERV316A3_13q34a"; locus "ERV316A3_13q34a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2247"; model_cov "656"; model_pct "12.6"; chr13 rmsk exon 111700322 111700490 363 - . gene_id "ERV316A3_13q34a"; transcript_id "ERV316A3_13q34a"; locus "ERV316A3_13q34a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2247"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "255"; repStart "0"; chr13 rmsk exon 111700826 111701096 486 - . gene_id "ERV316A3_13q34a"; transcript_id "ERV316A3_13q34a"; locus "ERV316A3_13q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2247"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2804"; repStart "-2141"; chr13 rmsk exon 111701678 111702005 358 - . gene_id "ERV316A3_13q34a"; transcript_id "ERV316A3_13q34a"; locus "ERV316A3_13q34a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2247"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "1706"; repStart "-3145"; ### ERV316A3_13q34b ### chr13 rmsk gene 111785583 111787266 . - . gene_id "ERV316A3_13q34b"; transcript_id "ERV316A3_13q34b"; locus "ERV316A3_13q34b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2248"; model_cov "656"; model_pct "12.6"; chr13 rmsk exon 111785583 111785751 363 - . gene_id "ERV316A3_13q34b"; transcript_id "ERV316A3_13q34b"; locus "ERV316A3_13q34b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2248"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "255"; repStart "0"; chr13 rmsk exon 111786087 111786357 486 - . gene_id "ERV316A3_13q34b"; transcript_id "ERV316A3_13q34b"; locus "ERV316A3_13q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2248"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2804"; repStart "-2141"; chr13 rmsk exon 111786939 111787266 358 - . gene_id "ERV316A3_13q34b"; transcript_id "ERV316A3_13q34b"; locus "ERV316A3_13q34b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2248"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "1706"; repStart "-3145"; ### ERVLB4_13q34b ### chr13 rmsk gene 112187543 112188784 . - . gene_id "ERVLB4_13q34b"; transcript_id "ERVLB4_13q34b"; locus "ERVLB4_13q34b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1416"; model_cov "977"; model_pct "17.1"; chr13 rmsk exon 112187543 112187773 282 - . gene_id "ERVLB4_13q34b"; transcript_id "ERVLB4_13q34b"; locus "ERVLB4_13q34b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1416"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "72"; repStart "-84"; chr13 rmsk exon 112187826 112188018 474 - . gene_id "ERVLB4_13q34b"; transcript_id "ERVLB4_13q34b"; locus "ERVLB4_13q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1416"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5507"; repStart "0"; chr13 rmsk exon 112188039 112188784 4200 - . gene_id "ERVLB4_13q34b"; transcript_id "ERVLB4_13q34b"; locus "ERVLB4_13q34b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1416"; repClass "LTR"; repEnd "5003"; repFamily "ERVL"; repLeft "4233"; repStart "-711"; ### HUERSP1_13q34 ### chr13 rmsk gene 112381526 112389309 . - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0162"; model_cov "5755"; model_pct "91.9"; chr13 rmsk exon 112381526 112382209 5090 - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0162"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13 rmsk exon 112382210 112382242 256 - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0162"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "6231"; repStart "0"; chr13 rmsk exon 112382401 112382705 2261 - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0162"; repClass "LTR"; repEnd "6242"; repFamily "ERV1"; repLeft "5935"; repStart "-21"; chr13 rmsk exon 112383289 112388628 30730 - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0162"; repClass "LTR"; repEnd "5734"; repFamily "ERV1"; repLeft "318"; repStart "-529"; chr13 rmsk exon 112388629 112389309 5239 - . gene_id "HUERSP1_13q34"; transcript_id "HUERSP1_13q34"; locus "HUERSP1_13q34"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0162"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_13q34b ### chr13 rmsk gene 113387466 113391309 . + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0423"; model_cov "2225"; model_pct "37.4"; chr13 rmsk exon 113387466 113388001 2369 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "2058"; repFamily "ERV1"; repLeft "-3888"; repStart "1608"; chr13 rmsk exon 113387996 113388042 4501 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "4124"; repFamily "ERV1"; repLeft "-1822"; repStart "4075"; chr13 rmsk exon 113388347 113388556 1192 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "4317"; repFamily "ERV1"; repLeft "-1629"; repStart "4125"; chr13 rmsk exon 113388647 113389054 9723 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "4828"; repFamily "ERV1"; repLeft "-1118"; repStart "4408"; chr13 rmsk exon 113389360 113389567 9723 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "5026"; repFamily "ERV1"; repLeft "-920"; repStart "4829"; chr13 rmsk exon 113389862 113390763 9723 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0423"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5027"; chr13 rmsk exon 113390764 113391309 4195 + . gene_id "MER41_13q34b"; transcript_id "MER41_13q34b"; locus "MER41_13q34b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0423"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLA_13q34 ### chr13 rmsk gene 113779288 113782475 . - . gene_id "PABLA_13q34"; transcript_id "PABLA_13q34"; locus "PABLA_13q34"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0122"; model_cov "3153"; model_pct "62.9"; chr13 rmsk exon 113779288 113779390 450 - . gene_id "PABLA_13q34"; transcript_id "PABLA_13q34"; locus "PABLA_13q34"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0122"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4944"; repStart "0"; chr13 rmsk exon 113779430 113779504 474 - . gene_id "PABLA_13q34"; transcript_id "PABLA_13q34"; locus "PABLA_13q34"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0122"; repClass "LTR"; repEnd "4870"; repFamily "ERV1"; repLeft "4796"; repStart "-145"; chr13 rmsk exon 113779508 113782475 19217 - . gene_id "PABLA_13q34"; transcript_id "PABLA_13q34"; locus "PABLA_13q34"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0122"; repClass "LTR"; repEnd "4870"; repFamily "ERV1"; repLeft "1862"; repStart "-145"; ### HERVFH19_13q34 ### chr13 rmsk gene 113782549 113785249 . - . gene_id "HERVFH19_13q34"; transcript_id "HERVFH19_13q34"; locus "HERVFH19_13q34"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0036"; model_cov "2333"; model_pct "30.2"; chr13 rmsk exon 113782549 113784886 13709 - . gene_id "HERVFH19_13q34"; transcript_id "HERVFH19_13q34"; locus "HERVFH19_13q34"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0036"; repClass "LTR"; repEnd "2334"; repFamily "ERV1"; repLeft "1"; repStart "-5385"; chr13 rmsk exon 113784887 113785249 1118 - . gene_id "HERVFH19_13q34"; transcript_id "HERVFH19_13q34"; locus "HERVFH19_13q34"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0036"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_13q34c ### chr13 rmsk gene 113959658 113961609 . + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0307"; model_cov "1797"; model_pct "27.1"; chr13 rmsk exon 113959658 113959785 401 + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0307"; repClass "LTR"; repEnd "4148"; repFamily "ERV1"; repLeft "-2491"; repStart "4023"; chr13 rmsk exon 113959776 113959970 1420 + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0307"; repClass "LTR"; repEnd "2526"; repFamily "ERV1"; repLeft "-4113"; repStart "2323"; chr13 rmsk exon 113960267 113960446 1420 + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0307"; repClass "LTR"; repEnd "2659"; repFamily "ERV1"; repLeft "-3980"; repStart "2313"; chr13 rmsk exon 113960492 113960589 475 + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0307"; repClass "LTR"; repEnd "3651"; repFamily "ERV1"; repLeft "-2988"; repStart "3552"; chr13 rmsk exon 113960592 113961609 2805 + . gene_id "MER101_13q34c"; transcript_id "MER101_13q34c"; locus "MER101_13q34c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0307"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "-2704"; repStart "2911"; ### ERV316A3_14q11.2a ### chr14 rmsk gene 18300421 18301639 . - . gene_id "ERV316A3_14q11.2a"; transcript_id "ERV316A3_14q11.2a"; locus "ERV316A3_14q11.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2250"; model_cov "571"; model_pct "10.9"; chr14 rmsk exon 18300421 18300626 678 - . gene_id "ERV316A3_14q11.2a"; transcript_id "ERV316A3_14q11.2a"; locus "ERV316A3_14q11.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2250"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "173"; repStart "-80"; chr14 rmsk exon 18300831 18300960 417 - . gene_id "ERV316A3_14q11.2a"; transcript_id "ERV316A3_14q11.2a"; locus "ERV316A3_14q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2250"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "5069"; repStart "-28"; chr14 rmsk exon 18301231 18301639 2075 - . gene_id "ERV316A3_14q11.2a"; transcript_id "ERV316A3_14q11.2a"; locus "ERV316A3_14q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2250"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "4188"; repStart "-596"; ### ERV316A3_14q11.2b ### chr14 rmsk gene 18301693 18302900 . - . gene_id "ERV316A3_14q11.2b"; transcript_id "ERV316A3_14q11.2b"; locus "ERV316A3_14q11.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2251"; model_cov "1312"; model_pct "25.1"; chr14 rmsk exon 18301693 18302900 2075 - . gene_id "ERV316A3_14q11.2b"; transcript_id "ERV316A3_14q11.2b"; locus "ERV316A3_14q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2251"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "3318"; repStart "-596"; ### HERVI_14q11.2 ### chr14 rmsk gene 18347310 18349749 . + . gene_id "HERVI_14q11.2"; transcript_id "HERVI_14q11.2"; locus "HERVI_14q11.2"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0028"; model_cov "1976"; model_pct "25.4"; chr14 rmsk exon 18347310 18347823 2393 + . gene_id "HERVI_14q11.2"; transcript_id "HERVI_14q11.2"; locus "HERVI_14q11.2"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0028"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "3"; chr14 rmsk exon 18347839 18348171 1132 + . gene_id "HERVI_14q11.2"; transcript_id "HERVI_14q11.2"; locus "HERVI_14q11.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0028"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-7468"; repStart "1"; chr14 rmsk exon 18348183 18349749 7927 + . gene_id "HERVI_14q11.2"; transcript_id "HERVI_14q11.2"; locus "HERVI_14q11.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0028"; repClass "LTR"; repEnd "1948"; repFamily "ERV1"; repLeft "-5837"; repStart "288"; ### HERVIP10F_14q11.2a ### chr14 rmsk gene 18354067 18359902 . + . gene_id "HERVIP10F_14q11.2a"; transcript_id "HERVIP10F_14q11.2a"; locus "HERVIP10F_14q11.2a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0090"; model_cov "5257"; model_pct "67.9"; chr14 rmsk exon 18354067 18357389 22694 + . gene_id "HERVIP10F_14q11.2a"; transcript_id "HERVIP10F_14q11.2a"; locus "HERVIP10F_14q11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0090"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "-2635"; repStart "1771"; chr14 rmsk exon 18357382 18359305 12178 + . gene_id "HERVIP10F_14q11.2a"; transcript_id "HERVIP10F_14q11.2a"; locus "HERVIP10F_14q11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0090"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "-7"; repStart "5804"; chr14 rmsk exon 18359310 18359360 227 + . gene_id "HERVIP10F_14q11.2a"; transcript_id "HERVIP10F_14q11.2a"; locus "HERVIP10F_14q11.2a"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0090"; repClass "LTR"; repEnd "51"; repFamily "ERV1"; repLeft "-496"; repStart "1"; chr14 rmsk exon 18359383 18359902 2624 + . gene_id "HERVIP10F_14q11.2a"; transcript_id "HERVIP10F_14q11.2a"; locus "HERVIP10F_14q11.2a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0090"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### MER101_14q11.2a ### chr14 rmsk gene 18619564 18620450 . - . gene_id "MER101_14q11.2a"; transcript_id "MER101_14q11.2a"; locus "MER101_14q11.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0308"; model_cov "824"; model_pct "12.4"; chr14 rmsk exon 18619564 18620104 2102 - . gene_id "MER101_14q11.2a"; transcript_id "MER101_14q11.2a"; locus "MER101_14q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0308"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "3055"; repStart "-3060"; chr14 rmsk exon 18620136 18620450 2102 - . gene_id "MER101_14q11.2a"; transcript_id "MER101_14q11.2a"; locus "MER101_14q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0308"; repClass "LTR"; repEnd "3054"; repFamily "ERV1"; repLeft "2754"; repStart "-3585"; ### MER41_14q11.2a ### chr14 rmsk gene 18924654 18925330 . + . gene_id "MER41_14q11.2a"; transcript_id "MER41_14q11.2a"; locus "MER41_14q11.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0424"; model_cov "687"; model_pct "11.6"; chr14 rmsk exon 18924654 18924889 945 + . gene_id "MER41_14q11.2a"; transcript_id "MER41_14q11.2a"; locus "MER41_14q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0424"; repClass "LTR"; repEnd "-124"; repFamily "ERV1"; repLeft "-6070"; repStart "-335"; chr14 rmsk exon 18924881 18925330 2217 + . gene_id "MER41_14q11.2a"; transcript_id "MER41_14q11.2a"; locus "MER41_14q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0424"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "-2725"; repStart "2745"; ### MER4_14q11.2a ### chr14 rmsk gene 18935159 18941706 . + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0642"; model_cov "6837"; model_pct "100.0"; chr14 rmsk exon 18935159 18935617 3005 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0642"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr14 rmsk exon 18935623 18936189 2594 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0642"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5989"; repStart "1"; chr14 rmsk exon 18936168 18936751 3754 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0642"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "-4588"; repStart "1005"; chr14 rmsk exon 18937457 18937911 3754 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0642"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "-4099"; repStart "2011"; chr14 rmsk exon 18938139 18941272 14763 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0642"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "1862"; chr14 rmsk exon 18941274 18941706 3007 + . gene_id "MER4_14q11.2a"; transcript_id "MER4_14q11.2a"; locus "MER4_14q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0642"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### MER4_14q11.2b ### chr14 rmsk gene 19003476 19004587 . + . gene_id "MER4_14q11.2b"; transcript_id "MER4_14q11.2b"; locus "MER4_14q11.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0643"; model_cov "904"; model_pct "13.7"; chr14 rmsk exon 19003476 19004024 2099 + . gene_id "MER4_14q11.2b"; transcript_id "MER4_14q11.2b"; locus "MER4_14q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0643"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-5943"; repStart "29"; chr14 rmsk exon 19004029 19004119 446 + . gene_id "MER4_14q11.2b"; transcript_id "MER4_14q11.2b"; locus "MER4_14q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0643"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-723"; chr14 rmsk exon 19004411 19004587 584 + . gene_id "MER4_14q11.2b"; transcript_id "MER4_14q11.2b"; locus "MER4_14q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0643"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "-5501"; repStart "909"; ### MER4B_14q11.2a ### chr14 rmsk gene 19191625 19196122 . - . gene_id "MER4B_14q11.2a"; transcript_id "MER4B_14q11.2a"; locus "MER4B_14q11.2a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0354"; model_cov "2239"; model_pct "33.1"; chr14 rmsk exon 19191625 19192967 1453 - . gene_id "MER4B_14q11.2a"; transcript_id "MER4B_14q11.2a"; locus "MER4B_14q11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0354"; repClass "LTR"; repEnd "2790"; repFamily "ERV1"; repLeft "1403"; repStart "-3968"; chr14 rmsk exon 19194920 19195591 2078 - . gene_id "MER4B_14q11.2a"; transcript_id "MER4B_14q11.2a"; locus "MER4B_14q11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0354"; repClass "LTR"; repEnd "409"; repFamily "ERV1"; repLeft "-443"; repStart "-6349"; chr14 rmsk exon 19195593 19196122 1837 - . gene_id "MER4B_14q11.2a"; transcript_id "MER4B_14q11.2a"; locus "MER4B_14q11.2a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0354"; repClass "LTR"; repEnd "487"; repFamily "ERV1"; repLeft "1"; repStart "-294"; ### MER4_14q11.2c ### chr14 rmsk gene 19397186 19398300 . - . gene_id "MER4_14q11.2c"; transcript_id "MER4_14q11.2c"; locus "MER4_14q11.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0644"; model_cov "904"; model_pct "13.7"; chr14 rmsk exon 19397186 19397362 591 - . gene_id "MER4_14q11.2c"; transcript_id "MER4_14q11.2c"; locus "MER4_14q11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0644"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "909"; repStart "-5501"; chr14 rmsk exon 19397657 19397747 451 - . gene_id "MER4_14q11.2c"; transcript_id "MER4_14q11.2c"; locus "MER4_14q11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0644"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-723"; repStart "-7231"; chr14 rmsk exon 19397752 19398300 2085 - . gene_id "MER4_14q11.2c"; transcript_id "MER4_14q11.2c"; locus "MER4_14q11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0644"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "29"; repStart "-5943"; ### MER4_14q11.2d ### chr14 rmsk gene 19460242 19463808 . - . gene_id "MER4_14q11.2d"; transcript_id "MER4_14q11.2d"; locus "MER4_14q11.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0645"; model_cov "4715"; model_pct "71.5"; chr14 rmsk exon 19460242 19460674 2999 - . gene_id "MER4_14q11.2d"; transcript_id "MER4_14q11.2d"; locus "MER4_14q11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0645"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chr14 rmsk exon 19460676 19463808 14829 - . gene_id "MER4_14q11.2d"; transcript_id "MER4_14q11.2d"; locus "MER4_14q11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0645"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "1883"; repStart "0"; ### MER4_14q11.2e ### chr14 rmsk gene 19464034 19466789 . - . gene_id "MER4_14q11.2e"; transcript_id "MER4_14q11.2e"; locus "MER4_14q11.2e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0646"; model_cov "2079"; model_pct "31.5"; chr14 rmsk exon 19464034 19464490 14829 - . gene_id "MER4_14q11.2e"; transcript_id "MER4_14q11.2e"; locus "MER4_14q11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0646"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5908"; repStart "0"; chr14 rmsk exon 19465196 19465779 9701 - . gene_id "MER4_14q11.2e"; transcript_id "MER4_14q11.2e"; locus "MER4_14q11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0646"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "503"; repStart "-5314"; chr14 rmsk exon 19465758 19466325 2597 - . gene_id "MER4_14q11.2e"; transcript_id "MER4_14q11.2e"; locus "MER4_14q11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0646"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "1"; repStart "-5989"; chr14 rmsk exon 19466331 19466789 3181 - . gene_id "MER4_14q11.2e"; transcript_id "MER4_14q11.2e"; locus "MER4_14q11.2e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0646"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### MER101_14q11.2b ### chr14 rmsk gene 19694595 19695473 . + . gene_id "MER101_14q11.2b"; transcript_id "MER101_14q11.2b"; locus "MER101_14q11.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0309"; model_cov "826"; model_pct "12.4"; chr14 rmsk exon 19694595 19695473 2004 + . gene_id "MER101_14q11.2b"; transcript_id "MER101_14q11.2b"; locus "MER101_14q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0309"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "-3060"; repStart "2753"; ### ERV316A3_14q11.2c ### chr14 rmsk gene 19731185 19731941 . - . gene_id "ERV316A3_14q11.2c"; transcript_id "ERV316A3_14q11.2c"; locus "ERV316A3_14q11.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2252"; model_cov "783"; model_pct "15.0"; chr14 rmsk exon 19731185 19731941 1129 - . gene_id "ERV316A3_14q11.2c"; transcript_id "ERV316A3_14q11.2c"; locus "ERV316A3_14q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2252"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "3353"; repStart "-1090"; ### ERVLE_14q11.2a ### chr14 rmsk gene 19926295 19928268 . + . gene_id "ERVLE_14q11.2a"; transcript_id "ERVLE_14q11.2a"; locus "ERVLE_14q11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2972"; model_cov "1940"; model_pct "34.2"; chr14 rmsk exon 19926295 19926446 398 + . gene_id "ERVLE_14q11.2a"; transcript_id "ERVLE_14q11.2a"; locus "ERVLE_14q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2972"; repClass "LTR"; repEnd "2705"; repFamily "ERVL"; repLeft "-2962"; repStart "2450"; chr14 rmsk exon 19926583 19927213 896 + . gene_id "ERVLE_14q11.2a"; transcript_id "ERVLE_14q11.2a"; locus "ERVLE_14q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2972"; repClass "LTR"; repEnd "3538"; repFamily "ERVL"; repLeft "-2129"; repStart "2876"; chr14 rmsk exon 19927239 19927560 730 + . gene_id "ERVLE_14q11.2a"; transcript_id "ERVLE_14q11.2a"; locus "ERVLE_14q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2972"; repClass "LTR"; repEnd "4241"; repFamily "ERVL"; repLeft "-1426"; repStart "3909"; chr14 rmsk exon 19927560 19928268 668 + . gene_id "ERVLE_14q11.2a"; transcript_id "ERVLE_14q11.2a"; locus "ERVLE_14q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2972"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "-886"; repStart "4090"; ### HERVIP10F_14q11.2b ### chr14 rmsk gene 19978435 19982365 . + . gene_id "HERVIP10F_14q11.2b"; transcript_id "HERVIP10F_14q11.2b"; locus "HERVIP10F_14q11.2b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0091"; model_cov "3379"; model_pct "43.7"; chr14 rmsk exon 19978435 19978628 2290 + . gene_id "HERVIP10F_14q11.2b"; transcript_id "HERVIP10F_14q11.2b"; locus "HERVIP10F_14q11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0091"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "-2525"; repStart "5013"; chr14 rmsk exon 19978668 19978781 2290 + . gene_id "HERVIP10F_14q11.2b"; transcript_id "HERVIP10F_14q11.2b"; locus "HERVIP10F_14q11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0091"; repClass "LTR"; repEnd "5327"; repFamily "ERV1"; repLeft "-2410"; repStart "5213"; chr14 rmsk exon 19978756 19981775 16503 + . gene_id "HERVIP10F_14q11.2b"; transcript_id "HERVIP10F_14q11.2b"; locus "HERVIP10F_14q11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0091"; repClass "LTR"; repEnd "7736"; repFamily "ERV1"; repLeft "-1"; repStart "4670"; chr14 rmsk exon 19981824 19982365 2792 + . gene_id "HERVIP10F_14q11.2b"; transcript_id "HERVIP10F_14q11.2b"; locus "HERVIP10F_14q11.2b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0091"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### ERV316A3_14q11.2d ### chr14 rmsk gene 20021103 20023816 . + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2254"; model_cov "1820"; model_pct "34.8"; chr14 rmsk exon 20021103 20021297 632 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "300"; chr14 rmsk exon 20021518 20021774 356 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "81"; repFamily "ERVL"; repLeft "-5145"; repStart "-177"; chr14 rmsk exon 20021821 20022103 303 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "868"; repFamily "ERVL"; repLeft "-4358"; repStart "588"; chr14 rmsk exon 20022152 20022403 312 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "1235"; repFamily "ERVL"; repLeft "-3991"; repStart "958"; chr14 rmsk exon 20022689 20023221 838 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "2156"; repFamily "ERVL"; repLeft "-3070"; repStart "1601"; chr14 rmsk exon 20023383 20023816 711 + . gene_id "ERV316A3_14q11.2d"; transcript_id "ERV316A3_14q11.2d"; locus "ERV316A3_14q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2254"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2111"; repStart "2665"; ### ERV316A3_14q11.2e ### chr14 rmsk gene 20069550 20070497 . - . gene_id "ERV316A3_14q11.2e"; transcript_id "ERV316A3_14q11.2e"; locus "ERV316A3_14q11.2e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2255"; model_cov "608"; model_pct "11.6"; chr14 rmsk exon 20069550 20069816 515 - . gene_id "ERV316A3_14q11.2e"; transcript_id "ERV316A3_14q11.2e"; locus "ERV316A3_14q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2255"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "3919"; repStart "-1029"; chr14 rmsk exon 20069828 20069910 252 - . gene_id "ERV316A3_14q11.2e"; transcript_id "ERV316A3_14q11.2e"; locus "ERV316A3_14q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2255"; repClass "LTR"; repEnd "3871"; repFamily "ERVL"; repLeft "3784"; repStart "-1355"; chr14 rmsk exon 20070249 20070497 295 - . gene_id "ERV316A3_14q11.2e"; transcript_id "ERV316A3_14q11.2e"; locus "ERV316A3_14q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2255"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "2337"; repStart "-2646"; ### HERVL_14q11.2 ### chr14 rmsk gene 20567316 20573538 . + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1064"; model_cov "5322"; model_pct "94.1"; chr14 rmsk exon 20567316 20567420 3243 + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1064"; repClass "LTR"; repEnd "105"; repFamily "ERVL"; repLeft "-339"; repStart "1"; chr14 rmsk exon 20567488 20567838 3243 + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1064"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "106"; chr14 rmsk exon 20567839 20569320 11917 + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1064"; repClass "LTR"; repEnd "1492"; repFamily "ERVL"; repLeft "-4162"; repStart "1"; chr14 rmsk exon 20569321 20573123 30591 + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1064"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1823"; chr14 rmsk exon 20573124 20573538 2767 + . gene_id "HERVL_14q11.2"; transcript_id "HERVL_14q11.2"; locus "HERVL_14q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1064"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_14q11.2 ### chr14 rmsk gene 20600302 20607318 . + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0125"; model_cov "6289"; model_pct "100.0"; chr14 rmsk exon 20600302 20604516 27151 + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0125"; repClass "LTR"; repEnd "4289"; repFamily "ERVL"; repLeft "-1758"; repStart "56"; chr14 rmsk exon 20604522 20604833 2084 + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0125"; repClass "LTR"; repEnd "3099"; repFamily "ERVL"; repLeft "-2948"; repStart "2790"; chr14 rmsk exon 20604942 20605456 11508 + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0125"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-1225"; repStart "4299"; chr14 rmsk exon 20605768 20606987 11508 + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0125"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "4823"; chr14 rmsk exon 20606989 20607318 2592 + . gene_id "HERVL18_14q11.2"; transcript_id "HERVL18_14q11.2"; locus "HERVL18_14q11.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0125"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_14q11.2a ### chr14 rmsk gene 20700836 20706579 . + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1007"; model_cov "5153"; model_pct "66.8"; chr14 rmsk exon 20700836 20701254 2206 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 20701255 20701683 1087 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr14 rmsk exon 20701741 20705391 18148 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "5777"; repFamily "ERV1"; repLeft "-1936"; repStart "1859"; chr14 rmsk exon 20705372 20705561 1293 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6758"; chr14 rmsk exon 20705556 20705614 282 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr14 rmsk exon 20705620 20706160 3477 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7176"; chr14 rmsk exon 20706162 20706579 2313 + . gene_id "HERVH_14q11.2a"; transcript_id "HERVH_14q11.2a"; locus "HERVH_14q11.2a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1007"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLB_14q11.2a ### chr14 rmsk gene 20708321 20710405 . - . gene_id "PABLB_14q11.2a"; transcript_id "PABLB_14q11.2a"; locus "PABLB_14q11.2a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0081"; model_cov "2066"; model_pct "29.0"; chr14 rmsk exon 20708321 20710405 2208 - . gene_id "PABLB_14q11.2a"; transcript_id "PABLB_14q11.2a"; locus "PABLB_14q11.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0081"; repClass "LTR"; repEnd "7057"; repFamily "ERV1"; repLeft "4991"; repStart "-65"; ### HERVIP10F_14q11.2c ### chr14 rmsk gene 20710435 20719019 . - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; category "tandem*"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0092"; model_cov "5171"; model_pct "66.8"; chr14 rmsk exon 20710435 20714046 3606 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "5487"; repFamily "ERV1"; repLeft "572"; repStart "-2250"; chr14 rmsk exon 20714407 20714666 252 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "2446"; repFamily "ERV1"; repLeft "2190"; repStart "-5291"; chr14 rmsk exon 20715189 20715682 2229 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "3"; repStart "-64"; chr14 rmsk exon 20716021 20716068 255 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "113"; repFamily "ERV1"; repLeft "63"; repStart "-496"; chr14 rmsk exon 20716073 20718090 17458 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "7732"; repFamily "ERV1"; repLeft "5716"; repStart "-5"; chr14 rmsk exon 20718375 20719019 17458 - . gene_id "HERVIP10F_14q11.2c"; transcript_id "HERVIP10F_14q11.2c"; locus "HERVIP10F_14q11.2c"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0092"; repClass "LTR"; repEnd "5715"; repFamily "ERV1"; repLeft "5072"; repStart "-2022"; ### MER41_14q11.2b ### chr14 rmsk gene 20753026 20753876 . + . gene_id "MER41_14q11.2b"; transcript_id "MER41_14q11.2b"; locus "MER41_14q11.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0427"; model_cov "774"; model_pct "13.0"; chr14 rmsk exon 20753026 20753129 327 + . gene_id "MER41_14q11.2b"; transcript_id "MER41_14q11.2b"; locus "MER41_14q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0427"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-5393"; repStart "451"; chr14 rmsk exon 20753134 20753876 561 + . gene_id "MER41_14q11.2b"; transcript_id "MER41_14q11.2b"; locus "MER41_14q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0427"; repClass "LTR"; repEnd "-47"; repFamily "ERV1"; repLeft "-5993"; repStart "-719"; ### PABLB_14q11.2b ### chr14 rmsk gene 20757300 20758434 . + . gene_id "PABLB_14q11.2b"; transcript_id "PABLB_14q11.2b"; locus "PABLB_14q11.2b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0083"; model_cov "869"; model_pct "12.2"; chr14 rmsk exon 20757300 20757383 362 + . gene_id "PABLB_14q11.2b"; transcript_id "PABLB_14q11.2b"; locus "PABLB_14q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0083"; repClass "LTR"; repEnd "735"; repFamily "ERV1"; repLeft "-6387"; repStart "651"; chr14 rmsk exon 20757662 20758434 2283 + . gene_id "PABLB_14q11.2b"; transcript_id "PABLB_14q11.2b"; locus "PABLB_14q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0083"; repClass "LTR"; repEnd "1720"; repFamily "ERV1"; repLeft "-5402"; repStart "935"; ### PABLB_14q11.2c ### chr14 rmsk gene 20758515 20761602 . + . gene_id "PABLB_14q11.2c"; transcript_id "PABLB_14q11.2c"; locus "PABLB_14q11.2c"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0084"; model_cov "2032"; model_pct "28.5"; chr14 rmsk exon 20758515 20758577 252 + . gene_id "PABLB_14q11.2c"; transcript_id "PABLB_14q11.2c"; locus "PABLB_14q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0084"; repClass "LTR"; repEnd "1341"; repFamily "ERV1"; repLeft "-5781"; repStart "1279"; chr14 rmsk exon 20759192 20759516 500 + . gene_id "PABLB_14q11.2c"; transcript_id "PABLB_14q11.2c"; locus "PABLB_14q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0084"; repClass "LTR"; repEnd "1999"; repFamily "ERV1"; repLeft "-5123"; repStart "1845"; chr14 rmsk exon 20760419 20760536 297 + . gene_id "PABLB_14q11.2c"; transcript_id "PABLB_14q11.2c"; locus "PABLB_14q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0084"; repClass "LTR"; repEnd "3090"; repFamily "ERV1"; repLeft "-4032"; repStart "2973"; chr14 rmsk exon 20760610 20761602 1531 + . gene_id "PABLB_14q11.2c"; transcript_id "PABLB_14q11.2c"; locus "PABLB_14q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0084"; repClass "LTR"; repEnd "3319"; repFamily "ERV1"; repLeft "-3803"; repStart "1620"; ### PRIMA41_14q11.2 ### chr14 rmsk gene 20762604 20763363 . + . gene_id "PRIMA41_14q11.2"; transcript_id "PRIMA41_14q11.2"; locus "PRIMA41_14q11.2"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0108"; model_cov "783"; model_pct "10.1"; chr14 rmsk exon 20762604 20763363 1684 + . gene_id "PRIMA41_14q11.2"; transcript_id "PRIMA41_14q11.2"; locus "PRIMA41_14q11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0108"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "-251"; repStart "6722"; ### HERVH_14q11.2b ### chr14 rmsk gene 20814518 20816730 . - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1008"; model_cov "1646"; model_pct "21.3"; chr14 rmsk exon 20814518 20814948 3255 - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1008"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 20814949 20815381 2727 - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1008"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr14 rmsk exon 20815385 20815977 4571 - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1008"; repClass "LTR"; repEnd "5016"; repFamily "ERV1"; repLeft "4427"; repStart "-2697"; chr14 rmsk exon 20815946 20816527 2938 - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1008"; repClass "LTR"; repEnd "2823"; repFamily "ERV1"; repLeft "2196"; repStart "-4890"; chr14 rmsk exon 20816528 20816730 1739 - . gene_id "HERVH_14q11.2b"; transcript_id "HERVH_14q11.2b"; locus "HERVH_14q11.2b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1008"; repClass "LTR"; repEnd "203"; repFamily "ERV1"; repLeft "1"; repStart "-261"; ### HERVIP10FH_14q11.2 ### chr14 rmsk gene 20822717 20828859 . - . gene_id "HERVIP10FH_14q11.2"; transcript_id "HERVIP10FH_14q11.2"; locus "HERVIP10FH_14q11.2"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0137"; model_cov "5101"; model_pct "100.0"; chr14 rmsk exon 20822717 20823192 3449 - . gene_id "HERVIP10FH_14q11.2"; transcript_id "HERVIP10FH_14q11.2"; locus "HERVIP10FH_14q11.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0137"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr14 rmsk exon 20823193 20828253 36621 - . gene_id "HERVIP10FH_14q11.2"; transcript_id "HERVIP10FH_14q11.2"; locus "HERVIP10FH_14q11.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0137"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 20828254 20828859 3181 - . gene_id "HERVIP10FH_14q11.2"; transcript_id "HERVIP10FH_14q11.2"; locus "HERVIP10FH_14q11.2"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0137"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_14q11.2 ### chr14 rmsk gene 20830771 20836724 . - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0042"; model_cov "5292"; model_pct "79.5"; chr14 rmsk exon 20830771 20831153 2793 - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0042"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr14 rmsk exon 20831158 20831343 1199 - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0042"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6472"; repStart "0"; chr14 rmsk exon 20831344 20832331 7091 - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0042"; repClass "LTR"; repEnd "5653"; repFamily "ERV1"; repLeft "4670"; repStart "-1001"; chr14 rmsk exon 20832301 20836303 26089 - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0042"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "1"; repStart "-2526"; chr14 rmsk exon 20836305 20836724 2997 - . gene_id "HERVH48_14q11.2"; transcript_id "HERVH48_14q11.2"; locus "HERVH48_14q11.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0042"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_14q11.2f ### chr14 rmsk gene 20870868 20871718 . + . gene_id "ERV316A3_14q11.2f"; transcript_id "ERV316A3_14q11.2f"; locus "ERV316A3_14q11.2f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2256"; model_cov "833"; model_pct "15.9"; chr14 rmsk exon 20870868 20871718 3381 + . gene_id "ERV316A3_14q11.2f"; transcript_id "ERV316A3_14q11.2f"; locus "ERV316A3_14q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2256"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4393"; ### PABLA_14q11.2 ### chr14 rmsk gene 21003288 21010322 . + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0123"; model_cov "4544"; model_pct "90.6"; chr14 rmsk exon 21003288 21003917 4625 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "42"; chr14 rmsk exon 21003918 21004810 6713 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "-4116"; repStart "1"; chr14 rmsk exon 21004803 21005297 3754 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-3366"; repStart "1151"; chr14 rmsk exon 21005507 21006081 20398 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "2438"; repFamily "ERV1"; repLeft "-2577"; repStart "1863"; chr14 rmsk exon 21006154 21006269 20398 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "2556"; repFamily "ERV1"; repLeft "-2459"; repStart "2439"; chr14 rmsk exon 21006573 21007541 20398 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "3509"; repFamily "ERV1"; repLeft "-1506"; repStart "2557"; chr14 rmsk exon 21007849 21007966 20398 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "3622"; repFamily "ERV1"; repLeft "-1393"; repStart "3510"; chr14 rmsk exon 21008279 21009671 20398 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "3623"; chr14 rmsk exon 21009672 21010322 5253 + . gene_id "PABLA_14q11.2"; transcript_id "PABLA_14q11.2"; locus "PABLA_14q11.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0123"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMAX_14q11.2 ### chr14 rmsk gene 21692002 21692467 . - . gene_id "PRIMAX_14q11.2"; transcript_id "PRIMAX_14q11.2"; locus "PRIMAX_14q11.2"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0027"; model_cov "440"; model_pct "10.7"; chr14 rmsk exon 21692002 21692467 413 - . gene_id "PRIMAX_14q11.2"; transcript_id "PRIMAX_14q11.2"; locus "PRIMAX_14q11.2"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0027"; repClass "LTR"; repEnd "3183"; repFamily "ERV1"; repLeft "2743"; repStart "-919"; ### HERVL40_14q11.2a ### chr14 rmsk gene 21833755 21837351 . - . gene_id "HERVL40_14q11.2a"; transcript_id "HERVL40_14q11.2a"; locus "HERVL40_14q11.2a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0366"; model_cov "1209"; model_pct "21.9"; chr14 rmsk exon 21833755 21834187 1498 - . gene_id "HERVL40_14q11.2a"; transcript_id "HERVL40_14q11.2a"; locus "HERVL40_14q11.2a"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0366"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "8"; repStart "0"; chr14 rmsk exon 21834199 21834358 675 - . gene_id "HERVL40_14q11.2a"; transcript_id "HERVL40_14q11.2a"; locus "HERVL40_14q11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0366"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5373"; repStart "0"; chr14 rmsk exon 21834432 21834634 4346 - . gene_id "HERVL40_14q11.2a"; transcript_id "HERVL40_14q11.2a"; locus "HERVL40_14q11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0366"; repClass "LTR"; repEnd "5229"; repFamily "ERVL"; repLeft "5012"; repStart "-301"; chr14 rmsk exon 21836524 21837351 4346 - . gene_id "HERVL40_14q11.2a"; transcript_id "HERVL40_14q11.2a"; locus "HERVL40_14q11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0366"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "4176"; repStart "-519"; ### HERVL40_14q11.2b ### chr14 rmsk gene 21882195 21883912 . - . gene_id "HERVL40_14q11.2b"; transcript_id "HERVL40_14q11.2b"; locus "HERVL40_14q11.2b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0367"; model_cov "1307"; model_pct "23.6"; chr14 rmsk exon 21882195 21882649 1720 - . gene_id "HERVL40_14q11.2b"; transcript_id "HERVL40_14q11.2b"; locus "HERVL40_14q11.2b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0367"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 21882651 21883395 1714 - . gene_id "HERVL40_14q11.2b"; transcript_id "HERVL40_14q11.2b"; locus "HERVL40_14q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0367"; repClass "LTR"; repEnd "5529"; repFamily "ERVL"; repLeft "4744"; repStart "-1"; chr14 rmsk exon 21883407 21883912 1715 - . gene_id "HERVL40_14q11.2b"; transcript_id "HERVL40_14q11.2b"; locus "HERVL40_14q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0367"; repClass "LTR"; repEnd "4697"; repFamily "ERVL"; repLeft "4175"; repStart "-833"; ### HERVL40_14q11.2c ### chr14 rmsk gene 21960596 21961913 . - . gene_id "HERVL40_14q11.2c"; transcript_id "HERVL40_14q11.2c"; locus "HERVL40_14q11.2c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0368"; model_cov "876"; model_pct "15.8"; chr14 rmsk exon 21960596 21961046 1687 - . gene_id "HERVL40_14q11.2c"; transcript_id "HERVL40_14q11.2c"; locus "HERVL40_14q11.2c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0368"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 21961047 21961255 970 - . gene_id "HERVL40_14q11.2c"; transcript_id "HERVL40_14q11.2c"; locus "HERVL40_14q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0368"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5321"; repStart "0"; chr14 rmsk exon 21961291 21961913 2225 - . gene_id "HERVL40_14q11.2c"; transcript_id "HERVL40_14q11.2c"; locus "HERVL40_14q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0368"; repClass "LTR"; repEnd "5255"; repFamily "ERVL"; repLeft "4588"; repStart "-275"; ### ERVLE_14q11.2b ### chr14 rmsk gene 22097570 22098590 . - . gene_id "ERVLE_14q11.2b"; transcript_id "ERVLE_14q11.2b"; locus "ERVLE_14q11.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2974"; model_cov "663"; model_pct "11.7"; chr14 rmsk exon 22097570 22097848 750 - . gene_id "ERVLE_14q11.2b"; transcript_id "ERVLE_14q11.2b"; locus "ERVLE_14q11.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_2974"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "160"; repStart "-204"; chr14 rmsk exon 22097952 22098432 1848 - . gene_id "ERVLE_14q11.2b"; transcript_id "ERVLE_14q11.2b"; locus "ERVLE_14q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2974"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "5168"; repStart "-2"; chr14 rmsk exon 22098429 22098590 487 - . gene_id "ERVLE_14q11.2b"; transcript_id "ERVLE_14q11.2b"; locus "ERVLE_14q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2974"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "4373"; repStart "-1128"; ### ERVLE_14q11.2c ### chr14 rmsk gene 22158290 22159566 . + . gene_id "ERVLE_14q11.2c"; transcript_id "ERVLE_14q11.2c"; locus "ERVLE_14q11.2c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_2975"; model_cov "782"; model_pct "13.8"; chr14 rmsk exon 22158290 22159019 2587 + . gene_id "ERVLE_14q11.2c"; transcript_id "ERVLE_14q11.2c"; locus "ERVLE_14q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2975"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "-5"; repStart "4880"; chr14 rmsk exon 22159028 22159566 1543 + . gene_id "ERVLE_14q11.2c"; transcript_id "ERVLE_14q11.2c"; locus "ERVLE_14q11.2c"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_2975"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### HERVW_14q11.2 ### chr14 rmsk gene 22236551 22244186 . + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0248"; model_cov "6347"; model_pct "73.6"; chr14 rmsk exon 22236551 22237138 4529 + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0248"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "203"; chr14 rmsk exon 22237139 22243081 44230 + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0248"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chr14 rmsk exon 22243075 22243113 303 + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0248"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr14 rmsk exon 22243104 22243396 2362 + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0248"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr14 rmsk exon 22243397 22244186 6925 + . gene_id "HERVW_14q11.2"; transcript_id "HERVW_14q11.2"; locus "HERVW_14q11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0248"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_14q11.2g ### chr14 rmsk gene 22266973 22269032 . + . gene_id "ERV316A3_14q11.2g"; transcript_id "ERV316A3_14q11.2g"; locus "ERV316A3_14q11.2g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2258"; model_cov "1368"; model_pct "26.2"; chr14 rmsk exon 22266973 22267228 2850 + . gene_id "ERV316A3_14q11.2g"; transcript_id "ERV316A3_14q11.2g"; locus "ERV316A3_14q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2258"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "-1218"; repStart "3755"; chr14 rmsk exon 22267550 22268661 2850 + . gene_id "ERV316A3_14q11.2g"; transcript_id "ERV316A3_14q11.2g"; locus "ERV316A3_14q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2258"; repClass "LTR"; repEnd "5124"; repFamily "ERVL"; repLeft "-102"; repStart "4009"; chr14 rmsk exon 22268752 22269032 774 + . gene_id "ERV316A3_14q11.2g"; transcript_id "ERV316A3_14q11.2g"; locus "ERV316A3_14q11.2g"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2258"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "-192"; repStart "1"; ### ERV316A3_14q11.2h ### chr14 rmsk gene 22272947 22274203 . + . gene_id "ERV316A3_14q11.2h"; transcript_id "ERV316A3_14q11.2h"; locus "ERV316A3_14q11.2h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2259"; model_cov "675"; model_pct "12.9"; chr14 rmsk exon 22272947 22273690 1125 + . gene_id "ERV316A3_14q11.2h"; transcript_id "ERV316A3_14q11.2h"; locus "ERV316A3_14q11.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2259"; repClass "LTR"; repEnd "4612"; repFamily "ERVL"; repLeft "-614"; repStart "3937"; chr14 rmsk exon 22273904 22273949 924 + . gene_id "ERV316A3_14q11.2h"; transcript_id "ERV316A3_14q11.2h"; locus "ERV316A3_14q11.2h"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2259"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-392"; repStart "90"; chr14 rmsk exon 22273984 22274203 924 + . gene_id "ERV316A3_14q11.2h"; transcript_id "ERV316A3_14q11.2h"; locus "ERV316A3_14q11.2h"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2259"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "-173"; repStart "147"; ### ERVLE_14q11.2d ### chr14 rmsk gene 22369972 22372430 . - . gene_id "ERVLE_14q11.2d"; transcript_id "ERVLE_14q11.2d"; locus "ERVLE_14q11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2977"; model_cov "2630"; model_pct "46.4"; chr14 rmsk exon 22369972 22371515 6071 - . gene_id "ERVLE_14q11.2d"; transcript_id "ERVLE_14q11.2d"; locus "ERVLE_14q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2977"; repClass "LTR"; repEnd "3347"; repFamily "ERVL"; repLeft "1767"; repStart "-2320"; chr14 rmsk exon 22371524 22371829 898 - . gene_id "ERVLE_14q11.2d"; transcript_id "ERVLE_14q11.2d"; locus "ERVLE_14q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2977"; repClass "LTR"; repEnd "917"; repFamily "ERVL"; repLeft "503"; repStart "-4750"; chr14 rmsk exon 22371868 22371954 270 - . gene_id "ERVLE_14q11.2d"; transcript_id "ERVLE_14q11.2d"; locus "ERVLE_14q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2977"; repClass "LTR"; repEnd "900"; repFamily "ERVL"; repLeft "805"; repStart "-4767"; chr14 rmsk exon 22371955 22372430 1380 - . gene_id "ERVLE_14q11.2d"; transcript_id "ERVLE_14q11.2d"; locus "ERVLE_14q11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2977"; repClass "LTR"; repEnd "544"; repFamily "ERVL"; repLeft "3"; repStart "-5123"; ### MER4_14q11.2f ### chr14 rmsk gene 23199081 23208143 . - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0648"; model_cov "4706"; model_pct "71.3"; chr14 rmsk exon 23199081 23199522 3250 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0648"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 23199530 23200332 15309 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5775"; repStart "-2"; chr14 rmsk exon 23200626 23201968 15309 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "5774"; repFamily "ERV1"; repLeft "4399"; repStart "-824"; chr14 rmsk exon 23202269 23202569 15309 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "4398"; repFamily "ERV1"; repLeft "4094"; repStart "-2200"; chr14 rmsk exon 23202870 23202959 15309 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "4093"; repFamily "ERV1"; repLeft "4012"; repStart "-2505"; chr14 rmsk exon 23204930 23205038 567 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "4023"; repFamily "ERV1"; repLeft "3918"; repStart "-2575"; chr14 rmsk exon 23205016 23205527 2564 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "3261"; repFamily "ERV1"; repLeft "2737"; repStart "-3337"; chr14 rmsk exon 23205773 23206083 4230 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2163"; repStart "-4103"; chr14 rmsk exon 23206373 23206776 4230 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "2162"; repFamily "ERV1"; repLeft "1771"; repStart "-4436"; chr14 rmsk exon 23206775 23207132 1378 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "993"; repStart "-5330"; chr14 rmsk exon 23207124 23207675 2795 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0648"; repClass "LTR"; repEnd "-1173"; repFamily "ERV1"; repLeft "-1671"; repStart "-7771"; chr14 rmsk exon 23207679 23208143 3588 - . gene_id "MER4_14q11.2f"; transcript_id "MER4_14q11.2f"; locus "MER4_14q11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0648"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_14q11.2g ### chr14 rmsk gene 23335608 23337068 . + . gene_id "MER4_14q11.2g"; transcript_id "MER4_14q11.2g"; locus "MER4_14q11.2g"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0649"; model_cov "1147"; model_pct "17.4"; chr14 rmsk exon 23335608 23336013 3242 + . gene_id "MER4_14q11.2g"; transcript_id "MER4_14q11.2g"; locus "MER4_14q11.2g"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0649"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "220"; chr14 rmsk exon 23336017 23336610 2732 + . gene_id "MER4_14q11.2g"; transcript_id "MER4_14q11.2g"; locus "MER4_14q11.2g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0649"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr14 rmsk exon 23336579 23336695 379 + . gene_id "MER4_14q11.2g"; transcript_id "MER4_14q11.2g"; locus "MER4_14q11.2g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0649"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-739"; chr14 rmsk exon 23336725 23337068 1412 + . gene_id "MER4_14q11.2g"; transcript_id "MER4_14q11.2g"; locus "MER4_14q11.2g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0649"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2129"; ### MER4B_14q11.2b ### chr14 rmsk gene 23337068 23345236 . + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0355"; model_cov "6990"; model_pct "100.0"; chr14 rmsk exon 23337068 23337151 8277 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "262"; repFamily "ERV1"; repLeft "-6496"; repStart "189"; chr14 rmsk exon 23337443 23338858 8277 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "1780"; repFamily "ERV1"; repLeft "-4978"; repStart "263"; chr14 rmsk exon 23339242 23339848 6551 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "2388"; repFamily "ERV1"; repLeft "-4370"; repStart "1777"; chr14 rmsk exon 23340220 23341898 8904 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "4434"; repFamily "ERV1"; repLeft "-2324"; repStart "2389"; chr14 rmsk exon 23342173 23342277 8904 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "4435"; repFamily "ERV1"; repLeft "-2323"; repStart "4275"; chr14 rmsk exon 23342380 23343346 8904 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "5931"; repFamily "ERV1"; repLeft "-827"; repStart "4436"; chr14 rmsk exon 23343319 23343860 6522 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "6208"; repFamily "ERV1"; repLeft "-550"; repStart "5668"; chr14 rmsk exon 23344140 23344650 6522 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6209"; chr14 rmsk exon 23344651 23345236 3406 + . gene_id "MER4B_14q11.2b"; transcript_id "MER4B_14q11.2b"; locus "MER4B_14q11.2b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0355"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFRD_14q11.2 ### chr14 rmsk gene 23621446 23628074 . + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0144"; model_cov "5401"; model_pct "75.0"; chr14 rmsk exon 23621446 23622084 2362 + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0144"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr14 rmsk exon 23622086 23623833 6454 + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0144"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "8"; chr14 rmsk exon 23623828 23627052 17767 + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0144"; repClass "LTR"; repEnd "6028"; repFamily "ERV1"; repLeft "-1177"; repStart "2787"; chr14 rmsk exon 23627051 23627374 2530 + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0144"; repClass "LTR"; repEnd "7200"; repFamily "ERV1"; repLeft "-5"; repStart "6882"; chr14 rmsk exon 23627375 23628074 4598 + . gene_id "HERVFRD_14q11.2"; transcript_id "HERVFRD_14q11.2"; locus "HERVFRD_14q11.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0144"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "3"; ### HERV3_14q11.2 ### chr14 rmsk gene 23692552 23698968 . + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0053"; model_cov "4836"; model_pct "57.4"; chr14 rmsk exon 23692552 23693117 4299 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 23693136 23695235 7373 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "2080"; repFamily "ERV1"; repLeft "-6346"; repStart "19"; chr14 rmsk exon 23695610 23696012 1957 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "-5950"; repStart "2069"; chr14 rmsk exon 23695986 23696142 643 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "3827"; repFamily "ERV1"; repLeft "-4599"; repStart "3678"; chr14 rmsk exon 23696148 23697805 8590 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "6874"; repFamily "ERV1"; repLeft "-1552"; repStart "5162"; chr14 rmsk exon 23697889 23698398 3007 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "7919"; chr14 rmsk exon 23698401 23698968 4411 + . gene_id "HERV3_14q11.2"; transcript_id "HERV3_14q11.2"; locus "HERV3_14q11.2"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0053"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_14q11.2e ### chr14 rmsk gene 23715441 23716312 . + . gene_id "ERVLE_14q11.2e"; transcript_id "ERVLE_14q11.2e"; locus "ERVLE_14q11.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2978"; model_cov "884"; model_pct "15.6"; chr14 rmsk exon 23715441 23716312 2798 + . gene_id "ERVLE_14q11.2e"; transcript_id "ERVLE_14q11.2e"; locus "ERVLE_14q11.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2978"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "-3543"; repStart "1240"; ### MER41_14q11.2c ### chr14 rmsk gene 23790591 23795497 . - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0428"; model_cov "4597"; model_pct "77.3"; chr14 rmsk exon 23790591 23790764 1326 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0428"; repClass "LTR"; repEnd "174"; repFamily "ERV1"; repLeft "1"; repStart "-380"; chr14 rmsk exon 23790766 23791921 7477 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0428"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "4767"; repStart "-3"; chr14 rmsk exon 23792133 23792492 7315 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0428"; repClass "LTR"; repEnd "4898"; repFamily "ERV1"; repLeft "4551"; repStart "-1048"; chr14 rmsk exon 23792800 23794127 7315 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0428"; repClass "LTR"; repEnd "3757"; repFamily "ERV1"; repLeft "1420"; repStart "-2189"; chr14 rmsk exon 23794159 23794288 784 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0428"; repClass "LTR"; repEnd "225"; repFamily "ERV1"; repLeft "111"; repStart "-5721"; chr14 rmsk exon 23794260 23794876 4077 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0428"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "1"; repStart "-5322"; chr14 rmsk exon 23794962 23795497 4001 - . gene_id "MER41_14q11.2c"; transcript_id "MER41_14q11.2c"; locus "MER41_14q11.2c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0428"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_14q11.2f ### chr14 rmsk gene 23832436 23833330 . + . gene_id "ERVLE_14q11.2f"; transcript_id "ERVLE_14q11.2f"; locus "ERVLE_14q11.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2979"; model_cov "609"; model_pct "10.7"; chr14 rmsk exon 23832436 23832811 1143 + . gene_id "ERVLE_14q11.2f"; transcript_id "ERVLE_14q11.2f"; locus "ERVLE_14q11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2979"; repClass "LTR"; repEnd "3286"; repFamily "ERVL"; repLeft "-2381"; repStart "2902"; chr14 rmsk exon 23833105 23833330 1143 + . gene_id "ERVLE_14q11.2f"; transcript_id "ERVLE_14q11.2f"; locus "ERVLE_14q11.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2979"; repClass "LTR"; repEnd "3512"; repFamily "ERVL"; repLeft "-2155"; repStart "3287"; ### MER4B_14q11.2c ### chr14 rmsk gene 23840405 23841424 . + . gene_id "MER4B_14q11.2c"; transcript_id "MER4B_14q11.2c"; locus "MER4B_14q11.2c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0357"; model_cov "1024"; model_pct "15.2"; chr14 rmsk exon 23840405 23841424 3240 + . gene_id "MER4B_14q11.2c"; transcript_id "MER4B_14q11.2c"; locus "MER4B_14q11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0357"; repClass "LTR"; repEnd "4448"; repFamily "ERV1"; repLeft "-2310"; repStart "3424"; ### ERVLE_14q11.2g ### chr14 rmsk gene 23863051 23864124 . - . gene_id "ERVLE_14q11.2g"; transcript_id "ERVLE_14q11.2g"; locus "ERVLE_14q11.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2980"; model_cov "1112"; model_pct "19.6"; chr14 rmsk exon 23863051 23863974 1592 - . gene_id "ERVLE_14q11.2g"; transcript_id "ERVLE_14q11.2g"; locus "ERVLE_14q11.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2980"; repClass "LTR"; repEnd "4985"; repFamily "ERVL"; repLeft "4025"; repStart "-682"; chr14 rmsk exon 23863975 23864124 445 - . gene_id "ERVLE_14q11.2g"; transcript_id "ERVLE_14q11.2g"; locus "ERVLE_14q11.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2980"; repClass "LTR"; repEnd "4292"; repFamily "ERVL"; repLeft "4140"; repStart "-1375"; ### HML2_14q11.2 ### chr14 rmsk gene 24009696 24015776 . - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0099"; model_cov "3838"; model_pct "50.9"; chr14 rmsk exon 24009696 24010720 8164 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr14 rmsk exon 24010723 24010906 1116 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "7351"; repStart "-2"; chr14 rmsk exon 24011391 24015051 21036 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "3656"; repFamily "ERVK"; repLeft "1"; repStart "-3880"; chr14 rmsk exon 24015052 24015776 5820 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "308"; repStart "0"; ### ERVLE_14q12a ### chr14 rmsk gene 24471775 24472610 . - . gene_id "ERVLE_14q12a"; transcript_id "ERVLE_14q12a"; locus "ERVLE_14q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2983"; model_cov "831"; model_pct "14.7"; chr14 rmsk exon 24471775 24472267 1508 - . gene_id "ERVLE_14q12a"; transcript_id "ERVLE_14q12a"; locus "ERVLE_14q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2983"; repClass "LTR"; repEnd "3369"; repFamily "ERVL"; repLeft "2886"; repStart "-2298"; chr14 rmsk exon 24472275 24472610 635 - . gene_id "ERVLE_14q12a"; transcript_id "ERVLE_14q12a"; locus "ERVLE_14q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2983"; repClass "LTR"; repEnd "3010"; repFamily "ERVL"; repLeft "2662"; repStart "-2657"; ### ERVLE_14q12b ### chr14 rmsk gene 24501756 24503008 . + . gene_id "ERVLE_14q12b"; transcript_id "ERVLE_14q12b"; locus "ERVLE_14q12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2984"; model_cov "1266"; model_pct "22.3"; chr14 rmsk exon 24501756 24503008 2902 + . gene_id "ERVLE_14q12b"; transcript_id "ERVLE_14q12b"; locus "ERVLE_14q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2984"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "-409"; repStart "3992"; ### ERVLE_14q12c ### chr14 rmsk gene 24555982 24559481 . - . gene_id "ERVLE_14q12c"; transcript_id "ERVLE_14q12c"; locus "ERVLE_14q12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2986"; model_cov "1776"; model_pct "31.3"; chr14 rmsk exon 24555982 24556264 741 - . gene_id "ERVLE_14q12c"; transcript_id "ERVLE_14q12c"; locus "ERVLE_14q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2986"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "3288"; repStart "-2078"; chr14 rmsk exon 24556923 24557939 2557 - . gene_id "ERVLE_14q12c"; transcript_id "ERVLE_14q12c"; locus "ERVLE_14q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2986"; repClass "LTR"; repEnd "3208"; repFamily "ERVL"; repLeft "2159"; repStart "-2459"; chr14 rmsk exon 24558773 24558950 427 - . gene_id "ERVLE_14q12c"; transcript_id "ERVLE_14q12c"; locus "ERVLE_14q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2986"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "1784"; repStart "-3693"; chr14 rmsk exon 24559247 24559481 427 - . gene_id "ERVLE_14q12c"; transcript_id "ERVLE_14q12c"; locus "ERVLE_14q12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2986"; repClass "LTR"; repEnd "1783"; repFamily "ERVL"; repLeft "1547"; repStart "-3884"; ### ERVLE_14q12d ### chr14 rmsk gene 24626989 24628062 . - . gene_id "ERVLE_14q12d"; transcript_id "ERVLE_14q12d"; locus "ERVLE_14q12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2987"; model_cov "655"; model_pct "11.6"; chr14 rmsk exon 24626989 24627165 513 - . gene_id "ERVLE_14q12d"; transcript_id "ERVLE_14q12d"; locus "ERVLE_14q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2987"; repClass "LTR"; repEnd "4813"; repFamily "ERVL"; repLeft "4622"; repStart "-854"; chr14 rmsk exon 24627450 24627564 513 - . gene_id "ERVLE_14q12d"; transcript_id "ERVLE_14q12d"; locus "ERVLE_14q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2987"; repClass "LTR"; repEnd "4621"; repFamily "ERVL"; repLeft "4506"; repStart "-1046"; chr14 rmsk exon 24627735 24628062 364 - . gene_id "ERVLE_14q12d"; transcript_id "ERVLE_14q12d"; locus "ERVLE_14q12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2987"; repClass "LTR"; repEnd "920"; repFamily "ERVL"; repLeft "571"; repStart "-4747"; ### HERVL_14q12a ### chr14 rmsk gene 25281051 25287433 . - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1066"; model_cov "5528"; model_pct "97.8"; chr14 rmsk exon 25281051 25281546 2869 - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1066"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-110"; repStart "-9"; chr14 rmsk exon 25281547 25286084 35754 - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1066"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1070"; repStart "0"; chr14 rmsk exon 25286085 25286913 6064 - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1066"; repClass "LTR"; repEnd "945"; repFamily "ERVL"; repLeft "1"; repStart "-4709"; chr14 rmsk exon 25286914 25286980 230 - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1066"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chr14 rmsk exon 25287042 25287433 2639 - . gene_id "HERVL_14q12a"; transcript_id "HERVL_14q12a"; locus "HERVL_14q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1066"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "1"; repStart "-46"; ### ERVLE_14q12e ### chr14 rmsk gene 25296425 25298099 . - . gene_id "ERVLE_14q12e"; transcript_id "ERVLE_14q12e"; locus "ERVLE_14q12e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2989"; model_cov "1369"; model_pct "24.2"; chr14 rmsk exon 25296425 25296659 1967 - . gene_id "ERVLE_14q12e"; transcript_id "ERVLE_14q12e"; locus "ERVLE_14q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2989"; repClass "LTR"; repEnd "2121"; repFamily "ERVL"; repLeft "1909"; repStart "-3546"; chr14 rmsk exon 25296991 25298099 1967 - . gene_id "ERVLE_14q12e"; transcript_id "ERVLE_14q12e"; locus "ERVLE_14q12e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2989"; repClass "LTR"; repEnd "1987"; repFamily "ERVL"; repLeft "830"; repStart "-3680"; ### HERVH_14q12a ### chr14 rmsk gene 25425572 25429122 . - . gene_id "HERVH_14q12a"; transcript_id "HERVH_14q12a"; locus "HERVH_14q12a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1009"; model_cov "3295"; model_pct "42.7"; chr14 rmsk exon 25425572 25425945 2032 - . gene_id "HERVH_14q12a"; transcript_id "HERVH_14q12a"; locus "HERVH_14q12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1009"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 25425946 25427149 3353 - . gene_id "HERVH_14q12a"; transcript_id "HERVH_14q12a"; locus "HERVH_14q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1009"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6489"; repStart "0"; chr14 rmsk exon 25427150 25427610 2364 - . gene_id "HERVH_14q12a"; transcript_id "HERVH_14q12a"; locus "HERVH_14q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1009"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "4043"; repStart "-3184"; chr14 rmsk exon 25427609 25429122 8946 - . gene_id "HERVH_14q12a"; transcript_id "HERVH_14q12a"; locus "HERVH_14q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1009"; repClass "LTR"; repEnd "3398"; repFamily "ERV1"; repLeft "1813"; repStart "-4315"; ### HERVH_14q12b ### chr14 rmsk gene 25429279 25430929 . - . gene_id "HERVH_14q12b"; transcript_id "HERVH_14q12b"; locus "HERVH_14q12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1010"; model_cov "1260"; model_pct "16.3"; chr14 rmsk exon 25429279 25429941 8946 - . gene_id "HERVH_14q12b"; transcript_id "HERVH_14q12b"; locus "HERVH_14q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1010"; repClass "LTR"; repEnd "3398"; repFamily "ERV1"; repLeft "2703"; repStart "-4315"; chr14 rmsk exon 25429936 25430053 501 - . gene_id "HERVH_14q12b"; transcript_id "HERVH_14q12b"; locus "HERVH_14q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1010"; repClass "LTR"; repEnd "918"; repFamily "ERV1"; repLeft "800"; repStart "-6795"; chr14 rmsk exon 25430112 25430527 1614 - . gene_id "HERVH_14q12b"; transcript_id "HERVH_14q12b"; locus "HERVH_14q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1010"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "12"; repStart "-7254"; chr14 rmsk exon 25430540 25430929 1707 - . gene_id "HERVH_14q12b"; transcript_id "HERVH_14q12b"; locus "HERVH_14q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1010"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_14q12 ### chr14 rmsk gene 25645516 25649887 . - . gene_id "PABLA_14q12"; transcript_id "PABLA_14q12"; locus "PABLA_14q12"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0124"; model_cov "5941"; model_pct "100.0"; chr14 rmsk exon 25645516 25649887 14031 - . gene_id "PABLA_14q12"; transcript_id "PABLA_14q12"; locus "PABLA_14q12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0124"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "-930"; repStart "-4"; ### ERV316A3_14q12a ### chr14 rmsk gene 25659578 25659914 . - . gene_id "ERV316A3_14q12a"; transcript_id "ERV316A3_14q12a"; locus "ERV316A3_14q12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2262"; model_cov "560"; model_pct "10.7"; chr14 rmsk exon 25659578 25659914 1075 - . gene_id "ERV316A3_14q12a"; transcript_id "ERV316A3_14q12a"; locus "ERV316A3_14q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2262"; repClass "LTR"; repEnd "3883"; repFamily "ERVL"; repLeft "3323"; repStart "-1343"; ### ERV316A3_14q12b ### chr14 rmsk gene 25796936 25799750 . + . gene_id "ERV316A3_14q12b"; transcript_id "ERV316A3_14q12b"; locus "ERV316A3_14q12b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2263"; model_cov "1166"; model_pct "22.3"; chr14 rmsk exon 25796936 25797423 920 + . gene_id "ERV316A3_14q12b"; transcript_id "ERV316A3_14q12b"; locus "ERV316A3_14q12b"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2263"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "-17"; repStart "1"; chr14 rmsk exon 25797880 25798552 1156 + . gene_id "ERV316A3_14q12b"; transcript_id "ERV316A3_14q12b"; locus "ERV316A3_14q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2263"; repClass "LTR"; repEnd "4580"; repFamily "ERVL"; repLeft "-646"; repStart "3894"; chr14 rmsk exon 25798772 25799227 757 + . gene_id "ERV316A3_14q12b"; transcript_id "ERV316A3_14q12b"; locus "ERV316A3_14q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2263"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "-96"; repStart "4650"; chr14 rmsk exon 25799301 25799750 574 + . gene_id "ERV316A3_14q12b"; transcript_id "ERV316A3_14q12b"; locus "ERV316A3_14q12b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2263"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-19"; repStart "1"; ### ERV316A3_14q12c ### chr14 rmsk gene 26093796 26095151 . + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2264"; model_cov "908"; model_pct "17.4"; chr14 rmsk exon 26093796 26093936 381 + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2264"; repClass "LTR"; repEnd "3429"; repFamily "ERVL"; repLeft "-1797"; repStart "3286"; chr14 rmsk exon 26093981 26094166 477 + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2264"; repClass "LTR"; repEnd "3717"; repFamily "ERVL"; repLeft "-1509"; repStart "3513"; chr14 rmsk exon 26094172 26094402 598 + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2264"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "-465"; repStart "4533"; chr14 rmsk exon 26094430 26094765 816 + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2264"; repClass "LTR"; repEnd "5192"; repFamily "ERVL"; repLeft "-34"; repStart "4859"; chr14 rmsk exon 26094822 26095151 848 + . gene_id "ERV316A3_14q12c"; transcript_id "ERV316A3_14q12c"; locus "ERV316A3_14q12c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2264"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "-22"; repStart "103"; ### ERVLE_14q12f ### chr14 rmsk gene 26191688 26192988 . + . gene_id "ERVLE_14q12f"; transcript_id "ERVLE_14q12f"; locus "ERVLE_14q12f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2990"; model_cov "1349"; model_pct "23.8"; chr14 rmsk exon 26191688 26192988 2069 + . gene_id "ERVLE_14q12f"; transcript_id "ERVLE_14q12f"; locus "ERVLE_14q12f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2990"; repClass "LTR"; repEnd "1353"; repFamily "ERVL"; repLeft "-4314"; repStart "4"; ### ERVLE_14q12g ### chr14 rmsk gene 26308009 26308569 . + . gene_id "ERVLE_14q12g"; transcript_id "ERVLE_14q12g"; locus "ERVLE_14q12g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2992"; model_cov "575"; model_pct "10.1"; chr14 rmsk exon 26308009 26308569 514 + . gene_id "ERVLE_14q12g"; transcript_id "ERVLE_14q12g"; locus "ERVLE_14q12g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2992"; repClass "LTR"; repEnd "598"; repFamily "ERVL"; repLeft "-5069"; repStart "23"; ### ERVLE_14q12h ### chr14 rmsk gene 26315065 26316549 . + . gene_id "ERVLE_14q12h"; transcript_id "ERVLE_14q12h"; locus "ERVLE_14q12h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2993"; model_cov "1423"; model_pct "25.1"; chr14 rmsk exon 26315065 26315974 2274 + . gene_id "ERVLE_14q12h"; transcript_id "ERVLE_14q12h"; locus "ERVLE_14q12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2993"; repClass "LTR"; repEnd "1574"; repFamily "ERVL"; repLeft "-4093"; repStart "657"; chr14 rmsk exon 26316082 26316549 851 + . gene_id "ERVLE_14q12h"; transcript_id "ERVLE_14q12h"; locus "ERVLE_14q12h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2993"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-3138"; repStart "2023"; ### HERVL40_14q12 ### chr14 rmsk gene 26526996 26528062 . + . gene_id "HERVL40_14q12"; transcript_id "HERVL40_14q12"; locus "HERVL40_14q12"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0369"; model_cov "877"; model_pct "15.9"; chr14 rmsk exon 26526996 26527460 560 + . gene_id "HERVL40_14q12"; transcript_id "HERVL40_14q12"; locus "HERVL40_14q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0369"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2039"; repStart "3024"; chr14 rmsk exon 26527657 26528062 327 + . gene_id "HERVL40_14q12"; transcript_id "HERVL40_14q12"; locus "HERVL40_14q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0369"; repClass "LTR"; repEnd "3686"; repFamily "ERVL"; repLeft "-1844"; repStart "3276"; ### ERVLB4_14q12a ### chr14 rmsk gene 26992464 26995968 . - . gene_id "ERVLB4_14q12a"; transcript_id "ERVLB4_14q12a"; locus "ERVLB4_14q12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1421"; model_cov "3062"; model_pct "53.6"; chr14 rmsk exon 26992464 26992681 1352 - . gene_id "ERVLB4_14q12a"; transcript_id "ERVLB4_14q12a"; locus "ERVLB4_14q12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1421"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "1"; repStart "-326"; chr14 rmsk exon 26992682 26993114 16947 - . gene_id "ERVLB4_14q12a"; transcript_id "ERVLB4_14q12a"; locus "ERVLB4_14q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1421"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5276"; repStart "0"; chr14 rmsk exon 26993386 26995968 16947 - . gene_id "ERVLB4_14q12a"; transcript_id "ERVLB4_14q12a"; locus "ERVLB4_14q12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1421"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "2651"; repStart "-439"; ### ERVLE_14q12i ### chr14 rmsk gene 27101545 27104137 . - . gene_id "ERVLE_14q12i"; transcript_id "ERVLE_14q12i"; locus "ERVLE_14q12i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2996"; model_cov "1598"; model_pct "28.2"; chr14 rmsk exon 27101545 27102389 945 - . gene_id "ERVLE_14q12i"; transcript_id "ERVLE_14q12i"; locus "ERVLE_14q12i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2996"; repClass "LTR"; repEnd "5622"; repFamily "ERVL"; repLeft "4873"; repStart "-45"; chr14 rmsk exon 27102730 27103289 1289 - . gene_id "ERVLE_14q12i"; transcript_id "ERVLE_14q12i"; locus "ERVLE_14q12i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2996"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "3758"; repStart "-1347"; chr14 rmsk exon 27103880 27104137 1289 - . gene_id "ERVLE_14q12i"; transcript_id "ERVLE_14q12i"; locus "ERVLE_14q12i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2996"; repClass "LTR"; repEnd "3757"; repFamily "ERVL"; repLeft "3470"; repStart "-1910"; ### HERVL_14q12b ### chr14 rmsk gene 27117713 27122925 . - . gene_id "HERVL_14q12b"; transcript_id "HERVL_14q12b"; locus "HERVL_14q12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1068"; model_cov "4444"; model_pct "78.6"; chr14 rmsk exon 27117713 27118213 2718 - . gene_id "HERVL_14q12b"; transcript_id "HERVL_14q12b"; locus "HERVL_14q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1068"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-70"; repStart "0"; chr14 rmsk exon 27118214 27122196 16652 - . gene_id "HERVL_14q12b"; transcript_id "HERVL_14q12b"; locus "HERVL_14q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1068"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1476"; repStart "0"; chr14 rmsk exon 27122196 27122467 1918 - . gene_id "HERVL_14q12b"; transcript_id "HERVL_14q12b"; locus "HERVL_14q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1068"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "4"; repStart "-5384"; chr14 rmsk exon 27122468 27122925 2907 - . gene_id "HERVL_14q12b"; transcript_id "HERVL_14q12b"; locus "HERVL_14q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1068"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "3"; repStart "-3"; ### ERVL_14q12 ### chr14 rmsk gene 27316004 27317310 . + . gene_id "ERVL_14q12"; transcript_id "ERVL_14q12"; locus "ERVL_14q12"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0361"; model_cov "836"; model_pct "14.5"; chr14 rmsk exon 27316004 27316472 419 + . gene_id "ERVL_14q12"; transcript_id "ERVL_14q12"; locus "ERVL_14q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0361"; repClass "LTR"; repEnd "5039"; repFamily "ERVL"; repLeft "-718"; repStart "4490"; chr14 rmsk exon 27317047 27317310 460 + . gene_id "ERVL_14q12"; transcript_id "ERVL_14q12"; locus "ERVL_14q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0361"; repClass "LTR"; repEnd "5373"; repFamily "ERVL"; repLeft "-384"; repStart "5086"; ### ERV316A3_14q12d ### chr14 rmsk gene 27452834 27455091 . - . gene_id "ERV316A3_14q12d"; transcript_id "ERV316A3_14q12d"; locus "ERV316A3_14q12d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2265"; model_cov "2054"; model_pct "39.3"; chr14 rmsk exon 27452834 27454865 3929 - . gene_id "ERV316A3_14q12d"; transcript_id "ERV316A3_14q12d"; locus "ERV316A3_14q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2265"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "27"; repStart "-3145"; chr14 rmsk exon 27454958 27455091 473 - . gene_id "ERV316A3_14q12d"; transcript_id "ERV316A3_14q12d"; locus "ERV316A3_14q12d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2265"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "256"; repStart "-91"; ### HERVL74_14q12 ### chr14 rmsk gene 27514656 27516120 . - . gene_id "HERVL74_14q12"; transcript_id "HERVL74_14q12"; locus "HERVL74_14q12"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0084"; model_cov "739"; model_pct "13.0"; chr14 rmsk exon 27514656 27515385 3430 - . gene_id "HERVL74_14q12"; transcript_id "HERVL74_14q12"; locus "HERVL74_14q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0084"; repClass "LTR"; repEnd "4230"; repFamily "ERVL"; repLeft "3491"; repStart "-1455"; chr14 rmsk exon 27515709 27516120 656 - . gene_id "HERVL74_14q12"; transcript_id "HERVL74_14q12"; locus "HERVL74_14q12"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0084"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-96"; repStart "-30"; ### ERVLE_14q12j ### chr14 rmsk gene 27535372 27536459 . - . gene_id "ERVLE_14q12j"; transcript_id "ERVLE_14q12j"; locus "ERVLE_14q12j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_2998"; model_cov "1033"; model_pct "18.2"; chr14 rmsk exon 27535372 27535593 343 - . gene_id "ERVLE_14q12j"; transcript_id "ERVLE_14q12j"; locus "ERVLE_14q12j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2998"; repClass "LTR"; repEnd "4279"; repFamily "ERVL"; repLeft "4046"; repStart "-1388"; chr14 rmsk exon 27535660 27536459 1331 - . gene_id "ERVLE_14q12j"; transcript_id "ERVLE_14q12j"; locus "ERVLE_14q12j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_2998"; repClass "LTR"; repEnd "3653"; repFamily "ERVL"; repLeft "2853"; repStart "-2014"; ### MER4_14q12a ### chr14 rmsk gene 27606560 27608087 . + . gene_id "MER4_14q12a"; transcript_id "MER4_14q12a"; locus "MER4_14q12a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0651"; model_cov "1065"; model_pct "16.1"; chr14 rmsk exon 27606560 27607079 3259 + . gene_id "MER4_14q12a"; transcript_id "MER4_14q12a"; locus "MER4_14q12a"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0651"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr14 rmsk exon 27607083 27607666 2630 + . gene_id "MER4_14q12a"; transcript_id "MER4_14q12a"; locus "MER4_14q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0651"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-5913"; repStart "1"; chr14 rmsk exon 27607655 27607735 400 + . gene_id "MER4_14q12a"; transcript_id "MER4_14q12a"; locus "MER4_14q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0651"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-7241"; repStart "-722"; chr14 rmsk exon 27607793 27608087 1209 + . gene_id "MER4_14q12a"; transcript_id "MER4_14q12a"; locus "MER4_14q12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0651"; repClass "LTR"; repEnd "2413"; repFamily "ERV1"; repLeft "-4185"; repStart "2111"; ### MER4B_14q12 ### chr14 rmsk gene 27608134 27614823 . + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0358"; model_cov "6031"; model_pct "89.2"; chr14 rmsk exon 27608134 27611827 18277 + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0358"; repClass "LTR"; repEnd "3922"; repFamily "ERV1"; repLeft "-2836"; repStart "189"; chr14 rmsk exon 27611830 27612284 9410 + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0358"; repClass "LTR"; repEnd "4731"; repFamily "ERV1"; repLeft "-2027"; repStart "4275"; chr14 rmsk exon 27612882 27613894 9410 + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0358"; repClass "LTR"; repEnd "5731"; repFamily "ERV1"; repLeft "-1027"; repStart "4732"; chr14 rmsk exon 27613894 27614693 2777 + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0358"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "5915"; chr14 rmsk exon 27614738 27614823 603 + . gene_id "MER4B_14q12"; transcript_id "MER4B_14q12"; locus "MER4B_14q12"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0358"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "525"; ### ERVLB4_14q12b ### chr14 rmsk gene 27952923 27959228 . - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1422"; model_cov "4884"; model_pct "85.5"; chr14 rmsk exon 27952923 27953325 1301 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "37"; repStart "-89"; chr14 rmsk exon 27953330 27955926 14119 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "3016"; repStart "-4"; chr14 rmsk exon 27955933 27956588 3457 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "2801"; repFamily "ERVL"; repLeft "2119"; repStart "-2913"; chr14 rmsk exon 27956592 27956796 955 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "1569"; repStart "-3920"; chr14 rmsk exon 27956791 27957835 6457 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "208"; repStart "-4428"; chr14 rmsk exon 27957922 27958127 6457 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "207"; repFamily "ERVL"; repLeft "2"; repStart "-5507"; chr14 rmsk exon 27958803 27959228 1938 - . gene_id "ERVLB4_14q12b"; transcript_id "ERVLB4_14q12b"; locus "ERVLB4_14q12b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1422"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "6"; repStart "-113"; ### MER41_14q12 ### chr14 rmsk gene 28185469 28187376 . + . gene_id "MER41_14q12"; transcript_id "MER41_14q12"; locus "MER41_14q12"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0429"; model_cov "1402"; model_pct "23.6"; chr14 rmsk exon 28185469 28186826 9213 + . gene_id "MER41_14q12"; transcript_id "MER41_14q12"; locus "MER41_14q12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0429"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "4543"; chr14 rmsk exon 28186828 28187376 3724 + . gene_id "MER41_14q12"; transcript_id "MER41_14q12"; locus "MER41_14q12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0429"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### HML6_14q12a ### chr14 rmsk gene 28410708 28412587 . + . gene_id "HML6_14q12a"; transcript_id "HML6_14q12a"; locus "HML6_14q12a"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0069"; model_cov "1439"; model_pct "20.0"; chr14 rmsk exon 28410708 28411162 3128 + . gene_id "HML6_14q12a"; transcript_id "HML6_14q12a"; locus "HML6_14q12a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0069"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "-18"; repStart "1"; chr14 rmsk exon 28411179 28412587 9900 + . gene_id "HML6_14q12a"; transcript_id "HML6_14q12a"; locus "HML6_14q12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0069"; repClass "LTR"; repEnd "1440"; repFamily "ERVK"; repLeft "-5762"; repStart "1"; ### HML6_14q12b ### chr14 rmsk gene 28416461 28420773 . + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0070"; model_cov "4063"; model_pct "56.4"; chr14 rmsk exon 28416461 28417614 6514 + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0070"; repClass "LTR"; repEnd "2635"; repFamily "ERVK"; repLeft "-4567"; repStart "1437"; chr14 rmsk exon 28417599 28417869 1555 + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0070"; repClass "LTR"; repEnd "3761"; repFamily "ERVK"; repLeft "-3441"; repStart "3495"; chr14 rmsk exon 28417869 28419776 12592 + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0070"; repClass "LTR"; repEnd "6381"; repFamily "ERVK"; repLeft "-821"; repStart "4470"; chr14 rmsk exon 28419778 28420467 5115 + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0070"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "6512"; chr14 rmsk exon 28420474 28420773 3052 + . gene_id "HML6_14q12b"; transcript_id "HML6_14q12b"; locus "HML6_14q12b"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0070"; repClass "LTR"; repEnd "297"; repFamily "ERVK"; repLeft "-187"; repStart "5"; ### ERV316A3_14q12e ### chr14 rmsk gene 28703002 28708591 . + . gene_id "ERV316A3_14q12e"; transcript_id "ERV316A3_14q12e"; locus "ERV316A3_14q12e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2266"; model_cov "2289"; model_pct "43.8"; chr14 rmsk exon 28703002 28703324 1092 + . gene_id "ERV316A3_14q12e"; transcript_id "ERV316A3_14q12e"; locus "ERV316A3_14q12e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2266"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "150"; chr14 rmsk exon 28703532 28703803 345 + . gene_id "ERV316A3_14q12e"; transcript_id "ERV316A3_14q12e"; locus "ERV316A3_14q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2266"; repClass "LTR"; repEnd "102"; repFamily "ERVL"; repLeft "-5124"; repStart "-169"; chr14 rmsk exon 28704293 28704684 626 + . gene_id "ERV316A3_14q12e"; transcript_id "ERV316A3_14q12e"; locus "ERV316A3_14q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2266"; repClass "LTR"; repEnd "1679"; repFamily "ERVL"; repLeft "-3547"; repStart "1271"; chr14 rmsk exon 28707003 28708591 2483 + . gene_id "ERV316A3_14q12e"; transcript_id "ERV316A3_14q12e"; locus "ERV316A3_14q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2266"; repClass "LTR"; repEnd "3914"; repFamily "ERVL"; repLeft "-1312"; repStart "2304"; ### ERVLE_14q12k ### chr14 rmsk gene 28838742 28839724 . + . gene_id "ERVLE_14q12k"; transcript_id "ERVLE_14q12k"; locus "ERVLE_14q12k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3001"; model_cov "972"; model_pct "17.2"; chr14 rmsk exon 28838742 28839157 934 + . gene_id "ERVLE_14q12k"; transcript_id "ERVLE_14q12k"; locus "ERVLE_14q12k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3001"; repClass "LTR"; repEnd "753"; repFamily "ERVL"; repLeft "-4914"; repStart "340"; chr14 rmsk exon 28839178 28839724 1562 + . gene_id "ERVLE_14q12k"; transcript_id "ERVLE_14q12k"; locus "ERVLE_14q12k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3001"; repClass "LTR"; repEnd "1821"; repFamily "ERVL"; repLeft "-3846"; repStart "1262"; ### ERVLB4_14q12c ### chr14 rmsk gene 28932315 28932889 . - . gene_id "ERVLB4_14q12c"; transcript_id "ERVLB4_14q12c"; locus "ERVLB4_14q12c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1423"; model_cov "591"; model_pct "10.3"; chr14 rmsk exon 28932315 28932889 744 - . gene_id "ERVLB4_14q12c"; transcript_id "ERVLB4_14q12c"; locus "ERVLB4_14q12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1423"; repClass "LTR"; repEnd "5391"; repFamily "ERVL"; repLeft "4800"; repStart "-323"; ### HERVL_14q12c ### chr14 rmsk gene 29170825 29176730 . + . gene_id "HERVL_14q12c"; transcript_id "HERVL_14q12c"; locus "HERVL_14q12c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1070"; model_cov "5011"; model_pct "88.6"; chr14 rmsk exon 29170825 29171264 3059 + . gene_id "HERVL_14q12c"; transcript_id "HERVL_14q12c"; locus "HERVL_14q12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1070"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-11"; repStart "1"; chr14 rmsk exon 29171273 29171664 2807 + . gene_id "HERVL_14q12c"; transcript_id "HERVL_14q12c"; locus "HERVL_14q12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1070"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-5260"; repStart "2"; chr14 rmsk exon 29171663 29176239 36045 + . gene_id "HERVL_14q12c"; transcript_id "HERVL_14q12c"; locus "HERVL_14q12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1070"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1035"; chr14 rmsk exon 29176240 29176730 3186 + . gene_id "HERVL_14q12c"; transcript_id "HERVL_14q12c"; locus "HERVL_14q12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1070"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_14q12f ### chr14 rmsk gene 29299954 29303478 . - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2267"; model_cov "2905"; model_pct "55.6"; chr14 rmsk exon 29299954 29300314 855 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "3463"; repFamily "ERVL"; repLeft "3095"; repStart "-1763"; chr14 rmsk exon 29300382 29300496 378 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2990"; repStart "-2142"; chr14 rmsk exon 29300555 29301431 3400 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "2124"; repStart "-2235"; chr14 rmsk exon 29301420 29301589 563 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "2434"; repFamily "ERVL"; repLeft "2267"; repStart "-2792"; chr14 rmsk exon 29301623 29303047 3517 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "1418"; repFamily "ERVL"; repLeft "9"; repStart "-3808"; chr14 rmsk exon 29303052 29303478 1236 - . gene_id "ERV316A3_14q12f"; transcript_id "ERV316A3_14q12f"; locus "ERV316A3_14q12f"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2267"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_14q12d ### chr14 rmsk gene 29315543 29321926 . + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1424"; model_cov "4733"; model_pct "82.8"; chr14 rmsk exon 29315543 29316145 2166 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "-44"; chr14 rmsk exon 29316146 29317263 4127 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "1199"; repFamily "ERVL"; repLeft "-4515"; repStart "1"; chr14 rmsk exon 29317269 29317494 11882 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "1508"; repFamily "ERVL"; repLeft "-4206"; repStart "1310"; chr14 rmsk exon 29317891 29319726 11882 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-2330"; repStart "1509"; chr14 rmsk exon 29319728 29320355 3270 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "4284"; repFamily "ERVL"; repLeft "-1430"; repStart "3668"; chr14 rmsk exon 29320365 29321109 4948 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-534"; repStart "4437"; chr14 rmsk exon 29321404 29321522 4948 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "-430"; repStart "5181"; chr14 rmsk exon 29321549 29321926 1721 + . gene_id "ERVLB4_14q12d"; transcript_id "ERVLB4_14q12d"; locus "ERVLB4_14q12d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1424"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "-68"; repStart "143"; ### ERV316A3_14q12g ### chr14 rmsk gene 29421654 29422058 . - . gene_id "ERV316A3_14q12g"; transcript_id "ERV316A3_14q12g"; locus "ERV316A3_14q12g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2269"; model_cov "641"; model_pct "12.3"; chr14 rmsk exon 29421654 29422058 951 - . gene_id "ERV316A3_14q12g"; transcript_id "ERV316A3_14q12g"; locus "ERV316A3_14q12g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2269"; repClass "LTR"; repEnd "2841"; repFamily "ERVL"; repLeft "2200"; repStart "-2385"; ### HERV3_14q12 ### chr14 rmsk gene 29648627 29650532 . - . gene_id "HERV3_14q12"; transcript_id "HERV3_14q12"; locus "HERV3_14q12"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0054"; model_cov "1605"; model_pct "19.0"; chr14 rmsk exon 29648627 29648665 808 - . gene_id "HERV3_14q12"; transcript_id "HERV3_14q12"; locus "HERV3_14q12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0054"; repClass "LTR"; repEnd "1887"; repFamily "ERV1"; repLeft "1864"; repStart "-6539"; chr14 rmsk exon 29648954 29649115 808 - . gene_id "HERV3_14q12"; transcript_id "HERV3_14q12"; locus "HERV3_14q12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0054"; repClass "LTR"; repEnd "1863"; repFamily "ERV1"; repLeft "1701"; repStart "-6563"; chr14 rmsk exon 29649105 29649394 841 - . gene_id "HERV3_14q12"; transcript_id "HERV3_14q12"; locus "HERV3_14q12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0054"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "1085"; repStart "-7039"; chr14 rmsk exon 29649466 29650532 2770 - . gene_id "HERV3_14q12"; transcript_id "HERV3_14q12"; locus "HERV3_14q12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0054"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "1"; repStart "-7307"; ### ERVLE_14q12l ### chr14 rmsk gene 29953268 29954626 . + . gene_id "ERVLE_14q12l"; transcript_id "ERVLE_14q12l"; locus "ERVLE_14q12l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3003"; model_cov "1047"; model_pct "18.5"; chr14 rmsk exon 29953268 29953714 594 + . gene_id "ERVLE_14q12l"; transcript_id "ERVLE_14q12l"; locus "ERVLE_14q12l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3003"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-5191"; repStart "25"; chr14 rmsk exon 29953890 29954152 309 + . gene_id "ERVLE_14q12l"; transcript_id "ERVLE_14q12l"; locus "ERVLE_14q12l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3003"; repClass "LTR"; repEnd "960"; repFamily "ERVL"; repLeft "-4707"; repStart "700"; chr14 rmsk exon 29954258 29954335 322 + . gene_id "ERVLE_14q12l"; transcript_id "ERVLE_14q12l"; locus "ERVLE_14q12l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3003"; repClass "LTR"; repEnd "1378"; repFamily "ERVL"; repLeft "-4289"; repStart "1300"; chr14 rmsk exon 29954368 29954626 327 + . gene_id "ERVLE_14q12l"; transcript_id "ERVLE_14q12l"; locus "ERVLE_14q12l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3003"; repClass "LTR"; repEnd "1756"; repFamily "ERVL"; repLeft "-3911"; repStart "1498"; ### ERVLB4_14q12e ### chr14 rmsk gene 29981007 29982187 . - . gene_id "ERVLB4_14q12e"; transcript_id "ERVLB4_14q12e"; locus "ERVLB4_14q12e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1425"; model_cov "1311"; model_pct "22.9"; chr14 rmsk exon 29981007 29981506 965 - . gene_id "ERVLB4_14q12e"; transcript_id "ERVLB4_14q12e"; locus "ERVLB4_14q12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1425"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "3603"; repStart "-1519"; chr14 rmsk exon 29981519 29981700 394 - . gene_id "ERVLB4_14q12e"; transcript_id "ERVLB4_14q12e"; locus "ERVLB4_14q12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1425"; repClass "LTR"; repEnd "3570"; repFamily "ERVL"; repLeft "3385"; repStart "-2144"; chr14 rmsk exon 29981695 29982187 773 - . gene_id "ERVLB4_14q12e"; transcript_id "ERVLB4_14q12e"; locus "ERVLB4_14q12e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1425"; repClass "LTR"; repEnd "3387"; repFamily "ERVL"; repLeft "2853"; repStart "-2327"; ### HERVL_14q12d ### chr14 rmsk gene 30047978 30052175 . + . gene_id "HERVL_14q12d"; transcript_id "HERVL_14q12d"; locus "HERVL_14q12d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1071"; model_cov "3658"; model_pct "64.7"; chr14 rmsk exon 30047978 30051624 28187 + . gene_id "HERVL_14q12d"; transcript_id "HERVL_14q12d"; locus "HERVL_14q12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1071"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1996"; chr14 rmsk exon 30051625 30052175 2090 + . gene_id "HERVL_14q12d"; transcript_id "HERVL_14q12d"; locus "HERVL_14q12d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1071"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_14q12 ### chr14 rmsk gene 30527153 30530363 . - . gene_id "HERVL18_14q12"; transcript_id "HERVL18_14q12"; locus "HERVL18_14q12"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0128"; model_cov "2800"; model_pct "46.3"; chr14 rmsk exon 30527153 30527483 1905 - . gene_id "HERVL18_14q12"; transcript_id "HERVL18_14q12"; locus "HERVL18_14q12"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0128"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 30527560 30530363 15789 - . gene_id "HERVL18_14q12"; transcript_id "HERVL18_14q12"; locus "HERVL18_14q12"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0128"; repClass "LTR"; repEnd "5941"; repFamily "ERVL"; repLeft "3141"; repStart "-106"; ### HERVIP10FH_14q12 ### chr14 rmsk gene 30965849 30972553 . + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0138"; model_cov "5099"; model_pct "99.9"; chr14 rmsk exon 30965849 30966394 3039 + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0138"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 30966395 30968402 29964 + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0138"; repClass "LTR"; repEnd "2030"; repFamily "ERV1"; repLeft "-3072"; repStart "1"; chr14 rmsk exon 30968694 30969154 29964 + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0138"; repClass "LTR"; repEnd "2483"; repFamily "ERV1"; repLeft "-2619"; repStart "2031"; chr14 rmsk exon 30969449 30972048 29964 + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0138"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "2484"; chr14 rmsk exon 30972049 30972553 2991 + . gene_id "HERVIP10FH_14q12"; transcript_id "HERVIP10FH_14q12"; locus "HERVIP10FH_14q12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0138"; repClass "LTR"; repEnd "496"; repFamily "ERV1"; repLeft "-15"; repStart "1"; ### HERVH_14q12c ### chr14 rmsk gene 31246362 31251138 . - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1012"; model_cov "3911"; model_pct "50.7"; chr14 rmsk exon 31246362 31246830 4191 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 31246831 31247440 4735 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7106"; repStart "0"; chr14 rmsk exon 31247433 31247594 1061 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "3492"; repStart "-4061"; chr14 rmsk exon 31247585 31247734 967 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr14 rmsk exon 31247714 31250669 15850 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr14 rmsk exon 31250670 31251138 4139 - . gene_id "HERVH_14q12c"; transcript_id "HERVH_14q12c"; locus "HERVH_14q12c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1012"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_14q12b ### chr14 rmsk gene 31271566 31280827 . + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0652"; model_cov "4509"; model_pct "68.3"; chr14 rmsk exon 31271566 31272030 3448 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0652"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 31272034 31272506 2373 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-6038"; repStart "1"; chr14 rmsk exon 31272631 31273001 1349 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2105"; chr14 rmsk exon 31274512 31274661 3562 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "2880"; repFamily "ERV1"; repLeft "-3718"; repStart "2730"; chr14 rmsk exon 31274945 31275110 3562 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "3032"; repFamily "ERV1"; repLeft "-3566"; repStart "2881"; chr14 rmsk exon 31275414 31275469 3562 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "3074"; repFamily "ERV1"; repLeft "-3524"; repStart "3033"; chr14 rmsk exon 31275778 31276151 3562 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "3469"; repFamily "ERV1"; repLeft "-3129"; repStart "3075"; chr14 rmsk exon 31276463 31276655 3562 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "3637"; repFamily "ERV1"; repLeft "-2961"; repStart "3470"; chr14 rmsk exon 31277103 31277724 9588 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "4721"; repFamily "ERV1"; repLeft "-1877"; repStart "4002"; chr14 rmsk exon 31278066 31278516 9588 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "5117"; repFamily "ERV1"; repLeft "-1481"; repStart "4722"; chr14 rmsk exon 31278800 31279416 9588 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "5905"; repFamily "ERV1"; repLeft "-693"; repStart "5047"; chr14 rmsk exon 31279710 31280358 4392 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0652"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "5906"; chr14 rmsk exon 31280365 31280827 3155 + . gene_id "MER4_14q12b"; transcript_id "MER4_14q12b"; locus "MER4_14q12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0652"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_14q12a ### chr14 rmsk gene 31776942 31779059 . - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0310"; model_cov "1822"; model_pct "27.4"; chr14 rmsk exon 31776942 31777242 1421 - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0310"; repClass "LTR"; repEnd "368"; repFamily "ERV1"; repLeft "24"; repStart "-106"; chr14 rmsk exon 31777263 31778311 6714 - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0310"; repClass "LTR"; repEnd "6582"; repFamily "ERV1"; repLeft "5518"; repStart "-57"; chr14 rmsk exon 31778359 31778846 3147 - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0310"; repClass "LTR"; repEnd "5423"; repFamily "ERV1"; repLeft "4903"; repStart "-1216"; chr14 rmsk exon 31778841 31778991 349 - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0310"; repClass "LTR"; repEnd "3501"; repFamily "ERV1"; repLeft "3351"; repStart "-3138"; chr14 rmsk exon 31778978 31779059 318 - . gene_id "MER101_14q12a"; transcript_id "MER101_14q12a"; locus "MER101_14q12a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0310"; repClass "LTR"; repEnd "3162"; repFamily "ERV1"; repLeft "3074"; repStart "-3477"; ### MER101_14q12b ### chr14 rmsk gene 31779369 31782971 . - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0311"; model_cov "3300"; model_pct "49.7"; chr14 rmsk exon 31779369 31780063 8909 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "4891"; repFamily "ERV1"; repLeft "3854"; repStart "-1748"; chr14 rmsk exon 31780368 31781283 8909 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "4217"; repFamily "ERV1"; repLeft "3302"; repStart "-2422"; chr14 rmsk exon 31781302 31781466 647 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "3039"; repFamily "ERV1"; repLeft "2891"; repStart "-3600"; chr14 rmsk exon 31781465 31782114 2348 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "2743"; repFamily "ERV1"; repLeft "1721"; repStart "-3896"; chr14 rmsk exon 31782406 31782509 1349 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "239"; repFamily "ERV1"; repLeft "157"; repStart "-6400"; chr14 rmsk exon 31782813 31782971 1349 - . gene_id "MER101_14q12b"; transcript_id "MER101_14q12b"; locus "MER101_14q12b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0311"; repClass "LTR"; repEnd "156"; repFamily "ERV1"; repLeft "60"; repStart "-6483"; ### ERVLB4_14q12f ### chr14 rmsk gene 31971467 31977486 . - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1426"; model_cov "3412"; model_pct "59.7"; chr14 rmsk exon 31971467 31971514 244 - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1426"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "346"; repStart "-1"; chr14 rmsk exon 31971611 31971969 1562 - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1426"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "3"; repStart "-48"; chr14 rmsk exon 31971970 31972559 5954 - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1426"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5107"; repStart "0"; chr14 rmsk exon 31972914 31973499 5954 - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1426"; repClass "LTR"; repEnd "5106"; repFamily "ERVL"; repLeft "4511"; repStart "-608"; chr14 rmsk exon 31975308 31977486 13808 - . gene_id "ERVLB4_14q12f"; transcript_id "ERVLB4_14q12f"; locus "ERVLB4_14q12f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1426"; repClass "LTR"; repEnd "4514"; repFamily "ERVL"; repLeft "2304"; repStart "-1200"; ### ERVLE_14q12m ### chr14 rmsk gene 32015078 32015912 . + . gene_id "ERVLE_14q12m"; transcript_id "ERVLE_14q12m"; locus "ERVLE_14q12m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3005"; model_cov "850"; model_pct "15.0"; chr14 rmsk exon 32015078 32015912 1656 + . gene_id "ERVLE_14q12m"; transcript_id "ERVLE_14q12m"; locus "ERVLE_14q12m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3005"; repClass "LTR"; repEnd "4695"; repFamily "ERVL"; repLeft "-972"; repStart "3845"; ### ERV316A3_14q12h ### chr14 rmsk gene 32163942 32167734 . + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; category "tandem*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2271"; model_cov "1075"; model_pct "20.6"; chr14 rmsk exon 32163942 32164015 338 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "2847"; repFamily "ERVL"; repLeft "-2379"; repStart "2775"; chr14 rmsk exon 32164030 32164109 463 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "3263"; repFamily "ERVL"; repLeft "-1963"; repStart "3183"; chr14 rmsk exon 32165089 32165970 3635 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "4371"; repFamily "ERVL"; repLeft "-855"; repStart "3501"; chr14 rmsk exon 32165971 32166103 578 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "349"; chr14 rmsk exon 32166114 32166380 566 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "3353"; repFamily "ERVL"; repLeft "-1873"; repStart "3090"; chr14 rmsk exon 32166382 32166877 1807 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "4177"; repFamily "ERVL"; repLeft "-1049"; repStart "3688"; chr14 rmsk exon 32166949 32167253 1296 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "4870"; repFamily "ERVL"; repLeft "-356"; repStart "4547"; chr14 rmsk exon 32167592 32167734 606 + . gene_id "ERV316A3_14q12h"; transcript_id "ERV316A3_14q12h"; locus "ERV316A3_14q12h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2271"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "-105"; repStart "202"; ### HERVFRD_14q12 ### chr14 rmsk gene 32240756 32250648 . - . gene_id "HERVFRD_14q12"; transcript_id "HERVFRD_14q12"; locus "HERVFRD_14q12"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0146"; model_cov "7165"; model_pct "99.4"; chr14 rmsk exon 32240756 32241269 3060 - . gene_id "HERVFRD_14q12"; transcript_id "HERVFRD_14q12"; locus "HERVFRD_14q12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0146"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-236"; chr14 rmsk exon 32241270 32242397 7347 - . gene_id "HERVFRD_14q12"; transcript_id "HERVFRD_14q12"; locus "HERVFRD_14q12"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0146"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6093"; repStart "-8"; chr14 rmsk exon 32243249 32249982 20554 - . gene_id "HERVFRD_14q12"; transcript_id "HERVFRD_14q12"; locus "HERVFRD_14q12"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0146"; repClass "LTR"; repEnd "6740"; repFamily "ERV1"; repLeft "679"; repStart "-465"; chr14 rmsk exon 32249986 32250648 3863 - . gene_id "HERVFRD_14q12"; transcript_id "HERVFRD_14q12"; locus "HERVFRD_14q12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0146"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "-12"; ### ERV316A3_14q13.1a ### chr14 rmsk gene 32917581 32920199 . + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2272"; model_cov "1855"; model_pct "35.5"; chr14 rmsk exon 32917581 32917984 948 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "417"; repFamily "ERVL"; repLeft "-5"; repStart "6"; chr14 rmsk exon 32917986 32918186 420 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "-4759"; repStart "265"; chr14 rmsk exon 32918224 32918950 1313 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "1019"; repFamily "ERVL"; repLeft "-4207"; repStart "218"; chr14 rmsk exon 32918939 32919649 953 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "3106"; repFamily "ERVL"; repLeft "-2120"; repStart "2344"; chr14 rmsk exon 32919755 32919839 250 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "5134"; chr14 rmsk exon 32919842 32920199 692 + . gene_id "ERV316A3_14q13.1a"; transcript_id "ERV316A3_14q13.1a"; locus "ERV316A3_14q13.1a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2272"; repClass "LTR"; repEnd "321"; repFamily "ERVL"; repLeft "-101"; repStart "-57"; ### MER41_14q13.1 ### chr14 rmsk gene 33868119 33874435 . + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0430"; model_cov "6352"; model_pct "100.0"; chr14 rmsk exon 33868119 33868269 1092 + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0430"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "400"; chr14 rmsk exon 33868357 33869165 5058 + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0430"; repClass "LTR"; repEnd "851"; repFamily "ERV1"; repLeft "-5095"; repStart "3"; chr14 rmsk exon 33869164 33870027 13116 + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0430"; repClass "LTR"; repEnd "1721"; repFamily "ERV1"; repLeft "-4225"; repStart "730"; chr14 rmsk exon 33870340 33873986 13324 + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0430"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1431"; chr14 rmsk exon 33873987 33874435 3433 + . gene_id "MER41_14q13.1"; transcript_id "MER41_14q13.1"; locus "MER41_14q13.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0430"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### ERV316A3_14q13.1b ### chr14 rmsk gene 33880548 33887380 . + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2273"; model_cov "2982"; model_pct "57.1"; chr14 rmsk exon 33880548 33881606 1796 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "1408"; repFamily "ERVL"; repLeft "-3818"; repStart "331"; chr14 rmsk exon 33883518 33883623 1341 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "2150"; repFamily "ERVL"; repLeft "-3076"; repStart "2047"; chr14 rmsk exon 33883918 33884303 1341 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "2535"; repFamily "ERVL"; repLeft "-2691"; repStart "2151"; chr14 rmsk exon 33885004 33886208 2669 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "3442"; repFamily "ERVL"; repLeft "-1784"; repStart "2199"; chr14 rmsk exon 33886885 33887059 697 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "-94"; repStart "4957"; chr14 rmsk exon 33887154 33887380 1000 + . gene_id "ERV316A3_14q13.1b"; transcript_id "ERV316A3_14q13.1b"; locus "ERV316A3_14q13.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2273"; repClass "LTR"; repEnd "234"; repFamily "ERVL"; repLeft "-222"; repStart "1"; ### ERVLE_14q13.1a ### chr14 rmsk gene 33907548 33908371 . - . gene_id "ERVLE_14q13.1a"; transcript_id "ERVLE_14q13.1a"; locus "ERVLE_14q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3006"; model_cov "838"; model_pct "14.8"; chr14 rmsk exon 33907548 33908371 1884 - . gene_id "ERVLE_14q13.1a"; transcript_id "ERVLE_14q13.1a"; locus "ERVLE_14q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3006"; repClass "LTR"; repEnd "942"; repFamily "ERVL"; repLeft "104"; repStart "-4725"; ### ERVLE_14q13.1b ### chr14 rmsk gene 34316183 34320295 . - . gene_id "ERVLE_14q13.1b"; transcript_id "ERVLE_14q13.1b"; locus "ERVLE_14q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3007"; model_cov "3279"; model_pct "57.9"; chr14 rmsk exon 34316183 34316935 2545 - . gene_id "ERVLE_14q13.1b"; transcript_id "ERVLE_14q13.1b"; locus "ERVLE_14q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3007"; repClass "LTR"; repEnd "5188"; repFamily "ERVL"; repLeft "4237"; repStart "-479"; chr14 rmsk exon 34317555 34318055 2545 - . gene_id "ERVLE_14q13.1b"; transcript_id "ERVLE_14q13.1b"; locus "ERVLE_14q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3007"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "4168"; repStart "-990"; chr14 rmsk exon 34318184 34319220 3414 - . gene_id "ERVLE_14q13.1b"; transcript_id "ERVLE_14q13.1b"; locus "ERVLE_14q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3007"; repClass "LTR"; repEnd "2565"; repFamily "ERVL"; repLeft "1515"; repStart "-3102"; chr14 rmsk exon 34319598 34320295 844 - . gene_id "ERVLE_14q13.1b"; transcript_id "ERVLE_14q13.1b"; locus "ERVLE_14q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3007"; repClass "LTR"; repEnd "1829"; repFamily "ERVL"; repLeft "1060"; repStart "-3838"; ### MER4B_14q13.1 ### chr14 rmsk gene 34351510 34353114 . - . gene_id "MER4B_14q13.1"; transcript_id "MER4B_14q13.1"; locus "MER4B_14q13.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0360"; model_cov "1329"; model_pct "19.7"; chr14 rmsk exon 34351510 34352930 6185 - . gene_id "MER4B_14q13.1"; transcript_id "MER4B_14q13.1"; locus "MER4B_14q13.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0360"; repClass "LTR"; repEnd "1434"; repFamily "ERV1"; repLeft "238"; repStart "-5324"; chr14 rmsk exon 34352973 34353114 720 - . gene_id "MER4B_14q13.1"; transcript_id "MER4B_14q13.1"; locus "MER4B_14q13.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0360"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "152"; repStart "-6473"; ### HERVL40_14q13.1a ### chr14 rmsk gene 34423073 34426443 . - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0370"; model_cov "1319"; model_pct "23.9"; chr14 rmsk exon 34423073 34423400 1509 - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0370"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "1"; repStart "-178"; chr14 rmsk exon 34423435 34423740 1152 - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0370"; repClass "LTR"; repEnd "5502"; repFamily "ERVL"; repLeft "5242"; repStart "-28"; chr14 rmsk exon 34424457 34424702 738 - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0370"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4950"; repStart "-324"; chr14 rmsk exon 34424881 34425400 1644 - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0370"; repClass "LTR"; repEnd "4650"; repFamily "ERVL"; repLeft "4241"; repStart "-880"; chr14 rmsk exon 34426059 34426443 3472 - . gene_id "HERVL40_14q13.1a"; transcript_id "HERVL40_14q13.1a"; locus "HERVL40_14q13.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0370"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "3710"; repStart "-1426"; ### HERVL40_14q13.1b ### chr14 rmsk gene 34426528 34430079 . - . gene_id "HERVL40_14q13.1b"; transcript_id "HERVL40_14q13.1b"; locus "HERVL40_14q13.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0371"; model_cov "1140"; model_pct "20.6"; chr14 rmsk exon 34426528 34427171 3472 - . gene_id "HERVL40_14q13.1b"; transcript_id "HERVL40_14q13.1b"; locus "HERVL40_14q13.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0371"; repClass "LTR"; repEnd "4104"; repFamily "ERVL"; repLeft "3442"; repStart "-1426"; chr14 rmsk exon 34428404 34428740 901 - . gene_id "HERVL40_14q13.1b"; transcript_id "HERVL40_14q13.1b"; locus "HERVL40_14q13.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0371"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "1246"; repStart "-3941"; chr14 rmsk exon 34429041 34429168 901 - . gene_id "HERVL40_14q13.1b"; transcript_id "HERVL40_14q13.1b"; locus "HERVL40_14q13.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0371"; repClass "LTR"; repEnd "1245"; repFamily "ERVL"; repLeft "1110"; repStart "-4285"; chr14 rmsk exon 34429628 34430079 1766 - . gene_id "HERVL40_14q13.1b"; transcript_id "HERVL40_14q13.1b"; locus "HERVL40_14q13.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0371"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "8"; repStart "0"; ### HERVH_14q13.1 ### chr14 rmsk gene 34651542 34655200 . + . gene_id "HERVH_14q13.1"; transcript_id "HERVH_14q13.1"; locus "HERVH_14q13.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1013"; model_cov "2747"; model_pct "35.6"; chr14 rmsk exon 34651542 34651687 16894 + . gene_id "HERVH_14q13.1"; transcript_id "HERVH_14q13.1"; locus "HERVH_14q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1013"; repClass "LTR"; repEnd "5109"; repFamily "ERV1"; repLeft "-2604"; repStart "4964"; chr14 rmsk exon 34651989 34654107 16894 + . gene_id "HERVH_14q13.1"; transcript_id "HERVH_14q13.1"; locus "HERVH_14q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1013"; repClass "LTR"; repEnd "7210"; repFamily "ERV1"; repLeft "-503"; repStart "5110"; chr14 rmsk exon 34654261 34654769 16894 + . gene_id "HERVH_14q13.1"; transcript_id "HERVH_14q13.1"; locus "HERVH_14q13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1013"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7211"; chr14 rmsk exon 34654770 34655200 3388 + . gene_id "HERVH_14q13.1"; transcript_id "HERVH_14q13.1"; locus "HERVH_14q13.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1013"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_14q13.2 ### chr14 rmsk gene 35900846 35902282 . - . gene_id "ERVLE_14q13.2"; transcript_id "ERVLE_14q13.2"; locus "ERVLE_14q13.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3008"; model_cov "1133"; model_pct "20.0"; chr14 rmsk exon 35900846 35901680 2791 - . gene_id "ERVLE_14q13.2"; transcript_id "ERVLE_14q13.2"; locus "ERVLE_14q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3008"; repClass "LTR"; repEnd "3328"; repFamily "ERVL"; repLeft "2482"; repStart "-2339"; chr14 rmsk exon 35901992 35902282 2791 - . gene_id "ERVLE_14q13.2"; transcript_id "ERVLE_14q13.2"; locus "ERVLE_14q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3008"; repClass "LTR"; repEnd "2481"; repFamily "ERVL"; repLeft "2194"; repStart "-3186"; ### LTR57_14q13.2a ### chr14 rmsk gene 35912739 35914096 . + . gene_id "LTR57_14q13.2a"; transcript_id "LTR57_14q13.2a"; locus "LTR57_14q13.2a"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0141"; model_cov "598"; model_pct "11.2"; chr14 rmsk exon 35912739 35913038 3942 + . gene_id "LTR57_14q13.2a"; transcript_id "LTR57_14q13.2a"; locus "LTR57_14q13.2a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0141"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "-299"; repStart "4744"; chr14 rmsk exon 35913395 35913696 3942 + . gene_id "LTR57_14q13.2a"; transcript_id "LTR57_14q13.2a"; locus "LTR57_14q13.2a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0141"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "5045"; chr14 rmsk exon 35913698 35914096 2648 + . gene_id "LTR57_14q13.2a"; transcript_id "LTR57_14q13.2a"; locus "LTR57_14q13.2a"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0141"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### LTR57_14q13.2b ### chr14 rmsk gene 35923129 35928372 . - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0142"; model_cov "3419"; model_pct "64.0"; chr14 rmsk exon 35923129 35923737 4897 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "4142"; repStart "-589"; chr14 rmsk exon 35924046 35924210 4897 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "4141"; repFamily "ERVL"; repLeft "3982"; repStart "-1202"; chr14 rmsk exon 35924210 35924803 13198 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "3161"; repFamily "ERVL"; repLeft "2565"; repStart "-2182"; chr14 rmsk exon 35925086 35925380 13198 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "2564"; repFamily "ERVL"; repLeft "2282"; repStart "-2779"; chr14 rmsk exon 35925756 35926445 13198 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "2281"; repFamily "ERVL"; repLeft "1225"; repStart "-3062"; chr14 rmsk exon 35927113 35927221 13198 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "1133"; repStart "-4119"; chr14 rmsk exon 35927358 35927970 3831 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "624"; repFamily "ERVL"; repLeft "1"; repStart "-4719"; chr14 rmsk exon 35927972 35928372 2832 - . gene_id "LTR57_14q13.2b"; transcript_id "LTR57_14q13.2b"; locus "LTR57_14q13.2b"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0142"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "1"; repStart "-1"; ### HERVL18_14q13.2 ### chr14 rmsk gene 36012639 36015740 . - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0129"; model_cov "1844"; model_pct "30.5"; chr14 rmsk exon 36012639 36013206 3598 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr14 rmsk exon 36013295 36013818 3045 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "2952"; repStart "-2556"; chr14 rmsk exon 36013867 36014109 1274 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "2720"; repStart "-3086"; chr14 rmsk exon 36014109 36014268 563 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2230"; repStart "-3595"; chr14 rmsk exon 36014327 36014687 1085 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1383"; repStart "-4237"; chr14 rmsk exon 36014738 36014873 676 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "492"; repStart "-5418"; chr14 rmsk exon 36014868 36015146 1429 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "19"; repStart "-5750"; chr14 rmsk exon 36015168 36015740 3536 - . gene_id "HERVL18_14q13.2"; transcript_id "HERVL18_14q13.2"; locus "HERVL18_14q13.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0129"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_14q13.3 ### chr14 rmsk gene 36375902 36379643 . - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2275"; model_cov "2316"; model_pct "44.3"; chr14 rmsk exon 36375902 36376307 1291 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "20"; repStart "-3"; chr14 rmsk exon 36376837 36376851 1291 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "19"; repFamily "ERVL"; repLeft "5"; repStart "-419"; chr14 rmsk exon 36376856 36377247 1175 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4850"; repStart "0"; chr14 rmsk exon 36377321 36377445 3145 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "2078"; repFamily "ERVL"; repLeft "1976"; repStart "-3148"; chr14 rmsk exon 36377747 36379121 3145 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "592"; repStart "-3251"; chr14 rmsk exon 36379191 36379643 1155 - . gene_id "ERV316A3_14q13.3"; transcript_id "ERV316A3_14q13.3"; locus "ERV316A3_14q13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2275"; repClass "LTR"; repEnd "748"; repFamily "ERVL"; repLeft "293"; repStart "-4478"; ### ERVLB4_14q13.3 ### chr14 rmsk gene 37325724 37326860 . - . gene_id "ERVLB4_14q13.3"; transcript_id "ERVLB4_14q13.3"; locus "ERVLB4_14q13.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1429"; model_cov "1145"; model_pct "20.0"; chr14 rmsk exon 37325724 37326860 5883 - . gene_id "ERVLB4_14q13.3"; transcript_id "ERVLB4_14q13.3"; locus "ERVLB4_14q13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1429"; repClass "LTR"; repEnd "5112"; repFamily "ERVL"; repLeft "3967"; repStart "-602"; ### ERVLB4_14q21.1a ### chr14 rmsk gene 37745097 37747223 . - . gene_id "ERVLB4_14q21.1a"; transcript_id "ERVLB4_14q21.1a"; locus "ERVLB4_14q21.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1430"; model_cov "1382"; model_pct "24.2"; chr14 rmsk exon 37745097 37746289 2191 - . gene_id "ERVLB4_14q21.1a"; transcript_id "ERVLB4_14q21.1a"; locus "ERVLB4_14q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1430"; repClass "LTR"; repEnd "2601"; repFamily "ERVL"; repLeft "1344"; repStart "-3113"; chr14 rmsk exon 37747098 37747223 260 - . gene_id "ERVLB4_14q21.1a"; transcript_id "ERVLB4_14q21.1a"; locus "ERVLB4_14q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1430"; repClass "LTR"; repEnd "276"; repFamily "ERVL"; repLeft "151"; repStart "-5438"; ### HERVW_14q21.1 ### chr14 rmsk gene 38104231 38107296 . + . gene_id "HERVW_14q21.1"; transcript_id "HERVW_14q21.1"; locus "HERVW_14q21.1"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0252"; model_cov "2942"; model_pct "34.1"; chr14 rmsk exon 38104231 38104978 2027 + . gene_id "HERVW_14q21.1"; transcript_id "HERVW_14q21.1"; locus "HERVW_14q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0252"; repClass "LTR"; repEnd "1161"; repFamily "ERV1"; repLeft "-7465"; repStart "386"; chr14 rmsk exon 38105142 38106100 5613 + . gene_id "HERVW_14q21.1"; transcript_id "HERVW_14q21.1"; locus "HERVW_14q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0252"; repClass "LTR"; repEnd "3965"; repFamily "ERV1"; repLeft "-4661"; repStart "3006"; chr14 rmsk exon 38106102 38107296 4929 + . gene_id "HERVW_14q21.1"; transcript_id "HERVW_14q21.1"; locus "HERVW_14q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0252"; repClass "LTR"; repEnd "8625"; repFamily "ERV1"; repLeft "-1"; repStart "7417"; ### HERVH_14q21.1a ### chr14 rmsk gene 38190638 38196525 . + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1014"; model_cov "5059"; model_pct "65.6"; chr14 rmsk exon 38190638 38191083 3548 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 38191086 38194338 19525 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr14 rmsk exon 38194329 38194820 3065 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr14 rmsk exon 38194823 38195481 4122 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 38195483 38195699 1297 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 38195700 38196078 2296 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr14 rmsk exon 38196079 38196525 3612 + . gene_id "HERVH_14q21.1a"; transcript_id "HERVH_14q21.1a"; locus "HERVH_14q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1014"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### ERV316A3_14q21.1a ### chr14 rmsk gene 38522075 38522687 . + . gene_id "ERV316A3_14q21.1a"; transcript_id "ERV316A3_14q21.1a"; locus "ERV316A3_14q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2276"; model_cov "620"; model_pct "11.9"; chr14 rmsk exon 38522075 38522687 946 + . gene_id "ERV316A3_14q21.1a"; transcript_id "ERV316A3_14q21.1a"; locus "ERV316A3_14q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2276"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "-2737"; repStart "1869"; ### MER4_14q21.1a ### chr14 rmsk gene 39376617 39382803 . - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0653"; model_cov "5591"; model_pct "84.7"; chr14 rmsk exon 39376617 39377037 2645 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0653"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 39377048 39379569 7938 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0653"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3287"; repStart "-2"; chr14 rmsk exon 39379858 39380315 7938 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0653"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3452"; repStart "-2606"; chr14 rmsk exon 39380310 39380412 4584 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0653"; repClass "LTR"; repEnd "1902"; repFamily "ERV1"; repLeft "1795"; repStart "-4696"; chr14 rmsk exon 39380715 39382173 4584 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0653"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "316"; repStart "-4804"; chr14 rmsk exon 39382248 39382373 592 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0653"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "3"; repStart "-6438"; chr14 rmsk exon 39382379 39382803 2760 - . gene_id "MER4_14q21.1a"; transcript_id "MER4_14q21.1a"; locus "MER4_14q21.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0653"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_14q21.1b ### chr14 rmsk gene 39483890 39486026 . - . gene_id "ERV316A3_14q21.1b"; transcript_id "ERV316A3_14q21.1b"; locus "ERV316A3_14q21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2277"; model_cov "1491"; model_pct "28.5"; chr14 rmsk exon 39483890 39484265 1211 - . gene_id "ERV316A3_14q21.1b"; transcript_id "ERV316A3_14q21.1b"; locus "ERV316A3_14q21.1b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2277"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "2"; repStart "-38"; chr14 rmsk exon 39484306 39485200 2046 - . gene_id "ERV316A3_14q21.1b"; transcript_id "ERV316A3_14q21.1b"; locus "ERV316A3_14q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2277"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4288"; repStart "-50"; chr14 rmsk exon 39485429 39486026 2074 - . gene_id "ERV316A3_14q21.1b"; transcript_id "ERV316A3_14q21.1b"; locus "ERV316A3_14q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2277"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3726"; repStart "-897"; ### MER4B_14q21.1a ### chr14 rmsk gene 39487218 39488257 . - . gene_id "MER4B_14q21.1a"; transcript_id "MER4B_14q21.1a"; locus "MER4B_14q21.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0361"; model_cov "1005"; model_pct "14.9"; chr14 rmsk exon 39487218 39488257 4302 - . gene_id "MER4B_14q21.1a"; transcript_id "MER4B_14q21.1a"; locus "MER4B_14q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0361"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5753"; repStart "0"; ### HERVFH19_14q21.1 ### chr14 rmsk gene 39733123 39733889 . + . gene_id "HERVFH19_14q21.1"; transcript_id "HERVFH19_14q21.1"; locus "HERVFH19_14q21.1"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0038"; model_cov "774"; model_pct "10.0"; chr14 rmsk exon 39733123 39733889 1856 + . gene_id "HERVFH19_14q21.1"; transcript_id "HERVFH19_14q21.1"; locus "HERVFH19_14q21.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0038"; repClass "LTR"; repEnd "3334"; repFamily "ERV1"; repLeft "-4385"; repStart "2560"; ### ERV316A3_14q21.1c ### chr14 rmsk gene 39786908 39789175 . - . gene_id "ERV316A3_14q21.1c"; transcript_id "ERV316A3_14q21.1c"; locus "ERV316A3_14q21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2279"; model_cov "1486"; model_pct "28.4"; chr14 rmsk exon 39786908 39787336 1359 - . gene_id "ERV316A3_14q21.1c"; transcript_id "ERV316A3_14q21.1c"; locus "ERV316A3_14q21.1c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2279"; repClass "LTR"; repEnd "432"; repFamily "ERVL"; repLeft "1"; repStart "-6"; chr14 rmsk exon 39787921 39788190 851 - . gene_id "ERV316A3_14q21.1c"; transcript_id "ERV316A3_14q21.1c"; locus "ERV316A3_14q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2279"; repClass "LTR"; repEnd "4922"; repFamily "ERVL"; repLeft "4645"; repStart "-304"; chr14 rmsk exon 39788244 39789175 1947 - . gene_id "ERV316A3_14q21.1c"; transcript_id "ERV316A3_14q21.1c"; locus "ERV316A3_14q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2279"; repClass "LTR"; repEnd "2773"; repFamily "ERVL"; repLeft "1564"; repStart "-2453"; ### HERVL_14q21.1a ### chr14 rmsk gene 39893202 39899723 . + . gene_id "HERVL_14q21.1a"; transcript_id "HERVL_14q21.1a"; locus "HERVL_14q21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1073"; model_cov "5653"; model_pct "100.0"; chr14 rmsk exon 39893202 39893669 2710 + . gene_id "HERVL_14q21.1a"; transcript_id "HERVL_14q21.1a"; locus "HERVL_14q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1073"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "2"; chr14 rmsk exon 39893672 39899252 43622 + . gene_id "HERVL_14q21.1a"; transcript_id "HERVL_14q21.1a"; locus "HERVL_14q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1073"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 39899253 39899635 2891 + . gene_id "HERVL_14q21.1a"; transcript_id "HERVL_14q21.1a"; locus "HERVL_14q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1073"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-47"; repStart "1"; chr14 rmsk exon 39899682 39899723 2891 + . gene_id "HERVL_14q21.1a"; transcript_id "HERVL_14q21.1a"; locus "HERVL_14q21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1073"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-5"; repStart "398"; ### HERVL_14q21.1b ### chr14 rmsk gene 40006859 40012031 . + . gene_id "HERVL_14q21.1b"; transcript_id "HERVL_14q21.1b"; locus "HERVL_14q21.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1074"; model_cov "4482"; model_pct "79.3"; chr14 rmsk exon 40006859 40007073 1440 + . gene_id "HERVL_14q21.1b"; transcript_id "HERVL_14q21.1b"; locus "HERVL_14q21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1074"; repClass "LTR"; repEnd "219"; repFamily "ERVL"; repLeft "-234"; repStart "1"; chr14 rmsk exon 40007075 40007207 897 + . gene_id "HERVL_14q21.1b"; transcript_id "HERVL_14q21.1b"; locus "HERVL_14q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1074"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-5277"; repStart "245"; chr14 rmsk exon 40007197 40011408 32000 + . gene_id "HERVL_14q21.1b"; transcript_id "HERVL_14q21.1b"; locus "HERVL_14q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1074"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1304"; chr14 rmsk exon 40011516 40012031 2705 + . gene_id "HERVL_14q21.1b"; transcript_id "HERVL_14q21.1b"; locus "HERVL_14q21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1074"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_14q21.1a ### chr14 rmsk gene 40392480 40394759 . + . gene_id "ERVLE_14q21.1a"; transcript_id "ERVLE_14q21.1a"; locus "ERVLE_14q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3011"; model_cov "1213"; model_pct "21.4"; chr14 rmsk exon 40392480 40393106 1490 + . gene_id "ERVLE_14q21.1a"; transcript_id "ERVLE_14q21.1a"; locus "ERVLE_14q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3011"; repClass "LTR"; repEnd "2734"; repFamily "ERVL"; repLeft "-2933"; repStart "2095"; chr14 rmsk exon 40393260 40393532 533 + . gene_id "ERVLE_14q21.1a"; transcript_id "ERVLE_14q21.1a"; locus "ERVLE_14q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3011"; repClass "LTR"; repEnd "3247"; repFamily "ERVL"; repLeft "-2420"; repStart "2960"; chr14 rmsk exon 40393641 40393828 363 + . gene_id "ERVLE_14q21.1a"; transcript_id "ERVLE_14q21.1a"; locus "ERVLE_14q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3011"; repClass "LTR"; repEnd "3694"; repFamily "ERVL"; repLeft "-1973"; repStart "3495"; chr14 rmsk exon 40394670 40394759 259 + . gene_id "ERVLE_14q21.1a"; transcript_id "ERVLE_14q21.1a"; locus "ERVLE_14q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3011"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "-1776"; repStart "3803"; ### ERVLB4_14q21.1b ### chr14 rmsk gene 40440101 40441948 . - . gene_id "ERVLB4_14q21.1b"; transcript_id "ERVLB4_14q21.1b"; locus "ERVLB4_14q21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1433"; model_cov "1494"; model_pct "26.1"; chr14 rmsk exon 40440101 40440854 3525 - . gene_id "ERVLB4_14q21.1b"; transcript_id "ERVLB4_14q21.1b"; locus "ERVLB4_14q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1433"; repClass "LTR"; repEnd "5614"; repFamily "ERVL"; repLeft "4812"; repStart "-100"; chr14 rmsk exon 40441248 40441948 3859 - . gene_id "ERVLB4_14q21.1b"; transcript_id "ERVLB4_14q21.1b"; locus "ERVLB4_14q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1433"; repClass "LTR"; repEnd "4815"; repFamily "ERVL"; repLeft "4123"; repStart "-899"; ### LTR25_14q21.1 ### chr14 rmsk gene 40464410 40470231 . + . gene_id "LTR25_14q21.1"; transcript_id "LTR25_14q21.1"; locus "LTR25_14q21.1"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0100"; model_cov "7019"; model_pct "97.6"; chr14 rmsk exon 40464410 40464525 322 + . gene_id "LTR25_14q21.1"; transcript_id "LTR25_14q21.1"; locus "LTR25_14q21.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0100"; repClass "LTR"; repEnd "2137"; repFamily "ERV1"; repLeft "-5051"; repStart "2022"; chr14 rmsk exon 40465201 40465392 738 + . gene_id "LTR25_14q21.1"; transcript_id "LTR25_14q21.1"; locus "LTR25_14q21.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0100"; repClass "LTR"; repEnd "2425"; repFamily "ERV1"; repLeft "-4763"; repStart "2243"; chr14 rmsk exon 40465471 40465729 802 + . gene_id "LTR25_14q21.1"; transcript_id "LTR25_14q21.1"; locus "LTR25_14q21.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0100"; repClass "LTR"; repEnd "6106"; repFamily "ERV1"; repLeft "-1082"; repStart "5962"; chr14 rmsk exon 40465720 40470231 13909 + . gene_id "LTR25_14q21.1"; transcript_id "LTR25_14q21.1"; locus "LTR25_14q21.1"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0100"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "609"; ### HUERSP3_14q21.1 ### chr14 rmsk gene 40474268 40477616 . - . gene_id "HUERSP3_14q21.1"; transcript_id "HUERSP3_14q21.1"; locus "HUERSP3_14q21.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0167"; model_cov "2210"; model_pct "24.8"; chr14 rmsk exon 40474268 40474461 1192 - . gene_id "HUERSP3_14q21.1"; transcript_id "HUERSP3_14q21.1"; locus "HUERSP3_14q21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0167"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "414"; repStart "0"; chr14 rmsk exon 40474462 40474762 2070 - . gene_id "HUERSP3_14q21.1"; transcript_id "HUERSP3_14q21.1"; locus "HUERSP3_14q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0167"; repClass "LTR"; repEnd "4452"; repFamily "ERV1"; repLeft "4152"; repStart "-4467"; chr14 rmsk exon 40475038 40477001 9510 - . gene_id "HUERSP3_14q21.1"; transcript_id "HUERSP3_14q21.1"; locus "HUERSP3_14q21.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0167"; repClass "LTR"; repEnd "3414"; repFamily "ERV1"; repLeft "1504"; repStart "-5505"; chr14 rmsk exon 40477004 40477616 4439 - . gene_id "HUERSP3_14q21.1"; transcript_id "HUERSP3_14q21.1"; locus "HUERSP3_14q21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0167"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_14q21.1b ### chr14 rmsk gene 40567726 40569115 . - . gene_id "ERVLE_14q21.1b"; transcript_id "ERVLE_14q21.1b"; locus "ERVLE_14q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3012"; model_cov "1104"; model_pct "19.5"; chr14 rmsk exon 40567726 40567931 488 - . gene_id "ERVLE_14q21.1b"; transcript_id "ERVLE_14q21.1b"; locus "ERVLE_14q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3012"; repClass "LTR"; repEnd "4628"; repFamily "ERVL"; repLeft "4424"; repStart "-1039"; chr14 rmsk exon 40567975 40568377 986 - . gene_id "ERVLE_14q21.1b"; transcript_id "ERVLE_14q21.1b"; locus "ERVLE_14q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3012"; repClass "LTR"; repEnd "4374"; repFamily "ERVL"; repLeft "3988"; repStart "-1293"; chr14 rmsk exon 40568431 40569115 974 - . gene_id "ERVLE_14q21.1b"; transcript_id "ERVLE_14q21.1b"; locus "ERVLE_14q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3012"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "3217"; repStart "-1936"; ### ERVLE_14q21.1c ### chr14 rmsk gene 40574808 40577506 . + . gene_id "ERVLE_14q21.1c"; transcript_id "ERVLE_14q21.1c"; locus "ERVLE_14q21.1c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3013"; model_cov "1866"; model_pct "32.9"; chr14 rmsk exon 40574808 40575184 1020 + . gene_id "ERVLE_14q21.1c"; transcript_id "ERVLE_14q21.1c"; locus "ERVLE_14q21.1c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3013"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "281"; chr14 rmsk exon 40575265 40576602 2445 + . gene_id "ERVLE_14q21.1c"; transcript_id "ERVLE_14q21.1c"; locus "ERVLE_14q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3013"; repClass "LTR"; repEnd "1494"; repFamily "ERVL"; repLeft "-4173"; repStart "-22"; chr14 rmsk exon 40577157 40577506 2445 + . gene_id "ERVLE_14q21.1c"; transcript_id "ERVLE_14q21.1c"; locus "ERVLE_14q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3013"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "-3827"; repStart "1490"; ### ERVLE_14q21.1d ### chr14 rmsk gene 40656340 40657521 . - . gene_id "ERVLE_14q21.1d"; transcript_id "ERVLE_14q21.1d"; locus "ERVLE_14q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3015"; model_cov "1227"; model_pct "21.7"; chr14 rmsk exon 40656340 40657521 3601 - . gene_id "ERVLE_14q21.1d"; transcript_id "ERVLE_14q21.1d"; locus "ERVLE_14q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3015"; repClass "LTR"; repEnd "4214"; repFamily "ERVL"; repLeft "2987"; repStart "-1453"; ### HUERSP2_14q21.1 ### chr14 rmsk gene 40723588 40725294 . - . gene_id "HUERSP2_14q21.1"; transcript_id "HUERSP2_14q21.1"; locus "HUERSP2_14q21.1"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0109"; model_cov "1305"; model_pct "42.3"; chr14 rmsk exon 40723588 40724824 7277 - . gene_id "HUERSP2_14q21.1"; transcript_id "HUERSP2_14q21.1"; locus "HUERSP2_14q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0109"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1868"; repStart "0"; chr14 rmsk exon 40724827 40724910 381 - . gene_id "HUERSP2_14q21.1"; transcript_id "HUERSP2_14q21.1"; locus "HUERSP2_14q21.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0109"; repClass "LTR"; repEnd "-3031"; repFamily "ERV1"; repLeft "-3116"; repStart "-6119"; chr14 rmsk exon 40725236 40725294 346 - . gene_id "HUERSP2_14q21.1"; transcript_id "HUERSP2_14q21.1"; locus "HUERSP2_14q21.1"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0109"; repClass "LTR"; repEnd "59"; repFamily "ERV1"; repLeft "1"; repStart "-713"; ### MER4B_14q21.1b ### chr14 rmsk gene 40734317 40735142 . + . gene_id "MER4B_14q21.1b"; transcript_id "MER4B_14q21.1b"; locus "MER4B_14q21.1b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0362"; model_cov "755"; model_pct "11.2"; chr14 rmsk exon 40734317 40734786 1349 + . gene_id "MER4B_14q21.1b"; transcript_id "MER4B_14q21.1b"; locus "MER4B_14q21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0362"; repClass "LTR"; repEnd "4121"; repFamily "ERV1"; repLeft "-2637"; repStart "3639"; chr14 rmsk exon 40734879 40735142 436 + . gene_id "MER4B_14q21.1b"; transcript_id "MER4B_14q21.1b"; locus "MER4B_14q21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0362"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "-2237"; repStart "4248"; ### ERVLE_14q21.1e ### chr14 rmsk gene 40765685 40766330 . - . gene_id "ERVLE_14q21.1e"; transcript_id "ERVLE_14q21.1e"; locus "ERVLE_14q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3016"; model_cov "805"; model_pct "14.2"; chr14 rmsk exon 40765685 40766330 754 - . gene_id "ERVLE_14q21.1e"; transcript_id "ERVLE_14q21.1e"; locus "ERVLE_14q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3016"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "3988"; repStart "-874"; ### ERVLB4_14q21.1c ### chr14 rmsk gene 40770860 40775829 . - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1434"; model_cov "3829"; model_pct "67.0"; chr14 rmsk exon 40770860 40771141 936 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "302"; repFamily "ERVL"; repLeft "1"; repStart "-95"; chr14 rmsk exon 40771410 40772156 7882 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "5340"; repFamily "ERVL"; repLeft "4590"; repStart "-374"; chr14 rmsk exon 40772480 40773487 7882 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "4589"; repFamily "ERVL"; repLeft "3527"; repStart "-1125"; chr14 rmsk exon 40773487 40773819 1388 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "2611"; repFamily "ERVL"; repLeft "2262"; repStart "-3103"; chr14 rmsk exon 40773847 40774667 2926 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "2204"; repFamily "ERVL"; repLeft "1358"; repStart "-3510"; chr14 rmsk exon 40775077 40775829 2652 - . gene_id "ERVLB4_14q21.1c"; transcript_id "ERVLB4_14q21.1c"; locus "ERVLB4_14q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1434"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "537"; repStart "-4355"; ### MER61_14q21.1 ### chr14 rmsk gene 40857838 40859002 . + . gene_id "MER61_14q21.1"; transcript_id "MER61_14q21.1"; locus "MER61_14q21.1"; category "internal"; intModel "MER61-int"; locid "MER61-int_0315"; model_cov "780"; model_pct "15.0"; chr14 rmsk exon 40857838 40858165 1645 + . gene_id "MER61_14q21.1"; transcript_id "MER61_14q21.1"; locus "MER61_14q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0315"; repClass "LTR"; repEnd "2873"; repFamily "ERV1"; repLeft "-2344"; repStart "2540"; chr14 rmsk exon 40858156 40859002 1922 + . gene_id "MER61_14q21.1"; transcript_id "MER61_14q21.1"; locus "MER61_14q21.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0315"; repClass "LTR"; repEnd "2802"; repFamily "ERV1"; repLeft "-2415"; repStart "2355"; ### MER4B_14q21.1c ### chr14 rmsk gene 40864358 40866132 . + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0363"; model_cov "1029"; model_pct "15.2"; chr14 rmsk exon 40864358 40865103 5403 + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0363"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 40865109 40865431 1838 + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0363"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "-6417"; repStart "7"; chr14 rmsk exon 40865443 40865736 2083 + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0363"; repClass "LTR"; repEnd "1042"; repFamily "ERV1"; repLeft "-5716"; repStart "701"; chr14 rmsk exon 40865766 40865917 2083 + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0363"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "-5560"; repStart "1043"; chr14 rmsk exon 40865933 40866132 1054 + . gene_id "MER4B_14q21.1c"; transcript_id "MER4B_14q21.1c"; locus "MER4B_14q21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0363"; repClass "LTR"; repEnd "2125"; repFamily "ERV1"; repLeft "-4633"; repStart "1926"; ### HERVL_14q21.1c ### chr14 rmsk gene 40866149 40866854 . - . gene_id "HERVL_14q21.1c"; transcript_id "HERVL_14q21.1c"; locus "HERVL_14q21.1c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1075"; model_cov "712"; model_pct "12.6"; chr14 rmsk exon 40866149 40866854 5024 - . gene_id "HERVL_14q21.1c"; transcript_id "HERVL_14q21.1c"; locus "HERVL_14q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1075"; repClass "LTR"; repEnd "2597"; repFamily "ERVL"; repLeft "1885"; repStart "-3057"; ### ERVLE_14q21.1f ### chr14 rmsk gene 40916619 40919017 . + . gene_id "ERVLE_14q21.1f"; transcript_id "ERVLE_14q21.1f"; locus "ERVLE_14q21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3017"; model_cov "1189"; model_pct "21.0"; chr14 rmsk exon 40916619 40916820 419 + . gene_id "ERVLE_14q21.1f"; transcript_id "ERVLE_14q21.1f"; locus "ERVLE_14q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3017"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "-3286"; repStart "2177"; chr14 rmsk exon 40917825 40918036 322 + . gene_id "ERVLE_14q21.1f"; transcript_id "ERVLE_14q21.1f"; locus "ERVLE_14q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3017"; repClass "LTR"; repEnd "3111"; repFamily "ERVL"; repLeft "-2556"; repStart "2895"; chr14 rmsk exon 40918261 40918725 505 + . gene_id "ERVLE_14q21.1f"; transcript_id "ERVLE_14q21.1f"; locus "ERVLE_14q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3017"; repClass "LTR"; repEnd "3683"; repFamily "ERVL"; repLeft "-1984"; repStart "3169"; chr14 rmsk exon 40918771 40919017 530 + . gene_id "ERVLE_14q21.1f"; transcript_id "ERVLE_14q21.1f"; locus "ERVLE_14q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3017"; repClass "LTR"; repEnd "3938"; repFamily "ERVL"; repLeft "-1729"; repStart "3683"; ### HERVL_14q21.1d ### chr14 rmsk gene 41233921 41240418 . - . gene_id "HERVL_14q21.1d"; transcript_id "HERVL_14q21.1d"; locus "HERVL_14q21.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1076"; model_cov "5653"; model_pct "100.0"; chr14 rmsk exon 41233921 41234323 2794 - . gene_id "HERVL_14q21.1d"; transcript_id "HERVL_14q21.1d"; locus "HERVL_14q21.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1076"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "1"; repStart "-45"; chr14 rmsk exon 41234324 41239946 43539 - . gene_id "HERVL_14q21.1d"; transcript_id "HERVL_14q21.1d"; locus "HERVL_14q21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1076"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 41239947 41240418 2995 - . gene_id "HERVL_14q21.1d"; transcript_id "HERVL_14q21.1d"; locus "HERVL_14q21.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1076"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_14q21.1b ### chr14 rmsk gene 41515871 41521881 . + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1015"; model_cov "5263"; model_pct "68.2"; chr14 rmsk exon 41515871 41516320 3363 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 41516323 41520197 25616 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr14 rmsk exon 41520200 41520840 3990 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 41520842 41521051 1294 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 41521050 41521430 2446 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr14 rmsk exon 41521431 41521881 3399 + . gene_id "HERVH_14q21.1b"; transcript_id "HERVH_14q21.1b"; locus "HERVH_14q21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1015"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_14q21.1g ### chr14 rmsk gene 41575775 41576857 . - . gene_id "ERVLE_14q21.1g"; transcript_id "ERVLE_14q21.1g"; locus "ERVLE_14q21.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3020"; model_cov "1029"; model_pct "18.2"; chr14 rmsk exon 41575775 41576341 989 - . gene_id "ERVLE_14q21.1g"; transcript_id "ERVLE_14q21.1g"; locus "ERVLE_14q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3020"; repClass "LTR"; repEnd "4662"; repFamily "ERVL"; repLeft "4076"; repStart "-1005"; chr14 rmsk exon 41576433 41576857 804 - . gene_id "ERVLE_14q21.1g"; transcript_id "ERVLE_14q21.1g"; locus "ERVLE_14q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3020"; repClass "LTR"; repEnd "3930"; repFamily "ERVL"; repLeft "3487"; repStart "-1737"; ### ERVLE_14q21.1h ### chr14 rmsk gene 41831126 41833621 . - . gene_id "ERVLE_14q21.1h"; transcript_id "ERVLE_14q21.1h"; locus "ERVLE_14q21.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3021"; model_cov "1872"; model_pct "33.0"; chr14 rmsk exon 41831126 41831331 978 - . gene_id "ERVLE_14q21.1h"; transcript_id "ERVLE_14q21.1h"; locus "ERVLE_14q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3021"; repClass "LTR"; repEnd "5569"; repFamily "ERVL"; repLeft "5360"; repStart "-98"; chr14 rmsk exon 41831674 41831779 2175 - . gene_id "ERVLE_14q21.1h"; transcript_id "ERVLE_14q21.1h"; locus "ERVLE_14q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3021"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "5188"; repStart "-378"; chr14 rmsk exon 41832153 41833621 2741 - . gene_id "ERVLE_14q21.1h"; transcript_id "ERVLE_14q21.1h"; locus "ERVLE_14q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3021"; repClass "LTR"; repEnd "5187"; repFamily "ERVL"; repLeft "3625"; repStart "-480"; ### HERVL_14q21.1e ### chr14 rmsk gene 42051764 42055307 . + . gene_id "HERVL_14q21.1e"; transcript_id "HERVL_14q21.1e"; locus "HERVL_14q21.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1077"; model_cov "3163"; model_pct "55.9"; chr14 rmsk exon 42051764 42052294 4118 + . gene_id "HERVL_14q21.1e"; transcript_id "HERVL_14q21.1e"; locus "HERVL_14q21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1077"; repClass "LTR"; repEnd "531"; repFamily "ERVL"; repLeft "-5123"; repStart "1"; chr14 rmsk exon 42052293 42053263 6987 + . gene_id "HERVL_14q21.1e"; transcript_id "HERVL_14q21.1e"; locus "HERVL_14q21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1077"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "-2801"; repStart "1848"; chr14 rmsk exon 42053263 42054884 11991 + . gene_id "HERVL_14q21.1e"; transcript_id "HERVL_14q21.1e"; locus "HERVL_14q21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1077"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4026"; chr14 rmsk exon 42054885 42055307 2947 + . gene_id "HERVL_14q21.1e"; transcript_id "HERVL_14q21.1e"; locus "HERVL_14q21.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1077"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLB4_14q21.1d ### chr14 rmsk gene 42159653 42165974 . - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1436"; model_cov "4069"; model_pct "71.2"; chr14 rmsk exon 42159653 42160027 809 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr14 rmsk exon 42160028 42160468 7730 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5206"; repStart "-1"; chr14 rmsk exon 42160923 42161366 7730 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "4776"; repStart "-509"; chr14 rmsk exon 42161664 42162771 7730 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "4775"; repFamily "ERVL"; repLeft "3668"; repStart "-939"; chr14 rmsk exon 42163743 42163771 7730 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "3667"; repFamily "ERVL"; repLeft "3640"; repStart "-2047"; chr14 rmsk exon 42164032 42164153 462 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "3648"; repFamily "ERVL"; repLeft "3526"; repStart "-2066"; chr14 rmsk exon 42164152 42165974 6999 - . gene_id "ERVLB4_14q21.1d"; transcript_id "ERVLB4_14q21.1d"; locus "ERVLB4_14q21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1436"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "1029"; repStart "-2808"; ### ERVLB4_14q21.1e ### chr14 rmsk gene 42172160 42173634 . - . gene_id "ERVLB4_14q21.1e"; transcript_id "ERVLB4_14q21.1e"; locus "ERVLB4_14q21.1e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1437"; model_cov "1038"; model_pct "18.2"; chr14 rmsk exon 42172160 42173158 3145 - . gene_id "ERVLB4_14q21.1e"; transcript_id "ERVLB4_14q21.1e"; locus "ERVLB4_14q21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1437"; repClass "LTR"; repEnd "1039"; repFamily "ERVL"; repLeft "1"; repStart "-4675"; chr14 rmsk exon 42173293 42173634 914 - . gene_id "ERVLB4_14q21.1e"; transcript_id "ERVLB4_14q21.1e"; locus "ERVLB4_14q21.1e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1437"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "1"; repStart "-51"; ### ERV316A3_14q21.1d ### chr14 rmsk gene 42193075 42194546 . + . gene_id "ERV316A3_14q21.1d"; transcript_id "ERV316A3_14q21.1d"; locus "ERV316A3_14q21.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2283"; model_cov "577"; model_pct "11.0"; chr14 rmsk exon 42193075 42193173 482 + . gene_id "ERV316A3_14q21.1d"; transcript_id "ERV316A3_14q21.1d"; locus "ERV316A3_14q21.1d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2283"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "-4"; repStart "385"; chr14 rmsk exon 42193557 42194135 931 + . gene_id "ERV316A3_14q21.1d"; transcript_id "ERV316A3_14q21.1d"; locus "ERV316A3_14q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2283"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "-106"; repStart "4543"; chr14 rmsk exon 42194247 42194546 714 + . gene_id "ERV316A3_14q21.1d"; transcript_id "ERV316A3_14q21.1d"; locus "ERV316A3_14q21.1d"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2283"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "-154"; repStart "40"; ### MER41_14q21.1 ### chr14 rmsk gene 42247365 42248062 . - . gene_id "MER41_14q21.1"; transcript_id "MER41_14q21.1"; locus "MER41_14q21.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0431"; model_cov "669"; model_pct "11.3"; chr14 rmsk exon 42247365 42247868 2048 - . gene_id "MER41_14q21.1"; transcript_id "MER41_14q21.1"; locus "MER41_14q21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0431"; repClass "LTR"; repEnd "1164"; repFamily "ERV1"; repLeft "663"; repStart "-4782"; chr14 rmsk exon 42247885 42248062 599 - . gene_id "MER41_14q21.1"; transcript_id "MER41_14q21.1"; locus "MER41_14q21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0431"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "229"; repStart "-5549"; ### HML3_14q21.1 ### chr14 rmsk gene 42307103 42314189 . - . gene_id "HML3_14q21.1"; transcript_id "HML3_14q21.1"; locus "HML3_14q21.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0185"; model_cov "5745"; model_pct "95.4"; chr14 rmsk exon 42307103 42307631 3788 - . gene_id "HML3_14q21.1"; transcript_id "HML3_14q21.1"; locus "HML3_14q21.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0185"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr14 rmsk exon 42307632 42309752 28396 - . gene_id "HML3_14q21.1"; transcript_id "HML3_14q21.1"; locus "HML3_14q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0185"; repClass "LTR"; repEnd "3932"; repFamily "ERVK"; repLeft "1761"; repStart "-2089"; chr14 rmsk exon 42309853 42313343 28396 - . gene_id "HML3_14q21.1"; transcript_id "HML3_14q21.1"; locus "HML3_14q21.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0185"; repClass "LTR"; repEnd "1760"; repFamily "ERVK"; repLeft "-1814"; repStart "-4261"; chr14 rmsk exon 42313679 42314189 3909 - . gene_id "HML3_14q21.1"; transcript_id "HML3_14q21.1"; locus "HML3_14q21.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0185"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_14q21.1 ### chr14 rmsk gene 42337803 42339387 . - . gene_id "HARLEQUIN_14q21.1"; transcript_id "HARLEQUIN_14q21.1"; locus "HARLEQUIN_14q21.1"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0148"; model_cov "1181"; model_pct "17.1"; chr14 rmsk exon 42337803 42338229 3369 - . gene_id "HARLEQUIN_14q21.1"; transcript_id "HARLEQUIN_14q21.1"; locus "HARLEQUIN_14q21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0148"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "1"; repStart "-16"; chr14 rmsk exon 42338230 42339387 8964 - . gene_id "HARLEQUIN_14q21.1"; transcript_id "HARLEQUIN_14q21.1"; locus "HARLEQUIN_14q21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0148"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5715"; repStart "0"; ### ERVLE_14q21.1i ### chr14 rmsk gene 42344620 42346477 . + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3022"; model_cov "1397"; model_pct "24.7"; chr14 rmsk exon 42344620 42344750 257 + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3022"; repClass "LTR"; repEnd "1631"; repFamily "ERVL"; repLeft "-4036"; repStart "1497"; chr14 rmsk exon 42344826 42345307 472 + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3022"; repClass "LTR"; repEnd "2214"; repFamily "ERVL"; repLeft "-3453"; repStart "1739"; chr14 rmsk exon 42345522 42345761 295 + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3022"; repClass "LTR"; repEnd "3187"; repFamily "ERVL"; repLeft "-2480"; repStart "2930"; chr14 rmsk exon 42345931 42346266 773 + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3022"; repClass "LTR"; repEnd "3448"; repFamily "ERVL"; repLeft "-2219"; repStart "3100"; chr14 rmsk exon 42346307 42346477 312 + . gene_id "ERVLE_14q21.1i"; transcript_id "ERVLE_14q21.1i"; locus "ERVLE_14q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3022"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "-1867"; repStart "3617"; ### ERVLE_14q21.1j ### chr14 rmsk gene 42436083 42436992 . - . gene_id "ERVLE_14q21.1j"; transcript_id "ERVLE_14q21.1j"; locus "ERVLE_14q21.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3023"; model_cov "915"; model_pct "16.1"; chr14 rmsk exon 42436083 42436992 304 - . gene_id "ERVLE_14q21.1j"; transcript_id "ERVLE_14q21.1j"; locus "ERVLE_14q21.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3023"; repClass "LTR"; repEnd "1410"; repFamily "ERVL"; repLeft "495"; repStart "-4257"; ### HERVL_14q21.1f ### chr14 rmsk gene 42454403 42459819 . + . gene_id "HERVL_14q21.1f"; transcript_id "HERVL_14q21.1f"; locus "HERVL_14q21.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1078"; model_cov "4783"; model_pct "84.6"; chr14 rmsk exon 42454403 42454964 1973 + . gene_id "HERVL_14q21.1f"; transcript_id "HERVL_14q21.1f"; locus "HERVL_14q21.1f"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1078"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "-98"; chr14 rmsk exon 42454968 42455300 18581 + . gene_id "HERVL_14q21.1f"; transcript_id "HERVL_14q21.1f"; locus "HERVL_14q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1078"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-5322"; repStart "5"; chr14 rmsk exon 42455344 42457840 18581 + . gene_id "HERVL_14q21.1f"; transcript_id "HERVL_14q21.1f"; locus "HERVL_14q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1078"; repClass "LTR"; repEnd "2810"; repFamily "ERVL"; repLeft "-2844"; repStart "333"; chr14 rmsk exon 42457837 42459819 14082 + . gene_id "HERVL_14q21.1f"; transcript_id "HERVL_14q21.1f"; locus "HERVL_14q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1078"; repClass "LTR"; repEnd "5475"; repFamily "ERVL"; repLeft "-179"; repStart "3496"; ### MER101_14q21.1 ### chr14 rmsk gene 42612815 42615152 . - . gene_id "MER101_14q21.1"; transcript_id "MER101_14q21.1"; locus "MER101_14q21.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0312"; model_cov "1981"; model_pct "29.8"; chr14 rmsk exon 42612815 42613126 2121 - . gene_id "MER101_14q21.1"; transcript_id "MER101_14q21.1"; locus "MER101_14q21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0312"; repClass "LTR"; repEnd "4756"; repFamily "ERV1"; repLeft "4453"; repStart "-1883"; chr14 rmsk exon 42613437 42615152 2520 - . gene_id "MER101_14q21.1"; transcript_id "MER101_14q21.1"; locus "MER101_14q21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0312"; repClass "LTR"; repEnd "4452"; repFamily "ERV1"; repLeft "2774"; repStart "-2187"; ### MER4_14q21.1b ### chr14 rmsk gene 42654551 42657400 . + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0655"; model_cov "2973"; model_pct "45.1"; chr14 rmsk exon 42654551 42655030 2767 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "-1166"; repFamily "ERV1"; repLeft "-7764"; repStart "-1598"; chr14 rmsk exon 42655160 42655210 330 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "-5712"; repStart "836"; chr14 rmsk exon 42655209 42655518 636 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "1099"; repFamily "ERV1"; repLeft "-5499"; repStart "500"; chr14 rmsk exon 42655513 42656179 3736 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "2488"; repFamily "ERV1"; repLeft "-4110"; repStart "1771"; chr14 rmsk exon 42656230 42656719 2233 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "-3321"; repStart "2737"; chr14 rmsk exon 42656798 42657400 3413 + . gene_id "MER4_14q21.1b"; transcript_id "MER4_14q21.1b"; locus "MER4_14q21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0655"; repClass "LTR"; repEnd "4553"; repFamily "ERV1"; repLeft "-2045"; repStart "3918"; ### HERVFRD_14q21.1 ### chr14 rmsk gene 42662770 42665063 . - . gene_id "HERVFRD_14q21.1"; transcript_id "HERVFRD_14q21.1"; locus "HERVFRD_14q21.1"; category "internal"; intModel "MER50-int"; locid "MER50-int_0147"; model_cov "2274"; model_pct "31.6"; chr14 rmsk exon 42662770 42664939 12835 - . gene_id "HERVFRD_14q21.1"; transcript_id "HERVFRD_14q21.1"; locus "HERVFRD_14q21.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0147"; repClass "LTR"; repEnd "3008"; repFamily "ERV1"; repLeft "830"; repStart "-4197"; chr14 rmsk exon 42664966 42665063 12835 - . gene_id "HERVFRD_14q21.1"; transcript_id "HERVFRD_14q21.1"; locus "HERVFRD_14q21.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0147"; repClass "LTR"; repEnd "829"; repFamily "ERV1"; repLeft "733"; repStart "-6376"; ### HERVL_14q21.1g ### chr14 rmsk gene 42760083 42761265 . - . gene_id "HERVL_14q21.1g"; transcript_id "HERVL_14q21.1g"; locus "HERVL_14q21.1g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1079"; model_cov "735"; model_pct "13.0"; chr14 rmsk exon 42760083 42760822 4949 - . gene_id "HERVL_14q21.1g"; transcript_id "HERVL_14q21.1g"; locus "HERVL_14q21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1079"; repClass "LTR"; repEnd "736"; repFamily "ERVL"; repLeft "1"; repStart "-4918"; chr14 rmsk exon 42760823 42761265 2750 - . gene_id "HERVL_14q21.1g"; transcript_id "HERVL_14q21.1g"; locus "HERVL_14q21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1079"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "16"; repStart "0"; ### HML5_14q21.1 ### chr14 rmsk gene 42804271 42807122 . + . gene_id "HML5_14q21.1"; transcript_id "HML5_14q21.1"; locus "HML5_14q21.1"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0097"; model_cov "2835"; model_pct "41.5"; chr14 rmsk exon 42804271 42807122 21473 + . gene_id "HML5_14q21.1"; transcript_id "HML5_14q21.1"; locus "HML5_14q21.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0097"; repClass "LTR"; repEnd "3663"; repFamily "ERVK"; repLeft "-3174"; repStart "828"; ### ERVLB4_14q21.1f ### chr14 rmsk gene 42992770 42994862 . + . gene_id "ERVLB4_14q21.1f"; transcript_id "ERVLB4_14q21.1f"; locus "ERVLB4_14q21.1f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1438"; model_cov "1369"; model_pct "24.0"; chr14 rmsk exon 42992770 42993533 561 + . gene_id "ERVLB4_14q21.1f"; transcript_id "ERVLB4_14q21.1f"; locus "ERVLB4_14q21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1438"; repClass "LTR"; repEnd "3464"; repFamily "ERVL"; repLeft "-2250"; repStart "2740"; chr14 rmsk exon 42994130 42994862 466 + . gene_id "ERVLB4_14q21.1f"; transcript_id "ERVLB4_14q21.1f"; locus "ERVLB4_14q21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1438"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-742"; repStart "4327"; ### HUERSP3_14q21.2 ### chr14 rmsk gene 43002171 43008568 . + . gene_id "HUERSP3_14q21.2"; transcript_id "HUERSP3_14q21.2"; locus "HUERSP3_14q21.2"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0168"; model_cov "5947"; model_pct "66.7"; chr14 rmsk exon 43002171 43002549 1979 + . gene_id "HUERSP3_14q21.2"; transcript_id "HUERSP3_14q21.2"; locus "HUERSP3_14q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0168"; repClass "LTR"; repEnd "2148"; repFamily "ERV1"; repLeft "-6771"; repStart "1760"; chr14 rmsk exon 43002947 43006950 14246 + . gene_id "HUERSP3_14q21.2"; transcript_id "HUERSP3_14q21.2"; locus "HUERSP3_14q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0168"; repClass "LTR"; repEnd "4328"; repFamily "ERV1"; repLeft "-4591"; repStart "429"; chr14 rmsk exon 43006928 43008568 6946 + . gene_id "HUERSP3_14q21.2"; transcript_id "HUERSP3_14q21.2"; locus "HUERSP3_14q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0168"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "7259"; ### ERV316A3_14q21.2a ### chr14 rmsk gene 43240495 43241425 . - . gene_id "ERV316A3_14q21.2a"; transcript_id "ERV316A3_14q21.2a"; locus "ERV316A3_14q21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2285"; model_cov "683"; model_pct "13.1"; chr14 rmsk exon 43240495 43240586 288 - . gene_id "ERV316A3_14q21.2a"; transcript_id "ERV316A3_14q21.2a"; locus "ERV316A3_14q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2285"; repClass "LTR"; repEnd "5182"; repFamily "ERVL"; repLeft "5092"; repStart "-44"; chr14 rmsk exon 43240636 43241123 1206 - . gene_id "ERV316A3_14q21.2a"; transcript_id "ERV316A3_14q21.2a"; locus "ERV316A3_14q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2285"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "4601"; repStart "-122"; chr14 rmsk exon 43241334 43241425 307 - . gene_id "ERV316A3_14q21.2a"; transcript_id "ERV316A3_14q21.2a"; locus "ERV316A3_14q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2285"; repClass "LTR"; repEnd "4343"; repFamily "ERVL"; repLeft "4253"; repStart "-883"; ### HERVL_14q21.2a ### chr14 rmsk gene 43281378 43284208 . - . gene_id "HERVL_14q21.2a"; transcript_id "HERVL_14q21.2a"; locus "HERVL_14q21.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1080"; model_cov "2295"; model_pct "40.6"; chr14 rmsk exon 43281378 43281946 1887 - . gene_id "HERVL_14q21.2a"; transcript_id "HERVL_14q21.2a"; locus "HERVL_14q21.2a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1080"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 43281947 43282357 2146 - . gene_id "HERVL_14q21.2a"; transcript_id "HERVL_14q21.2a"; locus "HERVL_14q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1080"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5238"; repStart "0"; chr14 rmsk exon 43282356 43284208 12632 - . gene_id "HERVL_14q21.2a"; transcript_id "HERVL_14q21.2a"; locus "HERVL_14q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1080"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "2537"; repStart "-1238"; ### ERVLE_14q21.2a ### chr14 rmsk gene 43334103 43336853 . - . gene_id "ERVLE_14q21.2a"; transcript_id "ERVLE_14q21.2a"; locus "ERVLE_14q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3025"; model_cov "852"; model_pct "15.0"; chr14 rmsk exon 43334103 43334352 312 - . gene_id "ERVLE_14q21.2a"; transcript_id "ERVLE_14q21.2a"; locus "ERVLE_14q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3025"; repClass "LTR"; repEnd "2841"; repFamily "ERVL"; repLeft "2589"; repStart "-2826"; chr14 rmsk exon 43335234 43335398 432 - . gene_id "ERVLE_14q21.2a"; transcript_id "ERVLE_14q21.2a"; locus "ERVLE_14q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3025"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "2290"; repStart "-3207"; chr14 rmsk exon 43336435 43336853 529 - . gene_id "ERVLE_14q21.2a"; transcript_id "ERVLE_14q21.2a"; locus "ERVLE_14q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3025"; repClass "LTR"; repEnd "1429"; repFamily "ERVL"; repLeft "999"; repStart "-4238"; ### ERVLE_14q21.2b ### chr14 rmsk gene 43478729 43480155 . - . gene_id "ERVLE_14q21.2b"; transcript_id "ERVLE_14q21.2b"; locus "ERVLE_14q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3026"; model_cov "1419"; model_pct "25.0"; chr14 rmsk exon 43478729 43478881 264 - . gene_id "ERVLE_14q21.2b"; transcript_id "ERVLE_14q21.2b"; locus "ERVLE_14q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3026"; repClass "LTR"; repEnd "4583"; repFamily "ERVL"; repLeft "4341"; repStart "-1084"; chr14 rmsk exon 43478896 43479246 981 - . gene_id "ERVLE_14q21.2b"; transcript_id "ERVLE_14q21.2b"; locus "ERVLE_14q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3026"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "3279"; repStart "-2024"; chr14 rmsk exon 43479315 43480155 1103 - . gene_id "ERVLE_14q21.2b"; transcript_id "ERVLE_14q21.2b"; locus "ERVLE_14q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3026"; repClass "LTR"; repEnd "3148"; repFamily "ERVL"; repLeft "2335"; repStart "-2519"; ### HERV30_14q21.2 ### chr14 rmsk gene 43534701 43539420 . + . gene_id "HERV30_14q21.2"; transcript_id "HERV30_14q21.2"; locus "HERV30_14q21.2"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0023"; model_cov "3521"; model_pct "42.6"; chr14 rmsk exon 43534701 43535279 4703 + . gene_id "HERV30_14q21.2"; transcript_id "HERV30_14q21.2"; locus "HERV30_14q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0023"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "137"; chr14 rmsk exon 43535280 43537329 15274 + . gene_id "HERV30_14q21.2"; transcript_id "HERV30_14q21.2"; locus "HERV30_14q21.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0023"; repClass "LTR"; repEnd "2045"; repFamily "ERV1"; repLeft "-6212"; repStart "1"; chr14 rmsk exon 43537330 43538784 9455 + . gene_id "HERV30_14q21.2"; transcript_id "HERV30_14q21.2"; locus "HERV30_14q21.2"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0023"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "6780"; chr14 rmsk exon 43538789 43539420 4311 + . gene_id "HERV30_14q21.2"; transcript_id "HERV30_14q21.2"; locus "HERV30_14q21.2"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0023"; repClass "LTR"; repEnd "671"; repFamily "ERV1"; repLeft "-51"; repStart "8"; ### MER41_14q21.2a ### chr14 rmsk gene 43576479 43583543 . + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0432"; model_cov "5185"; model_pct "87.2"; chr14 rmsk exon 43576479 43577032 4219 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0432"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 43577033 43578694 5365 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "1709"; repFamily "ERV1"; repLeft "-4237"; repStart "1"; chr14 rmsk exon 43578691 43578757 665 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "1934"; repFamily "ERV1"; repLeft "-4012"; repStart "1868"; chr14 rmsk exon 43579058 43579161 665 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1935"; chr14 rmsk exon 43579138 43579204 353 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "2220"; repFamily "ERV1"; repLeft "-3726"; repStart "2167"; chr14 rmsk exon 43579185 43580557 13793 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "-1876"; repStart "2667"; chr14 rmsk exon 43581159 43583001 13793 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0432"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4071"; chr14 rmsk exon 43583002 43583543 3946 + . gene_id "MER41_14q21.2a"; transcript_id "MER41_14q21.2a"; locus "MER41_14q21.2a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0432"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_14q21.2a ### chr14 rmsk gene 43611702 43615137 . + . gene_id "HERV4_14q21.2a"; transcript_id "HERV4_14q21.2a"; locus "HERV4_14q21.2a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0108"; model_cov "3434"; model_pct "52.5"; chr14 rmsk exon 43611702 43615137 20848 + . gene_id "HERV4_14q21.2a"; transcript_id "HERV4_14q21.2a"; locus "HERV4_14q21.2a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0108"; repClass "LTR"; repEnd "6268"; repFamily "ERV1"; repLeft "-271"; repStart "2834"; ### HERV4_14q21.2b ### chr14 rmsk gene 43615902 43617521 . + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0109"; model_cov "1278"; model_pct "19.5"; chr14 rmsk exon 43615902 43616512 844 + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0109"; repClass "LTR"; repEnd "6035"; repFamily "ERV1"; repLeft "-504"; repStart "5025"; chr14 rmsk exon 43616589 43616888 1214 + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0109"; repClass "LTR"; repEnd "6471"; repFamily "ERV1"; repLeft "-68"; repStart "6265"; chr14 rmsk exon 43617055 43617128 1214 + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0109"; repClass "LTR"; repEnd "6534"; repFamily "ERV1"; repLeft "-5"; repStart "6472"; chr14 rmsk exon 43617133 43617245 468 + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0109"; repClass "LTR"; repEnd "-5"; repFamily "ERV1"; repLeft "-487"; repStart "-157"; chr14 rmsk exon 43617214 43617521 1382 + . gene_id "HERV4_14q21.2b"; transcript_id "HERV4_14q21.2b"; locus "HERV4_14q21.2b"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0109"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "-16"; repStart "-12"; ### ERVLB4_14q21.2a ### chr14 rmsk gene 43634654 43635574 . - . gene_id "ERVLB4_14q21.2a"; transcript_id "ERVLB4_14q21.2a"; locus "ERVLB4_14q21.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1440"; model_cov "943"; model_pct "16.5"; chr14 rmsk exon 43634654 43635574 4490 - . gene_id "ERVLB4_14q21.2a"; transcript_id "ERVLB4_14q21.2a"; locus "ERVLB4_14q21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1440"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4771"; repStart "0"; ### HERVL40_14q21.2a ### chr14 rmsk gene 43659104 43660980 . - . gene_id "HERVL40_14q21.2a"; transcript_id "HERVL40_14q21.2a"; locus "HERVL40_14q21.2a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0375"; model_cov "1897"; model_pct "34.3"; chr14 rmsk exon 43659104 43660980 4614 - . gene_id "HERVL40_14q21.2a"; transcript_id "HERVL40_14q21.2a"; locus "HERVL40_14q21.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0375"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "2695"; repStart "-938"; ### MER34B_14q21.2 ### chr14 rmsk gene 43811306 43815085 . + . gene_id "MER34B_14q21.2"; transcript_id "MER34B_14q21.2"; locus "MER34B_14q21.2"; category "unknown"; intModel "MER34B-int"; locid "MER34B-int_0231"; model_cov "1750"; model_pct "32.7"; chr14 rmsk exon 43811306 43811555 921 + . gene_id "MER34B_14q21.2"; transcript_id "MER34B_14q21.2"; locus "MER34B_14q21.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0231"; repClass "LTR"; repEnd "-556"; repFamily "ERV1"; repLeft "-5912"; repStart "-814"; chr14 rmsk exon 43812629 43812788 332 + . gene_id "MER34B_14q21.2"; transcript_id "MER34B_14q21.2"; locus "MER34B_14q21.2"; repName "MER34C_"; geneRegion "ltr"; locid "MER34B-int_0231"; repClass "LTR"; repEnd "408"; repFamily "ERV1"; repLeft "-177"; repStart "231"; chr14 rmsk exon 43813220 43813410 363 + . gene_id "MER34B_14q21.2"; transcript_id "MER34B_14q21.2"; locus "MER34B_14q21.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0231"; repClass "LTR"; repEnd "1293"; repFamily "ERV1"; repLeft "-4063"; repStart "1186"; chr14 rmsk exon 43814032 43815085 1345 + . gene_id "MER34B_14q21.2"; transcript_id "MER34B_14q21.2"; locus "MER34B_14q21.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0231"; repClass "LTR"; repEnd "3408"; repFamily "ERV1"; repLeft "-1948"; repStart "2023"; ### ERVLB4_14q21.2b ### chr14 rmsk gene 43895387 43895762 . - . gene_id "ERVLB4_14q21.2b"; transcript_id "ERVLB4_14q21.2b"; locus "ERVLB4_14q21.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1441"; model_cov "589"; model_pct "10.3"; chr14 rmsk exon 43895387 43895762 544 - . gene_id "ERVLB4_14q21.2b"; transcript_id "ERVLB4_14q21.2b"; locus "ERVLB4_14q21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1441"; repClass "LTR"; repEnd "4794"; repFamily "ERVL"; repLeft "4205"; repStart "-920"; ### MER61_14q21.2 ### chr14 rmsk gene 44379270 44384559 . - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0316"; model_cov "4667"; model_pct "89.5"; chr14 rmsk exon 44379270 44379591 1653 - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0316"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 44379594 44381106 23175 - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0316"; repClass "LTR"; repEnd "5215"; repFamily "ERV1"; repLeft "3664"; repStart "-2"; chr14 rmsk exon 44381661 44383842 23175 - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0316"; repClass "LTR"; repEnd "3663"; repFamily "ERV1"; repLeft "1320"; repStart "-1554"; chr14 rmsk exon 44383839 44384509 2600 - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0316"; repClass "LTR"; repEnd "774"; repFamily "ERV1"; repLeft "1"; repStart "-4443"; chr14 rmsk exon 44384510 44384559 1785 - . gene_id "MER61_14q21.2"; transcript_id "MER61_14q21.2"; locus "MER61_14q21.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0316"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "292"; repStart "0"; ### HML5_14q21.2 ### chr14 rmsk gene 44415526 44419206 . + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0098"; model_cov "2329"; model_pct "34.1"; chr14 rmsk exon 44415526 44416009 3065 + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0098"; repClass "LTR"; repEnd "506"; repFamily "ERVK"; repLeft "-1"; repStart "1"; chr14 rmsk exon 44416023 44416789 5301 + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0098"; repClass "LTR"; repEnd "783"; repFamily "ERVK"; repLeft "-6054"; repStart "5"; chr14 rmsk exon 44416786 44417492 5273 + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0098"; repClass "LTR"; repEnd "3034"; repFamily "ERVK"; repLeft "-3803"; repStart "2314"; chr14 rmsk exon 44417494 44418301 6023 + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0098"; repClass "LTR"; repEnd "4385"; repFamily "ERVK"; repLeft "-2452"; repStart "3554"; chr14 rmsk exon 44418726 44419206 2933 + . gene_id "HML5_14q21.2"; transcript_id "HML5_14q21.2"; locus "HML5_14q21.2"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0098"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR19_14q21.2 ### chr14 rmsk gene 44428520 44430630 . + . gene_id "LTR19_14q21.2"; transcript_id "LTR19_14q21.2"; locus "LTR19_14q21.2"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0043"; model_cov "931"; model_pct "16.7"; chr14 rmsk exon 44428520 44429009 2331 + . gene_id "LTR19_14q21.2"; transcript_id "LTR19_14q21.2"; locus "LTR19_14q21.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0043"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "-10"; repStart "1"; chr14 rmsk exon 44429565 44429603 234 + . gene_id "LTR19_14q21.2"; transcript_id "LTR19_14q21.2"; locus "LTR19_14q21.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0043"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "448"; chr14 rmsk exon 44429604 44429766 5615 + . gene_id "LTR19_14q21.2"; transcript_id "LTR19_14q21.2"; locus "LTR19_14q21.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0043"; repClass "LTR"; repEnd "331"; repFamily "ERV1"; repLeft "-5255"; repStart "272"; chr14 rmsk exon 44429805 44430630 5615 + . gene_id "LTR19_14q21.2"; transcript_id "LTR19_14q21.2"; locus "LTR19_14q21.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0043"; repClass "LTR"; repEnd "1204"; repFamily "ERV1"; repLeft "-4382"; repStart "332"; ### HERVL_14q21.2b ### chr14 rmsk gene 44532134 44532665 . - . gene_id "HERVL_14q21.2b"; transcript_id "HERVL_14q21.2b"; locus "HERVL_14q21.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1082"; model_cov "601"; model_pct "10.6"; chr14 rmsk exon 44532134 44532665 393 - . gene_id "HERVL_14q21.2b"; transcript_id "HERVL_14q21.2b"; locus "HERVL_14q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1082"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "6"; repStart "-5047"; ### HERVL40_14q21.2b ### chr14 rmsk gene 44591977 44596311 . - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0376"; model_cov "2925"; model_pct "52.9"; chr14 rmsk exon 44591977 44592031 357 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "463"; repStart "0"; chr14 rmsk exon 44592099 44592402 888 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "338"; repFamily "ERVL"; repLeft "8"; repStart "-181"; chr14 rmsk exon 44592410 44592497 371 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5443"; repStart "0"; chr14 rmsk exon 44592613 44593400 2924 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "3891"; repFamily "ERVL"; repLeft "3086"; repStart "-1639"; chr14 rmsk exon 44593409 44593825 1588 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "2943"; repFamily "ERVL"; repLeft "2522"; repStart "-2587"; chr14 rmsk exon 44593825 44594837 2390 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "568"; repStart "-3919"; chr14 rmsk exon 44594894 44595475 1565 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "1"; repStart "-4960"; chr14 rmsk exon 44595477 44595774 1573 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "244"; repStart "0"; chr14 rmsk exon 44596072 44596311 1573 - . gene_id "HERVL40_14q21.2b"; transcript_id "HERVL40_14q21.2b"; locus "HERVL40_14q21.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0376"; repClass "LTR"; repEnd "243"; repFamily "ERVL"; repLeft "3"; repStart "-276"; ### ERVLE_14q21.2c ### chr14 rmsk gene 44638310 44639017 . + . gene_id "ERVLE_14q21.2c"; transcript_id "ERVLE_14q21.2c"; locus "ERVLE_14q21.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3030"; model_cov "714"; model_pct "12.6"; chr14 rmsk exon 44638310 44639017 1318 + . gene_id "ERVLE_14q21.2c"; transcript_id "ERVLE_14q21.2c"; locus "ERVLE_14q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3030"; repClass "LTR"; repEnd "3697"; repFamily "ERVL"; repLeft "-1970"; repStart "2983"; ### HERVL_14q21.2c ### chr14 rmsk gene 44664847 44671724 . + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1083"; model_cov "5649"; model_pct "99.9"; chr14 rmsk exon 44664847 44665348 2165 + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1083"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-100"; chr14 rmsk exon 44665594 44666040 3011 + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1083"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 44666043 44670515 39401 + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1083"; repClass "LTR"; repEnd "4522"; repFamily "ERVL"; repLeft "-1132"; repStart "3"; chr14 rmsk exon 44670570 44671069 39401 + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1083"; repClass "LTR"; repEnd "5027"; repFamily "ERVL"; repLeft "-627"; repStart "4523"; chr14 rmsk exon 44671108 44671724 39401 + . gene_id "HERVL_14q21.2c"; transcript_id "HERVL_14q21.2c"; locus "HERVL_14q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1083"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5028"; ### HERVW_14q21.2 ### chr14 rmsk gene 45019485 45023694 . - . gene_id "HERVW_14q21.2"; transcript_id "HERVW_14q21.2"; locus "HERVW_14q21.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0253"; model_cov "3855"; model_pct "44.7"; chr14 rmsk exon 45019485 45019811 2728 - . gene_id "HERVW_14q21.2"; transcript_id "HERVW_14q21.2"; locus "HERVW_14q21.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0253"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr14 rmsk exon 45019812 45023354 32174 - . gene_id "HERVW_14q21.2"; transcript_id "HERVW_14q21.2"; locus "HERVW_14q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0253"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "5082"; repStart "0"; chr14 rmsk exon 45023401 45023694 32174 - . gene_id "HERVW_14q21.2"; transcript_id "HERVW_14q21.2"; locus "HERVW_14q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0253"; repClass "LTR"; repEnd "5081"; repFamily "ERV1"; repLeft "4770"; repStart "-3545"; ### ERV316A3_14q21.2b ### chr14 rmsk gene 45285366 45286510 . + . gene_id "ERV316A3_14q21.2b"; transcript_id "ERV316A3_14q21.2b"; locus "ERV316A3_14q21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2286"; model_cov "1091"; model_pct "20.9"; chr14 rmsk exon 45285366 45286510 3299 + . gene_id "ERV316A3_14q21.2b"; transcript_id "ERV316A3_14q21.2b"; locus "ERV316A3_14q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2286"; repClass "LTR"; repEnd "3485"; repFamily "ERVL"; repLeft "-1741"; repStart "2394"; ### HUERSP1_14q21.2 ### chr14 rmsk gene 45317577 45320225 . - . gene_id "HUERSP1_14q21.2"; transcript_id "HUERSP1_14q21.2"; locus "HUERSP1_14q21.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0163"; model_cov "2842"; model_pct "45.4"; chr14 rmsk exon 45317577 45318179 3094 - . gene_id "HUERSP1_14q21.2"; transcript_id "HUERSP1_14q21.2"; locus "HUERSP1_14q21.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0163"; repClass "LTR"; repEnd "576"; repFamily "ERV1"; repLeft "1"; repStart "-115"; chr14 rmsk exon 45318180 45320225 7780 - . gene_id "HUERSP1_14q21.2"; transcript_id "HUERSP1_14q21.2"; locus "HUERSP1_14q21.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0163"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "3421"; repStart "0"; ### HERVH_14q21.2a ### chr14 rmsk gene 45494962 45499732 . - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1016"; model_cov "4606"; model_pct "59.7"; chr14 rmsk exon 45494962 45495317 2135 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-46"; chr14 rmsk exon 45495318 45495660 1729 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr14 rmsk exon 45495661 45495872 1264 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5602"; repStart "-1894"; chr14 rmsk exon 45495876 45497578 7379 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4551"; repStart "-1290"; chr14 rmsk exon 45497571 45497718 851 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr14 rmsk exon 45497698 45499732 12998 - . gene_id "HERVH_14q21.2a"; transcript_id "HERVH_14q21.2a"; locus "HERVH_14q21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1016"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1015"; repStart "-4718"; ### HML1_14q21.2 ### chr14 rmsk gene 45714251 45715445 . - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0098"; model_cov "1026"; model_pct "16.8"; chr14 rmsk exon 45714251 45714304 338 - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0098"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "5961"; repStart "-82"; chr14 rmsk exon 45714293 45714851 2717 - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0098"; repClass "LTR"; repEnd "5596"; repFamily "ERVK"; repLeft "5124"; repStart "-500"; chr14 rmsk exon 45714864 45715059 1107 - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0098"; repClass "LTR"; repEnd "1034"; repFamily "ERVK"; repLeft "837"; repStart "-5062"; chr14 rmsk exon 45715098 45715201 471 - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0098"; repClass "LTR"; repEnd "-467"; repFamily "ERVK"; repLeft "-567"; repStart "-6563"; chr14 rmsk exon 45715257 45715445 705 - . gene_id "HML1_14q21.2"; transcript_id "HML1_14q21.2"; locus "HML1_14q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0098"; repClass "LTR"; repEnd "-874"; repFamily "ERVK"; repLeft "-1078"; repStart "-6970"; ### LTR25_14q21.2a ### chr14 rmsk gene 45785893 45787573 . + . gene_id "LTR25_14q21.2a"; transcript_id "LTR25_14q21.2a"; locus "LTR25_14q21.2a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0101"; model_cov "1706"; model_pct "23.7"; chr14 rmsk exon 45785893 45787573 8411 + . gene_id "LTR25_14q21.2a"; transcript_id "LTR25_14q21.2a"; locus "LTR25_14q21.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0101"; repClass "LTR"; repEnd "1708"; repFamily "ERV1"; repLeft "-5480"; repStart "2"; ### LTR25_14q21.2b ### chr14 rmsk gene 45787639 45793102 . + . gene_id "LTR25_14q21.2b"; transcript_id "LTR25_14q21.2b"; locus "LTR25_14q21.2b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0102"; model_cov "7210"; model_pct "100.0"; chr14 rmsk exon 45787639 45787703 2988 + . gene_id "LTR25_14q21.2b"; transcript_id "LTR25_14q21.2b"; locus "LTR25_14q21.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0102"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-6707"; repStart "417"; chr14 rmsk exon 45788363 45788935 2988 + . gene_id "LTR25_14q21.2b"; transcript_id "LTR25_14q21.2b"; locus "LTR25_14q21.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0102"; repClass "LTR"; repEnd "1059"; repFamily "ERV1"; repLeft "-6129"; repStart "482"; chr14 rmsk exon 45788932 45789269 7799 + . gene_id "LTR25_14q21.2b"; transcript_id "LTR25_14q21.2b"; locus "LTR25_14q21.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0102"; repClass "LTR"; repEnd "2828"; repFamily "ERV1"; repLeft "-4360"; repStart "2586"; chr14 rmsk exon 45789563 45793102 18424 + . gene_id "LTR25_14q21.2b"; transcript_id "LTR25_14q21.2b"; locus "LTR25_14q21.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0102"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "-3"; repStart "858"; ### ERVLE_14q21.2d ### chr14 rmsk gene 45970416 45973209 . + . gene_id "ERVLE_14q21.2d"; transcript_id "ERVLE_14q21.2d"; locus "ERVLE_14q21.2d"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_3033"; model_cov "2511"; model_pct "44.3"; chr14 rmsk exon 45970416 45971243 2128 + . gene_id "ERVLE_14q21.2d"; transcript_id "ERVLE_14q21.2d"; locus "ERVLE_14q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3033"; repClass "LTR"; repEnd "2184"; repFamily "ERVL"; repLeft "-3483"; repStart "1329"; chr14 rmsk exon 45971249 45971564 1568 + . gene_id "ERVLE_14q21.2d"; transcript_id "ERVLE_14q21.2d"; locus "ERVLE_14q21.2d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3033"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "-96"; repStart "1"; chr14 rmsk exon 45971592 45972695 3194 + . gene_id "ERVLE_14q21.2d"; transcript_id "ERVLE_14q21.2d"; locus "ERVLE_14q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3033"; repClass "LTR"; repEnd "3511"; repFamily "ERVL"; repLeft "-2156"; repStart "2346"; chr14 rmsk exon 45972724 45973209 1576 + . gene_id "ERVLE_14q21.2d"; transcript_id "ERVLE_14q21.2d"; locus "ERVLE_14q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3033"; repClass "LTR"; repEnd "4116"; repFamily "ERVL"; repLeft "-1551"; repStart "3625"; ### HERVL_14q21.2d ### chr14 rmsk gene 45975351 45982027 . - . gene_id "HERVL_14q21.2d"; transcript_id "HERVL_14q21.2d"; locus "HERVL_14q21.2d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1084"; model_cov "5653"; model_pct "100.0"; chr14 rmsk exon 45975351 45975903 2025 - . gene_id "HERVL_14q21.2d"; transcript_id "HERVL_14q21.2d"; locus "HERVL_14q21.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1084"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr14 rmsk exon 45975904 45981490 40377 - . gene_id "HERVL_14q21.2d"; transcript_id "HERVL_14q21.2d"; locus "HERVL_14q21.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1084"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 45981491 45982027 1913 - . gene_id "HERVL_14q21.2d"; transcript_id "HERVL_14q21.2d"; locus "HERVL_14q21.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1084"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HERVH_14q21.2b ### chr14 rmsk gene 46012433 46018103 . - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1017"; model_cov "4905"; model_pct "63.6"; chr14 rmsk exon 46012433 46012857 2724 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 46012858 46013234 2280 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr14 rmsk exon 46013233 46013451 1344 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 46013456 46014116 4340 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr14 rmsk exon 46014119 46014621 3469 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr14 rmsk exon 46014612 46014759 805 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr14 rmsk exon 46014754 46017694 19207 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr14 rmsk exon 46017697 46018103 2713 - . gene_id "HERVH_14q21.2b"; transcript_id "HERVH_14q21.2b"; locus "HERVH_14q21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1017"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_14q21.2e ### chr14 rmsk gene 46292776 46293488 . - . gene_id "ERVLE_14q21.2e"; transcript_id "ERVLE_14q21.2e"; locus "ERVLE_14q21.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3035"; model_cov "606"; model_pct "10.7"; chr14 rmsk exon 46292776 46293021 492 - . gene_id "ERVLE_14q21.2e"; transcript_id "ERVLE_14q21.2e"; locus "ERVLE_14q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3035"; repClass "LTR"; repEnd "4334"; repFamily "ERVL"; repLeft "4082"; repStart "-1333"; chr14 rmsk exon 46293165 46293488 722 - . gene_id "ERVLE_14q21.2e"; transcript_id "ERVLE_14q21.2e"; locus "ERVLE_14q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3035"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3515"; repStart "-1798"; ### HERVH_14q21.2c ### chr14 rmsk gene 46544006 46549668 . + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1018"; model_cov "4898"; model_pct "63.5"; chr14 rmsk exon 46544006 46544465 3579 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 46544468 46547317 15477 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr14 rmsk exon 46547312 46547459 833 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr14 rmsk exon 46547464 46547949 3172 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr14 rmsk exon 46547952 46548615 4229 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 46548613 46548830 1321 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr14 rmsk exon 46548829 46549208 2582 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr14 rmsk exon 46549209 46549668 3555 + . gene_id "HERVH_14q21.2c"; transcript_id "HERVH_14q21.2c"; locus "HERVH_14q21.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1018"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_14q21.2b ### chr14 rmsk gene 46584045 46584908 . - . gene_id "MER41_14q21.2b"; transcript_id "MER41_14q21.2b"; locus "MER41_14q21.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0433"; model_cov "780"; model_pct "13.1"; chr14 rmsk exon 46584045 46584440 1727 - . gene_id "MER41_14q21.2b"; transcript_id "MER41_14q21.2b"; locus "MER41_14q21.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0433"; repClass "LTR"; repEnd "3378"; repFamily "ERV1"; repLeft "2941"; repStart "-2568"; chr14 rmsk exon 46584429 46584908 1877 - . gene_id "MER41_14q21.2b"; transcript_id "MER41_14q21.2b"; locus "MER41_14q21.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0433"; repClass "LTR"; repEnd "3172"; repFamily "ERV1"; repLeft "2829"; repStart "-2774"; ### ERVLE_14q21.2f ### chr14 rmsk gene 46603875 46605344 . - . gene_id "ERVLE_14q21.2f"; transcript_id "ERVLE_14q21.2f"; locus "ERVLE_14q21.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3037"; model_cov "825"; model_pct "14.6"; chr14 rmsk exon 46603875 46604276 971 - . gene_id "ERVLE_14q21.2f"; transcript_id "ERVLE_14q21.2f"; locus "ERVLE_14q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3037"; repClass "LTR"; repEnd "1420"; repFamily "ERVL"; repLeft "1004"; repStart "-4247"; chr14 rmsk exon 46604942 46605344 792 - . gene_id "ERVLE_14q21.2f"; transcript_id "ERVLE_14q21.2f"; locus "ERVLE_14q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3037"; repClass "LTR"; repEnd "915"; repFamily "ERVL"; repLeft "506"; repStart "-4752"; ### HERVH_14q21.3a ### chr14 rmsk gene 47104197 47108765 . + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1019"; model_cov "3574"; model_pct "46.3"; chr14 rmsk exon 47104197 47104677 3232 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chr14 rmsk exon 47104680 47107602 16374 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr14 rmsk exon 47107582 47107728 915 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr14 rmsk exon 47107719 47108224 2405 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "5092"; repFamily "ERV1"; repLeft "-2621"; repStart "4743"; chr14 rmsk exon 47108227 47108314 567 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7632"; chr14 rmsk exon 47108315 47108765 3393 + . gene_id "HERVH_14q21.3a"; transcript_id "HERVH_14q21.3a"; locus "HERVH_14q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1019"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_14q21.3a ### chr14 rmsk gene 47147289 47148559 . - . gene_id "ERV316A3_14q21.3a"; transcript_id "ERV316A3_14q21.3a"; locus "ERV316A3_14q21.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2288"; model_cov "751"; model_pct "14.4"; chr14 rmsk exon 47147289 47147706 1017 - . gene_id "ERV316A3_14q21.3a"; transcript_id "ERV316A3_14q21.3a"; locus "ERV316A3_14q21.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2288"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "6"; repStart "-2"; chr14 rmsk exon 47147813 47148559 1846 - . gene_id "ERV316A3_14q21.3a"; transcript_id "ERV316A3_14q21.3a"; locus "ERV316A3_14q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2288"; repClass "LTR"; repEnd "5060"; repFamily "ERVL"; repLeft "4309"; repStart "-166"; ### ERVLB4_14q21.3a ### chr14 rmsk gene 47290969 47293347 . - . gene_id "ERVLB4_14q21.3a"; transcript_id "ERVLB4_14q21.3a"; locus "ERVLB4_14q21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1442"; model_cov "1901"; model_pct "33.3"; chr14 rmsk exon 47290969 47291092 343 - . gene_id "ERVLB4_14q21.3a"; transcript_id "ERVLB4_14q21.3a"; locus "ERVLB4_14q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1442"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "3161"; repStart "-2425"; chr14 rmsk exon 47291333 47291440 331 - . gene_id "ERVLB4_14q21.3a"; transcript_id "ERVLB4_14q21.3a"; locus "ERVLB4_14q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1442"; repClass "LTR"; repEnd "2814"; repFamily "ERVL"; repLeft "2708"; repStart "-2900"; chr14 rmsk exon 47291830 47293347 1257 - . gene_id "ERVLB4_14q21.3a"; transcript_id "ERVLB4_14q21.3a"; locus "ERVLB4_14q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1442"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "1020"; repStart "-3027"; ### ERVLE_14q21.3a ### chr14 rmsk gene 47655122 47656738 . + . gene_id "ERVLE_14q21.3a"; transcript_id "ERVLE_14q21.3a"; locus "ERVLE_14q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3039"; model_cov "1631"; model_pct "28.8"; chr14 rmsk exon 47655122 47656738 2312 + . gene_id "ERVLE_14q21.3a"; transcript_id "ERVLE_14q21.3a"; locus "ERVLE_14q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3039"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "-1710"; repStart "2326"; ### ERV316A3_14q21.3b ### chr14 rmsk gene 47657306 47659053 . + . gene_id "ERV316A3_14q21.3b"; transcript_id "ERV316A3_14q21.3b"; locus "ERV316A3_14q21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2289"; model_cov "1267"; model_pct "24.2"; chr14 rmsk exon 47657306 47658379 2051 + . gene_id "ERV316A3_14q21.3b"; transcript_id "ERV316A3_14q21.3b"; locus "ERV316A3_14q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2289"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "-275"; repStart "3841"; chr14 rmsk exon 47658438 47658590 341 + . gene_id "ERV316A3_14q21.3b"; transcript_id "ERV316A3_14q21.3b"; locus "ERV316A3_14q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2289"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "-45"; repStart "5024"; chr14 rmsk exon 47658632 47659053 1366 + . gene_id "ERV316A3_14q21.3b"; transcript_id "ERV316A3_14q21.3b"; locus "ERV316A3_14q21.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2289"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "13"; ### ERVLE_14q21.3b ### chr14 rmsk gene 47708380 47711509 . + . gene_id "ERVLE_14q21.3b"; transcript_id "ERVLE_14q21.3b"; locus "ERVLE_14q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3040"; model_cov "3213"; model_pct "56.7"; chr14 rmsk exon 47708380 47711509 6158 + . gene_id "ERVLE_14q21.3b"; transcript_id "ERVLE_14q21.3b"; locus "ERVLE_14q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3040"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "-352"; repStart "2102"; ### ERV316A3_14q21.3c ### chr14 rmsk gene 47766449 47768467 . + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2290"; model_cov "917"; model_pct "17.5"; chr14 rmsk exon 47766449 47766621 408 + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2290"; repClass "LTR"; repEnd "3804"; repFamily "ERVL"; repLeft "-1422"; repStart "3624"; chr14 rmsk exon 47766753 47767309 1166 + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2290"; repClass "LTR"; repEnd "5045"; repFamily "ERVL"; repLeft "-181"; repStart "4475"; chr14 rmsk exon 47767672 47767839 1166 + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2290"; repClass "LTR"; repEnd "5213"; repFamily "ERVL"; repLeft "-13"; repStart "5046"; chr14 rmsk exon 47767969 47768109 404 + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2290"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "-120"; repStart "186"; chr14 rmsk exon 47768328 47768467 510 + . gene_id "ERV316A3_14q21.3c"; transcript_id "ERV316A3_14q21.3c"; locus "ERV316A3_14q21.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2290"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "306"; ### ERVLE_14q21.3c ### chr14 rmsk gene 47921804 47922399 . - . gene_id "ERVLE_14q21.3c"; transcript_id "ERVLE_14q21.3c"; locus "ERVLE_14q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3042"; model_cov "598"; model_pct "10.6"; chr14 rmsk exon 47921804 47922399 2294 - . gene_id "ERVLE_14q21.3c"; transcript_id "ERVLE_14q21.3c"; locus "ERVLE_14q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3042"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "1862"; repStart "-3207"; ### MER41_14q21.3 ### chr14 rmsk gene 47943338 47944443 . + . gene_id "MER41_14q21.3"; transcript_id "MER41_14q21.3"; locus "MER41_14q21.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0434"; model_cov "1095"; model_pct "18.4"; chr14 rmsk exon 47943338 47944443 5228 + . gene_id "MER41_14q21.3"; transcript_id "MER41_14q21.3"; locus "MER41_14q21.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0434"; repClass "LTR"; repEnd "4041"; repFamily "ERV1"; repLeft "-1905"; repStart "2946"; ### ERVLE_14q21.3d ### chr14 rmsk gene 48015744 48016392 . - . gene_id "ERVLE_14q21.3d"; transcript_id "ERVLE_14q21.3d"; locus "ERVLE_14q21.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3043"; model_cov "661"; model_pct "11.7"; chr14 rmsk exon 48015744 48016392 902 - . gene_id "ERVLE_14q21.3d"; transcript_id "ERVLE_14q21.3d"; locus "ERVLE_14q21.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3043"; repClass "LTR"; repEnd "2443"; repFamily "ERVL"; repLeft "1782"; repStart "-3224"; ### ERVLB4_14q21.3b ### chr14 rmsk gene 48028205 48029349 . + . gene_id "ERVLB4_14q21.3b"; transcript_id "ERVLB4_14q21.3b"; locus "ERVLB4_14q21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1443"; model_cov "781"; model_pct "13.7"; chr14 rmsk exon 48028205 48028722 426 + . gene_id "ERVLB4_14q21.3b"; transcript_id "ERVLB4_14q21.3b"; locus "ERVLB4_14q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1443"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "-4495"; repStart "607"; chr14 rmsk exon 48029187 48029349 276 + . gene_id "ERVLB4_14q21.3b"; transcript_id "ERVLB4_14q21.3b"; locus "ERVLB4_14q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1443"; repClass "LTR"; repEnd "2654"; repFamily "ERVL"; repLeft "-3060"; repStart "2485"; ### ERVLB4_14q21.3c ### chr14 rmsk gene 48078945 48080374 . + . gene_id "ERVLB4_14q21.3c"; transcript_id "ERVLB4_14q21.3c"; locus "ERVLB4_14q21.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1445"; model_cov "619"; model_pct "10.8"; chr14 rmsk exon 48078945 48078967 2251 + . gene_id "ERVLB4_14q21.3c"; transcript_id "ERVLB4_14q21.3c"; locus "ERVLB4_14q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1445"; repClass "LTR"; repEnd "5110"; repFamily "ERVL"; repLeft "-604"; repStart "5093"; chr14 rmsk exon 48079321 48079929 2251 + . gene_id "ERVLB4_14q21.3c"; transcript_id "ERVLB4_14q21.3c"; locus "ERVLB4_14q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1445"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5111"; chr14 rmsk exon 48079931 48080288 1667 + . gene_id "ERVLB4_14q21.3c"; transcript_id "ERVLB4_14q21.3c"; locus "ERVLB4_14q21.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1445"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "-46"; repStart "1"; chr14 rmsk exon 48080335 48080374 1667 + . gene_id "ERVLB4_14q21.3c"; transcript_id "ERVLB4_14q21.3c"; locus "ERVLB4_14q21.3c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1445"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-1"; repStart "369"; ### HERV9_14q21.3 ### chr14 rmsk gene 48199301 48203397 . + . gene_id "HERV9_14q21.3"; transcript_id "HERV9_14q21.3"; locus "HERV9_14q21.3"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0157"; model_cov "3515"; model_pct "41.7"; chr14 rmsk exon 48199301 48202418 25172 + . gene_id "HERV9_14q21.3"; transcript_id "HERV9_14q21.3"; locus "HERV9_14q21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0157"; repClass "LTR"; repEnd "7520"; repFamily "ERV1"; repLeft "-916"; repStart "4377"; chr14 rmsk exon 48202405 48202775 2866 + . gene_id "HERV9_14q21.3"; transcript_id "HERV9_14q21.3"; locus "HERV9_14q21.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0157"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "8064"; chr14 rmsk exon 48202776 48203397 4458 + . gene_id "HERV9_14q21.3"; transcript_id "HERV9_14q21.3"; locus "HERV9_14q21.3"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0157"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_14q21.3b ### chr14 rmsk gene 48255199 48260940 . - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1021"; model_cov "5116"; model_pct "66.3"; chr14 rmsk exon 48255199 48255605 2647 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 48255606 48255983 2292 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr14 rmsk exon 48255981 48256196 1359 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 48256198 48256861 4300 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 48256864 48257719 6315 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr14 rmsk exon 48257706 48260538 15768 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr14 rmsk exon 48260541 48260940 2511 - . gene_id "HERVH_14q21.3b"; transcript_id "HERVH_14q21.3b"; locus "HERVH_14q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1021"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_14q21.3c ### chr14 rmsk gene 48262396 48268282 . - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1022"; model_cov "5016"; model_pct "65.0"; chr14 rmsk exon 48262396 48262802 2636 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 48262845 48263180 1919 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "7676"; repFamily "ERV1"; repLeft "7322"; repStart "-37"; chr14 rmsk exon 48263179 48263395 1378 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 48263397 48264059 4333 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 48264062 48264555 3258 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr14 rmsk exon 48264555 48267869 18953 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr14 rmsk exon 48267872 48268282 2595 - . gene_id "HERVH_14q21.3c"; transcript_id "HERVH_14q21.3c"; locus "HERVH_14q21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1022"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_14q21.3 ### chr14 rmsk gene 48306809 48309001 . - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1086"; model_cov "1740"; model_pct "30.8"; chr14 rmsk exon 48306809 48307361 527 - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1086"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "4635"; repStart "-424"; chr14 rmsk exon 48307639 48307936 647 - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1086"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "4286"; repStart "-1072"; chr14 rmsk exon 48307981 48308125 395 - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1086"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "4272"; repStart "-1224"; chr14 rmsk exon 48308172 48308329 371 - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1086"; repClass "LTR"; repEnd "4171"; repFamily "ERVL"; repLeft "4016"; repStart "-1483"; chr14 rmsk exon 48308466 48309001 494 - . gene_id "HERVL_14q21.3"; transcript_id "HERVL_14q21.3"; locus "HERVL_14q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1086"; repClass "LTR"; repEnd "3691"; repFamily "ERVL"; repLeft "3155"; repStart "-1963"; ### ERV316A3_14q21.3d ### chr14 rmsk gene 48503150 48505202 . + . gene_id "ERV316A3_14q21.3d"; transcript_id "ERV316A3_14q21.3d"; locus "ERV316A3_14q21.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2292"; model_cov "2009"; model_pct "38.4"; chr14 rmsk exon 48503150 48505202 3060 + . gene_id "ERV316A3_14q21.3d"; transcript_id "ERV316A3_14q21.3d"; locus "ERV316A3_14q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2292"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "-1699"; repStart "1518"; ### HERVIP10FH_14q21.3 ### chr14 rmsk gene 48558519 48563969 . + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0139"; model_cov "5300"; model_pct "100.0"; chr14 rmsk exon 48558519 48560391 10923 + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0139"; repClass "LTR"; repEnd "1722"; repFamily "ERV1"; repLeft "-3380"; repStart "-1528"; chr14 rmsk exon 48560359 48561002 6833 + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0139"; repClass "LTR"; repEnd "2606"; repFamily "ERV1"; repLeft "-2496"; repStart "1965"; chr14 rmsk exon 48562029 48562646 6833 + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0139"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "-1870"; repStart "2607"; chr14 rmsk exon 48562636 48563403 3869 + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0139"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "-5"; repStart "4313"; chr14 rmsk exon 48563452 48563969 3131 + . gene_id "HERVIP10FH_14q21.3"; transcript_id "HERVIP10FH_14q21.3"; locus "HERVIP10FH_14q21.3"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10FH-int_0139"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### ERV316A3_14q21.3e ### chr14 rmsk gene 49090825 49092051 . + . gene_id "ERV316A3_14q21.3e"; transcript_id "ERV316A3_14q21.3e"; locus "ERV316A3_14q21.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2293"; model_cov "649"; model_pct "12.4"; chr14 rmsk exon 49090825 49091490 944 + . gene_id "ERV316A3_14q21.3e"; transcript_id "ERV316A3_14q21.3e"; locus "ERV316A3_14q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2293"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "-305"; repStart "4272"; chr14 rmsk exon 49091889 49092051 252 + . gene_id "ERV316A3_14q21.3e"; transcript_id "ERV316A3_14q21.3e"; locus "ERV316A3_14q21.3e"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2293"; repClass "LTR"; repEnd "167"; repFamily "ERVL"; repLeft "-401"; repStart "13"; ### ERVLE_14q21.3e ### chr14 rmsk gene 50272402 50278076 . + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3044"; model_cov "2585"; model_pct "45.6"; chr14 rmsk exon 50272402 50273325 3943 + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3044"; repClass "LTR"; repEnd "4037"; repFamily "ERVL"; repLeft "-1630"; repStart "3057"; chr14 rmsk exon 50275233 50276443 7083 + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3044"; repClass "LTR"; repEnd "5356"; repFamily "ERVL"; repLeft "-311"; repStart "4060"; chr14 rmsk exon 50276814 50276844 7083 + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3044"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "-286"; repStart "5357"; chr14 rmsk exon 50277069 50277369 7083 + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3044"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5382"; chr14 rmsk exon 50277949 50278076 513 + . gene_id "ERVLE_14q21.3e"; transcript_id "ERVLE_14q21.3e"; locus "ERVLE_14q21.3e"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3044"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-19"; repStart "456"; ### ERVLB4_14q21.3d ### chr14 rmsk gene 50377534 50381467 . + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1447"; model_cov "3229"; model_pct "56.5"; chr14 rmsk exon 50377534 50377642 304 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "-4884"; repStart "720"; chr14 rmsk exon 50377780 50378519 773 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "1485"; repFamily "ERVL"; repLeft "-4229"; repStart "733"; chr14 rmsk exon 50378830 50378854 773 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "1503"; repFamily "ERVL"; repLeft "-4211"; repStart "1486"; chr14 rmsk exon 50379146 50380798 3234 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "2890"; repFamily "ERVL"; repLeft "-2824"; repStart "1016"; chr14 rmsk exon 50380966 50381215 3234 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "3155"; repFamily "ERVL"; repLeft "-2559"; repStart "2891"; chr14 rmsk exon 50381226 50381322 312 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "3393"; repFamily "ERVL"; repLeft "-2321"; repStart "3296"; chr14 rmsk exon 50381355 50381467 317 + . gene_id "ERVLB4_14q21.3d"; transcript_id "ERVLB4_14q21.3d"; locus "ERVLB4_14q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1447"; repClass "LTR"; repEnd "3641"; repFamily "ERVL"; repLeft "-2073"; repStart "3526"; ### ERVLE_14q22.1 ### chr14 rmsk gene 50539759 50544229 . + . gene_id "ERVLE_14q22.1"; transcript_id "ERVLE_14q22.1"; locus "ERVLE_14q22.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3045"; model_cov "4147"; model_pct "73.2"; chr14 rmsk exon 50539759 50541738 6514 + . gene_id "ERVLE_14q22.1"; transcript_id "ERVLE_14q22.1"; locus "ERVLE_14q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3045"; repClass "LTR"; repEnd "3185"; repFamily "ERVL"; repLeft "-2482"; repStart "1008"; chr14 rmsk exon 50542037 50542192 6514 + . gene_id "ERVLE_14q22.1"; transcript_id "ERVLE_14q22.1"; locus "ERVLE_14q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3045"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "-2337"; repStart "3186"; chr14 rmsk exon 50542474 50544229 6514 + . gene_id "ERVLE_14q22.1"; transcript_id "ERVLE_14q22.1"; locus "ERVLE_14q22.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3045"; repClass "LTR"; repEnd "5157"; repFamily "ERVL"; repLeft "-510"; repStart "3331"; ### LTR57_14q22.1 ### chr14 rmsk gene 50544972 50550643 . + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0143"; model_cov "4473"; model_pct "83.7"; chr14 rmsk exon 50544972 50545369 2395 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 50545370 50545651 1542 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "-5061"; repStart "1"; chr14 rmsk exon 50545793 50545859 513 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "-4975"; repStart "302"; chr14 rmsk exon 50545993 50546835 4964 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "1324"; repFamily "ERVL"; repLeft "-4019"; repStart "508"; chr14 rmsk exon 50547078 50548515 13070 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "2761"; repFamily "ERVL"; repLeft "-2582"; repStart "1326"; chr14 rmsk exon 50548810 50549273 13070 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "3210"; repFamily "ERVL"; repLeft "-2133"; repStart "2762"; chr14 rmsk exon 50549276 50550643 4831 + . gene_id "LTR57_14q22.1"; transcript_id "LTR57_14q22.1"; locus "LTR57_14q22.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0143"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-350"; repStart "3566"; ### HERVH_14q22.1a ### chr14 rmsk gene 50893162 50896882 . + . gene_id "HERVH_14q22.1a"; transcript_id "HERVH_14q22.1a"; locus "HERVH_14q22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1023"; model_cov "2801"; model_pct "36.3"; chr14 rmsk exon 50893162 50893610 3428 + . gene_id "HERVH_14q22.1a"; transcript_id "HERVH_14q22.1a"; locus "HERVH_14q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1023"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 50893613 50896276 19060 + . gene_id "HERVH_14q22.1a"; transcript_id "HERVH_14q22.1a"; locus "HERVH_14q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1023"; repClass "LTR"; repEnd "2690"; repFamily "ERV1"; repLeft "-5023"; repStart "1"; chr14 rmsk exon 50896276 50896391 824 + . gene_id "HERVH_14q22.1a"; transcript_id "HERVH_14q22.1a"; locus "HERVH_14q22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1023"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7601"; chr14 rmsk exon 50896392 50896882 2796 + . gene_id "HERVH_14q22.1a"; transcript_id "HERVH_14q22.1a"; locus "HERVH_14q22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1023"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "-21"; ### ERV316A3_14q22.1 ### chr14 rmsk gene 51194956 51196939 . + . gene_id "ERV316A3_14q22.1"; transcript_id "ERV316A3_14q22.1"; locus "ERV316A3_14q22.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2294"; model_cov "1483"; model_pct "28.4"; chr14 rmsk exon 51194956 51196415 3145 + . gene_id "ERV316A3_14q22.1"; transcript_id "ERV316A3_14q22.1"; locus "ERV316A3_14q22.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2294"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "-16"; repStart "3727"; chr14 rmsk exon 51196432 51196485 254 + . gene_id "ERV316A3_14q22.1"; transcript_id "ERV316A3_14q22.1"; locus "ERV316A3_14q22.1"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2294"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "-402"; repStart "1"; chr14 rmsk exon 51196813 51196939 476 + . gene_id "ERV316A3_14q22.1"; transcript_id "ERV316A3_14q22.1"; locus "ERV316A3_14q22.1"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2294"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-50"; repStart "281"; ### HERVL_14q22.1 ### chr14 rmsk gene 51373849 51377284 . + . gene_id "HERVL_14q22.1"; transcript_id "HERVL_14q22.1"; locus "HERVL_14q22.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1087"; model_cov "2959"; model_pct "52.3"; chr14 rmsk exon 51373849 51376815 23233 + . gene_id "HERVL_14q22.1"; transcript_id "HERVL_14q22.1"; locus "HERVL_14q22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1087"; repClass "LTR"; repEnd "3790"; repFamily "ERVL"; repLeft "-1864"; repStart "831"; chr14 rmsk exon 51376817 51377284 1391 + . gene_id "HERVL_14q22.1"; transcript_id "HERVL_14q22.1"; locus "HERVL_14q22.1"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1087"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "110"; ### HERVE_14q22.1 ### chr14 rmsk gene 51748587 51752556 . + . gene_id "HERVE_14q22.1"; transcript_id "HERVE_14q22.1"; locus "HERVE_14q22.1"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0148"; model_cov "3947"; model_pct "50.5"; chr14 rmsk exon 51748587 51751343 19757 + . gene_id "HERVE_14q22.1"; transcript_id "HERVE_14q22.1"; locus "HERVE_14q22.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0148"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3939"; repStart "1108"; chr14 rmsk exon 51751340 51752556 8530 + . gene_id "HERVE_14q22.1"; transcript_id "HERVE_14q22.1"; locus "HERVE_14q22.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0148"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "3984"; ### HML3_14q22.1 ### chr14 rmsk gene 52164599 52172577 . + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0187"; model_cov "5163"; model_pct "85.7"; chr14 rmsk exon 52164599 52165103 4016 + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0187"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr14 rmsk exon 52165104 52165654 3929 + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0187"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr14 rmsk exon 52165653 52166572 7649 + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0187"; repClass "LTR"; repEnd "2356"; repFamily "ERVK"; repLeft "-3665"; repStart "1436"; chr14 rmsk exon 52168473 52172109 32419 + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0187"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "2357"; chr14 rmsk exon 52172122 52172577 3165 + . gene_id "HML3_14q22.1"; transcript_id "HML3_14q22.1"; locus "HML3_14q22.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0187"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "37"; ### PRIMA4_14q22.1 ### chr14 rmsk gene 52280360 52286612 . + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0190"; model_cov "5252"; model_pct "63.5"; chr14 rmsk exon 52280360 52280948 2838 + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0190"; repClass "LTR"; repEnd "593"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr14 rmsk exon 52280949 52282960 10776 + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0190"; repClass "LTR"; repEnd "2146"; repFamily "ERV1"; repLeft "-6124"; repStart "10"; chr14 rmsk exon 52282980 52285588 18188 + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0190"; repClass "LTR"; repEnd "7117"; repFamily "ERV1"; repLeft "-1153"; repStart "4543"; chr14 rmsk exon 52285587 52286059 2087 + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0190"; repClass "LTR"; repEnd "8269"; repFamily "ERV1"; repLeft "-1"; repStart "7727"; chr14 rmsk exon 52286063 52286612 2557 + . gene_id "PRIMA4_14q22.1"; transcript_id "PRIMA4_14q22.1"; locus "PRIMA4_14q22.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0190"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "9"; ### HERVH_14q22.1b ### chr14 rmsk gene 53128745 53135552 . + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1024"; model_cov "6366"; model_pct "82.5"; chr14 rmsk exon 53128745 53129174 2539 + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1024"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 53129175 53132307 10604 + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1024"; repClass "LTR"; repEnd "3594"; repFamily "ERV1"; repLeft "-4119"; repStart "1"; chr14 rmsk exon 53132289 53134566 13545 + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1024"; repClass "LTR"; repEnd "6017"; repFamily "ERV1"; repLeft "-1696"; repStart "3800"; chr14 rmsk exon 53134559 53135122 3470 + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1024"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr14 rmsk exon 53135123 53135552 2570 + . gene_id "HERVH_14q22.1b"; transcript_id "HERVH_14q22.1b"; locus "HERVH_14q22.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1024"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_14q22.1 ### chr14 rmsk gene 53175755 53182025 . - . gene_id "HERVIP10FH_14q22.1"; transcript_id "HERVIP10FH_14q22.1"; locus "HERVIP10FH_14q22.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0140"; model_cov "5101"; model_pct "100.0"; chr14 rmsk exon 53175755 53176228 3597 - . gene_id "HERVIP10FH_14q22.1"; transcript_id "HERVIP10FH_14q22.1"; locus "HERVIP10FH_14q22.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0140"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 53176229 53181383 42088 - . gene_id "HERVIP10FH_14q22.1"; transcript_id "HERVIP10FH_14q22.1"; locus "HERVIP10FH_14q22.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0140"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 53181384 53182025 3307 - . gene_id "HERVIP10FH_14q22.1"; transcript_id "HERVIP10FH_14q22.1"; locus "HERVIP10FH_14q22.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0140"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_14q22.1a ### chr14 rmsk gene 53254370 53258280 . - . gene_id "MER4_14q22.1a"; transcript_id "MER4_14q22.1a"; locus "MER4_14q22.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0656"; model_cov "4506"; model_pct "68.3"; chr14 rmsk exon 53254370 53254800 2908 - . gene_id "MER4_14q22.1a"; transcript_id "MER4_14q22.1a"; locus "MER4_14q22.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0656"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "2"; repStart "-4"; chr14 rmsk exon 53254810 53256601 15423 - . gene_id "MER4_14q22.1a"; transcript_id "MER4_14q22.1a"; locus "MER4_14q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0656"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4761"; repStart "-2"; chr14 rmsk exon 53256894 53258280 15423 - . gene_id "MER4_14q22.1a"; transcript_id "MER4_14q22.1a"; locus "MER4_14q22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0656"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "2089"; repStart "-1838"; ### MER4_14q22.1b ### chr14 rmsk gene 53258522 53262061 . - . gene_id "MER4_14q22.1b"; transcript_id "MER4_14q22.1b"; locus "MER4_14q22.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0657"; model_cov "3544"; model_pct "53.7"; chr14 rmsk exon 53258522 53258990 15423 - . gene_id "MER4_14q22.1b"; transcript_id "MER4_14q22.1b"; locus "MER4_14q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0657"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "3853"; repStart "-1838"; chr14 rmsk exon 53259298 53260354 9032 - . gene_id "MER4_14q22.1b"; transcript_id "MER4_14q22.1b"; locus "MER4_14q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0657"; repClass "LTR"; repEnd "1999"; repFamily "ERV1"; repLeft "271"; repStart "-4599"; chr14 rmsk exon 53260856 53261611 7775 - . gene_id "MER4_14q22.1b"; transcript_id "MER4_14q22.1b"; locus "MER4_14q22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0657"; repClass "LTR"; repEnd "910"; repFamily "ERV1"; repLeft "1"; repStart "-5688"; chr14 rmsk exon 53261613 53262061 3118 - . gene_id "MER4_14q22.1b"; transcript_id "MER4_14q22.1b"; locus "MER4_14q22.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0657"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL18_14q22.1 ### chr14 rmsk gene 53273554 53279365 . - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0130"; model_cov "4857"; model_pct "80.3"; chr14 rmsk exon 53273554 53274064 2375 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 53274066 53275717 10180 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "4393"; repStart "0"; chr14 rmsk exon 53275719 53276601 2690 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr14 rmsk exon 53276601 53278114 8908 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "871"; repStart "-3595"; chr14 rmsk exon 53278122 53278872 3420 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "764"; repFamily "ERVL"; repLeft "1"; repStart "-5283"; chr14 rmsk exon 53278881 53279365 1909 - . gene_id "HERVL18_14q22.1"; transcript_id "HERVL18_14q22.1"; locus "HERVL18_14q22.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0130"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVW_14q22.1 ### chr14 rmsk gene 53361643 53363005 . + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0254"; model_cov "1050"; model_pct "12.2"; chr14 rmsk exon 53361643 53361978 2581 + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0254"; repClass "LTR"; repEnd "3645"; repFamily "ERV1"; repLeft "-4981"; repStart "3310"; chr14 rmsk exon 53361979 53362365 3013 + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0254"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5633"; chr14 rmsk exon 53362359 53362397 259 + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0254"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr14 rmsk exon 53362388 53362680 2329 + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0254"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr14 rmsk exon 53362681 53363005 2389 + . gene_id "HERVW_14q22.1"; transcript_id "HERVW_14q22.1"; locus "HERVW_14q22.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0254"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVL_14q22.1 ### chr14 rmsk gene 53557124 53562143 . + . gene_id "ERVL_14q22.1"; transcript_id "ERVL_14q22.1"; locus "ERVL_14q22.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0365"; model_cov "5006"; model_pct "87.0"; chr14 rmsk exon 53557124 53557376 1927 + . gene_id "ERVL_14q22.1"; transcript_id "ERVL_14q22.1"; locus "ERVL_14q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0365"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "-5401"; repStart "104"; chr14 rmsk exon 53557375 53562143 28793 + . gene_id "ERVL_14q22.1"; transcript_id "ERVL_14q22.1"; locus "ERVL_14q22.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0365"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-441"; repStart "562"; ### ERVLE_14q22.2a ### chr14 rmsk gene 53708555 53709232 . - . gene_id "ERVLE_14q22.2a"; transcript_id "ERVLE_14q22.2a"; locus "ERVLE_14q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3048"; model_cov "684"; model_pct "12.1"; chr14 rmsk exon 53708555 53709232 428 - . gene_id "ERVLE_14q22.2a"; transcript_id "ERVLE_14q22.2a"; locus "ERVLE_14q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3048"; repClass "LTR"; repEnd "800"; repFamily "ERVL"; repLeft "116"; repStart "-4867"; ### ERVLE_14q22.2b ### chr14 rmsk gene 54025760 54027196 . - . gene_id "ERVLE_14q22.2b"; transcript_id "ERVLE_14q22.2b"; locus "ERVLE_14q22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3049"; model_cov "1226"; model_pct "21.6"; chr14 rmsk exon 54025760 54026155 917 - . gene_id "ERVLE_14q22.2b"; transcript_id "ERVLE_14q22.2b"; locus "ERVLE_14q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3049"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "3894"; repStart "-1339"; chr14 rmsk exon 54026410 54026965 1513 - . gene_id "ERVLE_14q22.2b"; transcript_id "ERVLE_14q22.2b"; locus "ERVLE_14q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3049"; repClass "LTR"; repEnd "3882"; repFamily "ERVL"; repLeft "3311"; repStart "-1785"; chr14 rmsk exon 54026984 54027196 588 - . gene_id "ERVLE_14q22.2b"; transcript_id "ERVLE_14q22.2b"; locus "ERVLE_14q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3049"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "2207"; repStart "-3239"; ### ERV316A3_14q22.2 ### chr14 rmsk gene 54078312 54081111 . - . gene_id "ERV316A3_14q22.2"; transcript_id "ERV316A3_14q22.2"; locus "ERV316A3_14q22.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2296"; model_cov "1981"; model_pct "37.9"; chr14 rmsk exon 54078312 54078729 1300 - . gene_id "ERV316A3_14q22.2"; transcript_id "ERV316A3_14q22.2"; locus "ERV316A3_14q22.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2296"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "13"; repStart "0"; chr14 rmsk exon 54078795 54080101 3695 - . gene_id "ERV316A3_14q22.2"; transcript_id "ERV316A3_14q22.2"; locus "ERV316A3_14q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2296"; repClass "LTR"; repEnd "5146"; repFamily "ERVL"; repLeft "3827"; repStart "-80"; chr14 rmsk exon 54080402 54081111 3695 - . gene_id "ERV316A3_14q22.2"; transcript_id "ERV316A3_14q22.2"; locus "ERV316A3_14q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2296"; repClass "LTR"; repEnd "3826"; repFamily "ERVL"; repLeft "3164"; repStart "-1400"; ### ERVLE_14q22.3a ### chr14 rmsk gene 55465406 55466395 . + . gene_id "ERVLE_14q22.3a"; transcript_id "ERVLE_14q22.3a"; locus "ERVLE_14q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3050"; model_cov "591"; model_pct "10.4"; chr14 rmsk exon 55465406 55465672 624 + . gene_id "ERVLE_14q22.3a"; transcript_id "ERVLE_14q22.3a"; locus "ERVLE_14q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3050"; repClass "LTR"; repEnd "4977"; repFamily "ERVL"; repLeft "-690"; repStart "4691"; chr14 rmsk exon 55466052 55466395 550 + . gene_id "ERVLE_14q22.3a"; transcript_id "ERVLE_14q22.3a"; locus "ERVLE_14q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3050"; repClass "LTR"; repEnd "5358"; repFamily "ERVL"; repLeft "-309"; repStart "5053"; ### HERVEA_14q22.3 ### chr14 rmsk gene 55819549 55821618 . - . gene_id "HERVEA_14q22.3"; transcript_id "HERVEA_14q22.3"; locus "HERVEA_14q22.3"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0077"; model_cov "1621"; model_pct "20.7"; chr14 rmsk exon 55819549 55820017 2354 - . gene_id "HERVEA_14q22.3"; transcript_id "HERVEA_14q22.3"; locus "HERVEA_14q22.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0077"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 55820018 55821618 10953 - . gene_id "HERVEA_14q22.3"; transcript_id "HERVEA_14q22.3"; locus "HERVEA_14q22.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0077"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "6226"; repStart "0"; ### ERV316A3_14q22.3a ### chr14 rmsk gene 56416997 56418621 . + . gene_id "ERV316A3_14q22.3a"; transcript_id "ERV316A3_14q22.3a"; locus "ERV316A3_14q22.3a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2297"; model_cov "727"; model_pct "13.9"; chr14 rmsk exon 56416997 56417202 798 + . gene_id "ERV316A3_14q22.3a"; transcript_id "ERV316A3_14q22.3a"; locus "ERV316A3_14q22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2297"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-42"; repStart "193"; chr14 rmsk exon 56417219 56417826 1793 + . gene_id "ERV316A3_14q22.3a"; transcript_id "ERV316A3_14q22.3a"; locus "ERV316A3_14q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2297"; repClass "LTR"; repEnd "5134"; repFamily "ERVL"; repLeft "-92"; repStart "4496"; chr14 rmsk exon 56418119 56418214 1793 + . gene_id "ERV316A3_14q22.3a"; transcript_id "ERV316A3_14q22.3a"; locus "ERV316A3_14q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2297"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "5135"; chr14 rmsk exon 56418216 56418621 1293 + . gene_id "ERV316A3_14q22.3a"; transcript_id "ERV316A3_14q22.3a"; locus "ERV316A3_14q22.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2297"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-5"; repStart "1"; ### MER4_14q22.3a ### chr14 rmsk gene 56431040 56437062 . + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0659"; model_cov "5367"; model_pct "81.3"; chr14 rmsk exon 56431040 56431481 3152 + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0659"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 56432030 56432136 416 + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0659"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr14 rmsk exon 56432299 56432314 934 + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0659"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-5385"; repStart "1194"; chr14 rmsk exon 56432621 56433143 1302 + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0659"; repClass "LTR"; repEnd "3235"; repFamily "ERV1"; repLeft "-3363"; repStart "2197"; chr14 rmsk exon 56434204 56437062 10729 + . gene_id "MER4_14q22.3a"; transcript_id "MER4_14q22.3a"; locus "MER4_14q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0659"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "-1585"; repStart "786"; ### MER4_14q22.3b ### chr14 rmsk gene 56449662 56450993 . + . gene_id "MER4_14q22.3b"; transcript_id "MER4_14q22.3b"; locus "MER4_14q22.3b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0660"; model_cov "2253"; model_pct "34.1"; chr14 rmsk exon 56449662 56450993 5415 + . gene_id "MER4_14q22.3b"; transcript_id "MER4_14q22.3b"; locus "MER4_14q22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0660"; repClass "LTR"; repEnd "4930"; repFamily "ERV1"; repLeft "-1668"; repStart "2677"; ### HML3_14q22.3a ### chr14 rmsk gene 57036358 57037024 . - . gene_id "HML3_14q22.3a"; transcript_id "HML3_14q22.3a"; locus "HML3_14q22.3a"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0188"; model_cov "691"; model_pct "11.5"; chr14 rmsk exon 57036358 57036436 619 - . gene_id "HML3_14q22.3a"; transcript_id "HML3_14q22.3a"; locus "HML3_14q22.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0188"; repClass "LTR"; repEnd "3801"; repFamily "ERVK"; repLeft "3723"; repStart "-2220"; chr14 rmsk exon 57036437 57037024 4671 - . gene_id "HML3_14q22.3a"; transcript_id "HML3_14q22.3a"; locus "HML3_14q22.3a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0188"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2185"; repStart "-3223"; ### HERVL_14q22.3a ### chr14 rmsk gene 57141671 57142623 . - . gene_id "HERVL_14q22.3a"; transcript_id "HERVL_14q22.3a"; locus "HERVL_14q22.3a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1093"; model_cov "996"; model_pct "17.6"; chr14 rmsk exon 57141671 57142623 1532 - . gene_id "HERVL_14q22.3a"; transcript_id "HERVL_14q22.3a"; locus "HERVL_14q22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1093"; repClass "LTR"; repEnd "4836"; repFamily "ERVL"; repLeft "3840"; repStart "-818"; ### ERV316A3_14q22.3b ### chr14 rmsk gene 57254977 57257035 . + . gene_id "ERV316A3_14q22.3b"; transcript_id "ERV316A3_14q22.3b"; locus "ERV316A3_14q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2300"; model_cov "1485"; model_pct "28.4"; chr14 rmsk exon 57254977 57255602 3303 + . gene_id "ERV316A3_14q22.3b"; transcript_id "ERV316A3_14q22.3b"; locus "ERV316A3_14q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2300"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "-778"; repStart "3737"; chr14 rmsk exon 57255855 57256596 3303 + . gene_id "ERV316A3_14q22.3b"; transcript_id "ERV316A3_14q22.3b"; locus "ERV316A3_14q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2300"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "4449"; chr14 rmsk exon 57256599 57257035 1277 + . gene_id "ERV316A3_14q22.3b"; transcript_id "ERV316A3_14q22.3b"; locus "ERV316A3_14q22.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2300"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_14q22.3b ### chr14 rmsk gene 57327104 57335555 . - . gene_id "HERVL_14q22.3b"; transcript_id "HERVL_14q22.3b"; locus "HERVL_14q22.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1094"; model_cov "5670"; model_pct "100.0"; chr14 rmsk exon 57327104 57327542 3425 - . gene_id "HERVL_14q22.3b"; transcript_id "HERVL_14q22.3b"; locus "HERVL_14q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1094"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 57327543 57332548 40556 - . gene_id "HERVL_14q22.3b"; transcript_id "HERVL_14q22.3b"; locus "HERVL_14q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1094"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "638"; repStart "0"; chr14 rmsk exon 57334482 57335135 4977 - . gene_id "HERVL_14q22.3b"; transcript_id "HERVL_14q22.3b"; locus "HERVL_14q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1094"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "1"; repStart "-4999"; chr14 rmsk exon 57335136 57335555 3220 - . gene_id "HERVL_14q22.3b"; transcript_id "HERVL_14q22.3b"; locus "HERVL_14q22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1094"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML3_14q22.3b ### chr14 rmsk gene 57365957 57368010 . + . gene_id "HML3_14q22.3b"; transcript_id "HML3_14q22.3b"; locus "HML3_14q22.3b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0189"; model_cov "1548"; model_pct "25.7"; chr14 rmsk exon 57365957 57366468 4046 + . gene_id "HML3_14q22.3b"; transcript_id "HML3_14q22.3b"; locus "HML3_14q22.3b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0189"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr14 rmsk exon 57366469 57367064 4561 + . gene_id "HML3_14q22.3b"; transcript_id "HML3_14q22.3b"; locus "HML3_14q22.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0189"; repClass "LTR"; repEnd "601"; repFamily "ERVK"; repLeft "-5420"; repStart "1"; chr14 rmsk exon 57367061 57368010 7316 + . gene_id "HML3_14q22.3b"; transcript_id "HML3_14q22.3b"; locus "HML3_14q22.3b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0189"; repClass "LTR"; repEnd "2220"; repFamily "ERVK"; repLeft "-3801"; repStart "1272"; ### ERVLE_14q22.3b ### chr14 rmsk gene 57528669 57529451 . - . gene_id "ERVLE_14q22.3b"; transcript_id "ERVLE_14q22.3b"; locus "ERVLE_14q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3053"; model_cov "735"; model_pct "13.0"; chr14 rmsk exon 57528669 57528947 787 - . gene_id "ERVLE_14q22.3b"; transcript_id "ERVLE_14q22.3b"; locus "ERVLE_14q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3053"; repClass "LTR"; repEnd "4910"; repFamily "ERVL"; repLeft "4637"; repStart "-757"; chr14 rmsk exon 57528982 57529451 1886 - . gene_id "ERVLE_14q22.3b"; transcript_id "ERVLE_14q22.3b"; locus "ERVLE_14q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3053"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "3"; repStart "-5202"; ### HERVL_14q23.1 ### chr14 rmsk gene 57720598 57727191 . + . gene_id "HERVL_14q23.1"; transcript_id "HERVL_14q23.1"; locus "HERVL_14q23.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1095"; model_cov "5652"; model_pct "100.0"; chr14 rmsk exon 57720598 57720979 2990 + . gene_id "HERVL_14q23.1"; transcript_id "HERVL_14q23.1"; locus "HERVL_14q23.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1095"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-71"; repStart "1"; chr14 rmsk exon 57721016 57721090 2990 + . gene_id "HERVL_14q23.1"; transcript_id "HERVL_14q23.1"; locus "HERVL_14q23.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1095"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "374"; chr14 rmsk exon 57721091 57726728 40078 + . gene_id "HERVL_14q23.1"; transcript_id "HERVL_14q23.1"; locus "HERVL_14q23.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1095"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr14 rmsk exon 57726730 57727191 3116 + . gene_id "HERVL_14q23.1"; transcript_id "HERVL_14q23.1"; locus "HERVL_14q23.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1095"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_14q23.1a ### chr14 rmsk gene 57816729 57818866 . + . gene_id "ERV316A3_14q23.1a"; transcript_id "ERV316A3_14q23.1a"; locus "ERV316A3_14q23.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2301"; model_cov "1315"; model_pct "25.2"; chr14 rmsk exon 57816729 57817014 743 + . gene_id "ERV316A3_14q23.1a"; transcript_id "ERV316A3_14q23.1a"; locus "ERV316A3_14q23.1a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2301"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "-2"; repStart "268"; chr14 rmsk exon 57817541 57818152 663 + . gene_id "ERV316A3_14q23.1a"; transcript_id "ERV316A3_14q23.1a"; locus "ERV316A3_14q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2301"; repClass "LTR"; repEnd "1017"; repFamily "ERVL"; repLeft "-4209"; repStart "367"; chr14 rmsk exon 57818203 57818866 691 + . gene_id "ERV316A3_14q23.1a"; transcript_id "ERV316A3_14q23.1a"; locus "ERV316A3_14q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2301"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "-86"; repStart "4475"; ### ERV316A3_14q23.1b ### chr14 rmsk gene 57975466 57977196 . + . gene_id "ERV316A3_14q23.1b"; transcript_id "ERV316A3_14q23.1b"; locus "ERV316A3_14q23.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2302"; model_cov "1805"; model_pct "34.5"; chr14 rmsk exon 57975466 57976271 858 + . gene_id "ERV316A3_14q23.1b"; transcript_id "ERV316A3_14q23.1b"; locus "ERV316A3_14q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2302"; repClass "LTR"; repEnd "1424"; repFamily "ERVL"; repLeft "-3802"; repStart "583"; chr14 rmsk exon 57976357 57977196 1235 + . gene_id "ERV316A3_14q23.1b"; transcript_id "ERV316A3_14q23.1b"; locus "ERV316A3_14q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2302"; repClass "LTR"; repEnd "3185"; repFamily "ERVL"; repLeft "-2041"; repStart "2221"; ### ERV316A3_14q23.1c ### chr14 rmsk gene 57977240 57979797 . + . gene_id "ERV316A3_14q23.1c"; transcript_id "ERV316A3_14q23.1c"; locus "ERV316A3_14q23.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2303"; model_cov "1738"; model_pct "33.3"; chr14 rmsk exon 57977240 57977403 509 + . gene_id "ERV316A3_14q23.1c"; transcript_id "ERV316A3_14q23.1c"; locus "ERV316A3_14q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2303"; repClass "LTR"; repEnd "2798"; repFamily "ERVL"; repLeft "-2428"; repStart "2629"; chr14 rmsk exon 57977717 57978087 1058 + . gene_id "ERV316A3_14q23.1c"; transcript_id "ERV316A3_14q23.1c"; locus "ERV316A3_14q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2303"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "-1426"; repStart "3415"; chr14 rmsk exon 57978117 57979259 1907 + . gene_id "ERV316A3_14q23.1c"; transcript_id "ERV316A3_14q23.1c"; locus "ERV316A3_14q23.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2303"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "-112"; repStart "3930"; chr14 rmsk exon 57979391 57979797 1253 + . gene_id "ERV316A3_14q23.1c"; transcript_id "ERV316A3_14q23.1c"; locus "ERV316A3_14q23.1c"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2303"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-122"; repStart "24"; ### HERVW_14q23.1 ### chr14 rmsk gene 58122281 58126144 . + . gene_id "HERVW_14q23.1"; transcript_id "HERVW_14q23.1"; locus "HERVW_14q23.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0255"; model_cov "3550"; model_pct "41.2"; chr14 rmsk exon 58122281 58125504 28031 + . gene_id "HERVW_14q23.1"; transcript_id "HERVW_14q23.1"; locus "HERVW_14q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0255"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2798"; chr14 rmsk exon 58125498 58125536 303 + . gene_id "HERVW_14q23.1"; transcript_id "HERVW_14q23.1"; locus "HERVW_14q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0255"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr14 rmsk exon 58125527 58125818 2403 + . gene_id "HERVW_14q23.1"; transcript_id "HERVW_14q23.1"; locus "HERVW_14q23.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0255"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr14 rmsk exon 58125819 58126144 2716 + . gene_id "HERVW_14q23.1"; transcript_id "HERVW_14q23.1"; locus "HERVW_14q23.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0255"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_14q23.1d ### chr14 rmsk gene 58990246 58993160 . + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2306"; model_cov "1188"; model_pct "22.7"; chr14 rmsk exon 58990246 58990645 1256 + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2306"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 58990649 58990805 1944 + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2306"; repClass "LTR"; repEnd "138"; repFamily "ERVL"; repLeft "-5088"; repStart "8"; chr14 rmsk exon 58991144 58991765 1944 + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2306"; repClass "LTR"; repEnd "811"; repFamily "ERVL"; repLeft "-4415"; repStart "139"; chr14 rmsk exon 58992382 58992776 952 + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2306"; repClass "LTR"; repEnd "1453"; repFamily "ERVL"; repLeft "-3773"; repStart "1067"; chr14 rmsk exon 58992781 58993160 1618 + . gene_id "ERV316A3_14q23.1d"; transcript_id "ERV316A3_14q23.1d"; locus "ERV316A3_14q23.1d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2306"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "84"; ### ERVL_14q23.1 ### chr14 rmsk gene 59220515 59224459 . - . gene_id "ERVL_14q23.1"; transcript_id "ERVL_14q23.1"; locus "ERVL_14q23.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0368"; model_cov "3474"; model_pct "60.3"; chr14 rmsk exon 59220515 59221027 2147 - . gene_id "ERVL_14q23.1"; transcript_id "ERVL_14q23.1"; locus "ERVL_14q23.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0368"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "7"; repStart "-2"; chr14 rmsk exon 59221028 59224459 18415 - . gene_id "ERVL_14q23.1"; transcript_id "ERVL_14q23.1"; locus "ERVL_14q23.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0368"; repClass "LTR"; repEnd "5747"; repFamily "ERVL"; repLeft "2273"; repStart "-10"; ### HERVH_14q23.1a ### chr14 rmsk gene 59445365 59449785 . + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1025"; model_cov "3994"; model_pct "51.8"; chr14 rmsk exon 59445365 59445703 2525 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-7288"; repStart "87"; chr14 rmsk exon 59445704 59447489 11811 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1254"; chr14 rmsk exon 59447476 59447623 950 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr14 rmsk exon 59447616 59448118 3463 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr14 rmsk exon 59448121 59448783 4577 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 59448785 59449001 1467 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 59449002 59449378 2424 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr14 rmsk exon 59449379 59449785 3024 + . gene_id "HERVH_14q23.1a"; transcript_id "HERVH_14q23.1a"; locus "HERVH_14q23.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1025"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP1_14q23.1 ### chr14 rmsk gene 59610524 59618634 . + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0165"; model_cov "6257"; model_pct "99.9"; chr14 rmsk exon 59610524 59611202 5268 + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0165"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 59611203 59613295 44156 + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0165"; repClass "LTR"; repEnd "2109"; repFamily "ERV1"; repLeft "-4154"; repStart "1"; chr14 rmsk exon 59613598 59615167 44156 + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0165"; repClass "LTR"; repEnd "3733"; repFamily "ERV1"; repLeft "-2530"; repStart "2110"; chr14 rmsk exon 59615479 59617992 44156 + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0165"; repClass "LTR"; repEnd "6260"; repFamily "ERV1"; repLeft "-3"; repStart "3734"; chr14 rmsk exon 59617995 59618634 5002 + . gene_id "HUERSP1_14q23.1"; transcript_id "HUERSP1_14q23.1"; locus "HUERSP1_14q23.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0165"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_14q23.1 ### chr14 rmsk gene 60095023 60096839 . - . gene_id "PRIMA4_14q23.1"; transcript_id "PRIMA4_14q23.1"; locus "PRIMA4_14q23.1"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0194"; model_cov "1298"; model_pct "15.7"; chr14 rmsk exon 60095023 60095601 4174 - . gene_id "PRIMA4_14q23.1"; transcript_id "PRIMA4_14q23.1"; locus "PRIMA4_14q23.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0194"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 60095602 60096839 8253 - . gene_id "PRIMA4_14q23.1"; transcript_id "PRIMA4_14q23.1"; locus "PRIMA4_14q23.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0194"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "6972"; repStart "0"; ### LTR19_14q23.1 ### chr14 rmsk gene 60096829 60098422 . + . gene_id "LTR19_14q23.1"; transcript_id "LTR19_14q23.1"; locus "LTR19_14q23.1"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0045"; model_cov "1180"; model_pct "21.1"; chr14 rmsk exon 60096829 60097382 4263 + . gene_id "LTR19_14q23.1"; transcript_id "LTR19_14q23.1"; locus "LTR19_14q23.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0045"; repClass "LTR"; repEnd "4827"; repFamily "ERV1"; repLeft "-759"; repStart "4264"; chr14 rmsk exon 60097374 60097973 4525 + . gene_id "LTR19_14q23.1"; transcript_id "LTR19_14q23.1"; locus "LTR19_14q23.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0045"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "4969"; chr14 rmsk exon 60097974 60098422 2706 + . gene_id "LTR19_14q23.1"; transcript_id "LTR19_14q23.1"; locus "LTR19_14q23.1"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0045"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-14"; repStart "1"; ### ERV316A3_14q23.1e ### chr14 rmsk gene 60609914 60614330 . - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2308"; model_cov "1525"; model_pct "29.2"; chr14 rmsk exon 60609914 60610159 755 - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2308"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "66"; repStart "0"; chr14 rmsk exon 60610206 60610912 1957 - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2308"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "2609"; repStart "-1903"; chr14 rmsk exon 60613292 60613409 1063 - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2308"; repClass "LTR"; repEnd "2607"; repFamily "ERVL"; repLeft "2496"; repStart "-2619"; chr14 rmsk exon 60613410 60614087 742 - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2308"; repClass "LTR"; repEnd "701"; repFamily "ERVL"; repLeft "1"; repStart "-4525"; chr14 rmsk exon 60614088 60614330 1036 - . gene_id "ERV316A3_14q23.1e"; transcript_id "ERV316A3_14q23.1e"; locus "ERV316A3_14q23.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2308"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "200"; repStart "0"; ### ERVLE_14q23.1 ### chr14 rmsk gene 60778446 60779505 . + . gene_id "ERVLE_14q23.1"; transcript_id "ERVLE_14q23.1"; locus "ERVLE_14q23.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3056"; model_cov "1060"; model_pct "18.7"; chr14 rmsk exon 60778446 60779505 1632 + . gene_id "ERVLE_14q23.1"; transcript_id "ERVLE_14q23.1"; locus "ERVLE_14q23.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3056"; repClass "LTR"; repEnd "5617"; repFamily "ERVL"; repLeft "-50"; repStart "4557"; ### HERVIP10FH_14q23.1 ### chr14 rmsk gene 61114842 61121155 . - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0141"; model_cov "6233"; model_pct "100.0"; chr14 rmsk exon 61114842 61115794 6256 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "4143"; repStart "0"; chr14 rmsk exon 61115762 61116362 3612 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "3350"; repFamily "ERV1"; repLeft "2747"; repStart "-1752"; chr14 rmsk exon 61116359 61116468 752 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "2275"; repStart "-2734"; chr14 rmsk exon 61116448 61116783 2008 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "2185"; repFamily "ERV1"; repLeft "1850"; repStart "-2917"; chr14 rmsk exon 61116764 61120044 20096 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "2155"; repFamily "ERV1"; repLeft "-1000"; repStart "-2947"; chr14 rmsk exon 61120017 61121155 3475 - . gene_id "HERVIP10FH_14q23.1"; transcript_id "HERVIP10FH_14q23.1"; locus "HERVIP10FH_14q23.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0141"; repClass "LTR"; repEnd "-1622"; repFamily "ERV1"; repLeft "-2710"; repStart "-6724"; ### HERVH_14q23.1b ### chr14 rmsk gene 61133252 61139160 . - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1026"; model_cov "5113"; model_pct "66.3"; chr14 rmsk exon 61133252 61133642 2608 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "-13"; chr14 rmsk exon 61133643 61134020 2351 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr14 rmsk exon 61134021 61134236 1402 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 61134238 61134900 4571 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 61134903 61135757 6484 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr14 rmsk exon 61135744 61138754 21314 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr14 rmsk exon 61138757 61139160 2492 - . gene_id "HERVH_14q23.1b"; transcript_id "HERVH_14q23.1b"; locus "HERVH_14q23.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1026"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_14q23.2a ### chr14 rmsk gene 61675071 61676903 . - . gene_id "ERV316A3_14q23.2a"; transcript_id "ERV316A3_14q23.2a"; locus "ERV316A3_14q23.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2309"; model_cov "1156"; model_pct "22.1"; chr14 rmsk exon 61675071 61675488 968 - . gene_id "ERV316A3_14q23.2a"; transcript_id "ERV316A3_14q23.2a"; locus "ERV316A3_14q23.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2309"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "5"; repStart "0"; chr14 rmsk exon 61675504 61676049 1997 - . gene_id "ERV316A3_14q23.2a"; transcript_id "ERV316A3_14q23.2a"; locus "ERV316A3_14q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2309"; repClass "LTR"; repEnd "5214"; repFamily "ERVL"; repLeft "4664"; repStart "-12"; chr14 rmsk exon 61676272 61676679 1997 - . gene_id "ERV316A3_14q23.2a"; transcript_id "ERV316A3_14q23.2a"; locus "ERV316A3_14q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2309"; repClass "LTR"; repEnd "4663"; repFamily "ERVL"; repLeft "4277"; repStart "-563"; chr14 rmsk exon 61676685 61676903 471 - . gene_id "ERV316A3_14q23.2a"; transcript_id "ERV316A3_14q23.2a"; locus "ERV316A3_14q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2309"; repClass "LTR"; repEnd "2979"; repFamily "ERVL"; repLeft "2759"; repStart "-2247"; ### ERV316A3_14q23.2b ### chr14 rmsk gene 62424578 62426920 . - . gene_id "ERV316A3_14q23.2b"; transcript_id "ERV316A3_14q23.2b"; locus "ERV316A3_14q23.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2311"; model_cov "2153"; model_pct "41.2"; chr14 rmsk exon 62424578 62425598 2828 - . gene_id "ERV316A3_14q23.2b"; transcript_id "ERV316A3_14q23.2b"; locus "ERV316A3_14q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2311"; repClass "LTR"; repEnd "4252"; repFamily "ERVL"; repLeft "3057"; repStart "-974"; chr14 rmsk exon 62425687 62426461 2020 - . gene_id "ERV316A3_14q23.2b"; transcript_id "ERV316A3_14q23.2b"; locus "ERV316A3_14q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2311"; repClass "LTR"; repEnd "1214"; repFamily "ERVL"; repLeft "382"; repStart "-4012"; chr14 rmsk exon 62426635 62426760 303 - . gene_id "ERV316A3_14q23.2b"; transcript_id "ERV316A3_14q23.2b"; locus "ERV316A3_14q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2311"; repClass "LTR"; repEnd "221"; repFamily "ERVL"; repLeft "95"; repStart "-5005"; chr14 rmsk exon 62426813 62426920 444 - . gene_id "ERV316A3_14q23.2b"; transcript_id "ERV316A3_14q23.2b"; locus "ERV316A3_14q23.2b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2311"; repClass "LTR"; repEnd "112"; repFamily "ERVL"; repLeft "5"; repStart "-351"; ### ERVLB4_14q23.2 ### chr14 rmsk gene 62628255 62630706 . - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1449"; model_cov "1956"; model_pct "34.2"; chr14 rmsk exon 62628255 62628455 689 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "4855"; repFamily "ERVL"; repLeft "4657"; repStart "-859"; chr14 rmsk exon 62628444 62628857 776 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "3533"; repFamily "ERVL"; repLeft "3022"; repStart "-2181"; chr14 rmsk exon 62629013 62629241 776 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "3021"; repFamily "ERVL"; repLeft "2795"; repStart "-2693"; chr14 rmsk exon 62629329 62629740 1620 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "2168"; repStart "-3118"; chr14 rmsk exon 62630150 62630308 1620 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "2009"; repStart "-3547"; chr14 rmsk exon 62630307 62630706 688 - . gene_id "ERVLB4_14q23.2"; transcript_id "ERVLB4_14q23.2"; locus "ERVLB4_14q23.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1449"; repClass "LTR"; repEnd "991"; repFamily "ERVL"; repLeft "556"; repStart "-4723"; ### PRIMA41_14q23.2 ### chr14 rmsk gene 62748037 62752293 . - . gene_id "PRIMA41_14q23.2"; transcript_id "PRIMA41_14q23.2"; locus "PRIMA41_14q23.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0110"; model_cov "3762"; model_pct "48.5"; chr14 rmsk exon 62748037 62748554 3970 - . gene_id "PRIMA41_14q23.2"; transcript_id "PRIMA41_14q23.2"; locus "PRIMA41_14q23.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0110"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr14 rmsk exon 62748555 62749130 3981 - . gene_id "PRIMA41_14q23.2"; transcript_id "PRIMA41_14q23.2"; locus "PRIMA41_14q23.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0110"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7191"; repStart "0"; chr14 rmsk exon 62749109 62751122 15050 - . gene_id "PRIMA41_14q23.2"; transcript_id "PRIMA41_14q23.2"; locus "PRIMA41_14q23.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0110"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "4394"; repStart "-1361"; chr14 rmsk exon 62751118 62752293 8551 - . gene_id "PRIMA41_14q23.2"; transcript_id "PRIMA41_14q23.2"; locus "PRIMA41_14q23.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0110"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "1859"; repStart "-4701"; ### PABLA_14q23.2 ### chr14 rmsk gene 62806506 62810378 . + . gene_id "PABLA_14q23.2"; transcript_id "PABLA_14q23.2"; locus "PABLA_14q23.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0127"; model_cov "4460"; model_pct "88.9"; chr14 rmsk exon 62806506 62807194 4719 + . gene_id "PABLA_14q23.2"; transcript_id "PABLA_14q23.2"; locus "PABLA_14q23.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0127"; repClass "LTR"; repEnd "-226"; repFamily "ERV1"; repLeft "-5241"; repStart "-928"; chr14 rmsk exon 62807239 62810378 13815 + . gene_id "PABLA_14q23.2"; transcript_id "PABLA_14q23.2"; locus "PABLA_14q23.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0127"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-3"; repStart "1254"; ### HERVL_14q23.2 ### chr14 rmsk gene 62857404 62860339 . - . gene_id "HERVL_14q23.2"; transcript_id "HERVL_14q23.2"; locus "HERVL_14q23.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1096"; model_cov "2514"; model_pct "44.5"; chr14 rmsk exon 62857404 62857868 3202 - . gene_id "HERVL_14q23.2"; transcript_id "HERVL_14q23.2"; locus "HERVL_14q23.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1096"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 62857869 62860339 19667 - . gene_id "HERVL_14q23.2"; transcript_id "HERVL_14q23.2"; locus "HERVL_14q23.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1096"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3140"; repStart "0"; ### ERVLE_14q23.2 ### chr14 rmsk gene 64069473 64069940 . - . gene_id "ERVLE_14q23.2"; transcript_id "ERVLE_14q23.2"; locus "ERVLE_14q23.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3058"; model_cov "590"; model_pct "10.4"; chr14 rmsk exon 64069473 64069940 794 - . gene_id "ERVLE_14q23.2"; transcript_id "ERVLE_14q23.2"; locus "ERVLE_14q23.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3058"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "2570"; repStart "-2507"; ### ERVLB4_14q23.3 ### chr14 rmsk gene 65247466 65253447 . - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1451"; model_cov "3249"; model_pct "56.9"; chr14 rmsk exon 65247466 65247512 1333 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "474"; repStart "-2"; chr14 rmsk exon 65247569 65247922 1333 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "71"; repStart "-47"; chr14 rmsk exon 65247969 65248037 1333 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "70"; repFamily "ERVL"; repLeft "2"; repStart "-450"; chr14 rmsk exon 65248053 65248300 1576 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5456"; repStart "-9"; chr14 rmsk exon 65248536 65248663 519 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "5430"; repFamily "ERVL"; repLeft "5326"; repStart "-284"; chr14 rmsk exon 65249283 65250562 10223 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "5338"; repFamily "ERVL"; repLeft "4024"; repStart "-376"; chr14 rmsk exon 65251194 65251457 10223 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "4023"; repFamily "ERVL"; repLeft "3754"; repStart "-1691"; chr14 rmsk exon 65252133 65252998 6284 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "3725"; repFamily "ERVL"; repLeft "2847"; repStart "-1989"; chr14 rmsk exon 65253029 65253447 2879 - . gene_id "ERVLB4_14q23.3"; transcript_id "ERVLB4_14q23.3"; locus "ERVLB4_14q23.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1451"; repClass "LTR"; repEnd "2479"; repFamily "ERVL"; repLeft "2044"; repStart "-3235"; ### ERVL_14q23.3 ### chr14 rmsk gene 66368875 66373018 . + . gene_id "ERVL_14q23.3"; transcript_id "ERVL_14q23.3"; locus "ERVL_14q23.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0371"; model_cov "2947"; model_pct "51.2"; chr14 rmsk exon 66368875 66371147 17179 + . gene_id "ERVL_14q23.3"; transcript_id "ERVL_14q23.3"; locus "ERVL_14q23.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0371"; repClass "LTR"; repEnd "5102"; repFamily "ERVL"; repLeft "-655"; repStart "2809"; chr14 rmsk exon 66371849 66372508 17179 + . gene_id "ERVL_14q23.3"; transcript_id "ERVL_14q23.3"; locus "ERVL_14q23.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0371"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5103"; chr14 rmsk exon 66372523 66373018 1747 + . gene_id "ERVL_14q23.3"; transcript_id "ERVL_14q23.3"; locus "ERVL_14q23.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0371"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "9"; ### MER4_14q23.3 ### chr14 rmsk gene 66465513 66472030 . + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0662"; model_cov "6298"; model_pct "95.5"; chr14 rmsk exon 66465513 66465960 3287 + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0662"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 66465964 66466571 2616 + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0662"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr14 rmsk exon 66466540 66468242 8550 + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0662"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "741"; chr14 rmsk exon 66468483 66471577 15692 + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0662"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "2737"; chr14 rmsk exon 66471586 66472030 3204 + . gene_id "MER4_14q23.3"; transcript_id "MER4_14q23.3"; locus "MER4_14q23.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0662"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVL40_14q23.3 ### chr14 rmsk gene 66623740 66625040 . + . gene_id "HERVL40_14q23.3"; transcript_id "HERVL40_14q23.3"; locus "HERVL40_14q23.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0378"; model_cov "620"; model_pct "11.2"; chr14 rmsk exon 66623740 66623859 422 + . gene_id "HERVL40_14q23.3"; transcript_id "HERVL40_14q23.3"; locus "HERVL40_14q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0378"; repClass "LTR"; repEnd "1401"; repFamily "ERVL"; repLeft "-4129"; repStart "1278"; chr14 rmsk exon 66624353 66624445 253 + . gene_id "HERVL40_14q23.3"; transcript_id "HERVL40_14q23.3"; locus "HERVL40_14q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0378"; repClass "LTR"; repEnd "1485"; repFamily "ERVL"; repLeft "-4045"; repStart "1391"; chr14 rmsk exon 66624470 66624618 997 + . gene_id "HERVL40_14q23.3"; transcript_id "HERVL40_14q23.3"; locus "HERVL40_14q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0378"; repClass "LTR"; repEnd "3173"; repFamily "ERVL"; repLeft "-2357"; repStart "3023"; chr14 rmsk exon 66624813 66625040 997 + . gene_id "HERVL40_14q23.3"; transcript_id "HERVL40_14q23.3"; locus "HERVL40_14q23.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0378"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "-2103"; repStart "3174"; ### LTR25_14q23.3 ### chr14 rmsk gene 66758339 66759503 . - . gene_id "LTR25_14q23.3"; transcript_id "LTR25_14q23.3"; locus "LTR25_14q23.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0103"; model_cov "1188"; model_pct "16.5"; chr14 rmsk exon 66758339 66759503 6452 - . gene_id "LTR25_14q23.3"; transcript_id "LTR25_14q23.3"; locus "LTR25_14q23.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0103"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5999"; repStart "-1"; ### PABLA_14q23.3 ### chr14 rmsk gene 66788315 66789385 . - . gene_id "PABLA_14q23.3"; transcript_id "PABLA_14q23.3"; locus "PABLA_14q23.3"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0128"; model_cov "778"; model_pct "15.5"; chr14 rmsk exon 66788315 66788647 3364 - . gene_id "PABLA_14q23.3"; transcript_id "PABLA_14q23.3"; locus "PABLA_14q23.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0128"; repClass "LTR"; repEnd "3582"; repFamily "ERV1"; repLeft "3241"; repStart "-1433"; chr14 rmsk exon 66788942 66789385 3364 - . gene_id "PABLA_14q23.3"; transcript_id "PABLA_14q23.3"; locus "PABLA_14q23.3"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0128"; repClass "LTR"; repEnd "3240"; repFamily "ERV1"; repLeft "2803"; repStart "-1775"; ### MER61_14q23.3 ### chr14 rmsk gene 66939377 66945419 . - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0319"; model_cov "5096"; model_pct "97.7"; chr14 rmsk exon 66939377 66939698 1316 - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0319"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr14 rmsk exon 66939699 66942020 27856 - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0319"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "2885"; repStart "-1"; chr14 rmsk exon 66942312 66944230 27856 - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0319"; repClass "LTR"; repEnd "2884"; repFamily "ERV1"; repLeft "959"; repStart "-2333"; chr14 rmsk exon 66944231 66945086 3567 - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0319"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "1"; repStart "-4376"; chr14 rmsk exon 66945098 66945419 1382 - . gene_id "MER61_14q23.3"; transcript_id "MER61_14q23.3"; locus "MER61_14q23.3"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0319"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### LTR57_14q24.1 ### chr14 rmsk gene 67702280 67703596 . - . gene_id "LTR57_14q24.1"; transcript_id "LTR57_14q24.1"; locus "LTR57_14q24.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0145"; model_cov "1086"; model_pct "20.3"; chr14 rmsk exon 67702280 67702809 4861 - . gene_id "LTR57_14q24.1"; transcript_id "LTR57_14q24.1"; locus "LTR57_14q24.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0145"; repClass "LTR"; repEnd "1399"; repFamily "ERVL"; repLeft "873"; repStart "-3944"; chr14 rmsk exon 67703120 67703596 4861 - . gene_id "LTR57_14q24.1"; transcript_id "LTR57_14q24.1"; locus "LTR57_14q24.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0145"; repClass "LTR"; repEnd "872"; repFamily "ERVL"; repLeft "312"; repStart "-4471"; ### MER4_14q24.1a ### chr14 rmsk gene 67706311 67710942 . - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0663"; model_cov "4012"; model_pct "60.8"; chr14 rmsk exon 67706311 67706757 3012 - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0663"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 67706777 67707432 4310 - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0663"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "5906"; repStart "-14"; chr14 rmsk exon 67707646 67708794 13163 - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0663"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "4753"; repStart "-686"; chr14 rmsk exon 67709091 67709835 13163 - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0663"; repClass "LTR"; repEnd "4752"; repFamily "ERV1"; repLeft "4002"; repStart "-1846"; chr14 rmsk exon 67710294 67710942 13163 - . gene_id "MER4_14q24.1a"; transcript_id "MER4_14q24.1a"; locus "MER4_14q24.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0663"; repClass "LTR"; repEnd "4001"; repFamily "ERV1"; repLeft "2576"; repStart "-2597"; ### MER4_14q24.1b ### chr14 rmsk gene 67711166 67714076 . - . gene_id "MER4_14q24.1b"; transcript_id "MER4_14q24.1b"; locus "MER4_14q24.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0664"; model_cov "2951"; model_pct "44.7"; chr14 rmsk exon 67711166 67711927 13163 - . gene_id "MER4_14q24.1b"; transcript_id "MER4_14q24.1b"; locus "MER4_14q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0664"; repClass "LTR"; repEnd "4001"; repFamily "ERV1"; repLeft "2322"; repStart "-2597"; chr14 rmsk exon 67712220 67713241 12590 - . gene_id "MER4_14q24.1b"; transcript_id "MER4_14q24.1b"; locus "MER4_14q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0664"; repClass "LTR"; repEnd "1274"; repFamily "ERV1"; repLeft "434"; repStart "-5324"; chr14 rmsk exon 67713281 67713626 2870 - . gene_id "MER4_14q24.1b"; transcript_id "MER4_14q24.1b"; locus "MER4_14q24.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0664"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "1"; repStart "-6165"; chr14 rmsk exon 67713630 67714076 3240 - . gene_id "MER4_14q24.1b"; transcript_id "MER4_14q24.1b"; locus "MER4_14q24.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0664"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER34B_14q24.1 ### chr14 rmsk gene 68480483 68481099 . + . gene_id "MER34B_14q24.1"; transcript_id "MER34B_14q24.1"; locus "MER34B_14q24.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0234"; model_cov "618"; model_pct "11.5"; chr14 rmsk exon 68480483 68481099 1906 + . gene_id "MER34B_14q24.1"; transcript_id "MER34B_14q24.1"; locus "MER34B_14q24.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0234"; repClass "LTR"; repEnd "659"; repFamily "ERV1"; repLeft "-4697"; repStart "41"; ### ERVLE_14q24.1 ### chr14 rmsk gene 69174544 69178774 . - . gene_id "ERVLE_14q24.1"; transcript_id "ERVLE_14q24.1"; locus "ERVLE_14q24.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3059"; model_cov "1650"; model_pct "29.1"; chr14 rmsk exon 69174544 69175262 2439 - . gene_id "ERVLE_14q24.1"; transcript_id "ERVLE_14q24.1"; locus "ERVLE_14q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3059"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "4479"; repStart "-468"; chr14 rmsk exon 69176716 69177271 1441 - . gene_id "ERVLE_14q24.1"; transcript_id "ERVLE_14q24.1"; locus "ERVLE_14q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3059"; repClass "LTR"; repEnd "1429"; repFamily "ERVL"; repLeft "872"; repStart "-4238"; chr14 rmsk exon 69178094 69178405 811 - . gene_id "ERVLE_14q24.1"; transcript_id "ERVLE_14q24.1"; locus "ERVLE_14q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3059"; repClass "LTR"; repEnd "660"; repFamily "ERVL"; repLeft "351"; repStart "-5007"; chr14 rmsk exon 69178714 69178774 811 - . gene_id "ERVLE_14q24.1"; transcript_id "ERVLE_14q24.1"; locus "ERVLE_14q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3059"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "286"; repStart "-5317"; ### MER4_14q24.1c ### chr14 rmsk gene 69739976 69744479 . - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0665"; model_cov "3353"; model_pct "50.8"; chr14 rmsk exon 69739976 69740410 2277 - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0665"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr14 rmsk exon 69740419 69742424 16562 - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0665"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4512"; repStart "-2"; chr14 rmsk exon 69742739 69743256 16562 - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0665"; repClass "LTR"; repEnd "4511"; repFamily "ERV1"; repLeft "3970"; repStart "-2087"; chr14 rmsk exon 69743552 69743839 16562 - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0665"; repClass "LTR"; repEnd "3969"; repFamily "ERV1"; repLeft "3879"; repStart "-2629"; chr14 rmsk exon 69744149 69744479 9595 - . gene_id "MER4_14q24.1c"; transcript_id "MER4_14q24.1c"; locus "MER4_14q24.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0665"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1857"; repStart "-4103"; ### MER4_14q24.1d ### chr14 rmsk gene 69745226 69747765 . - . gene_id "MER4_14q24.1d"; transcript_id "MER4_14q24.1d"; locus "MER4_14q24.1d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0667"; model_cov "758"; model_pct "11.5"; chr14 rmsk exon 69745226 69745502 9595 - . gene_id "MER4_14q24.1d"; transcript_id "MER4_14q24.1d"; locus "MER4_14q24.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0667"; repClass "LTR"; repEnd "3021"; repFamily "ERV1"; repLeft "2752"; repStart "-3577"; chr14 rmsk exon 69747251 69747730 3022 - . gene_id "MER4_14q24.1d"; transcript_id "MER4_14q24.1d"; locus "MER4_14q24.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0667"; repClass "LTR"; repEnd "490"; repFamily "ERV1"; repLeft "1"; repStart "-6108"; chr14 rmsk exon 69747734 69747765 270 - . gene_id "MER4_14q24.1d"; transcript_id "MER4_14q24.1d"; locus "MER4_14q24.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0667"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "441"; repStart "0"; ### MER4B_14q24.1 ### chr14 rmsk gene 69745777 69747230 . - . gene_id "MER4B_14q24.1"; transcript_id "MER4B_14q24.1"; locus "MER4B_14q24.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0367"; model_cov "1116"; model_pct "16.5"; chr14 rmsk exon 69745777 69745965 3388 - . gene_id "MER4B_14q24.1"; transcript_id "MER4B_14q24.1"; locus "MER4B_14q24.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0367"; repClass "LTR"; repEnd "2147"; repFamily "ERV1"; repLeft "1980"; repStart "-4611"; chr14 rmsk exon 69746049 69746603 5224 - . gene_id "MER4B_14q24.1"; transcript_id "MER4B_14q24.1"; locus "MER4B_14q24.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0367"; repClass "LTR"; repEnd "1144"; repFamily "ERV1"; repLeft "526"; repStart "-5614"; chr14 rmsk exon 69746896 69747230 5224 - . gene_id "MER4B_14q24.1"; transcript_id "MER4B_14q24.1"; locus "MER4B_14q24.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0367"; repClass "LTR"; repEnd "525"; repFamily "ERV1"; repLeft "194"; repStart "-6233"; ### HML6_14q24.2 ### chr14 rmsk gene 69811463 69816023 . + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0071"; model_cov "3756"; model_pct "52.2"; chr14 rmsk exon 69811463 69811900 3349 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "-18"; repStart "4"; chr14 rmsk exon 69811901 69814583 18724 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "2757"; repFamily "ERVK"; repLeft "-4445"; repStart "23"; chr14 rmsk exon 69814584 69814767 1320 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "-2936"; repStart "4089"; chr14 rmsk exon 69814767 69815504 5048 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "5392"; repFamily "ERVK"; repLeft "-1810"; repStart "4644"; chr14 rmsk exon 69815501 69815598 656 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "7105"; chr14 rmsk exon 69815602 69816023 3003 + . gene_id "HML6_14q24.2"; transcript_id "HML6_14q24.2"; locus "HML6_14q24.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0071"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "-34"; repStart "4"; ### HERVL_14q24.2a ### chr14 rmsk gene 69821881 69827821 . - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1097"; model_cov "5011"; model_pct "88.6"; chr14 rmsk exon 69821881 69822313 3058 - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1097"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 69822314 69822971 5315 - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1097"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4996"; repStart "0"; chr14 rmsk exon 69822976 69827310 35321 - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1097"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "1"; repStart "-1300"; chr14 rmsk exon 69827311 69827388 390 - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1097"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr14 rmsk exon 69827435 69827821 2698 - . gene_id "HERVL_14q24.2a"; transcript_id "HERVL_14q24.2a"; locus "HERVL_14q24.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1097"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERVLE_14q24.2 ### chr14 rmsk gene 70036555 70038176 . + . gene_id "ERVLE_14q24.2"; transcript_id "ERVLE_14q24.2"; locus "ERVLE_14q24.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3060"; model_cov "1705"; model_pct "30.1"; chr14 rmsk exon 70036555 70036991 1190 + . gene_id "ERVLE_14q24.2"; transcript_id "ERVLE_14q24.2"; locus "ERVLE_14q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3060"; repClass "LTR"; repEnd "3738"; repFamily "ERVL"; repLeft "-1929"; repStart "3288"; chr14 rmsk exon 70037056 70038176 1750 + . gene_id "ERVLE_14q24.2"; transcript_id "ERVLE_14q24.2"; locus "ERVLE_14q24.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3060"; repClass "LTR"; repEnd "5091"; repFamily "ERVL"; repLeft "-576"; repStart "3836"; ### ERV316A3_14q24.2a ### chr14 rmsk gene 70236643 70237658 . - . gene_id "ERV316A3_14q24.2a"; transcript_id "ERV316A3_14q24.2a"; locus "ERV316A3_14q24.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2312"; model_cov "996"; model_pct "19.1"; chr14 rmsk exon 70236643 70237658 2770 - . gene_id "ERV316A3_14q24.2a"; transcript_id "ERV316A3_14q24.2a"; locus "ERV316A3_14q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2312"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "3908"; repStart "-322"; ### ERV316A3_14q24.2b ### chr14 rmsk gene 70273216 70275032 . - . gene_id "ERV316A3_14q24.2b"; transcript_id "ERV316A3_14q24.2b"; locus "ERV316A3_14q24.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2313"; model_cov "1219"; model_pct "23.3"; chr14 rmsk exon 70273216 70273828 1384 - . gene_id "ERV316A3_14q24.2b"; transcript_id "ERV316A3_14q24.2b"; locus "ERV316A3_14q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2313"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "4486"; repStart "-111"; chr14 rmsk exon 70274097 70274201 452 - . gene_id "ERV316A3_14q24.2b"; transcript_id "ERV316A3_14q24.2b"; locus "ERV316A3_14q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2313"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4371"; repStart "-751"; chr14 rmsk exon 70274283 70274771 1359 - . gene_id "ERV316A3_14q24.2b"; transcript_id "ERV316A3_14q24.2b"; locus "ERV316A3_14q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2313"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "3864"; repStart "-876"; chr14 rmsk exon 70274873 70275032 533 - . gene_id "ERV316A3_14q24.2b"; transcript_id "ERV316A3_14q24.2b"; locus "ERV316A3_14q24.2b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2313"; repClass "LTR"; repEnd "156"; repFamily "ERVL"; repLeft "1"; repStart "-300"; ### MER4_14q24.2a ### chr14 rmsk gene 70292312 70293484 . + . gene_id "MER4_14q24.2a"; transcript_id "MER4_14q24.2a"; locus "MER4_14q24.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0668"; model_cov "1049"; model_pct "15.9"; chr14 rmsk exon 70292312 70292355 347 + . gene_id "MER4_14q24.2a"; transcript_id "MER4_14q24.2a"; locus "MER4_14q24.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0668"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "-427"; repStart "1"; chr14 rmsk exon 70292364 70293163 2580 + . gene_id "MER4_14q24.2a"; transcript_id "MER4_14q24.2a"; locus "MER4_14q24.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0668"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "-5486"; repStart "258"; chr14 rmsk exon 70293198 70293474 2580 + . gene_id "MER4_14q24.2a"; transcript_id "MER4_14q24.2a"; locus "MER4_14q24.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0668"; repClass "LTR"; repEnd "1273"; repFamily "ERV1"; repLeft "-5325"; repStart "1113"; chr14 rmsk exon 70293449 70293484 290 + . gene_id "MER4_14q24.2a"; transcript_id "MER4_14q24.2a"; locus "MER4_14q24.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0668"; repClass "LTR"; repEnd "2481"; repFamily "ERV1"; repLeft "-4117"; repStart "2446"; ### HERVH_14q24.2a ### chr14 rmsk gene 70293487 70301929 . - . gene_id "HERVH_14q24.2a"; transcript_id "HERVH_14q24.2a"; locus "HERVH_14q24.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1027"; model_cov "7712"; model_pct "100.0"; chr14 rmsk exon 70293487 70293881 2783 - . gene_id "HERVH_14q24.2a"; transcript_id "HERVH_14q24.2a"; locus "HERVH_14q24.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1027"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 70293882 70301536 29823 - . gene_id "HERVH_14q24.2a"; transcript_id "HERVH_14q24.2a"; locus "HERVH_14q24.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1027"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 70301539 70301929 2751 - . gene_id "HERVH_14q24.2a"; transcript_id "HERVH_14q24.2a"; locus "HERVH_14q24.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1027"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_14q24.2b ### chr14 rmsk gene 70301930 70304747 . + . gene_id "MER4_14q24.2b"; transcript_id "MER4_14q24.2b"; locus "MER4_14q24.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0669"; model_cov "1948"; model_pct "29.5"; chr14 rmsk exon 70301930 70302673 4934 + . gene_id "MER4_14q24.2b"; transcript_id "MER4_14q24.2b"; locus "MER4_14q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0669"; repClass "LTR"; repEnd "2493"; repFamily "ERV1"; repLeft "-4105"; repStart "1714"; chr14 rmsk exon 70302901 70303278 2248 + . gene_id "MER4_14q24.2b"; transcript_id "MER4_14q24.2b"; locus "MER4_14q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0669"; repClass "LTR"; repEnd "3133"; repFamily "ERV1"; repLeft "-3465"; repStart "2737"; chr14 rmsk exon 70303989 70304501 2297 + . gene_id "MER4_14q24.2b"; transcript_id "MER4_14q24.2b"; locus "MER4_14q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0669"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3158"; chr14 rmsk exon 70304500 70304747 1431 + . gene_id "MER4_14q24.2b"; transcript_id "MER4_14q24.2b"; locus "MER4_14q24.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0669"; repClass "LTR"; repEnd "4086"; repFamily "ERV1"; repLeft "-2512"; repStart "3836"; ### MER4_14q24.2c ### chr14 rmsk gene 70311202 70314961 . + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0670"; model_cov "2383"; model_pct "36.1"; chr14 rmsk exon 70311202 70311456 1573 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0670"; repClass "LTR"; repEnd "4353"; repFamily "ERV1"; repLeft "-2245"; repStart "4078"; chr14 rmsk exon 70311457 70311677 13084 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0670"; repClass "LTR"; repEnd "4673"; repFamily "ERV1"; repLeft "-1925"; repStart "4481"; chr14 rmsk exon 70311966 70312693 13084 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0670"; repClass "LTR"; repEnd "5467"; repFamily "ERV1"; repLeft "-1131"; repStart "4674"; chr14 rmsk exon 70312997 70313570 13084 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0670"; repClass "LTR"; repEnd "6054"; repFamily "ERV1"; repLeft "-544"; repStart "5468"; chr14 rmsk exon 70313939 70314476 13084 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0670"; repClass "LTR"; repEnd "6592"; repFamily "ERV1"; repLeft "-6"; repStart "6055"; chr14 rmsk exon 70314491 70314961 3867 + . gene_id "MER4_14q24.2c"; transcript_id "MER4_14q24.2c"; locus "MER4_14q24.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0670"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVH48_14q24.2 ### chr14 rmsk gene 70344652 70350485 . + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0043"; model_cov "5531"; model_pct "83.1"; chr14 rmsk exon 70344652 70345038 2824 + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0043"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 70345039 70346142 6595 + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0043"; repClass "LTR"; repEnd "1192"; repFamily "ERV1"; repLeft "-5462"; repStart "1"; chr14 rmsk exon 70346131 70349924 13299 + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0043"; repClass "LTR"; repEnd "5666"; repFamily "ERV1"; repLeft "-988"; repStart "1508"; chr14 rmsk exon 70349913 70350094 1385 + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0043"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "6472"; chr14 rmsk exon 70350095 70350485 2736 + . gene_id "HERVH48_14q24.2"; transcript_id "HERVH48_14q24.2"; locus "HERVH48_14q24.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0043"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_14q24.2 ### chr14 rmsk gene 70399662 70400440 . - . gene_id "MER61_14q24.2"; transcript_id "MER61_14q24.2"; locus "MER61_14q24.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0320"; model_cov "604"; model_pct "11.6"; chr14 rmsk exon 70399662 70399926 856 - . gene_id "MER61_14q24.2"; transcript_id "MER61_14q24.2"; locus "MER61_14q24.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0320"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5018"; repStart "0"; chr14 rmsk exon 70399909 70399977 431 - . gene_id "MER61_14q24.2"; transcript_id "MER61_14q24.2"; locus "MER61_14q24.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0320"; repClass "LTR"; repEnd "4058"; repFamily "ERV1"; repLeft "3988"; repStart "-1159"; chr14 rmsk exon 70399983 70400440 1669 - . gene_id "MER61_14q24.2"; transcript_id "MER61_14q24.2"; locus "MER61_14q24.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0320"; repClass "LTR"; repEnd "2802"; repFamily "ERV1"; repLeft "2467"; repStart "-2415"; ### LTR23_14q24.2 ### chr14 rmsk gene 70402689 70404833 . + . gene_id "LTR23_14q24.2"; transcript_id "LTR23_14q24.2"; locus "LTR23_14q24.2"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0057"; model_cov "1187"; model_pct "23.2"; chr14 rmsk exon 70402689 70402863 545 + . gene_id "LTR23_14q24.2"; transcript_id "LTR23_14q24.2"; locus "LTR23_14q24.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0057"; repClass "LTR"; repEnd "993"; repFamily "ERV1"; repLeft "-4130"; repStart "802"; chr14 rmsk exon 70403084 70403338 1267 + . gene_id "LTR23_14q24.2"; transcript_id "LTR23_14q24.2"; locus "LTR23_14q24.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0057"; repClass "LTR"; repEnd "1480"; repFamily "ERV1"; repLeft "-3643"; repStart "1217"; chr14 rmsk exon 70403874 70404083 1267 + . gene_id "LTR23_14q24.2"; transcript_id "LTR23_14q24.2"; locus "LTR23_14q24.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0057"; repClass "LTR"; repEnd "1656"; repFamily "ERV1"; repLeft "-3467"; repStart "1481"; chr14 rmsk exon 70404306 70404833 1669 + . gene_id "LTR23_14q24.2"; transcript_id "LTR23_14q24.2"; locus "LTR23_14q24.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0057"; repClass "LTR"; repEnd "2288"; repFamily "ERV1"; repLeft "-2835"; repStart "1730"; ### ERV316A3_14q24.2c ### chr14 rmsk gene 70427732 70428364 . - . gene_id "ERV316A3_14q24.2c"; transcript_id "ERV316A3_14q24.2c"; locus "ERV316A3_14q24.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2314"; model_cov "645"; model_pct "12.3"; chr14 rmsk exon 70427732 70428364 1789 - . gene_id "ERV316A3_14q24.2c"; transcript_id "ERV316A3_14q24.2c"; locus "ERV316A3_14q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2314"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2290"; repStart "-2291"; ### HERVL_14q24.2b ### chr14 rmsk gene 70431965 70436463 . - . gene_id "HERVL_14q24.2b"; transcript_id "HERVL_14q24.2b"; locus "HERVL_14q24.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1098"; model_cov "4139"; model_pct "73.2"; chr14 rmsk exon 70431965 70432231 2019 - . gene_id "HERVL_14q24.2b"; transcript_id "HERVL_14q24.2b"; locus "HERVL_14q24.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1098"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "5"; repStart "-173"; chr14 rmsk exon 70432236 70434415 17304 - . gene_id "HERVL_14q24.2b"; transcript_id "HERVL_14q24.2b"; locus "HERVL_14q24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1098"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3479"; repStart "0"; chr14 rmsk exon 70434407 70436377 15493 - . gene_id "HERVL_14q24.2b"; transcript_id "HERVL_14q24.2b"; locus "HERVL_14q24.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1098"; repClass "LTR"; repEnd "1965"; repFamily "ERVL"; repLeft "1"; repStart "-3689"; chr14 rmsk exon 70436378 70436463 303 - . gene_id "HERVL_14q24.2b"; transcript_id "HERVL_14q24.2b"; locus "HERVL_14q24.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1098"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "367"; repStart "0"; ### HERV3_14q24.2 ### chr14 rmsk gene 70436464 70443477 . - . gene_id "HERV3_14q24.2"; transcript_id "HERV3_14q24.2"; locus "HERV3_14q24.2"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0056"; model_cov "5817"; model_pct "69.0"; chr14 rmsk exon 70436464 70437051 3645 - . gene_id "HERV3_14q24.2"; transcript_id "HERV3_14q24.2"; locus "HERV3_14q24.2"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0056"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 70437052 70442726 37652 - . gene_id "HERV3_14q24.2"; transcript_id "HERV3_14q24.2"; locus "HERV3_14q24.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0056"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "2773"; repStart "0"; chr14 rmsk exon 70442725 70442888 983 - . gene_id "HERV3_14q24.2"; transcript_id "HERV3_14q24.2"; locus "HERV3_14q24.2"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0056"; repClass "LTR"; repEnd "166"; repFamily "ERV1"; repLeft "2"; repStart "-8260"; chr14 rmsk exon 70442889 70443477 4078 - . gene_id "HERV3_14q24.2"; transcript_id "HERV3_14q24.2"; locus "HERV3_14q24.2"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0056"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_14q24.2 ### chr14 rmsk gene 70444440 70446634 . - . gene_id "LTR25_14q24.2"; transcript_id "LTR25_14q24.2"; locus "LTR25_14q24.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0104"; model_cov "2891"; model_pct "40.2"; chr14 rmsk exon 70444440 70446190 3280 - . gene_id "LTR25_14q24.2"; transcript_id "LTR25_14q24.2"; locus "LTR25_14q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0104"; repClass "LTR"; repEnd "6889"; repFamily "ERV1"; repLeft "4142"; repStart "-299"; chr14 rmsk exon 70446180 70446634 895 - . gene_id "LTR25_14q24.2"; transcript_id "LTR25_14q24.2"; locus "LTR25_14q24.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0104"; repClass "LTR"; repEnd "6106"; repFamily "ERV1"; repLeft "5962"; repStart "-1082"; ### ERV316A3_14q24.2d ### chr14 rmsk gene 70464616 70465633 . + . gene_id "ERV316A3_14q24.2d"; transcript_id "ERV316A3_14q24.2d"; locus "ERV316A3_14q24.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2315"; model_cov "1000"; model_pct "19.1"; chr14 rmsk exon 70464616 70465633 2835 + . gene_id "ERV316A3_14q24.2d"; transcript_id "ERV316A3_14q24.2d"; locus "ERV316A3_14q24.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2315"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "-322"; repStart "3904"; ### ERV316A3_14q24.2e ### chr14 rmsk gene 70514889 70519285 . + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2316"; model_cov "3343"; model_pct "64.0"; chr14 rmsk exon 70514889 70515068 579 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-4762"; repStart "283"; chr14 rmsk exon 70515617 70515812 579 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "667"; repFamily "ERVL"; repLeft "-4559"; repStart "465"; chr14 rmsk exon 70515995 70516170 493 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "846"; repFamily "ERVL"; repLeft "-4380"; repStart "664"; chr14 rmsk exon 70516208 70517190 1940 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "1941"; repFamily "ERVL"; repLeft "-3285"; repStart "974"; chr14 rmsk exon 70517202 70517837 2168 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2468"; chr14 rmsk exon 70517854 70519004 2411 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4032"; chr14 rmsk exon 70519023 70519285 598 + . gene_id "ERV316A3_14q24.2e"; transcript_id "ERV316A3_14q24.2e"; locus "ERV316A3_14q24.2e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2316"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-127"; repStart "21"; ### LTR19_14q24.2 ### chr14 rmsk gene 70536570 70544333 . + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0046"; model_cov "5596"; model_pct "100.0"; chr14 rmsk exon 70536570 70537060 3213 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr14 rmsk exon 70537061 70538797 11444 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "1768"; repFamily "ERV1"; repLeft "-3818"; repStart "1"; chr14 rmsk exon 70540179 70540798 6024 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "2376"; repFamily "ERV1"; repLeft "-3210"; repStart "1759"; chr14 rmsk exon 70541089 70542658 6441 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "4290"; repFamily "ERV1"; repLeft "-1296"; repStart "1974"; chr14 rmsk exon 70542952 70543174 6441 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "4504"; repFamily "ERV1"; repLeft "-1082"; repStart "4291"; chr14 rmsk exon 70543177 70543857 4972 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "4903"; chr14 rmsk exon 70543858 70544333 3561 + . gene_id "LTR19_14q24.2"; transcript_id "LTR19_14q24.2"; locus "LTR19_14q24.2"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0046"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_14q24.2a ### chr14 rmsk gene 70865494 70869706 . - . gene_id "MER41_14q24.2a"; transcript_id "MER41_14q24.2a"; locus "MER41_14q24.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0438"; model_cov "4615"; model_pct "77.6"; chr14 rmsk exon 70865494 70865554 1605 - . gene_id "MER41_14q24.2a"; transcript_id "MER41_14q24.2a"; locus "MER41_14q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0438"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5890"; repStart "0"; chr14 rmsk exon 70865851 70868762 14758 - . gene_id "MER41_14q24.2a"; transcript_id "MER41_14q24.2a"; locus "MER41_14q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0438"; repClass "LTR"; repEnd "5895"; repFamily "ERV1"; repLeft "1724"; repStart "-51"; chr14 rmsk exon 70869063 70869706 14758 - . gene_id "MER41_14q24.2a"; transcript_id "MER41_14q24.2a"; locus "MER41_14q24.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0438"; repClass "LTR"; repEnd "2965"; repFamily "ERV1"; repLeft "2577"; repStart "-2981"; ### MER41_14q24.2b ### chr14 rmsk gene 70870019 70872265 . - . gene_id "MER41_14q24.2b"; transcript_id "MER41_14q24.2b"; locus "MER41_14q24.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0439"; model_cov "2941"; model_pct "49.5"; chr14 rmsk exon 70870019 70871633 4681 - . gene_id "MER41_14q24.2b"; transcript_id "MER41_14q24.2b"; locus "MER41_14q24.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0439"; repClass "LTR"; repEnd "5551"; repFamily "ERV1"; repLeft "2899"; repStart "-395"; chr14 rmsk exon 70871713 70871954 3004 - . gene_id "MER41_14q24.2b"; transcript_id "MER41_14q24.2b"; locus "MER41_14q24.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0439"; repClass "LTR"; repEnd "-400"; repFamily "ERV1"; repLeft "-529"; repStart "-6346"; chr14 rmsk exon 70872141 70872243 303 - . gene_id "MER41_14q24.2b"; transcript_id "MER41_14q24.2b"; locus "MER41_14q24.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0439"; repClass "LTR"; repEnd "-647"; repFamily "ERV1"; repLeft "-758"; repStart "-6593"; chr14 rmsk exon 70872216 70872265 253 - . gene_id "MER41_14q24.2b"; transcript_id "MER41_14q24.2b"; locus "MER41_14q24.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0439"; repClass "LTR"; repEnd "-891"; repFamily "ERV1"; repLeft "-940"; repStart "-6837"; ### HERVH_14q24.2b ### chr14 rmsk gene 71124207 71130006 . + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1028"; model_cov "4901"; model_pct "63.5"; chr14 rmsk exon 71124207 71124614 2999 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 71124624 71127713 16966 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "8"; chr14 rmsk exon 71127708 71127855 890 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr14 rmsk exon 71127846 71128340 3318 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr14 rmsk exon 71128343 71129003 4427 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 71129005 71129221 1275 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 71129220 71129598 2481 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr14 rmsk exon 71129601 71130006 2930 + . gene_id "HERVH_14q24.2b"; transcript_id "HERVH_14q24.2b"; locus "HERVH_14q24.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1028"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; ### ERV316A3_14q24.2f ### chr14 rmsk gene 71132407 71138320 . - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2318"; model_cov "3902"; model_pct "74.7"; chr14 rmsk exon 71132407 71134206 4315 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "4686"; repFamily "ERVL"; repLeft "2808"; repStart "-540"; chr14 rmsk exon 71134315 71134608 1079 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "2312"; repStart "-2630"; chr14 rmsk exon 71135406 71136537 3192 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "1809"; repFamily "ERVL"; repLeft "518"; repStart "-3417"; chr14 rmsk exon 71137321 71137598 3192 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "1005"; repFamily "ERVL"; repLeft "709"; repStart "-4221"; chr14 rmsk exon 71137689 71137752 422 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "257"; repStart "-118"; chr14 rmsk exon 71137830 71137987 425 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "306"; repStart "-4767"; chr14 rmsk exon 71138005 71138320 1182 - . gene_id "ERV316A3_14q24.2f"; transcript_id "ERV316A3_14q24.2f"; locus "ERV316A3_14q24.2f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2318"; repClass "LTR"; repEnd "361"; repFamily "ERVL"; repLeft "21"; repStart "-77"; ### HERVL_14q24.2c ### chr14 rmsk gene 71459383 71466120 . - . gene_id "HERVL_14q24.2c"; transcript_id "HERVL_14q24.2c"; locus "HERVL_14q24.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1099"; model_cov "5651"; model_pct "99.9"; chr14 rmsk exon 71459383 71459859 2690 - . gene_id "HERVL_14q24.2c"; transcript_id "HERVL_14q24.2c"; locus "HERVL_14q24.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1099"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 71459860 71464360 41085 - . gene_id "HERVL_14q24.2c"; transcript_id "HERVL_14q24.2c"; locus "HERVL_14q24.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1099"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1093"; repStart "0"; chr14 rmsk exon 71464675 71465707 41085 - . gene_id "HERVL_14q24.2c"; transcript_id "HERVL_14q24.2c"; locus "HERVL_14q24.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1099"; repClass "LTR"; repEnd "1092"; repFamily "ERVL"; repLeft "2"; repStart "-4562"; chr14 rmsk exon 71465708 71466120 3038 - . gene_id "HERVL_14q24.2c"; transcript_id "HERVL_14q24.2c"; locus "HERVL_14q24.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1099"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_14q24.2d ### chr14 rmsk gene 71935985 71941877 . - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1100"; model_cov "4962"; model_pct "87.8"; chr14 rmsk exon 71935985 71936015 2900 - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1100"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "405"; repStart "-10"; chr14 rmsk exon 71936111 71936515 2900 - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1100"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "3"; repStart "-40"; chr14 rmsk exon 71936518 71940970 36326 - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1100"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1168"; repStart "0"; chr14 rmsk exon 71940970 71941444 3902 - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1100"; repClass "LTR"; repEnd "477"; repFamily "ERVL"; repLeft "1"; repStart "-5177"; chr14 rmsk exon 71941445 71941877 2873 - . gene_id "HERVL_14q24.2d"; transcript_id "HERVL_14q24.2d"; locus "HERVL_14q24.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1100"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_14q24.2c ### chr14 rmsk gene 73128452 73134036 . - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1029"; model_cov "4729"; model_pct "61.3"; chr14 rmsk exon 73128452 73128821 1680 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 73128822 73129359 3549 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr14 rmsk exon 73129410 73129784 2619 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6574"; repStart "-765"; chr14 rmsk exon 73129815 73132071 17328 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "3817"; repFamily "ERV1"; repLeft "1609"; repStart "-3896"; chr14 rmsk exon 73132378 73133661 17328 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "1608"; repFamily "ERV1"; repLeft "1"; repStart "-6105"; chr14 rmsk exon 73133662 73134036 1895 - . gene_id "HERVH_14q24.2c"; transcript_id "HERVH_14q24.2c"; locus "HERVH_14q24.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1029"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_14q24.3 ### chr14 rmsk gene 73601155 73607029 . - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0105"; model_cov "2566"; model_pct "35.7"; chr14 rmsk exon 73601155 73601287 2445 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "5404"; repFamily "ERV1"; repLeft "5284"; repStart "-1784"; chr14 rmsk exon 73601573 73601927 2445 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "5283"; repFamily "ERV1"; repLeft "4610"; repStart "-1905"; chr14 rmsk exon 73602239 73602254 401 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4609"; repFamily "ERV1"; repLeft "4596"; repStart "-2579"; chr14 rmsk exon 73602666 73602953 1816 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4601"; repFamily "ERV1"; repLeft "4311"; repStart "-2587"; chr14 rmsk exon 73602953 73603343 4758 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4767"; repFamily "ERV1"; repLeft "4395"; repStart "-2421"; chr14 rmsk exon 73603614 73603722 4758 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4394"; repFamily "ERV1"; repLeft "4289"; repStart "-2794"; chr14 rmsk exon 73604031 73604160 4758 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4288"; repFamily "ERV1"; repLeft "4177"; repStart "-2900"; chr14 rmsk exon 73604786 73605278 4758 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "4176"; repFamily "ERV1"; repLeft "3752"; repStart "-3012"; chr14 rmsk exon 73606608 73607029 3197 - . gene_id "LTR25_14q24.3"; transcript_id "LTR25_14q24.3"; locus "LTR25_14q24.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0105"; repClass "LTR"; repEnd "2897"; repFamily "ERV1"; repLeft "2439"; repStart "-4291"; ### HERVH_14q24.3a ### chr14 rmsk gene 73703339 73709213 . + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1030"; model_cov "5061"; model_pct "65.6"; chr14 rmsk exon 73703339 73703768 3437 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 73703771 73707030 21093 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr14 rmsk exon 73707021 73707528 3404 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr14 rmsk exon 73707531 73708191 4292 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 73708193 73708409 1412 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 73708408 73708784 2560 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr14 rmsk exon 73708785 73709213 3395 + . gene_id "HERVH_14q24.3a"; transcript_id "HERVH_14q24.3a"; locus "HERVH_14q24.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1030"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_14q24.3 ### chr14 rmsk gene 74794530 74795378 . - . gene_id "ERVLE_14q24.3"; transcript_id "ERVLE_14q24.3"; locus "ERVLE_14q24.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3064"; model_cov "840"; model_pct "14.8"; chr14 rmsk exon 74794530 74795378 2780 - . gene_id "ERVLE_14q24.3"; transcript_id "ERVLE_14q24.3"; locus "ERVLE_14q24.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3064"; repClass "LTR"; repEnd "5580"; repFamily "ERVL"; repLeft "4740"; repStart "-87"; ### HERVH_14q24.3b ### chr14 rmsk gene 75580498 75586497 . - . gene_id "HERVH_14q24.3b"; transcript_id "HERVH_14q24.3b"; locus "HERVH_14q24.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1031"; model_cov "5449"; model_pct "70.6"; chr14 rmsk exon 75580498 75580928 3137 - . gene_id "HERVH_14q24.3b"; transcript_id "HERVH_14q24.3b"; locus "HERVH_14q24.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1031"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 75580929 75581368 2710 - . gene_id "HERVH_14q24.3b"; transcript_id "HERVH_14q24.3b"; locus "HERVH_14q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1031"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr14 rmsk exon 75581373 75586070 8790 - . gene_id "HERVH_14q24.3b"; transcript_id "HERVH_14q24.3b"; locus "HERVH_14q24.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1031"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "1"; repStart "-2693"; chr14 rmsk exon 75586071 75586497 3374 - . gene_id "HERVH_14q24.3b"; transcript_id "HERVH_14q24.3b"; locus "HERVH_14q24.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1031"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_14q24.3 ### chr14 rmsk gene 77314097 77319837 . + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0379"; model_cov "3312"; model_pct "59.9"; chr14 rmsk exon 77314097 77314508 1844 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "0"; repStart "5"; chr14 rmsk exon 77314730 77315138 1064 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "1364"; repFamily "ERVL"; repLeft "-4166"; repStart "924"; chr14 rmsk exon 77315435 77315584 454 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "1527"; repFamily "ERVL"; repLeft "-4003"; repStart "1380"; chr14 rmsk exon 77316102 77316314 1542 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "2883"; repFamily "ERVL"; repLeft "-2647"; repStart "2673"; chr14 rmsk exon 77316591 77316835 1542 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "-2408"; repStart "2884"; chr14 rmsk exon 77316854 77318735 7067 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "5127"; repFamily "ERVL"; repLeft "-403"; repStart "3247"; chr14 rmsk exon 77319036 77319420 7067 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "5525"; repFamily "ERVL"; repLeft "-5"; repStart "5128"; chr14 rmsk exon 77319439 77319837 1881 + . gene_id "HERVL40_14q24.3"; transcript_id "HERVL40_14q24.3"; locus "HERVL40_14q24.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0379"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-16"; repStart "28"; ### HERVFRD_14q24.3a ### chr14 rmsk gene 77629942 77633610 . - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0149"; model_cov "1859"; model_pct "25.8"; chr14 rmsk exon 77629942 77630524 3802 - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0149"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "129"; repStart "-23"; chr14 rmsk exon 77630866 77631247 10232 - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0149"; repClass "LTR"; repEnd "6062"; repFamily "ERV1"; repLeft "5692"; repStart "-1143"; chr14 rmsk exon 77631556 77632246 10232 - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0149"; repClass "LTR"; repEnd "5691"; repFamily "ERV1"; repLeft "4943"; repStart "-1514"; chr14 rmsk exon 77632546 77633189 10232 - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0149"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "4309"; repStart "-2263"; chr14 rmsk exon 77633499 77633610 10232 - . gene_id "HERVFRD_14q24.3a"; transcript_id "HERVFRD_14q24.3a"; locus "HERVFRD_14q24.3a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0149"; repClass "LTR"; repEnd "4308"; repFamily "ERV1"; repLeft "4200"; repStart "-2897"; ### HERVFRD_14q24.3b ### chr14 rmsk gene 77633823 77636646 . - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0150"; model_cov "949"; model_pct "13.2"; chr14 rmsk exon 77633823 77634010 1320 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0150"; repClass "LTR"; repEnd "4537"; repFamily "ERV1"; repLeft "4350"; repStart "-2668"; chr14 rmsk exon 77634304 77634333 875 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0150"; repClass "LTR"; repEnd "4198"; repFamily "ERV1"; repLeft "4170"; repStart "-3007"; chr14 rmsk exon 77634331 77634715 3024 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0150"; repClass "LTR"; repEnd "3941"; repFamily "ERV1"; repLeft "3543"; repStart "-3264"; chr14 rmsk exon 77635012 77635279 3024 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0150"; repClass "LTR"; repEnd "3542"; repFamily "ERV1"; repLeft "3286"; repStart "-3663"; chr14 rmsk exon 77636246 77636335 3024 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0150"; repClass "LTR"; repEnd "3285"; repFamily "ERV1"; repLeft "3205"; repStart "-3920"; chr14 rmsk exon 77636342 77636646 1800 - . gene_id "HERVFRD_14q24.3b"; transcript_id "HERVFRD_14q24.3b"; locus "HERVFRD_14q24.3b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0150"; repClass "LTR"; repEnd "305"; repFamily "ERV1"; repLeft "1"; repStart "-429"; ### ERVLB4_14q31.1a ### chr14 rmsk gene 79927248 79931851 . - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1454"; model_cov "2772"; model_pct "48.5"; chr14 rmsk exon 79927248 79927668 2120 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 79927669 79927805 1978 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5586"; repStart "-1"; chr14 rmsk exon 79928114 79928747 2445 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "5585"; repFamily "ERVL"; repLeft "4937"; repStart "-129"; chr14 rmsk exon 79928744 79929711 9380 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "2000"; repFamily "ERVL"; repLeft "1003"; repStart "-3714"; chr14 rmsk exon 79930398 79931370 9380 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "2"; repStart "-4712"; chr14 rmsk exon 79931447 79931851 1882 - . gene_id "ERVLB4_14q31.1a"; transcript_id "ERVLB4_14q31.1a"; locus "ERVLB4_14q31.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1454"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "-152"; repStart "-39"; ### ERV316A3_14q31.1a ### chr14 rmsk gene 80013757 80014676 . + . gene_id "ERV316A3_14q31.1a"; transcript_id "ERV316A3_14q31.1a"; locus "ERV316A3_14q31.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2319"; model_cov "612"; model_pct "11.7"; chr14 rmsk exon 80013757 80014316 1685 + . gene_id "ERV316A3_14q31.1a"; transcript_id "ERV316A3_14q31.1a"; locus "ERV316A3_14q31.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2319"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4613"; chr14 rmsk exon 80014320 80014676 538 + . gene_id "ERV316A3_14q31.1a"; transcript_id "ERV316A3_14q31.1a"; locus "ERV316A3_14q31.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2319"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-38"; repStart "32"; ### HERVL_14q31.1a ### chr14 rmsk gene 80224810 80231256 . - . gene_id "HERVL_14q31.1a"; transcript_id "HERVL_14q31.1a"; locus "HERVL_14q31.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1101"; model_cov "5653"; model_pct "100.0"; chr14 rmsk exon 80224810 80225246 3196 - . gene_id "HERVL_14q31.1a"; transcript_id "HERVL_14q31.1a"; locus "HERVL_14q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1101"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 80225247 80230830 44372 - . gene_id "HERVL_14q31.1a"; transcript_id "HERVL_14q31.1a"; locus "HERVL_14q31.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1101"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 80230831 80231256 3021 - . gene_id "HERVL_14q31.1a"; transcript_id "HERVL_14q31.1a"; locus "HERVL_14q31.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1101"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_14q31.1a ### chr14 rmsk gene 80414381 80415487 . + . gene_id "ERVLE_14q31.1a"; transcript_id "ERVLE_14q31.1a"; locus "ERVLE_14q31.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3067"; model_cov "1016"; model_pct "17.9"; chr14 rmsk exon 80414381 80414910 1271 + . gene_id "ERVLE_14q31.1a"; transcript_id "ERVLE_14q31.1a"; locus "ERVLE_14q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3067"; repClass "LTR"; repEnd "1465"; repFamily "ERVL"; repLeft "-4202"; repStart "920"; chr14 rmsk exon 80415042 80415487 1155 + . gene_id "ERVLE_14q31.1a"; transcript_id "ERVLE_14q31.1a"; locus "ERVLE_14q31.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3067"; repClass "LTR"; repEnd "1985"; repFamily "ERVL"; repLeft "-3682"; repStart "1514"; ### HML5_14q31.1 ### chr14 rmsk gene 80464388 80473042 . + . gene_id "HML5_14q31.1"; transcript_id "HML5_14q31.1"; locus "HML5_14q31.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0099"; model_cov "6833"; model_pct "99.9"; chr14 rmsk exon 80464388 80464865 2552 + . gene_id "HML5_14q31.1"; transcript_id "HML5_14q31.1"; locus "HML5_14q31.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0099"; repClass "LTR"; repEnd "523"; repFamily "ERVK"; repLeft "-3"; repStart "1"; chr14 rmsk exon 80464872 80467523 47960 + . gene_id "HML5_14q31.1"; transcript_id "HML5_14q31.1"; locus "HML5_14q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0099"; repClass "LTR"; repEnd "2677"; repFamily "ERVK"; repLeft "-4160"; repStart "3"; chr14 rmsk exon 80467815 80471971 47960 + . gene_id "HML5_14q31.1"; transcript_id "HML5_14q31.1"; locus "HML5_14q31.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0099"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2678"; chr14 rmsk exon 80472558 80473042 2809 + . gene_id "HML5_14q31.1"; transcript_id "HML5_14q31.1"; locus "HML5_14q31.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0099"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "22"; ### ERVLE_14q31.1b ### chr14 rmsk gene 80968503 80971945 . - . gene_id "ERVLE_14q31.1b"; transcript_id "ERVLE_14q31.1b"; locus "ERVLE_14q31.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3068"; model_cov "3244"; model_pct "57.2"; chr14 rmsk exon 80968503 80970824 5427 - . gene_id "ERVLE_14q31.1b"; transcript_id "ERVLE_14q31.1b"; locus "ERVLE_14q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3068"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "2841"; repStart "-406"; chr14 rmsk exon 80971124 80971724 5427 - . gene_id "ERVLE_14q31.1b"; transcript_id "ERVLE_14q31.1b"; locus "ERVLE_14q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3068"; repClass "LTR"; repEnd "2840"; repFamily "ERVL"; repLeft "2220"; repStart "-2827"; chr14 rmsk exon 80971740 80971945 364 - . gene_id "ERVLE_14q31.1b"; transcript_id "ERVLE_14q31.1b"; locus "ERVLE_14q31.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3068"; repClass "LTR"; repEnd "2638"; repFamily "ERVL"; repLeft "2434"; repStart "-3029"; ### ERV316A3_14q31.1b ### chr14 rmsk gene 80976240 80978766 . - . gene_id "ERV316A3_14q31.1b"; transcript_id "ERV316A3_14q31.1b"; locus "ERV316A3_14q31.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2320"; model_cov "1565"; model_pct "29.9"; chr14 rmsk exon 80976240 80977313 2735 - . gene_id "ERV316A3_14q31.1b"; transcript_id "ERV316A3_14q31.1b"; locus "ERV316A3_14q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2320"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4101"; repStart "0"; chr14 rmsk exon 80977349 80977795 1145 - . gene_id "ERV316A3_14q31.1b"; transcript_id "ERV316A3_14q31.1b"; locus "ERV316A3_14q31.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2320"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "2837"; repStart "-1949"; chr14 rmsk exon 80978372 80978766 1802 - . gene_id "ERV316A3_14q31.1b"; transcript_id "ERV316A3_14q31.1b"; locus "ERV316A3_14q31.1b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2320"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_14q31.1b ### chr14 rmsk gene 81230150 81234145 . + . gene_id "ERVLB4_14q31.1b"; transcript_id "ERVLB4_14q31.1b"; locus "ERVLB4_14q31.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1455"; model_cov "3315"; model_pct "58.0"; chr14 rmsk exon 81230150 81230236 599 + . gene_id "ERVLB4_14q31.1b"; transcript_id "ERVLB4_14q31.1b"; locus "ERVLB4_14q31.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1455"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-67"; repStart "357"; chr14 rmsk exon 81230290 81230331 599 + . gene_id "ERVLB4_14q31.1b"; transcript_id "ERVLB4_14q31.1b"; locus "ERVLB4_14q31.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1455"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "-2"; repStart "449"; chr14 rmsk exon 81230355 81233044 18766 + . gene_id "ERVLB4_14q31.1b"; transcript_id "ERVLB4_14q31.1b"; locus "ERVLB4_14q31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1455"; repClass "LTR"; repEnd "2731"; repFamily "ERVL"; repLeft "-2983"; repStart "125"; chr14 rmsk exon 81233437 81234145 18766 + . gene_id "ERVLB4_14q31.1b"; transcript_id "ERVLB4_14q31.1b"; locus "ERVLB4_14q31.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1455"; repClass "LTR"; repEnd "3441"; repFamily "ERVL"; repLeft "-2273"; repStart "2732"; ### HERVL_14q31.1b ### chr14 rmsk gene 81844100 81849084 . - . gene_id "HERVL_14q31.1b"; transcript_id "HERVL_14q31.1b"; locus "HERVL_14q31.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1102"; model_cov "4447"; model_pct "78.7"; chr14 rmsk exon 81844100 81848542 30815 - . gene_id "HERVL_14q31.1b"; transcript_id "HERVL_14q31.1b"; locus "HERVL_14q31.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1102"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "1"; repStart "-1206"; chr14 rmsk exon 81848543 81849084 1940 - . gene_id "HERVL_14q31.1b"; transcript_id "HERVL_14q31.1b"; locus "HERVL_14q31.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1102"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### MER61_14q31.1a ### chr14 rmsk gene 81852498 81853510 . - . gene_id "MER61_14q31.1a"; transcript_id "MER61_14q31.1a"; locus "MER61_14q31.1a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0324"; model_cov "971"; model_pct "18.6"; chr14 rmsk exon 81852498 81852883 1845 - . gene_id "MER61_14q31.1a"; transcript_id "MER61_14q31.1a"; locus "MER61_14q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0324"; repClass "LTR"; repEnd "2647"; repFamily "ERV1"; repLeft "2341"; repStart "-2570"; chr14 rmsk exon 81852863 81853510 2755 - . gene_id "MER61_14q31.1a"; transcript_id "MER61_14q31.1a"; locus "MER61_14q31.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0324"; repClass "LTR"; repEnd "2139"; repFamily "ERV1"; repLeft "1474"; repStart "-3078"; ### ERVLE_14q31.1c ### chr14 rmsk gene 82042565 82043187 . + . gene_id "ERVLE_14q31.1c"; transcript_id "ERVLE_14q31.1c"; locus "ERVLE_14q31.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3069"; model_cov "592"; model_pct "10.4"; chr14 rmsk exon 82042565 82043187 1089 + . gene_id "ERVLE_14q31.1c"; transcript_id "ERVLE_14q31.1c"; locus "ERVLE_14q31.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3069"; repClass "LTR"; repEnd "5059"; repFamily "ERVL"; repLeft "-608"; repStart "4467"; ### ERVL_14q31.1 ### chr14 rmsk gene 82056694 82060900 . - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0374"; model_cov "3641"; model_pct "63.2"; chr14 rmsk exon 82056694 82056722 2264 - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0374"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "520"; repStart "0"; chr14 rmsk exon 82056772 82057330 2264 - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0374"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "2"; repStart "-35"; chr14 rmsk exon 82057332 82059749 11499 - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0374"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3312"; repStart "0"; chr14 rmsk exon 82059743 82059861 829 - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0374"; repClass "LTR"; repEnd "2617"; repFamily "ERVL"; repLeft "2498"; repStart "-3140"; chr14 rmsk exon 82059855 82060900 5265 - . gene_id "ERVL_14q31.1"; transcript_id "ERVL_14q31.1"; locus "ERVL_14q31.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0374"; repClass "LTR"; repEnd "1203"; repFamily "ERVL"; repLeft "126"; repStart "-4554"; ### HERVH_14q31.1 ### chr14 rmsk gene 82060903 82065781 . - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1033"; model_cov "4478"; model_pct "58.1"; chr14 rmsk exon 82060903 82061313 2752 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 82061314 82061691 2333 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr14 rmsk exon 82061690 82061905 1302 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 82061907 82062567 4567 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 82062570 82063420 5938 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr14 rmsk exon 82063400 82065781 16252 - . gene_id "HERVH_14q31.1"; transcript_id "HERVH_14q31.1"; locus "HERVH_14q31.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1033"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "641"; repStart "-4718"; ### MER41_14q31.1 ### chr14 rmsk gene 82162333 82166408 . + . gene_id "MER41_14q31.1"; transcript_id "MER41_14q31.1"; locus "MER41_14q31.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0441"; model_cov "4101"; model_pct "69.0"; chr14 rmsk exon 82162333 82163040 3815 + . gene_id "MER41_14q31.1"; transcript_id "MER41_14q31.1"; locus "MER41_14q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0441"; repClass "LTR"; repEnd "2584"; repFamily "ERV1"; repLeft "-3362"; repStart "1881"; chr14 rmsk exon 82163337 82166408 11552 + . gene_id "MER41_14q31.1"; transcript_id "MER41_14q31.1"; locus "MER41_14q31.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0441"; repClass "LTR"; repEnd "5849"; repFamily "ERV1"; repLeft "-97"; repStart "2451"; ### MER61_14q31.1b ### chr14 rmsk gene 82870214 82873105 . + . gene_id "MER61_14q31.1b"; transcript_id "MER61_14q31.1b"; locus "MER61_14q31.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0325"; model_cov "3047"; model_pct "58.4"; chr14 rmsk exon 82870214 82872779 15866 + . gene_id "MER61_14q31.1b"; transcript_id "MER61_14q31.1b"; locus "MER61_14q31.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0325"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2170"; chr14 rmsk exon 82872780 82873105 1694 + . gene_id "MER61_14q31.1b"; transcript_id "MER61_14q31.1b"; locus "MER61_14q31.1b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0325"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_14q31.2 ### chr14 rmsk gene 83351968 83353324 . + . gene_id "HERVL_14q31.2"; transcript_id "HERVL_14q31.2"; locus "HERVL_14q31.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1103"; model_cov "800"; model_pct "14.1"; chr14 rmsk exon 83351968 83352443 2840 + . gene_id "HERVL_14q31.2"; transcript_id "HERVL_14q31.2"; locus "HERVL_14q31.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1103"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 83352449 83352494 336 + . gene_id "HERVL_14q31.2"; transcript_id "HERVL_14q31.2"; locus "HERVL_14q31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1103"; repClass "LTR"; repEnd "4944"; repFamily "ERVL"; repLeft "-710"; repStart "4899"; chr14 rmsk exon 83352550 83353274 5235 + . gene_id "HERVL_14q31.2"; transcript_id "HERVL_14q31.2"; locus "HERVL_14q31.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1103"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4899"; chr14 rmsk exon 83353275 83353324 356 + . gene_id "HERVL_14q31.2"; transcript_id "HERVL_14q31.2"; locus "HERVL_14q31.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1103"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "-394"; repStart "1"; ### PRIMA41_14q31.2 ### chr14 rmsk gene 83954465 83959572 . + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0111"; model_cov "4297"; model_pct "55.4"; chr14 rmsk exon 83954465 83954985 4031 + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0111"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 83955072 83955977 6372 + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0111"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "-6826"; repStart "3"; chr14 rmsk exon 83955970 83957579 11284 + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0111"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "1363"; chr14 rmsk exon 83957575 83958051 11598 + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0111"; repClass "LTR"; repEnd "4877"; repFamily "ERV1"; repLeft "-2879"; repStart "4394"; chr14 rmsk exon 83958378 83959572 11598 + . gene_id "PRIMA41_14q31.2"; transcript_id "PRIMA41_14q31.2"; locus "PRIMA41_14q31.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0111"; repClass "LTR"; repEnd "6073"; repFamily "ERV1"; repLeft "-1683"; repStart "4878"; ### ERV316A3_14q31.2 ### chr14 rmsk gene 83965475 83966579 . - . gene_id "ERV316A3_14q31.2"; transcript_id "ERV316A3_14q31.2"; locus "ERV316A3_14q31.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2323"; model_cov "1075"; model_pct "20.6"; chr14 rmsk exon 83965475 83965701 450 - . gene_id "ERV316A3_14q31.2"; transcript_id "ERV316A3_14q31.2"; locus "ERV316A3_14q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2323"; repClass "LTR"; repEnd "4477"; repFamily "ERVL"; repLeft "4253"; repStart "-749"; chr14 rmsk exon 83965761 83966579 1199 - . gene_id "ERV316A3_14q31.2"; transcript_id "ERV316A3_14q31.2"; locus "ERV316A3_14q31.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2323"; repClass "LTR"; repEnd "4380"; repFamily "ERVL"; repLeft "3529"; repStart "-846"; ### ERVLE_14q31.3a ### chr14 rmsk gene 84438524 84439648 . - . gene_id "ERVLE_14q31.3a"; transcript_id "ERVLE_14q31.3a"; locus "ERVLE_14q31.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3071"; model_cov "870"; model_pct "15.4"; chr14 rmsk exon 84438524 84438752 1187 - . gene_id "ERVLE_14q31.3a"; transcript_id "ERVLE_14q31.3a"; locus "ERVLE_14q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3071"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "4602"; repStart "-818"; chr14 rmsk exon 84439069 84439648 1187 - . gene_id "ERVLE_14q31.3a"; transcript_id "ERVLE_14q31.3a"; locus "ERVLE_14q31.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3071"; repClass "LTR"; repEnd "4601"; repFamily "ERVL"; repLeft "3978"; repStart "-1066"; ### HERVH_14q31.3a ### chr14 rmsk gene 84500250 84505973 . - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1034"; model_cov "4908"; model_pct "63.6"; chr14 rmsk exon 84500250 84500659 2872 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 84500660 84501036 2279 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr14 rmsk exon 84501035 84501243 1297 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 84501245 84501907 4364 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 84501910 84502412 3392 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr14 rmsk exon 84502403 84502550 838 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr14 rmsk exon 84502545 84505562 20111 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr14 rmsk exon 84505565 84505973 2906 - . gene_id "HERVH_14q31.3a"; transcript_id "HERVH_14q31.3a"; locus "HERVH_14q31.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1034"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_14q31.3a ### chr14 rmsk gene 84847757 84848558 . + . gene_id "ERVLB4_14q31.3a"; transcript_id "ERVLB4_14q31.3a"; locus "ERVLB4_14q31.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1456"; model_cov "897"; model_pct "15.7"; chr14 rmsk exon 84847757 84848558 819 + . gene_id "ERVLB4_14q31.3a"; transcript_id "ERVLB4_14q31.3a"; locus "ERVLB4_14q31.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1456"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-493"; repStart "4324"; ### HERVL_14q31.3a ### chr14 rmsk gene 85260794 85263704 . - . gene_id "HERVL_14q31.3a"; transcript_id "HERVL_14q31.3a"; locus "HERVL_14q31.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1104"; model_cov "1958"; model_pct "34.6"; chr14 rmsk exon 85260794 85261253 2771 - . gene_id "HERVL_14q31.3a"; transcript_id "HERVL_14q31.3a"; locus "HERVL_14q31.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1104"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr14 rmsk exon 85261257 85263203 15390 - . gene_id "HERVL_14q31.3a"; transcript_id "HERVL_14q31.3a"; locus "HERVL_14q31.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1104"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3696"; repStart "0"; chr14 rmsk exon 85263204 85263704 2760 - . gene_id "HERVL_14q31.3a"; transcript_id "HERVL_14q31.3a"; locus "HERVL_14q31.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1104"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-122"; repStart "-6"; ### ERVLE_14q31.3b ### chr14 rmsk gene 85641752 85644600 . + . gene_id "ERVLE_14q31.3b"; transcript_id "ERVLE_14q31.3b"; locus "ERVLE_14q31.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3072"; model_cov "1559"; model_pct "27.5"; chr14 rmsk exon 85641752 85642844 1632 + . gene_id "ERVLE_14q31.3b"; transcript_id "ERVLE_14q31.3b"; locus "ERVLE_14q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3072"; repClass "LTR"; repEnd "1149"; repFamily "ERVL"; repLeft "-4518"; repStart "38"; chr14 rmsk exon 85644096 85644360 418 + . gene_id "ERVLE_14q31.3b"; transcript_id "ERVLE_14q31.3b"; locus "ERVLE_14q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3072"; repClass "LTR"; repEnd "2605"; repFamily "ERVL"; repLeft "-3062"; repStart "2339"; chr14 rmsk exon 85644422 85644600 302 + . gene_id "ERVLE_14q31.3b"; transcript_id "ERVLE_14q31.3b"; locus "ERVLE_14q31.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3072"; repClass "LTR"; repEnd "3550"; repFamily "ERVL"; repLeft "-2117"; repStart "3368"; ### ERVLE_14q31.3c ### chr14 rmsk gene 85644643 85648216 . + . gene_id "ERVLE_14q31.3c"; transcript_id "ERVLE_14q31.3c"; locus "ERVLE_14q31.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3073"; model_cov "2185"; model_pct "38.6"; chr14 rmsk exon 85644643 85645153 1118 + . gene_id "ERVLE_14q31.3c"; transcript_id "ERVLE_14q31.3c"; locus "ERVLE_14q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3073"; repClass "LTR"; repEnd "3420"; repFamily "ERVL"; repLeft "-2247"; repStart "2913"; chr14 rmsk exon 85645555 85646332 782 + . gene_id "ERVLE_14q31.3c"; transcript_id "ERVLE_14q31.3c"; locus "ERVLE_14q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3073"; repClass "LTR"; repEnd "4735"; repFamily "ERVL"; repLeft "-932"; repStart "3768"; chr14 rmsk exon 85647392 85647989 1469 + . gene_id "ERVLE_14q31.3c"; transcript_id "ERVLE_14q31.3c"; locus "ERVLE_14q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3073"; repClass "LTR"; repEnd "5317"; repFamily "ERVL"; repLeft "-350"; repStart "4685"; chr14 rmsk exon 85648140 85648216 253 + . gene_id "ERVLE_14q31.3c"; transcript_id "ERVLE_14q31.3c"; locus "ERVLE_14q31.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3073"; repClass "LTR"; repEnd "5600"; repFamily "ERVL"; repLeft "-67"; repStart "5521"; ### ERVL_14q31.3 ### chr14 rmsk gene 85716982 85718016 . + . gene_id "ERVL_14q31.3"; transcript_id "ERVL_14q31.3"; locus "ERVL_14q31.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0375"; model_cov "1058"; model_pct "18.4"; chr14 rmsk exon 85716982 85717688 1042 + . gene_id "ERVL_14q31.3"; transcript_id "ERVL_14q31.3"; locus "ERVL_14q31.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0375"; repClass "LTR"; repEnd "3001"; repFamily "ERVL"; repLeft "-2756"; repStart "2264"; chr14 rmsk exon 85717693 85718016 880 + . gene_id "ERVL_14q31.3"; transcript_id "ERVL_14q31.3"; locus "ERVL_14q31.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0375"; repClass "LTR"; repEnd "3361"; repFamily "ERVL"; repLeft "-2396"; repStart "3040"; ### HERVH_14q31.3b ### chr14 rmsk gene 85732437 85738601 . - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1035"; model_cov "5431"; model_pct "70.4"; chr14 rmsk exon 85732437 85732842 2635 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr14 rmsk exon 85732843 85733217 2175 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr14 rmsk exon 85733218 85733433 1337 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 85733435 85734628 7797 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3962"; repStart "-2564"; chr14 rmsk exon 85734666 85735169 3227 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "3492"; repStart "-3721"; chr14 rmsk exon 85735160 85735307 914 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr14 rmsk exon 85735302 85738187 14467 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr14 rmsk exon 85738190 85738601 2714 - . gene_id "HERVH_14q31.3b"; transcript_id "HERVH_14q31.3b"; locus "HERVH_14q31.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1035"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_14q31.3b ### chr14 rmsk gene 85927831 85934155 . - . gene_id "HERVL_14q31.3b"; transcript_id "HERVL_14q31.3b"; locus "HERVL_14q31.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1105"; model_cov "5463"; model_pct "96.6"; chr14 rmsk exon 85927831 85928272 3161 - . gene_id "HERVL_14q31.3b"; transcript_id "HERVL_14q31.3b"; locus "HERVL_14q31.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1105"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 85928273 85929540 8810 - . gene_id "HERVL_14q31.3b"; transcript_id "HERVL_14q31.3b"; locus "HERVL_14q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1105"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4408"; repStart "0"; chr14 rmsk exon 85929529 85933716 32376 - . gene_id "HERVL_14q31.3b"; transcript_id "HERVL_14q31.3b"; locus "HERVL_14q31.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1105"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "1"; repStart "-1436"; chr14 rmsk exon 85933721 85934155 3490 - . gene_id "HERVL_14q31.3b"; transcript_id "HERVL_14q31.3b"; locus "HERVL_14q31.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1105"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-8"; ### ERVLB4_14q31.3b ### chr14 rmsk gene 86017276 86020045 . - . gene_id "ERVLB4_14q31.3b"; transcript_id "ERVLB4_14q31.3b"; locus "ERVLB4_14q31.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1457"; model_cov "2129"; model_pct "37.3"; chr14 rmsk exon 86017276 86019202 10904 - . gene_id "ERVLB4_14q31.3b"; transcript_id "ERVLB4_14q31.3b"; locus "ERVLB4_14q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1457"; repClass "LTR"; repEnd "2245"; repFamily "ERVL"; repLeft "258"; repStart "-3469"; chr14 rmsk exon 86019183 86019323 697 - . gene_id "ERVLB4_14q31.3b"; transcript_id "ERVLB4_14q31.3b"; locus "ERVLB4_14q31.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1457"; repClass "LTR"; repEnd "203"; repFamily "ERVL"; repLeft "61"; repStart "-5511"; chr14 rmsk exon 86019326 86019745 1231 - . gene_id "ERVLB4_14q31.3b"; transcript_id "ERVLB4_14q31.3b"; locus "ERVLB4_14q31.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1457"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "153"; repStart "-2"; chr14 rmsk exon 86019876 86020045 821 - . gene_id "ERVLB4_14q31.3b"; transcript_id "ERVLB4_14q31.3b"; locus "ERVLB4_14q31.3b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1457"; repClass "LTR"; repEnd "121"; repFamily "ERVL"; repLeft "-46"; repStart "-433"; ### ERVLE_14q31.3d ### chr14 rmsk gene 86088258 86089654 . - . gene_id "ERVLE_14q31.3d"; transcript_id "ERVLE_14q31.3d"; locus "ERVLE_14q31.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3076"; model_cov "753"; model_pct "13.3"; chr14 rmsk exon 86088258 86088603 349 - . gene_id "ERVLE_14q31.3d"; transcript_id "ERVLE_14q31.3d"; locus "ERVLE_14q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3076"; repClass "LTR"; repEnd "3471"; repFamily "ERVL"; repLeft "3086"; repStart "-2196"; chr14 rmsk exon 86088881 86089076 629 - . gene_id "ERVLE_14q31.3d"; transcript_id "ERVLE_14q31.3d"; locus "ERVLE_14q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3076"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "2210"; repStart "-3261"; chr14 rmsk exon 86089493 86089654 629 - . gene_id "ERVLE_14q31.3d"; transcript_id "ERVLE_14q31.3d"; locus "ERVLE_14q31.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3076"; repClass "LTR"; repEnd "2209"; repFamily "ERVL"; repLeft "2037"; repStart "-3458"; ### ERVLE_14q31.3e ### chr14 rmsk gene 86147270 86149297 . - . gene_id "ERVLE_14q31.3e"; transcript_id "ERVLE_14q31.3e"; locus "ERVLE_14q31.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3077"; model_cov "1189"; model_pct "21.0"; chr14 rmsk exon 86147270 86147422 533 - . gene_id "ERVLE_14q31.3e"; transcript_id "ERVLE_14q31.3e"; locus "ERVLE_14q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3077"; repClass "LTR"; repEnd "4889"; repFamily "ERVL"; repLeft "4736"; repStart "-778"; chr14 rmsk exon 86147594 86148074 778 - . gene_id "ERVLE_14q31.3e"; transcript_id "ERVLE_14q31.3e"; locus "ERVLE_14q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3077"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "3667"; repStart "-1507"; chr14 rmsk exon 86148148 86148481 683 - . gene_id "ERVLE_14q31.3e"; transcript_id "ERVLE_14q31.3e"; locus "ERVLE_14q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3077"; repClass "LTR"; repEnd "3561"; repFamily "ERVL"; repLeft "3223"; repStart "-2106"; chr14 rmsk exon 86149085 86149297 463 - . gene_id "ERVLE_14q31.3e"; transcript_id "ERVLE_14q31.3e"; locus "ERVLE_14q31.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3077"; repClass "LTR"; repEnd "2936"; repFamily "ERVL"; repLeft "2731"; repStart "-2731"; ### HERVL_14q31.3c ### chr14 rmsk gene 86415606 86417546 . - . gene_id "HERVL_14q31.3c"; transcript_id "HERVL_14q31.3c"; locus "HERVL_14q31.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1106"; model_cov "1497"; model_pct "26.5"; chr14 rmsk exon 86415606 86415684 3059 - . gene_id "HERVL_14q31.3c"; transcript_id "HERVL_14q31.3c"; locus "HERVL_14q31.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1106"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr14 rmsk exon 86415711 86416099 3059 - . gene_id "HERVL_14q31.3c"; transcript_id "HERVL_14q31.3c"; locus "HERVL_14q31.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1106"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chr14 rmsk exon 86416100 86417546 10240 - . gene_id "HERVL_14q31.3c"; transcript_id "HERVL_14q31.3c"; locus "HERVL_14q31.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1106"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4157"; repStart "0"; ### HERVH_14q31.3c ### chr14 rmsk gene 86731586 86737060 . + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1036"; model_cov "4954"; model_pct "64.2"; chr14 rmsk exon 86731586 86731996 2996 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 86731999 86734737 14302 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr14 rmsk exon 86734717 86735527 5654 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "3950"; repFamily "ERV1"; repLeft "-3763"; repStart "3140"; chr14 rmsk exon 86735529 86736057 3576 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4619"; chr14 rmsk exon 86736038 86736274 1405 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr14 rmsk exon 86736275 86736650 2344 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr14 rmsk exon 86736651 86737060 2776 + . gene_id "HERVH_14q31.3c"; transcript_id "HERVH_14q31.3c"; locus "HERVH_14q31.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1036"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_14q31.3f ### chr14 rmsk gene 86954771 86956582 . + . gene_id "ERVLE_14q31.3f"; transcript_id "ERVLE_14q31.3f"; locus "ERVLE_14q31.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3078"; model_cov "1106"; model_pct "19.5"; chr14 rmsk exon 86954771 86954974 543 + . gene_id "ERVLE_14q31.3f"; transcript_id "ERVLE_14q31.3f"; locus "ERVLE_14q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3078"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-5103"; repStart "352"; chr14 rmsk exon 86955418 86955642 264 + . gene_id "ERVLE_14q31.3f"; transcript_id "ERVLE_14q31.3f"; locus "ERVLE_14q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3078"; repClass "LTR"; repEnd "4625"; repFamily "ERVL"; repLeft "-1042"; repStart "4392"; chr14 rmsk exon 86955918 86956582 1106 + . gene_id "ERVLE_14q31.3f"; transcript_id "ERVLE_14q31.3f"; locus "ERVLE_14q31.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3078"; repClass "LTR"; repEnd "5277"; repFamily "ERVL"; repLeft "-390"; repStart "4616"; ### HERVH_14q31.3d ### chr14 rmsk gene 87234691 87240791 . - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1037"; model_cov "5259"; model_pct "68.2"; chr14 rmsk exon 87234691 87235100 2780 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 87235103 87235477 2336 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "7711"; repFamily "ERV1"; repLeft "7324"; repStart "-2"; chr14 rmsk exon 87235478 87235689 1259 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 87235691 87236353 4351 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr14 rmsk exon 87236356 87240380 27658 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr14 rmsk exon 87240384 87240791 2593 - . gene_id "HERVH_14q31.3d"; transcript_id "HERVH_14q31.3d"; locus "HERVH_14q31.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1037"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### ERVLB4_14q31.3c ### chr14 rmsk gene 87261429 87262472 . + . gene_id "ERVLB4_14q31.3c"; transcript_id "ERVLB4_14q31.3c"; locus "ERVLB4_14q31.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1459"; model_cov "1088"; model_pct "19.0"; chr14 rmsk exon 87261429 87262472 2171 + . gene_id "ERVLB4_14q31.3c"; transcript_id "ERVLB4_14q31.3c"; locus "ERVLB4_14q31.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1459"; repClass "LTR"; repEnd "5238"; repFamily "ERVL"; repLeft "-476"; repStart "4150"; ### ERVLE_14q31.3g ### chr14 rmsk gene 87709811 87711608 . - . gene_id "ERVLE_14q31.3g"; transcript_id "ERVLE_14q31.3g"; locus "ERVLE_14q31.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3079"; model_cov "1781"; model_pct "31.4"; chr14 rmsk exon 87709811 87711139 3216 - . gene_id "ERVLE_14q31.3g"; transcript_id "ERVLE_14q31.3g"; locus "ERVLE_14q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3079"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "4327"; repStart "-5"; chr14 rmsk exon 87711166 87711247 286 - . gene_id "ERVLE_14q31.3g"; transcript_id "ERVLE_14q31.3g"; locus "ERVLE_14q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3079"; repClass "LTR"; repEnd "4212"; repFamily "ERVL"; repLeft "4132"; repStart "-1455"; chr14 rmsk exon 87711239 87711608 1190 - . gene_id "ERVLE_14q31.3g"; transcript_id "ERVLE_14q31.3g"; locus "ERVLE_14q31.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3079"; repClass "LTR"; repEnd "3970"; repFamily "ERVL"; repLeft "3604"; repStart "-1697"; ### ERVLB4_14q31.3d ### chr14 rmsk gene 87786721 87792168 . - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1460"; model_cov "4324"; model_pct "75.7"; chr14 rmsk exon 87786721 87788173 7873 - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1460"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "3222"; repStart "-961"; chr14 rmsk exon 87788173 87789178 5803 - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1460"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "1719"; repStart "-2969"; chr14 rmsk exon 87789946 87791044 2131 - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1460"; repClass "LTR"; repEnd "1721"; repFamily "ERVL"; repLeft "374"; repStart "-3993"; chr14 rmsk exon 87791416 87791798 1457 - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1460"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "1"; repStart "-5293"; chr14 rmsk exon 87791850 87792168 1562 - . gene_id "ERVLB4_14q31.3d"; transcript_id "ERVLB4_14q31.3d"; locus "ERVLB4_14q31.3d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1460"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "3"; repStart "-84"; ### ERV316A3_14q31.3 ### chr14 rmsk gene 87867274 87869900 . - . gene_id "ERV316A3_14q31.3"; transcript_id "ERV316A3_14q31.3"; locus "ERV316A3_14q31.3"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2325"; model_cov "1960"; model_pct "37.5"; chr14 rmsk exon 87867274 87867609 1500 - . gene_id "ERV316A3_14q31.3"; transcript_id "ERV316A3_14q31.3"; locus "ERV316A3_14q31.3"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2325"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "110"; repStart "0"; chr14 rmsk exon 87867611 87869502 4459 - . gene_id "ERV316A3_14q31.3"; transcript_id "ERV316A3_14q31.3"; locus "ERV316A3_14q31.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2325"; repClass "LTR"; repEnd "1965"; repFamily "ERVL"; repLeft "5"; repStart "-3261"; chr14 rmsk exon 87869503 87869900 1086 - . gene_id "ERV316A3_14q31.3"; transcript_id "ERV316A3_14q31.3"; locus "ERV316A3_14q31.3"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2325"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "26"; repStart "0"; ### MER34B_14q31.3 ### chr14 rmsk gene 87961572 87962436 . + . gene_id "MER34B_14q31.3"; transcript_id "MER34B_14q31.3"; locus "MER34B_14q31.3"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0235"; model_cov "541"; model_pct "10.1"; chr14 rmsk exon 87961572 87961688 291 + . gene_id "MER34B_14q31.3"; transcript_id "MER34B_14q31.3"; locus "MER34B_14q31.3"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0235"; repClass "LTR"; repEnd "167"; repFamily "ERV1"; repLeft "-375"; repStart "53"; chr14 rmsk exon 87961733 87961857 316 + . gene_id "MER34B_14q31.3"; transcript_id "MER34B_14q31.3"; locus "MER34B_14q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0235"; repClass "LTR"; repEnd "-2691"; repFamily "ERV1"; repLeft "-8047"; repStart "-2811"; chr14 rmsk exon 87961884 87962216 911 + . gene_id "MER34B_14q31.3"; transcript_id "MER34B_14q31.3"; locus "MER34B_14q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0235"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "-4861"; repStart "183"; chr14 rmsk exon 87962328 87962436 373 + . gene_id "MER34B_14q31.3"; transcript_id "MER34B_14q31.3"; locus "MER34B_14q31.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0235"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-4701"; repStart "546"; ### ERVLE_14q31.3h ### chr14 rmsk gene 88028241 88034300 . - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3080"; model_cov "4352"; model_pct "76.8"; chr14 rmsk exon 88028241 88029084 560 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "5553"; repFamily "ERVL"; repLeft "4796"; repStart "-114"; chr14 rmsk exon 88029220 88029664 337 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "4391"; repFamily "ERVL"; repLeft "3817"; repStart "-1276"; chr14 rmsk exon 88029720 88030073 899 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "3684"; repFamily "ERVL"; repLeft "3317"; repStart "-1983"; chr14 rmsk exon 88030519 88030623 899 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "3316"; repFamily "ERVL"; repLeft "3202"; repStart "-2351"; chr14 rmsk exon 88030695 88031261 706 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "3095"; repFamily "ERVL"; repLeft "2554"; repStart "-2572"; chr14 rmsk exon 88031487 88031583 301 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "2355"; repFamily "ERVL"; repLeft "2259"; repStart "-3312"; chr14 rmsk exon 88031743 88031887 1718 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "2173"; repFamily "ERVL"; repLeft "2026"; repStart "-3494"; chr14 rmsk exon 88032110 88032941 1718 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "2025"; repFamily "ERVL"; repLeft "1206"; repStart "-3642"; chr14 rmsk exon 88033419 88034300 1718 - . gene_id "ERVLE_14q31.3h"; transcript_id "ERVLE_14q31.3h"; locus "ERVLE_14q31.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3080"; repClass "LTR"; repEnd "1205"; repFamily "ERVL"; repLeft "268"; repStart "-4462"; ### HUERSP2_14q31.3 ### chr14 rmsk gene 88142424 88146832 . + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0110"; model_cov "2730"; model_pct "88.4"; chr14 rmsk exon 88142424 88143271 4831 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 88143272 88143395 492 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "-2968"; repStart "1"; chr14 rmsk exon 88143395 88144986 9382 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "1829"; repFamily "ERV1"; repLeft "-1259"; repStart "235"; chr14 rmsk exon 88144986 88145507 3725 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "1991"; repFamily "ERV1"; repLeft "-1097"; repStart "1471"; chr14 rmsk exon 88145500 88145937 1593 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2591"; chr14 rmsk exon 88145949 88146832 4427 + . gene_id "HUERSP2_14q31.3"; transcript_id "HUERSP2_14q31.3"; locus "HUERSP2_14q31.3"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0110"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_14q32.11 ### chr14 rmsk gene 89650032 89651323 . + . gene_id "ERVL_14q32.11"; transcript_id "ERVL_14q32.11"; locus "ERVL_14q32.11"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0376"; model_cov "589"; model_pct "10.2"; chr14 rmsk exon 89650032 89650233 787 + . gene_id "ERVL_14q32.11"; transcript_id "ERVL_14q32.11"; locus "ERVL_14q32.11"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0376"; repClass "LTR"; repEnd "284"; repFamily "ERVL"; repLeft "-130"; repStart "1"; chr14 rmsk exon 89650235 89650787 2883 + . gene_id "ERVL_14q32.11"; transcript_id "ERVL_14q32.11"; locus "ERVL_14q32.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0376"; repClass "LTR"; repEnd "4098"; repFamily "ERVL"; repLeft "-1659"; repStart "3587"; chr14 rmsk exon 89650904 89650998 1102 + . gene_id "ERVL_14q32.11"; transcript_id "ERVL_14q32.11"; locus "ERVL_14q32.11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0376"; repClass "LTR"; repEnd "4174"; repFamily "ERVL"; repLeft "-1583"; repStart "4096"; chr14 rmsk exon 89651147 89651323 1027 + . gene_id "ERVL_14q32.11"; transcript_id "ERVL_14q32.11"; locus "ERVL_14q32.11"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0376"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-48"; repStart "193"; ### MER41_14q32.11a ### chr14 rmsk gene 89684033 89685733 . + . gene_id "MER41_14q32.11a"; transcript_id "MER41_14q32.11a"; locus "MER41_14q32.11a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0443"; model_cov "1392"; model_pct "23.4"; chr14 rmsk exon 89684033 89684153 915 + . gene_id "MER41_14q32.11a"; transcript_id "MER41_14q32.11a"; locus "MER41_14q32.11a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0443"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "434"; chr14 rmsk exon 89684154 89684238 561 + . gene_id "MER41_14q32.11a"; transcript_id "MER41_14q32.11a"; locus "MER41_14q32.11a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0443"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chr14 rmsk exon 89684234 89685512 9043 + . gene_id "MER41_14q32.11a"; transcript_id "MER41_14q32.11a"; locus "MER41_14q32.11a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0443"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4639"; chr14 rmsk exon 89685514 89685733 1609 + . gene_id "MER41_14q32.11a"; transcript_id "MER41_14q32.11a"; locus "MER41_14q32.11a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0443"; repClass "LTR"; repEnd "226"; repFamily "ERV1"; repLeft "-328"; repStart "2"; ### ERV316A3_14q32.11a ### chr14 rmsk gene 89703089 89706122 . - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2328"; model_cov "1372"; model_pct "26.3"; chr14 rmsk exon 89703089 89703237 330 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "167"; repFamily "ERVL"; repLeft "13"; repStart "-328"; chr14 rmsk exon 89703743 89703792 498 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "5099"; repFamily "ERVL"; repLeft "5049"; repStart "-127"; chr14 rmsk exon 89704154 89704210 498 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "5005"; repStart "-178"; chr14 rmsk exon 89704506 89704607 498 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "5004"; repFamily "ERVL"; repLeft "4912"; repStart "-222"; chr14 rmsk exon 89704629 89705443 1925 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "4824"; repFamily "ERVL"; repLeft "4021"; repStart "-402"; chr14 rmsk exon 89705753 89706122 1258 - . gene_id "ERV316A3_14q32.11a"; transcript_id "ERV316A3_14q32.11a"; locus "ERV316A3_14q32.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2328"; repClass "LTR"; repEnd "4028"; repFamily "ERVL"; repLeft "3644"; repStart "-1198"; ### ERVLB4_14q32.11a ### chr14 rmsk gene 89743779 89746509 . + . gene_id "ERVLB4_14q32.11a"; transcript_id "ERVLB4_14q32.11a"; locus "ERVLB4_14q32.11a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1461"; model_cov "1811"; model_pct "31.7"; chr14 rmsk exon 89743779 89744254 1364 + . gene_id "ERVLB4_14q32.11a"; transcript_id "ERVLB4_14q32.11a"; locus "ERVLB4_14q32.11a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1461"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr14 rmsk exon 89744278 89746071 9658 + . gene_id "ERVLB4_14q32.11a"; transcript_id "ERVLB4_14q32.11a"; locus "ERVLB4_14q32.11a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1461"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3903"; chr14 rmsk exon 89746072 89746509 1159 + . gene_id "ERVLB4_14q32.11a"; transcript_id "ERVLB4_14q32.11a"; locus "ERVLB4_14q32.11a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1461"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_14q32.11 ### chr14 rmsk gene 90227625 90233938 . + . gene_id "HERVL_14q32.11"; transcript_id "HERVL_14q32.11"; locus "HERVL_14q32.11"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1107"; model_cov "5215"; model_pct "92.2"; chr14 rmsk exon 90227625 90229448 40678 + . gene_id "HERVL_14q32.11"; transcript_id "HERVL_14q32.11"; locus "HERVL_14q32.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1107"; repClass "LTR"; repEnd "2256"; repFamily "ERVL"; repLeft "-3398"; repStart "436"; chr14 rmsk exon 90229743 90232953 40678 + . gene_id "HERVL_14q32.11"; transcript_id "HERVL_14q32.11"; locus "HERVL_14q32.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1107"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "-234"; repStart "2257"; chr14 rmsk exon 90233251 90233487 40678 + . gene_id "HERVL_14q32.11"; transcript_id "HERVL_14q32.11"; locus "HERVL_14q32.11"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1107"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5421"; chr14 rmsk exon 90233488 90233938 3245 + . gene_id "HERVL_14q32.11"; transcript_id "HERVL_14q32.11"; locus "HERVL_14q32.11"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1107"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4B_14q32.11a ### chr14 rmsk gene 90238596 90240078 . + . gene_id "MER4B_14q32.11a"; transcript_id "MER4B_14q32.11a"; locus "MER4B_14q32.11a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0368"; model_cov "717"; model_pct "10.6"; chr14 rmsk exon 90238596 90239349 5468 + . gene_id "MER4B_14q32.11a"; transcript_id "MER4B_14q32.11a"; locus "MER4B_14q32.11a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0368"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 90239351 90240078 4725 + . gene_id "MER4B_14q32.11a"; transcript_id "MER4B_14q32.11a"; locus "MER4B_14q32.11a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0368"; repClass "LTR"; repEnd "719"; repFamily "ERV1"; repLeft "-6039"; repStart "2"; ### MER4B_14q32.11b ### chr14 rmsk gene 90240386 90249373 . + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0369"; model_cov "5075"; model_pct "75.1"; chr14 rmsk exon 90240386 90240779 4725 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "409"; repFamily "ERV1"; repLeft "-6349"; repStart "-135"; chr14 rmsk exon 90240784 90241730 3467 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "1328"; repFamily "ERV1"; repLeft "-5430"; repStart "420"; chr14 rmsk exon 90242033 90242873 3467 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "2153"; repFamily "ERV1"; repLeft "-4605"; repStart "1329"; chr14 rmsk exon 90243178 90243455 3467 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "2404"; repFamily "ERV1"; repLeft "-4354"; repStart "2154"; chr14 rmsk exon 90243910 90244657 3467 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "-3615"; repStart "2405"; chr14 rmsk exon 90244957 90245051 3467 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "3231"; repFamily "ERV1"; repLeft "-3527"; repStart "3144"; chr14 rmsk exon 90247014 90247700 4429 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "3903"; repFamily "ERV1"; repLeft "-2855"; repStart "3240"; chr14 rmsk exon 90248045 90249041 4429 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "4899"; repFamily "ERV1"; repLeft "-1859"; repStart "3904"; chr14 rmsk exon 90249298 90249373 4429 + . gene_id "MER4B_14q32.11b"; transcript_id "MER4B_14q32.11b"; locus "MER4B_14q32.11b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0369"; repClass "LTR"; repEnd "4966"; repFamily "ERV1"; repLeft "-1792"; repStart "4900"; ### MER41_14q32.11b ### chr14 rmsk gene 90472533 90477165 . + . gene_id "MER41_14q32.11b"; transcript_id "MER41_14q32.11b"; locus "MER41_14q32.11b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0444"; model_cov "5064"; model_pct "85.2"; chr14 rmsk exon 90472533 90472916 2694 + . gene_id "MER41_14q32.11b"; transcript_id "MER41_14q32.11b"; locus "MER41_14q32.11b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0444"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "296"; chr14 rmsk exon 90473385 90476737 12388 + . gene_id "MER41_14q32.11b"; transcript_id "MER41_14q32.11b"; locus "MER41_14q32.11b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0444"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "1276"; chr14 rmsk exon 90476738 90477165 2087 + . gene_id "MER41_14q32.11b"; transcript_id "MER41_14q32.11b"; locus "MER41_14q32.11b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0444"; repClass "LTR"; repEnd "395"; repFamily "ERV1"; repLeft "-159"; repStart "-79"; ### ERV316A3_14q32.11b ### chr14 rmsk gene 90878667 90879383 . + . gene_id "ERV316A3_14q32.11b"; transcript_id "ERV316A3_14q32.11b"; locus "ERV316A3_14q32.11b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2329"; model_cov "959"; model_pct "18.4"; chr14 rmsk exon 90878667 90879383 950 + . gene_id "ERV316A3_14q32.11b"; transcript_id "ERV316A3_14q32.11b"; locus "ERV316A3_14q32.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2329"; repClass "LTR"; repEnd "3164"; repFamily "ERVL"; repLeft "-2062"; repStart "2205"; ### HERVK11_14q32.11 ### chr14 rmsk gene 90951168 90954214 . + . gene_id "HERVK11_14q32.11"; transcript_id "HERVK11_14q32.11"; locus "HERVK11_14q32.11"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0085"; model_cov "1635"; model_pct "20.6"; chr14 rmsk exon 90951168 90951201 12504 + . gene_id "HERVK11_14q32.11"; transcript_id "HERVK11_14q32.11"; locus "HERVK11_14q32.11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0085"; repClass "LTR"; repEnd "6341"; repFamily "ERVK"; repLeft "-1612"; repStart "6317"; chr14 rmsk exon 90951502 90953100 12504 + . gene_id "HERVK11_14q32.11"; transcript_id "HERVK11_14q32.11"; locus "HERVK11_14q32.11"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0085"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6342"; chr14 rmsk exon 90953101 90954214 4791 + . gene_id "HERVK11_14q32.11"; transcript_id "HERVK11_14q32.11"; locus "HERVK11_14q32.11"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0085"; repClass "LTR"; repEnd "1263"; repFamily "ERVK"; repLeft "-3"; repStart "1"; ### ERVLB4_14q32.11b ### chr14 rmsk gene 91016539 91019592 . + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1462"; model_cov "1979"; model_pct "34.6"; chr14 rmsk exon 91016539 91016647 282 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "158"; repFamily "ERVL"; repLeft "-256"; repStart "40"; chr14 rmsk exon 91016650 91016688 305 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "3528"; repFamily "ERVL"; repLeft "-2186"; repStart "3490"; chr14 rmsk exon 91016687 91018315 10301 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "-294"; repStart "3772"; chr14 rmsk exon 91018316 91018904 2293 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr14 rmsk exon 91018905 91019171 10301 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5421"; chr14 rmsk exon 91019172 91019592 1448 + . gene_id "ERVLB4_14q32.11b"; transcript_id "ERVLB4_14q32.11b"; locus "ERVLB4_14q32.11b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1462"; repClass "LTR"; repEnd "417"; repFamily "ERVL"; repLeft "-47"; repStart "1"; ### ERV316A3_14q32.11c ### chr14 rmsk gene 91036521 91038059 . - . gene_id "ERV316A3_14q32.11c"; transcript_id "ERV316A3_14q32.11c"; locus "ERV316A3_14q32.11c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2330"; model_cov "578"; model_pct "11.1"; chr14 rmsk exon 91036521 91036983 1088 - . gene_id "ERV316A3_14q32.11c"; transcript_id "ERV316A3_14q32.11c"; locus "ERV316A3_14q32.11c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2330"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "81"; repStart "-1"; chr14 rmsk exon 91037495 91038059 594 - . gene_id "ERV316A3_14q32.11c"; transcript_id "ERV316A3_14q32.11c"; locus "ERV316A3_14q32.11c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2330"; repClass "LTR"; repEnd "1264"; repFamily "ERVL"; repLeft "686"; repStart "-3962"; ### HERVW_14q32.11 ### chr14 rmsk gene 91225665 91226868 . - . gene_id "HERVW_14q32.11"; transcript_id "HERVW_14q32.11"; locus "HERVW_14q32.11"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0256"; model_cov "874"; model_pct "10.1"; chr14 rmsk exon 91225665 91225981 2633 - . gene_id "HERVW_14q32.11"; transcript_id "HERVW_14q32.11"; locus "HERVW_14q32.11"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0256"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr14 rmsk exon 91225982 91226273 2434 - . gene_id "HERVW_14q32.11"; transcript_id "HERVW_14q32.11"; locus "HERVW_14q32.11"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0256"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr14 rmsk exon 91226296 91226868 4621 - . gene_id "HERVW_14q32.11"; transcript_id "HERVW_14q32.11"; locus "HERVW_14q32.11"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0256"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5436"; repStart "-2607"; ### MER4_14q32.12a ### chr14 rmsk gene 91594660 91595344 . - . gene_id "MER4_14q32.12a"; transcript_id "MER4_14q32.12a"; locus "MER4_14q32.12a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0673"; model_cov "1134"; model_pct "17.2"; chr14 rmsk exon 91594660 91595290 6286 - . gene_id "MER4_14q32.12a"; transcript_id "MER4_14q32.12a"; locus "MER4_14q32.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0673"; repClass "LTR"; repEnd "6493"; repFamily "ERV1"; repLeft "5377"; repStart "-105"; chr14 rmsk exon 91595333 91595344 12052 - . gene_id "MER4_14q32.12a"; transcript_id "MER4_14q32.12a"; locus "MER4_14q32.12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0673"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "5822"; repStart "-758"; ### MER4_14q32.12b ### chr14 rmsk gene 91595467 91599986 . - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0674"; model_cov "2667"; model_pct "40.4"; chr14 rmsk exon 91595467 91596212 12052 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0674"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "4566"; repStart "-758"; chr14 rmsk exon 91596503 91596889 12052 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0674"; repClass "LTR"; repEnd "5084"; repFamily "ERV1"; repLeft "4726"; repStart "-1514"; chr14 rmsk exon 91597190 91598525 12052 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0674"; repClass "LTR"; repEnd "4725"; repFamily "ERV1"; repLeft "3882"; repStart "-1873"; chr14 rmsk exon 91599054 91599219 1126 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0674"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "1"; repStart "-6405"; chr14 rmsk exon 91599223 91599278 3200 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0674"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "428"; repStart "0"; chr14 rmsk exon 91599565 91599986 3200 - . gene_id "MER4_14q32.12b"; transcript_id "MER4_14q32.12b"; locus "MER4_14q32.12b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0674"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "-45"; ### LTR57_14q32.12 ### chr14 rmsk gene 91678258 91679170 . + . gene_id "LTR57_14q32.12"; transcript_id "LTR57_14q32.12"; locus "LTR57_14q32.12"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0146"; model_cov "913"; model_pct "17.1"; chr14 rmsk exon 91678258 91679170 4643 + . gene_id "LTR57_14q32.12"; transcript_id "LTR57_14q32.12"; locus "LTR57_14q32.12"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0146"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "-3748"; repStart "682"; ### PRIMA41_14q32.12 ### chr14 rmsk gene 91679851 91683021 . + . gene_id "PRIMA41_14q32.12"; transcript_id "PRIMA41_14q32.12"; locus "PRIMA41_14q32.12"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0112"; model_cov "1554"; model_pct "20.0"; chr14 rmsk exon 91679851 91679961 371 + . gene_id "PRIMA41_14q32.12"; transcript_id "PRIMA41_14q32.12"; locus "PRIMA41_14q32.12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0112"; repClass "LTR"; repEnd "3471"; repFamily "ERV1"; repLeft "-4285"; repStart "3422"; chr14 rmsk exon 91681381 91681850 453 + . gene_id "PRIMA41_14q32.12"; transcript_id "PRIMA41_14q32.12"; locus "PRIMA41_14q32.12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0112"; repClass "LTR"; repEnd "6104"; repFamily "ERV1"; repLeft "-1652"; repStart "5623"; chr14 rmsk exon 91682014 91683021 2023 + . gene_id "PRIMA41_14q32.12"; transcript_id "PRIMA41_14q32.12"; locus "PRIMA41_14q32.12"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0112"; repClass "LTR"; repEnd "7341"; repFamily "ERV1"; repLeft "-415"; repStart "6317"; ### ERVLE_14q32.12a ### chr14 rmsk gene 91744758 91745958 . + . gene_id "ERVLE_14q32.12a"; transcript_id "ERVLE_14q32.12a"; locus "ERVLE_14q32.12a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3083"; model_cov "818"; model_pct "14.4"; chr14 rmsk exon 91744758 91744859 3430 + . gene_id "ERVLE_14q32.12a"; transcript_id "ERVLE_14q32.12a"; locus "ERVLE_14q32.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3083"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "-730"; repStart "4848"; chr14 rmsk exon 91745150 91745812 3430 + . gene_id "ERVLE_14q32.12a"; transcript_id "ERVLE_14q32.12a"; locus "ERVLE_14q32.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3083"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4938"; chr14 rmsk exon 91745813 91745958 713 + . gene_id "ERVLE_14q32.12a"; transcript_id "ERVLE_14q32.12a"; locus "ERVLE_14q32.12a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3083"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-517"; repStart "1"; ### HERVH_14q32.12a ### chr14 rmsk gene 92041755 92049821 . - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1038"; model_cov "7216"; model_pct "93.6"; chr14 rmsk exon 92041755 92042124 2176 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 92042125 92042636 27116 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7204"; repStart "0"; chr14 rmsk exon 92042978 92046447 27116 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "7203"; repFamily "ERV1"; repLeft "3804"; repStart "-510"; chr14 rmsk exon 92046442 92049271 17678 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "800"; repStart "-4126"; chr14 rmsk exon 92049242 92049745 1785 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "1"; repStart "-7191"; chr14 rmsk exon 92049746 92049821 651 - . gene_id "HERVH_14q32.12a"; transcript_id "HERVH_14q32.12a"; locus "HERVH_14q32.12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1038"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "375"; repStart "0"; ### HERVIP10F_14q32.12 ### chr14 rmsk gene 92625544 92628166 . - . gene_id "HERVIP10F_14q32.12"; transcript_id "HERVIP10F_14q32.12"; locus "HERVIP10F_14q32.12"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0095"; model_cov "2350"; model_pct "30.4"; chr14 rmsk exon 92625544 92627789 7512 - . gene_id "HERVIP10F_14q32.12"; transcript_id "HERVIP10F_14q32.12"; locus "HERVIP10F_14q32.12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0095"; repClass "LTR"; repEnd "2328"; repFamily "ERV1"; repLeft "-22"; repStart "-5409"; chr14 rmsk exon 92627814 92628166 1089 - . gene_id "HERVIP10F_14q32.12"; transcript_id "HERVIP10F_14q32.12"; locus "HERVIP10F_14q32.12"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0095"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "164"; repStart "0"; ### HERVH_14q32.12b ### chr14 rmsk gene 92759739 92763541 . + . gene_id "HERVH_14q32.12b"; transcript_id "HERVH_14q32.12b"; locus "HERVH_14q32.12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1039"; model_cov "3259"; model_pct "42.3"; chr14 rmsk exon 92759739 92760205 3078 + . gene_id "HERVH_14q32.12b"; transcript_id "HERVH_14q32.12b"; locus "HERVH_14q32.12b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1039"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 92760206 92763541 10581 + . gene_id "HERVH_14q32.12b"; transcript_id "HERVH_14q32.12b"; locus "HERVH_14q32.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1039"; repClass "LTR"; repEnd "3260"; repFamily "ERV1"; repLeft "-4453"; repStart "1"; ### HERVL_14q32.12 ### chr14 rmsk gene 93357289 93361341 . + . gene_id "HERVL_14q32.12"; transcript_id "HERVL_14q32.12"; locus "HERVL_14q32.12"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1108"; model_cov "3033"; model_pct "53.6"; chr14 rmsk exon 93357289 93357714 3174 + . gene_id "HERVL_14q32.12"; transcript_id "HERVL_14q32.12"; locus "HERVL_14q32.12"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1108"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-100"; chr14 rmsk exon 93357959 93358030 339 + . gene_id "HERVL_14q32.12"; transcript_id "HERVL_14q32.12"; locus "HERVL_14q32.12"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1108"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "376"; chr14 rmsk exon 93358031 93360931 23740 + . gene_id "HERVL_14q32.12"; transcript_id "HERVL_14q32.12"; locus "HERVL_14q32.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1108"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2692"; repStart "1"; chr14 rmsk exon 93361242 93361341 23740 + . gene_id "HERVL_14q32.12"; transcript_id "HERVL_14q32.12"; locus "HERVL_14q32.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1108"; repClass "LTR"; repEnd "3035"; repFamily "ERVL"; repLeft "-2619"; repStart "2963"; ### HERVH_14q32.12c ### chr14 rmsk gene 93559392 93564970 . - . gene_id "HERVH_14q32.12c"; transcript_id "HERVH_14q32.12c"; locus "HERVH_14q32.12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1040"; model_cov "4683"; model_pct "60.7"; chr14 rmsk exon 93559392 93559839 3307 - . gene_id "HERVH_14q32.12c"; transcript_id "HERVH_14q32.12c"; locus "HERVH_14q32.12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1040"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 93559840 93564517 27611 - . gene_id "HERVH_14q32.12c"; transcript_id "HERVH_14q32.12c"; locus "HERVH_14q32.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1040"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3095"; repStart "0"; chr14 rmsk exon 93564506 93564571 510 - . gene_id "HERVH_14q32.12c"; transcript_id "HERVH_14q32.12c"; locus "HERVH_14q32.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1040"; repClass "LTR"; repEnd "66"; repFamily "ERV1"; repLeft "1"; repStart "-7647"; chr14 rmsk exon 93564574 93564970 2701 - . gene_id "HERVH_14q32.12c"; transcript_id "HERVH_14q32.12c"; locus "HERVH_14q32.12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1040"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_14q32.12b ### chr14 rmsk gene 93792638 93794584 . + . gene_id "ERVLE_14q32.12b"; transcript_id "ERVLE_14q32.12b"; locus "ERVLE_14q32.12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3084"; model_cov "1247"; model_pct "22.0"; chr14 rmsk exon 93792638 93793042 611 + . gene_id "ERVLE_14q32.12b"; transcript_id "ERVLE_14q32.12b"; locus "ERVLE_14q32.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3084"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "-4137"; repStart "1099"; chr14 rmsk exon 93793339 93793445 611 + . gene_id "ERVLE_14q32.12b"; transcript_id "ERVLE_14q32.12b"; locus "ERVLE_14q32.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3084"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "-4046"; repStart "1531"; chr14 rmsk exon 93793552 93793855 599 + . gene_id "ERVLE_14q32.12b"; transcript_id "ERVLE_14q32.12b"; locus "ERVLE_14q32.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3084"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "-2010"; repStart "3348"; chr14 rmsk exon 93794127 93794584 952 + . gene_id "ERVLE_14q32.12b"; transcript_id "ERVLE_14q32.12b"; locus "ERVLE_14q32.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3084"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "-660"; repStart "4590"; ### MER41_14q32.12 ### chr14 rmsk gene 94089107 94092704 . - . gene_id "MER41_14q32.12"; transcript_id "MER41_14q32.12"; locus "MER41_14q32.12"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0447"; model_cov "2414"; model_pct "40.6"; chr14 rmsk exon 94089107 94089729 4209 - . gene_id "MER41_14q32.12"; transcript_id "MER41_14q32.12"; locus "MER41_14q32.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0447"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 94089730 94091842 16010 - . gene_id "MER41_14q32.12"; transcript_id "MER41_14q32.12"; locus "MER41_14q32.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0447"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3772"; repStart "0"; chr14 rmsk exon 94092156 94092231 16010 - . gene_id "MER41_14q32.12"; transcript_id "MER41_14q32.12"; locus "MER41_14q32.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0447"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "3696"; repStart "-2175"; chr14 rmsk exon 94092541 94092704 16010 - . gene_id "MER41_14q32.12"; transcript_id "MER41_14q32.12"; locus "MER41_14q32.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0447"; repClass "LTR"; repEnd "3695"; repFamily "ERV1"; repLeft "3530"; repStart "-2251"; ### MER41_14q32.13 ### chr14 rmsk gene 95275153 95281858 . + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0450"; model_cov "5304"; model_pct "89.2"; chr14 rmsk exon 95275153 95275655 4082 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0450"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "-130"; repStart "1"; chr14 rmsk exon 95275963 95276086 4082 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0450"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-1"; repStart "505"; chr14 rmsk exon 95276088 95277616 12029 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0450"; repClass "LTR"; repEnd "1616"; repFamily "ERV1"; repLeft "-4330"; repStart "2"; chr14 rmsk exon 95277927 95279502 22896 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0450"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "-2716"; repStart "1617"; chr14 rmsk exon 95279810 95281127 22896 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0450"; repClass "LTR"; repEnd "4581"; repFamily "ERV1"; repLeft "-1365"; repStart "3231"; chr14 rmsk exon 95281128 95281858 4015 + . gene_id "MER41_14q32.13"; transcript_id "MER41_14q32.13"; locus "MER41_14q32.13"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0450"; repClass "LTR"; repEnd "5752"; repFamily "ERV1"; repLeft "-194"; repStart "5025"; ### HERVH_14q32.2a ### chr14 rmsk gene 95973031 95978860 . + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1041"; model_cov "5116"; model_pct "66.3"; chr14 rmsk exon 95973031 95973430 2733 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 95973433 95976369 19063 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr14 rmsk exon 95976349 95977202 6238 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr14 rmsk exon 95977205 95977867 4476 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr14 rmsk exon 95977869 95978084 1399 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 95978085 95978461 2420 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr14 rmsk exon 95978462 95978860 2905 + . gene_id "HERVH_14q32.2a"; transcript_id "HERVH_14q32.2a"; locus "HERVH_14q32.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1041"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFRD_14q32.2 ### chr14 rmsk gene 96112157 96118463 . - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0153"; model_cov "4182"; model_pct "58.0"; chr14 rmsk exon 96112157 96112704 3533 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0153"; repClass "LTR"; repEnd "570"; repFamily "ERV1"; repLeft "28"; repStart "-164"; chr14 rmsk exon 96112705 96113708 6943 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0153"; repClass "LTR"; repEnd "7202"; repFamily "ERV1"; repLeft "6183"; repStart "-3"; chr14 rmsk exon 96114014 96115330 6596 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0153"; repClass "LTR"; repEnd "4101"; repFamily "ERV1"; repLeft "2788"; repStart "-3104"; chr14 rmsk exon 96115321 96115785 7631 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0153"; repClass "LTR"; repEnd "1858"; repFamily "ERV1"; repLeft "1383"; repStart "-5347"; chr14 rmsk exon 96116427 96117748 7631 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0153"; repClass "LTR"; repEnd "1382"; repFamily "ERV1"; repLeft "7"; repStart "-5823"; chr14 rmsk exon 96117749 96118463 4471 - . gene_id "HERVFRD_14q32.2"; transcript_id "HERVFRD_14q32.2"; locus "HERVFRD_14q32.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0153"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "-12"; ### ERV316A3_14q32.2a ### chr14 rmsk gene 96635852 96639416 . - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2331"; model_cov "2259"; model_pct "43.2"; chr14 rmsk exon 96635852 96636192 1234 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "4"; repStart "-95"; chr14 rmsk exon 96636197 96636501 829 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4913"; repStart "-1"; chr14 rmsk exon 96636537 96636826 2913 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "4830"; repFamily "ERVL"; repLeft "4530"; repStart "-396"; chr14 rmsk exon 96637203 96638053 2913 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "4529"; repFamily "ERVL"; repLeft "3609"; repStart "-697"; chr14 rmsk exon 96638152 96638228 290 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "1369"; repFamily "ERVL"; repLeft "1295"; repStart "-3857"; chr14 rmsk exon 96638516 96638852 1603 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "1290"; repFamily "ERVL"; repLeft "940"; repStart "-3936"; chr14 rmsk exon 96639144 96639416 1603 - . gene_id "ERV316A3_14q32.2a"; transcript_id "ERV316A3_14q32.2a"; locus "ERV316A3_14q32.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2331"; repClass "LTR"; repEnd "939"; repFamily "ERVL"; repLeft "636"; repStart "-4287"; ### HERVH_14q32.2b ### chr14 rmsk gene 98446793 98452574 . - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1042"; model_cov "5014"; model_pct "65.0"; chr14 rmsk exon 98446793 98447205 2732 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 98447206 98447583 2233 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr14 rmsk exon 98447584 98447800 1200 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr14 rmsk exon 98447802 98449457 6114 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "4563"; repStart "-1394"; chr14 rmsk exon 98449455 98451690 13665 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "793"; repStart "-4728"; chr14 rmsk exon 98451745 98452213 2744 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr14 rmsk exon 98452222 98452574 1962 - . gene_id "HERVH_14q32.2b"; transcript_id "HERVH_14q32.2b"; locus "HERVH_14q32.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1042"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; ### HERVH_14q32.2c ### chr14 rmsk gene 98985205 98992939 . + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1043"; model_cov "6870"; model_pct "89.1"; chr14 rmsk exon 98985205 98985684 3512 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr14 rmsk exon 98985687 98988616 20707 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr14 rmsk exon 98988596 98988742 907 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr14 rmsk exon 98988733 98989235 3397 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr14 rmsk exon 98989238 98992459 25639 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4488"; chr14 rmsk exon 98992460 98992939 3485 + . gene_id "HERVH_14q32.2c"; transcript_id "HERVH_14q32.2c"; locus "HERVH_14q32.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1043"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_14q32.2b ### chr14 rmsk gene 99029152 99030832 . + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2332"; model_cov "1132"; model_pct "21.7"; chr14 rmsk exon 99029152 99029828 1380 + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2332"; repClass "LTR"; repEnd "3381"; repFamily "ERVL"; repLeft "-1845"; repStart "2685"; chr14 rmsk exon 99029847 99029940 408 + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2332"; repClass "LTR"; repEnd "3649"; repFamily "ERVL"; repLeft "-1577"; repStart "3545"; chr14 rmsk exon 99029955 99030069 360 + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2332"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1417"; repStart "3686"; chr14 rmsk exon 99030222 99030426 383 + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2332"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4967"; chr14 rmsk exon 99030481 99030832 382 + . gene_id "ERV316A3_14q32.2b"; transcript_id "ERV316A3_14q32.2b"; locus "ERV316A3_14q32.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2332"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-20"; repStart "40"; ### MER41_14q32.2 ### chr14 rmsk gene 99901390 99906744 . - . gene_id "MER41_14q32.2"; transcript_id "MER41_14q32.2"; locus "MER41_14q32.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0451"; model_cov "3143"; model_pct "52.9"; chr14 rmsk exon 99901390 99901927 4068 - . gene_id "MER41_14q32.2"; transcript_id "MER41_14q32.2"; locus "MER41_14q32.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0451"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14 rmsk exon 99901928 99903785 11672 - . gene_id "MER41_14q32.2"; transcript_id "MER41_14q32.2"; locus "MER41_14q32.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0451"; repClass "LTR"; repEnd "4834"; repFamily "ERV1"; repLeft "2833"; repStart "-1112"; chr14 rmsk exon 99904083 99906111 10261 - . gene_id "MER41_14q32.2"; transcript_id "MER41_14q32.2"; locus "MER41_14q32.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0451"; repClass "LTR"; repEnd "3359"; repFamily "ERV1"; repLeft "2217"; repStart "-2587"; chr14 rmsk exon 99906206 99906744 4256 - . gene_id "MER41_14q32.2"; transcript_id "MER41_14q32.2"; locus "MER41_14q32.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0451"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "1"; repStart "-9"; ### MER4_14q32.2 ### chr14 rmsk gene 100000066 100007471 . - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0676"; model_cov "6844"; model_pct "100.0"; chr14 rmsk exon 100000066 100000340 3170 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0676"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "185"; repStart "0"; chr14 rmsk exon 100000633 100000817 3170 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0676"; repClass "LTR"; repEnd "184"; repFamily "ERV1"; repLeft "2"; repStart "-288"; chr14 rmsk exon 100000818 100003408 17319 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "2300"; repStart "0"; chr14 rmsk exon 100003719 100003868 17319 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "3971"; repFamily "ERV1"; repLeft "3837"; repStart "-2627"; chr14 rmsk exon 100003868 100003922 3947 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3632"; repStart "-2917"; chr14 rmsk exon 100004208 100005066 3947 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "3631"; repFamily "ERV1"; repLeft "2738"; repStart "-2967"; chr14 rmsk exon 100005307 100005475 1201 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2329"; repStart "-4103"; chr14 rmsk exon 100005502 100005630 5418 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "1309"; repFamily "ERV1"; repLeft "1161"; repStart "-5289"; chr14 rmsk exon 100005671 100006283 5418 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "1160"; repFamily "ERV1"; repLeft "479"; repStart "-5438"; chr14 rmsk exon 100006586 100007024 5418 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0676"; repClass "LTR"; repEnd "478"; repFamily "ERV1"; repLeft "3"; repStart "-6120"; chr14 rmsk exon 100007028 100007471 3124 - . gene_id "MER4_14q32.2"; transcript_id "MER4_14q32.2"; locus "MER4_14q32.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0676"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_14q32.2a ### chr14 rmsk gene 100650238 100653268 . - . gene_id "ERVLE_14q32.2a"; transcript_id "ERVLE_14q32.2a"; locus "ERVLE_14q32.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3089"; model_cov "2540"; model_pct "44.8"; chr14 rmsk exon 100650238 100650501 1063 - . gene_id "ERVLE_14q32.2a"; transcript_id "ERVLE_14q32.2a"; locus "ERVLE_14q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3089"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "4806"; repStart "-606"; chr14 rmsk exon 100650496 100651757 3733 - . gene_id "ERVLE_14q32.2a"; transcript_id "ERVLE_14q32.2a"; locus "ERVLE_14q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3089"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "1047"; repStart "-3334"; chr14 rmsk exon 100652300 100653268 1790 - . gene_id "ERVLE_14q32.2a"; transcript_id "ERVLE_14q32.2a"; locus "ERVLE_14q32.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3089"; repClass "LTR"; repEnd "1042"; repFamily "ERVL"; repLeft "43"; repStart "-4625"; ### ERVLE_14q32.2b ### chr14 rmsk gene 100743978 100751780 . + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3090"; model_cov "3352"; model_pct "59.1"; chr14 rmsk exon 100743978 100745060 10406 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "2939"; repFamily "ERVL"; repLeft "-2728"; repStart "1863"; chr14 rmsk exon 100747253 100747599 10406 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "3273"; repFamily "ERVL"; repLeft "-2394"; repStart "2940"; chr14 rmsk exon 100747901 100748100 10406 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "3454"; repFamily "ERVL"; repLeft "-2213"; repStart "3274"; chr14 rmsk exon 100748410 100749318 10406 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "4379"; repFamily "ERVL"; repLeft "-1288"; repStart "3455"; chr14 rmsk exon 100749326 100749350 2601 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-821"; repStart "4827"; chr14 rmsk exon 100750400 100751182 2601 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4847"; chr14 rmsk exon 100751185 100751780 1811 + . gene_id "ERVLE_14q32.2b"; transcript_id "ERVLE_14q32.2b"; locus "ERVLE_14q32.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3090"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERV316A3_14q32.2c ### chr14 rmsk gene 100752664 100753660 . - . gene_id "ERV316A3_14q32.2c"; transcript_id "ERV316A3_14q32.2c"; locus "ERV316A3_14q32.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2333"; model_cov "565"; model_pct "10.8"; chr14 rmsk exon 100752664 100753082 1231 - . gene_id "ERV316A3_14q32.2c"; transcript_id "ERV316A3_14q32.2c"; locus "ERV316A3_14q32.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2333"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "37"; repStart "0"; chr14 rmsk exon 100753097 100753660 1811 - . gene_id "ERV316A3_14q32.2c"; transcript_id "ERV316A3_14q32.2c"; locus "ERV316A3_14q32.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2333"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4661"; repStart "0"; ### ERV316A3_14q32.2d ### chr14 rmsk gene 100762499 100766490 . - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2334"; model_cov "1423"; model_pct "27.2"; chr14 rmsk exon 100762499 100762922 706 - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2334"; repClass "LTR"; repEnd "4423"; repFamily "ERVL"; repLeft "4003"; repStart "-803"; chr14 rmsk exon 100764826 100764933 326 - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2334"; repClass "LTR"; repEnd "3747"; repFamily "ERVL"; repLeft "3646"; repStart "-1479"; chr14 rmsk exon 100764935 100765310 1051 - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2334"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "3524"; repStart "-1317"; chr14 rmsk exon 100765570 100766051 1040 - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2334"; repClass "LTR"; repEnd "753"; repFamily "ERVL"; repLeft "236"; repStart "-4473"; chr14 rmsk exon 100766053 100766490 1024 - . gene_id "ERV316A3_14q32.2d"; transcript_id "ERV316A3_14q32.2d"; locus "ERV316A3_14q32.2d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2334"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER34B_14q32.31 ### chr14 rmsk gene 101089848 101096984 . + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0236"; model_cov "3466"; model_pct "64.7"; chr14 rmsk exon 101089848 101090067 548 + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0236"; repClass "LTR"; repEnd "-581"; repFamily "ERV1"; repLeft "-5937"; repStart "-828"; chr14 rmsk exon 101091006 101091502 1062 + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0236"; repClass "LTR"; repEnd "1502"; repFamily "ERV1"; repLeft "-3854"; repStart "982"; chr14 rmsk exon 101092166 101093331 2923 + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0236"; repClass "LTR"; repEnd "3189"; repFamily "ERV1"; repLeft "-2167"; repStart "1627"; chr14 rmsk exon 101093618 101094335 2923 + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0236"; repClass "LTR"; repEnd "4150"; repFamily "ERV1"; repLeft "-1206"; repStart "3610"; chr14 rmsk exon 101096405 101096984 1025 + . gene_id "MER34B_14q32.31"; transcript_id "MER34B_14q32.31"; locus "MER34B_14q32.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0236"; repClass "LTR"; repEnd "5153"; repFamily "ERV1"; repLeft "-203"; repStart "4556"; ### HERVH_14q32.31a ### chr14 rmsk gene 101305254 101311247 . - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1044"; model_cov "5135"; model_pct "66.6"; chr14 rmsk exon 101305254 101305652 2607 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14 rmsk exon 101305653 101306045 2752 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr14 rmsk exon 101306046 101306268 1462 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5594"; repStart "-1894"; chr14 rmsk exon 101306266 101307424 8177 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3995"; repStart "-2564"; chr14 rmsk exon 101307447 101308049 3708 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3140"; repStart "-3977"; chr14 rmsk exon 101308020 101310323 14063 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "3004"; repFamily "ERV1"; repLeft "691"; repStart "-4709"; chr14 rmsk exon 101310378 101310846 3119 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr14 rmsk exon 101310849 101311247 2481 - . gene_id "HERVH_14q32.31a"; transcript_id "HERVH_14q32.31a"; locus "HERVH_14q32.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1044"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVIP10F_14q32.31 ### chr14 rmsk gene 101315699 101324134 . + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0096"; model_cov "8987"; model_pct "100.0"; chr14 rmsk exon 101315699 101316286 3106 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; chr14 rmsk exon 101316302 101317099 1379 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "877"; repFamily "ERV1"; repLeft "-6860"; repStart "135"; chr14 rmsk exon 101317141 101317686 2458 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "1963"; repFamily "ERV1"; repLeft "-5774"; repStart "1424"; chr14 rmsk exon 101317664 101318466 3849 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "3002"; repFamily "ERV1"; repLeft "-4735"; repStart "2201"; chr14 rmsk exon 101318466 101319402 5627 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "4521"; repFamily "ERV1"; repLeft "-3216"; repStart "3583"; chr14 rmsk exon 101319400 101323477 15999 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "1768"; chr14 rmsk exon 101323524 101324134 3088 + . gene_id "HERVIP10F_14q32.31"; transcript_id "HERVIP10F_14q32.31"; locus "HERVIP10F_14q32.31"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0096"; repClass "LTR"; repEnd "582"; repFamily "ERV1"; repLeft "-27"; repStart "1"; ### ERV316A3_14q32.31a ### chr14 rmsk gene 101508826 101512013 . + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2335"; model_cov "2133"; model_pct "40.8"; chr14 rmsk exon 101508826 101509217 649 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "21"; chr14 rmsk exon 101509221 101509402 344 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "423"; repFamily "ERVL"; repLeft "-4803"; repStart "233"; chr14 rmsk exon 101509615 101509800 516 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "908"; repFamily "ERVL"; repLeft "-4318"; repStart "709"; chr14 rmsk exon 101509953 101511021 1764 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3259"; repStart "885"; chr14 rmsk exon 101511051 101511454 1001 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "2496"; repFamily "ERVL"; repLeft "-2730"; repStart "2069"; chr14 rmsk exon 101511477 101511700 739 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "5212"; repFamily "ERVL"; repLeft "-14"; repStart "4977"; chr14 rmsk exon 101511742 101512013 962 + . gene_id "ERV316A3_14q32.31a"; transcript_id "ERV316A3_14q32.31a"; locus "ERV316A3_14q32.31a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2335"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-94"; repStart "73"; ### ERV316A3_14q32.31b ### chr14 rmsk gene 101590543 101596912 . + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2336"; model_cov "4690"; model_pct "89.7"; chr14 rmsk exon 101590543 101590693 357 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "286"; chr14 rmsk exon 101591048 101591267 270 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "931"; repFamily "ERVL"; repLeft "-4295"; repStart "673"; chr14 rmsk exon 101591298 101592166 8347 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "1712"; repFamily "ERVL"; repLeft "-3514"; repStart "785"; chr14 rmsk exon 101592469 101594867 8347 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "4133"; repFamily "ERVL"; repLeft "-1093"; repStart "1713"; chr14 rmsk exon 101595230 101596323 8347 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "-7"; repStart "4134"; chr14 rmsk exon 101596519 101596912 479 + . gene_id "ERV316A3_14q32.31b"; transcript_id "ERV316A3_14q32.31b"; locus "ERV316A3_14q32.31b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2336"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "55"; ### PABLA_14q32.31 ### chr14 rmsk gene 101676420 101677554 . - . gene_id "PABLA_14q32.31"; transcript_id "PABLA_14q32.31"; locus "PABLA_14q32.31"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0129"; model_cov "1169"; model_pct "23.3"; chr14 rmsk exon 101676420 101677554 7826 - . gene_id "PABLA_14q32.31"; transcript_id "PABLA_14q32.31"; locus "PABLA_14q32.31"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0129"; repClass "LTR"; repEnd "4770"; repFamily "ERV1"; repLeft "3601"; repStart "-245"; ### MER4_14q32.31a ### chr14 rmsk gene 101678431 101681932 . - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0678"; model_cov "2356"; model_pct "35.7"; chr14 rmsk exon 101678431 101679440 19529 - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0678"; repClass "LTR"; repEnd "5107"; repFamily "ERV1"; repLeft "4085"; repStart "-1491"; chr14 rmsk exon 101679733 101680211 19529 - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0678"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "3467"; repStart "-2514"; chr14 rmsk exon 101680509 101680738 19529 - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0678"; repClass "LTR"; repEnd "3466"; repFamily "ERV1"; repLeft "3283"; repStart "-3132"; chr14 rmsk exon 101681082 101681175 19529 - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0678"; repClass "LTR"; repEnd "3282"; repFamily "ERV1"; repLeft "3221"; repStart "-3316"; chr14 rmsk exon 101681482 101681932 19529 - . gene_id "MER4_14q32.31a"; transcript_id "MER4_14q32.31a"; locus "MER4_14q32.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0678"; repClass "LTR"; repEnd "3220"; repFamily "ERV1"; repLeft "2747"; repStart "-3378"; ### MER4_14q32.31b ### chr14 rmsk gene 101682157 101685521 . - . gene_id "MER4_14q32.31b"; transcript_id "MER4_14q32.31b"; locus "MER4_14q32.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0679"; model_cov "2745"; model_pct "41.6"; chr14 rmsk exon 101682157 101684761 19529 - . gene_id "MER4_14q32.31b"; transcript_id "MER4_14q32.31b"; locus "MER4_14q32.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0679"; repClass "LTR"; repEnd "3220"; repFamily "ERV1"; repLeft "475"; repStart "-3378"; chr14 rmsk exon 101684765 101685037 3326 - . gene_id "MER4_14q32.31b"; transcript_id "MER4_14q32.31b"; locus "MER4_14q32.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0679"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "188"; repStart "0"; chr14 rmsk exon 101685335 101685521 3326 - . gene_id "MER4_14q32.31b"; transcript_id "MER4_14q32.31b"; locus "MER4_14q32.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0679"; repClass "LTR"; repEnd "187"; repFamily "ERV1"; repLeft "1"; repStart "-285"; ### HERVFH21_14q32.31a ### chr14 rmsk gene 102233835 102239533 . + . gene_id "HERVFH21_14q32.31a"; transcript_id "HERVFH21_14q32.31a"; locus "HERVFH21_14q32.31a"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0032"; model_cov "5331"; model_pct "81.7"; chr14 rmsk exon 102233835 102234169 1931 + . gene_id "HERVFH21_14q32.31a"; transcript_id "HERVFH21_14q32.31a"; locus "HERVFH21_14q32.31a"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0032"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "173"; chr14 rmsk exon 102234170 102239533 26826 + . gene_id "HERVFH21_14q32.31a"; transcript_id "HERVFH21_14q32.31a"; locus "HERVFH21_14q32.31a"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0032"; repClass "LTR"; repEnd "5332"; repFamily "ERV1"; repLeft "-1197"; repStart "1"; ### HERVH_14q32.31b ### chr14 rmsk gene 102239957 102245769 . + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1045"; model_cov "5305"; model_pct "68.8"; chr14 rmsk exon 102239957 102240323 2142 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr14 rmsk exon 102240324 102240748 1068 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr14 rmsk exon 102240808 102243039 12744 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "802"; chr14 rmsk exon 102243019 102244960 7184 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4199"; chr14 rmsk exon 102244969 102245402 2747 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr14 rmsk exon 102245403 102245769 2040 + . gene_id "HERVH_14q32.31b"; transcript_id "HERVH_14q32.31b"; locus "HERVH_14q32.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1045"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFH21_14q32.31b ### chr14 rmsk gene 102246200 102248497 . + . gene_id "HERVFH21_14q32.31b"; transcript_id "HERVFH21_14q32.31b"; locus "HERVFH21_14q32.31b"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0033"; model_cov "2875"; model_pct "44.0"; chr14 rmsk exon 102246200 102246391 276 + . gene_id "HERVFH21_14q32.31b"; transcript_id "HERVFH21_14q32.31b"; locus "HERVFH21_14q32.31b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0033"; repClass "LTR"; repEnd "4689"; repFamily "ERV1"; repLeft "-1840"; repStart "4498"; chr14 rmsk exon 102246371 102248154 7587 + . gene_id "HERVFH21_14q32.31b"; transcript_id "HERVFH21_14q32.31b"; locus "HERVFH21_14q32.31b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0033"; repClass "LTR"; repEnd "6107"; repFamily "ERV1"; repLeft "-422"; repStart "3423"; chr14 rmsk exon 102248155 102248497 2959 + . gene_id "HERVFH21_14q32.31b"; transcript_id "HERVFH21_14q32.31b"; locus "HERVFH21_14q32.31b"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0033"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "-169"; repStart "1"; ### HERVH_14q32.31c ### chr14 rmsk gene 102410504 102411706 . + . gene_id "HERVH_14q32.31c"; transcript_id "HERVH_14q32.31c"; locus "HERVH_14q32.31c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1046"; model_cov "787"; model_pct "10.2"; chr14 rmsk exon 102410504 102410681 1086 + . gene_id "HERVH_14q32.31c"; transcript_id "HERVH_14q32.31c"; locus "HERVH_14q32.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1046"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4972"; chr14 rmsk exon 102410683 102410910 1314 + . gene_id "HERVH_14q32.31c"; transcript_id "HERVH_14q32.31c"; locus "HERVH_14q32.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1046"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr14 rmsk exon 102410909 102411288 2530 + . gene_id "HERVH_14q32.31c"; transcript_id "HERVH_14q32.31c"; locus "HERVH_14q32.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1046"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr14 rmsk exon 102411289 102411706 3076 + . gene_id "HERVH_14q32.31c"; transcript_id "HERVH_14q32.31c"; locus "HERVH_14q32.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1046"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### MER41_14q32.32 ### chr14 rmsk gene 102856187 102861776 . - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0452"; model_cov "4478"; model_pct "75.3"; chr14 rmsk exon 102856187 102856717 3844 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0452"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr14 rmsk exon 102856718 102858148 13403 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0452"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "4492"; repStart "0"; chr14 rmsk exon 102858453 102860449 13403 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0452"; repClass "LTR"; repEnd "4491"; repFamily "ERV1"; repLeft "2781"; repStart "-1455"; chr14 rmsk exon 102860446 102860949 2169 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0452"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1392"; repStart "-3929"; chr14 rmsk exon 102860951 102861629 4866 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0452"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr14 rmsk exon 102861630 102861776 1012 - . gene_id "MER41_14q32.32"; transcript_id "MER41_14q32.32"; locus "MER41_14q32.32"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0452"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "479"; repStart "0"; ### ERVLE_14q32.32a ### chr14 rmsk gene 103065568 103066764 . + . gene_id "ERVLE_14q32.32a"; transcript_id "ERVLE_14q32.32a"; locus "ERVLE_14q32.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3091"; model_cov "1229"; model_pct "21.7"; chr14 rmsk exon 103065568 103066764 2689 + . gene_id "ERVLE_14q32.32a"; transcript_id "ERVLE_14q32.32a"; locus "ERVLE_14q32.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3091"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-673"; repStart "3765"; ### ERVLE_14q32.32b ### chr14 rmsk gene 103141765 103143466 . - . gene_id "ERVLE_14q32.32b"; transcript_id "ERVLE_14q32.32b"; locus "ERVLE_14q32.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3092"; model_cov "1338"; model_pct "23.6"; chr14 rmsk exon 103141765 103142414 3031 - . gene_id "ERVLE_14q32.32b"; transcript_id "ERVLE_14q32.32b"; locus "ERVLE_14q32.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3092"; repClass "LTR"; repEnd "5355"; repFamily "ERVL"; repLeft "4691"; repStart "-312"; chr14 rmsk exon 103142858 103143466 3031 - . gene_id "ERVLE_14q32.32b"; transcript_id "ERVLE_14q32.32b"; locus "ERVLE_14q32.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3092"; repClass "LTR"; repEnd "4690"; repFamily "ERVL"; repLeft "4016"; repStart "-977"; ### ERVLE_14q32.32c ### chr14 rmsk gene 103145982 103149852 . - . gene_id "ERVLE_14q32.32c"; transcript_id "ERVLE_14q32.32c"; locus "ERVLE_14q32.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3093"; model_cov "1080"; model_pct "19.1"; chr14 rmsk exon 103145982 103146335 931 - . gene_id "ERVLE_14q32.32c"; transcript_id "ERVLE_14q32.32c"; locus "ERVLE_14q32.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3093"; repClass "LTR"; repEnd "4009"; repFamily "ERVL"; repLeft "3632"; repStart "-1658"; chr14 rmsk exon 103147088 103147362 882 - . gene_id "ERVLE_14q32.32c"; transcript_id "ERVLE_14q32.32c"; locus "ERVLE_14q32.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3093"; repClass "LTR"; repEnd "2914"; repFamily "ERVL"; repLeft "2630"; repStart "-2753"; chr14 rmsk exon 103149449 103149852 1264 - . gene_id "ERVLE_14q32.32c"; transcript_id "ERVLE_14q32.32c"; locus "ERVLE_14q32.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3093"; repClass "LTR"; repEnd "2628"; repFamily "ERVL"; repLeft "2209"; repStart "-3039"; ### HML1_14q32.32 ### chr14 rmsk gene 103169999 103174858 . + . gene_id "HML1_14q32.32"; transcript_id "HML1_14q32.32"; locus "HML1_14q32.32"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0099"; model_cov "4268"; model_pct "70.0"; chr14 rmsk exon 103169999 103170589 2719 + . gene_id "HML1_14q32.32"; transcript_id "HML1_14q32.32"; locus "HML1_14q32.32"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0099"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "15"; chr14 rmsk exon 103170590 103171789 8626 + . gene_id "HML1_14q32.32"; transcript_id "HML1_14q32.32"; locus "HML1_14q32.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0099"; repClass "LTR"; repEnd "1199"; repFamily "ERVK"; repLeft "-4897"; repStart "1"; chr14 rmsk exon 103171789 103174749 22341 + . gene_id "HML1_14q32.32"; transcript_id "HML1_14q32.32"; locus "HML1_14q32.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0099"; repClass "LTR"; repEnd "4310"; repFamily "ERVK"; repLeft "-1786"; repStart "1352"; chr14 rmsk exon 103174729 103174858 839 + . gene_id "HML1_14q32.32"; transcript_id "HML1_14q32.32"; locus "HML1_14q32.32"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0099"; repClass "LTR"; repEnd "5143"; repFamily "ERVK"; repLeft "-953"; repStart "5031"; ### MER101_14q32.32 ### chr14 rmsk gene 103181249 103183734 . + . gene_id "MER101_14q32.32"; transcript_id "MER101_14q32.32"; locus "MER101_14q32.32"; category "internal"; intModel "MER101-int"; locid "MER101-int_0317"; model_cov "2465"; model_pct "37.1"; chr14 rmsk exon 103181249 103181338 1590 + . gene_id "MER101_14q32.32"; transcript_id "MER101_14q32.32"; locus "MER101_14q32.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0317"; repClass "LTR"; repEnd "3623"; repFamily "ERV1"; repLeft "-3016"; repStart "3529"; chr14 rmsk exon 103181466 103182367 3020 + . gene_id "MER101_14q32.32"; transcript_id "MER101_14q32.32"; locus "MER101_14q32.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0317"; repClass "LTR"; repEnd "4062"; repFamily "ERV1"; repLeft "-2577"; repStart "3116"; chr14 rmsk exon 103182768 103183734 3020 + . gene_id "MER101_14q32.32"; transcript_id "MER101_14q32.32"; locus "MER101_14q32.32"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0317"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "-2037"; repStart "3177"; ### ERVLE_14q32.32d ### chr14 rmsk gene 103210314 103214436 . - . gene_id "ERVLE_14q32.32d"; transcript_id "ERVLE_14q32.32d"; locus "ERVLE_14q32.32d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3094"; model_cov "1596"; model_pct "28.2"; chr14 rmsk exon 103210314 103210464 354 - . gene_id "ERVLE_14q32.32d"; transcript_id "ERVLE_14q32.32d"; locus "ERVLE_14q32.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3094"; repClass "LTR"; repEnd "5405"; repFamily "ERVL"; repLeft "5235"; repStart "-262"; chr14 rmsk exon 103212736 103212918 542 - . gene_id "ERVLE_14q32.32d"; transcript_id "ERVLE_14q32.32d"; locus "ERVLE_14q32.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3094"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "5024"; repStart "-461"; chr14 rmsk exon 103212931 103213965 4100 - . gene_id "ERVLE_14q32.32d"; transcript_id "ERVLE_14q32.32d"; locus "ERVLE_14q32.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3094"; repClass "LTR"; repEnd "4732"; repFamily "ERVL"; repLeft "3668"; repStart "-935"; chr14 rmsk exon 103214274 103214436 4100 - . gene_id "ERVLE_14q32.32d"; transcript_id "ERVLE_14q32.32d"; locus "ERVLE_14q32.32d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3094"; repClass "LTR"; repEnd "3667"; repFamily "ERVL"; repLeft "3487"; repStart "-2000"; ### HML3_14q32.32 ### chr14 rmsk gene 103233998 103239485 . + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0190"; model_cov "4466"; model_pct "74.2"; chr14 rmsk exon 103233998 103234510 4472 + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0190"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr14 rmsk exon 103234511 103237305 22005 + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0190"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr14 rmsk exon 103237306 103237536 1792 + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0190"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr14 rmsk exon 103237523 103238967 11149 + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0190"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chr14 rmsk exon 103238968 103239485 4329 + . gene_id "HML3_14q32.32"; transcript_id "HML3_14q32.32"; locus "HML3_14q32.32"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0190"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_14q32.32 ### chr14 rmsk gene 103354907 103355857 . - . gene_id "ERV316A3_14q32.32"; transcript_id "ERV316A3_14q32.32"; locus "ERV316A3_14q32.32"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2337"; model_cov "661"; model_pct "12.6"; chr14 rmsk exon 103354907 103355104 847 - . gene_id "ERV316A3_14q32.32"; transcript_id "ERV316A3_14q32.32"; locus "ERV316A3_14q32.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2337"; repClass "LTR"; repEnd "3376"; repFamily "ERVL"; repLeft "3185"; repStart "-1850"; chr14 rmsk exon 103355463 103355857 847 - . gene_id "ERV316A3_14q32.32"; transcript_id "ERV316A3_14q32.32"; locus "ERV316A3_14q32.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2337"; repClass "LTR"; repEnd "3184"; repFamily "ERVL"; repLeft "2714"; repStart "-2042"; ### ERVLE_14q32.33a ### chr14 rmsk gene 103989420 103990330 . - . gene_id "ERVLE_14q32.33a"; transcript_id "ERVLE_14q32.33a"; locus "ERVLE_14q32.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3095"; model_cov "1011"; model_pct "17.8"; chr14 rmsk exon 103989420 103990330 1353 - . gene_id "ERVLE_14q32.33a"; transcript_id "ERVLE_14q32.33a"; locus "ERVLE_14q32.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3095"; repClass "LTR"; repEnd "4464"; repFamily "ERVL"; repLeft "3453"; repStart "-1203"; ### ERVLB4_14q32.33a ### chr14 rmsk gene 104463215 104469719 . - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1463"; model_cov "4985"; model_pct "87.2"; chr14 rmsk exon 104463215 104463616 1317 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-40"; repStart "-51"; chr14 rmsk exon 104463622 104464388 4402 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4922"; repStart "0"; chr14 rmsk exon 104464694 104464798 4402 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4811"; repStart "-793"; chr14 rmsk exon 104464793 104465980 5886 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "4731"; repFamily "ERVL"; repLeft "3454"; repStart "-983"; chr14 rmsk exon 104465976 104466530 15365 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "2809"; repFamily "ERVL"; repLeft "2256"; repStart "-2905"; chr14 rmsk exon 104466838 104467405 15365 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "1700"; repStart "-3459"; chr14 rmsk exon 104467562 104469237 15365 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "1699"; repFamily "ERVL"; repLeft "1"; repStart "-4015"; chr14 rmsk exon 104469238 104469719 2363 - . gene_id "ERVLB4_14q32.33a"; transcript_id "ERVLB4_14q32.33a"; locus "ERVLB4_14q32.33a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1463"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_14q32.33b ### chr14 rmsk gene 104520054 104522034 . + . gene_id "ERVLE_14q32.33b"; transcript_id "ERVLE_14q32.33b"; locus "ERVLE_14q32.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3096"; model_cov "2114"; model_pct "37.3"; chr14 rmsk exon 104520054 104520967 1070 + . gene_id "ERVLE_14q32.33b"; transcript_id "ERVLE_14q32.33b"; locus "ERVLE_14q32.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3096"; repClass "LTR"; repEnd "1722"; repFamily "ERVL"; repLeft "-3945"; repStart "697"; chr14 rmsk exon 104520989 104522034 3338 + . gene_id "ERVLE_14q32.33b"; transcript_id "ERVLE_14q32.33b"; locus "ERVLE_14q32.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3096"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "-2801"; repStart "1777"; ### ERVLE_14q32.33c ### chr14 rmsk gene 104558162 104558583 . + . gene_id "ERVLE_14q32.33c"; transcript_id "ERVLE_14q32.33c"; locus "ERVLE_14q32.33c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3097"; model_cov "621"; model_pct "11.0"; chr14 rmsk exon 104558162 104558583 605 + . gene_id "ERVLE_14q32.33c"; transcript_id "ERVLE_14q32.33c"; locus "ERVLE_14q32.33c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3097"; repClass "LTR"; repEnd "4713"; repFamily "ERVL"; repLeft "-954"; repStart "4092"; ### ERV316A3_14q32.33 ### chr14 rmsk gene 104608641 104609935 . - . gene_id "ERV316A3_14q32.33"; transcript_id "ERV316A3_14q32.33"; locus "ERV316A3_14q32.33"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2338"; model_cov "595"; model_pct "11.4"; chr14 rmsk exon 104608641 104608995 481 - . gene_id "ERV316A3_14q32.33"; transcript_id "ERV316A3_14q32.33"; locus "ERV316A3_14q32.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2338"; repClass "LTR"; repEnd "1660"; repFamily "ERVL"; repLeft "1311"; repStart "-3566"; chr14 rmsk exon 104609697 104609935 320 - . gene_id "ERV316A3_14q32.33"; transcript_id "ERV316A3_14q32.33"; locus "ERV316A3_14q32.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2338"; repClass "LTR"; repEnd "1047"; repFamily "ERVL"; repLeft "801"; repStart "-4179"; ### MER4_14q32.33a ### chr14 rmsk gene 105031317 105039940 . + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0680"; model_cov "4224"; model_pct "64.0"; chr14 rmsk exon 105031317 105031711 1003 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0680"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-195"; repStart "18"; chr14 rmsk exon 105031941 105031965 2488 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "24"; repFamily "ERV1"; repLeft "-6574"; repStart "1"; chr14 rmsk exon 105032273 105032452 2488 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "223"; repFamily "ERV1"; repLeft "-6375"; repStart "25"; chr14 rmsk exon 105033004 105033364 2488 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "224"; chr14 rmsk exon 105033333 105033459 361 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-739"; chr14 rmsk exon 105033695 105034048 1176 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2117"; chr14 rmsk exon 105034048 105034778 5402 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "809"; repFamily "ERV1"; repLeft "-5789"; repStart "29"; chr14 rmsk exon 105035086 105035200 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "2288"; repFamily "ERV1"; repLeft "-4310"; repStart "2186"; chr14 rmsk exon 105036266 105036333 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-3605"; repStart "2289"; chr14 rmsk exon 105036762 105036861 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "3070"; repFamily "ERV1"; repLeft "-3528"; repStart "2994"; chr14 rmsk exon 105037479 105037514 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "3100"; repFamily "ERV1"; repLeft "-3498"; repStart "3071"; chr14 rmsk exon 105037813 105038415 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "3757"; repFamily "ERV1"; repLeft "-2841"; repStart "3101"; chr14 rmsk exon 105038947 105039252 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "4080"; repFamily "ERV1"; repLeft "-2518"; repStart "3758"; chr14 rmsk exon 105039558 105039940 6448 + . gene_id "MER4_14q32.33a"; transcript_id "MER4_14q32.33a"; locus "MER4_14q32.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0680"; repClass "LTR"; repEnd "4473"; repFamily "ERV1"; repLeft "-2125"; repStart "4081"; ### LTR57_14q32.33a ### chr14 rmsk gene 105035201 105036265 . + . gene_id "LTR57_14q32.33a"; transcript_id "LTR57_14q32.33a"; locus "LTR57_14q32.33a"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0147"; model_cov "767"; model_pct "14.4"; chr14 rmsk exon 105035201 105035481 1777 + . gene_id "LTR57_14q32.33a"; transcript_id "LTR57_14q32.33a"; locus "LTR57_14q32.33a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0147"; repClass "LTR"; repEnd "1092"; repFamily "ERVL"; repLeft "-4251"; repStart "812"; chr14 rmsk exon 105035783 105036265 1777 + . gene_id "LTR57_14q32.33a"; transcript_id "LTR57_14q32.33a"; locus "LTR57_14q32.33a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0147"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-3763"; repStart "1093"; ### ERVLE_14q32.33d ### chr14 rmsk gene 105116052 105117546 . - . gene_id "ERVLE_14q32.33d"; transcript_id "ERVLE_14q32.33d"; locus "ERVLE_14q32.33d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3099"; model_cov "1234"; model_pct "21.8"; chr14 rmsk exon 105116052 105116370 1008 - . gene_id "ERVLE_14q32.33d"; transcript_id "ERVLE_14q32.33d"; locus "ERVLE_14q32.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3099"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "1041"; repStart "-4260"; chr14 rmsk exon 105116677 105117080 1008 - . gene_id "ERVLE_14q32.33d"; transcript_id "ERVLE_14q32.33d"; locus "ERVLE_14q32.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3099"; repClass "LTR"; repEnd "1040"; repFamily "ERVL"; repLeft "635"; repStart "-4627"; chr14 rmsk exon 105117101 105117546 574 - . gene_id "ERVLE_14q32.33d"; transcript_id "ERVLE_14q32.33d"; locus "ERVLE_14q32.33d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3099"; repClass "LTR"; repEnd "579"; repFamily "ERVL"; repLeft "116"; repStart "-5088"; ### LTR57_14q32.33b ### chr14 rmsk gene 105129954 105131880 . + . gene_id "LTR57_14q32.33b"; transcript_id "LTR57_14q32.33b"; locus "LTR57_14q32.33b"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0148"; model_cov "1278"; model_pct "23.9"; chr14 rmsk exon 105129954 105130159 4627 + . gene_id "LTR57_14q32.33b"; transcript_id "LTR57_14q32.33b"; locus "LTR57_14q32.33b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0148"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-4832"; repStart "310"; chr14 rmsk exon 105130472 105130786 4627 + . gene_id "LTR57_14q32.33b"; transcript_id "LTR57_14q32.33b"; locus "LTR57_14q32.33b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0148"; repClass "LTR"; repEnd "792"; repFamily "ERVL"; repLeft "-4551"; repStart "512"; chr14 rmsk exon 105131090 105131880 4627 + . gene_id "LTR57_14q32.33b"; transcript_id "LTR57_14q32.33b"; locus "LTR57_14q32.33b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0148"; repClass "LTR"; repEnd "1590"; repFamily "ERVL"; repLeft "-3753"; repStart "793"; ### HML2_14q32.33 ### chr14 rmsk gene 105673313 105676203 . + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0100"; model_cov "1886"; model_pct "25.0"; chr14 rmsk exon 105673313 105675001 11016 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766"; chr14 rmsk exon 105675007 105675106 414 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587"; chr14 rmsk exon 105675105 105675196 575 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441"; chr14 rmsk exon 105675200 105676203 8253 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER101_14q32.33 ### chr14 rmsk gene 105819847 105825276 . - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0320"; model_cov "3850"; model_pct "58.0"; chr14 rmsk exon 105819847 105820323 2416 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0320"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr14 rmsk exon 105820329 105820791 1855 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0320"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6169"; repStart "0"; chr14 rmsk exon 105820856 105821402 2863 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0320"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "3604"; repStart "-2037"; chr14 rmsk exon 105821712 105823459 4208 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0320"; repClass "LTR"; repEnd "4312"; repFamily "ERV1"; repLeft "2482"; repStart "-2327"; chr14 rmsk exon 105823667 105824028 1643 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0320"; repClass "LTR"; repEnd "2749"; repFamily "ERV1"; repLeft "2358"; repStart "-3890"; chr14 rmsk exon 105825112 105825276 708 - . gene_id "MER101_14q32.33"; transcript_id "MER101_14q32.33"; locus "MER101_14q32.33"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0320"; repClass "LTR"; repEnd "508"; repFamily "ERV1"; repLeft "347"; repStart "-6131"; ### HERVL_14q32.33a ### chr14 rmsk gene 105965186 105966980 . + . gene_id "HERVL_14q32.33a"; transcript_id "HERVL_14q32.33a"; locus "HERVL_14q32.33a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1110"; model_cov "1396"; model_pct "24.7"; chr14 rmsk exon 105965186 105966563 10879 + . gene_id "HERVL_14q32.33a"; transcript_id "HERVL_14q32.33a"; locus "HERVL_14q32.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1110"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr14 rmsk exon 105966564 105966980 3226 + . gene_id "HERVL_14q32.33a"; transcript_id "HERVL_14q32.33a"; locus "HERVL_14q32.33a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1110"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-52"; repStart "-101"; ### HERVL32_14q32.33a ### chr14 rmsk gene 105981942 105985336 . - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0040"; model_cov "2859"; model_pct "83.6"; chr14 rmsk exon 105981942 105982977 3201 - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0040"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1643"; repStart "-738"; chr14 rmsk exon 105983002 105983667 1166 - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0040"; repClass "LTR"; repEnd "1310"; repFamily "ERVL"; repLeft "612"; repStart "-2108"; chr14 rmsk exon 105983849 105984345 1667 - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0040"; repClass "LTR"; repEnd "1177"; repFamily "ERVL"; repLeft "624"; repStart "-2241"; chr14 rmsk exon 105984355 105984888 1016 - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0040"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "19"; repStart "-2828"; chr14 rmsk exon 105984907 105985336 1891 - . gene_id "HERVL32_14q32.33a"; transcript_id "HERVL32_14q32.33a"; locus "HERVL32_14q32.33a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0040"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP1_14q32.33 ### chr14 rmsk gene 106052327 106053583 . - . gene_id "HUERSP1_14q32.33"; transcript_id "HUERSP1_14q32.33"; locus "HUERSP1_14q32.33"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0166"; model_cov "1237"; model_pct "19.8"; chr14 rmsk exon 106052327 106053406 6040 - . gene_id "HUERSP1_14q32.33"; transcript_id "HUERSP1_14q32.33"; locus "HUERSP1_14q32.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0166"; repClass "LTR"; repEnd "6226"; repFamily "ERV1"; repLeft "5130"; repStart "-37"; chr14 rmsk exon 106053441 106053583 698 - . gene_id "HUERSP1_14q32.33"; transcript_id "HUERSP1_14q32.33"; locus "HUERSP1_14q32.33"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0166"; repClass "LTR"; repEnd "4749"; repFamily "ERV1"; repLeft "4608"; repStart "-1514"; ### HERVL_14q32.33b ### chr14 rmsk gene 106096300 106097875 . - . gene_id "HERVL_14q32.33b"; transcript_id "HERVL_14q32.33b"; locus "HERVL_14q32.33b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1111"; model_cov "654"; model_pct "11.6"; chr14 rmsk exon 106096300 106096880 1606 - . gene_id "HERVL_14q32.33b"; transcript_id "HERVL_14q32.33b"; locus "HERVL_14q32.33b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1111"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr14 rmsk exon 106096883 106097134 3372 - . gene_id "HERVL_14q32.33b"; transcript_id "HERVL_14q32.33b"; locus "HERVL_14q32.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1111"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5421"; repStart "0"; chr14 rmsk exon 106097444 106097875 3372 - . gene_id "HERVL_14q32.33b"; transcript_id "HERVL_14q32.33b"; locus "HERVL_14q32.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1111"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "4999"; repStart "-234"; ### MER4B_14q32.33a ### chr14 rmsk gene 106109049 106110373 . - . gene_id "MER4B_14q32.33a"; transcript_id "MER4B_14q32.33a"; locus "MER4B_14q32.33a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0372"; model_cov "1237"; model_pct "18.3"; chr14 rmsk exon 106109049 106109416 329 - . gene_id "MER4B_14q32.33a"; transcript_id "MER4B_14q32.33a"; locus "MER4B_14q32.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0372"; repClass "LTR"; repEnd "4317"; repFamily "ERV1"; repLeft "3950"; repStart "-2441"; chr14 rmsk exon 106109534 106110373 784 - . gene_id "MER4B_14q32.33a"; transcript_id "MER4B_14q32.33a"; locus "MER4B_14q32.33a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0372"; repClass "LTR"; repEnd "3964"; repFamily "ERV1"; repLeft "3094"; repStart "-2794"; ### MER4_14q32.33b ### chr14 rmsk gene 106135482 106140504 . - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0681"; model_cov "5511"; model_pct "83.5"; chr14 rmsk exon 106135482 106135544 1448 - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0681"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "193"; repStart "-409"; chr14 rmsk exon 106135546 106135587 9098 - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0681"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "6287"; repStart "-270"; chr14 rmsk exon 106135956 106138210 9098 - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0681"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "4066"; repStart "-312"; chr14 rmsk exon 106138488 106139507 9098 - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0681"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "2037"; repStart "-2533"; chr14 rmsk exon 106139587 106140504 1603 - . gene_id "MER4_14q32.33b"; transcript_id "MER4_14q32.33b"; locus "MER4_14q32.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0681"; repClass "LTR"; repEnd "1856"; repFamily "ERV1"; repLeft "634"; repStart "-4742"; ### HERVS71_14q32.33 ### chr14 rmsk gene 106196991 106207472 . - . gene_id "HERVS71_14q32.33"; transcript_id "HERVS71_14q32.33"; locus "HERVS71_14q32.33"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0039"; model_cov "8974"; model_pct "100.0"; chr14 rmsk exon 106196991 106197571 2042 - . gene_id "HERVS71_14q32.33"; transcript_id "HERVS71_14q32.33"; locus "HERVS71_14q32.33"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0039"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "7"; repStart "0"; chr14 rmsk exon 106197572 106206819 72723 - . gene_id "HERVS71_14q32.33"; transcript_id "HERVS71_14q32.33"; locus "HERVS71_14q32.33"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0039"; repClass "LTR"; repEnd "8978"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr14 rmsk exon 106206824 106207472 2254 - . gene_id "HERVS71_14q32.33"; transcript_id "HERVS71_14q32.33"; locus "HERVS71_14q32.33"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0039"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_14q32.33a ### chr14 rmsk gene 106404418 106405508 . - . gene_id "PRIMA41_14q32.33a"; transcript_id "PRIMA41_14q32.33a"; locus "PRIMA41_14q32.33a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0113"; model_cov "971"; model_pct "12.5"; chr14 rmsk exon 106404418 106405245 1387 - . gene_id "PRIMA41_14q32.33a"; transcript_id "PRIMA41_14q32.33a"; locus "PRIMA41_14q32.33a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0113"; repClass "LTR"; repEnd "7506"; repFamily "ERV1"; repLeft "6660"; repStart "-250"; chr14 rmsk exon 106405382 106405508 288 - . gene_id "PRIMA41_14q32.33a"; transcript_id "PRIMA41_14q32.33a"; locus "PRIMA41_14q32.33a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0113"; repClass "LTR"; repEnd "6454"; repFamily "ERV1"; repLeft "6329"; repStart "-1302"; ### MER4_14q32.33c ### chr14 rmsk gene 106411423 106416851 . - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0682"; model_cov "5329"; model_pct "80.8"; chr14 rmsk exon 106411423 106411485 417 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0682"; repClass "LTR"; repEnd "63"; repFamily "ERV1"; repLeft "1"; repStart "-409"; chr14 rmsk exon 106411486 106411530 10559 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0682"; repClass "LTR"; repEnd "6329"; repFamily "ERV1"; repLeft "6286"; repStart "-269"; chr14 rmsk exon 106411882 106414099 10559 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0682"; repClass "LTR"; repEnd "6285"; repFamily "ERV1"; repLeft "4069"; repStart "-313"; chr14 rmsk exon 106414379 106415844 10559 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0682"; repClass "LTR"; repEnd "4068"; repFamily "ERV1"; repLeft "1556"; repStart "-2530"; chr14 rmsk exon 106416146 106416416 2938 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0682"; repClass "LTR"; repEnd "1395"; repFamily "ERV1"; repLeft "1053"; repStart "-5203"; chr14 rmsk exon 106416456 106416851 2938 - . gene_id "MER4_14q32.33c"; transcript_id "MER4_14q32.33c"; locus "MER4_14q32.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0682"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "836"; repStart "-5546"; ### MER4B_14q32.33b ### chr14 rmsk gene 106465489 106466214 . - . gene_id "MER4B_14q32.33b"; transcript_id "MER4B_14q32.33b"; locus "MER4B_14q32.33b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0374"; model_cov "727"; model_pct "10.8"; chr14 rmsk exon 106465489 106466214 854 - . gene_id "MER4B_14q32.33b"; transcript_id "MER4B_14q32.33b"; locus "MER4B_14q32.33b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0374"; repClass "LTR"; repEnd "3929"; repFamily "ERV1"; repLeft "3202"; repStart "-2829"; ### PRIMA41_14q32.33b ### chr14 rmsk gene 106485368 106488054 . - . gene_id "PRIMA41_14q32.33b"; transcript_id "PRIMA41_14q32.33b"; locus "PRIMA41_14q32.33b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0114"; model_cov "1638"; model_pct "21.1"; chr14 rmsk exon 106485368 106486260 1665 - . gene_id "PRIMA41_14q32.33b"; transcript_id "PRIMA41_14q32.33b"; locus "PRIMA41_14q32.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0114"; repClass "LTR"; repEnd "7506"; repFamily "ERV1"; repLeft "6609"; repStart "-250"; chr14 rmsk exon 106486323 106486457 271 - . gene_id "PRIMA41_14q32.33b"; transcript_id "PRIMA41_14q32.33b"; locus "PRIMA41_14q32.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0114"; repClass "LTR"; repEnd "6460"; repFamily "ERV1"; repLeft "6329"; repStart "-1296"; chr14 rmsk exon 106486948 106487405 859 - . gene_id "PRIMA41_14q32.33b"; transcript_id "PRIMA41_14q32.33b"; locus "PRIMA41_14q32.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0114"; repClass "LTR"; repEnd "5792"; repFamily "ERV1"; repLeft "5330"; repStart "-1964"; chr14 rmsk exon 106487890 106488054 305 - . gene_id "PRIMA41_14q32.33b"; transcript_id "PRIMA41_14q32.33b"; locus "PRIMA41_14q32.33b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0114"; repClass "LTR"; repEnd "4839"; repFamily "ERV1"; repLeft "4691"; repStart "-2917"; ### MER4_14q32.33d ### chr14 rmsk gene 106522793 106529622 . - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0684"; model_cov "4926"; model_pct "74.7"; chr14 rmsk exon 106522793 106523223 1363 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0684"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "1"; repStart "-4"; chr14 rmsk exon 106523237 106523382 389 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0684"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6456"; repStart "-5"; chr14 rmsk exon 106523553 106523601 2073 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0684"; repClass "LTR"; repEnd "654"; repFamily "ERV1"; repLeft "621"; repStart "-10"; chr14 rmsk exon 106523954 106524355 2073 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0684"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "59"; repStart "-44"; chr14 rmsk exon 106525123 106525185 1536 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0684"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "193"; repStart "-414"; chr14 rmsk exon 106525186 106525229 8939 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0684"; repClass "LTR"; repEnd "6329"; repFamily "ERV1"; repLeft "6286"; repStart "-269"; chr14 rmsk exon 106525596 106527808 8939 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0684"; repClass "LTR"; repEnd "6285"; repFamily "ERV1"; repLeft "4069"; repStart "-313"; chr14 rmsk exon 106528091 106529622 8939 - . gene_id "MER4_14q32.33d"; transcript_id "MER4_14q32.33d"; locus "MER4_14q32.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0684"; repClass "LTR"; repEnd "4068"; repFamily "ERV1"; repLeft "1538"; repStart "-2530"; ### ERVLB4_14q32.33b ### chr14 rmsk gene 106567399 106568555 . - . gene_id "ERVLB4_14q32.33b"; transcript_id "ERVLB4_14q32.33b"; locus "ERVLB4_14q32.33b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1465"; model_cov "655"; model_pct "11.5"; chr14 rmsk exon 106567399 106567524 668 - . gene_id "ERVLB4_14q32.33b"; transcript_id "ERVLB4_14q32.33b"; locus "ERVLB4_14q32.33b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1465"; repClass "LTR"; repEnd "128"; repFamily "ERVL"; repLeft "3"; repStart "-426"; chr14 rmsk exon 106567527 106567782 1491 - . gene_id "ERVLB4_14q32.33b"; transcript_id "ERVLB4_14q32.33b"; locus "ERVLB4_14q32.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1465"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5483"; repStart "0"; chr14 rmsk exon 106568095 106568164 1491 - . gene_id "ERVLB4_14q32.33b"; transcript_id "ERVLB4_14q32.33b"; locus "ERVLB4_14q32.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1465"; repClass "LTR"; repEnd "5482"; repFamily "ERVL"; repLeft "5415"; repStart "-232"; chr14 rmsk exon 106568208 106568555 2053 - . gene_id "ERVLB4_14q32.33b"; transcript_id "ERVLB4_14q32.33b"; locus "ERVLB4_14q32.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1465"; repClass "LTR"; repEnd "5347"; repFamily "ERVL"; repLeft "4990"; repStart "-367"; ### MER4B_14q32.33c ### chr14 rmsk gene 106580115 106580779 . - . gene_id "MER4B_14q32.33c"; transcript_id "MER4B_14q32.33c"; locus "MER4B_14q32.33c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0377"; model_cov "696"; model_pct "10.3"; chr14 rmsk exon 106580115 106580779 684 - . gene_id "MER4B_14q32.33c"; transcript_id "MER4B_14q32.33c"; locus "MER4B_14q32.33c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0377"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "3090"; repStart "-2972"; ### LTR25_14q32.33a ### chr14 rmsk gene 106594611 106595477 . + . gene_id "LTR25_14q32.33a"; transcript_id "LTR25_14q32.33a"; locus "LTR25_14q32.33a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0108"; model_cov "716"; model_pct "10.0"; chr14 rmsk exon 106594611 106594801 1014 + . gene_id "LTR25_14q32.33a"; transcript_id "LTR25_14q32.33a"; locus "LTR25_14q32.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0108"; repClass "LTR"; repEnd "5677"; repFamily "ERV1"; repLeft "-1511"; repStart "5489"; chr14 rmsk exon 106594909 106595477 2446 + . gene_id "LTR25_14q32.33a"; transcript_id "LTR25_14q32.33a"; locus "LTR25_14q32.33a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0108"; repClass "LTR"; repEnd "7129"; repFamily "ERV1"; repLeft "-59"; repStart "6601"; ### LTR25_14q32.33b ### chr14 rmsk gene 106645387 106646166 . + . gene_id "LTR25_14q32.33b"; transcript_id "LTR25_14q32.33b"; locus "LTR25_14q32.33b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0109"; model_cov "738"; model_pct "10.3"; chr14 rmsk exon 106645387 106646166 3145 + . gene_id "LTR25_14q32.33b"; transcript_id "LTR25_14q32.33b"; locus "LTR25_14q32.33b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0109"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "-23"; repStart "6427"; ### HML5_14q32.33a ### chr14 rmsk gene 106697994 106703125 . + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0100"; model_cov "5765"; model_pct "84.3"; chr14 rmsk exon 106697994 106698212 1450 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "233"; repFamily "ERVK"; repLeft "-259"; repStart "5"; chr14 rmsk exon 106698212 106698336 617 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "-4"; repStart "287"; chr14 rmsk exon 106698337 106698983 3991 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "28"; chr14 rmsk exon 106699264 106699403 787 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "-4364"; repStart "2327"; chr14 rmsk exon 106699399 106699481 552 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "-3930"; repStart "2825"; chr14 rmsk exon 106699474 106699526 351 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4292"; repStart "2493"; chr14 rmsk exon 106699526 106702658 20057 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2019"; chr14 rmsk exon 106702659 106703125 2999 + . gene_id "HML5_14q32.33a"; transcript_id "HML5_14q32.33a"; locus "HML5_14q32.33a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0100"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML5_14q32.33b ### chr14 rmsk gene 106744465 106749566 . + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0101"; model_cov "5757"; model_pct "84.2"; chr14 rmsk exon 106744465 106744683 1465 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "233"; repFamily "ERVK"; repLeft "-259"; repStart "5"; chr14 rmsk exon 106744683 106744807 622 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "-4"; repStart "287"; chr14 rmsk exon 106744808 106745454 3989 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "28"; chr14 rmsk exon 106745735 106745874 762 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "-4364"; repStart "2327"; chr14 rmsk exon 106745870 106745952 543 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "-3930"; repStart "2825"; chr14 rmsk exon 106745945 106745997 331 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4292"; repStart "2493"; chr14 rmsk exon 106745997 106749099 20606 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2027"; chr14 rmsk exon 106749100 106749566 2855 + . gene_id "HML5_14q32.33b"; transcript_id "HML5_14q32.33b"; locus "HML5_14q32.33b"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0101"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL32_14q32.33b ### chr14 rmsk gene 106792085 106793413 . - . gene_id "HERVL32_14q32.33b"; transcript_id "HERVL32_14q32.33b"; locus "HERVL32_14q32.33b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0041"; model_cov "935"; model_pct "27.4"; chr14 rmsk exon 106792085 106793033 2789 - . gene_id "HERVL32_14q32.33b"; transcript_id "HERVL32_14q32.33b"; locus "HERVL32_14q32.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0041"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "26"; repStart "-2457"; chr14 rmsk exon 106793060 106793413 1403 - . gene_id "HERVL32_14q32.33b"; transcript_id "HERVL32_14q32.33b"; locus "HERVL32_14q32.33b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0041"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "74"; repStart "0"; ### HERVL_14q32.33c ### chr14 rmsk gene 106832814 106834073 . - . gene_id "HERVL_14q32.33c"; transcript_id "HERVL_14q32.33c"; locus "HERVL_14q32.33c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1114"; model_cov "648"; model_pct "11.5"; chr14 rmsk exon 106832814 106833405 1414 - . gene_id "HERVL_14q32.33c"; transcript_id "HERVL_14q32.33c"; locus "HERVL_14q32.33c"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1114"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14 rmsk exon 106833419 106834073 3505 - . gene_id "HERVL_14q32.33c"; transcript_id "HERVL_14q32.33c"; locus "HERVL_14q32.33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1114"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "4996"; repStart "-10"; ### HERV3_14q32.33 ### chr14 rmsk gene 106836061 106845981 . - . gene_id "HERV3_14q32.33"; transcript_id "HERV3_14q32.33"; locus "HERV3_14q32.33"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0057"; model_cov "8422"; model_pct "100.0"; chr14 rmsk exon 106836061 106836751 1534 - . gene_id "HERV3_14q32.33"; transcript_id "HERV3_14q32.33"; locus "HERV3_14q32.33"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0057"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "10"; repStart "0"; chr14 rmsk exon 106836776 106845293 45589 - . gene_id "HERV3_14q32.33"; transcript_id "HERV3_14q32.33"; locus "HERV3_14q32.33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0057"; repClass "LTR"; repEnd "8423"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr14 rmsk exon 106845295 106845981 1232 - . gene_id "HERV3_14q32.33"; transcript_id "HERV3_14q32.33"; locus "HERV3_14q32.33"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0057"; repClass "LTR"; repEnd "674"; repFamily "ERV1"; repLeft "10"; repStart "-1"; ### MER4B_14q32.33d ### chr14 rmsk gene 106852618 106853459 . - . gene_id "MER4B_14q32.33d"; transcript_id "MER4B_14q32.33d"; locus "MER4B_14q32.33d"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0378"; model_cov "873"; model_pct "12.9"; chr14 rmsk exon 106852618 106853459 912 - . gene_id "MER4B_14q32.33d"; transcript_id "MER4B_14q32.33d"; locus "MER4B_14q32.33d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0378"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "3090"; repStart "-2795"; ### ERVLE_15q11.1 ### chr15 rmsk gene 19839067 19839682 . + . gene_id "ERVLE_15q11.1"; transcript_id "ERVLE_15q11.1"; locus "ERVLE_15q11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3101"; model_cov "607"; model_pct "10.7"; chr15 rmsk exon 19839067 19839455 439 + . gene_id "ERVLE_15q11.1"; transcript_id "ERVLE_15q11.1"; locus "ERVLE_15q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3101"; repClass "LTR"; repEnd "3325"; repFamily "ERVL"; repLeft "-2342"; repStart "2859"; chr15 rmsk exon 19839551 19839682 366 + . gene_id "ERVLE_15q11.1"; transcript_id "ERVLE_15q11.1"; locus "ERVLE_15q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3101"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "-2078"; repStart "3448"; ### ERV316A3_15q11.1a ### chr15 rmsk gene 19852611 19853873 . - . gene_id "ERV316A3_15q11.1a"; transcript_id "ERV316A3_15q11.1a"; locus "ERV316A3_15q11.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2340"; model_cov "732"; model_pct "14.0"; chr15 rmsk exon 19852611 19853026 739 - . gene_id "ERV316A3_15q11.1a"; transcript_id "ERV316A3_15q11.1a"; locus "ERV316A3_15q11.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2340"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "7"; repStart "0"; chr15 rmsk exon 19853077 19853206 405 - . gene_id "ERV316A3_15q11.1a"; transcript_id "ERV316A3_15q11.1a"; locus "ERV316A3_15q11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2340"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "5069"; repStart "-28"; chr15 rmsk exon 19853328 19853873 2598 - . gene_id "ERV316A3_15q11.1a"; transcript_id "ERV316A3_15q11.1a"; locus "ERV316A3_15q11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2340"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "4214"; repStart "-409"; ### ERV316A3_15q11.1b ### chr15 rmsk gene 19853927 19855134 . - . gene_id "ERV316A3_15q11.1b"; transcript_id "ERV316A3_15q11.1b"; locus "ERV316A3_15q11.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2341"; model_cov "1338"; model_pct "25.6"; chr15 rmsk exon 19853927 19855134 2598 - . gene_id "ERV316A3_15q11.1b"; transcript_id "ERV316A3_15q11.1b"; locus "ERV316A3_15q11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2341"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "3479"; repStart "-409"; ### HERVI_15q11.1 ### chr15 rmsk gene 19887884 19890348 . + . gene_id "HERVI_15q11.1"; transcript_id "HERVI_15q11.1"; locus "HERVI_15q11.1"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0029"; model_cov "1913"; model_pct "24.6"; chr15 rmsk exon 19887884 19888426 2556 + . gene_id "HERVI_15q11.1"; transcript_id "HERVI_15q11.1"; locus "HERVI_15q11.1"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0029"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "2"; chr15 rmsk exon 19888442 19888774 1111 + . gene_id "HERVI_15q11.1"; transcript_id "HERVI_15q11.1"; locus "HERVI_15q11.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0029"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-7468"; repStart "1"; chr15 rmsk exon 19888882 19890348 7739 + . gene_id "HERVI_15q11.1"; transcript_id "HERVI_15q11.1"; locus "HERVI_15q11.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0029"; repClass "LTR"; repEnd "1948"; repFamily "ERV1"; repLeft "-5837"; repStart "351"; ### HERVL_15q11.1 ### chr15 rmsk gene 20041343 20043131 . + . gene_id "HERVL_15q11.1"; transcript_id "HERVL_15q11.1"; locus "HERVL_15q11.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1117"; model_cov "1396"; model_pct "24.7"; chr15 rmsk exon 20041343 20042724 10232 + . gene_id "HERVL_15q11.1"; transcript_id "HERVL_15q11.1"; locus "HERVL_15q11.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1117"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr15 rmsk exon 20042725 20043131 3016 + . gene_id "HERVL_15q11.1"; transcript_id "HERVL_15q11.1"; locus "HERVL_15q11.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1117"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### ERVLB4_15q11.1a ### chr15 rmsk gene 20119705 20120822 . - . gene_id "ERVLB4_15q11.1a"; transcript_id "ERVLB4_15q11.1a"; locus "ERVLB4_15q11.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1467"; model_cov "1019"; model_pct "17.8"; chr15 rmsk exon 20119705 20120511 3494 - . gene_id "ERVLB4_15q11.1a"; transcript_id "ERVLB4_15q11.1a"; locus "ERVLB4_15q11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1467"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr15 rmsk exon 20120635 20120822 1034 - . gene_id "ERVLB4_15q11.1a"; transcript_id "ERVLB4_15q11.1a"; locus "ERVLB4_15q11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1467"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; ### ERVLB4_15q11.1b ### chr15 rmsk gene 20175984 20176527 . - . gene_id "ERVLB4_15q11.1b"; transcript_id "ERVLB4_15q11.1b"; locus "ERVLB4_15q11.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1468"; model_cov "580"; model_pct "10.2"; chr15 rmsk exon 20175984 20176527 3087 - . gene_id "ERVLB4_15q11.1b"; transcript_id "ERVLB4_15q11.1b"; locus "ERVLB4_15q11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1468"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "4782"; repStart "-352"; ### ERVLB4_15q11.1c ### chr15 rmsk gene 20332728 20333829 . + . gene_id "ERVLB4_15q11.1c"; transcript_id "ERVLB4_15q11.1c"; locus "ERVLB4_15q11.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1469"; model_cov "1019"; model_pct "17.8"; chr15 rmsk exon 20332728 20332911 976 + . gene_id "ERVLB4_15q11.1c"; transcript_id "ERVLB4_15q11.1c"; locus "ERVLB4_15q11.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1469"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr15 rmsk exon 20333023 20333829 3446 + . gene_id "ERVLB4_15q11.1c"; transcript_id "ERVLB4_15q11.1c"; locus "ERVLB4_15q11.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1469"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### HUERSP1_15q11.2 ### chr15 rmsk gene 20601976 20608903 . + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0167"; model_cov "5595"; model_pct "89.3"; chr15 rmsk exon 20601976 20603427 7191 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "-4602"; repStart "10"; chr15 rmsk exon 20603539 20604593 7191 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "-3399"; repStart "1662"; chr15 rmsk exon 20604886 20605666 7191 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "3611"; repFamily "ERV1"; repLeft "-2652"; repStart "2865"; chr15 rmsk exon 20605978 20608216 7223 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4267"; chr15 rmsk exon 20608217 20608360 861 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "133"; repFamily "ERV1"; repLeft "-558"; repStart "1"; chr15 rmsk exon 20608358 20608557 970 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "538"; repFamily "ERV1"; repLeft "-153"; repStart "333"; chr15 rmsk exon 20608856 20608903 970 + . gene_id "HUERSP1_15q11.2"; transcript_id "HUERSP1_15q11.2"; locus "HUERSP1_15q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0167"; repClass "LTR"; repEnd "586"; repFamily "ERV1"; repLeft "-105"; repStart "539"; ### MER4_15q11.2a ### chr15 rmsk gene 20830382 20831317 . - . gene_id "MER4_15q11.2a"; transcript_id "MER4_15q11.2a"; locus "MER4_15q11.2a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0686"; model_cov "1068"; model_pct "16.2"; chr15 rmsk exon 20830382 20831317 2280 - . gene_id "MER4_15q11.2a"; transcript_id "MER4_15q11.2a"; locus "MER4_15q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0686"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "29"; repStart "-5501"; ### HERVL_15q11.2 ### chr15 rmsk gene 21048053 21049862 . + . gene_id "HERVL_15q11.2"; transcript_id "HERVL_15q11.2"; locus "HERVL_15q11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1118"; model_cov "1396"; model_pct "24.7"; chr15 rmsk exon 21048053 21049434 10173 + . gene_id "HERVL_15q11.2"; transcript_id "HERVL_15q11.2"; locus "HERVL_15q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1118"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr15 rmsk exon 21049435 21049862 2977 + . gene_id "HERVL_15q11.2"; transcript_id "HERVL_15q11.2"; locus "HERVL_15q11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1118"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "-35"; repStart "-101"; ### ERVLB4_15q11.2a ### chr15 rmsk gene 21126243 21127360 . - . gene_id "ERVLB4_15q11.2a"; transcript_id "ERVLB4_15q11.2a"; locus "ERVLB4_15q11.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1470"; model_cov "1019"; model_pct "17.8"; chr15 rmsk exon 21126243 21127049 3453 - . gene_id "ERVLB4_15q11.2a"; transcript_id "ERVLB4_15q11.2a"; locus "ERVLB4_15q11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1470"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr15 rmsk exon 21127173 21127360 1034 - . gene_id "ERVLB4_15q11.2a"; transcript_id "ERVLB4_15q11.2a"; locus "ERVLB4_15q11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1470"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; ### ERVLB4_15q11.2b ### chr15 rmsk gene 21182511 21183054 . - . gene_id "ERVLB4_15q11.2b"; transcript_id "ERVLB4_15q11.2b"; locus "ERVLB4_15q11.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1471"; model_cov "580"; model_pct "10.2"; chr15 rmsk exon 21182511 21183054 3062 - . gene_id "ERVLB4_15q11.2b"; transcript_id "ERVLB4_15q11.2b"; locus "ERVLB4_15q11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1471"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "4782"; repStart "-352"; ### MER4_15q11.2b ### chr15 rmsk gene 21403950 21404886 . - . gene_id "MER4_15q11.2b"; transcript_id "MER4_15q11.2b"; locus "MER4_15q11.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0687"; model_cov "958"; model_pct "14.5"; chr15 rmsk exon 21403950 21404334 669 - . gene_id "MER4_15q11.2b"; transcript_id "MER4_15q11.2b"; locus "MER4_15q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0687"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "762"; repStart "-5501"; chr15 rmsk exon 21404341 21404886 2092 - . gene_id "MER4_15q11.2b"; transcript_id "MER4_15q11.2b"; locus "MER4_15q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0687"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### ERV316A3_15q11.2a ### chr15 rmsk gene 21593404 21594120 . - . gene_id "ERV316A3_15q11.2a"; transcript_id "ERV316A3_15q11.2a"; locus "ERV316A3_15q11.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2344"; model_cov "733"; model_pct "14.0"; chr15 rmsk exon 21593404 21594120 1090 - . gene_id "ERV316A3_15q11.2a"; transcript_id "ERV316A3_15q11.2a"; locus "ERV316A3_15q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2344"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "3403"; repStart "-1090"; ### HERVL74_15q11.2a ### chr15 rmsk gene 21695842 21699617 . - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0087"; model_cov "3491"; model_pct "61.4"; chr15 rmsk exon 21695842 21696188 805 - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0087"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "60"; repStart "-212"; chr15 rmsk exon 21696247 21696450 633 - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0087"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "5393"; repStart "-88"; chr15 rmsk exon 21696469 21697092 1063 - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0087"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "4611"; repStart "-417"; chr15 rmsk exon 21697118 21697295 522 - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0087"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "3890"; repStart "-1621"; chr15 rmsk exon 21697300 21699617 4025 - . gene_id "HERVL74_15q11.2a"; transcript_id "HERVL74_15q11.2a"; locus "HERVL74_15q11.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0087"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "1196"; repStart "-2033"; ### HERVL32_15q11.2a ### chr15 rmsk gene 21713163 21714889 . - . gene_id "HERVL32_15q11.2a"; transcript_id "HERVL32_15q11.2a"; locus "HERVL32_15q11.2a"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0042"; model_cov "1767"; model_pct "51.7"; chr15 rmsk exon 21713163 21714214 3173 - . gene_id "HERVL32_15q11.2a"; transcript_id "HERVL32_15q11.2a"; locus "HERVL32_15q11.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0042"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1627"; repStart "-738"; chr15 rmsk exon 21714208 21714889 1150 - . gene_id "HERVL32_15q11.2a"; transcript_id "HERVL32_15q11.2a"; locus "HERVL32_15q11.2a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0042"; repClass "LTR"; repEnd "1326"; repFamily "ERVL"; repLeft "612"; repStart "-2092"; ### HERVL32_15q11.2b ### chr15 rmsk gene 21715010 21716557 . - . gene_id "HERVL32_15q11.2b"; transcript_id "HERVL32_15q11.2b"; locus "HERVL32_15q11.2b"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0043"; model_cov "1118"; model_pct "32.7"; chr15 rmsk exon 21715010 21715566 1747 - . gene_id "HERVL32_15q11.2b"; transcript_id "HERVL32_15q11.2b"; locus "HERVL32_15q11.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0043"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "2309"; repStart "-562"; chr15 rmsk exon 21715576 21716109 919 - . gene_id "HERVL32_15q11.2b"; transcript_id "HERVL32_15q11.2b"; locus "HERVL32_15q11.2b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0043"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "19"; repStart "-2828"; chr15 rmsk exon 21716128 21716557 1821 - . gene_id "HERVL32_15q11.2b"; transcript_id "HERVL32_15q11.2b"; locus "HERVL32_15q11.2b"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0043"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4_15q11.2c ### chr15 rmsk gene 21841337 21842272 . - . gene_id "MER4_15q11.2c"; transcript_id "MER4_15q11.2c"; locus "MER4_15q11.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0688"; model_cov "958"; model_pct "14.5"; chr15 rmsk exon 21841337 21841720 659 - . gene_id "MER4_15q11.2c"; transcript_id "MER4_15q11.2c"; locus "MER4_15q11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0688"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "762"; repStart "-5501"; chr15 rmsk exon 21841727 21842272 2092 - . gene_id "MER4_15q11.2c"; transcript_id "MER4_15q11.2c"; locus "MER4_15q11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0688"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### ERV316A3_15q11.2b ### chr15 rmsk gene 22028723 22029439 . - . gene_id "ERV316A3_15q11.2b"; transcript_id "ERV316A3_15q11.2b"; locus "ERV316A3_15q11.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2345"; model_cov "733"; model_pct "14.0"; chr15 rmsk exon 22028723 22029439 1060 - . gene_id "ERV316A3_15q11.2b"; transcript_id "ERV316A3_15q11.2b"; locus "ERV316A3_15q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2345"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "3403"; repStart "-1090"; ### HERVL74_15q11.2b ### chr15 rmsk gene 22138324 22142099 . - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0089"; model_cov "3491"; model_pct "61.4"; chr15 rmsk exon 22138324 22138670 805 - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0089"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "60"; repStart "-212"; chr15 rmsk exon 22138729 22138932 633 - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0089"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "5393"; repStart "-88"; chr15 rmsk exon 22138951 22139574 1063 - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0089"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "4611"; repStart "-417"; chr15 rmsk exon 22139600 22139777 522 - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0089"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "3890"; repStart "-1621"; chr15 rmsk exon 22139782 22142099 4025 - . gene_id "HERVL74_15q11.2b"; transcript_id "HERVL74_15q11.2b"; locus "HERVL74_15q11.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0089"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "1196"; repStart "-2033"; ### HERVL32_15q11.2c ### chr15 rmsk gene 22155786 22157512 . - . gene_id "HERVL32_15q11.2c"; transcript_id "HERVL32_15q11.2c"; locus "HERVL32_15q11.2c"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0044"; model_cov "1767"; model_pct "51.7"; chr15 rmsk exon 22155786 22156837 3173 - . gene_id "HERVL32_15q11.2c"; transcript_id "HERVL32_15q11.2c"; locus "HERVL32_15q11.2c"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0044"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1627"; repStart "-738"; chr15 rmsk exon 22156831 22157512 1150 - . gene_id "HERVL32_15q11.2c"; transcript_id "HERVL32_15q11.2c"; locus "HERVL32_15q11.2c"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0044"; repClass "LTR"; repEnd "1326"; repFamily "ERVL"; repLeft "612"; repStart "-2092"; ### HERVL32_15q11.2d ### chr15 rmsk gene 22157633 22159180 . - . gene_id "HERVL32_15q11.2d"; transcript_id "HERVL32_15q11.2d"; locus "HERVL32_15q11.2d"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0045"; model_cov "1118"; model_pct "32.7"; chr15 rmsk exon 22157633 22158189 1747 - . gene_id "HERVL32_15q11.2d"; transcript_id "HERVL32_15q11.2d"; locus "HERVL32_15q11.2d"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0045"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "2309"; repStart "-562"; chr15 rmsk exon 22158199 22158732 919 - . gene_id "HERVL32_15q11.2d"; transcript_id "HERVL32_15q11.2d"; locus "HERVL32_15q11.2d"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0045"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "19"; repStart "-2828"; chr15 rmsk exon 22158751 22159180 1805 - . gene_id "HERVL32_15q11.2d"; transcript_id "HERVL32_15q11.2d"; locus "HERVL32_15q11.2d"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0045"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_15q11.2c ### chr15 rmsk gene 23469077 23475176 . - . gene_id "ERVLB4_15q11.2c"; transcript_id "ERVLB4_15q11.2c"; locus "ERVLB4_15q11.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1473"; model_cov "4763"; model_pct "83.4"; chr15 rmsk exon 23469077 23469559 1656 - . gene_id "ERVLB4_15q11.2c"; transcript_id "ERVLB4_15q11.2c"; locus "ERVLB4_15q11.2c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1473"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "1"; repStart "-10"; chr15 rmsk exon 23469563 23470456 3674 - . gene_id "ERVLB4_15q11.2c"; transcript_id "ERVLB4_15q11.2c"; locus "ERVLB4_15q11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1473"; repClass "LTR"; repEnd "5711"; repFamily "ERVL"; repLeft "4767"; repStart "-3"; chr15 rmsk exon 23471210 23473309 17819 - . gene_id "ERVLB4_15q11.2c"; transcript_id "ERVLB4_15q11.2c"; locus "ERVLB4_15q11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1473"; repClass "LTR"; repEnd "4770"; repFamily "ERVL"; repLeft "2633"; repStart "-944"; chr15 rmsk exon 23473520 23475176 17819 - . gene_id "ERVLB4_15q11.2c"; transcript_id "ERVLB4_15q11.2c"; locus "ERVLB4_15q11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1473"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "950"; repStart "-3082"; ### MER61_15q11.2a ### chr15 rmsk gene 23477468 23480402 . + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0326"; model_cov "1986"; model_pct "38.1"; chr15 rmsk exon 23477468 23477814 1746 + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0326"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 23478135 23478297 1260 + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0326"; repClass "LTR"; repEnd "423"; repFamily "ERV1"; repLeft "-4794"; repStart "246"; chr15 rmsk exon 23478610 23478782 1260 + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0326"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "424"; chr15 rmsk exon 23478763 23479386 3987 + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0326"; repClass "LTR"; repEnd "2022"; repFamily "ERV1"; repLeft "-3195"; repStart "1396"; chr15 rmsk exon 23479376 23480402 7277 + . gene_id "MER61_15q11.2a"; transcript_id "MER61_15q11.2a"; locus "MER61_15q11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0326"; repClass "LTR"; repEnd "3988"; repFamily "ERV1"; repLeft "-1229"; repStart "2948"; ### MER61_15q11.2b ### chr15 rmsk gene 23480903 23483841 . + . gene_id "MER61_15q11.2b"; transcript_id "MER61_15q11.2b"; locus "MER61_15q11.2b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0327"; model_cov "1650"; model_pct "31.6"; chr15 rmsk exon 23480903 23480966 2436 + . gene_id "MER61_15q11.2b"; transcript_id "MER61_15q11.2b"; locus "MER61_15q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0327"; repClass "LTR"; repEnd "2142"; repFamily "ERV1"; repLeft "-3075"; repStart "2079"; chr15 rmsk exon 23481265 23481812 2436 + . gene_id "MER61_15q11.2b"; transcript_id "MER61_15q11.2b"; locus "MER61_15q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0327"; repClass "LTR"; repEnd "2715"; repFamily "ERV1"; repLeft "-2502"; repStart "2143"; chr15 rmsk exon 23482861 23483841 4117 + . gene_id "MER61_15q11.2b"; transcript_id "MER61_15q11.2b"; locus "MER61_15q11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0327"; repClass "LTR"; repEnd "4743"; repFamily "ERV1"; repLeft "-474"; repStart "3728"; ### HERVL74_15q11.2c ### chr15 rmsk gene 23496691 23499273 . - . gene_id "HERVL74_15q11.2c"; transcript_id "HERVL74_15q11.2c"; locus "HERVL74_15q11.2c"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0091"; model_cov "1610"; model_pct "28.3"; chr15 rmsk exon 23496691 23497730 3838 - . gene_id "HERVL74_15q11.2c"; transcript_id "HERVL74_15q11.2c"; locus "HERVL74_15q11.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0091"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "3875"; repStart "-809"; chr15 rmsk exon 23498685 23498984 1005 - . gene_id "HERVL74_15q11.2c"; transcript_id "HERVL74_15q11.2c"; locus "HERVL74_15q11.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0091"; repClass "LTR"; repEnd "3851"; repFamily "ERVL"; repLeft "3536"; repStart "-1834"; chr15 rmsk exon 23498996 23499273 886 - . gene_id "HERVL74_15q11.2c"; transcript_id "HERVL74_15q11.2c"; locus "HERVL74_15q11.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0091"; repClass "LTR"; repEnd "3424"; repFamily "ERVL"; repLeft "3130"; repStart "-2261"; ### LTR25_15q11.2 ### chr15 rmsk gene 23504112 23511588 . - . gene_id "LTR25_15q11.2"; transcript_id "LTR25_15q11.2"; locus "LTR25_15q11.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0111"; model_cov "8207"; model_pct "100.0"; chr15 rmsk exon 23504112 23505837 14441 - . gene_id "LTR25_15q11.2"; transcript_id "LTR25_15q11.2"; locus "LTR25_15q11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0111"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "5473"; repStart "-3"; chr15 rmsk exon 23506140 23507891 15173 - . gene_id "LTR25_15q11.2"; transcript_id "LTR25_15q11.2"; locus "LTR25_15q11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0111"; repClass "LTR"; repEnd "5472"; repFamily "ERV1"; repLeft "2761"; repStart "-1716"; chr15 rmsk exon 23508205 23511588 15173 - . gene_id "LTR25_15q11.2"; transcript_id "LTR25_15q11.2"; locus "LTR25_15q11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0111"; repClass "LTR"; repEnd "3814"; repFamily "ERV1"; repLeft "30"; repStart "-3374"; ### HERVL74_15q11.2d ### chr15 rmsk gene 23538428 23540642 . + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0094"; model_cov "2213"; model_pct "38.9"; chr15 rmsk exon 23538428 23538637 669 + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0094"; repClass "LTR"; repEnd "1276"; repFamily "ERVL"; repLeft "-4409"; repStart "1053"; chr15 rmsk exon 23538632 23539741 4612 + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0094"; repClass "LTR"; repEnd "3335"; repFamily "ERVL"; repLeft "-2350"; repStart "2239"; chr15 rmsk exon 23539736 23539888 845 + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0094"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3486"; chr15 rmsk exon 23539891 23540013 514 + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0094"; repClass "LTR"; repEnd "4039"; repFamily "ERVL"; repLeft "-1646"; repStart "3918"; chr15 rmsk exon 23540027 23540642 1562 + . gene_id "HERVL74_15q11.2d"; transcript_id "HERVL74_15q11.2d"; locus "HERVL74_15q11.2d"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0094"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-464"; repStart "4605"; ### ERVLB4_15q11.2d ### chr15 rmsk gene 23544674 23546901 . - . gene_id "ERVLB4_15q11.2d"; transcript_id "ERVLB4_15q11.2d"; locus "ERVLB4_15q11.2d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1475"; model_cov "1413"; model_pct "24.7"; chr15 rmsk exon 23544674 23544901 1003 - . gene_id "ERVLB4_15q11.2d"; transcript_id "ERVLB4_15q11.2d"; locus "ERVLB4_15q11.2d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1475"; repClass "LTR"; repEnd "304"; repFamily "ERVL"; repLeft "82"; repStart "-110"; chr15 rmsk exon 23545545 23546553 4939 - . gene_id "ERVLB4_15q11.2d"; transcript_id "ERVLB4_15q11.2d"; locus "ERVLB4_15q11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1475"; repClass "LTR"; repEnd "5238"; repFamily "ERVL"; repLeft "4228"; repStart "-476"; chr15 rmsk exon 23546551 23546901 3767 - . gene_id "ERVLB4_15q11.2d"; transcript_id "ERVLB4_15q11.2d"; locus "ERVLB4_15q11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1475"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "3406"; repStart "-1905"; ### ERVLB4_15q11.2e ### chr15 rmsk gene 23547017 23547783 . - . gene_id "ERVLB4_15q11.2e"; transcript_id "ERVLB4_15q11.2e"; locus "ERVLB4_15q11.2e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1476"; model_cov "884"; model_pct "15.5"; chr15 rmsk exon 23547017 23547783 3767 - . gene_id "ERVLB4_15q11.2e"; transcript_id "ERVLB4_15q11.2e"; locus "ERVLB4_15q11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1476"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "2925"; repStart "-1905"; ### HML3_15q11.2 ### chr15 rmsk gene 23695617 23701966 . - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0191"; model_cov "5039"; model_pct "83.7"; chr15 rmsk exon 23695617 23696124 4110 - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0191"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr15 rmsk exon 23696128 23700459 36214 - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0191"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "1684"; repStart "-2"; chr15 rmsk exon 23700762 23700808 36214 - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0191"; repClass "LTR"; repEnd "1683"; repFamily "ERVK"; repLeft "1637"; repStart "-4338"; chr15 rmsk exon 23700809 23701456 4919 - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0191"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "16"; repStart "-5347"; chr15 rmsk exon 23701473 23701966 3994 - . gene_id "HML3_15q11.2"; transcript_id "HML3_15q11.2"; locus "HML3_15q11.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0191"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_15q11.2f ### chr15 rmsk gene 23981589 23982626 . - . gene_id "ERVLB4_15q11.2f"; transcript_id "ERVLB4_15q11.2f"; locus "ERVLB4_15q11.2f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1477"; model_cov "609"; model_pct "10.7"; chr15 rmsk exon 23981589 23982045 1130 - . gene_id "ERVLB4_15q11.2f"; transcript_id "ERVLB4_15q11.2f"; locus "ERVLB4_15q11.2f"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1477"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "2"; repStart "-110"; chr15 rmsk exon 23982049 23982626 2493 - . gene_id "ERVLB4_15q11.2f"; transcript_id "ERVLB4_15q11.2f"; locus "ERVLB4_15q11.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1477"; repClass "LTR"; repEnd "5701"; repFamily "ERVL"; repLeft "5092"; repStart "-13"; ### ERVLB4_15q11.2g ### chr15 rmsk gene 23995873 23997597 . - . gene_id "ERVLB4_15q11.2g"; transcript_id "ERVLB4_15q11.2g"; locus "ERVLB4_15q11.2g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1478"; model_cov "1735"; model_pct "30.4"; chr15 rmsk exon 23995873 23996037 775 - . gene_id "ERVLB4_15q11.2g"; transcript_id "ERVLB4_15q11.2g"; locus "ERVLB4_15q11.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1478"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "4928"; repStart "-617"; chr15 rmsk exon 23996034 23997597 6421 - . gene_id "ERVLB4_15q11.2g"; transcript_id "ERVLB4_15q11.2g"; locus "ERVLB4_15q11.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1478"; repClass "LTR"; repEnd "4773"; repFamily "ERVL"; repLeft "3207"; repStart "-941"; ### ERVLB4_15q11.2h ### chr15 rmsk gene 24001954 24005106 . - . gene_id "ERVLB4_15q11.2h"; transcript_id "ERVLB4_15q11.2h"; locus "ERVLB4_15q11.2h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1479"; model_cov "2279"; model_pct "39.9"; chr15 rmsk exon 24001954 24004103 9656 - . gene_id "ERVLB4_15q11.2h"; transcript_id "ERVLB4_15q11.2h"; locus "ERVLB4_15q11.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1479"; repClass "LTR"; repEnd "2814"; repFamily "ERVL"; repLeft "535"; repStart "-2900"; chr15 rmsk exon 24004698 24005106 1924 - . gene_id "ERVLB4_15q11.2h"; transcript_id "ERVLB4_15q11.2h"; locus "ERVLB4_15q11.2h"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1479"; repClass "LTR"; repEnd "542"; repFamily "ERVL"; repLeft "142"; repStart "-12"; ### HERV4_15q11.2 ### chr15 rmsk gene 24030131 24032173 . - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0112"; model_cov "1220"; model_pct "18.7"; chr15 rmsk exon 24030131 24030490 1753 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr15 rmsk exon 24030491 24030612 742 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "6415"; repStart "0"; chr15 rmsk exon 24030616 24030689 432 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "951"; repStart "-5515"; chr15 rmsk exon 24030688 24031772 4489 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "1"; repStart "-5515"; chr15 rmsk exon 24031773 24032093 1437 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "377"; repFamily "ERV1"; repLeft "53"; repStart "0"; chr15 rmsk exon 24032109 24032173 231 - . gene_id "HERV4_15q11.2"; transcript_id "HERV4_15q11.2"; locus "HERV4_15q11.2"; repName "MER51B"; geneRegion "ltr"; locid "HERV4_I-int_0112"; repClass "LTR"; repEnd "-177"; repFamily "ERV1"; repLeft "-256"; repStart "-554"; ### PRIMA41_15q11.2a ### chr15 rmsk gene 24034914 24036049 . + . gene_id "PRIMA41_15q11.2a"; transcript_id "PRIMA41_15q11.2a"; locus "PRIMA41_15q11.2a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0116"; model_cov "1153"; model_pct "14.9"; chr15 rmsk exon 24034914 24036049 5771 + . gene_id "PRIMA41_15q11.2a"; transcript_id "PRIMA41_15q11.2a"; locus "PRIMA41_15q11.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0116"; repClass "LTR"; repEnd "3893"; repFamily "ERV1"; repLeft "-3863"; repStart "2740"; ### MER41_15q11.2a ### chr15 rmsk gene 24063543 24067233 . - . gene_id "MER41_15q11.2a"; transcript_id "MER41_15q11.2a"; locus "MER41_15q11.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0454"; model_cov "2413"; model_pct "40.6"; chr15 rmsk exon 24063543 24063648 592 - . gene_id "MER41_15q11.2a"; transcript_id "MER41_15q11.2a"; locus "MER41_15q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0454"; repClass "LTR"; repEnd "4714"; repFamily "ERV1"; repLeft "4611"; repStart "-1232"; chr15 rmsk exon 24064901 24067112 8148 - . gene_id "MER41_15q11.2a"; transcript_id "MER41_15q11.2a"; locus "MER41_15q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0454"; repClass "LTR"; repEnd "3359"; repFamily "ERV1"; repLeft "1169"; repStart "-2587"; chr15 rmsk exon 24067113 24067233 555 - . gene_id "MER41_15q11.2a"; transcript_id "MER41_15q11.2a"; locus "MER41_15q11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0454"; repClass "LTR"; repEnd "1650"; repFamily "ERV1"; repLeft "1530"; repStart "-4296"; ### HERVFRD_15q11.2 ### chr15 rmsk gene 24067228 24069565 . - . gene_id "HERVFRD_15q11.2"; transcript_id "HERVFRD_15q11.2"; locus "HERVFRD_15q11.2"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0157"; model_cov "1785"; model_pct "24.8"; chr15 rmsk exon 24067228 24068922 5035 - . gene_id "HERVFRD_15q11.2"; transcript_id "HERVFRD_15q11.2"; locus "HERVFRD_15q11.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0157"; repClass "LTR"; repEnd "1789"; repFamily "ERV1"; repLeft "4"; repStart "-5416"; chr15 rmsk exon 24068939 24069325 1576 - . gene_id "HERVFRD_15q11.2"; transcript_id "HERVFRD_15q11.2"; locus "HERVFRD_15q11.2"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0157"; repClass "LTR"; repEnd "670"; repFamily "ERV1"; repLeft "308"; repStart "-27"; chr15 rmsk exon 24069341 24069565 1012 - . gene_id "HERVFRD_15q11.2"; transcript_id "HERVFRD_15q11.2"; locus "HERVFRD_15q11.2"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0157"; repClass "LTR"; repEnd "209"; repFamily "ERV1"; repLeft "1"; repStart "-488"; ### ERVLB4_15q11.2i ### chr15 rmsk gene 24069566 24072097 . - . gene_id "ERVLB4_15q11.2i"; transcript_id "ERVLB4_15q11.2i"; locus "ERVLB4_15q11.2i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1481"; model_cov "2215"; model_pct "38.8"; chr15 rmsk exon 24069566 24071672 7347 - . gene_id "ERVLB4_15q11.2i"; transcript_id "ERVLB4_15q11.2i"; locus "ERVLB4_15q11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1481"; repClass "LTR"; repEnd "2217"; repFamily "ERVL"; repLeft "115"; repStart "-3497"; chr15 rmsk exon 24071976 24072097 7347 - . gene_id "ERVLB4_15q11.2i"; transcript_id "ERVLB4_15q11.2i"; locus "ERVLB4_15q11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1481"; repClass "LTR"; repEnd "114"; repFamily "ERVL"; repLeft "1"; repStart "-5600"; ### ERVLB4_15q11.2j ### chr15 rmsk gene 24083063 24089605 . - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1482"; model_cov "4819"; model_pct "84.3"; chr15 rmsk exon 24083063 24083906 3106 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4230"; repStart "-630"; chr15 rmsk exon 24083903 24085060 5416 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "3998"; repFamily "ERVL"; repLeft "2807"; repStart "-1716"; chr15 rmsk exon 24085208 24086061 3614 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "2806"; repFamily "ERVL"; repLeft "1931"; repStart "-2908"; chr15 rmsk exon 24087065 24087680 2262 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "1896"; repFamily "ERVL"; repLeft "1281"; repStart "-3818"; chr15 rmsk exon 24088177 24088453 4079 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1014"; repStart "-4428"; chr15 rmsk exon 24088629 24089605 4079 - . gene_id "ERVLB4_15q11.2j"; transcript_id "ERVLB4_15q11.2j"; locus "ERVLB4_15q11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1482"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "1"; repStart "-4701"; ### ERVL_15q11.2a ### chr15 rmsk gene 24145878 24147077 . - . gene_id "ERVL_15q11.2a"; transcript_id "ERVL_15q11.2a"; locus "ERVL_15q11.2a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0380"; model_cov "617"; model_pct "10.7"; chr15 rmsk exon 24145878 24146472 1787 - . gene_id "ERVL_15q11.2a"; transcript_id "ERVL_15q11.2a"; locus "ERVL_15q11.2a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0380"; repClass "LTR"; repEnd "540"; repFamily "ERVL"; repLeft "-46"; repStart "-14"; chr15 rmsk exon 24146473 24147077 2799 - . gene_id "ERVL_15q11.2a"; transcript_id "ERVL_15q11.2a"; locus "ERVL_15q11.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0380"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5140"; repStart "0"; ### PABLB_15q11.2a ### chr15 rmsk gene 24163766 24168986 . - . gene_id "PABLB_15q11.2a"; transcript_id "PABLB_15q11.2a"; locus "PABLB_15q11.2a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0086"; model_cov "3742"; model_pct "52.5"; chr15 rmsk exon 24163766 24164700 1330 - . gene_id "PABLB_15q11.2a"; transcript_id "PABLB_15q11.2a"; locus "PABLB_15q11.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0086"; repClass "LTR"; repEnd "6615"; repFamily "ERV1"; repLeft "5705"; repStart "-507"; chr15 rmsk exon 24165379 24167609 2458 - . gene_id "PABLB_15q11.2a"; transcript_id "PABLB_15q11.2a"; locus "PABLB_15q11.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0086"; repClass "LTR"; repEnd "4209"; repFamily "ERV1"; repLeft "1983"; repStart "-2913"; chr15 rmsk exon 24168083 24168439 784 - . gene_id "PABLB_15q11.2a"; transcript_id "PABLB_15q11.2a"; locus "PABLB_15q11.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0086"; repClass "LTR"; repEnd "1262"; repFamily "ERV1"; repLeft "909"; repStart "-5860"; chr15 rmsk exon 24168735 24168986 382 - . gene_id "PABLB_15q11.2a"; transcript_id "PABLB_15q11.2a"; locus "PABLB_15q11.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0086"; repClass "LTR"; repEnd "735"; repFamily "ERV1"; repLeft "482"; repStart "-6387"; ### ERVL_15q11.2b ### chr15 rmsk gene 24201892 24203093 . - . gene_id "ERVL_15q11.2b"; transcript_id "ERVL_15q11.2b"; locus "ERVL_15q11.2b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0381"; model_cov "617"; model_pct "10.7"; chr15 rmsk exon 24201892 24202482 1368 - . gene_id "ERVL_15q11.2b"; transcript_id "ERVL_15q11.2b"; locus "ERVL_15q11.2b"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0381"; repClass "LTR"; repEnd "683"; repFamily "ERVL"; repLeft "117"; repStart "-34"; chr15 rmsk exon 24202483 24203093 2797 - . gene_id "ERVL_15q11.2b"; transcript_id "ERVL_15q11.2b"; locus "ERVL_15q11.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0381"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5140"; repStart "0"; ### ERVLB4_15q11.2k ### chr15 rmsk gene 24211553 24214111 . - . gene_id "ERVLB4_15q11.2k"; transcript_id "ERVLB4_15q11.2k"; locus "ERVLB4_15q11.2k"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1483"; model_cov "1961"; model_pct "34.3"; chr15 rmsk exon 24211553 24212253 3339 - . gene_id "ERVLB4_15q11.2k"; transcript_id "ERVLB4_15q11.2k"; locus "ERVLB4_15q11.2k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1483"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4016"; repStart "-996"; chr15 rmsk exon 24212469 24213678 4383 - . gene_id "ERVLB4_15q11.2k"; transcript_id "ERVLB4_15q11.2k"; locus "ERVLB4_15q11.2k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1483"; repClass "LTR"; repEnd "1269"; repFamily "ERVL"; repLeft "10"; repStart "-4445"; chr15 rmsk exon 24213698 24214111 1972 - . gene_id "ERVLB4_15q11.2k"; transcript_id "ERVLB4_15q11.2k"; locus "ERVLB4_15q11.2k"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1483"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "143"; repStart "-8"; ### PRIMA41_15q11.2b ### chr15 rmsk gene 24238628 24239779 . - . gene_id "PRIMA41_15q11.2b"; transcript_id "PRIMA41_15q11.2b"; locus "PRIMA41_15q11.2b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0117"; model_cov "1168"; model_pct "15.1"; chr15 rmsk exon 24238628 24239779 1525 - . gene_id "PRIMA41_15q11.2b"; transcript_id "PRIMA41_15q11.2b"; locus "PRIMA41_15q11.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0117"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "6337"; repStart "-251"; ### PABLB_15q11.2b ### chr15 rmsk gene 24240441 24244040 . - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0087"; model_cov "2469"; model_pct "34.7"; chr15 rmsk exon 24240441 24242114 1517 - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0087"; repClass "LTR"; repEnd "4209"; repFamily "ERV1"; repLeft "2511"; repStart "-2913"; chr15 rmsk exon 24242330 24242417 277 - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0087"; repClass "LTR"; repEnd "2298"; repFamily "ERV1"; repLeft "2207"; repStart "-4824"; chr15 rmsk exon 24242548 24242638 365 - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0087"; repClass "LTR"; repEnd "2077"; repFamily "ERV1"; repLeft "1986"; repStart "-5045"; chr15 rmsk exon 24243132 24243463 627 - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0087"; repClass "LTR"; repEnd "1261"; repFamily "ERV1"; repLeft "932"; repStart "-5861"; chr15 rmsk exon 24243783 24244040 326 - . gene_id "PABLB_15q11.2b"; transcript_id "PABLB_15q11.2b"; locus "PABLB_15q11.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0087"; repClass "LTR"; repEnd "735"; repFamily "ERV1"; repLeft "475"; repStart "-6387"; ### MER101_15q11.2a ### chr15 rmsk gene 24293322 24295254 . - . gene_id "MER101_15q11.2a"; transcript_id "MER101_15q11.2a"; locus "MER101_15q11.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0327"; model_cov "1709"; model_pct "25.7"; chr15 rmsk exon 24293322 24293576 853 - . gene_id "MER101_15q11.2a"; transcript_id "MER101_15q11.2a"; locus "MER101_15q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0327"; repClass "LTR"; repEnd "6512"; repFamily "ERV1"; repLeft "6257"; repStart "-127"; chr15 rmsk exon 24293546 24293722 648 - . gene_id "MER101_15q11.2a"; transcript_id "MER101_15q11.2a"; locus "MER101_15q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0327"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5887"; repStart "-593"; chr15 rmsk exon 24294469 24295254 2347 - . gene_id "MER101_15q11.2a"; transcript_id "MER101_15q11.2a"; locus "MER101_15q11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0327"; repClass "LTR"; repEnd "3739"; repFamily "ERV1"; repLeft "2444"; repStart "-2900"; ### ERVLB4_15q11.2l ### chr15 rmsk gene 24301728 24303199 . - . gene_id "ERVLB4_15q11.2l"; transcript_id "ERVLB4_15q11.2l"; locus "ERVLB4_15q11.2l"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1484"; model_cov "626"; model_pct "11.0"; chr15 rmsk exon 24301728 24302257 1801 - . gene_id "ERVLB4_15q11.2l"; transcript_id "ERVLB4_15q11.2l"; locus "ERVLB4_15q11.2l"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1484"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "1"; repStart "-20"; chr15 rmsk exon 24302258 24302675 1729 - . gene_id "ERVLB4_15q11.2l"; transcript_id "ERVLB4_15q11.2l"; locus "ERVLB4_15q11.2l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1484"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5293"; repStart "0"; chr15 rmsk exon 24302998 24303199 1116 - . gene_id "ERVLB4_15q11.2l"; transcript_id "ERVLB4_15q11.2l"; locus "ERVLB4_15q11.2l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1484"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "5097"; repStart "-412"; ### ERVLB4_15q11.2m ### chr15 rmsk gene 24311308 24316410 . - . gene_id "ERVLB4_15q11.2m"; transcript_id "ERVLB4_15q11.2m"; locus "ERVLB4_15q11.2m"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1485"; model_cov "3507"; model_pct "61.4"; chr15 rmsk exon 24311308 24312006 3455 - . gene_id "ERVLB4_15q11.2m"; transcript_id "ERVLB4_15q11.2m"; locus "ERVLB4_15q11.2m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1485"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4016"; repStart "-996"; chr15 rmsk exon 24313289 24315981 11366 - . gene_id "ERVLB4_15q11.2m"; transcript_id "ERVLB4_15q11.2m"; locus "ERVLB4_15q11.2m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1485"; repClass "LTR"; repEnd "2815"; repFamily "ERVL"; repLeft "10"; repStart "-2899"; chr15 rmsk exon 24316001 24316410 2075 - . gene_id "ERVLB4_15q11.2m"; transcript_id "ERVLB4_15q11.2m"; locus "ERVLB4_15q11.2m"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1485"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "143"; repStart "-8"; ### MER101_15q11.2b ### chr15 rmsk gene 24354673 24356853 . - . gene_id "MER101_15q11.2b"; transcript_id "MER101_15q11.2b"; locus "MER101_15q11.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0328"; model_cov "1776"; model_pct "26.8"; chr15 rmsk exon 24354673 24355046 1134 - . gene_id "MER101_15q11.2b"; transcript_id "MER101_15q11.2b"; locus "MER101_15q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0328"; repClass "LTR"; repEnd "5612"; repFamily "ERV1"; repLeft "4895"; repStart "-1027"; chr15 rmsk exon 24355016 24355192 624 - . gene_id "MER101_15q11.2b"; transcript_id "MER101_15q11.2b"; locus "MER101_15q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0328"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5887"; repStart "-593"; chr15 rmsk exon 24355935 24356853 1619 - . gene_id "MER101_15q11.2b"; transcript_id "MER101_15q11.2b"; locus "MER101_15q11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0328"; repClass "LTR"; repEnd "3739"; repFamily "ERV1"; repLeft "2839"; repStart "-2900"; ### ERVLB4_15q11.2n ### chr15 rmsk gene 24356858 24359086 . - . gene_id "ERVLB4_15q11.2n"; transcript_id "ERVLB4_15q11.2n"; locus "ERVLB4_15q11.2n"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1486"; model_cov "1755"; model_pct "30.7"; chr15 rmsk exon 24356858 24357340 5846 - . gene_id "ERVLB4_15q11.2n"; transcript_id "ERVLB4_15q11.2n"; locus "ERVLB4_15q11.2n"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1486"; repClass "LTR"; repEnd "1758"; repFamily "ERVL"; repLeft "1287"; repStart "-3956"; chr15 rmsk exon 24357636 24357913 5846 - . gene_id "ERVLB4_15q11.2n"; transcript_id "ERVLB4_15q11.2n"; locus "ERVLB4_15q11.2n"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1486"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1014"; repStart "-4428"; chr15 rmsk exon 24358086 24359086 5846 - . gene_id "ERVLB4_15q11.2n"; transcript_id "ERVLB4_15q11.2n"; locus "ERVLB4_15q11.2n"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1486"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "1"; repStart "-4701"; ### PABLB_15q11.2c ### chr15 rmsk gene 24380987 24384478 . - . gene_id "PABLB_15q11.2c"; transcript_id "PABLB_15q11.2c"; locus "PABLB_15q11.2c"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0089"; model_cov "2727"; model_pct "38.3"; chr15 rmsk exon 24380987 24383168 1735 - . gene_id "PABLB_15q11.2c"; transcript_id "PABLB_15q11.2c"; locus "PABLB_15q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0089"; repClass "LTR"; repEnd "4177"; repFamily "ERV1"; repLeft "1986"; repStart "-2945"; chr15 rmsk exon 24383647 24383985 622 - . gene_id "PABLB_15q11.2c"; transcript_id "PABLB_15q11.2c"; locus "PABLB_15q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0089"; repClass "LTR"; repEnd "1261"; repFamily "ERV1"; repLeft "922"; repStart "-5861"; chr15 rmsk exon 24384284 24384478 265 - . gene_id "PABLB_15q11.2c"; transcript_id "PABLB_15q11.2c"; locus "PABLB_15q11.2c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0089"; repClass "LTR"; repEnd "735"; repFamily "ERV1"; repLeft "538"; repStart "-6387"; ### MER101_15q11.2c ### chr15 rmsk gene 24408914 24411086 . - . gene_id "MER101_15q11.2c"; transcript_id "MER101_15q11.2c"; locus "MER101_15q11.2c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0329"; model_cov "1434"; model_pct "21.6"; chr15 rmsk exon 24408914 24409278 1477 - . gene_id "MER101_15q11.2c"; transcript_id "MER101_15q11.2c"; locus "MER101_15q11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0329"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "6257"; repStart "-3"; chr15 rmsk exon 24409248 24409424 647 - . gene_id "MER101_15q11.2c"; transcript_id "MER101_15q11.2c"; locus "MER101_15q11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0329"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5887"; repStart "-593"; chr15 rmsk exon 24410163 24411086 2426 - . gene_id "MER101_15q11.2c"; transcript_id "MER101_15q11.2c"; locus "MER101_15q11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0329"; repClass "LTR"; repEnd "3722"; repFamily "ERV1"; repLeft "2826"; repStart "-2917"; ### ERVLB4_15q11.2o ### chr15 rmsk gene 24411091 24413327 . - . gene_id "ERVLB4_15q11.2o"; transcript_id "ERVLB4_15q11.2o"; locus "ERVLB4_15q11.2o"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1487"; model_cov "1755"; model_pct "30.7"; chr15 rmsk exon 24411091 24411573 6564 - . gene_id "ERVLB4_15q11.2o"; transcript_id "ERVLB4_15q11.2o"; locus "ERVLB4_15q11.2o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1487"; repClass "LTR"; repEnd "1758"; repFamily "ERVL"; repLeft "1283"; repStart "-3956"; chr15 rmsk exon 24411875 24412152 6564 - . gene_id "ERVLB4_15q11.2o"; transcript_id "ERVLB4_15q11.2o"; locus "ERVLB4_15q11.2o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1487"; repClass "LTR"; repEnd "1282"; repFamily "ERVL"; repLeft "1014"; repStart "-4432"; chr15 rmsk exon 24412325 24413327 6564 - . gene_id "ERVLB4_15q11.2o"; transcript_id "ERVLB4_15q11.2o"; locus "ERVLB4_15q11.2o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1487"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "1"; repStart "-4701"; ### MER101_15q11.2d ### chr15 rmsk gene 24463741 24464657 . - . gene_id "MER101_15q11.2d"; transcript_id "MER101_15q11.2d"; locus "MER101_15q11.2d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0330"; model_cov "931"; model_pct "14.0"; chr15 rmsk exon 24463741 24464657 1539 - . gene_id "MER101_15q11.2d"; transcript_id "MER101_15q11.2d"; locus "MER101_15q11.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0330"; repClass "LTR"; repEnd "3770"; repFamily "ERV1"; repLeft "2839"; repStart "-2869"; ### ERVLB4_15q11.2p ### chr15 rmsk gene 24464662 24466901 . - . gene_id "ERVLB4_15q11.2p"; transcript_id "ERVLB4_15q11.2p"; locus "ERVLB4_15q11.2p"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1488"; model_cov "1754"; model_pct "30.7"; chr15 rmsk exon 24464662 24465143 5981 - . gene_id "ERVLB4_15q11.2p"; transcript_id "ERVLB4_15q11.2p"; locus "ERVLB4_15q11.2p"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1488"; repClass "LTR"; repEnd "1758"; repFamily "ERVL"; repLeft "1287"; repStart "-3956"; chr15 rmsk exon 24465450 24465727 5981 - . gene_id "ERVLB4_15q11.2p"; transcript_id "ERVLB4_15q11.2p"; locus "ERVLB4_15q11.2p"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1488"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1014"; repStart "-4428"; chr15 rmsk exon 24465902 24466901 5981 - . gene_id "ERVLB4_15q11.2p"; transcript_id "ERVLB4_15q11.2p"; locus "ERVLB4_15q11.2p"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1488"; repClass "LTR"; repEnd "1013"; repFamily "ERVL"; repLeft "2"; repStart "-4701"; ### MER101_15q11.2e ### chr15 rmsk gene 24501091 24503083 . - . gene_id "MER101_15q11.2e"; transcript_id "MER101_15q11.2e"; locus "MER101_15q11.2e"; category "internal"; intModel "MER101-int"; locid "MER101-int_0331"; model_cov "1764"; model_pct "26.6"; chr15 rmsk exon 24501091 24501465 1322 - . gene_id "MER101_15q11.2e"; transcript_id "MER101_15q11.2e"; locus "MER101_15q11.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0331"; repClass "LTR"; repEnd "5615"; repFamily "ERV1"; repLeft "4895"; repStart "-1024"; chr15 rmsk exon 24501435 24501611 599 - . gene_id "MER101_15q11.2e"; transcript_id "MER101_15q11.2e"; locus "MER101_15q11.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0331"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5887"; repStart "-593"; chr15 rmsk exon 24502353 24503083 2301 - . gene_id "MER101_15q11.2e"; transcript_id "MER101_15q11.2e"; locus "MER101_15q11.2e"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0331"; repClass "LTR"; repEnd "3724"; repFamily "ERV1"; repLeft "2839"; repStart "-2915"; ### ERVLB4_15q11.2q ### chr15 rmsk gene 24509438 24510910 . - . gene_id "ERVLB4_15q11.2q"; transcript_id "ERVLB4_15q11.2q"; locus "ERVLB4_15q11.2q"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1489"; model_cov "616"; model_pct "10.8"; chr15 rmsk exon 24509438 24509967 1617 - . gene_id "ERVLB4_15q11.2q"; transcript_id "ERVLB4_15q11.2q"; locus "ERVLB4_15q11.2q"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1489"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "1"; repStart "-20"; chr15 rmsk exon 24509968 24510401 2423 - . gene_id "ERVLB4_15q11.2q"; transcript_id "ERVLB4_15q11.2q"; locus "ERVLB4_15q11.2q"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1489"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5300"; repStart "0"; chr15 rmsk exon 24510708 24510910 2423 - . gene_id "ERVLB4_15q11.2q"; transcript_id "ERVLB4_15q11.2q"; locus "ERVLB4_15q11.2q"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1489"; repClass "LTR"; repEnd "5299"; repFamily "ERVL"; repLeft "5097"; repStart "-415"; ### ERVLB4_15q11.2r ### chr15 rmsk gene 24518365 24523479 . - . gene_id "ERVLB4_15q11.2r"; transcript_id "ERVLB4_15q11.2r"; locus "ERVLB4_15q11.2r"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1490"; model_cov "3507"; model_pct "61.4"; chr15 rmsk exon 24518365 24519064 3231 - . gene_id "ERVLB4_15q11.2r"; transcript_id "ERVLB4_15q11.2r"; locus "ERVLB4_15q11.2r"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1490"; repClass "LTR"; repEnd "4718"; repFamily "ERVL"; repLeft "4016"; repStart "-996"; chr15 rmsk exon 24520356 24523051 10411 - . gene_id "ERVLB4_15q11.2r"; transcript_id "ERVLB4_15q11.2r"; locus "ERVLB4_15q11.2r"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1490"; repClass "LTR"; repEnd "2815"; repFamily "ERVL"; repLeft "10"; repStart "-2899"; chr15 rmsk exon 24523071 24523479 1523 - . gene_id "ERVLB4_15q11.2r"; transcript_id "ERVLB4_15q11.2r"; locus "ERVLB4_15q11.2r"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1490"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "139"; repStart "-8"; ### PRIMA41_15q11.2c ### chr15 rmsk gene 24551762 24552613 . - . gene_id "PRIMA41_15q11.2c"; transcript_id "PRIMA41_15q11.2c"; locus "PRIMA41_15q11.2c"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0122"; model_cov "854"; model_pct "11.0"; chr15 rmsk exon 24551762 24552613 1479 - . gene_id "PRIMA41_15q11.2c"; transcript_id "PRIMA41_15q11.2c"; locus "PRIMA41_15q11.2c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0122"; repClass "LTR"; repEnd "7454"; repFamily "ERV1"; repLeft "6600"; repStart "-302"; ### PABLB_15q11.2d ### chr15 rmsk gene 24553518 24556590 . - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0090"; model_cov "2150"; model_pct "30.2"; chr15 rmsk exon 24553518 24554522 1617 - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0090"; repClass "LTR"; repEnd "4208"; repFamily "ERV1"; repLeft "3181"; repStart "-2914"; chr15 rmsk exon 24554560 24555203 1617 - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0090"; repClass "LTR"; repEnd "3180"; repFamily "ERV1"; repLeft "2611"; repStart "-3942"; chr15 rmsk exon 24555428 24555547 260 - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0090"; repClass "LTR"; repEnd "2338"; repFamily "ERV1"; repLeft "2214"; repStart "-4784"; chr15 rmsk exon 24555683 24555773 365 - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0090"; repClass "LTR"; repEnd "2077"; repFamily "ERV1"; repLeft "1986"; repStart "-5045"; chr15 rmsk exon 24556252 24556590 647 - . gene_id "PABLB_15q11.2d"; transcript_id "PABLB_15q11.2d"; locus "PABLB_15q11.2d"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0090"; repClass "LTR"; repEnd "1261"; repFamily "ERV1"; repLeft "922"; repStart "-5861"; ### MER41_15q11.2b ### chr15 rmsk gene 24591098 24593048 . - . gene_id "MER41_15q11.2b"; transcript_id "MER41_15q11.2b"; locus "MER41_15q11.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0455"; model_cov "1790"; model_pct "30.1"; chr15 rmsk exon 24591098 24592699 4922 - . gene_id "MER41_15q11.2b"; transcript_id "MER41_15q11.2b"; locus "MER41_15q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0455"; repClass "LTR"; repEnd "1719"; repFamily "ERV1"; repLeft "145"; repStart "-4227"; chr15 rmsk exon 24592840 24593048 875 - . gene_id "MER41_15q11.2b"; transcript_id "MER41_15q11.2b"; locus "MER41_15q11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0455"; repClass "LTR"; repEnd "-100"; repFamily "ERV1"; repLeft "-316"; repStart "-6046"; ### ERVLB4_15q11.2s ### chr15 rmsk gene 24595849 24598467 . - . gene_id "ERVLB4_15q11.2s"; transcript_id "ERVLB4_15q11.2s"; locus "ERVLB4_15q11.2s"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1491"; model_cov "2322"; model_pct "40.6"; chr15 rmsk exon 24595849 24598105 9413 - . gene_id "ERVLB4_15q11.2s"; transcript_id "ERVLB4_15q11.2s"; locus "ERVLB4_15q11.2s"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1491"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "10"; repStart "-3382"; chr15 rmsk exon 24598127 24598467 1626 - . gene_id "ERVLB4_15q11.2s"; transcript_id "ERVLB4_15q11.2s"; locus "ERVLB4_15q11.2s"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1491"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "180"; repStart "-7"; ### ERVLB4_15q11.2t ### chr15 rmsk gene 24630985 24633910 . - . gene_id "ERVLB4_15q11.2t"; transcript_id "ERVLB4_15q11.2t"; locus "ERVLB4_15q11.2t"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1492"; model_cov "2381"; model_pct "41.7"; chr15 rmsk exon 24630985 24632113 5354 - . gene_id "ERVLB4_15q11.2t"; transcript_id "ERVLB4_15q11.2t"; locus "ERVLB4_15q11.2t"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1492"; repClass "LTR"; repEnd "5088"; repFamily "ERVL"; repLeft "3945"; repStart "-626"; chr15 rmsk exon 24632153 24633007 3387 - . gene_id "ERVLB4_15q11.2t"; transcript_id "ERVLB4_15q11.2t"; locus "ERVLB4_15q11.2t"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1492"; repClass "LTR"; repEnd "1877"; repFamily "ERVL"; repLeft "1013"; repStart "-3837"; chr15 rmsk exon 24633537 24633910 1717 - . gene_id "ERVLB4_15q11.2t"; transcript_id "ERVLB4_15q11.2t"; locus "ERVLB4_15q11.2t"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1492"; repClass "LTR"; repEnd "1009"; repFamily "ERVL"; repLeft "635"; repStart "-4705"; ### HERVH_15q11.2 ### chr15 rmsk gene 24685360 24691027 . - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1047"; model_cov "5143"; model_pct "66.7"; chr15 rmsk exon 24685360 24685750 2283 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr15 rmsk exon 24685751 24686127 2225 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr15 rmsk exon 24686128 24686354 1119 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chr15 rmsk exon 24686356 24687509 7513 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "3994"; repStart "-2567"; chr15 rmsk exon 24687531 24687776 1434 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3492"; repStart "-3977"; chr15 rmsk exon 24687767 24687916 935 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr15 rmsk exon 24687911 24690624 13851 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr15 rmsk exon 24690627 24691027 2469 - . gene_id "HERVH_15q11.2"; transcript_id "HERVH_15q11.2"; locus "HERVH_15q11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1047"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL74_15q11.2e ### chr15 rmsk gene 24730447 24731921 . + . gene_id "HERVL74_15q11.2e"; transcript_id "HERVL74_15q11.2e"; locus "HERVL74_15q11.2e"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0097"; model_cov "1561"; model_pct "27.5"; chr15 rmsk exon 24730447 24731723 2288 + . gene_id "HERVL74_15q11.2e"; transcript_id "HERVL74_15q11.2e"; locus "HERVL74_15q11.2e"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0097"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "-2043"; repStart "2288"; chr15 rmsk exon 24731729 24731881 957 + . gene_id "HERVL74_15q11.2e"; transcript_id "HERVL74_15q11.2e"; locus "HERVL74_15q11.2e"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0097"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3920"; chr15 rmsk exon 24731864 24731921 311 + . gene_id "HERVL74_15q11.2e"; transcript_id "HERVL74_15q11.2e"; locus "HERVL74_15q11.2e"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0097"; repClass "LTR"; repEnd "4637"; repFamily "ERVL"; repLeft "-1048"; repStart "4583"; ### MER34B_15q11.2 ### chr15 rmsk gene 24893923 24894835 . - . gene_id "MER34B_15q11.2"; transcript_id "MER34B_15q11.2"; locus "MER34B_15q11.2"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0241"; model_cov "578"; model_pct "10.8"; chr15 rmsk exon 24893923 24894214 1720 - . gene_id "MER34B_15q11.2"; transcript_id "MER34B_15q11.2"; locus "MER34B_15q11.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0241"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "363"; repStart "-4736"; chr15 rmsk exon 24894519 24894835 1720 - . gene_id "MER34B_15q11.2"; transcript_id "MER34B_15q11.2"; locus "MER34B_15q11.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0241"; repClass "LTR"; repEnd "362"; repFamily "ERV1"; repLeft "41"; repStart "-4994"; ### ERVLE_15q11.2 ### chr15 rmsk gene 24899989 24901417 . + . gene_id "ERVLE_15q11.2"; transcript_id "ERVLE_15q11.2"; locus "ERVLE_15q11.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3103"; model_cov "925"; model_pct "16.3"; chr15 rmsk exon 24899989 24900350 538 + . gene_id "ERVLE_15q11.2"; transcript_id "ERVLE_15q11.2"; locus "ERVLE_15q11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3103"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-5207"; repStart "104"; chr15 rmsk exon 24900441 24900816 372 + . gene_id "ERVLE_15q11.2"; transcript_id "ERVLE_15q11.2"; locus "ERVLE_15q11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3103"; repClass "LTR"; repEnd "1029"; repFamily "ERVL"; repLeft "-4638"; repStart "649"; chr15 rmsk exon 24901226 24901417 577 + . gene_id "ERVLE_15q11.2"; transcript_id "ERVLE_15q11.2"; locus "ERVLE_15q11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3103"; repClass "LTR"; repEnd "1630"; repFamily "ERVL"; repLeft "-4037"; repStart "1441"; ### ERVLB4_15q11.2u ### chr15 rmsk gene 24940805 24945110 . - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1495"; model_cov "2724"; model_pct "47.7"; chr15 rmsk exon 24940805 24940972 867 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "197"; repStart "-54"; chr15 rmsk exon 24941278 24941758 12946 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "5416"; repFamily "ERVL"; repLeft "4931"; repStart "-298"; chr15 rmsk exon 24942078 24943810 12946 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "3147"; repStart "-784"; chr15 rmsk exon 24944121 24944246 6549 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "3146"; repFamily "ERVL"; repLeft "3032"; repStart "-2568"; chr15 rmsk exon 24944235 24944424 858 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "198"; repStart "-5319"; chr15 rmsk exon 24944559 24944700 545 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "1"; repStart "-5568"; chr15 rmsk exon 24944708 24945110 1740 - . gene_id "ERVLB4_15q11.2u"; transcript_id "ERVLB4_15q11.2u"; locus "ERVLB4_15q11.2u"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1495"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "1"; repStart "-7"; ### ERVLB4_15q11.2v ### chr15 rmsk gene 25450818 25451562 . + . gene_id "ERVLB4_15q11.2v"; transcript_id "ERVLB4_15q11.2v"; locus "ERVLB4_15q11.2v"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1496"; model_cov "787"; model_pct "13.8"; chr15 rmsk exon 25450818 25451562 1932 + . gene_id "ERVLB4_15q11.2v"; transcript_id "ERVLB4_15q11.2v"; locus "ERVLB4_15q11.2v"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1496"; repClass "LTR"; repEnd "2458"; repFamily "ERVL"; repLeft "-3256"; repStart "1671"; ### ERVLB4_15q12 ### chr15 rmsk gene 25572234 25574436 . - . gene_id "ERVLB4_15q12"; transcript_id "ERVLB4_15q12"; locus "ERVLB4_15q12"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1497"; model_cov "1490"; model_pct "26.1"; chr15 rmsk exon 25572234 25572636 1999 - . gene_id "ERVLB4_15q12"; transcript_id "ERVLB4_15q12"; locus "ERVLB4_15q12"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1497"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "6"; repStart "-2"; chr15 rmsk exon 25572642 25572863 6013 - . gene_id "ERVLB4_15q12"; transcript_id "ERVLB4_15q12"; locus "ERVLB4_15q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1497"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5487"; repStart "0"; chr15 rmsk exon 25573210 25574023 6013 - . gene_id "ERVLB4_15q12"; transcript_id "ERVLB4_15q12"; locus "ERVLB4_15q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1497"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "4631"; repStart "-228"; chr15 rmsk exon 25574022 25574436 2724 - . gene_id "ERVLB4_15q12"; transcript_id "ERVLB4_15q12"; locus "ERVLB4_15q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1497"; repClass "LTR"; repEnd "4476"; repFamily "ERVL"; repLeft "4068"; repStart "-1238"; ### HML3_15q12 ### chr15 rmsk gene 25636096 25640795 . + . gene_id "HML3_15q12"; transcript_id "HML3_15q12"; locus "HML3_15q12"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0192"; model_cov "4202"; model_pct "69.8"; chr15 rmsk exon 25636096 25636572 3715 + . gene_id "HML3_15q12"; transcript_id "HML3_15q12"; locus "HML3_15q12"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0192"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr15 rmsk exon 25636576 25637468 3568 + . gene_id "HML3_15q12"; transcript_id "HML3_15q12"; locus "HML3_15q12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0192"; repClass "LTR"; repEnd "798"; repFamily "ERVK"; repLeft "-5223"; repStart "-69"; chr15 rmsk exon 25637469 25640795 25777 + . gene_id "HML3_15q12"; transcript_id "HML3_15q12"; locus "HML3_15q12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0192"; repClass "LTR"; repEnd "4972"; repFamily "ERVK"; repLeft "-1049"; repStart "1637"; ### MER101_15q12 ### chr15 rmsk gene 25756672 25757581 . + . gene_id "MER101_15q12"; transcript_id "MER101_15q12"; locus "MER101_15q12"; category "internal"; intModel "MER101-int"; locid "MER101-int_0333"; model_cov "923"; model_pct "13.9"; chr15 rmsk exon 25756672 25757581 1565 + . gene_id "MER101_15q12"; transcript_id "MER101_15q12"; locus "MER101_15q12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0333"; repClass "LTR"; repEnd "2386"; repFamily "ERV1"; repLeft "-4253"; repStart "1463"; ### ERVLE_15q12a ### chr15 rmsk gene 26076994 26079814 . + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3105"; model_cov "2123"; model_pct "37.5"; chr15 rmsk exon 26076994 26077140 2379 + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3105"; repClass "LTR"; repEnd "173"; repFamily "ERVL"; repLeft "-5494"; repStart "24"; chr15 rmsk exon 26077428 26077952 2379 + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3105"; repClass "LTR"; repEnd "692"; repFamily "ERVL"; repLeft "-4975"; repStart "174"; chr15 rmsk exon 26078119 26078941 2379 + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3105"; repClass "LTR"; repEnd "1566"; repFamily "ERVL"; repLeft "-4101"; repStart "693"; chr15 rmsk exon 26079094 26079327 2379 + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3105"; repClass "LTR"; repEnd "1825"; repFamily "ERVL"; repLeft "-3842"; repStart "1567"; chr15 rmsk exon 26079451 26079814 1021 + . gene_id "ERVLE_15q12a"; transcript_id "ERVLE_15q12a"; locus "ERVLE_15q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3105"; repClass "LTR"; repEnd "2347"; repFamily "ERVL"; repLeft "-3320"; repStart "2022"; ### HERVL40_15q12 ### chr15 rmsk gene 26138557 26139654 . + . gene_id "HERVL40_15q12"; transcript_id "HERVL40_15q12"; locus "HERVL40_15q12"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0381"; model_cov "1161"; model_pct "21.0"; chr15 rmsk exon 26138557 26138944 911 + . gene_id "HERVL40_15q12"; transcript_id "HERVL40_15q12"; locus "HERVL40_15q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0381"; repClass "LTR"; repEnd "4163"; repFamily "ERVL"; repLeft "-1367"; repStart "3756"; chr15 rmsk exon 26138943 26139307 494 + . gene_id "HERVL40_15q12"; transcript_id "HERVL40_15q12"; locus "HERVL40_15q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0381"; repClass "LTR"; repEnd "4870"; repFamily "ERVL"; repLeft "-660"; repStart "4461"; chr15 rmsk exon 26139325 26139654 1202 + . gene_id "HERVL40_15q12"; transcript_id "HERVL40_15q12"; locus "HERVL40_15q12"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0381"; repClass "LTR"; repEnd "5259"; repFamily "ERVL"; repLeft "-271"; repStart "4914"; ### HERVL_15q12 ### chr15 rmsk gene 26402079 26403119 . + . gene_id "HERVL_15q12"; transcript_id "HERVL_15q12"; locus "HERVL_15q12"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1119"; model_cov "795"; model_pct "14.1"; chr15 rmsk exon 26402079 26402263 270 + . gene_id "HERVL_15q12"; transcript_id "HERVL_15q12"; locus "HERVL_15q12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1119"; repClass "LTR"; repEnd "2580"; repFamily "ERVL"; repLeft "-3074"; repStart "2388"; chr15 rmsk exon 26402541 26403119 963 + . gene_id "HERVL_15q12"; transcript_id "HERVL_15q12"; locus "HERVL_15q12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1119"; repClass "LTR"; repEnd "2870"; repFamily "ERVL"; repLeft "-2784"; repStart "2267"; ### HERVIP10F_15q12 ### chr15 rmsk gene 27264196 27265475 . + . gene_id "HERVIP10F_15q12"; transcript_id "HERVIP10F_15q12"; locus "HERVIP10F_15q12"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0097"; model_cov "989"; model_pct "12.8"; chr15 rmsk exon 27264196 27264969 1624 + . gene_id "HERVIP10F_15q12"; transcript_id "HERVIP10F_15q12"; locus "HERVIP10F_15q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0097"; repClass "LTR"; repEnd "5904"; repFamily "ERV1"; repLeft "-1833"; repStart "5122"; chr15 rmsk exon 27265086 27265295 555 + . gene_id "HERVIP10F_15q12"; transcript_id "HERVIP10F_15q12"; locus "HERVIP10F_15q12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0097"; repClass "LTR"; repEnd "6276"; repFamily "ERV1"; repLeft "-1461"; repStart "6069"; chr15 rmsk exon 27265303 27265475 439 + . gene_id "HERVIP10F_15q12"; transcript_id "HERVIP10F_15q12"; locus "HERVIP10F_15q12"; repName "LTR10B"; geneRegion "ltr"; locid "HERVIP10F-int_0097"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "0"; repStart "332"; ### ERVLE_15q12b ### chr15 rmsk gene 27750698 27752090 . + . gene_id "ERVLE_15q12b"; transcript_id "ERVLE_15q12b"; locus "ERVLE_15q12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3107"; model_cov "1128"; model_pct "19.9"; chr15 rmsk exon 27750698 27750776 328 + . gene_id "ERVLE_15q12b"; transcript_id "ERVLE_15q12b"; locus "ERVLE_15q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3107"; repClass "LTR"; repEnd "1546"; repFamily "ERVL"; repLeft "-4121"; repStart "1466"; chr15 rmsk exon 27750930 27751348 801 + . gene_id "ERVLE_15q12b"; transcript_id "ERVLE_15q12b"; locus "ERVLE_15q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3107"; repClass "LTR"; repEnd "2116"; repFamily "ERVL"; repLeft "-3551"; repStart "1683"; chr15 rmsk exon 27751480 27752090 1606 + . gene_id "ERVLE_15q12b"; transcript_id "ERVLE_15q12b"; locus "ERVLE_15q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3107"; repClass "LTR"; repEnd "3497"; repFamily "ERVL"; repLeft "-2170"; repStart "2882"; ### ERVLE_15q13.1a ### chr15 rmsk gene 27899605 27900948 . + . gene_id "ERVLE_15q13.1a"; transcript_id "ERVLE_15q13.1a"; locus "ERVLE_15q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3109"; model_cov "793"; model_pct "14.0"; chr15 rmsk exon 27899605 27900024 941 + . gene_id "ERVLE_15q13.1a"; transcript_id "ERVLE_15q13.1a"; locus "ERVLE_15q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3109"; repClass "LTR"; repEnd "4848"; repFamily "ERVL"; repLeft "-819"; repStart "4411"; chr15 rmsk exon 27900604 27900948 941 + . gene_id "ERVLE_15q13.1a"; transcript_id "ERVLE_15q13.1a"; locus "ERVLE_15q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3109"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-462"; repStart "4849"; ### ERVLE_15q13.1b ### chr15 rmsk gene 28869041 28870697 . - . gene_id "ERVLE_15q13.1b"; transcript_id "ERVLE_15q13.1b"; locus "ERVLE_15q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3110"; model_cov "1058"; model_pct "18.7"; chr15 rmsk exon 28869041 28869391 1884 - . gene_id "ERVLE_15q13.1b"; transcript_id "ERVLE_15q13.1b"; locus "ERVLE_15q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3110"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "2111"; repStart "-3212"; chr15 rmsk exon 28869688 28869905 1884 - . gene_id "ERVLE_15q13.1b"; transcript_id "ERVLE_15q13.1b"; locus "ERVLE_15q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3110"; repClass "LTR"; repEnd "2110"; repFamily "ERVL"; repLeft "1909"; repStart "-3557"; chr15 rmsk exon 28870199 28870445 1884 - . gene_id "ERVLE_15q13.1b"; transcript_id "ERVLE_15q13.1b"; locus "ERVLE_15q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3110"; repClass "LTR"; repEnd "1908"; repFamily "ERVL"; repLeft "1683"; repStart "-3759"; chr15 rmsk exon 28870477 28870697 450 - . gene_id "ERVLE_15q13.1b"; transcript_id "ERVLE_15q13.1b"; locus "ERVLE_15q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3110"; repClass "LTR"; repEnd "1550"; repFamily "ERVL"; repLeft "1262"; repStart "-4117"; ### ERV316A3_15q13.1 ### chr15 rmsk gene 28871926 28873883 . - . gene_id "ERV316A3_15q13.1"; transcript_id "ERV316A3_15q13.1"; locus "ERV316A3_15q13.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2348"; model_cov "907"; model_pct "17.4"; chr15 rmsk exon 28871926 28872212 1902 - . gene_id "ERV316A3_15q13.1"; transcript_id "ERV316A3_15q13.1"; locus "ERV316A3_15q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2348"; repClass "LTR"; repEnd "4411"; repFamily "ERVL"; repLeft "4087"; repStart "-815"; chr15 rmsk exon 28872574 28873121 1902 - . gene_id "ERV316A3_15q13.1"; transcript_id "ERV316A3_15q13.1"; locus "ERV316A3_15q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2348"; repClass "LTR"; repEnd "4086"; repFamily "ERVL"; repLeft "3503"; repStart "-1140"; chr15 rmsk exon 28873541 28873883 508 - . gene_id "ERV316A3_15q13.1"; transcript_id "ERV316A3_15q13.1"; locus "ERV316A3_15q13.1"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2348"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "72"; repStart "-8"; ### ERVLB4_15q13.2a ### chr15 rmsk gene 30309499 30313653 . + . gene_id "ERVLB4_15q13.2a"; transcript_id "ERVLB4_15q13.2a"; locus "ERVLB4_15q13.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1500"; model_cov "4345"; model_pct "76.0"; chr15 rmsk exon 30309499 30313653 21784 + . gene_id "ERVLB4_15q13.2a"; transcript_id "ERVLB4_15q13.2a"; locus "ERVLB4_15q13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1500"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "-798"; repStart "571"; ### ERVLE_15q13.2 ### chr15 rmsk gene 30319392 30322684 . - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3112"; model_cov "1563"; model_pct "27.6"; chr15 rmsk exon 30319392 30319500 431 - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3112"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "5067"; repStart "-493"; chr15 rmsk exon 30320904 30321432 1454 - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3112"; repClass "LTR"; repEnd "4000"; repFamily "ERVL"; repLeft "3434"; repStart "-1667"; chr15 rmsk exon 30321456 30321673 459 - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3112"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "3137"; repStart "-2293"; chr15 rmsk exon 30322046 30322454 982 - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3112"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "2578"; repStart "-2661"; chr15 rmsk exon 30322463 30322684 306 - . gene_id "ERVLE_15q13.2"; transcript_id "ERVLE_15q13.2"; locus "ERVLE_15q13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3112"; repClass "LTR"; repEnd "1110"; repFamily "ERVL"; repLeft "885"; repStart "-4557"; ### ERVL_15q13.2 ### chr15 rmsk gene 30498467 30499838 . + . gene_id "ERVL_15q13.2"; transcript_id "ERVL_15q13.2"; locus "ERVL_15q13.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0383"; model_cov "898"; model_pct "15.6"; chr15 rmsk exon 30498467 30498529 304 + . gene_id "ERVL_15q13.2"; transcript_id "ERVL_15q13.2"; locus "ERVL_15q13.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0383"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "453"; chr15 rmsk exon 30498530 30499090 2346 + . gene_id "ERVL_15q13.2"; transcript_id "ERVL_15q13.2"; locus "ERVL_15q13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0383"; repClass "LTR"; repEnd "676"; repFamily "ERVL"; repLeft "-5081"; repStart "1"; chr15 rmsk exon 30499595 30499838 2346 + . gene_id "ERVL_15q13.2"; transcript_id "ERVL_15q13.2"; locus "ERVL_15q13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0383"; repClass "LTR"; repEnd "900"; repFamily "ERVL"; repLeft "-4857"; repStart "677"; ### HERVL74_15q13.2a ### chr15 rmsk gene 30854792 30855541 . + . gene_id "HERVL74_15q13.2a"; transcript_id "HERVL74_15q13.2a"; locus "HERVL74_15q13.2a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0098"; model_cov "740"; model_pct "13.0"; chr15 rmsk exon 30854792 30855191 1397 + . gene_id "HERVL74_15q13.2a"; transcript_id "HERVL74_15q13.2a"; locus "HERVL74_15q13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0098"; repClass "LTR"; repEnd "3346"; repFamily "ERVL"; repLeft "-2339"; repStart "2931"; chr15 rmsk exon 30855221 30855541 1586 + . gene_id "HERVL74_15q13.2a"; transcript_id "HERVL74_15q13.2a"; locus "HERVL74_15q13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0098"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "-1964"; repStart "3396"; ### HERVL74_15q13.2b ### chr15 rmsk gene 30855947 30860654 . + . gene_id "HERVL74_15q13.2b"; transcript_id "HERVL74_15q13.2b"; locus "HERVL74_15q13.2b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0099"; model_cov "1748"; model_pct "30.7"; chr15 rmsk exon 30855947 30856181 1168 + . gene_id "HERVL74_15q13.2b"; transcript_id "HERVL74_15q13.2b"; locus "HERVL74_15q13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0099"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3657"; repStart "1788"; chr15 rmsk exon 30858318 30858597 1002 + . gene_id "HERVL74_15q13.2b"; transcript_id "HERVL74_15q13.2b"; locus "HERVL74_15q13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0099"; repClass "LTR"; repEnd "3424"; repFamily "ERVL"; repLeft "-2261"; repStart "3130"; chr15 rmsk exon 30858609 30858817 808 + . gene_id "HERVL74_15q13.2b"; transcript_id "HERVL74_15q13.2b"; locus "HERVL74_15q13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0099"; repClass "LTR"; repEnd "3749"; repFamily "ERVL"; repLeft "-1936"; repStart "3536"; chr15 rmsk exon 30859604 30860654 4076 + . gene_id "HERVL74_15q13.2b"; transcript_id "HERVL74_15q13.2b"; locus "HERVL74_15q13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0099"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "-809"; repStart "3875"; ### ERVLB4_15q13.2b ### chr15 rmsk gene 30864706 30867381 . - . gene_id "ERVLB4_15q13.2b"; transcript_id "ERVLB4_15q13.2b"; locus "ERVLB4_15q13.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1502"; model_cov "2092"; model_pct "36.6"; chr15 rmsk exon 30864706 30865308 1790 - . gene_id "ERVLB4_15q13.2b"; transcript_id "ERVLB4_15q13.2b"; locus "ERVLB4_15q13.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1502"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr15 rmsk exon 30865309 30867381 11559 - . gene_id "ERVLB4_15q13.2b"; transcript_id "ERVLB4_15q13.2b"; locus "ERVLB4_15q13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1502"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3622"; repStart "0"; ### ERVLB4_15q13.2c ### chr15 rmsk gene 30867400 30872949 . + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1503"; model_cov "3529"; model_pct "61.8"; chr15 rmsk exon 30867400 30867550 3013 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "1882"; repFamily "ERVL"; repLeft "-3832"; repStart "1732"; chr15 rmsk exon 30867862 30868308 3013 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "-3386"; repStart "1883"; chr15 rmsk exon 30869425 30871437 10230 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "4406"; repFamily "ERVL"; repLeft "-1308"; repStart "2322"; chr15 rmsk exon 30871426 30871936 2236 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "5399"; repFamily "ERVL"; repLeft "-315"; repStart "4871"; chr15 rmsk exon 30872020 30872326 1598 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5392"; chr15 rmsk exon 30872330 30872479 735 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "-254"; repStart "5"; chr15 rmsk exon 30872873 30872949 484 + . gene_id "ERVLB4_15q13.2c"; transcript_id "ERVLB4_15q13.2c"; locus "ERVLB4_15q13.2c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1503"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "-183"; repStart "148"; ### LTR23_15q13.3a ### chr15 rmsk gene 31138733 31140031 . + . gene_id "LTR23_15q13.3a"; transcript_id "LTR23_15q13.3a"; locus "LTR23_15q13.3a"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0059"; model_cov "1470"; model_pct "28.7"; chr15 rmsk exon 31138733 31139022 770 + . gene_id "LTR23_15q13.3a"; transcript_id "LTR23_15q13.3a"; locus "LTR23_15q13.3a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0059"; repClass "LTR"; repEnd "1188"; repFamily "ERV1"; repLeft "-3935"; repStart "918"; chr15 rmsk exon 31139233 31139276 256 + . gene_id "LTR23_15q13.3a"; transcript_id "LTR23_15q13.3a"; locus "LTR23_15q13.3a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0059"; repClass "LTR"; repEnd "1235"; repFamily "ERV1"; repLeft "-3888"; repStart "1193"; chr15 rmsk exon 31139369 31140031 1738 + . gene_id "LTR23_15q13.3a"; transcript_id "LTR23_15q13.3a"; locus "LTR23_15q13.3a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0059"; repClass "LTR"; repEnd "1950"; repFamily "ERV1"; repLeft "-3173"; repStart "792"; ### LTR23_15q13.3b ### chr15 rmsk gene 31141132 31141804 . + . gene_id "LTR23_15q13.3b"; transcript_id "LTR23_15q13.3b"; locus "LTR23_15q13.3b"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0060"; model_cov "815"; model_pct "15.9"; chr15 rmsk exon 31141132 31141804 1261 + . gene_id "LTR23_15q13.3b"; transcript_id "LTR23_15q13.3b"; locus "LTR23_15q13.3b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0060"; repClass "LTR"; repEnd "1470"; repFamily "ERV1"; repLeft "-3653"; repStart "655"; ### ERV316A3_15q13.3a ### chr15 rmsk gene 31241107 31242587 . - . gene_id "ERV316A3_15q13.3a"; transcript_id "ERV316A3_15q13.3a"; locus "ERV316A3_15q13.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2349"; model_cov "1509"; model_pct "28.9"; chr15 rmsk exon 31241107 31241225 414 - . gene_id "ERV316A3_15q13.3a"; transcript_id "ERV316A3_15q13.3a"; locus "ERV316A3_15q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2349"; repClass "LTR"; repEnd "3935"; repFamily "ERVL"; repLeft "3806"; repStart "-1291"; chr15 rmsk exon 31241222 31241673 1098 - . gene_id "ERV316A3_15q13.3a"; transcript_id "ERV316A3_15q13.3a"; locus "ERV316A3_15q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2349"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "2964"; repStart "-1750"; chr15 rmsk exon 31241672 31242587 2056 - . gene_id "ERV316A3_15q13.3a"; transcript_id "ERV316A3_15q13.3a"; locus "ERV316A3_15q13.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2349"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2114"; repStart "-2244"; ### ERV316A3_15q13.3b ### chr15 rmsk gene 31276139 31278355 . - . gene_id "ERV316A3_15q13.3b"; transcript_id "ERV316A3_15q13.3b"; locus "ERV316A3_15q13.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2350"; model_cov "1947"; model_pct "37.3"; chr15 rmsk exon 31276139 31277693 2168 - . gene_id "ERV316A3_15q13.3b"; transcript_id "ERV316A3_15q13.3b"; locus "ERV316A3_15q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2350"; repClass "LTR"; repEnd "2426"; repFamily "ERVL"; repLeft "813"; repStart "-2800"; chr15 rmsk exon 31278014 31278355 738 - . gene_id "ERV316A3_15q13.3b"; transcript_id "ERV316A3_15q13.3b"; locus "ERV316A3_15q13.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2350"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "499"; repStart "-4393"; ### ERVLB4_15q13.3a ### chr15 rmsk gene 31448070 31450841 . - . gene_id "ERVLB4_15q13.3a"; transcript_id "ERVLB4_15q13.3a"; locus "ERVLB4_15q13.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1505"; model_cov "1931"; model_pct "33.8"; chr15 rmsk exon 31448070 31448155 385 - . gene_id "ERVLB4_15q13.3a"; transcript_id "ERVLB4_15q13.3a"; locus "ERVLB4_15q13.3a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1505"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "1"; repStart "-378"; chr15 rmsk exon 31448156 31449797 9360 - . gene_id "ERVLB4_15q13.3a"; transcript_id "ERVLB4_15q13.3a"; locus "ERVLB4_15q13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1505"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "4037"; repStart "-1"; chr15 rmsk exon 31450102 31450382 9360 - . gene_id "ERVLB4_15q13.3a"; transcript_id "ERVLB4_15q13.3a"; locus "ERVLB4_15q13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1505"; repClass "LTR"; repEnd "4036"; repFamily "ERVL"; repLeft "3781"; repStart "-1678"; chr15 rmsk exon 31450497 31450841 1505 - . gene_id "ERVLB4_15q13.3a"; transcript_id "ERVLB4_15q13.3a"; locus "ERVLB4_15q13.3a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1505"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "21"; repStart "-36"; ### ERVLE_15q13.3a ### chr15 rmsk gene 31467539 31472856 . + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3113"; model_cov "3421"; model_pct "60.4"; chr15 rmsk exon 31467539 31468126 1864 + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3113"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3261"; repStart "1771"; chr15 rmsk exon 31468425 31468704 1864 + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3113"; repClass "LTR"; repEnd "2719"; repFamily "ERVL"; repLeft "-2948"; repStart "2407"; chr15 rmsk exon 31469753 31470005 1864 + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3113"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2330"; repStart "3053"; chr15 rmsk exon 31470010 31470663 1055 + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3113"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3076"; chr15 rmsk exon 31471405 31472856 3238 + . gene_id "ERVLE_15q13.3a"; transcript_id "ERVLE_15q13.3a"; locus "ERVLE_15q13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3113"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-406"; repStart "3762"; ### HERVIP10FH_15q13.3 ### chr15 rmsk gene 31504974 31512979 . - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0145"; model_cov "3741"; model_pct "73.3"; chr15 rmsk exon 31504974 31505543 3670 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 31505567 31505748 3496 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "5042"; repFamily "ERV1"; repLeft "4855"; repStart "-60"; chr15 rmsk exon 31506038 31507443 3496 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "4854"; repFamily "ERV1"; repLeft "3417"; repStart "-248"; chr15 rmsk exon 31507903 31508351 3496 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "3416"; repFamily "ERV1"; repLeft "2973"; repStart "-1686"; chr15 rmsk exon 31508651 31509285 3496 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "2972"; repFamily "ERV1"; repLeft "2298"; repStart "-2130"; chr15 rmsk exon 31509578 31509858 3496 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "2018"; repStart "-2805"; chr15 rmsk exon 31510343 31510476 545 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "788"; repFamily "ERV1"; repLeft "664"; repStart "-4314"; chr15 rmsk exon 31511785 31512387 2648 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "599"; repFamily "ERV1"; repLeft "2"; repStart "-4503"; chr15 rmsk exon 31512390 31512979 4101 - . gene_id "HERVIP10FH_15q13.3"; transcript_id "HERVIP10FH_15q13.3"; locus "HERVIP10FH_15q13.3"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0145"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_15q13.3b ### chr15 rmsk gene 31584143 31585192 . + . gene_id "ERVLE_15q13.3b"; transcript_id "ERVLE_15q13.3b"; locus "ERVLE_15q13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3114"; model_cov "735"; model_pct "13.0"; chr15 rmsk exon 31584143 31584563 467 + . gene_id "ERVLE_15q13.3b"; transcript_id "ERVLE_15q13.3b"; locus "ERVLE_15q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3114"; repClass "LTR"; repEnd "757"; repFamily "ERVL"; repLeft "-4910"; repStart "332"; chr15 rmsk exon 31584886 31585192 463 + . gene_id "ERVLE_15q13.3b"; transcript_id "ERVLE_15q13.3b"; locus "ERVLE_15q13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3114"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5356"; ### ERVL_15q13.3 ### chr15 rmsk gene 31934702 31937815 . + . gene_id "ERVL_15q13.3"; transcript_id "ERVL_15q13.3"; locus "ERVL_15q13.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0385"; model_cov "3113"; model_pct "54.1"; chr15 rmsk exon 31934702 31934770 406 + . gene_id "ERVL_15q13.3"; transcript_id "ERVL_15q13.3"; locus "ERVL_15q13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0385"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "-5128"; repStart "559"; chr15 rmsk exon 31934765 31937676 8824 + . gene_id "ERVL_15q13.3"; transcript_id "ERVL_15q13.3"; locus "ERVL_15q13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0385"; repClass "LTR"; repEnd "4243"; repFamily "ERVL"; repLeft "-1514"; repStart "1338"; chr15 rmsk exon 31937678 31937815 820 + . gene_id "ERVL_15q13.3"; transcript_id "ERVL_15q13.3"; locus "ERVL_15q13.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0385"; repClass "LTR"; repEnd "4500"; repFamily "ERVL"; repLeft "-1257"; repStart "4362"; ### ERVLE_15q13.3c ### chr15 rmsk gene 32208103 32211163 . + . gene_id "ERVLE_15q13.3c"; transcript_id "ERVLE_15q13.3c"; locus "ERVLE_15q13.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3116"; model_cov "1351"; model_pct "23.8"; chr15 rmsk exon 32208103 32208511 1111 + . gene_id "ERVLE_15q13.3c"; transcript_id "ERVLE_15q13.3c"; locus "ERVLE_15q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3116"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "-2661"; repStart "2578"; chr15 rmsk exon 32208876 32209645 1661 + . gene_id "ERVLE_15q13.3c"; transcript_id "ERVLE_15q13.3c"; locus "ERVLE_15q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3116"; repClass "LTR"; repEnd "4000"; repFamily "ERVL"; repLeft "-1667"; repStart "3184"; chr15 rmsk exon 32211055 32211163 472 + . gene_id "ERVLE_15q13.3c"; transcript_id "ERVLE_15q13.3c"; locus "ERVLE_15q13.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3116"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-493"; repStart "5067"; ### ERVLB4_15q13.3b ### chr15 rmsk gene 32223303 32229185 . - . gene_id "ERVLB4_15q13.3b"; transcript_id "ERVLB4_15q13.3b"; locus "ERVLB4_15q13.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1506"; model_cov "5137"; model_pct "89.9"; chr15 rmsk exon 32223303 32223631 1198 - . gene_id "ERVLB4_15q13.3b"; transcript_id "ERVLB4_15q13.3b"; locus "ERVLB4_15q13.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1506"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "143"; repStart "-64"; chr15 rmsk exon 32223634 32223860 27517 - . gene_id "ERVLB4_15q13.3b"; transcript_id "ERVLB4_15q13.3b"; locus "ERVLB4_15q13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1506"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "5464"; repStart "-4"; chr15 rmsk exon 32224159 32224276 27517 - . gene_id "ERVLB4_15q13.3b"; transcript_id "ERVLB4_15q13.3b"; locus "ERVLB4_15q13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1506"; repClass "LTR"; repEnd "5463"; repFamily "ERVL"; repLeft "5356"; repStart "-251"; chr15 rmsk exon 32224588 32229185 27517 - . gene_id "ERVLB4_15q13.3b"; transcript_id "ERVLB4_15q13.3b"; locus "ERVLB4_15q13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1506"; repClass "LTR"; repEnd "5355"; repFamily "ERVL"; repLeft "571"; repStart "-359"; ### ERVLB4_15q13.3c ### chr15 rmsk gene 32506258 32509243 . - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1507"; model_cov "1356"; model_pct "23.7"; chr15 rmsk exon 32506258 32506601 4383 - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1507"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "1009"; repStart "-4354"; chr15 rmsk exon 32507212 32507347 4383 - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1507"; repClass "LTR"; repEnd "1008"; repFamily "ERVL"; repLeft "850"; repStart "-4706"; chr15 rmsk exon 32507872 32508115 4383 - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1507"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "659"; repStart "-4865"; chr15 rmsk exon 32508620 32509180 4383 - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1507"; repClass "LTR"; repEnd "718"; repFamily "ERVL"; repLeft "61"; repStart "-4996"; chr15 rmsk exon 32509181 32509243 304 - . gene_id "ERVLB4_15q13.3c"; transcript_id "ERVLB4_15q13.3c"; locus "ERVLB4_15q13.3c"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1507"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "453"; repStart "0"; ### MER41_15q13.3 ### chr15 rmsk gene 33043600 33049583 . + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0457"; model_cov "4423"; model_pct "74.4"; chr15 rmsk exon 33043600 33043661 2877 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "-1516"; repFamily "ERV1"; repLeft "-7462"; repStart "-1590"; chr15 rmsk exon 33045458 33045896 2877 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "-1085"; repFamily "ERV1"; repLeft "-7031"; repStart "-1515"; chr15 rmsk exon 33046189 33047493 3919 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "1038"; repFamily "ERV1"; repLeft "-4908"; repStart "-1097"; chr15 rmsk exon 33047486 33047684 1178 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "1382"; repFamily "ERV1"; repLeft "-4564"; repStart "1186"; chr15 rmsk exon 33047685 33048576 3650 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "3160"; repFamily "ERV1"; repLeft "-2786"; repStart "2216"; chr15 rmsk exon 33048938 33049125 2540 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "3346"; repFamily "ERV1"; repLeft "-2600"; repStart "3161"; chr15 rmsk exon 33049153 33049583 2631 + . gene_id "MER41_15q13.3"; transcript_id "MER41_15q13.3"; locus "MER41_15q13.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0457"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5487"; ### MER4_15q14 ### chr15 rmsk gene 33592784 33599722 . - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0692"; model_cov "4834"; model_pct "73.3"; chr15 rmsk exon 33592784 33593250 3181 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0692"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 33593260 33595872 14765 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "3924"; repStart "0"; chr15 rmsk exon 33595891 33596417 2484 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "3296"; repFamily "ERV1"; repLeft "2737"; repStart "-3302"; chr15 rmsk exon 33597054 33597334 3613 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2224"; repStart "-4103"; chr15 rmsk exon 33597633 33598126 3613 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "2223"; repFamily "ERV1"; repLeft "1771"; repStart "-4375"; chr15 rmsk exon 33598125 33598441 1160 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "1005"; repStart "-5314"; chr15 rmsk exon 33598429 33598771 2792 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "227"; repStart "-5997"; chr15 rmsk exon 33599066 33599267 2792 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0692"; repClass "LTR"; repEnd "226"; repFamily "ERV1"; repLeft "1"; repStart "-6372"; chr15 rmsk exon 33599271 33599722 3125 - . gene_id "MER4_15q14"; transcript_id "MER4_15q14"; locus "MER4_15q14"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0692"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10F_15q14 ### chr15 rmsk gene 34154726 34161977 . - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0098"; model_cov "6222"; model_pct "80.4"; chr15 rmsk exon 34154726 34155010 1543 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "246"; repStart "-64"; chr15 rmsk exon 34155060 34155228 1543 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "245"; repFamily "ERV1"; repLeft "1"; repStart "-364"; chr15 rmsk exon 34155232 34159369 22131 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "3583"; repStart "-3"; chr15 rmsk exon 34159375 34160640 5142 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "2996"; repFamily "ERV1"; repLeft "1704"; repStart "-4741"; chr15 rmsk exon 34160634 34161443 2154 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "732"; repFamily "ERV1"; repLeft "-47"; repStart "-7005"; chr15 rmsk exon 34161460 34161977 2196 - . gene_id "HERVIP10F_15q14"; transcript_id "HERVIP10F_15q14"; locus "HERVIP10F_15q14"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0098"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "1"; repStart "-64"; ### MER41_15q14 ### chr15 rmsk gene 34377057 34378830 . + . gene_id "MER41_15q14"; transcript_id "MER41_15q14"; locus "MER41_15q14"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0458"; model_cov "717"; model_pct "12.1"; chr15 rmsk exon 34377057 34377681 4464 + . gene_id "MER41_15q14"; transcript_id "MER41_15q14"; locus "MER41_15q14"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0458"; repClass "LTR"; repEnd "632"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 34377686 34378404 4364 + . gene_id "MER41_15q14"; transcript_id "MER41_15q14"; locus "MER41_15q14"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0458"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "-5225"; repStart "4"; chr15 rmsk exon 34378409 34378496 437 + . gene_id "MER41_15q14"; transcript_id "MER41_15q14"; locus "MER41_15q14"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0458"; repClass "LTR"; repEnd "516"; repFamily "ERV1"; repLeft "-118"; repStart "427"; chr15 rmsk exon 34378797 34378830 437 + . gene_id "MER41_15q14"; transcript_id "MER41_15q14"; locus "MER41_15q14"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0458"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "517"; ### HERVH_15q14a ### chr15 rmsk gene 35238629 35243837 . + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1048"; model_cov "4295"; model_pct "55.7"; chr15 rmsk exon 35238629 35239062 2672 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 35239063 35242176 16621 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr15 rmsk exon 35242171 35242318 871 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr15 rmsk exon 35242309 35242456 870 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-4075"; repStart "3492"; chr15 rmsk exon 35242447 35242807 1121 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4744"; chr15 rmsk exon 35242809 35243025 1226 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 35243026 35243403 2496 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr15 rmsk exon 35243404 35243837 2688 + . gene_id "HERVH_15q14a"; transcript_id "HERVH_15q14a"; locus "HERVH_15q14a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1048"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3B_15q14 ### chr15 rmsk gene 35435748 35438253 . + . gene_id "HUERSP3B_15q14"; transcript_id "HUERSP3B_15q14"; locus "HUERSP3B_15q14"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0115"; model_cov "2562"; model_pct "34.5"; chr15 rmsk exon 35435748 35435927 566 + . gene_id "HUERSP3B_15q14"; transcript_id "HUERSP3B_15q14"; locus "HUERSP3B_15q14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0115"; repClass "LTR"; repEnd "2371"; repFamily "ERV1"; repLeft "-5047"; repStart "2203"; chr15 rmsk exon 35436098 35436184 311 + . gene_id "HUERSP3B_15q14"; transcript_id "HUERSP3B_15q14"; locus "HUERSP3B_15q14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0115"; repClass "LTR"; repEnd "2557"; repFamily "ERV1"; repLeft "-4861"; repStart "2473"; chr15 rmsk exon 35436592 35436712 430 + . gene_id "HUERSP3B_15q14"; transcript_id "HUERSP3B_15q14"; locus "HUERSP3B_15q14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0115"; repClass "LTR"; repEnd "2678"; repFamily "ERV1"; repLeft "-4740"; repStart "2548"; chr15 rmsk exon 35436741 35438253 2952 + . gene_id "HUERSP3B_15q14"; transcript_id "HUERSP3B_15q14"; locus "HUERSP3B_15q14"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0115"; repClass "LTR"; repEnd "2679"; repFamily "ERV1"; repLeft "-4739"; repStart "499"; ### MER61_15q14 ### chr15 rmsk gene 35438364 35440768 . + . gene_id "MER61_15q14"; transcript_id "MER61_15q14"; locus "MER61_15q14"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0328"; model_cov "3179"; model_pct "60.9"; chr15 rmsk exon 35438364 35439176 2582 + . gene_id "MER61_15q14"; transcript_id "MER61_15q14"; locus "MER61_15q14"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0328"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "-3580"; repStart "844"; chr15 rmsk exon 35439169 35440640 7353 + . gene_id "MER61_15q14"; transcript_id "MER61_15q14"; locus "MER61_15q14"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0328"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "2831"; chr15 rmsk exon 35440656 35440768 693 + . gene_id "MER61_15q14"; transcript_id "MER61_15q14"; locus "MER61_15q14"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0328"; repClass "LTR"; repEnd "196"; repFamily "ERV1"; repLeft "-232"; repStart "84"; ### ERV316A3_15q14a ### chr15 rmsk gene 35549680 35551193 . - . gene_id "ERV316A3_15q14a"; transcript_id "ERV316A3_15q14a"; locus "ERV316A3_15q14a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2352"; model_cov "939"; model_pct "18.0"; chr15 rmsk exon 35549680 35550059 1270 - . gene_id "ERV316A3_15q14a"; transcript_id "ERV316A3_15q14a"; locus "ERV316A3_15q14a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2352"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "64"; repStart "-2"; chr15 rmsk exon 35550109 35551006 2914 - . gene_id "ERV316A3_15q14a"; transcript_id "ERV316A3_15q14a"; locus "ERV316A3_15q14a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2352"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "4193"; repStart "-94"; chr15 rmsk exon 35551007 35551193 885 - . gene_id "ERV316A3_15q14a"; transcript_id "ERV316A3_15q14a"; locus "ERV316A3_15q14a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2352"; repClass "LTR"; repEnd "198"; repFamily "ERVL"; repLeft "3"; repStart "-282"; ### ERVLE_15q14a ### chr15 rmsk gene 36064698 36065653 . - . gene_id "ERVLE_15q14a"; transcript_id "ERVLE_15q14a"; locus "ERVLE_15q14a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3120"; model_cov "672"; model_pct "11.9"; chr15 rmsk exon 36064698 36064845 313 - . gene_id "ERVLE_15q14a"; transcript_id "ERVLE_15q14a"; locus "ERVLE_15q14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3120"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "5509"; repStart "-4"; chr15 rmsk exon 36065095 36065314 313 - . gene_id "ERVLE_15q14a"; transcript_id "ERVLE_15q14a"; locus "ERVLE_15q14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3120"; repClass "LTR"; repEnd "5508"; repFamily "ERVL"; repLeft "5290"; repStart "-159"; chr15 rmsk exon 36065358 36065653 885 - . gene_id "ERVLE_15q14a"; transcript_id "ERVLE_15q14a"; locus "ERVLE_15q14a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3120"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "4921"; repStart "-446"; ### ERVLE_15q14b ### chr15 rmsk gene 36239729 36244980 . + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3122"; model_cov "2230"; model_pct "39.4"; chr15 rmsk exon 36239729 36239818 304 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "1959"; repFamily "ERVL"; repLeft "-3708"; repStart "1851"; chr15 rmsk exon 36240448 36240616 374 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "2203"; repFamily "ERVL"; repLeft "-3464"; repStart "2030"; chr15 rmsk exon 36240738 36241449 888 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "3145"; repFamily "ERVL"; repLeft "-2522"; repStart "2422"; chr15 rmsk exon 36241483 36241960 737 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "3710"; repFamily "ERVL"; repLeft "-1957"; repStart "3220"; chr15 rmsk exon 36242260 36242516 323 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "4633"; repFamily "ERVL"; repLeft "-1034"; repStart "4385"; chr15 rmsk exon 36244500 36244980 1442 + . gene_id "ERVLE_15q14b"; transcript_id "ERVLE_15q14b"; locus "ERVLE_15q14b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3122"; repClass "LTR"; repEnd "4842"; repFamily "ERVL"; repLeft "-825"; repStart "4354"; ### HERVH_15q14b ### chr15 rmsk gene 36285828 36290875 . - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1049"; model_cov "4543"; model_pct "58.9"; chr15 rmsk exon 36285828 36286071 1896 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "243"; repFamily "ERV1"; repLeft "1"; repStart "-207"; chr15 rmsk exon 36286072 36286451 2605 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr15 rmsk exon 36286450 36286666 1388 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr15 rmsk exon 36286668 36287329 4330 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4489"; repStart "-2564"; chr15 rmsk exon 36287333 36287836 3421 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr15 rmsk exon 36287827 36287974 924 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr15 rmsk exon 36287954 36290875 16326 - . gene_id "HERVH_15q14b"; transcript_id "HERVH_15q14b"; locus "HERVH_15q14b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1049"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "373"; repStart "-4718"; ### ERV316A3_15q14b ### chr15 rmsk gene 37149557 37155905 . + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2354"; model_cov "4278"; model_pct "81.9"; chr15 rmsk exon 37149557 37149691 300 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "155"; repFamily "ERVL"; repLeft "-283"; repStart "1"; chr15 rmsk exon 37149739 37149944 708 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "225"; chr15 rmsk exon 37150057 37150157 283 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "-4761"; repStart "364"; chr15 rmsk exon 37150328 37150548 593 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "725"; repFamily "ERVL"; repLeft "-4501"; repStart "505"; chr15 rmsk exon 37150623 37153240 6604 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "3247"; repFamily "ERVL"; repLeft "-1979"; repStart "582"; chr15 rmsk exon 37153544 37153703 6604 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "3384"; repFamily "ERVL"; repLeft "-1842"; repStart "3248"; chr15 rmsk exon 37153735 37154350 2028 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "-1082"; repStart "3522"; chr15 rmsk exon 37154922 37154997 272 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "4279"; repFamily "ERVL"; repLeft "-947"; repStart "4204"; chr15 rmsk exon 37155008 37155374 423 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-757"; repStart "4010"; chr15 rmsk exon 37155449 37155905 1255 + . gene_id "ERV316A3_15q14b"; transcript_id "ERV316A3_15q14b"; locus "ERV316A3_15q14b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2354"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "-17"; ### HERVH_15q14c ### chr15 rmsk gene 37236265 37241355 . - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1050"; model_cov "4952"; model_pct "64.2"; chr15 rmsk exon 37236265 37236628 2335 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "-43"; chr15 rmsk exon 37236629 37237003 2466 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr15 rmsk exon 37237004 37237219 1428 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr15 rmsk exon 37237212 37237752 3860 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "5156"; repFamily "ERV1"; repLeft "4618"; repStart "-2557"; chr15 rmsk exon 37237751 37238549 5578 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "3952"; repFamily "ERV1"; repLeft "3140"; repStart "-3761"; chr15 rmsk exon 37238529 37241250 14761 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr15 rmsk exon 37241251 37241355 813 - . gene_id "HERVH_15q14c"; transcript_id "HERVH_15q14c"; locus "HERVH_15q14c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1050"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "344"; repStart "0"; ### ERVLE_15q14c ### chr15 rmsk gene 37687953 37690120 . + . gene_id "ERVLE_15q14c"; transcript_id "ERVLE_15q14c"; locus "ERVLE_15q14c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3123"; model_cov "1354"; model_pct "23.9"; chr15 rmsk exon 37687953 37688142 590 + . gene_id "ERVLE_15q14c"; transcript_id "ERVLE_15q14c"; locus "ERVLE_15q14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3123"; repClass "LTR"; repEnd "3846"; repFamily "ERVL"; repLeft "-1821"; repStart "3630"; chr15 rmsk exon 37689036 37690120 2119 + . gene_id "ERVLE_15q14c"; transcript_id "ERVLE_15q14c"; locus "ERVLE_15q14c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3123"; repClass "LTR"; repEnd "5571"; repFamily "ERVL"; repLeft "-96"; repStart "4433"; ### ERVLB4_15q14 ### chr15 rmsk gene 38641659 38643425 . - . gene_id "ERVLB4_15q14"; transcript_id "ERVLB4_15q14"; locus "ERVLB4_15q14"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1510"; model_cov "1082"; model_pct "18.9"; chr15 rmsk exon 38641659 38642001 1641 - . gene_id "ERVLB4_15q14"; transcript_id "ERVLB4_15q14"; locus "ERVLB4_15q14"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1510"; repClass "LTR"; repEnd "2090"; repFamily "ERVL"; repLeft "1733"; repStart "-3624"; chr15 rmsk exon 38642000 38642423 1199 - . gene_id "ERVLB4_15q14"; transcript_id "ERVLB4_15q14"; locus "ERVLB4_15q14"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1510"; repClass "LTR"; repEnd "985"; repFamily "ERVL"; repLeft "530"; repStart "-4729"; chr15 rmsk exon 38643029 38643294 1201 - . gene_id "ERVLB4_15q14"; transcript_id "ERVLB4_15q14"; locus "ERVLB4_15q14"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1510"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "320"; repStart "-5124"; chr15 rmsk exon 38643316 38643425 482 - . gene_id "ERVLB4_15q14"; transcript_id "ERVLB4_15q14"; locus "ERVLB4_15q14"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1510"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "564"; repStart "0"; ### ERVLE_15q14d ### chr15 rmsk gene 38789123 38790915 . + . gene_id "ERVLE_15q14d"; transcript_id "ERVLE_15q14d"; locus "ERVLE_15q14d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3125"; model_cov "1558"; model_pct "27.5"; chr15 rmsk exon 38789123 38789244 452 + . gene_id "ERVLE_15q14d"; transcript_id "ERVLE_15q14d"; locus "ERVLE_15q14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3125"; repClass "LTR"; repEnd "3419"; repFamily "ERVL"; repLeft "-2248"; repStart "3293"; chr15 rmsk exon 38789262 38789985 1902 + . gene_id "ERVLE_15q14d"; transcript_id "ERVLE_15q14d"; locus "ERVLE_15q14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3125"; repClass "LTR"; repEnd "4219"; repFamily "ERVL"; repLeft "-1448"; repStart "3450"; chr15 rmsk exon 38790278 38790915 1353 + . gene_id "ERVLE_15q14d"; transcript_id "ERVLE_15q14d"; locus "ERVLE_15q14d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3125"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "-383"; repStart "4621"; ### HML5_15q14 ### chr15 rmsk gene 39012800 39017150 . + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0102"; model_cov "2847"; model_pct "41.6"; chr15 rmsk exon 39012800 39013373 4045 + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0102"; repClass "LTR"; repEnd "759"; repFamily "ERVK"; repLeft "-6078"; repStart "186"; chr15 rmsk exon 39013656 39015215 13029 + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0102"; repClass "LTR"; repEnd "3878"; repFamily "ERVK"; repLeft "-2959"; repStart "2327"; chr15 rmsk exon 39015522 39015810 13029 + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0102"; repClass "LTR"; repEnd "4160"; repFamily "ERVK"; repLeft "-2677"; repStart "3879"; chr15 rmsk exon 39015882 39016673 2939 + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0102"; repClass "LTR"; repEnd "5096"; repFamily "ERVK"; repLeft "-1741"; repStart "4654"; chr15 rmsk exon 39016674 39017150 2114 + . gene_id "HML5_15q14"; transcript_id "HML5_15q14"; locus "HML5_15q14"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0102"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_15q14c ### chr15 rmsk gene 39129156 39131086 . + . gene_id "ERV316A3_15q14c"; transcript_id "ERV316A3_15q14c"; locus "ERV316A3_15q14c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2355"; model_cov "1443"; model_pct "27.6"; chr15 rmsk exon 39129156 39129309 537 + . gene_id "ERV316A3_15q14c"; transcript_id "ERV316A3_15q14c"; locus "ERV316A3_15q14c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2355"; repClass "LTR"; repEnd "4009"; repFamily "ERVL"; repLeft "-1217"; repStart "3852"; chr15 rmsk exon 39129576 39130619 2028 + . gene_id "ERV316A3_15q14c"; transcript_id "ERV316A3_15q14c"; locus "ERV316A3_15q14c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2355"; repClass "LTR"; repEnd "4829"; repFamily "ERVL"; repLeft "-397"; repStart "3543"; chr15 rmsk exon 39130722 39131086 790 + . gene_id "ERV316A3_15q14c"; transcript_id "ERV316A3_15q14c"; locus "ERV316A3_15q14c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2355"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "-9"; repStart "10"; ### ERV316A3_15q14d ### chr15 rmsk gene 39548084 39550354 . + . gene_id "ERV316A3_15q14d"; transcript_id "ERV316A3_15q14d"; locus "ERV316A3_15q14d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2357"; model_cov "1829"; model_pct "35.0"; chr15 rmsk exon 39548084 39548144 303 + . gene_id "ERV316A3_15q14d"; transcript_id "ERV316A3_15q14d"; locus "ERV316A3_15q14d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2357"; repClass "LTR"; repEnd "3350"; repFamily "ERVL"; repLeft "-1876"; repStart "3290"; chr15 rmsk exon 39548173 39549879 5077 + . gene_id "ERV316A3_15q14d"; transcript_id "ERV316A3_15q14d"; locus "ERV316A3_15q14d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2357"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "3407"; chr15 rmsk exon 39549967 39550354 1394 + . gene_id "ERV316A3_15q14d"; transcript_id "ERV316A3_15q14d"; locus "ERV316A3_15q14d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2357"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-12"; repStart "34"; ### ERVLE_15q14e ### chr15 rmsk gene 39634801 39637230 . - . gene_id "ERVLE_15q14e"; transcript_id "ERVLE_15q14e"; locus "ERVLE_15q14e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3126"; model_cov "2012"; model_pct "35.5"; chr15 rmsk exon 39634801 39635053 451 - . gene_id "ERVLE_15q14e"; transcript_id "ERVLE_15q14e"; locus "ERVLE_15q14e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3126"; repClass "LTR"; repEnd "2737"; repFamily "ERVL"; repLeft "2476"; repStart "-2930"; chr15 rmsk exon 39635348 39635403 451 - . gene_id "ERVLE_15q14e"; transcript_id "ERVLE_15q14e"; locus "ERVLE_15q14e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3126"; repClass "LTR"; repEnd "2475"; repFamily "ERVL"; repLeft "2422"; repStart "-3192"; chr15 rmsk exon 39635549 39637230 1904 - . gene_id "ERVLE_15q14e"; transcript_id "ERVLE_15q14e"; locus "ERVLE_15q14e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3126"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "5"; repStart "-3964"; ### ERV316A3_15q15.1a ### chr15 rmsk gene 40314799 40320531 . - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2358"; model_cov "2371"; model_pct "45.4"; chr15 rmsk exon 40314799 40315215 1084 - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2358"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "7"; repStart "-2"; chr15 rmsk exon 40315301 40316605 3679 - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2358"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "3766"; repStart "-91"; chr15 rmsk exon 40316960 40317287 1255 - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2358"; repClass "LTR"; repEnd "1875"; repFamily "ERVL"; repLeft "1562"; repStart "-3351"; chr15 rmsk exon 40319653 40320277 1255 - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2358"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "872"; repStart "-3665"; chr15 rmsk exon 40320391 40320531 393 - . gene_id "ERV316A3_15q15.1a"; transcript_id "ERV316A3_15q15.1a"; locus "ERV316A3_15q15.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2358"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "1"; repStart "-291"; ### HERVK11_15q15.1 ### chr15 rmsk gene 40686078 40690090 . - . gene_id "HERVK11_15q15.1"; transcript_id "HERVK11_15q15.1"; locus "HERVK11_15q15.1"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0086"; model_cov "1875"; model_pct "23.6"; chr15 rmsk exon 40686078 40687051 6461 - . gene_id "HERVK11_15q15.1"; transcript_id "HERVK11_15q15.1"; locus "HERVK11_15q15.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0086"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "1"; repStart "-14"; chr15 rmsk exon 40687052 40688045 8259 - . gene_id "HERVK11_15q15.1"; transcript_id "HERVK11_15q15.1"; locus "HERVK11_15q15.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0086"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chr15 rmsk exon 40688031 40688266 1759 - . gene_id "HERVK11_15q15.1"; transcript_id "HERVK11_15q15.1"; locus "HERVK11_15q15.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0086"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "6528"; repStart "-1186"; chr15 rmsk exon 40689452 40690090 5243 - . gene_id "HERVK11_15q15.1"; transcript_id "HERVK11_15q15.1"; locus "HERVK11_15q15.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0086"; repClass "LTR"; repEnd "6336"; repFamily "ERVK"; repLeft "5696"; repStart "-1617"; ### HERVH_15q15.1a ### chr15 rmsk gene 41131296 41135133 . + . gene_id "HERVH_15q15.1a"; transcript_id "HERVH_15q15.1a"; locus "HERVH_15q15.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1051"; model_cov "3507"; model_pct "45.5"; chr15 rmsk exon 41131296 41131816 3031 + . gene_id "HERVH_15q15.1a"; transcript_id "HERVH_15q15.1a"; locus "HERVH_15q15.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1051"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 41131817 41132279 2050 + . gene_id "HERVH_15q15.1a"; transcript_id "HERVH_15q15.1a"; locus "HERVH_15q15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1051"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "-7218"; repStart "1"; chr15 rmsk exon 41132304 41132939 3309 + . gene_id "HERVH_15q15.1a"; transcript_id "HERVH_15q15.1a"; locus "HERVH_15q15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1051"; repClass "LTR"; repEnd "1385"; repFamily "ERV1"; repLeft "-6328"; repStart "778"; chr15 rmsk exon 41133017 41135133 16806 + . gene_id "HERVH_15q15.1a"; transcript_id "HERVH_15q15.1a"; locus "HERVH_15q15.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1051"; repClass "LTR"; repEnd "4503"; repFamily "ERV1"; repLeft "-3210"; repStart "2097"; ### HERVH_15q15.1b ### chr15 rmsk gene 41135450 41137621 . + . gene_id "HERVH_15q15.1b"; transcript_id "HERVH_15q15.1b"; locus "HERVH_15q15.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1052"; model_cov "1859"; model_pct "24.1"; chr15 rmsk exon 41135450 41136648 16806 + . gene_id "HERVH_15q15.1b"; transcript_id "HERVH_15q15.1b"; locus "HERVH_15q15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1052"; repClass "LTR"; repEnd "4336"; repFamily "ERV1"; repLeft "-3377"; repStart "3207"; chr15 rmsk exon 41136637 41136826 1162 + . gene_id "HERVH_15q15.1b"; transcript_id "HERVH_15q15.1b"; locus "HERVH_15q15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1052"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6758"; chr15 rmsk exon 41136878 41137435 3699 + . gene_id "HERVH_15q15.1b"; transcript_id "HERVH_15q15.1b"; locus "HERVH_15q15.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1052"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr15 rmsk exon 41137436 41137621 1416 + . gene_id "HERVH_15q15.1b"; transcript_id "HERVH_15q15.1b"; locus "HERVH_15q15.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1052"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "-288"; repStart "1"; ### HERVIP10F_15q15.1 ### chr15 rmsk gene 41587503 41593097 . + . gene_id "HERVIP10F_15q15.1"; transcript_id "HERVIP10F_15q15.1"; locus "HERVIP10F_15q15.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0099"; model_cov "5280"; model_pct "68.2"; chr15 rmsk exon 41587503 41592733 42218 + . gene_id "HERVIP10F_15q15.1"; transcript_id "HERVIP10F_15q15.1"; locus "HERVIP10F_15q15.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0099"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "2457"; chr15 rmsk exon 41592734 41593097 2866 + . gene_id "HERVIP10F_15q15.1"; transcript_id "HERVIP10F_15q15.1"; locus "HERVIP10F_15q15.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0099"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-171"; repStart "1"; ### ERV316A3_15q15.1b ### chr15 rmsk gene 42119485 42121564 . - . gene_id "ERV316A3_15q15.1b"; transcript_id "ERV316A3_15q15.1b"; locus "ERV316A3_15q15.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2359"; model_cov "1297"; model_pct "24.8"; chr15 rmsk exon 42119485 42119790 1408 - . gene_id "ERV316A3_15q15.1b"; transcript_id "ERV316A3_15q15.1b"; locus "ERV316A3_15q15.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2359"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "147"; repStart "0"; chr15 rmsk exon 42120161 42120297 1408 - . gene_id "ERV316A3_15q15.1b"; transcript_id "ERV316A3_15q15.1b"; locus "ERV316A3_15q15.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2359"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "2"; repStart "-310"; chr15 rmsk exon 42120298 42121564 2928 - . gene_id "ERV316A3_15q15.1b"; transcript_id "ERV316A3_15q15.1b"; locus "ERV316A3_15q15.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2359"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3929"; repStart "0"; ### ERVLE_15q15.1 ### chr15 rmsk gene 42289605 42292266 . + . gene_id "ERVLE_15q15.1"; transcript_id "ERVLE_15q15.1"; locus "ERVLE_15q15.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3127"; model_cov "1838"; model_pct "32.4"; chr15 rmsk exon 42289605 42289726 2238 + . gene_id "ERVLE_15q15.1"; transcript_id "ERVLE_15q15.1"; locus "ERVLE_15q15.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3127"; repClass "LTR"; repEnd "126"; repFamily "ERVL"; repLeft "-5541"; repStart "5"; chr15 rmsk exon 42290117 42290525 2238 + . gene_id "ERVLE_15q15.1"; transcript_id "ERVLE_15q15.1"; locus "ERVLE_15q15.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3127"; repClass "LTR"; repEnd "561"; repFamily "ERVL"; repLeft "-5106"; repStart "127"; chr15 rmsk exon 42290820 42291761 2238 + . gene_id "ERVLE_15q15.1"; transcript_id "ERVLE_15q15.1"; locus "ERVLE_15q15.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3127"; repClass "LTR"; repEnd "1523"; repFamily "ERVL"; repLeft "-4144"; repStart "515"; chr15 rmsk exon 42291997 42292266 474 + . gene_id "ERVLE_15q15.1"; transcript_id "ERVLE_15q15.1"; locus "ERVLE_15q15.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3127"; repClass "LTR"; repEnd "2089"; repFamily "ERVL"; repLeft "-3578"; repStart "1814"; ### HERVH_15q15.2 ### chr15 rmsk gene 42884759 42890348 . + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1053"; model_cov "5061"; model_pct "65.6"; chr15 rmsk exon 42884759 42885185 3287 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 42885186 42887893 12272 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr15 rmsk exon 42887873 42888021 856 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr15 rmsk exon 42888012 42889564 6832 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "4992"; repFamily "ERV1"; repLeft "-2721"; repStart "3492"; chr15 rmsk exon 42889544 42889959 2758 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7296"; chr15 rmsk exon 42889960 42890348 2011 + . gene_id "HERVH_15q15.2"; transcript_id "HERVH_15q15.2"; locus "HERVH_15q15.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1053"; repClass "LTR"; repEnd "457"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### ERV316A3_15q15.2 ### chr15 rmsk gene 42935782 42937078 . + . gene_id "ERV316A3_15q15.2"; transcript_id "ERV316A3_15q15.2"; locus "ERV316A3_15q15.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2360"; model_cov "737"; model_pct "14.1"; chr15 rmsk exon 42935782 42936071 2480 + . gene_id "ERV316A3_15q15.2"; transcript_id "ERV316A3_15q15.2"; locus "ERV316A3_15q15.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2360"; repClass "LTR"; repEnd "4063"; repFamily "ERVL"; repLeft "-1163"; repStart "3734"; chr15 rmsk exon 42936378 42936429 2480 + . gene_id "ERV316A3_15q15.2"; transcript_id "ERV316A3_15q15.2"; locus "ERV316A3_15q15.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2360"; repClass "LTR"; repEnd "4108"; repFamily "ERVL"; repLeft "-1118"; repStart "4064"; chr15 rmsk exon 42936727 42937078 2480 + . gene_id "ERV316A3_15q15.2"; transcript_id "ERV316A3_15q15.2"; locus "ERV316A3_15q15.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2360"; repClass "LTR"; repEnd "4473"; repFamily "ERVL"; repLeft "-753"; repStart "4109"; ### MER101_15q15.2 ### chr15 rmsk gene 43170341 43171051 . - . gene_id "MER101_15q15.2"; transcript_id "MER101_15q15.2"; locus "MER101_15q15.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0334"; model_cov "675"; model_pct "10.2"; chr15 rmsk exon 43170341 43170958 3149 - . gene_id "MER101_15q15.2"; transcript_id "MER101_15q15.2"; locus "MER101_15q15.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0334"; repClass "LTR"; repEnd "3535"; repFamily "ERV1"; repLeft "2919"; repStart "-3104"; chr15 rmsk exon 43170983 43171051 263 - . gene_id "MER101_15q15.2"; transcript_id "MER101_15q15.2"; locus "MER101_15q15.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0334"; repClass "LTR"; repEnd "2681"; repFamily "ERV1"; repLeft "2622"; repStart "-3958"; ### HERV9_15q21.1a ### chr15 rmsk gene 44861990 44865787 . - . gene_id "HERV9_15q21.1a"; transcript_id "HERV9_15q21.1a"; locus "HERV9_15q21.1a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0162"; model_cov "3425"; model_pct "40.6"; chr15 rmsk exon 44861990 44862071 645 - . gene_id "HERV9_15q21.1a"; transcript_id "HERV9_15q21.1a"; locus "HERV9_15q21.1a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0162"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "1"; repStart "-437"; chr15 rmsk exon 44862072 44862356 12060 - . gene_id "HERV9_15q21.1a"; transcript_id "HERV9_15q21.1a"; locus "HERV9_15q21.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0162"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "8163"; repStart "0"; chr15 rmsk exon 44862662 44863892 12060 - . gene_id "HERV9_15q21.1a"; transcript_id "HERV9_15q21.1a"; locus "HERV9_15q21.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0162"; repClass "LTR"; repEnd "8162"; repFamily "ERV1"; repLeft "6911"; repStart "-274"; chr15 rmsk exon 44863891 44865787 15430 - . gene_id "HERV9_15q21.1a"; transcript_id "HERV9_15q21.1a"; locus "HERV9_15q21.1a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0162"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "3685"; repStart "-2850"; ### HERV9_15q21.1b ### chr15 rmsk gene 44872302 44876375 . - . gene_id "HERV9_15q21.1b"; transcript_id "HERV9_15q21.1b"; locus "HERV9_15q21.1b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0163"; model_cov "3669"; model_pct "43.5"; chr15 rmsk exon 44872302 44875879 20603 - . gene_id "HERV9_15q21.1b"; transcript_id "HERV9_15q21.1b"; locus "HERV9_15q21.1b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0163"; repClass "LTR"; repEnd "3698"; repFamily "ERV1"; repLeft "29"; repStart "-4738"; chr15 rmsk exon 44875900 44876375 3427 - . gene_id "HERV9_15q21.1b"; transcript_id "HERV9_15q21.1b"; locus "HERV9_15q21.1b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0163"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "16"; repStart "0"; ### HUERSP1_15q21.1a ### chr15 rmsk gene 44876665 44883399 . - . gene_id "HUERSP1_15q21.1a"; transcript_id "HUERSP1_15q21.1a"; locus "HUERSP1_15q21.1a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0174"; model_cov "4643"; model_pct "74.1"; chr15 rmsk exon 44876665 44876799 874 - . gene_id "HUERSP1_15q21.1a"; transcript_id "HUERSP1_15q21.1a"; locus "HUERSP1_15q21.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0174"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "1"; repStart "-556"; chr15 rmsk exon 44876800 44877612 8837 - . gene_id "HUERSP1_15q21.1a"; transcript_id "HUERSP1_15q21.1a"; locus "HUERSP1_15q21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0174"; repClass "LTR"; repEnd "5893"; repFamily "ERV1"; repLeft "5366"; repStart "-370"; chr15 rmsk exon 44877922 44882678 22131 - . gene_id "HUERSP1_15q21.1a"; transcript_id "HUERSP1_15q21.1a"; locus "HUERSP1_15q21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0174"; repClass "LTR"; repEnd "5365"; repFamily "ERV1"; repLeft "1249"; repStart "-898"; chr15 rmsk exon 44882679 44883399 4247 - . gene_id "HUERSP1_15q21.1a"; transcript_id "HUERSP1_15q21.1a"; locus "HUERSP1_15q21.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0174"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_15q21.1a ### chr15 rmsk gene 44931679 44934370 . + . gene_id "ERVLB4_15q21.1a"; transcript_id "ERVLB4_15q21.1a"; locus "ERVLB4_15q21.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1513"; model_cov "1976"; model_pct "34.6"; chr15 rmsk exon 44931679 44931936 637 + . gene_id "ERVLB4_15q21.1a"; transcript_id "ERVLB4_15q21.1a"; locus "ERVLB4_15q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1513"; repClass "LTR"; repEnd "804"; repFamily "ERVL"; repLeft "-4910"; repStart "549"; chr15 rmsk exon 44932293 44932890 2300 + . gene_id "ERVLB4_15q21.1a"; transcript_id "ERVLB4_15q21.1a"; locus "ERVLB4_15q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1513"; repClass "LTR"; repEnd "1630"; repFamily "ERVL"; repLeft "-4084"; repStart "996"; chr15 rmsk exon 44933326 44934370 4441 + . gene_id "ERVLB4_15q21.1a"; transcript_id "ERVLB4_15q21.1a"; locus "ERVLB4_15q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1513"; repClass "LTR"; repEnd "2720"; repFamily "ERVL"; repLeft "-2994"; repStart "1633"; ### ERVLB4_15q21.1b ### chr15 rmsk gene 44948064 44949935 . - . gene_id "ERVLB4_15q21.1b"; transcript_id "ERVLB4_15q21.1b"; locus "ERVLB4_15q21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1514"; model_cov "1726"; model_pct "30.2"; chr15 rmsk exon 44948064 44949459 5778 - . gene_id "ERVLB4_15q21.1b"; transcript_id "ERVLB4_15q21.1b"; locus "ERVLB4_15q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1514"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "1633"; repStart "-2610"; chr15 rmsk exon 44949678 44949935 575 - . gene_id "ERVLB4_15q21.1b"; transcript_id "ERVLB4_15q21.1b"; locus "ERVLB4_15q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1514"; repClass "LTR"; repEnd "804"; repFamily "ERVL"; repLeft "549"; repStart "-4910"; ### HUERSP1_15q21.1b ### chr15 rmsk gene 45004262 45010004 . + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0175"; model_cov "4873"; model_pct "77.8"; chr15 rmsk exon 45004262 45004985 4474 + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0175"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 45004986 45008362 18045 + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0175"; repClass "LTR"; repEnd "3332"; repFamily "ERV1"; repLeft "-2931"; repStart "1"; chr15 rmsk exon 45008362 45008750 6602 + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0175"; repClass "LTR"; repEnd "5423"; repFamily "ERV1"; repLeft "-840"; repStart "4719"; chr15 rmsk exon 45009061 45009874 6602 + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0175"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "5424"; chr15 rmsk exon 45009875 45010004 946 + . gene_id "HUERSP1_15q21.1b"; transcript_id "HUERSP1_15q21.1b"; locus "HUERSP1_15q21.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0175"; repClass "LTR"; repEnd "130"; repFamily "ERV1"; repLeft "-561"; repStart "1"; ### HERV9_15q21.1c ### chr15 rmsk gene 45010300 45014710 . + . gene_id "HERV9_15q21.1c"; transcript_id "HERV9_15q21.1c"; locus "HERV9_15q21.1c"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0164"; model_cov "3643"; model_pct "43.2"; chr15 rmsk exon 45010300 45010775 3443 + . gene_id "HERV9_15q21.1c"; transcript_id "HERV9_15q21.1c"; locus "HERV9_15q21.1c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0164"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "16"; chr15 rmsk exon 45010796 45012638 20988 + . gene_id "HERV9_15q21.1c"; transcript_id "HERV9_15q21.1c"; locus "HERV9_15q21.1c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0164"; repClass "LTR"; repEnd "1901"; repFamily "ERV1"; repLeft "-6535"; repStart "55"; chr15 rmsk exon 45012916 45014710 20988 + . gene_id "HERV9_15q21.1c"; transcript_id "HERV9_15q21.1c"; locus "HERV9_15q21.1c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0164"; repClass "LTR"; repEnd "3699"; repFamily "ERV1"; repLeft "-4737"; repStart "1902"; ### LTR25_15q21.1a ### chr15 rmsk gene 45049247 45052678 . - . gene_id "LTR25_15q21.1a"; transcript_id "LTR25_15q21.1a"; locus "LTR25_15q21.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0112"; model_cov "3671"; model_pct "51.1"; chr15 rmsk exon 45049247 45050086 12225 - . gene_id "LTR25_15q21.1a"; transcript_id "LTR25_15q21.1a"; locus "LTR25_15q21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0112"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6359"; repStart "-1"; chr15 rmsk exon 45050381 45052138 12225 - . gene_id "LTR25_15q21.1a"; transcript_id "LTR25_15q21.1a"; locus "LTR25_15q21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0112"; repClass "LTR"; repEnd "6358"; repFamily "ERV1"; repLeft "3956"; repStart "-830"; chr15 rmsk exon 45052240 45052678 2365 - . gene_id "LTR25_15q21.1a"; transcript_id "LTR25_15q21.1a"; locus "LTR25_15q21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0112"; repClass "LTR"; repEnd "1224"; repFamily "ERV1"; repLeft "783"; repStart "-5964"; ### MER34B_15q21.1 ### chr15 rmsk gene 45057154 45057488 . + . gene_id "MER34B_15q21.1"; transcript_id "MER34B_15q21.1"; locus "MER34B_15q21.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0242"; model_cov "581"; model_pct "10.8"; chr15 rmsk exon 45057154 45057488 884 + . gene_id "MER34B_15q21.1"; transcript_id "MER34B_15q21.1"; locus "MER34B_15q21.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0242"; repClass "LTR"; repEnd "2108"; repFamily "ERV1"; repLeft "-3248"; repStart "1527"; ### LTR25_15q21.1b ### chr15 rmsk gene 45057842 45058561 . - . gene_id "LTR25_15q21.1b"; transcript_id "LTR25_15q21.1b"; locus "LTR25_15q21.1b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0113"; model_cov "723"; model_pct "10.1"; chr15 rmsk exon 45057842 45058561 4159 - . gene_id "LTR25_15q21.1b"; transcript_id "LTR25_15q21.1b"; locus "LTR25_15q21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0113"; repClass "LTR"; repEnd "752"; repFamily "ERV1"; repLeft "29"; repStart "-6436"; ### ERVLE_15q21.1a ### chr15 rmsk gene 45221155 45222662 . - . gene_id "ERVLE_15q21.1a"; transcript_id "ERVLE_15q21.1a"; locus "ERVLE_15q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3128"; model_cov "1095"; model_pct "19.3"; chr15 rmsk exon 45221155 45221523 1513 - . gene_id "ERVLE_15q21.1a"; transcript_id "ERVLE_15q21.1a"; locus "ERVLE_15q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3128"; repClass "LTR"; repEnd "5651"; repFamily "ERVL"; repLeft "5269"; repStart "-16"; chr15 rmsk exon 45221822 45222056 1513 - . gene_id "ERVLE_15q21.1a"; transcript_id "ERVLE_15q21.1a"; locus "ERVLE_15q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3128"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "5034"; repStart "-399"; chr15 rmsk exon 45222055 45222360 1260 - . gene_id "ERVLE_15q21.1a"; transcript_id "ERVLE_15q21.1a"; locus "ERVLE_15q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3128"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "4004"; repStart "-1344"; chr15 rmsk exon 45222515 45222662 646 - . gene_id "ERVLE_15q21.1a"; transcript_id "ERVLE_15q21.1a"; locus "ERVLE_15q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3128"; repClass "LTR"; repEnd "1665"; repFamily "ERVL"; repLeft "1505"; repStart "-4002"; ### HERVK14C_15q21.1 ### chr15 rmsk gene 45234478 45243073 . - . gene_id "HERVK14C_15q21.1"; transcript_id "HERVK14C_15q21.1"; locus "HERVK14C_15q21.1"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0023"; model_cov "7387"; model_pct "99.4"; chr15 rmsk exon 45234478 45235063 4820 - . gene_id "HERVK14C_15q21.1"; transcript_id "HERVK14C_15q21.1"; locus "HERVK14C_15q21.1"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0023"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr15 rmsk exon 45235064 45242440 63138 - . gene_id "HERVK14C_15q21.1"; transcript_id "HERVK14C_15q21.1"; locus "HERVK14C_15q21.1"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0023"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "47"; repStart "0"; chr15 rmsk exon 45242487 45243073 4884 - . gene_id "HERVK14C_15q21.1"; transcript_id "HERVK14C_15q21.1"; locus "HERVK14C_15q21.1"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0023"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVL_15q21.1 ### chr15 rmsk gene 45285671 45287857 . + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0388"; model_cov "1678"; model_pct "29.1"; chr15 rmsk exon 45285671 45286355 700 + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0388"; repClass "LTR"; repEnd "1942"; repFamily "ERVL"; repLeft "-3815"; repStart "1111"; chr15 rmsk exon 45286471 45286823 1058 + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0388"; repClass "LTR"; repEnd "2366"; repFamily "ERVL"; repLeft "-3391"; repStart "2019"; chr15 rmsk exon 45287103 45287148 1058 + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0388"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-3354"; repStart "2367"; chr15 rmsk exon 45287184 45287372 978 + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0388"; repClass "LTR"; repEnd "2591"; repFamily "ERVL"; repLeft "-3166"; repStart "2388"; chr15 rmsk exon 45287598 45287857 978 + . gene_id "ERVL_15q21.1"; transcript_id "ERVL_15q21.1"; locus "ERVL_15q21.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0388"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "-2904"; repStart "2592"; ### ERV316A3_15q21.1a ### chr15 rmsk gene 45565763 45569117 . + . gene_id "ERV316A3_15q21.1a"; transcript_id "ERV316A3_15q21.1a"; locus "ERV316A3_15q21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2361"; model_cov "1926"; model_pct "36.9"; chr15 rmsk exon 45565763 45565897 345 + . gene_id "ERV316A3_15q21.1a"; transcript_id "ERV316A3_15q21.1a"; locus "ERV316A3_15q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2361"; repClass "LTR"; repEnd "719"; repFamily "ERVL"; repLeft "-4507"; repStart "587"; chr15 rmsk exon 45566504 45566691 593 + . gene_id "ERV316A3_15q21.1a"; transcript_id "ERV316A3_15q21.1a"; locus "ERV316A3_15q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2361"; repClass "LTR"; repEnd "891"; repFamily "ERVL"; repLeft "-4335"; repStart "704"; chr15 rmsk exon 45567285 45568001 884 + . gene_id "ERV316A3_15q21.1a"; transcript_id "ERV316A3_15q21.1a"; locus "ERV316A3_15q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2361"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "-3724"; repStart "723"; chr15 rmsk exon 45568322 45569117 2248 + . gene_id "ERV316A3_15q21.1a"; transcript_id "ERV316A3_15q21.1a"; locus "ERV316A3_15q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2361"; repClass "LTR"; repEnd "3269"; repFamily "ERVL"; repLeft "-1957"; repStart "2441"; ### ERV316A3_15q21.1m ### chr15 rmsk gene 45620146 45622408 . + . gene_id "ERV316A3_15q21.1m"; transcript_id "ERV316A3_15q21.1m"; locus "ERV316A3_15q21.1m"; category "opposite*"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2364"; model_cov "1050"; model_pct "20.1"; chr15 rmsk exon 45620146 45620728 2182 + . gene_id "ERV316A3_15q21.1m"; transcript_id "ERV316A3_15q21.1m"; locus "ERV316A3_15q21.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2364"; prev_strand "-"; repClass "LTR"; repEnd "3022"; repFamily "ERVL"; repLeft "2437"; repStart "-2204"; chr15 rmsk exon 45620728 45621817 4541 + . gene_id "ERV316A3_15q21.1m"; transcript_id "ERV316A3_15q21.1m"; locus "ERV316A3_15q21.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2364"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4175"; chr15 rmsk exon 45621819 45621995 770 + . gene_id "ERV316A3_15q21.1m"; transcript_id "ERV316A3_15q21.1m"; locus "ERV316A3_15q21.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2364"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "-280"; repStart "1"; chr15 rmsk exon 45622174 45622408 577 + . gene_id "ERV316A3_15q21.1m"; transcript_id "ERV316A3_15q21.1m"; locus "ERV316A3_15q21.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2364"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "214"; ### ERV316A3_15q21.1b ### chr15 rmsk gene 45707571 45708988 . + . gene_id "ERV316A3_15q21.1b"; transcript_id "ERV316A3_15q21.1b"; locus "ERV316A3_15q21.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2365"; model_cov "827"; model_pct "15.8"; chr15 rmsk exon 45707571 45707968 1770 + . gene_id "ERV316A3_15q21.1b"; transcript_id "ERV316A3_15q21.1b"; locus "ERV316A3_15q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2365"; repClass "LTR"; repEnd "3900"; repFamily "ERVL"; repLeft "-1326"; repStart "3477"; chr15 rmsk exon 45708583 45708988 1770 + . gene_id "ERV316A3_15q21.1b"; transcript_id "ERV316A3_15q21.1b"; locus "ERV316A3_15q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2365"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-921"; repStart "3901"; ### ERV316A3_15q21.1c ### chr15 rmsk gene 45764435 45766045 . - . gene_id "ERV316A3_15q21.1c"; transcript_id "ERV316A3_15q21.1c"; locus "ERV316A3_15q21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2366"; model_cov "856"; model_pct "16.4"; chr15 rmsk exon 45764435 45764811 1151 - . gene_id "ERV316A3_15q21.1c"; transcript_id "ERV316A3_15q21.1c"; locus "ERV316A3_15q21.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2366"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr15 rmsk exon 45764831 45765756 2555 - . gene_id "ERV316A3_15q21.1c"; transcript_id "ERV316A3_15q21.1c"; locus "ERV316A3_15q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2366"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "4455"; repStart "-27"; chr15 rmsk exon 45765936 45766045 291 - . gene_id "ERV316A3_15q21.1c"; transcript_id "ERV316A3_15q21.1c"; locus "ERV316A3_15q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2366"; repClass "LTR"; repEnd "2836"; repFamily "ERVL"; repLeft "2724"; repStart "-2390"; ### ERV316A3_15q21.1d ### chr15 rmsk gene 45766131 45770240 . - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2368"; model_cov "2736"; model_pct "52.4"; chr15 rmsk exon 45766131 45766377 1103 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "2838"; repStart "-2140"; chr15 rmsk exon 45766581 45767126 1742 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "2834"; repFamily "ERVL"; repLeft "2259"; repStart "-2392"; chr15 rmsk exon 45767334 45767398 350 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "2265"; repFamily "ERVL"; repLeft "2205"; repStart "-2961"; chr15 rmsk exon 45767689 45767739 350 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "2204"; repFamily "ERVL"; repLeft "2159"; repStart "-3022"; chr15 rmsk exon 45768128 45769787 5653 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "1997"; repFamily "ERVL"; repLeft "350"; repStart "-3229"; chr15 rmsk exon 45770093 45770240 5653 - . gene_id "ERV316A3_15q21.1d"; transcript_id "ERV316A3_15q21.1d"; locus "ERV316A3_15q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2368"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "188"; repStart "-4877"; ### ERV316A3_15q21.1e ### chr15 rmsk gene 45865975 45869730 . + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2369"; model_cov "2573"; model_pct "49.2"; chr15 rmsk exon 45865975 45866302 652 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "-4"; repStart "3"; chr15 rmsk exon 45866306 45866935 3813 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "646"; repFamily "ERVL"; repLeft "-4580"; repStart "7"; chr15 rmsk exon 45867232 45867961 3813 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "1364"; repFamily "ERVL"; repLeft "-3862"; repStart "647"; chr15 rmsk exon 45868124 45868477 904 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "-1852"; repStart "3032"; chr15 rmsk exon 45868487 45869350 2853 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4350"; chr15 rmsk exon 45869353 45869730 755 + . gene_id "ERV316A3_15q21.1e"; transcript_id "ERV316A3_15q21.1e"; locus "ERV316A3_15q21.1e"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2369"; repClass "LTR"; repEnd "416"; repFamily "ERVL"; repLeft "-6"; repStart "2"; ### ERVLE_15q21.1b ### chr15 rmsk gene 45881780 45882796 . - . gene_id "ERVLE_15q21.1b"; transcript_id "ERVLE_15q21.1b"; locus "ERVLE_15q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3129"; model_cov "921"; model_pct "16.3"; chr15 rmsk exon 45881780 45882014 585 - . gene_id "ERVLE_15q21.1b"; transcript_id "ERVLE_15q21.1b"; locus "ERVLE_15q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3129"; repClass "LTR"; repEnd "3346"; repFamily "ERVL"; repLeft "3111"; repStart "-2321"; chr15 rmsk exon 45882122 45882796 1822 - . gene_id "ERVLE_15q21.1b"; transcript_id "ERVLE_15q21.1b"; locus "ERVLE_15q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3129"; repClass "LTR"; repEnd "2822"; repFamily "ERVL"; repLeft "2136"; repStart "-2845"; ### ERV316A3_15q21.1f ### chr15 rmsk gene 45973789 45975068 . + . gene_id "ERV316A3_15q21.1f"; transcript_id "ERV316A3_15q21.1f"; locus "ERV316A3_15q21.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2371"; model_cov "1348"; model_pct "25.8"; chr15 rmsk exon 45973789 45974326 938 + . gene_id "ERV316A3_15q21.1f"; transcript_id "ERV316A3_15q21.1f"; locus "ERV316A3_15q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2371"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "-1008"; repStart "3635"; chr15 rmsk exon 45974340 45974947 677 + . gene_id "ERV316A3_15q21.1f"; transcript_id "ERV316A3_15q21.1f"; locus "ERV316A3_15q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2371"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "-649"; repStart "3965"; chr15 rmsk exon 45974929 45975068 302 + . gene_id "ERV316A3_15q21.1f"; transcript_id "ERV316A3_15q21.1f"; locus "ERV316A3_15q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2371"; repClass "LTR"; repEnd "4961"; repFamily "ERVL"; repLeft "-265"; repStart "4808"; ### ERV316A3_15q21.1g ### chr15 rmsk gene 46034226 46037689 . - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2372"; model_cov "2066"; model_pct "39.5"; chr15 rmsk exon 46034226 46034630 1086 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "16"; repStart "0"; chr15 rmsk exon 46034658 46034856 1154 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "4988"; repStart "-27"; chr15 rmsk exon 46035282 46035401 1154 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "4987"; repFamily "ERVL"; repLeft "4868"; repStart "-239"; chr15 rmsk exon 46035787 46037083 3946 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "4872"; repFamily "ERVL"; repLeft "3508"; repStart "-354"; chr15 rmsk exon 46037194 46037500 690 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "3047"; repFamily "ERVL"; repLeft "2739"; repStart "-2179"; chr15 rmsk exon 46037625 46037689 1220 - . gene_id "ERV316A3_15q21.1g"; transcript_id "ERV316A3_15q21.1g"; locus "ERV316A3_15q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2372"; repClass "LTR"; repEnd "2336"; repFamily "ERVL"; repLeft "2272"; repStart "-2890"; ### ERV316A3_15q21.1h ### chr15 rmsk gene 46037731 46041139 . - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2373"; model_cov "2349"; model_pct "44.9"; chr15 rmsk exon 46037731 46038583 1803 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "1683"; repStart "-2597"; chr15 rmsk exon 46038963 46039279 1504 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "1441"; repFamily "ERVL"; repLeft "1122"; repStart "-3785"; chr15 rmsk exon 46039382 46039930 1504 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "1121"; repFamily "ERVL"; repLeft "540"; repStart "-4105"; chr15 rmsk exon 46039955 46040177 585 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "737"; repFamily "ERVL"; repLeft "500"; repStart "-4489"; chr15 rmsk exon 46040487 46040754 585 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "499"; repFamily "ERVL"; repLeft "233"; repStart "-4727"; chr15 rmsk exon 46040756 46041139 930 - . gene_id "ERV316A3_15q21.1h"; transcript_id "ERV316A3_15q21.1h"; locus "ERV316A3_15q21.1h"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2373"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### PRIMAX_15q21.1 ### chr15 rmsk gene 46071005 46071705 . - . gene_id "PRIMAX_15q21.1"; transcript_id "PRIMAX_15q21.1"; locus "PRIMAX_15q21.1"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0031"; model_cov "452"; model_pct "11.0"; chr15 rmsk exon 46071005 46071190 399 - . gene_id "PRIMAX_15q21.1"; transcript_id "PRIMAX_15q21.1"; locus "PRIMAX_15q21.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0031"; repClass "LTR"; repEnd "3184"; repFamily "ERV1"; repLeft "3076"; repStart "-918"; chr15 rmsk exon 46071363 46071705 252 - . gene_id "PRIMAX_15q21.1"; transcript_id "PRIMAX_15q21.1"; locus "PRIMAX_15q21.1"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0031"; repClass "LTR"; repEnd "2816"; repFamily "ERV1"; repLeft "2472"; repStart "-1286"; ### ERV316A3_15q21.1i ### chr15 rmsk gene 46092844 46095086 . - . gene_id "ERV316A3_15q21.1i"; transcript_id "ERV316A3_15q21.1i"; locus "ERV316A3_15q21.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2374"; model_cov "1872"; model_pct "35.8"; chr15 rmsk exon 46092844 46093163 749 - . gene_id "ERV316A3_15q21.1i"; transcript_id "ERV316A3_15q21.1i"; locus "ERV316A3_15q21.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2374"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "4601"; repStart "-274"; chr15 rmsk exon 46093177 46094563 2505 - . gene_id "ERV316A3_15q21.1i"; transcript_id "ERV316A3_15q21.1i"; locus "ERV316A3_15q21.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2374"; repClass "LTR"; repEnd "2522"; repFamily "ERVL"; repLeft "1001"; repStart "-2704"; chr15 rmsk exon 46094728 46095086 743 - . gene_id "ERV316A3_15q21.1i"; transcript_id "ERV316A3_15q21.1i"; locus "ERV316A3_15q21.1i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2374"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "83"; repStart "-6"; ### ERV316A3_15q21.1j ### chr15 rmsk gene 46138050 46139568 . - . gene_id "ERV316A3_15q21.1j"; transcript_id "ERV316A3_15q21.1j"; locus "ERV316A3_15q21.1j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2375"; model_cov "1453"; model_pct "27.8"; chr15 rmsk exon 46138050 46138134 286 - . gene_id "ERV316A3_15q21.1j"; transcript_id "ERV316A3_15q21.1j"; locus "ERV316A3_15q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2375"; repClass "LTR"; repEnd "2988"; repFamily "ERVL"; repLeft "2906"; repStart "-2238"; chr15 rmsk exon 46138208 46138796 1346 - . gene_id "ERV316A3_15q21.1j"; transcript_id "ERV316A3_15q21.1j"; locus "ERV316A3_15q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2375"; repClass "LTR"; repEnd "2828"; repFamily "ERVL"; repLeft "2238"; repStart "-2398"; chr15 rmsk exon 46138818 46138952 511 - . gene_id "ERV316A3_15q21.1j"; transcript_id "ERV316A3_15q21.1j"; locus "ERV316A3_15q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2375"; repClass "LTR"; repEnd "1120"; repFamily "ERVL"; repLeft "988"; repStart "-4106"; chr15 rmsk exon 46138982 46139568 1182 - . gene_id "ERV316A3_15q21.1j"; transcript_id "ERV316A3_15q21.1j"; locus "ERV316A3_15q21.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2375"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "283"; repStart "-4294"; ### LTR25_15q21.1c ### chr15 rmsk gene 46143441 46145785 . + . gene_id "LTR25_15q21.1c"; transcript_id "LTR25_15q21.1c"; locus "LTR25_15q21.1c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0114"; model_cov "3156"; model_pct "43.9"; chr15 rmsk exon 46143441 46143587 558 + . gene_id "LTR25_15q21.1c"; transcript_id "LTR25_15q21.1c"; locus "LTR25_15q21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0114"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "-5768"; repStart "1279"; chr15 rmsk exon 46143583 46145342 5760 + . gene_id "LTR25_15q21.1c"; transcript_id "LTR25_15q21.1c"; locus "LTR25_15q21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0114"; repClass "LTR"; repEnd "4998"; repFamily "ERV1"; repLeft "-2190"; repStart "2300"; chr15 rmsk exon 46145479 46145785 1503 + . gene_id "LTR25_15q21.1c"; transcript_id "LTR25_15q21.1c"; locus "LTR25_15q21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0114"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6870"; ### ERVLE_15q21.1c ### chr15 rmsk gene 46231445 46235495 . - . gene_id "ERVLE_15q21.1c"; transcript_id "ERVLE_15q21.1c"; locus "ERVLE_15q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3130"; model_cov "1884"; model_pct "33.2"; chr15 rmsk exon 46231445 46231807 666 - . gene_id "ERVLE_15q21.1c"; transcript_id "ERVLE_15q21.1c"; locus "ERVLE_15q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3130"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4611"; repStart "-583"; chr15 rmsk exon 46231875 46232985 1909 - . gene_id "ERVLE_15q21.1c"; transcript_id "ERVLE_15q21.1c"; locus "ERVLE_15q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3130"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "1329"; repStart "-3207"; chr15 rmsk exon 46235222 46235495 447 - . gene_id "ERVLE_15q21.1c"; transcript_id "ERVLE_15q21.1c"; locus "ERVLE_15q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3130"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "931"; repStart "-4456"; ### ERVLE_15q21.1d ### chr15 rmsk gene 46325487 46326774 . - . gene_id "ERVLE_15q21.1d"; transcript_id "ERVLE_15q21.1d"; locus "ERVLE_15q21.1d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3131"; model_cov "827"; model_pct "14.6"; chr15 rmsk exon 46325487 46325947 905 - . gene_id "ERVLE_15q21.1d"; transcript_id "ERVLE_15q21.1d"; locus "ERVLE_15q21.1d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3131"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "17"; repStart "-157"; chr15 rmsk exon 46326022 46326774 1736 - . gene_id "ERVLE_15q21.1d"; transcript_id "ERVLE_15q21.1d"; locus "ERVLE_15q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3131"; repClass "LTR"; repEnd "5539"; repFamily "ERVL"; repLeft "4712"; repStart "-128"; ### ERVLB4_15q21.1c ### chr15 rmsk gene 46381337 46383617 . - . gene_id "ERVLB4_15q21.1c"; transcript_id "ERVLB4_15q21.1c"; locus "ERVLB4_15q21.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1516"; model_cov "1917"; model_pct "33.5"; chr15 rmsk exon 46381337 46381915 677 - . gene_id "ERVLB4_15q21.1c"; transcript_id "ERVLB4_15q21.1c"; locus "ERVLB4_15q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1516"; repClass "LTR"; repEnd "5633"; repFamily "ERVL"; repLeft "5063"; repStart "-81"; chr15 rmsk exon 46382023 46382988 1298 - . gene_id "ERVLB4_15q21.1c"; transcript_id "ERVLB4_15q21.1c"; locus "ERVLB4_15q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1516"; repClass "LTR"; repEnd "4796"; repFamily "ERVL"; repLeft "3717"; repStart "-918"; chr15 rmsk exon 46383362 46383617 506 - . gene_id "ERVLB4_15q21.1c"; transcript_id "ERVLB4_15q21.1c"; locus "ERVLB4_15q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1516"; repClass "LTR"; repEnd "3637"; repFamily "ERVL"; repLeft "3369"; repStart "-2077"; ### ERV316A3_15q21.1k ### chr15 rmsk gene 46526325 46529175 . - . gene_id "ERV316A3_15q21.1k"; transcript_id "ERV316A3_15q21.1k"; locus "ERV316A3_15q21.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2376"; model_cov "2201"; model_pct "42.1"; chr15 rmsk exon 46526325 46526615 554 - . gene_id "ERV316A3_15q21.1k"; transcript_id "ERV316A3_15q21.1k"; locus "ERV316A3_15q21.1k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2376"; repClass "LTR"; repEnd "325"; repFamily "ERVL"; repLeft "40"; repStart "-113"; chr15 rmsk exon 46526711 46527353 5081 - . gene_id "ERV316A3_15q21.1k"; transcript_id "ERV316A3_15q21.1k"; locus "ERV316A3_15q21.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2376"; repClass "LTR"; repEnd "5116"; repFamily "ERVL"; repLeft "4450"; repStart "-110"; chr15 rmsk exon 46527652 46529175 5081 - . gene_id "ERV316A3_15q21.1k"; transcript_id "ERV316A3_15q21.1k"; locus "ERV316A3_15q21.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2376"; repClass "LTR"; repEnd "4449"; repFamily "ERVL"; repLeft "2914"; repStart "-777"; ### ERV316A3_15q21.1l ### chr15 rmsk gene 46618985 46619931 . + . gene_id "ERV316A3_15q21.1l"; transcript_id "ERV316A3_15q21.1l"; locus "ERV316A3_15q21.1l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2377"; model_cov "867"; model_pct "16.6"; chr15 rmsk exon 46618985 46619146 356 + . gene_id "ERV316A3_15q21.1l"; transcript_id "ERV316A3_15q21.1l"; locus "ERV316A3_15q21.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2377"; repClass "LTR"; repEnd "2409"; repFamily "ERVL"; repLeft "-2817"; repStart "2249"; chr15 rmsk exon 46619153 46619389 471 + . gene_id "ERV316A3_15q21.1l"; transcript_id "ERV316A3_15q21.1l"; locus "ERV316A3_15q21.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2377"; repClass "LTR"; repEnd "2120"; repFamily "ERVL"; repLeft "-3106"; repStart "1909"; chr15 rmsk exon 46619432 46619931 1482 + . gene_id "ERV316A3_15q21.1l"; transcript_id "ERV316A3_15q21.1l"; locus "ERV316A3_15q21.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2377"; repClass "LTR"; repEnd "2998"; repFamily "ERVL"; repLeft "-2228"; repStart "2502"; ### MER4B_15q21.1a ### chr15 rmsk gene 46765805 46771662 . - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0382"; model_cov "3616"; model_pct "53.5"; chr15 rmsk exon 46765805 46766568 5396 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 46767430 46767862 5159 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "6652"; repFamily "ERV1"; repLeft "6197"; repStart "-106"; chr15 rmsk exon 46768939 46769501 5159 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "6196"; repFamily "ERV1"; repLeft "5626"; repStart "-562"; chr15 rmsk exon 46769502 46770303 2705 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "5391"; repFamily "ERV1"; repLeft "4452"; repStart "-1367"; chr15 rmsk exon 46770303 46770921 3605 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3442"; repStart "-2670"; chr15 rmsk exon 46770939 46771662 5373 - . gene_id "MER4B_15q21.1a"; transcript_id "MER4B_15q21.1a"; locus "MER4B_15q21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0382"; repClass "LTR"; repEnd "2670"; repFamily "ERV1"; repLeft "1664"; repStart "-4088"; ### LTR57_15q21.1 ### chr15 rmsk gene 46771663 46772189 . - . gene_id "LTR57_15q21.1"; transcript_id "LTR57_15q21.1"; locus "LTR57_15q21.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0149"; model_cov "587"; model_pct "11.0"; chr15 rmsk exon 46771663 46772189 1231 - . gene_id "LTR57_15q21.1"; transcript_id "LTR57_15q21.1"; locus "LTR57_15q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0149"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "993"; repStart "-3763"; ### MER4B_15q21.1b ### chr15 rmsk gene 46772190 46774406 . - . gene_id "MER4B_15q21.1b"; transcript_id "MER4B_15q21.1b"; locus "MER4B_15q21.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0383"; model_cov "1706"; model_pct "25.2"; chr15 rmsk exon 46772190 46772806 5373 - . gene_id "MER4B_15q21.1b"; transcript_id "MER4B_15q21.1b"; locus "MER4B_15q21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0383"; repClass "LTR"; repEnd "2670"; repFamily "ERV1"; repLeft "1810"; repStart "-4088"; chr15 rmsk exon 46772828 46773643 5191 - . gene_id "MER4B_15q21.1b"; transcript_id "MER4B_15q21.1b"; locus "MER4B_15q21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0383"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "1"; repStart "-5911"; chr15 rmsk exon 46773649 46774406 5037 - . gene_id "MER4B_15q21.1b"; transcript_id "MER4B_15q21.1b"; locus "MER4B_15q21.1b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0383"; repClass "LTR"; repEnd "761"; repFamily "ERV1"; repLeft "1"; repStart "-5"; ### ERVLE_15q21.1e ### chr15 rmsk gene 46813219 46815177 . - . gene_id "ERVLE_15q21.1e"; transcript_id "ERVLE_15q21.1e"; locus "ERVLE_15q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3133"; model_cov "1510"; model_pct "26.6"; chr15 rmsk exon 46813219 46813892 1075 - . gene_id "ERVLE_15q21.1e"; transcript_id "ERVLE_15q21.1e"; locus "ERVLE_15q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3133"; repClass "LTR"; repEnd "2377"; repFamily "ERVL"; repLeft "1698"; repStart "-3290"; chr15 rmsk exon 46814102 46814239 265 - . gene_id "ERVLE_15q21.1e"; transcript_id "ERVLE_15q21.1e"; locus "ERVLE_15q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3133"; repClass "LTR"; repEnd "1847"; repFamily "ERVL"; repLeft "1707"; repStart "-3820"; chr15 rmsk exon 46814499 46815177 1018 - . gene_id "ERVLE_15q21.1e"; transcript_id "ERVLE_15q21.1e"; locus "ERVLE_15q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3133"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "298"; repStart "-4678"; ### ERVLE_15q21.1f ### chr15 rmsk gene 46941690 46942249 . + . gene_id "ERVLE_15q21.1f"; transcript_id "ERVLE_15q21.1f"; locus "ERVLE_15q21.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3134"; model_cov "570"; model_pct "10.1"; chr15 rmsk exon 46941690 46942249 870 + . gene_id "ERVLE_15q21.1f"; transcript_id "ERVLE_15q21.1f"; locus "ERVLE_15q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3134"; repClass "LTR"; repEnd "5021"; repFamily "ERVL"; repLeft "-646"; repStart "4451"; ### HERVL_15q21.1 ### chr15 rmsk gene 46986008 46989099 . + . gene_id "HERVL_15q21.1"; transcript_id "HERVL_15q21.1"; locus "HERVL_15q21.1"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1120"; model_cov "2640"; model_pct "46.7"; chr15 rmsk exon 46986008 46988583 19333 + . gene_id "HERVL_15q21.1"; transcript_id "HERVL_15q21.1"; locus "HERVL_15q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1120"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3014"; chr15 rmsk exon 46988584 46989099 3069 + . gene_id "HERVL_15q21.1"; transcript_id "HERVL_15q21.1"; locus "HERVL_15q21.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1120"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_15q21.1g ### chr15 rmsk gene 47057189 47058572 . - . gene_id "ERVLE_15q21.1g"; transcript_id "ERVLE_15q21.1g"; locus "ERVLE_15q21.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3135"; model_cov "1416"; model_pct "25.0"; chr15 rmsk exon 47057189 47058118 2089 - . gene_id "ERVLE_15q21.1g"; transcript_id "ERVLE_15q21.1g"; locus "ERVLE_15q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3135"; repClass "LTR"; repEnd "5179"; repFamily "ERVL"; repLeft "4247"; repStart "-488"; chr15 rmsk exon 47058111 47058364 541 - . gene_id "ERVLE_15q21.1g"; transcript_id "ERVLE_15q21.1g"; locus "ERVLE_15q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3135"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "3286"; repStart "-2126"; chr15 rmsk exon 47058360 47058572 417 - . gene_id "ERVLE_15q21.1g"; transcript_id "ERVLE_15q21.1g"; locus "ERVLE_15q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3135"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "3101"; repStart "-2337"; ### MER4B_15q21.1c ### chr15 rmsk gene 47334698 47336559 . + . gene_id "MER4B_15q21.1c"; transcript_id "MER4B_15q21.1c"; locus "MER4B_15q21.1c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0384"; model_cov "1875"; model_pct "27.7"; chr15 rmsk exon 47334698 47336559 8347 + . gene_id "MER4B_15q21.1c"; transcript_id "MER4B_15q21.1c"; locus "MER4B_15q21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0384"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "-1799"; repStart "3084"; ### HERVL18_15q21.1 ### chr15 rmsk gene 48050587 48051547 . - . gene_id "HERVL18_15q21.1"; transcript_id "HERVL18_15q21.1"; locus "HERVL18_15q21.1"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0131"; model_cov "686"; model_pct "11.3"; chr15 rmsk exon 48050587 48050900 1220 - . gene_id "HERVL18_15q21.1"; transcript_id "HERVL18_15q21.1"; locus "HERVL18_15q21.1"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0131"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "1"; repStart "-17"; chr15 rmsk exon 48050902 48051547 3941 - . gene_id "HERVL18_15q21.1"; transcript_id "HERVL18_15q21.1"; locus "HERVL18_15q21.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0131"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5361"; repStart "0"; ### ERV316A3_15q21.2a ### chr15 rmsk gene 49650523 49652924 . + . gene_id "ERV316A3_15q21.2a"; transcript_id "ERV316A3_15q21.2a"; locus "ERV316A3_15q21.2a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2378"; model_cov "1543"; model_pct "29.5"; chr15 rmsk exon 49650523 49650899 581 + . gene_id "ERV316A3_15q21.2a"; transcript_id "ERV316A3_15q21.2a"; locus "ERV316A3_15q21.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2378"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chr15 rmsk exon 49651213 49652770 3219 + . gene_id "ERV316A3_15q21.2a"; transcript_id "ERV316A3_15q21.2a"; locus "ERV316A3_15q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2378"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "3682"; chr15 rmsk exon 49652772 49652924 423 + . gene_id "ERV316A3_15q21.2a"; transcript_id "ERV316A3_15q21.2a"; locus "ERV316A3_15q21.2a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2378"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "-285"; repStart "-28"; ### HERVH_15q21.2 ### chr15 rmsk gene 49698524 49704756 . - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1054"; model_cov "5597"; model_pct "72.6"; chr15 rmsk exon 49698524 49698929 2757 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chr15 rmsk exon 49698930 49700055 7320 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6551"; repStart "0"; chr15 rmsk exon 49700045 49700653 4159 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr15 rmsk exon 49700650 49700829 1180 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chr15 rmsk exon 49700832 49701334 3162 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr15 rmsk exon 49701325 49701474 918 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr15 rmsk exon 49701454 49704342 14854 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr15 rmsk exon 49704345 49704756 2983 - . gene_id "HERVH_15q21.2"; transcript_id "HERVH_15q21.2"; locus "HERVH_15q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1054"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML5_15q21.2 ### chr15 rmsk gene 49839371 49844779 . + . gene_id "HML5_15q21.2"; transcript_id "HML5_15q21.2"; locus "HML5_15q21.2"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0104"; model_cov "5117"; model_pct "74.8"; chr15 rmsk exon 49839371 49844484 36004 + . gene_id "HML5_15q21.2"; transcript_id "HML5_15q21.2"; locus "HML5_15q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0104"; repClass "LTR"; repEnd "5458"; repFamily "ERVK"; repLeft "-1379"; repStart "341"; chr15 rmsk exon 49844487 49844779 1412 + . gene_id "HML5_15q21.2"; transcript_id "HML5_15q21.2"; locus "HML5_15q21.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0104"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "172"; ### MER101_15q21.2a ### chr15 rmsk gene 50149654 50151548 . - . gene_id "MER101_15q21.2a"; transcript_id "MER101_15q21.2a"; locus "MER101_15q21.2a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0336"; model_cov "1456"; model_pct "21.9"; chr15 rmsk exon 50149654 50149818 2218 - . gene_id "MER101_15q21.2a"; transcript_id "MER101_15q21.2a"; locus "MER101_15q21.2a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0336"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "279"; repStart "0"; chr15 rmsk exon 50150115 50150410 2218 - . gene_id "MER101_15q21.2a"; transcript_id "MER101_15q21.2a"; locus "MER101_15q21.2a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0336"; repClass "LTR"; repEnd "278"; repFamily "ERV1"; repLeft "1"; repStart "-167"; chr15 rmsk exon 50150412 50150885 1781 - . gene_id "MER101_15q21.2a"; transcript_id "MER101_15q21.2a"; locus "MER101_15q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0336"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6165"; repStart "0"; chr15 rmsk exon 50150881 50151548 2085 - . gene_id "MER101_15q21.2a"; transcript_id "MER101_15q21.2a"; locus "MER101_15q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0336"; repClass "LTR"; repEnd "4586"; repFamily "ERV1"; repLeft "3604"; repStart "-2053"; ### MER101_15q21.2b ### chr15 rmsk gene 50151774 50154622 . - . gene_id "MER101_15q21.2b"; transcript_id "MER101_15q21.2b"; locus "MER101_15q21.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0337"; model_cov "2442"; model_pct "36.8"; chr15 rmsk exon 50151774 50153342 4507 - . gene_id "MER101_15q21.2b"; transcript_id "MER101_15q21.2b"; locus "MER101_15q21.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0337"; repClass "LTR"; repEnd "5276"; repFamily "ERV1"; repLeft "4062"; repStart "-1363"; chr15 rmsk exon 50153791 50154622 2275 - . gene_id "MER101_15q21.2b"; transcript_id "MER101_15q21.2b"; locus "MER101_15q21.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0337"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "1534"; repStart "-3877"; ### MER41_15q21.2a ### chr15 rmsk gene 50667719 50670796 . + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0460"; model_cov "1885"; model_pct "31.7"; chr15 rmsk exon 50667719 50667748 335 + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0460"; repClass "LTR"; repEnd "2719"; repFamily "ERV1"; repLeft "-3227"; repStart "2689"; chr15 rmsk exon 50667744 50668500 12048 + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0460"; repClass "LTR"; repEnd "4797"; repFamily "ERV1"; repLeft "-1149"; repStart "4087"; chr15 rmsk exon 50668808 50669159 12048 + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0460"; repClass "LTR"; repEnd "5119"; repFamily "ERV1"; repLeft "-827"; repStart "4798"; chr15 rmsk exon 50669457 50670248 12048 + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0460"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5120"; chr15 rmsk exon 50670250 50670796 3848 + . gene_id "MER41_15q21.2a"; transcript_id "MER41_15q21.2a"; locus "MER41_15q21.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0460"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "-81"; repStart "2"; ### MER4B_15q21.2 ### chr15 rmsk gene 50870443 50875773 . - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0385"; model_cov "3776"; model_pct "55.9"; chr15 rmsk exon 50870443 50871218 1597 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "3499"; repFamily "ERV1"; repLeft "2724"; repStart "-3259"; chr15 rmsk exon 50871394 50873284 2762 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "2548"; repFamily "ERV1"; repLeft "631"; repStart "-4210"; chr15 rmsk exon 50873614 50873887 390 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "-195"; repFamily "ERV1"; repLeft "-469"; repStart "-6953"; chr15 rmsk exon 50873858 50874704 4967 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "811"; repFamily "ERV1"; repLeft "1"; repStart "-5947"; chr15 rmsk exon 50874705 50875048 5568 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "432"; repStart "0"; chr15 rmsk exon 50875361 50875773 5568 - . gene_id "MER4B_15q21.2"; transcript_id "MER4B_15q21.2"; locus "MER4B_15q21.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0385"; repClass "LTR"; repEnd "431"; repFamily "ERV1"; repLeft "1"; repStart "-335"; ### HML1_15q21.2 ### chr15 rmsk gene 51282244 51285924 . + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0100"; model_cov "2801"; model_pct "45.9"; chr15 rmsk exon 51282244 51282688 2580 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr15 rmsk exon 51282689 51283461 6243 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "780"; repFamily "ERVK"; repLeft "-5316"; repStart "1"; chr15 rmsk exon 51283487 51284619 8916 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "2527"; repFamily "ERVK"; repLeft "-3569"; repStart "1383"; chr15 rmsk exon 51284604 51285034 3255 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "5314"; repFamily "ERVK"; repLeft "-782"; repStart "4845"; chr15 rmsk exon 51285046 51285292 1746 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "5902"; repFamily "ERVK"; repLeft "-194"; repStart "5612"; chr15 rmsk exon 51285363 51285480 647 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "6092"; repFamily "ERVK"; repLeft "-4"; repStart "5973"; chr15 rmsk exon 51285488 51285924 2420 + . gene_id "HML1_15q21.2"; transcript_id "HML1_15q21.2"; locus "HML1_15q21.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0100"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVW_15q21.2 ### chr15 rmsk gene 51357366 51360808 . + . gene_id "HERVW_15q21.2"; transcript_id "HERVW_15q21.2"; locus "HERVW_15q21.2"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0258"; model_cov "3735"; model_pct "43.3"; chr15 rmsk exon 51357366 51359695 11634 + . gene_id "HERVW_15q21.2"; transcript_id "HERVW_15q21.2"; locus "HERVW_15q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0258"; repClass "LTR"; repEnd "2935"; repFamily "ERV1"; repLeft "-5691"; repStart "1"; chr15 rmsk exon 51360003 51360808 11634 + . gene_id "HERVW_15q21.2"; transcript_id "HERVW_15q21.2"; locus "HERVW_15q21.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0258"; repClass "LTR"; repEnd "3737"; repFamily "ERV1"; repLeft "-4889"; repStart "2936"; ### MER4_15q21.2a ### chr15 rmsk gene 51416001 51417137 . - . gene_id "MER4_15q21.2a"; transcript_id "MER4_15q21.2a"; locus "MER4_15q21.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0694"; model_cov "702"; model_pct "10.6"; chr15 rmsk exon 51416001 51416465 3073 - . gene_id "MER4_15q21.2a"; transcript_id "MER4_15q21.2a"; locus "MER4_15q21.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0694"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 51416468 51417137 4079 - . gene_id "MER4_15q21.2a"; transcript_id "MER4_15q21.2a"; locus "MER4_15q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0694"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5896"; repStart "0"; ### MER4_15q21.2b ### chr15 rmsk gene 51423247 51425731 . - . gene_id "MER4_15q21.2b"; transcript_id "MER4_15q21.2b"; locus "MER4_15q21.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0695"; model_cov "3866"; model_pct "58.6"; chr15 rmsk exon 51423247 51425731 11360 - . gene_id "MER4_15q21.2b"; transcript_id "MER4_15q21.2b"; locus "MER4_15q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0695"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "2046"; repStart "-686"; ### MER4_15q21.2c ### chr15 rmsk gene 51425967 51428632 . - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0696"; model_cov "2806"; model_pct "42.5"; chr15 rmsk exon 51425967 51426697 11360 - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0696"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "4772"; repStart "-686"; chr15 rmsk exon 51427030 51427552 9839 - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0696"; repClass "LTR"; repEnd "1710"; repFamily "ERV1"; repLeft "697"; repStart "-4888"; chr15 rmsk exon 51427596 51427812 7650 - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0696"; repClass "LTR"; repEnd "1115"; repFamily "ERV1"; repLeft "897"; repStart "-5483"; chr15 rmsk exon 51427812 51428248 2663 - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0696"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "1"; repStart "-6162"; chr15 rmsk exon 51428252 51428632 2955 - . gene_id "MER4_15q21.2c"; transcript_id "MER4_15q21.2c"; locus "MER4_15q21.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0696"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "92"; repStart "0"; ### MER41_15q21.2b ### chr15 rmsk gene 51634545 51637646 . - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0461"; model_cov "2141"; model_pct "36.0"; chr15 rmsk exon 51634545 51635069 3487 - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0461"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "5"; repStart "-88"; chr15 rmsk exon 51635073 51635601 3682 - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0461"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5403"; repStart "0"; chr15 rmsk exon 51635599 51637181 10262 - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0461"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "1"; repStart "-4347"; chr15 rmsk exon 51637182 51637305 925 - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0461"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "511"; repStart "0"; chr15 rmsk exon 51637606 51637646 925 - . gene_id "MER41_15q21.2b"; transcript_id "MER41_15q21.2b"; locus "MER41_15q21.2b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0461"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "481"; repStart "-124"; ### ERVLB4_15q21.2 ### chr15 rmsk gene 51933185 51935644 . - . gene_id "ERVLB4_15q21.2"; transcript_id "ERVLB4_15q21.2"; locus "ERVLB4_15q21.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1518"; model_cov "1427"; model_pct "25.0"; chr15 rmsk exon 51933185 51933420 2258 - . gene_id "ERVLB4_15q21.2"; transcript_id "ERVLB4_15q21.2"; locus "ERVLB4_15q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1518"; repClass "LTR"; repEnd "3565"; repFamily "ERVL"; repLeft "3301"; repStart "-2149"; chr15 rmsk exon 51933725 51934385 2258 - . gene_id "ERVLB4_15q21.2"; transcript_id "ERVLB4_15q21.2"; locus "ERVLB4_15q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1518"; repClass "LTR"; repEnd "3300"; repFamily "ERVL"; repLeft "2613"; repStart "-2414"; chr15 rmsk exon 51935182 51935644 1739 - . gene_id "ERVLB4_15q21.2"; transcript_id "ERVLB4_15q21.2"; locus "ERVLB4_15q21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1518"; repClass "LTR"; repEnd "2345"; repFamily "ERVL"; repLeft "1869"; repStart "-3369"; ### ERV316A3_15q21.2b ### chr15 rmsk gene 51995047 51996386 . - . gene_id "ERV316A3_15q21.2b"; transcript_id "ERV316A3_15q21.2b"; locus "ERV316A3_15q21.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2379"; model_cov "590"; model_pct "11.3"; chr15 rmsk exon 51995047 51995468 1342 - . gene_id "ERV316A3_15q21.2b"; transcript_id "ERV316A3_15q21.2b"; locus "ERV316A3_15q21.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2379"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "6"; repStart "-2"; chr15 rmsk exon 51995471 51995645 1752 - . gene_id "ERV316A3_15q21.2b"; transcript_id "ERV316A3_15q21.2b"; locus "ERV316A3_15q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2379"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "5044"; repStart "-8"; chr15 rmsk exon 51995956 51996386 1752 - . gene_id "ERV316A3_15q21.2b"; transcript_id "ERV316A3_15q21.2b"; locus "ERV316A3_15q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2379"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "4627"; repStart "-183"; ### ERVLE_15q21.2 ### chr15 rmsk gene 52113318 52114980 . + . gene_id "ERVLE_15q21.2"; transcript_id "ERVLE_15q21.2"; locus "ERVLE_15q21.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3137"; model_cov "1451"; model_pct "25.6"; chr15 rmsk exon 52113318 52113430 531 + . gene_id "ERVLE_15q21.2"; transcript_id "ERVLE_15q21.2"; locus "ERVLE_15q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3137"; repClass "LTR"; repEnd "2895"; repFamily "ERVL"; repLeft "-2772"; repStart "2681"; chr15 rmsk exon 52113787 52113847 287 + . gene_id "ERVLE_15q21.2"; transcript_id "ERVLE_15q21.2"; locus "ERVLE_15q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3137"; repClass "LTR"; repEnd "2967"; repFamily "ERVL"; repLeft "-2700"; repStart "2903"; chr15 rmsk exon 52113860 52114980 5065 + . gene_id "ERVLE_15q21.2"; transcript_id "ERVLE_15q21.2"; locus "ERVLE_15q21.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3137"; repClass "LTR"; repEnd "4170"; repFamily "ERVL"; repLeft "-1497"; repStart "2997"; ### HERVH_15q21.3a ### chr15 rmsk gene 52738558 52745204 . + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1055"; model_cov "5758"; model_pct "74.7"; chr15 rmsk exon 52738558 52738987 2612 + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1055"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 52738990 52744189 36345 + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1055"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr15 rmsk exon 52744191 52744407 1389 + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1055"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 52744406 52744783 2387 + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1055"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr15 rmsk exon 52744784 52745204 2705 + . gene_id "HERVH_15q21.3a"; transcript_id "HERVH_15q21.3a"; locus "HERVH_15q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1055"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_15q21.3a ### chr15 rmsk gene 53367056 53367823 . - . gene_id "ERVLE_15q21.3a"; transcript_id "ERVLE_15q21.3a"; locus "ERVLE_15q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3138"; model_cov "858"; model_pct "15.1"; chr15 rmsk exon 53367056 53367823 2139 - . gene_id "ERVLE_15q21.3a"; transcript_id "ERVLE_15q21.3a"; locus "ERVLE_15q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3138"; repClass "LTR"; repEnd "2009"; repFamily "ERVL"; repLeft "1151"; repStart "-3658"; ### ERVLE_15q21.3b ### chr15 rmsk gene 53406381 53407798 . + . gene_id "ERVLE_15q21.3b"; transcript_id "ERVLE_15q21.3b"; locus "ERVLE_15q21.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3139"; model_cov "862"; model_pct "15.2"; chr15 rmsk exon 53406381 53406631 839 + . gene_id "ERVLE_15q21.3b"; transcript_id "ERVLE_15q21.3b"; locus "ERVLE_15q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3139"; repClass "LTR"; repEnd "1781"; repFamily "ERVL"; repLeft "-3886"; repStart "1520"; chr15 rmsk exon 53406643 53407208 2286 + . gene_id "ERVLE_15q21.3b"; transcript_id "ERVLE_15q21.3b"; locus "ERVLE_15q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3139"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-15"; repStart "5051"; chr15 rmsk exon 53407222 53407798 1559 + . gene_id "ERVLE_15q21.3b"; transcript_id "ERVLE_15q21.3b"; locus "ERVLE_15q21.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3139"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_15q21.3b ### chr15 rmsk gene 53426844 53432463 . - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1056"; model_cov "4688"; model_pct "60.8"; chr15 rmsk exon 53426844 53427278 2960 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 53427279 53427872 2496 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr15 rmsk exon 53427874 53428534 4401 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr15 rmsk exon 53428537 53429036 3344 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr15 rmsk exon 53429027 53429173 897 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3141"; repStart "-4423"; chr15 rmsk exon 53429169 53432029 16264 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr15 rmsk exon 53432030 53432463 2991 - . gene_id "HERVH_15q21.3b"; transcript_id "HERVH_15q21.3b"; locus "HERVH_15q21.3b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1056"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_15q21.3 ### chr15 rmsk gene 53822858 53826115 . - . gene_id "MER4_15q21.3"; transcript_id "MER4_15q21.3"; locus "MER4_15q21.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0697"; model_cov "2917"; model_pct "44.2"; chr15 rmsk exon 53822858 53823306 3326 - . gene_id "MER4_15q21.3"; transcript_id "MER4_15q21.3"; locus "MER4_15q21.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0697"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr15 rmsk exon 53823315 53825970 16456 - . gene_id "MER4_15q21.3"; transcript_id "MER4_15q21.3"; locus "MER4_15q21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0697"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3837"; repStart "-2"; chr15 rmsk exon 53825953 53826115 607 - . gene_id "MER4_15q21.3"; transcript_id "MER4_15q21.3"; locus "MER4_15q21.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0697"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "3535"; repStart "-2905"; ### HERVL18_15q21.3 ### chr15 rmsk gene 53910296 53914772 . + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0132"; model_cov "3239"; model_pct "53.6"; chr15 rmsk exon 53910296 53910869 3423 + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0132"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr15 rmsk exon 53910905 53913193 8733 + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0132"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "4"; chr15 rmsk exon 53913193 53913434 1448 + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0132"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "-3086"; repStart "2720"; chr15 rmsk exon 53913471 53914020 2970 + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0132"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2941"; chr15 rmsk exon 53914209 53914772 3177 + . gene_id "HERVL18_15q21.3"; transcript_id "HERVL18_15q21.3"; locus "HERVL18_15q21.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0132"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-27"; repStart "1"; ### ERV316A3_15q21.3a ### chr15 rmsk gene 53990838 53993502 . - . gene_id "ERV316A3_15q21.3a"; transcript_id "ERV316A3_15q21.3a"; locus "ERV316A3_15q21.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2380"; model_cov "2270"; model_pct "43.4"; chr15 rmsk exon 53990838 53991556 1048 - . gene_id "ERV316A3_15q21.3a"; transcript_id "ERV316A3_15q21.3a"; locus "ERV316A3_15q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2380"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "3978"; repStart "-520"; chr15 rmsk exon 53991540 53993065 2369 - . gene_id "ERV316A3_15q21.3a"; transcript_id "ERV316A3_15q21.3a"; locus "ERV316A3_15q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2380"; repClass "LTR"; repEnd "1618"; repFamily "ERVL"; repLeft "76"; repStart "-3608"; chr15 rmsk exon 53993198 53993502 698 - . gene_id "ERV316A3_15q21.3a"; transcript_id "ERV316A3_15q21.3a"; locus "ERV316A3_15q21.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2380"; repClass "LTR"; repEnd "337"; repFamily "ERVL"; repLeft "11"; repStart "-101"; ### ERV316A3_15q21.3b ### chr15 rmsk gene 54774650 54776237 . + . gene_id "ERV316A3_15q21.3b"; transcript_id "ERV316A3_15q21.3b"; locus "ERV316A3_15q21.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2381"; model_cov "1159"; model_pct "22.2"; chr15 rmsk exon 54774650 54774805 268 + . gene_id "ERV316A3_15q21.3b"; transcript_id "ERV316A3_15q21.3b"; locus "ERV316A3_15q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2381"; repClass "LTR"; repEnd "3786"; repFamily "ERVL"; repLeft "-1440"; repStart "3626"; chr15 rmsk exon 54774838 54775830 1070 + . gene_id "ERV316A3_15q21.3b"; transcript_id "ERV316A3_15q21.3b"; locus "ERV316A3_15q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2381"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "-31"; repStart "4196"; chr15 rmsk exon 54775957 54776237 835 + . gene_id "ERV316A3_15q21.3b"; transcript_id "ERV316A3_15q21.3b"; locus "ERV316A3_15q21.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2381"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "157"; ### HML5_15q21.3 ### chr15 rmsk gene 54886807 54891573 . + . gene_id "HML5_15q21.3"; transcript_id "HML5_15q21.3"; locus "HML5_15q21.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0105"; model_cov "5308"; model_pct "77.6"; chr15 rmsk exon 54886807 54887279 2512 + . gene_id "HML5_15q21.3"; transcript_id "HML5_15q21.3"; locus "HML5_15q21.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0105"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr15 rmsk exon 54887280 54888016 4447 + . gene_id "HML5_15q21.3"; transcript_id "HML5_15q21.3"; locus "HML5_15q21.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0105"; repClass "LTR"; repEnd "786"; repFamily "ERVK"; repLeft "-6051"; repStart "1"; chr15 rmsk exon 54888010 54891167 20680 + . gene_id "HML5_15q21.3"; transcript_id "HML5_15q21.3"; locus "HML5_15q21.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0105"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2314"; chr15 rmsk exon 54891168 54891573 1605 + . gene_id "HML5_15q21.3"; transcript_id "HML5_15q21.3"; locus "HML5_15q21.3"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0105"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVW_15q21.3 ### chr15 rmsk gene 55304882 55312376 . - . gene_id "HERVW_15q21.3"; transcript_id "HERVW_15q21.3"; locus "HERVW_15q21.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0259"; model_cov "6709"; model_pct "77.8"; chr15 rmsk exon 55304882 55305207 2723 - . gene_id "HERVW_15q21.3"; transcript_id "HERVW_15q21.3"; locus "HERVW_15q21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0259"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr15 rmsk exon 55305210 55311846 57073 - . gene_id "HERVW_15q21.3"; transcript_id "HERVW_15q21.3"; locus "HERVW_15q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0259"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "1953"; repStart "-5"; chr15 rmsk exon 55311835 55311876 259 - . gene_id "HERVW_15q21.3"; transcript_id "HERVW_15q21.3"; locus "HERVW_15q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0259"; repClass "LTR"; repEnd "43"; repFamily "ERV1"; repLeft "2"; repStart "-8583"; chr15 rmsk exon 55311877 55312376 3965 - . gene_id "HERVW_15q21.3"; transcript_id "HERVW_15q21.3"; locus "HERVW_15q21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0259"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERV4_15q21.3 ### chr15 rmsk gene 55477977 55482210 . + . gene_id "HERV4_15q21.3"; transcript_id "HERV4_15q21.3"; locus "HERV4_15q21.3"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0113"; model_cov "1372"; model_pct "21.0"; chr15 rmsk exon 55477977 55478582 3608 + . gene_id "HERV4_15q21.3"; transcript_id "HERV4_15q21.3"; locus "HERV4_15q21.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0113"; repClass "LTR"; repEnd "3044"; repFamily "ERV1"; repLeft "-3495"; repStart "2434"; chr15 rmsk exon 55480342 55480835 1123 + . gene_id "HERV4_15q21.3"; transcript_id "HERV4_15q21.3"; locus "HERV4_15q21.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0113"; repClass "LTR"; repEnd "6024"; repFamily "ERV1"; repLeft "-515"; repStart "5536"; chr15 rmsk exon 55481197 55481726 1809 + . gene_id "HERV4_15q21.3"; transcript_id "HERV4_15q21.3"; locus "HERV4_15q21.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0113"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "-2"; repStart "6263"; chr15 rmsk exon 55481728 55482210 1762 + . gene_id "HERV4_15q21.3"; transcript_id "HERV4_15q21.3"; locus "HERV4_15q21.3"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0113"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "0"; repStart "-174"; ### HERVEA_15q21.3 ### chr15 rmsk gene 55510695 55516311 . - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0078"; model_cov "4807"; model_pct "61.3"; chr15 rmsk exon 55510695 55511158 3345 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 55511159 55511685 13917 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "7334"; repStart "0"; chr15 rmsk exon 55511997 55513287 13917 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "7333"; repFamily "ERV1"; repLeft "6040"; repStart "-514"; chr15 rmsk exon 55513286 55513409 956 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "5090"; repFamily "ERV1"; repLeft "4968"; repStart "-2757"; chr15 rmsk exon 55513406 55516274 22441 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "6030"; repFamily "ERV1"; repLeft "3151"; repStart "-1817"; chr15 rmsk exon 55516275 55516311 295 - . gene_id "HERVEA_15q21.3"; transcript_id "HERVEA_15q21.3"; locus "HERVEA_15q21.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0078"; repClass "LTR"; repEnd "37"; repFamily "ERV1"; repLeft "1"; repStart "-426"; ### ERV316A3_15q21.3c ### chr15 rmsk gene 56291715 56293042 . + . gene_id "ERV316A3_15q21.3c"; transcript_id "ERV316A3_15q21.3c"; locus "ERV316A3_15q21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2382"; model_cov "931"; model_pct "17.8"; chr15 rmsk exon 56291715 56292618 1437 + . gene_id "ERV316A3_15q21.3c"; transcript_id "ERV316A3_15q21.3c"; locus "ERV316A3_15q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2382"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "-178"; repStart "4117"; chr15 rmsk exon 56292619 56293042 1415 + . gene_id "ERV316A3_15q21.3c"; transcript_id "ERV316A3_15q21.3c"; locus "ERV316A3_15q21.3c"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2382"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "48"; ### ERV316A3_15q21.3d ### chr15 rmsk gene 56336612 56338505 . - . gene_id "ERV316A3_15q21.3d"; transcript_id "ERV316A3_15q21.3d"; locus "ERV316A3_15q21.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2383"; model_cov "929"; model_pct "17.8"; chr15 rmsk exon 56336612 56337009 1406 - . gene_id "ERV316A3_15q21.3d"; transcript_id "ERV316A3_15q21.3d"; locus "ERV316A3_15q21.3d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2383"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "1"; repStart "-25"; chr15 rmsk exon 56337010 56337396 1921 - . gene_id "ERV316A3_15q21.3d"; transcript_id "ERV316A3_15q21.3d"; locus "ERV316A3_15q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2383"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4857"; repStart "0"; chr15 rmsk exon 56337949 56338505 1921 - . gene_id "ERV316A3_15q21.3d"; transcript_id "ERV316A3_15q21.3d"; locus "ERV316A3_15q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2383"; repClass "LTR"; repEnd "4856"; repFamily "ERVL"; repLeft "4296"; repStart "-370"; ### ERVLB4_15q21.3 ### chr15 rmsk gene 56338572 56341097 . - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1519"; model_cov "1635"; model_pct "28.6"; chr15 rmsk exon 56338572 56338634 1687 - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1519"; repClass "LTR"; repEnd "2914"; repFamily "ERVL"; repLeft "2855"; repStart "-2800"; chr15 rmsk exon 56338927 56339100 1687 - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1519"; repClass "LTR"; repEnd "2854"; repFamily "ERVL"; repLeft "2638"; repStart "-2860"; chr15 rmsk exon 56339413 56339655 1687 - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1519"; repClass "LTR"; repEnd "2637"; repFamily "ERVL"; repLeft "2394"; repStart "-3077"; chr15 rmsk exon 56339997 56340439 1687 - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1519"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "1925"; repStart "-3321"; chr15 rmsk exon 56340479 56341097 1041 - . gene_id "ERVLB4_15q21.3"; transcript_id "ERVLB4_15q21.3"; locus "ERVLB4_15q21.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1519"; repClass "LTR"; repEnd "1828"; repFamily "ERVL"; repLeft "1179"; repStart "-3886"; ### HERVL40_15q21.3 ### chr15 rmsk gene 57013977 57017165 . + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; category "unknown"; intModel "HERVL40-int"; locid "HERVL40-int_0383"; model_cov "1236"; model_pct "22.4"; chr15 rmsk exon 57013977 57014862 3076 + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0383"; repClass "LTR"; repEnd "4431"; repFamily "ERVL"; repLeft "-1099"; repStart "3517"; chr15 rmsk exon 57014917 57014977 3076 + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0383"; repClass "LTR"; repEnd "4501"; repFamily "ERVL"; repLeft "-1029"; repStart "4432"; chr15 rmsk exon 57015550 57015609 232 + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0383"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-7"; repStart "400"; chr15 rmsk exon 57016325 57016670 1219 + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0383"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5277"; chr15 rmsk exon 57016671 57017165 2301 + . gene_id "HERVL40_15q21.3"; transcript_id "HERVL40_15q21.3"; locus "HERVL40_15q21.3"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0383"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### HERVL_15q21.3 ### chr15 rmsk gene 58207347 58210949 . + . gene_id "HERVL_15q21.3"; transcript_id "HERVL_15q21.3"; locus "HERVL_15q21.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1121"; model_cov "4241"; model_pct "75.0"; chr15 rmsk exon 58207347 58207524 1385 + . gene_id "HERVL_15q21.3"; transcript_id "HERVL_15q21.3"; locus "HERVL_15q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1121"; repClass "LTR"; repEnd "178"; repFamily "ERVL"; repLeft "-5476"; repStart "1"; chr15 rmsk exon 58207502 58210595 16525 + . gene_id "HERVL_15q21.3"; transcript_id "HERVL_15q21.3"; locus "HERVL_15q21.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1121"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1590"; chr15 rmsk exon 58210596 58210949 2721 + . gene_id "HERVL_15q21.3"; transcript_id "HERVL_15q21.3"; locus "HERVL_15q21.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1121"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "-89"; repStart "1"; ### ERVLE_15q22.2a ### chr15 rmsk gene 59505859 59506861 . - . gene_id "ERVLE_15q22.2a"; transcript_id "ERVLE_15q22.2a"; locus "ERVLE_15q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3141"; model_cov "1017"; model_pct "17.9"; chr15 rmsk exon 59505859 59506143 699 - . gene_id "ERVLE_15q22.2a"; transcript_id "ERVLE_15q22.2a"; locus "ERVLE_15q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3141"; repClass "LTR"; repEnd "3865"; repFamily "ERVL"; repLeft "3468"; repStart "-1802"; chr15 rmsk exon 59506303 59506861 1744 - . gene_id "ERVLE_15q22.2a"; transcript_id "ERVLE_15q22.2a"; locus "ERVLE_15q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3141"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "2906"; repStart "-2141"; ### ERVLE_15q22.2b ### chr15 rmsk gene 61366631 61370377 . + . gene_id "ERVLE_15q22.2b"; transcript_id "ERVLE_15q22.2b"; locus "ERVLE_15q22.2b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3142"; model_cov "2929"; model_pct "51.7"; chr15 rmsk exon 61366631 61367916 2784 + . gene_id "ERVLE_15q22.2b"; transcript_id "ERVLE_15q22.2b"; locus "ERVLE_15q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3142"; repClass "LTR"; repEnd "3115"; repFamily "ERVL"; repLeft "-2552"; repStart "1686"; chr15 rmsk exon 61367903 61369367 5976 + . gene_id "ERVLE_15q22.2b"; transcript_id "ERVLE_15q22.2b"; locus "ERVLE_15q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3142"; repClass "LTR"; repEnd "5465"; repFamily "ERVL"; repLeft "-202"; repStart "3965"; chr15 rmsk exon 61369911 61370377 1440 + . gene_id "ERVLE_15q22.2b"; transcript_id "ERVLE_15q22.2b"; locus "ERVLE_15q22.2b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3142"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "181"; ### ERVLE_15q22.2c ### chr15 rmsk gene 61788526 61789522 . + . gene_id "ERVLE_15q22.2c"; transcript_id "ERVLE_15q22.2c"; locus "ERVLE_15q22.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3143"; model_cov "1105"; model_pct "19.5"; chr15 rmsk exon 61788526 61789522 1325 + . gene_id "ERVLE_15q22.2c"; transcript_id "ERVLE_15q22.2c"; locus "ERVLE_15q22.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3143"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "-370"; repStart "4192"; ### ERVLE_15q22.2d ### chr15 rmsk gene 62131587 62132199 . + . gene_id "ERVLE_15q22.2d"; transcript_id "ERVLE_15q22.2d"; locus "ERVLE_15q22.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3144"; model_cov "643"; model_pct "11.3"; chr15 rmsk exon 62131587 62132199 1488 + . gene_id "ERVLE_15q22.2d"; transcript_id "ERVLE_15q22.2d"; locus "ERVLE_15q22.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3144"; repClass "LTR"; repEnd "1636"; repFamily "ERVL"; repLeft "-4031"; repStart "993"; ### MER4B_15q22.2a ### chr15 rmsk gene 62207174 62211910 . + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0386"; model_cov "887"; model_pct "13.1"; chr15 rmsk exon 62207174 62207362 1104 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "2618"; repFamily "ERV1"; repLeft "-4140"; repStart "2561"; chr15 rmsk exon 62208447 62208489 1104 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "2655"; repFamily "ERV1"; repLeft "-4103"; repStart "2619"; chr15 rmsk exon 62208790 62209014 1104 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "2873"; repFamily "ERV1"; repLeft "-3885"; repStart "2656"; chr15 rmsk exon 62209693 62209713 1104 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "2885"; repFamily "ERV1"; repLeft "-3873"; repStart "2874"; chr15 rmsk exon 62210205 62210331 1104 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "2937"; repFamily "ERV1"; repLeft "-3821"; repStart "2886"; chr15 rmsk exon 62210940 62211399 2876 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-2078"; repStart "4227"; chr15 rmsk exon 62211848 62211910 435 + . gene_id "MER4B_15q22.2a"; transcript_id "MER4B_15q22.2a"; locus "MER4B_15q22.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0386"; repClass "LTR"; repEnd "4737"; repFamily "ERV1"; repLeft "-2021"; repStart "4675"; ### HML1_15q22.2 ### chr15 rmsk gene 62211914 62217124 . - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0101"; model_cov "3846"; model_pct "63.1"; chr15 rmsk exon 62211914 62211997 389 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "135"; repFamily "ERVK"; repLeft "44"; repStart "-209"; chr15 rmsk exon 62211971 62212124 584 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "112"; repFamily "ERVK"; repLeft "1"; repStart "-232"; chr15 rmsk exon 62212137 62212458 1010 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "6071"; repFamily "ERVK"; repLeft "5749"; repStart "-25"; chr15 rmsk exon 62212510 62212564 496 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "5960"; repStart "-82"; chr15 rmsk exon 62212627 62214081 15402 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "4430"; repStart "-199"; chr15 rmsk exon 62214376 62214830 15402 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "4429"; repFamily "ERVK"; repLeft "3975"; repStart "-1667"; chr15 rmsk exon 62214835 62216200 12050 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "1552"; repFamily "ERVK"; repLeft "186"; repStart "-4544"; chr15 rmsk exon 62216526 62216710 12050 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "185"; repFamily "ERVK"; repLeft "2"; repStart "-5911"; chr15 rmsk exon 62216712 62217124 2231 - . gene_id "HML1_15q22.2"; transcript_id "HML1_15q22.2"; locus "HML1_15q22.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0101"; repClass "LTR"; repEnd "343"; repFamily "ERVK"; repLeft "1"; repStart "-1"; ### MER4B_15q22.2b ### chr15 rmsk gene 62217169 62218454 . + . gene_id "MER4B_15q22.2b"; transcript_id "MER4B_15q22.2b"; locus "MER4B_15q22.2b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0387"; model_cov "884"; model_pct "13.1"; chr15 rmsk exon 62217169 62217899 3089 + . gene_id "MER4B_15q22.2b"; transcript_id "MER4B_15q22.2b"; locus "MER4B_15q22.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0387"; repClass "LTR"; repEnd "5951"; repFamily "ERV1"; repLeft "-807"; repStart "5282"; chr15 rmsk exon 62218245 62218454 758 + . gene_id "MER4B_15q22.2b"; transcript_id "MER4B_15q22.2b"; locus "MER4B_15q22.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0387"; repClass "LTR"; repEnd "6268"; repFamily "ERV1"; repLeft "-490"; repStart "6053"; ### MER41_15q22.31a ### chr15 rmsk gene 65347988 65353892 . + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0463"; model_cov "4838"; model_pct "81.4"; chr15 rmsk exon 65347988 65348376 4273 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0463"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "171"; chr15 rmsk exon 65348463 65350041 5097 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0463"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "-4171"; repStart "3"; chr15 rmsk exon 65350026 65350119 686 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0463"; repClass "LTR"; repEnd "1726"; repFamily "ERV1"; repLeft "-4220"; repStart "1633"; chr15 rmsk exon 65350765 65351254 10600 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0463"; repClass "LTR"; repEnd "4125"; repFamily "ERV1"; repLeft "-1821"; repStart "3647"; chr15 rmsk exon 65351553 65353190 10711 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0463"; repClass "LTR"; repEnd "5690"; repFamily "ERV1"; repLeft "-256"; repStart "3195"; chr15 rmsk exon 65353551 65353892 3162 + . gene_id "MER41_15q22.31a"; transcript_id "MER41_15q22.31a"; locus "MER41_15q22.31a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0463"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-130"; repStart "84"; ### MER41_15q22.31b ### chr15 rmsk gene 66464103 66466989 . - . gene_id "MER41_15q22.31b"; transcript_id "MER41_15q22.31b"; locus "MER41_15q22.31b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0464"; model_cov "1485"; model_pct "25.0"; chr15 rmsk exon 66464103 66464519 4790 - . gene_id "MER41_15q22.31b"; transcript_id "MER41_15q22.31b"; locus "MER41_15q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0464"; repClass "LTR"; repEnd "5494"; repFamily "ERV1"; repLeft "5327"; repStart "-452"; chr15 rmsk exon 66464827 66464941 4790 - . gene_id "MER41_15q22.31b"; transcript_id "MER41_15q22.31b"; locus "MER41_15q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0464"; repClass "LTR"; repEnd "5326"; repFamily "ERV1"; repLeft "5219"; repStart "-620"; chr15 rmsk exon 66465708 66466396 6580 - . gene_id "MER41_15q22.31b"; transcript_id "MER41_15q22.31b"; locus "MER41_15q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0464"; repClass "LTR"; repEnd "5218"; repFamily "ERV1"; repLeft "4303"; repStart "-728"; chr15 rmsk exon 66466695 66466989 6580 - . gene_id "MER41_15q22.31b"; transcript_id "MER41_15q22.31b"; locus "MER41_15q22.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0464"; repClass "LTR"; repEnd "4687"; repFamily "ERV1"; repLeft "4391"; repStart "-1259"; ### MER4_15q22.31a ### chr15 rmsk gene 66467490 66468975 . - . gene_id "MER4_15q22.31a"; transcript_id "MER4_15q22.31a"; locus "MER4_15q22.31a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0699"; model_cov "891"; model_pct "13.5"; chr15 rmsk exon 66467490 66467569 6592 - . gene_id "MER4_15q22.31a"; transcript_id "MER4_15q22.31a"; locus "MER4_15q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0699"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "2429"; repStart "-4104"; chr15 rmsk exon 66467859 66468650 6592 - . gene_id "MER4_15q22.31a"; transcript_id "MER4_15q22.31a"; locus "MER4_15q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0699"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "1602"; repStart "-4170"; chr15 rmsk exon 66468965 66468975 6592 - . gene_id "MER4_15q22.31a"; transcript_id "MER4_15q22.31a"; locus "MER4_15q22.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0699"; repClass "LTR"; repEnd "1601"; repFamily "ERV1"; repLeft "1601"; repStart "-4997"; ### MER4_15q22.31b ### chr15 rmsk gene 66469265 66471200 . - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0700"; model_cov "1544"; model_pct "23.4"; chr15 rmsk exon 66469265 66469472 6592 - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0700"; repClass "LTR"; repEnd "1601"; repFamily "ERV1"; repLeft "1378"; repStart "-4997"; chr15 rmsk exon 66469500 66469693 6592 - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0700"; repClass "LTR"; repEnd "1377"; repFamily "ERV1"; repLeft "1163"; repStart "-5221"; chr15 rmsk exon 66469725 66470082 2349 - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0700"; repClass "LTR"; repEnd "1109"; repFamily "ERV1"; repLeft "743"; repStart "-5489"; chr15 rmsk exon 66470119 66470754 2639 - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0700"; repClass "LTR"; repEnd "742"; repFamily "ERV1"; repLeft "1"; repStart "-5856"; chr15 rmsk exon 66470758 66471200 3296 - . gene_id "MER4_15q22.31b"; transcript_id "MER4_15q22.31b"; locus "MER4_15q22.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0700"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_15q22.31 ### chr15 rmsk gene 66790919 66795741 . + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0384"; model_cov "2541"; model_pct "45.9"; chr15 rmsk exon 66790919 66791337 1586 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "7"; chr15 rmsk exon 66791339 66791429 464 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "-5435"; repStart "1"; chr15 rmsk exon 66791736 66792209 1528 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "-4962"; repStart "108"; chr15 rmsk exon 66792282 66792395 2520 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "662"; repFamily "ERVL"; repLeft "-4868"; repStart "564"; chr15 rmsk exon 66792694 66793061 2520 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "-4506"; repStart "663"; chr15 rmsk exon 66793461 66793659 2520 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "1225"; repFamily "ERVL"; repLeft "-4305"; repStart "1025"; chr15 rmsk exon 66793952 66794315 2520 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "-3922"; repStart "1226"; chr15 rmsk exon 66794318 66794413 391 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "2613"; repFamily "ERVL"; repLeft "-2917"; repStart "2522"; chr15 rmsk exon 66794433 66794659 1018 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "2914"; repFamily "ERVL"; repLeft "-2616"; repStart "2685"; chr15 rmsk exon 66794687 66794980 1347 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "4138"; repFamily "ERVL"; repLeft "-1392"; repStart "3840"; chr15 rmsk exon 66795264 66795376 1347 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "4257"; repFamily "ERVL"; repLeft "-1273"; repStart "4139"; chr15 rmsk exon 66795529 66795741 764 + . gene_id "HERVL40_15q22.31"; transcript_id "HERVL40_15q22.31"; locus "HERVL40_15q22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0384"; repClass "LTR"; repEnd "4615"; repFamily "ERVL"; repLeft "-915"; repStart "4405"; ### HUERSP1_15q22.31 ### chr15 rmsk gene 66887808 66895981 . - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0176"; model_cov "6258"; model_pct "99.9"; chr15 rmsk exon 66887808 66888452 5023 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 66888453 66890053 44374 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "4676"; repStart "0"; chr15 rmsk exon 66890339 66891131 44374 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "4675"; repFamily "ERV1"; repLeft "3863"; repStart "-1588"; chr15 rmsk exon 66891420 66892299 44374 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "3862"; repFamily "ERV1"; repLeft "2953"; repStart "-2401"; chr15 rmsk exon 66892341 66895301 44374 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "2952"; repFamily "ERV1"; repLeft "2"; repStart "-3311"; chr15 rmsk exon 66895302 66895981 5316 - . gene_id "HUERSP1_15q22.31"; transcript_id "HUERSP1_15q22.31"; locus "HUERSP1_15q22.31"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0176"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_15q22.32 ### chr15 rmsk gene 66969224 66976624 . - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0260"; model_cov "6345"; model_pct "73.6"; chr15 rmsk exon 66969224 66969548 2699 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr15 rmsk exon 66969549 66969838 2372 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8336"; repStart "0"; chr15 rmsk exon 66969830 66969868 276 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr15 rmsk exon 66969862 66970749 49776 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5132"; repStart "-2607"; chr15 rmsk exon 66971047 66976120 49776 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "5131"; repFamily "ERV1"; repLeft "1"; repStart "-3495"; chr15 rmsk exon 66976121 66976624 3905 - . gene_id "HERVW_15q22.32"; transcript_id "HERVW_15q22.32"; locus "HERVW_15q22.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0260"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### ERVLE_15q22.32 ### chr15 rmsk gene 66976781 66977916 . + . gene_id "ERVLE_15q22.32"; transcript_id "ERVLE_15q22.32"; locus "ERVLE_15q22.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3145"; model_cov "1178"; model_pct "20.8"; chr15 rmsk exon 66976781 66977916 5116 + . gene_id "ERVLE_15q22.32"; transcript_id "ERVLE_15q22.32"; locus "ERVLE_15q22.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3145"; repClass "LTR"; repEnd "4806"; repFamily "ERVL"; repLeft "-861"; repStart "3628"; ### ERV316A3_15q23 ### chr15 rmsk gene 67932524 67936765 . + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2384"; model_cov "2482"; model_pct "47.5"; chr15 rmsk exon 67932524 67932938 1156 + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2384"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr15 rmsk exon 67932960 67933120 294 + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2384"; repClass "LTR"; repEnd "419"; repFamily "ERVL"; repLeft "-4807"; repStart "242"; chr15 rmsk exon 67933852 67934109 3983 + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2384"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-4560"; repStart "405"; chr15 rmsk exon 67934481 67934925 3983 + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2384"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "-4097"; repStart "667"; chr15 rmsk exon 67935216 67936765 3983 + . gene_id "ERV316A3_15q23"; transcript_id "ERV316A3_15q23"; locus "ERV316A3_15q23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2384"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "-2514"; repStart "1130"; ### HUERSP1_15q23a ### chr15 rmsk gene 68242569 68244135 . + . gene_id "HUERSP1_15q23a"; transcript_id "HUERSP1_15q23a"; locus "HUERSP1_15q23a"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0177"; model_cov "944"; model_pct "15.1"; chr15 rmsk exon 68242569 68243472 6957 + . gene_id "HUERSP1_15q23a"; transcript_id "HUERSP1_15q23a"; locus "HUERSP1_15q23a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0177"; repClass "LTR"; repEnd "3908"; repFamily "ERV1"; repLeft "-2355"; repStart "2996"; chr15 rmsk exon 68244099 68244135 6957 + . gene_id "HUERSP1_15q23a"; transcript_id "HUERSP1_15q23a"; locus "HUERSP1_15q23a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0177"; repClass "LTR"; repEnd "3941"; repFamily "ERV1"; repLeft "-2322"; repStart "3909"; ### ERVLE_15q23a ### chr15 rmsk gene 68867047 68868304 . - . gene_id "ERVLE_15q23a"; transcript_id "ERVLE_15q23a"; locus "ERVLE_15q23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3146"; model_cov "824"; model_pct "14.5"; chr15 rmsk exon 68867047 68867325 1039 - . gene_id "ERVLE_15q23a"; transcript_id "ERVLE_15q23a"; locus "ERVLE_15q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3146"; repClass "LTR"; repEnd "3964"; repFamily "ERVL"; repLeft "3688"; repStart "-1703"; chr15 rmsk exon 68867395 68867561 669 - . gene_id "ERVLE_15q23a"; transcript_id "ERVLE_15q23a"; locus "ERVLE_15q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3146"; repClass "LTR"; repEnd "3462"; repFamily "ERVL"; repLeft "3292"; repStart "-2205"; chr15 rmsk exon 68867937 68868304 1065 - . gene_id "ERVLE_15q23a"; transcript_id "ERVLE_15q23a"; locus "ERVLE_15q23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3146"; repClass "LTR"; repEnd "3283"; repFamily "ERVL"; repLeft "2905"; repStart "-2384"; ### ERVLE_15q23b ### chr15 rmsk gene 68879135 68880811 . + . gene_id "ERVLE_15q23b"; transcript_id "ERVLE_15q23b"; locus "ERVLE_15q23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3147"; model_cov "1023"; model_pct "18.1"; chr15 rmsk exon 68879135 68879423 314 + . gene_id "ERVLE_15q23b"; transcript_id "ERVLE_15q23b"; locus "ERVLE_15q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3147"; repClass "LTR"; repEnd "1866"; repFamily "ERVL"; repLeft "-3801"; repStart "1572"; chr15 rmsk exon 68879826 68880070 829 + . gene_id "ERVLE_15q23b"; transcript_id "ERVLE_15q23b"; locus "ERVLE_15q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3147"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "-3393"; repStart "2026"; chr15 rmsk exon 68880367 68880811 850 + . gene_id "ERVLE_15q23b"; transcript_id "ERVLE_15q23b"; locus "ERVLE_15q23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3147"; repClass "LTR"; repEnd "2756"; repFamily "ERVL"; repLeft "-2911"; repStart "2275"; ### ERVLE_15q23c ### chr15 rmsk gene 68927117 68927942 . + . gene_id "ERVLE_15q23c"; transcript_id "ERVLE_15q23c"; locus "ERVLE_15q23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3148"; model_cov "972"; model_pct "17.2"; chr15 rmsk exon 68927117 68927942 983 + . gene_id "ERVLE_15q23c"; transcript_id "ERVLE_15q23c"; locus "ERVLE_15q23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3148"; repClass "LTR"; repEnd "3224"; repFamily "ERVL"; repLeft "-2443"; repStart "2252"; ### ERVLE_15q23d ### chr15 rmsk gene 68972216 68973403 . - . gene_id "ERVLE_15q23d"; transcript_id "ERVLE_15q23d"; locus "ERVLE_15q23d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3149"; model_cov "607"; model_pct "10.7"; chr15 rmsk exon 68972216 68972369 1048 - . gene_id "ERVLE_15q23d"; transcript_id "ERVLE_15q23d"; locus "ERVLE_15q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3149"; repClass "LTR"; repEnd "3793"; repFamily "ERVL"; repLeft "3640"; repStart "-1874"; chr15 rmsk exon 68972844 68972972 1048 - . gene_id "ERVLE_15q23d"; transcript_id "ERVLE_15q23d"; locus "ERVLE_15q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3149"; repClass "LTR"; repEnd "3639"; repFamily "ERVL"; repLeft "3494"; repStart "-2028"; chr15 rmsk exon 68973114 68973403 730 - . gene_id "ERVLE_15q23d"; transcript_id "ERVLE_15q23d"; locus "ERVLE_15q23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3149"; repClass "LTR"; repEnd "3291"; repFamily "ERVL"; repLeft "2982"; repStart "-2376"; ### ERVLE_15q23e ### chr15 rmsk gene 68978657 68980165 . - . gene_id "ERVLE_15q23e"; transcript_id "ERVLE_15q23e"; locus "ERVLE_15q23e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3150"; model_cov "1545"; model_pct "27.3"; chr15 rmsk exon 68978657 68979014 719 - . gene_id "ERVLE_15q23e"; transcript_id "ERVLE_15q23e"; locus "ERVLE_15q23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3150"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "3334"; repStart "-1955"; chr15 rmsk exon 68979031 68979428 1142 - . gene_id "ERVLE_15q23e"; transcript_id "ERVLE_15q23e"; locus "ERVLE_15q23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3150"; repClass "LTR"; repEnd "2536"; repFamily "ERVL"; repLeft "2138"; repStart "-3131"; chr15 rmsk exon 68979431 68980165 1560 - . gene_id "ERVLE_15q23e"; transcript_id "ERVLE_15q23e"; locus "ERVLE_15q23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3150"; repClass "LTR"; repEnd "1960"; repFamily "ERVL"; repLeft "1191"; repStart "-3707"; ### ERVLE_15q23f ### chr15 rmsk gene 68980637 68982482 . - . gene_id "ERVLE_15q23f"; transcript_id "ERVLE_15q23f"; locus "ERVLE_15q23f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3151"; model_cov "1854"; model_pct "32.7"; chr15 rmsk exon 68980637 68981701 1642 - . gene_id "ERVLE_15q23f"; transcript_id "ERVLE_15q23f"; locus "ERVLE_15q23f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3151"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "3432"; repStart "-1152"; chr15 rmsk exon 68981778 68982024 705 - . gene_id "ERVLE_15q23f"; transcript_id "ERVLE_15q23f"; locus "ERVLE_15q23f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3151"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "2373"; repStart "-2959"; chr15 rmsk exon 68982051 68982482 1154 - . gene_id "ERVLE_15q23f"; transcript_id "ERVLE_15q23f"; locus "ERVLE_15q23f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3151"; repClass "LTR"; repEnd "2419"; repFamily "ERVL"; repLeft "1983"; repStart "-3248"; ### HERV3_15q23 ### chr15 rmsk gene 68991613 68995365 . - . gene_id "HERV3_15q23"; transcript_id "HERV3_15q23"; locus "HERV3_15q23"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0058"; model_cov "3090"; model_pct "36.7"; chr15 rmsk exon 68991613 68992346 3327 - . gene_id "HERV3_15q23"; transcript_id "HERV3_15q23"; locus "HERV3_15q23"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0058"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 68992348 68992507 861 - . gene_id "HERV3_15q23"; transcript_id "HERV3_15q23"; locus "HERV3_15q23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0058"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "8268"; repStart "0"; chr15 rmsk exon 68992503 68993728 7904 - . gene_id "HERV3_15q23"; transcript_id "HERV3_15q23"; locus "HERV3_15q23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0058"; repClass "LTR"; repEnd "6455"; repFamily "ERV1"; repLeft "5201"; repStart "-1971"; chr15 rmsk exon 68993707 68995365 10133 - . gene_id "HERV3_15q23"; transcript_id "HERV3_15q23"; locus "HERV3_15q23"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0058"; repClass "LTR"; repEnd "3878"; repFamily "ERV1"; repLeft "2200"; repStart "-4548"; ### HUERSP1_15q23b ### chr15 rmsk gene 69330196 69339368 . + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0178"; model_cov "6810"; model_pct "100.0"; chr15 rmsk exon 69330196 69330875 4811 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 69330876 69334029 20981 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "2344"; repFamily "ERV1"; repLeft "-3919"; repStart "-1273"; chr15 rmsk exon 69334328 69334773 13205 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "3362"; repFamily "ERV1"; repLeft "-2901"; repStart "2831"; chr15 rmsk exon 69334835 69334940 13205 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "3490"; repFamily "ERV1"; repLeft "-2773"; repStart "3363"; chr15 rmsk exon 69335706 69337814 16147 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "5802"; repFamily "ERV1"; repLeft "-461"; repStart "3716"; chr15 rmsk exon 69338239 69338687 3572 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5814"; chr15 rmsk exon 69338688 69339368 4974 + . gene_id "HUERSP1_15q23b"; transcript_id "HUERSP1_15q23b"; locus "HUERSP1_15q23b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0178"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_15q23a ### chr15 rmsk gene 69349149 69355184 . + . gene_id "ERVLB4_15q23a"; transcript_id "ERVLB4_15q23a"; locus "ERVLB4_15q23a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1520"; model_cov "5024"; model_pct "87.9"; chr15 rmsk exon 69349149 69349630 2905 + . gene_id "ERVLB4_15q23a"; transcript_id "ERVLB4_15q23a"; locus "ERVLB4_15q23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1520"; repClass "LTR"; repEnd "1202"; repFamily "ERVL"; repLeft "-4512"; repStart "688"; chr15 rmsk exon 69349942 69350360 27431 + . gene_id "ERVLB4_15q23a"; transcript_id "ERVLB4_15q23a"; locus "ERVLB4_15q23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1520"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-4011"; repStart "1203"; chr15 rmsk exon 69350667 69354654 27431 + . gene_id "ERVLB4_15q23a"; transcript_id "ERVLB4_15q23a"; locus "ERVLB4_15q23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1520"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "1704"; chr15 rmsk exon 69354655 69355184 2773 + . gene_id "ERVLB4_15q23a"; transcript_id "ERVLB4_15q23a"; locus "ERVLB4_15q23a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1520"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "-20"; repStart "1"; ### HERVL40_15q23 ### chr15 rmsk gene 69698413 69700596 . + . gene_id "HERVL40_15q23"; transcript_id "HERVL40_15q23"; locus "HERVL40_15q23"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0386"; model_cov "839"; model_pct "15.2"; chr15 rmsk exon 69698413 69699228 1915 + . gene_id "HERVL40_15q23"; transcript_id "HERVL40_15q23"; locus "HERVL40_15q23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0386"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "-991"; repStart "3981"; chr15 rmsk exon 69699764 69700182 1228 + . gene_id "HERVL40_15q23"; transcript_id "HERVL40_15q23"; locus "HERVL40_15q23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0386"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "-3"; repStart "5246"; chr15 rmsk exon 69700183 69700596 1304 + . gene_id "HERVL40_15q23"; transcript_id "HERVL40_15q23"; locus "HERVL40_15q23"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0386"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "2"; ### ERVLB4_15q23b ### chr15 rmsk gene 70270839 70271841 . + . gene_id "ERVLB4_15q23b"; transcript_id "ERVLB4_15q23b"; locus "ERVLB4_15q23b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1521"; model_cov "1093"; model_pct "19.1"; chr15 rmsk exon 70270839 70271841 1371 + . gene_id "ERVLB4_15q23b"; transcript_id "ERVLB4_15q23b"; locus "ERVLB4_15q23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1521"; repClass "LTR"; repEnd "5277"; repFamily "ERVL"; repLeft "-437"; repStart "4184"; ### ERVLE_15q23g ### chr15 rmsk gene 70601492 70603765 . + . gene_id "ERVLE_15q23g"; transcript_id "ERVLE_15q23g"; locus "ERVLE_15q23g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3152"; model_cov "1296"; model_pct "22.9"; chr15 rmsk exon 70601492 70601895 486 + . gene_id "ERVLE_15q23g"; transcript_id "ERVLE_15q23g"; locus "ERVLE_15q23g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3152"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "-4210"; repStart "1031"; chr15 rmsk exon 70602912 70603765 1353 + . gene_id "ERVLE_15q23g"; transcript_id "ERVLE_15q23g"; locus "ERVLE_15q23g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3152"; repClass "LTR"; repEnd "1971"; repFamily "ERVL"; repLeft "-3696"; repStart "1101"; ### ERVLE_15q23h ### chr15 rmsk gene 70639530 70642154 . + . gene_id "ERVLE_15q23h"; transcript_id "ERVLE_15q23h"; locus "ERVLE_15q23h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3153"; model_cov "715"; model_pct "12.6"; chr15 rmsk exon 70639530 70639631 292 + . gene_id "ERVLE_15q23h"; transcript_id "ERVLE_15q23h"; locus "ERVLE_15q23h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3153"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "-5451"; repStart "115"; chr15 rmsk exon 70640689 70641099 1080 + . gene_id "ERVLE_15q23h"; transcript_id "ERVLE_15q23h"; locus "ERVLE_15q23h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3153"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "-823"; repStart "4391"; chr15 rmsk exon 70641996 70642154 360 + . gene_id "ERVLE_15q23h"; transcript_id "ERVLE_15q23h"; locus "ERVLE_15q23h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3153"; repClass "LTR"; repEnd "5351"; repFamily "ERVL"; repLeft "-316"; repStart "5190"; ### ERV316A3_15q24.1a ### chr15 rmsk gene 72618777 72620666 . + . gene_id "ERV316A3_15q24.1a"; transcript_id "ERV316A3_15q24.1a"; locus "ERV316A3_15q24.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2386"; model_cov "1769"; model_pct "33.8"; chr15 rmsk exon 72618777 72619778 1797 + . gene_id "ERV316A3_15q24.1a"; transcript_id "ERV316A3_15q24.1a"; locus "ERV316A3_15q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2386"; repClass "LTR"; repEnd "1547"; repFamily "ERVL"; repLeft "-3679"; repStart "536"; chr15 rmsk exon 72620059 72620666 1797 + . gene_id "ERV316A3_15q24.1a"; transcript_id "ERV316A3_15q24.1a"; locus "ERV316A3_15q24.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2386"; repClass "LTR"; repEnd "1818"; repFamily "ERVL"; repLeft "-3408"; repStart "1060"; ### ERVLE_15q24.1 ### chr15 rmsk gene 73418691 73423333 . - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3154"; model_cov "3306"; model_pct "58.3"; chr15 rmsk exon 73418691 73418772 326 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "4069"; repFamily "ERVL"; repLeft "3987"; repStart "-1598"; chr15 rmsk exon 73418808 73420106 3326 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "3589"; repFamily "ERVL"; repLeft "2326"; repStart "-2078"; chr15 rmsk exon 73420129 73421121 1351 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "2261"; repFamily "ERVL"; repLeft "1084"; repStart "-3406"; chr15 rmsk exon 73421456 73421639 416 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "1759"; repFamily "ERVL"; repLeft "1567"; repStart "-3908"; chr15 rmsk exon 73422141 73422434 489 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "1269"; repFamily "ERVL"; repLeft "970"; repStart "-4398"; chr15 rmsk exon 73422727 73422923 489 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "969"; repFamily "ERVL"; repLeft "776"; repStart "-4698"; chr15 rmsk exon 73423236 73423333 489 - . gene_id "ERVLE_15q24.1"; transcript_id "ERVLE_15q24.1"; locus "ERVLE_15q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3154"; repClass "LTR"; repEnd "775"; repFamily "ERVL"; repLeft "675"; repStart "-4892"; ### HUERSP1_15q24.1 ### chr15 rmsk gene 73576296 73577961 . + . gene_id "HUERSP1_15q24.1"; transcript_id "HUERSP1_15q24.1"; locus "HUERSP1_15q24.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0179"; model_cov "791"; model_pct "12.6"; chr15 rmsk exon 73576296 73576333 6460 + . gene_id "HUERSP1_15q24.1"; transcript_id "HUERSP1_15q24.1"; locus "HUERSP1_15q24.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0179"; repClass "LTR"; repEnd "5506"; repFamily "ERV1"; repLeft "-757"; repStart "5470"; chr15 rmsk exon 73576628 73577390 6460 + . gene_id "HUERSP1_15q24.1"; transcript_id "HUERSP1_15q24.1"; locus "HUERSP1_15q24.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0179"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "5507"; chr15 rmsk exon 73577392 73577961 4554 + . gene_id "HUERSP1_15q24.1"; transcript_id "HUERSP1_15q24.1"; locus "HUERSP1_15q24.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0179"; repClass "LTR"; repEnd "584"; repFamily "ERV1"; repLeft "-107"; repStart "1"; ### HERVH_15q24.1 ### chr15 rmsk gene 74354144 74359784 . + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1059"; model_cov "5057"; model_pct "65.6"; chr15 rmsk exon 74354144 74354537 2794 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 74354540 74357344 13717 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr15 rmsk exon 74357325 74357922 3463 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "3742"; repFamily "ERV1"; repLeft "-3971"; repStart "3141"; chr15 rmsk exon 74357914 74358945 7080 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "-2702"; repStart "3993"; chr15 rmsk exon 74358935 74359387 2823 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7269"; chr15 rmsk exon 74359388 74359784 2708 + . gene_id "HERVH_15q24.1"; transcript_id "HERVH_15q24.1"; locus "HERVH_15q24.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1059"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_15q24.1 ### chr15 rmsk gene 74359786 74361387 . + . gene_id "MER41_15q24.1"; transcript_id "MER41_15q24.1"; locus "MER41_15q24.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0465"; model_cov "1075"; model_pct "18.1"; chr15 rmsk exon 74359786 74360275 2090 + . gene_id "MER41_15q24.1"; transcript_id "MER41_15q24.1"; locus "MER41_15q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0465"; repClass "LTR"; repEnd "1457"; repFamily "ERV1"; repLeft "-4489"; repStart "946"; chr15 rmsk exon 74360584 74360620 2090 + . gene_id "MER41_15q24.1"; transcript_id "MER41_15q24.1"; locus "MER41_15q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0465"; repClass "LTR"; repEnd "3266"; repFamily "ERV1"; repLeft "-2680"; repStart "3212"; chr15 rmsk exon 74360916 74361026 2090 + . gene_id "MER41_15q24.1"; transcript_id "MER41_15q24.1"; locus "MER41_15q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0465"; repClass "LTR"; repEnd "3344"; repFamily "ERV1"; repLeft "-2602"; repStart "3267"; chr15 rmsk exon 74360995 74361387 1805 + . gene_id "MER41_15q24.1"; transcript_id "MER41_15q24.1"; locus "MER41_15q24.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0465"; repClass "LTR"; repEnd "3374"; repFamily "ERV1"; repLeft "-2572"; repStart "2941"; ### ERV316A3_15q24.1b ### chr15 rmsk gene 74493830 74502571 . - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2387"; model_cov "3638"; model_pct "69.6"; chr15 rmsk exon 74493830 74494264 6788 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "3260"; repStart "-1566"; chr15 rmsk exon 74494564 74494741 6788 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "3111"; repStart "-1967"; chr15 rmsk exon 74495034 74495492 6788 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "2682"; repStart "-2116"; chr15 rmsk exon 74496082 74496249 6788 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "2681"; repFamily "ERVL"; repLeft "2525"; repStart "-2545"; chr15 rmsk exon 74496742 74497999 6788 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "2524"; repFamily "ERVL"; repLeft "1247"; repStart "-2702"; chr15 rmsk exon 74499299 74499332 789 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "1506"; repFamily "ERVL"; repLeft "1477"; repStart "-3720"; chr15 rmsk exon 74499794 74500000 789 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "1476"; repFamily "ERVL"; repLeft "1269"; repStart "-3750"; chr15 rmsk exon 74500001 74500057 2658 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "1024"; repFamily "ERVL"; repLeft "974"; repStart "-4202"; chr15 rmsk exon 74500361 74500747 2658 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "973"; repFamily "ERVL"; repLeft "572"; repStart "-4253"; chr15 rmsk exon 74501003 74501155 2658 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "432"; repStart "-4655"; chr15 rmsk exon 74501440 74501556 2658 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "335"; repStart "-4795"; chr15 rmsk exon 74501858 74502144 2658 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "334"; repFamily "ERVL"; repLeft "27"; repStart "-4892"; chr15 rmsk exon 74502178 74502571 1228 - . gene_id "ERV316A3_15q24.1b"; transcript_id "ERV316A3_15q24.1b"; locus "ERV316A3_15q24.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2387"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "14"; repStart "-15"; ### HERVP71A_15q24.2 ### chr15 rmsk gene 75063487 75067944 . + . gene_id "HERVP71A_15q24.2"; transcript_id "HERVP71A_15q24.2"; locus "HERVP71A_15q24.2"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0070"; model_cov "3122"; model_pct "41.1"; chr15 rmsk exon 75063487 75063944 3411 + . gene_id "HERVP71A_15q24.2"; transcript_id "HERVP71A_15q24.2"; locus "HERVP71A_15q24.2"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0070"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 75063945 75065588 13102 + . gene_id "HERVP71A_15q24.2"; transcript_id "HERVP71A_15q24.2"; locus "HERVP71A_15q24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0070"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-5941"; repStart "2"; chr15 rmsk exon 75065721 75065783 11684 + . gene_id "HERVP71A_15q24.2"; transcript_id "HERVP71A_15q24.2"; locus "HERVP71A_15q24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0070"; repClass "LTR"; repEnd "4557"; repFamily "ERV1"; repLeft "-3033"; repStart "4495"; chr15 rmsk exon 75066525 75067944 11684 + . gene_id "HERVP71A_15q24.2"; transcript_id "HERVP71A_15q24.2"; locus "HERVP71A_15q24.2"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0070"; repClass "LTR"; repEnd "5971"; repFamily "ERV1"; repLeft "-1619"; repStart "4558"; ### MER41_15q24.2 ### chr15 rmsk gene 75146361 75150738 . + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; category "internal"; intModel "MER41-int"; locid "MER41-int_0466"; model_cov "2572"; model_pct "43.3"; chr15 rmsk exon 75146361 75146441 6366 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "2037"; repFamily "ERV1"; repLeft "-3909"; repStart "1954"; chr15 rmsk exon 75146751 75147077 7799 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "2314"; repFamily "ERV1"; repLeft "-3632"; repStart "1684"; chr15 rmsk exon 75147361 75147903 7799 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "4470"; repFamily "ERV1"; repLeft "-1476"; repStart "3911"; chr15 rmsk exon 75148217 75148934 7799 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "5186"; repFamily "ERV1"; repLeft "-760"; repStart "4471"; chr15 rmsk exon 75149447 75149816 3078 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "5723"; repFamily "ERV1"; repLeft "-223"; repStart "5360"; chr15 rmsk exon 75150494 75150738 3078 + . gene_id "MER41_15q24.2"; transcript_id "MER41_15q24.2"; locus "MER41_15q24.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0466"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5724"; ### HUERSP1_15q24.2 ### chr15 rmsk gene 75168605 75170205 . + . gene_id "HUERSP1_15q24.2"; transcript_id "HUERSP1_15q24.2"; locus "HUERSP1_15q24.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0180"; model_cov "997"; model_pct "15.9"; chr15 rmsk exon 75168605 75169294 5386 + . gene_id "HUERSP1_15q24.2"; transcript_id "HUERSP1_15q24.2"; locus "HUERSP1_15q24.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0180"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 75169295 75170205 5468 + . gene_id "HUERSP1_15q24.2"; transcript_id "HUERSP1_15q24.2"; locus "HUERSP1_15q24.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0180"; repClass "LTR"; repEnd "998"; repFamily "ERV1"; repLeft "-5265"; repStart "1"; ### ERV316A3_15q24.2 ### chr15 rmsk gene 75314899 75316770 . + . gene_id "ERV316A3_15q24.2"; transcript_id "ERV316A3_15q24.2"; locus "ERV316A3_15q24.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2388"; model_cov "1763"; model_pct "33.7"; chr15 rmsk exon 75314899 75315870 1509 + . gene_id "ERV316A3_15q24.2"; transcript_id "ERV316A3_15q24.2"; locus "ERV316A3_15q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2388"; repClass "LTR"; repEnd "1547"; repFamily "ERVL"; repLeft "-3679"; repStart "542"; chr15 rmsk exon 75316169 75316770 1509 + . gene_id "ERV316A3_15q24.2"; transcript_id "ERV316A3_15q24.2"; locus "ERV316A3_15q24.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2388"; repClass "LTR"; repEnd "1818"; repFamily "ERVL"; repLeft "-3408"; repStart "1060"; ### HML1_15q24.2 ### chr15 rmsk gene 76262993 76269680 . + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0102"; model_cov "5529"; model_pct "90.7"; chr15 rmsk exon 76262993 76263324 1736 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "-218"; chr15 rmsk exon 76263325 76266621 29907 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "3336"; repFamily "ERVK"; repLeft "-2760"; repStart "1"; chr15 rmsk exon 76266917 76267643 29907 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "4059"; repFamily "ERVK"; repLeft "-2037"; repStart "3337"; chr15 rmsk exon 76267629 76268731 7855 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "4801"; chr15 rmsk exon 76268794 76268848 445 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "6014"; repFamily "ERVK"; repLeft "-82"; repStart "5960"; chr15 rmsk exon 76268900 76269221 851 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "6071"; repFamily "ERVK"; repLeft "-25"; repStart "5749"; chr15 rmsk exon 76269234 76269680 1952 + . gene_id "HML1_15q24.2"; transcript_id "HML1_15q24.2"; locus "HML1_15q24.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0102"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_15q24.3a ### chr15 rmsk gene 76315039 76318446 . - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2389"; model_cov "2986"; model_pct "57.1"; chr15 rmsk exon 76315039 76315510 843 - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2389"; repClass "LTR"; repEnd "5199"; repFamily "ERVL"; repLeft "4594"; repStart "-27"; chr15 rmsk exon 76315539 76317369 6269 - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2389"; repClass "LTR"; repEnd "4470"; repFamily "ERVL"; repLeft "2633"; repStart "-756"; chr15 rmsk exon 76317381 76317502 325 - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2389"; repClass "LTR"; repEnd "2846"; repFamily "ERVL"; repLeft "2725"; repStart "-2380"; chr15 rmsk exon 76317501 76317943 1746 - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2389"; repClass "LTR"; repEnd "2617"; repFamily "ERVL"; repLeft "2194"; repStart "-2609"; chr15 rmsk exon 76318361 76318446 292 - . gene_id "ERV316A3_15q24.3a"; transcript_id "ERV316A3_15q24.3a"; locus "ERV316A3_15q24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2389"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "299"; repStart "-64"; ### HERVK11D_15q24.3 ### chr15 rmsk gene 76639181 76641589 . + . gene_id "HERVK11D_15q24.3"; transcript_id "HERVK11D_15q24.3"; locus "HERVK11D_15q24.3"; category "oneside"; intModel "HERVK11D-int"; locid "HERVK11D-int_0020"; model_cov "1536"; model_pct "19.8"; chr15 rmsk exon 76639181 76640716 12953 + . gene_id "HERVK11D_15q24.3"; transcript_id "HERVK11D_15q24.3"; locus "HERVK11D_15q24.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0020"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "0"; repStart "6216"; chr15 rmsk exon 76640717 76641589 7362 + . gene_id "HERVK11D_15q24.3"; transcript_id "HERVK11D_15q24.3"; locus "HERVK11D_15q24.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0020"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_15q24.3a ### chr15 rmsk gene 76911472 76915969 . + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3155"; model_cov "3398"; model_pct "60.0"; chr15 rmsk exon 76911472 76911728 3204 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "1041"; repFamily "ERVL"; repLeft "-4626"; repStart "780"; chr15 rmsk exon 76912057 76912187 3204 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "1169"; repFamily "ERVL"; repLeft "-4498"; repStart "1042"; chr15 rmsk exon 76912500 76914012 3204 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "-2922"; repStart "1170"; chr15 rmsk exon 76914292 76914351 302 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "3235"; repFamily "ERVL"; repLeft "-2432"; repStart "3177"; chr15 rmsk exon 76914338 76915016 827 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "3744"; repFamily "ERVL"; repLeft "-1923"; repStart "2984"; chr15 rmsk exon 76915027 76915104 285 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "3978"; repFamily "ERVL"; repLeft "-1689"; repStart "3898"; chr15 rmsk exon 76915409 76915574 722 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "4126"; repFamily "ERVL"; repLeft "-1541"; repStart "3958"; chr15 rmsk exon 76915620 76915969 1082 + . gene_id "ERVLE_15q24.3a"; transcript_id "ERVLE_15q24.3a"; locus "ERVLE_15q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3155"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "-1103"; repStart "4195"; ### ERVLE_15q24.3b ### chr15 rmsk gene 76917470 76918846 . - . gene_id "ERVLE_15q24.3b"; transcript_id "ERVLE_15q24.3b"; locus "ERVLE_15q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3156"; model_cov "1051"; model_pct "18.5"; chr15 rmsk exon 76917470 76917775 2491 - . gene_id "ERVLE_15q24.3b"; transcript_id "ERVLE_15q24.3b"; locus "ERVLE_15q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3156"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "4971"; repStart "-391"; chr15 rmsk exon 76918083 76918674 2491 - . gene_id "ERVLE_15q24.3b"; transcript_id "ERVLE_15q24.3b"; locus "ERVLE_15q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3156"; repClass "LTR"; repEnd "4970"; repFamily "ERVL"; repLeft "4324"; repStart "-697"; chr15 rmsk exon 76918752 76918846 288 - . gene_id "ERVLE_15q24.3b"; transcript_id "ERVLE_15q24.3b"; locus "ERVLE_15q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3156"; repClass "LTR"; repEnd "532"; repFamily "ERVL"; repLeft "432"; repStart "-5135"; ### ERVLE_15q24.3c ### chr15 rmsk gene 76920596 76921140 . - . gene_id "ERVLE_15q24.3c"; transcript_id "ERVLE_15q24.3c"; locus "ERVLE_15q24.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3157"; model_cov "570"; model_pct "10.1"; chr15 rmsk exon 76920596 76921140 1034 - . gene_id "ERVLE_15q24.3c"; transcript_id "ERVLE_15q24.3c"; locus "ERVLE_15q24.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3157"; repClass "LTR"; repEnd "5187"; repFamily "ERVL"; repLeft "4617"; repStart "-480"; ### ERV316A3_15q24.3b ### chr15 rmsk gene 76921267 76922108 . - . gene_id "ERV316A3_15q24.3b"; transcript_id "ERV316A3_15q24.3b"; locus "ERV316A3_15q24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2390"; model_cov "851"; model_pct "16.3"; chr15 rmsk exon 76921267 76922108 2647 - . gene_id "ERV316A3_15q24.3b"; transcript_id "ERV316A3_15q24.3b"; locus "ERV316A3_15q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2390"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2234"; repStart "-2141"; ### ERVLE_15q24.3d ### chr15 rmsk gene 77089040 77091246 . - . gene_id "ERVLE_15q24.3d"; transcript_id "ERVLE_15q24.3d"; locus "ERVLE_15q24.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3158"; model_cov "1750"; model_pct "30.9"; chr15 rmsk exon 77089040 77089343 3589 - . gene_id "ERVLE_15q24.3d"; transcript_id "ERVLE_15q24.3d"; locus "ERVLE_15q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3158"; repClass "LTR"; repEnd "5247"; repFamily "ERVL"; repLeft "4949"; repStart "-420"; chr15 rmsk exon 77089552 77089925 3589 - . gene_id "ERVLE_15q24.3d"; transcript_id "ERVLE_15q24.3d"; locus "ERVLE_15q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3158"; repClass "LTR"; repEnd "4948"; repFamily "ERVL"; repLeft "4556"; repStart "-719"; chr15 rmsk exon 77090226 77091246 3589 - . gene_id "ERVLE_15q24.3d"; transcript_id "ERVLE_15q24.3d"; locus "ERVLE_15q24.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3158"; repClass "LTR"; repEnd "4555"; repFamily "ERVL"; repLeft "3495"; repStart "-1112"; ### ERVLE_15q25.1a ### chr15 rmsk gene 78906065 78907715 . + . gene_id "ERVLE_15q25.1a"; transcript_id "ERVLE_15q25.1a"; locus "ERVLE_15q25.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3159"; model_cov "1262"; model_pct "22.3"; chr15 rmsk exon 78906065 78906165 375 + . gene_id "ERVLE_15q25.1a"; transcript_id "ERVLE_15q25.1a"; locus "ERVLE_15q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3159"; repClass "LTR"; repEnd "3952"; repFamily "ERVL"; repLeft "-1715"; repStart "3845"; chr15 rmsk exon 78906446 78906723 929 + . gene_id "ERVLE_15q25.1a"; transcript_id "ERVLE_15q25.1a"; locus "ERVLE_15q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3159"; repClass "LTR"; repEnd "4429"; repFamily "ERVL"; repLeft "-1238"; repStart "4140"; chr15 rmsk exon 78906737 78907419 2152 + . gene_id "ERVLE_15q25.1a"; transcript_id "ERVLE_15q25.1a"; locus "ERVLE_15q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3159"; repClass "LTR"; repEnd "5241"; repFamily "ERVL"; repLeft "-426"; repStart "4516"; chr15 rmsk exon 78907578 78907715 304 + . gene_id "ERVLE_15q25.1a"; transcript_id "ERVLE_15q25.1a"; locus "ERVLE_15q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3159"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5526"; ### ERVLE_15q25.1b ### chr15 rmsk gene 79128336 79130936 . + . gene_id "ERVLE_15q25.1b"; transcript_id "ERVLE_15q25.1b"; locus "ERVLE_15q25.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3160"; model_cov "980"; model_pct "17.3"; chr15 rmsk exon 79128336 79129048 1364 + . gene_id "ERVLE_15q25.1b"; transcript_id "ERVLE_15q25.1b"; locus "ERVLE_15q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3160"; repClass "LTR"; repEnd "4917"; repFamily "ERVL"; repLeft "-750"; repStart "4169"; chr15 rmsk exon 79130700 79130936 286 + . gene_id "ERVLE_15q25.1b"; transcript_id "ERVLE_15q25.1b"; locus "ERVLE_15q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3160"; repClass "LTR"; repEnd "5183"; repFamily "ERVL"; repLeft "-484"; repStart "4951"; ### ERV316A3_15q25.1a ### chr15 rmsk gene 79226963 79227795 . + . gene_id "ERV316A3_15q25.1a"; transcript_id "ERV316A3_15q25.1a"; locus "ERV316A3_15q25.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2391"; model_cov "669"; model_pct "12.8"; chr15 rmsk exon 79226963 79227657 1399 + . gene_id "ERV316A3_15q25.1a"; transcript_id "ERV316A3_15q25.1a"; locus "ERV316A3_15q25.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2391"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4557"; chr15 rmsk exon 79227658 79227795 612 + . gene_id "ERV316A3_15q25.1a"; transcript_id "ERV316A3_15q25.1a"; locus "ERV316A3_15q25.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2391"; repClass "LTR"; repEnd "135"; repFamily "ERVL"; repLeft "-303"; repStart "1"; ### ERV316A3_15q25.1b ### chr15 rmsk gene 79402815 79407567 . - . gene_id "ERV316A3_15q25.1b"; transcript_id "ERV316A3_15q25.1b"; locus "ERV316A3_15q25.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2392"; model_cov "4396"; model_pct "84.1"; chr15 rmsk exon 79402815 79402859 1299 - . gene_id "ERV316A3_15q25.1b"; transcript_id "ERV316A3_15q25.1b"; locus "ERV316A3_15q25.1b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2392"; repClass "LTR"; repEnd "48"; repFamily "ERVL"; repLeft "2"; repStart "-520"; chr15 rmsk exon 79403285 79406527 4871 - . gene_id "ERV316A3_15q25.1b"; transcript_id "ERV316A3_15q25.1b"; locus "ERV316A3_15q25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2392"; repClass "LTR"; repEnd "4835"; repFamily "ERVL"; repLeft "1359"; repStart "-391"; chr15 rmsk exon 79406609 79406857 278 - . gene_id "ERV316A3_15q25.1b"; transcript_id "ERV316A3_15q25.1b"; locus "ERV316A3_15q25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2392"; repClass "LTR"; repEnd "2007"; repFamily "ERVL"; repLeft "1778"; repStart "-3219"; chr15 rmsk exon 79406883 79407567 674 - . gene_id "ERV316A3_15q25.1b"; transcript_id "ERV316A3_15q25.1b"; locus "ERV316A3_15q25.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2392"; repClass "LTR"; repEnd "1630"; repFamily "ERVL"; repLeft "939"; repStart "-3596"; ### ERV316A3_15q25.1c ### chr15 rmsk gene 79540213 79543477 . + . gene_id "ERV316A3_15q25.1c"; transcript_id "ERV316A3_15q25.1c"; locus "ERV316A3_15q25.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2393"; model_cov "2569"; model_pct "49.2"; chr15 rmsk exon 79540213 79540520 633 + . gene_id "ERV316A3_15q25.1c"; transcript_id "ERV316A3_15q25.1c"; locus "ERV316A3_15q25.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2393"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-119"; repStart "7"; chr15 rmsk exon 79540529 79542153 4170 + . gene_id "ERV316A3_15q25.1c"; transcript_id "ERV316A3_15q25.1c"; locus "ERV316A3_15q25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2393"; repClass "LTR"; repEnd "2816"; repFamily "ERVL"; repLeft "-2410"; repStart "1178"; chr15 rmsk exon 79542158 79543070 3067 + . gene_id "ERV316A3_15q25.1c"; transcript_id "ERV316A3_15q25.1c"; locus "ERV316A3_15q25.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2393"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4295"; chr15 rmsk exon 79543071 79543477 638 + . gene_id "ERV316A3_15q25.1c"; transcript_id "ERV316A3_15q25.1c"; locus "ERV316A3_15q25.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2393"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-1"; repStart "3"; ### ERVLE_15q25.1c ### chr15 rmsk gene 79609620 79611802 . - . gene_id "ERVLE_15q25.1c"; transcript_id "ERVLE_15q25.1c"; locus "ERVLE_15q25.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3161"; model_cov "2070"; model_pct "36.5"; chr15 rmsk exon 79609620 79610491 2212 - . gene_id "ERVLE_15q25.1c"; transcript_id "ERVLE_15q25.1c"; locus "ERVLE_15q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3161"; repClass "LTR"; repEnd "3144"; repFamily "ERVL"; repLeft "2263"; repStart "-2523"; chr15 rmsk exon 79610682 79610992 2212 - . gene_id "ERVLE_15q25.1c"; transcript_id "ERVLE_15q25.1c"; locus "ERVLE_15q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3161"; repClass "LTR"; repEnd "2262"; repFamily "ERVL"; repLeft "1937"; repStart "-3405"; chr15 rmsk exon 79611051 79611802 765 - . gene_id "ERVLE_15q25.1c"; transcript_id "ERVLE_15q25.1c"; locus "ERVLE_15q25.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3161"; repClass "LTR"; repEnd "1828"; repFamily "ERVL"; repLeft "964"; repStart "-3839"; ### ERVLE_15q25.1d ### chr15 rmsk gene 79611845 79613151 . + . gene_id "ERVLE_15q25.1d"; transcript_id "ERVLE_15q25.1d"; locus "ERVLE_15q25.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3162"; model_cov "1151"; model_pct "20.3"; chr15 rmsk exon 79611845 79612291 953 + . gene_id "ERVLE_15q25.1d"; transcript_id "ERVLE_15q25.1d"; locus "ERVLE_15q25.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3162"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "-998"; repStart "4192"; chr15 rmsk exon 79612499 79613151 1804 + . gene_id "ERVLE_15q25.1d"; transcript_id "ERVLE_15q25.1d"; locus "ERVLE_15q25.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3162"; repClass "LTR"; repEnd "5272"; repFamily "ERVL"; repLeft "-395"; repStart "4598"; ### HERVL40_15q25.1 ### chr15 rmsk gene 79627044 79631630 . + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0387"; model_cov "2656"; model_pct "48.0"; chr15 rmsk exon 79627044 79627519 1568 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "63"; chr15 rmsk exon 79627524 79627582 324 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "-5455"; repStart "17"; chr15 rmsk exon 79627812 79628181 773 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "1302"; repFamily "ERVL"; repLeft "-4228"; repStart "918"; chr15 rmsk exon 79628292 79628461 511 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "-3919"; repStart "1445"; chr15 rmsk exon 79628461 79628633 7107 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "2675"; repFamily "ERVL"; repLeft "-2855"; repStart "2522"; chr15 rmsk exon 79629128 79630684 7107 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "4325"; repFamily "ERVL"; repLeft "-1205"; repStart "2676"; chr15 rmsk exon 79630802 79631138 1430 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "-2"; repStart "5282"; chr15 rmsk exon 79631145 79631630 1926 + . gene_id "HERVL40_15q25.1"; transcript_id "HERVL40_15q25.1"; locus "HERVL40_15q25.1"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0387"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### HERVL_15q25.1a ### chr15 rmsk gene 79690965 79691987 . - . gene_id "HERVL_15q25.1a"; transcript_id "HERVL_15q25.1a"; locus "HERVL_15q25.1a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1123"; model_cov "727"; model_pct "12.9"; chr15 rmsk exon 79690965 79691318 13222 - . gene_id "HERVL_15q25.1a"; transcript_id "HERVL_15q25.1a"; locus "HERVL_15q25.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1123"; repClass "LTR"; repEnd "2076"; repFamily "ERVL"; repLeft "1725"; repStart "-3578"; chr15 rmsk exon 79691628 79691987 13222 - . gene_id "HERVL_15q25.1a"; transcript_id "HERVL_15q25.1a"; locus "HERVL_15q25.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1123"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "1348"; repStart "-3930"; ### HERVL_15q25.1b ### chr15 rmsk gene 79692069 79693776 . - . gene_id "HERVL_15q25.1b"; transcript_id "HERVL_15q25.1b"; locus "HERVL_15q25.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1124"; model_cov "1345"; model_pct "23.8"; chr15 rmsk exon 79692069 79693352 13222 - . gene_id "HERVL_15q25.1b"; transcript_id "HERVL_15q25.1b"; locus "HERVL_15q25.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1124"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "379"; repStart "-3930"; chr15 rmsk exon 79693353 79693776 2777 - . gene_id "HERVL_15q25.1b"; transcript_id "HERVL_15q25.1b"; locus "HERVL_15q25.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1124"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_15q25.1e ### chr15 rmsk gene 79821616 79823244 . + . gene_id "ERVLE_15q25.1e"; transcript_id "ERVLE_15q25.1e"; locus "ERVLE_15q25.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3163"; model_cov "961"; model_pct "17.0"; chr15 rmsk exon 79821616 79822026 3407 + . gene_id "ERVLE_15q25.1e"; transcript_id "ERVLE_15q25.1e"; locus "ERVLE_15q25.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3163"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "-526"; repStart "4703"; chr15 rmsk exon 79822206 79822682 3407 + . gene_id "ERVLE_15q25.1e"; transcript_id "ERVLE_15q25.1e"; locus "ERVLE_15q25.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3163"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "5142"; chr15 rmsk exon 79822688 79823244 1907 + . gene_id "ERVLE_15q25.1e"; transcript_id "ERVLE_15q25.1e"; locus "ERVLE_15q25.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3163"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "5"; ### HERVI_15q25.1 ### chr15 rmsk gene 79915868 79918144 . - . gene_id "HERVI_15q25.1"; transcript_id "HERVI_15q25.1"; locus "HERVI_15q25.1"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0030"; model_cov "1582"; model_pct "20.3"; chr15 rmsk exon 79915868 79916501 4886 - . gene_id "HERVI_15q25.1"; transcript_id "HERVI_15q25.1"; locus "HERVI_15q25.1"; repName "LTR10E"; geneRegion "ltr"; locid "HERVI-int_0030"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15 rmsk exon 79916599 79918144 3952 - . gene_id "HERVI_15q25.1"; transcript_id "HERVI_15q25.1"; locus "HERVI_15q25.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0030"; repClass "LTR"; repEnd "7023"; repFamily "ERV1"; repLeft "5441"; repStart "-762"; ### HERVIP10FH_15q25.1 ### chr15 rmsk gene 79918724 79920814 . - . gene_id "HERVIP10FH_15q25.1"; transcript_id "HERVIP10FH_15q25.1"; locus "HERVIP10FH_15q25.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0147"; model_cov "924"; model_pct "18.1"; chr15 rmsk exon 79918724 79918982 1427 - . gene_id "HERVIP10FH_15q25.1"; transcript_id "HERVIP10FH_15q25.1"; locus "HERVIP10FH_15q25.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0147"; repClass "LTR"; repEnd "2283"; repFamily "ERV1"; repLeft "2042"; repStart "-2819"; chr15 rmsk exon 79919647 79920169 2146 - . gene_id "HERVIP10FH_15q25.1"; transcript_id "HERVIP10FH_15q25.1"; locus "HERVIP10FH_15q25.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0147"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "24"; repStart "-4395"; chr15 rmsk exon 79920194 79920814 4693 - . gene_id "HERVIP10FH_15q25.1"; transcript_id "HERVIP10FH_15q25.1"; locus "HERVIP10FH_15q25.1"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0147"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_15q25.1f ### chr15 rmsk gene 80193697 80196498 . + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3164"; model_cov "1931"; model_pct "34.1"; chr15 rmsk exon 80193697 80194022 1309 + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3164"; repClass "LTR"; repEnd "2459"; repFamily "ERVL"; repLeft "-3208"; repStart "2117"; chr15 rmsk exon 80194254 80194911 2039 + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3164"; repClass "LTR"; repEnd "3172"; repFamily "ERVL"; repLeft "-2495"; repStart "2497"; chr15 rmsk exon 80194917 80195413 1659 + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3164"; repClass "LTR"; repEnd "4332"; repFamily "ERVL"; repLeft "-1335"; repStart "3822"; chr15 rmsk exon 80195837 80196091 799 + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3164"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "-635"; repStart "4766"; chr15 rmsk exon 80196361 80196498 396 + . gene_id "ERVLE_15q25.1f"; transcript_id "ERVLE_15q25.1f"; locus "ERVLE_15q25.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3164"; repClass "LTR"; repEnd "5263"; repFamily "ERVL"; repLeft "-404"; repStart "5125"; ### HUERSP3B_15q25.1 ### chr15 rmsk gene 80366025 80371154 . + . gene_id "HUERSP3B_15q25.1"; transcript_id "HUERSP3B_15q25.1"; locus "HUERSP3B_15q25.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0117"; model_cov "4266"; model_pct "57.5"; chr15 rmsk exon 80366025 80366605 3750 + . gene_id "HUERSP3B_15q25.1"; transcript_id "HUERSP3B_15q25.1"; locus "HUERSP3B_15q25.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0117"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 80366623 80369179 17062 + . gene_id "HUERSP3B_15q25.1"; transcript_id "HUERSP3B_15q25.1"; locus "HUERSP3B_15q25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0117"; repClass "LTR"; repEnd "3012"; repFamily "ERV1"; repLeft "-4406"; repStart "17"; chr15 rmsk exon 80369609 80369915 17062 + . gene_id "HUERSP3B_15q25.1"; transcript_id "HUERSP3B_15q25.1"; locus "HUERSP3B_15q25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0117"; repClass "LTR"; repEnd "3374"; repFamily "ERV1"; repLeft "-4044"; repStart "3013"; chr15 rmsk exon 80370224 80371154 17062 + . gene_id "HUERSP3B_15q25.1"; transcript_id "HUERSP3B_15q25.1"; locus "HUERSP3B_15q25.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0117"; repClass "LTR"; repEnd "4285"; repFamily "ERV1"; repLeft "-3133"; repStart "3375"; ### ERV316A3_15q25.1d ### chr15 rmsk gene 80655173 80656937 . - . gene_id "ERV316A3_15q25.1d"; transcript_id "ERV316A3_15q25.1d"; locus "ERV316A3_15q25.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2395"; model_cov "894"; model_pct "17.1"; chr15 rmsk exon 80655173 80655437 687 - . gene_id "ERV316A3_15q25.1d"; transcript_id "ERV316A3_15q25.1d"; locus "ERV316A3_15q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2395"; repClass "LTR"; repEnd "3601"; repFamily "ERVL"; repLeft "3324"; repStart "-1625"; chr15 rmsk exon 80656177 80656491 407 - . gene_id "ERV316A3_15q25.1d"; transcript_id "ERV316A3_15q25.1d"; locus "ERV316A3_15q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2395"; repClass "LTR"; repEnd "3024"; repFamily "ERVL"; repLeft "2483"; repStart "-2202"; chr15 rmsk exon 80656858 80656937 407 - . gene_id "ERV316A3_15q25.1d"; transcript_id "ERV316A3_15q25.1d"; locus "ERV316A3_15q25.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2395"; repClass "LTR"; repEnd "2637"; repFamily "ERVL"; repLeft "2561"; repStart "-2589"; ### MER101_15q25.1a ### chr15 rmsk gene 81114948 81117237 . - . gene_id "MER101_15q25.1a"; transcript_id "MER101_15q25.1a"; locus "MER101_15q25.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0338"; model_cov "1653"; model_pct "24.9"; chr15 rmsk exon 81114948 81115262 2688 - . gene_id "MER101_15q25.1a"; transcript_id "MER101_15q25.1a"; locus "MER101_15q25.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0338"; repClass "LTR"; repEnd "314"; repFamily "ERV1"; repLeft "1"; repStart "-131"; chr15 rmsk exon 81115263 81115678 1329 - . gene_id "MER101_15q25.1a"; transcript_id "MER101_15q25.1a"; locus "MER101_15q25.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0338"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6200"; repStart "0"; chr15 rmsk exon 81115945 81116136 770 - . gene_id "MER101_15q25.1a"; transcript_id "MER101_15q25.1a"; locus "MER101_15q25.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0338"; repClass "LTR"; repEnd "6209"; repFamily "ERV1"; repLeft "6005"; repStart "-430"; chr15 rmsk exon 81116598 81117237 2559 - . gene_id "MER101_15q25.1a"; transcript_id "MER101_15q25.1a"; locus "MER101_15q25.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0338"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "3606"; repStart "-2023"; ### MER101_15q25.1b ### chr15 rmsk gene 81118757 81120700 . - . gene_id "MER101_15q25.1b"; transcript_id "MER101_15q25.1b"; locus "MER101_15q25.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0339"; model_cov "2155"; model_pct "32.5"; chr15 rmsk exon 81118757 81119429 1394 - . gene_id "MER101_15q25.1b"; transcript_id "MER101_15q25.1b"; locus "MER101_15q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0339"; repClass "LTR"; repEnd "5340"; repFamily "ERV1"; repLeft "4233"; repStart "-1299"; chr15 rmsk exon 81119436 81119783 1474 - . gene_id "MER101_15q25.1b"; transcript_id "MER101_15q25.1b"; locus "MER101_15q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0339"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "3424"; repStart "-2854"; chr15 rmsk exon 81119922 81120480 2809 - . gene_id "MER101_15q25.1b"; transcript_id "MER101_15q25.1b"; locus "MER101_15q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0339"; repClass "LTR"; repEnd "3440"; repFamily "ERV1"; repLeft "2838"; repStart "-3199"; chr15 rmsk exon 81120615 81120700 599 - . gene_id "MER101_15q25.1b"; transcript_id "MER101_15q25.1b"; locus "MER101_15q25.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0339"; repClass "LTR"; repEnd "2846"; repFamily "ERV1"; repLeft "2761"; repStart "-3793"; ### MER101_15q25.1c ### chr15 rmsk gene 81120843 81121708 . - . gene_id "MER101_15q25.1c"; transcript_id "MER101_15q25.1c"; locus "MER101_15q25.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0340"; model_cov "1232"; model_pct "18.6"; chr15 rmsk exon 81120843 81121708 2653 - . gene_id "MER101_15q25.1c"; transcript_id "MER101_15q25.1c"; locus "MER101_15q25.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0340"; repClass "LTR"; repEnd "3521"; repFamily "ERV1"; repLeft "2289"; repStart "-3118"; ### ERV316A3_15q25.2a ### chr15 rmsk gene 81572878 81574370 . + . gene_id "ERV316A3_15q25.2a"; transcript_id "ERV316A3_15q25.2a"; locus "ERV316A3_15q25.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2396"; model_cov "1366"; model_pct "26.1"; chr15 rmsk exon 81572878 81573385 809 + . gene_id "ERV316A3_15q25.2a"; transcript_id "ERV316A3_15q25.2a"; locus "ERV316A3_15q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2396"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "-2520"; repStart "2159"; chr15 rmsk exon 81573530 81573691 540 + . gene_id "ERV316A3_15q25.2a"; transcript_id "ERV316A3_15q25.2a"; locus "ERV316A3_15q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2396"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2142"; repStart "2919"; chr15 rmsk exon 81573996 81574370 580 + . gene_id "ERV316A3_15q25.2a"; transcript_id "ERV316A3_15q25.2a"; locus "ERV316A3_15q25.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2396"; repClass "LTR"; repEnd "3424"; repFamily "ERVL"; repLeft "-1802"; repStart "2770"; ### ERV316A3_15q25.2b ### chr15 rmsk gene 82025012 82029004 . + . gene_id "ERV316A3_15q25.2b"; transcript_id "ERV316A3_15q25.2b"; locus "ERV316A3_15q25.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2397"; model_cov "2994"; model_pct "57.3"; chr15 rmsk exon 82025012 82025942 8721 + . gene_id "ERV316A3_15q25.2b"; transcript_id "ERV316A3_15q25.2b"; locus "ERV316A3_15q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2397"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "-3220"; repStart "1142"; chr15 rmsk exon 82026464 82028264 8721 + . gene_id "ERV316A3_15q25.2b"; transcript_id "ERV316A3_15q25.2b"; locus "ERV316A3_15q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2397"; repClass "LTR"; repEnd "3861"; repFamily "ERVL"; repLeft "-1365"; repStart "2007"; chr15 rmsk exon 82028743 82029004 918 + . gene_id "ERV316A3_15q25.2b"; transcript_id "ERV316A3_15q25.2b"; locus "ERV316A3_15q25.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2397"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "-1082"; repStart "3868"; ### HERVI_15q25.2 ### chr15 rmsk gene 82487063 82496058 . + . gene_id "HERVI_15q25.2"; transcript_id "HERVI_15q25.2"; locus "HERVI_15q25.2"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0031"; model_cov "7757"; model_pct "99.6"; chr15 rmsk exon 82487063 82487491 1541 + . gene_id "HERVI_15q25.2"; transcript_id "HERVI_15q25.2"; locus "HERVI_15q25.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0031"; repClass "LTR"; repEnd "533"; repFamily "ERV1"; repLeft "-14"; repStart "1"; chr15 rmsk exon 82487827 82487845 1541 + . gene_id "HERVI_15q25.2"; transcript_id "HERVI_15q25.2"; locus "HERVI_15q25.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0031"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "534"; chr15 rmsk exon 82487870 82495617 26271 + . gene_id "HERVI_15q25.2"; transcript_id "HERVI_15q25.2"; locus "HERVI_15q25.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0031"; repClass "LTR"; repEnd "7783"; repFamily "ERV1"; repLeft "-2"; repStart "26"; chr15 rmsk exon 82495622 82496058 1309 + . gene_id "HERVI_15q25.2"; transcript_id "HERVI_15q25.2"; locus "HERVI_15q25.2"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0031"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-64"; repStart "-61"; ### HERVH_15q25.2 ### chr15 rmsk gene 82702377 82708400 . + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1060"; model_cov "5385"; model_pct "69.8"; chr15 rmsk exon 82702377 82702774 2688 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 82702777 82705672 14129 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr15 rmsk exon 82705652 82706246 3599 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3140"; chr15 rmsk exon 82706240 82707421 7902 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3962"; chr15 rmsk exon 82707423 82707642 1363 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 82707643 82708025 2245 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr15 rmsk exon 82708026 82708400 2369 + . gene_id "HERVH_15q25.2"; transcript_id "HERVH_15q25.2"; locus "HERVH_15q25.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1060"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_15q25.2 ### chr15 rmsk gene 82872821 82873752 . + . gene_id "ERVL_15q25.2"; transcript_id "ERVL_15q25.2"; locus "ERVL_15q25.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0393"; model_cov "738"; model_pct "12.8"; chr15 rmsk exon 82872821 82873302 973 + . gene_id "ERVL_15q25.2"; transcript_id "ERVL_15q25.2"; locus "ERVL_15q25.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0393"; repClass "LTR"; repEnd "4406"; repFamily "ERVL"; repLeft "-1351"; repStart "3890"; chr15 rmsk exon 82873543 82873752 507 + . gene_id "ERVL_15q25.2"; transcript_id "ERVL_15q25.2"; locus "ERVL_15q25.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0393"; repClass "LTR"; repEnd "4983"; repFamily "ERVL"; repLeft "-774"; repStart "4761"; ### ERVLE_15q25.2 ### chr15 rmsk gene 83232675 83236232 . + . gene_id "ERVLE_15q25.2"; transcript_id "ERVLE_15q25.2"; locus "ERVLE_15q25.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3166"; model_cov "3371"; model_pct "59.5"; chr15 rmsk exon 83232675 83233246 2392 + . gene_id "ERVLE_15q25.2"; transcript_id "ERVLE_15q25.2"; locus "ERVLE_15q25.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3166"; repClass "LTR"; repEnd "2651"; repFamily "ERVL"; repLeft "-3016"; repStart "2039"; chr15 rmsk exon 83233545 83235276 2392 + . gene_id "ERVLE_15q25.2"; transcript_id "ERVLE_15q25.2"; locus "ERVLE_15q25.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3166"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-1059"; repStart "2652"; chr15 rmsk exon 83235402 83235932 1460 + . gene_id "ERVLE_15q25.2"; transcript_id "ERVLE_15q25.2"; locus "ERVLE_15q25.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3166"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-351"; repStart "4725"; chr15 rmsk exon 83236025 83236232 312 + . gene_id "ERVLE_15q25.2"; transcript_id "ERVLE_15q25.2"; locus "ERVLE_15q25.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3166"; repClass "LTR"; repEnd "5655"; repFamily "ERVL"; repLeft "-12"; repStart "5443"; ### ERVLB4_15q25.2 ### chr15 rmsk gene 83337990 83340847 . + . gene_id "ERVLB4_15q25.2"; transcript_id "ERVLB4_15q25.2"; locus "ERVLB4_15q25.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1522"; model_cov "2014"; model_pct "35.2"; chr15 rmsk exon 83337990 83339392 8980 + . gene_id "ERVLB4_15q25.2"; transcript_id "ERVLB4_15q25.2"; locus "ERVLB4_15q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1522"; repClass "LTR"; repEnd "5138"; repFamily "ERVL"; repLeft "-576"; repStart "3701"; chr15 rmsk exon 83339547 83340099 3725 + . gene_id "ERVLB4_15q25.2"; transcript_id "ERVLB4_15q25.2"; locus "ERVLB4_15q25.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1522"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5137"; chr15 rmsk exon 83340100 83340468 2176 + . gene_id "ERVLB4_15q25.2"; transcript_id "ERVLB4_15q25.2"; locus "ERVLB4_15q25.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1522"; repClass "LTR"; repEnd "363"; repFamily "ERVL"; repLeft "-51"; repStart "1"; chr15 rmsk exon 83340787 83340847 2176 + . gene_id "ERVLB4_15q25.2"; transcript_id "ERVLB4_15q25.2"; locus "ERVLB4_15q25.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1522"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-8"; repStart "364"; ### HML2_15q25.2 ### chr15 rmsk gene 84160268 84163612 . + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0101"; model_cov "3522"; model_pct "46.7"; chr15 rmsk exon 84160268 84163612 11857 + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0101"; repClass "LTR"; repEnd "6330"; repFamily "ERVK"; repLeft "-1206"; repStart "2808"; ### ERVLE_15q25.3a ### chr15 rmsk gene 84702938 84706940 . + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3167"; model_cov "2365"; model_pct "41.7"; chr15 rmsk exon 84702938 84704398 5363 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "-1130"; repStart "3018"; chr15 rmsk exon 84705339 84705572 3182 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "4756"; repFamily "ERVL"; repLeft "-911"; repStart "4531"; chr15 rmsk exon 84705863 84705907 3182 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "4791"; repFamily "ERVL"; repLeft "-876"; repStart "4757"; chr15 rmsk exon 84706207 84706635 3182 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "5269"; repFamily "ERVL"; repLeft "-398"; repStart "4792"; chr15 rmsk exon 84706633 84706733 411 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5556"; chr15 rmsk exon 84706745 84706940 975 + . gene_id "ERVLE_15q25.3a"; transcript_id "ERVLE_15q25.3a"; locus "ERVLE_15q25.3a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3167"; repClass "LTR"; repEnd "212"; repFamily "ERVL"; repLeft "-416"; repStart "10"; ### ERVLE_15q25.3b ### chr15 rmsk gene 84871194 84873485 . - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3168"; model_cov "1632"; model_pct "28.8"; chr15 rmsk exon 84871194 84871264 299 - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3168"; repClass "LTR"; repEnd "5183"; repFamily "ERVL"; repLeft "5062"; repStart "-484"; chr15 rmsk exon 84871276 84871537 448 - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3168"; repClass "LTR"; repEnd "5062"; repFamily "ERVL"; repLeft "4769"; repStart "-605"; chr15 rmsk exon 84872014 84872720 1012 - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3168"; repClass "LTR"; repEnd "3560"; repFamily "ERVL"; repLeft "2800"; repStart "-2107"; chr15 rmsk exon 84872760 84872883 298 - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3168"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "1709"; repStart "-3834"; chr15 rmsk exon 84873164 84873485 439 - . gene_id "ERVLE_15q25.3b"; transcript_id "ERVLE_15q25.3b"; locus "ERVLE_15q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3168"; repClass "LTR"; repEnd "1294"; repFamily "ERVL"; repLeft "960"; repStart "-4373"; ### ERVLB4_15q25.3a ### chr15 rmsk gene 86826690 86830863 . + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1525"; model_cov "2287"; model_pct "40.0"; chr15 rmsk exon 86826690 86826991 717 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "1600"; repFamily "ERVL"; repLeft "-4114"; repStart "1306"; chr15 rmsk exon 86826996 86827291 996 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "-3632"; repStart "1775"; chr15 rmsk exon 86827522 86827935 996 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "2517"; repFamily "ERVL"; repLeft "-3197"; repStart "2083"; chr15 rmsk exon 86829007 86829561 1156 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "-2421"; repStart "2712"; chr15 rmsk exon 86829594 86829755 330 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "4251"; repFamily "ERVL"; repLeft "-1463"; repStart "4086"; chr15 rmsk exon 86830390 86830863 790 + . gene_id "ERVLB4_15q25.3a"; transcript_id "ERVLB4_15q25.3a"; locus "ERVLB4_15q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1525"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "-960"; repStart "4248"; ### ERVLB4_15q25.3b ### chr15 rmsk gene 86833211 86834366 . + . gene_id "ERVLB4_15q25.3b"; transcript_id "ERVLB4_15q25.3b"; locus "ERVLB4_15q25.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1526"; model_cov "809"; model_pct "14.2"; chr15 rmsk exon 86833211 86833280 938 + . gene_id "ERVLB4_15q25.3b"; transcript_id "ERVLB4_15q25.3b"; locus "ERVLB4_15q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1526"; repClass "LTR"; repEnd "4539"; repFamily "ERVL"; repLeft "-1175"; repStart "4473"; chr15 rmsk exon 86833636 86834366 938 + . gene_id "ERVLB4_15q25.3b"; transcript_id "ERVLB4_15q25.3b"; locus "ERVLB4_15q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1526"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "-431"; repStart "4540"; ### HERVH_15q25.3a ### chr15 rmsk gene 87041969 87045508 . + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1061"; model_cov "3188"; model_pct "41.3"; chr15 rmsk exon 87041969 87043066 7508 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1911"; chr15 rmsk exon 87043046 87043899 5792 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr15 rmsk exon 87043902 87044488 2763 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr15 rmsk exon 87044532 87044736 1383 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5615"; chr15 rmsk exon 87044737 87045106 2207 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr15 rmsk exon 87045107 87045508 2572 + . gene_id "HERVH_15q25.3a"; transcript_id "HERVH_15q25.3a"; locus "HERVH_15q25.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1061"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### ERVLE_15q25.3c ### chr15 rmsk gene 87303041 87304224 . - . gene_id "ERVLE_15q25.3c"; transcript_id "ERVLE_15q25.3c"; locus "ERVLE_15q25.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3170"; model_cov "1025"; model_pct "18.1"; chr15 rmsk exon 87303041 87303676 914 - . gene_id "ERVLE_15q25.3c"; transcript_id "ERVLE_15q25.3c"; locus "ERVLE_15q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3170"; repClass "LTR"; repEnd "5327"; repFamily "ERVL"; repLeft "4596"; repStart "-340"; chr15 rmsk exon 87303819 87303926 442 - . gene_id "ERVLE_15q25.3c"; transcript_id "ERVLE_15q25.3c"; locus "ERVLE_15q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3170"; repClass "LTR"; repEnd "4508"; repFamily "ERVL"; repLeft "4402"; repStart "-1159"; chr15 rmsk exon 87304042 87304224 630 - . gene_id "ERVLE_15q25.3c"; transcript_id "ERVLE_15q25.3c"; locus "ERVLE_15q25.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3170"; repClass "LTR"; repEnd "4263"; repFamily "ERVL"; repLeft "4075"; repStart "-1404"; ### HUERSP1_15q25.3 ### chr15 rmsk gene 87663157 87669568 . + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0181"; model_cov "5123"; model_pct "81.8"; chr15 rmsk exon 87663157 87663172 4911 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "536"; repFamily "ERV1"; repLeft "-155"; repStart "536"; chr15 rmsk exon 87663483 87663651 4911 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "536"; chr15 rmsk exon 87663652 87664835 7630 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "1229"; repFamily "ERV1"; repLeft "-5034"; repStart "1"; chr15 rmsk exon 87664826 87667020 19089 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-1647"; repStart "2366"; chr15 rmsk exon 87667279 87668888 18489 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "4617"; chr15 rmsk exon 87668889 87669568 5478 + . gene_id "HUERSP1_15q25.3"; transcript_id "HUERSP1_15q25.3"; locus "HUERSP1_15q25.3"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0181"; repClass "LTR"; repEnd "689"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_15q25.3b ### chr15 rmsk gene 87831107 87837022 . + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1062"; model_cov "5061"; model_pct "65.6"; chr15 rmsk exon 87831107 87831555 3673 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 87831558 87834815 17326 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr15 rmsk exon 87834806 87835305 3413 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr15 rmsk exon 87835308 87835964 4313 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 87835966 87836194 1392 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 87836193 87836572 2630 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr15 rmsk exon 87836573 87837022 3410 + . gene_id "HERVH_15q25.3b"; transcript_id "HERVH_15q25.3b"; locus "HERVH_15q25.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1062"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_15q25.3d ### chr15 rmsk gene 88414731 88415563 . + . gene_id "ERVLE_15q25.3d"; transcript_id "ERVLE_15q25.3d"; locus "ERVLE_15q25.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3172"; model_cov "691"; model_pct "12.2"; chr15 rmsk exon 88414731 88415159 506 + . gene_id "ERVLE_15q25.3d"; transcript_id "ERVLE_15q25.3d"; locus "ERVLE_15q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3172"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-5214"; repStart "18"; chr15 rmsk exon 88415321 88415563 519 + . gene_id "ERVLE_15q25.3d"; transcript_id "ERVLE_15q25.3d"; locus "ERVLE_15q25.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3172"; repClass "LTR"; repEnd "904"; repFamily "ERVL"; repLeft "-4763"; repStart "648"; ### ERVLE_15q25.3e ### chr15 rmsk gene 88419006 88425237 . + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3173"; model_cov "3961"; model_pct "69.9"; chr15 rmsk exon 88419006 88419975 2081 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "1998"; repFamily "ERVL"; repLeft "-3669"; repStart "1006"; chr15 rmsk exon 88420213 88420480 4689 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "2563"; repFamily "ERVL"; repLeft "-3104"; repStart "2291"; chr15 rmsk exon 88420889 88421191 4689 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "-2767"; repStart "2564"; chr15 rmsk exon 88421505 88422143 4689 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "3581"; repFamily "ERVL"; repLeft "-2086"; repStart "2901"; chr15 rmsk exon 88422266 88422934 4689 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "-1344"; repStart "3582"; chr15 rmsk exon 88423686 88423980 4689 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1035"; repStart "4324"; chr15 rmsk exon 88424003 88424024 1802 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "-961"; repStart "4687"; chr15 rmsk exon 88424321 88424649 1802 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "5074"; repFamily "ERVL"; repLeft "-593"; repStart "4707"; chr15 rmsk exon 88424968 88425237 1802 + . gene_id "ERVLE_15q25.3e"; transcript_id "ERVLE_15q25.3e"; locus "ERVLE_15q25.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3173"; repClass "LTR"; repEnd "5321"; repFamily "ERVL"; repLeft "-346"; repStart "5075"; ### HERVS71_15q26.1 ### chr15 rmsk gene 88538134 88546230 . + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0040"; model_cov "7574"; model_pct "84.4"; chr15 rmsk exon 88538134 88538641 3776 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 88538642 88540551 16142 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "1951"; repFamily "ERV1"; repLeft "-7027"; repStart "1"; chr15 rmsk exon 88541520 88543840 16142 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "5667"; repFamily "ERV1"; repLeft "-3311"; repStart "1952"; chr15 rmsk exon 88543835 88544782 7075 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "7039"; repFamily "ERV1"; repLeft "-1939"; repStart "6090"; chr15 rmsk exon 88544779 88545417 4030 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "7141"; chr15 rmsk exon 88545415 88545721 2275 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr15 rmsk exon 88545722 88546230 3848 + . gene_id "HERVS71_15q26.1"; transcript_id "HERVS71_15q26.1"; locus "HERVS71_15q26.1"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0040"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_15q26.1a ### chr15 rmsk gene 88547268 88551301 . - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1063"; model_cov "3592"; model_pct "46.6"; chr15 rmsk exon 88547268 88547718 3536 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr15 rmsk exon 88547719 88548094 2625 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr15 rmsk exon 88548093 88548316 1309 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr15 rmsk exon 88548318 88548979 4322 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr15 rmsk exon 88548982 88549835 6306 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr15 rmsk exon 88549815 88551301 10572 - . gene_id "HERVH_15q26.1a"; transcript_id "HERVH_15q26.1a"; locus "HERVH_15q26.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1063"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1527"; repStart "-4718"; ### HERVH_15q26.1b ### chr15 rmsk gene 88560270 88562263 . - . gene_id "HERVH_15q26.1b"; transcript_id "HERVH_15q26.1b"; locus "HERVH_15q26.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1064"; model_cov "1529"; model_pct "19.8"; chr15 rmsk exon 88560270 88561809 10726 - . gene_id "HERVH_15q26.1b"; transcript_id "HERVH_15q26.1b"; locus "HERVH_15q26.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1064"; repClass "LTR"; repEnd "1530"; repFamily "ERV1"; repLeft "1"; repStart "-6183"; chr15 rmsk exon 88561812 88562263 3489 - . gene_id "HERVH_15q26.1b"; transcript_id "HERVH_15q26.1b"; locus "HERVH_15q26.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1064"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_15q26.1a ### chr15 rmsk gene 88920334 88930129 . + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0182"; model_cov "7202"; model_pct "100.0"; chr15 rmsk exon 88920334 88920868 4485 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "-161"; repStart "1"; chr15 rmsk exon 88921183 88921278 4485 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "-73"; repStart "531"; chr15 rmsk exon 88921279 88922586 19139 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "1518"; repFamily "ERV1"; repLeft "-4745"; repStart "128"; chr15 rmsk exon 88922897 88923789 19139 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "2313"; repFamily "ERV1"; repLeft "-3950"; repStart "1519"; chr15 rmsk exon 88923825 88924209 19139 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "2711"; repFamily "ERV1"; repLeft "-3552"; repStart "2314"; chr15 rmsk exon 88924489 88924902 19139 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3317"; repStart "2057"; chr15 rmsk exon 88925650 88926121 22869 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "3495"; repFamily "ERV1"; repLeft "-2768"; repStart "2448"; chr15 rmsk exon 88926424 88927840 22869 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "4988"; repFamily "ERV1"; repLeft "-1275"; repStart "3576"; chr15 rmsk exon 88928147 88929446 22869 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "-1"; repStart "4989"; chr15 rmsk exon 88929448 88930129 5227 + . gene_id "HUERSP1_15q26.1a"; transcript_id "HUERSP1_15q26.1a"; locus "HUERSP1_15q26.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0182"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### MER4_15q26.1a ### chr15 rmsk gene 88937583 88939430 . + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0702"; model_cov "781"; model_pct "11.8"; chr15 rmsk exon 88937583 88937771 825 + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0702"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "-6384"; repStart "1"; chr15 rmsk exon 88938210 88938445 1385 + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0702"; repClass "LTR"; repEnd "434"; repFamily "ERV1"; repLeft "-6164"; repStart "198"; chr15 rmsk exon 88938746 88938919 1385 + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0702"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "-5975"; repStart "435"; chr15 rmsk exon 88939316 88939365 330 + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0702"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "637"; chr15 rmsk exon 88939334 88939430 427 + . gene_id "MER4_15q26.1a"; transcript_id "MER4_15q26.1a"; locus "MER4_15q26.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0702"; repClass "LTR"; repEnd "-644"; repFamily "ERV1"; repLeft "-7242"; repStart "-739"; ### MER4_15q26.1b ### chr15 rmsk gene 88943320 88944922 . + . gene_id "MER4_15q26.1b"; transcript_id "MER4_15q26.1b"; locus "MER4_15q26.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0703"; model_cov "921"; model_pct "14.0"; chr15 rmsk exon 88943320 88943892 3233 + . gene_id "MER4_15q26.1b"; transcript_id "MER4_15q26.1b"; locus "MER4_15q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0703"; repClass "LTR"; repEnd "2136"; repFamily "ERV1"; repLeft "-4462"; repStart "1562"; chr15 rmsk exon 88944201 88944390 3233 + . gene_id "MER4_15q26.1b"; transcript_id "MER4_15q26.1b"; locus "MER4_15q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0703"; repClass "LTR"; repEnd "2363"; repFamily "ERV1"; repLeft "-4235"; repStart "2137"; chr15 rmsk exon 88944692 88944922 3233 + . gene_id "MER4_15q26.1b"; transcript_id "MER4_15q26.1b"; locus "MER4_15q26.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0703"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "2364"; ### HML3_15q26.1 ### chr15 rmsk gene 89233714 89240303 . - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0194"; model_cov "5291"; model_pct "87.9"; chr15 rmsk exon 89233714 89234223 4022 - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0194"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr15 rmsk exon 89234227 89236678 38025 - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0194"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "3564"; repStart "-2"; chr15 rmsk exon 89236985 89239190 38025 - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0194"; repClass "LTR"; repEnd "3563"; repFamily "ERVK"; repLeft "1349"; repStart "-2458"; chr15 rmsk exon 89239181 89239793 4693 - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0194"; repClass "LTR"; repEnd "623"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr15 rmsk exon 89239794 89240303 4066 - . gene_id "HML3_15q26.1"; transcript_id "HML3_15q26.1"; locus "HML3_15q26.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0194"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV4_15q26.1 ### chr15 rmsk gene 89462545 89469801 . + . gene_id "HERV4_15q26.1"; transcript_id "HERV4_15q26.1"; locus "HERV4_15q26.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0115"; model_cov "6536"; model_pct "100.0"; chr15 rmsk exon 89462545 89462974 1836 + . gene_id "HERV4_15q26.1"; transcript_id "HERV4_15q26.1"; locus "HERV4_15q26.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0115"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr15 rmsk exon 89462975 89469391 44365 + . gene_id "HERV4_15q26.1"; transcript_id "HERV4_15q26.1"; locus "HERV4_15q26.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0115"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 89469392 89469801 1645 + . gene_id "HERV4_15q26.1"; transcript_id "HERV4_15q26.1"; locus "HERV4_15q26.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0115"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_15q26.1c ### chr15 rmsk gene 90133293 90138300 . + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1065"; model_cov "4666"; model_pct "60.5"; chr15 rmsk exon 90133293 90133487 2587 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-1"; repStart "206"; chr15 rmsk exon 90133488 90134493 9928 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "1159"; repFamily "ERV1"; repLeft "-6554"; repStart "1"; chr15 rmsk exon 90134655 90136238 9928 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1160"; chr15 rmsk exon 90136233 90136322 522 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "3229"; repFamily "ERV1"; repLeft "-4484"; repStart "3140"; chr15 rmsk exon 90136321 90136930 4069 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4539"; chr15 rmsk exon 90136922 90137346 2241 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5590"; chr15 rmsk exon 90137340 90137913 3350 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr15 rmsk exon 90137914 90138300 2592 + . gene_id "HERVH_15q26.1c"; transcript_id "HERVH_15q26.1c"; locus "HERVH_15q26.1c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1065"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_15q26.1a ### chr15 rmsk gene 91232546 91235088 . + . gene_id "ERVLB4_15q26.1a"; transcript_id "ERVLB4_15q26.1a"; locus "ERVLB4_15q26.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1528"; model_cov "2196"; model_pct "38.4"; chr15 rmsk exon 91232546 91232654 823 + . gene_id "ERVLB4_15q26.1a"; transcript_id "ERVLB4_15q26.1a"; locus "ERVLB4_15q26.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1528"; repClass "LTR"; repEnd "109"; repFamily "ERVL"; repLeft "-5605"; repStart "1"; chr15 rmsk exon 91233137 91235088 8608 + . gene_id "ERVLB4_15q26.1a"; transcript_id "ERVLB4_15q26.1a"; locus "ERVLB4_15q26.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1528"; repClass "LTR"; repEnd "2171"; repFamily "ERVL"; repLeft "-3543"; repStart "83"; ### ERVLE_15q26.1a ### chr15 rmsk gene 91391425 91393208 . + . gene_id "ERVLE_15q26.1a"; transcript_id "ERVLE_15q26.1a"; locus "ERVLE_15q26.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3174"; model_cov "1775"; model_pct "31.3"; chr15 rmsk exon 91391425 91392409 1454 + . gene_id "ERVLE_15q26.1a"; transcript_id "ERVLE_15q26.1a"; locus "ERVLE_15q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3174"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "-1505"; repStart "3121"; chr15 rmsk exon 91392437 91392618 588 + . gene_id "ERVLE_15q26.1a"; transcript_id "ERVLE_15q26.1a"; locus "ERVLE_15q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3174"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "-1230"; repStart "4230"; chr15 rmsk exon 91392677 91392983 904 + . gene_id "ERVLE_15q26.1a"; transcript_id "ERVLE_15q26.1a"; locus "ERVLE_15q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3174"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-749"; repStart "4598"; chr15 rmsk exon 91393001 91393208 654 + . gene_id "ERVLE_15q26.1a"; transcript_id "ERVLE_15q26.1a"; locus "ERVLE_15q26.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3174"; repClass "LTR"; repEnd "5168"; repFamily "ERVL"; repLeft "-499"; repStart "4961"; ### ERVLE_15q26.1b ### chr15 rmsk gene 91515675 91517679 . - . gene_id "ERVLE_15q26.1b"; transcript_id "ERVLE_15q26.1b"; locus "ERVLE_15q26.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3175"; model_cov "1498"; model_pct "26.4"; chr15 rmsk exon 91515675 91516141 1498 - . gene_id "ERVLE_15q26.1b"; transcript_id "ERVLE_15q26.1b"; locus "ERVLE_15q26.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3175"; repClass "LTR"; repEnd "4911"; repFamily "ERVL"; repLeft "4428"; repStart "-756"; chr15 rmsk exon 91516450 91516544 1498 - . gene_id "ERVLE_15q26.1b"; transcript_id "ERVLE_15q26.1b"; locus "ERVLE_15q26.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3175"; repClass "LTR"; repEnd "4427"; repFamily "ERVL"; repLeft "4335"; repStart "-1240"; chr15 rmsk exon 91516740 91517469 1765 - . gene_id "ERVLE_15q26.1b"; transcript_id "ERVLE_15q26.1b"; locus "ERVLE_15q26.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3175"; repClass "LTR"; repEnd "2784"; repFamily "ERVL"; repLeft "2055"; repStart "-2883"; chr15 rmsk exon 91517490 91517679 558 - . gene_id "ERVLE_15q26.1b"; transcript_id "ERVLE_15q26.1b"; locus "ERVLE_15q26.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3175"; repClass "LTR"; repEnd "2006"; repFamily "ERVL"; repLeft "1812"; repStart "-3661"; ### ERVLB4_15q26.1b ### chr15 rmsk gene 91630261 91632467 . + . gene_id "ERVLB4_15q26.1b"; transcript_id "ERVLB4_15q26.1b"; locus "ERVLB4_15q26.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1529"; model_cov "1423"; model_pct "24.9"; chr15 rmsk exon 91630261 91630427 415 + . gene_id "ERVLB4_15q26.1b"; transcript_id "ERVLB4_15q26.1b"; locus "ERVLB4_15q26.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1529"; repClass "LTR"; repEnd "3732"; repFamily "ERVL"; repLeft "-1982"; repStart "3565"; chr15 rmsk exon 91630811 91631221 1041 + . gene_id "ERVLB4_15q26.1b"; transcript_id "ERVLB4_15q26.1b"; locus "ERVLB4_15q26.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1529"; repClass "LTR"; repEnd "4159"; repFamily "ERVL"; repLeft "-1555"; repStart "3780"; chr15 rmsk exon 91631535 91631754 1041 + . gene_id "ERVLB4_15q26.1b"; transcript_id "ERVLB4_15q26.1b"; locus "ERVLB4_15q26.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1529"; repClass "LTR"; repEnd "4394"; repFamily "ERVL"; repLeft "-1320"; repStart "4160"; chr15 rmsk exon 91631862 91632467 1151 + . gene_id "ERVLB4_15q26.1b"; transcript_id "ERVLB4_15q26.1b"; locus "ERVLB4_15q26.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1529"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "-439"; repStart "4632"; ### HERV9_15q26.1 ### chr15 rmsk gene 92210712 92214977 . + . gene_id "HERV9_15q26.1"; transcript_id "HERV9_15q26.1"; locus "HERV9_15q26.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0166"; model_cov "3661"; model_pct "43.4"; chr15 rmsk exon 92210712 92214369 29988 + . gene_id "HERV9_15q26.1"; transcript_id "HERV9_15q26.1"; locus "HERV9_15q26.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0166"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "4775"; chr15 rmsk exon 92214370 92214977 4241 + . gene_id "HERV9_15q26.1"; transcript_id "HERV9_15q26.1"; locus "HERV9_15q26.1"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0166"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "-232"; repStart "1"; ### HUERSP1_15q26.1b ### chr15 rmsk gene 92235575 92237509 . + . gene_id "HUERSP1_15q26.1b"; transcript_id "HUERSP1_15q26.1b"; locus "HUERSP1_15q26.1b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0183"; model_cov "1302"; model_pct "20.8"; chr15 rmsk exon 92235575 92236502 3897 + . gene_id "HUERSP1_15q26.1b"; transcript_id "HUERSP1_15q26.1b"; locus "HUERSP1_15q26.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0183"; repClass "LTR"; repEnd "5719"; repFamily "ERV1"; repLeft "-544"; repStart "4815"; chr15 rmsk exon 92236492 92236903 2033 + . gene_id "HUERSP1_15q26.1b"; transcript_id "HUERSP1_15q26.1b"; locus "HUERSP1_15q26.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0183"; repClass "LTR"; repEnd "6259"; repFamily "ERV1"; repLeft "-4"; repStart "5861"; chr15 rmsk exon 92236908 92237509 2966 + . gene_id "HUERSP1_15q26.1b"; transcript_id "HUERSP1_15q26.1b"; locus "HUERSP1_15q26.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0183"; repClass "LTR"; repEnd "581"; repFamily "ERV1"; repLeft "-110"; repStart "1"; ### ERVLE_15q26.1c ### chr15 rmsk gene 92276388 92279430 . + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3177"; model_cov "2259"; model_pct "39.9"; chr15 rmsk exon 92276388 92276898 649 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "1918"; repFamily "ERVL"; repLeft "-3749"; repStart "1410"; chr15 rmsk exon 92276969 92277399 812 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "-2956"; repStart "2254"; chr15 rmsk exon 92277398 92277630 592 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "-2118"; repStart "3310"; chr15 rmsk exon 92277666 92278072 1292 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "4080"; repFamily "ERVL"; repLeft "-1587"; repStart "3644"; chr15 rmsk exon 92278148 92278229 288 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "4577"; repFamily "ERVL"; repLeft "-1090"; repStart "4493"; chr15 rmsk exon 92278867 92279208 505 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "5256"; repFamily "ERVL"; repLeft "-411"; repStart "4908"; chr15 rmsk exon 92279246 92279430 395 + . gene_id "ERVLE_15q26.1c"; transcript_id "ERVLE_15q26.1c"; locus "ERVLE_15q26.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3177"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "-410"; repStart "5070"; ### HERVW_15q26.1 ### chr15 rmsk gene 92298147 92302200 . + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0261"; model_cov "3290"; model_pct "38.1"; chr15 rmsk exon 92298147 92298670 4217 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chr15 rmsk exon 92298671 92299668 7622 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "-7589"; repStart "2"; chr15 rmsk exon 92299640 92301562 16396 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4093"; chr15 rmsk exon 92301556 92301594 258 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr15 rmsk exon 92301585 92301875 2351 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr15 rmsk exon 92301876 92302200 2685 + . gene_id "HERVW_15q26.1"; transcript_id "HERVW_15q26.1"; locus "HERVW_15q26.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0261"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVH_15q26.1d ### chr15 rmsk gene 92511307 92517425 . + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1066"; model_cov "5263"; model_pct "68.2"; chr15 rmsk exon 92511307 92511769 3203 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 92511772 92515753 25341 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr15 rmsk exon 92515756 92516422 4454 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 92516424 92516640 1401 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 92516639 92517017 2357 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr15 rmsk exon 92517018 92517425 2983 + . gene_id "HERVH_15q26.1d"; transcript_id "HERVH_15q26.1d"; locus "HERVH_15q26.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1066"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_15q26.1 ### chr15 rmsk gene 92552094 92553707 . + . gene_id "ERVL_15q26.1"; transcript_id "ERVL_15q26.1"; locus "ERVL_15q26.1"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0394"; model_cov "1051"; model_pct "18.3"; chr15 rmsk exon 92552094 92552134 231 + . gene_id "ERVL_15q26.1"; transcript_id "ERVL_15q26.1"; locus "ERVL_15q26.1"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0394"; repClass "LTR"; repEnd "41"; repFamily "ERVL"; repLeft "-474"; repStart "1"; chr15 rmsk exon 92552135 92552475 5616 + . gene_id "ERVL_15q26.1"; transcript_id "ERVL_15q26.1"; locus "ERVL_15q26.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0394"; repClass "LTR"; repEnd "5044"; repFamily "ERVL"; repLeft "-713"; repStart "4705"; chr15 rmsk exon 92552616 92553274 5616 + . gene_id "ERVL_15q26.1"; transcript_id "ERVL_15q26.1"; locus "ERVL_15q26.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0394"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5045"; chr15 rmsk exon 92553275 92553707 1748 + . gene_id "ERVL_15q26.1"; transcript_id "ERVL_15q26.1"; locus "ERVL_15q26.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0394"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL74_15q26.1 ### chr15 rmsk gene 93093507 93097816 . - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0100"; model_cov "3347"; model_pct "58.9"; chr15 rmsk exon 93093507 93094134 1814 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "4595"; repStart "-464"; chr15 rmsk exon 93094129 93094248 521 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "4026"; repFamily "ERVL"; repLeft "3902"; repStart "-1659"; chr15 rmsk exon 93094248 93095417 5314 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "2293"; repStart "-2042"; chr15 rmsk exon 93095740 93096461 5324 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "2292"; repFamily "ERVL"; repLeft "1489"; repStart "-3393"; chr15 rmsk exon 93096758 93097167 5324 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "1488"; repFamily "ERVL"; repLeft "1076"; repStart "-4197"; chr15 rmsk exon 93097775 93097816 5324 - . gene_id "HERVL74_15q26.1"; transcript_id "HERVL74_15q26.1"; locus "HERVL74_15q26.1"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0100"; repClass "LTR"; repEnd "1075"; repFamily "ERVL"; repLeft "1043"; repStart "-4610"; ### ERV316A3_15q26.1 ### chr15 rmsk gene 93637806 93638792 . - . gene_id "ERV316A3_15q26.1"; transcript_id "ERV316A3_15q26.1"; locus "ERV316A3_15q26.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2400"; model_cov "950"; model_pct "18.2"; chr15 rmsk exon 93637806 93638792 1953 - . gene_id "ERV316A3_15q26.1"; transcript_id "ERV316A3_15q26.1"; locus "ERV316A3_15q26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2400"; repClass "LTR"; repEnd "4679"; repFamily "ERVL"; repLeft "3729"; repStart "-547"; ### ERVLE_15q26.2a ### chr15 rmsk gene 93909984 93910802 . + . gene_id "ERVLE_15q26.2a"; transcript_id "ERVLE_15q26.2a"; locus "ERVLE_15q26.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3178"; model_cov "851"; model_pct "15.0"; chr15 rmsk exon 93909984 93910802 1057 + . gene_id "ERVLE_15q26.2a"; transcript_id "ERVLE_15q26.2a"; locus "ERVLE_15q26.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3178"; repClass "LTR"; repEnd "3289"; repFamily "ERVL"; repLeft "-2378"; repStart "2438"; ### HERVL_15q26.2a ### chr15 rmsk gene 94492346 94493815 . + . gene_id "HERVL_15q26.2a"; transcript_id "HERVL_15q26.2a"; locus "HERVL_15q26.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1127"; model_cov "1306"; model_pct "23.1"; chr15 rmsk exon 94492346 94493653 9565 + . gene_id "HERVL_15q26.2a"; transcript_id "HERVL_15q26.2a"; locus "HERVL_15q26.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1127"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4348"; chr15 rmsk exon 94493654 94493815 1183 + . gene_id "HERVL_15q26.2a"; transcript_id "HERVL_15q26.2a"; locus "HERVL_15q26.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1127"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "-285"; repStart "1"; ### ERVLE_15q26.2b ### chr15 rmsk gene 94534830 94535552 . - . gene_id "ERVLE_15q26.2b"; transcript_id "ERVLE_15q26.2b"; locus "ERVLE_15q26.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3180"; model_cov "786"; model_pct "13.9"; chr15 rmsk exon 94534830 94535552 2559 - . gene_id "ERVLE_15q26.2b"; transcript_id "ERVLE_15q26.2b"; locus "ERVLE_15q26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3180"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "4876"; repStart "-5"; ### HERVH_15q26.2b ### chr15 rmsk gene 94750749 94760376 . + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_1068"; model_cov "4908"; model_pct "63.6"; chr15 rmsk exon 94750749 94751160 2795 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 94751163 94754174 20777 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr15 rmsk exon 94754174 94754316 915 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr15 rmsk exon 94754316 94754808 3588 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr15 rmsk exon 94754811 94755471 4558 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 94755473 94755685 1410 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 94755685 94756059 2338 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr15 rmsk exon 94756060 94756464 2557 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 94756466 94757889 9699 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1608"; chr15 rmsk exon 94757889 94758719 5927 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr15 rmsk exon 94758722 94759378 4255 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 94759380 94759595 1430 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 94759596 94759964 2217 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr15 rmsk exon 94759965 94760376 2745 + . gene_id "HERVH_15q26.2b"; transcript_id "HERVH_15q26.2b"; locus "HERVH_15q26.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1068"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_15q26.2 ### chr15 rmsk gene 94876321 94880341 . - . gene_id "MER61_15q26.2"; transcript_id "MER61_15q26.2"; locus "MER61_15q26.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0331"; model_cov "4356"; model_pct "83.5"; chr15 rmsk exon 94876321 94876367 1532 - . gene_id "MER61_15q26.2"; transcript_id "MER61_15q26.2"; locus "MER61_15q26.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0331"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "5170"; repStart "-1"; chr15 rmsk exon 94876805 94878987 10083 - . gene_id "MER61_15q26.2"; transcript_id "MER61_15q26.2"; locus "MER61_15q26.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0331"; repClass "LTR"; repEnd "2721"; repFamily "ERV1"; repLeft "-93"; repStart "-2496"; chr15 rmsk exon 94878980 94880182 3205 - . gene_id "MER61_15q26.2"; transcript_id "MER61_15q26.2"; locus "MER61_15q26.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0331"; repClass "LTR"; repEnd "2592"; repFamily "ERV1"; repLeft "1247"; repStart "-2625"; chr15 rmsk exon 94880192 94880341 749 - . gene_id "MER61_15q26.2"; transcript_id "MER61_15q26.2"; locus "MER61_15q26.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0331"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "261"; repStart "-4805"; ### HERVL_15q26.2b ### chr15 rmsk gene 95202489 95205704 . + . gene_id "HERVL_15q26.2b"; transcript_id "HERVL_15q26.2b"; locus "HERVL_15q26.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1128"; model_cov "2674"; model_pct "47.3"; chr15 rmsk exon 95202489 95205155 19599 + . gene_id "HERVL_15q26.2b"; transcript_id "HERVL_15q26.2b"; locus "HERVL_15q26.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1128"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2980"; chr15 rmsk exon 95205156 95205704 1985 + . gene_id "HERVL_15q26.2b"; transcript_id "HERVL_15q26.2b"; locus "HERVL_15q26.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1128"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERVL74_15q26.2 ### chr15 rmsk gene 95508532 95511113 . + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0101"; model_cov "2220"; model_pct "39.1"; chr15 rmsk exon 95508532 95509528 4402 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "-2356"; repStart "2307"; chr15 rmsk exon 95509534 95509698 871 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "3653"; repFamily "ERVL"; repLeft "-2032"; repStart "3491"; chr15 rmsk exon 95509691 95509849 852 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "4071"; repFamily "ERVL"; repLeft "-1614"; repStart "3913"; chr15 rmsk exon 95509828 95509943 373 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "4687"; repFamily "ERVL"; repLeft "-998"; repStart "4578"; chr15 rmsk exon 95509953 95510521 1315 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "5251"; repFamily "ERVL"; repLeft "-434"; repStart "4646"; chr15 rmsk exon 95510511 95510677 595 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "5540"; repFamily "ERVL"; repLeft "-145"; repStart "5376"; chr15 rmsk exon 95510679 95511113 1526 + . gene_id "HERVL74_15q26.2"; transcript_id "HERVL74_15q26.2"; locus "HERVL74_15q26.2"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0101"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "-137"; repStart "43"; ### ERV316A3_15q26.2a ### chr15 rmsk gene 95728861 95729950 . + . gene_id "ERV316A3_15q26.2a"; transcript_id "ERV316A3_15q26.2a"; locus "ERV316A3_15q26.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2402"; model_cov "663"; model_pct "12.7"; chr15 rmsk exon 95728861 95729012 660 + . gene_id "ERV316A3_15q26.2a"; transcript_id "ERV316A3_15q26.2a"; locus "ERV316A3_15q26.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2402"; repClass "LTR"; repEnd "3016"; repFamily "ERVL"; repLeft "-2210"; repStart "2861"; chr15 rmsk exon 95729016 95729527 875 + . gene_id "ERV316A3_15q26.2a"; transcript_id "ERV316A3_15q26.2a"; locus "ERV316A3_15q26.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2402"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "4717"; chr15 rmsk exon 95729529 95729950 760 + . gene_id "ERV316A3_15q26.2a"; transcript_id "ERV316A3_15q26.2a"; locus "ERV316A3_15q26.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2402"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_15q26.2b ### chr15 rmsk gene 95814469 95816820 . - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2404"; model_cov "1480"; model_pct "28.3"; chr15 rmsk exon 95814469 95814549 277 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "3640"; repStart "-1512"; chr15 rmsk exon 95814539 95814857 1063 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "3677"; repFamily "ERVL"; repLeft "3353"; repStart "-1549"; chr15 rmsk exon 95814875 95815186 478 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "3315"; repFamily "ERVL"; repLeft "2994"; repStart "-1911"; chr15 rmsk exon 95815526 95816192 796 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "811"; repStart "-3654"; chr15 rmsk exon 95816227 95816265 727 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "319"; repStart "-65"; chr15 rmsk exon 95816465 95816820 1193 - . gene_id "ERV316A3_15q26.2b"; transcript_id "ERV316A3_15q26.2b"; locus "ERV316A3_15q26.2b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2404"; repClass "LTR"; repEnd "318"; repFamily "ERVL"; repLeft "-57"; repStart "-104"; ### ERVLE_15q26.2c ### chr15 rmsk gene 96826854 96830061 . - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3181"; model_cov "2444"; model_pct "43.1"; chr15 rmsk exon 96826854 96826964 376 - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3181"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "5162"; repStart "-391"; chr15 rmsk exon 96826979 96827669 1767 - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3181"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "4371"; repStart "-582"; chr15 rmsk exon 96827710 96828306 2872 - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3181"; repClass "LTR"; repEnd "4287"; repFamily "ERVL"; repLeft "3786"; repStart "-1380"; chr15 rmsk exon 96828606 96829445 2872 - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3181"; repClass "LTR"; repEnd "3344"; repFamily "ERVL"; repLeft "2476"; repStart "-2323"; chr15 rmsk exon 96829805 96830061 477 - . gene_id "ERVLE_15q26.2c"; transcript_id "ERVLE_15q26.2c"; locus "ERVLE_15q26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3181"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "105"; repStart "-5315"; ### HERVH_15q26.2a ### chr15 rmsk gene 96871837 96877667 . - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1070"; model_cov "4891"; model_pct "63.4"; chr15 rmsk exon 96871837 96872314 3317 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr15 rmsk exon 96872315 96872687 2499 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr15 rmsk exon 96872686 96872903 1407 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr15 rmsk exon 96873005 96873510 3536 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "4993"; repFamily "ERV1"; repLeft "4488"; repStart "-2720"; chr15 rmsk exon 96873513 96874002 3469 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3506"; repStart "-3720"; chr15 rmsk exon 96874008 96877214 20085 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr15 rmsk exon 96877217 96877667 3632 - . gene_id "HERVH_15q26.2a"; transcript_id "HERVH_15q26.2a"; locus "HERVH_15q26.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1070"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_15q26.2d ### chr15 rmsk gene 96923730 96928563 . + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3182"; model_cov "3521"; model_pct "62.1"; chr15 rmsk exon 96923730 96923839 287 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-5115"; repStart "445"; chr15 rmsk exon 96924475 96924881 2476 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "-4235"; repStart "1016"; chr15 rmsk exon 96925203 96926818 2476 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "3445"; repFamily "ERVL"; repLeft "-2222"; repStart "1874"; chr15 rmsk exon 96926839 96927114 507 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "3454"; repFamily "ERVL"; repLeft "-2213"; repStart "3090"; chr15 rmsk exon 96927324 96927419 303 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "3870"; repFamily "ERVL"; repLeft "-1797"; repStart "3773"; chr15 rmsk exon 96927588 96928048 803 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "4572"; repFamily "ERVL"; repLeft "-1095"; repStart "4101"; chr15 rmsk exon 96928070 96928563 1130 + . gene_id "ERVLE_15q26.2d"; transcript_id "ERVLE_15q26.2d"; locus "ERVLE_15q26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3182"; repClass "LTR"; repEnd "5256"; repFamily "ERVL"; repLeft "-411"; repStart "4761"; ### ERVLB4_15q26.2a ### chr15 rmsk gene 97026043 97030571 . - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1532"; model_cov "3520"; model_pct "61.6"; chr15 rmsk exon 97026043 97026185 667 - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1532"; repClass "LTR"; repEnd "-13"; repFamily "ERVL"; repLeft "-158"; repStart "-410"; chr15 rmsk exon 97026195 97027849 7598 - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1532"; repClass "LTR"; repEnd "5704"; repFamily "ERVL"; repLeft "4002"; repStart "-10"; chr15 rmsk exon 97028038 97028370 1604 - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1532"; repClass "LTR"; repEnd "3909"; repFamily "ERVL"; repLeft "3559"; repStart "-1805"; chr15 rmsk exon 97028905 97030377 7586 - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1532"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "2087"; repStart "-2159"; chr15 rmsk exon 97030378 97030571 692 - . gene_id "ERVLB4_15q26.2a"; transcript_id "ERVLB4_15q26.2a"; locus "ERVLB4_15q26.2a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1532"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "122"; repStart "-87"; ### HUERSP1_15q26.2a ### chr15 rmsk gene 97246910 97250192 . - . gene_id "HUERSP1_15q26.2a"; transcript_id "HUERSP1_15q26.2a"; locus "HUERSP1_15q26.2a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0184"; model_cov "2708"; model_pct "43.2"; chr15 rmsk exon 97246910 97247488 4307 - . gene_id "HUERSP1_15q26.2a"; transcript_id "HUERSP1_15q26.2a"; locus "HUERSP1_15q26.2a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0184"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "2"; repStart "-102"; chr15 rmsk exon 97247491 97250192 27057 - . gene_id "HUERSP1_15q26.2a"; transcript_id "HUERSP1_15q26.2a"; locus "HUERSP1_15q26.2a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0184"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "3554"; repStart "-1"; ### HUERSP1_15q26.2b ### chr15 rmsk gene 97250227 97251351 . - . gene_id "HUERSP1_15q26.2b"; transcript_id "HUERSP1_15q26.2b"; locus "HUERSP1_15q26.2b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0185"; model_cov "1129"; model_pct "18.0"; chr15 rmsk exon 97250227 97251351 27057 - . gene_id "HUERSP1_15q26.2b"; transcript_id "HUERSP1_15q26.2b"; locus "HUERSP1_15q26.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0185"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "5133"; repStart "-1"; ### ERVLE_15q26.2e ### chr15 rmsk gene 97326661 97328853 . + . gene_id "ERVLE_15q26.2e"; transcript_id "ERVLE_15q26.2e"; locus "ERVLE_15q26.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3183"; model_cov "2099"; model_pct "37.0"; chr15 rmsk exon 97326661 97326757 297 + . gene_id "ERVLE_15q26.2e"; transcript_id "ERVLE_15q26.2e"; locus "ERVLE_15q26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3183"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "-5356"; repStart "211"; chr15 rmsk exon 97326759 97327127 1250 + . gene_id "ERVLE_15q26.2e"; transcript_id "ERVLE_15q26.2e"; locus "ERVLE_15q26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3183"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4871"; repStart "415"; chr15 rmsk exon 97327145 97328457 3862 + . gene_id "ERVLE_15q26.2e"; transcript_id "ERVLE_15q26.2e"; locus "ERVLE_15q26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3183"; repClass "LTR"; repEnd "2306"; repFamily "ERVL"; repLeft "-3361"; repStart "864"; chr15 rmsk exon 97328690 97328853 456 + . gene_id "ERVLE_15q26.2e"; transcript_id "ERVLE_15q26.2e"; locus "ERVLE_15q26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3183"; repClass "LTR"; repEnd "4733"; repFamily "ERVL"; repLeft "-934"; repStart "4557"; ### ERVLE_15q26.2f ### chr15 rmsk gene 97496530 97500957 . - . gene_id "ERVLE_15q26.2f"; transcript_id "ERVLE_15q26.2f"; locus "ERVLE_15q26.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3184"; model_cov "4123"; model_pct "72.8"; chr15 rmsk exon 97496530 97497993 5365 - . gene_id "ERVLE_15q26.2f"; transcript_id "ERVLE_15q26.2f"; locus "ERVLE_15q26.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3184"; repClass "LTR"; repEnd "4145"; repFamily "ERVL"; repLeft "2599"; repStart "-1522"; chr15 rmsk exon 97498175 97499734 2562 - . gene_id "ERVLE_15q26.2f"; transcript_id "ERVLE_15q26.2f"; locus "ERVLE_15q26.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3184"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "982"; repStart "-3063"; chr15 rmsk exon 97500069 97500957 3431 - . gene_id "ERVLE_15q26.2f"; transcript_id "ERVLE_15q26.2f"; locus "ERVLE_15q26.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3184"; repClass "LTR"; repEnd "976"; repFamily "ERVL"; repLeft "21"; repStart "-4691"; ### ERV316A3_15q26.2c ### chr15 rmsk gene 97540490 97541950 . - . gene_id "ERV316A3_15q26.2c"; transcript_id "ERV316A3_15q26.2c"; locus "ERV316A3_15q26.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2405"; model_cov "791"; model_pct "15.1"; chr15 rmsk exon 97540490 97540914 1251 - . gene_id "ERV316A3_15q26.2c"; transcript_id "ERV316A3_15q26.2c"; locus "ERV316A3_15q26.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2405"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr15 rmsk exon 97541107 97541580 522 - . gene_id "ERV316A3_15q26.2c"; transcript_id "ERV316A3_15q26.2c"; locus "ERV316A3_15q26.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2405"; repClass "LTR"; repEnd "4727"; repFamily "ERVL"; repLeft "4249"; repStart "-499"; chr15 rmsk exon 97541644 97541950 956 - . gene_id "ERV316A3_15q26.2c"; transcript_id "ERV316A3_15q26.2c"; locus "ERV316A3_15q26.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2405"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "4156"; repStart "-757"; ### ERV316A3_15q26.2d ### chr15 rmsk gene 97546703 97548375 . - . gene_id "ERV316A3_15q26.2d"; transcript_id "ERV316A3_15q26.2d"; locus "ERV316A3_15q26.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2406"; model_cov "1290"; model_pct "24.7"; chr15 rmsk exon 97546703 97546934 797 - . gene_id "ERV316A3_15q26.2d"; transcript_id "ERV316A3_15q26.2d"; locus "ERV316A3_15q26.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2406"; repClass "LTR"; repEnd "4131"; repFamily "ERVL"; repLeft "3894"; repStart "-1095"; chr15 rmsk exon 97546919 97547410 2121 - . gene_id "ERV316A3_15q26.2d"; transcript_id "ERV316A3_15q26.2d"; locus "ERV316A3_15q26.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2406"; repClass "LTR"; repEnd "1886"; repFamily "ERVL"; repLeft "1421"; repStart "-3340"; chr15 rmsk exon 97547796 97548375 2121 - . gene_id "ERV316A3_15q26.2d"; transcript_id "ERV316A3_15q26.2d"; locus "ERV316A3_15q26.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2406"; repClass "LTR"; repEnd "1420"; repFamily "ERVL"; repLeft "832"; repStart "-3806"; ### ERVLB4_15q26.2b ### chr15 rmsk gene 97854282 97856050 . + . gene_id "ERVLB4_15q26.2b"; transcript_id "ERVLB4_15q26.2b"; locus "ERVLB4_15q26.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1533"; model_cov "1396"; model_pct "24.4"; chr15 rmsk exon 97854282 97855665 7624 + . gene_id "ERVLB4_15q26.2b"; transcript_id "ERVLB4_15q26.2b"; locus "ERVLB4_15q26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1533"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4318"; chr15 rmsk exon 97855666 97856050 1089 + . gene_id "ERVLB4_15q26.2b"; transcript_id "ERVLB4_15q26.2b"; locus "ERVLB4_15q26.2b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1533"; repClass "LTR"; repEnd "497"; repFamily "ERVL"; repLeft "-59"; repStart "143"; ### ERVLB4_15q26.3a ### chr15 rmsk gene 98045957 98046804 . + . gene_id "ERVLB4_15q26.3a"; transcript_id "ERVLB4_15q26.3a"; locus "ERVLB4_15q26.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1534"; model_cov "895"; model_pct "15.7"; chr15 rmsk exon 98045957 98046660 1109 + . gene_id "ERVLB4_15q26.3a"; transcript_id "ERVLB4_15q26.3a"; locus "ERVLB4_15q26.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1534"; repClass "LTR"; repEnd "2442"; repFamily "ERVL"; repLeft "-3272"; repStart "1688"; chr15 rmsk exon 98046658 98046804 336 + . gene_id "ERVLB4_15q26.3a"; transcript_id "ERVLB4_15q26.3a"; locus "ERVLB4_15q26.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1534"; repClass "LTR"; repEnd "2978"; repFamily "ERVL"; repLeft "-2736"; repStart "2837"; ### ERVLE_15q26.3a ### chr15 rmsk gene 98370145 98372584 . - . gene_id "ERVLE_15q26.3a"; transcript_id "ERVLE_15q26.3a"; locus "ERVLE_15q26.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3186"; model_cov "2272"; model_pct "40.1"; chr15 rmsk exon 98370145 98370524 1015 - . gene_id "ERVLE_15q26.3a"; transcript_id "ERVLE_15q26.3a"; locus "ERVLE_15q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3186"; repClass "LTR"; repEnd "2563"; repFamily "ERVL"; repLeft "2171"; repStart "-3104"; chr15 rmsk exon 98370544 98371388 1377 - . gene_id "ERVLE_15q26.3a"; transcript_id "ERVLE_15q26.3a"; locus "ERVLE_15q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3186"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "1153"; repStart "-3555"; chr15 rmsk exon 98371698 98372584 1377 - . gene_id "ERVLE_15q26.3a"; transcript_id "ERVLE_15q26.3a"; locus "ERVLE_15q26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3186"; repClass "LTR"; repEnd "1199"; repFamily "ERVL"; repLeft "278"; repStart "-4468"; ### ERVLE_15q26.3b ### chr15 rmsk gene 99383589 99384407 . - . gene_id "ERVLE_15q26.3b"; transcript_id "ERVLE_15q26.3b"; locus "ERVLE_15q26.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3187"; model_cov "578"; model_pct "10.2"; chr15 rmsk exon 99383589 99383692 291 - . gene_id "ERVLE_15q26.3b"; transcript_id "ERVLE_15q26.3b"; locus "ERVLE_15q26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3187"; repClass "LTR"; repEnd "2799"; repFamily "ERVL"; repLeft "2696"; repStart "-2868"; chr15 rmsk exon 99383958 99384407 888 - . gene_id "ERVLE_15q26.3b"; transcript_id "ERVLE_15q26.3b"; locus "ERVLE_15q26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3187"; repClass "LTR"; repEnd "981"; repFamily "ERVL"; repLeft "506"; repStart "-4686"; ### ERV316A3_15q26.3a ### chr15 rmsk gene 99963111 99968055 . + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2408"; model_cov "2722"; model_pct "52.1"; chr15 rmsk exon 99963111 99963212 412 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "118"; repFamily "ERVL"; repLeft "-320"; repStart "1"; chr15 rmsk exon 99963444 99963531 316 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-4904"; repStart "231"; chr15 rmsk exon 99963615 99964437 3894 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "1100"; repFamily "ERVL"; repLeft "-4126"; repStart "188"; chr15 rmsk exon 99964734 99965736 3894 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "2094"; repFamily "ERVL"; repLeft "-3132"; repStart "1101"; chr15 rmsk exon 99967012 99967595 3894 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "2676"; repFamily "ERVL"; repLeft "-2550"; repStart "2095"; chr15 rmsk exon 99967897 99968055 3894 + . gene_id "ERV316A3_15q26.3a"; transcript_id "ERV316A3_15q26.3a"; locus "ERV316A3_15q26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2408"; repClass "LTR"; repEnd "2822"; repFamily "ERVL"; repLeft "-2404"; repStart "2677"; ### HERVL_15q26.3 ### chr15 rmsk gene 100079598 100081376 . + . gene_id "HERVL_15q26.3"; transcript_id "HERVL_15q26.3"; locus "HERVL_15q26.3"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1129"; model_cov "1399"; model_pct "24.7"; chr15 rmsk exon 100079598 100080969 11043 + . gene_id "HERVL_15q26.3"; transcript_id "HERVL_15q26.3"; locus "HERVL_15q26.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1129"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4255"; chr15 rmsk exon 100080970 100081376 2937 + . gene_id "HERVL_15q26.3"; transcript_id "HERVL_15q26.3"; locus "HERVL_15q26.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1129"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-53"; repStart "-110"; ### HERVH_15q26.3a ### chr15 rmsk gene 100440257 100446201 . + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1071"; model_cov "5261"; model_pct "68.2"; chr15 rmsk exon 100440257 100440607 2241 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr15 rmsk exon 100440610 100444541 25120 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr15 rmsk exon 100444544 100445206 4166 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 100445208 100445423 1273 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 100445424 100445800 2253 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr15 rmsk exon 100445801 100446201 2636 + . gene_id "HERVH_15q26.3a"; transcript_id "HERVH_15q26.3a"; locus "HERVH_15q26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1071"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_15q26.3b ### chr15 rmsk gene 100806560 100814413 . - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1535"; model_cov "5481"; model_pct "95.9"; chr15 rmsk exon 100806560 100806613 229 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "358"; repStart "0"; chr15 rmsk exon 100806677 100806966 919 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "79"; repStart "-48"; chr15 rmsk exon 100807035 100807159 31611 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "5616"; repFamily "ERVL"; repLeft "5493"; repStart "-98"; chr15 rmsk exon 100808705 100811351 31611 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "5492"; repFamily "ERVL"; repLeft "2840"; repStart "-222"; chr15 rmsk exon 100811651 100814316 31611 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "2839"; repFamily "ERVL"; repLeft "133"; repStart "-2875"; chr15 rmsk exon 100814325 100814413 1176 - . gene_id "ERVLB4_15q26.3b"; transcript_id "ERVLB4_15q26.3b"; locus "ERVLB4_15q26.3b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1535"; repClass "LTR"; repEnd "424"; repFamily "ERVL"; repLeft "334"; repStart "-40"; ### HERVH_15q26.3b ### chr15 rmsk gene 101072487 101078293 . + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1072"; model_cov "4887"; model_pct "63.4"; chr15 rmsk exon 101072487 101072924 3261 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-4"; repStart "2"; chr15 rmsk exon 101072962 101075942 20034 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "22"; chr15 rmsk exon 101075937 101076086 903 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr15 rmsk exon 101076077 101076581 3508 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr15 rmsk exon 101076584 101077246 4444 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr15 rmsk exon 101077248 101077458 1288 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr15 rmsk exon 101077457 101077838 2384 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr15 rmsk exon 101077839 101078293 3619 + . gene_id "HERVH_15q26.3b"; transcript_id "HERVH_15q26.3b"; locus "HERVH_15q26.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1072"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_15q26.3c ### chr15 rmsk gene 101660376 101661379 . - . gene_id "ERVLE_15q26.3c"; transcript_id "ERVLE_15q26.3c"; locus "ERVLE_15q26.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3189"; model_cov "1068"; model_pct "18.8"; chr15 rmsk exon 101660376 101661379 2044 - . gene_id "ERVLE_15q26.3c"; transcript_id "ERVLE_15q26.3c"; locus "ERVLE_15q26.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3189"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "3451"; repStart "-1148"; ### ERVLE_15q26.3d ### chr15 rmsk gene 101726192 101727819 . + . gene_id "ERVLE_15q26.3d"; transcript_id "ERVLE_15q26.3d"; locus "ERVLE_15q26.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3190"; model_cov "1585"; model_pct "28.0"; chr15 rmsk exon 101726192 101727240 3579 + . gene_id "ERVLE_15q26.3d"; transcript_id "ERVLE_15q26.3d"; locus "ERVLE_15q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3190"; repClass "LTR"; repEnd "3214"; repFamily "ERVL"; repLeft "-2453"; repStart "2011"; chr15 rmsk exon 101727480 101727819 1170 + . gene_id "ERVLE_15q26.3d"; transcript_id "ERVLE_15q26.3d"; locus "ERVLE_15q26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3190"; repClass "LTR"; repEnd "3597"; repFamily "ERVL"; repLeft "-2070"; repStart "3215"; ### ERV316A3_15q26.3b ### chr15 rmsk gene 101821083 101824536 . + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2409"; model_cov "1744"; model_pct "33.4"; chr15 rmsk exon 101821083 101821153 276 + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2409"; repClass "LTR"; repEnd "735"; repFamily "ERVL"; repLeft "-4491"; repStart "660"; chr15 rmsk exon 101821232 101821659 1915 + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2409"; repClass "LTR"; repEnd "2465"; repFamily "ERVL"; repLeft "-2761"; repStart "1967"; chr15 rmsk exon 101821955 101822556 1915 + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2409"; repClass "LTR"; repEnd "2749"; repFamily "ERVL"; repLeft "-2477"; repStart "2100"; chr15 rmsk exon 101824018 101824358 1004 + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2409"; repClass "LTR"; repEnd "3082"; repFamily "ERVL"; repLeft "-2144"; repStart "2740"; chr15 rmsk exon 101824366 101824536 474 + . gene_id "ERV316A3_15q26.3b"; transcript_id "ERV316A3_15q26.3b"; locus "ERV316A3_15q26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2409"; repClass "LTR"; repEnd "4396"; repFamily "ERVL"; repLeft "-830"; repStart "4216"; ### LTR57_15q26.3 ### chr15 rmsk gene 101854750 101856039 . + . gene_id "LTR57_15q26.3"; transcript_id "LTR57_15q26.3"; locus "LTR57_15q26.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0151"; model_cov "1266"; model_pct "23.7"; chr15 rmsk exon 101854750 101855111 4559 + . gene_id "LTR57_15q26.3"; transcript_id "LTR57_15q26.3"; locus "LTR57_15q26.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0151"; repClass "LTR"; repEnd "902"; repFamily "ERVL"; repLeft "-4441"; repStart "310"; chr15 rmsk exon 101855372 101856039 4559 + . gene_id "LTR57_15q26.3"; transcript_id "LTR57_15q26.3"; locus "LTR57_15q26.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0151"; repClass "LTR"; repEnd "1577"; repFamily "ERVL"; repLeft "-3766"; repStart "903"; ### MER101_15q26.3 ### chr15 rmsk gene 101855112 101859449 . + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0341"; model_cov "3414"; model_pct "51.4"; chr15 rmsk exon 101855112 101855328 4182 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "-605"; repFamily "ERV1"; repLeft "-7244"; repStart "-802"; chr15 rmsk exon 101856040 101856127 4182 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-6496"; repStart "-604"; chr15 rmsk exon 101856428 101857158 4950 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "2757"; repFamily "ERV1"; repLeft "-3882"; repStart "1625"; chr15 rmsk exon 101857541 101858050 4950 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "3266"; repFamily "ERV1"; repLeft "-3373"; repStart "2758"; chr15 rmsk exon 101858329 101858702 4950 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "3529"; repFamily "ERV1"; repLeft "-3110"; repStart "2893"; chr15 rmsk exon 101859256 101859449 426 + . gene_id "MER101_15q26.3"; transcript_id "MER101_15q26.3"; locus "MER101_15q26.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0341"; repClass "LTR"; repEnd "3852"; repFamily "ERV1"; repLeft "-2787"; repStart "3658"; ### ERV316A3_15q26.3c ### chr15 rmsk gene 101948690 101950227 . + . gene_id "ERV316A3_15q26.3c"; transcript_id "ERV316A3_15q26.3c"; locus "ERV316A3_15q26.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2410"; model_cov "907"; model_pct "17.4"; chr15 rmsk exon 101948690 101949583 756 + . gene_id "ERV316A3_15q26.3c"; transcript_id "ERV316A3_15q26.3c"; locus "ERV316A3_15q26.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2410"; repClass "LTR"; repEnd "4803"; repFamily "ERVL"; repLeft "-423"; repStart "3896"; chr15 rmsk exon 101950085 101950227 260 + . gene_id "ERV316A3_15q26.3c"; transcript_id "ERV316A3_15q26.3c"; locus "ERV316A3_15q26.3c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2410"; repClass "LTR"; repEnd "376"; repFamily "ERVL"; repLeft "-113"; repStart "232"; ### HERV3_16p13.3 ### chr16 rmsk gene 43442 46385 . + . gene_id "HERV3_16p13.3"; transcript_id "HERV3_16p13.3"; locus "HERV3_16p13.3"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0059"; model_cov "2300"; model_pct "27.3"; chr16 rmsk exon 43442 43561 494 + . gene_id "HERV3_16p13.3"; transcript_id "HERV3_16p13.3"; locus "HERV3_16p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0059"; repClass "LTR"; repEnd "1124"; repFamily "ERV1"; repLeft "-7302"; repStart "971"; chr16 rmsk exon 43897 44027 2023 + . gene_id "HERV3_16p13.3"; transcript_id "HERV3_16p13.3"; locus "HERV3_16p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0059"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "-6605"; repStart "1704"; chr16 rmsk exon 44342 44709 2023 + . gene_id "HERV3_16p13.3"; transcript_id "HERV3_16p13.3"; locus "HERV3_16p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0059"; repClass "LTR"; repEnd "2196"; repFamily "ERV1"; repLeft "-6230"; repStart "1822"; chr16 rmsk exon 44715 46385 7723 + . gene_id "HERV3_16p13.3"; transcript_id "HERV3_16p13.3"; locus "HERV3_16p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0059"; repClass "LTR"; repEnd "5864"; repFamily "ERV1"; repLeft "-2562"; repStart "4208"; ### ERVLB4_16p13.3a ### chr16 rmsk gene 1935021 1937225 . - . gene_id "ERVLB4_16p13.3a"; transcript_id "ERVLB4_16p13.3a"; locus "ERVLB4_16p13.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1541"; model_cov "790"; model_pct "13.8"; chr16 rmsk exon 1935021 1935106 2857 - . gene_id "ERVLB4_16p13.3a"; transcript_id "ERVLB4_16p13.3a"; locus "ERVLB4_16p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1541"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "1645"; repStart "-3990"; chr16 rmsk exon 1935411 1936026 2857 - . gene_id "ERVLB4_16p13.3a"; transcript_id "ERVLB4_16p13.3a"; locus "ERVLB4_16p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1541"; repClass "LTR"; repEnd "1644"; repFamily "ERVL"; repLeft "1012"; repStart "-4070"; chr16 rmsk exon 1937148 1937225 366 - . gene_id "ERVLB4_16p13.3a"; transcript_id "ERVLB4_16p13.3a"; locus "ERVLB4_16p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1541"; repClass "LTR"; repEnd "1010"; repFamily "ERVL"; repLeft "931"; repStart "-4704"; ### PABLA_16p13.3a ### chr16 rmsk gene 2258735 2260147 . + . gene_id "PABLA_16p13.3a"; transcript_id "PABLA_16p13.3a"; locus "PABLA_16p13.3a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0130"; model_cov "811"; model_pct "16.2"; chr16 rmsk exon 2258735 2258831 626 + . gene_id "PABLA_16p13.3a"; transcript_id "PABLA_16p13.3a"; locus "PABLA_16p13.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0130"; repClass "LTR"; repEnd "3107"; repFamily "ERV1"; repLeft "-1908"; repStart "3010"; chr16 rmsk exon 2259141 2259607 4147 + . gene_id "PABLA_16p13.3a"; transcript_id "PABLA_16p13.3a"; locus "PABLA_16p13.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0130"; repClass "LTR"; repEnd "3711"; repFamily "ERV1"; repLeft "-1304"; repStart "3245"; chr16 rmsk exon 2259901 2260147 4147 + . gene_id "PABLA_16p13.3a"; transcript_id "PABLA_16p13.3a"; locus "PABLA_16p13.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0130"; repClass "LTR"; repEnd "3960"; repFamily "ERV1"; repLeft "-1055"; repStart "3712"; ### PABLA_16p13.3b ### chr16 rmsk gene 2260399 2262137 . + . gene_id "PABLA_16p13.3b"; transcript_id "PABLA_16p13.3b"; locus "PABLA_16p13.3b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0131"; model_cov "1053"; model_pct "21.0"; chr16 rmsk exon 2260399 2260848 4147 + . gene_id "PABLA_16p13.3b"; transcript_id "PABLA_16p13.3b"; locus "PABLA_16p13.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0131"; repClass "LTR"; repEnd "3838"; repFamily "ERV1"; repLeft "-1177"; repStart "3390"; chr16 rmsk exon 2261145 2261551 2406 + . gene_id "PABLA_16p13.3b"; transcript_id "PABLA_16p13.3b"; locus "PABLA_16p13.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0131"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "4410"; chr16 rmsk exon 2261552 2262137 3537 + . gene_id "PABLA_16p13.3b"; transcript_id "PABLA_16p13.3b"; locus "PABLA_16p13.3b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0131"; repClass "LTR"; repEnd "659"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HML4_16p13.3 ### chr16 rmsk gene 2660262 2670537 . - . gene_id "HML4_16p13.3"; transcript_id "HML4_16p13.3"; locus "HML4_16p13.3"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0016"; model_cov "7888"; model_pct "97.2"; chr16 rmsk exon 2660262 2661287 7918 - . gene_id "HML4_16p13.3"; transcript_id "HML4_16p13.3"; locus "HML4_16p13.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0016"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 2661288 2668373 17738 - . gene_id "HML4_16p13.3"; transcript_id "HML4_16p13.3"; locus "HML4_16p13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0016"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "963"; repStart "0"; chr16 rmsk exon 2668788 2669524 2905 - . gene_id "HML4_16p13.3"; transcript_id "HML4_16p13.3"; locus "HML4_16p13.3"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0016"; repClass "LTR"; repEnd "736"; repFamily "ERVK"; repLeft "1"; repStart "-7380"; chr16 rmsk exon 2669525 2670537 7997 - . gene_id "HML4_16p13.3"; transcript_id "HML4_16p13.3"; locus "HML4_16p13.3"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0016"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_16p13.3 ### chr16 rmsk gene 3076839 3081509 . - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0195"; model_cov "3773"; model_pct "62.7"; chr16 rmsk exon 3076839 3077348 4146 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 3077353 3078786 10213 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "4582"; repStart "-3"; chr16 rmsk exon 3078773 3078990 1482 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr16 rmsk exon 3078991 3080484 10823 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1276"; repStart "-3223"; chr16 rmsk exon 3080481 3081056 4191 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "19"; repStart "-5417"; chr16 rmsk exon 3081057 3081509 3317 - . gene_id "HML3_16p13.3"; transcript_id "HML3_16p13.3"; locus "HML3_16p13.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0195"; repClass "LTR"; repEnd "501"; repFamily "ERVK"; repLeft "48"; repStart "-12"; ### ERVLE_16p13.3a ### chr16 rmsk gene 3126086 3127570 . - . gene_id "ERVLE_16p13.3a"; transcript_id "ERVLE_16p13.3a"; locus "ERVLE_16p13.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3192"; model_cov "959"; model_pct "16.9"; chr16 rmsk exon 3126086 3126434 1209 - . gene_id "ERVLE_16p13.3a"; transcript_id "ERVLE_16p13.3a"; locus "ERVLE_16p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3192"; repClass "LTR"; repEnd "1330"; repFamily "ERVL"; repLeft "979"; repStart "-4337"; chr16 rmsk exon 3126731 3126889 1209 - . gene_id "ERVLE_16p13.3a"; transcript_id "ERVLE_16p13.3a"; locus "ERVLE_16p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3192"; repClass "LTR"; repEnd "978"; repFamily "ERVL"; repLeft "818"; repStart "-4689"; chr16 rmsk exon 3126954 3127218 537 - . gene_id "ERVLE_16p13.3a"; transcript_id "ERVLE_16p13.3a"; locus "ERVLE_16p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3192"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "548"; repStart "-4857"; chr16 rmsk exon 3127398 3127570 302 - . gene_id "ERVLE_16p13.3a"; transcript_id "ERVLE_16p13.3a"; locus "ERVLE_16p13.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3192"; repClass "LTR"; repEnd "527"; repFamily "ERVL"; repLeft "341"; repStart "-5140"; ### ERVLE_16p13.3b ### chr16 rmsk gene 3154472 3155580 . - . gene_id "ERVLE_16p13.3b"; transcript_id "ERVLE_16p13.3b"; locus "ERVLE_16p13.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3193"; model_cov "691"; model_pct "12.2"; chr16 rmsk exon 3154472 3154598 783 - . gene_id "ERVLE_16p13.3b"; transcript_id "ERVLE_16p13.3b"; locus "ERVLE_16p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3193"; repClass "LTR"; repEnd "1378"; repFamily "ERVL"; repLeft "1251"; repStart "-4289"; chr16 rmsk exon 3154909 3155205 783 - . gene_id "ERVLE_16p13.3b"; transcript_id "ERVLE_16p13.3b"; locus "ERVLE_16p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3193"; repClass "LTR"; repEnd "1250"; repFamily "ERVL"; repLeft "949"; repStart "-4417"; chr16 rmsk exon 3155326 3155580 504 - . gene_id "ERVLE_16p13.3b"; transcript_id "ERVLE_16p13.3b"; locus "ERVLE_16p13.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3193"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "284"; repStart "-5120"; ### ERVLB4_16p13.3b ### chr16 rmsk gene 4034057 4035336 . - . gene_id "ERVLB4_16p13.3b"; transcript_id "ERVLB4_16p13.3b"; locus "ERVLB4_16p13.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1543"; model_cov "569"; model_pct "10.0"; chr16 rmsk exon 4034057 4034129 336 - . gene_id "ERVLB4_16p13.3b"; transcript_id "ERVLB4_16p13.3b"; locus "ERVLB4_16p13.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1543"; repClass "LTR"; repEnd "261"; repFamily "ERVL"; repLeft "189"; repStart "-402"; chr16 rmsk exon 4034786 4035336 2652 - . gene_id "ERVLB4_16p13.3b"; transcript_id "ERVLB4_16p13.3b"; locus "ERVLB4_16p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1543"; repClass "LTR"; repEnd "2662"; repFamily "ERVL"; repLeft "2093"; repStart "-3052"; ### ERVLB4_16p13.3c ### chr16 rmsk gene 5237519 5238120 . - . gene_id "ERVLB4_16p13.3c"; transcript_id "ERVLB4_16p13.3c"; locus "ERVLB4_16p13.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1544"; model_cov "631"; model_pct "11.0"; chr16 rmsk exon 5237519 5238120 2992 - . gene_id "ERVLB4_16p13.3c"; transcript_id "ERVLB4_16p13.3c"; locus "ERVLB4_16p13.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1544"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1473"; repStart "-3610"; ### HERVH_16p13.2a ### chr16 rmsk gene 7814737 7820397 . + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1073"; model_cov "5058"; model_pct "65.6"; chr16 rmsk exon 7814737 7815094 2462 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr16 rmsk exon 7815097 7816507 18047 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "1502"; repFamily "ERV1"; repLeft "-6211"; repStart "1"; chr16 rmsk exon 7816566 7818242 18047 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1503"; chr16 rmsk exon 7818233 7818735 3531 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr16 rmsk exon 7818738 7819396 3134 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr16 rmsk exon 7819398 7819613 1394 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr16 rmsk exon 7819614 7819989 2233 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr16 rmsk exon 7819990 7820397 2957 + . gene_id "HERVH_16p13.2a"; transcript_id "HERVH_16p13.2a"; locus "HERVH_16p13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1073"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_16p13.2e ### chr16 rmsk gene 8833043 8845457 . - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_1075"; model_cov "6747"; model_pct "87.5"; chr16 rmsk exon 8833043 8833468 3312 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 8833469 8833843 2426 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 8833843 8834057 1228 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 8834059 8834721 4212 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr16 rmsk exon 8834724 8835226 3071 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 8835226 8835364 840 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 8835364 8837970 14730 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "225"; repStart "-4726"; chr16 rmsk exon 8837972 8838400 3439 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 8838401 8841618 22598 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4488"; repStart "0"; chr16 rmsk exon 8841621 8842123 3071 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 8842123 8843831 10467 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1576"; repStart "-4423"; chr16 rmsk exon 8843831 8845026 7379 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "1308"; repFamily "ERV1"; repLeft "1"; repStart "-6405"; chr16 rmsk exon 8845029 8845457 3393 - . gene_id "HERVH_16p13.2e"; transcript_id "HERVH_16p13.2e"; locus "HERVH_16p13.2e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1075"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4B_16p13.2 ### chr16 rmsk gene 9505921 9506699 . - . gene_id "MER4B_16p13.2"; transcript_id "MER4B_16p13.2"; locus "MER4B_16p13.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0392"; model_cov "757"; model_pct "11.2"; chr16 rmsk exon 9505921 9506699 2989 - . gene_id "MER4B_16p13.2"; transcript_id "MER4B_16p13.2"; locus "MER4B_16p13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0392"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6001"; repStart "0"; ### HERVH_16p13.2b ### chr16 rmsk gene 9670530 9677301 . - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1076"; model_cov "5758"; model_pct "74.7"; chr16 rmsk exon 9670530 9670977 3601 - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1076"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 9670978 9671358 2494 - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1076"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 9671357 9671559 1203 - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1076"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 9671561 9676819 18615 - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1076"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "1"; repStart "-2564"; chr16 rmsk exon 9676822 9677301 3519 - . gene_id "HERVH_16p13.2b"; transcript_id "HERVH_16p13.2b"; locus "HERVH_16p13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1076"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_16p13.2c ### chr16 rmsk gene 10283161 10286701 . + . gene_id "HERVH_16p13.2c"; transcript_id "HERVH_16p13.2c"; locus "HERVH_16p13.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1077"; model_cov "3139"; model_pct "40.7"; chr16 rmsk exon 10283161 10283549 2419 + . gene_id "HERVH_16p13.2c"; transcript_id "HERVH_16p13.2c"; locus "HERVH_16p13.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1077"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr16 rmsk exon 10283553 10286568 17079 + . gene_id "HERVH_16p13.2c"; transcript_id "HERVH_16p13.2c"; locus "HERVH_16p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1077"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1"; chr16 rmsk exon 10286555 10286701 932 + . gene_id "HERVH_16p13.2c"; transcript_id "HERVH_16p13.2c"; locus "HERVH_16p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1077"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; ### HERVH_16p13.2d ### chr16 rmsk gene 10292854 10295234 . + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1078"; model_cov "2030"; model_pct "26.3"; chr16 rmsk exon 10292854 10293091 1486 + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1078"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3501"; chr16 rmsk exon 10293085 10294221 6425 + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1078"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3962"; chr16 rmsk exon 10294223 10294442 1443 + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1078"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr16 rmsk exon 10294443 10294832 2483 + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1078"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr16 rmsk exon 10294833 10295234 2709 + . gene_id "HERVH_16p13.2d"; transcript_id "HERVH_16p13.2d"; locus "HERVH_16p13.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1078"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-10"; repStart "1"; ### HML3_16p13.13 ### chr16 rmsk gene 10417952 10424337 . - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0196"; model_cov "4984"; model_pct "82.8"; chr16 rmsk exon 10417952 10418417 3175 - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0196"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "-13"; chr16 rmsk exon 10418418 10419244 6515 - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0196"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5193"; repStart "0"; chr16 rmsk exon 10419447 10422962 26057 - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0196"; repClass "LTR"; repEnd "5196"; repFamily "ERVK"; repLeft "1673"; repStart "-825"; chr16 rmsk exon 10423299 10423919 4362 - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0196"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "46"; repStart "-5342"; chr16 rmsk exon 10423921 10424337 2517 - . gene_id "HML3_16p13.13"; transcript_id "HML3_16p13.13"; locus "HML3_16p13.13"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0196"; repClass "LTR"; repEnd "456"; repFamily "ERVK"; repLeft "1"; repStart "-56"; ### HERVI_16p13.13 ### chr16 rmsk gene 10446457 10447680 . - . gene_id "HERVI_16p13.13"; transcript_id "HERVI_16p13.13"; locus "HERVI_16p13.13"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0032"; model_cov "1002"; model_pct "12.9"; chr16 rmsk exon 10446457 10447438 3162 - . gene_id "HERVI_16p13.13"; transcript_id "HERVI_16p13.13"; locus "HERVI_16p13.13"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0032"; repClass "LTR"; repEnd "1004"; repFamily "ERV1"; repLeft "2"; repStart "-6781"; chr16 rmsk exon 10447439 10447680 1089 - . gene_id "HERVI_16p13.13"; transcript_id "HERVI_16p13.13"; locus "HERVI_16p13.13"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0032"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "268"; repStart "0"; ### HERVIP10F_16p13.13 ### chr16 rmsk gene 10485767 10495203 . + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0100"; model_cov "9173"; model_pct "100.0"; chr16 rmsk exon 10485767 10486268 2773 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; chr16 rmsk exon 10486579 10487220 2345 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "639"; repFamily "ERV1"; repLeft "-7098"; repStart "1"; chr16 rmsk exon 10487216 10487390 732 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "1171"; repFamily "ERV1"; repLeft "-6566"; repStart "993"; chr16 rmsk exon 10487396 10487564 826 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "1582"; repFamily "ERV1"; repLeft "-6155"; repStart "1415"; chr16 rmsk exon 10487742 10488030 1294 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "2032"; repFamily "ERV1"; repLeft "-5705"; repStart "1740"; chr16 rmsk exon 10488319 10488369 1294 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "2093"; repFamily "ERV1"; repLeft "-5644"; repStart "2033"; chr16 rmsk exon 10488679 10489389 3609 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "-4510"; repStart "2516"; chr16 rmsk exon 10489364 10490498 5499 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "4473"; repFamily "ERV1"; repLeft "-3264"; repStart "3313"; chr16 rmsk exon 10490488 10493944 12745 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "7326"; repFamily "ERV1"; repLeft "-411"; repStart "1769"; chr16 rmsk exon 10494257 10494679 12745 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "7327"; chr16 rmsk exon 10494680 10495203 3021 + . gene_id "HERVIP10F_16p13.13"; transcript_id "HERVIP10F_16p13.13"; locus "HERVIP10F_16p13.13"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0100"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### HERVH_16p13.12 ### chr16 rmsk gene 13352583 13358061 . - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1079"; model_cov "4802"; model_pct "62.3"; chr16 rmsk exon 13352583 13353016 3163 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 13353017 13353389 2404 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 13353388 13353603 1387 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 13353605 13354266 4426 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr16 rmsk exon 13354269 13354766 3349 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 13354757 13354901 796 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 13354896 13357242 16370 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "439"; repStart "-4726"; chr16 rmsk exon 13357241 13357573 2581 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "333"; repFamily "ERV1"; repLeft "1"; repStart "-7380"; chr16 rmsk exon 13357576 13358061 3272 - . gene_id "HERVH_16p13.12"; transcript_id "HERVH_16p13.12"; locus "HERVH_16p13.12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1079"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVL_16p13.12 ### chr16 rmsk gene 13466039 13467642 . + . gene_id "ERVL_16p13.12"; transcript_id "ERVL_16p13.12"; locus "ERVL_16p13.12"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0396"; model_cov "1023"; model_pct "17.8"; chr16 rmsk exon 13466039 13466822 4827 + . gene_id "ERVL_16p13.12"; transcript_id "ERVL_16p13.12"; locus "ERVL_16p13.12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0396"; repClass "LTR"; repEnd "5558"; repFamily "ERVL"; repLeft "-199"; repStart "4795"; chr16 rmsk exon 13466818 13467077 1772 + . gene_id "ERVL_16p13.12"; transcript_id "ERVL_16p13.12"; locus "ERVL_16p13.12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0396"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5497"; chr16 rmsk exon 13467078 13467642 2434 + . gene_id "ERVL_16p13.12"; transcript_id "ERVL_16p13.12"; locus "ERVL_16p13.12"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0396"; repClass "LTR"; repEnd "547"; repFamily "ERVL"; repLeft "-7"; repStart "1"; ### ERVLE_16p13.12 ### chr16 rmsk gene 13892332 13894259 . + . gene_id "ERVLE_16p13.12"; transcript_id "ERVLE_16p13.12"; locus "ERVLE_16p13.12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3197"; model_cov "1332"; model_pct "23.5"; chr16 rmsk exon 13892332 13893026 2080 + . gene_id "ERVLE_16p13.12"; transcript_id "ERVLE_16p13.12"; locus "ERVLE_16p13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3197"; repClass "LTR"; repEnd "4666"; repFamily "ERVL"; repLeft "-1001"; repStart "3961"; chr16 rmsk exon 13893191 13893420 1821 + . gene_id "ERVLE_16p13.12"; transcript_id "ERVLE_16p13.12"; locus "ERVLE_16p13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3197"; repClass "LTR"; repEnd "4887"; repFamily "ERVL"; repLeft "-780"; repStart "4666"; chr16 rmsk exon 13893844 13894259 1821 + . gene_id "ERVLE_16p13.12"; transcript_id "ERVLE_16p13.12"; locus "ERVLE_16p13.12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3197"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "-373"; repStart "4888"; ### MER101_16p13.11 ### chr16 rmsk gene 15383093 15384195 . + . gene_id "MER101_16p13.11"; transcript_id "MER101_16p13.11"; locus "MER101_16p13.11"; category "internal"; intModel "MER101-int"; locid "MER101-int_0348"; model_cov "815"; model_pct "12.3"; chr16 rmsk exon 15383093 15383155 380 + . gene_id "MER101_16p13.11"; transcript_id "MER101_16p13.11"; locus "MER101_16p13.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0348"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 15383147 15383641 1626 + . gene_id "MER101_16p13.11"; transcript_id "MER101_16p13.11"; locus "MER101_16p13.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0348"; repClass "LTR"; repEnd "3787"; repFamily "ERV1"; repLeft "-2852"; repStart "3298"; chr16 rmsk exon 15383641 15383673 897 + . gene_id "MER101_16p13.11"; transcript_id "MER101_16p13.11"; locus "MER101_16p13.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0348"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3662"; chr16 rmsk exon 15383964 15384195 897 + . gene_id "MER101_16p13.11"; transcript_id "MER101_16p13.11"; locus "MER101_16p13.11"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0348"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### ERV316A3_16p12.3 ### chr16 rmsk gene 16803687 16805134 . - . gene_id "ERV316A3_16p12.3"; transcript_id "ERV316A3_16p12.3"; locus "ERV316A3_16p12.3"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2412"; model_cov "856"; model_pct "16.4"; chr16 rmsk exon 16803687 16803760 288 - . gene_id "ERV316A3_16p12.3"; transcript_id "ERV316A3_16p12.3"; locus "ERV316A3_16p12.3"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2412"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "113"; repStart "-277"; chr16 rmsk exon 16803768 16804259 2157 - . gene_id "ERV316A3_16p12.3"; transcript_id "ERV316A3_16p12.3"; locus "ERV316A3_16p12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2412"; repClass "LTR"; repEnd "868"; repFamily "ERVL"; repLeft "370"; repStart "-4358"; chr16 rmsk exon 16804304 16804673 2157 - . gene_id "ERV316A3_16p12.3"; transcript_id "ERV316A3_16p12.3"; locus "ERV316A3_16p12.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2412"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "11"; repStart "-4857"; chr16 rmsk exon 16804680 16805134 2061 - . gene_id "ERV316A3_16p12.3"; transcript_id "ERV316A3_16p12.3"; locus "ERV316A3_16p12.3"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2412"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_16p12.3 ### chr16 rmsk gene 16924193 16926476 . - . gene_id "ERVLB4_16p12.3"; transcript_id "ERVLB4_16p12.3"; locus "ERVLB4_16p12.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1546"; model_cov "1934"; model_pct "33.8"; chr16 rmsk exon 16924193 16925619 9644 - . gene_id "ERVLB4_16p12.3"; transcript_id "ERVLB4_16p12.3"; locus "ERVLB4_16p12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1546"; repClass "LTR"; repEnd "2160"; repFamily "ERVL"; repLeft "708"; repStart "-3554"; chr16 rmsk exon 16925989 16926476 9644 - . gene_id "ERVLB4_16p12.3"; transcript_id "ERVLB4_16p12.3"; locus "ERVLB4_16p12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1546"; repClass "LTR"; repEnd "707"; repFamily "ERVL"; repLeft "225"; repStart "-5007"; ### HERVH_16p12.3 ### chr16 rmsk gene 18990537 18997301 . - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1080"; model_cov "4658"; model_pct "60.4"; chr16 rmsk exon 18990537 18990981 3354 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "1"; repStart "-15"; chr16 rmsk exon 18990982 18991537 3671 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr16 rmsk exon 18993056 18993298 1519 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "5998"; repFamily "ERV1"; repLeft "5756"; repStart "-1715"; chr16 rmsk exon 18993289 18994404 3506 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "5781"; repFamily "ERV1"; repLeft "4563"; repStart "-1932"; chr16 rmsk exon 18994469 18994624 889 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "3511"; repFamily "ERV1"; repLeft "3357"; repStart "-4202"; chr16 rmsk exon 18994625 18996714 11772 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "800"; repStart "-4883"; chr16 rmsk exon 18996740 18997197 1157 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr16 rmsk exon 18997231 18997301 570 - . gene_id "HERVH_16p12.3"; transcript_id "HERVH_16p12.3"; locus "HERVH_16p12.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1080"; repClass "LTR"; repEnd "71"; repFamily "ERV1"; repLeft "1"; repStart "-393"; ### MER41_16p12.3 ### chr16 rmsk gene 19079920 19081944 . + . gene_id "MER41_16p12.3"; transcript_id "MER41_16p12.3"; locus "MER41_16p12.3"; category "internal"; intModel "MER41-int"; locid "MER41-int_0469"; model_cov "2098"; model_pct "35.3"; chr16 rmsk exon 19079920 19081944 11451 + . gene_id "MER41_16p12.3"; transcript_id "MER41_16p12.3"; locus "MER41_16p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0469"; repClass "LTR"; repEnd "5512"; repFamily "ERV1"; repLeft "-434"; repStart "3414"; ### ERVL_16p12.3 ### chr16 rmsk gene 19272499 19281613 . - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0397"; model_cov "5723"; model_pct "99.4"; chr16 rmsk exon 19272499 19273073 2061 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr16 rmsk exon 19273074 19273334 23709 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5501"; repStart "0"; chr16 rmsk exon 19273639 19273921 23709 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "5500"; repFamily "ERVL"; repLeft "5259"; repStart "-257"; chr16 rmsk exon 19274054 19277256 23709 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "5258"; repFamily "ERVL"; repLeft "2068"; repStart "-499"; chr16 rmsk exon 19277747 19278140 2704 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "2071"; repFamily "ERVL"; repLeft "1675"; repStart "-3686"; chr16 rmsk exon 19278344 19279370 6088 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "701"; repStart "-4049"; chr16 rmsk exon 19280107 19280715 3095 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "738"; repFamily "ERVL"; repLeft "138"; repStart "-5019"; chr16 rmsk exon 19281014 19281048 3095 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "104"; repStart "-5620"; chr16 rmsk exon 19281049 19281613 1725 - . gene_id "ERVL_16p12.3"; transcript_id "ERVL_16p12.3"; locus "ERVL_16p12.3"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0397"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVK14C_16p12.3 ### chr16 rmsk gene 19393582 19402152 . - . gene_id "HERVK14C_16p12.3"; transcript_id "HERVK14C_16p12.3"; locus "HERVK14C_16p12.3"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0024"; model_cov "7433"; model_pct "100.0"; chr16 rmsk exon 19393582 19394166 4967 - . gene_id "HERVK14C_16p12.3"; transcript_id "HERVK14C_16p12.3"; locus "HERVK14C_16p12.3"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0024"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 19394167 19401565 62572 - . gene_id "HERVK14C_16p12.3"; transcript_id "HERVK14C_16p12.3"; locus "HERVK14C_16p12.3"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0024"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 19401566 19402152 5023 - . gene_id "HERVK14C_16p12.3"; transcript_id "HERVK14C_16p12.3"; locus "HERVK14C_16p12.3"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0024"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER61_16p12.3 ### chr16 rmsk gene 19402791 19407864 . - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0333"; model_cov "4645"; model_pct "89.0"; chr16 rmsk exon 19402791 19403125 1820 - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0333"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 19403126 19406927 25647 - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0333"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1321"; repStart "0"; chr16 rmsk exon 19406918 19406991 292 - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0333"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "355"; repStart "-4819"; chr16 rmsk exon 19406960 19407532 2007 - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0333"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-4510"; chr16 rmsk exon 19407533 19407864 1774 - . gene_id "MER61_16p12.3"; transcript_id "MER61_16p12.3"; locus "MER61_16p12.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0333"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HERVL_16p12.3a ### chr16 rmsk gene 20452113 20454551 . + . gene_id "HERVL_16p12.3a"; transcript_id "HERVL_16p12.3a"; locus "HERVL_16p12.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1130"; model_cov "810"; model_pct "14.3"; chr16 rmsk exon 20452113 20452521 3057 + . gene_id "HERVL_16p12.3a"; transcript_id "HERVL_16p12.3a"; locus "HERVL_16p12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1130"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-53"; repStart "-110"; chr16 rmsk exon 20452604 20452661 386 + . gene_id "HERVL_16p12.3a"; transcript_id "HERVL_16p12.3a"; locus "HERVL_16p12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1130"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "388"; chr16 rmsk exon 20452662 20453236 6501 + . gene_id "HERVL_16p12.3a"; transcript_id "HERVL_16p12.3a"; locus "HERVL_16p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1130"; repClass "LTR"; repEnd "558"; repFamily "ERVL"; repLeft "-5096"; repStart "1"; chr16 rmsk exon 20454292 20454551 6501 + . gene_id "HERVL_16p12.3a"; transcript_id "HERVL_16p12.3a"; locus "HERVL_16p12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1130"; repClass "LTR"; repEnd "812"; repFamily "ERVL"; repLeft "-4842"; repStart "559"; ### LTR25_16p12.3a ### chr16 rmsk gene 20496266 20498364 . + . gene_id "LTR25_16p12.3a"; transcript_id "LTR25_16p12.3a"; locus "LTR25_16p12.3a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0115"; model_cov "3964"; model_pct "55.1"; chr16 rmsk exon 20496266 20496403 738 + . gene_id "LTR25_16p12.3a"; transcript_id "LTR25_16p12.3a"; locus "LTR25_16p12.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0115"; repClass "LTR"; repEnd "2380"; repFamily "ERV1"; repLeft "-4808"; repStart "2248"; chr16 rmsk exon 20496410 20498364 7113 + . gene_id "LTR25_16p12.3a"; transcript_id "LTR25_16p12.3a"; locus "LTR25_16p12.3a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0115"; repClass "LTR"; repEnd "5722"; repFamily "ERV1"; repLeft "-1466"; repStart "1890"; ### LTR25_16p12.3b ### chr16 rmsk gene 20524933 20527456 . - . gene_id "LTR25_16p12.3b"; transcript_id "LTR25_16p12.3b"; locus "LTR25_16p12.3b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0116"; model_cov "4114"; model_pct "57.2"; chr16 rmsk exon 20524933 20525130 1506 - . gene_id "LTR25_16p12.3b"; transcript_id "LTR25_16p12.3b"; locus "LTR25_16p12.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0116"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "6991"; repStart "0"; chr16 rmsk exon 20525132 20527312 7095 - . gene_id "LTR25_16p12.3b"; transcript_id "LTR25_16p12.3b"; locus "LTR25_16p12.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0116"; repClass "LTR"; repEnd "5675"; repFamily "ERV1"; repLeft "1890"; repStart "-1513"; chr16 rmsk exon 20527319 20527456 738 - . gene_id "LTR25_16p12.3b"; transcript_id "LTR25_16p12.3b"; locus "LTR25_16p12.3b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0116"; repClass "LTR"; repEnd "2380"; repFamily "ERV1"; repLeft "2248"; repStart "-4808"; ### HERVL_16p12.3b ### chr16 rmsk gene 20573337 20575775 . - . gene_id "HERVL_16p12.3b"; transcript_id "HERVL_16p12.3b"; locus "HERVL_16p12.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1131"; model_cov "810"; model_pct "14.3"; chr16 rmsk exon 20573337 20573596 6504 - . gene_id "HERVL_16p12.3b"; transcript_id "HERVL_16p12.3b"; locus "HERVL_16p12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1131"; repClass "LTR"; repEnd "812"; repFamily "ERVL"; repLeft "559"; repStart "-4842"; chr16 rmsk exon 20574652 20575226 6504 - . gene_id "HERVL_16p12.3b"; transcript_id "HERVL_16p12.3b"; locus "HERVL_16p12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1131"; repClass "LTR"; repEnd "558"; repFamily "ERVL"; repLeft "1"; repStart "-5096"; chr16 rmsk exon 20575227 20575284 392 - . gene_id "HERVL_16p12.3b"; transcript_id "HERVL_16p12.3b"; locus "HERVL_16p12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1131"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "388"; repStart "0"; chr16 rmsk exon 20575367 20575775 3091 - . gene_id "HERVL_16p12.3b"; transcript_id "HERVL_16p12.3b"; locus "HERVL_16p12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1131"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-110"; repStart "-53"; ### HML1_16p12.3a ### chr16 rmsk gene 20641357 20642589 . + . gene_id "HML1_16p12.3a"; transcript_id "HML1_16p12.3a"; locus "HML1_16p12.3a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0103"; model_cov "816"; model_pct "13.4"; chr16 rmsk exon 20641357 20641770 1860 + . gene_id "HML1_16p12.3a"; transcript_id "HML1_16p12.3a"; locus "HML1_16p12.3a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0103"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr16 rmsk exon 20641771 20642589 6078 + . gene_id "HML1_16p12.3a"; transcript_id "HML1_16p12.3a"; locus "HML1_16p12.3a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0103"; repClass "LTR"; repEnd "817"; repFamily "ERVK"; repLeft "-5279"; repStart "1"; ### HERVIP10FH_16p12.3 ### chr16 rmsk gene 20642834 20644949 . + . gene_id "HERVIP10FH_16p12.3"; transcript_id "HERVIP10FH_16p12.3"; locus "HERVIP10FH_16p12.3"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0148"; model_cov "952"; model_pct "18.7"; chr16 rmsk exon 20642834 20643009 1251 + . gene_id "HERVIP10FH_16p12.3"; transcript_id "HERVIP10FH_16p12.3"; locus "HERVIP10FH_16p12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0148"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "-3952"; repStart "971"; chr16 rmsk exon 20644142 20644538 5044 + . gene_id "HERVIP10FH_16p12.3"; transcript_id "HERVIP10FH_16p12.3"; locus "HERVIP10FH_16p12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0148"; repClass "LTR"; repEnd "1572"; repFamily "ERV1"; repLeft "-3530"; repStart "1152"; chr16 rmsk exon 20644580 20644949 5044 + . gene_id "HERVIP10FH_16p12.3"; transcript_id "HERVIP10FH_16p12.3"; locus "HERVIP10FH_16p12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0148"; repClass "LTR"; repEnd "1926"; repFamily "ERV1"; repLeft "-3176"; repStart "1573"; ### HERVW_16p12.3 ### chr16 rmsk gene 20644952 20646904 . + . gene_id "HERVW_16p12.3"; transcript_id "HERVW_16p12.3"; locus "HERVW_16p12.3"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0264"; model_cov "2014"; model_pct "23.3"; chr16 rmsk exon 20644952 20645425 3923 + . gene_id "HERVW_16p12.3"; transcript_id "HERVW_16p12.3"; locus "HERVW_16p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0264"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "1543"; chr16 rmsk exon 20645409 20646856 10809 + . gene_id "HERVW_16p12.3"; transcript_id "HERVW_16p12.3"; locus "HERVW_16p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0264"; repClass "LTR"; repEnd "7175"; repFamily "ERV1"; repLeft "-1451"; repStart "5682"; chr16 rmsk exon 20646856 20646904 339 + . gene_id "HERVW_16p12.3"; transcript_id "HERVW_16p12.3"; locus "HERVW_16p12.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0264"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8145"; repStart "433"; ### HML1_16p12.3b ### chr16 rmsk gene 20646892 20648152 . + . gene_id "HML1_16p12.3b"; transcript_id "HML1_16p12.3b"; locus "HML1_16p12.3b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0104"; model_cov "869"; model_pct "14.3"; chr16 rmsk exon 20646892 20647348 1862 + . gene_id "HML1_16p12.3b"; transcript_id "HML1_16p12.3b"; locus "HML1_16p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0104"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "-495"; repStart "5036"; chr16 rmsk exon 20647352 20647528 1418 + . gene_id "HML1_16p12.3b"; transcript_id "HML1_16p12.3b"; locus "HML1_16p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0104"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5716"; chr16 rmsk exon 20647604 20647736 658 + . gene_id "HML1_16p12.3b"; transcript_id "HML1_16p12.3b"; locus "HML1_16p12.3b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0104"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5973"; chr16 rmsk exon 20647740 20648152 1875 + . gene_id "HML1_16p12.3b"; transcript_id "HML1_16p12.3b"; locus "HML1_16p12.3b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0104"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4B_16p12.3a ### chr16 rmsk gene 20649160 20652551 . + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0394"; model_cov "2539"; model_pct "37.6"; chr16 rmsk exon 20649160 20649175 5584 + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0394"; repClass "LTR"; repEnd "23"; repFamily "ERV1"; repLeft "-743"; repStart "1"; chr16 rmsk exon 20649201 20649945 5584 + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0394"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "-1"; repStart "24"; chr16 rmsk exon 20649946 20651048 6820 + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0394"; repClass "LTR"; repEnd "1180"; repFamily "ERV1"; repLeft "-5578"; repStart "1"; chr16 rmsk exon 20651057 20651346 2430 + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0394"; repClass "LTR"; repEnd "2245"; repFamily "ERV1"; repLeft "-4513"; repStart "1926"; chr16 rmsk exon 20651652 20652551 3075 + . gene_id "MER4B_16p12.3a"; transcript_id "MER4B_16p12.3a"; locus "MER4B_16p12.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0394"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "-4113"; repStart "1604"; ### MER4B_16p12.3b ### chr16 rmsk gene 20655409 20660157 . + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0395"; model_cov "1727"; model_pct "25.6"; chr16 rmsk exon 20655409 20655655 4018 + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0395"; repClass "LTR"; repEnd "2380"; repFamily "ERV1"; repLeft "-4378"; repStart "2123"; chr16 rmsk exon 20655960 20656614 4018 + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0395"; repClass "LTR"; repEnd "3054"; repFamily "ERV1"; repLeft "-3704"; repStart "2381"; chr16 rmsk exon 20656621 20657282 3482 + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0395"; repClass "LTR"; repEnd "6516"; repFamily "ERV1"; repLeft "-242"; repStart "5828"; chr16 rmsk exon 20658486 20658596 731 + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0395"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "-113"; repStart "6536"; chr16 rmsk exon 20659400 20660157 5661 + . gene_id "MER4B_16p12.3b"; transcript_id "MER4B_16p12.3b"; locus "MER4B_16p12.3b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0395"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_16p12.2a ### chr16 rmsk gene 21427157 21428254 . + . gene_id "MER101_16p12.2a"; transcript_id "MER101_16p12.2a"; locus "MER101_16p12.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0349"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 21427157 21427219 380 + . gene_id "MER101_16p12.2a"; transcript_id "MER101_16p12.2a"; locus "MER101_16p12.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0349"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 21427211 21427700 1572 + . gene_id "MER101_16p12.2a"; transcript_id "MER101_16p12.2a"; locus "MER101_16p12.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0349"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr16 rmsk exon 21427704 21427733 903 + . gene_id "MER101_16p12.2a"; transcript_id "MER101_16p12.2a"; locus "MER101_16p12.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0349"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr16 rmsk exon 21428027 21428254 903 + . gene_id "MER101_16p12.2a"; transcript_id "MER101_16p12.2a"; locus "MER101_16p12.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0349"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### MER101_16p12.2b ### chr16 rmsk gene 21859437 21860534 . + . gene_id "MER101_16p12.2b"; transcript_id "MER101_16p12.2b"; locus "MER101_16p12.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0350"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 21859437 21859499 404 + . gene_id "MER101_16p12.2b"; transcript_id "MER101_16p12.2b"; locus "MER101_16p12.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0350"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 21859491 21859980 1666 + . gene_id "MER101_16p12.2b"; transcript_id "MER101_16p12.2b"; locus "MER101_16p12.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0350"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr16 rmsk exon 21859984 21860013 944 + . gene_id "MER101_16p12.2b"; transcript_id "MER101_16p12.2b"; locus "MER101_16p12.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0350"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr16 rmsk exon 21860307 21860534 944 + . gene_id "MER101_16p12.2b"; transcript_id "MER101_16p12.2b"; locus "MER101_16p12.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0350"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### MER101_16p12.2c ### chr16 rmsk gene 22510650 22511743 . - . gene_id "MER101_16p12.2c"; transcript_id "MER101_16p12.2c"; locus "MER101_16p12.2c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0351"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 22510650 22510873 913 - . gene_id "MER101_16p12.2c"; transcript_id "MER101_16p12.2c"; locus "MER101_16p12.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0351"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "3694"; repStart "-2712"; chr16 rmsk exon 22511167 22511196 913 - . gene_id "MER101_16p12.2c"; transcript_id "MER101_16p12.2c"; locus "MER101_16p12.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0351"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "3665"; repStart "-2946"; chr16 rmsk exon 22511200 22511689 1666 - . gene_id "MER101_16p12.2c"; transcript_id "MER101_16p12.2c"; locus "MER101_16p12.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0351"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "3298"; repStart "-2853"; chr16 rmsk exon 22511681 22511743 404 - . gene_id "MER101_16p12.2c"; transcript_id "MER101_16p12.2c"; locus "MER101_16p12.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0351"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "3075"; repStart "-3502"; ### ERVL_16p12.2 ### chr16 rmsk gene 23992260 23998394 . + . gene_id "ERVL_16p12.2"; transcript_id "ERVL_16p12.2"; locus "ERVL_16p12.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0398"; model_cov "5756"; model_pct "100.0"; chr16 rmsk exon 23992260 23997897 38273 + . gene_id "ERVL_16p12.2"; transcript_id "ERVL_16p12.2"; locus "ERVL_16p12.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0398"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr16 rmsk exon 23997898 23998394 2299 + . gene_id "ERVL_16p12.2"; transcript_id "ERVL_16p12.2"; locus "ERVL_16p12.2"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0398"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_16p12.1a ### chr16 rmsk gene 24512646 24515513 . + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3198"; model_cov "1713"; model_pct "30.2"; chr16 rmsk exon 24512646 24512715 2889 + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3198"; repClass "LTR"; repEnd "2477"; repFamily "ERVL"; repLeft "-3190"; repStart "2412"; chr16 rmsk exon 24513028 24513467 2889 + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3198"; repClass "LTR"; repEnd "2867"; repFamily "ERVL"; repLeft "-2800"; repStart "2478"; chr16 rmsk exon 24513698 24513737 2889 + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3198"; repClass "LTR"; repEnd "2898"; repFamily "ERVL"; repLeft "-2769"; repStart "2868"; chr16 rmsk exon 24514045 24514646 2889 + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3198"; repClass "LTR"; repEnd "3531"; repFamily "ERVL"; repLeft "-2136"; repStart "2899"; chr16 rmsk exon 24514948 24515513 2889 + . gene_id "ERVLE_16p12.1a"; transcript_id "ERVLE_16p12.1a"; locus "ERVLE_16p12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3198"; repClass "LTR"; repEnd "4129"; repFamily "ERVL"; repLeft "-1538"; repStart "3532"; ### ERVLE_16p12.1b ### chr16 rmsk gene 24799588 24800616 . - . gene_id "ERVLE_16p12.1b"; transcript_id "ERVLE_16p12.1b"; locus "ERVLE_16p12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3199"; model_cov "1044"; model_pct "18.4"; chr16 rmsk exon 24799588 24800283 1686 - . gene_id "ERVLE_16p12.1b"; transcript_id "ERVLE_16p12.1b"; locus "ERVLE_16p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3199"; repClass "LTR"; repEnd "5366"; repFamily "ERVL"; repLeft "4649"; repStart "-301"; chr16 rmsk exon 24800310 24800616 800 - . gene_id "ERVLE_16p12.1b"; transcript_id "ERVLE_16p12.1b"; locus "ERVLE_16p12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3199"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "4281"; repStart "-1059"; ### PRIMA41_16p12.1a ### chr16 rmsk gene 25140926 25142814 . - . gene_id "PRIMA41_16p12.1a"; transcript_id "PRIMA41_16p12.1a"; locus "PRIMA41_16p12.1a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0126"; model_cov "1162"; model_pct "15.0"; chr16 rmsk exon 25140926 25141348 1756 - . gene_id "PRIMA41_16p12.1a"; transcript_id "PRIMA41_16p12.1a"; locus "PRIMA41_16p12.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0126"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7078"; repStart "0"; chr16 rmsk exon 25141657 25141960 1606 - . gene_id "PRIMA41_16p12.1a"; transcript_id "PRIMA41_16p12.1a"; locus "PRIMA41_16p12.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0126"; repClass "LTR"; repEnd "7319"; repFamily "ERV1"; repLeft "7002"; repStart "-437"; chr16 rmsk exon 25142507 25142814 1055 - . gene_id "PRIMA41_16p12.1a"; transcript_id "PRIMA41_16p12.1a"; locus "PRIMA41_16p12.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0126"; repClass "LTR"; repEnd "5645"; repFamily "ERV1"; repLeft "5478"; repStart "-2111"; ### PRIMA41_16p12.1b ### chr16 rmsk gene 25142911 25148818 . - . gene_id "PRIMA41_16p12.1b"; transcript_id "PRIMA41_16p12.1b"; locus "PRIMA41_16p12.1b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0127"; model_cov "5117"; model_pct "66.0"; chr16 rmsk exon 25142911 25147276 3420 - . gene_id "PRIMA41_16p12.1b"; transcript_id "PRIMA41_16p12.1b"; locus "PRIMA41_16p12.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0127"; repClass "LTR"; repEnd "6145"; repFamily "ERV1"; repLeft "1691"; repStart "-1611"; chr16 rmsk exon 25147516 25147687 353 - . gene_id "PRIMA41_16p12.1b"; transcript_id "PRIMA41_16p12.1b"; locus "PRIMA41_16p12.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0127"; repClass "LTR"; repEnd "3892"; repFamily "ERV1"; repLeft "3721"; repStart "-3864"; chr16 rmsk exon 25148345 25148510 331 - . gene_id "PRIMA41_16p12.1b"; transcript_id "PRIMA41_16p12.1b"; locus "PRIMA41_16p12.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0127"; repClass "LTR"; repEnd "1576"; repFamily "ERV1"; repLeft "1405"; repStart "-6180"; chr16 rmsk exon 25148526 25148818 873 - . gene_id "PRIMA41_16p12.1b"; transcript_id "PRIMA41_16p12.1b"; locus "PRIMA41_16p12.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0127"; repClass "LTR"; repEnd "1196"; repFamily "ERV1"; repLeft "875"; repStart "-6560"; ### ERV316A3_16p12.1 ### chr16 rmsk gene 28287960 28288926 . - . gene_id "ERV316A3_16p12.1"; transcript_id "ERV316A3_16p12.1"; locus "ERV316A3_16p12.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2418"; model_cov "580"; model_pct "11.1"; chr16 rmsk exon 28287960 28288392 1578 - . gene_id "ERV316A3_16p12.1"; transcript_id "ERV316A3_16p12.1"; locus "ERV316A3_16p12.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2418"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr16 rmsk exon 28288413 28288926 1009 - . gene_id "ERV316A3_16p12.1"; transcript_id "ERV316A3_16p12.1"; locus "ERV316A3_16p12.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2418"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "4592"; repStart "-54"; ### ERVLE_16p12.1c ### chr16 rmsk gene 28418482 28419698 . - . gene_id "ERVLE_16p12.1c"; transcript_id "ERVLE_16p12.1c"; locus "ERVLE_16p12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3203"; model_cov "635"; model_pct "11.2"; chr16 rmsk exon 28418482 28418638 1911 - . gene_id "ERVLE_16p12.1c"; transcript_id "ERVLE_16p12.1c"; locus "ERVLE_16p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3203"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "2264"; repStart "-3223"; chr16 rmsk exon 28418930 28419012 1911 - . gene_id "ERVLE_16p12.1c"; transcript_id "ERVLE_16p12.1c"; locus "ERVLE_16p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3203"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "2190"; repStart "-3404"; chr16 rmsk exon 28419306 28419698 1911 - . gene_id "ERVLE_16p12.1c"; transcript_id "ERVLE_16p12.1c"; locus "ERVLE_16p12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3203"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "1807"; repStart "-3478"; ### MER101_16p11.2a ### chr16 rmsk gene 28635181 28636282 . - . gene_id "MER101_16p11.2a"; transcript_id "MER101_16p11.2a"; locus "MER101_16p11.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0353"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 28635181 28635411 888 - . gene_id "MER101_16p11.2a"; transcript_id "MER101_16p11.2a"; locus "MER101_16p11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0353"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "3694"; repStart "-2712"; chr16 rmsk exon 28635703 28635732 888 - . gene_id "MER101_16p11.2a"; transcript_id "MER101_16p11.2a"; locus "MER101_16p11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0353"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "3665"; repStart "-2946"; chr16 rmsk exon 28635736 28636228 1704 - . gene_id "MER101_16p11.2a"; transcript_id "MER101_16p11.2a"; locus "MER101_16p11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0353"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "3298"; repStart "-2853"; chr16 rmsk exon 28636220 28636282 360 - . gene_id "MER101_16p11.2a"; transcript_id "MER101_16p11.2a"; locus "MER101_16p11.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0353"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "3075"; repStart "-3502"; ### ERVLE_16p11.2a ### chr16 rmsk gene 28695315 28696541 . + . gene_id "ERVLE_16p11.2a"; transcript_id "ERVLE_16p11.2a"; locus "ERVLE_16p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3204"; model_cov "635"; model_pct "11.2"; chr16 rmsk exon 28695315 28695707 1875 + . gene_id "ERVLE_16p11.2a"; transcript_id "ERVLE_16p11.2a"; locus "ERVLE_16p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3204"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "-3478"; repStart "1807"; chr16 rmsk exon 28696001 28696083 1875 + . gene_id "ERVLE_16p11.2a"; transcript_id "ERVLE_16p11.2a"; locus "ERVLE_16p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3204"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "-3404"; repStart "2190"; chr16 rmsk exon 28696385 28696541 1875 + . gene_id "ERVLE_16p11.2a"; transcript_id "ERVLE_16p11.2a"; locus "ERVLE_16p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3204"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "-3223"; repStart "2264"; ### ERVLE_16p11.2b ### chr16 rmsk gene 28809507 28813917 . + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3205"; model_cov "1442"; model_pct "25.4"; chr16 rmsk exon 28809507 28809899 2023 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "-3478"; repStart "1807"; chr16 rmsk exon 28810193 28810275 2023 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "-3404"; repStart "2190"; chr16 rmsk exon 28810564 28810720 2023 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "2444"; repFamily "ERVL"; repLeft "-3223"; repStart "2264"; chr16 rmsk exon 28811451 28811544 1881 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "4723"; repFamily "ERVL"; repLeft "-944"; repStart "4637"; chr16 rmsk exon 28813016 28813567 1919 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "5306"; repFamily "ERVL"; repLeft "-361"; repStart "4622"; chr16 rmsk exon 28813878 28813917 1881 + . gene_id "ERVLE_16p11.2b"; transcript_id "ERVLE_16p11.2b"; locus "ERVLE_16p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3205"; repClass "LTR"; repEnd "5344"; repFamily "ERVL"; repLeft "-323"; repStart "5307"; ### HERVL_16p11.2 ### chr16 rmsk gene 29002652 29008043 . + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1132"; model_cov "3997"; model_pct "70.7"; chr16 rmsk exon 29002652 29002726 29309 + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1132"; repClass "LTR"; repEnd "1724"; repFamily "ERVL"; repLeft "-3930"; repStart "1654"; chr16 rmsk exon 29003035 29006845 29309 + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1132"; repClass "LTR"; repEnd "5578"; repFamily "ERVL"; repLeft "-76"; repStart "1725"; chr16 rmsk exon 29007140 29007214 29309 + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1132"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5579"; chr16 rmsk exon 29007215 29007400 1881 + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1132"; repClass "LTR"; repEnd "184"; repFamily "ERVL"; repLeft "-269"; repStart "1"; chr16 rmsk exon 29007691 29008043 1881 + . gene_id "HERVL_16p11.2"; transcript_id "HERVL_16p11.2"; locus "HERVL_16p11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1132"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "84"; ### MER101_16p11.2b ### chr16 rmsk gene 29405860 29406960 . + . gene_id "MER101_16p11.2b"; transcript_id "MER101_16p11.2b"; locus "MER101_16p11.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0355"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 29405860 29405922 404 + . gene_id "MER101_16p11.2b"; transcript_id "MER101_16p11.2b"; locus "MER101_16p11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0355"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 29405914 29406402 1716 + . gene_id "MER101_16p11.2b"; transcript_id "MER101_16p11.2b"; locus "MER101_16p11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0355"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr16 rmsk exon 29406406 29406435 911 + . gene_id "MER101_16p11.2b"; transcript_id "MER101_16p11.2b"; locus "MER101_16p11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0355"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr16 rmsk exon 29406729 29406960 911 + . gene_id "MER101_16p11.2b"; transcript_id "MER101_16p11.2b"; locus "MER101_16p11.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0355"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### MER101_16p11.2c ### chr16 rmsk gene 29507644 29508743 . + . gene_id "MER101_16p11.2c"; transcript_id "MER101_16p11.2c"; locus "MER101_16p11.2c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0356"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 29507644 29507706 405 + . gene_id "MER101_16p11.2c"; transcript_id "MER101_16p11.2c"; locus "MER101_16p11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0356"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 29507698 29508187 1715 + . gene_id "MER101_16p11.2c"; transcript_id "MER101_16p11.2c"; locus "MER101_16p11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0356"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr16 rmsk exon 29508191 29508220 971 + . gene_id "MER101_16p11.2c"; transcript_id "MER101_16p11.2c"; locus "MER101_16p11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0356"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr16 rmsk exon 29508516 29508743 971 + . gene_id "MER101_16p11.2c"; transcript_id "MER101_16p11.2c"; locus "MER101_16p11.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0356"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### HUERSP3B_16p11.2a ### chr16 rmsk gene 29708769 29715758 . + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0118"; model_cov "3642"; model_pct "49.1"; chr16 rmsk exon 29708769 29709406 4166 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr16 rmsk exon 29709407 29709676 3407 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "268"; repFamily "ERV1"; repLeft "-7150"; repStart "1"; chr16 rmsk exon 29710182 29710490 3407 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "581"; repFamily "ERV1"; repLeft "-6837"; repStart "269"; chr16 rmsk exon 29710476 29711369 12949 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "1623"; repFamily "ERV1"; repLeft "-5795"; repStart "746"; chr16 rmsk exon 29711691 29711903 12949 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "1823"; repFamily "ERV1"; repLeft "-5595"; repStart "1624"; chr16 rmsk exon 29712221 29713015 12949 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "2640"; repFamily "ERV1"; repLeft "-4778"; repStart "1824"; chr16 rmsk exon 29714612 29715398 5603 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chr16 rmsk exon 29715390 29715508 746 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "4829"; repFamily "ERV1"; repLeft "-2589"; repStart "4713"; chr16 rmsk exon 29715503 29715758 5464 + . gene_id "HUERSP3B_16p11.2a"; transcript_id "HUERSP3B_16p11.2a"; locus "HUERSP3B_16p11.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0118"; repClass "LTR"; repEnd "6057"; repFamily "ERV1"; repLeft "-1361"; repStart "5803"; ### HUERSP3B_16p11.2b ### chr16 rmsk gene 29716021 29719561 . + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0119"; model_cov "1579"; model_pct "21.3"; chr16 rmsk exon 29716021 29716162 11296 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "-1670"; repStart "5676"; chr16 rmsk exon 29716462 29716608 11296 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "5882"; repFamily "ERV1"; repLeft "-1536"; repStart "5749"; chr16 rmsk exon 29716906 29717295 11296 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "6279"; repFamily "ERV1"; repLeft "-1139"; repStart "5883"; chr16 rmsk exon 29717563 29717883 11296 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "6600"; repFamily "ERV1"; repLeft "-818"; repStart "6280"; chr16 rmsk exon 29718483 29719144 11296 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "7259"; repFamily "ERV1"; repLeft "-159"; repStart "6601"; chr16 rmsk exon 29719145 29719561 2810 + . gene_id "HUERSP3B_16p11.2b"; transcript_id "HUERSP3B_16p11.2b"; locus "HUERSP3B_16p11.2b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0119"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "223"; ### MER101_16p11.2d ### chr16 rmsk gene 30247627 30248726 . + . gene_id "MER101_16p11.2d"; transcript_id "MER101_16p11.2d"; locus "MER101_16p11.2d"; category "internal"; intModel "MER101-int"; locid "MER101-int_0357"; model_cov "811"; model_pct "12.2"; chr16 rmsk exon 30247627 30247689 404 + . gene_id "MER101_16p11.2d"; transcript_id "MER101_16p11.2d"; locus "MER101_16p11.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0357"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 30247681 30248170 1679 + . gene_id "MER101_16p11.2d"; transcript_id "MER101_16p11.2d"; locus "MER101_16p11.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0357"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr16 rmsk exon 30248174 30248203 949 + . gene_id "MER101_16p11.2d"; transcript_id "MER101_16p11.2d"; locus "MER101_16p11.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0357"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr16 rmsk exon 30248499 30248726 949 + . gene_id "MER101_16p11.2d"; transcript_id "MER101_16p11.2d"; locus "MER101_16p11.2d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0357"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### HERVFH21_16p11.2 ### chr16 rmsk gene 30541765 30548758 . - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0035"; model_cov "5912"; model_pct "90.5"; chr16 rmsk exon 30541765 30542201 3232 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 30542202 30543640 7986 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "6111"; repFamily "ERV1"; repLeft "3437"; repStart "-418"; chr16 rmsk exon 30543801 30544102 2178 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "3985"; repFamily "ERV1"; repLeft "3684"; repStart "-2544"; chr16 rmsk exon 30544321 30544937 4260 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "3701"; repFamily "ERV1"; repLeft "3075"; repStart "-2828"; chr16 rmsk exon 30544918 30546615 12089 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "2314"; repFamily "ERV1"; repLeft "656"; repStart "-4215"; chr16 rmsk exon 30547378 30547532 12089 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "496"; repStart "-5874"; chr16 rmsk exon 30547832 30548317 12089 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "1"; repStart "-6034"; chr16 rmsk exon 30548318 30548758 3128 - . gene_id "HERVFH21_16p11.2"; transcript_id "HERVFH21_16p11.2"; locus "HERVFH21_16p11.2"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0035"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML6_16p11.2 ### chr16 rmsk gene 30615683 30624281 . - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0072"; model_cov "7170"; model_pct "99.6"; chr16 rmsk exon 30615683 30616111 2388 - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0072"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "1"; repStart "-62"; chr16 rmsk exon 30616114 30617039 41159 - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0072"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6275"; repStart "-2"; chr16 rmsk exon 30617344 30618480 41159 - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0072"; repClass "LTR"; repEnd "6274"; repFamily "ERVK"; repLeft "5148"; repStart "-928"; chr16 rmsk exon 30618767 30623834 41159 - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0072"; repClass "LTR"; repEnd "5147"; repFamily "ERVK"; repLeft "28"; repStart "-2055"; chr16 rmsk exon 30623845 30624281 2476 - . gene_id "HML6_16p11.2"; transcript_id "HML6_16p11.2"; locus "HML6_16p11.2"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0072"; repClass "LTR"; repEnd "443"; repFamily "ERVK"; repLeft "1"; repStart "-56"; ### ERVLE_16p11.2c ### chr16 rmsk gene 30843007 30844751 . - . gene_id "ERVLE_16p11.2c"; transcript_id "ERVLE_16p11.2c"; locus "ERVLE_16p11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3206"; model_cov "650"; model_pct "11.5"; chr16 rmsk exon 30843007 30843172 784 - . gene_id "ERVLE_16p11.2c"; transcript_id "ERVLE_16p11.2c"; locus "ERVLE_16p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3206"; repClass "LTR"; repEnd "3858"; repFamily "ERVL"; repLeft "3685"; repStart "-1809"; chr16 rmsk exon 30843616 30843754 473 - . gene_id "ERVLE_16p11.2c"; transcript_id "ERVLE_16p11.2c"; locus "ERVLE_16p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3206"; repClass "LTR"; repEnd "3133"; repFamily "ERVL"; repLeft "2998"; repStart "-2534"; chr16 rmsk exon 30844408 30844751 1687 - . gene_id "ERVLE_16p11.2c"; transcript_id "ERVLE_16p11.2c"; locus "ERVLE_16p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3206"; repClass "LTR"; repEnd "2433"; repFamily "ERVL"; repLeft "2091"; repStart "-3234"; ### ERVLE_16p11.2d ### chr16 rmsk gene 30846716 30848540 . + . gene_id "ERVLE_16p11.2d"; transcript_id "ERVLE_16p11.2d"; locus "ERVLE_16p11.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3207"; model_cov "1252"; model_pct "22.1"; chr16 rmsk exon 30846716 30847200 601 + . gene_id "ERVLE_16p11.2d"; transcript_id "ERVLE_16p11.2d"; locus "ERVLE_16p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3207"; repClass "LTR"; repEnd "491"; repFamily "ERVL"; repLeft "-5176"; repStart "6"; chr16 rmsk exon 30847331 30847513 1258 + . gene_id "ERVLE_16p11.2d"; transcript_id "ERVLE_16p11.2d"; locus "ERVLE_16p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3207"; repClass "LTR"; repEnd "812"; repFamily "ERVL"; repLeft "-4855"; repStart "623"; chr16 rmsk exon 30847826 30848291 1258 + . gene_id "ERVLE_16p11.2d"; transcript_id "ERVLE_16p11.2d"; locus "ERVLE_16p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3207"; repClass "LTR"; repEnd "1277"; repFamily "ERVL"; repLeft "-4390"; repStart "813"; chr16 rmsk exon 30848428 30848540 414 + . gene_id "ERVLE_16p11.2d"; transcript_id "ERVLE_16p11.2d"; locus "ERVLE_16p11.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3207"; repClass "LTR"; repEnd "1585"; repFamily "ERVL"; repLeft "-4082"; repStart "1471"; ### HERVH_16p11.2 ### chr16 rmsk gene 30859452 30864906 . + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1087"; model_cov "4276"; model_pct "55.4"; chr16 rmsk exon 30859452 30859878 2978 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr16 rmsk exon 30859879 30860010 619 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "136"; repFamily "ERV1"; repLeft "-7577"; repStart "1"; chr16 rmsk exon 30860151 30860330 841 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "291"; chr16 rmsk exon 30860393 30861857 8948 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "2300"; repFamily "ERV1"; repLeft "-5413"; repStart "808"; chr16 rmsk exon 30862136 30862272 8948 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "-5286"; repStart "2301"; chr16 rmsk exon 30862256 30863057 4762 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "2790"; chr16 rmsk exon 30863057 30863864 3705 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "4552"; repFamily "ERV1"; repLeft "-3161"; repStart "3810"; chr16 rmsk exon 30863855 30864115 1615 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr16 rmsk exon 30864109 30864664 3721 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr16 rmsk exon 30864665 30864906 2792 + . gene_id "HERVH_16p11.2"; transcript_id "HERVH_16p11.2"; locus "HERVH_16p11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1087"; repClass "LTR"; repEnd "234"; repFamily "ERV1"; repLeft "-230"; repStart "1"; ### HML3_16p11.2a ### chr16 rmsk gene 31539720 31543400 . + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0197"; model_cov "2654"; model_pct "44.1"; chr16 rmsk exon 31539720 31540228 3974 + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0197"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr16 rmsk exon 31540229 31540796 4430 + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0197"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr16 rmsk exon 31540795 31542324 12348 + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0197"; repClass "LTR"; repEnd "2971"; repFamily "ERVK"; repLeft "-3050"; repStart "1436"; chr16 rmsk exon 31542351 31542892 4375 + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0197"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5481"; chr16 rmsk exon 31542893 31543400 3856 + . gene_id "HML3_16p11.2a"; transcript_id "HML3_16p11.2a"; locus "HML3_16p11.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0197"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML1_16p11.2 ### chr16 rmsk gene 31659961 31668393 . + . gene_id "HML1_16p11.2"; transcript_id "HML1_16p11.2"; locus "HML1_16p11.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0105"; model_cov "7358"; model_pct "100.0"; chr16 rmsk exon 31659961 31660570 2917 + . gene_id "HML1_16p11.2"; transcript_id "HML1_16p11.2"; locus "HML1_16p11.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0105"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "15"; chr16 rmsk exon 31660571 31667607 38731 + . gene_id "HML1_16p11.2"; transcript_id "HML1_16p11.2"; locus "HML1_16p11.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0105"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "-75"; repStart "-1337"; chr16 rmsk exon 31667777 31668393 3207 + . gene_id "HML1_16p11.2"; transcript_id "HML1_16p11.2"; locus "HML1_16p11.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0105"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "17"; ### HML5_16p11.2 ### chr16 rmsk gene 31763078 31767906 . - . gene_id "HML5_16p11.2"; transcript_id "HML5_16p11.2"; locus "HML5_16p11.2"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0106"; model_cov "3933"; model_pct "57.5"; chr16 rmsk exon 31763078 31764604 11450 - . gene_id "HML5_16p11.2"; transcript_id "HML5_16p11.2"; locus "HML5_16p11.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0106"; repClass "LTR"; repEnd "4702"; repFamily "ERVK"; repLeft "3165"; repStart "-2135"; chr16 rmsk exon 31765127 31767418 11346 - . gene_id "HML5_16p11.2"; transcript_id "HML5_16p11.2"; locus "HML5_16p11.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0106"; repClass "LTR"; repEnd "2397"; repFamily "ERVK"; repLeft "1"; repStart "-4440"; chr16 rmsk exon 31767419 31767906 3038 - . gene_id "HML5_16p11.2"; transcript_id "HML5_16p11.2"; locus "HML5_16p11.2"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0106"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10FH_16p11.2a ### chr16 rmsk gene 31848236 31850266 . + . gene_id "HERVIP10FH_16p11.2a"; transcript_id "HERVIP10FH_16p11.2a"; locus "HERVIP10FH_16p11.2a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0150"; model_cov "1183"; model_pct "23.2"; chr16 rmsk exon 31848236 31848873 4579 + . gene_id "HERVIP10FH_16p11.2a"; transcript_id "HERVIP10FH_16p11.2a"; locus "HERVIP10FH_16p11.2a"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0150"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr16 rmsk exon 31848887 31849554 2266 + . gene_id "HERVIP10FH_16p11.2a"; transcript_id "HERVIP10FH_16p11.2a"; locus "HERVIP10FH_16p11.2a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0150"; repClass "LTR"; repEnd "833"; repFamily "ERV1"; repLeft "-4269"; repStart "22"; chr16 rmsk exon 31850018 31850266 1203 + . gene_id "HERVIP10FH_16p11.2a"; transcript_id "HERVIP10FH_16p11.2a"; locus "HERVIP10FH_16p11.2a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0150"; repClass "LTR"; repEnd "2270"; repFamily "ERV1"; repLeft "-2832"; repStart "1898"; ### HERVIP10F_16p11.2 ### chr16 rmsk gene 31850239 31852659 . + . gene_id "HERVIP10F_16p11.2"; transcript_id "HERVIP10F_16p11.2"; locus "HERVIP10F_16p11.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0101"; model_cov "858"; model_pct "11.1"; chr16 rmsk exon 31850239 31850382 610 + . gene_id "HERVIP10F_16p11.2"; transcript_id "HERVIP10F_16p11.2"; locus "HERVIP10F_16p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0101"; repClass "LTR"; repEnd "4750"; repFamily "ERV1"; repLeft "-2987"; repStart "4612"; chr16 rmsk exon 31851325 31851932 2945 + . gene_id "HERVIP10F_16p11.2"; transcript_id "HERVIP10F_16p11.2"; locus "HERVIP10F_16p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0101"; repClass "LTR"; repEnd "6976"; repFamily "ERV1"; repLeft "-761"; repStart "6366"; chr16 rmsk exon 31851916 31852021 419 + . gene_id "HERVIP10F_16p11.2"; transcript_id "HERVIP10F_16p11.2"; locus "HERVIP10F_16p11.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0101"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "7625"; chr16 rmsk exon 31852025 31852659 3908 + . gene_id "HERVIP10F_16p11.2"; transcript_id "HERVIP10F_16p11.2"; locus "HERVIP10F_16p11.2"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10F-int_0101"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_16p11.2b ### chr16 rmsk gene 31850804 31851322 . + . gene_id "HERVIP10FH_16p11.2b"; transcript_id "HERVIP10FH_16p11.2b"; locus "HERVIP10FH_16p11.2b"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0151"; model_cov "525"; model_pct "10.3"; chr16 rmsk exon 31850804 31851322 2227 + . gene_id "HERVIP10FH_16p11.2b"; transcript_id "HERVIP10FH_16p11.2b"; locus "HERVIP10FH_16p11.2b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0151"; repClass "LTR"; repEnd "1298"; repFamily "ERV1"; repLeft "-3804"; repStart "773"; ### MER4_16p11.2a ### chr16 rmsk gene 32041066 32046048 . + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0706"; model_cov "5531"; model_pct "83.8"; chr16 rmsk exon 32041066 32041989 9555 + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0706"; repClass "LTR"; repEnd "2336"; repFamily "ERV1"; repLeft "-4262"; repStart "794"; chr16 rmsk exon 32042052 32043084 9555 + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0706"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "-2533"; repStart "2337"; chr16 rmsk exon 32043362 32045574 9555 + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0706"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "-312"; repStart "4066"; chr16 rmsk exon 32045943 32045984 9555 + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0706"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "-270"; repStart "6287"; chr16 rmsk exon 32045986 32046048 1528 + . gene_id "MER4_16p11.2a"; transcript_id "MER4_16p11.2a"; locus "MER4_16p11.2a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0706"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "-409"; repStart "193"; ### ERV316A3_16p11.2a ### chr16 rmsk gene 32444792 32446352 . - . gene_id "ERV316A3_16p11.2a"; transcript_id "ERV316A3_16p11.2a"; locus "ERV316A3_16p11.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2419"; model_cov "1301"; model_pct "24.9"; chr16 rmsk exon 32444792 32444931 347 - . gene_id "ERV316A3_16p11.2a"; transcript_id "ERV316A3_16p11.2a"; locus "ERV316A3_16p11.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2419"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "2"; repStart "-294"; chr16 rmsk exon 32444935 32445200 409 - . gene_id "ERV316A3_16p11.2a"; transcript_id "ERV316A3_16p11.2a"; locus "ERV316A3_16p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2419"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4967"; repStart "0"; chr16 rmsk exon 32445333 32446352 2728 - . gene_id "ERV316A3_16p11.2a"; transcript_id "ERV316A3_16p11.2a"; locus "ERV316A3_16p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2419"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "3552"; repStart "-632"; ### ERV316A3_16p11.2b ### chr16 rmsk gene 32449242 32450522 . - . gene_id "ERV316A3_16p11.2b"; transcript_id "ERV316A3_16p11.2b"; locus "ERV316A3_16p11.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2420"; model_cov "996"; model_pct "19.1"; chr16 rmsk exon 32449242 32449377 916 - . gene_id "ERV316A3_16p11.2b"; transcript_id "ERV316A3_16p11.2b"; locus "ERV316A3_16p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2420"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "2963"; repStart "-2129"; chr16 rmsk exon 32449745 32450228 951 - . gene_id "ERV316A3_16p11.2b"; transcript_id "ERV316A3_16p11.2b"; locus "ERV316A3_16p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2420"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "2389"; repStart "-2264"; chr16 rmsk exon 32450232 32450522 426 - . gene_id "ERV316A3_16p11.2b"; transcript_id "ERV316A3_16p11.2b"; locus "ERV316A3_16p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2420"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "2419"; repStart "-2518"; ### MER4_16p11.2b ### chr16 rmsk gene 32984295 32989274 . + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0707"; model_cov "5531"; model_pct "83.8"; chr16 rmsk exon 32984295 32985218 9580 + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0707"; repClass "LTR"; repEnd "2343"; repFamily "ERV1"; repLeft "-4255"; repStart "794"; chr16 rmsk exon 32985286 32986309 9580 + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0707"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "-2533"; repStart "2344"; chr16 rmsk exon 32986587 32988800 9580 + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0707"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "-312"; repStart "4066"; chr16 rmsk exon 32989169 32989210 9580 + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0707"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "-270"; repStart "6287"; chr16 rmsk exon 32989212 32989274 1486 + . gene_id "MER4_16p11.2b"; transcript_id "MER4_16p11.2b"; locus "MER4_16p11.2b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0707"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "-409"; repStart "193"; ### ERVLB4_16p11.2 ### chr16 rmsk gene 33673000 33673543 . + . gene_id "ERVLB4_16p11.2"; transcript_id "ERVLB4_16p11.2"; locus "ERVLB4_16p11.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1552"; model_cov "580"; model_pct "10.2"; chr16 rmsk exon 33673000 33673543 3116 + . gene_id "ERVLB4_16p11.2"; transcript_id "ERVLB4_16p11.2"; locus "ERVLB4_16p11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1552"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "-352"; repStart "4782"; ### MER4_16p11.2c ### chr16 rmsk gene 33864805 33868791 . - . gene_id "MER4_16p11.2c"; transcript_id "MER4_16p11.2c"; locus "MER4_16p11.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0708"; model_cov "3981"; model_pct "60.3"; chr16 rmsk exon 33864805 33864867 1359 - . gene_id "MER4_16p11.2c"; transcript_id "MER4_16p11.2c"; locus "MER4_16p11.2c"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0708"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "193"; repStart "-409"; chr16 rmsk exon 33864869 33864910 8425 - . gene_id "MER4_16p11.2c"; transcript_id "MER4_16p11.2c"; locus "MER4_16p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0708"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "6287"; repStart "-270"; chr16 rmsk exon 33865279 33867490 8425 - . gene_id "MER4_16p11.2c"; transcript_id "MER4_16p11.2c"; locus "MER4_16p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0708"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "4066"; repStart "-312"; chr16 rmsk exon 33867768 33868791 8425 - . gene_id "MER4_16p11.2c"; transcript_id "MER4_16p11.2c"; locus "MER4_16p11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0708"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "2345"; repStart "-2533"; ### MER4_16p11.2d ### chr16 rmsk gene 33868862 33869781 . - . gene_id "MER4_16p11.2d"; transcript_id "MER4_16p11.2d"; locus "MER4_16p11.2d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0709"; model_cov "1550"; model_pct "23.5"; chr16 rmsk exon 33868862 33869781 8425 - . gene_id "MER4_16p11.2d"; transcript_id "MER4_16p11.2d"; locus "MER4_16p11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0709"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "2515"; repStart "-2533"; ### HML3_16p11.2b ### chr16 rmsk gene 34339330 34343308 . + . gene_id "HML3_16p11.2b"; transcript_id "HML3_16p11.2b"; locus "HML3_16p11.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0198"; model_cov "3489"; model_pct "57.9"; chr16 rmsk exon 34339330 34342804 27997 + . gene_id "HML3_16p11.2b"; transcript_id "HML3_16p11.2b"; locus "HML3_16p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0198"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "2532"; chr16 rmsk exon 34342805 34343308 3970 + . gene_id "HML3_16p11.2b"; transcript_id "HML3_16p11.2b"; locus "HML3_16p11.2b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0198"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_16p11.2a ### chr16 rmsk gene 34412057 34414804 . - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0104"; model_cov "1692"; model_pct "22.5"; chr16 rmsk exon 34412057 34413016 8716 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 34413112 34414727 14823 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr16 rmsk exon 34414727 34414804 602 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5457"; repStart "-2002"; ### HML2_16p11.2b ### chr16 rmsk gene 34997026 34999771 . + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0105"; model_cov "1692"; model_pct "22.5"; chr16 rmsk exon 34997026 34997103 600 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5457"; chr16 rmsk exon 34997103 34998718 14851 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr16 rmsk exon 34998814 34999771 9064 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_16p11.2c ### chr16 rmsk gene 35068520 35074915 . - . gene_id "HML3_16p11.2c"; transcript_id "HML3_16p11.2c"; locus "HML3_16p11.2c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0199"; model_cov "5936"; model_pct "98.6"; chr16 rmsk exon 35068520 35069023 4170 - . gene_id "HML3_16p11.2c"; transcript_id "HML3_16p11.2c"; locus "HML3_16p11.2c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0199"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 35069024 35074915 47727 - . gene_id "HML3_16p11.2c"; transcript_id "HML3_16p11.2c"; locus "HML3_16p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0199"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "85"; repStart "0"; ### HERVL40_16p11.2 ### chr16 rmsk gene 35239413 35241130 . + . gene_id "HERVL40_16p11.2"; transcript_id "HERVL40_16p11.2"; locus "HERVL40_16p11.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0390"; model_cov "1194"; model_pct "21.6"; chr16 rmsk exon 35239413 35239702 826 + . gene_id "HERVL40_16p11.2"; transcript_id "HERVL40_16p11.2"; locus "HERVL40_16p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0390"; repClass "LTR"; repEnd "2325"; repFamily "ERVL"; repLeft "-3205"; repStart "2028"; chr16 rmsk exon 35239723 35240049 1012 + . gene_id "HERVL40_16p11.2"; transcript_id "HERVL40_16p11.2"; locus "HERVL40_16p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0390"; repClass "LTR"; repEnd "2953"; repFamily "ERVL"; repLeft "-2577"; repStart "2593"; chr16 rmsk exon 35240423 35240631 1012 + . gene_id "HERVL40_16p11.2"; transcript_id "HERVL40_16p11.2"; locus "HERVL40_16p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0390"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "-2370"; repStart "2954"; chr16 rmsk exon 35240843 35241130 676 + . gene_id "HERVL40_16p11.2"; transcript_id "HERVL40_16p11.2"; locus "HERVL40_16p11.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0390"; repClass "LTR"; repEnd "3865"; repFamily "ERVL"; repLeft "-1665"; repStart "3534"; ### HERVS71_16p11.2 ### chr16 rmsk gene 35267618 35277076 . - . gene_id "HERVS71_16p11.2"; transcript_id "HERVS71_16p11.2"; locus "HERVS71_16p11.2"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0041"; model_cov "8604"; model_pct "95.8"; chr16 rmsk exon 35267618 35268168 3910 - . gene_id "HERVS71_16p11.2"; transcript_id "HERVS71_16p11.2"; locus "HERVS71_16p11.2"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0041"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 35268169 35269044 5796 - . gene_id "HERVS71_16p11.2"; transcript_id "HERVS71_16p11.2"; locus "HERVS71_16p11.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0041"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8027"; repStart "-69"; chr16 rmsk exon 35269045 35276525 40765 - . gene_id "HERVS71_16p11.2"; transcript_id "HERVS71_16p11.2"; locus "HERVS71_16p11.2"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0041"; repClass "LTR"; repEnd "7726"; repFamily "ERV1"; repLeft "4"; repStart "-1252"; chr16 rmsk exon 35276528 35277076 3908 - . gene_id "HERVS71_16p11.2"; transcript_id "HERVS71_16p11.2"; locus "HERVS71_16p11.2"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0041"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_16p11.1a ### chr16 rmsk gene 35328625 35331071 . + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0391"; model_cov "1043"; model_pct "18.9"; chr16 rmsk exon 35328625 35328847 361 + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0391"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1395"; chr16 rmsk exon 35328847 35329115 769 + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0391"; repClass "LTR"; repEnd "2325"; repFamily "ERVL"; repLeft "-3205"; repStart "2050"; chr16 rmsk exon 35330255 35330324 391 + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0391"; repClass "LTR"; repEnd "3603"; repFamily "ERVL"; repLeft "-1927"; repStart "3534"; chr16 rmsk exon 35330533 35330828 484 + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0391"; repClass "LTR"; repEnd "4289"; repFamily "ERVL"; repLeft "-1241"; repStart "3983"; chr16 rmsk exon 35330905 35331071 303 + . gene_id "HERVL40_16p11.1a"; transcript_id "HERVL40_16p11.1a"; locus "HERVL40_16p11.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0391"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-874"; repStart "4485"; ### HERVL40_16p11.1b ### chr16 rmsk gene 35377642 35379842 . + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0392"; model_cov "746"; model_pct "13.5"; chr16 rmsk exon 35377642 35377910 858 + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0392"; repClass "LTR"; repEnd "2325"; repFamily "ERVL"; repLeft "-3205"; repStart "2050"; chr16 rmsk exon 35379033 35379115 336 + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0392"; repClass "LTR"; repEnd "3616"; repFamily "ERVL"; repLeft "-1914"; repStart "3534"; chr16 rmsk exon 35379194 35379297 285 + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0392"; repClass "LTR"; repEnd "3855"; repFamily "ERVL"; repLeft "-1675"; repStart "3750"; chr16 rmsk exon 35379451 35379586 493 + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0392"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "-1269"; repStart "4130"; chr16 rmsk exon 35379687 35379842 276 + . gene_id "HERVL40_16p11.1b"; transcript_id "HERVL40_16p11.1b"; locus "HERVL40_16p11.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0392"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-874"; repStart "4503"; ### HERVL40_16p11.1c ### chr16 rmsk gene 35399395 35400747 . + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0393"; model_cov "832"; model_pct "15.0"; chr16 rmsk exon 35399395 35399558 329 + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0393"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1456"; chr16 rmsk exon 35399562 35399827 718 + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0393"; repClass "LTR"; repEnd "2325"; repFamily "ERVL"; repLeft "-3205"; repStart "2054"; chr16 rmsk exon 35399832 35399921 309 + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0393"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2864"; repStart "2577"; chr16 rmsk exon 35400073 35400173 587 + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0393"; repClass "LTR"; repEnd "2956"; repFamily "ERVL"; repLeft "-2574"; repStart "2848"; chr16 rmsk exon 35400540 35400747 587 + . gene_id "HERVL40_16p11.1c"; transcript_id "HERVL40_16p11.1c"; locus "HERVL40_16p11.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0393"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "-2370"; repStart "2957"; ### MER34B_16p11.1 ### chr16 rmsk gene 35437545 35439581 . - . gene_id "MER34B_16p11.1"; transcript_id "MER34B_16p11.1"; locus "MER34B_16p11.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0245"; model_cov "802"; model_pct "15.0"; chr16 rmsk exon 35437545 35437886 475 - . gene_id "MER34B_16p11.1"; transcript_id "MER34B_16p11.1"; locus "MER34B_16p11.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0245"; repClass "LTR"; repEnd "4966"; repFamily "ERV1"; repLeft "4608"; repStart "-390"; chr16 rmsk exon 35437878 35438142 394 - . gene_id "MER34B_16p11.1"; transcript_id "MER34B_16p11.1"; locus "MER34B_16p11.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0245"; repClass "LTR"; repEnd "4415"; repFamily "ERV1"; repLeft "4266"; repStart "-941"; chr16 rmsk exon 35439297 35439581 860 - . gene_id "MER34B_16p11.1"; transcript_id "MER34B_16p11.1"; locus "MER34B_16p11.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0245"; repClass "LTR"; repEnd "3607"; repFamily "ERV1"; repLeft "3312"; repStart "-1749"; ### HERVL40_16p11.1d ### chr16 rmsk gene 35465169 35467390 . + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0394"; model_cov "1179"; model_pct "21.3"; chr16 rmsk exon 35465169 35465398 409 + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0394"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1397"; chr16 rmsk exon 35465398 35465656 664 + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0394"; repClass "LTR"; repEnd "2315"; repFamily "ERVL"; repLeft "-3215"; repStart "2050"; chr16 rmsk exon 35465673 35465874 536 + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0394"; repClass "LTR"; repEnd "2794"; repFamily "ERVL"; repLeft "-2736"; repStart "2592"; chr16 rmsk exon 35466789 35466954 369 + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0394"; repClass "LTR"; repEnd "3720"; repFamily "ERVL"; repLeft "-1810"; repStart "3534"; chr16 rmsk exon 35467093 35467390 517 + . gene_id "HERVL40_16p11.1d"; transcript_id "HERVL40_16p11.1d"; locus "HERVL40_16p11.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0394"; repClass "LTR"; repEnd "4289"; repFamily "ERVL"; repLeft "-1241"; repStart "3983"; ### HML6_16p11.1 ### chr16 rmsk gene 35516604 35524479 . + . gene_id "HML6_16p11.1"; transcript_id "HML6_16p11.1"; locus "HML6_16p11.1"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0073"; model_cov "7172"; model_pct "99.6"; chr16 rmsk exon 35516604 35517040 2522 + . gene_id "HML6_16p11.1"; transcript_id "HML6_16p11.1"; locus "HML6_16p11.1"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0073"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "-55"; repStart "1"; chr16 rmsk exon 35517050 35524053 40395 + . gene_id "HML6_16p11.1"; transcript_id "HML6_16p11.1"; locus "HML6_16p11.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0073"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "28"; chr16 rmsk exon 35524056 35524479 2375 + . gene_id "HML6_16p11.1"; transcript_id "HML6_16p11.1"; locus "HML6_16p11.1"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0073"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "1"; ### HERVIP10FH_16p11.1a ### chr16 rmsk gene 35594879 35600721 . - . gene_id "HERVIP10FH_16p11.1a"; transcript_id "HERVIP10FH_16p11.1a"; locus "HERVIP10FH_16p11.1a"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0153"; model_cov "3537"; model_pct "69.3"; chr16 rmsk exon 35594879 35595466 4834 - . gene_id "HERVIP10FH_16p11.1a"; transcript_id "HERVIP10FH_16p11.1a"; locus "HERVIP10FH_16p11.1a"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0153"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 35596015 35598743 9060 - . gene_id "HERVIP10FH_16p11.1a"; transcript_id "HERVIP10FH_16p11.1a"; locus "HERVIP10FH_16p11.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0153"; repClass "LTR"; repEnd "4716"; repFamily "ERV1"; repLeft "2041"; repStart "-386"; chr16 rmsk exon 35599227 35600133 4389 - . gene_id "HERVIP10FH_16p11.1a"; transcript_id "HERVIP10FH_16p11.1a"; locus "HERVIP10FH_16p11.1a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0153"; repClass "LTR"; repEnd "863"; repFamily "ERV1"; repLeft "1"; repStart "-4239"; chr16 rmsk exon 35600134 35600721 4683 - . gene_id "HERVIP10FH_16p11.1a"; transcript_id "HERVIP10FH_16p11.1a"; locus "HERVIP10FH_16p11.1a"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0153"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_16p11.1 ### chr16 rmsk gene 35614639 35621364 . - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0149"; model_cov "5909"; model_pct "85.7"; chr16 rmsk exon 35614639 35615094 3165 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 35615095 35616042 6480 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "5937"; repStart "-1"; chr16 rmsk exon 35616038 35616609 3223 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "5124"; repFamily "ERV1"; repLeft "4552"; repStart "-1772"; chr16 rmsk exon 35616599 35616699 642 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "4069"; repStart "-2728"; chr16 rmsk exon 35616695 35617027 1911 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "3979"; repFamily "ERV1"; repLeft "3644"; repStart "-2917"; chr16 rmsk exon 35617008 35619476 15168 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "3949"; repFamily "ERV1"; repLeft "1421"; repStart "-2947"; chr16 rmsk exon 35619510 35620898 11784 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "3"; repStart "-5476"; chr16 rmsk exon 35620901 35621364 3235 - . gene_id "HARLEQUIN_16p11.1"; transcript_id "HARLEQUIN_16p11.1"; locus "HARLEQUIN_16p11.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0149"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_16p11.1b ### chr16 rmsk gene 35721970 35723346 . - . gene_id "HERVIP10FH_16p11.1b"; transcript_id "HERVIP10FH_16p11.1b"; locus "HERVIP10FH_16p11.1b"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0154"; model_cov "537"; model_pct "10.5"; chr16 rmsk exon 35721970 35722072 691 - . gene_id "HERVIP10FH_16p11.1b"; transcript_id "HERVIP10FH_16p11.1b"; locus "HERVIP10FH_16p11.1b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0154"; repClass "LTR"; repEnd "104"; repFamily "ERV1"; repLeft "1"; repStart "-529"; chr16 rmsk exon 35722145 35722249 391 - . gene_id "HERVIP10FH_16p11.1b"; transcript_id "HERVIP10FH_16p11.1b"; locus "HERVIP10FH_16p11.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0154"; repClass "LTR"; repEnd "4938"; repFamily "ERV1"; repLeft "4842"; repStart "-164"; chr16 rmsk exon 35722642 35723173 2086 - . gene_id "HERVIP10FH_16p11.1b"; transcript_id "HERVIP10FH_16p11.1b"; locus "HERVIP10FH_16p11.1b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0154"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "22"; repStart "-4639"; chr16 rmsk exon 35723197 35723346 810 - . gene_id "HERVIP10FH_16p11.1b"; transcript_id "HERVIP10FH_16p11.1b"; locus "HERVIP10FH_16p11.1b"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0154"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "426"; repStart "-2"; ### HERVH_16p11.1 ### chr16 rmsk gene 35736424 35745766 . - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1088"; model_cov "7415"; model_pct "96.1"; chr16 rmsk exon 35736424 35736891 3214 - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1088"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 35736972 35737030 257 - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1088"; repClass "LTR"; repEnd "7621"; repFamily "ERV1"; repLeft "7564"; repStart "-92"; chr16 rmsk exon 35737871 35739740 9332 - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1088"; repClass "LTR"; repEnd "7557"; repFamily "ERV1"; repLeft "5713"; repStart "-156"; chr16 rmsk exon 35739757 35745299 22507 - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1088"; repClass "LTR"; repEnd "5515"; repFamily "ERV1"; repLeft "1"; repStart "-2198"; chr16 rmsk exon 35745301 35745766 3222 - . gene_id "HERVH_16p11.1"; transcript_id "HERVH_16p11.1"; locus "HERVH_16p11.1"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1088"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HML5_16p11.1a ### chr16 rmsk gene 35797757 35801819 . + . gene_id "HML5_16p11.1a"; transcript_id "HML5_16p11.1a"; locus "HML5_16p11.1a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0107"; model_cov "2883"; model_pct "42.2"; chr16 rmsk exon 35797757 35798250 3540 + . gene_id "HML5_16p11.1a"; transcript_id "HML5_16p11.1a"; locus "HML5_16p11.1a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0107"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr16 rmsk exon 35798253 35798966 4456 + . gene_id "HML5_16p11.1a"; transcript_id "HML5_16p11.1a"; locus "HML5_16p11.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0107"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "-6096"; repStart "3"; chr16 rmsk exon 35799396 35800662 13765 + . gene_id "HML5_16p11.1a"; transcript_id "HML5_16p11.1a"; locus "HML5_16p11.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0107"; repClass "LTR"; repEnd "3632"; repFamily "ERVK"; repLeft "-3205"; repStart "2327"; chr16 rmsk exon 35800985 35801819 13765 + . gene_id "HML5_16p11.1a"; transcript_id "HML5_16p11.1a"; locus "HML5_16p11.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0107"; repClass "LTR"; repEnd "4473"; repFamily "ERVK"; repLeft "-2364"; repStart "3633"; ### HERVKC4_16p11.1 ### chr16 rmsk gene 35803283 35804041 . + . gene_id "HERVKC4_16p11.1"; transcript_id "HERVKC4_16p11.1"; locus "HERVKC4_16p11.1"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0020"; model_cov "710"; model_pct "13.5"; chr16 rmsk exon 35803283 35804041 3577 + . gene_id "HERVKC4_16p11.1"; transcript_id "HERVKC4_16p11.1"; locus "HERVKC4_16p11.1"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0020"; repClass "LTR"; repEnd "3525"; repFamily "ERVK"; repLeft "-1737"; repStart "2815"; ### MER101_16p11.1a ### chr16 rmsk gene 35816009 35819288 . + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0359"; model_cov "1756"; model_pct "26.4"; chr16 rmsk exon 35816009 35816150 767 + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0359"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-4"; repStart "299"; chr16 rmsk exon 35816313 35816714 4454 + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0359"; repClass "LTR"; repEnd "2647"; repFamily "ERV1"; repLeft "-3992"; repStart "2252"; chr16 rmsk exon 35817228 35817366 4454 + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0359"; repClass "LTR"; repEnd "2792"; repFamily "ERV1"; repLeft "-3847"; repStart "2648"; chr16 rmsk exon 35817624 35818013 4454 + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0359"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-3177"; repStart "2751"; chr16 rmsk exon 35819014 35819288 4454 + . gene_id "MER101_16p11.1a"; transcript_id "MER101_16p11.1a"; locus "MER101_16p11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0359"; repClass "LTR"; repEnd "3969"; repFamily "ERV1"; repLeft "-2670"; repStart "3463"; ### LTR57_16p11.1 ### chr16 rmsk gene 35818014 35819013 . + . gene_id "LTR57_16p11.1"; transcript_id "LTR57_16p11.1"; locus "LTR57_16p11.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0153"; model_cov "1014"; model_pct "19.0"; chr16 rmsk exon 35818014 35819013 1517 + . gene_id "LTR57_16p11.1"; transcript_id "LTR57_16p11.1"; locus "LTR57_16p11.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0153"; repClass "LTR"; repEnd "1572"; repFamily "ERVL"; repLeft "-3771"; repStart "558"; ### MER101_16p11.1b ### chr16 rmsk gene 35819388 35820979 . + . gene_id "MER101_16p11.1b"; transcript_id "MER101_16p11.1b"; locus "MER101_16p11.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0360"; model_cov "1999"; model_pct "30.1"; chr16 rmsk exon 35819388 35820979 6732 + . gene_id "MER101_16p11.1b"; transcript_id "MER101_16p11.1b"; locus "MER101_16p11.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0360"; repClass "LTR"; repEnd "3739"; repFamily "ERV1"; repLeft "-2900"; repStart "1740"; ### HML5_16p11.1b ### chr16 rmsk gene 35855248 35857210 . + . gene_id "HML5_16p11.1b"; transcript_id "HML5_16p11.1b"; locus "HML5_16p11.1b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0109"; model_cov "980"; model_pct "14.3"; chr16 rmsk exon 35855248 35855746 3407 + . gene_id "HML5_16p11.1b"; transcript_id "HML5_16p11.1b"; locus "HML5_16p11.1b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0109"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr16 rmsk exon 35855763 35856058 1852 + . gene_id "HML5_16p11.1b"; transcript_id "HML5_16p11.1b"; locus "HML5_16p11.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0109"; repClass "LTR"; repEnd "313"; repFamily "ERVK"; repLeft "-6524"; repStart "1"; chr16 rmsk exon 35856056 35856738 4673 + . gene_id "HML5_16p11.1b"; transcript_id "HML5_16p11.1b"; locus "HML5_16p11.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0109"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "6169"; chr16 rmsk exon 35856739 35857210 2631 + . gene_id "HML5_16p11.1b"; transcript_id "HML5_16p11.1b"; locus "HML5_16p11.1b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0109"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "0"; repStart "-1"; ### MER101_16p11.1c ### chr16 rmsk gene 35858777 35861033 . + . gene_id "MER101_16p11.1c"; transcript_id "MER101_16p11.1c"; locus "MER101_16p11.1c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0361"; model_cov "2720"; model_pct "41.0"; chr16 rmsk exon 35858777 35858848 353 + . gene_id "MER101_16p11.1c"; transcript_id "MER101_16p11.1c"; locus "MER101_16p11.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0361"; repClass "LTR"; repEnd "190"; repFamily "ERV1"; repLeft "-6449"; repStart "132"; chr16 rmsk exon 35859104 35860894 3080 + . gene_id "MER101_16p11.1c"; transcript_id "MER101_16p11.1c"; locus "MER101_16p11.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0361"; repClass "LTR"; repEnd "5045"; repFamily "ERV1"; repLeft "-1594"; repStart "2484"; chr16 rmsk exon 35860932 35861033 542 + . gene_id "MER101_16p11.1c"; transcript_id "MER101_16p11.1c"; locus "MER101_16p11.1c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0361"; repClass "LTR"; repEnd "5910"; repFamily "ERV1"; repLeft "-729"; repStart "5809"; ### HERVS71_16p11.1 ### chr16 rmsk gene 35897003 35902579 . - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; category "unknown"; intModel "HERVS71-int"; locid "HERVS71-int_0042"; model_cov "4273"; model_pct "47.6"; chr16 rmsk exon 35897003 35897577 3984 - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0042"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr16 rmsk exon 35897578 35901340 23689 - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0042"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "5123"; repStart "-69"; chr16 rmsk exon 35901435 35901505 484 - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0042"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "495"; repStart "0"; chr16 rmsk exon 35901523 35902013 2006 - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0042"; repClass "LTR"; repEnd "491"; repFamily "ERV1"; repLeft "4"; repStart "-8487"; chr16 rmsk exon 35902016 35902579 4064 - . gene_id "HERVS71_16p11.1"; transcript_id "HERVS71_16p11.1"; locus "HERVS71_16p11.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0042"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH48_16p11.1 ### chr16 rmsk gene 35903115 35910785 . - . gene_id "HERVH48_16p11.1"; transcript_id "HERVH48_16p11.1"; locus "HERVH48_16p11.1"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0045"; model_cov "6214"; model_pct "93.4"; chr16 rmsk exon 35903115 35903558 2142 - . gene_id "HERVH48_16p11.1"; transcript_id "HERVH48_16p11.1"; locus "HERVH48_16p11.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0045"; repClass "LTR"; repEnd "6187"; repFamily "ERV1"; repLeft "5794"; repStart "-467"; chr16 rmsk exon 35904670 35910398 35486 - . gene_id "HERVH48_16p11.1"; transcript_id "HERVH48_16p11.1"; locus "HERVH48_16p11.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0045"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "2"; repStart "-831"; chr16 rmsk exon 35910400 35910785 2598 - . gene_id "HERVH48_16p11.1"; transcript_id "HERVH48_16p11.1"; locus "HERVH48_16p11.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0045"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_16q11.2 ### chr16 rmsk gene 46469264 46473470 . - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0119"; model_cov "1853"; model_pct "28.3"; chr16 rmsk exon 46469264 46469407 263 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "MER51D"; geneRegion "ltr"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "514"; repStart "-24"; chr16 rmsk exon 46469803 46470001 458 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "6534"; repFamily "ERV1"; repLeft "6341"; repStart "-5"; chr16 rmsk exon 46470055 46470182 289 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "6331"; repFamily "ERV1"; repLeft "6205"; repStart "-208"; chr16 rmsk exon 46470218 46470555 292 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "6061"; repFamily "ERV1"; repLeft "5720"; repStart "-478"; chr16 rmsk exon 46472134 46472865 949 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "3736"; repStart "-1855"; chr16 rmsk exon 46473058 46473470 736 - . gene_id "HERV4_16q11.2"; transcript_id "HERV4_16q11.2"; locus "HERV4_16q11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0119"; repClass "LTR"; repEnd "1255"; repFamily "ERV1"; repLeft "1010"; repStart "-5284"; ### MER61_16q12.1 ### chr16 rmsk gene 47489299 47493193 . - . gene_id "MER61_16q12.1"; transcript_id "MER61_16q12.1"; locus "MER61_16q12.1"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0334"; model_cov "3570"; model_pct "68.4"; chr16 rmsk exon 47489299 47492019 15208 - . gene_id "MER61_16q12.1"; transcript_id "MER61_16q12.1"; locus "MER61_16q12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0334"; repClass "LTR"; repEnd "3691"; repFamily "ERV1"; repLeft "958"; repStart "-1526"; chr16 rmsk exon 47492020 47492858 4613 - . gene_id "MER61_16q12.1"; transcript_id "MER61_16q12.1"; locus "MER61_16q12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0334"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "3"; repStart "-4377"; chr16 rmsk exon 47492860 47493193 1671 - . gene_id "MER61_16q12.1"; transcript_id "MER61_16q12.1"; locus "MER61_16q12.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0334"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_16q12.1a ### chr16 rmsk gene 47755805 47756364 . - . gene_id "ERVLE_16q12.1a"; transcript_id "ERVLE_16q12.1a"; locus "ERVLE_16q12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3213"; model_cov "570"; model_pct "10.1"; chr16 rmsk exon 47755805 47756364 979 - . gene_id "ERVLE_16q12.1a"; transcript_id "ERVLE_16q12.1a"; locus "ERVLE_16q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3213"; repClass "LTR"; repEnd "1960"; repFamily "ERVL"; repLeft "1390"; repStart "-3707"; ### HERVH_16q12.1a ### chr16 rmsk gene 47838741 47844564 . + . gene_id "HERVH_16q12.1a"; transcript_id "HERVH_16q12.1a"; locus "HERVH_16q12.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1089"; model_cov "5741"; model_pct "74.4"; chr16 rmsk exon 47838741 47839150 2593 + . gene_id "HERVH_16q12.1a"; transcript_id "HERVH_16q12.1a"; locus "HERVH_16q12.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1089"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr16 rmsk exon 47839163 47843984 26127 + . gene_id "HERVH_16q12.1a"; transcript_id "HERVH_16q12.1a"; locus "HERVH_16q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1089"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "1"; chr16 rmsk exon 47843989 47844199 1360 + . gene_id "HERVH_16q12.1a"; transcript_id "HERVH_16q12.1a"; locus "HERVH_16q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1089"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr16 rmsk exon 47844200 47844564 2267 + . gene_id "HERVH_16q12.1a"; transcript_id "HERVH_16q12.1a"; locus "HERVH_16q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1089"; repClass "LTR"; repEnd "7701"; repFamily "ERV1"; repLeft "-12"; repStart "7324"; ### ERVLE_16q12.1b ### chr16 rmsk gene 48678466 48679181 . - . gene_id "ERVLE_16q12.1b"; transcript_id "ERVLE_16q12.1b"; locus "ERVLE_16q12.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3215"; model_cov "755"; model_pct "13.3"; chr16 rmsk exon 48678466 48679181 1110 - . gene_id "ERVLE_16q12.1b"; transcript_id "ERVLE_16q12.1b"; locus "ERVLE_16q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3215"; repClass "LTR"; repEnd "760"; repFamily "ERVL"; repLeft "5"; repStart "-4907"; ### ERV316A3_16q12.1a ### chr16 rmsk gene 49100649 49107489 . - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2422"; model_cov "5066"; model_pct "96.9"; chr16 rmsk exon 49100649 49100755 508 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "330"; repStart "-2"; chr16 rmsk exon 49100747 49100968 576 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "227"; repFamily "ERVL"; repLeft "5"; repStart "-211"; chr16 rmsk exon 49101044 49104297 9514 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "1731"; repStart "-142"; chr16 rmsk exon 49104614 49105686 9514 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "1730"; repFamily "ERVL"; repLeft "661"; repStart "-3496"; chr16 rmsk exon 49106071 49106489 9514 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "660"; repFamily "ERVL"; repLeft "265"; repStart "-4566"; chr16 rmsk exon 49106780 49107044 9514 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "259"; repFamily "ERVL"; repLeft "10"; repStart "-4967"; chr16 rmsk exon 49107059 49107489 1229 - . gene_id "ERV316A3_16q12.1a"; transcript_id "ERV316A3_16q12.1a"; locus "ERV316A3_16q12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2422"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "3"; repStart "-2"; ### ERVLB4_16q12.1 ### chr16 rmsk gene 50128785 50137870 . - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1553"; model_cov "4613"; model_pct "80.7"; chr16 rmsk exon 50128785 50129285 1690 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr16 rmsk exon 50129287 50129501 1235 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5497"; repStart "0"; chr16 rmsk exon 50131289 50131416 6527 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "5501"; repFamily "ERVL"; repLeft "5351"; repStart "-213"; chr16 rmsk exon 50131759 50132352 6527 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "5350"; repFamily "ERVL"; repLeft "4778"; repStart "-364"; chr16 rmsk exon 50132683 50132758 6527 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "4777"; repFamily "ERVL"; repLeft "4703"; repStart "-937"; chr16 rmsk exon 50133070 50133432 6527 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "4702"; repFamily "ERVL"; repLeft "4351"; repStart "-1012"; chr16 rmsk exon 50133630 50134635 16007 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "4362"; repFamily "ERVL"; repLeft "3338"; repStart "-1352"; chr16 rmsk exon 50134914 50135595 16007 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "2664"; repStart "-2377"; chr16 rmsk exon 50135994 50136832 16007 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "2663"; repFamily "ERVL"; repLeft "1829"; repStart "-3051"; chr16 rmsk exon 50137161 50137870 3898 - . gene_id "ERVLB4_16q12.1"; transcript_id "ERVLB4_16q12.1"; locus "ERVLB4_16q12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1553"; repClass "LTR"; repEnd "1838"; repFamily "ERVL"; repLeft "1120"; repStart "-3876"; ### MER4B_16q12.1 ### chr16 rmsk gene 50330448 50330982 . + . gene_id "MER4B_16q12.1"; transcript_id "MER4B_16q12.1"; locus "MER4B_16q12.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0413"; model_cov "916"; model_pct "13.6"; chr16 rmsk exon 50330448 50330982 1306 + . gene_id "MER4B_16q12.1"; transcript_id "MER4B_16q12.1"; locus "MER4B_16q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0413"; repClass "LTR"; repEnd "2936"; repFamily "ERV1"; repLeft "-3822"; repStart "2020"; ### ERV316A3_16q12.1b ### chr16 rmsk gene 50895371 50898985 . + . gene_id "ERV316A3_16q12.1b"; transcript_id "ERV316A3_16q12.1b"; locus "ERV316A3_16q12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2423"; model_cov "2134"; model_pct "40.8"; chr16 rmsk exon 50895371 50896078 1894 + . gene_id "ERV316A3_16q12.1b"; transcript_id "ERV316A3_16q12.1b"; locus "ERV316A3_16q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2423"; repClass "LTR"; repEnd "1806"; repFamily "ERVL"; repLeft "-3420"; repStart "1001"; chr16 rmsk exon 50897674 50898985 5834 + . gene_id "ERV316A3_16q12.1b"; transcript_id "ERV316A3_16q12.1b"; locus "ERV316A3_16q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2423"; repClass "LTR"; repEnd "4928"; repFamily "ERVL"; repLeft "-298"; repStart "3599"; ### HERVH_16q12.1b ### chr16 rmsk gene 52216073 52217397 . - . gene_id "HERVH_16q12.1b"; transcript_id "HERVH_16q12.1b"; locus "HERVH_16q12.1b"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_1090"; model_cov "1351"; model_pct "17.5"; chr16 rmsk exon 52216073 52217054 6239 - . gene_id "HERVH_16q12.1b"; transcript_id "HERVH_16q12.1b"; locus "HERVH_16q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1090"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "3994"; repStart "-2701"; chr16 rmsk exon 52217066 52217315 1439 - . gene_id "HERVH_16q12.1b"; transcript_id "HERVH_16q12.1b"; locus "HERVH_16q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1090"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "3492"; repStart "-3977"; chr16 rmsk exon 52217306 52217397 483 - . gene_id "HERVH_16q12.1b"; transcript_id "HERVH_16q12.1b"; locus "HERVH_16q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1090"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3201"; repStart "-4423"; ### ERVL_16q12.1 ### chr16 rmsk gene 52356643 52359722 . + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0399"; model_cov "2200"; model_pct "38.2"; chr16 rmsk exon 52356643 52356836 334 + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0399"; repClass "LTR"; repEnd "588"; repFamily "ERVL"; repLeft "-5169"; repStart "366"; chr16 rmsk exon 52357143 52357776 1155 + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0399"; repClass "LTR"; repEnd "1569"; repFamily "ERVL"; repLeft "-4188"; repStart "853"; chr16 rmsk exon 52358169 52359012 1155 + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0399"; repClass "LTR"; repEnd "2512"; repFamily "ERVL"; repLeft "-3245"; repStart "1480"; chr16 rmsk exon 52359059 52359283 1219 + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0399"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5527"; chr16 rmsk exon 52359291 52359722 1676 + . gene_id "ERVL_16q12.1"; transcript_id "ERVL_16q12.1"; locus "ERVL_16q12.1"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0399"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-83"; repStart "8"; ### ERVLE_16q12.1c ### chr16 rmsk gene 52361747 52363494 . + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3216"; model_cov "1362"; model_pct "24.0"; chr16 rmsk exon 52361747 52361844 254 + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3216"; repClass "LTR"; repEnd "2597"; repFamily "ERVL"; repLeft "-3070"; repStart "2500"; chr16 rmsk exon 52361840 52362089 372 + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3216"; repClass "LTR"; repEnd "3245"; repFamily "ERVL"; repLeft "-2422"; repStart "2976"; chr16 rmsk exon 52362378 52362483 381 + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3216"; repClass "LTR"; repEnd "3712"; repFamily "ERVL"; repLeft "-1955"; repStart "3618"; chr16 rmsk exon 52362563 52362771 722 + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3216"; repClass "LTR"; repEnd "4096"; repFamily "ERVL"; repLeft "-1571"; repStart "3875"; chr16 rmsk exon 52362814 52363494 1290 + . gene_id "ERVLE_16q12.1c"; transcript_id "ERVLE_16q12.1c"; locus "ERVLE_16q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3216"; repClass "LTR"; repEnd "4890"; repFamily "ERVL"; repLeft "-777"; repStart "4209"; ### ERV316A3_16q12.2a ### chr16 rmsk gene 52916110 52918140 . - . gene_id "ERV316A3_16q12.2a"; transcript_id "ERV316A3_16q12.2a"; locus "ERV316A3_16q12.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2426"; model_cov "1320"; model_pct "25.3"; chr16 rmsk exon 52916110 52917245 3162 - . gene_id "ERV316A3_16q12.2a"; transcript_id "ERV316A3_16q12.2a"; locus "ERV316A3_16q12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2426"; repClass "LTR"; repEnd "2345"; repFamily "ERVL"; repLeft "1256"; repStart "-2881"; chr16 rmsk exon 52917928 52918140 3162 - . gene_id "ERV316A3_16q12.2a"; transcript_id "ERV316A3_16q12.2a"; locus "ERV316A3_16q12.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2426"; repClass "LTR"; repEnd "1255"; repFamily "ERVL"; repLeft "1024"; repStart "-3971"; ### ERVLE_16q12.2 ### chr16 rmsk gene 53577294 53579374 . - . gene_id "ERVLE_16q12.2"; transcript_id "ERVLE_16q12.2"; locus "ERVLE_16q12.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3217"; model_cov "1686"; model_pct "29.8"; chr16 rmsk exon 53577294 53577661 2653 - . gene_id "ERVLE_16q12.2"; transcript_id "ERVLE_16q12.2"; locus "ERVLE_16q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3217"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4378"; repStart "-888"; chr16 rmsk exon 53578255 53579374 2653 - . gene_id "ERVLE_16q12.2"; transcript_id "ERVLE_16q12.2"; locus "ERVLE_16q12.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3217"; repClass "LTR"; repEnd "4519"; repFamily "ERVL"; repLeft "3234"; repStart "-1148"; ### ERV316A3_16q12.2b ### chr16 rmsk gene 55114281 55116183 . + . gene_id "ERV316A3_16q12.2b"; transcript_id "ERV316A3_16q12.2b"; locus "ERV316A3_16q12.2b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2427"; model_cov "1304"; model_pct "25.0"; chr16 rmsk exon 55114281 55114446 578 + . gene_id "ERV316A3_16q12.2b"; transcript_id "ERV316A3_16q12.2b"; locus "ERV316A3_16q12.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2427"; repClass "LTR"; repEnd "177"; repFamily "ERVL"; repLeft "-285"; repStart "1"; chr16 rmsk exon 55114583 55115866 2543 + . gene_id "ERV316A3_16q12.2b"; transcript_id "ERV316A3_16q12.2b"; locus "ERV316A3_16q12.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2427"; repClass "LTR"; repEnd "1309"; repFamily "ERVL"; repLeft "-3917"; repStart "5"; chr16 rmsk exon 55115899 55116183 941 + . gene_id "ERV316A3_16q12.2b"; transcript_id "ERV316A3_16q12.2b"; locus "ERV316A3_16q12.2b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2427"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-89"; repStart "67"; ### HERVFRD_16q12.2 ### chr16 rmsk gene 55628434 55635551 . + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; category "unknown"; intModel "MER50-int"; locid "MER50-int_0159"; model_cov "5594"; model_pct "77.6"; chr16 rmsk exon 55628434 55629137 4222 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0159"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chr16 rmsk exon 55629138 55629197 436 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0159"; repClass "LTR"; repEnd "66"; repFamily "ERV1"; repLeft "-7139"; repStart "7"; chr16 rmsk exon 55629199 55629458 1243 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0159"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "-213"; repStart "233"; chr16 rmsk exon 55629464 55631171 6521 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0159"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "67"; chr16 rmsk exon 55631169 55634537 18291 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0159"; repClass "LTR"; repEnd "6206"; repFamily "ERV1"; repLeft "-999"; repStart "2788"; chr16 rmsk exon 55634518 55634855 2422 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0159"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6862"; chr16 rmsk exon 55634856 55635551 4494 + . gene_id "HERVFRD_16q12.2"; transcript_id "HERVFRD_16q12.2"; locus "HERVFRD_16q12.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0159"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERV316A3_16q12.2c ### chr16 rmsk gene 55882267 55884134 . - . gene_id "ERV316A3_16q12.2c"; transcript_id "ERV316A3_16q12.2c"; locus "ERV316A3_16q12.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2428"; model_cov "1717"; model_pct "32.9"; chr16 rmsk exon 55882267 55883263 4822 - . gene_id "ERV316A3_16q12.2c"; transcript_id "ERV316A3_16q12.2c"; locus "ERV316A3_16q12.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2428"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "1693"; repStart "-2330"; chr16 rmsk exon 55883571 55884134 4822 - . gene_id "ERV316A3_16q12.2c"; transcript_id "ERV316A3_16q12.2c"; locus "ERV316A3_16q12.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2428"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1666"; repStart "-3046"; ### ERV316A3_16q12.2d ### chr16 rmsk gene 55884185 55885814 . - . gene_id "ERV316A3_16q12.2d"; transcript_id "ERV316A3_16q12.2d"; locus "ERV316A3_16q12.2d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2429"; model_cov "827"; model_pct "15.8"; chr16 rmsk exon 55884185 55884592 4822 - . gene_id "ERV316A3_16q12.2d"; transcript_id "ERV316A3_16q12.2d"; locus "ERV316A3_16q12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2429"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1807"; repStart "-3046"; chr16 rmsk exon 55884892 55884947 4822 - . gene_id "ERV316A3_16q12.2d"; transcript_id "ERV316A3_16q12.2d"; locus "ERV316A3_16q12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2429"; repClass "LTR"; repEnd "1291"; repFamily "ERVL"; repLeft "1236"; repStart "-3935"; chr16 rmsk exon 55884967 55885358 942 - . gene_id "ERV316A3_16q12.2d"; transcript_id "ERV316A3_16q12.2d"; locus "ERV316A3_16q12.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2429"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "13"; repStart "-4814"; chr16 rmsk exon 55885386 55885814 1370 - . gene_id "ERV316A3_16q12.2d"; transcript_id "ERV316A3_16q12.2d"; locus "ERV316A3_16q12.2d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2429"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "2"; repStart "-21"; ### ERV316A3_16q12.2e ### chr16 rmsk gene 55885817 55887445 . + . gene_id "ERV316A3_16q12.2e"; transcript_id "ERV316A3_16q12.2e"; locus "ERV316A3_16q12.2e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2430"; model_cov "1483"; model_pct "28.4"; chr16 rmsk exon 55885817 55885882 275 + . gene_id "ERV316A3_16q12.2e"; transcript_id "ERV316A3_16q12.2e"; locus "ERV316A3_16q12.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2430"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2244"; repStart "2917"; chr16 rmsk exon 55885897 55887445 2014 + . gene_id "ERV316A3_16q12.2e"; transcript_id "ERV316A3_16q12.2e"; locus "ERV316A3_16q12.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2430"; repClass "LTR"; repEnd "4804"; repFamily "ERVL"; repLeft "-422"; repStart "3386"; ### ERVL_16q13 ### chr16 rmsk gene 56093208 56095519 . - . gene_id "ERVL_16q13"; transcript_id "ERVL_16q13"; locus "ERVL_16q13"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0400"; model_cov "1484"; model_pct "25.8"; chr16 rmsk exon 56093208 56093587 1540 - . gene_id "ERVL_16q13"; transcript_id "ERVL_16q13"; locus "ERVL_16q13"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0400"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "177"; repStart "0"; chr16 rmsk exon 56093588 56093793 10118 - . gene_id "ERVL_16q13"; transcript_id "ERVL_16q13"; locus "ERVL_16q13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0400"; repClass "LTR"; repEnd "3518"; repFamily "ERVL"; repLeft "3324"; repStart "-2239"; chr16 rmsk exon 56094184 56095519 10118 - . gene_id "ERVL_16q13"; transcript_id "ERVL_16q13"; locus "ERVL_16q13"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0400"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "2033"; repStart "-2434"; ### ERVLB4_16q13a ### chr16 rmsk gene 56612708 56615580 . - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1557"; model_cov "1323"; model_pct "23.2"; chr16 rmsk exon 56612708 56613017 1949 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "123"; repStart "0"; chr16 rmsk exon 56613362 56613488 1949 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "1"; repStart "-292"; chr16 rmsk exon 56613489 56613790 4157 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5373"; repStart "-1"; chr16 rmsk exon 56613822 56614220 4157 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "4976"; repStart "-342"; chr16 rmsk exon 56614553 56614725 4157 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "4975"; repFamily "ERVL"; repLeft "4802"; repStart "-739"; chr16 rmsk exon 56614721 56614827 1818 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "1669"; repFamily "ERVL"; repLeft "1563"; repStart "-4045"; chr16 rmsk exon 56615127 56615439 1818 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "1562"; repFamily "ERVL"; repLeft "1254"; repStart "-4152"; chr16 rmsk exon 56615442 56615580 816 - . gene_id "ERVLB4_16q13a"; transcript_id "ERVLB4_16q13a"; locus "ERVLB4_16q13a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1557"; repClass "LTR"; repEnd "139"; repFamily "ERVL"; repLeft "1"; repStart "-275"; ### ERVLB4_16q13b ### chr16 rmsk gene 56947521 56950172 . + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1558"; model_cov "1265"; model_pct "22.1"; chr16 rmsk exon 56947521 56947700 806 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-5265"; repStart "262"; chr16 rmsk exon 56947779 56948082 2321 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "748"; repFamily "ERVL"; repLeft "-4966"; repStart "441"; chr16 rmsk exon 56948398 56948777 2321 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "1127"; repFamily "ERVL"; repLeft "-4587"; repStart "749"; chr16 rmsk exon 56948814 56948840 2321 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "-4546"; repStart "1128"; chr16 rmsk exon 56948855 56948947 1312 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "5409"; repFamily "ERVL"; repLeft "-305"; repStart "5354"; chr16 rmsk exon 56949242 56949502 1312 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "-6"; repStart "5410"; chr16 rmsk exon 56949508 56949566 1003 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "61"; repFamily "ERVL"; repLeft "-336"; repStart "1"; chr16 rmsk exon 56949880 56950172 1003 + . gene_id "ERVLB4_16q13b"; transcript_id "ERVLB4_16q13b"; locus "ERVLB4_16q13b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1558"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "62"; ### HERV9_16q21 ### chr16 rmsk gene 57394802 57399143 . - . gene_id "HERV9_16q21"; transcript_id "HERV9_16q21"; locus "HERV9_16q21"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0167"; model_cov "3719"; model_pct "44.1"; chr16 rmsk exon 57394802 57395466 3185 - . gene_id "HERV9_16q21"; transcript_id "HERV9_16q21"; locus "HERV9_16q21"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0167"; repClass "LTR"; repEnd "273"; repFamily "ERV1"; repLeft "-306"; repStart "-246"; chr16 rmsk exon 57395467 57396953 11614 - . gene_id "HERV9_16q21"; transcript_id "HERV9_16q21"; locus "HERV9_16q21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0167"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "6935"; repStart "0"; chr16 rmsk exon 57396955 57399143 17158 - . gene_id "HERV9_16q21"; transcript_id "HERV9_16q21"; locus "HERV9_16q21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0167"; repClass "LTR"; repEnd "5584"; repFamily "ERV1"; repLeft "3366"; repStart "-2852"; ### ERV316A3_16q21a ### chr16 rmsk gene 58247275 58248778 . - . gene_id "ERV316A3_16q21a"; transcript_id "ERV316A3_16q21a"; locus "ERV316A3_16q21a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2431"; model_cov "827"; model_pct "15.8"; chr16 rmsk exon 58247275 58247409 334 - . gene_id "ERV316A3_16q21a"; transcript_id "ERV316A3_16q21a"; locus "ERV316A3_16q21a"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2431"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "280"; repStart "0"; chr16 rmsk exon 58247917 58248778 2637 - . gene_id "ERV316A3_16q21a"; transcript_id "ERV316A3_16q21a"; locus "ERV316A3_16q21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2431"; repClass "LTR"; repEnd "3622"; repFamily "ERVL"; repLeft "2795"; repStart "-1604"; ### MER4B_16q21a ### chr16 rmsk gene 58307595 58317295 . + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0416"; model_cov "5300"; model_pct "78.4"; chr16 rmsk exon 58307595 58307993 2376 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "382"; repFamily "ERV1"; repLeft "-228"; repStart "1"; chr16 rmsk exon 58308003 58308173 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "1587"; repFamily "ERV1"; repLeft "-5171"; repStart "1424"; chr16 rmsk exon 58308473 58309105 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "2162"; repFamily "ERV1"; repLeft "-4596"; repStart "1588"; chr16 rmsk exon 58309439 58309520 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "2235"; repFamily "ERV1"; repLeft "-4523"; repStart "2163"; chr16 rmsk exon 58309828 58309889 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "2286"; repFamily "ERV1"; repLeft "-4472"; repStart "2236"; chr16 rmsk exon 58310186 58312189 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "4291"; repFamily "ERV1"; repLeft "-2467"; repStart "2287"; chr16 rmsk exon 58312743 58313165 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "4706"; repFamily "ERV1"; repLeft "-2052"; repStart "4292"; chr16 rmsk exon 58313531 58314900 29390 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "6037"; repFamily "ERV1"; repLeft "-721"; repStart "4707"; chr16 rmsk exon 58314952 58315280 1802 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "6359"; repFamily "ERV1"; repLeft "-399"; repStart "6042"; chr16 rmsk exon 58315659 58315845 2295 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "6533"; repFamily "ERV1"; repLeft "-225"; repStart "6381"; chr16 rmsk exon 58316142 58316368 2295 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6534"; chr16 rmsk exon 58316369 58316742 3151 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "321"; repFamily "ERV1"; repLeft "-289"; repStart "1"; chr16 rmsk exon 58317040 58317295 3151 + . gene_id "MER4B_16q21a"; transcript_id "MER4B_16q21a"; locus "MER4B_16q21a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0416"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "-95"; repStart "322"; ### ERVL_16q21a ### chr16 rmsk gene 59058257 59061249 . + . gene_id "ERVL_16q21a"; transcript_id "ERVL_16q21a"; locus "ERVL_16q21a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0401"; model_cov "2155"; model_pct "37.4"; chr16 rmsk exon 59058257 59060375 12291 + . gene_id "ERVL_16q21a"; transcript_id "ERVL_16q21a"; locus "ERVL_16q21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0401"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3602"; chr16 rmsk exon 59060383 59060597 1194 + . gene_id "ERVL_16q21a"; transcript_id "ERVL_16q21a"; locus "ERVL_16q21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0401"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "-298"; repStart "8"; chr16 rmsk exon 59060630 59060680 1194 + . gene_id "ERVL_16q21a"; transcript_id "ERVL_16q21a"; locus "ERVL_16q21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0401"; repClass "LTR"; repEnd "272"; repFamily "ERVL"; repLeft "-248"; repStart "223"; chr16 rmsk exon 59061070 59061249 1094 + . gene_id "ERVL_16q21a"; transcript_id "ERVL_16q21a"; locus "ERVL_16q21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0401"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "298"; ### ERV316A3_16q21b ### chr16 rmsk gene 59119458 59120993 . - . gene_id "ERV316A3_16q21b"; transcript_id "ERV316A3_16q21b"; locus "ERV316A3_16q21b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2432"; model_cov "1075"; model_pct "20.6"; chr16 rmsk exon 59119458 59120155 3373 - . gene_id "ERV316A3_16q21b"; transcript_id "ERV316A3_16q21b"; locus "ERV316A3_16q21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2432"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4498"; repStart "0"; chr16 rmsk exon 59120612 59120993 3373 - . gene_id "ERV316A3_16q21b"; transcript_id "ERV316A3_16q21b"; locus "ERV316A3_16q21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2432"; repClass "LTR"; repEnd "4497"; repFamily "ERVL"; repLeft "4150"; repStart "-729"; ### ERV316A3_16q21c ### chr16 rmsk gene 59438684 59439943 . + . gene_id "ERV316A3_16q21c"; transcript_id "ERV316A3_16q21c"; locus "ERV316A3_16q21c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2433"; model_cov "1281"; model_pct "24.5"; chr16 rmsk exon 59438684 59439943 1563 + . gene_id "ERV316A3_16q21c"; transcript_id "ERV316A3_16q21c"; locus "ERV316A3_16q21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2433"; repClass "LTR"; repEnd "2861"; repFamily "ERVL"; repLeft "-2365"; repStart "1580"; ### HERVH_16q21a ### chr16 rmsk gene 59514911 59522964 . - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1091"; model_cov "7008"; model_pct "90.9"; chr16 rmsk exon 59514911 59515411 3366 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 59515412 59518882 27493 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4252"; repStart "0"; chr16 rmsk exon 59518881 59518945 453 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "4316"; repFamily "ERV1"; repLeft "4252"; repStart "-3397"; chr16 rmsk exon 59518944 59519834 5667 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "4316"; repFamily "ERV1"; repLeft "3492"; repStart "-3397"; chr16 rmsk exon 59519825 59519971 849 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3141"; repStart "-4423"; chr16 rmsk exon 59519967 59522399 16017 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "609"; repStart "-4726"; chr16 rmsk exon 59522394 59522526 1004 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "133"; repFamily "ERV1"; repLeft "1"; repStart "-7580"; chr16 rmsk exon 59522529 59522964 3477 - . gene_id "HERVH_16q21a"; transcript_id "HERVH_16q21a"; locus "HERVH_16q21a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1091"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_16q21a ### chr16 rmsk gene 59590524 59591669 . + . gene_id "ERVLB4_16q21a"; transcript_id "ERVLB4_16q21a"; locus "ERVLB4_16q21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1559"; model_cov "1202"; model_pct "21.0"; chr16 rmsk exon 59590524 59591669 5971 + . gene_id "ERVLB4_16q21a"; transcript_id "ERVLB4_16q21a"; locus "ERVLB4_16q21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1559"; repClass "LTR"; repEnd "2167"; repFamily "ERVL"; repLeft "-3547"; repStart "965"; ### HERVK11_16q21 ### chr16 rmsk gene 59621926 59625900 . - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0089"; model_cov "2412"; model_pct "30.3"; chr16 rmsk exon 59621926 59623014 7583 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 59623015 59624006 7921 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chr16 rmsk exon 59623992 59625117 8985 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "5626"; repStart "-1186"; chr16 rmsk exon 59625120 59625170 321 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "5571"; repFamily "ERVK"; repLeft "5525"; repStart "-2382"; chr16 rmsk exon 59625162 59625301 927 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "4462"; repStart "-3352"; chr16 rmsk exon 59625276 59625365 727 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "3884"; repFamily "ERVK"; repLeft "3794"; repStart "-4069"; chr16 rmsk exon 59625366 59625900 4367 - . gene_id "HERVK11_16q21"; transcript_id "HERVK11_16q21"; locus "HERVK11_16q21"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0089"; repClass "LTR"; repEnd "686"; repFamily "ERVK"; repLeft "-29"; repStart "-550"; ### ERVL_16q21b ### chr16 rmsk gene 59722341 59726114 . - . gene_id "ERVL_16q21b"; transcript_id "ERVL_16q21b"; locus "ERVL_16q21b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0403"; model_cov "915"; model_pct "15.9"; chr16 rmsk exon 59722341 59722812 2067 - . gene_id "ERVL_16q21b"; transcript_id "ERVL_16q21b"; locus "ERVL_16q21b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0403"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "4"; repStart "0"; chr16 rmsk exon 59722816 59723253 1480 - . gene_id "ERVL_16q21b"; transcript_id "ERVL_16q21b"; locus "ERVL_16q21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0403"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5322"; repStart "0"; chr16 rmsk exon 59725643 59726114 2923 - . gene_id "ERVL_16q21b"; transcript_id "ERVL_16q21b"; locus "ERVL_16q21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0403"; repClass "LTR"; repEnd "5262"; repFamily "ERVL"; repLeft "4782"; repStart "-495"; ### MER4B_16q21b ### chr16 rmsk gene 59856918 59858308 . - . gene_id "MER4B_16q21b"; transcript_id "MER4B_16q21b"; locus "MER4B_16q21b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0417"; model_cov "1831"; model_pct "27.1"; chr16 rmsk exon 59856918 59857751 2446 - . gene_id "MER4B_16q21b"; transcript_id "MER4B_16q21b"; locus "MER4B_16q21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0417"; repClass "LTR"; repEnd "2643"; repFamily "ERV1"; repLeft "1089"; repStart "-4115"; chr16 rmsk exon 59858059 59858308 2154 - . gene_id "MER4B_16q21b"; transcript_id "MER4B_16q21b"; locus "MER4B_16q21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0417"; repClass "LTR"; repEnd "2245"; repFamily "ERV1"; repLeft "1968"; repStart "-4513"; ### ERV316A3_16q21d ### chr16 rmsk gene 59888234 59889096 . + . gene_id "ERV316A3_16q21d"; transcript_id "ERV316A3_16q21d"; locus "ERV316A3_16q21d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2434"; model_cov "825"; model_pct "15.8"; chr16 rmsk exon 59888234 59888465 755 + . gene_id "ERV316A3_16q21d"; transcript_id "ERV316A3_16q21d"; locus "ERV316A3_16q21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2434"; repClass "LTR"; repEnd "1425"; repFamily "ERVL"; repLeft "-3801"; repStart "1180"; chr16 rmsk exon 59888513 59889096 1115 + . gene_id "ERV316A3_16q21d"; transcript_id "ERV316A3_16q21d"; locus "ERV316A3_16q21d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2434"; repClass "LTR"; repEnd "1820"; repFamily "ERVL"; repLeft "-3406"; repStart "1240"; ### HERVH_16q21b ### chr16 rmsk gene 60078535 60084578 . + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1092"; model_cov "4915"; model_pct "63.7"; chr16 rmsk exon 60078535 60078985 3464 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr16 rmsk exon 60078988 60082249 17053 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr16 rmsk exon 60082229 60082378 976 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr16 rmsk exon 60082370 60082868 3343 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3493"; chr16 rmsk exon 60082871 60083532 4374 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr16 rmsk exon 60083534 60083750 1390 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr16 rmsk exon 60083749 60084127 2563 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr16 rmsk exon 60084128 60084578 3504 + . gene_id "HERVH_16q21b"; transcript_id "HERVH_16q21b"; locus "HERVH_16q21b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1092"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_16q21e ### chr16 rmsk gene 60151953 60154175 . + . gene_id "ERV316A3_16q21e"; transcript_id "ERV316A3_16q21e"; locus "ERV316A3_16q21e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2435"; model_cov "1340"; model_pct "25.6"; chr16 rmsk exon 60151953 60152249 1470 + . gene_id "ERV316A3_16q21e"; transcript_id "ERV316A3_16q21e"; locus "ERV316A3_16q21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2435"; repClass "LTR"; repEnd "3981"; repFamily "ERVL"; repLeft "-1245"; repStart "3689"; chr16 rmsk exon 60152547 60153581 1470 + . gene_id "ERV316A3_16q21e"; transcript_id "ERV316A3_16q21e"; locus "ERV316A3_16q21e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2435"; repClass "LTR"; repEnd "5030"; repFamily "ERVL"; repLeft "-196"; repStart "3982"; chr16 rmsk exon 60153798 60154175 932 + . gene_id "ERV316A3_16q21e"; transcript_id "ERV316A3_16q21e"; locus "ERV316A3_16q21e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2435"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-12"; repStart "57"; ### ERV316A3_16q21f ### chr16 rmsk gene 60457778 60461226 . - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2436"; model_cov "2668"; model_pct "51.1"; chr16 rmsk exon 60457778 60457863 324 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "4194"; repFamily "ERVL"; repLeft "4110"; repStart "-1032"; chr16 rmsk exon 60457911 60458377 1621 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "4047"; repFamily "ERVL"; repLeft "3560"; repStart "-1179"; chr16 rmsk exon 60458771 60459155 2506 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "3571"; repFamily "ERVL"; repLeft "3179"; repStart "-1655"; chr16 rmsk exon 60459445 60459958 2506 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "3178"; repFamily "ERVL"; repLeft "2667"; repStart "-2048"; chr16 rmsk exon 60459969 60460129 326 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "2002"; repFamily "ERVL"; repLeft "1843"; repStart "-3224"; chr16 rmsk exon 60460247 60461226 1388 - . gene_id "ERV316A3_16q21f"; transcript_id "ERV316A3_16q21f"; locus "ERV316A3_16q21f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2436"; repClass "LTR"; repEnd "1392"; repFamily "ERVL"; repLeft "357"; repStart "-3834"; ### HERVL_16q21 ### chr16 rmsk gene 60846981 60853639 . + . gene_id "HERVL_16q21"; transcript_id "HERVL_16q21"; locus "HERVL_16q21"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1137"; model_cov "5651"; model_pct "99.9"; chr16 rmsk exon 60846981 60847416 2821 + . gene_id "HERVL_16q21"; transcript_id "HERVL_16q21"; locus "HERVL_16q21"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1137"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "-35"; repStart "-101"; chr16 rmsk exon 60847514 60849876 41362 + . gene_id "HERVL_16q21"; transcript_id "HERVL_16q21"; locus "HERVL_16q21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1137"; repClass "LTR"; repEnd "2385"; repFamily "ERVL"; repLeft "-3269"; repStart "2"; chr16 rmsk exon 60849944 60853181 41362 + . gene_id "HERVL_16q21"; transcript_id "HERVL_16q21"; locus "HERVL_16q21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1137"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2386"; chr16 rmsk exon 60853182 60853639 3130 + . gene_id "HERVL_16q21"; transcript_id "HERVL_16q21"; locus "HERVL_16q21"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1137"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_16q21g ### chr16 rmsk gene 61122624 61124508 . - . gene_id "ERV316A3_16q21g"; transcript_id "ERV316A3_16q21g"; locus "ERV316A3_16q21g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2438"; model_cov "1020"; model_pct "19.5"; chr16 rmsk exon 61122624 61123073 304 - . gene_id "ERV316A3_16q21g"; transcript_id "ERV316A3_16q21g"; locus "ERV316A3_16q21g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2438"; repClass "LTR"; repEnd "1807"; repFamily "ERVL"; repLeft "1342"; repStart "-3419"; chr16 rmsk exon 61123102 61123179 268 - . gene_id "ERV316A3_16q21g"; transcript_id "ERV316A3_16q21g"; locus "ERV316A3_16q21g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2438"; repClass "LTR"; repEnd "1045"; repFamily "ERVL"; repLeft "968"; repStart "-4181"; chr16 rmsk exon 61123292 61123769 460 - . gene_id "ERV316A3_16q21g"; transcript_id "ERV316A3_16q21g"; locus "ERV316A3_16q21g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2438"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "317"; repStart "-4431"; chr16 rmsk exon 61124104 61124508 872 - . gene_id "ERV316A3_16q21g"; transcript_id "ERV316A3_16q21g"; locus "ERV316A3_16q21g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2438"; repClass "LTR"; repEnd "427"; repFamily "ERVL"; repLeft "25"; repStart "-11"; ### ERV316A3_16q21h ### chr16 rmsk gene 61142873 61146736 . - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2439"; model_cov "2193"; model_pct "42.0"; chr16 rmsk exon 61142873 61143277 987 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "43"; repStart "-6"; chr16 rmsk exon 61143327 61143808 2235 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4708"; repStart "0"; chr16 rmsk exon 61144268 61145394 2235 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "3576"; repStart "-519"; chr16 rmsk exon 61145435 61145788 511 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "3137"; repFamily "ERVL"; repLeft "2781"; repStart "-2089"; chr16 rmsk exon 61145852 61146037 659 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "3073"; repFamily "ERVL"; repLeft "2885"; repStart "-2153"; chr16 rmsk exon 61146491 61146736 640 - . gene_id "ERV316A3_16q21h"; transcript_id "ERV316A3_16q21h"; locus "ERV316A3_16q21h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2439"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "205"; repStart "0"; ### ERVLE_16q21a ### chr16 rmsk gene 61409714 61410731 . + . gene_id "ERVLE_16q21a"; transcript_id "ERVLE_16q21a"; locus "ERVLE_16q21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3219"; model_cov "959"; model_pct "16.9"; chr16 rmsk exon 61409714 61410123 1073 + . gene_id "ERVLE_16q21a"; transcript_id "ERVLE_16q21a"; locus "ERVLE_16q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3219"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "-5062"; repStart "185"; chr16 rmsk exon 61410163 61410362 428 + . gene_id "ERVLE_16q21a"; transcript_id "ERVLE_16q21a"; locus "ERVLE_16q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3219"; repClass "LTR"; repEnd "934"; repFamily "ERVL"; repLeft "-4733"; repStart "735"; chr16 rmsk exon 61410396 61410731 1050 + . gene_id "ERVLE_16q21a"; transcript_id "ERVLE_16q21a"; locus "ERVLE_16q21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3219"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "-3239"; repStart "2088"; ### ERV316A3_16q21i ### chr16 rmsk gene 62758823 62761060 . + . gene_id "ERV316A3_16q21i"; transcript_id "ERV316A3_16q21i"; locus "ERV316A3_16q21i"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2441"; model_cov "1129"; model_pct "21.6"; chr16 rmsk exon 62758823 62759260 779 + . gene_id "ERV316A3_16q21i"; transcript_id "ERV316A3_16q21i"; locus "ERV316A3_16q21i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2441"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr16 rmsk exon 62759663 62759796 407 + . gene_id "ERV316A3_16q21i"; transcript_id "ERV316A3_16q21i"; locus "ERV316A3_16q21i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2441"; repClass "LTR"; repEnd "3833"; repFamily "ERVL"; repLeft "-1393"; repStart "3696"; chr16 rmsk exon 62759835 62760788 1850 + . gene_id "ERV316A3_16q21i"; transcript_id "ERV316A3_16q21i"; locus "ERV316A3_16q21i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2441"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "-49"; repStart "4185"; chr16 rmsk exon 62760793 62761060 912 + . gene_id "ERV316A3_16q21i"; transcript_id "ERV316A3_16q21i"; locus "ERV316A3_16q21i"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2441"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-54"; repStart "122"; ### ERVLE_16q21b ### chr16 rmsk gene 62823065 62825230 . - . gene_id "ERVLE_16q21b"; transcript_id "ERVLE_16q21b"; locus "ERVLE_16q21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3220"; model_cov "1420"; model_pct "25.1"; chr16 rmsk exon 62823065 62823268 393 - . gene_id "ERVLE_16q21b"; transcript_id "ERVLE_16q21b"; locus "ERVLE_16q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3220"; repClass "LTR"; repEnd "4969"; repFamily "ERVL"; repLeft "4715"; repStart "-698"; chr16 rmsk exon 62824058 62824256 413 - . gene_id "ERVLE_16q21b"; transcript_id "ERVLE_16q21b"; locus "ERVLE_16q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3220"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "4119"; repStart "-1345"; chr16 rmsk exon 62824303 62825230 981 - . gene_id "ERVLE_16q21b"; transcript_id "ERVLE_16q21b"; locus "ERVLE_16q21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3220"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "2994"; repStart "-1710"; ### HERVH_16q21c ### chr16 rmsk gene 62979240 62985208 . - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1095"; model_cov "4906"; model_pct "63.6"; chr16 rmsk exon 62979240 62979627 1745 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "2"; repStart "-39"; chr16 rmsk exon 62979628 62979971 1923 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr16 rmsk exon 62979972 62980188 1224 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 62980190 62980837 3915 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr16 rmsk exon 62980840 62981342 3211 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 62981333 62981480 859 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 62981475 62985101 15697 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr16 rmsk exon 62985102 62985208 884 - . gene_id "HERVH_16q21c"; transcript_id "HERVH_16q21c"; locus "HERVH_16q21c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1095"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "366"; repStart "0"; ### ERV316A3_16q21j ### chr16 rmsk gene 63028699 63033107 . + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2442"; model_cov "3536"; model_pct "67.7"; chr16 rmsk exon 63028699 63029930 1615 + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2442"; repClass "LTR"; repEnd "2655"; repFamily "ERVL"; repLeft "-2571"; repStart "1431"; chr16 rmsk exon 63029964 63030289 725 + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2442"; repClass "LTR"; repEnd "3082"; repFamily "ERVL"; repLeft "-2144"; repStart "2751"; chr16 rmsk exon 63030303 63030917 3482 + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2442"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1341"; repStart "3236"; chr16 rmsk exon 63031382 63032691 3482 + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2442"; repClass "LTR"; repEnd "5218"; repFamily "ERVL"; repLeft "-8"; repStart "3886"; chr16 rmsk exon 63032692 63033107 1226 + . gene_id "ERV316A3_16q21j"; transcript_id "ERV316A3_16q21j"; locus "ERV316A3_16q21j"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2442"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "-5"; repStart "4"; ### ERVL_16q21c ### chr16 rmsk gene 64186821 64187242 . + . gene_id "ERVL_16q21c"; transcript_id "ERVL_16q21c"; locus "ERVL_16q21c"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0404"; model_cov "628"; model_pct "10.9"; chr16 rmsk exon 64186821 64187242 2316 + . gene_id "ERVL_16q21c"; transcript_id "ERVL_16q21c"; locus "ERVL_16q21c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0404"; repClass "LTR"; repEnd "3515"; repFamily "ERVL"; repLeft "-2242"; repStart "2887"; ### ERV316A3_16q21k ### chr16 rmsk gene 64835948 64837132 . - . gene_id "ERV316A3_16q21k"; transcript_id "ERV316A3_16q21k"; locus "ERV316A3_16q21k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2445"; model_cov "811"; model_pct "15.5"; chr16 rmsk exon 64835948 64836334 862 - . gene_id "ERV316A3_16q21k"; transcript_id "ERV316A3_16q21k"; locus "ERV316A3_16q21k"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2445"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "2"; repStart "-18"; chr16 rmsk exon 64836377 64837132 2510 - . gene_id "ERV316A3_16q21k"; transcript_id "ERV316A3_16q21k"; locus "ERV316A3_16q21k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2445"; repClass "LTR"; repEnd "5164"; repFamily "ERVL"; repLeft "4353"; repStart "-62"; ### ERV316A3_16q21l ### chr16 rmsk gene 64837220 64841722 . - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; category "unknown"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2446"; model_cov "3922"; model_pct "75.0"; chr16 rmsk exon 64837220 64837455 2510 - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2446"; repClass "LTR"; repEnd "5164"; repFamily "ERVL"; repLeft "4910"; repStart "-62"; chr16 rmsk exon 64837573 64838002 2510 - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2446"; repClass "LTR"; repEnd "4097"; repFamily "ERVL"; repLeft "3705"; repStart "-1129"; chr16 rmsk exon 64838167 64838887 1473 - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2446"; repClass "LTR"; repEnd "3378"; repFamily "ERVL"; repLeft "2676"; repStart "-1848"; chr16 rmsk exon 64838897 64839017 524 - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2446"; repClass "LTR"; repEnd "291"; repFamily "ERVL"; repLeft "168"; repStart "-131"; chr16 rmsk exon 64839065 64841722 4858 - . gene_id "ERV316A3_16q21l"; transcript_id "ERV316A3_16q21l"; locus "ERV316A3_16q21l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2446"; repClass "LTR"; repEnd "2603"; repFamily "ERVL"; repLeft "29"; repStart "-2623"; ### MER41_16q21 ### chr16 rmsk gene 65016643 65022129 . - . gene_id "MER41_16q21"; transcript_id "MER41_16q21"; locus "MER41_16q21"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0471"; model_cov "4426"; model_pct "74.4"; chr16 rmsk exon 65016643 65017290 3559 - . gene_id "MER41_16q21"; transcript_id "MER41_16q21"; locus "MER41_16q21"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0471"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chr16 rmsk exon 65017291 65020338 23906 - . gene_id "MER41_16q21"; transcript_id "MER41_16q21"; locus "MER41_16q21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0471"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "2958"; repStart "0"; chr16 rmsk exon 65020630 65022129 23906 - . gene_id "MER41_16q21"; transcript_id "MER41_16q21"; locus "MER41_16q21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0471"; repClass "LTR"; repEnd "2957"; repFamily "ERV1"; repLeft "1519"; repStart "-2989"; ### HERVH_16q21d ### chr16 rmsk gene 65229805 65235349 . - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1096"; model_cov "4552"; model_pct "59.0"; chr16 rmsk exon 65229805 65230256 3665 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 65230257 65230852 2582 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 65230857 65231518 4228 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr16 rmsk exon 65231521 65232016 3324 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr16 rmsk exon 65232016 65232173 995 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3134"; repStart "-4423"; chr16 rmsk exon 65232145 65234891 18488 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "141"; repStart "-4718"; chr16 rmsk exon 65234900 65235349 3674 - . gene_id "HERVH_16q21d"; transcript_id "HERVH_16q21d"; locus "HERVH_16q21d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1096"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_16q21e ### chr16 rmsk gene 65275256 65279034 . - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1097"; model_cov "3288"; model_pct "42.6"; chr16 rmsk exon 65275256 65275689 2865 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr16 rmsk exon 65275690 65276068 2633 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 65276067 65276284 1409 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 65276289 65276947 4086 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chr16 rmsk exon 65276950 65277449 3341 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 65277440 65277587 930 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 65277582 65278958 9247 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1618"; repStart "-4726"; chr16 rmsk exon 65278959 65279034 592 - . gene_id "HERVH_16q21e"; transcript_id "HERVH_16q21e"; locus "HERVH_16q21e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1097"; repClass "LTR"; repEnd "76"; repFamily "ERV1"; repLeft "1"; repStart "-374"; ### ERVLE_16q21c ### chr16 rmsk gene 65591533 65592569 . + . gene_id "ERVLE_16q21c"; transcript_id "ERVLE_16q21c"; locus "ERVLE_16q21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3221"; model_cov "1160"; model_pct "20.5"; chr16 rmsk exon 65591533 65592569 1544 + . gene_id "ERVLE_16q21c"; transcript_id "ERVLE_16q21c"; locus "ERVLE_16q21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3221"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "-389"; repStart "4118"; ### ERVLB4_16q21b ### chr16 rmsk gene 66197005 66197729 . + . gene_id "ERVLB4_16q21b"; transcript_id "ERVLB4_16q21b"; locus "ERVLB4_16q21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1565"; model_cov "670"; model_pct "11.7"; chr16 rmsk exon 66197005 66197191 1144 + . gene_id "ERVLB4_16q21b"; transcript_id "ERVLB4_16q21b"; locus "ERVLB4_16q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1565"; repClass "LTR"; repEnd "1459"; repFamily "ERVL"; repLeft "-4255"; repStart "1272"; chr16 rmsk exon 66197327 66197729 1664 + . gene_id "ERVLB4_16q21b"; transcript_id "ERVLB4_16q21b"; locus "ERVLB4_16q21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1565"; repClass "LTR"; repEnd "1899"; repFamily "ERVL"; repLeft "-3815"; repStart "1416"; ### MER101_16q22.1a ### chr16 rmsk gene 68938694 68942048 . - . gene_id "MER101_16q22.1a"; transcript_id "MER101_16q22.1a"; locus "MER101_16q22.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0362"; model_cov "2133"; model_pct "32.1"; chr16 rmsk exon 68938694 68938921 272 - . gene_id "MER101_16q22.1a"; transcript_id "MER101_16q22.1a"; locus "MER101_16q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0362"; repClass "LTR"; repEnd "6523"; repFamily "ERV1"; repLeft "6284"; repStart "-116"; chr16 rmsk exon 68940355 68941463 2303 - . gene_id "MER101_16q22.1a"; transcript_id "MER101_16q22.1a"; locus "MER101_16q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0362"; repClass "LTR"; repEnd "4602"; repFamily "ERV1"; repLeft "2857"; repStart "-2037"; chr16 rmsk exon 68941759 68941839 1747 - . gene_id "MER101_16q22.1a"; transcript_id "MER101_16q22.1a"; locus "MER101_16q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0362"; repClass "LTR"; repEnd "3509"; repFamily "ERV1"; repLeft "3439"; repStart "-3130"; chr16 rmsk exon 68941970 68942048 1747 - . gene_id "MER101_16q22.1a"; transcript_id "MER101_16q22.1a"; locus "MER101_16q22.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0362"; repClass "LTR"; repEnd "3438"; repFamily "ERV1"; repLeft "3359"; repStart "-3201"; ### MER41_16q22.1 ### chr16 rmsk gene 68997155 69000586 . - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0472"; model_cov "2137"; model_pct "35.9"; chr16 rmsk exon 68997155 68997797 3820 - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0472"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "1"; repStart "-36"; chr16 rmsk exon 68997798 68998449 9685 - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0472"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5280"; repStart "0"; chr16 rmsk exon 68998746 68998899 9685 - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0472"; repClass "LTR"; repEnd "5279"; repFamily "ERV1"; repLeft "5142"; repStart "-667"; chr16 rmsk exon 68999183 69000000 9685 - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0472"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "4379"; repStart "-805"; chr16 rmsk exon 69000001 69000586 3264 - . gene_id "MER41_16q22.1"; transcript_id "MER41_16q22.1"; locus "MER41_16q22.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0472"; repClass "LTR"; repEnd "4375"; repFamily "ERV1"; repLeft "3803"; repStart "-1571"; ### MER101_16q22.1b ### chr16 rmsk gene 69998246 69998825 . + . gene_id "MER101_16q22.1b"; transcript_id "MER101_16q22.1b"; locus "MER101_16q22.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0364"; model_cov "1095"; model_pct "16.5"; chr16 rmsk exon 69998246 69998308 361 + . gene_id "MER101_16q22.1b"; transcript_id "MER101_16q22.1b"; locus "MER101_16q22.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0364"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16 rmsk exon 69998300 69998825 1629 + . gene_id "MER101_16q22.1b"; transcript_id "MER101_16q22.1b"; locus "MER101_16q22.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0364"; repClass "LTR"; repEnd "4639"; repFamily "ERV1"; repLeft "-2000"; repStart "3606"; ### HERVH_16q22.1 ### chr16 rmsk gene 70616524 70626119 . - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; category "tandem*"; intModel "HERVH-int"; locid "HERVH-int_1099"; model_cov "4916"; model_pct "63.7"; chr16 rmsk exon 70616524 70616915 1818 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "411"; repFamily "ERV1"; repLeft "-20"; repStart "-39"; chr16 rmsk exon 70616916 70617291 2381 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 70617291 70617506 1381 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 70617508 70618171 4323 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr16 rmsk exon 70618174 70618678 3269 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 70618678 70618806 724 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 70618806 70621608 15277 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr16 rmsk exon 70621611 70622062 3335 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr16 rmsk exon 70622063 70622490 2943 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "4914"; repFamily "ERV1"; repLeft "4488"; repStart "-2799"; chr16 rmsk exon 70622493 70622983 3241 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chr16 rmsk exon 70622983 70623128 756 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr16 rmsk exon 70623128 70626012 15720 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr16 rmsk exon 70626013 70626119 854 - . gene_id "HERVH_16q22.1"; transcript_id "HERVH_16q22.1"; locus "HERVH_16q22.1"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1099"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "366"; repStart "0"; ### LTR23_16q22.2 ### chr16 rmsk gene 72031363 72032616 . - . gene_id "LTR23_16q22.2"; transcript_id "LTR23_16q22.2"; locus "LTR23_16q22.2"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0062"; model_cov "733"; model_pct "14.3"; chr16 rmsk exon 72031363 72031395 743 - . gene_id "LTR23_16q22.2"; transcript_id "LTR23_16q22.2"; locus "LTR23_16q22.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0062"; repClass "LTR"; repEnd "2023"; repFamily "ERV1"; repLeft "1993"; repStart "-3100"; chr16 rmsk exon 72031722 72032185 1335 - . gene_id "LTR23_16q22.2"; transcript_id "LTR23_16q22.2"; locus "LTR23_16q22.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0062"; repClass "LTR"; repEnd "1606"; repFamily "ERV1"; repLeft "1209"; repStart "-3517"; chr16 rmsk exon 72032407 72032551 443 - . gene_id "LTR23_16q22.2"; transcript_id "LTR23_16q22.2"; locus "LTR23_16q22.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0062"; repClass "LTR"; repEnd "39"; repFamily "ERV1"; repLeft "-196"; repStart "-5084"; chr16 rmsk exon 72032550 72032616 295 - . gene_id "LTR23_16q22.2"; transcript_id "LTR23_16q22.2"; locus "LTR23_16q22.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0062"; repClass "LTR"; repEnd "-140"; repFamily "ERV1"; repLeft "-211"; repStart "-5263"; ### HERVI_16q22.2 ### chr16 rmsk gene 72064269 72073376 . + . gene_id "HERVI_16q22.2"; transcript_id "HERVI_16q22.2"; locus "HERVI_16q22.2"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0033"; model_cov "7783"; model_pct "100.0"; chr16 rmsk exon 72064269 72064778 3209 + . gene_id "HERVI_16q22.2"; transcript_id "HERVI_16q22.2"; locus "HERVI_16q22.2"; repName "LTR10B"; geneRegion "ltr"; locid "HERVI-int_0033"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr16 rmsk exon 72064779 72072014 68969 + . gene_id "HERVI_16q22.2"; transcript_id "HERVI_16q22.2"; locus "HERVI_16q22.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0033"; repClass "LTR"; repEnd "7232"; repFamily "ERV1"; repLeft "-553"; repStart "1"; chr16 rmsk exon 72072308 72072861 68969 + . gene_id "HERVI_16q22.2"; transcript_id "HERVI_16q22.2"; locus "HERVI_16q22.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0033"; repClass "LTR"; repEnd "7785"; repFamily "ERV1"; repLeft "0"; repStart "7233"; chr16 rmsk exon 72072862 72073376 3410 + . gene_id "HERVI_16q22.2"; transcript_id "HERVI_16q22.2"; locus "HERVI_16q22.2"; repName "LTR10B"; geneRegion "ltr"; locid "HERVI-int_0033"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_16q22.2 ### chr16 rmsk gene 72750696 72752598 . - . gene_id "ERV316A3_16q22.2"; transcript_id "ERV316A3_16q22.2"; locus "ERV316A3_16q22.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2448"; model_cov "1458"; model_pct "27.9"; chr16 rmsk exon 72750696 72751141 1309 - . gene_id "ERV316A3_16q22.2"; transcript_id "ERV316A3_16q22.2"; locus "ERV316A3_16q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2448"; repClass "LTR"; repEnd "4255"; repFamily "ERVL"; repLeft "3810"; repStart "-971"; chr16 rmsk exon 72751287 72751967 2474 - . gene_id "ERV316A3_16q22.2"; transcript_id "ERV316A3_16q22.2"; locus "ERV316A3_16q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2448"; repClass "LTR"; repEnd "3804"; repFamily "ERVL"; repLeft "3109"; repStart "-1422"; chr16 rmsk exon 72752269 72752598 2474 - . gene_id "ERV316A3_16q22.2"; transcript_id "ERV316A3_16q22.2"; locus "ERV316A3_16q22.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2448"; repClass "LTR"; repEnd "3108"; repFamily "ERVL"; repLeft "2790"; repStart "-2118"; ### ERVLE_16q22.3a ### chr16 rmsk gene 73511542 73513833 . + . gene_id "ERVLE_16q22.3a"; transcript_id "ERVLE_16q22.3a"; locus "ERVLE_16q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3227"; model_cov "1570"; model_pct "27.7"; chr16 rmsk exon 73511542 73511919 729 + . gene_id "ERVLE_16q22.3a"; transcript_id "ERVLE_16q22.3a"; locus "ERVLE_16q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3227"; repClass "LTR"; repEnd "1324"; repFamily "ERVL"; repLeft "-4343"; repStart "939"; chr16 rmsk exon 73512631 73513123 910 + . gene_id "ERVLE_16q22.3a"; transcript_id "ERVLE_16q22.3a"; locus "ERVLE_16q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3227"; repClass "LTR"; repEnd "1505"; repFamily "ERVL"; repLeft "-4162"; repStart "1003"; chr16 rmsk exon 73513193 73513833 1307 + . gene_id "ERVLE_16q22.3a"; transcript_id "ERVLE_16q22.3a"; locus "ERVLE_16q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3227"; repClass "LTR"; repEnd "3939"; repFamily "ERVL"; repLeft "-1728"; repStart "3256"; ### ERVLE_16q22.3b ### chr16 rmsk gene 74012921 74017551 . - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3228"; model_cov "2822"; model_pct "49.8"; chr16 rmsk exon 74012921 74013248 305 - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3228"; repClass "LTR"; repEnd "5465"; repFamily "ERVL"; repLeft "5113"; repStart "-202"; chr16 rmsk exon 74014105 74014329 469 - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3228"; repClass "LTR"; repEnd "4748"; repFamily "ERVL"; repLeft "4523"; repStart "-919"; chr16 rmsk exon 74014495 74014637 280 - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3228"; repClass "LTR"; repEnd "4533"; repFamily "ERVL"; repLeft "4387"; repStart "-1134"; chr16 rmsk exon 74015329 74017223 2556 - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3228"; repClass "LTR"; repEnd "3412"; repFamily "ERVL"; repLeft "1404"; repStart "-2255"; chr16 rmsk exon 74017458 74017551 317 - . gene_id "ERVLE_16q22.3b"; transcript_id "ERVLE_16q22.3b"; locus "ERVLE_16q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3228"; repClass "LTR"; repEnd "1067"; repFamily "ERVL"; repLeft "976"; repStart "-4600"; ### ERV316A3_16q23.1a ### chr16 rmsk gene 74611569 74615756 . - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2449"; model_cov "1360"; model_pct "26.0"; chr16 rmsk exon 74611569 74612014 1461 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "4042"; repFamily "ERVL"; repLeft "3517"; repStart "-1184"; chr16 rmsk exon 74612010 74612089 268 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "2575"; repFamily "ERVL"; repLeft "2493"; repStart "-2651"; chr16 rmsk exon 74613579 74614077 1928 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "2114"; repFamily "ERVL"; repLeft "1637"; repStart "-3112"; chr16 rmsk exon 74614368 74614556 1928 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "1636"; repFamily "ERVL"; repLeft "1459"; repStart "-3590"; chr16 rmsk exon 74614856 74614969 1928 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "1458"; repFamily "ERVL"; repLeft "1359"; repStart "-3768"; chr16 rmsk exon 74615008 74615240 1275 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "243"; repStart "0"; chr16 rmsk exon 74615539 74615756 1275 - . gene_id "ERV316A3_16q23.1a"; transcript_id "ERV316A3_16q23.1a"; locus "ERV316A3_16q23.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2449"; repClass "LTR"; repEnd "242"; repFamily "ERVL"; repLeft "1"; repStart "-220"; ### MER4_16q23.1a ### chr16 rmsk gene 74806330 74808407 . + . gene_id "MER4_16q23.1a"; transcript_id "MER4_16q23.1a"; locus "MER4_16q23.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0714"; model_cov "729"; model_pct "11.0"; chr16 rmsk exon 74806330 74806776 3246 + . gene_id "MER4_16q23.1a"; transcript_id "MER4_16q23.1a"; locus "MER4_16q23.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0714"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr16 rmsk exon 74806781 74806908 885 + . gene_id "MER4_16q23.1a"; transcript_id "MER4_16q23.1a"; locus "MER4_16q23.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0714"; repClass "LTR"; repEnd "153"; repFamily "ERV1"; repLeft "-6445"; repStart "1"; chr16 rmsk exon 74807874 74808346 2007 + . gene_id "MER4_16q23.1a"; transcript_id "MER4_16q23.1a"; locus "MER4_16q23.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0714"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "168"; chr16 rmsk exon 74808335 74808407 493 + . gene_id "MER4_16q23.1a"; transcript_id "MER4_16q23.1a"; locus "MER4_16q23.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0714"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "-5786"; repStart "753"; ### MER4_16q23.1b ### chr16 rmsk gene 74808424 74811704 . + . gene_id "MER4_16q23.1b"; transcript_id "MER4_16q23.1b"; locus "MER4_16q23.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0715"; model_cov "2867"; model_pct "43.5"; chr16 rmsk exon 74808424 74808495 308 + . gene_id "MER4_16q23.1b"; transcript_id "MER4_16q23.1b"; locus "MER4_16q23.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0715"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "-5845"; repStart "687"; chr16 rmsk exon 74808517 74808559 301 + . gene_id "MER4_16q23.1b"; transcript_id "MER4_16q23.1b"; locus "MER4_16q23.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0715"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3639"; chr16 rmsk exon 74808559 74811250 17707 + . gene_id "MER4_16q23.1b"; transcript_id "MER4_16q23.1b"; locus "MER4_16q23.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0715"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chr16 rmsk exon 74811257 74811704 3379 + . gene_id "MER4_16q23.1b"; transcript_id "MER4_16q23.1b"; locus "MER4_16q23.1b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0715"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_16q23.1d ### chr16 rmsk gene 75118776 75129829 . + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; category "insert*"; intModel "MER4-int"; locid "MER4-int_0717"; model_cov "4213"; model_pct "63.9"; chr16 rmsk exon 75118776 75119198 2780 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0717"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr16 rmsk exon 75119200 75119791 2884 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr16 rmsk exon 75119791 75119851 422 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "-5786"; repStart "741"; chr16 rmsk exon 75119874 75119945 306 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "754"; repFamily "ERV1"; repLeft "-5844"; repStart "688"; chr16 rmsk exon 75120009 75120591 7455 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "1553"; repFamily "ERV1"; repLeft "-5045"; repStart "993"; chr16 rmsk exon 75120925 75121158 7455 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "1764"; repFamily "ERV1"; repLeft "-4834"; repStart "1554"; chr16 rmsk exon 75121424 75122025 7455 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "2429"; repFamily "ERV1"; repLeft "-4169"; repStart "1765"; chr16 rmsk exon 75122602 75122669 446 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2428"; chr16 rmsk exon 75122905 75123069 706 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "2920"; repFamily "ERV1"; repLeft "-3678"; repStart "2737"; chr16 rmsk exon 75123778 75123810 1027 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "2947"; repFamily "ERV1"; repLeft "-3651"; repStart "2926"; chr16 rmsk exon 75124120 75124167 1027 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "2991"; repFamily "ERV1"; repLeft "-3607"; repStart "2948"; chr16 rmsk exon 75124459 75124501 1027 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "3032"; repFamily "ERV1"; repLeft "-3566"; repStart "2992"; chr16 rmsk exon 75124803 75124975 1027 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "3215"; repFamily "ERV1"; repLeft "-3383"; repStart "3033"; chr16 rmsk exon 75125622 75125760 1003 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "4578"; repFamily "ERV1"; repLeft "-2020"; repStart "4434"; chr16 rmsk exon 75126071 75126136 1003 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "4633"; repFamily "ERV1"; repLeft "-1965"; repStart "4579"; chr16 rmsk exon 75126704 75127253 11948 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "5109"; repFamily "ERV1"; repLeft "-1489"; repStart "4612"; chr16 rmsk exon 75127621 75128780 11948 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "-285"; repStart "5110"; chr16 rmsk exon 75129090 75129372 11948 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0717"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6314"; chr16 rmsk exon 75129383 75129829 3126 + . gene_id "MER4_16q23.1d"; transcript_id "MER4_16q23.1d"; locus "MER4_16q23.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0717"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR46_16q23.1 ### chr16 rmsk gene 75682529 75684785 . - . gene_id "LTR46_16q23.1"; transcript_id "LTR46_16q23.1"; locus "LTR46_16q23.1"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0017"; model_cov "2246"; model_pct "32.2"; chr16 rmsk exon 75682529 75682655 353 - . gene_id "LTR46_16q23.1"; transcript_id "LTR46_16q23.1"; locus "LTR46_16q23.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0017"; repClass "LTR"; repEnd "118"; repFamily "ERV1"; repLeft "1"; repStart "-342"; chr16 rmsk exon 75682656 75682964 2155 - . gene_id "LTR46_16q23.1"; transcript_id "LTR46_16q23.1"; locus "LTR46_16q23.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0017"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6678"; repStart "0"; chr16 rmsk exon 75683219 75683997 2222 - . gene_id "LTR46_16q23.1"; transcript_id "LTR46_16q23.1"; locus "LTR46_16q23.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0017"; repClass "LTR"; repEnd "6677"; repFamily "ERV1"; repLeft "5224"; repStart "-308"; chr16 rmsk exon 75684303 75684785 1811 - . gene_id "LTR46_16q23.1"; transcript_id "LTR46_16q23.1"; locus "LTR46_16q23.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0017"; repClass "LTR"; repEnd "6044"; repFamily "ERV1"; repLeft "5558"; repStart "-941"; ### HERVFRD_16q23.1 ### chr16 rmsk gene 75707966 75712370 . + . gene_id "HERVFRD_16q23.1"; transcript_id "HERVFRD_16q23.1"; locus "HERVFRD_16q23.1"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0160"; model_cov "2471"; model_pct "34.3"; chr16 rmsk exon 75707966 75708256 1322 + . gene_id "HERVFRD_16q23.1"; transcript_id "HERVFRD_16q23.1"; locus "HERVFRD_16q23.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0160"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "-5413"; repStart "1526"; chr16 rmsk exon 75709857 75709919 441 + . gene_id "HERVFRD_16q23.1"; transcript_id "HERVFRD_16q23.1"; locus "HERVFRD_16q23.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0160"; repClass "LTR"; repEnd "3657"; repFamily "ERV1"; repLeft "-3548"; repStart "3595"; chr16 rmsk exon 75710390 75711832 6537 + . gene_id "HERVFRD_16q23.1"; transcript_id "HERVFRD_16q23.1"; locus "HERVFRD_16q23.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0160"; repClass "LTR"; repEnd "7198"; repFamily "ERV1"; repLeft "-7"; repStart "5055"; chr16 rmsk exon 75711834 75712370 3110 + . gene_id "HERVFRD_16q23.1"; transcript_id "HERVFRD_16q23.1"; locus "HERVFRD_16q23.1"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0160"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "-140"; repStart "3"; ### LTR57_16q23.1 ### chr16 rmsk gene 75740951 75742238 . + . gene_id "LTR57_16q23.1"; transcript_id "LTR57_16q23.1"; locus "LTR57_16q23.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0154"; model_cov "878"; model_pct "16.4"; chr16 rmsk exon 75740951 75741627 3703 + . gene_id "LTR57_16q23.1"; transcript_id "LTR57_16q23.1"; locus "LTR57_16q23.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0154"; repClass "LTR"; repEnd "1409"; repFamily "ERVL"; repLeft "-3934"; repStart "714"; chr16 rmsk exon 75742050 75742238 3703 + . gene_id "LTR57_16q23.1"; transcript_id "LTR57_16q23.1"; locus "LTR57_16q23.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0154"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "-3750"; repStart "1410"; ### MER4_16q23.1c ### chr16 rmsk gene 75742322 75743897 . + . gene_id "MER4_16q23.1c"; transcript_id "MER4_16q23.1c"; locus "MER4_16q23.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0718"; model_cov "1363"; model_pct "20.7"; chr16 rmsk exon 75742322 75743168 1915 + . gene_id "MER4_16q23.1c"; transcript_id "MER4_16q23.1c"; locus "MER4_16q23.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0718"; repClass "LTR"; repEnd "3730"; repFamily "ERV1"; repLeft "-2868"; repStart "2798"; chr16 rmsk exon 75743168 75743368 1616 + . gene_id "MER4_16q23.1c"; transcript_id "MER4_16q23.1c"; locus "MER4_16q23.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0718"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "-3362"; repStart "3034"; chr16 rmsk exon 75743669 75743897 1616 + . gene_id "MER4_16q23.1c"; transcript_id "MER4_16q23.1c"; locus "MER4_16q23.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0718"; repClass "LTR"; repEnd "3466"; repFamily "ERV1"; repLeft "-3132"; repStart "3237"; ### HERV4_16q23.1a ### chr16 rmsk gene 76034774 76035695 . - . gene_id "HERV4_16q23.1a"; transcript_id "HERV4_16q23.1a"; locus "HERV4_16q23.1a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0120"; model_cov "1092"; model_pct "16.7"; chr16 rmsk exon 76034774 76035695 4442 - . gene_id "HERV4_16q23.1a"; transcript_id "HERV4_16q23.1a"; locus "HERV4_16q23.1a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0120"; repClass "LTR"; repEnd "-600"; repFamily "ERV1"; repLeft "-1692"; repStart "-7139"; ### HERV4_16q23.1b ### chr16 rmsk gene 76035719 76037318 . - . gene_id "HERV4_16q23.1b"; transcript_id "HERV4_16q23.1b"; locus "HERV4_16q23.1b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0121"; model_cov "739"; model_pct "11.3"; chr16 rmsk exon 76035719 76036076 1112 - . gene_id "HERV4_16q23.1b"; transcript_id "HERV4_16q23.1b"; locus "HERV4_16q23.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0121"; repClass "LTR"; repEnd "4124"; repFamily "ERV1"; repLeft "3910"; repStart "-2415"; chr16 rmsk exon 76036185 76036760 2802 - . gene_id "HERV4_16q23.1b"; transcript_id "HERV4_16q23.1b"; locus "HERV4_16q23.1b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0121"; repClass "LTR"; repEnd "-751"; repFamily "ERV1"; repLeft "-1276"; repStart "-7290"; chr16 rmsk exon 76036761 76037318 1858 - . gene_id "HERV4_16q23.1b"; transcript_id "HERV4_16q23.1b"; locus "HERV4_16q23.1b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0121"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "17"; repStart "0"; ### ERVLB4_16q23.1 ### chr16 rmsk gene 76059019 76060408 . + . gene_id "ERVLB4_16q23.1"; transcript_id "ERVLB4_16q23.1"; locus "ERVLB4_16q23.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1567"; model_cov "639"; model_pct "11.2"; chr16 rmsk exon 76059019 76059173 358 + . gene_id "ERVLB4_16q23.1"; transcript_id "ERVLB4_16q23.1"; locus "ERVLB4_16q23.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1567"; repClass "LTR"; repEnd "2184"; repFamily "ERVL"; repLeft "-3530"; repStart "2028"; chr16 rmsk exon 76059942 76060408 1031 + . gene_id "ERVLB4_16q23.1"; transcript_id "ERVLB4_16q23.1"; locus "ERVLB4_16q23.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1567"; repClass "LTR"; repEnd "2433"; repFamily "ERVL"; repLeft "-3281"; repStart "1950"; ### HERVL_16q23.1 ### chr16 rmsk gene 76433980 76437377 . - . gene_id "HERVL_16q23.1"; transcript_id "HERVL_16q23.1"; locus "HERVL_16q23.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1139"; model_cov "2690"; model_pct "47.6"; chr16 rmsk exon 76433980 76434013 245 - . gene_id "HERVL_16q23.1"; transcript_id "HERVL_16q23.1"; locus "HERVL_16q23.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1139"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "420"; repStart "0"; chr16 rmsk exon 76434234 76436927 20981 - . gene_id "HERVL_16q23.1"; transcript_id "HERVL_16q23.1"; locus "HERVL_16q23.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1139"; repClass "LTR"; repEnd "2691"; repFamily "ERVL"; repLeft "1"; repStart "-2963"; chr16 rmsk exon 76436996 76437377 2881 - . gene_id "HERVL_16q23.1"; transcript_id "HERVL_16q23.1"; locus "HERVL_16q23.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1139"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "1"; repStart "-59"; ### ERV316A3_16q23.1b ### chr16 rmsk gene 76561884 76565124 . - . gene_id "ERV316A3_16q23.1b"; transcript_id "ERV316A3_16q23.1b"; locus "ERV316A3_16q23.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2451"; model_cov "2244"; model_pct "42.9"; chr16 rmsk exon 76561884 76562284 1213 - . gene_id "ERV316A3_16q23.1b"; transcript_id "ERV316A3_16q23.1b"; locus "ERV316A3_16q23.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2451"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "8"; repStart "-5"; chr16 rmsk exon 76562782 76564017 2692 - . gene_id "ERV316A3_16q23.1b"; transcript_id "ERV316A3_16q23.1b"; locus "ERV316A3_16q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2451"; repClass "LTR"; repEnd "4237"; repFamily "ERVL"; repLeft "3008"; repStart "-989"; chr16 rmsk exon 76564149 76565124 1983 - . gene_id "ERV316A3_16q23.1b"; transcript_id "ERV316A3_16q23.1b"; locus "ERV316A3_16q23.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2451"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "1946"; repStart "-2265"; ### ERVLE_16q23.1 ### chr16 rmsk gene 76957722 76958772 . + . gene_id "ERVLE_16q23.1"; transcript_id "ERVLE_16q23.1"; locus "ERVLE_16q23.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3230"; model_cov "685"; model_pct "12.1"; chr16 rmsk exon 76957722 76957984 1186 + . gene_id "ERVLE_16q23.1"; transcript_id "ERVLE_16q23.1"; locus "ERVLE_16q23.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3230"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "-1442"; repStart "3960"; chr16 rmsk exon 76958346 76958772 1186 + . gene_id "ERVLE_16q23.1"; transcript_id "ERVLE_16q23.1"; locus "ERVLE_16q23.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3230"; repClass "LTR"; repEnd "4646"; repFamily "ERVL"; repLeft "-1021"; repStart "4226"; ### HERVE_16q23.1 ### chr16 rmsk gene 78058573 78060638 . - . gene_id "HERVE_16q23.1"; transcript_id "HERVE_16q23.1"; locus "HERVE_16q23.1"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0149"; model_cov "1573"; model_pct "20.1"; chr16 rmsk exon 78058573 78060150 12781 - . gene_id "HERVE_16q23.1"; transcript_id "HERVE_16q23.1"; locus "HERVE_16q23.1"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0149"; repClass "LTR"; repEnd "1574"; repFamily "ERV1"; repLeft "1"; repStart "-6239"; chr16 rmsk exon 78060151 78060638 3782 - . gene_id "HERVE_16q23.1"; transcript_id "HERVE_16q23.1"; locus "HERVE_16q23.1"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0149"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### ERVLE_16q23.2 ### chr16 rmsk gene 81369168 81370331 . + . gene_id "ERVLE_16q23.2"; transcript_id "ERVLE_16q23.2"; locus "ERVLE_16q23.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3231"; model_cov "709"; model_pct "12.5"; chr16 rmsk exon 81369168 81369455 1121 + . gene_id "ERVLE_16q23.2"; transcript_id "ERVLE_16q23.2"; locus "ERVLE_16q23.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3231"; repClass "LTR"; repEnd "2344"; repFamily "ERVL"; repLeft "-3323"; repStart "2053"; chr16 rmsk exon 81369893 81370331 969 + . gene_id "ERVLE_16q23.2"; transcript_id "ERVLE_16q23.2"; locus "ERVLE_16q23.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3231"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "-2903"; repStart "2346"; ### ERVLE_16q23.3 ### chr16 rmsk gene 82146789 82147578 . - . gene_id "ERVLE_16q23.3"; transcript_id "ERVLE_16q23.3"; locus "ERVLE_16q23.3"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3232"; model_cov "693"; model_pct "12.2"; chr16 rmsk exon 82146789 82147234 1043 - . gene_id "ERVLE_16q23.3"; transcript_id "ERVLE_16q23.3"; locus "ERVLE_16q23.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3232"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "4792"; repStart "-399"; chr16 rmsk exon 82147373 82147578 647 - . gene_id "ERVLE_16q23.3"; transcript_id "ERVLE_16q23.3"; locus "ERVLE_16q23.3"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3232"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "4375"; repStart "-1075"; ### MER4_16q24.1 ### chr16 rmsk gene 84489697 84495590 . + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0719"; model_cov "3893"; model_pct "59.0"; chr16 rmsk exon 84489697 84489734 259 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "144"; repFamily "ERV1"; repLeft "-6454"; repStart "107"; chr16 rmsk exon 84489790 84490443 1340 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "937"; repFamily "ERV1"; repLeft "-5661"; repStart "200"; chr16 rmsk exon 84490480 84490654 1340 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "938"; chr16 rmsk exon 84490696 84491038 1170 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "2460"; repFamily "ERV1"; repLeft "-4138"; repStart "2142"; chr16 rmsk exon 84491873 84492564 12208 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "4669"; repFamily "ERV1"; repLeft "-1929"; repStart "3958"; chr16 rmsk exon 84492882 84494041 12208 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "5841"; repFamily "ERV1"; repLeft "-757"; repStart "4670"; chr16 rmsk exon 84494075 84494838 12208 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0719"; repClass "LTR"; repEnd "6588"; repFamily "ERV1"; repLeft "-10"; repStart "5842"; chr16 rmsk exon 84494852 84494992 2429 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0719"; repClass "LTR"; repEnd "151"; repFamily "ERV1"; repLeft "-314"; repStart "10"; chr16 rmsk exon 84495293 84495590 2429 + . gene_id "MER4_16q24.1"; transcript_id "MER4_16q24.1"; locus "MER4_16q24.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0719"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "-1"; repStart "152"; ### ERV316A3_16q24.1 ### chr16 rmsk gene 84676157 84677543 . + . gene_id "ERV316A3_16q24.1"; transcript_id "ERV316A3_16q24.1"; locus "ERV316A3_16q24.1"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2452"; model_cov "1112"; model_pct "21.3"; chr16 rmsk exon 84676157 84676804 2182 + . gene_id "ERV316A3_16q24.1"; transcript_id "ERV316A3_16q24.1"; locus "ERV316A3_16q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2452"; repClass "LTR"; repEnd "4306"; repFamily "ERVL"; repLeft "-920"; repStart "3619"; chr16 rmsk exon 84676976 84677105 427 + . gene_id "ERV316A3_16q24.1"; transcript_id "ERV316A3_16q24.1"; locus "ERV316A3_16q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2452"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-793"; repStart "4299"; chr16 rmsk exon 84677257 84677543 501 + . gene_id "ERV316A3_16q24.1"; transcript_id "ERV316A3_16q24.1"; locus "ERV316A3_16q24.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2452"; repClass "LTR"; repEnd "4451"; repFamily "ERVL"; repLeft "-775"; repStart "4160"; ### HERVL_16q24.1 ### chr16 rmsk gene 84855240 84861709 . - . gene_id "HERVL_16q24.1"; transcript_id "HERVL_16q24.1"; locus "HERVL_16q24.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1142"; model_cov "5653"; model_pct "100.0"; chr16 rmsk exon 84855240 84855695 3074 - . gene_id "HERVL_16q24.1"; transcript_id "HERVL_16q24.1"; locus "HERVL_16q24.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1142"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr16 rmsk exon 84855696 84861284 42532 - . gene_id "HERVL_16q24.1"; transcript_id "HERVL_16q24.1"; locus "HERVL_16q24.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1142"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr16 rmsk exon 84861285 84861709 3126 - . gene_id "HERVL_16q24.1"; transcript_id "HERVL_16q24.1"; locus "HERVL_16q24.1"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1142"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVFH19_16q24.1 ### chr16 rmsk gene 85886945 85888002 . + . gene_id "HERVFH19_16q24.1"; transcript_id "HERVFH19_16q24.1"; locus "HERVFH19_16q24.1"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0042"; model_cov "1055"; model_pct "13.7"; chr16 rmsk exon 85886945 85888002 7267 + . gene_id "HERVFH19_16q24.1"; transcript_id "HERVFH19_16q24.1"; locus "HERVFH19_16q24.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0042"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4664"; repStart "2000"; ### HERVH_16q24.1a ### chr16 rmsk gene 86278095 86281279 . + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1102"; model_cov "2329"; model_pct "30.2"; chr16 rmsk exon 86278095 86278535 3713 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr16 rmsk exon 86278536 86279150 1306 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "-7115"; repStart "1"; chr16 rmsk exon 86279126 86279955 5208 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2180"; chr16 rmsk exon 86279935 86280085 924 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr16 rmsk exon 86280076 86280237 972 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr16 rmsk exon 86280230 86280840 4517 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr16 rmsk exon 86280841 86281279 3716 + . gene_id "HERVH_16q24.1a"; transcript_id "HERVH_16q24.1a"; locus "HERVH_16q24.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1102"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_16q24.1b ### chr16 rmsk gene 86742019 86747655 . - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1103"; model_cov "4907"; model_pct "63.6"; chr16 rmsk exon 86742019 86742466 3148 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr16 rmsk exon 86742467 86742841 2415 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr16 rmsk exon 86742840 86743056 1412 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr16 rmsk exon 86743058 86743719 4246 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr16 rmsk exon 86743722 86744226 3347 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr16 rmsk exon 86744217 86744366 917 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3141"; repStart "-4423"; chr16 rmsk exon 86744362 86747202 15564 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr16 rmsk exon 86747205 86747655 3457 - . gene_id "HERVH_16q24.1b"; transcript_id "HERVH_16q24.1b"; locus "HERVH_16q24.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1103"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL74_16q24.3 ### chr16 rmsk gene 89231483 89232777 . + . gene_id "HERVL74_16q24.3"; transcript_id "HERVL74_16q24.3"; locus "HERVL74_16q24.3"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0102"; model_cov "610"; model_pct "10.7"; chr16 rmsk exon 89231483 89231837 671 + . gene_id "HERVL74_16q24.3"; transcript_id "HERVL74_16q24.3"; locus "HERVL74_16q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0102"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "-588"; repStart "4692"; chr16 rmsk exon 89231967 89232035 487 + . gene_id "HERVL74_16q24.3"; transcript_id "HERVL74_16q24.3"; locus "HERVL74_16q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0102"; repClass "LTR"; repEnd "5459"; repFamily "ERVL"; repLeft "-226"; repStart "5393"; chr16 rmsk exon 89232440 89232579 487 + . gene_id "HERVL74_16q24.3"; transcript_id "HERVL74_16q24.3"; locus "HERVL74_16q24.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0102"; repClass "LTR"; repEnd "5599"; repFamily "ERVL"; repLeft "-86"; repStart "5460"; chr16 rmsk exon 89232616 89232777 492 + . gene_id "HERVL74_16q24.3"; transcript_id "HERVL74_16q24.3"; locus "HERVL74_16q24.3"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0102"; repClass "LTR"; repEnd "208"; repFamily "ERVL"; repLeft "-414"; repStart "42"; ### MER4_16q24.3 ### chr16 rmsk gene 89672252 89684187 . + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0720"; model_cov "4156"; model_pct "63.0"; chr16 rmsk exon 89672252 89672492 1046 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0720"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "174"; chr16 rmsk exon 89672501 89673437 2982 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "1055"; repFamily "ERV1"; repLeft "-5543"; repStart "6"; chr16 rmsk exon 89673731 89673796 2982 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "1116"; repFamily "ERV1"; repLeft "-5482"; repStart "1056"; chr16 rmsk exon 89673844 89674000 587 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "1523"; repFamily "ERV1"; repLeft "-5075"; repStart "1359"; chr16 rmsk exon 89675151 89675175 1003 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "-4806"; repStart "1768"; chr16 rmsk exon 89675764 89675941 1003 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "1968"; repFamily "ERV1"; repLeft "-4630"; repStart "1793"; chr16 rmsk exon 89676428 89676610 1485 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "2156"; repFamily "ERV1"; repLeft "-4442"; repStart "1958"; chr16 rmsk exon 89676917 89677226 1485 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "2157"; chr16 rmsk exon 89678540 89678622 2847 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "4100"; repFamily "ERV1"; repLeft "-2498"; repStart "4020"; chr16 rmsk exon 89679232 89679539 3400 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "4452"; repFamily "ERV1"; repLeft "-2146"; repStart "4101"; chr16 rmsk exon 89679846 89679902 3400 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "4738"; repFamily "ERV1"; repLeft "-1860"; repStart "4676"; chr16 rmsk exon 89680511 89680778 3400 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "5009"; repFamily "ERV1"; repLeft "-1589"; repStart "4739"; chr16 rmsk exon 89681395 89681734 3400 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "5347"; repFamily "ERV1"; repLeft "-1251"; repStart "5010"; chr16 rmsk exon 89682033 89682446 3400 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "5443"; repFamily "ERV1"; repLeft "-1155"; repStart "4807"; chr16 rmsk exon 89683460 89683677 1116 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "5914"; repFamily "ERV1"; repLeft "-684"; repStart "5695"; chr16 rmsk exon 89683981 89684187 1028 + . gene_id "MER4_16q24.3"; transcript_id "MER4_16q24.3"; locus "MER4_16q24.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0720"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-175"; repStart "6220"; ### PRIMA41_16q24.3 ### chr16 rmsk gene 90090709 90093890 . + . gene_id "PRIMA41_16q24.3"; transcript_id "PRIMA41_16q24.3"; locus "PRIMA41_16q24.3"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0128"; model_cov "1989"; model_pct "25.6"; chr16 rmsk exon 90090709 90090895 840 + . gene_id "PRIMA41_16q24.3"; transcript_id "PRIMA41_16q24.3"; locus "PRIMA41_16q24.3"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0128"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "0"; repStart "369"; chr16 rmsk exon 90091311 90091650 6018 + . gene_id "PRIMA41_16q24.3"; transcript_id "PRIMA41_16q24.3"; locus "PRIMA41_16q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0128"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "4173"; chr16 rmsk exon 90092306 90093890 6018 + . gene_id "PRIMA41_16q24.3"; transcript_id "PRIMA41_16q24.3"; locus "PRIMA41_16q24.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0128"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "4519"; ### ERVLB4_17p13.3a ### chr17 rmsk gene 986091 987370 . - . gene_id "ERVLB4_17p13.3a"; transcript_id "ERVLB4_17p13.3a"; locus "ERVLB4_17p13.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1571"; model_cov "1179"; model_pct "20.6"; chr17 rmsk exon 986091 987209 6610 - . gene_id "ERVLB4_17p13.3a"; transcript_id "ERVLB4_17p13.3a"; locus "ERVLB4_17p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1571"; repClass "LTR"; repEnd "5392"; repFamily "ERVL"; repLeft "4253"; repStart "-322"; chr17 rmsk exon 987330 987370 258 - . gene_id "ERVLB4_17p13.3a"; transcript_id "ERVLB4_17p13.3a"; locus "ERVLB4_17p13.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1571"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "4253"; repStart "-1421"; ### ERVLB4_17p13.3b ### chr17 rmsk gene 987594 988954 . - . gene_id "ERVLB4_17p13.3b"; transcript_id "ERVLB4_17p13.3b"; locus "ERVLB4_17p13.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1573"; model_cov "1276"; model_pct "22.3"; chr17 rmsk exon 987594 988864 6712 - . gene_id "ERVLB4_17p13.3b"; transcript_id "ERVLB4_17p13.3b"; locus "ERVLB4_17p13.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1573"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "3017"; repStart "-1421"; chr17 rmsk exon 988869 988954 308 - . gene_id "ERVLB4_17p13.3b"; transcript_id "ERVLB4_17p13.3b"; locus "ERVLB4_17p13.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1573"; repClass "LTR"; repEnd "80"; repFamily "ERVL"; repLeft "1"; repStart "-476"; ### HERVL_17p13.2a ### chr17 rmsk gene 3425603 3427174 . - . gene_id "HERVL_17p13.2a"; transcript_id "HERVL_17p13.2a"; locus "HERVL_17p13.2a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1143"; model_cov "1586"; model_pct "28.1"; chr17 rmsk exon 3425603 3427174 11413 - . gene_id "HERVL_17p13.2a"; transcript_id "HERVL_17p13.2a"; locus "HERVL_17p13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1143"; repClass "LTR"; repEnd "2326"; repFamily "ERVL"; repLeft "740"; repStart "-3328"; ### ERVLE_17p13.2 ### chr17 rmsk gene 3438518 3439640 . - . gene_id "ERVLE_17p13.2"; transcript_id "ERVLE_17p13.2"; locus "ERVLE_17p13.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3238"; model_cov "575"; model_pct "10.1"; chr17 rmsk exon 3438518 3438595 274 - . gene_id "ERVLE_17p13.2"; transcript_id "ERVLE_17p13.2"; locus "ERVLE_17p13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3238"; repClass "LTR"; repEnd "5270"; repFamily "ERVL"; repLeft "5190"; repStart "-397"; chr17 rmsk exon 3438617 3438899 736 - . gene_id "ERVLE_17p13.2"; transcript_id "ERVLE_17p13.2"; locus "ERVLE_17p13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3238"; repClass "LTR"; repEnd "5135"; repFamily "ERVL"; repLeft "4837"; repStart "-532"; chr17 rmsk exon 3439444 3439640 585 - . gene_id "ERVLE_17p13.2"; transcript_id "ERVLE_17p13.2"; locus "ERVLE_17p13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3238"; repClass "LTR"; repEnd "4816"; repFamily "ERVL"; repLeft "4619"; repStart "-851"; ### HERVL_17p13.2b ### chr17 rmsk gene 4118054 4120551 . - . gene_id "HERVL_17p13.2b"; transcript_id "HERVL_17p13.2b"; locus "HERVL_17p13.2b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1144"; model_cov "2065"; model_pct "36.5"; chr17 rmsk exon 4118054 4119530 10463 - . gene_id "HERVL_17p13.2b"; transcript_id "HERVL_17p13.2b"; locus "HERVL_17p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1144"; repClass "LTR"; repEnd "3620"; repFamily "ERVL"; repLeft "2125"; repStart "-2034"; chr17 rmsk exon 4119533 4120074 3529 - . gene_id "HERVL_17p13.2b"; transcript_id "HERVL_17p13.2b"; locus "HERVL_17p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1144"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "26"; repStart "-5082"; chr17 rmsk exon 4120373 4120405 3529 - . gene_id "HERVL_17p13.2b"; transcript_id "HERVL_17p13.2b"; locus "HERVL_17p13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1144"; repClass "LTR"; repEnd "25"; repFamily "ERVL"; repLeft "1"; repStart "-5629"; chr17 rmsk exon 4120406 4120551 910 - . gene_id "HERVL_17p13.2b"; transcript_id "HERVL_17p13.2b"; locus "HERVL_17p13.2b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1144"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "308"; repStart "0"; ### MER101_17p13.2 ### chr17 rmsk gene 5831630 5834628 . + . gene_id "MER101_17p13.2"; transcript_id "MER101_17p13.2"; locus "MER101_17p13.2"; category "internal"; intModel "MER101-int"; locid "MER101-int_0368"; model_cov "3764"; model_pct "56.7"; chr17 rmsk exon 5831630 5831746 545 + . gene_id "MER101_17p13.2"; transcript_id "MER101_17p13.2"; locus "MER101_17p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0368"; repClass "LTR"; repEnd "-410"; repFamily "ERV1"; repLeft "-7049"; repStart "-530"; chr17 rmsk exon 5831726 5833517 4386 + . gene_id "MER101_17p13.2"; transcript_id "MER101_17p13.2"; locus "MER101_17p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0368"; repClass "LTR"; repEnd "4237"; repFamily "ERV1"; repLeft "-2402"; repStart "1625"; chr17 rmsk exon 5833548 5833942 4386 + . gene_id "MER101_17p13.2"; transcript_id "MER101_17p13.2"; locus "MER101_17p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0368"; repClass "LTR"; repEnd "4816"; repFamily "ERV1"; repLeft "-1823"; repStart "4238"; chr17 rmsk exon 5834233 5834628 2234 + . gene_id "MER101_17p13.2"; transcript_id "MER101_17p13.2"; locus "MER101_17p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0368"; repClass "LTR"; repEnd "5271"; repFamily "ERV1"; repLeft "-1368"; repStart "4817"; ### ERVLB4_17p13.2 ### chr17 rmsk gene 5936121 5937947 . + . gene_id "ERVLB4_17p13.2"; transcript_id "ERVLB4_17p13.2"; locus "ERVLB4_17p13.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1575"; model_cov "620"; model_pct "10.9"; chr17 rmsk exon 5936121 5936205 255 + . gene_id "ERVLB4_17p13.2"; transcript_id "ERVLB4_17p13.2"; locus "ERVLB4_17p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1575"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "-2248"; repStart "3382"; chr17 rmsk exon 5937059 5937241 733 + . gene_id "ERVLB4_17p13.2"; transcript_id "ERVLB4_17p13.2"; locus "ERVLB4_17p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1575"; repClass "LTR"; repEnd "4437"; repFamily "ERVL"; repLeft "-1277"; repStart "4257"; chr17 rmsk exon 5937526 5937798 733 + . gene_id "ERVLB4_17p13.2"; transcript_id "ERVLB4_17p13.2"; locus "ERVLB4_17p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1575"; repClass "LTR"; repEnd "4707"; repFamily "ERVL"; repLeft "-1007"; repStart "4438"; chr17 rmsk exon 5937861 5937947 378 + . gene_id "ERVLB4_17p13.2"; transcript_id "ERVLB4_17p13.2"; locus "ERVLB4_17p13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1575"; repClass "LTR"; repEnd "4938"; repFamily "ERVL"; repLeft "-776"; repStart "4851"; ### HERVH_17p13.1 ### chr17 rmsk gene 6732965 6737452 . - . gene_id "HERVH_17p13.1"; transcript_id "HERVH_17p13.1"; locus "HERVH_17p13.1"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1104"; model_cov "3957"; model_pct "51.3"; chr17 rmsk exon 6732965 6733969 5410 - . gene_id "HERVH_17p13.1"; transcript_id "HERVH_17p13.1"; locus "HERVH_17p13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1104"; repClass "LTR"; repEnd "4094"; repFamily "ERV1"; repLeft "3140"; repStart "-3619"; chr17 rmsk exon 6733949 6736499 9028 - . gene_id "HERVH_17p13.1"; transcript_id "HERVH_17p13.1"; locus "HERVH_17p13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1104"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "450"; repStart "-4718"; chr17 rmsk exon 6736554 6737019 2840 - . gene_id "HERVH_17p13.1"; transcript_id "HERVH_17p13.1"; locus "HERVH_17p13.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1104"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr17 rmsk exon 6737020 6737452 3290 - . gene_id "HERVH_17p13.1"; transcript_id "HERVH_17p13.1"; locus "HERVH_17p13.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1104"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_17p13.1 ### chr17 rmsk gene 6875146 6881530 . - . gene_id "HML3_17p13.1"; transcript_id "HML3_17p13.1"; locus "HML3_17p13.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0203"; model_cov "5394"; model_pct "89.6"; chr17 rmsk exon 6875146 6875661 4627 - . gene_id "HML3_17p13.1"; transcript_id "HML3_17p13.1"; locus "HML3_17p13.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0203"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 6875662 6876877 9903 - . gene_id "HML3_17p13.1"; transcript_id "HML3_17p13.1"; locus "HML3_17p13.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0203"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4804"; repStart "0"; chr17 rmsk exon 6876861 6881020 34901 - . gene_id "HML3_17p13.1"; transcript_id "HML3_17p13.1"; locus "HML3_17p13.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0203"; repClass "LTR"; repEnd "4178"; repFamily "ERVK"; repLeft "1"; repStart "-1843"; chr17 rmsk exon 6881021 6881530 4631 - . gene_id "HML3_17p13.1"; transcript_id "HML3_17p13.1"; locus "HML3_17p13.1"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0203"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV4_17p13.1 ### chr17 rmsk gene 6936343 6940666 . - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0122"; model_cov "2951"; model_pct "45.1"; chr17 rmsk exon 6936343 6936546 1172 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "420"; repStart "0"; chr17 rmsk exon 6936544 6936738 806 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "224"; repFamily "ERV1"; repLeft "1"; repStart "-410"; chr17 rmsk exon 6936743 6937634 13714 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "6536"; repFamily "ERV1"; repLeft "5632"; repStart "-3"; chr17 rmsk exon 6938205 6939279 13714 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "5630"; repFamily "ERV1"; repLeft "4601"; repStart "-909"; chr17 rmsk exon 6939290 6940013 5184 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1206"; repStart "-4581"; chr17 rmsk exon 6940009 6940272 1870 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "267"; repFamily "ERV1"; repLeft "1"; repStart "-6272"; chr17 rmsk exon 6940274 6940666 966 - . gene_id "HERV4_17p13.1"; transcript_id "HERV4_17p13.1"; locus "HERV4_17p13.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0122"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_17p13.1 ### chr17 rmsk gene 7148081 7150211 . + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3242"; model_cov "1115"; model_pct "19.7"; chr17 rmsk exon 7148081 7148186 373 + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3242"; repClass "LTR"; repEnd "1087"; repFamily "ERVL"; repLeft "-4580"; repStart "983"; chr17 rmsk exon 7148619 7149062 926 + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3242"; repClass "LTR"; repEnd "4607"; repFamily "ERVL"; repLeft "-1060"; repStart "4115"; chr17 rmsk exon 7149382 7149629 971 + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3242"; repClass "LTR"; repEnd "5023"; repFamily "ERVL"; repLeft "-644"; repStart "4769"; chr17 rmsk exon 7149655 7149799 681 + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3242"; repClass "LTR"; repEnd "5230"; repFamily "ERVL"; repLeft "-437"; repStart "5073"; chr17 rmsk exon 7150104 7150211 681 + . gene_id "ERVLE_17p13.1"; transcript_id "ERVLE_17p13.1"; locus "ERVLE_17p13.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3242"; repClass "LTR"; repEnd "5339"; repFamily "ERVL"; repLeft "-328"; repStart "5231"; ### MER61_17p13.1 ### chr17 rmsk gene 7522858 7529262 . - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0337"; model_cov "3041"; model_pct "58.3"; chr17 rmsk exon 7522858 7523170 1385 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0337"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr17 rmsk exon 7523264 7523481 9153 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "5130"; repFamily "ERV1"; repLeft "4927"; repStart "-87"; chr17 rmsk exon 7524066 7524227 9153 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "4926"; repFamily "ERV1"; repLeft "4744"; repStart "-291"; chr17 rmsk exon 7524539 7524717 9153 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "4743"; repFamily "ERV1"; repLeft "4587"; repStart "-474"; chr17 rmsk exon 7525044 7526003 9153 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "4586"; repFamily "ERV1"; repLeft "3632"; repStart "-631"; chr17 rmsk exon 7526675 7527303 10393 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "3631"; repFamily "ERV1"; repLeft "3012"; repStart "-1586"; chr17 rmsk exon 7527599 7527875 10393 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "3011"; repFamily "ERV1"; repLeft "2738"; repStart "-2206"; chr17 rmsk exon 7528603 7529262 10393 - . gene_id "MER61_17p13.1"; transcript_id "MER61_17p13.1"; locus "MER61_17p13.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0337"; repClass "LTR"; repEnd "2737"; repFamily "ERV1"; repLeft "2083"; repStart "-2480"; ### HML2_17p13.1 ### chr17 rmsk gene 8056337 8063901 . + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0107"; model_cov "6060"; model_pct "80.4"; chr17 rmsk exon 8056337 8056551 407 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "-458"; repStart "279"; chr17 rmsk exon 8057039 8057470 1171 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-7094"; repStart "1"; chr17 rmsk exon 8057909 8058482 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "1551"; repFamily "ERVK"; repLeft "-5985"; repStart "966"; chr17 rmsk exon 8058796 8061901 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "4676"; repFamily "ERVK"; repLeft "-2860"; repStart "1552"; chr17 rmsk exon 8062292 8063901 2161 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "6588"; repFamily "ERVK"; repLeft "-948"; repStart "4678"; ### MER4_17p13.1 ### chr17 rmsk gene 8306804 8308607 . + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0721"; model_cov "660"; model_pct "10.0"; chr17 rmsk exon 8306804 8307083 2746 + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0721"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "-45"; repStart "139"; chr17 rmsk exon 8307335 8307346 2746 + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0721"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "-34"; repStart "428"; chr17 rmsk exon 8307347 8307413 479 + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0721"; repClass "LTR"; repEnd "1546"; repFamily "ERV1"; repLeft "-5052"; repStart "1480"; chr17 rmsk exon 8307731 8308240 3542 + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0721"; repClass "LTR"; repEnd "4489"; repFamily "ERV1"; repLeft "-2109"; repStart "3962"; chr17 rmsk exon 8308533 8308607 3542 + . gene_id "MER4_17p13.1"; transcript_id "MER4_17p13.1"; locus "MER4_17p13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0721"; repClass "LTR"; repEnd "4557"; repFamily "ERV1"; repLeft "-2041"; repStart "4490"; ### HERVL_17p13.1 ### chr17 rmsk gene 9732553 9735186 . - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1145"; model_cov "1014"; model_pct "17.9"; chr17 rmsk exon 9732553 9732657 320 - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1145"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "2566"; repStart "-2987"; chr17 rmsk exon 9733436 9733765 834 - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1145"; repClass "LTR"; repEnd "2619"; repFamily "ERVL"; repLeft "2258"; repStart "-3035"; chr17 rmsk exon 9734352 9734572 478 - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1145"; repClass "LTR"; repEnd "2115"; repFamily "ERVL"; repLeft "1886"; repStart "-3539"; chr17 rmsk exon 9734566 9734806 506 - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1145"; repClass "LTR"; repEnd "1815"; repFamily "ERVL"; repLeft "1576"; repStart "-3839"; chr17 rmsk exon 9735112 9735186 506 - . gene_id "HERVL_17p13.1"; transcript_id "HERVL_17p13.1"; locus "HERVL_17p13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1145"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "1491"; repStart "-4079"; ### MER4B_17p12a ### chr17 rmsk gene 10915227 10918597 . + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0419"; model_cov "2371"; model_pct "35.1"; chr17 rmsk exon 10915227 10916750 7523 + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0419"; repClass "LTR"; repEnd "4662"; repFamily "ERV1"; repLeft "-2096"; repStart "3090"; chr17 rmsk exon 10916768 10917271 2192 + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0419"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "-918"; repStart "5264"; chr17 rmsk exon 10917272 10917397 5245 + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0419"; repClass "LTR"; repEnd "128"; repFamily "ERV1"; repLeft "-638"; repStart "1"; chr17 rmsk exon 10917709 10918348 5245 + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0419"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "129"; chr17 rmsk exon 10918349 10918597 2192 + . gene_id "MER4B_17p12a"; transcript_id "MER4B_17p12a"; locus "MER4B_17p12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0419"; repClass "LTR"; repEnd "6064"; repFamily "ERV1"; repLeft "-694"; repStart "5841"; ### ERV316A3_17p12a ### chr17 rmsk gene 11056805 11066050 . + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2454"; model_cov "4049"; model_pct "77.5"; chr17 rmsk exon 11056805 11057298 1564 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "-4418"; repStart "287"; chr17 rmsk exon 11058014 11059148 1564 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "1904"; repFamily "ERVL"; repLeft "-3322"; repStart "809"; chr17 rmsk exon 11061633 11062073 1144 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "2375"; repFamily "ERVL"; repLeft "-2851"; repStart "1918"; chr17 rmsk exon 11062246 11062613 2632 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "3226"; repFamily "ERVL"; repLeft "-2000"; repStart "2885"; chr17 rmsk exon 11063402 11063531 2632 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "3353"; repFamily "ERVL"; repLeft "-1873"; repStart "3227"; chr17 rmsk exon 11063901 11064886 2632 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "4405"; repFamily "ERVL"; repLeft "-821"; repStart "3354"; chr17 rmsk exon 11064950 11065397 830 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "4691"; repFamily "ERVL"; repLeft "-535"; repStart "4233"; chr17 rmsk exon 11065615 11066050 1002 + . gene_id "ERV316A3_17p12a"; transcript_id "ERV316A3_17p12a"; locus "ERV316A3_17p12a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2454"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "-2"; repStart "3"; ### HERVH_17p12 ### chr17 rmsk gene 11971756 11976947 . + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1105"; model_cov "4076"; model_pct "52.8"; chr17 rmsk exon 11971756 11972189 2731 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 11972190 11975291 16412 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr17 rmsk exon 11975286 11975432 878 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr17 rmsk exon 11975425 11975572 974 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "-4075"; repStart "3492"; chr17 rmsk exon 11975563 11975923 1247 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4744"; chr17 rmsk exon 11975925 11976513 2634 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr17 rmsk exon 11976514 11976947 2713 + . gene_id "HERVH_17p12"; transcript_id "HERVH_17p12"; locus "HERVH_17p12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1105"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_17p12 ### chr17 rmsk gene 13170446 13174179 . + . gene_id "MER61_17p12"; transcript_id "MER61_17p12"; locus "MER61_17p12"; category "internal"; intModel "MER61-int"; locid "MER61-int_0339"; model_cov "4638"; model_pct "88.9"; chr17 rmsk exon 13170446 13172117 3319 + . gene_id "MER61_17p12"; transcript_id "MER61_17p12"; locus "MER61_17p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0339"; repClass "LTR"; repEnd "2444"; repFamily "ERV1"; repLeft "-2773"; repStart "-43"; chr17 rmsk exon 13172102 13174179 11615 + . gene_id "MER61_17p12"; transcript_id "MER61_17p12"; locus "MER61_17p12"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0339"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-11"; repStart "3055"; ### MER4B_17p12b ### chr17 rmsk gene 13921043 13921829 . - . gene_id "MER4B_17p12b"; transcript_id "MER4B_17p12b"; locus "MER4B_17p12b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0420"; model_cov "758"; model_pct "11.2"; chr17 rmsk exon 13921043 13921829 2854 - . gene_id "MER4B_17p12b"; transcript_id "MER4B_17p12b"; locus "MER4B_17p12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0420"; repClass "LTR"; repEnd "6753"; repFamily "ERV1"; repLeft "5995"; repStart "-5"; ### HUERSP2_17p12 ### chr17 rmsk gene 13965319 13968120 . - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0112"; model_cov "1520"; model_pct "49.2"; chr17 rmsk exon 13965319 13965999 3796 - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0112"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 13966000 13966569 2925 - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0112"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2467"; repStart "0"; chr17 rmsk exon 13966569 13967334 3588 - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0112"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "616"; repStart "-1707"; chr17 rmsk exon 13967306 13967449 516 - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0112"; repClass "LTR"; repEnd "136"; repFamily "ERV1"; repLeft "2"; repStart "-2952"; chr17 rmsk exon 13967451 13968120 4036 - . gene_id "HUERSP2_17p12"; transcript_id "HUERSP2_17p12"; locus "HUERSP2_17p12"; repName "LTR1C1"; geneRegion "ltr"; locid "HUERS-P2-int_0112"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_17p12 ### chr17 rmsk gene 13969460 13973707 . + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; category "unknown"; intModel "HERV4_I-int"; locid "HERV4_I-int_0123"; model_cov "2981"; model_pct "45.6"; chr17 rmsk exon 13969460 13969567 568 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "-1006"; repFamily "ERV1"; repLeft "-7545"; repStart "-1129"; chr17 rmsk exon 13970029 13970570 2335 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "621"; repFamily "ERV1"; repLeft "-13"; repStart "-4"; chr17 rmsk exon 13970594 13970861 1504 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "239"; repFamily "ERV1"; repLeft "-6300"; repStart "1"; chr17 rmsk exon 13970916 13972966 13013 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "2298"; repFamily "ERV1"; repLeft "-4241"; repStart "231"; chr17 rmsk exon 13972975 13973153 959 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "-208"; repStart "143"; chr17 rmsk exon 13973158 13973707 4230 + . gene_id "HERV4_17p12"; transcript_id "HERV4_17p12"; locus "HERV4_17p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0123"; repClass "LTR"; repEnd "2855"; repFamily "ERV1"; repLeft "-3684"; repStart "2302"; ### MER4B_17p12c ### chr17 rmsk gene 14522971 14528015 . - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0421"; model_cov "4224"; model_pct "62.5"; chr17 rmsk exon 14522971 14523224 993 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "6071"; repFamily "ERV1"; repLeft "5840"; repStart "-687"; chr17 rmsk exon 14523226 14524438 3541 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "6077"; repFamily "ERV1"; repLeft "4678"; repStart "-681"; chr17 rmsk exon 14524454 14525844 5424 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "4853"; repFamily "ERV1"; repLeft "3401"; repStart "-1905"; chr17 rmsk exon 14526552 14526955 5424 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "3400"; repFamily "ERV1"; repLeft "2988"; repStart "-3358"; chr17 rmsk exon 14526946 14526956 289 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "4098"; repFamily "ERV1"; repLeft "4083"; repStart "-2660"; chr17 rmsk exon 14527247 14527369 321 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "3022"; repFamily "ERV1"; repLeft "2940"; repStart "-3736"; chr17 rmsk exon 14527520 14528015 1271 - . gene_id "MER4B_17p12c"; transcript_id "MER4B_17p12c"; locus "MER4B_17p12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0421"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "2305"; repStart "-3820"; ### ERV316A3_17p12b ### chr17 rmsk gene 14933961 14937464 . - . gene_id "ERV316A3_17p12b"; transcript_id "ERV316A3_17p12b"; locus "ERV316A3_17p12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2455"; model_cov "3187"; model_pct "61.0"; chr17 rmsk exon 14933961 14937044 5427 - . gene_id "ERV316A3_17p12b"; transcript_id "ERV316A3_17p12b"; locus "ERV316A3_17p12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2455"; repClass "LTR"; repEnd "4889"; repFamily "ERVL"; repLeft "1702"; repStart "-337"; chr17 rmsk exon 14937238 14937464 619 - . gene_id "ERV316A3_17p12b"; transcript_id "ERV316A3_17p12b"; locus "ERV316A3_17p12b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2455"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "221"; repStart "-1"; ### MER41_17p11.2a ### chr17 rmsk gene 16275058 16279310 . - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0475"; model_cov "3398"; model_pct "57.1"; chr17 rmsk exon 16275058 16275570 3416 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0475"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "1"; repStart "-124"; chr17 rmsk exon 16275571 16275741 13125 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0475"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5778"; repStart "0"; chr17 rmsk exon 16276041 16276450 13125 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0475"; repClass "LTR"; repEnd "5777"; repFamily "ERV1"; repLeft "5377"; repStart "-169"; chr17 rmsk exon 16276759 16278055 13125 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0475"; repClass "LTR"; repEnd "5376"; repFamily "ERV1"; repLeft "3249"; repStart "-570"; chr17 rmsk exon 16278387 16279073 10364 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0475"; repClass "LTR"; repEnd "4179"; repFamily "ERV1"; repLeft "3563"; repStart "-1767"; chr17 rmsk exon 16279073 16279157 532 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0475"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chr17 rmsk exon 16279158 16279310 1061 - . gene_id "MER41_17p11.2a"; transcript_id "MER41_17p11.2a"; locus "MER41_17p11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0475"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "479"; repStart "0"; ### HUERSP3B_17p11.2 ### chr17 rmsk gene 16539541 16546626 . + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0120"; model_cov "5651"; model_pct "76.2"; chr17 rmsk exon 16539541 16539745 1221 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "452"; chr17 rmsk exon 16539746 16539842 351 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "1"; chr17 rmsk exon 16539846 16539956 442 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "409"; chr17 rmsk exon 16539969 16541729 6911 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-4760"; repStart "747"; chr17 rmsk exon 16542385 16543182 6094 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3076"; chr17 rmsk exon 16543174 16543295 2240 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "4831"; repFamily "ERV1"; repLeft "-2587"; repStart "4713"; chr17 rmsk exon 16543598 16546085 16021 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "-7"; repStart "4832"; chr17 rmsk exon 16546087 16546626 3367 + . gene_id "HUERSP3B_17p11.2"; transcript_id "HUERSP3B_17p11.2"; locus "HUERSP3B_17p11.2"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0120"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-86"; repStart "1"; ### ERV316A3_17p11.2a ### chr17 rmsk gene 16571376 16578211 . + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2456"; model_cov "3697"; model_pct "70.7"; chr17 rmsk exon 16571376 16571806 1244 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr17 rmsk exon 16571819 16571863 353 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "-4959"; repStart "231"; chr17 rmsk exon 16572149 16572235 353 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "-4876"; repStart "268"; chr17 rmsk exon 16572512 16573036 2878 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "982"; repFamily "ERVL"; repLeft "-4244"; repStart "449"; chr17 rmsk exon 16573351 16574191 2878 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "1813"; repFamily "ERVL"; repLeft "-3413"; repStart "983"; chr17 rmsk exon 16574496 16575046 2878 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "2391"; repFamily "ERVL"; repLeft "-2835"; repStart "1814"; chr17 rmsk exon 16575053 16575229 4034 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "2772"; repFamily "ERVL"; repLeft "-2454"; repStart "2583"; chr17 rmsk exon 16575526 16576042 4034 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "3278"; repFamily "ERVL"; repLeft "-1948"; repStart "2773"; chr17 rmsk exon 16576937 16577389 4034 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "-1461"; repStart "3279"; chr17 rmsk exon 16577753 16578211 4034 + . gene_id "ERV316A3_17p11.2a"; transcript_id "ERV316A3_17p11.2a"; locus "ERV316A3_17p11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2456"; repClass "LTR"; repEnd "4225"; repFamily "ERVL"; repLeft "-1001"; repStart "3766"; ### ERV316A3_17p11.2b ### chr17 rmsk gene 16608230 16609351 . - . gene_id "ERV316A3_17p11.2b"; transcript_id "ERV316A3_17p11.2b"; locus "ERV316A3_17p11.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2457"; model_cov "721"; model_pct "13.8"; chr17 rmsk exon 16608230 16608603 1302 - . gene_id "ERV316A3_17p11.2b"; transcript_id "ERV316A3_17p11.2b"; locus "ERV316A3_17p11.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2457"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "19"; repStart "-5"; chr17 rmsk exon 16608624 16609351 1981 - . gene_id "ERV316A3_17p11.2b"; transcript_id "ERV316A3_17p11.2b"; locus "ERV316A3_17p11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2457"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "4503"; repStart "-2"; ### HERVL_17p11.2a ### chr17 rmsk gene 16879608 16880158 . - . gene_id "HERVL_17p11.2a"; transcript_id "HERVL_17p11.2a"; locus "HERVL_17p11.2a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1147"; model_cov "661"; model_pct "11.7"; chr17 rmsk exon 16879608 16880158 585 - . gene_id "HERVL_17p11.2a"; transcript_id "HERVL_17p11.2a"; locus "HERVL_17p11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1147"; repClass "LTR"; repEnd "4521"; repFamily "ERVL"; repLeft "3860"; repStart "-1133"; ### LTR25_17p11.2 ### chr17 rmsk gene 17427713 17430193 . + . gene_id "LTR25_17p11.2"; transcript_id "LTR25_17p11.2"; locus "LTR25_17p11.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0119"; model_cov "3934"; model_pct "54.7"; chr17 rmsk exon 17427713 17427823 2038 + . gene_id "LTR25_17p11.2"; transcript_id "LTR25_17p11.2"; locus "LTR25_17p11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0119"; repClass "LTR"; repEnd "3005"; repFamily "ERV1"; repLeft "-4183"; repStart "2902"; chr17 rmsk exon 17428089 17430193 7970 + . gene_id "LTR25_17p11.2"; transcript_id "LTR25_17p11.2"; locus "LTR25_17p11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0119"; repClass "LTR"; repEnd "5912"; repFamily "ERV1"; repLeft "-1276"; repStart "2081"; ### ERVLE_17p11.2a ### chr17 rmsk gene 17463278 17464740 . - . gene_id "ERVLE_17p11.2a"; transcript_id "ERVLE_17p11.2a"; locus "ERVLE_17p11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3246"; model_cov "1273"; model_pct "22.5"; chr17 rmsk exon 17463278 17463660 1655 - . gene_id "ERVLE_17p11.2a"; transcript_id "ERVLE_17p11.2a"; locus "ERVLE_17p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3246"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "3818"; repStart "-1516"; chr17 rmsk exon 17463845 17464740 1655 - . gene_id "ERVLE_17p11.2a"; transcript_id "ERVLE_17p11.2a"; locus "ERVLE_17p11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3246"; repClass "LTR"; repEnd "3817"; repFamily "ERVL"; repLeft "2877"; repStart "-1850"; ### MER4_17p11.2a ### chr17 rmsk gene 19646555 19647663 . - . gene_id "MER4_17p11.2a"; transcript_id "MER4_17p11.2a"; locus "MER4_17p11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0722"; model_cov "783"; model_pct "11.9"; chr17 rmsk exon 19646555 19646684 397 - . gene_id "MER4_17p11.2a"; transcript_id "MER4_17p11.2a"; locus "MER4_17p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0722"; repClass "LTR"; repEnd "-641"; repFamily "ERV1"; repLeft "-739"; repStart "-7239"; chr17 rmsk exon 19646653 19647241 2548 - . gene_id "MER4_17p11.2a"; transcript_id "MER4_17p11.2a"; locus "MER4_17p11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0722"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr17 rmsk exon 19647245 19647663 2658 - . gene_id "MER4_17p11.2a"; transcript_id "MER4_17p11.2a"; locus "MER4_17p11.2a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0722"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "12"; repStart "0"; ### HERVH_17p11.2 ### chr17 rmsk gene 19888542 19893598 . - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1106"; model_cov "5284"; model_pct "68.5"; chr17 rmsk exon 19888542 19888882 1741 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "416"; repFamily "ERV1"; repLeft "1"; repStart "-48"; chr17 rmsk exon 19888883 19889440 3949 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr17 rmsk exon 19889434 19889687 1441 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chr17 rmsk exon 19889679 19890950 4005 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "3979"; repStart "-1805"; chr17 rmsk exon 19890951 19892983 13061 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "801"; repStart "-4883"; chr17 rmsk exon 19892954 19893479 1840 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "12"; repStart "-7191"; chr17 rmsk exon 19893492 19893598 906 - . gene_id "HERVH_17p11.2"; transcript_id "HERVH_17p11.2"; locus "HERVH_17p11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1106"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### ERVLE_17p11.2b ### chr17 rmsk gene 19985481 19988334 . - . gene_id "ERVLE_17p11.2b"; transcript_id "ERVLE_17p11.2b"; locus "ERVLE_17p11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3247"; model_cov "725"; model_pct "12.8"; chr17 rmsk exon 19985481 19985659 760 - . gene_id "ERVLE_17p11.2b"; transcript_id "ERVLE_17p11.2b"; locus "ERVLE_17p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3247"; repClass "LTR"; repEnd "2801"; repFamily "ERVL"; repLeft "2616"; repStart "-2866"; chr17 rmsk exon 19987221 19987257 425 - . gene_id "ERVLE_17p11.2b"; transcript_id "ERVLE_17p11.2b"; locus "ERVLE_17p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3247"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "1177"; repStart "-4456"; chr17 rmsk exon 19987852 19988334 425 - . gene_id "ERVLE_17p11.2b"; transcript_id "ERVLE_17p11.2b"; locus "ERVLE_17p11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3247"; repClass "LTR"; repEnd "1201"; repFamily "ERVL"; repLeft "695"; repStart "-4466"; ### MER41_17p11.2b ### chr17 rmsk gene 20192871 20195560 . - . gene_id "MER41_17p11.2b"; transcript_id "MER41_17p11.2b"; locus "MER41_17p11.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0476"; model_cov "1852"; model_pct "31.1"; chr17 rmsk exon 20192871 20193416 4417 - . gene_id "MER41_17p11.2b"; transcript_id "MER41_17p11.2b"; locus "MER41_17p11.2b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0476"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 20193417 20194502 11639 - . gene_id "MER41_17p11.2b"; transcript_id "MER41_17p11.2b"; locus "MER41_17p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0476"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4836"; repStart "-2"; chr17 rmsk exon 20194804 20195560 11639 - . gene_id "MER41_17p11.2b"; transcript_id "MER41_17p11.2b"; locus "MER41_17p11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0476"; repClass "LTR"; repEnd "4835"; repFamily "ERV1"; repLeft "4091"; repStart "-1111"; ### MER41_17p11.2c ### chr17 rmsk gene 20863724 20864398 . - . gene_id "MER41_17p11.2c"; transcript_id "MER41_17p11.2c"; locus "MER41_17p11.2c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0477"; model_cov "679"; model_pct "11.4"; chr17 rmsk exon 20863724 20864177 2146 - . gene_id "MER41_17p11.2c"; transcript_id "MER41_17p11.2c"; locus "MER41_17p11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0477"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "2743"; repStart "-2725"; chr17 rmsk exon 20864177 20864398 929 - . gene_id "MER41_17p11.2c"; transcript_id "MER41_17p11.2c"; locus "MER41_17p11.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0477"; repClass "LTR"; repEnd "-134"; repFamily "ERV1"; repLeft "-335"; repStart "-6080"; ### HERVL_17p11.2b ### chr17 rmsk gene 20998063 20998876 . + . gene_id "HERVL_17p11.2b"; transcript_id "HERVL_17p11.2b"; locus "HERVL_17p11.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1148"; model_cov "872"; model_pct "15.4"; chr17 rmsk exon 20998063 20998596 405 + . gene_id "HERVL_17p11.2b"; transcript_id "HERVL_17p11.2b"; locus "HERVL_17p11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1148"; repClass "LTR"; repEnd "4518"; repFamily "ERVL"; repLeft "-1136"; repStart "3860"; chr17 rmsk exon 20998665 20998876 359 + . gene_id "HERVL_17p11.2b"; transcript_id "HERVL_17p11.2b"; locus "HERVL_17p11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1148"; repClass "LTR"; repEnd "4849"; repFamily "ERVL"; repLeft "-805"; repStart "4635"; ### HML3_17p11.2 ### chr17 rmsk gene 21077815 21080559 . - . gene_id "HML3_17p11.2"; transcript_id "HML3_17p11.2"; locus "HML3_17p11.2"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0204"; model_cov "2251"; model_pct "37.4"; chr17 rmsk exon 21077815 21080072 13816 - . gene_id "HML3_17p11.2"; transcript_id "HML3_17p11.2"; locus "HML3_17p11.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0204"; repClass "LTR"; repEnd "2177"; repFamily "ERVK"; repLeft "-74"; repStart "-3844"; chr17 rmsk exon 21080073 21080559 3250 - . gene_id "HML3_17p11.2"; transcript_id "HML3_17p11.2"; locus "HML3_17p11.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0204"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_17p11.2b ### chr17 rmsk gene 21133190 21142900 . - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0723"; model_cov "5271"; model_pct "79.9"; chr17 rmsk exon 21133190 21133619 2809 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0723"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 21133628 21136016 16361 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4085"; repStart "-2"; chr17 rmsk exon 21136318 21136417 16361 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "3987"; repStart "-2514"; chr17 rmsk exon 21138138 21138208 2797 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "3276"; repFamily "ERV1"; repLeft "3216"; repStart "-3322"; chr17 rmsk exon 21138522 21138981 2797 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "3215"; repFamily "ERV1"; repLeft "2737"; repStart "-3383"; chr17 rmsk exon 21139216 21139393 3485 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2326"; repStart "-4103"; chr17 rmsk exon 21139704 21140019 3485 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "2325"; repFamily "ERV1"; repLeft "1962"; repStart "-4273"; chr17 rmsk exon 21140312 21140468 3485 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "1961"; repFamily "ERV1"; repLeft "1798"; repStart "-4637"; chr17 rmsk exon 21140546 21141430 5222 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "986"; repFamily "ERV1"; repLeft "55"; repStart "-5612"; chr17 rmsk exon 21141433 21141953 2470 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0723"; repClass "LTR"; repEnd "-1172"; repFamily "ERV1"; repLeft "-1671"; repStart "-7770"; chr17 rmsk exon 21141955 21142020 2440 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0723"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "411"; repStart "0"; chr17 rmsk exon 21142498 21142900 2440 - . gene_id "MER4_17p11.2b"; transcript_id "MER4_17p11.2b"; locus "MER4_17p11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0723"; repClass "LTR"; repEnd "410"; repFamily "ERV1"; repLeft "1"; repStart "-62"; ### ERVLE_17p11.2c ### chr17 rmsk gene 21238531 21239100 . + . gene_id "ERVLE_17p11.2c"; transcript_id "ERVLE_17p11.2c"; locus "ERVLE_17p11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3249"; model_cov "604"; model_pct "10.7"; chr17 rmsk exon 21238531 21239100 844 + . gene_id "ERVLE_17p11.2c"; transcript_id "ERVLE_17p11.2c"; locus "ERVLE_17p11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3249"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-5058"; repStart "5"; ### MER4B_17p11.2a ### chr17 rmsk gene 21567289 21568857 . - . gene_id "MER4B_17p11.2a"; transcript_id "MER4B_17p11.2a"; locus "MER4B_17p11.2a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0422"; model_cov "1052"; model_pct "15.6"; chr17 rmsk exon 21567289 21567863 3182 - . gene_id "MER4B_17p11.2a"; transcript_id "MER4B_17p11.2a"; locus "MER4B_17p11.2a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0422"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "1"; repStart "-36"; chr17 rmsk exon 21567864 21568857 3776 - . gene_id "MER4B_17p11.2a"; transcript_id "MER4B_17p11.2a"; locus "MER4B_17p11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0422"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5706"; repStart "0"; ### MER4B_17p11.2b ### chr17 rmsk gene 21571410 21572862 . - . gene_id "MER4B_17p11.2b"; transcript_id "MER4B_17p11.2b"; locus "MER4B_17p11.2b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0423"; model_cov "1088"; model_pct "16.1"; chr17 rmsk exon 21571410 21571599 3950 - . gene_id "MER4B_17p11.2b"; transcript_id "MER4B_17p11.2b"; locus "MER4B_17p11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0423"; repClass "LTR"; repEnd "5722"; repFamily "ERV1"; repLeft "5544"; repStart "-1036"; chr17 rmsk exon 21571959 21572503 3950 - . gene_id "MER4B_17p11.2b"; transcript_id "MER4B_17p11.2b"; locus "MER4B_17p11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0423"; repClass "LTR"; repEnd "5543"; repFamily "ERV1"; repLeft "5004"; repStart "-1215"; chr17 rmsk exon 21572494 21572650 882 - . gene_id "MER4B_17p11.2b"; transcript_id "MER4B_17p11.2b"; locus "MER4B_17p11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0423"; repClass "LTR"; repEnd "4481"; repFamily "ERV1"; repLeft "4321"; repStart "-2277"; chr17 rmsk exon 21572657 21572862 942 - . gene_id "MER4B_17p11.2b"; transcript_id "MER4B_17p11.2b"; locus "MER4B_17p11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0423"; repClass "LTR"; repEnd "4184"; repFamily "ERV1"; repLeft "3973"; repStart "-2574"; ### MER4B_17p11.2c ### chr17 rmsk gene 22413145 22414526 . + . gene_id "MER4B_17p11.2c"; transcript_id "MER4B_17p11.2c"; locus "MER4B_17p11.2c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0424"; model_cov "969"; model_pct "14.3"; chr17 rmsk exon 22413145 22413350 860 + . gene_id "MER4B_17p11.2c"; transcript_id "MER4B_17p11.2c"; locus "MER4B_17p11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0424"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "-2572"; repStart "3975"; chr17 rmsk exon 22413355 22413511 837 + . gene_id "MER4B_17p11.2c"; transcript_id "MER4B_17p11.2c"; locus "MER4B_17p11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0424"; repClass "LTR"; repEnd "4481"; repFamily "ERV1"; repLeft "-2277"; repStart "4321"; chr17 rmsk exon 22413502 22414044 2981 + . gene_id "MER4B_17p11.2c"; transcript_id "MER4B_17p11.2c"; locus "MER4B_17p11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0424"; repClass "LTR"; repEnd "5543"; repFamily "ERV1"; repLeft "-1215"; repStart "5004"; chr17 rmsk exon 22414392 22414526 2981 + . gene_id "MER4B_17p11.2c"; transcript_id "MER4B_17p11.2c"; locus "MER4B_17p11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0424"; repClass "LTR"; repEnd "5603"; repFamily "ERV1"; repLeft "-1155"; repStart "5544"; ### MER4B_17p11.2d ### chr17 rmsk gene 22417097 22418670 . + . gene_id "MER4B_17p11.2d"; transcript_id "MER4B_17p11.2d"; locus "MER4B_17p11.2d"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0425"; model_cov "1052"; model_pct "15.6"; chr17 rmsk exon 22417097 22418095 3643 + . gene_id "MER4B_17p11.2d"; transcript_id "MER4B_17p11.2d"; locus "MER4B_17p11.2d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0425"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "5706"; chr17 rmsk exon 22418096 22418670 3048 + . gene_id "MER4B_17p11.2d"; transcript_id "MER4B_17p11.2d"; locus "MER4B_17p11.2d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0425"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "1"; ### MER41_17p11.2d ### chr17 rmsk gene 22565728 22566401 . - . gene_id "MER41_17p11.2d"; transcript_id "MER41_17p11.2d"; locus "MER41_17p11.2d"; category "internal"; intModel "MER41-int"; locid "MER41-int_0479"; model_cov "701"; model_pct "11.8"; chr17 rmsk exon 22565728 22566191 2118 - . gene_id "MER41_17p11.2d"; transcript_id "MER41_17p11.2d"; locus "MER41_17p11.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0479"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "2731"; repStart "-2725"; chr17 rmsk exon 22566182 22566401 876 - . gene_id "MER41_17p11.2d"; transcript_id "MER41_17p11.2d"; locus "MER41_17p11.2d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0479"; repClass "LTR"; repEnd "-124"; repFamily "ERV1"; repLeft "-335"; repStart "-6070"; ### MER41_17q11.1 ### chr17 rmsk gene 27093444 27094138 . + . gene_id "MER41_17q11.1"; transcript_id "MER41_17q11.1"; locus "MER41_17q11.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0480"; model_cov "698"; model_pct "11.7"; chr17 rmsk exon 27093444 27093679 825 + . gene_id "MER41_17q11.1"; transcript_id "MER41_17q11.1"; locus "MER41_17q11.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0480"; repClass "LTR"; repEnd "-134"; repFamily "ERV1"; repLeft "-6080"; repStart "-345"; chr17 rmsk exon 27093679 27094138 2033 + . gene_id "MER41_17q11.1"; transcript_id "MER41_17q11.1"; locus "MER41_17q11.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0480"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "-2716"; repStart "2743"; ### ERVLE_17q11.1 ### chr17 rmsk gene 27115421 27116490 . + . gene_id "ERVLE_17q11.1"; transcript_id "ERVLE_17q11.1"; locus "ERVLE_17q11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3254"; model_cov "988"; model_pct "17.4"; chr17 rmsk exon 27115421 27115582 429 + . gene_id "ERVLE_17q11.1"; transcript_id "ERVLE_17q11.1"; locus "ERVLE_17q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3254"; repClass "LTR"; repEnd "1403"; repFamily "ERVL"; repLeft "-4264"; repStart "1252"; chr17 rmsk exon 27115655 27116490 914 + . gene_id "ERVLE_17q11.1"; transcript_id "ERVLE_17q11.1"; locus "ERVLE_17q11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3254"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "-716"; repStart "4114"; ### ERVL_17q11.1 ### chr17 rmsk gene 27273488 27274075 . + . gene_id "ERVL_17q11.1"; transcript_id "ERVL_17q11.1"; locus "ERVL_17q11.1"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0411"; model_cov "611"; model_pct "10.6"; chr17 rmsk exon 27273488 27274075 3281 + . gene_id "ERVL_17q11.1"; transcript_id "ERVL_17q11.1"; locus "ERVL_17q11.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0411"; repClass "LTR"; repEnd "5077"; repFamily "ERVL"; repLeft "-680"; repStart "4466"; ### HML3_17q11.2a ### chr17 rmsk gene 27684289 27686098 . + . gene_id "HML3_17q11.2a"; transcript_id "HML3_17q11.2a"; locus "HML3_17q11.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0205"; model_cov "1376"; model_pct "22.9"; chr17 rmsk exon 27684289 27684732 2794 + . gene_id "HML3_17q11.2a"; transcript_id "HML3_17q11.2a"; locus "HML3_17q11.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0205"; repClass "LTR"; repEnd "508"; repFamily "ERVK"; repLeft "-4"; repStart "37"; chr17 rmsk exon 27684738 27686098 6183 + . gene_id "HML3_17q11.2a"; transcript_id "HML3_17q11.2a"; locus "HML3_17q11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0205"; repClass "LTR"; repEnd "1305"; repFamily "ERVK"; repLeft "-4716"; repStart "-71"; ### HERVK11_17q11.2 ### chr17 rmsk gene 27686099 27696448 . - . gene_id "HERVK11_17q11.2"; transcript_id "HERVK11_17q11.2"; locus "HERVK11_17q11.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0090"; model_cov "7951"; model_pct "100.0"; chr17 rmsk exon 27686099 27687307 5535 - . gene_id "HERVK11_17q11.2"; transcript_id "HERVK11_17q11.2"; locus "HERVK11_17q11.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0090"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 27687309 27694960 28582 - . gene_id "HERVK11_17q11.2"; transcript_id "HERVK11_17q11.2"; locus "HERVK11_17q11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0090"; repClass "LTR"; repEnd "7952"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr17 rmsk exon 27694961 27695819 4243 - . gene_id "HERVK11_17q11.2"; transcript_id "HERVK11_17q11.2"; locus "HERVK11_17q11.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0090"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "420"; repStart "0"; chr17 rmsk exon 27696215 27696448 1865 - . gene_id "HERVK11_17q11.2"; transcript_id "HERVK11_17q11.2"; locus "HERVK11_17q11.2"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0090"; repClass "LTR"; repEnd "264"; repFamily "ERVK"; repLeft "31"; repStart "-1002"; ### HML3_17q11.2b ### chr17 rmsk gene 27696449 27702611 . + . gene_id "HML3_17q11.2b"; transcript_id "HML3_17q11.2b"; locus "HML3_17q11.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0206"; model_cov "6726"; model_pct "100.0"; chr17 rmsk exon 27696449 27701135 29685 + . gene_id "HML3_17q11.2b"; transcript_id "HML3_17q11.2b"; locus "HML3_17q11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0206"; repClass "LTR"; repEnd "4791"; repFamily "ERVK"; repLeft "-1230"; repStart "-280"; chr17 rmsk exon 27701234 27702152 2404 + . gene_id "HML3_17q11.2b"; transcript_id "HML3_17q11.2b"; locus "HML3_17q11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0206"; repClass "LTR"; repEnd "5924"; repFamily "ERVK"; repLeft "-97"; repStart "4269"; chr17 rmsk exon 27702160 27702611 2796 + . gene_id "HML3_17q11.2b"; transcript_id "HML3_17q11.2b"; locus "HML3_17q11.2b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0206"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "-2"; repStart "33"; ### HERV9_17q11.2a ### chr17 rmsk gene 27711912 27720960 . + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0168"; model_cov "8045"; model_pct "95.4"; chr17 rmsk exon 27711912 27712428 3500 + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0168"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 27712449 27717775 24234 + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0168"; repClass "LTR"; repEnd "5634"; repFamily "ERV1"; repLeft "-2802"; repStart "29"; chr17 rmsk exon 27717766 27718132 18408 + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0168"; repClass "LTR"; repEnd "6359"; repFamily "ERV1"; repLeft "-2077"; repStart "5995"; chr17 rmsk exon 27718378 27720463 18408 + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0168"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6360"; chr17 rmsk exon 27720464 27720960 3493 + . gene_id "HERV9_17q11.2a"; transcript_id "HERV9_17q11.2a"; locus "HERV9_17q11.2a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0168"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVE_17q11.2 ### chr17 rmsk gene 28230519 28239339 . - . gene_id "HERVE_17q11.2"; transcript_id "HERVE_17q11.2"; locus "HERVE_17q11.2"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0150"; model_cov "7811"; model_pct "100.0"; chr17 rmsk exon 28230519 28231014 3973 - . gene_id "HERVE_17q11.2"; transcript_id "HERVE_17q11.2"; locus "HERVE_17q11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0150"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 28231015 28238844 61881 - . gene_id "HERVE_17q11.2"; transcript_id "HERVE_17q11.2"; locus "HERVE_17q11.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0150"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr17 rmsk exon 28238845 28239339 4049 - . gene_id "HERVE_17q11.2"; transcript_id "HERVE_17q11.2"; locus "HERVE_17q11.2"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0150"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_17q11.2a ### chr17 rmsk gene 28263602 28264797 . - . gene_id "MER4_17q11.2a"; transcript_id "MER4_17q11.2a"; locus "MER4_17q11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0724"; model_cov "765"; model_pct "11.6"; chr17 rmsk exon 28263602 28264062 2967 - . gene_id "MER4_17q11.2a"; transcript_id "MER4_17q11.2a"; locus "MER4_17q11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0724"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 28264071 28264797 3737 - . gene_id "MER4_17q11.2a"; transcript_id "MER4_17q11.2a"; locus "MER4_17q11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0724"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5831"; repStart "-2"; ### MER61_17q11.2 ### chr17 rmsk gene 29433490 29437050 . - . gene_id "MER61_17q11.2"; transcript_id "MER61_17q11.2"; locus "MER61_17q11.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0340"; model_cov "2940"; model_pct "56.4"; chr17 rmsk exon 29433490 29433815 1839 - . gene_id "MER61_17q11.2"; transcript_id "MER61_17q11.2"; locus "MER61_17q11.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0340"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr17 rmsk exon 29433845 29435848 17858 - . gene_id "MER61_17q11.2"; transcript_id "MER61_17q11.2"; locus "MER61_17q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0340"; repClass "LTR"; repEnd "5172"; repFamily "ERV1"; repLeft "3100"; repStart "-45"; chr17 rmsk exon 29436151 29437050 17858 - . gene_id "MER61_17q11.2"; transcript_id "MER61_17q11.2"; locus "MER61_17q11.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0340"; repClass "LTR"; repEnd "3099"; repFamily "ERV1"; repLeft "2231"; repStart "-2118"; ### ERVLE_17q11.2a ### chr17 rmsk gene 29936703 29938054 . - . gene_id "ERVLE_17q11.2a"; transcript_id "ERVLE_17q11.2a"; locus "ERVLE_17q11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3258"; model_cov "1047"; model_pct "18.5"; chr17 rmsk exon 29936703 29937188 3238 - . gene_id "ERVLE_17q11.2a"; transcript_id "ERVLE_17q11.2a"; locus "ERVLE_17q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3258"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "2274"; repStart "-2904"; chr17 rmsk exon 29937487 29938054 3238 - . gene_id "ERVLE_17q11.2a"; transcript_id "ERVLE_17q11.2a"; locus "ERVLE_17q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3258"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "1715"; repStart "-3394"; ### HML3_17q11.2c ### chr17 rmsk gene 29985397 29991757 . - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0207"; model_cov "5050"; model_pct "83.9"; chr17 rmsk exon 29985397 29985891 3668 - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0207"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 29985892 29986637 33126 - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0207"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5290"; repStart "0"; chr17 rmsk exon 29986947 29990587 33126 - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0207"; repClass "LTR"; repEnd "5289"; repFamily "ERVK"; repLeft "1638"; repStart "-732"; chr17 rmsk exon 29990593 29991256 4942 - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0207"; repClass "LTR"; repEnd "669"; repFamily "ERVK"; repLeft "1"; repStart "-5352"; chr17 rmsk exon 29991257 29991757 3937 - . gene_id "HML3_17q11.2c"; transcript_id "HML3_17q11.2c"; locus "HML3_17q11.2c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0207"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_17q11.2b ### chr17 rmsk gene 30046266 30049234 . + . gene_id "ERVLE_17q11.2b"; transcript_id "ERVLE_17q11.2b"; locus "ERVLE_17q11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3259"; model_cov "2638"; model_pct "46.6"; chr17 rmsk exon 30046266 30048488 4974 + . gene_id "ERVLE_17q11.2b"; transcript_id "ERVLE_17q11.2b"; locus "ERVLE_17q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3259"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "-3335"; repStart "161"; chr17 rmsk exon 30048788 30049234 4974 + . gene_id "ERVLE_17q11.2b"; transcript_id "ERVLE_17q11.2b"; locus "ERVLE_17q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3259"; repClass "LTR"; repEnd "2800"; repFamily "ERVL"; repLeft "-2867"; repStart "2333"; ### ERVLE_17q11.2c ### chr17 rmsk gene 31113848 31115873 . - . gene_id "ERVLE_17q11.2c"; transcript_id "ERVLE_17q11.2c"; locus "ERVLE_17q11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3260"; model_cov "1245"; model_pct "22.0"; chr17 rmsk exon 31113848 31114292 1870 - . gene_id "ERVLE_17q11.2c"; transcript_id "ERVLE_17q11.2c"; locus "ERVLE_17q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3260"; repClass "LTR"; repEnd "5585"; repFamily "ERVL"; repLeft "5113"; repStart "-82"; chr17 rmsk exon 31114873 31115104 1870 - . gene_id "ERVLE_17q11.2c"; transcript_id "ERVLE_17q11.2c"; locus "ERVLE_17q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3260"; repClass "LTR"; repEnd "5107"; repFamily "ERVL"; repLeft "4902"; repStart "-560"; chr17 rmsk exon 31115325 31115580 1870 - . gene_id "ERVLE_17q11.2c"; transcript_id "ERVLE_17q11.2c"; locus "ERVLE_17q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3260"; repClass "LTR"; repEnd "4901"; repFamily "ERVL"; repLeft "4624"; repStart "-766"; chr17 rmsk exon 31115592 31115873 1026 - . gene_id "ERVLE_17q11.2c"; transcript_id "ERVLE_17q11.2c"; locus "ERVLE_17q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3260"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "4261"; repStart "-1115"; ### HERVL_17q11.2 ### chr17 rmsk gene 31183587 31189019 . + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1150"; model_cov "3970"; model_pct "70.2"; chr17 rmsk exon 31183587 31184014 3383 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "3"; chr17 rmsk exon 31184019 31184367 7705 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "345"; repFamily "ERVL"; repLeft "-5309"; repStart "1"; chr17 rmsk exon 31184678 31185333 7705 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "983"; repFamily "ERVL"; repLeft "-4671"; repStart "346"; chr17 rmsk exon 31185329 31187197 23111 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "4546"; repFamily "ERVL"; repLeft "-1108"; repStart "2664"; chr17 rmsk exon 31187495 31188574 23111 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4547"; chr17 rmsk exon 31188575 31189019 3471 + . gene_id "HERVL_17q11.2"; transcript_id "HERVL_17q11.2"; locus "HERVL_17q11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1150"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HML3_17q11.2d ### chr17 rmsk gene 31633108 31639019 . + . gene_id "HML3_17q11.2d"; transcript_id "HML3_17q11.2d"; locus "HML3_17q11.2d"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0208"; model_cov "5057"; model_pct "84.0"; chr17 rmsk exon 31633108 31633609 4010 + . gene_id "HML3_17q11.2d"; transcript_id "HML3_17q11.2d"; locus "HML3_17q11.2d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0208"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "4"; chr17 rmsk exon 31633610 31634265 5014 + . gene_id "HML3_17q11.2d"; transcript_id "HML3_17q11.2d"; locus "HML3_17q11.2d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0208"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "1"; chr17 rmsk exon 31634266 31638526 25035 + . gene_id "HML3_17q11.2d"; transcript_id "HML3_17q11.2d"; locus "HML3_17q11.2d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0208"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "1637"; chr17 rmsk exon 31638527 31639019 3926 + . gene_id "HML3_17q11.2d"; transcript_id "HML3_17q11.2d"; locus "HML3_17q11.2d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0208"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_17q11.2b ### chr17 rmsk gene 31762039 31772128 . + . gene_id "HERV9_17q11.2b"; transcript_id "HERV9_17q11.2b"; locus "HERV9_17q11.2b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0169"; model_cov "8435"; model_pct "100.0"; chr17 rmsk exon 31762039 31762862 6598 + . gene_id "HERV9_17q11.2b"; transcript_id "HERV9_17q11.2b"; locus "HERV9_17q11.2b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0169"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 31762863 31771334 70012 + . gene_id "HERV9_17q11.2b"; transcript_id "HERV9_17q11.2b"; locus "HERV9_17q11.2b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0169"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 31771335 31772128 5161 + . gene_id "HERV9_17q11.2b"; transcript_id "HERV9_17q11.2b"; locus "HERV9_17q11.2b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0169"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; ### HERVH_17q11.2 ### chr17 rmsk gene 32772920 32774241 . + . gene_id "HERVH_17q11.2"; transcript_id "HERVH_17q11.2"; locus "HERVH_17q11.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1108"; model_cov "1214"; model_pct "15.7"; chr17 rmsk exon 32772920 32773029 556 + . gene_id "HERVH_17q11.2"; transcript_id "HERVH_17q11.2"; locus "HERVH_17q11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1108"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "-341"; repStart "1"; chr17 rmsk exon 32773030 32773540 2782 + . gene_id "HERVH_17q11.2"; transcript_id "HERVH_17q11.2"; locus "HERVH_17q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1108"; repClass "LTR"; repEnd "516"; repFamily "ERV1"; repLeft "-7197"; repStart "3"; chr17 rmsk exon 32773536 32774241 3932 + . gene_id "HERVH_17q11.2"; transcript_id "HERVH_17q11.2"; locus "HERVH_17q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1108"; repClass "LTR"; repEnd "1492"; repFamily "ERV1"; repLeft "-6221"; repStart "791"; ### MER4_17q11.2b ### chr17 rmsk gene 32898096 32905976 . - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0725"; model_cov "4261"; model_pct "64.6"; chr17 rmsk exon 32898096 32898556 3040 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0725"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 32898563 32900586 14531 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4500"; repStart "-2"; chr17 rmsk exon 32900881 32900925 14531 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "4499"; repFamily "ERV1"; repLeft "4461"; repStart "-2099"; chr17 rmsk exon 32901215 32901653 14531 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "4460"; repFamily "ERV1"; repLeft "4006"; repStart "-2138"; chr17 rmsk exon 32901663 32902252 2309 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "3585"; repFamily "ERV1"; repLeft "2957"; repStart "-3013"; chr17 rmsk exon 32902225 32902277 383 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "3497"; repFamily "ERV1"; repLeft "3445"; repStart "-3101"; chr17 rmsk exon 32904412 32904760 1417 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "2119"; repStart "-4171"; chr17 rmsk exon 32904892 32905459 2834 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0725"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr17 rmsk exon 32905463 32905502 3000 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0725"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "445"; repStart "0"; chr17 rmsk exon 32905536 32905976 3000 - . gene_id "MER4_17q11.2b"; transcript_id "MER4_17q11.2b"; locus "MER4_17q11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0725"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "1"; repStart "-28"; ### MER4B_17q11.2 ### chr17 rmsk gene 32902514 32904402 . - . gene_id "MER4B_17q11.2"; transcript_id "MER4B_17q11.2"; locus "MER4B_17q11.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0426"; model_cov "1586"; model_pct "23.5"; chr17 rmsk exon 32902514 32902558 3578 - . gene_id "MER4B_17q11.2"; transcript_id "MER4B_17q11.2"; locus "MER4B_17q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0426"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "2590"; repStart "-4131"; chr17 rmsk exon 32902857 32903495 3578 - . gene_id "MER4B_17q11.2"; transcript_id "MER4B_17q11.2"; locus "MER4B_17q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0426"; repClass "LTR"; repEnd "2589"; repFamily "ERV1"; repLeft "1924"; repStart "-4169"; chr17 rmsk exon 32903512 32903732 1279 - . gene_id "MER4B_17q11.2"; transcript_id "MER4B_17q11.2"; locus "MER4B_17q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0426"; repClass "LTR"; repEnd "1156"; repFamily "ERV1"; repLeft "924"; repStart "-5602"; chr17 rmsk exon 32903751 32904402 4669 - . gene_id "MER4B_17q11.2"; transcript_id "MER4B_17q11.2"; locus "MER4B_17q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0426"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "194"; repStart "-5912"; ### HERVP71A_17q11.2a ### chr17 rmsk gene 32964050 32965535 . + . gene_id "HERVP71A_17q11.2a"; transcript_id "HERVP71A_17q11.2a"; locus "HERVP71A_17q11.2a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0071"; model_cov "1032"; model_pct "13.6"; chr17 rmsk exon 32964050 32964510 3691 + . gene_id "HERVP71A_17q11.2a"; transcript_id "HERVP71A_17q11.2a"; locus "HERVP71A_17q11.2a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0071"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 32964511 32965535 7922 + . gene_id "HERVP71A_17q11.2a"; transcript_id "HERVP71A_17q11.2a"; locus "HERVP71A_17q11.2a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0071"; repClass "LTR"; repEnd "1033"; repFamily "ERV1"; repLeft "-6557"; repStart "1"; ### HERVP71A_17q11.2b ### chr17 rmsk gene 32969771 32974333 . + . gene_id "HERVP71A_17q11.2b"; transcript_id "HERVP71A_17q11.2b"; locus "HERVP71A_17q11.2b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0072"; model_cov "3723"; model_pct "49.1"; chr17 rmsk exon 32969771 32970387 4663 + . gene_id "HERVP71A_17q11.2b"; transcript_id "HERVP71A_17q11.2b"; locus "HERVP71A_17q11.2b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0072"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-5941"; repStart "1022"; chr17 rmsk exon 32970517 32972945 23863 + . gene_id "HERVP71A_17q11.2b"; transcript_id "HERVP71A_17q11.2b"; locus "HERVP71A_17q11.2b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0072"; repClass "LTR"; repEnd "6954"; repFamily "ERV1"; repLeft "-636"; repStart "4493"; chr17 rmsk exon 32973245 32973870 23863 + . gene_id "HERVP71A_17q11.2b"; transcript_id "HERVP71A_17q11.2b"; locus "HERVP71A_17q11.2b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0072"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "6955"; chr17 rmsk exon 32973871 32974333 3677 + . gene_id "HERVP71A_17q11.2b"; transcript_id "HERVP71A_17q11.2b"; locus "HERVP71A_17q11.2b"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0072"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_17q12 ### chr17 rmsk gene 34183191 34188994 . + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1109"; model_cov "5052"; model_pct "65.5"; chr17 rmsk exon 34183191 34183623 2736 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 34183624 34186823 20395 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr17 rmsk exon 34186814 34187313 3388 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr17 rmsk exon 34187316 34187980 4090 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr17 rmsk exon 34187982 34188196 1322 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr17 rmsk exon 34188195 34188564 2515 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "7704"; repFamily "ERV1"; repLeft "-9"; repStart "7322"; chr17 rmsk exon 34188574 34188994 2579 + . gene_id "HERVH_17q12"; transcript_id "HERVH_17q12"; locus "HERVH_17q12"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1109"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_17q12a ### chr17 rmsk gene 34290528 34292439 . - . gene_id "ERV316A3_17q12a"; transcript_id "ERV316A3_17q12a"; locus "ERV316A3_17q12a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2459"; model_cov "1599"; model_pct "30.6"; chr17 rmsk exon 34290528 34290866 943 - . gene_id "ERV316A3_17q12a"; transcript_id "ERV316A3_17q12a"; locus "ERV316A3_17q12a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2459"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "3"; repStart "-82"; chr17 rmsk exon 34290871 34292439 4099 - . gene_id "ERV316A3_17q12a"; transcript_id "ERV316A3_17q12a"; locus "ERV316A3_17q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2459"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "3625"; repStart "-2"; ### ERV316A3_17q12b ### chr17 rmsk gene 34298454 34299671 . - . gene_id "ERV316A3_17q12b"; transcript_id "ERV316A3_17q12b"; locus "ERV316A3_17q12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2460"; model_cov "937"; model_pct "17.9"; chr17 rmsk exon 34298454 34299385 1828 - . gene_id "ERV316A3_17q12b"; transcript_id "ERV316A3_17q12b"; locus "ERV316A3_17q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2460"; repClass "LTR"; repEnd "3638"; repFamily "ERVL"; repLeft "2701"; repStart "-1588"; chr17 rmsk exon 34299387 34299671 741 - . gene_id "ERV316A3_17q12b"; transcript_id "ERV316A3_17q12b"; locus "ERV316A3_17q12b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2460"; repClass "LTR"; repEnd "275"; repFamily "ERVL"; repLeft "3"; repStart "-163"; ### ERV316A3_17q12c ### chr17 rmsk gene 34800439 34804619 . - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2461"; model_cov "2787"; model_pct "53.3"; chr17 rmsk exon 34800439 34800937 1528 - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2461"; repClass "LTR"; repEnd "537"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr17 rmsk exon 34801052 34801997 1131 - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2461"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "4174"; repStart "-105"; chr17 rmsk exon 34802011 34803439 1823 - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2461"; repClass "LTR"; repEnd "2230"; repFamily "ERVL"; repLeft "753"; repStart "-2996"; chr17 rmsk exon 34803759 34804132 1823 - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2461"; repClass "LTR"; repEnd "752"; repFamily "ERVL"; repLeft "389"; repStart "-4474"; chr17 rmsk exon 34804305 34804619 837 - . gene_id "ERV316A3_17q12c"; transcript_id "ERV316A3_17q12c"; locus "ERV316A3_17q12c"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2461"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "218"; repStart "0"; ### ERV316A3_17q12d ### chr17 rmsk gene 35231847 35238245 . - . gene_id "ERV316A3_17q12d"; transcript_id "ERV316A3_17q12d"; locus "ERV316A3_17q12d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2462"; model_cov "4089"; model_pct "78.2"; chr17 rmsk exon 35231847 35232262 1865 - . gene_id "ERV316A3_17q12d"; transcript_id "ERV316A3_17q12d"; locus "ERV316A3_17q12d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2462"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "1"; repStart "-33"; chr17 rmsk exon 35232608 35234147 6620 - . gene_id "ERV316A3_17q12d"; transcript_id "ERV316A3_17q12d"; locus "ERV316A3_17q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2462"; repClass "LTR"; repEnd "5173"; repFamily "ERVL"; repLeft "3622"; repStart "-53"; chr17 rmsk exon 35235372 35237909 8166 - . gene_id "ERV316A3_17q12d"; transcript_id "ERV316A3_17q12d"; locus "ERV316A3_17q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2462"; repClass "LTR"; repEnd "3626"; repFamily "ERVL"; repLeft "1088"; repStart "-1600"; chr17 rmsk exon 35238035 35238245 836 - . gene_id "ERV316A3_17q12d"; transcript_id "ERV316A3_17q12d"; locus "ERV316A3_17q12d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2462"; repClass "LTR"; repEnd "218"; repFamily "ERVL"; repLeft "3"; repStart "-244"; ### ERVL_17q12 ### chr17 rmsk gene 35281690 35284875 . + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0414"; model_cov "2712"; model_pct "47.1"; chr17 rmsk exon 35281690 35281982 660 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "1240"; repFamily "ERVL"; repLeft "-4517"; repStart "934"; chr17 rmsk exon 35282148 35282312 660 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "1396"; repFamily "ERVL"; repLeft "-4361"; repStart "1241"; chr17 rmsk exon 35282457 35283295 2328 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "2305"; repFamily "ERVL"; repLeft "-3452"; repStart "1396"; chr17 rmsk exon 35283557 35284162 2328 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "2943"; repFamily "ERVL"; repLeft "-2814"; repStart "2291"; chr17 rmsk exon 35284239 35284355 331 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "3212"; repFamily "ERVL"; repLeft "-2545"; repStart "2988"; chr17 rmsk exon 35284381 35284875 940 + . gene_id "ERVL_17q12"; transcript_id "ERVL_17q12"; locus "ERVL_17q12"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0414"; repClass "LTR"; repEnd "3788"; repFamily "ERVL"; repLeft "-1969"; repStart "3322"; ### LTR19_17q12 ### chr17 rmsk gene 35297637 35300844 . + . gene_id "LTR19_17q12"; transcript_id "LTR19_17q12"; locus "LTR19_17q12"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0049"; model_cov "2503"; model_pct "44.8"; chr17 rmsk exon 35297637 35298074 3162 + . gene_id "LTR19_17q12"; transcript_id "LTR19_17q12"; locus "LTR19_17q12"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0049"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 35298075 35298368 16895 + . gene_id "LTR19_17q12"; transcript_id "LTR19_17q12"; locus "LTR19_17q12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0049"; repClass "LTR"; repEnd "329"; repFamily "ERV1"; repLeft "-5257"; repStart "1"; chr17 rmsk exon 35298424 35300398 16895 + . gene_id "LTR19_17q12"; transcript_id "LTR19_17q12"; locus "LTR19_17q12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0049"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-3218"; repStart "330"; chr17 rmsk exon 35300704 35300844 1148 + . gene_id "LTR19_17q12"; transcript_id "LTR19_17q12"; locus "LTR19_17q12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0049"; repClass "LTR"; repEnd "2506"; repFamily "ERV1"; repLeft "-3080"; repStart "2369"; ### HERV30_17q12 ### chr17 rmsk gene 35304258 35307396 . + . gene_id "HERV30_17q12"; transcript_id "HERV30_17q12"; locus "HERV30_17q12"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0024"; model_cov "2452"; model_pct "29.7"; chr17 rmsk exon 35304258 35305670 10898 + . gene_id "HERV30_17q12"; transcript_id "HERV30_17q12"; locus "HERV30_17q12"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0024"; repClass "LTR"; repEnd "3146"; repFamily "ERV1"; repLeft "-5111"; repStart "1751"; chr17 rmsk exon 35305664 35306693 7381 + . gene_id "HERV30_17q12"; transcript_id "HERV30_17q12"; locus "HERV30_17q12"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0024"; repClass "LTR"; repEnd "8254"; repFamily "ERV1"; repLeft "-3"; repStart "7197"; chr17 rmsk exon 35306697 35307396 5683 + . gene_id "HERV30_17q12"; transcript_id "HERV30_17q12"; locus "HERV30_17q12"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0024"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_17q12a ### chr17 rmsk gene 35453456 35456843 . + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1151"; model_cov "2607"; model_pct "46.1"; chr17 rmsk exon 35453456 35453896 3168 + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1151"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr17 rmsk exon 35453897 35454958 8647 + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1151"; repClass "LTR"; repEnd "1073"; repFamily "ERVL"; repLeft "-4581"; repStart "1"; chr17 rmsk exon 35454962 35456496 12490 + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1151"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4119"; chr17 rmsk exon 35456497 35456728 1731 + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1151"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "-206"; repStart "1"; chr17 rmsk exon 35456726 35456843 757 + . gene_id "HERVL_17q12a"; transcript_id "HERVL_17q12a"; locus "HERVL_17q12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1151"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "277"; ### HERVL74_17q12 ### chr17 rmsk gene 35464720 35470123 . + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0106"; model_cov "3526"; model_pct "62.0"; chr17 rmsk exon 35464720 35464860 7321 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "1187"; repFamily "ERVL"; repLeft "-4498"; repStart "1031"; chr17 rmsk exon 35465180 35465983 7321 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "1982"; repFamily "ERVL"; repLeft "-3703"; repStart "1188"; chr17 rmsk exon 35466433 35467668 7321 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "3340"; repFamily "ERVL"; repLeft "-2345"; repStart "1983"; chr17 rmsk exon 35467658 35467809 663 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3486"; chr17 rmsk exon 35467831 35467897 763 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1716"; repStart "3913"; chr17 rmsk exon 35468211 35468321 763 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3970"; chr17 rmsk exon 35468313 35468409 369 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "4686"; repFamily "ERVL"; repLeft "-999"; repStart "4589"; chr17 rmsk exon 35468418 35468737 1882 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "4969"; repFamily "ERVL"; repLeft "-716"; repStart "4644"; chr17 rmsk exon 35469034 35469278 1882 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-461"; repStart "4970"; chr17 rmsk exon 35469360 35469589 724 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "5603"; repFamily "ERVL"; repLeft "-82"; repStart "5376"; chr17 rmsk exon 35469644 35469696 349 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "53"; repFamily "ERVL"; repLeft "-569"; repStart "1"; chr17 rmsk exon 35469756 35470123 1129 + . gene_id "HERVL74_17q12"; transcript_id "HERVL74_17q12"; locus "HERVL74_17q12"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0106"; repClass "LTR"; repEnd "616"; repFamily "ERVL"; repLeft "-6"; repStart "251"; ### HARLEQUIN_17q12 ### chr17 rmsk gene 35500743 35508365 . + . gene_id "HARLEQUIN_17q12"; transcript_id "HARLEQUIN_17q12"; locus "HARLEQUIN_17q12"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0150"; model_cov "6895"; model_pct "100.0"; chr17 rmsk exon 35500743 35501070 3490 + . gene_id "HARLEQUIN_17q12"; transcript_id "HARLEQUIN_17q12"; locus "HARLEQUIN_17q12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0150"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "141"; chr17 rmsk exon 35501071 35507907 54136 + . gene_id "HARLEQUIN_17q12"; transcript_id "HARLEQUIN_17q12"; locus "HARLEQUIN_17q12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0150"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 35507908 35508365 3771 + . gene_id "HARLEQUIN_17q12"; transcript_id "HARLEQUIN_17q12"; locus "HARLEQUIN_17q12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0150"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER34B_17q12 ### chr17 rmsk gene 35539405 35540411 . - . gene_id "MER34B_17q12"; transcript_id "MER34B_17q12"; locus "MER34B_17q12"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0247"; model_cov "613"; model_pct "11.4"; chr17 rmsk exon 35539405 35539981 958 - . gene_id "MER34B_17q12"; transcript_id "MER34B_17q12"; locus "MER34B_17q12"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0247"; repClass "LTR"; repEnd "-360"; repFamily "ERV1"; repLeft "-973"; repStart "-5716"; chr17 rmsk exon 35539987 35540411 1627 - . gene_id "MER34B_17q12"; transcript_id "MER34B_17q12"; locus "MER34B_17q12"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0247"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "69"; repStart "-3"; ### HERVW_17q12a ### chr17 rmsk gene 35551288 35552593 . + . gene_id "HERVW_17q12a"; transcript_id "HERVW_17q12a"; locus "HERVW_17q12a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0265"; model_cov "1002"; model_pct "11.6"; chr17 rmsk exon 35551288 35552264 5937 + . gene_id "HERVW_17q12a"; transcript_id "HERVW_17q12a"; locus "HERVW_17q12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0265"; repClass "LTR"; repEnd "8360"; repFamily "ERV1"; repLeft "-266"; repStart "7358"; chr17 rmsk exon 35552268 35552593 2883 + . gene_id "HERVW_17q12a"; transcript_id "HERVW_17q12a"; locus "HERVW_17q12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0265"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HUERSP2_17q12 ### chr17 rmsk gene 36007831 36012588 . + . gene_id "HUERSP2_17q12"; transcript_id "HUERSP2_17q12"; locus "HUERSP2_17q12"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0113"; model_cov "3222"; model_pct "100.0"; chr17 rmsk exon 36007831 36008693 3725 + . gene_id "HUERSP2_17q12"; transcript_id "HUERSP2_17q12"; locus "HUERSP2_17q12"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0113"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "0"; repStart "-51"; chr17 rmsk exon 36008695 36011432 15606 + . gene_id "HUERSP2_17q12"; transcript_id "HUERSP2_17q12"; locus "HUERSP2_17q12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0113"; repClass "LTR"; repEnd "2801"; repFamily "ERV1"; repLeft "-287"; repStart "2"; chr17 rmsk exon 36011433 36011848 2545 + . gene_id "HUERSP2_17q12"; transcript_id "HUERSP2_17q12"; locus "HUERSP2_17q12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0113"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2665"; chr17 rmsk exon 36011849 36012588 4937 + . gene_id "HUERSP2_17q12"; transcript_id "HUERSP2_17q12"; locus "HUERSP2_17q12"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0113"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### ERV316A3_17q12e ### chr17 rmsk gene 36061399 36063169 . + . gene_id "ERV316A3_17q12e"; transcript_id "ERV316A3_17q12e"; locus "ERV316A3_17q12e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2463"; model_cov "1425"; model_pct "27.3"; chr17 rmsk exon 36061399 36062150 2852 + . gene_id "ERV316A3_17q12e"; transcript_id "ERV316A3_17q12e"; locus "ERV316A3_17q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2463"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "-3697"; repStart "800"; chr17 rmsk exon 36062146 36062721 2147 + . gene_id "ERV316A3_17q12e"; transcript_id "ERV316A3_17q12e"; locus "ERV316A3_17q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2463"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "-2594"; repStart "2049"; chr17 rmsk exon 36063032 36063169 2147 + . gene_id "ERV316A3_17q12e"; transcript_id "ERV316A3_17q12e"; locus "ERV316A3_17q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2463"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "2633"; ### HERVL_17q12b ### chr17 rmsk gene 36111494 36116344 . + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1152"; model_cov "4032"; model_pct "71.3"; chr17 rmsk exon 36111494 36111743 1697 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "1"; chr17 rmsk exon 36111741 36111839 544 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "350"; chr17 rmsk exon 36111840 36113213 6974 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "-4405"; repStart "-102"; chr17 rmsk exon 36113212 36115348 17706 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "4663"; repFamily "ERVL"; repLeft "-991"; repStart "2491"; chr17 rmsk exon 36115346 36115864 3915 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5145"; chr17 rmsk exon 36115865 36116246 3004 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr17 rmsk exon 36116305 36116344 3004 + . gene_id "HERVL_17q12b"; transcript_id "HERVL_17q12b"; locus "HERVL_17q12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1152"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "400"; ### ERVLB4_17q12 ### chr17 rmsk gene 36131939 36132906 . + . gene_id "ERVLB4_17q12"; transcript_id "ERVLB4_17q12"; locus "ERVLB4_17q12"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1582"; model_cov "958"; model_pct "16.8"; chr17 rmsk exon 36131939 36132358 920 + . gene_id "ERVLB4_17q12"; transcript_id "ERVLB4_17q12"; locus "ERVLB4_17q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1582"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "-2879"; repStart "2412"; chr17 rmsk exon 36132408 36132906 1057 + . gene_id "ERVLB4_17q12"; transcript_id "ERVLB4_17q12"; locus "ERVLB4_17q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1582"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-2138"; repStart "3041"; ### ERVLE_17q12 ### chr17 rmsk gene 36143059 36144653 . + . gene_id "ERVLE_17q12"; transcript_id "ERVLE_17q12"; locus "ERVLE_17q12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3265"; model_cov "1444"; model_pct "25.5"; chr17 rmsk exon 36143059 36143416 931 + . gene_id "ERVLE_17q12"; transcript_id "ERVLE_17q12"; locus "ERVLE_17q12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3265"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-5275"; repStart "19"; chr17 rmsk exon 36143471 36143929 566 + . gene_id "ERVLE_17q12"; transcript_id "ERVLE_17q12"; locus "ERVLE_17q12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3265"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-4704"; repStart "491"; chr17 rmsk exon 36144057 36144653 1718 + . gene_id "ERVLE_17q12"; transcript_id "ERVLE_17q12"; locus "ERVLE_17q12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3265"; repClass "LTR"; repEnd "2208"; repFamily "ERVL"; repLeft "-3459"; repStart "1609"; ### HERVL_17q12c ### chr17 rmsk gene 36217318 36222486 . + . gene_id "HERVL_17q12c"; transcript_id "HERVL_17q12c"; locus "HERVL_17q12c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1153"; model_cov "4756"; model_pct "84.1"; chr17 rmsk exon 36217318 36217379 375 + . gene_id "HERVL_17q12c"; transcript_id "HERVL_17q12c"; locus "HERVL_17q12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1153"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "198"; chr17 rmsk exon 36217377 36217422 242 + . gene_id "HERVL_17q12c"; transcript_id "HERVL_17q12c"; locus "HERVL_17q12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1153"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "350"; chr17 rmsk exon 36217687 36222486 36136 + . gene_id "HERVL_17q12c"; transcript_id "HERVL_17q12c"; locus "HERVL_17q12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1153"; repClass "LTR"; repEnd "4757"; repFamily "ERVL"; repLeft "-897"; repStart "1"; ### HERVW_17q12b ### chr17 rmsk gene 37332949 37336681 . + . gene_id "HERVW_17q12b"; transcript_id "HERVW_17q12b"; locus "HERVW_17q12b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0266"; model_cov "3406"; model_pct "39.5"; chr17 rmsk exon 37332949 37336355 28681 + . gene_id "HERVW_17q12b"; transcript_id "HERVW_17q12b"; locus "HERVW_17q12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0266"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "5220"; chr17 rmsk exon 37336356 37336681 2701 + . gene_id "HERVW_17q12b"; transcript_id "HERVW_17q12b"; locus "HERVW_17q12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0266"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLE_17q21.1 ### chr17 rmsk gene 39892447 39893270 . - . gene_id "ERVLE_17q21.1"; transcript_id "ERVLE_17q21.1"; locus "ERVLE_17q21.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3266"; model_cov "745"; model_pct "13.1"; chr17 rmsk exon 39892447 39892614 637 - . gene_id "ERVLE_17q21.1"; transcript_id "ERVLE_17q21.1"; locus "ERVLE_17q21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3266"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "4914"; repStart "-578"; chr17 rmsk exon 39892707 39893270 2696 - . gene_id "ERVLE_17q21.1"; transcript_id "ERVLE_17q21.1"; locus "ERVLE_17q21.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3266"; repClass "LTR"; repEnd "4842"; repFamily "ERVL"; repLeft "4272"; repStart "-825"; ### ERVLE_17q21.2a ### chr17 rmsk gene 41019582 41024430 . - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3267"; model_cov "2773"; model_pct "48.9"; chr17 rmsk exon 41019582 41019918 1073 - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3267"; repClass "LTR"; repEnd "3397"; repFamily "ERVL"; repLeft "3044"; repStart "-2270"; chr17 rmsk exon 41020103 41021229 3228 - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3267"; repClass "LTR"; repEnd "3041"; repFamily "ERVL"; repLeft "1873"; repStart "-2626"; chr17 rmsk exon 41021971 41022111 290 - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3267"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "1478"; repStart "-4046"; chr17 rmsk exon 41022469 41022886 1034 - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3267"; repClass "LTR"; repEnd "1295"; repFamily "ERVL"; repLeft "880"; repStart "-4372"; chr17 rmsk exon 41023732 41024430 1034 - . gene_id "ERVLE_17q21.2a"; transcript_id "ERVLE_17q21.2a"; locus "ERVLE_17q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3267"; repClass "LTR"; repEnd "879"; repFamily "ERVL"; repLeft "185"; repStart "-4788"; ### MER4_17q21.2a ### chr17 rmsk gene 41087446 41088933 . + . gene_id "MER4_17q21.2a"; transcript_id "MER4_17q21.2a"; locus "MER4_17q21.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0726"; model_cov "1004"; model_pct "15.2"; chr17 rmsk exon 41087446 41087940 3147 + . gene_id "MER4_17q21.2a"; transcript_id "MER4_17q21.2a"; locus "MER4_17q21.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0726"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 41087954 41088543 1853 + . gene_id "MER4_17q21.2a"; transcript_id "MER4_17q21.2a"; locus "MER4_17q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0726"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "12"; chr17 rmsk exon 41088531 41088617 364 + . gene_id "MER4_17q21.2a"; transcript_id "MER4_17q21.2a"; locus "MER4_17q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0726"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr17 rmsk exon 41088695 41088933 948 + . gene_id "MER4_17q21.2a"; transcript_id "MER4_17q21.2a"; locus "MER4_17q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0726"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4230"; repStart "2121"; ### MER4_17q21.2b ### chr17 rmsk gene 41089014 41095763 . + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0727"; model_cov "4646"; model_pct "70.4"; chr17 rmsk exon 41089014 41089172 1016 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "-6407"; repStart "34"; chr17 rmsk exon 41089170 41089383 1428 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "477"; chr17 rmsk exon 41090126 41090324 1318 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "985"; repFamily "ERV1"; repLeft "-5613"; repStart "782"; chr17 rmsk exon 41090382 41091069 4083 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr17 rmsk exon 41091209 41091725 1349 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3091"; chr17 rmsk exon 41091725 41093626 10806 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "5865"; repFamily "ERV1"; repLeft "-733"; repStart "3837"; chr17 rmsk exon 41094588 41095302 10806 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0727"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "5866"; chr17 rmsk exon 41095314 41095763 3239 + . gene_id "MER4_17q21.2b"; transcript_id "MER4_17q21.2b"; locus "MER4_17q21.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0727"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_17q21.2c ### chr17 rmsk gene 41107484 41108937 . + . gene_id "MER4_17q21.2c"; transcript_id "MER4_17q21.2c"; locus "MER4_17q21.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0728"; model_cov "1018"; model_pct "15.4"; chr17 rmsk exon 41107484 41107951 3249 + . gene_id "MER4_17q21.2c"; transcript_id "MER4_17q21.2c"; locus "MER4_17q21.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0728"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 41107955 41108546 2020 + . gene_id "MER4_17q21.2c"; transcript_id "MER4_17q21.2c"; locus "MER4_17q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0728"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr17 rmsk exon 41108534 41108620 347 + . gene_id "MER4_17q21.2c"; transcript_id "MER4_17q21.2c"; locus "MER4_17q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0728"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr17 rmsk exon 41108695 41108937 954 + . gene_id "MER4_17q21.2c"; transcript_id "MER4_17q21.2c"; locus "MER4_17q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0728"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4230"; repStart "2118"; ### MER4_17q21.2d ### chr17 rmsk gene 41109018 41116054 . + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0729"; model_cov "4843"; model_pct "73.4"; chr17 rmsk exon 41109018 41109176 1009 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "-6407"; repStart "34"; chr17 rmsk exon 41109174 41109387 1428 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "477"; chr17 rmsk exon 41110135 41110336 1289 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "988"; repFamily "ERV1"; repLeft "-5610"; repStart "782"; chr17 rmsk exon 41110399 41111086 3938 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr17 rmsk exon 41111326 41111378 412 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-3809"; repStart "2737"; chr17 rmsk exon 41111378 41112030 1802 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2954"; chr17 rmsk exon 41112030 41113921 11022 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "5865"; repFamily "ERV1"; repLeft "-733"; repStart "3837"; chr17 rmsk exon 41114884 41115602 11022 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0729"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5866"; chr17 rmsk exon 41115606 41116054 3338 + . gene_id "MER4_17q21.2d"; transcript_id "MER4_17q21.2d"; locus "MER4_17q21.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0729"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### ERV316A3_17q21.2 ### chr17 rmsk gene 41172605 41176515 . + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2464"; model_cov "2364"; model_pct "45.2"; chr17 rmsk exon 41172605 41172627 537 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "-3833"; repStart "1371"; chr17 rmsk exon 41172883 41173293 537 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-3429"; repStart "1394"; chr17 rmsk exon 41173907 41174293 789 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "1987"; repFamily "ERVL"; repLeft "-3239"; repStart "1592"; chr17 rmsk exon 41174305 41174946 687 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "2288"; repFamily "ERVL"; repLeft "-2938"; repStart "1683"; chr17 rmsk exon 41175002 41175093 356 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "3803"; repFamily "ERVL"; repLeft "-1423"; repStart "3710"; chr17 rmsk exon 41175099 41175970 1576 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "4999"; repFamily "ERVL"; repLeft "-227"; repStart "4153"; chr17 rmsk exon 41176092 41176515 669 + . gene_id "ERV316A3_17q21.2"; transcript_id "ERV316A3_17q21.2"; locus "ERV316A3_17q21.2"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2464"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-22"; repStart "21"; ### ERVLE_17q21.2b ### chr17 rmsk gene 41557971 41561541 . + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3271"; model_cov "1129"; model_pct "19.9"; chr17 rmsk exon 41557971 41558169 311 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-5189"; repStart "272"; chr17 rmsk exon 41558628 41558825 314 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "1412"; repFamily "ERVL"; repLeft "-4255"; repStart "1222"; chr17 rmsk exon 41559854 41559954 291 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "1772"; repFamily "ERVL"; repLeft "-3895"; repStart "1637"; chr17 rmsk exon 41560139 41560287 395 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "2051"; repFamily "ERVL"; repLeft "-3616"; repStart "1903"; chr17 rmsk exon 41560770 41560886 501 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "2101"; repFamily "ERVL"; repLeft "-3566"; repStart "1976"; chr17 rmsk exon 41560938 41560995 647 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "-3394"; repStart "2203"; chr17 rmsk exon 41561307 41561541 647 + . gene_id "ERVLE_17q21.2b"; transcript_id "ERVLE_17q21.2b"; locus "ERVLE_17q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3271"; repClass "LTR"; repEnd "2529"; repFamily "ERVL"; repLeft "-3138"; repStart "2274"; ### HARLEQUIN_17q21.31 ### chr17 rmsk gene 43160246 43167698 . - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0151"; model_cov "6428"; model_pct "93.2"; chr17 rmsk exon 43160246 43160720 3520 - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0151"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 43160721 43165886 41588 - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0151"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1675"; repStart "0"; chr17 rmsk exon 43165935 43166045 41588 - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0151"; repClass "LTR"; repEnd "1674"; repFamily "ERV1"; repLeft "1570"; repStart "-5222"; chr17 rmsk exon 43166029 43167245 7264 - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0151"; repClass "LTR"; repEnd "1104"; repFamily "ERV1"; repLeft "1"; repStart "-5792"; chr17 rmsk exon 43167247 43167698 3514 - . gene_id "HARLEQUIN_17q21.31"; transcript_id "HARLEQUIN_17q21.31"; locus "HARLEQUIN_17q21.31"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0151"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### HML4_17q21.31 ### chr17 rmsk gene 43323118 43351750 . - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; category "mergeable*"; intModel "HERVK13-int"; locid "HERVK13-int_0019"; model_cov "7891"; model_pct "97.2"; chr17 rmsk exon 43323118 43324160 4490 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "11"; repStart "0"; chr17 rmsk exon 43324163 43325133 5721 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "54"; repStart "0"; chr17 rmsk exon 43325134 43331647 17657 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "1070"; repStart "0"; chr17 rmsk exon 43331853 43332405 1686 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1484"; repFamily "ERVK"; repLeft "933"; repStart "-6632"; chr17 rmsk exon 43332634 43332912 511 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "853"; repFamily "ERVK"; repLeft "675"; repStart "-7263"; chr17 rmsk exon 43332947 43333690 3184 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "764"; repFamily "ERVK"; repLeft "1"; repStart "-7352"; chr17 rmsk exon 43333691 43334680 6245 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "5"; repStart "0"; chr17 rmsk exon 43334681 43335652 7447 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13A"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 43335663 43337361 8788 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "6435"; repStart "0"; chr17 rmsk exon 43337363 43338398 3993 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1817"; repFamily "ERVK"; repLeft "720"; repStart "-6299"; chr17 rmsk exon 43338416 43339411 7854 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 43339412 43345762 15956 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "1611"; repStart "0"; chr17 rmsk exon 43346837 43347390 1565 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1627"; repFamily "ERVK"; repLeft "1085"; repStart "-6489"; chr17 rmsk exon 43347686 43347802 302 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "868"; repFamily "ERVK"; repLeft "755"; repStart "-7248"; chr17 rmsk exon 43347911 43348633 3068 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "732"; repFamily "ERVK"; repLeft "1"; repStart "-7384"; chr17 rmsk exon 43348634 43349626 7753 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 43349629 43349687 311 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "779"; repFamily "ERVK"; repLeft "720"; repStart "-7337"; chr17 rmsk exon 43349687 43350251 3651 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "820"; repFamily "ERVK"; repLeft "220"; repStart "-7296"; chr17 rmsk exon 43350543 43350758 3651 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "219"; repFamily "ERVK"; repLeft "2"; repStart "-7897"; chr17 rmsk exon 43350760 43351750 5042 - . gene_id "HML4_17q21.31"; transcript_id "HML4_17q21.31"; locus "HML4_17q21.31"; repName "LTR13A"; geneRegion "ltr"; locid "HERVK13-int_0019"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "1"; repStart "-1"; ### PRIMA41_17q21.31a ### chr17 rmsk gene 43352269 43353956 . - . gene_id "PRIMA41_17q21.31a"; transcript_id "PRIMA41_17q21.31a"; locus "PRIMA41_17q21.31a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0130"; model_cov "1224"; model_pct "15.8"; chr17 rmsk exon 43352269 43352788 3928 - . gene_id "PRIMA41_17q21.31a"; transcript_id "PRIMA41_17q21.31a"; locus "PRIMA41_17q21.31a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0130"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 43352789 43353333 3905 - . gene_id "PRIMA41_17q21.31a"; transcript_id "PRIMA41_17q21.31a"; locus "PRIMA41_17q21.31a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0130"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7208"; repStart "0"; chr17 rmsk exon 43353330 43353956 7195 - . gene_id "PRIMA41_17q21.31a"; transcript_id "PRIMA41_17q21.31a"; locus "PRIMA41_17q21.31a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0130"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "5719"; repStart "-1361"; ### PRIMA41_17q21.31b ### chr17 rmsk gene 43354075 43360454 . - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0131"; model_cov "3781"; model_pct "48.7"; chr17 rmsk exon 43354075 43354951 7195 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "5446"; repStart "-1361"; chr17 rmsk exon 43355914 43356130 1520 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "4610"; repFamily "ERV1"; repLeft "4394"; repStart "-3146"; chr17 rmsk exon 43356126 43356531 10674 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "2617"; repStart "-4701"; chr17 rmsk exon 43357144 43357500 10674 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "2616"; repFamily "ERV1"; repLeft "2315"; repStart "-5140"; chr17 rmsk exon 43357800 43358726 10674 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "2314"; repFamily "ERV1"; repLeft "1363"; repStart "-5442"; chr17 rmsk exon 43358719 43358915 5449 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "732"; repStart "-6826"; chr17 rmsk exon 43359217 43359892 5449 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "731"; repFamily "ERV1"; repLeft "3"; repStart "-7025"; chr17 rmsk exon 43359957 43360454 3359 - . gene_id "PRIMA41_17q21.31b"; transcript_id "PRIMA41_17q21.31b"; locus "PRIMA41_17q21.31b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0131"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HML6_17q21.31 ### chr17 rmsk gene 43871997 43874812 . + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0074"; model_cov "1746"; model_pct "24.2"; chr17 rmsk exon 43871997 43872421 2931 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "443"; repFamily "ERVK"; repLeft "-56"; repStart "1"; chr17 rmsk exon 43872528 43872727 1102 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "28"; chr17 rmsk exon 43872779 43872892 504 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "641"; repFamily "ERVK"; repLeft "-6561"; repStart "531"; chr17 rmsk exon 43872885 43873852 5654 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "2268"; repFamily "ERVK"; repLeft "-4934"; repStart "1285"; chr17 rmsk exon 43873852 43874324 2295 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "6742"; repFamily "ERVK"; repLeft "-460"; repStart "6293"; chr17 rmsk exon 43874360 43874772 2589 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-57"; repStart "1"; chr17 rmsk exon 43874773 43874812 236 + . gene_id "HML6_17q21.31"; transcript_id "HML6_17q21.31"; locus "HML6_17q21.31"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0074"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "-62"; repStart "398"; ### HERVL66_17q21.31 ### chr17 rmsk gene 44019062 44023425 . - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0022"; model_cov "2955"; model_pct "68.3"; chr17 rmsk exon 44019062 44019706 3982 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr17 rmsk exon 44019707 44020376 3622 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3569"; repStart "0"; chr17 rmsk exon 44020366 44020438 4723 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "3360"; repFamily "ERVL"; repLeft "3288"; repStart "-969"; chr17 rmsk exon 44020739 44021379 4723 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "2654"; repStart "-1042"; chr17 rmsk exon 44021360 44021718 2639 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1436"; repStart "-2532"; chr17 rmsk exon 44021719 44022830 8301 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "1130"; repFamily "ERVL"; repLeft "1"; repStart "-3199"; chr17 rmsk exon 44022831 44023425 4371 - . gene_id "HERVL66_17q21.31"; transcript_id "HERVL66_17q21.31"; locus "HERVL66_17q21.31"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0022"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### ERVLE_17q21.31 ### chr17 rmsk gene 44292787 44299505 . - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3272"; model_cov "4119"; model_pct "72.7"; chr17 rmsk exon 44292787 44292943 532 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "4784"; repFamily "ERVL"; repLeft "4627"; repStart "-883"; chr17 rmsk exon 44293369 44294120 2413 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "4316"; repFamily "ERVL"; repLeft "3556"; repStart "-1351"; chr17 rmsk exon 44294405 44295021 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "2860"; repStart "-2112"; chr17 rmsk exon 44295313 44295655 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "2522"; repFamily "ERVL"; repLeft "2141"; repStart "-3145"; chr17 rmsk exon 44295944 44296347 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "2140"; repFamily "ERVL"; repLeft "1703"; repStart "-3527"; chr17 rmsk exon 44296650 44297322 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "1702"; repFamily "ERVL"; repLeft "1016"; repStart "-3965"; chr17 rmsk exon 44297668 44297725 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "1015"; repFamily "ERVL"; repLeft "967"; repStart "-4652"; chr17 rmsk exon 44298027 44298586 3253 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "966"; repFamily "ERVL"; repLeft "345"; repStart "-4701"; chr17 rmsk exon 44298854 44298961 3156 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "785"; repFamily "ERVL"; repLeft "689"; repStart "-4882"; chr17 rmsk exon 44299260 44299505 3156 - . gene_id "ERVLE_17q21.31"; transcript_id "ERVLE_17q21.31"; locus "ERVLE_17q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3272"; repClass "LTR"; repEnd "688"; repFamily "ERVL"; repLeft "450"; repStart "-4979"; ### HUERSP2_17q21.31 ### chr17 rmsk gene 44564484 44566500 . - . gene_id "HUERSP2_17q21.31"; transcript_id "HUERSP2_17q21.31"; locus "HUERSP2_17q21.31"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0114"; model_cov "2019"; model_pct "65.4"; chr17 rmsk exon 44564484 44564536 321 - . gene_id "HUERSP2_17q21.31"; transcript_id "HUERSP2_17q21.31"; locus "HUERSP2_17q21.31"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0114"; repClass "LTR"; repEnd "53"; repFamily "ERV1"; repLeft "1"; repStart "-784"; chr17 rmsk exon 44564537 44565335 4882 - . gene_id "HUERSP2_17q21.31"; transcript_id "HUERSP2_17q21.31"; locus "HUERSP2_17q21.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0114"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2263"; repStart "0"; chr17 rmsk exon 44565321 44566500 6499 - . gene_id "HUERSP2_17q21.31"; transcript_id "HUERSP2_17q21.31"; locus "HUERSP2_17q21.31"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0114"; repClass "LTR"; repEnd "1549"; repFamily "ERV1"; repLeft "355"; repStart "-1539"; ### ERV316A3_17q21.31 ### chr17 rmsk gene 45881546 45888812 . - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2481"; model_cov "3715"; model_pct "71.1"; chr17 rmsk exon 45881546 45882228 6392 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "3323"; repStart "-1031"; chr17 rmsk exon 45882534 45883810 6392 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "2507"; repStart "-1463"; chr17 rmsk exon 45885474 45885914 1478 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "1769"; repStart "-2854"; chr17 rmsk exon 45886225 45886363 1478 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "1408"; repStart "-3688"; chr17 rmsk exon 45886906 45887030 2154 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "1413"; repFamily "ERVL"; repLeft "1287"; repStart "-3813"; chr17 rmsk exon 45887348 45887567 2154 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1070"; repStart "-3940"; chr17 rmsk exon 45887895 45888222 2154 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "728"; repStart "-4157"; chr17 rmsk exon 45888276 45888431 932 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "872"; repFamily "ERVL"; repLeft "721"; repStart "-4354"; chr17 rmsk exon 45888791 45888812 897 - . gene_id "ERV316A3_17q21.31"; transcript_id "ERV316A3_17q21.31"; locus "ERV316A3_17q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2481"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "700"; repStart "-4506"; ### HERVIP10FH_17q21.32 ### chr17 rmsk gene 47064835 47068369 . - . gene_id "HERVIP10FH_17q21.32"; transcript_id "HERVIP10FH_17q21.32"; locus "HERVIP10FH_17q21.32"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0160"; model_cov "2802"; model_pct "54.9"; chr17 rmsk exon 47064835 47065403 3459 - . gene_id "HERVIP10FH_17q21.32"; transcript_id "HERVIP10FH_17q21.32"; locus "HERVIP10FH_17q21.32"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0160"; repClass "LTR"; repEnd "570"; repFamily "ERV1"; repLeft "1"; repStart "-63"; chr17 rmsk exon 47065564 47068369 6357 - . gene_id "HERVIP10FH_17q21.32"; transcript_id "HERVIP10FH_17q21.32"; locus "HERVIP10FH_17q21.32"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0160"; repClass "LTR"; repEnd "4843"; repFamily "ERV1"; repLeft "2041"; repStart "-259"; ### MER41_17q21.32a ### chr17 rmsk gene 48978283 48979748 . + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0481"; model_cov "675"; model_pct "11.4"; chr17 rmsk exon 48978283 48978431 1010 + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0481"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "486"; chr17 rmsk exon 48978432 48978516 538 + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0481"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chr17 rmsk exon 48978512 48978799 3985 + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0481"; repClass "LTR"; repEnd "4924"; repFamily "ERV1"; repLeft "-1022"; repStart "4639"; chr17 rmsk exon 48979110 48979406 3985 + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0481"; repClass "LTR"; repEnd "5195"; repFamily "ERV1"; repLeft "-751"; repStart "4925"; chr17 rmsk exon 48979713 48979748 3985 + . gene_id "MER41_17q21.32a"; transcript_id "MER41_17q21.32a"; locus "MER41_17q21.32a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0481"; repClass "LTR"; repEnd "5229"; repFamily "ERV1"; repLeft "-717"; repStart "5196"; ### MER41_17q21.32b ### chr17 rmsk gene 49074208 49077089 . - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0482"; model_cov "1914"; model_pct "32.2"; chr17 rmsk exon 49074208 49074344 828 - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0482"; repClass "LTR"; repEnd "1768"; repFamily "ERV1"; repLeft "1627"; repStart "-4178"; chr17 rmsk exon 49074324 49075764 11171 - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0482"; repClass "LTR"; repEnd "1775"; repFamily "ERV1"; repLeft "328"; repStart "-4171"; chr17 rmsk exon 49076066 49076370 11171 - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0482"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "1"; repStart "-5619"; chr17 rmsk exon 49076371 49076494 967 - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0482"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "511"; repStart "0"; chr17 rmsk exon 49076572 49077089 3820 - . gene_id "MER41_17q21.32b"; transcript_id "MER41_17q21.32b"; locus "MER41_17q21.32b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0482"; repClass "LTR"; repEnd "527"; repFamily "ERV1"; repLeft "1"; repStart "-107"; ### ERVLE_17q21.32 ### chr17 rmsk gene 49090362 49092998 . + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3277"; model_cov "1219"; model_pct "21.5"; chr17 rmsk exon 49090362 49090403 974 + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3277"; repClass "LTR"; repEnd "3941"; repFamily "ERVL"; repLeft "-1726"; repStart "3901"; chr17 rmsk exon 49090828 49091193 974 + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3277"; repClass "LTR"; repEnd "4301"; repFamily "ERVL"; repLeft "-1366"; repStart "3942"; chr17 rmsk exon 49091547 49091583 974 + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3277"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "-1334"; repStart "4302"; chr17 rmsk exon 49091570 49092113 1618 + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3277"; repClass "LTR"; repEnd "4583"; repFamily "ERVL"; repLeft "-1084"; repStart "4010"; chr17 rmsk exon 49092788 49092998 472 + . gene_id "ERVLE_17q21.32"; transcript_id "ERVLE_17q21.32"; locus "ERVLE_17q21.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3277"; repClass "LTR"; repEnd "4873"; repFamily "ERVL"; repLeft "-794"; repStart "4657"; ### LTR19_17q21.32 ### chr17 rmsk gene 49121864 49129963 . - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0050"; model_cov "5593"; model_pct "100.0"; chr17 rmsk exon 49121864 49122302 3190 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 49122303 49125147 23477 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "2727"; repStart "0"; chr17 rmsk exon 49125460 49125557 23477 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "2726"; repFamily "ERV1"; repLeft "2629"; repStart "-2860"; chr17 rmsk exon 49126517 49126638 18248 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "2639"; repFamily "ERV1"; repLeft "2528"; repStart "-2947"; chr17 rmsk exon 49127004 49129523 18248 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "2527"; repFamily "ERV1"; repLeft "1"; repStart "-3059"; chr17 rmsk exon 49129524 49129963 3047 - . gene_id "LTR19_17q21.32"; transcript_id "LTR19_17q21.32"; locus "LTR19_17q21.32"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0050"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_17q21.32 ### chr17 rmsk gene 49144730 49146306 . - . gene_id "HERVL_17q21.32"; transcript_id "HERVL_17q21.32"; locus "HERVL_17q21.32"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1154"; model_cov "1142"; model_pct "20.2"; chr17 rmsk exon 49144730 49145173 2921 - . gene_id "HERVL_17q21.32"; transcript_id "HERVL_17q21.32"; locus "HERVL_17q21.32"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1154"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr17 rmsk exon 49145174 49146306 9562 - . gene_id "HERVL_17q21.32"; transcript_id "HERVL_17q21.32"; locus "HERVL_17q21.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1154"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4512"; repStart "0"; ### HML3_17q21.32 ### chr17 rmsk gene 49170645 49176690 . - . gene_id "HML3_17q21.32"; transcript_id "HML3_17q21.32"; locus "HML3_17q21.32"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0209"; model_cov "5071"; model_pct "84.2"; chr17 rmsk exon 49170645 49171153 4088 - . gene_id "HML3_17q21.32"; transcript_id "HML3_17q21.32"; locus "HML3_17q21.32"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0209"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr17 rmsk exon 49171155 49175653 35182 - . gene_id "HML3_17q21.32"; transcript_id "HML3_17q21.32"; locus "HML3_17q21.32"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0209"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "1502"; repStart "-1"; chr17 rmsk exon 49175654 49176201 3937 - . gene_id "HML3_17q21.32"; transcript_id "HML3_17q21.32"; locus "HML3_17q21.32"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0209"; repClass "LTR"; repEnd "554"; repFamily "ERVK"; repLeft "1"; repStart "-5467"; chr17 rmsk exon 49176202 49176690 3761 - . gene_id "HML3_17q21.32"; transcript_id "HML3_17q21.32"; locus "HML3_17q21.32"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0209"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_17q21.32 ### chr17 rmsk gene 49202488 49204391 . + . gene_id "ERVLB4_17q21.32"; transcript_id "ERVLB4_17q21.32"; locus "ERVLB4_17q21.32"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1585"; model_cov "833"; model_pct "14.6"; chr17 rmsk exon 49202488 49202642 323 + . gene_id "ERVLB4_17q21.32"; transcript_id "ERVLB4_17q21.32"; locus "ERVLB4_17q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1585"; repClass "LTR"; repEnd "4046"; repFamily "ERVL"; repLeft "-1668"; repStart "3881"; chr17 rmsk exon 49202656 49203018 839 + . gene_id "ERVLB4_17q21.32"; transcript_id "ERVLB4_17q21.32"; locus "ERVLB4_17q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1585"; repClass "LTR"; repEnd "4512"; repFamily "ERVL"; repLeft "-1202"; repStart "4102"; chr17 rmsk exon 49203264 49203405 264 + . gene_id "ERVLB4_17q21.32"; transcript_id "ERVLB4_17q21.32"; locus "ERVLB4_17q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1585"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "-1066"; repStart "4500"; chr17 rmsk exon 49204282 49204391 272 + . gene_id "ERVLB4_17q21.32"; transcript_id "ERVLB4_17q21.32"; locus "ERVLB4_17q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1585"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "-425"; repStart "5179"; ### ERV316A3_17q21.32 ### chr17 rmsk gene 49273848 49279406 . - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2482"; model_cov "2459"; model_pct "47.1"; chr17 rmsk exon 49273848 49274307 3133 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "4199"; repFamily "ERVL"; repLeft "3731"; repStart "-1027"; chr17 rmsk exon 49274590 49275213 3133 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "3730"; repFamily "ERVL"; repLeft "3186"; repStart "-1496"; chr17 rmsk exon 49275370 49275531 354 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "3040"; repFamily "ERVL"; repLeft "2876"; repStart "-2186"; chr17 rmsk exon 49275889 49276115 654 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "2853"; repFamily "ERVL"; repLeft "2623"; repStart "-2373"; chr17 rmsk exon 49276788 49277054 455 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "1759"; repFamily "ERVL"; repLeft "1456"; repStart "-3467"; chr17 rmsk exon 49277344 49277501 764 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "1361"; repFamily "ERVL"; repLeft "1214"; repStart "-3865"; chr17 rmsk exon 49277800 49277931 1596 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "1073"; repStart "-4015"; chr17 rmsk exon 49278642 49278977 1596 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "1072"; repFamily "ERVL"; repLeft "725"; repStart "-4154"; chr17 rmsk exon 49279287 49279406 1596 - . gene_id "ERV316A3_17q21.32"; transcript_id "ERV316A3_17q21.32"; locus "ERV316A3_17q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2482"; repClass "LTR"; repEnd "724"; repFamily "ERVL"; repLeft "606"; repStart "-4502"; ### ERV316A3_17q21.33a ### chr17 rmsk gene 50317558 50319950 . + . gene_id "ERV316A3_17q21.33a"; transcript_id "ERV316A3_17q21.33a"; locus "ERV316A3_17q21.33a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2485"; model_cov "1425"; model_pct "27.3"; chr17 rmsk exon 50317558 50317979 890 + . gene_id "ERV316A3_17q21.33a"; transcript_id "ERV316A3_17q21.33a"; locus "ERV316A3_17q21.33a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2485"; repClass "LTR"; repEnd "424"; repFamily "ERVL"; repLeft "-14"; repStart "36"; chr17 rmsk exon 50318061 50319305 1741 + . gene_id "ERV316A3_17q21.33a"; transcript_id "ERV316A3_17q21.33a"; locus "ERV316A3_17q21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2485"; repClass "LTR"; repEnd "1655"; repFamily "ERVL"; repLeft "-3571"; repStart "331"; chr17 rmsk exon 50319852 50319950 1741 + . gene_id "ERV316A3_17q21.33a"; transcript_id "ERV316A3_17q21.33a"; locus "ERV316A3_17q21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2485"; repClass "LTR"; repEnd "1757"; repFamily "ERVL"; repLeft "-3469"; repStart "1656"; ### ERV316A3_17q21.33b ### chr17 rmsk gene 50320107 50323048 . + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2486"; model_cov "1418"; model_pct "27.1"; chr17 rmsk exon 50320107 50320167 2057 + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2486"; repClass "LTR"; repEnd "1566"; repFamily "ERVL"; repLeft "-3660"; repStart "1493"; chr17 rmsk exon 50320481 50320869 2057 + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2486"; repClass "LTR"; repEnd "1975"; repFamily "ERVL"; repLeft "-3251"; repStart "1567"; chr17 rmsk exon 50321182 50321621 2057 + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2486"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "-2803"; repStart "1976"; chr17 rmsk exon 50322305 50322603 1151 + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2486"; repClass "LTR"; repEnd "2745"; repFamily "ERVL"; repLeft "-2481"; repStart "2447"; chr17 rmsk exon 50322868 50323048 1151 + . gene_id "ERV316A3_17q21.33b"; transcript_id "ERV316A3_17q21.33b"; locus "ERV316A3_17q21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2486"; repClass "LTR"; repEnd "2938"; repFamily "ERVL"; repLeft "-2288"; repStart "2746"; ### ERV316A3_17q21.33c ### chr17 rmsk gene 50324431 50326228 . + . gene_id "ERV316A3_17q21.33c"; transcript_id "ERV316A3_17q21.33c"; locus "ERV316A3_17q21.33c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2487"; model_cov "790"; model_pct "15.1"; chr17 rmsk exon 50324431 50324648 755 + . gene_id "ERV316A3_17q21.33c"; transcript_id "ERV316A3_17q21.33c"; locus "ERV316A3_17q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2487"; repClass "LTR"; repEnd "2820"; repFamily "ERVL"; repLeft "-2406"; repStart "2495"; chr17 rmsk exon 50325515 50325756 432 + . gene_id "ERV316A3_17q21.33c"; transcript_id "ERV316A3_17q21.33c"; locus "ERV316A3_17q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2487"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-1735"; repStart "3261"; chr17 rmsk exon 50326002 50326228 846 + . gene_id "ERV316A3_17q21.33c"; transcript_id "ERV316A3_17q21.33c"; locus "ERV316A3_17q21.33c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2487"; repClass "LTR"; repEnd "3792"; repFamily "ERVL"; repLeft "-1434"; repStart "3557"; ### HERVW_17q21.33 ### chr17 rmsk gene 50399022 50405700 . - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0276"; model_cov "4206"; model_pct "48.8"; chr17 rmsk exon 50399022 50399723 5296 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "771"; repFamily "ERV1"; repLeft "1"; repStart "-9"; chr17 rmsk exon 50399727 50400014 2403 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8335"; repStart "-4"; chr17 rmsk exon 50400005 50400043 282 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr17 rmsk exon 50400037 50400656 5224 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5405"; repStart "-2607"; chr17 rmsk exon 50400636 50401110 10899 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "3287"; repStart "-4872"; chr17 rmsk exon 50401416 50402208 10899 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "2507"; repStart "-5340"; chr17 rmsk exon 50402509 50402585 10899 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "2506"; repFamily "ERV1"; repLeft "2430"; repStart "-6120"; chr17 rmsk exon 50402569 50403464 9237 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "1113"; repStart "-6610"; chr17 rmsk exon 50403767 50404089 9237 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "1112"; repFamily "ERV1"; repLeft "776"; repStart "-7514"; chr17 rmsk exon 50404254 50404966 5679 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "3"; repStart "-7917"; chr17 rmsk exon 50404971 50405700 5457 - . gene_id "HERVW_17q21.33"; transcript_id "HERVW_17q21.33"; locus "HERVW_17q21.33"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0276"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "2"; repStart "-2"; ### HARLEQUIN_17q21.33 ### chr17 rmsk gene 50412688 50420467 . - . gene_id "HARLEQUIN_17q21.33"; transcript_id "HARLEQUIN_17q21.33"; locus "HARLEQUIN_17q21.33"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0152"; model_cov "6895"; model_pct "100.0"; chr17 rmsk exon 50412688 50413150 3999 - . gene_id "HARLEQUIN_17q21.33"; transcript_id "HARLEQUIN_17q21.33"; locus "HARLEQUIN_17q21.33"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0152"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 50413151 50420005 47800 - . gene_id "HARLEQUIN_17q21.33"; transcript_id "HARLEQUIN_17q21.33"; locus "HARLEQUIN_17q21.33"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0152"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 50420006 50420467 4016 - . gene_id "HARLEQUIN_17q21.33"; transcript_id "HARLEQUIN_17q21.33"; locus "HARLEQUIN_17q21.33"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0152"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_17q21.33a ### chr17 rmsk gene 51302073 51304944 . + . gene_id "MER4_17q21.33a"; transcript_id "MER4_17q21.33a"; locus "MER4_17q21.33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0730"; model_cov "2094"; model_pct "31.7"; chr17 rmsk exon 51302073 51302524 3545 + . gene_id "MER4_17q21.33a"; transcript_id "MER4_17q21.33a"; locus "MER4_17q21.33a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0730"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr17 rmsk exon 51302528 51303690 5778 + . gene_id "MER4_17q21.33a"; transcript_id "MER4_17q21.33a"; locus "MER4_17q21.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0730"; repClass "LTR"; repEnd "1156"; repFamily "ERV1"; repLeft "-5442"; repStart "1"; chr17 rmsk exon 51303731 51303930 5778 + . gene_id "MER4_17q21.33a"; transcript_id "MER4_17q21.33a"; locus "MER4_17q21.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0730"; repClass "LTR"; repEnd "1382"; repFamily "ERV1"; repLeft "-5216"; repStart "1157"; chr17 rmsk exon 51304223 51304944 5778 + . gene_id "MER4_17q21.33a"; transcript_id "MER4_17q21.33a"; locus "MER4_17q21.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0730"; repClass "LTR"; repEnd "2097"; repFamily "ERV1"; repLeft "-4501"; repStart "1383"; ### MER4_17q21.33b ### chr17 rmsk gene 51312185 51318326 . + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0732"; model_cov "3697"; model_pct "56.0"; chr17 rmsk exon 51312185 51312509 4194 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3075"; repFamily "ERV1"; repLeft "-3523"; repStart "2737"; chr17 rmsk exon 51312813 51312863 4194 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3115"; repFamily "ERV1"; repLeft "-3483"; repStart "3076"; chr17 rmsk exon 51313159 51313249 4194 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3213"; repFamily "ERV1"; repLeft "-3385"; repStart "3116"; chr17 rmsk exon 51313556 51313753 4194 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3418"; repFamily "ERV1"; repLeft "-3180"; repStart "3214"; chr17 rmsk exon 51314054 51314317 4194 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3680"; repFamily "ERV1"; repLeft "-2918"; repStart "3419"; chr17 rmsk exon 51314317 51314444 16410 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "-2635"; repStart "3837"; chr17 rmsk exon 51314724 51314750 16410 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "3968"; repFamily "ERV1"; repLeft "-2630"; repStart "3964"; chr17 rmsk exon 51315038 51315146 16410 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "-2528"; repStart "3969"; chr17 rmsk exon 51315459 51317916 16410 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0732"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4071"; chr17 rmsk exon 51317918 51318326 3253 + . gene_id "MER4_17q21.33b"; transcript_id "MER4_17q21.33b"; locus "MER4_17q21.33b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0732"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "-44"; repStart "1"; ### MER61_17q22a ### chr17 rmsk gene 52114950 52116699 . + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0341"; model_cov "673"; model_pct "12.9"; chr17 rmsk exon 52114950 52115347 2666 + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0341"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 52115348 52115428 279 + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0341"; repClass "LTR"; repEnd "-1797"; repFamily "ERV1"; repLeft "-7014"; repStart "-1872"; chr17 rmsk exon 52115633 52115812 1351 + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0341"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-4871"; repStart "181"; chr17 rmsk exon 52116106 52116420 1351 + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0341"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "-4716"; repStart "347"; chr17 rmsk exon 52116419 52116699 1336 + . gene_id "MER61_17q22a"; transcript_id "MER61_17q22a"; locus "MER61_17q22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0341"; repClass "LTR"; repEnd "4575"; repFamily "ERV1"; repLeft "-642"; repStart "4296"; ### LTR25_17q22 ### chr17 rmsk gene 52116702 52120550 . + . gene_id "LTR25_17q22"; transcript_id "LTR25_17q22"; locus "LTR25_17q22"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0120"; model_cov "4280"; model_pct "59.5"; chr17 rmsk exon 52116702 52116927 1549 + . gene_id "LTR25_17q22"; transcript_id "LTR25_17q22"; locus "LTR25_17q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0120"; repClass "LTR"; repEnd "2209"; repFamily "ERV1"; repLeft "-4979"; repStart "1983"; chr17 rmsk exon 52116925 52120405 11434 + . gene_id "LTR25_17q22"; transcript_id "LTR25_17q22"; locus "LTR25_17q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0120"; repClass "LTR"; repEnd "7126"; repFamily "ERV1"; repLeft "-62"; repStart "3128"; chr17 rmsk exon 52120481 52120550 1527 + . gene_id "LTR25_17q22"; transcript_id "LTR25_17q22"; locus "LTR25_17q22"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0120"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "7131"; ### MER4B_17q22 ### chr17 rmsk gene 52254627 52257546 . + . gene_id "MER4B_17q22"; transcript_id "MER4B_17q22"; locus "MER4B_17q22"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0427"; model_cov "1560"; model_pct "23.1"; chr17 rmsk exon 52254627 52254719 560 + . gene_id "MER4B_17q22"; transcript_id "MER4B_17q22"; locus "MER4B_17q22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0427"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-2076"; repStart "4590"; chr17 rmsk exon 52255803 52257546 4088 + . gene_id "MER4B_17q22"; transcript_id "MER4B_17q22"; locus "MER4B_17q22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0427"; repClass "LTR"; repEnd "6306"; repFamily "ERV1"; repLeft "-452"; repStart "4838"; ### ERV316A3_17q22a ### chr17 rmsk gene 52264254 52266117 . - . gene_id "ERV316A3_17q22a"; transcript_id "ERV316A3_17q22a"; locus "ERV316A3_17q22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2489"; model_cov "1376"; model_pct "26.3"; chr17 rmsk exon 52264254 52264791 1760 - . gene_id "ERV316A3_17q22a"; transcript_id "ERV316A3_17q22a"; locus "ERV316A3_17q22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2489"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "1781"; repStart "-2892"; chr17 rmsk exon 52264793 52265540 1058 - . gene_id "ERV316A3_17q22a"; transcript_id "ERV316A3_17q22a"; locus "ERV316A3_17q22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2489"; repClass "LTR"; repEnd "1030"; repFamily "ERVL"; repLeft "207"; repStart "-4196"; chr17 rmsk exon 52265763 52266117 553 - . gene_id "ERV316A3_17q22a"; transcript_id "ERV316A3_17q22a"; locus "ERV316A3_17q22a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2489"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "37"; repStart "-2"; ### ERVLB4_17q22a ### chr17 rmsk gene 52446017 52448372 . - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1586"; model_cov "1309"; model_pct "22.9"; chr17 rmsk exon 52446017 52446152 303 - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1586"; repClass "LTR"; repEnd "4455"; repFamily "ERVL"; repLeft "4313"; repStart "-1259"; chr17 rmsk exon 52446172 52446459 390 - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1586"; repClass "LTR"; repEnd "3980"; repFamily "ERVL"; repLeft "3670"; repStart "-1734"; chr17 rmsk exon 52447176 52447354 449 - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1586"; repClass "LTR"; repEnd "3226"; repFamily "ERVL"; repLeft "3042"; repStart "-2488"; chr17 rmsk exon 52447527 52448174 976 - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1586"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "2036"; repStart "-3027"; chr17 rmsk exon 52448349 52448372 976 - . gene_id "ERVLB4_17q22a"; transcript_id "ERVLB4_17q22a"; locus "ERVLB4_17q22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1586"; repClass "LTR"; repEnd "2035"; repFamily "ERVL"; repLeft "2013"; repStart "-3679"; ### ERVLE_17q22a ### chr17 rmsk gene 52469417 52475168 . - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3278"; model_cov "3943"; model_pct "69.6"; chr17 rmsk exon 52469417 52469971 1840 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr17 rmsk exon 52469989 52471182 3832 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "5664"; repFamily "ERVL"; repLeft "4390"; repStart "-3"; chr17 rmsk exon 52471174 52472315 4023 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "2673"; repFamily "ERVL"; repLeft "1469"; repStart "-2994"; chr17 rmsk exon 52472803 52474228 5175 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "34"; repStart "-4206"; chr17 rmsk exon 52474850 52474888 250 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "2"; repStart "-5627"; chr17 rmsk exon 52474890 52475023 511 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "494"; repStart "0"; chr17 rmsk exon 52474991 52475168 560 - . gene_id "ERVLE_17q22a"; transcript_id "ERVLE_17q22a"; locus "ERVLE_17q22a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3278"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "265"; repStart "-182"; ### HERV9_17q22a ### chr17 rmsk gene 52573719 52581192 . + . gene_id "HERV9_17q22a"; transcript_id "HERV9_17q22a"; locus "HERV9_17q22a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0170"; model_cov "7101"; model_pct "84.2"; chr17 rmsk exon 52573719 52579464 41020 + . gene_id "HERV9_17q22a"; transcript_id "HERV9_17q22a"; locus "HERV9_17q22a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0170"; repClass "LTR"; repEnd "5874"; repFamily "ERV1"; repLeft "-2562"; repStart "60"; chr17 rmsk exon 52579459 52580741 9331 + . gene_id "HERV9_17q22a"; transcript_id "HERV9_17q22a"; locus "HERV9_17q22a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0170"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7149"; chr17 rmsk exon 52580742 52581192 3156 + . gene_id "HERV9_17q22a"; transcript_id "HERV9_17q22a"; locus "HERV9_17q22a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0170"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVE_17q22 ### chr17 rmsk gene 52594880 52598607 . + . gene_id "HERVE_17q22"; transcript_id "HERVE_17q22"; locus "HERVE_17q22"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0151"; model_cov "3732"; model_pct "47.8"; chr17 rmsk exon 52594880 52598607 22090 + . gene_id "HERVE_17q22"; transcript_id "HERVE_17q22"; locus "HERVE_17q22"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0151"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "-2426"; repStart "1655"; ### ERVLE_17q22b ### chr17 rmsk gene 52704925 52705887 . - . gene_id "ERVLE_17q22b"; transcript_id "ERVLE_17q22b"; locus "ERVLE_17q22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3279"; model_cov "994"; model_pct "17.5"; chr17 rmsk exon 52704925 52705887 1465 - . gene_id "ERVLE_17q22b"; transcript_id "ERVLE_17q22b"; locus "ERVLE_17q22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3279"; repClass "LTR"; repEnd "2934"; repFamily "ERVL"; repLeft "1940"; repStart "-2733"; ### MER61_17q22b ### chr17 rmsk gene 52824467 52828917 . - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0342"; model_cov "4315"; model_pct "82.7"; chr17 rmsk exon 52824467 52824791 1770 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0342"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr17 rmsk exon 52824793 52825347 15580 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "3996"; repFamily "ERV1"; repLeft "3461"; repStart "-1221"; chr17 rmsk exon 52825647 52827619 15580 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "2615"; repFamily "ERV1"; repLeft "-546"; repStart "-2602"; chr17 rmsk exon 52827627 52827673 288 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "1366"; repFamily "ERV1"; repLeft "1320"; repStart "-3851"; chr17 rmsk exon 52827704 52827779 390 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "631"; repStart "-4510"; chr17 rmsk exon 52827863 52827899 1593 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "461"; repStart "-4718"; chr17 rmsk exon 52828205 52828582 1593 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0342"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "-4757"; chr17 rmsk exon 52828583 52828917 1574 - . gene_id "MER61_17q22b"; transcript_id "MER61_17q22b"; locus "MER61_17q22b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0342"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_17q22c ### chr17 rmsk gene 52921799 52924634 . - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0343"; model_cov "2224"; model_pct "42.6"; chr17 rmsk exon 52921799 52922132 2326 - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0343"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "66"; repStart "-29"; chr17 rmsk exon 52922435 52922500 2326 - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0343"; repClass "LTR"; repEnd "65"; repFamily "ERV1"; repLeft "1"; repStart "-362"; chr17 rmsk exon 52922501 52923092 2091 - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0343"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4577"; repStart "0"; chr17 rmsk exon 52923083 52923343 1820 - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0343"; repClass "LTR"; repEnd "4251"; repFamily "ERV1"; repLeft "3989"; repStart "-966"; chr17 rmsk exon 52923339 52924634 8266 - . gene_id "MER61_17q22c"; transcript_id "MER61_17q22c"; locus "MER61_17q22c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0343"; repClass "LTR"; repEnd "2757"; repFamily "ERV1"; repLeft "1435"; repStart "-2460"; ### MER41_17q22a ### chr17 rmsk gene 52972371 52974077 . - . gene_id "MER41_17q22a"; transcript_id "MER41_17q22a"; locus "MER41_17q22a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0483"; model_cov "1183"; model_pct "19.9"; chr17 rmsk exon 52972371 52972926 4392 - . gene_id "MER41_17q22a"; transcript_id "MER41_17q22a"; locus "MER41_17q22a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0483"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 52972927 52973140 1605 - . gene_id "MER41_17q22a"; transcript_id "MER41_17q22a"; locus "MER41_17q22a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0483"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5729"; repStart "-2"; chr17 rmsk exon 52973138 52974077 6651 - . gene_id "MER41_17q22a"; transcript_id "MER41_17q22a"; locus "MER41_17q22a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0483"; repClass "LTR"; repEnd "5481"; repFamily "ERV1"; repLeft "4513"; repStart "-465"; ### ERVLB4_17q22b ### chr17 rmsk gene 53246246 53249867 . - . gene_id "ERVLB4_17q22b"; transcript_id "ERVLB4_17q22b"; locus "ERVLB4_17q22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1587"; model_cov "995"; model_pct "17.4"; chr17 rmsk exon 53246246 53246502 351 - . gene_id "ERVLB4_17q22b"; transcript_id "ERVLB4_17q22b"; locus "ERVLB4_17q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1587"; repClass "LTR"; repEnd "3804"; repFamily "ERVL"; repLeft "3536"; repStart "-1910"; chr17 rmsk exon 53247806 53248109 768 - . gene_id "ERVLB4_17q22b"; transcript_id "ERVLB4_17q22b"; locus "ERVLB4_17q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1587"; repClass "LTR"; repEnd "2605"; repFamily "ERVL"; repLeft "2286"; repStart "-3109"; chr17 rmsk exon 53248773 53249066 446 - . gene_id "ERVLB4_17q22b"; transcript_id "ERVLB4_17q22b"; locus "ERVLB4_17q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1587"; repClass "LTR"; repEnd "1839"; repFamily "ERVL"; repLeft "1532"; repStart "-3875"; chr17 rmsk exon 53249766 53249867 374 - . gene_id "ERVLB4_17q22b"; transcript_id "ERVLB4_17q22b"; locus "ERVLB4_17q22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1587"; repClass "LTR"; repEnd "1210"; repFamily "ERVL"; repLeft "1109"; repStart "-4504"; ### HUERSP3_17q22 ### chr17 rmsk gene 53628816 53633567 . + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0176"; model_cov "4115"; model_pct "46.1"; chr17 rmsk exon 53628816 53630746 7152 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "-5642"; repStart "1047"; chr17 rmsk exon 53630739 53630868 647 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4541"; chr17 rmsk exon 53630870 53631517 4208 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "5569"; repFamily "ERV1"; repLeft "-3350"; repStart "4901"; chr17 rmsk exon 53631510 53632248 4124 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6162"; chr17 rmsk exon 53632260 53632369 476 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "-1937"; repStart "6874"; chr17 rmsk exon 53633166 53633426 1125 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr17 rmsk exon 53633427 53633567 865 + . gene_id "HUERSP3_17q22"; transcript_id "HUERSP3_17q22"; locus "HUERSP3_17q22"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0176"; repClass "LTR"; repEnd "150"; repFamily "ERV1"; repLeft "-516"; repStart "1"; ### LTR57_17q22 ### chr17 rmsk gene 53719200 53723040 . - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0159"; model_cov "2778"; model_pct "52.0"; chr17 rmsk exon 53719200 53719600 2266 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr17 rmsk exon 53719601 53720506 5376 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4437"; repStart "0"; chr17 rmsk exon 53720811 53720862 5376 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4385"; repStart "-907"; chr17 rmsk exon 53720859 53721050 1217 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1989"; repStart "-3163"; chr17 rmsk exon 53721052 53722641 8136 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "1631"; repFamily "ERVL"; repLeft "1"; repStart "-3712"; chr17 rmsk exon 53722642 53723040 2243 - . gene_id "LTR57_17q22"; transcript_id "LTR57_17q22"; locus "LTR57_17q22"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0159"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_17q22b ### chr17 rmsk gene 53839531 53841476 . - . gene_id "MER41_17q22b"; transcript_id "MER41_17q22b"; locus "MER41_17q22b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0484"; model_cov "1618"; model_pct "27.2"; chr17 rmsk exon 53839531 53839637 436 - . gene_id "MER41_17q22b"; transcript_id "MER41_17q22b"; locus "MER41_17q22b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0484"; repClass "LTR"; repEnd "4951"; repFamily "ERV1"; repLeft "4868"; repStart "-995"; chr17 rmsk exon 53839617 53840163 8227 - . gene_id "MER41_17q22b"; transcript_id "MER41_17q22b"; locus "MER41_17q22b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0484"; repClass "LTR"; repEnd "5229"; repFamily "ERV1"; repLeft "4675"; repStart "-717"; chr17 rmsk exon 53840472 53841476 8227 - . gene_id "MER41_17q22b"; transcript_id "MER41_17q22b"; locus "MER41_17q22b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0484"; repClass "LTR"; repEnd "4674"; repFamily "ERV1"; repLeft "3693"; repStart "-1272"; ### MER61_17q22d ### chr17 rmsk gene 53843030 53844758 . - . gene_id "MER61_17q22d"; transcript_id "MER61_17q22d"; locus "MER61_17q22d"; category "internal"; intModel "MER61-int"; locid "MER61-int_0344"; model_cov "1853"; model_pct "35.5"; chr17 rmsk exon 53843030 53844491 5883 - . gene_id "MER61_17q22d"; transcript_id "MER61_17q22d"; locus "MER61_17q22d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0344"; repClass "LTR"; repEnd "2233"; repFamily "ERV1"; repLeft "861"; repStart "-2984"; chr17 rmsk exon 53844483 53844758 414 - . gene_id "MER61_17q22d"; transcript_id "MER61_17q22d"; locus "MER61_17q22d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0344"; repClass "LTR"; repEnd "-1450"; repFamily "ERV1"; repLeft "-1931"; repStart "-6667"; ### ERV316A3_17q22b ### chr17 rmsk gene 54277738 54279107 . - . gene_id "ERV316A3_17q22b"; transcript_id "ERV316A3_17q22b"; locus "ERV316A3_17q22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2490"; model_cov "755"; model_pct "14.4"; chr17 rmsk exon 54277738 54278205 699 - . gene_id "ERV316A3_17q22b"; transcript_id "ERV316A3_17q22b"; locus "ERV316A3_17q22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2490"; repClass "LTR"; repEnd "728"; repFamily "ERVL"; repLeft "279"; repStart "-4498"; chr17 rmsk exon 54278389 54278688 658 - . gene_id "ERV316A3_17q22b"; transcript_id "ERV316A3_17q22b"; locus "ERV316A3_17q22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2490"; repClass "LTR"; repEnd "539"; repFamily "ERVL"; repLeft "233"; repStart "-4687"; chr17 rmsk exon 54278707 54279107 749 - . gene_id "ERV316A3_17q22b"; transcript_id "ERV316A3_17q22b"; locus "ERV316A3_17q22b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2490"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "1"; repStart "-20"; ### HERV9_17q22b ### chr17 rmsk gene 54286175 54293612 . + . gene_id "HERV9_17q22b"; transcript_id "HERV9_17q22b"; locus "HERV9_17q22b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0171"; model_cov "6642"; model_pct "78.7"; chr17 rmsk exon 54286175 54286643 2689 + . gene_id "HERV9_17q22b"; transcript_id "HERV9_17q22b"; locus "HERV9_17q22b"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0171"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-1"; repStart "18"; chr17 rmsk exon 54286665 54289281 48495 + . gene_id "HERV9_17q22b"; transcript_id "HERV9_17q22b"; locus "HERV9_17q22b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0171"; repClass "LTR"; repEnd "2616"; repFamily "ERV1"; repLeft "-5820"; repStart "55"; chr17 rmsk exon 54289564 54293612 48495 + . gene_id "HERV9_17q22b"; transcript_id "HERV9_17q22b"; locus "HERV9_17q22b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0171"; repClass "LTR"; repEnd "6698"; repFamily "ERV1"; repLeft "-1738"; repStart "2617"; ### MER41_17q22c ### chr17 rmsk gene 54314459 54316357 . - . gene_id "MER41_17q22c"; transcript_id "MER41_17q22c"; locus "MER41_17q22c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0486"; model_cov "1348"; model_pct "22.7"; chr17 rmsk exon 54314459 54315036 3875 - . gene_id "MER41_17q22c"; transcript_id "MER41_17q22c"; locus "MER41_17q22c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0486"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 54315037 54316357 8041 - . gene_id "MER41_17q22c"; transcript_id "MER41_17q22c"; locus "MER41_17q22c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0486"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4596"; repStart "-2"; ### MER41_17q22d ### chr17 rmsk gene 54322823 54326728 . - . gene_id "MER41_17q22d"; transcript_id "MER41_17q22d"; locus "MER41_17q22d"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0487"; model_cov "4022"; model_pct "67.6"; chr17 rmsk exon 54322823 54325668 5290 - . gene_id "MER41_17q22d"; transcript_id "MER41_17q22d"; locus "MER41_17q22d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0487"; repClass "LTR"; repEnd "2099"; repFamily "ERV1"; repLeft "-1869"; repStart "-3847"; chr17 rmsk exon 54325706 54325758 283 - . gene_id "MER41_17q22d"; transcript_id "MER41_17q22d"; locus "MER41_17q22d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0487"; repClass "LTR"; repEnd "55"; repFamily "ERV1"; repLeft "1"; repStart "-5891"; chr17 rmsk exon 54325759 54325873 989 - . gene_id "MER41_17q22d"; transcript_id "MER41_17q22d"; locus "MER41_17q22d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0487"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "441"; repStart "0"; chr17 rmsk exon 54326264 54326728 2916 - . gene_id "MER41_17q22d"; transcript_id "MER41_17q22d"; locus "MER41_17q22d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0487"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-69"; repStart "-114"; ### HERV9_17q22c ### chr17 rmsk gene 54327522 54332778 . + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0173"; model_cov "4097"; model_pct "48.6"; chr17 rmsk exon 54327522 54327712 1368 + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0173"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-1"; repStart "328"; chr17 rmsk exon 54328564 54331148 18999 + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0173"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-2859"; repStart "2943"; chr17 rmsk exon 54331145 54331204 305 + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0173"; repClass "LTR"; repEnd "6947"; repFamily "ERV1"; repLeft "-1489"; repStart "6892"; chr17 rmsk exon 54331197 54332400 5308 + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0173"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7028"; chr17 rmsk exon 54332401 54332778 2797 + . gene_id "HERV9_17q22c"; transcript_id "HERV9_17q22c"; locus "HERV9_17q22c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0173"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "-115"; repStart "1"; ### HERVH_17q22a ### chr17 rmsk gene 54411779 54416802 . + . gene_id "HERVH_17q22a"; transcript_id "HERVH_17q22a"; locus "HERVH_17q22a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1110"; model_cov "4663"; model_pct "60.5"; chr17 rmsk exon 54411779 54415851 13468 + . gene_id "HERVH_17q22a"; transcript_id "HERVH_17q22a"; locus "HERVH_17q22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1110"; repClass "LTR"; repEnd "6021"; repFamily "ERV1"; repLeft "-1692"; repStart "1914"; chr17 rmsk exon 54415840 54416395 3304 + . gene_id "HERVH_17q22a"; transcript_id "HERVH_17q22a"; locus "HERVH_17q22a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1110"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr17 rmsk exon 54416396 54416802 2278 + . gene_id "HERVH_17q22a"; transcript_id "HERVH_17q22a"; locus "HERVH_17q22a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1110"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_17q22a ### chr17 rmsk gene 54593233 54596389 . - . gene_id "HERVL_17q22a"; transcript_id "HERVL_17q22a"; locus "HERVL_17q22a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1155"; model_cov "2302"; model_pct "40.7"; chr17 rmsk exon 54593233 54595533 17399 - . gene_id "HERVL_17q22a"; transcript_id "HERVL_17q22a"; locus "HERVL_17q22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1155"; repClass "LTR"; repEnd "2303"; repFamily "ERVL"; repLeft "1"; repStart "-3351"; chr17 rmsk exon 54595725 54595760 265 - . gene_id "HERVL_17q22a"; transcript_id "HERVL_17q22a"; locus "HERVL_17q22a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1155"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "396"; repStart "-13"; chr17 rmsk exon 54595993 54596389 3040 - . gene_id "HERVL_17q22a"; transcript_id "HERVL_17q22a"; locus "HERVL_17q22a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1155"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### HERVL_17q22b ### chr17 rmsk gene 54815524 54818434 . + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1156"; model_cov "1810"; model_pct "32.0"; chr17 rmsk exon 54815524 54815938 3122 + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1156"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; chr17 rmsk exon 54816007 54816396 3105 + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1156"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-5264"; repStart "1"; chr17 rmsk exon 54816378 54817798 10815 + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1156"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4233"; chr17 rmsk exon 54817799 54818188 3032 + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1156"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr17 rmsk exon 54818371 54818434 415 + . gene_id "HERVL_17q22b"; transcript_id "HERVL_17q22b"; locus "HERVL_17q22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1156"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "384"; ### HERVW_17q22 ### chr17 rmsk gene 55011525 55018498 . - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0277"; model_cov "6230"; model_pct "72.2"; chr17 rmsk exon 55011525 55011840 2452 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr17 rmsk exon 55011841 55012132 2397 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr17 rmsk exon 55012123 55012161 286 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr17 rmsk exon 55012155 55012186 291 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5988"; repStart "-2607"; chr17 rmsk exon 55012203 55017995 47395 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "1"; repStart "-2755"; chr17 rmsk exon 55017996 55018498 3681 - . gene_id "HERVW_17q22"; transcript_id "HERVW_17q22"; locus "HERVW_17q22"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0277"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVH_17q22b ### chr17 rmsk gene 55467773 55476512 . + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1111"; model_cov "6186"; model_pct "80.2"; chr17 rmsk exon 55467773 55468176 2150 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 55468177 55468582 972 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr17 rmsk exon 55468671 55469697 16145 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "1807"; repFamily "ERV1"; repLeft "-5906"; repStart "801"; chr17 rmsk exon 55470002 55472590 16145 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "4592"; repFamily "ERV1"; repLeft "-3121"; repStart "1753"; chr17 rmsk exon 55472897 55473789 4895 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "5140"; repFamily "ERV1"; repLeft "-2573"; repStart "4254"; chr17 rmsk exon 55475099 55475548 2572 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "6043"; repFamily "ERV1"; repLeft "-1670"; repStart "5589"; chr17 rmsk exon 55475519 55476078 3807 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr17 rmsk exon 55476079 55476512 2395 + . gene_id "HERVH_17q22b"; transcript_id "HERVH_17q22b"; locus "HERVH_17q22b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1111"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVEA_17q22 ### chr17 rmsk gene 55473790 55475092 . + . gene_id "HERVEA_17q22"; transcript_id "HERVEA_17q22"; locus "HERVEA_17q22"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0079"; model_cov "859"; model_pct "10.9"; chr17 rmsk exon 55473790 55474233 3603 + . gene_id "HERVEA_17q22"; transcript_id "HERVEA_17q22"; locus "HERVEA_17q22"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0079"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 55474234 55475092 7105 + . gene_id "HERVEA_17q22"; transcript_id "HERVEA_17q22"; locus "HERVEA_17q22"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0079"; repClass "LTR"; repEnd "860"; repFamily "ERV1"; repLeft "-6987"; repStart "1"; ### ERV316A3_17q22c ### chr17 rmsk gene 55884008 55886722 . + . gene_id "ERV316A3_17q22c"; transcript_id "ERV316A3_17q22c"; locus "ERV316A3_17q22c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2491"; model_cov "1321"; model_pct "25.3"; chr17 rmsk exon 55884008 55884228 883 + . gene_id "ERV316A3_17q22c"; transcript_id "ERV316A3_17q22c"; locus "ERV316A3_17q22c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2491"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "0"; repStart "253"; chr17 rmsk exon 55884325 55884741 950 + . gene_id "ERV316A3_17q22c"; transcript_id "ERV316A3_17q22c"; locus "ERV316A3_17q22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2491"; repClass "LTR"; repEnd "4124"; repFamily "ERVL"; repLeft "-1102"; repStart "3697"; chr17 rmsk exon 55885362 55886237 1604 + . gene_id "ERV316A3_17q22c"; transcript_id "ERV316A3_17q22c"; locus "ERV316A3_17q22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2491"; repClass "LTR"; repEnd "5066"; repFamily "ERVL"; repLeft "-160"; repStart "4172"; chr17 rmsk exon 55886269 55886722 1447 + . gene_id "ERV316A3_17q22c"; transcript_id "ERV316A3_17q22c"; locus "ERV316A3_17q22c"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2491"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-8"; repStart "7"; ### ERVL_17q22 ### chr17 rmsk gene 56559636 56567714 . + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0417"; model_cov "5025"; model_pct "87.3"; chr17 rmsk exon 56559636 56560106 2676 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-60"; repStart "3"; chr17 rmsk exon 56560314 56560537 1307 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "274"; repFamily "ERVL"; repLeft "-5483"; repStart "47"; chr17 rmsk exon 56561049 56561772 27586 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "989"; repFamily "ERVL"; repLeft "-4768"; repStart "239"; chr17 rmsk exon 56563287 56566057 27586 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "3760"; repFamily "ERVL"; repLeft "-1997"; repStart "990"; chr17 rmsk exon 56566141 56567417 27586 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "5039"; repFamily "ERVL"; repLeft "-718"; repStart "3761"; chr17 rmsk exon 56567418 56567714 1175 + . gene_id "ERVL_17q22"; transcript_id "ERVL_17q22"; locus "ERVL_17q22"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0417"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "208"; ### MER4_17q22 ### chr17 rmsk gene 56925170 56931849 . + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0733"; model_cov "6898"; model_pct "100.0"; chr17 rmsk exon 56925170 56925579 3032 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0733"; repClass "LTR"; repEnd "432"; repFamily "ERV1"; repLeft "-40"; repStart "1"; chr17 rmsk exon 56925889 56925937 3032 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0733"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "433"; chr17 rmsk exon 56925941 56926379 3009 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-6157"; repStart "1"; chr17 rmsk exon 56926376 56926439 275 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "752"; repFamily "ERV1"; repLeft "-5846"; repStart "687"; chr17 rmsk exon 56926505 56927659 12406 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "2212"; repFamily "ERV1"; repLeft "-4386"; repStart "682"; chr17 rmsk exon 56927957 56928002 12406 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-3613"; repStart "2957"; chr17 rmsk exon 56928302 56928553 12406 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "3354"; repFamily "ERV1"; repLeft "-3244"; repStart "2986"; chr17 rmsk exon 56928774 56928980 12406 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "3661"; repFamily "ERV1"; repLeft "-2937"; repStart "3355"; chr17 rmsk exon 56929278 56931849 14444 + . gene_id "MER4_17q22"; transcript_id "MER4_17q22"; locus "MER4_17q22"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0733"; repClass "LTR"; repEnd "6240"; repFamily "ERV1"; repLeft "-358"; repStart "2079"; ### PABLA_17q22 ### chr17 rmsk gene 56966042 56973150 . + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0134"; model_cov "4680"; model_pct "93.3"; chr17 rmsk exon 56966042 56966419 3087 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "284"; chr17 rmsk exon 56966420 56967011 6138 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-4405"; repStart "1"; chr17 rmsk exon 56967319 56967440 6138 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "721"; repFamily "ERV1"; repLeft "-4294"; repStart "611"; chr17 rmsk exon 56967734 56967904 6138 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "895"; repFamily "ERV1"; repLeft "-4120"; repStart "722"; chr17 rmsk exon 56967898 56968400 3948 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "1653"; repFamily "ERV1"; repLeft "-3362"; repStart "1150"; chr17 rmsk exon 56968695 56968879 1298 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "2050"; repFamily "ERV1"; repLeft "-2965"; repStart "1862"; chr17 rmsk exon 56969069 56969923 5683 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "3166"; repFamily "ERV1"; repLeft "-1849"; repStart "1916"; chr17 rmsk exon 56970114 56970641 7452 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "3694"; repFamily "ERV1"; repLeft "-1321"; repStart "3166"; chr17 rmsk exon 56970943 56971574 7452 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "4428"; repFamily "ERV1"; repLeft "-587"; repStart "3695"; chr17 rmsk exon 56971873 56972503 5738 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "4429"; chr17 rmsk exon 56972504 56973150 4949 + . gene_id "PABLA_17q22"; transcript_id "PABLA_17q22"; locus "PABLA_17q22"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0134"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_17q22c ### chr17 rmsk gene 57008581 57011984 . + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3284"; model_cov "2196"; model_pct "38.8"; chr17 rmsk exon 57008581 57008928 4211 + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3284"; repClass "LTR"; repEnd "3827"; repFamily "ERVL"; repLeft "-1840"; repStart "3468"; chr17 rmsk exon 57009221 57010605 5175 + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3284"; repClass "LTR"; repEnd "5338"; repFamily "ERVL"; repLeft "-329"; repStart "3828"; chr17 rmsk exon 57010915 57010991 5175 + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3284"; repClass "LTR"; repEnd "5406"; repFamily "ERVL"; repLeft "-261"; repStart "5339"; chr17 rmsk exon 57011251 57011508 5175 + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3284"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5407"; chr17 rmsk exon 57011509 57011984 1262 + . gene_id "ERVLE_17q22c"; transcript_id "ERVLE_17q22c"; locus "ERVLE_17q22c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3284"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "-62"; repStart "1"; ### MER41_17q22e ### chr17 rmsk gene 57023979 57028606 . - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0488"; model_cov "5113"; model_pct "86.0"; chr17 rmsk exon 57023979 57024470 3416 - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0488"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "2"; repStart "-76"; chr17 rmsk exon 57024490 57025199 12491 - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0488"; repClass "LTR"; repEnd "5928"; repFamily "ERV1"; repLeft "5191"; repStart "-18"; chr17 rmsk exon 57025497 57027089 12491 - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0488"; repClass "LTR"; repEnd "5190"; repFamily "ERV1"; repLeft "2780"; repStart "-756"; chr17 rmsk exon 57027407 57028427 10776 - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0488"; repClass "LTR"; repEnd "2906"; repFamily "ERV1"; repLeft "940"; repStart "-3040"; chr17 rmsk exon 57028429 57028606 1330 - . gene_id "MER41_17q22e"; transcript_id "MER41_17q22e"; locus "MER41_17q22e"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0488"; repClass "LTR"; repEnd "177"; repFamily "ERV1"; repLeft "1"; repStart "-457"; ### ERV316A3_17q22d ### chr17 rmsk gene 57817082 57819235 . + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2492"; model_cov "1066"; model_pct "20.4"; chr17 rmsk exon 57817082 57817328 355 + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2492"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-167"; repStart "9"; chr17 rmsk exon 57817339 57817660 1059 + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2492"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2768"; chr17 rmsk exon 57818024 57818390 842 + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2492"; repClass "LTR"; repEnd "3477"; repFamily "ERVL"; repLeft "-1749"; repStart "3098"; chr17 rmsk exon 57818386 57818753 1156 + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2492"; repClass "LTR"; repEnd "5153"; repFamily "ERVL"; repLeft "-73"; repStart "4783"; chr17 rmsk exon 57818849 57819235 1224 + . gene_id "ERV316A3_17q22d"; transcript_id "ERV316A3_17q22d"; locus "ERV316A3_17q22d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2492"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "22"; ### ERVLB4_17q22c ### chr17 rmsk gene 58095792 58097754 . - . gene_id "ERVLB4_17q22c"; transcript_id "ERVLB4_17q22c"; locus "ERVLB4_17q22c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1589"; model_cov "1597"; model_pct "27.9"; chr17 rmsk exon 58095792 58096222 1539 - . gene_id "ERVLB4_17q22c"; transcript_id "ERVLB4_17q22c"; locus "ERVLB4_17q22c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1589"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr17 rmsk exon 58096223 58097754 7551 - . gene_id "ERVLB4_17q22c"; transcript_id "ERVLB4_17q22c"; locus "ERVLB4_17q22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1589"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "4116"; repStart "-1"; ### ERV316A3_17q23.1 ### chr17 rmsk gene 59503491 59506610 . - . gene_id "ERV316A3_17q23.1"; transcript_id "ERV316A3_17q23.1"; locus "ERV316A3_17q23.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2493"; model_cov "2117"; model_pct "40.5"; chr17 rmsk exon 59503491 59503815 1684 - . gene_id "ERV316A3_17q23.1"; transcript_id "ERV316A3_17q23.1"; locus "ERV316A3_17q23.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2493"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "2"; repStart "-86"; chr17 rmsk exon 59503816 59504375 2467 - . gene_id "ERV316A3_17q23.1"; transcript_id "ERV316A3_17q23.1"; locus "ERV316A3_17q23.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2493"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4648"; repStart "0"; chr17 rmsk exon 59504772 59506327 4733 - . gene_id "ERV316A3_17q23.1"; transcript_id "ERV316A3_17q23.1"; locus "ERV316A3_17q23.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2493"; repClass "LTR"; repEnd "1574"; repFamily "ERVL"; repLeft "35"; repStart "-3652"; chr17 rmsk exon 59506329 59506610 1318 - . gene_id "ERV316A3_17q23.1"; transcript_id "ERV316A3_17q23.1"; locus "ERV316A3_17q23.1"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2493"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "118"; repStart "-15"; ### HERVL18_17q23.2 ### chr17 rmsk gene 60558502 60561264 . - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0135"; model_cov "1339"; model_pct "22.1"; chr17 rmsk exon 60558502 60559082 3503 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr17 rmsk exon 60559286 60559584 1891 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "3190"; repStart "-2556"; chr17 rmsk exon 60559731 60559841 375 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "2279"; repFamily "ERVL"; repLeft "2119"; repStart "-3768"; chr17 rmsk exon 60559841 60560195 1128 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1388"; repStart "-4237"; chr17 rmsk exon 60560224 60560394 895 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "494"; repStart "-5381"; chr17 rmsk exon 60560380 60560666 1614 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "303"; repFamily "ERVL"; repLeft "19"; repStart "-5744"; chr17 rmsk exon 60560688 60561264 3422 - . gene_id "HERVL18_17q23.2"; transcript_id "HERVL18_17q23.2"; locus "HERVL18_17q23.2"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0135"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL40_17q23.2 ### chr17 rmsk gene 60971017 60972258 . - . gene_id "HERVL40_17q23.2"; transcript_id "HERVL40_17q23.2"; locus "HERVL40_17q23.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0398"; model_cov "928"; model_pct "16.8"; chr17 rmsk exon 60971017 60971281 907 - . gene_id "HERVL40_17q23.2"; transcript_id "HERVL40_17q23.2"; locus "HERVL40_17q23.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0398"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "3205"; repStart "-2064"; chr17 rmsk exon 60971488 60971958 1382 - . gene_id "HERVL40_17q23.2"; transcript_id "HERVL40_17q23.2"; locus "HERVL40_17q23.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0398"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "2662"; repStart "-2363"; chr17 rmsk exon 60972110 60972258 318 - . gene_id "HERVL40_17q23.2"; transcript_id "HERVL40_17q23.2"; locus "HERVL40_17q23.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0398"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1455"; repStart "-3913"; ### ERV316A3_17q23.2a ### chr17 rmsk gene 62178517 62185522 . - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2494"; model_cov "3225"; model_pct "61.7"; chr17 rmsk exon 62178517 62178898 1295 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr17 rmsk exon 62178899 62179274 4489 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4878"; repStart "0"; chr17 rmsk exon 62179577 62180262 4489 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "4877"; repFamily "ERVL"; repLeft "4179"; repStart "-349"; chr17 rmsk exon 62180576 62180828 4489 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "4178"; repFamily "ERVL"; repLeft "3925"; repStart "-1048"; chr17 rmsk exon 62181213 62181704 4489 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "3924"; repFamily "ERVL"; repLeft "3417"; repStart "-1302"; chr17 rmsk exon 62182420 62183011 2720 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "2994"; repFamily "ERVL"; repLeft "2390"; repStart "-2232"; chr17 rmsk exon 62183324 62183696 2720 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "2389"; repFamily "ERVL"; repLeft "2035"; repStart "-2837"; chr17 rmsk exon 62185133 62185522 854 - . gene_id "ERV316A3_17q23.2a"; transcript_id "ERV316A3_17q23.2a"; locus "ERV316A3_17q23.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2494"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "1213"; repStart "-3552"; ### ERV316A3_17q23.2b ### chr17 rmsk gene 62186186 62188311 . - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2495"; model_cov "1278"; model_pct "24.5"; chr17 rmsk exon 62186186 62186468 305 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "1459"; repStart "-3459"; chr17 rmsk exon 62186444 62186820 1127 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "886"; repFamily "ERVL"; repLeft "415"; repStart "-4340"; chr17 rmsk exon 62186824 62187180 796 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "736"; repFamily "ERVL"; repLeft "366"; repStart "-4490"; chr17 rmsk exon 62187773 62187915 796 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "231"; repStart "-4866"; chr17 rmsk exon 62187926 62188006 1135 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "369"; repStart "0"; chr17 rmsk exon 62188166 62188311 1135 - . gene_id "ERV316A3_17q23.2b"; transcript_id "ERV316A3_17q23.2b"; locus "ERV316A3_17q23.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2495"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "245"; repStart "-70"; ### MER41_17q23.3a ### chr17 rmsk gene 64421422 64424385 . + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0489"; model_cov "1032"; model_pct "17.4"; chr17 rmsk exon 64421422 64421844 3231 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "1816"; repFamily "ERV1"; repLeft "-4130"; repStart "1406"; chr17 rmsk exon 64422100 64422117 3231 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "1820"; repFamily "ERV1"; repLeft "-4126"; repStart "1817"; chr17 rmsk exon 64422436 64422577 3231 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "1949"; repFamily "ERV1"; repLeft "-3997"; repStart "1821"; chr17 rmsk exon 64422580 64422876 1854 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "2580"; repFamily "ERV1"; repLeft "-3366"; repStart "2281"; chr17 rmsk exon 64422876 64422963 901 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "2323"; repFamily "ERV1"; repLeft "-3623"; repStart "2237"; chr17 rmsk exon 64423279 64423330 901 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "2379"; repFamily "ERV1"; repLeft "-3567"; repStart "2324"; chr17 rmsk exon 64424332 64424385 901 + . gene_id "MER41_17q23.3a"; transcript_id "MER41_17q23.3a"; locus "MER41_17q23.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0489"; repClass "LTR"; repEnd "2431"; repFamily "ERV1"; repLeft "-3515"; repStart "2380"; ### MER41_17q23.3b ### chr17 rmsk gene 64424386 64432048 . - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0491"; model_cov "3703"; model_pct "62.3"; chr17 rmsk exon 64424386 64425006 4052 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0491"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr17 rmsk exon 64425336 64425446 699 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0491"; repClass "LTR"; repEnd "222"; repFamily "ERV1"; repLeft "114"; repStart "-412"; chr17 rmsk exon 64425451 64425808 1545 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "5940"; repFamily "ERV1"; repLeft "5503"; repStart "-6"; chr17 rmsk exon 64426107 64426447 10376 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "4606"; repFamily "ERV1"; repLeft "4364"; repStart "-1340"; chr17 rmsk exon 64427107 64428055 10376 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "4363"; repFamily "ERV1"; repLeft "3421"; repStart "-1583"; chr17 rmsk exon 64428375 64428949 10376 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "3420"; repFamily "ERV1"; repLeft "2744"; repStart "-2526"; chr17 rmsk exon 64429251 64429604 10376 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "2743"; repFamily "ERV1"; repLeft "2655"; repStart "-3203"; chr17 rmsk exon 64429598 64429865 6402 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "1321"; repFamily "ERV1"; repLeft "1073"; repStart "-4625"; chr17 rmsk exon 64430174 64430911 6402 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "1072"; repFamily "ERV1"; repLeft "322"; repStart "-4874"; chr17 rmsk exon 64431210 64431443 6402 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0491"; repClass "LTR"; repEnd "321"; repFamily "ERV1"; repLeft "1"; repStart "-5625"; chr17 rmsk exon 64431444 64432048 3493 - . gene_id "MER41_17q23.3b"; transcript_id "MER41_17q23.3b"; locus "MER41_17q23.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0491"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_17q24.1 ### chr17 rmsk gene 64714760 64715817 . + . gene_id "ERVLE_17q24.1"; transcript_id "ERVLE_17q24.1"; locus "ERVLE_17q24.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3289"; model_cov "573"; model_pct "10.1"; chr17 rmsk exon 64714760 64715155 303 + . gene_id "ERVLE_17q24.1"; transcript_id "ERVLE_17q24.1"; locus "ERVLE_17q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3289"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "-4071"; repStart "1195"; chr17 rmsk exon 64715648 64715817 384 + . gene_id "ERVLE_17q24.1"; transcript_id "ERVLE_17q24.1"; locus "ERVLE_17q24.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3289"; repClass "LTR"; repEnd "4668"; repFamily "ERVL"; repLeft "-999"; repStart "4496"; ### ERVLB4_17q24.1 ### chr17 rmsk gene 65912010 65912609 . - . gene_id "ERVLB4_17q24.1"; transcript_id "ERVLB4_17q24.1"; locus "ERVLB4_17q24.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1591"; model_cov "612"; model_pct "10.7"; chr17 rmsk exon 65912010 65912609 543 - . gene_id "ERVLB4_17q24.1"; transcript_id "ERVLB4_17q24.1"; locus "ERVLB4_17q24.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1591"; repClass "LTR"; repEnd "1803"; repFamily "ERVL"; repLeft "1191"; repStart "-3911"; ### ERV316A3_17q24.2a ### chr17 rmsk gene 66206755 66208661 . + . gene_id "ERV316A3_17q24.2a"; transcript_id "ERV316A3_17q24.2a"; locus "ERV316A3_17q24.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2497"; model_cov "2066"; model_pct "39.5"; chr17 rmsk exon 66206755 66208326 3739 + . gene_id "ERV316A3_17q24.2a"; transcript_id "ERV316A3_17q24.2a"; locus "ERV316A3_17q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2497"; repClass "LTR"; repEnd "4551"; repFamily "ERVL"; repLeft "-675"; repStart "2757"; chr17 rmsk exon 66208388 66208661 1009 + . gene_id "ERV316A3_17q24.2a"; transcript_id "ERV316A3_17q24.2a"; locus "ERV316A3_17q24.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2497"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-21"; repStart "4933"; ### ERVLE_17q24.2a ### chr17 rmsk gene 68028400 68030765 . - . gene_id "ERVLE_17q24.2a"; transcript_id "ERVLE_17q24.2a"; locus "ERVLE_17q24.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3291"; model_cov "738"; model_pct "13.0"; chr17 rmsk exon 68028400 68028547 1010 - . gene_id "ERVLE_17q24.2a"; transcript_id "ERVLE_17q24.2a"; locus "ERVLE_17q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3291"; repClass "LTR"; repEnd "3807"; repFamily "ERVL"; repLeft "3660"; repStart "-1860"; chr17 rmsk exon 68029653 68029967 1010 - . gene_id "ERVLE_17q24.2a"; transcript_id "ERVLE_17q24.2a"; locus "ERVLE_17q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3291"; repClass "LTR"; repEnd "3659"; repFamily "ERVL"; repLeft "3300"; repStart "-2008"; chr17 rmsk exon 68030535 68030765 856 - . gene_id "ERVLE_17q24.2a"; transcript_id "ERVLE_17q24.2a"; locus "ERVLE_17q24.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3291"; repClass "LTR"; repEnd "2245"; repFamily "ERVL"; repLeft "2013"; repStart "-3422"; ### ERVLE_17q24.2b ### chr17 rmsk gene 68080307 68084537 . - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3292"; model_cov "1054"; model_pct "18.6"; chr17 rmsk exon 68080307 68080472 697 - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3292"; repClass "LTR"; repEnd "4919"; repFamily "ERVL"; repLeft "4766"; repStart "-748"; chr17 rmsk exon 68082167 68082241 697 - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3292"; repClass "LTR"; repEnd "4765"; repFamily "ERVL"; repLeft "4674"; repStart "-902"; chr17 rmsk exon 68082543 68082724 697 - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3292"; repClass "LTR"; repEnd "4673"; repFamily "ERVL"; repLeft "4496"; repStart "-994"; chr17 rmsk exon 68083325 68083704 258 - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3292"; repClass "LTR"; repEnd "750"; repFamily "ERVL"; repLeft "341"; repStart "-4917"; chr17 rmsk exon 68084303 68084537 258 - . gene_id "ERVLE_17q24.2b"; transcript_id "ERVLE_17q24.2b"; locus "ERVLE_17q24.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3292"; repClass "LTR"; repEnd "340"; repFamily "ERVL"; repLeft "116"; repStart "-5327"; ### HERVFRD_17q24.2 ### chr17 rmsk gene 68490546 68493384 . - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0164"; model_cov "1768"; model_pct "24.5"; chr17 rmsk exon 68490546 68491082 4342 - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0164"; repClass "LTR"; repEnd "1856"; repFamily "ERV1"; repLeft "1298"; repStart "-5349"; chr17 rmsk exon 68491392 68491570 4342 - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0164"; repClass "LTR"; repEnd "1297"; repFamily "ERV1"; repLeft "1126"; repStart "-5908"; chr17 rmsk exon 68491586 68492612 6631 - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0164"; repClass "LTR"; repEnd "1041"; repFamily "ERV1"; repLeft "2"; repStart "-6164"; chr17 rmsk exon 68492614 68492809 1055 - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0164"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "517"; repStart "-23"; chr17 rmsk exon 68493310 68493384 473 - . gene_id "HERVFRD_17q24.2"; transcript_id "HERVFRD_17q24.2"; locus "HERVFRD_17q24.2"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0164"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "499"; repStart "-160"; ### HERVH_17q24.2 ### chr17 rmsk gene 68795454 68798097 . - . gene_id "HERVH_17q24.2"; transcript_id "HERVH_17q24.2"; locus "HERVH_17q24.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1112"; model_cov "1951"; model_pct "25.3"; chr17 rmsk exon 68795454 68795979 3248 - . gene_id "HERVH_17q24.2"; transcript_id "HERVH_17q24.2"; locus "HERVH_17q24.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1112"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr17 rmsk exon 68795980 68796484 3066 - . gene_id "HERVH_17q24.2"; transcript_id "HERVH_17q24.2"; locus "HERVH_17q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1112"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7215"; repStart "0"; chr17 rmsk exon 68796483 68797604 3788 - . gene_id "HERVH_17q24.2"; transcript_id "HERVH_17q24.2"; locus "HERVH_17q24.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1112"; repClass "LTR"; repEnd "1454"; repFamily "ERV1"; repLeft "1"; repStart "-6259"; chr17 rmsk exon 68797605 68798097 3175 - . gene_id "HERVH_17q24.2"; transcript_id "HERVH_17q24.2"; locus "HERVH_17q24.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1112"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_17q24.2b ### chr17 rmsk gene 68820905 68823230 . + . gene_id "ERV316A3_17q24.2b"; transcript_id "ERV316A3_17q24.2b"; locus "ERV316A3_17q24.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2500"; model_cov "1752"; model_pct "33.5"; chr17 rmsk exon 68820905 68821323 1089 + . gene_id "ERV316A3_17q24.2b"; transcript_id "ERV316A3_17q24.2b"; locus "ERV316A3_17q24.2b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2500"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr17 rmsk exon 68821510 68823230 2219 + . gene_id "ERV316A3_17q24.2b"; transcript_id "ERV316A3_17q24.2b"; locus "ERV316A3_17q24.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2500"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "-3238"; repStart "236"; ### ERV316A3_17q24.2c ### chr17 rmsk gene 68957131 68958397 . + . gene_id "ERV316A3_17q24.2c"; transcript_id "ERV316A3_17q24.2c"; locus "ERV316A3_17q24.2c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2501"; model_cov "1235"; model_pct "23.6"; chr17 rmsk exon 68957131 68957744 2230 + . gene_id "ERV316A3_17q24.2c"; transcript_id "ERV316A3_17q24.2c"; locus "ERV316A3_17q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2501"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-2998"; repStart "1594"; chr17 rmsk exon 68957817 68958397 2230 + . gene_id "ERV316A3_17q24.2c"; transcript_id "ERV316A3_17q24.2c"; locus "ERV316A3_17q24.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2501"; repClass "LTR"; repEnd "2830"; repFamily "ERVL"; repLeft "-2396"; repStart "2229"; ### ERV316A3_17q24.3a ### chr17 rmsk gene 69237066 69240465 . - . gene_id "ERV316A3_17q24.3a"; transcript_id "ERV316A3_17q24.3a"; locus "ERV316A3_17q24.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2502"; model_cov "1911"; model_pct "36.6"; chr17 rmsk exon 69237066 69237623 1225 - . gene_id "ERV316A3_17q24.3a"; transcript_id "ERV316A3_17q24.3a"; locus "ERV316A3_17q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2502"; repClass "LTR"; repEnd "3045"; repFamily "ERVL"; repLeft "2475"; repStart "-2181"; chr17 rmsk exon 69238373 69239006 2829 - . gene_id "ERV316A3_17q24.3a"; transcript_id "ERV316A3_17q24.3a"; locus "ERV316A3_17q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2502"; repClass "LTR"; repEnd "2048"; repFamily "ERVL"; repLeft "1445"; repStart "-3178"; chr17 rmsk exon 69239639 69240333 2829 - . gene_id "ERV316A3_17q24.3a"; transcript_id "ERV316A3_17q24.3a"; locus "ERV316A3_17q24.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2502"; repClass "LTR"; repEnd "1444"; repFamily "ERVL"; repLeft "706"; repStart "-3782"; chr17 rmsk exon 69240346 69240465 432 - . gene_id "ERV316A3_17q24.3a"; transcript_id "ERV316A3_17q24.3a"; locus "ERV316A3_17q24.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2502"; repClass "LTR"; repEnd "127"; repFamily "ERVL"; repLeft "5"; repStart "-324"; ### ERVLE_17q24.3a ### chr17 rmsk gene 69476407 69476987 . - . gene_id "ERVLE_17q24.3a"; transcript_id "ERVLE_17q24.3a"; locus "ERVLE_17q24.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3293"; model_cov "585"; model_pct "10.3"; chr17 rmsk exon 69476407 69476987 1451 - . gene_id "ERVLE_17q24.3a"; transcript_id "ERVLE_17q24.3a"; locus "ERVLE_17q24.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3293"; repClass "LTR"; repEnd "4566"; repFamily "ERVL"; repLeft "3981"; repStart "-1101"; ### ERV316A3_17q24.3b ### chr17 rmsk gene 69619386 69620049 . - . gene_id "ERV316A3_17q24.3b"; transcript_id "ERV316A3_17q24.3b"; locus "ERV316A3_17q24.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2503"; model_cov "671"; model_pct "12.8"; chr17 rmsk exon 69619386 69620049 1443 - . gene_id "ERV316A3_17q24.3b"; transcript_id "ERV316A3_17q24.3b"; locus "ERV316A3_17q24.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2503"; repClass "LTR"; repEnd "1374"; repFamily "ERVL"; repLeft "703"; repStart "-3852"; ### ERV316A3_17q24.3c ### chr17 rmsk gene 69824380 69825641 . + . gene_id "ERV316A3_17q24.3c"; transcript_id "ERV316A3_17q24.3c"; locus "ERV316A3_17q24.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2504"; model_cov "836"; model_pct "16.0"; chr17 rmsk exon 69824380 69824756 1002 + . gene_id "ERV316A3_17q24.3c"; transcript_id "ERV316A3_17q24.3c"; locus "ERV316A3_17q24.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2504"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "35"; chr17 rmsk exon 69824811 69825290 620 + . gene_id "ERV316A3_17q24.3c"; transcript_id "ERV316A3_17q24.3c"; locus "ERV316A3_17q24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2504"; repClass "LTR"; repEnd "903"; repFamily "ERVL"; repLeft "-4323"; repStart "402"; chr17 rmsk exon 69825309 69825641 871 + . gene_id "ERV316A3_17q24.3c"; transcript_id "ERV316A3_17q24.3c"; locus "ERV316A3_17q24.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2504"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-3913"; repStart "978"; ### ERV316A3_17q24.3d ### chr17 rmsk gene 69825947 69828027 . + . gene_id "ERV316A3_17q24.3d"; transcript_id "ERV316A3_17q24.3d"; locus "ERV316A3_17q24.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2505"; model_cov "864"; model_pct "16.5"; chr17 rmsk exon 69825947 69826124 871 + . gene_id "ERV316A3_17q24.3d"; transcript_id "ERV316A3_17q24.3d"; locus "ERV316A3_17q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2505"; repClass "LTR"; repEnd "1237"; repFamily "ERVL"; repLeft "-3989"; repStart "1066"; chr17 rmsk exon 69826893 69827430 1525 + . gene_id "ERV316A3_17q24.3d"; transcript_id "ERV316A3_17q24.3d"; locus "ERV316A3_17q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2505"; repClass "LTR"; repEnd "2634"; repFamily "ERVL"; repLeft "-2592"; repStart "2135"; chr17 rmsk exon 69827862 69828027 1525 + . gene_id "ERV316A3_17q24.3d"; transcript_id "ERV316A3_17q24.3d"; locus "ERV316A3_17q24.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2505"; repClass "LTR"; repEnd "2829"; repFamily "ERVL"; repLeft "-2397"; repStart "2635"; ### ERVLE_17q24.3b ### chr17 rmsk gene 70379225 70382952 . - . gene_id "ERVLE_17q24.3b"; transcript_id "ERVLE_17q24.3b"; locus "ERVLE_17q24.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3294"; model_cov "1051"; model_pct "18.5"; chr17 rmsk exon 70379225 70379420 382 - . gene_id "ERVLE_17q24.3b"; transcript_id "ERVLE_17q24.3b"; locus "ERVLE_17q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3294"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "2927"; repStart "-2542"; chr17 rmsk exon 70380610 70380881 599 - . gene_id "ERVLE_17q24.3b"; transcript_id "ERVLE_17q24.3b"; locus "ERVLE_17q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3294"; repClass "LTR"; repEnd "2224"; repFamily "ERVL"; repLeft "1944"; repStart "-3443"; chr17 rmsk exon 70381575 70381873 375 - . gene_id "ERVLE_17q24.3b"; transcript_id "ERVLE_17q24.3b"; locus "ERVLE_17q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3294"; repClass "LTR"; repEnd "1366"; repFamily "ERVL"; repLeft "1050"; repStart "-4301"; chr17 rmsk exon 70382712 70382952 386 - . gene_id "ERVLE_17q24.3b"; transcript_id "ERVLE_17q24.3b"; locus "ERVLE_17q24.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3294"; repClass "LTR"; repEnd "719"; repFamily "ERVL"; repLeft "462"; repStart "-4948"; ### ERV316A3_17q24.3e ### chr17 rmsk gene 70420703 70422512 . - . gene_id "ERV316A3_17q24.3e"; transcript_id "ERV316A3_17q24.3e"; locus "ERV316A3_17q24.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2507"; model_cov "972"; model_pct "18.6"; chr17 rmsk exon 70420703 70421128 501 - . gene_id "ERV316A3_17q24.3e"; transcript_id "ERV316A3_17q24.3e"; locus "ERV316A3_17q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2507"; repClass "LTR"; repEnd "4383"; repFamily "ERVL"; repLeft "3871"; repStart "-843"; chr17 rmsk exon 70421194 70421495 663 - . gene_id "ERV316A3_17q24.3e"; transcript_id "ERV316A3_17q24.3e"; locus "ERV316A3_17q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2507"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "3462"; repStart "-1449"; chr17 rmsk exon 70421657 70421797 281 - . gene_id "ERV316A3_17q24.3e"; transcript_id "ERV316A3_17q24.3e"; locus "ERV316A3_17q24.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2507"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "2756"; repStart "-2325"; chr17 rmsk exon 70422146 70422512 1028 - . gene_id "ERV316A3_17q24.3e"; transcript_id "ERV316A3_17q24.3e"; locus "ERV316A3_17q24.3e"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2507"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "98"; repStart "-3"; ### HERVL18_17q24.3 ### chr17 rmsk gene 70668378 70671538 . + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0136"; model_cov "1778"; model_pct "29.4"; chr17 rmsk exon 70668378 70668976 3494 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr17 rmsk exon 70669156 70669334 727 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "492"; chr17 rmsk exon 70669330 70669376 264 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-5084"; repStart "917"; chr17 rmsk exon 70669362 70669720 1125 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1383"; chr17 rmsk exon 70669783 70669944 664 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2231"; chr17 rmsk exon 70669944 70670240 1370 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "3088"; repFamily "ERVL"; repLeft "-2959"; repStart "2720"; chr17 rmsk exon 70670234 70670771 3537 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2949"; chr17 rmsk exon 70670933 70671538 3734 + . gene_id "HERVL18_17q24.3"; transcript_id "HERVL18_17q24.3"; locus "HERVL18_17q24.3"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0136"; repClass "LTR"; repEnd "612"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL_17q24.3 ### chr17 rmsk gene 70818885 70823990 . - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1158"; model_cov "4261"; model_pct "75.4"; chr17 rmsk exon 70818885 70819290 3066 - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1158"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chr17 rmsk exon 70819291 70821648 18241 - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1158"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3249"; repStart "0"; chr17 rmsk exon 70821650 70823505 15185 - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1158"; repClass "LTR"; repEnd "1857"; repFamily "ERVL"; repLeft "1"; repStart "-3797"; chr17 rmsk exon 70823506 70823568 3145 - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1158"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "385"; repStart "0"; chr17 rmsk exon 70823612 70823990 3145 - . gene_id "HERVL_17q24.3"; transcript_id "HERVL_17q24.3"; locus "HERVL_17q24.3"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1158"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; ### ERV316A3_17q24.3f ### chr17 rmsk gene 71341967 71343486 . + . gene_id "ERV316A3_17q24.3f"; transcript_id "ERV316A3_17q24.3f"; locus "ERV316A3_17q24.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2511"; model_cov "1210"; model_pct "23.2"; chr17 rmsk exon 71341967 71342130 2279 + . gene_id "ERV316A3_17q24.3f"; transcript_id "ERV316A3_17q24.3f"; locus "ERV316A3_17q24.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2511"; repClass "LTR"; repEnd "3610"; repFamily "ERVL"; repLeft "-1616"; repStart "3447"; chr17 rmsk exon 71342433 71343486 2279 + . gene_id "ERV316A3_17q24.3f"; transcript_id "ERV316A3_17q24.3f"; locus "ERV316A3_17q24.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2511"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-568"; repStart "3611"; ### ERV316A3_17q24.3g ### chr17 rmsk gene 71942539 71948965 . + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2512"; model_cov "2713"; model_pct "51.9"; chr17 rmsk exon 71942539 71942960 1284 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "5"; chr17 rmsk exon 71942963 71943880 2207 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "1203"; repFamily "ERVL"; repLeft "-4023"; repStart "237"; chr17 rmsk exon 71946274 71947286 2951 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "-3276"; repStart "968"; chr17 rmsk exon 71947679 71947916 2951 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "2183"; repFamily "ERVL"; repLeft "-3043"; repStart "1951"; chr17 rmsk exon 71948101 71948345 1842 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "2429"; repFamily "ERVL"; repLeft "-2797"; repStart "2187"; chr17 rmsk exon 71948657 71948965 1842 + . gene_id "ERV316A3_17q24.3g"; transcript_id "ERV316A3_17q24.3g"; locus "ERV316A3_17q24.3g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2512"; repClass "LTR"; repEnd "2721"; repFamily "ERVL"; repLeft "-2505"; repStart "2430"; ### ERVLB4_17q24.3 ### chr17 rmsk gene 72642784 72644069 . + . gene_id "ERVLB4_17q24.3"; transcript_id "ERVLB4_17q24.3"; locus "ERVLB4_17q24.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1594"; model_cov "968"; model_pct "16.9"; chr17 rmsk exon 72642784 72643006 747 + . gene_id "ERVLB4_17q24.3"; transcript_id "ERVLB4_17q24.3"; locus "ERVLB4_17q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1594"; repClass "LTR"; repEnd "3671"; repFamily "ERVL"; repLeft "-2043"; repStart "3439"; chr17 rmsk exon 72643305 72643808 747 + . gene_id "ERVLB4_17q24.3"; transcript_id "ERVLB4_17q24.3"; locus "ERVLB4_17q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1594"; repClass "LTR"; repEnd "4192"; repFamily "ERVL"; repLeft "-1522"; repStart "3672"; chr17 rmsk exon 72643881 72643989 399 + . gene_id "ERVLB4_17q24.3"; transcript_id "ERVLB4_17q24.3"; locus "ERVLB4_17q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1594"; repClass "LTR"; repEnd "4424"; repFamily "ERVL"; repLeft "-1290"; repStart "4282"; chr17 rmsk exon 72643995 72644069 306 + . gene_id "ERVLB4_17q24.3"; transcript_id "ERVLB4_17q24.3"; locus "ERVLB4_17q24.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1594"; repClass "LTR"; repEnd "4520"; repFamily "ERVL"; repLeft "-1194"; repStart "4446"; ### ERVLE_17q25.1a ### chr17 rmsk gene 74170622 74173400 . + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3297"; model_cov "1912"; model_pct "33.7"; chr17 rmsk exon 74170622 74171503 4318 + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3297"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "-1265"; repStart "3511"; chr17 rmsk exon 74171838 74171889 4318 + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3297"; repClass "LTR"; repEnd "4449"; repFamily "ERVL"; repLeft "-1218"; repStart "4403"; chr17 rmsk exon 74172207 74172465 4318 + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3297"; repClass "LTR"; repEnd "4717"; repFamily "ERVL"; repLeft "-950"; repStart "4450"; chr17 rmsk exon 74172606 74172834 941 + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3297"; repClass "LTR"; repEnd "4936"; repFamily "ERVL"; repLeft "-731"; repStart "4710"; chr17 rmsk exon 74172923 74173400 731 + . gene_id "ERVLE_17q25.1a"; transcript_id "ERVLE_17q25.1a"; locus "ERVLE_17q25.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3297"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5184"; ### HERVH_17q25.1a ### chr17 rmsk gene 74503255 74506420 . + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1113"; model_cov "2870"; model_pct "37.2"; chr17 rmsk exon 74503255 74504005 4797 + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1113"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "2086"; chr17 rmsk exon 74504006 74505228 3505 + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1113"; repClass "LTR"; repEnd "5777"; repFamily "ERV1"; repLeft "-1936"; repStart "4416"; chr17 rmsk exon 74505219 74505481 1560 + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1113"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr17 rmsk exon 74505475 74505977 3077 + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1113"; repClass "LTR"; repEnd "7662"; repFamily "ERV1"; repLeft "-51"; repStart "7157"; chr17 rmsk exon 74506034 74506420 2829 + . gene_id "HERVH_17q25.1a"; transcript_id "HERVH_17q25.1a"; locus "HERVH_17q25.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1113"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_17q25.1 ### chr17 rmsk gene 74540590 74541302 . + . gene_id "ERVLB4_17q25.1"; transcript_id "ERVLB4_17q25.1"; locus "ERVLB4_17q25.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1595"; model_cov "728"; model_pct "12.7"; chr17 rmsk exon 74540590 74541302 1353 + . gene_id "ERVLB4_17q25.1"; transcript_id "ERVLB4_17q25.1"; locus "ERVLB4_17q25.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1595"; repClass "LTR"; repEnd "2287"; repFamily "ERVL"; repLeft "-3427"; repStart "1559"; ### ERVLE_17q25.1b ### chr17 rmsk gene 74548445 74549130 . + . gene_id "ERVLE_17q25.1b"; transcript_id "ERVLE_17q25.1b"; locus "ERVLE_17q25.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3299"; model_cov "686"; model_pct "12.1"; chr17 rmsk exon 74548445 74549130 1383 + . gene_id "ERVLE_17q25.1b"; transcript_id "ERVLE_17q25.1b"; locus "ERVLE_17q25.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3299"; repClass "LTR"; repEnd "2235"; repFamily "ERVL"; repLeft "-3432"; repStart "1549"; ### HML6_17q25.1 ### chr17 rmsk gene 74584366 74586931 . + . gene_id "HML6_17q25.1"; transcript_id "HML6_17q25.1"; locus "HML6_17q25.1"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0076"; model_cov "2096"; model_pct "29.1"; chr17 rmsk exon 74584366 74584792 2326 + . gene_id "HML6_17q25.1"; transcript_id "HML6_17q25.1"; locus "HML6_17q25.1"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0076"; repClass "LTR"; repEnd "431"; repFamily "ERVK"; repLeft "-6"; repStart "1"; chr17 rmsk exon 74584820 74586931 12874 + . gene_id "HML6_17q25.1"; transcript_id "HML6_17q25.1"; locus "HML6_17q25.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0076"; repClass "LTR"; repEnd "2124"; repFamily "ERVK"; repLeft "-5078"; repStart "28"; ### HML1_17q25.1 ### chr17 rmsk gene 75022576 75030520 . + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0106"; model_cov "5317"; model_pct "87.2"; chr17 rmsk exon 75022576 75022913 2559 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr17 rmsk exon 75022914 75023097 22762 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "186"; repFamily "ERVK"; repLeft "-5910"; repStart "1"; chr17 rmsk exon 75023410 75025087 22762 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "1827"; repFamily "ERVK"; repLeft "-4269"; repStart "187"; chr17 rmsk exon 75025741 75025847 22762 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "1934"; repFamily "ERVK"; repLeft "-4162"; repStart "1828"; chr17 rmsk exon 75026148 75027235 22762 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "3025"; repFamily "ERVK"; repLeft "-3071"; repStart "1935"; chr17 rmsk exon 75027234 75028169 14821 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "4554"; repFamily "ERVK"; repLeft "-1542"; repStart "3630"; chr17 rmsk exon 75028477 75029116 14821 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "5190"; repFamily "ERVK"; repLeft "-906"; repStart "4555"; chr17 rmsk exon 75029427 75029766 14821 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "5551"; repFamily "ERVK"; repLeft "-545"; repStart "5191"; chr17 rmsk exon 75029766 75029983 1522 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5656"; chr17 rmsk exon 75030046 75030173 775 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5960"; chr17 rmsk exon 75030177 75030520 2717 + . gene_id "HML1_17q25.1"; transcript_id "HML1_17q25.1"; locus "HML1_17q25.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0106"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_17q25.1b ### chr17 rmsk gene 75252621 75258281 . + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1114"; model_cov "4711"; model_pct "61.1"; chr17 rmsk exon 75252621 75253051 3360 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr17 rmsk exon 75253054 75255974 15290 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr17 rmsk exon 75255969 75256131 892 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-4401"; repStart "3140"; chr17 rmsk exon 75256107 75256607 3186 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr17 rmsk exon 75256610 75257265 4162 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr17 rmsk exon 75257267 75257854 2239 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr17 rmsk exon 75257855 75258281 3382 + . gene_id "HERVH_17q25.1b"; transcript_id "HERVH_17q25.1b"; locus "HERVH_17q25.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1114"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_17q25.1c ### chr17 rmsk gene 76605988 76611511 . - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1115"; model_cov "4906"; model_pct "63.6"; chr17 rmsk exon 76605988 76606398 2752 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr17 rmsk exon 76606399 76606773 2282 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr17 rmsk exon 76606774 76606989 1358 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr17 rmsk exon 76606991 76607649 4291 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr17 rmsk exon 76607652 76608153 3217 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr17 rmsk exon 76608144 76608291 865 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr17 rmsk exon 76608286 76611082 15901 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr17 rmsk exon 76611085 76611511 2654 - . gene_id "HERVH_17q25.1c"; transcript_id "HERVH_17q25.1c"; locus "HERVH_17q25.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1115"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_17q25.3a ### chr17 rmsk gene 77983155 77984049 . + . gene_id "ERVLE_17q25.3a"; transcript_id "ERVLE_17q25.3a"; locus "ERVLE_17q25.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3300"; model_cov "956"; model_pct "16.9"; chr17 rmsk exon 77983155 77984049 2259 + . gene_id "ERVLE_17q25.3a"; transcript_id "ERVLE_17q25.3a"; locus "ERVLE_17q25.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3300"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4711"; ### MER41_17q25.3 ### chr17 rmsk gene 79011645 79018141 . + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0492"; model_cov "5943"; model_pct "99.9"; chr17 rmsk exon 79011645 79012265 4410 + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0492"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr17 rmsk exon 79012266 79015576 18340 + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0492"; repClass "LTR"; repEnd "4655"; repFamily "ERV1"; repLeft "-1291"; repStart "1"; chr17 rmsk exon 79015885 79016877 18340 + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0492"; repClass "LTR"; repEnd "5614"; repFamily "ERV1"; repLeft "-332"; repStart "4656"; chr17 rmsk exon 79017284 79017619 18340 + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0492"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5615"; chr17 rmsk exon 79017620 79018141 3106 + . gene_id "MER41_17q25.3"; transcript_id "MER41_17q25.3"; locus "MER41_17q25.3"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0492"; repClass "LTR"; repEnd "515"; repFamily "ERV1"; repLeft "-119"; repStart "1"; ### ERVLB4_17q25.3a ### chr17 rmsk gene 79203936 79206370 . + . gene_id "ERVLB4_17q25.3a"; transcript_id "ERVLB4_17q25.3a"; locus "ERVLB4_17q25.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1597"; model_cov "2576"; model_pct "45.1"; chr17 rmsk exon 79203936 79206370 2422 + . gene_id "ERVLB4_17q25.3a"; transcript_id "ERVLB4_17q25.3a"; locus "ERVLB4_17q25.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1597"; repClass "LTR"; repEnd "3107"; repFamily "ERVL"; repLeft "-2607"; repStart "531"; ### ERV316A3_17q25.3a ### chr17 rmsk gene 79901129 79904073 . - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2516"; model_cov "1435"; model_pct "27.5"; chr17 rmsk exon 79901129 79901401 571 - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2516"; repClass "LTR"; repEnd "334"; repFamily "ERVL"; repLeft "5"; repStart "-104"; chr17 rmsk exon 79901460 79901494 1897 - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2516"; repClass "LTR"; repEnd "5179"; repFamily "ERVL"; repLeft "5150"; repStart "-47"; chr17 rmsk exon 79901934 79902799 1897 - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2516"; repClass "LTR"; repEnd "5149"; repFamily "ERVL"; repLeft "4270"; repStart "-77"; chr17 rmsk exon 79903571 79903818 494 - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2516"; repClass "LTR"; repEnd "3266"; repFamily "ERVL"; repLeft "3005"; repStart "-1960"; chr17 rmsk exon 79903871 79904073 1361 - . gene_id "ERV316A3_17q25.3a"; transcript_id "ERV316A3_17q25.3a"; locus "ERV316A3_17q25.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2516"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "2669"; repStart "-2291"; ### ERV316A3_17q25.3b ### chr17 rmsk gene 79904359 79906563 . - . gene_id "ERV316A3_17q25.3b"; transcript_id "ERV316A3_17q25.3b"; locus "ERV316A3_17q25.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2517"; model_cov "1226"; model_pct "23.5"; chr17 rmsk exon 79904359 79904803 1376 - . gene_id "ERV316A3_17q25.3b"; transcript_id "ERV316A3_17q25.3b"; locus "ERV316A3_17q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2517"; repClass "LTR"; repEnd "3061"; repFamily "ERVL"; repLeft "2470"; repStart "-2165"; chr17 rmsk exon 79906010 79906563 667 - . gene_id "ERV316A3_17q25.3b"; transcript_id "ERV316A3_17q25.3b"; locus "ERV316A3_17q25.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2517"; repClass "LTR"; repEnd "2368"; repFamily "ERVL"; repLeft "1733"; repStart "-2858"; ### ERVLB4_17q25.3b ### chr17 rmsk gene 80265360 80268548 . + . gene_id "ERVLB4_17q25.3b"; transcript_id "ERVLB4_17q25.3b"; locus "ERVLB4_17q25.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1598"; model_cov "841"; model_pct "14.7"; chr17 rmsk exon 80265360 80265788 1831 + . gene_id "ERVLB4_17q25.3b"; transcript_id "ERVLB4_17q25.3b"; locus "ERVLB4_17q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1598"; repClass "LTR"; repEnd "545"; repFamily "ERVL"; repLeft "-5169"; repStart "120"; chr17 rmsk exon 80265924 80266016 1831 + . gene_id "ERVLB4_17q25.3b"; transcript_id "ERVLB4_17q25.3b"; locus "ERVLB4_17q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1598"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "-5076"; repStart "546"; chr17 rmsk exon 80266018 80266158 731 + . gene_id "ERVLB4_17q25.3b"; transcript_id "ERVLB4_17q25.3b"; locus "ERVLB4_17q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1598"; repClass "LTR"; repEnd "1177"; repFamily "ERVL"; repLeft "-4537"; repStart "1032"; chr17 rmsk exon 80268381 80268548 901 + . gene_id "ERVLB4_17q25.3b"; transcript_id "ERVLB4_17q25.3b"; locus "ERVLB4_17q25.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1598"; repClass "LTR"; repEnd "2445"; repFamily "ERVL"; repLeft "-3269"; repStart "2266"; ### HARLEQUIN_17q25.3a ### chr17 rmsk gene 80397328 80399793 . + . gene_id "HARLEQUIN_17q25.3a"; transcript_id "HARLEQUIN_17q25.3a"; locus "HARLEQUIN_17q25.3a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0154"; model_cov "2073"; model_pct "30.1"; chr17 rmsk exon 80397328 80397781 3748 + . gene_id "HARLEQUIN_17q25.3a"; transcript_id "HARLEQUIN_17q25.3a"; locus "HARLEQUIN_17q25.3a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0154"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17 rmsk exon 80397782 80399793 7508 + . gene_id "HARLEQUIN_17q25.3a"; transcript_id "HARLEQUIN_17q25.3a"; locus "HARLEQUIN_17q25.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0154"; repClass "LTR"; repEnd "2074"; repFamily "ERV1"; repLeft "-4822"; repStart "1"; ### HERVH_17q25.3 ### chr17 rmsk gene 80399794 80408186 . + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1117"; model_cov "7350"; model_pct "95.3"; chr17 rmsk exon 80399794 80400230 3625 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr17 rmsk exon 80400241 80403146 8045 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "2818"; repFamily "ERV1"; repLeft "-4895"; repStart "1"; chr17 rmsk exon 80403181 80403381 8045 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "2819"; chr17 rmsk exon 80403368 80403814 2708 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "3140"; chr17 rmsk exon 80403803 80407762 23016 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3800"; chr17 rmsk exon 80407763 80408186 3293 + . gene_id "HERVH_17q25.3"; transcript_id "HERVH_17q25.3"; locus "HERVH_17q25.3"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1117"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_17q25.3b ### chr17 rmsk gene 80408187 80413516 . + . gene_id "HARLEQUIN_17q25.3b"; transcript_id "HARLEQUIN_17q25.3b"; locus "HARLEQUIN_17q25.3b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0155"; model_cov "4848"; model_pct "70.3"; chr17 rmsk exon 80408187 80408936 5046 + . gene_id "HARLEQUIN_17q25.3b"; transcript_id "HARLEQUIN_17q25.3b"; locus "HARLEQUIN_17q25.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0155"; repClass "LTR"; repEnd "2799"; repFamily "ERV1"; repLeft "-4097"; repStart "2071"; chr17 rmsk exon 80408952 80412448 28946 + . gene_id "HARLEQUIN_17q25.3b"; transcript_id "HARLEQUIN_17q25.3b"; locus "HARLEQUIN_17q25.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0155"; repClass "LTR"; repEnd "6355"; repFamily "ERV1"; repLeft "-541"; repStart "2775"; chr17 rmsk exon 80412538 80413064 28946 + . gene_id "HARLEQUIN_17q25.3b"; transcript_id "HARLEQUIN_17q25.3b"; locus "HARLEQUIN_17q25.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0155"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6356"; chr17 rmsk exon 80413069 80413516 3587 + . gene_id "HARLEQUIN_17q25.3b"; transcript_id "HARLEQUIN_17q25.3b"; locus "HARLEQUIN_17q25.3b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0155"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "8"; ### ERVLE_17q25.3b ### chr17 rmsk gene 80989236 80990718 . + . gene_id "ERVLE_17q25.3b"; transcript_id "ERVLE_17q25.3b"; locus "ERVLE_17q25.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3303"; model_cov "927"; model_pct "16.4"; chr17 rmsk exon 80989236 80990011 587 + . gene_id "ERVLE_17q25.3b"; transcript_id "ERVLE_17q25.3b"; locus "ERVLE_17q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3303"; repClass "LTR"; repEnd "1905"; repFamily "ERVL"; repLeft "-3762"; repStart "1098"; chr17 rmsk exon 80990604 80990718 515 + . gene_id "ERVLE_17q25.3b"; transcript_id "ERVLE_17q25.3b"; locus "ERVLE_17q25.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3303"; repClass "LTR"; repEnd "2825"; repFamily "ERVL"; repLeft "-2842"; repStart "2705"; ### HERVK11_17q25.3 ### chr17 rmsk gene 82040272 82041783 . - . gene_id "HERVK11_17q25.3"; transcript_id "HERVK11_17q25.3"; locus "HERVK11_17q25.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0091"; model_cov "913"; model_pct "11.5"; chr17 rmsk exon 82040272 82040590 5463 - . gene_id "HERVK11_17q25.3"; transcript_id "HERVK11_17q25.3"; locus "HERVK11_17q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0091"; repClass "LTR"; repEnd "7237"; repFamily "ERVK"; repLeft "6928"; repStart "-716"; chr17 rmsk exon 82040894 82041383 5463 - . gene_id "HERVK11_17q25.3"; transcript_id "HERVK11_17q25.3"; locus "HERVK11_17q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0091"; repClass "LTR"; repEnd "6927"; repFamily "ERVK"; repLeft "6431"; repStart "-1026"; chr17 rmsk exon 82041397 82041505 639 - . gene_id "HERVK11_17q25.3"; transcript_id "HERVK11_17q25.3"; locus "HERVK11_17q25.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0091"; repClass "LTR"; repEnd "113"; repFamily "ERVK"; repLeft "5"; repStart "-7840"; chr17 rmsk exon 82041512 82041783 1962 - . gene_id "HERVK11_17q25.3"; transcript_id "HERVK11_17q25.3"; locus "HERVK11_17q25.3"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0091"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "996"; repStart "0"; ### ERVLB4_17q25.3c ### chr17 rmsk gene 83018661 83019256 . + . gene_id "ERVLB4_17q25.3c"; transcript_id "ERVLB4_17q25.3c"; locus "ERVLB4_17q25.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1600"; model_cov "619"; model_pct "10.8"; chr17 rmsk exon 83018661 83019256 2290 + . gene_id "ERVLB4_17q25.3c"; transcript_id "ERVLB4_17q25.3c"; locus "ERVLB4_17q25.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1600"; repClass "LTR"; repEnd "5094"; repFamily "ERVL"; repLeft "-620"; repStart "4475"; ### PRIMA41_18p11.32 ### chr18 rmsk gene 49690 52854 . - . gene_id "PRIMA41_18p11.32"; transcript_id "PRIMA41_18p11.32"; locus "PRIMA41_18p11.32"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0134"; model_cov "1920"; model_pct "24.8"; chr18 rmsk exon 49690 51273 6034 - . gene_id "PRIMA41_18p11.32"; transcript_id "PRIMA41_18p11.32"; locus "PRIMA41_18p11.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0134"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4519"; repStart "-1593"; chr18 rmsk exon 51925 52207 6034 - . gene_id "PRIMA41_18p11.32"; transcript_id "PRIMA41_18p11.32"; locus "PRIMA41_18p11.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0134"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "4242"; repStart "-3238"; chr18 rmsk exon 52681 52854 839 - . gene_id "PRIMA41_18p11.32"; transcript_id "PRIMA41_18p11.32"; locus "PRIMA41_18p11.32"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0134"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "384"; repStart "0"; ### ERV316A3_18p11.32a ### chr18 rmsk gene 296526 297725 . + . gene_id "ERV316A3_18p11.32a"; transcript_id "ERV316A3_18p11.32a"; locus "ERV316A3_18p11.32a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2518"; model_cov "1101"; model_pct "21.1"; chr18 rmsk exon 296526 296827 885 + . gene_id "ERV316A3_18p11.32a"; transcript_id "ERV316A3_18p11.32a"; locus "ERV316A3_18p11.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2518"; repClass "LTR"; repEnd "3851"; repFamily "ERVL"; repLeft "-1375"; repStart "3555"; chr18 rmsk exon 296854 296921 357 + . gene_id "ERV316A3_18p11.32a"; transcript_id "ERV316A3_18p11.32a"; locus "ERV316A3_18p11.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2518"; repClass "LTR"; repEnd "4108"; repFamily "ERVL"; repLeft "-1118"; repStart "4043"; chr18 rmsk exon 297013 297725 1025 + . gene_id "ERV316A3_18p11.32a"; transcript_id "ERV316A3_18p11.32a"; locus "ERV316A3_18p11.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2518"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "-178"; repStart "4308"; ### ERV316A3_18p11.32b ### chr18 rmsk gene 583795 586143 . - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2519"; model_cov "1272"; model_pct "24.3"; chr18 rmsk exon 583795 584204 1386 - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2519"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "35"; repStart "0"; chr18 rmsk exon 584265 584296 2393 - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2519"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5207"; repStart "0"; chr18 rmsk exon 584592 584924 2393 - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2519"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "4887"; repStart "-20"; chr18 rmsk exon 585227 586025 2393 - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2519"; repClass "LTR"; repEnd "4886"; repFamily "ERVL"; repLeft "4058"; repStart "-340"; chr18 rmsk exon 586038 586143 565 - . gene_id "ERV316A3_18p11.32b"; transcript_id "ERV316A3_18p11.32b"; locus "ERV316A3_18p11.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2519"; repClass "LTR"; repEnd "3993"; repFamily "ERVL"; repLeft "3887"; repStart "-1233"; ### MER41_18p11.32 ### chr18 rmsk gene 874031 876030 . - . gene_id "MER41_18p11.32"; transcript_id "MER41_18p11.32"; locus "MER41_18p11.32"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0495"; model_cov "1533"; model_pct "25.8"; chr18 rmsk exon 874031 874487 3583 - . gene_id "MER41_18p11.32"; transcript_id "MER41_18p11.32"; locus "MER41_18p11.32"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0495"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "1"; repStart "-85"; chr18 rmsk exon 874488 876030 11097 - . gene_id "MER41_18p11.32"; transcript_id "MER41_18p11.32"; locus "MER41_18p11.32"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0495"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4411"; repStart "-2"; ### ERVLB4_18p11.32a ### chr18 rmsk gene 878513 887335 . + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1601"; model_cov "5441"; model_pct "95.2"; chr18 rmsk exon 878513 878883 1879 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-20"; repStart "1"; chr18 rmsk exon 878928 878971 228 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "388"; repFamily "ERVL"; repLeft "-9"; repStart "345"; chr18 rmsk exon 878985 879046 336 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "63"; repFamily "ERVL"; repLeft "-5651"; repStart "1"; chr18 rmsk exon 879069 879241 811 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "301"; repFamily "ERVL"; repLeft "-5413"; repStart "126"; chr18 rmsk exon 879548 879993 1801 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr18 rmsk exon 880664 880708 1801 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "473"; chr18 rmsk exon 880709 881176 2297 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "-4919"; repStart "322"; chr18 rmsk exon 881182 881352 891 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "1129"; repFamily "ERVL"; repLeft "-4585"; repStart "950"; chr18 rmsk exon 881353 881472 635 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-56"; repStart "342"; chr18 rmsk exon 881546 881655 366 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "1253"; repFamily "ERVL"; repLeft "-4461"; repStart "1138"; chr18 rmsk exon 882195 882327 567 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "1377"; repFamily "ERVL"; repLeft "-4337"; repStart "1249"; chr18 rmsk exon 882399 882619 984 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "-4102"; repStart "1381"; chr18 rmsk exon 883067 887038 22717 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "1634"; chr18 rmsk exon 887043 887335 1218 + . gene_id "ERVLB4_18p11.32a"; transcript_id "ERVLB4_18p11.32a"; locus "ERVLB4_18p11.32a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1601"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-61"; repStart "9"; ### ERV316A3_18p11.32c ### chr18 rmsk gene 1003192 1008109 . - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2521"; model_cov "3322"; model_pct "63.6"; chr18 rmsk exon 1003192 1003629 1656 - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2521"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 1003630 1003646 6543 - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2521"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5211"; repStart "0"; chr18 rmsk exon 1004370 1006366 6543 - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2521"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "3226"; repStart "-16"; chr18 rmsk exon 1006411 1007927 2682 - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2521"; repClass "LTR"; repEnd "3280"; repFamily "ERVL"; repLeft "1957"; repStart "-1946"; chr18 rmsk exon 1007934 1008109 536 - . gene_id "ERV316A3_18p11.32c"; transcript_id "ERV316A3_18p11.32c"; locus "ERV316A3_18p11.32c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2521"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "1"; repStart "-276"; ### HERVL_18p11.32a ### chr18 rmsk gene 1329269 1333326 . + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1160"; model_cov "2882"; model_pct "51.0"; chr18 rmsk exon 1329269 1329649 2274 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 1329650 1329885 1822 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "-5416"; repStart "1"; chr18 rmsk exon 1329881 1332427 21092 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "5579"; repFamily "ERVL"; repLeft "-75"; repStart "3008"; chr18 rmsk exon 1332718 1332804 21092 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5580"; chr18 rmsk exon 1332805 1333187 2818 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr18 rmsk exon 1333283 1333326 2818 + . gene_id "HERVL_18p11.32a"; transcript_id "HERVL_18p11.32a"; locus "HERVL_18p11.32a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1160"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "402"; ### ERVLB4_18p11.32b ### chr18 rmsk gene 1498300 1499333 . - . gene_id "ERVLB4_18p11.32b"; transcript_id "ERVLB4_18p11.32b"; locus "ERVLB4_18p11.32b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1604"; model_cov "621"; model_pct "10.9"; chr18 rmsk exon 1498300 1498725 1973 - . gene_id "ERVLB4_18p11.32b"; transcript_id "ERVLB4_18p11.32b"; locus "ERVLB4_18p11.32b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1604"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr18 rmsk exon 1498727 1499333 3118 - . gene_id "ERVLB4_18p11.32b"; transcript_id "ERVLB4_18p11.32b"; locus "ERVLB4_18p11.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1604"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5093"; repStart "0"; ### ERVLB4_18p11.32c ### chr18 rmsk gene 1831808 1832779 . - . gene_id "ERVLB4_18p11.32c"; transcript_id "ERVLB4_18p11.32c"; locus "ERVLB4_18p11.32c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1605"; model_cov "838"; model_pct "14.7"; chr18 rmsk exon 1831808 1832580 2202 - . gene_id "ERVLB4_18p11.32c"; transcript_id "ERVLB4_18p11.32c"; locus "ERVLB4_18p11.32c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1605"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "2536"; repStart "-2340"; chr18 rmsk exon 1832599 1832779 929 - . gene_id "ERVLB4_18p11.32c"; transcript_id "ERVLB4_18p11.32c"; locus "ERVLB4_18p11.32c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1605"; repClass "LTR"; repEnd "182"; repFamily "ERVL"; repLeft "1"; repStart "-215"; ### HERVL_18p11.32b ### chr18 rmsk gene 1854634 1861467 . - . gene_id "HERVL_18p11.32b"; transcript_id "HERVL_18p11.32b"; locus "HERVL_18p11.32b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1161"; model_cov "5653"; model_pct "100.0"; chr18 rmsk exon 1854634 1854710 345 - . gene_id "HERVL_18p11.32b"; transcript_id "HERVL_18p11.32b"; locus "HERVL_18p11.32b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1161"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "368"; repStart "0"; chr18 rmsk exon 1854962 1855389 3209 - . gene_id "HERVL_18p11.32b"; transcript_id "HERVL_18p11.32b"; locus "HERVL_18p11.32b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1161"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-108"; repStart "-40"; chr18 rmsk exon 1855392 1860970 43026 - . gene_id "HERVL_18p11.32b"; transcript_id "HERVL_18p11.32b"; locus "HERVL_18p11.32b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1161"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 1860971 1861467 3134 - . gene_id "HERVL_18p11.32b"; transcript_id "HERVL_18p11.32b"; locus "HERVL_18p11.32b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1161"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4B_18p11.32a ### chr18 rmsk gene 1919908 1924269 . - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0428"; model_cov "2883"; model_pct "42.7"; chr18 rmsk exon 1919908 1920657 5592 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 1921509 1921811 5435 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "6313"; repStart "-113"; chr18 rmsk exon 1921887 1922542 5435 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "6312"; repFamily "ERV1"; repLeft "5648"; repStart "-446"; chr18 rmsk exon 1922544 1922798 1291 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "5389"; repFamily "ERV1"; repLeft "5097"; repStart "-1369"; chr18 rmsk exon 1922831 1923314 1675 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "5031"; repFamily "ERV1"; repLeft "4452"; repStart "-1727"; chr18 rmsk exon 1923314 1923833 3197 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3529"; repStart "-2670"; chr18 rmsk exon 1923829 1924269 2078 - . gene_id "MER4B_18p11.32a"; transcript_id "MER4B_18p11.32a"; locus "MER4B_18p11.32a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0428"; repClass "LTR"; repEnd "2245"; repFamily "ERV1"; repLeft "1788"; repStart "-4513"; ### ERVLE_18p11.32 ### chr18 rmsk gene 1933651 1935599 . - . gene_id "ERVLE_18p11.32"; transcript_id "ERVLE_18p11.32"; locus "ERVLE_18p11.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3306"; model_cov "1210"; model_pct "21.4"; chr18 rmsk exon 1933651 1934354 3617 - . gene_id "ERVLE_18p11.32"; transcript_id "ERVLE_18p11.32"; locus "ERVLE_18p11.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3306"; repClass "LTR"; repEnd "4448"; repFamily "ERVL"; repLeft "3761"; repStart "-1219"; chr18 rmsk exon 1934784 1935007 3617 - . gene_id "ERVLE_18p11.32"; transcript_id "ERVLE_18p11.32"; locus "ERVLE_18p11.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3306"; repClass "LTR"; repEnd "3760"; repFamily "ERVL"; repLeft "3522"; repStart "-1907"; chr18 rmsk exon 1935318 1935599 3617 - . gene_id "ERVLE_18p11.32"; transcript_id "ERVLE_18p11.32"; locus "ERVLE_18p11.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3306"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "3236"; repStart "-2146"; ### MER4B_18p11.32b ### chr18 rmsk gene 2157082 2162924 . + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0429"; model_cov "3510"; model_pct "51.9"; chr18 rmsk exon 2157082 2157703 4637 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "2719"; repFamily "ERV1"; repLeft "-4039"; repStart "2073"; chr18 rmsk exon 2158010 2158041 4637 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "2737"; repFamily "ERV1"; repLeft "-4021"; repStart "2720"; chr18 rmsk exon 2158160 2158550 4637 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "3102"; repFamily "ERV1"; repLeft "-3656"; repStart "2738"; chr18 rmsk exon 2158964 2159541 3417 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3478"; chr18 rmsk exon 2159541 2160396 3518 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "5391"; repFamily "ERV1"; repLeft "-1367"; repStart "4452"; chr18 rmsk exon 2160440 2161338 3964 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "-113"; repStart "5711"; chr18 rmsk exon 2162188 2162924 5311 + . gene_id "MER4B_18p11.32b"; transcript_id "MER4B_18p11.32b"; locus "MER4B_18p11.32b"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0429"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_18p11.32d ### chr18 rmsk gene 2469478 2472168 . + . gene_id "ERVLB4_18p11.32d"; transcript_id "ERVLB4_18p11.32d"; locus "ERVLB4_18p11.32d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1606"; model_cov "2095"; model_pct "36.7"; chr18 rmsk exon 2469478 2469532 276 + . gene_id "ERVLB4_18p11.32d"; transcript_id "ERVLB4_18p11.32d"; locus "ERVLB4_18p11.32d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1606"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "-8"; repStart "491"; chr18 rmsk exon 2469951 2472006 12109 + . gene_id "ERVLB4_18p11.32d"; transcript_id "ERVLB4_18p11.32d"; locus "ERVLB4_18p11.32d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1606"; repClass "LTR"; repEnd "4567"; repFamily "ERVL"; repLeft "-1147"; repStart "2472"; chr18 rmsk exon 2472007 2472168 712 + . gene_id "ERVLB4_18p11.32d"; transcript_id "ERVLB4_18p11.32d"; locus "ERVLB4_18p11.32d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1606"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "-257"; repStart "108"; ### ERV316A3_18p11.32d ### chr18 rmsk gene 2625765 2630527 . + . gene_id "ERV316A3_18p11.32d"; transcript_id "ERV316A3_18p11.32d"; locus "ERV316A3_18p11.32d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2523"; model_cov "2336"; model_pct "44.7"; chr18 rmsk exon 2625765 2625956 731 + . gene_id "ERV316A3_18p11.32d"; transcript_id "ERV316A3_18p11.32d"; locus "ERV316A3_18p11.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2523"; repClass "LTR"; repEnd "2085"; repFamily "ERVL"; repLeft "-3141"; repStart "1894"; chr18 rmsk exon 2628042 2628652 3532 + . gene_id "ERV316A3_18p11.32d"; transcript_id "ERV316A3_18p11.32d"; locus "ERV316A3_18p11.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2523"; repClass "LTR"; repEnd "2336"; repFamily "ERVL"; repLeft "-2890"; repStart "1750"; chr18 rmsk exon 2628947 2629645 3532 + . gene_id "ERV316A3_18p11.32d"; transcript_id "ERV316A3_18p11.32d"; locus "ERV316A3_18p11.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2523"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "2337"; chr18 rmsk exon 2629704 2630527 2257 + . gene_id "ERV316A3_18p11.32d"; transcript_id "ERV316A3_18p11.32d"; locus "ERV316A3_18p11.32d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2523"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "-640"; repStart "3717"; ### ERVLB4_18p11.32e ### chr18 rmsk gene 2820906 2822437 . - . gene_id "ERVLB4_18p11.32e"; transcript_id "ERVLB4_18p11.32e"; locus "ERVLB4_18p11.32e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1607"; model_cov "1370"; model_pct "24.0"; chr18 rmsk exon 2820906 2821253 1369 - . gene_id "ERVLB4_18p11.32e"; transcript_id "ERVLB4_18p11.32e"; locus "ERVLB4_18p11.32e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1607"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "223"; repStart "-2"; chr18 rmsk exon 2821374 2822437 3457 - . gene_id "ERVLB4_18p11.32e"; transcript_id "ERVLB4_18p11.32e"; locus "ERVLB4_18p11.32e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1607"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "3856"; repStart "-488"; ### HERVL_18p11.32c ### chr18 rmsk gene 2832568 2839315 . - . gene_id "HERVL_18p11.32c"; transcript_id "HERVL_18p11.32c"; locus "HERVL_18p11.32c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1162"; model_cov "5653"; model_pct "100.0"; chr18 rmsk exon 2832568 2832880 2819 - . gene_id "HERVL_18p11.32c"; transcript_id "HERVL_18p11.32c"; locus "HERVL_18p11.32c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1162"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "99"; repStart "-43"; chr18 rmsk exon 2833176 2833272 2896 - . gene_id "HERVL_18p11.32c"; transcript_id "HERVL_18p11.32c"; locus "HERVL_18p11.32c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1162"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "2"; repStart "-346"; chr18 rmsk exon 2833273 2838897 47120 - . gene_id "HERVL_18p11.32c"; transcript_id "HERVL_18p11.32c"; locus "HERVL_18p11.32c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1162"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 2838898 2839315 3111 - . gene_id "HERVL_18p11.32c"; transcript_id "HERVL_18p11.32c"; locus "HERVL_18p11.32c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1162"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVFRD_18p11.31 ### chr18 rmsk gene 4057062 4062956 . + . gene_id "HERVFRD_18p11.31"; transcript_id "HERVFRD_18p11.31"; locus "HERVFRD_18p11.31"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0165"; model_cov "4660"; model_pct "64.7"; chr18 rmsk exon 4057062 4057772 4421 + . gene_id "HERVFRD_18p11.31"; transcript_id "HERVFRD_18p11.31"; locus "HERVFRD_18p11.31"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0165"; repClass "LTR"; repEnd "709"; repFamily "ERV1"; repLeft "-25"; repStart "3"; chr18 rmsk exon 4057776 4059438 3962 + . gene_id "HERVFRD_18p11.31"; transcript_id "HERVFRD_18p11.31"; locus "HERVFRD_18p11.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0165"; repClass "LTR"; repEnd "1843"; repFamily "ERV1"; repLeft "-5362"; repStart "1"; chr18 rmsk exon 4059748 4062832 12173 + . gene_id "HERVFRD_18p11.31"; transcript_id "HERVFRD_18p11.31"; locus "HERVFRD_18p11.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0165"; repClass "LTR"; repEnd "5172"; repFamily "ERV1"; repLeft "-2033"; repStart "2410"; chr18 rmsk exon 4062900 4062956 438 + . gene_id "HERVFRD_18p11.31"; transcript_id "HERVFRD_18p11.31"; locus "HERVFRD_18p11.31"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0165"; repClass "LTR"; repEnd "6938"; repFamily "ERV1"; repLeft "-267"; repStart "6882"; ### HERVW_18p11.31a ### chr18 rmsk gene 4681680 4683913 . + . gene_id "HERVW_18p11.31a"; transcript_id "HERVW_18p11.31a"; locus "HERVW_18p11.31a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0279"; model_cov "1454"; model_pct "16.9"; chr18 rmsk exon 4681680 4682430 5757 + . gene_id "HERVW_18p11.31a"; transcript_id "HERVW_18p11.31a"; locus "HERVW_18p11.31a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0279"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 4682431 4683913 10360 + . gene_id "HERVW_18p11.31a"; transcript_id "HERVW_18p11.31a"; locus "HERVW_18p11.31a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0279"; repClass "LTR"; repEnd "1455"; repFamily "ERV1"; repLeft "-7171"; repStart "1"; ### HERVW_18p11.31b ### chr18 rmsk gene 4686671 4692409 . + . gene_id "HERVW_18p11.31b"; transcript_id "HERVW_18p11.31b"; locus "HERVW_18p11.31b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0280"; model_cov "5038"; model_pct "58.4"; chr18 rmsk exon 4686671 4687077 3135 + . gene_id "HERVW_18p11.31b"; transcript_id "HERVW_18p11.31b"; locus "HERVW_18p11.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0280"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "-6762"; repStart "1457"; chr18 rmsk exon 4687075 4691411 34536 + . gene_id "HERVW_18p11.31b"; transcript_id "HERVW_18p11.31b"; locus "HERVW_18p11.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0280"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1679"; chr18 rmsk exon 4691434 4691724 2262 + . gene_id "HERVW_18p11.31b"; transcript_id "HERVW_18p11.31b"; locus "HERVW_18p11.31b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0280"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr18 rmsk exon 4691725 4692409 5047 + . gene_id "HERVW_18p11.31b"; transcript_id "HERVW_18p11.31b"; locus "HERVW_18p11.31b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0280"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_18p11.31a ### chr18 rmsk gene 4758365 4762071 . + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2525"; model_cov "2750"; model_pct "52.6"; chr18 rmsk exon 4758365 4758791 857 + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2525"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr18 rmsk exon 4758812 4759525 1744 + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2525"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "-4470"; repStart "26"; chr18 rmsk exon 4759685 4760272 827 + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2525"; repClass "LTR"; repEnd "1856"; repFamily "ERVL"; repLeft "-3370"; repStart "1262"; chr18 rmsk exon 4760268 4761661 3977 + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2525"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-5"; repStart "3795"; chr18 rmsk exon 4761669 4762071 1382 + . gene_id "ERV316A3_18p11.31a"; transcript_id "ERV316A3_18p11.31a"; locus "ERV316A3_18p11.31a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2525"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-27"; repStart "3"; ### ERV316A3_18p11.31b ### chr18 rmsk gene 5018168 5019945 . - . gene_id "ERV316A3_18p11.31b"; transcript_id "ERV316A3_18p11.31b"; locus "ERV316A3_18p11.31b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2526"; model_cov "654"; model_pct "12.5"; chr18 rmsk exon 5018168 5018515 976 - . gene_id "ERV316A3_18p11.31b"; transcript_id "ERV316A3_18p11.31b"; locus "ERV316A3_18p11.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2526"; repClass "LTR"; repEnd "3290"; repFamily "ERVL"; repLeft "2965"; repStart "-1936"; chr18 rmsk exon 5019293 5019489 976 - . gene_id "ERV316A3_18p11.31b"; transcript_id "ERV316A3_18p11.31b"; locus "ERV316A3_18p11.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2526"; repClass "LTR"; repEnd "2964"; repFamily "ERVL"; repLeft "2794"; repStart "-2262"; chr18 rmsk exon 5019789 5019945 976 - . gene_id "ERV316A3_18p11.31b"; transcript_id "ERV316A3_18p11.31b"; locus "ERV316A3_18p11.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2526"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "2634"; repStart "-2433"; ### ERVLE_18p11.31a ### chr18 rmsk gene 5336061 5337959 . - . gene_id "ERVLE_18p11.31a"; transcript_id "ERVLE_18p11.31a"; locus "ERVLE_18p11.31a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3307"; model_cov "1504"; model_pct "26.5"; chr18 rmsk exon 5336061 5337483 4368 - . gene_id "ERVLE_18p11.31a"; transcript_id "ERVLE_18p11.31a"; locus "ERVLE_18p11.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3307"; repClass "LTR"; repEnd "1462"; repFamily "ERVL"; repLeft "-42"; repStart "-4205"; chr18 rmsk exon 5337651 5337959 1701 - . gene_id "ERVLE_18p11.31a"; transcript_id "ERVLE_18p11.31a"; locus "ERVLE_18p11.31a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3307"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "3"; repStart "-100"; ### ERVLE_18p11.31b ### chr18 rmsk gene 5341169 5342401 . + . gene_id "ERVLE_18p11.31b"; transcript_id "ERVLE_18p11.31b"; locus "ERVLE_18p11.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3308"; model_cov "1272"; model_pct "22.4"; chr18 rmsk exon 5341169 5342401 3062 + . gene_id "ERVLE_18p11.31b"; transcript_id "ERVLE_18p11.31b"; locus "ERVLE_18p11.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3308"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "-446"; repStart "3949"; ### MER41_18p11.31 ### chr18 rmsk gene 5861768 5865635 . + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0496"; model_cov "1009"; model_pct "17.0"; chr18 rmsk exon 5861768 5861858 1012 + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0496"; repClass "LTR"; repEnd "571"; repFamily "ERV1"; repLeft "-63"; repStart "481"; chr18 rmsk exon 5862166 5862237 1012 + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0496"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "572"; chr18 rmsk exon 5862238 5862328 407 + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0496"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chr18 rmsk exon 5862328 5862412 625 + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0496"; repClass "LTR"; repEnd "2716"; repFamily "ERV1"; repLeft "-3230"; repStart "2632"; chr18 rmsk exon 5864818 5865635 5258 + . gene_id "MER41_18p11.31"; transcript_id "MER41_18p11.31"; locus "MER41_18p11.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0496"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "-2373"; repStart "2735"; ### ERVLE_18p11.31c ### chr18 rmsk gene 5876899 5878218 . + . gene_id "ERVLE_18p11.31c"; transcript_id "ERVLE_18p11.31c"; locus "ERVLE_18p11.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3309"; model_cov "1123"; model_pct "19.8"; chr18 rmsk exon 5876899 5876946 296 + . gene_id "ERVLE_18p11.31c"; transcript_id "ERVLE_18p11.31c"; locus "ERVLE_18p11.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3309"; repClass "LTR"; repEnd "4075"; repFamily "ERVL"; repLeft "-1592"; repStart "4028"; chr18 rmsk exon 5876969 5877835 3933 + . gene_id "ERVLE_18p11.31c"; transcript_id "ERVLE_18p11.31c"; locus "ERVLE_18p11.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3309"; repClass "LTR"; repEnd "5144"; repFamily "ERVL"; repLeft "-523"; repStart "4229"; chr18 rmsk exon 5878058 5878218 797 + . gene_id "ERVLE_18p11.31c"; transcript_id "ERVLE_18p11.31c"; locus "ERVLE_18p11.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3309"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "5506"; ### MER101_18p11.31 ### chr18 rmsk gene 6289009 6289913 . + . gene_id "MER101_18p11.31"; transcript_id "MER101_18p11.31"; locus "MER101_18p11.31"; category "internal"; intModel "MER101-int"; locid "MER101-int_0370"; model_cov "1616"; model_pct "24.3"; chr18 rmsk exon 6289009 6289913 2253 + . gene_id "MER101_18p11.31"; transcript_id "MER101_18p11.31"; locus "MER101_18p11.31"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0370"; repClass "LTR"; repEnd "3860"; repFamily "ERV1"; repLeft "-2779"; repStart "2244"; ### ERV316A3_18p11.31c ### chr18 rmsk gene 6475053 6477072 . - . gene_id "ERV316A3_18p11.31c"; transcript_id "ERV316A3_18p11.31c"; locus "ERV316A3_18p11.31c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2527"; model_cov "1398"; model_pct "26.8"; chr18 rmsk exon 6475053 6475441 937 - . gene_id "ERV316A3_18p11.31c"; transcript_id "ERV316A3_18p11.31c"; locus "ERV316A3_18p11.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2527"; repClass "LTR"; repEnd "1656"; repFamily "ERVL"; repLeft "1256"; repStart "-3570"; chr18 rmsk exon 6475573 6476079 2292 - . gene_id "ERV316A3_18p11.31c"; transcript_id "ERV316A3_18p11.31c"; locus "ERV316A3_18p11.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2527"; repClass "LTR"; repEnd "1026"; repFamily "ERVL"; repLeft "508"; repStart "-4200"; chr18 rmsk exon 6476302 6476774 2292 - . gene_id "ERV316A3_18p11.31c"; transcript_id "ERV316A3_18p11.31c"; locus "ERV316A3_18p11.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2527"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "27"; repStart "-4719"; chr18 rmsk exon 6476862 6477072 628 - . gene_id "ERV316A3_18p11.31c"; transcript_id "ERV316A3_18p11.31c"; locus "ERV316A3_18p11.31c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2527"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "235"; repStart "0"; ### ERV316A3_18p11.31d ### chr18 rmsk gene 6671882 6674742 . - . gene_id "ERV316A3_18p11.31d"; transcript_id "ERV316A3_18p11.31d"; locus "ERV316A3_18p11.31d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2528"; model_cov "2102"; model_pct "40.2"; chr18 rmsk exon 6671882 6673685 1706 - . gene_id "ERV316A3_18p11.31d"; transcript_id "ERV316A3_18p11.31d"; locus "ERV316A3_18p11.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2528"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "333"; repStart "-3004"; chr18 rmsk exon 6674154 6674357 1667 - . gene_id "ERV316A3_18p11.31d"; transcript_id "ERV316A3_18p11.31d"; locus "ERV316A3_18p11.31d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2528"; repClass "LTR"; repEnd "562"; repFamily "ERVL"; repLeft "349"; repStart "-4664"; chr18 rmsk exon 6674468 6674742 1003 - . gene_id "ERV316A3_18p11.31d"; transcript_id "ERV316A3_18p11.31d"; locus "ERV316A3_18p11.31d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2528"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "162"; repStart "-2"; ### ERVLE_18p11.23 ### chr18 rmsk gene 7374028 7376134 . - . gene_id "ERVLE_18p11.23"; transcript_id "ERVLE_18p11.23"; locus "ERVLE_18p11.23"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3310"; model_cov "1467"; model_pct "25.9"; chr18 rmsk exon 7374028 7374197 3122 - . gene_id "ERVLE_18p11.23"; transcript_id "ERVLE_18p11.23"; locus "ERVLE_18p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3310"; repClass "LTR"; repEnd "1474"; repFamily "ERVL"; repLeft "1308"; repStart "-4193"; chr18 rmsk exon 7374557 7374616 3122 - . gene_id "ERVLE_18p11.23"; transcript_id "ERVLE_18p11.23"; locus "ERVLE_18p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3310"; repClass "LTR"; repEnd "1307"; repFamily "ERVL"; repLeft "1253"; repStart "-4360"; chr18 rmsk exon 7374927 7376134 3122 - . gene_id "ERVLE_18p11.23"; transcript_id "ERVLE_18p11.23"; locus "ERVLE_18p11.23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3310"; repClass "LTR"; repEnd "1252"; repFamily "ERVL"; repLeft "5"; repStart "-4415"; ### HERVL_18p11.23 ### chr18 rmsk gene 7535650 7537310 . - . gene_id "HERVL_18p11.23"; transcript_id "HERVL_18p11.23"; locus "HERVL_18p11.23"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1164"; model_cov "1098"; model_pct "19.4"; chr18 rmsk exon 7535650 7536219 1980 - . gene_id "HERVL_18p11.23"; transcript_id "HERVL_18p11.23"; locus "HERVL_18p11.23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1164"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr18 rmsk exon 7536220 7537310 8333 - . gene_id "HERVL_18p11.23"; transcript_id "HERVL_18p11.23"; locus "HERVL_18p11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1164"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4556"; repStart "0"; ### HERVFRD_18p11.23 ### chr18 rmsk gene 8177580 8180999 . - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0166"; model_cov "1537"; model_pct "21.3"; chr18 rmsk exon 8177580 8178115 3403 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0166"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "175"; repStart "-24"; chr18 rmsk exon 8178116 8178501 6132 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0166"; repClass "LTR"; repEnd "6099"; repFamily "ERV1"; repLeft "5725"; repStart "-1106"; chr18 rmsk exon 8178816 8179459 6132 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0166"; repClass "LTR"; repEnd "5724"; repFamily "ERV1"; repLeft "5061"; repStart "-1481"; chr18 rmsk exon 8179768 8180013 2127 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0166"; repClass "LTR"; repEnd "3857"; repFamily "ERV1"; repLeft "3612"; repStart "-3348"; chr18 rmsk exon 8180024 8180239 1309 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0166"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "1"; repStart "-6991"; chr18 rmsk exon 8180240 8180282 339 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0166"; repClass "LTR"; repEnd "44"; repFamily "ERV1"; repLeft "2"; repStart "-7161"; chr18 rmsk exon 8180285 8180999 4456 - . gene_id "HERVFRD_18p11.23"; transcript_id "HERVFRD_18p11.23"; locus "HERVFRD_18p11.23"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0166"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### ERVLB4_18p11.22 ### chr18 rmsk gene 8581528 8583649 . - . gene_id "ERVLB4_18p11.22"; transcript_id "ERVLB4_18p11.22"; locus "ERVLB4_18p11.22"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1608"; model_cov "1589"; model_pct "27.8"; chr18 rmsk exon 8581528 8581660 965 - . gene_id "ERVLB4_18p11.22"; transcript_id "ERVLB4_18p11.22"; locus "ERVLB4_18p11.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1608"; repClass "LTR"; repEnd "3860"; repFamily "ERVL"; repLeft "3727"; repStart "-1854"; chr18 rmsk exon 8581991 8582457 965 - . gene_id "ERVLB4_18p11.22"; transcript_id "ERVLB4_18p11.22"; locus "ERVLB4_18p11.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1608"; repClass "LTR"; repEnd "3726"; repFamily "ERVL"; repLeft "3216"; repStart "-1988"; chr18 rmsk exon 8582447 8582595 1754 - . gene_id "ERVLB4_18p11.22"; transcript_id "ERVLB4_18p11.22"; locus "ERVLB4_18p11.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1608"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "3037"; repStart "-2514"; chr18 rmsk exon 8582895 8583649 1754 - . gene_id "ERVLB4_18p11.22"; transcript_id "ERVLB4_18p11.22"; locus "ERVLB4_18p11.22"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1608"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "2253"; repStart "-2678"; ### HERVIP10FH_18p11.22 ### chr18 rmsk gene 8876837 8883319 . - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0161"; model_cov "8296"; model_pct "100.0"; chr18 rmsk exon 8876837 8877337 3638 - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0161"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr18 rmsk exon 8877339 8881515 20968 - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0161"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-1948"; repStart "-2"; chr18 rmsk exon 8881493 8882638 8295 - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0161"; repClass "LTR"; repEnd "-1207"; repFamily "ERV1"; repLeft "-2295"; repStart "-6309"; chr18 rmsk exon 8882638 8882793 1080 - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0161"; repClass "LTR"; repEnd "161"; repFamily "ERV1"; repLeft "1"; repStart "-4941"; chr18 rmsk exon 8882794 8883319 3444 - . gene_id "HERVIP10FH_18p11.22"; transcript_id "HERVIP10FH_18p11.22"; locus "HERVIP10FH_18p11.22"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0161"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_18p11.22 ### chr18 rmsk gene 8907608 8910778 . + . gene_id "MER41_18p11.22"; transcript_id "MER41_18p11.22"; locus "MER41_18p11.22"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0498"; model_cov "2284"; model_pct "38.4"; chr18 rmsk exon 8907608 8908370 14683 + . gene_id "MER41_18p11.22"; transcript_id "MER41_18p11.22"; locus "MER41_18p11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0498"; repClass "LTR"; repEnd "4404"; repFamily "ERV1"; repLeft "-1542"; repStart "3661"; chr18 rmsk exon 8908670 8910234 14683 + . gene_id "MER41_18p11.22"; transcript_id "MER41_18p11.22"; locus "MER41_18p11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0498"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4405"; chr18 rmsk exon 8910235 8910778 3039 + . gene_id "MER41_18p11.22"; transcript_id "MER41_18p11.22"; locus "MER41_18p11.22"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0498"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### HARLEQUIN_18p11.22a ### chr18 rmsk gene 8913647 8921365 . + . gene_id "HARLEQUIN_18p11.22a"; transcript_id "HARLEQUIN_18p11.22a"; locus "HARLEQUIN_18p11.22a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0156"; model_cov "6895"; model_pct "100.0"; chr18 rmsk exon 8913647 8914109 3989 + . gene_id "HARLEQUIN_18p11.22a"; transcript_id "HARLEQUIN_18p11.22a"; locus "HARLEQUIN_18p11.22a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0156"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 8914110 8920902 54082 + . gene_id "HARLEQUIN_18p11.22a"; transcript_id "HARLEQUIN_18p11.22a"; locus "HARLEQUIN_18p11.22a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0156"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 8920903 8921365 4041 + . gene_id "HARLEQUIN_18p11.22a"; transcript_id "HARLEQUIN_18p11.22a"; locus "HARLEQUIN_18p11.22a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0156"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_18p11.22 ### chr18 rmsk gene 9421990 9426214 . - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1118"; model_cov "3528"; model_pct "45.7"; chr18 rmsk exon 9421990 9422413 2179 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 9422414 9422723 3630 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7410"; repStart "0"; chr18 rmsk exon 9423228 9423458 3630 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "7409"; repFamily "ERV1"; repLeft "7173"; repStart "-304"; chr18 rmsk exon 9423460 9423518 268 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7663"; repStart "0"; chr18 rmsk exon 9423513 9423987 2653 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6489"; repStart "-765"; chr18 rmsk exon 9423988 9426214 10480 - . gene_id "HERVH_18p11.22"; transcript_id "HERVH_18p11.22"; locus "HERVH_18p11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1118"; repClass "LTR"; repEnd "5928"; repFamily "ERV1"; repLeft "3448"; repStart "-1785"; ### ERV316A3_18p11.22a ### chr18 rmsk gene 9456917 9459157 . - . gene_id "ERV316A3_18p11.22a"; transcript_id "ERV316A3_18p11.22a"; locus "ERV316A3_18p11.22a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2531"; model_cov "1642"; model_pct "31.4"; chr18 rmsk exon 9456917 9458578 4238 - . gene_id "ERV316A3_18p11.22a"; transcript_id "ERV316A3_18p11.22a"; locus "ERV316A3_18p11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2531"; repClass "LTR"; repEnd "1648"; repFamily "ERVL"; repLeft "6"; repStart "-3578"; chr18 rmsk exon 9458582 9458759 439 - . gene_id "ERV316A3_18p11.22a"; transcript_id "ERV316A3_18p11.22a"; locus "ERV316A3_18p11.22a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2531"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "287"; repStart "-2"; chr18 rmsk exon 9458842 9459157 1211 - . gene_id "ERV316A3_18p11.22a"; transcript_id "ERV316A3_18p11.22a"; locus "ERV316A3_18p11.22a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2531"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "1"; repStart "-151"; ### ERV316A3_18p11.22b ### chr18 rmsk gene 9904937 9906052 . + . gene_id "ERV316A3_18p11.22b"; transcript_id "ERV316A3_18p11.22b"; locus "ERV316A3_18p11.22b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2532"; model_cov "1182"; model_pct "22.6"; chr18 rmsk exon 9904937 9906052 2500 + . gene_id "ERV316A3_18p11.22b"; transcript_id "ERV316A3_18p11.22b"; locus "ERV316A3_18p11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2532"; repClass "LTR"; repEnd "2801"; repFamily "ERVL"; repLeft "-2425"; repStart "1619"; ### ERVLE_18p11.22 ### chr18 rmsk gene 10094867 10096787 . + . gene_id "ERVLE_18p11.22"; transcript_id "ERVLE_18p11.22"; locus "ERVLE_18p11.22"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3312"; model_cov "2027"; model_pct "35.8"; chr18 rmsk exon 10094867 10096649 7617 + . gene_id "ERVLE_18p11.22"; transcript_id "ERVLE_18p11.22"; locus "ERVLE_18p11.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3312"; repClass "LTR"; repEnd "3638"; repFamily "ERVL"; repLeft "-2029"; repStart "1776"; chr18 rmsk exon 10096623 10096787 853 + . gene_id "ERVLE_18p11.22"; transcript_id "ERVLE_18p11.22"; locus "ERVLE_18p11.22"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3312"; repClass "LTR"; repEnd "5642"; repFamily "ERVL"; repLeft "-25"; repStart "5477"; ### ERV316A3_18p11.22c ### chr18 rmsk gene 10147107 10148117 . - . gene_id "ERV316A3_18p11.22c"; transcript_id "ERV316A3_18p11.22c"; locus "ERV316A3_18p11.22c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2534"; model_cov "686"; model_pct "13.1"; chr18 rmsk exon 10147107 10147437 389 - . gene_id "ERV316A3_18p11.22c"; transcript_id "ERV316A3_18p11.22c"; locus "ERV316A3_18p11.22c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2534"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "35"; repStart "-5"; chr18 rmsk exon 10147467 10148117 1647 - . gene_id "ERV316A3_18p11.22c"; transcript_id "ERV316A3_18p11.22c"; locus "ERV316A3_18p11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2534"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4540"; repStart "0"; ### HML3_18p11.22 ### chr18 rmsk gene 10219927 10225971 . - . gene_id "HML3_18p11.22"; transcript_id "HML3_18p11.22"; locus "HML3_18p11.22"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0210"; model_cov "5076"; model_pct "84.3"; chr18 rmsk exon 10219927 10220415 3851 - . gene_id "HML3_18p11.22"; transcript_id "HML3_18p11.22"; locus "HML3_18p11.22"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0210"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "4"; repStart "0"; chr18 rmsk exon 10220419 10224810 28516 - . gene_id "HML3_18p11.22"; transcript_id "HML3_18p11.22"; locus "HML3_18p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0210"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1637"; repStart "0"; chr18 rmsk exon 10224796 10225480 5082 - . gene_id "HML3_18p11.22"; transcript_id "HML3_18p11.22"; locus "HML3_18p11.22"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0210"; repClass "LTR"; repEnd "693"; repFamily "ERVK"; repLeft "1"; repStart "-5328"; chr18 rmsk exon 10225481 10225971 3715 - . gene_id "HML3_18p11.22"; transcript_id "HML3_18p11.22"; locus "HML3_18p11.22"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0210"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_18p11.22b ### chr18 rmsk gene 10599605 10604201 . - . gene_id "HARLEQUIN_18p11.22b"; transcript_id "HARLEQUIN_18p11.22b"; locus "HARLEQUIN_18p11.22b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0157"; model_cov "4009"; model_pct "58.1"; chr18 rmsk exon 10599605 10602698 24738 - . gene_id "HARLEQUIN_18p11.22b"; transcript_id "HARLEQUIN_18p11.22b"; locus "HARLEQUIN_18p11.22b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0157"; repClass "LTR"; repEnd "5126"; repFamily "ERV1"; repLeft "2053"; repStart "-1770"; chr18 rmsk exon 10602685 10602793 6705 - . gene_id "HARLEQUIN_18p11.22b"; transcript_id "HARLEQUIN_18p11.22b"; locus "HARLEQUIN_18p11.22b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0157"; repClass "LTR"; repEnd "939"; repFamily "ERV1"; repLeft "864"; repStart "-5957"; chr18 rmsk exon 10602879 10603735 6705 - . gene_id "HARLEQUIN_18p11.22b"; transcript_id "HARLEQUIN_18p11.22b"; locus "HARLEQUIN_18p11.22b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0157"; repClass "LTR"; repEnd "863"; repFamily "ERV1"; repLeft "2"; repStart "-6033"; chr18 rmsk exon 10603736 10604201 3795 - . gene_id "HARLEQUIN_18p11.22b"; transcript_id "HARLEQUIN_18p11.22b"; locus "HARLEQUIN_18p11.22b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0157"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_18p11.21a ### chr18 rmsk gene 11127309 11133941 . + . gene_id "HERVL_18p11.21a"; transcript_id "HERVL_18p11.21a"; locus "HERVL_18p11.21a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1165"; model_cov "5653"; model_pct "100.0"; chr18 rmsk exon 11127309 11127695 2903 + . gene_id "HERVL_18p11.21a"; transcript_id "HERVL_18p11.21a"; locus "HERVL_18p11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1165"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr18 rmsk exon 11127866 11133402 33280 + . gene_id "HERVL_18p11.21a"; transcript_id "HERVL_18p11.21a"; locus "HERVL_18p11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1165"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 11133403 11133823 2836 + . gene_id "HERVL_18p11.21a"; transcript_id "HERVL_18p11.21a"; locus "HERVL_18p11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1165"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-52"; repStart "-110"; chr18 rmsk exon 11133852 11133941 309 + . gene_id "HERVL_18p11.21a"; transcript_id "HERVL_18p11.21a"; locus "HERVL_18p11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1165"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "373"; ### ERVLB4_18p11.21a ### chr18 rmsk gene 11139738 11140659 . - . gene_id "ERVLB4_18p11.21a"; transcript_id "ERVLB4_18p11.21a"; locus "ERVLB4_18p11.21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1609"; model_cov "1005"; model_pct "17.6"; chr18 rmsk exon 11139738 11140659 3409 - . gene_id "ERVLB4_18p11.21a"; transcript_id "ERVLB4_18p11.21a"; locus "ERVLB4_18p11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1609"; repClass "LTR"; repEnd "1796"; repFamily "ERVL"; repLeft "791"; repStart "-3918"; ### ERV316A3_18p11.21a ### chr18 rmsk gene 11211079 11211755 . - . gene_id "ERV316A3_18p11.21a"; transcript_id "ERV316A3_18p11.21a"; locus "ERV316A3_18p11.21a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2535"; model_cov "810"; model_pct "15.5"; chr18 rmsk exon 11211079 11211755 1297 - . gene_id "ERV316A3_18p11.21a"; transcript_id "ERV316A3_18p11.21a"; locus "ERV316A3_18p11.21a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2535"; repClass "LTR"; repEnd "2889"; repFamily "ERVL"; repLeft "2079"; repStart "-2337"; ### ERVLE_18p11.21a ### chr18 rmsk gene 11401383 11402233 . + . gene_id "ERVLE_18p11.21a"; transcript_id "ERVLE_18p11.21a"; locus "ERVLE_18p11.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3313"; model_cov "604"; model_pct "10.7"; chr18 rmsk exon 11401383 11401822 1088 + . gene_id "ERVLE_18p11.21a"; transcript_id "ERVLE_18p11.21a"; locus "ERVLE_18p11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3313"; repClass "LTR"; repEnd "2779"; repFamily "ERVL"; repLeft "-2888"; repStart "2346"; chr18 rmsk exon 11402064 11402233 462 + . gene_id "ERVLE_18p11.21a"; transcript_id "ERVLE_18p11.21a"; locus "ERVLE_18p11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3313"; repClass "LTR"; repEnd "3352"; repFamily "ERVL"; repLeft "-2315"; repStart "3181"; ### ERV316A3_18p11.21b ### chr18 rmsk gene 11527168 11529434 . + . gene_id "ERV316A3_18p11.21b"; transcript_id "ERV316A3_18p11.21b"; locus "ERV316A3_18p11.21b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2537"; model_cov "942"; model_pct "18.0"; chr18 rmsk exon 11527168 11527573 631 + . gene_id "ERV316A3_18p11.21b"; transcript_id "ERV316A3_18p11.21b"; locus "ERV316A3_18p11.21b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2537"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 11528023 11528352 443 + . gene_id "ERV316A3_18p11.21b"; transcript_id "ERV316A3_18p11.21b"; locus "ERV316A3_18p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2537"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "-4411"; repStart "490"; chr18 rmsk exon 11528807 11529131 674 + . gene_id "ERV316A3_18p11.21b"; transcript_id "ERV316A3_18p11.21b"; locus "ERV316A3_18p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2537"; repClass "LTR"; repEnd "1178"; repFamily "ERVL"; repLeft "-4048"; repStart "820"; chr18 rmsk exon 11529174 11529434 659 + . gene_id "ERV316A3_18p11.21b"; transcript_id "ERV316A3_18p11.21b"; locus "ERV316A3_18p11.21b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2537"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-921"; repStart "4046"; ### MER41_18p11.21 ### chr18 rmsk gene 11538436 11541243 . + . gene_id "MER41_18p11.21"; transcript_id "MER41_18p11.21"; locus "MER41_18p11.21"; category "internal"; intModel "MER41-int"; locid "MER41-int_0499"; model_cov "2094"; model_pct "35.2"; chr18 rmsk exon 11538436 11539556 7358 + . gene_id "MER41_18p11.21"; transcript_id "MER41_18p11.21"; locus "MER41_18p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0499"; repClass "LTR"; repEnd "4480"; repFamily "ERV1"; repLeft "-1466"; repStart "3326"; chr18 rmsk exon 11539841 11540532 7358 + . gene_id "MER41_18p11.21"; transcript_id "MER41_18p11.21"; locus "MER41_18p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0499"; repClass "LTR"; repEnd "5201"; repFamily "ERV1"; repLeft "-745"; repStart "4481"; chr18 rmsk exon 11540831 11541243 7358 + . gene_id "MER41_18p11.21"; transcript_id "MER41_18p11.21"; locus "MER41_18p11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0499"; repClass "LTR"; repEnd "5422"; repFamily "ERV1"; repLeft "-524"; repStart "5202"; ### HERV3_18p11.21 ### chr18 rmsk gene 11544677 11551816 . - . gene_id "HERV3_18p11.21"; transcript_id "HERV3_18p11.21"; locus "HERV3_18p11.21"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0060"; model_cov "7219"; model_pct "85.7"; chr18 rmsk exon 11544677 11551816 33747 - . gene_id "HERV3_18p11.21"; transcript_id "HERV3_18p11.21"; locus "HERV3_18p11.21"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0060"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "1207"; repStart "0"; ### HERVFRD_18p11.21 ### chr18 rmsk gene 11584747 11586576 . + . gene_id "HERVFRD_18p11.21"; transcript_id "HERVFRD_18p11.21"; locus "HERVFRD_18p11.21"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0167"; model_cov "815"; model_pct "11.3"; chr18 rmsk exon 11584747 11585580 5478 + . gene_id "HERVFRD_18p11.21"; transcript_id "HERVFRD_18p11.21"; locus "HERVFRD_18p11.21"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0167"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6382"; chr18 rmsk exon 11585581 11586034 3948 + . gene_id "HERVFRD_18p11.21"; transcript_id "HERVFRD_18p11.21"; locus "HERVFRD_18p11.21"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0167"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "-249"; repStart "1"; chr18 rmsk exon 11586351 11586576 3948 + . gene_id "HERVFRD_18p11.21"; transcript_id "HERVFRD_18p11.21"; locus "HERVFRD_18p11.21"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0167"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "-28"; repStart "486"; ### MER101_18p11.21 ### chr18 rmsk gene 11641518 11642615 . + . gene_id "MER101_18p11.21"; transcript_id "MER101_18p11.21"; locus "MER101_18p11.21"; category "internal"; intModel "MER101-int"; locid "MER101-int_0372"; model_cov "811"; model_pct "12.2"; chr18 rmsk exon 11641518 11641580 404 + . gene_id "MER101_18p11.21"; transcript_id "MER101_18p11.21"; locus "MER101_18p11.21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0372"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr18 rmsk exon 11641572 11642060 1585 + . gene_id "MER101_18p11.21"; transcript_id "MER101_18p11.21"; locus "MER101_18p11.21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0372"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "-2853"; repStart "3298"; chr18 rmsk exon 11642064 11642093 958 + . gene_id "MER101_18p11.21"; transcript_id "MER101_18p11.21"; locus "MER101_18p11.21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0372"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3665"; chr18 rmsk exon 11642384 11642615 958 + . gene_id "MER101_18p11.21"; transcript_id "MER101_18p11.21"; locus "MER101_18p11.21"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0372"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### ERVLB4_18p11.21b ### chr18 rmsk gene 11724413 11725129 . - . gene_id "ERVLB4_18p11.21b"; transcript_id "ERVLB4_18p11.21b"; locus "ERVLB4_18p11.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1611"; model_cov "743"; model_pct "13.0"; chr18 rmsk exon 11724413 11725129 4147 - . gene_id "ERVLB4_18p11.21b"; transcript_id "ERVLB4_18p11.21b"; locus "ERVLB4_18p11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1611"; repClass "LTR"; repEnd "3745"; repFamily "ERVL"; repLeft "3002"; repStart "-1969"; ### ERVLB4_18p11.21c ### chr18 rmsk gene 12567512 12568263 . - . gene_id "ERVLB4_18p11.21c"; transcript_id "ERVLB4_18p11.21c"; locus "ERVLB4_18p11.21c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1612"; model_cov "767"; model_pct "13.4"; chr18 rmsk exon 12567512 12568263 4479 - . gene_id "ERVLB4_18p11.21c"; transcript_id "ERVLB4_18p11.21c"; locus "ERVLB4_18p11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1612"; repClass "LTR"; repEnd "2011"; repFamily "ERVL"; repLeft "1244"; repStart "-3703"; ### HERVL_18p11.21b ### chr18 rmsk gene 12753988 12759577 . - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1167"; model_cov "4334"; model_pct "76.7"; chr18 rmsk exon 12753988 12754418 3047 - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1167"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 12754419 12755970 34453 - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1167"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4042"; repStart "0"; chr18 rmsk exon 12756230 12756267 34453 - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1167"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "4025"; repStart "-1613"; chr18 rmsk exon 12756563 12757695 34453 - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1167"; repClass "LTR"; repEnd "4024"; repFamily "ERVL"; repLeft "2899"; repStart "-1630"; chr18 rmsk exon 12758006 12759577 34453 - . gene_id "HERVL_18p11.21b"; transcript_id "HERVL_18p11.21b"; locus "HERVL_18p11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1167"; repClass "LTR"; repEnd "2898"; repFamily "ERVL"; repLeft "1317"; repStart "-2756"; ### ERVLE_18p11.21b ### chr18 rmsk gene 12766939 12770774 . + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3314"; model_cov "3195"; model_pct "56.4"; chr18 rmsk exon 12766939 12767460 785 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chr18 rmsk exon 12767464 12767582 508 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "75"; repFamily "ERVL"; repLeft "-5592"; repStart "-46"; chr18 rmsk exon 12767881 12767907 508 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "-5572"; repStart "76"; chr18 rmsk exon 12767884 12768178 1095 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "693"; repFamily "ERVL"; repLeft "-4974"; repStart "399"; chr18 rmsk exon 12768167 12768275 403 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "857"; repFamily "ERVL"; repLeft "-4810"; repStart "746"; chr18 rmsk exon 12768273 12769946 3391 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "2653"; repFamily "ERVL"; repLeft "-3014"; repStart "817"; chr18 rmsk exon 12770027 12770774 3256 + . gene_id "ERVLE_18p11.21b"; transcript_id "ERVLE_18p11.21b"; locus "ERVLE_18p11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3314"; repClass "LTR"; repEnd "3552"; repFamily "ERVL"; repLeft "-2115"; repStart "2738"; ### ERVLE_18p11.21c ### chr18 rmsk gene 12899143 12901945 . + . gene_id "ERVLE_18p11.21c"; transcript_id "ERVLE_18p11.21c"; locus "ERVLE_18p11.21c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3315"; model_cov "2105"; model_pct "37.1"; chr18 rmsk exon 12899143 12900349 2069 + . gene_id "ERVLE_18p11.21c"; transcript_id "ERVLE_18p11.21c"; locus "ERVLE_18p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3315"; repClass "LTR"; repEnd "2376"; repFamily "ERVL"; repLeft "-3291"; repStart "1035"; chr18 rmsk exon 12900956 12901381 2069 + . gene_id "ERVLE_18p11.21c"; transcript_id "ERVLE_18p11.21c"; locus "ERVLE_18p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3315"; repClass "LTR"; repEnd "2781"; repFamily "ERVL"; repLeft "-2886"; repStart "2382"; chr18 rmsk exon 12901689 12901945 2069 + . gene_id "ERVLE_18p11.21c"; transcript_id "ERVLE_18p11.21c"; locus "ERVLE_18p11.21c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3315"; repClass "LTR"; repEnd "3039"; repFamily "ERVL"; repLeft "-2628"; repStart "2674"; ### ERVLB4_18p11.21d ### chr18 rmsk gene 12934879 12940618 . - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1613"; model_cov "4154"; model_pct "72.7"; chr18 rmsk exon 12934879 12935276 1840 - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1613"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "73"; repStart "0"; chr18 rmsk exon 12935595 12936555 10511 - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1613"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4694"; repStart "0"; chr18 rmsk exon 12936865 12938045 10511 - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1613"; repClass "LTR"; repEnd "4693"; repFamily "ERVL"; repLeft "3527"; repStart "-1021"; chr18 rmsk exon 12938042 12938486 14545 - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1613"; repClass "LTR"; repEnd "3067"; repFamily "ERVL"; repLeft "2618"; repStart "-2647"; chr18 rmsk exon 12939187 12940618 14545 - . gene_id "ERVLB4_18p11.21d"; transcript_id "ERVLB4_18p11.21d"; locus "ERVLB4_18p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1613"; repClass "LTR"; repEnd "2617"; repFamily "ERVL"; repLeft "1098"; repStart "-3097"; ### ERVLB4_18p11.21e ### chr18 rmsk gene 12940660 12942421 . - . gene_id "ERVLB4_18p11.21e"; transcript_id "ERVLB4_18p11.21e"; locus "ERVLB4_18p11.21e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1614"; model_cov "1071"; model_pct "18.7"; chr18 rmsk exon 12940660 12941302 14545 - . gene_id "ERVLB4_18p11.21e"; transcript_id "ERVLB4_18p11.21e"; locus "ERVLB4_18p11.21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1614"; repClass "LTR"; repEnd "2617"; repFamily "ERVL"; repLeft "1934"; repStart "-3097"; chr18 rmsk exon 12941337 12941716 14545 - . gene_id "ERVLB4_18p11.21e"; transcript_id "ERVLB4_18p11.21e"; locus "ERVLB4_18p11.21e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1614"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "25"; repStart "-5301"; chr18 rmsk exon 12942064 12942421 2128 - . gene_id "ERVLB4_18p11.21e"; transcript_id "ERVLB4_18p11.21e"; locus "ERVLB4_18p11.21e"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1614"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "124"; repStart "0"; ### ERVLE_18p11.21d ### chr18 rmsk gene 13720054 13723317 . - . gene_id "ERVLE_18p11.21d"; transcript_id "ERVLE_18p11.21d"; locus "ERVLE_18p11.21d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3316"; model_cov "2776"; model_pct "49.0"; chr18 rmsk exon 13720054 13720698 9325 - . gene_id "ERVLE_18p11.21d"; transcript_id "ERVLE_18p11.21d"; locus "ERVLE_18p11.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3316"; repClass "LTR"; repEnd "3310"; repFamily "ERVL"; repLeft "2611"; repStart "-2357"; chr18 rmsk exon 13721143 13722415 9325 - . gene_id "ERVLE_18p11.21d"; transcript_id "ERVLE_18p11.21d"; locus "ERVLE_18p11.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3316"; repClass "LTR"; repEnd "2610"; repFamily "ERVL"; repLeft "1306"; repStart "-3057"; chr18 rmsk exon 13722408 13722832 1881 - . gene_id "ERVLE_18p11.21d"; transcript_id "ERVLE_18p11.21d"; locus "ERVLE_18p11.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3316"; repClass "LTR"; repEnd "753"; repFamily "ERVL"; repLeft "323"; repStart "-4914"; chr18 rmsk exon 13722982 13723317 1472 - . gene_id "ERVLE_18p11.21d"; transcript_id "ERVLE_18p11.21d"; locus "ERVLE_18p11.21d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3316"; repClass "LTR"; repEnd "298"; repFamily "ERVL"; repLeft "-45"; repStart "-5369"; ### HERVL40_18p11.21 ### chr18 rmsk gene 13952664 13954207 . - . gene_id "HERVL40_18p11.21"; transcript_id "HERVL40_18p11.21"; locus "HERVL40_18p11.21"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0401"; model_cov "1305"; model_pct "23.6"; chr18 rmsk exon 13952664 13952887 749 - . gene_id "HERVL40_18p11.21"; transcript_id "HERVL40_18p11.21"; locus "HERVL40_18p11.21"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0401"; repClass "LTR"; repEnd "235"; repFamily "ERVL"; repLeft "7"; repStart "-230"; chr18 rmsk exon 13952940 13954207 3397 - . gene_id "HERVL40_18p11.21"; transcript_id "HERVL40_18p11.21"; locus "HERVL40_18p11.21"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0401"; repClass "LTR"; repEnd "5038"; repFamily "ERVL"; repLeft "3733"; repStart "-492"; ### MER4_18p11.21 ### chr18 rmsk gene 14506059 14507004 . - . gene_id "MER4_18p11.21"; transcript_id "MER4_18p11.21"; locus "MER4_18p11.21"; category "internal"; intModel "MER4-int"; locid "MER4-int_0739"; model_cov "817"; model_pct "12.4"; chr18 rmsk exon 14506059 14506159 259 - . gene_id "MER4_18p11.21"; transcript_id "MER4_18p11.21"; locus "MER4_18p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0739"; repClass "LTR"; repEnd "2660"; repFamily "ERV1"; repLeft "2556"; repStart "-3938"; chr18 rmsk exon 14506365 14506454 410 - . gene_id "MER4_18p11.21"; transcript_id "MER4_18p11.21"; locus "MER4_18p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0739"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-723"; repStart "-7231"; chr18 rmsk exon 14506461 14507004 1992 - . gene_id "MER4_18p11.21"; transcript_id "MER4_18p11.21"; locus "MER4_18p11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0739"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### HERVIP10F_18p11.21a ### chr18 rmsk gene 14616039 14619934 . + . gene_id "HERVIP10F_18p11.21a"; transcript_id "HERVIP10F_18p11.21a"; locus "HERVIP10F_18p11.21a"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0104"; model_cov "3137"; model_pct "40.5"; chr18 rmsk exon 14616039 14619354 16930 + . gene_id "HERVIP10F_18p11.21a"; transcript_id "HERVIP10F_18p11.21a"; locus "HERVIP10F_18p11.21a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0104"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "4600"; chr18 rmsk exon 14619400 14619934 2744 + . gene_id "HERVIP10F_18p11.21a"; transcript_id "HERVIP10F_18p11.21a"; locus "HERVIP10F_18p11.21a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0104"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### ERVLB4_18p11.21f ### chr18 rmsk gene 15036163 15038414 . + . gene_id "ERVLB4_18p11.21f"; transcript_id "ERVLB4_18p11.21f"; locus "ERVLB4_18p11.21f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1616"; model_cov "1401"; model_pct "24.5"; chr18 rmsk exon 15036163 15036535 957 + . gene_id "ERVLB4_18p11.21f"; transcript_id "ERVLB4_18p11.21f"; locus "ERVLB4_18p11.21f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1616"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-116"; repStart "1"; chr18 rmsk exon 15036580 15037120 2399 + . gene_id "ERVLB4_18p11.21f"; transcript_id "ERVLB4_18p11.21f"; locus "ERVLB4_18p11.21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1616"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-5144"; repStart "5"; chr18 rmsk exon 15037117 15037942 4316 + . gene_id "ERVLB4_18p11.21f"; transcript_id "ERVLB4_18p11.21f"; locus "ERVLB4_18p11.21f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1616"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "-228"; repStart "4650"; chr18 rmsk exon 15037986 15038414 1710 + . gene_id "ERVLB4_18p11.21f"; transcript_id "ERVLB4_18p11.21f"; locus "ERVLB4_18p11.21f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1616"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "1"; ### HERVL_18p11.21c ### chr18 rmsk gene 15039150 15045695 . + . gene_id "HERVL_18p11.21c"; transcript_id "HERVL_18p11.21c"; locus "HERVL_18p11.21c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1168"; model_cov "5639"; model_pct "99.7"; chr18 rmsk exon 15039150 15039598 3144 + . gene_id "HERVL_18p11.21c"; transcript_id "HERVL_18p11.21c"; locus "HERVL_18p11.21c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1168"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 15039599 15045218 38917 + . gene_id "HERVL_18p11.21c"; transcript_id "HERVL_18p11.21c"; locus "HERVL_18p11.21c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1168"; repClass "LTR"; repEnd "5640"; repFamily "ERVL"; repLeft "-14"; repStart "1"; chr18 rmsk exon 15045232 15045695 2881 + . gene_id "HERVL_18p11.21c"; transcript_id "HERVL_18p11.21c"; locus "HERVL_18p11.21c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1168"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVIP10F_18p11.21b ### chr18 rmsk gene 15307987 15316600 . - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0105"; model_cov "7199"; model_pct "93.0"; chr18 rmsk exon 15307987 15308506 2632 - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0105"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr18 rmsk exon 15308584 15310513 11997 - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0105"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "5804"; repStart "-7"; chr18 rmsk exon 15310506 15313862 30075 - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0105"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1778"; repStart "-2635"; chr18 rmsk exon 15314157 15316073 30075 - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0105"; repClass "LTR"; repEnd "1902"; repFamily "ERV1"; repLeft "-47"; repStart "-5835"; chr18 rmsk exon 15316083 15316600 2443 - . gene_id "HERVIP10F_18p11.21b"; transcript_id "HERVIP10F_18p11.21b"; locus "HERVIP10F_18p11.21b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0105"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "3"; repStart "-53"; ### ERV316A3_18p11.21c ### chr18 rmsk gene 15361001 15363516 . + . gene_id "ERV316A3_18p11.21c"; transcript_id "ERV316A3_18p11.21c"; locus "ERV316A3_18p11.21c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2539"; model_cov "2070"; model_pct "39.6"; chr18 rmsk exon 15361001 15362207 2470 + . gene_id "ERV316A3_18p11.21c"; transcript_id "ERV316A3_18p11.21c"; locus "ERV316A3_18p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2539"; repClass "LTR"; repEnd "4210"; repFamily "ERVL"; repLeft "-1016"; repStart "2875"; chr18 rmsk exon 15362261 15362806 2470 + . gene_id "ERV316A3_18p11.21c"; transcript_id "ERV316A3_18p11.21c"; locus "ERV316A3_18p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2539"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "-409"; repStart "4211"; chr18 rmsk exon 15362930 15363059 439 + . gene_id "ERV316A3_18p11.21c"; transcript_id "ERV316A3_18p11.21c"; locus "ERV316A3_18p11.21c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2539"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "-28"; repStart "5069"; chr18 rmsk exon 15363267 15363516 764 + . gene_id "ERV316A3_18p11.21c"; transcript_id "ERV316A3_18p11.21c"; locus "ERV316A3_18p11.21c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2539"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-7"; repStart "175"; ### HUERSP3_18q11.1 ### chr18 rmsk gene 21078509 21080065 . - . gene_id "HUERSP3_18q11.1"; transcript_id "HUERSP3_18q11.1"; locus "HUERSP3_18q11.1"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0182"; model_cov "1617"; model_pct "18.1"; chr18 rmsk exon 21078509 21080065 9097 - . gene_id "HUERSP3_18q11.1"; transcript_id "HUERSP3_18q11.1"; locus "HUERSP3_18q11.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0182"; repClass "LTR"; repEnd "3084"; repFamily "ERV1"; repLeft "1467"; repStart "-5835"; ### ERV316A3_18q11.1 ### chr18 rmsk gene 21190560 21192359 . + . gene_id "ERV316A3_18q11.1"; transcript_id "ERV316A3_18q11.1"; locus "ERV316A3_18q11.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2540"; model_cov "583"; model_pct "11.2"; chr18 rmsk exon 21190560 21190974 1412 + . gene_id "ERV316A3_18q11.1"; transcript_id "ERV316A3_18q11.1"; locus "ERV316A3_18q11.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2540"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "1"; chr18 rmsk exon 21190985 21191205 1138 + . gene_id "ERV316A3_18q11.1"; transcript_id "ERV316A3_18q11.1"; locus "ERV316A3_18q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2540"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-4773"; repStart "237"; chr18 rmsk exon 21191505 21191841 1138 + . gene_id "ERV316A3_18q11.1"; transcript_id "ERV316A3_18q11.1"; locus "ERV316A3_18q11.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2540"; repClass "LTR"; repEnd "798"; repFamily "ERVL"; repLeft "-4428"; repStart "431"; chr18 rmsk exon 21192030 21192359 834 + . gene_id "ERV316A3_18q11.1"; transcript_id "ERV316A3_18q11.1"; locus "ERV316A3_18q11.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2540"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-50"; repStart "5"; ### HERVL40_18q11.2a ### chr18 rmsk gene 22751181 22754506 . + . gene_id "HERVL40_18q11.2a"; transcript_id "HERVL40_18q11.2a"; locus "HERVL40_18q11.2a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0402"; model_cov "2061"; model_pct "37.3"; chr18 rmsk exon 22751181 22751300 414 + . gene_id "HERVL40_18q11.2a"; transcript_id "HERVL40_18q11.2a"; locus "HERVL40_18q11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0402"; repClass "LTR"; repEnd "2741"; repFamily "ERVL"; repLeft "-2789"; repStart "2612"; chr18 rmsk exon 22752643 22754506 5361 + . gene_id "HERVL40_18q11.2a"; transcript_id "HERVL40_18q11.2a"; locus "HERVL40_18q11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0402"; repClass "LTR"; repEnd "4664"; repFamily "ERVL"; repLeft "-866"; repStart "2732"; ### ERV316A3_18q11.2a ### chr18 rmsk gene 22840781 22843704 . + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2542"; model_cov "1899"; model_pct "36.3"; chr18 rmsk exon 22840781 22841147 1243 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-23"; repStart "1"; chr18 rmsk exon 22841172 22841402 490 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "214"; repFamily "ERVL"; repLeft "-5012"; repStart "7"; chr18 rmsk exon 22841561 22842227 1321 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "1398"; repFamily "ERVL"; repLeft "-3828"; repStart "699"; chr18 rmsk exon 22842343 22842882 2111 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "-3552"; repStart "1140"; chr18 rmsk exon 22842930 22843243 1285 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "2321"; repFamily "ERVL"; repLeft "-2905"; repStart "1982"; chr18 rmsk exon 22843243 22843353 382 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "5106"; chr18 rmsk exon 22843358 22843704 1417 + . gene_id "ERV316A3_18q11.2a"; transcript_id "ERV316A3_18q11.2a"; locus "ERV316A3_18q11.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2542"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "-92"; repStart "5"; ### HERVH_18q11.2 ### chr18 rmsk gene 23285010 23290046 . + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1119"; model_cov "4784"; model_pct "62.0"; chr18 rmsk exon 23285010 23285069 479 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "64"; repFamily "ERV1"; repLeft "-400"; repStart "1"; chr18 rmsk exon 23285070 23287461 16338 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "439"; chr18 rmsk exon 23287448 23288300 6353 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr18 rmsk exon 23288303 23288482 1351 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4488"; chr18 rmsk exon 23288480 23289057 3738 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4575"; chr18 rmsk exon 23289038 23289274 1444 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr18 rmsk exon 23289273 23289650 2323 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr18 rmsk exon 23289651 23290046 2789 + . gene_id "HERVH_18q11.2"; transcript_id "HERVH_18q11.2"; locus "HERVH_18q11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1119"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_18q11.2a ### chr18 rmsk gene 23799680 23807868 . - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3320"; model_cov "5127"; model_pct "90.5"; chr18 rmsk exon 23799680 23800115 2637 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr18 rmsk exon 23800125 23800388 1387 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "5366"; repStart "-8"; chr18 rmsk exon 23801912 23802050 10612 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "5351"; repFamily "ERVL"; repLeft "5234"; repStart "-316"; chr18 rmsk exon 23802275 23804383 10612 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "2999"; repStart "-434"; chr18 rmsk exon 23804379 23804642 9150 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "2832"; repFamily "ERVL"; repLeft "2572"; repStart "-2835"; chr18 rmsk exon 23805056 23806260 9150 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "2571"; repFamily "ERVL"; repLeft "1363"; repStart "-3096"; chr18 rmsk exon 23806235 23807196 5152 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "995"; repFamily "ERVL"; repLeft "-20"; repStart "-4672"; chr18 rmsk exon 23807369 23807450 267 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "339"; repStart "0"; chr18 rmsk exon 23807510 23807868 2317 - . gene_id "ERVLE_18q11.2a"; transcript_id "ERVLE_18q11.2a"; locus "ERVLE_18q11.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3320"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "-136"; repStart "-49"; ### ERV316A3_18q11.2b ### chr18 rmsk gene 24354815 24355638 . - . gene_id "ERV316A3_18q11.2b"; transcript_id "ERV316A3_18q11.2b"; locus "ERV316A3_18q11.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2545"; model_cov "520"; model_pct "10.0"; chr18 rmsk exon 24354815 24355234 960 - . gene_id "ERV316A3_18q11.2b"; transcript_id "ERV316A3_18q11.2b"; locus "ERV316A3_18q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2545"; repClass "LTR"; repEnd "1542"; repFamily "ERVL"; repLeft "1137"; repStart "-3684"; chr18 rmsk exon 24355519 24355638 960 - . gene_id "ERV316A3_18q11.2b"; transcript_id "ERV316A3_18q11.2b"; locus "ERV316A3_18q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2545"; repClass "LTR"; repEnd "1136"; repFamily "ERVL"; repLeft "1021"; repStart "-4090"; ### ERV316A3_18q11.2c ### chr18 rmsk gene 24356917 24358507 . + . gene_id "ERV316A3_18q11.2c"; transcript_id "ERV316A3_18q11.2c"; locus "ERV316A3_18q11.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2546"; model_cov "808"; model_pct "15.5"; chr18 rmsk exon 24356917 24357094 1184 + . gene_id "ERV316A3_18q11.2c"; transcript_id "ERV316A3_18q11.2c"; locus "ERV316A3_18q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2546"; repClass "LTR"; repEnd "2569"; repFamily "ERVL"; repLeft "-2657"; repStart "2348"; chr18 rmsk exon 24357654 24357979 1184 + . gene_id "ERV316A3_18q11.2c"; transcript_id "ERV316A3_18q11.2c"; locus "ERV316A3_18q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2546"; repClass "LTR"; repEnd "2883"; repFamily "ERVL"; repLeft "-2343"; repStart "2570"; chr18 rmsk exon 24357974 24358241 1184 + . gene_id "ERV316A3_18q11.2c"; transcript_id "ERV316A3_18q11.2c"; locus "ERV316A3_18q11.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2546"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "-266"; repStart "4686"; chr18 rmsk exon 24358242 24358507 646 + . gene_id "ERV316A3_18q11.2c"; transcript_id "ERV316A3_18q11.2c"; locus "ERV316A3_18q11.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2546"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-13"; repStart "162"; ### MER4B_18q11.2 ### chr18 rmsk gene 24690536 24691983 . + . gene_id "MER4B_18q11.2"; transcript_id "MER4B_18q11.2"; locus "MER4B_18q11.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0431"; model_cov "1432"; model_pct "21.2"; chr18 rmsk exon 24690536 24691983 5607 + . gene_id "MER4B_18q11.2"; transcript_id "MER4B_18q11.2"; locus "MER4B_18q11.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0431"; repClass "LTR"; repEnd "4520"; repFamily "ERV1"; repLeft "-2238"; repStart "3088"; ### HERVL40_18q11.2b ### chr18 rmsk gene 24747651 24752630 . - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0403"; model_cov "3283"; model_pct "59.4"; chr18 rmsk exon 24747651 24748120 1733 - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0403"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 24748121 24748641 1259 - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0403"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "4587"; repStart "-263"; chr18 rmsk exon 24750053 24750923 3079 - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0403"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "3765"; repStart "-870"; chr18 rmsk exon 24750969 24751999 4691 - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0403"; repClass "LTR"; repEnd "3582"; repFamily "ERVL"; repLeft "2522"; repStart "-1948"; chr18 rmsk exon 24752004 24752630 2038 - . gene_id "HERVL40_18q11.2b"; transcript_id "HERVL40_18q11.2b"; locus "HERVL40_18q11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0403"; repClass "LTR"; repEnd "1606"; repFamily "ERVL"; repLeft "958"; repStart "-3924"; ### ERVLB4_18q11.2 ### chr18 rmsk gene 24771589 24779206 . - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; category "unknown"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1617"; model_cov "5529"; model_pct "96.8"; chr18 rmsk exon 24771589 24771845 1877 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "244"; repStart "0"; chr18 rmsk exon 24772161 24772408 1877 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "247"; repFamily "ERVL"; repLeft "4"; repStart "-309"; chr18 rmsk exon 24772409 24775733 21044 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "5706"; repFamily "ERVL"; repLeft "2334"; repStart "-8"; chr18 rmsk exon 24775734 24776288 2299 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-42"; repStart "-2"; chr18 rmsk exon 24776290 24776352 441 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "2269"; repStart "-3381"; chr18 rmsk exon 24776579 24777542 5626 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "2268"; repFamily "ERVL"; repLeft "1301"; repStart "-3446"; chr18 rmsk exon 24777536 24778676 7042 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "1128"; repFamily "ERVL"; repLeft "2"; repStart "-4586"; chr18 rmsk exon 24778762 24779206 2032 - . gene_id "ERVLB4_18q11.2"; transcript_id "ERVLB4_18q11.2"; locus "ERVLB4_18q11.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1617"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "24"; repStart "-41"; ### ERV316A3_18q11.2d ### chr18 rmsk gene 25511993 25513522 . + . gene_id "ERV316A3_18q11.2d"; transcript_id "ERV316A3_18q11.2d"; locus "ERV316A3_18q11.2d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2547"; model_cov "774"; model_pct "14.8"; chr18 rmsk exon 25511993 25512081 240 + . gene_id "ERV316A3_18q11.2d"; transcript_id "ERV316A3_18q11.2d"; locus "ERV316A3_18q11.2d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2547"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "-326"; repStart "1"; chr18 rmsk exon 25512187 25513152 2591 + . gene_id "ERV316A3_18q11.2d"; transcript_id "ERV316A3_18q11.2d"; locus "ERV316A3_18q11.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2547"; repClass "LTR"; repEnd "4770"; repFamily "ERVL"; repLeft "-456"; repStart "3996"; chr18 rmsk exon 25513159 25513522 1346 + . gene_id "ERV316A3_18q11.2d"; transcript_id "ERV316A3_18q11.2d"; locus "ERV316A3_18q11.2d"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2547"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "-8"; repStart "15"; ### ERV316A3_18q11.2e ### chr18 rmsk gene 25647320 25651583 . - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2548"; model_cov "3355"; model_pct "64.2"; chr18 rmsk exon 25647320 25647558 1241 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "256"; repFamily "ERVL"; repLeft "2"; repStart "-195"; chr18 rmsk exon 25647559 25648002 1274 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4761"; repStart "0"; chr18 rmsk exon 25648002 25648768 2029 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "4279"; repFamily "ERVL"; repLeft "3495"; repStart "-947"; chr18 rmsk exon 25649308 25649938 3136 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "2803"; repStart "-1760"; chr18 rmsk exon 25650218 25651181 3136 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "1841"; repStart "-2424"; chr18 rmsk exon 25651177 25651583 694 - . gene_id "ERV316A3_18q11.2e"; transcript_id "ERV316A3_18q11.2e"; locus "ERV316A3_18q11.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2548"; repClass "LTR"; repEnd "2105"; repFamily "ERVL"; repLeft "1623"; repStart "-3121"; ### ERVLE_18q11.2b ### chr18 rmsk gene 26160808 26161907 . - . gene_id "ERVLE_18q11.2b"; transcript_id "ERVLE_18q11.2b"; locus "ERVLE_18q11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3321"; model_cov "956"; model_pct "16.9"; chr18 rmsk exon 26160808 26161589 2311 - . gene_id "ERVLE_18q11.2b"; transcript_id "ERVLE_18q11.2b"; locus "ERVLE_18q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3321"; repClass "LTR"; repEnd "5179"; repFamily "ERVL"; repLeft "4371"; repStart "-488"; chr18 rmsk exon 26161759 26161907 478 - . gene_id "ERVLE_18q11.2b"; transcript_id "ERVLE_18q11.2b"; locus "ERVLE_18q11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3321"; repClass "LTR"; repEnd "4457"; repFamily "ERVL"; repLeft "4309"; repStart "-1210"; ### HERV9_18q11.2 ### chr18 rmsk gene 26231675 26238550 . - . gene_id "HERV9_18q11.2"; transcript_id "HERV9_18q11.2"; locus "HERV9_18q11.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0174"; model_cov "6467"; model_pct "76.7"; chr18 rmsk exon 26231675 26232215 3991 - . gene_id "HERV9_18q11.2"; transcript_id "HERV9_18q11.2"; locus "HERV9_18q11.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0174"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 26232227 26233679 11979 - . gene_id "HERV9_18q11.2"; transcript_id "HERV9_18q11.2"; locus "HERV9_18q11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0174"; repClass "LTR"; repEnd "8434"; repFamily "ERV1"; repLeft "6979"; repStart "-2"; chr18 rmsk exon 26233679 26238550 35833 - . gene_id "HERV9_18q11.2"; transcript_id "HERV9_18q11.2"; locus "HERV9_18q11.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0174"; repClass "LTR"; repEnd "5559"; repFamily "ERV1"; repLeft "547"; repStart "-2877"; ### ERV316A3_18q11.2f ### chr18 rmsk gene 26267884 26269507 . - . gene_id "ERV316A3_18q11.2f"; transcript_id "ERV316A3_18q11.2f"; locus "ERV316A3_18q11.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2549"; model_cov "1166"; model_pct "22.3"; chr18 rmsk exon 26267884 26268209 647 - . gene_id "ERV316A3_18q11.2f"; transcript_id "ERV316A3_18q11.2f"; locus "ERV316A3_18q11.2f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2549"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "88"; repStart "-20"; chr18 rmsk exon 26268252 26268809 2138 - . gene_id "ERV316A3_18q11.2f"; transcript_id "ERV316A3_18q11.2f"; locus "ERV316A3_18q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2549"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "4656"; repStart "-2"; chr18 rmsk exon 26269121 26269507 2138 - . gene_id "ERV316A3_18q11.2f"; transcript_id "ERV316A3_18q11.2f"; locus "ERV316A3_18q11.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2549"; repClass "LTR"; repEnd "4487"; repFamily "ERVL"; repLeft "3889"; repStart "-739"; ### ERVLE_18q11.2c ### chr18 rmsk gene 26369428 26373198 . + . gene_id "ERVLE_18q11.2c"; transcript_id "ERVLE_18q11.2c"; locus "ERVLE_18q11.2c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3322"; model_cov "2974"; model_pct "52.5"; chr18 rmsk exon 26369428 26369702 645 + . gene_id "ERVLE_18q11.2c"; transcript_id "ERVLE_18q11.2c"; locus "ERVLE_18q11.2c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3322"; repClass "LTR"; repEnd "311"; repFamily "ERVL"; repLeft "-352"; repStart "1"; chr18 rmsk exon 26369862 26371032 4189 + . gene_id "ERVLE_18q11.2c"; transcript_id "ERVLE_18q11.2c"; locus "ERVLE_18q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3322"; repClass "LTR"; repEnd "1292"; repFamily "ERVL"; repLeft "-4375"; repStart "-24"; chr18 rmsk exon 26371381 26372688 6057 + . gene_id "ERVLE_18q11.2c"; transcript_id "ERVLE_18q11.2c"; locus "ERVLE_18q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3322"; repClass "LTR"; repEnd "2699"; repFamily "ERVL"; repLeft "-2968"; repStart "1285"; chr18 rmsk exon 26372976 26373198 6057 + . gene_id "ERVLE_18q11.2c"; transcript_id "ERVLE_18q11.2c"; locus "ERVLE_18q11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3322"; repClass "LTR"; repEnd "2944"; repFamily "ERVL"; repLeft "-2723"; repStart "2700"; ### HERVL_18q11.2 ### chr18 rmsk gene 27219443 27221403 . + . gene_id "HERVL_18q11.2"; transcript_id "HERVL_18q11.2"; locus "HERVL_18q11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1171"; model_cov "1467"; model_pct "25.9"; chr18 rmsk exon 27219443 27219843 3073 + . gene_id "HERVL_18q11.2"; transcript_id "HERVL_18q11.2"; locus "HERVL_18q11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1171"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chr18 rmsk exon 27219896 27219937 3073 + . gene_id "HERVL_18q11.2"; transcript_id "HERVL_18q11.2"; locus "HERVL_18q11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1171"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-1"; repStart "411"; chr18 rmsk exon 27219938 27221403 10825 + . gene_id "HERVL_18q11.2"; transcript_id "HERVL_18q11.2"; locus "HERVL_18q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1171"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "-4186"; repStart "1"; ### ERV316A3_18q11.2g ### chr18 rmsk gene 27254235 27255444 . - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2550"; model_cov "621"; model_pct "11.9"; chr18 rmsk exon 27254235 27254583 438 - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2550"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "28"; repStart "-15"; chr18 rmsk exon 27254633 27254805 919 - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2550"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "5069"; repStart "0"; chr18 rmsk exon 27254987 27255247 919 - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2550"; repClass "LTR"; repEnd "5068"; repFamily "ERVL"; repLeft "4806"; repStart "-158"; chr18 rmsk exon 27255234 27255385 488 - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2550"; repClass "LTR"; repEnd "3799"; repFamily "ERVL"; repLeft "3647"; repStart "-1427"; chr18 rmsk exon 27255396 27255444 260 - . gene_id "ERV316A3_18q11.2g"; transcript_id "ERV316A3_18q11.2g"; locus "ERV316A3_18q11.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2550"; repClass "LTR"; repEnd "3244"; repFamily "ERVL"; repLeft "3194"; repStart "-1982"; ### HERVL40_18q11.2c ### chr18 rmsk gene 27262790 27266446 . + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0404"; model_cov "2464"; model_pct "44.6"; chr18 rmsk exon 27262790 27263026 604 + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0404"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "210"; chr18 rmsk exon 27263404 27263589 461 + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0404"; repClass "LTR"; repEnd "1206"; repFamily "ERVL"; repLeft "-4324"; repStart "1032"; chr18 rmsk exon 27264228 27264569 945 + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0404"; repClass "LTR"; repEnd "2389"; repFamily "ERVL"; repLeft "-3141"; repStart "2050"; chr18 rmsk exon 27264602 27265808 3618 + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0404"; repClass "LTR"; repEnd "4111"; repFamily "ERVL"; repLeft "-1419"; repStart "2831"; chr18 rmsk exon 27265820 27266446 2001 + . gene_id "HERVL40_18q11.2c"; transcript_id "HERVL40_18q11.2c"; locus "HERVL40_18q11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0404"; repClass "LTR"; repEnd "5163"; repFamily "ERVL"; repLeft "-367"; repStart "4492"; ### ERVLE_18q12.1a ### chr18 rmsk gene 28203371 28205351 . - . gene_id "ERVLE_18q12.1a"; transcript_id "ERVLE_18q12.1a"; locus "ERVLE_18q12.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3324"; model_cov "1701"; model_pct "30.0"; chr18 rmsk exon 28203371 28203585 1084 - . gene_id "ERVLE_18q12.1a"; transcript_id "ERVLE_18q12.1a"; locus "ERVLE_18q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3324"; repClass "LTR"; repEnd "2668"; repFamily "ERVL"; repLeft "2467"; repStart "-2999"; chr18 rmsk exon 28203878 28204276 1084 - . gene_id "ERVLE_18q12.1a"; transcript_id "ERVLE_18q12.1a"; locus "ERVLE_18q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3324"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "2039"; repStart "-3201"; chr18 rmsk exon 28204288 28204740 1053 - . gene_id "ERVLE_18q12.1a"; transcript_id "ERVLE_18q12.1a"; locus "ERVLE_18q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3324"; repClass "LTR"; repEnd "1845"; repFamily "ERVL"; repLeft "1368"; repStart "-3822"; chr18 rmsk exon 28204772 28205351 1346 - . gene_id "ERVLE_18q12.1a"; transcript_id "ERVLE_18q12.1a"; locus "ERVLE_18q12.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3324"; repClass "LTR"; repEnd "1283"; repFamily "ERVL"; repLeft "687"; repStart "-4384"; ### HERVH48_18q12.1 ### chr18 rmsk gene 28208841 28212098 . - . gene_id "HERVH48_18q12.1"; transcript_id "HERVH48_18q12.1"; locus "HERVH48_18q12.1"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0047"; model_cov "3267"; model_pct "49.1"; chr18 rmsk exon 28208841 28209227 2714 - . gene_id "HERVH48_18q12.1"; transcript_id "HERVH48_18q12.1"; locus "HERVH48_18q12.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0047"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 28209228 28211029 12613 - . gene_id "HERVH48_18q12.1"; transcript_id "HERVH48_18q12.1"; locus "HERVH48_18q12.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0047"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "4825"; repStart "0"; chr18 rmsk exon 28211040 28212098 3520 - . gene_id "HERVH48_18q12.1"; transcript_id "HERVH48_18q12.1"; locus "HERVH48_18q12.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0047"; repClass "LTR"; repEnd "4225"; repFamily "ERV1"; repLeft "2787"; repStart "-2429"; ### ERV316A3_18q12.1a ### chr18 rmsk gene 28357917 28359076 . + . gene_id "ERV316A3_18q12.1a"; transcript_id "ERV316A3_18q12.1a"; locus "ERV316A3_18q12.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2552"; model_cov "688"; model_pct "13.2"; chr18 rmsk exon 28357917 28358596 2214 + . gene_id "ERV316A3_18q12.1a"; transcript_id "ERV316A3_18q12.1a"; locus "ERV316A3_18q12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2552"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "-45"; repStart "4493"; chr18 rmsk exon 28358627 28359076 1276 + . gene_id "ERV316A3_18q12.1a"; transcript_id "ERV316A3_18q12.1a"; locus "ERV316A3_18q12.1a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2552"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4B_18q12.1 ### chr18 rmsk gene 28480836 28481246 . - . gene_id "MER4B_18q12.1"; transcript_id "MER4B_18q12.1"; locus "MER4B_18q12.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0432"; model_cov "766"; model_pct "11.3"; chr18 rmsk exon 28480836 28481246 914 - . gene_id "MER4B_18q12.1"; transcript_id "MER4B_18q12.1"; locus "MER4B_18q12.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0432"; repClass "LTR"; repEnd "5799"; repFamily "ERV1"; repLeft "5033"; repStart "-959"; ### HERVH_18q12.1a ### chr18 rmsk gene 28693027 28698881 . - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1120"; model_cov "4995"; model_pct "64.8"; chr18 rmsk exon 28693027 28693459 2564 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 28693460 28693833 2455 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr18 rmsk exon 28693832 28694049 1429 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr18 rmsk exon 28694057 28694624 3533 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "5143"; repFamily "ERV1"; repLeft "4575"; repStart "-2570"; chr18 rmsk exon 28694622 28694804 1343 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "4488"; repStart "-3043"; chr18 rmsk exon 28694807 28695309 3386 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr18 rmsk exon 28695302 28695448 861 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr18 rmsk exon 28695443 28698448 19539 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr18 rmsk exon 28698449 28698881 2597 - . gene_id "HERVH_18q12.1a"; transcript_id "HERVH_18q12.1a"; locus "HERVH_18q12.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1120"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_18q12.1b ### chr18 rmsk gene 29184442 29186109 . - . gene_id "ERVLE_18q12.1b"; transcript_id "ERVLE_18q12.1b"; locus "ERVLE_18q12.1b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3325"; model_cov "1089"; model_pct "19.2"; chr18 rmsk exon 29184442 29184634 458 - . gene_id "ERVLE_18q12.1b"; transcript_id "ERVLE_18q12.1b"; locus "ERVLE_18q12.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3325"; repClass "LTR"; repEnd "593"; repFamily "ERVL"; repLeft "399"; repStart "-70"; chr18 rmsk exon 29184646 29184991 998 - . gene_id "ERVLE_18q12.1b"; transcript_id "ERVLE_18q12.1b"; locus "ERVLE_18q12.1b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3325"; repClass "LTR"; repEnd "363"; repFamily "ERVL"; repLeft "1"; repStart "-300"; chr18 rmsk exon 29185000 29185970 2692 - . gene_id "ERVLE_18q12.1b"; transcript_id "ERVLE_18q12.1b"; locus "ERVLE_18q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3325"; repClass "LTR"; repEnd "5659"; repFamily "ERVL"; repLeft "4622"; repStart "-8"; chr18 rmsk exon 29186058 29186109 261 - . gene_id "ERVLE_18q12.1b"; transcript_id "ERVLE_18q12.1b"; locus "ERVLE_18q12.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3325"; repClass "LTR"; repEnd "4601"; repFamily "ERVL"; repLeft "4549"; repStart "-1066"; ### MER34B_18q12.1 ### chr18 rmsk gene 29202215 29203414 . + . gene_id "MER34B_18q12.1"; transcript_id "MER34B_18q12.1"; locus "MER34B_18q12.1"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0250"; model_cov "1994"; model_pct "37.2"; chr18 rmsk exon 29202215 29203073 1897 + . gene_id "MER34B_18q12.1"; transcript_id "MER34B_18q12.1"; locus "MER34B_18q12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0250"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "-4629"; repStart "-934"; chr18 rmsk exon 29203089 29203414 1349 + . gene_id "MER34B_18q12.1"; transcript_id "MER34B_18q12.1"; locus "MER34B_18q12.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0250"; repClass "LTR"; repEnd "1267"; repFamily "ERV1"; repLeft "-4089"; repStart "934"; ### ERVLE_18q12.1c ### chr18 rmsk gene 29243511 29245312 . - . gene_id "ERVLE_18q12.1c"; transcript_id "ERVLE_18q12.1c"; locus "ERVLE_18q12.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3326"; model_cov "773"; model_pct "13.6"; chr18 rmsk exon 29243511 29243583 298 - . gene_id "ERVLE_18q12.1c"; transcript_id "ERVLE_18q12.1c"; locus "ERVLE_18q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3326"; repClass "LTR"; repEnd "3252"; repFamily "ERVL"; repLeft "3181"; repStart "-2415"; chr18 rmsk exon 29243598 29243832 792 - . gene_id "ERVLE_18q12.1c"; transcript_id "ERVLE_18q12.1c"; locus "ERVLE_18q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3326"; repClass "LTR"; repEnd "3129"; repFamily "ERVL"; repLeft "2901"; repStart "-2538"; chr18 rmsk exon 29244307 29244546 792 - . gene_id "ERVLE_18q12.1c"; transcript_id "ERVLE_18q12.1c"; locus "ERVLE_18q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3326"; repClass "LTR"; repEnd "2900"; repFamily "ERVL"; repLeft "2636"; repStart "-2767"; chr18 rmsk exon 29245111 29245312 314 - . gene_id "ERVLE_18q12.1c"; transcript_id "ERVLE_18q12.1c"; locus "ERVLE_18q12.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3326"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "170"; repStart "-5287"; ### ERV316A3_18q12.1b ### chr18 rmsk gene 29281742 29287425 . - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2554"; model_cov "3218"; model_pct "61.6"; chr18 rmsk exon 29281742 29282570 2976 - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2554"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "3504"; repStart "-872"; chr18 rmsk exon 29282859 29283952 2976 - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2554"; repClass "LTR"; repEnd "3503"; repFamily "ERVL"; repLeft "2392"; repStart "-1723"; chr18 rmsk exon 29283984 29284518 1121 - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2554"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "1726"; repStart "-2952"; chr18 rmsk exon 29286481 29286597 324 - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2554"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "1042"; repStart "-4062"; chr18 rmsk exon 29286897 29287425 830 - . gene_id "ERV316A3_18q12.1b"; transcript_id "ERV316A3_18q12.1b"; locus "ERV316A3_18q12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2554"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "345"; repStart "-4294"; ### HERVL_18q12.1a ### chr18 rmsk gene 29296705 29300107 . - . gene_id "HERVL_18q12.1a"; transcript_id "HERVL_18q12.1a"; locus "HERVL_18q12.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1172"; model_cov "3198"; model_pct "56.6"; chr18 rmsk exon 29296705 29297038 1539 - . gene_id "HERVL_18q12.1a"; transcript_id "HERVL_18q12.1a"; locus "HERVL_18q12.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1172"; repClass "LTR"; repEnd "309"; repFamily "ERVL"; repLeft "1"; repStart "-144"; chr18 rmsk exon 29297039 29297379 2051 - . gene_id "HERVL_18q12.1a"; transcript_id "HERVL_18q12.1a"; locus "HERVL_18q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1172"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5317"; repStart "0"; chr18 rmsk exon 29297397 29298286 6565 - . gene_id "HERVL_18q12.1a"; transcript_id "HERVL_18q12.1a"; locus "HERVL_18q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1172"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "4332"; repStart "-421"; chr18 rmsk exon 29298282 29300107 11057 - . gene_id "HERVL_18q12.1a"; transcript_id "HERVL_18q12.1a"; locus "HERVL_18q12.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1172"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "1091"; repStart "-2603"; ### HERVIP10FH_18q12.1 ### chr18 rmsk gene 29356350 29362631 . - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0162"; model_cov "5134"; model_pct "100.0"; chr18 rmsk exon 29356350 29356936 3197 - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0162"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 29356937 29360656 33924 - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0162"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1332"; repStart "0"; chr18 rmsk exon 29360683 29361798 33924 - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0162"; repClass "LTR"; repEnd "1331"; repFamily "ERV1"; repLeft "283"; repStart "-3771"; chr18 rmsk exon 29361803 29362147 1714 - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0162"; repClass "LTR"; repEnd "-2366"; repFamily "ERV1"; repLeft "-2682"; repStart "-7468"; chr18 rmsk exon 29362148 29362631 3369 - . gene_id "HERVIP10FH_18q12.1"; transcript_id "HERVIP10FH_18q12.1"; locus "HERVIP10FH_18q12.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0162"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_18q12.1 ### chr18 rmsk gene 29419868 29423960 . - . gene_id "HML5_18q12.1"; transcript_id "HML5_18q12.1"; locus "HML5_18q12.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0111"; model_cov "3107"; model_pct "45.4"; chr18 rmsk exon 29419868 29420340 2891 - . gene_id "HML5_18q12.1"; transcript_id "HML5_18q12.1"; locus "HML5_18q12.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0111"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr18 rmsk exon 29420341 29422019 12176 - . gene_id "HML5_18q12.1"; transcript_id "HML5_18q12.1"; locus "HML5_18q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0111"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "5156"; repStart "0"; chr18 rmsk exon 29422017 29423441 10473 - . gene_id "HML5_18q12.1"; transcript_id "HML5_18q12.1"; locus "HML5_18q12.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0111"; repClass "LTR"; repEnd "1455"; repFamily "ERVK"; repLeft "29"; repStart "-5382"; chr18 rmsk exon 29423442 29423960 3257 - . gene_id "HML5_18q12.1"; transcript_id "HML5_18q12.1"; locus "HML5_18q12.1"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0111"; repClass "LTR"; repEnd "503"; repFamily "ERVK"; repLeft "-92"; repStart "-4"; ### ERVLE_18q12.1d ### chr18 rmsk gene 29488761 29489603 . - . gene_id "ERVLE_18q12.1d"; transcript_id "ERVLE_18q12.1d"; locus "ERVLE_18q12.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3327"; model_cov "888"; model_pct "15.7"; chr18 rmsk exon 29488761 29489603 1372 - . gene_id "ERVLE_18q12.1d"; transcript_id "ERVLE_18q12.1d"; locus "ERVLE_18q12.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3327"; repClass "LTR"; repEnd "5601"; repFamily "ERVL"; repLeft "4713"; repStart "-66"; ### ERVLE_18q12.1e ### chr18 rmsk gene 29492284 29493741 . - . gene_id "ERVLE_18q12.1e"; transcript_id "ERVLE_18q12.1e"; locus "ERVLE_18q12.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3328"; model_cov "1136"; model_pct "20.0"; chr18 rmsk exon 29492284 29492854 1949 - . gene_id "ERVLE_18q12.1e"; transcript_id "ERVLE_18q12.1e"; locus "ERVLE_18q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3328"; repClass "LTR"; repEnd "4696"; repFamily "ERVL"; repLeft "4112"; repStart "-971"; chr18 rmsk exon 29493188 29493741 1949 - . gene_id "ERVLE_18q12.1e"; transcript_id "ERVLE_18q12.1e"; locus "ERVLE_18q12.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3328"; repClass "LTR"; repEnd "4111"; repFamily "ERVL"; repLeft "3559"; repStart "-1556"; ### ERVLE_18q12.1f ### chr18 rmsk gene 29756372 29757123 . - . gene_id "ERVLE_18q12.1f"; transcript_id "ERVLE_18q12.1f"; locus "ERVLE_18q12.1f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3329"; model_cov "656"; model_pct "11.6"; chr18 rmsk exon 29756372 29756906 735 - . gene_id "ERVLE_18q12.1f"; transcript_id "ERVLE_18q12.1f"; locus "ERVLE_18q12.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3329"; repClass "LTR"; repEnd "2086"; repFamily "ERVL"; repLeft "1538"; repStart "-3581"; chr18 rmsk exon 29757015 29757123 274 - . gene_id "ERVLE_18q12.1f"; transcript_id "ERVLE_18q12.1f"; locus "ERVLE_18q12.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3329"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "1286"; repStart "-4273"; ### MER61_18q12.1a ### chr18 rmsk gene 29879543 29884639 . - . gene_id "MER61_18q12.1a"; transcript_id "MER61_18q12.1a"; locus "MER61_18q12.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0345"; model_cov "4608"; model_pct "88.3"; chr18 rmsk exon 29879543 29879879 1627 - . gene_id "MER61_18q12.1a"; transcript_id "MER61_18q12.1a"; locus "MER61_18q12.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0345"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 29879880 29883656 24661 - . gene_id "MER61_18q12.1a"; transcript_id "MER61_18q12.1a"; locus "MER61_18q12.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0345"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1306"; repStart "0"; chr18 rmsk exon 29883683 29884298 2149 - . gene_id "MER61_18q12.1a"; transcript_id "MER61_18q12.1a"; locus "MER61_18q12.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0345"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "3"; repStart "-4517"; chr18 rmsk exon 29884301 29884639 1513 - . gene_id "MER61_18q12.1a"; transcript_id "MER61_18q12.1a"; locus "MER61_18q12.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0345"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP2_18q12.1 ### chr18 rmsk gene 29911868 29915826 . + . gene_id "HUERSP2_18q12.1"; transcript_id "HUERSP2_18q12.1"; locus "HUERSP2_18q12.1"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0115"; model_cov "3010"; model_pct "97.5"; chr18 rmsk exon 29911868 29912057 1215 + . gene_id "HUERSP2_18q12.1"; transcript_id "HUERSP2_18q12.1"; locus "HUERSP2_18q12.1"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0115"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "-611"; repStart "1"; chr18 rmsk exon 29912109 29915096 15677 + . gene_id "HUERSP2_18q12.1"; transcript_id "HUERSP2_18q12.1"; locus "HUERSP2_18q12.1"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0115"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "78"; chr18 rmsk exon 29915097 29915826 3647 + . gene_id "HUERSP2_18q12.1"; transcript_id "HUERSP2_18q12.1"; locus "HUERSP2_18q12.1"; repName "LTR1E"; geneRegion "ltr"; locid "HUERS-P2-int_0115"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLB4_18q12.1a ### chr18 rmsk gene 30396571 30399526 . - . gene_id "ERVLB4_18q12.1a"; transcript_id "ERVLB4_18q12.1a"; locus "ERVLB4_18q12.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1620"; model_cov "2532"; model_pct "44.3"; chr18 rmsk exon 30396571 30399050 13465 - . gene_id "ERVLB4_18q12.1a"; transcript_id "ERVLB4_18q12.1a"; locus "ERVLB4_18q12.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1620"; repClass "LTR"; repEnd "2534"; repFamily "ERVL"; repLeft "2"; repStart "-3180"; chr18 rmsk exon 30399054 30399526 649 - . gene_id "ERVLB4_18q12.1a"; transcript_id "ERVLB4_18q12.1a"; locus "ERVLB4_18q12.1a"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1620"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "28"; repStart "-2"; ### ERVLE_18q12.1g ### chr18 rmsk gene 30508063 30515813 . - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3330"; model_cov "3884"; model_pct "68.5"; chr18 rmsk exon 30508063 30508847 1183 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "5231"; repFamily "ERVL"; repLeft "4432"; repStart "-436"; chr18 rmsk exon 30509441 30510030 2303 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "4284"; repFamily "ERVL"; repLeft "3673"; repStart "-1383"; chr18 rmsk exon 30510337 30510977 2303 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "3672"; repFamily "ERVL"; repLeft "3001"; repStart "-1995"; chr18 rmsk exon 30511293 30512182 2303 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "3000"; repFamily "ERVL"; repLeft "2136"; repStart "-2667"; chr18 rmsk exon 30512538 30512817 2303 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "2135"; repFamily "ERVL"; repLeft "1832"; repStart "-3532"; chr18 rmsk exon 30514357 30514693 2303 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "1831"; repFamily "ERVL"; repLeft "1498"; repStart "-3836"; chr18 rmsk exon 30515517 30515813 410 - . gene_id "ERVLE_18q12.1g"; transcript_id "ERVLE_18q12.1g"; locus "ERVLE_18q12.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3330"; repClass "LTR"; repEnd "810"; repFamily "ERVL"; repLeft "507"; repStart "-4857"; ### ERVLE_18q12.1h ### chr18 rmsk gene 30540183 30541647 . + . gene_id "ERVLE_18q12.1h"; transcript_id "ERVLE_18q12.1h"; locus "ERVLE_18q12.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3331"; model_cov "927"; model_pct "16.4"; chr18 rmsk exon 30540183 30540509 586 + . gene_id "ERVLE_18q12.1h"; transcript_id "ERVLE_18q12.1h"; locus "ERVLE_18q12.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3331"; repClass "LTR"; repEnd "1408"; repFamily "ERVL"; repLeft "-4259"; repStart "1074"; chr18 rmsk exon 30540567 30540864 305 + . gene_id "ERVLE_18q12.1h"; transcript_id "ERVLE_18q12.1h"; locus "ERVLE_18q12.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3331"; repClass "LTR"; repEnd "1805"; repFamily "ERVL"; repLeft "-3862"; repStart "1502"; chr18 rmsk exon 30541019 30541143 872 + . gene_id "ERVLE_18q12.1h"; transcript_id "ERVLE_18q12.1h"; locus "ERVLE_18q12.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3331"; repClass "LTR"; repEnd "2192"; repFamily "ERVL"; repLeft "-3475"; repStart "2072"; chr18 rmsk exon 30541481 30541647 872 + . gene_id "ERVLE_18q12.1h"; transcript_id "ERVLE_18q12.1h"; locus "ERVLE_18q12.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3331"; repClass "LTR"; repEnd "2363"; repFamily "ERVL"; repLeft "-3304"; repStart "2193"; ### ERV316A3_18q12.1c ### chr18 rmsk gene 30567087 30570067 . + . gene_id "ERV316A3_18q12.1c"; transcript_id "ERV316A3_18q12.1c"; locus "ERV316A3_18q12.1c"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2557"; model_cov "1658"; model_pct "31.7"; chr18 rmsk exon 30567087 30567402 371 + . gene_id "ERV316A3_18q12.1c"; transcript_id "ERV316A3_18q12.1c"; locus "ERV316A3_18q12.1c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2557"; repClass "LTR"; repEnd "360"; repFamily "ERVL"; repLeft "-62"; repStart "58"; chr18 rmsk exon 30567918 30569544 4049 + . gene_id "ERV316A3_18q12.1c"; transcript_id "ERV316A3_18q12.1c"; locus "ERV316A3_18q12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2557"; repClass "LTR"; repEnd "5001"; repFamily "ERVL"; repLeft "-225"; repStart "3343"; chr18 rmsk exon 30569597 30570067 728 + . gene_id "ERV316A3_18q12.1c"; transcript_id "ERV316A3_18q12.1c"; locus "ERV316A3_18q12.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2557"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### MER41_18q12.1 ### chr18 rmsk gene 30769491 30774178 . + . gene_id "MER41_18q12.1"; transcript_id "MER41_18q12.1"; locus "MER41_18q12.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0501"; model_cov "5075"; model_pct "85.4"; chr18 rmsk exon 30769491 30770043 3971 + . gene_id "MER41_18q12.1"; transcript_id "MER41_18q12.1"; locus "MER41_18q12.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0501"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 30770095 30770535 2761 + . gene_id "MER41_18q12.1"; transcript_id "MER41_18q12.1"; locus "MER41_18q12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0501"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-5321"; repStart "77"; chr18 rmsk exon 30770516 30773626 12738 + . gene_id "MER41_18q12.1"; transcript_id "MER41_18q12.1"; locus "MER41_18q12.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0501"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "1416"; chr18 rmsk exon 30773628 30774178 3879 + . gene_id "MER41_18q12.1"; transcript_id "MER41_18q12.1"; locus "MER41_18q12.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0501"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERV316A3_18q12.1d ### chr18 rmsk gene 30792657 30793871 . - . gene_id "ERV316A3_18q12.1d"; transcript_id "ERV316A3_18q12.1d"; locus "ERV316A3_18q12.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2558"; model_cov "908"; model_pct "17.4"; chr18 rmsk exon 30792657 30792811 2440 - . gene_id "ERV316A3_18q12.1d"; transcript_id "ERV316A3_18q12.1d"; locus "ERV316A3_18q12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2558"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "4391"; repStart "-703"; chr18 rmsk exon 30793110 30793871 2440 - . gene_id "ERV316A3_18q12.1d"; transcript_id "ERV316A3_18q12.1d"; locus "ERV316A3_18q12.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2558"; repClass "LTR"; repEnd "4390"; repFamily "ERVL"; repLeft "3614"; repStart "-836"; ### ERV316A3_18q12.1e ### chr18 rmsk gene 31186778 31187319 . + . gene_id "ERV316A3_18q12.1e"; transcript_id "ERV316A3_18q12.1e"; locus "ERV316A3_18q12.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2559"; model_cov "540"; model_pct "10.3"; chr18 rmsk exon 31186778 31187319 1062 + . gene_id "ERV316A3_18q12.1e"; transcript_id "ERV316A3_18q12.1e"; locus "ERV316A3_18q12.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2559"; repClass "LTR"; repEnd "3715"; repFamily "ERVL"; repLeft "-1511"; repStart "3175"; ### HERVH_18q12.1b ### chr18 rmsk gene 31284199 31289927 . - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1121"; model_cov "6073"; model_pct "78.7"; chr18 rmsk exon 31284199 31284600 2515 - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1121"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr18 rmsk exon 31284601 31285181 3493 - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1121"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr18 rmsk exon 31285175 31285438 1442 - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1121"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5749"; repStart "-1697"; chr18 rmsk exon 31285436 31289524 14817 - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1121"; repClass "LTR"; repEnd "6310"; repFamily "ERV1"; repLeft "1060"; repStart "-1403"; chr18 rmsk exon 31289527 31289927 2096 - . gene_id "HERVH_18q12.1b"; transcript_id "HERVH_18q12.1b"; locus "HERVH_18q12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1121"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; ### HERVL66_18q12.1 ### chr18 rmsk gene 31492660 31497030 . + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0023"; model_cov "3297"; model_pct "76.2"; chr18 rmsk exon 31492660 31493064 4164 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-204"; repStart "1"; chr18 rmsk exon 31493100 31493327 4164 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-1"; repStart "407"; chr18 rmsk exon 31493328 31495103 12915 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1"; chr18 rmsk exon 31495084 31495733 4653 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-997"; repStart "2654"; chr18 rmsk exon 31495736 31496467 4411 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "3506"; chr18 rmsk exon 31496468 31497030 3619 + . gene_id "HERVL66_18q12.1"; transcript_id "HERVL66_18q12.1"; locus "HERVL66_18q12.1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0023"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP3B_18q12.1 ### chr18 rmsk gene 31741642 31744796 . - . gene_id "HUERSP3B_18q12.1"; transcript_id "HUERSP3B_18q12.1"; locus "HUERSP3B_18q12.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0122"; model_cov "1935"; model_pct "26.1"; chr18 rmsk exon 31741642 31742824 9048 - . gene_id "HUERSP3B_18q12.1"; transcript_id "HUERSP3B_18q12.1"; locus "HUERSP3B_18q12.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0122"; repClass "LTR"; repEnd "1940"; repFamily "ERV1"; repLeft "759"; repStart "-5478"; chr18 rmsk exon 31743135 31743431 9048 - . gene_id "HUERSP3B_18q12.1"; transcript_id "HUERSP3B_18q12.1"; locus "HUERSP3B_18q12.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0122"; repClass "LTR"; repEnd "758"; repFamily "ERV1"; repLeft "425"; repStart "-6660"; chr18 rmsk exon 31743743 31744184 9048 - . gene_id "HUERSP3B_18q12.1"; transcript_id "HUERSP3B_18q12.1"; locus "HUERSP3B_18q12.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0122"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "3"; repStart "-6994"; chr18 rmsk exon 31744187 31744796 3053 - . gene_id "HUERSP3B_18q12.1"; transcript_id "HUERSP3B_18q12.1"; locus "HUERSP3B_18q12.1"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0122"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_18q12.1b ### chr18 rmsk gene 31799037 31800835 . + . gene_id "HERVL_18q12.1b"; transcript_id "HERVL_18q12.1b"; locus "HERVL_18q12.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1173"; model_cov "857"; model_pct "15.2"; chr18 rmsk exon 31799037 31799252 1569 + . gene_id "HERVL_18q12.1b"; transcript_id "HERVL_18q12.1b"; locus "HERVL_18q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1173"; repClass "LTR"; repEnd "222"; repFamily "ERVL"; repLeft "-222"; repStart "1"; chr18 rmsk exon 31799260 31799650 7115 + . gene_id "HERVL_18q12.1b"; transcript_id "HERVL_18q12.1b"; locus "HERVL_18q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1173"; repClass "LTR"; repEnd "3343"; repFamily "ERVL"; repLeft "-2311"; repStart "2954"; chr18 rmsk exon 31799960 31800437 7115 + . gene_id "HERVL_18q12.1b"; transcript_id "HERVL_18q12.1b"; locus "HERVL_18q12.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1173"; repClass "LTR"; repEnd "3812"; repFamily "ERVL"; repLeft "-1842"; repStart "3344"; chr18 rmsk exon 31800438 31800835 2175 + . gene_id "HERVL_18q12.1b"; transcript_id "HERVL_18q12.1b"; locus "HERVL_18q12.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1173"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "72"; ### HERVH_18q12.1c ### chr18 rmsk gene 31803783 31810056 . + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1122"; model_cov "5630"; model_pct "73.0"; chr18 rmsk exon 31803783 31804182 2659 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr18 rmsk exon 31804185 31807202 20416 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr18 rmsk exon 31807197 31807343 864 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chr18 rmsk exon 31807336 31809060 8896 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4537"; chr18 rmsk exon 31809062 31809278 1395 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr18 rmsk exon 31809277 31809655 2338 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr18 rmsk exon 31809656 31810056 2552 + . gene_id "HERVH_18q12.1c"; transcript_id "HERVH_18q12.1c"; locus "HERVH_18q12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1122"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10F_18q12.1 ### chr18 rmsk gene 31974061 31979255 . - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0106"; model_cov "4370"; model_pct "56.5"; chr18 rmsk exon 31974061 31974542 1714 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "6"; repStart "0"; chr18 rmsk exon 31974548 31974778 1213 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "7499"; repStart "0"; chr18 rmsk exon 31974762 31974833 394 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "7412"; repFamily "ERV1"; repLeft "7339"; repStart "-325"; chr18 rmsk exon 31974841 31975121 1629 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "6842"; repFamily "ERV1"; repLeft "6564"; repStart "-895"; chr18 rmsk exon 31975140 31977251 12052 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "5743"; repFamily "ERV1"; repLeft "3611"; repStart "-1994"; chr18 rmsk exon 31977243 31977423 878 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "3428"; repFamily "ERV1"; repLeft "3250"; repStart "-4309"; chr18 rmsk exon 31977458 31977513 268 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "2055"; repFamily "ERV1"; repLeft "2000"; repStart "-5682"; chr18 rmsk exon 31977499 31977586 413 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "1882"; repFamily "ERV1"; repLeft "1793"; repStart "-5855"; chr18 rmsk exon 31977609 31978329 3530 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "1565"; repFamily "ERV1"; repLeft "819"; repStart "-6172"; chr18 rmsk exon 31978325 31978744 1307 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "141"; repStart "-7015"; chr18 rmsk exon 31978746 31979255 1693 - . gene_id "HERVIP10F_18q12.1"; transcript_id "HERVIP10F_18q12.1"; locus "HERVIP10F_18q12.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0106"; repClass "LTR"; repEnd "543"; repFamily "ERV1"; repLeft "1"; repStart "-4"; ### HERVH_18q12.1d ### chr18 rmsk gene 32000483 32006281 . + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1123"; model_cov "5574"; model_pct "72.3"; chr18 rmsk exon 32000483 32000946 3899 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 32000947 32003849 8754 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1"; chr18 rmsk exon 32003850 32005118 4282 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "5908"; repFamily "ERV1"; repLeft "-1805"; repStart "3979"; chr18 rmsk exon 32005109 32005369 1628 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chr18 rmsk exon 32005363 32005934 3560 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr18 rmsk exon 32005935 32006238 1883 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "304"; repFamily "ERV1"; repLeft "-160"; repStart "1"; chr18 rmsk exon 32006224 32006281 381 + . gene_id "HERVH_18q12.1d"; transcript_id "HERVH_18q12.1d"; locus "HERVH_18q12.1d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1123"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "407"; ### ERVL_18q12.1a ### chr18 rmsk gene 32502265 32504105 . + . gene_id "ERVL_18q12.1a"; transcript_id "ERVL_18q12.1a"; locus "ERVL_18q12.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0420"; model_cov "1184"; model_pct "20.6"; chr18 rmsk exon 32502265 32502348 255 + . gene_id "ERVL_18q12.1a"; transcript_id "ERVL_18q12.1a"; locus "ERVL_18q12.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0420"; repClass "LTR"; repEnd "2543"; repFamily "ERVL"; repLeft "-3214"; repStart "2460"; chr18 rmsk exon 32502625 32503182 1207 + . gene_id "ERVL_18q12.1a"; transcript_id "ERVL_18q12.1a"; locus "ERVL_18q12.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0420"; repClass "LTR"; repEnd "3510"; repFamily "ERVL"; repLeft "-2247"; repStart "2862"; chr18 rmsk exon 32503526 32503633 1207 + . gene_id "ERVL_18q12.1a"; transcript_id "ERVL_18q12.1a"; locus "ERVL_18q12.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0420"; repClass "LTR"; repEnd "3604"; repFamily "ERVL"; repLeft "-2153"; repStart "3511"; chr18 rmsk exon 32503750 32504105 1112 + . gene_id "ERVL_18q12.1a"; transcript_id "ERVL_18q12.1a"; locus "ERVL_18q12.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0420"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "-1621"; repStart "3776"; ### ERV316A3_18q12.1f ### chr18 rmsk gene 32504207 32505146 . - . gene_id "ERV316A3_18q12.1f"; transcript_id "ERV316A3_18q12.1f"; locus "ERV316A3_18q12.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2560"; model_cov "967"; model_pct "18.5"; chr18 rmsk exon 32504207 32505146 833 - . gene_id "ERV316A3_18q12.1f"; transcript_id "ERV316A3_18q12.1f"; locus "ERV316A3_18q12.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2560"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "3948"; repStart "-311"; ### ERVLE_18q12.1i ### chr18 rmsk gene 32505261 32507097 . - . gene_id "ERVLE_18q12.1i"; transcript_id "ERVLE_18q12.1i"; locus "ERVLE_18q12.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3334"; model_cov "1849"; model_pct "32.6"; chr18 rmsk exon 32505261 32505321 1762 - . gene_id "ERVLE_18q12.1i"; transcript_id "ERVLE_18q12.1i"; locus "ERVLE_18q12.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3334"; repClass "LTR"; repEnd "4210"; repFamily "ERVL"; repLeft "4154"; repStart "-1457"; chr18 rmsk exon 32505404 32506947 2214 - . gene_id "ERVLE_18q12.1i"; transcript_id "ERVLE_18q12.1i"; locus "ERVLE_18q12.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3334"; repClass "LTR"; repEnd "4149"; repFamily "ERVL"; repLeft "2494"; repStart "-1518"; chr18 rmsk exon 32506962 32507097 258 - . gene_id "ERVLE_18q12.1i"; transcript_id "ERVLE_18q12.1i"; locus "ERVLE_18q12.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3334"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "2620"; repStart "-2909"; ### ERVLB4_18q12.1b ### chr18 rmsk gene 33116812 33121415 . + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1621"; model_cov "2081"; model_pct "36.4"; chr18 rmsk exon 33116812 33117528 3811 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "-1392"; repStart "3620"; chr18 rmsk exon 33117735 33117788 3811 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "4401"; repFamily "ERVL"; repLeft "-1313"; repStart "4323"; chr18 rmsk exon 33118025 33118491 1930 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "-847"; repStart "4417"; chr18 rmsk exon 33120198 33121027 2904 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4862"; chr18 rmsk exon 33121028 33121232 653 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "208"; repFamily "ERVL"; repLeft "-189"; repStart "1"; chr18 rmsk exon 33121338 33121415 236 + . gene_id "ERVLB4_18q12.1b"; transcript_id "ERVLB4_18q12.1b"; locus "ERVLB4_18q12.1b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1621"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-75"; repStart "253"; ### ERVLE_18q12.1j ### chr18 rmsk gene 33186722 33190368 . + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3336"; model_cov "1785"; model_pct "31.5"; chr18 rmsk exon 33186722 33186927 488 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "196"; repFamily "ERVL"; repLeft "-432"; repStart "3"; chr18 rmsk exon 33187302 33187352 488 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "250"; repFamily "ERVL"; repLeft "-378"; repStart "197"; chr18 rmsk exon 33187359 33188150 3023 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "-4206"; repStart "624"; chr18 rmsk exon 33188161 33188262 447 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "4666"; repFamily "ERVL"; repLeft "-1001"; repStart "4562"; chr18 rmsk exon 33188920 33189747 2397 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4823"; chr18 rmsk exon 33189753 33190368 1815 + . gene_id "ERVLE_18q12.1j"; transcript_id "ERVLE_18q12.1j"; locus "ERVLE_18q12.1j"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3336"; repClass "LTR"; repEnd "628"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### HERV3_18q12.1a ### chr18 rmsk gene 33311957 33313918 . + . gene_id "HERV3_18q12.1a"; transcript_id "HERV3_18q12.1a"; locus "HERV3_18q12.1a"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0062"; model_cov "1342"; model_pct "15.9"; chr18 rmsk exon 33311957 33312391 478 + . gene_id "HERV3_18q12.1a"; transcript_id "HERV3_18q12.1a"; locus "HERV3_18q12.1a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0062"; repClass "LTR"; repEnd "3437"; repFamily "ERV1"; repLeft "-4989"; repStart "3025"; chr18 rmsk exon 33312464 33313324 674 + . gene_id "HERV3_18q12.1a"; transcript_id "HERV3_18q12.1a"; locus "HERV3_18q12.1a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0062"; repClass "LTR"; repEnd "4725"; repFamily "ERV1"; repLeft "-3701"; repStart "3855"; chr18 rmsk exon 33313854 33313918 485 + . gene_id "HERV3_18q12.1a"; transcript_id "HERV3_18q12.1a"; locus "HERV3_18q12.1a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0062"; repClass "LTR"; repEnd "6211"; repFamily "ERV1"; repLeft "-2215"; repStart "6151"; ### HERV3_18q12.1b ### chr18 rmsk gene 33314231 33315471 . + . gene_id "HERV3_18q12.1b"; transcript_id "HERV3_18q12.1b"; locus "HERV3_18q12.1b"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0063"; model_cov "926"; model_pct "11.0"; chr18 rmsk exon 33314231 33314506 485 + . gene_id "HERV3_18q12.1b"; transcript_id "HERV3_18q12.1b"; locus "HERV3_18q12.1b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0063"; repClass "LTR"; repEnd "5787"; repFamily "ERV1"; repLeft "-2639"; repStart "5304"; chr18 rmsk exon 33315022 33315471 413 + . gene_id "HERV3_18q12.1b"; transcript_id "HERV3_18q12.1b"; locus "HERV3_18q12.1b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0063"; repClass "LTR"; repEnd "8106"; repFamily "ERV1"; repLeft "-320"; repStart "7663"; ### ERVLE_18q12.1k ### chr18 rmsk gene 33454066 33455027 . - . gene_id "ERVLE_18q12.1k"; transcript_id "ERVLE_18q12.1k"; locus "ERVLE_18q12.1k"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3337"; model_cov "926"; model_pct "16.3"; chr18 rmsk exon 33454066 33454386 567 - . gene_id "ERVLE_18q12.1k"; transcript_id "ERVLE_18q12.1k"; locus "ERVLE_18q12.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3337"; repClass "LTR"; repEnd "3142"; repFamily "ERVL"; repLeft "2814"; repStart "-2525"; chr18 rmsk exon 33454433 33455027 350 - . gene_id "ERVLE_18q12.1k"; transcript_id "ERVLE_18q12.1k"; locus "ERVLE_18q12.1k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3337"; repClass "LTR"; repEnd "2425"; repFamily "ERVL"; repLeft "1827"; repStart "-3242"; ### MER61_18q12.1b ### chr18 rmsk gene 33560623 33566942 . - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0346"; model_cov "4619"; model_pct "88.5"; chr18 rmsk exon 33560623 33561014 1981 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0346"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr18 rmsk exon 33561024 33561050 24321 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "5159"; repStart "-11"; chr18 rmsk exon 33561133 33563962 24321 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "2307"; repStart "-59"; chr18 rmsk exon 33564267 33565207 24321 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "2306"; repFamily "ERV1"; repLeft "1362"; repStart "-2911"; chr18 rmsk exon 33565203 33565461 1754 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "944"; repStart "-4004"; chr18 rmsk exon 33565462 33565859 2396 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "445"; repStart "-4377"; chr18 rmsk exon 33566234 33566341 311 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0346"; repClass "LTR"; repEnd "-1119"; repFamily "ERV1"; repLeft "-1232"; repStart "-6336"; chr18 rmsk exon 33566531 33566942 1864 - . gene_id "MER61_18q12.1b"; transcript_id "MER61_18q12.1b"; locus "MER61_18q12.1b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0346"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "7"; repStart "0"; ### ERVLE_18q12.1l ### chr18 rmsk gene 33795616 33798448 . - . gene_id "ERVLE_18q12.1l"; transcript_id "ERVLE_18q12.1l"; locus "ERVLE_18q12.1l"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3338"; model_cov "3024"; model_pct "53.4"; chr18 rmsk exon 33795616 33796955 5306 - . gene_id "ERVLE_18q12.1l"; transcript_id "ERVLE_18q12.1l"; locus "ERVLE_18q12.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3338"; repClass "LTR"; repEnd "4576"; repFamily "ERVL"; repLeft "3187"; repStart "-1091"; chr18 rmsk exon 33797016 33798448 5306 - . gene_id "ERVLE_18q12.1l"; transcript_id "ERVLE_18q12.1l"; locus "ERVLE_18q12.1l"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3338"; repClass "LTR"; repEnd "3259"; repFamily "ERVL"; repLeft "1624"; repStart "-2408"; ### ERVLB4_18q12.1c ### chr18 rmsk gene 33815751 33818565 . + . gene_id "ERVLB4_18q12.1c"; transcript_id "ERVLB4_18q12.1c"; locus "ERVLB4_18q12.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1622"; model_cov "2410"; model_pct "42.2"; chr18 rmsk exon 33815751 33818177 13766 + . gene_id "ERVLB4_18q12.1c"; transcript_id "ERVLB4_18q12.1c"; locus "ERVLB4_18q12.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1622"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3304"; chr18 rmsk exon 33818178 33818565 1102 + . gene_id "ERVLB4_18q12.1c"; transcript_id "ERVLB4_18q12.1c"; locus "ERVLB4_18q12.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1622"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-81"; repStart "-46"; ### LTR57_18q12.1 ### chr18 rmsk gene 33899879 33901603 . + . gene_id "LTR57_18q12.1"; transcript_id "LTR57_18q12.1"; locus "LTR57_18q12.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0163"; model_cov "1292"; model_pct "24.2"; chr18 rmsk exon 33899879 33900039 5802 + . gene_id "LTR57_18q12.1"; transcript_id "LTR57_18q12.1"; locus "LTR57_18q12.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0163"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "-4875"; repStart "303"; chr18 rmsk exon 33900428 33901603 5802 + . gene_id "LTR57_18q12.1"; transcript_id "LTR57_18q12.1"; locus "LTR57_18q12.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0163"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "-3747"; repStart "469"; ### ERVL_18q12.1b ### chr18 rmsk gene 34006254 34008452 . + . gene_id "ERVL_18q12.1b"; transcript_id "ERVL_18q12.1b"; locus "ERVL_18q12.1b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0423"; model_cov "1499"; model_pct "26.0"; chr18 rmsk exon 34006254 34006438 1207 + . gene_id "ERVL_18q12.1b"; transcript_id "ERVL_18q12.1b"; locus "ERVL_18q12.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0423"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "-335"; repStart "1"; chr18 rmsk exon 34006439 34007899 8351 + . gene_id "ERVL_18q12.1b"; transcript_id "ERVL_18q12.1b"; locus "ERVL_18q12.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0423"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr18 rmsk exon 34007900 34008359 2582 + . gene_id "ERVL_18q12.1b"; transcript_id "ERVL_18q12.1b"; locus "ERVL_18q12.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0423"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chr18 rmsk exon 34008414 34008452 2582 + . gene_id "ERVL_18q12.1b"; transcript_id "ERVL_18q12.1b"; locus "ERVL_18q12.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0423"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "462"; ### ERVLE_18q12.1m ### chr18 rmsk gene 34312666 34315397 . - . gene_id "ERVLE_18q12.1m"; transcript_id "ERVLE_18q12.1m"; locus "ERVLE_18q12.1m"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3339"; model_cov "2476"; model_pct "43.7"; chr18 rmsk exon 34312666 34313401 1288 - . gene_id "ERVLE_18q12.1m"; transcript_id "ERVLE_18q12.1m"; locus "ERVLE_18q12.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3339"; repClass "LTR"; repEnd "5159"; repFamily "ERVL"; repLeft "4416"; repStart "-508"; chr18 rmsk exon 34313539 34314638 1035 - . gene_id "ERVLE_18q12.1m"; transcript_id "ERVLE_18q12.1m"; locus "ERVLE_18q12.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3339"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "2464"; repStart "-2010"; chr18 rmsk exon 34314889 34315397 1199 - . gene_id "ERVLE_18q12.1m"; transcript_id "ERVLE_18q12.1m"; locus "ERVLE_18q12.1m"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3339"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "1715"; repStart "-3412"; ### ERVLE_18q12.1n ### chr18 rmsk gene 34345807 34347554 . - . gene_id "ERVLE_18q12.1n"; transcript_id "ERVLE_18q12.1n"; locus "ERVLE_18q12.1n"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3340"; model_cov "1781"; model_pct "31.4"; chr18 rmsk exon 34345807 34346488 2907 - . gene_id "ERVLE_18q12.1n"; transcript_id "ERVLE_18q12.1n"; locus "ERVLE_18q12.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3340"; repClass "LTR"; repEnd "5018"; repFamily "ERVL"; repLeft "4318"; repStart "-649"; chr18 rmsk exon 34346496 34347554 4764 - . gene_id "ERVLE_18q12.1n"; transcript_id "ERVLE_18q12.1n"; locus "ERVLE_18q12.1n"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3340"; repClass "LTR"; repEnd "4160"; repFamily "ERVL"; repLeft "3079"; repStart "-1507"; ### ERV316A3_18q12.1g ### chr18 rmsk gene 34442832 34444830 . - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2562"; model_cov "1173"; model_pct "22.4"; chr18 rmsk exon 34442832 34443276 964 - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2562"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 34443277 34443519 801 - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2562"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4978"; repStart "0"; chr18 rmsk exon 34443570 34444370 2567 - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2562"; repClass "LTR"; repEnd "4981"; repFamily "ERVL"; repLeft "4198"; repStart "-245"; chr18 rmsk exon 34444371 34444519 289 - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2562"; repClass "LTR"; repEnd "155"; repFamily "ERVL"; repLeft "13"; repStart "-5071"; chr18 rmsk exon 34444527 34444830 1066 - . gene_id "ERV316A3_18q12.1g"; transcript_id "ERV316A3_18q12.1g"; locus "ERV316A3_18q12.1g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2562"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "176"; repStart "-2"; ### HERVL_18q12.1c ### chr18 rmsk gene 34732838 34735414 . - . gene_id "HERVL_18q12.1c"; transcript_id "HERVL_18q12.1c"; locus "HERVL_18q12.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1174"; model_cov "2171"; model_pct "38.4"; chr18 rmsk exon 34732838 34735001 16677 - . gene_id "HERVL_18q12.1c"; transcript_id "HERVL_18q12.1c"; locus "HERVL_18q12.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1174"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1"; repStart "-3482"; chr18 rmsk exon 34735002 34735414 2387 - . gene_id "HERVL_18q12.1c"; transcript_id "HERVL_18q12.1c"; locus "HERVL_18q12.1c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1174"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_18q12.2a ### chr18 rmsk gene 35216028 35222512 . + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1124"; model_cov "5967"; model_pct "77.4"; chr18 rmsk exon 35216028 35216409 2250 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "22"; chr18 rmsk exon 35216413 35219184 14338 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr18 rmsk exon 35219164 35220022 5542 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr18 rmsk exon 35220025 35220204 1203 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "-3046"; repStart "4488"; chr18 rmsk exon 35220204 35222109 12599 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5772"; chr18 rmsk exon 35222110 35222512 2766 + . gene_id "HERVH_18q12.2a"; transcript_id "HERVH_18q12.2a"; locus "HERVH_18q12.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1124"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_18q12.2a ### chr18 rmsk gene 35294063 35296087 . - . gene_id "ERVLE_18q12.2a"; transcript_id "ERVLE_18q12.2a"; locus "ERVLE_18q12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3342"; model_cov "1921"; model_pct "33.9"; chr18 rmsk exon 35294063 35295820 2720 - . gene_id "ERVLE_18q12.2a"; transcript_id "ERVLE_18q12.2a"; locus "ERVLE_18q12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3342"; repClass "LTR"; repEnd "5274"; repFamily "ERVL"; repLeft "3419"; repStart "-393"; chr18 rmsk exon 35296021 35296087 293 - . gene_id "ERVLE_18q12.2a"; transcript_id "ERVLE_18q12.2a"; locus "ERVLE_18q12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3342"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "3087"; repStart "-2514"; ### HERVL40_18q12.2 ### chr18 rmsk gene 35302340 35304455 . + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0406"; model_cov "1530"; model_pct "27.7"; chr18 rmsk exon 35302340 35302644 1281 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "100"; chr18 rmsk exon 35302659 35303220 2128 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "-4960"; repStart "18"; chr18 rmsk exon 35303292 35303428 347 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "722"; repFamily "ERVL"; repLeft "-4808"; repStart "593"; chr18 rmsk exon 35303448 35303571 407 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-3920"; repStart "1481"; chr18 rmsk exon 35303576 35303708 671 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "2652"; repFamily "ERVL"; repLeft "-2878"; repStart "2524"; chr18 rmsk exon 35303726 35303822 590 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "3898"; repFamily "ERVL"; repLeft "-1632"; repStart "3802"; chr18 rmsk exon 35303953 35304455 2019 + . gene_id "HERVL40_18q12.2"; transcript_id "HERVL40_18q12.2"; locus "HERVL40_18q12.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0406"; repClass "LTR"; repEnd "4386"; repFamily "ERVL"; repLeft "-1144"; repStart "3890"; ### HERVH_18q12.2b ### chr18 rmsk gene 35356140 35361791 . - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1125"; model_cov "5128"; model_pct "66.5"; chr18 rmsk exon 35356140 35356551 2833 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr18 rmsk exon 35356552 35356927 2363 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr18 rmsk exon 35356928 35357164 1456 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr18 rmsk exon 35357145 35357807 4447 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr18 rmsk exon 35357810 35358663 5946 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr18 rmsk exon 35358643 35361381 15049 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr18 rmsk exon 35361384 35361791 2756 - . gene_id "HERVH_18q12.2b"; transcript_id "HERVH_18q12.2b"; locus "HERVH_18q12.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1125"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_18q12.2b ### chr18 rmsk gene 35386992 35388405 . + . gene_id "ERVLE_18q12.2b"; transcript_id "ERVLE_18q12.2b"; locus "ERVLE_18q12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3343"; model_cov "1422"; model_pct "25.1"; chr18 rmsk exon 35386992 35387219 957 + . gene_id "ERVLE_18q12.2b"; transcript_id "ERVLE_18q12.2b"; locus "ERVLE_18q12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3343"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "-1472"; repStart "3960"; chr18 rmsk exon 35387235 35388405 4323 + . gene_id "ERVLE_18q12.2b"; transcript_id "ERVLE_18q12.2b"; locus "ERVLE_18q12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3343"; repClass "LTR"; repEnd "5355"; repFamily "ERVL"; repLeft "-312"; repStart "4168"; ### HERVI_18q12.2 ### chr18 rmsk gene 35832090 35840521 . + . gene_id "HERVI_18q12.2"; transcript_id "HERVI_18q12.2"; locus "HERVI_18q12.2"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0034"; model_cov "7782"; model_pct "100.0"; chr18 rmsk exon 35832090 35832384 1120 + . gene_id "HERVI_18q12.2"; transcript_id "HERVI_18q12.2"; locus "HERVI_18q12.2"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0034"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-62"; repStart "146"; chr18 rmsk exon 35832385 35840093 27246 + . gene_id "HERVI_18q12.2"; transcript_id "HERVI_18q12.2"; locus "HERVI_18q12.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0034"; repClass "LTR"; repEnd "7784"; repFamily "ERV1"; repLeft "-1"; repStart "2"; chr18 rmsk exon 35840173 35840521 1122 + . gene_id "HERVI_18q12.2"; transcript_id "HERVI_18q12.2"; locus "HERVI_18q12.2"; repName "LTR10B2"; geneRegion "ltr"; locid "HERVI-int_0034"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "0"; repStart "144"; ### HERVH_18q12.2c ### chr18 rmsk gene 35844062 35850418 . + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1126"; model_cov "5756"; model_pct "74.6"; chr18 rmsk exon 35844062 35844501 3057 + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1126"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "8"; chr18 rmsk exon 35844505 35849387 20972 + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1126"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "1"; chr18 rmsk exon 35849389 35849604 1376 + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1126"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr18 rmsk exon 35849605 35849980 2278 + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1126"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr18 rmsk exon 35849981 35850418 3055 + . gene_id "HERVH_18q12.2c"; transcript_id "HERVH_18q12.2c"; locus "HERVH_18q12.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1126"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "-10"; repStart "1"; ### HERVL_18q12.2a ### chr18 rmsk gene 35855034 35861544 . + . gene_id "HERVL_18q12.2a"; transcript_id "HERVL_18q12.2a"; locus "HERVL_18q12.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1175"; model_cov "5653"; model_pct "100.0"; chr18 rmsk exon 35855034 35855387 2851 + . gene_id "HERVL_18q12.2a"; transcript_id "HERVL_18q12.2a"; locus "HERVL_18q12.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1175"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "-69"; repStart "3"; chr18 rmsk exon 35855427 35855491 2851 + . gene_id "HERVL_18q12.2a"; transcript_id "HERVL_18q12.2a"; locus "HERVL_18q12.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1175"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "376"; chr18 rmsk exon 35855492 35861049 44246 + . gene_id "HERVL_18q12.2a"; transcript_id "HERVL_18q12.2a"; locus "HERVL_18q12.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1175"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 35861050 35861544 3261 + . gene_id "HERVL_18q12.2a"; transcript_id "HERVL_18q12.2a"; locus "HERVL_18q12.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1175"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "1"; ### HUERSP3_18q12.2 ### chr18 rmsk gene 35872830 35880365 . + . gene_id "HUERSP3_18q12.2"; transcript_id "HUERSP3_18q12.2"; locus "HUERSP3_18q12.2"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0184"; model_cov "6783"; model_pct "76.1"; chr18 rmsk exon 35872830 35876411 32122 + . gene_id "HUERSP3_18q12.2"; transcript_id "HUERSP3_18q12.2"; locus "HUERSP3_18q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0184"; repClass "LTR"; repEnd "5025"; repFamily "ERV1"; repLeft "-3894"; repStart "1440"; chr18 rmsk exon 35876768 35878570 32122 + . gene_id "HUERSP3_18q12.2"; transcript_id "HUERSP3_18q12.2"; locus "HUERSP3_18q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0184"; repClass "LTR"; repEnd "6892"; repFamily "ERV1"; repLeft "-2027"; repStart "5026"; chr18 rmsk exon 35879078 35880365 1283 + . gene_id "HUERSP3_18q12.2"; transcript_id "HUERSP3_18q12.2"; locus "HUERSP3_18q12.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0184"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "-3"; repStart "7584"; ### MER4B_18q12.2 ### chr18 rmsk gene 36150479 36153358 . - . gene_id "MER4B_18q12.2"; transcript_id "MER4B_18q12.2"; locus "MER4B_18q12.2"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0433"; model_cov "1871"; model_pct "27.7"; chr18 rmsk exon 36150479 36151078 9298 - . gene_id "MER4B_18q12.2"; transcript_id "MER4B_18q12.2"; locus "MER4B_18q12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0433"; repClass "LTR"; repEnd "4959"; repFamily "ERV1"; repLeft "4357"; repStart "-1799"; chr18 rmsk exon 36151383 36151522 9298 - . gene_id "MER4B_18q12.2"; transcript_id "MER4B_18q12.2"; locus "MER4B_18q12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0433"; repClass "LTR"; repEnd "4356"; repFamily "ERV1"; repLeft "4237"; repStart "-2402"; chr18 rmsk exon 36152217 36153358 9298 - . gene_id "MER4B_18q12.2"; transcript_id "MER4B_18q12.2"; locus "MER4B_18q12.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0433"; repClass "LTR"; repEnd "4236"; repFamily "ERV1"; repLeft "3086"; repStart "-2522"; ### ERVLB4_18q12.2a ### chr18 rmsk gene 37117655 37119209 . - . gene_id "ERVLB4_18q12.2a"; transcript_id "ERVLB4_18q12.2a"; locus "ERVLB4_18q12.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1624"; model_cov "1297"; model_pct "22.7"; chr18 rmsk exon 37117655 37118000 6116 - . gene_id "ERVLB4_18q12.2a"; transcript_id "ERVLB4_18q12.2a"; locus "ERVLB4_18q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1624"; repClass "LTR"; repEnd "5643"; repFamily "ERVL"; repLeft "5283"; repStart "-71"; chr18 rmsk exon 37118295 37119209 6116 - . gene_id "ERVLB4_18q12.2a"; transcript_id "ERVLB4_18q12.2a"; locus "ERVLB4_18q12.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1624"; repClass "LTR"; repEnd "5282"; repFamily "ERVL"; repLeft "4345"; repStart "-432"; ### HERVL_18q12.2b ### chr18 rmsk gene 37875262 37882073 . + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_1176"; model_cov "4198"; model_pct "74.2"; chr18 rmsk exon 37875262 37875407 1195 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "797"; repFamily "ERVL"; repLeft "-4857"; repStart "652"; chr18 rmsk exon 37876806 37877189 3019 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr18 rmsk exon 37877221 37877260 3019 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; chr18 rmsk exon 37877261 37879995 22035 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "2747"; repFamily "ERVL"; repLeft "-2907"; repStart "1"; chr18 rmsk exon 37879995 37880591 10062 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "-694"; repStart "4345"; chr18 rmsk exon 37880919 37881623 10062 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "4961"; chr18 rmsk exon 37881624 37882073 3153 + . gene_id "HERVL_18q12.2b"; transcript_id "HERVL_18q12.2b"; locus "HERVL_18q12.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1176"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_18q12.2c ### chr18 rmsk gene 37953179 37953737 . - . gene_id "ERVLE_18q12.2c"; transcript_id "ERVLE_18q12.2c"; locus "ERVLE_18q12.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3344"; model_cov "596"; model_pct "10.5"; chr18 rmsk exon 37953179 37953737 1084 - . gene_id "ERVLE_18q12.2c"; transcript_id "ERVLE_18q12.2c"; locus "ERVLE_18q12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3344"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "5071"; repStart "0"; ### ERVLE_18q12.2d ### chr18 rmsk gene 37965586 37967634 . + . gene_id "ERVLE_18q12.2d"; transcript_id "ERVLE_18q12.2d"; locus "ERVLE_18q12.2d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3345"; model_cov "1735"; model_pct "30.6"; chr18 rmsk exon 37965586 37965947 864 + . gene_id "ERVLE_18q12.2d"; transcript_id "ERVLE_18q12.2d"; locus "ERVLE_18q12.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3345"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "-200"; repStart "5"; chr18 rmsk exon 37965951 37967634 8817 + . gene_id "ERVLE_18q12.2d"; transcript_id "ERVLE_18q12.2d"; locus "ERVLE_18q12.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3345"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "-1345"; repStart "2587"; ### ERVLE_18q12.2e ### chr18 rmsk gene 38012690 38014489 . - . gene_id "ERVLE_18q12.2e"; transcript_id "ERVLE_18q12.2e"; locus "ERVLE_18q12.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3346"; model_cov "1685"; model_pct "29.7"; chr18 rmsk exon 38012690 38012946 400 - . gene_id "ERVLE_18q12.2e"; transcript_id "ERVLE_18q12.2e"; locus "ERVLE_18q12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3346"; repClass "LTR"; repEnd "3985"; repFamily "ERVL"; repLeft "3729"; repStart "-1682"; chr18 rmsk exon 38013145 38014489 2807 - . gene_id "ERVLE_18q12.2e"; transcript_id "ERVLE_18q12.2e"; locus "ERVLE_18q12.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3346"; repClass "LTR"; repEnd "3683"; repFamily "ERVL"; repLeft "2254"; repStart "-1984"; ### ERVLB4_18q12.2b ### chr18 rmsk gene 38162864 38165816 . - . gene_id "ERVLB4_18q12.2b"; transcript_id "ERVLB4_18q12.2b"; locus "ERVLB4_18q12.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1625"; model_cov "2491"; model_pct "43.6"; chr18 rmsk exon 38162864 38165288 12665 - . gene_id "ERVLB4_18q12.2b"; transcript_id "ERVLB4_18q12.2b"; locus "ERVLB4_18q12.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1625"; repClass "LTR"; repEnd "2493"; repFamily "ERVL"; repLeft "2"; repStart "-3221"; chr18 rmsk exon 38165290 38165816 2146 - . gene_id "ERVLB4_18q12.2b"; transcript_id "ERVLB4_18q12.2b"; locus "ERVLB4_18q12.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1625"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_18q12.2 ### chr18 rmsk gene 38279023 38280331 . - . gene_id "ERV316A3_18q12.2"; transcript_id "ERV316A3_18q12.2"; locus "ERV316A3_18q12.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2563"; model_cov "714"; model_pct "13.7"; chr18 rmsk exon 38279023 38279106 409 - . gene_id "ERV316A3_18q12.2"; transcript_id "ERV316A3_18q12.2"; locus "ERV316A3_18q12.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2563"; repClass "LTR"; repEnd "95"; repFamily "ERVL"; repLeft "10"; repStart "-343"; chr18 rmsk exon 38279266 38279971 1711 - . gene_id "ERV316A3_18q12.2"; transcript_id "ERV316A3_18q12.2"; locus "ERV316A3_18q12.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2563"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "4164"; repStart "-348"; chr18 rmsk exon 38280001 38280331 625 - . gene_id "ERV316A3_18q12.2"; transcript_id "ERV316A3_18q12.2"; locus "ERV316A3_18q12.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2563"; repClass "LTR"; repEnd "363"; repFamily "ERVL"; repLeft "8"; repStart "-75"; ### ERVLE_18q12.2f ### chr18 rmsk gene 38382310 38383530 . - . gene_id "ERVLE_18q12.2f"; transcript_id "ERVLE_18q12.2f"; locus "ERVLE_18q12.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3347"; model_cov "1232"; model_pct "21.7"; chr18 rmsk exon 38382310 38383530 2959 - . gene_id "ERVLE_18q12.2f"; transcript_id "ERVLE_18q12.2f"; locus "ERVLE_18q12.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3347"; repClass "LTR"; repEnd "4710"; repFamily "ERVL"; repLeft "3478"; repStart "-957"; ### HERVL_18q12.2c ### chr18 rmsk gene 38394176 38396050 . + . gene_id "HERVL_18q12.2c"; transcript_id "HERVL_18q12.2c"; locus "HERVL_18q12.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1177"; model_cov "1426"; model_pct "25.2"; chr18 rmsk exon 38394176 38394938 5753 + . gene_id "HERVL_18q12.2c"; transcript_id "HERVL_18q12.2c"; locus "HERVL_18q12.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1177"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "-1889"; repStart "3003"; chr18 rmsk exon 38394958 38395612 4792 + . gene_id "HERVL_18q12.2c"; transcript_id "HERVL_18q12.2c"; locus "HERVL_18q12.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1177"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4990"; chr18 rmsk exon 38395613 38396050 3104 + . gene_id "HERVL_18q12.2c"; transcript_id "HERVL_18q12.2c"; locus "HERVL_18q12.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1177"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### HERVL_18q12.2d ### chr18 rmsk gene 38671289 38673923 . + . gene_id "HERVL_18q12.2d"; transcript_id "HERVL_18q12.2d"; locus "HERVL_18q12.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1178"; model_cov "2347"; model_pct "41.5"; chr18 rmsk exon 38671289 38673158 14421 + . gene_id "HERVL_18q12.2d"; transcript_id "HERVL_18q12.2d"; locus "HERVL_18q12.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1178"; repClass "LTR"; repEnd "4702"; repFamily "ERVL"; repLeft "-952"; repStart "2814"; chr18 rmsk exon 38673159 38673613 3536 + . gene_id "HERVL_18q12.2d"; transcript_id "HERVL_18q12.2d"; locus "HERVL_18q12.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1178"; repClass "LTR"; repEnd "5633"; repFamily "ERVL"; repLeft "-21"; repStart "5174"; chr18 rmsk exon 38673614 38673707 612 + . gene_id "HERVL_18q12.2d"; transcript_id "HERVL_18q12.2d"; locus "HERVL_18q12.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1178"; repClass "LTR"; repEnd "6"; repFamily "ERVL"; repLeft "-438"; repStart "-87"; chr18 rmsk exon 38673859 38673923 341 + . gene_id "HERVL_18q12.2d"; transcript_id "HERVL_18q12.2d"; locus "HERVL_18q12.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1178"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "380"; ### ERVLB4_18q12.2c ### chr18 rmsk gene 39061630 39064011 . - . gene_id "ERVLB4_18q12.2c"; transcript_id "ERVLB4_18q12.2c"; locus "ERVLB4_18q12.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1626"; model_cov "1999"; model_pct "35.0"; chr18 rmsk exon 39061630 39062051 948 - . gene_id "ERVLB4_18q12.2c"; transcript_id "ERVLB4_18q12.2c"; locus "ERVLB4_18q12.2c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1626"; repClass "LTR"; repEnd "522"; repFamily "ERVL"; repLeft "-6"; repStart "-34"; chr18 rmsk exon 39062055 39064011 10969 - . gene_id "ERVLB4_18q12.2c"; transcript_id "ERVLB4_18q12.2c"; locus "ERVLB4_18q12.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1626"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "3713"; repStart "-2"; ### ERVLB4_18q12.2d ### chr18 rmsk gene 39211356 39214311 . - . gene_id "ERVLB4_18q12.2d"; transcript_id "ERVLB4_18q12.2d"; locus "ERVLB4_18q12.2d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1627"; model_cov "973"; model_pct "17.0"; chr18 rmsk exon 39211356 39211751 1164 - . gene_id "ERVLB4_18q12.2d"; transcript_id "ERVLB4_18q12.2d"; locus "ERVLB4_18q12.2d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1627"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 39211845 39212023 768 - . gene_id "ERVLB4_18q12.2d"; transcript_id "ERVLB4_18q12.2d"; locus "ERVLB4_18q12.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1627"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5352"; repStart "-1"; chr18 rmsk exon 39212744 39212921 1643 - . gene_id "ERVLB4_18q12.2d"; transcript_id "ERVLB4_18q12.2d"; locus "ERVLB4_18q12.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1627"; repClass "LTR"; repEnd "5378"; repFamily "ERVL"; repLeft "5088"; repStart "-336"; chr18 rmsk exon 39213991 39214311 1643 - . gene_id "ERVLB4_18q12.2d"; transcript_id "ERVLB4_18q12.2d"; locus "ERVLB4_18q12.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1627"; repClass "LTR"; repEnd "5130"; repFamily "ERVL"; repLeft "4808"; repStart "-584"; ### MER61_18q12.3a ### chr18 rmsk gene 39795158 39800435 . - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0348"; model_cov "4417"; model_pct "84.7"; chr18 rmsk exon 39795158 39795472 1775 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0348"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "17"; repStart "0"; chr18 rmsk exon 39795474 39799184 21303 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0348"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "1320"; repStart "-1"; chr18 rmsk exon 39799178 39799290 349 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0348"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "632"; repStart "-4440"; chr18 rmsk exon 39799293 39799331 260 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0348"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "511"; repStart "-4668"; chr18 rmsk exon 39799376 39799486 1697 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0348"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "403"; repStart "-4717"; chr18 rmsk exon 39799789 39800030 1697 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0348"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "161"; repStart "-4815"; chr18 rmsk exon 39800102 39800435 1669 - . gene_id "MER61_18q12.3a"; transcript_id "MER61_18q12.3a"; locus "MER61_18q12.3a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0348"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_18q12.3a ### chr18 rmsk gene 39899334 39902259 . + . gene_id "ERV316A3_18q12.3a"; transcript_id "ERV316A3_18q12.3a"; locus "ERV316A3_18q12.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2565"; model_cov "1611"; model_pct "30.8"; chr18 rmsk exon 39899334 39899446 265 + . gene_id "ERV316A3_18q12.3a"; transcript_id "ERV316A3_18q12.3a"; locus "ERV316A3_18q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2565"; repClass "LTR"; repEnd "587"; repFamily "ERVL"; repLeft "-4639"; repStart "473"; chr18 rmsk exon 39900093 39900897 908 + . gene_id "ERV316A3_18q12.3a"; transcript_id "ERV316A3_18q12.3a"; locus "ERV316A3_18q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2565"; repClass "LTR"; repEnd "2098"; repFamily "ERVL"; repLeft "-3128"; repStart "1224"; chr18 rmsk exon 39901624 39902259 1293 + . gene_id "ERV316A3_18q12.3a"; transcript_id "ERV316A3_18q12.3a"; locus "ERV316A3_18q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2565"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "-1569"; repStart "3034"; ### ERVLB4_18q12.3a ### chr18 rmsk gene 39934615 39936712 . + . gene_id "ERVLB4_18q12.3a"; transcript_id "ERVLB4_18q12.3a"; locus "ERVLB4_18q12.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1628"; model_cov "1280"; model_pct "22.4"; chr18 rmsk exon 39934615 39934962 1626 + . gene_id "ERVLB4_18q12.3a"; transcript_id "ERVLB4_18q12.3a"; locus "ERVLB4_18q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1628"; repClass "LTR"; repEnd "3399"; repFamily "ERVL"; repLeft "-2315"; repStart "3023"; chr18 rmsk exon 39934966 39935651 4746 + . gene_id "ERVLB4_18q12.3a"; transcript_id "ERVLB4_18q12.3a"; locus "ERVLB4_18q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1628"; repClass "LTR"; repEnd "5509"; repFamily "ERVL"; repLeft "-205"; repStart "4809"; chr18 rmsk exon 39936022 39936205 4746 + . gene_id "ERVLB4_18q12.3a"; transcript_id "ERVLB4_18q12.3a"; locus "ERVLB4_18q12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1628"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5510"; chr18 rmsk exon 39936206 39936712 2135 + . gene_id "ERVLB4_18q12.3a"; transcript_id "ERVLB4_18q12.3a"; locus "ERVLB4_18q12.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1628"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_18q12.3b ### chr18 rmsk gene 40503578 40504698 . + . gene_id "ERV316A3_18q12.3b"; transcript_id "ERV316A3_18q12.3b"; locus "ERV316A3_18q12.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2566"; model_cov "946"; model_pct "18.1"; chr18 rmsk exon 40503578 40503711 259 + . gene_id "ERV316A3_18q12.3b"; transcript_id "ERV316A3_18q12.3b"; locus "ERV316A3_18q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2566"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2304"; repStart "2786"; chr18 rmsk exon 40503922 40504698 1282 + . gene_id "ERV316A3_18q12.3b"; transcript_id "ERV316A3_18q12.3b"; locus "ERV316A3_18q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2566"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "-921"; repStart "3495"; ### ERVLE_18q12.3a ### chr18 rmsk gene 40560405 40562824 . + . gene_id "ERVLE_18q12.3a"; transcript_id "ERVLE_18q12.3a"; locus "ERVLE_18q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3348"; model_cov "1628"; model_pct "28.7"; chr18 rmsk exon 40560405 40561155 1115 + . gene_id "ERVLE_18q12.3a"; transcript_id "ERVLE_18q12.3a"; locus "ERVLE_18q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3348"; repClass "LTR"; repEnd "759"; repFamily "ERVL"; repLeft "-4908"; repStart "21"; chr18 rmsk exon 40561816 40561998 360 + . gene_id "ERVLE_18q12.3a"; transcript_id "ERVLE_18q12.3a"; locus "ERVLE_18q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3348"; repClass "LTR"; repEnd "1082"; repFamily "ERVL"; repLeft "-4585"; repStart "898"; chr18 rmsk exon 40562087 40562481 713 + . gene_id "ERVLE_18q12.3a"; transcript_id "ERVLE_18q12.3a"; locus "ERVLE_18q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3348"; repClass "LTR"; repEnd "1570"; repFamily "ERVL"; repLeft "-4097"; repStart "1166"; chr18 rmsk exon 40562528 40562824 558 + . gene_id "ERVLE_18q12.3a"; transcript_id "ERVLE_18q12.3a"; locus "ERVLE_18q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3348"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "-3693"; repStart "1672"; ### ERVLE_18q12.3b ### chr18 rmsk gene 42406173 42407605 . + . gene_id "ERVLE_18q12.3b"; transcript_id "ERVLE_18q12.3b"; locus "ERVLE_18q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3350"; model_cov "1492"; model_pct "26.3"; chr18 rmsk exon 42406173 42407605 1618 + . gene_id "ERVLE_18q12.3b"; transcript_id "ERVLE_18q12.3b"; locus "ERVLE_18q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3350"; repClass "LTR"; repEnd "1756"; repFamily "ERVL"; repLeft "-3911"; repStart "264"; ### ERVLE_18q12.3c ### chr18 rmsk gene 42410316 42411787 . + . gene_id "ERVLE_18q12.3c"; transcript_id "ERVLE_18q12.3c"; locus "ERVLE_18q12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3351"; model_cov "1034"; model_pct "18.2"; chr18 rmsk exon 42410316 42410687 831 + . gene_id "ERVLE_18q12.3c"; transcript_id "ERVLE_18q12.3c"; locus "ERVLE_18q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3351"; repClass "LTR"; repEnd "2174"; repFamily "ERVL"; repLeft "-3493"; repStart "1779"; chr18 rmsk exon 42411089 42411200 294 + . gene_id "ERVLE_18q12.3c"; transcript_id "ERVLE_18q12.3c"; locus "ERVLE_18q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3351"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "-2952"; repStart "2604"; chr18 rmsk exon 42411293 42411787 1083 + . gene_id "ERVLE_18q12.3c"; transcript_id "ERVLE_18q12.3c"; locus "ERVLE_18q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3351"; repClass "LTR"; repEnd "3364"; repFamily "ERVL"; repLeft "-2303"; repStart "2836"; ### HERVH_18q12.3a ### chr18 rmsk gene 42461841 42469749 . + . gene_id "HERVH_18q12.3a"; transcript_id "HERVH_18q12.3a"; locus "HERVH_18q12.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1127"; model_cov "7385"; model_pct "95.7"; chr18 rmsk exon 42461841 42462228 2490 + . gene_id "HERVH_18q12.3a"; transcript_id "HERVH_18q12.3a"; locus "HERVH_18q12.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1127"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 42462229 42465288 14783 + . gene_id "HERVH_18q12.3a"; transcript_id "HERVH_18q12.3a"; locus "HERVH_18q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1127"; repClass "LTR"; repEnd "3297"; repFamily "ERV1"; repLeft "-4416"; repStart "1"; chr18 rmsk exon 42465285 42469321 14458 + . gene_id "HERVH_18q12.3a"; transcript_id "HERVH_18q12.3a"; locus "HERVH_18q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1127"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "3624"; chr18 rmsk exon 42469322 42469749 2705 + . gene_id "HERVH_18q12.3a"; transcript_id "HERVH_18q12.3a"; locus "HERVH_18q12.3a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1127"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_18q12.3b ### chr18 rmsk gene 42552441 42558142 . - . gene_id "HERVH_18q12.3b"; transcript_id "HERVH_18q12.3b"; locus "HERVH_18q12.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1128"; model_cov "4922"; model_pct "63.8"; chr18 rmsk exon 42552441 42552832 3152 - . gene_id "HERVH_18q12.3b"; transcript_id "HERVH_18q12.3b"; locus "HERVH_18q12.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1128"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "58"; repStart "-2"; chr18 rmsk exon 42552833 42555057 13288 - . gene_id "HERVH_18q12.3b"; transcript_id "HERVH_18q12.3b"; locus "HERVH_18q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1128"; repClass "LTR"; repEnd "5706"; repFamily "ERV1"; repLeft "3543"; repStart "-2007"; chr18 rmsk exon 42555045 42557690 14148 - . gene_id "HERVH_18q12.3b"; transcript_id "HERVH_18q12.3b"; locus "HERVH_18q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1128"; repClass "LTR"; repEnd "2760"; repFamily "ERV1"; repLeft "1"; repStart "-4953"; chr18 rmsk exon 42557693 42558142 3515 - . gene_id "HERVH_18q12.3b"; transcript_id "HERVH_18q12.3b"; locus "HERVH_18q12.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1128"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_18q12.3c ### chr18 rmsk gene 42737046 42742345 . + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1129"; model_cov "4488"; model_pct "58.2"; chr18 rmsk exon 42737046 42737438 2602 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr18 rmsk exon 42737441 42737854 3014 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "415"; repFamily "ERV1"; repLeft "-7298"; repStart "1"; chr18 rmsk exon 42737853 42740052 14531 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "825"; chr18 rmsk exon 42740047 42740194 872 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr18 rmsk exon 42740194 42740687 3302 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr18 rmsk exon 42740690 42741353 4326 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr18 rmsk exon 42741355 42741570 1317 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr18 rmsk exon 42741571 42741944 2274 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr18 rmsk exon 42741945 42742345 2707 + . gene_id "HERVH_18q12.3c"; transcript_id "HERVH_18q12.3c"; locus "HERVH_18q12.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1129"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_18q12.3d ### chr18 rmsk gene 42991497 42996809 . + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1130"; model_cov "4425"; model_pct "57.4"; chr18 rmsk exon 42991497 42991957 2950 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr18 rmsk exon 42991970 42994288 15477 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "692"; chr18 rmsk exon 42994275 42995147 6333 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chr18 rmsk exon 42995151 42995803 4212 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "-2572"; repStart "4488"; chr18 rmsk exon 42995794 42996022 1390 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "5820"; repFamily "ERV1"; repLeft "-1893"; repStart "5588"; chr18 rmsk exon 42996023 42996398 2403 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7325"; chr18 rmsk exon 42996399 42996809 2783 + . gene_id "HERVH_18q12.3d"; transcript_id "HERVH_18q12.3d"; locus "HERVH_18q12.3d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1130"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_18q12.3b ### chr18 rmsk gene 43162440 43171130 . + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0349"; model_cov "8411"; model_pct "100.0"; chr18 rmsk exon 43162440 43162763 1964 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0349"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 43162764 43164121 21523 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0349"; repClass "LTR"; repEnd "2127"; repFamily "ERV1"; repLeft "-3090"; repStart "1"; chr18 rmsk exon 43164476 43167501 21523 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0349"; repClass "LTR"; repEnd "5209"; repFamily "ERV1"; repLeft "-8"; repStart "2128"; chr18 rmsk exon 43167480 43167511 14253 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0349"; repClass "LTR"; repEnd "1970"; repFamily "ERV1"; repLeft "-3247"; repStart "1940"; chr18 rmsk exon 43167769 43169848 14253 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0349"; repClass "LTR"; repEnd "4045"; repFamily "ERV1"; repLeft "-1172"; repStart "1971"; chr18 rmsk exon 43169832 43170870 4164 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0349"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-7"; repStart "4110"; chr18 rmsk exon 43170878 43171130 965 + . gene_id "MER61_18q12.3b"; transcript_id "MER61_18q12.3b"; locus "MER61_18q12.3b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0349"; repClass "LTR"; repEnd "305"; repFamily "ERV1"; repLeft "-36"; repStart "1"; ### HERV4_18q12.3 ### chr18 rmsk gene 43353542 43361433 . + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0126"; model_cov "4970"; model_pct "76.0"; chr18 rmsk exon 43353542 43353650 346 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "105"; repFamily "ERV1"; repLeft "-6434"; repStart "-8"; chr18 rmsk exon 43353672 43353831 480 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "335"; repFamily "ERV1"; repLeft "-6204"; repStart "184"; chr18 rmsk exon 43354250 43354501 457 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "1520"; repFamily "ERV1"; repLeft "-5019"; repStart "1272"; chr18 rmsk exon 43354783 43355499 957 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "2580"; repFamily "ERV1"; repLeft "-3959"; repStart "1849"; chr18 rmsk exon 43356226 43359240 2335 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "6055"; repFamily "ERV1"; repLeft "-484"; repStart "3149"; chr18 rmsk exon 43360863 43361433 1030 + . gene_id "HERV4_18q12.3"; transcript_id "HERV4_18q12.3"; locus "HERV4_18q12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0126"; repClass "LTR"; repEnd "6521"; repFamily "ERV1"; repLeft "-18"; repStart "5700"; ### HERVL_18q12.3a ### chr18 rmsk gene 43397707 43404584 . - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1181"; model_cov "5653"; model_pct "100.0"; chr18 rmsk exon 43397707 43397761 401 - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1181"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr18 rmsk exon 43398017 43398446 2891 - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1181"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr18 rmsk exon 43398447 43403994 26833 - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1181"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 43403995 43404042 331 - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1181"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chr18 rmsk exon 43404195 43404584 3042 - . gene_id "HERVL_18q12.3a"; transcript_id "HERVL_18q12.3a"; locus "HERVL_18q12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1181"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### HERVL18_18q12.3a ### chr18 rmsk gene 43481909 43483268 . + . gene_id "HERVL18_18q12.3a"; transcript_id "HERVL18_18q12.3a"; locus "HERVL18_18q12.3a"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0137"; model_cov "1091"; model_pct "18.0"; chr18 rmsk exon 43481909 43482237 1853 + . gene_id "HERVL18_18q12.3a"; transcript_id "HERVL18_18q12.3a"; locus "HERVL18_18q12.3a"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0137"; repClass "LTR"; repEnd "339"; repFamily "ERVL"; repLeft "-6"; repStart "1"; chr18 rmsk exon 43482241 43482889 2586 + . gene_id "HERVL18_18q12.3a"; transcript_id "HERVL18_18q12.3a"; locus "HERVL18_18q12.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0137"; repClass "LTR"; repEnd "715"; repFamily "ERVL"; repLeft "-5332"; repStart "4"; chr18 rmsk exon 43482890 43483268 2496 + . gene_id "HERVL18_18q12.3a"; transcript_id "HERVL18_18q12.3a"; locus "HERVL18_18q12.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0137"; repClass "LTR"; repEnd "5674"; repFamily "ERVL"; repLeft "-373"; repStart "5294"; ### HERVL18_18q12.3b ### chr18 rmsk gene 43484815 43487154 . + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0138"; model_cov "1731"; model_pct "28.6"; chr18 rmsk exon 43484815 43484976 979 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "176"; repFamily "ERVL"; repLeft "-438"; repStart "14"; chr18 rmsk exon 43485014 43485061 303 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "607"; repFamily "ERVL"; repLeft "-7"; repStart "560"; chr18 rmsk exon 43485064 43485344 1708 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-5766"; repStart "2"; chr18 rmsk exon 43485352 43485679 1760 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "-5086"; repStart "633"; chr18 rmsk exon 43485667 43486010 1646 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1383"; chr18 rmsk exon 43486010 43486269 1275 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr18 rmsk exon 43486269 43486632 2293 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "-2963"; repStart "2720"; chr18 rmsk exon 43486634 43487154 1287 + . gene_id "HERVL18_18q12.3b"; transcript_id "HERVL18_18q12.3b"; locus "HERVL18_18q12.3b"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0138"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "36"; ### HERVL_18q12.3b ### chr18 rmsk gene 43494230 43500569 . + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1182"; model_cov "5649"; model_pct "99.9"; chr18 rmsk exon 43494230 43494365 761 + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1182"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "-48"; repStart "256"; chr18 rmsk exon 43494453 43500000 41716 + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1182"; repClass "LTR"; repEnd "5572"; repFamily "ERVL"; repLeft "-82"; repStart "4"; chr18 rmsk exon 43500001 43500082 636 + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1182"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5573"; chr18 rmsk exon 43500083 43500466 2995 + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1182"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr18 rmsk exon 43500520 43500569 2995 + . gene_id "HERVL_18q12.3b"; transcript_id "HERVL_18q12.3b"; locus "HERVL_18q12.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1182"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "390"; ### ERVLE_18q12.3d ### chr18 rmsk gene 43672036 43672912 . - . gene_id "ERVLE_18q12.3d"; transcript_id "ERVLE_18q12.3d"; locus "ERVLE_18q12.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3352"; model_cov "652"; model_pct "11.5"; chr18 rmsk exon 43672036 43672222 397 - . gene_id "ERVLE_18q12.3d"; transcript_id "ERVLE_18q12.3d"; locus "ERVLE_18q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3352"; repClass "LTR"; repEnd "5069"; repFamily "ERVL"; repLeft "4883"; repStart "-598"; chr18 rmsk exon 43672323 43672658 392 - . gene_id "ERVLE_18q12.3d"; transcript_id "ERVLE_18q12.3d"; locus "ERVLE_18q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3352"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "2088"; repStart "-3216"; chr18 rmsk exon 43672809 43672912 254 - . gene_id "ERVLE_18q12.3d"; transcript_id "ERVLE_18q12.3d"; locus "ERVLE_18q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3352"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "1664"; repStart "-3900"; ### ERVL_18q12.3a ### chr18 rmsk gene 44053712 44055809 . + . gene_id "ERVL_18q12.3a"; transcript_id "ERVL_18q12.3a"; locus "ERVL_18q12.3a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0425"; model_cov "1790"; model_pct "31.1"; chr18 rmsk exon 44053712 44054184 461 + . gene_id "ERVL_18q12.3a"; transcript_id "ERVL_18q12.3a"; locus "ERVL_18q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0425"; repClass "LTR"; repEnd "1435"; repFamily "ERVL"; repLeft "-4322"; repStart "946"; chr18 rmsk exon 44054262 44054332 347 + . gene_id "ERVL_18q12.3a"; transcript_id "ERVL_18q12.3a"; locus "ERVL_18q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0425"; repClass "LTR"; repEnd "1659"; repFamily "ERVL"; repLeft "-4098"; repStart "1589"; chr18 rmsk exon 44054539 44055350 1436 + . gene_id "ERVL_18q12.3a"; transcript_id "ERVL_18q12.3a"; locus "ERVL_18q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0425"; repClass "LTR"; repEnd "2811"; repFamily "ERVL"; repLeft "-2946"; repStart "1929"; chr18 rmsk exon 44055427 44055809 324 + . gene_id "ERVL_18q12.3a"; transcript_id "ERVL_18q12.3a"; locus "ERVL_18q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0425"; repClass "LTR"; repEnd "3322"; repFamily "ERVL"; repLeft "-2435"; repStart "2973"; ### ERVL_18q12.3b ### chr18 rmsk gene 44058512 44060087 . + . gene_id "ERVL_18q12.3b"; transcript_id "ERVL_18q12.3b"; locus "ERVL_18q12.3b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0426"; model_cov "891"; model_pct "15.5"; chr18 rmsk exon 44058512 44058679 508 + . gene_id "ERVL_18q12.3b"; transcript_id "ERVL_18q12.3b"; locus "ERVL_18q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0426"; repClass "LTR"; repEnd "3795"; repFamily "ERVL"; repLeft "-1962"; repStart "3628"; chr18 rmsk exon 44059082 44059238 922 + . gene_id "ERVL_18q12.3b"; transcript_id "ERVL_18q12.3b"; locus "ERVL_18q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0426"; repClass "LTR"; repEnd "4468"; repFamily "ERVL"; repLeft "-1289"; repStart "4303"; chr18 rmsk exon 44059551 44060087 922 + . gene_id "ERVL_18q12.3b"; transcript_id "ERVL_18q12.3b"; locus "ERVL_18q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0426"; repClass "LTR"; repEnd "5071"; repFamily "ERVL"; repLeft "-686"; repStart "4512"; ### ERVLE_18q12.3e ### chr18 rmsk gene 44208290 44209922 . + . gene_id "ERVLE_18q12.3e"; transcript_id "ERVLE_18q12.3e"; locus "ERVLE_18q12.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3356"; model_cov "1687"; model_pct "29.8"; chr18 rmsk exon 44208290 44209922 4829 + . gene_id "ERVLE_18q12.3e"; transcript_id "ERVLE_18q12.3e"; locus "ERVLE_18q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3356"; repClass "LTR"; repEnd "1863"; repFamily "ERVL"; repLeft "-3804"; repStart "176"; ### ERVLB4_18q12.3b ### chr18 rmsk gene 44209923 44214001 . + . gene_id "ERVLB4_18q12.3b"; transcript_id "ERVLB4_18q12.3b"; locus "ERVLB4_18q12.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1629"; model_cov "1494"; model_pct "26.1"; chr18 rmsk exon 44209923 44210850 4275 + . gene_id "ERVLB4_18q12.3b"; transcript_id "ERVLB4_18q12.3b"; locus "ERVLB4_18q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1629"; repClass "LTR"; repEnd "5122"; repFamily "ERVL"; repLeft "-592"; repStart "4153"; chr18 rmsk exon 44213115 44213588 1613 + . gene_id "ERVLB4_18q12.3b"; transcript_id "ERVLB4_18q12.3b"; locus "ERVLB4_18q12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1629"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-61"; repStart "5128"; chr18 rmsk exon 44213619 44214001 795 + . gene_id "ERVLB4_18q12.3b"; transcript_id "ERVLB4_18q12.3b"; locus "ERVLB4_18q12.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1629"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_18q12.3f ### chr18 rmsk gene 44630297 44631176 . - . gene_id "ERVLE_18q12.3f"; transcript_id "ERVLE_18q12.3f"; locus "ERVLE_18q12.3f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3359"; model_cov "724"; model_pct "12.8"; chr18 rmsk exon 44630297 44630411 303 - . gene_id "ERVLE_18q12.3f"; transcript_id "ERVLE_18q12.3f"; locus "ERVLE_18q12.3f"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3359"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "46"; repStart "-460"; chr18 rmsk exon 44630479 44630969 1120 - . gene_id "ERVLE_18q12.3f"; transcript_id "ERVLE_18q12.3f"; locus "ERVLE_18q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3359"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "5144"; repStart "-2"; chr18 rmsk exon 44630984 44631176 531 - . gene_id "ERVLE_18q12.3f"; transcript_id "ERVLE_18q12.3f"; locus "ERVLE_18q12.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3359"; repClass "LTR"; repEnd "4447"; repFamily "ERVL"; repLeft "4244"; repStart "-1220"; ### ERVLE_18q12.3g ### chr18 rmsk gene 44631724 44635998 . - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3360"; model_cov "3055"; model_pct "53.9"; chr18 rmsk exon 44631724 44631924 299 - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3360"; repClass "LTR"; repEnd "4484"; repFamily "ERVL"; repLeft "4275"; repStart "-1183"; chr18 rmsk exon 44631945 44632094 350 - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3360"; repClass "LTR"; repEnd "4018"; repFamily "ERVL"; repLeft "3869"; repStart "-1649"; chr18 rmsk exon 44632900 44633437 3599 - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3360"; repClass "LTR"; repEnd "3461"; repFamily "ERVL"; repLeft "2898"; repStart "-2206"; chr18 rmsk exon 44633810 44635050 3599 - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3360"; repClass "LTR"; repEnd "2897"; repFamily "ERVL"; repLeft "1647"; repStart "-2770"; chr18 rmsk exon 44635115 44635998 1686 - . gene_id "ERVLE_18q12.3g"; transcript_id "ERVLE_18q12.3g"; locus "ERVLE_18q12.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3360"; repClass "LTR"; repEnd "894"; repFamily "ERVL"; repLeft "10"; repStart "-4773"; ### ERV316A3_18q21.1a ### chr18 rmsk gene 45977352 45982497 . + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2567"; model_cov "1845"; model_pct "35.3"; chr18 rmsk exon 45977352 45977796 2022 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "3695"; repFamily "ERVL"; repLeft "-1531"; repStart "3252"; chr18 rmsk exon 45978097 45978644 2022 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-953"; repStart "3696"; chr18 rmsk exon 45979964 45980213 1434 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "4507"; repFamily "ERVL"; repLeft "-719"; repStart "4288"; chr18 rmsk exon 45980807 45981308 1434 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "5033"; repFamily "ERVL"; repLeft "-193"; repStart "4508"; chr18 rmsk exon 45982046 45982129 1434 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "5115"; repFamily "ERVL"; repLeft "-111"; repStart "5034"; chr18 rmsk exon 45982238 45982497 1699 + . gene_id "ERV316A3_18q21.1a"; transcript_id "ERV316A3_18q21.1a"; locus "ERV316A3_18q21.1a"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2567"; repClass "LTR"; repEnd "264"; repFamily "ERVL"; repLeft "-225"; repStart "6"; ### ERV316A3_18q21.1b ### chr18 rmsk gene 46275058 46278556 . + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2568"; model_cov "1864"; model_pct "35.7"; chr18 rmsk exon 46275058 46275081 1176 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "2765"; repFamily "ERVL"; repLeft "-2461"; repStart "2747"; chr18 rmsk exon 46275422 46276210 1176 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "3593"; repFamily "ERVL"; repLeft "-1633"; repStart "2766"; chr18 rmsk exon 46276715 46277143 859 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "3834"; repFamily "ERVL"; repLeft "-1392"; repStart "3179"; chr18 rmsk exon 46277438 46277607 332 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "4301"; repFamily "ERVL"; repLeft "-925"; repStart "4101"; chr18 rmsk exon 46277696 46277856 294 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "5062"; repFamily "ERVL"; repLeft "-164"; repStart "4898"; chr18 rmsk exon 46278042 46278556 2270 + . gene_id "ERV316A3_18q21.1b"; transcript_id "ERV316A3_18q21.1b"; locus "ERV316A3_18q21.1b"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2568"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "0"; repStart "19"; ### HERVL_18q21.1 ### chr18 rmsk gene 46777528 46782756 . + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1183"; model_cov "4293"; model_pct "75.9"; chr18 rmsk exon 46777528 46777984 3087 + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1183"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 46777985 46778533 6648 + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1183"; repClass "LTR"; repEnd "539"; repFamily "ERVL"; repLeft "-5115"; repStart "1"; chr18 rmsk exon 46778836 46779143 6648 + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1183"; repClass "LTR"; repEnd "837"; repFamily "ERVL"; repLeft "-4817"; repStart "540"; chr18 rmsk exon 46779152 46782323 19963 + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1183"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2196"; chr18 rmsk exon 46782324 46782756 2973 + . gene_id "HERVL_18q21.1"; transcript_id "HERVL_18q21.1"; locus "HERVL_18q21.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1183"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVI_18q21.1 ### chr18 rmsk gene 46868193 46877872 . + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0035"; model_cov "7764"; model_pct "99.7"; chr18 rmsk exon 46868193 46868774 3554 + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0035"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 46868777 46870333 30365 + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0035"; repClass "LTR"; repEnd "1462"; repFamily "ERV1"; repLeft "-6323"; repStart "3"; chr18 rmsk exon 46870645 46876697 30365 + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0035"; repClass "LTR"; repEnd "7494"; repFamily "ERV1"; repLeft "-291"; repStart "1463"; chr18 rmsk exon 46877000 46877281 30365 + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0035"; repClass "LTR"; repEnd "7769"; repFamily "ERV1"; repLeft "-16"; repStart "7495"; chr18 rmsk exon 46877298 46877872 3489 + . gene_id "HERVI_18q21.1"; transcript_id "HERVI_18q21.1"; locus "HERVI_18q21.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0035"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_18q21.1a ### chr18 rmsk gene 47432549 47434731 . + . gene_id "ERVLE_18q21.1a"; transcript_id "ERVLE_18q21.1a"; locus "ERVLE_18q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3361"; model_cov "1717"; model_pct "30.3"; chr18 rmsk exon 47432549 47433035 1094 + . gene_id "ERVLE_18q21.1a"; transcript_id "ERVLE_18q21.1a"; locus "ERVLE_18q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3361"; repClass "LTR"; repEnd "1460"; repFamily "ERVL"; repLeft "-4207"; repStart "957"; chr18 rmsk exon 47433511 47434018 425 + . gene_id "ERVLE_18q21.1a"; transcript_id "ERVLE_18q21.1a"; locus "ERVLE_18q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3361"; repClass "LTR"; repEnd "1994"; repFamily "ERVL"; repLeft "-3673"; repStart "1373"; chr18 rmsk exon 47434178 47434731 1650 + . gene_id "ERVLE_18q21.1a"; transcript_id "ERVLE_18q21.1a"; locus "ERVLE_18q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3361"; repClass "LTR"; repEnd "2780"; repFamily "ERVL"; repLeft "-2887"; repStart "2187"; ### MER101_18q21.1a ### chr18 rmsk gene 47816554 47819208 . + . gene_id "MER101_18q21.1a"; transcript_id "MER101_18q21.1a"; locus "MER101_18q21.1a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0374"; model_cov "1972"; model_pct "29.7"; chr18 rmsk exon 47816554 47816764 1350 + . gene_id "MER101_18q21.1a"; transcript_id "MER101_18q21.1a"; locus "MER101_18q21.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0374"; repClass "LTR"; repEnd "363"; repFamily "ERV1"; repLeft "-82"; repStart "128"; chr18 rmsk exon 47817061 47817134 1350 + . gene_id "MER101_18q21.1a"; transcript_id "MER101_18q21.1a"; locus "MER101_18q21.1a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0374"; repClass "LTR"; repEnd "432"; repFamily "ERV1"; repLeft "-13"; repStart "364"; chr18 rmsk exon 47817183 47817474 5830 + . gene_id "MER101_18q21.1a"; transcript_id "MER101_18q21.1a"; locus "MER101_18q21.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0374"; repClass "LTR"; repEnd "2105"; repFamily "ERV1"; repLeft "-4534"; repStart "1812"; chr18 rmsk exon 47817600 47819208 5830 + . gene_id "MER101_18q21.1a"; transcript_id "MER101_18q21.1a"; locus "MER101_18q21.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0374"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "-2854"; repStart "2106"; ### LTR57_18q21.1 ### chr18 rmsk gene 47818630 47820124 . + . gene_id "LTR57_18q21.1"; transcript_id "LTR57_18q21.1"; locus "LTR57_18q21.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0166"; model_cov "1022"; model_pct "19.1"; chr18 rmsk exon 47818630 47819526 2394 + . gene_id "LTR57_18q21.1"; transcript_id "LTR57_18q21.1"; locus "LTR57_18q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0166"; repClass "LTR"; repEnd "1468"; repFamily "ERVL"; repLeft "-3875"; repStart "559"; chr18 rmsk exon 47819819 47819852 2394 + . gene_id "LTR57_18q21.1"; transcript_id "LTR57_18q21.1"; locus "LTR57_18q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0166"; repClass "LTR"; repEnd "1505"; repFamily "ERVL"; repLeft "-3838"; repStart "1469"; chr18 rmsk exon 47820055 47820124 306 + . gene_id "LTR57_18q21.1"; transcript_id "LTR57_18q21.1"; locus "LTR57_18q21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0166"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-3763"; repStart "1503"; ### MER101_18q21.1b ### chr18 rmsk gene 47820099 47824600 . + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0375"; model_cov "3560"; model_pct "53.6"; chr18 rmsk exon 47820099 47820774 1539 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4145"; repStart "1552"; chr18 rmsk exon 47820942 47821031 524 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "2650"; repFamily "ERV1"; repLeft "-3989"; repStart "2557"; chr18 rmsk exon 47821259 47822682 6431 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "4168"; repFamily "ERV1"; repLeft "-2471"; repStart "2761"; chr18 rmsk exon 47822990 47823279 6431 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "4453"; repFamily "ERV1"; repLeft "-2186"; repStart "4169"; chr18 rmsk exon 47823321 47823713 1383 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "5751"; repFamily "ERV1"; repLeft "-888"; repStart "5385"; chr18 rmsk exon 47823725 47824193 1982 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0375"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6171"; chr18 rmsk exon 47824195 47824600 2092 + . gene_id "MER101_18q21.1b"; transcript_id "MER101_18q21.1b"; locus "MER101_18q21.1b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0375"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_18q21.1b ### chr18 rmsk gene 48459770 48463770 . + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3362"; model_cov "3102"; model_pct "54.7"; chr18 rmsk exon 48459770 48460000 1013 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "252"; repFamily "ERVL"; repLeft "-5415"; repStart "18"; chr18 rmsk exon 48460344 48460915 1013 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "835"; repFamily "ERVL"; repLeft "-4832"; repStart "253"; chr18 rmsk exon 48461165 48461363 366 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "1739"; repFamily "ERVL"; repLeft "-3928"; repStart "1524"; chr18 rmsk exon 48461343 48461652 270 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "1741"; repFamily "ERVL"; repLeft "-3926"; repStart "1421"; chr18 rmsk exon 48461659 48462016 894 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "2392"; repFamily "ERVL"; repLeft "-3275"; repStart "1921"; chr18 rmsk exon 48462512 48463045 1293 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "3539"; repFamily "ERVL"; repLeft "-2128"; repStart "2961"; chr18 rmsk exon 48463078 48463770 1482 + . gene_id "ERVLE_18q21.1b"; transcript_id "ERVLE_18q21.1b"; locus "ERVLE_18q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3362"; repClass "LTR"; repEnd "4324"; repFamily "ERVL"; repLeft "-1343"; repStart "3622"; ### ERVLE_18q21.1c ### chr18 rmsk gene 48471097 48472369 . - . gene_id "ERVLE_18q21.1c"; transcript_id "ERVLE_18q21.1c"; locus "ERVLE_18q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3363"; model_cov "1269"; model_pct "22.4"; chr18 rmsk exon 48471097 48472369 4720 - . gene_id "ERVLE_18q21.1c"; transcript_id "ERVLE_18q21.1c"; locus "ERVLE_18q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3363"; repClass "LTR"; repEnd "5030"; repFamily "ERVL"; repLeft "3761"; repStart "-637"; ### HUERSP3B_18q21.1 ### chr18 rmsk gene 49447280 49454617 . + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0123"; model_cov "4729"; model_pct "63.8"; chr18 rmsk exon 49447280 49447437 598 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "453"; chr18 rmsk exon 49447449 49447549 647 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "-1388"; repFamily "ERV1"; repLeft "-8806"; repStart "-1490"; chr18 rmsk exon 49447550 49449852 6117 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "2507"; repFamily "ERV1"; repLeft "-4911"; repStart "273"; chr18 rmsk exon 49449853 49451949 14881 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "6544"; repFamily "ERV1"; repLeft "-874"; repStart "4389"; chr18 rmsk exon 49451948 49452050 740 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "5315"; repFamily "ERV1"; repLeft "-2103"; repStart "5213"; chr18 rmsk exon 49453667 49453799 826 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "-473"; repStart "6809"; chr18 rmsk exon 49454229 49454617 2688 + . gene_id "HUERSP3B_18q21.1"; transcript_id "HUERSP3B_18q21.1"; locus "HUERSP3B_18q21.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0123"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-188"; repStart "1"; ### MER4_18q21.1 ### chr18 rmsk gene 49525405 49536591 . + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0745"; model_cov "6681"; model_pct "100.0"; chr18 rmsk exon 49525405 49525811 995 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0745"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "-11"; repStart "65"; chr18 rmsk exon 49526206 49526354 601 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "-6004"; repStart "446"; chr18 rmsk exon 49528045 49528449 2797 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0745"; repClass "LTR"; repEnd "433"; repFamily "ERV1"; repLeft "-32"; repStart "1"; chr18 rmsk exon 49528456 49528827 3159 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "1525"; repFamily "ERV1"; repLeft "-5073"; repStart "1140"; chr18 rmsk exon 49528828 49529011 3111 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0745"; repClass "LTR"; repEnd "182"; repFamily "ERV1"; repLeft "-428"; repStart "1"; chr18 rmsk exon 49529301 49529739 3111 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0745"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "-2"; repStart "183"; chr18 rmsk exon 49529740 49530196 3159 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "1966"; repFamily "ERV1"; repLeft "-4632"; repStart "1526"; chr18 rmsk exon 49531566 49531638 1748 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "2061"; repFamily "ERV1"; repLeft "-4537"; repStart "1979"; chr18 rmsk exon 49532136 49532635 1748 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "2455"; repFamily "ERV1"; repLeft "-4143"; repStart "1503"; chr18 rmsk exon 49532641 49533407 14347 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "4397"; repFamily "ERV1"; repLeft "-2201"; repStart "3593"; chr18 rmsk exon 49533698 49533745 14347 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "4410"; repFamily "ERV1"; repLeft "-2188"; repStart "4398"; chr18 rmsk exon 49534042 49536213 14347 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0745"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "2739"; chr18 rmsk exon 49536214 49536591 2505 + . gene_id "MER4_18q21.1"; transcript_id "MER4_18q21.1"; locus "MER4_18q21.1"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0745"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-40"; repStart "1"; ### ERVLE_18q21.1d ### chr18 rmsk gene 49538422 49539319 . + . gene_id "ERVLE_18q21.1d"; transcript_id "ERVLE_18q21.1d"; locus "ERVLE_18q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3364"; model_cov "644"; model_pct "11.4"; chr18 rmsk exon 49538422 49538899 1336 + . gene_id "ERVLE_18q21.1d"; transcript_id "ERVLE_18q21.1d"; locus "ERVLE_18q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3364"; repClass "LTR"; repEnd "5271"; repFamily "ERVL"; repLeft "-396"; repStart "4730"; chr18 rmsk exon 49539200 49539319 1336 + . gene_id "ERVLE_18q21.1d"; transcript_id "ERVLE_18q21.1d"; locus "ERVLE_18q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3364"; repClass "LTR"; repEnd "5375"; repFamily "ERVL"; repLeft "-292"; repStart "5272"; ### HERVK11_18q21.1 ### chr18 rmsk gene 50220146 50223833 . - . gene_id "HERVK11_18q21.1"; transcript_id "HERVK11_18q21.1"; locus "HERVK11_18q21.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0092"; model_cov "1977"; model_pct "24.9"; chr18 rmsk exon 50220146 50221230 5319 - . gene_id "HERVK11_18q21.1"; transcript_id "HERVK11_18q21.1"; locus "HERVK11_18q21.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0092"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr18 rmsk exon 50221231 50223222 16259 - . gene_id "HERVK11_18q21.1"; transcript_id "HERVK11_18q21.1"; locus "HERVK11_18q21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0092"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "5976"; repStart "0"; chr18 rmsk exon 50223223 50223833 3891 - . gene_id "HERVK11_18q21.1"; transcript_id "HERVK11_18q21.1"; locus "HERVK11_18q21.1"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0092"; repClass "LTR"; repEnd "712"; repFamily "ERVK"; repLeft "31"; repStart "-554"; ### HERVS71_18q21.1 ### chr18 rmsk gene 50400451 50408730 . + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0043"; model_cov "6475"; model_pct "72.1"; chr18 rmsk exon 50400451 50401006 4484 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 50401009 50404194 14382 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "3400"; repFamily "ERV1"; repLeft "-5578"; repStart "4"; chr18 rmsk exon 50405172 50405278 14382 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "3501"; repFamily "ERV1"; repLeft "-5477"; repStart "3401"; chr18 rmsk exon 50405272 50407886 9966 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "7668"; repFamily "ERV1"; repLeft "-1310"; repStart "4977"; chr18 rmsk exon 50407878 50408166 1794 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8621"; chr18 rmsk exon 50408167 50408730 4556 + . gene_id "HERVS71_18q21.1"; transcript_id "HERVS71_18q21.1"; locus "HERVS71_18q21.1"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0043"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_18q21.1e ### chr18 rmsk gene 50445785 50447474 . - . gene_id "ERVLE_18q21.1e"; transcript_id "ERVLE_18q21.1e"; locus "ERVLE_18q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3366"; model_cov "1067"; model_pct "18.8"; chr18 rmsk exon 50445785 50445992 589 - . gene_id "ERVLE_18q21.1e"; transcript_id "ERVLE_18q21.1e"; locus "ERVLE_18q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3366"; repClass "LTR"; repEnd "2176"; repFamily "ERVL"; repLeft "1967"; repStart "-3491"; chr18 rmsk exon 50446005 50446124 1309 - . gene_id "ERVLE_18q21.1e"; transcript_id "ERVLE_18q21.1e"; locus "ERVLE_18q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3366"; repClass "LTR"; repEnd "1802"; repFamily "ERVL"; repLeft "1675"; repStart "-3865"; chr18 rmsk exon 50446594 50447110 1309 - . gene_id "ERVLE_18q21.1e"; transcript_id "ERVLE_18q21.1e"; locus "ERVLE_18q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3366"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "1146"; repStart "-3993"; chr18 rmsk exon 50447265 50447474 1309 - . gene_id "ERVLE_18q21.1e"; transcript_id "ERVLE_18q21.1e"; locus "ERVLE_18q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3366"; repClass "LTR"; repEnd "1145"; repFamily "ERVL"; repLeft "942"; repStart "-4522"; ### MER41_18q21.1 ### chr18 rmsk gene 50543682 50545122 . + . gene_id "MER41_18q21.1"; transcript_id "MER41_18q21.1"; locus "MER41_18q21.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0502"; model_cov "1646"; model_pct "27.7"; chr18 rmsk exon 50543682 50544577 6542 + . gene_id "MER41_18q21.1"; transcript_id "MER41_18q21.1"; locus "MER41_18q21.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0502"; repClass "LTR"; repEnd "5923"; repFamily "ERV1"; repLeft "-23"; repStart "4277"; chr18 rmsk exon 50544579 50545122 4213 + . gene_id "MER41_18q21.1"; transcript_id "MER41_18q21.1"; locus "MER41_18q21.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0502"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### MER61_18q21.2a ### chr18 rmsk gene 50775309 50779911 . + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0351"; model_cov "3911"; model_pct "75.0"; chr18 rmsk exon 50775309 50775642 1787 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0351"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr18 rmsk exon 50775643 50775999 2106 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0351"; repClass "LTR"; repEnd "353"; repFamily "ERV1"; repLeft "-4864"; repStart "1"; chr18 rmsk exon 50776306 50776457 2106 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0351"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-4717"; repStart "354"; chr18 rmsk exon 50776506 50776600 315 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0351"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "618"; chr18 rmsk exon 50776629 50776673 316 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0351"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-3855"; repStart "1318"; chr18 rmsk exon 50776687 50779911 22208 + . gene_id "MER61_18q21.2a"; transcript_id "MER61_18q21.2a"; locus "MER61_18q21.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0351"; repClass "LTR"; repEnd "4720"; repFamily "ERV1"; repLeft "-497"; repStart "1440"; ### HERVL_18q21.2a ### chr18 rmsk gene 50999947 51008358 . + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1184"; model_cov "4535"; model_pct "80.2"; chr18 rmsk exon 50999947 50999998 275 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "-49"; repFamily "ERVL"; repLeft "-502"; repStart "-100"; chr18 rmsk exon 51000001 51000526 2059 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "55"; chr18 rmsk exon 51000527 51001573 5665 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "1026"; repFamily "ERVL"; repLeft "-4628"; repStart "1"; chr18 rmsk exon 51003702 51004692 8547 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "1996"; repFamily "ERVL"; repLeft "-3658"; repStart "1014"; chr18 rmsk exon 51004994 51005994 8547 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "3068"; repFamily "ERVL"; repLeft "-2586"; repStart "1905"; chr18 rmsk exon 51005995 51006972 8578 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "-360"; repStart "4288"; chr18 rmsk exon 51007430 51007791 8578 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5295"; chr18 rmsk exon 51007792 51008358 2243 + . gene_id "HERVL_18q21.2a"; transcript_id "HERVL_18q21.2a"; locus "HERVL_18q21.2a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1184"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_18q21.2b ### chr18 rmsk gene 51226695 51233755 . - . gene_id "HERVL_18q21.2b"; transcript_id "HERVL_18q21.2b"; locus "HERVL_18q21.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1185"; model_cov "5651"; model_pct "99.9"; chr18 rmsk exon 51226695 51227277 2389 - . gene_id "HERVL_18q21.2b"; transcript_id "HERVL_18q21.2b"; locus "HERVL_18q21.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1185"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 51227278 51229930 36847 - . gene_id "HERVL_18q21.2b"; transcript_id "HERVL_18q21.2b"; locus "HERVL_18q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1185"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2961"; repStart "0"; chr18 rmsk exon 51230286 51233181 36847 - . gene_id "HERVL_18q21.2b"; transcript_id "HERVL_18q21.2b"; locus "HERVL_18q21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1185"; repClass "LTR"; repEnd "2960"; repFamily "ERVL"; repLeft "2"; repStart "-2694"; chr18 rmsk exon 51233188 51233755 2139 - . gene_id "HERVL_18q21.2b"; transcript_id "HERVL_18q21.2b"; locus "HERVL_18q21.2b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1185"; repClass "LTR"; repEnd "532"; repFamily "ERVL"; repLeft "1"; repStart "-22"; ### ERVLE_18q21.2a ### chr18 rmsk gene 51507511 51508034 . - . gene_id "ERVLE_18q21.2a"; transcript_id "ERVLE_18q21.2a"; locus "ERVLE_18q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3367"; model_cov "588"; model_pct "10.4"; chr18 rmsk exon 51507511 51508034 1488 - . gene_id "ERVLE_18q21.2a"; transcript_id "ERVLE_18q21.2a"; locus "ERVLE_18q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3367"; repClass "LTR"; repEnd "4728"; repFamily "ERVL"; repLeft "4140"; repStart "-939"; ### HERVH_18q21.2 ### chr18 rmsk gene 51570063 51574789 . - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1131"; model_cov "4264"; model_pct "55.3"; chr18 rmsk exon 51570063 51570472 3095 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr18 rmsk exon 51570523 51570849 2115 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "7668"; repFamily "ERV1"; repLeft "7324"; repStart "-45"; chr18 rmsk exon 51570850 51571086 1433 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr18 rmsk exon 51571067 51571728 4550 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr18 rmsk exon 51571731 51572232 3441 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr18 rmsk exon 51572223 51572369 985 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr18 rmsk exon 51572356 51574789 16181 - . gene_id "HERVH_18q21.2"; transcript_id "HERVH_18q21.2"; locus "HERVH_18q21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1131"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "615"; repStart "-4721"; ### ERVLE_18q21.2b ### chr18 rmsk gene 51618086 51619268 . + . gene_id "ERVLE_18q21.2b"; transcript_id "ERVLE_18q21.2b"; locus "ERVLE_18q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3368"; model_cov "737"; model_pct "13.0"; chr18 rmsk exon 51618086 51618409 2444 + . gene_id "ERVLE_18q21.2b"; transcript_id "ERVLE_18q21.2b"; locus "ERVLE_18q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3368"; repClass "LTR"; repEnd "1510"; repFamily "ERVL"; repLeft "-4157"; repStart "1153"; chr18 rmsk exon 51618897 51619268 2444 + . gene_id "ERVLE_18q21.2b"; transcript_id "ERVLE_18q21.2b"; locus "ERVLE_18q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3368"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "-3776"; repStart "1511"; ### MER4_18q21.2 ### chr18 rmsk gene 51629573 51636773 . + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0746"; model_cov "6045"; model_pct "91.6"; chr18 rmsk exon 51629573 51630018 3296 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0746"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr18 rmsk exon 51630021 51632423 13044 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0746"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "1"; chr18 rmsk exon 51632557 51633272 3172 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0746"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2890"; chr18 rmsk exon 51633271 51633396 17161 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0746"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "-2635"; repStart "3836"; chr18 rmsk exon 51633703 51636317 17161 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0746"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3964"; chr18 rmsk exon 51636319 51636773 3477 + . gene_id "MER4_18q21.2"; transcript_id "MER4_18q21.2"; locus "MER4_18q21.2"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0746"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HERVH48_18q21.2a ### chr18 rmsk gene 51696613 51699891 . + . gene_id "HERVH48_18q21.2a"; transcript_id "HERVH48_18q21.2a"; locus "HERVH48_18q21.2a"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0048"; model_cov "2918"; model_pct "43.9"; chr18 rmsk exon 51696613 51696998 2839 + . gene_id "HERVH48_18q21.2a"; transcript_id "HERVH48_18q21.2a"; locus "HERVH48_18q21.2a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0048"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr18 rmsk exon 51697000 51698173 7274 + . gene_id "HERVH48_18q21.2a"; transcript_id "HERVH48_18q21.2a"; locus "HERVH48_18q21.2a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0048"; repClass "LTR"; repEnd "1192"; repFamily "ERV1"; repLeft "-5462"; repStart "1"; chr18 rmsk exon 51698181 51699891 10987 + . gene_id "HERVH48_18q21.2a"; transcript_id "HERVH48_18q21.2a"; locus "HERVH48_18q21.2a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0048"; repClass "LTR"; repEnd "3536"; repFamily "ERV1"; repLeft "-3118"; repStart "1809"; ### HERVH48_18q21.2b ### chr18 rmsk gene 51706732 51710183 . + . gene_id "HERVH48_18q21.2b"; transcript_id "HERVH48_18q21.2b"; locus "HERVH48_18q21.2b"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0049"; model_cov "3135"; model_pct "47.1"; chr18 rmsk exon 51706732 51709796 20550 + . gene_id "HERVH48_18q21.2b"; transcript_id "HERVH48_18q21.2b"; locus "HERVH48_18q21.2b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0049"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "3519"; chr18 rmsk exon 51709797 51710183 2791 + . gene_id "HERVH48_18q21.2b"; transcript_id "HERVH48_18q21.2b"; locus "HERVH48_18q21.2b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0049"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_18q21.2c ### chr18 rmsk gene 51880760 51882083 . - . gene_id "ERVLE_18q21.2c"; transcript_id "ERVLE_18q21.2c"; locus "ERVLE_18q21.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3369"; model_cov "1052"; model_pct "18.6"; chr18 rmsk exon 51880760 51880959 363 - . gene_id "ERVLE_18q21.2c"; transcript_id "ERVLE_18q21.2c"; locus "ERVLE_18q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3369"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "3072"; repStart "-2385"; chr18 rmsk exon 51881231 51881641 640 - . gene_id "ERVLE_18q21.2c"; transcript_id "ERVLE_18q21.2c"; locus "ERVLE_18q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3369"; repClass "LTR"; repEnd "2995"; repFamily "ERVL"; repLeft "2546"; repStart "-2672"; chr18 rmsk exon 51881709 51882083 495 - . gene_id "ERVLE_18q21.2c"; transcript_id "ERVLE_18q21.2c"; locus "ERVLE_18q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3369"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "1068"; repStart "-4206"; ### ERVL_18q21.2 ### chr18 rmsk gene 51908684 51909867 . + . gene_id "ERVL_18q21.2"; transcript_id "ERVL_18q21.2"; locus "ERVL_18q21.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0427"; model_cov "687"; model_pct "11.9"; chr18 rmsk exon 51908684 51909114 2310 + . gene_id "ERVL_18q21.2"; transcript_id "ERVL_18q21.2"; locus "ERVL_18q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0427"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "-515"; repStart "4790"; chr18 rmsk exon 51909119 51909351 1226 + . gene_id "ERVL_18q21.2"; transcript_id "ERVL_18q21.2"; locus "ERVL_18q21.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0427"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5522"; chr18 rmsk exon 51909354 51909867 2934 + . gene_id "ERVL_18q21.2"; transcript_id "ERVL_18q21.2"; locus "ERVL_18q21.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0427"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### PABLB_18q21.2a ### chr18 rmsk gene 51953473 51954262 . + . gene_id "PABLB_18q21.2a"; transcript_id "PABLB_18q21.2a"; locus "PABLB_18q21.2a"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0095"; model_cov "802"; model_pct "11.3"; chr18 rmsk exon 51953473 51954262 1724 + . gene_id "PABLB_18q21.2a"; transcript_id "PABLB_18q21.2a"; locus "PABLB_18q21.2a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0095"; repClass "LTR"; repEnd "6139"; repFamily "ERV1"; repLeft "-983"; repStart "5337"; ### PABLB_18q21.2b ### chr18 rmsk gene 51955445 51960265 . + . gene_id "PABLB_18q21.2b"; transcript_id "PABLB_18q21.2b"; locus "PABLB_18q21.2b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0096"; model_cov "4201"; model_pct "59.0"; chr18 rmsk exon 51955445 51955865 3492 + . gene_id "PABLB_18q21.2b"; transcript_id "PABLB_18q21.2b"; locus "PABLB_18q21.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0096"; repClass "LTR"; repEnd "1378"; repFamily "ERV1"; repLeft "-5744"; repStart "955"; chr18 rmsk exon 51956162 51957443 3492 + . gene_id "PABLB_18q21.2b"; transcript_id "PABLB_18q21.2b"; locus "PABLB_18q21.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0096"; repClass "LTR"; repEnd "2631"; repFamily "ERV1"; repLeft "-4491"; repStart "1379"; chr18 rmsk exon 51957735 51960265 3492 + . gene_id "PABLB_18q21.2b"; transcript_id "PABLB_18q21.2b"; locus "PABLB_18q21.2b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0096"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "-1964"; repStart "2632"; ### ERVLE_18q21.2d ### chr18 rmsk gene 52083236 52091303 . + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3370"; model_cov "5322"; model_pct "93.9"; chr18 rmsk exon 52083236 52083453 575 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "244"; repFamily "ERVL"; repLeft "-419"; repStart "2"; chr18 rmsk exon 52083462 52084027 6726 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "762"; repFamily "ERVL"; repLeft "-4905"; repStart "185"; chr18 rmsk exon 52084626 52085546 6726 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "1685"; repFamily "ERVL"; repLeft "-3982"; repStart "763"; chr18 rmsk exon 52085853 52086303 6726 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "2145"; repFamily "ERVL"; repLeft "-3522"; repStart "1686"; chr18 rmsk exon 52086893 52087420 2256 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "2674"; repFamily "ERVL"; repLeft "-2993"; repStart "2142"; chr18 rmsk exon 52087460 52087502 3272 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "-2880"; repStart "2742"; chr18 rmsk exon 52088005 52090351 6544 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "5318"; repFamily "ERVL"; repLeft "-349"; repStart "2788"; chr18 rmsk exon 52090393 52090645 822 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5409"; chr18 rmsk exon 52090653 52091303 1057 + . gene_id "ERVLE_18q21.2d"; transcript_id "ERVLE_18q21.2d"; locus "ERVLE_18q21.2d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3370"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "3"; ### ERVLE_18q21.2e ### chr18 rmsk gene 52181038 52183701 . + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3371"; model_cov "1446"; model_pct "25.5"; chr18 rmsk exon 52181038 52181511 698 + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3371"; repClass "LTR"; repEnd "600"; repFamily "ERVL"; repLeft "-63"; repStart "102"; chr18 rmsk exon 52181593 52181666 698 + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3371"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "601"; chr18 rmsk exon 52181667 52181841 4619 + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3371"; repClass "LTR"; repEnd "3986"; repFamily "ERVL"; repLeft "-1681"; repStart "3809"; chr18 rmsk exon 52182144 52182691 4619 + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3371"; repClass "LTR"; repEnd "4535"; repFamily "ERVL"; repLeft "-1132"; repStart "3987"; chr18 rmsk exon 52182999 52183701 4619 + . gene_id "ERVLE_18q21.2e"; transcript_id "ERVLE_18q21.2e"; locus "ERVLE_18q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3371"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "-410"; repStart "4536"; ### HERVL_18q21.2c ### chr18 rmsk gene 52586354 52588422 . - . gene_id "HERVL_18q21.2c"; transcript_id "HERVL_18q21.2c"; locus "HERVL_18q21.2c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1186"; model_cov "2071"; model_pct "36.6"; chr18 rmsk exon 52586354 52588422 16558 - . gene_id "HERVL_18q21.2c"; transcript_id "HERVL_18q21.2c"; locus "HERVL_18q21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1186"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "3014"; repStart "-569"; ### HUERSP2_18q21.2 ### chr18 rmsk gene 52774584 52775967 . - . gene_id "HUERSP2_18q21.2"; transcript_id "HUERSP2_18q21.2"; locus "HUERSP2_18q21.2"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0116"; model_cov "390"; model_pct "12.6"; chr18 rmsk exon 52774584 52774690 750 - . gene_id "HUERSP2_18q21.2"; transcript_id "HUERSP2_18q21.2"; locus "HUERSP2_18q21.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0116"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "731"; repStart "0"; chr18 rmsk exon 52774753 52775002 1039 - . gene_id "HUERSP2_18q21.2"; transcript_id "HUERSP2_18q21.2"; locus "HUERSP2_18q21.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0116"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "204"; repStart "-2616"; chr18 rmsk exon 52775026 52775145 413 - . gene_id "HUERSP2_18q21.2"; transcript_id "HUERSP2_18q21.2"; locus "HUERSP2_18q21.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0116"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "1"; repStart "-2965"; chr18 rmsk exon 52775146 52775967 4694 - . gene_id "HUERSP2_18q21.2"; transcript_id "HUERSP2_18q21.2"; locus "HUERSP2_18q21.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0116"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_18q21.2a ### chr18 rmsk gene 52784756 52789686 . - . gene_id "HUERSP3B_18q21.2a"; transcript_id "HUERSP3B_18q21.2a"; locus "HUERSP3B_18q21.2a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0124"; model_cov "4509"; model_pct "60.8"; chr18 rmsk exon 52784756 52785443 2530 - . gene_id "HUERSP3B_18q21.2a"; transcript_id "HUERSP3B_18q21.2a"; locus "HUERSP3B_18q21.2a"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0124"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "-115"; repStart "-12"; chr18 rmsk exon 52785445 52789686 28122 - . gene_id "HUERSP3B_18q21.2a"; transcript_id "HUERSP3B_18q21.2a"; locus "HUERSP3B_18q21.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0124"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "2902"; repStart "-7"; ### HUERSP3B_18q21.2b ### chr18 rmsk gene 52790112 52793481 . - . gene_id "HUERSP3B_18q21.2b"; transcript_id "HUERSP3B_18q21.2b"; locus "HUERSP3B_18q21.2b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0125"; model_cov "2875"; model_pct "38.8"; chr18 rmsk exon 52790112 52792754 28122 - . gene_id "HUERSP3B_18q21.2b"; transcript_id "HUERSP3B_18q21.2b"; locus "HUERSP3B_18q21.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0125"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "4600"; repStart "-7"; chr18 rmsk exon 52792859 52792933 28122 - . gene_id "HUERSP3B_18q21.2b"; transcript_id "HUERSP3B_18q21.2b"; locus "HUERSP3B_18q21.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0125"; repClass "LTR"; repEnd "89"; repFamily "ERV1"; repLeft "25"; repStart "-7329"; chr18 rmsk exon 52792954 52793481 2859 - . gene_id "HUERSP3B_18q21.2b"; transcript_id "HUERSP3B_18q21.2b"; locus "HUERSP3B_18q21.2b"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0125"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "1"; repStart "-56"; ### ERVLE_18q21.2f ### chr18 rmsk gene 53076202 53077393 . - . gene_id "ERVLE_18q21.2f"; transcript_id "ERVLE_18q21.2f"; locus "ERVLE_18q21.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3372"; model_cov "1223"; model_pct "21.6"; chr18 rmsk exon 53076202 53077393 1865 - . gene_id "ERVLE_18q21.2f"; transcript_id "ERVLE_18q21.2f"; locus "ERVLE_18q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3372"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "3600"; repStart "-844"; ### HERVL18_18q21.2 ### chr18 rmsk gene 53941993 53945012 . - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0139"; model_cov "2509"; model_pct "41.5"; chr18 rmsk exon 53941993 53942040 248 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "308"; repStart "-2"; chr18 rmsk exon 53942041 53942219 668 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "157"; repFamily "ERVL"; repLeft "1"; repStart "-200"; chr18 rmsk exon 53942221 53942319 437 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "5946"; repStart "0"; chr18 rmsk exon 53942320 53942378 295 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "5209"; repStart "-780"; chr18 rmsk exon 53942379 53942473 677 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "4488"; repFamily "ERVL"; repLeft "4394"; repStart "-1559"; chr18 rmsk exon 53942476 53943312 4946 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "2720"; repStart "-2468"; chr18 rmsk exon 53943312 53943570 1150 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "2119"; repStart "-3595"; chr18 rmsk exon 53943570 53944170 2078 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "1149"; repStart "-4237"; chr18 rmsk exon 53944165 53944560 1986 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "498"; repFamily "ERVL"; repLeft "95"; repStart "-5549"; chr18 rmsk exon 53944597 53945012 1929 - . gene_id "HERVL18_18q21.2"; transcript_id "HERVL18_18q21.2"; locus "HERVL18_18q21.2"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0139"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "7"; repStart "0"; ### MER61_18q21.2b ### chr18 rmsk gene 54382339 54387923 . - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0352"; model_cov "4666"; model_pct "89.4"; chr18 rmsk exon 54382339 54382420 526 - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0352"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "1"; repStart "-255"; chr18 rmsk exon 54382423 54386146 23555 - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0352"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "1320"; repStart "-4"; chr18 rmsk exon 54386140 54386595 3370 - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0352"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "231"; repStart "-4440"; chr18 rmsk exon 54387373 54387584 3370 - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0352"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "3"; repStart "-4987"; chr18 rmsk exon 54387587 54387923 2004 - . gene_id "MER61_18q21.2b"; transcript_id "MER61_18q21.2b"; locus "MER61_18q21.2b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0352"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_18q21.2 ### chr18 rmsk gene 54508232 54509807 . + . gene_id "ERV316A3_18q21.2"; transcript_id "ERV316A3_18q21.2"; locus "ERV316A3_18q21.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2570"; model_cov "1435"; model_pct "27.5"; chr18 rmsk exon 54508232 54508734 1353 + . gene_id "ERV316A3_18q21.2"; transcript_id "ERV316A3_18q21.2"; locus "ERV316A3_18q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2570"; repClass "LTR"; repEnd "3994"; repFamily "ERVL"; repLeft "-1232"; repStart "3301"; chr18 rmsk exon 54508960 54509054 256 + . gene_id "ERV316A3_18q21.2"; transcript_id "ERV316A3_18q21.2"; locus "ERV316A3_18q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2570"; repClass "LTR"; repEnd "4372"; repFamily "ERVL"; repLeft "-854"; repStart "4279"; chr18 rmsk exon 54509160 54509807 985 + . gene_id "ERV316A3_18q21.2"; transcript_id "ERV316A3_18q21.2"; locus "ERV316A3_18q21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2570"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "-109"; repStart "4468"; ### MER4B_18q21.2a ### chr18 rmsk gene 54548372 54553703 . - . gene_id "MER4B_18q21.2a"; transcript_id "MER4B_18q21.2a"; locus "MER4B_18q21.2a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0436"; model_cov "4808"; model_pct "71.1"; chr18 rmsk exon 54548372 54548952 3618 - . gene_id "MER4B_18q21.2a"; transcript_id "MER4B_18q21.2a"; locus "MER4B_18q21.2a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0436"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 54548953 54549320 2036 - . gene_id "MER4B_18q21.2a"; transcript_id "MER4B_18q21.2a"; locus "MER4B_18q21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0436"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6381"; repStart "0"; chr18 rmsk exon 54549725 54550754 5526 - . gene_id "MER4B_18q21.2a"; transcript_id "MER4B_18q21.2a"; locus "MER4B_18q21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0436"; repClass "LTR"; repEnd "6337"; repFamily "ERV1"; repLeft "4945"; repStart "-421"; chr18 rmsk exon 54550760 54553703 8185 - . gene_id "MER4B_18q21.2a"; transcript_id "MER4B_18q21.2a"; locus "MER4B_18q21.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0436"; repClass "LTR"; repEnd "3228"; repFamily "ERV1"; repLeft "189"; repStart "-3530"; ### HML5_18q21.2 ### chr18 rmsk gene 54604823 54607449 . - . gene_id "HML5_18q21.2"; transcript_id "HML5_18q21.2"; locus "HML5_18q21.2"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0113"; model_cov "2171"; model_pct "31.8"; chr18 rmsk exon 54604823 54605034 1586 - . gene_id "HML5_18q21.2"; transcript_id "HML5_18q21.2"; locus "HML5_18q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0113"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "6626"; repStart "0"; chr18 rmsk exon 54605041 54606027 7286 - . gene_id "HML5_18q21.2"; transcript_id "HML5_18q21.2"; locus "HML5_18q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0113"; repClass "LTR"; repEnd "3240"; repFamily "ERVK"; repLeft "2247"; repStart "-3597"; chr18 rmsk exon 54606019 54606975 6483 - . gene_id "HML5_18q21.2"; transcript_id "HML5_18q21.2"; locus "HML5_18q21.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0113"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "14"; repStart "-5856"; chr18 rmsk exon 54606989 54607449 2498 - . gene_id "HML5_18q21.2"; transcript_id "HML5_18q21.2"; locus "HML5_18q21.2"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0113"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4B_18q21.2b ### chr18 rmsk gene 54609804 54610841 . + . gene_id "MER4B_18q21.2b"; transcript_id "MER4B_18q21.2b"; locus "MER4B_18q21.2b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0437"; model_cov "1659"; model_pct "24.5"; chr18 rmsk exon 54609804 54610841 5753 + . gene_id "MER4B_18q21.2b"; transcript_id "MER4B_18q21.2b"; locus "MER4B_18q21.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0437"; repClass "LTR"; repEnd "3985"; repFamily "ERV1"; repLeft "-2773"; repStart "2326"; ### ERVLE_18q21.2g ### chr18 rmsk gene 55212710 55214708 . - . gene_id "ERVLE_18q21.2g"; transcript_id "ERVLE_18q21.2g"; locus "ERVLE_18q21.2g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3375"; model_cov "1832"; model_pct "32.3"; chr18 rmsk exon 55212710 55213245 2211 - . gene_id "ERVLE_18q21.2g"; transcript_id "ERVLE_18q21.2g"; locus "ERVLE_18q21.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3375"; repClass "LTR"; repEnd "1948"; repFamily "ERVL"; repLeft "1414"; repStart "-3719"; chr18 rmsk exon 55213263 55214540 3970 - . gene_id "ERVLE_18q21.2g"; transcript_id "ERVLE_18q21.2g"; locus "ERVLE_18q21.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3375"; repClass "LTR"; repEnd "1309"; repFamily "ERVL"; repLeft "11"; repStart "-4358"; chr18 rmsk exon 55214541 55214708 409 - . gene_id "ERVLE_18q21.2g"; transcript_id "ERVLE_18q21.2g"; locus "ERVLE_18q21.2g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3375"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "353"; repStart "-92"; ### HERVEA_18q21.2 ### chr18 rmsk gene 55950396 55957981 . + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0082"; model_cov "6702"; model_pct "85.4"; chr18 rmsk exon 55950396 55950850 3032 + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0082"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 55950851 55955090 34777 + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0082"; repClass "LTR"; repEnd "4239"; repFamily "ERV1"; repLeft "-3608"; repStart "1"; chr18 rmsk exon 55955089 55955198 823 + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0082"; repClass "LTR"; repEnd "4919"; repFamily "ERV1"; repLeft "-2928"; repStart "4810"; chr18 rmsk exon 55955195 55957518 19163 + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0082"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "5492"; chr18 rmsk exon 55957519 55957981 3282 + . gene_id "HERVEA_18q21.2"; transcript_id "HERVEA_18q21.2"; locus "HERVEA_18q21.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0082"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_18q21.2h ### chr18 rmsk gene 56088850 56089747 . + . gene_id "ERVLE_18q21.2h"; transcript_id "ERVLE_18q21.2h"; locus "ERVLE_18q21.2h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3376"; model_cov "1000"; model_pct "17.6"; chr18 rmsk exon 56088850 56089747 1861 + . gene_id "ERVLE_18q21.2h"; transcript_id "ERVLE_18q21.2h"; locus "ERVLE_18q21.2h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3376"; repClass "LTR"; repEnd "1050"; repFamily "ERVL"; repLeft "-4617"; repStart "50"; ### HERVH_18q21.31a ### chr18 rmsk gene 56415436 56421341 . + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1133"; model_cov "4883"; model_pct "63.3"; chr18 rmsk exon 56415436 56415883 3539 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr18 rmsk exon 56415886 56419012 15985 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr18 rmsk exon 56418992 56419141 912 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr18 rmsk exon 56419132 56419634 3200 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr18 rmsk exon 56419637 56420298 4178 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr18 rmsk exon 56420300 56420515 1289 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr18 rmsk exon 56420516 56420857 2166 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "7682"; repFamily "ERV1"; repLeft "-31"; repStart "7324"; chr18 rmsk exon 56420894 56421341 3605 + . gene_id "HERVH_18q21.31a"; transcript_id "HERVH_18q21.31a"; locus "HERVH_18q21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1133"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_18q21.31b ### chr18 rmsk gene 57064649 57072502 . - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1134"; model_cov "6860"; model_pct "88.9"; chr18 rmsk exon 57064649 57065099 3515 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr18 rmsk exon 57065100 57068321 26369 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4488"; repStart "0"; chr18 rmsk exon 57068324 57068826 3494 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr18 rmsk exon 57068817 57068961 757 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr18 rmsk exon 57068958 57072049 17118 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1"; repStart "-4728"; chr18 rmsk exon 57072052 57072502 3532 - . gene_id "HERVH_18q21.31b"; transcript_id "HERVH_18q21.31b"; locus "HERVH_18q21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1134"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_18q21.31 ### chr18 rmsk gene 57399701 57401876 . + . gene_id "ERV316A3_18q21.31"; transcript_id "ERV316A3_18q21.31"; locus "ERV316A3_18q21.31"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2572"; model_cov "1757"; model_pct "33.6"; chr18 rmsk exon 57399701 57401464 4174 + . gene_id "ERV316A3_18q21.31"; transcript_id "ERV316A3_18q21.31"; locus "ERV316A3_18q21.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2572"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "3468"; chr18 rmsk exon 57401486 57401876 903 + . gene_id "ERV316A3_18q21.31"; transcript_id "ERV316A3_18q21.31"; locus "ERV316A3_18q21.31"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2572"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "22"; ### ERVLE_18q21.31 ### chr18 rmsk gene 57625855 57627778 . + . gene_id "ERVLE_18q21.31"; transcript_id "ERVLE_18q21.31"; locus "ERVLE_18q21.31"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3378"; model_cov "986"; model_pct "17.4"; chr18 rmsk exon 57625855 57626025 2233 + . gene_id "ERVLE_18q21.31"; transcript_id "ERVLE_18q21.31"; locus "ERVLE_18q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3378"; repClass "LTR"; repEnd "3673"; repFamily "ERVL"; repLeft "-1994"; repStart "3505"; chr18 rmsk exon 57626335 57626469 2233 + . gene_id "ERVLE_18q21.31"; transcript_id "ERVLE_18q21.31"; locus "ERVLE_18q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3378"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1897"; repStart "3674"; chr18 rmsk exon 57626772 57627197 2233 + . gene_id "ERVLE_18q21.31"; transcript_id "ERVLE_18q21.31"; locus "ERVLE_18q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3378"; repClass "LTR"; repEnd "4191"; repFamily "ERVL"; repLeft "-1476"; repStart "3771"; chr18 rmsk exon 57627508 57627778 2233 + . gene_id "ERVLE_18q21.31"; transcript_id "ERVLE_18q21.31"; locus "ERVLE_18q21.31"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3378"; repClass "LTR"; repEnd "4494"; repFamily "ERVL"; repLeft "-1173"; repStart "4192"; ### HERVH_18q21.32 ### chr18 rmsk gene 58641222 58646708 . - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1135"; model_cov "4383"; model_pct "56.8"; chr18 rmsk exon 58641222 58641574 1952 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 58641575 58642134 3705 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr18 rmsk exon 58642128 58642422 1384 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr18 rmsk exon 58642423 58643583 7235 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "3806"; repStart "-2803"; chr18 rmsk exon 58643578 58644058 1808 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3066"; repStart "-4126"; chr18 rmsk exon 58644038 58645518 9246 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "2277"; repFamily "ERV1"; repLeft "801"; repStart "-5436"; chr18 rmsk exon 58645547 58645851 1869 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "186"; repStart "-7254"; chr18 rmsk exon 58646152 58646336 1869 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "185"; repFamily "ERV1"; repLeft "1"; repStart "-7528"; chr18 rmsk exon 58646337 58646708 2078 - . gene_id "HERVH_18q21.32"; transcript_id "HERVH_18q21.32"; locus "HERVH_18q21.32"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1135"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_18q21.32a ### chr18 rmsk gene 59079429 59080033 . - . gene_id "ERVLE_18q21.32a"; transcript_id "ERVLE_18q21.32a"; locus "ERVLE_18q21.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3379"; model_cov "686"; model_pct "12.1"; chr18 rmsk exon 59079429 59080033 1576 - . gene_id "ERVLE_18q21.32a"; transcript_id "ERVLE_18q21.32a"; locus "ERVLE_18q21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3379"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3333"; repStart "-1648"; ### ERVLE_18q21.32b ### chr18 rmsk gene 59127695 59131245 . - . gene_id "ERVLE_18q21.32b"; transcript_id "ERVLE_18q21.32b"; locus "ERVLE_18q21.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3380"; model_cov "3569"; model_pct "63.0"; chr18 rmsk exon 59127695 59131245 11789 - . gene_id "ERVLE_18q21.32b"; transcript_id "ERVLE_18q21.32b"; locus "ERVLE_18q21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3380"; repClass "LTR"; repEnd "5358"; repFamily "ERVL"; repLeft "1789"; repStart "-309"; ### ERVLE_18q21.32c ### chr18 rmsk gene 59187777 59192081 . - . gene_id "ERVLE_18q21.32c"; transcript_id "ERVLE_18q21.32c"; locus "ERVLE_18q21.32c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3381"; model_cov "3517"; model_pct "62.1"; chr18 rmsk exon 59187777 59188502 1659 - . gene_id "ERVLE_18q21.32c"; transcript_id "ERVLE_18q21.32c"; locus "ERVLE_18q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3381"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "3942"; repStart "-929"; chr18 rmsk exon 59188867 59188962 1395 - . gene_id "ERVLE_18q21.32c"; transcript_id "ERVLE_18q21.32c"; locus "ERVLE_18q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3381"; repClass "LTR"; repEnd "3941"; repFamily "ERVL"; repLeft "3829"; repStart "-1726"; chr18 rmsk exon 59189488 59192081 8325 - . gene_id "ERVLE_18q21.32c"; transcript_id "ERVLE_18q21.32c"; locus "ERVLE_18q21.32c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3381"; repClass "LTR"; repEnd "3817"; repFamily "ERVL"; repLeft "1208"; repStart "-1850"; ### MER61_18q21.32 ### chr18 rmsk gene 59202527 59207935 . + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0353"; model_cov "5239"; model_pct "100.0"; chr18 rmsk exon 59202527 59202853 1903 + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0353"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 59202854 59205664 20974 + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0353"; repClass "LTR"; repEnd "4073"; repFamily "ERV1"; repLeft "-1144"; repStart "213"; chr18 rmsk exon 59205965 59207291 20974 + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0353"; repClass "LTR"; repEnd "5159"; repFamily "ERV1"; repLeft "-58"; repStart "3826"; chr18 rmsk exon 59207555 59207606 20974 + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0353"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-11"; repStart "5160"; chr18 rmsk exon 59207607 59207935 1863 + . gene_id "MER61_18q21.32"; transcript_id "MER61_18q21.32"; locus "MER61_18q21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0353"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "11"; ### ERVLB4_18q21.32 ### chr18 rmsk gene 59476749 59478335 . + . gene_id "ERVLB4_18q21.32"; transcript_id "ERVLB4_18q21.32"; locus "ERVLB4_18q21.32"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1630"; model_cov "1063"; model_pct "18.6"; chr18 rmsk exon 59476749 59476806 410 + . gene_id "ERVLB4_18q21.32"; transcript_id "ERVLB4_18q21.32"; locus "ERVLB4_18q21.32"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1630"; repClass "LTR"; repEnd "58"; repFamily "ERVL"; repLeft "-356"; repStart "1"; chr18 rmsk exon 59476807 59477538 5755 + . gene_id "ERVLB4_18q21.32"; transcript_id "ERVLB4_18q21.32"; locus "ERVLB4_18q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1630"; repClass "LTR"; repEnd "5386"; repFamily "ERVL"; repLeft "-328"; repStart "4650"; chr18 rmsk exon 59477567 59477884 5755 + . gene_id "ERVLB4_18q21.32"; transcript_id "ERVLB4_18q21.32"; locus "ERVLB4_18q21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1630"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5387"; chr18 rmsk exon 59477885 59478335 1668 + . gene_id "ERVLB4_18q21.32"; transcript_id "ERVLB4_18q21.32"; locus "ERVLB4_18q21.32"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1630"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_18q21.32 ### chr18 rmsk gene 59558413 59562030 . + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0140"; model_cov "1943"; model_pct "32.1"; chr18 rmsk exon 59558413 59559019 3189 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "3"; chr18 rmsk exon 59559041 59559312 1382 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "295"; repFamily "ERVL"; repLeft "-5752"; repStart "19"; chr18 rmsk exon 59559309 59559444 644 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "629"; repFamily "ERVL"; repLeft "-5418"; repStart "492"; chr18 rmsk exon 59559518 59559869 1152 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1397"; chr18 rmsk exon 59559869 59560091 750 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chr18 rmsk exon 59560089 59560321 1307 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "-3086"; repStart "2718"; chr18 rmsk exon 59560688 59561201 2987 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "3488"; repFamily "ERVL"; repLeft "-2559"; repStart "2947"; chr18 rmsk exon 59561407 59562030 2854 + . gene_id "HERVL18_18q21.32"; transcript_id "HERVL18_18q21.32"; locus "HERVL18_18q21.32"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0140"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### PRIMA41_18q21.32 ### chr18 rmsk gene 59732078 59737922 . - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0137"; model_cov "4885"; model_pct "63.0"; chr18 rmsk exon 59732078 59735757 3994 - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0137"; repClass "LTR"; repEnd "6068"; repFamily "ERV1"; repLeft "2372"; repStart "-1688"; chr18 rmsk exon 59736041 59736592 3994 - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0137"; repClass "LTR"; repEnd "2371"; repFamily "ERV1"; repLeft "1823"; repStart "-5385"; chr18 rmsk exon 59736898 59737028 3994 - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0137"; repClass "LTR"; repEnd "1822"; repFamily "ERV1"; repLeft "1692"; repStart "-5934"; chr18 rmsk exon 59737136 59737283 1392 - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0137"; repClass "LTR"; repEnd "1352"; repFamily "ERV1"; repLeft "1176"; repStart "-6404"; chr18 rmsk exon 59737589 59737922 1392 - . gene_id "PRIMA41_18q21.32"; transcript_id "PRIMA41_18q21.32"; locus "PRIMA41_18q21.32"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0137"; repClass "LTR"; repEnd "1175"; repFamily "ERV1"; repLeft "840"; repStart "-6581"; ### ERV316A3_18q21.32 ### chr18 rmsk gene 60543511 60545006 . - . gene_id "ERV316A3_18q21.32"; transcript_id "ERV316A3_18q21.32"; locus "ERV316A3_18q21.32"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2573"; model_cov "946"; model_pct "18.1"; chr18 rmsk exon 60543511 60543888 757 - . gene_id "ERV316A3_18q21.32"; transcript_id "ERV316A3_18q21.32"; locus "ERV316A3_18q21.32"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2573"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "50"; repStart "0"; chr18 rmsk exon 60544090 60545006 1696 - . gene_id "ERV316A3_18q21.32"; transcript_id "ERV316A3_18q21.32"; locus "ERV316A3_18q21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2573"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "4088"; repStart "-192"; ### HERVW_18q21.32 ### chr18 rmsk gene 60710607 60713716 . + . gene_id "HERVW_18q21.32"; transcript_id "HERVW_18q21.32"; locus "HERVW_18q21.32"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0282"; model_cov "2804"; model_pct "32.5"; chr18 rmsk exon 60710607 60713077 20180 + . gene_id "HERVW_18q21.32"; transcript_id "HERVW_18q21.32"; locus "HERVW_18q21.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0282"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3544"; chr18 rmsk exon 60713071 60713109 298 + . gene_id "HERVW_18q21.32"; transcript_id "HERVW_18q21.32"; locus "HERVW_18q21.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0282"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr18 rmsk exon 60713100 60713391 2460 + . gene_id "HERVW_18q21.32"; transcript_id "HERVW_18q21.32"; locus "HERVW_18q21.32"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0282"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chr18 rmsk exon 60713392 60713716 2512 + . gene_id "HERVW_18q21.32"; transcript_id "HERVW_18q21.32"; locus "HERVW_18q21.32"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0282"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### LTR19_18q21.33 ### chr18 rmsk gene 61618776 61625061 . + . gene_id "LTR19_18q21.33"; transcript_id "LTR19_18q21.33"; locus "LTR19_18q21.33"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0051"; model_cov "5428"; model_pct "97.2"; chr18 rmsk exon 61618776 61619247 3465 + . gene_id "LTR19_18q21.33"; transcript_id "LTR19_18q21.33"; locus "LTR19_18q21.33"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0051"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 61619248 61620528 8739 + . gene_id "LTR19_18q21.33"; transcript_id "LTR19_18q21.33"; locus "LTR19_18q21.33"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0051"; repClass "LTR"; repEnd "1283"; repFamily "ERV1"; repLeft "-4303"; repStart "1"; chr18 rmsk exon 61620531 61624613 32641 + . gene_id "LTR19_18q21.33"; transcript_id "LTR19_18q21.33"; locus "LTR19_18q21.33"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0051"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "1440"; chr18 rmsk exon 61624614 61625061 2791 + . gene_id "LTR19_18q21.33"; transcript_id "LTR19_18q21.33"; locus "LTR19_18q21.33"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0051"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_18q21.33 ### chr18 rmsk gene 61707023 61715310 . + . gene_id "PRIMA41_18q21.33"; transcript_id "PRIMA41_18q21.33"; locus "PRIMA41_18q21.33"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0138"; model_cov "7753"; model_pct "100.0"; chr18 rmsk exon 61707023 61707387 2173 + . gene_id "PRIMA41_18q21.33"; transcript_id "PRIMA41_18q21.33"; locus "PRIMA41_18q21.33"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0138"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "145"; chr18 rmsk exon 61707390 61715042 47760 + . gene_id "PRIMA41_18q21.33"; transcript_id "PRIMA41_18q21.33"; locus "PRIMA41_18q21.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0138"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr18 rmsk exon 61715043 61715310 1866 + . gene_id "PRIMA41_18q21.33"; transcript_id "PRIMA41_18q21.33"; locus "PRIMA41_18q21.33"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0138"; repClass "LTR"; repEnd "273"; repFamily "ERV1"; repLeft "-248"; repStart "1"; ### MER41_18q21.33 ### chr18 rmsk gene 62863503 62865015 . - . gene_id "MER41_18q21.33"; transcript_id "MER41_18q21.33"; locus "MER41_18q21.33"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0504"; model_cov "745"; model_pct "12.5"; chr18 rmsk exon 62863503 62863962 3047 - . gene_id "MER41_18q21.33"; transcript_id "MER41_18q21.33"; locus "MER41_18q21.33"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0504"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "1"; repStart "-180"; chr18 rmsk exon 62864323 62865015 4463 - . gene_id "MER41_18q21.33"; transcript_id "MER41_18q21.33"; locus "MER41_18q21.33"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0504"; repClass "LTR"; repEnd "3835"; repFamily "ERV1"; repLeft "3090"; repStart "-2111"; ### ERVLE_18q21.33 ### chr18 rmsk gene 63383992 63385494 . - . gene_id "ERVLE_18q21.33"; transcript_id "ERVLE_18q21.33"; locus "ERVLE_18q21.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3383"; model_cov "742"; model_pct "13.1"; chr18 rmsk exon 63383992 63384261 693 - . gene_id "ERVLE_18q21.33"; transcript_id "ERVLE_18q21.33"; locus "ERVLE_18q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3383"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "1712"; repStart "-3677"; chr18 rmsk exon 63385053 63385264 394 - . gene_id "ERVLE_18q21.33"; transcript_id "ERVLE_18q21.33"; locus "ERVLE_18q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3383"; repClass "LTR"; repEnd "1110"; repFamily "ERVL"; repLeft "892"; repStart "-4557"; chr18 rmsk exon 63385260 63385494 329 - . gene_id "ERVLE_18q21.33"; transcript_id "ERVLE_18q21.33"; locus "ERVLE_18q21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3383"; repClass "LTR"; repEnd "602"; repFamily "ERVL"; repLeft "356"; repStart "-5065"; ### MER101_18q21.33a ### chr18 rmsk gene 63520831 63524749 . - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0376"; model_cov "3554"; model_pct "53.5"; chr18 rmsk exon 63520831 63521280 2290 - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0376"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 63521281 63521599 1245 - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0376"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6315"; repStart "0"; chr18 rmsk exon 63521602 63523858 4741 - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0376"; repClass "LTR"; repEnd "4040"; repFamily "ERV1"; repLeft "1275"; repStart "-2599"; chr18 rmsk exon 63523984 63524283 1327 - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0376"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "2460"; repStart "-3877"; chr18 rmsk exon 63524591 63524749 1327 - . gene_id "MER101_18q21.33a"; transcript_id "MER101_18q21.33a"; locus "MER101_18q21.33a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0376"; repClass "LTR"; repEnd "2459"; repFamily "ERV1"; repLeft "2296"; repStart "-4180"; ### MER101_18q21.33b ### chr18 rmsk gene 63525049 63526319 . - . gene_id "MER101_18q21.33b"; transcript_id "MER101_18q21.33b"; locus "MER101_18q21.33b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0377"; model_cov "1022"; model_pct "15.4"; chr18 rmsk exon 63525049 63526319 3584 - . gene_id "MER101_18q21.33b"; transcript_id "MER101_18q21.33b"; locus "MER101_18q21.33b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0377"; repClass "LTR"; repEnd "3008"; repFamily "ERV1"; repLeft "1986"; repStart "-3631"; ### MER101_18q21.33c ### chr18 rmsk gene 63526469 63529522 . - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0378"; model_cov "1452"; model_pct "21.9"; chr18 rmsk exon 63526469 63526767 3584 - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0378"; repClass "LTR"; repEnd "3526"; repFamily "ERV1"; repLeft "3243"; repStart "-3113"; chr18 rmsk exon 63527105 63527449 3584 - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0378"; repClass "LTR"; repEnd "3242"; repFamily "ERV1"; repLeft "2865"; repStart "-3397"; chr18 rmsk exon 63528254 63528392 2266 - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0378"; repClass "LTR"; repEnd "2593"; repFamily "ERV1"; repLeft "2456"; repStart "-4046"; chr18 rmsk exon 63528428 63529057 2266 - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0378"; repClass "LTR"; repEnd "2455"; repFamily "ERV1"; repLeft "1800"; repStart "-4184"; chr18 rmsk exon 63529084 63529522 2029 - . gene_id "MER101_18q21.33c"; transcript_id "MER101_18q21.33c"; locus "MER101_18q21.33c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0378"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_18q22.1a ### chr18 rmsk gene 64189883 64192337 . - . gene_id "ERV316A3_18q22.1a"; transcript_id "ERV316A3_18q22.1a"; locus "ERV316A3_18q22.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2575"; model_cov "1289"; model_pct "24.7"; chr18 rmsk exon 64189883 64190149 654 - . gene_id "ERV316A3_18q22.1a"; transcript_id "ERV316A3_18q22.1a"; locus "ERV316A3_18q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2575"; repClass "LTR"; repEnd "4593"; repFamily "ERVL"; repLeft "4350"; repStart "-633"; chr18 rmsk exon 64190511 64191005 654 - . gene_id "ERV316A3_18q22.1a"; transcript_id "ERV316A3_18q22.1a"; locus "ERV316A3_18q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2575"; repClass "LTR"; repEnd "4349"; repFamily "ERVL"; repLeft "3908"; repStart "-877"; chr18 rmsk exon 64191754 64192337 586 - . gene_id "ERV316A3_18q22.1a"; transcript_id "ERV316A3_18q22.1a"; locus "ERV316A3_18q22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2575"; repClass "LTR"; repEnd "3098"; repFamily "ERVL"; repLeft "2493"; repStart "-2128"; ### ERVLE_18q22.1a ### chr18 rmsk gene 64236372 64237163 . - . gene_id "ERVLE_18q22.1a"; transcript_id "ERVLE_18q22.1a"; locus "ERVLE_18q22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3385"; model_cov "808"; model_pct "14.3"; chr18 rmsk exon 64236372 64237163 1065 - . gene_id "ERVLE_18q22.1a"; transcript_id "ERVLE_18q22.1a"; locus "ERVLE_18q22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3385"; repClass "LTR"; repEnd "1357"; repFamily "ERVL"; repLeft "549"; repStart "-4310"; ### ERV316A3_18q22.1b ### chr18 rmsk gene 64466951 64470786 . + . gene_id "ERV316A3_18q22.1b"; transcript_id "ERV316A3_18q22.1b"; locus "ERV316A3_18q22.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2576"; model_cov "3511"; model_pct "67.2"; chr18 rmsk exon 64466951 64468557 5812 + . gene_id "ERV316A3_18q22.1b"; transcript_id "ERV316A3_18q22.1b"; locus "ERV316A3_18q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2576"; repClass "LTR"; repEnd "2935"; repFamily "ERVL"; repLeft "-2291"; repStart "1280"; chr18 rmsk exon 64468916 64470266 5812 + . gene_id "ERV316A3_18q22.1b"; transcript_id "ERV316A3_18q22.1b"; locus "ERV316A3_18q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2576"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "-904"; repStart "2936"; chr18 rmsk exon 64470291 64470540 542 + . gene_id "ERV316A3_18q22.1b"; transcript_id "ERV316A3_18q22.1b"; locus "ERV316A3_18q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2576"; repClass "LTR"; repEnd "4540"; repFamily "ERVL"; repLeft "-686"; repStart "4316"; chr18 rmsk exon 64470544 64470786 552 + . gene_id "ERV316A3_18q22.1b"; transcript_id "ERV316A3_18q22.1b"; locus "ERV316A3_18q22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2576"; repClass "LTR"; repEnd "4893"; repFamily "ERVL"; repLeft "-333"; repStart "4647"; ### HERVL_18q22.1a ### chr18 rmsk gene 64529802 64536937 . - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1187"; model_cov "4163"; model_pct "73.6"; chr18 rmsk exon 64529802 64530350 2145 - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1187"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr18 rmsk exon 64530351 64532731 25464 - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1187"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3322"; repStart "0"; chr18 rmsk exon 64535030 64536241 25464 - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1187"; repClass "LTR"; repEnd "3321"; repFamily "ERVL"; repLeft "2119"; repStart "-2333"; chr18 rmsk exon 64536239 64536873 4233 - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1187"; repClass "LTR"; repEnd "630"; repFamily "ERVL"; repLeft "1"; repStart "-5024"; chr18 rmsk exon 64536874 64536937 349 - . gene_id "HERVL_18q22.1a"; transcript_id "HERVL_18q22.1a"; locus "HERVL_18q22.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1187"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "370"; repStart "0"; ### HERVL40_18q22.1a ### chr18 rmsk gene 64617970 64622678 . - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0409"; model_cov "3284"; model_pct "59.4"; chr18 rmsk exon 64617970 64618308 717 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "3877"; repFamily "ERVL"; repLeft "3528"; repStart "-1653"; chr18 rmsk exon 64618358 64619702 2361 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "3439"; repFamily "ERVL"; repLeft "2049"; repStart "-2091"; chr18 rmsk exon 64619718 64619873 2176 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "1451"; repStart "-3921"; chr18 rmsk exon 64620260 64620545 2176 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "1450"; repFamily "ERVL"; repLeft "1164"; repStart "-4080"; chr18 rmsk exon 64620895 64621754 2176 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "1163"; repFamily "ERVL"; repLeft "333"; repStart "-4367"; chr18 rmsk exon 64621904 64622155 804 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "19"; repStart "-5240"; chr18 rmsk exon 64622171 64622678 1367 - . gene_id "HERVL40_18q22.1a"; transcript_id "HERVL40_18q22.1a"; locus "HERVL40_18q22.1a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0409"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_18q22.1 ### chr18 rmsk gene 64681731 64687323 . + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1136"; model_cov "4906"; model_pct "63.6"; chr18 rmsk exon 64681731 64682131 2498 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr18 rmsk exon 64682134 64685032 15217 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr18 rmsk exon 64685027 64685174 857 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr18 rmsk exon 64685165 64685668 3346 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr18 rmsk exon 64685671 64686332 4412 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr18 rmsk exon 64686334 64686544 1252 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr18 rmsk exon 64686545 64686922 2473 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr18 rmsk exon 64686923 64687323 2534 + . gene_id "HERVH_18q22.1"; transcript_id "HERVH_18q22.1"; locus "HERVH_18q22.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1136"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLB4_18q22.1a ### chr18 rmsk gene 64734332 64738049 . + . gene_id "ERVLB4_18q22.1a"; transcript_id "ERVLB4_18q22.1a"; locus "ERVLB4_18q22.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1632"; model_cov "2994"; model_pct "52.4"; chr18 rmsk exon 64734332 64734798 4081 + . gene_id "ERVLB4_18q22.1a"; transcript_id "ERVLB4_18q22.1a"; locus "ERVLB4_18q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1632"; repClass "LTR"; repEnd "1719"; repFamily "ERVL"; repLeft "-3995"; repStart "1251"; chr18 rmsk exon 64735108 64735462 4081 + . gene_id "ERVLB4_18q22.1a"; transcript_id "ERVLB4_18q22.1a"; locus "ERVLB4_18q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1632"; repClass "LTR"; repEnd "2073"; repFamily "ERVL"; repLeft "-3641"; repStart "1720"; chr18 rmsk exon 64735469 64737575 11445 + . gene_id "ERVLB4_18q22.1a"; transcript_id "ERVLB4_18q22.1a"; locus "ERVLB4_18q22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1632"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "-1319"; repStart "2222"; chr18 rmsk exon 64737895 64738049 471 + . gene_id "ERVLB4_18q22.1a"; transcript_id "ERVLB4_18q22.1a"; locus "ERVLB4_18q22.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1632"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "388"; ### HUERSP3_18q22.1 ### chr18 rmsk gene 64812747 64816172 . + . gene_id "HUERSP3_18q22.1"; transcript_id "HUERSP3_18q22.1"; locus "HUERSP3_18q22.1"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0186"; model_cov "4912"; model_pct "55.1"; chr18 rmsk exon 64812747 64813322 3685 + . gene_id "HUERSP3_18q22.1"; transcript_id "HUERSP3_18q22.1"; locus "HUERSP3_18q22.1"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0186"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 64813326 64816172 11260 + . gene_id "HUERSP3_18q22.1"; transcript_id "HUERSP3_18q22.1"; locus "HUERSP3_18q22.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0186"; repClass "LTR"; repEnd "8618"; repFamily "ERV1"; repLeft "-301"; repStart "3706"; ### ERV316A3_18q22.1c ### chr18 rmsk gene 64830307 64832376 . - . gene_id "ERV316A3_18q22.1c"; transcript_id "ERV316A3_18q22.1c"; locus "ERV316A3_18q22.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2578"; model_cov "1716"; model_pct "32.8"; chr18 rmsk exon 64830307 64831067 2184 - . gene_id "ERV316A3_18q22.1c"; transcript_id "ERV316A3_18q22.1c"; locus "ERV316A3_18q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2578"; repClass "LTR"; repEnd "2663"; repFamily "ERVL"; repLeft "1905"; repStart "-2563"; chr18 rmsk exon 64831431 64832376 2184 - . gene_id "ERV316A3_18q22.1c"; transcript_id "ERV316A3_18q22.1c"; locus "ERV316A3_18q22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2578"; repClass "LTR"; repEnd "1904"; repFamily "ERVL"; repLeft "946"; repStart "-3322"; ### ERV316A3_18q22.1d ### chr18 rmsk gene 65125014 65126258 . - . gene_id "ERV316A3_18q22.1d"; transcript_id "ERV316A3_18q22.1d"; locus "ERV316A3_18q22.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2579"; model_cov "532"; model_pct "10.2"; chr18 rmsk exon 65125014 65125429 833 - . gene_id "ERV316A3_18q22.1d"; transcript_id "ERV316A3_18q22.1d"; locus "ERV316A3_18q22.1d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2579"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18 rmsk exon 65125548 65126015 770 - . gene_id "ERV316A3_18q22.1d"; transcript_id "ERV316A3_18q22.1d"; locus "ERV316A3_18q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2579"; repClass "LTR"; repEnd "5065"; repFamily "ERVL"; repLeft "4674"; repStart "-161"; chr18 rmsk exon 65126125 65126258 369 - . gene_id "ERV316A3_18q22.1d"; transcript_id "ERV316A3_18q22.1d"; locus "ERV316A3_18q22.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2579"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "4289"; repStart "-796"; ### ERVLE_18q22.1b ### chr18 rmsk gene 65139914 65142862 . - . gene_id "ERVLE_18q22.1b"; transcript_id "ERVLE_18q22.1b"; locus "ERVLE_18q22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3387"; model_cov "2009"; model_pct "35.5"; chr18 rmsk exon 65139914 65140776 1357 - . gene_id "ERVLE_18q22.1b"; transcript_id "ERVLE_18q22.1b"; locus "ERVLE_18q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3387"; repClass "LTR"; repEnd "3139"; repFamily "ERVL"; repLeft "2246"; repStart "-2528"; chr18 rmsk exon 65141336 65142061 692 - . gene_id "ERVLE_18q22.1b"; transcript_id "ERVLE_18q22.1b"; locus "ERVLE_18q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3387"; repClass "LTR"; repEnd "1707"; repFamily "ERVL"; repLeft "959"; repStart "-3960"; chr18 rmsk exon 65142505 65142862 442 - . gene_id "ERVLE_18q22.1b"; transcript_id "ERVLE_18q22.1b"; locus "ERVLE_18q22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3387"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "110"; repStart "-5189"; ### ERVLE_18q22.1c ### chr18 rmsk gene 65264261 65265396 . - . gene_id "ERVLE_18q22.1c"; transcript_id "ERVLE_18q22.1c"; locus "ERVLE_18q22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3388"; model_cov "871"; model_pct "15.4"; chr18 rmsk exon 65264261 65264918 1293 - . gene_id "ERVLE_18q22.1c"; transcript_id "ERVLE_18q22.1c"; locus "ERVLE_18q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3388"; repClass "LTR"; repEnd "5150"; repFamily "ERVL"; repLeft "4472"; repStart "-517"; chr18 rmsk exon 65265213 65265396 1293 - . gene_id "ERVLE_18q22.1c"; transcript_id "ERVLE_18q22.1c"; locus "ERVLE_18q22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3388"; repClass "LTR"; repEnd "4471"; repFamily "ERVL"; repLeft "4278"; repStart "-1196"; ### ERVL_18q22.1a ### chr18 rmsk gene 65274602 65275820 . + . gene_id "ERVL_18q22.1a"; transcript_id "ERVL_18q22.1a"; locus "ERVL_18q22.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0430"; model_cov "897"; model_pct "15.6"; chr18 rmsk exon 65274602 65275466 4571 + . gene_id "ERVL_18q22.1a"; transcript_id "ERVL_18q22.1a"; locus "ERVL_18q22.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0430"; repClass "LTR"; repEnd "5749"; repFamily "ERVL"; repLeft "-8"; repStart "4852"; chr18 rmsk exon 65275476 65275820 1232 + . gene_id "ERVL_18q22.1a"; transcript_id "ERVL_18q22.1a"; locus "ERVL_18q22.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0430"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "-55"; repStart "1"; ### ERV316A3_18q22.1e ### chr18 rmsk gene 65325400 65327255 . - . gene_id "ERV316A3_18q22.1e"; transcript_id "ERV316A3_18q22.1e"; locus "ERV316A3_18q22.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2581"; model_cov "717"; model_pct "13.7"; chr18 rmsk exon 65325400 65325645 557 - . gene_id "ERV316A3_18q22.1e"; transcript_id "ERV316A3_18q22.1e"; locus "ERV316A3_18q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2581"; repClass "LTR"; repEnd "1423"; repFamily "ERVL"; repLeft "1182"; repStart "-3803"; chr18 rmsk exon 65326058 65326225 378 - . gene_id "ERV316A3_18q22.1e"; transcript_id "ERV316A3_18q22.1e"; locus "ERV316A3_18q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2581"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "1230"; repStart "-3839"; chr18 rmsk exon 65326506 65326805 309 - . gene_id "ERV316A3_18q22.1e"; transcript_id "ERV316A3_18q22.1e"; locus "ERV316A3_18q22.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2581"; repClass "LTR"; repEnd "639"; repFamily "ERVL"; repLeft "320"; repStart "-4587"; chr18 rmsk exon 65327085 65327255 575 - . gene_id "ERV316A3_18q22.1e"; transcript_id "ERV316A3_18q22.1e"; locus "ERV316A3_18q22.1e"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2581"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "270"; repStart "-3"; ### HERVL40_18q22.1b ### chr18 rmsk gene 65362187 65363529 . - . gene_id "HERVL40_18q22.1b"; transcript_id "HERVL40_18q22.1b"; locus "HERVL40_18q22.1b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0410"; model_cov "1046"; model_pct "18.9"; chr18 rmsk exon 65362187 65362360 3159 - . gene_id "HERVL40_18q22.1b"; transcript_id "HERVL40_18q22.1b"; locus "HERVL40_18q22.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0410"; repClass "LTR"; repEnd "3875"; repFamily "ERVL"; repLeft "3714"; repStart "-1655"; chr18 rmsk exon 65362640 65363529 3159 - . gene_id "HERVL40_18q22.1b"; transcript_id "HERVL40_18q22.1b"; locus "HERVL40_18q22.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0410"; repClass "LTR"; repEnd "3713"; repFamily "ERVL"; repLeft "2828"; repStart "-1817"; ### ERV316A3_18q22.1f ### chr18 rmsk gene 65363823 65365319 . - . gene_id "ERV316A3_18q22.1f"; transcript_id "ERV316A3_18q22.1f"; locus "ERV316A3_18q22.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2582"; model_cov "828"; model_pct "15.8"; chr18 rmsk exon 65363823 65364180 769 - . gene_id "ERV316A3_18q22.1f"; transcript_id "ERV316A3_18q22.1f"; locus "ERV316A3_18q22.1f"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2582"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "39"; repStart "-96"; chr18 rmsk exon 65364490 65365247 1160 - . gene_id "ERV316A3_18q22.1f"; transcript_id "ERV316A3_18q22.1f"; locus "ERV316A3_18q22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2582"; repClass "LTR"; repEnd "4844"; repFamily "ERVL"; repLeft "4087"; repStart "-382"; chr18 rmsk exon 65365249 65365319 296 - . gene_id "ERV316A3_18q22.1f"; transcript_id "ERV316A3_18q22.1f"; locus "ERV316A3_18q22.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2582"; repClass "LTR"; repEnd "3127"; repFamily "ERVL"; repLeft "3056"; repStart "-2099"; ### ERV316A3_18q22.1g ### chr18 rmsk gene 65365971 65368048 . - . gene_id "ERV316A3_18q22.1g"; transcript_id "ERV316A3_18q22.1g"; locus "ERV316A3_18q22.1g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2583"; model_cov "1088"; model_pct "20.8"; chr18 rmsk exon 65365971 65366436 683 - . gene_id "ERV316A3_18q22.1g"; transcript_id "ERV316A3_18q22.1g"; locus "ERV316A3_18q22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2583"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "2840"; repStart "-1925"; chr18 rmsk exon 65367418 65368048 1084 - . gene_id "ERV316A3_18q22.1g"; transcript_id "ERV316A3_18q22.1g"; locus "ERV316A3_18q22.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2583"; repClass "LTR"; repEnd "2093"; repFamily "ERVL"; repLeft "1466"; repStart "-3133"; ### ERVLE_18q22.1d ### chr18 rmsk gene 65626497 65630935 . + . gene_id "ERVLE_18q22.1d"; transcript_id "ERVLE_18q22.1d"; locus "ERVLE_18q22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3390"; model_cov "3252"; model_pct "57.4"; chr18 rmsk exon 65626497 65628475 2244 + . gene_id "ERVLE_18q22.1d"; transcript_id "ERVLE_18q22.1d"; locus "ERVLE_18q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3390"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "-2426"; repStart "1220"; chr18 rmsk exon 65628515 65629211 2244 + . gene_id "ERVLE_18q22.1d"; transcript_id "ERVLE_18q22.1d"; locus "ERVLE_18q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3390"; repClass "LTR"; repEnd "4310"; repFamily "ERVL"; repLeft "-1357"; repStart "3563"; chr18 rmsk exon 65630474 65630935 656 + . gene_id "ERVLE_18q22.1d"; transcript_id "ERVLE_18q22.1d"; locus "ERVLE_18q22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3390"; repClass "LTR"; repEnd "5125"; repFamily "ERVL"; repLeft "-542"; repStart "4641"; ### ERV316A3_18q22.1h ### chr18 rmsk gene 65698231 65700560 . - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2584"; model_cov "1061"; model_pct "20.3"; chr18 rmsk exon 65698231 65698495 571 - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2584"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "159"; repStart "-9"; chr18 rmsk exon 65699015 65699132 314 - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2584"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "5011"; repStart "-93"; chr18 rmsk exon 65699274 65699415 361 - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2584"; repClass "LTR"; repEnd "4574"; repFamily "ERVL"; repLeft "4427"; repStart "-652"; chr18 rmsk exon 65699572 65699894 439 - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2584"; repClass "LTR"; repEnd "4282"; repFamily "ERVL"; repLeft "3988"; repStart "-944"; chr18 rmsk exon 65700073 65700560 707 - . gene_id "ERV316A3_18q22.1h"; transcript_id "ERV316A3_18q22.1h"; locus "ERV316A3_18q22.1h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2584"; repClass "LTR"; repEnd "4174"; repFamily "ERVL"; repLeft "3676"; repStart "-1052"; ### ERVL_18q22.1b ### chr18 rmsk gene 66025413 66027449 . - . gene_id "ERVL_18q22.1b"; transcript_id "ERVL_18q22.1b"; locus "ERVL_18q22.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0431"; model_cov "1080"; model_pct "18.8"; chr18 rmsk exon 66025413 66025474 1717 - . gene_id "ERVL_18q22.1b"; transcript_id "ERVL_18q22.1b"; locus "ERVL_18q22.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0431"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "465"; repStart "0"; chr18 rmsk exon 66025527 66025986 1717 - . gene_id "ERVL_18q22.1b"; transcript_id "ERVL_18q22.1b"; locus "ERVL_18q22.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0431"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "1"; repStart "-56"; chr18 rmsk exon 66025987 66026195 5107 - . gene_id "ERVL_18q22.1b"; transcript_id "ERVL_18q22.1b"; locus "ERVL_18q22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0431"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5547"; repStart "0"; chr18 rmsk exon 66026614 66027449 5107 - . gene_id "ERVL_18q22.1b"; transcript_id "ERVL_18q22.1b"; locus "ERVL_18q22.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0431"; repClass "LTR"; repEnd "5546"; repFamily "ERVL"; repLeft "4676"; repStart "-211"; ### ERV316A3_18q22.1i ### chr18 rmsk gene 66086511 66087985 . + . gene_id "ERV316A3_18q22.1i"; transcript_id "ERV316A3_18q22.1i"; locus "ERV316A3_18q22.1i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2586"; model_cov "830"; model_pct "15.9"; chr18 rmsk exon 66086511 66086679 484 + . gene_id "ERV316A3_18q22.1i"; transcript_id "ERV316A3_18q22.1i"; locus "ERV316A3_18q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2586"; repClass "LTR"; repEnd "4245"; repFamily "ERVL"; repLeft "-981"; repStart "4077"; chr18 rmsk exon 66086915 66087172 397 + . gene_id "ERV316A3_18q22.1i"; transcript_id "ERV316A3_18q22.1i"; locus "ERV316A3_18q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2586"; repClass "LTR"; repEnd "4809"; repFamily "ERVL"; repLeft "-417"; repStart "4472"; chr18 rmsk exon 66087208 66087532 761 + . gene_id "ERV316A3_18q22.1i"; transcript_id "ERV316A3_18q22.1i"; locus "ERV316A3_18q22.1i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2586"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4901"; chr18 rmsk exon 66087533 66087985 1111 + . gene_id "ERV316A3_18q22.1i"; transcript_id "ERV316A3_18q22.1i"; locus "ERV316A3_18q22.1i"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2586"; repClass "LTR"; repEnd "476"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### ERVLE_18q22.1e ### chr18 rmsk gene 66127868 66129754 . + . gene_id "ERVLE_18q22.1e"; transcript_id "ERVLE_18q22.1e"; locus "ERVLE_18q22.1e"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3391"; model_cov "1067"; model_pct "18.8"; chr18 rmsk exon 66127868 66128164 516 + . gene_id "ERVLE_18q22.1e"; transcript_id "ERVLE_18q22.1e"; locus "ERVLE_18q22.1e"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3391"; repClass "LTR"; repEnd "595"; repFamily "ERVL"; repLeft "-68"; repStart "264"; chr18 rmsk exon 66128228 66128744 1549 + . gene_id "ERVLE_18q22.1e"; transcript_id "ERVLE_18q22.1e"; locus "ERVLE_18q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3391"; repClass "LTR"; repEnd "3724"; repFamily "ERVL"; repLeft "-1943"; repStart "3169"; chr18 rmsk exon 66129241 66129467 873 + . gene_id "ERVLE_18q22.1e"; transcript_id "ERVLE_18q22.1e"; locus "ERVLE_18q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3391"; repClass "LTR"; repEnd "4088"; repFamily "ERVL"; repLeft "-1579"; repStart "3857"; chr18 rmsk exon 66129479 66129754 857 + . gene_id "ERVLE_18q22.1e"; transcript_id "ERVLE_18q22.1e"; locus "ERVLE_18q22.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3391"; repClass "LTR"; repEnd "4417"; repFamily "ERVL"; repLeft "-1250"; repStart "4136"; ### ERVL_18q22.1c ### chr18 rmsk gene 66130375 66131842 . + . gene_id "ERVL_18q22.1c"; transcript_id "ERVL_18q22.1c"; locus "ERVL_18q22.1c"; category "unknown"; intModel "ERVL-int"; locid "ERVL-int_0432"; model_cov "819"; model_pct "14.2"; chr18 rmsk exon 66130375 66130623 375 + . gene_id "ERVL_18q22.1c"; transcript_id "ERVL_18q22.1c"; locus "ERVL_18q22.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0432"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "-3924"; repStart "1589"; chr18 rmsk exon 66130725 66130805 783 + . gene_id "ERVL_18q22.1c"; transcript_id "ERVL_18q22.1c"; locus "ERVL_18q22.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0432"; repClass "LTR"; repEnd "2076"; repFamily "ERVL"; repLeft "-3681"; repStart "1992"; chr18 rmsk exon 66130806 66131362 1973 + . gene_id "ERVL_18q22.1c"; transcript_id "ERVL_18q22.1c"; locus "ERVL_18q22.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0432"; repClass "LTR"; repEnd "553"; repFamily "ERVL"; repLeft "-1"; repStart "1"; chr18 rmsk exon 66131363 66131842 783 + . gene_id "ERVL_18q22.1c"; transcript_id "ERVL_18q22.1c"; locus "ERVL_18q22.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0432"; repClass "LTR"; repEnd "2568"; repFamily "ERVL"; repLeft "-3189"; repStart "2077"; ### ERV316A3_18q22.1j ### chr18 rmsk gene 66132832 66134214 . + . gene_id "ERV316A3_18q22.1j"; transcript_id "ERV316A3_18q22.1j"; locus "ERV316A3_18q22.1j"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2587"; model_cov "1338"; model_pct "25.6"; chr18 rmsk exon 66132832 66133253 787 + . gene_id "ERV316A3_18q22.1j"; transcript_id "ERV316A3_18q22.1j"; locus "ERV316A3_18q22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2587"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "1984"; chr18 rmsk exon 66133286 66134214 789 + . gene_id "ERV316A3_18q22.1j"; transcript_id "ERV316A3_18q22.1j"; locus "ERV316A3_18q22.1j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2587"; repClass "LTR"; repEnd "3492"; repFamily "ERVL"; repLeft "-1734"; repStart "2581"; ### ERVLB4_18q22.1b ### chr18 rmsk gene 66168724 66171609 . - . gene_id "ERVLB4_18q22.1b"; transcript_id "ERVLB4_18q22.1b"; locus "ERVLB4_18q22.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1633"; model_cov "2860"; model_pct "50.1"; chr18 rmsk exon 66168724 66169466 3781 - . gene_id "ERVLB4_18q22.1b"; transcript_id "ERVLB4_18q22.1b"; locus "ERVLB4_18q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1633"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "3830"; repStart "-1128"; chr18 rmsk exon 66169541 66169775 1113 - . gene_id "ERVLB4_18q22.1b"; transcript_id "ERVLB4_18q22.1b"; locus "ERVLB4_18q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1633"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "3595"; repStart "-1879"; chr18 rmsk exon 66169766 66170666 4547 - . gene_id "ERVLB4_18q22.1b"; transcript_id "ERVLB4_18q22.1b"; locus "ERVLB4_18q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1633"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "2192"; repStart "-2592"; chr18 rmsk exon 66170706 66171609 3310 - . gene_id "ERVLB4_18q22.1b"; transcript_id "ERVLB4_18q22.1b"; locus "ERVLB4_18q22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1633"; repClass "LTR"; repEnd "1836"; repFamily "ERVL"; repLeft "902"; repStart "-3878"; ### ERVLB4_18q22.1c ### chr18 rmsk gene 66231725 66237745 . + . gene_id "ERVLB4_18q22.1c"; transcript_id "ERVLB4_18q22.1c"; locus "ERVLB4_18q22.1c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1634"; model_cov "5488"; model_pct "96.0"; chr18 rmsk exon 66231725 66232253 2017 + . gene_id "ERVLB4_18q22.1c"; transcript_id "ERVLB4_18q22.1c"; locus "ERVLB4_18q22.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1634"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-34"; repStart "3"; chr18 rmsk exon 66232256 66237683 29391 + . gene_id "ERVLB4_18q22.1c"; transcript_id "ERVLB4_18q22.1c"; locus "ERVLB4_18q22.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1634"; repClass "LTR"; repEnd "5495"; repFamily "ERVL"; repLeft "-219"; repStart "7"; chr18 rmsk exon 66237687 66237745 321 + . gene_id "ERVLB4_18q22.1c"; transcript_id "ERVLB4_18q22.1c"; locus "ERVLB4_18q22.1c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1634"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "493"; ### ERV316A3_18q22.1k ### chr18 rmsk gene 66249514 66252963 . - . gene_id "ERV316A3_18q22.1k"; transcript_id "ERV316A3_18q22.1k"; locus "ERV316A3_18q22.1k"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2588"; model_cov "2721"; model_pct "52.1"; chr18 rmsk exon 66249514 66250248 1232 - . gene_id "ERV316A3_18q22.1k"; transcript_id "ERV316A3_18q22.1k"; locus "ERV316A3_18q22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2588"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "2557"; repStart "-1925"; chr18 rmsk exon 66250524 66252489 1837 - . gene_id "ERV316A3_18q22.1k"; transcript_id "ERV316A3_18q22.1k"; locus "ERV316A3_18q22.1k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2588"; repClass "LTR"; repEnd "2176"; repFamily "ERVL"; repLeft "199"; repStart "-3050"; chr18 rmsk exon 66252570 66252963 547 - . gene_id "ERV316A3_18q22.1k"; transcript_id "ERV316A3_18q22.1k"; locus "ERV316A3_18q22.1k"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2588"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "37"; repStart "-4"; ### HERVL_18q22.1b ### chr18 rmsk gene 66371739 66377704 . + . gene_id "HERVL_18q22.1b"; transcript_id "HERVL_18q22.1b"; locus "HERVL_18q22.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1189"; model_cov "5526"; model_pct "97.7"; chr18 rmsk exon 66371739 66372192 2954 + . gene_id "HERVL_18q22.1b"; transcript_id "HERVL_18q22.1b"; locus "HERVL_18q22.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1189"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "5"; chr18 rmsk exon 66372193 66377172 40975 + . gene_id "HERVL_18q22.1b"; transcript_id "HERVL_18q22.1b"; locus "HERVL_18q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1189"; repClass "LTR"; repEnd "5026"; repFamily "ERVL"; repLeft "-628"; repStart "1"; chr18 rmsk exon 66377209 66377704 40975 + . gene_id "HERVL_18q22.1b"; transcript_id "HERVL_18q22.1b"; locus "HERVL_18q22.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1189"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "-126"; repStart "5027"; ### ERVLB4_18q22.1d ### chr18 rmsk gene 66448717 66450143 . - . gene_id "ERVLB4_18q22.1d"; transcript_id "ERVLB4_18q22.1d"; locus "ERVLB4_18q22.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1635"; model_cov "664"; model_pct "11.6"; chr18 rmsk exon 66448717 66449041 753 - . gene_id "ERVLB4_18q22.1d"; transcript_id "ERVLB4_18q22.1d"; locus "ERVLB4_18q22.1d"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1635"; repClass "LTR"; repEnd "333"; repFamily "ERVL"; repLeft "19"; repStart "-64"; chr18 rmsk exon 66449063 66449609 1853 - . gene_id "ERVLB4_18q22.1d"; transcript_id "ERVLB4_18q22.1d"; locus "ERVLB4_18q22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1635"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "5103"; repStart "-4"; chr18 rmsk exon 66450078 66450143 283 - . gene_id "ERVLB4_18q22.1d"; transcript_id "ERVLB4_18q22.1d"; locus "ERVLB4_18q22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1635"; repClass "LTR"; repEnd "5113"; repFamily "ERVL"; repLeft "5056"; repStart "-601"; ### ERVLB4_18q22.1e ### chr18 rmsk gene 66450239 66455294 . - . gene_id "ERVLB4_18q22.1e"; transcript_id "ERVLB4_18q22.1e"; locus "ERVLB4_18q22.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1638"; model_cov "4376"; model_pct "76.6"; chr18 rmsk exon 66450239 66452072 5273 - . gene_id "ERVLB4_18q22.1e"; transcript_id "ERVLB4_18q22.1e"; locus "ERVLB4_18q22.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1638"; repClass "LTR"; repEnd "5117"; repFamily "ERVL"; repLeft "3165"; repStart "-597"; chr18 rmsk exon 66452267 66452336 256 - . gene_id "ERVLB4_18q22.1e"; transcript_id "ERVLB4_18q22.1e"; locus "ERVLB4_18q22.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1638"; repClass "LTR"; repEnd "3001"; repFamily "ERVL"; repLeft "2937"; repStart "-2713"; chr18 rmsk exon 66452337 66453750 5572 - . gene_id "ERVLB4_18q22.1e"; transcript_id "ERVLB4_18q22.1e"; locus "ERVLB4_18q22.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1638"; repClass "LTR"; repEnd "2739"; repFamily "ERVL"; repLeft "1261"; repStart "-2975"; chr18 rmsk exon 66454436 66455294 2402 - . gene_id "ERVLB4_18q22.1e"; transcript_id "ERVLB4_18q22.1e"; locus "ERVLB4_18q22.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1638"; repClass "LTR"; repEnd "985"; repFamily "ERVL"; repLeft "103"; repStart "-4729"; ### MER41_18q22.1a ### chr18 rmsk gene 66686731 66688380 . + . gene_id "MER41_18q22.1a"; transcript_id "MER41_18q22.1a"; locus "MER41_18q22.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0505"; model_cov "1018"; model_pct "17.1"; chr18 rmsk exon 66686731 66686781 279 + . gene_id "MER41_18q22.1a"; transcript_id "MER41_18q22.1a"; locus "MER41_18q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0505"; repClass "LTR"; repEnd "-891"; repFamily "ERV1"; repLeft "-6837"; repStart "-941"; chr18 rmsk exon 66687187 66687396 763 + . gene_id "MER41_18q22.1a"; transcript_id "MER41_18q22.1a"; locus "MER41_18q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0505"; repClass "LTR"; repEnd "1204"; repFamily "ERV1"; repLeft "-4742"; repStart "995"; chr18 rmsk exon 66687402 66688380 4014 + . gene_id "MER41_18q22.1a"; transcript_id "MER41_18q22.1a"; locus "MER41_18q22.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0505"; repClass "LTR"; repEnd "5556"; repFamily "ERV1"; repLeft "-390"; repStart "4797"; ### MER41_18q22.1b ### chr18 rmsk gene 66688675 66692387 . + . gene_id "MER41_18q22.1b"; transcript_id "MER41_18q22.1b"; locus "MER41_18q22.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0506"; model_cov "4585"; model_pct "77.1"; chr18 rmsk exon 66688675 66688751 432 + . gene_id "MER41_18q22.1b"; transcript_id "MER41_18q22.1b"; locus "MER41_18q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0506"; repClass "LTR"; repEnd "967"; repFamily "ERV1"; repLeft "-4979"; repStart "891"; chr18 rmsk exon 66688749 66692387 13005 + . gene_id "MER41_18q22.1b"; transcript_id "MER41_18q22.1b"; locus "MER41_18q22.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0506"; repClass "LTR"; repEnd "5884"; repFamily "ERV1"; repLeft "-62"; repStart "1375"; ### MER4B_18q22.1a ### chr18 rmsk gene 66886349 66892354 . - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0439"; model_cov "4631"; model_pct "68.5"; chr18 rmsk exon 66886349 66887005 3028 - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0439"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-289"; repStart "-1"; chr18 rmsk exon 66887006 66887407 2173 - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0439"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6352"; repStart "0"; chr18 rmsk exon 66887481 66889655 12507 - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0439"; repClass "LTR"; repEnd "6331"; repFamily "ERV1"; repLeft "4177"; repStart "-427"; chr18 rmsk exon 66890037 66892020 12423 - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0439"; repClass "LTR"; repEnd "3131"; repFamily "ERV1"; repLeft "1060"; repStart "-3627"; chr18 rmsk exon 66892332 66892354 12423 - . gene_id "MER4B_18q22.1a"; transcript_id "MER4B_18q22.1a"; locus "MER4B_18q22.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0439"; repClass "LTR"; repEnd "1059"; repFamily "ERV1"; repLeft "1059"; repStart "-5699"; ### MER4B_18q22.1b ### chr18 rmsk gene 66892669 66894360 . - . gene_id "MER4B_18q22.1b"; transcript_id "MER4B_18q22.1b"; locus "MER4B_18q22.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0440"; model_cov "1099"; model_pct "16.3"; chr18 rmsk exon 66892669 66892756 12423 - . gene_id "MER4B_18q22.1b"; transcript_id "MER4B_18q22.1b"; locus "MER4B_18q22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0440"; repClass "LTR"; repEnd "1059"; repFamily "ERV1"; repLeft "994"; repStart "-5699"; chr18 rmsk exon 66892793 66893555 12423 - . gene_id "MER4B_18q22.1b"; transcript_id "MER4B_18q22.1b"; locus "MER4B_18q22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0440"; repClass "LTR"; repEnd "993"; repFamily "ERV1"; repLeft "243"; repStart "-5765"; chr18 rmsk exon 66893603 66893915 1498 - . gene_id "MER4B_18q22.1b"; transcript_id "MER4B_18q22.1b"; locus "MER4B_18q22.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0440"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "1"; repStart "-6473"; chr18 rmsk exon 66893916 66894360 2711 - . gene_id "MER4B_18q22.1b"; transcript_id "MER4B_18q22.1b"; locus "MER4B_18q22.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0440"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "155"; repStart "0"; ### ERVLB4_18q22.1f ### chr18 rmsk gene 66900962 66903062 . - . gene_id "ERVLB4_18q22.1f"; transcript_id "ERVLB4_18q22.1f"; locus "ERVLB4_18q22.1f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1639"; model_cov "1045"; model_pct "18.3"; chr18 rmsk exon 66900962 66901251 571 - . gene_id "ERVLB4_18q22.1f"; transcript_id "ERVLB4_18q22.1f"; locus "ERVLB4_18q22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1639"; repClass "LTR"; repEnd "3170"; repFamily "ERVL"; repLeft "2880"; repStart "-2544"; chr18 rmsk exon 66901311 66901893 347 - . gene_id "ERVLB4_18q22.1f"; transcript_id "ERVLB4_18q22.1f"; locus "ERVLB4_18q22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1639"; repClass "LTR"; repEnd "3054"; repFamily "ERVL"; repLeft "2495"; repStart "-2660"; chr18 rmsk exon 66902878 66903062 279 - . gene_id "ERVLB4_18q22.1f"; transcript_id "ERVLB4_18q22.1f"; locus "ERVLB4_18q22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1639"; repClass "LTR"; repEnd "1655"; repFamily "ERVL"; repLeft "1459"; repStart "-4059"; ### HERVL40_18q22.1c ### chr18 rmsk gene 66991379 66995081 . + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0413"; model_cov "2304"; model_pct "41.7"; chr18 rmsk exon 66991379 66991496 308 + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0413"; repClass "LTR"; repEnd "2913"; repFamily "ERVL"; repLeft "-2617"; repStart "2791"; chr18 rmsk exon 66992392 66993708 3052 + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0413"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "-957"; repStart "3204"; chr18 rmsk exon 66993747 66993852 1505 + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0413"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "-747"; repStart "4678"; chr18 rmsk exon 66993906 66994637 1505 + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0413"; repClass "LTR"; repEnd "5492"; repFamily "ERVL"; repLeft "-38"; repStart "4784"; chr18 rmsk exon 66994675 66995081 731 + . gene_id "HERVL40_18q22.1c"; transcript_id "HERVL40_18q22.1c"; locus "HERVL40_18q22.1c"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0413"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-37"; repStart "3"; ### HERVL18_18q22.1 ### chr18 rmsk gene 67298121 67301059 . + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0141"; model_cov "2454"; model_pct "40.6"; chr18 rmsk exon 67298121 67298460 2323 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "1809"; repFamily "ERVL"; repLeft "-4238"; repStart "1468"; chr18 rmsk exon 67298462 67299924 9613 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2120"; chr18 rmsk exon 67299927 67300216 1750 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "-1370"; repStart "4394"; chr18 rmsk exon 67300217 67300487 1593 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "5267"; repFamily "ERVL"; repLeft "-780"; repStart "4996"; chr18 rmsk exon 67300489 67300589 592 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "5947"; chr18 rmsk exon 67300591 67300782 831 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-421"; repStart "1"; chr18 rmsk exon 67300938 67301059 745 + . gene_id "HERVL18_18q22.1"; transcript_id "HERVL18_18q22.1"; locus "HERVL18_18q22.1"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0141"; repClass "LTR"; repEnd "613"; repFamily "ERVL"; repLeft "-1"; repStart "492"; ### PABLB_18q22.1 ### chr18 rmsk gene 67333336 67336864 . + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0097"; model_cov "2384"; model_pct "33.5"; chr18 rmsk exon 67333336 67333521 530 + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0097"; repClass "LTR"; repEnd "1562"; repFamily "ERV1"; repLeft "-5560"; repStart "1360"; chr18 rmsk exon 67333821 67334311 530 + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0097"; repClass "LTR"; repEnd "2023"; repFamily "ERV1"; repLeft "-5099"; repStart "1563"; chr18 rmsk exon 67334323 67334753 1777 + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0097"; repClass "LTR"; repEnd "3199"; repFamily "ERV1"; repLeft "-3923"; repStart "2782"; chr18 rmsk exon 67335063 67335988 1777 + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0097"; repClass "LTR"; repEnd "4130"; repFamily "ERV1"; repLeft "-2992"; repStart "3200"; chr18 rmsk exon 67336158 67336864 745 + . gene_id "PABLB_18q22.1"; transcript_id "PABLB_18q22.1"; locus "PABLB_18q22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0097"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "-1964"; repStart "4783"; ### HERVL40_18q22.1d ### chr18 rmsk gene 67425730 67427733 . + . gene_id "HERVL40_18q22.1d"; transcript_id "HERVL40_18q22.1d"; locus "HERVL40_18q22.1d"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0414"; model_cov "1440"; model_pct "26.0"; chr18 rmsk exon 67425730 67426113 1150 + . gene_id "HERVL40_18q22.1d"; transcript_id "HERVL40_18q22.1d"; locus "HERVL40_18q22.1d"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0414"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "111"; chr18 rmsk exon 67426115 67426683 1290 + . gene_id "HERVL40_18q22.1d"; transcript_id "HERVL40_18q22.1d"; locus "HERVL40_18q22.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0414"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "-4959"; repStart "1"; chr18 rmsk exon 67426773 67426838 260 + . gene_id "HERVL40_18q22.1d"; transcript_id "HERVL40_18q22.1d"; locus "HERVL40_18q22.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0414"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "-4867"; repStart "598"; chr18 rmsk exon 67426923 67427733 1400 + . gene_id "HERVL40_18q22.1d"; transcript_id "HERVL40_18q22.1d"; locus "HERVL40_18q22.1d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0414"; repClass "LTR"; repEnd "1557"; repFamily "ERVL"; repLeft "-3973"; repStart "752"; ### ERVL_18q22.1d ### chr18 rmsk gene 68232715 68234611 . - . gene_id "ERVL_18q22.1d"; transcript_id "ERVL_18q22.1d"; locus "ERVL_18q22.1d"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0433"; model_cov "1589"; model_pct "27.6"; chr18 rmsk exon 68232715 68233900 759 - . gene_id "ERVL_18q22.1d"; transcript_id "ERVL_18q22.1d"; locus "ERVL_18q22.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0433"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "1246"; repStart "-3090"; chr18 rmsk exon 68234439 68234611 289 - . gene_id "ERVL_18q22.1d"; transcript_id "ERVL_18q22.1d"; locus "ERVL_18q22.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0433"; repClass "LTR"; repEnd "1291"; repFamily "ERVL"; repLeft "1123"; repStart "-4466"; ### ERV316A3_18q22.1l ### chr18 rmsk gene 68309059 68312630 . - . gene_id "ERV316A3_18q22.1l"; transcript_id "ERV316A3_18q22.1l"; locus "ERV316A3_18q22.1l"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2593"; model_cov "1844"; model_pct "35.3"; chr18 rmsk exon 68309059 68309369 849 - . gene_id "ERV316A3_18q22.1l"; transcript_id "ERV316A3_18q22.1l"; locus "ERV316A3_18q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2593"; repClass "LTR"; repEnd "3221"; repFamily "ERVL"; repLeft "2898"; repStart "-2005"; chr18 rmsk exon 68310078 68310384 615 - . gene_id "ERV316A3_18q22.1l"; transcript_id "ERV316A3_18q22.1l"; locus "ERV316A3_18q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2593"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "2184"; repStart "-2732"; chr18 rmsk exon 68310589 68311783 1357 - . gene_id "ERV316A3_18q22.1l"; transcript_id "ERV316A3_18q22.1l"; locus "ERV316A3_18q22.1l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2593"; repClass "LTR"; repEnd "1932"; repFamily "ERVL"; repLeft "721"; repStart "-3294"; chr18 rmsk exon 68312227 68312630 1149 - . gene_id "ERV316A3_18q22.1l"; transcript_id "ERV316A3_18q22.1l"; locus "ERV316A3_18q22.1l"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2593"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "37"; repStart "0"; ### MER41_18q22.1c ### chr18 rmsk gene 68359496 68362525 . + . gene_id "MER41_18q22.1c"; transcript_id "MER41_18q22.1c"; locus "MER41_18q22.1c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0507"; model_cov "5250"; model_pct "88.3"; chr18 rmsk exon 68359496 68362525 11366 + . gene_id "MER41_18q22.1c"; transcript_id "MER41_18q22.1c"; locus "MER41_18q22.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0507"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "695"; ### ERV316A3_18q22.1m ### chr18 rmsk gene 68446744 68450909 . - . gene_id "ERV316A3_18q22.1m"; transcript_id "ERV316A3_18q22.1m"; locus "ERV316A3_18q22.1m"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2594"; model_cov "2269"; model_pct "43.4"; chr18 rmsk exon 68446744 68448255 3805 - . gene_id "ERV316A3_18q22.1m"; transcript_id "ERV316A3_18q22.1m"; locus "ERV316A3_18q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2594"; repClass "LTR"; repEnd "3083"; repFamily "ERVL"; repLeft "1618"; repStart "-2143"; chr18 rmsk exon 68449481 68449757 749 - . gene_id "ERV316A3_18q22.1m"; transcript_id "ERV316A3_18q22.1m"; locus "ERV316A3_18q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2594"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "734"; repStart "-4188"; chr18 rmsk exon 68449834 68450351 711 - . gene_id "ERV316A3_18q22.1m"; transcript_id "ERV316A3_18q22.1m"; locus "ERV316A3_18q22.1m"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2594"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "101"; repStart "-4625"; chr18 rmsk exon 68450455 68450909 1056 - . gene_id "ERV316A3_18q22.1m"; transcript_id "ERV316A3_18q22.1m"; locus "ERV316A3_18q22.1m"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2594"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "1"; repStart "-8"; ### ERV316A3_18q22.1n ### chr18 rmsk gene 68558277 68560715 . + . gene_id "ERV316A3_18q22.1n"; transcript_id "ERV316A3_18q22.1n"; locus "ERV316A3_18q22.1n"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2595"; model_cov "1117"; model_pct "21.4"; chr18 rmsk exon 68558277 68558486 288 + . gene_id "ERV316A3_18q22.1n"; transcript_id "ERV316A3_18q22.1n"; locus "ERV316A3_18q22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2595"; repClass "LTR"; repEnd "878"; repFamily "ERVL"; repLeft "-4348"; repStart "666"; chr18 rmsk exon 68559812 68560483 814 + . gene_id "ERV316A3_18q22.1n"; transcript_id "ERV316A3_18q22.1n"; locus "ERV316A3_18q22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2595"; repClass "LTR"; repEnd "1958"; repFamily "ERVL"; repLeft "-3268"; repStart "1286"; chr18 rmsk exon 68560491 68560715 582 + . gene_id "ERV316A3_18q22.1n"; transcript_id "ERV316A3_18q22.1n"; locus "ERV316A3_18q22.1n"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2595"; repClass "LTR"; repEnd "2599"; repFamily "ERVL"; repLeft "-2627"; repStart "2366"; ### ERVLE_18q22.1f ### chr18 rmsk gene 68656500 68664413 . + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3400"; model_cov "3744"; model_pct "66.1"; chr18 rmsk exon 68656500 68657036 948 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "606"; repFamily "ERVL"; repLeft "-57"; repStart "1"; chr18 rmsk exon 68657400 68657475 948 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "607"; chr18 rmsk exon 68657480 68657793 848 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "321"; repFamily "ERVL"; repLeft "-5346"; repStart "5"; chr18 rmsk exon 68657798 68658015 693 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "724"; repFamily "ERVL"; repLeft "-4943"; repStart "508"; chr18 rmsk exon 68658627 68658856 832 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "1434"; repFamily "ERVL"; repLeft "-4233"; repStart "1184"; chr18 rmsk exon 68659479 68660377 2482 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "2491"; repFamily "ERVL"; repLeft "-3176"; repStart "1557"; chr18 rmsk exon 68661387 68661453 309 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "2618"; repFamily "ERVL"; repLeft "-3049"; repStart "2548"; chr18 rmsk exon 68661547 68661674 3359 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "-2987"; repStart "2551"; chr18 rmsk exon 68662072 68662928 3359 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "3572"; repFamily "ERVL"; repLeft "-2095"; repStart "2681"; chr18 rmsk exon 68662965 68663867 3118 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "5405"; repFamily "ERVL"; repLeft "-262"; repStart "4467"; chr18 rmsk exon 68663983 68664243 354 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "-327"; repStart "5"; chr18 rmsk exon 68664323 68664413 397 + . gene_id "ERVLE_18q22.1f"; transcript_id "ERVLE_18q22.1f"; locus "ERVLE_18q22.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3400"; repClass "LTR"; repEnd "604"; repFamily "ERVL"; repLeft "-59"; repStart "514"; ### ERV316A3_18q22.1o ### chr18 rmsk gene 68737017 68739972 . - . gene_id "ERV316A3_18q22.1o"; transcript_id "ERV316A3_18q22.1o"; locus "ERV316A3_18q22.1o"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2596"; model_cov "2144"; model_pct "41.0"; chr18 rmsk exon 68737017 68737172 349 - . gene_id "ERV316A3_18q22.1o"; transcript_id "ERV316A3_18q22.1o"; locus "ERV316A3_18q22.1o"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2596"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "81"; repStart "-225"; chr18 rmsk exon 68737556 68738993 2289 - . gene_id "ERV316A3_18q22.1o"; transcript_id "ERV316A3_18q22.1o"; locus "ERV316A3_18q22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2596"; repClass "LTR"; repEnd "4966"; repFamily "ERVL"; repLeft "3504"; repStart "-260"; chr18 rmsk exon 68739292 68739972 2289 - . gene_id "ERV316A3_18q22.1o"; transcript_id "ERV316A3_18q22.1o"; locus "ERV316A3_18q22.1o"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2596"; repClass "LTR"; repEnd "3503"; repFamily "ERVL"; repLeft "2821"; repStart "-1723"; ### HERVL40_18q22.1e ### chr18 rmsk gene 68921962 68922547 . - . gene_id "HERVL40_18q22.1e"; transcript_id "HERVL40_18q22.1e"; locus "HERVL40_18q22.1e"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0417"; model_cov "583"; model_pct "10.5"; chr18 rmsk exon 68921962 68922547 861 - . gene_id "HERVL40_18q22.1e"; transcript_id "HERVL40_18q22.1e"; locus "HERVL40_18q22.1e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0417"; repClass "LTR"; repEnd "5442"; repFamily "ERVL"; repLeft "4859"; repStart "-88"; ### ERVLB4_18q22.2 ### chr18 rmsk gene 69339605 69340650 . + . gene_id "ERVLB4_18q22.2"; transcript_id "ERVLB4_18q22.2"; locus "ERVLB4_18q22.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1642"; model_cov "1098"; model_pct "19.2"; chr18 rmsk exon 69339605 69340396 1653 + . gene_id "ERVLB4_18q22.2"; transcript_id "ERVLB4_18q22.2"; locus "ERVLB4_18q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1642"; repClass "LTR"; repEnd "5027"; repFamily "ERVL"; repLeft "-687"; repStart "4192"; chr18 rmsk exon 69340420 69340650 403 + . gene_id "ERVLB4_18q22.2"; transcript_id "ERVLB4_18q22.2"; locus "ERVLB4_18q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1642"; repClass "LTR"; repEnd "5376"; repFamily "ERVL"; repLeft "-338"; repStart "5113"; ### ERVLE_18q22.2a ### chr18 rmsk gene 69635720 69636604 . + . gene_id "ERVLE_18q22.2a"; transcript_id "ERVLE_18q22.2a"; locus "ERVLE_18q22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3402"; model_cov "898"; model_pct "15.8"; chr18 rmsk exon 69635720 69636604 1618 + . gene_id "ERVLE_18q22.2a"; transcript_id "ERVLE_18q22.2a"; locus "ERVLE_18q22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3402"; repClass "LTR"; repEnd "3700"; repFamily "ERVL"; repLeft "-1967"; repStart "2802"; ### HERVL_18q22.2a ### chr18 rmsk gene 69972817 69978822 . - . gene_id "HERVL_18q22.2a"; transcript_id "HERVL_18q22.2a"; locus "HERVL_18q22.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1191"; model_cov "5375"; model_pct "95.1"; chr18 rmsk exon 69972817 69973063 1880 - . gene_id "HERVL_18q22.2a"; transcript_id "HERVL_18q22.2a"; locus "HERVL_18q22.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1191"; repClass "LTR"; repEnd "253"; repFamily "ERVL"; repLeft "1"; repStart "-191"; chr18 rmsk exon 69973064 69976589 28301 - . gene_id "HERVL_18q22.2a"; transcript_id "HERVL_18q22.2a"; locus "HERVL_18q22.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1191"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2048"; repStart "0"; chr18 rmsk exon 69976588 69978308 13521 - . gene_id "HERVL_18q22.2a"; transcript_id "HERVL_18q22.2a"; locus "HERVL_18q22.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1191"; repClass "LTR"; repEnd "1875"; repFamily "ERVL"; repLeft "106"; repStart "-3779"; chr18 rmsk exon 69978416 69978822 2890 - . gene_id "HERVL_18q22.2a"; transcript_id "HERVL_18q22.2a"; locus "HERVL_18q22.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1191"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-110"; repStart "-53"; ### ERVL_18q22.2 ### chr18 rmsk gene 70619884 70620626 . - . gene_id "ERVL_18q22.2"; transcript_id "ERVL_18q22.2"; locus "ERVL_18q22.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0434"; model_cov "770"; model_pct "13.4"; chr18 rmsk exon 70619884 70620626 1438 - . gene_id "ERVL_18q22.2"; transcript_id "ERVL_18q22.2"; locus "ERVL_18q22.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0434"; repClass "LTR"; repEnd "2435"; repFamily "ERVL"; repLeft "1665"; repStart "-3322"; ### HERVL_18q22.2b ### chr18 rmsk gene 70891022 70891600 . - . gene_id "HERVL_18q22.2b"; transcript_id "HERVL_18q22.2b"; locus "HERVL_18q22.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1192"; model_cov "582"; model_pct "10.3"; chr18 rmsk exon 70891022 70891600 930 - . gene_id "HERVL_18q22.2b"; transcript_id "HERVL_18q22.2b"; locus "HERVL_18q22.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1192"; repClass "LTR"; repEnd "2386"; repFamily "ERVL"; repLeft "1804"; repStart "-3268"; ### ERVLE_18q22.2b ### chr18 rmsk gene 70982230 70984417 . + . gene_id "ERVLE_18q22.2b"; transcript_id "ERVLE_18q22.2b"; locus "ERVLE_18q22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3403"; model_cov "1445"; model_pct "25.5"; chr18 rmsk exon 70982230 70982964 1654 + . gene_id "ERVLE_18q22.2b"; transcript_id "ERVLE_18q22.2b"; locus "ERVLE_18q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3403"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "-2811"; repStart "2085"; chr18 rmsk exon 70983178 70983248 290 + . gene_id "ERVLE_18q22.2b"; transcript_id "ERVLE_18q22.2b"; locus "ERVLE_18q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3403"; repClass "LTR"; repEnd "3323"; repFamily "ERVL"; repLeft "-2344"; repStart "3253"; chr18 rmsk exon 70983757 70983859 393 + . gene_id "ERVLE_18q22.2b"; transcript_id "ERVLE_18q22.2b"; locus "ERVLE_18q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3403"; repClass "LTR"; repEnd "3474"; repFamily "ERVL"; repLeft "-2193"; repStart "3374"; chr18 rmsk exon 70983928 70984417 780 + . gene_id "ERVLE_18q22.2b"; transcript_id "ERVLE_18q22.2b"; locus "ERVLE_18q22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3403"; repClass "LTR"; repEnd "4115"; repFamily "ERVL"; repLeft "-1552"; repStart "3611"; ### ERVLE_18q22.3a ### chr18 rmsk gene 71021775 71026989 . + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3405"; model_cov "2288"; model_pct "40.4"; chr18 rmsk exon 71021775 71022093 251 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "-4356"; repStart "995"; chr18 rmsk exon 71022233 71022353 401 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "-4280"; repStart "1262"; chr18 rmsk exon 71022800 71023800 1773 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "-3693"; repStart "947"; chr18 rmsk exon 71024140 71024322 1773 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "2163"; repFamily "ERVL"; repLeft "-3504"; repStart "1975"; chr18 rmsk exon 71025955 71026021 1329 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "-3295"; repStart "2307"; chr18 rmsk exon 71026443 71026989 1329 + . gene_id "ERVLE_18q22.3a"; transcript_id "ERVLE_18q22.3a"; locus "ERVLE_18q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3405"; repClass "LTR"; repEnd "2940"; repFamily "ERVL"; repLeft "-2727"; repStart "2373"; ### ERVLE_18q22.3b ### chr18 rmsk gene 71199087 71201446 . - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; category "prototype"; intModel "ERVL-E-int"; locid "ERVL-E-int_3407"; model_cov "1327"; model_pct "23.4"; chr18 rmsk exon 71199087 71199547 1027 - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3407"; repClass "LTR"; repEnd "655"; repFamily "ERVL"; repLeft "191"; repStart "-8"; chr18 rmsk exon 71199617 71200405 3502 - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3407"; repClass "LTR"; repEnd "4754"; repFamily "ERVL"; repLeft "3986"; repStart "-913"; chr18 rmsk exon 71200704 71201128 3502 - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3407"; repClass "LTR"; repEnd "3985"; repFamily "ERVL"; repLeft "3540"; repStart "-1682"; chr18 rmsk exon 71201150 71201261 382 - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3407"; repClass "LTR"; repEnd "3490"; repFamily "ERVL"; repLeft "3376"; repStart "-2177"; chr18 rmsk exon 71201271 71201446 363 - . gene_id "ERVLE_18q22.3b"; transcript_id "ERVLE_18q22.3b"; locus "ERVLE_18q22.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3407"; repClass "LTR"; repEnd "335"; repFamily "ERVL"; repLeft "146"; repStart "-328"; ### ERVLE_18q22.3c ### chr18 rmsk gene 71493712 71494515 . - . gene_id "ERVLE_18q22.3c"; transcript_id "ERVLE_18q22.3c"; locus "ERVLE_18q22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3409"; model_cov "613"; model_pct "10.8"; chr18 rmsk exon 71493712 71494094 831 - . gene_id "ERVLE_18q22.3c"; transcript_id "ERVLE_18q22.3c"; locus "ERVLE_18q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3409"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "1226"; repStart "-4050"; chr18 rmsk exon 71494309 71494515 403 - . gene_id "ERVLE_18q22.3c"; transcript_id "ERVLE_18q22.3c"; locus "ERVLE_18q22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3409"; repClass "LTR"; repEnd "1195"; repFamily "ERVL"; repLeft "973"; repStart "-4472"; ### ERVLE_18q22.3d ### chr18 rmsk gene 71607569 71608321 . + . gene_id "ERVLE_18q22.3d"; transcript_id "ERVLE_18q22.3d"; locus "ERVLE_18q22.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3410"; model_cov "803"; model_pct "14.2"; chr18 rmsk exon 71607569 71608321 1432 + . gene_id "ERVLE_18q22.3d"; transcript_id "ERVLE_18q22.3d"; locus "ERVLE_18q22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3410"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "-391"; repStart "4473"; ### HERVL_18q22.3a ### chr18 rmsk gene 71691677 71692947 . - . gene_id "HERVL_18q22.3a"; transcript_id "HERVL_18q22.3a"; locus "HERVL_18q22.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1193"; model_cov "832"; model_pct "14.7"; chr18 rmsk exon 71691677 71692112 1683 - . gene_id "HERVL_18q22.3a"; transcript_id "HERVL_18q22.3a"; locus "HERVL_18q22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1193"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "-100"; repStart "-94"; chr18 rmsk exon 71692113 71692947 5636 - . gene_id "HERVL_18q22.3a"; transcript_id "HERVL_18q22.3a"; locus "HERVL_18q22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1193"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4822"; repStart "0"; ### HERVL_18q22.3b ### chr18 rmsk gene 71763849 71767353 . + . gene_id "HERVL_18q22.3b"; transcript_id "HERVL_18q22.3b"; locus "HERVL_18q22.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1194"; model_cov "2481"; model_pct "43.9"; chr18 rmsk exon 71763849 71765335 10664 + . gene_id "HERVL_18q22.3b"; transcript_id "HERVL_18q22.3b"; locus "HERVL_18q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1194"; repClass "LTR"; repEnd "4490"; repFamily "ERVL"; repLeft "-1164"; repStart "3011"; chr18 rmsk exon 71765325 71765386 459 + . gene_id "HERVL_18q22.3b"; transcript_id "HERVL_18q22.3b"; locus "HERVL_18q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1194"; repClass "LTR"; repEnd "4706"; repFamily "ERVL"; repLeft "-948"; repStart "4645"; chr18 rmsk exon 71765854 71766808 6917 + . gene_id "HERVL_18q22.3b"; transcript_id "HERVL_18q22.3b"; locus "HERVL_18q22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1194"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "4712"; chr18 rmsk exon 71766810 71767353 1759 + . gene_id "HERVL_18q22.3b"; transcript_id "HERVL_18q22.3b"; locus "HERVL_18q22.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1194"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### ERVLE_18q22.3e ### chr18 rmsk gene 71786011 71788226 . + . gene_id "ERVLE_18q22.3e"; transcript_id "ERVLE_18q22.3e"; locus "ERVLE_18q22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3411"; model_cov "2176"; model_pct "38.4"; chr18 rmsk exon 71786011 71786583 1249 + . gene_id "ERVLE_18q22.3e"; transcript_id "ERVLE_18q22.3e"; locus "ERVLE_18q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3411"; repClass "LTR"; repEnd "775"; repFamily "ERVL"; repLeft "-4892"; repStart "197"; chr18 rmsk exon 71786685 71787313 1388 + . gene_id "ERVLE_18q22.3e"; transcript_id "ERVLE_18q22.3e"; locus "ERVLE_18q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3411"; repClass "LTR"; repEnd "1566"; repFamily "ERVL"; repLeft "-4101"; repStart "926"; chr18 rmsk exon 71787299 71788226 2551 + . gene_id "ERVLE_18q22.3e"; transcript_id "ERVLE_18q22.3e"; locus "ERVLE_18q22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3411"; repClass "LTR"; repEnd "4234"; repFamily "ERVL"; repLeft "-1433"; repStart "3276"; ### MER101_18q22.3a ### chr18 rmsk gene 71789855 71790578 . - . gene_id "MER101_18q22.3a"; transcript_id "MER101_18q22.3a"; locus "MER101_18q22.3a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0379"; model_cov "821"; model_pct "12.4"; chr18 rmsk exon 71789855 71789915 442 - . gene_id "MER101_18q22.3a"; transcript_id "MER101_18q22.3a"; locus "MER101_18q22.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0379"; repClass "LTR"; repEnd "2949"; repFamily "ERV1"; repLeft "2905"; repStart "-3690"; chr18 rmsk exon 71789992 71790578 1855 - . gene_id "MER101_18q22.3a"; transcript_id "MER101_18q22.3a"; locus "MER101_18q22.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0379"; repClass "LTR"; repEnd "2904"; repFamily "ERV1"; repLeft "2127"; repStart "-3735"; ### LTR57_18q22.3a ### chr18 rmsk gene 71818647 71819199 . - . gene_id "LTR57_18q22.3a"; transcript_id "LTR57_18q22.3a"; locus "LTR57_18q22.3a"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0167"; model_cov "633"; model_pct "11.8"; chr18 rmsk exon 71818647 71819199 3101 - . gene_id "LTR57_18q22.3a"; transcript_id "LTR57_18q22.3a"; locus "LTR57_18q22.3a"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0167"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "988"; repStart "-3722"; ### LTR57_18q22.3b ### chr18 rmsk gene 71819302 71819876 . - . gene_id "LTR57_18q22.3b"; transcript_id "LTR57_18q22.3b"; locus "LTR57_18q22.3b"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0168"; model_cov "661"; model_pct "12.4"; chr18 rmsk exon 71819302 71819876 3101 - . gene_id "LTR57_18q22.3b"; transcript_id "LTR57_18q22.3b"; locus "LTR57_18q22.3b"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0168"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "960"; repStart "-3722"; ### ERVLE_18q22.3f ### chr18 rmsk gene 71960483 71961610 . - . gene_id "ERVLE_18q22.3f"; transcript_id "ERVLE_18q22.3f"; locus "ERVLE_18q22.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3413"; model_cov "1131"; model_pct "20.0"; chr18 rmsk exon 71960483 71961610 2222 - . gene_id "ERVLE_18q22.3f"; transcript_id "ERVLE_18q22.3f"; locus "ERVLE_18q22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3413"; repClass "LTR"; repEnd "4447"; repFamily "ERVL"; repLeft "3316"; repStart "-1220"; ### ERVLE_18q22.3g ### chr18 rmsk gene 72113517 72115205 . + . gene_id "ERVLE_18q22.3g"; transcript_id "ERVLE_18q22.3g"; locus "ERVLE_18q22.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3414"; model_cov "1425"; model_pct "25.1"; chr18 rmsk exon 72113517 72114125 2953 + . gene_id "ERVLE_18q22.3g"; transcript_id "ERVLE_18q22.3g"; locus "ERVLE_18q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3414"; repClass "LTR"; repEnd "674"; repFamily "ERVL"; repLeft "-4993"; repStart "52"; chr18 rmsk exon 72114437 72115205 2953 + . gene_id "ERVLE_18q22.3g"; transcript_id "ERVLE_18q22.3g"; locus "ERVLE_18q22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3414"; repClass "LTR"; repEnd "1478"; repFamily "ERVL"; repLeft "-4189"; repStart "675"; ### ERVLE_18q22.3h ### chr18 rmsk gene 72139711 72142514 . + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3415"; model_cov "1380"; model_pct "24.4"; chr18 rmsk exon 72139711 72139833 333 + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3415"; repClass "LTR"; repEnd "2033"; repFamily "ERVL"; repLeft "-3634"; repStart "1911"; chr18 rmsk exon 72140004 72140293 365 + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3415"; repClass "LTR"; repEnd "2503"; repFamily "ERVL"; repLeft "-3164"; repStart "2201"; chr18 rmsk exon 72140760 72140935 357 + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3415"; repClass "LTR"; repEnd "3308"; repFamily "ERVL"; repLeft "-2359"; repStart "3132"; chr18 rmsk exon 72141583 72141852 441 + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3415"; repClass "LTR"; repEnd "4271"; repFamily "ERVL"; repLeft "-1396"; repStart "3993"; chr18 rmsk exon 72142020 72142514 454 + . gene_id "ERVLE_18q22.3h"; transcript_id "ERVLE_18q22.3h"; locus "ERVLE_18q22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3415"; repClass "LTR"; repEnd "5061"; repFamily "ERVL"; repLeft "-606"; repStart "4559"; ### ERV316A3_18q22.3a ### chr18 rmsk gene 72254937 72256025 . + . gene_id "ERV316A3_18q22.3a"; transcript_id "ERV316A3_18q22.3a"; locus "ERV316A3_18q22.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2602"; model_cov "550"; model_pct "10.5"; chr18 rmsk exon 72254937 72255166 443 + . gene_id "ERV316A3_18q22.3a"; transcript_id "ERV316A3_18q22.3a"; locus "ERV316A3_18q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2602"; repClass "LTR"; repEnd "2434"; repFamily "ERVL"; repLeft "-2792"; repStart "2209"; chr18 rmsk exon 72255500 72255547 425 + . gene_id "ERV316A3_18q22.3a"; transcript_id "ERV316A3_18q22.3a"; locus "ERV316A3_18q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2602"; repClass "LTR"; repEnd "2860"; repFamily "ERVL"; repLeft "-2366"; repStart "2827"; chr18 rmsk exon 72255746 72256025 602 + . gene_id "ERV316A3_18q22.3a"; transcript_id "ERV316A3_18q22.3a"; locus "ERV316A3_18q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2602"; repClass "LTR"; repEnd "2906"; repFamily "ERVL"; repLeft "-2320"; repStart "2614"; ### ERVLE_18q22.3i ### chr18 rmsk gene 72375298 72376381 . + . gene_id "ERVLE_18q22.3i"; transcript_id "ERVLE_18q22.3i"; locus "ERVLE_18q22.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3416"; model_cov "1111"; model_pct "19.6"; chr18 rmsk exon 72375298 72375644 712 + . gene_id "ERVLE_18q22.3i"; transcript_id "ERVLE_18q22.3i"; locus "ERVLE_18q22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3416"; repClass "LTR"; repEnd "2613"; repFamily "ERVL"; repLeft "-3054"; repStart "2259"; chr18 rmsk exon 72375645 72376381 1622 + . gene_id "ERVLE_18q22.3i"; transcript_id "ERVLE_18q22.3i"; locus "ERVLE_18q22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3416"; repClass "LTR"; repEnd "3673"; repFamily "ERVL"; repLeft "-1994"; repStart "2916"; ### ERVLB4_18q22.3 ### chr18 rmsk gene 72388479 72396137 . + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1644"; model_cov "4774"; model_pct "83.5"; chr18 rmsk exon 72388479 72388629 587 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "594"; repFamily "ERVL"; repLeft "-69"; repStart "444"; chr18 rmsk exon 72388824 72390038 3214 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "1406"; repFamily "ERVL"; repLeft "-4308"; repStart "65"; chr18 rmsk exon 72390330 72390539 845 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "-4102"; repStart "1407"; chr18 rmsk exon 72390619 72390797 707 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "1802"; repFamily "ERVL"; repLeft "-3912"; repStart "1626"; chr18 rmsk exon 72390788 72390848 5653 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "2205"; repFamily "ERVL"; repLeft "-3509"; repStart "2154"; chr18 rmsk exon 72391154 72392786 5653 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "3904"; repFamily "ERVL"; repLeft "-1810"; repStart "2206"; chr18 rmsk exon 72393876 72394277 2042 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "4303"; repFamily "ERVL"; repLeft "-1411"; repStart "3897"; chr18 rmsk exon 72394379 72394713 2670 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "5153"; repFamily "ERVL"; repLeft "-561"; repStart "4816"; chr18 rmsk exon 72395015 72395542 2670 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5154"; chr18 rmsk exon 72395543 72396137 1553 + . gene_id "ERVLB4_18q22.3"; transcript_id "ERVLB4_18q22.3"; locus "ERVLB4_18q22.3"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1644"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER61_18q22.3 ### chr18 rmsk gene 72692108 72698130 . + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0354"; model_cov "4384"; model_pct "84.0"; chr18 rmsk exon 72692108 72692185 346 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0354"; repClass "LTR"; repEnd "78"; repFamily "ERV1"; repLeft "-263"; repStart "1"; chr18 rmsk exon 72692235 72692553 1722 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0354"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-2"; repStart "48"; chr18 rmsk exon 72692556 72693147 2461 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0354"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "1"; chr18 rmsk exon 72693128 72693567 23334 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0354"; repClass "LTR"; repEnd "1844"; repFamily "ERV1"; repLeft "-3373"; repStart "1396"; chr18 rmsk exon 72693865 72695838 23334 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0354"; repClass "LTR"; repEnd "3813"; repFamily "ERV1"; repLeft "-1404"; repStart "1845"; chr18 rmsk exon 72696141 72697436 23334 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0354"; repClass "LTR"; repEnd "5160"; repFamily "ERV1"; repLeft "-57"; repStart "3814"; chr18 rmsk exon 72697744 72697815 23334 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0354"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5161"; chr18 rmsk exon 72697816 72698130 1636 + . gene_id "MER61_18q22.3"; transcript_id "MER61_18q22.3"; locus "MER61_18q22.3"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0354"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_18q22.3b ### chr18 rmsk gene 72897666 72899819 . + . gene_id "ERV316A3_18q22.3b"; transcript_id "ERV316A3_18q22.3b"; locus "ERV316A3_18q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2604"; model_cov "990"; model_pct "18.9"; chr18 rmsk exon 72897666 72898228 667 + . gene_id "ERV316A3_18q22.3b"; transcript_id "ERV316A3_18q22.3b"; locus "ERV316A3_18q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2604"; repClass "LTR"; repEnd "1703"; repFamily "ERVL"; repLeft "-3523"; repStart "1109"; chr18 rmsk exon 72898834 72898969 430 + . gene_id "ERV316A3_18q22.3b"; transcript_id "ERV316A3_18q22.3b"; locus "ERV316A3_18q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2604"; repClass "LTR"; repEnd "1903"; repFamily "ERVL"; repLeft "-3323"; repStart "1768"; chr18 rmsk exon 72899280 72899497 324 + . gene_id "ERV316A3_18q22.3b"; transcript_id "ERV316A3_18q22.3b"; locus "ERV316A3_18q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2604"; repClass "LTR"; repEnd "2412"; repFamily "ERVL"; repLeft "-2814"; repStart "2151"; chr18 rmsk exon 72899498 72899819 477 + . gene_id "ERV316A3_18q22.3b"; transcript_id "ERV316A3_18q22.3b"; locus "ERV316A3_18q22.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2604"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-21"; repStart "70"; ### PRIMA41_18q22.3 ### chr18 rmsk gene 72926684 72930209 . + . gene_id "PRIMA41_18q22.3"; transcript_id "PRIMA41_18q22.3"; locus "PRIMA41_18q22.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0139"; model_cov "3275"; model_pct "42.2"; chr18 rmsk exon 72926684 72927383 3763 + . gene_id "PRIMA41_18q22.3"; transcript_id "PRIMA41_18q22.3"; locus "PRIMA41_18q22.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0139"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "-4994"; repStart "2058"; chr18 rmsk exon 72927686 72930209 3763 + . gene_id "PRIMA41_18q22.3"; transcript_id "PRIMA41_18q22.3"; locus "PRIMA41_18q22.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0139"; repClass "LTR"; repEnd "5334"; repFamily "ERV1"; repLeft "-2422"; repStart "2763"; ### ERV316A3_18q22.3c ### chr18 rmsk gene 72962798 72964535 . + . gene_id "ERV316A3_18q22.3c"; transcript_id "ERV316A3_18q22.3c"; locus "ERV316A3_18q22.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2605"; model_cov "1574"; model_pct "30.1"; chr18 rmsk exon 72962798 72963630 711 + . gene_id "ERV316A3_18q22.3c"; transcript_id "ERV316A3_18q22.3c"; locus "ERV316A3_18q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2605"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "-1793"; repStart "2616"; chr18 rmsk exon 72963632 72963800 328 + . gene_id "ERV316A3_18q22.3c"; transcript_id "ERV316A3_18q22.3c"; locus "ERV316A3_18q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2605"; repClass "LTR"; repEnd "3926"; repFamily "ERVL"; repLeft "-1300"; repStart "3733"; chr18 rmsk exon 72963990 72964535 717 + . gene_id "ERV316A3_18q22.3c"; transcript_id "ERV316A3_18q22.3c"; locus "ERV316A3_18q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2605"; repClass "LTR"; repEnd "5121"; repFamily "ERVL"; repLeft "-105"; repStart "4557"; ### ERV316A3_18q22.3d ### chr18 rmsk gene 73051587 73053651 . - . gene_id "ERV316A3_18q22.3d"; transcript_id "ERV316A3_18q22.3d"; locus "ERV316A3_18q22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2606"; model_cov "1110"; model_pct "21.2"; chr18 rmsk exon 73051587 73051869 307 - . gene_id "ERV316A3_18q22.3d"; transcript_id "ERV316A3_18q22.3d"; locus "ERV316A3_18q22.3d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2606"; repClass "LTR"; repEnd "393"; repFamily "ERVL"; repLeft "100"; repStart "-87"; chr18 rmsk exon 73051935 73052576 2055 - . gene_id "ERV316A3_18q22.3d"; transcript_id "ERV316A3_18q22.3d"; locus "ERV316A3_18q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2606"; repClass "LTR"; repEnd "5156"; repFamily "ERVL"; repLeft "4484"; repStart "-70"; chr18 rmsk exon 73052793 73053053 868 - . gene_id "ERV316A3_18q22.3d"; transcript_id "ERV316A3_18q22.3d"; locus "ERV316A3_18q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2606"; repClass "LTR"; repEnd "4429"; repFamily "ERVL"; repLeft "4151"; repStart "-797"; chr18 rmsk exon 73053502 73053651 868 - . gene_id "ERV316A3_18q22.3d"; transcript_id "ERV316A3_18q22.3d"; locus "ERV316A3_18q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2606"; repClass "LTR"; repEnd "4150"; repFamily "ERVL"; repLeft "3990"; repStart "-1076"; ### HERVH_18q22.3a ### chr18 rmsk gene 73324615 73330362 . + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1137"; model_cov "4919"; model_pct "63.8"; chr18 rmsk exon 73324615 73325047 2654 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 73325048 73328058 19985 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr18 rmsk exon 73328038 73328187 962 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr18 rmsk exon 73328178 73328677 3332 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr18 rmsk exon 73328680 73329342 4438 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr18 rmsk exon 73329340 73329562 1358 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr18 rmsk exon 73329561 73329930 2315 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr18 rmsk exon 73329931 73330362 2549 + . gene_id "HERVH_18q22.3a"; transcript_id "HERVH_18q22.3a"; locus "HERVH_18q22.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1137"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL40_18q22.3 ### chr18 rmsk gene 73402364 73407061 . - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0418"; model_cov "1772"; model_pct "32.0"; chr18 rmsk exon 73402364 73402693 1336 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "1"; repStart "-143"; chr18 rmsk exon 73402696 73402834 403 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "5372"; repStart "-2"; chr18 rmsk exon 73402835 73402958 393 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "3836"; repFamily "ERVL"; repLeft "3707"; repStart "-1694"; chr18 rmsk exon 73403013 73403064 1276 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "3336"; repFamily "ERVL"; repLeft "3289"; repStart "-2194"; chr18 rmsk exon 73403191 73403795 1276 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "3288"; repFamily "ERVL"; repLeft "2622"; repStart "-2242"; chr18 rmsk exon 73403987 73404194 515 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "1358"; repFamily "ERVL"; repLeft "1141"; repStart "-4172"; chr18 rmsk exon 73404338 73404433 315 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "993"; repFamily "ERVL"; repLeft "896"; repStart "-4537"; chr18 rmsk exon 73405163 73405235 273 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "497"; repStart "-4960"; chr18 rmsk exon 73406235 73406607 891 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "18"; repStart "-5125"; chr18 rmsk exon 73406622 73407061 1243 - . gene_id "HERVL40_18q22.3"; transcript_id "HERVL40_18q22.3"; locus "HERVL40_18q22.3"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0418"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "19"; repStart "0"; ### HERVL_18q22.3c ### chr18 rmsk gene 73515234 73516948 . + . gene_id "HERVL_18q22.3c"; transcript_id "HERVL_18q22.3c"; locus "HERVL_18q22.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1197"; model_cov "889"; model_pct "15.7"; chr18 rmsk exon 73515234 73515671 3043 + . gene_id "HERVL_18q22.3c"; transcript_id "HERVL_18q22.3c"; locus "HERVL_18q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1197"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr18 rmsk exon 73515673 73516000 2518 + . gene_id "HERVL_18q22.3c"; transcript_id "HERVL_18q22.3c"; locus "HERVL_18q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1197"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "-5326"; repStart "2"; chr18 rmsk exon 73516000 73516550 4261 + . gene_id "HERVL_18q22.3c"; transcript_id "HERVL_18q22.3c"; locus "HERVL_18q22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1197"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5091"; chr18 rmsk exon 73516551 73516948 2847 + . gene_id "HERVL_18q22.3c"; transcript_id "HERVL_18q22.3c"; locus "HERVL_18q22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1197"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### HERVL_18q22.3d ### chr18 rmsk gene 73613758 73616756 . - . gene_id "HERVL_18q22.3d"; transcript_id "HERVL_18q22.3d"; locus "HERVL_18q22.3d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1198"; model_cov "1808"; model_pct "32.0"; chr18 rmsk exon 73613758 73614147 665 - . gene_id "HERVL_18q22.3d"; transcript_id "HERVL_18q22.3d"; locus "HERVL_18q22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1198"; repClass "LTR"; repEnd "5270"; repFamily "ERVL"; repLeft "4878"; repStart "-384"; chr18 rmsk exon 73615353 73616756 1771 - . gene_id "HERVL_18q22.3d"; transcript_id "HERVL_18q22.3d"; locus "HERVL_18q22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1198"; repClass "LTR"; repEnd "4582"; repFamily "ERVL"; repLeft "3166"; repStart "-1072"; ### HERVL_18q22.3e ### chr18 rmsk gene 73831581 73833353 . - . gene_id "HERVL_18q22.3e"; transcript_id "HERVL_18q22.3e"; locus "HERVL_18q22.3e"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1199"; model_cov "1229"; model_pct "21.7"; chr18 rmsk exon 73831581 73831711 309 - . gene_id "HERVL_18q22.3e"; transcript_id "HERVL_18q22.3e"; locus "HERVL_18q22.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1199"; repClass "LTR"; repEnd "4515"; repFamily "ERVL"; repLeft "4316"; repStart "-1139"; chr18 rmsk exon 73831845 73832653 403 - . gene_id "HERVL_18q22.3e"; transcript_id "HERVL_18q22.3e"; locus "HERVL_18q22.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1199"; repClass "LTR"; repEnd "4464"; repFamily "ERVL"; repLeft "3725"; repStart "-1190"; chr18 rmsk exon 73833059 73833353 735 - . gene_id "HERVL_18q22.3e"; transcript_id "HERVL_18q22.3e"; locus "HERVL_18q22.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1199"; repClass "LTR"; repEnd "3297"; repFamily "ERVL"; repLeft "3006"; repStart "-2357"; ### ERV316A3_18q22.3e ### chr18 rmsk gene 74149836 74153074 . - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2607"; model_cov "2181"; model_pct "41.7"; chr18 rmsk exon 74149836 74150264 1611 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "2521"; repStart "-2255"; chr18 rmsk exon 74150475 74151061 1611 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "2520"; repFamily "ERVL"; repLeft "1940"; repStart "-2706"; chr18 rmsk exon 74151212 74151311 526 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "2019"; repFamily "ERVL"; repLeft "1920"; repStart "-3207"; chr18 rmsk exon 74151361 74151574 459 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "1806"; repFamily "ERVL"; repLeft "1587"; repStart "-3420"; chr18 rmsk exon 74151590 74151903 753 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "1500"; repFamily "ERVL"; repLeft "1165"; repStart "-3726"; chr18 rmsk exon 74152018 74152277 339 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "995"; repFamily "ERVL"; repLeft "732"; repStart "-4231"; chr18 rmsk exon 74152495 74152719 557 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "233"; repStart "-4758"; chr18 rmsk exon 74152749 74153074 999 - . gene_id "ERV316A3_18q22.3e"; transcript_id "ERV316A3_18q22.3e"; locus "ERV316A3_18q22.3e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2607"; repClass "LTR"; repEnd "408"; repFamily "ERVL"; repLeft "63"; repStart "-30"; ### ERVLE_18q22.3j ### chr18 rmsk gene 74213725 74214757 . - . gene_id "ERVLE_18q22.3j"; transcript_id "ERVLE_18q22.3j"; locus "ERVLE_18q22.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3419"; model_cov "815"; model_pct "14.4"; chr18 rmsk exon 74213725 74214179 1158 - . gene_id "ERVLE_18q22.3j"; transcript_id "ERVLE_18q22.3j"; locus "ERVLE_18q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3419"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "4747"; repStart "-434"; chr18 rmsk exon 74214459 74214757 1264 - . gene_id "ERVLE_18q22.3j"; transcript_id "ERVLE_18q22.3j"; locus "ERVLE_18q22.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3419"; repClass "LTR"; repEnd "4344"; repFamily "ERVL"; repLeft "4015"; repStart "-1323"; ### HERVH_18q22.3b ### chr18 rmsk gene 74293089 74299036 . + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1138"; model_cov "5635"; model_pct "73.1"; chr18 rmsk exon 74293089 74293242 749 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "186"; repFamily "ERV1"; repLeft "-264"; repStart "1"; chr18 rmsk exon 74293243 74293654 2636 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-7251"; repStart "52"; chr18 rmsk exon 74293656 74295723 11962 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "804"; chr18 rmsk exon 74295703 74295898 1254 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "-4375"; repStart "3140"; chr18 rmsk exon 74295904 74297921 12662 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "5839"; repFamily "ERV1"; repLeft "-1874"; repStart "3787"; chr18 rmsk exon 74297899 74298094 1120 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6754"; chr18 rmsk exon 74298089 74298143 306 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr18 rmsk exon 74298145 74298681 3805 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr18 rmsk exon 74298682 74299036 2145 + . gene_id "HERVH_18q22.3b"; transcript_id "HERVH_18q22.3b"; locus "HERVH_18q22.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1138"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_18q22.3b ### chr18 rmsk gene 74300764 74303204 . + . gene_id "MER101_18q22.3b"; transcript_id "MER101_18q22.3b"; locus "MER101_18q22.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0380"; model_cov "2213"; model_pct "33.3"; chr18 rmsk exon 74300764 74303204 4188 + . gene_id "MER101_18q22.3b"; transcript_id "MER101_18q22.3b"; locus "MER101_18q22.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0380"; repClass "LTR"; repEnd "3747"; repFamily "ERV1"; repLeft "-2892"; repStart "1534"; ### HERVL_18q23 ### chr18 rmsk gene 75838188 75842897 . + . gene_id "HERVL_18q23"; transcript_id "HERVL_18q23"; locus "HERVL_18q23"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1200"; model_cov "3827"; model_pct "67.7"; chr18 rmsk exon 75838188 75838566 2078 + . gene_id "HERVL_18q23"; transcript_id "HERVL_18q23"; locus "HERVL_18q23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1200"; repClass "LTR"; repEnd "275"; repFamily "ERVL"; repLeft "-178"; repStart "-100"; chr18 rmsk exon 75838567 75842381 28774 + . gene_id "HERVL_18q23"; transcript_id "HERVL_18q23"; locus "HERVL_18q23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1200"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1827"; chr18 rmsk exon 75842382 75842897 2351 + . gene_id "HERVL_18q23"; transcript_id "HERVL_18q23"; locus "HERVL_18q23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1200"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER101_18q23a ### chr18 rmsk gene 76176659 76180987 . - . gene_id "MER101_18q23a"; transcript_id "MER101_18q23a"; locus "MER101_18q23a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0381"; model_cov "3753"; model_pct "56.5"; chr18 rmsk exon 76176659 76177100 2278 - . gene_id "MER101_18q23a"; transcript_id "MER101_18q23a"; locus "MER101_18q23a"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0381"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18 rmsk exon 76177173 76177554 1306 - . gene_id "MER101_18q23a"; transcript_id "MER101_18q23a"; locus "MER101_18q23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0381"; repClass "LTR"; repEnd "6545"; repFamily "ERV1"; repLeft "6165"; repStart "-94"; chr18 rmsk exon 76177550 76179720 4983 - . gene_id "MER101_18q23a"; transcript_id "MER101_18q23a"; locus "MER101_18q23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0381"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "3090"; repStart "-1237"; chr18 rmsk exon 76180244 76180987 4983 - . gene_id "MER101_18q23a"; transcript_id "MER101_18q23a"; locus "MER101_18q23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0381"; repClass "LTR"; repEnd "2781"; repFamily "ERV1"; repLeft "1720"; repStart "-3858"; ### MER101_18q23b ### chr18 rmsk gene 76181295 76184384 . - . gene_id "MER101_18q23b"; transcript_id "MER101_18q23b"; locus "MER101_18q23b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0382"; model_cov "1646"; model_pct "24.8"; chr18 rmsk exon 76181295 76181946 840 - . gene_id "MER101_18q23b"; transcript_id "MER101_18q23b"; locus "MER101_18q23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0382"; repClass "LTR"; repEnd "3637"; repFamily "ERV1"; repLeft "3057"; repStart "-3002"; chr18 rmsk exon 76182932 76183938 2963 - . gene_id "MER101_18q23b"; transcript_id "MER101_18q23b"; locus "MER101_18q23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0382"; repClass "LTR"; repEnd "3089"; repFamily "ERV1"; repLeft "2023"; repStart "-3550"; chr18 rmsk exon 76184206 76184384 2092 - . gene_id "MER101_18q23b"; transcript_id "MER101_18q23b"; locus "MER101_18q23b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0382"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "275"; repStart "0"; ### LTR57_18q23 ### chr18 rmsk gene 76181619 76182615 . - . gene_id "LTR57_18q23"; transcript_id "LTR57_18q23"; locus "LTR57_18q23"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0169"; model_cov "1011"; model_pct "18.9"; chr18 rmsk exon 76181619 76182615 2463 - . gene_id "LTR57_18q23"; transcript_id "LTR57_18q23"; locus "LTR57_18q23"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0169"; repClass "LTR"; repEnd "1568"; repFamily "ERVL"; repLeft "557"; repStart "-3775"; ### HUERSP1_18q23 ### chr18 rmsk gene 76730652 76733362 . - . gene_id "HUERSP1_18q23"; transcript_id "HUERSP1_18q23"; locus "HUERSP1_18q23"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0193"; model_cov "2220"; model_pct "35.4"; chr18 rmsk exon 76730652 76731870 15144 - . gene_id "HUERSP1_18q23"; transcript_id "HUERSP1_18q23"; locus "HUERSP1_18q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0193"; repClass "LTR"; repEnd "2222"; repFamily "ERV1"; repLeft "1063"; repStart "-4041"; chr18 rmsk exon 76732166 76733193 15144 - . gene_id "HUERSP1_18q23"; transcript_id "HUERSP1_18q23"; locus "HUERSP1_18q23"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0193"; repClass "LTR"; repEnd "1062"; repFamily "ERV1"; repLeft "1"; repStart "-5201"; chr18 rmsk exon 76733194 76733362 1105 - . gene_id "HUERSP1_18q23"; transcript_id "HUERSP1_18q23"; locus "HUERSP1_18q23"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0193"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "510"; repStart "0"; ### MER101_18q23c ### chr18 rmsk gene 76744136 76745533 . - . gene_id "MER101_18q23c"; transcript_id "MER101_18q23c"; locus "MER101_18q23c"; category "internal"; intModel "MER101-int"; locid "MER101-int_0383"; model_cov "680"; model_pct "10.2"; chr18 rmsk exon 76744136 76744373 3553 - . gene_id "MER101_18q23c"; transcript_id "MER101_18q23c"; locus "MER101_18q23c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0383"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "4389"; repStart "-2023"; chr18 rmsk exon 76744679 76745060 3553 - . gene_id "MER101_18q23c"; transcript_id "MER101_18q23c"; locus "MER101_18q23c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0383"; repClass "LTR"; repEnd "4388"; repFamily "ERV1"; repLeft "4013"; repStart "-2251"; chr18 rmsk exon 76745366 76745533 3553 - . gene_id "MER101_18q23c"; transcript_id "MER101_18q23c"; locus "MER101_18q23c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0383"; repClass "LTR"; repEnd "4012"; repFamily "ERV1"; repLeft "3934"; repStart "-2627"; ### ERV316A3_18q23 ### chr18 rmsk gene 77571425 77572220 . + . gene_id "ERV316A3_18q23"; transcript_id "ERV316A3_18q23"; locus "ERV316A3_18q23"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2610"; model_cov "857"; model_pct "16.4"; chr18 rmsk exon 77571425 77572220 733 + . gene_id "ERV316A3_18q23"; transcript_id "ERV316A3_18q23"; locus "ERV316A3_18q23"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2610"; repClass "LTR"; repEnd "1398"; repFamily "ERVL"; repLeft "-3828"; repStart "541"; ### ERVLE_18q23 ### chr18 rmsk gene 79053713 79056976 . - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3422"; model_cov "1493"; model_pct "26.3"; chr18 rmsk exon 79053713 79054071 429 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "282"; repStart "0"; chr18 rmsk exon 79054173 79054316 341 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "183"; repFamily "ERVL"; repLeft "35"; repStart "-480"; chr18 rmsk exon 79054345 79054474 314 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "5632"; repFamily "ERVL"; repLeft "5504"; repStart "-35"; chr18 rmsk exon 79054598 79055309 1393 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4471"; repStart "-370"; chr18 rmsk exon 79055770 79055884 340 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4304"; repStart "-1231"; chr18 rmsk exon 79056261 79056325 1355 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "406"; repStart "-5203"; chr18 rmsk exon 79056629 79056976 1314 - . gene_id "ERVLE_18q23"; transcript_id "ERVLE_18q23"; locus "ERVLE_18q23"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3422"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "56"; repStart "-5262"; ### MER101_18q23d ### chr18 rmsk gene 79664584 79669115 . + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0385"; model_cov "3617"; model_pct "54.5"; chr18 rmsk exon 79664584 79664670 582 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "2656"; repFamily "ERV1"; repLeft "-3983"; repStart "2568"; chr18 rmsk exon 79664809 79665262 3304 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "3426"; repFamily "ERV1"; repLeft "-3213"; repStart "2951"; chr18 rmsk exon 79665561 79666037 3304 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "-2854"; repStart "2959"; chr18 rmsk exon 79666337 79667667 3072 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "3123"; chr18 rmsk exon 79667953 79668254 1995 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "6304"; repFamily "ERV1"; repLeft "-335"; repStart "5902"; chr18 rmsk exon 79668376 79668716 1948 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0385"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "6305"; chr18 rmsk exon 79668816 79669115 1205 + . gene_id "MER101_18q23d"; transcript_id "MER101_18q23d"; locus "MER101_18q23d"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0385"; repClass "LTR"; repEnd "387"; repFamily "ERV1"; repLeft "-58"; repStart "40"; ### PRIMA4_18q23a ### chr18 rmsk gene 79992495 79999727 . + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0212"; model_cov "5429"; model_pct "65.6"; chr18 rmsk exon 79992495 79993124 3775 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18 rmsk exon 79993127 79994439 8475 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "1380"; repFamily "ERV1"; repLeft "-6890"; repStart "3"; chr18 rmsk exon 79994443 79994542 689 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "1380"; repFamily "ERV1"; repLeft "-6890"; repStart "1282"; chr18 rmsk exon 79994546 79994644 732 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "1380"; repFamily "ERV1"; repLeft "-6890"; repStart "1282"; chr18 rmsk exon 79994648 79995820 26150 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "2475"; repFamily "ERV1"; repLeft "-5795"; repStart "1282"; chr18 rmsk exon 79996128 79996661 26150 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "3005"; repFamily "ERV1"; repLeft "-5265"; repStart "2476"; chr18 rmsk exon 79996960 79998011 26150 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "4039"; repFamily "ERV1"; repLeft "-4231"; repStart "3006"; chr18 rmsk exon 79998315 79999253 26150 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "4978"; repFamily "ERV1"; repLeft "-3292"; repStart "4040"; chr18 rmsk exon 79999558 79999727 26150 + . gene_id "PRIMA4_18q23a"; transcript_id "PRIMA4_18q23a"; locus "PRIMA4_18q23a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0212"; repClass "LTR"; repEnd "5142"; repFamily "ERV1"; repLeft "-3128"; repStart "4979"; ### HUERSP3_18q23 ### chr18 rmsk gene 80010909 80012828 . - . gene_id "HUERSP3_18q23"; transcript_id "HUERSP3_18q23"; locus "HUERSP3_18q23"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0188"; model_cov "1292"; model_pct "14.5"; chr18 rmsk exon 80010909 80011515 5856 - . gene_id "HUERSP3_18q23"; transcript_id "HUERSP3_18q23"; locus "HUERSP3_18q23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0188"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8312"; repStart "-1"; chr18 rmsk exon 80012148 80012828 5856 - . gene_id "HUERSP3_18q23"; transcript_id "HUERSP3_18q23"; locus "HUERSP3_18q23"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0188"; repClass "LTR"; repEnd "8311"; repFamily "ERV1"; repLeft "7625"; repStart "-608"; ### LTR25_18q23 ### chr18 rmsk gene 80020191 80023821 . - . gene_id "LTR25_18q23"; transcript_id "LTR25_18q23"; locus "LTR25_18q23"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0123"; model_cov "3362"; model_pct "46.8"; chr18 rmsk exon 80020191 80021182 8081 - . gene_id "LTR25_18q23"; transcript_id "LTR25_18q23"; locus "LTR25_18q23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0123"; repClass "LTR"; repEnd "4935"; repFamily "ERV1"; repLeft "3918"; repStart "-2253"; chr18 rmsk exon 80021476 80021996 8081 - . gene_id "LTR25_18q23"; transcript_id "LTR25_18q23"; locus "LTR25_18q23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0123"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "3408"; repStart "-3271"; chr18 rmsk exon 80021997 80023821 11534 - . gene_id "LTR25_18q23"; transcript_id "LTR25_18q23"; locus "LTR25_18q23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0123"; repClass "LTR"; repEnd "2375"; repFamily "ERV1"; repLeft "539"; repStart "-4813"; ### PRIMA4_18q23b ### chr18 rmsk gene 80023832 80033162 . + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0213"; model_cov "8723"; model_pct "100.0"; chr18 rmsk exon 80023832 80023990 1231 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "436"; chr18 rmsk exon 80023991 80027138 57183 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "3259"; repFamily "ERV1"; repLeft "-5011"; repStart "1"; chr18 rmsk exon 80027236 80030683 57183 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "6831"; repFamily "ERV1"; repLeft "-1439"; repStart "3260"; chr18 rmsk exon 80030989 80032361 57183 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "0"; repStart "6376"; chr18 rmsk exon 80032362 80032557 3408 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "195"; repFamily "ERV1"; repLeft "-399"; repStart "1"; chr18 rmsk exon 80032852 80033162 3408 + . gene_id "PRIMA4_18q23b"; transcript_id "PRIMA4_18q23b"; locus "PRIMA4_18q23b"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0213"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "196"; ### PABLA_18q23 ### chr18 rmsk gene 80060215 80064591 . - . gene_id "PABLA_18q23"; transcript_id "PABLA_18q23"; locus "PABLA_18q23"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0136"; model_cov "3017"; model_pct "60.2"; chr18 rmsk exon 80060215 80060977 4089 - . gene_id "PABLA_18q23"; transcript_id "PABLA_18q23"; locus "PABLA_18q23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0136"; repClass "LTR"; repEnd "4799"; repFamily "ERV1"; repLeft "4201"; repStart "-216"; chr18 rmsk exon 80061834 80062241 8843 - . gene_id "PABLA_18q23"; transcript_id "PABLA_18q23"; locus "PABLA_18q23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0136"; repClass "LTR"; repEnd "4282"; repFamily "ERV1"; repLeft "3880"; repStart "-733"; chr18 rmsk exon 80062565 80063233 8843 - . gene_id "PABLA_18q23"; transcript_id "PABLA_18q23"; locus "PABLA_18q23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0136"; repClass "LTR"; repEnd "3879"; repFamily "ERV1"; repLeft "3198"; repStart "-1136"; chr18 rmsk exon 80063527 80064591 8843 - . gene_id "PABLA_18q23"; transcript_id "PABLA_18q23"; locus "PABLA_18q23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0136"; repClass "LTR"; repEnd "1160"; repFamily "ERV1"; repLeft "-176"; repStart "-3855"; ### ERV316A3_19p13.3 ### chr19 rmsk gene 82342 83884 . - . gene_id "ERV316A3_19p13.3"; transcript_id "ERV316A3_19p13.3"; locus "ERV316A3_19p13.3"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2613"; model_cov "893"; model_pct "17.1"; chr19 rmsk exon 82342 82505 299 - . gene_id "ERV316A3_19p13.3"; transcript_id "ERV316A3_19p13.3"; locus "ERV316A3_19p13.3"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2613"; repClass "LTR"; repEnd "379"; repFamily "ERVL"; repLeft "183"; repStart "-110"; chr19 rmsk exon 83005 83884 1014 - . gene_id "ERV316A3_19p13.3"; transcript_id "ERV316A3_19p13.3"; locus "ERV316A3_19p13.3"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2613"; repClass "LTR"; repEnd "4789"; repFamily "ERVL"; repLeft "3896"; repStart "-437"; ### HML2_19p13.3 ### chr19 rmsk gene 385095 387637 . + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0109"; model_cov "1491"; model_pct "19.8"; chr19 rmsk exon 385095 386584 12032 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5950"; chr19 rmsk exon 386680 387637 8361 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV3_19p13.3 ### chr19 rmsk gene 566440 568668 . - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0065"; model_cov "1239"; model_pct "14.7"; chr19 rmsk exon 566440 566617 747 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "497"; repFamily "ERV1"; repLeft "297"; repStart "-99"; chr19 rmsk exon 566639 566854 347 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "3"; repStart "-382"; chr19 rmsk exon 566855 567281 1845 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "8415"; repFamily "ERV1"; repLeft "7994"; repStart "-11"; chr19 rmsk exon 567308 567724 1623 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "5819"; repStart "-2112"; chr19 rmsk exon 568030 568295 1745 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "4919"; repFamily "ERV1"; repLeft "4664"; repStart "-3507"; chr19 rmsk exon 568601 568668 1745 - . gene_id "HERV3_19p13.3"; transcript_id "HERV3_19p13.3"; locus "HERV3_19p13.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0065"; repClass "LTR"; repEnd "4663"; repFamily "ERV1"; repLeft "4595"; repStart "-3763"; ### HERV9_19p13.3 ### chr19 rmsk gene 5158087 5165784 . - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0176"; model_cov "5743"; model_pct "68.1"; chr19 rmsk exon 5158087 5158150 3083 - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0176"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "471"; repStart "0"; chr19 rmsk exon 5158459 5158864 3083 - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0176"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "1"; repStart "-49"; chr19 rmsk exon 5158865 5159654 5784 - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0176"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7642"; repStart "0"; chr19 rmsk exon 5159634 5165376 28017 - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0176"; repClass "LTR"; repEnd "4978"; repFamily "ERV1"; repLeft "29"; repStart "-3458"; chr19 rmsk exon 5165395 5165784 2668 - . gene_id "HERV9_19p13.3"; transcript_id "HERV9_19p13.3"; locus "HERV9_19p13.3"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0176"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "1"; repStart "-229"; ### HERVH_19p13.3a ### chr19 rmsk gene 5548576 5553212 . + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1139"; model_cov "3911"; model_pct "50.7"; chr19 rmsk exon 5548576 5549016 3815 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 5549017 5551892 15423 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr19 rmsk exon 5551872 5552016 835 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 5552007 5552168 1037 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "-4061"; repStart "3492"; chr19 rmsk exon 5552161 5552771 4429 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7106"; chr19 rmsk exon 5552772 5553212 3809 + . gene_id "HERVH_19p13.3a"; transcript_id "HERVH_19p13.3a"; locus "HERVH_19p13.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1139"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_19p13.3b ### chr19 rmsk gene 5847389 5850207 . + . gene_id "HERVH_19p13.3b"; transcript_id "HERVH_19p13.3b"; locus "HERVH_19p13.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1140"; model_cov "2275"; model_pct "29.5"; chr19 rmsk exon 5847389 5847625 3505 + . gene_id "HERVH_19p13.3b"; transcript_id "HERVH_19p13.3b"; locus "HERVH_19p13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1140"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-1"; repStart "226"; chr19 rmsk exon 5847626 5849489 7406 + . gene_id "HERVH_19p13.3b"; transcript_id "HERVH_19p13.3b"; locus "HERVH_19p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1140"; repClass "LTR"; repEnd "1990"; repFamily "ERV1"; repLeft "-5723"; repStart "1"; chr19 rmsk exon 5849489 5849778 1579 + . gene_id "HERVH_19p13.3b"; transcript_id "HERVH_19p13.3b"; locus "HERVH_19p13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1140"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7427"; chr19 rmsk exon 5849779 5850207 3398 + . gene_id "HERVH_19p13.3b"; transcript_id "HERVH_19p13.3b"; locus "HERVH_19p13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1140"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_19p13.3c ### chr19 rmsk gene 5851940 5857653 . + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1141"; model_cov "4413"; model_pct "57.2"; chr19 rmsk exon 5851940 5852530 2794 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "3"; chr19 rmsk exon 5852531 5852959 986 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr19 rmsk exon 5852991 5853278 16329 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "1108"; repFamily "ERV1"; repLeft "-6605"; repStart "792"; chr19 rmsk exon 5853577 5854713 16329 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "2183"; repFamily "ERV1"; repLeft "-5530"; repStart "1109"; chr19 rmsk exon 5855010 5857198 16329 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "5722"; repFamily "ERV1"; repLeft "-1991"; repStart "3157"; chr19 rmsk exon 5857252 5857653 2209 + . gene_id "HERVH_19p13.3c"; transcript_id "HERVH_19p13.3c"; locus "HERVH_19p13.3c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1141"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "85"; ### LTR25_19p13.3 ### chr19 rmsk gene 6293022 6296211 . + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0124"; model_cov "1464"; model_pct "20.4"; chr19 rmsk exon 6293022 6293177 795 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "2384"; repFamily "ERV1"; repLeft "-4804"; repStart "2232"; chr19 rmsk exon 6293180 6293246 2144 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "2965"; repFamily "ERV1"; repLeft "-4223"; repStart "2902"; chr19 rmsk exon 6293545 6293574 2144 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "2994"; repFamily "ERV1"; repLeft "-4194"; repStart "2966"; chr19 rmsk exon 6293883 6294319 5269 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "4182"; repFamily "ERV1"; repLeft "-3006"; repStart "3773"; chr19 rmsk exon 6294652 6295406 5269 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "4884"; repFamily "ERV1"; repLeft "-2304"; repStart "4183"; chr19 rmsk exon 6295708 6296211 5269 + . gene_id "LTR25_19p13.3"; transcript_id "LTR25_19p13.3"; locus "LTR25_19p13.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0124"; repClass "LTR"; repEnd "4996"; repFamily "ERV1"; repLeft "-2192"; repStart "4885"; ### MER4B_19p13.3 ### chr19 rmsk gene 6566474 6567665 . + . gene_id "MER4B_19p13.3"; transcript_id "MER4B_19p13.3"; locus "MER4B_19p13.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0441"; model_cov "822"; model_pct "12.2"; chr19 rmsk exon 6566474 6566787 3332 + . gene_id "MER4B_19p13.3"; transcript_id "MER4B_19p13.3"; locus "MER4B_19p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0441"; repClass "LTR"; repEnd "6258"; repFamily "ERV1"; repLeft "-500"; repStart "5932"; chr19 rmsk exon 6567133 6567665 3332 + . gene_id "MER4B_19p13.3"; transcript_id "MER4B_19p13.3"; locus "MER4B_19p13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0441"; repClass "LTR"; repEnd "6755"; repFamily "ERV1"; repLeft "-3"; repStart "6259"; ### HERVH_19p13.3d ### chr19 rmsk gene 6574614 6577300 . + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1142"; model_cov "2243"; model_pct "29.1"; chr19 rmsk exon 6574614 6576096 5930 + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1142"; repClass "LTR"; repEnd "5251"; repFamily "ERV1"; repLeft "-2462"; repStart "3836"; chr19 rmsk exon 6576074 6576299 1348 + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1142"; repClass "LTR"; repEnd "6949"; repFamily "ERV1"; repLeft "-764"; repStart "6719"; chr19 rmsk exon 6576285 6576346 294 + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1142"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7655"; chr19 rmsk exon 6576348 6576888 3459 + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1142"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr19 rmsk exon 6576889 6577300 2327 + . gene_id "HERVH_19p13.3d"; transcript_id "HERVH_19p13.3d"; locus "HERVH_19p13.3d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1142"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVEA_19p13.3 ### chr19 rmsk gene 6597048 6602002 . + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0084"; model_cov "1940"; model_pct "24.7"; chr19 rmsk exon 6597048 6597508 3633 + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0084"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 6597509 6597892 2901 + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0084"; repClass "LTR"; repEnd "386"; repFamily "ERV1"; repLeft "-7461"; repStart "1"; chr19 rmsk exon 6600098 6601666 12103 + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0084"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "6292"; chr19 rmsk exon 6601667 6601787 1004 + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0084"; repClass "LTR"; repEnd "121"; repFamily "ERV1"; repLeft "-342"; repStart "1"; chr19 rmsk exon 6601786 6602002 1464 + . gene_id "HERVEA_19p13.3"; transcript_id "HERVEA_19p13.3"; locus "HERVEA_19p13.3"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0084"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "246"; ### HARLEQUIN_19p13.3 ### chr19 rmsk gene 6597048 6599985 . + . gene_id "HARLEQUIN_19p13.3"; transcript_id "HARLEQUIN_19p13.3"; locus "HARLEQUIN_19p13.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0158"; model_cov "2109"; model_pct "30.6"; chr19 rmsk exon 6597048 6597508 3633 + . gene_id "HARLEQUIN_19p13.3"; transcript_id "HARLEQUIN_19p13.3"; locus "HARLEQUIN_19p13.3"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0158"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 6597886 6598689 5771 + . gene_id "HARLEQUIN_19p13.3"; transcript_id "HARLEQUIN_19p13.3"; locus "HARLEQUIN_19p13.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0158"; repClass "LTR"; repEnd "1074"; repFamily "ERV1"; repLeft "-5822"; repStart "263"; chr19 rmsk exon 6598673 6599985 8875 + . gene_id "HARLEQUIN_19p13.3"; transcript_id "HARLEQUIN_19p13.3"; locus "HARLEQUIN_19p13.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0158"; repClass "LTR"; repEnd "2698"; repFamily "ERV1"; repLeft "-4198"; repStart "1400"; ### ERVLB4_19p13.3 ### chr19 rmsk gene 6646056 6647473 . + . gene_id "ERVLB4_19p13.3"; transcript_id "ERVLB4_19p13.3"; locus "ERVLB4_19p13.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1651"; model_cov "668"; model_pct "11.7"; chr19 rmsk exon 6646056 6646126 259 + . gene_id "ERVLB4_19p13.3"; transcript_id "ERVLB4_19p13.3"; locus "ERVLB4_19p13.3"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1651"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "398"; chr19 rmsk exon 6646127 6646153 3594 + . gene_id "ERVLB4_19p13.3"; transcript_id "ERVLB4_19p13.3"; locus "ERVLB4_19p13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1651"; repClass "LTR"; repEnd "27"; repFamily "ERVL"; repLeft "-5687"; repStart "1"; chr19 rmsk exon 6646775 6647423 3594 + . gene_id "ERVLB4_19p13.3"; transcript_id "ERVLB4_19p13.3"; locus "ERVLB4_19p13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1651"; repClass "LTR"; repEnd "670"; repFamily "ERVL"; repLeft "-5044"; repStart "28"; chr19 rmsk exon 6647424 6647473 298 + . gene_id "ERVLB4_19p13.3"; transcript_id "ERVLB4_19p13.3"; locus "ERVLB4_19p13.3"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1651"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-2"; repStart "413"; ### HERVS71_19p13.3 ### chr19 rmsk gene 6656135 6661723 . - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0044"; model_cov "3351"; model_pct "37.3"; chr19 rmsk exon 6656135 6656642 3243 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr19 rmsk exon 6656643 6657126 11891 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8427"; repStart "-69"; chr19 rmsk exon 6657425 6657891 11891 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7961"; repStart "-552"; chr19 rmsk exon 6658200 6659341 11891 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "7960"; repFamily "ERV1"; repLeft "6846"; repStart "-1018"; chr19 rmsk exon 6659639 6659801 819 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "1945"; repFamily "ERV1"; repLeft "1762"; repStart "-7033"; chr19 rmsk exon 6659780 6659871 325 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "1486"; repFamily "ERV1"; repLeft "1401"; repStart "-7492"; chr19 rmsk exon 6660236 6661193 4492 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "1049"; repFamily "ERV1"; repLeft "27"; repStart "-7929"; chr19 rmsk exon 6661215 6661723 3257 - . gene_id "HERVS71_19p13.3"; transcript_id "HERVS71_19p13.3"; locus "HERVS71_19p13.3"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0044"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML6_19p13.2a ### chr19 rmsk gene 7779737 7781930 . + . gene_id "HML6_19p13.2a"; transcript_id "HML6_19p13.2a"; locus "HML6_19p13.2a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0077"; model_cov "1623"; model_pct "22.5"; chr19 rmsk exon 7779737 7780179 2757 + . gene_id "HML6_19p13.2a"; transcript_id "HML6_19p13.2a"; locus "HML6_19p13.2a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0077"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 7780218 7781752 6408 + . gene_id "HML6_19p13.2a"; transcript_id "HML6_19p13.2a"; locus "HML6_19p13.2a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0077"; repClass "LTR"; repEnd "1624"; repFamily "ERVK"; repLeft "-5578"; repStart "1"; chr19 rmsk exon 7781753 7781930 873 + . gene_id "HML6_19p13.2a"; transcript_id "HML6_19p13.2a"; locus "HML6_19p13.2a"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0077"; repClass "LTR"; repEnd "382"; repFamily "ERVK"; repLeft "-50"; repStart "183"; ### HERVK14C_19p13.2 ### chr19 rmsk gene 7793643 7796044 . - . gene_id "HERVK14C_19p13.2"; transcript_id "HERVK14C_19p13.2"; locus "HERVK14C_19p13.2"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0025"; model_cov "1807"; model_pct "24.3"; chr19 rmsk exon 7793643 7793710 1420 - . gene_id "HERVK14C_19p13.2"; transcript_id "HERVK14C_19p13.2"; locus "HERVK14C_19p13.2"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0025"; repClass "LTR"; repEnd "75"; repFamily "ERVK"; repLeft "5"; repStart "-512"; chr19 rmsk exon 7793728 7794015 8650 - . gene_id "HERVK14C_19p13.2"; transcript_id "HERVK14C_19p13.2"; locus "HERVK14C_19p13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0025"; repClass "LTR"; repEnd "7409"; repFamily "ERVK"; repLeft "7110"; repStart "-25"; chr19 rmsk exon 7794212 7794882 8650 - . gene_id "HERVK14C_19p13.2"; transcript_id "HERVK14C_19p13.2"; locus "HERVK14C_19p13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0025"; repClass "LTR"; repEnd "7109"; repFamily "ERVK"; repLeft "6446"; repStart "-325"; chr19 rmsk exon 7795200 7796044 8650 - . gene_id "HERVK14C_19p13.2"; transcript_id "HERVK14C_19p13.2"; locus "HERVK14C_19p13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0025"; repClass "LTR"; repEnd "6445"; repFamily "ERVK"; repLeft "5600"; repStart "-989"; ### HERVKC4_19p13.2 ### chr19 rmsk gene 7796061 7801046 . - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0021"; model_cov "3563"; model_pct "67.7"; chr19 rmsk exon 7796061 7796913 5460 - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0021"; repClass "LTR"; repEnd "3528"; repFamily "ERVK"; repLeft "2738"; repStart "-1734"; chr19 rmsk exon 7797222 7797999 14008 - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0021"; repClass "LTR"; repEnd "2778"; repFamily "ERVK"; repLeft "2020"; repStart "-2484"; chr19 rmsk exon 7798294 7798900 14008 - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0021"; repClass "LTR"; repEnd "2019"; repFamily "ERVK"; repLeft "1425"; repStart "-3243"; chr19 rmsk exon 7799205 7800625 14008 - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0021"; repClass "LTR"; repEnd "1424"; repFamily "ERVK"; repLeft "96"; repStart "-3838"; chr19 rmsk exon 7800935 7801046 14008 - . gene_id "HERVKC4_19p13.2"; transcript_id "HERVKC4_19p13.2"; locus "HERVKC4_19p13.2"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0021"; repClass "LTR"; repEnd "95"; repFamily "ERVK"; repLeft "2"; repStart "-5167"; ### LTR19_19p13.2a ### chr19 rmsk gene 8033232 8035812 . - . gene_id "LTR19_19p13.2a"; transcript_id "LTR19_19p13.2a"; locus "LTR19_19p13.2a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0052"; model_cov "1228"; model_pct "22.0"; chr19 rmsk exon 8033232 8033694 3817 - . gene_id "LTR19_19p13.2a"; transcript_id "LTR19_19p13.2a"; locus "LTR19_19p13.2a"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0052"; repClass "LTR"; repEnd "440"; repFamily "ERV1"; repLeft "1"; repStart "-140"; chr19 rmsk exon 8034201 8034576 3242 - . gene_id "LTR19_19p13.2a"; transcript_id "LTR19_19p13.2a"; locus "LTR19_19p13.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0052"; repClass "LTR"; repEnd "5247"; repFamily "ERV1"; repLeft "4868"; repStart "-339"; chr19 rmsk exon 8034874 8035230 3460 - . gene_id "LTR19_19p13.2a"; transcript_id "LTR19_19p13.2a"; locus "LTR19_19p13.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0052"; repClass "LTR"; repEnd "4867"; repFamily "ERV1"; repLeft "4287"; repStart "-719"; chr19 rmsk exon 8035538 8035812 3460 - . gene_id "LTR19_19p13.2a"; transcript_id "LTR19_19p13.2a"; locus "LTR19_19p13.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0052"; repClass "LTR"; repEnd "4286"; repFamily "ERV1"; repLeft "4017"; repStart "-1300"; ### HERV9_19p13.2 ### chr19 rmsk gene 9314080 9320919 . - . gene_id "HERV9_19p13.2"; transcript_id "HERV9_19p13.2"; locus "HERV9_19p13.2"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0178"; model_cov "6097"; model_pct "72.3"; chr19 rmsk exon 9314080 9314504 2901 - . gene_id "HERV9_19p13.2"; transcript_id "HERV9_19p13.2"; locus "HERV9_19p13.2"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0178"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 9314510 9316092 12647 - . gene_id "HERV9_19p13.2"; transcript_id "HERV9_19p13.2"; locus "HERV9_19p13.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0178"; repClass "LTR"; repEnd "8431"; repFamily "ERV1"; repLeft "6834"; repStart "-5"; chr19 rmsk exon 9316087 9319700 36749 - . gene_id "HERV9_19p13.2"; transcript_id "HERV9_19p13.2"; locus "HERV9_19p13.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0178"; repClass "LTR"; repEnd "6155"; repFamily "ERV1"; repLeft "2601"; repStart "-2281"; chr19 rmsk exon 9319964 9320919 36749 - . gene_id "HERV9_19p13.2"; transcript_id "HERV9_19p13.2"; locus "HERV9_19p13.2"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0178"; repClass "LTR"; repEnd "2600"; repFamily "ERV1"; repLeft "1654"; repStart "-5836"; ### HERVH_19p13.2a ### chr19 rmsk gene 9364148 9366007 . - . gene_id "HERVH_19p13.2a"; transcript_id "HERVH_19p13.2a"; locus "HERVH_19p13.2a"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_1143"; model_cov "2019"; model_pct "26.2"; chr19 rmsk exon 9364148 9365239 7697 - . gene_id "HERVH_19p13.2a"; transcript_id "HERVH_19p13.2a"; locus "HERVH_19p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1143"; repClass "LTR"; repEnd "7313"; repFamily "ERV1"; repLeft "6209"; repStart "-400"; chr19 rmsk exon 9365233 9366007 3233 - . gene_id "HERVH_19p13.2a"; transcript_id "HERVH_19p13.2a"; locus "HERVH_19p13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1143"; repClass "LTR"; repEnd "919"; repFamily "ERV1"; repLeft "4"; repStart "-6794"; ### ERVLE_19p13.2a ### chr19 rmsk gene 9422696 9424849 . + . gene_id "ERVLE_19p13.2a"; transcript_id "ERVLE_19p13.2a"; locus "ERVLE_19p13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3426"; model_cov "1922"; model_pct "33.9"; chr19 rmsk exon 9422696 9423713 4219 + . gene_id "ERVLE_19p13.2a"; transcript_id "ERVLE_19p13.2a"; locus "ERVLE_19p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3426"; repClass "LTR"; repEnd "4694"; repFamily "ERVL"; repLeft "-973"; repStart "3614"; chr19 rmsk exon 9424014 9424849 4219 + . gene_id "ERVLE_19p13.2a"; transcript_id "ERVLE_19p13.2a"; locus "ERVLE_19p13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3426"; repClass "LTR"; repEnd "5537"; repFamily "ERVL"; repLeft "-130"; repStart "4695"; ### HERVL74_19p13.2a ### chr19 rmsk gene 9426684 9430559 . + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0108"; model_cov "2892"; model_pct "50.9"; chr19 rmsk exon 9426684 9427318 9545 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "1856"; repFamily "ERVL"; repLeft "-3829"; repStart "1203"; chr19 rmsk exon 9427627 9428905 9545 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "3152"; repFamily "ERVL"; repLeft "-2533"; repStart "1857"; chr19 rmsk exon 9429034 9429231 9545 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "-2348"; repStart "3153"; chr19 rmsk exon 9429227 9429371 916 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "-2042"; repStart "3499"; chr19 rmsk exon 9429466 9429902 1575 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "5059"; repFamily "ERVL"; repLeft "-626"; repStart "4589"; chr19 rmsk exon 9430425 9430559 1575 + . gene_id "HERVL74_19p13.2a"; transcript_id "HERVL74_19p13.2a"; locus "HERVL74_19p13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0108"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "-479"; repStart "5060"; ### HML3_19p13.2a ### chr19 rmsk gene 9453904 9462598 . + . gene_id "HML3_19p13.2a"; transcript_id "HML3_19p13.2a"; locus "HML3_19p13.2a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0211"; model_cov "7032"; model_pct "100.0"; chr19 rmsk exon 9453904 9454392 2626 + . gene_id "HML3_19p13.2a"; transcript_id "HML3_19p13.2a"; locus "HML3_19p13.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0211"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 9454393 9459482 33559 + . gene_id "HML3_19p13.2a"; transcript_id "HML3_19p13.2a"; locus "HML3_19p13.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0211"; repClass "LTR"; repEnd "4889"; repFamily "ERVK"; repLeft "-1132"; repStart "1"; chr19 rmsk exon 9459995 9462119 3966 + . gene_id "HML3_19p13.2a"; transcript_id "HML3_19p13.2a"; locus "HML3_19p13.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0211"; repClass "LTR"; repEnd "5924"; repFamily "ERVK"; repLeft "-97"; repStart "3780"; chr19 rmsk exon 9462120 9462598 2895 + . gene_id "HML3_19p13.2a"; transcript_id "HML3_19p13.2a"; locus "HML3_19p13.2a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0211"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_19p13.2 ### chr19 rmsk gene 9463342 9464637 . - . gene_id "HERVL40_19p13.2"; transcript_id "HERVL40_19p13.2"; locus "HERVL40_19p13.2"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0420"; model_cov "992"; model_pct "17.9"; chr19 rmsk exon 9463342 9463680 1829 - . gene_id "HERVL40_19p13.2"; transcript_id "HERVL40_19p13.2"; locus "HERVL40_19p13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0420"; repClass "LTR"; repEnd "5368"; repFamily "ERVL"; repLeft "5044"; repStart "-162"; chr19 rmsk exon 9463982 9464637 1829 - . gene_id "HERVL40_19p13.2"; transcript_id "HERVL40_19p13.2"; locus "HERVL40_19p13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0420"; repClass "LTR"; repEnd "5043"; repFamily "ERVL"; repLeft "4375"; repStart "-487"; ### ERVLE_19p13.2b ### chr19 rmsk gene 9487877 9493848 . + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3427"; model_cov "2749"; model_pct "48.5"; chr19 rmsk exon 9487877 9487952 691 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "-5056"; repStart "536"; chr19 rmsk exon 9488377 9488750 691 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "1001"; repFamily "ERVL"; repLeft "-4666"; repStart "612"; chr19 rmsk exon 9490046 9490508 1071 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "1586"; repFamily "ERVL"; repLeft "-4081"; repStart "1114"; chr19 rmsk exon 9490861 9491113 441 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "2782"; repFamily "ERVL"; repLeft "-2885"; repStart "2416"; chr19 rmsk exon 9491418 9491483 441 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "2846"; repFamily "ERVL"; repLeft "-2821"; repStart "2783"; chr19 rmsk exon 9491846 9491956 522 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "4261"; repFamily "ERVL"; repLeft "-1406"; repStart "4149"; chr19 rmsk exon 9492234 9492363 568 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "4322"; repFamily "ERVL"; repLeft "-1345"; repStart "4194"; chr19 rmsk exon 9492439 9493362 2159 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "5288"; repFamily "ERVL"; repLeft "-379"; repStart "4331"; chr19 rmsk exon 9493656 9493848 2159 + . gene_id "ERVLE_19p13.2b"; transcript_id "ERVLE_19p13.2b"; locus "ERVLE_19p13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3427"; repClass "LTR"; repEnd "5476"; repFamily "ERVL"; repLeft "-191"; repStart "5289"; ### HML6_19p13.2b ### chr19 rmsk gene 9508031 9515060 . - . gene_id "HML6_19p13.2b"; transcript_id "HML6_19p13.2b"; locus "HML6_19p13.2b"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0078"; model_cov "5895"; model_pct "81.9"; chr19 rmsk exon 9508031 9508462 3164 - . gene_id "HML6_19p13.2b"; transcript_id "HML6_19p13.2b"; locus "HML6_19p13.2b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0078"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 9508465 9510889 16831 - . gene_id "HML6_19p13.2b"; transcript_id "HML6_19p13.2b"; locus "HML6_19p13.2b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0078"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "4762"; repStart "-2"; chr19 rmsk exon 9511237 9514634 19712 - . gene_id "HML6_19p13.2b"; transcript_id "HML6_19p13.2b"; locus "HML6_19p13.2b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0078"; repClass "LTR"; repEnd "3458"; repFamily "ERVK"; repLeft "1"; repStart "-3744"; chr19 rmsk exon 9514636 9515060 3236 - . gene_id "HML6_19p13.2b"; transcript_id "HML6_19p13.2b"; locus "HML6_19p13.2b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0078"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "5"; repStart "0"; ### HERVH_19p13.2b ### chr19 rmsk gene 9539343 9550570 . + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1144"; model_cov "7254"; model_pct "94.0"; chr19 rmsk exon 9539343 9539771 2639 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 9539772 9540293 1132 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "-7191"; repStart "1"; chr19 rmsk exon 9540272 9540733 19374 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "1291"; repFamily "ERV1"; repLeft "-6422"; repStart "808"; chr19 rmsk exon 9541890 9546922 19374 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "6223"; repFamily "ERV1"; repLeft "-1490"; repStart "1292"; chr19 rmsk exon 9547144 9547647 2982 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "6716"; repFamily "ERV1"; repLeft "-997"; repStart "6213"; chr19 rmsk exon 9549318 9549546 1454 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6714"; chr19 rmsk exon 9549543 9549591 313 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7665"; chr19 rmsk exon 9549592 9550125 3186 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "7706"; repFamily "ERV1"; repLeft "-7"; repStart "7172"; chr19 rmsk exon 9550133 9550570 2831 + . gene_id "HERVH_19p13.2b"; transcript_id "HERVH_19p13.2b"; locus "HERVH_19p13.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1144"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_19p13.2c ### chr19 rmsk gene 9570284 9571752 . + . gene_id "ERVLE_19p13.2c"; transcript_id "ERVLE_19p13.2c"; locus "ERVLE_19p13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3428"; model_cov "843"; model_pct "14.9"; chr19 rmsk exon 9570284 9570558 1305 + . gene_id "ERVLE_19p13.2c"; transcript_id "ERVLE_19p13.2c"; locus "ERVLE_19p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3428"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-4278"; repStart "1102"; chr19 rmsk exon 9570881 9571095 1305 + . gene_id "ERVLE_19p13.2c"; transcript_id "ERVLE_19p13.2c"; locus "ERVLE_19p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3428"; repClass "LTR"; repEnd "1592"; repFamily "ERVL"; repLeft "-4075"; repStart "1390"; chr19 rmsk exon 9571415 9571752 881 + . gene_id "ERVLE_19p13.2c"; transcript_id "ERVLE_19p13.2c"; locus "ERVLE_19p13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3428"; repClass "LTR"; repEnd "2710"; repFamily "ERVL"; repLeft "-2957"; repStart "2356"; ### HERVIP10F_19p13.2a ### chr19 rmsk gene 9587772 9597349 . - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0107"; model_cov "7734"; model_pct "100.0"; chr19 rmsk exon 9587772 9588056 2318 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "224"; repStart "0"; chr19 rmsk exon 9588051 9588157 806 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "107"; repFamily "ERV1"; repLeft "1"; repStart "-404"; chr19 rmsk exon 9588158 9588748 63822 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "7159"; repStart "0"; chr19 rmsk exon 9589043 9592261 63822 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "7158"; repFamily "ERV1"; repLeft "3939"; repStart "-579"; chr19 rmsk exon 9592561 9596527 63822 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "3938"; repFamily "ERV1"; repLeft "1"; repStart "-3799"; chr19 rmsk exon 9596528 9596571 3127 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "469"; repStart "0"; chr19 rmsk exon 9596881 9597349 3127 - . gene_id "HERVIP10F_19p13.2a"; transcript_id "HERVIP10F_19p13.2a"; locus "HERVIP10F_19p13.2a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0107"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "1"; repStart "-43"; ### HERVH_19p13.2c ### chr19 rmsk gene 9635997 9642215 . - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1145"; model_cov "5364"; model_pct "69.5"; chr19 rmsk exon 9635997 9636345 1594 - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1145"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "130"; repStart "0"; chr19 rmsk exon 9636442 9639986 11213 - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1145"; repClass "LTR"; repEnd "5362"; repFamily "ERV1"; repLeft "1892"; repStart "-2351"; chr19 rmsk exon 9639985 9641734 3396 - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1145"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "1091"; repStart "-4728"; chr19 rmsk exon 9641765 9642066 1535 - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1145"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "163"; repStart "0"; chr19 rmsk exon 9642123 9642215 292 - . gene_id "HERVH_19p13.2c"; transcript_id "HERVH_19p13.2c"; locus "HERVH_19p13.2c"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1145"; repClass "LTR"; repEnd "287"; repFamily "ERV1"; repLeft "127"; repStart "-185"; ### ERVLE_19p13.2d ### chr19 rmsk gene 9671526 9671970 . + . gene_id "ERVLE_19p13.2d"; transcript_id "ERVLE_19p13.2d"; locus "ERVLE_19p13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3429"; model_cov "589"; model_pct "10.4"; chr19 rmsk exon 9671526 9671970 973 + . gene_id "ERVLE_19p13.2d"; transcript_id "ERVLE_19p13.2d"; locus "ERVLE_19p13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3429"; repClass "LTR"; repEnd "3404"; repFamily "ERVL"; repLeft "-2263"; repStart "2815"; ### HARLEQUIN_19p13.2 ### chr19 rmsk gene 9703073 9708483 . + . gene_id "HARLEQUIN_19p13.2"; transcript_id "HARLEQUIN_19p13.2"; locus "HARLEQUIN_19p13.2"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0159"; model_cov "5107"; model_pct "74.1"; chr19 rmsk exon 9703073 9703931 5964 + . gene_id "HARLEQUIN_19p13.2"; transcript_id "HARLEQUIN_19p13.2"; locus "HARLEQUIN_19p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0159"; repClass "LTR"; repEnd "1104"; repFamily "ERV1"; repLeft "-5792"; repStart "263"; chr19 rmsk exon 9703912 9707920 29513 + . gene_id "HARLEQUIN_19p13.2"; transcript_id "HARLEQUIN_19p13.2"; locus "HARLEQUIN_19p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0159"; repClass "LTR"; repEnd "5710"; repFamily "ERV1"; repLeft "-1186"; repStart "1561"; chr19 rmsk exon 9707915 9708035 666 + . gene_id "HARLEQUIN_19p13.2"; transcript_id "HARLEQUIN_19p13.2"; locus "HARLEQUIN_19p13.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0159"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6779"; chr19 rmsk exon 9708037 9708483 2376 + . gene_id "HARLEQUIN_19p13.2"; transcript_id "HARLEQUIN_19p13.2"; locus "HARLEQUIN_19p13.2"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0159"; repClass "LTR"; repEnd "452"; repFamily "ERV1"; repLeft "-11"; repStart "4"; ### HML3_19p13.2b ### chr19 rmsk gene 9711509 9717966 . - . gene_id "HML3_19p13.2b"; transcript_id "HML3_19p13.2b"; locus "HML3_19p13.2b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0212"; model_cov "5474"; model_pct "90.9"; chr19 rmsk exon 9711509 9712021 4303 - . gene_id "HML3_19p13.2b"; transcript_id "HML3_19p13.2b"; locus "HML3_19p13.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0212"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 9712022 9716915 40634 - . gene_id "HML3_19p13.2b"; transcript_id "HML3_19p13.2b"; locus "HML3_19p13.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0212"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1126"; repStart "0"; chr19 rmsk exon 9716918 9717453 3228 - . gene_id "HML3_19p13.2b"; transcript_id "HML3_19p13.2b"; locus "HML3_19p13.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0212"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chr19 rmsk exon 9717454 9717966 4356 - . gene_id "HML3_19p13.2b"; transcript_id "HML3_19p13.2b"; locus "HML3_19p13.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0212"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_19p13.2b ### chr19 rmsk gene 9718757 9722354 . + . gene_id "HERVIP10F_19p13.2b"; transcript_id "HERVIP10F_19p13.2b"; locus "HERVIP10F_19p13.2b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0108"; model_cov "3001"; model_pct "38.8"; chr19 rmsk exon 9718757 9718847 12422 + . gene_id "HERVIP10F_19p13.2b"; transcript_id "HERVIP10F_19p13.2b"; locus "HERVIP10F_19p13.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0108"; repClass "LTR"; repEnd "4821"; repFamily "ERV1"; repLeft "-2916"; repStart "4730"; chr19 rmsk exon 9718912 9721844 12422 + . gene_id "HERVIP10F_19p13.2b"; transcript_id "HERVIP10F_19p13.2b"; locus "HERVIP10F_19p13.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0108"; repClass "LTR"; repEnd "7732"; repFamily "ERV1"; repLeft "-5"; repStart "4822"; chr19 rmsk exon 9722050 9722354 1078 + . gene_id "HERVIP10F_19p13.2b"; transcript_id "HERVIP10F_19p13.2b"; locus "HERVIP10F_19p13.2b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0108"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "191"; ### HERVEA_19p13.2 ### chr19 rmsk gene 9725353 9730899 . - . gene_id "HERVEA_19p13.2"; transcript_id "HERVEA_19p13.2"; locus "HERVEA_19p13.2"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0086"; model_cov "5098"; model_pct "65.0"; chr19 rmsk exon 9725353 9730427 42427 - . gene_id "HERVEA_19p13.2"; transcript_id "HERVEA_19p13.2"; locus "HERVEA_19p13.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0086"; repClass "LTR"; repEnd "5099"; repFamily "ERV1"; repLeft "1"; repStart "-2748"; chr19 rmsk exon 9730429 9730899 3322 - . gene_id "HERVEA_19p13.2"; transcript_id "HERVEA_19p13.2"; locus "HERVEA_19p13.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0086"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL74_19p13.2b ### chr19 rmsk gene 9737195 9740103 . - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0109"; model_cov "1241"; model_pct "21.8"; chr19 rmsk exon 9737195 9737521 893 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "4933"; repFamily "ERVL"; repLeft "4625"; repStart "-752"; chr19 rmsk exon 9737827 9737871 893 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "4624"; repFamily "ERVL"; repLeft "4589"; repStart "-1061"; chr19 rmsk exon 9737867 9737983 541 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "4016"; repFamily "ERVL"; repLeft "3897"; repStart "-1669"; chr19 rmsk exon 9738647 9738787 701 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "3486"; repStart "-2060"; chr19 rmsk exon 9738778 9739279 2297 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "3339"; repFamily "ERVL"; repLeft "2840"; repStart "-2346"; chr19 rmsk exon 9739961 9740103 680 - . gene_id "HERVL74_19p13.2b"; transcript_id "HERVL74_19p13.2b"; locus "HERVL74_19p13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0109"; repClass "LTR"; repEnd "1845"; repFamily "ERVL"; repLeft "1704"; repStart "-3840"; ### HERVH_19p13.2d ### chr19 rmsk gene 9741826 9751972 . + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1146"; model_cov "7698"; model_pct "99.8"; chr19 rmsk exon 9741826 9742178 1551 + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1146"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "117"; chr19 rmsk exon 9742203 9747263 17808 + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1146"; repClass "LTR"; repEnd "4968"; repFamily "ERV1"; repLeft "-2745"; repStart "24"; chr19 rmsk exon 9748660 9751420 14673 + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1146"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "4959"; chr19 rmsk exon 9751456 9751668 364 + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1146"; repClass "LTR"; repEnd "276"; repFamily "ERV1"; repLeft "-188"; repStart "118"; chr19 rmsk exon 9751643 9751972 1466 + . gene_id "HERVH_19p13.2d"; transcript_id "HERVH_19p13.2d"; locus "HERVH_19p13.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1146"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "131"; ### HERVH_19p13.2e ### chr19 rmsk gene 10028654 10033958 . - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1147"; model_cov "3344"; model_pct "43.4"; chr19 rmsk exon 10028654 10029074 1799 - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1147"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "24"; repStart "0"; chr19 rmsk exon 10029158 10030207 4141 - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1147"; repClass "LTR"; repEnd "7695"; repFamily "ERV1"; repLeft "6640"; repStart "-18"; chr19 rmsk exon 10030209 10031775 5329 - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1147"; repClass "LTR"; repEnd "3988"; repFamily "ERV1"; repLeft "2702"; repStart "-3725"; chr19 rmsk exon 10032085 10033236 5329 - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1147"; repClass "LTR"; repEnd "1599"; repFamily "ERV1"; repLeft "596"; repStart "-6114"; chr19 rmsk exon 10033539 10033958 1770 - . gene_id "HERVH_19p13.2e"; transcript_id "HERVH_19p13.2e"; locus "HERVH_19p13.2e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1147"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "11"; repStart "-5"; ### HML6_19p13.2c ### chr19 rmsk gene 11621351 11627046 . - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0079"; model_cov "3803"; model_pct "52.8"; chr19 rmsk exon 11621351 11621778 2759 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "422"; repFamily "ERVK"; repLeft "1"; repStart "-62"; chr19 rmsk exon 11621779 11621872 700 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "7109"; repStart "0"; chr19 rmsk exon 11621892 11622560 4363 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "4644"; repStart "-1885"; chr19 rmsk exon 11622560 11622748 1532 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "4078"; repStart "-2936"; chr19 rmsk exon 11622752 11622799 5939 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "2855"; repFamily "ERVK"; repLeft "2813"; repStart "-4347"; chr19 rmsk exon 11623071 11623534 5939 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "2812"; repFamily "ERVK"; repLeft "2367"; repStart "-4390"; chr19 rmsk exon 11623841 11624930 5939 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "2366"; repFamily "ERVK"; repLeft "1339"; repStart "-4836"; chr19 rmsk exon 11625252 11626526 5939 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "1338"; repFamily "ERVK"; repLeft "3"; repStart "-5864"; chr19 rmsk exon 11626547 11627046 3127 - . gene_id "HML6_19p13.2c"; transcript_id "HML6_19p13.2c"; locus "HML6_19p13.2c"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0079"; repClass "LTR"; repEnd "480"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### MER101_19p13.2 ### chr19 rmsk gene 11686867 11687964 . + . gene_id "MER101_19p13.2"; transcript_id "MER101_19p13.2"; locus "MER101_19p13.2"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0386"; model_cov "853"; model_pct "12.8"; chr19 rmsk exon 11686867 11687687 4854 + . gene_id "MER101_19p13.2"; transcript_id "MER101_19p13.2"; locus "MER101_19p13.2"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0386"; repClass "LTR"; repEnd "6621"; repFamily "ERV1"; repLeft "-18"; repStart "5768"; chr19 rmsk exon 11687688 11687964 1258 + . gene_id "MER101_19p13.2"; transcript_id "MER101_19p13.2"; locus "MER101_19p13.2"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0386"; repClass "LTR"; repEnd "368"; repFamily "ERV1"; repLeft "-106"; repStart "23"; ### HML6_19p13.2d ### chr19 rmsk gene 11853282 11860984 . - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0080"; model_cov "6162"; model_pct "85.6"; chr19 rmsk exon 11853282 11853711 3022 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 11853714 11854477 30467 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6398"; repStart "-2"; chr19 rmsk exon 11854769 11858177 30467 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "6397"; repFamily "ERVK"; repLeft "2986"; repStart "-805"; chr19 rmsk exon 11858484 11858928 30467 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "2985"; repFamily "ERVK"; repLeft "2540"; repStart "-4217"; chr19 rmsk exon 11858923 11860185 9006 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "1501"; repFamily "ERVK"; repLeft "233"; repStart "-5701"; chr19 rmsk exon 11860306 11860560 1202 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "237"; repFamily "ERVK"; repLeft "1"; repStart "-6965"; chr19 rmsk exon 11860562 11860984 3164 - . gene_id "HML6_19p13.2d"; transcript_id "HML6_19p13.2d"; locus "HML6_19p13.2d"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0080"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HERVI_19p13.2 ### chr19 rmsk gene 11880363 11883480 . + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0036"; model_cov "1979"; model_pct "25.4"; chr19 rmsk exon 11880363 11880887 3946 + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0036"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 11880890 11881977 2223 + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0036"; repClass "LTR"; repEnd "1003"; repFamily "ERV1"; repLeft "-6782"; repStart "2"; chr19 rmsk exon 11882682 11883250 1544 + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0036"; repClass "LTR"; repEnd "4639"; repFamily "ERV1"; repLeft "-3146"; repStart "3903"; chr19 rmsk exon 11883270 11883419 447 + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0036"; repClass "LTR"; repEnd "4927"; repFamily "ERV1"; repLeft "-2858"; repStart "4779"; chr19 rmsk exon 11883389 11883480 290 + . gene_id "HERVI_19p13.2"; transcript_id "HERVI_19p13.2"; locus "HERVI_19p13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0036"; repClass "LTR"; repEnd "5425"; repFamily "ERV1"; repLeft "-2360"; repStart "5331"; ### HERVIP10FH_19p13.2 ### chr19 rmsk gene 11883491 11886834 . + . gene_id "HERVIP10FH_19p13.2"; transcript_id "HERVIP10FH_19p13.2"; locus "HERVIP10FH_19p13.2"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0168"; model_cov "1750"; model_pct "34.3"; chr19 rmsk exon 11883491 11885229 7917 + . gene_id "HERVIP10FH_19p13.2"; transcript_id "HERVIP10FH_19p13.2"; locus "HERVIP10FH_19p13.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0168"; repClass "LTR"; repEnd "4635"; repFamily "ERV1"; repLeft "-467"; repStart "3351"; chr19 rmsk exon 11885526 11885997 7917 + . gene_id "HERVIP10FH_19p13.2"; transcript_id "HERVIP10FH_19p13.2"; locus "HERVIP10FH_19p13.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0168"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "4636"; chr19 rmsk exon 11885998 11886023 3550 + . gene_id "HERVIP10FH_19p13.2"; transcript_id "HERVIP10FH_19p13.2"; locus "HERVIP10FH_19p13.2"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10FH-int_0168"; repClass "LTR"; repEnd "26"; repFamily "ERV1"; repLeft "-497"; repStart "1"; chr19 rmsk exon 11886327 11886834 3550 + . gene_id "HERVIP10FH_19p13.2"; transcript_id "HERVIP10FH_19p13.2"; locus "HERVIP10FH_19p13.2"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10FH-int_0168"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "0"; repStart "27"; ### HERVE_19p13.2 ### chr19 rmsk gene 11942460 11946832 . - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0153"; model_cov "3978"; model_pct "50.9"; chr19 rmsk exon 11942460 11942907 2432 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 11942908 11943485 3955 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "7235"; repStart "-1"; chr19 rmsk exon 11943478 11945035 10897 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "6104"; repFamily "ERV1"; repLeft "4526"; repStart "-1709"; chr19 rmsk exon 11945032 11945377 2405 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "3704"; repFamily "ERV1"; repLeft "3354"; repStart "-4109"; chr19 rmsk exon 11945373 11946210 5450 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "2877"; repFamily "ERV1"; repLeft "2042"; repStart "-4936"; chr19 rmsk exon 11946191 11946832 4150 - . gene_id "HERVE_19p13.2"; transcript_id "HERVE_19p13.2"; locus "HERVE_19p13.2"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0153"; repClass "LTR"; repEnd "1118"; repFamily "ERV1"; repLeft "480"; repStart "-6695"; ### HML3_19p13.2c ### chr19 rmsk gene 12022006 12027814 . + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0213"; model_cov "4910"; model_pct "81.5"; chr19 rmsk exon 12022006 12022511 3881 + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0213"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 12022512 12023071 4097 + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0213"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chr19 rmsk exon 12023070 12024463 10999 + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0213"; repClass "LTR"; repEnd "2850"; repFamily "ERVK"; repLeft "-3171"; repStart "1436"; chr19 rmsk exon 12024462 12027348 23875 + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0213"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3104"; chr19 rmsk exon 12027357 12027814 3297 + . gene_id "HML3_19p13.2c"; transcript_id "HML3_19p13.2c"; locus "HML3_19p13.2c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0213"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "34"; ### HML3_19p13.2d ### chr19 rmsk gene 12098326 12102949 . - . gene_id "HML3_19p13.2d"; transcript_id "HML3_19p13.2d"; locus "HML3_19p13.2d"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0214"; model_cov "4304"; model_pct "71.5"; chr19 rmsk exon 12098326 12098841 4324 - . gene_id "HML3_19p13.2d"; transcript_id "HML3_19p13.2d"; locus "HML3_19p13.2d"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0214"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 12098842 12101000 15966 - . gene_id "HML3_19p13.2d"; transcript_id "HML3_19p13.2d"; locus "HML3_19p13.2d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0214"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3723"; repStart "0"; chr19 rmsk exon 12101001 12102949 21058 - . gene_id "HML3_19p13.2d"; transcript_id "HML3_19p13.2d"; locus "HML3_19p13.2d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0214"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "792"; repStart "-3223"; ### HML3_19p13.2e ### chr19 rmsk gene 12103011 12104292 . - . gene_id "HML3_19p13.2e"; transcript_id "HML3_19p13.2e"; locus "HML3_19p13.2e"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0215"; model_cov "790"; model_pct "13.1"; chr19 rmsk exon 12103011 12103776 21058 - . gene_id "HML3_19p13.2e"; transcript_id "HML3_19p13.2e"; locus "HML3_19p13.2e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0215"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2008"; repStart "-3223"; chr19 rmsk exon 12103777 12104292 4429 - . gene_id "HML3_19p13.2e"; transcript_id "HML3_19p13.2e"; locus "HML3_19p13.2e"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0215"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR19_19p13.2b ### chr19 rmsk gene 12224330 12228688 . - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0053"; model_cov "4622"; model_pct "82.7"; chr19 rmsk exon 12224330 12224357 2482 - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0053"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "461"; repStart "0"; chr19 rmsk exon 12224672 12225103 2482 - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0053"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "2"; repStart "-26"; chr19 rmsk exon 12225104 12226784 20164 - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0053"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "1859"; repStart "-524"; chr19 rmsk exon 12227083 12227318 20164 - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0053"; repClass "LTR"; repEnd "3690"; repFamily "ERV1"; repLeft "3445"; repStart "-1896"; chr19 rmsk exon 12227616 12228688 20164 - . gene_id "LTR19_19p13.2b"; transcript_id "LTR19_19p13.2b"; locus "LTR19_19p13.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0053"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "2270"; repStart "-2142"; ### LTR19_19p13.2c ### chr19 rmsk gene 12228817 12231119 . - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0054"; model_cov "1663"; model_pct "29.8"; chr19 rmsk exon 12228817 12229574 20164 - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0054"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "2612"; repStart "-2142"; chr19 rmsk exon 12229573 12229617 4674 - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0054"; repClass "LTR"; repEnd "992"; repFamily "ERV1"; repLeft "963"; repStart "-4594"; chr19 rmsk exon 12229912 12230556 4674 - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0054"; repClass "LTR"; repEnd "962"; repFamily "ERV1"; repLeft "308"; repStart "-4624"; chr19 rmsk exon 12230551 12230700 1065 - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0054"; repClass "LTR"; repEnd "149"; repFamily "ERV1"; repLeft "1"; repStart "-5437"; chr19 rmsk exon 12230701 12231119 2407 - . gene_id "LTR19_19p13.2c"; transcript_id "LTR19_19p13.2c"; locus "LTR19_19p13.2c"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0054"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML1_19p13.2 ### chr19 rmsk gene 12450589 12454543 . + . gene_id "HML1_19p13.2"; transcript_id "HML1_19p13.2"; locus "HML1_19p13.2"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0107"; model_cov "3377"; model_pct "55.4"; chr19 rmsk exon 12450589 12451187 3239 + . gene_id "HML1_19p13.2"; transcript_id "HML1_19p13.2"; locus "HML1_19p13.2"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0107"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "17"; chr19 rmsk exon 12451188 12452383 9115 + . gene_id "HML1_19p13.2"; transcript_id "HML1_19p13.2"; locus "HML1_19p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0107"; repClass "LTR"; repEnd "1199"; repFamily "ERVK"; repLeft "-4897"; repStart "1"; chr19 rmsk exon 12452383 12454543 16515 + . gene_id "HML1_19p13.2"; transcript_id "HML1_19p13.2"; locus "HML1_19p13.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0107"; repClass "LTR"; repEnd "3531"; repFamily "ERVK"; repLeft "-2565"; repStart "1352"; ### HERVL74_19p13.2c ### chr19 rmsk gene 12592915 12594954 . - . gene_id "HERVL74_19p13.2c"; transcript_id "HERVL74_19p13.2c"; locus "HERVL74_19p13.2c"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0110"; model_cov "1564"; model_pct "27.5"; chr19 rmsk exon 12592915 12593246 3295 - . gene_id "HERVL74_19p13.2c"; transcript_id "HERVL74_19p13.2c"; locus "HERVL74_19p13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0110"; repClass "LTR"; repEnd "5685"; repFamily "ERVL"; repLeft "5129"; repStart "0"; chr19 rmsk exon 12593550 12594183 3295 - . gene_id "HERVL74_19p13.2c"; transcript_id "HERVL74_19p13.2c"; locus "HERVL74_19p13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0110"; repClass "LTR"; repEnd "2999"; repFamily "ERVL"; repLeft "2287"; repStart "-2686"; chr19 rmsk exon 12594496 12594690 3295 - . gene_id "HERVL74_19p13.2c"; transcript_id "HERVL74_19p13.2c"; locus "HERVL74_19p13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0110"; repClass "LTR"; repEnd "2286"; repFamily "ERVL"; repLeft "2101"; repStart "-3399"; chr19 rmsk exon 12594851 12594954 460 - . gene_id "HERVL74_19p13.2c"; transcript_id "HERVL74_19p13.2c"; locus "HERVL74_19p13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0110"; repClass "LTR"; repEnd "1316"; repFamily "ERVL"; repLeft "1205"; repStart "-4369"; ### PABLA_19p13.2 ### chr19 rmsk gene 12598247 12600836 . + . gene_id "PABLA_19p13.2"; transcript_id "PABLA_19p13.2"; locus "PABLA_19p13.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0138"; model_cov "1453"; model_pct "29.0"; chr19 rmsk exon 12598247 12598381 1014 + . gene_id "PABLA_19p13.2"; transcript_id "PABLA_19p13.2"; locus "PABLA_19p13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0138"; repClass "LTR"; repEnd "834"; repFamily "ERV1"; repLeft "-4181"; repStart "698"; chr19 rmsk exon 12598674 12598706 1014 + . gene_id "PABLA_19p13.2"; transcript_id "PABLA_19p13.2"; locus "PABLA_19p13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0138"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "-4161"; repStart "835"; chr19 rmsk exon 12599175 12600080 8960 + . gene_id "PABLA_19p13.2"; transcript_id "PABLA_19p13.2"; locus "PABLA_19p13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0138"; repClass "LTR"; repEnd "3256"; repFamily "ERV1"; repLeft "-1759"; repStart "2400"; chr19 rmsk exon 12600390 12600836 8960 + . gene_id "PABLA_19p13.2"; transcript_id "PABLA_19p13.2"; locus "PABLA_19p13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0138"; repClass "LTR"; repEnd "3699"; repFamily "ERV1"; repLeft "-1316"; repStart "3257"; ### LTR57_19p13.12 ### chr19 rmsk gene 15604143 15605745 . - . gene_id "LTR57_19p13.12"; transcript_id "LTR57_19p13.12"; locus "LTR57_19p13.12"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0170"; model_cov "1272"; model_pct "23.8"; chr19 rmsk exon 15604143 15605349 5070 - . gene_id "LTR57_19p13.12"; transcript_id "LTR57_19p13.12"; locus "LTR57_19p13.12"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0170"; repClass "LTR"; repEnd "1588"; repFamily "ERVL"; repLeft "408"; repStart "-3755"; chr19 rmsk exon 15605650 15605745 5070 - . gene_id "LTR57_19p13.12"; transcript_id "LTR57_19p13.12"; locus "LTR57_19p13.12"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0170"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "315"; repStart "-4936"; ### HERVH_19p13.12 ### chr19 rmsk gene 15828738 15834725 . + . gene_id "HERVH_19p13.12"; transcript_id "HERVH_19p13.12"; locus "HERVH_19p13.12"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1148"; model_cov "5106"; model_pct "66.2"; chr19 rmsk exon 15828738 15829200 3697 + . gene_id "HERVH_19p13.12"; transcript_id "HERVH_19p13.12"; locus "HERVH_19p13.12"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1148"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 15829202 15829645 959 + . gene_id "HERVH_19p13.12"; transcript_id "HERVH_19p13.12"; locus "HERVH_19p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1148"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "2"; chr19 rmsk exon 15829642 15834725 10810 + . gene_id "HERVH_19p13.12"; transcript_id "HERVH_19p13.12"; locus "HERVH_19p13.12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1148"; repClass "LTR"; repEnd "5453"; repFamily "ERV1"; repLeft "-2260"; repStart "791"; ### HERV3_19p13.12 ### chr19 rmsk gene 15999206 16003857 . - . gene_id "HERV3_19p13.12"; transcript_id "HERV3_19p13.12"; locus "HERV3_19p13.12"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0066"; model_cov "4018"; model_pct "47.7"; chr19 rmsk exon 15999206 16000000 5385 - . gene_id "HERV3_19p13.12"; transcript_id "HERV3_19p13.12"; locus "HERV3_19p13.12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0066"; repClass "LTR"; repEnd "4020"; repFamily "ERV1"; repLeft "3218"; repStart "-4406"; chr19 rmsk exon 16000002 16003335 16127 - . gene_id "HERV3_19p13.12"; transcript_id "HERV3_19p13.12"; locus "HERV3_19p13.12"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0066"; repClass "LTR"; repEnd "3217"; repFamily "ERV1"; repLeft "1"; repStart "-5209"; chr19 rmsk exon 16003336 16003857 1610 - . gene_id "HERV3_19p13.12"; transcript_id "HERV3_19p13.12"; locus "HERV3_19p13.12"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0066"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_19p13.12 ### chr19 rmsk gene 16008234 16012267 . + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; category "internal"; intModel "MER4-int"; locid "MER4-int_0752"; model_cov "1794"; model_pct "27.2"; chr19 rmsk exon 16008234 16008360 1384 + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0752"; repClass "LTR"; repEnd "2576"; repFamily "ERV1"; repLeft "-4022"; repStart "2474"; chr19 rmsk exon 16008653 16008728 1384 + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0752"; repClass "LTR"; repEnd "2580"; repFamily "ERV1"; repLeft "-4018"; repStart "2577"; chr19 rmsk exon 16009048 16009326 1384 + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0752"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "-3734"; repStart "2581"; chr19 rmsk exon 16010659 16011099 3913 + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0752"; repClass "LTR"; repEnd "3849"; repFamily "ERV1"; repLeft "-2749"; repStart "3396"; chr19 rmsk exon 16011410 16012267 3913 + . gene_id "MER4_19p13.12"; transcript_id "MER4_19p13.12"; locus "MER4_19p13.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0752"; repClass "LTR"; repEnd "4803"; repFamily "ERV1"; repLeft "-1795"; repStart "3850"; ### HERVH_19p13.11 ### chr19 rmsk gene 17593566 17598095 . + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1149"; model_cov "4265"; model_pct "55.3"; chr19 rmsk exon 17593566 17593923 2395 + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1149"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 17593926 17596833 16344 + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1149"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr19 rmsk exon 17596828 17596972 865 + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1149"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 17596963 17597465 3285 + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1149"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr19 rmsk exon 17597468 17598095 4237 + . gene_id "HERVH_19p13.11"; transcript_id "HERVH_19p13.11"; locus "HERVH_19p13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1149"; repClass "LTR"; repEnd "5116"; repFamily "ERV1"; repLeft "-2597"; repStart "4488"; ### MER34B_19p13.11 ### chr19 rmsk gene 18180092 18184013 . - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0256"; model_cov "748"; model_pct "14.0"; chr19 rmsk exon 18180092 18180135 229 - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0256"; repClass "LTR"; repEnd "44"; repFamily "ERV1"; repLeft "1"; repStart "-498"; chr19 rmsk exon 18180160 18180326 661 - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0256"; repClass "LTR"; repEnd "5291"; repFamily "ERV1"; repLeft "5138"; repStart "-65"; chr19 rmsk exon 18180949 18181051 661 - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0256"; repClass "LTR"; repEnd "5137"; repFamily "ERV1"; repLeft "5039"; repStart "-219"; chr19 rmsk exon 18182087 18182347 398 - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0256"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "1913"; repStart "-3186"; chr19 rmsk exon 18183786 18184013 517 - . gene_id "MER34B_19p13.11"; transcript_id "MER34B_19p13.11"; locus "MER34B_19p13.11"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0256"; repClass "LTR"; repEnd "1684"; repFamily "ERV1"; repLeft "1444"; repStart "-3672"; ### HERV30_19p13.11 ### chr19 rmsk gene 18577591 18584685 . + . gene_id "HERV30_19p13.11"; transcript_id "HERV30_19p13.11"; locus "HERV30_19p13.11"; category "internal"; intModel "HERV30-int"; locid "HERV30-int_0025"; model_cov "5892"; model_pct "71.4"; chr19 rmsk exon 18577591 18578035 1497 + . gene_id "HERV30_19p13.11"; transcript_id "HERV30_19p13.11"; locus "HERV30_19p13.11"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0025"; repClass "LTR"; repEnd "85"; repFamily "ERV1"; repLeft "-8172"; repStart "-351"; chr19 rmsk exon 18578706 18581619 23217 + . gene_id "HERV30_19p13.11"; transcript_id "HERV30_19p13.11"; locus "HERV30_19p13.11"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0025"; repClass "LTR"; repEnd "3826"; repFamily "ERV1"; repLeft "-4431"; repStart "883"; chr19 rmsk exon 18581897 18583776 23217 + . gene_id "HERV30_19p13.11"; transcript_id "HERV30_19p13.11"; locus "HERV30_19p13.11"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0025"; repClass "LTR"; repEnd "5747"; repFamily "ERV1"; repLeft "-2510"; repStart "3827"; chr19 rmsk exon 18584075 18584685 23217 + . gene_id "HERV30_19p13.11"; transcript_id "HERV30_19p13.11"; locus "HERV30_19p13.11"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0025"; repClass "LTR"; repEnd "6341"; repFamily "ERV1"; repLeft "-1916"; repStart "5748"; ### HERVL66_19p13.11a ### chr19 rmsk gene 19700556 19701232 . - . gene_id "HERVL66_19p13.11a"; transcript_id "HERVL66_19p13.11a"; locus "HERVL66_19p13.11a"; category "internal"; intModel "HERVL66-int"; locid "HERVL66-int_0024"; model_cov "692"; model_pct "16.0"; chr19 rmsk exon 19700556 19700644 568 - . gene_id "HERVL66_19p13.11a"; transcript_id "HERVL66_19p13.11a"; locus "HERVL66_19p13.11a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0024"; repClass "LTR"; repEnd "2738"; repFamily "ERVL"; repLeft "2654"; repStart "-1591"; chr19 rmsk exon 19700625 19701232 4939 - . gene_id "HERVL66_19p13.11a"; transcript_id "HERVL66_19p13.11a"; locus "HERVL66_19p13.11a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0024"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1189"; repStart "-2532"; ### ERVLB4_19p13.11 ### chr19 rmsk gene 19760002 19764818 . + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1657"; model_cov "2540"; model_pct "44.5"; chr19 rmsk exon 19760002 19760027 1863 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "115"; repFamily "ERVL"; repLeft "-5599"; repStart "92"; chr19 rmsk exon 19760320 19760792 1863 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "-5124"; repStart "116"; chr19 rmsk exon 19761109 19761520 4637 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "-4098"; repStart "1182"; chr19 rmsk exon 19761837 19761960 4637 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "1734"; repFamily "ERVL"; repLeft "-3980"; repStart "1617"; chr19 rmsk exon 19762256 19762865 4637 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "2333"; repFamily "ERVL"; repLeft "-3381"; repStart "1735"; chr19 rmsk exon 19763222 19763463 3870 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "2626"; repFamily "ERVL"; repLeft "-3088"; repStart "2392"; chr19 rmsk exon 19764169 19764818 3870 + . gene_id "ERVLB4_19p13.11"; transcript_id "ERVLB4_19p13.11"; locus "ERVLB4_19p13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1657"; repClass "LTR"; repEnd "3287"; repFamily "ERVL"; repLeft "-2427"; repStart "2627"; ### HERVL40_19p13.11 ### chr19 rmsk gene 19777091 19777702 . + . gene_id "HERVL40_19p13.11"; transcript_id "HERVL40_19p13.11"; locus "HERVL40_19p13.11"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0426"; model_cov "578"; model_pct "10.5"; chr19 rmsk exon 19777091 19777208 356 + . gene_id "HERVL40_19p13.11"; transcript_id "HERVL40_19p13.11"; locus "HERVL40_19p13.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0426"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1645"; repStart "3762"; chr19 rmsk exon 19777217 19777428 543 + . gene_id "HERVL40_19p13.11"; transcript_id "HERVL40_19p13.11"; locus "HERVL40_19p13.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0426"; repClass "LTR"; repEnd "4226"; repFamily "ERVL"; repLeft "-1304"; repStart "4006"; chr19 rmsk exon 19777469 19777702 859 + . gene_id "HERVL40_19p13.11"; transcript_id "HERVL40_19p13.11"; locus "HERVL40_19p13.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0426"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-874"; repStart "4421"; ### HARLEQUIN_19p13.11 ### chr19 rmsk gene 19781554 19786258 . - . gene_id "HARLEQUIN_19p13.11"; transcript_id "HARLEQUIN_19p13.11"; locus "HARLEQUIN_19p13.11"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0160"; model_cov "5223"; model_pct "75.7"; chr19 rmsk exon 19781554 19785796 26952 - . gene_id "HARLEQUIN_19p13.11"; transcript_id "HARLEQUIN_19p13.11"; locus "HARLEQUIN_19p13.11"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0160"; repClass "LTR"; repEnd "6002"; repFamily "ERV1"; repLeft "779"; repStart "-894"; chr19 rmsk exon 19785797 19786258 4074 - . gene_id "HARLEQUIN_19p13.11"; transcript_id "HARLEQUIN_19p13.11"; locus "HARLEQUIN_19p13.11"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0160"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19p13.11b ### chr19 rmsk gene 19823430 19825878 . + . gene_id "HERVL66_19p13.11b"; transcript_id "HERVL66_19p13.11b"; locus "HERVL66_19p13.11b"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0025"; model_cov "1852"; model_pct "42.8"; chr19 rmsk exon 19823430 19824050 4390 + . gene_id "HERVL66_19p13.11b"; transcript_id "HERVL66_19p13.11b"; locus "HERVL66_19p13.11b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0025"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr19 rmsk exon 19824051 19825802 14013 + . gene_id "HERVL66_19p13.11b"; transcript_id "HERVL66_19p13.11b"; locus "HERVL66_19p13.11b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0025"; repClass "LTR"; repEnd "1776"; repFamily "ERVL"; repLeft "-2553"; repStart "1"; chr19 rmsk exon 19825804 19825878 502 + . gene_id "HERVL66_19p13.11b"; transcript_id "HERVL66_19p13.11b"; locus "HERVL66_19p13.11b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0025"; repClass "LTR"; repEnd "2738"; repFamily "ERVL"; repLeft "-1591"; repStart "2661"; ### HERVL66_19p13.11c ### chr19 rmsk gene 19862527 19864026 . - . gene_id "HERVL66_19p13.11c"; transcript_id "HERVL66_19p13.11c"; locus "HERVL66_19p13.11c"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0026"; model_cov "869"; model_pct "20.1"; chr19 rmsk exon 19862527 19863080 4179 - . gene_id "HERVL66_19p13.11c"; transcript_id "HERVL66_19p13.11c"; locus "HERVL66_19p13.11c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0026"; repClass "LTR"; repEnd "1140"; repFamily "ERVL"; repLeft "586"; repStart "-3189"; chr19 rmsk exon 19863079 19863393 2333 - . gene_id "HERVL66_19p13.11c"; transcript_id "HERVL66_19p13.11c"; locus "HERVL66_19p13.11c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0026"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "1"; repStart "-4013"; chr19 rmsk exon 19863401 19863596 3502 - . gene_id "HERVL66_19p13.11c"; transcript_id "HERVL66_19p13.11c"; locus "HERVL66_19p13.11c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0026"; repClass "LTR"; repEnd "602"; repFamily "ERVL"; repLeft "440"; repStart "-8"; chr19 rmsk exon 19863625 19864026 3502 - . gene_id "HERVL66_19p13.11c"; transcript_id "HERVL66_19p13.11c"; locus "HERVL66_19p13.11c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0026"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "2"; repStart "-171"; ### HERVEA_19p13.11 ### chr19 rmsk gene 19895560 19897814 . + . gene_id "HERVEA_19p13.11"; transcript_id "HERVEA_19p13.11"; locus "HERVEA_19p13.11"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0087"; model_cov "1807"; model_pct "23.0"; chr19 rmsk exon 19895560 19897352 13385 + . gene_id "HERVEA_19p13.11"; transcript_id "HERVEA_19p13.11"; locus "HERVEA_19p13.11"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0087"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "6040"; chr19 rmsk exon 19897353 19897814 3635 + . gene_id "HERVEA_19p13.11"; transcript_id "HERVEA_19p13.11"; locus "HERVEA_19p13.11"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0087"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_19p13.11 ### chr19 rmsk gene 19897815 19900640 . + . gene_id "HERVIP10F_19p13.11"; transcript_id "HERVIP10F_19p13.11"; locus "HERVIP10F_19p13.11"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0109"; model_cov "2095"; model_pct "27.1"; chr19 rmsk exon 19897815 19899157 6342 + . gene_id "HERVIP10F_19p13.11"; transcript_id "HERVIP10F_19p13.11"; locus "HERVIP10F_19p13.11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0109"; repClass "LTR"; repEnd "7052"; repFamily "ERV1"; repLeft "-685"; repStart "5608"; chr19 rmsk exon 19899202 19899805 6342 + . gene_id "HERVIP10F_19p13.11"; transcript_id "HERVIP10F_19p13.11"; locus "HERVIP10F_19p13.11"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0109"; repClass "LTR"; repEnd "7704"; repFamily "ERV1"; repLeft "-33"; repStart "7053"; chr19 rmsk exon 19900136 19900640 2520 + . gene_id "HERVIP10F_19p13.11"; transcript_id "HERVIP10F_19p13.11"; locus "HERVIP10F_19p13.11"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0109"; repClass "LTR"; repEnd "514"; repFamily "ERV1"; repLeft "-9"; repStart "1"; ### HERVFH21_19p12 ### chr19 rmsk gene 19943851 19951066 . + . gene_id "HERVFH21_19p12"; transcript_id "HERVFH21_19p12"; locus "HERVFH21_19p12"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0037"; model_cov "5450"; model_pct "83.5"; chr19 rmsk exon 19943851 19944289 1029 + . gene_id "HERVFH21_19p12"; transcript_id "HERVFH21_19p12"; locus "HERVFH21_19p12"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0037"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "80"; chr19 rmsk exon 19944290 19949667 16506 + . gene_id "HERVFH21_19p12"; transcript_id "HERVFH21_19p12"; locus "HERVFH21_19p12"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0037"; repClass "LTR"; repEnd "5348"; repFamily "ERV1"; repLeft "-1181"; repStart "1"; chr19 rmsk exon 19950963 19951066 472 + . gene_id "HERVFH21_19p12"; transcript_id "HERVFH21_19p12"; locus "HERVFH21_19p12"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0037"; repClass "LTR"; repEnd "5754"; repFamily "ERV1"; repLeft "-775"; repStart "5651"; ### HERVL66_19p12a ### chr19 rmsk gene 19959694 19964935 . + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0027"; model_cov "3469"; model_pct "80.1"; chr19 rmsk exon 19959694 19959789 4031 + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0027"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "518"; chr19 rmsk exon 19959790 19961467 12830 + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0027"; repClass "LTR"; repEnd "1680"; repFamily "ERVL"; repLeft "-2649"; repStart "1"; chr19 rmsk exon 19962598 19962713 793 + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0027"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "-2539"; repStart "1675"; chr19 rmsk exon 19962700 19964290 11117 + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0027"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chr19 rmsk exon 19964291 19964935 3797 + . gene_id "HERVL66_19p12a"; transcript_id "HERVL66_19p12a"; locus "HERVL66_19p12a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0027"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL66_19p12b ### chr19 rmsk gene 19990990 19995758 . - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0028"; model_cov "3471"; model_pct "80.2"; chr19 rmsk exon 19990990 19991399 3176 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "1"; repStart "-201"; chr19 rmsk exon 19991400 19992984 11405 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2653"; repStart "0"; chr19 rmsk exon 19992964 19993085 13880 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1678"; repStart "-2532"; chr19 rmsk exon 19993392 19995078 13880 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "1677"; repFamily "ERVL"; repLeft "1"; repStart "-2652"; chr19 rmsk exon 19995079 19995673 4057 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr19 rmsk exon 19995674 19995758 573 - . gene_id "HERVL66_19p12b"; transcript_id "HERVL66_19p12b"; locus "HERVL66_19p12b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0028"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "310"; repStart "-216"; ### HERVL66_19p12c ### chr19 rmsk gene 20066218 20069544 . + . gene_id "HERVL66_19p12c"; transcript_id "HERVL66_19p12c"; locus "HERVL66_19p12c"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0029"; model_cov "1808"; model_pct "41.8"; chr19 rmsk exon 20066218 20066682 4144 + . gene_id "HERVL66_19p12c"; transcript_id "HERVL66_19p12c"; locus "HERVL66_19p12c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0029"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "146"; chr19 rmsk exon 20066683 20068008 10316 + . gene_id "HERVL66_19p12c"; transcript_id "HERVL66_19p12c"; locus "HERVL66_19p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0029"; repClass "LTR"; repEnd "1331"; repFamily "ERVL"; repLeft "-2998"; repStart "1"; chr19 rmsk exon 20068594 20068807 3621 + . gene_id "HERVL66_19p12c"; transcript_id "HERVL66_19p12c"; locus "HERVL66_19p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0029"; repClass "LTR"; repEnd "1528"; repFamily "ERVL"; repLeft "-2801"; repStart "1318"; chr19 rmsk exon 20069208 20069544 3621 + . gene_id "HERVL66_19p12c"; transcript_id "HERVL66_19p12c"; locus "HERVL66_19p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0029"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1529"; ### HERVL66_19p12d ### chr19 rmsk gene 20072866 20076629 . - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0030"; model_cov "2176"; model_pct "50.3"; chr19 rmsk exon 20072866 20073398 3414 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "3"; repStart "-118"; chr19 rmsk exon 20073400 20074994 11112 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr19 rmsk exon 20074975 20075095 831 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1675"; repStart "-2532"; chr19 rmsk exon 20075435 20075696 1971 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "1683"; repFamily "ERVL"; repLeft "1422"; repStart "-2646"; chr19 rmsk exon 20075953 20076071 880 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "1127"; repFamily "ERVL"; repLeft "1009"; repStart "-3202"; chr19 rmsk exon 20076072 20076393 2338 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "325"; repFamily "ERVL"; repLeft "1"; repStart "-285"; chr19 rmsk exon 20076394 20076629 2918 - . gene_id "HERVL66_19p12d"; transcript_id "HERVL66_19p12d"; locus "HERVL66_19p12d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0030"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "177"; repStart "-216"; ### HERVH_19p12a ### chr19 rmsk gene 20087687 20096781 . - . gene_id "HERVH_19p12a"; transcript_id "HERVH_19p12a"; locus "HERVH_19p12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1150"; model_cov "7712"; model_pct "100.0"; chr19 rmsk exon 20087687 20088135 3462 - . gene_id "HERVH_19p12a"; transcript_id "HERVH_19p12a"; locus "HERVH_19p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1150"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19 rmsk exon 20088136 20096333 29489 - . gene_id "HERVH_19p12a"; transcript_id "HERVH_19p12a"; locus "HERVH_19p12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1150"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 20096336 20096781 3568 - . gene_id "HERVH_19p12a"; transcript_id "HERVH_19p12a"; locus "HERVH_19p12a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1150"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_19p12a ### chr19 rmsk gene 20099536 20101469 . + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0287"; model_cov "1191"; model_pct "13.8"; chr19 rmsk exon 20099536 20099787 1883 + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0287"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "3502"; chr19 rmsk exon 20099767 20100381 5274 + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0287"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "5405"; chr19 rmsk exon 20100375 20100412 296 + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0287"; repClass "LTR"; repEnd "7547"; repFamily "ERV1"; repLeft "-1079"; repStart "7510"; chr19 rmsk exon 20100404 20100692 2237 + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0287"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "-3"; repStart "8335"; chr19 rmsk exon 20100698 20101469 5031 + . gene_id "HERVW_19p12a"; transcript_id "HERVW_19p12a"; locus "HERVW_19p12a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0287"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HERVH_19p12b ### chr19 rmsk gene 20154966 20161284 . + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1151"; model_cov "4902"; model_pct "63.6"; chr19 rmsk exon 20154966 20156337 20905 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "1342"; repFamily "ERV1"; repLeft "-6371"; repStart "1"; chr19 rmsk exon 20157301 20158955 20905 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1343"; chr19 rmsk exon 20158935 20159082 839 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 20159087 20159574 3286 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3505"; chr19 rmsk exon 20159577 20160238 4439 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr19 rmsk exon 20160240 20160456 1385 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 20160455 20160833 2614 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr19 rmsk exon 20160834 20161284 3461 + . gene_id "HERVH_19p12b"; transcript_id "HERVH_19p12b"; locus "HERVH_19p12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1151"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL66_19p12e ### chr19 rmsk gene 20161342 20163593 . + . gene_id "HERVL66_19p12e"; transcript_id "HERVL66_19p12e"; locus "HERVL66_19p12e"; category "internal"; intModel "HERVL66-int"; locid "HERVL66-int_0033"; model_cov "1778"; model_pct "41.1"; chr19 rmsk exon 20161342 20161441 13009 + . gene_id "HERVL66_19p12e"; transcript_id "HERVL66_19p12e"; locus "HERVL66_19p12e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0033"; repClass "LTR"; repEnd "201"; repFamily "ERVL"; repLeft "-4128"; repStart "106"; chr19 rmsk exon 20161910 20163526 13009 + . gene_id "HERVL66_19p12e"; transcript_id "HERVL66_19p12e"; locus "HERVL66_19p12e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0033"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "-2539"; repStart "202"; chr19 rmsk exon 20163495 20163593 544 + . gene_id "HERVL66_19p12e"; transcript_id "HERVL66_19p12e"; locus "HERVL66_19p12e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0033"; repClass "LTR"; repEnd "2733"; repFamily "ERVL"; repLeft "-1596"; repStart "2638"; ### HERVIP10F_19p12 ### chr19 rmsk gene 20205211 20206834 . + . gene_id "HERVIP10F_19p12"; transcript_id "HERVIP10F_19p12"; locus "HERVIP10F_19p12"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0110"; model_cov "1669"; model_pct "21.6"; chr19 rmsk exon 20205211 20206834 7945 + . gene_id "HERVIP10F_19p12"; transcript_id "HERVIP10F_19p12"; locus "HERVIP10F_19p12"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0110"; repClass "LTR"; repEnd "4519"; repFamily "ERV1"; repLeft "-3218"; repStart "2850"; ### HERVL66_19p12f ### chr19 rmsk gene 20239410 20240961 . - . gene_id "HERVL66_19p12f"; transcript_id "HERVL66_19p12f"; locus "HERVL66_19p12f"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0035"; model_cov "870"; model_pct "20.1"; chr19 rmsk exon 20239410 20239961 4498 - . gene_id "HERVL66_19p12f"; transcript_id "HERVL66_19p12f"; locus "HERVL66_19p12f"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0035"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "586"; repStart "-3187"; chr19 rmsk exon 20239960 20240270 2358 - . gene_id "HERVL66_19p12f"; transcript_id "HERVL66_19p12f"; locus "HERVL66_19p12f"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0035"; repClass "LTR"; repEnd "316"; repFamily "ERVL"; repLeft "2"; repStart "-4013"; chr19 rmsk exon 20240272 20240961 4097 - . gene_id "HERVL66_19p12f"; transcript_id "HERVL66_19p12f"; locus "HERVL66_19p12f"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0035"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVEA_19p12a ### chr19 rmsk gene 20243740 20248488 . + . gene_id "HERVEA_19p12a"; transcript_id "HERVEA_19p12a"; locus "HERVEA_19p12a"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0088"; model_cov "4379"; model_pct "55.8"; chr19 rmsk exon 20243740 20244184 2348 + . gene_id "HERVEA_19p12a"; transcript_id "HERVEA_19p12a"; locus "HERVEA_19p12a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0088"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 20244185 20246161 9874 + . gene_id "HERVEA_19p12a"; transcript_id "HERVEA_19p12a"; locus "HERVEA_19p12a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0088"; repClass "LTR"; repEnd "2037"; repFamily "ERV1"; repLeft "-5810"; repStart "1"; chr19 rmsk exon 20246145 20248488 14694 + . gene_id "HERVEA_19p12a"; transcript_id "HERVEA_19p12a"; locus "HERVEA_19p12a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0088"; repClass "LTR"; repEnd "5698"; repFamily "ERV1"; repLeft "-2149"; repStart "3355"; ### HML2_19p12a ### chr19 rmsk gene 20276591 20286703 . + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0110"; model_cov "7444"; model_pct "98.8"; chr19 rmsk exon 20276591 20277574 6327 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 20277575 20278301 5156 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr19 rmsk exon 20278394 20282633 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "4994"; repFamily "ERVK"; repLeft "-2542"; repStart "743"; chr19 rmsk exon 20282931 20284402 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "6447"; repFamily "ERVK"; repLeft "-1089"; repStart "4995"; chr19 rmsk exon 20284741 20285656 3635 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "6445"; chr19 rmsk exon 20285752 20286703 5747 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "1"; ### HML1_19p12a ### chr19 rmsk gene 20317908 20322352 . - . gene_id "HML1_19p12a"; transcript_id "HML1_19p12a"; locus "HML1_19p12a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0108"; model_cov "3869"; model_pct "63.5"; chr19 rmsk exon 20317908 20319892 13596 - . gene_id "HML1_19p12a"; transcript_id "HML1_19p12a"; locus "HML1_19p12a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0108"; repClass "LTR"; repEnd "2522"; repFamily "ERVK"; repLeft "320"; repStart "-3574"; chr19 rmsk exon 20320047 20321730 11174 - . gene_id "HML1_19p12a"; transcript_id "HML1_19p12a"; locus "HML1_19p12a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0108"; repClass "LTR"; repEnd "1668"; repFamily "ERVK"; repLeft "1"; repStart "-4428"; chr19 rmsk exon 20321731 20322352 2735 - . gene_id "HML1_19p12a"; transcript_id "HML1_19p12a"; locus "HML1_19p12a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0108"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "17"; repStart "0"; ### HERVIP10FH_19p12a ### chr19 rmsk gene 20359919 20361619 . + . gene_id "HERVIP10FH_19p12a"; transcript_id "HERVIP10FH_19p12a"; locus "HERVIP10FH_19p12a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0169"; model_cov "1248"; model_pct "24.5"; chr19 rmsk exon 20359919 20360422 3817 + . gene_id "HERVIP10FH_19p12a"; transcript_id "HERVIP10FH_19p12a"; locus "HERVIP10FH_19p12a"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0169"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 20360423 20361619 4599 + . gene_id "HERVIP10FH_19p12a"; transcript_id "HERVIP10FH_19p12a"; locus "HERVIP10FH_19p12a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0169"; repClass "LTR"; repEnd "1249"; repFamily "ERV1"; repLeft "-3853"; repStart "1"; ### HERVS71_19p12a ### chr19 rmsk gene 20362028 20371994 . + . gene_id "HERVS71_19p12a"; transcript_id "HERVS71_19p12a"; locus "HERVS71_19p12a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0045"; model_cov "8762"; model_pct "97.6"; chr19 rmsk exon 20362028 20362578 2718 + . gene_id "HERVS71_19p12a"; transcript_id "HERVS71_19p12a"; locus "HERVS71_19p12a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0045"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "34"; chr19 rmsk exon 20362581 20362814 1288 + . gene_id "HERVS71_19p12a"; transcript_id "HERVS71_19p12a"; locus "HERVS71_19p12a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0045"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "-8737"; repStart "4"; chr19 rmsk exon 20362808 20371352 62147 + . gene_id "HERVS71_19p12a"; transcript_id "HERVS71_19p12a"; locus "HERVS71_19p12a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0045"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "384"; chr19 rmsk exon 20371353 20371994 2795 + . gene_id "HERVS71_19p12a"; transcript_id "HERVS71_19p12a"; locus "HERVS71_19p12a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0045"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10FH_19p12b ### chr19 rmsk gene 20372007 20376073 . + . gene_id "HERVIP10FH_19p12b"; transcript_id "HERVIP10FH_19p12b"; locus "HERVIP10FH_19p12b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0170"; model_cov "3219"; model_pct "63.1"; chr19 rmsk exon 20372007 20373705 12344 + . gene_id "HERVIP10FH_19p12b"; transcript_id "HERVIP10FH_19p12b"; locus "HERVIP10FH_19p12b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0170"; repClass "LTR"; repEnd "3083"; repFamily "ERV1"; repLeft "-2019"; repStart "1382"; chr19 rmsk exon 20373786 20374657 9314 + . gene_id "HERVIP10FH_19p12b"; transcript_id "HERVIP10FH_19p12b"; locus "HERVIP10FH_19p12b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0170"; repClass "LTR"; repEnd "4461"; repFamily "ERV1"; repLeft "-641"; repStart "3583"; chr19 rmsk exon 20374955 20375604 9314 + . gene_id "HERVIP10FH_19p12b"; transcript_id "HERVIP10FH_19p12b"; locus "HERVIP10FH_19p12b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0170"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "4462"; chr19 rmsk exon 20375605 20376073 3395 + . gene_id "HERVIP10FH_19p12b"; transcript_id "HERVIP10FH_19p12b"; locus "HERVIP10FH_19p12b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0170"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### HARLEQUIN_19p12a ### chr19 rmsk gene 20426124 20432598 . - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0161"; model_cov "5552"; model_pct "80.5"; chr19 rmsk exon 20426124 20426578 3493 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 20426579 20429510 21573 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3947"; repStart "0"; chr19 rmsk exon 20429537 20430122 21573 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "3946"; repFamily "ERV1"; repLeft "3353"; repStart "-2950"; chr19 rmsk exon 20430124 20431115 6343 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "2572"; repFamily "ERV1"; repLeft "1572"; repStart "-4324"; chr19 rmsk exon 20431102 20431747 4452 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "262"; repStart "-6003"; chr19 rmsk exon 20431743 20432120 2427 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "1"; repStart "-6516"; chr19 rmsk exon 20432121 20432598 3774 - . gene_id "HARLEQUIN_19p12a"; transcript_id "HARLEQUIN_19p12a"; locus "HARLEQUIN_19p12a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0161"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19p12g ### chr19 rmsk gene 20432599 20437807 . + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0036"; model_cov "3447"; model_pct "79.6"; chr19 rmsk exon 20432599 20432904 1879 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "281"; chr19 rmsk exon 20432905 20433423 11876 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-3812"; repStart "1"; chr19 rmsk exon 20433731 20434656 11876 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "1425"; repFamily "ERVL"; repLeft "-2904"; repStart "518"; chr19 rmsk exon 20434965 20435221 11876 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "1677"; repFamily "ERVL"; repLeft "-2652"; repStart "1426"; chr19 rmsk exon 20435528 20435628 11876 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "1776"; repFamily "ERVL"; repLeft "-2553"; repStart "1678"; chr19 rmsk exon 20435629 20437216 10748 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chr19 rmsk exon 20437217 20437807 4065 + . gene_id "HERVL66_19p12g"; transcript_id "HERVL66_19p12g"; locus "HERVL66_19p12g"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0036"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL66_19p12h ### chr19 rmsk gene 20440060 20442537 . - . gene_id "HERVL66_19p12h"; transcript_id "HERVL66_19p12h"; locus "HERVL66_19p12h"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0037"; model_cov "2733"; model_pct "63.1"; chr19 rmsk exon 20440060 20441918 12575 - . gene_id "HERVL66_19p12h"; transcript_id "HERVL66_19p12h"; locus "HERVL66_19p12h"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0037"; repClass "LTR"; repEnd "2734"; repFamily "ERVL"; repLeft "1"; repStart "-1595"; chr19 rmsk exon 20441919 20442537 4095 - . gene_id "HERVL66_19p12h"; transcript_id "HERVL66_19p12h"; locus "HERVL66_19p12h"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0037"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL66_19p12i ### chr19 rmsk gene 20469213 20471889 . - . gene_id "HERVL66_19p12i"; transcript_id "HERVL66_19p12i"; locus "HERVL66_19p12i"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0038"; model_cov "1440"; model_pct "33.3"; chr19 rmsk exon 20469213 20470077 6196 - . gene_id "HERVL66_19p12i"; transcript_id "HERVL66_19p12i"; locus "HERVL66_19p12i"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0038"; repClass "LTR"; repEnd "1438"; repFamily "ERVL"; repLeft "581"; repStart "-2891"; chr19 rmsk exon 20470712 20471287 4210 - . gene_id "HERVL66_19p12i"; transcript_id "HERVL66_19p12i"; locus "HERVL66_19p12i"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0038"; repClass "LTR"; repEnd "585"; repFamily "ERVL"; repLeft "2"; repStart "-3744"; chr19 rmsk exon 20471289 20471889 4034 - . gene_id "HERVL66_19p12i"; transcript_id "HERVL66_19p12i"; locus "HERVL66_19p12i"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0038"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH48_19p12a ### chr19 rmsk gene 20473970 20480714 . - . gene_id "HERVH48_19p12a"; transcript_id "HERVH48_19p12a"; locus "HERVH48_19p12a"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0050"; model_cov "6101"; model_pct "91.7"; chr19 rmsk exon 20473970 20474375 2773 - . gene_id "HERVH48_19p12a"; transcript_id "HERVH48_19p12a"; locus "HERVH48_19p12a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0050"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "2"; repStart "0"; chr19 rmsk exon 20474377 20476289 7610 - . gene_id "HERVH48_19p12a"; transcript_id "HERVH48_19p12a"; locus "HERVH48_19p12a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0050"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "4680"; repStart "0"; chr19 rmsk exon 20476273 20480313 23105 - . gene_id "HERVH48_19p12a"; transcript_id "HERVH48_19p12a"; locus "HERVH48_19p12a"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0050"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "1"; repStart "-2526"; chr19 rmsk exon 20480315 20480714 2720 - . gene_id "HERVH48_19p12a"; transcript_id "HERVH48_19p12a"; locus "HERVH48_19p12a"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0050"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### HERVK11_19p12a ### chr19 rmsk gene 20500224 20509728 . - . gene_id "HERVK11_19p12a"; transcript_id "HERVK11_19p12a"; locus "HERVK11_19p12a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0094"; model_cov "7538"; model_pct "94.8"; chr19 rmsk exon 20500224 20501229 4559 - . gene_id "HERVK11_19p12a"; transcript_id "HERVK11_19p12a"; locus "HERVK11_19p12a"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0094"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 20501264 20508711 56482 - . gene_id "HERVK11_19p12a"; transcript_id "HERVK11_19p12a"; locus "HERVK11_19p12a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0094"; repClass "LTR"; repEnd "7543"; repFamily "ERVK"; repLeft "5"; repStart "-410"; chr19 rmsk exon 20508718 20509728 4665 - . gene_id "HERVK11_19p12a"; transcript_id "HERVK11_19p12a"; locus "HERVK11_19p12a"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0094"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HERVEA_19p12b ### chr19 rmsk gene 20509937 20518544 . - . gene_id "HERVEA_19p12b"; transcript_id "HERVEA_19p12b"; locus "HERVEA_19p12b"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0089"; model_cov "7846"; model_pct "100.0"; chr19 rmsk exon 20509937 20510334 2979 - . gene_id "HERVEA_19p12b"; transcript_id "HERVEA_19p12b"; locus "HERVEA_19p12b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0089"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr19 rmsk exon 20510336 20518101 63073 - . gene_id "HERVEA_19p12b"; transcript_id "HERVEA_19p12b"; locus "HERVEA_19p12b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0089"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 20518102 20518544 3805 - . gene_id "HERVEA_19p12b"; transcript_id "HERVEA_19p12b"; locus "HERVEA_19p12b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0089"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_19p12c ### chr19 rmsk gene 20518831 20524470 . - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1153"; model_cov "5090"; model_pct "66.0"; chr19 rmsk exon 20518831 20519218 2741 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr19 rmsk exon 20519221 20519653 2834 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr19 rmsk exon 20519657 20520453 5514 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "5016"; repFamily "ERV1"; repLeft "4221"; repStart "-2697"; chr19 rmsk exon 20520436 20521000 1929 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "5660"; repFamily "ERV1"; repLeft "4865"; repStart "-2053"; chr19 rmsk exon 20520995 20521441 2776 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "3140"; repStart "-4126"; chr19 rmsk exon 20521421 20523608 13346 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "800"; repStart "-4718"; chr19 rmsk exon 20523668 20524057 1142 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "30"; repStart "-7255"; chr19 rmsk exon 20524088 20524470 2624 - . gene_id "HERVH_19p12c"; transcript_id "HERVH_19p12c"; locus "HERVH_19p12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1153"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19p12j ### chr19 rmsk gene 20566675 20571306 . + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0039"; model_cov "3464"; model_pct "80.0"; chr19 rmsk exon 20566675 20567078 3823 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-207"; repStart "1"; chr19 rmsk exon 20567115 20567318 3823 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-1"; repStart "404"; chr19 rmsk exon 20567319 20568963 12343 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "1689"; repFamily "ERVL"; repLeft "-2640"; repStart "1"; chr19 rmsk exon 20569418 20569519 844 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "1776"; repFamily "ERVL"; repLeft "-2553"; repStart "1675"; chr19 rmsk exon 20569520 20571106 11284 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chr19 rmsk exon 20571107 20571306 1564 + . gene_id "HERVL66_19p12j"; transcript_id "HERVL66_19p12j"; locus "HERVL66_19p12j"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0039"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "-410"; repStart "1"; ### HERV3_19p12a ### chr19 rmsk gene 20611051 20618134 . + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0067"; model_cov "5751"; model_pct "68.3"; chr19 rmsk exon 20611051 20611625 3698 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 20611626 20612547 6917 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-7852"; repStart "-374"; chr19 rmsk exon 20612596 20613834 6917 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "2078"; repFamily "ERV1"; repLeft "-6348"; repStart "796"; chr19 rmsk exon 20614096 20614503 1877 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "-5950"; repStart "2069"; chr19 rmsk exon 20614495 20617555 9170 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "5312"; chr19 rmsk exon 20617558 20618134 3337 + . gene_id "HERV3_19p12a"; transcript_id "HERV3_19p12a"; locus "HERV3_19p12a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0067"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML1_19p12b ### chr19 rmsk gene 20711178 20713338 . - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0110"; model_cov "1610"; model_pct "26.4"; chr19 rmsk exon 20711178 20711439 1878 - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0110"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5612"; repStart "-199"; chr19 rmsk exon 20711439 20711765 1769 - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0110"; repClass "LTR"; repEnd "5465"; repFamily "ERVK"; repLeft "5101"; repStart "-631"; chr19 rmsk exon 20711747 20712494 5587 - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0110"; repClass "LTR"; repEnd "2448"; repFamily "ERVK"; repLeft "1704"; repStart "-3648"; chr19 rmsk exon 20712539 20712757 1448 - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0110"; repClass "LTR"; repEnd "218"; repFamily "ERVK"; repLeft "1"; repStart "-5878"; chr19 rmsk exon 20712758 20713338 4202 - . gene_id "HML1_19p12b"; transcript_id "HML1_19p12b"; locus "HML1_19p12b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0110"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVE_19p12 ### chr19 rmsk gene 20746820 20755632 . - . gene_id "HERVE_19p12"; transcript_id "HERVE_19p12"; locus "HERVE_19p12"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0154"; model_cov "7812"; model_pct "100.0"; chr19 rmsk exon 20746820 20747318 4097 - . gene_id "HERVE_19p12"; transcript_id "HERVE_19p12"; locus "HERVE_19p12"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0154"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 20747319 20755137 72954 - . gene_id "HERVE_19p12"; transcript_id "HERVE_19p12"; locus "HERVE_19p12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0154"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 20755138 20755632 3937 - . gene_id "HERVE_19p12"; transcript_id "HERVE_19p12"; locus "HERVE_19p12"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0154"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19p12k ### chr19 rmsk gene 20770618 20775431 . - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0040"; model_cov "3443"; model_pct "79.5"; chr19 rmsk exon 20770618 20770811 1503 - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0040"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "7"; repStart "-410"; chr19 rmsk exon 20770818 20772406 11588 - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0040"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr19 rmsk exon 20772413 20772508 13512 - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0040"; repClass "LTR"; repEnd "1770"; repFamily "ERVL"; repLeft "1679"; repStart "-2559"; chr19 rmsk exon 20773123 20774816 13512 - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0040"; repClass "LTR"; repEnd "1678"; repFamily "ERVL"; repLeft "1"; repStart "-2651"; chr19 rmsk exon 20774817 20775431 3776 - . gene_id "HERVL66_19p12k"; transcript_id "HERVL66_19p12k"; locus "HERVL66_19p12k"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0040"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVIP10FH_19p12c ### chr19 rmsk gene 20857639 20862513 . + . gene_id "HERVIP10FH_19p12c"; transcript_id "HERVIP10FH_19p12c"; locus "HERVIP10FH_19p12c"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0171"; model_cov "3364"; model_pct "65.9"; chr19 rmsk exon 20857639 20858139 3874 + . gene_id "HERVIP10FH_19p12c"; transcript_id "HERVIP10FH_19p12c"; locus "HERVIP10FH_19p12c"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0171"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "81"; chr19 rmsk exon 20858142 20858955 3068 + . gene_id "HERVIP10FH_19p12c"; transcript_id "HERVIP10FH_19p12c"; locus "HERVIP10FH_19p12c"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0171"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-4255"; repStart "2"; chr19 rmsk exon 20859475 20859647 1379 + . gene_id "HERVIP10FH_19p12c"; transcript_id "HERVIP10FH_19p12c"; locus "HERVIP10FH_19p12c"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0171"; repClass "LTR"; repEnd "2504"; repFamily "ERV1"; repLeft "-2598"; repStart "2444"; chr19 rmsk exon 20860011 20862513 8917 + . gene_id "HERVIP10FH_19p12c"; transcript_id "HERVIP10FH_19p12c"; locus "HERVIP10FH_19p12c"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0171"; repClass "LTR"; repEnd "4655"; repFamily "ERV1"; repLeft "-447"; repStart "2196"; ### HARLEQUIN_19p12b ### chr19 rmsk gene 21002382 21009375 . + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0162"; model_cov "5082"; model_pct "73.7"; chr19 rmsk exon 21002382 21002840 3625 + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0162"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 21002841 21005098 23942 + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0162"; repClass "LTR"; repEnd "2378"; repFamily "ERV1"; repLeft "-4518"; repStart "1"; chr19 rmsk exon 21005405 21007280 23942 + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0162"; repClass "LTR"; repEnd "4238"; repFamily "ERV1"; repLeft "-2658"; repStart "2379"; chr19 rmsk exon 21007353 21007741 2607 + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0162"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "-2277"; repStart "4230"; chr19 rmsk exon 21008919 21009375 3336 + . gene_id "HARLEQUIN_19p12b"; transcript_id "HARLEQUIN_19p12b"; locus "HARLEQUIN_19p12b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0162"; repClass "LTR"; repEnd "5070"; repFamily "ERV1"; repLeft "-1826"; repStart "4613"; ### PABLA_19p12a ### chr19 rmsk gene 21086913 21090642 . - . gene_id "PABLA_19p12a"; transcript_id "PABLA_19p12a"; locus "PABLA_19p12a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0139"; model_cov "4102"; model_pct "81.8"; chr19 rmsk exon 21086913 21089283 7727 - . gene_id "PABLA_19p12a"; transcript_id "PABLA_19p12a"; locus "PABLA_19p12a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0139"; repClass "LTR"; repEnd "3725"; repFamily "ERV1"; repLeft "1236"; repStart "-1290"; chr19 rmsk exon 21089279 21090037 2154 - . gene_id "PABLA_19p12a"; transcript_id "PABLA_19p12a"; locus "PABLA_19p12a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0139"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "-22"; repStart "-4618"; chr19 rmsk exon 21090005 21090642 2920 - . gene_id "PABLA_19p12a"; transcript_id "PABLA_19p12a"; locus "PABLA_19p12a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0139"; repClass "LTR"; repEnd "-1041"; repFamily "ERV1"; repLeft "-2235"; repStart "-6056"; ### HERVH_19p12d ### chr19 rmsk gene 21130343 21135256 . - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1155"; model_cov "4762"; model_pct "61.7"; chr19 rmsk exon 21130343 21130733 1325 - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1155"; repClass "LTR"; repEnd "5732"; repFamily "ERV1"; repLeft "4986"; repStart "-1981"; chr19 rmsk exon 21130720 21130759 302 - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1155"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3954"; repStart "-3720"; chr19 rmsk exon 21131113 21131433 1809 - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1155"; repClass "LTR"; repEnd "3948"; repFamily "ERV1"; repLeft "3630"; repStart "-3765"; chr19 rmsk exon 21131433 21134780 14576 - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1155"; repClass "LTR"; repEnd "3660"; repFamily "ERV1"; repLeft "1"; repStart "-4053"; chr19 rmsk exon 21134781 21135256 3451 - . gene_id "HERVH_19p12d"; transcript_id "HERVH_19p12d"; locus "HERVH_19p12d"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1155"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_19p12b ### chr19 rmsk gene 21146874 21152853 . - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0140"; model_cov "4359"; model_pct "86.9"; chr19 rmsk exon 21146874 21147000 750 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "5011"; repFamily "ERV1"; repLeft "4885"; repStart "-4"; chr19 rmsk exon 21146991 21147205 1716 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "3725"; repFamily "ERV1"; repLeft "3501"; repStart "-1290"; chr19 rmsk exon 21147511 21147990 5995 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "3438"; repFamily "ERV1"; repLeft "3247"; repStart "-1577"; chr19 rmsk exon 21148295 21149587 5995 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "2058"; repFamily "ERV1"; repLeft "283"; repStart "-2957"; chr19 rmsk exon 21150463 21151004 2802 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "1802"; repFamily "ERV1"; repLeft "1236"; repStart "-3213"; chr19 rmsk exon 21151001 21151048 766 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "1041"; repStart "-3929"; chr19 rmsk exon 21151342 21151464 766 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "1040"; repFamily "ERV1"; repLeft "935"; repStart "-3975"; chr19 rmsk exon 21151432 21152853 4321 - . gene_id "PABLA_19p12b"; transcript_id "PABLA_19p12b"; locus "PABLA_19p12b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0140"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "-930"; repStart "-4618"; ### HML6_19p12a ### chr19 rmsk gene 21233790 21238065 . + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0082"; model_cov "2355"; model_pct "32.7"; chr19 rmsk exon 21233790 21234232 3122 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 21234426 21234651 276 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr19 rmsk exon 21234707 21234813 481 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "639"; repFamily "ERVK"; repLeft "-6563"; repStart "535"; chr19 rmsk exon 21234808 21234908 9482 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "1380"; repFamily "ERVK"; repLeft "-5822"; repStart "1285"; chr19 rmsk exon 21234949 21236760 9482 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "3109"; repFamily "ERVK"; repLeft "-4093"; repStart "1381"; chr19 rmsk exon 21237346 21237388 1541 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "6579"; repFamily "ERVK"; repLeft "-623"; repStart "6537"; chr19 rmsk exon 21237386 21237489 616 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "6788"; repFamily "ERVK"; repLeft "-414"; repStart "6685"; chr19 rmsk exon 21237558 21237624 369 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "7127"; repFamily "ERVK"; repLeft "-75"; repStart "7061"; chr19 rmsk exon 21237631 21238065 3062 + . gene_id "HML6_19p12a"; transcript_id "HML6_19p12a"; locus "HML6_19p12a"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0082"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_19p12a ### chr19 rmsk gene 21338382 21345290 . - . gene_id "HML3_19p12a"; transcript_id "HML3_19p12a"; locus "HML3_19p12a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0216"; model_cov "5891"; model_pct "97.8"; chr19 rmsk exon 21338382 21338889 4047 - . gene_id "HML3_19p12a"; transcript_id "HML3_19p12a"; locus "HML3_19p12a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0216"; repClass "LTR"; repEnd "508"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chr19 rmsk exon 21338890 21344287 39487 - . gene_id "HML3_19p12a"; transcript_id "HML3_19p12a"; locus "HML3_19p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0216"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "513"; repStart "0"; chr19 rmsk exon 21344409 21344776 2468 - . gene_id "HML3_19p12a"; transcript_id "HML3_19p12a"; locus "HML3_19p12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0216"; repClass "LTR"; repEnd "391"; repFamily "ERVK"; repLeft "8"; repStart "-5630"; chr19 rmsk exon 21344784 21345290 4023 - . gene_id "HML3_19p12a"; transcript_id "HML3_19p12a"; locus "HML3_19p12a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0216"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_19p12a ### chr19 rmsk gene 21365058 21367044 . - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0509"; model_cov "828"; model_pct "13.9"; chr19 rmsk exon 21365058 21365421 3457 - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0509"; repClass "LTR"; repEnd "370"; repFamily "ERV1"; repLeft "1"; repStart "-184"; chr19 rmsk exon 21365422 21365674 1700 - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0509"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5700"; repStart "-2"; chr19 rmsk exon 21365972 21366038 1700 - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0509"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "5637"; repStart "-247"; chr19 rmsk exon 21366037 21366525 2326 - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0509"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "1"; repStart "-5423"; chr19 rmsk exon 21366526 21367044 3024 - . gene_id "MER41_19p12a"; transcript_id "MER41_19p12a"; locus "MER41_19p12a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0509"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_19p12b ### chr19 rmsk gene 21412023 21417699 . - . gene_id "HML3_19p12b"; transcript_id "HML3_19p12b"; locus "HML3_19p12b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0217"; model_cov "5231"; model_pct "86.9"; chr19 rmsk exon 21412023 21412526 3991 - . gene_id "HML3_19p12b"; transcript_id "HML3_19p12b"; locus "HML3_19p12b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0217"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 21412530 21417699 44583 - . gene_id "HML3_19p12b"; transcript_id "HML3_19p12b"; locus "HML3_19p12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0217"; repClass "LTR"; repEnd "6016"; repFamily "ERVK"; repLeft "785"; repStart "-5"; ### HML3_19p12c ### chr19 rmsk gene 21417759 21419018 . - . gene_id "HML3_19p12c"; transcript_id "HML3_19p12c"; locus "HML3_19p12c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0218"; model_cov "783"; model_pct "13.0"; chr19 rmsk exon 21417759 21418531 44583 - . gene_id "HML3_19p12c"; transcript_id "HML3_19p12c"; locus "HML3_19p12c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0218"; repClass "LTR"; repEnd "6016"; repFamily "ERVK"; repLeft "5233"; repStart "-5"; chr19 rmsk exon 21418532 21419018 3847 - . gene_id "HML3_19p12c"; transcript_id "HML3_19p12c"; locus "HML3_19p12c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0218"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV3_19p12b ### chr19 rmsk gene 21430674 21441176 . - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0068"; model_cov "8539"; model_pct "100.0"; chr19 rmsk exon 21430674 21431188 2116 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 21431191 21431877 19786 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7750"; repStart "0"; chr19 rmsk exon 21432171 21435553 19786 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "7749"; repFamily "ERV1"; repLeft "4233"; repStart "-677"; chr19 rmsk exon 21435798 21436222 19786 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "4232"; repFamily "ERV1"; repLeft "3807"; repStart "-4194"; chr19 rmsk exon 21436299 21437861 12436 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "3430"; repFamily "ERV1"; repLeft "1738"; repStart "-4996"; chr19 rmsk exon 21438170 21438613 12436 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "2112"; repFamily "ERV1"; repLeft "1673"; repStart "-6314"; chr19 rmsk exon 21438913 21440194 12436 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "1672"; repFamily "ERV1"; repLeft "363"; repStart "-6754"; chr19 rmsk exon 21440181 21440667 1491 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "174"; repFamily "ERV1"; repLeft "-308"; repStart "-8252"; chr19 rmsk exon 21440668 21441176 2375 - . gene_id "HERV3_19p12b"; transcript_id "HERV3_19p12b"; locus "HERV3_19p12b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0068"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "19"; repStart "-3"; ### MER4_19p12a ### chr19 rmsk gene 21454300 21456510 . - . gene_id "MER4_19p12a"; transcript_id "MER4_19p12a"; locus "MER4_19p12a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0754"; model_cov "1700"; model_pct "25.8"; chr19 rmsk exon 21454300 21454665 8883 - . gene_id "MER4_19p12a"; transcript_id "MER4_19p12a"; locus "MER4_19p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0754"; repClass "LTR"; repEnd "5869"; repFamily "ERV1"; repLeft "5512"; repStart "-729"; chr19 rmsk exon 21454976 21455218 8883 - . gene_id "MER4_19p12a"; transcript_id "MER4_19p12a"; locus "MER4_19p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0754"; repClass "LTR"; repEnd "5511"; repFamily "ERV1"; repLeft "5284"; repStart "-1087"; chr19 rmsk exon 21455452 21456510 8883 - . gene_id "MER4_19p12a"; transcript_id "MER4_19p12a"; locus "MER4_19p12a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0754"; repClass "LTR"; repEnd "5283"; repFamily "ERV1"; repLeft "4167"; repStart "-1315"; ### HML5_19p12a ### chr19 rmsk gene 21621638 21627353 . + . gene_id "HML5_19p12a"; transcript_id "HML5_19p12a"; locus "HML5_19p12a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0114"; model_cov "5099"; model_pct "74.6"; chr19 rmsk exon 21621638 21622101 2881 + . gene_id "HML5_19p12a"; transcript_id "HML5_19p12a"; locus "HML5_19p12a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0114"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 21622130 21625081 24149 + . gene_id "HML5_19p12a"; transcript_id "HML5_19p12a"; locus "HML5_19p12a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0114"; repClass "LTR"; repEnd "3203"; repFamily "ERVK"; repLeft "-3634"; repStart "40"; chr19 rmsk exon 21625143 21625476 24149 + . gene_id "HML5_19p12a"; transcript_id "HML5_19p12a"; locus "HML5_19p12a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0114"; repClass "LTR"; repEnd "3563"; repFamily "ERVK"; repLeft "-3274"; repStart "3204"; chr19 rmsk exon 21625783 21627353 24149 + . gene_id "HML5_19p12a"; transcript_id "HML5_19p12a"; locus "HML5_19p12a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0114"; repClass "LTR"; repEnd "5141"; repFamily "ERVK"; repLeft "-1696"; repStart "3564"; ### HML6_19p12b ### chr19 rmsk gene 21627354 21628684 . + . gene_id "HML6_19p12b"; transcript_id "HML6_19p12b"; locus "HML6_19p12b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0083"; model_cov "858"; model_pct "11.9"; chr19 rmsk exon 21627354 21627433 585 + . gene_id "HML6_19p12b"; transcript_id "HML6_19p12b"; locus "HML6_19p12b"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0083"; repClass "LTR"; repEnd "80"; repFamily "ERVK"; repLeft "-419"; repStart "1"; chr19 rmsk exon 21627434 21627861 2993 + . gene_id "HML6_19p12b"; transcript_id "HML6_19p12b"; locus "HML6_19p12b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0083"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 21627862 21628684 3021 + . gene_id "HML6_19p12b"; transcript_id "HML6_19p12b"; locus "HML6_19p12b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0083"; repClass "LTR"; repEnd "859"; repFamily "ERVK"; repLeft "-6343"; repStart "1"; ### HERVW_19p12b ### chr19 rmsk gene 21629385 21634782 . + . gene_id "HERVW_19p12b"; transcript_id "HERVW_19p12b"; locus "HERVW_19p12b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0288"; model_cov "4628"; model_pct "53.7"; chr19 rmsk exon 21629385 21629873 3722 + . gene_id "HERVW_19p12b"; transcript_id "HERVW_19p12b"; locus "HERVW_19p12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0288"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "-8"; repStart "299"; chr19 rmsk exon 21629888 21633932 29699 + . gene_id "HERVW_19p12b"; transcript_id "HERVW_19p12b"; locus "HERVW_19p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0288"; repClass "LTR"; repEnd "4045"; repFamily "ERV1"; repLeft "-4581"; repStart "1"; chr19 rmsk exon 21633924 21634456 3047 + . gene_id "HERVW_19p12b"; transcript_id "HERVW_19p12b"; locus "HERVW_19p12b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0288"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8042"; chr19 rmsk exon 21634457 21634782 2612 + . gene_id "HERVW_19p12b"; transcript_id "HERVW_19p12b"; locus "HERVW_19p12b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0288"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HML3_19p12d ### chr19 rmsk gene 21666568 21672069 . - . gene_id "HML3_19p12d"; transcript_id "HML3_19p12d"; locus "HML3_19p12d"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0219"; model_cov "5217"; model_pct "86.6"; chr19 rmsk exon 21666568 21667078 4269 - . gene_id "HML3_19p12d"; transcript_id "HML3_19p12d"; locus "HML3_19p12d"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0219"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 21667081 21672069 28853 - . gene_id "HML3_19p12d"; transcript_id "HML3_19p12d"; locus "HML3_19p12d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0219"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "801"; repStart "-3"; ### HML3_19p12e ### chr19 rmsk gene 21672129 21673402 . - . gene_id "HML3_19p12e"; transcript_id "HML3_19p12e"; locus "HML3_19p12e"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0220"; model_cov "799"; model_pct "13.3"; chr19 rmsk exon 21672129 21672891 28853 - . gene_id "HML3_19p12e"; transcript_id "HML3_19p12e"; locus "HML3_19p12e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0220"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "5219"; repStart "-3"; chr19 rmsk exon 21672892 21673402 4121 - . gene_id "HML3_19p12e"; transcript_id "HML3_19p12e"; locus "HML3_19p12e"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0220"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_19p12a ### chr19 rmsk gene 21679909 21684063 . + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0191"; model_cov "1263"; model_pct "14.2"; chr19 rmsk exon 21679909 21680518 3226 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 21680556 21680630 516 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "1613"; repFamily "ERV1"; repLeft "-7306"; repStart "1538"; chr19 rmsk exon 21680634 21680886 1297 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "-8402"; repStart "260"; chr19 rmsk exon 21680903 21681101 1085 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "946"; repFamily "ERV1"; repLeft "-7973"; repStart "743"; chr19 rmsk exon 21682991 21683563 5137 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-5926"; repStart "2427"; chr19 rmsk exon 21683866 21684063 5137 + . gene_id "HUERSP3_19p12a"; transcript_id "HUERSP3_19p12a"; locus "HUERSP3_19p12a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0191"; repClass "LTR"; repEnd "3156"; repFamily "ERV1"; repLeft "-5763"; repStart "2994"; ### HUERSP3_19p12b ### chr19 rmsk gene 21684366 21687992 . + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0192"; model_cov "3045"; model_pct "34.1"; chr19 rmsk exon 21684366 21684843 6068 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "-6487"; repStart "1656"; chr19 rmsk exon 21685141 21685707 6068 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "2996"; repFamily "ERV1"; repLeft "-5923"; repStart "2433"; chr19 rmsk exon 21685713 21685836 757 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "3158"; chr19 rmsk exon 21685829 21685968 820 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4538"; chr19 rmsk exon 21685970 21686450 4175 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "5400"; repFamily "ERV1"; repLeft "-3519"; repStart "4901"; chr19 rmsk exon 21686748 21686881 4175 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "5522"; repFamily "ERV1"; repLeft "-3397"; repStart "5401"; chr19 rmsk exon 21686881 21687412 3181 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "6749"; repFamily "ERV1"; repLeft "-2170"; repStart "6205"; chr19 rmsk exon 21687706 21687866 3181 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "6908"; repFamily "ERV1"; repLeft "-2011"; repStart "6750"; chr19 rmsk exon 21687879 21687992 564 + . gene_id "HUERSP3_19p12b"; transcript_id "HUERSP3_19p12b"; locus "HUERSP3_19p12b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0192"; repClass "LTR"; repEnd "6976"; repFamily "ERV1"; repLeft "-1943"; repStart "6862"; ### HERVS71_19p12b ### chr19 rmsk gene 21688200 21697956 . - . gene_id "HERVS71_19p12b"; transcript_id "HERVS71_19p12b"; locus "HERVS71_19p12b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0046"; model_cov "8905"; model_pct "99.2"; chr19 rmsk exon 21688200 21688705 2465 - . gene_id "HERVS71_19p12b"; transcript_id "HERVS71_19p12b"; locus "HERVS71_19p12b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0046"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "61"; repStart "-8"; chr19 rmsk exon 21688714 21697447 46552 - . gene_id "HERVS71_19p12b"; transcript_id "HERVS71_19p12b"; locus "HERVS71_19p12b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0046"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "4"; repStart "-69"; chr19 rmsk exon 21697450 21697956 2380 - . gene_id "HERVS71_19p12b"; transcript_id "HERVS71_19p12b"; locus "HERVS71_19p12b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0046"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### MER41_19p12b ### chr19 rmsk gene 21759476 21763262 . + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0510"; model_cov "1694"; model_pct "28.5"; chr19 rmsk exon 21759476 21759894 2461 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0510"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "-101"; repStart "14"; chr19 rmsk exon 21760204 21760244 5140 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0510"; repClass "LTR"; repEnd "4268"; repFamily "ERV1"; repLeft "-1678"; repStart "4228"; chr19 rmsk exon 21760513 21760747 5140 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0510"; repClass "LTR"; repEnd "4493"; repFamily "ERV1"; repLeft "-1453"; repStart "4269"; chr19 rmsk exon 21761058 21761946 5140 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0510"; repClass "LTR"; repEnd "5414"; repFamily "ERV1"; repLeft "-532"; repStart "4494"; chr19 rmsk exon 21762195 21762695 5140 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0510"; repClass "LTR"; repEnd "5925"; repFamily "ERV1"; repLeft "-21"; repStart "5415"; chr19 rmsk exon 21762732 21763262 3260 + . gene_id "MER41_19p12b"; transcript_id "MER41_19p12b"; locus "MER41_19p12b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0510"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### HML6_19p12c ### chr19 rmsk gene 21786150 21792221 . - . gene_id "HML6_19p12c"; transcript_id "HML6_19p12c"; locus "HML6_19p12c"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0084"; model_cov "5409"; model_pct "75.1"; chr19 rmsk exon 21786150 21786574 2774 - . gene_id "HML6_19p12c"; transcript_id "HML6_19p12c"; locus "HML6_19p12c"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0084"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "2"; repStart "-55"; chr19 rmsk exon 21786578 21787511 27123 - . gene_id "HML6_19p12c"; transcript_id "HML6_19p12c"; locus "HML6_19p12c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0084"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6276"; repStart "-2"; chr19 rmsk exon 21787829 21792221 27123 - . gene_id "HML6_19p12c"; transcript_id "HML6_19p12c"; locus "HML6_19p12c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0084"; repClass "LTR"; repEnd "6275"; repFamily "ERVK"; repLeft "1790"; repStart "-927"; ### ERVLE_19p12 ### chr19 rmsk gene 21792238 21794236 . - . gene_id "ERVLE_19p12"; transcript_id "ERVLE_19p12"; locus "ERVLE_19p12"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3431"; model_cov "1630"; model_pct "28.8"; chr19 rmsk exon 21792238 21792839 772 - . gene_id "ERVLE_19p12"; transcript_id "ERVLE_19p12"; locus "ERVLE_19p12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3431"; repClass "LTR"; repEnd "4595"; repFamily "ERVL"; repLeft "3957"; repStart "-1072"; chr19 rmsk exon 21793142 21793824 772 - . gene_id "ERVLE_19p12"; transcript_id "ERVLE_19p12"; locus "ERVLE_19p12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3431"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3230"; repStart "-1711"; chr19 rmsk exon 21793974 21794236 681 - . gene_id "ERVLE_19p12"; transcript_id "ERVLE_19p12"; locus "ERVLE_19p12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3431"; repClass "LTR"; repEnd "3060"; repFamily "ERVL"; repLeft "2794"; repStart "-2607"; ### HERVH_19p12e ### chr19 rmsk gene 21858084 21863893 . + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1157"; model_cov "5717"; model_pct "74.1"; chr19 rmsk exon 21858084 21858510 2176 + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1157"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 21858511 21862805 19504 + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1157"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "-1935"; repStart "1060"; chr19 rmsk exon 21862806 21863239 2255 + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1157"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6489"; chr19 rmsk exon 21863291 21863833 3581 + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1157"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr19 rmsk exon 21863835 21863893 335 + . gene_id "HERVH_19p12e"; transcript_id "HERVH_19p12e"; locus "HERVH_19p12e"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1157"; repClass "LTR"; repEnd "90"; repFamily "ERV1"; repLeft "-381"; repStart "9"; ### HML4_19p12 ### chr19 rmsk gene 21880252 21890542 . - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0024"; model_cov "8004"; model_pct "98.6"; chr19 rmsk exon 21880252 21881272 7791 - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0024"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 21881273 21888355 31041 - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0024"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "963"; repStart "0"; chr19 rmsk exon 21888590 21888691 283 - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0024"; repClass "LTR"; repEnd "878"; repFamily "ERVK"; repLeft "762"; repStart "-7238"; chr19 rmsk exon 21888784 21889521 3320 - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0024"; repClass "LTR"; repEnd "736"; repFamily "ERVK"; repLeft "1"; repStart "-7380"; chr19 rmsk exon 21889522 21890542 7610 - . gene_id "HML4_19p12"; transcript_id "HML4_19p12"; locus "HML4_19p12"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0024"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVFRD_19p12 ### chr19 rmsk gene 21911650 21913452 . - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0170"; model_cov "895"; model_pct "12.4"; chr19 rmsk exon 21911650 21911922 1388 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0170"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "433"; repStart "-23"; chr19 rmsk exon 21911925 21911976 391 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0170"; repClass "LTR"; repEnd "229"; repFamily "ERV1"; repLeft "178"; repStart "-505"; chr19 rmsk exon 21911985 21912091 652 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0170"; repClass "LTR"; repEnd "1548"; repFamily "ERV1"; repLeft "1439"; repStart "-5657"; chr19 rmsk exon 21912123 21912892 4658 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0170"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "1"; repStart "-6418"; chr19 rmsk exon 21912935 21913219 1796 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0170"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "433"; repStart "-23"; chr19 rmsk exon 21913222 21913452 1480 - . gene_id "HERVFRD_19p12"; transcript_id "HERVFRD_19p12"; locus "HERVFRD_19p12"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0170"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "1"; repStart "-504"; ### MER41_19p12c ### chr19 rmsk gene 21924274 21926892 . - . gene_id "MER41_19p12c"; transcript_id "MER41_19p12c"; locus "MER41_19p12c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0511"; model_cov "2195"; model_pct "36.9"; chr19 rmsk exon 21924274 21924742 2671 - . gene_id "MER41_19p12c"; transcript_id "MER41_19p12c"; locus "MER41_19p12c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0511"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "79"; repStart "-86"; chr19 rmsk exon 21924746 21925508 9813 - . gene_id "MER41_19p12c"; transcript_id "MER41_19p12c"; locus "MER41_19p12c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0511"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "4321"; repStart "-857"; chr19 rmsk exon 21925824 21926892 9813 - . gene_id "MER41_19p12c"; transcript_id "MER41_19p12c"; locus "MER41_19p12c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0511"; repClass "LTR"; repEnd "4320"; repFamily "ERV1"; repLeft "2893"; repStart "-1626"; ### LTR25_19p12a ### chr19 rmsk gene 21945796 21951669 . + . gene_id "LTR25_19p12a"; transcript_id "LTR25_19p12a"; locus "LTR25_19p12a"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0125"; model_cov "5010"; model_pct "69.7"; chr19 rmsk exon 21945796 21946630 5098 + . gene_id "LTR25_19p12a"; transcript_id "LTR25_19p12a"; locus "LTR25_19p12a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0125"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 21946631 21950488 19794 + . gene_id "LTR25_19p12a"; transcript_id "LTR25_19p12a"; locus "LTR25_19p12a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0125"; repClass "LTR"; repEnd "4127"; repFamily "ERV1"; repLeft "-3061"; repStart "1"; chr19 rmsk exon 21950795 21951669 19794 + . gene_id "LTR25_19p12a"; transcript_id "LTR25_19p12a"; locus "LTR25_19p12a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0125"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-2176"; repStart "4128"; ### LTR25_19p12b ### chr19 rmsk gene 21956973 21958924 . + . gene_id "LTR25_19p12b"; transcript_id "LTR25_19p12b"; locus "LTR25_19p12b"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0126"; model_cov "1199"; model_pct "16.7"; chr19 rmsk exon 21956973 21957037 7352 + . gene_id "LTR25_19p12b"; transcript_id "LTR25_19p12b"; locus "LTR25_19p12b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0126"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "-1142"; repStart "5987"; chr19 rmsk exon 21957337 21957837 7352 + . gene_id "LTR25_19p12b"; transcript_id "LTR25_19p12b"; locus "LTR25_19p12b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0126"; repClass "LTR"; repEnd "6515"; repFamily "ERV1"; repLeft "-673"; repStart "6047"; chr19 rmsk exon 21958157 21958834 7352 + . gene_id "LTR25_19p12b"; transcript_id "LTR25_19p12b"; locus "LTR25_19p12b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0126"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "6516"; chr19 rmsk exon 21958835 21958924 552 + . gene_id "LTR25_19p12b"; transcript_id "LTR25_19p12b"; locus "LTR25_19p12b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0126"; repClass "LTR"; repEnd "90"; repFamily "ERV1"; repLeft "-754"; repStart "1"; ### HERVL_19p12a ### chr19 rmsk gene 22020514 22025692 . - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1203"; model_cov "4147"; model_pct "73.3"; chr19 rmsk exon 22020514 22021421 31543 - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1203"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "3244"; repStart "-1503"; chr19 rmsk exon 22021750 22024692 31543 - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1203"; repClass "LTR"; repEnd "3243"; repFamily "ERVL"; repLeft "266"; repStart "-2411"; chr19 rmsk exon 22024910 22025173 31543 - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1203"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "2"; repStart "-5389"; chr19 rmsk exon 22025174 22025252 3167 - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1203"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "396"; repStart "0"; chr19 rmsk exon 22025296 22025692 3167 - . gene_id "HERVL_19p12a"; transcript_id "HERVL_19p12a"; locus "HERVL_19p12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1203"; repClass "LTR"; repEnd "395"; repFamily "ERVL"; repLeft "1"; repStart "-49"; ### MER41_19p12d ### chr19 rmsk gene 22036672 22039424 . + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0512"; model_cov "1723"; model_pct "29.0"; chr19 rmsk exon 22036672 22036805 549 + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0512"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr19 rmsk exon 22036807 22037060 1399 + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0512"; repClass "LTR"; repEnd "279"; repFamily "ERV1"; repLeft "-5667"; repStart "2"; chr19 rmsk exon 22037388 22038057 8617 + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0512"; repClass "LTR"; repEnd "5022"; repFamily "ERV1"; repLeft "-924"; repStart "4341"; chr19 rmsk exon 22038357 22038852 8617 + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0512"; repClass "LTR"; repEnd "5505"; repFamily "ERV1"; repLeft "-441"; repStart "5023"; chr19 rmsk exon 22039150 22039424 8617 + . gene_id "MER41_19p12d"; transcript_id "MER41_19p12d"; locus "MER41_19p12d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0512"; repClass "LTR"; repEnd "5789"; repFamily "ERV1"; repLeft "-157"; repStart "5506"; ### MER61_19p12a ### chr19 rmsk gene 22110276 22114541 . - . gene_id "MER61_19p12a"; transcript_id "MER61_19p12a"; locus "MER61_19p12a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0355"; model_cov "2005"; model_pct "38.4"; chr19 rmsk exon 22110276 22111914 10083 - . gene_id "MER61_19p12a"; transcript_id "MER61_19p12a"; locus "MER61_19p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0355"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "2655"; repStart "-1224"; chr19 rmsk exon 22112210 22112744 9420 - . gene_id "MER61_19p12a"; transcript_id "MER61_19p12a"; locus "MER61_19p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0355"; repClass "LTR"; repEnd "2654"; repFamily "ERV1"; repLeft "2227"; repStart "-2563"; chr19 rmsk exon 22114305 22114541 1214 - . gene_id "MER61_19p12a"; transcript_id "MER61_19p12a"; locus "MER61_19p12a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0355"; repClass "LTR"; repEnd "2040"; repFamily "ERV1"; repLeft "1800"; repStart "-3177"; ### LTR25_19p12c ### chr19 rmsk gene 22143379 22148364 . + . gene_id "LTR25_19p12c"; transcript_id "LTR25_19p12c"; locus "LTR25_19p12c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0127"; model_cov "4747"; model_pct "66.0"; chr19 rmsk exon 22143379 22143561 27851 + . gene_id "LTR25_19p12c"; transcript_id "LTR25_19p12c"; locus "LTR25_19p12c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0127"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "-6743"; repStart "263"; chr19 rmsk exon 22143587 22147192 27851 + . gene_id "LTR25_19p12c"; transcript_id "LTR25_19p12c"; locus "LTR25_19p12c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0127"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "-3060"; repStart "446"; chr19 rmsk exon 22147491 22148364 27851 + . gene_id "LTR25_19p12c"; transcript_id "LTR25_19p12c"; locus "LTR25_19p12c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0127"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "-2176"; repStart "4129"; ### LTR25_19p12d ### chr19 rmsk gene 22154510 22155500 . + . gene_id "LTR25_19p12d"; transcript_id "LTR25_19p12d"; locus "LTR25_19p12d"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0128"; model_cov "1003"; model_pct "14.0"; chr19 rmsk exon 22154510 22155500 5892 + . gene_id "LTR25_19p12d"; transcript_id "LTR25_19p12d"; locus "LTR25_19p12d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0128"; repClass "LTR"; repEnd "6004"; repFamily "ERV1"; repLeft "-1184"; repStart "5001"; ### LTR25_19p12e ### chr19 rmsk gene 22161661 22163244 . + . gene_id "LTR25_19p12e"; transcript_id "LTR25_19p12e"; locus "LTR25_19p12e"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0129"; model_cov "1200"; model_pct "16.7"; chr19 rmsk exon 22161661 22161724 7353 + . gene_id "LTR25_19p12e"; transcript_id "LTR25_19p12e"; locus "LTR25_19p12e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0129"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "-1142"; repStart "5987"; chr19 rmsk exon 22162017 22163151 7353 + . gene_id "LTR25_19p12e"; transcript_id "LTR25_19p12e"; locus "LTR25_19p12e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0129"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "6047"; chr19 rmsk exon 22163152 22163244 536 + . gene_id "LTR25_19p12e"; transcript_id "LTR25_19p12e"; locus "LTR25_19p12e"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0129"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "-751"; repStart "1"; ### HML6_19p12d ### chr19 rmsk gene 22193241 22196548 . + . gene_id "HML6_19p12d"; transcript_id "HML6_19p12d"; locus "HML6_19p12d"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0085"; model_cov "2866"; model_pct "39.8"; chr19 rmsk exon 22193241 22195335 11031 + . gene_id "HML6_19p12d"; transcript_id "HML6_19p12d"; locus "HML6_19p12d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0085"; repClass "LTR"; repEnd "2312"; repFamily "ERVK"; repLeft "-4890"; repStart "225"; chr19 rmsk exon 22195338 22196117 5510 + . gene_id "HML6_19p12d"; transcript_id "HML6_19p12d"; locus "HML6_19p12d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0085"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "6421"; chr19 rmsk exon 22196120 22196548 3118 + . gene_id "HML6_19p12d"; transcript_id "HML6_19p12d"; locus "HML6_19p12d"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0085"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_19p12b ### chr19 rmsk gene 22233735 22239053 . - . gene_id "HERVL_19p12b"; transcript_id "HERVL_19p12b"; locus "HERVL_19p12b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1204"; model_cov "4136"; model_pct "73.2"; chr19 rmsk exon 22233735 22234651 7393 - . gene_id "HERVL_19p12b"; transcript_id "HERVL_19p12b"; locus "HERVL_19p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1204"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "3236"; repStart "-1503"; chr19 rmsk exon 22235168 22238131 24367 - . gene_id "HERVL_19p12b"; transcript_id "HERVL_19p12b"; locus "HERVL_19p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1204"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "261"; repStart "-2405"; chr19 rmsk exon 22238350 22238585 24367 - . gene_id "HERVL_19p12b"; transcript_id "HERVL_19p12b"; locus "HERVL_19p12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1204"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "27"; repStart "-5394"; chr19 rmsk exon 22238612 22239053 3280 - . gene_id "HERVL_19p12b"; transcript_id "HERVL_19p12b"; locus "HERVL_19p12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1204"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER41_19p12e ### chr19 rmsk gene 22247754 22252110 . + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; category "internal"; intModel "MER41-int"; locid "MER41-int_0514"; model_cov "1849"; model_pct "31.1"; chr19 rmsk exon 22247754 22247859 687 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "-489"; repFamily "ERV1"; repLeft "-6435"; repStart "-593"; chr19 rmsk exon 22248500 22248713 1266 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "668"; repFamily "ERV1"; repLeft "-5278"; repStart "449"; chr19 rmsk exon 22248684 22248719 297 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "2238"; repFamily "ERV1"; repLeft "-3708"; repStart "2203"; chr19 rmsk exon 22249030 22249401 3199 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "2617"; repFamily "ERV1"; repLeft "-3329"; repStart "2355"; chr19 rmsk exon 22249712 22249901 3199 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-3157"; repStart "2618"; chr19 rmsk exon 22250203 22250410 3199 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "3005"; repFamily "ERV1"; repLeft "-2941"; repStart "2790"; chr19 rmsk exon 22250639 22250711 4965 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "5022"; repFamily "ERV1"; repLeft "-924"; repStart "4947"; chr19 rmsk exon 22251012 22251509 4965 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "5505"; repFamily "ERV1"; repLeft "-441"; repStart "5023"; chr19 rmsk exon 22251805 22252110 4965 + . gene_id "MER41_19p12e"; transcript_id "MER41_19p12e"; locus "MER41_19p12e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0514"; repClass "LTR"; repEnd "5792"; repFamily "ERV1"; repLeft "-154"; repStart "5506"; ### HARLEQUIN_19p12c ### chr19 rmsk gene 22268382 22273613 . - . gene_id "HARLEQUIN_19p12c"; transcript_id "HARLEQUIN_19p12c"; locus "HARLEQUIN_19p12c"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0164"; model_cov "4378"; model_pct "63.5"; chr19 rmsk exon 22268382 22268825 3617 - . gene_id "HARLEQUIN_19p12c"; transcript_id "HARLEQUIN_19p12c"; locus "HARLEQUIN_19p12c"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0164"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "15"; repStart "-1"; chr19 rmsk exon 22268826 22273154 25669 - . gene_id "HARLEQUIN_19p12c"; transcript_id "HARLEQUIN_19p12c"; locus "HARLEQUIN_19p12c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0164"; repClass "LTR"; repEnd "4379"; repFamily "ERV1"; repLeft "1"; repStart "-2517"; chr19 rmsk exon 22273155 22273613 3542 - . gene_id "HARLEQUIN_19p12c"; transcript_id "HARLEQUIN_19p12c"; locus "HARLEQUIN_19p12c"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0164"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_19p12d ### chr19 rmsk gene 22355193 22362588 . - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0165"; model_cov "6209"; model_pct "90.0"; chr19 rmsk exon 22355193 22355656 3458 - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0165"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 22355657 22356733 7449 - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0165"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5810"; repStart "0"; chr19 rmsk exon 22356719 22358055 37806 - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0165"; repClass "LTR"; repEnd "5125"; repFamily "ERV1"; repLeft "3794"; repStart "-1771"; chr19 rmsk exon 22358344 22362118 37806 - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0165"; repClass "LTR"; repEnd "3793"; repFamily "ERV1"; repLeft "1"; repStart "-3103"; chr19 rmsk exon 22362119 22362588 3446 - . gene_id "HARLEQUIN_19p12d"; transcript_id "HARLEQUIN_19p12d"; locus "HARLEQUIN_19p12d"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0165"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_19p12b ### chr19 rmsk gene 22429032 22432142 . - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0755"; model_cov "1228"; model_pct "18.6"; chr19 rmsk exon 22429032 22429646 3342 - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0755"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 22429651 22430489 3740 - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0755"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5759"; repStart "0"; chr19 rmsk exon 22431092 22431390 1964 - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0755"; repClass "LTR"; repEnd "5520"; repFamily "ERV1"; repLeft "5277"; repStart "-1078"; chr19 rmsk exon 22431686 22431755 1964 - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0755"; repClass "LTR"; repEnd "5276"; repFamily "ERV1"; repLeft "5223"; repStart "-1322"; chr19 rmsk exon 22432051 22432142 1964 - . gene_id "MER4_19p12b"; transcript_id "MER4_19p12b"; locus "MER4_19p12b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0755"; repClass "LTR"; repEnd "5222"; repFamily "ERV1"; repLeft "5129"; repStart "-1376"; ### HERV3_19p12c ### chr19 rmsk gene 22484604 22488348 . - . gene_id "HERV3_19p12c"; transcript_id "HERV3_19p12c"; locus "HERV3_19p12c"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0069"; model_cov "3736"; model_pct "44.3"; chr19 rmsk exon 22484604 22485665 5420 - . gene_id "HERV3_19p12c"; transcript_id "HERV3_19p12c"; locus "HERV3_19p12c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0069"; repClass "LTR"; repEnd "8423"; repFamily "ERV1"; repLeft "7359"; repStart "-3"; chr19 rmsk exon 22485670 22488348 13844 - . gene_id "HERV3_19p12c"; transcript_id "HERV3_19p12c"; locus "HERV3_19p12c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0069"; repClass "LTR"; repEnd "6715"; repFamily "ERV1"; repLeft "4043"; repStart "-1711"; ### HUERSP2_19p12 ### chr19 rmsk gene 22491805 22496596 . + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0117"; model_cov "3084"; model_pct "99.9"; chr19 rmsk exon 22491805 22492480 2346 + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0117"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 22492482 22493206 19862 + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0117"; repClass "LTR"; repEnd "763"; repFamily "ERV1"; repLeft "-2325"; repStart "2"; chr19 rmsk exon 22493236 22493625 19862 + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0117"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-1942"; repStart "764"; chr19 rmsk exon 22493944 22495923 19862 + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0117"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "1147"; chr19 rmsk exon 22495924 22496596 1806 + . gene_id "HUERSP2_19p12"; transcript_id "HUERSP2_19p12"; locus "HUERSP2_19p12"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0117"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "-12"; repStart "71"; ### HERV3_19p12d ### chr19 rmsk gene 22524807 22531806 . + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0070"; model_cov "5900"; model_pct "70.0"; chr19 rmsk exon 22524807 22525369 3200 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr19 rmsk exon 22525370 22525854 1682 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "171"; repFamily "ERV1"; repLeft "-8255"; repStart "-308"; chr19 rmsk exon 22525974 22527538 7032 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "2085"; repFamily "ERV1"; repLeft "-6341"; repStart "463"; chr19 rmsk exon 22527798 22528208 1465 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "-5950"; repStart "2078"; chr19 rmsk exon 22528201 22528317 733 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-4602"; repStart "3701"; chr19 rmsk exon 22528308 22531549 15614 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "5148"; chr19 rmsk exon 22531552 22531806 1118 + . gene_id "HERV3_19p12d"; transcript_id "HERV3_19p12d"; locus "HERV3_19p12d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0070"; repClass "LTR"; repEnd "223"; repFamily "ERV1"; repLeft "-336"; repStart "1"; ### HERVH_19p12f ### chr19 rmsk gene 22568270 22575020 . + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1158"; model_cov "5874"; model_pct "76.2"; chr19 rmsk exon 22568270 22568751 3257 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 22568754 22571662 16544 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr19 rmsk exon 22571642 22571787 946 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 22571778 22574165 14681 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "3478"; chr19 rmsk exon 22574166 22574537 2665 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr19 rmsk exon 22574538 22575020 3248 + . gene_id "HERVH_19p12f"; transcript_id "HERVH_19p12f"; locus "HERVH_19p12f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1158"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML2_19p12b ### chr19 rmsk gene 22575022 22581759 . + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0111"; model_cov "4920"; model_pct "65.3"; chr19 rmsk exon 22575022 22575897 6995 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "83"; chr19 rmsk exon 22575898 22578608 22553 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1"; chr19 rmsk exon 22578587 22579173 4900 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "5536"; repFamily "ERVK"; repLeft "-2000"; repStart "4952"; chr19 rmsk exon 22579171 22580702 8329 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826"; chr19 rmsk exon 22580792 22581759 7910 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVW_19p12c ### chr19 rmsk gene 22745377 22752074 . + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0289"; model_cov "5929"; model_pct "68.7"; chr19 rmsk exon 22745377 22745895 3750 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "771"; repFamily "ERV1"; repLeft "-9"; repStart "231"; chr19 rmsk exon 22745900 22747882 15016 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "4"; chr19 rmsk exon 22747866 22751434 29389 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "2430"; chr19 rmsk exon 22751428 22751466 284 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chr19 rmsk exon 22751458 22751748 2437 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8336"; chr19 rmsk exon 22751749 22752074 2814 + . gene_id "HERVW_19p12c"; transcript_id "HERVW_19p12c"; locus "HERVW_19p12c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0289"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HUERSP3_19p12c ### chr19 rmsk gene 22877975 22882530 . + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0194"; model_cov "2934"; model_pct "32.9"; chr19 rmsk exon 22877975 22878606 3476 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 22878979 22879583 2415 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "659"; repFamily "ERV1"; repLeft "-8260"; repStart "61"; chr19 rmsk exon 22879560 22879949 1776 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "3315"; repFamily "ERV1"; repLeft "-5604"; repStart "2921"; chr19 rmsk exon 22879939 22881113 8168 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "3490"; repFamily "ERV1"; repLeft "-5429"; repStart "2310"; chr19 rmsk exon 22881438 22881595 8168 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "3649"; repFamily "ERV1"; repLeft "-5270"; repStart "3491"; chr19 rmsk exon 22881597 22882215 3578 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "5760"; repFamily "ERV1"; repLeft "-3159"; repStart "5156"; chr19 rmsk exon 22882217 22882530 1582 + . gene_id "HUERSP3_19p12c"; transcript_id "HUERSP3_19p12c"; locus "HUERSP3_19p12c"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0194"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "355"; ### HUERSP3B_19p12 ### chr19 rmsk gene 22882217 22884662 . + . gene_id "HUERSP3B_19p12"; transcript_id "HUERSP3B_19p12"; locus "HUERSP3B_19p12"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0127"; model_cov "2366"; model_pct "31.9"; chr19 rmsk exon 22882217 22882530 1582 + . gene_id "HUERSP3B_19p12"; transcript_id "HUERSP3B_19p12"; locus "HUERSP3B_19p12"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0127"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "355"; chr19 rmsk exon 22882577 22882631 325 + . gene_id "HUERSP3B_19p12"; transcript_id "HUERSP3B_19p12"; locus "HUERSP3B_19p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0127"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "-7325"; repStart "38"; chr19 rmsk exon 22882635 22882946 1258 + . gene_id "HUERSP3B_19p12"; transcript_id "HUERSP3B_19p12"; locus "HUERSP3B_19p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0127"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "251"; chr19 rmsk exon 22882953 22884662 5916 + . gene_id "HUERSP3B_19p12"; transcript_id "HUERSP3B_19p12"; locus "HUERSP3B_19p12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0127"; repClass "LTR"; repEnd "1253"; repFamily "ERV1"; repLeft "-6165"; repStart "-750"; ### MER41_19p12f ### chr19 rmsk gene 22920303 22922580 . - . gene_id "MER41_19p12f"; transcript_id "MER41_19p12f"; locus "MER41_19p12f"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0515"; model_cov "1842"; model_pct "31.0"; chr19 rmsk exon 22920303 22920776 2851 - . gene_id "MER41_19p12f"; transcript_id "MER41_19p12f"; locus "MER41_19p12f"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0515"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "75"; repStart "-86"; chr19 rmsk exon 22920777 22922539 9891 - . gene_id "MER41_19p12f"; transcript_id "MER41_19p12f"; locus "MER41_19p12f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0515"; repClass "LTR"; repEnd "5089"; repFamily "ERV1"; repLeft "3300"; repStart "-857"; chr19 rmsk exon 22922527 22922580 389 - . gene_id "MER41_19p12f"; transcript_id "MER41_19p12f"; locus "MER41_19p12f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0515"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "2893"; repStart "-3000"; ### LTR25_19p12f ### chr19 rmsk gene 22943608 22949508 . + . gene_id "LTR25_19p12f"; transcript_id "LTR25_19p12f"; locus "LTR25_19p12f"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0130"; model_cov "5008"; model_pct "69.7"; chr19 rmsk exon 22943608 22944438 5139 + . gene_id "LTR25_19p12f"; transcript_id "LTR25_19p12f"; locus "LTR25_19p12f"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0130"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 22944439 22948325 28988 + . gene_id "LTR25_19p12f"; transcript_id "LTR25_19p12f"; locus "LTR25_19p12f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0130"; repClass "LTR"; repEnd "4127"; repFamily "ERV1"; repLeft "-3061"; repStart "1"; chr19 rmsk exon 22948632 22949508 28988 + . gene_id "LTR25_19p12f"; transcript_id "LTR25_19p12f"; locus "LTR25_19p12f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0130"; repClass "LTR"; repEnd "5010"; repFamily "ERV1"; repLeft "-2178"; repStart "4128"; ### LTR25_19p12g ### chr19 rmsk gene 22955673 22958652 . + . gene_id "LTR25_19p12g"; transcript_id "LTR25_19p12g"; locus "LTR25_19p12g"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0131"; model_cov "2191"; model_pct "30.5"; chr19 rmsk exon 22955673 22956157 6348 + . gene_id "LTR25_19p12g"; transcript_id "LTR25_19p12g"; locus "LTR25_19p12g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0131"; repClass "LTR"; repEnd "5477"; repFamily "ERV1"; repLeft "-1711"; repStart "4999"; chr19 rmsk exon 22956452 22957017 6348 + . gene_id "LTR25_19p12g"; transcript_id "LTR25_19p12g"; locus "LTR25_19p12g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0131"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "-1142"; repStart "5478"; chr19 rmsk exon 22957414 22958561 7613 + . gene_id "LTR25_19p12g"; transcript_id "LTR25_19p12g"; locus "LTR25_19p12g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0131"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "6043"; chr19 rmsk exon 22958562 22958652 538 + . gene_id "LTR25_19p12g"; transcript_id "LTR25_19p12g"; locus "LTR25_19p12g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0131"; repClass "LTR"; repEnd "90"; repFamily "ERV1"; repLeft "-754"; repStart "1"; ### HERVL_19p12c ### chr19 rmsk gene 23010769 23014691 . - . gene_id "HERVL_19p12c"; transcript_id "HERVL_19p12c"; locus "HERVL_19p12c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1205"; model_cov "2918"; model_pct "51.6"; chr19 rmsk exon 23010769 23012519 21655 - . gene_id "HERVL_19p12c"; transcript_id "HERVL_19p12c"; locus "HERVL_19p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1205"; repClass "LTR"; repEnd "2921"; repFamily "ERVL"; repLeft "1182"; repStart "-2733"; chr19 rmsk exon 23012823 23013732 21655 - . gene_id "HERVL_19p12c"; transcript_id "HERVL_19p12c"; locus "HERVL_19p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1205"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "266"; repStart "-4473"; chr19 rmsk exon 23014031 23014286 21655 - . gene_id "HERVL_19p12c"; transcript_id "HERVL_19p12c"; locus "HERVL_19p12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1205"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "1"; repStart "-5389"; chr19 rmsk exon 23014287 23014691 3113 - . gene_id "HERVL_19p12c"; transcript_id "HERVL_19p12c"; locus "HERVL_19p12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1205"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_19p12g ### chr19 rmsk gene 23026429 23032231 . - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1159"; model_cov "5632"; model_pct "73.0"; chr19 rmsk exon 23026429 23026804 2337 - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1159"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19 rmsk exon 23026817 23027236 3097 - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1159"; repClass "LTR"; repEnd "7705"; repFamily "ERV1"; repLeft "7283"; repStart "-8"; chr19 rmsk exon 23027241 23029180 7158 - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1159"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4199"; repStart "-1290"; chr19 rmsk exon 23029175 23031840 13990 - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1159"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 23031841 23032231 2374 - . gene_id "HERVH_19p12g"; transcript_id "HERVH_19p12g"; locus "HERVH_19p12g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1159"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_19p12b ### chr19 rmsk gene 23032232 23034513 . - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0356"; model_cov "1060"; model_pct "20.3"; chr19 rmsk exon 23032232 23032314 1367 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0356"; repClass "LTR"; repEnd "1182"; repFamily "ERV1"; repLeft "1104"; repStart "-4035"; chr19 rmsk exon 23032572 23032717 1367 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0356"; repClass "LTR"; repEnd "1103"; repFamily "ERV1"; repLeft "957"; repStart "-4114"; chr19 rmsk exon 23032718 23032879 3059 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0356"; repClass "LTR"; repEnd "839"; repFamily "ERV1"; repLeft "684"; repStart "-4378"; chr19 rmsk exon 23033269 23033506 3059 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0356"; repClass "LTR"; repEnd "683"; repFamily "ERV1"; repLeft "436"; repStart "-4534"; chr19 rmsk exon 23033802 23034205 3059 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0356"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "1"; repStart "-4782"; chr19 rmsk exon 23034217 23034513 1404 - . gene_id "MER61_19p12b"; transcript_id "MER61_19p12b"; locus "MER61_19p12b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0356"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### MER61_19p12c ### chr19 rmsk gene 23103226 23105106 . + . gene_id "MER61_19p12c"; transcript_id "MER61_19p12c"; locus "MER61_19p12c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0357"; model_cov "1581"; model_pct "30.3"; chr19 rmsk exon 23103226 23104028 10529 + . gene_id "MER61_19p12c"; transcript_id "MER61_19p12c"; locus "MER61_19p12c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0357"; repClass "LTR"; repEnd "2818"; repFamily "ERV1"; repLeft "-2399"; repStart "2021"; chr19 rmsk exon 23104322 23105106 10529 + . gene_id "MER61_19p12c"; transcript_id "MER61_19p12c"; locus "MER61_19p12c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0357"; repClass "LTR"; repEnd "3603"; repFamily "ERV1"; repLeft "-1614"; repStart "2819"; ### HARLEQUIN_19p12e ### chr19 rmsk gene 23154532 23164276 . - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0166"; model_cov "6899"; model_pct "100.0"; chr19 rmsk exon 23154532 23154990 3623 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 23154991 23156788 36595 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5087"; repStart "0"; chr19 rmsk exon 23157100 23160227 36595 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "5086"; repFamily "ERV1"; repLeft "1994"; repStart "-1810"; chr19 rmsk exon 23161860 23162838 6996 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "2000"; repFamily "ERV1"; repLeft "933"; repStart "-4896"; chr19 rmsk exon 23162887 23163821 6996 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "932"; repFamily "ERV1"; repLeft "1"; repStart "-5964"; chr19 rmsk exon 23163822 23164276 3644 - . gene_id "HARLEQUIN_19p12e"; transcript_id "HARLEQUIN_19p12e"; locus "HARLEQUIN_19p12e"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0166"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### LTR19_19p12 ### chr19 rmsk gene 23169122 23172493 . + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0055"; model_cov "1710"; model_pct "30.6"; chr19 rmsk exon 23169122 23169168 12595 + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0055"; repClass "LTR"; repEnd "3921"; repFamily "ERV1"; repLeft "-1665"; repStart "3873"; chr19 rmsk exon 23169466 23170520 12595 + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0055"; repClass "LTR"; repEnd "4949"; repFamily "ERV1"; repLeft "-637"; repStart "3922"; chr19 rmsk exon 23171119 23171150 12595 + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0055"; repClass "LTR"; repEnd "4970"; repFamily "ERV1"; repLeft "-616"; repStart "4950"; chr19 rmsk exon 23171439 23172048 12595 + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0055"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "4971"; chr19 rmsk exon 23172049 23172493 3031 + . gene_id "LTR19_19p12"; transcript_id "LTR19_19p12"; locus "LTR19_19p12"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0055"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_19p12h ### chr19 rmsk gene 23176980 23179743 . + . gene_id "HERVH_19p12h"; transcript_id "HERVH_19p12h"; locus "HERVH_19p12h"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1160"; model_cov "1509"; model_pct "19.6"; chr19 rmsk exon 23176980 23177389 2583 + . gene_id "HERVH_19p12h"; transcript_id "HERVH_19p12h"; locus "HERVH_19p12h"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1160"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 23177390 23177823 1954 + . gene_id "HERVH_19p12h"; transcript_id "HERVH_19p12h"; locus "HERVH_19p12h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1160"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-7244"; repStart "1"; chr19 rmsk exon 23178790 23179743 3914 + . gene_id "HERVH_19p12h"; transcript_id "HERVH_19p12h"; locus "HERVH_19p12h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1160"; repClass "LTR"; repEnd "3334"; repFamily "ERV1"; repLeft "-4379"; repStart "2293"; ### HERVS71_19p12c ### chr19 rmsk gene 23179744 23186831 . - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0047"; model_cov "6154"; model_pct "68.5"; chr19 rmsk exon 23179744 23180299 4768 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 23180300 23180615 2335 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr19 rmsk exon 23180613 23182319 12183 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "6070"; repStart "-1192"; chr19 rmsk exon 23182301 23183155 5958 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "5694"; repFamily "ERV1"; repLeft "4803"; repStart "-3284"; chr19 rmsk exon 23183138 23186272 18266 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "4"; repStart "-5742"; chr19 rmsk exon 23186277 23186831 4725 - . gene_id "HERVS71_19p12c"; transcript_id "HERVS71_19p12c"; locus "HERVS71_19p12c"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0047"; repClass "LTR"; repEnd "556"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19p12i ### chr19 rmsk gene 23186832 23188026 . + . gene_id "HERVH_19p12i"; transcript_id "HERVH_19p12i"; locus "HERVH_19p12i"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_1161"; model_cov "1133"; model_pct "14.7"; chr19 rmsk exon 23186832 23188026 4476 + . gene_id "HERVH_19p12i"; transcript_id "HERVH_19p12i"; locus "HERVH_19p12i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1161"; repClass "LTR"; repEnd "4464"; repFamily "ERV1"; repLeft "-3249"; repStart "3331"; ### HERVH_19p12j ### chr19 rmsk gene 23188262 23189033 . - . gene_id "HERVH_19p12j"; transcript_id "HERVH_19p12j"; locus "HERVH_19p12j"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_1162"; model_cov "771"; model_pct "10.0"; chr19 rmsk exon 23188262 23189033 5825 - . gene_id "HERVH_19p12j"; transcript_id "HERVH_19p12j"; locus "HERVH_19p12j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1162"; repClass "LTR"; repEnd "5306"; repFamily "ERV1"; repLeft "4535"; repStart "-2407"; ### HERVH48_19p12b ### chr19 rmsk gene 23344732 23350997 . + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0051"; model_cov "4634"; model_pct "69.6"; chr19 rmsk exon 23344732 23344908 876 + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0051"; repClass "LTR"; repEnd "206"; repFamily "ERV1"; repLeft "-201"; repStart "1"; chr19 rmsk exon 23344909 23346593 10040 + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0051"; repClass "LTR"; repEnd "1811"; repFamily "ERV1"; repLeft "-4843"; repStart "81"; chr19 rmsk exon 23346593 23348277 18063 + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0051"; repClass "LTR"; repEnd "5480"; repFamily "ERV1"; repLeft "-1174"; repStart "3749"; chr19 rmsk exon 23349443 23350610 18063 + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0051"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "5481"; chr19 rmsk exon 23350611 23350997 2612 + . gene_id "HERVH48_19p12b"; transcript_id "HERVH48_19p12b"; locus "HERVH48_19p12b"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0051"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_19p12a ### chr19 rmsk gene 23513253 23517731 . - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0141"; model_cov "3707"; model_pct "47.8"; chr19 rmsk exon 23513253 23513479 1714 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "1"; repStart "-291"; chr19 rmsk exon 23513480 23514045 3823 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7194"; repStart "0"; chr19 rmsk exon 23514027 23514872 8707 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "5536"; repStart "-1361"; chr19 rmsk exon 23515187 23515587 8707 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "5535"; repFamily "ERV1"; repLeft "5148"; repStart "-2221"; chr19 rmsk exon 23515576 23515773 1149 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "4443"; repFamily "ERV1"; repLeft "4244"; repStart "-3313"; chr19 rmsk exon 23515760 23515957 11225 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "2773"; repStart "-4800"; chr19 rmsk exon 23516201 23517731 11225 - . gene_id "PRIMA41_19p12a"; transcript_id "PRIMA41_19p12a"; locus "PRIMA41_19p12a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0141"; repClass "LTR"; repEnd "2772"; repFamily "ERV1"; repLeft "1255"; repStart "-4984"; ### HML5_19p12b ### chr19 rmsk gene 23525449 23528447 . - . gene_id "HML5_19p12b"; transcript_id "HML5_19p12b"; locus "HML5_19p12b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0115"; model_cov "1930"; model_pct "28.2"; chr19 rmsk exon 23525449 23525900 3241 - . gene_id "HML5_19p12b"; transcript_id "HML5_19p12b"; locus "HML5_19p12b"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0115"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 23525901 23526866 5238 - . gene_id "HML5_19p12b"; transcript_id "HML5_19p12b"; locus "HML5_19p12b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0115"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "4544"; repStart "-1502"; chr19 rmsk exon 23526864 23527992 7063 - . gene_id "HML5_19p12b"; transcript_id "HML5_19p12b"; locus "HML5_19p12b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0115"; repClass "LTR"; repEnd "1140"; repFamily "ERVK"; repLeft "1"; repStart "-5697"; chr19 rmsk exon 23527993 23528447 3061 - . gene_id "HML5_19p12b"; transcript_id "HML5_19p12b"; locus "HML5_19p12b"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0115"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_19p12f ### chr19 rmsk gene 23532070 23540666 . + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0221"; model_cov "6582"; model_pct "100.0"; chr19 rmsk exon 23532070 23532578 3653 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 23532579 23532676 546 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "99"; repFamily "ERVK"; repLeft "-5922"; repStart "1"; chr19 rmsk exon 23534394 23534968 4368 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "85"; chr19 rmsk exon 23534969 23539796 30378 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "5855"; repFamily "ERVK"; repLeft "-166"; repStart "122"; chr19 rmsk exon 23540029 23540185 2108 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "5857"; chr19 rmsk exon 23540187 23540666 3494 + . gene_id "HML3_19p12f"; transcript_id "HML3_19p12f"; locus "HML3_19p12f"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0221"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML5_19p12c ### chr19 rmsk gene 23547631 23548789 . + . gene_id "HML5_19p12c"; transcript_id "HML5_19p12c"; locus "HML5_19p12c"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0116"; model_cov "692"; model_pct "10.1"; chr19 rmsk exon 23547631 23548109 2346 + . gene_id "HML5_19p12c"; transcript_id "HML5_19p12c"; locus "HML5_19p12c"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0116"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 23548112 23548789 4442 + . gene_id "HML5_19p12c"; transcript_id "HML5_19p12c"; locus "HML5_19p12c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0116"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "3"; ### HERVH_19p12k ### chr19 rmsk gene 23549493 23555054 . + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1163"; model_cov "5036"; model_pct "65.3"; chr19 rmsk exon 23549493 23549907 2143 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 23549908 23550417 1076 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr19 rmsk exon 23550441 23553364 15718 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "3701"; repFamily "ERV1"; repLeft "-4012"; repStart "794"; chr19 rmsk exon 23553332 23553878 2239 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "5776"; repFamily "ERV1"; repLeft "-1937"; repStart "4872"; chr19 rmsk exon 23553855 23554044 1189 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6758"; chr19 rmsk exon 23554039 23554094 318 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr19 rmsk exon 23554096 23554632 3442 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr19 rmsk exon 23554633 23555054 2129 + . gene_id "HERVH_19p12k"; transcript_id "HERVH_19p12k"; locus "HERVH_19p12k"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1163"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_19p12d ### chr19 rmsk gene 23555115 23558908 . + . gene_id "HML5_19p12d"; transcript_id "HML5_19p12d"; locus "HML5_19p12d"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0117"; model_cov "2895"; model_pct "42.3"; chr19 rmsk exon 23555115 23557002 13126 + . gene_id "HML5_19p12d"; transcript_id "HML5_19p12d"; locus "HML5_19p12d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0117"; repClass "LTR"; repEnd "4233"; repFamily "ERVK"; repLeft "-2604"; repStart "2327"; chr19 rmsk exon 23557002 23557849 6505 + . gene_id "HML5_19p12d"; transcript_id "HML5_19p12d"; locus "HML5_19p12d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0117"; repClass "LTR"; repEnd "5245"; repFamily "ERVK"; repLeft "-1592"; repStart "4344"; chr19 rmsk exon 23558156 23558433 6505 + . gene_id "HML5_19p12d"; transcript_id "HML5_19p12d"; locus "HML5_19p12d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0117"; repClass "LTR"; repEnd "5334"; repFamily "ERVK"; repLeft "-1503"; repStart "5246"; chr19 rmsk exon 23558434 23558908 2396 + . gene_id "HML5_19p12d"; transcript_id "HML5_19p12d"; locus "HML5_19p12d"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0117"; repClass "LTR"; repEnd "522"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### HML3_19p12g ### chr19 rmsk gene 23572700 23577318 . - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0222"; model_cov "3778"; model_pct "62.7"; chr19 rmsk exon 23572700 23573086 3945 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "396"; repFamily "ERVK"; repLeft "1"; repStart "-117"; chr19 rmsk exon 23573087 23574482 11324 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4594"; repStart "0"; chr19 rmsk exon 23574482 23574702 1846 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr19 rmsk exon 23574703 23576215 12568 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1280"; repStart "-3223"; chr19 rmsk exon 23576216 23576809 4900 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chr19 rmsk exon 23576810 23577318 4072 - . gene_id "HML3_19p12g"; transcript_id "HML3_19p12g"; locus "HML3_19p12g"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0222"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV4_19p12 ### chr19 rmsk gene 23666052 23671676 . + . gene_id "HERV4_19p12"; transcript_id "HERV4_19p12"; locus "HERV4_19p12"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0127"; model_cov "2573"; model_pct "39.3"; chr19 rmsk exon 23666052 23666677 3338 + . gene_id "HERV4_19p12"; transcript_id "HERV4_19p12"; locus "HERV4_19p12"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0127"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chr19 rmsk exon 23666679 23666926 634 + . gene_id "HERV4_19p12"; transcript_id "HERV4_19p12"; locus "HERV4_19p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0127"; repClass "LTR"; repEnd "248"; repFamily "ERV1"; repLeft "-6291"; repStart "1"; chr19 rmsk exon 23669092 23669593 14507 + . gene_id "HERV4_19p12"; transcript_id "HERV4_19p12"; locus "HERV4_19p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0127"; repClass "LTR"; repEnd "726"; repFamily "ERV1"; repLeft "-5813"; repStart "227"; chr19 rmsk exon 23669876 23671676 14507 + . gene_id "HERV4_19p12"; transcript_id "HERV4_19p12"; locus "HERV4_19p12"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0127"; repClass "LTR"; repEnd "2554"; repFamily "ERV1"; repLeft "-3985"; repStart "727"; ### PRIMA41_19p12b ### chr19 rmsk gene 23700561 23704360 . + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0142"; model_cov "2549"; model_pct "32.9"; chr19 rmsk exon 23700561 23701020 3912 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "66"; chr19 rmsk exon 23701106 23701456 5158 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-7332"; repStart "1"; chr19 rmsk exon 23701757 23702228 5158 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "884"; repFamily "ERV1"; repLeft "-6872"; repStart "425"; chr19 rmsk exon 23702537 23702581 5158 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "929"; repFamily "ERV1"; repLeft "-6827"; repStart "885"; chr19 rmsk exon 23702575 23703319 10104 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "2118"; repFamily "ERV1"; repLeft "-5638"; repStart "1363"; chr19 rmsk exon 23703592 23704360 10104 + . gene_id "PRIMA41_19p12b"; transcript_id "PRIMA41_19p12b"; locus "PRIMA41_19p12b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0142"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4769"; repStart "2119"; ### HUERSP3_19p12d ### chr19 rmsk gene 23720782 23725058 . - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0195"; model_cov "2168"; model_pct "24.3"; chr19 rmsk exon 23720782 23720981 5461 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "6991"; repFamily "ERV1"; repLeft "6768"; repStart "-1928"; chr19 rmsk exon 23721291 23722037 5461 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "6767"; repFamily "ERV1"; repLeft "6018"; repStart "-2152"; chr19 rmsk exon 23722579 23723000 5166 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "5989"; repFamily "ERV1"; repLeft "5566"; repStart "-2930"; chr19 rmsk exon 23723326 23723657 5166 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "5565"; repFamily "ERV1"; repLeft "5238"; repStart "-3354"; chr19 rmsk exon 23724625 23724700 5166 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "5237"; repFamily "ERV1"; repLeft "5154"; repStart "-3682"; chr19 rmsk exon 23724699 23725058 2427 - . gene_id "HUERSP3_19p12d"; transcript_id "HUERSP3_19p12d"; locus "HUERSP3_19p12d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0195"; repClass "LTR"; repEnd "3650"; repFamily "ERV1"; repLeft "3287"; repStart "-5269"; ### HERV3_19p12e ### chr19 rmsk gene 23817565 23824289 . - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0071"; model_cov "6249"; model_pct "74.2"; chr19 rmsk exon 23817565 23817793 1054 - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0071"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "360"; repStart "0"; chr19 rmsk exon 23818068 23818765 4682 - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0071"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7721"; repStart "0"; chr19 rmsk exon 23818763 23821500 16269 - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0071"; repClass "LTR"; repEnd "6481"; repFamily "ERV1"; repLeft "3408"; repStart "-1945"; chr19 rmsk exon 23821506 23823963 14165 - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0071"; repClass "LTR"; repEnd "2474"; repFamily "ERV1"; repLeft "3"; repStart "-5952"; chr19 rmsk exon 23823965 23824289 1161 - . gene_id "HERV3_19p12e"; transcript_id "HERV3_19p12e"; locus "HERV3_19p12e"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0071"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "227"; repStart "0"; ### HERVK11_19p12b ### chr19 rmsk gene 23847319 23857439 . - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0095"; model_cov "7951"; model_pct "100.0"; chr19 rmsk exon 23847319 23848284 4106 - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0095"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 23848285 23852288 59907 - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0095"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "3865"; repStart "0"; chr19 rmsk exon 23852787 23856621 59907 - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0095"; repClass "LTR"; repEnd "3864"; repFamily "ERVK"; repLeft "1"; repStart "-4089"; chr19 rmsk exon 23856622 23857181 2351 - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0095"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "649"; repStart "0"; chr19 rmsk exon 23857181 23857439 1557 - . gene_id "HERVK11_19p12b"; transcript_id "HERVK11_19p12b"; locus "HERVK11_19p12b"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0095"; repClass "LTR"; repEnd "368"; repFamily "ERVK"; repLeft "1"; repStart "-898"; ### HML6_19p12e ### chr19 rmsk gene 23864829 23871228 . + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0086"; model_cov "5601"; model_pct "77.8"; chr19 rmsk exon 23864829 23865056 1672 + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0086"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "203"; chr19 rmsk exon 23865058 23867548 11479 + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0086"; repClass "LTR"; repEnd "2627"; repFamily "ERVK"; repLeft "-4575"; repStart "1"; chr19 rmsk exon 23867849 23868285 11479 + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0086"; repClass "LTR"; repEnd "3066"; repFamily "ERVK"; repLeft "-4136"; repStart "2628"; chr19 rmsk exon 23868286 23870796 16383 + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0086"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "4663"; chr19 rmsk exon 23870799 23871228 3368 + . gene_id "HML6_19p12e"; transcript_id "HML6_19p12e"; locus "HML6_19p12e"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0086"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML5_19p12e ### chr19 rmsk gene 23882529 23886869 . - . gene_id "HML5_19p12e"; transcript_id "HML5_19p12e"; locus "HML5_19p12e"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0118"; model_cov "4882"; model_pct "71.4"; chr19 rmsk exon 23882529 23882987 2801 - . gene_id "HML5_19p12e"; transcript_id "HML5_19p12e"; locus "HML5_19p12e"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0118"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 23882988 23884626 9554 - . gene_id "HML5_19p12e"; transcript_id "HML5_19p12e"; locus "HML5_19p12e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0118"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "3874"; repStart "0"; chr19 rmsk exon 23884958 23886219 8446 - . gene_id "HML5_19p12e"; transcript_id "HML5_19p12e"; locus "HML5_19p12e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0118"; repClass "LTR"; repEnd "3613"; repFamily "ERVK"; repLeft "2326"; repStart "-3224"; chr19 rmsk exon 23886215 23886869 3693 - . gene_id "HML5_19p12e"; transcript_id "HML5_19p12e"; locus "HML5_19p12e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0118"; repClass "LTR"; repEnd "794"; repFamily "ERVK"; repLeft "162"; repStart "-6043"; ### HML5_19p12f ### chr19 rmsk gene 23902474 23906068 . + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0120"; model_cov "1859"; model_pct "27.2"; chr19 rmsk exon 23902474 23902689 1344 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "239"; chr19 rmsk exon 23902763 23902829 350 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "157"; repFamily "ERVK"; repLeft "-6680"; repStart "91"; chr19 rmsk exon 23903139 23904160 5941 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "1143"; repFamily "ERVK"; repLeft "-5694"; repStart "141"; chr19 rmsk exon 23904154 23904371 4718 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "4761"; repFamily "ERVK"; repLeft "-2076"; repStart "4543"; chr19 rmsk exon 23904865 23905605 4718 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "-1502"; repStart "4762"; chr19 rmsk exon 23905626 23906068 3060 + . gene_id "HML5_19p12f"; transcript_id "HML5_19p12f"; locus "HML5_19p12f"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0120"; repClass "LTR"; repEnd "457"; repFamily "ERVK"; repLeft "-1"; repStart "10"; ### PRIMA41_19p12c ### chr19 rmsk gene 23909820 23914282 . + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0143"; model_cov "3691"; model_pct "47.6"; chr19 rmsk exon 23909820 23911314 10201 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "2767"; repFamily "ERV1"; repLeft "-4989"; repStart "1252"; chr19 rmsk exon 23911570 23911769 10201 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "-4800"; repStart "2768"; chr19 rmsk exon 23911756 23911948 1013 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "4438"; repFamily "ERV1"; repLeft "-3318"; repStart "4244"; chr19 rmsk exon 23911942 23912338 7770 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "5545"; repFamily "ERV1"; repLeft "-2211"; repStart "5148"; chr19 rmsk exon 23912651 23913509 7770 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "-1361"; repStart "5546"; chr19 rmsk exon 23913506 23914052 3529 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "7208"; chr19 rmsk exon 23914053 23914282 1555 + . gene_id "PRIMA41_19p12c"; transcript_id "PRIMA41_19p12c"; locus "PRIMA41_19p12c"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0143"; repClass "LTR"; repEnd "230"; repFamily "ERV1"; repLeft "-291"; repStart "1"; ### HML1_19p12c ### chr19 rmsk gene 23950435 23956522 . - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; category "internal"; intModel "HERVK14-int"; locid "HERVK14-int_0111"; model_cov "2634"; model_pct "43.2"; chr19 rmsk exon 23950435 23950781 468 - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0111"; repClass "LTR"; repEnd "5757"; repFamily "ERVK"; repLeft "5411"; repStart "-339"; chr19 rmsk exon 23952597 23953039 484 - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0111"; repClass "LTR"; repEnd "3785"; repFamily "ERVK"; repLeft "3092"; repStart "-2311"; chr19 rmsk exon 23953718 23953915 285 - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0111"; repClass "LTR"; repEnd "3144"; repFamily "ERVK"; repLeft "2961"; repStart "-2952"; chr19 rmsk exon 23954613 23955224 1185 - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0111"; repClass "LTR"; repEnd "3101"; repFamily "ERVK"; repLeft "2400"; repStart "-2995"; chr19 rmsk exon 23955815 23956522 523 - . gene_id "HML1_19p12c"; transcript_id "HML1_19p12c"; locus "HML1_19p12c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0111"; repClass "LTR"; repEnd "1038"; repFamily "ERVK"; repLeft "327"; repStart "-5058"; ### HML3_19p12h ### chr19 rmsk gene 24005300 24007247 . - . gene_id "HML3_19p12h"; transcript_id "HML3_19p12h"; locus "HML3_19p12h"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0223"; model_cov "1954"; model_pct "32.5"; chr19 rmsk exon 24005300 24007247 15761 - . gene_id "HML3_19p12h"; transcript_id "HML3_19p12h"; locus "HML3_19p12h"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0223"; repClass "LTR"; repEnd "3478"; repFamily "ERVK"; repLeft "1524"; repStart "-2543"; ### PRIMA41_19p12d ### chr19 rmsk gene 24079035 24082362 . + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; category "unknown"; intModel "PRIMA41-int"; locid "PRIMA41-int_0144"; model_cov "2358"; model_pct "30.4"; chr19 rmsk exon 24079035 24080551 11289 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "2764"; repFamily "ERV1"; repLeft "-4992"; repStart "1259"; chr19 rmsk exon 24080797 24080812 11289 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "-4991"; repStart "2765"; chr19 rmsk exon 24081096 24081281 11289 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "-4800"; repStart "2765"; chr19 rmsk exon 24081268 24081457 956 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "4437"; repFamily "ERV1"; repLeft "-3319"; repStart "4244"; chr19 rmsk exon 24081459 24081841 2735 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "5547"; repFamily "ERV1"; repLeft "-2209"; repStart "5157"; chr19 rmsk exon 24082143 24082258 702 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-173"; repStart "228"; chr19 rmsk exon 24082287 24082362 310 + . gene_id "PRIMA41_19p12d"; transcript_id "PRIMA41_19p12d"; locus "PRIMA41_19p12d"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0144"; repClass "LTR"; repEnd "7429"; repFamily "ERV1"; repLeft "-327"; repStart "7350"; ### HML1_19p12d ### chr19 rmsk gene 24166421 24167649 . - . gene_id "HML1_19p12d"; transcript_id "HML1_19p12d"; locus "HML1_19p12d"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0113"; model_cov "785"; model_pct "12.9"; chr19 rmsk exon 24166421 24166777 1865 - . gene_id "HML1_19p12d"; transcript_id "HML1_19p12d"; locus "HML1_19p12d"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0113"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "211"; repStart "0"; chr19 rmsk exon 24166766 24166810 226 - . gene_id "HML1_19p12d"; transcript_id "HML1_19p12d"; locus "HML1_19p12d"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0113"; repClass "LTR"; repEnd "46"; repFamily "ERVK"; repLeft "1"; repStart "-562"; chr19 rmsk exon 24167005 24167188 1521 - . gene_id "HML1_19p12d"; transcript_id "HML1_19p12d"; locus "HML1_19p12d"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0113"; repClass "LTR"; repEnd "6093"; repFamily "ERVK"; repLeft "5873"; repStart "-3"; chr19 rmsk exon 24167190 24167649 1877 - . gene_id "HML1_19p12d"; transcript_id "HML1_19p12d"; locus "HML1_19p12d"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0113"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "5036"; repStart "-495"; ### HERVW_19p12d ### chr19 rmsk gene 24167650 24170276 . - . gene_id "HERVW_19p12d"; transcript_id "HERVW_19p12d"; locus "HERVW_19p12d"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0291"; model_cov "3126"; model_pct "36.2"; chr19 rmsk exon 24167650 24167698 345 - . gene_id "HERVW_19p12d"; transcript_id "HERVW_19p12d"; locus "HERVW_19p12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0291"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "433"; repStart "-8145"; chr19 rmsk exon 24167698 24167838 969 - . gene_id "HERVW_19p12d"; transcript_id "HERVW_19p12d"; locus "HERVW_19p12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0291"; repClass "LTR"; repEnd "5553"; repFamily "ERV1"; repLeft "5405"; repStart "-3073"; chr19 rmsk exon 24167818 24170276 9043 - . gene_id "HERVW_19p12d"; transcript_id "HERVW_19p12d"; locus "HERVW_19p12d"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0291"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "824"; repStart "-4872"; ### HML1_19p12e ### chr19 rmsk gene 24170315 24171486 . - . gene_id "HML1_19p12e"; transcript_id "HML1_19p12e"; locus "HML1_19p12e"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0114"; model_cov "781"; model_pct "12.8"; chr19 rmsk exon 24170315 24171090 5220 - . gene_id "HML1_19p12e"; transcript_id "HML1_19p12e"; locus "HML1_19p12e"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0114"; repClass "LTR"; repEnd "782"; repFamily "ERVK"; repLeft "1"; repStart "-5314"; chr19 rmsk exon 24171091 24171486 1676 - . gene_id "HML1_19p12e"; transcript_id "HML1_19p12e"; locus "HML1_19p12e"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0114"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVK11_19p11a ### chr19 rmsk gene 24242677 24251824 . + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0096"; model_cov "5219"; model_pct "65.6"; chr19 rmsk exon 24242677 24243588 5355 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "1120"; repFamily "ERVK"; repLeft "-116"; repStart "-28"; chr19 rmsk exon 24243638 24244556 2925 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "976"; repFamily "ERVK"; repLeft "-6977"; repStart "1"; chr19 rmsk exon 24244555 24245134 2834 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "1165"; chr19 rmsk exon 24245127 24246808 12355 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "2912"; chr19 rmsk exon 24246793 24247848 7530 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "6622"; repFamily "ERVK"; repLeft "-1331"; repStart "5465"; chr19 rmsk exon 24247997 24248490 3482 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "7493"; repFamily "ERVK"; repLeft "-460"; repStart "6982"; chr19 rmsk exon 24250303 24250767 3356 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "7486"; chr19 rmsk exon 24250768 24251824 5424 + . gene_id "HERVK11_19p11a"; transcript_id "HERVK11_19p11a"; locus "HERVK11_19p11a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0096"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11_19p11b ### chr19 rmsk gene 24270242 24273541 . + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0097"; model_cov "1275"; model_pct "16.0"; chr19 rmsk exon 24270242 24271293 5943 + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0097"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr19 rmsk exon 24271299 24271620 1956 + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0097"; repClass "LTR"; repEnd "320"; repFamily "ERVK"; repLeft "-7633"; repStart "1"; chr19 rmsk exon 24271618 24271836 1541 + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0097"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "-7524"; repStart "207"; chr19 rmsk exon 24271829 24272555 5474 + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0097"; repClass "LTR"; repEnd "7951"; repFamily "ERVK"; repLeft "-2"; repStart "7217"; chr19 rmsk exon 24272558 24273541 5302 + . gene_id "HERVK11_19p11b"; transcript_id "HERVK11_19p11b"; locus "HERVK11_19p11b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0097"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11_19p11c ### chr19 rmsk gene 24320890 24324105 . + . gene_id "HERVK11_19p11c"; transcript_id "HERVK11_19p11c"; locus "HERVK11_19p11c"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0098"; model_cov "3236"; model_pct "40.7"; chr19 rmsk exon 24320890 24324105 22568 + . gene_id "HERVK11_19p11c"; transcript_id "HERVK11_19p11c"; locus "HERVK11_19p11c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0098"; repClass "LTR"; repEnd "3390"; repFamily "ERVK"; repLeft "-4563"; repStart "154"; ### HERVK11_19p11d ### chr19 rmsk gene 24324196 24325976 . + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; category "unknown"; intModel "HERVK11-int"; locid "HERVK11-int_0100"; model_cov "1498"; model_pct "18.8"; chr19 rmsk exon 24324196 24324600 2500 + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0100"; repClass "LTR"; repEnd "1165"; repFamily "ERVK"; repLeft "-6788"; repStart "759"; chr19 rmsk exon 24324576 24325630 7820 + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0100"; repClass "LTR"; repEnd "4573"; repFamily "ERVK"; repLeft "-3380"; repStart "3519"; chr19 rmsk exon 24325638 24325668 234 + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0100"; repClass "LTR"; repEnd "475"; repFamily "ERVK"; repLeft "-596"; repStart "445"; chr19 rmsk exon 24325673 24325711 251 + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0100"; repClass "LTR"; repEnd "4589"; repFamily "ERVK"; repLeft "-3364"; repStart "4551"; chr19 rmsk exon 24325721 24325976 1588 + . gene_id "HERVK11_19p11d"; transcript_id "HERVK11_19p11d"; locus "HERVK11_19p11d"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0100"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "992"; ### HERVK11_19q11a ### chr19 rmsk gene 27578682 27582277 . + . gene_id "HERVK11_19q11a"; transcript_id "HERVK11_19q11a"; locus "HERVK11_19q11a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0101"; model_cov "2551"; model_pct "32.1"; chr19 rmsk exon 27578682 27579745 7540 + . gene_id "HERVK11_19q11a"; transcript_id "HERVK11_19q11a"; locus "HERVK11_19q11a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0101"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 27579746 27582277 17365 + . gene_id "HERVK11_19q11a"; transcript_id "HERVK11_19q11a"; locus "HERVK11_19q11a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0101"; repClass "LTR"; repEnd "2552"; repFamily "ERVK"; repLeft "-5401"; repStart "1"; ### HML2_19q11 ### chr19 rmsk gene 27637590 27646453 . - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0112"; model_cov "7438"; model_pct "98.7"; chr19 rmsk exon 27637590 27638584 8676 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 27638680 27641547 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "4584"; repStart "-95"; chr19 rmsk exon 27641861 27646453 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "4583"; repFamily "ERVK"; repLeft "2"; repStart "-2953"; ### HERVK11_19q11b ### chr19 rmsk gene 27703454 27713310 . - . gene_id "HERVK11_19q11b"; transcript_id "HERVK11_19q11b"; locus "HERVK11_19q11b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0102"; model_cov "7737"; model_pct "97.3"; chr19 rmsk exon 27703454 27704523 8227 - . gene_id "HERVK11_19q11b"; transcript_id "HERVK11_19q11b"; locus "HERVK11_19q11b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0102"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 27704524 27705523 8141 - . gene_id "HERVK11_19q11b"; transcript_id "HERVK11_19q11b"; locus "HERVK11_19q11b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0102"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6954"; repStart "0"; chr19 rmsk exon 27705508 27712211 50149 - . gene_id "HERVK11_19q11b"; transcript_id "HERVK11_19q11b"; locus "HERVK11_19q11b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0102"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "27"; repStart "-1188"; chr19 rmsk exon 27712238 27713310 8433 - . gene_id "HERVK11_19q11b"; transcript_id "HERVK11_19q11b"; locus "HERVK11_19q11b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0102"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML5_19q11 ### chr19 rmsk gene 27745824 27750223 . + . gene_id "HML5_19q11"; transcript_id "HML5_19q11"; locus "HML5_19q11"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0121"; model_cov "3326"; model_pct "48.6"; chr19 rmsk exon 27745824 27746290 2332 + . gene_id "HML5_19q11"; transcript_id "HML5_19q11"; locus "HML5_19q11"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0121"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 27746291 27747008 4391 + . gene_id "HML5_19q11"; transcript_id "HML5_19q11"; locus "HML5_19q11"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0121"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "-6096"; repStart "1"; chr19 rmsk exon 27747412 27749130 12536 + . gene_id "HML5_19q11"; transcript_id "HML5_19q11"; locus "HML5_19q11"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0121"; repClass "LTR"; repEnd "4057"; repFamily "ERVK"; repLeft "-2780"; repStart "2327"; chr19 rmsk exon 27749446 27750223 12536 + . gene_id "HML5_19q11"; transcript_id "HML5_19q11"; locus "HML5_19q11"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0121"; repClass "LTR"; repEnd "4914"; repFamily "ERVK"; repLeft "-1923"; repStart "4058"; ### HERVKC4_19q11 ### chr19 rmsk gene 27750253 27750986 . + . gene_id "HERVKC4_19q11"; transcript_id "HERVKC4_19q11"; locus "HERVKC4_19q11"; category "internal"; intModel "HERVKC4-int"; locid "HERVKC4-int_0022"; model_cov "669"; model_pct "12.7"; chr19 rmsk exon 27750253 27750986 3492 + . gene_id "HERVKC4_19q11"; transcript_id "HERVKC4_19q11"; locus "HERVKC4_19q11"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0022"; repClass "LTR"; repEnd "3528"; repFamily "ERVK"; repLeft "-1734"; repStart "2859"; ### ERVL_19q11 ### chr19 rmsk gene 27837062 27838931 . - . gene_id "ERVL_19q11"; transcript_id "ERVL_19q11"; locus "ERVL_19q11"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0436"; model_cov "1871"; model_pct "32.5"; chr19 rmsk exon 27837062 27837112 241 - . gene_id "ERVL_19q11"; transcript_id "ERVL_19q11"; locus "ERVL_19q11"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0436"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "1"; repStart "-503"; chr19 rmsk exon 27837113 27838931 8042 - . gene_id "ERVL_19q11"; transcript_id "ERVL_19q11"; locus "ERVL_19q11"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0436"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3886"; repStart "0"; ### HERVFH21_19q11 ### chr19 rmsk gene 27842327 27846933 . - . gene_id "HERVFH21_19q11"; transcript_id "HERVFH21_19q11"; locus "HERVFH21_19q11"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0038"; model_cov "4052"; model_pct "62.1"; chr19 rmsk exon 27842327 27846463 19158 - . gene_id "HERVFH21_19q11"; transcript_id "HERVFH21_19q11"; locus "HERVFH21_19q11"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0038"; repClass "LTR"; repEnd "4122"; repFamily "ERV1"; repLeft "70"; repStart "-2407"; chr19 rmsk exon 27846503 27846933 3111 - . gene_id "HERVFH21_19q11"; transcript_id "HERVFH21_19q11"; locus "HERVFH21_19q11"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0038"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19q11 ### chr19 rmsk gene 27847313 27850169 . - . gene_id "HERVL66_19q11"; transcript_id "HERVL66_19q11"; locus "HERVL66_19q11"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0041"; model_cov "2708"; model_pct "62.6"; chr19 rmsk exon 27847313 27847473 1210 - . gene_id "HERVL66_19q11"; transcript_id "HERVL66_19q11"; locus "HERVL66_19q11"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0041"; repClass "LTR"; repEnd "161"; repFamily "ERVL"; repLeft "1"; repStart "-449"; chr19 rmsk exon 27847474 27850169 21529 - . gene_id "HERVL66_19q11"; transcript_id "HERVL66_19q11"; locus "HERVL66_19q11"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0041"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "1621"; repStart "0"; ### HUERSP3_19q11 ### chr19 rmsk gene 27876948 27885917 . + . gene_id "HUERSP3_19q11"; transcript_id "HUERSP3_19q11"; locus "HUERSP3_19q11"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0197"; model_cov "7897"; model_pct "88.5"; chr19 rmsk exon 27876948 27877566 3389 + . gene_id "HUERSP3_19q11"; transcript_id "HUERSP3_19q11"; locus "HUERSP3_19q11"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0197"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 27877567 27877632 323 + . gene_id "HUERSP3_19q11"; transcript_id "HUERSP3_19q11"; locus "HUERSP3_19q11"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0197"; repClass "LTR"; repEnd "66"; repFamily "ERV1"; repLeft "-8853"; repStart "1"; chr19 rmsk exon 27877628 27885294 36175 + . gene_id "HUERSP3_19q11"; transcript_id "HUERSP3_19q11"; locus "HUERSP3_19q11"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0197"; repClass "LTR"; repEnd "8914"; repFamily "ERV1"; repLeft "-5"; repStart "1082"; chr19 rmsk exon 27885299 27885917 3632 + . gene_id "HUERSP3_19q11"; transcript_id "HUERSP3_19q11"; locus "HUERSP3_19q11"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0197"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_19q12 ### chr19 rmsk gene 28431623 28435712 . - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1164"; model_cov "3657"; model_pct "47.4"; chr19 rmsk exon 28431623 28432000 2406 - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1164"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7322"; repStart "-1"; chr19 rmsk exon 28431999 28432194 1287 - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1164"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5620"; repStart "-1894"; chr19 rmsk exon 28432187 28432271 429 - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1164"; repClass "LTR"; repEnd "3222"; repFamily "ERV1"; repLeft "3140"; repStart "-4491"; chr19 rmsk exon 28432266 28435349 16280 - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1164"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 28435352 28435712 2216 - . gene_id "HERVH_19q12"; transcript_id "HERVH_19q12"; locus "HERVH_19q12"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1164"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_19q12a ### chr19 rmsk gene 28511166 28513266 . + . gene_id "ERV316A3_19q12a"; transcript_id "ERV316A3_19q12a"; locus "ERV316A3_19q12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2621"; model_cov "2619"; model_pct "50.1"; chr19 rmsk exon 28511166 28512441 2611 + . gene_id "ERV316A3_19q12a"; transcript_id "ERV316A3_19q12a"; locus "ERV316A3_19q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2621"; repClass "LTR"; repEnd "2868"; repFamily "ERVL"; repLeft "-2358"; repStart "1309"; chr19 rmsk exon 28512431 28513266 1977 + . gene_id "ERV316A3_19q12a"; transcript_id "ERV316A3_19q12a"; locus "ERV316A3_19q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2621"; repClass "LTR"; repEnd "4336"; repFamily "ERVL"; repLeft "-890"; repStart "3276"; ### PABLA_19q12 ### chr19 rmsk gene 28522669 28528650 . + . gene_id "PABLA_19q12"; transcript_id "PABLA_19q12"; locus "PABLA_19q12"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0142"; model_cov "6651"; model_pct "100.0"; chr19 rmsk exon 28522669 28524913 6845 + . gene_id "PABLA_19q12"; transcript_id "PABLA_19q12"; locus "PABLA_19q12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0142"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "-3366"; repStart "-1245"; chr19 rmsk exon 28525251 28525579 12670 + . gene_id "PABLA_19q12"; transcript_id "PABLA_19q12"; locus "PABLA_19q12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0142"; repClass "LTR"; repEnd "2331"; repFamily "ERV1"; repLeft "-2684"; repStart "2186"; chr19 rmsk exon 28525895 28528650 12670 + . gene_id "PABLA_19q12"; transcript_id "PABLA_19q12"; locus "PABLA_19q12"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0142"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "-2"; repStart "1401"; ### HERVE_19q12 ### chr19 rmsk gene 28606436 28615273 . + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0155"; model_cov "7828"; model_pct "100.0"; chr19 rmsk exon 28606436 28606609 402 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "200"; repFamily "ERV1"; repLeft "-263"; repStart "1"; chr19 rmsk exon 28606630 28606838 1522 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "254"; chr19 rmsk exon 28606839 28607227 2582 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "350"; repFamily "ERV1"; repLeft "-7463"; repStart "-33"; chr19 rmsk exon 28607296 28607441 357 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "670"; repFamily "ERV1"; repLeft "-7143"; repStart "522"; chr19 rmsk exon 28607468 28613524 33644 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "6548"; repFamily "ERV1"; repLeft "-1265"; repStart "512"; chr19 rmsk exon 28613571 28614817 25947 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "7810"; repFamily "ERV1"; repLeft "-3"; repStart "6549"; chr19 rmsk exon 28614818 28615273 1527 + . gene_id "HERVE_19q12"; transcript_id "HERVE_19q12"; locus "HERVE_19q12"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0155"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_19q12b ### chr19 rmsk gene 29034287 29036173 . + . gene_id "ERV316A3_19q12b"; transcript_id "ERV316A3_19q12b"; locus "ERV316A3_19q12b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2622"; model_cov "1449"; model_pct "27.7"; chr19 rmsk exon 29034287 29034642 787 + . gene_id "ERV316A3_19q12b"; transcript_id "ERV316A3_19q12b"; locus "ERV316A3_19q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2622"; repClass "LTR"; repEnd "2279"; repFamily "ERVL"; repLeft "-2947"; repStart "1920"; chr19 rmsk exon 29034709 29035027 1571 + . gene_id "ERV316A3_19q12b"; transcript_id "ERV316A3_19q12b"; locus "ERV316A3_19q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2622"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "-2129"; repStart "2758"; chr19 rmsk exon 29035420 29036173 1571 + . gene_id "ERV316A3_19q12b"; transcript_id "ERV316A3_19q12b"; locus "ERV316A3_19q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2622"; repClass "LTR"; repEnd "3849"; repFamily "ERVL"; repLeft "-1377"; repStart "3098"; ### ERVLE_19q12a ### chr19 rmsk gene 29037481 29038668 . + . gene_id "ERVLE_19q12a"; transcript_id "ERVLE_19q12a"; locus "ERVLE_19q12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3432"; model_cov "884"; model_pct "15.6"; chr19 rmsk exon 29037481 29037613 336 + . gene_id "ERVLE_19q12a"; transcript_id "ERVLE_19q12a"; locus "ERVLE_19q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3432"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "-1023"; repStart "4517"; chr19 rmsk exon 29037930 29038668 1271 + . gene_id "ERVLE_19q12a"; transcript_id "ERVLE_19q12a"; locus "ERVLE_19q12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3432"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "4476"; ### ERV316A3_19q12c ### chr19 rmsk gene 29451755 29453981 . + . gene_id "ERV316A3_19q12c"; transcript_id "ERV316A3_19q12c"; locus "ERV316A3_19q12c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2624"; model_cov "1445"; model_pct "27.7"; chr19 rmsk exon 29451755 29452431 716 + . gene_id "ERV316A3_19q12c"; transcript_id "ERV316A3_19q12c"; locus "ERV316A3_19q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2624"; repClass "LTR"; repEnd "1078"; repFamily "ERVL"; repLeft "-4148"; repStart "396"; chr19 rmsk exon 29453130 29453796 716 + . gene_id "ERV316A3_19q12c"; transcript_id "ERV316A3_19q12c"; locus "ERV316A3_19q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2624"; repClass "LTR"; repEnd "1757"; repFamily "ERVL"; repLeft "-3469"; repStart "1079"; chr19 rmsk exon 29453901 29453981 311 + . gene_id "ERV316A3_19q12c"; transcript_id "ERV316A3_19q12c"; locus "ERV316A3_19q12c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2624"; repClass "LTR"; repEnd "2065"; repFamily "ERVL"; repLeft "-3161"; repStart "1980"; ### ERV316A3_19q12d ### chr19 rmsk gene 29454008 29456906 . + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2625"; model_cov "2309"; model_pct "44.2"; chr19 rmsk exon 29454008 29454334 1079 + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2625"; repClass "LTR"; repEnd "1778"; repFamily "ERVL"; repLeft "-3448"; repStart "1405"; chr19 rmsk exon 29454633 29455078 1079 + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2625"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-2998"; repStart "1779"; chr19 rmsk exon 29455115 29455908 1676 + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2625"; repClass "LTR"; repEnd "3709"; repFamily "ERVL"; repLeft "-1517"; repStart "2894"; chr19 rmsk exon 29456220 29456360 1676 + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2625"; repClass "LTR"; repEnd "3839"; repFamily "ERVL"; repLeft "-1387"; repStart "3710"; chr19 rmsk exon 29456425 29456906 542 + . gene_id "ERV316A3_19q12d"; transcript_id "ERV316A3_19q12d"; locus "ERV316A3_19q12d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2625"; repClass "LTR"; repEnd "4558"; repFamily "ERVL"; repLeft "-668"; repStart "4015"; ### ERVLE_19q12b ### chr19 rmsk gene 29732313 29736001 . - . gene_id "ERVLE_19q12b"; transcript_id "ERVLE_19q12b"; locus "ERVLE_19q12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3433"; model_cov "1782"; model_pct "31.4"; chr19 rmsk exon 29732313 29732423 343 - . gene_id "ERVLE_19q12b"; transcript_id "ERVLE_19q12b"; locus "ERVLE_19q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3433"; repClass "LTR"; repEnd "5042"; repFamily "ERVL"; repLeft "4928"; repStart "-625"; chr19 rmsk exon 29734032 29735004 1908 - . gene_id "ERVLE_19q12b"; transcript_id "ERVLE_19q12b"; locus "ERVLE_19q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3433"; repClass "LTR"; repEnd "4911"; repFamily "ERVL"; repLeft "3916"; repStart "-756"; chr19 rmsk exon 29735344 29736001 1150 - . gene_id "ERVLE_19q12b"; transcript_id "ERVLE_19q12b"; locus "ERVLE_19q12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3433"; repClass "LTR"; repEnd "3314"; repFamily "ERVL"; repLeft "2641"; repStart "-2353"; ### ERV316A3_19q12e ### chr19 rmsk gene 30745577 30752624 . - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2627"; model_cov "3695"; model_pct "70.7"; chr19 rmsk exon 30745577 30745999 1198 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "2"; repStart "0"; chr19 rmsk exon 30746006 30746364 1088 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "4859"; repStart "-5"; chr19 rmsk exon 30747409 30748467 3044 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "3688"; repFamily "ERVL"; repLeft "2609"; repStart "-1538"; chr19 rmsk exon 30748774 30749218 1405 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "2533"; repFamily "ERVL"; repLeft "2089"; repStart "-2693"; chr19 rmsk exon 30749260 30750268 2426 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "1983"; repFamily "ERVL"; repLeft "967"; repStart "-3243"; chr19 rmsk exon 30751044 30751807 1583 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "927"; repFamily "ERVL"; repLeft "133"; repStart "-4299"; chr19 rmsk exon 30751923 30751966 696 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "408"; repStart "0"; chr19 rmsk exon 30752274 30752624 910 - . gene_id "ERV316A3_19q12e"; transcript_id "ERV316A3_19q12e"; locus "ERV316A3_19q12e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2627"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "14"; repStart "-44"; ### ERV316A3_19q12f ### chr19 rmsk gene 31898817 31900435 . - . gene_id "ERV316A3_19q12f"; transcript_id "ERV316A3_19q12f"; locus "ERV316A3_19q12f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2629"; model_cov "1602"; model_pct "30.7"; chr19 rmsk exon 31898817 31900435 4224 - . gene_id "ERV316A3_19q12f"; transcript_id "ERV316A3_19q12f"; locus "ERV316A3_19q12f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2629"; repClass "LTR"; repEnd "4377"; repFamily "ERVL"; repLeft "2775"; repStart "-849"; ### ERV316A3_19q13.11a ### chr19 rmsk gene 31953669 31957035 . + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2630"; model_cov "2450"; model_pct "46.9"; chr19 rmsk exon 31953669 31953763 387 + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2630"; repClass "LTR"; repEnd "2269"; repFamily "ERVL"; repLeft "-2957"; repStart "2173"; chr19 rmsk exon 31953762 31953872 640 + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2630"; repClass "LTR"; repEnd "2722"; repFamily "ERVL"; repLeft "-2504"; repStart "2612"; chr19 rmsk exon 31954170 31954368 640 + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2630"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2304"; repStart "2723"; chr19 rmsk exon 31954588 31956628 4692 + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2630"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3181"; chr19 rmsk exon 31956648 31957035 1359 + . gene_id "ERV316A3_19q13.11a"; transcript_id "ERV316A3_19q13.11a"; locus "ERV316A3_19q13.11a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2630"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-2"; repStart "55"; ### ERVLB4_19q13.11 ### chr19 rmsk gene 33184040 33184926 . - . gene_id "ERVLB4_19q13.11"; transcript_id "ERVLB4_19q13.11"; locus "ERVLB4_19q13.11"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1659"; model_cov "602"; model_pct "10.5"; chr19 rmsk exon 33184040 33184532 3070 - . gene_id "ERVLB4_19q13.11"; transcript_id "ERVLB4_19q13.11"; locus "ERVLB4_19q13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1659"; repClass "LTR"; repEnd "5090"; repFamily "ERVL"; repLeft "4599"; repStart "-624"; chr19 rmsk exon 33184819 33184926 3070 - . gene_id "ERVLB4_19q13.11"; transcript_id "ERVLB4_19q13.11"; locus "ERVLB4_19q13.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1659"; repClass "LTR"; repEnd "4598"; repFamily "ERVL"; repLeft "4487"; repStart "-1116"; ### ERV316A3_19q13.11b ### chr19 rmsk gene 33782953 33786722 . + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2632"; model_cov "2520"; model_pct "48.2"; chr19 rmsk exon 33782953 33783039 438 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "3017"; repFamily "ERVL"; repLeft "-2209"; repStart "2948"; chr19 rmsk exon 33783327 33783545 502 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "3226"; repFamily "ERVL"; repLeft "-2000"; repStart "2815"; chr19 rmsk exon 33783927 33784880 3965 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-757"; repStart "3481"; chr19 rmsk exon 33785393 33785667 3965 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "4755"; repFamily "ERVL"; repLeft "-471"; repStart "4470"; chr19 rmsk exon 33785668 33786037 1445 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "4213"; repFamily "ERVL"; repLeft "-1013"; repStart "3849"; chr19 rmsk exon 33786041 33786373 1447 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "5101"; repFamily "ERVL"; repLeft "-125"; repStart "4767"; chr19 rmsk exon 33786654 33786722 1447 + . gene_id "ERV316A3_19q13.11b"; transcript_id "ERV316A3_19q13.11b"; locus "ERV316A3_19q13.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2632"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "-55"; repStart "5102"; ### HERVH_19q13.11 ### chr19 rmsk gene 34514096 34517725 . + . gene_id "HERVH_19q13.11"; transcript_id "HERVH_19q13.11"; locus "HERVH_19q13.11"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1165"; model_cov "3322"; model_pct "43.1"; chr19 rmsk exon 34514096 34514494 2704 + . gene_id "HERVH_19q13.11"; transcript_id "HERVH_19q13.11"; locus "HERVH_19q13.11"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1165"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 34514497 34517397 14251 + . gene_id "HERVH_19q13.11"; transcript_id "HERVH_19q13.11"; locus "HERVH_19q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1165"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr19 rmsk exon 34517392 34517613 1282 + . gene_id "HERVH_19q13.11"; transcript_id "HERVH_19q13.11"; locus "HERVH_19q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1165"; repClass "LTR"; repEnd "3383"; repFamily "ERV1"; repLeft "-4330"; repStart "3140"; chr19 rmsk exon 34517632 34517725 546 + . gene_id "HERVH_19q13.11"; transcript_id "HERVH_19q13.11"; locus "HERVH_19q13.11"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1165"; repClass "LTR"; repEnd "4089"; repFamily "ERV1"; repLeft "-3624"; repStart "3996"; ### HERVS71_19q13.11a ### chr19 rmsk gene 34552716 34561339 . - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0048"; model_cov "7317"; model_pct "81.5"; chr19 rmsk exon 34552716 34553232 3423 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "60"; repStart "0"; chr19 rmsk exon 34553239 34555420 13742 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "6722"; repStart "-69"; chr19 rmsk exon 34555419 34555650 1234 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "5938"; repFamily "ERV1"; repLeft "5707"; repStart "-3040"; chr19 rmsk exon 34555647 34555851 1032 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "5486"; repFamily "ERV1"; repLeft "5282"; repStart "-3492"; chr19 rmsk exon 34555849 34559131 19759 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "4719"; repFamily "ERV1"; repLeft "1393"; repStart "-4259"; chr19 rmsk exon 34559520 34560828 6685 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "1373"; repFamily "ERV1"; repLeft "4"; repStart "-7605"; chr19 rmsk exon 34560831 34561339 3462 - . gene_id "HERVS71_19q13.11a"; transcript_id "HERVS71_19q13.11a"; locus "HERVS71_19q13.11a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0048"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "62"; repStart "0"; ### LTR25_19q13.11 ### chr19 rmsk gene 34621011 34625016 . - . gene_id "LTR25_19q13.11"; transcript_id "LTR25_19q13.11"; locus "LTR25_19q13.11"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0132"; model_cov "3851"; model_pct "53.6"; chr19 rmsk exon 34621011 34621822 3790 - . gene_id "LTR25_19q13.11"; transcript_id "LTR25_19q13.11"; locus "LTR25_19q13.11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0132"; repClass "LTR"; repEnd "4405"; repFamily "ERV1"; repLeft "3684"; repStart "-2783"; chr19 rmsk exon 34621859 34623243 7856 - . gene_id "LTR25_19q13.11"; transcript_id "LTR25_19q13.11"; locus "LTR25_19q13.11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0132"; repClass "LTR"; repEnd "3691"; repFamily "ERV1"; repLeft "2309"; repStart "-3497"; chr19 rmsk exon 34623281 34625016 9054 - . gene_id "LTR25_19q13.11"; transcript_id "LTR25_19q13.11"; locus "LTR25_19q13.11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0132"; repClass "LTR"; repEnd "1765"; repFamily "ERV1"; repLeft "17"; repStart "-5423"; ### HUERSP3_19q13.11 ### chr19 rmsk gene 34711792 34713511 . + . gene_id "HUERSP3_19q13.11"; transcript_id "HUERSP3_19q13.11"; locus "HUERSP3_19q13.11"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0198"; model_cov "1151"; model_pct "12.9"; chr19 rmsk exon 34711792 34712390 3845 + . gene_id "HUERSP3_19q13.11"; transcript_id "HUERSP3_19q13.11"; locus "HUERSP3_19q13.11"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0198"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 34712437 34712494 343 + . gene_id "HUERSP3_19q13.11"; transcript_id "HUERSP3_19q13.11"; locus "HUERSP3_19q13.11"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0198"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "-7322"; repStart "1539"; chr19 rmsk exon 34712488 34712828 1458 + . gene_id "HUERSP3_19q13.11"; transcript_id "HUERSP3_19q13.11"; locus "HUERSP3_19q13.11"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0198"; repClass "LTR"; repEnd "2077"; repFamily "ERV1"; repLeft "-6842"; repStart "1745"; chr19 rmsk exon 34712819 34713511 3215 + . gene_id "HUERSP3_19q13.11"; transcript_id "HUERSP3_19q13.11"; locus "HUERSP3_19q13.11"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0198"; repClass "LTR"; repEnd "1479"; repFamily "ERV1"; repLeft "-7440"; repStart "718"; ### HERVS71_19q13.11b ### chr19 rmsk gene 34721933 34727787 . + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0049"; model_cov "4813"; model_pct "53.6"; chr19 rmsk exon 34721933 34722488 3933 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 34722491 34722849 2717 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-8497"; repStart "4"; chr19 rmsk exon 34722924 34723282 2717 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "849"; repFamily "ERV1"; repLeft "-8129"; repStart "482"; chr19 rmsk exon 34723306 34725034 9265 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "2685"; repFamily "ERV1"; repLeft "-6293"; repStart "927"; chr19 rmsk exon 34725029 34727233 13400 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "6698"; chr19 rmsk exon 34727234 34727787 3849 + . gene_id "HERVS71_19q13.11b"; transcript_id "HERVS71_19q13.11b"; locus "HERVS71_19q13.11b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0049"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL74_19q13.11a ### chr19 rmsk gene 34750581 34752268 . + . gene_id "HERVL74_19q13.11a"; transcript_id "HERVL74_19q13.11a"; locus "HERVL74_19q13.11a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0115"; model_cov "1621"; model_pct "28.5"; chr19 rmsk exon 34750581 34751348 3938 + . gene_id "HERVL74_19q13.11a"; transcript_id "HERVL74_19q13.11a"; locus "HERVL74_19q13.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0115"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3657"; repStart "1224"; chr19 rmsk exon 34751468 34751620 705 + . gene_id "HERVL74_19q13.11a"; transcript_id "HERVL74_19q13.11a"; locus "HERVL74_19q13.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0115"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "-1612"; repStart "3913"; chr19 rmsk exon 34751616 34752268 2319 + . gene_id "HERVL74_19q13.11a"; transcript_id "HERVL74_19q13.11a"; locus "HERVL74_19q13.11a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0115"; repClass "LTR"; repEnd "5250"; repFamily "ERVL"; repLeft "-435"; repStart "4593"; ### HERVL74_19q13.11b ### chr19 rmsk gene 34945839 34946826 . - . gene_id "HERVL74_19q13.11b"; transcript_id "HERVL74_19q13.11b"; locus "HERVL74_19q13.11b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0116"; model_cov "1010"; model_pct "17.8"; chr19 rmsk exon 34945839 34946826 5345 - . gene_id "HERVL74_19q13.11b"; transcript_id "HERVL74_19q13.11b"; locus "HERVL74_19q13.11b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0116"; repClass "LTR"; repEnd "3231"; repFamily "ERVL"; repLeft "2221"; repStart "-2454"; ### ERVLE_19q13.12a ### chr19 rmsk gene 35179191 35182123 . + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3435"; model_cov "1343"; model_pct "23.7"; chr19 rmsk exon 35179191 35179552 2206 + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3435"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-272"; repStart "1"; chr19 rmsk exon 35179864 35180103 2206 + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3435"; repClass "LTR"; repEnd "603"; repFamily "ERVL"; repLeft "-60"; repStart "392"; chr19 rmsk exon 35180160 35180210 4651 + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3435"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "-5617"; repStart "5"; chr19 rmsk exon 35180521 35181581 4651 + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3435"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4517"; repStart "51"; chr19 rmsk exon 35181919 35182123 952 + . gene_id "ERVLE_19q13.12a"; transcript_id "ERVLE_19q13.12a"; locus "ERVLE_19q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3435"; repClass "LTR"; repEnd "1366"; repFamily "ERVL"; repLeft "-4301"; repStart "1167"; ### ERVLE_19q13.12b ### chr19 rmsk gene 35196745 35199045 . + . gene_id "ERVLE_19q13.12b"; transcript_id "ERVLE_19q13.12b"; locus "ERVLE_19q13.12b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3437"; model_cov "747"; model_pct "13.2"; chr19 rmsk exon 35196745 35196781 3679 + . gene_id "ERVLE_19q13.12b"; transcript_id "ERVLE_19q13.12b"; locus "ERVLE_19q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3437"; repClass "LTR"; repEnd "4566"; repFamily "ERVL"; repLeft "-1101"; repStart "4530"; chr19 rmsk exon 35197446 35198141 3679 + . gene_id "ERVLE_19q13.12b"; transcript_id "ERVLE_19q13.12b"; locus "ERVLE_19q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3437"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "-389"; repStart "4567"; chr19 rmsk exon 35198332 35198426 1416 + . gene_id "ERVLE_19q13.12b"; transcript_id "ERVLE_19q13.12b"; locus "ERVLE_19q13.12b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3437"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "-272"; repStart "305"; chr19 rmsk exon 35198739 35199045 1416 + . gene_id "ERVLE_19q13.12b"; transcript_id "ERVLE_19q13.12b"; locus "ERVLE_19q13.12b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3437"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "392"; ### HML2_19q13.12a ### chr19 rmsk gene 35572527 35576532 . - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0113"; model_cov "3681"; model_pct "48.8"; chr19 rmsk exon 35572527 35575603 24890 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "4362"; repStart "-89"; chr19 rmsk exon 35575937 35576532 4594 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "2957"; repFamily "ERVK"; repLeft "2361"; repStart "-4579"; ### HERVH_19q13.12a ### chr19 rmsk gene 36155475 36161023 . - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1166"; model_cov "4908"; model_pct "63.6"; chr19 rmsk exon 36155475 36155907 2767 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 36155908 36156279 2302 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr19 rmsk exon 36156278 36156494 1193 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 36156496 36157114 2658 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19 rmsk exon 36157117 36157619 3170 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr19 rmsk exon 36157610 36157757 776 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19 rmsk exon 36157752 36160577 14455 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 36160592 36161023 2718 - . gene_id "HERVH_19q13.12a"; transcript_id "HERVH_19q13.12a"; locus "HERVH_19q13.12a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1166"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_19q13.12c ### chr19 rmsk gene 36161029 36168089 . - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3438"; model_cov "2043"; model_pct "36.1"; chr19 rmsk exon 36161029 36161508 4724 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "4914"; repFamily "ERVL"; repLeft "4427"; repStart "-753"; chr19 rmsk exon 36161816 36162298 4724 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "4426"; repFamily "ERVL"; repLeft "3959"; repStart "-1241"; chr19 rmsk exon 36163556 36163807 4724 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "3948"; repFamily "ERVL"; repLeft "3703"; repStart "-1719"; chr19 rmsk exon 36163986 36164098 474 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "3687"; repFamily "ERVL"; repLeft "3578"; repStart "-1980"; chr19 rmsk exon 36164389 36164422 474 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "3577"; repFamily "ERVL"; repLeft "3547"; repStart "-2090"; chr19 rmsk exon 36165167 36165382 758 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "3055"; repFamily "ERVL"; repLeft "2828"; repStart "-2612"; chr19 rmsk exon 36167611 36168089 1803 - . gene_id "ERVLE_19q13.12c"; transcript_id "ERVLE_19q13.12c"; locus "ERVLE_19q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3438"; repClass "LTR"; repEnd "2813"; repFamily "ERVL"; repLeft "2335"; repStart "-2854"; ### HERVH_19q13.12b ### chr19 rmsk gene 36259508 36265220 . - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1167"; model_cov "4903"; model_pct "63.6"; chr19 rmsk exon 36259508 36259932 1863 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "-6"; repStart "-6"; chr19 rmsk exon 36259933 36260306 2452 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr19 rmsk exon 36260305 36260521 1302 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 36260523 36261183 4058 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19 rmsk exon 36261186 36261681 3200 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3495"; repStart "-3720"; chr19 rmsk exon 36261678 36261824 775 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chr19 rmsk exon 36261819 36264790 18940 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 36264793 36265220 3080 - . gene_id "HERVH_19q13.12b"; transcript_id "HERVH_19q13.12b"; locus "HERVH_19q13.12b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1167"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVS71_19q13.12a ### chr19 rmsk gene 36324873 36331043 . - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0050"; model_cov "5191"; model_pct "57.8"; chr19 rmsk exon 36324873 36325429 4556 - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0050"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr19 rmsk exon 36325430 36325565 856 - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0050"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8774"; repStart "-69"; chr19 rmsk exon 36325542 36327350 9661 - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0050"; repClass "LTR"; repEnd "7072"; repFamily "ERV1"; repLeft "5189"; repStart "-1906"; chr19 rmsk exon 36327347 36330482 20354 - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0050"; repClass "LTR"; repEnd "3177"; repFamily "ERV1"; repLeft "4"; repStart "-5801"; chr19 rmsk exon 36330485 36331043 4597 - . gene_id "HERVS71_19q13.12a"; transcript_id "HERVS71_19q13.12a"; locus "HERVS71_19q13.12a"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0050"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_19q13.12 ### chr19 rmsk gene 36669468 36673749 . + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1660"; model_cov "3094"; model_pct "54.1"; chr19 rmsk exon 36669468 36669509 278 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "1942"; repFamily "ERVL"; repLeft "-3772"; repStart "1900"; chr19 rmsk exon 36670072 36670819 14880 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "2707"; repFamily "ERVL"; repLeft "-3007"; repStart "1940"; chr19 rmsk exon 36671131 36672807 14880 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "4435"; repFamily "ERVL"; repLeft "-1279"; repStart "2708"; chr19 rmsk exon 36672778 36673305 2935 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5156"; chr19 rmsk exon 36673306 36673677 2184 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chr19 rmsk exon 36673718 36673749 2184 + . gene_id "ERVLB4_19q13.12"; transcript_id "ERVLB4_19q13.12"; locus "ERVLB4_19q13.12"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1660"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "-8"; repStart "375"; ### ERVLE_19q13.12d ### chr19 rmsk gene 36863319 36863947 . - . gene_id "ERVLE_19q13.12d"; transcript_id "ERVLE_19q13.12d"; locus "ERVLE_19q13.12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3440"; model_cov "655"; model_pct "11.6"; chr19 rmsk exon 36863319 36863947 1056 - . gene_id "ERVLE_19q13.12d"; transcript_id "ERVLE_19q13.12d"; locus "ERVLE_19q13.12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3440"; repClass "LTR"; repEnd "759"; repFamily "ERVL"; repLeft "104"; repStart "-4908"; ### HML2_19q13.12b ### chr19 rmsk gene 37106647 37116164 . - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0114"; model_cov "7454"; model_pct "98.9"; chr19 rmsk exon 37106647 37107600 5785 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "5"; repStart "0"; chr19 rmsk exon 37107697 37114371 40845 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "744"; repStart "-95"; chr19 rmsk exon 37114452 37115196 5138 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr19 rmsk exon 37115197 37116164 6571 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVS71_19q13.12b ### chr19 rmsk gene 37554746 37558628 . - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0051"; model_cov "3385"; model_pct "37.7"; chr19 rmsk exon 37554746 37555298 4588 - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0051"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 37555299 37555613 2482 - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0051"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "8594"; repStart "-69"; chr19 rmsk exon 37555611 37557320 13132 - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0051"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "6070"; repStart "-1192"; chr19 rmsk exon 37557323 37558153 5504 - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0051"; repClass "LTR"; repEnd "5666"; repFamily "ERV1"; repLeft "4803"; repStart "-3312"; chr19 rmsk exon 37558136 37558628 3580 - . gene_id "HERVS71_19q13.12b"; transcript_id "HERVS71_19q13.12b"; locus "HERVS71_19q13.12b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0051"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "2745"; repStart "-5742"; ### HERVL40_19q13.2 ### chr19 rmsk gene 38294344 38298856 . + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0428"; model_cov "1733"; model_pct "31.3"; chr19 rmsk exon 38294344 38294544 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "3974"; repFamily "ERVL"; repLeft "-1556"; repStart "3776"; chr19 rmsk exon 38294634 38294811 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "4153"; repFamily "ERVL"; repLeft "-1377"; repStart "3975"; chr19 rmsk exon 38295714 38296320 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "-749"; repStart "4154"; chr19 rmsk exon 38296640 38296926 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "5042"; repFamily "ERVL"; repLeft "-488"; repStart "4782"; chr19 rmsk exon 38297102 38297268 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "-311"; repStart "5043"; chr19 rmsk exon 38297908 38298149 3431 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "5514"; repFamily "ERVL"; repLeft "-16"; repStart "5220"; chr19 rmsk exon 38298151 38298220 918 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "93"; repFamily "ERVL"; repLeft "-372"; repStart "22"; chr19 rmsk exon 38298532 38298856 918 + . gene_id "HERVL40_19q13.2"; transcript_id "HERVL40_19q13.2"; locus "HERVL40_19q13.2"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0428"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "0"; repStart "94"; ### HERVH_19q13.2a ### chr19 rmsk gene 38750366 38755295 . + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1168"; model_cov "4470"; model_pct "58.0"; chr19 rmsk exon 38750366 38750475 418 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "-304"; repStart "15"; chr19 rmsk exon 38750493 38753013 15638 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "437"; chr19 rmsk exon 38753008 38753155 825 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 38753146 38753648 3220 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr19 rmsk exon 38753651 38754296 2602 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr19 rmsk exon 38754298 38754514 1211 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 38754515 38754888 2246 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr19 rmsk exon 38754889 38755295 2713 + . gene_id "HERVH_19q13.2a"; transcript_id "HERVH_19q13.2a"; locus "HERVH_19q13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1168"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_19q13.2 ### chr19 rmsk gene 38935164 38941835 . - . gene_id "HML3_19q13.2"; transcript_id "HML3_19q13.2"; locus "HML3_19q13.2"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0224"; model_cov "5667"; model_pct "94.1"; chr19 rmsk exon 38935164 38935673 4169 - . gene_id "HML3_19q13.2"; transcript_id "HML3_19q13.2"; locus "HML3_19q13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0224"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 38935674 38937299 12541 - . gene_id "HML3_19q13.2"; transcript_id "HML3_19q13.2"; locus "HML3_19q13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0224"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4399"; repStart "0"; chr19 rmsk exon 38937290 38941326 31954 - . gene_id "HML3_19q13.2"; transcript_id "HML3_19q13.2"; locus "HML3_19q13.2"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0224"; repClass "LTR"; repEnd "4046"; repFamily "ERVK"; repLeft "1"; repStart "-1975"; chr19 rmsk exon 38941327 38941835 4264 - . gene_id "HML3_19q13.2"; transcript_id "HML3_19q13.2"; locus "HML3_19q13.2"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0224"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER101_19q13.2a ### chr19 rmsk gene 39041731 39044492 . + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0389"; model_cov "1490"; model_pct "22.4"; chr19 rmsk exon 39041731 39041920 997 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "4284"; repFamily "ERV1"; repLeft "-2355"; repStart "4120"; chr19 rmsk exon 39042222 39042593 2173 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "4270"; chr19 rmsk exon 39042895 39043217 1824 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "5900"; repFamily "ERV1"; repLeft "-739"; repStart "5545"; chr19 rmsk exon 39043218 39043496 1262 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "6289"; repFamily "ERV1"; repLeft "-350"; repStart "6005"; chr19 rmsk exon 39043784 39043964 1262 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "6465"; repFamily "ERV1"; repLeft "-174"; repStart "6290"; chr19 rmsk exon 39044330 39044492 661 + . gene_id "MER101_19q13.2a"; transcript_id "MER101_19q13.2a"; locus "MER101_19q13.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0389"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6473"; ### HUERSP3_19q13.2a ### chr19 rmsk gene 39626845 39630541 . - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0199"; model_cov "2131"; model_pct "23.9"; chr19 rmsk exon 39626845 39627437 2719 - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0199"; repClass "LTR"; repEnd "6838"; repFamily "ERV1"; repLeft "6218"; repStart "-2081"; chr19 rmsk exon 39627429 39627820 2566 - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0199"; repClass "LTR"; repEnd "5320"; repFamily "ERV1"; repLeft "4900"; repStart "-3599"; chr19 rmsk exon 39627821 39627964 883 - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0199"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chr19 rmsk exon 39627958 39628051 472 - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0199"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "3187"; repStart "-5635"; chr19 rmsk exon 39629693 39630541 4972 - . gene_id "HUERSP3_19q13.2a"; transcript_id "HUERSP3_19q13.2a"; locus "HUERSP3_19q13.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0199"; repClass "LTR"; repEnd "3195"; repFamily "ERV1"; repLeft "2344"; repStart "-5724"; ### HUERSP3_19q13.2b ### chr19 rmsk gene 39671694 39675061 . + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0201"; model_cov "2944"; model_pct "33.0"; chr19 rmsk exon 39671694 39671863 975 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "665"; repFamily "ERV1"; repLeft "-1"; repStart "486"; chr19 rmsk exon 39672138 39673008 4569 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "1652"; repFamily "ERV1"; repLeft "-7267"; repStart "743"; chr19 rmsk exon 39673012 39673925 5237 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "2361"; chr19 rmsk exon 39673919 39674062 847 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4539"; chr19 rmsk exon 39674107 39674452 2380 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "5320"; repFamily "ERV1"; repLeft "-3599"; repStart "4974"; chr19 rmsk exon 39674441 39675061 3204 + . gene_id "HUERSP3_19q13.2b"; transcript_id "HUERSP3_19q13.2b"; locus "HUERSP3_19q13.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0201"; repClass "LTR"; repEnd "6838"; repFamily "ERV1"; repLeft "-2081"; repStart "6215"; ### PRIMA41_19q13.2a ### chr19 rmsk gene 39943749 39946303 . - . gene_id "PRIMA41_19q13.2a"; transcript_id "PRIMA41_19q13.2a"; locus "PRIMA41_19q13.2a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0145"; model_cov "1114"; model_pct "14.4"; chr19 rmsk exon 39943749 39944277 723 - . gene_id "PRIMA41_19q13.2a"; transcript_id "PRIMA41_19q13.2a"; locus "PRIMA41_19q13.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0145"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "7211"; repStart "-23"; chr19 rmsk exon 39945059 39945450 809 - . gene_id "PRIMA41_19q13.2a"; transcript_id "PRIMA41_19q13.2a"; locus "PRIMA41_19q13.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0145"; repClass "LTR"; repEnd "5909"; repFamily "ERV1"; repLeft "5521"; repStart "-1847"; chr19 rmsk exon 39946107 39946303 379 - . gene_id "PRIMA41_19q13.2a"; transcript_id "PRIMA41_19q13.2a"; locus "PRIMA41_19q13.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0145"; repClass "LTR"; repEnd "4841"; repFamily "ERV1"; repLeft "4637"; repStart "-2915"; ### PRIMA41_19q13.2b ### chr19 rmsk gene 39947753 39951779 . - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0146"; model_cov "3642"; model_pct "47.0"; chr19 rmsk exon 39947753 39947858 593 - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0146"; repClass "LTR"; repEnd "6023"; repFamily "ERV1"; repLeft "5919"; repStart "-1733"; chr19 rmsk exon 39948217 39948453 593 - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0146"; repClass "LTR"; repEnd "4862"; repFamily "ERV1"; repLeft "4465"; repStart "-2894"; chr19 rmsk exon 39948782 39949245 801 - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0146"; repClass "LTR"; repEnd "4611"; repFamily "ERV1"; repLeft "4153"; repStart "-3145"; chr19 rmsk exon 39949248 39951171 1129 - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0146"; repClass "LTR"; repEnd "3628"; repFamily "ERV1"; repLeft "1206"; repStart "-4128"; chr19 rmsk exon 39951515 39951779 436 - . gene_id "PRIMA41_19q13.2b"; transcript_id "PRIMA41_19q13.2b"; locus "PRIMA41_19q13.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0146"; repClass "LTR"; repEnd "2464"; repFamily "ERV1"; repLeft "2203"; repStart "-5292"; ### MER101_19q13.2b ### chr19 rmsk gene 40104327 40107181 . - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0390"; model_cov "1378"; model_pct "20.8"; chr19 rmsk exon 40104327 40104440 736 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0390"; repClass "LTR"; repEnd "245"; repFamily "ERV1"; repLeft "132"; repStart "-200"; chr19 rmsk exon 40104672 40105290 2623 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0390"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6006"; repStart "0"; chr19 rmsk exon 40105618 40105662 257 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0390"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "5834"; repStart "-768"; chr19 rmsk exon 40106008 40106038 257 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0390"; repClass "LTR"; repEnd "5833"; repFamily "ERV1"; repLeft "5803"; repStart "-806"; chr19 rmsk exon 40106053 40106433 3203 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0390"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "4439"; repStart "-2023"; chr19 rmsk exon 40106653 40107181 3203 - . gene_id "MER101_19q13.2b"; transcript_id "MER101_19q13.2b"; locus "MER101_19q13.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0390"; repClass "LTR"; repEnd "4438"; repFamily "ERV1"; repLeft "3937"; repStart "-2201"; ### MER101_19q13.2c ### chr19 rmsk gene 40110255 40116410 . - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0392"; model_cov "2614"; model_pct "39.4"; chr19 rmsk exon 40110255 40110382 492 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "3950"; repFamily "ERV1"; repLeft "3847"; repStart "-2689"; chr19 rmsk exon 40110401 40111093 3547 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "3440"; repFamily "ERV1"; repLeft "2760"; repStart "-3199"; chr19 rmsk exon 40111221 40111428 2059 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2766"; repFamily "ERV1"; repLeft "2540"; repStart "-3873"; chr19 rmsk exon 40111745 40111759 2280 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2539"; repFamily "ERV1"; repLeft "2531"; repStart "-4100"; chr19 rmsk exon 40112112 40112169 2280 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2530"; repFamily "ERV1"; repLeft "2458"; repStart "-4109"; chr19 rmsk exon 40112473 40112738 2280 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2457"; repFamily "ERV1"; repLeft "1986"; repStart "-4182"; chr19 rmsk exon 40112729 40112849 2050 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "3003"; repFamily "ERV1"; repLeft "2885"; repStart "-3636"; chr19 rmsk exon 40113151 40113550 2050 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2884"; repFamily "ERV1"; repLeft "2473"; repStart "-3755"; chr19 rmsk exon 40114722 40114798 851 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2484"; repFamily "ERV1"; repLeft "2433"; repStart "-4155"; chr19 rmsk exon 40115099 40115320 851 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2193"; repStart "-4207"; chr19 rmsk exon 40115334 40115582 498 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0392"; repClass "LTR"; repEnd "2118"; repFamily "ERV1"; repLeft "1883"; repStart "-4521"; chr19 rmsk exon 40116020 40116410 2600 - . gene_id "MER101_19q13.2c"; transcript_id "MER101_19q13.2c"; locus "MER101_19q13.2c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0392"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "45"; repStart "0"; ### MER34B_19q13.2 ### chr19 rmsk gene 40299587 40304817 . + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0258"; model_cov "1617"; model_pct "30.2"; chr19 rmsk exon 40299587 40299744 1604 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "3306"; repFamily "ERV1"; repLeft "-2050"; repStart "3153"; chr19 rmsk exon 40300035 40300184 1604 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "3441"; repFamily "ERV1"; repLeft "-1915"; repStart "3307"; chr19 rmsk exon 40300477 40300869 1604 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "3832"; repFamily "ERV1"; repLeft "-1524"; repStart "3442"; chr19 rmsk exon 40301174 40301242 1604 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "3902"; repFamily "ERV1"; repLeft "-1454"; repStart "3833"; chr19 rmsk exon 40302189 40302271 2899 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "4479"; repFamily "ERV1"; repLeft "-877"; repStart "4409"; chr19 rmsk exon 40302590 40302971 2899 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "4858"; repFamily "ERV1"; repLeft "-498"; repStart "4480"; chr19 rmsk exon 40303831 40304148 2899 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "5181"; repFamily "ERV1"; repLeft "-175"; repStart "4859"; chr19 rmsk exon 40304130 40304231 437 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "5356"; repFamily "ERV1"; repLeft "0"; repStart "5255"; chr19 rmsk exon 40304244 40304817 2006 + . gene_id "MER34B_19q13.2"; transcript_id "MER34B_19q13.2"; locus "MER34B_19q13.2"; repName "MER34C2"; geneRegion "ltr"; locid "MER34B-int_0258"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "0"; repStart "-20"; ### ERVLE_19q13.2a ### chr19 rmsk gene 40859617 40861431 . + . gene_id "ERVLE_19q13.2a"; transcript_id "ERVLE_19q13.2a"; locus "ERVLE_19q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3443"; model_cov "917"; model_pct "16.2"; chr19 rmsk exon 40859617 40859694 1402 + . gene_id "ERVLE_19q13.2a"; transcript_id "ERVLE_19q13.2a"; locus "ERVLE_19q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3443"; repClass "LTR"; repEnd "363"; repFamily "ERVL"; repLeft "-5304"; repStart "292"; chr19 rmsk exon 40859992 40860344 1402 + . gene_id "ERVLE_19q13.2a"; transcript_id "ERVLE_19q13.2a"; locus "ERVLE_19q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3443"; repClass "LTR"; repEnd "743"; repFamily "ERVL"; repLeft "-4924"; repStart "364"; chr19 rmsk exon 40860648 40860822 1402 + . gene_id "ERVLE_19q13.2a"; transcript_id "ERVLE_19q13.2a"; locus "ERVLE_19q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3443"; repClass "LTR"; repEnd "916"; repFamily "ERVL"; repLeft "-4751"; repStart "744"; chr19 rmsk exon 40861135 40861431 1402 + . gene_id "ERVLE_19q13.2a"; transcript_id "ERVLE_19q13.2a"; locus "ERVLE_19q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3443"; repClass "LTR"; repEnd "1212"; repFamily "ERVL"; repLeft "-4455"; repStart "917"; ### HERVK14C_19q13.2 ### chr19 rmsk gene 40954173 40959190 . + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0026"; model_cov "4021"; model_pct "54.1"; chr19 rmsk exon 40954173 40954753 4491 + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0026"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 40954754 40957267 20069 + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0026"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "-4890"; repStart "1"; chr19 rmsk exon 40957262 40957771 4449 + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0026"; repClass "LTR"; repEnd "5818"; repFamily "ERVK"; repLeft "-1616"; repStart "5306"; chr19 rmsk exon 40957768 40958718 7990 + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0026"; repClass "LTR"; repEnd "7430"; repFamily "ERVK"; repLeft "-4"; repStart "6464"; chr19 rmsk exon 40958724 40959190 3724 + . gene_id "HERVK14C_19q13.2"; transcript_id "HERVK14C_19q13.2"; locus "HERVK14C_19q13.2"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0026"; repClass "LTR"; repEnd "480"; repFamily "ERVK"; repLeft "-107"; repStart "1"; ### HERVW_19q13.2 ### chr19 rmsk gene 40986243 40988149 . - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0293"; model_cov "1135"; model_pct "13.2"; chr19 rmsk exon 40986243 40987025 5338 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 40987026 40987317 2255 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr19 rmsk exon 40987308 40987346 293 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr19 rmsk exon 40987340 40987952 4940 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5405"; repStart "-2607"; chr19 rmsk exon 40987932 40988123 1512 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "3562"; repStart "-4872"; chr19 rmsk exon 40988124 40988149 243 - . gene_id "HERVW_19q13.2"; transcript_id "HERVW_19q13.2"; locus "HERVW_19q13.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0293"; repClass "LTR"; repEnd "26"; repFamily "ERV1"; repLeft "1"; repStart "-754"; ### ERV316A3_19q13.2 ### chr19 rmsk gene 41493877 41495898 . - . gene_id "ERV316A3_19q13.2"; transcript_id "ERV316A3_19q13.2"; locus "ERV316A3_19q13.2"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2635"; model_cov "830"; model_pct "15.9"; chr19 rmsk exon 41493877 41493894 263 - . gene_id "ERV316A3_19q13.2"; transcript_id "ERV316A3_19q13.2"; locus "ERV316A3_19q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2635"; repClass "LTR"; repEnd "4622"; repFamily "ERVL"; repLeft "4605"; repStart "-604"; chr19 rmsk exon 41494205 41494323 263 - . gene_id "ERV316A3_19q13.2"; transcript_id "ERV316A3_19q13.2"; locus "ERV316A3_19q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2635"; repClass "LTR"; repEnd "4604"; repFamily "ERVL"; repLeft "4489"; repStart "-622"; chr19 rmsk exon 41495001 41495420 402 - . gene_id "ERV316A3_19q13.2"; transcript_id "ERV316A3_19q13.2"; locus "ERV316A3_19q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2635"; repClass "LTR"; repEnd "2556"; repFamily "ERVL"; repLeft "2144"; repStart "-2670"; chr19 rmsk exon 41495603 41495898 547 - . gene_id "ERV316A3_19q13.2"; transcript_id "ERV316A3_19q13.2"; locus "ERV316A3_19q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2635"; repClass "LTR"; repEnd "1999"; repFamily "ERVL"; repLeft "1713"; repStart "-3227"; ### HUERSP1_19q13.2a ### chr19 rmsk gene 41532323 41532993 . - . gene_id "HUERSP1_19q13.2a"; transcript_id "HUERSP1_19q13.2a"; locus "HUERSP1_19q13.2a"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0195"; model_cov "645"; model_pct "10.3"; chr19 rmsk exon 41532323 41532993 1086 - . gene_id "HUERSP1_19q13.2a"; transcript_id "HUERSP1_19q13.2a"; locus "HUERSP1_19q13.2a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0195"; repClass "LTR"; repEnd "3723"; repFamily "ERV1"; repLeft "3078"; repStart "-2540"; ### HUERSP2_19q13.2 ### chr19 rmsk gene 41536367 41540526 . + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0118"; model_cov "2565"; model_pct "83.1"; chr19 rmsk exon 41536367 41537235 3578 + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0118"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 41537236 41537360 457 + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0118"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "-2968"; repStart "1"; chr19 rmsk exon 41537355 41539698 14635 + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0118"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "-544"; repStart "230"; chr19 rmsk exon 41539689 41539822 970 + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0118"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2956"; chr19 rmsk exon 41539835 41540526 4403 + . gene_id "HUERSP2_19q13.2"; transcript_id "HUERSP2_19q13.2"; locus "HUERSP2_19q13.2"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0118"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "-131"; repStart "8"; ### PABLA_19q13.2 ### chr19 rmsk gene 41551919 41554973 . - . gene_id "PABLA_19q13.2"; transcript_id "PABLA_19q13.2"; locus "PABLA_19q13.2"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0143"; model_cov "2088"; model_pct "41.6"; chr19 rmsk exon 41551919 41552582 4696 - . gene_id "PABLA_19q13.2"; transcript_id "PABLA_19q13.2"; locus "PABLA_19q13.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0143"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 41552583 41553122 15101 - . gene_id "PABLA_19q13.2"; transcript_id "PABLA_19q13.2"; locus "PABLA_19q13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0143"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4489"; repStart "0"; chr19 rmsk exon 41553404 41554973 15101 - . gene_id "PABLA_19q13.2"; transcript_id "PABLA_19q13.2"; locus "PABLA_19q13.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0143"; repClass "LTR"; repEnd "4488"; repFamily "ERV1"; repLeft "2926"; repStart "-527"; ### HERVL74_19q13.2 ### chr19 rmsk gene 41611030 41611758 . - . gene_id "HERVL74_19q13.2"; transcript_id "HERVL74_19q13.2"; locus "HERVL74_19q13.2"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0117"; model_cov "742"; model_pct "13.1"; chr19 rmsk exon 41611030 41611092 294 - . gene_id "HERVL74_19q13.2"; transcript_id "HERVL74_19q13.2"; locus "HERVL74_19q13.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0117"; repClass "LTR"; repEnd "3048"; repFamily "ERVL"; repLeft "2984"; repStart "-2637"; chr19 rmsk exon 41611104 41611758 3339 - . gene_id "HERVL74_19q13.2"; transcript_id "HERVL74_19q13.2"; locus "HERVL74_19q13.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0117"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "1030"; repStart "-3977"; ### HUERSP1_19q13.2b ### chr19 rmsk gene 41650534 41652478 . - . gene_id "HUERSP1_19q13.2b"; transcript_id "HUERSP1_19q13.2b"; locus "HUERSP1_19q13.2b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0196"; model_cov "1182"; model_pct "18.9"; chr19 rmsk exon 41650534 41650837 775 - . gene_id "HUERSP1_19q13.2b"; transcript_id "HUERSP1_19q13.2b"; locus "HUERSP1_19q13.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0196"; repClass "LTR"; repEnd "6258"; repFamily "ERV1"; repLeft "5946"; repStart "-5"; chr19 rmsk exon 41651613 41651900 1373 - . gene_id "HUERSP1_19q13.2b"; transcript_id "HUERSP1_19q13.2b"; locus "HUERSP1_19q13.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0196"; repClass "LTR"; repEnd "1536"; repFamily "ERV1"; repLeft "1235"; repStart "-4727"; chr19 rmsk exon 41651919 41652478 2007 - . gene_id "HUERSP1_19q13.2b"; transcript_id "HUERSP1_19q13.2b"; locus "HUERSP1_19q13.2b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0196"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "629"; repStart "-5065"; ### ERVLE_19q13.2b ### chr19 rmsk gene 42029596 42031584 . - . gene_id "ERVLE_19q13.2b"; transcript_id "ERVLE_19q13.2b"; locus "ERVLE_19q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3446"; model_cov "1045"; model_pct "18.4"; chr19 rmsk exon 42029596 42029880 1036 - . gene_id "ERVLE_19q13.2b"; transcript_id "ERVLE_19q13.2b"; locus "ERVLE_19q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3446"; repClass "LTR"; repEnd "3178"; repFamily "ERVL"; repLeft "2902"; repStart "-2489"; chr19 rmsk exon 42030857 42031584 3018 - . gene_id "ERVLE_19q13.2b"; transcript_id "ERVLE_19q13.2b"; locus "ERVLE_19q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3446"; repClass "LTR"; repEnd "2703"; repFamily "ERVL"; repLeft "1934"; repStart "-2964"; ### HERVH_19q13.2b ### chr19 rmsk gene 42446956 42450166 . - . gene_id "HERVH_19q13.2b"; transcript_id "HERVH_19q13.2b"; locus "HERVH_19q13.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1169"; model_cov "2775"; model_pct "36.0"; chr19 rmsk exon 42446956 42447361 2072 - . gene_id "HERVH_19q13.2b"; transcript_id "HERVH_19q13.2b"; locus "HERVH_19q13.2b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1169"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 42447362 42450166 20003 - . gene_id "HERVH_19q13.2b"; transcript_id "HERVH_19q13.2b"; locus "HERVH_19q13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1169"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "4938"; repStart "0"; ### MER41_19q13.2a ### chr19 rmsk gene 42487086 42492400 . - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0517"; model_cov "3597"; model_pct "60.5"; chr19 rmsk exon 42487086 42487711 4152 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0517"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 42487712 42488626 18796 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5031"; repStart "0"; chr19 rmsk exon 42488933 42490020 18796 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "5030"; repFamily "ERV1"; repLeft "3905"; repStart "-916"; chr19 rmsk exon 42490324 42490556 18796 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "3904"; repFamily "ERV1"; repLeft "3680"; repStart "-2042"; chr19 rmsk exon 42490991 42492014 18796 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "3679"; repFamily "ERV1"; repLeft "2721"; repStart "-2267"; chr19 rmsk exon 42492002 42492247 1040 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "-131"; repFamily "ERV1"; repLeft "-360"; repStart "-6077"; chr19 rmsk exon 42492257 42492400 4758 - . gene_id "MER41_19q13.2a"; transcript_id "MER41_19q13.2a"; locus "MER41_19q13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0517"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "2374"; repStart "-3426"; ### MER41_19q13.2b ### chr19 rmsk gene 42492710 42494666 . - . gene_id "MER41_19q13.2b"; transcript_id "MER41_19q13.2b"; locus "MER41_19q13.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0518"; model_cov "966"; model_pct "16.2"; chr19 rmsk exon 42492710 42492897 9366 - . gene_id "MER41_19q13.2b"; transcript_id "MER41_19q13.2b"; locus "MER41_19q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0518"; repClass "LTR"; repEnd "2730"; repFamily "ERV1"; repLeft "2605"; repStart "-3216"; chr19 rmsk exon 42493194 42493446 9366 - . gene_id "MER41_19q13.2b"; transcript_id "MER41_19q13.2b"; locus "MER41_19q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0518"; repClass "LTR"; repEnd "2604"; repFamily "ERV1"; repLeft "2364"; repStart "-3342"; chr19 rmsk exon 42493745 42493842 9366 - . gene_id "MER41_19q13.2b"; transcript_id "MER41_19q13.2b"; locus "MER41_19q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0518"; repClass "LTR"; repEnd "2363"; repFamily "ERV1"; repLeft "2273"; repStart "-3583"; chr19 rmsk exon 42494135 42494666 9366 - . gene_id "MER41_19q13.2b"; transcript_id "MER41_19q13.2b"; locus "MER41_19q13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0518"; repClass "LTR"; repEnd "2272"; repFamily "ERV1"; repLeft "1761"; repStart "-3674"; ### MER41_19q13.2c ### chr19 rmsk gene 42494709 42496959 . - . gene_id "MER41_19q13.2c"; transcript_id "MER41_19q13.2c"; locus "MER41_19q13.2c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0519"; model_cov "1325"; model_pct "22.3"; chr19 rmsk exon 42494709 42495413 9366 - . gene_id "MER41_19q13.2c"; transcript_id "MER41_19q13.2c"; locus "MER41_19q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0519"; repClass "LTR"; repEnd "2272"; repFamily "ERV1"; repLeft "1592"; repStart "-3674"; chr19 rmsk exon 42495401 42495868 3188 - . gene_id "MER41_19q13.2c"; transcript_id "MER41_19q13.2c"; locus "MER41_19q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0519"; repClass "LTR"; repEnd "642"; repFamily "ERV1"; repLeft "175"; repStart "-5304"; chr19 rmsk exon 42496144 42496327 946 - . gene_id "MER41_19q13.2c"; transcript_id "MER41_19q13.2c"; locus "MER41_19q13.2c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0519"; repClass "LTR"; repEnd "182"; repFamily "ERV1"; repLeft "4"; repStart "-5764"; chr19 rmsk exon 42496330 42496959 4316 - . gene_id "MER41_19q13.2c"; transcript_id "MER41_19q13.2c"; locus "MER41_19q13.2c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0519"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_19q13.2 ### chr19 rmsk gene 42616812 42617821 . + . gene_id "MER61_19q13.2"; transcript_id "MER61_19q13.2"; locus "MER61_19q13.2"; category "internal"; intModel "MER61-int"; locid "MER61-int_0361"; model_cov "889"; model_pct "17.0"; chr19 rmsk exon 42616812 42617616 6022 + . gene_id "MER61_19q13.2"; transcript_id "MER61_19q13.2"; locus "MER61_19q13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0361"; repClass "LTR"; repEnd "3461"; repFamily "ERV1"; repLeft "-1756"; repStart "2648"; chr19 rmsk exon 42617745 42617821 620 + . gene_id "MER61_19q13.2"; transcript_id "MER61_19q13.2"; locus "MER61_19q13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0361"; repClass "LTR"; repEnd "3528"; repFamily "ERV1"; repLeft "-1689"; repStart "3452"; ### LTR19_19q13.2 ### chr19 rmsk gene 42618150 42619169 . + . gene_id "LTR19_19q13.2"; transcript_id "LTR19_19q13.2"; locus "LTR19_19q13.2"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0056"; model_cov "1006"; model_pct "18.0"; chr19 rmsk exon 42618150 42619169 6202 + . gene_id "LTR19_19q13.2"; transcript_id "LTR19_19q13.2"; locus "LTR19_19q13.2"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0056"; repClass "LTR"; repEnd "4019"; repFamily "ERV1"; repLeft "-1567"; repStart "3013"; ### HUERSP3_19q13.2c ### chr19 rmsk gene 42683090 42689360 . - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0202"; model_cov "4091"; model_pct "45.9"; chr19 rmsk exon 42683090 42683746 4329 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 42683749 42684031 1428 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8659"; repStart "0"; chr19 rmsk exon 42684225 42684986 12583 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6149"; repStart "-2007"; chr19 rmsk exon 42685302 42686355 12583 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "6148"; repFamily "ERV1"; repLeft "5090"; repStart "-2771"; chr19 rmsk exon 42687369 42688872 10363 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "3577"; repStart "-3824"; chr19 rmsk exon 42688874 42689360 3025 - . gene_id "HUERSP3_19q13.2c"; transcript_id "HUERSP3_19q13.2c"; locus "HUERSP3_19q13.2c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0202"; repClass "LTR"; repEnd "3446"; repFamily "ERV1"; repLeft "2954"; repStart "-5473"; ### HML5_19q13.2 ### chr19 rmsk gene 42696053 42698631 . + . gene_id "HML5_19q13.2"; transcript_id "HML5_19q13.2"; locus "HML5_19q13.2"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0122"; model_cov "1081"; model_pct "15.8"; chr19 rmsk exon 42696053 42696559 2035 + . gene_id "HML5_19q13.2"; transcript_id "HML5_19q13.2"; locus "HML5_19q13.2"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0122"; repClass "LTR"; repEnd "521"; repFamily "ERVK"; repLeft "-5"; repStart "1"; chr19 rmsk exon 42696595 42696938 4263 + . gene_id "HML5_19q13.2"; transcript_id "HML5_19q13.2"; locus "HML5_19q13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0122"; repClass "LTR"; repEnd "346"; repFamily "ERVK"; repLeft "-6491"; repStart "3"; chr19 rmsk exon 42697475 42697804 4263 + . gene_id "HML5_19q13.2"; transcript_id "HML5_19q13.2"; locus "HML5_19q13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0122"; repClass "LTR"; repEnd "691"; repFamily "ERVK"; repLeft "-6146"; repStart "353"; chr19 rmsk exon 42698259 42698631 2538 + . gene_id "HML5_19q13.2"; transcript_id "HML5_19q13.2"; locus "HML5_19q13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0122"; repClass "LTR"; repEnd "2735"; repFamily "ERVK"; repLeft "-4102"; repStart "2335"; ### HUERSP3B_19q13.2 ### chr19 rmsk gene 42790564 42794718 . - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0128"; model_cov "3894"; model_pct "52.5"; chr19 rmsk exon 42790564 42790743 944 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "4637"; repStart "-2594"; chr19 rmsk exon 42790727 42791358 4213 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "4059"; repFamily "ERV1"; repLeft "3400"; repStart "-3359"; chr19 rmsk exon 42791359 42791497 732 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "3040"; repStart "-4236"; chr19 rmsk exon 42791493 42793683 6451 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-754"; repStart "-5635"; chr19 rmsk exon 42793712 42794024 1328 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "-930"; repFamily "ERV1"; repLeft "-1241"; repStart "-8348"; chr19 rmsk exon 42794025 42794082 377 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "38"; repStart "-7322"; chr19 rmsk exon 42794129 42794718 3736 - . gene_id "HUERSP3B_19q13.2"; transcript_id "HUERSP3B_19q13.2"; locus "HUERSP3B_19q13.2"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0128"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_19q13.31a ### chr19 rmsk gene 43101358 43105490 . - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0129"; model_cov "3891"; model_pct "52.5"; chr19 rmsk exon 43101358 43101532 956 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "4821"; repFamily "ERV1"; repLeft "4637"; repStart "-2597"; chr19 rmsk exon 43101516 43102147 4204 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "4059"; repFamily "ERV1"; repLeft "3400"; repStart "-3359"; chr19 rmsk exon 43102148 43102286 673 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "3040"; repStart "-4236"; chr19 rmsk exon 43102282 43104470 6389 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-754"; repStart "-5635"; chr19 rmsk exon 43104491 43104802 1418 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "-930"; repFamily "ERV1"; repLeft "-1241"; repStart "-8348"; chr19 rmsk exon 43104803 43104860 350 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "38"; repStart "-7322"; chr19 rmsk exon 43104902 43105490 3450 - . gene_id "HUERSP3B_19q13.31a"; transcript_id "HUERSP3B_19q13.31a"; locus "HUERSP3B_19q13.31a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0129"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_19q13.31b ### chr19 rmsk gene 43226418 43230569 . - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0130"; model_cov "4469"; model_pct "60.2"; chr19 rmsk exon 43226418 43227212 4147 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "3400"; repStart "-2594"; chr19 rmsk exon 43227213 43227351 685 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "3040"; repStart "-4236"; chr19 rmsk exon 43227347 43229535 6538 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-755"; repStart "-5635"; chr19 rmsk exon 43229563 43229871 1473 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "-930"; repFamily "ERV1"; repLeft "-1237"; repStart "-8348"; chr19 rmsk exon 43229876 43229933 376 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "38"; repStart "-7322"; chr19 rmsk exon 43229980 43230569 3670 - . gene_id "HUERSP3B_19q13.31b"; transcript_id "HUERSP3B_19q13.31b"; locus "HUERSP3B_19q13.31b"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0130"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP3B_19q13.31c ### chr19 rmsk gene 43288298 43292202 . - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0131"; model_cov "4465"; model_pct "60.2"; chr19 rmsk exon 43288298 43289084 4059 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "4821"; repFamily "ERV1"; repLeft "3400"; repStart "-2597"; chr19 rmsk exon 43289085 43289223 685 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "3040"; repStart "-4236"; chr19 rmsk exon 43289219 43291399 6451 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "1783"; repFamily "ERV1"; repLeft "-754"; repStart "-5635"; chr19 rmsk exon 43291428 43291736 1523 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "-930"; repFamily "ERV1"; repLeft "-1237"; repStart "-8348"; chr19 rmsk exon 43291741 43291798 376 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "38"; repStart "-7322"; chr19 rmsk exon 43291845 43292202 2431 - . gene_id "HUERSP3B_19q13.31c"; transcript_id "HUERSP3B_19q13.31c"; locus "HUERSP3B_19q13.31c"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0131"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "300"; repStart "0"; ### HERVIP10F_19q13.31 ### chr19 rmsk gene 43308380 43317344 . - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0111"; model_cov "7259"; model_pct "93.8"; chr19 rmsk exon 43308380 43308933 3260 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "7"; repStart "-18"; chr19 rmsk exon 43308946 43309076 405 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "7598"; repStart "-3"; chr19 rmsk exon 43309113 43313352 22291 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "7149"; repFamily "ERV1"; repLeft "2917"; repStart "-588"; chr19 rmsk exon 43313646 43314011 22291 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "2916"; repFamily "ERV1"; repLeft "2553"; repStart "-4821"; chr19 rmsk exon 43314474 43317093 22291 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "2552"; repFamily "ERV1"; repLeft "24"; repStart "-5185"; chr19 rmsk exon 43317133 43317344 1122 - . gene_id "HERVIP10F_19q13.31"; transcript_id "HERVIP10F_19q13.31"; locus "HERVIP10F_19q13.31"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10F-int_0111"; repClass "LTR"; repEnd "573"; repFamily "ERV1"; repLeft "355"; repStart "-18"; ### HERVH_19q13.31 ### chr19 rmsk gene 43323511 43329384 . - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1170"; model_cov "5061"; model_pct "65.6"; chr19 rmsk exon 43323511 43323944 2737 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 43323945 43324321 2585 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr19 rmsk exon 43324320 43324537 1385 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 43324539 43325200 4395 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19 rmsk exon 43325203 43325703 3324 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr19 rmsk exon 43325694 43328950 19603 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr19 rmsk exon 43328951 43329384 2745 - . gene_id "HERVH_19q13.31"; transcript_id "HERVH_19q13.31"; locus "HERVH_19q13.31"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1170"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_19q13.31a ### chr19 rmsk gene 43364281 43366105 . - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3447"; model_cov "939"; model_pct "16.6"; chr19 rmsk exon 43364281 43364449 384 - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3447"; repClass "LTR"; repEnd "5251"; repFamily "ERVL"; repLeft "5078"; repStart "-416"; chr19 rmsk exon 43365064 43365376 319 - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3447"; repClass "LTR"; repEnd "4427"; repFamily "ERVL"; repLeft "4112"; repStart "-1240"; chr19 rmsk exon 43365621 43365817 559 - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3447"; repClass "LTR"; repEnd "3705"; repFamily "ERVL"; repLeft "3498"; repStart "-1962"; chr19 rmsk exon 43365847 43365961 360 - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3447"; repClass "LTR"; repEnd "3442"; repFamily "ERVL"; repLeft "3326"; repStart "-2225"; chr19 rmsk exon 43365982 43366105 309 - . gene_id "ERVLE_19q13.31a"; transcript_id "ERVLE_19q13.31a"; locus "ERVLE_19q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3447"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "3142"; repStart "-2397"; ### ERVLE_19q13.31b ### chr19 rmsk gene 43369119 43370655 . + . gene_id "ERVLE_19q13.31b"; transcript_id "ERVLE_19q13.31b"; locus "ERVLE_19q13.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3448"; model_cov "695"; model_pct "12.3"; chr19 rmsk exon 43369119 43369315 559 + . gene_id "ERVLE_19q13.31b"; transcript_id "ERVLE_19q13.31b"; locus "ERVLE_19q13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3448"; repClass "LTR"; repEnd "3705"; repFamily "ERVL"; repLeft "-1962"; repStart "3498"; chr19 rmsk exon 43369560 43369872 337 + . gene_id "ERVLE_19q13.31b"; transcript_id "ERVLE_19q13.31b"; locus "ERVLE_19q13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3448"; repClass "LTR"; repEnd "4427"; repFamily "ERVL"; repLeft "-1240"; repStart "4112"; chr19 rmsk exon 43370487 43370655 355 + . gene_id "ERVLE_19q13.31b"; transcript_id "ERVLE_19q13.31b"; locus "ERVLE_19q13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3448"; repClass "LTR"; repEnd "5251"; repFamily "ERVL"; repLeft "-416"; repStart "5078"; ### ERV316A3_19q13.31 ### chr19 rmsk gene 43813525 43818789 . - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2638"; model_cov "2029"; model_pct "38.8"; chr19 rmsk exon 43813525 43813695 1728 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3812"; repStart "-1270"; chr19 rmsk exon 43813988 43814210 1728 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "3585"; repStart "-1415"; chr19 rmsk exon 43814514 43815220 1728 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "3584"; repFamily "ERVL"; repLeft "2840"; repStart "-1642"; chr19 rmsk exon 43816099 43816665 1584 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "1911"; repStart "-2740"; chr19 rmsk exon 43817557 43817713 822 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "1898"; repFamily "ERVL"; repLeft "1710"; repStart "-3328"; chr19 rmsk exon 43818014 43818173 822 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1557"; repStart "-3517"; chr19 rmsk exon 43818240 43818402 397 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "566"; repFamily "ERVL"; repLeft "400"; repStart "-2"; chr19 rmsk exon 43818432 43818708 407 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "350"; repFamily "ERVL"; repLeft "61"; repStart "-218"; chr19 rmsk exon 43818697 43818789 355 - . gene_id "ERV316A3_19q13.31"; transcript_id "ERV316A3_19q13.31"; locus "ERV316A3_19q13.31"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2638"; repClass "LTR"; repEnd "14"; repFamily "ERVL"; repLeft "-78"; repStart "-554"; ### MER4B_19q13.31 ### chr19 rmsk gene 43955744 43958531 . - . gene_id "MER4B_19q13.31"; transcript_id "MER4B_19q13.31"; locus "MER4B_19q13.31"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0446"; model_cov "1369"; model_pct "20.3"; chr19 rmsk exon 43955744 43955871 3577 - . gene_id "MER4B_19q13.31"; transcript_id "MER4B_19q13.31"; locus "MER4B_19q13.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0446"; repClass "LTR"; repEnd "5230"; repFamily "ERV1"; repLeft "4185"; repStart "-1528"; chr19 rmsk exon 43957540 43957595 3577 - . gene_id "MER4B_19q13.31"; transcript_id "MER4B_19q13.31"; locus "MER4B_19q13.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0446"; repClass "LTR"; repEnd "4184"; repFamily "ERV1"; repLeft "4126"; repStart "-2574"; chr19 rmsk exon 43958267 43958531 1431 - . gene_id "MER4B_19q13.31"; transcript_id "MER4B_19q13.31"; locus "MER4B_19q13.31"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0446"; repClass "LTR"; repEnd "4013"; repFamily "ERV1"; repLeft "3747"; repStart "-2745"; ### ERVLB4_19q13.31a ### chr19 rmsk gene 43979355 43980979 . + . gene_id "ERVLB4_19q13.31a"; transcript_id "ERVLB4_19q13.31a"; locus "ERVLB4_19q13.31a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1667"; model_cov "1108"; model_pct "19.4"; chr19 rmsk exon 43979355 43979745 461 + . gene_id "ERVLB4_19q13.31a"; transcript_id "ERVLB4_19q13.31a"; locus "ERVLB4_19q13.31a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1667"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-19"; repStart "1"; chr19 rmsk exon 43979767 43980152 1141 + . gene_id "ERVLB4_19q13.31a"; transcript_id "ERVLB4_19q13.31a"; locus "ERVLB4_19q13.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1667"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-5314"; repStart "2"; chr19 rmsk exon 43980185 43980412 609 + . gene_id "ERVLB4_19q13.31a"; transcript_id "ERVLB4_19q13.31a"; locus "ERVLB4_19q13.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1667"; repClass "LTR"; repEnd "1827"; repFamily "ERVL"; repLeft "-3887"; repStart "1596"; chr19 rmsk exon 43980524 43980979 1443 + . gene_id "ERVLB4_19q13.31a"; transcript_id "ERVLB4_19q13.31a"; locus "ERVLB4_19q13.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1667"; repClass "LTR"; repEnd "3207"; repFamily "ERVL"; repLeft "-2507"; repStart "2728"; ### ERVLB4_19q13.31b ### chr19 rmsk gene 44017410 44019341 . + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1668"; model_cov "1403"; model_pct "24.6"; chr19 rmsk exon 44017410 44017713 751 + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1668"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "-5383"; repStart "21"; chr19 rmsk exon 44018024 44018044 751 + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1668"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-5363"; repStart "332"; chr19 rmsk exon 44018067 44018298 484 + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1668"; repClass "LTR"; repEnd "1825"; repFamily "ERVL"; repLeft "-3889"; repStart "1590"; chr19 rmsk exon 44018405 44018943 2506 + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1668"; repClass "LTR"; repEnd "3273"; repFamily "ERVL"; repLeft "-2441"; repStart "2719"; chr19 rmsk exon 44019073 44019341 2506 + . gene_id "ERVLB4_19q13.31b"; transcript_id "ERVLB4_19q13.31b"; locus "ERVLB4_19q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1668"; repClass "LTR"; repEnd "3559"; repFamily "ERVL"; repLeft "-2155"; repStart "3274"; ### ERVLB4_19q13.31c ### chr19 rmsk gene 44035341 44036764 . + . gene_id "ERVLB4_19q13.31c"; transcript_id "ERVLB4_19q13.31c"; locus "ERVLB4_19q13.31c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1669"; model_cov "1004"; model_pct "17.6"; chr19 rmsk exon 44035341 44035497 386 + . gene_id "ERVLB4_19q13.31c"; transcript_id "ERVLB4_19q13.31c"; locus "ERVLB4_19q13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1669"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "-3823"; repStart "1725"; chr19 rmsk exon 44035606 44035780 1532 + . gene_id "ERVLB4_19q13.31c"; transcript_id "ERVLB4_19q13.31c"; locus "ERVLB4_19q13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1669"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "-2813"; repStart "2719"; chr19 rmsk exon 44036074 44036459 1532 + . gene_id "ERVLB4_19q13.31c"; transcript_id "ERVLB4_19q13.31c"; locus "ERVLB4_19q13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1669"; repClass "LTR"; repEnd "3318"; repFamily "ERVL"; repLeft "-2396"; repStart "2902"; chr19 rmsk exon 44036544 44036764 1532 + . gene_id "ERVLB4_19q13.31c"; transcript_id "ERVLB4_19q13.31c"; locus "ERVLB4_19q13.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1669"; repClass "LTR"; repEnd "3559"; repFamily "ERVL"; repLeft "-2155"; repStart "3319"; ### ERVLB4_19q13.31d ### chr19 rmsk gene 44110194 44111136 . + . gene_id "ERVLB4_19q13.31d"; transcript_id "ERVLB4_19q13.31d"; locus "ERVLB4_19q13.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1670"; model_cov "663"; model_pct "11.6"; chr19 rmsk exon 44110194 44110605 1939 + . gene_id "ERVLB4_19q13.31d"; transcript_id "ERVLB4_19q13.31d"; locus "ERVLB4_19q13.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1670"; repClass "LTR"; repEnd "3310"; repFamily "ERVL"; repLeft "-2404"; repStart "2889"; chr19 rmsk exon 44110914 44111136 1939 + . gene_id "ERVLB4_19q13.31d"; transcript_id "ERVLB4_19q13.31d"; locus "ERVLB4_19q13.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1670"; repClass "LTR"; repEnd "3553"; repFamily "ERVL"; repLeft "-2161"; repStart "3311"; ### ERVLE_19q13.31c ### chr19 rmsk gene 44181562 44184726 . + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3449"; model_cov "2454"; model_pct "43.3"; chr19 rmsk exon 44181562 44182209 5792 + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3449"; repClass "LTR"; repEnd "1146"; repFamily "ERVL"; repLeft "-4521"; repStart "464"; chr19 rmsk exon 44182471 44183577 5792 + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3449"; repClass "LTR"; repEnd "2295"; repFamily "ERVL"; repLeft "-3372"; repStart "1147"; chr19 rmsk exon 44183631 44183946 5792 + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3449"; repClass "LTR"; repEnd "2625"; repFamily "ERVL"; repLeft "-3042"; repStart "2296"; chr19 rmsk exon 44184168 44184299 5792 + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3449"; repClass "LTR"; repEnd "2792"; repFamily "ERVL"; repLeft "-2875"; repStart "2626"; chr19 rmsk exon 44184593 44184726 5792 + . gene_id "ERVLE_19q13.31c"; transcript_id "ERVLE_19q13.31c"; locus "ERVLE_19q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3449"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2745"; repStart "2793"; ### ERVLE_19q13.31d ### chr19 rmsk gene 44195798 44196936 . + . gene_id "ERVLE_19q13.31d"; transcript_id "ERVLE_19q13.31d"; locus "ERVLE_19q13.31d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3450"; model_cov "1013"; model_pct "17.9"; chr19 rmsk exon 44195798 44196775 3449 + . gene_id "ERVLE_19q13.31d"; transcript_id "ERVLE_19q13.31d"; locus "ERVLE_19q13.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3450"; repClass "LTR"; repEnd "4496"; repFamily "ERVL"; repLeft "-1171"; repStart "3483"; chr19 rmsk exon 44196843 44196936 332 + . gene_id "ERVLE_19q13.31d"; transcript_id "ERVLE_19q13.31d"; locus "ERVLE_19q13.31d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3450"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-2"; repStart "556"; ### PRIMA41_19q13.31 ### chr19 rmsk gene 44282650 44284525 . + . gene_id "PRIMA41_19q13.31"; transcript_id "PRIMA41_19q13.31"; locus "PRIMA41_19q13.31"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0147"; model_cov "1024"; model_pct "13.2"; chr19 rmsk exon 44282650 44283216 1585 + . gene_id "PRIMA41_19q13.31"; transcript_id "PRIMA41_19q13.31"; locus "PRIMA41_19q13.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0147"; repClass "LTR"; repEnd "6885"; repFamily "ERV1"; repLeft "-871"; repStart "6317"; chr19 rmsk exon 44283767 44284141 1585 + . gene_id "PRIMA41_19q13.31"; transcript_id "PRIMA41_19q13.31"; locus "PRIMA41_19q13.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0147"; repClass "LTR"; repEnd "7268"; repFamily "ERV1"; repLeft "-488"; repStart "6886"; chr19 rmsk exon 44284436 44284525 1585 + . gene_id "PRIMA41_19q13.31"; transcript_id "PRIMA41_19q13.31"; locus "PRIMA41_19q13.31"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0147"; repClass "LTR"; repEnd "7343"; repFamily "ERV1"; repLeft "-413"; repStart "7269"; ### HML3_19q13.31 ### chr19 rmsk gene 44631504 44634709 . - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0225"; model_cov "2705"; model_pct "44.9"; chr19 rmsk exon 44631504 44631994 3627 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "8"; repStart "0"; chr19 rmsk exon 44631995 44632881 6663 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "5471"; repFamily "ERVK"; repLeft "4583"; repStart "-550"; chr19 rmsk exon 44632869 44633099 1870 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr19 rmsk exon 44633100 44633216 842 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2666"; repStart "-3223"; chr19 rmsk exon 44633216 44634395 9366 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "1280"; repStart "-3540"; chr19 rmsk exon 44634396 44634650 2104 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "350"; repStart "-5417"; chr19 rmsk exon 44634651 44634709 474 - . gene_id "HML3_19q13.31"; transcript_id "HML3_19q13.31"; locus "HML3_19q13.31"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0225"; repClass "LTR"; repEnd "60"; repFamily "ERVK"; repLeft "2"; repStart "-453"; ### PABLA_19q13.32 ### chr19 rmsk gene 46059546 46061292 . - . gene_id "PABLA_19q13.32"; transcript_id "PABLA_19q13.32"; locus "PABLA_19q13.32"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0144"; model_cov "1744"; model_pct "34.8"; chr19 rmsk exon 46059546 46061292 10828 - . gene_id "PABLA_19q13.32"; transcript_id "PABLA_19q13.32"; locus "PABLA_19q13.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0144"; repClass "LTR"; repEnd "4598"; repFamily "ERV1"; repLeft "2854"; repStart "-417"; ### HERVH_19q13.32a ### chr19 rmsk gene 46102204 46109320 . - . gene_id "HERVH_19q13.32a"; transcript_id "HERVH_19q13.32a"; locus "HERVH_19q13.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1171"; model_cov "6574"; model_pct "85.2"; chr19 rmsk exon 46102204 46102754 2823 - . gene_id "HERVH_19q13.32a"; transcript_id "HERVH_19q13.32a"; locus "HERVH_19q13.32a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1171"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-5"; chr19 rmsk exon 46102755 46103306 3359 - . gene_id "HERVH_19q13.32a"; transcript_id "HERVH_19q13.32a"; locus "HERVH_19q13.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1171"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7154"; repStart "0"; chr19 rmsk exon 46103297 46109083 33675 - . gene_id "HERVH_19q13.32a"; transcript_id "HERVH_19q13.32a"; locus "HERVH_19q13.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1171"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "1"; repStart "-1697"; chr19 rmsk exon 46109084 46109320 2873 - . gene_id "HERVH_19q13.32a"; transcript_id "HERVH_19q13.32a"; locus "HERVH_19q13.32a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1171"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "236"; repStart "0"; ### HERVL32_19q13.32 ### chr19 rmsk gene 46164533 46165959 . + . gene_id "HERVL32_19q13.32"; transcript_id "HERVL32_19q13.32"; locus "HERVL32_19q13.32"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0048"; model_cov "1454"; model_pct "42.5"; chr19 rmsk exon 46164533 46165959 4412 + . gene_id "HERVL32_19q13.32"; transcript_id "HERVL32_19q13.32"; locus "HERVL32_19q13.32"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0048"; repClass "LTR"; repEnd "942"; repFamily "ERVL"; repLeft "-2476"; repStart "-512"; ### HERVH_19q13.32b ### chr19 rmsk gene 46201641 46203386 . - . gene_id "HERVH_19q13.32b"; transcript_id "HERVH_19q13.32b"; locus "HERVH_19q13.32b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1172"; model_cov "1665"; model_pct "21.6"; chr19 rmsk exon 46201641 46201848 1111 - . gene_id "HERVH_19q13.32b"; transcript_id "HERVH_19q13.32b"; locus "HERVH_19q13.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1172"; repClass "LTR"; repEnd "2563"; repFamily "ERV1"; repLeft "2359"; repStart "-5150"; chr19 rmsk exon 46201849 46202975 3653 - . gene_id "HERVH_19q13.32b"; transcript_id "HERVH_19q13.32b"; locus "HERVH_19q13.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1172"; repClass "LTR"; repEnd "1462"; repFamily "ERV1"; repLeft "1"; repStart "-6251"; chr19 rmsk exon 46202976 46203386 2447 - . gene_id "HERVH_19q13.32b"; transcript_id "HERVH_19q13.32b"; locus "HERVH_19q13.32b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1172"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_19q13.32c ### chr19 rmsk gene 46273189 46278852 . - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1173"; model_cov "5116"; model_pct "66.3"; chr19 rmsk exon 46273189 46273603 2727 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19 rmsk exon 46273604 46273979 2382 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19 rmsk exon 46273980 46274198 1466 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 46274200 46274814 4126 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19 rmsk exon 46274817 46275666 6069 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr19 rmsk exon 46275646 46278433 15228 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr19 rmsk exon 46278439 46278852 2764 - . gene_id "HERVH_19q13.32c"; transcript_id "HERVH_19q13.32c"; locus "HERVH_19q13.32c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1173"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_19q13.32 ### chr19 rmsk gene 46367379 46369106 . + . gene_id "ERVLB4_19q13.32"; transcript_id "ERVLB4_19q13.32"; locus "ERVLB4_19q13.32"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1673"; model_cov "1312"; model_pct "23.0"; chr19 rmsk exon 46367379 46367832 2318 + . gene_id "ERVLB4_19q13.32"; transcript_id "ERVLB4_19q13.32"; locus "ERVLB4_19q13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1673"; repClass "LTR"; repEnd "1573"; repFamily "ERVL"; repLeft "-4141"; repStart "1081"; chr19 rmsk exon 46367824 46368510 3977 + . gene_id "ERVLB4_19q13.32"; transcript_id "ERVLB4_19q13.32"; locus "ERVLB4_19q13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1673"; repClass "LTR"; repEnd "2678"; repFamily "ERVL"; repLeft "-3036"; repStart "1984"; chr19 rmsk exon 46368921 46369044 760 + . gene_id "ERVLB4_19q13.32"; transcript_id "ERVLB4_19q13.32"; locus "ERVLB4_19q13.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1673"; repClass "LTR"; repEnd "2791"; repFamily "ERVL"; repLeft "-2923"; repStart "2665"; chr19 rmsk exon 46369051 46369106 252 + . gene_id "ERVLB4_19q13.32"; transcript_id "ERVLB4_19q13.32"; locus "ERVLB4_19q13.32"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1673"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-54"; repStart "445"; ### HERVH_19q13.32d ### chr19 rmsk gene 47049869 47055408 . - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1174"; model_cov "4809"; model_pct "62.3"; chr19 rmsk exon 47049869 47050295 3395 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr19 rmsk exon 47050296 47050657 2016 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr19 rmsk exon 47050656 47050872 1294 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 47050954 47051517 3664 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "5050"; repFamily "ERV1"; repLeft "4488"; repStart "-2663"; chr19 rmsk exon 47051520 47052017 3120 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr19 rmsk exon 47052008 47052153 777 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19 rmsk exon 47052148 47054978 15834 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 47054981 47055408 3337 - . gene_id "HERVH_19q13.32d"; transcript_id "HERVH_19q13.32d"; locus "HERVH_19q13.32d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1174"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19q13.32e ### chr19 rmsk gene 47392829 47398756 . + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1175"; model_cov "5263"; model_pct "68.2"; chr19 rmsk exon 47392829 47393269 3245 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 47393272 47397073 8376 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr19 rmsk exon 47397076 47397719 3955 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr19 rmsk exon 47397721 47397937 1247 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 47397936 47398315 2183 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr19 rmsk exon 47398316 47398756 3209 + . gene_id "HERVH_19q13.32e"; transcript_id "HERVH_19q13.32e"; locus "HERVH_19q13.32e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1175"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_19q13.33 ### chr19 rmsk gene 49215081 49217370 . + . gene_id "ERVLE_19q13.33"; transcript_id "ERVLE_19q13.33"; locus "ERVLE_19q13.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3456"; model_cov "979"; model_pct "17.3"; chr19 rmsk exon 49215081 49215361 774 + . gene_id "ERVLE_19q13.33"; transcript_id "ERVLE_19q13.33"; locus "ERVLE_19q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3456"; repClass "LTR"; repEnd "1907"; repFamily "ERVL"; repLeft "-3760"; repStart "1607"; chr19 rmsk exon 49216089 49216546 1311 + . gene_id "ERVLE_19q13.33"; transcript_id "ERVLE_19q13.33"; locus "ERVLE_19q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3456"; repClass "LTR"; repEnd "3404"; repFamily "ERVL"; repLeft "-2263"; repStart "2925"; chr19 rmsk exon 49216855 49216986 1311 + . gene_id "ERVLE_19q13.33"; transcript_id "ERVLE_19q13.33"; locus "ERVLE_19q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3456"; repClass "LTR"; repEnd "3531"; repFamily "ERVL"; repLeft "-2136"; repStart "3405"; chr19 rmsk exon 49217295 49217370 1311 + . gene_id "ERVLE_19q13.33"; transcript_id "ERVLE_19q13.33"; locus "ERVLE_19q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3456"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2061"; repStart "3532"; ### HERVL40_19q13.33 ### chr19 rmsk gene 49222180 49229968 . + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0430"; model_cov "1566"; model_pct "28.3"; chr19 rmsk exon 49222180 49222342 832 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "473"; repFamily "ERVL"; repLeft "-46"; repStart "318"; chr19 rmsk exon 49222701 49222804 416 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "120"; repFamily "ERVL"; repLeft "-5410"; repStart "17"; chr19 rmsk exon 49224738 49224868 286 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "1540"; repFamily "ERVL"; repLeft "-3990"; repStart "1414"; chr19 rmsk exon 49225538 49225763 912 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "2922"; repFamily "ERVL"; repLeft "-2608"; repStart "2692"; chr19 rmsk exon 49226069 49226252 912 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "3119"; repFamily "ERVL"; repLeft "-2411"; repStart "2923"; chr19 rmsk exon 49226267 49226414 1265 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "4021"; repFamily "ERVL"; repLeft "-1509"; repStart "3874"; chr19 rmsk exon 49226705 49226826 1265 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "4137"; repFamily "ERVL"; repLeft "-1393"; repStart "4022"; chr19 rmsk exon 49227054 49227228 1265 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "4331"; repFamily "ERVL"; repLeft "-1199"; repStart "4138"; chr19 rmsk exon 49228078 49228273 612 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "-337"; repStart "4984"; chr19 rmsk exon 49229025 49229172 1027 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "5418"; repFamily "ERVL"; repLeft "-112"; repStart "5282"; chr19 rmsk exon 49229461 49229573 1027 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5419"; chr19 rmsk exon 49229579 49229968 1350 + . gene_id "HERVL40_19q13.33"; transcript_id "HERVL40_19q13.33"; locus "HERVL40_19q13.33"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0430"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### HERVL32_19q13.33a ### chr19 rmsk gene 49278812 49280305 . + . gene_id "HERVL32_19q13.33a"; transcript_id "HERVL32_19q13.33a"; locus "HERVL32_19q13.33a"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0049"; model_cov "949"; model_pct "27.8"; chr19 rmsk exon 49278812 49278876 1260 + . gene_id "HERVL32_19q13.33a"; transcript_id "HERVL32_19q13.33a"; locus "HERVL32_19q13.33a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0049"; repClass "LTR"; repEnd "284"; repFamily "ERVL"; repLeft "-173"; repStart "219"; chr19 rmsk exon 49279174 49279350 1260 + . gene_id "HERVL32_19q13.33a"; transcript_id "HERVL32_19q13.33a"; locus "HERVL32_19q13.33a"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0049"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "0"; repStart "285"; chr19 rmsk exon 49279361 49280305 3923 + . gene_id "HERVL32_19q13.33a"; transcript_id "HERVL32_19q13.33a"; locus "HERVL32_19q13.33a"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0049"; repClass "LTR"; repEnd "959"; repFamily "ERVL"; repLeft "-2459"; repStart "10"; ### HERVL32_19q13.33b ### chr19 rmsk gene 49280598 49283716 . + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0050"; model_cov "1557"; model_pct "45.6"; chr19 rmsk exon 49280598 49280807 3923 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "-661"; repFamily "ERVL"; repLeft "-4079"; repStart "-868"; chr19 rmsk exon 49281247 49281580 3262 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "-1468"; repStart "1610"; chr19 rmsk exon 49281893 49282163 3262 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "2205"; repFamily "ERVL"; repLeft "-1213"; repStart "1951"; chr19 rmsk exon 49282675 49283162 3262 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "2734"; repFamily "ERVL"; repLeft "-684"; repStart "2206"; chr19 rmsk exon 49283142 49283337 549 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "3010"; repFamily "ERVL"; repLeft "-408"; repStart "2856"; chr19 rmsk exon 49283641 49283716 461 + . gene_id "HERVL32_19q13.33b"; transcript_id "HERVL32_19q13.33b"; locus "HERVL32_19q13.33b"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0050"; repClass "LTR"; repEnd "3094"; repFamily "ERVL"; repLeft "-324"; repStart "3020"; ### HERVL32_19q13.33c ### chr19 rmsk gene 49283904 49285585 . + . gene_id "HERVL32_19q13.33c"; transcript_id "HERVL32_19q13.33c"; locus "HERVL32_19q13.33c"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0052"; model_cov "445"; model_pct "13.0"; chr19 rmsk exon 49283904 49284132 275 + . gene_id "HERVL32_19q13.33c"; transcript_id "HERVL32_19q13.33c"; locus "HERVL32_19q13.33c"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0052"; repClass "LTR"; repEnd "1819"; repFamily "ERVL"; repLeft "-1599"; repStart "1515"; chr19 rmsk exon 49284847 49284980 496 + . gene_id "HERVL32_19q13.33c"; transcript_id "HERVL32_19q13.33c"; locus "HERVL32_19q13.33c"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0052"; repClass "LTR"; repEnd "3411"; repFamily "ERVL"; repLeft "-7"; repStart "3270"; chr19 rmsk exon 49285329 49285379 393 + . gene_id "HERVL32_19q13.33c"; transcript_id "HERVL32_19q13.33c"; locus "HERVL32_19q13.33c"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0052"; repClass "LTR"; repEnd "51"; repFamily "ERVL"; repLeft "-406"; repStart "1"; chr19 rmsk exon 49285376 49285585 1305 + . gene_id "HERVL32_19q13.33c"; transcript_id "HERVL32_19q13.33c"; locus "HERVL32_19q13.33c"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0052"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-22"; repStart "220"; ### HERV3_19q13.33 ### chr19 rmsk gene 49952495 49957720 . + . gene_id "HERV3_19q13.33"; transcript_id "HERV3_19q13.33"; locus "HERV3_19q13.33"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0072"; model_cov "3384"; model_pct "40.2"; chr19 rmsk exon 49952495 49953047 4074 + . gene_id "HERV3_19q13.33"; transcript_id "HERV3_19q13.33"; locus "HERV3_19q13.33"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0072"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 49953048 49955205 8069 + . gene_id "HERV3_19q13.33"; transcript_id "HERV3_19q13.33"; locus "HERV3_19q13.33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0072"; repClass "LTR"; repEnd "2099"; repFamily "ERV1"; repLeft "-6327"; repStart "1"; chr19 rmsk exon 49956030 49957315 6537 + . gene_id "HERV3_19q13.33"; transcript_id "HERV3_19q13.33"; locus "HERV3_19q13.33"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0072"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "7140"; chr19 rmsk exon 49957318 49957720 3224 + . gene_id "HERV3_19q13.33"; transcript_id "HERV3_19q13.33"; locus "HERV3_19q13.33"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0072"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-118"; repStart "1"; ### HERVEA_19q13.33 ### chr19 rmsk gene 50346977 50350190 . - . gene_id "HERVEA_19q13.33"; transcript_id "HERVEA_19q13.33"; locus "HERVEA_19q13.33"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0091"; model_cov "2711"; model_pct "34.5"; chr19 rmsk exon 50346977 50347478 2984 - . gene_id "HERVEA_19q13.33"; transcript_id "HERVEA_19q13.33"; locus "HERVEA_19q13.33"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0091"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 50347480 50350190 17924 - . gene_id "HERVEA_19q13.33"; transcript_id "HERVEA_19q13.33"; locus "HERVEA_19q13.33"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0091"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "5136"; repStart "0"; ### ERVLB4_19q13.33a ### chr19 rmsk gene 50882256 50883600 . + . gene_id "ERVLB4_19q13.33a"; transcript_id "ERVLB4_19q13.33a"; locus "ERVLB4_19q13.33a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1677"; model_cov "1277"; model_pct "22.3"; chr19 rmsk exon 50882256 50882832 2278 + . gene_id "ERVLB4_19q13.33a"; transcript_id "ERVLB4_19q13.33a"; locus "ERVLB4_19q13.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1677"; repClass "LTR"; repEnd "1765"; repFamily "ERVL"; repLeft "-3949"; repStart "1169"; chr19 rmsk exon 50882827 50883145 1322 + . gene_id "ERVLB4_19q13.33a"; transcript_id "ERVLB4_19q13.33a"; locus "ERVLB4_19q13.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1677"; repClass "LTR"; repEnd "2246"; repFamily "ERVL"; repLeft "-3468"; repStart "1921"; chr19 rmsk exon 50883250 50883600 1689 + . gene_id "ERVLB4_19q13.33a"; transcript_id "ERVLB4_19q13.33a"; locus "ERVLB4_19q13.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1677"; repClass "LTR"; repEnd "2596"; repFamily "ERVL"; repLeft "-3118"; repStart "2240"; ### ERVLB4_19q13.33b ### chr19 rmsk gene 50888600 50889192 . + . gene_id "ERVLB4_19q13.33b"; transcript_id "ERVLB4_19q13.33b"; locus "ERVLB4_19q13.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1678"; model_cov "595"; model_pct "10.4"; chr19 rmsk exon 50888600 50889192 2404 + . gene_id "ERVLB4_19q13.33b"; transcript_id "ERVLB4_19q13.33b"; locus "ERVLB4_19q13.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1678"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "-5103"; repStart "16"; ### HML1_19q13.41a ### chr19 rmsk gene 51397351 51399492 . - . gene_id "HML1_19q13.41a"; transcript_id "HML1_19q13.41a"; locus "HML1_19q13.41a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0115"; model_cov "1330"; model_pct "21.8"; chr19 rmsk exon 51397351 51397964 3801 - . gene_id "HML1_19q13.41a"; transcript_id "HML1_19q13.41a"; locus "HML1_19q13.41a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0115"; repClass "LTR"; repEnd "595"; repFamily "ERVK"; repLeft "3"; repStart "-13"; chr19 rmsk exon 51397978 51398770 2565 - . gene_id "HML1_19q13.41a"; transcript_id "HML1_19q13.41a"; locus "HML1_19q13.41a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0115"; repClass "LTR"; repEnd "6071"; repFamily "ERVK"; repLeft "5274"; repStart "-25"; chr19 rmsk exon 51398888 51399245 736 - . gene_id "HML1_19q13.41a"; transcript_id "HML1_19q13.41a"; locus "HML1_19q13.41a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0115"; repClass "LTR"; repEnd "5097"; repFamily "ERVK"; repLeft "4740"; repStart "-999"; chr19 rmsk exon 51399317 51399492 338 - . gene_id "HML1_19q13.41a"; transcript_id "HML1_19q13.41a"; locus "HML1_19q13.41a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0115"; repClass "LTR"; repEnd "4634"; repFamily "ERVK"; repLeft "4458"; repStart "-1462"; ### HML1_19q13.41b ### chr19 rmsk gene 51399543 51402957 . - . gene_id "HML1_19q13.41b"; transcript_id "HML1_19q13.41b"; locus "HML1_19q13.41b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0116"; model_cov "2488"; model_pct "40.8"; chr19 rmsk exon 51399543 51400479 7143 - . gene_id "HML1_19q13.41b"; transcript_id "HML1_19q13.41b"; locus "HML1_19q13.41b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0116"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "4966"; repStart "-199"; chr19 rmsk exon 51400463 51401302 11661 - . gene_id "HML1_19q13.41b"; transcript_id "HML1_19q13.41b"; locus "HML1_19q13.41b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0116"; repClass "LTR"; repEnd "1559"; repFamily "ERVK"; repLeft "727"; repStart "-4537"; chr19 rmsk exon 51401601 51402323 11661 - . gene_id "HML1_19q13.41b"; transcript_id "HML1_19q13.41b"; locus "HML1_19q13.41b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0116"; repClass "LTR"; repEnd "726"; repFamily "ERVK"; repLeft "1"; repStart "-5370"; chr19 rmsk exon 51402324 51402957 4079 - . gene_id "HML1_19q13.41b"; transcript_id "HML1_19q13.41b"; locus "HML1_19q13.41b"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0116"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### ERVLE_19q13.41a ### chr19 rmsk gene 51514294 51515166 . + . gene_id "ERVLE_19q13.41a"; transcript_id "ERVLE_19q13.41a"; locus "ERVLE_19q13.41a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3458"; model_cov "905"; model_pct "16.0"; chr19 rmsk exon 51514294 51515166 2373 + . gene_id "ERVLE_19q13.41a"; transcript_id "ERVLE_19q13.41a"; locus "ERVLE_19q13.41a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3458"; repClass "LTR"; repEnd "3778"; repFamily "ERVL"; repLeft "-1889"; repStart "2873"; ### ERVLE_19q13.41b ### chr19 rmsk gene 51676035 51677579 . + . gene_id "ERVLE_19q13.41b"; transcript_id "ERVLE_19q13.41b"; locus "ERVLE_19q13.41b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3459"; model_cov "715"; model_pct "12.6"; chr19 rmsk exon 51676035 51676236 1388 + . gene_id "ERVLE_19q13.41b"; transcript_id "ERVLE_19q13.41b"; locus "ERVLE_19q13.41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3459"; repClass "LTR"; repEnd "4701"; repFamily "ERVL"; repLeft "-966"; repStart "4494"; chr19 rmsk exon 51677081 51677579 1388 + . gene_id "ERVLE_19q13.41b"; transcript_id "ERVLE_19q13.41b"; locus "ERVLE_19q13.41b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3459"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "-457"; repStart "4702"; ### ERVLB4_19q13.41 ### chr19 rmsk gene 51780527 51782818 . + . gene_id "ERVLB4_19q13.41"; transcript_id "ERVLB4_19q13.41"; locus "ERVLB4_19q13.41"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1680"; model_cov "1547"; model_pct "27.1"; chr19 rmsk exon 51780527 51781861 6817 + . gene_id "ERVLB4_19q13.41"; transcript_id "ERVLB4_19q13.41"; locus "ERVLB4_19q13.41"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1680"; repClass "LTR"; repEnd "5487"; repFamily "ERVL"; repLeft "-227"; repStart "4126"; chr19 rmsk exon 51782241 51782426 938 + . gene_id "ERVLB4_19q13.41"; transcript_id "ERVLB4_19q13.41"; locus "ERVLB4_19q13.41"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1680"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5527"; chr19 rmsk exon 51782427 51782818 1243 + . gene_id "ERVLB4_19q13.41"; transcript_id "ERVLB4_19q13.41"; locus "ERVLB4_19q13.41"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1680"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL74_19q13.41a ### chr19 rmsk gene 51801312 51802250 . + . gene_id "HERVL74_19q13.41a"; transcript_id "HERVL74_19q13.41a"; locus "HERVL74_19q13.41a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0119"; model_cov "703"; model_pct "12.4"; chr19 rmsk exon 51801312 51801498 3102 + . gene_id "HERVL74_19q13.41a"; transcript_id "HERVL74_19q13.41a"; locus "HERVL74_19q13.41a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0119"; repClass "LTR"; repEnd "1219"; repFamily "ERVL"; repLeft "-4466"; repStart "1030"; chr19 rmsk exon 51801754 51802250 3102 + . gene_id "HERVL74_19q13.41a"; transcript_id "HERVL74_19q13.41a"; locus "HERVL74_19q13.41a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0119"; repClass "LTR"; repEnd "1734"; repFamily "ERVL"; repLeft "-3951"; repStart "1220"; ### HML6_19q13.41f ### chr19 rmsk gene 51804696 51811939 . - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; category "tandem*"; intModel "HERVK3-int"; locid "HERVK3-int_0088"; model_cov "4161"; model_pct "57.8"; chr19 rmsk exon 51804696 51805164 3577 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 51805165 51806140 7547 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "6223"; repStart "0"; chr19 rmsk exon 51806140 51806803 4650 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "4644"; repStart "-1885"; chr19 rmsk exon 51806803 51806888 677 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "4181"; repStart "-2936"; chr19 rmsk exon 51806892 51807023 981 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "3518"; repFamily "ERVK"; repLeft "3387"; repStart "-3684"; chr19 rmsk exon 51807038 51807485 2744 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "1"; repStart "-40"; chr19 rmsk exon 51807486 51811585 27970 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "4169"; repFamily "ERVK"; repLeft "8"; repStart "-3033"; chr19 rmsk exon 51811609 51811772 1138 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "322"; repStart "0"; chr19 rmsk exon 51811772 51811939 1234 - . gene_id "HML6_19q13.41f"; transcript_id "HML6_19q13.41f"; locus "HML6_19q13.41f"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0088"; repClass "LTR"; repEnd "170"; repFamily "ERVK"; repLeft "1"; repStart "-314"; ### HERVL74_19q13.41b ### chr19 rmsk gene 51811941 51812767 . + . gene_id "HERVL74_19q13.41b"; transcript_id "HERVL74_19q13.41b"; locus "HERVL74_19q13.41b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0121"; model_cov "809"; model_pct "14.2"; chr19 rmsk exon 51811941 51812767 3430 + . gene_id "HERVL74_19q13.41b"; transcript_id "HERVL74_19q13.41b"; locus "HERVL74_19q13.41b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0121"; repClass "LTR"; repEnd "2099"; repFamily "ERVL"; repLeft "-3586"; repStart "1290"; ### HML6_19q13.41a ### chr19 rmsk gene 51975875 51981430 . + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0089"; model_cov "4626"; model_pct "64.2"; chr19 rmsk exon 51975875 51976091 1383 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "238"; repFamily "ERVK"; repLeft "-246"; repStart "1"; chr19 rmsk exon 51976091 51976151 341 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "237"; repFamily "ERVK"; repLeft "-247"; repStart "151"; chr19 rmsk exon 51976152 51976436 1876 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "-18"; repStart "151"; chr19 rmsk exon 51976454 51978688 15477 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "2288"; repFamily "ERVK"; repLeft "-4914"; repStart "1"; chr19 rmsk exon 51978687 51981020 16531 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "4863"; chr19 rmsk exon 51981021 51981430 2990 + . gene_id "HML6_19q13.41a"; transcript_id "HML6_19q13.41a"; locus "HML6_19q13.41a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0089"; repClass "LTR"; repEnd "435"; repFamily "ERVK"; repLeft "-49"; repStart "1"; ### HERV4_19q13.41 ### chr19 rmsk gene 52059698 52062168 . + . gene_id "HERV4_19q13.41"; transcript_id "HERV4_19q13.41"; locus "HERV4_19q13.41"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0129"; model_cov "1637"; model_pct "25.0"; chr19 rmsk exon 52059698 52060235 2842 + . gene_id "HERV4_19q13.41"; transcript_id "HERV4_19q13.41"; locus "HERV4_19q13.41"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0129"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 52060259 52061551 6182 + . gene_id "HERV4_19q13.41"; transcript_id "HERV4_19q13.41"; locus "HERV4_19q13.41"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0129"; repClass "LTR"; repEnd "1338"; repFamily "ERV1"; repLeft "-5201"; repStart "19"; chr19 rmsk exon 52061841 52062168 6182 + . gene_id "HERV4_19q13.41"; transcript_id "HERV4_19q13.41"; locus "HERV4_19q13.41"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0129"; repClass "LTR"; repEnd "1657"; repFamily "ERV1"; repLeft "-4882"; repStart "1339"; ### MER4_19q13.41a ### chr19 rmsk gene 52102788 52107649 . + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0760"; model_cov "2708"; model_pct "41.0"; chr19 rmsk exon 52102788 52103331 2112 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "3674"; repFamily "ERV1"; repLeft "-2924"; repStart "3080"; chr19 rmsk exon 52103333 52103895 7893 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "4397"; repFamily "ERV1"; repLeft "-2201"; repStart "3816"; chr19 rmsk exon 52104191 52104730 7893 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "4939"; repFamily "ERV1"; repLeft "-1659"; repStart "4398"; chr19 rmsk exon 52105016 52105041 7893 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "4954"; repFamily "ERV1"; repLeft "-1644"; repStart "4940"; chr19 rmsk exon 52105329 52105764 7893 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "5371"; repFamily "ERV1"; repLeft "-1227"; repStart "4955"; chr19 rmsk exon 52106047 52106152 7893 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "5470"; repFamily "ERV1"; repLeft "-1128"; repStart "5372"; chr19 rmsk exon 52106462 52106910 2868 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0760"; repClass "LTR"; repEnd "6538"; repFamily "ERV1"; repLeft "-60"; repStart "6074"; chr19 rmsk exon 52107237 52107649 2431 + . gene_id "MER4_19q13.41a"; transcript_id "MER4_19q13.41a"; locus "MER4_19q13.41a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0760"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-25"; repStart "1"; ### MER4_19q13.41b ### chr19 rmsk gene 52146518 52152215 . + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0761"; model_cov "4085"; model_pct "61.9"; chr19 rmsk exon 52146518 52147147 3515 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-5913"; repStart "72"; chr19 rmsk exon 52147163 52147565 2598 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "1165"; repFamily "ERV1"; repLeft "-5433"; repStart "756"; chr19 rmsk exon 52147866 52147969 2598 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "1244"; repFamily "ERV1"; repLeft "-5354"; repStart "1166"; chr19 rmsk exon 52148062 52148503 1657 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "3246"; chr19 rmsk exon 52148502 52148700 6690 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "4005"; repFamily "ERV1"; repLeft "-2593"; repStart "3815"; chr19 rmsk exon 52148995 52150045 6690 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "5087"; repFamily "ERV1"; repLeft "-1511"; repStart "4006"; chr19 rmsk exon 52150658 52150874 7496 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "5519"; repFamily "ERV1"; repLeft "-1079"; repStart "5308"; chr19 rmsk exon 52151171 52152215 7496 + . gene_id "MER4_19q13.41b"; transcript_id "MER4_19q13.41b"; locus "MER4_19q13.41b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0761"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "5520"; ### HML3_19q13.41a ### chr19 rmsk gene 52300620 52307999 . - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0226"; model_cov "6657"; model_pct "100.0"; chr19 rmsk exon 52300620 52301084 3617 - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0226"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "30"; repStart "0"; chr19 rmsk exon 52301095 52301998 2041 - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0226"; repClass "LTR"; repEnd "5956"; repFamily "ERVK"; repLeft "4269"; repStart "-65"; chr19 rmsk exon 52301999 52304816 35219 - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0226"; repClass "LTR"; repEnd "4972"; repFamily "ERVK"; repLeft "2154"; repStart "-1049"; chr19 rmsk exon 52305120 52307502 35219 - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0226"; repClass "LTR"; repEnd "2153"; repFamily "ERVK"; repLeft "1"; repStart "-3868"; chr19 rmsk exon 52307503 52307999 3823 - . gene_id "HML3_19q13.41a"; transcript_id "HML3_19q13.41a"; locus "HML3_19q13.41a"; repName "MER9B"; geneRegion "ltr"; locid "HERVK9-int_0226"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML6_19q13.41b ### chr19 rmsk gene 52331491 52332825 . + . gene_id "HML6_19q13.41b"; transcript_id "HML6_19q13.41b"; locus "HML6_19q13.41b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0090"; model_cov "865"; model_pct "12.0"; chr19 rmsk exon 52331491 52331939 2747 + . gene_id "HML6_19q13.41b"; transcript_id "HML6_19q13.41b"; locus "HML6_19q13.41b"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0090"; repClass "LTR"; repEnd "479"; repFamily "ERVK"; repLeft "-5"; repStart "4"; chr19 rmsk exon 52331979 52332825 5559 + . gene_id "HML6_19q13.41b"; transcript_id "HML6_19q13.41b"; locus "HML6_19q13.41b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0090"; repClass "LTR"; repEnd "866"; repFamily "ERVK"; repLeft "-6336"; repStart "1"; ### HML6_19q13.41c ### chr19 rmsk gene 52410183 52414733 . - . gene_id "HML6_19q13.41c"; transcript_id "HML6_19q13.41c"; locus "HML6_19q13.41c"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0091"; model_cov "3704"; model_pct "51.4"; chr19 rmsk exon 52410183 52410610 2968 - . gene_id "HML6_19q13.41c"; transcript_id "HML6_19q13.41c"; locus "HML6_19q13.41c"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0091"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "1"; repStart "-3"; chr19 rmsk exon 52410630 52414266 25068 - . gene_id "HML6_19q13.41c"; transcript_id "HML6_19q13.41c"; locus "HML6_19q13.41c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0091"; repClass "LTR"; repEnd "3705"; repFamily "ERVK"; repLeft "1"; repStart "-3497"; chr19 rmsk exon 52414315 52414733 2668 - . gene_id "HML6_19q13.41c"; transcript_id "HML6_19q13.41c"; locus "HML6_19q13.41c"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0091"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "1"; repStart "-3"; ### HERVKC4_19q13.41 ### chr19 rmsk gene 52460867 52466497 . - . gene_id "HERVKC4_19q13.41"; transcript_id "HERVKC4_19q13.41"; locus "HERVKC4_19q13.41"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0023"; model_cov "6988"; model_pct "100.0"; chr19 rmsk exon 52460867 52460892 230 - . gene_id "HERVKC4_19q13.41"; transcript_id "HERVKC4_19q13.41"; locus "HERVKC4_19q13.41"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0023"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "523"; repStart "0"; chr19 rmsk exon 52460895 52463454 6932 - . gene_id "HERVKC4_19q13.41"; transcript_id "HERVKC4_19q13.41"; locus "HERVKC4_19q13.41"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0023"; repClass "LTR"; repEnd "3737"; repFamily "ERVK"; repLeft "1345"; repStart "-1525"; chr19 rmsk exon 52463457 52465921 12892 - . gene_id "HERVKC4_19q13.41"; transcript_id "HERVKC4_19q13.41"; locus "HERVKC4_19q13.41"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0023"; repClass "LTR"; repEnd "2428"; repFamily "ERVK"; repLeft "-2168"; repStart "-2834"; chr19 rmsk exon 52465925 52466497 3309 - . gene_id "HERVKC4_19q13.41"; transcript_id "HERVKC4_19q13.41"; locus "HERVKC4_19q13.41"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0023"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_19q13.41a ### chr19 rmsk gene 52468552 52470830 . + . gene_id "HERVL_19q13.41a"; transcript_id "HERVL_19q13.41a"; locus "HERVL_19q13.41a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1210"; model_cov "949"; model_pct "16.8"; chr19 rmsk exon 52468552 52469137 2467 + . gene_id "HERVL_19q13.41a"; transcript_id "HERVL_19q13.41a"; locus "HERVL_19q13.41a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1210"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr19 rmsk exon 52469138 52469157 5046 + . gene_id "HERVL_19q13.41a"; transcript_id "HERVL_19q13.41a"; locus "HERVL_19q13.41a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1210"; repClass "LTR"; repEnd "20"; repFamily "ERVL"; repLeft "-5634"; repStart "1"; chr19 rmsk exon 52469460 52470364 5046 + . gene_id "HERVL_19q13.41a"; transcript_id "HERVL_19q13.41a"; locus "HERVL_19q13.41a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1210"; repClass "LTR"; repEnd "951"; repFamily "ERVL"; repLeft "-4703"; repStart "21"; chr19 rmsk exon 52470454 52470830 2035 + . gene_id "HERVL_19q13.41a"; transcript_id "HERVL_19q13.41a"; locus "HERVL_19q13.41a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1210"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "-197"; repStart "6"; ### HML6_19q13.41d ### chr19 rmsk gene 52475656 52481443 . - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0092"; model_cov "3431"; model_pct "47.6"; chr19 rmsk exon 52475656 52478704 22506 - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0092"; repClass "LTR"; repEnd "3456"; repFamily "ERVK"; repLeft "420"; repStart "-3746"; chr19 rmsk exon 52479013 52479253 22506 - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0092"; repClass "LTR"; repEnd "419"; repFamily "ERVK"; repLeft "194"; repStart "-6783"; chr19 rmsk exon 52479571 52479612 22506 - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0092"; repClass "LTR"; repEnd "193"; repFamily "ERVK"; repLeft "154"; repStart "-7009"; chr19 rmsk exon 52481148 52481278 818 - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0092"; repClass "LTR"; repEnd "159"; repFamily "ERVK"; repLeft "28"; repStart "-7043"; chr19 rmsk exon 52481279 52481443 910 - . gene_id "HML6_19q13.41d"; transcript_id "HML6_19q13.41d"; locus "HML6_19q13.41d"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0092"; repClass "LTR"; repEnd "418"; repFamily "ERVK"; repLeft "238"; repStart "-14"; ### HERVH_19q13.41a ### chr19 rmsk gene 52620684 52627315 . + . gene_id "HERVH_19q13.41a"; transcript_id "HERVH_19q13.41a"; locus "HERVH_19q13.41a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1176"; model_cov "6005"; model_pct "77.9"; chr19 rmsk exon 52620684 52621112 2642 + . gene_id "HERVH_19q13.41a"; transcript_id "HERVH_19q13.41a"; locus "HERVH_19q13.41a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1176"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr19 rmsk exon 52621127 52625394 15573 + . gene_id "HERVH_19q13.41a"; transcript_id "HERVH_19q13.41a"; locus "HERVH_19q13.41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1176"; repClass "LTR"; repEnd "5609"; repFamily "ERV1"; repLeft "-2104"; repStart "1076"; chr19 rmsk exon 52625393 52626863 8555 + . gene_id "HERVH_19q13.41a"; transcript_id "HERVH_19q13.41a"; locus "HERVH_19q13.41a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1176"; repClass "LTR"; repEnd "7688"; repFamily "ERV1"; repLeft "-25"; repStart "6216"; chr19 rmsk exon 52626894 52627315 2526 + . gene_id "HERVH_19q13.41a"; transcript_id "HERVH_19q13.41a"; locus "HERVH_19q13.41a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1176"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_19q13.41b ### chr19 rmsk gene 52627795 52633395 . + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1177"; model_cov "4906"; model_pct "63.6"; chr19 rmsk exon 52627795 52628192 2504 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 52628195 52631191 20769 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr19 rmsk exon 52631171 52631318 888 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 52631318 52631810 3562 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr19 rmsk exon 52631813 52632449 4188 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr19 rmsk exon 52632451 52632666 1319 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 52632667 52633045 2391 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr19 rmsk exon 52633046 52633395 2114 + . gene_id "HERVH_19q13.41b"; transcript_id "HERVH_19q13.41b"; locus "HERVH_19q13.41b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1177"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10F_19q13.41a ### chr19 rmsk gene 52649405 52651539 . + . gene_id "HERVIP10F_19q13.41a"; transcript_id "HERVIP10F_19q13.41a"; locus "HERVIP10F_19q13.41a"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0112"; model_cov "1858"; model_pct "24.0"; chr19 rmsk exon 52649405 52650252 6473 + . gene_id "HERVIP10F_19q13.41a"; transcript_id "HERVIP10F_19q13.41a"; locus "HERVIP10F_19q13.41a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0112"; repClass "LTR"; repEnd "2303"; repFamily "ERV1"; repLeft "-5434"; repStart "1421"; chr19 rmsk exon 52650557 52651539 6473 + . gene_id "HERVIP10F_19q13.41a"; transcript_id "HERVIP10F_19q13.41a"; locus "HERVIP10F_19q13.41a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0112"; repClass "LTR"; repEnd "3280"; repFamily "ERV1"; repLeft "-4457"; repStart "2304"; ### HERVIP10FH_19q13.41 ### chr19 rmsk gene 52665503 52668412 . + . gene_id "HERVIP10FH_19q13.41"; transcript_id "HERVIP10FH_19q13.41"; locus "HERVIP10FH_19q13.41"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0173"; model_cov "2230"; model_pct "43.7"; chr19 rmsk exon 52665503 52665878 2415 + . gene_id "HERVIP10FH_19q13.41"; transcript_id "HERVIP10FH_19q13.41"; locus "HERVIP10FH_19q13.41"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0173"; repClass "LTR"; repEnd "439"; repFamily "ERV1"; repLeft "-72"; repStart "1"; chr19 rmsk exon 52666183 52666204 2415 + . gene_id "HERVIP10FH_19q13.41"; transcript_id "HERVIP10FH_19q13.41"; locus "HERVIP10FH_19q13.41"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0173"; repClass "LTR"; repEnd "458"; repFamily "ERV1"; repLeft "-53"; repStart "440"; chr19 rmsk exon 52666188 52668412 15797 + . gene_id "HERVIP10FH_19q13.41"; transcript_id "HERVIP10FH_19q13.41"; locus "HERVIP10FH_19q13.41"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0173"; repClass "LTR"; repEnd "3126"; repFamily "ERV1"; repLeft "-1976"; repStart "896"; ### HERVIP10F_19q13.41b ### chr19 rmsk gene 52668411 52670554 . + . gene_id "HERVIP10F_19q13.41b"; transcript_id "HERVIP10F_19q13.41b"; locus "HERVIP10F_19q13.41b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0113"; model_cov "1426"; model_pct "18.4"; chr19 rmsk exon 52668411 52668479 313 + . gene_id "HERVIP10F_19q13.41b"; transcript_id "HERVIP10F_19q13.41b"; locus "HERVIP10F_19q13.41b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0113"; repClass "LTR"; repEnd "6252"; repFamily "ERV1"; repLeft "-1485"; repStart "6184"; chr19 rmsk exon 52668610 52669973 10023 + . gene_id "HERVIP10F_19q13.41b"; transcript_id "HERVIP10F_19q13.41b"; locus "HERVIP10F_19q13.41b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0113"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "-2"; repStart "6377"; chr19 rmsk exon 52669975 52670554 3066 + . gene_id "HERVIP10F_19q13.41b"; transcript_id "HERVIP10F_19q13.41b"; locus "HERVIP10F_19q13.41b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0113"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_19q13.41a ### chr19 rmsk gene 52745023 52748339 . - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0115"; model_cov "5405"; model_pct "71.7"; chr19 rmsk exon 52745023 52748339 26124 - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0115"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "1276"; repStart "-855"; ### HML2_19q13.41b ### chr19 rmsk gene 52748422 52750454 . - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0116"; model_cov "1362"; model_pct "18.1"; chr19 rmsk exon 52748422 52748830 26124 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "6013"; repStart "-855"; chr19 rmsk exon 52748809 52749491 4464 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "2"; repStart "-6840"; chr19 rmsk exon 52749493 52750454 5671 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "5"; repStart "0"; ### HML3_19q13.41b ### chr19 rmsk gene 52750459 52754253 . - . gene_id "HML3_19q13.41b"; transcript_id "HML3_19q13.41b"; locus "HML3_19q13.41b"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0227"; model_cov "3836"; model_pct "63.7"; chr19 rmsk exon 52750459 52752277 14592 - . gene_id "HML3_19q13.41b"; transcript_id "HML3_19q13.41b"; locus "HML3_19q13.41b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0227"; repClass "LTR"; repEnd "5545"; repFamily "ERVK"; repLeft "3723"; repStart "-476"; chr19 rmsk exon 52752278 52753962 20970 - . gene_id "HML3_19q13.41b"; transcript_id "HML3_19q13.41b"; locus "HML3_19q13.41b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0227"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1045"; repStart "-3223"; chr19 rmsk exon 52754002 52754253 20970 - . gene_id "HML3_19q13.41b"; transcript_id "HML3_19q13.41b"; locus "HML3_19q13.41b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0227"; repClass "LTR"; repEnd "1044"; repFamily "ERVK"; repLeft "783"; repStart "-4977"; ### HML3_19q13.41c ### chr19 rmsk gene 52754314 52755540 . - . gene_id "HML3_19q13.41c"; transcript_id "HML3_19q13.41c"; locus "HML3_19q13.41c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0228"; model_cov "781"; model_pct "13.0"; chr19 rmsk exon 52754314 52755061 20970 - . gene_id "HML3_19q13.41c"; transcript_id "HML3_19q13.41c"; locus "HML3_19q13.41c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0228"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2017"; repStart "-3223"; chr19 rmsk exon 52755062 52755540 3843 - . gene_id "HML3_19q13.41c"; transcript_id "HML3_19q13.41c"; locus "HML3_19q13.41c"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0228"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_19q13.41c ### chr19 rmsk gene 52755542 52756855 . + . gene_id "HERVH_19q13.41c"; transcript_id "HERVH_19q13.41c"; locus "HERVH_19q13.41c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1178"; model_cov "937"; model_pct "12.1"; chr19 rmsk exon 52755542 52755871 2193 + . gene_id "HERVH_19q13.41c"; transcript_id "HERVH_19q13.41c"; locus "HERVH_19q13.41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1178"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4817"; chr19 rmsk exon 52755876 52756088 1306 + . gene_id "HERVH_19q13.41c"; transcript_id "HERVH_19q13.41c"; locus "HERVH_19q13.41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1178"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 52756089 52756464 2475 + . gene_id "HERVH_19q13.41c"; transcript_id "HERVH_19q13.41c"; locus "HERVH_19q13.41c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1178"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr19 rmsk exon 52756465 52756855 2073 + . gene_id "HERVH_19q13.41c"; transcript_id "HERVH_19q13.41c"; locus "HERVH_19q13.41c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1178"; repClass "LTR"; repEnd "441"; repFamily "ERV1"; repLeft "-9"; repStart "1"; ### HARLEQUIN_19q13.41 ### chr19 rmsk gene 52898525 52904852 . - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0168"; model_cov "5163"; model_pct "74.9"; chr19 rmsk exon 52898525 52898997 3761 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 52898998 52899462 16839 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6447"; repStart "0"; chr19 rmsk exon 52899759 52902003 16839 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "6446"; repFamily "ERV1"; repLeft "4175"; repStart "-450"; chr19 rmsk exon 52901995 52902576 4516 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "3959"; repFamily "ERV1"; repLeft "3353"; repStart "-2937"; chr19 rmsk exon 52902578 52903175 3959 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "1966"; repStart "-4323"; chr19 rmsk exon 52903150 52903363 1597 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "1788"; repFamily "ERV1"; repLeft "1572"; repStart "-5108"; chr19 rmsk exon 52903349 52903999 4323 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "262"; repStart "-5993"; chr19 rmsk exon 52904001 52904372 2687 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "1"; repStart "-6522"; chr19 rmsk exon 52904374 52904852 4081 - . gene_id "HARLEQUIN_19q13.41"; transcript_id "HARLEQUIN_19q13.41"; locus "HARLEQUIN_19q13.41"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0168"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVE_19q13.41 ### chr19 rmsk gene 52956727 52962193 . + . gene_id "HERVE_19q13.41"; transcript_id "HERVE_19q13.41"; locus "HERVE_19q13.41"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0158"; model_cov "5019"; model_pct "64.2"; chr19 rmsk exon 52956727 52957204 3400 + . gene_id "HERVE_19q13.41"; transcript_id "HERVE_19q13.41"; locus "HERVE_19q13.41"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0158"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr19 rmsk exon 52957205 52957363 1106 + . gene_id "HERVE_19q13.41"; transcript_id "HERVE_19q13.41"; locus "HERVE_19q13.41"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0158"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "-7688"; repStart "-33"; chr19 rmsk exon 52957363 52960571 22418 + . gene_id "HERVE_19q13.41"; transcript_id "HERVE_19q13.41"; locus "HERVE_19q13.41"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0158"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "-2629"; repStart "1974"; chr19 rmsk exon 52960545 52962193 11115 + . gene_id "HERVE_19q13.41"; transcript_id "HERVE_19q13.41"; locus "HERVE_19q13.41"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0158"; repClass "LTR"; repEnd "7006"; repFamily "ERV1"; repLeft "-807"; repStart "5355"; ### HML6_19q13.41e ### chr19 rmsk gene 52984535 52989576 . - . gene_id "HML6_19q13.41e"; transcript_id "HML6_19q13.41e"; locus "HML6_19q13.41e"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0093"; model_cov "4346"; model_pct "60.3"; chr19 rmsk exon 52984535 52984948 2032 - . gene_id "HML6_19q13.41e"; transcript_id "HML6_19q13.41e"; locus "HML6_19q13.41e"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0093"; repClass "LTR"; repEnd "416"; repFamily "ERVK"; repLeft "1"; repStart "-16"; chr19 rmsk exon 52984951 52985718 4117 - . gene_id "HML6_19q13.41e"; transcript_id "HML6_19q13.41e"; locus "HML6_19q13.41e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0093"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6432"; repStart "-2"; chr19 rmsk exon 52985735 52988042 20850 - . gene_id "HML6_19q13.41e"; transcript_id "HML6_19q13.41e"; locus "HML6_19q13.41e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0093"; repClass "LTR"; repEnd "6285"; repFamily "ERVK"; repLeft "3956"; repStart "-917"; chr19 rmsk exon 52988329 52989576 20850 - . gene_id "HML6_19q13.41e"; transcript_id "HML6_19q13.41e"; locus "HML6_19q13.41e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0093"; repClass "LTR"; repEnd "3955"; repFamily "ERVK"; repLeft "2706"; repStart "-3247"; ### HERVFRD_19q13.41 ### chr19 rmsk gene 53007847 53011898 . + . gene_id "HERVFRD_19q13.41"; transcript_id "HERVFRD_19q13.41"; locus "HERVFRD_19q13.41"; category "internal"; intModel "MER50-int"; locid "MER50-int_0174"; model_cov "2860"; model_pct "39.7"; chr19 rmsk exon 53007847 53008093 786 + . gene_id "HERVFRD_19q13.41"; transcript_id "HERVFRD_19q13.41"; locus "HERVFRD_19q13.41"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0174"; repClass "LTR"; repEnd "356"; repFamily "ERV1"; repLeft "-6849"; repStart "109"; chr19 rmsk exon 53008806 53008938 292 + . gene_id "HERVFRD_19q13.41"; transcript_id "HERVFRD_19q13.41"; locus "HERVFRD_19q13.41"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0174"; repClass "LTR"; repEnd "1177"; repFamily "ERV1"; repLeft "-6028"; repStart "1061"; chr19 rmsk exon 53009302 53011424 4715 + . gene_id "HERVFRD_19q13.41"; transcript_id "HERVFRD_19q13.41"; locus "HERVFRD_19q13.41"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0174"; repClass "LTR"; repEnd "1895"; repFamily "ERV1"; repLeft "-5310"; repStart "-205"; chr19 rmsk exon 53011452 53011898 658 + . gene_id "HERVFRD_19q13.41"; transcript_id "HERVFRD_19q13.41"; locus "HERVFRD_19q13.41"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0174"; repClass "LTR"; repEnd "5413"; repFamily "ERV1"; repLeft "-1792"; repStart "5016"; ### HERVL_19q13.41b ### chr19 rmsk gene 53029310 53033328 . + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1211"; model_cov "2836"; model_pct "50.2"; chr19 rmsk exon 53029310 53029477 1045 + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1211"; repClass "LTR"; repEnd "1503"; repFamily "ERVL"; repLeft "-4151"; repStart "1334"; chr19 rmsk exon 53029470 53030015 18301 + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1211"; repClass "LTR"; repEnd "2280"; repFamily "ERVL"; repLeft "-3374"; repStart "1723"; chr19 rmsk exon 53030629 53031224 18301 + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1211"; repClass "LTR"; repEnd "2897"; repFamily "ERVL"; repLeft "-2757"; repStart "2281"; chr19 rmsk exon 53031534 53032167 18301 + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1211"; repClass "LTR"; repEnd "3531"; repFamily "ERVL"; repLeft "-2123"; repStart "2898"; chr19 rmsk exon 53032478 53033328 18301 + . gene_id "HERVL_19q13.41b"; transcript_id "HERVL_19q13.41b"; locus "HERVL_19q13.41b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1211"; repClass "LTR"; repEnd "4393"; repFamily "ERVL"; repLeft "-1261"; repStart "3532"; ### MER101_19q13.42 ### chr19 rmsk gene 53318359 53320565 . - . gene_id "MER101_19q13.42"; transcript_id "MER101_19q13.42"; locus "MER101_19q13.42"; category "internal"; intModel "MER101-int"; locid "MER101-int_0396"; model_cov "2042"; model_pct "30.8"; chr19 rmsk exon 53318359 53319012 1672 - . gene_id "MER101_19q13.42"; transcript_id "MER101_19q13.42"; locus "MER101_19q13.42"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0396"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "4893"; repStart "-1237"; chr19 rmsk exon 53319321 53319474 1323 - . gene_id "MER101_19q13.42"; transcript_id "MER101_19q13.42"; locus "MER101_19q13.42"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0396"; repClass "LTR"; repEnd "5052"; repFamily "ERV1"; repLeft "4907"; repStart "-1587"; chr19 rmsk exon 53319464 53320176 2721 - . gene_id "MER101_19q13.42"; transcript_id "MER101_19q13.42"; locus "MER101_19q13.42"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0396"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "2792"; repStart "-2860"; chr19 rmsk exon 53320231 53320565 1018 - . gene_id "MER101_19q13.42"; transcript_id "MER101_19q13.42"; locus "MER101_19q13.42"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0396"; repClass "LTR"; repEnd "2765"; repFamily "ERV1"; repLeft "2364"; repStart "-3874"; ### HML2_19q13.42 ### chr19 rmsk gene 53359095 53364791 . + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0117"; model_cov "3616"; model_pct "48.0"; chr19 rmsk exon 53359095 53360013 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "4740"; repFamily "ERVK"; repLeft "-2796"; repStart "3824"; chr19 rmsk exon 53361020 53363705 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "4741"; chr19 rmsk exon 53363801 53364791 6549 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV3_19q13.42a ### chr19 rmsk gene 53366857 53369236 . - . gene_id "HERV3_19q13.42a"; transcript_id "HERV3_19q13.42a"; locus "HERV3_19q13.42a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0074"; model_cov "1922"; model_pct "22.8"; chr19 rmsk exon 53366857 53367338 2899 - . gene_id "HERV3_19q13.42a"; transcript_id "HERV3_19q13.42a"; locus "HERV3_19q13.42a"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0074"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 53367341 53369236 7937 - . gene_id "HERV3_19q13.42a"; transcript_id "HERV3_19q13.42a"; locus "HERV3_19q13.42a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0074"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "6504"; repStart "0"; ### HERV3_19q13.42b ### chr19 rmsk gene 53433104 53438199 . - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0076"; model_cov "4084"; model_pct "48.5"; chr19 rmsk exon 53433104 53433578 2705 - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0076"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 53433581 53435083 6939 - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0076"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "6894"; repStart "0"; chr19 rmsk exon 53435086 53435289 16525 - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0076"; repClass "LTR"; repEnd "6682"; repFamily "ERV1"; repLeft "6502"; repStart "-1744"; chr19 rmsk exon 53435603 53437041 16525 - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0076"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5034"; repStart "-1925"; chr19 rmsk exon 53437338 53438199 16525 - . gene_id "HERV3_19q13.42b"; transcript_id "HERV3_19q13.42b"; locus "HERV3_19q13.42b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0076"; repClass "LTR"; repEnd "5033"; repFamily "ERV1"; repLeft "4128"; repStart "-3393"; ### HERV3_19q13.42c ### chr19 rmsk gene 53438276 53439966 . - . gene_id "HERV3_19q13.42c"; transcript_id "HERV3_19q13.42c"; locus "HERV3_19q13.42c"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0077"; model_cov "1265"; model_pct "15.0"; chr19 rmsk exon 53438276 53438991 16525 - . gene_id "HERV3_19q13.42c"; transcript_id "HERV3_19q13.42c"; locus "HERV3_19q13.42c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0077"; repClass "LTR"; repEnd "5033"; repFamily "ERV1"; repLeft "4280"; repStart "-3393"; chr19 rmsk exon 53439455 53439966 2677 - . gene_id "HERV3_19q13.42c"; transcript_id "HERV3_19q13.42c"; locus "HERV3_19q13.42c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0077"; repClass "LTR"; repEnd "3386"; repFamily "ERV1"; repLeft "2874"; repStart "-5040"; ### HERV3_19q13.42d ### chr19 rmsk gene 53469861 53476656 . - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0078"; model_cov "5040"; model_pct "59.8"; chr19 rmsk exon 53469861 53470137 2991 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "219"; repStart "0"; chr19 rmsk exon 53470190 53470385 2991 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "218"; repFamily "ERV1"; repLeft "3"; repStart "-341"; chr19 rmsk exon 53470390 53471527 27074 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7308"; repStart "0"; chr19 rmsk exon 53471827 53472607 27074 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "7307"; repFamily "ERV1"; repLeft "6502"; repStart "-1119"; chr19 rmsk exon 53472912 53474406 27074 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5034"; repStart "-1925"; chr19 rmsk exon 53474699 53476350 27074 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "5033"; repFamily "ERV1"; repLeft "3383"; repStart "-3393"; chr19 rmsk exon 53476644 53476656 27074 - . gene_id "HERV3_19q13.42d"; transcript_id "HERV3_19q13.42d"; locus "HERV3_19q13.42d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0078"; repClass "LTR"; repEnd "3382"; repFamily "ERV1"; repLeft "3382"; repStart "-5044"; ### HERVL40_19q13.42 ### chr19 rmsk gene 53506708 53508447 . + . gene_id "HERVL40_19q13.42"; transcript_id "HERVL40_19q13.42"; locus "HERVL40_19q13.42"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0432"; model_cov "1141"; model_pct "20.6"; chr19 rmsk exon 53506708 53506857 313 + . gene_id "HERVL40_19q13.42"; transcript_id "HERVL40_19q13.42"; locus "HERVL40_19q13.42"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0432"; repClass "LTR"; repEnd "1610"; repFamily "ERVL"; repLeft "-3920"; repStart "1460"; chr19 rmsk exon 53506861 53507147 673 + . gene_id "HERVL40_19q13.42"; transcript_id "HERVL40_19q13.42"; locus "HERVL40_19q13.42"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0432"; repClass "LTR"; repEnd "2332"; repFamily "ERVL"; repLeft "-3198"; repStart "2051"; chr19 rmsk exon 53507158 53507714 989 + . gene_id "HERVL40_19q13.42"; transcript_id "HERVL40_19q13.42"; locus "HERVL40_19q13.42"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0432"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "-2372"; repStart "2579"; chr19 rmsk exon 53508319 53508447 407 + . gene_id "HERVL40_19q13.42"; transcript_id "HERVL40_19q13.42"; locus "HERVL40_19q13.42"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0432"; repClass "LTR"; repEnd "3884"; repFamily "ERVL"; repLeft "-1646"; repStart "3753"; ### ERV316A3_19q13.42 ### chr19 rmsk gene 53622561 53625638 . - . gene_id "ERV316A3_19q13.42"; transcript_id "ERV316A3_19q13.42"; locus "ERV316A3_19q13.42"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2640"; model_cov "818"; model_pct "15.7"; chr19 rmsk exon 53622561 53622864 435 - . gene_id "ERV316A3_19q13.42"; transcript_id "ERV316A3_19q13.42"; locus "ERV316A3_19q13.42"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2640"; repClass "LTR"; repEnd "4596"; repFamily "ERVL"; repLeft "4260"; repStart "-630"; chr19 rmsk exon 53622933 53623021 262 - . gene_id "ERV316A3_19q13.42"; transcript_id "ERV316A3_19q13.42"; locus "ERV316A3_19q13.42"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2640"; repClass "LTR"; repEnd "4476"; repFamily "ERVL"; repLeft "4389"; repStart "-750"; chr19 rmsk exon 53624958 53625062 626 - . gene_id "ERV316A3_19q13.42"; transcript_id "ERV316A3_19q13.42"; locus "ERV316A3_19q13.42"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2640"; repClass "LTR"; repEnd "4141"; repFamily "ERVL"; repLeft "4037"; repStart "-1085"; chr19 rmsk exon 53625354 53625638 626 - . gene_id "ERV316A3_19q13.42"; transcript_id "ERV316A3_19q13.42"; locus "ERV316A3_19q13.42"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2640"; repClass "LTR"; repEnd "4036"; repFamily "ERVL"; repLeft "3745"; repStart "-1190"; ### MER41_19q13.42 ### chr19 rmsk gene 53652492 53653349 . + . gene_id "MER41_19q13.42"; transcript_id "MER41_19q13.42"; locus "MER41_19q13.42"; category "internal"; intModel "MER41-int"; locid "MER41-int_0522"; model_cov "1095"; model_pct "18.4"; chr19 rmsk exon 53652492 53653225 3119 + . gene_id "MER41_19q13.42"; transcript_id "MER41_19q13.42"; locus "MER41_19q13.42"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0522"; repClass "LTR"; repEnd "1712"; repFamily "ERV1"; repLeft "-4234"; repStart "723"; chr19 rmsk exon 53653242 53653349 590 + . gene_id "MER41_19q13.42"; transcript_id "MER41_19q13.42"; locus "MER41_19q13.42"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0522"; repClass "LTR"; repEnd "2007"; repFamily "ERV1"; repLeft "-3939"; repStart "1901"; ### HERVH_19q13.42a ### chr19 rmsk gene 53831404 53837348 . + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1179"; model_cov "4908"; model_pct "63.6"; chr19 rmsk exon 53831404 53831854 3444 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr19 rmsk exon 53831857 53835005 10019 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr19 rmsk exon 53835000 53835146 834 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr19 rmsk exon 53835137 53835639 3350 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr19 rmsk exon 53835642 53836300 4125 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr19 rmsk exon 53836302 53836519 1355 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr19 rmsk exon 53836518 53836897 2441 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr19 rmsk exon 53836898 53837348 3616 + . gene_id "HERVH_19q13.42a"; transcript_id "HERVH_19q13.42a"; locus "HERVH_19q13.42a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1179"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_19q13.42 ### chr19 rmsk gene 53864254 53865774 . + . gene_id "ERVLE_19q13.42"; transcript_id "ERVLE_19q13.42"; locus "ERVLE_19q13.42"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3460"; model_cov "832"; model_pct "14.7"; chr19 rmsk exon 53864254 53864794 998 + . gene_id "ERVLE_19q13.42"; transcript_id "ERVLE_19q13.42"; locus "ERVLE_19q13.42"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3460"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "-1059"; repStart "3921"; chr19 rmsk exon 53865635 53865774 327 + . gene_id "ERVLE_19q13.42"; transcript_id "ERVLE_19q13.42"; locus "ERVLE_19q13.42"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3460"; repClass "LTR"; repEnd "4901"; repFamily "ERVL"; repLeft "-766"; repStart "4756"; ### ERVLB4_19q13.42a ### chr19 rmsk gene 54568262 54571051 . + . gene_id "ERVLB4_19q13.42a"; transcript_id "ERVLB4_19q13.42a"; locus "ERVLB4_19q13.42a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1683"; model_cov "2614"; model_pct "45.7"; chr19 rmsk exon 54568262 54568494 509 + . gene_id "ERVLB4_19q13.42a"; transcript_id "ERVLB4_19q13.42a"; locus "ERVLB4_19q13.42a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1683"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "192"; chr19 rmsk exon 54568509 54571051 11870 + . gene_id "ERVLB4_19q13.42a"; transcript_id "ERVLB4_19q13.42a"; locus "ERVLB4_19q13.42a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1683"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "-3085"; repStart "15"; ### MER4B_19q13.42a ### chr19 rmsk gene 54616320 54617819 . + . gene_id "MER4B_19q13.42a"; transcript_id "MER4B_19q13.42a"; locus "MER4B_19q13.42a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0450"; model_cov "1361"; model_pct "20.1"; chr19 rmsk exon 54616320 54616418 612 + . gene_id "MER4B_19q13.42a"; transcript_id "MER4B_19q13.42a"; locus "MER4B_19q13.42a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0450"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "653"; chr19 rmsk exon 54616419 54617550 5163 + . gene_id "MER4B_19q13.42a"; transcript_id "MER4B_19q13.42a"; locus "MER4B_19q13.42a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0450"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-5612"; repStart "1"; chr19 rmsk exon 54617603 54617819 2887 + . gene_id "MER4B_19q13.42a"; transcript_id "MER4B_19q13.42a"; locus "MER4B_19q13.42a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0450"; repClass "LTR"; repEnd "2124"; repFamily "ERV1"; repLeft "-4634"; repStart "1908"; ### MER4B_19q13.42b ### chr19 rmsk gene 54618131 54620746 . + . gene_id "MER4B_19q13.42b"; transcript_id "MER4B_19q13.42b"; locus "MER4B_19q13.42b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0451"; model_cov "2109"; model_pct "31.2"; chr19 rmsk exon 54618131 54618527 7315 + . gene_id "MER4B_19q13.42b"; transcript_id "MER4B_19q13.42b"; locus "MER4B_19q13.42b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0451"; repClass "LTR"; repEnd "2030"; repFamily "ERV1"; repLeft "-4728"; repStart "1700"; chr19 rmsk exon 54618622 54620153 7315 + . gene_id "MER4B_19q13.42b"; transcript_id "MER4B_19q13.42b"; locus "MER4B_19q13.42b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0451"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-3446"; repStart "2031"; chr19 rmsk exon 54620140 54620362 1075 + . gene_id "MER4B_19q13.42b"; transcript_id "MER4B_19q13.42b"; locus "MER4B_19q13.42b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0451"; repClass "LTR"; repEnd "3643"; repFamily "ERV1"; repLeft "-3115"; repStart "3421"; chr19 rmsk exon 54620471 54620746 1795 + . gene_id "MER4B_19q13.42b"; transcript_id "MER4B_19q13.42b"; locus "MER4B_19q13.42b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0451"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "-2841"; repStart "3641"; ### ERVLB4_19q13.42b ### chr19 rmsk gene 54653775 54654578 . - . gene_id "ERVLB4_19q13.42b"; transcript_id "ERVLB4_19q13.42b"; locus "ERVLB4_19q13.42b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1684"; model_cov "765"; model_pct "13.4"; chr19 rmsk exon 54653775 54654426 2869 - . gene_id "ERVLB4_19q13.42b"; transcript_id "ERVLB4_19q13.42b"; locus "ERVLB4_19q13.42b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1684"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1514"; repStart "-3548"; chr19 rmsk exon 54654465 54654578 541 - . gene_id "ERVLB4_19q13.42b"; transcript_id "ERVLB4_19q13.42b"; locus "ERVLB4_19q13.42b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1684"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1399"; repStart "-4202"; ### HUERSP3_19q13.42 ### chr19 rmsk gene 54672643 54677704 . + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0204"; model_cov "2707"; model_pct "30.4"; chr19 rmsk exon 54672643 54672924 1253 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-356"; repStart "1"; chr19 rmsk exon 54672926 54673755 4820 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2414"; chr19 rmsk exon 54674107 54674246 710 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr19 rmsk exon 54674248 54674877 3534 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "5568"; repFamily "ERV1"; repLeft "-3351"; repStart "4901"; chr19 rmsk exon 54674872 54675433 3357 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "-2193"; repStart "6162"; chr19 rmsk exon 54675733 54675937 3357 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6727"; chr19 rmsk exon 54675949 54676052 327 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19 rmsk exon 54676829 54677103 1216 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr19 rmsk exon 54677104 54677704 2789 + . gene_id "HUERSP3_19q13.42"; transcript_id "HUERSP3_19q13.42"; locus "HUERSP3_19q13.42"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0204"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_19q13.42c ### chr19 rmsk gene 54685144 54687144 . - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1685"; model_cov "1093"; model_pct "19.1"; chr19 rmsk exon 54685144 54685429 1702 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "895"; repStart "-4534"; chr19 rmsk exon 54685432 54685765 3028 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "488"; repStart "-4881"; chr19 rmsk exon 54686076 54686304 3028 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "467"; repFamily "ERVL"; repLeft "233"; repStart "-5247"; chr19 rmsk exon 54686613 54686835 3028 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "3"; repStart "-5482"; chr19 rmsk exon 54686849 54686882 226 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "371"; repStart "-10"; chr19 rmsk exon 54686989 54687144 630 - . gene_id "ERVLB4_19q13.42c"; transcript_id "ERVLB4_19q13.42c"; locus "ERVLB4_19q13.42c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1685"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "202"; repStart "-56"; ### HERVH_19q13.42b ### chr19 rmsk gene 54894297 54900597 . - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1180"; model_cov "5420"; model_pct "70.3"; chr19 rmsk exon 54894297 54894709 2684 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19 rmsk exon 54894710 54895086 2318 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19 rmsk exon 54895087 54895302 1328 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 54895304 54897092 6099 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19 rmsk exon 54897083 54897232 901 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19 rmsk exon 54897219 54900182 19621 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19 rmsk exon 54900185 54900597 2646 - . gene_id "HERVH_19q13.42b"; transcript_id "HERVH_19q13.42b"; locus "HERVH_19q13.42b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1180"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19q13.42c ### chr19 rmsk gene 55006829 55012423 . - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1181"; model_cov "4917"; model_pct "63.7"; chr19 rmsk exon 55006829 55007237 2779 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19 rmsk exon 55007238 55007614 2212 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19 rmsk exon 55007615 55007830 1293 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19 rmsk exon 55007832 55008500 3096 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr19 rmsk exon 55008491 55008994 3458 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19 rmsk exon 55008985 55009134 974 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19 rmsk exon 55009129 55012013 18886 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19 rmsk exon 55012016 55012423 2723 - . gene_id "HERVH_19q13.42c"; transcript_id "HERVH_19q13.42c"; locus "HERVH_19q13.42c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1181"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19q13.42d ### chr19 rmsk gene 55122805 55129538 . + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1182"; model_cov "5580"; model_pct "72.3"; chr19 rmsk exon 55122805 55123222 2828 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19 rmsk exon 55123223 55125561 11944 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "2609"; repFamily "ERV1"; repLeft "-5104"; repStart "1"; chr19 rmsk exon 55125865 55126093 11944 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "2610"; chr19 rmsk exon 55126094 55126163 3891 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "3418"; repFamily "ERV1"; repLeft "-4295"; repStart "3357"; chr19 rmsk exon 55126479 55128045 6254 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "6345"; repFamily "ERV1"; repLeft "-1368"; repStart "4478"; chr19 rmsk exon 55128041 55128175 1162 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "5883"; repFamily "ERV1"; repLeft "-1830"; repStart "5747"; chr19 rmsk exon 55128473 55128605 1162 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5884"; chr19 rmsk exon 55128599 55129155 3198 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chr19 rmsk exon 55129156 55129538 2679 + . gene_id "HERVH_19q13.42d"; transcript_id "HERVH_19q13.42d"; locus "HERVH_19q13.42d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1182"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_19q13.42d ### chr19 rmsk gene 55213666 55215420 . + . gene_id "ERVLB4_19q13.42d"; transcript_id "ERVLB4_19q13.42d"; locus "ERVLB4_19q13.42d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1686"; model_cov "776"; model_pct "13.6"; chr19 rmsk exon 55213666 55214150 1078 + . gene_id "ERVLB4_19q13.42d"; transcript_id "ERVLB4_19q13.42d"; locus "ERVLB4_19q13.42d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1686"; repClass "LTR"; repEnd "2242"; repFamily "ERVL"; repLeft "-3472"; repStart "1730"; chr19 rmsk exon 55214864 55215016 540 + . gene_id "ERVLB4_19q13.42d"; transcript_id "ERVLB4_19q13.42d"; locus "ERVLB4_19q13.42d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1686"; repClass "LTR"; repEnd "2416"; repFamily "ERVL"; repLeft "-3298"; repStart "2270"; chr19 rmsk exon 55215305 55215420 540 + . gene_id "ERVLB4_19q13.42d"; transcript_id "ERVLB4_19q13.42d"; locus "ERVLB4_19q13.42d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1686"; repClass "LTR"; repEnd "2535"; repFamily "ERVL"; repLeft "-3179"; repStart "2417"; ### MER4_19q13.43a ### chr19 rmsk gene 56341503 56342332 . - . gene_id "MER4_19q13.43a"; transcript_id "MER4_19q13.43a"; locus "MER4_19q13.43a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0764"; model_cov "864"; model_pct "13.1"; chr19 rmsk exon 56341503 56341712 1073 - . gene_id "MER4_19q13.43a"; transcript_id "MER4_19q13.43a"; locus "MER4_19q13.43a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0764"; repClass "LTR"; repEnd "4099"; repFamily "ERV1"; repLeft "3849"; repStart "-2499"; chr19 rmsk exon 56341740 56342332 2434 - . gene_id "MER4_19q13.43a"; transcript_id "MER4_19q13.43a"; locus "MER4_19q13.43a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0764"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3067"; repStart "-2917"; ### MER4_19q13.43b ### chr19 rmsk gene 56343726 56346607 . - . gene_id "MER4_19q13.43b"; transcript_id "MER4_19q13.43b"; locus "MER4_19q13.43b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0765"; model_cov "2651"; model_pct "40.2"; chr19 rmsk exon 56343726 56344064 1869 - . gene_id "MER4_19q13.43b"; transcript_id "MER4_19q13.43b"; locus "MER4_19q13.43b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0765"; repClass "LTR"; repEnd "3783"; repFamily "ERV1"; repLeft "3445"; repStart "-2815"; chr19 rmsk exon 56344296 56344490 6821 - . gene_id "MER4_19q13.43b"; transcript_id "MER4_19q13.43b"; locus "MER4_19q13.43b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0765"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2298"; repStart "-4103"; chr19 rmsk exon 56345129 56346607 6821 - . gene_id "MER4_19q13.43b"; transcript_id "MER4_19q13.43b"; locus "MER4_19q13.43b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0765"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "181"; repStart "-4301"; ### HUERSP3_19q13.43 ### chr19 rmsk gene 56347586 56351719 . + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0205"; model_cov "2654"; model_pct "29.8"; chr19 rmsk exon 56347586 56348341 5032 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "3253"; repFamily "ERV1"; repLeft "-5666"; repStart "2490"; chr19 rmsk exon 56348345 56348486 810 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "-4239"; repStart "4539"; chr19 rmsk exon 56348486 56349132 4272 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-3342"; repStart "4901"; chr19 rmsk exon 56349118 56349414 3819 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "6499"; repFamily "ERV1"; repLeft "-2420"; repStart "6162"; chr19 rmsk exon 56349732 56350178 3819 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "6933"; repFamily "ERV1"; repLeft "-1986"; repStart "6500"; chr19 rmsk exon 56350169 56350268 375 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19 rmsk exon 56350888 56351094 1129 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8716"; chr19 rmsk exon 56351095 56351719 2830 + . gene_id "HUERSP3_19q13.43"; transcript_id "HUERSP3_19q13.43"; locus "HUERSP3_19q13.43"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0205"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_19q13.43 ### chr19 rmsk gene 57194409 57199946 . - . gene_id "HERVL_19q13.43"; transcript_id "HERVL_19q13.43"; locus "HERVL_19q13.43"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1213"; model_cov "4964"; model_pct "87.8"; chr19 rmsk exon 57194409 57194829 3161 - . gene_id "HERVL_19q13.43"; transcript_id "HERVL_19q13.43"; locus "HERVL_19q13.43"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1213"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "19"; repStart "-8"; chr19 rmsk exon 57195090 57199946 38964 - . gene_id "HERVL_19q13.43"; transcript_id "HERVL_19q13.43"; locus "HERVL_19q13.43"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1213"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "688"; repStart "-2"; ### MER41_19q13.43a ### chr19 rmsk gene 57275342 57278839 . - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0524"; model_cov "3391"; model_pct "57.0"; chr19 rmsk exon 57275342 57275826 3628 - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0524"; repClass "LTR"; repEnd "5457"; repFamily "ERV1"; repLeft "4543"; repStart "-489"; chr19 rmsk exon 57276277 57277257 5244 - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0524"; repClass "LTR"; repEnd "776"; repFamily "ERV1"; repLeft "-966"; repStart "-5170"; chr19 rmsk exon 57277555 57278202 5244 - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0524"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "3"; repStart "-5322"; chr19 rmsk exon 57278207 57278288 253 - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0524"; repClass "LTR"; repEnd "117"; repFamily "ERV1"; repLeft "3"; repStart "-5829"; chr19 rmsk exon 57278291 57278839 4336 - . gene_id "MER41_19q13.43a"; transcript_id "MER41_19q13.43a"; locus "MER41_19q13.43a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0524"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HML6_19q13.43a ### chr19 rmsk gene 57512616 57518488 . + . gene_id "HML6_19q13.43a"; transcript_id "HML6_19q13.43a"; locus "HML6_19q13.43a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0094"; model_cov "5098"; model_pct "70.8"; chr19 rmsk exon 57512616 57513045 2369 + . gene_id "HML6_19q13.43a"; transcript_id "HML6_19q13.43a"; locus "HML6_19q13.43a"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0094"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-57"; repStart "1"; chr19 rmsk exon 57513057 57513374 1927 + . gene_id "HML6_19q13.43a"; transcript_id "HML6_19q13.43a"; locus "HML6_19q13.43a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0094"; repClass "LTR"; repEnd "383"; repFamily "ERVK"; repLeft "-6819"; repStart "28"; chr19 rmsk exon 57513372 57518069 28050 + . gene_id "HML6_19q13.43a"; transcript_id "HML6_19q13.43a"; locus "HML6_19q13.43a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0094"; repClass "LTR"; repEnd "7199"; repFamily "ERVK"; repLeft "-3"; repStart "2456"; chr19 rmsk exon 57518074 57518488 2524 + . gene_id "HML6_19q13.43a"; transcript_id "HML6_19q13.43a"; locus "HML6_19q13.43a"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0094"; repClass "LTR"; repEnd "422"; repFamily "ERVK"; repLeft "-15"; repStart "2"; ### LTR25_19q13.43 ### chr19 rmsk gene 57561304 57567399 . - . gene_id "LTR25_19q13.43"; transcript_id "LTR25_19q13.43"; locus "LTR25_19q13.43"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0134"; model_cov "5328"; model_pct "74.1"; chr19 rmsk exon 57561304 57562626 31543 - . gene_id "LTR25_19q13.43"; transcript_id "LTR25_19q13.43"; locus "LTR25_19q13.43"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0134"; repClass "LTR"; repEnd "5964"; repFamily "ERV1"; repLeft "4643"; repStart "-1224"; chr19 rmsk exon 57562918 57563283 31543 - . gene_id "LTR25_19q13.43"; transcript_id "LTR25_19q13.43"; locus "LTR25_19q13.43"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0134"; repClass "LTR"; repEnd "4642"; repFamily "ERV1"; repLeft "4301"; repStart "-2546"; chr19 rmsk exon 57563575 57564357 31543 - . gene_id "LTR25_19q13.43"; transcript_id "LTR25_19q13.43"; locus "LTR25_19q13.43"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0134"; repClass "LTR"; repEnd "4300"; repFamily "ERV1"; repLeft "3486"; repStart "-2888"; chr19 rmsk exon 57564659 57567399 31543 - . gene_id "LTR25_19q13.43"; transcript_id "LTR25_19q13.43"; locus "LTR25_19q13.43"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0134"; repClass "LTR"; repEnd "3485"; repFamily "ERV1"; repLeft "633"; repStart "-3703"; ### HERVL74_19q13.43 ### chr19 rmsk gene 57646371 57648245 . + . gene_id "HERVL74_19q13.43"; transcript_id "HERVL74_19q13.43"; locus "HERVL74_19q13.43"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0123"; model_cov "1838"; model_pct "32.3"; chr19 rmsk exon 57646371 57646520 385 + . gene_id "HERVL74_19q13.43"; transcript_id "HERVL74_19q13.43"; locus "HERVL74_19q13.43"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0123"; repClass "LTR"; repEnd "3965"; repFamily "ERVL"; repLeft "-1720"; repStart "3797"; chr19 rmsk exon 57646613 57647644 3374 + . gene_id "HERVL74_19q13.43"; transcript_id "HERVL74_19q13.43"; locus "HERVL74_19q13.43"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0123"; repClass "LTR"; repEnd "5441"; repFamily "ERVL"; repLeft "-244"; repStart "3888"; chr19 rmsk exon 57648128 57648245 295 + . gene_id "HERVL74_19q13.43"; transcript_id "HERVL74_19q13.43"; locus "HERVL74_19q13.43"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0123"; repClass "LTR"; repEnd "5649"; repFamily "ERVL"; repLeft "-36"; repStart "5532"; ### LTR46_19q13.43 ### chr19 rmsk gene 57651316 57656645 . + . gene_id "LTR46_19q13.43"; transcript_id "LTR46_19q13.43"; locus "LTR46_19q13.43"; category "oneside"; intModel "LTR46-int"; locid "LTR46-int_0021"; model_cov "5374"; model_pct "76.9"; chr19 rmsk exon 57651316 57651433 333 + . gene_id "LTR46_19q13.43"; transcript_id "LTR46_19q13.43"; locus "LTR46_19q13.43"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0021"; repClass "LTR"; repEnd "121"; repFamily "ERV1"; repLeft "-339"; repStart "1"; chr19 rmsk exon 57651488 57651612 449 + . gene_id "LTR46_19q13.43"; transcript_id "LTR46_19q13.43"; locus "LTR46_19q13.43"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0021"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "-53"; repStart "275"; chr19 rmsk exon 57651646 57653192 4976 + . gene_id "LTR46_19q13.43"; transcript_id "LTR46_19q13.43"; locus "LTR46_19q13.43"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0021"; repClass "LTR"; repEnd "1399"; repFamily "ERV1"; repLeft "-5586"; repStart "-765"; chr19 rmsk exon 57653419 57656645 16815 + . gene_id "LTR46_19q13.43"; transcript_id "LTR46_19q13.43"; locus "LTR46_19q13.43"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0021"; repClass "LTR"; repEnd "4675"; repFamily "ERV1"; repLeft "-2310"; repStart "1465"; ### PRIMAX_19q13.43 ### chr19 rmsk gene 57763516 57767119 . + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0032"; model_cov "2101"; model_pct "51.2"; chr19 rmsk exon 57763516 57763666 2435 + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0032"; repClass "LTR"; repEnd "1709"; repFamily "ERV1"; repLeft "-2393"; repStart "1564"; chr19 rmsk exon 57763964 57764480 2435 + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0032"; repClass "LTR"; repEnd "2232"; repFamily "ERV1"; repLeft "-1870"; repStart "1710"; chr19 rmsk exon 57764785 57765532 2435 + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0032"; repClass "LTR"; repEnd "2990"; repFamily "ERV1"; repLeft "-1112"; repStart "2233"; chr19 rmsk exon 57765837 57765991 2435 + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0032"; repClass "LTR"; repEnd "3142"; repFamily "ERV1"; repLeft "-960"; repStart "2991"; chr19 rmsk exon 57766583 57767119 2435 + . gene_id "PRIMAX_19q13.43"; transcript_id "PRIMAX_19q13.43"; locus "PRIMAX_19q13.43"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0032"; repClass "LTR"; repEnd "3669"; repFamily "ERV1"; repLeft "-433"; repStart "3143"; ### HERVIP10FH_19q13.43 ### chr19 rmsk gene 57799186 57805431 . - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0175"; model_cov "3790"; model_pct "74.3"; chr19 rmsk exon 57799186 57799725 4280 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "1"; repStart "-36"; chr19 rmsk exon 57799729 57800140 992 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "4684"; repStart "-2"; chr19 rmsk exon 57800290 57801329 5273 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "4692"; repFamily "ERV1"; repLeft "3622"; repStart "-410"; chr19 rmsk exon 57801628 57802442 5273 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "3621"; repFamily "ERV1"; repLeft "2769"; repStart "-1481"; chr19 rmsk exon 57802627 57802708 416 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "2787"; repFamily "ERV1"; repLeft "2705"; repStart "-2315"; chr19 rmsk exon 57802848 57803420 2782 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "2597"; repFamily "ERV1"; repLeft "2041"; repStart "-2505"; chr19 rmsk exon 57803911 57804541 2069 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "815"; repFamily "ERV1"; repLeft "1"; repStart "-4287"; chr19 rmsk exon 57804542 57804788 4514 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "343"; repStart "0"; chr19 rmsk exon 57805078 57805431 4514 - . gene_id "HERVIP10FH_19q13.43"; transcript_id "HERVIP10FH_19q13.43"; locus "HERVIP10FH_19q13.43"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0175"; repClass "LTR"; repEnd "342"; repFamily "ERV1"; repLeft "3"; repStart "-249"; ### MER41_19q13.43b ### chr19 rmsk gene 57892052 57893158 . + . gene_id "MER41_19q13.43b"; transcript_id "MER41_19q13.43b"; locus "MER41_19q13.43b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0525"; model_cov "1032"; model_pct "17.4"; chr19 rmsk exon 57892052 57892251 1635 + . gene_id "MER41_19q13.43b"; transcript_id "MER41_19q13.43b"; locus "MER41_19q13.43b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0525"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "355"; chr19 rmsk exon 57892252 57893158 4805 + . gene_id "MER41_19q13.43b"; transcript_id "MER41_19q13.43b"; locus "MER41_19q13.43b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0525"; repClass "LTR"; repEnd "1062"; repFamily "ERV1"; repLeft "-4884"; repStart "30"; ### HML1_19q13.43 ### chr19 rmsk gene 57896193 57904466 . + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0117"; model_cov "7109"; model_pct "100.0"; chr19 rmsk exon 57896193 57898664 36085 + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0117"; repClass "LTR"; repEnd "2801"; repFamily "ERVK"; repLeft "-3295"; repStart "321"; chr19 rmsk exon 57898970 57900839 36085 + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0117"; repClass "LTR"; repEnd "4730"; repFamily "ERVK"; repLeft "-1366"; repStart "2802"; chr19 rmsk exon 57901135 57902661 36085 + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0117"; repClass "LTR"; repEnd "5210"; repFamily "ERVK"; repLeft "-886"; repStart "3393"; chr19 rmsk exon 57902979 57903855 14139 + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0117"; repClass "LTR"; repEnd "6095"; repFamily "ERVK"; repLeft "-1"; repStart "5211"; chr19 rmsk exon 57903856 57904466 3193 + . gene_id "HML1_19q13.43"; transcript_id "HML1_19q13.43"; locus "HML1_19q13.43"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0117"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "17"; ### HERV4_19q13.43a ### chr19 rmsk gene 58248684 58250591 . - . gene_id "HERV4_19q13.43a"; transcript_id "HERV4_19q13.43a"; locus "HERV4_19q13.43a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0132"; model_cov "1992"; model_pct "30.5"; chr19 rmsk exon 58248684 58249213 3047 - . gene_id "HERV4_19q13.43a"; transcript_id "HERV4_19q13.43a"; locus "HERV4_19q13.43a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0132"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19 rmsk exon 58249215 58250591 1966 - . gene_id "HERV4_19q13.43a"; transcript_id "HERV4_19q13.43a"; locus "HERV4_19q13.43a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0132"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "3951"; repStart "-596"; ### HERV4_19q13.43b ### chr19 rmsk gene 58251074 58253959 . - . gene_id "HERV4_19q13.43b"; transcript_id "HERV4_19q13.43b"; locus "HERV4_19q13.43b"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0133"; model_cov "2657"; model_pct "40.6"; chr19 rmsk exon 58251074 58252143 7249 - . gene_id "HERV4_19q13.43b"; transcript_id "HERV4_19q13.43b"; locus "HERV4_19q13.43b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0133"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "5179"; repStart "-275"; chr19 rmsk exon 58252139 58252808 5296 - . gene_id "HERV4_19q13.43b"; transcript_id "HERV4_19q13.43b"; locus "HERV4_19q13.43b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0133"; repClass "LTR"; repEnd "4096"; repFamily "ERV1"; repLeft "3075"; repStart "-2443"; chr19 rmsk exon 58253118 58253438 5296 - . gene_id "HERV4_19q13.43b"; transcript_id "HERV4_19q13.43b"; locus "HERV4_19q13.43b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0133"; repClass "LTR"; repEnd "-31"; repFamily "ERV1"; repLeft "-364"; repStart "-6570"; chr19 rmsk exon 58253740 58253959 5296 - . gene_id "HERV4_19q13.43b"; transcript_id "HERV4_19q13.43b"; locus "HERV4_19q13.43b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0133"; repClass "LTR"; repEnd "-365"; repFamily "ERV1"; repLeft "-583"; repStart "-6904"; ### HML6_19q13.43b ### chr19 rmsk gene 58305671 58315267 . + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0095"; model_cov "7167"; model_pct "99.5"; chr19 rmsk exon 58305671 58306101 2296 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 58306118 58306453 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "381"; repFamily "ERVK"; repLeft "-6821"; repStart "28"; chr19 rmsk exon 58306515 58307228 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "1133"; repFamily "ERVK"; repLeft "-6069"; repStart "382"; chr19 rmsk exon 58307323 58310256 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "4231"; repFamily "ERVK"; repLeft "-2971"; repStart "1134"; chr19 rmsk exon 58311249 58313278 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "6280"; repFamily "ERVK"; repLeft "-922"; repStart "4232"; chr19 rmsk exon 58313591 58314344 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "7026"; repFamily "ERVK"; repLeft "-176"; repStart "6281"; chr19 rmsk exon 58314651 58314839 35330 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "7027"; chr19 rmsk exon 58314840 58315267 2194 + . gene_id "HML6_19q13.43b"; transcript_id "HML6_19q13.43b"; locus "HML6_19q13.43b"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0095"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "-4"; ### HERVH_20p13a ### chr20 rmsk gene 172772 178853 . + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1183"; model_cov "5473"; model_pct "71.0"; chr20 rmsk exon 172772 173223 3377 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr20 rmsk exon 173227 174782 6525 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "1855"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chr20 rmsk exon 174783 175635 5393 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "2142"; chr20 rmsk exon 175630 175778 855 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr20 rmsk exon 175769 176275 3245 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr20 rmsk exon 176278 176457 1261 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "-3046"; repStart "4488"; chr20 rmsk exon 176454 178405 13651 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "5769"; chr20 rmsk exon 178406 178853 3320 + . gene_id "HERVH_20p13a"; transcript_id "HERVH_20p13a"; locus "HERVH_20p13a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1183"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVW_20p13 ### chr20 rmsk gene 190692 194167 . - . gene_id "HERVW_20p13"; transcript_id "HERVW_20p13"; locus "HERVW_20p13"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0294"; model_cov "3158"; model_pct "36.6"; chr20 rmsk exon 190692 191017 2638 - . gene_id "HERVW_20p13"; transcript_id "HERVW_20p13"; locus "HERVW_20p13"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0294"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr20 rmsk exon 191018 191309 2313 - . gene_id "HERVW_20p13"; transcript_id "HERVW_20p13"; locus "HERVW_20p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0294"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr20 rmsk exon 191300 191338 285 - . gene_id "HERVW_20p13"; transcript_id "HERVW_20p13"; locus "HERVW_20p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0294"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr20 rmsk exon 191332 194167 22620 - . gene_id "HERVW_20p13"; transcript_id "HERVW_20p13"; locus "HERVW_20p13"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0294"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "3190"; repStart "-2607"; ### HML5_20p13 ### chr20 rmsk gene 467862 472902 . - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0125"; model_cov "4016"; model_pct "58.7"; chr20 rmsk exon 467862 468330 2920 - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0125"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr20 rmsk exon 468331 471446 22661 - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0125"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2332"; repStart "-1502"; chr20 rmsk exon 471445 471646 1418 - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0125"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "699"; repStart "-5932"; chr20 rmsk exon 471635 472434 5255 - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0125"; repClass "LTR"; repEnd "808"; repFamily "ERVK"; repLeft "1"; repStart "-6029"; chr20 rmsk exon 472435 472902 2893 - . gene_id "HML5_20p13"; transcript_id "HML5_20p13"; locus "HML5_20p13"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0125"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR19_20p13 ### chr20 rmsk gene 778881 784230 . + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; category "insert*"; intModel "LTR19-int"; locid "LTR19-int_0057"; model_cov "1900"; model_pct "34.0"; chr20 rmsk exon 778881 779339 5128 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; repClass "LTR"; repEnd "2546"; repFamily "ERV1"; repLeft "-3040"; repStart "2085"; chr20 rmsk exon 779636 779869 5128 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; repClass "LTR"; repEnd "2781"; repFamily "ERV1"; repLeft "-2805"; repStart "2547"; chr20 rmsk exon 779869 780360 10991 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; prev_strand "-"; repClass "LTR"; repEnd "4257"; repFamily "ERV1"; repLeft "3753"; repStart "-1329"; chr20 rmsk exon 780669 781295 10991 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; prev_strand "-"; repClass "LTR"; repEnd "3752"; repFamily "ERV1"; repLeft "3096"; repStart "-1834"; chr20 rmsk exon 781589 781927 10991 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; prev_strand "-"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "2757"; repStart "-2491"; chr20 rmsk exon 782252 782607 8914 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; repClass "LTR"; repEnd "4742"; repFamily "ERV1"; repLeft "-844"; repStart "4380"; chr20 rmsk exon 782915 783751 8914 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0057"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "4743"; chr20 rmsk exon 783752 784230 3567 + . gene_id "LTR19_20p13"; transcript_id "LTR19_20p13"; locus "LTR19_20p13"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0057"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_20p13 ### chr20 rmsk gene 791798 800945 . + . gene_id "HERVIP10F_20p13"; transcript_id "HERVIP10F_20p13"; locus "HERVIP10F_20p13"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0115"; model_cov "7735"; model_pct "100.0"; chr20 rmsk exon 791798 792307 4033 + . gene_id "HERVIP10F_20p13"; transcript_id "HERVIP10F_20p13"; locus "HERVIP10F_20p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0115"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 792308 799151 64914 + . gene_id "HERVIP10F_20p13"; transcript_id "HERVIP10F_20p13"; locus "HERVIP10F_20p13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0115"; repClass "LTR"; repEnd "6814"; repFamily "ERV1"; repLeft "-923"; repStart "1"; chr20 rmsk exon 799462 800388 64914 + . gene_id "HERVIP10F_20p13"; transcript_id "HERVIP10F_20p13"; locus "HERVIP10F_20p13"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0115"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "6815"; chr20 rmsk exon 800389 800945 3736 + . gene_id "HERVIP10F_20p13"; transcript_id "HERVIP10F_20p13"; locus "HERVIP10F_20p13"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0115"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_20p13a ### chr20 rmsk gene 802729 810435 . + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0766"; model_cov "6406"; model_pct "97.1"; chr20 rmsk exon 802729 803311 5054 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0766"; repClass "LTR"; repEnd "614"; repFamily "ERV1"; repLeft "-5984"; repStart "29"; chr20 rmsk exon 804432 804639 16791 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0766"; repClass "LTR"; repEnd "1086"; repFamily "ERV1"; repLeft "-5512"; repStart "775"; chr20 rmsk exon 804852 807226 16791 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0766"; repClass "LTR"; repEnd "4666"; repFamily "ERV1"; repLeft "-1932"; repStart "1087"; chr20 rmsk exon 807534 807551 16791 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0766"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "-1931"; repStart "4667"; chr20 rmsk exon 807851 809815 16791 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0766"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4667"; chr20 rmsk exon 809817 810435 3154 + . gene_id "MER4_20p13a"; transcript_id "MER4_20p13a"; locus "MER4_20p13a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0766"; repClass "LTR"; repEnd "651"; repFamily "ERV1"; repLeft "-13"; repStart "1"; ### HERVH_20p13b ### chr20 rmsk gene 896877 901599 . + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1184"; model_cov "3518"; model_pct "45.6"; chr20 rmsk exon 896877 897229 1747 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 897230 897637 1087 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "-7267"; repStart "1"; chr20 rmsk exon 897725 898335 7996 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "-6293"; repStart "808"; chr20 rmsk exon 898379 899251 7996 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "-5416"; repStart "1421"; chr20 rmsk exon 899553 899631 7996 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-5345"; repStart "2298"; chr20 rmsk exon 899632 899958 2050 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "3019"; repFamily "ERV1"; repLeft "-4694"; repStart "2697"; chr20 rmsk exon 899948 900142 1209 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "-3184"; repStart "4335"; chr20 rmsk exon 900143 900599 3272 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "-765"; repStart "6489"; chr20 rmsk exon 900654 901225 3322 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr20 rmsk exon 901226 901599 2199 + . gene_id "HERVH_20p13b"; transcript_id "HERVH_20p13b"; locus "HERVH_20p13b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1184"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_20p13 ### chr20 rmsk gene 925951 928910 . - . gene_id "PRIMA41_20p13"; transcript_id "PRIMA41_20p13"; locus "PRIMA41_20p13"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0151"; model_cov "1152"; model_pct "14.9"; chr20 rmsk exon 925951 926488 3245 - . gene_id "PRIMA41_20p13"; transcript_id "PRIMA41_20p13"; locus "PRIMA41_20p13"; repName "MER41D"; geneRegion "ltr"; locid "PRIMA41-int_0151"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chr20 rmsk exon 926722 927495 2603 - . gene_id "PRIMA41_20p13"; transcript_id "PRIMA41_20p13"; locus "PRIMA41_20p13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0151"; repClass "LTR"; repEnd "7496"; repFamily "ERV1"; repLeft "6705"; repStart "-260"; chr20 rmsk exon 928279 928400 2603 - . gene_id "PRIMA41_20p13"; transcript_id "PRIMA41_20p13"; locus "PRIMA41_20p13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0151"; repClass "LTR"; repEnd "6704"; repFamily "ERV1"; repLeft "6600"; repStart "-1052"; chr20 rmsk exon 928652 928910 934 - . gene_id "PRIMA41_20p13"; transcript_id "PRIMA41_20p13"; locus "PRIMA41_20p13"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0151"; repClass "LTR"; repEnd "6253"; repFamily "ERV1"; repLeft "5996"; repStart "-1503"; ### MER4_20p13b ### chr20 rmsk gene 930663 933696 . - . gene_id "MER4_20p13b"; transcript_id "MER4_20p13b"; locus "MER4_20p13b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0768"; model_cov "2587"; model_pct "39.2"; chr20 rmsk exon 930663 931933 2711 - . gene_id "MER4_20p13b"; transcript_id "MER4_20p13b"; locus "MER4_20p13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0768"; repClass "LTR"; repEnd "4017"; repFamily "ERV1"; repLeft "1720"; repStart "-2581"; chr20 rmsk exon 932440 932573 802 - . gene_id "MER4_20p13b"; transcript_id "MER4_20p13b"; locus "MER4_20p13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0768"; repClass "LTR"; repEnd "118"; repFamily "ERV1"; repLeft "-16"; repStart "-6480"; chr20 rmsk exon 932564 932627 378 - . gene_id "MER4_20p13b"; transcript_id "MER4_20p13b"; locus "MER4_20p13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0768"; repClass "LTR"; repEnd "6030"; repFamily "ERV1"; repLeft "5968"; repStart "-568"; chr20 rmsk exon 933596 933696 302 - . gene_id "MER4_20p13b"; transcript_id "MER4_20p13b"; locus "MER4_20p13b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0768"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "653"; repStart "-5851"; ### HERVL_20p13 ### chr20 rmsk gene 1156900 1158193 . - . gene_id "HERVL_20p13"; transcript_id "HERVL_20p13"; locus "HERVL_20p13"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1215"; model_cov "855"; model_pct "15.1"; chr20 rmsk exon 1156900 1157337 3020 - . gene_id "HERVL_20p13"; transcript_id "HERVL_20p13"; locus "HERVL_20p13"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1215"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr20 rmsk exon 1157339 1158193 6952 - . gene_id "HERVL_20p13"; transcript_id "HERVL_20p13"; locus "HERVL_20p13"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1215"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "4798"; repStart "-1"; ### HML6_20p13 ### chr20 rmsk gene 1396802 1402704 . + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0096"; model_cov "4705"; model_pct "65.3"; chr20 rmsk exon 1396802 1397226 2838 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "-3"; repStart "1"; chr20 rmsk exon 1397276 1399823 13104 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "2620"; repFamily "ERVK"; repLeft "-4582"; repStart "2"; chr20 rmsk exon 1399823 1399939 417 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "6498"; repFamily "ERVK"; repLeft "-704"; repStart "6402"; chr20 rmsk exon 1399936 1400278 2713 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "-2936"; repStart "3924"; chr20 rmsk exon 1400278 1400945 4678 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1885"; repStart "4644"; chr20 rmsk exon 1400941 1401015 7098 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "6279"; repFamily "ERVK"; repLeft "-923"; repStart "6223"; chr20 rmsk exon 1401326 1402259 7098 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "6280"; chr20 rmsk exon 1402261 1402704 3007 + . gene_id "HML6_20p13"; transcript_id "HML6_20p13"; locus "HML6_20p13"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0096"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "-40"; repStart "1"; ### HERVL74_20p13a ### chr20 rmsk gene 1581915 1582500 . + . gene_id "HERVL74_20p13a"; transcript_id "HERVL74_20p13a"; locus "HERVL74_20p13a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0125"; model_cov "650"; model_pct "11.4"; chr20 rmsk exon 1581915 1582303 820 + . gene_id "HERVL74_20p13a"; transcript_id "HERVL74_20p13a"; locus "HERVL74_20p13a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0125"; repClass "LTR"; repEnd "2450"; repFamily "ERVL"; repLeft "-3235"; repStart "1997"; chr20 rmsk exon 1582308 1582432 506 + . gene_id "HERVL74_20p13a"; transcript_id "HERVL74_20p13a"; locus "HERVL74_20p13a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0125"; repClass "LTR"; repEnd "3650"; repFamily "ERVL"; repLeft "-2035"; repStart "3530"; chr20 rmsk exon 1582423 1582500 365 + . gene_id "HERVL74_20p13a"; transcript_id "HERVL74_20p13a"; locus "HERVL74_20p13a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0125"; repClass "LTR"; repEnd "3984"; repFamily "ERVL"; repLeft "-1701"; repStart "3907"; ### HERVL74_20p13b ### chr20 rmsk gene 1614969 1615561 . + . gene_id "HERVL74_20p13b"; transcript_id "HERVL74_20p13b"; locus "HERVL74_20p13b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0126"; model_cov "652"; model_pct "11.5"; chr20 rmsk exon 1614969 1615367 874 + . gene_id "HERVL74_20p13b"; transcript_id "HERVL74_20p13b"; locus "HERVL74_20p13b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0126"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3233"; repStart "1997"; chr20 rmsk exon 1615366 1615480 514 + . gene_id "HERVL74_20p13b"; transcript_id "HERVL74_20p13b"; locus "HERVL74_20p13b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0126"; repClass "LTR"; repEnd "3640"; repFamily "ERVL"; repLeft "-2045"; repStart "3526"; chr20 rmsk exon 1615482 1615561 296 + . gene_id "HERVL74_20p13b"; transcript_id "HERVL74_20p13b"; locus "HERVL74_20p13b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0126"; repClass "LTR"; repEnd "3984"; repFamily "ERVL"; repLeft "-1701"; repStart "3901"; ### HERVL74_20p13c ### chr20 rmsk gene 1701239 1701829 . + . gene_id "HERVL74_20p13c"; transcript_id "HERVL74_20p13c"; locus "HERVL74_20p13c"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0129"; model_cov "727"; model_pct "12.8"; chr20 rmsk exon 1701239 1701647 996 + . gene_id "HERVL74_20p13c"; transcript_id "HERVL74_20p13c"; locus "HERVL74_20p13c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0129"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3234"; repStart "1906"; chr20 rmsk exon 1701650 1701763 565 + . gene_id "HERVL74_20p13c"; transcript_id "HERVL74_20p13c"; locus "HERVL74_20p13c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0129"; repClass "LTR"; repEnd "3641"; repFamily "ERVL"; repLeft "-2044"; repStart "3529"; chr20 rmsk exon 1701765 1701829 367 + . gene_id "HERVL74_20p13c"; transcript_id "HERVL74_20p13c"; locus "HERVL74_20p13c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0129"; repClass "LTR"; repEnd "3971"; repFamily "ERVL"; repLeft "-1714"; repStart "3901"; ### HERVH_20p13c ### chr20 rmsk gene 1727239 1733570 . - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1185"; model_cov "5614"; model_pct "72.8"; chr20 rmsk exon 1727239 1727651 2302 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 1727652 1728211 3807 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chr20 rmsk exon 1728205 1728472 1652 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5747"; repStart "-1697"; chr20 rmsk exon 1728473 1729633 6298 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "4910"; repFamily "ERV1"; repLeft "3811"; repStart "-2803"; chr20 rmsk exon 1729633 1730079 2741 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "3140"; repStart "-4127"; chr20 rmsk exon 1730059 1733137 9636 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "4304"; repFamily "ERV1"; repLeft "1060"; repStart "-3409"; chr20 rmsk exon 1733138 1733570 2536 - . gene_id "HERVH_20p13c"; transcript_id "HERVH_20p13c"; locus "HERVH_20p13c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1185"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_20p13a ### chr20 rmsk gene 2044140 2046531 . + . gene_id "ERVLE_20p13a"; transcript_id "ERVLE_20p13a"; locus "ERVLE_20p13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3464"; model_cov "2126"; model_pct "37.5"; chr20 rmsk exon 2044140 2045392 2453 + . gene_id "ERVLE_20p13a"; transcript_id "ERVLE_20p13a"; locus "ERVLE_20p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3464"; repClass "LTR"; repEnd "1284"; repFamily "ERVL"; repLeft "-4383"; repStart "14"; chr20 rmsk exon 2045402 2045827 1792 + . gene_id "ERVLE_20p13a"; transcript_id "ERVLE_20p13a"; locus "ERVLE_20p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3464"; repClass "LTR"; repEnd "5215"; repFamily "ERVL"; repLeft "-452"; repStart "4794"; chr20 rmsk exon 2046109 2046531 1792 + . gene_id "ERVLE_20p13a"; transcript_id "ERVLE_20p13a"; locus "ERVLE_20p13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3464"; repClass "LTR"; repEnd "5651"; repFamily "ERVL"; repLeft "-16"; repStart "5216"; ### ERV316A3_20p13 ### chr20 rmsk gene 2342170 2342930 . + . gene_id "ERV316A3_20p13"; transcript_id "ERV316A3_20p13"; locus "ERV316A3_20p13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2645"; model_cov "763"; model_pct "14.6"; chr20 rmsk exon 2342170 2342930 2684 + . gene_id "ERV316A3_20p13"; transcript_id "ERV316A3_20p13"; locus "ERV316A3_20p13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2645"; repClass "LTR"; repEnd "1305"; repFamily "ERVL"; repLeft "-3921"; repStart "542"; ### HERVL40_20p13 ### chr20 rmsk gene 2672035 2679386 . + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0433"; model_cov "3373"; model_pct "61.0"; chr20 rmsk exon 2672035 2672358 1177 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-13"; repStart "108"; chr20 rmsk exon 2672380 2672479 387 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "106"; repFamily "ERVL"; repLeft "-5424"; repStart "1"; chr20 rmsk exon 2672654 2672809 475 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "1082"; repFamily "ERVL"; repLeft "-4448"; repStart "917"; chr20 rmsk exon 2673233 2673334 395 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "1381"; repFamily "ERVL"; repLeft "-4149"; repStart "1279"; chr20 rmsk exon 2673594 2673815 598 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "1606"; repFamily "ERVL"; repLeft "-3924"; repStart "1377"; chr20 rmsk exon 2675553 2675929 9005 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "3126"; repFamily "ERVL"; repLeft "-2404"; repStart "2740"; chr20 rmsk exon 2676241 2676645 9005 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "3526"; repFamily "ERVL"; repLeft "-2004"; repStart "3127"; chr20 rmsk exon 2676940 2678932 9005 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "5514"; repFamily "ERVL"; repLeft "-16"; repStart "3527"; chr20 rmsk exon 2678981 2679386 1708 + . gene_id "HERVL40_20p13"; transcript_id "HERVL40_20p13"; locus "HERVL40_20p13"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0433"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-13"; repStart "39"; ### ERVLE_20p13b ### chr20 rmsk gene 2848432 2849733 . - . gene_id "ERVLE_20p13b"; transcript_id "ERVLE_20p13b"; locus "ERVLE_20p13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3465"; model_cov "980"; model_pct "17.3"; chr20 rmsk exon 2848432 2848968 1873 - . gene_id "ERVLE_20p13b"; transcript_id "ERVLE_20p13b"; locus "ERVLE_20p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3465"; repClass "LTR"; repEnd "4732"; repFamily "ERVL"; repLeft "4157"; repStart "-935"; chr20 rmsk exon 2849028 2849297 822 - . gene_id "ERVLE_20p13b"; transcript_id "ERVLE_20p13b"; locus "ERVLE_20p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3465"; repClass "LTR"; repEnd "685"; repFamily "ERVL"; repLeft "401"; repStart "-4982"; chr20 rmsk exon 2849597 2849733 822 - . gene_id "ERVLE_20p13b"; transcript_id "ERVLE_20p13b"; locus "ERVLE_20p13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3465"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "279"; repStart "-5267"; ### ERVLE_20p13c ### chr20 rmsk gene 2991804 2994314 . - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3466"; model_cov "1220"; model_pct "21.5"; chr20 rmsk exon 2991804 2991847 252 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "3947"; repFamily "ERVL"; repLeft "3902"; repStart "-1720"; chr20 rmsk exon 2991924 2992087 270 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "3723"; repFamily "ERVL"; repLeft "3559"; repStart "-1944"; chr20 rmsk exon 2992149 2992239 472 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "3420"; repFamily "ERVL"; repLeft "3346"; repStart "-2247"; chr20 rmsk exon 2992542 2992636 472 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "3345"; repFamily "ERVL"; repLeft "3251"; repStart "-2322"; chr20 rmsk exon 2993145 2993352 674 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "2762"; repStart "-2705"; chr20 rmsk exon 2993379 2993652 453 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "2701"; repFamily "ERVL"; repLeft "2386"; repStart "-2966"; chr20 rmsk exon 2993995 2994314 656 - . gene_id "ERVLE_20p13c"; transcript_id "ERVLE_20p13c"; locus "ERVLE_20p13c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3466"; repClass "LTR"; repEnd "2009"; repFamily "ERVL"; repLeft "1681"; repStart "-3658"; ### ERVLE_20p13d ### chr20 rmsk gene 4541468 4542913 . - . gene_id "ERVLE_20p13d"; transcript_id "ERVLE_20p13d"; locus "ERVLE_20p13d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3468"; model_cov "1410"; model_pct "24.9"; chr20 rmsk exon 4541468 4541777 538 - . gene_id "ERVLE_20p13d"; transcript_id "ERVLE_20p13d"; locus "ERVLE_20p13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3468"; repClass "LTR"; repEnd "4553"; repFamily "ERVL"; repLeft "4224"; repStart "-1114"; chr20 rmsk exon 4541868 4542913 1564 - . gene_id "ERVLE_20p13d"; transcript_id "ERVLE_20p13d"; locus "ERVLE_20p13d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3468"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "2987"; repStart "-1599"; ### MER41_20p12.3 ### chr20 rmsk gene 5180317 5181533 . - . gene_id "MER41_20p12.3"; transcript_id "MER41_20p12.3"; locus "MER41_20p12.3"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0526"; model_cov "637"; model_pct "10.7"; chr20 rmsk exon 5180317 5180772 3334 - . gene_id "MER41_20p12.3"; transcript_id "MER41_20p12.3"; locus "MER41_20p12.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0526"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr20 rmsk exon 5180773 5181313 3720 - . gene_id "MER41_20p12.3"; transcript_id "MER41_20p12.3"; locus "MER41_20p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0526"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5394"; repStart "-2"; chr20 rmsk exon 5181295 5181380 669 - . gene_id "MER41_20p12.3"; transcript_id "MER41_20p12.3"; locus "MER41_20p12.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0526"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chr20 rmsk exon 5181381 5181533 1002 - . gene_id "MER41_20p12.3"; transcript_id "MER41_20p12.3"; locus "MER41_20p12.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0526"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "402"; repStart "0"; ### HML3_20p12.3 ### chr20 rmsk gene 5303843 5308712 . + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0229"; model_cov "4325"; model_pct "71.8"; chr20 rmsk exon 5303843 5303883 274 + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0229"; repClass "LTR"; repEnd "40"; repFamily "ERVK"; repLeft "-473"; repStart "1"; chr20 rmsk exon 5303885 5306525 22577 + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0229"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "142"; chr20 rmsk exon 5306526 5306756 1940 + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0229"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3723"; chr20 rmsk exon 5306743 5308179 11871 + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0229"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chr20 rmsk exon 5308180 5308712 4226 + . gene_id "HML3_20p12.3"; transcript_id "HML3_20p12.3"; locus "HML3_20p12.3"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0229"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4B_20p12.3 ### chr20 rmsk gene 5330559 5332056 . - . gene_id "MER4B_20p12.3"; transcript_id "MER4B_20p12.3"; locus "MER4B_20p12.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0456"; model_cov "997"; model_pct "14.8"; chr20 rmsk exon 5330559 5331402 2742 - . gene_id "MER4B_20p12.3"; transcript_id "MER4B_20p12.3"; locus "MER4B_20p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0456"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "5939"; repStart "-1"; chr20 rmsk exon 5331405 5331477 475 - . gene_id "MER4B_20p12.3"; transcript_id "MER4B_20p12.3"; locus "MER4B_20p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0456"; repClass "LTR"; repEnd "5371"; repFamily "ERV1"; repLeft "5279"; repStart "-1387"; chr20 rmsk exon 5331806 5331862 475 - . gene_id "MER4B_20p12.3"; transcript_id "MER4B_20p12.3"; locus "MER4B_20p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0456"; repClass "LTR"; repEnd "5278"; repFamily "ERV1"; repLeft "5260"; repStart "-1480"; chr20 rmsk exon 5331986 5332056 475 - . gene_id "MER4B_20p12.3"; transcript_id "MER4B_20p12.3"; locus "MER4B_20p12.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0456"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "5190"; repStart "-1499"; ### HERV4_20p12.3 ### chr20 rmsk gene 5481092 5482459 . - . gene_id "HERV4_20p12.3"; transcript_id "HERV4_20p12.3"; locus "HERV4_20p12.3"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0134"; model_cov "830"; model_pct "12.7"; chr20 rmsk exon 5481092 5481475 1296 - . gene_id "HERV4_20p12.3"; transcript_id "HERV4_20p12.3"; locus "HERV4_20p12.3"; repName "MER51E"; geneRegion "ltr"; locid "HERV4_I-int_0134"; repClass "LTR"; repEnd "475"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chr20 rmsk exon 5481477 5481608 661 - . gene_id "HERV4_20p12.3"; transcript_id "HERV4_20p12.3"; locus "HERV4_20p12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0134"; repClass "LTR"; repEnd "6537"; repFamily "ERV1"; repLeft "6406"; repStart "-2"; chr20 rmsk exon 5481792 5482459 4973 - . gene_id "HERV4_20p12.3"; transcript_id "HERV4_20p12.3"; locus "HERV4_20p12.3"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0134"; repClass "LTR"; repEnd "6079"; repFamily "ERV1"; repLeft "5380"; repStart "-460"; ### ERVLE_20p12.3a ### chr20 rmsk gene 5488280 5490856 . - . gene_id "ERVLE_20p12.3a"; transcript_id "ERVLE_20p12.3a"; locus "ERVLE_20p12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3469"; model_cov "2375"; model_pct "41.9"; chr20 rmsk exon 5488280 5488992 1952 - . gene_id "ERVLE_20p12.3a"; transcript_id "ERVLE_20p12.3a"; locus "ERVLE_20p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3469"; repClass "LTR"; repEnd "5228"; repFamily "ERVL"; repLeft "4478"; repStart "-439"; chr20 rmsk exon 5488994 5489124 557 - . gene_id "ERVLE_20p12.3a"; transcript_id "ERVLE_20p12.3a"; locus "ERVLE_20p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3469"; repClass "LTR"; repEnd "4460"; repFamily "ERVL"; repLeft "4325"; repStart "-1207"; chr20 rmsk exon 5489119 5490085 3677 - . gene_id "ERVLE_20p12.3a"; transcript_id "ERVLE_20p12.3a"; locus "ERVLE_20p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3469"; repClass "LTR"; repEnd "3979"; repFamily "ERVL"; repLeft "2961"; repStart "-1688"; chr20 rmsk exon 5490396 5490856 3677 - . gene_id "ERVLE_20p12.3a"; transcript_id "ERVLE_20p12.3a"; locus "ERVLE_20p12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3469"; repClass "LTR"; repEnd "2625"; repFamily "ERVL"; repLeft "2153"; repStart "-3042"; ### HERVFRD_20p12.3 ### chr20 rmsk gene 5519539 5522808 . + . gene_id "HERVFRD_20p12.3"; transcript_id "HERVFRD_20p12.3"; locus "HERVFRD_20p12.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0177"; model_cov "2267"; model_pct "31.5"; chr20 rmsk exon 5519539 5520497 15032 + . gene_id "HERVFRD_20p12.3"; transcript_id "HERVFRD_20p12.3"; locus "HERVFRD_20p12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0177"; repClass "LTR"; repEnd "5896"; repFamily "ERV1"; repLeft "-1309"; repStart "4929"; chr20 rmsk exon 5520804 5522105 15032 + . gene_id "HERVFRD_20p12.3"; transcript_id "HERVFRD_20p12.3"; locus "HERVFRD_20p12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0177"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "5897"; chr20 rmsk exon 5522106 5522808 4407 + . gene_id "HERVFRD_20p12.3"; transcript_id "HERVFRD_20p12.3"; locus "HERVFRD_20p12.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0177"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### ERVLE_20p12.3b ### chr20 rmsk gene 7092291 7095406 . + . gene_id "ERVLE_20p12.3b"; transcript_id "ERVLE_20p12.3b"; locus "ERVLE_20p12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3472"; model_cov "1916"; model_pct "33.8"; chr20 rmsk exon 7092291 7092868 1129 + . gene_id "ERVLE_20p12.3b"; transcript_id "ERVLE_20p12.3b"; locus "ERVLE_20p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3472"; repClass "LTR"; repEnd "997"; repFamily "ERVL"; repLeft "-4670"; repStart "412"; chr20 rmsk exon 7092876 7093180 1282 + . gene_id "ERVLE_20p12.3b"; transcript_id "ERVLE_20p12.3b"; locus "ERVLE_20p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3472"; repClass "LTR"; repEnd "3944"; repFamily "ERVL"; repLeft "-1723"; repStart "3639"; chr20 rmsk exon 7093412 7093576 741 + . gene_id "ERVLE_20p12.3b"; transcript_id "ERVLE_20p12.3b"; locus "ERVLE_20p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3472"; repClass "LTR"; repEnd "4162"; repFamily "ERVL"; repLeft "-1505"; repStart "3990"; chr20 rmsk exon 7094544 7095406 2765 + . gene_id "ERVLE_20p12.3b"; transcript_id "ERVLE_20p12.3b"; locus "ERVLE_20p12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3472"; repClass "LTR"; repEnd "5011"; repFamily "ERVL"; repLeft "-656"; repStart "4157"; ### ERVLE_20p12.3c ### chr20 rmsk gene 7236342 7237409 . + . gene_id "ERVLE_20p12.3c"; transcript_id "ERVLE_20p12.3c"; locus "ERVLE_20p12.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3473"; model_cov "1051"; model_pct "18.5"; chr20 rmsk exon 7236342 7236971 1784 + . gene_id "ERVLE_20p12.3c"; transcript_id "ERVLE_20p12.3c"; locus "ERVLE_20p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3473"; repClass "LTR"; repEnd "3675"; repFamily "ERVL"; repLeft "-1992"; repStart "3030"; chr20 rmsk exon 7237005 7237409 917 + . gene_id "ERVLE_20p12.3c"; transcript_id "ERVLE_20p12.3c"; locus "ERVLE_20p12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3473"; repClass "LTR"; repEnd "5089"; repFamily "ERVL"; repLeft "-578"; repStart "4683"; ### ERVLB4_20p12.3a ### chr20 rmsk gene 7377069 7387024 . - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1689"; model_cov "5651"; model_pct "98.9"; chr20 rmsk exon 7377069 7377109 262 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "516"; repStart "0"; chr20 rmsk exon 7377290 7377731 1513 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "37"; repStart "-41"; chr20 rmsk exon 7377734 7377781 268 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5665"; repStart "-2"; chr20 rmsk exon 7378403 7380397 24602 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "5669"; repFamily "ERVL"; repLeft "3632"; repStart "-45"; chr20 rmsk exon 7380767 7381108 24602 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "3631"; repFamily "ERVL"; repLeft "3289"; repStart "-2083"; chr20 rmsk exon 7381144 7382594 24602 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "3288"; repFamily "ERVL"; repLeft "1816"; repStart "-2426"; chr20 rmsk exon 7383011 7383595 24602 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "1815"; repFamily "ERVL"; repLeft "1275"; repStart "-3899"; chr20 rmsk exon 7384090 7384687 24602 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "1274"; repFamily "ERVL"; repLeft "701"; repStart "-4440"; chr20 rmsk exon 7385955 7386581 3371 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "641"; repFamily "ERVL"; repLeft "1"; repStart "-5073"; chr20 rmsk exon 7386620 7387024 1632 - . gene_id "ERVLB4_20p12.3a"; transcript_id "ERVLB4_20p12.3a"; locus "ERVLB4_20p12.3a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1689"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "1"; repStart "-175"; ### ERVLB4_20p12.3b ### chr20 rmsk gene 7577898 7583890 . - . gene_id "ERVLB4_20p12.3b"; transcript_id "ERVLB4_20p12.3b"; locus "ERVLB4_20p12.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1691"; model_cov "5385"; model_pct "94.2"; chr20 rmsk exon 7577898 7580053 11183 - . gene_id "ERVLB4_20p12.3b"; transcript_id "ERVLB4_20p12.3b"; locus "ERVLB4_20p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1691"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3565"; repStart "0"; chr20 rmsk exon 7580049 7583199 11931 - . gene_id "ERVLB4_20p12.3b"; transcript_id "ERVLB4_20p12.3b"; locus "ERVLB4_20p12.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1691"; repClass "LTR"; repEnd "3237"; repFamily "ERVL"; repLeft "1"; repStart "-2477"; chr20 rmsk exon 7583325 7583890 1828 - . gene_id "ERVLB4_20p12.3b"; transcript_id "ERVLB4_20p12.3b"; locus "ERVLB4_20p12.3b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1691"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "-8"; repStart "-46"; ### PABLB_20p12.3 ### chr20 rmsk gene 7740519 7743108 . - . gene_id "PABLB_20p12.3"; transcript_id "PABLB_20p12.3"; locus "PABLB_20p12.3"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0100"; model_cov "1340"; model_pct "18.8"; chr20 rmsk exon 7740519 7741034 1020 - . gene_id "PABLB_20p12.3"; transcript_id "PABLB_20p12.3"; locus "PABLB_20p12.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0100"; repClass "LTR"; repEnd "3089"; repFamily "ERV1"; repLeft "2571"; repStart "-4033"; chr20 rmsk exon 7742275 7743108 673 - . gene_id "PABLB_20p12.3"; transcript_id "PABLB_20p12.3"; locus "PABLB_20p12.3"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0100"; repClass "LTR"; repEnd "1738"; repFamily "ERV1"; repLeft "916"; repStart "-5384"; ### HUERSP1_20p12.3 ### chr20 rmsk gene 7743299 7744288 . - . gene_id "HUERSP1_20p12.3"; transcript_id "HUERSP1_20p12.3"; locus "HUERSP1_20p12.3"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0200"; model_cov "1195"; model_pct "19.1"; chr20 rmsk exon 7743299 7744013 1354 - . gene_id "HUERSP1_20p12.3"; transcript_id "HUERSP1_20p12.3"; locus "HUERSP1_20p12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0200"; repClass "LTR"; repEnd "1195"; repFamily "ERV1"; repLeft "122"; repStart "-5068"; chr20 rmsk exon 7744171 7744288 312 - . gene_id "HUERSP1_20p12.3"; transcript_id "HUERSP1_20p12.3"; locus "HUERSP1_20p12.3"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0200"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "25"; repStart "-6116"; ### ERVLB4_20p12.3c ### chr20 rmsk gene 8836313 8839500 . + . gene_id "ERVLB4_20p12.3c"; transcript_id "ERVLB4_20p12.3c"; locus "ERVLB4_20p12.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1692"; model_cov "3150"; model_pct "55.1"; chr20 rmsk exon 8836313 8836372 315 + . gene_id "ERVLB4_20p12.3c"; transcript_id "ERVLB4_20p12.3c"; locus "ERVLB4_20p12.3c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1692"; repClass "LTR"; repEnd "60"; repFamily "ERVL"; repLeft "-496"; repStart "1"; chr20 rmsk exon 8836475 8839500 14343 + . gene_id "ERVLB4_20p12.3c"; transcript_id "ERVLB4_20p12.3c"; locus "ERVLB4_20p12.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1692"; repClass "LTR"; repEnd "3155"; repFamily "ERVL"; repLeft "-2559"; repStart "5"; ### ERVLE_20p12.2a ### chr20 rmsk gene 9702686 9703768 . - . gene_id "ERVLE_20p12.2a"; transcript_id "ERVLE_20p12.2a"; locus "ERVLE_20p12.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3474"; model_cov "638"; model_pct "11.3"; chr20 rmsk exon 9702686 9703295 686 - . gene_id "ERVLE_20p12.2a"; transcript_id "ERVLE_20p12.2a"; locus "ERVLE_20p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3474"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "960"; repStart "-4087"; chr20 rmsk exon 9703742 9703768 686 - . gene_id "ERVLE_20p12.2a"; transcript_id "ERVLE_20p12.2a"; locus "ERVLE_20p12.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3474"; repClass "LTR"; repEnd "959"; repFamily "ERVL"; repLeft "941"; repStart "-4708"; ### ERVLE_20p12.2b ### chr20 rmsk gene 10566057 10568417 . - . gene_id "ERVLE_20p12.2b"; transcript_id "ERVLE_20p12.2b"; locus "ERVLE_20p12.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3475"; model_cov "1742"; model_pct "30.7"; chr20 rmsk exon 10566057 10566259 355 - . gene_id "ERVLE_20p12.2b"; transcript_id "ERVLE_20p12.2b"; locus "ERVLE_20p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3475"; repClass "LTR"; repEnd "5290"; repFamily "ERVL"; repLeft "5062"; repStart "-377"; chr20 rmsk exon 10566530 10567248 1770 - . gene_id "ERVLE_20p12.2b"; transcript_id "ERVLE_20p12.2b"; locus "ERVLE_20p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3475"; repClass "LTR"; repEnd "4704"; repFamily "ERVL"; repLeft "3941"; repStart "-963"; chr20 rmsk exon 10567624 10567952 1770 - . gene_id "ERVLE_20p12.2b"; transcript_id "ERVLE_20p12.2b"; locus "ERVLE_20p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3475"; repClass "LTR"; repEnd "3953"; repFamily "ERVL"; repLeft "3498"; repStart "-1714"; chr20 rmsk exon 10568125 10568417 387 - . gene_id "ERVLE_20p12.2b"; transcript_id "ERVLE_20p12.2b"; locus "ERVLE_20p12.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3475"; repClass "LTR"; repEnd "2787"; repFamily "ERVL"; repLeft "2491"; repStart "-2880"; ### ERVLE_20p12.2c ### chr20 rmsk gene 11098122 11100821 . - . gene_id "ERVLE_20p12.2c"; transcript_id "ERVLE_20p12.2c"; locus "ERVLE_20p12.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3477"; model_cov "2011"; model_pct "35.5"; chr20 rmsk exon 11098122 11099230 1876 - . gene_id "ERVLE_20p12.2c"; transcript_id "ERVLE_20p12.2c"; locus "ERVLE_20p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3477"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "4075"; repStart "-383"; chr20 rmsk exon 11099246 11099639 1051 - . gene_id "ERVLE_20p12.2c"; transcript_id "ERVLE_20p12.2c"; locus "ERVLE_20p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3477"; repClass "LTR"; repEnd "3258"; repFamily "ERVL"; repLeft "2854"; repStart "-2409"; chr20 rmsk exon 11100033 11100289 443 - . gene_id "ERVLE_20p12.2c"; transcript_id "ERVLE_20p12.2c"; locus "ERVLE_20p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3477"; repClass "LTR"; repEnd "2500"; repFamily "ERVL"; repLeft "2255"; repStart "-3167"; chr20 rmsk exon 11100675 11100821 311 - . gene_id "ERVLE_20p12.2c"; transcript_id "ERVLE_20p12.2c"; locus "ERVLE_20p12.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3477"; repClass "LTR"; repEnd "598"; repFamily "ERVL"; repLeft "445"; repStart "-5069"; ### ERVLE_20p12.2d ### chr20 rmsk gene 11671315 11672585 . + . gene_id "ERVLE_20p12.2d"; transcript_id "ERVLE_20p12.2d"; locus "ERVLE_20p12.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3478"; model_cov "1262"; model_pct "22.3"; chr20 rmsk exon 11671315 11672343 3490 + . gene_id "ERVLE_20p12.2d"; transcript_id "ERVLE_20p12.2d"; locus "ERVLE_20p12.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3478"; repClass "LTR"; repEnd "1016"; repFamily "ERVL"; repLeft "-4651"; repStart "2"; chr20 rmsk exon 11672343 11672585 951 + . gene_id "ERVLE_20p12.2d"; transcript_id "ERVLE_20p12.2d"; locus "ERVLE_20p12.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3478"; repClass "LTR"; repEnd "1793"; repFamily "ERVL"; repLeft "-3874"; repStart "1545"; ### ERVL_20p12.2 ### chr20 rmsk gene 11672591 11673893 . + . gene_id "ERVL_20p12.2"; transcript_id "ERVL_20p12.2"; locus "ERVL_20p12.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0442"; model_cov "1365"; model_pct "23.7"; chr20 rmsk exon 11672591 11673893 5308 + . gene_id "ERVL_20p12.2"; transcript_id "ERVL_20p12.2"; locus "ERVL_20p12.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0442"; repClass "LTR"; repEnd "5756"; repFamily "ERVL"; repLeft "-1"; repStart "4391"; ### HERVH_20p12.1a ### chr20 rmsk gene 12340267 12345939 . - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1186"; model_cov "4919"; model_pct "63.8"; chr20 rmsk exon 12340267 12340700 2743 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 12340701 12341084 2361 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr20 rmsk exon 12341082 12341299 1304 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr20 rmsk exon 12341301 12341963 4167 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr20 rmsk exon 12341964 12342467 3136 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "3492"; repStart "-3718"; chr20 rmsk exon 12342458 12342607 939 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr20 rmsk exon 12342587 12345505 16299 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr20 rmsk exon 12345506 12345939 2690 - . gene_id "HERVH_20p12.1a"; transcript_id "HERVH_20p12.1a"; locus "HERVH_20p12.1a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1186"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_20p12.1 ### chr20 rmsk gene 12603781 12606068 . - . gene_id "ERVLB4_20p12.1"; transcript_id "ERVLB4_20p12.1"; locus "ERVLB4_20p12.1"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1693"; model_cov "2179"; model_pct "38.1"; chr20 rmsk exon 12603781 12603981 1027 - . gene_id "ERVLB4_20p12.1"; transcript_id "ERVLB4_20p12.1"; locus "ERVLB4_20p12.1"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1693"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "296"; repStart "-50"; chr20 rmsk exon 12603985 12606068 12653 - . gene_id "ERVLB4_20p12.1"; transcript_id "ERVLB4_20p12.1"; locus "ERVLB4_20p12.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1693"; repClass "LTR"; repEnd "3466"; repFamily "ERVL"; repLeft "1287"; repStart "-2248"; ### HERVH_20p12.1b ### chr20 rmsk gene 12753820 12759634 . + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1187"; model_cov "4909"; model_pct "63.6"; chr20 rmsk exon 12753820 12754274 3412 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr20 rmsk exon 12754277 12757279 19392 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr20 rmsk exon 12757274 12757423 915 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr20 rmsk exon 12757414 12757917 2982 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr20 rmsk exon 12757920 12758580 4048 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr20 rmsk exon 12758582 12758801 1290 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr20 rmsk exon 12758799 12759179 2345 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7321"; chr20 rmsk exon 12759180 12759634 3466 + . gene_id "HERVH_20p12.1b"; transcript_id "HERVH_20p12.1b"; locus "HERVH_20p12.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1187"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_20p12.1c ### chr20 rmsk gene 13357880 13362689 . + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1188"; model_cov "3897"; model_pct "50.5"; chr20 rmsk exon 13357880 13358330 3658 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr20 rmsk exon 13358333 13359147 2910 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "767"; repFamily "ERV1"; repLeft "-6946"; repStart "1"; chr20 rmsk exon 13359143 13360366 8452 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1773"; chr20 rmsk exon 13360346 13360495 949 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr20 rmsk exon 13360486 13360987 3312 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr20 rmsk exon 13360990 13361640 4197 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr20 rmsk exon 13361642 13361860 1374 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr20 rmsk exon 13361859 13362225 2378 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "7700"; repFamily "ERV1"; repLeft "-13"; repStart "7322"; chr20 rmsk exon 13362239 13362689 3704 + . gene_id "HERVH_20p12.1c"; transcript_id "HERVH_20p12.1c"; locus "HERVH_20p12.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1188"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_20p12.1 ### chr20 rmsk gene 13951627 13953854 . + . gene_id "MER61_20p12.1"; transcript_id "MER61_20p12.1"; locus "MER61_20p12.1"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0362"; model_cov "1721"; model_pct "33.0"; chr20 rmsk exon 13951627 13952747 10763 + . gene_id "MER61_20p12.1"; transcript_id "MER61_20p12.1"; locus "MER61_20p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0362"; repClass "LTR"; repEnd "4632"; repFamily "ERV1"; repLeft "-585"; repStart "3495"; chr20 rmsk exon 13952970 13953518 10763 + . gene_id "MER61_20p12.1"; transcript_id "MER61_20p12.1"; locus "MER61_20p12.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0362"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4633"; chr20 rmsk exon 13953519 13953854 1711 + . gene_id "MER61_20p12.1"; transcript_id "MER61_20p12.1"; locus "MER61_20p12.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0362"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_20p12.1a ### chr20 rmsk gene 14622866 14627590 . + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2648"; model_cov "3144"; model_pct "60.2"; chr20 rmsk exon 14622866 14623178 1166 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "314"; repFamily "ERVL"; repLeft "-124"; repStart "1"; chr20 rmsk exon 14623309 14623774 1314 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "-3614"; repStart "1119"; chr20 rmsk exon 14623861 14624018 1160 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "2517"; repFamily "ERVL"; repLeft "-2709"; repStart "2345"; chr20 rmsk exon 14624057 14624471 1160 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "2975"; repFamily "ERVL"; repLeft "-2251"; repStart "2518"; chr20 rmsk exon 14624473 14624604 396 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "2823"; repFamily "ERVL"; repLeft "-2403"; repStart "2693"; chr20 rmsk exon 14624658 14625047 4161 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "3703"; repFamily "ERVL"; repLeft "-1523"; repStart "3282"; chr20 rmsk exon 14625352 14625817 4161 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "4230"; repFamily "ERVL"; repLeft "-996"; repStart "3704"; chr20 rmsk exon 14626124 14627100 4161 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4231"; chr20 rmsk exon 14627170 14627590 1492 + . gene_id "ERV316A3_20p12.1a"; transcript_id "ERV316A3_20p12.1a"; locus "ERV316A3_20p12.1a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2648"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "-13"; repStart "4"; ### HERVH_20p12.1d ### chr20 rmsk gene 15147695 15153502 . - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1189"; model_cov "5128"; model_pct "66.5"; chr20 rmsk exon 15147695 15148045 2072 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr20 rmsk exon 15148046 15148425 2415 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr20 rmsk exon 15148426 15148662 1279 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5588"; repStart "-1894"; chr20 rmsk exon 15148643 15149305 4271 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr20 rmsk exon 15149308 15150162 6294 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr20 rmsk exon 15150142 15153149 20297 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr20 rmsk exon 15153152 15153502 2044 - . gene_id "HERVH_20p12.1d"; transcript_id "HERVH_20p12.1d"; locus "HERVH_20p12.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1189"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HARLEQUIN_20p12.1 ### chr20 rmsk gene 15979869 15986246 . - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0169"; model_cov "5448"; model_pct "79.0"; chr20 rmsk exon 15979869 15980348 4113 - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0169"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 15980349 15983901 23688 - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0169"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "3352"; repStart "0"; chr20 rmsk exon 15983901 15984867 6707 - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0169"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr20 rmsk exon 15984853 15985766 6359 - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0169"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr20 rmsk exon 15985768 15986246 3996 - . gene_id "HARLEQUIN_20p12.1"; transcript_id "HARLEQUIN_20p12.1"; locus "HARLEQUIN_20p12.1"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0169"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### MER101_20p12.1a ### chr20 rmsk gene 16077836 16078950 . - . gene_id "MER101_20p12.1a"; transcript_id "MER101_20p12.1a"; locus "MER101_20p12.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0399"; model_cov "1068"; model_pct "16.1"; chr20 rmsk exon 16077836 16078723 3570 - . gene_id "MER101_20p12.1a"; transcript_id "MER101_20p12.1a"; locus "MER101_20p12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0399"; repClass "LTR"; repEnd "3648"; repFamily "ERV1"; repLeft "2756"; repStart "-2991"; chr20 rmsk exon 16078780 16078950 406 - . gene_id "MER101_20p12.1a"; transcript_id "MER101_20p12.1a"; locus "MER101_20p12.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0399"; repClass "LTR"; repEnd "415"; repFamily "ERV1"; repLeft "239"; repStart "-6224"; ### MER101_20p12.1b ### chr20 rmsk gene 16079303 16081336 . - . gene_id "MER101_20p12.1b"; transcript_id "MER101_20p12.1b"; locus "MER101_20p12.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0400"; model_cov "2112"; model_pct "31.8"; chr20 rmsk exon 16079303 16080573 3034 - . gene_id "MER101_20p12.1b"; transcript_id "MER101_20p12.1b"; locus "MER101_20p12.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0400"; repClass "LTR"; repEnd "4189"; repFamily "ERV1"; repLeft "2472"; repStart "-2450"; chr20 rmsk exon 16080928 16081336 1348 - . gene_id "MER101_20p12.1b"; transcript_id "MER101_20p12.1b"; locus "MER101_20p12.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0400"; repClass "LTR"; repEnd "2599"; repFamily "ERV1"; repLeft "2204"; repStart "-4040"; ### ERV316A3_20p12.1b ### chr20 rmsk gene 16861085 16861901 . + . gene_id "ERV316A3_20p12.1b"; transcript_id "ERV316A3_20p12.1b"; locus "ERV316A3_20p12.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2649"; model_cov "855"; model_pct "16.4"; chr20 rmsk exon 16861085 16861901 1805 + . gene_id "ERV316A3_20p12.1b"; transcript_id "ERV316A3_20p12.1b"; locus "ERV316A3_20p12.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2649"; repClass "LTR"; repEnd "3375"; repFamily "ERVL"; repLeft "-1851"; repStart "2520"; ### ERV316A3_20p12.1c ### chr20 rmsk gene 16861973 16864107 . + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2650"; model_cov "1400"; model_pct "26.8"; chr20 rmsk exon 16861973 16862072 440 + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2650"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-1894"; repStart "3233"; chr20 rmsk exon 16862109 16862422 730 + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2650"; repClass "LTR"; repEnd "3672"; repFamily "ERVL"; repLeft "-1554"; repStart "3184"; chr20 rmsk exon 16862403 16863007 1445 + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2650"; repClass "LTR"; repEnd "4846"; repFamily "ERVL"; repLeft "-380"; repStart "4240"; chr20 rmsk exon 16863671 16863883 1445 + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2650"; repClass "LTR"; repEnd "5054"; repFamily "ERVL"; repLeft "-172"; repStart "4847"; chr20 rmsk exon 16863934 16864107 574 + . gene_id "ERV316A3_20p12.1c"; transcript_id "ERV316A3_20p12.1c"; locus "ERV316A3_20p12.1c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2650"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-85"; repStart "194"; ### PRIMA4_20p12.1 ### chr20 rmsk gene 17068778 17069603 . + . gene_id "PRIMA4_20p12.1"; transcript_id "PRIMA4_20p12.1"; locus "PRIMA4_20p12.1"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0220"; model_cov "845"; model_pct "10.2"; chr20 rmsk exon 17068778 17069603 1295 + . gene_id "PRIMA4_20p12.1"; transcript_id "PRIMA4_20p12.1"; locus "PRIMA4_20p12.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0220"; repClass "LTR"; repEnd "6241"; repFamily "ERV1"; repLeft "-2029"; repStart "5396"; ### MER4_20p11.23 ### chr20 rmsk gene 18323419 18329534 . + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0769"; model_cov "4304"; model_pct "65.2"; chr20 rmsk exon 18323419 18323495 378 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0769"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "-374"; repStart "1"; chr20 rmsk exon 18323501 18324455 1567 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0769"; repClass "LTR"; repEnd "1125"; repFamily "ERV1"; repLeft "-5473"; repStart "263"; chr20 rmsk exon 18324459 18324687 15422 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0769"; repClass "LTR"; repEnd "3243"; repFamily "ERV1"; repLeft "-3355"; repStart "3149"; chr20 rmsk exon 18325342 18325838 15422 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0769"; repClass "LTR"; repEnd "3727"; repFamily "ERV1"; repLeft "-2871"; repStart "3244"; chr20 rmsk exon 18326140 18328996 15422 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0769"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "3728"; chr20 rmsk exon 18329122 18329534 2527 + . gene_id "MER4_20p11.23"; transcript_id "MER4_20p11.23"; locus "MER4_20p11.23"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0769"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_20p11.23a ### chr20 rmsk gene 18439079 18441376 . - . gene_id "ERVLE_20p11.23a"; transcript_id "ERVLE_20p11.23a"; locus "ERVLE_20p11.23a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3481"; model_cov "1917"; model_pct "33.8"; chr20 rmsk exon 18439079 18439514 1375 - . gene_id "ERVLE_20p11.23a"; transcript_id "ERVLE_20p11.23a"; locus "ERVLE_20p11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3481"; repClass "LTR"; repEnd "2001"; repFamily "ERVL"; repLeft "1555"; repStart "-3666"; chr20 rmsk exon 18439526 18439871 2897 - . gene_id "ERVLE_20p11.23a"; transcript_id "ERVLE_20p11.23a"; locus "ERVLE_20p11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3481"; repClass "LTR"; repEnd "1476"; repFamily "ERVL"; repLeft "1139"; repStart "-4191"; chr20 rmsk exon 18440255 18441376 2897 - . gene_id "ERVLE_20p11.23a"; transcript_id "ERVLE_20p11.23a"; locus "ERVLE_20p11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3481"; repClass "LTR"; repEnd "1138"; repFamily "ERVL"; repLeft "4"; repStart "-4529"; ### HERVH_20p11.23a ### chr20 rmsk gene 18517122 18522759 . - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1190"; model_cov "5645"; model_pct "73.2"; chr20 rmsk exon 18517122 18517551 3413 - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1190"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 18517552 18517983 2679 - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1190"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chr20 rmsk exon 18517987 18519936 7076 - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1190"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4199"; repStart "-1290"; chr20 rmsk exon 18519923 18522644 13747 - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1190"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr20 rmsk exon 18522645 18522759 798 - . gene_id "HERVH_20p11.23a"; transcript_id "HERVH_20p11.23a"; locus "HERVH_20p11.23a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1190"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "348"; repStart "0"; ### ERVLB4_20p11.23a ### chr20 rmsk gene 19069865 19070467 . - . gene_id "ERVLB4_20p11.23a"; transcript_id "ERVLB4_20p11.23a"; locus "ERVLB4_20p11.23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1695"; model_cov "648"; model_pct "11.3"; chr20 rmsk exon 19069865 19070467 1773 - . gene_id "ERVLB4_20p11.23a"; transcript_id "ERVLB4_20p11.23a"; locus "ERVLB4_20p11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1695"; repClass "LTR"; repEnd "4923"; repFamily "ERVL"; repLeft "4275"; repStart "-791"; ### HERVH_20p11.23b ### chr20 rmsk gene 19752049 19756776 . - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1191"; model_cov "4042"; model_pct "52.4"; chr20 rmsk exon 19752049 19752476 3311 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr20 rmsk exon 19752477 19752854 2518 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr20 rmsk exon 19752855 19752930 381 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5740"; repStart "-1894"; chr20 rmsk exon 19752918 19753354 2936 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "3492"; repStart "-3783"; chr20 rmsk exon 19753345 19753492 866 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr20 rmsk exon 19753487 19756345 19992 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr20 rmsk exon 19756348 19756776 3382 - . gene_id "HERVH_20p11.23b"; transcript_id "HERVH_20p11.23b"; locus "HERVH_20p11.23b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1191"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_20p11.23a ### chr20 rmsk gene 20821507 20824442 . - . gene_id "ERV316A3_20p11.23a"; transcript_id "ERV316A3_20p11.23a"; locus "ERV316A3_20p11.23a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2651"; model_cov "1913"; model_pct "36.6"; chr20 rmsk exon 20821507 20821698 530 - . gene_id "ERV316A3_20p11.23a"; transcript_id "ERV316A3_20p11.23a"; locus "ERV316A3_20p11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2651"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "1"; repStart "-222"; chr20 rmsk exon 20821699 20822318 3940 - . gene_id "ERV316A3_20p11.23a"; transcript_id "ERV316A3_20p11.23a"; locus "ERV316A3_20p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2651"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "4609"; repStart "-1"; chr20 rmsk exon 20822813 20824050 3940 - . gene_id "ERV316A3_20p11.23a"; transcript_id "ERV316A3_20p11.23a"; locus "ERV316A3_20p11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2651"; repClass "LTR"; repEnd "4608"; repFamily "ERVL"; repLeft "3311"; repStart "-618"; chr20 rmsk exon 20824123 20824442 827 - . gene_id "ERV316A3_20p11.23a"; transcript_id "ERV316A3_20p11.23a"; locus "ERV316A3_20p11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2651"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "11"; repStart "-71"; ### ERVLE_20p11.23b ### chr20 rmsk gene 20979578 20980495 . - . gene_id "ERVLE_20p11.23b"; transcript_id "ERVLE_20p11.23b"; locus "ERVLE_20p11.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3483"; model_cov "1106"; model_pct "19.5"; chr20 rmsk exon 20979578 20980495 2166 - . gene_id "ERVLE_20p11.23b"; transcript_id "ERVLE_20p11.23b"; locus "ERVLE_20p11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3483"; repClass "LTR"; repEnd "4951"; repFamily "ERVL"; repLeft "3845"; repStart "-716"; ### ERV316A3_20p11.23b ### chr20 rmsk gene 21082214 21083365 . + . gene_id "ERV316A3_20p11.23b"; transcript_id "ERV316A3_20p11.23b"; locus "ERV316A3_20p11.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2652"; model_cov "862"; model_pct "16.5"; chr20 rmsk exon 21082214 21083093 2585 + . gene_id "ERV316A3_20p11.23b"; transcript_id "ERV316A3_20p11.23b"; locus "ERV316A3_20p11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2652"; repClass "LTR"; repEnd "5146"; repFamily "ERVL"; repLeft "-80"; repStart "4284"; chr20 rmsk exon 21083160 21083365 443 + . gene_id "ERV316A3_20p11.23b"; transcript_id "ERV316A3_20p11.23b"; locus "ERV316A3_20p11.23b"; repName "LTR16A2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2652"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-224"; repStart "58"; ### ERVLB4_20p11.23b ### chr20 rmsk gene 21298478 21300213 . - . gene_id "ERVLB4_20p11.23b"; transcript_id "ERVLB4_20p11.23b"; locus "ERVLB4_20p11.23b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1697"; model_cov "1329"; model_pct "23.3"; chr20 rmsk exon 21298478 21298668 885 - . gene_id "ERVLB4_20p11.23b"; transcript_id "ERVLB4_20p11.23b"; locus "ERVLB4_20p11.23b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1697"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "197"; repStart "0"; chr20 rmsk exon 21298670 21298757 649 - . gene_id "ERVLB4_20p11.23b"; transcript_id "ERVLB4_20p11.23b"; locus "ERVLB4_20p11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1697"; repClass "LTR"; repEnd "3706"; repFamily "ERVL"; repLeft "3618"; repStart "-2008"; chr20 rmsk exon 21298741 21299907 6537 - . gene_id "ERVLB4_20p11.23b"; transcript_id "ERVLB4_20p11.23b"; locus "ERVLB4_20p11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1697"; repClass "LTR"; repEnd "1242"; repFamily "ERVL"; repLeft "1"; repStart "-4472"; chr20 rmsk exon 21299915 21300213 1215 - . gene_id "ERVLB4_20p11.23b"; transcript_id "ERVLB4_20p11.23b"; locus "ERVLB4_20p11.23b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1697"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "91"; repStart "-7"; ### PRIMA41_20p11.22 ### chr20 rmsk gene 21651235 21657407 . + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0152"; model_cov "5163"; model_pct "66.6"; chr20 rmsk exon 21651235 21651751 4231 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 21651839 21652742 7050 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "-6826"; repStart "3"; chr20 rmsk exon 21652735 21654384 12476 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "3055"; repFamily "ERV1"; repLeft "-4701"; repStart "1363"; chr20 rmsk exon 21654385 21656356 15790 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "-1361"; repStart "4399"; chr20 rmsk exon 21656353 21656887 3857 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "7208"; chr20 rmsk exon 21656888 21657407 4316 + . gene_id "PRIMA41_20p11.22"; transcript_id "PRIMA41_20p11.22"; locus "PRIMA41_20p11.22"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0152"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_20p11.21 ### chr20 rmsk gene 22876298 22877624 . - . gene_id "ERVLE_20p11.21"; transcript_id "ERVLE_20p11.21"; locus "ERVLE_20p11.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3484"; model_cov "977"; model_pct "17.2"; chr20 rmsk exon 22876298 22876650 889 - . gene_id "ERVLE_20p11.21"; transcript_id "ERVLE_20p11.21"; locus "ERVLE_20p11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3484"; repClass "LTR"; repEnd "5320"; repFamily "ERVL"; repLeft "4942"; repStart "-347"; chr20 rmsk exon 22876687 22877107 1370 - . gene_id "ERVLE_20p11.21"; transcript_id "ERVLE_20p11.21"; locus "ERVLE_20p11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3484"; repClass "LTR"; repEnd "4855"; repFamily "ERVL"; repLeft "4439"; repStart "-812"; chr20 rmsk exon 22877427 22877624 1370 - . gene_id "ERVLE_20p11.21"; transcript_id "ERVLE_20p11.21"; locus "ERVLE_20p11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3484"; repClass "LTR"; repEnd "4438"; repFamily "ERVL"; repLeft "4255"; repStart "-1229"; ### MER4B_20p11.21 ### chr20 rmsk gene 22963472 22965503 . + . gene_id "MER4B_20p11.21"; transcript_id "MER4B_20p11.21"; locus "MER4B_20p11.21"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0457"; model_cov "1254"; model_pct "18.6"; chr20 rmsk exon 22963472 22963553 526 + . gene_id "MER4B_20p11.21"; transcript_id "MER4B_20p11.21"; locus "MER4B_20p11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0457"; repClass "LTR"; repEnd "3538"; repFamily "ERV1"; repLeft "-3220"; repStart "3457"; chr20 rmsk exon 22964342 22965401 5542 + . gene_id "MER4B_20p11.21"; transcript_id "MER4B_20p11.21"; locus "MER4B_20p11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0457"; repClass "LTR"; repEnd "4007"; repFamily "ERV1"; repLeft "-2751"; repStart "2915"; chr20 rmsk exon 22965416 22965503 380 + . gene_id "MER4B_20p11.21"; transcript_id "MER4B_20p11.21"; locus "MER4B_20p11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0457"; repClass "LTR"; repEnd "6058"; repFamily "ERV1"; repLeft "-700"; repStart "5977"; ### HML3_20p11.21 ### chr20 rmsk gene 23466925 23473419 . + . gene_id "HML3_20p11.21"; transcript_id "HML3_20p11.21"; locus "HML3_20p11.21"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0230"; model_cov "6004"; model_pct "99.7"; chr20 rmsk exon 23466925 23467437 4352 + . gene_id "HML3_20p11.21"; transcript_id "HML3_20p11.21"; locus "HML3_20p11.21"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0230"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr20 rmsk exon 23467438 23468142 46214 + . gene_id "HML3_20p11.21"; transcript_id "HML3_20p11.21"; locus "HML3_20p11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0230"; repClass "LTR"; repEnd "727"; repFamily "ERVK"; repLeft "-5294"; repStart "1"; chr20 rmsk exon 23468262 23473419 46214 + . gene_id "HML3_20p11.21"; transcript_id "HML3_20p11.21"; locus "HML3_20p11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0230"; repClass "LTR"; repEnd "6006"; repFamily "ERVK"; repLeft "-15"; repStart "728"; ### HERVL_20p11.21 ### chr20 rmsk gene 24019390 24021424 . + . gene_id "HERVL_20p11.21"; transcript_id "HERVL_20p11.21"; locus "HERVL_20p11.21"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1217"; model_cov "1615"; model_pct "28.6"; chr20 rmsk exon 24019390 24019823 3264 + . gene_id "HERVL_20p11.21"; transcript_id "HERVL_20p11.21"; locus "HERVL_20p11.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1217"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr20 rmsk exon 24019824 24021242 11400 + . gene_id "HERVL_20p11.21"; transcript_id "HERVL_20p11.21"; locus "HERVL_20p11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1217"; repClass "LTR"; repEnd "1427"; repFamily "ERVL"; repLeft "-4227"; repStart "1"; chr20 rmsk exon 24021228 24021424 1269 + . gene_id "HERVL_20p11.21"; transcript_id "HERVL_20p11.21"; locus "HERVL_20p11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1217"; repClass "LTR"; repEnd "5321"; repFamily "ERVL"; repLeft "-333"; repStart "5132"; ### ERVLB4_20p11.21a ### chr20 rmsk gene 24192401 24195929 . + . gene_id "ERVLB4_20p11.21a"; transcript_id "ERVLB4_20p11.21a"; locus "ERVLB4_20p11.21a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1698"; model_cov "3274"; model_pct "57.3"; chr20 rmsk exon 24192401 24192489 411 + . gene_id "ERVLB4_20p11.21a"; transcript_id "ERVLB4_20p11.21a"; locus "ERVLB4_20p11.21a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1698"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "-3"; repStart "425"; chr20 rmsk exon 24192514 24192834 1718 + . gene_id "ERVLB4_20p11.21a"; transcript_id "ERVLB4_20p11.21a"; locus "ERVLB4_20p11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1698"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "-5363"; repStart "29"; chr20 rmsk exon 24193022 24195929 15464 + . gene_id "ERVLB4_20p11.21a"; transcript_id "ERVLB4_20p11.21a"; locus "ERVLB4_20p11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1698"; repClass "LTR"; repEnd "5029"; repFamily "ERVL"; repLeft "-685"; repStart "2077"; ### ERVLB4_20p11.21b ### chr20 rmsk gene 24326480 24331710 . - . gene_id "ERVLB4_20p11.21b"; transcript_id "ERVLB4_20p11.21b"; locus "ERVLB4_20p11.21b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1700"; model_cov "4465"; model_pct "78.1"; chr20 rmsk exon 24326480 24326865 1301 - . gene_id "ERVLB4_20p11.21b"; transcript_id "ERVLB4_20p11.21b"; locus "ERVLB4_20p11.21b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1700"; repClass "LTR"; repEnd "504"; repFamily "ERVL"; repLeft "145"; repStart "-52"; chr20 rmsk exon 24326868 24327139 25772 - . gene_id "ERVLB4_20p11.21b"; transcript_id "ERVLB4_20p11.21b"; locus "ERVLB4_20p11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1700"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5455"; repStart "0"; chr20 rmsk exon 24327436 24331710 25772 - . gene_id "ERVLB4_20p11.21b"; transcript_id "ERVLB4_20p11.21b"; locus "ERVLB4_20p11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1700"; repClass "LTR"; repEnd "5454"; repFamily "ERVL"; repLeft "1248"; repStart "-260"; ### HERVE_20p11.21a ### chr20 rmsk gene 24919226 24921721 . + . gene_id "HERVE_20p11.21a"; transcript_id "HERVE_20p11.21a"; locus "HERVE_20p11.21a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0159"; model_cov "1988"; model_pct "25.4"; chr20 rmsk exon 24919226 24919728 3971 + . gene_id "HERVE_20p11.21a"; transcript_id "HERVE_20p11.21a"; locus "HERVE_20p11.21a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0159"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 24919729 24921721 14843 + . gene_id "HERVE_20p11.21a"; transcript_id "HERVE_20p11.21a"; locus "HERVE_20p11.21a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0159"; repClass "LTR"; repEnd "1989"; repFamily "ERV1"; repLeft "-5824"; repStart "1"; ### HERVE_20p11.21b ### chr20 rmsk gene 24927945 24933027 . + . gene_id "HERVE_20p11.21b"; transcript_id "HERVE_20p11.21b"; locus "HERVE_20p11.21b"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0160"; model_cov "4879"; model_pct "62.4"; chr20 rmsk exon 24927945 24932579 35177 + . gene_id "HERVE_20p11.21b"; transcript_id "HERVE_20p11.21b"; locus "HERVE_20p11.21b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0160"; repClass "LTR"; repEnd "6705"; repFamily "ERV1"; repLeft "-1108"; repStart "1975"; chr20 rmsk exon 24932582 24932731 1150 + . gene_id "HERVE_20p11.21b"; transcript_id "HERVE_20p11.21b"; locus "HERVE_20p11.21b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0160"; repClass "LTR"; repEnd "7079"; repFamily "ERV1"; repLeft "-734"; repStart "6930"; chr20 rmsk exon 24932732 24933027 2249 + . gene_id "HERVE_20p11.21b"; transcript_id "HERVE_20p11.21b"; locus "HERVE_20p11.21b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0160"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "206"; ### ERVLB4_20p11.21c ### chr20 rmsk gene 24937735 24942401 . - . gene_id "ERVLB4_20p11.21c"; transcript_id "ERVLB4_20p11.21c"; locus "ERVLB4_20p11.21c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1701"; model_cov "4170"; model_pct "73.0"; chr20 rmsk exon 24937735 24941813 19708 - . gene_id "ERVLB4_20p11.21c"; transcript_id "ERVLB4_20p11.21c"; locus "ERVLB4_20p11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1701"; repClass "LTR"; repEnd "4218"; repFamily "ERVL"; repLeft "48"; repStart "-1496"; chr20 rmsk exon 24941879 24942401 2094 - . gene_id "ERVLB4_20p11.21c"; transcript_id "ERVLB4_20p11.21c"; locus "ERVLB4_20p11.21c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1701"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_20p11.21d ### chr20 rmsk gene 25124259 25128147 . + . gene_id "ERVLB4_20p11.21d"; transcript_id "ERVLB4_20p11.21d"; locus "ERVLB4_20p11.21d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1702"; model_cov "3623"; model_pct "63.4"; chr20 rmsk exon 25124259 25124683 22738 + . gene_id "ERVLB4_20p11.21d"; transcript_id "ERVLB4_20p11.21d"; locus "ERVLB4_20p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1702"; repClass "LTR"; repEnd "2311"; repFamily "ERVL"; repLeft "-3403"; repStart "1881"; chr20 rmsk exon 25124983 25128147 22738 + . gene_id "ERVLB4_20p11.21d"; transcript_id "ERVLB4_20p11.21d"; locus "ERVLB4_20p11.21d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1702"; repClass "LTR"; repEnd "5505"; repFamily "ERVL"; repLeft "-209"; repStart "2312"; ### MER41_20p11.21a ### chr20 rmsk gene 25163526 25165633 . - . gene_id "MER41_20p11.21a"; transcript_id "MER41_20p11.21a"; locus "MER41_20p11.21a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0529"; model_cov "1278"; model_pct "21.5"; chr20 rmsk exon 25163526 25164055 3862 - . gene_id "MER41_20p11.21a"; transcript_id "MER41_20p11.21a"; locus "MER41_20p11.21a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0529"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chr20 rmsk exon 25164056 25164232 1299 - . gene_id "MER41_20p11.21a"; transcript_id "MER41_20p11.21a"; locus "MER41_20p11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0529"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5770"; repStart "0"; chr20 rmsk exon 25164231 25164615 7578 - . gene_id "MER41_20p11.21a"; transcript_id "MER41_20p11.21a"; locus "MER41_20p11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0529"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "5025"; repStart "-544"; chr20 rmsk exon 25164907 25165633 7578 - . gene_id "MER41_20p11.21a"; transcript_id "MER41_20p11.21a"; locus "MER41_20p11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0529"; repClass "LTR"; repEnd "5024"; repFamily "ERV1"; repLeft "4299"; repStart "-922"; ### MER41_20p11.21b ### chr20 rmsk gene 25172422 25173065 . - . gene_id "MER41_20p11.21b"; transcript_id "MER41_20p11.21b"; locus "MER41_20p11.21b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0530"; model_cov "659"; model_pct "11.1"; chr20 rmsk exon 25172422 25173065 3313 - . gene_id "MER41_20p11.21b"; transcript_id "MER41_20p11.21b"; locus "MER41_20p11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0530"; repClass "LTR"; repEnd "4436"; repFamily "ERV1"; repLeft "3777"; repStart "-1510"; ### HUERSP1_20p11.21 ### chr20 rmsk gene 25326233 25328103 . + . gene_id "HUERSP1_20p11.21"; transcript_id "HUERSP1_20p11.21"; locus "HUERSP1_20p11.21"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0201"; model_cov "940"; model_pct "15.0"; chr20 rmsk exon 25326233 25327185 5271 + . gene_id "HUERSP1_20p11.21"; transcript_id "HUERSP1_20p11.21"; locus "HUERSP1_20p11.21"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0201"; repClass "LTR"; repEnd "6257"; repFamily "ERV1"; repLeft "-6"; repStart "5317"; chr20 rmsk exon 25327495 25328103 3419 + . gene_id "HUERSP1_20p11.21"; transcript_id "HUERSP1_20p11.21"; locus "HUERSP1_20p11.21"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0201"; repClass "LTR"; repEnd "585"; repFamily "ERV1"; repLeft "-106"; repStart "1"; ### HML6_20p11.21 ### chr20 rmsk gene 25394133 25403271 . - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0097"; model_cov "7186"; model_pct "99.8"; chr20 rmsk exon 25394133 25394629 2931 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr20 rmsk exon 25394632 25397542 20382 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "4253"; repStart "-2"; chr20 rmsk exon 25397922 25400931 28296 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "4256"; repFamily "ERVK"; repLeft "1217"; repStart "-2946"; chr20 rmsk exon 25401241 25402113 28296 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "1216"; repFamily "ERVK"; repLeft "358"; repStart "-5986"; chr20 rmsk exon 25402413 25402759 28296 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "357"; repFamily "ERVK"; repLeft "15"; repStart "-6845"; chr20 rmsk exon 25402773 25403271 3143 - . gene_id "HML6_20p11.21"; transcript_id "HML6_20p11.21"; locus "HML6_20p11.21"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0097"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_20p11.21a ### chr20 rmsk gene 25635457 25640441 . - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0770"; model_cov "3734"; model_pct "56.6"; chr20 rmsk exon 25635457 25635592 3168 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0770"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "339"; repStart "0"; chr20 rmsk exon 25635895 25636211 3168 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0770"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "2"; repStart "-134"; chr20 rmsk exon 25636220 25638886 17078 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0770"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3837"; repStart "-2"; chr20 rmsk exon 25638886 25639243 8966 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0770"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3303"; repStart "-2917"; chr20 rmsk exon 25639546 25639650 8966 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0770"; repClass "LTR"; repEnd "3302"; repFamily "ERV1"; repLeft "3216"; repStart "-3296"; chr20 rmsk exon 25640005 25640441 8966 - . gene_id "MER4_20p11.21a"; transcript_id "MER4_20p11.21a"; locus "MER4_20p11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0770"; repClass "LTR"; repEnd "3215"; repFamily "ERV1"; repLeft "2704"; repStart "-3383"; ### MER4_20p11.21b ### chr20 rmsk gene 25640680 25643684 . - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; category "insert*"; intModel "MER4-int"; locid "MER4-int_0771"; model_cov "1771"; model_pct "26.8"; chr20 rmsk exon 25640680 25641805 8966 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0771"; repClass "LTR"; repEnd "3215"; repFamily "ERV1"; repLeft "1894"; repStart "-3383"; chr20 rmsk exon 25642390 25642589 8966 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0771"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "1159"; repStart "-5217"; chr20 rmsk exon 25642618 25642760 8966 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0771"; repClass "LTR"; repEnd "1158"; repFamily "ERV1"; repLeft "995"; repStart "-5440"; chr20 rmsk exon 25642826 25642896 332 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0771"; repClass "LTR"; repEnd "753"; repFamily "ERV1"; repLeft "688"; repStart "-5845"; chr20 rmsk exon 25642946 25643590 3110 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0771"; repClass "LTR"; repEnd "806"; repFamily "ERV1"; repLeft "1"; repStart "-5792"; chr20 rmsk exon 25643594 25643684 3372 - . gene_id "MER4_20p11.21b"; transcript_id "MER4_20p11.21b"; locus "MER4_20p11.21b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0771"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "386"; repStart "0"; ### ERV316A3_20p11.21 ### chr20 rmsk gene 25671515 25673906 . - . gene_id "ERV316A3_20p11.21"; transcript_id "ERV316A3_20p11.21"; locus "ERV316A3_20p11.21"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2653"; model_cov "930"; model_pct "17.8"; chr20 rmsk exon 25671515 25671798 890 - . gene_id "ERV316A3_20p11.21"; transcript_id "ERV316A3_20p11.21"; locus "ERV316A3_20p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2653"; repClass "LTR"; repEnd "4313"; repFamily "ERVL"; repLeft "4028"; repStart "-913"; chr20 rmsk exon 25671788 25671970 641 - . gene_id "ERV316A3_20p11.21"; transcript_id "ERV316A3_20p11.21"; locus "ERV316A3_20p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2653"; repClass "LTR"; repEnd "868"; repFamily "ERVL"; repLeft "690"; repStart "-4358"; chr20 rmsk exon 25673451 25673906 674 - . gene_id "ERV316A3_20p11.21"; transcript_id "ERV316A3_20p11.21"; locus "ERV316A3_20p11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2653"; repClass "LTR"; repEnd "640"; repFamily "ERVL"; repLeft "173"; repStart "-4586"; ### PABLB_20p11.1 ### chr20 rmsk gene 25740120 25741406 . - . gene_id "PABLB_20p11.1"; transcript_id "PABLB_20p11.1"; locus "PABLB_20p11.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0101"; model_cov "1669"; model_pct "23.4"; chr20 rmsk exon 25740120 25741406 2094 - . gene_id "PABLB_20p11.1"; transcript_id "PABLB_20p11.1"; locus "PABLB_20p11.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0101"; repClass "LTR"; repEnd "6823"; repFamily "ERV1"; repLeft "5154"; repStart "-299"; ### ERVLE_20p11.1 ### chr20 rmsk gene 25943356 25944986 . + . gene_id "ERVLE_20p11.1"; transcript_id "ERVLE_20p11.1"; locus "ERVLE_20p11.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3487"; model_cov "1836"; model_pct "32.4"; chr20 rmsk exon 25943356 25944003 576 + . gene_id "ERVLE_20p11.1"; transcript_id "ERVLE_20p11.1"; locus "ERVLE_20p11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3487"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "-2126"; repStart "2710"; chr20 rmsk exon 25943978 25944986 2092 + . gene_id "ERVLE_20p11.1"; transcript_id "ERVLE_20p11.1"; locus "ERVLE_20p11.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3487"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "4228"; ### PRIMA41_20q11.1a ### chr20 rmsk gene 29362746 29365741 . - . gene_id "PRIMA41_20q11.1a"; transcript_id "PRIMA41_20q11.1a"; locus "PRIMA41_20q11.1a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0153"; model_cov "2379"; model_pct "30.7"; chr20 rmsk exon 29362746 29364053 6125 - . gene_id "PRIMA41_20q11.1a"; transcript_id "PRIMA41_20q11.1a"; locus "PRIMA41_20q11.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0153"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "4519"; repStart "-1885"; chr20 rmsk exon 29364701 29365741 6125 - . gene_id "PRIMA41_20q11.1a"; transcript_id "PRIMA41_20q11.1a"; locus "PRIMA41_20q11.1a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0153"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "3491"; repStart "-3238"; ### PRIMA41_20q11.1b ### chr20 rmsk gene 29372222 29374070 . - . gene_id "PRIMA41_20q11.1b"; transcript_id "PRIMA41_20q11.1b"; locus "PRIMA41_20q11.1b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0154"; model_cov "1756"; model_pct "22.6"; chr20 rmsk exon 29372222 29372561 594 - . gene_id "PRIMA41_20q11.1b"; transcript_id "PRIMA41_20q11.1b"; locus "PRIMA41_20q11.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0154"; repClass "LTR"; repEnd "3482"; repFamily "ERV1"; repLeft "3135"; repStart "-4274"; chr20 rmsk exon 29372690 29374070 2853 - . gene_id "PRIMA41_20q11.1b"; transcript_id "PRIMA41_20q11.1b"; locus "PRIMA41_20q11.1b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0154"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1578"; repStart "-4769"; ### ERVLE_20q11.1a ### chr20 rmsk gene 29615371 29616801 . - . gene_id "ERVLE_20q11.1a"; transcript_id "ERVLE_20q11.1a"; locus "ERVLE_20q11.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3488"; model_cov "1437"; model_pct "25.4"; chr20 rmsk exon 29615371 29616347 2122 - . gene_id "ERVLE_20q11.1a"; transcript_id "ERVLE_20q11.1a"; locus "ERVLE_20q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3488"; repClass "LTR"; repEnd "5219"; repFamily "ERVL"; repLeft "4247"; repStart "-448"; chr20 rmsk exon 29616394 29616801 497 - . gene_id "ERVLE_20q11.1a"; transcript_id "ERVLE_20q11.1a"; locus "ERVLE_20q11.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3488"; repClass "LTR"; repEnd "3566"; repFamily "ERVL"; repLeft "3101"; repStart "-2101"; ### PRIMA41_20q11.1c ### chr20 rmsk gene 29800258 29805865 . - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0155"; model_cov "3948"; model_pct "50.9"; chr20 rmsk exon 29800258 29801859 5203 - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0155"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4517"; repStart "-1593"; chr20 rmsk exon 29802494 29802584 5203 - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0155"; repClass "LTR"; repEnd "4516"; repFamily "ERV1"; repLeft "4428"; repStart "-3240"; chr20 rmsk exon 29802578 29804422 3015 - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0155"; repClass "LTR"; repEnd "3620"; repFamily "ERV1"; repLeft "1734"; repStart "-4136"; chr20 rmsk exon 29805384 29805540 3015 - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0155"; repClass "LTR"; repEnd "1733"; repFamily "ERV1"; repLeft "1582"; repStart "-6023"; chr20 rmsk exon 29805695 29805865 304 - . gene_id "PRIMA41_20q11.1c"; transcript_id "PRIMA41_20q11.1c"; locus "PRIMA41_20q11.1c"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0155"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "1269"; repStart "-6310"; ### ERVLE_20q11.1b ### chr20 rmsk gene 30239726 30241357 . + . gene_id "ERVLE_20q11.1b"; transcript_id "ERVLE_20q11.1b"; locus "ERVLE_20q11.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3489"; model_cov "1701"; model_pct "30.0"; chr20 rmsk exon 30239726 30240125 623 + . gene_id "ERVLE_20q11.1b"; transcript_id "ERVLE_20q11.1b"; locus "ERVLE_20q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3489"; repClass "LTR"; repEnd "3330"; repFamily "ERVL"; repLeft "-2337"; repStart "2889"; chr20 rmsk exon 30240121 30240374 543 + . gene_id "ERVLE_20q11.1b"; transcript_id "ERVLE_20q11.1b"; locus "ERVLE_20q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3489"; repClass "LTR"; repEnd "3541"; repFamily "ERVL"; repLeft "-2126"; repStart "3286"; chr20 rmsk exon 30240349 30241357 2104 + . gene_id "ERVLE_20q11.1b"; transcript_id "ERVLE_20q11.1b"; locus "ERVLE_20q11.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3489"; repClass "LTR"; repEnd "5233"; repFamily "ERVL"; repLeft "-434"; repStart "4228"; ### MER4_20q11.21 ### chr20 rmsk gene 30624841 30625822 . - . gene_id "MER4_20q11.21"; transcript_id "MER4_20q11.21"; locus "MER4_20q11.21"; category "internal"; intModel "MER4-int"; locid "MER4-int_0773"; model_cov "1068"; model_pct "16.2"; chr20 rmsk exon 30624841 30625822 2703 - . gene_id "MER4_20q11.21"; transcript_id "MER4_20q11.21"; locus "MER4_20q11.21"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0773"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "29"; repStart "-5501"; ### PRIMA41_20q11.21 ### chr20 rmsk gene 30849760 30855867 . + . gene_id "PRIMA41_20q11.21"; transcript_id "PRIMA41_20q11.21"; locus "PRIMA41_20q11.21"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0156"; model_cov "4578"; model_pct "59.0"; chr20 rmsk exon 30849760 30849916 11700 + . gene_id "PRIMA41_20q11.21"; transcript_id "PRIMA41_20q11.21"; locus "PRIMA41_20q11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0156"; repClass "LTR"; repEnd "1727"; repFamily "ERV1"; repLeft "-6029"; repStart "1582"; chr20 rmsk exon 30850868 30853617 11700 + . gene_id "PRIMA41_20q11.21"; transcript_id "PRIMA41_20q11.21"; locus "PRIMA41_20q11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0156"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "-3239"; repStart "1728"; chr20 rmsk exon 30854266 30855867 11700 + . gene_id "PRIMA41_20q11.21"; transcript_id "PRIMA41_20q11.21"; locus "PRIMA41_20q11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0156"; repClass "LTR"; repEnd "6162"; repFamily "ERV1"; repLeft "-1594"; repStart "4518"; ### ERVLE_20q11.21 ### chr20 rmsk gene 33263814 33266601 . + . gene_id "ERVLE_20q11.21"; transcript_id "ERVLE_20q11.21"; locus "ERVLE_20q11.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3492"; model_cov "1989"; model_pct "35.1"; chr20 rmsk exon 33263814 33264563 1705 + . gene_id "ERVLE_20q11.21"; transcript_id "ERVLE_20q11.21"; locus "ERVLE_20q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3492"; repClass "LTR"; repEnd "3768"; repFamily "ERVL"; repLeft "-1899"; repStart "2987"; chr20 rmsk exon 33264851 33264932 1705 + . gene_id "ERVLE_20q11.21"; transcript_id "ERVLE_20q11.21"; locus "ERVLE_20q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3492"; repClass "LTR"; repEnd "3846"; repFamily "ERVL"; repLeft "-1821"; repStart "3769"; chr20 rmsk exon 33264932 33265394 1401 + . gene_id "ERVLE_20q11.21"; transcript_id "ERVLE_20q11.21"; locus "ERVLE_20q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3492"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "-772"; repStart "4423"; chr20 rmsk exon 33265923 33266601 1467 + . gene_id "ERVLE_20q11.21"; transcript_id "ERVLE_20q11.21"; locus "ERVLE_20q11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3492"; repClass "LTR"; repEnd "5561"; repFamily "ERVL"; repLeft "-106"; repStart "4902"; ### HML2_20q11.22 ### chr20 rmsk gene 34127754 34136578 . + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0120"; model_cov "4785"; model_pct "63.5"; chr20 rmsk exon 34127754 34128531 5764 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1001"; repFamily "ERVK"; repLeft "-1"; repStart "220"; chr20 rmsk exon 34128532 34129076 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "556"; repFamily "ERVK"; repLeft "-6980"; repStart "1"; chr20 rmsk exon 34129382 34129595 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "-6778"; repStart "557"; chr20 rmsk exon 34129673 34130246 3702 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1325"; repFamily "ERVK"; repLeft "-6211"; repStart "743"; chr20 rmsk exon 34130235 34131782 12082 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "5190"; repFamily "ERVK"; repLeft "-2346"; repStart "3636"; chr20 rmsk exon 34133703 34135592 14111 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "7535"; repFamily "ERVK"; repLeft "-1"; repStart "5642"; chr20 rmsk exon 34135594 34136578 5656 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL40_20q11.22 ### chr20 rmsk gene 34231890 34234436 . - . gene_id "HERVL40_20q11.22"; transcript_id "HERVL40_20q11.22"; locus "HERVL40_20q11.22"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0435"; model_cov "1695"; model_pct "30.7"; chr20 rmsk exon 34231890 34232341 1992 - . gene_id "HERVL40_20q11.22"; transcript_id "HERVL40_20q11.22"; locus "HERVL40_20q11.22"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0435"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr20 rmsk exon 34232344 34232624 1292 - . gene_id "HERVL40_20q11.22"; transcript_id "HERVL40_20q11.22"; locus "HERVL40_20q11.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0435"; repClass "LTR"; repEnd "5528"; repFamily "ERVL"; repLeft "5226"; repStart "-2"; chr20 rmsk exon 34232620 34233143 2052 - . gene_id "HERVL40_20q11.22"; transcript_id "HERVL40_20q11.22"; locus "HERVL40_20q11.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0435"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "4443"; repStart "-558"; chr20 rmsk exon 34233609 34234436 3005 - . gene_id "HERVL40_20q11.22"; transcript_id "HERVL40_20q11.22"; locus "HERVL40_20q11.22"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0435"; repClass "LTR"; repEnd "3960"; repFamily "ERVL"; repLeft "3096"; repStart "-1570"; ### HERVFRD_20q11.23a ### chr20 rmsk gene 36967240 36971042 . - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0178"; model_cov "1256"; model_pct "17.4"; chr20 rmsk exon 36967240 36967383 950 - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0178"; repClass "LTR"; repEnd "252"; repFamily "ERV1"; repLeft "110"; repStart "-482"; chr20 rmsk exon 36967679 36967793 6873 - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0178"; repClass "LTR"; repEnd "1265"; repFamily "ERV1"; repLeft "1154"; repStart "-5940"; chr20 rmsk exon 36969083 36970169 6873 - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0178"; repClass "LTR"; repEnd "1152"; repFamily "ERV1"; repLeft "50"; repStart "-6053"; chr20 rmsk exon 36970530 36970572 6873 - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0178"; repClass "LTR"; repEnd "49"; repFamily "ERV1"; repLeft "6"; repStart "-7156"; chr20 rmsk exon 36970578 36971042 1974 - . gene_id "HERVFRD_20q11.23a"; transcript_id "HERVFRD_20q11.23a"; locus "HERVFRD_20q11.23a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0178"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "244"; repStart "-23"; ### HERVFRD_20q11.23b ### chr20 rmsk gene 36982349 36987355 . + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; category "internal"; intModel "MER50-int"; locid "MER50-int_0179"; model_cov "3147"; model_pct "43.7"; chr20 rmsk exon 36982349 36982462 4936 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "1265"; repFamily "ERV1"; repLeft "-5940"; repStart "1152"; chr20 rmsk exon 36982754 36983286 4936 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "1879"; repFamily "ERV1"; repLeft "-5326"; repStart "1266"; chr20 rmsk exon 36983582 36984107 4936 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "2347"; repFamily "ERV1"; repLeft "-4858"; repStart "1880"; chr20 rmsk exon 36984409 36985418 4936 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "3369"; repFamily "ERV1"; repLeft "-3836"; repStart "2348"; chr20 rmsk exon 36985732 36985916 5238 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "6357"; repFamily "ERV1"; repLeft "-848"; repStart "6178"; chr20 rmsk exon 36986213 36986916 5238 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "7060"; repFamily "ERV1"; repLeft "-145"; repStart "6358"; chr20 rmsk exon 36987300 36987355 302 + . gene_id "HERVFRD_20q11.23b"; transcript_id "HERVFRD_20q11.23b"; locus "HERVFRD_20q11.23b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0179"; repClass "LTR"; repEnd "7205"; repFamily "ERV1"; repLeft "0"; repStart "7153"; ### HERVH_20q11.23 ### chr20 rmsk gene 38592396 38598799 . - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1192"; model_cov "5261"; model_pct "68.2"; chr20 rmsk exon 38592396 38592804 2850 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr20 rmsk exon 38592805 38593194 2372 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr20 rmsk exon 38593195 38593403 1410 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr20 rmsk exon 38593405 38594026 4208 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr20 rmsk exon 38594029 38598385 16519 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr20 rmsk exon 38598388 38598799 2873 - . gene_id "HERVH_20q11.23"; transcript_id "HERVH_20q11.23"; locus "HERVH_20q11.23"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1192"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_20q12a ### chr20 rmsk gene 39413394 39414308 . + . gene_id "ERV316A3_20q12a"; transcript_id "ERV316A3_20q12a"; locus "ERV316A3_20q12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2654"; model_cov "534"; model_pct "10.2"; chr20 rmsk exon 39413394 39413515 283 + . gene_id "ERV316A3_20q12a"; transcript_id "ERV316A3_20q12a"; locus "ERV316A3_20q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2654"; repClass "LTR"; repEnd "224"; repFamily "ERVL"; repLeft "-5002"; repStart "95"; chr20 rmsk exon 39413610 39413625 1328 + . gene_id "ERV316A3_20q12a"; transcript_id "ERV316A3_20q12a"; locus "ERV316A3_20q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2654"; repClass "LTR"; repEnd "3699"; repFamily "ERVL"; repLeft "-1527"; repStart "3684"; chr20 rmsk exon 39413860 39414191 1328 + . gene_id "ERV316A3_20q12a"; transcript_id "ERV316A3_20q12a"; locus "ERV316A3_20q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2654"; repClass "LTR"; repEnd "4041"; repFamily "ERVL"; repLeft "-1185"; repStart "3700"; chr20 rmsk exon 39414259 39414308 295 + . gene_id "ERV316A3_20q12a"; transcript_id "ERV316A3_20q12a"; locus "ERV316A3_20q12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2654"; repClass "LTR"; repEnd "4366"; repFamily "ERVL"; repLeft "-860"; repStart "4317"; ### LTR19_20q12a ### chr20 rmsk gene 39482540 39483717 . + . gene_id "LTR19_20q12a"; transcript_id "LTR19_20q12a"; locus "LTR19_20q12a"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0059"; model_cov "1178"; model_pct "21.1"; chr20 rmsk exon 39482540 39483717 8007 + . gene_id "LTR19_20q12a"; transcript_id "LTR19_20q12a"; locus "LTR19_20q12a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0059"; repClass "LTR"; repEnd "3510"; repFamily "ERV1"; repLeft "-2076"; repStart "2332"; ### LTR19_20q12b ### chr20 rmsk gene 39486770 39489051 . + . gene_id "LTR19_20q12b"; transcript_id "LTR19_20q12b"; locus "LTR19_20q12b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0060"; model_cov "1633"; model_pct "29.2"; chr20 rmsk exon 39486770 39487053 2036 + . gene_id "LTR19_20q12b"; transcript_id "LTR19_20q12b"; locus "LTR19_20q12b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0060"; repClass "LTR"; repEnd "3787"; repFamily "ERV1"; repLeft "-1799"; repStart "3502"; chr20 rmsk exon 39487138 39488453 9284 + . gene_id "LTR19_20q12b"; transcript_id "LTR19_20q12b"; locus "LTR19_20q12b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0060"; repClass "LTR"; repEnd "5482"; repFamily "ERV1"; repLeft "-104"; repStart "4134"; chr20 rmsk exon 39488558 39489051 2424 + . gene_id "LTR19_20q12b"; transcript_id "LTR19_20q12b"; locus "LTR19_20q12b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0060"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_20q12b ### chr20 rmsk gene 39624402 39625925 . + . gene_id "ERV316A3_20q12b"; transcript_id "ERV316A3_20q12b"; locus "ERV316A3_20q12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2656"; model_cov "895"; model_pct "17.1"; chr20 rmsk exon 39624402 39624538 335 + . gene_id "ERV316A3_20q12b"; transcript_id "ERV316A3_20q12b"; locus "ERV316A3_20q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2656"; repClass "LTR"; repEnd "228"; repFamily "ERVL"; repLeft "-4998"; repStart "79"; chr20 rmsk exon 39624549 39624600 2628 + . gene_id "ERV316A3_20q12b"; transcript_id "ERV316A3_20q12b"; locus "ERV316A3_20q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2656"; repClass "LTR"; repEnd "3575"; repFamily "ERVL"; repLeft "-1651"; repStart "3528"; chr20 rmsk exon 39625008 39625705 2628 + . gene_id "ERV316A3_20q12b"; transcript_id "ERV316A3_20q12b"; locus "ERV316A3_20q12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2656"; repClass "LTR"; repEnd "4275"; repFamily "ERVL"; repLeft "-951"; repStart "3576"; chr20 rmsk exon 39625789 39625925 492 + . gene_id "ERV316A3_20q12b"; transcript_id "ERV316A3_20q12b"; locus "ERV316A3_20q12b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2656"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "-86"; repStart "241"; ### HML3_20q12 ### chr20 rmsk gene 39721012 39727144 . + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0231"; model_cov "5094"; model_pct "84.6"; chr20 rmsk exon 39721012 39721532 4266 + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0231"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr20 rmsk exon 39721533 39722262 21483 + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0231"; repClass "LTR"; repEnd "737"; repFamily "ERVK"; repLeft "-5284"; repStart "1"; chr20 rmsk exon 39722303 39724340 21483 + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0231"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "738"; chr20 rmsk exon 39724341 39726629 17843 + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0231"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3723"; chr20 rmsk exon 39726630 39727144 4246 + . gene_id "HML3_20q12"; transcript_id "HML3_20q12"; locus "HML3_20q12"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0231"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_20q12a ### chr20 rmsk gene 40093110 40099009 . + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1193"; model_cov "4896"; model_pct "63.5"; chr20 rmsk exon 40093110 40093543 2700 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 40093544 40094345 17976 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "-6820"; repStart "1"; chr20 rmsk exon 40094654 40096732 17976 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "-4727"; repStart "894"; chr20 rmsk exon 40096727 40096873 763 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr20 rmsk exon 40096873 40097368 3247 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr20 rmsk exon 40097371 40097987 2755 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr20 rmsk exon 40097989 40098202 1210 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr20 rmsk exon 40098203 40098575 2389 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr20 rmsk exon 40098576 40099009 2700 + . gene_id "HERVH_20q12a"; transcript_id "HERVH_20q12a"; locus "HERVH_20q12a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1193"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_20q12b ### chr20 rmsk gene 40269054 40274761 . + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1194"; model_cov "4908"; model_pct "63.6"; chr20 rmsk exon 40269054 40269503 3551 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr20 rmsk exon 40269506 40272453 20316 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr20 rmsk exon 40272448 40272595 920 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr20 rmsk exon 40272586 40273049 3023 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr20 rmsk exon 40273052 40273715 4371 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr20 rmsk exon 40273717 40273933 1425 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr20 rmsk exon 40273932 40274311 2546 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr20 rmsk exon 40274312 40274761 3681 + . gene_id "HERVH_20q12b"; transcript_id "HERVH_20q12b"; locus "HERVH_20q12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1194"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_20q12 ### chr20 rmsk gene 40488907 40491323 . - . gene_id "ERVLE_20q12"; transcript_id "ERVLE_20q12"; locus "ERVLE_20q12"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3493"; model_cov "1752"; model_pct "30.9"; chr20 rmsk exon 40488907 40489466 1009 - . gene_id "ERVLE_20q12"; transcript_id "ERVLE_20q12"; locus "ERVLE_20q12"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3493"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "2"; repStart "-25"; chr20 rmsk exon 40489469 40490344 4116 - . gene_id "ERVLE_20q12"; transcript_id "ERVLE_20q12"; locus "ERVLE_20q12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3493"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "4784"; repStart "-1"; chr20 rmsk exon 40490633 40491323 4116 - . gene_id "ERVLE_20q12"; transcript_id "ERVLE_20q12"; locus "ERVLE_20q12"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3493"; repClass "LTR"; repEnd "4783"; repFamily "ERVL"; repLeft "3913"; repStart "-884"; ### ERVLB4_20q12 ### chr20 rmsk gene 41794828 41797456 . - . gene_id "ERVLB4_20q12"; transcript_id "ERVLB4_20q12"; locus "ERVLB4_20q12"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1703"; model_cov "2125"; model_pct "37.2"; chr20 rmsk exon 41794828 41795262 2463 - . gene_id "ERVLB4_20q12"; transcript_id "ERVLB4_20q12"; locus "ERVLB4_20q12"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1703"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr20 rmsk exon 41795265 41797292 12186 - . gene_id "ERVLB4_20q12"; transcript_id "ERVLB4_20q12"; locus "ERVLB4_20q12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1703"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3589"; repStart "0"; chr20 rmsk exon 41797293 41797456 1113 - . gene_id "ERVLB4_20q12"; transcript_id "ERVLB4_20q12"; locus "ERVLB4_20q12"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1703"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "2"; repStart "-246"; ### ERVLE_20q13.12a ### chr20 rmsk gene 43778522 43779783 . + . gene_id "ERVLE_20q13.12a"; transcript_id "ERVLE_20q13.12a"; locus "ERVLE_20q13.12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3494"; model_cov "616"; model_pct "10.9"; chr20 rmsk exon 43778522 43778609 344 + . gene_id "ERVLE_20q13.12a"; transcript_id "ERVLE_20q13.12a"; locus "ERVLE_20q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3494"; repClass "LTR"; repEnd "3400"; repFamily "ERVL"; repLeft "-2267"; repStart "3313"; chr20 rmsk exon 43779290 43779551 513 + . gene_id "ERVLE_20q13.12a"; transcript_id "ERVLE_20q13.12a"; locus "ERVLE_20q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3494"; repClass "LTR"; repEnd "4412"; repFamily "ERVL"; repLeft "-1255"; repStart "4128"; chr20 rmsk exon 43779560 43779783 737 + . gene_id "ERVLE_20q13.12a"; transcript_id "ERVLE_20q13.12a"; locus "ERVLE_20q13.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3494"; repClass "LTR"; repEnd "4679"; repFamily "ERVL"; repLeft "-988"; repStart "4434"; ### ERVLE_20q13.12b ### chr20 rmsk gene 44281659 44289339 . - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3495"; model_cov "4410"; model_pct "77.8"; chr20 rmsk exon 44281659 44281669 651 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "5315"; repFamily "ERVL"; repLeft "5305"; repStart "-352"; chr20 rmsk exon 44281704 44283325 4257 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "5304"; repFamily "ERVL"; repLeft "3521"; repStart "-363"; chr20 rmsk exon 44283440 44283852 3431 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "3365"; repFamily "ERVL"; repLeft "2940"; repStart "-2302"; chr20 rmsk exon 44283984 44284393 3431 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "2939"; repFamily "ERVL"; repLeft "2516"; repStart "-2728"; chr20 rmsk exon 44284691 44284885 3431 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "2317"; repStart "-3152"; chr20 rmsk exon 44284882 44285155 797 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "2214"; repFamily "ERVL"; repLeft "1953"; repStart "-3453"; chr20 rmsk exon 44287031 44287296 1523 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "1938"; repFamily "ERVL"; repLeft "1669"; repStart "-3729"; chr20 rmsk exon 44288106 44288520 1523 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "1662"; repFamily "ERVL"; repLeft "1222"; repStart "-4005"; chr20 rmsk exon 44288736 44289109 1100 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "1204"; repFamily "ERVL"; repLeft "824"; repStart "-4463"; chr20 rmsk exon 44289129 44289339 598 - . gene_id "ERVLE_20q13.12b"; transcript_id "ERVLE_20q13.12b"; locus "ERVLE_20q13.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3495"; repClass "LTR"; repEnd "786"; repFamily "ERVL"; repLeft "565"; repStart "-4881"; ### MER101_20q13.12 ### chr20 rmsk gene 44668371 44670228 . + . gene_id "MER101_20q13.12"; transcript_id "MER101_20q13.12"; locus "MER101_20q13.12"; category "internal"; intModel "MER101-int"; locid "MER101-int_0404"; model_cov "1029"; model_pct "15.5"; chr20 rmsk exon 44668371 44668561 1941 + . gene_id "MER101_20q13.12"; transcript_id "MER101_20q13.12"; locus "MER101_20q13.12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0404"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "-4635"; repStart "1815"; chr20 rmsk exon 44668869 44669000 1941 + . gene_id "MER101_20q13.12"; transcript_id "MER101_20q13.12"; locus "MER101_20q13.12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0404"; repClass "LTR"; repEnd "2129"; repFamily "ERV1"; repLeft "-4510"; repStart "2005"; chr20 rmsk exon 44669293 44669769 1941 + . gene_id "MER101_20q13.12"; transcript_id "MER101_20q13.12"; locus "MER101_20q13.12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0404"; repClass "LTR"; repEnd "3172"; repFamily "ERV1"; repLeft "-3467"; repStart "2582"; chr20 rmsk exon 44670083 44670228 1458 + . gene_id "MER101_20q13.12"; transcript_id "MER101_20q13.12"; locus "MER101_20q13.12"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0404"; repClass "LTR"; repEnd "3299"; repFamily "ERV1"; repLeft "-3340"; repStart "3173"; ### HERVH_20q13.12a ### chr20 rmsk gene 44670229 44676774 . + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1195"; model_cov "5458"; model_pct "70.8"; chr20 rmsk exon 44670229 44670691 3939 + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1195"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr20 rmsk exon 44670692 44671119 1078 + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1195"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr20 rmsk exon 44671178 44675874 14548 + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1195"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "-2693"; repStart "450"; chr20 rmsk exon 44675879 44676307 2527 + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1195"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr20 rmsk exon 44676308 44676774 3937 + . gene_id "HERVH_20q13.12a"; transcript_id "HERVH_20q13.12a"; locus "HERVH_20q13.12a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1195"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_20q13.12a ### chr20 rmsk gene 45087483 45090911 . + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1705"; model_cov "2614"; model_pct "45.7"; chr20 rmsk exon 45087483 45087673 258 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "644"; repFamily "ERVL"; repLeft "-5070"; repStart "423"; chr20 rmsk exon 45087873 45088194 701 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "1291"; repFamily "ERVL"; repLeft "-4423"; repStart "969"; chr20 rmsk exon 45088406 45088416 277 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "1602"; repFamily "ERVL"; repLeft "-4112"; repStart "1593"; chr20 rmsk exon 45088914 45089387 777 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "2098"; repFamily "ERVL"; repLeft "-3616"; repStart "1556"; chr20 rmsk exon 45089408 45089706 872 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "2467"; repFamily "ERVL"; repLeft "-3247"; repStart "2148"; chr20 rmsk exon 45089768 45090072 586 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "2865"; repFamily "ERVL"; repLeft "-2849"; repStart "2544"; chr20 rmsk exon 45090146 45090360 515 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "3519"; repFamily "ERVL"; repLeft "-2195"; repStart "3296"; chr20 rmsk exon 45090390 45090911 803 + . gene_id "ERVLB4_20q13.12a"; transcript_id "ERVLB4_20q13.12a"; locus "ERVLB4_20q13.12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1705"; repClass "LTR"; repEnd "5333"; repFamily "ERVL"; repLeft "-381"; repStart "4676"; ### HERVL_20q13.12 ### chr20 rmsk gene 45139878 45142975 . - . gene_id "HERVL_20q13.12"; transcript_id "HERVL_20q13.12"; locus "HERVL_20q13.12"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1219"; model_cov "2664"; model_pct "47.1"; chr20 rmsk exon 45139878 45142525 21608 - . gene_id "HERVL_20q13.12"; transcript_id "HERVL_20q13.12"; locus "HERVL_20q13.12"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1219"; repClass "LTR"; repEnd "2665"; repFamily "ERVL"; repLeft "1"; repStart "-2989"; chr20 rmsk exon 45142526 45142975 3165 - . gene_id "HERVL_20q13.12"; transcript_id "HERVL_20q13.12"; locus "HERVL_20q13.12"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1219"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4B_20q13.12 ### chr20 rmsk gene 45437429 45440604 . + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0458"; model_cov "2101"; model_pct "31.1"; chr20 rmsk exon 45437429 45438066 2861 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3451"; chr20 rmsk exon 45438068 45438246 1241 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "4649"; repFamily "ERV1"; repLeft "-2109"; repStart "4454"; chr20 rmsk exon 45438236 45438610 5973 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "5799"; repFamily "ERV1"; repLeft "-959"; repStart "5421"; chr20 rmsk exon 45438907 45439385 5973 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "6306"; repFamily "ERV1"; repLeft "-452"; repStart "5800"; chr20 rmsk exon 45439446 45439672 2351 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "6602"; repFamily "ERV1"; repLeft "-156"; repStart "6372"; chr20 rmsk exon 45439976 45440143 2351 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6603"; chr20 rmsk exon 45440144 45440394 1195 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "429"; repFamily "ERV1"; repLeft "-352"; repStart "172"; chr20 rmsk exon 45440380 45440604 1391 + . gene_id "MER4B_20q13.12"; transcript_id "MER4B_20q13.12"; locus "MER4B_20q13.12"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0458"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "0"; repStart "531"; ### MER41_20q13.12 ### chr20 rmsk gene 45482970 45489460 . - . gene_id "MER41_20q13.12"; transcript_id "MER41_20q13.12"; locus "MER41_20q13.12"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0535"; model_cov "5513"; model_pct "92.7"; chr20 rmsk exon 45482970 45487112 21951 - . gene_id "MER41_20q13.12"; transcript_id "MER41_20q13.12"; locus "MER41_20q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0535"; repClass "LTR"; repEnd "4095"; repFamily "ERV1"; repLeft "-1078"; repStart "-1851"; chr20 rmsk exon 45487225 45487290 339 - . gene_id "MER41_20q13.12"; transcript_id "MER41_20q13.12"; locus "MER41_20q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0535"; repClass "LTR"; repEnd "1266"; repFamily "ERV1"; repLeft "1203"; repStart "-4680"; chr20 rmsk exon 45488549 45488824 1811 - . gene_id "MER41_20q13.12"; transcript_id "MER41_20q13.12"; locus "MER41_20q13.12"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0535"; repClass "LTR"; repEnd "278"; repFamily "ERV1"; repLeft "1"; repStart "-5668"; chr20 rmsk exon 45488825 45489460 4232 - . gene_id "MER41_20q13.12"; transcript_id "MER41_20q13.12"; locus "MER41_20q13.12"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0535"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_20q13.12b ### chr20 rmsk gene 45519890 45522646 . - . gene_id "ERVLB4_20q13.12b"; transcript_id "ERVLB4_20q13.12b"; locus "ERVLB4_20q13.12b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1706"; model_cov "1603"; model_pct "28.1"; chr20 rmsk exon 45519890 45520369 2273 - . gene_id "ERVLB4_20q13.12b"; transcript_id "ERVLB4_20q13.12b"; locus "ERVLB4_20q13.12b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1706"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "1"; repStart "-63"; chr20 rmsk exon 45520370 45521709 6831 - . gene_id "ERVLB4_20q13.12b"; transcript_id "ERVLB4_20q13.12b"; locus "ERVLB4_20q13.12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1706"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4111"; repStart "0"; chr20 rmsk exon 45522159 45522182 1762 - . gene_id "ERVLB4_20q13.12b"; transcript_id "ERVLB4_20q13.12b"; locus "ERVLB4_20q13.12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1706"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "444"; repStart "-56"; chr20 rmsk exon 45522230 45522646 1762 - . gene_id "ERVLB4_20q13.12b"; transcript_id "ERVLB4_20q13.12b"; locus "ERVLB4_20q13.12b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1706"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-77"; ### HERVH_20q13.12b ### chr20 rmsk gene 45584245 45588141 . - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1196"; model_cov "3507"; model_pct "45.5"; chr20 rmsk exon 45584245 45584654 2871 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr20 rmsk exon 45584655 45585028 2099 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr20 rmsk exon 45585029 45585147 793 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5697"; repStart "-1894"; chr20 rmsk exon 45585141 45585685 3733 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "5031"; repFamily "ERV1"; repLeft "4488"; repStart "-2682"; chr20 rmsk exon 45585688 45586534 5495 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr20 rmsk exon 45586514 45588141 9818 - . gene_id "HERVH_20q13.12b"; transcript_id "HERVH_20q13.12b"; locus "HERVH_20q13.12b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1196"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1395"; repStart "-4718"; ### ERVLE_20q13.12c ### chr20 rmsk gene 45740172 45742994 . - . gene_id "ERVLE_20q13.12c"; transcript_id "ERVLE_20q13.12c"; locus "ERVLE_20q13.12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3498"; model_cov "779"; model_pct "13.7"; chr20 rmsk exon 45740172 45740409 391 - . gene_id "ERVLE_20q13.12c"; transcript_id "ERVLE_20q13.12c"; locus "ERVLE_20q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3498"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "4733"; repStart "-695"; chr20 rmsk exon 45741836 45742040 354 - . gene_id "ERVLE_20q13.12c"; transcript_id "ERVLE_20q13.12c"; locus "ERVLE_20q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3498"; repClass "LTR"; repEnd "4098"; repFamily "ERVL"; repLeft "3886"; repStart "-1569"; chr20 rmsk exon 45742671 45742994 640 - . gene_id "ERVLE_20q13.12c"; transcript_id "ERVLE_20q13.12c"; locus "ERVLE_20q13.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3498"; repClass "LTR"; repEnd "3751"; repFamily "ERVL"; repLeft "3423"; repStart "-1916"; ### HERVH_20q13.12c ### chr20 rmsk gene 45759334 45765245 . + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1197"; model_cov "5204"; model_pct "67.5"; chr20 rmsk exon 45759334 45759751 2771 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr20 rmsk exon 45759754 45763699 9323 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr20 rmsk exon 45763702 45764319 3085 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr20 rmsk exon 45764321 45764486 1097 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "5765"; repFamily "ERV1"; repLeft "-1948"; repStart "5600"; chr20 rmsk exon 45764460 45764833 2253 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7327"; chr20 rmsk exon 45764834 45765245 2785 + . gene_id "HERVH_20q13.12c"; transcript_id "HERVH_20q13.12c"; locus "HERVH_20q13.12c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1197"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_20q13.12d ### chr20 rmsk gene 46423989 46424578 . - . gene_id "ERVLE_20q13.12d"; transcript_id "ERVLE_20q13.12d"; locus "ERVLE_20q13.12d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3499"; model_cov "596"; model_pct "10.5"; chr20 rmsk exon 46423989 46424374 636 - . gene_id "ERVLE_20q13.12d"; transcript_id "ERVLE_20q13.12d"; locus "ERVLE_20q13.12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3499"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "4865"; repStart "-392"; chr20 rmsk exon 46424387 46424578 415 - . gene_id "ERVLE_20q13.12d"; transcript_id "ERVLE_20q13.12d"; locus "ERVLE_20q13.12d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3499"; repClass "LTR"; repEnd "4976"; repFamily "ERVL"; repLeft "4790"; repStart "-691"; ### ERV316A3_20q13.12 ### chr20 rmsk gene 46432835 46435517 . - . gene_id "ERV316A3_20q13.12"; transcript_id "ERV316A3_20q13.12"; locus "ERV316A3_20q13.12"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2660"; model_cov "2068"; model_pct "39.6"; chr20 rmsk exon 46432835 46433010 630 - . gene_id "ERV316A3_20q13.12"; transcript_id "ERV316A3_20q13.12"; locus "ERV316A3_20q13.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2660"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "4870"; repStart "-186"; chr20 rmsk exon 46433015 46433360 3551 - . gene_id "ERV316A3_20q13.12"; transcript_id "ERV316A3_20q13.12"; locus "ERV316A3_20q13.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2660"; repClass "LTR"; repEnd "3146"; repFamily "ERVL"; repLeft "2801"; repStart "-2080"; chr20 rmsk exon 46433986 46435517 4444 - . gene_id "ERV316A3_20q13.12"; transcript_id "ERV316A3_20q13.12"; locus "ERV316A3_20q13.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2660"; repClass "LTR"; repEnd "2800"; repFamily "ERVL"; repLeft "1247"; repStart "-2426"; ### HERVIP10FH_20q13.12 ### chr20 rmsk gene 47520090 47521780 . - . gene_id "HERVIP10FH_20q13.12"; transcript_id "HERVIP10FH_20q13.12"; locus "HERVIP10FH_20q13.12"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0183"; model_cov "1177"; model_pct "23.1"; chr20 rmsk exon 47520090 47521294 2471 - . gene_id "HERVIP10FH_20q13.12"; transcript_id "HERVIP10FH_20q13.12"; locus "HERVIP10FH_20q13.12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0183"; repClass "LTR"; repEnd "1178"; repFamily "ERV1"; repLeft "1"; repStart "-3924"; chr20 rmsk exon 47521296 47521780 3350 - . gene_id "HERVIP10FH_20q13.12"; transcript_id "HERVIP10FH_20q13.12"; locus "HERVIP10FH_20q13.12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0183"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "1"; repStart "-5"; ### ERVLB4_20q13.13 ### chr20 rmsk gene 48611470 48613023 . - . gene_id "ERVLB4_20q13.13"; transcript_id "ERVLB4_20q13.13"; locus "ERVLB4_20q13.13"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1707"; model_cov "1687"; model_pct "29.5"; chr20 rmsk exon 48611470 48612072 1913 - . gene_id "ERVLB4_20q13.13"; transcript_id "ERVLB4_20q13.13"; locus "ERVLB4_20q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1707"; repClass "LTR"; repEnd "2791"; repFamily "ERVL"; repLeft "2021"; repStart "-2923"; chr20 rmsk exon 48612087 48612185 275 - . gene_id "ERVLB4_20q13.13"; transcript_id "ERVLB4_20q13.13"; locus "ERVLB4_20q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1707"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "2005"; repStart "-3611"; chr20 rmsk exon 48612224 48613023 1785 - . gene_id "ERVLB4_20q13.13"; transcript_id "ERVLB4_20q13.13"; locus "ERVLB4_20q13.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1707"; repClass "LTR"; repEnd "1685"; repFamily "ERVL"; repLeft "866"; repStart "-4029"; ### MER4_20q13.13 ### chr20 rmsk gene 49550311 49558044 . + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0775"; model_cov "6572"; model_pct "99.6"; chr20 rmsk exon 49550311 49550556 1636 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0775"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "215"; chr20 rmsk exon 49550560 49550921 1458 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0775"; repClass "LTR"; repEnd "381"; repFamily "ERV1"; repLeft "-6217"; repStart "1"; chr20 rmsk exon 49551226 49551702 2836 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0775"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "77"; chr20 rmsk exon 49551848 49552497 3202 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0775"; repClass "LTR"; repEnd "1823"; repFamily "ERV1"; repLeft "-4775"; repStart "602"; chr20 rmsk exon 49552551 49554354 4295 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0775"; repClass "LTR"; repEnd "3715"; repFamily "ERV1"; repLeft "-2883"; repStart "1407"; chr20 rmsk exon 49554355 49554988 13824 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0775"; repClass "LTR"; repEnd "4579"; repFamily "ERV1"; repLeft "-2019"; repStart "3932"; chr20 rmsk exon 49555290 49557304 13824 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0775"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4580"; chr20 rmsk exon 49557617 49558044 2657 + . gene_id "MER4_20q13.13"; transcript_id "MER4_20q13.13"; locus "MER4_20q13.13"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0775"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### MER101_20q13.13 ### chr20 rmsk gene 49960039 49962972 . + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0405"; model_cov "702"; model_pct "10.6"; chr20 rmsk exon 49960039 49960168 793 + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0405"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "0"; repStart "313"; chr20 rmsk exon 49960654 49960664 930 + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0405"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "-6404"; repStart "225"; chr20 rmsk exon 49960968 49961048 930 + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0405"; repClass "LTR"; repEnd "315"; repFamily "ERV1"; repLeft "-6324"; repStart "236"; chr20 rmsk exon 49961359 49961758 1364 + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0405"; repClass "LTR"; repEnd "2582"; repFamily "ERV1"; repLeft "-4057"; repStart "2248"; chr20 rmsk exon 49962706 49962972 794 + . gene_id "MER101_20q13.13"; transcript_id "MER101_20q13.13"; locus "MER101_20q13.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0405"; repClass "LTR"; repEnd "3779"; repFamily "ERV1"; repLeft "-2860"; repStart "3500"; ### ERVLB4_20q13.2 ### chr20 rmsk gene 54817566 54819424 . + . gene_id "ERVLB4_20q13.2"; transcript_id "ERVLB4_20q13.2"; locus "ERVLB4_20q13.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1708"; model_cov "1278"; model_pct "22.4"; chr20 rmsk exon 54817566 54818842 7115 + . gene_id "ERVLB4_20q13.2"; transcript_id "ERVLB4_20q13.2"; locus "ERVLB4_20q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1708"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4436"; chr20 rmsk exon 54818843 54819424 1560 + . gene_id "ERVLB4_20q13.2"; transcript_id "ERVLB4_20q13.2"; locus "ERVLB4_20q13.2"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1708"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-36"; repStart "1"; ### HERVW_20q13.2 ### chr20 rmsk gene 55348967 55353051 . + . gene_id "HERVW_20q13.2"; transcript_id "HERVW_20q13.2"; locus "HERVW_20q13.2"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0297"; model_cov "3765"; model_pct "43.6"; chr20 rmsk exon 55348967 55351220 18993 + . gene_id "HERVW_20q13.2"; transcript_id "HERVW_20q13.2"; locus "HERVW_20q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0297"; repClass "LTR"; repEnd "5651"; repFamily "ERV1"; repLeft "-2975"; repStart "3402"; chr20 rmsk exon 55351210 55352725 12664 + . gene_id "HERVW_20q13.2"; transcript_id "HERVW_20q13.2"; locus "HERVW_20q13.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0297"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "7110"; chr20 rmsk exon 55352726 55353051 2667 + . gene_id "HERVW_20q13.2"; transcript_id "HERVW_20q13.2"; locus "HERVW_20q13.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0297"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_20q13.2 ### chr20 rmsk gene 56026476 56028361 . - . gene_id "ERV316A3_20q13.2"; transcript_id "ERV316A3_20q13.2"; locus "ERV316A3_20q13.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2662"; model_cov "1680"; model_pct "32.1"; chr20 rmsk exon 56026476 56028129 3698 - . gene_id "ERV316A3_20q13.2"; transcript_id "ERV316A3_20q13.2"; locus "ERV316A3_20q13.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2662"; repClass "LTR"; repEnd "4558"; repFamily "ERVL"; repLeft "2878"; repStart "-668"; chr20 rmsk exon 56028215 56028361 620 - . gene_id "ERV316A3_20q13.2"; transcript_id "ERV316A3_20q13.2"; locus "ERV316A3_20q13.2"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2662"; repClass "LTR"; repEnd "152"; repFamily "ERVL"; repLeft "1"; repStart "-286"; ### ERVLE_20q13.32a ### chr20 rmsk gene 58383829 58385116 . + . gene_id "ERVLE_20q13.32a"; transcript_id "ERVLE_20q13.32a"; locus "ERVLE_20q13.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3503"; model_cov "941"; model_pct "16.6"; chr20 rmsk exon 58383829 58383967 594 + . gene_id "ERVLE_20q13.32a"; transcript_id "ERVLE_20q13.32a"; locus "ERVLE_20q13.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3503"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "-5246"; repStart "278"; chr20 rmsk exon 58384267 58384368 594 + . gene_id "ERVLE_20q13.32a"; transcript_id "ERVLE_20q13.32a"; locus "ERVLE_20q13.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3503"; repClass "LTR"; repEnd "510"; repFamily "ERVL"; repLeft "-5157"; repStart "422"; chr20 rmsk exon 58384359 58384548 966 + . gene_id "ERVLE_20q13.32a"; transcript_id "ERVLE_20q13.32a"; locus "ERVLE_20q13.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3503"; repClass "LTR"; repEnd "3904"; repFamily "ERVL"; repLeft "-1763"; repStart "3559"; chr20 rmsk exon 58384846 58385116 966 + . gene_id "ERVLE_20q13.32a"; transcript_id "ERVLE_20q13.32a"; locus "ERVLE_20q13.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3503"; repClass "LTR"; repEnd "4223"; repFamily "ERVL"; repLeft "-1444"; repStart "3858"; ### HERVL_20q13.32 ### chr20 rmsk gene 58757673 58758406 . - . gene_id "HERVL_20q13.32"; transcript_id "HERVL_20q13.32"; locus "HERVL_20q13.32"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1222"; model_cov "685"; model_pct "12.1"; chr20 rmsk exon 58757673 58758345 5478 - . gene_id "HERVL_20q13.32"; transcript_id "HERVL_20q13.32"; locus "HERVL_20q13.32"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1222"; repClass "LTR"; repEnd "686"; repFamily "ERVL"; repLeft "1"; repStart "-4968"; chr20 rmsk exon 58758346 58758406 347 - . gene_id "HERVL_20q13.32"; transcript_id "HERVL_20q13.32"; locus "HERVL_20q13.32"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1222"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "391"; repStart "0"; ### ERVLE_20q13.32b ### chr20 rmsk gene 59171675 59173741 . - . gene_id "ERVLE_20q13.32b"; transcript_id "ERVLE_20q13.32b"; locus "ERVLE_20q13.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3505"; model_cov "2111"; model_pct "37.3"; chr20 rmsk exon 59171675 59171912 453 - . gene_id "ERVLE_20q13.32b"; transcript_id "ERVLE_20q13.32b"; locus "ERVLE_20q13.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3505"; repClass "LTR"; repEnd "5364"; repFamily "ERVL"; repLeft "5113"; repStart "-303"; chr20 rmsk exon 59171884 59173741 3952 - . gene_id "ERVLE_20q13.32b"; transcript_id "ERVLE_20q13.32b"; locus "ERVLE_20q13.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3505"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "29"; repStart "-3778"; ### ERV316A3_20q13.32a ### chr20 rmsk gene 59367431 59369987 . - . gene_id "ERV316A3_20q13.32a"; transcript_id "ERV316A3_20q13.32a"; locus "ERV316A3_20q13.32a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2663"; model_cov "2141"; model_pct "41.0"; chr20 rmsk exon 59367431 59367862 1489 - . gene_id "ERV316A3_20q13.32a"; transcript_id "ERV316A3_20q13.32a"; locus "ERV316A3_20q13.32a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2663"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "2"; repStart "-4"; chr20 rmsk exon 59367916 59368173 672 - . gene_id "ERV316A3_20q13.32a"; transcript_id "ERV316A3_20q13.32a"; locus "ERV316A3_20q13.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2663"; repClass "LTR"; repEnd "4124"; repFamily "ERVL"; repLeft "3648"; repStart "-1102"; chr20 rmsk exon 59368276 59369987 4701 - . gene_id "ERV316A3_20q13.32a"; transcript_id "ERV316A3_20q13.32a"; locus "ERV316A3_20q13.32a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2663"; repClass "LTR"; repEnd "4028"; repFamily "ERVL"; repLeft "2363"; repStart "-1198"; ### ERV316A3_20q13.32b ### chr20 rmsk gene 59439319 59441143 . + . gene_id "ERV316A3_20q13.32b"; transcript_id "ERV316A3_20q13.32b"; locus "ERV316A3_20q13.32b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2664"; model_cov "1222"; model_pct "23.4"; chr20 rmsk exon 59439319 59440194 1906 + . gene_id "ERV316A3_20q13.32b"; transcript_id "ERV316A3_20q13.32b"; locus "ERV316A3_20q13.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2664"; repClass "LTR"; repEnd "2759"; repFamily "ERVL"; repLeft "-2467"; repStart "1897"; chr20 rmsk exon 59440546 59440796 422 + . gene_id "ERV316A3_20q13.32b"; transcript_id "ERV316A3_20q13.32b"; locus "ERV316A3_20q13.32b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2664"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "-2101"; repStart "2765"; chr20 rmsk exon 59440827 59441143 277 + . gene_id "ERV316A3_20q13.32b"; transcript_id "ERV316A3_20q13.32b"; locus "ERV316A3_20q13.32b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2664"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "-80"; repStart "25"; ### HARLEQUIN_20q13.32 ### chr20 rmsk gene 59551577 59557922 . - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0170"; model_cov "5839"; model_pct "84.7"; chr20 rmsk exon 59551577 59552036 3661 - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0170"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 59552039 59556596 35953 - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0170"; repClass "LTR"; repEnd "6893"; repFamily "ERV1"; repLeft "2349"; repStart "-3"; chr20 rmsk exon 59556576 59557143 3564 - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0170"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1401"; repStart "-4938"; chr20 rmsk exon 59557123 59557179 4772 - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0170"; repClass "LTR"; repEnd "1002"; repFamily "ERV1"; repLeft "941"; repStart "-5894"; chr20 rmsk exon 59557223 59557922 4772 - . gene_id "HARLEQUIN_20q13.32"; transcript_id "HARLEQUIN_20q13.32"; locus "HARLEQUIN_20q13.32"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0170"; repClass "LTR"; repEnd "940"; repFamily "ERV1"; repLeft "263"; repStart "-5956"; ### ERVLE_20q13.33a ### chr20 rmsk gene 60126398 60128302 . - . gene_id "ERVLE_20q13.33a"; transcript_id "ERVLE_20q13.33a"; locus "ERVLE_20q13.33a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3506"; model_cov "657"; model_pct "11.6"; chr20 rmsk exon 60126398 60126676 486 - . gene_id "ERVLE_20q13.33a"; transcript_id "ERVLE_20q13.33a"; locus "ERVLE_20q13.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3506"; repClass "LTR"; repEnd "5546"; repFamily "ERVL"; repLeft "5244"; repStart "-121"; chr20 rmsk exon 60127762 60127835 283 - . gene_id "ERVLE_20q13.33a"; transcript_id "ERVLE_20q13.33a"; locus "ERVLE_20q13.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3506"; repClass "LTR"; repEnd "5140"; repFamily "ERVL"; repLeft "5068"; repStart "-527"; chr20 rmsk exon 60128021 60128302 957 - . gene_id "ERVLE_20q13.33a"; transcript_id "ERVLE_20q13.33a"; locus "ERVLE_20q13.33a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3506"; repClass "LTR"; repEnd "4816"; repFamily "ERVL"; repLeft "4533"; repStart "-851"; ### HERV4_20q13.33a ### chr20 rmsk gene 60282197 60284816 . + . gene_id "HERV4_20q13.33a"; transcript_id "HERV4_20q13.33a"; locus "HERV4_20q13.33a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0137"; model_cov "1588"; model_pct "24.3"; chr20 rmsk exon 60282197 60282437 1344 + . gene_id "HERV4_20q13.33a"; transcript_id "HERV4_20q13.33a"; locus "HERV4_20q13.33a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0137"; repClass "LTR"; repEnd "217"; repFamily "ERV1"; repLeft "-6322"; repStart "-30"; chr20 rmsk exon 60283259 60283718 1427 + . gene_id "HERV4_20q13.33a"; transcript_id "HERV4_20q13.33a"; locus "HERV4_20q13.33a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0137"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-6077"; repStart "206"; chr20 rmsk exon 60283714 60284816 7562 + . gene_id "HERV4_20q13.33a"; transcript_id "HERV4_20q13.33a"; locus "HERV4_20q13.33a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0137"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "-275"; repStart "5179"; ### HERV4_20q13.33b ### chr20 rmsk gene 60284995 60287337 . + . gene_id "HERV4_20q13.33b"; transcript_id "HERV4_20q13.33b"; locus "HERV4_20q13.33b"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0138"; model_cov "2099"; model_pct "32.1"; chr20 rmsk exon 60284995 60285134 290 + . gene_id "HERV4_20q13.33b"; transcript_id "HERV4_20q13.33b"; locus "HERV4_20q13.33b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0138"; repClass "LTR"; repEnd "4952"; repFamily "ERV1"; repLeft "-1587"; repStart "4813"; chr20 rmsk exon 60285673 60286726 1825 + . gene_id "HERV4_20q13.33b"; transcript_id "HERV4_20q13.33b"; locus "HERV4_20q13.33b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0138"; repClass "LTR"; repEnd "6326"; repFamily "ERV1"; repLeft "-213"; repStart "4366"; chr20 rmsk exon 60286729 60287337 4091 + . gene_id "HERV4_20q13.33b"; transcript_id "HERV4_20q13.33b"; locus "HERV4_20q13.33b"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0138"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "-18"; repStart "1"; ### HERVIP10FH_20q13.33a ### chr20 rmsk gene 61188476 61191053 . - . gene_id "HERVIP10FH_20q13.33a"; transcript_id "HERVIP10FH_20q13.33a"; locus "HERVIP10FH_20q13.33a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0187"; model_cov "1673"; model_pct "32.8"; chr20 rmsk exon 61188476 61189061 3102 - . gene_id "HERVIP10FH_20q13.33a"; transcript_id "HERVIP10FH_20q13.33a"; locus "HERVIP10FH_20q13.33a"; repName "LTR10E"; geneRegion "ltr"; locid "HERVIP10FH-int_0187"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr20 rmsk exon 61189129 61190291 4357 - . gene_id "HERVIP10FH_20q13.33a"; transcript_id "HERVIP10FH_20q13.33a"; locus "HERVIP10FH_20q13.33a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0187"; repClass "LTR"; repEnd "4931"; repFamily "ERV1"; repLeft "3783"; repStart "-171"; chr20 rmsk exon 61190545 61191053 2489 - . gene_id "HERVIP10FH_20q13.33a"; transcript_id "HERVIP10FH_20q13.33a"; locus "HERVIP10FH_20q13.33a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0187"; repClass "LTR"; repEnd "1298"; repFamily "ERV1"; repLeft "773"; repStart "-3804"; ### HERVIP10FH_20q13.33b ### chr20 rmsk gene 61191606 61192917 . - . gene_id "HERVIP10FH_20q13.33b"; transcript_id "HERVIP10FH_20q13.33b"; locus "HERVIP10FH_20q13.33b"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0188"; model_cov "855"; model_pct "16.8"; chr20 rmsk exon 61191606 61192233 3850 - . gene_id "HERVIP10FH_20q13.33b"; transcript_id "HERVIP10FH_20q13.33b"; locus "HERVIP10FH_20q13.33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0188"; repClass "LTR"; repEnd "2675"; repFamily "ERV1"; repLeft "2041"; repStart "-2427"; chr20 rmsk exon 61192680 61192857 934 - . gene_id "HERVIP10FH_20q13.33b"; transcript_id "HERVIP10FH_20q13.33b"; locus "HERVIP10FH_20q13.33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0188"; repClass "LTR"; repEnd "831"; repFamily "ERV1"; repLeft "664"; repStart "-4271"; chr20 rmsk exon 61192863 61192917 263 - . gene_id "HERVIP10FH_20q13.33b"; transcript_id "HERVIP10FH_20q13.33b"; locus "HERVIP10FH_20q13.33b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0188"; repClass "LTR"; repEnd "-331"; repFamily "ERV1"; repLeft "-385"; repStart "-5433"; ### ERV316A3_20q13.33a ### chr20 rmsk gene 62222348 62224463 . + . gene_id "ERV316A3_20q13.33a"; transcript_id "ERV316A3_20q13.33a"; locus "ERV316A3_20q13.33a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2666"; model_cov "1438"; model_pct "27.5"; chr20 rmsk exon 62222348 62222436 312 + . gene_id "ERV316A3_20q13.33a"; transcript_id "ERV316A3_20q13.33a"; locus "ERV316A3_20q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2666"; repClass "LTR"; repEnd "4291"; repFamily "ERVL"; repLeft "-935"; repStart "4202"; chr20 rmsk exon 62223038 62224270 1343 + . gene_id "ERV316A3_20q13.33a"; transcript_id "ERV316A3_20q13.33a"; locus "ERV316A3_20q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2666"; repClass "LTR"; repEnd "4942"; repFamily "ERVL"; repLeft "-284"; repStart "3593"; chr20 rmsk exon 62224367 62224463 271 + . gene_id "ERV316A3_20q13.33a"; transcript_id "ERV316A3_20q13.33a"; locus "ERV316A3_20q13.33a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2666"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-11"; repStart "370"; ### ERVLE_20q13.33b ### chr20 rmsk gene 62873312 62876267 . + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3507"; model_cov "1433"; model_pct "25.3"; chr20 rmsk exon 62873312 62873548 1861 + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3507"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-5095"; repStart "332"; chr20 rmsk exon 62874540 62875101 1861 + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3507"; repClass "LTR"; repEnd "1157"; repFamily "ERVL"; repLeft "-4510"; repStart "573"; chr20 rmsk exon 62875523 62875650 406 + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3507"; repClass "LTR"; repEnd "1428"; repFamily "ERVL"; repLeft "-4239"; repStart "1299"; chr20 rmsk exon 62875746 62876142 1037 + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3507"; repClass "LTR"; repEnd "1979"; repFamily "ERVL"; repLeft "-3688"; repStart "1562"; chr20 rmsk exon 62876205 62876267 375 + . gene_id "ERVLE_20q13.33b"; transcript_id "ERVLE_20q13.33b"; locus "ERVLE_20q13.33b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3507"; repClass "LTR"; repEnd "2132"; repFamily "ERVL"; repLeft "-3535"; repStart "2069"; ### PRIMA41_20q13.33 ### chr20 rmsk gene 63011048 63012270 . + . gene_id "PRIMA41_20q13.33"; transcript_id "PRIMA41_20q13.33"; locus "PRIMA41_20q13.33"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0159"; model_cov "1213"; model_pct "15.6"; chr20 rmsk exon 63011048 63012024 6879 + . gene_id "PRIMA41_20q13.33"; transcript_id "PRIMA41_20q13.33"; locus "PRIMA41_20q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0159"; repClass "LTR"; repEnd "6470"; repFamily "ERV1"; repLeft "-1286"; repStart "5494"; chr20 rmsk exon 63012030 63012270 1514 + . gene_id "PRIMA41_20q13.33"; transcript_id "PRIMA41_20q13.33"; locus "PRIMA41_20q13.33"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0159"; repClass "LTR"; repEnd "7525"; repFamily "ERV1"; repLeft "-231"; repStart "7288"; ### ERV316A3_20q13.33b ### chr20 rmsk gene 63702999 63704689 . + . gene_id "ERV316A3_20q13.33b"; transcript_id "ERV316A3_20q13.33b"; locus "ERV316A3_20q13.33b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2667"; model_cov "547"; model_pct "10.5"; chr20 rmsk exon 63702999 63703170 254 + . gene_id "ERV316A3_20q13.33b"; transcript_id "ERV316A3_20q13.33b"; locus "ERV316A3_20q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2667"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-2708"; repStart "2347"; chr20 rmsk exon 63703605 63703716 262 + . gene_id "ERV316A3_20q13.33b"; transcript_id "ERV316A3_20q13.33b"; locus "ERV316A3_20q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2667"; repClass "LTR"; repEnd "3089"; repFamily "ERVL"; repLeft "-2137"; repStart "2973"; chr20 rmsk exon 63704196 63704330 319 + . gene_id "ERV316A3_20q13.33b"; transcript_id "ERV316A3_20q13.33b"; locus "ERV316A3_20q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2667"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "-596"; repStart "4486"; chr20 rmsk exon 63704578 63704689 285 + . gene_id "ERV316A3_20q13.33b"; transcript_id "ERV316A3_20q13.33b"; locus "ERV316A3_20q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2667"; repClass "LTR"; repEnd "5181"; repFamily "ERVL"; repLeft "-45"; repStart "5065"; ### HERVL40_21p12a ### chr21 rmsk gene 5594737 5595412 . - . gene_id "HERVL40_21p12a"; transcript_id "HERVL40_21p12a"; locus "HERVL40_21p12a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0436"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 5594737 5594945 386 - . gene_id "HERVL40_21p12a"; transcript_id "HERVL40_21p12a"; locus "HERVL40_21p12a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0436"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "3298"; repStart "-1921"; chr21 rmsk exon 5595016 5595231 736 - . gene_id "HERVL40_21p12a"; transcript_id "HERVL40_21p12a"; locus "HERVL40_21p12a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0436"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "2942"; repStart "-2370"; chr21 rmsk exon 5595237 5595412 426 - . gene_id "HERVL40_21p12a"; transcript_id "HERVL40_21p12a"; locus "HERVL40_21p12a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0436"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "2580"; repStart "-2760"; ### HERVL66_21p12a ### chr21 rmsk gene 5621221 5625042 . - . gene_id "HERVL66_21p12a"; transcript_id "HERVL66_21p12a"; locus "HERVL66_21p12a"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0042"; model_cov "3285"; model_pct "75.9"; chr21 rmsk exon 5621221 5621557 2288 - . gene_id "HERVL66_21p12a"; transcript_id "HERVL66_21p12a"; locus "HERVL66_21p12a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0042"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "1"; repStart "-245"; chr21 rmsk exon 5621558 5622960 5239 - . gene_id "HERVL66_21p12a"; transcript_id "HERVL66_21p12a"; locus "HERVL66_21p12a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0042"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr21 rmsk exon 5622941 5624540 11375 - . gene_id "HERVL66_21p12a"; transcript_id "HERVL66_21p12a"; locus "HERVL66_21p12a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0042"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "187"; repStart "-2532"; chr21 rmsk exon 5624541 5625042 3570 - . gene_id "HERVL66_21p12a"; transcript_id "HERVL66_21p12a"; locus "HERVL66_21p12a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0042"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "3"; repStart "-62"; ### HERVL66_21p12b ### chr21 rmsk gene 5684294 5688115 . - . gene_id "HERVL66_21p12b"; transcript_id "HERVL66_21p12b"; locus "HERVL66_21p12b"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0043"; model_cov "3285"; model_pct "75.9"; chr21 rmsk exon 5684294 5684630 2288 - . gene_id "HERVL66_21p12b"; transcript_id "HERVL66_21p12b"; locus "HERVL66_21p12b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0043"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "1"; repStart "-245"; chr21 rmsk exon 5684631 5686033 5239 - . gene_id "HERVL66_21p12b"; transcript_id "HERVL66_21p12b"; locus "HERVL66_21p12b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0043"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr21 rmsk exon 5686014 5687613 11375 - . gene_id "HERVL66_21p12b"; transcript_id "HERVL66_21p12b"; locus "HERVL66_21p12b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0043"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "187"; repStart "-2532"; chr21 rmsk exon 5687614 5688115 3570 - . gene_id "HERVL66_21p12b"; transcript_id "HERVL66_21p12b"; locus "HERVL66_21p12b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0043"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "3"; repStart "-62"; ### HERVL40_21p12b ### chr21 rmsk gene 5737699 5739455 . - . gene_id "HERVL40_21p12b"; transcript_id "HERVL40_21p12b"; locus "HERVL40_21p12b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0437"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 5737699 5737861 511 - . gene_id "HERVL40_21p12b"; transcript_id "HERVL40_21p12b"; locus "HERVL40_21p12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0437"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chr21 rmsk exon 5738903 5739217 512 - . gene_id "HERVL40_21p12b"; transcript_id "HERVL40_21p12b"; locus "HERVL40_21p12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0437"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2843"; repStart "-2367"; chr21 rmsk exon 5739235 5739455 419 - . gene_id "HERVL40_21p12b"; transcript_id "HERVL40_21p12b"; locus "HERVL40_21p12b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0437"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2580"; repStart "-2718"; ### HERVL66_21p12c ### chr21 rmsk gene 5763495 5764988 . + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0044"; model_cov "1088"; model_pct "25.1"; chr21 rmsk exon 5763495 5763692 1256 + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0044"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1591"; chr21 rmsk exon 5763673 5764262 3987 + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0044"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2654"; chr21 rmsk exon 5764261 5764471 1004 + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0044"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chr21 rmsk exon 5764474 5764871 2464 + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0044"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "3"; chr21 rmsk exon 5764871 5764988 607 + . gene_id "HERVL66_21p12c"; transcript_id "HERVL66_21p12c"; locus "HERVL66_21p12c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0044"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-171"; repStart "331"; ### ERVLB4_21p12a ### chr21 rmsk gene 5793698 5794444 . - . gene_id "ERVLB4_21p12a"; transcript_id "ERVLB4_21p12a"; locus "ERVLB4_21p12a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1710"; model_cov "752"; model_pct "13.2"; chr21 rmsk exon 5793698 5794444 2945 - . gene_id "ERVLB4_21p12a"; transcript_id "ERVLB4_21p12a"; locus "ERVLB4_21p12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1710"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### HERVL40_21p12c ### chr21 rmsk gene 5858283 5860039 . - . gene_id "HERVL40_21p12c"; transcript_id "HERVL40_21p12c"; locus "HERVL40_21p12c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0438"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 5858283 5858445 511 - . gene_id "HERVL40_21p12c"; transcript_id "HERVL40_21p12c"; locus "HERVL40_21p12c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0438"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chr21 rmsk exon 5859487 5859801 512 - . gene_id "HERVL40_21p12c"; transcript_id "HERVL40_21p12c"; locus "HERVL40_21p12c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0438"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2843"; repStart "-2367"; chr21 rmsk exon 5859819 5860039 419 - . gene_id "HERVL40_21p12c"; transcript_id "HERVL40_21p12c"; locus "HERVL40_21p12c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0438"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2580"; repStart "-2718"; ### HERVL66_21p12d ### chr21 rmsk gene 5884079 5885572 . + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0045"; model_cov "1088"; model_pct "25.1"; chr21 rmsk exon 5884079 5884276 1256 + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0045"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1591"; chr21 rmsk exon 5884257 5884846 3987 + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0045"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2654"; chr21 rmsk exon 5884845 5885055 1004 + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0045"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chr21 rmsk exon 5885058 5885455 2464 + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0045"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "3"; chr21 rmsk exon 5885455 5885572 607 + . gene_id "HERVL66_21p12d"; transcript_id "HERVL66_21p12d"; locus "HERVL66_21p12d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0045"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-171"; repStart "331"; ### ERVLB4_21p12b ### chr21 rmsk gene 5914282 5915028 . - . gene_id "ERVLB4_21p12b"; transcript_id "ERVLB4_21p12b"; locus "ERVLB4_21p12b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1711"; model_cov "752"; model_pct "13.2"; chr21 rmsk exon 5914282 5915028 3209 - . gene_id "ERVLB4_21p12b"; transcript_id "ERVLB4_21p12b"; locus "ERVLB4_21p12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1711"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### HERVL40_21p12d ### chr21 rmsk gene 6225558 6226219 . + . gene_id "HERVL40_21p12d"; transcript_id "HERVL40_21p12d"; locus "HERVL40_21p12d"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0439"; model_cov "604"; model_pct "10.9"; chr21 rmsk exon 6225558 6225733 361 + . gene_id "HERVL40_21p12d"; transcript_id "HERVL40_21p12d"; locus "HERVL40_21p12d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0439"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "-2760"; repStart "2580"; chr21 rmsk exon 6225739 6225954 663 + . gene_id "HERVL40_21p12d"; transcript_id "HERVL40_21p12d"; locus "HERVL40_21p12d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0439"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "-2370"; repStart "2942"; chr21 rmsk exon 6226025 6226146 339 + . gene_id "HERVL40_21p12d"; transcript_id "HERVL40_21p12d"; locus "HERVL40_21p12d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0439"; repClass "LTR"; repEnd "3427"; repFamily "ERVL"; repLeft "-2103"; repStart "3298"; chr21 rmsk exon 6226152 6226219 273 + . gene_id "HERVL40_21p12d"; transcript_id "HERVL40_21p12d"; locus "HERVL40_21p12d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0439"; repClass "LTR"; repEnd "3595"; repFamily "ERVL"; repLeft "-1935"; repStart "3528"; ### ERV316A3_21p12 ### chr21 rmsk gene 6849041 6849789 . + . gene_id "ERV316A3_21p12"; transcript_id "ERV316A3_21p12"; locus "ERV316A3_21p12"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2668"; model_cov "731"; model_pct "14.0"; chr21 rmsk exon 6849041 6849185 257 + . gene_id "ERV316A3_21p12"; transcript_id "ERV316A3_21p12"; locus "ERV316A3_21p12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2668"; repClass "LTR"; repEnd "2448"; repFamily "ERVL"; repLeft "-2778"; repStart "2302"; chr21 rmsk exon 6849263 6849789 260 + . gene_id "ERV316A3_21p12"; transcript_id "ERV316A3_21p12"; locus "ERV316A3_21p12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2668"; repClass "LTR"; repEnd "4650"; repFamily "ERVL"; repLeft "-576"; repStart "4065"; ### HERVL40_21p11.2a ### chr21 rmsk gene 7089963 7090638 . - . gene_id "HERVL40_21p11.2a"; transcript_id "HERVL40_21p11.2a"; locus "HERVL40_21p11.2a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0441"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 7089963 7090171 386 - . gene_id "HERVL40_21p11.2a"; transcript_id "HERVL40_21p11.2a"; locus "HERVL40_21p11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0441"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "3298"; repStart "-1921"; chr21 rmsk exon 7090242 7090457 736 - . gene_id "HERVL40_21p11.2a"; transcript_id "HERVL40_21p11.2a"; locus "HERVL40_21p11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0441"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "2942"; repStart "-2370"; chr21 rmsk exon 7090463 7090638 426 - . gene_id "HERVL40_21p11.2a"; transcript_id "HERVL40_21p11.2a"; locus "HERVL40_21p11.2a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0441"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "2580"; repStart "-2760"; ### HERVL66_21p11.2a ### chr21 rmsk gene 7116447 7120268 . - . gene_id "HERVL66_21p11.2a"; transcript_id "HERVL66_21p11.2a"; locus "HERVL66_21p11.2a"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0046"; model_cov "3285"; model_pct "75.9"; chr21 rmsk exon 7116447 7116783 2288 - . gene_id "HERVL66_21p11.2a"; transcript_id "HERVL66_21p11.2a"; locus "HERVL66_21p11.2a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0046"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "1"; repStart "-245"; chr21 rmsk exon 7116784 7118186 5239 - . gene_id "HERVL66_21p11.2a"; transcript_id "HERVL66_21p11.2a"; locus "HERVL66_21p11.2a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0046"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr21 rmsk exon 7118167 7119766 11375 - . gene_id "HERVL66_21p11.2a"; transcript_id "HERVL66_21p11.2a"; locus "HERVL66_21p11.2a"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0046"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "187"; repStart "-2532"; chr21 rmsk exon 7119767 7120268 3570 - . gene_id "HERVL66_21p11.2a"; transcript_id "HERVL66_21p11.2a"; locus "HERVL66_21p11.2a"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0046"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "3"; repStart "-62"; ### HERVL40_21p11.2b ### chr21 rmsk gene 7471741 7472416 . - . gene_id "HERVL40_21p11.2b"; transcript_id "HERVL40_21p11.2b"; locus "HERVL40_21p11.2b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0442"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 7471741 7471949 386 - . gene_id "HERVL40_21p11.2b"; transcript_id "HERVL40_21p11.2b"; locus "HERVL40_21p11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0442"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "3298"; repStart "-1921"; chr21 rmsk exon 7472020 7472235 736 - . gene_id "HERVL40_21p11.2b"; transcript_id "HERVL40_21p11.2b"; locus "HERVL40_21p11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0442"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "2942"; repStart "-2370"; chr21 rmsk exon 7472241 7472416 426 - . gene_id "HERVL40_21p11.2b"; transcript_id "HERVL40_21p11.2b"; locus "HERVL40_21p11.2b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0442"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "2580"; repStart "-2760"; ### HERVL66_21p11.2b ### chr21 rmsk gene 7498225 7500890 . - . gene_id "HERVL66_21p11.2b"; transcript_id "HERVL66_21p11.2b"; locus "HERVL66_21p11.2b"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0047"; model_cov "2628"; model_pct "60.7"; chr21 rmsk exon 7498225 7498561 2284 - . gene_id "HERVL66_21p11.2b"; transcript_id "HERVL66_21p11.2b"; locus "HERVL66_21p11.2b"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0047"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "1"; repStart "-245"; chr21 rmsk exon 7498562 7499964 5242 - . gene_id "HERVL66_21p11.2b"; transcript_id "HERVL66_21p11.2b"; locus "HERVL66_21p11.2b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0047"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr21 rmsk exon 7499945 7500000 288 - . gene_id "HERVL66_21p11.2b"; transcript_id "HERVL66_21p11.2b"; locus "HERVL66_21p11.2b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0047"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1741"; repStart "-2532"; chr21 rmsk exon 7500001 7500890 6490 - . gene_id "HERVL66_21p11.2b"; transcript_id "HERVL66_21p11.2b"; locus "HERVL66_21p11.2b"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0047"; repClass "LTR"; repEnd "1740"; repFamily "ERVL"; repLeft "843"; repStart "-2589"; ### HERVL66_21p11.2c ### chr21 rmsk gene 7559489 7560982 . - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0048"; model_cov "1088"; model_pct "25.1"; chr21 rmsk exon 7559489 7559606 607 - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0048"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "331"; repStart "-171"; chr21 rmsk exon 7559606 7560003 2464 - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0048"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "3"; repStart "-208"; chr21 rmsk exon 7560006 7560216 1004 - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0048"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "4035"; repStart "0"; chr21 rmsk exon 7560215 7560804 3987 - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0048"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "2654"; repStart "-1087"; chr21 rmsk exon 7560785 7560982 1256 - . gene_id "HERVL66_21p11.2c"; transcript_id "HERVL66_21p11.2c"; locus "HERVL66_21p11.2c"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0048"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "1591"; repStart "-2532"; ### HERVL40_21p11.2c ### chr21 rmsk gene 7585022 7586778 . + . gene_id "HERVL40_21p11.2c"; transcript_id "HERVL40_21p11.2c"; locus "HERVL40_21p11.2c"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0443"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 7585022 7585242 419 + . gene_id "HERVL40_21p11.2c"; transcript_id "HERVL40_21p11.2c"; locus "HERVL40_21p11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0443"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "-2718"; repStart "2580"; chr21 rmsk exon 7585260 7585574 512 + . gene_id "HERVL40_21p11.2c"; transcript_id "HERVL40_21p11.2c"; locus "HERVL40_21p11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0443"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "-2367"; repStart "2843"; chr21 rmsk exon 7586616 7586778 511 + . gene_id "HERVL40_21p11.2c"; transcript_id "HERVL40_21p11.2c"; locus "HERVL40_21p11.2c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0443"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1240"; repStart "4123"; ### HERVL66_21p11.2d ### chr21 rmsk gene 7636363 7640184 . + . gene_id "HERVL66_21p11.2d"; transcript_id "HERVL66_21p11.2d"; locus "HERVL66_21p11.2d"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0049"; model_cov "3285"; model_pct "75.9"; chr21 rmsk exon 7636363 7636864 3570 + . gene_id "HERVL66_21p11.2d"; transcript_id "HERVL66_21p11.2d"; locus "HERVL66_21p11.2d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0049"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "-62"; repStart "3"; chr21 rmsk exon 7636865 7638464 11375 + . gene_id "HERVL66_21p11.2d"; transcript_id "HERVL66_21p11.2d"; locus "HERVL66_21p11.2d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0049"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "187"; chr21 rmsk exon 7638445 7639847 5239 + . gene_id "HERVL66_21p11.2d"; transcript_id "HERVL66_21p11.2d"; locus "HERVL66_21p11.2d"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0049"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chr21 rmsk exon 7639848 7640184 2288 + . gene_id "HERVL66_21p11.2d"; transcript_id "HERVL66_21p11.2d"; locus "HERVL66_21p11.2d"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0049"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "-245"; repStart "1"; ### HERVL40_21p11.2d ### chr21 rmsk gene 7665989 7666664 . + . gene_id "HERVL40_21p11.2d"; transcript_id "HERVL40_21p11.2d"; locus "HERVL40_21p11.2d"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0444"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 7665989 7666164 426 + . gene_id "HERVL40_21p11.2d"; transcript_id "HERVL40_21p11.2d"; locus "HERVL40_21p11.2d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0444"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "-2760"; repStart "2580"; chr21 rmsk exon 7666170 7666385 742 + . gene_id "HERVL40_21p11.2d"; transcript_id "HERVL40_21p11.2d"; locus "HERVL40_21p11.2d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0444"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "-2370"; repStart "2942"; chr21 rmsk exon 7666456 7666664 383 + . gene_id "HERVL40_21p11.2d"; transcript_id "HERVL40_21p11.2d"; locus "HERVL40_21p11.2d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0444"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "-1921"; repStart "3298"; ### HERVL40_21p11.2e ### chr21 rmsk gene 8135769 8137525 . - . gene_id "HERVL40_21p11.2e"; transcript_id "HERVL40_21p11.2e"; locus "HERVL40_21p11.2e"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0445"; model_cov "719"; model_pct "13.0"; chr21 rmsk exon 8135769 8135931 511 - . gene_id "HERVL40_21p11.2e"; transcript_id "HERVL40_21p11.2e"; locus "HERVL40_21p11.2e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0445"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chr21 rmsk exon 8136973 8137287 512 - . gene_id "HERVL40_21p11.2e"; transcript_id "HERVL40_21p11.2e"; locus "HERVL40_21p11.2e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0445"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2843"; repStart "-2367"; chr21 rmsk exon 8137305 8137525 419 - . gene_id "HERVL40_21p11.2e"; transcript_id "HERVL40_21p11.2e"; locus "HERVL40_21p11.2e"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0445"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2580"; repStart "-2718"; ### HERVL66_21p11.2e ### chr21 rmsk gene 8161565 8163058 . + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0050"; model_cov "1088"; model_pct "25.1"; chr21 rmsk exon 8161565 8161762 1256 + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0050"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1591"; chr21 rmsk exon 8161743 8162332 3987 + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0050"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2654"; chr21 rmsk exon 8162331 8162541 1004 + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0050"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chr21 rmsk exon 8162544 8162941 2464 + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0050"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "3"; chr21 rmsk exon 8162941 8163058 607 + . gene_id "HERVL66_21p11.2e"; transcript_id "HERVL66_21p11.2e"; locus "HERVL66_21p11.2e"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0050"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-171"; repStart "331"; ### ERVLB4_21p11.2a ### chr21 rmsk gene 8191768 8192514 . - . gene_id "ERVLB4_21p11.2a"; transcript_id "ERVLB4_21p11.2a"; locus "ERVLB4_21p11.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1712"; model_cov "752"; model_pct "13.2"; chr21 rmsk exon 8191768 8192514 3120 - . gene_id "ERVLB4_21p11.2a"; transcript_id "ERVLB4_21p11.2a"; locus "ERVLB4_21p11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1712"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### HERVL40_21p11.2f ### chr21 rmsk gene 8318814 8320570 . - . gene_id "HERVL40_21p11.2f"; transcript_id "HERVL40_21p11.2f"; locus "HERVL40_21p11.2f"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0446"; model_cov "750"; model_pct "13.6"; chr21 rmsk exon 8318814 8318976 563 - . gene_id "HERVL40_21p11.2f"; transcript_id "HERVL40_21p11.2f"; locus "HERVL40_21p11.2f"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0446"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chr21 rmsk exon 8320018 8320570 598 - . gene_id "HERVL40_21p11.2f"; transcript_id "HERVL40_21p11.2f"; locus "HERVL40_21p11.2f"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0446"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2580"; repStart "-2367"; ### HERVL66_21p11.2f ### chr21 rmsk gene 8344610 8346103 . + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0051"; model_cov "1094"; model_pct "25.3"; chr21 rmsk exon 8344610 8344807 1357 + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0051"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1591"; chr21 rmsk exon 8344779 8345377 4278 + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0051"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2648"; chr21 rmsk exon 8345376 8345586 1074 + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0051"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chr21 rmsk exon 8345589 8345986 2657 + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0051"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "3"; chr21 rmsk exon 8345986 8346103 659 + . gene_id "HERVL66_21p11.2f"; transcript_id "HERVL66_21p11.2f"; locus "HERVL66_21p11.2f"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0051"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-171"; repStart "331"; ### ERVLB4_21p11.2b ### chr21 rmsk gene 8374813 8375559 . - . gene_id "ERVLB4_21p11.2b"; transcript_id "ERVLB4_21p11.2b"; locus "ERVLB4_21p11.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1713"; model_cov "752"; model_pct "13.2"; chr21 rmsk exon 8374813 8375559 3209 - . gene_id "ERVLB4_21p11.2b"; transcript_id "ERVLB4_21p11.2b"; locus "ERVLB4_21p11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1713"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### HERVL_21p11.2 ### chr21 rmsk gene 8703256 8706715 . - . gene_id "HERVL_21p11.2"; transcript_id "HERVL_21p11.2"; locus "HERVL_21p11.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1225"; model_cov "3152"; model_pct "55.7"; chr21 rmsk exon 8703256 8703639 2756 - . gene_id "HERVL_21p11.2"; transcript_id "HERVL_21p11.2"; locus "HERVL_21p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1225"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr21 rmsk exon 8703640 8706071 14166 - . gene_id "HERVL_21p11.2"; transcript_id "HERVL_21p11.2"; locus "HERVL_21p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1225"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr21 rmsk exon 8706065 8706562 3577 - . gene_id "HERVL_21p11.2"; transcript_id "HERVL_21p11.2"; locus "HERVL_21p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1225"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr21 rmsk exon 8706552 8706715 1065 - . gene_id "HERVL_21p11.2"; transcript_id "HERVL_21p11.2"; locus "HERVL_21p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1225"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "100"; repStart "-5391"; ### HML3_21p11.2a ### chr21 rmsk gene 9150476 9154294 . - . gene_id "HML3_21p11.2a"; transcript_id "HML3_21p11.2a"; locus "HML3_21p11.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0232"; model_cov "3346"; model_pct "55.6"; chr21 rmsk exon 9150476 9150799 2197 - . gene_id "HML3_21p11.2a"; transcript_id "HML3_21p11.2a"; locus "HML3_21p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0232"; repClass "LTR"; repEnd "4915"; repFamily "ERVK"; repLeft "4595"; repStart "-1106"; chr21 rmsk exon 9150801 9151030 1744 - . gene_id "HML3_21p11.2a"; transcript_id "HML3_21p11.2a"; locus "HML3_21p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0232"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr21 rmsk exon 9151031 9153837 20667 - . gene_id "HML3_21p11.2a"; transcript_id "HML3_21p11.2a"; locus "HML3_21p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0232"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr21 rmsk exon 9153838 9154294 3270 - . gene_id "HML3_21p11.2a"; transcript_id "HML3_21p11.2a"; locus "HML3_21p11.2a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0232"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_21p11.2a ### chr21 rmsk gene 9154295 9156353 . - . gene_id "HML1_21p11.2a"; transcript_id "HML1_21p11.2a"; locus "HML1_21p11.2a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0118"; model_cov "1786"; model_pct "29.3"; chr21 rmsk exon 9154295 9155978 12300 - . gene_id "HML1_21p11.2a"; transcript_id "HML1_21p11.2a"; locus "HML1_21p11.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0118"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "204"; repStart "-4207"; chr21 rmsk exon 9155973 9156073 619 - . gene_id "HML1_21p11.2a"; transcript_id "HML1_21p11.2a"; locus "HML1_21p11.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0118"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "1"; repStart "-5994"; chr21 rmsk exon 9156074 9156353 1914 - . gene_id "HML1_21p11.2a"; transcript_id "HML1_21p11.2a"; locus "HML1_21p11.2a"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0118"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_21p11.2b ### chr21 rmsk gene 9298495 9300556 . + . gene_id "HML1_21p11.2b"; transcript_id "HML1_21p11.2b"; locus "HML1_21p11.2b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0119"; model_cov "1888"; model_pct "31.0"; chr21 rmsk exon 9298495 9298778 1991 + . gene_id "HML1_21p11.2b"; transcript_id "HML1_21p11.2b"; locus "HML1_21p11.2b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0119"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr21 rmsk exon 9298779 9300556 12321 + . gene_id "HML1_21p11.2b"; transcript_id "HML1_21p11.2b"; locus "HML1_21p11.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0119"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "1"; ### HML3_21p11.2b ### chr21 rmsk gene 9300557 9304363 . + . gene_id "HML3_21p11.2b"; transcript_id "HML3_21p11.2b"; locus "HML3_21p11.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0233"; model_cov "3347"; model_pct "55.6"; chr21 rmsk exon 9300557 9301003 3506 + . gene_id "HML3_21p11.2b"; transcript_id "HML3_21p11.2b"; locus "HML3_21p11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0233"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr21 rmsk exon 9301004 9303807 20795 + . gene_id "HML3_21p11.2b"; transcript_id "HML3_21p11.2b"; locus "HML3_21p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0233"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr21 rmsk exon 9303808 9304037 1871 + . gene_id "HML3_21p11.2b"; transcript_id "HML3_21p11.2b"; locus "HML3_21p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0233"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr21 rmsk exon 9304039 9304363 2135 + . gene_id "HML3_21p11.2b"; transcript_id "HML3_21p11.2b"; locus "HML3_21p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0233"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### HERVL32_21p11.2 ### chr21 rmsk gene 9749613 9752534 . - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0053"; model_cov "1786"; model_pct "52.3"; chr21 rmsk exon 9749613 9749792 1080 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "271"; repStart "-5"; chr21 rmsk exon 9749807 9749860 292 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "2"; repStart "-407"; chr21 rmsk exon 9749868 9750046 527 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "3414"; repFamily "ERVL"; repLeft "3222"; repStart "-4"; chr21 rmsk exon 9750171 9750330 444 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "2351"; repStart "-869"; chr21 rmsk exon 9750440 9750782 725 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "955"; repStart "-2107"; chr21 rmsk exon 9750794 9751168 1174 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "666"; repStart "-2380"; chr21 rmsk exon 9751234 9751917 2258 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "52"; repStart "-2698"; chr21 rmsk exon 9752351 9752534 900 - . gene_id "HERVL32_21p11.2"; transcript_id "HERVL32_21p11.2"; locus "HERVL32_21p11.2"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0053"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "271"; repStart "-1"; ### HERVH_21p11.2 ### chr21 rmsk gene 9847516 9850363 . + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1198"; model_cov "1970"; model_pct "25.5"; chr21 rmsk exon 9847516 9847905 2380 + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1198"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 9847913 9848029 733 + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1198"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "-4988"; repStart "2613"; chr21 rmsk exon 9848032 9849529 7206 + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1198"; repClass "LTR"; repEnd "5010"; repFamily "ERV1"; repLeft "-2703"; repStart "3582"; chr21 rmsk exon 9849543 9849969 2811 + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1198"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chr21 rmsk exon 9849970 9850363 2343 + . gene_id "HERVH_21p11.2"; transcript_id "HERVH_21p11.2"; locus "HERVH_21p11.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1198"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR25_21p11.2 ### chr21 rmsk gene 9944264 9949759 . - . gene_id "LTR25_21p11.2"; transcript_id "LTR25_21p11.2"; locus "LTR25_21p11.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0136"; model_cov "5973"; model_pct "83.1"; chr21 rmsk exon 9944264 9947004 16679 - . gene_id "LTR25_21p11.2"; transcript_id "LTR25_21p11.2"; locus "LTR25_21p11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0136"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "4502"; repStart "-2"; chr21 rmsk exon 9947370 9948820 16679 - . gene_id "LTR25_21p11.2"; transcript_id "LTR25_21p11.2"; locus "LTR25_21p11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0136"; repClass "LTR"; repEnd "6883"; repFamily "ERV1"; repLeft "4252"; repStart "-305"; chr21 rmsk exon 9949132 9949759 2858 - . gene_id "LTR25_21p11.2"; transcript_id "LTR25_21p11.2"; locus "LTR25_21p11.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0136"; repClass "LTR"; repEnd "6835"; repFamily "ERV1"; repLeft "6177"; repStart "-353"; ### ERVLE_21p11.2 ### chr21 rmsk gene 10330456 10332299 . - . gene_id "ERVLE_21p11.2"; transcript_id "ERVLE_21p11.2"; locus "ERVLE_21p11.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3509"; model_cov "689"; model_pct "12.2"; chr21 rmsk exon 10330456 10330628 471 - . gene_id "ERVLE_21p11.2"; transcript_id "ERVLE_21p11.2"; locus "ERVLE_21p11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3509"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "4838"; repStart "-648"; chr21 rmsk exon 10331811 10332299 1579 - . gene_id "ERVLE_21p11.2"; transcript_id "ERVLE_21p11.2"; locus "ERVLE_21p11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3509"; repClass "LTR"; repEnd "4695"; repFamily "ERVL"; repLeft "4187"; repStart "-972"; ### ERV316A3_21q11.2a ### chr21 rmsk gene 13004717 13005970 . - . gene_id "ERV316A3_21q11.2a"; transcript_id "ERV316A3_21q11.2a"; locus "ERV316A3_21q11.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2669"; model_cov "732"; model_pct "14.0"; chr21 rmsk exon 13004717 13004946 655 - . gene_id "ERV316A3_21q11.2a"; transcript_id "ERV316A3_21q11.2a"; locus "ERV316A3_21q11.2a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2669"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "179"; repStart "-7"; chr21 rmsk exon 13005174 13005303 415 - . gene_id "ERV316A3_21q11.2a"; transcript_id "ERV316A3_21q11.2a"; locus "ERV316A3_21q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2669"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "5069"; repStart "-28"; chr21 rmsk exon 13005425 13005970 2229 - . gene_id "ERV316A3_21q11.2a"; transcript_id "ERV316A3_21q11.2a"; locus "ERV316A3_21q11.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2669"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "4214"; repStart "-409"; ### ERV316A3_21q11.2b ### chr21 rmsk gene 13006024 13007231 . - . gene_id "ERV316A3_21q11.2b"; transcript_id "ERV316A3_21q11.2b"; locus "ERV316A3_21q11.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2670"; model_cov "1338"; model_pct "25.6"; chr21 rmsk exon 13006024 13007231 2229 - . gene_id "ERV316A3_21q11.2b"; transcript_id "ERV316A3_21q11.2b"; locus "ERV316A3_21q11.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2670"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "3479"; repStart "-409"; ### HERVIP10F_21q11.2a ### chr21 rmsk gene 13051962 13060559 . + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0119"; model_cov "7124"; model_pct "92.1"; chr21 rmsk exon 13051962 13052475 2294 + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0119"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "3"; chr21 rmsk exon 13052514 13054405 18922 + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0119"; repClass "LTR"; repEnd "1902"; repFamily "ERV1"; repLeft "-5835"; repStart "-22"; chr21 rmsk exon 13054701 13058061 19280 + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0119"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "-2635"; repStart "1828"; chr21 rmsk exon 13058054 13059981 11963 + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0119"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "-7"; repStart "5804"; chr21 rmsk exon 13060059 13060559 2451 + . gene_id "HERVIP10F_21q11.2a"; transcript_id "HERVIP10F_21q11.2a"; locus "HERVIP10F_21q11.2a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0119"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### HERVL_21q11.2 ### chr21 rmsk gene 13323434 13329898 . - . gene_id "HERVL_21q11.2"; transcript_id "HERVL_21q11.2"; locus "HERVL_21q11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1227"; model_cov "5639"; model_pct "99.7"; chr21 rmsk exon 13323434 13323816 2482 - . gene_id "HERVL_21q11.2"; transcript_id "HERVL_21q11.2"; locus "HERVL_21q11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1227"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 13323830 13329449 41190 - . gene_id "HERVL_21q11.2"; transcript_id "HERVL_21q11.2"; locus "HERVL_21q11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1227"; repClass "LTR"; repEnd "5640"; repFamily "ERVL"; repLeft "1"; repStart "-14"; chr21 rmsk exon 13329450 13329898 3154 - . gene_id "HERVL_21q11.2"; transcript_id "HERVL_21q11.2"; locus "HERVL_21q11.2"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1227"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_21q11.2 ### chr21 rmsk gene 13330724 13332975 . - . gene_id "ERVLB4_21q11.2"; transcript_id "ERVLB4_21q11.2"; locus "ERVLB4_21q11.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1716"; model_cov "1401"; model_pct "24.5"; chr21 rmsk exon 13330724 13331155 1822 - . gene_id "ERVLB4_21q11.2"; transcript_id "ERVLB4_21q11.2"; locus "ERVLB4_21q11.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1716"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "-63"; chr21 rmsk exon 13331198 13332023 4498 - . gene_id "ERVLB4_21q11.2"; transcript_id "ERVLB4_21q11.2"; locus "ERVLB4_21q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1716"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "4650"; repStart "-228"; chr21 rmsk exon 13332020 13332558 2462 - . gene_id "ERVLB4_21q11.2"; transcript_id "ERVLB4_21q11.2"; locus "ERVLB4_21q11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1716"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "5"; repStart "-5144"; chr21 rmsk exon 13332603 13332975 1078 - . gene_id "ERVLB4_21q11.2"; transcript_id "ERVLB4_21q11.2"; locus "ERVLB4_21q11.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1716"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-116"; ### HERVIP10F_21q11.2b ### chr21 rmsk gene 13538460 13542354 . - . gene_id "HERVIP10F_21q11.2b"; transcript_id "HERVIP10F_21q11.2b"; locus "HERVIP10F_21q11.2b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0120"; model_cov "5359"; model_pct "69.3"; chr21 rmsk exon 13538460 13538994 2739 - . gene_id "HERVIP10F_21q11.2b"; transcript_id "HERVIP10F_21q11.2b"; locus "HERVIP10F_21q11.2b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0120"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "1"; repStart "-62"; chr21 rmsk exon 13539040 13542354 17018 - . gene_id "HERVIP10F_21q11.2b"; transcript_id "HERVIP10F_21q11.2b"; locus "HERVIP10F_21q11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0120"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "2378"; repStart "0"; ### MER4_21q11.2 ### chr21 rmsk gene 13646305 13647252 . + . gene_id "MER4_21q11.2"; transcript_id "MER4_21q11.2"; locus "MER4_21q11.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0779"; model_cov "999"; model_pct "15.1"; chr21 rmsk exon 13646305 13646410 438 + . gene_id "MER4_21q11.2"; transcript_id "MER4_21q11.2"; locus "MER4_21q11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0779"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "-6438"; repStart "29"; chr21 rmsk exon 13646484 13647252 1204 + . gene_id "MER4_21q11.2"; transcript_id "MER4_21q11.2"; locus "MER4_21q11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0779"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "-5501"; repStart "229"; ### ERVLE_21q11.2 ### chr21 rmsk gene 13714065 13714813 . + . gene_id "ERVLE_21q11.2"; transcript_id "ERVLE_21q11.2"; locus "ERVLE_21q11.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3510"; model_cov "731"; model_pct "12.9"; chr21 rmsk exon 13714065 13714209 257 + . gene_id "ERVLE_21q11.2"; transcript_id "ERVLE_21q11.2"; locus "ERVLE_21q11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3510"; repClass "LTR"; repEnd "2889"; repFamily "ERVL"; repLeft "-2778"; repStart "2743"; chr21 rmsk exon 13714287 13714813 252 + . gene_id "ERVLE_21q11.2"; transcript_id "ERVLE_21q11.2"; locus "ERVLE_21q11.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3510"; repClass "LTR"; repEnd "5091"; repFamily "ERVL"; repLeft "-576"; repStart "4506"; ### HUERSP1_21q11.2 ### chr21 rmsk gene 14807788 14810306 . + . gene_id "HUERSP1_21q11.2"; transcript_id "HUERSP1_21q11.2"; locus "HUERSP1_21q11.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0206"; model_cov "1683"; model_pct "26.9"; chr21 rmsk exon 14807788 14807944 11381 + . gene_id "HUERSP1_21q11.2"; transcript_id "HUERSP1_21q11.2"; locus "HUERSP1_21q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0206"; repClass "LTR"; repEnd "4733"; repFamily "ERV1"; repLeft "-1530"; repStart "4579"; chr21 rmsk exon 14808203 14809730 11381 + . gene_id "HUERSP1_21q11.2"; transcript_id "HUERSP1_21q11.2"; locus "HUERSP1_21q11.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0206"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "4734"; chr21 rmsk exon 14809731 14810306 4155 + . gene_id "HUERSP1_21q11.2"; transcript_id "HUERSP1_21q11.2"; locus "HUERSP1_21q11.2"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0206"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-104"; repStart "1"; ### HERVL_21q21.1a ### chr21 rmsk gene 15576516 15583085 . + . gene_id "HERVL_21q21.1a"; transcript_id "HERVL_21q21.1a"; locus "HERVL_21q21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1228"; model_cov "5653"; model_pct "100.0"; chr21 rmsk exon 15576516 15576960 3305 + . gene_id "HERVL_21q21.1a"; transcript_id "HERVL_21q21.1a"; locus "HERVL_21q21.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1228"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr21 rmsk exon 15576961 15582627 41668 + . gene_id "HERVL_21q21.1a"; transcript_id "HERVL_21q21.1a"; locus "HERVL_21q21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1228"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr21 rmsk exon 15582629 15583085 2899 + . gene_id "HERVL_21q21.1a"; transcript_id "HERVL_21q21.1a"; locus "HERVL_21q21.1a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1228"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### HERVL_21q21.1b ### chr21 rmsk gene 15633992 15637297 . - . gene_id "HERVL_21q21.1b"; transcript_id "HERVL_21q21.1b"; locus "HERVL_21q21.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1229"; model_cov "2853"; model_pct "50.5"; chr21 rmsk exon 15633992 15636831 22179 - . gene_id "HERVL_21q21.1b"; transcript_id "HERVL_21q21.1b"; locus "HERVL_21q21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1229"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "3"; repStart "-2798"; chr21 rmsk exon 15636834 15637297 2868 - . gene_id "HERVL_21q21.1b"; transcript_id "HERVL_21q21.1b"; locus "HERVL_21q21.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1229"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL40_21q21.1a ### chr21 rmsk gene 15780821 15781416 . - . gene_id "HERVL40_21q21.1a"; transcript_id "HERVL40_21q21.1a"; locus "HERVL40_21q21.1a"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0447"; model_cov "638"; model_pct "11.5"; chr21 rmsk exon 15780821 15781416 1546 - . gene_id "HERVL40_21q21.1a"; transcript_id "HERVL40_21q21.1a"; locus "HERVL40_21q21.1a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0447"; repClass "LTR"; repEnd "4022"; repFamily "ERVL"; repLeft "3384"; repStart "-1508"; ### HERVH_21q21.1a ### chr21 rmsk gene 15979610 15985359 . - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1199"; model_cov "5113"; model_pct "66.3"; chr21 rmsk exon 15979610 15980065 3011 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr21 rmsk exon 15980066 15980437 2275 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr21 rmsk exon 15980438 15980662 1492 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr21 rmsk exon 15980664 15981277 3090 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr21 rmsk exon 15981280 15982128 5731 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr21 rmsk exon 15982115 15984900 15288 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr21 rmsk exon 15984903 15985359 2989 - . gene_id "HERVH_21q21.1a"; transcript_id "HERVH_21q21.1a"; locus "HERVH_21q21.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1199"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_21q21.1b ### chr21 rmsk gene 16391958 16398534 . - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1200"; model_cov "4199"; model_pct "54.4"; chr21 rmsk exon 16391958 16392555 2452 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr21 rmsk exon 16392556 16393098 3416 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7173"; repStart "0"; chr21 rmsk exon 16393153 16393297 950 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6803"; repStart "-765"; chr21 rmsk exon 16394132 16394457 1696 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "6815"; repFamily "ERV1"; repLeft "6489"; repStart "-898"; chr21 rmsk exon 16394458 16396252 6773 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "2790"; repStart "-3184"; chr21 rmsk exon 16396227 16397723 8535 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "2438"; repFamily "ERV1"; repLeft "989"; repStart "-5275"; chr21 rmsk exon 16397734 16398534 2039 - . gene_id "HERVH_21q21.1b"; transcript_id "HERVH_21q21.1b"; locus "HERVH_21q21.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1200"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_21q21.1a ### chr21 rmsk gene 16806462 16808102 . + . gene_id "ERV316A3_21q21.1a"; transcript_id "ERV316A3_21q21.1a"; locus "ERV316A3_21q21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2672"; model_cov "1194"; model_pct "22.8"; chr21 rmsk exon 16806462 16807661 2341 + . gene_id "ERV316A3_21q21.1a"; transcript_id "ERV316A3_21q21.1a"; locus "ERV316A3_21q21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2672"; repClass "LTR"; repEnd "5217"; repFamily "ERVL"; repLeft "-9"; repStart "4023"; chr21 rmsk exon 16807716 16808102 846 + . gene_id "ERV316A3_21q21.1a"; transcript_id "ERV316A3_21q21.1a"; locus "ERV316A3_21q21.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2672"; repClass "LTR"; repEnd "424"; repFamily "ERVL"; repLeft "-27"; repStart "34"; ### ERV316A3_21q21.1b ### chr21 rmsk gene 16826585 16827989 . + . gene_id "ERV316A3_21q21.1b"; transcript_id "ERV316A3_21q21.1b"; locus "ERV316A3_21q21.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2674"; model_cov "934"; model_pct "17.9"; chr21 rmsk exon 16826585 16826673 254 + . gene_id "ERV316A3_21q21.1b"; transcript_id "ERV316A3_21q21.1b"; locus "ERV316A3_21q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2674"; repClass "LTR"; repEnd "2687"; repFamily "ERVL"; repLeft "-2539"; repStart "2598"; chr21 rmsk exon 16827168 16827989 1278 + . gene_id "ERV316A3_21q21.1b"; transcript_id "ERV316A3_21q21.1b"; locus "ERV316A3_21q21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2674"; repClass "LTR"; repEnd "4440"; repFamily "ERVL"; repLeft "-786"; repStart "3595"; ### HERVH_21q21.1c ### chr21 rmsk gene 16892210 16898240 . + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1201"; model_cov "5264"; model_pct "68.2"; chr21 rmsk exon 16892210 16892611 2531 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr21 rmsk exon 16892614 16896580 27696 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr21 rmsk exon 16896583 16897245 4164 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr21 rmsk exon 16897243 16897461 1370 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chr21 rmsk exon 16897462 16897836 2254 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr21 rmsk exon 16897837 16898240 2507 + . gene_id "HERVH_21q21.1c"; transcript_id "HERVH_21q21.1c"; locus "HERVH_21q21.1c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1201"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_21q21.1a ### chr21 rmsk gene 16908066 16909251 . - . gene_id "ERVLE_21q21.1a"; transcript_id "ERVLE_21q21.1a"; locus "ERVLE_21q21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3513"; model_cov "1237"; model_pct "21.8"; chr21 rmsk exon 16908066 16908727 1814 - . gene_id "ERVLE_21q21.1a"; transcript_id "ERVLE_21q21.1a"; locus "ERVLE_21q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3513"; repClass "LTR"; repEnd "5133"; repFamily "ERVL"; repLeft "4425"; repStart "-534"; chr21 rmsk exon 16908719 16908948 901 - . gene_id "ERVLE_21q21.1a"; transcript_id "ERVLE_21q21.1a"; locus "ERVLE_21q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3513"; repClass "LTR"; repEnd "4307"; repFamily "ERVL"; repLeft "4075"; repStart "-1360"; chr21 rmsk exon 16909030 16909251 445 - . gene_id "ERVLE_21q21.1a"; transcript_id "ERVLE_21q21.1a"; locus "ERVLE_21q21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3513"; repClass "LTR"; repEnd "3932"; repFamily "ERVL"; repLeft "3635"; repStart "-1735"; ### HERVH_21q21.1d ### chr21 rmsk gene 16914128 16919898 . + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1202"; model_cov "5118"; model_pct "66.4"; chr21 rmsk exon 16914128 16914528 2507 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr21 rmsk exon 16914531 16917409 15798 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr21 rmsk exon 16917389 16918239 6225 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr21 rmsk exon 16918242 16918905 4325 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr21 rmsk exon 16918907 16919118 1280 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr21 rmsk exon 16919117 16919495 2346 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr21 rmsk exon 16919496 16919898 2540 + . gene_id "HERVH_21q21.1d"; transcript_id "HERVH_21q21.1d"; locus "HERVH_21q21.1d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1202"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_21q21.1b ### chr21 rmsk gene 16932325 16933112 . - . gene_id "ERVLE_21q21.1b"; transcript_id "ERVLE_21q21.1b"; locus "ERVLE_21q21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3514"; model_cov "922"; model_pct "16.3"; chr21 rmsk exon 16932325 16932977 1524 - . gene_id "ERVLE_21q21.1b"; transcript_id "ERVLE_21q21.1b"; locus "ERVLE_21q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3514"; repClass "LTR"; repEnd "3497"; repFamily "ERVL"; repLeft "2716"; repStart "-2170"; chr21 rmsk exon 16932975 16933112 353 - . gene_id "ERVLE_21q21.1b"; transcript_id "ERVLE_21q21.1b"; locus "ERVLE_21q21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3514"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "2661"; repStart "-2865"; ### HERVH_21q21.1e ### chr21 rmsk gene 17121441 17127757 . + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1203"; model_cov "5624"; model_pct "72.9"; chr21 rmsk exon 17121441 17121891 3618 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr21 rmsk exon 17121894 17124911 18728 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chr21 rmsk exon 17124891 17125034 748 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr21 rmsk exon 17125025 17126751 7750 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4551"; chr21 rmsk exon 17126753 17126968 1339 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr21 rmsk exon 17126969 17127347 2365 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr21 rmsk exon 17127348 17127757 2835 + . gene_id "HERVH_21q21.1e"; transcript_id "HERVH_21q21.1e"; locus "HERVH_21q21.1e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1203"; repClass "LTR"; repEnd "408"; repFamily "ERV1"; repLeft "-42"; repStart "1"; ### HERV9_21q21.1 ### chr21 rmsk gene 17296932 17306851 . + . gene_id "HERV9_21q21.1"; transcript_id "HERV9_21q21.1"; locus "HERV9_21q21.1"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0182"; model_cov "8375"; model_pct "99.3"; chr21 rmsk exon 17296932 17297357 2818 + . gene_id "HERV9_21q21.1"; transcript_id "HERV9_21q21.1"; locus "HERV9_21q21.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0182"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 17297378 17305440 61827 + . gene_id "HERV9_21q21.1"; transcript_id "HERV9_21q21.1"; locus "HERV9_21q21.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0182"; repClass "LTR"; repEnd "8168"; repFamily "ERV1"; repLeft "-268"; repStart "55"; chr21 rmsk exon 17306192 17306465 61827 + . gene_id "HERV9_21q21.1"; transcript_id "HERV9_21q21.1"; locus "HERV9_21q21.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0182"; repClass "LTR"; repEnd "8431"; repFamily "ERV1"; repLeft "-5"; repStart "8169"; chr21 rmsk exon 17306470 17306851 2236 + . gene_id "HERV9_21q21.1"; transcript_id "HERV9_21q21.1"; locus "HERV9_21q21.1"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0182"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_21q21.1c ### chr21 rmsk gene 17339489 17342978 . - . gene_id "HERVL_21q21.1c"; transcript_id "HERVL_21q21.1c"; locus "HERVL_21q21.1c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1230"; model_cov "2591"; model_pct "45.8"; chr21 rmsk exon 17339489 17339932 3032 - . gene_id "HERVL_21q21.1c"; transcript_id "HERVL_21q21.1c"; locus "HERVL_21q21.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1230"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 17339933 17342517 19072 - . gene_id "HERVL_21q21.1c"; transcript_id "HERVL_21q21.1c"; locus "HERVL_21q21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1230"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3063"; repStart "0"; chr21 rmsk exon 17342532 17342978 3128 - . gene_id "HERVL_21q21.1c"; transcript_id "HERVL_21q21.1c"; locus "HERVL_21q21.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1230"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_21q21.1c ### chr21 rmsk gene 17357900 17362433 . - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3515"; model_cov "1835"; model_pct "32.4"; chr21 rmsk exon 17357900 17358217 484 - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3515"; repClass "LTR"; repEnd "4773"; repFamily "ERVL"; repLeft "4440"; repStart "-894"; chr21 rmsk exon 17359754 17360112 1611 - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3515"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "4020"; repStart "-1289"; chr21 rmsk exon 17360540 17360925 1611 - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3515"; repClass "LTR"; repEnd "4019"; repFamily "ERVL"; repLeft "3580"; repStart "-1648"; chr21 rmsk exon 17361219 17361561 1611 - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3515"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "3213"; repStart "-2088"; chr21 rmsk exon 17362125 17362433 1611 - . gene_id "ERVLE_21q21.1c"; transcript_id "ERVLE_21q21.1c"; locus "ERVLE_21q21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3515"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "2870"; repStart "-2458"; ### ERVLE_21q21.1d ### chr21 rmsk gene 17858749 17862749 . + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3516"; model_cov "1671"; model_pct "29.5"; chr21 rmsk exon 17858749 17858892 288 + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3516"; repClass "LTR"; repEnd "533"; repFamily "ERVL"; repLeft "-5134"; repStart "392"; chr21 rmsk exon 17859690 17859904 305 + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3516"; repClass "LTR"; repEnd "1107"; repFamily "ERVL"; repLeft "-4560"; repStart "819"; chr21 rmsk exon 17861337 17861969 1719 + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3516"; repClass "LTR"; repEnd "4015"; repFamily "ERVL"; repLeft "-1652"; repStart "3355"; chr21 rmsk exon 17862145 17862295 435 + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3516"; repClass "LTR"; repEnd "4471"; repFamily "ERVL"; repLeft "-1196"; repStart "4316"; chr21 rmsk exon 17862336 17862749 652 + . gene_id "ERVLE_21q21.1d"; transcript_id "ERVLE_21q21.1d"; locus "ERVLE_21q21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3516"; repClass "LTR"; repEnd "4961"; repFamily "ERVL"; repLeft "-706"; repStart "4534"; ### ERVL_21q21.1a ### chr21 rmsk gene 17869475 17870791 . - . gene_id "ERVL_21q21.1a"; transcript_id "ERVL_21q21.1a"; locus "ERVL_21q21.1a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0447"; model_cov "1256"; model_pct "21.8"; chr21 rmsk exon 17869475 17870039 2756 - . gene_id "ERVL_21q21.1a"; transcript_id "ERVL_21q21.1a"; locus "ERVL_21q21.1a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0447"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 17870040 17870791 2270 - . gene_id "ERVL_21q21.1a"; transcript_id "ERVL_21q21.1a"; locus "ERVL_21q21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0447"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4501"; repStart "0"; ### ERVLB4_21q21.1a ### chr21 rmsk gene 17870787 17875770 . - . gene_id "ERVLB4_21q21.1a"; transcript_id "ERVLB4_21q21.1a"; locus "ERVLB4_21q21.1a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1718"; model_cov "3441"; model_pct "60.2"; chr21 rmsk exon 17870787 17872994 11627 - . gene_id "ERVLB4_21q21.1a"; transcript_id "ERVLB4_21q21.1a"; locus "ERVLB4_21q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1718"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "1116"; repStart "-2281"; chr21 rmsk exon 17874097 17875250 5716 - . gene_id "ERVLB4_21q21.1a"; transcript_id "ERVLB4_21q21.1a"; locus "ERVLB4_21q21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1718"; repClass "LTR"; repEnd "1125"; repFamily "ERVL"; repLeft "1"; repStart "-4589"; chr21 rmsk exon 17875256 17875770 2505 - . gene_id "ERVLB4_21q21.1a"; transcript_id "ERVLB4_21q21.1a"; locus "ERVLB4_21q21.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1718"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "-5"; ### ERVLE_21q21.1e ### chr21 rmsk gene 18105730 18108406 . + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3518"; model_cov "1928"; model_pct "34.0"; chr21 rmsk exon 18105730 18106483 2142 + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3518"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "-3778"; repStart "1147"; chr21 rmsk exon 18106795 18107395 2142 + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3518"; repClass "LTR"; repEnd "2537"; repFamily "ERVL"; repLeft "-3130"; repStart "1890"; chr21 rmsk exon 18107655 18107740 256 + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3518"; repClass "LTR"; repEnd "3770"; repFamily "ERVL"; repLeft "-1897"; repStart "3686"; chr21 rmsk exon 18107985 18108124 386 + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3518"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "-1231"; repStart "4289"; chr21 rmsk exon 18108190 18108406 334 + . gene_id "ERVLE_21q21.1e"; transcript_id "ERVLE_21q21.1e"; locus "ERVLE_21q21.1e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3518"; repClass "LTR"; repEnd "4796"; repFamily "ERVL"; repLeft "-871"; repStart "4488"; ### HML2_21q21.1 ### chr21 rmsk gene 18561341 18569644 . - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0121"; model_cov "6986"; model_pct "92.7"; chr21 rmsk exon 18561341 18561597 2222 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "257"; repFamily "ERVK"; repLeft "1"; repStart "-711"; chr21 rmsk exon 18561693 18563304 14060 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr21 rmsk exon 18563304 18568678 45482 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "163"; repStart "-2002"; chr21 rmsk exon 18568679 18569644 8533 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "1"; repStart "-2"; ### ERVLB4_21q21.1b ### chr21 rmsk gene 18688509 18690835 . + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1719"; model_cov "2053"; model_pct "35.9"; chr21 rmsk exon 18688509 18688712 886 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "205"; repFamily "ERVL"; repLeft "-259"; repStart "1"; chr21 rmsk exon 18688713 18689260 1966 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "1192"; repFamily "ERVL"; repLeft "-4522"; repStart "539"; chr21 rmsk exon 18689417 18689837 2107 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2124"; repFamily "ERVL"; repLeft "-3590"; repStart "1674"; chr21 rmsk exon 18689833 18690178 1908 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2323"; chr21 rmsk exon 18690182 18690251 355 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2601"; chr21 rmsk exon 18690255 18690321 354 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2667"; repFamily "ERVL"; repLeft "-3047"; repStart "2601"; chr21 rmsk exon 18690332 18690397 331 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2605"; chr21 rmsk exon 18690402 18690470 345 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2602"; chr21 rmsk exon 18690474 18690616 373 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2541"; chr21 rmsk exon 18690620 18690689 383 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2601"; chr21 rmsk exon 18690694 18690762 360 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2602"; chr21 rmsk exon 18690766 18690835 407 + . gene_id "ERVLB4_21q21.1b"; transcript_id "ERVLB4_21q21.1b"; locus "ERVLB4_21q21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1719"; repClass "LTR"; repEnd "2670"; repFamily "ERVL"; repLeft "-3044"; repStart "2601"; ### HERVW_21q21.1 ### chr21 rmsk gene 18752744 18760548 . - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0298"; model_cov "6320"; model_pct "73.3"; chr21 rmsk exon 18752744 18753521 5991 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr21 rmsk exon 18753522 18753813 2323 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chr21 rmsk exon 18753804 18753842 298 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chr21 rmsk exon 18753836 18759035 41854 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "705"; repStart "-2607"; chr21 rmsk exon 18759105 18759779 5411 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "704"; repFamily "ERV1"; repLeft "27"; repStart "-7922"; chr21 rmsk exon 18759780 18760548 5782 - . gene_id "HERVW_21q21.1"; transcript_id "HERVW_21q21.1"; locus "HERVW_21q21.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0298"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### HERVL_21q21.1d ### chr21 rmsk gene 18808434 18809750 . + . gene_id "HERVL_21q21.1d"; transcript_id "HERVL_21q21.1d"; locus "HERVL_21q21.1d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1231"; model_cov "866"; model_pct "15.3"; chr21 rmsk exon 18808434 18809298 6566 + . gene_id "HERVL_21q21.1d"; transcript_id "HERVL_21q21.1d"; locus "HERVL_21q21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1231"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4788"; chr21 rmsk exon 18809299 18809750 3211 + . gene_id "HERVL_21q21.1d"; transcript_id "HERVL_21q21.1d"; locus "HERVL_21q21.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1231"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_21q21.1c ### chr21 rmsk gene 18923280 18923833 . - . gene_id "ERV316A3_21q21.1c"; transcript_id "ERV316A3_21q21.1c"; locus "ERV316A3_21q21.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2677"; model_cov "568"; model_pct "10.9"; chr21 rmsk exon 18923280 18923833 986 - . gene_id "ERV316A3_21q21.1c"; transcript_id "ERV316A3_21q21.1c"; locus "ERV316A3_21q21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2677"; repClass "LTR"; repEnd "4207"; repFamily "ERVL"; repLeft "3639"; repStart "-1019"; ### MER4B_21q21.1 ### chr21 rmsk gene 18989211 18989923 . - . gene_id "MER4B_21q21.1"; transcript_id "MER4B_21q21.1"; locus "MER4B_21q21.1"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0463"; model_cov "708"; model_pct "10.5"; chr21 rmsk exon 18989211 18989923 2861 - . gene_id "MER4B_21q21.1"; transcript_id "MER4B_21q21.1"; locus "MER4B_21q21.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0463"; repClass "LTR"; repEnd "4227"; repFamily "ERV1"; repLeft "3519"; repStart "-2531"; ### ERVLE_21q21.1f ### chr21 rmsk gene 19145706 19149492 . - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; category "unknown"; intModel "ERVL-E-int"; locid "ERVL-E-int_3519"; model_cov "2573"; model_pct "45.4"; chr21 rmsk exon 19145706 19146214 522 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "4583"; repFamily "ERVL"; repLeft "4071"; repStart "-1084"; chr21 rmsk exon 19146213 19146558 2507 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "2777"; repFamily "ERVL"; repLeft "2458"; repStart "-2890"; chr21 rmsk exon 19146867 19147695 2507 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "2457"; repFamily "ERVL"; repLeft "1638"; repStart "-3210"; chr21 rmsk exon 19148066 19148131 2507 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "1574"; repStart "-4030"; chr21 rmsk exon 19148132 19148664 738 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 19148665 19149492 2507 - . gene_id "ERVLE_21q21.1f"; transcript_id "ERVLE_21q21.1f"; locus "ERVLE_21q21.1f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3519"; repClass "LTR"; repEnd "1573"; repFamily "ERVL"; repLeft "713"; repStart "-4094"; ### HERVL40_21q21.1b ### chr21 rmsk gene 19185392 19189426 . - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0448"; model_cov "1533"; model_pct "27.7"; chr21 rmsk exon 19185392 19185596 660 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "3428"; repFamily "ERVL"; repLeft "3228"; repStart "-2102"; chr21 rmsk exon 19185609 19186195 1848 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "3158"; repFamily "ERVL"; repLeft "2562"; repStart "-2372"; chr21 rmsk exon 19186197 19186544 903 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "2394"; repFamily "ERVL"; repLeft "2050"; repStart "-3136"; chr21 rmsk exon 19186605 19186852 798 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "1567"; repFamily "ERVL"; repLeft "1307"; repStart "-3963"; chr21 rmsk exon 19187332 19187365 798 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "1306"; repFamily "ERVL"; repLeft "1278"; repStart "-4224"; chr21 rmsk exon 19188803 19188911 288 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "106"; repFamily "ERVL"; repLeft "1"; repStart "-5424"; chr21 rmsk exon 19188914 19189426 1633 - . gene_id "HERVL40_21q21.1b"; transcript_id "HERVL40_21q21.1b"; locus "HERVL40_21q21.1b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0448"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "4"; repStart "0"; ### HUERSP3B_21q21.1 ### chr21 rmsk gene 19679015 19683306 . + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0133"; model_cov "2579"; model_pct "34.8"; chr21 rmsk exon 19679015 19679115 686 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "102"; repFamily "ERV1"; repLeft "-542"; repStart "1"; chr21 rmsk exon 19679120 19679461 1787 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "495"; repFamily "ERV1"; repLeft "-6923"; repStart "157"; chr21 rmsk exon 19679585 19681342 11639 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "891"; chr21 rmsk exon 19681765 19681940 1912 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "3240"; repFamily "ERV1"; repLeft "-4178"; repStart "3064"; chr21 rmsk exon 19682234 19682660 2083 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "7414"; repFamily "ERV1"; repLeft "-4"; repStart "7100"; chr21 rmsk exon 19682665 19683306 4308 + . gene_id "HUERSP3B_21q21.1"; transcript_id "HUERSP3B_21q21.1"; locus "HUERSP3B_21q21.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0133"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### ERVLE_21q21.1g ### chr21 rmsk gene 19696833 19702199 . - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3520"; model_cov "2364"; model_pct "41.7"; chr21 rmsk exon 19696833 19696878 369 - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3520"; repClass "LTR"; repEnd "4675"; repFamily "ERVL"; repLeft "4630"; repStart "-992"; chr21 rmsk exon 19697233 19697534 369 - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3520"; repClass "LTR"; repEnd "4629"; repFamily "ERVL"; repLeft "4315"; repStart "-1038"; chr21 rmsk exon 19697895 19699019 1416 - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3520"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "2153"; repStart "-2241"; chr21 rmsk exon 19700797 19701056 389 - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3520"; repClass "LTR"; repEnd "1905"; repFamily "ERVL"; repLeft "1637"; repStart "-3762"; chr21 rmsk exon 19701744 19702199 394 - . gene_id "ERVLE_21q21.1g"; transcript_id "ERVLE_21q21.1g"; locus "ERVLE_21q21.1g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3520"; repClass "LTR"; repEnd "826"; repFamily "ERVL"; repLeft "362"; repStart "-4841"; ### ERVLE_21q21.1h ### chr21 rmsk gene 19826374 19828652 . + . gene_id "ERVLE_21q21.1h"; transcript_id "ERVLE_21q21.1h"; locus "ERVLE_21q21.1h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3523"; model_cov "1125"; model_pct "19.9"; chr21 rmsk exon 19826374 19826611 376 + . gene_id "ERVLE_21q21.1h"; transcript_id "ERVLE_21q21.1h"; locus "ERVLE_21q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3523"; repClass "LTR"; repEnd "783"; repFamily "ERVL"; repLeft "-4884"; repStart "540"; chr21 rmsk exon 19827793 19828281 544 + . gene_id "ERVLE_21q21.1h"; transcript_id "ERVLE_21q21.1h"; locus "ERVLE_21q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3523"; repClass "LTR"; repEnd "4235"; repFamily "ERVL"; repLeft "-1432"; repStart "3726"; chr21 rmsk exon 19828289 19828652 617 + . gene_id "ERVLE_21q21.1h"; transcript_id "ERVLE_21q21.1h"; locus "ERVLE_21q21.1h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3523"; repClass "LTR"; repEnd "4354"; repFamily "ERVL"; repLeft "-1313"; repStart "3981"; ### HERVEA_21q21.1 ### chr21 rmsk gene 19995182 20000184 . - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0094"; model_cov "4134"; model_pct "52.7"; chr21 rmsk exon 19995182 19995645 2246 - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0094"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "3"; repStart "0"; chr21 rmsk exon 19995648 19997839 14489 - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0094"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "5633"; repStart "0"; chr21 rmsk exon 19997831 19999721 12105 - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0094"; repClass "LTR"; repEnd "1921"; repFamily "ERV1"; repLeft "1"; repStart "-5926"; chr21 rmsk exon 19999722 19999993 1469 - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0094"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "194"; repStart "0"; chr21 rmsk exon 20000001 20000184 946 - . gene_id "HERVEA_21q21.1"; transcript_id "HERVEA_21q21.1"; locus "HERVEA_21q21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0094"; repClass "LTR"; repEnd "186"; repFamily "ERV1"; repLeft "3"; repStart "-277"; ### HERVL_21q21.1e ### chr21 rmsk gene 20102058 20104865 . + . gene_id "HERVL_21q21.1e"; transcript_id "HERVL_21q21.1e"; locus "HERVL_21q21.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1233"; model_cov "2289"; model_pct "40.5"; chr21 rmsk exon 20102058 20102447 2535 + . gene_id "HERVL_21q21.1e"; transcript_id "HERVL_21q21.1e"; locus "HERVL_21q21.1e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1233"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr21 rmsk exon 20102580 20104865 17530 + . gene_id "HERVL_21q21.1e"; transcript_id "HERVL_21q21.1e"; locus "HERVL_21q21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1233"; repClass "LTR"; repEnd "2290"; repFamily "ERVL"; repLeft "-3364"; repStart "1"; ### ERVLE_21q21.1i ### chr21 rmsk gene 20123030 20124218 . - . gene_id "ERVLE_21q21.1i"; transcript_id "ERVLE_21q21.1i"; locus "ERVLE_21q21.1i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3524"; model_cov "914"; model_pct "16.1"; chr21 rmsk exon 20123030 20123834 1142 - . gene_id "ERVLE_21q21.1i"; transcript_id "ERVLE_21q21.1i"; locus "ERVLE_21q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3524"; repClass "LTR"; repEnd "3361"; repFamily "ERVL"; repLeft "2535"; repStart "-2306"; chr21 rmsk exon 20124131 20124218 1056 - . gene_id "ERVLE_21q21.1i"; transcript_id "ERVLE_21q21.1i"; locus "ERVLE_21q21.1i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3524"; repClass "LTR"; repEnd "2534"; repFamily "ERVL"; repLeft "2446"; repStart "-3133"; ### ERV316A3_21q21.1d ### chr21 rmsk gene 20419334 20422740 . - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2679"; model_cov "1340"; model_pct "25.6"; chr21 rmsk exon 20419334 20419758 701 - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2679"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-1"; chr21 rmsk exon 20419795 20420177 704 - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2679"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4779"; repStart "-50"; chr21 rmsk exon 20420496 20420639 434 - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2679"; repClass "LTR"; repEnd "4458"; repFamily "ERVL"; repLeft "4314"; repStart "-768"; chr21 rmsk exon 20421962 20422648 746 - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2679"; repClass "LTR"; repEnd "1858"; repFamily "ERVL"; repLeft "1140"; repStart "-3368"; chr21 rmsk exon 20422656 20422740 286 - . gene_id "ERV316A3_21q21.1d"; transcript_id "ERV316A3_21q21.1d"; locus "ERV316A3_21q21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2679"; repClass "LTR"; repEnd "1182"; repFamily "ERVL"; repLeft "1101"; repStart "-4044"; ### HERVL40_21q21.1c ### chr21 rmsk gene 20729449 20732394 . - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0449"; model_cov "1392"; model_pct "25.2"; chr21 rmsk exon 20729449 20729890 1751 - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0449"; repClass "LTR"; repEnd "516"; repFamily "ERVL"; repLeft "71"; repStart "-3"; chr21 rmsk exon 20729945 20730203 980 - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0449"; repClass "LTR"; repEnd "5518"; repFamily "ERVL"; repLeft "5247"; repStart "-12"; chr21 rmsk exon 20731076 20731282 613 - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0449"; repClass "LTR"; repEnd "4486"; repFamily "ERVL"; repLeft "4264"; repStart "-1044"; chr21 rmsk exon 20731403 20732253 2542 - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0449"; repClass "LTR"; repEnd "4115"; repFamily "ERVL"; repLeft "3216"; repStart "-1415"; chr21 rmsk exon 20732255 20732394 664 - . gene_id "HERVL40_21q21.1c"; transcript_id "HERVL40_21q21.1c"; locus "HERVL40_21q21.1c"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0449"; repClass "LTR"; repEnd "202"; repFamily "ERVL"; repLeft "61"; repStart "-317"; ### ERV316A3_21q21.1e ### chr21 rmsk gene 20737691 20740161 . + . gene_id "ERV316A3_21q21.1e"; transcript_id "ERV316A3_21q21.1e"; locus "ERV316A3_21q21.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2680"; model_cov "1809"; model_pct "34.6"; chr21 rmsk exon 20737691 20738715 4340 + . gene_id "ERV316A3_21q21.1e"; transcript_id "ERV316A3_21q21.1e"; locus "ERV316A3_21q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2680"; repClass "LTR"; repEnd "4455"; repFamily "ERVL"; repLeft "-771"; repStart "3413"; chr21 rmsk exon 20739083 20739858 4340 + . gene_id "ERV316A3_21q21.1e"; transcript_id "ERV316A3_21q21.1e"; locus "ERV316A3_21q21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2680"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "4456"; chr21 rmsk exon 20739862 20740161 561 + . gene_id "ERV316A3_21q21.1e"; transcript_id "ERV316A3_21q21.1e"; locus "ERV316A3_21q21.1e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2680"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "-129"; repStart "30"; ### MER61_21q21.1a ### chr21 rmsk gene 20775617 20778015 . - . gene_id "MER61_21q21.1a"; transcript_id "MER61_21q21.1a"; locus "MER61_21q21.1a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0365"; model_cov "1543"; model_pct "29.6"; chr21 rmsk exon 20775617 20776007 2152 - . gene_id "MER61_21q21.1a"; transcript_id "MER61_21q21.1a"; locus "MER61_21q21.1a"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0365"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "99"; repStart "0"; chr21 rmsk exon 20776023 20776283 14118 - . gene_id "MER61_21q21.1a"; transcript_id "MER61_21q21.1a"; locus "MER61_21q21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0365"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4951"; repStart "0"; chr21 rmsk exon 20776580 20778015 17259 - . gene_id "MER61_21q21.1a"; transcript_id "MER61_21q21.1a"; locus "MER61_21q21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0365"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "1758"; repStart "-2182"; ### MER61_21q21.1b ### chr21 rmsk gene 20778071 20781214 . - . gene_id "MER61_21q21.1b"; transcript_id "MER61_21q21.1b"; locus "MER61_21q21.1b"; category "unknown"; intModel "MER61-int"; locid "MER61-int_0366"; model_cov "2760"; model_pct "52.9"; chr21 rmsk exon 20778071 20780041 17259 - . gene_id "MER61_21q21.1b"; transcript_id "MER61_21q21.1b"; locus "MER61_21q21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0366"; repClass "LTR"; repEnd "3035"; repFamily "ERV1"; repLeft "1279"; repStart "-2182"; chr21 rmsk exon 20780043 20780217 1175 - . gene_id "MER61_21q21.1b"; transcript_id "MER61_21q21.1b"; locus "MER61_21q21.1b"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0366"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "143"; repStart "-184"; chr21 rmsk exon 20780218 20781214 2477 - . gene_id "MER61_21q21.1b"; transcript_id "MER61_21q21.1b"; locus "MER61_21q21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0366"; repClass "LTR"; repEnd "1157"; repFamily "ERV1"; repLeft "153"; repStart "-4060"; ### MER61_21q21.1c ### chr21 rmsk gene 20781283 20781840 . - . gene_id "MER61_21q21.1c"; transcript_id "MER61_21q21.1c"; locus "MER61_21q21.1c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0367"; model_cov "557"; model_pct "10.7"; chr21 rmsk exon 20781283 20781840 3509 - . gene_id "MER61_21q21.1c"; transcript_id "MER61_21q21.1c"; locus "MER61_21q21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0367"; repClass "LTR"; repEnd "3151"; repFamily "ERV1"; repLeft "2594"; repStart "-2066"; ### ERVLB4_21q21.1c ### chr21 rmsk gene 21548632 21550313 . - . gene_id "ERVLB4_21q21.1c"; transcript_id "ERVLB4_21q21.1c"; locus "ERVLB4_21q21.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1722"; model_cov "1730"; model_pct "30.3"; chr21 rmsk exon 21548632 21549777 5782 - . gene_id "ERVLB4_21q21.1c"; transcript_id "ERVLB4_21q21.1c"; locus "ERVLB4_21q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1722"; repClass "LTR"; repEnd "3353"; repFamily "ERVL"; repLeft "2186"; repStart "-2361"; chr21 rmsk exon 21549752 21550313 2684 - . gene_id "ERVLB4_21q21.1c"; transcript_id "ERVLB4_21q21.1c"; locus "ERVLB4_21q21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1722"; repClass "LTR"; repEnd "565"; repFamily "ERVL"; repLeft "2"; repStart "-5149"; ### ERVL_21q21.1b ### chr21 rmsk gene 21967658 21968900 . - . gene_id "ERVL_21q21.1b"; transcript_id "ERVL_21q21.1b"; locus "ERVL_21q21.1b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0449"; model_cov "1069"; model_pct "18.6"; chr21 rmsk exon 21967658 21967953 686 - . gene_id "ERVL_21q21.1b"; transcript_id "ERVL_21q21.1b"; locus "ERVL_21q21.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0449"; repClass "LTR"; repEnd "2362"; repFamily "ERVL"; repLeft "2059"; repStart "-3395"; chr21 rmsk exon 21968166 21968900 480 - . gene_id "ERVL_21q21.1b"; transcript_id "ERVL_21q21.1b"; locus "ERVL_21q21.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0449"; repClass "LTR"; repEnd "2152"; repFamily "ERVL"; repLeft "1386"; repStart "-3605"; ### HERVL_21q21.1f ### chr21 rmsk gene 22011484 22018238 . - . gene_id "HERVL_21q21.1f"; transcript_id "HERVL_21q21.1f"; locus "HERVL_21q21.1f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1234"; model_cov "5652"; model_pct "100.0"; chr21 rmsk exon 22011484 22011886 2294 - . gene_id "HERVL_21q21.1f"; transcript_id "HERVL_21q21.1f"; locus "HERVL_21q21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1234"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 22011887 22015529 42280 - . gene_id "HERVL_21q21.1f"; transcript_id "HERVL_21q21.1f"; locus "HERVL_21q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1234"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2002"; repStart "0"; chr21 rmsk exon 22015820 22017811 42280 - . gene_id "HERVL_21q21.1f"; transcript_id "HERVL_21q21.1f"; locus "HERVL_21q21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1234"; repClass "LTR"; repEnd "2001"; repFamily "ERVL"; repLeft "1"; repStart "-3653"; chr21 rmsk exon 22017814 22018238 3021 - . gene_id "HERVL_21q21.1f"; transcript_id "HERVL_21q21.1f"; locus "HERVL_21q21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1234"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERV316A3_21q21.1f ### chr21 rmsk gene 22032698 22035130 . - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2681"; model_cov "1406"; model_pct "26.9"; chr21 rmsk exon 22032698 22032816 310 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "332"; repStart "-9"; chr21 rmsk exon 22033192 22033471 643 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "4984"; repFamily "ERVL"; repLeft "4683"; repStart "-242"; chr21 rmsk exon 22033511 22033906 405 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "4498"; repFamily "ERVL"; repLeft "3860"; repStart "-728"; chr21 rmsk exon 22034156 22034260 587 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3855"; repStart "-1270"; chr21 rmsk exon 22034622 22034796 587 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "3854"; repFamily "ERVL"; repLeft "3680"; repStart "-1372"; chr21 rmsk exon 22034967 22035130 587 - . gene_id "ERV316A3_21q21.1f"; transcript_id "ERV316A3_21q21.1f"; locus "ERV316A3_21q21.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2681"; repClass "LTR"; repEnd "3375"; repFamily "ERVL"; repLeft "3183"; repStart "-1851"; ### ERV316A3_21q21.1g ### chr21 rmsk gene 22042183 22043409 . - . gene_id "ERV316A3_21q21.1g"; transcript_id "ERV316A3_21q21.1g"; locus "ERV316A3_21q21.1g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2682"; model_cov "728"; model_pct "13.9"; chr21 rmsk exon 22042183 22042263 404 - . gene_id "ERV316A3_21q21.1g"; transcript_id "ERV316A3_21q21.1g"; locus "ERV316A3_21q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2682"; repClass "LTR"; repEnd "4795"; repFamily "ERVL"; repLeft "4715"; repStart "-431"; chr21 rmsk exon 22042266 22042884 1314 - . gene_id "ERV316A3_21q21.1g"; transcript_id "ERV316A3_21q21.1g"; locus "ERV316A3_21q21.1g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2682"; repClass "LTR"; repEnd "4357"; repFamily "ERVL"; repLeft "3709"; repStart "-869"; chr21 rmsk exon 22043047 22043409 448 - . gene_id "ERV316A3_21q21.1g"; transcript_id "ERV316A3_21q21.1g"; locus "ERV316A3_21q21.1g"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2682"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "4"; repStart "-39"; ### HUERSP2_21q21.1a ### chr21 rmsk gene 22120231 22120753 . - . gene_id "HUERSP2_21q21.1a"; transcript_id "HUERSP2_21q21.1a"; locus "HUERSP2_21q21.1a"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0120"; model_cov "558"; model_pct "18.1"; chr21 rmsk exon 22120231 22120753 1951 - . gene_id "HUERSP2_21q21.1a"; transcript_id "HUERSP2_21q21.1a"; locus "HUERSP2_21q21.1a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0120"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "2"; repStart "-2528"; ### HUERSP2_21q21.1b ### chr21 rmsk gene 22120754 22124004 . + . gene_id "HUERSP2_21q21.1b"; transcript_id "HUERSP2_21q21.1b"; locus "HUERSP2_21q21.1b"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0121"; model_cov "2583"; model_pct "83.6"; chr21 rmsk exon 22120754 22123351 14545 + . gene_id "HUERSP2_21q21.1b"; transcript_id "HUERSP2_21q21.1b"; locus "HUERSP2_21q21.1b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0121"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "505"; chr21 rmsk exon 22123352 22124004 1516 + . gene_id "HUERSP2_21q21.1b"; transcript_id "HUERSP2_21q21.1b"; locus "HUERSP2_21q21.1b"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0121"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "58"; ### ERVL_21q21.1c ### chr21 rmsk gene 22233868 22237257 . + . gene_id "ERVL_21q21.1c"; transcript_id "ERVL_21q21.1c"; locus "ERVL_21q21.1c"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0450"; model_cov "2494"; model_pct "43.3"; chr21 rmsk exon 22233868 22234128 12710 + . gene_id "ERVL_21q21.1c"; transcript_id "ERVL_21q21.1c"; locus "ERVL_21q21.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0450"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "-2236"; repStart "3262"; chr21 rmsk exon 22234617 22236875 12710 + . gene_id "ERVL_21q21.1c"; transcript_id "ERVL_21q21.1c"; locus "ERVL_21q21.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0450"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3522"; chr21 rmsk exon 22236876 22237257 1441 + . gene_id "ERVL_21q21.1c"; transcript_id "ERVL_21q21.1c"; locus "ERVL_21q21.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0450"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "-41"; ### ERVLE_21q21.1j ### chr21 rmsk gene 22441301 22442107 . - . gene_id "ERVLE_21q21.1j"; transcript_id "ERVLE_21q21.1j"; locus "ERVLE_21q21.1j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3525"; model_cov "585"; model_pct "10.3"; chr21 rmsk exon 22441301 22441652 594 - . gene_id "ERVLE_21q21.1j"; transcript_id "ERVLE_21q21.1j"; locus "ERVLE_21q21.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3525"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "4661"; repStart "-633"; chr21 rmsk exon 22441907 22442107 471 - . gene_id "ERVLE_21q21.1j"; transcript_id "ERVLE_21q21.1j"; locus "ERVLE_21q21.1j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3525"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "4138"; repStart "-1317"; ### MER61_21q21.1d ### chr21 rmsk gene 22519922 22521445 . + . gene_id "MER61_21q21.1d"; transcript_id "MER61_21q21.1d"; locus "MER61_21q21.1d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0368"; model_cov "1217"; model_pct "23.3"; chr21 rmsk exon 22519922 22521098 7852 + . gene_id "MER61_21q21.1d"; transcript_id "MER61_21q21.1d"; locus "MER61_21q21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0368"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4000"; chr21 rmsk exon 22521099 22521445 1564 + . gene_id "MER61_21q21.1d"; transcript_id "MER61_21q21.1d"; locus "MER61_21q21.1d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0368"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_21q21.2a ### chr21 rmsk gene 22605806 22609121 . - . gene_id "MER4_21q21.2a"; transcript_id "MER4_21q21.2a"; locus "MER4_21q21.2a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0780"; model_cov "3882"; model_pct "58.8"; chr21 rmsk exon 22605806 22606379 12153 - . gene_id "MER4_21q21.2a"; transcript_id "MER4_21q21.2a"; locus "MER4_21q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0780"; repClass "LTR"; repEnd "6173"; repFamily "ERV1"; repLeft "5591"; repStart "-425"; chr21 rmsk exon 22606699 22607701 12153 - . gene_id "MER4_21q21.2a"; transcript_id "MER4_21q21.2a"; locus "MER4_21q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0780"; repClass "LTR"; repEnd "5590"; repFamily "ERV1"; repLeft "4517"; repStart "-1008"; chr21 rmsk exon 22608002 22609121 12153 - . gene_id "MER4_21q21.2a"; transcript_id "MER4_21q21.2a"; locus "MER4_21q21.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0780"; repClass "LTR"; repEnd "4516"; repFamily "ERV1"; repLeft "2289"; repStart "-2082"; ### MER4_21q21.2b ### chr21 rmsk gene 22609374 22611137 . - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0781"; model_cov "1878"; model_pct "28.5"; chr21 rmsk exon 22609374 22610025 12153 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0781"; repClass "LTR"; repEnd "4516"; repFamily "ERV1"; repLeft "3216"; repStart "-2082"; chr21 rmsk exon 22610024 22610150 780 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0781"; repClass "LTR"; repEnd "1622"; repFamily "ERV1"; repLeft "1498"; repStart "-4976"; chr21 rmsk exon 22610153 22610241 506 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0781"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "1005"; repStart "-5506"; chr21 rmsk exon 22610238 22610611 1803 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0781"; repClass "LTR"; repEnd "-1198"; repFamily "ERV1"; repLeft "-1498"; repStart "-7796"; chr21 rmsk exon 22610614 22610680 521 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0781"; repClass "LTR"; repEnd "68"; repFamily "ERV1"; repLeft "1"; repStart "-6530"; chr21 rmsk exon 22610684 22611137 3234 - . gene_id "MER4_21q21.2b"; transcript_id "MER4_21q21.2b"; locus "MER4_21q21.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0781"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_21q21.2a ### chr21 rmsk gene 22726761 22728695 . - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0407"; model_cov "1193"; model_pct "18.0"; chr21 rmsk exon 22726761 22726852 519 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0407"; repClass "LTR"; repEnd "270"; repFamily "ERV1"; repLeft "177"; repStart "-204"; chr21 rmsk exon 22726854 22727072 1192 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "6361"; repFamily "ERV1"; repLeft "6143"; repStart "-278"; chr21 rmsk exon 22727073 22727314 1262 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "4196"; repFamily "ERV1"; repLeft "3984"; repStart "-2443"; chr21 rmsk exon 22727617 22727685 1262 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "3983"; repFamily "ERV1"; repLeft "3924"; repStart "-2656"; chr21 rmsk exon 22727702 22727944 915 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "3935"; repFamily "ERV1"; repLeft "3705"; repStart "-2704"; chr21 rmsk exon 22728174 22728454 1177 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "2537"; repFamily "ERV1"; repLeft "2248"; repStart "-4102"; chr21 rmsk exon 22728511 22728695 1028 - . gene_id "MER101_21q21.2a"; transcript_id "MER101_21q21.2a"; locus "MER101_21q21.2a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0407"; repClass "LTR"; repEnd "1560"; repFamily "ERV1"; repLeft "1375"; repStart "-5079"; ### ERVLE_21q21.2a ### chr21 rmsk gene 22769060 22769701 . - . gene_id "ERVLE_21q21.2a"; transcript_id "ERVLE_21q21.2a"; locus "ERVLE_21q21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3526"; model_cov "701"; model_pct "12.4"; chr21 rmsk exon 22769060 22769701 1213 - . gene_id "ERVLE_21q21.2a"; transcript_id "ERVLE_21q21.2a"; locus "ERVLE_21q21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3526"; repClass "LTR"; repEnd "5632"; repFamily "ERVL"; repLeft "4931"; repStart "-35"; ### MER61_21q21.2 ### chr21 rmsk gene 22842834 22848544 . - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0369"; model_cov "3032"; model_pct "58.1"; chr21 rmsk exon 22842834 22843206 1825 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0369"; repClass "LTR"; repEnd "496"; repFamily "ERV1"; repLeft "114"; repStart "-5"; chr21 rmsk exon 22843251 22845342 12830 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0369"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "3045"; repStart "-4"; chr21 rmsk exon 22845638 22845743 612 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0369"; repClass "LTR"; repEnd "2506"; repFamily "ERV1"; repLeft "2399"; repStart "-2711"; chr21 rmsk exon 22845743 22845853 392 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0369"; repClass "LTR"; repEnd "302"; repFamily "ERV1"; repLeft "202"; repStart "-4915"; chr21 rmsk exon 22847626 22847897 885 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0369"; repClass "LTR"; repEnd "-1132"; repFamily "ERV1"; repLeft "-1674"; repStart "-6349"; chr21 rmsk exon 22847908 22847989 292 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0369"; repClass "LTR"; repEnd "-1450"; repFamily "ERV1"; repLeft "-1565"; repStart "-6667"; chr21 rmsk exon 22848163 22848544 2068 - . gene_id "MER61_21q21.2"; transcript_id "MER61_21q21.2"; locus "MER61_21q21.2"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0369"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "114"; repStart "0"; ### LTR25_21q21.2 ### chr21 rmsk gene 22845983 22847501 . - . gene_id "LTR25_21q21.2"; transcript_id "LTR25_21q21.2"; locus "LTR25_21q21.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0138"; model_cov "964"; model_pct "13.4"; chr21 rmsk exon 22845983 22847065 3379 - . gene_id "LTR25_21q21.2"; transcript_id "LTR25_21q21.2"; locus "LTR25_21q21.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0138"; repClass "LTR"; repEnd "4415"; repFamily "ERV1"; repLeft "3752"; repStart "-2773"; chr21 rmsk exon 22847075 22847501 1638 - . gene_id "LTR25_21q21.2"; transcript_id "LTR25_21q21.2"; locus "LTR25_21q21.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0138"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "2113"; repStart "-4774"; ### ERV316A3_21q21.2a ### chr21 rmsk gene 22936597 22937639 . - . gene_id "ERV316A3_21q21.2a"; transcript_id "ERV316A3_21q21.2a"; locus "ERV316A3_21q21.2a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2684"; model_cov "606"; model_pct "11.6"; chr21 rmsk exon 22936597 22936853 540 - . gene_id "ERV316A3_21q21.2a"; transcript_id "ERV316A3_21q21.2a"; locus "ERV316A3_21q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2684"; repClass "LTR"; repEnd "2494"; repFamily "ERVL"; repLeft "2233"; repStart "-2732"; chr21 rmsk exon 22937286 22937639 309 - . gene_id "ERV316A3_21q21.2a"; transcript_id "ERV316A3_21q21.2a"; locus "ERV316A3_21q21.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2684"; repClass "LTR"; repEnd "1341"; repFamily "ERVL"; repLeft "996"; repStart "-3885"; ### MER4_21q21.2c ### chr21 rmsk gene 23139069 23142550 . - . gene_id "MER4_21q21.2c"; transcript_id "MER4_21q21.2c"; locus "MER4_21q21.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0782"; model_cov "3226"; model_pct "48.9"; chr21 rmsk exon 23139069 23139543 3207 - . gene_id "MER4_21q21.2c"; transcript_id "MER4_21q21.2c"; locus "MER4_21q21.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0782"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chr21 rmsk exon 23139552 23140276 3836 - . gene_id "MER4_21q21.2c"; transcript_id "MER4_21q21.2c"; locus "MER4_21q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0782"; repClass "LTR"; repEnd "6022"; repFamily "ERV1"; repLeft "5291"; repStart "-576"; chr21 rmsk exon 23140246 23141862 8805 - . gene_id "MER4_21q21.2c"; transcript_id "MER4_21q21.2c"; locus "MER4_21q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0782"; repClass "LTR"; repEnd "5552"; repFamily "ERV1"; repLeft "3875"; repStart "-1046"; chr21 rmsk exon 23141856 23142550 11451 - . gene_id "MER4_21q21.2c"; transcript_id "MER4_21q21.2c"; locus "MER4_21q21.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0782"; repClass "LTR"; repEnd "3480"; repFamily "ERV1"; repLeft "2662"; repStart "-3118"; ### MER4_21q21.2d ### chr21 rmsk gene 23142795 23146275 . - . gene_id "MER4_21q21.2d"; transcript_id "MER4_21q21.2d"; locus "MER4_21q21.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0783"; model_cov "2658"; model_pct "40.3"; chr21 rmsk exon 23142795 23143644 11451 - . gene_id "MER4_21q21.2d"; transcript_id "MER4_21q21.2d"; locus "MER4_21q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0783"; repClass "LTR"; repEnd "3480"; repFamily "ERV1"; repLeft "2476"; repStart "-3118"; chr21 rmsk exon 23143930 23144506 11451 - . gene_id "MER4_21q21.2d"; transcript_id "MER4_21q21.2d"; locus "MER4_21q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0783"; repClass "LTR"; repEnd "1656"; repFamily "ERV1"; repLeft "1053"; repStart "-4942"; chr21 rmsk exon 23144802 23145797 11451 - . gene_id "MER4_21q21.2d"; transcript_id "MER4_21q21.2d"; locus "MER4_21q21.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0783"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "1"; repStart "-5546"; chr21 rmsk exon 23145801 23146275 3009 - . gene_id "MER4_21q21.2d"; transcript_id "MER4_21q21.2d"; locus "MER4_21q21.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0783"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLE_21q21.2b ### chr21 rmsk gene 23224070 23225710 . + . gene_id "ERVLE_21q21.2b"; transcript_id "ERVLE_21q21.2b"; locus "ERVLE_21q21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3528"; model_cov "1417"; model_pct "25.0"; chr21 rmsk exon 23224070 23224658 923 + . gene_id "ERVLE_21q21.2b"; transcript_id "ERVLE_21q21.2b"; locus "ERVLE_21q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3528"; repClass "LTR"; repEnd "1925"; repFamily "ERVL"; repLeft "-3742"; repStart "1335"; chr21 rmsk exon 23224802 23225162 612 + . gene_id "ERVLE_21q21.2b"; transcript_id "ERVLE_21q21.2b"; locus "ERVLE_21q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3528"; repClass "LTR"; repEnd "4799"; repFamily "ERVL"; repLeft "-868"; repStart "4451"; chr21 rmsk exon 23225261 23225710 829 + . gene_id "ERVLE_21q21.2b"; transcript_id "ERVLE_21q21.2b"; locus "ERVLE_21q21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3528"; repClass "LTR"; repEnd "5494"; repFamily "ERVL"; repLeft "-173"; repStart "5015"; ### ERV316A3_21q21.2b ### chr21 rmsk gene 23316077 23319336 . - . gene_id "ERV316A3_21q21.2b"; transcript_id "ERV316A3_21q21.2b"; locus "ERV316A3_21q21.2b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2686"; model_cov "1237"; model_pct "23.7"; chr21 rmsk exon 23316077 23316867 1465 - . gene_id "ERV316A3_21q21.2b"; transcript_id "ERV316A3_21q21.2b"; locus "ERV316A3_21q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2686"; repClass "LTR"; repEnd "2940"; repFamily "ERVL"; repLeft "2015"; repStart "-2286"; chr21 rmsk exon 23319015 23319336 419 - . gene_id "ERV316A3_21q21.2b"; transcript_id "ERV316A3_21q21.2b"; locus "ERV316A3_21q21.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2686"; repClass "LTR"; repEnd "1581"; repFamily "ERVL"; repLeft "1269"; repStart "-3645"; ### MER101_21q21.2b ### chr21 rmsk gene 23451495 23452335 . - . gene_id "MER101_21q21.2b"; transcript_id "MER101_21q21.2b"; locus "MER101_21q21.2b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0408"; model_cov "777"; model_pct "11.7"; chr21 rmsk exon 23451495 23452335 1962 - . gene_id "MER101_21q21.2b"; transcript_id "MER101_21q21.2b"; locus "MER101_21q21.2b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0408"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "3150"; repStart "-2712"; ### LTR57_21q21.2 ### chr21 rmsk gene 23453632 23455296 . - . gene_id "LTR57_21q21.2"; transcript_id "LTR57_21q21.2"; locus "LTR57_21q21.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0177"; model_cov "1285"; model_pct "24.1"; chr21 rmsk exon 23453632 23454286 4291 - . gene_id "LTR57_21q21.2"; transcript_id "LTR57_21q21.2"; locus "LTR57_21q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0177"; repClass "LTR"; repEnd "1596"; repFamily "ERVL"; repLeft "972"; repStart "-3747"; chr21 rmsk exon 23454706 23455296 4291 - . gene_id "LTR57_21q21.2"; transcript_id "LTR57_21q21.2"; locus "LTR57_21q21.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0177"; repClass "LTR"; repEnd "971"; repFamily "ERVL"; repLeft "310"; repStart "-4372"; ### ERVLE_21q21.2c ### chr21 rmsk gene 23507311 23509535 . - . gene_id "ERVLE_21q21.2c"; transcript_id "ERVLE_21q21.2c"; locus "ERVLE_21q21.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3530"; model_cov "1242"; model_pct "21.9"; chr21 rmsk exon 23507311 23508335 3071 - . gene_id "ERVLE_21q21.2c"; transcript_id "ERVLE_21q21.2c"; locus "ERVLE_21q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3530"; repClass "LTR"; repEnd "3786"; repFamily "ERVL"; repLeft "2725"; repStart "-1881"; chr21 rmsk exon 23509044 23509087 540 - . gene_id "ERVLE_21q21.2c"; transcript_id "ERVLE_21q21.2c"; locus "ERVLE_21q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3530"; repClass "LTR"; repEnd "2296"; repFamily "ERVL"; repLeft "2255"; repStart "-3371"; chr21 rmsk exon 23509388 23509535 540 - . gene_id "ERVLE_21q21.2c"; transcript_id "ERVLE_21q21.2c"; locus "ERVLE_21q21.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3530"; repClass "LTR"; repEnd "2254"; repFamily "ERVL"; repLeft "2114"; repStart "-3413"; ### ERVLE_21q21.2d ### chr21 rmsk gene 23532642 23535042 . - . gene_id "ERVLE_21q21.2d"; transcript_id "ERVLE_21q21.2d"; locus "ERVLE_21q21.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3531"; model_cov "799"; model_pct "14.1"; chr21 rmsk exon 23532642 23532911 316 - . gene_id "ERVLE_21q21.2d"; transcript_id "ERVLE_21q21.2d"; locus "ERVLE_21q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3531"; repClass "LTR"; repEnd "5072"; repFamily "ERVL"; repLeft "4802"; repStart "-595"; chr21 rmsk exon 23534244 23534494 294 - . gene_id "ERVLE_21q21.2d"; transcript_id "ERVLE_21q21.2d"; locus "ERVLE_21q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3531"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "3695"; repStart "-1710"; chr21 rmsk exon 23534784 23535042 271 - . gene_id "ERVLE_21q21.2d"; transcript_id "ERVLE_21q21.2d"; locus "ERVLE_21q21.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3531"; repClass "LTR"; repEnd "2863"; repFamily "ERVL"; repLeft "2596"; repStart "-2804"; ### ERVLB4_21q21.2a ### chr21 rmsk gene 23612704 23614308 . - . gene_id "ERVLB4_21q21.2a"; transcript_id "ERVLB4_21q21.2a"; locus "ERVLB4_21q21.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1725"; model_cov "1144"; model_pct "20.0"; chr21 rmsk exon 23612704 23613841 3012 - . gene_id "ERVLB4_21q21.2a"; transcript_id "ERVLB4_21q21.2a"; locus "ERVLB4_21q21.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1725"; repClass "LTR"; repEnd "1193"; repFamily "ERVL"; repLeft "49"; repStart "-4521"; chr21 rmsk exon 23613851 23613905 249 - . gene_id "ERVLB4_21q21.2a"; transcript_id "ERVLB4_21q21.2a"; locus "ERVLB4_21q21.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1725"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "367"; repStart "0"; chr21 rmsk exon 23613936 23614308 1492 - . gene_id "ERVLB4_21q21.2a"; transcript_id "ERVLB4_21q21.2a"; locus "ERVLB4_21q21.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1725"; repClass "LTR"; repEnd "374"; repFamily "ERVL"; repLeft "1"; repStart "-40"; ### ERV316A3_21q21.2c ### chr21 rmsk gene 23751700 23752849 . - . gene_id "ERV316A3_21q21.2c"; transcript_id "ERV316A3_21q21.2c"; locus "ERV316A3_21q21.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2688"; model_cov "746"; model_pct "14.3"; chr21 rmsk exon 23751700 23752073 638 - . gene_id "ERV316A3_21q21.2c"; transcript_id "ERV316A3_21q21.2c"; locus "ERV316A3_21q21.2c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2688"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "1"; repStart "-7"; chr21 rmsk exon 23752078 23752849 1671 - . gene_id "ERV316A3_21q21.2c"; transcript_id "ERV316A3_21q21.2c"; locus "ERV316A3_21q21.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2688"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "4476"; repStart "-4"; ### ERV316A3_21q21.2d ### chr21 rmsk gene 23896824 23901268 . + . gene_id "ERV316A3_21q21.2d"; transcript_id "ERV316A3_21q21.2d"; locus "ERV316A3_21q21.2d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2689"; model_cov "1275"; model_pct "24.4"; chr21 rmsk exon 23896824 23896887 524 + . gene_id "ERV316A3_21q21.2d"; transcript_id "ERV316A3_21q21.2d"; locus "ERV316A3_21q21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2689"; repClass "LTR"; repEnd "1098"; repFamily "ERVL"; repLeft "-4128"; repStart "1037"; chr21 rmsk exon 23896962 23897235 524 + . gene_id "ERV316A3_21q21.2d"; transcript_id "ERV316A3_21q21.2d"; locus "ERV316A3_21q21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2689"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "-3833"; repStart "1099"; chr21 rmsk exon 23897980 23898281 481 + . gene_id "ERV316A3_21q21.2d"; transcript_id "ERV316A3_21q21.2d"; locus "ERV316A3_21q21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2689"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-2998"; repStart "1911"; chr21 rmsk exon 23900684 23901268 1010 + . gene_id "ERV316A3_21q21.2d"; transcript_id "ERV316A3_21q21.2d"; locus "ERV316A3_21q21.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2689"; repClass "LTR"; repEnd "2639"; repFamily "ERVL"; repLeft "-2587"; repStart "2036"; ### ERV316A3_21q21.2e ### chr21 rmsk gene 23902225 23904756 . + . gene_id "ERV316A3_21q21.2e"; transcript_id "ERV316A3_21q21.2e"; locus "ERV316A3_21q21.2e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2690"; model_cov "1438"; model_pct "27.5"; chr21 rmsk exon 23902225 23902326 260 + . gene_id "ERV316A3_21q21.2e"; transcript_id "ERV316A3_21q21.2e"; locus "ERV316A3_21q21.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2690"; repClass "LTR"; repEnd "2625"; repFamily "ERVL"; repLeft "-2601"; repStart "2521"; chr21 rmsk exon 23902872 23903803 832 + . gene_id "ERV316A3_21q21.2e"; transcript_id "ERV316A3_21q21.2e"; locus "ERV316A3_21q21.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2690"; repClass "LTR"; repEnd "4110"; repFamily "ERVL"; repLeft "-1116"; repStart "3081"; chr21 rmsk exon 23904108 23904400 794 + . gene_id "ERV316A3_21q21.2e"; transcript_id "ERV316A3_21q21.2e"; locus "ERV316A3_21q21.2e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2690"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "-810"; repStart "4111"; chr21 rmsk exon 23904685 23904756 537 + . gene_id "ERV316A3_21q21.2e"; transcript_id "ERV316A3_21q21.2e"; locus "ERV316A3_21q21.2e"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2690"; repClass "LTR"; repEnd "69"; repFamily "ERVL"; repLeft "-369"; repStart "1"; ### ERVLE_21q21.2e ### chr21 rmsk gene 23938298 23940960 . + . gene_id "ERVLE_21q21.2e"; transcript_id "ERVLE_21q21.2e"; locus "ERVLE_21q21.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3532"; model_cov "1705"; model_pct "30.1"; chr21 rmsk exon 23938298 23938622 620 + . gene_id "ERVLE_21q21.2e"; transcript_id "ERVLE_21q21.2e"; locus "ERVLE_21q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3532"; repClass "LTR"; repEnd "917"; repFamily "ERVL"; repLeft "-4750"; repStart "595"; chr21 rmsk exon 23939133 23939624 1054 + . gene_id "ERVLE_21q21.2e"; transcript_id "ERVLE_21q21.2e"; locus "ERVLE_21q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3532"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "-4274"; repStart "914"; chr21 rmsk exon 23940098 23940960 1327 + . gene_id "ERVLE_21q21.2e"; transcript_id "ERVLE_21q21.2e"; locus "ERVLE_21q21.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3532"; repClass "LTR"; repEnd "2311"; repFamily "ERVL"; repLeft "-3356"; repStart "1407"; ### HERVL18_21q21.2 ### chr21 rmsk gene 23963392 23969659 . - . gene_id "HERVL18_21q21.2"; transcript_id "HERVL18_21q21.2"; locus "HERVL18_21q21.2"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0142"; model_cov "5965"; model_pct "98.6"; chr21 rmsk exon 23963392 23963716 1642 - . gene_id "HERVL18_21q21.2"; transcript_id "HERVL18_21q21.2"; locus "HERVL18_21q21.2"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0142"; repClass "LTR"; repEnd "336"; repFamily "ERVL"; repLeft "1"; repStart "-9"; chr21 rmsk exon 23963718 23969659 36592 - . gene_id "HERVL18_21q21.2"; transcript_id "HERVL18_21q21.2"; locus "HERVL18_21q21.2"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0142"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "82"; repStart "0"; ### ERV316A3_21q21.2f ### chr21 rmsk gene 24072644 24076040 . - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2691"; model_cov "1994"; model_pct "38.2"; chr21 rmsk exon 24072644 24073022 918 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "149"; repStart "-22"; chr21 rmsk exon 24073522 24073707 402 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "4551"; repFamily "ERVL"; repLeft "4375"; repStart "-675"; chr21 rmsk exon 24073979 24074371 615 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "4015"; repFamily "ERVL"; repLeft "3611"; repStart "-1211"; chr21 rmsk exon 24074402 24074614 854 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "3813"; repFamily "ERVL"; repLeft "3601"; repStart "-1413"; chr21 rmsk exon 24074989 24075640 854 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "3309"; repFamily "ERVL"; repLeft "2545"; repStart "-1917"; chr21 rmsk exon 24075639 24076040 356 - . gene_id "ERV316A3_21q21.2f"; transcript_id "ERV316A3_21q21.2f"; locus "ERV316A3_21q21.2f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2691"; repClass "LTR"; repEnd "2638"; repFamily "ERVL"; repLeft "2200"; repStart "-2588"; ### MER41_21q21.2 ### chr21 rmsk gene 24416102 24417381 . + . gene_id "MER41_21q21.2"; transcript_id "MER41_21q21.2"; locus "MER41_21q21.2"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0537"; model_cov "593"; model_pct "10.0"; chr21 rmsk exon 24416102 24416643 4026 + . gene_id "MER41_21q21.2"; transcript_id "MER41_21q21.2"; locus "MER41_21q21.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0537"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 24416780 24417381 3611 + . gene_id "MER41_21q21.2"; transcript_id "MER41_21q21.2"; locus "MER41_21q21.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0537"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "-5351"; repStart "2"; ### ERV316A3_21q21.2g ### chr21 rmsk gene 24438073 24441244 . + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2692"; model_cov "1508"; model_pct "28.9"; chr21 rmsk exon 24438073 24438400 849 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "141"; chr21 rmsk exon 24438527 24439002 703 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "578"; repFamily "ERVL"; repLeft "-4648"; repStart "97"; chr21 rmsk exon 24439293 24439365 703 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "658"; repFamily "ERVL"; repLeft "-4568"; repStart "579"; chr21 rmsk exon 24439735 24439877 703 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "802"; repFamily "ERVL"; repLeft "-4424"; repStart "659"; chr21 rmsk exon 24439902 24440440 1240 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "1457"; repFamily "ERVL"; repLeft "-3769"; repStart "896"; chr21 rmsk exon 24441019 24441244 395 + . gene_id "ERV316A3_21q21.2g"; transcript_id "ERV316A3_21q21.2g"; locus "ERV316A3_21q21.2g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2692"; repClass "LTR"; repEnd "4119"; repFamily "ERVL"; repLeft "-1107"; repStart "3875"; ### ERVLE_21q21.2f ### chr21 rmsk gene 24563136 24565093 . - . gene_id "ERVLE_21q21.2f"; transcript_id "ERVLE_21q21.2f"; locus "ERVLE_21q21.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3534"; model_cov "1206"; model_pct "21.3"; chr21 rmsk exon 24563136 24564020 808 - . gene_id "ERVLE_21q21.2f"; transcript_id "ERVLE_21q21.2f"; locus "ERVLE_21q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3534"; repClass "LTR"; repEnd "4912"; repFamily "ERVL"; repLeft "3993"; repStart "-755"; chr21 rmsk exon 24564051 24564244 482 - . gene_id "ERVLE_21q21.2f"; transcript_id "ERVLE_21q21.2f"; locus "ERVLE_21q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3534"; repClass "LTR"; repEnd "4249"; repFamily "ERVL"; repLeft "4051"; repStart "-1418"; chr21 rmsk exon 24565005 24565093 282 - . gene_id "ERVLE_21q21.2f"; transcript_id "ERVLE_21q21.2f"; locus "ERVLE_21q21.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3534"; repClass "LTR"; repEnd "3265"; repFamily "ERVL"; repLeft "3176"; repStart "-2402"; ### ERVLB4_21q21.2b ### chr21 rmsk gene 24631024 24634410 . - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1726"; model_cov "2030"; model_pct "35.5"; chr21 rmsk exon 24631024 24631246 603 - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1726"; repClass "LTR"; repEnd "351"; repFamily "ERVL"; repLeft "120"; repStart "-63"; chr21 rmsk exon 24631248 24632819 7600 - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1726"; repClass "LTR"; repEnd "2181"; repFamily "ERVL"; repLeft "563"; repStart "-3533"; chr21 rmsk exon 24633057 24633363 1604 - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1726"; repClass "LTR"; repEnd "576"; repFamily "ERVL"; repLeft "270"; repStart "-5138"; chr21 rmsk exon 24633538 24633643 549 - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1726"; repClass "LTR"; repEnd "179"; repFamily "ERVL"; repLeft "73"; repStart "-5535"; chr21 rmsk exon 24634068 24634410 916 - . gene_id "ERVLB4_21q21.2b"; transcript_id "ERVLB4_21q21.2b"; locus "ERVLB4_21q21.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1726"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "87"; repStart "0"; ### ERV316A3_21q21.2h ### chr21 rmsk gene 24764110 24764815 . + . gene_id "ERV316A3_21q21.2h"; transcript_id "ERV316A3_21q21.2h"; locus "ERV316A3_21q21.2h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2693"; model_cov "643"; model_pct "12.3"; chr21 rmsk exon 24764110 24764729 1564 + . gene_id "ERV316A3_21q21.2h"; transcript_id "ERV316A3_21q21.2h"; locus "ERV316A3_21q21.2h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2693"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4583"; chr21 rmsk exon 24764730 24764815 279 + . gene_id "ERV316A3_21q21.2h"; transcript_id "ERV316A3_21q21.2h"; locus "ERV316A3_21q21.2h"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2693"; repClass "LTR"; repEnd "83"; repFamily "ERVL"; repLeft "-380"; repStart "1"; ### HERVL40_21q21.2 ### chr21 rmsk gene 24851265 24853161 . + . gene_id "HERVL40_21q21.2"; transcript_id "HERVL40_21q21.2"; locus "HERVL40_21q21.2"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0452"; model_cov "1157"; model_pct "20.9"; chr21 rmsk exon 24851265 24851319 319 + . gene_id "HERVL40_21q21.2"; transcript_id "HERVL40_21q21.2"; locus "HERVL40_21q21.2"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0452"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "408"; chr21 rmsk exon 24851335 24851650 679 + . gene_id "HERVL40_21q21.2"; transcript_id "HERVL40_21q21.2"; locus "HERVL40_21q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0452"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-5157"; repStart "19"; chr21 rmsk exon 24852351 24852421 378 + . gene_id "HERVL40_21q21.2"; transcript_id "HERVL40_21q21.2"; locus "HERVL40_21q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0452"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "-4984"; repStart "476"; chr21 rmsk exon 24852475 24853161 989 + . gene_id "HERVL40_21q21.2"; transcript_id "HERVL40_21q21.2"; locus "HERVL40_21q21.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0452"; repClass "LTR"; repEnd "1297"; repFamily "ERVL"; repLeft "-4233"; repStart "564"; ### HUERSP3_21q21.2 ### chr21 rmsk gene 24991755 24995097 . + . gene_id "HUERSP3_21q21.2"; transcript_id "HUERSP3_21q21.2"; locus "HUERSP3_21q21.2"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0210"; model_cov "1573"; model_pct "17.6"; chr21 rmsk exon 24991755 24993070 7451 + . gene_id "HUERSP3_21q21.2"; transcript_id "HUERSP3_21q21.2"; locus "HUERSP3_21q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0210"; repClass "LTR"; repEnd "6934"; repFamily "ERV1"; repLeft "-1985"; repStart "5621"; chr21 rmsk exon 24994818 24995097 1014 + . gene_id "HUERSP3_21q21.2"; transcript_id "HUERSP3_21q21.2"; locus "HUERSP3_21q21.2"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0210"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8659"; ### ERVLB4_21q21.2c ### chr21 rmsk gene 25025452 25029000 . + . gene_id "ERVLB4_21q21.2c"; transcript_id "ERVLB4_21q21.2c"; locus "ERVLB4_21q21.2c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1727"; model_cov "2403"; model_pct "42.1"; chr21 rmsk exon 25025452 25026063 11569 + . gene_id "ERVLB4_21q21.2c"; transcript_id "ERVLB4_21q21.2c"; locus "ERVLB4_21q21.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1727"; repClass "LTR"; repEnd "3933"; repFamily "ERVL"; repLeft "-1781"; repStart "3298"; chr21 rmsk exon 25026384 25027814 11569 + . gene_id "ERVLB4_21q21.2c"; transcript_id "ERVLB4_21q21.2c"; locus "ERVLB4_21q21.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1727"; repClass "LTR"; repEnd "5396"; repFamily "ERVL"; repLeft "-318"; repStart "3934"; chr21 rmsk exon 25028229 25028545 1535 + . gene_id "ERVLB4_21q21.2c"; transcript_id "ERVLB4_21q21.2c"; locus "ERVLB4_21q21.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1727"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5408"; chr21 rmsk exon 25028546 25029000 1822 + . gene_id "ERVLB4_21q21.2c"; transcript_id "ERVLB4_21q21.2c"; locus "ERVLB4_21q21.2c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1727"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "-2"; repStart "-148"; ### ERVLB4_21q21.3a ### chr21 rmsk gene 25619064 25620792 . - . gene_id "ERVLB4_21q21.3a"; transcript_id "ERVLB4_21q21.3a"; locus "ERVLB4_21q21.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1728"; model_cov "1074"; model_pct "18.8"; chr21 rmsk exon 25619064 25619564 1380 - . gene_id "ERVLB4_21q21.3a"; transcript_id "ERVLB4_21q21.3a"; locus "ERVLB4_21q21.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1728"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "-35"; repStart "0"; chr21 rmsk exon 25619566 25620173 14050 - . gene_id "ERVLB4_21q21.3a"; transcript_id "ERVLB4_21q21.3a"; locus "ERVLB4_21q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1728"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5146"; repStart "-1"; chr21 rmsk exon 25620306 25620792 14050 - . gene_id "ERVLB4_21q21.3a"; transcript_id "ERVLB4_21q21.3a"; locus "ERVLB4_21q21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1728"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "4638"; repStart "-569"; ### ERVLB4_21q21.3b ### chr21 rmsk gene 25620851 25622818 . - . gene_id "ERVLB4_21q21.3b"; transcript_id "ERVLB4_21q21.3b"; locus "ERVLB4_21q21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1729"; model_cov "1719"; model_pct "30.1"; chr21 rmsk exon 25620851 25621758 14050 - . gene_id "ERVLB4_21q21.3b"; transcript_id "ERVLB4_21q21.3b"; locus "ERVLB4_21q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1729"; repClass "LTR"; repEnd "5145"; repFamily "ERVL"; repLeft "4196"; repStart "-569"; chr21 rmsk exon 25622041 25622689 14050 - . gene_id "ERVLB4_21q21.3b"; transcript_id "ERVLB4_21q21.3b"; locus "ERVLB4_21q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1729"; repClass "LTR"; repEnd "3687"; repFamily "ERVL"; repLeft "3038"; repStart "-2027"; chr21 rmsk exon 25622687 25622818 526 - . gene_id "ERVLB4_21q21.3b"; transcript_id "ERVLB4_21q21.3b"; locus "ERVLB4_21q21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1729"; repClass "LTR"; repEnd "840"; repFamily "ERVL"; repLeft "719"; repStart "-4874"; ### HERVH_21q21.3a ### chr21 rmsk gene 26227879 26233487 . - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1205"; model_cov "5110"; model_pct "66.3"; chr21 rmsk exon 26227879 26228284 2710 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "2"; repStart "-2"; chr21 rmsk exon 26228286 26228657 2075 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7321"; repStart "0"; chr21 rmsk exon 26228655 26228867 1238 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr21 rmsk exon 26228869 26229504 3787 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr21 rmsk exon 26229507 26230384 4941 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr21 rmsk exon 26230379 26233074 14004 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2"; repStart "-4726"; chr21 rmsk exon 26233084 26233487 2631 - . gene_id "HERVH_21q21.3a"; transcript_id "HERVH_21q21.3a"; locus "HERVH_21q21.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1205"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_21q21.3c ### chr21 rmsk gene 26609900 26611288 . + . gene_id "ERVLB4_21q21.3c"; transcript_id "ERVLB4_21q21.3c"; locus "ERVLB4_21q21.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1730"; model_cov "1070"; model_pct "18.7"; chr21 rmsk exon 26609900 26610171 259 + . gene_id "ERVLB4_21q21.3c"; transcript_id "ERVLB4_21q21.3c"; locus "ERVLB4_21q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1730"; repClass "LTR"; repEnd "3559"; repFamily "ERVL"; repLeft "-2155"; repStart "3265"; chr21 rmsk exon 26610442 26610908 708 + . gene_id "ERVLB4_21q21.3c"; transcript_id "ERVLB4_21q21.3c"; locus "ERVLB4_21q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1730"; repClass "LTR"; repEnd "3733"; repFamily "ERVL"; repLeft "-1981"; repStart "3245"; chr21 rmsk exon 26611101 26611288 362 + . gene_id "ERVLB4_21q21.3c"; transcript_id "ERVLB4_21q21.3c"; locus "ERVLB4_21q21.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1730"; repClass "LTR"; repEnd "4309"; repFamily "ERVL"; repLeft "-1405"; repStart "4021"; ### MER4B_21q21.3a ### chr21 rmsk gene 26688806 26689646 . - . gene_id "MER4B_21q21.3a"; transcript_id "MER4B_21q21.3a"; locus "MER4B_21q21.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0464"; model_cov "842"; model_pct "12.5"; chr21 rmsk exon 26688806 26689646 5779 - . gene_id "MER4B_21q21.3a"; transcript_id "MER4B_21q21.3a"; locus "MER4B_21q21.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0464"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "3861"; repStart "-2055"; ### ERV316A3_21q21.3a ### chr21 rmsk gene 26740457 26741930 . - . gene_id "ERV316A3_21q21.3a"; transcript_id "ERV316A3_21q21.3a"; locus "ERV316A3_21q21.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2697"; model_cov "1042"; model_pct "19.9"; chr21 rmsk exon 26740457 26741410 2165 - . gene_id "ERV316A3_21q21.3a"; transcript_id "ERV316A3_21q21.3a"; locus "ERV316A3_21q21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2697"; repClass "LTR"; repEnd "4480"; repFamily "ERVL"; repLeft "3438"; repStart "-746"; chr21 rmsk exon 26741525 26741930 1046 - . gene_id "ERV316A3_21q21.3a"; transcript_id "ERV316A3_21q21.3a"; locus "ERV316A3_21q21.3a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2697"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERVLE_21q21.3a ### chr21 rmsk gene 26756508 26759501 . - . gene_id "ERVLE_21q21.3a"; transcript_id "ERVLE_21q21.3a"; locus "ERVLE_21q21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3535"; model_cov "3119"; model_pct "55.0"; chr21 rmsk exon 26756508 26759501 4289 - . gene_id "ERVLE_21q21.3a"; transcript_id "ERVLE_21q21.3a"; locus "ERVLE_21q21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3535"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "1356"; repStart "-1192"; ### HERVW_21q21.3 ### chr21 rmsk gene 26854437 26862006 . + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0299"; model_cov "6065"; model_pct "70.3"; chr21 rmsk exon 26854437 26855185 6131 + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0299"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 26855186 26857100 14725 + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0299"; repClass "LTR"; repEnd "1865"; repFamily "ERV1"; repLeft "-6761"; repStart "1"; chr21 rmsk exon 26857097 26860723 30680 + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0299"; repClass "LTR"; repEnd "5322"; repFamily "ERV1"; repLeft "-3304"; repStart "1679"; chr21 rmsk exon 26860715 26861271 4526 + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0299"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8068"; chr21 rmsk exon 26861272 26862006 6291 + . gene_id "HERVW_21q21.3"; transcript_id "HERVW_21q21.3"; locus "HERVW_21q21.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0299"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_21q21.3b ### chr21 rmsk gene 27038843 27040543 . + . gene_id "MER4B_21q21.3b"; transcript_id "MER4B_21q21.3b"; locus "MER4B_21q21.3b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0465"; model_cov "1050"; model_pct "15.5"; chr21 rmsk exon 27038843 27039013 1006 + . gene_id "MER4B_21q21.3b"; transcript_id "MER4B_21q21.3b"; locus "MER4B_21q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0465"; repClass "LTR"; repEnd "3952"; repFamily "ERV1"; repLeft "-2806"; repStart "3780"; chr21 rmsk exon 27039334 27039618 1545 + . gene_id "MER4B_21q21.3b"; transcript_id "MER4B_21q21.3b"; locus "MER4B_21q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0465"; repClass "LTR"; repEnd "4673"; repFamily "ERV1"; repLeft "-2085"; repStart "4391"; chr21 rmsk exon 27039947 27040543 2677 + . gene_id "MER4B_21q21.3b"; transcript_id "MER4B_21q21.3b"; locus "MER4B_21q21.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0465"; repClass "LTR"; repEnd "4711"; repFamily "ERV1"; repLeft "-2047"; repStart "4115"; ### HERVL_21q21.3a ### chr21 rmsk gene 27051910 27059110 . + . gene_id "HERVL_21q21.3a"; transcript_id "HERVL_21q21.3a"; locus "HERVL_21q21.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1238"; model_cov "5653"; model_pct "100.0"; chr21 rmsk exon 27051910 27052304 3016 + . gene_id "HERVL_21q21.3a"; transcript_id "HERVL_21q21.3a"; locus "HERVL_21q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1238"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "3"; chr21 rmsk exon 27052959 27058576 32916 + . gene_id "HERVL_21q21.3a"; transcript_id "HERVL_21q21.3a"; locus "HERVL_21q21.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1238"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr21 rmsk exon 27058577 27058969 2606 + . gene_id "HERVL_21q21.3a"; transcript_id "HERVL_21q21.3a"; locus "HERVL_21q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1238"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "1"; chr21 rmsk exon 27059027 27059110 379 + . gene_id "HERVL_21q21.3a"; transcript_id "HERVL_21q21.3a"; locus "HERVL_21q21.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1238"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "361"; ### HERVL_21q21.3b ### chr21 rmsk gene 27316674 27320573 . - . gene_id "HERVL_21q21.3b"; transcript_id "HERVL_21q21.3b"; locus "HERVL_21q21.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1239"; model_cov "3568"; model_pct "63.1"; chr21 rmsk exon 27316674 27320145 23922 - . gene_id "HERVL_21q21.3b"; transcript_id "HERVL_21q21.3b"; locus "HERVL_21q21.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1239"; repClass "LTR"; repEnd "3569"; repFamily "ERVL"; repLeft "1"; repStart "-2085"; chr21 rmsk exon 27320146 27320573 2973 - . gene_id "HERVL_21q21.3b"; transcript_id "HERVL_21q21.3b"; locus "HERVL_21q21.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1239"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_21q21.3b ### chr21 rmsk gene 27365626 27366597 . - . gene_id "ERV316A3_21q21.3b"; transcript_id "ERV316A3_21q21.3b"; locus "ERV316A3_21q21.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2699"; model_cov "907"; model_pct "17.4"; chr21 rmsk exon 27365626 27366325 1545 - . gene_id "ERV316A3_21q21.3b"; transcript_id "ERV316A3_21q21.3b"; locus "ERV316A3_21q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2699"; repClass "LTR"; repEnd "4144"; repFamily "ERVL"; repLeft "3403"; repStart "-1082"; chr21 rmsk exon 27366431 27366597 427 - . gene_id "ERV316A3_21q21.3b"; transcript_id "ERV316A3_21q21.3b"; locus "ERV316A3_21q21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2699"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "2825"; repStart "-2235"; ### ERV316A3_21q21.3c ### chr21 rmsk gene 27368499 27370523 . - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2700"; model_cov "1154"; model_pct "22.1"; chr21 rmsk exon 27368499 27368708 790 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "3005"; repFamily "ERVL"; repLeft "2794"; repStart "-2221"; chr21 rmsk exon 27368813 27369248 728 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "2638"; repFamily "ERVL"; repLeft "2188"; repStart "-2588"; chr21 rmsk exon 27369433 27369617 341 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "895"; repFamily "ERVL"; repLeft "709"; repStart "-4331"; chr21 rmsk exon 27369834 27370068 382 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "459"; repFamily "ERVL"; repLeft "219"; repStart "-4767"; chr21 rmsk exon 27370111 27370177 340 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "398"; repFamily "ERVL"; repLeft "331"; repStart "-4828"; chr21 rmsk exon 27370267 27370523 639 - . gene_id "ERV316A3_21q21.3c"; transcript_id "ERV316A3_21q21.3c"; locus "ERV316A3_21q21.3c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2700"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "157"; repStart "-8"; ### HERVL_21q21.3c ### chr21 rmsk gene 27409512 27411536 . - . gene_id "HERVL_21q21.3c"; transcript_id "HERVL_21q21.3c"; locus "HERVL_21q21.3c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1240"; model_cov "1498"; model_pct "26.5"; chr21 rmsk exon 27409512 27410058 2114 - . gene_id "HERVL_21q21.3c"; transcript_id "HERVL_21q21.3c"; locus "HERVL_21q21.3c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1240"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chr21 rmsk exon 27410059 27410677 4236 - . gene_id "HERVL_21q21.3c"; transcript_id "HERVL_21q21.3c"; locus "HERVL_21q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1240"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5034"; repStart "0"; chr21 rmsk exon 27410667 27411536 6606 - . gene_id "HERVL_21q21.3c"; transcript_id "HERVL_21q21.3c"; locus "HERVL_21q21.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1240"; repClass "LTR"; repEnd "3130"; repFamily "ERVL"; repLeft "2252"; repStart "-2524"; ### HERVFRD_21q21.3 ### chr21 rmsk gene 27721679 27727559 . - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0181"; model_cov "4724"; model_pct "65.6"; chr21 rmsk exon 27721679 27722360 3793 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0181"; repClass "LTR"; repEnd "699"; repFamily "ERV1"; repLeft "1"; repStart "-35"; chr21 rmsk exon 27722363 27722750 2496 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0181"; repClass "LTR"; repEnd "7195"; repFamily "ERV1"; repLeft "6840"; repStart "-10"; chr21 rmsk exon 27722744 27724357 6258 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0181"; repClass "LTR"; repEnd "6152"; repFamily "ERV1"; repLeft "4317"; repStart "-1053"; chr21 rmsk exon 27724349 27725041 3093 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0181"; repClass "LTR"; repEnd "3473"; repFamily "ERV1"; repLeft "2788"; repStart "-3732"; chr21 rmsk exon 27725038 27726733 6642 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0181"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "1"; repStart "-5355"; chr21 rmsk exon 27726852 27727559 3911 - . gene_id "HERVFRD_21q21.3"; transcript_id "HERVFRD_21q21.3"; locus "HERVFRD_21q21.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0181"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "7"; repStart "-12"; ### ERV316A3_21q21.3d ### chr21 rmsk gene 27801320 27801966 . + . gene_id "ERV316A3_21q21.3d"; transcript_id "ERV316A3_21q21.3d"; locus "ERV316A3_21q21.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2701"; model_cov "643"; model_pct "12.3"; chr21 rmsk exon 27801320 27801966 831 + . gene_id "ERV316A3_21q21.3d"; transcript_id "ERV316A3_21q21.3d"; locus "ERV316A3_21q21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2701"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-1894"; repStart "2689"; ### HERVL_21q21.3d ### chr21 rmsk gene 28027247 28029958 . + . gene_id "HERVL_21q21.3d"; transcript_id "HERVL_21q21.3d"; locus "HERVL_21q21.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1242"; model_cov "2299"; model_pct "40.7"; chr21 rmsk exon 28027247 28029521 16997 + . gene_id "HERVL_21q21.3d"; transcript_id "HERVL_21q21.3d"; locus "HERVL_21q21.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1242"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3355"; chr21 rmsk exon 28029522 28029958 2996 + . gene_id "HERVL_21q21.3d"; transcript_id "HERVL_21q21.3d"; locus "HERVL_21q21.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1242"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL_21q21.3e ### chr21 rmsk gene 28037098 28040885 . - . gene_id "HERVL_21q21.3e"; transcript_id "HERVL_21q21.3e"; locus "HERVL_21q21.3e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1243"; model_cov "3350"; model_pct "59.3"; chr21 rmsk exon 28037098 28040436 24109 - . gene_id "HERVL_21q21.3e"; transcript_id "HERVL_21q21.3e"; locus "HERVL_21q21.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1243"; repClass "LTR"; repEnd "3351"; repFamily "ERVL"; repLeft "1"; repStart "-2303"; chr21 rmsk exon 28040437 28040885 3170 - . gene_id "HERVL_21q21.3e"; transcript_id "HERVL_21q21.3e"; locus "HERVL_21q21.3e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1243"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_21q21.3d ### chr21 rmsk gene 28041568 28043841 . - . gene_id "ERVLB4_21q21.3d"; transcript_id "ERVLB4_21q21.3d"; locus "ERVLB4_21q21.3d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1732"; model_cov "1401"; model_pct "24.5"; chr21 rmsk exon 28041568 28042016 1911 - . gene_id "ERVLB4_21q21.3d"; transcript_id "ERVLB4_21q21.3d"; locus "ERVLB4_21q21.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1732"; repClass "LTR"; repEnd "484"; repFamily "ERVL"; repLeft "1"; repStart "-36"; chr21 rmsk exon 28042060 28042889 4538 - . gene_id "ERVLB4_21q21.3d"; transcript_id "ERVLB4_21q21.3d"; locus "ERVLB4_21q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1732"; repClass "LTR"; repEnd "5486"; repFamily "ERVL"; repLeft "4650"; repStart "-228"; chr21 rmsk exon 28042886 28043426 2546 - . gene_id "ERVLB4_21q21.3d"; transcript_id "ERVLB4_21q21.3d"; locus "ERVLB4_21q21.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1732"; repClass "LTR"; repEnd "570"; repFamily "ERVL"; repLeft "5"; repStart "-5144"; chr21 rmsk exon 28043471 28043841 1001 - . gene_id "ERVLB4_21q21.3d"; transcript_id "ERVLB4_21q21.3d"; locus "ERVLB4_21q21.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1732"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "3"; repStart "-116"; ### HERVH_21q21.3b ### chr21 rmsk gene 28161434 28166924 . + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1206"; model_cov "4587"; model_pct "59.5"; chr21 rmsk exon 28161434 28161842 2648 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr21 rmsk exon 28161845 28162310 2933 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr21 rmsk exon 28162365 28164622 14687 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chr21 rmsk exon 28164602 28164748 910 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr21 rmsk exon 28164739 28165243 3459 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr21 rmsk exon 28165248 28165901 4414 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4490"; chr21 rmsk exon 28165885 28166119 1322 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chr21 rmsk exon 28166120 28166497 2424 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr21 rmsk exon 28166498 28166924 2717 + . gene_id "HERVH_21q21.3b"; transcript_id "HERVH_21q21.3b"; locus "HERVH_21q21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1206"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_21q21.3f ### chr21 rmsk gene 28217652 28220519 . - . gene_id "HERVL_21q21.3f"; transcript_id "HERVL_21q21.3f"; locus "HERVL_21q21.3f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1244"; model_cov "2069"; model_pct "36.6"; chr21 rmsk exon 28217652 28218106 3014 - . gene_id "HERVL_21q21.3f"; transcript_id "HERVL_21q21.3f"; locus "HERVL_21q21.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1244"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr21 rmsk exon 28218109 28220163 16073 - . gene_id "HERVL_21q21.3f"; transcript_id "HERVL_21q21.3f"; locus "HERVL_21q21.3f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1244"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "3583"; repStart "-2"; chr21 rmsk exon 28220165 28220519 2230 - . gene_id "HERVL_21q21.3f"; transcript_id "HERVL_21q21.3f"; locus "HERVL_21q21.3f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1244"; repClass "LTR"; repEnd "319"; repFamily "ERVL"; repLeft "-70"; repStart "-125"; ### ERVLE_21q21.3b ### chr21 rmsk gene 28241577 28242260 . + . gene_id "ERVLE_21q21.3b"; transcript_id "ERVLE_21q21.3b"; locus "ERVLE_21q21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3538"; model_cov "706"; model_pct "12.5"; chr21 rmsk exon 28241577 28242260 1507 + . gene_id "ERVLE_21q21.3b"; transcript_id "ERVLE_21q21.3b"; locus "ERVLE_21q21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3538"; repClass "LTR"; repEnd "5126"; repFamily "ERVL"; repLeft "-541"; repStart "4420"; ### HERVL_21q21.3g ### chr21 rmsk gene 28300934 28307279 . + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1245"; model_cov "5225"; model_pct "92.4"; chr21 rmsk exon 28300934 28301380 3450 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr21 rmsk exon 28301381 28301504 20217 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "124"; repFamily "ERVL"; repLeft "-5530"; repStart "1"; chr21 rmsk exon 28301777 28304339 20217 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "2698"; repFamily "ERVL"; repLeft "-2956"; repStart "125"; chr21 rmsk exon 28304339 28304470 1027 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "3197"; repFamily "ERVL"; repLeft "-2457"; repStart "3066"; chr21 rmsk exon 28304466 28304565 792 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "4018"; repFamily "ERVL"; repLeft "-1636"; repStart "3919"; chr21 rmsk exon 28304576 28306602 15596 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "4717"; repFamily "ERVL"; repLeft "-937"; repStart "2691"; chr21 rmsk exon 28306601 28306857 1622 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "5379"; chr21 rmsk exon 28306860 28307279 2899 + . gene_id "HERVL_21q21.3g"; transcript_id "HERVL_21q21.3g"; locus "HERVL_21q21.3g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1245"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL18_21q21.3 ### chr21 rmsk gene 28393337 28396827 . + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0143"; model_cov "2660"; model_pct "44.0"; chr21 rmsk exon 28393337 28393715 2117 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr21 rmsk exon 28393742 28394180 2131 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "450"; repFamily "ERVL"; repLeft "-5597"; repStart "9"; chr21 rmsk exon 28394179 28394765 1974 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "1809"; repFamily "ERVL"; repLeft "-4238"; repStart "1150"; chr21 rmsk exon 28394767 28394964 1325 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "2334"; repFamily "ERVL"; repLeft "-3713"; repStart "2120"; chr21 rmsk exon 28394987 28395049 382 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2390"; chr21 rmsk exon 28395049 28395893 5287 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-2468"; repStart "2720"; chr21 rmsk exon 28395896 28396320 2720 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "4819"; repFamily "ERVL"; repLeft "-1228"; repStart "4394"; chr21 rmsk exon 28396408 28396827 1776 + . gene_id "HERVL18_21q21.3"; transcript_id "HERVL18_21q21.3"; locus "HERVL18_21q21.3"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0143"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_21q21.3e ### chr21 rmsk gene 28455897 28457203 . - . gene_id "ERV316A3_21q21.3e"; transcript_id "ERV316A3_21q21.3e"; locus "ERV316A3_21q21.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2703"; model_cov "735"; model_pct "14.1"; chr21 rmsk exon 28455897 28456314 580 - . gene_id "ERV316A3_21q21.3e"; transcript_id "ERV316A3_21q21.3e"; locus "ERV316A3_21q21.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2703"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-4"; repStart "0"; chr21 rmsk exon 28456456 28457203 1419 - . gene_id "ERV316A3_21q21.3e"; transcript_id "ERV316A3_21q21.3e"; locus "ERV316A3_21q21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2703"; repClass "LTR"; repEnd "5082"; repFamily "ERVL"; repLeft "4347"; repStart "-144"; ### MER101_21q21.3a ### chr21 rmsk gene 28498312 28498820 . + . gene_id "MER101_21q21.3a"; transcript_id "MER101_21q21.3a"; locus "MER101_21q21.3a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0409"; model_cov "903"; model_pct "13.6"; chr21 rmsk exon 28498312 28498820 802 + . gene_id "MER101_21q21.3a"; transcript_id "MER101_21q21.3a"; locus "MER101_21q21.3a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0409"; repClass "LTR"; repEnd "4262"; repFamily "ERV1"; repLeft "-2377"; repStart "3359"; ### MER101_21q21.3b ### chr21 rmsk gene 28498843 28499994 . + . gene_id "MER101_21q21.3b"; transcript_id "MER101_21q21.3b"; locus "MER101_21q21.3b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0410"; model_cov "982"; model_pct "14.8"; chr21 rmsk exon 28498843 28499261 942 + . gene_id "MER101_21q21.3b"; transcript_id "MER101_21q21.3b"; locus "MER101_21q21.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0410"; repClass "LTR"; repEnd "2714"; repFamily "ERV1"; repLeft "-3925"; repStart "2300"; chr21 rmsk exon 28499418 28499994 2119 + . gene_id "MER101_21q21.3b"; transcript_id "MER101_21q21.3b"; locus "MER101_21q21.3b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0410"; repClass "LTR"; repEnd "3321"; repFamily "ERV1"; repLeft "-3318"; repStart "2753"; ### MER101_21q21.3c ### chr21 rmsk gene 28567188 28570173 . + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0411"; model_cov "2342"; model_pct "35.3"; chr21 rmsk exon 28567188 28568977 2871 + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0411"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-1237"; repStart "3533"; chr21 rmsk exon 28568975 28569429 1842 + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0411"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "6165"; chr21 rmsk exon 28569434 28569476 2027 + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0411"; repClass "LTR"; repEnd "55"; repFamily "ERV1"; repLeft "-390"; repStart "5"; chr21 rmsk exon 28569517 28569707 2027 + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0411"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-208"; repStart "56"; chr21 rmsk exon 28569965 28570173 2027 + . gene_id "MER101_21q21.3c"; transcript_id "MER101_21q21.3c"; locus "MER101_21q21.3c"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0411"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-3"; repStart "238"; ### HERVL_21q21.3h ### chr21 rmsk gene 28850730 28854926 . - . gene_id "HERVL_21q21.3h"; transcript_id "HERVL_21q21.3h"; locus "HERVL_21q21.3h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1246"; model_cov "3651"; model_pct "64.6"; chr21 rmsk exon 28850730 28850804 521 - . gene_id "HERVL_21q21.3h"; transcript_id "HERVL_21q21.3h"; locus "HERVL_21q21.3h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1246"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "379"; repStart "0"; chr21 rmsk exon 28850807 28854444 26061 - . gene_id "HERVL_21q21.3h"; transcript_id "HERVL_21q21.3h"; locus "HERVL_21q21.3h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1246"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "1"; repStart "-2002"; chr21 rmsk exon 28854445 28854926 3125 - . gene_id "HERVL_21q21.3h"; transcript_id "HERVL_21q21.3h"; locus "HERVL_21q21.3h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1246"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_21q21.3i ### chr21 rmsk gene 28860058 28863503 . + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1248"; model_cov "2284"; model_pct "40.4"; chr21 rmsk exon 28860058 28860452 2743 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-47"; repStart "1"; chr21 rmsk exon 28860472 28860693 1229 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-5276"; repStart "161"; chr21 rmsk exon 28860691 28861596 6625 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "1883"; repFamily "ERVL"; repLeft "-3771"; repStart "943"; chr21 rmsk exon 28861595 28862358 8324 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "5292"; repFamily "ERVL"; repLeft "-362"; repStart "4526"; chr21 rmsk exon 28862663 28863021 8324 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5293"; chr21 rmsk exon 28863022 28863410 3080 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-42"; repStart "1"; chr21 rmsk exon 28863471 28863503 3080 + . gene_id "HERVL_21q21.3i"; transcript_id "HERVL_21q21.3i"; locus "HERVL_21q21.3i"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1248"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-9"; repStart "403"; ### ERVLB4_21q21.3e ### chr21 rmsk gene 28872592 28876120 . - . gene_id "ERVLB4_21q21.3e"; transcript_id "ERVLB4_21q21.3e"; locus "ERVLB4_21q21.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1734"; model_cov "3187"; model_pct "55.8"; chr21 rmsk exon 28872592 28873014 1708 - . gene_id "ERVLB4_21q21.3e"; transcript_id "ERVLB4_21q21.3e"; locus "ERVLB4_21q21.3e"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1734"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "-67"; chr21 rmsk exon 28873021 28876120 17761 - . gene_id "ERVLB4_21q21.3e"; transcript_id "ERVLB4_21q21.3e"; locus "ERVLB4_21q21.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1734"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "2520"; repStart "-7"; ### ERVLE_21q21.3c ### chr21 rmsk gene 30016721 30020270 . - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3542"; model_cov "2254"; model_pct "39.8"; chr21 rmsk exon 30016721 30017214 1819 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "2663"; repFamily "ERVL"; repLeft "2151"; repStart "-3004"; chr21 rmsk exon 30017361 30017902 2157 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "2158"; repFamily "ERVL"; repLeft "1622"; repStart "-3509"; chr21 rmsk exon 30018175 30018296 2157 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "1499"; repStart "-4046"; chr21 rmsk exon 30018289 30018394 518 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "2067"; repFamily "ERVL"; repLeft "1959"; repStart "-3600"; chr21 rmsk exon 30018412 30018759 1288 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "1507"; repFamily "ERVL"; repLeft "1156"; repStart "-4160"; chr21 rmsk exon 30019619 30019808 730 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "726"; repFamily "ERVL"; repLeft "535"; repStart "-4941"; chr21 rmsk exon 30019835 30020270 1479 - . gene_id "ERVLE_21q21.3c"; transcript_id "ERVLE_21q21.3c"; locus "ERVLE_21q21.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3542"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "8"; repStart "-5225"; ### HERVL40_21q22.11 ### chr21 rmsk gene 30326714 30328404 . + . gene_id "HERVL40_21q22.11"; transcript_id "HERVL40_21q22.11"; locus "HERVL40_21q22.11"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0453"; model_cov "639"; model_pct "11.6"; chr21 rmsk exon 30326714 30327262 1493 + . gene_id "HERVL40_21q22.11"; transcript_id "HERVL40_21q22.11"; locus "HERVL40_21q22.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0453"; repClass "LTR"; repEnd "1484"; repFamily "ERVL"; repLeft "-4046"; repStart "940"; chr21 rmsk exon 30327714 30327808 325 + . gene_id "HERVL40_21q22.11"; transcript_id "HERVL40_21q22.11"; locus "HERVL40_21q22.11"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0453"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-2882"; repStart "2553"; chr21 rmsk exon 30327971 30328404 1674 + . gene_id "HERVL40_21q22.11"; transcript_id "HERVL40_21q22.11"; locus "HERVL40_21q22.11"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0453"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "5"; ### MER41_21q22.11a ### chr21 rmsk gene 30414009 30414917 . + . gene_id "MER41_21q22.11a"; transcript_id "MER41_21q22.11a"; locus "MER41_21q22.11a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0538"; model_cov "647"; model_pct "10.9"; chr21 rmsk exon 30414009 30414173 1089 + . gene_id "MER41_21q22.11a"; transcript_id "MER41_21q22.11a"; locus "MER41_21q22.11a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0538"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "390"; chr21 rmsk exon 30414267 30414917 4071 + . gene_id "MER41_21q22.11a"; transcript_id "MER41_21q22.11a"; locus "MER41_21q22.11a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0538"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "-5298"; repStart "1"; ### PABLA_21q22.11a ### chr21 rmsk gene 30414888 30418715 . + . gene_id "PABLA_21q22.11a"; transcript_id "PABLA_21q22.11a"; locus "PABLA_21q22.11a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0146"; model_cov "4130"; model_pct "82.4"; chr21 rmsk exon 30414888 30415319 7089 + . gene_id "PABLA_21q22.11a"; transcript_id "PABLA_21q22.11a"; locus "PABLA_21q22.11a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0146"; repClass "LTR"; repEnd "796"; repFamily "ERV1"; repLeft "-4219"; repStart "426"; chr21 rmsk exon 30415611 30418715 13470 + . gene_id "PABLA_21q22.11a"; transcript_id "PABLA_21q22.11a"; locus "PABLA_21q22.11a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0146"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "1255"; ### ERVLE_21q22.11a ### chr21 rmsk gene 31064922 31067593 . + . gene_id "ERVLE_21q22.11a"; transcript_id "ERVLE_21q22.11a"; locus "ERVLE_21q22.11a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3545"; model_cov "1443"; model_pct "25.5"; chr21 rmsk exon 31064922 31065890 3014 + . gene_id "ERVLE_21q22.11a"; transcript_id "ERVLE_21q22.11a"; locus "ERVLE_21q22.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3545"; repClass "LTR"; repEnd "4588"; repFamily "ERVL"; repLeft "-1079"; repStart "3520"; chr21 rmsk exon 31065972 31066231 1613 + . gene_id "ERVLE_21q22.11a"; transcript_id "ERVLE_21q22.11a"; locus "ERVLE_21q22.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3545"; repClass "LTR"; repEnd "5464"; repFamily "ERVL"; repLeft "-203"; repStart "5201"; chr21 rmsk exon 31066898 31067010 1613 + . gene_id "ERVLE_21q22.11a"; transcript_id "ERVLE_21q22.11a"; locus "ERVLE_21q22.11a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3545"; repClass "LTR"; repEnd "5577"; repFamily "ERVL"; repLeft "-90"; repStart "5465"; chr21 rmsk exon 31067332 31067593 1232 + . gene_id "ERVLE_21q22.11a"; transcript_id "ERVLE_21q22.11a"; locus "ERVLE_21q22.11a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3545"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "-68"; repStart "83"; ### ERVLE_21q22.11b ### chr21 rmsk gene 31752317 31754024 . - . gene_id "ERVLE_21q22.11b"; transcript_id "ERVLE_21q22.11b"; locus "ERVLE_21q22.11b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3546"; model_cov "1538"; model_pct "27.1"; chr21 rmsk exon 31752317 31753357 1567 - . gene_id "ERVLE_21q22.11b"; transcript_id "ERVLE_21q22.11b"; locus "ERVLE_21q22.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3546"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "2147"; repStart "-2418"; chr21 rmsk exon 31753359 31753677 921 - . gene_id "ERVLE_21q22.11b"; transcript_id "ERVLE_21q22.11b"; locus "ERVLE_21q22.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3546"; repClass "LTR"; repEnd "2126"; repFamily "ERVL"; repLeft "1795"; repStart "-3541"; chr21 rmsk exon 31753914 31754024 921 - . gene_id "ERVLE_21q22.11b"; transcript_id "ERVLE_21q22.11b"; locus "ERVLE_21q22.11b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3546"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "1689"; repStart "-3873"; ### ERVLE_21q22.11c ### chr21 rmsk gene 31793593 31794429 . - . gene_id "ERVLE_21q22.11c"; transcript_id "ERVLE_21q22.11c"; locus "ERVLE_21q22.11c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3547"; model_cov "884"; model_pct "15.6"; chr21 rmsk exon 31793593 31794429 1584 - . gene_id "ERVLE_21q22.11c"; transcript_id "ERVLE_21q22.11c"; locus "ERVLE_21q22.11c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3547"; repClass "LTR"; repEnd "4174"; repFamily "ERVL"; repLeft "3290"; repStart "-1493"; ### ERV316A3_21q22.11a ### chr21 rmsk gene 31860927 31865846 . + . gene_id "ERV316A3_21q22.11a"; transcript_id "ERV316A3_21q22.11a"; locus "ERV316A3_21q22.11a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2706"; model_cov "3074"; model_pct "58.8"; chr21 rmsk exon 31860927 31861984 6836 + . gene_id "ERV316A3_21q22.11a"; transcript_id "ERV316A3_21q22.11a"; locus "ERV316A3_21q22.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2706"; repClass "LTR"; repEnd "1780"; repFamily "ERVL"; repLeft "-3446"; repStart "725"; chr21 rmsk exon 31862840 31863344 6836 + . gene_id "ERV316A3_21q22.11a"; transcript_id "ERV316A3_21q22.11a"; locus "ERV316A3_21q22.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2706"; repClass "LTR"; repEnd "2313"; repFamily "ERVL"; repLeft "-2913"; repStart "1781"; chr21 rmsk exon 31863639 31864941 6836 + . gene_id "ERV316A3_21q22.11a"; transcript_id "ERV316A3_21q22.11a"; locus "ERV316A3_21q22.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2706"; repClass "LTR"; repEnd "3608"; repFamily "ERVL"; repLeft "-1618"; repStart "2314"; chr21 rmsk exon 31865657 31865846 674 + . gene_id "ERV316A3_21q22.11a"; transcript_id "ERV316A3_21q22.11a"; locus "ERV316A3_21q22.11a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2706"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1408"; repStart "3625"; ### ERVLE_21q22.11d ### chr21 rmsk gene 32148940 32151906 . + . gene_id "ERVLE_21q22.11d"; transcript_id "ERVLE_21q22.11d"; locus "ERVLE_21q22.11d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3548"; model_cov "1964"; model_pct "34.7"; chr21 rmsk exon 32148940 32150557 7591 + . gene_id "ERVLE_21q22.11d"; transcript_id "ERVLE_21q22.11d"; locus "ERVLE_21q22.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3548"; repClass "LTR"; repEnd "5292"; repFamily "ERVL"; repLeft "-375"; repStart "3558"; chr21 rmsk exon 32150553 32150762 857 + . gene_id "ERVLE_21q22.11d"; transcript_id "ERVLE_21q22.11d"; locus "ERVLE_21q22.11d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3548"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "-4"; repStart "5433"; chr21 rmsk exon 32150994 32151118 2305 + . gene_id "ERVLE_21q22.11d"; transcript_id "ERVLE_21q22.11d"; locus "ERVLE_21q22.11d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3548"; repClass "LTR"; repEnd "125"; repFamily "ERVL"; repLeft "-503"; repStart "1"; chr21 rmsk exon 32151448 32151906 2305 + . gene_id "ERVLE_21q22.11d"; transcript_id "ERVLE_21q22.11d"; locus "ERVLE_21q22.11d"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3548"; repClass "LTR"; repEnd "575"; repFamily "ERVL"; repLeft "-53"; repStart "126"; ### MER4B_21q22.11 ### chr21 rmsk gene 32153172 32160270 . - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0466"; model_cov "4390"; model_pct "65.0"; chr21 rmsk exon 32153172 32153910 5215 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr21 rmsk exon 32154758 32155040 1649 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "6651"; repFamily "ERV1"; repLeft "6369"; repStart "-107"; chr21 rmsk exon 32155055 32156730 6753 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "4452"; repStart "-439"; chr21 rmsk exon 32156730 32157042 3055 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3744"; repStart "-2670"; chr21 rmsk exon 32157368 32157695 3055 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "3743"; repFamily "ERV1"; repLeft "3439"; repStart "-3015"; chr21 rmsk exon 32157700 32158471 7577 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "3098"; repFamily "ERV1"; repLeft "2285"; repStart "-3660"; chr21 rmsk exon 32158775 32159528 7577 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "2284"; repFamily "ERV1"; repLeft "1504"; repStart "-4474"; chr21 rmsk exon 32159529 32160270 5634 - . gene_id "MER4B_21q22.11"; transcript_id "MER4B_21q22.11"; locus "MER4B_21q22.11"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0466"; repClass "LTR"; repEnd "756"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### PABLA_21q22.11b ### chr21 rmsk gene 32556980 32557323 . + . gene_id "PABLA_21q22.11b"; transcript_id "PABLA_21q22.11b"; locus "PABLA_21q22.11b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0147"; model_cov "620"; model_pct "12.4"; chr21 rmsk exon 32556980 32557323 1928 + . gene_id "PABLA_21q22.11b"; transcript_id "PABLA_21q22.11b"; locus "PABLA_21q22.11b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0147"; repClass "LTR"; repEnd "2826"; repFamily "ERV1"; repLeft "-2189"; repStart "2206"; ### MER41_21q22.11b ### chr21 rmsk gene 32557704 32559480 . - . gene_id "MER41_21q22.11b"; transcript_id "MER41_21q22.11b"; locus "MER41_21q22.11b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0540"; model_cov "1138"; model_pct "19.1"; chr21 rmsk exon 32557704 32557824 1496 - . gene_id "MER41_21q22.11b"; transcript_id "MER41_21q22.11b"; locus "MER41_21q22.11b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0540"; repClass "LTR"; repEnd "3835"; repFamily "ERV1"; repLeft "3710"; repStart "-2111"; chr21 rmsk exon 32557792 32558225 2334 - . gene_id "MER41_21q22.11b"; transcript_id "MER41_21q22.11b"; locus "MER41_21q22.11b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0540"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "1074"; repStart "-4507"; chr21 rmsk exon 32558206 32558844 4377 - . gene_id "MER41_21q22.11b"; transcript_id "MER41_21q22.11b"; locus "MER41_21q22.11b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0540"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "1"; repStart "-5297"; chr21 rmsk exon 32558931 32559480 4001 - . gene_id "MER41_21q22.11b"; transcript_id "MER41_21q22.11b"; locus "MER41_21q22.11b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0540"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVEA_21q22.11 ### chr21 rmsk gene 32659369 32664759 . + . gene_id "HERVEA_21q22.11"; transcript_id "HERVEA_21q22.11"; locus "HERVEA_21q22.11"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0095"; model_cov "4497"; model_pct "57.3"; chr21 rmsk exon 32659369 32659826 3473 + . gene_id "HERVEA_21q22.11"; transcript_id "HERVEA_21q22.11"; locus "HERVEA_21q22.11"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0095"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 32659827 32660025 1497 + . gene_id "HERVEA_21q22.11"; transcript_id "HERVEA_21q22.11"; locus "HERVEA_21q22.11"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0095"; repClass "LTR"; repEnd "199"; repFamily "ERV1"; repLeft "-7648"; repStart "1"; chr21 rmsk exon 32660024 32664304 36713 + . gene_id "HERVEA_21q22.11"; transcript_id "HERVEA_21q22.11"; locus "HERVEA_21q22.11"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0095"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "3548"; chr21 rmsk exon 32664305 32664759 3448 + . gene_id "HERVEA_21q22.11"; transcript_id "HERVEA_21q22.11"; locus "HERVEA_21q22.11"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0095"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR25_21q22.11 ### chr21 rmsk gene 32854061 32858020 . - . gene_id "LTR25_21q22.11"; transcript_id "LTR25_21q22.11"; locus "LTR25_21q22.11"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0139"; model_cov "3454"; model_pct "48.1"; chr21 rmsk exon 32854061 32857329 18237 - . gene_id "LTR25_21q22.11"; transcript_id "LTR25_21q22.11"; locus "LTR25_21q22.11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0139"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "3914"; repStart "-1"; chr21 rmsk exon 32857638 32858020 18237 - . gene_id "LTR25_21q22.11"; transcript_id "LTR25_21q22.11"; locus "LTR25_21q22.11"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0139"; repClass "LTR"; repEnd "3913"; repFamily "ERV1"; repLeft "3732"; repStart "-3275"; ### MER41_21q22.11c ### chr21 rmsk gene 32859688 32860141 . - . gene_id "MER41_21q22.11c"; transcript_id "MER41_21q22.11c"; locus "MER41_21q22.11c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0542"; model_cov "819"; model_pct "13.8"; chr21 rmsk exon 32859688 32860141 2034 - . gene_id "MER41_21q22.11c"; transcript_id "MER41_21q22.11c"; locus "MER41_21q22.11c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0542"; repClass "LTR"; repEnd "1451"; repFamily "ERV1"; repLeft "632"; repStart "-4495"; ### ERVLE_21q22.11e ### chr21 rmsk gene 32904181 32907202 . - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3549"; model_cov "1349"; model_pct "23.8"; chr21 rmsk exon 32904181 32904296 356 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "5243"; repFamily "ERVL"; repLeft "5127"; repStart "-424"; chr21 rmsk exon 32904333 32904479 352 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "5056"; repFamily "ERVL"; repLeft "4899"; repStart "-611"; chr21 rmsk exon 32904518 32904540 2574 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "4819"; repFamily "ERVL"; repLeft "4802"; repStart "-848"; chr21 rmsk exon 32904964 32905424 2574 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "4801"; repFamily "ERVL"; repLeft "4329"; repStart "-866"; chr21 rmsk exon 32905862 32905941 2574 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "4328"; repFamily "ERVL"; repLeft "4254"; repStart "-1339"; chr21 rmsk exon 32906337 32906591 2574 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "4253"; repFamily "ERVL"; repLeft "3976"; repStart "-1414"; chr21 rmsk exon 32906992 32907202 2574 - . gene_id "ERVLE_21q22.11e"; transcript_id "ERVLE_21q22.11e"; locus "ERVLE_21q22.11e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3549"; repClass "LTR"; repEnd "3975"; repFamily "ERVL"; repLeft "3739"; repStart "-1692"; ### ERV316A3_21q22.11b ### chr21 rmsk gene 33288905 33293464 . - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2707"; model_cov "2342"; model_pct "44.8"; chr21 rmsk exon 33288905 33289194 1052 - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2707"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "146"; repStart "-4"; chr21 rmsk exon 33289297 33289633 594 - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2707"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4848"; repStart "-50"; chr21 rmsk exon 33290479 33290842 2428 - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2707"; repClass "LTR"; repEnd "4607"; repFamily "ERVL"; repLeft "4258"; repStart "-619"; chr21 rmsk exon 33291607 33293212 2428 - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2707"; repClass "LTR"; repEnd "4257"; repFamily "ERVL"; repLeft "2592"; repStart "-969"; chr21 rmsk exon 33293256 33293464 623 - . gene_id "ERV316A3_21q22.11b"; transcript_id "ERV316A3_21q22.11b"; locus "ERV316A3_21q22.11b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2707"; repClass "LTR"; repEnd "220"; repFamily "ERVL"; repLeft "5"; repStart "-218"; ### MER61_21q22.11 ### chr21 rmsk gene 34161331 34166985 . - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0371"; model_cov "4497"; model_pct "86.2"; chr21 rmsk exon 34161331 34164382 25780 - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0371"; repClass "LTR"; repEnd "5204"; repFamily "ERV1"; repLeft "2132"; repStart "-13"; chr21 rmsk exon 34165280 34165904 25780 - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0371"; repClass "LTR"; repEnd "2131"; repFamily "ERV1"; repLeft "1454"; repStart "-3086"; chr21 rmsk exon 34165930 34165972 303 - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0371"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chr21 rmsk exon 34166003 34166667 2850 - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0371"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-4510"; chr21 rmsk exon 34166668 34166985 1679 - . gene_id "MER61_21q22.11"; transcript_id "MER61_21q22.11"; locus "MER61_21q22.11"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0371"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_21q22.11 ### chr21 rmsk gene 34284739 34292383 . + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1735"; model_cov "4476"; model_pct "78.3"; chr21 rmsk exon 34284739 34285246 1812 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chr21 rmsk exon 34285251 34287225 13225 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "1952"; repFamily "ERVL"; repLeft "-3762"; repStart "1"; chr21 rmsk exon 34289483 34289937 13225 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "2439"; repFamily "ERVL"; repLeft "-3275"; repStart "1953"; chr21 rmsk exon 34289937 34290789 5202 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "3883"; repFamily "ERVL"; repLeft "-1831"; repStart "3024"; chr21 rmsk exon 34290787 34291929 7170 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4532"; chr21 rmsk exon 34291932 34292383 1674 + . gene_id "ERVLB4_21q22.11"; transcript_id "ERVLB4_21q22.11"; locus "ERVLB4_21q22.11"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1735"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-9"; repStart "-35"; ### ERVLB4_21q22.12 ### chr21 rmsk gene 35156328 35158427 . - . gene_id "ERVLB4_21q22.12"; transcript_id "ERVLB4_21q22.12"; locus "ERVLB4_21q22.12"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1736"; model_cov "1441"; model_pct "25.2"; chr21 rmsk exon 35156328 35156626 1571 - . gene_id "ERVLB4_21q22.12"; transcript_id "ERVLB4_21q22.12"; locus "ERVLB4_21q22.12"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1736"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "143"; repStart "-119"; chr21 rmsk exon 35156627 35157455 8245 - . gene_id "ERVLB4_21q22.12"; transcript_id "ERVLB4_21q22.12"; locus "ERVLB4_21q22.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1736"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4863"; repStart "0"; chr21 rmsk exon 35157840 35158427 8245 - . gene_id "ERVLB4_21q22.12"; transcript_id "ERVLB4_21q22.12"; locus "ERVLB4_21q22.12"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1736"; repClass "LTR"; repEnd "4862"; repFamily "ERVL"; repLeft "4272"; repStart "-852"; ### HERVL_21q22.12a ### chr21 rmsk gene 35432115 35434686 . - . gene_id "HERVL_21q22.12a"; transcript_id "HERVL_21q22.12a"; locus "HERVL_21q22.12a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1249"; model_cov "2036"; model_pct "36.0"; chr21 rmsk exon 35432115 35432193 262 - . gene_id "HERVL_21q22.12a"; transcript_id "HERVL_21q22.12a"; locus "HERVL_21q22.12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1249"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "371"; repStart "0"; chr21 rmsk exon 35432194 35434234 16147 - . gene_id "HERVL_21q22.12a"; transcript_id "HERVL_21q22.12a"; locus "HERVL_21q22.12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1249"; repClass "LTR"; repEnd "2037"; repFamily "ERVL"; repLeft "1"; repStart "-3617"; chr21 rmsk exon 35434248 35434686 3624 - . gene_id "HERVL_21q22.12a"; transcript_id "HERVL_21q22.12a"; locus "HERVL_21q22.12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1249"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "1"; repStart "-1"; ### ERV316A3_21q22.12a ### chr21 rmsk gene 35714945 35715739 . + . gene_id "ERV316A3_21q22.12a"; transcript_id "ERV316A3_21q22.12a"; locus "ERV316A3_21q22.12a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2708"; model_cov "676"; model_pct "12.9"; chr21 rmsk exon 35714945 35715061 312 + . gene_id "ERV316A3_21q22.12a"; transcript_id "ERV316A3_21q22.12a"; locus "ERV316A3_21q22.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2708"; repClass "LTR"; repEnd "1103"; repFamily "ERVL"; repLeft "-4123"; repStart "993"; chr21 rmsk exon 35715150 35715739 2191 + . gene_id "ERV316A3_21q22.12a"; transcript_id "ERV316A3_21q22.12a"; locus "ERV316A3_21q22.12a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2708"; repClass "LTR"; repEnd "2790"; repFamily "ERVL"; repLeft "-2436"; repStart "2224"; ### ERV316A3_21q22.12b ### chr21 rmsk gene 35833358 35839688 . + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2709"; model_cov "2929"; model_pct "56.0"; chr21 rmsk exon 35833358 35833730 751 + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2709"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "31"; chr21 rmsk exon 35833734 35833816 1064 + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2709"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "-4851"; repStart "273"; chr21 rmsk exon 35834083 35834665 1064 + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2709"; repClass "LTR"; repEnd "739"; repFamily "ERVL"; repLeft "-4487"; repStart "146"; chr21 rmsk exon 35836406 35837059 1024 + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2709"; repClass "LTR"; repEnd "1661"; repFamily "ERVL"; repLeft "-3565"; repStart "990"; chr21 rmsk exon 35838131 35839688 3784 + . gene_id "ERV316A3_21q22.12b"; transcript_id "ERV316A3_21q22.12b"; locus "ERV316A3_21q22.12b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2709"; repClass "LTR"; repEnd "3579"; repFamily "ERVL"; repLeft "-1647"; repStart "2016"; ### HERVL_21q22.12b ### chr21 rmsk gene 35962624 35966236 . - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1250"; model_cov "2150"; model_pct "38.0"; chr21 rmsk exon 35962624 35962748 510 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "2838"; repFamily "ERVL"; repLeft "2713"; repStart "-2816"; chr21 rmsk exon 35962982 35963692 1242 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "2716"; repFamily "ERVL"; repLeft "1946"; repStart "-2938"; chr21 rmsk exon 35964421 35964610 418 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "1892"; repFamily "ERVL"; repLeft "1705"; repStart "-3762"; chr21 rmsk exon 35964780 35965113 1051 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "1691"; repFamily "ERVL"; repLeft "1369"; repStart "-3963"; chr21 rmsk exon 35965410 35965743 1051 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "1368"; repFamily "ERVL"; repLeft "1016"; repStart "-4286"; chr21 rmsk exon 35965858 35966236 311 - . gene_id "HERVL_21q22.12b"; transcript_id "HERVL_21q22.12b"; locus "HERVL_21q22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1250"; repClass "LTR"; repEnd "819"; repFamily "ERVL"; repLeft "425"; repStart "-4835"; ### MER4B_21q22.12 ### chr21 rmsk gene 36095300 36098036 . + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0467"; model_cov "873"; model_pct "12.9"; chr21 rmsk exon 36095300 36095430 651 + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0467"; repClass "LTR"; repEnd "4127"; repFamily "ERV1"; repLeft "-2631"; repStart "4021"; chr21 rmsk exon 36095723 36095835 651 + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0467"; repClass "LTR"; repEnd "4232"; repFamily "ERV1"; repLeft "-2526"; repStart "4128"; chr21 rmsk exon 36096392 36096465 422 + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0467"; repClass "LTR"; repEnd "4261"; repFamily "ERV1"; repLeft "-2497"; repStart "4187"; chr21 rmsk exon 36096495 36096847 2986 + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0467"; repClass "LTR"; repEnd "4598"; repFamily "ERV1"; repLeft "-2160"; repStart "4250"; chr21 rmsk exon 36097785 36098036 2986 + . gene_id "MER4B_21q22.12"; transcript_id "MER4B_21q22.12"; locus "MER4B_21q22.12"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0467"; repClass "LTR"; repEnd "4840"; repFamily "ERV1"; repLeft "-1918"; repStart "4599"; ### HUERSP3B_21q22.12 ### chr21 rmsk gene 36098211 36104237 . + . gene_id "HUERSP3B_21q22.12"; transcript_id "HUERSP3B_21q22.12"; locus "HUERSP3B_21q22.12"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0134"; model_cov "4177"; model_pct "56.3"; chr21 rmsk exon 36098211 36099320 8632 + . gene_id "HUERSP3B_21q22.12"; transcript_id "HUERSP3B_21q22.12"; locus "HUERSP3B_21q22.12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0134"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "1524"; chr21 rmsk exon 36101087 36101433 2116 + . gene_id "HUERSP3B_21q22.12"; transcript_id "HUERSP3B_21q22.12"; locus "HUERSP3B_21q22.12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0134"; repClass "LTR"; repEnd "3412"; repFamily "ERV1"; repLeft "-4006"; repStart "3073"; chr21 rmsk exon 36101427 36102508 14593 + . gene_id "HUERSP3B_21q22.12"; transcript_id "HUERSP3B_21q22.12"; locus "HUERSP3B_21q22.12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0134"; repClass "LTR"; repEnd "5266"; repFamily "ERV1"; repLeft "-2152"; repStart "3973"; chr21 rmsk exon 36102802 36104237 14593 + . gene_id "HUERSP3B_21q22.12"; transcript_id "HUERSP3B_21q22.12"; locus "HUERSP3B_21q22.12"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0134"; repClass "LTR"; repEnd "6694"; repFamily "ERV1"; repLeft "-724"; repStart "5267"; ### HERVIP10FH_21q22.12 ### chr21 rmsk gene 36104268 36109248 . + . gene_id "HERVIP10FH_21q22.12"; transcript_id "HERVIP10FH_21q22.12"; locus "HERVIP10FH_21q22.12"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0193"; model_cov "7555"; model_pct "100.0"; chr21 rmsk exon 36104268 36104752 3523 + . gene_id "HERVIP10FH_21q22.12"; transcript_id "HERVIP10FH_21q22.12"; locus "HERVIP10FH_21q22.12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0193"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chr21 rmsk exon 36104756 36109248 19115 + . gene_id "HERVIP10FH_21q22.12"; transcript_id "HERVIP10FH_21q22.12"; locus "HERVIP10FH_21q22.12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0193"; repClass "LTR"; repEnd "4921"; repFamily "ERV1"; repLeft "-181"; repStart "-2634"; ### ERV316A3_21q22.13 ### chr21 rmsk gene 37304335 37305217 . - . gene_id "ERV316A3_21q22.13"; transcript_id "ERV316A3_21q22.13"; locus "ERV316A3_21q22.13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2711"; model_cov "560"; model_pct "10.7"; chr21 rmsk exon 37304335 37304813 1659 - . gene_id "ERV316A3_21q22.13"; transcript_id "ERV316A3_21q22.13"; locus "ERV316A3_21q22.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2711"; repClass "LTR"; repEnd "4415"; repFamily "ERVL"; repLeft "3911"; repStart "-811"; chr21 rmsk exon 37305161 37305217 1659 - . gene_id "ERV316A3_21q22.13"; transcript_id "ERV316A3_21q22.13"; locus "ERV316A3_21q22.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2711"; repClass "LTR"; repEnd "3910"; repFamily "ERVL"; repLeft "3854"; repStart "-1316"; ### HERVH_21q22.13 ### chr21 rmsk gene 37587926 37592508 . - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1207"; model_cov "4108"; model_pct "53.3"; chr21 rmsk exon 37587926 37588923 3515 - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1207"; repClass "LTR"; repEnd "4437"; repFamily "ERV1"; repLeft "3478"; repStart "-3276"; chr21 rmsk exon 37588914 37589082 905 - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1207"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3126"; repStart "-4423"; chr21 rmsk exon 37589055 37589412 16050 - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1207"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "2635"; repStart "-4726"; chr21 rmsk exon 37589685 37592093 16050 - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1207"; repClass "LTR"; repEnd "2634"; repFamily "ERV1"; repLeft "1"; repStart "-5079"; chr21 rmsk exon 37592097 37592508 2764 - . gene_id "HERVH_21q22.13"; transcript_id "HERVH_21q22.13"; locus "HERVH_21q22.13"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1207"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_21q22.13a ### chr21 rmsk gene 37601439 37603328 . - . gene_id "ERVLE_21q22.13a"; transcript_id "ERVLE_21q22.13a"; locus "ERVLE_21q22.13a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3550"; model_cov "1370"; model_pct "24.2"; chr21 rmsk exon 37601439 37602470 2217 - . gene_id "ERVLE_21q22.13a"; transcript_id "ERVLE_21q22.13a"; locus "ERVLE_21q22.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3550"; repClass "LTR"; repEnd "4838"; repFamily "ERVL"; repLeft "3775"; repStart "-829"; chr21 rmsk exon 37603015 37603328 673 - . gene_id "ERVLE_21q22.13a"; transcript_id "ERVLE_21q22.13a"; locus "ERVLE_21q22.13a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3550"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "3335"; repStart "-2025"; ### ERVLB4_21q22.13 ### chr21 rmsk gene 37770395 37771545 . + . gene_id "ERVLB4_21q22.13"; transcript_id "ERVLB4_21q22.13"; locus "ERVLB4_21q22.13"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1737"; model_cov "769"; model_pct "13.5"; chr21 rmsk exon 37770395 37771145 2811 + . gene_id "ERVLB4_21q22.13"; transcript_id "ERVLB4_21q22.13"; locus "ERVLB4_21q22.13"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1737"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4945"; chr21 rmsk exon 37771155 37771545 1291 + . gene_id "ERVLB4_21q22.13"; transcript_id "ERVLB4_21q22.13"; locus "ERVLB4_21q22.13"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1737"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "13"; ### ERVLE_21q22.13b ### chr21 rmsk gene 37925617 37928482 . - . gene_id "ERVLE_21q22.13b"; transcript_id "ERVLE_21q22.13b"; locus "ERVLE_21q22.13b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3552"; model_cov "957"; model_pct "16.9"; chr21 rmsk exon 37925617 37926122 1249 - . gene_id "ERVLE_21q22.13b"; transcript_id "ERVLE_21q22.13b"; locus "ERVLE_21q22.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3552"; repClass "LTR"; repEnd "5042"; repFamily "ERVL"; repLeft "4508"; repStart "-625"; chr21 rmsk exon 37927945 37928067 310 - . gene_id "ERVLE_21q22.13b"; transcript_id "ERVLE_21q22.13b"; locus "ERVLE_21q22.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3552"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "3402"; repStart "-2140"; chr21 rmsk exon 37928181 37928482 1090 - . gene_id "ERVLE_21q22.13b"; transcript_id "ERVLE_21q22.13b"; locus "ERVLE_21q22.13b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3552"; repClass "LTR"; repEnd "3401"; repFamily "ERVL"; repLeft "3103"; repStart "-2266"; ### HERV3_21q22.13 ### chr21 rmsk gene 38224043 38229805 . - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0080"; model_cov "4880"; model_pct "57.9"; chr21 rmsk exon 38224043 38224444 1516 - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0080"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "214"; repStart "0"; chr21 rmsk exon 38224564 38225483 7227 - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0080"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7509"; repStart "0"; chr21 rmsk exon 38225477 38228007 18836 - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0080"; repClass "LTR"; repEnd "6300"; repFamily "ERV1"; repLeft "3774"; repStart "-2126"; chr21 rmsk exon 38227979 38229403 9711 - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0080"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "2"; repStart "-6987"; chr21 rmsk exon 38229404 38229805 1428 - . gene_id "HERV3_21q22.13"; transcript_id "HERV3_21q22.13"; locus "HERV3_21q22.13"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0080"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "214"; repStart "0"; ### ERV316A3_21q22.2a ### chr21 rmsk gene 38338593 38340596 . + . gene_id "ERV316A3_21q22.2a"; transcript_id "ERV316A3_21q22.2a"; locus "ERV316A3_21q22.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2712"; model_cov "862"; model_pct "16.5"; chr21 rmsk exon 38338593 38339035 1445 + . gene_id "ERV316A3_21q22.2a"; transcript_id "ERV316A3_21q22.2a"; locus "ERV316A3_21q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2712"; repClass "LTR"; repEnd "2212"; repFamily "ERVL"; repLeft "-3014"; repStart "1738"; chr21 rmsk exon 38339576 38339789 1445 + . gene_id "ERV316A3_21q22.2a"; transcript_id "ERV316A3_21q22.2a"; locus "ERV316A3_21q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2712"; repClass "LTR"; repEnd "2423"; repFamily "ERVL"; repLeft "-2803"; repStart "2213"; chr21 rmsk exon 38340117 38340289 604 + . gene_id "ERV316A3_21q22.2a"; transcript_id "ERV316A3_21q22.2a"; locus "ERV316A3_21q22.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2712"; repClass "LTR"; repEnd "4043"; repFamily "ERVL"; repLeft "-1183"; repStart "3865"; chr21 rmsk exon 38340302 38340596 930 + . gene_id "ERV316A3_21q22.2a"; transcript_id "ERV316A3_21q22.2a"; locus "ERV316A3_21q22.2a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2712"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-15"; repStart "131"; ### PRIMA41_21q22.2 ### chr21 rmsk gene 39358287 39359961 . + . gene_id "PRIMA41_21q22.2"; transcript_id "PRIMA41_21q22.2"; locus "PRIMA41_21q22.2"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0160"; model_cov "1176"; model_pct "15.2"; chr21 rmsk exon 39358287 39358353 361 + . gene_id "PRIMA41_21q22.2"; transcript_id "PRIMA41_21q22.2"; locus "PRIMA41_21q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0160"; repClass "LTR"; repEnd "6662"; repFamily "ERV1"; repLeft "-1094"; repStart "6583"; chr21 rmsk exon 39358522 39359592 8432 + . gene_id "PRIMA41_21q22.2"; transcript_id "PRIMA41_21q22.2"; locus "PRIMA41_21q22.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0160"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "6659"; chr21 rmsk exon 39359593 39359961 2415 + . gene_id "PRIMA41_21q22.2"; transcript_id "PRIMA41_21q22.2"; locus "PRIMA41_21q22.2"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0160"; repClass "LTR"; repEnd "352"; repFamily "ERV1"; repLeft "-169"; repStart "1"; ### ERV316A3_21q22.2b ### chr21 rmsk gene 39572047 39574163 . - . gene_id "ERV316A3_21q22.2b"; transcript_id "ERV316A3_21q22.2b"; locus "ERV316A3_21q22.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2713"; model_cov "1454"; model_pct "27.8"; chr21 rmsk exon 39572047 39572372 887 - . gene_id "ERV316A3_21q22.2b"; transcript_id "ERV316A3_21q22.2b"; locus "ERV316A3_21q22.2b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2713"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "97"; repStart "-8"; chr21 rmsk exon 39572698 39573634 3355 - . gene_id "ERV316A3_21q22.2b"; transcript_id "ERV316A3_21q22.2b"; locus "ERV316A3_21q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2713"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "4233"; repStart "-52"; chr21 rmsk exon 39573675 39574163 3355 - . gene_id "ERV316A3_21q22.2b"; transcript_id "ERV316A3_21q22.2b"; locus "ERV316A3_21q22.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2713"; repClass "LTR"; repEnd "4232"; repFamily "ERVL"; repLeft "3719"; repStart "-994"; ### ERV316A3_21q22.2c ### chr21 rmsk gene 39710767 39715002 . - . gene_id "ERV316A3_21q22.2c"; transcript_id "ERV316A3_21q22.2c"; locus "ERV316A3_21q22.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2714"; model_cov "3127"; model_pct "59.8"; chr21 rmsk exon 39710767 39711039 1068 - . gene_id "ERV316A3_21q22.2c"; transcript_id "ERV316A3_21q22.2c"; locus "ERV316A3_21q22.2c"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2714"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "170"; repStart "-1"; chr21 rmsk exon 39711178 39711536 3044 - . gene_id "ERV316A3_21q22.2c"; transcript_id "ERV316A3_21q22.2c"; locus "ERV316A3_21q22.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2714"; repClass "LTR"; repEnd "5146"; repFamily "ERVL"; repLeft "4792"; repStart "-80"; chr21 rmsk exon 39711829 39714462 3044 - . gene_id "ERV316A3_21q22.2c"; transcript_id "ERV316A3_21q22.2c"; locus "ERV316A3_21q22.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2714"; repClass "LTR"; repEnd "4791"; repFamily "ERVL"; repLeft "2120"; repStart "-435"; chr21 rmsk exon 39714901 39715002 2004 - . gene_id "ERV316A3_21q22.2c"; transcript_id "ERV316A3_21q22.2c"; locus "ERV316A3_21q22.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2714"; repClass "LTR"; repEnd "2388"; repFamily "ERVL"; repLeft "2286"; repStart "-2838"; ### ERVLE_21q22.2 ### chr21 rmsk gene 39726327 39727626 . + . gene_id "ERVLE_21q22.2"; transcript_id "ERVLE_21q22.2"; locus "ERVLE_21q22.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3553"; model_cov "1387"; model_pct "24.5"; chr21 rmsk exon 39726327 39726450 314 + . gene_id "ERVLE_21q22.2"; transcript_id "ERVLE_21q22.2"; locus "ERVLE_21q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3553"; repClass "LTR"; repEnd "4241"; repFamily "ERVL"; repLeft "-1426"; repStart "4114"; chr21 rmsk exon 39726473 39727626 1459 + . gene_id "ERVLE_21q22.2"; transcript_id "ERVLE_21q22.2"; locus "ERVLE_21q22.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3553"; repClass "LTR"; repEnd "5120"; repFamily "ERVL"; repLeft "-547"; repStart "3860"; ### HERVW_21q22.2 ### chr21 rmsk gene 39739264 39746425 . - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0302"; model_cov "6193"; model_pct "71.8"; chr21 rmsk exon 39739264 39739594 2497 - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0302"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chr21 rmsk exon 39739595 39739892 2380 - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0302"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8329"; repStart "0"; chr21 rmsk exon 39739903 39745101 44142 - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0302"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "822"; repStart "-2610"; chr21 rmsk exon 39745203 39745907 5765 - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0302"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "1"; repStart "-7923"; chr21 rmsk exon 39745908 39746425 3896 - . gene_id "HERVW_21q22.2"; transcript_id "HERVW_21q22.2"; locus "HERVW_21q22.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0302"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "257"; repStart "0"; ### ERVLB4_21q22.2 ### chr21 rmsk gene 40915182 40922247 . + . gene_id "ERVLB4_21q22.2"; transcript_id "ERVLB4_21q22.2"; locus "ERVLB4_21q22.2"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1740"; model_cov "3767"; model_pct "65.9"; chr21 rmsk exon 40915182 40915706 2021 + . gene_id "ERVLB4_21q22.2"; transcript_id "ERVLB4_21q22.2"; locus "ERVLB4_21q22.2"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1740"; repClass "LTR"; repEnd "525"; repFamily "ERVL"; repLeft "-29"; repStart "1"; chr21 rmsk exon 40915746 40915785 263 + . gene_id "ERVLB4_21q22.2"; transcript_id "ERVLB4_21q22.2"; locus "ERVLB4_21q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1740"; repClass "LTR"; repEnd "40"; repFamily "ERVL"; repLeft "-5674"; repStart "1"; chr21 rmsk exon 40917868 40921536 21355 + . gene_id "ERVLB4_21q22.2"; transcript_id "ERVLB4_21q22.2"; locus "ERVLB4_21q22.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1740"; repClass "LTR"; repEnd "3756"; repFamily "ERVL"; repLeft "-1958"; repStart "28"; chr21 rmsk exon 40922128 40922247 1712 + . gene_id "ERVLB4_21q22.2"; transcript_id "ERVLB4_21q22.2"; locus "ERVLB4_21q22.2"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1740"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "-318"; repStart "2"; ### HERVH_21q22.2 ### chr21 rmsk gene 40954769 40960696 . + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1208"; model_cov "5051"; model_pct "65.5"; chr21 rmsk exon 40954769 40955218 3346 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr21 rmsk exon 40955221 40958494 18408 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chr21 rmsk exon 40958494 40958989 3248 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr21 rmsk exon 40958992 40959652 4025 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr21 rmsk exon 40959654 40959869 1276 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr21 rmsk exon 40959870 40960246 2327 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr21 rmsk exon 40960247 40960696 3429 + . gene_id "HERVH_21q22.2"; transcript_id "HERVH_21q22.2"; locus "HERVH_21q22.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1208"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_21q22.2 ### chr21 rmsk gene 41189736 41194314 . - . gene_id "HERVL_21q22.2"; transcript_id "HERVL_21q22.2"; locus "HERVL_21q22.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1251"; model_cov "4143"; model_pct "73.3"; chr21 rmsk exon 41189736 41190196 3144 - . gene_id "HERVL_21q22.2"; transcript_id "HERVL_21q22.2"; locus "HERVL_21q22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1251"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chr21 rmsk exon 41190197 41194314 32614 - . gene_id "HERVL_21q22.2"; transcript_id "HERVL_21q22.2"; locus "HERVL_21q22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1251"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1511"; repStart "0"; ### ERVLB4_21q22.3a ### chr21 rmsk gene 41510454 41516597 . - . gene_id "ERVLB4_21q22.3a"; transcript_id "ERVLB4_21q22.3a"; locus "ERVLB4_21q22.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1741"; model_cov "4912"; model_pct "86.0"; chr21 rmsk exon 41510454 41510904 1990 - . gene_id "ERVLB4_21q22.3a"; transcript_id "ERVLB4_21q22.3a"; locus "ERVLB4_21q22.3a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1741"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "5"; repStart "-41"; chr21 rmsk exon 41511219 41512860 28654 - . gene_id "ERVLB4_21q22.3a"; transcript_id "ERVLB4_21q22.3a"; locus "ERVLB4_21q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1741"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4028"; repStart "0"; chr21 rmsk exon 41513108 41513138 28654 - . gene_id "ERVLB4_21q22.3a"; transcript_id "ERVLB4_21q22.3a"; locus "ERVLB4_21q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1741"; repClass "LTR"; repEnd "4027"; repFamily "ERVL"; repLeft "4012"; repStart "-1687"; chr21 rmsk exon 41513434 41516597 28654 - . gene_id "ERVLB4_21q22.3a"; transcript_id "ERVLB4_21q22.3a"; locus "ERVLB4_21q22.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1741"; repClass "LTR"; repEnd "4011"; repFamily "ERVL"; repLeft "800"; repStart "-1703"; ### ERV316A3_21q22.3a ### chr21 rmsk gene 41653581 41657285 . - . gene_id "ERV316A3_21q22.3a"; transcript_id "ERV316A3_21q22.3a"; locus "ERV316A3_21q22.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2715"; model_cov "1832"; model_pct "35.1"; chr21 rmsk exon 41653581 41654524 1798 - . gene_id "ERV316A3_21q22.3a"; transcript_id "ERV316A3_21q22.3a"; locus "ERV316A3_21q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2715"; repClass "LTR"; repEnd "2848"; repFamily "ERVL"; repLeft "1766"; repStart "-2378"; chr21 rmsk exon 41654887 41654917 270 - . gene_id "ERV316A3_21q22.3a"; transcript_id "ERV316A3_21q22.3a"; locus "ERV316A3_21q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2715"; repClass "LTR"; repEnd "2206"; repFamily "ERVL"; repLeft "2177"; repStart "-3020"; chr21 rmsk exon 41655997 41656462 758 - . gene_id "ERV316A3_21q22.3a"; transcript_id "ERV316A3_21q22.3a"; locus "ERV316A3_21q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2715"; repClass "LTR"; repEnd "1982"; repFamily "ERVL"; repLeft "1536"; repStart "-3244"; chr21 rmsk exon 41657014 41657285 589 - . gene_id "ERV316A3_21q22.3a"; transcript_id "ERV316A3_21q22.3a"; locus "ERV316A3_21q22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2715"; repClass "LTR"; repEnd "1790"; repFamily "ERVL"; repLeft "1515"; repStart "-3436"; ### ERV316A3_21q22.3b ### chr21 rmsk gene 42598743 42600906 . - . gene_id "ERV316A3_21q22.3b"; transcript_id "ERV316A3_21q22.3b"; locus "ERV316A3_21q22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2716"; model_cov "1409"; model_pct "27.0"; chr21 rmsk exon 42598743 42598856 278 - . gene_id "ERV316A3_21q22.3b"; transcript_id "ERV316A3_21q22.3b"; locus "ERV316A3_21q22.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2716"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "320"; repStart "-2"; chr21 rmsk exon 42598941 42599156 514 - . gene_id "ERV316A3_21q22.3b"; transcript_id "ERV316A3_21q22.3b"; locus "ERV316A3_21q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2716"; repClass "LTR"; repEnd "3834"; repFamily "ERVL"; repLeft "3607"; repStart "-1392"; chr21 rmsk exon 42599726 42600906 2443 - . gene_id "ERV316A3_21q22.3b"; transcript_id "ERV316A3_21q22.3b"; locus "ERV316A3_21q22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2716"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "2159"; repStart "-1885"; ### MER4B_21q22.3 ### chr21 rmsk gene 42600909 42605973 . - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0469"; model_cov "1529"; model_pct "22.6"; chr21 rmsk exon 42600909 42601001 427 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "4620"; repFamily "ERV1"; repLeft "4528"; repStart "-2138"; chr21 rmsk exon 42602021 42602334 1585 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "4530"; repFamily "ERV1"; repLeft "4228"; repStart "-2228"; chr21 rmsk exon 42602634 42602672 1585 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "4227"; repFamily "ERV1"; repLeft "4195"; repStart "-2531"; chr21 rmsk exon 42602677 42603420 5446 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "744"; repFamily "ERV1"; repLeft "2"; repStart "-22"; chr21 rmsk exon 42603422 42603494 331 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "4202"; repFamily "ERV1"; repLeft "4125"; repStart "-2556"; chr21 rmsk exon 42603989 42604571 3099 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "3891"; repFamily "ERV1"; repLeft "3324"; repStart "-2867"; chr21 rmsk exon 42604658 42604876 727 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "2927"; repFamily "ERV1"; repLeft "2689"; repStart "-3831"; chr21 rmsk exon 42605761 42605973 617 - . gene_id "MER4B_21q22.3"; transcript_id "MER4B_21q22.3"; locus "MER4B_21q22.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0469"; repClass "LTR"; repEnd "2141"; repFamily "ERV1"; repLeft "1920"; repStart "-4617"; ### ERVLE_21q22.3a ### chr21 rmsk gene 42630635 42632988 . - . gene_id "ERVLE_21q22.3a"; transcript_id "ERVLE_21q22.3a"; locus "ERVLE_21q22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3554"; model_cov "841"; model_pct "14.8"; chr21 rmsk exon 42630635 42630941 430 - . gene_id "ERVLE_21q22.3a"; transcript_id "ERVLE_21q22.3a"; locus "ERVLE_21q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3554"; repClass "LTR"; repEnd "4454"; repFamily "ERVL"; repLeft "4132"; repStart "-1213"; chr21 rmsk exon 42631173 42631534 842 - . gene_id "ERVLE_21q22.3a"; transcript_id "ERVLE_21q22.3a"; locus "ERVLE_21q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3554"; repClass "LTR"; repEnd "2510"; repFamily "ERVL"; repLeft "2156"; repStart "-3157"; chr21 rmsk exon 42632837 42632988 307 - . gene_id "ERVLE_21q22.3a"; transcript_id "ERVLE_21q22.3a"; locus "ERVLE_21q22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3554"; repClass "LTR"; repEnd "689"; repFamily "ERVL"; repLeft "524"; repStart "-4978"; ### HERVH_21q22.3 ### chr21 rmsk gene 42800847 42806578 . - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1209"; model_cov "5101"; model_pct "66.1"; chr21 rmsk exon 42800847 42801294 3269 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr21 rmsk exon 42801295 42801671 2375 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr21 rmsk exon 42801672 42801876 1378 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5615"; repStart "-1894"; chr21 rmsk exon 42801912 42802520 2896 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr21 rmsk exon 42802523 42803376 5660 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr21 rmsk exon 42803356 42806129 14762 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr21 rmsk exon 42806132 42806578 3173 - . gene_id "HERVH_21q22.3"; transcript_id "HERVH_21q22.3"; locus "HERVH_21q22.3"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1209"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_21q22.3a ### chr21 rmsk gene 42812949 42815759 . - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0787"; model_cov "2411"; model_pct "36.5"; chr21 rmsk exon 42812949 42813166 2515 - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0787"; repClass "LTR"; repEnd "231"; repFamily "ERV1"; repLeft "1"; repStart "-241"; chr21 rmsk exon 42813168 42813609 2704 - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0787"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "6143"; repStart "0"; chr21 rmsk exon 42813624 42814377 8796 - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0787"; repClass "LTR"; repEnd "5413"; repFamily "ERV1"; repLeft "4626"; repStart "-1185"; chr21 rmsk exon 42814674 42815363 8796 - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0787"; repClass "LTR"; repEnd "4625"; repFamily "ERV1"; repLeft "3916"; repStart "-1973"; chr21 rmsk exon 42815350 42815759 1522 - . gene_id "MER4_21q22.3a"; transcript_id "MER4_21q22.3a"; locus "MER4_21q22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0787"; repClass "LTR"; repEnd "3331"; repFamily "ERV1"; repLeft "2871"; repStart "-3267"; ### HERVH48_21q22.3 ### chr21 rmsk gene 42916742 42925876 . - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0052"; model_cov "7643"; model_pct "100.0"; chr21 rmsk exon 42916742 42917113 2579 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr21 rmsk exon 42917114 42918026 5697 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "6425"; repFamily "ERV1"; repLeft "4601"; repStart "-229"; chr21 rmsk exon 42919108 42922458 34842 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "5823"; repFamily "ERV1"; repLeft "2508"; repStart "-831"; chr21 rmsk exon 42922766 42924948 34842 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "2507"; repFamily "ERV1"; repLeft "256"; repStart "-4147"; chr21 rmsk exon 42925245 42925502 34842 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "2"; repStart "-6399"; chr21 rmsk exon 42925507 42925876 2474 - . gene_id "HERVH48_21q22.3"; transcript_id "HERVH48_21q22.3"; locus "HERVH48_21q22.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0052"; repClass "LTR"; repEnd "404"; repFamily "ERV1"; repLeft "1"; repStart "-3"; ### HARLEQUIN_21q22.3a ### chr21 rmsk gene 42931964 42937545 . + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0176"; model_cov "3556"; model_pct "51.6"; chr21 rmsk exon 42931964 42932430 2668 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 42932808 42933394 4395 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "849"; repFamily "ERV1"; repLeft "-6047"; repStart "263"; chr21 rmsk exon 42933380 42933699 2305 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "1347"; repFamily "ERV1"; repLeft "-5549"; repStart "1036"; chr21 rmsk exon 42933692 42935701 13067 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "6274"; repFamily "ERV1"; repLeft "-622"; repStart "4247"; chr21 rmsk exon 42935862 42936444 3942 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "6828"; repFamily "ERV1"; repLeft "-68"; repStart "6263"; chr21 rmsk exon 42937001 42937075 3942 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6829"; chr21 rmsk exon 42937076 42937545 2808 + . gene_id "HARLEQUIN_21q22.3a"; transcript_id "HARLEQUIN_21q22.3a"; locus "HARLEQUIN_21q22.3a"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0176"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HARLEQUIN_21q22.3b ### chr21 rmsk gene 42943457 42949462 . - . gene_id "HARLEQUIN_21q22.3b"; transcript_id "HARLEQUIN_21q22.3b"; locus "HARLEQUIN_21q22.3b"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0177"; model_cov "6005"; model_pct "87.1"; chr21 rmsk exon 42943457 42948313 36049 - . gene_id "HARLEQUIN_21q22.3b"; transcript_id "HARLEQUIN_21q22.3b"; locus "HARLEQUIN_21q22.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0177"; repClass "LTR"; repEnd "6653"; repFamily "ERV1"; repLeft "1807"; repStart "-243"; chr21 rmsk exon 42948301 42949462 8237 - . gene_id "HARLEQUIN_21q22.3b"; transcript_id "HARLEQUIN_21q22.3b"; locus "HARLEQUIN_21q22.3b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0177"; repClass "LTR"; repEnd "1422"; repFamily "ERV1"; repLeft "263"; repStart "-5474"; ### HERVFRD_21q22.3 ### chr21 rmsk gene 44475207 44477031 . + . gene_id "HERVFRD_21q22.3"; transcript_id "HERVFRD_21q22.3"; locus "HERVFRD_21q22.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0184"; model_cov "878"; model_pct "12.2"; chr21 rmsk exon 44475207 44475796 3440 + . gene_id "HERVFRD_21q22.3"; transcript_id "HERVFRD_21q22.3"; locus "HERVFRD_21q22.3"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0184"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "122"; chr21 rmsk exon 44475814 44475875 418 + . gene_id "HERVFRD_21q22.3"; transcript_id "HERVFRD_21q22.3"; locus "HERVFRD_21q22.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0184"; repClass "LTR"; repEnd "64"; repFamily "ERV1"; repLeft "-7141"; repStart "1"; chr21 rmsk exon 44475873 44476116 5095 + . gene_id "HERVFRD_21q22.3"; transcript_id "HERVFRD_21q22.3"; locus "HERVFRD_21q22.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0184"; repClass "LTR"; repEnd "1242"; repFamily "ERV1"; repLeft "-5963"; repStart "1005"; chr21 rmsk exon 44476461 44477031 5095 + . gene_id "HERVFRD_21q22.3"; transcript_id "HERVFRD_21q22.3"; locus "HERVFRD_21q22.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0184"; repClass "LTR"; repEnd "1821"; repFamily "ERV1"; repLeft "-5384"; repStart "1243"; ### HUERSP2_21q22.3 ### chr21 rmsk gene 44485340 44491111 . + . gene_id "HUERSP2_21q22.3"; transcript_id "HUERSP2_21q22.3"; locus "HUERSP2_21q22.3"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0122"; model_cov "2856"; model_pct "92.5"; chr21 rmsk exon 44485340 44486157 4857 + . gene_id "HUERSP2_21q22.3"; transcript_id "HUERSP2_21q22.3"; locus "HUERSP2_21q22.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0122"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 44486257 44486763 2935 + . gene_id "HUERSP2_21q22.3"; transcript_id "HUERSP2_21q22.3"; locus "HUERSP2_21q22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0122"; repClass "LTR"; repEnd "758"; repFamily "ERV1"; repLeft "-2330"; repStart "241"; chr21 rmsk exon 44487936 44490230 15851 + . gene_id "HUERSP2_21q22.3"; transcript_id "HUERSP2_21q22.3"; locus "HUERSP2_21q22.3"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0122"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "749"; chr21 rmsk exon 44490231 44491111 5043 + . gene_id "HUERSP2_21q22.3"; transcript_id "HUERSP2_21q22.3"; locus "HUERSP2_21q22.3"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0122"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_21q22.3 ### chr21 rmsk gene 44740294 44746215 . + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0372"; model_cov "4667"; model_pct "89.5"; chr21 rmsk exon 44740294 44740702 2667 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0372"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21 rmsk exon 44740703 44740849 693 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0372"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "-5070"; repStart "2"; chr21 rmsk exon 44740878 44741320 1661 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0372"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-4658"; repStart "154"; chr21 rmsk exon 44741938 44742834 3911 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0372"; repClass "LTR"; repEnd "1581"; repFamily "ERV1"; repLeft "-3636"; repStart "550"; chr21 rmsk exon 44742831 44745879 19577 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0372"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "2130"; chr21 rmsk exon 44745896 44746215 1816 + . gene_id "MER61_21q22.3"; transcript_id "MER61_21q22.3"; locus "MER61_21q22.3"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0372"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "-1"; repStart "85"; ### PRIMA4_21q22.3 ### chr21 rmsk gene 45260202 45261043 . + . gene_id "PRIMA4_21q22.3"; transcript_id "PRIMA4_21q22.3"; locus "PRIMA4_21q22.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0228"; model_cov "861"; model_pct "10.4"; chr21 rmsk exon 45260202 45261043 1884 + . gene_id "PRIMA4_21q22.3"; transcript_id "PRIMA4_21q22.3"; locus "PRIMA4_21q22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0228"; repClass "LTR"; repEnd "6257"; repFamily "ERV1"; repLeft "-2013"; repStart "5396"; ### ERVLE_21q22.3b ### chr21 rmsk gene 45630362 45633131 . - . gene_id "ERVLE_21q22.3b"; transcript_id "ERVLE_21q22.3b"; locus "ERVLE_21q22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3556"; model_cov "1443"; model_pct "25.5"; chr21 rmsk exon 45630362 45630868 384 - . gene_id "ERVLE_21q22.3b"; transcript_id "ERVLE_21q22.3b"; locus "ERVLE_21q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3556"; repClass "LTR"; repEnd "4898"; repFamily "ERVL"; repLeft "4387"; repStart "-769"; chr21 rmsk exon 45631831 45632039 342 - . gene_id "ERVLE_21q22.3b"; transcript_id "ERVLE_21q22.3b"; locus "ERVLE_21q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3556"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "4118"; repStart "-1338"; chr21 rmsk exon 45632432 45633131 1118 - . gene_id "ERVLE_21q22.3b"; transcript_id "ERVLE_21q22.3b"; locus "ERVLE_21q22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3556"; repClass "LTR"; repEnd "3354"; repFamily "ERVL"; repLeft "2633"; repStart "-2313"; ### ERV316A3_21q22.3c ### chr21 rmsk gene 46094126 46096937 . - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2719"; model_cov "2331"; model_pct "44.6"; chr21 rmsk exon 46094126 46094981 2928 - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2719"; repClass "LTR"; repEnd "3073"; repFamily "ERVL"; repLeft "2148"; repStart "-2153"; chr21 rmsk exon 46095034 46095517 1494 - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2719"; repClass "LTR"; repEnd "2057"; repFamily "ERVL"; repLeft "1580"; repStart "-3169"; chr21 rmsk exon 46095504 46096233 998 - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2719"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "599"; repStart "-3832"; chr21 rmsk exon 46096357 46096492 309 - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2719"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "295"; repStart "-4797"; chr21 rmsk exon 46096533 46096937 639 - . gene_id "ERV316A3_21q22.3c"; transcript_id "ERV316A3_21q22.3c"; locus "ERV316A3_21q22.3c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2719"; repClass "LTR"; repEnd "463"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### ERV316A3_21q22.3d ### chr21 rmsk gene 46447214 46447803 . - . gene_id "ERV316A3_21q22.3d"; transcript_id "ERV316A3_21q22.3d"; locus "ERV316A3_21q22.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2720"; model_cov "640"; model_pct "12.2"; chr21 rmsk exon 46447214 46447803 1414 - . gene_id "ERV316A3_21q22.3d"; transcript_id "ERV316A3_21q22.3d"; locus "ERV316A3_21q22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2720"; repClass "LTR"; repEnd "4602"; repFamily "ERVL"; repLeft "3962"; repStart "-624"; ### ERV316A3_21q22.3e ### chr21 rmsk gene 46451755 46458103 . - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2721"; model_cov "3865"; model_pct "74.0"; chr21 rmsk exon 46451755 46453743 6906 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "4309"; repFamily "ERVL"; repLeft "2328"; repStart "-917"; chr21 rmsk exon 46454036 46454775 6906 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "2327"; repFamily "ERVL"; repLeft "1589"; repStart "-2899"; chr21 rmsk exon 46454941 46455512 6906 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "1588"; repFamily "ERVL"; repLeft "1066"; repStart "-3638"; chr21 rmsk exon 46456087 46456265 567 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "1056"; repFamily "ERVL"; repLeft "842"; repStart "-4170"; chr21 rmsk exon 46456724 46456792 567 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "841"; repFamily "ERVL"; repLeft "773"; repStart "-4385"; chr21 rmsk exon 46456837 46456899 381 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "659"; repFamily "ERVL"; repLeft "599"; repStart "-4567"; chr21 rmsk exon 46457151 46457224 381 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "598"; repFamily "ERVL"; repLeft "523"; repStart "-4628"; chr21 rmsk exon 46457528 46457721 381 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "522"; repFamily "ERVL"; repLeft "315"; repStart "-4704"; chr21 rmsk exon 46457931 46458103 574 - . gene_id "ERV316A3_21q22.3e"; transcript_id "ERV316A3_21q22.3e"; locus "ERV316A3_21q22.3e"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2721"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "259"; repStart "0"; ### MER41_21q22.3a ### chr21 rmsk gene 46518871 46522910 . - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0543"; model_cov "4660"; model_pct "78.4"; chr21 rmsk exon 46518871 46519419 3898 - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0543"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "1"; repStart "-84"; chr21 rmsk exon 46519420 46519855 3263 - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0543"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5505"; repStart "0"; chr21 rmsk exon 46520174 46521180 8290 - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0543"; repClass "LTR"; repEnd "5504"; repFamily "ERV1"; repLeft "3806"; repStart "-442"; chr21 rmsk exon 46521489 46522861 8290 - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0543"; repClass "LTR"; repEnd "3352"; repFamily "ERV1"; repLeft "882"; repStart "-2594"; chr21 rmsk exon 46522863 46522910 287 - . gene_id "MER41_21q22.3a"; transcript_id "MER41_21q22.3a"; locus "MER41_21q22.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0543"; repClass "LTR"; repEnd "1480"; repFamily "ERV1"; repLeft "1429"; repStart "-4466"; ### MER41_21q22.3b ### chr21 rmsk gene 46523545 46524689 . - . gene_id "MER41_21q22.3b"; transcript_id "MER41_21q22.3b"; locus "MER41_21q22.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0544"; model_cov "1046"; model_pct "17.6"; chr21 rmsk exon 46523545 46523651 441 - . gene_id "MER41_21q22.3b"; transcript_id "MER41_21q22.3b"; locus "MER41_21q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0544"; repClass "LTR"; repEnd "1976"; repFamily "ERV1"; repLeft "1845"; repStart "-3970"; chr21 rmsk exon 46523628 46523845 1282 - . gene_id "MER41_21q22.3b"; transcript_id "MER41_21q22.3b"; locus "MER41_21q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0544"; repClass "LTR"; repEnd "1618"; repFamily "ERV1"; repLeft "1392"; repStart "-4328"; chr21 rmsk exon 46523847 46524532 4624 - . gene_id "MER41_21q22.3b"; transcript_id "MER41_21q22.3b"; locus "MER41_21q22.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0544"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chr21 rmsk exon 46524533 46524689 1081 - . gene_id "MER41_21q22.3b"; transcript_id "MER41_21q22.3b"; locus "MER41_21q22.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0544"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "478"; repStart "0"; ### ERVLB4_21q22.3b ### chr21 rmsk gene 46607219 46610032 . + . gene_id "ERVLB4_21q22.3b"; transcript_id "ERVLB4_21q22.3b"; locus "ERVLB4_21q22.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1742"; model_cov "2162"; model_pct "37.8"; chr21 rmsk exon 46607219 46607590 992 + . gene_id "ERVLB4_21q22.3b"; transcript_id "ERVLB4_21q22.3b"; locus "ERVLB4_21q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1742"; repClass "LTR"; repEnd "1871"; repFamily "ERVL"; repLeft "-3843"; repStart "1498"; chr21 rmsk exon 46607826 46608051 2078 + . gene_id "ERVLB4_21q22.3b"; transcript_id "ERVLB4_21q22.3b"; locus "ERVLB4_21q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1742"; repClass "LTR"; repEnd "2374"; repFamily "ERVL"; repLeft "-3340"; repStart "2136"; chr21 rmsk exon 46608603 46609198 2078 + . gene_id "ERVLB4_21q22.3b"; transcript_id "ERVLB4_21q22.3b"; locus "ERVLB4_21q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1742"; repClass "LTR"; repEnd "3025"; repFamily "ERVL"; repLeft "-2689"; repStart "2328"; chr21 rmsk exon 46609230 46610032 2801 + . gene_id "ERVLB4_21q22.3b"; transcript_id "ERVLB4_21q22.3b"; locus "ERVLB4_21q22.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1742"; repClass "LTR"; repEnd "3945"; repFamily "ERVL"; repLeft "-1769"; repStart "3091"; ### MER4_21q22.3b ### chr21 rmsk gene 46631793 46635087 . - . gene_id "MER4_21q22.3b"; transcript_id "MER4_21q22.3b"; locus "MER4_21q22.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0791"; model_cov "2404"; model_pct "36.4"; chr21 rmsk exon 46631793 46633152 10975 - . gene_id "MER4_21q22.3b"; transcript_id "MER4_21q22.3b"; locus "MER4_21q22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0791"; repClass "LTR"; repEnd "2406"; repFamily "ERV1"; repLeft "1034"; repStart "-4192"; chr21 rmsk exon 46633448 46634438 10975 - . gene_id "MER4_21q22.3b"; transcript_id "MER4_21q22.3b"; locus "MER4_21q22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0791"; repClass "LTR"; repEnd "1033"; repFamily "ERV1"; repLeft "1"; repStart "-5565"; chr21 rmsk exon 46634442 46634898 3167 - . gene_id "MER4_21q22.3b"; transcript_id "MER4_21q22.3b"; locus "MER4_21q22.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0791"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr21 rmsk exon 46634904 46635087 617 - . gene_id "MER4_21q22.3b"; transcript_id "MER4_21q22.3b"; locus "MER4_21q22.3b"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0791"; repClass "LTR"; repEnd "211"; repFamily "ERV1"; repLeft "9"; repStart "-399"; ### HERVL_22p11.2 ### chr22 rmsk gene 10680698 10684708 . - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1253"; model_cov "3317"; model_pct "58.7"; chr22 rmsk exon 10680698 10681081 2754 - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1253"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr22 rmsk exon 10681082 10683513 14148 - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1253"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3096"; repStart "0"; chr22 rmsk exon 10683507 10684004 3572 - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1253"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr22 rmsk exon 10683994 10684256 1815 - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1253"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr22 rmsk exon 10684257 10684708 2670 - . gene_id "HERVL_22p11.2"; transcript_id "HERVL_22p11.2"; locus "HERVL_22p11.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1253"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### PRIMA41_22p11.2a ### chr22 rmsk gene 11318917 11325349 . - . gene_id "PRIMA41_22p11.2a"; transcript_id "PRIMA41_22p11.2a"; locus "PRIMA41_22p11.2a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0161"; model_cov "4846"; model_pct "62.5"; chr22 rmsk exon 11318917 11320518 9171 - . gene_id "PRIMA41_22p11.2a"; transcript_id "PRIMA41_22p11.2a"; locus "PRIMA41_22p11.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0161"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4519"; repStart "-1593"; chr22 rmsk exon 11321167 11323907 9171 - . gene_id "PRIMA41_22p11.2a"; transcript_id "PRIMA41_22p11.2a"; locus "PRIMA41_22p11.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0161"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "1734"; repStart "-3238"; chr22 rmsk exon 11324868 11325109 2927 - . gene_id "PRIMA41_22p11.2a"; transcript_id "PRIMA41_22p11.2a"; locus "PRIMA41_22p11.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0161"; repClass "LTR"; repEnd "1733"; repFamily "ERV1"; repLeft "1492"; repStart "-6023"; chr22 rmsk exon 11325179 11325349 281 - . gene_id "PRIMA41_22p11.2a"; transcript_id "PRIMA41_22p11.2a"; locus "PRIMA41_22p11.2a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0161"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "1269"; repStart "-6310"; ### PRIMA41_22p11.2b ### chr22 rmsk gene 11555751 11561848 . + . gene_id "PRIMA41_22p11.2b"; transcript_id "PRIMA41_22p11.2b"; locus "PRIMA41_22p11.2b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0163"; model_cov "4578"; model_pct "59.0"; chr22 rmsk exon 11555751 11555907 1190 + . gene_id "PRIMA41_22p11.2b"; transcript_id "PRIMA41_22p11.2b"; locus "PRIMA41_22p11.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0163"; repClass "LTR"; repEnd "1727"; repFamily "ERV1"; repLeft "-6029"; repStart "1582"; chr22 rmsk exon 11556859 11559600 11845 + . gene_id "PRIMA41_22p11.2b"; transcript_id "PRIMA41_22p11.2b"; locus "PRIMA41_22p11.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0163"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "-3239"; repStart "1728"; chr22 rmsk exon 11560249 11561848 11845 + . gene_id "PRIMA41_22p11.2b"; transcript_id "PRIMA41_22p11.2b"; locus "PRIMA41_22p11.2b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0163"; repClass "LTR"; repEnd "6162"; repFamily "ERV1"; repLeft "-1594"; repStart "4518"; ### HML1_22p11.2a ### chr22 rmsk gene 11787878 11789938 . + . gene_id "HML1_22p11.2a"; transcript_id "HML1_22p11.2a"; locus "HML1_22p11.2a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0120"; model_cov "1887"; model_pct "31.0"; chr22 rmsk exon 11787878 11788161 2067 + . gene_id "HML1_22p11.2a"; transcript_id "HML1_22p11.2a"; locus "HML1_22p11.2a"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0120"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 11788162 11789938 13115 + . gene_id "HML1_22p11.2a"; transcript_id "HML1_22p11.2a"; locus "HML1_22p11.2a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0120"; repClass "LTR"; repEnd "1888"; repFamily "ERVK"; repLeft "-4208"; repStart "1"; ### HML3_22p11.2a ### chr22 rmsk gene 11789940 11793745 . + . gene_id "HML3_22p11.2a"; transcript_id "HML3_22p11.2a"; locus "HML3_22p11.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0234"; model_cov "3359"; model_pct "55.8"; chr22 rmsk exon 11789940 11790386 3579 + . gene_id "HML3_22p11.2a"; transcript_id "HML3_22p11.2a"; locus "HML3_22p11.2a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0234"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 11790387 11793192 22247 + . gene_id "HML3_22p11.2a"; transcript_id "HML3_22p11.2a"; locus "HML3_22p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0234"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr22 rmsk exon 11793193 11793422 1933 + . gene_id "HML3_22p11.2a"; transcript_id "HML3_22p11.2a"; locus "HML3_22p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0234"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr22 rmsk exon 11793411 11793745 2186 + . gene_id "HML3_22p11.2a"; transcript_id "HML3_22p11.2a"; locus "HML3_22p11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0234"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4583"; ### MER4_22p11.2 ### chr22 rmsk gene 11928496 11929483 . + . gene_id "MER4_22p11.2"; transcript_id "MER4_22p11.2"; locus "MER4_22p11.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0792"; model_cov "941"; model_pct "14.3"; chr22 rmsk exon 11928496 11929057 2406 + . gene_id "MER4_22p11.2"; transcript_id "MER4_22p11.2"; locus "MER4_22p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0792"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "-5946"; repStart "29"; chr22 rmsk exon 11929064 11929173 437 + . gene_id "MER4_22p11.2"; transcript_id "MER4_22p11.2"; locus "MER4_22p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0792"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-7235"; repStart "-723"; chr22 rmsk exon 11929276 11929483 647 + . gene_id "MER4_22p11.2"; transcript_id "MER4_22p11.2"; locus "MER4_22p11.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0792"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "-5501"; repStart "865"; ### HML1_22p11.2b ### chr22 rmsk gene 12071330 12073385 . + . gene_id "HML1_22p11.2b"; transcript_id "HML1_22p11.2b"; locus "HML1_22p11.2b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0121"; model_cov "1786"; model_pct "29.3"; chr22 rmsk exon 12071330 12071609 1886 + . gene_id "HML1_22p11.2b"; transcript_id "HML1_22p11.2b"; locus "HML1_22p11.2b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0121"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 12071610 12071710 593 + . gene_id "HML1_22p11.2b"; transcript_id "HML1_22p11.2b"; locus "HML1_22p11.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0121"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "-5994"; repStart "1"; chr22 rmsk exon 12071705 12073385 12151 + . gene_id "HML1_22p11.2b"; transcript_id "HML1_22p11.2b"; locus "HML1_22p11.2b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0121"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "204"; ### HML3_22p11.2b ### chr22 rmsk gene 12073386 12077190 . + . gene_id "HML3_22p11.2b"; transcript_id "HML3_22p11.2b"; locus "HML3_22p11.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0235"; model_cov "3347"; model_pct "55.6"; chr22 rmsk exon 12073386 12073836 3279 + . gene_id "HML3_22p11.2b"; transcript_id "HML3_22p11.2b"; locus "HML3_22p11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0235"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 12073837 12076634 20486 + . gene_id "HML3_22p11.2b"; transcript_id "HML3_22p11.2b"; locus "HML3_22p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0235"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr22 rmsk exon 12076635 12076864 1756 + . gene_id "HML3_22p11.2b"; transcript_id "HML3_22p11.2b"; locus "HML3_22p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0235"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr22 rmsk exon 12076866 12077190 2229 + . gene_id "HML3_22p11.2b"; transcript_id "HML3_22p11.2b"; locus "HML3_22p11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0235"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### HML3_22p11.2c ### chr22 rmsk gene 12198529 12202322 . - . gene_id "HML3_22p11.2c"; transcript_id "HML3_22p11.2c"; locus "HML3_22p11.2c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0236"; model_cov "3347"; model_pct "55.6"; chr22 rmsk exon 12198529 12198855 2337 - . gene_id "HML3_22p11.2c"; transcript_id "HML3_22p11.2c"; locus "HML3_22p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0236"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "4595"; repStart "-1105"; chr22 rmsk exon 12198857 12199086 1911 - . gene_id "HML3_22p11.2c"; transcript_id "HML3_22p11.2c"; locus "HML3_22p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0236"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr22 rmsk exon 12199087 12201874 21981 - . gene_id "HML3_22p11.2c"; transcript_id "HML3_22p11.2c"; locus "HML3_22p11.2c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0236"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr22 rmsk exon 12201875 12202322 3493 - . gene_id "HML3_22p11.2c"; transcript_id "HML3_22p11.2c"; locus "HML3_22p11.2c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0236"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_22p11.2c ### chr22 rmsk gene 12202323 12204378 . - . gene_id "HML1_22p11.2c"; transcript_id "HML1_22p11.2c"; locus "HML1_22p11.2c"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0122"; model_cov "1886"; model_pct "30.9"; chr22 rmsk exon 12202323 12204092 13141 - . gene_id "HML1_22p11.2c"; transcript_id "HML1_22p11.2c"; locus "HML1_22p11.2c"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0122"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "3"; repStart "-4207"; chr22 rmsk exon 12204095 12204378 2067 - . gene_id "HML1_22p11.2c"; transcript_id "HML1_22p11.2c"; locus "HML1_22p11.2c"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0122"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERV316A3_22q11.1a ### chr22 rmsk gene 15231211 15232429 . - . gene_id "ERV316A3_22q11.1a"; transcript_id "ERV316A3_22q11.1a"; locus "ERV316A3_22q11.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2722"; model_cov "571"; model_pct "10.9"; chr22 rmsk exon 15231211 15231416 734 - . gene_id "ERV316A3_22q11.1a"; transcript_id "ERV316A3_22q11.1a"; locus "ERV316A3_22q11.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2722"; repClass "LTR"; repEnd "383"; repFamily "ERVL"; repLeft "173"; repStart "-80"; chr22 rmsk exon 15231621 15231750 458 - . gene_id "ERV316A3_22q11.1a"; transcript_id "ERV316A3_22q11.1a"; locus "ERV316A3_22q11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2722"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "5069"; repStart "-28"; chr22 rmsk exon 15232021 15232429 2388 - . gene_id "ERV316A3_22q11.1a"; transcript_id "ERV316A3_22q11.1a"; locus "ERV316A3_22q11.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2722"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "4188"; repStart "-596"; ### ERV316A3_22q11.1b ### chr22 rmsk gene 15232483 15233690 . - . gene_id "ERV316A3_22q11.1b"; transcript_id "ERV316A3_22q11.1b"; locus "ERV316A3_22q11.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2723"; model_cov "1312"; model_pct "25.1"; chr22 rmsk exon 15232483 15233690 2388 - . gene_id "ERV316A3_22q11.1b"; transcript_id "ERV316A3_22q11.1b"; locus "ERV316A3_22q11.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2723"; repClass "LTR"; repEnd "4630"; repFamily "ERVL"; repLeft "3318"; repStart "-596"; ### HERVI_22q11.1a ### chr22 rmsk gene 15278120 15280559 . + . gene_id "HERVI_22q11.1a"; transcript_id "HERVI_22q11.1a"; locus "HERVI_22q11.1a"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0037"; model_cov "1976"; model_pct "25.4"; chr22 rmsk exon 15278120 15278633 2408 + . gene_id "HERVI_22q11.1a"; transcript_id "HERVI_22q11.1a"; locus "HERVI_22q11.1a"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0037"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "3"; chr22 rmsk exon 15278649 15278981 1149 + . gene_id "HERVI_22q11.1a"; transcript_id "HERVI_22q11.1a"; locus "HERVI_22q11.1a"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0037"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-7468"; repStart "1"; chr22 rmsk exon 15278993 15280559 7940 + . gene_id "HERVI_22q11.1a"; transcript_id "HERVI_22q11.1a"; locus "HERVI_22q11.1a"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0037"; repClass "LTR"; repEnd "1948"; repFamily "ERV1"; repLeft "-5837"; repStart "288"; ### HERVIP10F_22q11.1 ### chr22 rmsk gene 15284876 15290702 . + . gene_id "HERVIP10F_22q11.1"; transcript_id "HERVIP10F_22q11.1"; locus "HERVIP10F_22q11.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0121"; model_cov "5257"; model_pct "67.9"; chr22 rmsk exon 15284876 15288198 22668 + . gene_id "HERVIP10F_22q11.1"; transcript_id "HERVIP10F_22q11.1"; locus "HERVIP10F_22q11.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0121"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "-2635"; repStart "1771"; chr22 rmsk exon 15288191 15290106 12036 + . gene_id "HERVIP10F_22q11.1"; transcript_id "HERVIP10F_22q11.1"; locus "HERVIP10F_22q11.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0121"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "-7"; repStart "5804"; chr22 rmsk exon 15290111 15290161 227 + . gene_id "HERVIP10F_22q11.1"; transcript_id "HERVIP10F_22q11.1"; locus "HERVIP10F_22q11.1"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0121"; repClass "LTR"; repEnd "51"; repFamily "ERV1"; repLeft "-496"; repStart "1"; chr22 rmsk exon 15290184 15290702 2572 + . gene_id "HERVIP10F_22q11.1"; transcript_id "HERVIP10F_22q11.1"; locus "HERVIP10F_22q11.1"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0121"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### MER101_22q11.1a ### chr22 rmsk gene 15546610 15547503 . - . gene_id "MER101_22q11.1a"; transcript_id "MER101_22q11.1a"; locus "MER101_22q11.1a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0413"; model_cov "824"; model_pct "12.4"; chr22 rmsk exon 15546610 15547151 2072 - . gene_id "MER101_22q11.1a"; transcript_id "MER101_22q11.1a"; locus "MER101_22q11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0413"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "3055"; repStart "-3060"; chr22 rmsk exon 15547187 15547503 2072 - . gene_id "MER101_22q11.1a"; transcript_id "MER101_22q11.1a"; locus "MER101_22q11.1a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0413"; repClass "LTR"; repEnd "3054"; repFamily "ERV1"; repLeft "2754"; repStart "-3585"; ### MER41_22q11.1 ### chr22 rmsk gene 15647029 15647709 . + . gene_id "MER41_22q11.1"; transcript_id "MER41_22q11.1"; locus "MER41_22q11.1"; category "internal"; intModel "MER41-int"; locid "MER41-int_0545"; model_cov "687"; model_pct "11.6"; chr22 rmsk exon 15647029 15647264 945 + . gene_id "MER41_22q11.1"; transcript_id "MER41_22q11.1"; locus "MER41_22q11.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0545"; repClass "LTR"; repEnd "-124"; repFamily "ERV1"; repLeft "-6070"; repStart "-335"; chr22 rmsk exon 15647256 15647709 2297 + . gene_id "MER41_22q11.1"; transcript_id "MER41_22q11.1"; locus "MER41_22q11.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0545"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "-2725"; repStart "2745"; ### MER4_22q11.1a ### chr22 rmsk gene 15657533 15664081 . + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0793"; model_cov "6837"; model_pct "100.0"; chr22 rmsk exon 15657533 15657991 3004 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0793"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chr22 rmsk exon 15657998 15658563 2600 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0793"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "-5989"; repStart "1"; chr22 rmsk exon 15658542 15659125 3761 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0793"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "-4588"; repStart "1005"; chr22 rmsk exon 15659831 15660285 3761 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0793"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "-4099"; repStart "2011"; chr22 rmsk exon 15660513 15663647 14667 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0793"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "1862"; chr22 rmsk exon 15663649 15664081 2979 + . gene_id "MER4_22q11.1a"; transcript_id "MER4_22q11.1a"; locus "MER4_22q11.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0793"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### MER4_22q11.1b ### chr22 rmsk gene 15726092 15727202 . + . gene_id "MER4_22q11.1b"; transcript_id "MER4_22q11.1b"; locus "MER4_22q11.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0794"; model_cov "904"; model_pct "13.7"; chr22 rmsk exon 15726092 15726640 2541 + . gene_id "MER4_22q11.1b"; transcript_id "MER4_22q11.1b"; locus "MER4_22q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0794"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "-5943"; repStart "29"; chr22 rmsk exon 15726645 15726747 465 + . gene_id "MER4_22q11.1b"; transcript_id "MER4_22q11.1b"; locus "MER4_22q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0794"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-723"; chr22 rmsk exon 15727026 15727202 598 + . gene_id "MER4_22q11.1b"; transcript_id "MER4_22q11.1b"; locus "MER4_22q11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0794"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "-5501"; repStart "909"; ### MER4B_22q11.1 ### chr22 rmsk gene 15926600 15931090 . + . gene_id "MER4B_22q11.1"; transcript_id "MER4B_22q11.1"; locus "MER4B_22q11.1"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0472"; model_cov "2245"; model_pct "33.2"; chr22 rmsk exon 15926600 15927129 1745 + . gene_id "MER4B_22q11.1"; transcript_id "MER4B_22q11.1"; locus "MER4B_22q11.1"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0472"; repClass "LTR"; repEnd "487"; repFamily "ERV1"; repLeft "-294"; repStart "1"; chr22 rmsk exon 15927131 15927802 2085 + . gene_id "MER4B_22q11.1"; transcript_id "MER4B_22q11.1"; locus "MER4B_22q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0472"; repClass "LTR"; repEnd "409"; repFamily "ERV1"; repLeft "-6349"; repStart "-443"; chr22 rmsk exon 15929755 15931090 1475 + . gene_id "MER4B_22q11.1"; transcript_id "MER4B_22q11.1"; locus "MER4B_22q11.1"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0472"; repClass "LTR"; repEnd "2758"; repFamily "ERV1"; repLeft "-4000"; repStart "1365"; ### PRIMA4_22q11.1 ### chr22 rmsk gene 15935965 15937961 . - . gene_id "PRIMA4_22q11.1"; transcript_id "PRIMA4_22q11.1"; locus "PRIMA4_22q11.1"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0230"; model_cov "2002"; model_pct "24.2"; chr22 rmsk exon 15935965 15937961 3512 - . gene_id "PRIMA4_22q11.1"; transcript_id "PRIMA4_22q11.1"; locus "PRIMA4_22q11.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0230"; repClass "LTR"; repEnd "6237"; repFamily "ERV1"; repLeft "4235"; repStart "-2033"; ### ERV316A3_22q11.1c ### chr22 rmsk gene 16099521 16100763 . - . gene_id "ERV316A3_22q11.1c"; transcript_id "ERV316A3_22q11.1c"; locus "ERV316A3_22q11.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2724"; model_cov "696"; model_pct "13.3"; chr22 rmsk exon 16099521 16099770 738 - . gene_id "ERV316A3_22q11.1c"; transcript_id "ERV316A3_22q11.1c"; locus "ERV316A3_22q11.1c"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2724"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "175"; repStart "-7"; chr22 rmsk exon 16099981 16100106 347 - . gene_id "ERV316A3_22q11.1c"; transcript_id "ERV316A3_22q11.1c"; locus "ERV316A3_22q11.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2724"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "5069"; repStart "-31"; chr22 rmsk exon 16100218 16100763 2515 - . gene_id "ERV316A3_22q11.1c"; transcript_id "ERV316A3_22q11.1c"; locus "ERV316A3_22q11.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2724"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "4247"; repStart "-409"; ### ERV316A3_22q11.1d ### chr22 rmsk gene 16100817 16102026 . - . gene_id "ERV316A3_22q11.1d"; transcript_id "ERV316A3_22q11.1d"; locus "ERV316A3_22q11.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2725"; model_cov "1266"; model_pct "24.2"; chr22 rmsk exon 16100817 16102026 2515 - . gene_id "ERV316A3_22q11.1d"; transcript_id "ERV316A3_22q11.1d"; locus "ERV316A3_22q11.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2725"; repClass "LTR"; repEnd "4817"; repFamily "ERVL"; repLeft "3551"; repStart "-409"; ### HERVI_22q11.1b ### chr22 rmsk gene 16146029 16154515 . + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0038"; model_cov "7105"; model_pct "91.3"; chr22 rmsk exon 16146029 16146542 2399 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "3"; chr22 rmsk exon 16146558 16146890 1140 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "-7468"; repStart "1"; chr22 rmsk exon 16146998 16148386 24371 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "1941"; repFamily "ERV1"; repLeft "-5844"; repStart "346"; chr22 rmsk exon 16148686 16152001 24371 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-2575"; repStart "1942"; chr22 rmsk exon 16151998 16153919 11986 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "7778"; repFamily "ERV1"; repLeft "-7"; repStart "5852"; chr22 rmsk exon 16153997 16154515 2593 + . gene_id "HERVI_22q11.1b"; transcript_id "HERVI_22q11.1b"; locus "HERVI_22q11.1b"; repName "LTR10A"; geneRegion "ltr"; locid "HERVI-int_0038"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-62"; repStart "1"; ### ERV316A3_22q11.1e ### chr22 rmsk gene 16415042 16416022 . + . gene_id "ERV316A3_22q11.1e"; transcript_id "ERV316A3_22q11.1e"; locus "ERV316A3_22q11.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2726"; model_cov "707"; model_pct "13.5"; chr22 rmsk exon 16415042 16415521 917 + . gene_id "ERV316A3_22q11.1e"; transcript_id "ERV316A3_22q11.1e"; locus "ERV316A3_22q11.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2726"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2389"; chr22 rmsk exon 16415889 16416022 872 + . gene_id "ERV316A3_22q11.1e"; transcript_id "ERV316A3_22q11.1e"; locus "ERV316A3_22q11.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2726"; repClass "LTR"; repEnd "3097"; repFamily "ERVL"; repLeft "-2129"; repStart "2963"; ### ERV316A3_22q11.1f ### chr22 rmsk gene 16418913 16420478 . + . gene_id "ERV316A3_22q11.1f"; transcript_id "ERV316A3_22q11.1f"; locus "ERV316A3_22q11.1f"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2727"; model_cov "1300"; model_pct "24.9"; chr22 rmsk exon 16418913 16419937 2658 + . gene_id "ERV316A3_22q11.1f"; transcript_id "ERV316A3_22q11.1f"; locus "ERV316A3_22q11.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2727"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "-632"; repStart "3553"; chr22 rmsk exon 16420070 16420335 427 + . gene_id "ERV316A3_22q11.1f"; transcript_id "ERV316A3_22q11.1f"; locus "ERV316A3_22q11.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2727"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4967"; chr22 rmsk exon 16420339 16420478 356 + . gene_id "ERV316A3_22q11.1f"; transcript_id "ERV316A3_22q11.1f"; locus "ERV316A3_22q11.1f"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2727"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-294"; repStart "2"; ### ERVLB4_22q11.1a ### chr22 rmsk gene 16550468 16551586 . + . gene_id "ERVLB4_22q11.1a"; transcript_id "ERVLB4_22q11.1a"; locus "ERVLB4_22q11.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1744"; model_cov "1019"; model_pct "17.8"; chr22 rmsk exon 16550468 16550659 1008 + . gene_id "ERVLB4_22q11.1a"; transcript_id "ERVLB4_22q11.1a"; locus "ERVLB4_22q11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1744"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr22 rmsk exon 16550780 16551586 3519 + . gene_id "ERVLB4_22q11.1a"; transcript_id "ERVLB4_22q11.1a"; locus "ERVLB4_22q11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1744"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### HERVH_22q11.1 ### chr22 rmsk gene 16611308 16615149 . + . gene_id "HERVH_22q11.1"; transcript_id "HERVH_22q11.1"; locus "HERVH_22q11.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1210"; model_cov "2483"; model_pct "32.2"; chr22 rmsk exon 16611308 16611747 3664 + . gene_id "HERVH_22q11.1"; transcript_id "HERVH_22q11.1"; locus "HERVH_22q11.1"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1210"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 16611748 16614708 4925 + . gene_id "HERVH_22q11.1"; transcript_id "HERVH_22q11.1"; locus "HERVH_22q11.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1210"; repClass "LTR"; repEnd "2484"; repFamily "ERV1"; repLeft "-5229"; repStart "1"; chr22 rmsk exon 16614709 16615149 3687 + . gene_id "HERVH_22q11.1"; transcript_id "HERVH_22q11.1"; locus "HERVH_22q11.1"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1210"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_22q11.1 ### chr22 rmsk gene 16848825 16850281 . + . gene_id "LTR57_22q11.1"; transcript_id "LTR57_22q11.1"; locus "LTR57_22q11.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0184"; model_cov "1130"; model_pct "21.1"; chr22 rmsk exon 16848825 16849068 4142 + . gene_id "LTR57_22q11.1"; transcript_id "LTR57_22q11.1"; locus "LTR57_22q11.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0184"; repClass "LTR"; repEnd "1169"; repFamily "ERVL"; repLeft "-4174"; repStart "449"; chr22 rmsk exon 16849868 16850281 4142 + . gene_id "LTR57_22q11.1"; transcript_id "LTR57_22q11.1"; locus "LTR57_22q11.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0184"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "-3763"; repStart "1170"; ### MER101_22q11.1b ### chr22 rmsk gene 16849069 16853072 . + . gene_id "MER101_22q11.1b"; transcript_id "MER101_22q11.1b"; locus "MER101_22q11.1b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0414"; model_cov "3292"; model_pct "49.6"; chr22 rmsk exon 16849069 16849568 4516 + . gene_id "MER101_22q11.1b"; transcript_id "MER101_22q11.1b"; locus "MER101_22q11.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0414"; repClass "LTR"; repEnd "-345"; repFamily "ERV1"; repLeft "-6984"; repStart "-803"; chr22 rmsk exon 16850282 16851511 4807 + . gene_id "MER101_22q11.1b"; transcript_id "MER101_22q11.1b"; locus "MER101_22q11.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0414"; repClass "LTR"; repEnd "3188"; repFamily "ERV1"; repLeft "-3451"; repStart "1137"; chr22 rmsk exon 16851930 16852719 4807 + . gene_id "MER101_22q11.1b"; transcript_id "MER101_22q11.1b"; locus "MER101_22q11.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0414"; repClass "LTR"; repEnd "3933"; repFamily "ERV1"; repLeft "-2706"; repStart "3189"; chr22 rmsk exon 16853040 16853072 516 + . gene_id "MER101_22q11.1b"; transcript_id "MER101_22q11.1b"; locus "MER101_22q11.1b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0414"; repClass "LTR"; repEnd "4918"; repFamily "ERV1"; repLeft "-1721"; repStart "4879"; ### HERVL_22q11.1a ### chr22 rmsk gene 16899227 16903241 . - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1254"; model_cov "3248"; model_pct "57.4"; chr22 rmsk exon 16899227 16899610 2858 - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1254"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr22 rmsk exon 16899611 16902046 14731 - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1254"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3165"; repStart "0"; chr22 rmsk exon 16902043 16902540 3546 - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1254"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr22 rmsk exon 16902530 16902792 1830 - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1254"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr22 rmsk exon 16902793 16903241 2876 - . gene_id "HERVL_22q11.1a"; transcript_id "HERVL_22q11.1a"; locus "HERVL_22q11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1254"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_22q11.1b ### chr22 rmsk gene 16935684 16941229 . - . gene_id "HERVL_22q11.1b"; transcript_id "HERVL_22q11.1b"; locus "HERVL_22q11.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1255"; model_cov "4632"; model_pct "81.9"; chr22 rmsk exon 16935684 16936065 2889 - . gene_id "HERVL_22q11.1b"; transcript_id "HERVL_22q11.1b"; locus "HERVL_22q11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1255"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr22 rmsk exon 16936066 16940357 29621 - . gene_id "HERVL_22q11.1b"; transcript_id "HERVL_22q11.1b"; locus "HERVL_22q11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1255"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1317"; repStart "0"; chr22 rmsk exon 16940332 16940635 1783 - . gene_id "HERVL_22q11.1b"; transcript_id "HERVL_22q11.1b"; locus "HERVL_22q11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1255"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-102"; repStart "-5461"; chr22 rmsk exon 16940857 16941229 2331 - . gene_id "HERVL_22q11.1b"; transcript_id "HERVL_22q11.1b"; locus "HERVL_22q11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1255"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "1"; repStart "-60"; ### ERVLB4_22q11.1b ### chr22 rmsk gene 17281404 17283901 . - . gene_id "ERVLB4_22q11.1b"; transcript_id "ERVLB4_22q11.1b"; locus "ERVLB4_22q11.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1745"; model_cov "862"; model_pct "15.1"; chr22 rmsk exon 17281404 17281804 655 - . gene_id "ERVLB4_22q11.1b"; transcript_id "ERVLB4_22q11.1b"; locus "ERVLB4_22q11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1745"; repClass "LTR"; repEnd "5086"; repFamily "ERVL"; repLeft "4647"; repStart "-628"; chr22 rmsk exon 17283494 17283901 1073 - . gene_id "ERVLB4_22q11.1b"; transcript_id "ERVLB4_22q11.1b"; locus "ERVLB4_22q11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1745"; repClass "LTR"; repEnd "4389"; repFamily "ERVL"; repLeft "3966"; repStart "-1325"; ### ERVL_22q11.21a ### chr22 rmsk gene 18209951 18210587 . - . gene_id "ERVL_22q11.21a"; transcript_id "ERVL_22q11.21a"; locus "ERVL_22q11.21a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0451"; model_cov "638"; model_pct "11.1"; chr22 rmsk exon 18209951 18210587 448 - . gene_id "ERVL_22q11.21a"; transcript_id "ERVL_22q11.21a"; locus "ERVL_22q11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0451"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "978"; repStart "-4141"; ### ERVL_22q11.21b ### chr22 rmsk gene 18414054 18414690 . + . gene_id "ERVL_22q11.21b"; transcript_id "ERVL_22q11.21b"; locus "ERVL_22q11.21b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0452"; model_cov "638"; model_pct "11.1"; chr22 rmsk exon 18414054 18414690 256 + . gene_id "ERVL_22q11.21b"; transcript_id "ERVL_22q11.21b"; locus "ERVL_22q11.21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0452"; repClass "LTR"; repEnd "1616"; repFamily "ERVL"; repLeft "-4141"; repStart "978"; ### HML2_22q11.21 ### chr22 rmsk gene 18938674 18947848 . + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0122"; model_cov "7154"; model_pct "94.9"; chr22 rmsk exon 18938674 18939641 9026 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 18939642 18945174 43432 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr22 rmsk exon 18945174 18946795 13254 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826"; chr22 rmsk exon 18946885 18947848 8954 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_22q11.21 ### chr22 rmsk gene 18948886 18950244 . - . gene_id "HML3_22q11.21"; transcript_id "HML3_22q11.21"; locus "HML3_22q11.21"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0237"; model_cov "868"; model_pct "14.4"; chr22 rmsk exon 18948886 18949065 1313 - . gene_id "HML3_22q11.21"; transcript_id "HML3_22q11.21"; locus "HML3_22q11.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0237"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "335"; repStart "0"; chr22 rmsk exon 18949360 18949377 1313 - . gene_id "HML3_22q11.21"; transcript_id "HML3_22q11.21"; locus "HML3_22q11.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0237"; repClass "LTR"; repEnd "334"; repFamily "ERVK"; repLeft "317"; repStart "-178"; chr22 rmsk exon 18949378 18950244 6439 - . gene_id "HML3_22q11.21"; transcript_id "HML3_22q11.21"; locus "HML3_22q11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0237"; repClass "LTR"; repEnd "5847"; repFamily "ERVK"; repLeft "4979"; repStart "-174"; ### ERV316A3_22q11.21 ### chr22 rmsk gene 19155020 19156619 . - . gene_id "ERV316A3_22q11.21"; transcript_id "ERV316A3_22q11.21"; locus "ERV316A3_22q11.21"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2728"; model_cov "555"; model_pct "10.6"; chr22 rmsk exon 19155020 19155185 296 - . gene_id "ERV316A3_22q11.21"; transcript_id "ERV316A3_22q11.21"; locus "ERV316A3_22q11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2728"; repClass "LTR"; repEnd "3410"; repFamily "ERVL"; repLeft "3228"; repStart "-1816"; chr22 rmsk exon 19156272 19156619 681 - . gene_id "ERV316A3_22q11.21"; transcript_id "ERV316A3_22q11.21"; locus "ERV316A3_22q11.21"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2728"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2712"; repStart "-2141"; ### PRIMAX_22q11.21 ### chr22 rmsk gene 19298641 19306571 . + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; category "oneside"; intModel "PRIMAX-int"; locid "PRIMAX-int_0034"; model_cov "4144"; model_pct "100.0"; chr22 rmsk exon 19298641 19299219 3255 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "LTR24C"; geneRegion "ltr"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 19299223 19299710 2512 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "-2999"; repFamily "ERV1"; repLeft "-7101"; repStart "-3507"; chr22 rmsk exon 19299895 19300485 3891 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "-2390"; repFamily "ERV1"; repLeft "-6492"; repStart "-2993"; chr22 rmsk exon 19300803 19300924 3891 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "-2279"; repFamily "ERV1"; repLeft "-6381"; repStart "-2389"; chr22 rmsk exon 19301247 19301391 6610 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "-1639"; repFamily "ERV1"; repLeft "-5741"; repStart "-1785"; chr22 rmsk exon 19301690 19302128 6924 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "976"; repFamily "ERV1"; repLeft "-3126"; repStart "742"; chr22 rmsk exon 19302429 19303065 6924 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "1610"; repFamily "ERV1"; repLeft "-2492"; repStart "977"; chr22 rmsk exon 19303386 19303599 6924 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "1787"; repFamily "ERV1"; repLeft "-2315"; repStart "1611"; chr22 rmsk exon 19303863 19304075 6924 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "1988"; repFamily "ERV1"; repLeft "-2114"; repStart "1788"; chr22 rmsk exon 19304715 19305134 9531 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "2386"; repFamily "ERV1"; repLeft "-1716"; repStart "1975"; chr22 rmsk exon 19305447 19306571 9531 + . gene_id "PRIMAX_22q11.21"; transcript_id "PRIMAX_22q11.21"; locus "PRIMAX_22q11.21"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0034"; repClass "LTR"; repEnd "3510"; repFamily "ERV1"; repLeft "-592"; repStart "2387"; ### LTR57_22q11.21 ### chr22 rmsk gene 19501517 19502904 . - . gene_id "LTR57_22q11.21"; transcript_id "LTR57_22q11.21"; locus "LTR57_22q11.21"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0185"; model_cov "1108"; model_pct "20.7"; chr22 rmsk exon 19501517 19501719 5276 - . gene_id "LTR57_22q11.21"; transcript_id "LTR57_22q11.21"; locus "LTR57_22q11.21"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0185"; repClass "LTR"; repEnd "1593"; repFamily "ERVL"; repLeft "1377"; repStart "-3750"; chr22 rmsk exon 19502017 19502904 5276 - . gene_id "LTR57_22q11.21"; transcript_id "LTR57_22q11.21"; locus "LTR57_22q11.21"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0185"; repClass "LTR"; repEnd "1376"; repFamily "ERVL"; repLeft "484"; repStart "-3967"; ### ERVLB4_22q11.21a ### chr22 rmsk gene 19787055 19787825 . - . gene_id "ERVLB4_22q11.21a"; transcript_id "ERVLB4_22q11.21a"; locus "ERVLB4_22q11.21a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1746"; model_cov "757"; model_pct "13.2"; chr22 rmsk exon 19787055 19787659 1132 - . gene_id "ERVLB4_22q11.21a"; transcript_id "ERVLB4_22q11.21a"; locus "ERVLB4_22q11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1746"; repClass "LTR"; repEnd "1419"; repFamily "ERVL"; repLeft "772"; repStart "-4295"; chr22 rmsk exon 19787717 19787825 331 - . gene_id "ERVLB4_22q11.21a"; transcript_id "ERVLB4_22q11.21a"; locus "ERVLB4_22q11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1746"; repClass "LTR"; repEnd "602"; repFamily "ERVL"; repLeft "492"; repStart "-5112"; ### HERVK11_22q11.21 ### chr22 rmsk gene 19934438 19940687 . + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0104"; model_cov "4585"; model_pct "57.7"; chr22 rmsk exon 19934438 19934551 3109 + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0104"; repClass "LTR"; repEnd "211"; repFamily "ERVK"; repLeft "-1055"; repStart "1"; chr22 rmsk exon 19934860 19935775 4625 + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0104"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "0"; repStart "109"; chr22 rmsk exon 19935776 19938863 21899 + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0104"; repClass "LTR"; repEnd "3067"; repFamily "ERVK"; repLeft "-4886"; repStart "1"; chr22 rmsk exon 19938864 19939961 10894 + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0104"; repClass "LTR"; repEnd "6441"; repFamily "ERVK"; repLeft "-1512"; repStart "5331"; chr22 rmsk exon 19940278 19940687 10894 + . gene_id "HERVK11_22q11.21"; transcript_id "HERVK11_22q11.21"; locus "HERVK11_22q11.21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0104"; repClass "LTR"; repEnd "6851"; repFamily "ERVK"; repLeft "-1102"; repStart "6442"; ### ERVLE_22q11.21a ### chr22 rmsk gene 20333060 20333697 . + . gene_id "ERVLE_22q11.21a"; transcript_id "ERVLE_22q11.21a"; locus "ERVLE_22q11.21a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3563"; model_cov "709"; model_pct "12.5"; chr22 rmsk exon 20333060 20333697 613 + . gene_id "ERVLE_22q11.21a"; transcript_id "ERVLE_22q11.21a"; locus "ERVLE_22q11.21a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3563"; repClass "LTR"; repEnd "1524"; repFamily "ERVL"; repLeft "-4143"; repStart "815"; ### MER41_22q11.21 ### chr22 rmsk gene 20655240 20656294 . - . gene_id "MER41_22q11.21"; transcript_id "MER41_22q11.21"; locus "MER41_22q11.21"; category "internal"; intModel "MER41-int"; locid "MER41-int_0547"; model_cov "685"; model_pct "11.5"; chr22 rmsk exon 20655240 20655828 2314 - . gene_id "MER41_22q11.21"; transcript_id "MER41_22q11.21"; locus "MER41_22q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0547"; repClass "LTR"; repEnd "3229"; repFamily "ERV1"; repLeft "2715"; repStart "-2717"; chr22 rmsk exon 20655804 20655950 611 - . gene_id "MER41_22q11.21"; transcript_id "MER41_22q11.21"; locus "MER41_22q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0547"; repClass "LTR"; repEnd "-163"; repFamily "ERV1"; repLeft "-302"; repStart "-6109"; chr22 rmsk exon 20656260 20656294 611 - . gene_id "MER41_22q11.21"; transcript_id "MER41_22q11.21"; locus "MER41_22q11.21"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0547"; repClass "LTR"; repEnd "-303"; repFamily "ERV1"; repLeft "-335"; repStart "-6249"; ### ERVLB4_22q11.21b ### chr22 rmsk gene 21161004 21161640 . + . gene_id "ERVLB4_22q11.21b"; transcript_id "ERVLB4_22q11.21b"; locus "ERVLB4_22q11.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1748"; model_cov "638"; model_pct "11.2"; chr22 rmsk exon 21161004 21161640 439 + . gene_id "ERVLB4_22q11.21b"; transcript_id "ERVLB4_22q11.21b"; locus "ERVLB4_22q11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1748"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "-4143"; repStart "933"; ### ERVLE_22q11.21b ### chr22 rmsk gene 21330981 21331618 . - . gene_id "ERVLE_22q11.21b"; transcript_id "ERVLE_22q11.21b"; locus "ERVLE_22q11.21b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3564"; model_cov "709"; model_pct "12.5"; chr22 rmsk exon 21330981 21331618 655 - . gene_id "ERVLE_22q11.21b"; transcript_id "ERVLE_22q11.21b"; locus "ERVLE_22q11.21b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3564"; repClass "LTR"; repEnd "1524"; repFamily "ERVL"; repLeft "815"; repStart "-4143"; ### ERV316A3_22q11.22a ### chr22 rmsk gene 22224581 22226044 . - . gene_id "ERV316A3_22q11.22a"; transcript_id "ERV316A3_22q11.22a"; locus "ERV316A3_22q11.22a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2729"; model_cov "1112"; model_pct "21.3"; chr22 rmsk exon 22224581 22225054 1207 - . gene_id "ERV316A3_22q11.22a"; transcript_id "ERV316A3_22q11.22a"; locus "ERV316A3_22q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2729"; repClass "LTR"; repEnd "3247"; repFamily "ERVL"; repLeft "2783"; repStart "-1979"; chr22 rmsk exon 22225079 22225277 732 - . gene_id "ERV316A3_22q11.22a"; transcript_id "ERV316A3_22q11.22a"; locus "ERV316A3_22q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2729"; repClass "LTR"; repEnd "3113"; repFamily "ERVL"; repLeft "2912"; repStart "-2113"; chr22 rmsk exon 22225275 22225439 650 - . gene_id "ERV316A3_22q11.22a"; transcript_id "ERV316A3_22q11.22a"; locus "ERV316A3_22q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2729"; repClass "LTR"; repEnd "979"; repFamily "ERVL"; repLeft "808"; repStart "-4247"; chr22 rmsk exon 22225798 22226044 662 - . gene_id "ERV316A3_22q11.22a"; transcript_id "ERV316A3_22q11.22a"; locus "ERV316A3_22q11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2729"; repClass "LTR"; repEnd "816"; repFamily "ERVL"; repLeft "540"; repStart "-4410"; ### ERVLB4_22q11.22a ### chr22 rmsk gene 22262466 22263618 . - . gene_id "ERVLB4_22q11.22a"; transcript_id "ERVLB4_22q11.22a"; locus "ERVLB4_22q11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1749"; model_cov "1019"; model_pct "17.8"; chr22 rmsk exon 22262466 22263272 3439 - . gene_id "ERVLB4_22q11.22a"; transcript_id "ERVLB4_22q11.22a"; locus "ERVLB4_22q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1749"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr22 rmsk exon 22263389 22263576 961 - . gene_id "ERVLB4_22q11.22a"; transcript_id "ERVLB4_22q11.22a"; locus "ERVLB4_22q11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1749"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; chr22 rmsk exon 22263599 22263618 264 - . gene_id "ERVLB4_22q11.22a"; transcript_id "ERVLB4_22q11.22a"; locus "ERVLB4_22q11.22a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1749"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "339"; repStart "-40"; ### HERVL_22q11.22a ### chr22 rmsk gene 22384866 22389982 . - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1256"; model_cov "3382"; model_pct "59.8"; chr22 rmsk exon 22384866 22385254 3027 - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1256"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "55"; repStart "0"; chr22 rmsk exon 22385557 22385610 3027 - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1256"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "1"; repStart "-390"; chr22 rmsk exon 22385611 22386937 11956 - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1256"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4321"; repStart "0"; chr22 rmsk exon 22387524 22387972 11956 - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1256"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "3883"; repStart "-1334"; chr22 rmsk exon 22388387 22389982 15315 - . gene_id "HERVL_22q11.22a"; transcript_id "HERVL_22q11.22a"; locus "HERVL_22q11.22a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1256"; repClass "LTR"; repEnd "3882"; repFamily "ERVL"; repLeft "2270"; repStart "-1772"; ### HERVL_22q11.22b ### chr22 rmsk gene 22436423 22438613 . - . gene_id "HERVL_22q11.22b"; transcript_id "HERVL_22q11.22b"; locus "HERVL_22q11.22b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1257"; model_cov "1348"; model_pct "23.8"; chr22 rmsk exon 22436423 22436839 2982 - . gene_id "HERVL_22q11.22b"; transcript_id "HERVL_22q11.22b"; locus "HERVL_22q11.22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1257"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr22 rmsk exon 22436840 22438054 9495 - . gene_id "HERVL_22q11.22b"; transcript_id "HERVL_22q11.22b"; locus "HERVL_22q11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1257"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4440"; repStart "0"; chr22 rmsk exon 22438164 22438298 1114 - . gene_id "HERVL_22q11.22b"; transcript_id "HERVL_22q11.22b"; locus "HERVL_22q11.22b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1257"; repClass "LTR"; repEnd "4312"; repFamily "ERVL"; repLeft "4178"; repStart "-1342"; chr22 rmsk exon 22438299 22438613 2533 - . gene_id "HERVL_22q11.22b"; transcript_id "HERVL_22q11.22b"; locus "HERVL_22q11.22b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1257"; repClass "LTR"; repEnd "315"; repFamily "ERVL"; repLeft "1"; repStart "-129"; ### HERVI_22q11.22 ### chr22 rmsk gene 22452716 22459455 . + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0039"; model_cov "5656"; model_pct "72.7"; chr22 rmsk exon 22452716 22453271 3685 + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0039"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 22453275 22455413 7552 + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0039"; repClass "LTR"; repEnd "2321"; repFamily "ERV1"; repLeft "-5464"; repStart "186"; chr22 rmsk exon 22455398 22455697 1426 + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0039"; repClass "LTR"; repEnd "2869"; repFamily "ERV1"; repLeft "-4916"; repStart "2564"; chr22 rmsk exon 22455678 22458898 17140 + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0039"; repClass "LTR"; repEnd "7784"; repFamily "ERV1"; repLeft "-1"; repStart "4568"; chr22 rmsk exon 22458902 22459455 3770 + . gene_id "HERVI_22q11.22"; transcript_id "HERVI_22q11.22"; locus "HERVI_22q11.22"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0039"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_22q11.22 ### chr22 rmsk gene 22459938 22465541 . - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0213"; model_cov "3513"; model_pct "39.4"; chr22 rmsk exon 22459938 22460540 2955 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr22 rmsk exon 22460543 22460826 1450 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8659"; repStart "0"; chr22 rmsk exon 22461314 22461388 357 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "8355"; repStart "-484"; chr22 rmsk exon 22461408 22461727 1671 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6594"; repStart "-2007"; chr22 rmsk exon 22462244 22462657 2837 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "6578"; repFamily "ERV1"; repLeft "6162"; repStart "-2341"; chr22 rmsk exon 22462629 22463300 4347 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "5592"; repFamily "ERV1"; repLeft "4901"; repStart "-3327"; chr22 rmsk exon 22463304 22463440 845 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "4676"; repFamily "ERV1"; repLeft "4539"; repStart "-4243"; chr22 rmsk exon 22463434 22463632 1271 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "3078"; repStart "-5635"; chr22 rmsk exon 22463622 22464929 3765 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "1406"; repFamily "ERV1"; repLeft "1"; repStart "-7513"; chr22 rmsk exon 22464932 22465541 2789 - . gene_id "HUERSP3_22q11.22"; transcript_id "HUERSP3_22q11.22"; locus "HUERSP3_22q11.22"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0213"; repClass "LTR"; repEnd "665"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERV316A3_22q11.22b ### chr22 rmsk gene 22655118 22655584 . - . gene_id "ERV316A3_22q11.22b"; transcript_id "ERV316A3_22q11.22b"; locus "ERV316A3_22q11.22b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2731"; model_cov "572"; model_pct "10.9"; chr22 rmsk exon 22655118 22655584 801 - . gene_id "ERV316A3_22q11.22b"; transcript_id "ERV316A3_22q11.22b"; locus "ERV316A3_22q11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2731"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "2359"; repStart "-2295"; ### ERVLB4_22q11.22b ### chr22 rmsk gene 22687579 22689195 . - . gene_id "ERVLB4_22q11.22b"; transcript_id "ERVLB4_22q11.22b"; locus "ERVLB4_22q11.22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1750"; model_cov "1675"; model_pct "29.3"; chr22 rmsk exon 22687579 22689195 4402 - . gene_id "ERVLB4_22q11.22b"; transcript_id "ERVLB4_22q11.22b"; locus "ERVLB4_22q11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1750"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "3280"; repStart "-759"; ### ERV316A3_22q11.22c ### chr22 rmsk gene 22706347 22707033 . - . gene_id "ERV316A3_22q11.22c"; transcript_id "ERV316A3_22q11.22c"; locus "ERV316A3_22q11.22c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2732"; model_cov "838"; model_pct "16.0"; chr22 rmsk exon 22706347 22706563 312 - . gene_id "ERV316A3_22q11.22c"; transcript_id "ERV316A3_22q11.22c"; locus "ERV316A3_22q11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2732"; repClass "LTR"; repEnd "3409"; repFamily "ERVL"; repLeft "3195"; repStart "-1817"; chr22 rmsk exon 22706559 22707033 545 - . gene_id "ERV316A3_22q11.22c"; transcript_id "ERV316A3_22q11.22c"; locus "ERV316A3_22q11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2732"; repClass "LTR"; repEnd "2875"; repFamily "ERVL"; repLeft "2251"; repStart "-2351"; ### ERVLB4_22q11.22c ### chr22 rmsk gene 22748219 22749827 . - . gene_id "ERVLB4_22q11.22c"; transcript_id "ERVLB4_22q11.22c"; locus "ERVLB4_22q11.22c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1751"; model_cov "1673"; model_pct "29.3"; chr22 rmsk exon 22748219 22749827 4721 - . gene_id "ERVLB4_22q11.22c"; transcript_id "ERVLB4_22q11.22c"; locus "ERVLB4_22q11.22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1751"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "3282"; repStart "-759"; ### ERVLE_22q11.22a ### chr22 rmsk gene 22764411 22765274 . - . gene_id "ERVLE_22q11.22a"; transcript_id "ERVLE_22q11.22a"; locus "ERVLE_22q11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3567"; model_cov "595"; model_pct "10.5"; chr22 rmsk exon 22764411 22764832 810 - . gene_id "ERVLE_22q11.22a"; transcript_id "ERVLE_22q11.22a"; locus "ERVLE_22q11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3567"; repClass "LTR"; repEnd "3315"; repFamily "ERVL"; repLeft "2858"; repStart "-2352"; chr22 rmsk exon 22765144 22765274 810 - . gene_id "ERVLE_22q11.22a"; transcript_id "ERVLE_22q11.22a"; locus "ERVLE_22q11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3567"; repClass "LTR"; repEnd "2857"; repFamily "ERVL"; repLeft "2719"; repStart "-2810"; ### HERVL_22q11.22c ### chr22 rmsk gene 22794422 22796348 . + . gene_id "HERVL_22q11.22c"; transcript_id "HERVL_22q11.22c"; locus "HERVL_22q11.22c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1259"; model_cov "1617"; model_pct "28.6"; chr22 rmsk exon 22794422 22794901 12625 + . gene_id "HERVL_22q11.22c"; transcript_id "HERVL_22q11.22c"; locus "HERVL_22q11.22c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1259"; repClass "LTR"; repEnd "2669"; repFamily "ERVL"; repLeft "-2985"; repStart "2190"; chr22 rmsk exon 22795196 22796348 12625 + . gene_id "HERVL_22q11.22c"; transcript_id "HERVL_22q11.22c"; locus "HERVL_22q11.22c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1259"; repClass "LTR"; repEnd "3808"; repFamily "ERVL"; repLeft "-1846"; repStart "2670"; ### ERVLB4_22q11.22d ### chr22 rmsk gene 22812580 22814391 . - . gene_id "ERVLB4_22q11.22d"; transcript_id "ERVLB4_22q11.22d"; locus "ERVLB4_22q11.22d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1752"; model_cov "1924"; model_pct "33.7"; chr22 rmsk exon 22812580 22814135 4385 - . gene_id "ERVLB4_22q11.22d"; transcript_id "ERVLB4_22q11.22d"; locus "ERVLB4_22q11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1752"; repClass "LTR"; repEnd "4955"; repFamily "ERVL"; repLeft "3307"; repStart "-759"; chr22 rmsk exon 22814161 22814391 541 - . gene_id "ERVLB4_22q11.22d"; transcript_id "ERVLB4_22q11.22d"; locus "ERVLB4_22q11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1752"; repClass "LTR"; repEnd "1670"; repFamily "ERVL"; repLeft "1394"; repStart "-4044"; ### ERV316A3_22q11.22d ### chr22 rmsk gene 22851449 22853004 . - . gene_id "ERV316A3_22q11.22d"; transcript_id "ERV316A3_22q11.22d"; locus "ERV316A3_22q11.22d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2735"; model_cov "1142"; model_pct "21.9"; chr22 rmsk exon 22851449 22851817 531 - . gene_id "ERV316A3_22q11.22d"; transcript_id "ERV316A3_22q11.22d"; locus "ERV316A3_22q11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2735"; repClass "LTR"; repEnd "3453"; repFamily "ERVL"; repLeft "3072"; repStart "-1773"; chr22 rmsk exon 22852264 22853004 1103 - . gene_id "ERV316A3_22q11.22d"; transcript_id "ERV316A3_22q11.22d"; locus "ERV316A3_22q11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2735"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2221"; repStart "-2244"; ### ERVLE_22q11.22b ### chr22 rmsk gene 22950813 22954279 . + . gene_id "ERVLE_22q11.22b"; transcript_id "ERVLE_22q11.22b"; locus "ERVLE_22q11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3569"; model_cov "2348"; model_pct "41.4"; chr22 rmsk exon 22950813 22952005 4604 + . gene_id "ERVLE_22q11.22b"; transcript_id "ERVLE_22q11.22b"; locus "ERVLE_22q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3569"; repClass "LTR"; repEnd "4105"; repFamily "ERVL"; repLeft "-1562"; repStart "2877"; chr22 rmsk exon 22952448 22952928 4604 + . gene_id "ERVLE_22q11.22b"; transcript_id "ERVLE_22q11.22b"; locus "ERVLE_22q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3569"; repClass "LTR"; repEnd "4637"; repFamily "ERVL"; repLeft "-1030"; repStart "4106"; chr22 rmsk exon 22953804 22954279 732 + . gene_id "ERVLE_22q11.22b"; transcript_id "ERVLE_22q11.22b"; locus "ERVLE_22q11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3569"; repClass "LTR"; repEnd "5239"; repFamily "ERVL"; repLeft "-428"; repStart "4650"; ### HUERSP3B_22q11.22 ### chr22 rmsk gene 22975079 22981443 . + . gene_id "HUERSP3B_22q11.22"; transcript_id "HUERSP3B_22q11.22"; locus "HUERSP3B_22q11.22"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0135"; model_cov "5435"; model_pct "73.3"; chr22 rmsk exon 22975079 22975665 3094 + . gene_id "HUERSP3B_22q11.22"; transcript_id "HUERSP3B_22q11.22"; locus "HUERSP3B_22q11.22"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0135"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 22975683 22976720 6454 + . gene_id "HUERSP3B_22q11.22"; transcript_id "HUERSP3B_22q11.22"; locus "HUERSP3B_22q11.22"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0135"; repClass "LTR"; repEnd "-451"; repFamily "ERV1"; repLeft "-7869"; repStart "-1494"; chr22 rmsk exon 22976721 22977729 6955 + . gene_id "HUERSP3B_22q11.22"; transcript_id "HUERSP3B_22q11.22"; locus "HUERSP3B_22q11.22"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0135"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "1769"; chr22 rmsk exon 22978161 22981443 23884 + . gene_id "HUERSP3B_22q11.22"; transcript_id "HUERSP3B_22q11.22"; locus "HUERSP3B_22q11.22"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0135"; repClass "LTR"; repEnd "6822"; repFamily "ERV1"; repLeft "-596"; repStart "3303"; ### HUERSP2_22q11.22 ### chr22 rmsk gene 23012824 23014429 . - . gene_id "HUERSP2_22q11.22"; transcript_id "HUERSP2_22q11.22"; locus "HUERSP2_22q11.22"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0123"; model_cov "502"; model_pct "16.3"; chr22 rmsk exon 23012824 23013082 1145 - . gene_id "HUERSP2_22q11.22"; transcript_id "HUERSP2_22q11.22"; locus "HUERSP2_22q11.22"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0123"; repClass "LTR"; repEnd "530"; repFamily "ERV1"; repLeft "279"; repStart "-2558"; chr22 rmsk exon 23013394 23013643 1145 - . gene_id "HUERSP2_22q11.22"; transcript_id "HUERSP2_22q11.22"; locus "HUERSP2_22q11.22"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0123"; repClass "LTR"; repEnd "-3541"; repFamily "ERV1"; repLeft "-3792"; repStart "-6629"; chr22 rmsk exon 23013698 23014429 4744 - . gene_id "HUERSP2_22q11.22"; transcript_id "HUERSP2_22q11.22"; locus "HUERSP2_22q11.22"; repName "LTR1C"; geneRegion "ltr"; locid "HUERS-P2-int_0123"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_22q11.22a ### chr22 rmsk gene 23023956 23026083 . + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0475"; model_cov "1133"; model_pct "16.8"; chr22 rmsk exon 23023956 23024639 5447 + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0475"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "200"; chr22 rmsk exon 23024640 23024720 390 + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0475"; repClass "LTR"; repEnd "98"; repFamily "ERV1"; repLeft "-6660"; repStart "4"; chr22 rmsk exon 23024719 23025085 10727 + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0475"; repClass "LTR"; repEnd "2733"; repFamily "ERV1"; repLeft "-4025"; repStart "2373"; chr22 rmsk exon 23025397 23025745 10727 + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0475"; repClass "LTR"; repEnd "3061"; repFamily "ERV1"; repLeft "-3697"; repStart "2734"; chr22 rmsk exon 23026020 23026083 10727 + . gene_id "MER4B_22q11.22a"; transcript_id "MER4B_22q11.22a"; locus "MER4B_22q11.22a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0475"; repClass "LTR"; repEnd "3414"; repFamily "ERV1"; repLeft "-3344"; repStart "3062"; ### MER4B_22q11.22b ### chr22 rmsk gene 23029152 23032525 . + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0476"; model_cov "1470"; model_pct "21.8"; chr22 rmsk exon 23029152 23029348 10727 + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0476"; repClass "LTR"; repEnd "4256"; repFamily "ERV1"; repLeft "-2502"; repStart "4011"; chr22 rmsk exon 23029822 23030104 1683 + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0476"; repClass "LTR"; repEnd "5223"; repFamily "ERV1"; repLeft "-1535"; repStart "4943"; chr22 rmsk exon 23030091 23030841 4057 + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0476"; repClass "LTR"; repEnd "6001"; repFamily "ERV1"; repLeft "-757"; repStart "5281"; chr22 rmsk exon 23031449 23031666 1315 + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0476"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6533"; chr22 rmsk exon 23031671 23032525 5662 + . gene_id "MER4B_22q11.22b"; transcript_id "MER4B_22q11.22b"; locus "MER4B_22q11.22b"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0476"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML2_22q11.23 ### chr22 rmsk gene 23536062 23546900 . + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0123"; model_cov "7693"; model_pct "100.0"; chr22 rmsk exon 23536062 23537026 6743 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "964"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr22 rmsk exon 23537028 23537189 1108 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "163"; repFamily "ERVK"; repLeft "-7373"; repStart "1"; chr22 rmsk exon 23537190 23537250 437 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "942"; chr22 rmsk exon 23537740 23538729 7295 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 23538730 23546008 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7267"; repFamily "ERVK"; repLeft "-269"; repStart "1"; chr22 rmsk exon 23546306 23546576 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7533"; repFamily "ERVK"; repLeft "-3"; repStart "7268"; chr22 rmsk exon 23546582 23546900 2050 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "331"; repFamily "ERVK"; repLeft "-671"; repStart "1"; ### ERVLE_22q11.23a ### chr22 rmsk gene 23588695 23590131 . - . gene_id "ERVLE_22q11.23a"; transcript_id "ERVLE_22q11.23a"; locus "ERVLE_22q11.23a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3571"; model_cov "751"; model_pct "13.3"; chr22 rmsk exon 23588695 23588875 595 - . gene_id "ERVLE_22q11.23a"; transcript_id "ERVLE_22q11.23a"; locus "ERVLE_22q11.23a"; repName "MLT2E"; geneRegion "ltr"; locid "ERVL-E-int_3571"; repClass "LTR"; repEnd "196"; repFamily "ERVL"; repLeft "10"; repStart "-432"; chr22 rmsk exon 23589469 23590131 949 - . gene_id "ERVLE_22q11.23a"; transcript_id "ERVLE_22q11.23a"; locus "ERVLE_22q11.23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3571"; repClass "LTR"; repEnd "5514"; repFamily "ERVL"; repLeft "4763"; repStart "-153"; ### ERVLE_22q11.23b ### chr22 rmsk gene 23871875 23873025 . - . gene_id "ERVLE_22q11.23b"; transcript_id "ERVLE_22q11.23b"; locus "ERVLE_22q11.23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3572"; model_cov "626"; model_pct "11.0"; chr22 rmsk exon 23871875 23872038 483 - . gene_id "ERVLE_22q11.23b"; transcript_id "ERVLE_22q11.23b"; locus "ERVLE_22q11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3572"; repClass "LTR"; repEnd "3402"; repFamily "ERVL"; repLeft "3228"; repStart "-2265"; chr22 rmsk exon 23872592 23873025 1096 - . gene_id "ERVLE_22q11.23b"; transcript_id "ERVLE_22q11.23b"; locus "ERVLE_22q11.23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3572"; repClass "LTR"; repEnd "3020"; repFamily "ERVL"; repLeft "2568"; repStart "-2647"; ### PRIMA41_22q11.23 ### chr22 rmsk gene 23915159 23919868 . + . gene_id "PRIMA41_22q11.23"; transcript_id "PRIMA41_22q11.23"; locus "PRIMA41_22q11.23"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0164"; model_cov "1215"; model_pct "15.7"; chr22 rmsk exon 23915159 23915407 400 + . gene_id "PRIMA41_22q11.23"; transcript_id "PRIMA41_22q11.23"; locus "PRIMA41_22q11.23"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0164"; repClass "LTR"; repEnd "3940"; repFamily "ERV1"; repLeft "-3816"; repStart "3514"; chr22 rmsk exon 23915886 23916338 796 + . gene_id "PRIMA41_22q11.23"; transcript_id "PRIMA41_22q11.23"; locus "PRIMA41_22q11.23"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0164"; repClass "LTR"; repEnd "5838"; repFamily "ERV1"; repLeft "-1918"; repStart "5387"; chr22 rmsk exon 23918828 23919080 341 + . gene_id "PRIMA41_22q11.23"; transcript_id "PRIMA41_22q11.23"; locus "PRIMA41_22q11.23"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0164"; repClass "LTR"; repEnd "7235"; repFamily "ERV1"; repLeft "-521"; repStart "7081"; chr22 rmsk exon 23919672 23919868 320 + . gene_id "PRIMA41_22q11.23"; transcript_id "PRIMA41_22q11.23"; locus "PRIMA41_22q11.23"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0164"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "-251"; repStart "7321"; ### HERVL40_22q11.23 ### chr22 rmsk gene 24531131 24538320 . - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0455"; model_cov "3857"; model_pct "69.7"; chr22 rmsk exon 24531131 24531560 1591 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "1"; repStart "-85"; chr22 rmsk exon 24531561 24531758 901 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5320"; repStart "0"; chr22 rmsk exon 24532072 24532202 901 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "5319"; repFamily "ERVL"; repLeft "5246"; repStart "-211"; chr22 rmsk exon 24532942 24533064 368 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "5206"; repFamily "ERVL"; repLeft "5074"; repStart "-324"; chr22 rmsk exon 24533220 24533441 400 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "5039"; repFamily "ERVL"; repLeft "4867"; repStart "-491"; chr22 rmsk exon 24533698 24533820 414 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "4832"; repFamily "ERVL"; repLeft "4704"; repStart "-698"; chr22 rmsk exon 24533788 24534439 6971 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "4025"; repStart "-872"; chr22 rmsk exon 24534866 24534929 6971 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "4024"; repFamily "ERVL"; repLeft "3970"; repStart "-1506"; chr22 rmsk exon 24535233 24535662 6971 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "3531"; repStart "-1561"; chr22 rmsk exon 24535960 24536622 6971 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "3530"; repFamily "ERVL"; repLeft "2851"; repStart "-2000"; chr22 rmsk exon 24536653 24537106 2284 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "2753"; repFamily "ERVL"; repLeft "2291"; repStart "-2777"; chr22 rmsk exon 24537408 24537636 2284 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "2290"; repFamily "ERVL"; repLeft "2049"; repStart "-3240"; chr22 rmsk exon 24537691 24538320 1695 - . gene_id "HERVL40_22q11.23"; transcript_id "HERVL40_22q11.23"; locus "HERVL40_22q11.23"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0455"; repClass "LTR"; repEnd "1531"; repFamily "ERVL"; repLeft "896"; repStart "-3999"; ### HUERSP3B_22q12.1 ### chr22 rmsk gene 25620059 25622022 . - . gene_id "HUERSP3B_22q12.1"; transcript_id "HUERSP3B_22q12.1"; locus "HUERSP3B_22q12.1"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0136"; model_cov "1521"; model_pct "20.5"; chr22 rmsk exon 25620059 25620603 3271 - . gene_id "HUERSP3B_22q12.1"; transcript_id "HUERSP3B_22q12.1"; locus "HUERSP3B_22q12.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0136"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chr22 rmsk exon 25620605 25622022 6080 - . gene_id "HUERSP3B_22q12.1"; transcript_id "HUERSP3B_22q12.1"; locus "HUERSP3B_22q12.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0136"; repClass "LTR"; repEnd "7411"; repFamily "ERV1"; repLeft "5890"; repStart "-7"; ### ERVL_22q12.1 ### chr22 rmsk gene 25637709 25638790 . - . gene_id "ERVL_22q12.1"; transcript_id "ERVL_22q12.1"; locus "ERVL_22q12.1"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0454"; model_cov "774"; model_pct "13.4"; chr22 rmsk exon 25637709 25638035 1287 - . gene_id "ERVL_22q12.1"; transcript_id "ERVL_22q12.1"; locus "ERVL_22q12.1"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0454"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "73"; repStart "-9"; chr22 rmsk exon 25638060 25638790 3601 - . gene_id "ERVL_22q12.1"; transcript_id "ERVL_22q12.1"; locus "ERVL_22q12.1"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0454"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "4981"; repStart "-2"; ### HERVH_22q12.1 ### chr22 rmsk gene 27742307 27745128 . + . gene_id "HERVH_22q12.1"; transcript_id "HERVH_22q12.1"; locus "HERVH_22q12.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1211"; model_cov "2285"; model_pct "29.6"; chr22 rmsk exon 27742307 27742413 957 + . gene_id "HERVH_22q12.1"; transcript_id "HERVH_22q12.1"; locus "HERVH_22q12.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1211"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "344"; chr22 rmsk exon 27742433 27744537 13875 + . gene_id "HERVH_22q12.1"; transcript_id "HERVH_22q12.1"; locus "HERVH_22q12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1211"; repClass "LTR"; repEnd "2141"; repFamily "ERV1"; repLeft "-5572"; repStart "1"; chr22 rmsk exon 27744534 27744682 985 + . gene_id "HERVH_22q12.1"; transcript_id "HERVH_22q12.1"; locus "HERVH_22q12.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1211"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7568"; chr22 rmsk exon 27744683 27745128 2925 + . gene_id "HERVH_22q12.1"; transcript_id "HERVH_22q12.1"; locus "HERVH_22q12.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1211"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "-38"; repStart "1"; ### ERVLE_22q12.1 ### chr22 rmsk gene 28236378 28236985 . + . gene_id "ERVLE_22q12.1"; transcript_id "ERVLE_22q12.1"; locus "ERVLE_22q12.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3573"; model_cov "628"; model_pct "11.1"; chr22 rmsk exon 28236378 28236842 1796 + . gene_id "ERVLE_22q12.1"; transcript_id "ERVLE_22q12.1"; locus "ERVLE_22q12.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3573"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-5225"; repStart "1"; chr22 rmsk exon 28236853 28236985 447 + . gene_id "ERVLE_22q12.1"; transcript_id "ERVLE_22q12.1"; locus "ERVLE_22q12.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3573"; repClass "LTR"; repEnd "725"; repFamily "ERVL"; repLeft "-4942"; repStart "538"; ### HERVIP10FH_22q12.2 ### chr22 rmsk gene 29413279 29415167 . - . gene_id "HERVIP10FH_22q12.2"; transcript_id "HERVIP10FH_22q12.2"; locus "HERVIP10FH_22q12.2"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0198"; model_cov "1926"; model_pct "37.7"; chr22 rmsk exon 29413279 29414968 12323 - . gene_id "HERVIP10FH_22q12.2"; transcript_id "HERVIP10FH_22q12.2"; locus "HERVIP10FH_22q12.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0198"; repClass "LTR"; repEnd "2919"; repFamily "ERV1"; repLeft "1192"; repStart "-2183"; chr22 rmsk exon 29414974 29415167 851 - . gene_id "HERVIP10FH_22q12.2"; transcript_id "HERVIP10FH_22q12.2"; locus "HERVIP10FH_22q12.2"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0198"; repClass "LTR"; repEnd "-2283"; repFamily "ERV1"; repLeft "-2482"; repStart "-7385"; ### LTR57_22q12.2 ### chr22 rmsk gene 30595999 30600038 . + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0186"; model_cov "1270"; model_pct "23.8"; chr22 rmsk exon 30595999 30596366 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "638"; repFamily "ERVL"; repLeft "-4705"; repStart "303"; chr22 rmsk exon 30596485 30596678 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "838"; repFamily "ERVL"; repLeft "-4505"; repStart "639"; chr22 rmsk exon 30598400 30598454 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "867"; repFamily "ERVL"; repLeft "-4476"; repStart "839"; chr22 rmsk exon 30598729 30598885 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "1025"; repFamily "ERVL"; repLeft "-4318"; repStart "868"; chr22 rmsk exon 30599197 30599617 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "1465"; repFamily "ERVL"; repLeft "-3878"; repStart "1026"; chr22 rmsk exon 30599929 30600038 4164 + . gene_id "LTR57_22q12.2"; transcript_id "LTR57_22q12.2"; locus "LTR57_22q12.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0186"; repClass "LTR"; repEnd "1578"; repFamily "ERVL"; repLeft "-3765"; repStart "1466"; ### HML1_22q12.2 ### chr22 rmsk gene 30675434 30679923 . - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0124"; model_cov "3645"; model_pct "59.8"; chr22 rmsk exon 30675434 30675772 2688 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr22 rmsk exon 30675781 30675902 825 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "6093"; repFamily "ERVK"; repLeft "5960"; repStart "-3"; chr22 rmsk exon 30675960 30676037 622 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "5902"; repFamily "ERVK"; repLeft "5824"; repStart "-194"; chr22 rmsk exon 30676097 30676183 535 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "5764"; repFamily "ERVK"; repLeft "5656"; repStart "-332"; chr22 rmsk exon 30676208 30676734 3879 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "5489"; repFamily "ERVK"; repLeft "4928"; repStart "-607"; chr22 rmsk exon 30676719 30679198 19440 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "2867"; repFamily "ERVK"; repLeft "375"; repStart "-3229"; chr22 rmsk exon 30679299 30679582 2017 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "274"; repFamily "ERVK"; repLeft "1"; repStart "-5822"; chr22 rmsk exon 30679583 30679923 2772 - . gene_id "HML1_22q12.2"; transcript_id "HML1_22q12.2"; locus "HML1_22q12.2"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0124"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_22q12.2 ### chr22 rmsk gene 30732332 30733221 . - . gene_id "ERVLB4_22q12.2"; transcript_id "ERVLB4_22q12.2"; locus "ERVLB4_22q12.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1754"; model_cov "962"; model_pct "16.8"; chr22 rmsk exon 30732332 30733221 1062 - . gene_id "ERVLB4_22q12.2"; transcript_id "ERVLB4_22q12.2"; locus "ERVLB4_22q12.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1754"; repClass "LTR"; repEnd "5098"; repFamily "ERVL"; repLeft "4136"; repStart "-616"; ### MER41_22q12.3a ### chr22 rmsk gene 32126246 32127994 . + . gene_id "MER41_22q12.3a"; transcript_id "MER41_22q12.3a"; locus "MER41_22q12.3a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0548"; model_cov "891"; model_pct "15.0"; chr22 rmsk exon 32126246 32126518 1579 + . gene_id "MER41_22q12.3a"; transcript_id "MER41_22q12.3a"; locus "MER41_22q12.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0548"; repClass "LTR"; repEnd "1859"; repFamily "ERV1"; repLeft "-4087"; repStart "1575"; chr22 rmsk exon 32127013 32127492 2641 + . gene_id "MER41_22q12.3a"; transcript_id "MER41_22q12.3a"; locus "MER41_22q12.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0548"; repClass "LTR"; repEnd "3087"; repFamily "ERV1"; repLeft "-2859"; repStart "2480"; chr22 rmsk exon 32127926 32127994 533 + . gene_id "MER41_22q12.3a"; transcript_id "MER41_22q12.3a"; locus "MER41_22q12.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0548"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "566"; ### HERVIP10FH_22q12.3 ### chr22 rmsk gene 32138160 32140576 . + . gene_id "HERVIP10FH_22q12.3"; transcript_id "HERVIP10FH_22q12.3"; locus "HERVIP10FH_22q12.3"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0199"; model_cov "1931"; model_pct "37.8"; chr22 rmsk exon 32138160 32138244 691 + . gene_id "HERVIP10FH_22q12.3"; transcript_id "HERVIP10FH_22q12.3"; locus "HERVIP10FH_22q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0199"; repClass "LTR"; repEnd "-2398"; repFamily "ERV1"; repLeft "-7500"; repStart "-2482"; chr22 rmsk exon 32138273 32138354 691 + . gene_id "HERVIP10FH_22q12.3"; transcript_id "HERVIP10FH_22q12.3"; locus "HERVIP10FH_22q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0199"; repClass "LTR"; repEnd "-2284"; repFamily "ERV1"; repLeft "-7386"; repStart "-2397"; chr22 rmsk exon 32138351 32139805 12452 + . gene_id "HERVIP10FH_22q12.3"; transcript_id "HERVIP10FH_22q12.3"; locus "HERVIP10FH_22q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0199"; repClass "LTR"; repEnd "2662"; repFamily "ERV1"; repLeft "-2440"; repStart "1184"; chr22 rmsk exon 32140316 32140576 12452 + . gene_id "HERVIP10FH_22q12.3"; transcript_id "HERVIP10FH_22q12.3"; locus "HERVIP10FH_22q12.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0199"; repClass "LTR"; repEnd "2919"; repFamily "ERV1"; repLeft "-2183"; repStart "2663"; ### MER41_22q12.3b ### chr22 rmsk gene 32348497 32350244 . - . gene_id "MER41_22q12.3b"; transcript_id "MER41_22q12.3b"; locus "MER41_22q12.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0549"; model_cov "1143"; model_pct "19.2"; chr22 rmsk exon 32348497 32348564 453 - . gene_id "MER41_22q12.3b"; transcript_id "MER41_22q12.3b"; locus "MER41_22q12.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0549"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "566"; repStart "0"; chr22 rmsk exon 32348571 32348974 1212 - . gene_id "MER41_22q12.3b"; transcript_id "MER41_22q12.3b"; locus "MER41_22q12.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0549"; repClass "LTR"; repEnd "3561"; repFamily "ERV1"; repLeft "3143"; repStart "-2385"; chr22 rmsk exon 32349273 32349811 2426 - . gene_id "MER41_22q12.3b"; transcript_id "MER41_22q12.3b"; locus "MER41_22q12.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0549"; repClass "LTR"; repEnd "3228"; repFamily "ERV1"; repLeft "2791"; repStart "-2718"; chr22 rmsk exon 32349966 32350244 1484 - . gene_id "MER41_22q12.3b"; transcript_id "MER41_22q12.3b"; locus "MER41_22q12.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0549"; repClass "LTR"; repEnd "1862"; repFamily "ERV1"; repLeft "1574"; repStart "-4084"; ### HERVH_22q12.3a ### chr22 rmsk gene 32502754 32508503 . + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1212"; model_cov "4908"; model_pct "63.6"; chr22 rmsk exon 32502754 32503187 2864 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 32503188 32506175 18990 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr22 rmsk exon 32506170 32506317 866 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr22 rmsk exon 32506308 32506810 3291 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr22 rmsk exon 32506813 32507474 4161 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr22 rmsk exon 32507476 32507694 1356 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr22 rmsk exon 32507693 32508070 2397 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr22 rmsk exon 32508071 32508503 2702 + . gene_id "HERVH_22q12.3a"; transcript_id "HERVH_22q12.3a"; locus "HERVH_22q12.3a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1212"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_22q12.3a ### chr22 rmsk gene 32757105 32758743 . + . gene_id "HERVL_22q12.3a"; transcript_id "HERVL_22q12.3a"; locus "HERVL_22q12.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1262"; model_cov "877"; model_pct "15.5"; chr22 rmsk exon 32757105 32757294 6619 + . gene_id "HERVL_22q12.3a"; transcript_id "HERVL_22q12.3a"; locus "HERVL_22q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1262"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "-694"; repStart "4776"; chr22 rmsk exon 32757597 32758305 6619 + . gene_id "HERVL_22q12.3a"; transcript_id "HERVL_22q12.3a"; locus "HERVL_22q12.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1262"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4961"; chr22 rmsk exon 32758306 32758743 3140 + . gene_id "HERVL_22q12.3a"; transcript_id "HERVL_22q12.3a"; locus "HERVL_22q12.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1262"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER101_22q12.3 ### chr22 rmsk gene 33373468 33375729 . + . gene_id "MER101_22q12.3"; transcript_id "MER101_22q12.3"; locus "MER101_22q12.3"; category "internal"; intModel "MER101-int"; locid "MER101-int_0415"; model_cov "1743"; model_pct "26.3"; chr22 rmsk exon 33373468 33373516 266 + . gene_id "MER101_22q12.3"; transcript_id "MER101_22q12.3"; locus "MER101_22q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0415"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4282"; repStart "2309"; chr22 rmsk exon 33373564 33373696 5258 + . gene_id "MER101_22q12.3"; transcript_id "MER101_22q12.3"; locus "MER101_22q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0415"; repClass "LTR"; repEnd "2889"; repFamily "ERV1"; repLeft "-3750"; repStart "2753"; chr22 rmsk exon 33373996 33375384 5258 + . gene_id "MER101_22q12.3"; transcript_id "MER101_22q12.3"; locus "MER101_22q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0415"; repClass "LTR"; repEnd "4218"; repFamily "ERV1"; repLeft "-2421"; repStart "2890"; chr22 rmsk exon 33375499 33375729 1275 + . gene_id "MER101_22q12.3"; transcript_id "MER101_22q12.3"; locus "MER101_22q12.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0415"; repClass "LTR"; repEnd "4435"; repFamily "ERV1"; repLeft "-2204"; repStart "4204"; ### ERVLE_22q12.3a ### chr22 rmsk gene 33940248 33941123 . + . gene_id "ERVLE_22q12.3a"; transcript_id "ERVLE_22q12.3a"; locus "ERVLE_22q12.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3577"; model_cov "626"; model_pct "11.0"; chr22 rmsk exon 33940248 33940568 470 + . gene_id "ERVLE_22q12.3a"; transcript_id "ERVLE_22q12.3a"; locus "ERVLE_22q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3577"; repClass "LTR"; repEnd "745"; repFamily "ERVL"; repLeft "-4922"; repStart "432"; chr22 rmsk exon 33940707 33940782 322 + . gene_id "ERVLE_22q12.3a"; transcript_id "ERVLE_22q12.3a"; locus "ERVLE_22q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3577"; repClass "LTR"; repEnd "1093"; repFamily "ERVL"; repLeft "-4574"; repStart "1018"; chr22 rmsk exon 33940906 33941123 307 + . gene_id "ERVLE_22q12.3a"; transcript_id "ERVLE_22q12.3a"; locus "ERVLE_22q12.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3577"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "-1936"; repStart "3493"; ### HERVL18_22q12.3a ### chr22 rmsk gene 34324531 34325577 . + . gene_id "HERVL18_22q12.3a"; transcript_id "HERVL18_22q12.3a"; locus "HERVL18_22q12.3a"; category "internal"; intModel "HERVL18-int"; locid "HERVL18-int_0144"; model_cov "1158"; model_pct "19.1"; chr22 rmsk exon 34324531 34325577 4749 + . gene_id "HERVL18_22q12.3a"; transcript_id "HERVL18_22q12.3a"; locus "HERVL18_22q12.3a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0144"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "-2498"; repStart "2391"; ### HERVL18_22q12.3b ### chr22 rmsk gene 34332469 34335191 . - . gene_id "HERVL18_22q12.3b"; transcript_id "HERVL18_22q12.3b"; locus "HERVL18_22q12.3b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0145"; model_cov "2405"; model_pct "39.8"; chr22 rmsk exon 34332469 34333269 13127 - . gene_id "HERVL18_22q12.3b"; transcript_id "HERVL18_22q12.3b"; locus "HERVL18_22q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0145"; repClass "LTR"; repEnd "2407"; repFamily "ERVL"; repLeft "1599"; repStart "-3640"; chr22 rmsk exon 34333303 34334794 13127 - . gene_id "HERVL18_22q12.3b"; transcript_id "HERVL18_22q12.3b"; locus "HERVL18_22q12.3b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0145"; repClass "LTR"; repEnd "1598"; repFamily "ERVL"; repLeft "1"; repStart "-4449"; chr22 rmsk exon 34334803 34335191 1131 - . gene_id "HERVL18_22q12.3b"; transcript_id "HERVL18_22q12.3b"; locus "HERVL18_22q12.3b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0145"; repClass "LTR"; repEnd "355"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### PRIMA41_22q12.3 ### chr22 rmsk gene 34505411 34510720 . + . gene_id "PRIMA41_22q12.3"; transcript_id "PRIMA41_22q12.3"; locus "PRIMA41_22q12.3"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0165"; model_cov "3611"; model_pct "46.6"; chr22 rmsk exon 34505411 34505515 252 + . gene_id "PRIMA41_22q12.3"; transcript_id "PRIMA41_22q12.3"; locus "PRIMA41_22q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0165"; repClass "LTR"; repEnd "2747"; repFamily "ERV1"; repLeft "-5009"; repStart "2641"; chr22 rmsk exon 34506108 34508813 3438 + . gene_id "PRIMA41_22q12.3"; transcript_id "PRIMA41_22q12.3"; locus "PRIMA41_22q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0165"; repClass "LTR"; repEnd "5844"; repFamily "ERV1"; repLeft "-1912"; repStart "3104"; chr22 rmsk exon 34509954 34510720 3350 + . gene_id "PRIMA41_22q12.3"; transcript_id "PRIMA41_22q12.3"; locus "PRIMA41_22q12.3"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0165"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "6991"; ### HERVL_22q12.3b ### chr22 rmsk gene 34518823 34521872 . + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; category "opposite*"; intModel "HERVL-int"; locid "HERVL-int_1265"; model_cov "1685"; model_pct "29.8"; chr22 rmsk exon 34518823 34519443 7947 + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1265"; prev_strand "-"; repClass "LTR"; repEnd "1826"; repFamily "ERVL"; repLeft "1176"; repStart "-3828"; chr22 rmsk exon 34519443 34519713 1954 + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1265"; repClass "LTR"; repEnd "4044"; repFamily "ERVL"; repLeft "-1610"; repStart "3768"; chr22 rmsk exon 34520039 34520577 3834 + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1265"; repClass "LTR"; repEnd "4570"; repFamily "ERVL"; repLeft "-1084"; repStart "4032"; chr22 rmsk exon 34520577 34521434 6429 + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1265"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4783"; chr22 rmsk exon 34521435 34521872 3218 + . gene_id "HERVL_22q12.3b"; transcript_id "HERVL_22q12.3b"; locus "HERVL_22q12.3b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1265"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_22q12.3a ### chr22 rmsk gene 34666602 34667307 . - . gene_id "ERV316A3_22q12.3a"; transcript_id "ERV316A3_22q12.3a"; locus "ERV316A3_22q12.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2738"; model_cov "965"; model_pct "18.5"; chr22 rmsk exon 34666602 34667307 342 - . gene_id "ERV316A3_22q12.3a"; transcript_id "ERV316A3_22q12.3a"; locus "ERV316A3_22q12.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2738"; repClass "LTR"; repEnd "4878"; repFamily "ERVL"; repLeft "3913"; repStart "-348"; ### ERVLE_22q12.3b ### chr22 rmsk gene 34668457 34670215 . - . gene_id "ERVLE_22q12.3b"; transcript_id "ERVLE_22q12.3b"; locus "ERVLE_22q12.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3578"; model_cov "1522"; model_pct "26.9"; chr22 rmsk exon 34668457 34669229 2318 - . gene_id "ERVLE_22q12.3b"; transcript_id "ERVLE_22q12.3b"; locus "ERVLE_22q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3578"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "3765"; repStart "-1131"; chr22 rmsk exon 34669668 34670215 776 - . gene_id "ERVLE_22q12.3b"; transcript_id "ERVLE_22q12.3b"; locus "ERVLE_22q12.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3578"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "2682"; repStart "-2234"; ### ERV316A3_22q12.3b ### chr22 rmsk gene 34673100 34675939 . + . gene_id "ERV316A3_22q12.3b"; transcript_id "ERV316A3_22q12.3b"; locus "ERV316A3_22q12.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2739"; model_cov "2268"; model_pct "43.4"; chr22 rmsk exon 34673100 34673957 5900 + . gene_id "ERV316A3_22q12.3b"; transcript_id "ERV316A3_22q12.3b"; locus "ERV316A3_22q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2739"; repClass "LTR"; repEnd "3874"; repFamily "ERVL"; repLeft "-1352"; repStart "2957"; chr22 rmsk exon 34674246 34675580 5900 + . gene_id "ERV316A3_22q12.3b"; transcript_id "ERV316A3_22q12.3b"; locus "ERV316A3_22q12.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2739"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3875"; chr22 rmsk exon 34675581 34675939 469 + . gene_id "ERV316A3_22q12.3b"; transcript_id "ERV316A3_22q12.3b"; locus "ERV316A3_22q12.3b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2739"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-22"; repStart "1"; ### ERVLE_22q12.3c ### chr22 rmsk gene 34710854 34712244 . + . gene_id "ERVLE_22q12.3c"; transcript_id "ERVLE_22q12.3c"; locus "ERVLE_22q12.3c"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3579"; model_cov "895"; model_pct "15.8"; chr22 rmsk exon 34710854 34711598 2940 + . gene_id "ERVLE_22q12.3c"; transcript_id "ERVLE_22q12.3c"; locus "ERVLE_22q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3579"; repClass "LTR"; repEnd "5319"; repFamily "ERVL"; repLeft "-348"; repStart "4544"; chr22 rmsk exon 34711572 34711693 342 + . gene_id "ERVLE_22q12.3c"; transcript_id "ERVLE_22q12.3c"; locus "ERVLE_22q12.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3579"; repClass "LTR"; repEnd "5662"; repFamily "ERVL"; repLeft "-5"; repStart "5542"; chr22 rmsk exon 34711699 34712244 863 + . gene_id "ERVLE_22q12.3c"; transcript_id "ERVLE_22q12.3c"; locus "ERVLE_22q12.3c"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3579"; repClass "LTR"; repEnd "657"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### ERVL_22q12.3a ### chr22 rmsk gene 34733522 34735322 . - . gene_id "ERVL_22q12.3a"; transcript_id "ERVL_22q12.3a"; locus "ERVL_22q12.3a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0455"; model_cov "1157"; model_pct "20.1"; chr22 rmsk exon 34733522 34733784 607 - . gene_id "ERVL_22q12.3a"; transcript_id "ERVL_22q12.3a"; locus "ERVL_22q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0455"; repClass "LTR"; repEnd "5372"; repFamily "ERVL"; repLeft "5096"; repStart "-385"; chr22 rmsk exon 34734474 34735322 1299 - . gene_id "ERVL_22q12.3a"; transcript_id "ERVL_22q12.3a"; locus "ERVL_22q12.3a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0455"; repClass "LTR"; repEnd "5070"; repFamily "ERVL"; repLeft "4189"; repStart "-687"; ### ERVLE_22q12.3d ### chr22 rmsk gene 34735427 34739304 . - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3580"; model_cov "1665"; model_pct "29.4"; chr22 rmsk exon 34735427 34735996 1683 - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3580"; repClass "LTR"; repEnd "2807"; repFamily "ERVL"; repLeft "2200"; repStart "-2860"; chr22 rmsk exon 34736023 34736106 250 - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3580"; repClass "LTR"; repEnd "2229"; repFamily "ERVL"; repLeft "2146"; repStart "-3438"; chr22 rmsk exon 34736737 34737485 1518 - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3580"; repClass "LTR"; repEnd "2051"; repFamily "ERVL"; repLeft "1307"; repStart "-3616"; chr22 rmsk exon 34738645 34738762 318 - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3580"; repClass "LTR"; repEnd "853"; repFamily "ERVL"; repLeft "734"; repStart "-4814"; chr22 rmsk exon 34739193 34739304 311 - . gene_id "ERVLE_22q12.3d"; transcript_id "ERVLE_22q12.3d"; locus "ERVLE_22q12.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3580"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "111"; repStart "-5444"; ### ERV316A3_22q12.3c ### chr22 rmsk gene 34828975 34830231 . - . gene_id "ERV316A3_22q12.3c"; transcript_id "ERV316A3_22q12.3c"; locus "ERV316A3_22q12.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2740"; model_cov "1316"; model_pct "25.2"; chr22 rmsk exon 34828975 34830231 2851 - . gene_id "ERV316A3_22q12.3c"; transcript_id "ERV316A3_22q12.3c"; locus "ERV316A3_22q12.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2740"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "3803"; repStart "-107"; ### HERVH_22q12.3b ### chr22 rmsk gene 34834608 34840024 . + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1213"; model_cov "4575"; model_pct "59.3"; chr22 rmsk exon 34834608 34835022 2674 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr22 rmsk exon 34835025 34835492 3099 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chr22 rmsk exon 34835551 34837731 14938 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "800"; chr22 rmsk exon 34837711 34837860 1001 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr22 rmsk exon 34837851 34838355 3306 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chr22 rmsk exon 34838358 34839018 4734 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr22 rmsk exon 34839020 34839234 1421 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr22 rmsk exon 34839233 34839608 2389 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr22 rmsk exon 34839609 34840024 2679 + . gene_id "HERVH_22q12.3b"; transcript_id "HERVH_22q12.3b"; locus "HERVH_22q12.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1213"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVFRD_22q12.3 ### chr22 rmsk gene 35368801 35370634 . + . gene_id "HERVFRD_22q12.3"; transcript_id "HERVFRD_22q12.3"; locus "HERVFRD_22q12.3"; category "internal"; intModel "MER50-int"; locid "MER50-int_0185"; model_cov "1372"; model_pct "19.0"; chr22 rmsk exon 35368801 35369033 5049 + . gene_id "HERVFRD_22q12.3"; transcript_id "HERVFRD_22q12.3"; locus "HERVFRD_22q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0185"; repClass "LTR"; repEnd "1185"; repFamily "ERV1"; repLeft "-6020"; repStart "954"; chr22 rmsk exon 35369345 35370014 5049 + . gene_id "HERVFRD_22q12.3"; transcript_id "HERVFRD_22q12.3"; locus "HERVFRD_22q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0185"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "-5356"; repStart "1186"; chr22 rmsk exon 35370010 35370634 2942 + . gene_id "HERVFRD_22q12.3"; transcript_id "HERVFRD_22q12.3"; locus "HERVFRD_22q12.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0185"; repClass "LTR"; repEnd "3806"; repFamily "ERV1"; repLeft "-3399"; repStart "3328"; ### MER4_22q12.3 ### chr22 rmsk gene 35662326 35668403 . + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0795"; model_cov "5948"; model_pct "90.1"; chr22 rmsk exon 35662326 35662742 2834 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0795"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 35662746 35663134 1975 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0795"; repClass "LTR"; repEnd "-1166"; repFamily "ERV1"; repLeft "-7764"; repStart "-1671"; chr22 rmsk exon 35663123 35663633 1127 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0795"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "507"; chr22 rmsk exon 35663672 35664338 4474 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0795"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1803"; chr22 rmsk exon 35664582 35666273 11427 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0795"; repClass "LTR"; repEnd "5060"; repFamily "ERV1"; repLeft "-1538"; repStart "1862"; chr22 rmsk exon 35666574 35667325 11427 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0795"; repClass "LTR"; repEnd "5853"; repFamily "ERV1"; repLeft "-745"; repStart "5061"; chr22 rmsk exon 35667863 35668403 3309 + . gene_id "MER4_22q12.3"; transcript_id "MER4_22q12.3"; locus "MER4_22q12.3"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0795"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "11"; ### MER41_22q12.3c ### chr22 rmsk gene 35668700 35673866 . + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0550"; model_cov "6107"; model_pct "100.0"; chr22 rmsk exon 35668700 35669241 4029 + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0550"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 35669328 35669959 4330 + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0550"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-5311"; repStart "1"; chr22 rmsk exon 35669949 35670953 11082 + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0550"; repClass "LTR"; repEnd "3869"; repFamily "ERV1"; repLeft "-2077"; repStart "2348"; chr22 rmsk exon 35671259 35673443 12847 + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0550"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "1992"; chr22 rmsk exon 35673444 35673866 4149 + . gene_id "MER41_22q12.3c"; transcript_id "MER41_22q12.3c"; locus "MER41_22q12.3c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0550"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-130"; repStart "1"; ### ERVL_22q12.3b ### chr22 rmsk gene 36135027 36136798 . + . gene_id "ERVL_22q12.3b"; transcript_id "ERVL_22q12.3b"; locus "ERVL_22q12.3b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0456"; model_cov "612"; model_pct "10.6"; chr22 rmsk exon 36135027 36135116 300 + . gene_id "ERVL_22q12.3b"; transcript_id "ERVL_22q12.3b"; locus "ERVL_22q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0456"; repClass "LTR"; repEnd "2486"; repFamily "ERVL"; repLeft "-3271"; repStart "2396"; chr22 rmsk exon 36136085 36136335 527 + . gene_id "ERVL_22q12.3b"; transcript_id "ERVL_22q12.3b"; locus "ERVL_22q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0456"; repClass "LTR"; repEnd "4059"; repFamily "ERVL"; repLeft "-1698"; repStart "3710"; chr22 rmsk exon 36136636 36136798 527 + . gene_id "ERVL_22q12.3b"; transcript_id "ERVL_22q12.3b"; locus "ERVL_22q12.3b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0456"; repClass "LTR"; repEnd "4233"; repFamily "ERVL"; repLeft "-1524"; repStart "4060"; ### LTR57_22q12.3 ### chr22 rmsk gene 36179880 36181488 . - . gene_id "LTR57_22q12.3"; transcript_id "LTR57_22q12.3"; locus "LTR57_22q12.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0187"; model_cov "1756"; model_pct "32.9"; chr22 rmsk exon 36179880 36181488 4701 - . gene_id "LTR57_22q12.3"; transcript_id "LTR57_22q12.3"; locus "LTR57_22q12.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0187"; repClass "LTR"; repEnd "4196"; repFamily "ERVL"; repLeft "2440"; repStart "-1147"; ### ERVLB4_22q12.3 ### chr22 rmsk gene 36183602 36184275 . + . gene_id "ERVLB4_22q12.3"; transcript_id "ERVLB4_22q12.3"; locus "ERVLB4_22q12.3"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1755"; model_cov "697"; model_pct "12.2"; chr22 rmsk exon 36183602 36184062 514 + . gene_id "ERVLB4_22q12.3"; transcript_id "ERVLB4_22q12.3"; locus "ERVLB4_22q12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1755"; repClass "LTR"; repEnd "2151"; repFamily "ERVL"; repLeft "-3563"; repStart "1614"; chr22 rmsk exon 36184117 36184275 365 + . gene_id "ERVLB4_22q12.3"; transcript_id "ERVLB4_22q12.3"; locus "ERVLB4_22q12.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1755"; repClass "LTR"; repEnd "2443"; repFamily "ERVL"; repLeft "-3271"; repStart "2283"; ### MER41_22q12.3d ### chr22 rmsk gene 36216030 36217510 . + . gene_id "MER41_22q12.3d"; transcript_id "MER41_22q12.3d"; locus "MER41_22q12.3d"; category "internal"; intModel "MER41-int"; locid "MER41-int_0552"; model_cov "946"; model_pct "15.9"; chr22 rmsk exon 36216030 36216282 1021 + . gene_id "MER41_22q12.3d"; transcript_id "MER41_22q12.3d"; locus "MER41_22q12.3d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0552"; repClass "LTR"; repEnd "-121"; repFamily "ERV1"; repLeft "-6067"; repStart "-365"; chr22 rmsk exon 36216283 36216339 269 + . gene_id "MER41_22q12.3d"; transcript_id "MER41_22q12.3d"; locus "MER41_22q12.3d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0552"; repClass "LTR"; repEnd "571"; repFamily "ERV1"; repLeft "-5375"; repStart "516"; chr22 rmsk exon 36216813 36217510 1570 + . gene_id "MER41_22q12.3d"; transcript_id "MER41_22q12.3d"; locus "MER41_22q12.3d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0552"; repClass "LTR"; repEnd "2309"; repFamily "ERV1"; repLeft "-3637"; repStart "1662"; ### ERVLE_22q12.3e ### chr22 rmsk gene 36971692 36973150 . - . gene_id "ERVLE_22q12.3e"; transcript_id "ERVLE_22q12.3e"; locus "ERVLE_22q12.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3584"; model_cov "1252"; model_pct "22.1"; chr22 rmsk exon 36971692 36972484 1364 - . gene_id "ERVLE_22q12.3e"; transcript_id "ERVLE_22q12.3e"; locus "ERVLE_22q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3584"; repClass "LTR"; repEnd "1298"; repFamily "ERVL"; repLeft "466"; repStart "-4369"; chr22 rmsk exon 36972721 36973150 1364 - . gene_id "ERVLE_22q12.3e"; transcript_id "ERVLE_22q12.3e"; locus "ERVLE_22q12.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3584"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "45"; repStart "-5202"; ### MER41_22q12.3e ### chr22 rmsk gene 37188838 37196108 . - . gene_id "MER41_22q12.3e"; transcript_id "MER41_22q12.3e"; locus "MER41_22q12.3e"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0554"; model_cov "5551"; model_pct "93.4"; chr22 rmsk exon 37188838 37189480 4069 - . gene_id "MER41_22q12.3e"; transcript_id "MER41_22q12.3e"; locus "MER41_22q12.3e"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0554"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr22 rmsk exon 37189940 37195467 33130 - . gene_id "MER41_22q12.3e"; transcript_id "MER41_22q12.3e"; locus "MER41_22q12.3e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0554"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "395"; repStart "0"; chr22 rmsk exon 37195469 37196108 4370 - . gene_id "MER41_22q12.3e"; transcript_id "MER41_22q12.3e"; locus "MER41_22q12.3e"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0554"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_22q13.1 ### chr22 rmsk gene 37287909 37290999 . - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2741"; model_cov "1871"; model_pct "35.8"; chr22 rmsk exon 37287909 37287996 1427 - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2741"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "4568"; repStart "-569"; chr22 rmsk exon 37288602 37289173 1427 - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2741"; repClass "LTR"; repEnd "4567"; repFamily "ERVL"; repLeft "4016"; repStart "-659"; chr22 rmsk exon 37289173 37289846 1458 - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2741"; repClass "LTR"; repEnd "3438"; repFamily "ERVL"; repLeft "2719"; repStart "-1788"; chr22 rmsk exon 37289873 37290494 1178 - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2741"; repClass "LTR"; repEnd "2219"; repFamily "ERVL"; repLeft "1707"; repStart "-3007"; chr22 rmsk exon 37290821 37290999 538 - . gene_id "ERV316A3_22q13.1"; transcript_id "ERV316A3_22q13.1"; locus "ERV316A3_22q13.1"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2741"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "1"; repStart "-245"; ### MER101_22q13.1 ### chr22 rmsk gene 38903544 38905275 . + . gene_id "MER101_22q13.1"; transcript_id "MER101_22q13.1"; locus "MER101_22q13.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0416"; model_cov "1254"; model_pct "18.9"; chr22 rmsk exon 38903544 38904294 1905 + . gene_id "MER101_22q13.1"; transcript_id "MER101_22q13.1"; locus "MER101_22q13.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0416"; repClass "LTR"; repEnd "3337"; repFamily "ERV1"; repLeft "-3302"; repStart "3021"; chr22 rmsk exon 38904587 38905275 2901 + . gene_id "MER101_22q13.1"; transcript_id "MER101_22q13.1"; locus "MER101_22q13.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0416"; repClass "LTR"; repEnd "3777"; repFamily "ERV1"; repLeft "-2862"; repStart "2839"; ### ERVLE_22q13.1a ### chr22 rmsk gene 38914868 38916192 . - . gene_id "ERVLE_22q13.1a"; transcript_id "ERVLE_22q13.1a"; locus "ERVLE_22q13.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3585"; model_cov "1060"; model_pct "18.7"; chr22 rmsk exon 38914868 38914927 3223 - . gene_id "ERVLE_22q13.1a"; transcript_id "ERVLE_22q13.1a"; locus "ERVLE_22q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3585"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5596"; repStart "-1"; chr22 rmsk exon 38915222 38916192 3223 - . gene_id "ERVLE_22q13.1a"; transcript_id "ERVLE_22q13.1a"; locus "ERVLE_22q13.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3585"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "4605"; repStart "-72"; ### HERVH_22q13.1a ### chr22 rmsk gene 39056262 39062970 . - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1214"; model_cov "6570"; model_pct "85.2"; chr22 rmsk exon 39056262 39056684 2775 - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1214"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr22 rmsk exon 39056685 39057005 3376 - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1214"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7404"; repStart "0"; chr22 rmsk exon 39057312 39057559 3376 - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1214"; repClass "LTR"; repEnd "7403"; repFamily "ERV1"; repLeft "7157"; repStart "-310"; chr22 rmsk exon 39057553 39062558 20137 - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1214"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "1"; repStart "-1697"; chr22 rmsk exon 39062560 39062970 2588 - . gene_id "HERVH_22q13.1a"; transcript_id "HERVH_22q13.1a"; locus "HERVH_22q13.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1214"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "8"; repStart "-1"; ### HERVH_22q13.1b ### chr22 rmsk gene 39066094 39068308 . - . gene_id "HERVH_22q13.1b"; transcript_id "HERVH_22q13.1b"; locus "HERVH_22q13.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1215"; model_cov "1570"; model_pct "20.4"; chr22 rmsk exon 39066094 39066470 1846 - . gene_id "HERVH_22q13.1b"; transcript_id "HERVH_22q13.1b"; locus "HERVH_22q13.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1215"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr22 rmsk exon 39066471 39066654 924 - . gene_id "HERVH_22q13.1b"; transcript_id "HERVH_22q13.1b"; locus "HERVH_22q13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1215"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7519"; repStart "0"; chr22 rmsk exon 39066652 39068041 7988 - . gene_id "HERVH_22q13.1b"; transcript_id "HERVH_22q13.1b"; locus "HERVH_22q13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1215"; repClass "LTR"; repEnd "3936"; repFamily "ERV1"; repLeft "2560"; repStart "-3777"; chr22 rmsk exon 39068042 39068308 1128 - . gene_id "HERVH_22q13.1b"; transcript_id "HERVH_22q13.1b"; locus "HERVH_22q13.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1215"; repClass "LTR"; repEnd "344"; repFamily "ERV1"; repLeft "1"; repStart "-106"; ### ERVLE_22q13.1b ### chr22 rmsk gene 39809636 39812775 . + . gene_id "ERVLE_22q13.1b"; transcript_id "ERVLE_22q13.1b"; locus "ERVLE_22q13.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3587"; model_cov "3072"; model_pct "54.2"; chr22 rmsk exon 39809636 39811697 4156 + . gene_id "ERVLE_22q13.1b"; transcript_id "ERVLE_22q13.1b"; locus "ERVLE_22q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3587"; repClass "LTR"; repEnd "3421"; repFamily "ERVL"; repLeft "-2246"; repStart "1260"; chr22 rmsk exon 39812007 39812775 4156 + . gene_id "ERVLE_22q13.1b"; transcript_id "ERVLE_22q13.1b"; locus "ERVLE_22q13.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3587"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "-1334"; repStart "3422"; ### ERVLE_22q13.2a ### chr22 rmsk gene 40658587 40659544 . - . gene_id "ERVLE_22q13.2a"; transcript_id "ERVLE_22q13.2a"; locus "ERVLE_22q13.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3589"; model_cov "636"; model_pct "11.2"; chr22 rmsk exon 40658587 40658624 877 - . gene_id "ERVLE_22q13.2a"; transcript_id "ERVLE_22q13.2a"; locus "ERVLE_22q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3589"; repClass "LTR"; repEnd "3223"; repFamily "ERVL"; repLeft "3188"; repStart "-2444"; chr22 rmsk exon 40658933 40659544 1516 - . gene_id "ERVLE_22q13.2a"; transcript_id "ERVLE_22q13.2a"; locus "ERVLE_22q13.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3589"; repClass "LTR"; repEnd "3187"; repFamily "ERVL"; repLeft "2586"; repStart "-2480"; ### ERVLE_22q13.2b ### chr22 rmsk gene 40660838 40661423 . + . gene_id "ERVLE_22q13.2b"; transcript_id "ERVLE_22q13.2b"; locus "ERVLE_22q13.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3590"; model_cov "608"; model_pct "10.7"; chr22 rmsk exon 40660838 40661423 1406 + . gene_id "ERVLE_22q13.2b"; transcript_id "ERVLE_22q13.2b"; locus "ERVLE_22q13.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3590"; repClass "LTR"; repEnd "1873"; repFamily "ERVL"; repLeft "-3794"; repStart "1265"; ### ERVLB4_22q13.2 ### chr22 rmsk gene 40661900 40664220 . + . gene_id "ERVLB4_22q13.2"; transcript_id "ERVLB4_22q13.2"; locus "ERVLB4_22q13.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1757"; model_cov "1098"; model_pct "19.2"; chr22 rmsk exon 40661900 40662762 5945 + . gene_id "ERVLB4_22q13.2"; transcript_id "ERVLB4_22q13.2"; locus "ERVLB4_22q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1757"; repClass "LTR"; repEnd "4650"; repFamily "ERVL"; repLeft "-1064"; repStart "3786"; chr22 rmsk exon 40663886 40664116 1388 + . gene_id "ERVLB4_22q13.2"; transcript_id "ERVLB4_22q13.2"; locus "ERVLB4_22q13.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1757"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5480"; chr22 rmsk exon 40664121 40664220 2351 + . gene_id "ERVLB4_22q13.2"; transcript_id "ERVLB4_22q13.2"; locus "ERVLB4_22q13.2"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1757"; repClass "LTR"; repEnd "104"; repFamily "ERVL"; repLeft "-450"; repStart "5"; ### ERVLE_22q13.2c ### chr22 rmsk gene 41026681 41029740 . + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3591"; model_cov "1649"; model_pct "29.1"; chr22 rmsk exon 41026681 41027131 3788 + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3591"; repClass "LTR"; repEnd "4135"; repFamily "ERVL"; repLeft "-1532"; repStart "3631"; chr22 rmsk exon 41027425 41027740 3788 + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3591"; repClass "LTR"; repEnd "4433"; repFamily "ERVL"; repLeft "-1234"; repStart "4136"; chr22 rmsk exon 41028041 41028051 3788 + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3591"; repClass "LTR"; repEnd "4434"; repFamily "ERVL"; repLeft "-1233"; repStart "4434"; chr22 rmsk exon 41028636 41029315 3788 + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3591"; repClass "LTR"; repEnd "5175"; repFamily "ERVL"; repLeft "-492"; repStart "4434"; chr22 rmsk exon 41029627 41029740 3788 + . gene_id "ERVLE_22q13.2c"; transcript_id "ERVLE_22q13.2c"; locus "ERVLE_22q13.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3591"; repClass "LTR"; repEnd "5283"; repFamily "ERVL"; repLeft "-384"; repStart "5176"; ### ERVLE_22q13.2d ### chr22 rmsk gene 41029765 41032076 . - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3592"; model_cov "1186"; model_pct "20.9"; chr22 rmsk exon 41029765 41029825 277 - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3592"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "4476"; repStart "-1131"; chr22 rmsk exon 41029795 41030043 489 - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3592"; repClass "LTR"; repEnd "3389"; repFamily "ERVL"; repLeft "3141"; repStart "-2278"; chr22 rmsk exon 41030040 41030086 273 - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3592"; repClass "LTR"; repEnd "1830"; repFamily "ERVL"; repLeft "1785"; repStart "-3837"; chr22 rmsk exon 41030164 41030598 739 - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3592"; repClass "LTR"; repEnd "1533"; repFamily "ERVL"; repLeft "1078"; repStart "-4134"; chr22 rmsk exon 41031714 41032076 447 - . gene_id "ERVLE_22q13.2d"; transcript_id "ERVLE_22q13.2d"; locus "ERVLE_22q13.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3592"; repClass "LTR"; repEnd "693"; repFamily "ERVL"; repLeft "315"; repStart "-4974"; ### ERVLE_22q13.2e ### chr22 rmsk gene 41708236 41711531 . - . gene_id "ERVLE_22q13.2e"; transcript_id "ERVLE_22q13.2e"; locus "ERVLE_22q13.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3593"; model_cov "1574"; model_pct "27.8"; chr22 rmsk exon 41708236 41708400 678 - . gene_id "ERVLE_22q13.2e"; transcript_id "ERVLE_22q13.2e"; locus "ERVLE_22q13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3593"; repClass "LTR"; repEnd "5292"; repFamily "ERVL"; repLeft "5128"; repStart "-375"; chr22 rmsk exon 41709579 41709946 3277 - . gene_id "ERVLE_22q13.2e"; transcript_id "ERVLE_22q13.2e"; locus "ERVLE_22q13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3593"; repClass "LTR"; repEnd "5132"; repFamily "ERVL"; repLeft "4757"; repStart "-535"; chr22 rmsk exon 41710365 41711168 3277 - . gene_id "ERVLE_22q13.2e"; transcript_id "ERVLE_22q13.2e"; locus "ERVLE_22q13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3593"; repClass "LTR"; repEnd "4756"; repFamily "ERVL"; repLeft "3837"; repStart "-911"; chr22 rmsk exon 41711415 41711531 568 - . gene_id "ERVLE_22q13.2e"; transcript_id "ERVLE_22q13.2e"; locus "ERVLE_22q13.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3593"; repClass "LTR"; repEnd "3701"; repFamily "ERVL"; repLeft "3585"; repStart "-1966"; ### HERVL40_22q13.2 ### chr22 rmsk gene 41814715 41818857 . - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0456"; model_cov "1792"; model_pct "32.4"; chr22 rmsk exon 41814715 41815145 1385 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "-5"; chr22 rmsk exon 41815511 41815652 1925 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "5491"; repFamily "ERVL"; repLeft "5340"; repStart "-39"; chr22 rmsk exon 41815950 41816205 1925 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "5339"; repFamily "ERVL"; repLeft "5076"; repStart "-191"; chr22 rmsk exon 41816235 41816674 3075 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "5010"; repFamily "ERVL"; repLeft "4545"; repStart "-520"; chr22 rmsk exon 41816938 41817204 3075 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "4280"; repStart "-986"; chr22 rmsk exon 41817186 41817452 2080 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "3549"; repFamily "ERVL"; repLeft "3292"; repStart "-1981"; chr22 rmsk exon 41817771 41817993 2080 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "3291"; repFamily "ERVL"; repLeft "3068"; repStart "-2239"; chr22 rmsk exon 41818544 41818716 2080 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "3067"; repFamily "ERVL"; repLeft "2898"; repStart "-2463"; chr22 rmsk exon 41818717 41818857 531 - . gene_id "HERVL40_22q13.2"; transcript_id "HERVL40_22q13.2"; locus "HERVL40_22q13.2"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0456"; repClass "LTR"; repEnd "138"; repFamily "ERVL"; repLeft "1"; repStart "-327"; ### HERVIP10F_22q13.2 ### chr22 rmsk gene 42104469 42112914 . - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0123"; model_cov "5891"; model_pct "76.1"; chr22 rmsk exon 42104469 42104953 2718 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-25"; chr22 rmsk exon 42104954 42107338 9191 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5369"; repStart "0"; chr22 rmsk exon 42109106 42110035 18634 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "5296"; repFamily "ERV1"; repLeft "4361"; repStart "-2441"; chr22 rmsk exon 42110345 42112737 18634 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "4360"; repFamily "ERV1"; repLeft "1946"; repStart "-3377"; chr22 rmsk exon 42112738 42112796 384 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22 rmsk exon 42112797 42112855 379 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22 rmsk exon 42112856 42112914 384 - . gene_id "HERVIP10F_22q13.2"; transcript_id "HERVIP10F_22q13.2"; locus "HERVIP10F_22q13.2"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0123"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; ### HERVI_22q13.2 ### chr22 rmsk gene 42112920 42115918 . - . gene_id "HERVI_22q13.2"; transcript_id "HERVI_22q13.2"; locus "HERVI_22q13.2"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0040"; model_cov "2161"; model_pct "27.8"; chr22 rmsk exon 42112920 42113515 10615 - . gene_id "HERVI_22q13.2"; transcript_id "HERVI_22q13.2"; locus "HERVI_22q13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0040"; repClass "LTR"; repEnd "2163"; repFamily "ERV1"; repLeft "1561"; repStart "-5622"; chr22 rmsk exon 42113834 42115422 10615 - . gene_id "HERVI_22q13.2"; transcript_id "HERVI_22q13.2"; locus "HERVI_22q13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0040"; repClass "LTR"; repEnd "1560"; repFamily "ERV1"; repLeft "1"; repStart "-6225"; chr22 rmsk exon 42115426 42115918 2652 - . gene_id "HERVI_22q13.2"; transcript_id "HERVI_22q13.2"; locus "HERVI_22q13.2"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0040"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-20"; ### ERVLE_22q13.2f ### chr22 rmsk gene 42680611 42682407 . + . gene_id "ERVLE_22q13.2f"; transcript_id "ERVLE_22q13.2f"; locus "ERVLE_22q13.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3594"; model_cov "735"; model_pct "13.0"; chr22 rmsk exon 42680611 42680977 820 + . gene_id "ERVLE_22q13.2f"; transcript_id "ERVLE_22q13.2f"; locus "ERVLE_22q13.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3594"; repClass "LTR"; repEnd "4904"; repFamily "ERVL"; repLeft "-763"; repStart "4349"; chr22 rmsk exon 42682224 42682407 412 + . gene_id "ERVLE_22q13.2f"; transcript_id "ERVLE_22q13.2f"; locus "ERVLE_22q13.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3594"; repClass "LTR"; repEnd "5600"; repFamily "ERVL"; repLeft "-67"; repStart "5420"; ### ERVL_22q13.2 ### chr22 rmsk gene 43512210 43514583 . - . gene_id "ERVL_22q13.2"; transcript_id "ERVL_22q13.2"; locus "ERVL_22q13.2"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0460"; model_cov "633"; model_pct "11.0"; chr22 rmsk exon 43512210 43512737 470 - . gene_id "ERVL_22q13.2"; transcript_id "ERVL_22q13.2"; locus "ERVL_22q13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0460"; repClass "LTR"; repEnd "5329"; repFamily "ERVL"; repLeft "4777"; repStart "-428"; chr22 rmsk exon 43514501 43514583 264 - . gene_id "ERVL_22q13.2"; transcript_id "ERVL_22q13.2"; locus "ERVL_22q13.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0460"; repClass "LTR"; repEnd "2273"; repFamily "ERVL"; repLeft "2192"; repStart "-3484"; ### ERVLE_22q13.2g ### chr22 rmsk gene 43698073 43698692 . + . gene_id "ERVLE_22q13.2g"; transcript_id "ERVLE_22q13.2g"; locus "ERVLE_22q13.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3596"; model_cov "630"; model_pct "11.1"; chr22 rmsk exon 43698073 43698692 1444 + . gene_id "ERVLE_22q13.2g"; transcript_id "ERVLE_22q13.2g"; locus "ERVLE_22q13.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3596"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1035"; repStart "4002"; ### ERVLE_22q13.31a ### chr22 rmsk gene 44179209 44179744 . - . gene_id "ERVLE_22q13.31a"; transcript_id "ERVLE_22q13.31a"; locus "ERVLE_22q13.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3597"; model_cov "568"; model_pct "10.0"; chr22 rmsk exon 44179209 44179744 1078 - . gene_id "ERVLE_22q13.31a"; transcript_id "ERVLE_22q13.31a"; locus "ERVLE_22q13.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3597"; repClass "LTR"; repEnd "573"; repFamily "ERVL"; repLeft "5"; repStart "-5094"; ### ERVLE_22q13.31b ### chr22 rmsk gene 44554515 44555336 . - . gene_id "ERVLE_22q13.31b"; transcript_id "ERVLE_22q13.31b"; locus "ERVLE_22q13.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3599"; model_cov "928"; model_pct "16.4"; chr22 rmsk exon 44554515 44555336 2340 - . gene_id "ERVLE_22q13.31b"; transcript_id "ERVLE_22q13.31b"; locus "ERVLE_22q13.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3599"; repClass "LTR"; repEnd "882"; repFamily "ERVL"; repLeft "-46"; repStart "-4785"; ### MER34B_22q13.31 ### chr22 rmsk gene 44852585 44854182 . - . gene_id "MER34B_22q13.31"; transcript_id "MER34B_22q13.31"; locus "MER34B_22q13.31"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0274"; model_cov "1007"; model_pct "18.8"; chr22 rmsk exon 44852585 44852792 1966 - . gene_id "MER34B_22q13.31"; transcript_id "MER34B_22q13.31"; locus "MER34B_22q13.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0274"; repClass "LTR"; repEnd "5202"; repFamily "ERV1"; repLeft "4985"; repStart "-154"; chr22 rmsk exon 44853102 44853745 1966 - . gene_id "MER34B_22q13.31"; transcript_id "MER34B_22q13.31"; locus "MER34B_22q13.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0274"; repClass "LTR"; repEnd "4984"; repFamily "ERV1"; repLeft "4314"; repStart "-372"; chr22 rmsk exon 44854055 44854182 1966 - . gene_id "MER34B_22q13.31"; transcript_id "MER34B_22q13.31"; locus "MER34B_22q13.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0274"; repClass "LTR"; repEnd "4313"; repFamily "ERV1"; repLeft "4193"; repStart "-1043"; ### ERVLB4_22q13.31a ### chr22 rmsk gene 45127991 45128609 . + . gene_id "ERVLB4_22q13.31a"; transcript_id "ERVLB4_22q13.31a"; locus "ERVLB4_22q13.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1759"; model_cov "638"; model_pct "11.2"; chr22 rmsk exon 45127991 45128609 3909 + . gene_id "ERVLB4_22q13.31a"; transcript_id "ERVLB4_22q13.31a"; locus "ERVLB4_22q13.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1759"; repClass "LTR"; repEnd "5358"; repFamily "ERVL"; repLeft "-356"; repStart "4720"; ### MER4_22q13.31a ### chr22 rmsk gene 45373012 45375490 . + . gene_id "MER4_22q13.31a"; transcript_id "MER4_22q13.31a"; locus "MER4_22q13.31a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0796"; model_cov "1264"; model_pct "19.2"; chr22 rmsk exon 45373012 45373326 1611 + . gene_id "MER4_22q13.31a"; transcript_id "MER4_22q13.31a"; locus "MER4_22q13.31a"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0796"; repClass "LTR"; repEnd "579"; repFamily "ERV1"; repLeft "-31"; repStart "29"; chr22 rmsk exon 45373766 45374378 3260 + . gene_id "MER4_22q13.31a"; transcript_id "MER4_22q13.31a"; locus "MER4_22q13.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0796"; repClass "LTR"; repEnd "3384"; repFamily "ERV1"; repLeft "-3214"; repStart "2737"; chr22 rmsk exon 45374368 45375008 3662 + . gene_id "MER4_22q13.31a"; transcript_id "MER4_22q13.31a"; locus "MER4_22q13.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0796"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5979"; chr22 rmsk exon 45375017 45375490 3856 + . gene_id "MER4_22q13.31a"; transcript_id "MER4_22q13.31a"; locus "MER4_22q13.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0796"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_22q13.31 ### chr22 rmsk gene 45555207 45562120 . - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1266"; model_cov "5652"; model_pct "100.0"; chr22 rmsk exon 45555207 45555257 315 - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1266"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "390"; repStart "0"; chr22 rmsk exon 45555285 45555711 2888 - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1266"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; chr22 rmsk exon 45555712 45555983 9493 - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1266"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5381"; repStart "0"; chr22 rmsk exon 45556296 45561682 44232 - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1266"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "1"; repStart "-274"; chr22 rmsk exon 45561683 45562120 3671 - . gene_id "HERVL_22q13.31"; transcript_id "HERVL_22q13.31"; locus "HERVL_22q13.31"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1266"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERV316A3_22q13.31a ### chr22 rmsk gene 45650661 45652489 . - . gene_id "ERV316A3_22q13.31a"; transcript_id "ERV316A3_22q13.31a"; locus "ERV316A3_22q13.31a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2743"; model_cov "850"; model_pct "16.3"; chr22 rmsk exon 45650661 45650776 419 - . gene_id "ERV316A3_22q13.31a"; transcript_id "ERV316A3_22q13.31a"; locus "ERV316A3_22q13.31a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2743"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "313"; repStart "-1"; chr22 rmsk exon 45650791 45650923 491 - . gene_id "ERV316A3_22q13.31a"; transcript_id "ERV316A3_22q13.31a"; locus "ERV316A3_22q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2743"; repClass "LTR"; repEnd "4002"; repFamily "ERVL"; repLeft "3869"; repStart "-1224"; chr22 rmsk exon 45651083 45651286 994 - . gene_id "ERV316A3_22q13.31a"; transcript_id "ERV316A3_22q13.31a"; locus "ERV316A3_22q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2743"; repClass "LTR"; repEnd "3362"; repFamily "ERVL"; repLeft "3016"; repStart "-1864"; chr22 rmsk exon 45652132 45652489 994 - . gene_id "ERV316A3_22q13.31a"; transcript_id "ERV316A3_22q13.31a"; locus "ERV316A3_22q13.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2743"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "2782"; repStart "-2073"; ### ERVLB4_22q13.31b ### chr22 rmsk gene 45855129 45859216 . - . gene_id "ERVLB4_22q13.31b"; transcript_id "ERVLB4_22q13.31b"; locus "ERVLB4_22q13.31b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1760"; model_cov "3558"; model_pct "62.3"; chr22 rmsk exon 45855129 45855559 1410 - . gene_id "ERVLB4_22q13.31b"; transcript_id "ERVLB4_22q13.31b"; locus "ERVLB4_22q13.31b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1760"; repClass "LTR"; repEnd "506"; repFamily "ERVL"; repLeft "-46"; repStart "-14"; chr22 rmsk exon 45855560 45855957 1899 - . gene_id "ERVLB4_22q13.31b"; transcript_id "ERVLB4_22q13.31b"; locus "ERVLB4_22q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1760"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5313"; repStart "0"; chr22 rmsk exon 45855956 45858440 14271 - . gene_id "ERVLB4_22q13.31b"; transcript_id "ERVLB4_22q13.31b"; locus "ERVLB4_22q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1760"; repClass "LTR"; repEnd "4399"; repFamily "ERVL"; repLeft "1874"; repStart "-1315"; chr22 rmsk exon 45858598 45859216 3138 - . gene_id "ERVLB4_22q13.31b"; transcript_id "ERVLB4_22q13.31b"; locus "ERVLB4_22q13.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1760"; repClass "LTR"; repEnd "1854"; repFamily "ERVL"; repLeft "1222"; repStart "-3860"; ### ERV316A3_22q13.31b ### chr22 rmsk gene 46020980 46022195 . + . gene_id "ERV316A3_22q13.31b"; transcript_id "ERV316A3_22q13.31b"; locus "ERV316A3_22q13.31b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2744"; model_cov "663"; model_pct "12.7"; chr22 rmsk exon 46020980 46021581 731 + . gene_id "ERV316A3_22q13.31b"; transcript_id "ERV316A3_22q13.31b"; locus "ERV316A3_22q13.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2744"; repClass "LTR"; repEnd "5129"; repFamily "ERVL"; repLeft "-97"; repStart "4466"; chr22 rmsk exon 46021689 46022195 1163 + . gene_id "ERV316A3_22q13.31b"; transcript_id "ERV316A3_22q13.31b"; locus "ERV316A3_22q13.31b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2744"; repClass "LTR"; repEnd "563"; repFamily "ERVL"; repLeft "-5"; repStart "4"; ### HERV3_22q13.31 ### chr22 rmsk gene 46180796 46181925 . + . gene_id "HERV3_22q13.31"; transcript_id "HERV3_22q13.31"; locus "HERV3_22q13.31"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0081"; model_cov "1147"; model_pct "13.6"; chr22 rmsk exon 46180796 46181925 3035 + . gene_id "HERV3_22q13.31"; transcript_id "HERV3_22q13.31"; locus "HERV3_22q13.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0081"; repClass "LTR"; repEnd "1148"; repFamily "ERV1"; repLeft "-7278"; repStart "1"; ### MER4_22q13.31b ### chr22 rmsk gene 47578322 47585857 . + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0797"; model_cov "5981"; model_pct "90.6"; chr22 rmsk exon 47578322 47578766 3023 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0797"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 47578781 47579058 11441 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "-6280"; repStart "13"; chr22 rmsk exon 47579389 47581465 11441 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "2493"; repFamily "ERV1"; repLeft "-4105"; repStart "263"; chr22 rmsk exon 47581709 47581946 3015 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "2954"; repFamily "ERV1"; repLeft "-3644"; repStart "2737"; chr22 rmsk exon 47581973 47582452 3015 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "3471"; repFamily "ERV1"; repLeft "-3127"; repStart "2955"; chr22 rmsk exon 47582435 47583253 15749 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "4727"; repFamily "ERV1"; repLeft "-1871"; repStart "3882"; chr22 rmsk exon 47583561 47585406 15749 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0797"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "4728"; chr22 rmsk exon 47585412 47585857 3028 + . gene_id "MER4_22q13.31b"; transcript_id "MER4_22q13.31b"; locus "MER4_22q13.31b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0797"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_22q13.31c ### chr22 rmsk gene 47734263 47735569 . - . gene_id "ERVLE_22q13.31c"; transcript_id "ERVLE_22q13.31c"; locus "ERVLE_22q13.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3600"; model_cov "1362"; model_pct "24.0"; chr22 rmsk exon 47734263 47735168 3453 - . gene_id "ERVLE_22q13.31c"; transcript_id "ERVLE_22q13.31c"; locus "ERVLE_22q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3600"; repClass "LTR"; repEnd "4737"; repFamily "ERVL"; repLeft "3815"; repStart "-930"; chr22 rmsk exon 47735165 47735569 868 - . gene_id "ERVLE_22q13.31c"; transcript_id "ERVLE_22q13.31c"; locus "ERVLE_22q13.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3600"; repClass "LTR"; repEnd "3811"; repFamily "ERVL"; repLeft "3371"; repStart "-1856"; ### ERVLE_22q13.31d ### chr22 rmsk gene 47859718 47861696 . - . gene_id "ERVLE_22q13.31d"; transcript_id "ERVLE_22q13.31d"; locus "ERVLE_22q13.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3601"; model_cov "823"; model_pct "14.5"; chr22 rmsk exon 47859718 47860374 1595 - . gene_id "ERVLE_22q13.31d"; transcript_id "ERVLE_22q13.31d"; locus "ERVLE_22q13.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3601"; repClass "LTR"; repEnd "2329"; repFamily "ERVL"; repLeft "1664"; repStart "-3338"; chr22 rmsk exon 47861540 47861696 447 - . gene_id "ERVLE_22q13.31d"; transcript_id "ERVLE_22q13.31d"; locus "ERVLE_22q13.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3601"; repClass "LTR"; repEnd "990"; repFamily "ERVL"; repLeft "832"; repStart "-4677"; ### ERVLE_22q13.31e ### chr22 rmsk gene 47948485 47950432 . - . gene_id "ERVLE_22q13.31e"; transcript_id "ERVLE_22q13.31e"; locus "ERVLE_22q13.31e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3602"; model_cov "1861"; model_pct "32.8"; chr22 rmsk exon 47948485 47948873 952 - . gene_id "ERVLE_22q13.31e"; transcript_id "ERVLE_22q13.31e"; locus "ERVLE_22q13.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3602"; repClass "LTR"; repEnd "2441"; repFamily "ERVL"; repLeft "2039"; repStart "-3226"; chr22 rmsk exon 47948927 47949352 396 - . gene_id "ERVLE_22q13.31e"; transcript_id "ERVLE_22q13.31e"; locus "ERVLE_22q13.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3602"; repClass "LTR"; repEnd "1944"; repFamily "ERVL"; repLeft "1519"; repStart "-3723"; chr22 rmsk exon 47949425 47950432 2189 - . gene_id "ERVLE_22q13.31e"; transcript_id "ERVLE_22q13.31e"; locus "ERVLE_22q13.31e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3602"; repClass "LTR"; repEnd "1326"; repFamily "ERVL"; repLeft "292"; repStart "-4341"; ### ERVLE_22q13.32 ### chr22 rmsk gene 48184140 48186208 . - . gene_id "ERVLE_22q13.32"; transcript_id "ERVLE_22q13.32"; locus "ERVLE_22q13.32"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3603"; model_cov "1257"; model_pct "22.2"; chr22 rmsk exon 48184140 48184751 1539 - . gene_id "ERVLE_22q13.32"; transcript_id "ERVLE_22q13.32"; locus "ERVLE_22q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3603"; repClass "LTR"; repEnd "5269"; repFamily "ERVL"; repLeft "4635"; repStart "-398"; chr22 rmsk exon 48185263 48185427 303 - . gene_id "ERVLE_22q13.32"; transcript_id "ERVLE_22q13.32"; locus "ERVLE_22q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3603"; repClass "LTR"; repEnd "4359"; repFamily "ERVL"; repLeft "4187"; repStart "-1308"; chr22 rmsk exon 48185714 48185786 376 - . gene_id "ERVLE_22q13.32"; transcript_id "ERVLE_22q13.32"; locus "ERVLE_22q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3603"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "3224"; repStart "-2373"; chr22 rmsk exon 48185835 48186208 1127 - . gene_id "ERVLE_22q13.32"; transcript_id "ERVLE_22q13.32"; locus "ERVLE_22q13.32"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3603"; repClass "LTR"; repEnd "3131"; repFamily "ERVL"; repLeft "2750"; repStart "-2536"; ### ERVLB4_22q13.32b ### chr22 rmsk gene 48456289 48461048 . + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; category "insert*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1761"; model_cov "2774"; model_pct "48.5"; chr22 rmsk exon 48456289 48456648 1881 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "-27"; repStart "5"; chr22 rmsk exon 48456649 48457105 1769 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "551"; repFamily "ERVL"; repLeft "-5163"; repStart "78"; chr22 rmsk exon 48457109 48457244 7358 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "-4786"; repStart "808"; chr22 rmsk exon 48457523 48458219 7358 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "1633"; repFamily "ERVL"; repLeft "-4081"; repStart "929"; chr22 rmsk exon 48458517 48459417 7358 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "-3199"; repStart "1634"; chr22 rmsk exon 48459417 48459724 1782 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; prev_strand "-"; repClass "LTR"; repEnd "3434"; repFamily "ERVL"; repLeft "3115"; repStart "-2280"; chr22 rmsk exon 48459727 48460009 1502 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; prev_strand "-"; repClass "LTR"; repEnd "2804"; repFamily "ERVL"; repLeft "2506"; repStart "-2910"; chr22 rmsk exon 48460009 48460468 2360 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "-1141"; repStart "4102"; chr22 rmsk exon 48460468 48460525 442 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "4285"; repFamily "ERVL"; repLeft "-1429"; repStart "4222"; chr22 rmsk exon 48460985 48461048 265 + . gene_id "ERVLB4_22q13.32b"; transcript_id "ERVLB4_22q13.32b"; locus "ERVLB4_22q13.32b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1761"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-1082"; repStart "4570"; ### LTR57_22q13.32 ### chr22 rmsk gene 48968230 48973023 . - . gene_id "LTR57_22q13.32"; transcript_id "LTR57_22q13.32"; locus "LTR57_22q13.32"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0189"; model_cov "2593"; model_pct "48.5"; chr22 rmsk exon 48968230 48970439 10977 - . gene_id "LTR57_22q13.32"; transcript_id "LTR57_22q13.32"; locus "LTR57_22q13.32"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0189"; repClass "LTR"; repEnd "3835"; repFamily "ERVL"; repLeft "1514"; repStart "-1508"; chr22 rmsk exon 48972754 48973023 1416 - . gene_id "LTR57_22q13.32"; transcript_id "LTR57_22q13.32"; locus "LTR57_22q13.32"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0189"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "1257"; repStart "-3814"; ### ERVLB4_22q13.32a ### chr22 rmsk gene 49097803 49099489 . + . gene_id "ERVLB4_22q13.32a"; transcript_id "ERVLB4_22q13.32a"; locus "ERVLB4_22q13.32a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1764"; model_cov "1256"; model_pct "22.0"; chr22 rmsk exon 49097803 49098940 5132 + . gene_id "ERVLB4_22q13.32a"; transcript_id "ERVLB4_22q13.32a"; locus "ERVLB4_22q13.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1764"; repClass "LTR"; repEnd "5656"; repFamily "ERVL"; repLeft "-58"; repStart "4456"; chr22 rmsk exon 49099240 49099305 5132 + . gene_id "ERVLB4_22q13.32a"; transcript_id "ERVLB4_22q13.32a"; locus "ERVLB4_22q13.32a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1764"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5657"; chr22 rmsk exon 49099363 49099489 619 + . gene_id "ERVLB4_22q13.32a"; transcript_id "ERVLB4_22q13.32a"; locus "ERVLB4_22q13.32a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1764"; repClass "LTR"; repEnd "205"; repFamily "ERVL"; repLeft "-192"; repStart "75"; ### ERV316A3_22q13.33a ### chr22 rmsk gene 49930842 49933439 . - . gene_id "ERV316A3_22q13.33a"; transcript_id "ERV316A3_22q13.33a"; locus "ERV316A3_22q13.33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2746"; model_cov "1412"; model_pct "27.0"; chr22 rmsk exon 49930842 49931023 549 - . gene_id "ERV316A3_22q13.33a"; transcript_id "ERV316A3_22q13.33a"; locus "ERV316A3_22q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2746"; repClass "LTR"; repEnd "2908"; repFamily "ERVL"; repLeft "2717"; repStart "-2318"; chr22 rmsk exon 49931029 49931425 1329 - . gene_id "ERV316A3_22q13.33a"; transcript_id "ERV316A3_22q13.33a"; locus "ERV316A3_22q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2746"; repClass "LTR"; repEnd "2615"; repFamily "ERVL"; repLeft "2193"; repStart "-2611"; chr22 rmsk exon 49931720 49932288 1329 - . gene_id "ERV316A3_22q13.33a"; transcript_id "ERV316A3_22q13.33a"; locus "ERV316A3_22q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2746"; repClass "LTR"; repEnd "2192"; repFamily "ERVL"; repLeft "1610"; repStart "-3034"; chr22 rmsk exon 49933205 49933439 1329 - . gene_id "ERV316A3_22q13.33a"; transcript_id "ERV316A3_22q13.33a"; locus "ERV316A3_22q13.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2746"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "1392"; repStart "-3617"; ### ERVLE_22q13.33 ### chr22 rmsk gene 50583743 50587782 . + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3606"; model_cov "3532"; model_pct "62.3"; chr22 rmsk exon 50583743 50584084 1197 + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3606"; repClass "LTR"; repEnd "2204"; repFamily "ERVL"; repLeft "-3463"; repStart "1891"; chr22 rmsk exon 50584690 50585464 1197 + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3606"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "-2631"; repStart "2205"; chr22 rmsk exon 50585508 50586147 1078 + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3606"; repClass "LTR"; repEnd "3460"; repFamily "ERVL"; repLeft "-2207"; repStart "2667"; chr22 rmsk exon 50586209 50586470 664 + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3606"; repClass "LTR"; repEnd "4142"; repFamily "ERVL"; repLeft "-1525"; repStart "3879"; chr22 rmsk exon 50586558 50587782 1501 + . gene_id "ERVLE_22q13.33"; transcript_id "ERVLE_22q13.33"; locus "ERVLE_22q13.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3606"; repClass "LTR"; repEnd "5193"; repFamily "ERVL"; repLeft "-474"; repStart "3861"; ### MER4_22q13.33a ### chr22 rmsk gene 50645106 50646851 . + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0798"; model_cov "962"; model_pct "14.6"; chr22 rmsk exon 50645106 50645497 2617 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0798"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22 rmsk exon 50645501 50645910 2649 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0798"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-6162"; repStart "1"; chr22 rmsk exon 50645978 50646039 259 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0798"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "626"; chr22 rmsk exon 50646027 50646112 381 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0798"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr22 rmsk exon 50646180 50646302 972 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0798"; repClass "LTR"; repEnd "2232"; repFamily "ERV1"; repLeft "-4366"; repStart "2106"; chr22 rmsk exon 50646610 50646851 972 + . gene_id "MER4_22q13.33a"; transcript_id "MER4_22q13.33a"; locus "MER4_22q13.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0798"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2233"; ### MER4_22q13.33b ### chr22 rmsk gene 50647143 50650658 . + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0799"; model_cov "3038"; model_pct "46.0"; chr22 rmsk exon 50647143 50647218 1982 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "2117"; repFamily "ERV1"; repLeft "-4481"; repStart "2036"; chr22 rmsk exon 50647531 50647881 1982 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "2118"; chr22 rmsk exon 50648121 50648256 3859 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "2869"; repFamily "ERV1"; repLeft "-3729"; repStart "2736"; chr22 rmsk exon 50648547 50649038 3859 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "3388"; repFamily "ERV1"; repLeft "-3210"; repStart "2870"; chr22 rmsk exon 50649332 50649625 3859 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3389"; chr22 rmsk exon 50649625 50650658 5709 + . gene_id "MER4_22q13.33b"; transcript_id "MER4_22q13.33b"; locus "MER4_22q13.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0799"; repClass "LTR"; repEnd "5810"; repFamily "ERV1"; repLeft "-788"; repStart "4172"; ### MER4_22q13.33c ### chr22 rmsk gene 50650878 50653154 . + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0800"; model_cov "898"; model_pct "13.6"; chr22 rmsk exon 50650878 50650906 4960 + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0800"; repClass "LTR"; repEnd "5713"; repFamily "ERV1"; repLeft "-885"; repStart "5691"; chr22 rmsk exon 50651222 50651508 4960 + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0800"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-582"; repStart "5714"; chr22 rmsk exon 50651812 50651969 4960 + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0800"; repClass "LTR"; repEnd "6182"; repFamily "ERV1"; repLeft "-416"; repStart "6017"; chr22 rmsk exon 50652280 50652675 4960 + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0800"; repClass "LTR"; repEnd "6592"; repFamily "ERV1"; repLeft "-6"; repStart "6183"; chr22 rmsk exon 50652686 50653154 3568 + . gene_id "MER4_22q13.33c"; transcript_id "MER4_22q13.33c"; locus "MER4_22q13.33c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0800"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_22q13.33b ### chr22 rmsk gene 50765992 50767060 . + . gene_id "ERV316A3_22q13.33b"; transcript_id "ERV316A3_22q13.33b"; locus "ERV316A3_22q13.33b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2747"; model_cov "732"; model_pct "14.0"; chr22 rmsk exon 50765992 50766701 1139 + . gene_id "ERV316A3_22q13.33b"; transcript_id "ERV316A3_22q13.33b"; locus "ERV316A3_22q13.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2747"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "4492"; chr22 rmsk exon 50766811 50767060 649 + . gene_id "ERV316A3_22q13.33b"; transcript_id "ERV316A3_22q13.33b"; locus "ERV316A3_22q13.33b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2747"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-9"; repStart "161"; ### LTR19_Xp22.33 ### chrX rmsk gene 1443947 1447420 . + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0061"; model_cov "1567"; model_pct "28.1"; chrX rmsk exon 1443947 1444189 804 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-140"; repStart "15"; chrX rmsk exon 1444549 1444716 807 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "169"; repFamily "ERV1"; repLeft "-5417"; repStart "1"; chrX rmsk exon 1444698 1445607 5305 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "945"; repFamily "ERV1"; repLeft "-4641"; repStart "21"; chrX rmsk exon 1446799 1447204 1583 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "5501"; repFamily "ERV1"; repLeft "-85"; repStart "5026"; chrX rmsk exon 1447248 1447290 295 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "-441"; repStart "3"; chrX rmsk exon 1447385 1447420 230 + . gene_id "LTR19_Xp22.33"; transcript_id "LTR19_Xp22.33"; locus "LTR19_Xp22.33"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0061"; repClass "LTR"; repEnd "-49"; repFamily "ERV1"; repLeft "-535"; repStart "-84"; ### HUERSP2_Xp22.33 ### chrX rmsk gene 2972209 2973779 . - . gene_id "HUERSP2_Xp22.33"; transcript_id "HUERSP2_Xp22.33"; locus "HUERSP2_Xp22.33"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0124"; model_cov "1603"; model_pct "51.9"; chrX rmsk exon 2972209 2972771 2535 - . gene_id "HUERSP2_Xp22.33"; transcript_id "HUERSP2_Xp22.33"; locus "HUERSP2_Xp22.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0124"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2467"; repStart "0"; chrX rmsk exon 2972771 2973664 2836 - . gene_id "HUERSP2_Xp22.33"; transcript_id "HUERSP2_Xp22.33"; locus "HUERSP2_Xp22.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0124"; repClass "LTR"; repEnd "-2539"; repFamily "ERV1"; repLeft "-3387"; repStart "-5627"; chrX rmsk exon 2973636 2973779 602 - . gene_id "HUERSP2_Xp22.33"; transcript_id "HUERSP2_Xp22.33"; locus "HUERSP2_Xp22.33"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0124"; repClass "LTR"; repEnd "136"; repFamily "ERV1"; repLeft "2"; repStart "-2952"; ### MER4B_Xp22.33 ### chrX rmsk gene 3040211 3051599 . + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0480"; model_cov "4525"; model_pct "67.0"; chrX rmsk exon 3040211 3041284 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "1023"; repFamily "ERV1"; repLeft "-5735"; repStart "6"; chrX rmsk exon 3041591 3042494 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "1974"; repFamily "ERV1"; repLeft "-4784"; repStart "1024"; chrX rmsk exon 3042798 3042874 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "2035"; repFamily "ERV1"; repLeft "-4723"; repStart "1975"; chrX rmsk exon 3043177 3043786 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "2649"; repFamily "ERV1"; repLeft "-4109"; repStart "2036"; chrX rmsk exon 3044087 3044310 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "2871"; repFamily "ERV1"; repLeft "-3887"; repStart "2650"; chrX rmsk exon 3044939 3045217 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "3153"; repFamily "ERV1"; repLeft "-3605"; repStart "2872"; chrX rmsk exon 3046470 3046863 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "3536"; repFamily "ERV1"; repLeft "-3222"; repStart "3154"; chrX rmsk exon 3047082 3047183 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "3642"; repFamily "ERV1"; repLeft "-3116"; repStart "3537"; chrX rmsk exon 3047476 3047808 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "3955"; repFamily "ERV1"; repLeft "-2803"; repStart "3643"; chrX rmsk exon 3048179 3048190 19273 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "-2795"; repStart "3956"; chrX rmsk exon 3048874 3049018 767 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "4105"; repFamily "ERV1"; repLeft "-2653"; repStart "3969"; chrX rmsk exon 3049769 3049848 476 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "-2572"; repStart "4107"; chrX rmsk exon 3050078 3050242 1057 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "4337"; repFamily "ERV1"; repLeft "-2421"; repStart "4169"; chrX rmsk exon 3051124 3051419 1741 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "0"; repStart "600"; chrX rmsk exon 3051420 3051599 835 + . gene_id "MER4B_Xp22.33"; transcript_id "MER4B_Xp22.33"; locus "MER4B_Xp22.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0480"; repClass "LTR"; repEnd "5105"; repFamily "ERV1"; repLeft "-1653"; repStart "4911"; ### HERVH_Xp22.33 ### chrX rmsk gene 3553142 3560161 . - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1217"; model_cov "4912"; model_pct "63.7"; chrX rmsk exon 3553142 3553575 2812 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 3553576 3553950 2746 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 3553949 3554166 1420 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 3554168 3554824 4332 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 3554827 3555331 3472 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 3555322 3555469 931 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 3555464 3557546 14831 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "899"; repStart "-4726"; chrX rmsk exon 3558729 3559727 4608 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-6810"; chrX rmsk exon 3559728 3560161 2801 - . gene_id "HERVH_Xp22.33"; transcript_id "HERVH_Xp22.33"; locus "HERVH_Xp22.33"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1217"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVEA_Xp22.33 ### chrX rmsk gene 3965875 3976187 . + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0100"; model_cov "7385"; model_pct "94.1"; chrX rmsk exon 3965875 3966315 3655 + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0100"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 3966316 3966672 2646 + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0100"; repClass "LTR"; repEnd "356"; repFamily "ERV1"; repLeft "-7491"; repStart "1"; chrX rmsk exon 3968687 3972719 53979 + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0100"; repClass "LTR"; repEnd "4882"; repFamily "ERV1"; repLeft "-2965"; repStart "816"; chrX rmsk exon 3972789 3975727 53979 + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0100"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "4883"; chrX rmsk exon 3975728 3976187 3819 + . gene_id "HERVEA_Xp22.33"; transcript_id "HERVEA_Xp22.33"; locus "HERVEA_Xp22.33"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0100"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_Xp22.33 ### chrX rmsk gene 3998825 4000550 . + . gene_id "ERV316A3_Xp22.33"; transcript_id "ERV316A3_Xp22.33"; locus "ERV316A3_Xp22.33"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2748"; model_cov "1085"; model_pct "20.8"; chrX rmsk exon 3998825 3999355 848 + . gene_id "ERV316A3_Xp22.33"; transcript_id "ERV316A3_Xp22.33"; locus "ERV316A3_Xp22.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2748"; repClass "LTR"; repEnd "1487"; repFamily "ERVL"; repLeft "-3739"; repStart "950"; chrX rmsk exon 4000028 4000550 1309 + . gene_id "ERV316A3_Xp22.33"; transcript_id "ERV316A3_Xp22.33"; locus "ERV316A3_Xp22.33"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2748"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2537"; ### ERVLE_Xp22.33 ### chrX rmsk gene 4332342 4335903 . + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3608"; model_cov "965"; model_pct "17.0"; chrX rmsk exon 4332342 4332465 362 + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3608"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "-4852"; repStart "681"; chrX rmsk exon 4333276 4333368 305 + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3608"; repClass "LTR"; repEnd "1561"; repFamily "ERVL"; repLeft "-4106"; repStart "1465"; chrX rmsk exon 4333600 4333993 574 + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3608"; repClass "LTR"; repEnd "2250"; repFamily "ERVL"; repLeft "-3417"; repStart "1845"; chrX rmsk exon 4334962 4335081 275 + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3608"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-3256"; repStart "2288"; chrX rmsk exon 4335700 4335903 395 + . gene_id "ERVLE_Xp22.33"; transcript_id "ERVLE_Xp22.33"; locus "ERVLE_Xp22.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3608"; repClass "LTR"; repEnd "2945"; repFamily "ERVL"; repLeft "-2722"; repStart "2738"; ### HERVH_Xp22.32a ### chrX rmsk gene 4540474 4546320 . - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1218"; model_cov "4906"; model_pct "63.6"; chrX rmsk exon 4540474 4540914 3594 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 4540915 4541307 2688 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 4541308 4541519 1326 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 4541521 4542183 3972 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 4542186 4542680 3076 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 4542671 4542818 817 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 4542813 4545870 14993 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 4545871 4546320 3528 - . gene_id "HERVH_Xp22.32a"; transcript_id "HERVH_Xp22.32a"; locus "HERVH_Xp22.32a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1218"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_Xp22.32 ### chrX rmsk gene 4771021 4775596 . - . gene_id "HERVL66_Xp22.32"; transcript_id "HERVL66_Xp22.32"; locus "HERVL66_Xp22.32"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0052"; model_cov "3402"; model_pct "78.6"; chrX rmsk exon 4771021 4771214 4011 - . gene_id "HERVL66_Xp22.32"; transcript_id "HERVL66_Xp22.32"; locus "HERVL66_Xp22.32"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0052"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "411"; repStart "0"; chrX rmsk exon 4771254 4771657 4011 - . gene_id "HERVL66_Xp22.32"; transcript_id "HERVL66_Xp22.32"; locus "HERVL66_Xp22.32"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0052"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "1"; repStart "-200"; chrX rmsk exon 4771658 4775010 20391 - . gene_id "HERVL66_Xp22.32"; transcript_id "HERVL66_Xp22.32"; locus "HERVL66_Xp22.32"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0052"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "927"; repStart "0"; chrX rmsk exon 4775030 4775596 4113 - . gene_id "HERVL66_Xp22.32"; transcript_id "HERVL66_Xp22.32"; locus "HERVL66_Xp22.32"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0052"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLE_Xp22.32a ### chrX rmsk gene 4850571 4851596 . + . gene_id "ERVLE_Xp22.32a"; transcript_id "ERVLE_Xp22.32a"; locus "ERVLE_Xp22.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3609"; model_cov "797"; model_pct "14.1"; chrX rmsk exon 4850571 4851019 631 + . gene_id "ERVLE_Xp22.32a"; transcript_id "ERVLE_Xp22.32a"; locus "ERVLE_Xp22.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3609"; repClass "LTR"; repEnd "1002"; repFamily "ERVL"; repLeft "-4665"; repStart "545"; chrX rmsk exon 4851246 4851596 626 + . gene_id "ERVLE_Xp22.32a"; transcript_id "ERVLE_Xp22.32a"; locus "ERVLE_Xp22.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3609"; repClass "LTR"; repEnd "1695"; repFamily "ERVL"; repLeft "-3972"; repStart "1355"; ### HERVH_Xp22.32b ### chrX rmsk gene 4891614 4897331 . + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1219"; model_cov "4906"; model_pct "63.6"; chrX rmsk exon 4891614 4892064 3550 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 4892067 4894984 18919 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 4894979 4895126 824 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 4895117 4895619 3097 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 4895622 4896284 4209 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 4896286 4896509 1328 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 4896510 4896882 2312 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 4896883 4897331 3495 + . gene_id "HERVH_Xp22.32b"; transcript_id "HERVH_Xp22.32b"; locus "HERVH_Xp22.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1219"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### ERVLE_Xp22.32b ### chrX rmsk gene 5495101 5496390 . - . gene_id "ERVLE_Xp22.32b"; transcript_id "ERVLE_Xp22.32b"; locus "ERVLE_Xp22.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3612"; model_cov "791"; model_pct "14.0"; chrX rmsk exon 5495101 5495503 297 - . gene_id "ERVLE_Xp22.32b"; transcript_id "ERVLE_Xp22.32b"; locus "ERVLE_Xp22.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3612"; repClass "LTR"; repEnd "3419"; repFamily "ERVL"; repLeft "3000"; repStart "-2248"; chrX rmsk exon 5496007 5496390 526 - . gene_id "ERVLE_Xp22.32b"; transcript_id "ERVLE_Xp22.32b"; locus "ERVLE_Xp22.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3612"; repClass "LTR"; repEnd "2761"; repFamily "ERVL"; repLeft "2389"; repStart "-2906"; ### HERVH_Xp22.31 ### chrX rmsk gene 6272220 6277943 . - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1220"; model_cov "4898"; model_pct "63.5"; chrX rmsk exon 6272220 6272628 3069 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 6272629 6272997 2281 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 6272998 6273215 1430 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 6273217 6273878 4450 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 6273881 6274374 3522 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chrX rmsk exon 6274374 6274521 869 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 6274516 6277532 20370 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 6277535 6277943 3084 - . gene_id "HERVH_Xp22.31"; transcript_id "HERVH_Xp22.31"; locus "HERVH_Xp22.31"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1220"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_Xp22.31 ### chrX rmsk gene 7235871 7237312 . - . gene_id "MER4_Xp22.31"; transcript_id "MER4_Xp22.31"; locus "MER4_Xp22.31"; category "internal"; intModel "MER4-int"; locid "MER4-int_0803"; model_cov "1226"; model_pct "18.6"; chrX rmsk exon 7235871 7236156 1714 - . gene_id "MER4_Xp22.31"; transcript_id "MER4_Xp22.31"; locus "MER4_Xp22.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0803"; repClass "LTR"; repEnd "3050"; repFamily "ERV1"; repLeft "2737"; repStart "-3548"; chrX rmsk exon 7236401 7237190 4714 - . gene_id "MER4_Xp22.31"; transcript_id "MER4_Xp22.31"; locus "MER4_Xp22.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0803"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1677"; repStart "-4103"; chrX rmsk exon 7237222 7237312 479 - . gene_id "MER4_Xp22.31"; transcript_id "MER4_Xp22.31"; locus "MER4_Xp22.31"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0803"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "1131"; repStart "-5372"; ### ERVL_Xp22.31 ### chrX rmsk gene 7617069 7618775 . - . gene_id "ERVL_Xp22.31"; transcript_id "ERVL_Xp22.31"; locus "ERVL_Xp22.31"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0464"; model_cov "1512"; model_pct "26.3"; chrX rmsk exon 7617069 7617343 669 - . gene_id "ERVL_Xp22.31"; transcript_id "ERVL_Xp22.31"; locus "ERVL_Xp22.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0464"; repClass "LTR"; repEnd "2994"; repFamily "ERVL"; repLeft "2707"; repStart "-2763"; chrX rmsk exon 7617501 7617915 709 - . gene_id "ERVL_Xp22.31"; transcript_id "ERVL_Xp22.31"; locus "ERVL_Xp22.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0464"; repClass "LTR"; repEnd "2515"; repFamily "ERVL"; repLeft "2083"; repStart "-3242"; chrX rmsk exon 7617925 7618127 376 - . gene_id "ERVL_Xp22.31"; transcript_id "ERVL_Xp22.31"; locus "ERVL_Xp22.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0464"; repClass "LTR"; repEnd "2697"; repFamily "ERVL"; repLeft "2488"; repStart "-3060"; chrX rmsk exon 7618212 7618775 449 - . gene_id "ERVL_Xp22.31"; transcript_id "ERVL_Xp22.31"; locus "ERVL_Xp22.31"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0464"; repClass "LTR"; repEnd "1622"; repFamily "ERVL"; repLeft "1038"; repStart "-4135"; ### HERVW_Xp22.31 ### chrX rmsk gene 7699169 7704068 . - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0304"; model_cov "3938"; model_pct "45.7"; chrX rmsk exon 7699169 7699492 2623 - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0304"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "1"; repStart "-456"; chrX rmsk exon 7699496 7701137 12719 - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0304"; repClass "LTR"; repEnd "8623"; repFamily "ERV1"; repLeft "6980"; repStart "-3"; chrX rmsk exon 7701129 7702005 7121 - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0304"; repClass "LTR"; repEnd "3903"; repFamily "ERV1"; repLeft "3027"; repStart "-4723"; chrX rmsk exon 7702005 7703541 9781 - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0304"; repClass "LTR"; repEnd "1420"; repFamily "ERV1"; repLeft "1"; repStart "-7206"; chrX rmsk exon 7703542 7704068 3832 - . gene_id "HERVW_Xp22.31"; transcript_id "HERVW_Xp22.31"; locus "HERVW_Xp22.31"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0304"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "256"; repStart "0"; ### HERVL_Xp22.31a ### chrX rmsk gene 7974863 7979983 . + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1268"; model_cov "4186"; model_pct "74.0"; chrX rmsk exon 7974863 7975245 2697 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chrX rmsk exon 7975277 7975288 2697 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "390"; chrX rmsk exon 7975311 7976047 5560 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "1175"; repFamily "ERVL"; repLeft "-4479"; repStart "438"; chrX rmsk exon 7976044 7979473 26292 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2205"; chrX rmsk exon 7979474 7979854 2846 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chrX rmsk exon 7979888 7979983 2846 + . gene_id "HERVL_Xp22.31a"; transcript_id "HERVL_Xp22.31a"; locus "HERVL_Xp22.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1268"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### HERVL40_Xp22.31 ### chrX rmsk gene 8750479 8751503 . - . gene_id "HERVL40_Xp22.31"; transcript_id "HERVL40_Xp22.31"; locus "HERVL40_Xp22.31"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0457"; model_cov "1055"; model_pct "19.1"; chrX rmsk exon 8750479 8751048 1915 - . gene_id "HERVL40_Xp22.31"; transcript_id "HERVL40_Xp22.31"; locus "HERVL40_Xp22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0457"; repClass "LTR"; repEnd "3119"; repFamily "ERVL"; repLeft "2526"; repStart "-2411"; chrX rmsk exon 8751050 8751503 604 - . gene_id "HERVL40_Xp22.31"; transcript_id "HERVL40_Xp22.31"; locus "HERVL40_Xp22.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0457"; repClass "LTR"; repEnd "1612"; repFamily "ERVL"; repLeft "1150"; repStart "-3918"; ### HUERSP3B_Xp22.31 ### chrX rmsk gene 8768037 8772821 . - . gene_id "HUERSP3B_Xp22.31"; transcript_id "HUERSP3B_Xp22.31"; locus "HUERSP3B_Xp22.31"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0137"; model_cov "5179"; model_pct "69.8"; chrX rmsk exon 8768037 8768670 3477 - . gene_id "HUERSP3B_Xp22.31"; transcript_id "HUERSP3B_Xp22.31"; locus "HUERSP3B_Xp22.31"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3b-int_0137"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "4"; repStart "-2"; chrX rmsk exon 8769205 8771002 13431 - . gene_id "HUERSP3B_Xp22.31"; transcript_id "HUERSP3B_Xp22.31"; locus "HUERSP3B_Xp22.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0137"; repClass "LTR"; repEnd "5887"; repFamily "ERV1"; repLeft "2428"; repStart "-1531"; chrX rmsk exon 8771067 8772821 13431 - . gene_id "HUERSP3B_Xp22.31"; transcript_id "HUERSP3B_Xp22.31"; locus "HUERSP3B_Xp22.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0137"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "3342"; repStart "-2356"; ### HERVL_Xp22.31b ### chrX rmsk gene 9090837 9092255 . - . gene_id "HERVL_Xp22.31b"; transcript_id "HERVL_Xp22.31b"; locus "HERVL_Xp22.31b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1270"; model_cov "1436"; model_pct "25.4"; chrX rmsk exon 9090837 9092255 10797 - . gene_id "HERVL_Xp22.31b"; transcript_id "HERVL_Xp22.31b"; locus "HERVL_Xp22.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1270"; repClass "LTR"; repEnd "4254"; repFamily "ERVL"; repLeft "2818"; repStart "-1400"; ### MER41_Xp22.31 ### chrX rmsk gene 9225281 9226042 . - . gene_id "MER41_Xp22.31"; transcript_id "MER41_Xp22.31"; locus "MER41_Xp22.31"; category "internal"; intModel "MER41-int"; locid "MER41-int_0556"; model_cov "780"; model_pct "13.1"; chrX rmsk exon 9225281 9226042 4940 - . gene_id "MER41_Xp22.31"; transcript_id "MER41_Xp22.31"; locus "MER41_Xp22.31"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0556"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "2051"; repStart "-3115"; ### HUERSP1_Xp22.2 ### chrX rmsk gene 9665455 9670571 . + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0213"; model_cov "4811"; model_pct "76.8"; chrX rmsk exon 9665455 9665489 10992 + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0213"; repClass "LTR"; repEnd "2103"; repFamily "ERV1"; repLeft "-4160"; repStart "2068"; chrX rmsk exon 9665540 9667030 10992 + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0213"; repClass "LTR"; repEnd "3613"; repFamily "ERV1"; repLeft "-2650"; repStart "2104"; chrX rmsk exon 9667258 9669295 9634 + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0213"; repClass "LTR"; repEnd "5747"; repFamily "ERV1"; repLeft "-516"; repStart "2798"; chrX rmsk exon 9669543 9669851 1451 + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0213"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5945"; chrX rmsk exon 9669852 9670571 2545 + . gene_id "HUERSP1_Xp22.2"; transcript_id "HUERSP1_Xp22.2"; locus "HUERSP1_Xp22.2"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0213"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xp22.2 ### chrX rmsk gene 9809093 9815987 . - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1271"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 9809093 9809501 3082 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chrX rmsk exon 9809502 9809679 43121 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5470"; repStart "0"; chrX rmsk exon 9809976 9815382 43121 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "5469"; repFamily "ERVL"; repLeft "1"; repStart "-185"; chrX rmsk exon 9815383 9815434 2955 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "397"; repStart "0"; chrX rmsk exon 9815482 9815535 2955 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "396"; repFamily "ERVL"; repLeft "390"; repStart "-48"; chrX rmsk exon 9815607 9815987 2955 - . gene_id "HERVL_Xp22.2"; transcript_id "HERVL_Xp22.2"; locus "HERVL_Xp22.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1271"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### HARLEQUIN_Xp22.2 ### chrX rmsk gene 10584793 10590340 . - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0178"; model_cov "4173"; model_pct "60.5"; chrX rmsk exon 10584793 10585283 2427 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chrX rmsk exon 10585284 10585405 628 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "6779"; repStart "0"; chrX rmsk exon 10585400 10587758 18254 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "5710"; repFamily "ERV1"; repLeft "3352"; repStart "-1186"; chrX rmsk exon 10587758 10588329 3914 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1984"; repStart "-4322"; chrX rmsk exon 10588320 10589308 6605 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "1341"; repFamily "ERV1"; repLeft "282"; repStart "-5555"; chrX rmsk exon 10589310 10589361 274 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "-613"; repFamily "ERV1"; repLeft "-662"; repStart "-7509"; chrX rmsk exon 10589853 10590340 2480 - . gene_id "HARLEQUIN_Xp22.2"; transcript_id "HARLEQUIN_Xp22.2"; locus "HARLEQUIN_Xp22.2"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0178"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_Xp22.2a ### chrX rmsk gene 12935112 12937470 . - . gene_id "MER4_Xp22.2a"; transcript_id "MER4_Xp22.2a"; locus "MER4_Xp22.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0804"; model_cov "2241"; model_pct "34.0"; chrX rmsk exon 12935112 12935423 2257 - . gene_id "MER4_Xp22.2a"; transcript_id "MER4_Xp22.2a"; locus "MER4_Xp22.2a"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0804"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "291"; repStart "0"; chrX rmsk exon 12935666 12936684 8107 - . gene_id "MER4_Xp22.2a"; transcript_id "MER4_Xp22.2a"; locus "MER4_Xp22.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0804"; repClass "LTR"; repEnd "4459"; repFamily "ERV1"; repLeft "3419"; repStart "-2139"; chrX rmsk exon 12936976 12937470 8107 - . gene_id "MER4_Xp22.2a"; transcript_id "MER4_Xp22.2a"; locus "MER4_Xp22.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0804"; repClass "LTR"; repEnd "3418"; repFamily "ERV1"; repLeft "2217"; repStart "-3180"; ### LTR57_Xp22.2 ### chrX rmsk gene 12937471 12938029 . - . gene_id "LTR57_Xp22.2"; transcript_id "LTR57_Xp22.2"; locus "LTR57_Xp22.2"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0190"; model_cov "583"; model_pct "10.9"; chrX rmsk exon 12937471 12938029 1886 - . gene_id "LTR57_Xp22.2"; transcript_id "LTR57_Xp22.2"; locus "LTR57_Xp22.2"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0190"; repClass "LTR"; repEnd "1575"; repFamily "ERVL"; repLeft "992"; repStart "-3768"; ### MER4_Xp22.2b ### chrX rmsk gene 12938030 12939864 . - . gene_id "MER4_Xp22.2b"; transcript_id "MER4_Xp22.2b"; locus "MER4_Xp22.2b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0805"; model_cov "1426"; model_pct "21.6"; chrX rmsk exon 12938030 12938061 8107 - . gene_id "MER4_Xp22.2b"; transcript_id "MER4_Xp22.2b"; locus "MER4_Xp22.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0805"; repClass "LTR"; repEnd "3418"; repFamily "ERV1"; repLeft "3337"; repStart "-3180"; chrX rmsk exon 12938353 12939332 6801 - . gene_id "MER4_Xp22.2b"; transcript_id "MER4_Xp22.2b"; locus "MER4_Xp22.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0805"; repClass "LTR"; repEnd "2134"; repFamily "ERV1"; repLeft "1161"; repStart "-4464"; chrX rmsk exon 12939374 12939636 6801 - . gene_id "MER4_Xp22.2b"; transcript_id "MER4_Xp22.2b"; locus "MER4_Xp22.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0805"; repClass "LTR"; repEnd "1160"; repFamily "ERV1"; repLeft "866"; repStart "-5438"; chrX rmsk exon 12939750 12939864 447 - . gene_id "MER4_Xp22.2b"; transcript_id "MER4_Xp22.2b"; locus "MER4_Xp22.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0805"; repClass "LTR"; repEnd "829"; repFamily "ERV1"; repLeft "751"; repStart "-5769"; ### HERVH_Xp22.2a ### chrX rmsk gene 12939865 12945537 . + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1221"; model_cov "4906"; model_pct "63.6"; chrX rmsk exon 12939865 12940276 2755 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 12940279 12943233 20591 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 12943228 12943375 947 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 12943366 12943865 3365 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 12943868 12944533 4467 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 12944535 12944750 1418 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 12944751 12945126 2469 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 12945127 12945537 2782 + . gene_id "HERVH_Xp22.2a"; transcript_id "HERVH_Xp22.2a"; locus "HERVH_Xp22.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1221"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_Xp22.2a ### chrX rmsk gene 14312512 14313807 . - . gene_id "ERVLE_Xp22.2a"; transcript_id "ERVLE_Xp22.2a"; locus "ERVLE_Xp22.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3621"; model_cov "1246"; model_pct "22.0"; chrX rmsk exon 14312512 14312597 324 - . gene_id "ERVLE_Xp22.2a"; transcript_id "ERVLE_Xp22.2a"; locus "ERVLE_Xp22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3621"; repClass "LTR"; repEnd "5441"; repFamily "ERVL"; repLeft "5348"; repStart "-226"; chrX rmsk exon 14312627 14312823 324 - . gene_id "ERVLE_Xp22.2a"; transcript_id "ERVLE_Xp22.2a"; locus "ERVLE_Xp22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3621"; repClass "LTR"; repEnd "5347"; repFamily "ERVL"; repLeft "5154"; repStart "-320"; chrX rmsk exon 14312868 14313807 2878 - . gene_id "ERVLE_Xp22.2a"; transcript_id "ERVLE_Xp22.2a"; locus "ERVLE_Xp22.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3621"; repClass "LTR"; repEnd "5076"; repFamily "ERVL"; repLeft "4116"; repStart "-591"; ### MER34B_Xp22.2 ### chrX rmsk gene 15964841 15972992 . - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; category "prototype"; intModel "MER34B-int"; locid "MER34B-int_0275"; model_cov "5348"; model_pct "99.9"; chrX rmsk exon 15964841 15965359 3277 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "565"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 15965360 15965511 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "5356"; repFamily "ERV1"; repLeft "5216"; repStart "0"; chrX rmsk exon 15965826 15966468 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "5215"; repFamily "ERV1"; repLeft "4576"; repStart "-141"; chrX rmsk exon 15966635 15967425 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "4575"; repFamily "ERV1"; repLeft "3798"; repStart "-781"; chrX rmsk exon 15967707 15968813 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "3797"; repFamily "ERV1"; repLeft "2721"; repStart "-1559"; chrX rmsk exon 15969115 15969722 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "2720"; repFamily "ERV1"; repLeft "2114"; repStart "-2636"; chrX rmsk exon 15970072 15971488 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "2113"; repFamily "ERV1"; repLeft "704"; repStart "-3243"; chrX rmsk exon 15971771 15972485 47774 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "2"; repStart "-4653"; chrX rmsk exon 15972486 15972992 3052 - . gene_id "MER34B_Xp22.2"; transcript_id "MER34B_Xp22.2"; locus "MER34B_Xp22.2"; repName "MER34B"; geneRegion "ltr"; locid "MER34B-int_0275"; repClass "LTR"; repEnd "536"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### HERVH_Xp22.2b ### chrX rmsk gene 16044720 16050414 . - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1222"; model_cov "4893"; model_pct "63.4"; chrX rmsk exon 16044720 16045122 2525 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "1"; repStart "-8"; chrX rmsk exon 16045123 16045503 2141 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 16045504 16045719 1301 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 16045721 16046383 4193 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 16046386 16046888 3182 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 16046879 16047004 622 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3161"; repStart "-4423"; chrX rmsk exon 16047005 16050013 19674 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 16050016 16050414 2732 - . gene_id "HERVH_Xp22.2b"; transcript_id "HERVH_Xp22.2b"; locus "HERVH_Xp22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1222"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xp22.2c ### chrX rmsk gene 16179202 16184434 . - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1223"; model_cov "4423"; model_pct "57.3"; chrX rmsk exon 16179202 16179611 2938 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 16179612 16179996 2408 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 16179995 16180211 1402 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 16180213 16180877 4222 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 16180880 16181379 3401 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 16181370 16181517 919 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 16181497 16183239 12270 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1264"; repStart "-4718"; chrX rmsk exon 16183246 16184026 4472 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "771"; repFamily "ERV1"; repLeft "1"; repStart "-6942"; chrX rmsk exon 16184029 16184434 2829 - . gene_id "HERVH_Xp22.2c"; transcript_id "HERVH_Xp22.2c"; locus "HERVH_Xp22.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1223"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xp22.2d ### chrX rmsk gene 16216873 16222257 . - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1224"; model_cov "5007"; model_pct "64.9"; chrX rmsk exon 16216873 16217254 2660 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 16217255 16217816 3787 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrX rmsk exon 16217810 16218070 1727 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chrX rmsk exon 16218061 16219315 4213 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "5778"; repFamily "ERV1"; repLeft "4416"; repStart "-1935"; chrX rmsk exon 16219316 16221871 13182 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "1"; repStart "-4883"; chrX rmsk exon 16221872 16222257 2698 - . gene_id "HERVH_Xp22.2d"; transcript_id "HERVH_Xp22.2d"; locus "HERVH_Xp22.2d"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1224"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xp22.2b ### chrX rmsk gene 16434262 16436398 . + . gene_id "ERVLE_Xp22.2b"; transcript_id "ERVLE_Xp22.2b"; locus "ERVLE_Xp22.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3625"; model_cov "1724"; model_pct "30.4"; chrX rmsk exon 16434262 16434717 427 + . gene_id "ERVLE_Xp22.2b"; transcript_id "ERVLE_Xp22.2b"; locus "ERVLE_Xp22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3625"; repClass "LTR"; repEnd "762"; repFamily "ERVL"; repLeft "-4905"; repStart "295"; chrX rmsk exon 16434714 16435411 1443 + . gene_id "ERVLE_Xp22.2b"; transcript_id "ERVLE_Xp22.2b"; locus "ERVLE_Xp22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3625"; repClass "LTR"; repEnd "2453"; repFamily "ERVL"; repLeft "-3214"; repStart "1713"; chrX rmsk exon 16435541 16435678 383 + . gene_id "ERVLE_Xp22.2b"; transcript_id "ERVLE_Xp22.2b"; locus "ERVLE_Xp22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3625"; repClass "LTR"; repEnd "2644"; repFamily "ERVL"; repLeft "-3023"; repStart "2495"; chrX rmsk exon 16436038 16436398 761 + . gene_id "ERVLE_Xp22.2b"; transcript_id "ERVLE_Xp22.2b"; locus "ERVLE_Xp22.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3625"; repClass "LTR"; repEnd "5316"; repFamily "ERVL"; repLeft "-351"; repStart "4948"; ### MER4_Xp22.2c ### chrX rmsk gene 16576717 16577940 . + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0808"; model_cov "1044"; model_pct "15.8"; chrX rmsk exon 16576717 16576889 3311 + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0808"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "302"; chrX rmsk exon 16576891 16577084 2542 + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0808"; repClass "LTR"; repEnd "234"; repFamily "ERV1"; repLeft "-6364"; repStart "1"; chrX rmsk exon 16577110 16577452 2542 + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0808"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-5913"; repStart "202"; chrX rmsk exon 16577441 16577552 358 + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0808"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chrX rmsk exon 16577613 16577940 1169 + . gene_id "MER4_Xp22.2c"; transcript_id "MER4_Xp22.2c"; locus "MER4_Xp22.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0808"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-4163"; repStart "2190"; ### MER4_Xp22.2d ### chrX rmsk gene 16577951 16583715 . + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0809"; model_cov "5324"; model_pct "80.7"; chrX rmsk exon 16577951 16578600 4713 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0809"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "34"; chrX rmsk exon 16578622 16579586 4506 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0809"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "786"; chrX rmsk exon 16579765 16579995 894 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0809"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3477"; chrX rmsk exon 16579966 16580049 17538 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0809"; repClass "LTR"; repEnd "3926"; repFamily "ERV1"; repLeft "-2672"; repStart "3837"; chrX rmsk exon 16580416 16582991 17538 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0809"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3927"; chrX rmsk exon 16583000 16583243 3595 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0809"; repClass "LTR"; repEnd "240"; repFamily "ERV1"; repLeft "-232"; repStart "1"; chrX rmsk exon 16583244 16583715 3497 + . gene_id "MER4_Xp22.2d"; transcript_id "MER4_Xp22.2d"; locus "MER4_Xp22.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0809"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_Xp22.2 ### chrX rmsk gene 16671289 16677993 . + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0557"; model_cov "4888"; model_pct "82.2"; chrX rmsk exon 16671289 16671443 1128 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0557"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "399"; chrX rmsk exon 16671825 16672881 5558 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0557"; repClass "LTR"; repEnd "1179"; repFamily "ERV1"; repLeft "-4767"; repStart "1"; chrX rmsk exon 16673186 16674152 11029 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0557"; repClass "LTR"; repEnd "3897"; repFamily "ERV1"; repLeft "-2049"; repStart "2111"; chrX rmsk exon 16674462 16674556 11029 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0557"; repClass "LTR"; repEnd "3968"; repFamily "ERV1"; repLeft "-1978"; repStart "3898"; chrX rmsk exon 16675286 16676779 13004 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0557"; repClass "LTR"; repEnd "5477"; repFamily "ERV1"; repLeft "-469"; repStart "4091"; chrX rmsk exon 16677082 16677540 13004 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0557"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5478"; chrX rmsk exon 16677542 16677993 3572 + . gene_id "MER41_Xp22.2"; transcript_id "MER41_Xp22.2"; locus "MER41_Xp22.2"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0557"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-87"; repStart "14"; ### PABLA_Xp22.2 ### chrX rmsk gene 16726001 16732664 . - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0151"; model_cov "3811"; model_pct "76.0"; chrX rmsk exon 16726001 16726611 4733 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 16726612 16727341 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "4072"; repStart "0"; chrX rmsk exon 16727641 16728385 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "4329"; repFamily "ERV1"; repLeft "3587"; repStart "-686"; chrX rmsk exon 16728675 16728755 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "3519"; repStart "-1429"; chrX rmsk exon 16729064 16729485 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "3518"; repFamily "ERV1"; repLeft "3118"; repStart "-1497"; chrX rmsk exon 16729782 16730073 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "3117"; repFamily "ERV1"; repLeft "2865"; repStart "-1898"; chrX rmsk exon 16730382 16731367 18359 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "2864"; repFamily "ERV1"; repLeft "1863"; repStart "-2151"; chrX rmsk exon 16731580 16731658 3161 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1575"; repStart "-3366"; chrX rmsk exon 16731954 16732292 3161 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "1574"; repFamily "ERV1"; repLeft "1242"; repStart "-3441"; chrX rmsk exon 16732294 16732386 626 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "180"; repFamily "ERV1"; repLeft "87"; repStart "-480"; chrX rmsk exon 16732581 16732664 686 - . gene_id "PABLA_Xp22.2"; transcript_id "PABLA_Xp22.2"; locus "PABLA_Xp22.2"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0151"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-576"; ### ERV316A3_Xp22.13 ### chrX rmsk gene 18011153 18012534 . + . gene_id "ERV316A3_Xp22.13"; transcript_id "ERV316A3_Xp22.13"; locus "ERV316A3_Xp22.13"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2754"; model_cov "1544"; model_pct "29.5"; chrX rmsk exon 18011153 18012534 4178 + . gene_id "ERV316A3_Xp22.13"; transcript_id "ERV316A3_Xp22.13"; locus "ERV316A3_Xp22.13"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2754"; repClass "LTR"; repEnd "5211"; repFamily "ERVL"; repLeft "-15"; repStart "3667"; ### MER101_Xp22.13 ### chrX rmsk gene 18834403 18835056 . + . gene_id "MER101_Xp22.13"; transcript_id "MER101_Xp22.13"; locus "MER101_Xp22.13"; category "internal"; intModel "MER101-int"; locid "MER101-int_0420"; model_cov "858"; model_pct "12.9"; chrX rmsk exon 18834403 18835056 753 + . gene_id "MER101_Xp22.13"; transcript_id "MER101_Xp22.13"; locus "MER101_Xp22.13"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0420"; repClass "LTR"; repEnd "2974"; repFamily "ERV1"; repLeft "-3665"; repStart "2116"; ### ERVLE_Xp22.13 ### chrX rmsk gene 18842936 18845157 . + . gene_id "ERVLE_Xp22.13"; transcript_id "ERVLE_Xp22.13"; locus "ERVLE_Xp22.13"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3626"; model_cov "766"; model_pct "13.5"; chrX rmsk exon 18842936 18843500 1892 + . gene_id "ERVLE_Xp22.13"; transcript_id "ERVLE_Xp22.13"; locus "ERVLE_Xp22.13"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3626"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "2"; chrX rmsk exon 18843505 18844063 2925 + . gene_id "ERVLE_Xp22.13"; transcript_id "ERVLE_Xp22.13"; locus "ERVLE_Xp22.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3626"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-5095"; repStart "5"; chrX rmsk exon 18844978 18845157 2925 + . gene_id "ERVLE_Xp22.13"; transcript_id "ERVLE_Xp22.13"; locus "ERVLE_Xp22.13"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3626"; repClass "LTR"; repEnd "772"; repFamily "ERVL"; repLeft "-4895"; repStart "573"; ### HERVL_Xp22.12a ### chrX rmsk gene 20037207 20040353 . + . gene_id "HERVL_Xp22.12a"; transcript_id "HERVL_Xp22.12a"; locus "HERVL_Xp22.12a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1276"; model_cov "2353"; model_pct "41.6"; chrX rmsk exon 20037207 20039536 15942 + . gene_id "HERVL_Xp22.12a"; transcript_id "HERVL_Xp22.12a"; locus "HERVL_Xp22.12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1276"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3301"; chrX rmsk exon 20039537 20039728 3022 + . gene_id "HERVL_Xp22.12a"; transcript_id "HERVL_Xp22.12a"; locus "HERVL_Xp22.12a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1276"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "-268"; repStart "1"; chrX rmsk exon 20040021 20040353 3022 + . gene_id "HERVL_Xp22.12a"; transcript_id "HERVL_Xp22.12a"; locus "HERVL_Xp22.12a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1276"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "186"; ### ERV316A3_Xp22.12 ### chrX rmsk gene 20575086 20578575 . + . gene_id "ERV316A3_Xp22.12"; transcript_id "ERV316A3_Xp22.12"; locus "ERV316A3_Xp22.12"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2755"; model_cov "1744"; model_pct "33.4"; chrX rmsk exon 20575086 20575536 1550 + . gene_id "ERV316A3_Xp22.12"; transcript_id "ERV316A3_Xp22.12"; locus "ERV316A3_Xp22.12"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2755"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "4"; chrX rmsk exon 20575775 20576427 674 + . gene_id "ERV316A3_Xp22.12"; transcript_id "ERV316A3_Xp22.12"; locus "ERV316A3_Xp22.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2755"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "-4294"; repStart "251"; chrX rmsk exon 20577478 20578575 2127 + . gene_id "ERV316A3_Xp22.12"; transcript_id "ERV316A3_Xp22.12"; locus "ERV316A3_Xp22.12"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2755"; repClass "LTR"; repEnd "2031"; repFamily "ERVL"; repLeft "-3195"; repStart "968"; ### ERVLE_Xp22.12a ### chrX rmsk gene 20620130 20621550 . + . gene_id "ERVLE_Xp22.12a"; transcript_id "ERVLE_Xp22.12a"; locus "ERVLE_Xp22.12a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3628"; model_cov "812"; model_pct "14.3"; chrX rmsk exon 20620130 20620833 979 + . gene_id "ERVLE_Xp22.12a"; transcript_id "ERVLE_Xp22.12a"; locus "ERVLE_Xp22.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3628"; repClass "LTR"; repEnd "2218"; repFamily "ERVL"; repLeft "-3449"; repStart "1498"; chrX rmsk exon 20621466 20621550 267 + . gene_id "ERVLE_Xp22.12a"; transcript_id "ERVLE_Xp22.12a"; locus "ERVLE_Xp22.12a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3628"; repClass "LTR"; repEnd "2275"; repFamily "ERVL"; repLeft "-3392"; repStart "2183"; ### HERVL_Xp22.12b ### chrX rmsk gene 20868232 20872282 . + . gene_id "HERVL_Xp22.12b"; transcript_id "HERVL_Xp22.12b"; locus "HERVL_Xp22.12b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1277"; model_cov "3508"; model_pct "62.0"; chrX rmsk exon 20868232 20868778 2036 + . gene_id "HERVL_Xp22.12b"; transcript_id "HERVL_Xp22.12b"; locus "HERVL_Xp22.12b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1277"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-97"; chrX rmsk exon 20868779 20870731 14294 + . gene_id "HERVL_Xp22.12b"; transcript_id "HERVL_Xp22.12b"; locus "HERVL_Xp22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1277"; repClass "LTR"; repEnd "1950"; repFamily "ERVL"; repLeft "-3704"; repStart "1"; chrX rmsk exon 20870723 20872282 12138 + . gene_id "HERVL_Xp22.12b"; transcript_id "HERVL_Xp22.12b"; locus "HERVL_Xp22.12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1277"; repClass "LTR"; repEnd "3710"; repFamily "ERVL"; repLeft "-1944"; repStart "2151"; ### MER4_Xp22.12 ### chrX rmsk gene 20995194 21001020 . + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0810"; model_cov "4640"; model_pct "70.3"; chrX rmsk exon 20995194 20995643 3321 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0810"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 20995647 20996161 2253 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "490"; repFamily "ERV1"; repLeft "-6108"; repStart "1"; chrX rmsk exon 20996158 20996534 977 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "1271"; repFamily "ERV1"; repLeft "-5327"; repStart "1005"; chrX rmsk exon 20996577 20997244 3970 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1808"; chrX rmsk exon 20997488 20997820 2291 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "3080"; repFamily "ERV1"; repLeft "-3518"; repStart "2737"; chrX rmsk exon 20997856 20998005 2291 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "3260"; repFamily "ERV1"; repLeft "-3338"; repStart "3081"; chrX rmsk exon 20997983 20999999 11529 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "6008"; repFamily "ERV1"; repLeft "-590"; repStart "3918"; chrX rmsk exon 21000001 21000582 3094 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0810"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6010"; chrX rmsk exon 21000590 21001020 2815 + . gene_id "MER4_Xp22.12"; transcript_id "MER4_Xp22.12"; locus "MER4_Xp22.12"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0810"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_Xp22.12b ### chrX rmsk gene 21312934 21316062 . + . gene_id "ERVLE_Xp22.12b"; transcript_id "ERVLE_Xp22.12b"; locus "ERVLE_Xp22.12b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3630"; model_cov "2166"; model_pct "38.2"; chrX rmsk exon 21312934 21313577 2522 + . gene_id "ERVLE_Xp22.12b"; transcript_id "ERVLE_Xp22.12b"; locus "ERVLE_Xp22.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3630"; repClass "LTR"; repEnd "3469"; repFamily "ERVL"; repLeft "-2198"; repStart "2775"; chrX rmsk exon 21313609 21313965 1454 + . gene_id "ERVLE_Xp22.12b"; transcript_id "ERVLE_Xp22.12b"; locus "ERVLE_Xp22.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3630"; repClass "LTR"; repEnd "3890"; repFamily "ERVL"; repLeft "-1777"; repStart "3533"; chrX rmsk exon 21313977 21314312 1577 + . gene_id "ERVLE_Xp22.12b"; transcript_id "ERVLE_Xp22.12b"; locus "ERVLE_Xp22.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3630"; repClass "LTR"; repEnd "4324"; repFamily "ERVL"; repLeft "-1343"; repStart "3974"; chrX rmsk exon 21315355 21316062 1791 + . gene_id "ERVLE_Xp22.12b"; transcript_id "ERVLE_Xp22.12b"; locus "ERVLE_Xp22.12b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3630"; repClass "LTR"; repEnd "5330"; repFamily "ERVL"; repLeft "-337"; repStart "4565"; ### ERVLE_Xp22.12c ### chrX rmsk gene 21696964 21698163 . - . gene_id "ERVLE_Xp22.12c"; transcript_id "ERVLE_Xp22.12c"; locus "ERVLE_Xp22.12c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3631"; model_cov "1267"; model_pct "22.4"; chrX rmsk exon 21696964 21697665 922 - . gene_id "ERVLE_Xp22.12c"; transcript_id "ERVLE_Xp22.12c"; locus "ERVLE_Xp22.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3631"; repClass "LTR"; repEnd "2105"; repFamily "ERVL"; repLeft "1326"; repStart "-3562"; chrX rmsk exon 21697708 21698163 1011 - . gene_id "ERVLE_Xp22.12c"; transcript_id "ERVLE_Xp22.12c"; locus "ERVLE_Xp22.12c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3631"; repClass "LTR"; repEnd "1302"; repFamily "ERVL"; repLeft "814"; repStart "-4365"; ### MER4_Xp22.11a ### chrX rmsk gene 23234251 23238516 . + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0811"; model_cov "3631"; model_pct "55.0"; chrX rmsk exon 23234251 23234460 1442 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0811"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "263"; chrX rmsk exon 23234465 23235657 6370 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0811"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "2"; chrX rmsk exon 23235989 23236832 6686 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0811"; repClass "LTR"; repEnd "2395"; repFamily "ERV1"; repLeft "-4203"; repStart "1503"; chrX rmsk exon 23237101 23237256 6686 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0811"; repClass "LTR"; repEnd "2584"; repFamily "ERV1"; repLeft "-4014"; repStart "2396"; chrX rmsk exon 23237432 23238331 6686 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0811"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2585"; chrX rmsk exon 23238331 23238516 951 + . gene_id "MER4_Xp22.11a"; transcript_id "MER4_Xp22.11a"; locus "MER4_Xp22.11a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0811"; repClass "LTR"; repEnd "4026"; repFamily "ERV1"; repLeft "-2572"; repStart "3837"; ### MER4_Xp22.11b ### chrX rmsk gene 23244576 23247865 . + . gene_id "MER4_Xp22.11b"; transcript_id "MER4_Xp22.11b"; locus "MER4_Xp22.11b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0812"; model_cov "2584"; model_pct "39.2"; chrX rmsk exon 23244576 23246816 15108 + . gene_id "MER4_Xp22.11b"; transcript_id "MER4_Xp22.11b"; locus "MER4_Xp22.11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0812"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "-284"; repStart "4012"; chrX rmsk exon 23247104 23247397 15108 + . gene_id "MER4_Xp22.11b"; transcript_id "MER4_Xp22.11b"; locus "MER4_Xp22.11b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0812"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "6315"; chrX rmsk exon 23247403 23247865 3043 + . gene_id "MER4_Xp22.11b"; transcript_id "MER4_Xp22.11b"; locus "MER4_Xp22.11b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0812"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_Xp22.11 ### chrX rmsk gene 23748936 23751401 . - . gene_id "ERV316A3_Xp22.11"; transcript_id "ERV316A3_Xp22.11"; locus "ERV316A3_Xp22.11"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2756"; model_cov "1210"; model_pct "23.2"; chrX rmsk exon 23748936 23749361 1562 - . gene_id "ERV316A3_Xp22.11"; transcript_id "ERV316A3_Xp22.11"; locus "ERV316A3_Xp22.11"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2756"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "2"; repStart "-37"; chrX rmsk exon 23749366 23749981 2660 - . gene_id "ERV316A3_Xp22.11"; transcript_id "ERV316A3_Xp22.11"; locus "ERV316A3_Xp22.11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2756"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4534"; repStart "-3"; chrX rmsk exon 23750554 23750904 2037 - . gene_id "ERV316A3_Xp22.11"; transcript_id "ERV316A3_Xp22.11"; locus "ERV316A3_Xp22.11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2756"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "4144"; repStart "-751"; chrX rmsk exon 23751202 23751401 2037 - . gene_id "ERV316A3_Xp22.11"; transcript_id "ERV316A3_Xp22.11"; locus "ERV316A3_Xp22.11"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2756"; repClass "LTR"; repEnd "4143"; repFamily "ERVL"; repLeft "3953"; repStart "-1083"; ### HML5_Xp21.3 ### chrX rmsk gene 25893165 25900469 . + . gene_id "HML5_Xp21.3"; transcript_id "HML5_Xp21.3"; locus "HML5_Xp21.3"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0128"; model_cov "6609"; model_pct "96.7"; chrX rmsk exon 25893165 25893607 2705 + . gene_id "HML5_Xp21.3"; transcript_id "HML5_Xp21.3"; locus "HML5_Xp21.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0128"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 25893610 25896029 46332 + . gene_id "HML5_Xp21.3"; transcript_id "HML5_Xp21.3"; locus "HML5_Xp21.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0128"; repClass "LTR"; repEnd "2495"; repFamily "ERVK"; repLeft "-4342"; repStart "3"; chrX rmsk exon 25896369 25900469 46332 + . gene_id "HML5_Xp21.3"; transcript_id "HML5_Xp21.3"; locus "HML5_Xp21.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0128"; repClass "LTR"; repEnd "6613"; repFamily "ERVK"; repLeft "-224"; repStart "2496"; ### MER41_Xp21.3a ### chrX rmsk gene 26372747 26375653 . - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0558"; model_cov "1245"; model_pct "20.9"; chrX rmsk exon 26372747 26373373 4472 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0558"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 26373376 26373582 1531 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0558"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "5736"; repStart "-3"; chrX rmsk exon 26373584 26373750 918 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0558"; repClass "LTR"; repEnd "1425"; repFamily "ERV1"; repLeft "1265"; repStart "-4521"; chrX rmsk exon 26374183 26374258 470 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0558"; repClass "LTR"; repEnd "1263"; repFamily "ERV1"; repLeft "1188"; repStart "-4683"; chrX rmsk exon 26374259 26375031 5373 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0558"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "1"; repStart "-5142"; chrX rmsk exon 26375032 26375653 4403 - . gene_id "MER41_Xp21.3a"; transcript_id "MER41_Xp21.3a"; locus "MER41_Xp21.3a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0558"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### MER41_Xp21.3b ### chrX rmsk gene 26468364 26471614 . - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0559"; model_cov "2207"; model_pct "37.1"; chrX rmsk exon 26468364 26468915 4201 - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0559"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chrX rmsk exon 26468916 26469087 8792 - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0559"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5785"; repStart "-2"; chrX rmsk exon 26469394 26470436 8792 - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0559"; repClass "LTR"; repEnd "5784"; repFamily "ERV1"; repLeft "4718"; repStart "-162"; chrX rmsk exon 26470439 26470980 2076 - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0559"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "1081"; repStart "-4507"; chrX rmsk exon 26470974 26471614 4174 - . gene_id "MER41_Xp21.3b"; transcript_id "MER41_Xp21.3b"; locus "MER41_Xp21.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0559"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "1"; repStart "-5321"; ### ERV316A3_Xp21.3a ### chrX rmsk gene 26587494 26588997 . + . gene_id "ERV316A3_Xp21.3a"; transcript_id "ERV316A3_Xp21.3a"; locus "ERV316A3_Xp21.3a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2759"; model_cov "787"; model_pct "15.1"; chrX rmsk exon 26587494 26587792 931 + . gene_id "ERV316A3_Xp21.3a"; transcript_id "ERV316A3_Xp21.3a"; locus "ERV316A3_Xp21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2759"; repClass "LTR"; repEnd "3613"; repFamily "ERVL"; repLeft "-1613"; repStart "3304"; chrX rmsk exon 26588490 26588857 1424 + . gene_id "ERV316A3_Xp21.3a"; transcript_id "ERV316A3_Xp21.3a"; locus "ERV316A3_Xp21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2759"; repClass "LTR"; repEnd "4020"; repFamily "ERVL"; repLeft "-1206"; repStart "3640"; chrX rmsk exon 26588898 26588997 367 + . gene_id "ERV316A3_Xp21.3a"; transcript_id "ERV316A3_Xp21.3a"; locus "ERV316A3_Xp21.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2759"; repClass "LTR"; repEnd "4216"; repFamily "ERVL"; repLeft "-1010"; repStart "4118"; ### HUERSP3B_Xp21.3a ### chrX rmsk gene 26648755 26654821 . - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0138"; model_cov "4323"; model_pct "58.3"; chrX rmsk exon 26648755 26649374 2971 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "7"; repStart "0"; chrX rmsk exon 26649383 26649636 1157 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "7414"; repFamily "ERV1"; repLeft "7158"; repStart "-4"; chrX rmsk exon 26650455 26650556 396 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "5473"; repFamily "ERV1"; repLeft "5373"; repStart "-1945"; chrX rmsk exon 26650568 26651319 4409 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "4661"; repStart "-2007"; chrX rmsk exon 26651310 26651955 4026 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "4070"; repFamily "ERV1"; repLeft "3400"; repStart "-3348"; chrX rmsk exon 26651956 26652068 607 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "3182"; repFamily "ERV1"; repLeft "3078"; repStart "-4236"; chrX rmsk exon 26652105 26653811 6524 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "1266"; repFamily "ERV1"; repLeft "-779"; repStart "-6152"; chrX rmsk exon 26654112 26654304 4761 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "-780"; repFamily "ERV1"; repLeft "-1084"; repStart "-8198"; chrX rmsk exon 26654312 26654400 358 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "2"; repStart "-7322"; chrX rmsk exon 26654418 26654821 1991 - . gene_id "HUERSP3B_Xp21.3a"; transcript_id "HUERSP3B_Xp21.3a"; locus "HUERSP3B_Xp21.3a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3b-int_0138"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-220"; ### HUERSP3B_Xp21.3b ### chrX rmsk gene 26778880 26783112 . - . gene_id "HUERSP3B_Xp21.3b"; transcript_id "HUERSP3B_Xp21.3b"; locus "HUERSP3B_Xp21.3b"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0139"; model_cov "3864"; model_pct "52.1"; chrX rmsk exon 26778880 26782653 23208 - . gene_id "HUERSP3B_Xp21.3b"; transcript_id "HUERSP3B_Xp21.3b"; locus "HUERSP3B_Xp21.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0139"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "3241"; repStart "-473"; chrX rmsk exon 26782952 26783112 23208 - . gene_id "HUERSP3B_Xp21.3b"; transcript_id "HUERSP3B_Xp21.3b"; locus "HUERSP3B_Xp21.3b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0139"; repClass "LTR"; repEnd "3240"; repFamily "ERV1"; repLeft "3080"; repStart "-4178"; ### HUERSP3_Xp21.3 ### chrX rmsk gene 26783322 26785067 . - . gene_id "HUERSP3_Xp21.3"; transcript_id "HUERSP3_Xp21.3"; locus "HUERSP3_Xp21.3"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0218"; model_cov "1114"; model_pct "12.5"; chrX rmsk exon 26783322 26784399 5990 - . gene_id "HUERSP3_Xp21.3"; transcript_id "HUERSP3_Xp21.3"; locus "HUERSP3_Xp21.3"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0218"; repClass "LTR"; repEnd "1138"; repFamily "ERV1"; repLeft "24"; repStart "-7781"; chrX rmsk exon 26784428 26785067 3732 - . gene_id "HUERSP3_Xp21.3"; transcript_id "HUERSP3_Xp21.3"; locus "HUERSP3_Xp21.3"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0218"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PABLA_Xp21.3a ### chrX rmsk gene 26880055 26883822 . - . gene_id "PABLA_Xp21.3a"; transcript_id "PABLA_Xp21.3a"; locus "PABLA_Xp21.3a"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0153"; model_cov "3286"; model_pct "65.5"; chrX rmsk exon 26880055 26880685 4808 - . gene_id "PABLA_Xp21.3a"; transcript_id "PABLA_Xp21.3a"; locus "PABLA_Xp21.3a"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0153"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 26880686 26883822 31240 - . gene_id "PABLA_Xp21.3a"; transcript_id "PABLA_Xp21.3a"; locus "PABLA_Xp21.3a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0153"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "1729"; repStart "0"; ### PABLA_Xp21.3b ### chrX rmsk gene 26884027 26886324 . - . gene_id "PABLA_Xp21.3b"; transcript_id "PABLA_Xp21.3b"; locus "PABLA_Xp21.3b"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0154"; model_cov "1727"; model_pct "34.4"; chrX rmsk exon 26884027 26885674 31240 - . gene_id "PABLA_Xp21.3b"; transcript_id "PABLA_Xp21.3b"; locus "PABLA_Xp21.3b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0154"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "3288"; repStart "0"; chrX rmsk exon 26885675 26886324 5052 - . gene_id "PABLA_Xp21.3b"; transcript_id "PABLA_Xp21.3b"; locus "PABLA_Xp21.3b"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0154"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xp21.3a ### chrX rmsk gene 27072152 27076503 . - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3635"; model_cov "1551"; model_pct "27.4"; chrX rmsk exon 27072152 27072238 414 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "5250"; repFamily "ERVL"; repLeft "5159"; repStart "-417"; chrX rmsk exon 27073054 27073275 414 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "4935"; repStart "-509"; chrX rmsk exon 27073641 27073998 623 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "3834"; repFamily "ERVL"; repLeft "3490"; repStart "-1833"; chrX rmsk exon 27074529 27074727 293 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "3193"; repFamily "ERVL"; repLeft "2982"; repStart "-2474"; chrX rmsk exon 27074857 27074931 734 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "2472"; repFamily "ERVL"; repLeft "2398"; repStart "-3195"; chrX rmsk exon 27075917 27076503 734 - . gene_id "ERVLE_Xp21.3a"; transcript_id "ERVLE_Xp21.3a"; locus "ERVLE_Xp21.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3635"; repClass "LTR"; repEnd "2397"; repFamily "ERVL"; repLeft "1789"; repStart "-3270"; ### ERVLB4_Xp21.3a ### chrX rmsk gene 27145242 27146517 . + . gene_id "ERVLB4_Xp21.3a"; transcript_id "ERVLB4_Xp21.3a"; locus "ERVLB4_Xp21.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1772"; model_cov "1017"; model_pct "17.8"; chrX rmsk exon 27145242 27145701 1958 + . gene_id "ERVLB4_Xp21.3a"; transcript_id "ERVLB4_Xp21.3a"; locus "ERVLB4_Xp21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1772"; repClass "LTR"; repEnd "2202"; repFamily "ERVL"; repLeft "-3512"; repStart "1746"; chrX rmsk exon 27145986 27146517 1958 + . gene_id "ERVLB4_Xp21.3a"; transcript_id "ERVLB4_Xp21.3a"; locus "ERVLB4_Xp21.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1772"; repClass "LTR"; repEnd "2764"; repFamily "ERVL"; repLeft "-2950"; repStart "2203"; ### HERVH_Xp21.3a ### chrX rmsk gene 27286223 27294978 . - . gene_id "HERVH_Xp21.3a"; transcript_id "HERVH_Xp21.3a"; locus "HERVH_Xp21.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1226"; model_cov "7712"; model_pct "100.0"; chrX rmsk exon 27286223 27286647 2488 - . gene_id "HERVH_Xp21.3a"; transcript_id "HERVH_Xp21.3a"; locus "HERVH_Xp21.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1226"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 27286648 27294548 25315 - . gene_id "HERVH_Xp21.3a"; transcript_id "HERVH_Xp21.3a"; locus "HERVH_Xp21.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1226"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 27294550 27294978 2350 - . gene_id "HERVH_Xp21.3a"; transcript_id "HERVH_Xp21.3a"; locus "HERVH_Xp21.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1226"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_Xp21.3 ### chrX rmsk gene 27440273 27444796 . - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0373"; model_cov "914"; model_pct "17.5"; chrX rmsk exon 27440273 27440618 2190 - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0373"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "146"; repStart "0"; chrX rmsk exon 27440694 27441899 4346 - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0373"; repClass "LTR"; repEnd "4826"; repFamily "ERV1"; repLeft "4330"; repStart "-391"; chrX rmsk exon 27442901 27443372 4346 - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0373"; repClass "LTR"; repEnd "4329"; repFamily "ERV1"; repLeft "4059"; repStart "-888"; chrX rmsk exon 27443674 27443857 2114 - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0373"; repClass "LTR"; repEnd "-1128"; repFamily "ERV1"; repLeft "-1276"; repStart "-6345"; chrX rmsk exon 27444348 27444796 2568 - . gene_id "MER61_Xp21.3"; transcript_id "MER61_Xp21.3"; locus "MER61_Xp21.3"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0373"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### ERV316A3_Xp21.3b ### chrX rmsk gene 27554415 27555377 . + . gene_id "ERV316A3_Xp21.3b"; transcript_id "ERV316A3_Xp21.3b"; locus "ERV316A3_Xp21.3b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2760"; model_cov "974"; model_pct "18.6"; chrX rmsk exon 27554415 27555377 1242 + . gene_id "ERV316A3_Xp21.3b"; transcript_id "ERV316A3_Xp21.3b"; locus "ERV316A3_Xp21.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2760"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1408"; repStart "2844"; ### ERV316A3_Xp21.3c ### chrX rmsk gene 27557598 27561238 . - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2762"; model_cov "2636"; model_pct "50.4"; chrX rmsk exon 27557598 27557746 392 - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2762"; repClass "LTR"; repEnd "272"; repFamily "ERVL"; repLeft "115"; repStart "-179"; chrX rmsk exon 27557826 27558608 2122 - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2762"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4429"; repStart "0"; chrX rmsk exon 27558818 27558932 2122 - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2762"; repClass "LTR"; repEnd "4428"; repFamily "ERVL"; repLeft "4316"; repStart "-798"; chrX rmsk exon 27559224 27559986 4704 - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2762"; repClass "LTR"; repEnd "4318"; repFamily "ERVL"; repLeft "3589"; repStart "-908"; chrX rmsk exon 27560285 27561238 4704 - . gene_id "ERV316A3_Xp21.3c"; transcript_id "ERV316A3_Xp21.3c"; locus "ERV316A3_Xp21.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2762"; repClass "LTR"; repEnd "3588"; repFamily "ERVL"; repLeft "2590"; repStart "-1638"; ### ERV316A3_Xp21.3d ### chrX rmsk gene 27610593 27611356 . + . gene_id "ERV316A3_Xp21.3d"; transcript_id "ERV316A3_Xp21.3d"; locus "ERV316A3_Xp21.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2763"; model_cov "788"; model_pct "15.1"; chrX rmsk exon 27610593 27611356 1881 + . gene_id "ERV316A3_Xp21.3d"; transcript_id "ERV316A3_Xp21.3d"; locus "ERV316A3_Xp21.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2763"; repClass "LTR"; repEnd "2815"; repFamily "ERVL"; repLeft "-2411"; repStart "2027"; ### ERVLB4_Xp21.3b ### chrX rmsk gene 27675698 27676834 . + . gene_id "ERVLB4_Xp21.3b"; transcript_id "ERVLB4_Xp21.3b"; locus "ERVLB4_Xp21.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1773"; model_cov "594"; model_pct "10.4"; chrX rmsk exon 27675698 27675981 349 + . gene_id "ERVLB4_Xp21.3b"; transcript_id "ERVLB4_Xp21.3b"; locus "ERVLB4_Xp21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1773"; repClass "LTR"; repEnd "1605"; repFamily "ERVL"; repLeft "-4109"; repStart "1304"; chrX rmsk exon 27676539 27676619 270 + . gene_id "ERVLB4_Xp21.3b"; transcript_id "ERVLB4_Xp21.3b"; locus "ERVLB4_Xp21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1773"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "-3366"; repStart "2268"; chrX rmsk exon 27676621 27676834 638 + . gene_id "ERVLB4_Xp21.3b"; transcript_id "ERVLB4_Xp21.3b"; locus "ERVLB4_Xp21.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1773"; repClass "LTR"; repEnd "2581"; repFamily "ERVL"; repLeft "-3133"; repStart "2368"; ### ERVLE_Xp21.3b ### chrX rmsk gene 27679288 27679962 . - . gene_id "ERVLE_Xp21.3b"; transcript_id "ERVLE_Xp21.3b"; locus "ERVLE_Xp21.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3638"; model_cov "698"; model_pct "12.3"; chrX rmsk exon 27679288 27679962 1282 - . gene_id "ERVLE_Xp21.3b"; transcript_id "ERVLE_Xp21.3b"; locus "ERVLE_Xp21.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3638"; repClass "LTR"; repEnd "3595"; repFamily "ERVL"; repLeft "2897"; repStart "-2072"; ### HERVH_Xp21.3b ### chrX rmsk gene 28502595 28507894 . - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1227"; model_cov "4335"; model_pct "56.2"; chrX rmsk exon 28502595 28503021 2514 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chrX rmsk exon 28503022 28503539 3707 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7194"; repStart "0"; chrX rmsk exon 28503527 28503935 3017 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "5020"; repFamily "ERV1"; repLeft "4610"; repStart "-2693"; chrX rmsk exon 28504344 28504423 624 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "4312"; repFamily "ERV1"; repLeft "4233"; repStart "-3401"; chrX rmsk exon 28504414 28505368 6329 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "3616"; repFamily "ERV1"; repLeft "2673"; repStart "-4097"; chrX rmsk exon 28505364 28507461 10262 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "2385"; repFamily "ERV1"; repLeft "1"; repStart "-5328"; chrX rmsk exon 28507462 28507894 2309 - . gene_id "HERVH_Xp21.3b"; transcript_id "HERVH_Xp21.3b"; locus "HERVH_Xp21.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1227"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-21"; repStart "0"; ### ERV316A3_Xp21.3e ### chrX rmsk gene 28555315 28557109 . - . gene_id "ERV316A3_Xp21.3e"; transcript_id "ERV316A3_Xp21.3e"; locus "ERV316A3_Xp21.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2765"; model_cov "779"; model_pct "14.9"; chrX rmsk exon 28555315 28555869 1141 - . gene_id "ERV316A3_Xp21.3e"; transcript_id "ERV316A3_Xp21.3e"; locus "ERV316A3_Xp21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2765"; repClass "LTR"; repEnd "5084"; repFamily "ERVL"; repLeft "4548"; repStart "-142"; chrX rmsk exon 28556391 28556582 1944 - . gene_id "ERV316A3_Xp21.3e"; transcript_id "ERV316A3_Xp21.3e"; locus "ERV316A3_Xp21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2765"; repClass "LTR"; repEnd "4305"; repFamily "ERVL"; repLeft "4119"; repStart "-921"; chrX rmsk exon 28557045 28557109 1944 - . gene_id "ERV316A3_Xp21.3e"; transcript_id "ERV316A3_Xp21.3e"; locus "ERV316A3_Xp21.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2765"; repClass "LTR"; repEnd "4118"; repFamily "ERVL"; repLeft "4061"; repStart "-1108"; ### ERV316A3_Xp21.3f ### chrX rmsk gene 28559951 28560703 . - . gene_id "ERV316A3_Xp21.3f"; transcript_id "ERV316A3_Xp21.3f"; locus "ERV316A3_Xp21.3f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2766"; model_cov "763"; model_pct "14.6"; chrX rmsk exon 28559951 28560703 1944 - . gene_id "ERV316A3_Xp21.3f"; transcript_id "ERV316A3_Xp21.3f"; locus "ERV316A3_Xp21.3f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2766"; repClass "LTR"; repEnd "4060"; repFamily "ERVL"; repLeft "3297"; repStart "-1166"; ### HERVH_Xp21.3c ### chrX rmsk gene 28892120 28898168 . - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1229"; model_cov "5526"; model_pct "71.6"; chrX rmsk exon 28892120 28892574 3296 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 28892575 28892950 2334 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 28892951 28893149 1156 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 28893151 28894816 6547 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "4537"; repStart "-1394"; chrX rmsk exon 28894807 28894953 892 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 28894948 28897711 15205 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 28897714 28898168 3312 - . gene_id "HERVH_Xp21.3c"; transcript_id "HERVH_Xp21.3c"; locus "HERVH_Xp21.3c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1229"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xp21.2a ### chrX rmsk gene 29975546 29981247 . + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1230"; model_cov "4850"; model_pct "62.9"; chrX rmsk exon 29975546 29975946 2725 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 29975949 29976413 3040 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chrX rmsk exon 29976468 29978046 10316 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "2363"; repFamily "ERV1"; repLeft "-5350"; repStart "793"; chrX rmsk exon 29978042 29978758 4750 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "2297"; chrX rmsk exon 29978738 29979580 5540 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chrX rmsk exon 29979583 29980241 4449 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chrX rmsk exon 29980242 29980460 1332 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chrX rmsk exon 29980459 29980837 2490 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 29980840 29981247 2621 + . gene_id "HERVH_Xp21.2a"; transcript_id "HERVH_Xp21.2a"; locus "HERVH_Xp21.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1230"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "3"; ### HERVH_Xp21.2b ### chrX rmsk gene 30103613 30109253 . + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1231"; model_cov "4794"; model_pct "62.2"; chrX rmsk exon 30103613 30104012 2624 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 30104015 30104483 3044 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chrX rmsk exon 30104538 30106763 15182 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "793"; chrX rmsk exon 30106743 30107591 5862 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chrX rmsk exon 30107594 30108256 4388 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 30108237 30108466 1328 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5588"; chrX rmsk exon 30108467 30108843 2487 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 30108844 30109253 2767 + . gene_id "HERVH_Xp21.2b"; transcript_id "HERVH_Xp21.2b"; locus "HERVH_Xp21.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1231"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_Xp21.2c ### chrX rmsk gene 30448932 30454861 . - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1232"; model_cov "5122"; model_pct "66.4"; chrX rmsk exon 30448932 30449341 2823 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 30449342 30449717 2253 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 30449718 30449934 1344 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 30449936 30450598 4211 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 30450601 30451458 5478 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3126"; repStart "-3720"; chrX rmsk exon 30451431 30454398 19704 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 30454401 30454861 2961 - . gene_id "HERVH_Xp21.2c"; transcript_id "HERVH_Xp21.2c"; locus "HERVH_Xp21.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1232"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_Xp21.2 ### chrX rmsk gene 30910129 30913573 . + . gene_id "ERV316A3_Xp21.2"; transcript_id "ERV316A3_Xp21.2"; locus "ERV316A3_Xp21.2"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2767"; model_cov "3028"; model_pct "57.9"; chrX rmsk exon 30910129 30910595 1136 + . gene_id "ERV316A3_Xp21.2"; transcript_id "ERV316A3_Xp21.2"; locus "ERV316A3_Xp21.2"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2767"; repClass "LTR"; repEnd "422"; repFamily "ERVL"; repLeft "0"; repStart "-57"; chrX rmsk exon 30910599 30913573 6135 + . gene_id "ERV316A3_Xp21.2"; transcript_id "ERV316A3_Xp21.2"; locus "ERV316A3_Xp21.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2767"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "-2190"; repStart "8"; ### ERVLE_Xp21.2a ### chrX rmsk gene 30957858 30959238 . - . gene_id "ERVLE_Xp21.2a"; transcript_id "ERVLE_Xp21.2a"; locus "ERVLE_Xp21.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3640"; model_cov "1038"; model_pct "18.3"; chrX rmsk exon 30957858 30958211 592 - . gene_id "ERVLE_Xp21.2a"; transcript_id "ERVLE_Xp21.2a"; locus "ERVLE_Xp21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3640"; repClass "LTR"; repEnd "1499"; repFamily "ERVL"; repLeft "1130"; repStart "-4168"; chrX rmsk exon 30958588 30959238 592 - . gene_id "ERVLE_Xp21.2a"; transcript_id "ERVLE_Xp21.2a"; locus "ERVLE_Xp21.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3640"; repClass "LTR"; repEnd "711"; repFamily "ERVL"; repLeft "42"; repStart "-4956"; ### ERVLE_Xp21.2b ### chrX rmsk gene 30961544 30963453 . - . gene_id "ERVLE_Xp21.2b"; transcript_id "ERVLE_Xp21.2b"; locus "ERVLE_Xp21.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3641"; model_cov "1762"; model_pct "31.1"; chrX rmsk exon 30961544 30962315 1854 - . gene_id "ERVLE_Xp21.2b"; transcript_id "ERVLE_Xp21.2b"; locus "ERVLE_Xp21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3641"; repClass "LTR"; repEnd "4025"; repFamily "ERVL"; repLeft "3213"; repStart "-1642"; chrX rmsk exon 30962532 30963453 2727 - . gene_id "ERVLE_Xp21.2b"; transcript_id "ERVLE_Xp21.2b"; locus "ERVLE_Xp21.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3641"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "1949"; repStart "-2768"; ### HERVH_Xp21.2d ### chrX rmsk gene 31377722 31383370 . + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1233"; model_cov "5108"; model_pct "66.2"; chrX rmsk exon 31377722 31378171 3454 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 31378174 31380903 14015 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 31380898 31381749 5642 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chrX rmsk exon 31381752 31382328 1897 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 31382330 31382541 1318 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 31382542 31382917 2253 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 31382918 31383370 3302 + . gene_id "HERVH_Xp21.2d"; transcript_id "HERVH_Xp21.2d"; locus "HERVH_Xp21.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1233"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_Xp21.1a ### chrX rmsk gene 32288683 32289963 . + . gene_id "MER41_Xp21.1a"; transcript_id "MER41_Xp21.1a"; locus "MER41_Xp21.1a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0560"; model_cov "741"; model_pct "12.5"; chrX rmsk exon 32288683 32289417 4871 + . gene_id "MER41_Xp21.1a"; transcript_id "MER41_Xp21.1a"; locus "MER41_Xp21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0560"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "5205"; chrX rmsk exon 32289418 32289963 3901 + . gene_id "MER41_Xp21.1a"; transcript_id "MER41_Xp21.1a"; locus "MER41_Xp21.1a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0560"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### HUERSP1_Xp21.1a ### chrX rmsk gene 33076745 33080349 . - . gene_id "HUERSP1_Xp21.1a"; transcript_id "HUERSP1_Xp21.1a"; locus "HUERSP1_Xp21.1a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0215"; model_cov "2690"; model_pct "43.0"; chrX rmsk exon 33076745 33077419 5164 - . gene_id "HUERSP1_Xp21.1a"; transcript_id "HUERSP1_Xp21.1a"; locus "HUERSP1_Xp21.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0215"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 33077420 33079038 45011 - . gene_id "HUERSP1_Xp21.1a"; transcript_id "HUERSP1_Xp21.1a"; locus "HUERSP1_Xp21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0215"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "4649"; repStart "0"; chrX rmsk exon 33079312 33080349 45011 - . gene_id "HUERSP1_Xp21.1a"; transcript_id "HUERSP1_Xp21.1a"; locus "HUERSP1_Xp21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0215"; repClass "LTR"; repEnd "4648"; repFamily "ERV1"; repLeft "3572"; repStart "-1615"; ### HUERSP1_Xp21.1b ### chrX rmsk gene 33080387 33084921 . - . gene_id "HUERSP1_Xp21.1b"; transcript_id "HUERSP1_Xp21.1b"; locus "HUERSP1_Xp21.1b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0216"; model_cov "3568"; model_pct "57.0"; chrX rmsk exon 33080387 33080974 45011 - . gene_id "HUERSP1_Xp21.1b"; transcript_id "HUERSP1_Xp21.1b"; locus "HUERSP1_Xp21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0216"; repClass "LTR"; repEnd "4648"; repFamily "ERV1"; repLeft "4037"; repStart "-1615"; chrX rmsk exon 33081009 33081261 45011 - . gene_id "HUERSP1_Xp21.1b"; transcript_id "HUERSP1_Xp21.1b"; locus "HUERSP1_Xp21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0216"; repClass "LTR"; repEnd "2959"; repFamily "ERV1"; repLeft "2697"; repStart "-3304"; chrX rmsk exon 33081589 33084276 45011 - . gene_id "HUERSP1_Xp21.1b"; transcript_id "HUERSP1_Xp21.1b"; locus "HUERSP1_Xp21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0216"; repClass "LTR"; repEnd "2696"; repFamily "ERV1"; repLeft "1"; repStart "-3567"; chrX rmsk exon 33084277 33084921 4628 - . gene_id "HUERSP1_Xp21.1b"; transcript_id "HUERSP1_Xp21.1b"; locus "HUERSP1_Xp21.1b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0216"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_Xp21.1 ### chrX rmsk gene 33907492 33909753 . + . gene_id "MER101_Xp21.1"; transcript_id "MER101_Xp21.1"; locus "MER101_Xp21.1"; category "internal"; intModel "MER101-int"; locid "MER101-int_0424"; model_cov "939"; model_pct "14.1"; chrX rmsk exon 33907492 33907803 1272 + . gene_id "MER101_Xp21.1"; transcript_id "MER101_Xp21.1"; locus "MER101_Xp21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0424"; repClass "LTR"; repEnd "1678"; repFamily "ERV1"; repLeft "-4961"; repStart "1366"; chrX rmsk exon 33908660 33908803 1272 + . gene_id "MER101_Xp21.1"; transcript_id "MER101_Xp21.1"; locus "MER101_Xp21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0424"; repClass "LTR"; repEnd "1845"; repFamily "ERV1"; repLeft "-4794"; repStart "1679"; chrX rmsk exon 33909263 33909753 1272 + . gene_id "MER101_Xp21.1"; transcript_id "MER101_Xp21.1"; locus "MER101_Xp21.1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0424"; repClass "LTR"; repEnd "2307"; repFamily "ERV1"; repLeft "-4332"; repStart "1846"; ### PABLB_Xp21.1a ### chrX rmsk gene 33909958 33914944 . + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; category "prototype"; intModel "PABL_B-int"; locid "PABL_B-int_0102"; model_cov "4049"; model_pct "56.9"; chrX rmsk exon 33909958 33910470 1088 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 33910471 33911517 1679 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "1239"; repFamily "ERV1"; repLeft "-5883"; repStart "2"; chrX rmsk exon 33911629 33913002 6779 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "4061"; repFamily "ERV1"; repLeft "-3061"; repStart "2690"; chrX rmsk exon 33912999 33913896 2445 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "5886"; repFamily "ERV1"; repLeft "-1236"; repStart "4926"; chrX rmsk exon 33913921 33914432 1844 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "0"; repStart "6641"; chrX rmsk exon 33914433 33914641 481 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "206"; repFamily "ERV1"; repLeft "-461"; repStart "1"; chrX rmsk exon 33914773 33914944 949 + . gene_id "PABLB_Xp21.1a"; transcript_id "PABLB_Xp21.1a"; locus "PABLB_Xp21.1a"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0102"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "0"; repStart "494"; ### HERVFRD_Xp21.1 ### chrX rmsk gene 33918528 33924823 . - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0190"; model_cov "2169"; model_pct "30.1"; chrX rmsk exon 33918528 33918979 3687 - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0190"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "236"; repStart "0"; chrX rmsk exon 33919459 33919694 3687 - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0190"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "1"; repStart "-462"; chrX rmsk exon 33919695 33920162 1985 - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0190"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "6815"; repStart "-9"; chrX rmsk exon 33922402 33924104 5397 - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0190"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "4"; repStart "-5413"; chrX rmsk exon 33924154 33924823 3274 - . gene_id "HERVFRD_Xp21.1"; transcript_id "HERVFRD_Xp21.1"; locus "HERVFRD_Xp21.1"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0190"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_Xp21.1b ### chrX rmsk gene 33920155 33922112 . - . gene_id "MER41_Xp21.1b"; transcript_id "MER41_Xp21.1b"; locus "MER41_Xp21.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0561"; model_cov "2027"; model_pct "34.1"; chrX rmsk exon 33920155 33921519 8940 - . gene_id "MER41_Xp21.1b"; transcript_id "MER41_Xp21.1b"; locus "MER41_Xp21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0561"; repClass "LTR"; repEnd "5549"; repFamily "ERV1"; repLeft "4164"; repStart "-397"; chrX rmsk exon 33921520 33922112 2755 - . gene_id "MER41_Xp21.1b"; transcript_id "MER41_Xp21.1b"; locus "MER41_Xp21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0561"; repClass "LTR"; repEnd "2944"; repFamily "ERV1"; repLeft "2302"; repStart "-3002"; ### ERVLB4_Xp21.1a ### chrX rmsk gene 34013575 34015193 . - . gene_id "ERVLB4_Xp21.1a"; transcript_id "ERVLB4_Xp21.1a"; locus "ERVLB4_Xp21.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1774"; model_cov "1645"; model_pct "28.8"; chrX rmsk exon 34013575 34015193 9536 - . gene_id "ERVLB4_Xp21.1a"; transcript_id "ERVLB4_Xp21.1a"; locus "ERVLB4_Xp21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1774"; repClass "LTR"; repEnd "4330"; repFamily "ERVL"; repLeft "2685"; repStart "-1384"; ### ERV316A3_Xp21.1a ### chrX rmsk gene 34047979 34048914 . + . gene_id "ERV316A3_Xp21.1a"; transcript_id "ERV316A3_Xp21.1a"; locus "ERV316A3_Xp21.1a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2768"; model_cov "947"; model_pct "18.1"; chrX rmsk exon 34047979 34048914 1848 + . gene_id "ERV316A3_Xp21.1a"; transcript_id "ERV316A3_Xp21.1a"; locus "ERV316A3_Xp21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2768"; repClass "LTR"; repEnd "1654"; repFamily "ERVL"; repLeft "-3572"; repStart "707"; ### ERV316A3_Xp21.1b ### chrX rmsk gene 34050422 34052124 . + . gene_id "ERV316A3_Xp21.1b"; transcript_id "ERV316A3_Xp21.1b"; locus "ERV316A3_Xp21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2770"; model_cov "750"; model_pct "14.4"; chrX rmsk exon 34050422 34050641 449 + . gene_id "ERV316A3_Xp21.1b"; transcript_id "ERV316A3_Xp21.1b"; locus "ERV316A3_Xp21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2770"; repClass "LTR"; repEnd "2480"; repFamily "ERVL"; repLeft "-2746"; repStart "2269"; chrX rmsk exon 34051017 34051560 1262 + . gene_id "ERV316A3_Xp21.1b"; transcript_id "ERV316A3_Xp21.1b"; locus "ERV316A3_Xp21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2770"; repClass "LTR"; repEnd "5149"; repFamily "ERVL"; repLeft "-77"; repStart "4610"; chrX rmsk exon 34051648 34052124 950 + . gene_id "ERV316A3_Xp21.1b"; transcript_id "ERV316A3_Xp21.1b"; locus "ERV316A3_Xp21.1b"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2770"; repClass "LTR"; repEnd "455"; repFamily "ERVL"; repLeft "-1"; repStart "5"; ### MER61_Xp21.1a ### chrX rmsk gene 34053673 34058606 . + . gene_id "MER61_Xp21.1a"; transcript_id "MER61_Xp21.1a"; locus "MER61_Xp21.1a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0375"; model_cov "4382"; model_pct "84.0"; chrX rmsk exon 34053673 34054003 1780 + . gene_id "MER61_Xp21.1a"; transcript_id "MER61_Xp21.1a"; locus "MER61_Xp21.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0375"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 34054006 34054507 1475 + . gene_id "MER61_Xp21.1a"; transcript_id "MER61_Xp21.1a"; locus "MER61_Xp21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0375"; repClass "LTR"; repEnd "567"; repFamily "ERV1"; repLeft "-4650"; repStart "3"; chrX rmsk exon 34054491 34058277 19798 + . gene_id "MER61_Xp21.1a"; transcript_id "MER61_Xp21.1a"; locus "MER61_Xp21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0375"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1399"; chrX rmsk exon 34058279 34058606 1617 + . gene_id "MER61_Xp21.1a"; transcript_id "MER61_Xp21.1a"; locus "MER61_Xp21.1a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0375"; repClass "LTR"; repEnd "339"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### ERVLB4_Xp21.1b ### chrX rmsk gene 34073764 34077741 . + . gene_id "ERVLB4_Xp21.1b"; transcript_id "ERVLB4_Xp21.1b"; locus "ERVLB4_Xp21.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1775"; model_cov "3699"; model_pct "64.7"; chrX rmsk exon 34073764 34076287 12824 + . gene_id "ERVLB4_Xp21.1b"; transcript_id "ERVLB4_Xp21.1b"; locus "ERVLB4_Xp21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1775"; repClass "LTR"; repEnd "4357"; repFamily "ERVL"; repLeft "-1357"; repStart "1771"; chrX rmsk exon 34076638 34077741 5020 + . gene_id "ERVLB4_Xp21.1b"; transcript_id "ERVLB4_Xp21.1b"; locus "ERVLB4_Xp21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1775"; repClass "LTR"; repEnd "5462"; repFamily "ERVL"; repLeft "-252"; repStart "4349"; ### ERVLE_Xp21.1a ### chrX rmsk gene 34236588 34240023 . + . gene_id "ERVLE_Xp21.1a"; transcript_id "ERVLE_Xp21.1a"; locus "ERVLE_Xp21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3643"; model_cov "2377"; model_pct "41.9"; chrX rmsk exon 34236588 34237583 1308 + . gene_id "ERVLE_Xp21.1a"; transcript_id "ERVLE_Xp21.1a"; locus "ERVLE_Xp21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3643"; repClass "LTR"; repEnd "1283"; repFamily "ERVL"; repLeft "-4384"; repStart "282"; chrX rmsk exon 34238812 34240023 1284 + . gene_id "ERVLE_Xp21.1a"; transcript_id "ERVLE_Xp21.1a"; locus "ERVLE_Xp21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3643"; repClass "LTR"; repEnd "2719"; repFamily "ERVL"; repLeft "-2948"; repStart "1343"; ### ERVLE_Xp21.1b ### chrX rmsk gene 34306604 34309720 . + . gene_id "ERVLE_Xp21.1b"; transcript_id "ERVLE_Xp21.1b"; locus "ERVLE_Xp21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3644"; model_cov "1380"; model_pct "24.4"; chrX rmsk exon 34306604 34306985 577 + . gene_id "ERVLE_Xp21.1b"; transcript_id "ERVLE_Xp21.1b"; locus "ERVLE_Xp21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3644"; repClass "LTR"; repEnd "658"; repFamily "ERVL"; repLeft "-5009"; repStart "277"; chrX rmsk exon 34307976 34308321 1523 + . gene_id "ERVLE_Xp21.1b"; transcript_id "ERVLE_Xp21.1b"; locus "ERVLE_Xp21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3644"; repClass "LTR"; repEnd "2151"; repFamily "ERVL"; repLeft "-3516"; repStart "1776"; chrX rmsk exon 34309080 34309720 1523 + . gene_id "ERVLE_Xp21.1b"; transcript_id "ERVLE_Xp21.1b"; locus "ERVLE_Xp21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3644"; repClass "LTR"; repEnd "2776"; repFamily "ERVL"; repLeft "-2891"; repStart "2152"; ### MER41_Xp21.1c ### chrX rmsk gene 34549437 34550682 . + . gene_id "MER41_Xp21.1c"; transcript_id "MER41_Xp21.1c"; locus "MER41_Xp21.1c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0562"; model_cov "1262"; model_pct "21.2"; chrX rmsk exon 34549437 34550682 7605 + . gene_id "MER41_Xp21.1c"; transcript_id "MER41_Xp21.1c"; locus "MER41_Xp21.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0562"; repClass "LTR"; repEnd "1623"; repFamily "ERV1"; repLeft "-4323"; repStart "361"; ### MER61_Xp21.1b ### chrX rmsk gene 34559247 34561452 . - . gene_id "MER61_Xp21.1b"; transcript_id "MER61_Xp21.1b"; locus "MER61_Xp21.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0376"; model_cov "1703"; model_pct "32.6"; chrX rmsk exon 34559247 34559722 1397 - . gene_id "MER61_Xp21.1b"; transcript_id "MER61_Xp21.1b"; locus "MER61_Xp21.1b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0376"; repClass "LTR"; repEnd "414"; repFamily "ERV1"; repLeft "-68"; repStart "-13"; chrX rmsk exon 34559723 34561452 10481 - . gene_id "MER61_Xp21.1b"; transcript_id "MER61_Xp21.1b"; locus "MER61_Xp21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0376"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "3509"; repStart "-5"; ### HERVK11_Xp21.1 ### chrX rmsk gene 34796024 34803445 . + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0105"; model_cov "5579"; model_pct "70.1"; chrX rmsk exon 34796024 34797079 6581 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 34797080 34797400 2165 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "-7634"; repStart "1"; chrX rmsk exon 34797398 34797989 2157 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "872"; repFamily "ERVK"; repLeft "-7081"; repStart "206"; chrX rmsk exon 34797965 34798547 3018 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "-6368"; repStart "1165"; chrX rmsk exon 34798540 34800226 13395 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "2912"; chrX rmsk exon 34800218 34802388 9051 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5467"; chrX rmsk exon 34802390 34803445 6606 + . gene_id "HERVK11_Xp21.1"; transcript_id "HERVK11_Xp21.1"; locus "HERVK11_Xp21.1"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0105"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### PRIMA41_Xp21.1 ### chrX rmsk gene 34983864 34991714 . - . gene_id "PRIMA41_Xp21.1"; transcript_id "PRIMA41_Xp21.1"; locus "PRIMA41_Xp21.1"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0167"; model_cov "6680"; model_pct "86.1"; chrX rmsk exon 34983864 34986249 37935 - . gene_id "PRIMA41_Xp21.1"; transcript_id "PRIMA41_Xp21.1"; locus "PRIMA41_Xp21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0167"; repClass "LTR"; repEnd "6683"; repFamily "ERV1"; repLeft "4209"; repStart "-1073"; chrX rmsk exon 34986562 34989879 37935 - . gene_id "PRIMA41_Xp21.1"; transcript_id "PRIMA41_Xp21.1"; locus "PRIMA41_Xp21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0167"; repClass "LTR"; repEnd "4208"; repFamily "ERV1"; repLeft "891"; repStart "-3548"; chrX rmsk exon 34990208 34991186 37935 - . gene_id "PRIMA41_Xp21.1"; transcript_id "PRIMA41_Xp21.1"; locus "PRIMA41_Xp21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0167"; repClass "LTR"; repEnd "890"; repFamily "ERV1"; repLeft "1"; repStart "-6866"; chrX rmsk exon 34991187 34991714 3169 - . gene_id "PRIMA41_Xp21.1"; transcript_id "PRIMA41_Xp21.1"; locus "PRIMA41_Xp21.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0167"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_Xp21.1c ### chrX rmsk gene 35142752 35144483 . - . gene_id "ERV316A3_Xp21.1c"; transcript_id "ERV316A3_Xp21.1c"; locus "ERV316A3_Xp21.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2771"; model_cov "1731"; model_pct "33.1"; chrX rmsk exon 35142752 35144483 2605 - . gene_id "ERV316A3_Xp21.1c"; transcript_id "ERV316A3_Xp21.1c"; locus "ERV316A3_Xp21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2771"; repClass "LTR"; repEnd "4915"; repFamily "ERVL"; repLeft "3184"; repStart "-311"; ### MER61_Xp21.1c ### chrX rmsk gene 35272597 35276627 . - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0377"; model_cov "4878"; model_pct "93.5"; chrX rmsk exon 35272597 35275598 11724 - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0377"; repClass "LTR"; repEnd "4784"; repFamily "ERV1"; repLeft "801"; repStart "-433"; chrX rmsk exon 35275575 35275864 1253 - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0377"; repClass "LTR"; repEnd "1621"; repFamily "ERV1"; repLeft "1320"; repStart "-3596"; chrX rmsk exon 35275858 35275905 304 - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0377"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "731"; repStart "-4440"; chrX rmsk exon 35275973 35276471 1972 - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0377"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "1"; repStart "-4668"; chrX rmsk exon 35276472 35276627 863 - . gene_id "MER61_Xp21.1c"; transcript_id "MER61_Xp21.1c"; locus "MER61_Xp21.1c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0377"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "193"; repStart "0"; ### ERVLE_Xp21.1c ### chrX rmsk gene 35392346 35394210 . + . gene_id "ERVLE_Xp21.1c"; transcript_id "ERVLE_Xp21.1c"; locus "ERVLE_Xp21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3646"; model_cov "1532"; model_pct "27.0"; chrX rmsk exon 35392346 35393769 2565 + . gene_id "ERVLE_Xp21.1c"; transcript_id "ERVLE_Xp21.1c"; locus "ERVLE_Xp21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3646"; repClass "LTR"; repEnd "5538"; repFamily "ERVL"; repLeft "-129"; repStart "4132"; chrX rmsk exon 35394083 35394210 2565 + . gene_id "ERVLE_Xp21.1c"; transcript_id "ERVLE_Xp21.1c"; locus "ERVLE_Xp21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3646"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "-2"; repStart "5539"; ### MER4B_Xp21.1a ### chrX rmsk gene 35433071 35442339 . - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0481"; model_cov "5844"; model_pct "86.5"; chrX rmsk exon 35433071 35433174 2134 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "317"; repFamily "ERV1"; repLeft "215"; repStart "-293"; chrX rmsk exon 35433507 35433715 2134 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "2"; repStart "-396"; chrX rmsk exon 35433716 35435396 10682 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5010"; repStart "0"; chrX rmsk exon 35435394 35437391 14945 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "4482"; repFamily "ERV1"; repLeft "2406"; repStart "-2276"; chrX rmsk exon 35437669 35438849 14945 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "2405"; repFamily "ERV1"; repLeft "1164"; repStart "-4353"; chrX rmsk exon 35439552 35439951 1860 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "1165"; repFamily "ERV1"; repLeft "757"; repStart "-5593"; chrX rmsk exon 35440554 35440919 2063 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "754"; repFamily "ERV1"; repLeft "383"; repStart "-6004"; chrX rmsk exon 35441817 35442339 3395 - . gene_id "MER4B_Xp21.1a"; transcript_id "MER4B_Xp21.1a"; locus "MER4B_Xp21.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0481"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "98"; repStart "0"; ### MER4_Xp21.1a ### chrX rmsk gene 35440934 35442339 . - . gene_id "MER4_Xp21.1a"; transcript_id "MER4_Xp21.1a"; locus "MER4_Xp21.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0815"; model_cov "958"; model_pct "14.5"; chrX rmsk exon 35440934 35441102 727 - . gene_id "MER4_Xp21.1a"; transcript_id "MER4_Xp21.1a"; locus "MER4_Xp21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0815"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "1265"; repStart "-5159"; chrX rmsk exon 35441161 35441264 463 - . gene_id "MER4_Xp21.1a"; transcript_id "MER4_Xp21.1a"; locus "MER4_Xp21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0815"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-739"; repStart "-7237"; chrX rmsk exon 35441233 35441812 2562 - . gene_id "MER4_Xp21.1a"; transcript_id "MER4_Xp21.1a"; locus "MER4_Xp21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0815"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "2"; repStart "-5912"; chrX rmsk exon 35441817 35442339 3395 - . gene_id "MER4_Xp21.1a"; transcript_id "MER4_Xp21.1a"; locus "MER4_Xp21.1a"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0815"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "98"; repStart "0"; ### HERVH_Xp21.1a ### chrX rmsk gene 35609422 35612530 . + . gene_id "HERVH_Xp21.1a"; transcript_id "HERVH_Xp21.1a"; locus "HERVH_Xp21.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1234"; model_cov "2526"; model_pct "32.7"; chrX rmsk exon 35609422 35609792 1969 + . gene_id "HERVH_Xp21.1a"; transcript_id "HERVH_Xp21.1a"; locus "HERVH_Xp21.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1234"; repClass "LTR"; repEnd "430"; repFamily "ERV1"; repLeft "-34"; repStart "23"; chrX rmsk exon 35609806 35610222 1725 + . gene_id "HERVH_Xp21.1a"; transcript_id "HERVH_Xp21.1a"; locus "HERVH_Xp21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1234"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chrX rmsk exon 35610281 35612530 6231 + . gene_id "HERVH_Xp21.1a"; transcript_id "HERVH_Xp21.1a"; locus "HERVH_Xp21.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1234"; repClass "LTR"; repEnd "2658"; repFamily "ERV1"; repLeft "-5055"; repStart "590"; ### ERVLB4_Xp21.1c ### chrX rmsk gene 35749571 35751602 . - . gene_id "ERVLB4_Xp21.1c"; transcript_id "ERVLB4_Xp21.1c"; locus "ERVLB4_Xp21.1c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1778"; model_cov "1914"; model_pct "33.5"; chrX rmsk exon 35749571 35749808 1013 - . gene_id "ERVLB4_Xp21.1c"; transcript_id "ERVLB4_Xp21.1c"; locus "ERVLB4_Xp21.1c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1778"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "251"; repStart "-2"; chrX rmsk exon 35749809 35751602 7360 - . gene_id "ERVLB4_Xp21.1c"; transcript_id "ERVLB4_Xp21.1c"; locus "ERVLB4_Xp21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1778"; repClass "LTR"; repEnd "2802"; repFamily "ERVL"; repLeft "888"; repStart "-2912"; ### MER4B_Xp21.1b ### chrX rmsk gene 35771827 35779150 . - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0482"; model_cov "5641"; model_pct "83.5"; chrX rmsk exon 35771827 35771872 3410 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "564"; repStart "0"; chrX rmsk exon 35771901 35772436 3410 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "2"; repStart "-47"; chrX rmsk exon 35772437 35773464 5814 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5737"; repStart "0"; chrX rmsk exon 35773824 35774309 2851 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "5489"; repFamily "ERV1"; repLeft "5013"; repStart "-1269"; chrX rmsk exon 35774312 35774476 968 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "4480"; repFamily "ERV1"; repLeft "4321"; repStart "-2278"; chrX rmsk exon 35774481 35775591 14243 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "2736"; repStart "-2572"; chrX rmsk exon 35775888 35777511 14243 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "2735"; repFamily "ERV1"; repLeft "1069"; repStart "-4023"; chrX rmsk exon 35777954 35778704 9540 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "1068"; repFamily "ERV1"; repLeft "348"; repStart "-5690"; chrX rmsk exon 35779004 35779150 9540 - . gene_id "MER4B_Xp21.1b"; transcript_id "MER4B_Xp21.1b"; locus "MER4B_Xp21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0482"; repClass "LTR"; repEnd "347"; repFamily "ERV1"; repLeft "198"; repStart "-6411"; ### MER4_Xp21.1b ### chrX rmsk gene 35779172 35780871 . - . gene_id "MER4_Xp21.1b"; transcript_id "MER4_Xp21.1b"; locus "MER4_Xp21.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0816"; model_cov "1074"; model_pct "16.3"; chrX rmsk exon 35779172 35779507 1154 - . gene_id "MER4_Xp21.1b"; transcript_id "MER4_Xp21.1b"; locus "MER4_Xp21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0816"; repClass "LTR"; repEnd "2434"; repFamily "ERV1"; repLeft "2128"; repStart "-4164"; chrX rmsk exon 35779638 35779722 405 - . gene_id "MER4_Xp21.1b"; transcript_id "MER4_Xp21.1b"; locus "MER4_Xp21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0816"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 35779710 35780282 2204 - . gene_id "MER4_Xp21.1b"; transcript_id "MER4_Xp21.1b"; locus "MER4_Xp21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0816"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chrX rmsk exon 35780286 35780871 3794 - . gene_id "MER4_Xp21.1b"; transcript_id "MER4_Xp21.1b"; locus "MER4_Xp21.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0816"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xp21.1d ### chrX rmsk gene 35891788 35892375 . + . gene_id "ERVLE_Xp21.1d"; transcript_id "ERVLE_Xp21.1d"; locus "ERVLE_Xp21.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3647"; model_cov "607"; model_pct "10.7"; chrX rmsk exon 35891788 35892375 1079 + . gene_id "ERVLE_Xp21.1d"; transcript_id "ERVLE_Xp21.1d"; locus "ERVLE_Xp21.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3647"; repClass "LTR"; repEnd "611"; repFamily "ERVL"; repLeft "-5056"; repStart "4"; ### ERV316A3_Xp21.1d ### chrX rmsk gene 36566942 36570779 . - . gene_id "ERV316A3_Xp21.1d"; transcript_id "ERV316A3_Xp21.1d"; locus "ERV316A3_Xp21.1d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2772"; model_cov "2351"; model_pct "45.0"; chrX rmsk exon 36566942 36568119 2591 - . gene_id "ERV316A3_Xp21.1d"; transcript_id "ERV316A3_Xp21.1d"; locus "ERV316A3_Xp21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2772"; repClass "LTR"; repEnd "2807"; repFamily "ERVL"; repLeft "1446"; repStart "-2419"; chrX rmsk exon 36568830 36569370 1281 - . gene_id "ERV316A3_Xp21.1d"; transcript_id "ERV316A3_Xp21.1d"; locus "ERV316A3_Xp21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2772"; repClass "LTR"; repEnd "1710"; repFamily "ERVL"; repLeft "1181"; repStart "-3516"; chrX rmsk exon 36570322 36570779 1096 - . gene_id "ERV316A3_Xp21.1d"; transcript_id "ERV316A3_Xp21.1d"; locus "ERV316A3_Xp21.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2772"; repClass "LTR"; repEnd "1254"; repFamily "ERVL"; repLeft "793"; repStart "-3972"; ### ERV316A3_Xp21.1e ### chrX rmsk gene 36638915 36640294 . + . gene_id "ERV316A3_Xp21.1e"; transcript_id "ERV316A3_Xp21.1e"; locus "ERV316A3_Xp21.1e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2773"; model_cov "1382"; model_pct "26.4"; chrX rmsk exon 36638915 36640294 3099 + . gene_id "ERV316A3_Xp21.1e"; transcript_id "ERV316A3_Xp21.1e"; locus "ERV316A3_Xp21.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2773"; repClass "LTR"; repEnd "4898"; repFamily "ERVL"; repLeft "-328"; repStart "3516"; ### MER61_Xp21.1d ### chrX rmsk gene 36997867 36999461 . + . gene_id "MER61_Xp21.1d"; transcript_id "MER61_Xp21.1d"; locus "MER61_Xp21.1d"; category "internal"; intModel "MER61-int"; locid "MER61-int_0378"; model_cov "1623"; model_pct "31.1"; chrX rmsk exon 36997867 36999461 10473 + . gene_id "MER61_Xp21.1d"; transcript_id "MER61_Xp21.1d"; locus "MER61_Xp21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0378"; repClass "LTR"; repEnd "4972"; repFamily "ERV1"; repLeft "-245"; repStart "3349"; ### MER61_Xp21.1e ### chrX rmsk gene 36999625 37000581 . + . gene_id "MER61_Xp21.1e"; transcript_id "MER61_Xp21.1e"; locus "MER61_Xp21.1e"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0379"; model_cov "673"; model_pct "12.9"; chrX rmsk exon 36999625 37000000 2081 + . gene_id "MER61_Xp21.1e"; transcript_id "MER61_Xp21.1e"; locus "MER61_Xp21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0379"; repClass "LTR"; repEnd "4957"; repFamily "ERV1"; repLeft "-260"; repStart "4543"; chrX rmsk exon 37000001 37000250 1589 + . gene_id "MER61_Xp21.1e"; transcript_id "MER61_Xp21.1e"; locus "MER61_Xp21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0379"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4958"; chrX rmsk exon 37000251 37000581 1826 + . gene_id "MER61_Xp21.1e"; transcript_id "MER61_Xp21.1e"; locus "MER61_Xp21.1e"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0379"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xp21.1b ### chrX rmsk gene 37458430 37461248 . - . gene_id "HERVH_Xp21.1b"; transcript_id "HERVH_Xp21.1b"; locus "HERVH_Xp21.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1235"; model_cov "2660"; model_pct "34.5"; chrX rmsk exon 37458430 37460859 11889 - . gene_id "HERVH_Xp21.1b"; transcript_id "HERVH_Xp21.1b"; locus "HERVH_Xp21.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1235"; repClass "LTR"; repEnd "2661"; repFamily "ERV1"; repLeft "1"; repStart "-5052"; chrX rmsk exon 37460860 37461248 2645 - . gene_id "HERVH_Xp21.1b"; transcript_id "HERVH_Xp21.1b"; locus "HERVH_Xp21.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1235"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xp21.1d ### chrX rmsk gene 37461988 37465035 . - . gene_id "ERVLB4_Xp21.1d"; transcript_id "ERVLB4_Xp21.1d"; locus "ERVLB4_Xp21.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1780"; model_cov "3150"; model_pct "55.1"; chrX rmsk exon 37461988 37465035 19060 - . gene_id "ERVLB4_Xp21.1d"; transcript_id "ERVLB4_Xp21.1d"; locus "ERVLB4_Xp21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1780"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "2564"; repStart "0"; ### PABLB_Xp21.1b ### chrX rmsk gene 37466596 37469950 . + . gene_id "PABLB_Xp21.1b"; transcript_id "PABLB_Xp21.1b"; locus "PABLB_Xp21.1b"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0103"; model_cov "2595"; model_pct "36.4"; chrX rmsk exon 37466596 37467255 1032 + . gene_id "PABLB_Xp21.1b"; transcript_id "PABLB_Xp21.1b"; locus "PABLB_Xp21.1b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0103"; repClass "LTR"; repEnd "1045"; repFamily "ERV1"; repLeft "-6077"; repStart "233"; chrX rmsk exon 37468157 37469950 1918 + . gene_id "PABLB_Xp21.1b"; transcript_id "PABLB_Xp21.1b"; locus "PABLB_Xp21.1b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0103"; repClass "LTR"; repEnd "4255"; repFamily "ERV1"; repLeft "-2867"; repStart "2472"; ### PABLB_Xp21.1c ### chrX rmsk gene 37470649 37472557 . + . gene_id "PABLB_Xp21.1c"; transcript_id "PABLB_Xp21.1c"; locus "PABLB_Xp21.1c"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0104"; model_cov "1402"; model_pct "19.7"; chrX rmsk exon 37470649 37471062 543 + . gene_id "PABLB_Xp21.1c"; transcript_id "PABLB_Xp21.1c"; locus "PABLB_Xp21.1c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0104"; repClass "LTR"; repEnd "4137"; repFamily "ERV1"; repLeft "-2985"; repStart "3784"; chrX rmsk exon 37471518 37472557 1890 + . gene_id "PABLB_Xp21.1c"; transcript_id "PABLB_Xp21.1c"; locus "PABLB_Xp21.1c"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0104"; repClass "LTR"; repEnd "6682"; repFamily "ERV1"; repLeft "-440"; repStart "5633"; ### ERVLB4_Xp21.1e ### chrX rmsk gene 37475533 37478048 . - . gene_id "ERVLB4_Xp21.1e"; transcript_id "ERVLB4_Xp21.1e"; locus "ERVLB4_Xp21.1e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1781"; model_cov "1993"; model_pct "34.9"; chrX rmsk exon 37475533 37476776 7837 - . gene_id "ERVLB4_Xp21.1e"; transcript_id "ERVLB4_Xp21.1e"; locus "ERVLB4_Xp21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1781"; repClass "LTR"; repEnd "2553"; repFamily "ERVL"; repLeft "1320"; repStart "-3161"; chrX rmsk exon 37477329 37477952 3392 - . gene_id "ERVLB4_Xp21.1e"; transcript_id "ERVLB4_Xp21.1e"; locus "ERVLB4_Xp21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1781"; repClass "LTR"; repEnd "1322"; repFamily "ERVL"; repLeft "657"; repStart "-4392"; chrX rmsk exon 37477953 37478048 476 - . gene_id "ERVLB4_Xp21.1e"; transcript_id "ERVLB4_Xp21.1e"; locus "ERVLB4_Xp21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1781"; repClass "LTR"; repEnd "728"; repFamily "ERVL"; repLeft "633"; repStart "-4986"; ### HERVIP10F_Xp21.1 ### chrX rmsk gene 37478342 37480060 . + . gene_id "HERVIP10F_Xp21.1"; transcript_id "HERVIP10F_Xp21.1"; locus "HERVIP10F_Xp21.1"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0124"; model_cov "1241"; model_pct "16.0"; chrX rmsk exon 37478342 37478816 3548 + . gene_id "HERVIP10F_Xp21.1"; transcript_id "HERVIP10F_Xp21.1"; locus "HERVIP10F_Xp21.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0124"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 37478817 37479332 3677 + . gene_id "HERVIP10F_Xp21.1"; transcript_id "HERVIP10F_Xp21.1"; locus "HERVIP10F_Xp21.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0124"; repClass "LTR"; repEnd "507"; repFamily "ERV1"; repLeft "-7230"; repStart "1"; chrX rmsk exon 37479327 37480060 6271 + . gene_id "HERVIP10F_Xp21.1"; transcript_id "HERVIP10F_Xp21.1"; locus "HERVIP10F_Xp21.1"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0124"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "-5323"; repStart "1679"; ### HERVIP10FH_Xp21.1 ### chrX rmsk gene 37480049 37484837 . + . gene_id "HERVIP10FH_Xp21.1"; transcript_id "HERVIP10FH_Xp21.1"; locus "HERVIP10FH_Xp21.1"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0205"; model_cov "4300"; model_pct "84.3"; chrX rmsk exon 37480049 37484307 33947 + . gene_id "HERVIP10FH_Xp21.1"; transcript_id "HERVIP10FH_Xp21.1"; locus "HERVIP10FH_Xp21.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0205"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "802"; chrX rmsk exon 37484308 37484837 3807 + . gene_id "HERVIP10FH_Xp21.1"; transcript_id "HERVIP10FH_Xp21.1"; locus "HERVIP10FH_Xp21.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0205"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xp21.1f ### chrX rmsk gene 37553451 37555960 . - . gene_id "MER61_Xp21.1f"; transcript_id "MER61_Xp21.1f"; locus "MER61_Xp21.1f"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0380"; model_cov "1866"; model_pct "35.8"; chrX rmsk exon 37553451 37553780 1929 - . gene_id "MER61_Xp21.1f"; transcript_id "MER61_Xp21.1f"; locus "MER61_Xp21.1f"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0380"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 37553781 37553818 12502 - . gene_id "MER61_Xp21.1f"; transcript_id "MER61_Xp21.1f"; locus "MER61_Xp21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0380"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5180"; repStart "0"; chrX rmsk exon 37553890 37554066 12502 - . gene_id "MER61_Xp21.1f"; transcript_id "MER61_Xp21.1f"; locus "MER61_Xp21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0380"; repClass "LTR"; repEnd "5179"; repFamily "ERV1"; repLeft "4973"; repStart "-38"; chrX rmsk exon 37554366 37555960 12502 - . gene_id "MER61_Xp21.1f"; transcript_id "MER61_Xp21.1f"; locus "MER61_Xp21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0380"; repClass "LTR"; repEnd "4972"; repFamily "ERV1"; repLeft "3349"; repStart "-245"; ### MER41_Xp11.4a ### chrX rmsk gene 37883000 37888014 . - . gene_id "MER41_Xp11.4a"; transcript_id "MER41_Xp11.4a"; locus "MER41_Xp11.4a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0564"; model_cov "4629"; model_pct "77.9"; chrX rmsk exon 37883000 37883465 2464 - . gene_id "MER41_Xp11.4a"; transcript_id "MER41_Xp11.4a"; locus "MER41_Xp11.4a"; repName "MER41C"; geneRegion "ltr"; locid "MER41-int_0564"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "2"; repStart "-114"; chrX rmsk exon 37883515 37883659 927 - . gene_id "MER41_Xp11.4a"; transcript_id "MER41_Xp11.4a"; locus "MER41_Xp11.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0564"; repClass "LTR"; repEnd "5870"; repFamily "ERV1"; repLeft "5728"; repStart "-76"; chrX rmsk exon 37883655 37884472 4392 - . gene_id "MER41_Xp11.4a"; transcript_id "MER41_Xp11.4a"; locus "MER41_Xp11.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0564"; repClass "LTR"; repEnd "5486"; repFamily "ERV1"; repLeft "4638"; repStart "-460"; chrX rmsk exon 37884480 37888014 18683 - . gene_id "MER41_Xp11.4a"; transcript_id "MER41_Xp11.4a"; locus "MER41_Xp11.4a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0564"; repClass "LTR"; repEnd "4020"; repFamily "ERV1"; repLeft "381"; repStart "-1926"; ### MER4B_Xp11.4a ### chrX rmsk gene 37968249 37970524 . - . gene_id "MER4B_Xp11.4a"; transcript_id "MER4B_Xp11.4a"; locus "MER4B_Xp11.4a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0483"; model_cov "2421"; model_pct "35.8"; chrX rmsk exon 37968249 37968443 1103 - . gene_id "MER4B_Xp11.4a"; transcript_id "MER4B_Xp11.4a"; locus "MER4B_Xp11.4a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0483"; repClass "LTR"; repEnd "4652"; repFamily "ERV1"; repLeft "4448"; repStart "-2106"; chrX rmsk exon 37968442 37969056 3524 - . gene_id "MER4B_Xp11.4a"; transcript_id "MER4B_Xp11.4a"; locus "MER4B_Xp11.4a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0483"; repClass "LTR"; repEnd "4085"; repFamily "ERV1"; repLeft "3436"; repStart "-2673"; chrX rmsk exon 37969055 37969644 7487 - . gene_id "MER4B_Xp11.4a"; transcript_id "MER4B_Xp11.4a"; locus "MER4B_Xp11.4a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0483"; repClass "LTR"; repEnd "3094"; repFamily "ERV1"; repLeft "2509"; repStart "-3664"; chrX rmsk exon 37969934 37970524 7487 - . gene_id "MER4B_Xp11.4a"; transcript_id "MER4B_Xp11.4a"; locus "MER4B_Xp11.4a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0483"; repClass "LTR"; repEnd "2508"; repFamily "ERV1"; repLeft "1525"; repStart "-4250"; ### LTR57_Xp11.4 ### chrX rmsk gene 37970525 37971075 . - . gene_id "LTR57_Xp11.4"; transcript_id "LTR57_Xp11.4"; locus "LTR57_Xp11.4"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0192"; model_cov "617"; model_pct "11.5"; chrX rmsk exon 37970525 37971075 1229 - . gene_id "LTR57_Xp11.4"; transcript_id "LTR57_Xp11.4"; locus "LTR57_Xp11.4"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0192"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "963"; repStart "-3763"; ### MER4B_Xp11.4b ### chrX rmsk gene 37971076 37973325 . - . gene_id "MER4B_Xp11.4b"; transcript_id "MER4B_Xp11.4b"; locus "MER4B_Xp11.4b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0484"; model_cov "1817"; model_pct "26.9"; chrX rmsk exon 37971076 37971516 7487 - . gene_id "MER4B_Xp11.4b"; transcript_id "MER4B_Xp11.4b"; locus "MER4B_Xp11.4b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0484"; repClass "LTR"; repEnd "2508"; repFamily "ERV1"; repLeft "1771"; repStart "-4250"; chrX rmsk exon 37971555 37972566 6086 - . gene_id "MER4B_Xp11.4b"; transcript_id "MER4B_Xp11.4b"; locus "MER4B_Xp11.4b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0484"; repClass "LTR"; repEnd "1082"; repFamily "ERV1"; repLeft "2"; repStart "-5676"; chrX rmsk exon 37972567 37973325 5622 - . gene_id "MER4B_Xp11.4b"; transcript_id "MER4B_Xp11.4b"; locus "MER4B_Xp11.4b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0484"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_Xp11.4b ### chrX rmsk gene 38026405 38031211 . - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0565"; model_cov "4173"; model_pct "70.2"; chrX rmsk exon 38026405 38026941 4031 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0565"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 38026942 38027815 11705 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0565"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5080"; repStart "-2"; chrX rmsk exon 38028124 38028910 11705 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0565"; repClass "LTR"; repEnd "5079"; repFamily "ERV1"; repLeft "4293"; repStart "-867"; chrX rmsk exon 38028914 38028966 425 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0565"; repClass "LTR"; repEnd "4059"; repFamily "ERV1"; repLeft "4007"; repStart "-1887"; chrX rmsk exon 38028949 38030436 9063 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0565"; repClass "LTR"; repEnd "3757"; repFamily "ERV1"; repLeft "2167"; repStart "-2189"; chrX rmsk exon 38030433 38031211 4175 - . gene_id "MER41_Xp11.4b"; transcript_id "MER41_Xp11.4b"; locus "MER41_Xp11.4b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0565"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1136"; repStart "-3929"; ### ERVLE_Xp11.4a ### chrX rmsk gene 38229619 38232955 . + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3649"; model_cov "2116"; model_pct "37.3"; chrX rmsk exon 38229619 38230094 3458 + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3649"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "-2191"; repStart "2994"; chrX rmsk exon 38230396 38230661 3458 + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3649"; repClass "LTR"; repEnd "3733"; repFamily "ERVL"; repLeft "-1934"; repStart "3477"; chrX rmsk exon 38230664 38231024 5000 + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3649"; repClass "LTR"; repEnd "4679"; repFamily "ERVL"; repLeft "-988"; repStart "4287"; chrX rmsk exon 38231324 38232330 5000 + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3649"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "4680"; chrX rmsk exon 38232337 38232955 2522 + . gene_id "ERVLE_Xp11.4a"; transcript_id "ERVLE_Xp11.4a"; locus "ERVLE_Xp11.4a"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3649"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "0"; repStart "6"; ### ERV316A3_Xp11.4a ### chrX rmsk gene 38435235 38438684 . + . gene_id "ERV316A3_Xp11.4a"; transcript_id "ERV316A3_Xp11.4a"; locus "ERV316A3_Xp11.4a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2774"; model_cov "2325"; model_pct "44.5"; chrX rmsk exon 38435235 38435631 1243 + . gene_id "ERV316A3_Xp11.4a"; transcript_id "ERV316A3_Xp11.4a"; locus "ERV316A3_Xp11.4a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2774"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "4"; chrX rmsk exon 38435752 38438073 8647 + . gene_id "ERV316A3_Xp11.4a"; transcript_id "ERV316A3_Xp11.4a"; locus "ERV316A3_Xp11.4a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2774"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "-207"; repStart "2694"; chrX rmsk exon 38438229 38438684 1485 + . gene_id "ERV316A3_Xp11.4a"; transcript_id "ERV316A3_Xp11.4a"; locus "ERV316A3_Xp11.4a"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2774"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER61_Xp11.4 ### chrX rmsk gene 38725936 38731071 . + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0381"; model_cov "5987"; model_pct "100.0"; chrX rmsk exon 38725936 38726040 473 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0381"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "-221"; repStart "1"; chrX rmsk exon 38726040 38726113 450 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0381"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "272"; chrX rmsk exon 38726114 38726780 2737 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0381"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "-4517"; repStart "1"; chrX rmsk exon 38726821 38726862 330 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0381"; repClass "LTR"; repEnd "1361"; repFamily "ERV1"; repLeft "-3856"; repStart "1320"; chrX rmsk exon 38726866 38727392 6614 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0381"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "-2891"; repStart "2138"; chrX rmsk exon 38727691 38730771 18146 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0381"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-1139"; repStart "-981"; chrX rmsk exon 38730772 38731071 1357 + . gene_id "MER61_Xp11.4"; transcript_id "MER61_Xp11.4"; locus "MER61_Xp11.4"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0381"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xp11.4 ### chrX rmsk gene 38745381 38747020 . - . gene_id "HERVL_Xp11.4"; transcript_id "HERVL_Xp11.4"; locus "HERVL_Xp11.4"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1280"; model_cov "1078"; model_pct "19.1"; chrX rmsk exon 38745381 38745499 1200 - . gene_id "HERVL_Xp11.4"; transcript_id "HERVL_Xp11.4"; locus "HERVL_Xp11.4"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1280"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "371"; repStart "0"; chrX rmsk exon 38745784 38745954 1200 - . gene_id "HERVL_Xp11.4"; transcript_id "HERVL_Xp11.4"; locus "HERVL_Xp11.4"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1280"; repClass "LTR"; repEnd "370"; repFamily "ERVL"; repLeft "212"; repStart "-74"; chrX rmsk exon 38745955 38747020 8334 - . gene_id "HERVL_Xp11.4"; transcript_id "HERVL_Xp11.4"; locus "HERVL_Xp11.4"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1280"; repClass "LTR"; repEnd "4092"; repFamily "ERVL"; repLeft "3014"; repStart "-1562"; ### ERV316A3_Xp11.4b ### chrX rmsk gene 40340354 40341440 . - . gene_id "ERV316A3_Xp11.4b"; transcript_id "ERV316A3_Xp11.4b"; locus "ERV316A3_Xp11.4b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2776"; model_cov "656"; model_pct "12.6"; chrX rmsk exon 40340354 40340784 1936 - . gene_id "ERV316A3_Xp11.4b"; transcript_id "ERV316A3_Xp11.4b"; locus "ERV316A3_Xp11.4b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2776"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "1"; repStart "-2"; chrX rmsk exon 40340790 40341440 2384 - . gene_id "ERV316A3_Xp11.4b"; transcript_id "ERV316A3_Xp11.4b"; locus "ERV316A3_Xp11.4b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2776"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "4567"; repStart "-3"; ### ERV316A3_Xp11.4c ### chrX rmsk gene 40347803 40352178 . - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2777"; model_cov "1379"; model_pct "26.4"; chrX rmsk exon 40347803 40348168 890 - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2777"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "3123"; repStart "-1740"; chrX rmsk exon 40348182 40348420 942 - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2777"; repClass "LTR"; repEnd "1418"; repFamily "ERVL"; repLeft "1161"; repStart "-3808"; chrX rmsk exon 40348823 40349047 942 - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2777"; repClass "LTR"; repEnd "1160"; repFamily "ERVL"; repLeft "930"; repStart "-4066"; chrX rmsk exon 40349527 40349774 911 - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2777"; repClass "LTR"; repEnd "918"; repFamily "ERVL"; repLeft "666"; repStart "-4308"; chrX rmsk exon 40351898 40352178 963 - . gene_id "ERV316A3_Xp11.4c"; transcript_id "ERV316A3_Xp11.4c"; locus "ERV316A3_Xp11.4c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2777"; repClass "LTR"; repEnd "894"; repFamily "ERVL"; repLeft "617"; repStart "-4332"; ### ERVLB4_Xp11.4 ### chrX rmsk gene 40436551 40439492 . + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1783"; model_cov "1832"; model_pct "32.1"; chrX rmsk exon 40436551 40436960 2168 + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1783"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-41"; repStart "5"; chrX rmsk exon 40437050 40437091 2168 + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1783"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "480"; chrX rmsk exon 40437093 40438756 12533 + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1783"; repClass "LTR"; repEnd "1663"; repFamily "ERVL"; repLeft "-4051"; repStart "2"; chrX rmsk exon 40439270 40439446 12533 + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1783"; repClass "LTR"; repEnd "1835"; repFamily "ERVL"; repLeft "-3879"; repStart "1664"; chrX rmsk exon 40439447 40439492 257 + . gene_id "ERVLB4_Xp11.4"; transcript_id "ERVLB4_Xp11.4"; locus "ERVLB4_Xp11.4"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1783"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "474"; ### ERV316A3_Xp11.4d ### chrX rmsk gene 40523752 40528724 . - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2778"; model_cov "3458"; model_pct "66.2"; chrX rmsk exon 40523752 40524193 1086 - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2778"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 40524246 40525853 8836 - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2778"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "3564"; repStart "-46"; chrX rmsk exon 40526222 40526951 8836 - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2778"; repClass "LTR"; repEnd "3563"; repFamily "ERVL"; repLeft "2818"; repStart "-1663"; chrX rmsk exon 40527256 40527943 8836 - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2778"; repClass "LTR"; repEnd "2817"; repFamily "ERVL"; repLeft "2182"; repStart "-2409"; chrX rmsk exon 40528248 40528724 8836 - . gene_id "ERV316A3_Xp11.4d"; transcript_id "ERV316A3_Xp11.4d"; locus "ERV316A3_Xp11.4d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2778"; repClass "LTR"; repEnd "2181"; repFamily "ERVL"; repLeft "1719"; repStart "-3045"; ### HUERSP2_Xp11.4 ### chrX rmsk gene 40791611 40792236 . - . gene_id "HUERSP2_Xp11.4"; transcript_id "HUERSP2_Xp11.4"; locus "HUERSP2_Xp11.4"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0125"; model_cov "321"; model_pct "10.4"; chrX rmsk exon 40791611 40791920 2204 - . gene_id "HUERSP2_Xp11.4"; transcript_id "HUERSP2_Xp11.4"; locus "HUERSP2_Xp11.4"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0125"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2780"; repStart "0"; chrX rmsk exon 40792223 40792236 2204 - . gene_id "HUERSP2_Xp11.4"; transcript_id "HUERSP2_Xp11.4"; locus "HUERSP2_Xp11.4"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0125"; repClass "LTR"; repEnd "2779"; repFamily "ERV1"; repLeft "2766"; repStart "-309"; ### HERVL40_Xp11.4 ### chrX rmsk gene 40825612 40831021 . - . gene_id "HERVL40_Xp11.4"; transcript_id "HERVL40_Xp11.4"; locus "HERVL40_Xp11.4"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0461"; model_cov "4648"; model_pct "84.1"; chrX rmsk exon 40825612 40826395 10948 - . gene_id "HERVL40_Xp11.4"; transcript_id "HERVL40_Xp11.4"; locus "HERVL40_Xp11.4"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0461"; repClass "LTR"; repEnd "4660"; repFamily "ERVL"; repLeft "3986"; repStart "-870"; chrX rmsk exon 40826701 40830450 10948 - . gene_id "HERVL40_Xp11.4"; transcript_id "HERVL40_Xp11.4"; locus "HERVL40_Xp11.4"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0461"; repClass "LTR"; repEnd "3985"; repFamily "ERVL"; repLeft "95"; repStart "-1545"; chrX rmsk exon 40830752 40830836 8141 - . gene_id "HERVL40_Xp11.4"; transcript_id "HERVL40_Xp11.4"; locus "HERVL40_Xp11.4"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0461"; repClass "LTR"; repEnd "94"; repFamily "ERVL"; repLeft "10"; repStart "-5436"; chrX rmsk exon 40830844 40831021 635 - . gene_id "HERVL40_Xp11.4"; transcript_id "HERVL40_Xp11.4"; locus "HERVL40_Xp11.4"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0461"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "276"; repStart "0"; ### ERVLE_Xp11.4b ### chrX rmsk gene 40864597 40865176 . + . gene_id "ERVLE_Xp11.4b"; transcript_id "ERVLE_Xp11.4b"; locus "ERVLE_Xp11.4b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3654"; model_cov "565"; model_pct "10.0"; chrX rmsk exon 40864597 40865057 1911 + . gene_id "ERVLE_Xp11.4b"; transcript_id "ERVLE_Xp11.4b"; locus "ERVLE_Xp11.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3654"; repClass "LTR"; repEnd "4059"; repFamily "ERVL"; repLeft "-1608"; repStart "3594"; chrX rmsk exon 40865076 40865176 411 + . gene_id "ERVLE_Xp11.4b"; transcript_id "ERVLE_Xp11.4b"; locus "ERVLE_Xp11.4b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3654"; repClass "LTR"; repEnd "4299"; repFamily "ERVL"; repLeft "-1368"; repStart "4199"; ### HERVK11_Xp11.4a ### chrX rmsk gene 41644222 41648694 . + . gene_id "HERVK11_Xp11.4a"; transcript_id "HERVK11_Xp11.4a"; locus "HERVK11_Xp11.4a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0106"; model_cov "2666"; model_pct "33.5"; chrX rmsk exon 41644222 41645155 7649 + . gene_id "HERVK11_Xp11.4a"; transcript_id "HERVK11_Xp11.4a"; locus "HERVK11_Xp11.4a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0106"; repClass "LTR"; repEnd "935"; repFamily "ERVK"; repLeft "-136"; repStart "1"; chrX rmsk exon 41645170 41647625 11522 + . gene_id "HERVK11_Xp11.4a"; transcript_id "HERVK11_Xp11.4a"; locus "HERVK11_Xp11.4a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0106"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "5287"; chrX rmsk exon 41647626 41648694 9231 + . gene_id "HERVK11_Xp11.4a"; transcript_id "HERVK11_Xp11.4a"; locus "HERVK11_Xp11.4a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0106"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4B_Xp11.4c ### chrX rmsk gene 41653247 41655457 . + . gene_id "MER4B_Xp11.4c"; transcript_id "MER4B_Xp11.4c"; locus "MER4B_Xp11.4c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0485"; model_cov "1886"; model_pct "27.9"; chrX rmsk exon 41653247 41654388 8834 + . gene_id "MER4B_Xp11.4c"; transcript_id "MER4B_Xp11.4c"; locus "MER4B_Xp11.4c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0485"; repClass "LTR"; repEnd "4194"; repFamily "ERV1"; repLeft "-2564"; repStart "3085"; chrX rmsk exon 41654701 41655457 8834 + . gene_id "MER4B_Xp11.4c"; transcript_id "MER4B_Xp11.4c"; locus "MER4B_Xp11.4c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0485"; repClass "LTR"; repEnd "4972"; repFamily "ERV1"; repLeft "-1786"; repStart "4195"; ### MER4_Xp11.4a ### chrX rmsk gene 42090928 42094297 . - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0818"; model_cov "3840"; model_pct "58.2"; chrX rmsk exon 42090928 42091530 3504 - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0818"; repClass "LTR"; repEnd "4463"; repFamily "ERV1"; repLeft "3840"; repStart "-2135"; chrX rmsk exon 42091501 42092434 3595 - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0818"; repClass "LTR"; repEnd "4262"; repFamily "ERV1"; repLeft "2659"; repStart "-2336"; chrX rmsk exon 42092676 42093381 4225 - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0818"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "1764"; repStart "-4104"; chrX rmsk exon 42093395 42093652 1331 - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0818"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "755"; repStart "-5573"; chrX rmsk exon 42093678 42094297 4126 - . gene_id "MER4_Xp11.4a"; transcript_id "MER4_Xp11.4a"; locus "MER4_Xp11.4a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0818"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "38"; repStart "-5946"; ### MER4_Xp11.4b ### chrX rmsk gene 42094312 42095780 . - . gene_id "MER4_Xp11.4b"; transcript_id "MER4_Xp11.4b"; locus "MER4_Xp11.4b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0819"; model_cov "1147"; model_pct "17.4"; chrX rmsk exon 42094312 42094662 1118 - . gene_id "MER4_Xp11.4b"; transcript_id "MER4_Xp11.4b"; locus "MER4_Xp11.4b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0819"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2112"; repStart "-4107"; chrX rmsk exon 42094714 42094800 391 - . gene_id "MER4_Xp11.4b"; transcript_id "MER4_Xp11.4b"; locus "MER4_Xp11.4b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0819"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 42094788 42095336 2580 - . gene_id "MER4_Xp11.4b"; transcript_id "MER4_Xp11.4b"; locus "MER4_Xp11.4b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0819"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chrX rmsk exon 42095340 42095780 3124 - . gene_id "MER4_Xp11.4b"; transcript_id "MER4_Xp11.4b"; locus "MER4_Xp11.4b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0819"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11_Xp11.4b ### chrX rmsk gene 42161343 42164802 . - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0107"; model_cov "2476"; model_pct "31.1"; chrX rmsk exon 42161343 42162400 6974 - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0107"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 42162401 42163403 7590 - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0107"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chrX rmsk exon 42163389 42164524 8916 - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0107"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "5623"; repStart "-1186"; chrX rmsk exon 42164524 42164577 377 - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0107"; repClass "LTR"; repEnd "5571"; repFamily "ERVK"; repLeft "5467"; repStart "-2382"; chrX rmsk exon 42164569 42164802 1786 - . gene_id "HERVK11_Xp11.4b"; transcript_id "HERVK11_Xp11.4b"; locus "HERVK11_Xp11.4b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0107"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "4369"; repStart "-3352"; ### HERVL_Xp11.3a ### chrX rmsk gene 42573054 42574584 . + . gene_id "HERVL_Xp11.3a"; transcript_id "HERVL_Xp11.3a"; locus "HERVL_Xp11.3a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1281"; model_cov "988"; model_pct "17.5"; chrX rmsk exon 42573054 42574003 5157 + . gene_id "HERVL_Xp11.3a"; transcript_id "HERVL_Xp11.3a"; locus "HERVL_Xp11.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1281"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4666"; chrX rmsk exon 42574004 42574584 2157 + . gene_id "HERVL_Xp11.3a"; transcript_id "HERVL_Xp11.3a"; locus "HERVL_Xp11.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1281"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_Xp11.3a ### chrX rmsk gene 42640432 42642015 . + . gene_id "ERVLE_Xp11.3a"; transcript_id "ERVLE_Xp11.3a"; locus "ERVLE_Xp11.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3656"; model_cov "1582"; model_pct "27.9"; chrX rmsk exon 42640432 42642015 3667 + . gene_id "ERVLE_Xp11.3a"; transcript_id "ERVLE_Xp11.3a"; locus "ERVLE_Xp11.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3656"; repClass "LTR"; repEnd "5568"; repFamily "ERVL"; repLeft "-99"; repStart "3986"; ### HERVFH19_Xp11.3a ### chrX rmsk gene 42762295 42771012 . + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; category "prototype"; intModel "HERVFH19-int"; locid "HERVFH19-int_0046"; model_cov "7714"; model_pct "99.9"; chrX rmsk exon 42762295 42762764 3258 + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0046"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 42762765 42763067 56035 + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0046"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "-7381"; repStart "1"; chrX rmsk exon 42763096 42767129 56035 + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0046"; repClass "LTR"; repEnd "4348"; repFamily "ERV1"; repLeft "-3371"; repStart "339"; chrX rmsk exon 42767159 42770542 56035 + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0046"; repClass "LTR"; repEnd "7717"; repFamily "ERV1"; repLeft "-2"; repStart "4349"; chrX rmsk exon 42770543 42771012 3091 + . gene_id "HERVFH19_Xp11.3a"; transcript_id "HERVFH19_Xp11.3a"; locus "HERVFH19_Xp11.3a"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0046"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xp11.3a ### chrX rmsk gene 42788728 42794910 . - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0382"; model_cov "5041"; model_pct "96.6"; chrX rmsk exon 42788728 42789041 1484 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0382"; repClass "LTR"; repEnd "409"; repFamily "ERV1"; repLeft "-194"; repStart "-18"; chrX rmsk exon 42789042 42793155 26751 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0382"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1032"; repStart "0"; chrX rmsk exon 42793457 42793534 26751 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0382"; repClass "LTR"; repEnd "1031"; repFamily "ERV1"; repLeft "958"; repStart "-4186"; chrX rmsk exon 42793535 42793939 3017 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0382"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "455"; repStart "-4377"; chrX rmsk exon 42794239 42794450 3017 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0382"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "181"; repStart "-4763"; chrX rmsk exon 42794468 42794596 679 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0382"; repClass "LTR"; repEnd "126"; repFamily "ERV1"; repLeft "1"; repStart "-5091"; chrX rmsk exon 42794606 42794910 1423 - . gene_id "MER61_Xp11.3a"; transcript_id "MER61_Xp11.3a"; locus "MER61_Xp11.3a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0382"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### ERVLE_Xp11.3b ### chrX rmsk gene 42940667 42945038 . - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3657"; model_cov "2258"; model_pct "39.8"; chrX rmsk exon 42940667 42941493 7209 - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3657"; repClass "LTR"; repEnd "2259"; repFamily "ERVL"; repLeft "1449"; repStart "-3408"; chrX rmsk exon 42941950 42942386 7209 - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3657"; repClass "LTR"; repEnd "1448"; repFamily "ERVL"; repLeft "998"; repStart "-4219"; chrX rmsk exon 42942781 42943540 7209 - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3657"; repClass "LTR"; repEnd "997"; repFamily "ERVL"; repLeft "200"; repStart "-4670"; chrX rmsk exon 42943956 42944145 1047 - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3657"; repClass "LTR"; repEnd "155"; repFamily "ERVL"; repLeft "-46"; repStart "-5512"; chrX rmsk exon 42944501 42945038 2012 - . gene_id "ERVLE_Xp11.3b"; transcript_id "ERVLE_Xp11.3b"; locus "ERVLE_Xp11.3b"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3657"; repClass "LTR"; repEnd "608"; repFamily "ERVL"; repLeft "1"; repStart "-55"; ### MER61_Xp11.3b ### chrX rmsk gene 42970104 42976488 . - . gene_id "MER61_Xp11.3b"; transcript_id "MER61_Xp11.3b"; locus "MER61_Xp11.3b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0383"; model_cov "7840"; model_pct "100.0"; chrX rmsk exon 42970104 42973044 9950 - . gene_id "MER61_Xp11.3b"; transcript_id "MER61_Xp11.3b"; locus "MER61_Xp11.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0383"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-1120"; repStart "-1139"; chrX rmsk exon 42973745 42976488 6104 - . gene_id "MER61_Xp11.3b"; transcript_id "MER61_Xp11.3b"; locus "MER61_Xp11.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0383"; repClass "LTR"; repEnd "478"; repFamily "ERV1"; repLeft "-2164"; repStart "-4739"; ### ERV316A3_Xp11.3a ### chrX rmsk gene 42987259 42989218 . - . gene_id "ERV316A3_Xp11.3a"; transcript_id "ERV316A3_Xp11.3a"; locus "ERV316A3_Xp11.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2779"; model_cov "1209"; model_pct "23.1"; chrX rmsk exon 42987259 42988031 3045 - . gene_id "ERV316A3_Xp11.3a"; transcript_id "ERV316A3_Xp11.3a"; locus "ERV316A3_Xp11.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2779"; repClass "LTR"; repEnd "1410"; repFamily "ERVL"; repLeft "634"; repStart "-3816"; chrX rmsk exon 42988160 42988556 3045 - . gene_id "ERV316A3_Xp11.3a"; transcript_id "ERV316A3_Xp11.3a"; locus "ERV316A3_Xp11.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2779"; repClass "LTR"; repEnd "633"; repFamily "ERVL"; repLeft "200"; repStart "-4593"; chrX rmsk exon 42988779 42989218 1244 - . gene_id "ERV316A3_Xp11.3a"; transcript_id "ERV316A3_Xp11.3a"; locus "ERV316A3_Xp11.3a"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2779"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### LTR25_Xp11.3 ### chrX rmsk gene 43177433 43179339 . + . gene_id "LTR25_Xp11.3"; transcript_id "LTR25_Xp11.3"; locus "LTR25_Xp11.3"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0141"; model_cov "888"; model_pct "12.4"; chrX rmsk exon 43177433 43177687 2885 + . gene_id "LTR25_Xp11.3"; transcript_id "LTR25_Xp11.3"; locus "LTR25_Xp11.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0141"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "-4807"; repStart "2156"; chrX rmsk exon 43178039 43179339 3593 + . gene_id "LTR25_Xp11.3"; transcript_id "LTR25_Xp11.3"; locus "LTR25_Xp11.3"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0141"; repClass "LTR"; repEnd "4415"; repFamily "ERV1"; repLeft "-2773"; repStart "3752"; ### ERV316A3_Xp11.3b ### chrX rmsk gene 43238756 43241113 . + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2780"; model_cov "1456"; model_pct "27.9"; chrX rmsk exon 43238756 43239177 1535 + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2780"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "3"; chrX rmsk exon 43239285 43239802 3821 + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2780"; repClass "LTR"; repEnd "621"; repFamily "ERVL"; repLeft "-4605"; repStart "95"; chrX rmsk exon 43240097 43240844 3821 + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2780"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-3837"; repStart "622"; chrX rmsk exon 43240840 43240997 660 + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2780"; repClass "LTR"; repEnd "3888"; repFamily "ERVL"; repLeft "-1338"; repStart "3725"; chrX rmsk exon 43241013 43241113 314 + . gene_id "ERV316A3_Xp11.3b"; transcript_id "ERV316A3_Xp11.3b"; locus "ERV316A3_Xp11.3b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2780"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-35"; repStart "356"; ### ERVLB4_Xp11.3a ### chrX rmsk gene 43353633 43356134 . - . gene_id "ERVLB4_Xp11.3a"; transcript_id "ERVLB4_Xp11.3a"; locus "ERVLB4_Xp11.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1785"; model_cov "1536"; model_pct "26.9"; chrX rmsk exon 43353633 43353973 8369 - . gene_id "ERVLB4_Xp11.3a"; transcript_id "ERVLB4_Xp11.3a"; locus "ERVLB4_Xp11.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1785"; repClass "LTR"; repEnd "1540"; repFamily "ERVL"; repLeft "1202"; repStart "-4174"; chrX rmsk exon 43354310 43355523 8369 - . gene_id "ERVLB4_Xp11.3a"; transcript_id "ERVLB4_Xp11.3a"; locus "ERVLB4_Xp11.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1785"; repClass "LTR"; repEnd "1201"; repFamily "ERVL"; repLeft "3"; repStart "-4513"; chrX rmsk exon 43355606 43356134 1891 - . gene_id "ERVLB4_Xp11.3a"; transcript_id "ERVLB4_Xp11.3a"; locus "ERVLB4_Xp11.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1785"; repClass "LTR"; repEnd "534"; repFamily "ERVL"; repLeft "3"; repStart "-20"; ### ERVLE_Xp11.3c ### chrX rmsk gene 43518498 43521839 . - . gene_id "ERVLE_Xp11.3c"; transcript_id "ERVLE_Xp11.3c"; locus "ERVLE_Xp11.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3661"; model_cov "1726"; model_pct "30.5"; chrX rmsk exon 43518498 43519317 1433 - . gene_id "ERVLE_Xp11.3c"; transcript_id "ERVLE_Xp11.3c"; locus "ERVLE_Xp11.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3661"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "1580"; repStart "-3216"; chrX rmsk exon 43519711 43519827 1310 - . gene_id "ERVLE_Xp11.3c"; transcript_id "ERVLE_Xp11.3c"; locus "ERVLE_Xp11.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3661"; repClass "LTR"; repEnd "1582"; repFamily "ERVL"; repLeft "1465"; repStart "-4085"; chrX rmsk exon 43520208 43520490 1310 - . gene_id "ERVLE_Xp11.3c"; transcript_id "ERVLE_Xp11.3c"; locus "ERVLE_Xp11.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3661"; repClass "LTR"; repEnd "1464"; repFamily "ERVL"; repLeft "1172"; repStart "-4203"; chrX rmsk exon 43521386 43521839 736 - . gene_id "ERVLE_Xp11.3c"; transcript_id "ERVLE_Xp11.3c"; locus "ERVLE_Xp11.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3661"; repClass "LTR"; repEnd "1105"; repFamily "ERVL"; repLeft "659"; repStart "-4562"; ### MER4_Xp11.3a ### chrX rmsk gene 43619349 43624287 . - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0820"; model_cov "3325"; model_pct "50.4"; chrX rmsk exon 43619349 43620476 7164 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "4977"; repFamily "ERV1"; repLeft "3837"; repStart "-1621"; chrX rmsk exon 43620476 43621124 2495 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "3236"; repFamily "ERV1"; repLeft "2949"; repStart "-3362"; chrX rmsk exon 43621465 43621682 2495 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "2948"; repFamily "ERV1"; repLeft "2739"; repStart "-3650"; chrX rmsk exon 43621922 43622622 4564 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1764"; repStart "-4103"; chrX rmsk exon 43622645 43623114 6032 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "998"; repFamily "ERV1"; repLeft "474"; repStart "-5600"; chrX rmsk exon 43623543 43623650 6032 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "473"; repFamily "ERV1"; repLeft "366"; repStart "-6125"; chrX rmsk exon 43623952 43624287 6032 - . gene_id "MER4_Xp11.3a"; transcript_id "MER4_Xp11.3a"; locus "MER4_Xp11.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0820"; repClass "LTR"; repEnd "365"; repFamily "ERV1"; repLeft "38"; repStart "-6233"; ### MER4_Xp11.3b ### chrX rmsk gene 43624349 43625828 . - . gene_id "MER4_Xp11.3b"; transcript_id "MER4_Xp11.3b"; locus "MER4_Xp11.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0821"; model_cov "1042"; model_pct "15.8"; chrX rmsk exon 43624349 43624653 1474 - . gene_id "MER4_Xp11.3b"; transcript_id "MER4_Xp11.3b"; locus "MER4_Xp11.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0821"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "2121"; repStart "-4163"; chrX rmsk exon 43624703 43624816 392 - . gene_id "MER4_Xp11.3b"; transcript_id "MER4_Xp11.3b"; locus "MER4_Xp11.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0821"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 43624804 43625313 2589 - . gene_id "MER4_Xp11.3b"; transcript_id "MER4_Xp11.3b"; locus "MER4_Xp11.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0821"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "41"; repStart "-5912"; chrX rmsk exon 43625355 43625828 3570 - . gene_id "MER4_Xp11.3b"; transcript_id "MER4_Xp11.3b"; locus "MER4_Xp11.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0821"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_Xp11.3 ### chrX rmsk gene 44999167 45004021 . - . gene_id "HERVIP10FH_Xp11.3"; transcript_id "HERVIP10FH_Xp11.3"; locus "HERVIP10FH_Xp11.3"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0206"; model_cov "4376"; model_pct "85.8"; chrX rmsk exon 44999167 44999656 3313 - . gene_id "HERVIP10FH_Xp11.3"; transcript_id "HERVIP10FH_Xp11.3"; locus "HERVIP10FH_Xp11.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0206"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 44999657 45000000 2617 - . gene_id "HERVIP10FH_Xp11.3"; transcript_id "HERVIP10FH_Xp11.3"; locus "HERVIP10FH_Xp11.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0206"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "4760"; repStart "0"; chrX rmsk exon 45000001 45004021 27806 - . gene_id "HERVIP10FH_Xp11.3"; transcript_id "HERVIP10FH_Xp11.3"; locus "HERVIP10FH_Xp11.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0206"; repClass "LTR"; repEnd "4759"; repFamily "ERV1"; repLeft "725"; repStart "-343"; ### HERVIP10F_Xp11.3 ### chrX rmsk gene 45004017 45006789 . - . gene_id "HERVIP10F_Xp11.3"; transcript_id "HERVIP10F_Xp11.3"; locus "HERVIP10F_Xp11.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0125"; model_cov "2255"; model_pct "29.1"; chrX rmsk exon 45004017 45006327 16359 - . gene_id "HERVIP10F_Xp11.3"; transcript_id "HERVIP10F_Xp11.3"; locus "HERVIP10F_Xp11.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0125"; repClass "LTR"; repEnd "2256"; repFamily "ERV1"; repLeft "1"; repStart "-5481"; chrX rmsk exon 45006328 45006789 3134 - . gene_id "HERVIP10F_Xp11.3"; transcript_id "HERVIP10F_Xp11.3"; locus "HERVIP10F_Xp11.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0125"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER34B_Xp11.3 ### chrX rmsk gene 45202589 45204812 . - . gene_id "MER34B_Xp11.3"; transcript_id "MER34B_Xp11.3"; locus "MER34B_Xp11.3"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0279"; model_cov "1736"; model_pct "32.4"; chrX rmsk exon 45202589 45202938 802 - . gene_id "MER34B_Xp11.3"; transcript_id "MER34B_Xp11.3"; locus "MER34B_Xp11.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0279"; repClass "LTR"; repEnd "4964"; repFamily "ERV1"; repLeft "4627"; repStart "-392"; chrX rmsk exon 45202936 45203342 1085 - . gene_id "MER34B_Xp11.3"; transcript_id "MER34B_Xp11.3"; locus "MER34B_Xp11.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0279"; repClass "LTR"; repEnd "4421"; repFamily "ERV1"; repLeft "4133"; repStart "-935"; chrX rmsk exon 45203358 45204388 2564 - . gene_id "MER34B_Xp11.3"; transcript_id "MER34B_Xp11.3"; locus "MER34B_Xp11.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0279"; repClass "LTR"; repEnd "3183"; repFamily "ERV1"; repLeft "2170"; repStart "-2173"; chrX rmsk exon 45204699 45204812 2564 - . gene_id "MER34B_Xp11.3"; transcript_id "MER34B_Xp11.3"; locus "MER34B_Xp11.3"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0279"; repClass "LTR"; repEnd "2169"; repFamily "ERV1"; repLeft "2071"; repStart "-3187"; ### MER4_Xp11.3c ### chrX rmsk gene 45300040 45307560 . + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0822"; model_cov "6671"; model_pct "100.0"; chrX rmsk exon 45300040 45300467 2708 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0822"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 45300471 45300546 3193 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0822"; repClass "LTR"; repEnd "75"; repFamily "ERV1"; repLeft "-6523"; repStart "1"; chrX rmsk exon 45301183 45302122 3193 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0822"; repClass "LTR"; repEnd "1075"; repFamily "ERV1"; repLeft "-5523"; repStart "76"; chrX rmsk exon 45302159 45302612 1459 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0822"; repClass "LTR"; repEnd "1659"; repFamily "ERV1"; repLeft "-4939"; repStart "1193"; chrX rmsk exon 45302607 45305539 17314 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0822"; repClass "LTR"; repEnd "5347"; repFamily "ERV1"; repLeft "-1251"; repStart "1463"; chrX rmsk exon 45305844 45307121 17314 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0822"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5348"; chrX rmsk exon 45307133 45307560 3004 + . gene_id "MER4_Xp11.3c"; transcript_id "MER4_Xp11.3c"; locus "MER4_Xp11.3c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0822"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HERVL_Xp11.3b ### chrX rmsk gene 45734542 45736651 . - . gene_id "HERVL_Xp11.3b"; transcript_id "HERVL_Xp11.3b"; locus "HERVL_Xp11.3b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1282"; model_cov "645"; model_pct "11.4"; chrX rmsk exon 45734542 45735079 4140 - . gene_id "HERVL_Xp11.3b"; transcript_id "HERVL_Xp11.3b"; locus "HERVL_Xp11.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1282"; repClass "LTR"; repEnd "2719"; repFamily "ERVL"; repLeft "2179"; repStart "-2935"; chrX rmsk exon 45736545 45736651 724 - . gene_id "HERVL_Xp11.3b"; transcript_id "HERVL_Xp11.3b"; locus "HERVL_Xp11.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1282"; repClass "LTR"; repEnd "2263"; repFamily "ERVL"; repLeft "2158"; repStart "-3391"; ### ERVLE_Xp11.3d ### chrX rmsk gene 45988976 45990066 . + . gene_id "ERVLE_Xp11.3d"; transcript_id "ERVLE_Xp11.3d"; locus "ERVLE_Xp11.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3663"; model_cov "1159"; model_pct "20.5"; chrX rmsk exon 45988976 45990066 3954 + . gene_id "ERVLE_Xp11.3d"; transcript_id "ERVLE_Xp11.3d"; locus "ERVLE_Xp11.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3663"; repClass "LTR"; repEnd "5275"; repFamily "ERVL"; repLeft "-392"; repStart "4116"; ### ERV316A3_Xp11.3c ### chrX rmsk gene 46162801 46166179 . - . gene_id "ERV316A3_Xp11.3c"; transcript_id "ERV316A3_Xp11.3c"; locus "ERV316A3_Xp11.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2781"; model_cov "3215"; model_pct "61.5"; chrX rmsk exon 46162801 46165498 5419 - . gene_id "ERV316A3_Xp11.3c"; transcript_id "ERV316A3_Xp11.3c"; locus "ERV316A3_Xp11.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2781"; repClass "LTR"; repEnd "2879"; repFamily "ERVL"; repLeft "-95"; repStart "-2347"; chrX rmsk exon 46165504 46165753 999 - . gene_id "ERV316A3_Xp11.3c"; transcript_id "ERV316A3_Xp11.3c"; locus "ERV316A3_Xp11.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2781"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "231"; repStart "-4754"; chrX rmsk exon 46165754 46166179 1595 - . gene_id "ERV316A3_Xp11.3c"; transcript_id "ERV316A3_Xp11.3c"; locus "ERV316A3_Xp11.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2781"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "3"; repStart "0"; ### HERVW_Xp11.3 ### chrX rmsk gene 46186895 46189578 . + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0306"; model_cov "2380"; model_pct "27.6"; chrX rmsk exon 46186895 46187204 2289 + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0306"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "-4872"; repStart "3445"; chrX rmsk exon 46187184 46188925 14021 + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0306"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-1479"; repStart "5405"; chrX rmsk exon 46188922 46188960 304 + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0306"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chrX rmsk exon 46188951 46189249 2104 + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0306"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chrX rmsk exon 46189250 46189578 2125 + . gene_id "HERVW_Xp11.3"; transcript_id "HERVW_Xp11.3"; locus "HERVW_Xp11.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0306"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVL_Xp11.3 ### chrX rmsk gene 46351905 46354414 . - . gene_id "ERVL_Xp11.3"; transcript_id "ERVL_Xp11.3"; locus "ERVL_Xp11.3"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0470"; model_cov "2027"; model_pct "35.2"; chrX rmsk exon 46351905 46352427 2834 - . gene_id "ERVL_Xp11.3"; transcript_id "ERVL_Xp11.3"; locus "ERVL_Xp11.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0470"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "1"; repStart "-55"; chrX rmsk exon 46352428 46354414 12875 - . gene_id "ERVL_Xp11.3"; transcript_id "ERVL_Xp11.3"; locus "ERVL_Xp11.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0470"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3730"; repStart "0"; ### ERVLB4_Xp11.3b ### chrX rmsk gene 46431469 46432720 . + . gene_id "ERVLB4_Xp11.3b"; transcript_id "ERVLB4_Xp11.3b"; locus "ERVLB4_Xp11.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1787"; model_cov "957"; model_pct "16.7"; chrX rmsk exon 46431469 46432391 5259 + . gene_id "ERVLB4_Xp11.3b"; transcript_id "ERVLB4_Xp11.3b"; locus "ERVLB4_Xp11.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1787"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4756"; chrX rmsk exon 46432393 46432720 1997 + . gene_id "ERVLB4_Xp11.3b"; transcript_id "ERVLB4_Xp11.3b"; locus "ERVLB4_Xp11.3b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1787"; repClass "LTR"; repEnd "323"; repFamily "ERVL"; repLeft "-74"; repStart "2"; ### HERVK11_Xp11.3 ### chrX rmsk gene 46486517 46490287 . - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0108"; model_cov "3202"; model_pct "40.3"; chrX rmsk exon 46486517 46487079 3315 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "6224"; repFamily "ERVK"; repLeft "5525"; repStart "-1729"; chrX rmsk exon 46487078 46487217 1005 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "4462"; repStart "-3352"; chrX rmsk exon 46487192 46488162 8424 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "3884"; repFamily "ERVK"; repLeft "2912"; repStart "-4069"; chrX rmsk exon 46488145 46488736 3154 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "1165"; repStart "-6368"; chrX rmsk exon 46488737 46489365 4383 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "206"; repStart "-7102"; chrX rmsk exon 46489354 46489682 2426 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "328"; repFamily "ERVK"; repLeft "1"; repStart "-7625"; chrX rmsk exon 46489700 46490287 4055 - . gene_id "HERVK11_Xp11.3"; transcript_id "HERVK11_Xp11.3"; locus "HERVK11_Xp11.3"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0108"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "472"; repStart "-14"; ### HERVL40_Xp11.3 ### chrX rmsk gene 47125036 47128367 . - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0462"; model_cov "1520"; model_pct "27.5"; chrX rmsk exon 47125036 47125394 1429 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "58"; repStart "-4"; chrX rmsk exon 47125396 47125658 855 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "5252"; repFamily "ERVL"; repLeft "5004"; repStart "-278"; chrX rmsk exon 47126067 47126444 1647 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "4956"; repFamily "ERVL"; repLeft "4590"; repStart "-574"; chrX rmsk exon 47127138 47127448 2825 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "4573"; repFamily "ERVL"; repLeft "4279"; repStart "-957"; chrX rmsk exon 47127747 47128197 2825 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "4278"; repFamily "ERVL"; repLeft "3816"; repStart "-1252"; chrX rmsk exon 47128194 47128263 516 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "3542"; repFamily "ERVL"; repLeft "3473"; repStart "-1988"; chrX rmsk exon 47128285 47128367 481 - . gene_id "HERVL40_Xp11.3"; transcript_id "HERVL40_Xp11.3"; locus "HERVL40_Xp11.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0462"; repClass "LTR"; repEnd "3420"; repFamily "ERVL"; repLeft "3339"; repStart "-2110"; ### HERVFH19_Xp11.3b ### chrX rmsk gene 47285349 47294133 . - . gene_id "HERVFH19_Xp11.3b"; transcript_id "HERVFH19_Xp11.3b"; locus "HERVFH19_Xp11.3b"; category "prototype"; intModel "HERVFH19-int"; locid "HERVFH19-int_0047"; model_cov "7715"; model_pct "99.9"; chrX rmsk exon 47285349 47285905 3815 - . gene_id "HERVFH19_Xp11.3b"; transcript_id "HERVFH19_Xp11.3b"; locus "HERVFH19_Xp11.3b"; repName "LTR19B"; geneRegion "ltr"; locid "HERVFH19-int_0047"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 47285909 47293583 57236 - . gene_id "HERVFH19_Xp11.3b"; transcript_id "HERVFH19_Xp11.3b"; locus "HERVFH19_Xp11.3b"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0047"; repClass "LTR"; repEnd "7716"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chrX rmsk exon 47293584 47294133 3867 - . gene_id "HERVFH19_Xp11.3b"; transcript_id "HERVFH19_Xp11.3b"; locus "HERVFH19_Xp11.3b"; repName "LTR19B"; geneRegion "ltr"; locid "HERVFH19-int_0047"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xp11.3c ### chrX rmsk gene 47395350 47401317 . - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1788"; model_cov "2560"; model_pct "44.8"; chrX rmsk exon 47395350 47395467 704 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "119"; repFamily "ERVL"; repLeft "1"; repStart "-278"; chrX rmsk exon 47395469 47395684 1464 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5490"; repStart "-2"; chrX rmsk exon 47395972 47396139 1464 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5489"; repFamily "ERVL"; repLeft "5327"; repStart "-225"; chrX rmsk exon 47396565 47396719 1567 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5335"; repFamily "ERVL"; repLeft "5172"; repStart "-379"; chrX rmsk exon 47397084 47397229 1567 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5171"; repFamily "ERVL"; repLeft "5022"; repStart "-543"; chrX rmsk exon 47397715 47397986 1772 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5034"; repFamily "ERVL"; repLeft "4763"; repStart "-680"; chrX rmsk exon 47398137 47398432 1187 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "4770"; repFamily "ERVL"; repLeft "4397"; repStart "-944"; chrX rmsk exon 47398428 47398488 1749 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5441"; repFamily "ERVL"; repLeft "5382"; repStart "-273"; chrX rmsk exon 47399102 47399668 1749 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "5381"; repFamily "ERVL"; repLeft "4769"; repStart "-333"; chrX rmsk exon 47400468 47400645 483 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "4604"; repStart "-961"; chrX rmsk exon 47400958 47401317 1138 - . gene_id "ERVLB4_Xp11.3c"; transcript_id "ERVLB4_Xp11.3c"; locus "ERVLB4_Xp11.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1788"; repClass "LTR"; repEnd "3866"; repFamily "ERVL"; repLeft "3466"; repStart "-1848"; ### ERV316A3_Xp11.23a ### chrX rmsk gene 47609171 47615053 . + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2783"; model_cov "4317"; model_pct "82.6"; chrX rmsk exon 47609171 47609577 1297 + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2783"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 47610067 47610978 1335 + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2783"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "-4436"; repStart "-185"; chrX rmsk exon 47610973 47612850 10788 + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2783"; repClass "LTR"; repEnd "3765"; repFamily "ERVL"; repLeft "-1461"; repStart "1883"; chrX rmsk exon 47613157 47614631 10788 + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2783"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "3766"; chrX rmsk exon 47614640 47615053 1446 + . gene_id "ERV316A3_Xp11.23a"; transcript_id "ERV316A3_Xp11.23a"; locus "ERV316A3_Xp11.23a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2783"; repClass "LTR"; repEnd "434"; repFamily "ERVL"; repLeft "-4"; repStart "22"; ### ERV316A3_Xp11.23b ### chrX rmsk gene 47748336 47750677 . - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2784"; model_cov "1449"; model_pct "27.7"; chrX rmsk exon 47748336 47748436 542 - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2784"; repClass "LTR"; repEnd "2068"; repFamily "ERVL"; repLeft "1966"; repStart "-3158"; chrX rmsk exon 47748435 47749189 2396 - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2784"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "590"; repStart "-3832"; chrX rmsk exon 47749701 47750035 1321 - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2784"; repClass "LTR"; repEnd "844"; repFamily "ERVL"; repLeft "504"; repStart "-4382"; chrX rmsk exon 47750070 47750272 698 - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2784"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "232"; repStart "-4791"; chrX rmsk exon 47750282 47750677 1495 - . gene_id "ERV316A3_Xp11.23b"; transcript_id "ERV316A3_Xp11.23b"; locus "ERV316A3_Xp11.23b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2784"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "6"; repStart "-8"; ### MER41_Xp11.23 ### chrX rmsk gene 47809182 47814037 . - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0567"; model_cov "4564"; model_pct "76.8"; chrX rmsk exon 47809182 47809617 3308 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0567"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "1"; repStart "-199"; chrX rmsk exon 47809620 47810519 5893 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "5044"; repStart "-3"; chrX rmsk exon 47810506 47810543 293 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "4222"; repFamily "ERV1"; repLeft "4185"; repStart "-1724"; chrX rmsk exon 47810570 47812461 9422 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "3533"; repFamily "ERV1"; repLeft "1063"; repStart "-2413"; chrX rmsk exon 47812437 47812897 3016 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "1789"; repFamily "ERV1"; repLeft "1332"; repStart "-4157"; chrX rmsk exon 47812882 47812976 4847 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "703"; repFamily "ERV1"; repLeft "610"; repStart "-5243"; chrX rmsk exon 47813272 47813887 4847 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0567"; repClass "LTR"; repEnd "609"; repFamily "ERV1"; repLeft "1"; repStart "-5337"; chrX rmsk exon 47813888 47814037 1071 - . gene_id "MER41_Xp11.23"; transcript_id "MER41_Xp11.23"; locus "MER41_Xp11.23"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0567"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "480"; repStart "0"; ### HERVL40_Xp11.23a ### chrX rmsk gene 47861370 47866265 . - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0464"; model_cov "2668"; model_pct "48.2"; chrX rmsk exon 47861370 47861436 398 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "70"; repFamily "ERVL"; repLeft "4"; repStart "-449"; chrX rmsk exon 47861439 47861801 911 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "5527"; repFamily "ERVL"; repLeft "5262"; repStart "-3"; chrX rmsk exon 47862225 47862245 286 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "5207"; repFamily "ERVL"; repLeft "5187"; repStart "-323"; chrX rmsk exon 47862552 47862674 286 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "5186"; repFamily "ERVL"; repLeft "5072"; repStart "-344"; chrX rmsk exon 47863922 47866120 9147 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "4246"; repFamily "ERVL"; repLeft "1977"; repStart "-1284"; chrX rmsk exon 47866128 47866265 614 - . gene_id "HERVL40_Xp11.23a"; transcript_id "HERVL40_Xp11.23a"; locus "HERVL40_Xp11.23a"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0464"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "306"; repStart "-15"; ### HERVL40_Xp11.23b ### chrX rmsk gene 47876353 47879821 . - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0465"; model_cov "1999"; model_pct "36.1"; chrX rmsk exon 47876353 47876468 343 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "285"; repFamily "ERVL"; repLeft "189"; repStart "-180"; chrX rmsk exon 47876491 47876616 586 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "133"; repFamily "ERVL"; repLeft "4"; repStart "-332"; chrX rmsk exon 47876624 47878182 4318 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "1966"; repFamily "ERVL"; repLeft "422"; repStart "-3564"; chrX rmsk exon 47878334 47878477 548 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "1176"; repFamily "ERVL"; repLeft "1032"; repStart "-4354"; chrX rmsk exon 47878508 47878743 1103 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "329"; repFamily "ERVL"; repLeft "73"; repStart "-5201"; chrX rmsk exon 47879264 47879326 1103 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "72"; repFamily "ERVL"; repLeft "17"; repStart "-5458"; chrX rmsk exon 47879341 47879821 2027 - . gene_id "HERVL40_Xp11.23b"; transcript_id "HERVL40_Xp11.23b"; locus "HERVL40_Xp11.23b"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0465"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLB4_Xp11.23a ### chrX rmsk gene 47890415 47893045 . - . gene_id "ERVLB4_Xp11.23a"; transcript_id "ERVLB4_Xp11.23a"; locus "ERVLB4_Xp11.23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1789"; model_cov "2696"; model_pct "47.2"; chrX rmsk exon 47890415 47893045 16251 - . gene_id "ERVLB4_Xp11.23a"; transcript_id "ERVLB4_Xp11.23a"; locus "ERVLB4_Xp11.23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1789"; repClass "LTR"; repEnd "3317"; repFamily "ERVL"; repLeft "621"; repStart "-2397"; ### PABLA_Xp11.23 ### chrX rmsk gene 47934525 47936270 . + . gene_id "PABLA_Xp11.23"; transcript_id "PABLA_Xp11.23"; locus "PABLA_Xp11.23"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0156"; model_cov "1891"; model_pct "37.7"; chrX rmsk exon 47934525 47936270 6220 + . gene_id "PABLA_Xp11.23"; transcript_id "PABLA_Xp11.23"; locus "PABLA_Xp11.23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0156"; repClass "LTR"; repEnd "4784"; repFamily "ERV1"; repLeft "-231"; repStart "2893"; ### HERVL_Xp11.23 ### chrX rmsk gene 47985710 47987130 . + . gene_id "HERVL_Xp11.23"; transcript_id "HERVL_Xp11.23"; locus "HERVL_Xp11.23"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1283"; model_cov "880"; model_pct "15.6"; chrX rmsk exon 47985710 47986591 6730 + . gene_id "HERVL_Xp11.23"; transcript_id "HERVL_Xp11.23"; locus "HERVL_Xp11.23"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1283"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4774"; chrX rmsk exon 47986592 47987130 2108 + . gene_id "HERVL_Xp11.23"; transcript_id "HERVL_Xp11.23"; locus "HERVL_Xp11.23"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1283"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### MER101_Xp11.23 ### chrX rmsk gene 48235524 48236044 . - . gene_id "MER101_Xp11.23"; transcript_id "MER101_Xp11.23"; locus "MER101_Xp11.23"; category "internal"; intModel "MER101-int"; locid "MER101-int_0430"; model_cov "682"; model_pct "10.3"; chrX rmsk exon 48235524 48235895 799 - . gene_id "MER101_Xp11.23"; transcript_id "MER101_Xp11.23"; locus "MER101_Xp11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0430"; repClass "LTR"; repEnd "2861"; repFamily "ERV1"; repLeft "2303"; repStart "-3778"; chrX rmsk exon 48235924 48236044 522 - . gene_id "MER101_Xp11.23"; transcript_id "MER101_Xp11.23"; locus "MER101_Xp11.23"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0430"; repClass "LTR"; repEnd "10"; repFamily "ERV1"; repLeft "-114"; repStart "-6629"; ### ERVLB4_Xp11.23b ### chrX rmsk gene 48756178 48759374 . + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1790"; model_cov "1347"; model_pct "23.6"; chrX rmsk exon 48756178 48756447 1633 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "2532"; repFamily "ERVL"; repLeft "-3182"; repStart "2268"; chrX rmsk exon 48756567 48756805 7224 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "2892"; repFamily "ERVL"; repLeft "-2822"; repStart "2653"; chrX rmsk exon 48757111 48757463 7224 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "3230"; repFamily "ERVL"; repLeft "-2484"; repStart "2893"; chrX rmsk exon 48757733 48757820 7224 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "3301"; repFamily "ERVL"; repLeft "-2413"; repStart "3231"; chrX rmsk exon 48758132 48758580 7224 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "3739"; repFamily "ERVL"; repLeft "-1975"; repStart "3302"; chrX rmsk exon 48758602 48758882 1835 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "310"; repFamily "ERVL"; repLeft "-210"; repStart "1"; chrX rmsk exon 48759195 48759374 1835 + . gene_id "ERVLB4_Xp11.23b"; transcript_id "ERVLB4_Xp11.23b"; locus "ERVLB4_Xp11.23b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1790"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "-1"; repStart "311"; ### HARLEQUIN_Xp11.23 ### chrX rmsk gene 48853724 48861796 . + . gene_id "HARLEQUIN_Xp11.23"; transcript_id "HARLEQUIN_Xp11.23"; locus "HARLEQUIN_Xp11.23"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0179"; model_cov "6894"; model_pct "100.0"; chrX rmsk exon 48853724 48854172 3667 + . gene_id "HARLEQUIN_Xp11.23"; transcript_id "HARLEQUIN_Xp11.23"; locus "HARLEQUIN_Xp11.23"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0179"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 48854173 48856604 55704 + . gene_id "HARLEQUIN_Xp11.23"; transcript_id "HARLEQUIN_Xp11.23"; locus "HARLEQUIN_Xp11.23"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0179"; repClass "LTR"; repEnd "2443"; repFamily "ERV1"; repLeft "-4453"; repStart "1"; chrX rmsk exon 48856888 48861338 55704 + . gene_id "HARLEQUIN_Xp11.23"; transcript_id "HARLEQUIN_Xp11.23"; locus "HARLEQUIN_Xp11.23"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0179"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "2444"; chrX rmsk exon 48861339 48861796 3660 + . gene_id "HARLEQUIN_Xp11.23"; transcript_id "HARLEQUIN_Xp11.23"; locus "HARLEQUIN_Xp11.23"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0179"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVE_Xp11.23 ### chrX rmsk gene 49139563 49149008 . - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0162"; model_cov "7885"; model_pct "100.0"; chrX rmsk exon 49139563 49139966 1676 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 49139967 49144004 24720 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "3832"; repStart "-2"; chrX rmsk exon 49144307 49144422 24720 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "3831"; repFamily "ERV1"; repLeft "3736"; repStart "-3982"; chrX rmsk exon 49144807 49148192 20402 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "3740"; repFamily "ERV1"; repLeft "312"; repStart "-4073"; chrX rmsk exon 49148261 49148648 2715 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "350"; repFamily "ERV1"; repLeft "-33"; repStart "-7463"; chrX rmsk exon 49148652 49148812 1062 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "292"; repStart "-48"; chrX rmsk exon 49148833 49149008 544 - . gene_id "HERVE_Xp11.23"; transcript_id "HERVE_Xp11.23"; locus "HERVE_Xp11.23"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0162"; repClass "LTR"; repEnd "238"; repFamily "ERV1"; repLeft "39"; repStart "-263"; ### ERV316A3_Xp11.23c ### chrX rmsk gene 49634729 49636886 . + . gene_id "ERV316A3_Xp11.23c"; transcript_id "ERV316A3_Xp11.23c"; locus "ERV316A3_Xp11.23c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2785"; model_cov "1331"; model_pct "25.5"; chrX rmsk exon 49634729 49635093 4911 + . gene_id "ERV316A3_Xp11.23c"; transcript_id "ERV316A3_Xp11.23c"; locus "ERV316A3_Xp11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2785"; repClass "LTR"; repEnd "2081"; repFamily "ERVL"; repLeft "-3145"; repStart "1752"; chrX rmsk exon 49635600 49636253 4911 + . gene_id "ERV316A3_Xp11.23c"; transcript_id "ERV316A3_Xp11.23c"; locus "ERV316A3_Xp11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2785"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "2082"; chrX rmsk exon 49636541 49636886 4911 + . gene_id "ERV316A3_Xp11.23c"; transcript_id "ERV316A3_Xp11.23c"; locus "ERV316A3_Xp11.23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2785"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2141"; repStart "2747"; ### ERV316A3_Xp11.23d ### chrX rmsk gene 49853505 49855494 . - . gene_id "ERV316A3_Xp11.23d"; transcript_id "ERV316A3_Xp11.23d"; locus "ERV316A3_Xp11.23d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2787"; model_cov "1570"; model_pct "30.0"; chrX rmsk exon 49853505 49855049 5261 - . gene_id "ERV316A3_Xp11.23d"; transcript_id "ERV316A3_Xp11.23d"; locus "ERV316A3_Xp11.23d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2787"; repClass "LTR"; repEnd "1573"; repFamily "ERVL"; repLeft "3"; repStart "-3653"; chrX rmsk exon 49855050 49855494 2014 - . gene_id "ERV316A3_Xp11.23d"; transcript_id "ERV316A3_Xp11.23d"; locus "ERV316A3_Xp11.23d"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2787"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HERVEA_Xp11.22 ### chrX rmsk gene 50330000 50338720 . - . gene_id "HERVEA_Xp11.22"; transcript_id "HERVEA_Xp11.22"; locus "HERVEA_Xp11.22"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0103"; model_cov "7844"; model_pct "100.0"; chrX rmsk exon 50330000 50330457 2939 - . gene_id "HERVEA_Xp11.22"; transcript_id "HERVEA_Xp11.22"; locus "HERVEA_Xp11.22"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0103"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 50330462 50338257 53429 - . gene_id "HERVEA_Xp11.22"; transcript_id "HERVEA_Xp11.22"; locus "HERVEA_Xp11.22"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0103"; repClass "LTR"; repEnd "7845"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 50338258 50338720 3149 - . gene_id "HERVEA_Xp11.22"; transcript_id "HERVEA_Xp11.22"; locus "HERVEA_Xp11.22"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0103"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_Xp11.22 ### chrX rmsk gene 50723658 50724200 . + . gene_id "HERVH_Xp11.22"; transcript_id "HERVH_Xp11.22"; locus "HERVH_Xp11.22"; category "internal"; intModel "HERVH-int"; locid "HERVH-int_1237"; model_cov "988"; model_pct "12.8"; chrX rmsk exon 50723658 50724200 3103 + . gene_id "HERVH_Xp11.22"; transcript_id "HERVH_Xp11.22"; locus "HERVH_Xp11.22"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1237"; repClass "LTR"; repEnd "2663"; repFamily "ERV1"; repLeft "-5050"; repStart "1675"; ### HUERSP1_Xp11.22 ### chrX rmsk gene 50842429 50851499 . - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0217"; model_cov "5607"; model_pct "89.5"; chrX rmsk exon 50842429 50843118 5186 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 50843119 50843983 12042 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5405"; repStart "0"; chrX rmsk exon 50844284 50844737 19674 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "4754"; repFamily "ERV1"; repLeft "4636"; repStart "-1509"; chrX rmsk exon 50845044 50846636 19674 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "4635"; repFamily "ERV1"; repLeft "3047"; repStart "-1628"; chrX rmsk exon 50846948 50847889 19674 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "3046"; repFamily "ERV1"; repLeft "2057"; repStart "-3217"; chrX rmsk exon 50848513 50848693 19674 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "2056"; repFamily "ERV1"; repLeft "1904"; repStart "-4207"; chrX rmsk exon 50848988 50850773 19674 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "1903"; repFamily "ERV1"; repLeft "1"; repStart "-4360"; chrX rmsk exon 50850774 50851499 4871 - . gene_id "HUERSP1_Xp11.22"; transcript_id "HUERSP1_Xp11.22"; locus "HUERSP1_Xp11.22"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0217"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_Xp11.22a ### chrX rmsk gene 50979038 50984288 . + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0385"; model_cov "5467"; model_pct "100.0"; chrX rmsk exon 50979038 50979360 1706 + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0385"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 50979361 50979927 1129 + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0385"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chrX rmsk exon 50979956 50981950 21041 + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0385"; repClass "LTR"; repEnd "4520"; repFamily "ERV1"; repLeft "-697"; repStart "1520"; chrX rmsk exon 50982259 50983980 21041 + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0385"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "3455"; chrX rmsk exon 50983981 50984288 1713 + . gene_id "MER61_Xp11.22a"; transcript_id "MER61_Xp11.22a"; locus "MER61_Xp11.22a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0385"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_Xp11.22a ### chrX rmsk gene 51045789 51046612 . + . gene_id "ERV316A3_Xp11.22a"; transcript_id "ERV316A3_Xp11.22a"; locus "ERV316A3_Xp11.22a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2788"; model_cov "816"; model_pct "15.6"; chrX rmsk exon 51045789 51046612 2300 + . gene_id "ERV316A3_Xp11.22a"; transcript_id "ERV316A3_Xp11.22a"; locus "ERV316A3_Xp11.22a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2788"; repClass "LTR"; repEnd "1663"; repFamily "ERVL"; repLeft "-3563"; repStart "847"; ### ERV316A3_Xp11.22b ### chrX rmsk gene 51055137 51059227 . - . gene_id "ERV316A3_Xp11.22b"; transcript_id "ERV316A3_Xp11.22b"; locus "ERV316A3_Xp11.22b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2789"; model_cov "3278"; model_pct "62.7"; chrX rmsk exon 51055137 51056427 4233 - . gene_id "ERV316A3_Xp11.22b"; transcript_id "ERV316A3_Xp11.22b"; locus "ERV316A3_Xp11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2789"; repClass "LTR"; repEnd "4919"; repFamily "ERVL"; repLeft "3625"; repStart "-307"; chrX rmsk exon 51056965 51058960 4544 - . gene_id "ERV316A3_Xp11.22b"; transcript_id "ERV316A3_Xp11.22b"; locus "ERV316A3_Xp11.22b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2789"; repClass "LTR"; repEnd "1989"; repFamily "ERVL"; repLeft "5"; repStart "-3237"; chrX rmsk exon 51058962 51059227 509 - . gene_id "ERV316A3_Xp11.22b"; transcript_id "ERV316A3_Xp11.22b"; locus "ERV316A3_Xp11.22b"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2789"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "174"; repStart "-11"; ### ERV316A3_Xp11.22c ### chrX rmsk gene 51133519 51139979 . + . gene_id "ERV316A3_Xp11.22c"; transcript_id "ERV316A3_Xp11.22c"; locus "ERV316A3_Xp11.22c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2790"; model_cov "5245"; model_pct "100.0"; chrX rmsk exon 51133519 51135707 5041 + . gene_id "ERV316A3_Xp11.22c"; transcript_id "ERV316A3_Xp11.22c"; locus "ERV316A3_Xp11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2790"; repClass "LTR"; repEnd "2188"; repFamily "ERVL"; repLeft "-3038"; repStart "3"; chrX rmsk exon 51136413 51136960 1315 + . gene_id "ERV316A3_Xp11.22c"; transcript_id "ERV316A3_Xp11.22c"; locus "ERV316A3_Xp11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2790"; repClass "LTR"; repEnd "3119"; repFamily "ERVL"; repLeft "-2107"; repStart "2575"; chrX rmsk exon 51137523 51139979 7276 + . gene_id "ERV316A3_Xp11.22c"; transcript_id "ERV316A3_Xp11.22c"; locus "ERV316A3_Xp11.22c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2790"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2710"; ### ERV316A3_Xp11.22d ### chrX rmsk gene 51151293 51151955 . - . gene_id "ERV316A3_Xp11.22d"; transcript_id "ERV316A3_Xp11.22d"; locus "ERV316A3_Xp11.22d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2791"; model_cov "616"; model_pct "11.8"; chrX rmsk exon 51151293 51151955 1679 - . gene_id "ERV316A3_Xp11.22d"; transcript_id "ERV316A3_Xp11.22d"; locus "ERV316A3_Xp11.22d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2791"; repClass "LTR"; repEnd "1664"; repFamily "ERVL"; repLeft "1048"; repStart "-3562"; ### PRIMA4_Xp11.22 ### chrX rmsk gene 51164218 51166974 . - . gene_id "PRIMA4_Xp11.22"; transcript_id "PRIMA4_Xp11.22"; locus "PRIMA4_Xp11.22"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0237"; model_cov "1770"; model_pct "21.4"; chrX rmsk exon 51164218 51165191 1745 - . gene_id "PRIMA4_Xp11.22"; transcript_id "PRIMA4_Xp11.22"; locus "PRIMA4_Xp11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0237"; repClass "LTR"; repEnd "6495"; repFamily "ERV1"; repLeft "5519"; repStart "-1775"; chrX rmsk exon 51165822 51166436 773 - . gene_id "PRIMA4_Xp11.22"; transcript_id "PRIMA4_Xp11.22"; locus "PRIMA4_Xp11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0237"; repClass "LTR"; repEnd "3783"; repFamily "ERV1"; repLeft "3368"; repStart "-4487"; chrX rmsk exon 51166605 51166974 538 - . gene_id "PRIMA4_Xp11.22"; transcript_id "PRIMA4_Xp11.22"; locus "PRIMA4_Xp11.22"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0237"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "2908"; repStart "-4983"; ### ERVLB4_Xp11.22a ### chrX rmsk gene 51343188 51346825 . - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1791"; model_cov "2604"; model_pct "45.6"; chrX rmsk exon 51343188 51343518 1216 - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1791"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "83"; repStart "0"; chrX rmsk exon 51343548 51344890 15807 - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1791"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4318"; repStart "0"; chrX rmsk exon 51345312 51346064 15807 - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1791"; repClass "LTR"; repEnd "4317"; repFamily "ERVL"; repLeft "3549"; repStart "-1397"; chrX rmsk exon 51346090 51346364 15807 - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1791"; repClass "LTR"; repEnd "3548"; repFamily "ERVL"; repLeft "3250"; repStart "-2166"; chrX rmsk exon 51346709 51346825 15807 - . gene_id "ERVLB4_Xp11.22a"; transcript_id "ERVLB4_Xp11.22a"; locus "ERVLB4_Xp11.22a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1791"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "3107"; repStart "-2465"; ### ERVLB4_Xp11.22b ### chrX rmsk gene 51347038 51348687 . - . gene_id "ERVLB4_Xp11.22b"; transcript_id "ERVLB4_Xp11.22b"; locus "ERVLB4_Xp11.22b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1792"; model_cov "1474"; model_pct "25.8"; chrX rmsk exon 51347038 51347736 15807 - . gene_id "ERVLB4_Xp11.22b"; transcript_id "ERVLB4_Xp11.22b"; locus "ERVLB4_Xp11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1792"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "2390"; repStart "-2465"; chrX rmsk exon 51348101 51348687 15807 - . gene_id "ERVLB4_Xp11.22b"; transcript_id "ERVLB4_Xp11.22b"; locus "ERVLB4_Xp11.22b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1792"; repClass "LTR"; repEnd "2246"; repFamily "ERVL"; repLeft "1631"; repStart "-3468"; ### MER101_Xp11.22 ### chrX rmsk gene 51416304 51420439 . + . gene_id "MER101_Xp11.22"; transcript_id "MER101_Xp11.22"; locus "MER101_Xp11.22"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0437"; model_cov "3124"; model_pct "47.1"; chrX rmsk exon 51416304 51416761 2934 + . gene_id "MER101_Xp11.22"; transcript_id "MER101_Xp11.22"; locus "MER101_Xp11.22"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0437"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 51416762 51417193 10076 + . gene_id "MER101_Xp11.22"; transcript_id "MER101_Xp11.22"; locus "MER101_Xp11.22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0437"; repClass "LTR"; repEnd "403"; repFamily "ERV1"; repLeft "-6236"; repStart "1"; chrX rmsk exon 51417818 51420439 10076 + . gene_id "MER101_Xp11.22"; transcript_id "MER101_Xp11.22"; locus "MER101_Xp11.22"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0437"; repClass "LTR"; repEnd "3126"; repFamily "ERV1"; repLeft "-3513"; repStart "404"; ### ERVLB4_Xp11.22c ### chrX rmsk gene 51448586 51450600 . + . gene_id "ERVLB4_Xp11.22c"; transcript_id "ERVLB4_Xp11.22c"; locus "ERVLB4_Xp11.22c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1793"; model_cov "1896"; model_pct "33.2"; chrX rmsk exon 51448586 51450437 10866 + . gene_id "ERVLB4_Xp11.22c"; transcript_id "ERVLB4_Xp11.22c"; locus "ERVLB4_Xp11.22c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1793"; repClass "LTR"; repEnd "2524"; repFamily "ERVL"; repLeft "-3190"; repStart "628"; chrX rmsk exon 51450438 51450600 691 + . gene_id "ERVLB4_Xp11.22c"; transcript_id "ERVLB4_Xp11.22c"; locus "ERVLB4_Xp11.22c"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1793"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "390"; ### HUERSP3_Xp11.22 ### chrX rmsk gene 51456158 51462181 . + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0220"; model_cov "4595"; model_pct "51.5"; chrX rmsk exon 51456158 51456769 2996 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "8"; chrX rmsk exon 51456793 51456859 387 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "1596"; repFamily "ERV1"; repLeft "-7323"; repStart "1535"; chrX rmsk exon 51456866 51456982 741 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "2030"; repFamily "ERV1"; repLeft "-6889"; repStart "1912"; chrX rmsk exon 51456987 51459205 7821 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "764"; chrX rmsk exon 51459199 51459323 545 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4539"; chrX rmsk exon 51459325 51459986 4184 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "-3342"; repStart "4901"; chrX rmsk exon 51459954 51460724 4406 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6143"; chrX rmsk exon 51460744 51460836 435 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "8446"; repFamily "ERV1"; repLeft "-473"; repStart "8355"; chrX rmsk exon 51461309 51461569 1220 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "8701"; chrX rmsk exon 51461576 51462181 3075 + . gene_id "HUERSP3_Xp11.22"; transcript_id "HUERSP3_Xp11.22"; locus "HUERSP3_Xp11.22"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0220"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "10"; ### MER61_Xp11.22b ### chrX rmsk gene 51557828 51564017 . - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0386"; model_cov "4514"; model_pct "86.5"; chrX rmsk exon 51557828 51558172 1618 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0386"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chrX rmsk exon 51558173 51560760 25078 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2556"; repStart "0"; chrX rmsk exon 51561065 51562244 25078 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "2555"; repFamily "ERV1"; repLeft "1393"; repStart "-2662"; chrX rmsk exon 51562250 51562493 1978 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "1272"; repFamily "ERV1"; repLeft "1028"; repStart "-3945"; chrX rmsk exon 51563090 51563166 1978 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "1027"; repFamily "ERV1"; repLeft "958"; repStart "-4190"; chrX rmsk exon 51563167 51563260 623 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "748"; repStart "-4377"; chrX rmsk exon 51563332 51563505 640 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "353"; repFamily "ERV1"; repLeft "181"; repStart "-4864"; chrX rmsk exon 51563535 51563652 734 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0386"; repClass "LTR"; repEnd "115"; repFamily "ERV1"; repLeft "1"; repStart "-5102"; chrX rmsk exon 51563661 51564017 1644 - . gene_id "MER61_Xp11.22b"; transcript_id "MER61_Xp11.22b"; locus "MER61_Xp11.22b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0386"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### MER4B_Xp11.22 ### chrX rmsk gene 51769323 51778397 . + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0491"; model_cov "6798"; model_pct "100.0"; chrX rmsk exon 51769323 51769921 2604 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 51769922 51770648 4180 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "724"; repFamily "ERV1"; repLeft "-6034"; repStart "1"; chrX rmsk exon 51770941 51771041 4180 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "-5912"; repStart "725"; chrX rmsk exon 51771064 51771415 1413 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "6384"; repFamily "ERV1"; repLeft "-374"; repStart "5894"; chrX rmsk exon 51771422 51771681 4300 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "1760"; repFamily "ERV1"; repLeft "-4998"; repStart "1506"; chrX rmsk exon 51771736 51772112 4300 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "2120"; repFamily "ERV1"; repLeft "-4638"; repStart "1761"; chrX rmsk exon 51772414 51772582 4300 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "2330"; repFamily "ERV1"; repLeft "-4428"; repStart "2121"; chrX rmsk exon 51772893 51774509 7915 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "3006"; repFamily "ERV1"; repLeft "-3752"; repStart "1438"; chrX rmsk exon 51774811 51774905 7915 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "-3663"; repStart "3007"; chrX rmsk exon 51774892 51775555 4143 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3421"; chrX rmsk exon 51775555 51777731 12123 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "6717"; repFamily "ERV1"; repLeft "-41"; repStart "4452"; chrX rmsk exon 51777751 51777805 394 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6704"; chrX rmsk exon 51777806 51778397 2679 + . gene_id "MER4B_Xp11.22"; transcript_id "MER4B_Xp11.22"; locus "MER4B_Xp11.22"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0491"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xp11.22d ### chrX rmsk gene 52096432 52100050 . - . gene_id "ERVLB4_Xp11.22d"; transcript_id "ERVLB4_Xp11.22d"; locus "ERVLB4_Xp11.22d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1794"; model_cov "3407"; model_pct "59.6"; chrX rmsk exon 52096432 52096909 19556 - . gene_id "ERVLB4_Xp11.22d"; transcript_id "ERVLB4_Xp11.22d"; locus "ERVLB4_Xp11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1794"; repClass "LTR"; repEnd "4424"; repFamily "ERVL"; repLeft "3939"; repStart "-1290"; chrX rmsk exon 52097208 52100050 19556 - . gene_id "ERVLB4_Xp11.22d"; transcript_id "ERVLB4_Xp11.22d"; locus "ERVLB4_Xp11.22d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1794"; repClass "LTR"; repEnd "3938"; repFamily "ERVL"; repLeft "1016"; repStart "-1776"; ### ERVLB4_Xp11.22e ### chrX rmsk gene 52328985 52331570 . - . gene_id "ERVLB4_Xp11.22e"; transcript_id "ERVLB4_Xp11.22e"; locus "ERVLB4_Xp11.22e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1795"; model_cov "2103"; model_pct "36.8"; chrX rmsk exon 52328985 52329032 236 - . gene_id "ERVLB4_Xp11.22e"; transcript_id "ERVLB4_Xp11.22e"; locus "ERVLB4_Xp11.22e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1795"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "361"; repStart "-2"; chrX rmsk exon 52329124 52329504 1832 - . gene_id "ERVLB4_Xp11.22e"; transcript_id "ERVLB4_Xp11.22e"; locus "ERVLB4_Xp11.22e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1795"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "1"; repStart "-48"; chrX rmsk exon 52329505 52331570 12302 - . gene_id "ERVLB4_Xp11.22e"; transcript_id "ERVLB4_Xp11.22e"; locus "ERVLB4_Xp11.22e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1795"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3611"; repStart "0"; ### ERVL_Xp11.22a ### chrX rmsk gene 53150801 53156783 . - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0472"; model_cov "3967"; model_pct "68.9"; chrX rmsk exon 53150801 53151306 2710 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 53151307 53153958 23817 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "3014"; repStart "0"; chrX rmsk exon 53154314 53154398 23817 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "2932"; repStart "-2744"; chrX rmsk exon 53154841 53155062 23817 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "2929"; repFamily "ERVL"; repLeft "2724"; repStart "-2828"; chrX rmsk exon 53155376 53155706 23817 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "2723"; repFamily "ERVL"; repLeft "2381"; repStart "-3034"; chrX rmsk exon 53156210 53156783 23817 - . gene_id "ERVL_Xp11.22a"; transcript_id "ERVL_Xp11.22a"; locus "ERVL_Xp11.22a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0472"; repClass "LTR"; repEnd "2380"; repFamily "ERVL"; repLeft "1784"; repStart "-3377"; ### HML6_Xp11.22 ### chrX rmsk gene 53159114 53163826 . - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0099"; model_cov "3874"; model_pct "53.8"; chrX rmsk exon 53159114 53159544 2656 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "422"; repFamily "ERVK"; repLeft "1"; repStart "-62"; chrX rmsk exon 53159545 53159639 604 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "7109"; repStart "0"; chrX rmsk exon 53159659 53160870 8415 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "4078"; repStart "-1885"; chrX rmsk exon 53160858 53162417 10540 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "2869"; repFamily "ERVK"; repLeft "1295"; repStart "-4333"; chrX rmsk exon 53162416 53163358 6491 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "991"; repFamily "ERVK"; repLeft "23"; repStart "-6211"; chrX rmsk exon 53163359 53163826 2834 - . gene_id "HML6_Xp11.22"; transcript_id "HML6_Xp11.22"; locus "HML6_Xp11.22"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0099"; repClass "LTR"; repEnd "466"; repFamily "ERVK"; repLeft "1"; repStart "-18"; ### HUERSP3B_Xp11.22 ### chrX rmsk gene 53164578 53168402 . + . gene_id "HUERSP3B_Xp11.22"; transcript_id "HUERSP3B_Xp11.22"; locus "HUERSP3B_Xp11.22"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0140"; model_cov "3101"; model_pct "41.8"; chrX rmsk exon 53164578 53164712 954 + . gene_id "HUERSP3B_Xp11.22"; transcript_id "HUERSP3B_Xp11.22"; locus "HUERSP3B_Xp11.22"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0140"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-498"; repStart "1"; chrX rmsk exon 53164845 53165646 6116 + . gene_id "HUERSP3B_Xp11.22"; transcript_id "HUERSP3B_Xp11.22"; locus "HUERSP3B_Xp11.22"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0140"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "3073"; chrX rmsk exon 53165641 53168219 16372 + . gene_id "HUERSP3B_Xp11.22"; transcript_id "HUERSP3B_Xp11.22"; locus "HUERSP3B_Xp11.22"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0140"; repClass "LTR"; repEnd "7405"; repFamily "ERV1"; repLeft "-13"; repStart "5105"; chrX rmsk exon 53168227 53168402 1323 + . gene_id "HUERSP3B_Xp11.22"; transcript_id "HUERSP3B_Xp11.22"; locus "HUERSP3B_Xp11.22"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0140"; repClass "LTR"; repEnd "187"; repFamily "ERV1"; repLeft "-457"; repStart "1"; ### ERVLE_Xp11.22a ### chrX rmsk gene 53184811 53187244 . + . gene_id "ERVLE_Xp11.22a"; transcript_id "ERVLE_Xp11.22a"; locus "ERVLE_Xp11.22a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3667"; model_cov "1975"; model_pct "34.9"; chrX rmsk exon 53184811 53185108 1114 + . gene_id "ERVLE_Xp11.22a"; transcript_id "ERVLE_Xp11.22a"; locus "ERVLE_Xp11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3667"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "-4381"; repStart "976"; chrX rmsk exon 53185524 53186234 1628 + . gene_id "ERVLE_Xp11.22a"; transcript_id "ERVLE_Xp11.22a"; locus "ERVLE_Xp11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3667"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "-3556"; repStart "1240"; chrX rmsk exon 53186510 53187244 2953 + . gene_id "ERVLE_Xp11.22a"; transcript_id "ERVLE_Xp11.22a"; locus "ERVLE_Xp11.22a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3667"; repClass "LTR"; repEnd "4211"; repFamily "ERVL"; repLeft "-1456"; repStart "3417"; ### ERVL_Xp11.22b ### chrX rmsk gene 53475045 53477118 . + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0473"; model_cov "897"; model_pct "15.6"; chrX rmsk exon 53475045 53475090 306 + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0473"; repClass "LTR"; repEnd "46"; repFamily "ERVL"; repLeft "-510"; repStart "1"; chrX rmsk exon 53475091 53475257 4427 + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0473"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-764"; repStart "4858"; chrX rmsk exon 53475570 53475995 4427 + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0473"; repClass "LTR"; repEnd "5466"; repFamily "ERVL"; repLeft "-291"; repStart "4994"; chrX rmsk exon 53476295 53476554 4427 + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0473"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5467"; chrX rmsk exon 53476555 53477118 3152 + . gene_id "ERVL_Xp11.22b"; transcript_id "ERVL_Xp11.22b"; locus "ERVL_Xp11.22b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0473"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### ERVL_Xp11.22c ### chrX rmsk gene 53482608 53491591 . - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; category "unknown"; intModel "ERVL-int"; locid "ERVL-int_0474"; model_cov "5446"; model_pct "94.6"; chrX rmsk exon 53482608 53483124 8720 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "5675"; repFamily "ERVL"; repLeft "5166"; repStart "-82"; chrX rmsk exon 53483427 53485462 8720 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "5165"; repFamily "ERVL"; repLeft "3049"; repStart "-592"; chrX rmsk exon 53485758 53485787 8720 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "3048"; repFamily "ERVL"; repLeft "3037"; repStart "-2709"; chrX rmsk exon 53486092 53486267 8720 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "2859"; repStart "-2721"; chrX rmsk exon 53486275 53486592 1762 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "112"; repStart "0"; chrX rmsk exon 53487593 53488247 6837 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "2819"; repFamily "ERVL"; repLeft "2190"; repStart "-2938"; chrX rmsk exon 53488527 53488914 6837 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "2189"; repFamily "ERVL"; repLeft "1795"; repStart "-3568"; chrX rmsk exon 53489057 53489081 6837 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "1768"; repStart "-3963"; chrX rmsk exon 53489377 53490533 6837 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "565"; repStart "-3990"; chrX rmsk exon 53490577 53490643 341 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "414"; repStart "-5279"; chrX rmsk exon 53491275 53491591 341 - . gene_id "ERVL_Xp11.22c"; transcript_id "ERVL_Xp11.22c"; locus "ERVL_Xp11.22c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0474"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "95"; repStart "-5344"; ### HARLEQUIN_Xp11.22 ### chrX rmsk gene 53512675 53520776 . + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0181"; model_cov "6893"; model_pct "100.0"; chrX rmsk exon 53512675 53513137 3969 + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0181"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 53513138 53514245 55870 + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0181"; repClass "LTR"; repEnd "1124"; repFamily "ERV1"; repLeft "-5772"; repStart "1"; chrX rmsk exon 53514305 53519483 55870 + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0181"; repClass "LTR"; repEnd "6379"; repFamily "ERV1"; repLeft "-517"; repStart "1125"; chrX rmsk exon 53519789 53520315 55870 + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0181"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6380"; chrX rmsk exon 53520316 53520776 3763 + . gene_id "HARLEQUIN_Xp11.22"; transcript_id "HARLEQUIN_Xp11.22"; locus "HARLEQUIN_Xp11.22"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0181"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_Xp11.22b ### chrX rmsk gene 53649641 53650544 . - . gene_id "ERVLE_Xp11.22b"; transcript_id "ERVLE_Xp11.22b"; locus "ERVLE_Xp11.22b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3669"; model_cov "908"; model_pct "16.0"; chrX rmsk exon 53649641 53650544 2505 - . gene_id "ERVLE_Xp11.22b"; transcript_id "ERVLE_Xp11.22b"; locus "ERVLE_Xp11.22b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3669"; repClass "LTR"; repEnd "3518"; repFamily "ERVL"; repLeft "2610"; repStart "-2149"; ### ERVLE_Xp11.22c ### chrX rmsk gene 53761264 53764631 . + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3670"; model_cov "2240"; model_pct "39.5"; chrX rmsk exon 53761264 53761884 1653 + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3670"; repClass "LTR"; repEnd "3703"; repFamily "ERVL"; repLeft "-1964"; repStart "3100"; chrX rmsk exon 53762835 53762952 291 + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3670"; repClass "LTR"; repEnd "3847"; repFamily "ERVL"; repLeft "-1820"; repStart "3707"; chrX rmsk exon 53763109 53764148 1950 + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3670"; repClass "LTR"; repEnd "5119"; repFamily "ERVL"; repLeft "-548"; repStart "3977"; chrX rmsk exon 53764270 53764525 480 + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3670"; repClass "LTR"; repEnd "5313"; repFamily "ERVL"; repLeft "-354"; repStart "5029"; chrX rmsk exon 53764556 53764631 480 + . gene_id "ERVLE_Xp11.22c"; transcript_id "ERVLE_Xp11.22c"; locus "ERVLE_Xp11.22c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3670"; repClass "LTR"; repEnd "5385"; repFamily "ERVL"; repLeft "-282"; repStart "5314"; ### ERVLB4_Xp11.22f ### chrX rmsk gene 53869194 53872392 . + . gene_id "ERVLB4_Xp11.22f"; transcript_id "ERVLB4_Xp11.22f"; locus "ERVLB4_Xp11.22f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1796"; model_cov "1597"; model_pct "27.9"; chrX rmsk exon 53869194 53869392 1183 + . gene_id "ERVLB4_Xp11.22f"; transcript_id "ERVLB4_Xp11.22f"; locus "ERVLB4_Xp11.22f"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1796"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "-320"; repStart "1"; chrX rmsk exon 53869393 53869926 3955 + . gene_id "ERVLB4_Xp11.22f"; transcript_id "ERVLB4_Xp11.22f"; locus "ERVLB4_Xp11.22f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1796"; repClass "LTR"; repEnd "1196"; repFamily "ERVL"; repLeft "-4518"; repStart "672"; chrX rmsk exon 53870235 53870359 3955 + . gene_id "ERVLB4_Xp11.22f"; transcript_id "ERVLB4_Xp11.22f"; locus "ERVLB4_Xp11.22f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1796"; repClass "LTR"; repEnd "1319"; repFamily "ERVL"; repLeft "-4395"; repStart "1197"; chrX rmsk exon 53871455 53872392 5470 + . gene_id "ERVLB4_Xp11.22f"; transcript_id "ERVLB4_Xp11.22f"; locus "ERVLB4_Xp11.22f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1796"; repClass "LTR"; repEnd "2257"; repFamily "ERVL"; repLeft "-3457"; repStart "1306"; ### ERVLE_Xp11.22d ### chrX rmsk gene 53899288 53900937 . + . gene_id "ERVLE_Xp11.22d"; transcript_id "ERVLE_Xp11.22d"; locus "ERVLE_Xp11.22d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3673"; model_cov "1781"; model_pct "31.4"; chrX rmsk exon 53899288 53900937 2704 + . gene_id "ERVLE_Xp11.22d"; transcript_id "ERVLE_Xp11.22d"; locus "ERVLE_Xp11.22d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3673"; repClass "LTR"; repEnd "3416"; repFamily "ERVL"; repLeft "-2251"; repStart "1635"; ### MER41_Xp11.22 ### chrX rmsk gene 53923312 53928800 . + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0569"; model_cov "3474"; model_pct "58.4"; chrX rmsk exon 53923312 53923513 4351 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0569"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "370"; chrX rmsk exon 53923621 53923747 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "130"; repFamily "ERV1"; repLeft "-5816"; repStart "3"; chrX rmsk exon 53924028 53924460 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-5321"; repStart "131"; chrX rmsk exon 53924751 53925169 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "1122"; repFamily "ERV1"; repLeft "-4824"; repStart "626"; chrX rmsk exon 53925476 53925531 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "1179"; repFamily "ERV1"; repLeft "-4767"; repStart "1123"; chrX rmsk exon 53925832 53927557 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "2958"; repFamily "ERV1"; repLeft "-2988"; repStart "1180"; chrX rmsk exon 53927860 53928048 15851 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "3143"; repFamily "ERV1"; repLeft "-2803"; repStart "2959"; chrX rmsk exon 53928047 53928377 2539 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0569"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5605"; chrX rmsk exon 53928378 53928800 4522 + . gene_id "MER41_Xp11.22"; transcript_id "MER41_Xp11.22"; locus "MER41_Xp11.22"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0569"; repClass "LTR"; repEnd "432"; repFamily "ERV1"; repLeft "-122"; repStart "1"; ### ERVLE_Xp11.21 ### chrX rmsk gene 54818931 54819968 . - . gene_id "ERVLE_Xp11.21"; transcript_id "ERVLE_Xp11.21"; locus "ERVLE_Xp11.21"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3674"; model_cov "974"; model_pct "17.2"; chrX rmsk exon 54818931 54819071 547 - . gene_id "ERVLE_Xp11.21"; transcript_id "ERVLE_Xp11.21"; locus "ERVLE_Xp11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3674"; repClass "LTR"; repEnd "4117"; repFamily "ERVL"; repLeft "3970"; repStart "-1550"; chrX rmsk exon 54819067 54819143 372 - . gene_id "ERVLE_Xp11.21"; transcript_id "ERVLE_Xp11.21"; locus "ERVLE_Xp11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3674"; repClass "LTR"; repEnd "3954"; repFamily "ERVL"; repLeft "3874"; repStart "-1713"; chrX rmsk exon 54819224 54819968 1902 - . gene_id "ERVLE_Xp11.21"; transcript_id "ERVLE_Xp11.21"; locus "ERVLE_Xp11.21"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3674"; repClass "LTR"; repEnd "3847"; repFamily "ERVL"; repLeft "3100"; repStart "-1820"; ### PABLA_Xp11.21 ### chrX rmsk gene 54848252 54851442 . - . gene_id "PABLA_Xp11.21"; transcript_id "PABLA_Xp11.21"; locus "PABLA_Xp11.21"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0159"; model_cov "4335"; model_pct "86.4"; chrX rmsk exon 54848252 54850628 12317 - . gene_id "PABLA_Xp11.21"; transcript_id "PABLA_Xp11.21"; locus "PABLA_Xp11.21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0159"; repClass "LTR"; repEnd "4764"; repFamily "ERV1"; repLeft "1568"; repStart "-251"; chrX rmsk exon 54850841 54851442 12317 - . gene_id "PABLA_Xp11.21"; transcript_id "PABLA_Xp11.21"; locus "PABLA_Xp11.21"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0159"; repClass "LTR"; repEnd "2498"; repFamily "ERV1"; repLeft "1359"; repStart "-2517"; ### MER41_Xp11.21a ### chrX rmsk gene 54851533 54852760 . - . gene_id "MER41_Xp11.21a"; transcript_id "MER41_Xp11.21a"; locus "MER41_Xp11.21a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0570"; model_cov "1633"; model_pct "27.5"; chrX rmsk exon 54851533 54851711 1022 - . gene_id "MER41_Xp11.21a"; transcript_id "MER41_Xp11.21a"; locus "MER41_Xp11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0570"; repClass "LTR"; repEnd "1092"; repFamily "ERV1"; repLeft "929"; repStart "-4854"; chrX rmsk exon 54851704 54852519 4431 - . gene_id "MER41_Xp11.21a"; transcript_id "MER41_Xp11.21a"; locus "MER41_Xp11.21a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0570"; repClass "LTR"; repEnd "-120"; repFamily "ERV1"; repLeft "-1590"; repStart "-6066"; chrX rmsk exon 54852607 54852760 1076 - . gene_id "MER41_Xp11.21a"; transcript_id "MER41_Xp11.21a"; locus "MER41_Xp11.21a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0570"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "400"; repStart "-1"; ### MER41_Xp11.21b ### chrX rmsk gene 55108769 55111350 . + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0571"; model_cov "2108"; model_pct "35.5"; chrX rmsk exon 55108769 55108922 1149 + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0571"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "401"; chrX rmsk exon 55109008 55109995 5161 + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0571"; repClass "LTR"; repEnd "934"; repFamily "ERV1"; repLeft "-5012"; repStart "-316"; chrX rmsk exon 55109984 55110273 1218 + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0571"; repClass "LTR"; repEnd "1845"; repFamily "ERV1"; repLeft "-4101"; repStart "1598"; chrX rmsk exon 55110271 55110883 4542 + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0571"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5333"; chrX rmsk exon 55110884 55111350 3553 + . gene_id "MER41_Xp11.21b"; transcript_id "MER41_Xp11.21b"; locus "MER41_Xp11.21b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0571"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### MER4_Xp11.21a ### chrX rmsk gene 55148083 55153271 . + . gene_id "MER4_Xp11.21a"; transcript_id "MER4_Xp11.21a"; locus "MER4_Xp11.21a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0826"; model_cov "4905"; model_pct "74.3"; chrX rmsk exon 55148083 55150235 14688 + . gene_id "MER4_Xp11.21a"; transcript_id "MER4_Xp11.21a"; locus "MER4_Xp11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0826"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "-1670"; repStart "1687"; chrX rmsk exon 55150574 55151884 14688 + . gene_id "MER4_Xp11.21a"; transcript_id "MER4_Xp11.21a"; locus "MER4_Xp11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0826"; repClass "LTR"; repEnd "6221"; repFamily "ERV1"; repLeft "-377"; repStart "4929"; chrX rmsk exon 55152191 55152571 14688 + . gene_id "MER4_Xp11.21a"; transcript_id "MER4_Xp11.21a"; locus "MER4_Xp11.21a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0826"; repClass "LTR"; repEnd "6594"; repFamily "ERV1"; repLeft "-4"; repStart "6222"; chrX rmsk exon 55152581 55153271 4553 + . gene_id "MER4_Xp11.21a"; transcript_id "MER4_Xp11.21a"; locus "MER4_Xp11.21a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0826"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_Xp11.21b ### chrX rmsk gene 55193163 55201484 . - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0827"; model_cov "5663"; model_pct "85.8"; chrX rmsk exon 55193163 55195318 15595 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "6594"; repFamily "ERV1"; repLeft "4376"; repStart "-4"; chrX rmsk exon 55195620 55196135 15595 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "4375"; repFamily "ERV1"; repLeft "3837"; repStart "-2223"; chrX rmsk exon 55196129 55196188 335 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "3687"; repFamily "ERV1"; repLeft "3626"; repStart "-2911"; chrX rmsk exon 55196186 55196289 416 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "3538"; repFamily "ERV1"; repLeft "3438"; repStart "-3060"; chrX rmsk exon 55196711 55197363 3003 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "3444"; repFamily "ERV1"; repLeft "2738"; repStart "-3154"; chrX rmsk exon 55197590 55197786 1151 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "2297"; repStart "-4103"; chrX rmsk exon 55197786 55198469 3376 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "2836"; repFamily "ERV1"; repLeft "2180"; repStart "-3762"; chrX rmsk exon 55199928 55201034 4757 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0827"; repClass "LTR"; repEnd "1187"; repFamily "ERV1"; repLeft "1"; repStart "-5411"; chrX rmsk exon 55201037 55201484 3076 - . gene_id "MER4_Xp11.21b"; transcript_id "MER4_Xp11.21b"; locus "MER4_Xp11.21b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0827"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_Xp11.21c ### chrX rmsk gene 55266462 55269093 . + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0572"; model_cov "2324"; model_pct "39.1"; chrX rmsk exon 55266462 55266617 1032 + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0572"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "401"; chrX rmsk exon 55266620 55266692 261 + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0572"; repClass "LTR"; repEnd "-1708"; repFamily "ERV1"; repLeft "-7654"; repStart "-1807"; chrX rmsk exon 55266703 55267443 5518 + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0572"; repClass "LTR"; repEnd "629"; repFamily "ERV1"; repLeft "-5317"; repStart "1"; chrX rmsk exon 55267728 55268792 5518 + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0572"; repClass "LTR"; repEnd "1974"; repFamily "ERV1"; repLeft "-3972"; repStart "630"; chrX rmsk exon 55268810 55269093 1512 + . gene_id "MER41_Xp11.21c"; transcript_id "MER41_Xp11.21c"; locus "MER41_Xp11.21c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0572"; repClass "LTR"; repEnd "1998"; repFamily "ERV1"; repLeft "-3948"; repStart "1745"; ### MER41_Xp11.21d ### chrX rmsk gene 55272930 55276894 . + . gene_id "MER41_Xp11.21d"; transcript_id "MER41_Xp11.21d"; locus "MER41_Xp11.21d"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0573"; model_cov "3138"; model_pct "52.8"; chrX rmsk exon 55272930 55273419 2408 + . gene_id "MER41_Xp11.21d"; transcript_id "MER41_Xp11.21d"; locus "MER41_Xp11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0573"; repClass "LTR"; repEnd "2339"; repFamily "ERV1"; repLeft "-3607"; repStart "1827"; chrX rmsk exon 55273801 55276429 12340 + . gene_id "MER41_Xp11.21d"; transcript_id "MER41_Xp11.21d"; locus "MER41_Xp11.21d"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0573"; repClass "LTR"; repEnd "5493"; repFamily "ERV1"; repLeft "-453"; repStart "2867"; chrX rmsk exon 55276431 55276894 3680 + . gene_id "MER41_Xp11.21d"; transcript_id "MER41_Xp11.21d"; locus "MER41_Xp11.21d"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0573"; repClass "LTR"; repEnd "467"; repFamily "ERV1"; repLeft "-87"; repStart "3"; ### HERVL_Xp11.21a ### chrX rmsk gene 55614743 55619665 . - . gene_id "HERVL_Xp11.21a"; transcript_id "HERVL_Xp11.21a"; locus "HERVL_Xp11.21a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1285"; model_cov "4071"; model_pct "72.0"; chrX rmsk exon 55614743 55615150 2766 - . gene_id "HERVL_Xp11.21a"; transcript_id "HERVL_Xp11.21a"; locus "HERVL_Xp11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1285"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-110"; repStart "-55"; chrX rmsk exon 55615151 55619196 30746 - . gene_id "HERVL_Xp11.21a"; transcript_id "HERVL_Xp11.21a"; locus "HERVL_Xp11.21a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1285"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1583"; repStart "0"; chrX rmsk exon 55619276 55619665 2904 - . gene_id "HERVL_Xp11.21a"; transcript_id "HERVL_Xp11.21a"; locus "HERVL_Xp11.21a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1285"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "2"; repStart "-54"; ### MER41_Xp11.21e ### chrX rmsk gene 55699994 55702122 . - . gene_id "MER41_Xp11.21e"; transcript_id "MER41_Xp11.21e"; locus "MER41_Xp11.21e"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0574"; model_cov "1630"; model_pct "27.4"; chrX rmsk exon 55699994 55700540 3835 - . gene_id "MER41_Xp11.21e"; transcript_id "MER41_Xp11.21e"; locus "MER41_Xp11.21e"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0574"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 55700541 55702122 9910 - . gene_id "MER41_Xp11.21e"; transcript_id "MER41_Xp11.21e"; locus "MER41_Xp11.21e"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0574"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4314"; repStart "-2"; ### MER41_Xp11.21f ### chrX rmsk gene 55708606 55712410 . - . gene_id "MER41_Xp11.21f"; transcript_id "MER41_Xp11.21f"; locus "MER41_Xp11.21f"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0575"; model_cov "4919"; model_pct "82.7"; chrX rmsk exon 55708606 55708869 7491 - . gene_id "MER41_Xp11.21f"; transcript_id "MER41_Xp11.21f"; locus "MER41_Xp11.21f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0575"; repClass "LTR"; repEnd "3051"; repFamily "ERV1"; repLeft "3013"; repStart "-2895"; chrX rmsk exon 55709202 55711843 7491 - . gene_id "MER41_Xp11.21f"; transcript_id "MER41_Xp11.21f"; locus "MER41_Xp11.21f"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0575"; repClass "LTR"; repEnd "3012"; repFamily "ERV1"; repLeft "-1869"; repStart "-2934"; chrX rmsk exon 55711920 55712410 3449 - . gene_id "MER41_Xp11.21f"; transcript_id "MER41_Xp11.21f"; locus "MER41_Xp11.21f"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0575"; repClass "LTR"; repEnd "499"; repFamily "ERV1"; repLeft "1"; repStart "-55"; ### ERVLB4_Xp11.21a ### chrX rmsk gene 55741699 55747805 . - . gene_id "ERVLB4_Xp11.21a"; transcript_id "ERVLB4_Xp11.21a"; locus "ERVLB4_Xp11.21a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1798"; model_cov "5673"; model_pct "99.3"; chrX rmsk exon 55741699 55741890 1052 - . gene_id "ERVLB4_Xp11.21a"; transcript_id "ERVLB4_Xp11.21a"; locus "ERVLB4_Xp11.21a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1798"; repClass "LTR"; repEnd "195"; repFamily "ERVL"; repLeft "1"; repStart "-219"; chrX rmsk exon 55741896 55744106 27673 - . gene_id "ERVLB4_Xp11.21a"; transcript_id "ERVLB4_Xp11.21a"; locus "ERVLB4_Xp11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1798"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "3556"; repStart "-5"; chrX rmsk exon 55744405 55747805 27673 - . gene_id "ERVLB4_Xp11.21a"; transcript_id "ERVLB4_Xp11.21a"; locus "ERVLB4_Xp11.21a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1798"; repClass "LTR"; repEnd "3555"; repFamily "ERVL"; repLeft "35"; repStart "-2159"; ### HERVH_Xp11.21 ### chrX rmsk gene 55788407 55793405 . - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1238"; model_cov "4739"; model_pct "61.4"; chrX rmsk exon 55788407 55788748 1651 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "418"; repFamily "ERV1"; repLeft "-7"; repStart "-46"; chrX rmsk exon 55788749 55789306 3555 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrX rmsk exon 55789300 55789560 1548 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5756"; repStart "-1697"; chrX rmsk exon 55789551 55790822 3831 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "5788"; repFamily "ERV1"; repLeft "4416"; repStart "-1925"; chrX rmsk exon 55790823 55792839 12041 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "800"; repStart "-4883"; chrX rmsk exon 55792810 55793298 994 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "1"; repStart "-7191"; chrX rmsk exon 55793299 55793405 886 - . gene_id "HERVH_Xp11.21"; transcript_id "HERVH_Xp11.21"; locus "HERVH_Xp11.21"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1238"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "358"; repStart "0"; ### HERVEA_Xp11.21 ### chrX rmsk gene 56024460 56032219 . - . gene_id "HERVEA_Xp11.21"; transcript_id "HERVEA_Xp11.21"; locus "HERVEA_Xp11.21"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0104"; model_cov "6825"; model_pct "87.0"; chrX rmsk exon 56024460 56024935 2841 - . gene_id "HERVEA_Xp11.21"; transcript_id "HERVEA_Xp11.21"; locus "HERVEA_Xp11.21"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0104"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 56024954 56031717 44509 - . gene_id "HERVEA_Xp11.21"; transcript_id "HERVEA_Xp11.21"; locus "HERVEA_Xp11.21"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0104"; repClass "LTR"; repEnd "6826"; repFamily "ERV1"; repLeft "1"; repStart "-1021"; chrX rmsk exon 56031718 56032219 3002 - . gene_id "HERVEA_Xp11.21"; transcript_id "HERVEA_Xp11.21"; locus "HERVEA_Xp11.21"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0104"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Xp11.21a ### chrX rmsk gene 56376339 56382857 . - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0492"; model_cov "4843"; model_pct "71.7"; chrX rmsk exon 56376339 56376468 943 - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0492"; repClass "LTR"; repEnd "131"; repFamily "ERV1"; repLeft "1"; repStart "-635"; chrX rmsk exon 56376469 56377623 6894 - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0492"; repClass "LTR"; repEnd "5500"; repFamily "ERV1"; repLeft "4321"; repStart "-1258"; chrX rmsk exon 56377628 56378360 4522 - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0492"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "3430"; repStart "-2572"; chrX rmsk exon 56378363 56379458 5714 - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0492"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "1968"; repStart "-3670"; chrX rmsk exon 56381213 56382857 5420 - . gene_id "MER4B_Xp11.21a"; transcript_id "MER4B_Xp11.21a"; locus "MER4B_Xp11.21a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0492"; repClass "LTR"; repEnd "1986"; repFamily "ERV1"; repLeft "198"; repStart "-4772"; ### LTR25_Xp11.21 ### chrX rmsk gene 56386562 56388483 . - . gene_id "LTR25_Xp11.21"; transcript_id "LTR25_Xp11.21"; locus "LTR25_Xp11.21"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0142"; model_cov "2589"; model_pct "36.0"; chrX rmsk exon 56386562 56388483 7273 - . gene_id "LTR25_Xp11.21"; transcript_id "LTR25_Xp11.21"; locus "LTR25_Xp11.21"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0142"; repClass "LTR"; repEnd "6258"; repFamily "ERV1"; repLeft "3669"; repStart "-930"; ### HERVL_Xp11.21b ### chrX rmsk gene 56668325 56673692 . - . gene_id "HERVL_Xp11.21b"; transcript_id "HERVL_Xp11.21b"; locus "HERVL_Xp11.21b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1286"; model_cov "4697"; model_pct "83.1"; chrX rmsk exon 56668325 56668872 1816 - . gene_id "HERVL_Xp11.21b"; transcript_id "HERVL_Xp11.21b"; locus "HERVL_Xp11.21b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1286"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-100"; repStart "-1"; chrX rmsk exon 56668873 56671787 27708 - . gene_id "HERVL_Xp11.21b"; transcript_id "HERVL_Xp11.21b"; locus "HERVL_Xp11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1286"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2744"; repStart "0"; chrX rmsk exon 56672077 56673692 27708 - . gene_id "HERVL_Xp11.21b"; transcript_id "HERVL_Xp11.21b"; locus "HERVL_Xp11.21b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1286"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "956"; repStart "-2911"; ### HERVL_Xp11.21c ### chrX rmsk gene 56679851 56681298 . - . gene_id "HERVL_Xp11.21c"; transcript_id "HERVL_Xp11.21c"; locus "HERVL_Xp11.21c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1287"; model_cov "966"; model_pct "17.1"; chrX rmsk exon 56679851 56680750 3475 - . gene_id "HERVL_Xp11.21c"; transcript_id "HERVL_Xp11.21c"; locus "HERVL_Xp11.21c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1287"; repClass "LTR"; repEnd "967"; repFamily "ERVL"; repLeft "1"; repStart "-4687"; chrX rmsk exon 56680751 56681298 1833 - . gene_id "HERVL_Xp11.21c"; transcript_id "HERVL_Xp11.21c"; locus "HERVL_Xp11.21c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1287"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### ERVL_Xp11.21a ### chrX rmsk gene 56824111 56826878 . - . gene_id "ERVL_Xp11.21a"; transcript_id "ERVL_Xp11.21a"; locus "ERVL_Xp11.21a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0475"; model_cov "2183"; model_pct "37.9"; chrX rmsk exon 56824111 56824203 462 - . gene_id "ERVL_Xp11.21a"; transcript_id "ERVL_Xp11.21a"; locus "ERVL_Xp11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0475"; repClass "LTR"; repEnd "5627"; repFamily "ERVL"; repLeft "5537"; repStart "-130"; chrX rmsk exon 56824768 56825271 2677 - . gene_id "ERVL_Xp11.21a"; transcript_id "ERVL_Xp11.21a"; locus "ERVL_Xp11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0475"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "5043"; repStart "-231"; chrX rmsk exon 56825272 56826245 5582 - . gene_id "ERVL_Xp11.21a"; transcript_id "ERVL_Xp11.21a"; locus "ERVL_Xp11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0475"; repClass "LTR"; repEnd "3018"; repFamily "ERVL"; repLeft "2040"; repStart "-2739"; chrX rmsk exon 56826243 56826878 3268 - . gene_id "ERVL_Xp11.21a"; transcript_id "ERVL_Xp11.21a"; locus "ERVL_Xp11.21a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0475"; repClass "LTR"; repEnd "1836"; repFamily "ERVL"; repLeft "1204"; repStart "-3921"; ### ERVL_Xp11.21b ### chrX rmsk gene 56833150 56834826 . - . gene_id "ERVL_Xp11.21b"; transcript_id "ERVL_Xp11.21b"; locus "ERVL_Xp11.21b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0476"; model_cov "1165"; model_pct "20.2"; chrX rmsk exon 56833150 56834320 4602 - . gene_id "ERVL_Xp11.21b"; transcript_id "ERVL_Xp11.21b"; locus "ERVL_Xp11.21b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0476"; repClass "LTR"; repEnd "1209"; repFamily "ERVL"; repLeft "44"; repStart "-4548"; chrX rmsk exon 56834321 56834826 2027 - . gene_id "ERVL_Xp11.21b"; transcript_id "ERVL_Xp11.21b"; locus "ERVL_Xp11.21b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0476"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL32_Xp11.21 ### chrX rmsk gene 56862633 56868798 . + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; category "prototype"; intModel "HERVL32-int"; locid "HERVL32-int_0055"; model_cov "2728"; model_pct "79.8"; chrX rmsk exon 56862633 56863074 2149 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-13"; repStart "1"; chrX rmsk exon 56863075 56864855 5912 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "1456"; repFamily "ERVL"; repLeft "-1962"; repStart "-390"; chrX rmsk exon 56865162 56865531 733 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "1818"; repFamily "ERVL"; repLeft "-1600"; repStart "1457"; chrX rmsk exon 56865850 56866175 306 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "2484"; repFamily "ERVL"; repLeft "-934"; repStart "2159"; chrX rmsk exon 56868510 56868724 522 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "3411"; repFamily "ERVL"; repLeft "-7"; repStart "3215"; chrX rmsk exon 56868737 56868798 258 + . gene_id "HERVL32_Xp11.21"; transcript_id "HERVL32_Xp11.21"; locus "HERVL32_Xp11.21"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0055"; repClass "LTR"; repEnd "57"; repFamily "ERVL"; repLeft "-400"; repStart "1"; ### PRIMA41_Xp11.21 ### chrX rmsk gene 56867725 56868591 . + . gene_id "PRIMA41_Xp11.21"; transcript_id "PRIMA41_Xp11.21"; locus "PRIMA41_Xp11.21"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0169"; model_cov "868"; model_pct "11.2"; chrX rmsk exon 56867725 56868591 1224 + . gene_id "PRIMA41_Xp11.21"; transcript_id "PRIMA41_Xp11.21"; locus "PRIMA41_Xp11.21"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0169"; repClass "LTR"; repEnd "7451"; repFamily "ERV1"; repLeft "-305"; repStart "6583"; ### MER41_Xp11.21g ### chrX rmsk gene 56886902 56890320 . + . gene_id "MER41_Xp11.21g"; transcript_id "MER41_Xp11.21g"; locus "MER41_Xp11.21g"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0576"; model_cov "1508"; model_pct "25.4"; chrX rmsk exon 56886902 56887452 3875 + . gene_id "MER41_Xp11.21g"; transcript_id "MER41_Xp11.21g"; locus "MER41_Xp11.21g"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0576"; repClass "LTR"; repEnd "551"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chrX rmsk exon 56887542 56888129 3256 + . gene_id "MER41_Xp11.21g"; transcript_id "MER41_Xp11.21g"; locus "MER41_Xp11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0576"; repClass "LTR"; repEnd "633"; repFamily "ERV1"; repLeft "-5313"; repStart "1"; chrX rmsk exon 56888118 56888544 1879 + . gene_id "MER41_Xp11.21g"; transcript_id "MER41_Xp11.21g"; locus "MER41_Xp11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0576"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "-4507"; repStart "1081"; chrX rmsk exon 56889824 56890320 2134 + . gene_id "MER41_Xp11.21g"; transcript_id "MER41_Xp11.21g"; locus "MER41_Xp11.21g"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0576"; repClass "LTR"; repEnd "2254"; repFamily "ERV1"; repLeft "-3692"; repStart "1736"; ### MER41_Xp11.21h ### chrX rmsk gene 56902875 56906579 . + . gene_id "MER41_Xp11.21h"; transcript_id "MER41_Xp11.21h"; locus "MER41_Xp11.21h"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0577"; model_cov "3384"; model_pct "56.9"; chrX rmsk exon 56902875 56904041 11069 + . gene_id "MER41_Xp11.21h"; transcript_id "MER41_Xp11.21h"; locus "MER41_Xp11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0577"; repClass "LTR"; repEnd "4535"; repFamily "ERV1"; repLeft "-1411"; repStart "2555"; chrX rmsk exon 56904403 56905123 11069 + . gene_id "MER41_Xp11.21h"; transcript_id "MER41_Xp11.21h"; locus "MER41_Xp11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0577"; repClass "LTR"; repEnd "5273"; repFamily "ERV1"; repLeft "-673"; repStart "4536"; chrX rmsk exon 56905457 56906124 11069 + . gene_id "MER41_Xp11.21h"; transcript_id "MER41_Xp11.21h"; locus "MER41_Xp11.21h"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0577"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "-5"; repStart "5274"; chrX rmsk exon 56906128 56906579 2756 + . gene_id "MER41_Xp11.21h"; transcript_id "MER41_Xp11.21h"; locus "MER41_Xp11.21h"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0577"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "-101"; repStart "2"; ### HERVK11_Xp11.21 ### chrX rmsk gene 56942422 56948730 . + . gene_id "HERVK11_Xp11.21"; transcript_id "HERVK11_Xp11.21"; locus "HERVK11_Xp11.21"; category "internal"; intModel "HERVK11-int"; locid "HERVK11-int_0110"; model_cov "6366"; model_pct "80.0"; chrX rmsk exon 56942422 56948173 40599 + . gene_id "HERVK11_Xp11.21"; transcript_id "HERVK11_Xp11.21"; locus "HERVK11_Xp11.21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0110"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "970"; chrX rmsk exon 56948162 56948730 4493 + . gene_id "HERVK11_Xp11.21"; transcript_id "HERVK11_Xp11.21"; locus "HERVK11_Xp11.21"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0110"; repClass "LTR"; repEnd "7526"; repFamily "ERVK"; repLeft "-427"; repStart "6955"; ### HERVL_Xp11.21d ### chrX rmsk gene 57041670 57046193 . - . gene_id "HERVL_Xp11.21d"; transcript_id "HERVL_Xp11.21d"; locus "HERVL_Xp11.21d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1288"; model_cov "4054"; model_pct "71.7"; chrX rmsk exon 57041670 57042207 1918 - . gene_id "HERVL_Xp11.21d"; transcript_id "HERVL_Xp11.21d"; locus "HERVL_Xp11.21d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1288"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chrX rmsk exon 57042208 57044736 18593 - . gene_id "HERVL_Xp11.21d"; transcript_id "HERVL_Xp11.21d"; locus "HERVL_Xp11.21d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1288"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3064"; repStart "0"; chrX rmsk exon 57044736 57046193 10391 - . gene_id "HERVL_Xp11.21d"; transcript_id "HERVL_Xp11.21d"; locus "HERVL_Xp11.21d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1288"; repClass "LTR"; repEnd "2526"; repFamily "ERVL"; repLeft "1062"; repStart "-3128"; ### HERVL40_Xp11.21a ### chrX rmsk gene 57062530 57064463 . - . gene_id "HERVL40_Xp11.21a"; transcript_id "HERVL40_Xp11.21a"; locus "HERVL40_Xp11.21a"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0469"; model_cov "1423"; model_pct "25.7"; chrX rmsk exon 57062530 57063309 2179 - . gene_id "HERVL40_Xp11.21a"; transcript_id "HERVL40_Xp11.21a"; locus "HERVL40_Xp11.21a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0469"; repClass "LTR"; repEnd "2552"; repFamily "ERVL"; repLeft "1722"; repStart "-2978"; chrX rmsk exon 57063340 57063720 1227 - . gene_id "HERVL40_Xp11.21a"; transcript_id "HERVL40_Xp11.21a"; locus "HERVL40_Xp11.21a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0469"; repClass "LTR"; repEnd "1654"; repFamily "ERVL"; repLeft "1252"; repStart "-3876"; chrX rmsk exon 57063750 57063930 407 - . gene_id "HERVL40_Xp11.21a"; transcript_id "HERVL40_Xp11.21a"; locus "HERVL40_Xp11.21a"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0469"; repClass "LTR"; repEnd "211"; repFamily "ERVL"; repLeft "20"; repStart "-5319"; chrX rmsk exon 57063951 57064463 1209 - . gene_id "HERVL40_Xp11.21a"; transcript_id "HERVL40_Xp11.21a"; locus "HERVL40_Xp11.21a"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0469"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "44"; repStart "-4"; ### HML6_Xp11.21 ### chrX rmsk gene 57102981 57109396 . + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0100"; model_cov "5632"; model_pct "78.2"; chrX rmsk exon 57102981 57103438 2717 + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0100"; repClass "LTR"; repEnd "452"; repFamily "ERVK"; repLeft "-32"; repStart "1"; chrX rmsk exon 57103441 57106236 17345 + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0100"; repClass "LTR"; repEnd "2869"; repFamily "ERVK"; repLeft "-4333"; repStart "10"; chrX rmsk exon 57106224 57106411 1339 + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0100"; repClass "LTR"; repEnd "4265"; repFamily "ERVK"; repLeft "-2937"; repStart "4078"; chrX rmsk exon 57106403 57108950 16549 + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0100"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "4616"; chrX rmsk exon 57108951 57109396 2589 + . gene_id "HML6_Xp11.21"; transcript_id "HML6_Xp11.21"; locus "HML6_Xp11.21"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0100"; repClass "LTR"; repEnd "444"; repFamily "ERVK"; repLeft "-40"; repStart "1"; ### HERVL40_Xp11.21b ### chrX rmsk gene 57113263 57116750 . - . gene_id "HERVL40_Xp11.21b"; transcript_id "HERVL40_Xp11.21b"; locus "HERVL40_Xp11.21b"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0470"; model_cov "3117"; model_pct "56.4"; chrX rmsk exon 57113263 57114490 11960 - . gene_id "HERVL40_Xp11.21b"; transcript_id "HERVL40_Xp11.21b"; locus "HERVL40_Xp11.21b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0470"; repClass "LTR"; repEnd "3937"; repFamily "ERVL"; repLeft "2710"; repStart "-1593"; chrX rmsk exon 57114867 57116567 11960 - . gene_id "HERVL40_Xp11.21b"; transcript_id "HERVL40_Xp11.21b"; locus "HERVL40_Xp11.21b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0470"; repClass "LTR"; repEnd "2709"; repFamily "ERVL"; repLeft "1016"; repStart "-2821"; chrX rmsk exon 57116568 57116750 629 - . gene_id "HERVL40_Xp11.21b"; transcript_id "HERVL40_Xp11.21b"; locus "HERVL40_Xp11.21b"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0470"; repClass "LTR"; repEnd "803"; repFamily "ERVL"; repLeft "606"; repStart "-4727"; ### HML3_Xp11.21 ### chrX rmsk gene 57203018 57209051 . - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0238"; model_cov "5022"; model_pct "83.4"; chrX rmsk exon 57203018 57203527 3955 - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0238"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 57203541 57204491 7421 - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0238"; repClass "LTR"; repEnd "6006"; repFamily "ERVK"; repLeft "5053"; repStart "-15"; chrX rmsk exon 57204486 57207971 27911 - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0238"; repClass "LTR"; repEnd "4926"; repFamily "ERVK"; repLeft "1436"; repStart "-1095"; chrX rmsk exon 57207970 57208543 4444 - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0238"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chrX rmsk exon 57208544 57209051 3845 - . gene_id "HML3_Xp11.21"; transcript_id "HML3_Xp11.21"; locus "HML3_Xp11.21"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0238"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH48_Xp11.21 ### chrX rmsk gene 57218928 57224864 . + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0053"; model_cov "5535"; model_pct "83.2"; chrX rmsk exon 57218928 57219326 2651 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 57219328 57219863 7390 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "532"; repFamily "ERV1"; repLeft "-6122"; repStart "1"; chrX rmsk exon 57219889 57220453 7390 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "1190"; repFamily "ERV1"; repLeft "-5464"; repStart "533"; chrX rmsk exon 57220438 57224273 16102 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "5666"; repFamily "ERV1"; repLeft "-988"; repStart "1501"; chrX rmsk exon 57224262 57224444 1328 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "0"; repStart "6472"; chrX rmsk exon 57224445 57224864 2970 + . gene_id "HERVH48_Xp11.21"; transcript_id "HERVH48_Xp11.21"; locus "HERVH48_Xp11.21"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0053"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVW_Xp11.21 ### chrX rmsk gene 57398559 57405610 . - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0307"; model_cov "5772"; model_pct "66.9"; chrX rmsk exon 57398559 57398884 2514 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chrX rmsk exon 57398891 57399191 2291 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "8335"; repStart "-5"; chrX rmsk exon 57399226 57400840 29509 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "4414"; repStart "-2607"; chrX rmsk exon 57401143 57403145 29509 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "4413"; repFamily "ERV1"; repLeft "2430"; repStart "-4213"; chrX rmsk exon 57403131 57404338 9150 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "798"; repStart "-6612"; chrX rmsk exon 57404504 57405198 5383 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "684"; repFamily "ERV1"; repLeft "2"; repStart "-7942"; chrX rmsk exon 57405199 57405610 2940 - . gene_id "HERVW_Xp11.21"; transcript_id "HERVW_Xp11.21"; locus "HERVW_Xp11.21"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0307"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "347"; repStart "0"; ### ERVLB4_Xp11.21b ### chrX rmsk gene 57421737 57422585 . - . gene_id "ERVLB4_Xp11.21b"; transcript_id "ERVLB4_Xp11.21b"; locus "ERVLB4_Xp11.21b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1799"; model_cov "949"; model_pct "16.6"; chrX rmsk exon 57421737 57421868 459 - . gene_id "ERVLB4_Xp11.21b"; transcript_id "ERVLB4_Xp11.21b"; locus "ERVLB4_Xp11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1799"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "4358"; repStart "-1158"; chrX rmsk exon 57421845 57422585 3947 - . gene_id "ERVLB4_Xp11.21b"; transcript_id "ERVLB4_Xp11.21b"; locus "ERVLB4_Xp11.21b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1799"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "2042"; repStart "-2921"; ### ERVLB4_Xp11.21c ### chrX rmsk gene 57430203 57431312 . - . gene_id "ERVLB4_Xp11.21c"; transcript_id "ERVLB4_Xp11.21c"; locus "ERVLB4_Xp11.21c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1800"; model_cov "1254"; model_pct "21.9"; chrX rmsk exon 57430203 57431312 4263 - . gene_id "ERVLB4_Xp11.21c"; transcript_id "ERVLB4_Xp11.21c"; locus "ERVLB4_Xp11.21c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1800"; repClass "LTR"; repEnd "2043"; repFamily "ERVL"; repLeft "789"; repStart "-3671"; ### MER41_Xp11.21i ### chrX rmsk gene 57508333 57510909 . + . gene_id "MER41_Xp11.21i"; transcript_id "MER41_Xp11.21i"; locus "MER41_Xp11.21i"; category "internal"; intModel "MER41-int"; locid "MER41-int_0578"; model_cov "1851"; model_pct "31.1"; chrX rmsk exon 57508333 57508474 599 + . gene_id "MER41_Xp11.21i"; transcript_id "MER41_Xp11.21i"; locus "MER41_Xp11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0578"; repClass "LTR"; repEnd "1709"; repFamily "ERV1"; repLeft "-4237"; repStart "1579"; chrX rmsk exon 57508543 57509121 6089 + . gene_id "MER41_Xp11.21i"; transcript_id "MER41_Xp11.21i"; locus "MER41_Xp11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0578"; repClass "LTR"; repEnd "3293"; repFamily "ERV1"; repLeft "-2653"; repStart "2735"; chrX rmsk exon 57509669 57510909 6089 + . gene_id "MER41_Xp11.21i"; transcript_id "MER41_Xp11.21i"; locus "MER41_Xp11.21i"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0578"; repClass "LTR"; repEnd "4457"; repFamily "ERV1"; repLeft "-1489"; repStart "3294"; ### MER41_Xp11.21j ### chrX rmsk gene 57517660 57519175 . + . gene_id "MER41_Xp11.21j"; transcript_id "MER41_Xp11.21j"; locus "MER41_Xp11.21j"; category "internal"; intModel "MER41-int"; locid "MER41-int_0579"; model_cov "1644"; model_pct "27.6"; chrX rmsk exon 57517660 57519175 5974 + . gene_id "MER41_Xp11.21j"; transcript_id "MER41_Xp11.21j"; locus "MER41_Xp11.21j"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0579"; repClass "LTR"; repEnd "5884"; repFamily "ERV1"; repLeft "-62"; repStart "4240"; ### LTR23_Xp11.21 ### chrX rmsk gene 57646636 57650025 . - . gene_id "LTR23_Xp11.21"; transcript_id "LTR23_Xp11.21"; locus "LTR23_Xp11.21"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0074"; model_cov "2440"; model_pct "47.6"; chrX rmsk exon 57646636 57647771 2865 - . gene_id "LTR23_Xp11.21"; transcript_id "LTR23_Xp11.21"; locus "LTR23_Xp11.21"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0074"; repClass "LTR"; repEnd "1383"; repFamily "ERV1"; repLeft "-457"; repStart "-3740"; chrX rmsk exon 57648703 57649060 1484 - . gene_id "LTR23_Xp11.21"; transcript_id "LTR23_Xp11.21"; locus "LTR23_Xp11.21"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0074"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "712"; repStart "-4071"; chrX rmsk exon 57649750 57649790 1484 - . gene_id "LTR23_Xp11.21"; transcript_id "LTR23_Xp11.21"; locus "LTR23_Xp11.21"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0074"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "672"; repStart "-4412"; chrX rmsk exon 57649787 57650025 905 - . gene_id "LTR23_Xp11.21"; transcript_id "LTR23_Xp11.21"; locus "LTR23_Xp11.21"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0074"; repClass "LTR"; repEnd "451"; repFamily "ERV1"; repLeft "230"; repStart "-4672"; ### MER61_Xp11.21 ### chrX rmsk gene 57650579 57656546 . + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0387"; model_cov "4870"; model_pct "93.3"; chrX rmsk exon 57650579 57651001 2534 + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0387"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 57651002 57652629 4631 + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0387"; repClass "LTR"; repEnd "1640"; repFamily "ERV1"; repLeft "-3577"; repStart "2"; chrX rmsk exon 57652620 57653371 19598 + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0387"; repClass "LTR"; repEnd "2749"; repFamily "ERV1"; repLeft "-2468"; repStart "1983"; chrX rmsk exon 57653683 57656120 19598 + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0387"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "2750"; chrX rmsk exon 57656121 57656546 2494 + . gene_id "MER61_Xp11.21"; transcript_id "MER61_Xp11.21"; locus "MER61_Xp11.21"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0387"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA4_Xp11.21 ### chrX rmsk gene 57656547 57662326 . - . gene_id "PRIMA4_Xp11.21"; transcript_id "PRIMA4_Xp11.21"; locus "PRIMA4_Xp11.21"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0239"; model_cov "5873"; model_pct "71.0"; chrX rmsk exon 57656547 57658721 13236 - . gene_id "PRIMA4_Xp11.21"; transcript_id "PRIMA4_Xp11.21"; locus "PRIMA4_Xp11.21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0239"; repClass "LTR"; repEnd "7371"; repFamily "ERV1"; repLeft "5217"; repStart "-899"; chrX rmsk exon 57658721 57659668 5681 - . gene_id "PRIMA4_Xp11.21"; transcript_id "PRIMA4_Xp11.21"; locus "PRIMA4_Xp11.21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0239"; repClass "LTR"; repEnd "5360"; repFamily "ERV1"; repLeft "4422"; repStart "-2910"; chrX rmsk exon 57659657 57662326 13905 - . gene_id "PRIMA4_Xp11.21"; transcript_id "PRIMA4_Xp11.21"; locus "PRIMA4_Xp11.21"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0239"; repClass "LTR"; repEnd "4154"; repFamily "ERV1"; repLeft "1373"; repStart "-4116"; ### MER41_Xp11.21k ### chrX rmsk gene 57667922 57670179 . - . gene_id "MER41_Xp11.21k"; transcript_id "MER41_Xp11.21k"; locus "MER41_Xp11.21k"; category "internal"; intModel "MER41-int"; locid "MER41-int_0580"; model_cov "2350"; model_pct "39.5"; chrX rmsk exon 57667922 57668426 2805 - . gene_id "MER41_Xp11.21k"; transcript_id "MER41_Xp11.21k"; locus "MER41_Xp11.21k"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0580"; repClass "LTR"; repEnd "4210"; repFamily "ERV1"; repLeft "3692"; repStart "-1736"; chrX rmsk exon 57668425 57668877 2483 - . gene_id "MER41_Xp11.21k"; transcript_id "MER41_Xp11.21k"; locus "MER41_Xp11.21k"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0580"; repClass "LTR"; repEnd "3293"; repFamily "ERV1"; repLeft "2852"; repStart "-2653"; chrX rmsk exon 57668859 57670179 7343 - . gene_id "MER41_Xp11.21k"; transcript_id "MER41_Xp11.21k"; locus "MER41_Xp11.21k"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0580"; repClass "LTR"; repEnd "3257"; repFamily "ERV1"; repLeft "1866"; repStart "-2689"; ### MER4B_Xp11.21b ### chrX rmsk gene 57779656 57783648 . - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0493"; model_cov "3203"; model_pct "47.4"; chrX rmsk exon 57779656 57780254 2423 - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0493"; repClass "LTR"; repEnd "757"; repFamily "ERV1"; repLeft "1"; repStart "-9"; chrX rmsk exon 57780255 57782323 12469 - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0493"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "4616"; repStart "0"; chrX rmsk exon 57782325 57782673 1935 - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0493"; repClass "LTR"; repEnd "3776"; repFamily "ERV1"; repLeft "3424"; repStart "-2982"; chrX rmsk exon 57782646 57783049 3128 - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0493"; repClass "LTR"; repEnd "3109"; repFamily "ERV1"; repLeft "2727"; repStart "-3649"; chrX rmsk exon 57783339 57783648 3128 - . gene_id "MER4B_Xp11.21b"; transcript_id "MER4B_Xp11.21b"; locus "MER4B_Xp11.21b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0493"; repClass "LTR"; repEnd "2726"; repFamily "ERV1"; repLeft "2399"; repStart "-4032"; ### HUERSP3_Xp11.21 ### chrX rmsk gene 57816574 57823244 . - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0221"; model_cov "4904"; model_pct "55.0"; chrX rmsk exon 57816574 57817154 2700 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "614"; repFamily "ERV1"; repLeft "-21"; repStart "-30"; chrX rmsk exon 57817157 57817415 1166 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "8915"; repFamily "ERV1"; repLeft "8708"; repStart "-4"; chrX rmsk exon 57817885 57817994 512 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "6874"; repStart "-1937"; chrX rmsk exon 57818006 57818748 4011 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chrX rmsk exon 57818734 57819339 4180 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "4970"; repStart "-3342"; chrX rmsk exon 57819381 57819523 701 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chrX rmsk exon 57819517 57821947 9714 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "743"; repStart "-5635"; chrX rmsk exon 57821968 57822413 1741 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "2060"; repFamily "ERV1"; repLeft "1621"; repStart "-6859"; chrX rmsk exon 57822540 57822643 487 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "110"; repFamily "ERV1"; repLeft "1"; repStart "-8809"; chrX rmsk exon 57822644 57823244 2870 - . gene_id "HUERSP3_Xp11.21"; transcript_id "HUERSP3_Xp11.21"; locus "HUERSP3_Xp11.21"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0221"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "7"; repStart "0"; ### HML5_Xp11.21 ### chrX rmsk gene 57876224 57878788 . + . gene_id "HML5_Xp11.21"; transcript_id "HML5_Xp11.21"; locus "HML5_Xp11.21"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0130"; model_cov "1582"; model_pct "23.1"; chrX rmsk exon 57876224 57876670 3049 + . gene_id "HML5_Xp11.21"; transcript_id "HML5_Xp11.21"; locus "HML5_Xp11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0130"; repClass "LTR"; repEnd "5317"; repFamily "ERVK"; repLeft "-1520"; repStart "4869"; chrX rmsk exon 57877162 57877318 1132 + . gene_id "HML5_Xp11.21"; transcript_id "HML5_Xp11.21"; locus "HML5_Xp11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0130"; repClass "LTR"; repEnd "5470"; repFamily "ERVK"; repLeft "-1367"; repStart "5314"; chrX rmsk exon 57877318 57878295 6371 + . gene_id "HML5_Xp11.21"; transcript_id "HML5_Xp11.21"; locus "HML5_Xp11.21"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0130"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5859"; chrX rmsk exon 57878300 57878788 2539 + . gene_id "HML5_Xp11.21"; transcript_id "HML5_Xp11.21"; locus "HML5_Xp11.21"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0130"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "5"; ### HERVL40_Xp11.21c ### chrX rmsk gene 57929860 57931899 . + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0474"; model_cov "1311"; model_pct "23.7"; chrX rmsk exon 57929860 57929968 630 + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; repName "LTR40b"; geneRegion "ltr"; locid "HERVL40-int_0474"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "354"; chrX rmsk exon 57930247 57930656 606 + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0474"; repClass "LTR"; repEnd "1387"; repFamily "ERVL"; repLeft "-4143"; repStart "963"; chrX rmsk exon 57931000 57931212 404 + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0474"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1407"; chrX rmsk exon 57931212 57931553 1052 + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0474"; repClass "LTR"; repEnd "2386"; repFamily "ERVL"; repLeft "-3144"; repStart "2050"; chrX rmsk exon 57931563 57931899 1250 + . gene_id "HERVL40_Xp11.21c"; transcript_id "HERVL40_Xp11.21c"; locus "HERVL40_Xp11.21c"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0474"; repClass "LTR"; repEnd "2903"; repFamily "ERVL"; repLeft "-2627"; repStart "2562"; ### HERVL40_Xp11.21d ### chrX rmsk gene 57934839 57936027 . + . gene_id "HERVL40_Xp11.21d"; transcript_id "HERVL40_Xp11.21d"; locus "HERVL40_Xp11.21d"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0475"; model_cov "1321"; model_pct "23.9"; chrX rmsk exon 57934839 57935101 1016 + . gene_id "HERVL40_Xp11.21d"; transcript_id "HERVL40_Xp11.21d"; locus "HERVL40_Xp11.21d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0475"; repClass "LTR"; repEnd "3161"; repFamily "ERVL"; repLeft "-2369"; repStart "2898"; chrX rmsk exon 57935114 57936027 2299 + . gene_id "HERVL40_Xp11.21d"; transcript_id "HERVL40_Xp11.21d"; locus "HERVL40_Xp11.21d"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0475"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "-1240"; repStart "3232"; ### MER41_Xp11.21l ### chrX rmsk gene 57963280 57966092 . - . gene_id "MER41_Xp11.21l"; transcript_id "MER41_Xp11.21l"; locus "MER41_Xp11.21l"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0581"; model_cov "2272"; model_pct "38.2"; chrX rmsk exon 57963280 57963797 3369 - . gene_id "MER41_Xp11.21l"; transcript_id "MER41_Xp11.21l"; locus "MER41_Xp11.21l"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0581"; repClass "LTR"; repEnd "548"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chrX rmsk exon 57963798 57965298 4852 - . gene_id "MER41_Xp11.21l"; transcript_id "MER41_Xp11.21l"; locus "MER41_Xp11.21l"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0581"; repClass "LTR"; repEnd "5477"; repFamily "ERV1"; repLeft "3839"; repStart "-469"; chrX rmsk exon 57965311 57965924 3708 - . gene_id "MER41_Xp11.21l"; transcript_id "MER41_Xp11.21l"; locus "MER41_Xp11.21l"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0581"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "1"; repStart "-5311"; chrX rmsk exon 57965925 57966092 901 - . gene_id "MER41_Xp11.21l"; transcript_id "MER41_Xp11.21l"; locus "MER41_Xp11.21l"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0581"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "314"; repStart "0"; ### HUERSP1_Xp11.21 ### chrX rmsk gene 57973880 57975514 . - . gene_id "HUERSP1_Xp11.21"; transcript_id "HUERSP1_Xp11.21"; locus "HUERSP1_Xp11.21"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0218"; model_cov "993"; model_pct "15.9"; chrX rmsk exon 57973880 57974495 3440 - . gene_id "HUERSP1_Xp11.21"; transcript_id "HUERSP1_Xp11.21"; locus "HUERSP1_Xp11.21"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0218"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "1"; repStart "-102"; chrX rmsk exon 57974496 57975029 2614 - . gene_id "HUERSP1_Xp11.21"; transcript_id "HUERSP1_Xp11.21"; locus "HUERSP1_Xp11.21"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0218"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "5738"; repStart "0"; chrX rmsk exon 57975025 57975221 1081 - . gene_id "HUERSP1_Xp11.21"; transcript_id "HUERSP1_Xp11.21"; locus "HUERSP1_Xp11.21"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0218"; repClass "LTR"; repEnd "5512"; repFamily "ERV1"; repLeft "5308"; repStart "-751"; chrX rmsk exon 57975222 57975514 1277 - . gene_id "HUERSP1_Xp11.21"; transcript_id "HUERSP1_Xp11.21"; locus "HUERSP1_Xp11.21"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0218"; repClass "LTR"; repEnd "5265"; repFamily "ERV1"; repLeft "5001"; repStart "-998"; ### HERVL_Xp11.21e ### chrX rmsk gene 58046903 58052540 . + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1289"; model_cov "3610"; model_pct "63.8"; chrX rmsk exon 58046903 58046956 274 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "399"; chrX rmsk exon 58046962 58047152 1135 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "193"; repFamily "ERVL"; repLeft "-5461"; repStart "3"; chrX rmsk exon 58048230 58049321 19853 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "1304"; repFamily "ERVL"; repLeft "-4350"; repStart "185"; chrX rmsk exon 58049701 58051603 19853 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "3210"; repFamily "ERVL"; repLeft "-2444"; repStart "1305"; chrX rmsk exon 58051601 58051991 2279 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5258"; chrX rmsk exon 58051992 58052540 2512 + . gene_id "HERVL_Xp11.21e"; transcript_id "HERVL_Xp11.21e"; locus "HERVL_Xp11.21e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1289"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVK11D_Xq11.1 ### chrX rmsk gene 62707617 62717099 . - . gene_id "HERVK11D_Xq11.1"; transcript_id "HERVK11D_Xq11.1"; locus "HERVK11D_Xq11.1"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0027"; model_cov "7739"; model_pct "99.8"; chrX rmsk exon 62707617 62708459 4358 - . gene_id "HERVK11D_Xq11.1"; transcript_id "HERVK11D_Xq11.1"; locus "HERVK11D_Xq11.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0027"; repClass "LTR"; repEnd "876"; repFamily "ERVK"; repLeft "1"; repStart "-21"; chrX rmsk exon 62708460 62712216 20387 - . gene_id "HERVK11D_Xq11.1"; transcript_id "HERVK11D_Xq11.1"; locus "HERVK11D_Xq11.1"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0027"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "3989"; repStart "0"; chrX rmsk exon 62712333 62716266 19695 - . gene_id "HERVK11D_Xq11.1"; transcript_id "HERVK11D_Xq11.1"; locus "HERVK11D_Xq11.1"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0027"; repClass "LTR"; repEnd "3979"; repFamily "ERVK"; repLeft "3"; repStart "-3773"; chrX rmsk exon 62716267 62717099 4642 - . gene_id "HERVK11D_Xq11.1"; transcript_id "HERVK11D_Xq11.1"; locus "HERVK11D_Xq11.1"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0027"; repClass "LTR"; repEnd "883"; repFamily "ERVK"; repLeft "1"; repStart "-14"; ### HML2_Xq11.1 ### chrX rmsk gene 62740079 62742584 . + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0125"; model_cov "2423"; model_pct "32.2"; chrX rmsk exon 62740079 62740554 2893 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "4986"; chrX rmsk exon 62740560 62742508 10851 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "5587"; chrX rmsk exon 62742511 62742584 630 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "74"; repFamily "ERVK"; repLeft "-928"; repStart "1"; ### HML3_Xq11.1 ### chrX rmsk gene 62753635 62759725 . - . gene_id "HML3_Xq11.1"; transcript_id "HML3_Xq11.1"; locus "HML3_Xq11.1"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0239"; model_cov "5119"; model_pct "85.0"; chrX rmsk exon 62753635 62754142 3382 - . gene_id "HML3_Xq11.1"; transcript_id "HML3_Xq11.1"; locus "HML3_Xq11.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0239"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 62754143 62755995 13558 - . gene_id "HML3_Xq11.1"; transcript_id "HML3_Xq11.1"; locus "HML3_Xq11.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0239"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4167"; repStart "0"; chrX rmsk exon 62755981 62759213 23699 - . gene_id "HML3_Xq11.1"; transcript_id "HML3_Xq11.1"; locus "HML3_Xq11.1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0239"; repClass "LTR"; repEnd "3266"; repFamily "ERVK"; repLeft "1"; repStart "-2755"; chrX rmsk exon 62759214 62759725 3590 - . gene_id "HML3_Xq11.1"; transcript_id "HML3_Xq11.1"; locus "HML3_Xq11.1"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0239"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_Xq11.1a ### chrX rmsk gene 62847728 62853750 . + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1801"; model_cov "4892"; model_pct "85.6"; chrX rmsk exon 62847728 62848210 1003 + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1801"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "-152"; chrX rmsk exon 62848216 62848494 8287 + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1801"; repClass "LTR"; repEnd "321"; repFamily "ERVL"; repLeft "-5393"; repStart "53"; chrX rmsk exon 62848875 62851047 8901 + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1801"; repClass "LTR"; repEnd "2530"; repFamily "ERVL"; repLeft "-3184"; repStart "275"; chrX rmsk exon 62851046 62853417 11604 + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1801"; repClass "LTR"; repEnd "5703"; repFamily "ERVL"; repLeft "-11"; repStart "3334"; chrX rmsk exon 62853429 62853750 1132 + . gene_id "ERVLB4_Xq11.1a"; transcript_id "ERVLB4_Xq11.1a"; locus "ERVLB4_Xq11.1a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1801"; repClass "LTR"; repEnd "325"; repFamily "ERVL"; repLeft "-89"; repStart "1"; ### MER41_Xq11.1a ### chrX rmsk gene 62929698 62934354 . - . gene_id "MER41_Xq11.1a"; transcript_id "MER41_Xq11.1a"; locus "MER41_Xq11.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0583"; model_cov "5554"; model_pct "93.4"; chrX rmsk exon 62929698 62933275 13047 - . gene_id "MER41_Xq11.1a"; transcript_id "MER41_Xq11.1a"; locus "MER41_Xq11.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0583"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "1318"; repStart "-3"; chrX rmsk exon 62933567 62934252 3891 - . gene_id "MER41_Xq11.1a"; transcript_id "MER41_Xq11.1a"; locus "MER41_Xq11.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0583"; repClass "LTR"; repEnd "968"; repFamily "ERV1"; repLeft "124"; repStart "-4978"; chrX rmsk exon 62934282 62934354 2068 - . gene_id "MER41_Xq11.1a"; transcript_id "MER41_Xq11.1a"; locus "MER41_Xq11.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0583"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "38"; repStart "-5823"; ### MER4_Xq11.1a ### chrX rmsk gene 62941366 62942363 . + . gene_id "MER4_Xq11.1a"; transcript_id "MER4_Xq11.1a"; locus "MER4_Xq11.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0830"; model_cov "797"; model_pct "12.1"; chrX rmsk exon 62941366 62941528 781 + . gene_id "MER4_Xq11.1a"; transcript_id "MER4_Xq11.1a"; locus "MER4_Xq11.1a"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0830"; repClass "LTR"; repEnd "302"; repFamily "ERV1"; repLeft "-163"; repStart "130"; chrX rmsk exon 62941552 62941951 1248 + . gene_id "MER4_Xq11.1a"; transcript_id "MER4_Xq11.1a"; locus "MER4_Xq11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0830"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-6126"; repStart "132"; chrX rmsk exon 62941933 62942094 286 + . gene_id "MER4_Xq11.1a"; transcript_id "MER4_Xq11.1a"; locus "MER4_Xq11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0830"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-5757"; repStart "618"; chrX rmsk exon 62942134 62942363 695 + . gene_id "MER4_Xq11.1a"; transcript_id "MER4_Xq11.1a"; locus "MER4_Xq11.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0830"; repClass "LTR"; repEnd "1496"; repFamily "ERV1"; repLeft "-5102"; repStart "1262"; ### MER4_Xq11.1b ### chrX rmsk gene 62951760 62959005 . + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0831"; model_cov "4336"; model_pct "65.7"; chrX rmsk exon 62951760 62951981 3165 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "1110"; repFamily "ERV1"; repLeft "-5488"; repStart "876"; chrX rmsk exon 62952276 62952311 3165 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "1173"; repFamily "ERV1"; repLeft "-5425"; repStart "1111"; chrX rmsk exon 62952613 62953520 3165 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "2079"; repFamily "ERV1"; repLeft "-4519"; repStart "1174"; chrX rmsk exon 62953740 62954265 2726 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "3773"; repFamily "ERV1"; repLeft "-2825"; repStart "3298"; chrX rmsk exon 62954271 62955351 7891 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "5063"; repFamily "ERV1"; repLeft "-1535"; repStart "3945"; chrX rmsk exon 62955654 62956842 7891 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "6236"; repFamily "ERV1"; repLeft "-362"; repStart "5064"; chrX rmsk exon 62958174 62958547 1824 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0831"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6223"; chrX rmsk exon 62958563 62959005 2114 + . gene_id "MER4_Xq11.1b"; transcript_id "MER4_Xq11.1b"; locus "MER4_Xq11.1b"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0831"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### PRIMA41_Xq11.1 ### chrX rmsk gene 63040537 63043605 . - . gene_id "PRIMA41_Xq11.1"; transcript_id "PRIMA41_Xq11.1"; locus "PRIMA41_Xq11.1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0170"; model_cov "2754"; model_pct "35.5"; chrX rmsk exon 63040537 63042947 1891 - . gene_id "PRIMA41_Xq11.1"; transcript_id "PRIMA41_Xq11.1"; locus "PRIMA41_Xq11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0170"; repClass "LTR"; repEnd "4991"; repFamily "ERV1"; repLeft "2579"; repStart "-2765"; chrX rmsk exon 63043240 63043605 765 - . gene_id "PRIMA41_Xq11.1"; transcript_id "PRIMA41_Xq11.1"; locus "PRIMA41_Xq11.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0170"; repClass "LTR"; repEnd "3727"; repFamily "ERV1"; repLeft "3385"; repStart "-4029"; ### HERVFRD_Xq11.1a ### chrX rmsk gene 63077380 63083696 . + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0191"; model_cov "3323"; model_pct "46.1"; chrX rmsk exon 63077380 63078108 3613 + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0191"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "-12"; repStart "1"; chrX rmsk exon 63078109 63079605 7326 + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0191"; repClass "LTR"; repEnd "1521"; repFamily "ERV1"; repLeft "-5684"; repStart "7"; chrX rmsk exon 63079654 63079789 409 + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0191"; repClass "LTR"; repEnd "1634"; repFamily "ERV1"; repLeft "-5571"; repStart "1505"; chrX rmsk exon 63079951 63080155 876 + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0191"; repClass "LTR"; repEnd "1888"; repFamily "ERV1"; repLeft "-5317"; repStart "1674"; chrX rmsk exon 63082118 63083696 5870 + . gene_id "HERVFRD_Xq11.1a"; transcript_id "HERVFRD_Xq11.1a"; locus "HERVFRD_Xq11.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0191"; repClass "LTR"; repEnd "3370"; repFamily "ERV1"; repLeft "-3835"; repStart "1904"; ### HERV4_Xq11.1 ### chrX rmsk gene 63083834 63086488 . + . gene_id "HERV4_Xq11.1"; transcript_id "HERV4_Xq11.1"; locus "HERV4_Xq11.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0141"; model_cov "2083"; model_pct "31.9"; chrX rmsk exon 63083834 63084474 1000 + . gene_id "HERV4_Xq11.1"; transcript_id "HERV4_Xq11.1"; locus "HERV4_Xq11.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0141"; repClass "LTR"; repEnd "3591"; repFamily "ERV1"; repLeft "-2948"; repStart "2947"; chrX rmsk exon 63085032 63086488 830 + . gene_id "HERV4_Xq11.1"; transcript_id "HERV4_Xq11.1"; locus "HERV4_Xq11.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0141"; repClass "LTR"; repEnd "5644"; repFamily "ERV1"; repLeft "-895"; repStart "4205"; ### HERVFRD_Xq11.1b ### chrX rmsk gene 63087730 63088833 . + . gene_id "HERVFRD_Xq11.1b"; transcript_id "HERVFRD_Xq11.1b"; locus "HERVFRD_Xq11.1b"; category "internal"; intModel "MER50-int"; locid "MER50-int_0192"; model_cov "1043"; model_pct "14.5"; chrX rmsk exon 63087730 63088833 5634 + . gene_id "HERVFRD_Xq11.1b"; transcript_id "HERVFRD_Xq11.1b"; locus "HERVFRD_Xq11.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0192"; repClass "LTR"; repEnd "7129"; repFamily "ERV1"; repLeft "-76"; repStart "6086"; ### MER4_Xq11.1c ### chrX rmsk gene 63134217 63135655 . + . gene_id "MER4_Xq11.1c"; transcript_id "MER4_Xq11.1c"; locus "MER4_Xq11.1c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0833"; model_cov "1039"; model_pct "15.7"; chrX rmsk exon 63134217 63134660 2695 + . gene_id "MER4_Xq11.1c"; transcript_id "MER4_Xq11.1c"; locus "MER4_Xq11.1c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0833"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 63134664 63135655 3970 + . gene_id "MER4_Xq11.1c"; transcript_id "MER4_Xq11.1c"; locus "MER4_Xq11.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0833"; repClass "LTR"; repEnd "1040"; repFamily "ERV1"; repLeft "-5558"; repStart "1"; ### MER41_Xq11.1b ### chrX rmsk gene 63135656 63141508 . + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0584"; model_cov "4313"; model_pct "72.5"; chrX rmsk exon 63135656 63136290 4048 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0584"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 63136291 63136978 4226 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "1"; chrX rmsk exon 63136980 63137354 1832 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "1761"; repFamily "ERV1"; repLeft "-4185"; repStart "1392"; chrX rmsk exon 63137357 63137475 702 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "-3929"; repStart "1901"; chrX rmsk exon 63137472 63138610 5795 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "2328"; repFamily "ERV1"; repLeft "-3618"; repStart "1190"; chrX rmsk exon 63138626 63138849 11499 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "4384"; repFamily "ERV1"; repLeft "-1562"; repStart "4164"; chrX rmsk exon 63138877 63140402 11499 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "5926"; repFamily "ERV1"; repLeft "-20"; repStart "4385"; chrX rmsk exon 63140399 63140630 1679 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0584"; repClass "LTR"; repEnd "5926"; repFamily "ERV1"; repLeft "-20"; repStart "5686"; chrX rmsk exon 63140879 63141508 4199 + . gene_id "MER41_Xq11.1b"; transcript_id "MER41_Xq11.1b"; locus "MER41_Xq11.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0584"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_Xq11.1d ### chrX rmsk gene 63141509 63142366 . + . gene_id "MER4_Xq11.1d"; transcript_id "MER4_Xq11.1d"; locus "MER4_Xq11.1d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0835"; model_cov "893"; model_pct "13.5"; chrX rmsk exon 63141509 63142366 3846 + . gene_id "MER4_Xq11.1d"; transcript_id "MER4_Xq11.1d"; locus "MER4_Xq11.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0835"; repClass "LTR"; repEnd "1930"; repFamily "ERV1"; repLeft "-4668"; repStart "1037"; ### MER4_Xq11.1e ### chrX rmsk gene 63178669 63180312 . - . gene_id "MER4_Xq11.1e"; transcript_id "MER4_Xq11.1e"; locus "MER4_Xq11.1e"; category "internal"; intModel "MER4-int"; locid "MER4-int_0836"; model_cov "1279"; model_pct "19.4"; chrX rmsk exon 63178669 63180227 4559 - . gene_id "MER4_Xq11.1e"; transcript_id "MER4_Xq11.1e"; locus "MER4_Xq11.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0836"; repClass "LTR"; repEnd "2484"; repFamily "ERV1"; repLeft "1266"; repStart "-4114"; chrX rmsk exon 63180254 63180312 4559 - . gene_id "MER4_Xq11.1e"; transcript_id "MER4_Xq11.1e"; locus "MER4_Xq11.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0836"; repClass "LTR"; repEnd "1406"; repFamily "ERV1"; repLeft "1345"; repStart "-5192"; ### MER4_Xq11.1f ### chrX rmsk gene 63186870 63188610 . - . gene_id "MER4_Xq11.1f"; transcript_id "MER4_Xq11.1f"; locus "MER4_Xq11.1f"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0837"; model_cov "1224"; model_pct "18.6"; chrX rmsk exon 63186870 63187050 639 - . gene_id "MER4_Xq11.1f"; transcript_id "MER4_Xq11.1f"; locus "MER4_Xq11.1f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0837"; repClass "LTR"; repEnd "2278"; repFamily "ERV1"; repLeft "2158"; repStart "-4320"; chrX rmsk exon 63187077 63188062 3765 - . gene_id "MER4_Xq11.1f"; transcript_id "MER4_Xq11.1f"; locus "MER4_Xq11.1f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0837"; repClass "LTR"; repEnd "1117"; repFamily "ERV1"; repLeft "13"; repStart "-5481"; chrX rmsk exon 63188077 63188610 2158 - . gene_id "MER4_Xq11.1f"; transcript_id "MER4_Xq11.1f"; locus "MER4_Xq11.1f"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0837"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "100"; repStart "0"; ### MER4_Xq11.1g ### chrX rmsk gene 63198633 63200276 . + . gene_id "MER4_Xq11.1g"; transcript_id "MER4_Xq11.1g"; locus "MER4_Xq11.1g"; category "internal"; intModel "MER4-int"; locid "MER4-int_0838"; model_cov "1218"; model_pct "18.5"; chrX rmsk exon 63198633 63200276 4516 + . gene_id "MER4_Xq11.1g"; transcript_id "MER4_Xq11.1g"; locus "MER4_Xq11.1g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0838"; repClass "LTR"; repEnd "2484"; repFamily "ERV1"; repLeft "-4114"; repStart "1266"; ### MER4_Xq11.1h ### chrX rmsk gene 63236583 63237440 . - . gene_id "MER4_Xq11.1h"; transcript_id "MER4_Xq11.1h"; locus "MER4_Xq11.1h"; category "internal"; intModel "MER4-int"; locid "MER4-int_0839"; model_cov "893"; model_pct "13.5"; chrX rmsk exon 63236583 63237440 3846 - . gene_id "MER4_Xq11.1h"; transcript_id "MER4_Xq11.1h"; locus "MER4_Xq11.1h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0839"; repClass "LTR"; repEnd "1930"; repFamily "ERV1"; repLeft "1037"; repStart "-4668"; ### MER41_Xq11.1c ### chrX rmsk gene 63237441 63244731 . - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; category "unknown"; intModel "MER41-int"; locid "MER41-int_0585"; model_cov "5613"; model_pct "94.4"; chrX rmsk exon 63237441 63238070 4199 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0585"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 63238071 63238322 1855 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5686"; repStart "0"; chrX rmsk exon 63238319 63238550 1679 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "5926"; repFamily "ERV1"; repLeft "5686"; repStart "-20"; chrX rmsk exon 63238547 63240322 11481 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "5926"; repFamily "ERV1"; repLeft "4164"; repStart "-20"; chrX rmsk exon 63240338 63241476 5795 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "2328"; repFamily "ERV1"; repLeft "1190"; repStart "-3618"; chrX rmsk exon 63241473 63241591 702 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1901"; repStart "-3929"; chrX rmsk exon 63241594 63241968 1832 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "1761"; repFamily "ERV1"; repLeft "1392"; repStart "-4185"; chrX rmsk exon 63241970 63242657 4226 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chrX rmsk exon 63242658 63243292 4048 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0585"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 63243293 63244284 3970 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0585"; repClass "LTR"; repEnd "388"; repFamily "ERV1"; repLeft "-651"; repStart "-5558"; chrX rmsk exon 63244288 63244731 2695 - . gene_id "MER41_Xq11.1c"; transcript_id "MER41_Xq11.1c"; locus "MER41_Xq11.1c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0585"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "163"; repStart "0"; ### MER4B_Xq11.1a ### chrX rmsk gene 63257855 63261076 . - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0495"; model_cov "2149"; model_pct "31.8"; chrX rmsk exon 63257855 63258255 2896 - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0495"; repClass "LTR"; repEnd "438"; repFamily "ERV1"; repLeft "1"; repStart "-343"; chrX rmsk exon 63259096 63260077 5634 - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0495"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "5626"; repStart "-113"; chrX rmsk exon 63260085 63260345 1304 - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0495"; repClass "LTR"; repEnd "5383"; repFamily "ERV1"; repLeft "5073"; repStart "-1375"; chrX rmsk exon 63260364 63260847 1557 - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0495"; repClass "LTR"; repEnd "5028"; repFamily "ERV1"; repLeft "4452"; repStart "-1730"; chrX rmsk exon 63260847 63261076 1144 - . gene_id "MER4B_Xq11.1a"; transcript_id "MER4B_Xq11.1a"; locus "MER4B_Xq11.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0495"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3844"; repStart "-2670"; ### MER4B_Xq11.1b ### chrX rmsk gene 63267012 63272093 . - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0496"; model_cov "3495"; model_pct "51.7"; chrX rmsk exon 63267012 63268550 5557 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "3853"; repFamily "ERV1"; repLeft "1917"; repStart "-2905"; chrX rmsk exon 63270073 63270961 2173 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "1924"; repFamily "ERV1"; repLeft "929"; repStart "-4834"; chrX rmsk exon 63270974 63271125 1076 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "1189"; repFamily "ERV1"; repLeft "1069"; repStart "-5569"; chrX rmsk exon 63271438 63271579 1076 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "1068"; repFamily "ERV1"; repLeft "916"; repStart "-5690"; chrX rmsk exon 63271592 63271881 1736 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "555"; repStart "-5911"; chrX rmsk exon 63271898 63272093 1545 - . gene_id "MER4B_Xq11.1b"; transcript_id "MER4B_Xq11.1b"; locus "MER4B_Xq11.1b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0496"; repClass "LTR"; repEnd "739"; repFamily "ERV1"; repLeft "544"; repStart "-27"; ### HERVL_Xq11.1a ### chrX rmsk gene 63309763 63317045 . - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1290"; model_cov "5651"; model_pct "99.9"; chrX rmsk exon 63309763 63309837 3009 - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1290"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "383"; repStart "0"; chrX rmsk exon 63309890 63310272 3009 - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1290"; repClass "LTR"; repEnd "382"; repFamily "ERVL"; repLeft "1"; repStart "-62"; chrX rmsk exon 63310273 63313527 27643 - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1290"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2382"; repStart "0"; chrX rmsk exon 63314193 63316507 27643 - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1290"; repClass "LTR"; repEnd "2381"; repFamily "ERVL"; repLeft "2"; repStart "-3273"; chrX rmsk exon 63316608 63317045 2889 - . gene_id "HERVL_Xq11.1a"; transcript_id "HERVL_Xq11.1a"; locus "HERVL_Xq11.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1290"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### ERVLB4_Xq11.1b ### chrX rmsk gene 63322035 63327271 . + . gene_id "ERVLB4_Xq11.1b"; transcript_id "ERVLB4_Xq11.1b"; locus "ERVLB4_Xq11.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1803"; model_cov "5332"; model_pct "93.3"; chrX rmsk exon 63322035 63327271 27823 + . gene_id "ERVLB4_Xq11.1b"; transcript_id "ERVLB4_Xq11.1b"; locus "ERVLB4_Xq11.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1803"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "382"; ### HML5_Xq11.1 ### chrX rmsk gene 63358013 63364629 . - . gene_id "HML5_Xq11.1"; transcript_id "HML5_Xq11.1"; locus "HML5_Xq11.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0131"; model_cov "5250"; model_pct "76.8"; chrX rmsk exon 63358013 63358485 2289 - . gene_id "HML5_Xq11.1"; transcript_id "HML5_Xq11.1"; locus "HML5_Xq11.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0131"; repClass "LTR"; repEnd "522"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chrX rmsk exon 63358486 63362967 32673 - . gene_id "HML5_Xq11.1"; transcript_id "HML5_Xq11.1"; locus "HML5_Xq11.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0131"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2327"; repStart "0"; chrX rmsk exon 63363408 63364148 5151 - . gene_id "HML5_Xq11.1"; transcript_id "HML5_Xq11.1"; locus "HML5_Xq11.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0131"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "1"; repStart "-6096"; chrX rmsk exon 63364149 63364629 1995 - . gene_id "HML5_Xq11.1"; transcript_id "HML5_Xq11.1"; locus "HML5_Xq11.1"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0131"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HARLEQUIN_Xq11.1 ### chrX rmsk gene 63409033 63416691 . + . gene_id "HARLEQUIN_Xq11.1"; transcript_id "HARLEQUIN_Xq11.1"; locus "HARLEQUIN_Xq11.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0182"; model_cov "6245"; model_pct "90.6"; chrX rmsk exon 63409033 63409504 3231 + . gene_id "HARLEQUIN_Xq11.1"; transcript_id "HARLEQUIN_Xq11.1"; locus "HARLEQUIN_Xq11.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0182"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 63410003 63411179 8024 + . gene_id "HARLEQUIN_Xq11.1"; transcript_id "HARLEQUIN_Xq11.1"; locus "HARLEQUIN_Xq11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0182"; repClass "LTR"; repEnd "1419"; repFamily "ERV1"; repLeft "-5477"; repStart "263"; chrX rmsk exon 63411164 63416233 37136 + . gene_id "HARLEQUIN_Xq11.1"; transcript_id "HARLEQUIN_Xq11.1"; locus "HARLEQUIN_Xq11.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0182"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "1807"; chrX rmsk exon 63416234 63416691 3371 + . gene_id "HARLEQUIN_Xq11.1"; transcript_id "HARLEQUIN_Xq11.1"; locus "HARLEQUIN_Xq11.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0182"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR46_Xq11.1 ### chrX rmsk gene 63426553 63434962 . - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0022"; model_cov "7681"; model_pct "100.0"; chrX rmsk exon 63426553 63426678 276 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "276"; repStart "-54"; chrX rmsk exon 63426769 63426868 493 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "103"; repFamily "ERV1"; repLeft "1"; repStart "-357"; chrX rmsk exon 63426869 63428052 1814 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "5220"; repStart "0"; chrX rmsk exon 63428376 63433922 21627 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "6048"; repFamily "ERV1"; repLeft "670"; repStart "-937"; chrX rmsk exon 63434044 63434561 1714 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "540"; repFamily "ERV1"; repLeft "2"; repStart "-6445"; chrX rmsk exon 63434596 63434722 244 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "276"; repStart "-53"; chrX rmsk exon 63434863 63434962 403 - . gene_id "LTR46_Xq11.1"; transcript_id "LTR46_Xq11.1"; locus "LTR46_Xq11.1"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0022"; repClass "LTR"; repEnd "101"; repFamily "ERV1"; repLeft "1"; repStart "-359"; ### MER61_Xq11.1 ### chrX rmsk gene 63466685 63471338 . - . gene_id "MER61_Xq11.1"; transcript_id "MER61_Xq11.1"; locus "MER61_Xq11.1"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0388"; model_cov "5230"; model_pct "100.0"; chrX rmsk exon 63466685 63466761 443 - . gene_id "MER61_Xq11.1"; transcript_id "MER61_Xq11.1"; locus "MER61_Xq11.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0388"; repClass "LTR"; repEnd "77"; repFamily "ERV1"; repLeft "1"; repStart "-264"; chrX rmsk exon 63466764 63470472 20750 - . gene_id "MER61_Xq11.1"; transcript_id "MER61_Xq11.1"; locus "MER61_Xq11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0388"; repClass "LTR"; repEnd "4078"; repFamily "ERV1"; repLeft "-592"; repStart "-1139"; chrX rmsk exon 63470458 63471003 2888 - . gene_id "MER61_Xq11.1"; transcript_id "MER61_Xq11.1"; locus "MER61_Xq11.1"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0388"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "3"; repStart "-4654"; chrX rmsk exon 63471006 63471338 1694 - . gene_id "MER61_Xq11.1"; transcript_id "MER61_Xq11.1"; locus "MER61_Xq11.1"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0388"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq11.1b ### chrX rmsk gene 63626989 63633740 . - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_1291"; model_cov "5663"; model_pct "100.0"; chrX rmsk exon 63626989 63627029 242 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "360"; repStart "-44"; chrX rmsk exon 63627040 63627464 3022 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-108"; repStart "-40"; chrX rmsk exon 63627467 63630720 24084 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2401"; repStart "0"; chrX rmsk exon 63630736 63630833 702 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "1"; repStart "-346"; chrX rmsk exon 63630880 63633206 15140 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "2412"; repFamily "ERVL"; repLeft "2"; repStart "-3242"; chrX rmsk exon 63633208 63633274 271 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chrX rmsk exon 63633318 63633740 2992 - . gene_id "HERVL_Xq11.1b"; transcript_id "HERVL_Xq11.1b"; locus "HERVL_Xq11.1b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1291"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-110"; repStart "-40"; ### MER4_Xq11.2a ### chrX rmsk gene 63922908 63924859 . + . gene_id "MER4_Xq11.2a"; transcript_id "MER4_Xq11.2a"; locus "MER4_Xq11.2a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0841"; model_cov "1177"; model_pct "17.8"; chrX rmsk exon 63922908 63923139 6515 + . gene_id "MER4_Xq11.2a"; transcript_id "MER4_Xq11.2a"; locus "MER4_Xq11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0841"; repClass "LTR"; repEnd "5638"; repFamily "ERV1"; repLeft "-960"; repStart "5417"; chrX rmsk exon 63923439 63924407 6515 + . gene_id "MER4_Xq11.2a"; transcript_id "MER4_Xq11.2a"; locus "MER4_Xq11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0841"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "5639"; chrX rmsk exon 63924421 63924859 2892 + . gene_id "MER4_Xq11.2a"; transcript_id "MER4_Xq11.2a"; locus "MER4_Xq11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0841"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xq11.2 ### chrX rmsk gene 64213387 64218966 . - . gene_id "ERVLB4_Xq11.2"; transcript_id "ERVLB4_Xq11.2"; locus "ERVLB4_Xq11.2"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1805"; model_cov "5713"; model_pct "100.0"; chrX rmsk exon 64213387 64218966 34721 - . gene_id "ERVLB4_Xq11.2"; transcript_id "ERVLB4_Xq11.2"; locus "ERVLB4_Xq11.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1805"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER4_Xq11.2b ### chrX rmsk gene 64426323 64427486 . + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0842"; model_cov "1074"; model_pct "16.3"; chrX rmsk exon 64426323 64426477 1166 + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0842"; repClass "LTR"; repEnd "159"; repFamily "ERV1"; repLeft "-313"; repStart "1"; chrX rmsk exon 64426463 64426553 586 + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0842"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "-7"; repStart "378"; chrX rmsk exon 64426562 64427208 3053 + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0842"; repClass "LTR"; repEnd "834"; repFamily "ERV1"; repLeft "-5764"; repStart "1"; chrX rmsk exon 64427274 64427388 621 + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0842"; repClass "LTR"; repEnd "1379"; repFamily "ERV1"; repLeft "-5219"; repStart "1262"; chrX rmsk exon 64427386 64427486 311 + . gene_id "MER4_Xq11.2b"; transcript_id "MER4_Xq11.2b"; locus "MER4_Xq11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0842"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2304"; ### MER4_Xq11.2c ### chrX rmsk gene 64427573 64432182 . + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0843"; model_cov "4607"; model_pct "69.8"; chrX rmsk exon 64427573 64428224 4404 + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0843"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "38"; chrX rmsk exon 64428246 64428499 1474 + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0843"; repClass "LTR"; repEnd "1028"; repFamily "ERV1"; repLeft "-5570"; repStart "764"; chrX rmsk exon 64428511 64429235 4420 + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0843"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1756"; chrX rmsk exon 64429470 64430295 3787 + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0843"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2731"; chrX rmsk exon 64430295 64432182 11302 + . gene_id "MER4_Xq11.2c"; transcript_id "MER4_Xq11.2c"; locus "MER4_Xq11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0843"; repClass "LTR"; repEnd "5842"; repFamily "ERV1"; repLeft "-756"; repStart "3837"; ### MER4_Xq11.2d ### chrX rmsk gene 64435691 64436899 . + . gene_id "MER4_Xq11.2d"; transcript_id "MER4_Xq11.2d"; locus "MER4_Xq11.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0844"; model_cov "771"; model_pct "11.7"; chrX rmsk exon 64435691 64436425 4338 + . gene_id "MER4_Xq11.2d"; transcript_id "MER4_Xq11.2d"; locus "MER4_Xq11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0844"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5825"; chrX rmsk exon 64436434 64436899 3370 + . gene_id "MER4_Xq11.2d"; transcript_id "MER4_Xq11.2d"; locus "MER4_Xq11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0844"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq11.2a ### chrX rmsk gene 64450660 64454951 . - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1292"; model_cov "3441"; model_pct "60.9"; chrX rmsk exon 64450660 64450699 2849 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "392"; repStart "0"; chrX rmsk exon 64450774 64451161 2849 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "2"; repStart "-53"; chrX rmsk exon 64451162 64451237 509 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5579"; repStart "0"; chrX rmsk exon 64451254 64454595 23850 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "3367"; repFamily "ERVL"; repLeft "1"; repStart "-2287"; chrX rmsk exon 64454596 64454767 1008 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "273"; repStart "0"; chrX rmsk exon 64454762 64454951 1318 - . gene_id "HERVL_Xq11.2a"; transcript_id "HERVL_Xq11.2a"; locus "HERVL_Xq11.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1292"; repClass "LTR"; repEnd "191"; repFamily "ERVL"; repLeft "1"; repStart "-253"; ### HERVL_Xq11.2b ### chrX rmsk gene 64626166 64632545 . + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1293"; model_cov "5466"; model_pct "96.7"; chrX rmsk exon 64626166 64626542 2564 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chrX rmsk exon 64626585 64626629 2564 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "386"; chrX rmsk exon 64626630 64631703 35681 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "5104"; repFamily "ERVL"; repLeft "-550"; repStart "1"; chrX rmsk exon 64631703 64632056 2189 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5291"; chrX rmsk exon 64632057 64632311 1515 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "262"; repFamily "ERVL"; repLeft "-182"; repStart "1"; chrX rmsk exon 64632493 64632545 338 + . gene_id "HERVL_Xq11.2b"; transcript_id "HERVL_Xq11.2b"; locus "HERVL_Xq11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1293"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "393"; ### HERVH_Xq11.2a ### chrX rmsk gene 64651096 64657665 . + . gene_id "HERVH_Xq11.2a"; transcript_id "HERVH_Xq11.2a"; locus "HERVH_Xq11.2a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1239"; model_cov "5954"; model_pct "77.2"; chrX rmsk exon 64651096 64657166 26252 + . gene_id "HERVH_Xq11.2a"; transcript_id "HERVH_Xq11.2a"; locus "HERVH_Xq11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1239"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "1759"; chrX rmsk exon 64657168 64657665 3250 + . gene_id "HERVH_Xq11.2a"; transcript_id "HERVH_Xq11.2a"; locus "HERVH_Xq11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1239"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HERVL_Xq11.2c ### chrX rmsk gene 64737241 64743851 . - . gene_id "HERVL_Xq11.2c"; transcript_id "HERVL_Xq11.2c"; locus "HERVL_Xq11.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1294"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 64737241 64737307 287 - . gene_id "HERVL_Xq11.2c"; transcript_id "HERVL_Xq11.2c"; locus "HERVL_Xq11.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1294"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "370"; repStart "-2"; chrX rmsk exon 64737449 64737756 2335 - . gene_id "HERVL_Xq11.2c"; transcript_id "HERVL_Xq11.2c"; locus "HERVL_Xq11.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1294"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "1"; repStart "-131"; chrX rmsk exon 64737757 64743413 42177 - . gene_id "HERVL_Xq11.2c"; transcript_id "HERVL_Xq11.2c"; locus "HERVL_Xq11.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1294"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 64743414 64743851 2314 - . gene_id "HERVL_Xq11.2c"; transcript_id "HERVL_Xq11.2c"; locus "HERVL_Xq11.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1294"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML5_Xq11.2a ### chrX rmsk gene 64781222 64786832 . - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0132"; model_cov "4578"; model_pct "67.0"; chrX rmsk exon 64781222 64781682 2412 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 64781684 64783646 12098 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "3188"; repStart "-1502"; chrX rmsk exon 64783653 64785148 10475 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "3644"; repFamily "ERVK"; repLeft "2144"; repStart "-3193"; chrX rmsk exon 64785149 64785496 6109 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "935"; repFamily "ERVK"; repLeft "593"; repStart "-5902"; chrX rmsk exon 64785804 64786380 6109 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "592"; repFamily "ERVK"; repLeft "3"; repStart "-6245"; chrX rmsk exon 64786383 64786832 2426 - . gene_id "HML5_Xq11.2a"; transcript_id "HML5_Xq11.2a"; locus "HML5_Xq11.2a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0132"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "5"; repStart "0"; ### HERVFH21_Xq11.2a ### chrX rmsk gene 64842515 64848198 . + . gene_id "HERVFH21_Xq11.2a"; transcript_id "HERVFH21_Xq11.2a"; locus "HERVFH21_Xq11.2a"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0039"; model_cov "5332"; model_pct "81.7"; chrX rmsk exon 64842515 64842766 301 + . gene_id "HERVFH21_Xq11.2a"; transcript_id "HERVFH21_Xq11.2a"; locus "HERVFH21_Xq11.2a"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0039"; repClass "LTR"; repEnd "283"; repFamily "ERVL"; repLeft "-228"; repStart "34"; chrX rmsk exon 64842607 64842898 732 + . gene_id "HERVFH21_Xq11.2a"; transcript_id "HERVFH21_Xq11.2a"; locus "HERVFH21_Xq11.2a"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0039"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "118"; chrX rmsk exon 64842899 64848198 23003 + . gene_id "HERVFH21_Xq11.2a"; transcript_id "HERVFH21_Xq11.2a"; locus "HERVFH21_Xq11.2a"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0039"; repClass "LTR"; repEnd "5333"; repFamily "ERV1"; repLeft "-1196"; repStart "1"; ### HERVFH21_Xq11.2b ### chrX rmsk gene 64848467 64851088 . + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0040"; model_cov "3067"; model_pct "47.0"; chrX rmsk exon 64848467 64848709 502 + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0040"; repClass "LTR"; repEnd "4599"; repFamily "ERV1"; repLeft "-1930"; repStart "4396"; chrX rmsk exon 64848720 64848921 312 + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0040"; repClass "LTR"; repEnd "4692"; repFamily "ERV1"; repLeft "-1837"; repStart "4490"; chrX rmsk exon 64848898 64850686 2942 + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0040"; repClass "LTR"; repEnd "6109"; repFamily "ERV1"; repLeft "-420"; repStart "3447"; chrX rmsk exon 64850688 64851086 481 + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; repName "LTR21C"; geneRegion "ltr"; locid "HERVFH21-int_0040"; repClass "LTR"; repEnd "495"; repFamily "ERVL"; repLeft "-16"; repStart "1"; chrX rmsk exon 64850819 64851088 814 + . gene_id "HERVFH21_Xq11.2b"; transcript_id "HERVFH21_Xq11.2b"; locus "HERVFH21_Xq11.2b"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0040"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-1"; repStart "192"; ### HERVH_Xq11.2b ### chrX rmsk gene 65129300 65135094 . - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1240"; model_cov "5585"; model_pct "72.4"; chrX rmsk exon 65129300 65129689 2418 - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1240"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 65129690 65130122 2807 - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1240"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chrX rmsk exon 65130127 65131369 7045 - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1240"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "4868"; repStart "-1290"; chrX rmsk exon 65131361 65134712 16638 - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1240"; repClass "LTR"; repEnd "3601"; repFamily "ERV1"; repLeft "1"; repStart "-4112"; chrX rmsk exon 65134713 65135094 2186 - . gene_id "HERVH_Xq11.2b"; transcript_id "HERVH_Xq11.2b"; locus "HERVH_Xq11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1240"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_Xq11.2b ### chrX rmsk gene 65195573 65198216 . + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0133"; model_cov "1407"; model_pct "20.6"; chrX rmsk exon 65195573 65196169 4165 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "600"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 65196269 65196960 3989 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "688"; repFamily "ERVK"; repLeft "-6149"; repStart "9"; chrX rmsk exon 65197421 65197461 263 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "2367"; repFamily "ERVK"; repLeft "-4470"; repStart "2327"; chrX rmsk exon 65197538 65197619 528 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "-3930"; repStart "2825"; chrX rmsk exon 65197612 65197664 328 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4292"; repStart "2493"; chrX rmsk exon 65197664 65198216 3610 + . gene_id "HML5_Xq11.2b"; transcript_id "HML5_Xq11.2b"; locus "HML5_Xq11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0133"; repClass "LTR"; repEnd "4209"; repFamily "ERVK"; repLeft "-2628"; repStart "3655"; ### MER41_Xq11.2a ### chrX rmsk gene 65331593 65332758 . - . gene_id "MER41_Xq11.2a"; transcript_id "MER41_Xq11.2a"; locus "MER41_Xq11.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0586"; model_cov "820"; model_pct "13.8"; chrX rmsk exon 65331593 65332144 3917 - . gene_id "MER41_Xq11.2a"; transcript_id "MER41_Xq11.2a"; locus "MER41_Xq11.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0586"; repClass "LTR"; repEnd "553"; repFamily "ERV1"; repLeft "1"; repStart "-81"; chrX rmsk exon 65332145 65332758 11471 - . gene_id "MER41_Xq11.2a"; transcript_id "MER41_Xq11.2a"; locus "MER41_Xq11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0586"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5126"; repStart "0"; ### MER41_Xq11.2b ### chrX rmsk gene 65332796 65337423 . - . gene_id "MER41_Xq11.2b"; transcript_id "MER41_Xq11.2b"; locus "MER41_Xq11.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0587"; model_cov "5141"; model_pct "86.5"; chrX rmsk exon 65332796 65334489 11471 - . gene_id "MER41_Xq11.2b"; transcript_id "MER41_Xq11.2b"; locus "MER41_Xq11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0587"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3677"; repStart "0"; chrX rmsk exon 65334478 65335289 4505 - . gene_id "MER41_Xq11.2b"; transcript_id "MER41_Xq11.2b"; locus "MER41_Xq11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0587"; repClass "LTR"; repEnd "2046"; repFamily "ERV1"; repLeft "1190"; repStart "-3900"; chrX rmsk exon 65335286 65337269 11572 - . gene_id "MER41_Xq11.2b"; transcript_id "MER41_Xq11.2b"; locus "MER41_Xq11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0587"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1"; repStart "-3929"; chrX rmsk exon 65337270 65337423 1038 - . gene_id "MER41_Xq11.2b"; transcript_id "MER41_Xq11.2b"; locus "MER41_Xq11.2b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0587"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### HERVH_Xq11.2c ### chrX rmsk gene 65361589 65365949 . + . gene_id "HERVH_Xq11.2c"; transcript_id "HERVH_Xq11.2c"; locus "HERVH_Xq11.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1241"; model_cov "3957"; model_pct "51.3"; chrX rmsk exon 65361589 65365223 15459 + . gene_id "HERVH_Xq11.2c"; transcript_id "HERVH_Xq11.2c"; locus "HERVH_Xq11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1241"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "-2699"; repStart "1487"; chrX rmsk exon 65365232 65365662 2540 + . gene_id "HERVH_Xq11.2c"; transcript_id "HERVH_Xq11.2c"; locus "HERVH_Xq11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1241"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7283"; chrX rmsk exon 65365663 65365949 1339 + . gene_id "HERVH_Xq11.2c"; transcript_id "HERVH_Xq11.2c"; locus "HERVH_Xq11.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1241"; repClass "LTR"; repEnd "387"; repFamily "ERV1"; repLeft "-63"; repStart "1"; ### ERVLB4_Xq12a ### chrX rmsk gene 65418398 65422525 . + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1806"; model_cov "2442"; model_pct "42.7"; chrX rmsk exon 65418398 65419397 5794 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "2415"; repFamily "ERVL"; repLeft "-3299"; repStart "1358"; chrX rmsk exon 65420785 65421217 2706 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "2833"; repFamily "ERVL"; repLeft "-2881"; repStart "2401"; chrX rmsk exon 65421219 65421679 4791 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "4516"; repFamily "ERVL"; repLeft "-1198"; repStart "4044"; chrX rmsk exon 65421967 65422362 4791 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "4903"; repFamily "ERVL"; repLeft "-811"; repStart "4517"; chrX rmsk exon 65422366 65422459 448 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "5618"; chrX rmsk exon 65422461 65422525 324 + . gene_id "ERVLB4_Xq12a"; transcript_id "ERVLB4_Xq12a"; locus "ERVLB4_Xq12a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1806"; repClass "LTR"; repEnd "67"; repFamily "ERVL"; repLeft "-489"; repStart "1"; ### ERVLB4_Xq12b ### chrX rmsk gene 65431024 65435944 . - . gene_id "ERVLB4_Xq12b"; transcript_id "ERVLB4_Xq12b"; locus "ERVLB4_Xq12b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1807"; model_cov "4596"; model_pct "80.4"; chrX rmsk exon 65431024 65435607 23831 - . gene_id "ERVLB4_Xq12b"; transcript_id "ERVLB4_Xq12b"; locus "ERVLB4_Xq12b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1807"; repClass "LTR"; repEnd "4597"; repFamily "ERVL"; repLeft "1"; repStart "-1117"; chrX rmsk exon 65435608 65435644 2379 - . gene_id "ERVLB4_Xq12b"; transcript_id "ERVLB4_Xq12b"; locus "ERVLB4_Xq12b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1807"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "516"; repStart "-2"; chrX rmsk exon 65435716 65435944 2379 - . gene_id "ERVLB4_Xq12b"; transcript_id "ERVLB4_Xq12b"; locus "ERVLB4_Xq12b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1807"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "280"; repStart "-39"; ### HML3_Xq12a ### chrX rmsk gene 65438453 65440151 . - . gene_id "HML3_Xq12a"; transcript_id "HML3_Xq12a"; locus "HML3_Xq12a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0240"; model_cov "1299"; model_pct "21.6"; chrX rmsk exon 65438453 65438941 3875 - . gene_id "HML3_Xq12a"; transcript_id "HML3_Xq12a"; locus "HML3_Xq12a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0240"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 65438942 65440050 3295 - . gene_id "HML3_Xq12a"; transcript_id "HML3_Xq12a"; locus "HML3_Xq12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0240"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "4757"; repStart "0"; chrX rmsk exon 65440116 65440151 282 - . gene_id "HML3_Xq12a"; transcript_id "HML3_Xq12a"; locus "HML3_Xq12a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0240"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3918"; repStart "-2068"; ### HML3_Xq12b ### chrX rmsk gene 65440169 65442522 . - . gene_id "HML3_Xq12b"; transcript_id "HML3_Xq12b"; locus "HML3_Xq12b"; category "internal"; intModel "HERVK9-int"; locid "HERVK9-int_0241"; model_cov "2400"; model_pct "39.9"; chrX rmsk exon 65440169 65440553 3115 - . gene_id "HML3_Xq12b"; transcript_id "HML3_Xq12b"; locus "HML3_Xq12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0241"; repClass "LTR"; repEnd "4107"; repFamily "ERVK"; repLeft "3723"; repStart "-1914"; chrX rmsk exon 65440554 65442522 20046 - . gene_id "HML3_Xq12b"; transcript_id "HML3_Xq12b"; locus "HML3_Xq12b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0241"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "782"; repStart "-3223"; ### HML3_Xq12c ### chrX rmsk gene 65442580 65443849 . - . gene_id "HML3_Xq12c"; transcript_id "HML3_Xq12c"; locus "HML3_Xq12c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0242"; model_cov "780"; model_pct "13.0"; chrX rmsk exon 65442580 65443340 20046 - . gene_id "HML3_Xq12c"; transcript_id "HML3_Xq12c"; locus "HML3_Xq12c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0242"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "2018"; repStart "-3223"; chrX rmsk exon 65443341 65443849 3772 - . gene_id "HML3_Xq12c"; transcript_id "HML3_Xq12c"; locus "HML3_Xq12c"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0242"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10FH_Xq12 ### chrX rmsk gene 65927286 65933055 . - . gene_id "HERVIP10FH_Xq12"; transcript_id "HERVIP10FH_Xq12"; locus "HERVIP10FH_Xq12"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0207"; model_cov "4613"; model_pct "90.4"; chrX rmsk exon 65927286 65927777 3489 - . gene_id "HERVIP10FH_Xq12"; transcript_id "HERVIP10FH_Xq12"; locus "HERVIP10FH_Xq12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0207"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 65927778 65929290 9758 - . gene_id "HERVIP10FH_Xq12"; transcript_id "HERVIP10FH_Xq12"; locus "HERVIP10FH_Xq12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0207"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "3583"; repStart "0"; chrX rmsk exon 65929352 65932450 15693 - . gene_id "HERVIP10FH_Xq12"; transcript_id "HERVIP10FH_Xq12"; locus "HERVIP10FH_Xq12"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0207"; repClass "LTR"; repEnd "3097"; repFamily "ERV1"; repLeft "3"; repStart "-2005"; chrX rmsk exon 65932453 65933055 3075 - . gene_id "HERVIP10FH_Xq12"; transcript_id "HERVIP10FH_Xq12"; locus "HERVIP10FH_Xq12"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0207"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_Xq12 ### chrX rmsk gene 66218551 66226301 . - . gene_id "HARLEQUIN_Xq12"; transcript_id "HARLEQUIN_Xq12"; locus "HARLEQUIN_Xq12"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0183"; model_cov "6893"; model_pct "100.0"; chrX rmsk exon 66218551 66219013 3930 - . gene_id "HARLEQUIN_Xq12"; transcript_id "HARLEQUIN_Xq12"; locus "HARLEQUIN_Xq12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0183"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 66219014 66224821 32872 - . gene_id "HARLEQUIN_Xq12"; transcript_id "HARLEQUIN_Xq12"; locus "HARLEQUIN_Xq12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0183"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1083"; repStart "0"; chrX rmsk exon 66224861 66225839 27771 - . gene_id "HARLEQUIN_Xq12"; transcript_id "HARLEQUIN_Xq12"; locus "HARLEQUIN_Xq12"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0183"; repClass "LTR"; repEnd "1082"; repFamily "ERV1"; repLeft "2"; repStart "-5814"; chrX rmsk exon 66225840 66226301 3757 - . gene_id "HARLEQUIN_Xq12"; transcript_id "HARLEQUIN_Xq12"; locus "HARLEQUIN_Xq12"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0183"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVW_Xq12 ### chrX rmsk gene 66297178 66299443 . - . gene_id "HERVW_Xq12"; transcript_id "HERVW_Xq12"; locus "HERVW_Xq12"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0308"; model_cov "2041"; model_pct "23.7"; chrX rmsk exon 66297178 66297402 1657 - . gene_id "HERVW_Xq12"; transcript_id "HERVW_Xq12"; locus "HERVW_Xq12"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0308"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "1"; repStart "-530"; chrX rmsk exon 66297406 66297693 2254 - . gene_id "HERVW_Xq12"; transcript_id "HERVW_Xq12"; locus "HERVW_Xq12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0308"; repClass "LTR"; repEnd "8622"; repFamily "ERV1"; repLeft "8335"; repStart "-4"; chrX rmsk exon 66297684 66297722 290 - . gene_id "HERVW_Xq12"; transcript_id "HERVW_Xq12"; locus "HERVW_Xq12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0308"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chrX rmsk exon 66297717 66299443 14147 - . gene_id "HERVW_Xq12"; transcript_id "HERVW_Xq12"; locus "HERVW_Xq12"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0308"; repClass "LTR"; repEnd "6018"; repFamily "ERV1"; repLeft "4302"; repStart "-2608"; ### MER4B_Xq12a ### chrX rmsk gene 66366844 66367954 . - . gene_id "MER4B_Xq12a"; transcript_id "MER4B_Xq12a"; locus "MER4B_Xq12a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0497"; model_cov "1116"; model_pct "16.5"; chrX rmsk exon 66366844 66367954 6016 - . gene_id "MER4B_Xq12a"; transcript_id "MER4B_Xq12a"; locus "MER4B_Xq12a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0497"; repClass "LTR"; repEnd "4202"; repFamily "ERV1"; repLeft "3086"; repStart "-2556"; ### HERVL_Xq12a ### chrX rmsk gene 66392934 66396953 . + . gene_id "HERVL_Xq12a"; transcript_id "HERVL_Xq12a"; locus "HERVL_Xq12a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1295"; model_cov "3605"; model_pct "63.8"; chrX rmsk exon 66392934 66396504 24296 + . gene_id "HERVL_Xq12a"; transcript_id "HERVL_Xq12a"; locus "HERVL_Xq12a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1295"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2049"; chrX rmsk exon 66396505 66396953 2940 + . gene_id "HERVL_Xq12a"; transcript_id "HERVL_Xq12a"; locus "HERVL_Xq12a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1295"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HML2_Xq12 ### chrX rmsk gene 66464290 66466342 . - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0126"; model_cov "2058"; model_pct "27.3"; chrX rmsk exon 66464290 66466342 13660 - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0126"; repClass "LTR"; repEnd "5139"; repFamily "ERVK"; repLeft "3081"; repStart "-2397"; ### HERVL_Xq12b ### chrX rmsk gene 66479824 66487544 . - . gene_id "HERVL_Xq12b"; transcript_id "HERVL_Xq12b"; locus "HERVL_Xq12b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1296"; model_cov "5578"; model_pct "98.7"; chrX rmsk exon 66479824 66480268 3303 - . gene_id "HERVL_Xq12b"; transcript_id "HERVL_Xq12b"; locus "HERVL_Xq12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1296"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 66480269 66480535 1659 - . gene_id "HERVL_Xq12b"; transcript_id "HERVL_Xq12b"; locus "HERVL_Xq12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1296"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5381"; repStart "0"; chrX rmsk exon 66481811 66487079 36601 - . gene_id "HERVL_Xq12b"; transcript_id "HERVL_Xq12b"; locus "HERVL_Xq12b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1296"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "75"; repStart "-274"; chrX rmsk exon 66487149 66487544 2710 - . gene_id "HERVL_Xq12b"; transcript_id "HERVL_Xq12b"; locus "HERVL_Xq12b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1296"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "1"; repStart "-50"; ### HERVL_Xq12c ### chrX rmsk gene 66534193 66542102 . + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1297"; model_cov "5662"; model_pct "100.0"; chrX rmsk exon 66534193 66534585 2332 + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1297"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 66534626 66535542 6925 + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1297"; repClass "LTR"; repEnd "916"; repFamily "ERVL"; repLeft "-4738"; repStart "1"; chrX rmsk exon 66536637 66541304 35089 + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1297"; repClass "LTR"; repEnd "5584"; repFamily "ERVL"; repLeft "-70"; repStart "905"; chrX rmsk exon 66541636 66541712 35089 + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1297"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "5585"; chrX rmsk exon 66541713 66542102 2488 + . gene_id "HERVL_Xq12c"; transcript_id "HERVL_Xq12c"; locus "HERVL_Xq12c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1297"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; ### HERVL_Xq12d ### chrX rmsk gene 67002990 67006544 . - . gene_id "HERVL_Xq12d"; transcript_id "HERVL_Xq12d"; locus "HERVL_Xq12d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1298"; model_cov "3069"; model_pct "54.3"; chrX rmsk exon 67002990 67003548 1798 - . gene_id "HERVL_Xq12d"; transcript_id "HERVL_Xq12d"; locus "HERVL_Xq12d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1298"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; chrX rmsk exon 67003549 67004842 8714 - . gene_id "HERVL_Xq12d"; transcript_id "HERVL_Xq12d"; locus "HERVL_Xq12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1298"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4318"; repStart "0"; chrX rmsk exon 67004831 67006544 12140 - . gene_id "HERVL_Xq12d"; transcript_id "HERVL_Xq12d"; locus "HERVL_Xq12d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1298"; repClass "LTR"; repEnd "3129"; repFamily "ERVL"; repLeft "1396"; repStart "-2525"; ### ERVLB4_Xq12c ### chrX rmsk gene 67806406 67808426 . - . gene_id "ERVLB4_Xq12c"; transcript_id "ERVLB4_Xq12c"; locus "ERVLB4_Xq12c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1809"; model_cov "2091"; model_pct "36.6"; chrX rmsk exon 67806406 67808426 10635 - . gene_id "ERVLB4_Xq12c"; transcript_id "ERVLB4_Xq12c"; locus "ERVLB4_Xq12c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1809"; repClass "LTR"; repEnd "4457"; repFamily "ERVL"; repLeft "2366"; repStart "-1257"; ### MER4B_Xq12b ### chrX rmsk gene 67880747 67883929 . - . gene_id "MER4B_Xq12b"; transcript_id "MER4B_Xq12b"; locus "MER4B_Xq12b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0500"; model_cov "2112"; model_pct "31.3"; chrX rmsk exon 67880747 67881322 3160 - . gene_id "MER4B_Xq12b"; transcript_id "MER4B_Xq12b"; locus "MER4B_Xq12b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0500"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 67881907 67883681 13691 - . gene_id "MER4B_Xq12b"; transcript_id "MER4B_Xq12b"; locus "MER4B_Xq12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0500"; repClass "LTR"; repEnd "6727"; repFamily "ERV1"; repLeft "4862"; repStart "-31"; chrX rmsk exon 67883687 67883929 986 - . gene_id "MER4B_Xq12b"; transcript_id "MER4B_Xq12b"; locus "MER4B_Xq12b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0500"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "3939"; repStart "-2572"; ### MER4B_Xq12c ### chrX rmsk gene 67890094 67896324 . - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0501"; model_cov "3434"; model_pct "50.8"; chrX rmsk exon 67890094 67890478 3430 - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0501"; repClass "LTR"; repEnd "3954"; repFamily "ERV1"; repLeft "3574"; repStart "-2804"; chrX rmsk exon 67892801 67892949 3430 - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0501"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "3424"; repStart "-3185"; chrX rmsk exon 67892934 67893642 7486 - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0501"; repClass "LTR"; repEnd "3099"; repFamily "ERV1"; repLeft "2385"; repStart "-3659"; chrX rmsk exon 67893933 67894503 7486 - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0501"; repClass "LTR"; repEnd "2384"; repFamily "ERV1"; repLeft "1859"; repStart "-4374"; chrX rmsk exon 67894794 67896324 7486 - . gene_id "MER4B_Xq12c"; transcript_id "MER4B_Xq12c"; locus "MER4B_Xq12c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0501"; repClass "LTR"; repEnd "1858"; repFamily "ERV1"; repLeft "192"; repStart "-4900"; ### HERVH48_Xq13.1 ### chrX rmsk gene 69697035 69703830 . - . gene_id "HERVH48_Xq13.1"; transcript_id "HERVH48_Xq13.1"; locus "HERVH48_Xq13.1"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0054"; model_cov "6102"; model_pct "91.7"; chrX rmsk exon 69697035 69697422 2845 - . gene_id "HERVH48_Xq13.1"; transcript_id "HERVH48_Xq13.1"; locus "HERVH48_Xq13.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0054"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 69697423 69699381 14685 - . gene_id "HERVH48_Xq13.1"; transcript_id "HERVH48_Xq13.1"; locus "HERVH48_Xq13.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0054"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "4679"; repStart "0"; chrX rmsk exon 69699364 69703443 29352 - . gene_id "HERVH48_Xq13.1"; transcript_id "HERVH48_Xq13.1"; locus "HERVH48_Xq13.1"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0054"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "1"; repStart "-2526"; chrX rmsk exon 69703444 69703830 2870 - . gene_id "HERVH48_Xq13.1"; transcript_id "HERVH48_Xq13.1"; locus "HERVH48_Xq13.1"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0054"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq13.1 ### chrX rmsk gene 69865233 69871727 . - . gene_id "HERVL_Xq13.1"; transcript_id "HERVL_Xq13.1"; locus "HERVL_Xq13.1"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1299"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 69865233 69865691 2698 - . gene_id "HERVL_Xq13.1"; transcript_id "HERVL_Xq13.1"; locus "HERVL_Xq13.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1299"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 69865692 69871287 42987 - . gene_id "HERVL_Xq13.1"; transcript_id "HERVL_Xq13.1"; locus "HERVL_Xq13.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1299"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 69871288 69871727 2856 - . gene_id "HERVL_Xq13.1"; transcript_id "HERVL_Xq13.1"; locus "HERVL_Xq13.1"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1299"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER34B_Xq13.1 ### chrX rmsk gene 70107638 70109403 . - . gene_id "MER34B_Xq13.1"; transcript_id "MER34B_Xq13.1"; locus "MER34B_Xq13.1"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0282"; model_cov "758"; model_pct "14.2"; chrX rmsk exon 70107638 70108203 1860 - . gene_id "MER34B_Xq13.1"; transcript_id "MER34B_Xq13.1"; locus "MER34B_Xq13.1"; repName "MER34C2"; geneRegion "ltr"; locid "MER34B-int_0282"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "1"; repStart "-5"; chrX rmsk exon 70108296 70108485 3286 - . gene_id "MER34B_Xq13.1"; transcript_id "MER34B_Xq13.1"; locus "MER34B_Xq13.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0282"; repClass "LTR"; repEnd "5169"; repFamily "ERV1"; repLeft "4992"; repStart "-187"; chrX rmsk exon 70108811 70109403 3286 - . gene_id "MER34B_Xq13.1"; transcript_id "MER34B_Xq13.1"; locus "MER34B_Xq13.1"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0282"; repClass "LTR"; repEnd "4991"; repFamily "ERV1"; repLeft "4410"; repStart "-365"; ### HERVH_Xq13.1a ### chrX rmsk gene 71264380 71269610 . + . gene_id "HERVH_Xq13.1a"; transcript_id "HERVH_Xq13.1a"; locus "HERVH_Xq13.1a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1242"; model_cov "5017"; model_pct "65.0"; chrX rmsk exon 71264380 71264926 2808 + . gene_id "HERVH_Xq13.1a"; transcript_id "HERVH_Xq13.1a"; locus "HERVH_Xq13.1a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1242"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 71264927 71266887 17276 + . gene_id "HERVH_Xq13.1a"; transcript_id "HERVH_Xq13.1a"; locus "HERVH_Xq13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1242"; repClass "LTR"; repEnd "2299"; repFamily "ERV1"; repLeft "-5414"; repStart "1"; chrX rmsk exon 71267184 71268492 17276 + . gene_id "HERVH_Xq13.1a"; transcript_id "HERVH_Xq13.1a"; locus "HERVH_Xq13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1242"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "2300"; chrX rmsk exon 71268481 71269610 5922 + . gene_id "HERVH_Xq13.1a"; transcript_id "HERVH_Xq13.1a"; locus "HERVH_Xq13.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1242"; repClass "LTR"; repEnd "6291"; repFamily "ERV1"; repLeft "-1422"; repStart "4859"; ### HERVH_Xq13.1b ### chrX rmsk gene 71270272 71272831 . + . gene_id "HERVH_Xq13.1b"; transcript_id "HERVH_Xq13.1b"; locus "HERVH_Xq13.1b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1243"; model_cov "1718"; model_pct "22.3"; chrX rmsk exon 71270272 71271283 7355 + . gene_id "HERVH_Xq13.1b"; transcript_id "HERVH_Xq13.1b"; locus "HERVH_Xq13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1243"; repClass "LTR"; repEnd "5870"; repFamily "ERV1"; repLeft "-1843"; repStart "4853"; chrX rmsk exon 71271583 71271738 7355 + . gene_id "HERVH_Xq13.1b"; transcript_id "HERVH_Xq13.1b"; locus "HERVH_Xq13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1243"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5871"; chrX rmsk exon 71271732 71272291 3721 + . gene_id "HERVH_Xq13.1b"; transcript_id "HERVH_Xq13.1b"; locus "HERVH_Xq13.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1243"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chrX rmsk exon 71272292 71272831 2710 + . gene_id "HERVH_Xq13.1b"; transcript_id "HERVH_Xq13.1b"; locus "HERVH_Xq13.1b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1243"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_Xq13.1 ### chrX rmsk gene 71494658 71500000 . - . gene_id "HERV9_Xq13.1"; transcript_id "HERV9_Xq13.1"; locus "HERV9_Xq13.1"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0186"; model_cov "3980"; model_pct "47.2"; chrX rmsk exon 71494658 71495085 3415 - . gene_id "HERV9_Xq13.1"; transcript_id "HERV9_Xq13.1"; locus "HERV9_Xq13.1"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0186"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "1"; repStart "-231"; chrX rmsk exon 71495086 71495858 6347 - . gene_id "HERV9_Xq13.1"; transcript_id "HERV9_Xq13.1"; locus "HERV9_Xq13.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0186"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7664"; repStart "0"; chrX rmsk exon 71496686 71500000 27139 - . gene_id "HERV9_Xq13.1"; transcript_id "HERV9_Xq13.1"; locus "HERV9_Xq13.1"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0186"; repClass "LTR"; repEnd "4978"; repFamily "ERV1"; repLeft "1770"; repStart "-3458"; ### HML5_Xq13.1a ### chrX rmsk gene 71699973 71702474 . + . gene_id "HML5_Xq13.1a"; transcript_id "HML5_Xq13.1a"; locus "HML5_Xq13.1a"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0134"; model_cov "803"; model_pct "11.7"; chrX rmsk exon 71699973 71700040 265 + . gene_id "HML5_Xq13.1a"; transcript_id "HML5_Xq13.1a"; locus "HML5_Xq13.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0134"; repClass "LTR"; repEnd "3875"; repFamily "ERVK"; repLeft "-2962"; repStart "3808"; chrX rmsk exon 71700436 71700801 349 + . gene_id "HML5_Xq13.1a"; transcript_id "HML5_Xq13.1a"; locus "HML5_Xq13.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0134"; repClass "LTR"; repEnd "4502"; repFamily "ERVK"; repLeft "-2335"; repStart "4136"; chrX rmsk exon 71702105 71702474 580 + . gene_id "HML5_Xq13.1a"; transcript_id "HML5_Xq13.1a"; locus "HML5_Xq13.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0134"; repClass "LTR"; repEnd "6522"; repFamily "ERVK"; repLeft "-315"; repStart "6152"; ### HML5_Xq13.1b ### chrX rmsk gene 71779101 71781601 . - . gene_id "HML5_Xq13.1b"; transcript_id "HML5_Xq13.1b"; locus "HML5_Xq13.1b"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0135"; model_cov "820"; model_pct "12.0"; chrX rmsk exon 71779101 71779470 535 - . gene_id "HML5_Xq13.1b"; transcript_id "HML5_Xq13.1b"; locus "HML5_Xq13.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0135"; repClass "LTR"; repEnd "6522"; repFamily "ERVK"; repLeft "6152"; repStart "-315"; chrX rmsk exon 71780759 71781145 288 - . gene_id "HML5_Xq13.1b"; transcript_id "HML5_Xq13.1b"; locus "HML5_Xq13.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0135"; repClass "LTR"; repEnd "4381"; repFamily "ERVK"; repLeft "3998"; repStart "-2456"; chrX rmsk exon 71781534 71781601 271 - . gene_id "HML5_Xq13.1b"; transcript_id "HML5_Xq13.1b"; locus "HML5_Xq13.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0135"; repClass "LTR"; repEnd "3875"; repFamily "ERVK"; repLeft "3808"; repStart "-2962"; ### ERVLB4_Xq13.1 ### chrX rmsk gene 71892125 71894699 . - . gene_id "ERVLB4_Xq13.1"; transcript_id "ERVLB4_Xq13.1"; locus "ERVLB4_Xq13.1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1810"; model_cov "2453"; model_pct "42.9"; chrX rmsk exon 71892125 71893788 8998 - . gene_id "ERVLB4_Xq13.1"; transcript_id "ERVLB4_Xq13.1"; locus "ERVLB4_Xq13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1810"; repClass "LTR"; repEnd "4352"; repFamily "ERVL"; repLeft "2620"; repStart "-1362"; chrX rmsk exon 71893981 71894699 4073 - . gene_id "ERVLB4_Xq13.1"; transcript_id "ERVLB4_Xq13.1"; locus "ERVLB4_Xq13.1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1810"; repClass "LTR"; repEnd "2615"; repFamily "ERVL"; repLeft "1894"; repStart "-3099"; ### MER41_Xq13.1 ### chrX rmsk gene 71983693 71988929 . - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0588"; model_cov "3878"; model_pct "65.2"; chrX rmsk exon 71983693 71984066 2864 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0588"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "1"; repStart "-179"; chrX rmsk exon 71984067 71984817 17629 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0588"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5178"; repStart "-2"; chrX rmsk exon 71985122 71987063 17629 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0588"; repClass "LTR"; repEnd "5177"; repFamily "ERV1"; repLeft "3297"; repStart "-769"; chrX rmsk exon 71987233 71988039 3547 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0588"; repClass "LTR"; repEnd "3307"; repFamily "ERV1"; repLeft "2764"; repStart "-2639"; chrX rmsk exon 71988041 71988730 4413 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0588"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chrX rmsk exon 71988731 71988929 1260 - . gene_id "MER41_Xq13.1"; transcript_id "MER41_Xq13.1"; locus "MER41_Xq13.1"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0588"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "343"; repStart "0"; ### HERVFH19_Xq13.1 ### chrX rmsk gene 72220348 72230604 . + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; category "prototype"; intModel "HERVFH19-int"; locid "HERVFH19-int_0049"; model_cov "7227"; model_pct "93.6"; chrX rmsk exon 72220348 72220381 262 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "34"; repFamily "ERV1"; repLeft "-452"; repStart "1"; chrX rmsk exon 72220391 72220883 2629 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "7"; chrX rmsk exon 72220884 72222595 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "1703"; repFamily "ERV1"; repLeft "-6016"; repStart "1"; chrX rmsk exon 72222896 72223055 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "1855"; repFamily "ERV1"; repLeft "-5864"; repStart "1704"; chrX rmsk exon 72223357 72223404 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "1890"; repFamily "ERV1"; repLeft "-5829"; repStart "1856"; chrX rmsk exon 72223661 72223709 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "1941"; repFamily "ERV1"; repLeft "-5778"; repStart "1891"; chrX rmsk exon 72223767 72224476 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "2683"; repFamily "ERV1"; repLeft "-5036"; repStart "1942"; chrX rmsk exon 72224769 72227745 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "5662"; repFamily "ERV1"; repLeft "-2057"; repStart "2684"; chrX rmsk exon 72228335 72229908 51873 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "7234"; repFamily "ERV1"; repLeft "-485"; repStart "5663"; chrX rmsk exon 72230250 72230604 1964 + . gene_id "HERVFH19_Xq13.1"; transcript_id "HERVFH19_Xq13.1"; locus "HERVFH19_Xq13.1"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0049"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "131"; ### MER4_Xq13.1 ### chrX rmsk gene 72696375 72703208 . + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0848"; model_cov "4586"; model_pct "69.5"; chrX rmsk exon 72696375 72696800 2621 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0848"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 72696804 72697329 2792 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "579"; repFamily "ERV1"; repLeft "-6019"; repStart "1"; chrX rmsk exon 72697337 72697702 1326 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4230"; repStart "2087"; chrX rmsk exon 72697997 72698024 1326 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "2388"; repFamily "ERV1"; repLeft "-4210"; repStart "2369"; chrX rmsk exon 72698022 72698670 3568 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1803"; chrX rmsk exon 72698910 72699225 1714 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "3077"; repFamily "ERV1"; repLeft "-3521"; repStart "2737"; chrX rmsk exon 72699566 72701438 14770 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "5836"; repFamily "ERV1"; repLeft "-762"; repStart "3918"; chrX rmsk exon 72701729 72702166 14770 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "6291"; repFamily "ERV1"; repLeft "-307"; repStart "5837"; chrX rmsk exon 72702456 72702762 14770 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0848"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6292"; chrX rmsk exon 72702771 72703208 2592 + . gene_id "MER4_Xq13.1"; transcript_id "MER4_Xq13.1"; locus "MER4_Xq13.1"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0848"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVL_Xq13.2a ### chrX rmsk gene 73008575 73009293 . - . gene_id "ERVL_Xq13.2a"; transcript_id "ERVL_Xq13.2a"; locus "ERVL_Xq13.2a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0478"; model_cov "596"; model_pct "10.4"; chrX rmsk exon 73008575 73008705 661 - . gene_id "ERVL_Xq13.2a"; transcript_id "ERVL_Xq13.2a"; locus "ERVL_Xq13.2a"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0478"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "369"; repStart "0"; chrX rmsk exon 73008706 73009293 4185 - . gene_id "ERVL_Xq13.2a"; transcript_id "ERVL_Xq13.2a"; locus "ERVL_Xq13.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0478"; repClass "LTR"; repEnd "3614"; repFamily "ERVL"; repLeft "3018"; repStart "-2143"; ### ERVL_Xq13.2b ### chrX rmsk gene 73012064 73013510 . - . gene_id "ERVL_Xq13.2b"; transcript_id "ERVL_Xq13.2b"; locus "ERVL_Xq13.2b"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0479"; model_cov "1465"; model_pct "25.4"; chrX rmsk exon 73012064 73013510 8682 - . gene_id "ERVL_Xq13.2b"; transcript_id "ERVL_Xq13.2b"; locus "ERVL_Xq13.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0479"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "1562"; repStart "-2730"; ### PRIMA4_Xq13.2a ### chrX rmsk gene 73014626 73016726 . - . gene_id "PRIMA4_Xq13.2a"; transcript_id "PRIMA4_Xq13.2a"; locus "PRIMA4_Xq13.2a"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0243"; model_cov "2114"; model_pct "25.6"; chrX rmsk exon 73014626 73016726 5228 - . gene_id "PRIMA4_Xq13.2a"; transcript_id "PRIMA4_Xq13.2a"; locus "PRIMA4_Xq13.2a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0243"; repClass "LTR"; repEnd "8131"; repFamily "ERV1"; repLeft "6017"; repStart "-139"; ### PRIMA4_Xq13.2b ### chrX rmsk gene 73042441 73044914 . + . gene_id "PRIMA4_Xq13.2b"; transcript_id "PRIMA4_Xq13.2b"; locus "PRIMA4_Xq13.2b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0244"; model_cov "2502"; model_pct "30.3"; chrX rmsk exon 73042441 73044914 14376 + . gene_id "PRIMA4_Xq13.2b"; transcript_id "PRIMA4_Xq13.2b"; locus "PRIMA4_Xq13.2b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0244"; repClass "LTR"; repEnd "6008"; repFamily "ERV1"; repLeft "-2262"; repStart "3506"; ### HERVL_Xq13.2a ### chrX rmsk gene 73044920 73047422 . - . gene_id "HERVL_Xq13.2a"; transcript_id "HERVL_Xq13.2a"; locus "HERVL_Xq13.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1300"; model_cov "2007"; model_pct "35.5"; chrX rmsk exon 73044920 73045453 2892 - . gene_id "HERVL_Xq13.2a"; transcript_id "HERVL_Xq13.2a"; locus "HERVL_Xq13.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1300"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 73045454 73047422 36900 - . gene_id "HERVL_Xq13.2a"; transcript_id "HERVL_Xq13.2a"; locus "HERVL_Xq13.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1300"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3647"; repStart "0"; ### HERVL_Xq13.2b ### chrX rmsk gene 73047477 73050569 . - . gene_id "HERVL_Xq13.2b"; transcript_id "HERVL_Xq13.2b"; locus "HERVL_Xq13.2b"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1301"; model_cov "3155"; model_pct "55.8"; chrX rmsk exon 73047477 73050569 36900 - . gene_id "HERVL_Xq13.2b"; transcript_id "HERVL_Xq13.2b"; locus "HERVL_Xq13.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1301"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2499"; repStart "0"; ### HERVL_Xq13.2c ### chrX rmsk gene 73165454 73172117 . - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1302"; model_cov "5383"; model_pct "95.2"; chrX rmsk exon 73165454 73165847 2925 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "1"; repStart "-44"; chrX rmsk exon 73165848 73165902 323 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5600"; repStart "0"; chrX rmsk exon 73166118 73169645 25437 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "5607"; repFamily "ERVL"; repLeft "2083"; repStart "-47"; chrX rmsk exon 73169637 73170482 12996 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "1808"; repFamily "ERVL"; repLeft "950"; repStart "-3846"; chrX rmsk exon 73170739 73171674 12996 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "949"; repFamily "ERVL"; repLeft "2"; repStart "-4705"; chrX rmsk exon 73171675 73172117 3461 - . gene_id "HERVL_Xq13.2c"; transcript_id "HERVL_Xq13.2c"; locus "HERVL_Xq13.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1302"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### MER4_Xq13.2 ### chrX rmsk gene 73197461 73198308 . + . gene_id "MER4_Xq13.2"; transcript_id "MER4_Xq13.2"; locus "MER4_Xq13.2"; category "internal"; intModel "MER4-int"; locid "MER4-int_0849"; model_cov "923"; model_pct "14.0"; chrX rmsk exon 73197461 73198045 1156 + . gene_id "MER4_Xq13.2"; transcript_id "MER4_Xq13.2"; locus "MER4_Xq13.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0849"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-5751"; repStart "90"; chrX rmsk exon 73198132 73198308 621 + . gene_id "MER4_Xq13.2"; transcript_id "MER4_Xq13.2"; locus "MER4_Xq13.2"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0849"; repClass "LTR"; repEnd "1036"; repFamily "ERV1"; repLeft "-5562"; repStart "870"; ### MER61_Xq13.2 ### chrX rmsk gene 73253964 73256953 . - . gene_id "MER61_Xq13.2"; transcript_id "MER61_Xq13.2"; locus "MER61_Xq13.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0389"; model_cov "2651"; model_pct "50.8"; chrX rmsk exon 73253964 73254292 1600 - . gene_id "MER61_Xq13.2"; transcript_id "MER61_Xq13.2"; locus "MER61_Xq13.2"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0389"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 73254293 73256953 16804 - . gene_id "MER61_Xq13.2"; transcript_id "MER61_Xq13.2"; locus "MER61_Xq13.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0389"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2566"; repStart "0"; ### HERVI_Xq13.2 ### chrX rmsk gene 73256954 73264087 . - . gene_id "HERVI_Xq13.2"; transcript_id "HERVI_Xq13.2"; locus "HERVI_Xq13.2"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0041"; model_cov "6562"; model_pct "84.3"; chrX rmsk exon 73256954 73257191 3578 - . gene_id "HERVI_Xq13.2"; transcript_id "HERVI_Xq13.2"; locus "HERVI_Xq13.2"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0041"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "273"; repStart "0"; chrX rmsk exon 73257218 73257479 3578 - . gene_id "HERVI_Xq13.2"; transcript_id "HERVI_Xq13.2"; locus "HERVI_Xq13.2"; repName "LTR10D"; geneRegion "ltr"; locid "HERVI-int_0041"; repClass "LTR"; repEnd "272"; repFamily "ERV1"; repLeft "2"; repStart "-241"; chrX rmsk exon 73257495 73264087 33233 - . gene_id "HERVI_Xq13.2"; transcript_id "HERVI_Xq13.2"; locus "HERVI_Xq13.2"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0041"; repClass "LTR"; repEnd "7759"; repFamily "ERV1"; repLeft "1197"; repStart "-26"; ### HML3_Xq13.2a ### chrX rmsk gene 73318321 73323801 . - . gene_id "HML3_Xq13.2a"; transcript_id "HML3_Xq13.2a"; locus "HML3_Xq13.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0243"; model_cov "5220"; model_pct "86.7"; chrX rmsk exon 73318321 73318832 4133 - . gene_id "HML3_Xq13.2a"; transcript_id "HML3_Xq13.2a"; locus "HML3_Xq13.2a"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0243"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 73318833 73323801 24122 - . gene_id "HML3_Xq13.2a"; transcript_id "HML3_Xq13.2a"; locus "HML3_Xq13.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0243"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "801"; repStart "0"; ### HML3_Xq13.2b ### chrX rmsk gene 73323862 73325138 . - . gene_id "HML3_Xq13.2b"; transcript_id "HML3_Xq13.2b"; locus "HML3_Xq13.2b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0244"; model_cov "764"; model_pct "12.7"; chrX rmsk exon 73323862 73324588 24122 - . gene_id "HML3_Xq13.2b"; transcript_id "HML3_Xq13.2b"; locus "HML3_Xq13.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0244"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5257"; repStart "0"; chrX rmsk exon 73324625 73325138 4130 - . gene_id "HML3_Xq13.2b"; transcript_id "HML3_Xq13.2b"; locus "HML3_Xq13.2b"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0244"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_Xq13.2 ### chrX rmsk gene 73395585 73396459 . + . gene_id "ERVLE_Xq13.2"; transcript_id "ERVLE_Xq13.2"; locus "ERVLE_Xq13.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3676"; model_cov "896"; model_pct "15.8"; chrX rmsk exon 73395585 73396459 1985 + . gene_id "ERVLE_Xq13.2"; transcript_id "ERVLE_Xq13.2"; locus "ERVLE_Xq13.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3676"; repClass "LTR"; repEnd "904"; repFamily "ERVL"; repLeft "-4763"; repStart "8"; ### HERVH_Xq13.2a ### chrX rmsk gene 73527400 73533947 . + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1244"; model_cov "5432"; model_pct "70.4"; chrX rmsk exon 73527400 73527640 2075 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "283"; repFamily "ERV1"; repLeft "-167"; repStart "1"; chrX rmsk exon 73527957 73528123 2075 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "284"; chrX rmsk exon 73528126 73531076 14348 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 73531071 73531219 971 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "-4425"; repStart "3140"; chrX rmsk exon 73531226 73532765 5009 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "6189"; repFamily "ERV1"; repLeft "-1524"; repStart "4689"; chrX rmsk exon 73532765 73532955 1103 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4959"; chrX rmsk exon 73532957 73533171 1342 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 73533172 73533548 2450 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 73533549 73533947 2546 + . gene_id "HERVH_Xq13.2a"; transcript_id "HERVH_Xq13.2a"; locus "HERVH_Xq13.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1244"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_Xq13.2a ### chrX rmsk gene 73623568 73626174 . - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0589"; model_cov "2659"; model_pct "44.7"; chrX rmsk exon 73623568 73623769 1091 - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0589"; repClass "LTR"; repEnd "3505"; repFamily "ERV1"; repLeft "3300"; repStart "-2441"; chrX rmsk exon 73623757 73624372 3407 - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0589"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "2258"; repStart "-3000"; chrX rmsk exon 73624358 73624506 834 - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0589"; repClass "LTR"; repEnd "2006"; repFamily "ERV1"; repLeft "1846"; repStart "-3940"; chrX rmsk exon 73624495 73626026 7514 - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0589"; repClass "LTR"; repEnd "1607"; repFamily "ERV1"; repLeft "1"; repStart "-4339"; chrX rmsk exon 73626027 73626174 972 - . gene_id "MER41_Xq13.2a"; transcript_id "MER41_Xq13.2a"; locus "MER41_Xq13.2a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0589"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### HML5_Xq13.2 ### chrX rmsk gene 73658873 73666201 . - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0136"; model_cov "6222"; model_pct "91.0"; chrX rmsk exon 73658873 73659357 3134 - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0136"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 73659381 73659438 376 - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0136"; repClass "LTR"; repEnd "6829"; repFamily "ERVK"; repLeft "6774"; repStart "-8"; chrX rmsk exon 73659437 73661932 44420 - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0136"; repClass "LTR"; repEnd "6171"; repFamily "ERVK"; repLeft "3652"; repStart "-666"; chrX rmsk exon 73662049 73665711 44420 - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0136"; repClass "LTR"; repEnd "3651"; repFamily "ERVK"; repLeft "3"; repStart "-3186"; chrX rmsk exon 73665714 73666201 3249 - . gene_id "HML5_Xq13.2"; transcript_id "HML5_Xq13.2"; locus "HML5_Xq13.2"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0136"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER41_Xq13.2b ### chrX rmsk gene 73798891 73801155 . - . gene_id "MER41_Xq13.2b"; transcript_id "MER41_Xq13.2b"; locus "MER41_Xq13.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0590"; model_cov "1190"; model_pct "20.0"; chrX rmsk exon 73798891 73799338 2739 - . gene_id "MER41_Xq13.2b"; transcript_id "MER41_Xq13.2b"; locus "MER41_Xq13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0590"; repClass "LTR"; repEnd "3227"; repFamily "ERV1"; repLeft "2774"; repStart "-2719"; chrX rmsk exon 73799627 73800046 2247 - . gene_id "MER41_Xq13.2b"; transcript_id "MER41_Xq13.2b"; locus "MER41_Xq13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0590"; repClass "LTR"; repEnd "1722"; repFamily "ERV1"; repLeft "1608"; repStart "-4224"; chrX rmsk exon 73800035 73800741 3551 - . gene_id "MER41_Xq13.2b"; transcript_id "MER41_Xq13.2b"; locus "MER41_Xq13.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0590"; repClass "LTR"; repEnd "624"; repFamily "ERV1"; repLeft "1"; repStart "-5322"; chrX rmsk exon 73800829 73801155 2320 - . gene_id "MER41_Xq13.2b"; transcript_id "MER41_Xq13.2b"; locus "MER41_Xq13.2b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0590"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "229"; repStart "0"; ### HERVH_Xq13.2b ### chrX rmsk gene 73801458 73809385 . - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1245"; model_cov "6345"; model_pct "82.3"; chrX rmsk exon 73801458 73801820 2158 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 73801821 73802377 3466 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrX rmsk exon 73802371 73804628 12701 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "3811"; repStart "-1697"; chrX rmsk exon 73804628 73807129 15908 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "3586"; repFamily "ERV1"; repLeft "1129"; repStart "-4127"; chrX rmsk exon 73808198 73809018 15908 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "1128"; repFamily "ERV1"; repLeft "1"; repStart "-6585"; chrX rmsk exon 73809019 73809385 2337 - . gene_id "HERVH_Xq13.2b"; transcript_id "HERVH_Xq13.2b"; locus "HERVH_Xq13.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1245"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL74_Xq13.2a ### chrX rmsk gene 73869769 73872057 . - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0137"; model_cov "1366"; model_pct "24.0"; chrX rmsk exon 73869769 73870358 1704 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "5151"; repFamily "ERVL"; repLeft "4581"; repStart "-534"; chrX rmsk exon 73870339 73870492 950 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3918"; repStart "-1612"; chrX rmsk exon 73870496 73870654 865 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "3642"; repFamily "ERVL"; repLeft "3487"; repStart "-2043"; chrX rmsk exon 73870648 73870725 628 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "3337"; repFamily "ERVL"; repLeft "3263"; repStart "-2348"; chrX rmsk exon 73871036 73871088 628 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "3262"; repFamily "ERVL"; repLeft "3210"; repStart "-2423"; chrX rmsk exon 73871720 73871921 896 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "2466"; repFamily "ERVL"; repLeft "2239"; repStart "-3219"; chrX rmsk exon 73871924 73872057 784 - . gene_id "HERVL74_Xq13.2a"; transcript_id "HERVL74_Xq13.2a"; locus "HERVL74_Xq13.2a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0137"; repClass "LTR"; repEnd "2117"; repFamily "ERVL"; repLeft "1984"; repStart "-3568"; ### HERVL74_Xq13.2b ### chrX rmsk gene 74056900 74058912 . + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0138"; model_cov "1410"; model_pct "24.8"; chrX rmsk exon 74056900 74056924 4796 + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0138"; repClass "LTR"; repEnd "1150"; repFamily "ERVL"; repLeft "-4535"; repStart "1133"; chrX rmsk exon 74057200 74058003 4796 + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0138"; repClass "LTR"; repEnd "1954"; repFamily "ERVL"; repLeft "-3731"; repStart "1151"; chrX rmsk exon 74058304 74058461 4796 + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0138"; repClass "LTR"; repEnd "2110"; repFamily "ERVL"; repLeft "-3575"; repStart "1955"; chrX rmsk exon 74058470 74058816 1822 + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0138"; repClass "LTR"; repEnd "2592"; repFamily "ERVL"; repLeft "-3093"; repStart "2239"; chrX rmsk exon 74058830 74058912 556 + . gene_id "HERVL74_Xq13.2b"; transcript_id "HERVL74_Xq13.2b"; locus "HERVL74_Xq13.2b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0138"; repClass "LTR"; repEnd "5033"; repFamily "ERVL"; repLeft "-652"; repStart "4951"; ### HERVL74_Xq13.2c ### chrX rmsk gene 74059753 74062237 . + . gene_id "HERVL74_Xq13.2c"; transcript_id "HERVL74_Xq13.2c"; locus "HERVL74_Xq13.2c"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0139"; model_cov "1246"; model_pct "21.9"; chrX rmsk exon 74059753 74060303 2784 + . gene_id "HERVL74_Xq13.2c"; transcript_id "HERVL74_Xq13.2c"; locus "HERVL74_Xq13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0139"; repClass "LTR"; repEnd "2155"; repFamily "ERVL"; repLeft "-3530"; repStart "1624"; chrX rmsk exon 74060941 74061661 1942 + . gene_id "HERVL74_Xq13.2c"; transcript_id "HERVL74_Xq13.2c"; locus "HERVL74_Xq13.2c"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0139"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "-44"; repStart "4926"; chrX rmsk exon 74061688 74062237 3224 + . gene_id "HERVL74_Xq13.2c"; transcript_id "HERVL74_Xq13.2c"; locus "HERVL74_Xq13.2c"; repName "MER74A"; geneRegion "ltr"; locid "HERVL74-int_0139"; repClass "LTR"; repEnd "558"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_Xq13.2c ### chrX rmsk gene 74121599 74130519 . - . gene_id "HERVH_Xq13.2c"; transcript_id "HERVH_Xq13.2c"; locus "HERVH_Xq13.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1246"; model_cov "7711"; model_pct "100.0"; chrX rmsk exon 74121599 74121952 1618 - . gene_id "HERVH_Xq13.2c"; transcript_id "HERVH_Xq13.2c"; locus "HERVH_Xq13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1246"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "117"; repStart "0"; chrX rmsk exon 74121995 74126748 33694 - . gene_id "HERVH_Xq13.2c"; transcript_id "HERVH_Xq13.2c"; locus "HERVH_Xq13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1246"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3070"; repStart "0"; chrX rmsk exon 74127047 74130197 33694 - . gene_id "HERVH_Xq13.2c"; transcript_id "HERVH_Xq13.2c"; locus "HERVH_Xq13.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1246"; repClass "LTR"; repEnd "3069"; repFamily "ERV1"; repLeft "1"; repStart "-4644"; chrX rmsk exon 74130202 74130519 1632 - . gene_id "HERVH_Xq13.2c"; transcript_id "HERVH_Xq13.2c"; locus "HERVH_Xq13.2c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1246"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "127"; repStart "-4"; ### HUERSP3B_Xq13.2a ### chrX rmsk gene 74134510 74138519 . + . gene_id "HUERSP3B_Xq13.2a"; transcript_id "HUERSP3B_Xq13.2a"; locus "HUERSP3B_Xq13.2a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0142"; model_cov "3964"; model_pct "53.4"; chrX rmsk exon 74134510 74135624 4576 + . gene_id "HUERSP3B_Xq13.2a"; transcript_id "HUERSP3B_Xq13.2a"; locus "HUERSP3B_Xq13.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0142"; repClass "LTR"; repEnd "4731"; repFamily "ERV1"; repLeft "-2687"; repStart "3971"; chrX rmsk exon 74135628 74136846 9326 + . gene_id "HUERSP3B_Xq13.2a"; transcript_id "HUERSP3B_Xq13.2a"; locus "HUERSP3B_Xq13.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0142"; repClass "LTR"; repEnd "6684"; repFamily "ERV1"; repLeft "-734"; repStart "5461"; chrX rmsk exon 74136851 74137884 6134 + . gene_id "HUERSP3B_Xq13.2a"; transcript_id "HUERSP3B_Xq13.2a"; locus "HUERSP3B_Xq13.2a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0142"; repClass "LTR"; repEnd "7418"; repFamily "ERV1"; repLeft "0"; repStart "5437"; chrX rmsk exon 74137885 74138519 4829 + . gene_id "HUERSP3B_Xq13.2a"; transcript_id "HUERSP3B_Xq13.2a"; locus "HUERSP3B_Xq13.2a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0142"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML6_Xq13.2 ### chrX rmsk gene 74177999 74182492 . + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0101"; model_cov "3260"; model_pct "45.3"; chrX rmsk exon 74177999 74178494 3322 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "1056"; repFamily "ERVK"; repLeft "-6146"; repStart "559"; chrX rmsk exon 74178481 74178588 742 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "1058"; repFamily "ERVK"; repLeft "-6144"; repStart "951"; chrX rmsk exon 74178921 74179078 921 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "2854"; repFamily "ERVK"; repLeft "-4348"; repStart "2695"; chrX rmsk exon 74179498 74179577 560 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "3918"; repFamily "ERVK"; repLeft "-3284"; repStart "3839"; chrX rmsk exon 74179574 74179754 928 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "4117"; repFamily "ERVK"; repLeft "-3085"; repStart "3967"; chrX rmsk exon 74179751 74180188 2934 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "2855"; repFamily "ERVK"; repLeft "-4347"; repStart "2414"; chrX rmsk exon 74180192 74180380 1389 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "4266"; repFamily "ERVK"; repLeft "-2936"; repStart "4078"; chrX rmsk exon 74180380 74181040 4156 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "5308"; repFamily "ERVK"; repLeft "-1894"; repStart "4644"; chrX rmsk exon 74181044 74182015 7064 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "6225"; chrX rmsk exon 74182019 74182492 3724 + . gene_id "HML6_Xq13.2"; transcript_id "HML6_Xq13.2"; locus "HML6_Xq13.2"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0101"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP3B_Xq13.2b ### chrX rmsk gene 74253889 74260438 . + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0143"; model_cov "5890"; model_pct "79.4"; chrX rmsk exon 74253889 74254088 1289 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "445"; chrX rmsk exon 74254089 74254186 468 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "96"; repFamily "ERV1"; repLeft "-7322"; repStart "1"; chrX rmsk exon 74254190 74254325 794 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6859"; repStart "409"; chrX rmsk exon 74254334 74256146 13191 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "2912"; repFamily "ERV1"; repLeft "-4506"; repStart "747"; chrX rmsk exon 74256535 74257337 13191 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "3874"; repFamily "ERV1"; repLeft "-3544"; repStart "2913"; chrX rmsk exon 74257337 74259926 16796 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "7417"; repFamily "ERV1"; repLeft "-1"; repStart "4898"; chrX rmsk exon 74259928 74260438 3031 + . gene_id "HUERSP3B_Xq13.2b"; transcript_id "HUERSP3B_Xq13.2b"; locus "HUERSP3B_Xq13.2b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0143"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-84"; repStart "42"; ### ERVLB4_Xq13.2a ### chrX rmsk gene 74366048 74369045 . - . gene_id "ERVLB4_Xq13.2a"; transcript_id "ERVLB4_Xq13.2a"; locus "ERVLB4_Xq13.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1813"; model_cov "2839"; model_pct "49.7"; chrX rmsk exon 74366048 74366126 14153 - . gene_id "ERVLB4_Xq13.2a"; transcript_id "ERVLB4_Xq13.2a"; locus "ERVLB4_Xq13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1813"; repClass "LTR"; repEnd "3375"; repFamily "ERVL"; repLeft "3317"; repStart "-2339"; chrX rmsk exon 74366398 74369045 14153 - . gene_id "ERVLB4_Xq13.2a"; transcript_id "ERVLB4_Xq13.2a"; locus "ERVLB4_Xq13.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1813"; repClass "LTR"; repEnd "3316"; repFamily "ERVL"; repLeft "535"; repStart "-2398"; ### MER4B_Xq13.2 ### chrX rmsk gene 74484100 74491692 . - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0505"; model_cov "4473"; model_pct "66.2"; chrX rmsk exon 74484100 74484694 3057 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 74484695 74484934 4183 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6523"; repStart "0"; chrX rmsk exon 74485235 74485483 4183 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "6522"; repFamily "ERV1"; repLeft "6246"; repStart "-236"; chrX rmsk exon 74486288 74486481 4183 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "6245"; repFamily "ERV1"; repLeft "6042"; repStart "-513"; chrX rmsk exon 74487000 74487180 1058 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "4606"; repFamily "ERV1"; repLeft "4438"; repStart "-2152"; chrX rmsk exon 74487165 74487801 4183 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3432"; repStart "-2670"; chrX rmsk exon 74487807 74489956 8795 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "3090"; repFamily "ERV1"; repLeft "1227"; repStart "-3668"; chrX rmsk exon 74490010 74490228 1596 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "1151"; repFamily "ERV1"; repLeft "924"; repStart "-5607"; chrX rmsk exon 74490251 74491096 5453 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chrX rmsk exon 74491128 74491692 2986 - . gene_id "MER4B_Xq13.2"; transcript_id "MER4B_Xq13.2"; locus "MER4B_Xq13.2"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0505"; repClass "LTR"; repEnd "730"; repFamily "ERV1"; repLeft "157"; repStart "-36"; ### ERVLB4_Xq13.2b ### chrX rmsk gene 74678921 74684880 . + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1814"; model_cov "3970"; model_pct "69.5"; chrX rmsk exon 74678921 74679266 2188 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "-51"; repStart "1"; chrX rmsk exon 74679373 74679413 248 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "357"; chrX rmsk exon 74679416 74679558 889 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "147"; repFamily "ERVL"; repLeft "-5567"; repStart "3"; chrX rmsk exon 74679554 74680053 19923 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "2394"; repFamily "ERVL"; repLeft "-3320"; repStart "1902"; chrX rmsk exon 74680290 74683057 19923 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "5138"; repFamily "ERVL"; repLeft "-576"; repStart "2395"; chrX rmsk exon 74683180 74683409 19923 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "5347"; repFamily "ERVL"; repLeft "-367"; repStart "5139"; chrX rmsk exon 74683700 74684074 1184 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5329"; chrX rmsk exon 74684076 74684104 1765 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "-43"; repFamily "ERVL"; repLeft "-440"; repStart "-66"; chrX rmsk exon 74684413 74684880 1765 + . gene_id "ERVLB4_Xq13.2b"; transcript_id "ERVLB4_Xq13.2b"; locus "ERVLB4_Xq13.2b"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1814"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "-133"; ### MER41_Xq13.3a ### chrX rmsk gene 75116664 75122462 . + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0591"; model_cov "4494"; model_pct "75.6"; chrX rmsk exon 75116664 75117208 3671 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0591"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 75117209 75117915 4016 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0591"; repClass "LTR"; repEnd "635"; repFamily "ERV1"; repLeft "-5311"; repStart "1"; chrX rmsk exon 75117892 75120328 12194 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0591"; repClass "LTR"; repEnd "3050"; repFamily "ERV1"; repLeft "-2896"; repStart "296"; chrX rmsk exon 75120629 75121006 12194 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0591"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-736"; repStart "4836"; chrX rmsk exon 75121324 75122034 12194 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0591"; repClass "LTR"; repEnd "5943"; repFamily "ERV1"; repLeft "-3"; repStart "5211"; chrX rmsk exon 75122035 75122462 3038 + . gene_id "MER41_Xq13.3a"; transcript_id "MER41_Xq13.3a"; locus "MER41_Xq13.3a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0591"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "-126"; repStart "1"; ### LTR46_Xq13.3 ### chrX rmsk gene 75203449 75212180 . - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0023"; model_cov "6672"; model_pct "95.5"; chrX rmsk exon 75203449 75203481 2046 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "428"; repStart "0"; chrX rmsk exon 75203544 75203899 2046 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "2"; repStart "-33"; chrX rmsk exon 75203900 75204810 6371 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6073"; repStart "0"; chrX rmsk exon 75204808 75205088 35495 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "5824"; repFamily "ERV1"; repLeft "5552"; repStart "-1161"; chrX rmsk exon 75205414 75206672 35495 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "5551"; repFamily "ERV1"; repLeft "4301"; repStart "-1434"; chrX rmsk exon 75206964 75209369 35495 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "4300"; repFamily "ERV1"; repLeft "1906"; repStart "-2685"; chrX rmsk exon 75209673 75210908 35495 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "1905"; repFamily "ERV1"; repLeft "658"; repStart "-5080"; chrX rmsk exon 75211177 75211776 4381 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "1"; repStart "-6387"; chrX rmsk exon 75211777 75212180 2085 - . gene_id "LTR46_Xq13.3"; transcript_id "LTR46_Xq13.3"; locus "LTR46_Xq13.3"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0023"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_Xq13.3 ### chrX rmsk gene 75323194 75329861 . + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0245"; model_cov "5160"; model_pct "85.7"; chrX rmsk exon 75323194 75323703 4002 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 75323704 75324278 4451 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "-5441"; repStart "1"; chrX rmsk exon 75324277 75325144 11534 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "2308"; repFamily "ERVK"; repLeft "-3713"; repStart "1436"; chrX rmsk exon 75325170 75325721 11534 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "2852"; repFamily "ERVK"; repLeft "-3169"; repStart "2309"; chrX rmsk exon 75325909 75326117 11534 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "3061"; repFamily "ERVK"; repLeft "-2960"; repStart "2853"; chrX rmsk exon 75326408 75329359 11534 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "6020"; repFamily "ERVK"; repLeft "-1"; repStart "3062"; chrX rmsk exon 75329361 75329861 3943 + . gene_id "HML3_Xq13.3"; transcript_id "HML3_Xq13.3"; locus "HML3_Xq13.3"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0245"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### MER41_Xq13.3b ### chrX rmsk gene 75361643 75367270 . + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0592"; model_cov "4556"; model_pct "76.6"; chrX rmsk exon 75361643 75362255 3956 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0592"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 75362256 75363042 4735 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0592"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "-5138"; repStart "1"; chrX rmsk exon 75363038 75363728 3557 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0592"; repClass "LTR"; repEnd "1992"; repFamily "ERV1"; repLeft "-3954"; repStart "1187"; chrX rmsk exon 75363732 75364547 4385 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0592"; repClass "LTR"; repEnd "2038"; repFamily "ERV1"; repLeft "-3908"; repStart "1186"; chrX rmsk exon 75364550 75365179 3882 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0592"; repClass "LTR"; repEnd "3945"; repFamily "ERV1"; repLeft "-2001"; repStart "3308"; chrX rmsk exon 75365220 75366646 9254 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0592"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "4491"; chrX rmsk exon 75366647 75367270 4111 + . gene_id "MER41_Xq13.3b"; transcript_id "MER41_Xq13.3b"; locus "MER41_Xq13.3b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0592"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq13.3a ### chrX rmsk gene 75392070 75394166 . - . gene_id "HERVL_Xq13.3a"; transcript_id "HERVL_Xq13.3a"; locus "HERVL_Xq13.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1303"; model_cov "1226"; model_pct "21.7"; chrX rmsk exon 75392070 75392504 3304 - . gene_id "HERVL_Xq13.3a"; transcript_id "HERVL_Xq13.3a"; locus "HERVL_Xq13.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1303"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 75392505 75393308 5960 - . gene_id "HERVL_Xq13.3a"; transcript_id "HERVL_Xq13.3a"; locus "HERVL_Xq13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1303"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4857"; repStart "0"; chrX rmsk exon 75393299 75393727 3234 - . gene_id "HERVL_Xq13.3a"; transcript_id "HERVL_Xq13.3a"; locus "HERVL_Xq13.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1303"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "1"; repStart "-5224"; chrX rmsk exon 75393728 75394166 3071 - . gene_id "HERVL_Xq13.3a"; transcript_id "HERVL_Xq13.3a"; locus "HERVL_Xq13.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1303"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_Xq13.3 ### chrX rmsk gene 75444803 75449296 . + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1815"; model_cov "3176"; model_pct "55.6"; chrX rmsk exon 75444803 75445197 893 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "-2"; repStart "156"; chrX rmsk exon 75445202 75446480 6421 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "1361"; repFamily "ERVL"; repLeft "-4353"; repStart "21"; chrX rmsk exon 75446476 75446583 6779 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "4004"; repFamily "ERVL"; repLeft "-1710"; repStart "3899"; chrX rmsk exon 75446936 75447943 6779 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "5032"; repFamily "ERVL"; repLeft "-682"; repStart "4005"; chrX rmsk exon 75448075 75448769 4017 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5010"; chrX rmsk exon 75448770 75449201 2110 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-42"; repStart "1"; chrX rmsk exon 75449255 75449296 2110 + . gene_id "ERVLB4_Xq13.3"; transcript_id "ERVLB4_Xq13.3"; locus "ERVLB4_Xq13.3"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1815"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "479"; ### HERVL_Xq13.3b ### chrX rmsk gene 75470018 75474643 . + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1304"; model_cov "3692"; model_pct "65.3"; chrX rmsk exon 75470018 75470392 2430 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; chrX rmsk exon 75470399 75470480 632 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "290"; repFamily "ERVL"; repLeft "-5364"; repStart "209"; chrX rmsk exon 75470478 75471006 22268 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "2394"; repFamily "ERVL"; repLeft "-3260"; repStart "1851"; chrX rmsk exon 75471069 75473681 22268 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "5085"; repFamily "ERVL"; repLeft "-569"; repStart "2395"; chrX rmsk exon 75473677 75474049 2615 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5276"; chrX rmsk exon 75474050 75474448 2761 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chrX rmsk exon 75474534 75474573 320 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "-37"; repStart "377"; chrX rmsk exon 75474611 75474643 320 + . gene_id "HERVL_Xq13.3b"; transcript_id "HERVL_Xq13.3b"; locus "HERVL_Xq13.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1304"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "408"; ### HERVH_Xq13.3a ### chrX rmsk gene 75631547 75637730 . - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1247"; model_cov "5374"; model_pct "69.7"; chrX rmsk exon 75631547 75632012 3092 - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1247"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 75632186 75633245 5196 - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1247"; repClass "LTR"; repEnd "7554"; repFamily "ERV1"; repLeft "6489"; repStart "-159"; chrX rmsk exon 75633246 75634024 3656 - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1247"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "3806"; repStart "-3184"; chrX rmsk exon 75634019 75637281 15422 - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1247"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "1"; repStart "-4126"; chrX rmsk exon 75637282 75637730 3039 - . gene_id "HERVH_Xq13.3a"; transcript_id "HERVH_Xq13.3a"; locus "HERVH_Xq13.3a"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1247"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_Xq13.3 ### chrX rmsk gene 75642621 75648589 . - . gene_id "HARLEQUIN_Xq13.3"; transcript_id "HARLEQUIN_Xq13.3"; locus "HARLEQUIN_Xq13.3"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0184"; model_cov "5495"; model_pct "79.7"; chrX rmsk exon 75642621 75643095 3019 - . gene_id "HARLEQUIN_Xq13.3"; transcript_id "HARLEQUIN_Xq13.3"; locus "HARLEQUIN_Xq13.3"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0184"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 75643096 75648589 39011 - . gene_id "HARLEQUIN_Xq13.3"; transcript_id "HARLEQUIN_Xq13.3"; locus "HARLEQUIN_Xq13.3"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0184"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1401"; repStart "0"; ### HERVH_Xq13.3b ### chrX rmsk gene 75855966 75859573 . - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1248"; model_cov "3121"; model_pct "40.5"; chrX rmsk exon 75855966 75856418 2656 - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1248"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 75856431 75856971 3022 - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1248"; repClass "LTR"; repEnd "7701"; repFamily "ERV1"; repLeft "7157"; repStart "-12"; chrX rmsk exon 75856965 75858673 10238 - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1248"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "4306"; repStart "-1697"; chrX rmsk exon 75858675 75859148 2474 - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1248"; repClass "LTR"; repEnd "1278"; repFamily "ERV1"; repLeft "802"; repStart "-6435"; chrX rmsk exon 75859210 75859573 1422 - . gene_id "HERVH_Xq13.3b"; transcript_id "HERVH_Xq13.3b"; locus "HERVH_Xq13.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1248"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "68"; repStart "-7254"; ### HERVP71A_Xq13.3 ### chrX rmsk gene 75892105 75894001 . - . gene_id "HERVP71A_Xq13.3"; transcript_id "HERVP71A_Xq13.3"; locus "HERVP71A_Xq13.3"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0074"; model_cov "1780"; model_pct "23.5"; chrX rmsk exon 75892105 75893877 9308 - . gene_id "HERVP71A_Xq13.3"; transcript_id "HERVP71A_Xq13.3"; locus "HERVP71A_Xq13.3"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0074"; repClass "LTR"; repEnd "1781"; repFamily "ERV1"; repLeft "1"; repStart "-5809"; chrX rmsk exon 75893884 75894001 739 - . gene_id "HERVP71A_Xq13.3"; transcript_id "HERVP71A_Xq13.3"; locus "HERVP71A_Xq13.3"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0074"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "488"; repStart "-4"; ### HERVW_Xq13.3 ### chrX rmsk gene 75898297 75905073 . - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0309"; model_cov "5774"; model_pct "66.9"; chrX rmsk exon 75898297 75898608 2454 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "1"; repStart "-468"; chrX rmsk exon 75898609 75898897 2097 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8338"; repStart "0"; chrX rmsk exon 75898916 75902500 27961 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "2430"; repStart "-2607"; chrX rmsk exon 75902486 75903689 8673 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "800"; repStart "-6612"; chrX rmsk exon 75903868 75904563 4972 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "684"; repFamily "ERV1"; repLeft "1"; repStart "-7942"; chrX rmsk exon 75904578 75905073 3248 - . gene_id "HERVW_Xq13.3"; transcript_id "HERVW_Xq13.3"; locus "HERVW_Xq13.3"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0309"; repClass "LTR"; repEnd "773"; repFamily "ERV1"; repLeft "257"; repStart "-7"; ### HERVL_Xq13.3c ### chrX rmsk gene 75908412 75909983 . + . gene_id "HERVL_Xq13.3c"; transcript_id "HERVL_Xq13.3c"; locus "HERVL_Xq13.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1305"; model_cov "910"; model_pct "16.1"; chrX rmsk exon 75908412 75908769 2800 + . gene_id "HERVL_Xq13.3c"; transcript_id "HERVL_Xq13.3c"; locus "HERVL_Xq13.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1305"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "-80"; repStart "1"; chrX rmsk exon 75908806 75908845 2800 + . gene_id "HERVL_Xq13.3c"; transcript_id "HERVL_Xq13.3c"; locus "HERVL_Xq13.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1305"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "365"; chrX rmsk exon 75908846 75909748 6648 + . gene_id "HERVL_Xq13.3c"; transcript_id "HERVL_Xq13.3c"; locus "HERVL_Xq13.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1305"; repClass "LTR"; repEnd "911"; repFamily "ERVL"; repLeft "-4743"; repStart "1"; chrX rmsk exon 75909754 75909983 1534 + . gene_id "HERVL_Xq13.3c"; transcript_id "HERVL_Xq13.3c"; locus "HERVL_Xq13.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1305"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-114"; repStart "100"; ### HERVH48_Xq13.3 ### chrX rmsk gene 75963659 75969847 . - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; category "prototype"; intModel "HERVH48-int"; locid "HERVH48-int_0055"; model_cov "5340"; model_pct "80.3"; chrX rmsk exon 75963659 75964105 2934 - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0055"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 75964106 75964499 2764 - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0055"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "6260"; repStart "0"; chrX rmsk exon 75964498 75968551 23618 - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0055"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "1186"; repStart "-1395"; chrX rmsk exon 75968542 75969401 5147 - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0055"; repClass "LTR"; repEnd "874"; repFamily "ERV1"; repLeft "1"; repStart "-5780"; chrX rmsk exon 75969402 75969847 2790 - . gene_id "HERVH48_Xq13.3"; transcript_id "HERVH48_Xq13.3"; locus "HERVH48_Xq13.3"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0055"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### MER4B_Xq13.3 ### chrX rmsk gene 76146255 76148830 . - . gene_id "MER4B_Xq13.3"; transcript_id "MER4B_Xq13.3"; locus "MER4B_Xq13.3"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0506"; model_cov "1711"; model_pct "25.3"; chrX rmsk exon 76146255 76146619 1548 - . gene_id "MER4B_Xq13.3"; transcript_id "MER4B_Xq13.3"; locus "MER4B_Xq13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0506"; repClass "LTR"; repEnd "1912"; repFamily "ERV1"; repLeft "1499"; repStart "-4846"; chrX rmsk exon 76147006 76147257 5431 - . gene_id "MER4B_Xq13.3"; transcript_id "MER4B_Xq13.3"; locus "MER4B_Xq13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0506"; repClass "LTR"; repEnd "1498"; repFamily "ERV1"; repLeft "1154"; repStart "-5260"; chrX rmsk exon 76147949 76148830 5431 - . gene_id "MER4B_Xq13.3"; transcript_id "MER4B_Xq13.3"; locus "MER4B_Xq13.3"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0506"; repClass "LTR"; repEnd "1153"; repFamily "ERV1"; repLeft "199"; repStart "-5605"; ### HERVFRD_Xq13.3 ### chrX rmsk gene 76249208 76254661 . - . gene_id "HERVFRD_Xq13.3"; transcript_id "HERVFRD_Xq13.3"; locus "HERVFRD_Xq13.3"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0194"; model_cov "3045"; model_pct "42.3"; chrX rmsk exon 76249208 76249941 2993 - . gene_id "HERVFRD_Xq13.3"; transcript_id "HERVFRD_Xq13.3"; locus "HERVFRD_Xq13.3"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0194"; repClass "LTR"; repEnd "782"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 76249942 76251102 6038 - . gene_id "HERVFRD_Xq13.3"; transcript_id "HERVFRD_Xq13.3"; locus "HERVFRD_Xq13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0194"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "6087"; repStart "-9"; chrX rmsk exon 76252415 76252936 751 - . gene_id "HERVFRD_Xq13.3"; transcript_id "HERVFRD_Xq13.3"; locus "HERVFRD_Xq13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0194"; repClass "LTR"; repEnd "5330"; repFamily "ERV1"; repLeft "4812"; repStart "-1875"; chrX rmsk exon 76253688 76254661 524 - . gene_id "HERVFRD_Xq13.3"; transcript_id "HERVFRD_Xq13.3"; locus "HERVFRD_Xq13.3"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0194"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1866"; repStart "-3921"; ### HERVL_Xq13.3d ### chrX rmsk gene 76511855 76518412 . + . gene_id "HERVL_Xq13.3d"; transcript_id "HERVL_Xq13.3d"; locus "HERVL_Xq13.3d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1306"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 76511855 76512302 3035 + . gene_id "HERVL_Xq13.3d"; transcript_id "HERVL_Xq13.3d"; locus "HERVL_Xq13.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1306"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 76512303 76517961 38755 + . gene_id "HERVL_Xq13.3d"; transcript_id "HERVL_Xq13.3d"; locus "HERVL_Xq13.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1306"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 76517962 76518412 3312 + . gene_id "HERVL_Xq13.3d"; transcript_id "HERVL_Xq13.3d"; locus "HERVL_Xq13.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1306"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP3_Xq13.3a ### chrX rmsk gene 76538297 76542584 . - . gene_id "HUERSP3_Xq13.3a"; transcript_id "HUERSP3_Xq13.3a"; locus "HUERSP3_Xq13.3a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0224"; model_cov "3603"; model_pct "40.4"; chrX rmsk exon 76538297 76538941 2254 - . gene_id "HUERSP3_Xq13.3a"; transcript_id "HUERSP3_Xq13.3a"; locus "HUERSP3_Xq13.3a"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0224"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 76538942 76541490 17411 - . gene_id "HUERSP3_Xq13.3a"; transcript_id "HUERSP3_Xq13.3a"; locus "HUERSP3_Xq13.3a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0224"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "6366"; repStart "0"; chrX rmsk exon 76541543 76542584 6913 - . gene_id "HUERSP3_Xq13.3a"; transcript_id "HUERSP3_Xq13.3a"; locus "HUERSP3_Xq13.3a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0224"; repClass "LTR"; repEnd "6275"; repFamily "ERV1"; repLeft "5225"; repStart "-2644"; ### HUERSP3_Xq13.3b ### chrX rmsk gene 76550871 76557432 . - . gene_id "HUERSP3_Xq13.3b"; transcript_id "HUERSP3_Xq13.3b"; locus "HUERSP3_Xq13.3b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0225"; model_cov "5230"; model_pct "58.6"; chrX rmsk exon 76550871 76551438 28414 - . gene_id "HUERSP3_Xq13.3b"; transcript_id "HUERSP3_Xq13.3b"; locus "HUERSP3_Xq13.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0225"; repClass "LTR"; repEnd "5233"; repFamily "ERV1"; repLeft "4704"; repStart "-3686"; chrX rmsk exon 76551782 76554435 28414 - . gene_id "HUERSP3_Xq13.3b"; transcript_id "HUERSP3_Xq13.3b"; locus "HUERSP3_Xq13.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0225"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "2065"; repStart "-4216"; chrX rmsk exon 76554744 76556750 28414 - . gene_id "HUERSP3_Xq13.3b"; transcript_id "HUERSP3_Xq13.3b"; locus "HUERSP3_Xq13.3b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0225"; repClass "LTR"; repEnd "2064"; repFamily "ERV1"; repLeft "1"; repStart "-6855"; chrX rmsk exon 76556821 76557432 2494 - . gene_id "HUERSP3_Xq13.3b"; transcript_id "HUERSP3_Xq13.3b"; locus "HUERSP3_Xq13.3b"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0225"; repClass "LTR"; repEnd "614"; repFamily "ERV1"; repLeft "1"; repStart "-31"; ### HERVL18_Xq13.3 ### chrX rmsk gene 76796466 76803137 . + . gene_id "HERVL18_Xq13.3"; transcript_id "HERVL18_Xq13.3"; locus "HERVL18_Xq13.3"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0146"; model_cov "6043"; model_pct "99.9"; chrX rmsk exon 76796466 76796779 1907 + . gene_id "HERVL18_Xq13.3"; transcript_id "HERVL18_Xq13.3"; locus "HERVL18_Xq13.3"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0146"; repClass "LTR"; repEnd "337"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chrX rmsk exon 76796789 76802818 40166 + . gene_id "HERVL18_Xq13.3"; transcript_id "HERVL18_Xq13.3"; locus "HERVL18_Xq13.3"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0146"; repClass "LTR"; repEnd "6045"; repFamily "ERVL"; repLeft "-2"; repStart "2"; chrX rmsk exon 76802822 76803137 1947 + . gene_id "HERVL18_Xq13.3"; transcript_id "HERVL18_Xq13.3"; locus "HERVL18_Xq13.3"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0146"; repClass "LTR"; repEnd "331"; repFamily "ERVL"; repLeft "-14"; repStart "1"; ### HERVP71A_Xq21.1a ### chrX rmsk gene 77067946 77070233 . + . gene_id "HERVP71A_Xq21.1a"; transcript_id "HERVP71A_Xq21.1a"; locus "HERVP71A_Xq21.1a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0075"; model_cov "1780"; model_pct "23.5"; chrX rmsk exon 77067946 77068554 4846 + . gene_id "HERVP71A_Xq21.1a"; transcript_id "HERVP71A_Xq21.1a"; locus "HERVP71A_Xq21.1a"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0075"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 77068555 77070233 8601 + . gene_id "HERVP71A_Xq21.1a"; transcript_id "HERVP71A_Xq21.1a"; locus "HERVP71A_Xq21.1a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0075"; repClass "LTR"; repEnd "1782"; repFamily "ERV1"; repLeft "-5808"; repStart "2"; ### HML3_Xq21.1a ### chrX rmsk gene 77077638 77081927 . + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0246"; model_cov "3076"; model_pct "51.1"; chrX rmsk exon 77077638 77078135 4300 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 77078136 77078268 3275 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "131"; repFamily "ERVK"; repLeft "-5890"; repStart "1"; chrX rmsk exon 77078538 77078957 3275 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "132"; chrX rmsk exon 77078958 77079879 7477 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "2204"; repFamily "ERVK"; repLeft "-3817"; repStart "1280"; chrX rmsk exon 77079875 77081412 12315 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4471"; chrX rmsk exon 77081413 77081927 4440 + . gene_id "HML3_Xq21.1a"; transcript_id "HML3_Xq21.1a"; locus "HML3_Xq21.1a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0246"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVP71A_Xq21.1b ### chrX rmsk gene 77082594 77086675 . + . gene_id "HERVP71A_Xq21.1b"; transcript_id "HERVP71A_Xq21.1b"; locus "HERVP71A_Xq21.1b"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0076"; model_cov "3146"; model_pct "41.4"; chrX rmsk exon 77082594 77084104 17319 + . gene_id "HERVP71A_Xq21.1b"; transcript_id "HERVP71A_Xq21.1b"; locus "HERVP71A_Xq21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0076"; repClass "LTR"; repEnd "5252"; repFamily "ERV1"; repLeft "-2338"; repStart "3751"; chrX rmsk exon 77084394 77086011 17319 + . gene_id "HERVP71A_Xq21.1b"; transcript_id "HERVP71A_Xq21.1b"; locus "HERVP71A_Xq21.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0076"; repClass "LTR"; repEnd "6898"; repFamily "ERV1"; repLeft "-692"; repStart "5253"; chrX rmsk exon 77086081 77086675 4789 + . gene_id "HERVP71A_Xq21.1b"; transcript_id "HERVP71A_Xq21.1b"; locus "HERVP71A_Xq21.1b"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0076"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq21.1a ### chrX rmsk gene 77121724 77128577 . + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1307"; model_cov "5418"; model_pct "95.8"; chrX rmsk exon 77121724 77121895 968 + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1307"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "233"; chrX rmsk exon 77122138 77123925 36036 + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1307"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "233"; chrX rmsk exon 77124441 77125106 36036 + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1307"; repClass "LTR"; repEnd "2712"; repFamily "ERVL"; repLeft "-2942"; repStart "2029"; chrX rmsk exon 77125258 77128115 36036 + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1307"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "2713"; chrX rmsk exon 77128117 77128577 2832 + . gene_id "HERVL_Xq21.1a"; transcript_id "HERVL_Xq21.1a"; locus "HERVL_Xq21.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1307"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVEA_Xq21.1 ### chrX rmsk gene 77293580 77302601 . + . gene_id "HERVEA_Xq21.1"; transcript_id "HERVEA_Xq21.1"; locus "HERVEA_Xq21.1"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0108"; model_cov "7845"; model_pct "100.0"; chrX rmsk exon 77293580 77294040 2583 + . gene_id "HERVEA_Xq21.1"; transcript_id "HERVEA_Xq21.1"; locus "HERVEA_Xq21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0108"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-1"; repStart "3"; chrX rmsk exon 77294042 77296022 49183 + . gene_id "HERVEA_Xq21.1"; transcript_id "HERVEA_Xq21.1"; locus "HERVEA_Xq21.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0108"; repClass "LTR"; repEnd "2020"; repFamily "ERV1"; repLeft "-5827"; repStart "1"; chrX rmsk exon 77296282 77302138 49183 + . gene_id "HERVEA_Xq21.1"; transcript_id "HERVEA_Xq21.1"; locus "HERVEA_Xq21.1"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0108"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "2021"; chrX rmsk exon 77302140 77302601 2562 + . gene_id "HERVEA_Xq21.1"; transcript_id "HERVEA_Xq21.1"; locus "HERVEA_Xq21.1"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0108"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### PRIMA41_Xq21.1 ### chrX rmsk gene 77818565 77820237 . - . gene_id "PRIMA41_Xq21.1"; transcript_id "PRIMA41_Xq21.1"; locus "PRIMA41_Xq21.1"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0171"; model_cov "1436"; model_pct "18.5"; chrX rmsk exon 77818565 77818825 2150 - . gene_id "PRIMA41_Xq21.1"; transcript_id "PRIMA41_Xq21.1"; locus "PRIMA41_Xq21.1"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0171"; repClass "LTR"; repEnd "261"; repFamily "ERV1"; repLeft "1"; repStart "-260"; chrX rmsk exon 77818826 77819371 4341 - . gene_id "PRIMA41_Xq21.1"; transcript_id "PRIMA41_Xq21.1"; locus "PRIMA41_Xq21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0171"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "7199"; repStart "0"; chrX rmsk exon 77819363 77820237 6930 - . gene_id "PRIMA41_Xq21.1"; transcript_id "PRIMA41_Xq21.1"; locus "PRIMA41_Xq21.1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0171"; repClass "LTR"; repEnd "6395"; repFamily "ERV1"; repLeft "5516"; repStart "-1361"; ### HERVL_Xq21.1b ### chrX rmsk gene 78173622 78175909 . - . gene_id "HERVL_Xq21.1b"; transcript_id "HERVL_Xq21.1b"; locus "HERVL_Xq21.1b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1308"; model_cov "1707"; model_pct "30.2"; chrX rmsk exon 78173622 78175308 13127 - . gene_id "HERVL_Xq21.1b"; transcript_id "HERVL_Xq21.1b"; locus "HERVL_Xq21.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1308"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "1"; repStart "-3946"; chrX rmsk exon 78175309 78175348 3144 - . gene_id "HERVL_Xq21.1b"; transcript_id "HERVL_Xq21.1b"; locus "HERVL_Xq21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1308"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "414"; repStart "0"; chrX rmsk exon 78175519 78175909 3144 - . gene_id "HERVL_Xq21.1b"; transcript_id "HERVL_Xq21.1b"; locus "HERVL_Xq21.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1308"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "2"; repStart "-40"; ### HML5_Xq21.1a ### chrX rmsk gene 78213293 78218133 . - . gene_id "HML5_Xq21.1a"; transcript_id "HML5_Xq21.1a"; locus "HML5_Xq21.1a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0137"; model_cov "4059"; model_pct "59.4"; chrX rmsk exon 78213293 78213740 2375 - . gene_id "HML5_Xq21.1a"; transcript_id "HML5_Xq21.1a"; locus "HML5_Xq21.1a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0137"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 78213741 78217156 23585 - . gene_id "HML5_Xq21.1a"; transcript_id "HML5_Xq21.1a"; locus "HML5_Xq21.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0137"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "2068"; repStart "-1502"; chrX rmsk exon 78217154 78217921 4973 - . gene_id "HML5_Xq21.1a"; transcript_id "HML5_Xq21.1a"; locus "HML5_Xq21.1a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0137"; repClass "LTR"; repEnd "793"; repFamily "ERVK"; repLeft "1"; repStart "-6044"; chrX rmsk exon 78217922 78218133 1114 - . gene_id "HML5_Xq21.1a"; transcript_id "HML5_Xq21.1a"; locus "HML5_Xq21.1a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0137"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "234"; repStart "0"; ### HERVW_Xq21.1a ### chrX rmsk gene 78346606 78350527 . - . gene_id "HERVW_Xq21.1a"; transcript_id "HERVW_Xq21.1a"; locus "HERVW_Xq21.1a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0310"; model_cov "3261"; model_pct "37.8"; chrX rmsk exon 78346606 78347963 11168 - . gene_id "HERVW_Xq21.1a"; transcript_id "HERVW_Xq21.1a"; locus "HERVW_Xq21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0310"; repClass "LTR"; repEnd "3792"; repFamily "ERV1"; repLeft "2430"; repStart "-4834"; chrX rmsk exon 78347949 78349146 9007 - . gene_id "HERVW_Xq21.1a"; transcript_id "HERVW_Xq21.1a"; locus "HERVW_Xq21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0310"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "798"; repStart "-6612"; chrX rmsk exon 78349313 78350008 5328 - . gene_id "HERVW_Xq21.1a"; transcript_id "HERVW_Xq21.1a"; locus "HERVW_Xq21.1a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0310"; repClass "LTR"; repEnd "684"; repFamily "ERV1"; repLeft "1"; repStart "-7942"; chrX rmsk exon 78350009 78350527 3476 - . gene_id "HERVW_Xq21.1a"; transcript_id "HERVW_Xq21.1a"; locus "HERVW_Xq21.1a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0310"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "247"; repStart "0"; ### HUERSP1_Xq21.1a ### chrX rmsk gene 78441955 78443095 . - . gene_id "HUERSP1_Xq21.1a"; transcript_id "HUERSP1_Xq21.1a"; locus "HUERSP1_Xq21.1a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0221"; model_cov "974"; model_pct "15.6"; chrX rmsk exon 78441955 78442560 2259 - . gene_id "HUERSP1_Xq21.1a"; transcript_id "HUERSP1_Xq21.1a"; locus "HUERSP1_Xq21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0221"; repClass "LTR"; repEnd "1197"; repFamily "ERV1"; repLeft "609"; repStart "-5066"; chrX rmsk exon 78442660 78442948 850 - . gene_id "HUERSP1_Xq21.1a"; transcript_id "HUERSP1_Xq21.1a"; locus "HUERSP1_Xq21.1a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0221"; repClass "LTR"; repEnd "387"; repFamily "ERV1"; repLeft "1"; repStart "-5876"; chrX rmsk exon 78442949 78443095 778 - . gene_id "HUERSP1_Xq21.1a"; transcript_id "HUERSP1_Xq21.1a"; locus "HUERSP1_Xq21.1a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0221"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "546"; repStart "0"; ### ERVLB4_Xq21.1a ### chrX rmsk gene 78526210 78531215 . + . gene_id "ERVLB4_Xq21.1a"; transcript_id "ERVLB4_Xq21.1a"; locus "ERVLB4_Xq21.1a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1818"; model_cov "4726"; model_pct "82.7"; chrX rmsk exon 78526210 78527206 4389 + . gene_id "ERVLB4_Xq21.1a"; transcript_id "ERVLB4_Xq21.1a"; locus "ERVLB4_Xq21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1818"; repClass "LTR"; repEnd "1053"; repFamily "ERVL"; repLeft "-4661"; repStart "1"; chrX rmsk exon 78527208 78530297 19183 + . gene_id "ERVLB4_Xq21.1a"; transcript_id "ERVLB4_Xq21.1a"; locus "ERVLB4_Xq21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1818"; repClass "LTR"; repEnd "4366"; repFamily "ERVL"; repLeft "-1348"; repStart "1233"; chrX rmsk exon 78530677 78531151 19183 + . gene_id "ERVLB4_Xq21.1a"; transcript_id "ERVLB4_Xq21.1a"; locus "ERVLB4_Xq21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1818"; repClass "LTR"; repEnd "4842"; repFamily "ERVL"; repLeft "-872"; repStart "4367"; chrX rmsk exon 78531149 78531215 367 + . gene_id "ERVLB4_Xq21.1a"; transcript_id "ERVLB4_Xq21.1a"; locus "ERVLB4_Xq21.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1818"; repClass "LTR"; repEnd "4978"; repFamily "ERVL"; repLeft "-736"; repStart "4912"; ### ERVLB4_Xq21.1b ### chrX rmsk gene 78990806 78996168 . - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1819"; model_cov "3787"; model_pct "66.3"; chrX rmsk exon 78990806 78990896 2216 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "92"; repFamily "ERVL"; repLeft "6"; repStart "-423"; chrX rmsk exon 78990901 78991448 2456 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "5182"; repStart "-2"; chrX rmsk exon 78991435 78991899 2125 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "4145"; repFamily "ERVL"; repLeft "3665"; repStart "-1569"; chrX rmsk exon 78991920 78993044 5910 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "2763"; repFamily "ERVL"; repLeft "1614"; repStart "-2951"; chrX rmsk exon 78993997 78995644 7467 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "1629"; repFamily "ERVL"; repLeft "1"; repStart "-4085"; chrX rmsk exon 78995645 78996168 2344 - . gene_id "ERVLB4_Xq21.1b"; transcript_id "ERVLB4_Xq21.1b"; locus "ERVLB4_Xq21.1b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1819"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### MER61_Xq21.1a ### chrX rmsk gene 79018523 79020481 . + . gene_id "MER61_Xq21.1a"; transcript_id "MER61_Xq21.1a"; locus "MER61_Xq21.1a"; category "internal"; intModel "MER61-int"; locid "MER61-int_0391"; model_cov "1980"; model_pct "38.0"; chrX rmsk exon 79018523 79020481 13251 + . gene_id "MER61_Xq21.1a"; transcript_id "MER61_Xq21.1a"; locus "MER61_Xq21.1a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0391"; repClass "LTR"; repEnd "3839"; repFamily "ERV1"; repLeft "-1378"; repStart "1859"; ### ERVLB4_Xq21.1c ### chrX rmsk gene 79049695 79054423 . - . gene_id "ERVLB4_Xq21.1c"; transcript_id "ERVLB4_Xq21.1c"; locus "ERVLB4_Xq21.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1820"; model_cov "4380"; model_pct "76.7"; chrX rmsk exon 79049695 79051961 18809 - . gene_id "ERVLB4_Xq21.1c"; transcript_id "ERVLB4_Xq21.1c"; locus "ERVLB4_Xq21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1820"; repClass "LTR"; repEnd "5303"; repFamily "ERVL"; repLeft "3024"; repStart "-411"; chrX rmsk exon 79052335 79054423 18809 - . gene_id "ERVLB4_Xq21.1c"; transcript_id "ERVLB4_Xq21.1c"; locus "ERVLB4_Xq21.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1820"; repClass "LTR"; repEnd "3023"; repFamily "ERVL"; repLeft "922"; repStart "-2691"; ### ERVL_Xq21.1a ### chrX rmsk gene 79351332 79353473 . + . gene_id "ERVL_Xq21.1a"; transcript_id "ERVL_Xq21.1a"; locus "ERVL_Xq21.1a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0480"; model_cov "2205"; model_pct "38.3"; chrX rmsk exon 79351332 79351644 454 + . gene_id "ERVL_Xq21.1a"; transcript_id "ERVL_Xq21.1a"; locus "ERVL_Xq21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0480"; repClass "LTR"; repEnd "1293"; repFamily "ERVL"; repLeft "-4464"; repStart "971"; chrX rmsk exon 79351714 79353473 2470 + . gene_id "ERVL_Xq21.1a"; transcript_id "ERVL_Xq21.1a"; locus "ERVL_Xq21.1a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0480"; repClass "LTR"; repEnd "3437"; repFamily "ERVL"; repLeft "-2320"; repStart "1554"; ### MER4_Xq21.1a ### chrX rmsk gene 79455176 79462438 . + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0850"; model_cov "5834"; model_pct "88.4"; chrX rmsk exon 79455176 79455273 263 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0850"; repClass "LTR"; repEnd "444"; repFamily "ERV1"; repLeft "-220"; repStart "259"; chrX rmsk exon 79455273 79455324 1720 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0850"; repClass "LTR"; repEnd "414"; repFamily "ERV1"; repLeft "-250"; repStart "363"; chrX rmsk exon 79455583 79455824 1720 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0850"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "415"; chrX rmsk exon 79455833 79456212 9059 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0850"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "-6192"; repStart "6"; chrX rmsk exon 79457086 79457680 9059 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0850"; repClass "LTR"; repEnd "1048"; repFamily "ERV1"; repLeft "-5550"; repStart "407"; chrX rmsk exon 79457979 79462438 12710 + . gene_id "MER4_Xq21.1a"; transcript_id "MER4_Xq21.1a"; locus "MER4_Xq21.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0850"; repClass "LTR"; repEnd "5842"; repFamily "ERV1"; repLeft "-756"; repStart "1049"; ### MER4_Xq21.1b ### chrX rmsk gene 79470811 79472282 . + . gene_id "MER4_Xq21.1b"; transcript_id "MER4_Xq21.1b"; locus "MER4_Xq21.1b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0852"; model_cov "722"; model_pct "10.9"; chrX rmsk exon 79470811 79471553 3006 + . gene_id "MER4_Xq21.1b"; transcript_id "MER4_Xq21.1b"; locus "MER4_Xq21.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0852"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "5875"; chrX rmsk exon 79471559 79472282 3814 + . gene_id "MER4_Xq21.1b"; transcript_id "MER4_Xq21.1b"; locus "MER4_Xq21.1b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0852"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xq21.1b ### chrX rmsk gene 79506136 79507342 . + . gene_id "MER61_Xq21.1b"; transcript_id "MER61_Xq21.1b"; locus "MER61_Xq21.1b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0392"; model_cov "844"; model_pct "16.2"; chrX rmsk exon 79506136 79506564 2089 + . gene_id "MER61_Xq21.1b"; transcript_id "MER61_Xq21.1b"; locus "MER61_Xq21.1b"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0392"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "14"; chrX rmsk exon 79506591 79507342 2482 + . gene_id "MER61_Xq21.1b"; transcript_id "MER61_Xq21.1b"; locus "MER61_Xq21.1b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0392"; repClass "LTR"; repEnd "864"; repFamily "ERV1"; repLeft "-4353"; repStart "20"; ### MER61_Xq21.1c ### chrX rmsk gene 79511168 79516311 . + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0393"; model_cov "4207"; model_pct "80.6"; chrX rmsk exon 79511168 79512734 22281 + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0393"; repClass "LTR"; repEnd "2378"; repFamily "ERV1"; repLeft "-2839"; repStart "1212"; chrX rmsk exon 79513036 79514869 22281 + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0393"; repClass "LTR"; repEnd "4235"; repFamily "ERV1"; repLeft "-982"; repStart "2169"; chrX rmsk exon 79514934 79515768 22281 + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0393"; repClass "LTR"; repEnd "5178"; repFamily "ERV1"; repLeft "-39"; repStart "4236"; chrX rmsk exon 79515854 79515887 1944 + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0393"; repClass "LTR"; repEnd "5212"; repFamily "ERV1"; repLeft "-5"; repStart "5179"; chrX rmsk exon 79515888 79516311 1994 + . gene_id "MER61_Xq21.1c"; transcript_id "MER61_Xq21.1c"; locus "MER61_Xq21.1c"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0393"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-3"; repStart "2"; ### HERVFRD_Xq21.1a ### chrX rmsk gene 79721054 79727688 . + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0195"; model_cov "3830"; model_pct "53.2"; chrX rmsk exon 79721054 79721746 3926 + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0195"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "-28"; repStart "1"; chrX rmsk exon 79721753 79722038 1754 + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0195"; repClass "LTR"; repEnd "297"; repFamily "ERV1"; repLeft "-6908"; repStart "1"; chrX rmsk exon 79722060 79724646 13230 + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0195"; repClass "LTR"; repEnd "6059"; repFamily "ERV1"; repLeft "-1146"; repStart "3158"; chrX rmsk exon 79726345 79726976 4499 + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0195"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6564"; chrX rmsk exon 79726977 79727688 4027 + . gene_id "HERVFRD_Xq21.1a"; transcript_id "HERVFRD_Xq21.1a"; locus "HERVFRD_Xq21.1a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0195"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### HERV4_Xq21.1 ### chrX rmsk gene 79724930 79726347 . + . gene_id "HERV4_Xq21.1"; transcript_id "HERV4_Xq21.1"; locus "HERV4_Xq21.1"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0143"; model_cov "1421"; model_pct "21.7"; chrX rmsk exon 79724930 79726347 1211 + . gene_id "HERV4_Xq21.1"; transcript_id "HERV4_Xq21.1"; locus "HERV4_Xq21.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0143"; repClass "LTR"; repEnd "4504"; repFamily "ERV1"; repLeft "-2035"; repStart "3083"; ### MER4B_Xq21.1a ### chrX rmsk gene 79728683 79731109 . + . gene_id "MER4B_Xq21.1a"; transcript_id "MER4B_Xq21.1a"; locus "MER4B_Xq21.1a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0507"; model_cov "1861"; model_pct "27.5"; chrX rmsk exon 79728683 79729492 1397 + . gene_id "MER4B_Xq21.1a"; transcript_id "MER4B_Xq21.1a"; locus "MER4B_Xq21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0507"; repClass "LTR"; repEnd "3212"; repFamily "ERV1"; repLeft "-3546"; repStart "2305"; chrX rmsk exon 79730162 79731109 4373 + . gene_id "MER4B_Xq21.1a"; transcript_id "MER4B_Xq21.1a"; locus "MER4B_Xq21.1a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0507"; repClass "LTR"; repEnd "4152"; repFamily "ERV1"; repLeft "-2606"; repStart "3198"; ### HERVL_Xq21.1c ### chrX rmsk gene 79736447 79739095 . + . gene_id "HERVL_Xq21.1c"; transcript_id "HERVL_Xq21.1c"; locus "HERVL_Xq21.1c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1309"; model_cov "2149"; model_pct "38.0"; chrX rmsk exon 79736447 79738565 15264 + . gene_id "HERVL_Xq21.1c"; transcript_id "HERVL_Xq21.1c"; locus "HERVL_Xq21.1c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1309"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3505"; chrX rmsk exon 79738566 79739095 2275 + . gene_id "HERVL_Xq21.1c"; transcript_id "HERVL_Xq21.1c"; locus "HERVL_Xq21.1c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1309"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### PRIMA4_Xq21.1a ### chrX rmsk gene 79818632 79828808 . - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; category "prototype"; intModel "PRIMA4-int"; locid "PRIMA4-int_0246"; model_cov "8266"; model_pct "100.0"; chrX rmsk exon 79818632 79819248 4049 - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0246"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 79819264 79826868 55161 - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0246"; repClass "LTR"; repEnd "8250"; repFamily "ERV1"; repLeft "566"; repStart "-20"; chrX rmsk exon 79826919 79827185 2651 - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0246"; repClass "LTR"; repEnd "2310"; repFamily "ERV1"; repLeft "1913"; repStart "-5960"; chrX rmsk exon 79827965 79828127 2651 - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0246"; repClass "LTR"; repEnd "240"; repFamily "ERV1"; repLeft "55"; repStart "-8030"; chrX rmsk exon 79828182 79828808 3975 - . gene_id "PRIMA4_Xq21.1a"; transcript_id "PRIMA4_Xq21.1a"; locus "PRIMA4_Xq21.1a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0246"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq21.1d ### chrX rmsk gene 79848732 79855441 . + . gene_id "HERVL_Xq21.1d"; transcript_id "HERVL_Xq21.1d"; locus "HERVL_Xq21.1d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1310"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 79848732 79849120 2642 + . gene_id "HERVL_Xq21.1d"; transcript_id "HERVL_Xq21.1d"; locus "HERVL_Xq21.1d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1310"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "-75"; repStart "1"; chrX rmsk exon 79849415 79854996 41434 + . gene_id "HERVL_Xq21.1d"; transcript_id "HERVL_Xq21.1d"; locus "HERVL_Xq21.1d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1310"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 79854997 79855441 3210 + . gene_id "HERVL_Xq21.1d"; transcript_id "HERVL_Xq21.1d"; locus "HERVL_Xq21.1d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1310"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVW_Xq21.1b ### chrX rmsk gene 79955891 79963094 . + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0311"; model_cov "6347"; model_pct "73.6"; chrX rmsk exon 79955891 79956442 3760 + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0311"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "256"; chrX rmsk exon 79956443 79962455 48180 + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0311"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "1"; chrX rmsk exon 79962449 79962487 298 + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0311"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chrX rmsk exon 79962478 79962769 2414 + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0311"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chrX rmsk exon 79962770 79963094 2474 + . gene_id "HERVW_Xq21.1b"; transcript_id "HERVW_Xq21.1b"; locus "HERVW_Xq21.1b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0311"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "-456"; repStart "1"; ### HML3_Xq21.1b ### chrX rmsk gene 80042634 80048272 . + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0247"; model_cov "4633"; model_pct "76.9"; chrX rmsk exon 80042634 80043157 3525 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 80043158 80043826 5043 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "1"; chrX rmsk exon 80043827 80044834 7973 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "2646"; repFamily "ERVK"; repLeft "-3375"; repStart "1637"; chrX rmsk exon 80044831 80044865 264 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "2850"; repFamily "ERVK"; repLeft "-3171"; repStart "2816"; chrX rmsk exon 80044864 80047780 23497 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3104"; chrX rmsk exon 80047781 80048272 3754 + . gene_id "HML3_Xq21.1b"; transcript_id "HML3_Xq21.1b"; locus "HML3_Xq21.1b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0247"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4_Xq21.1c ### chrX rmsk gene 80097630 80105869 . + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0853"; model_cov "6628"; model_pct "100.0"; chrX rmsk exon 80097630 80097776 1032 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0853"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "454"; chrX rmsk exon 80097780 80098466 2163 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0853"; repClass "LTR"; repEnd "830"; repFamily "ERV1"; repLeft "-5768"; repStart "1"; chrX rmsk exon 80098763 80099100 1946 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0853"; repClass "LTR"; repEnd "1136"; repFamily "ERV1"; repLeft "-5462"; repStart "831"; chrX rmsk exon 80099711 80101221 17311 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0853"; repClass "LTR"; repEnd "2806"; repFamily "ERV1"; repLeft "-3792"; repStart "1100"; chrX rmsk exon 80101302 80104015 17311 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0853"; repClass "LTR"; repEnd "5594"; repFamily "ERV1"; repLeft "-1004"; repStart "2807"; chrX rmsk exon 80104228 80105240 17311 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0853"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5595"; chrX rmsk exon 80105246 80105869 3581 + . gene_id "MER4_Xq21.1c"; transcript_id "MER4_Xq21.1c"; locus "MER4_Xq21.1c"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0853"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xq21.1d ### chrX rmsk gene 80169816 80170920 . - . gene_id "ERVLB4_Xq21.1d"; transcript_id "ERVLB4_Xq21.1d"; locus "ERVLB4_Xq21.1d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1822"; model_cov "805"; model_pct "14.1"; chrX rmsk exon 80169816 80170024 1090 - . gene_id "ERVLB4_Xq21.1d"; transcript_id "ERVLB4_Xq21.1d"; locus "ERVLB4_Xq21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1822"; repClass "LTR"; repEnd "2522"; repFamily "ERVL"; repLeft "2311"; repStart "-3192"; chrX rmsk exon 80170017 80170597 3032 - . gene_id "ERVLB4_Xq21.1d"; transcript_id "ERVLB4_Xq21.1d"; locus "ERVLB4_Xq21.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1822"; repClass "LTR"; repEnd "596"; repFamily "ERVL"; repLeft "2"; repStart "-5118"; chrX rmsk exon 80170613 80170920 1218 - . gene_id "ERVLB4_Xq21.1d"; transcript_id "ERVLB4_Xq21.1d"; locus "ERVLB4_Xq21.1d"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1822"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "82"; repStart "-14"; ### HERVFRD_Xq21.1b ### chrX rmsk gene 80232775 80239413 . - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0196"; model_cov "4793"; model_pct "66.5"; chrX rmsk exon 80232775 80233454 3330 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0196"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chrX rmsk exon 80233457 80235163 6022 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0196"; repClass "LTR"; repEnd "7195"; repFamily "ERV1"; repLeft "5201"; repStart "-10"; chrX rmsk exon 80235162 80236012 3317 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0196"; repClass "LTR"; repEnd "4251"; repFamily "ERV1"; repLeft "3598"; repStart "-2954"; chrX rmsk exon 80236001 80236636 3048 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0196"; repClass "LTR"; repEnd "3806"; repFamily "ERV1"; repLeft "3328"; repStart "-3399"; chrX rmsk exon 80236638 80237286 3424 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0196"; repClass "LTR"; repEnd "1840"; repFamily "ERV1"; repLeft "1194"; repStart "-5365"; chrX rmsk exon 80237288 80238297 6123 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0196"; repClass "LTR"; repEnd "1023"; repFamily "ERV1"; repLeft "1"; repStart "-6182"; chrX rmsk exon 80238341 80238734 3835 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0196"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "319"; repStart "-23"; chrX rmsk exon 80239084 80239413 3835 - . gene_id "HERVFRD_Xq21.1b"; transcript_id "HERVFRD_Xq21.1b"; locus "HERVFRD_Xq21.1b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0196"; repClass "LTR"; repEnd "318"; repFamily "ERV1"; repLeft "1"; repStart "-416"; ### LTR25_Xq21.1a ### chrX rmsk gene 80312695 80317563 . + . gene_id "LTR25_Xq21.1a"; transcript_id "LTR25_Xq21.1a"; locus "LTR25_Xq21.1a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0143"; model_cov "8024"; model_pct "100.0"; chrX rmsk exon 80312695 80313616 6120 + . gene_id "LTR25_Xq21.1a"; transcript_id "LTR25_Xq21.1a"; locus "LTR25_Xq21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0143"; repClass "LTR"; repEnd "2523"; repFamily "ERV1"; repLeft "-4665"; repStart "1603"; chrX rmsk exon 80313592 80316176 15215 + . gene_id "LTR25_Xq21.1a"; transcript_id "LTR25_Xq21.1a"; locus "LTR25_Xq21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0143"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "-1142"; repStart "1118"; chrX rmsk exon 80316467 80317563 15215 + . gene_id "LTR25_Xq21.1a"; transcript_id "LTR25_Xq21.1a"; locus "LTR25_Xq21.1a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0143"; repClass "LTR"; repEnd "6664"; repFamily "ERV1"; repLeft "-524"; repStart "4488"; ### MER4_Xq21.1d ### chrX rmsk gene 80403797 80405239 . - . gene_id "MER4_Xq21.1d"; transcript_id "MER4_Xq21.1d"; locus "MER4_Xq21.1d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0854"; model_cov "1115"; model_pct "16.9"; chrX rmsk exon 80403797 80404134 2278 - . gene_id "MER4_Xq21.1d"; transcript_id "MER4_Xq21.1d"; locus "MER4_Xq21.1d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0854"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "319"; repStart "0"; chrX rmsk exon 80404147 80404980 4542 - . gene_id "MER4_Xq21.1d"; transcript_id "MER4_Xq21.1d"; locus "MER4_Xq21.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0854"; repClass "LTR"; repEnd "4684"; repFamily "ERV1"; repLeft "3837"; repStart "-1914"; chrX rmsk exon 80404975 80405239 1151 - . gene_id "MER4_Xq21.1d"; transcript_id "MER4_Xq21.1d"; locus "MER4_Xq21.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0854"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "3418"; repStart "-2912"; ### MER4_Xq21.1e ### chrX rmsk gene 80411260 80413382 . - . gene_id "MER4_Xq21.1e"; transcript_id "MER4_Xq21.1e"; locus "MER4_Xq21.1e"; category "internal"; intModel "MER4-int"; locid "MER4-int_0855"; model_cov "1039"; model_pct "15.7"; chrX rmsk exon 80411260 80411817 1834 - . gene_id "MER4_Xq21.1e"; transcript_id "MER4_Xq21.1e"; locus "MER4_Xq21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0855"; repClass "LTR"; repEnd "2204"; repFamily "ERV1"; repLeft "1632"; repStart "-4394"; chrX rmsk exon 80412771 80413382 1197 - . gene_id "MER4_Xq21.1e"; transcript_id "MER4_Xq21.1e"; locus "MER4_Xq21.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0855"; repClass "LTR"; repEnd "-85"; repFamily "ERV1"; repLeft "-552"; repStart "-6683"; ### MER4_Xq21.1f ### chrX rmsk gene 80413815 80414900 . - . gene_id "MER4_Xq21.1f"; transcript_id "MER4_Xq21.1f"; locus "MER4_Xq21.1f"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0856"; model_cov "685"; model_pct "10.4"; chrX rmsk exon 80413815 80414390 2010 - . gene_id "MER4_Xq21.1f"; transcript_id "MER4_Xq21.1f"; locus "MER4_Xq21.1f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0856"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chrX rmsk exon 80414394 80414900 2699 - . gene_id "MER4_Xq21.1f"; transcript_id "MER4_Xq21.1f"; locus "MER4_Xq21.1f"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0856"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_Xq21.1b ### chrX rmsk gene 80423250 80433342 . - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; category "prototype"; intModel "LTR25-int"; locid "LTR25-int_0144"; model_cov "7573"; model_pct "100.0"; chrX rmsk exon 80423250 80424041 3369 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 80424042 80425746 25550 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "7177"; repFamily "ERV1"; repLeft "5456"; repStart "-11"; chrX rmsk exon 80426033 80426800 25550 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "5455"; repFamily "ERV1"; repLeft "4677"; repStart "-1733"; chrX rmsk exon 80427155 80428922 25550 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "4676"; repFamily "ERV1"; repLeft "2875"; repStart "-2512"; chrX rmsk exon 80428896 80429306 3861 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "1485"; repFamily "ERV1"; repLeft "1055"; repStart "-5703"; chrX rmsk exon 80429603 80431505 7937 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "1102"; repFamily "ERV1"; repLeft "-921"; repStart "-6086"; chrX rmsk exon 80431820 80432633 7937 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "821"; repFamily "ERV1"; repLeft "1"; repStart "-6367"; chrX rmsk exon 80432634 80433342 3768 - . gene_id "LTR25_Xq21.1b"; transcript_id "LTR25_Xq21.1b"; locus "LTR25_Xq21.1b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0144"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "115"; repStart "0"; ### HML5_Xq21.1b ### chrX rmsk gene 80469061 80472284 . + . gene_id "HML5_Xq21.1b"; transcript_id "HML5_Xq21.1b"; locus "HML5_Xq21.1b"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0138"; model_cov "2750"; model_pct "40.2"; chrX rmsk exon 80469061 80471740 20388 + . gene_id "HML5_Xq21.1b"; transcript_id "HML5_Xq21.1b"; locus "HML5_Xq21.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0138"; repClass "LTR"; repEnd "6817"; repFamily "ERVK"; repLeft "-20"; repStart "4083"; chrX rmsk exon 80471787 80471799 20388 + . gene_id "HML5_Xq21.1b"; transcript_id "HML5_Xq21.1b"; locus "HML5_Xq21.1b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0138"; repClass "LTR"; repEnd "6834"; repFamily "ERVK"; repLeft "-3"; repStart "6818"; chrX rmsk exon 80471802 80472284 2140 + . gene_id "HML5_Xq21.1b"; transcript_id "HML5_Xq21.1b"; locus "HML5_Xq21.1b"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0138"; repClass "LTR"; repEnd "522"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### HUERSP3_Xq21.1a ### chrX rmsk gene 80477564 80484436 . + . gene_id "HUERSP3_Xq21.1a"; transcript_id "HUERSP3_Xq21.1a"; locus "HUERSP3_Xq21.1a"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0226"; model_cov "6392"; model_pct "71.7"; chrX rmsk exon 80477564 80483815 27192 + . gene_id "HUERSP3_Xq21.1a"; transcript_id "HUERSP3_Xq21.1a"; locus "HUERSP3_Xq21.1a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0226"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "-1"; repStart "2526"; chrX rmsk exon 80483816 80484436 3726 + . gene_id "HUERSP3_Xq21.1a"; transcript_id "HUERSP3_Xq21.1a"; locus "HUERSP3_Xq21.1a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0226"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_Xq21.1 ### chrX rmsk gene 80486852 80487899 . + . gene_id "LTR57_Xq21.1"; transcript_id "LTR57_Xq21.1"; locus "LTR57_Xq21.1"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0194"; model_cov "1091"; model_pct "20.4"; chrX rmsk exon 80486852 80487899 4628 + . gene_id "LTR57_Xq21.1"; transcript_id "LTR57_Xq21.1"; locus "LTR57_Xq21.1"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0194"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-3954"; repStart "298"; ### LTR25_Xq21.1c ### chrX rmsk gene 80512828 80515196 . - . gene_id "LTR25_Xq21.1c"; transcript_id "LTR25_Xq21.1c"; locus "LTR25_Xq21.1c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0145"; model_cov "2353"; model_pct "32.7"; chrX rmsk exon 80512828 80514240 6890 - . gene_id "LTR25_Xq21.1c"; transcript_id "LTR25_Xq21.1c"; locus "LTR25_Xq21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0145"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "5791"; repStart "-1"; chrX rmsk exon 80514238 80514440 985 - . gene_id "LTR25_Xq21.1c"; transcript_id "LTR25_Xq21.1c"; locus "LTR25_Xq21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0145"; repClass "LTR"; repEnd "4930"; repFamily "ERV1"; repLeft "4728"; repStart "-2258"; chrX rmsk exon 80514434 80515196 4669 - . gene_id "LTR25_Xq21.1c"; transcript_id "LTR25_Xq21.1c"; locus "LTR25_Xq21.1c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0145"; repClass "LTR"; repEnd "4527"; repFamily "ERV1"; repLeft "3772"; repStart "-2661"; ### HERVL_Xq21.1e ### chrX rmsk gene 80522811 80528183 . + . gene_id "HERVL_Xq21.1e"; transcript_id "HERVL_Xq21.1e"; locus "HERVL_Xq21.1e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1311"; model_cov "2695"; model_pct "47.7"; chrX rmsk exon 80522811 80525232 18011 + . gene_id "HERVL_Xq21.1e"; transcript_id "HERVL_Xq21.1e"; locus "HERVL_Xq21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1311"; repClass "LTR"; repEnd "5374"; repFamily "ERVL"; repLeft "-280"; repStart "2978"; chrX rmsk exon 80527433 80527729 1897 + . gene_id "HERVL_Xq21.1e"; transcript_id "HERVL_Xq21.1e"; locus "HERVL_Xq21.1e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1311"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5355"; chrX rmsk exon 80527730 80528183 3214 + . gene_id "HERVL_Xq21.1e"; transcript_id "HERVL_Xq21.1e"; locus "HERVL_Xq21.1e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1311"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_Xq21.1g ### chrX rmsk gene 80587342 80588446 . + . gene_id "MER4_Xq21.1g"; transcript_id "MER4_Xq21.1g"; locus "MER4_Xq21.1g"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0857"; model_cov "729"; model_pct "11.0"; chrX rmsk exon 80587342 80588038 3238 + . gene_id "MER4_Xq21.1g"; transcript_id "MER4_Xq21.1g"; locus "MER4_Xq21.1g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0857"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "5864"; chrX rmsk exon 80588040 80588446 1987 + . gene_id "MER4_Xq21.1g"; transcript_id "MER4_Xq21.1g"; locus "MER4_Xq21.1g"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0857"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVL_Xq21.1b ### chrX rmsk gene 80765000 80766448 . + . gene_id "ERVL_Xq21.1b"; transcript_id "ERVL_Xq21.1b"; locus "ERVL_Xq21.1b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0482"; model_cov "991"; model_pct "17.2"; chrX rmsk exon 80765000 80765990 4278 + . gene_id "ERVL_Xq21.1b"; transcript_id "ERVL_Xq21.1b"; locus "ERVL_Xq21.1b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0482"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4766"; chrX rmsk exon 80765991 80766448 1922 + . gene_id "ERVL_Xq21.1b"; transcript_id "ERVL_Xq21.1b"; locus "ERVL_Xq21.1b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0482"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4B_Xq21.1b ### chrX rmsk gene 80847232 80854970 . - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0508"; model_cov "5802"; model_pct "85.9"; chrX rmsk exon 80847232 80847673 3266 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "194"; repStart "0"; chrX rmsk exon 80847976 80848159 3266 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "5"; repStart "-417"; chrX rmsk exon 80848164 80851652 24564 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "3341"; repStart "0"; chrX rmsk exon 80851953 80852177 24564 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "3340"; repFamily "ERV1"; repLeft "3071"; repStart "-3418"; chrX rmsk exon 80852487 80853182 24564 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "3070"; repFamily "ERV1"; repLeft "2379"; repStart "-3688"; chrX rmsk exon 80853214 80854010 6410 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "1585"; repFamily "ERV1"; repLeft "765"; repStart "-5173"; chrX rmsk exon 80854297 80854365 6410 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "764"; repFamily "ERV1"; repLeft "687"; repStart "-5994"; chrX rmsk exon 80854404 80854844 6410 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "239"; repStart "-6072"; chrX rmsk exon 80854888 80854970 520 - . gene_id "MER4B_Xq21.1b"; transcript_id "MER4B_Xq21.1b"; locus "MER4B_Xq21.1b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0508"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "204"; repStart "-6473"; ### MER4_Xq21.1h ### chrX rmsk gene 80898077 80900184 . + . gene_id "MER4_Xq21.1h"; transcript_id "MER4_Xq21.1h"; locus "MER4_Xq21.1h"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0860"; model_cov "1594"; model_pct "24.2"; chrX rmsk exon 80898077 80899722 6614 + . gene_id "MER4_Xq21.1h"; transcript_id "MER4_Xq21.1h"; locus "MER4_Xq21.1h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0860"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5002"; chrX rmsk exon 80899730 80900184 2883 + . gene_id "MER4_Xq21.1h"; transcript_id "MER4_Xq21.1h"; locus "MER4_Xq21.1h"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0860"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_Xq21.1a ### chrX rmsk gene 81072444 81073194 . - . gene_id "ERVLE_Xq21.1a"; transcript_id "ERVLE_Xq21.1a"; locus "ERVLE_Xq21.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3680"; model_cov "789"; model_pct "13.9"; chrX rmsk exon 81072444 81073194 1575 - . gene_id "ERVLE_Xq21.1a"; transcript_id "ERVLE_Xq21.1a"; locus "ERVLE_Xq21.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3680"; repClass "LTR"; repEnd "4023"; repFamily "ERVL"; repLeft "3234"; repStart "-1644"; ### ERV316A3_Xq21.1a ### chrX rmsk gene 81389978 81391887 . - . gene_id "ERV316A3_Xq21.1a"; transcript_id "ERV316A3_Xq21.1a"; locus "ERV316A3_Xq21.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2793"; model_cov "1494"; model_pct "28.6"; chrX rmsk exon 81389978 81390513 1155 - . gene_id "ERV316A3_Xq21.1a"; transcript_id "ERV316A3_Xq21.1a"; locus "ERV316A3_Xq21.1a"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2793"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "14"; repStart "0"; chrX rmsk exon 81390527 81391697 1154 - . gene_id "ERV316A3_Xq21.1a"; transcript_id "ERV316A3_Xq21.1a"; locus "ERV316A3_Xq21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2793"; repClass "LTR"; repEnd "4837"; repFamily "ERVL"; repLeft "3525"; repStart "-389"; chrX rmsk exon 81391714 81391887 257 - . gene_id "ERV316A3_Xq21.1a"; transcript_id "ERV316A3_Xq21.1a"; locus "ERV316A3_Xq21.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2793"; repClass "LTR"; repEnd "3486"; repFamily "ERVL"; repLeft "3304"; repStart "-1740"; ### HERVL_Xq21.1f ### chrX rmsk gene 81437017 81439171 . - . gene_id "HERVL_Xq21.1f"; transcript_id "HERVL_Xq21.1f"; locus "HERVL_Xq21.1f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1312"; model_cov "1705"; model_pct "30.2"; chrX rmsk exon 81437017 81438724 12605 - . gene_id "HERVL_Xq21.1f"; transcript_id "HERVL_Xq21.1f"; locus "HERVL_Xq21.1f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1312"; repClass "LTR"; repEnd "1706"; repFamily "ERVL"; repLeft "1"; repStart "-3948"; chrX rmsk exon 81438727 81438755 2762 - . gene_id "HERVL_Xq21.1f"; transcript_id "HERVL_Xq21.1f"; locus "HERVL_Xq21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1312"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "414"; repStart "-2"; chrX rmsk exon 81438792 81439171 2762 - . gene_id "HERVL_Xq21.1f"; transcript_id "HERVL_Xq21.1f"; locus "HERVL_Xq21.1f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1312"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "2"; repStart "-31"; ### ERV316A3_Xq21.1b ### chrX rmsk gene 81467211 81469203 . - . gene_id "ERV316A3_Xq21.1b"; transcript_id "ERV316A3_Xq21.1b"; locus "ERV316A3_Xq21.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2794"; model_cov "1646"; model_pct "31.5"; chrX rmsk exon 81467211 81467474 746 - . gene_id "ERV316A3_Xq21.1b"; transcript_id "ERV316A3_Xq21.1b"; locus "ERV316A3_Xq21.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2794"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "229"; repStart "0"; chrX rmsk exon 81467575 81467631 288 - . gene_id "ERV316A3_Xq21.1b"; transcript_id "ERV316A3_Xq21.1b"; locus "ERV316A3_Xq21.1b"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2794"; repClass "LTR"; repEnd "67"; repFamily "ERVL"; repLeft "10"; repStart "-413"; chrX rmsk exon 81467644 81469203 4786 - . gene_id "ERV316A3_Xq21.1b"; transcript_id "ERV316A3_Xq21.1b"; locus "ERV316A3_Xq21.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2794"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "3576"; repStart "-4"; ### HERVL_Xq21.1g ### chrX rmsk gene 81615517 81621691 . + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1313"; model_cov "5215"; model_pct "92.2"; chrX rmsk exon 81615517 81615963 3164 + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1313"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "4"; chrX rmsk exon 81615964 81616610 4590 + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1313"; repClass "LTR"; repEnd "646"; repFamily "ERVL"; repLeft "-5008"; repStart "1"; chrX rmsk exon 81616583 81621119 33471 + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1313"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1084"; chrX rmsk exon 81621120 81621555 2997 + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1313"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-101"; chrX rmsk exon 81621613 81621691 321 + . gene_id "HERVL_Xq21.1g"; transcript_id "HERVL_Xq21.1g"; locus "HERVL_Xq21.1g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1313"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "375"; ### HERV30_Xq21.1 ### chrX rmsk gene 81805740 81812516 . - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0026"; model_cov "5421"; model_pct "65.7"; chrX rmsk exon 81805740 81806437 5421 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "720"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 81806438 81808770 14317 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "5312"; repStart "0"; chrX rmsk exon 81808988 81809616 14317 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "5680"; repFamily "ERV1"; repLeft "5029"; repStart "-2577"; chrX rmsk exon 81809646 81809958 14317 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "5028"; repFamily "ERV1"; repLeft "4735"; repStart "-3229"; chrX rmsk exon 81810277 81811033 14317 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "4734"; repFamily "ERV1"; repLeft "3986"; repStart "-3523"; chrX rmsk exon 81811033 81811818 5759 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "785"; repFamily "ERV1"; repLeft "1"; repStart "-7472"; chrX rmsk exon 81811823 81812516 5325 - . gene_id "HERV30_Xq21.1"; transcript_id "HERV30_Xq21.1"; locus "HERV30_Xq21.1"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0026"; repClass "LTR"; repEnd "716"; repFamily "ERV1"; repLeft "1"; repStart "-6"; ### HUERSP1_Xq21.1b ### chrX rmsk gene 81869990 81871217 . - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0222"; model_cov "1008"; model_pct "16.1"; chrX rmsk exon 81869990 81870076 422 - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0222"; repClass "LTR"; repEnd "5814"; repFamily "ERV1"; repLeft "5742"; repStart "-449"; chrX rmsk exon 81870045 81870217 858 - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0222"; repClass "LTR"; repEnd "5032"; repFamily "ERV1"; repLeft "4862"; repStart "-1231"; chrX rmsk exon 81870447 81870753 1348 - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0222"; repClass "LTR"; repEnd "3315"; repFamily "ERV1"; repLeft "3005"; repStart "-2948"; chrX rmsk exon 81870752 81871054 1678 - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0222"; repClass "LTR"; repEnd "2282"; repFamily "ERV1"; repLeft "1977"; repStart "-3981"; chrX rmsk exon 81871067 81871217 699 - . gene_id "HUERSP1_Xq21.1b"; transcript_id "HUERSP1_Xq21.1b"; locus "HUERSP1_Xq21.1b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0222"; repClass "LTR"; repEnd "1458"; repFamily "ERV1"; repLeft "1307"; repStart "-4805"; ### ERVLB4_Xq21.1e ### chrX rmsk gene 81889968 81891796 . + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1827"; model_cov "1441"; model_pct "25.2"; chrX rmsk exon 81889968 81890283 1251 + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1827"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "-56"; repStart "4"; chrX rmsk exon 81890321 81890369 1251 + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1827"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "0"; repStart "342"; chrX rmsk exon 81890390 81890743 1617 + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1827"; repClass "LTR"; repEnd "3376"; repFamily "ERVL"; repLeft "-2338"; repStart "3006"; chrX rmsk exon 81890742 81891130 1980 + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1827"; repClass "LTR"; repEnd "4026"; repFamily "ERVL"; repLeft "-1688"; repStart "3634"; chrX rmsk exon 81891135 81891796 3449 + . gene_id "ERVLB4_Xq21.1e"; transcript_id "ERVLB4_Xq21.1e"; locus "ERVLB4_Xq21.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1827"; repClass "LTR"; repEnd "4822"; repFamily "ERVL"; repLeft "-892"; repStart "4143"; ### ERVLE_Xq21.1b ### chrX rmsk gene 81918280 81919306 . + . gene_id "ERVLE_Xq21.1b"; transcript_id "ERVLE_Xq21.1b"; locus "ERVLE_Xq21.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3681"; model_cov "971"; model_pct "17.1"; chrX rmsk exon 81918280 81918910 1769 + . gene_id "ERVLE_Xq21.1b"; transcript_id "ERVLE_Xq21.1b"; locus "ERVLE_Xq21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3681"; repClass "LTR"; repEnd "5016"; repFamily "ERVL"; repLeft "-651"; repStart "4372"; chrX rmsk exon 81918992 81919306 279 + . gene_id "ERVLE_Xq21.1b"; transcript_id "ERVLE_Xq21.1b"; locus "ERVLE_Xq21.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3681"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "-168"; repStart "5172"; ### MER4_Xq21.1i ### chrX rmsk gene 81948530 81954070 . + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0862"; model_cov "4375"; model_pct "66.3"; chrX rmsk exon 81948530 81948976 2971 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0862"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 81948978 81949567 2664 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chrX rmsk exon 81949536 81949627 371 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "-652"; repFamily "ERV1"; repLeft "-7250"; repStart "-739"; chrX rmsk exon 81949656 81949724 251 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "-5848"; repStart "687"; chrX rmsk exon 81949799 81949916 6589 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "1111"; repFamily "ERV1"; repLeft "-5487"; repStart "993"; chrX rmsk exon 81949972 81950832 6589 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "1995"; repFamily "ERV1"; repLeft "-4603"; repStart "1112"; chrX rmsk exon 81951123 81951581 6589 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "1996"; chrX rmsk exon 81952135 81952693 2670 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "3330"; repFamily "ERV1"; repLeft "-3268"; repStart "2731"; chrX rmsk exon 81952680 81954070 7909 + . gene_id "MER4_Xq21.1i"; transcript_id "MER4_Xq21.1i"; locus "MER4_Xq21.1i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0862"; repClass "LTR"; repEnd "5354"; repFamily "ERV1"; repLeft "-1244"; repStart "3912"; ### ERVLB4_Xq21.1f ### chrX rmsk gene 82014932 82021868 . + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1828"; model_cov "5489"; model_pct "96.1"; chrX rmsk exon 82014932 82015371 2097 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "494"; repFamily "ERVL"; repLeft "-62"; repStart "1"; chrX rmsk exon 82015497 82016522 4575 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "1014"; repFamily "ERVL"; repLeft "-4700"; repStart "1"; chrX rmsk exon 82016625 82017064 4575 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "1497"; repFamily "ERVL"; repLeft "-4217"; repStart "1015"; chrX rmsk exon 82017066 82018180 17613 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "2885"; repFamily "ERVL"; repLeft "-2829"; repStart "1705"; chrX rmsk exon 82018268 82019208 17613 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "3884"; repFamily "ERVL"; repLeft "-1830"; repStart "2886"; chrX rmsk exon 82019603 82021368 17613 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "5701"; repFamily "ERVL"; repLeft "-13"; repStart "3885"; chrX rmsk exon 82021382 82021868 1796 + . gene_id "ERVLB4_Xq21.1f"; transcript_id "ERVLB4_Xq21.1f"; locus "ERVLB4_Xq21.1f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1828"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER61_Xq21.1d ### chrX rmsk gene 82031888 82036564 . + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0395"; model_cov "3806"; model_pct "73.0"; chrX rmsk exon 82031888 82032222 1865 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0395"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 82032223 82032317 3341 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0395"; repClass "LTR"; repEnd "87"; repFamily "ERV1"; repLeft "-5130"; repStart "1"; chrX rmsk exon 82032618 82033353 3612 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0395"; repClass "LTR"; repEnd "1485"; repFamily "ERV1"; repLeft "-3732"; repStart "88"; chrX rmsk exon 82033661 82034166 3612 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0395"; repClass "LTR"; repEnd "1978"; repFamily "ERV1"; repLeft "-3239"; repStart "1486"; chrX rmsk exon 82034425 82036226 12071 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0395"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3386"; chrX rmsk exon 82036227 82036564 2106 + . gene_id "MER61_Xq21.1d"; transcript_id "MER61_Xq21.1d"; locus "MER61_Xq21.1d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0395"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERVL_Xq21.1c ### chrX rmsk gene 82052632 82054635 . - . gene_id "ERVL_Xq21.1c"; transcript_id "ERVL_Xq21.1c"; locus "ERVL_Xq21.1c"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0483"; model_cov "1430"; model_pct "24.8"; chrX rmsk exon 82052632 82054076 5466 - . gene_id "ERVL_Xq21.1c"; transcript_id "ERVL_Xq21.1c"; locus "ERVL_Xq21.1c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0483"; repClass "LTR"; repEnd "1432"; repFamily "ERVL"; repLeft "2"; repStart "-4325"; chrX rmsk exon 82054078 82054635 1940 - . gene_id "ERVL_Xq21.1c"; transcript_id "ERVL_Xq21.1c"; locus "ERVL_Xq21.1c"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0483"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### LTR25_Xq21.1d ### chrX rmsk gene 82081148 82086221 . - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0146"; model_cov "3910"; model_pct "54.4"; chrX rmsk exon 82081148 82083038 8123 - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0146"; repClass "LTR"; repEnd "7149"; repFamily "ERV1"; repLeft "4899"; repStart "-39"; chrX rmsk exon 82083029 82083855 3830 - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0146"; repClass "LTR"; repEnd "2550"; repFamily "ERV1"; repLeft "2219"; repStart "-4638"; chrX rmsk exon 82084162 82084605 3830 - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0146"; repClass "LTR"; repEnd "2218"; repFamily "ERV1"; repLeft "1870"; repStart "-4970"; chrX rmsk exon 82084602 82086083 3611 - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0146"; repClass "LTR"; repEnd "6888"; repFamily "ERV1"; repLeft "6038"; repStart "-300"; chrX rmsk exon 82086098 82086221 310 - . gene_id "LTR25_Xq21.1d"; transcript_id "LTR25_Xq21.1d"; locus "LTR25_Xq21.1d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0146"; repClass "LTR"; repEnd "161"; repFamily "ERV1"; repLeft "30"; repStart "-7027"; ### MER4B_Xq21.1c ### chrX rmsk gene 82091184 82092562 . - . gene_id "MER4B_Xq21.1c"; transcript_id "MER4B_Xq21.1c"; locus "MER4B_Xq21.1c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0511"; model_cov "761"; model_pct "11.3"; chrX rmsk exon 82091184 82091659 2738 - . gene_id "MER4B_Xq21.1c"; transcript_id "MER4B_Xq21.1c"; locus "MER4B_Xq21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0511"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "231"; repStart "-6047"; chrX rmsk exon 82091697 82091979 1710 - . gene_id "MER4B_Xq21.1c"; transcript_id "MER4B_Xq21.1c"; locus "MER4B_Xq21.1c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0511"; repClass "LTR"; repEnd "282"; repFamily "ERV1"; repLeft "1"; repStart "-6476"; chrX rmsk exon 82091987 82092562 3035 - . gene_id "MER4B_Xq21.1c"; transcript_id "MER4B_Xq21.1c"; locus "MER4B_Xq21.1c"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0511"; repClass "LTR"; repEnd "602"; repFamily "ERV1"; repLeft "-288"; repStart "-8"; ### HERVFH19_Xq21.1 ### chrX rmsk gene 82142828 82146169 . + . gene_id "HERVFH19_Xq21.1"; transcript_id "HERVFH19_Xq21.1"; locus "HERVFH19_Xq21.1"; category "internal"; intModel "HERVFH19-int"; locid "HERVFH19-int_0051"; model_cov "3242"; model_pct "42.0"; chrX rmsk exon 82142828 82144760 4463 + . gene_id "HERVFH19_Xq21.1"; transcript_id "HERVFH19_Xq21.1"; locus "HERVFH19_Xq21.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0051"; repClass "LTR"; repEnd "2744"; repFamily "ERV1"; repLeft "-4975"; repStart "653"; chrX rmsk exon 82145017 82146169 4463 + . gene_id "HERVFH19_Xq21.1"; transcript_id "HERVFH19_Xq21.1"; locus "HERVFH19_Xq21.1"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0051"; repClass "LTR"; repEnd "3896"; repFamily "ERV1"; repLeft "-3823"; repStart "2745"; ### MER4_Xq21.1j ### chrX rmsk gene 82277851 82283458 . + . gene_id "MER4_Xq21.1j"; transcript_id "MER4_Xq21.1j"; locus "MER4_Xq21.1j"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0863"; model_cov "6460"; model_pct "97.9"; chrX rmsk exon 82277851 82278555 2962 + . gene_id "MER4_Xq21.1j"; transcript_id "MER4_Xq21.1j"; locus "MER4_Xq21.1j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0863"; repClass "LTR"; repEnd "-817"; repFamily "ERV1"; repLeft "-7415"; repStart "-1462"; chrX rmsk exon 82278839 82279719 14308 + . gene_id "MER4_Xq21.1j"; transcript_id "MER4_Xq21.1j"; locus "MER4_Xq21.1j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0863"; repClass "LTR"; repEnd "2059"; repFamily "ERV1"; repLeft "-4539"; repStart "782"; chrX rmsk exon 82279960 82283083 14308 + . gene_id "MER4_Xq21.1j"; transcript_id "MER4_Xq21.1j"; locus "MER4_Xq21.1j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0863"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "2060"; chrX rmsk exon 82283086 82283458 1614 + . gene_id "MER4_Xq21.1j"; transcript_id "MER4_Xq21.1j"; locus "MER4_Xq21.1j"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0863"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL18_Xq21.1a ### chrX rmsk gene 82361942 82364103 . - . gene_id "HERVL18_Xq21.1a"; transcript_id "HERVL18_Xq21.1a"; locus "HERVL18_Xq21.1a"; category "internal"; intModel "HERVL18-int"; locid "HERVL18-int_0148"; model_cov "2208"; model_pct "36.5"; chrX rmsk exon 82361942 82364103 11117 - . gene_id "HERVL18_Xq21.1a"; transcript_id "HERVL18_Xq21.1a"; locus "HERVL18_Xq21.1a"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0148"; repClass "LTR"; repEnd "4757"; repFamily "ERVL"; repLeft "2549"; repStart "-1290"; ### MER61_Xq21.1e ### chrX rmsk gene 82366639 82367663 . - . gene_id "MER61_Xq21.1e"; transcript_id "MER61_Xq21.1e"; locus "MER61_Xq21.1e"; category "internal"; intModel "MER61-int"; locid "MER61-int_0396"; model_cov "961"; model_pct "18.4"; chrX rmsk exon 82366639 82367025 1953 - . gene_id "MER61_Xq21.1e"; transcript_id "MER61_Xq21.1e"; locus "MER61_Xq21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0396"; repClass "LTR"; repEnd "2647"; repFamily "ERV1"; repLeft "2343"; repStart "-2570"; chrX rmsk exon 82367006 82367663 3683 - . gene_id "MER61_Xq21.1e"; transcript_id "MER61_Xq21.1e"; locus "MER61_Xq21.1e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0396"; repClass "LTR"; repEnd "2139"; repFamily "ERV1"; repLeft "1482"; repStart "-3078"; ### HERVL18_Xq21.1b ### chrX rmsk gene 82371109 82373927 . - . gene_id "HERVL18_Xq21.1b"; transcript_id "HERVL18_Xq21.1b"; locus "HERVL18_Xq21.1b"; category "oneside"; intModel "HERVL18-int"; locid "HERVL18-int_0149"; model_cov "2545"; model_pct "42.1"; chrX rmsk exon 82371109 82373581 14352 - . gene_id "HERVL18_Xq21.1b"; transcript_id "HERVL18_Xq21.1b"; locus "HERVL18_Xq21.1b"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0149"; repClass "LTR"; repEnd "2552"; repFamily "ERVL"; repLeft "7"; repStart "-3495"; chrX rmsk exon 82373594 82373927 1321 - . gene_id "HERVL18_Xq21.1b"; transcript_id "HERVL18_Xq21.1b"; locus "HERVL18_Xq21.1b"; repName "LTR18A"; geneRegion "ltr"; locid "HERVL18-int_0149"; repClass "LTR"; repEnd "357"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_Xq21.1g ### chrX rmsk gene 82508411 82510093 . + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1829"; model_cov "1131"; model_pct "19.8"; chrX rmsk exon 82508411 82508696 977 + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1829"; repClass "LTR"; repEnd "297"; repFamily "ERVL"; repLeft "-117"; repStart "6"; chrX rmsk exon 82508697 82508801 552 + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1829"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "-1319"; repStart "4289"; chrX rmsk exon 82508802 82509240 1937 + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1829"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "-735"; repStart "4509"; chrX rmsk exon 82509239 82509740 2145 + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1829"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5159"; chrX rmsk exon 82509741 82510093 1371 + . gene_id "ERVLB4_Xq21.1g"; transcript_id "ERVLB4_Xq21.1g"; locus "ERVLB4_Xq21.1g"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1829"; repClass "LTR"; repEnd "367"; repFamily "ERVL"; repLeft "-47"; repStart "1"; ### MER41_Xq21.1a ### chrX rmsk gene 82556528 82559745 . + . gene_id "MER41_Xq21.1a"; transcript_id "MER41_Xq21.1a"; locus "MER41_Xq21.1a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0594"; model_cov "2534"; model_pct "42.6"; chrX rmsk exon 82556528 82557127 6727 + . gene_id "MER41_Xq21.1a"; transcript_id "MER41_Xq21.1a"; locus "MER41_Xq21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0594"; repClass "LTR"; repEnd "3101"; repFamily "ERV1"; repLeft "-2845"; repStart "2849"; chrX rmsk exon 82557434 82559745 7515 + . gene_id "MER41_Xq21.1a"; transcript_id "MER41_Xq21.1a"; locus "MER41_Xq21.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0594"; repClass "LTR"; repEnd "4937"; repFamily "ERV1"; repLeft "-1009"; repStart "2655"; ### HUERSP3_Xq21.1b ### chrX rmsk gene 82647664 82652018 . - . gene_id "HUERSP3_Xq21.1b"; transcript_id "HUERSP3_Xq21.1b"; locus "HUERSP3_Xq21.1b"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0227"; model_cov "3957"; model_pct "44.4"; chrX rmsk exon 82647664 82648418 13397 - . gene_id "HUERSP3_Xq21.1b"; transcript_id "HUERSP3_Xq21.1b"; locus "HUERSP3_Xq21.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0227"; repClass "LTR"; repEnd "3975"; repFamily "ERV1"; repLeft "3226"; repStart "-4944"; chrX rmsk exon 82648484 82651358 13397 - . gene_id "HUERSP3_Xq21.1b"; transcript_id "HUERSP3_Xq21.1b"; locus "HUERSP3_Xq21.1b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0227"; repClass "LTR"; repEnd "3225"; repFamily "ERV1"; repLeft "17"; repStart "-5694"; chrX rmsk exon 82651373 82652018 3350 - . gene_id "HUERSP3_Xq21.1b"; transcript_id "HUERSP3_Xq21.1b"; locus "HUERSP3_Xq21.1b"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0227"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVL_Xq21.1d ### chrX rmsk gene 82655760 82661723 . - . gene_id "ERVL_Xq21.1d"; transcript_id "ERVL_Xq21.1d"; locus "ERVL_Xq21.1d"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0484"; model_cov "5470"; model_pct "95.0"; chrX rmsk exon 82655760 82656291 2068 - . gene_id "ERVL_Xq21.1d"; transcript_id "ERVL_Xq21.1d"; locus "ERVL_Xq21.1d"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0484"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-4"; repStart "-42"; chrX rmsk exon 82656292 82659636 18183 - . gene_id "ERVL_Xq21.1d"; transcript_id "ERVL_Xq21.1d"; locus "ERVL_Xq21.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0484"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "2367"; repStart "0"; chrX rmsk exon 82659645 82660041 2281 - . gene_id "ERVL_Xq21.1d"; transcript_id "ERVL_Xq21.1d"; locus "ERVL_Xq21.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0484"; repClass "LTR"; repEnd "2266"; repFamily "ERVL"; repLeft "1873"; repStart "-3491"; chrX rmsk exon 82660040 82661723 6980 - . gene_id "ERVL_Xq21.1d"; transcript_id "ERVL_Xq21.1d"; locus "ERVL_Xq21.1d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0484"; repClass "LTR"; repEnd "1731"; repFamily "ERVL"; repLeft "44"; repStart "-4026"; ### MER4_Xq21.1n ### chrX rmsk gene 82663145 82671922 . - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; category "tandem*"; intModel "MER4-int"; locid "MER4-int_0864"; model_cov "5197"; model_pct "78.8"; chrX rmsk exon 82663145 82663598 3000 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0864"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "139"; repStart "0"; chrX rmsk exon 82663605 82666236 15424 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3888"; repStart "-2"; chrX rmsk exon 82666315 82667052 3151 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "3535"; repFamily "ERV1"; repLeft "2737"; repStart "-3063"; chrX rmsk exon 82667281 82669047 6016 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "3232"; repFamily "ERV1"; repLeft "1846"; repStart "-3366"; chrX rmsk exon 82669108 82669392 2279 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "44"; repStart "-6249"; chrX rmsk exon 82669393 82669737 2519 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0864"; repClass "LTR"; repEnd "492"; repFamily "ERV1"; repLeft "148"; repStart "-118"; chrX rmsk exon 82669757 82670937 6211 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "1244"; repFamily "ERV1"; repLeft "92"; repStart "-5354"; chrX rmsk exon 82670988 82671273 1645 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0864"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "-159"; repStart "-6473"; chrX rmsk exon 82671276 82671922 3177 - . gene_id "MER4_Xq21.1n"; transcript_id "MER4_Xq21.1n"; locus "MER4_Xq21.1n"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0864"; repClass "LTR"; repEnd "608"; repFamily "ERV1"; repLeft "-289"; repStart "-2"; ### HERVH_Xq21.1 ### chrX rmsk gene 82726766 82732949 . + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1249"; model_cov "5558"; model_pct "72.1"; chrX rmsk exon 82726766 82727197 3514 + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1249"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 82727198 82730253 9105 + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1249"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chrX rmsk exon 82730233 82732067 6368 + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1249"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-1394"; repStart "4199"; chrX rmsk exon 82732071 82732517 2819 + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1249"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7269"; chrX rmsk exon 82732518 82732949 3388 + . gene_id "HERVH_Xq21.1"; transcript_id "HERVH_Xq21.1"; locus "HERVH_Xq21.1"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1249"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Xq21.1d ### chrX rmsk gene 82739759 82748030 . - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0512"; model_cov "5718"; model_pct "84.6"; chrX rmsk exon 82739759 82740039 1545 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "6361"; repStart "-113"; chrX rmsk exon 82741156 82741794 7713 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "6317"; repFamily "ERV1"; repLeft "5683"; repStart "-441"; chrX rmsk exon 82742063 82743127 7713 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "5682"; repFamily "ERV1"; repLeft "4441"; repStart "-1076"; chrX rmsk exon 82743115 82743780 3417 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "4077"; repFamily "ERV1"; repLeft "3429"; repStart "-2681"; chrX rmsk exon 82743784 82745400 7381 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "3083"; repFamily "ERV1"; repLeft "1030"; repStart "-3675"; chrX rmsk exon 82745709 82745760 2709 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "2401"; repFamily "ERV1"; repLeft "2331"; repStart "-4357"; chrX rmsk exon 82746241 82746346 2709 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "2330"; repFamily "ERV1"; repLeft "2224"; repStart "-4428"; chrX rmsk exon 82746659 82747215 2709 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "2223"; repFamily "ERV1"; repLeft "1907"; repStart "-4535"; chrX rmsk exon 82747241 82747313 527 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "824"; repFamily "ERV1"; repLeft "752"; repStart "-5934"; chrX rmsk exon 82747315 82747602 1927 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "295"; repFamily "ERV1"; repLeft "1"; repStart "-6463"; chrX rmsk exon 82747603 82747769 1368 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "600"; repStart "0"; chrX rmsk exon 82747781 82748030 1770 - . gene_id "MER4B_Xq21.1d"; transcript_id "MER4B_Xq21.1d"; locus "MER4B_Xq21.1d"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0512"; repClass "LTR"; repEnd "252"; repFamily "ERV1"; repLeft "1"; repStart "-514"; ### ERVLE_Xq21.1c ### chrX rmsk gene 82784525 82785951 . + . gene_id "ERVLE_Xq21.1c"; transcript_id "ERVLE_Xq21.1c"; locus "ERVLE_Xq21.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3682"; model_cov "1397"; model_pct "24.7"; chrX rmsk exon 82784525 82785735 3386 + . gene_id "ERVLE_Xq21.1c"; transcript_id "ERVLE_Xq21.1c"; locus "ERVLE_Xq21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3682"; repClass "LTR"; repEnd "1194"; repFamily "ERVL"; repLeft "-4473"; repStart "3"; chrX rmsk exon 82785747 82785951 1201 + . gene_id "ERVLE_Xq21.1c"; transcript_id "ERVLE_Xq21.1c"; locus "ERVLE_Xq21.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3682"; repClass "LTR"; repEnd "2482"; repFamily "ERVL"; repLeft "-3185"; repStart "2276"; ### ERVLB4_Xq21.1h ### chrX rmsk gene 82785952 82787452 . + . gene_id "ERVLB4_Xq21.1h"; transcript_id "ERVLB4_Xq21.1h"; locus "ERVLB4_Xq21.1h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1830"; model_cov "1036"; model_pct "18.1"; chrX rmsk exon 82785952 82786422 1440 + . gene_id "ERVLB4_Xq21.1h"; transcript_id "ERVLB4_Xq21.1h"; locus "ERVLB4_Xq21.1h"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1830"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 82786423 82787147 3307 + . gene_id "ERVLB4_Xq21.1h"; transcript_id "ERVLB4_Xq21.1h"; locus "ERVLB4_Xq21.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1830"; repClass "LTR"; repEnd "730"; repFamily "ERVL"; repLeft "-4984"; repStart "1"; chrX rmsk exon 82787146 82787452 1401 + . gene_id "ERVLB4_Xq21.1h"; transcript_id "ERVLB4_Xq21.1h"; locus "ERVLB4_Xq21.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1830"; repClass "LTR"; repEnd "943"; repFamily "ERVL"; repLeft "-4771"; repStart "636"; ### ERVLB4_Xq21.1j ### chrX rmsk gene 82796020 82802515 . + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; category "tandem*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1831"; model_cov "3348"; model_pct "58.6"; chrX rmsk exon 82796020 82797740 9730 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "2933"; repFamily "ERVL"; repLeft "-2781"; repStart "1199"; chrX rmsk exon 82798627 82800205 8355 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "4544"; repFamily "ERVL"; repLeft "-1170"; repStart "2930"; chrX rmsk exon 82800208 82800249 276 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "0"; repStart "423"; chrX rmsk exon 82800262 82800321 5080 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "2612"; repFamily "ERVL"; repLeft "-3102"; repStart "2540"; chrX rmsk exon 82800723 82801748 5080 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "3650"; repFamily "ERVL"; repLeft "-2064"; repStart "2613"; chrX rmsk exon 82801790 82802066 1421 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "264"; repFamily "ERVL"; repLeft "-133"; repStart "1"; chrX rmsk exon 82802342 82802515 1421 + . gene_id "ERVLB4_Xq21.1j"; transcript_id "ERVLB4_Xq21.1j"; locus "ERVLB4_Xq21.1j"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1831"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-5"; repStart "106"; ### HUERSP3_Xq21.1c ### chrX rmsk gene 83007619 83015945 . - . gene_id "HUERSP3_Xq21.1c"; transcript_id "HUERSP3_Xq21.1c"; locus "HUERSP3_Xq21.1c"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0228"; model_cov "8742"; model_pct "98.0"; chrX rmsk exon 83007619 83008261 3106 - . gene_id "HUERSP3_Xq21.1c"; transcript_id "HUERSP3_Xq21.1c"; locus "HUERSP3_Xq21.1c"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0228"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 83008263 83014326 35252 - . gene_id "HUERSP3_Xq21.1c"; transcript_id "HUERSP3_Xq21.1c"; locus "HUERSP3_Xq21.1c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0228"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "1328"; repStart "-3"; chrX rmsk exon 83014360 83015413 2560 - . gene_id "HUERSP3_Xq21.1c"; transcript_id "HUERSP3_Xq21.1c"; locus "HUERSP3_Xq21.1c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0228"; repClass "LTR"; repEnd "1155"; repFamily "ERV1"; repLeft "1"; repStart "-7764"; chrX rmsk exon 83015414 83015945 2422 - . gene_id "HUERSP3_Xq21.1c"; transcript_id "HUERSP3_Xq21.1c"; locus "HUERSP3_Xq21.1c"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0228"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "123"; repStart "0"; ### MER41_Xq21.1b ### chrX rmsk gene 83163882 83165080 . + . gene_id "MER41_Xq21.1b"; transcript_id "MER41_Xq21.1b"; locus "MER41_Xq21.1b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0595"; model_cov "673"; model_pct "11.3"; chrX rmsk exon 83163882 83163969 769 + . gene_id "MER41_Xq21.1b"; transcript_id "MER41_Xq21.1b"; locus "MER41_Xq21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0595"; repClass "LTR"; repEnd "2974"; repFamily "ERV1"; repLeft "-2972"; repStart "2884"; chrX rmsk exon 83164285 83164550 769 + . gene_id "MER41_Xq21.1b"; transcript_id "MER41_Xq21.1b"; locus "MER41_Xq21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0595"; repClass "LTR"; repEnd "3174"; repFamily "ERV1"; repLeft "-2772"; repStart "2975"; chrX rmsk exon 83164696 83165080 1467 + . gene_id "MER41_Xq21.1b"; transcript_id "MER41_Xq21.1b"; locus "MER41_Xq21.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0595"; repClass "LTR"; repEnd "4266"; repFamily "ERV1"; repLeft "-1680"; repStart "3882"; ### HERVL_Xq21.1h ### chrX rmsk gene 83172449 83178944 . - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1314"; model_cov "5415"; model_pct "95.8"; chrX rmsk exon 83172449 83172847 2667 - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1314"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chrX rmsk exon 83172848 83174851 15189 - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1314"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3639"; repStart "0"; chrX rmsk exon 83174844 83178270 21165 - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1314"; repClass "LTR"; repEnd "3401"; repFamily "ERVL"; repLeft "1"; repStart "-2253"; chrX rmsk exon 83178271 83178354 260 - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1314"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "366"; repStart "0"; chrX rmsk exon 83178494 83178944 2677 - . gene_id "HERVL_Xq21.1h"; transcript_id "HERVL_Xq21.1h"; locus "HERVL_Xq21.1h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1314"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-107"; repStart "-60"; ### LTR25_Xq21.1e ### chrX rmsk gene 83178945 83181735 . - . gene_id "LTR25_Xq21.1e"; transcript_id "LTR25_Xq21.1e"; locus "LTR25_Xq21.1e"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0147"; model_cov "2524"; model_pct "35.1"; chrX rmsk exon 83178945 83179058 656 - . gene_id "LTR25_Xq21.1e"; transcript_id "LTR25_Xq21.1e"; locus "LTR25_Xq21.1e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0147"; repClass "LTR"; repEnd "7110"; repFamily "ERV1"; repLeft "6989"; repStart "-78"; chrX rmsk exon 83179057 83179792 7366 - . gene_id "LTR25_Xq21.1e"; transcript_id "LTR25_Xq21.1e"; locus "LTR25_Xq21.1e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0147"; repClass "LTR"; repEnd "6011"; repFamily "ERV1"; repLeft "5142"; repStart "-1177"; chrX rmsk exon 83180094 83181574 7366 - . gene_id "LTR25_Xq21.1e"; transcript_id "LTR25_Xq21.1e"; locus "LTR25_Xq21.1e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0147"; repClass "LTR"; repEnd "5158"; repFamily "ERV1"; repLeft "3773"; repStart "-2030"; chrX rmsk exon 83181581 83181735 848 - . gene_id "LTR25_Xq21.1e"; transcript_id "LTR25_Xq21.1e"; locus "LTR25_Xq21.1e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0147"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2232"; repStart "-4807"; ### ERV316A3_Xq21.1c ### chrX rmsk gene 83888534 83890106 . - . gene_id "ERV316A3_Xq21.1c"; transcript_id "ERV316A3_Xq21.1c"; locus "ERV316A3_Xq21.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2795"; model_cov "1205"; model_pct "23.1"; chrX rmsk exon 83888534 83888973 1519 - . gene_id "ERV316A3_Xq21.1c"; transcript_id "ERV316A3_Xq21.1c"; locus "ERV316A3_Xq21.1c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2795"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "1"; repStart "-11"; chrX rmsk exon 83888974 83889894 3093 - . gene_id "ERV316A3_Xq21.1c"; transcript_id "ERV316A3_Xq21.1c"; locus "ERV316A3_Xq21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2795"; repClass "LTR"; repEnd "5210"; repFamily "ERVL"; repLeft "4266"; repStart "-16"; chrX rmsk exon 83889897 83890106 615 - . gene_id "ERV316A3_Xq21.1c"; transcript_id "ERV316A3_Xq21.1c"; locus "ERV316A3_Xq21.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2795"; repClass "LTR"; repEnd "3226"; repFamily "ERVL"; repLeft "2965"; repStart "-2000"; ### ERVLB4_Xq21.1i ### chrX rmsk gene 83905174 83906548 . - . gene_id "ERVLB4_Xq21.1i"; transcript_id "ERVLB4_Xq21.1i"; locus "ERVLB4_Xq21.1i"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1834"; model_cov "904"; model_pct "15.8"; chrX rmsk exon 83905174 83905405 899 - . gene_id "ERVLB4_Xq21.1i"; transcript_id "ERVLB4_Xq21.1i"; locus "ERVLB4_Xq21.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1834"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "636"; repStart "-4860"; chrX rmsk exon 83905427 83906110 3357 - . gene_id "ERVLB4_Xq21.1i"; transcript_id "ERVLB4_Xq21.1i"; locus "ERVLB4_Xq21.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1834"; repClass "LTR"; repEnd "707"; repFamily "ERVL"; repLeft "21"; repStart "-5007"; chrX rmsk exon 83906143 83906548 1293 - . gene_id "ERVLB4_Xq21.1i"; transcript_id "ERVLB4_Xq21.1i"; locus "ERVLB4_Xq21.1i"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1834"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "1"; repStart "-89"; ### ERVL_Xq21.1e ### chrX rmsk gene 83991429 83992003 . - . gene_id "ERVL_Xq21.1e"; transcript_id "ERVL_Xq21.1e"; locus "ERVL_Xq21.1e"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0485"; model_cov "585"; model_pct "10.2"; chrX rmsk exon 83991429 83991522 462 - . gene_id "ERVL_Xq21.1e"; transcript_id "ERVL_Xq21.1e"; locus "ERVL_Xq21.1e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0485"; repClass "LTR"; repEnd "96"; repFamily "ERVL"; repLeft "1"; repStart "-318"; chrX rmsk exon 83991523 83992003 1111 - . gene_id "ERVL_Xq21.1e"; transcript_id "ERVL_Xq21.1e"; locus "ERVL_Xq21.1e"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0485"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5172"; repStart "0"; ### PRIMA4_Xq21.1b ### chrX rmsk gene 84001388 84008821 . + . gene_id "PRIMA4_Xq21.1b"; transcript_id "PRIMA4_Xq21.1b"; locus "PRIMA4_Xq21.1b"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0247"; model_cov "6767"; model_pct "81.8"; chrX rmsk exon 84001388 84001896 3321 + . gene_id "PRIMA4_Xq21.1b"; transcript_id "PRIMA4_Xq21.1b"; locus "PRIMA4_Xq21.1b"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0247"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 84001897 84004636 48491 + . gene_id "PRIMA4_Xq21.1b"; transcript_id "PRIMA4_Xq21.1b"; locus "PRIMA4_Xq21.1b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0247"; repClass "LTR"; repEnd "2847"; repFamily "ERV1"; repLeft "-5423"; repStart "1"; chrX rmsk exon 84004950 84008821 48491 + . gene_id "PRIMA4_Xq21.1b"; transcript_id "PRIMA4_Xq21.1b"; locus "PRIMA4_Xq21.1b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0247"; repClass "LTR"; repEnd "6769"; repFamily "ERV1"; repLeft "-1501"; repStart "2848"; ### PRIMA4_Xq21.1c ### chrX rmsk gene 84013659 84015812 . + . gene_id "PRIMA4_Xq21.1c"; transcript_id "PRIMA4_Xq21.1c"; locus "PRIMA4_Xq21.1c"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0248"; model_cov "1502"; model_pct "18.2"; chrX rmsk exon 84013659 84014860 9872 + . gene_id "PRIMA4_Xq21.1c"; transcript_id "PRIMA4_Xq21.1c"; locus "PRIMA4_Xq21.1c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0248"; repClass "LTR"; repEnd "7968"; repFamily "ERV1"; repLeft "-302"; repStart "6763"; chrX rmsk exon 84014983 84015289 9872 + . gene_id "PRIMA4_Xq21.1c"; transcript_id "PRIMA4_Xq21.1c"; locus "PRIMA4_Xq21.1c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0248"; repClass "LTR"; repEnd "8266"; repFamily "ERV1"; repLeft "-4"; repStart "7969"; chrX rmsk exon 84015297 84015812 3333 + . gene_id "PRIMA4_Xq21.1c"; transcript_id "PRIMA4_Xq21.1c"; locus "PRIMA4_Xq21.1c"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0248"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_Xq21.1k ### chrX rmsk gene 84015813 84019424 . - . gene_id "MER4_Xq21.1k"; transcript_id "MER4_Xq21.1k"; locus "MER4_Xq21.1k"; category "internal"; intModel "MER4-int"; locid "MER4-int_0867"; model_cov "3407"; model_pct "51.6"; chrX rmsk exon 84015813 84018352 14976 - . gene_id "MER4_Xq21.1k"; transcript_id "MER4_Xq21.1k"; locus "MER4_Xq21.1k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0867"; repClass "LTR"; repEnd "6493"; repFamily "ERV1"; repLeft "3837"; repStart "-105"; chrX rmsk exon 84018372 84018729 1291 - . gene_id "MER4_Xq21.1k"; transcript_id "MER4_Xq21.1k"; locus "MER4_Xq21.1k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0867"; repClass "LTR"; repEnd "3650"; repFamily "ERV1"; repLeft "3304"; repStart "-2948"; chrX rmsk exon 84019025 84019424 2115 - . gene_id "MER4_Xq21.1k"; transcript_id "MER4_Xq21.1k"; locus "MER4_Xq21.1k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0867"; repClass "LTR"; repEnd "3142"; repFamily "ERV1"; repLeft "2737"; repStart "-3456"; ### MER4_Xq21.1l ### chrX rmsk gene 84019648 84020968 . - . gene_id "MER4_Xq21.1l"; transcript_id "MER4_Xq21.1l"; locus "MER4_Xq21.1l"; category "internal"; intModel "MER4-int"; locid "MER4-int_0868"; model_cov "922"; model_pct "14.0"; chrX rmsk exon 84019648 84020141 5249 - . gene_id "MER4_Xq21.1l"; transcript_id "MER4_Xq21.1l"; locus "MER4_Xq21.1l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0868"; repClass "LTR"; repEnd "3244"; repFamily "ERV1"; repLeft "2747"; repStart "-3354"; chrX rmsk exon 84020494 84020860 5249 - . gene_id "MER4_Xq21.1l"; transcript_id "MER4_Xq21.1l"; locus "MER4_Xq21.1l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0868"; repClass "LTR"; repEnd "2746"; repFamily "ERV1"; repLeft "2384"; repStart "-3852"; chrX rmsk exon 84020903 84020968 278 - . gene_id "MER4_Xq21.1l"; transcript_id "MER4_Xq21.1l"; locus "MER4_Xq21.1l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0868"; repClass "LTR"; repEnd "750"; repFamily "ERV1"; repLeft "687"; repStart "-5848"; ### MER4_Xq21.1m ### chrX rmsk gene 84020993 84021636 . - . gene_id "MER4_Xq21.1m"; transcript_id "MER4_Xq21.1m"; locus "MER4_Xq21.1m"; category "internal"; intModel "MER4-int"; locid "MER4-int_0869"; model_cov "807"; model_pct "12.2"; chrX rmsk exon 84020993 84021636 2569 - . gene_id "MER4_Xq21.1m"; transcript_id "MER4_Xq21.1m"; locus "MER4_Xq21.1m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0869"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "1"; repStart "-5790"; ### MER61_Xq21.1f ### chrX rmsk gene 84656775 84659633 . - . gene_id "MER61_Xq21.1f"; transcript_id "MER61_Xq21.1f"; locus "MER61_Xq21.1f"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0397"; model_cov "2648"; model_pct "50.8"; chrX rmsk exon 84656775 84658510 8504 - . gene_id "MER61_Xq21.1f"; transcript_id "MER61_Xq21.1f"; locus "MER61_Xq21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0397"; repClass "LTR"; repEnd "2769"; repFamily "ERV1"; repLeft "960"; repStart "-2448"; chrX rmsk exon 84658512 84659340 3699 - . gene_id "MER61_Xq21.1f"; transcript_id "MER61_Xq21.1f"; locus "MER61_Xq21.1f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0397"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "2"; repStart "-4376"; chrX rmsk exon 84659347 84659633 920 - . gene_id "MER61_Xq21.1f"; transcript_id "MER61_Xq21.1f"; locus "MER61_Xq21.1f"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0397"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "1"; repStart "-31"; ### MER61_Xq21.1g ### chrX rmsk gene 84737352 84738499 . + . gene_id "MER61_Xq21.1g"; transcript_id "MER61_Xq21.1g"; locus "MER61_Xq21.1g"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0398"; model_cov "569"; model_pct "10.9"; chrX rmsk exon 84737352 84737774 2807 + . gene_id "MER61_Xq21.1g"; transcript_id "MER61_Xq21.1g"; locus "MER61_Xq21.1g"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0398"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 84737775 84737885 584 + . gene_id "MER61_Xq21.1g"; transcript_id "MER61_Xq21.1g"; locus "MER61_Xq21.1g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0398"; repClass "LTR"; repEnd "108"; repFamily "ERV1"; repLeft "-5109"; repStart "1"; chrX rmsk exon 84738018 84738499 2864 + . gene_id "MER61_Xq21.1g"; transcript_id "MER61_Xq21.1g"; locus "MER61_Xq21.1g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0398"; repClass "LTR"; repEnd "802"; repFamily "ERV1"; repLeft "-4415"; repStart "340"; ### HERVFH21_Xq21.1 ### chrX rmsk gene 84738500 84745112 . + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0042"; model_cov "5743"; model_pct "88.0"; chrX rmsk exon 84738500 84738949 2834 + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0042"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 84738950 84738996 17549 + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0042"; repClass "LTR"; repEnd "78"; repFamily "ERV1"; repLeft "-6451"; repStart "1"; chrX rmsk exon 84739029 84741230 17549 + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0042"; repClass "LTR"; repEnd "2290"; repFamily "ERV1"; repLeft "-4239"; repStart "79"; chrX rmsk exon 84741228 84744666 24458 + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0042"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "0"; repStart "3074"; chrX rmsk exon 84744667 84745112 2675 + . gene_id "HERVFH21_Xq21.1"; transcript_id "HERVFH21_Xq21.1"; locus "HERVFH21_Xq21.1"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0042"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xq21.1h ### chrX rmsk gene 84745113 84748292 . + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0399"; model_cov "2432"; model_pct "46.6"; chrX rmsk exon 84745113 84745474 2705 + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0399"; repClass "LTR"; repEnd "1120"; repFamily "ERV1"; repLeft "-4097"; repStart "818"; chrX rmsk exon 84745762 84745860 2705 + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0399"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "1121"; chrX rmsk exon 84745856 84746855 6527 + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0399"; repClass "LTR"; repEnd "2337"; repFamily "ERV1"; repLeft "-2880"; repStart "1361"; chrX rmsk exon 84746833 84747868 6552 + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0399"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "4155"; chrX rmsk exon 84747869 84748292 2823 + . gene_id "MER61_Xq21.1h"; transcript_id "MER61_Xq21.1h"; locus "MER61_Xq21.1h"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0399"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PABLA_Xq21.1 ### chrX rmsk gene 84813277 84816816 . - . gene_id "PABLA_Xq21.1"; transcript_id "PABLA_Xq21.1"; locus "PABLA_Xq21.1"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0161"; model_cov "5059"; model_pct "100.0"; chrX rmsk exon 84813277 84814747 13282 - . gene_id "PABLA_Xq21.1"; transcript_id "PABLA_Xq21.1"; locus "PABLA_Xq21.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0161"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "2692"; repStart "0"; chrX rmsk exon 84815041 84816816 13282 - . gene_id "PABLA_Xq21.1"; transcript_id "PABLA_Xq21.1"; locus "PABLA_Xq21.1"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0161"; repClass "LTR"; repEnd "2120"; repFamily "ERV1"; repLeft "-616"; repStart "-2895"; ### MER41_Xq21.1c ### chrX rmsk gene 84819310 84821106 . - . gene_id "MER41_Xq21.1c"; transcript_id "MER41_Xq21.1c"; locus "MER41_Xq21.1c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0596"; model_cov "1302"; model_pct "21.9"; chrX rmsk exon 84819310 84820468 4916 - . gene_id "MER41_Xq21.1c"; transcript_id "MER41_Xq21.1c"; locus "MER41_Xq21.1c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0596"; repClass "LTR"; repEnd "1303"; repFamily "ERV1"; repLeft "1"; repStart "-4643"; chrX rmsk exon 84820554 84821106 4123 - . gene_id "MER41_Xq21.1c"; transcript_id "MER41_Xq21.1c"; locus "MER41_Xq21.1c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0596"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Xq21.1e ### chrX rmsk gene 84854937 84863907 . - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0513"; model_cov "6181"; model_pct "91.5"; chrX rmsk exon 84854937 84855530 2999 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "3"; repStart "0"; chrX rmsk exon 84855536 84855620 6994 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "6755"; repFamily "ERV1"; repLeft "6675"; repStart "-3"; chrX rmsk exon 84857167 84859221 6994 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "6674"; repFamily "ERV1"; repLeft "4452"; repStart "-84"; chrX rmsk exon 84859221 84859392 1099 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3905"; repStart "-2670"; chrX rmsk exon 84859400 84860412 7745 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "2921"; repFamily "ERV1"; repLeft "1890"; repStart "-3837"; chrX rmsk exon 84861227 84862119 7745 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "1089"; repStart "-4105"; chrX rmsk exon 84862173 84862432 1689 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "1183"; repFamily "ERV1"; repLeft "926"; repStart "-5575"; chrX rmsk exon 84862456 84863298 5776 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "3"; repStart "-5911"; chrX rmsk exon 84863301 84863907 2902 - . gene_id "MER4B_Xq21.1e"; transcript_id "MER4B_Xq21.1e"; locus "MER4B_Xq21.1e"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0513"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Xq21.1f ### chrX rmsk gene 84869978 84873975 . + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0514"; model_cov "2883"; model_pct "42.7"; chrX rmsk exon 84869978 84870057 253 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-3672"; repStart "3007"; chrX rmsk exon 84870066 84870186 637 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "3540"; repFamily "ERV1"; repLeft "-3218"; repStart "3421"; chrX rmsk exon 84870843 84870890 302 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "3574"; repFamily "ERV1"; repLeft "-3184"; repStart "3527"; chrX rmsk exon 84870889 84871212 2030 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3753"; chrX rmsk exon 84871212 84873366 6855 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "6755"; repFamily "ERV1"; repLeft "-3"; repStart "4452"; chrX rmsk exon 84873371 84873975 2829 + . gene_id "MER4B_Xq21.1f"; transcript_id "MER4B_Xq21.1f"; locus "MER4B_Xq21.1f"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0514"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### MER4B_Xq21.1g ### chrX rmsk gene 84940702 84944682 . - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0515"; model_cov "3564"; model_pct "52.7"; chrX rmsk exon 84940702 84941522 11227 - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0515"; repClass "LTR"; repEnd "6647"; repFamily "ERV1"; repLeft "5825"; repStart "-111"; chrX rmsk exon 84941809 84942176 11227 - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0515"; repClass "LTR"; repEnd "5824"; repFamily "ERV1"; repLeft "5408"; repStart "-934"; chrX rmsk exon 84942464 84943371 11227 - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0515"; repClass "LTR"; repEnd "5407"; repFamily "ERV1"; repLeft "4452"; repStart "-1351"; chrX rmsk exon 84943371 84944069 3993 - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0515"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3031"; repStart "-2670"; chrX rmsk exon 84944372 84944682 1765 - . gene_id "MER4B_Xq21.1g"; transcript_id "MER4B_Xq21.1g"; locus "MER4B_Xq21.1g"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0515"; repClass "LTR"; repEnd "3030"; repFamily "ERV1"; repLeft "2716"; repStart "-3728"; ### HARLEQUIN_Xq21.1 ### chrX rmsk gene 84944684 84952116 . + . gene_id "HARLEQUIN_Xq21.1"; transcript_id "HARLEQUIN_Xq21.1"; locus "HARLEQUIN_Xq21.1"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0185"; model_cov "6893"; model_pct "100.0"; chrX rmsk exon 84944684 84945142 3822 + . gene_id "HARLEQUIN_Xq21.1"; transcript_id "HARLEQUIN_Xq21.1"; locus "HARLEQUIN_Xq21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0185"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 84945143 84946535 55637 + . gene_id "HARLEQUIN_Xq21.1"; transcript_id "HARLEQUIN_Xq21.1"; locus "HARLEQUIN_Xq21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0185"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "-5495"; repStart "1"; chrX rmsk exon 84946561 84952022 55637 + . gene_id "HARLEQUIN_Xq21.1"; transcript_id "HARLEQUIN_Xq21.1"; locus "HARLEQUIN_Xq21.1"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0185"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "-1"; repStart "1402"; chrX rmsk exon 84952023 84952116 777 + . gene_id "HARLEQUIN_Xq21.1"; transcript_id "HARLEQUIN_Xq21.1"; locus "HARLEQUIN_Xq21.1"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0185"; repClass "LTR"; repEnd "94"; repFamily "ERV1"; repLeft "-369"; repStart "1"; ### MER4B_Xq21.1h ### chrX rmsk gene 84954658 84958316 . - . gene_id "MER4B_Xq21.1h"; transcript_id "MER4B_Xq21.1h"; locus "MER4B_Xq21.1h"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0516"; model_cov "2716"; model_pct "40.2"; chrX rmsk exon 84954658 84954906 7797 - . gene_id "MER4B_Xq21.1h"; transcript_id "MER4B_Xq21.1h"; locus "MER4B_Xq21.1h"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0516"; repClass "LTR"; repEnd "2718"; repFamily "ERV1"; repLeft "2455"; repStart "-4040"; chrX rmsk exon 84955208 84957659 7797 - . gene_id "MER4B_Xq21.1h"; transcript_id "MER4B_Xq21.1h"; locus "MER4B_Xq21.1h"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0516"; repClass "LTR"; repEnd "2454"; repFamily "ERV1"; repLeft "1"; repStart "-4304"; chrX rmsk exon 84957660 84958316 5526 - . gene_id "MER4B_Xq21.1h"; transcript_id "MER4B_Xq21.1h"; locus "MER4B_Xq21.1h"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0516"; repClass "LTR"; repEnd "781"; repFamily "ERV1"; repLeft "98"; repStart "0"; ### HERVFRD_Xq21.1c ### chrX rmsk gene 85112359 85116781 . - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0197"; model_cov "4027"; model_pct "55.9"; chrX rmsk exon 85112359 85112927 4208 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0197"; repClass "LTR"; repEnd "571"; repFamily "ERV1"; repLeft "1"; repStart "-163"; chrX rmsk exon 85112928 85114901 11348 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0197"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "4531"; repStart "-8"; chrX rmsk exon 85114901 85116081 7009 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0197"; repClass "LTR"; repEnd "1291"; repFamily "ERV1"; repLeft "34"; repStart "-5914"; chrX rmsk exon 85116050 85116145 393 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0197"; repClass "LTR"; repEnd "105"; repFamily "ERV1"; repLeft "1"; repStart "-7100"; chrX rmsk exon 85116189 85116649 2461 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0197"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "213"; repStart "-23"; chrX rmsk exon 85116664 85116781 685 - . gene_id "HERVFRD_Xq21.1c"; transcript_id "HERVFRD_Xq21.1c"; locus "HERVFRD_Xq21.1c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0197"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "1"; repStart "-611"; ### HERVL74_Xq21.2 ### chrX rmsk gene 85678371 85679091 . + . gene_id "HERVL74_Xq21.2"; transcript_id "HERVL74_Xq21.2"; locus "HERVL74_Xq21.2"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0140"; model_cov "760"; model_pct "13.4"; chrX rmsk exon 85678371 85679091 1141 + . gene_id "HERVL74_Xq21.2"; transcript_id "HERVL74_Xq21.2"; locus "HERVL74_Xq21.2"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0140"; repClass "LTR"; repEnd "2383"; repFamily "ERVL"; repLeft "-3302"; repStart "1623"; ### HUERSP3B_Xq21.2 ### chrX rmsk gene 85811936 85820285 . + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0144"; model_cov "7006"; model_pct "94.4"; chrX rmsk exon 85811936 85812519 3359 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 85812523 85815067 23273 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "2796"; repFamily "ERV1"; repLeft "-4622"; repStart "4"; chrX rmsk exon 85815493 85818948 23273 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "6591"; repFamily "ERV1"; repLeft "-827"; repStart "2797"; chrX rmsk exon 85818954 85819176 1254 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "5482"; repFamily "ERV1"; repLeft "-1936"; repStart "5257"; chrX rmsk exon 85819507 85819701 1223 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "7414"; repFamily "ERV1"; repLeft "-4"; repStart "7219"; chrX rmsk exon 85819705 85820285 3417 + . gene_id "HUERSP3B_Xq21.2"; transcript_id "HUERSP3B_Xq21.2"; locus "HUERSP3B_Xq21.2"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0144"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq21.2a ### chrX rmsk gene 86306403 86312863 . + . gene_id "HERVL_Xq21.2a"; transcript_id "HERVL_Xq21.2a"; locus "HERVL_Xq21.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1318"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 86306403 86306830 2817 + . gene_id "HERVL_Xq21.2a"; transcript_id "HERVL_Xq21.2a"; locus "HERVL_Xq21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1318"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chrX rmsk exon 86306833 86312455 41134 + . gene_id "HERVL_Xq21.2a"; transcript_id "HERVL_Xq21.2a"; locus "HERVL_Xq21.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1318"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 86312456 86312863 2570 + . gene_id "HERVL_Xq21.2a"; transcript_id "HERVL_Xq21.2a"; locus "HERVL_Xq21.2a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1318"; repClass "LTR"; repEnd "433"; repFamily "ERVL"; repLeft "-11"; repStart "1"; ### LTR25_Xq21.2 ### chrX rmsk gene 86316583 86324032 . - . gene_id "LTR25_Xq21.2"; transcript_id "LTR25_Xq21.2"; locus "LTR25_Xq21.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0148"; model_cov "7184"; model_pct "99.9"; chrX rmsk exon 86316583 86316837 32384 - . gene_id "LTR25_Xq21.2"; transcript_id "LTR25_Xq21.2"; locus "LTR25_Xq21.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0148"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "6936"; repStart "-1"; chrX rmsk exon 86317134 86324032 32384 - . gene_id "LTR25_Xq21.2"; transcript_id "LTR25_Xq21.2"; locus "LTR25_Xq21.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0148"; repClass "LTR"; repEnd "6935"; repFamily "ERV1"; repLeft "2"; repStart "-253"; ### HERVL_Xq21.2b ### chrX rmsk gene 86410979 86415039 . - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1319"; model_cov "3519"; model_pct "62.2"; chrX rmsk exon 86410979 86411433 2889 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 86411435 86412678 9645 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "4405"; repStart "-1"; chrX rmsk exon 86412672 86414863 16477 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "3274"; repFamily "ERVL"; repLeft "1053"; repStart "-2380"; chrX rmsk exon 86414847 86414892 267 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "-8"; repFamily "ERVL"; repLeft "-58"; repStart "-5662"; chrX rmsk exon 86414896 86414934 291 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "404"; repStart "-2"; chrX rmsk exon 86414933 86415039 770 - . gene_id "HERVL_Xq21.2b"; transcript_id "HERVL_Xq21.2b"; locus "HERVL_Xq21.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1319"; repClass "LTR"; repEnd "106"; repFamily "ERVL"; repLeft "1"; repStart "-338"; ### HERVL_Xq21.2c ### chrX rmsk gene 86780552 86781707 . - . gene_id "HERVL_Xq21.2c"; transcript_id "HERVL_Xq21.2c"; locus "HERVL_Xq21.2c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1321"; model_cov "1103"; model_pct "19.5"; chrX rmsk exon 86780552 86781646 8625 - . gene_id "HERVL_Xq21.2c"; transcript_id "HERVL_Xq21.2c"; locus "HERVL_Xq21.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1321"; repClass "LTR"; repEnd "1104"; repFamily "ERVL"; repLeft "1"; repStart "-4550"; chrX rmsk exon 86781647 86781707 400 - . gene_id "HERVL_Xq21.2c"; transcript_id "HERVL_Xq21.2c"; locus "HERVL_Xq21.2c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1321"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "377"; repStart "0"; ### ERVLB4_Xq21.2 ### chrX rmsk gene 86861009 86867126 . + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1835"; model_cov "5087"; model_pct "89.0"; chrX rmsk exon 86861009 86862196 27772 + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1835"; repClass "LTR"; repEnd "1796"; repFamily "ERVL"; repLeft "-3918"; repStart "623"; chrX rmsk exon 86862443 86866003 27772 + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1835"; repClass "LTR"; repEnd "5371"; repFamily "ERVL"; repLeft "-343"; repStart "1797"; chrX rmsk exon 86866042 86866369 27772 + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1835"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "5372"; chrX rmsk exon 86866370 86866457 512 + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1835"; repClass "LTR"; repEnd "91"; repFamily "ERVL"; repLeft "-429"; repStart "6"; chrX rmsk exon 86866990 86867126 683 + . gene_id "ERVLB4_Xq21.2"; transcript_id "ERVLB4_Xq21.2"; locus "ERVLB4_Xq21.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1835"; repClass "LTR"; repEnd "216"; repFamily "ERVL"; repLeft "-304"; repStart "80"; ### HERVL_Xq21.2d ### chrX rmsk gene 86871969 86875020 . + . gene_id "HERVL_Xq21.2d"; transcript_id "HERVL_Xq21.2d"; locus "HERVL_Xq21.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1322"; model_cov "2998"; model_pct "53.0"; chrX rmsk exon 86871969 86872047 390 + . gene_id "HERVL_Xq21.2d"; transcript_id "HERVL_Xq21.2d"; locus "HERVL_Xq21.2d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1322"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "367"; chrX rmsk exon 86872049 86875020 22061 + . gene_id "HERVL_Xq21.2d"; transcript_id "HERVL_Xq21.2d"; locus "HERVL_Xq21.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1322"; repClass "LTR"; repEnd "3000"; repFamily "ERVL"; repLeft "-2654"; repStart "2"; ### HERVL_Xq21.2e ### chrX rmsk gene 86900131 86901815 . - . gene_id "HERVL_Xq21.2e"; transcript_id "HERVL_Xq21.2e"; locus "HERVL_Xq21.2e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1323"; model_cov "912"; model_pct "16.1"; chrX rmsk exon 86900131 86901004 6765 - . gene_id "HERVL_Xq21.2e"; transcript_id "HERVL_Xq21.2e"; locus "HERVL_Xq21.2e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1323"; repClass "LTR"; repEnd "914"; repFamily "ERVL"; repLeft "40"; repStart "-4740"; chrX rmsk exon 86901316 86901354 6765 - . gene_id "HERVL_Xq21.2e"; transcript_id "HERVL_Xq21.2e"; locus "HERVL_Xq21.2e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1323"; repClass "LTR"; repEnd "39"; repFamily "ERVL"; repLeft "1"; repStart "-5615"; chrX rmsk exon 86901356 86901418 2796 - . gene_id "HERVL_Xq21.2e"; transcript_id "HERVL_Xq21.2e"; locus "HERVL_Xq21.2e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1323"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "392"; repStart "-1"; chrX rmsk exon 86901446 86901815 2796 - . gene_id "HERVL_Xq21.2e"; transcript_id "HERVL_Xq21.2e"; locus "HERVL_Xq21.2e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1323"; repClass "LTR"; repEnd "391"; repFamily "ERVL"; repLeft "5"; repStart "-53"; ### HERVH_Xq21.2 ### chrX rmsk gene 86981884 86987487 . + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1250"; model_cov "4871"; model_pct "63.2"; chrX rmsk exon 86981884 86982284 2606 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 86982287 86985200 15600 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 86985195 86985342 880 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 86985333 86985839 3349 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 86985846 86986491 4226 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4491"; chrX rmsk exon 86986493 86986708 1336 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 86986709 86987049 2240 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "7681"; repFamily "ERV1"; repLeft "-32"; repStart "7324"; chrX rmsk exon 86987087 86987487 2550 + . gene_id "HERVH_Xq21.2"; transcript_id "HERVH_Xq21.2"; locus "HERVH_Xq21.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1250"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_Xq21.31a ### chrX rmsk gene 87161951 87164931 . - . gene_id "ERV316A3_Xq21.31a"; transcript_id "ERV316A3_Xq21.31a"; locus "ERV316A3_Xq21.31a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2796"; model_cov "2973"; model_pct "56.9"; chrX rmsk exon 87161951 87163480 3859 - . gene_id "ERV316A3_Xq21.31a"; transcript_id "ERV316A3_Xq21.31a"; locus "ERV316A3_Xq21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2796"; repClass "LTR"; repEnd "3389"; repFamily "ERVL"; repLeft "1891"; repStart "-1837"; chrX rmsk exon 87163477 87164931 2640 - . gene_id "ERV316A3_Xq21.31a"; transcript_id "ERV316A3_Xq21.31a"; locus "ERV316A3_Xq21.31a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2796"; repClass "LTR"; repEnd "1679"; repFamily "ERVL"; repLeft "204"; repStart "-3547"; ### ERVLB4_Xq21.31a ### chrX rmsk gene 87165125 87166344 . - . gene_id "ERVLB4_Xq21.31a"; transcript_id "ERVLB4_Xq21.31a"; locus "ERVLB4_Xq21.31a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1836"; model_cov "1224"; model_pct "21.4"; chrX rmsk exon 87165125 87166344 5793 - . gene_id "ERVLB4_Xq21.31a"; transcript_id "ERVLB4_Xq21.31a"; locus "ERVLB4_Xq21.31a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1836"; repClass "LTR"; repEnd "4643"; repFamily "ERVL"; repLeft "3419"; repStart "-1071"; ### HERVL_Xq21.31a ### chrX rmsk gene 87222813 87228706 . + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1324"; model_cov "4918"; model_pct "87.0"; chrX rmsk exon 87222813 87223272 3051 + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1324"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 87223273 87224922 12593 + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1324"; repClass "LTR"; repEnd "1643"; repFamily "ERVL"; repLeft "-4011"; repStart "1"; chrX rmsk exon 87224919 87228183 24775 + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1324"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2378"; chrX rmsk exon 87228188 87228564 3279 + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1324"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "5"; chrX rmsk exon 87228668 87228706 3279 + . gene_id "HERVL_Xq21.31a"; transcript_id "HERVL_Xq21.31a"; locus "HERVL_Xq21.31a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1324"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "404"; ### HERVL_Xq21.31b ### chrX rmsk gene 87237348 87238573 . - . gene_id "HERVL_Xq21.31b"; transcript_id "HERVL_Xq21.31b"; locus "HERVL_Xq21.31b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1325"; model_cov "984"; model_pct "17.4"; chrX rmsk exon 87237348 87237575 1456 - . gene_id "HERVL_Xq21.31b"; transcript_id "HERVL_Xq21.31b"; locus "HERVL_Xq21.31b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1325"; repClass "LTR"; repEnd "242"; repFamily "ERVL"; repLeft "1"; repStart "-202"; chrX rmsk exon 87237576 87238573 7547 - . gene_id "HERVL_Xq21.31b"; transcript_id "HERVL_Xq21.31b"; locus "HERVL_Xq21.31b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1325"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4670"; repStart "0"; ### HERVFRD_Xq21.31a ### chrX rmsk gene 87263957 87265962 . - . gene_id "HERVFRD_Xq21.31a"; transcript_id "HERVFRD_Xq21.31a"; locus "HERVFRD_Xq21.31a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0199"; model_cov "1122"; model_pct "15.6"; chrX rmsk exon 87263957 87264975 2072 - . gene_id "HERVFRD_Xq21.31a"; transcript_id "HERVFRD_Xq21.31a"; locus "HERVFRD_Xq21.31a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0199"; repClass "LTR"; repEnd "1804"; repFamily "ERV1"; repLeft "682"; repStart "-5401"; chrX rmsk exon 87265273 87265697 1168 - . gene_id "HERVFRD_Xq21.31a"; transcript_id "HERVFRD_Xq21.31a"; locus "HERVFRD_Xq21.31a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0199"; repClass "LTR"; repEnd "739"; repFamily "ERV1"; repLeft "287"; repStart "-43"; chrX rmsk exon 87265718 87265962 292 - . gene_id "HERVFRD_Xq21.31a"; transcript_id "HERVFRD_Xq21.31a"; locus "HERVFRD_Xq21.31a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0199"; repClass "LTR"; repEnd "320"; repFamily "ERV1"; repLeft "65"; repStart "-462"; ### MER4_Xq21.31a ### chrX rmsk gene 87314046 87315284 . + . gene_id "MER4_Xq21.31a"; transcript_id "MER4_Xq21.31a"; locus "MER4_Xq21.31a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0870"; model_cov "808"; model_pct "12.2"; chrX rmsk exon 87314046 87314822 4552 + . gene_id "MER4_Xq21.31a"; transcript_id "MER4_Xq21.31a"; locus "MER4_Xq21.31a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0870"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5790"; chrX rmsk exon 87314824 87315284 3135 + . gene_id "MER4_Xq21.31a"; transcript_id "MER4_Xq21.31a"; locus "MER4_Xq21.31a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0870"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq21.31c ### chrX rmsk gene 87349078 87356062 . - . gene_id "HERVL_Xq21.31c"; transcript_id "HERVL_Xq21.31c"; locus "HERVL_Xq21.31c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1326"; model_cov "5646"; model_pct "99.9"; chrX rmsk exon 87349078 87349613 2038 - . gene_id "HERVL_Xq21.31c"; transcript_id "HERVL_Xq21.31c"; locus "HERVL_Xq21.31c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1326"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-96"; repStart "0"; chrX rmsk exon 87349629 87353885 40297 - . gene_id "HERVL_Xq21.31c"; transcript_id "HERVL_Xq21.31c"; locus "HERVL_Xq21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1326"; repClass "LTR"; repEnd "5649"; repFamily "ERVL"; repLeft "1359"; repStart "-5"; chrX rmsk exon 87354179 87355512 40297 - . gene_id "HERVL_Xq21.31c"; transcript_id "HERVL_Xq21.31c"; locus "HERVL_Xq21.31c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1326"; repClass "LTR"; repEnd "1358"; repFamily "ERVL"; repLeft "2"; repStart "-4296"; chrX rmsk exon 87355514 87356062 2107 - . gene_id "HERVL_Xq21.31c"; transcript_id "HERVL_Xq21.31c"; locus "HERVL_Xq21.31c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1326"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### HERVH_Xq21.31a ### chrX rmsk gene 87681680 87687644 . + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1251"; model_cov "5069"; model_pct "65.7"; chrX rmsk exon 87681680 87682129 3559 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 87682132 87685438 20154 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chrX rmsk exon 87685429 87685931 3402 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3492"; chrX rmsk exon 87685931 87686596 4410 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4481"; chrX rmsk exon 87686594 87686815 1359 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chrX rmsk exon 87686814 87687193 2465 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 87687194 87687644 3474 + . gene_id "HERVH_Xq21.31a"; transcript_id "HERVH_Xq21.31a"; locus "HERVH_Xq21.31a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1251"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_Xq21.31a ### chrX rmsk gene 87723851 87728831 . - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0400"; model_cov "4505"; model_pct "86.4"; chrX rmsk exon 87723851 87724010 853 - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0400"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "182"; repStart "0"; chrX rmsk exon 87724012 87727669 24561 - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0400"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1453"; repStart "0"; chrX rmsk exon 87727692 87727734 321 - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0400"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "1320"; repStart "-3855"; chrX rmsk exon 87727774 87728475 3348 - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0400"; repClass "LTR"; repEnd "700"; repFamily "ERV1"; repLeft "1"; repStart "-4517"; chrX rmsk exon 87728476 87728831 1956 - . gene_id "MER61_Xq21.31a"; transcript_id "MER61_Xq21.31a"; locus "MER61_Xq21.31a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0400"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HERV4_Xq21.31a ### chrX rmsk gene 87754475 87756434 . - . gene_id "HERV4_Xq21.31a"; transcript_id "HERV4_Xq21.31a"; locus "HERV4_Xq21.31a"; category "oneside"; intModel "HERV4_I-int"; locid "HERV4_I-int_0144"; model_cov "1062"; model_pct "16.2"; chrX rmsk exon 87754475 87754776 2201 - . gene_id "HERV4_Xq21.31a"; transcript_id "HERV4_Xq21.31a"; locus "HERV4_Xq21.31a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0144"; repClass "LTR"; repEnd "6264"; repFamily "ERV1"; repLeft "5961"; repStart "-275"; chrX rmsk exon 87754783 87755030 1302 - . gene_id "HERV4_Xq21.31a"; transcript_id "HERV4_Xq21.31a"; locus "HERV4_Xq21.31a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0144"; repClass "LTR"; repEnd "-386"; repFamily "ERV1"; repLeft "-623"; repStart "-6925"; chrX rmsk exon 87755378 87755921 2818 - . gene_id "HERV4_Xq21.31a"; transcript_id "HERV4_Xq21.31a"; locus "HERV4_Xq21.31a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0144"; repClass "LTR"; repEnd "-754"; repFamily "ERV1"; repLeft "-1276"; repStart "-7293"; chrX rmsk exon 87755922 87756434 2469 - . gene_id "HERV4_Xq21.31a"; transcript_id "HERV4_Xq21.31a"; locus "HERV4_Xq21.31a"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0144"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq21.31d ### chrX rmsk gene 87876330 87879293 . + . gene_id "HERVL_Xq21.31d"; transcript_id "HERVL_Xq21.31d"; locus "HERVL_Xq21.31d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1327"; model_cov "2990"; model_pct "52.9"; chrX rmsk exon 87876330 87876729 3036 + . gene_id "HERVL_Xq21.31d"; transcript_id "HERVL_Xq21.31d"; locus "HERVL_Xq21.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1327"; repClass "LTR"; repEnd "3015"; repFamily "ERVL"; repLeft "-2639"; repStart "2616"; chrX rmsk exon 87876718 87879293 19565 + . gene_id "HERVL_Xq21.31d"; transcript_id "HERVL_Xq21.31d"; locus "HERVL_Xq21.31d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1327"; repClass "LTR"; repEnd "4369"; repFamily "ERVL"; repLeft "-1285"; repStart "1778"; ### ERVLB4_Xq21.31b ### chrX rmsk gene 87996663 87999924 . + . gene_id "ERVLB4_Xq21.31b"; transcript_id "ERVLB4_Xq21.31b"; locus "ERVLB4_Xq21.31b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1837"; model_cov "3368"; model_pct "58.9"; chrX rmsk exon 87996663 87997551 1640 + . gene_id "ERVLB4_Xq21.31b"; transcript_id "ERVLB4_Xq21.31b"; locus "ERVLB4_Xq21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1837"; repClass "LTR"; repEnd "1018"; repFamily "ERVL"; repLeft "-4696"; repStart "24"; chrX rmsk exon 87997548 87997788 1272 + . gene_id "ERVLB4_Xq21.31b"; transcript_id "ERVLB4_Xq21.31b"; locus "ERVLB4_Xq21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1837"; repClass "LTR"; repEnd "1522"; repFamily "ERVL"; repLeft "-4192"; repStart "1273"; chrX rmsk exon 87997786 87999924 9263 + . gene_id "ERVLB4_Xq21.31b"; transcript_id "ERVLB4_Xq21.31b"; locus "ERVLB4_Xq21.31b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1837"; repClass "LTR"; repEnd "5100"; repFamily "ERVL"; repLeft "-614"; repStart "2975"; ### MER4_Xq21.31b ### chrX rmsk gene 88090670 88093530 . - . gene_id "MER4_Xq21.31b"; transcript_id "MER4_Xq21.31b"; locus "MER4_Xq21.31b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0871"; model_cov "2789"; model_pct "42.3"; chrX rmsk exon 88090670 88091087 2454 - . gene_id "MER4_Xq21.31b"; transcript_id "MER4_Xq21.31b"; locus "MER4_Xq21.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0871"; repClass "LTR"; repEnd "6567"; repFamily "ERV1"; repLeft "6144"; repStart "-31"; chrX rmsk exon 88091088 88092733 8960 - . gene_id "MER4_Xq21.31b"; transcript_id "MER4_Xq21.31b"; locus "MER4_Xq21.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0871"; repClass "LTR"; repEnd "5524"; repFamily "ERV1"; repLeft "3815"; repStart "-1074"; chrX rmsk exon 88092793 88093530 3929 - . gene_id "MER4_Xq21.31b"; transcript_id "MER4_Xq21.31b"; locus "MER4_Xq21.31b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0871"; repClass "LTR"; repEnd "2239"; repFamily "ERV1"; repLeft "1582"; repStart "-4359"; ### LTR57_Xq21.31 ### chrX rmsk gene 88093531 88094740 . - . gene_id "LTR57_Xq21.31"; transcript_id "LTR57_Xq21.31"; locus "LTR57_Xq21.31"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0195"; model_cov "543"; model_pct "10.2"; chrX rmsk exon 88093531 88093660 1652 - . gene_id "LTR57_Xq21.31"; transcript_id "LTR57_Xq21.31"; locus "LTR57_Xq21.31"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0195"; repClass "LTR"; repEnd "1537"; repFamily "ERVL"; repLeft "1394"; repStart "-3806"; chrX rmsk exon 88094365 88094740 1652 - . gene_id "LTR57_Xq21.31"; transcript_id "LTR57_Xq21.31"; locus "LTR57_Xq21.31"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0195"; repClass "LTR"; repEnd "1393"; repFamily "ERVL"; repLeft "993"; repStart "-3950"; ### MER4_Xq21.31c ### chrX rmsk gene 88094741 88098939 . - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0872"; model_cov "2734"; model_pct "41.4"; chrX rmsk exon 88094741 88094923 3929 - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0872"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "1458"; repStart "-4113"; chrX rmsk exon 88097255 88097482 1080 - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0872"; repClass "LTR"; repEnd "1995"; repFamily "ERV1"; repLeft "1756"; repStart "-4603"; chrX rmsk exon 88097492 88098418 4948 - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0872"; repClass "LTR"; repEnd "1035"; repFamily "ERV1"; repLeft "29"; repStart "-5563"; chrX rmsk exon 88098418 88098786 1292 - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0872"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2112"; repStart "-4107"; chrX rmsk exon 88098853 88098939 390 - . gene_id "MER4_Xq21.31c"; transcript_id "MER4_Xq21.31c"; locus "MER4_Xq21.31c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0872"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; ### HERVL_Xq21.31e ### chrX rmsk gene 88156061 88160307 . + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1328"; model_cov "2868"; model_pct "50.7"; chrX rmsk exon 88156061 88156611 2114 + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1328"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "-109"; chrX rmsk exon 88156612 88157258 12673 + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1328"; repClass "LTR"; repEnd "626"; repFamily "ERVL"; repLeft "-5028"; repStart "1"; chrX rmsk exon 88157552 88158794 12673 + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1328"; repClass "LTR"; repEnd "1884"; repFamily "ERVL"; repLeft "-3770"; repStart "627"; chrX rmsk exon 88158791 88159769 7086 + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1328"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4668"; chrX rmsk exon 88159770 88160307 1890 + . gene_id "HERVL_Xq21.31e"; transcript_id "HERVL_Xq21.31e"; locus "HERVL_Xq21.31e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1328"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-8"; repStart "-100"; ### ERVLB4_Xq21.31c ### chrX rmsk gene 88216128 88225984 . + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1838"; model_cov "5431"; model_pct "95.0"; chrX rmsk exon 88216128 88216564 1778 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "489"; repFamily "ERVL"; repLeft "-67"; repStart "3"; chrX rmsk exon 88216613 88216673 1778 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "490"; chrX rmsk exon 88216674 88217690 4735 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "1042"; repFamily "ERVL"; repLeft "-4672"; repStart "1"; chrX rmsk exon 88217693 88219758 18812 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "3405"; repFamily "ERVL"; repLeft "-2309"; repStart "1307"; chrX rmsk exon 88220146 88221306 18812 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "4560"; repFamily "ERVL"; repLeft "-1154"; repStart "3406"; chrX rmsk exon 88221705 88221911 18812 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "4777"; repFamily "ERVL"; repLeft "-937"; repStart "4561"; chrX rmsk exon 88222326 88222404 431 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "4934"; repFamily "ERVL"; repLeft "-780"; repStart "4856"; chrX rmsk exon 88222553 88223186 3011 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "5497"; repFamily "ERVL"; repLeft "-217"; repStart "4876"; chrX rmsk exon 88225201 88225423 1098 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5491"; chrX rmsk exon 88225424 88225899 2145 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "505"; repFamily "ERVL"; repLeft "-51"; repStart "1"; chrX rmsk exon 88225933 88225984 2145 + . gene_id "ERVLB4_Xq21.31c"; transcript_id "ERVLB4_Xq21.31c"; locus "ERVLB4_Xq21.31c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1838"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "506"; ### ERV316A3_Xq21.31b ### chrX rmsk gene 88298304 88301775 . - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2797"; model_cov "2036"; model_pct "39.0"; chrX rmsk exon 88298304 88299206 3697 - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2797"; repClass "LTR"; repEnd "3086"; repFamily "ERVL"; repLeft "2189"; repStart "-2140"; chrX rmsk exon 88299925 88300064 3697 - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2797"; repClass "LTR"; repEnd "2188"; repFamily "ERVL"; repLeft "2044"; repStart "-3038"; chrX rmsk exon 88300376 88300802 3697 - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2797"; repClass "LTR"; repEnd "2043"; repFamily "ERVL"; repLeft "1643"; repStart "-3183"; chrX rmsk exon 88300914 88301524 1187 - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2797"; repClass "LTR"; repEnd "622"; repFamily "ERVL"; repLeft "27"; repStart "-4604"; chrX rmsk exon 88301621 88301775 460 - . gene_id "ERV316A3_Xq21.31b"; transcript_id "ERV316A3_Xq21.31b"; locus "ERV316A3_Xq21.31b"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2797"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "210"; repStart "-99"; ### MER4_Xq21.31d ### chrX rmsk gene 88464223 88470833 . + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0875"; model_cov "4299"; model_pct "65.2"; chrX rmsk exon 88464223 88464626 2483 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0875"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "55"; chrX rmsk exon 88464632 88465161 2218 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "-6018"; repStart "3"; chrX rmsk exon 88465177 88465526 1657 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "2388"; repFamily "ERV1"; repLeft "-4210"; repStart "2100"; chrX rmsk exon 88465524 88465943 4200 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "2247"; repFamily "ERV1"; repLeft "-4351"; repStart "1803"; chrX rmsk exon 88466270 88466541 4200 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "-4078"; repStart "2248"; chrX rmsk exon 88466756 88467245 15364 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "3958"; repFamily "ERV1"; repLeft "-2640"; repStart "3877"; chrX rmsk exon 88467545 88469361 15364 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "5834"; repFamily "ERV1"; repLeft "-764"; repStart "3959"; chrX rmsk exon 88469661 88470395 15364 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0875"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "5835"; chrX rmsk exon 88470428 88470833 2339 + . gene_id "MER4_Xq21.31d"; transcript_id "MER4_Xq21.31d"; locus "MER4_Xq21.31d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0875"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "55"; ### HERVL74_Xq21.31a ### chrX rmsk gene 88567534 88568183 . + . gene_id "HERVL74_Xq21.31a"; transcript_id "HERVL74_Xq21.31a"; locus "HERVL74_Xq21.31a"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0141"; model_cov "664"; model_pct "11.7"; chrX rmsk exon 88567534 88568183 2551 + . gene_id "HERVL74_Xq21.31a"; transcript_id "HERVL74_Xq21.31a"; locus "HERVL74_Xq21.31a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0141"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "-2452"; repStart "2569"; ### HERVL74_Xq21.31b ### chrX rmsk gene 88568286 88568974 . + . gene_id "HERVL74_Xq21.31b"; transcript_id "HERVL74_Xq21.31b"; locus "HERVL74_Xq21.31b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0142"; model_cov "697"; model_pct "12.3"; chrX rmsk exon 88568286 88568974 3202 + . gene_id "HERVL74_Xq21.31b"; transcript_id "HERVL74_Xq21.31b"; locus "HERVL74_Xq21.31b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0142"; repClass "LTR"; repEnd "1988"; repFamily "ERVL"; repLeft "-3697"; repStart "1291"; ### MER61_Xq21.31b ### chrX rmsk gene 88605061 88605986 . + . gene_id "MER61_Xq21.31b"; transcript_id "MER61_Xq21.31b"; locus "MER61_Xq21.31b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0401"; model_cov "525"; model_pct "10.1"; chrX rmsk exon 88605061 88605397 1591 + . gene_id "MER61_Xq21.31b"; transcript_id "MER61_Xq21.31b"; locus "MER61_Xq21.31b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0401"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 88605398 88605580 728 + . gene_id "MER61_Xq21.31b"; transcript_id "MER61_Xq21.31b"; locus "MER61_Xq21.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0401"; repClass "LTR"; repEnd "178"; repFamily "ERV1"; repLeft "-5039"; repStart "2"; chrX rmsk exon 88605587 88605986 1783 + . gene_id "MER61_Xq21.31b"; transcript_id "MER61_Xq21.31b"; locus "MER61_Xq21.31b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0401"; repClass "LTR"; repEnd "-1119"; repFamily "ERV1"; repLeft "-6336"; repStart "-1468"; ### MER61_Xq21.31c ### chrX rmsk gene 88769225 88771011 . + . gene_id "MER61_Xq21.31c"; transcript_id "MER61_Xq21.31c"; locus "MER61_Xq21.31c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0402"; model_cov "1813"; model_pct "34.8"; chrX rmsk exon 88769225 88771011 11882 + . gene_id "MER61_Xq21.31c"; transcript_id "MER61_Xq21.31c"; locus "MER61_Xq21.31c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0402"; repClass "LTR"; repEnd "4818"; repFamily "ERV1"; repLeft "-399"; repStart "3005"; ### HERVL_Xq21.31f ### chrX rmsk gene 88830991 88833589 . - . gene_id "HERVL_Xq21.31f"; transcript_id "HERVL_Xq21.31f"; locus "HERVL_Xq21.31f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1329"; model_cov "2171"; model_pct "38.4"; chrX rmsk exon 88830991 88833143 16786 - . gene_id "HERVL_Xq21.31f"; transcript_id "HERVL_Xq21.31f"; locus "HERVL_Xq21.31f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1329"; repClass "LTR"; repEnd "2172"; repFamily "ERVL"; repLeft "1"; repStart "-3482"; chrX rmsk exon 88833144 88833589 3401 - . gene_id "HERVL_Xq21.31f"; transcript_id "HERVL_Xq21.31f"; locus "HERVL_Xq21.31f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1329"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HML1_Xq21.31 ### chrX rmsk gene 88842310 88848834 . - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0125"; model_cov "5877"; model_pct "96.4"; chrX rmsk exon 88842310 88842667 1878 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "193"; repStart "0"; chrX rmsk exon 88842642 88842703 366 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "60"; repFamily "ERVK"; repLeft "1"; repStart "-548"; chrX rmsk exon 88842707 88842781 388 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "6032"; repStart "0"; chrX rmsk exon 88842779 88842991 1693 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "5928"; repFamily "ERVK"; repLeft "5715"; repStart "-168"; chrX rmsk exon 88842993 88848431 40555 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "5601"; repFamily "ERVK"; repLeft "1"; repStart "-495"; chrX rmsk exon 88848432 88848834 2106 - . gene_id "HML1_Xq21.31"; transcript_id "HML1_Xq21.31"; locus "HML1_Xq21.31"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0125"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### PABLA_Xq21.31a ### chrX rmsk gene 88938848 88941405 . - . gene_id "PABLA_Xq21.31a"; transcript_id "PABLA_Xq21.31a"; locus "PABLA_Xq21.31a"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0163"; model_cov "3966"; model_pct "79.1"; chrX rmsk exon 88938848 88941405 6153 - . gene_id "PABLA_Xq21.31a"; transcript_id "PABLA_Xq21.31a"; locus "PABLA_Xq21.31a"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0163"; repClass "LTR"; repEnd "1166"; repFamily "ERV1"; repLeft "-2800"; repStart "-3849"; ### MER4_Xq21.31e ### chrX rmsk gene 88982498 88984199 . - . gene_id "MER4_Xq21.31e"; transcript_id "MER4_Xq21.31e"; locus "MER4_Xq21.31e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0876"; model_cov "1549"; model_pct "23.5"; chrX rmsk exon 88982498 88983934 5389 - . gene_id "MER4_Xq21.31e"; transcript_id "MER4_Xq21.31e"; locus "MER4_Xq21.31e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0876"; repClass "LTR"; repEnd "1550"; repFamily "ERV1"; repLeft "1"; repStart "-5048"; chrX rmsk exon 88983938 88984199 1743 - . gene_id "MER4_Xq21.31e"; transcript_id "MER4_Xq21.31e"; locus "MER4_Xq21.31e"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0876"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "408"; repStart "0"; ### MER4_Xq21.31f ### chrX rmsk gene 88984585 88985972 . + . gene_id "MER4_Xq21.31f"; transcript_id "MER4_Xq21.31f"; locus "MER4_Xq21.31f"; category "internal"; intModel "MER4-int"; locid "MER4-int_0877"; model_cov "1171"; model_pct "17.7"; chrX rmsk exon 88984585 88985972 3866 + . gene_id "MER4_Xq21.31f"; transcript_id "MER4_Xq21.31f"; locus "MER4_Xq21.31f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0877"; repClass "LTR"; repEnd "2513"; repFamily "ERV1"; repLeft "-4085"; repStart "1342"; ### MER4_Xq21.31g ### chrX rmsk gene 88986493 88990433 . + . gene_id "MER4_Xq21.31g"; transcript_id "MER4_Xq21.31g"; locus "MER4_Xq21.31g"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0878"; model_cov "3009"; model_pct "45.6"; chrX rmsk exon 88986493 88986927 2781 + . gene_id "MER4_Xq21.31g"; transcript_id "MER4_Xq21.31g"; locus "MER4_Xq21.31g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0878"; repClass "LTR"; repEnd "2254"; repFamily "ERV1"; repLeft "-4344"; repStart "2005"; chrX rmsk exon 88986927 88987287 13667 + . gene_id "MER4_Xq21.31g"; transcript_id "MER4_Xq21.31g"; locus "MER4_Xq21.31g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0878"; repClass "LTR"; repEnd "4172"; repFamily "ERV1"; repLeft "-2426"; repStart "3837"; chrX rmsk exon 88987600 88989983 13667 + . gene_id "MER4_Xq21.31g"; transcript_id "MER4_Xq21.31g"; locus "MER4_Xq21.31g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0878"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4173"; chrX rmsk exon 88989985 88990433 2964 + . gene_id "MER4_Xq21.31g"; transcript_id "MER4_Xq21.31g"; locus "MER4_Xq21.31g"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0878"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_Xq21.31a ### chrX rmsk gene 89093097 89094054 . + . gene_id "ERVLE_Xq21.31a"; transcript_id "ERVLE_Xq21.31a"; locus "ERVLE_Xq21.31a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3684"; model_cov "926"; model_pct "16.3"; chrX rmsk exon 89093097 89093446 914 + . gene_id "ERVLE_Xq21.31a"; transcript_id "ERVLE_Xq21.31a"; locus "ERVLE_Xq21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3684"; repClass "LTR"; repEnd "2337"; repFamily "ERVL"; repLeft "-3330"; repStart "1978"; chrX rmsk exon 89093485 89093598 381 + . gene_id "ERVLE_Xq21.31a"; transcript_id "ERVLE_Xq21.31a"; locus "ERVLE_Xq21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3684"; repClass "LTR"; repEnd "3359"; repFamily "ERVL"; repLeft "-2308"; repStart "3245"; chrX rmsk exon 89093610 89094054 1398 + . gene_id "ERVLE_Xq21.31a"; transcript_id "ERVLE_Xq21.31a"; locus "ERVLE_Xq21.31a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3684"; repClass "LTR"; repEnd "3875"; repFamily "ERVL"; repLeft "-1792"; repStart "3422"; ### ERVLB4_Xq21.31d ### chrX rmsk gene 89103169 89103747 . + . gene_id "ERVLB4_Xq21.31d"; transcript_id "ERVLB4_Xq21.31d"; locus "ERVLB4_Xq21.31d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1839"; model_cov "588"; model_pct "10.3"; chrX rmsk exon 89103169 89103747 945 + . gene_id "ERVLB4_Xq21.31d"; transcript_id "ERVLB4_Xq21.31d"; locus "ERVLB4_Xq21.31d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1839"; repClass "LTR"; repEnd "2576"; repFamily "ERVL"; repLeft "-3138"; repStart "1988"; ### MER61_Xq21.31d ### chrX rmsk gene 89266094 89271822 . - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0405"; model_cov "4189"; model_pct "80.3"; chrX rmsk exon 89266094 89266423 1922 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0405"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 89266739 89269059 24089 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0405"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "2849"; repStart "-11"; chrX rmsk exon 89269744 89270911 24089 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0405"; repClass "LTR"; repEnd "2579"; repFamily "ERV1"; repLeft "1320"; repStart "-2638"; chrX rmsk exon 89270939 89271015 338 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0405"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "631"; repStart "-4510"; chrX rmsk exon 89271086 89271528 1242 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0405"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-4719"; chrX rmsk exon 89271529 89271822 1420 - . gene_id "MER61_Xq21.31d"; transcript_id "MER61_Xq21.31d"; locus "MER61_Xq21.31d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0405"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "7"; repStart "0"; ### ERVLE_Xq21.31b ### chrX rmsk gene 89338206 89341135 . - . gene_id "ERVLE_Xq21.31b"; transcript_id "ERVLE_Xq21.31b"; locus "ERVLE_Xq21.31b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3685"; model_cov "2957"; model_pct "52.2"; chrX rmsk exon 89338206 89341135 11448 - . gene_id "ERVLE_Xq21.31b"; transcript_id "ERVLE_Xq21.31b"; locus "ERVLE_Xq21.31b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3685"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "2708"; repStart "-2"; ### ERVLE_Xq21.31c ### chrX rmsk gene 89368011 89369635 . + . gene_id "ERVLE_Xq21.31c"; transcript_id "ERVLE_Xq21.31c"; locus "ERVLE_Xq21.31c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3686"; model_cov "1725"; model_pct "30.4"; chrX rmsk exon 89368011 89369635 1825 + . gene_id "ERVLE_Xq21.31c"; transcript_id "ERVLE_Xq21.31c"; locus "ERVLE_Xq21.31c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3686"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "-403"; repStart "3539"; ### HERVL_Xq21.31g ### chrX rmsk gene 89480945 89481630 . + . gene_id "HERVL_Xq21.31g"; transcript_id "HERVL_Xq21.31g"; locus "HERVL_Xq21.31g"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1331"; model_cov "650"; model_pct "11.5"; chrX rmsk exon 89480945 89481571 4300 + . gene_id "HERVL_Xq21.31g"; transcript_id "HERVL_Xq21.31g"; locus "HERVL_Xq21.31g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1331"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5004"; chrX rmsk exon 89481572 89481630 440 + . gene_id "HERVL_Xq21.31g"; transcript_id "HERVL_Xq21.31g"; locus "HERVL_Xq21.31g"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1331"; repClass "LTR"; repEnd "59"; repFamily "ERVL"; repLeft "-394"; repStart "1"; ### PABLA_Xq21.31b ### chrX rmsk gene 89528321 89532877 . - . gene_id "PABLA_Xq21.31b"; transcript_id "PABLA_Xq21.31b"; locus "PABLA_Xq21.31b"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0164"; model_cov "4514"; model_pct "90.0"; chrX rmsk exon 89528321 89528620 1894 - . gene_id "PABLA_Xq21.31b"; transcript_id "PABLA_Xq21.31b"; locus "PABLA_Xq21.31b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0164"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4707"; repStart "-2"; chrX rmsk exon 89528618 89531371 10100 - . gene_id "PABLA_Xq21.31b"; transcript_id "PABLA_Xq21.31b"; locus "PABLA_Xq21.31b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0164"; repClass "LTR"; repEnd "2530"; repFamily "ERV1"; repLeft "-236"; repStart "-2485"; chrX rmsk exon 89531371 89531484 674 - . gene_id "PABLA_Xq21.31b"; transcript_id "PABLA_Xq21.31b"; locus "PABLA_Xq21.31b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0164"; repClass "LTR"; repEnd "1083"; repFamily "ERV1"; repLeft "970"; repStart "-3932"; chrX rmsk exon 89531487 89532877 5296 - . gene_id "PABLA_Xq21.31b"; transcript_id "PABLA_Xq21.31b"; locus "PABLA_Xq21.31b"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0164"; repClass "LTR"; repEnd "400"; repFamily "ERV1"; repLeft "-929"; repStart "-4615"; ### ERVLB4_Xq21.31e ### chrX rmsk gene 89547985 89550097 . - . gene_id "ERVLB4_Xq21.31e"; transcript_id "ERVLB4_Xq21.31e"; locus "ERVLB4_Xq21.31e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1840"; model_cov "1376"; model_pct "24.1"; chrX rmsk exon 89547985 89548409 1736 - . gene_id "ERVLB4_Xq21.31e"; transcript_id "ERVLB4_Xq21.31e"; locus "ERVLB4_Xq21.31e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1840"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 89548410 89548861 6318 - . gene_id "ERVLB4_Xq21.31e"; transcript_id "ERVLB4_Xq21.31e"; locus "ERVLB4_Xq21.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1840"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5298"; repStart "0"; chrX rmsk exon 89549160 89550097 6318 - . gene_id "ERVLB4_Xq21.31e"; transcript_id "ERVLB4_Xq21.31e"; locus "ERVLB4_Xq21.31e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1840"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4337"; repStart "-417"; ### ERVLB4_Xq21.31f ### chrX rmsk gene 89550111 89554105 . + . gene_id "ERVLB4_Xq21.31f"; transcript_id "ERVLB4_Xq21.31f"; locus "ERVLB4_Xq21.31f"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1841"; model_cov "3486"; model_pct "61.0"; chrX rmsk exon 89550111 89550395 12295 + . gene_id "ERVLB4_Xq21.31f"; transcript_id "ERVLB4_Xq21.31f"; locus "ERVLB4_Xq21.31f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1841"; repClass "LTR"; repEnd "426"; repFamily "ERVL"; repLeft "-5288"; repStart "114"; chrX rmsk exon 89550451 89552086 12295 + . gene_id "ERVLB4_Xq21.31f"; transcript_id "ERVLB4_Xq21.31f"; locus "ERVLB4_Xq21.31f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1841"; repClass "LTR"; repEnd "2228"; repFamily "ERVL"; repLeft "-3486"; repStart "427"; chrX rmsk exon 89552448 89552478 12295 + . gene_id "ERVLB4_Xq21.31f"; transcript_id "ERVLB4_Xq21.31f"; locus "ERVLB4_Xq21.31f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1841"; repClass "LTR"; repEnd "2264"; repFamily "ERVL"; repLeft "-3450"; repStart "2229"; chrX rmsk exon 89552788 89554105 12295 + . gene_id "ERVLB4_Xq21.31f"; transcript_id "ERVLB4_Xq21.31f"; locus "ERVLB4_Xq21.31f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1841"; repClass "LTR"; repEnd "3603"; repFamily "ERVL"; repLeft "-2111"; repStart "2265"; ### MER34B_Xq21.31 ### chrX rmsk gene 89554588 89556238 . + . gene_id "MER34B_Xq21.31"; transcript_id "MER34B_Xq21.31"; locus "MER34B_Xq21.31"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0284"; model_cov "1268"; model_pct "23.7"; chrX rmsk exon 89554588 89555187 1659 + . gene_id "MER34B_Xq21.31"; transcript_id "MER34B_Xq21.31"; locus "MER34B_Xq21.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0284"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "-4696"; repStart "80"; chrX rmsk exon 89555500 89555840 1159 + . gene_id "MER34B_Xq21.31"; transcript_id "MER34B_Xq21.31"; locus "MER34B_Xq21.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0284"; repClass "LTR"; repEnd "923"; repFamily "ERV1"; repLeft "-4433"; repStart "557"; chrX rmsk exon 89555920 89556238 1169 + . gene_id "MER34B_Xq21.31"; transcript_id "MER34B_Xq21.31"; locus "MER34B_Xq21.31"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0284"; repClass "LTR"; repEnd "1255"; repFamily "ERV1"; repLeft "-4101"; repStart "933"; ### HERV3_Xq21.31 ### chrX rmsk gene 89579057 89587397 . - . gene_id "HERV3_Xq21.31"; transcript_id "HERV3_Xq21.31"; locus "HERV3_Xq21.31"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0082"; model_cov "7976"; model_pct "94.7"; chrX rmsk exon 89579057 89584999 36860 - . gene_id "HERV3_Xq21.31"; transcript_id "HERV3_Xq21.31"; locus "HERV3_Xq21.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0082"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "1754"; repStart "-696"; chrX rmsk exon 89585000 89585107 694 - . gene_id "HERV3_Xq21.31"; transcript_id "HERV3_Xq21.31"; locus "HERV3_Xq21.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0082"; repClass "LTR"; repEnd "1861"; repFamily "ERV1"; repLeft "1754"; repStart "-6565"; chrX rmsk exon 89585083 89586990 10851 - . gene_id "HERV3_Xq21.31"; transcript_id "HERV3_Xq21.31"; locus "HERV3_Xq21.31"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0082"; repClass "LTR"; repEnd "1895"; repFamily "ERV1"; repLeft "2"; repStart "-6531"; chrX rmsk exon 89586991 89587397 1287 - . gene_id "HERV3_Xq21.31"; transcript_id "HERV3_Xq21.31"; locus "HERV3_Xq21.31"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0082"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "214"; repStart "0"; ### MER4B_Xq21.31a ### chrX rmsk gene 89751649 89753656 . - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0518"; model_cov "1167"; model_pct "17.3"; chrX rmsk exon 89751649 89751843 563 - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0518"; repClass "LTR"; repEnd "2507"; repFamily "ERV1"; repLeft "2295"; repStart "-4251"; chrX rmsk exon 89751937 89752070 835 - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0518"; repClass "LTR"; repEnd "1060"; repFamily "ERV1"; repLeft "924"; repStart "-5698"; chrX rmsk exon 89752100 89752714 3355 - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0518"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "225"; repStart "-5917"; chrX rmsk exon 89752840 89753042 1350 - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0518"; repClass "LTR"; repEnd "204"; repFamily "ERV1"; repLeft "1"; repStart "-6554"; chrX rmsk exon 89753043 89753656 3240 - . gene_id "MER4B_Xq21.31a"; transcript_id "MER4B_Xq21.31a"; locus "MER4B_Xq21.31a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0518"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-287"; repStart "0"; ### HUERSP3_Xq21.31 ### chrX rmsk gene 89757074 89763097 . - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0229"; model_cov "4543"; model_pct "50.9"; chrX rmsk exon 89757074 89757601 2228 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "1"; repStart "-92"; chrX rmsk exon 89757602 89757866 1430 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chrX rmsk exon 89758346 89758460 499 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6872"; repStart "-1934"; chrX rmsk exon 89758469 89759103 3493 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6273"; repStart "-2007"; chrX rmsk exon 89759095 89759344 1549 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "5166"; repFamily "ERV1"; repLeft "4901"; repStart "-3753"; chrX rmsk exon 89759346 89759477 736 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chrX rmsk exon 89759471 89761837 9149 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "752"; repStart "-5635"; chrX rmsk exon 89761866 89762490 2851 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "-8285"; chrX rmsk exon 89762491 89763097 2739 - . gene_id "HUERSP3_Xq21.31"; transcript_id "HUERSP3_Xq21.31"; locus "HUERSP3_Xq21.31"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0229"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "7"; repStart "0"; ### ERVLB4_Xq21.31g ### chrX rmsk gene 89777981 89779509 . + . gene_id "ERVLB4_Xq21.31g"; transcript_id "ERVLB4_Xq21.31g"; locus "ERVLB4_Xq21.31g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1842"; model_cov "1510"; model_pct "26.4"; chrX rmsk exon 89777981 89779509 7792 + . gene_id "ERVLB4_Xq21.31g"; transcript_id "ERVLB4_Xq21.31g"; locus "ERVLB4_Xq21.31g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1842"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "-3823"; repStart "381"; ### ERVLB4_Xq21.31h ### chrX rmsk gene 89801570 89803504 . - . gene_id "ERVLB4_Xq21.31h"; transcript_id "ERVLB4_Xq21.31h"; locus "ERVLB4_Xq21.31h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1843"; model_cov "1501"; model_pct "26.3"; chrX rmsk exon 89801570 89802050 1925 - . gene_id "ERVLB4_Xq21.31h"; transcript_id "ERVLB4_Xq21.31h"; locus "ERVLB4_Xq21.31h"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1843"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "3"; repStart "-1"; chrX rmsk exon 89802053 89803504 7892 - . gene_id "ERVLB4_Xq21.31h"; transcript_id "ERVLB4_Xq21.31h"; locus "ERVLB4_Xq21.31h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1843"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4213"; repStart "0"; ### ERVL_Xq21.31a ### chrX rmsk gene 89803507 89806220 . - . gene_id "ERVL_Xq21.31a"; transcript_id "ERVL_Xq21.31a"; locus "ERVL_Xq21.31a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0486"; model_cov "1853"; model_pct "32.2"; chrX rmsk exon 89803507 89805056 7342 - . gene_id "ERVL_Xq21.31a"; transcript_id "ERVL_Xq21.31a"; locus "ERVL_Xq21.31a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0486"; repClass "LTR"; repEnd "1918"; repFamily "ERVL"; repLeft "385"; repStart "-3839"; chrX rmsk exon 89805384 89805702 1434 - . gene_id "ERVL_Xq21.31a"; transcript_id "ERVL_Xq21.31a"; locus "ERVL_Xq21.31a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0486"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "44"; repStart "-5393"; chrX rmsk exon 89805703 89806220 1779 - . gene_id "ERVL_Xq21.31a"; transcript_id "ERVL_Xq21.31a"; locus "ERVL_Xq21.31a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0486"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_Xq21.31b ### chrX rmsk gene 89900791 89902258 . + . gene_id "ERVL_Xq21.31b"; transcript_id "ERVL_Xq21.31b"; locus "ERVL_Xq21.31b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0487"; model_cov "989"; model_pct "17.2"; chrX rmsk exon 89900791 89901751 4801 + . gene_id "ERVL_Xq21.31b"; transcript_id "ERVL_Xq21.31b"; locus "ERVL_Xq21.31b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0487"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4768"; chrX rmsk exon 89901752 89902258 2296 + . gene_id "ERVL_Xq21.31b"; transcript_id "ERVL_Xq21.31b"; locus "ERVL_Xq21.31b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0487"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### MER4_Xq21.31h ### chrX rmsk gene 89951506 89953524 . + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0879"; model_cov "1970"; model_pct "29.9"; chrX rmsk exon 89951506 89951969 3077 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0879"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 89951973 89952288 3108 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0879"; repClass "LTR"; repEnd "360"; repFamily "ERV1"; repLeft "-6238"; repStart "1"; chrX rmsk exon 89952318 89952589 3108 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0879"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "-5938"; repStart "361"; chrX rmsk exon 89952577 89952974 1683 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0879"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "504"; chrX rmsk exon 89952968 89953472 3166 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0879"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4241"; repStart "1809"; chrX rmsk exon 89953473 89953524 293 + . gene_id "MER4_Xq21.31h"; transcript_id "MER4_Xq21.31h"; locus "MER4_Xq21.31h"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0879"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "-4"; repStart "416"; ### HERVFRD_Xq21.31b ### chrX rmsk gene 89974209 89978766 . + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0201"; model_cov "3311"; model_pct "46.0"; chrX rmsk exon 89974209 89974589 2482 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0201"; repClass "LTR"; repEnd "679"; repFamily "ERV1"; repLeft "-103"; repStart "303"; chrX rmsk exon 89975116 89975179 2482 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0201"; repClass "LTR"; repEnd "737"; repFamily "ERV1"; repLeft "-45"; repStart "680"; chrX rmsk exon 89975205 89975310 393 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0201"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "-7080"; repStart "18"; chrX rmsk exon 89975374 89977165 6172 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0201"; repClass "LTR"; repEnd "1843"; repFamily "ERV1"; repLeft "-5362"; repStart "97"; chrX rmsk exon 89977165 89977659 2789 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0201"; repClass "LTR"; repEnd "3784"; repFamily "ERV1"; repLeft "-3421"; repStart "3329"; chrX rmsk exon 89977957 89978766 3024 + . gene_id "HERVFRD_Xq21.31b"; transcript_id "HERVFRD_Xq21.31b"; locus "HERVFRD_Xq21.31b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0201"; repClass "LTR"; repEnd "6719"; repFamily "ERV1"; repLeft "-486"; repStart "5716"; ### ERVLB4_Xq21.31i ### chrX rmsk gene 89984873 89985950 . + . gene_id "ERVLB4_Xq21.31i"; transcript_id "ERVLB4_Xq21.31i"; locus "ERVLB4_Xq21.31i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1844"; model_cov "1085"; model_pct "19.0"; chrX rmsk exon 89984873 89984978 526 + . gene_id "ERVLB4_Xq21.31i"; transcript_id "ERVLB4_Xq21.31i"; locus "ERVLB4_Xq21.31i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1844"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "-2326"; repStart "3282"; chrX rmsk exon 89984991 89985950 4931 + . gene_id "ERVLB4_Xq21.31i"; transcript_id "ERVLB4_Xq21.31i"; locus "ERVLB4_Xq21.31i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1844"; repClass "LTR"; repEnd "4459"; repFamily "ERVL"; repLeft "-1255"; repStart "3480"; ### ERVLB4_Xq21.31j ### chrX rmsk gene 89993171 89994188 . + . gene_id "ERVLB4_Xq21.31j"; transcript_id "ERVLB4_Xq21.31j"; locus "ERVLB4_Xq21.31j"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1845"; model_cov "592"; model_pct "10.4"; chrX rmsk exon 89993171 89993744 2054 + . gene_id "ERVLB4_Xq21.31j"; transcript_id "ERVLB4_Xq21.31j"; locus "ERVLB4_Xq21.31j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1845"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5122"; chrX rmsk exon 89993754 89994188 1742 + . gene_id "ERVLB4_Xq21.31j"; transcript_id "ERVLB4_Xq21.31j"; locus "ERVLB4_Xq21.31j"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1845"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-2"; repStart "11"; ### MER4B_Xq21.31b ### chrX rmsk gene 90078962 90083419 . + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0519"; model_cov "2897"; model_pct "42.9"; chrX rmsk exon 90078962 90079512 3069 + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0519"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "1"; chrX rmsk exon 90079544 90080342 2757 + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0519"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-5916"; repStart "1"; chrX rmsk exon 90080371 90080696 1321 + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0519"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "-5357"; repStart "1084"; chrX rmsk exon 90081510 90082184 4495 + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0519"; repClass "LTR"; repEnd "2214"; repFamily "ERV1"; repLeft "-4544"; repStart "1570"; chrX rmsk exon 90082223 90083419 5048 + . gene_id "MER4B_Xq21.31b"; transcript_id "MER4B_Xq21.31b"; locus "MER4B_Xq21.31b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0519"; repClass "LTR"; repEnd "2511"; repFamily "ERV1"; repLeft "-4247"; repStart "1416"; ### MER61_Xq21.31e ### chrX rmsk gene 90083420 90089317 . - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0406"; model_cov "4736"; model_pct "90.8"; chrX rmsk exon 90083420 90083755 1411 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0406"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 90083756 90083796 25488 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0406"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "5162"; repStart "0"; chrX rmsk exon 90083841 90087769 25488 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0406"; repClass "LTR"; repEnd "5161"; repFamily "ERV1"; repLeft "1224"; repStart "-56"; chrX rmsk exon 90087766 90088369 2540 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0406"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "364"; repStart "-4377"; chrX rmsk exon 90088402 90088458 1106 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0406"; repClass "LTR"; repEnd "271"; repFamily "ERV1"; repLeft "215"; repStart "-4946"; chrX rmsk exon 90088804 90088992 1106 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0406"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "2"; repStart "-5003"; chrX rmsk exon 90088993 90089317 1515 - . gene_id "MER61_Xq21.31e"; transcript_id "MER61_Xq21.31e"; locus "MER61_Xq21.31e"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0406"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### MER4B_Xq21.31c ### chrX rmsk gene 90089318 90093340 . + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0520"; model_cov "3476"; model_pct "51.4"; chrX rmsk exon 90089318 90089902 2959 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "3095"; repFamily "ERV1"; repLeft "-3663"; repStart "2507"; chrX rmsk exon 90089889 90090088 4008 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "3630"; repFamily "ERV1"; repLeft "-3128"; repStart "3421"; chrX rmsk exon 90090134 90090662 4008 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "4187"; repFamily "ERV1"; repLeft "-2571"; repStart "3631"; chrX rmsk exon 90090662 90091085 5462 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "4792"; repFamily "ERV1"; repLeft "-1966"; repStart "4321"; chrX rmsk exon 90091161 90091827 5462 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "5536"; repFamily "ERV1"; repLeft "-1222"; repStart "4793"; chrX rmsk exon 90091828 90092345 3115 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "6272"; repFamily "ERV1"; repLeft "-486"; repStart "5736"; chrX rmsk exon 90092384 90092762 2579 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "6754"; repFamily "ERV1"; repLeft "-4"; repStart "6381"; chrX rmsk exon 90092765 90093340 2788 + . gene_id "MER4B_Xq21.31c"; transcript_id "MER4B_Xq21.31c"; locus "MER4B_Xq21.31c"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0520"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "-155"; ### ERVL_Xq21.31c ### chrX rmsk gene 90202353 90205748 . - . gene_id "ERVL_Xq21.31c"; transcript_id "ERVL_Xq21.31c"; locus "ERVL_Xq21.31c"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0488"; model_cov "1860"; model_pct "32.3"; chrX rmsk exon 90202353 90202936 2999 - . gene_id "ERVL_Xq21.31c"; transcript_id "ERVL_Xq21.31c"; locus "ERVL_Xq21.31c"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0488"; repClass "LTR"; repEnd "651"; repFamily "ERVL"; repLeft "1"; repStart "-66"; chrX rmsk exon 90202937 90203416 2326 - . gene_id "ERVL_Xq21.31c"; transcript_id "ERVL_Xq21.31c"; locus "ERVL_Xq21.31c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0488"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5233"; repStart "0"; chrX rmsk exon 90204299 90205613 7684 - . gene_id "ERVL_Xq21.31c"; transcript_id "ERVL_Xq21.31c"; locus "ERVL_Xq21.31c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0488"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "3906"; repStart "-515"; chrX rmsk exon 90205615 90205748 672 - . gene_id "ERVL_Xq21.31c"; transcript_id "ERVL_Xq21.31c"; locus "ERVL_Xq21.31c"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0488"; repClass "LTR"; repEnd "161"; repFamily "ERVL"; repLeft "6"; repStart "-556"; ### LTR46_Xq21.31 ### chrX rmsk gene 90215623 90223708 . - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0024"; model_cov "6714"; model_pct "96.1"; chrX rmsk exon 90215623 90216076 3011 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 90216077 90216384 2079 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6679"; repStart "0"; chrX rmsk exon 90216707 90219415 18207 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "6673"; repFamily "ERV1"; repLeft "3938"; repStart "-312"; chrX rmsk exon 90219412 90222439 19102 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "3790"; repFamily "ERV1"; repLeft "658"; repStart "-3195"; chrX rmsk exon 90222720 90223264 3603 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "1"; repStart "-6443"; chrX rmsk exon 90223265 90223708 2955 - . gene_id "LTR46_Xq21.31"; transcript_id "LTR46_Xq21.31"; locus "LTR46_Xq21.31"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0024"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Xq21.31c ### chrX rmsk gene 90276683 90283365 . - . gene_id "HERVFRD_Xq21.31c"; transcript_id "HERVFRD_Xq21.31c"; locus "HERVFRD_Xq21.31c"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0203"; model_cov "5643"; model_pct "78.3"; chrX rmsk exon 90276683 90283002 19072 - . gene_id "HERVFRD_Xq21.31c"; transcript_id "HERVFRD_Xq21.31c"; locus "HERVFRD_Xq21.31c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0203"; repClass "LTR"; repEnd "6310"; repFamily "ERV1"; repLeft "667"; repStart "-895"; chrX rmsk exon 90283004 90283365 1969 - . gene_id "HERVFRD_Xq21.31c"; transcript_id "HERVFRD_Xq21.31c"; locus "HERVFRD_Xq21.31c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0203"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "357"; repStart "-23"; ### MER4_Xq21.31i ### chrX rmsk gene 90283424 90290646 . + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0881"; model_cov "4670"; model_pct "70.8"; chrX rmsk exon 90283424 90283501 506 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "604"; chrX rmsk exon 90283523 90283771 1411 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "997"; repFamily "ERV1"; repLeft "-5601"; repStart "764"; chrX rmsk exon 90283832 90284541 4121 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1761"; chrX rmsk exon 90284657 90285363 2992 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "3677"; repFamily "ERV1"; repLeft "-2921"; repStart "2840"; chrX rmsk exon 90285367 90287858 14811 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "6432"; repFamily "ERV1"; repLeft "-166"; repStart "3837"; chrX rmsk exon 90289996 90290183 1129 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0881"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6405"; chrX rmsk exon 90290195 90290646 2933 + . gene_id "MER4_Xq21.31i"; transcript_id "MER4_Xq21.31i"; locus "MER4_Xq21.31i"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0881"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Xq21.31d ### chrX rmsk gene 90296561 90304850 . - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0521"; model_cov "5245"; model_pct "77.6"; chrX rmsk exon 90296561 90297146 3439 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 90297147 90297414 1621 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6491"; repStart "0"; chrX rmsk exon 90297407 90298914 6958 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "6577"; repFamily "ERV1"; repLeft "5122"; repStart "-181"; chrX rmsk exon 90299903 90300139 1072 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "4326"; repFamily "ERV1"; repLeft "4041"; repStart "-2432"; chrX rmsk exon 90300151 90300245 625 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "3546"; repFamily "ERV1"; repLeft "3452"; repStart "-3212"; chrX rmsk exon 90300253 90301170 7398 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "3327"; repFamily "ERV1"; repLeft "2394"; repStart "-3431"; chrX rmsk exon 90301463 90301542 7398 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "2327"; repStart "-4365"; chrX rmsk exon 90301844 90302364 7398 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "1795"; repStart "-4432"; chrX rmsk exon 90302671 90304221 7398 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "180"; repStart "-4964"; chrX rmsk exon 90304310 90304850 3251 - . gene_id "MER4B_Xq21.31d"; transcript_id "MER4B_Xq21.31d"; locus "MER4B_Xq21.31d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0521"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "45"; repStart "0"; ### ERVLB4_Xq21.31k ### chrX rmsk gene 90378077 90382023 . - . gene_id "ERVLB4_Xq21.31k"; transcript_id "ERVLB4_Xq21.31k"; locus "ERVLB4_Xq21.31k"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1848"; model_cov "3245"; model_pct "56.8"; chrX rmsk exon 90378077 90378527 1404 - . gene_id "ERVLB4_Xq21.31k"; transcript_id "ERVLB4_Xq21.31k"; locus "ERVLB4_Xq21.31k"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1848"; repClass "LTR"; repEnd "493"; repFamily "ERVL"; repLeft "-36"; repStart "-27"; chrX rmsk exon 90378535 90381742 16828 - . gene_id "ERVLB4_Xq21.31k"; transcript_id "ERVLB4_Xq21.31k"; locus "ERVLB4_Xq21.31k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1848"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "2465"; repStart "-4"; chrX rmsk exon 90381747 90382023 943 - . gene_id "ERVLB4_Xq21.31k"; transcript_id "ERVLB4_Xq21.31k"; locus "ERVLB4_Xq21.31k"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1848"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "1"; repStart "-253"; ### ERVLE_Xq21.31d ### chrX rmsk gene 90399288 90400065 . - . gene_id "ERVLE_Xq21.31d"; transcript_id "ERVLE_Xq21.31d"; locus "ERVLE_Xq21.31d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3687"; model_cov "813"; model_pct "14.3"; chrX rmsk exon 90399288 90400065 2175 - . gene_id "ERVLE_Xq21.31d"; transcript_id "ERVLE_Xq21.31d"; locus "ERVLE_Xq21.31d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3687"; repClass "LTR"; repEnd "4126"; repFamily "ERVL"; repLeft "3313"; repStart "-1541"; ### MER4_Xq21.31j ### chrX rmsk gene 90420054 90422116 . - . gene_id "MER4_Xq21.31j"; transcript_id "MER4_Xq21.31j"; locus "MER4_Xq21.31j"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0882"; model_cov "1879"; model_pct "28.5"; chrX rmsk exon 90420054 90420277 1545 - . gene_id "MER4_Xq21.31j"; transcript_id "MER4_Xq21.31j"; locus "MER4_Xq21.31j"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0882"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "248"; repStart "0"; chrX rmsk exon 90420278 90422116 10302 - . gene_id "MER4_Xq21.31j"; transcript_id "MER4_Xq21.31j"; locus "MER4_Xq21.31j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0882"; repClass "LTR"; repEnd "5724"; repFamily "ERV1"; repLeft "3845"; repStart "-874"; ### MER4_Xq21.31k ### chrX rmsk gene 90428908 90432711 . - . gene_id "MER4_Xq21.31k"; transcript_id "MER4_Xq21.31k"; locus "MER4_Xq21.31k"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0883"; model_cov "3297"; model_pct "50.0"; chrX rmsk exon 90428908 90429286 1418 - . gene_id "MER4_Xq21.31k"; transcript_id "MER4_Xq21.31k"; locus "MER4_Xq21.31k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0883"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "3304"; repStart "-2912"; chrX rmsk exon 90429315 90429702 1563 - . gene_id "MER4_Xq21.31k"; transcript_id "MER4_Xq21.31k"; locus "MER4_Xq21.31k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0883"; repClass "LTR"; repEnd "3150"; repFamily "ERV1"; repLeft "2737"; repStart "-3448"; chrX rmsk exon 90429925 90432258 11413 - . gene_id "MER4_Xq21.31k"; transcript_id "MER4_Xq21.31k"; locus "MER4_Xq21.31k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0883"; repClass "LTR"; repEnd "2503"; repFamily "ERV1"; repLeft "1"; repStart "-4095"; chrX rmsk exon 90432262 90432711 3266 - . gene_id "MER4_Xq21.31k"; transcript_id "MER4_Xq21.31k"; locus "MER4_Xq21.31k"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0883"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Xq21.31d ### chrX rmsk gene 90432713 90439507 . - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0205"; model_cov "5884"; model_pct "81.7"; chrX rmsk exon 90432713 90432992 1657 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0205"; repClass "LTR"; repEnd "288"; repFamily "ERV1"; repLeft "1"; repStart "-446"; chrX rmsk exon 90432993 90433204 1461 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6989"; repStart "-8"; chrX rmsk exon 90433190 90434412 6920 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "7048"; repFamily "ERV1"; repLeft "5076"; repStart "-157"; chrX rmsk exon 90434403 90434470 330 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "4962"; repFamily "ERV1"; repLeft "4910"; repStart "-2243"; chrX rmsk exon 90435015 90436798 8196 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "4593"; repFamily "ERV1"; repLeft "2788"; repStart "-2612"; chrX rmsk exon 90436796 90436935 3895 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "1849"; repFamily "ERV1"; repLeft "1720"; repStart "-5356"; chrX rmsk exon 90437248 90438771 3895 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0205"; repClass "LTR"; repEnd "1719"; repFamily "ERV1"; repLeft "1"; repStart "-5486"; chrX rmsk exon 90438772 90439507 3689 - . gene_id "HERVFRD_Xq21.31d"; transcript_id "HERVFRD_Xq21.31d"; locus "HERVFRD_Xq21.31d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0205"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xq21.31l ### chrX rmsk gene 90478285 90480762 . - . gene_id "ERVLB4_Xq21.31l"; transcript_id "ERVLB4_Xq21.31l"; locus "ERVLB4_Xq21.31l"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1849"; model_cov "2001"; model_pct "35.0"; chrX rmsk exon 90478285 90479909 7575 - . gene_id "ERVLB4_Xq21.31l"; transcript_id "ERVLB4_Xq21.31l"; locus "ERVLB4_Xq21.31l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1849"; repClass "LTR"; repEnd "3570"; repFamily "ERVL"; repLeft "1881"; repStart "-2144"; chrX rmsk exon 90479952 90480065 559 - . gene_id "ERVLB4_Xq21.31l"; transcript_id "ERVLB4_Xq21.31l"; locus "ERVLB4_Xq21.31l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1849"; repClass "LTR"; repEnd "1132"; repFamily "ERVL"; repLeft "1017"; repStart "-4582"; chrX rmsk exon 90480230 90480429 654 - . gene_id "ERVLB4_Xq21.31l"; transcript_id "ERVLB4_Xq21.31l"; locus "ERVLB4_Xq21.31l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1849"; repClass "LTR"; repEnd "1015"; repFamily "ERVL"; repLeft "818"; repStart "-4699"; chrX rmsk exon 90480452 90480762 1184 - . gene_id "ERVLB4_Xq21.31l"; transcript_id "ERVLB4_Xq21.31l"; locus "ERVLB4_Xq21.31l"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1849"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "5"; repStart "-56"; ### ERVL_Xq21.31d ### chrX rmsk gene 90486774 90490448 . - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0489"; model_cov "2252"; model_pct "39.1"; chrX rmsk exon 90486774 90487266 1837 - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0489"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "-39"; repStart "-6"; chrX rmsk exon 90487269 90488389 6038 - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0489"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "4647"; repStart "-2"; chrX rmsk exon 90488423 90488680 5949 - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0489"; repClass "LTR"; repEnd "4649"; repFamily "ERVL"; repLeft "4394"; repStart "-1108"; chrX rmsk exon 90489116 90489877 5949 - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0489"; repClass "LTR"; repEnd "4393"; repFamily "ERVL"; repLeft "3640"; repStart "-1364"; chrX rmsk exon 90490296 90490448 5949 - . gene_id "ERVL_Xq21.31d"; transcript_id "ERVL_Xq21.31d"; locus "ERVL_Xq21.31d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0489"; repClass "LTR"; repEnd "3639"; repFamily "ERVL"; repLeft "3503"; repStart "-2118"; ### MER4_Xq21.31l ### chrX rmsk gene 90522781 90524310 . + . gene_id "MER4_Xq21.31l"; transcript_id "MER4_Xq21.31l"; locus "MER4_Xq21.31l"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0884"; model_cov "1131"; model_pct "17.1"; chrX rmsk exon 90522781 90523268 3038 + . gene_id "MER4_Xq21.31l"; transcript_id "MER4_Xq21.31l"; locus "MER4_Xq21.31l"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0884"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 90523272 90523820 2519 + . gene_id "MER4_Xq21.31l"; transcript_id "MER4_Xq21.31l"; locus "MER4_Xq21.31l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0884"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chrX rmsk exon 90523789 90523896 428 + . gene_id "MER4_Xq21.31l"; transcript_id "MER4_Xq21.31l"; locus "MER4_Xq21.31l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0884"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-7235"; repStart "-739"; chrX rmsk exon 90523992 90524310 1207 + . gene_id "MER4_Xq21.31l"; transcript_id "MER4_Xq21.31l"; locus "MER4_Xq21.31l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0884"; repClass "LTR"; repEnd "2471"; repFamily "ERV1"; repLeft "-4127"; repStart "2127"; ### MER4_Xq21.31m ### chrX rmsk gene 90524331 90530376 . + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0885"; model_cov "5461"; model_pct "82.8"; chrX rmsk exon 90524331 90524997 3966 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0885"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "29"; chrX rmsk exon 90525019 90525293 1424 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0885"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "-5573"; repStart "634"; chrX rmsk exon 90525291 90525969 3726 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0885"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chrX rmsk exon 90526187 90527064 3288 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0885"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2759"; chrX rmsk exon 90527064 90529877 13245 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0885"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chrX rmsk exon 90529905 90530376 2998 + . gene_id "MER4_Xq21.31m"; transcript_id "MER4_Xq21.31m"; locus "MER4_Xq21.31m"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0885"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_Xq21.31a ### chrX rmsk gene 90566623 90567312 . - . gene_id "MER41_Xq21.31a"; transcript_id "MER41_Xq21.31a"; locus "MER41_Xq21.31a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0598"; model_cov "772"; model_pct "13.0"; chrX rmsk exon 90566623 90566939 2095 - . gene_id "MER41_Xq21.31a"; transcript_id "MER41_Xq21.31a"; locus "MER41_Xq21.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0598"; repClass "LTR"; repEnd "5938"; repFamily "ERV1"; repLeft "5622"; repStart "-8"; chrX rmsk exon 90566937 90567312 19895 - . gene_id "MER41_Xq21.31a"; transcript_id "MER41_Xq21.31a"; locus "MER41_Xq21.31a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0598"; repClass "LTR"; repEnd "4769"; repFamily "ERV1"; repLeft "4313"; repStart "-1177"; ### MER41_Xq21.31b ### chrX rmsk gene 90567362 90571568 . - . gene_id "MER41_Xq21.31b"; transcript_id "MER41_Xq21.31b"; locus "MER41_Xq21.31b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0599"; model_cov "5125"; model_pct "86.2"; chrX rmsk exon 90567362 90571568 19895 - . gene_id "MER41_Xq21.31b"; transcript_id "MER41_Xq21.31b"; locus "MER41_Xq21.31b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0599"; repClass "LTR"; repEnd "4769"; repFamily "ERV1"; repLeft "-356"; repStart "-1177"; ### HERVFRD_Xq21.31e ### chrX rmsk gene 90574906 90576903 . - . gene_id "HERVFRD_Xq21.31e"; transcript_id "HERVFRD_Xq21.31e"; locus "HERVFRD_Xq21.31e"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0206"; model_cov "888"; model_pct "12.3"; chrX rmsk exon 90574906 90575040 851 - . gene_id "HERVFRD_Xq21.31e"; transcript_id "HERVFRD_Xq21.31e"; locus "HERVFRD_Xq21.31e"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0206"; repClass "LTR"; repEnd "894"; repFamily "ERV1"; repLeft "763"; repStart "-6311"; chrX rmsk exon 90575092 90575846 4878 - . gene_id "HERVFRD_Xq21.31e"; transcript_id "HERVFRD_Xq21.31e"; locus "HERVFRD_Xq21.31e"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0206"; repClass "LTR"; repEnd "758"; repFamily "ERV1"; repLeft "1"; repStart "-6447"; chrX rmsk exon 90575847 90576098 3824 - . gene_id "HERVFRD_Xq21.31e"; transcript_id "HERVFRD_Xq21.31e"; locus "HERVFRD_Xq21.31e"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0206"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "477"; repStart "0"; chrX rmsk exon 90576424 90576903 3824 - . gene_id "HERVFRD_Xq21.31e"; transcript_id "HERVFRD_Xq21.31e"; locus "HERVFRD_Xq21.31e"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0206"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "2"; repStart "-258"; ### HERVL_Xq21.31h ### chrX rmsk gene 90630590 90633551 . + . gene_id "HERVL_Xq21.31h"; transcript_id "HERVL_Xq21.31h"; locus "HERVL_Xq21.31h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1332"; model_cov "2083"; model_pct "36.8"; chrX rmsk exon 90630590 90631035 3009 + . gene_id "HERVL_Xq21.31h"; transcript_id "HERVL_Xq21.31h"; locus "HERVL_Xq21.31h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1332"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "-5"; repStart "1"; chrX rmsk exon 90631038 90631652 4718 + . gene_id "HERVL_Xq21.31h"; transcript_id "HERVL_Xq21.31h"; locus "HERVL_Xq21.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1332"; repClass "LTR"; repEnd "616"; repFamily "ERVL"; repLeft "-5038"; repStart "1"; chrX rmsk exon 90631651 90633108 11101 + . gene_id "HERVL_Xq21.31h"; transcript_id "HERVL_Xq21.31h"; locus "HERVL_Xq21.31h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1332"; repClass "LTR"; repEnd "5578"; repFamily "ERVL"; repLeft "-76"; repStart "4110"; chrX rmsk exon 90633146 90633551 2901 + . gene_id "HERVL_Xq21.31h"; transcript_id "HERVL_Xq21.31h"; locus "HERVL_Xq21.31h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1332"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; ### HERVL_Xq21.31i ### chrX rmsk gene 90694058 90699707 . - . gene_id "HERVL_Xq21.31i"; transcript_id "HERVL_Xq21.31i"; locus "HERVL_Xq21.31i"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1333"; model_cov "5124"; model_pct "90.6"; chrX rmsk exon 90694058 90694125 399 - . gene_id "HERVL_Xq21.31i"; transcript_id "HERVL_Xq21.31i"; locus "HERVL_Xq21.31i"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1333"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "386"; repStart "0"; chrX rmsk exon 90694126 90699261 38046 - . gene_id "HERVL_Xq21.31i"; transcript_id "HERVL_Xq21.31i"; locus "HERVL_Xq21.31i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1333"; repClass "LTR"; repEnd "5125"; repFamily "ERVL"; repLeft "1"; repStart "-529"; chrX rmsk exon 90699262 90699707 3195 - . gene_id "HERVL_Xq21.31i"; transcript_id "HERVL_Xq21.31i"; locus "HERVL_Xq21.31i"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1333"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_Xq21.31b ### chrX rmsk gene 90773313 90779155 . - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1252"; model_cov "4904"; model_pct "63.6"; chrX rmsk exon 90773313 90773762 3216 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 90773763 90774138 2487 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chrX rmsk exon 90774141 90774356 1371 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 90774358 90775020 4238 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 90775023 90775522 3205 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 90775513 90775660 895 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 90775655 90778704 19557 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 90778707 90779155 3385 - . gene_id "HERVH_Xq21.31b"; transcript_id "HERVH_Xq21.31b"; locus "HERVH_Xq21.31b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1252"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### MER4_Xq21.31n ### chrX rmsk gene 90943857 90948349 . + . gene_id "MER4_Xq21.31n"; transcript_id "MER4_Xq21.31n"; locus "MER4_Xq21.31n"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0886"; model_cov "3352"; model_pct "50.8"; chrX rmsk exon 90943857 90944292 2470 + . gene_id "MER4_Xq21.31n"; transcript_id "MER4_Xq21.31n"; locus "MER4_Xq21.31n"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0886"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chrX rmsk exon 90944301 90946857 9098 + . gene_id "MER4_Xq21.31n"; transcript_id "MER4_Xq21.31n"; locus "MER4_Xq21.31n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0886"; repClass "LTR"; repEnd "2321"; repFamily "ERV1"; repLeft "-4277"; repStart "1"; chrX rmsk exon 90946854 90947846 5538 + . gene_id "MER4_Xq21.31n"; transcript_id "MER4_Xq21.31n"; locus "MER4_Xq21.31n"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0886"; repClass "LTR"; repEnd "6548"; repFamily "ERV1"; repLeft "-50"; repStart "5516"; chrX rmsk exon 90947899 90948349 2909 + . gene_id "MER4_Xq21.31n"; transcript_id "MER4_Xq21.31n"; locus "MER4_Xq21.31n"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0886"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Xq21.31e ### chrX rmsk gene 91000872 91005363 . + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0522"; model_cov "2611"; model_pct "38.6"; chrX rmsk exon 91000872 91001459 2661 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "-155"; chrX rmsk exon 91001460 91002107 4982 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "-6109"; repStart "1"; chrX rmsk exon 91003401 91003586 4982 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "-5912"; repStart "650"; chrX rmsk exon 91003587 91003835 1306 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "1153"; repFamily "ERV1"; repLeft "-5605"; repStart "924"; chrX rmsk exon 91003889 91004364 3173 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "2422"; repFamily "ERV1"; repLeft "-4336"; repStart "1908"; chrX rmsk exon 91004719 91005363 3243 + . gene_id "MER4B_Xq21.31e"; transcript_id "MER4B_Xq21.31e"; locus "MER4B_Xq21.31e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0522"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4116"; repStart "1618"; ### MER4_Xq21.31o ### chrX rmsk gene 91005364 91006901 . - . gene_id "MER4_Xq21.31o"; transcript_id "MER4_Xq21.31o"; locus "MER4_Xq21.31o"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0887"; model_cov "773"; model_pct "11.7"; chrX rmsk exon 91005364 91005832 3434 - . gene_id "MER4_Xq21.31o"; transcript_id "MER4_Xq21.31o"; locus "MER4_Xq21.31o"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0887"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 91006154 91006901 4514 - . gene_id "MER4_Xq21.31o"; transcript_id "MER4_Xq21.31o"; locus "MER4_Xq21.31o"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0887"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5825"; repStart "0"; ### HERVL_Xq21.31j ### chrX rmsk gene 91058847 91065210 . + . gene_id "HERVL_Xq21.31j"; transcript_id "HERVL_Xq21.31j"; locus "HERVL_Xq21.31j"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1335"; model_cov "5538"; model_pct "97.9"; chrX rmsk exon 91058847 91059209 2409 + . gene_id "HERVL_Xq21.31j"; transcript_id "HERVL_Xq21.31j"; locus "HERVL_Xq21.31j"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1335"; repClass "LTR"; repEnd "368"; repFamily "ERVL"; repLeft "-76"; repStart "1"; chrX rmsk exon 91059210 91064709 42511 + . gene_id "HERVL_Xq21.31j"; transcript_id "HERVL_Xq21.31j"; locus "HERVL_Xq21.31j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1335"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "116"; chrX rmsk exon 91064710 91065123 2779 + . gene_id "HERVL_Xq21.31j"; transcript_id "HERVL_Xq21.31j"; locus "HERVL_Xq21.31j"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1335"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chrX rmsk exon 91065156 91065210 2779 + . gene_id "HERVL_Xq21.31j"; transcript_id "HERVL_Xq21.31j"; locus "HERVL_Xq21.31j"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1335"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "405"; ### HERVFRD_Xq21.31f ### chrX rmsk gene 91122923 91124949 . + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0208"; model_cov "997"; model_pct "13.8"; chrX rmsk exon 91122923 91123163 1257 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0208"; repClass "LTR"; repEnd "233"; repFamily "ERV1"; repLeft "-501"; repStart "1"; chrX rmsk exon 91123153 91123426 1438 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0208"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "433"; chrX rmsk exon 91123512 91124219 3531 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0208"; repClass "LTR"; repEnd "775"; repFamily "ERV1"; repLeft "-6430"; repStart "1"; chrX rmsk exon 91124202 91124426 1371 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0208"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6974"; chrX rmsk exon 91124428 91124660 1025 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0208"; repClass "LTR"; repEnd "229"; repFamily "ERV1"; repLeft "-505"; repStart "2"; chrX rmsk exon 91124659 91124949 1594 + . gene_id "HERVFRD_Xq21.31f"; transcript_id "HERVFRD_Xq21.31f"; locus "HERVFRD_Xq21.31f"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0208"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "0"; repStart "455"; ### ERVL_Xq21.31e ### chrX rmsk gene 91257434 91258898 . + . gene_id "ERVL_Xq21.31e"; transcript_id "ERVL_Xq21.31e"; locus "ERVL_Xq21.31e"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0490"; model_cov "777"; model_pct "13.5"; chrX rmsk exon 91257434 91257811 2186 + . gene_id "ERVL_Xq21.31e"; transcript_id "ERVL_Xq21.31e"; locus "ERVL_Xq21.31e"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0490"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "-20"; repStart "1"; chrX rmsk exon 91257917 91258487 1659 + . gene_id "ERVL_Xq21.31e"; transcript_id "ERVL_Xq21.31e"; locus "ERVL_Xq21.31e"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0490"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "-5189"; repStart "4"; chrX rmsk exon 91258685 91258898 1165 + . gene_id "ERVL_Xq21.31e"; transcript_id "ERVL_Xq21.31e"; locus "ERVL_Xq21.31e"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0490"; repClass "LTR"; repEnd "969"; repFamily "ERVL"; repLeft "-4788"; repStart "756"; ### HERVL40_Xq21.31 ### chrX rmsk gene 91272857 91274915 . - . gene_id "HERVL40_Xq21.31"; transcript_id "HERVL40_Xq21.31"; locus "HERVL40_Xq21.31"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0478"; model_cov "1801"; model_pct "32.6"; chrX rmsk exon 91272857 91273329 1297 - . gene_id "HERVL40_Xq21.31"; transcript_id "HERVL40_Xq21.31"; locus "HERVL40_Xq21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0478"; repClass "LTR"; repEnd "4644"; repFamily "ERVL"; repLeft "4165"; repStart "-886"; chrX rmsk exon 91273593 91274915 3391 - . gene_id "HERVL40_Xq21.31"; transcript_id "HERVL40_Xq21.31"; locus "HERVL40_Xq21.31"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0478"; repClass "LTR"; repEnd "4028"; repFamily "ERVL"; repLeft "2706"; repStart "-1502"; ### ERV316A3_Xq21.31c ### chrX rmsk gene 91274984 91276234 . + . gene_id "ERV316A3_Xq21.31c"; transcript_id "ERV316A3_Xq21.31c"; locus "ERV316A3_Xq21.31c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2798"; model_cov "1285"; model_pct "24.6"; chrX rmsk exon 91274984 91276234 1297 + . gene_id "ERV316A3_Xq21.31c"; transcript_id "ERV316A3_Xq21.31c"; locus "ERV316A3_Xq21.31c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2798"; repClass "LTR"; repEnd "4867"; repFamily "ERVL"; repLeft "-359"; repStart "3582"; ### HUERSP3B_Xq21.31 ### chrX rmsk gene 91277278 91278621 . - . gene_id "HUERSP3B_Xq21.31"; transcript_id "HUERSP3B_Xq21.31"; locus "HUERSP3B_Xq21.31"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0145"; model_cov "1482"; model_pct "20.0"; chrX rmsk exon 91277278 91278192 4456 - . gene_id "HUERSP3B_Xq21.31"; transcript_id "HUERSP3B_Xq21.31"; locus "HUERSP3B_Xq21.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0145"; repClass "LTR"; repEnd "5613"; repFamily "ERV1"; repLeft "4245"; repStart "-1805"; chrX rmsk exon 91278502 91278621 1899 - . gene_id "HUERSP3B_Xq21.31"; transcript_id "HUERSP3B_Xq21.31"; locus "HUERSP3B_Xq21.31"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0145"; repClass "LTR"; repEnd "4125"; repFamily "ERV1"; repLeft "4011"; repStart "-3293"; ### LTR25_Xq21.31 ### chrX rmsk gene 91278622 91280203 . - . gene_id "LTR25_Xq21.31"; transcript_id "LTR25_Xq21.31"; locus "LTR25_Xq21.31"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0149"; model_cov "1229"; model_pct "17.1"; chrX rmsk exon 91278622 91279551 3446 - . gene_id "LTR25_Xq21.31"; transcript_id "LTR25_Xq21.31"; locus "LTR25_Xq21.31"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0149"; repClass "LTR"; repEnd "4425"; repFamily "ERV1"; repLeft "3755"; repStart "-2763"; chrX rmsk exon 91279622 91280203 1044 - . gene_id "LTR25_Xq21.31"; transcript_id "LTR25_Xq21.31"; locus "LTR25_Xq21.31"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0149"; repClass "LTR"; repEnd "698"; repFamily "ERV1"; repLeft "139"; repStart "-6490"; ### HERVL_Xq21.31k ### chrX rmsk gene 91346322 91349257 . + . gene_id "HERVL_Xq21.31k"; transcript_id "HERVL_Xq21.31k"; locus "HERVL_Xq21.31k"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1336"; model_cov "2393"; model_pct "42.3"; chrX rmsk exon 91346322 91348706 15329 + . gene_id "HERVL_Xq21.31k"; transcript_id "HERVL_Xq21.31k"; locus "HERVL_Xq21.31k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1336"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3261"; chrX rmsk exon 91348707 91349257 2058 + . gene_id "HERVL_Xq21.31k"; transcript_id "HERVL_Xq21.31k"; locus "HERVL_Xq21.31k"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1336"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### MER4_Xq21.31p ### chrX rmsk gene 91356294 91358198 . - . gene_id "MER4_Xq21.31p"; transcript_id "MER4_Xq21.31p"; locus "MER4_Xq21.31p"; category "internal"; intModel "MER4-int"; locid "MER4-int_0888"; model_cov "1971"; model_pct "29.9"; chrX rmsk exon 91356294 91358198 9933 - . gene_id "MER4_Xq21.31p"; transcript_id "MER4_Xq21.31p"; locus "MER4_Xq21.31p"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0888"; repClass "LTR"; repEnd "5776"; repFamily "ERV1"; repLeft "3805"; repStart "-822"; ### MER4_Xq21.31q ### chrX rmsk gene 91361149 91363125 . - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0889"; model_cov "833"; model_pct "12.6"; chrX rmsk exon 91361149 91361303 760 - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0889"; repClass "LTR"; repEnd "1429"; repFamily "ERV1"; repLeft "1269"; repStart "-5169"; chrX rmsk exon 91361363 91361471 440 - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0889"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 91361459 91361571 301 - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0889"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "524"; repStart "-5912"; chrX rmsk exon 91362120 91362525 2318 - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0889"; repClass "LTR"; repEnd "429"; repFamily "ERV1"; repLeft "1"; repStart "-6169"; chrX rmsk exon 91362529 91363125 3270 - . gene_id "MER4_Xq21.31q"; transcript_id "MER4_Xq21.31q"; locus "MER4_Xq21.31q"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0889"; repClass "LTR"; repEnd "599"; repFamily "ERV1"; repLeft "3"; repStart "-1"; ### ERVLB4_Xq21.31m ### chrX rmsk gene 91379339 91380789 . + . gene_id "ERVLB4_Xq21.31m"; transcript_id "ERVLB4_Xq21.31m"; locus "ERVLB4_Xq21.31m"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1851"; model_cov "960"; model_pct "16.8"; chrX rmsk exon 91379339 91380344 4640 + . gene_id "ERVLB4_Xq21.31m"; transcript_id "ERVLB4_Xq21.31m"; locus "ERVLB4_Xq21.31m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1851"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4754"; chrX rmsk exon 91380345 91380789 2031 + . gene_id "ERVLB4_Xq21.31m"; transcript_id "ERVLB4_Xq21.31m"; locus "ERVLB4_Xq21.31m"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1851"; repClass "LTR"; repEnd "500"; repFamily "ERVL"; repLeft "-56"; repStart "1"; ### MER4B_Xq21.31f ### chrX rmsk gene 91641322 91643567 . + . gene_id "MER4B_Xq21.31f"; transcript_id "MER4B_Xq21.31f"; locus "MER4B_Xq21.31f"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0523"; model_cov "1722"; model_pct "25.5"; chrX rmsk exon 91641322 91642609 7659 + . gene_id "MER4B_Xq21.31f"; transcript_id "MER4B_Xq21.31f"; locus "MER4B_Xq21.31f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0523"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-439"; repStart "4974"; chrX rmsk exon 91642634 91643007 2375 + . gene_id "MER4B_Xq21.31f"; transcript_id "MER4B_Xq21.31f"; locus "MER4B_Xq21.31f"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0523"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6381"; chrX rmsk exon 91643008 91643567 2593 + . gene_id "MER4B_Xq21.31f"; transcript_id "MER4B_Xq21.31f"; locus "MER4B_Xq21.31f"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0523"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-46"; repStart "1"; ### HERVL_Xq21.31l ### chrX rmsk gene 91899027 91900600 . - . gene_id "HERVL_Xq21.31l"; transcript_id "HERVL_Xq21.31l"; locus "HERVL_Xq21.31l"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1337"; model_cov "1109"; model_pct "19.6"; chrX rmsk exon 91899027 91899530 2206 - . gene_id "HERVL_Xq21.31l"; transcript_id "HERVL_Xq21.31l"; locus "HERVL_Xq21.31l"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1337"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-96"; repStart "-8"; chrX rmsk exon 91899535 91900600 7377 - . gene_id "HERVL_Xq21.31l"; transcript_id "HERVL_Xq21.31l"; locus "HERVL_Xq21.31l"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1337"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4545"; repStart "0"; ### HERVH_Xq21.31c ### chrX rmsk gene 92100240 92105917 . - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1253"; model_cov "4906"; model_pct "63.6"; chrX rmsk exon 92100240 92100690 3359 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 92100691 92101063 2354 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 92101062 92101279 1438 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 92101281 92101936 4168 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 92101939 92102441 3296 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 92102434 92102579 848 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "3288"; repFamily "ERV1"; repLeft "3140"; repStart "-4425"; chrX rmsk exon 92102574 92105434 15497 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 92105437 92105917 3219 - . gene_id "HERVH_Xq21.31c"; transcript_id "HERVH_Xq21.31c"; locus "HERVH_Xq21.31c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1253"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xq21.31d ### chrX rmsk gene 92273083 92278794 . - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1254"; model_cov "4908"; model_pct "63.6"; chrX rmsk exon 92273083 92273516 2608 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 92273517 92273886 2396 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 92273885 92274105 1351 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chrX rmsk exon 92274103 92274763 4235 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 92274766 92275265 3259 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 92275256 92275402 788 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 92275400 92278360 20262 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "1"; repStart "-4729"; chrX rmsk exon 92278361 92278794 2615 - . gene_id "HERVH_Xq21.31d"; transcript_id "HERVH_Xq21.31d"; locus "HERVH_Xq21.31d"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1254"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV4_Xq21.31b ### chrX rmsk gene 92692207 92693880 . - . gene_id "HERV4_Xq21.31b"; transcript_id "HERV4_Xq21.31b"; locus "HERV4_Xq21.31b"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0145"; model_cov "1256"; model_pct "19.2"; chrX rmsk exon 92692207 92693880 1113 - . gene_id "HERV4_Xq21.31b"; transcript_id "HERV4_Xq21.31b"; locus "HERV4_Xq21.31b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0145"; repClass "LTR"; repEnd "5644"; repFamily "ERV1"; repLeft "4388"; repStart "-895"; ### HERVL_Xq21.32a ### chrX rmsk gene 92727373 92733887 . + . gene_id "HERVL_Xq21.32a"; transcript_id "HERVL_Xq21.32a"; locus "HERVL_Xq21.32a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1339"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 92727373 92727824 3306 + . gene_id "HERVL_Xq21.32a"; transcript_id "HERVL_Xq21.32a"; locus "HERVL_Xq21.32a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1339"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 92727826 92733436 41512 + . gene_id "HERVL_Xq21.32a"; transcript_id "HERVL_Xq21.32a"; locus "HERVL_Xq21.32a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1339"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chrX rmsk exon 92733437 92733887 3347 + . gene_id "HERVL_Xq21.32a"; transcript_id "HERVL_Xq21.32a"; locus "HERVL_Xq21.32a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1339"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_Xq21.32a ### chrX rmsk gene 92824428 92829345 . + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1255"; model_cov "3893"; model_pct "50.5"; chrX rmsk exon 92824428 92824880 3491 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 92824883 92827894 20386 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 92827889 92828035 774 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 92828026 92828239 1377 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "3704"; repFamily "ERV1"; repLeft "-4009"; repStart "3492"; chrX rmsk exon 92828339 92828559 1351 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chrX rmsk exon 92828583 92828894 2107 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7390"; chrX rmsk exon 92828895 92829345 3515 + . gene_id "HERVH_Xq21.32a"; transcript_id "HERVH_Xq21.32a"; locus "HERVH_Xq21.32a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1255"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_Xq21.32b ### chrX rmsk gene 93022959 93028634 . + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1256"; model_cov "4895"; model_pct "63.5"; chrX rmsk exon 93022959 93023368 2659 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 93023371 93026331 20032 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 93026326 93026472 808 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 93026464 93026965 3463 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3493"; chrX rmsk exon 93026968 93027631 4337 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 93027647 93027850 1318 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5612"; chrX rmsk exon 93027849 93028225 2334 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 93028226 93028634 2632 + . gene_id "HERVH_Xq21.32b"; transcript_id "HERVH_Xq21.32b"; locus "HERVH_Xq21.32b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1256"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR19_Xq21.32 ### chrX rmsk gene 93178505 93179323 . + . gene_id "LTR19_Xq21.32"; transcript_id "LTR19_Xq21.32"; locus "LTR19_Xq21.32"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0063"; model_cov "1107"; model_pct "19.8"; chrX rmsk exon 93178505 93178668 780 + . gene_id "LTR19_Xq21.32"; transcript_id "LTR19_Xq21.32"; locus "LTR19_Xq21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0063"; repClass "LTR"; repEnd "787"; repFamily "ERV1"; repLeft "-4799"; repStart "630"; chrX rmsk exon 93178671 93179323 2272 + . gene_id "LTR19_Xq21.32"; transcript_id "LTR19_Xq21.32"; locus "LTR19_Xq21.32"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0063"; repClass "LTR"; repEnd "1704"; repFamily "ERV1"; repLeft "-3882"; repStart "754"; ### HERVEA_Xq21.32 ### chrX rmsk gene 93236879 93239646 . + . gene_id "HERVEA_Xq21.32"; transcript_id "HERVEA_Xq21.32"; locus "HERVEA_Xq21.32"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0109"; model_cov "2313"; model_pct "29.5"; chrX rmsk exon 93236879 93239185 19481 + . gene_id "HERVEA_Xq21.32"; transcript_id "HERVEA_Xq21.32"; locus "HERVEA_Xq21.32"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0109"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "5534"; chrX rmsk exon 93239186 93239646 3681 + . gene_id "HERVEA_Xq21.32"; transcript_id "HERVEA_Xq21.32"; locus "HERVEA_Xq21.32"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0109"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xq21.32 ### chrX rmsk gene 93254222 93256312 . - . gene_id "ERVLB4_Xq21.32"; transcript_id "ERVLB4_Xq21.32"; locus "ERVLB4_Xq21.32"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1852"; model_cov "1979"; model_pct "34.6"; chrX rmsk exon 93254222 93256155 11087 - . gene_id "ERVLB4_Xq21.32"; transcript_id "ERVLB4_Xq21.32"; locus "ERVLB4_Xq21.32"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1852"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "1"; repStart "-3734"; chrX rmsk exon 93256156 93256206 2043 - . gene_id "ERVLB4_Xq21.32"; transcript_id "ERVLB4_Xq21.32"; locus "ERVLB4_Xq21.32"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1852"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "513"; repStart "0"; chrX rmsk exon 93256259 93256312 2043 - . gene_id "ERVLB4_Xq21.32"; transcript_id "ERVLB4_Xq21.32"; locus "ERVLB4_Xq21.32"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1852"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "476"; repStart "-42"; ### ERVLE_Xq21.32a ### chrX rmsk gene 93263091 93264034 . - . gene_id "ERVLE_Xq21.32a"; transcript_id "ERVLE_Xq21.32a"; locus "ERVLE_Xq21.32a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3688"; model_cov "910"; model_pct "16.1"; chrX rmsk exon 93263091 93263882 1711 - . gene_id "ERVLE_Xq21.32a"; transcript_id "ERVLE_Xq21.32a"; locus "ERVLE_Xq21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3688"; repClass "LTR"; repEnd "4655"; repFamily "ERVL"; repLeft "3905"; repStart "-1012"; chrX rmsk exon 93263874 93264034 472 - . gene_id "ERVLE_Xq21.32a"; transcript_id "ERVLE_Xq21.32a"; locus "ERVLE_Xq21.32a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3688"; repClass "LTR"; repEnd "1464"; repFamily "ERVL"; repLeft "1304"; repStart "-4203"; ### HERVFRD_Xq21.32a ### chrX rmsk gene 93418212 93421536 . - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0210"; model_cov "2050"; model_pct "28.5"; chrX rmsk exon 93418212 93418910 4440 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0210"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrX rmsk exon 93418912 93419354 1731 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0210"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6827"; repStart "-8"; chrX rmsk exon 93419347 93419397 340 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0210"; repClass "LTR"; repEnd "3390"; repFamily "ERV1"; repLeft "3336"; repStart "-3815"; chrX rmsk exon 93419395 93419507 524 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0210"; repClass "LTR"; repEnd "2887"; repFamily "ERV1"; repLeft "2788"; repStart "-4318"; chrX rmsk exon 93419501 93420727 2722 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0210"; repClass "LTR"; repEnd "1792"; repFamily "ERV1"; repLeft "389"; repStart "-5413"; chrX rmsk exon 93420715 93420832 471 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0210"; repClass "LTR"; repEnd "128"; repFamily "ERV1"; repLeft "4"; repStart "-7077"; chrX rmsk exon 93420835 93421536 4067 - . gene_id "HERVFRD_Xq21.32a"; transcript_id "HERVFRD_Xq21.32a"; locus "HERVFRD_Xq21.32a"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0210"; repClass "LTR"; repEnd "697"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HERVE_Xq21.32 ### chrX rmsk gene 93429668 93438491 . + . gene_id "HERVE_Xq21.32"; transcript_id "HERVE_Xq21.32"; locus "HERVE_Xq21.32"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0165"; model_cov "7811"; model_pct "100.0"; chrX rmsk exon 93429668 93430164 3966 + . gene_id "HERVE_Xq21.32"; transcript_id "HERVE_Xq21.32"; locus "HERVE_Xq21.32"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0165"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 93430165 93437998 61360 + . gene_id "HERVE_Xq21.32"; transcript_id "HERVE_Xq21.32"; locus "HERVE_Xq21.32"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0165"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "1"; chrX rmsk exon 93438002 93438491 3796 + . gene_id "HERVE_Xq21.32"; transcript_id "HERVE_Xq21.32"; locus "HERVE_Xq21.32"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0165"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### MER61_Xq21.32 ### chrX rmsk gene 93457873 93462489 . - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0408"; model_cov "4031"; model_pct "77.3"; chrX rmsk exon 93457873 93460725 19866 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0408"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "2313"; repStart "0"; chrX rmsk exon 93460720 93461070 2095 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0408"; repClass "LTR"; repEnd "2055"; repFamily "ERV1"; repLeft "1718"; repStart "-3162"; chrX rmsk exon 93461065 93461140 456 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0408"; repClass "LTR"; repEnd "1495"; repFamily "ERV1"; repLeft "1411"; repStart "-3722"; chrX rmsk exon 93461216 93461848 2266 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0408"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "1"; repStart "-4510"; chrX rmsk exon 93461849 93461931 1801 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0408"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "264"; repStart "0"; chrX rmsk exon 93462239 93462489 1801 - . gene_id "MER61_Xq21.32"; transcript_id "MER61_Xq21.32"; locus "MER61_Xq21.32"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0408"; repClass "LTR"; repEnd "263"; repFamily "ERV1"; repLeft "2"; repStart "-78"; ### PABLA_Xq21.32 ### chrX rmsk gene 93566201 93567593 . - . gene_id "PABLA_Xq21.32"; transcript_id "PABLA_Xq21.32"; locus "PABLA_Xq21.32"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0165"; model_cov "1406"; model_pct "28.0"; chrX rmsk exon 93566201 93567593 8783 - . gene_id "PABLA_Xq21.32"; transcript_id "PABLA_Xq21.32"; locus "PABLA_Xq21.32"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0165"; repClass "LTR"; repEnd "4778"; repFamily "ERV1"; repLeft "3372"; repStart "-237"; ### MER4B_Xq21.32 ### chrX rmsk gene 93569925 93571530 . - . gene_id "MER4B_Xq21.32"; transcript_id "MER4B_Xq21.32"; locus "MER4B_Xq21.32"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0525"; model_cov "1417"; model_pct "21.0"; chrX rmsk exon 93569925 93570244 1994 - . gene_id "MER4B_Xq21.32"; transcript_id "MER4B_Xq21.32"; locus "MER4B_Xq21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0525"; repClass "LTR"; repEnd "5039"; repFamily "ERV1"; repLeft "4712"; repStart "-1719"; chrX rmsk exon 93570388 93570604 1167 - . gene_id "MER4B_Xq21.32"; transcript_id "MER4B_Xq21.32"; locus "MER4B_Xq21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0525"; repClass "LTR"; repEnd "2125"; repFamily "ERV1"; repLeft "1908"; repStart "-4633"; chrX rmsk exon 93570645 93570858 1371 - . gene_id "MER4B_Xq21.32"; transcript_id "MER4B_Xq21.32"; locus "MER4B_Xq21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0525"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "924"; repStart "-5609"; chrX rmsk exon 93570881 93571530 4345 - . gene_id "MER4B_Xq21.32"; transcript_id "MER4B_Xq21.32"; locus "MER4B_Xq21.32"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0525"; repClass "LTR"; repEnd "846"; repFamily "ERV1"; repLeft "198"; repStart "-5912"; ### MER4_Xq21.32a ### chrX rmsk gene 93571549 93573073 . - . gene_id "MER4_Xq21.32a"; transcript_id "MER4_Xq21.32a"; locus "MER4_Xq21.32a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0890"; model_cov "686"; model_pct "10.4"; chrX rmsk exon 93571549 93571902 1240 - . gene_id "MER4_Xq21.32a"; transcript_id "MER4_Xq21.32a"; locus "MER4_Xq21.32a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0890"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "2119"; repStart "-4170"; chrX rmsk exon 93571955 93572114 289 - . gene_id "MER4_Xq21.32a"; transcript_id "MER4_Xq21.32a"; locus "MER4_Xq21.32a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0890"; repClass "LTR"; repEnd "836"; repFamily "ERV1"; repLeft "620"; repStart "-5762"; chrX rmsk exon 93572124 93572258 2110 - . gene_id "MER4_Xq21.32a"; transcript_id "MER4_Xq21.32a"; locus "MER4_Xq21.32a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0890"; repClass "LTR"; repEnd "-1225"; repFamily "ERV1"; repLeft "-1386"; repStart "-7823"; chrX rmsk exon 93572602 93573073 3422 - . gene_id "MER4_Xq21.32a"; transcript_id "MER4_Xq21.32a"; locus "MER4_Xq21.32a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0890"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Xq21.32b ### chrX rmsk gene 93579990 93582140 . - . gene_id "HERVFRD_Xq21.32b"; transcript_id "HERVFRD_Xq21.32b"; locus "HERVFRD_Xq21.32b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0211"; model_cov "1462"; model_pct "20.3"; chrX rmsk exon 93579990 93581329 5787 - . gene_id "HERVFRD_Xq21.32b"; transcript_id "HERVFRD_Xq21.32b"; locus "HERVFRD_Xq21.32b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0211"; repClass "LTR"; repEnd "1466"; repFamily "ERV1"; repLeft "4"; repStart "-5739"; chrX rmsk exon 93581372 93582140 2944 - . gene_id "HERVFRD_Xq21.32b"; transcript_id "HERVFRD_Xq21.32b"; locus "HERVFRD_Xq21.32b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0211"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xq21.32b ### chrX rmsk gene 93716637 93722118 . - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3689"; model_cov "3469"; model_pct "61.2"; chrX rmsk exon 93716637 93717326 1777 - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3689"; repClass "LTR"; repEnd "5280"; repFamily "ERVL"; repLeft "4580"; repStart "-387"; chrX rmsk exon 93717374 93718135 1940 - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3689"; repClass "LTR"; repEnd "4565"; repFamily "ERVL"; repLeft "3663"; repStart "-1102"; chrX rmsk exon 93719709 93720007 1210 - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3689"; repClass "LTR"; repEnd "3192"; repFamily "ERVL"; repLeft "2887"; repStart "-2475"; chrX rmsk exon 93720049 93720205 1210 - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3689"; repClass "LTR"; repEnd "2886"; repFamily "ERVL"; repLeft "2714"; repStart "-2781"; chrX rmsk exon 93720758 93722118 2993 - . gene_id "ERVLE_Xq21.32b"; transcript_id "ERVLE_Xq21.32b"; locus "ERVLE_Xq21.32b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3689"; repClass "LTR"; repEnd "2706"; repFamily "ERVL"; repLeft "1316"; repStart "-2961"; ### LTR25_Xq21.32 ### chrX rmsk gene 93868316 93876245 . - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; category "prototype"; intModel "LTR25-int"; locid "LTR25-int_0150"; model_cov "6144"; model_pct "85.5"; chrX rmsk exon 93868316 93868948 4361 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "643"; repFamily "ERV1"; repLeft "1"; repStart "-201"; chrX rmsk exon 93868955 93869629 4454 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "7186"; repFamily "ERV1"; repLeft "6505"; repStart "-2"; chrX rmsk exon 93869960 93871283 7632 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "6205"; repFamily "ERV1"; repLeft "4779"; repStart "-983"; chrX rmsk exon 93871586 93871844 1935 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "4778"; repFamily "ERV1"; repLeft "4533"; repStart "-2410"; chrX rmsk exon 93871844 93875434 18960 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "3983"; repFamily "ERV1"; repLeft "262"; repStart "-3205"; chrX rmsk exon 93875439 93875516 434 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "20"; repStart "-7097"; chrX rmsk exon 93875520 93876245 3185 - . gene_id "LTR25_Xq21.32"; transcript_id "LTR25_Xq21.32"; locus "LTR25_Xq21.32"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0150"; repClass "LTR"; repEnd "830"; repFamily "ERV1"; repLeft "3"; repStart "-14"; ### HERVL_Xq21.32b ### chrX rmsk gene 93957315 93963891 . + . gene_id "HERVL_Xq21.32b"; transcript_id "HERVL_Xq21.32b"; locus "HERVL_Xq21.32b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1340"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 93957315 93957740 2932 + . gene_id "HERVL_Xq21.32b"; transcript_id "HERVL_Xq21.32b"; locus "HERVL_Xq21.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1340"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "2"; chrX rmsk exon 93957776 93957817 2932 + . gene_id "HERVL_Xq21.32b"; transcript_id "HERVL_Xq21.32b"; locus "HERVL_Xq21.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1340"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "414"; chrX rmsk exon 93957818 93963456 41961 + . gene_id "HERVL_Xq21.32b"; transcript_id "HERVL_Xq21.32b"; locus "HERVL_Xq21.32b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1340"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 93963457 93963891 2940 + . gene_id "HERVL_Xq21.32b"; transcript_id "HERVL_Xq21.32b"; locus "HERVL_Xq21.32b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1340"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP1_Xq21.32 ### chrX rmsk gene 94005286 94008420 . - . gene_id "HUERSP1_Xq21.32"; transcript_id "HUERSP1_Xq21.32"; locus "HUERSP1_Xq21.32"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0225"; model_cov "2415"; model_pct "38.6"; chrX rmsk exon 94005286 94007877 15032 - . gene_id "HUERSP1_Xq21.32"; transcript_id "HUERSP1_Xq21.32"; locus "HUERSP1_Xq21.32"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0225"; repClass "LTR"; repEnd "2416"; repFamily "ERV1"; repLeft "1"; repStart "-3847"; chrX rmsk exon 94007878 94008420 3649 - . gene_id "HUERSP1_Xq21.32"; transcript_id "HUERSP1_Xq21.32"; locus "HUERSP1_Xq21.32"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0225"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "159"; repStart "0"; ### PABLB_Xq21.32a ### chrX rmsk gene 94009212 94015552 . - . gene_id "PABLB_Xq21.32a"; transcript_id "PABLB_Xq21.32a"; locus "PABLB_Xq21.32a"; category "oneside"; intModel "PABL_B-int"; locid "PABL_B-int_0106"; model_cov "5798"; model_pct "81.4"; chrX rmsk exon 94009212 94009348 2134 - . gene_id "PABLB_Xq21.32a"; transcript_id "PABLB_Xq21.32a"; locus "PABLB_Xq21.32a"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0106"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "94"; repStart "-435"; chrX rmsk exon 94009664 94009756 2134 - . gene_id "PABLB_Xq21.32a"; transcript_id "PABLB_Xq21.32a"; locus "PABLB_Xq21.32a"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0106"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "1"; repStart "-574"; chrX rmsk exon 94009757 94015552 46656 - . gene_id "PABLB_Xq21.32a"; transcript_id "PABLB_Xq21.32a"; locus "PABLB_Xq21.32a"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0106"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "1324"; repStart "0"; ### PABLB_Xq21.32b ### chrX rmsk gene 94015589 94017580 . - . gene_id "PABLB_Xq21.32b"; transcript_id "PABLB_Xq21.32b"; locus "PABLB_Xq21.32b"; category "oneside"; intModel "PABL_B-int"; locid "PABL_B-int_0107"; model_cov "1321"; model_pct "18.5"; chrX rmsk exon 94015589 94016908 46656 - . gene_id "PABLB_Xq21.32b"; transcript_id "PABLB_Xq21.32b"; locus "PABLB_Xq21.32b"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0107"; repClass "LTR"; repEnd "7122"; repFamily "ERV1"; repLeft "5801"; repStart "0"; chrX rmsk exon 94016910 94017580 4639 - . gene_id "PABLB_Xq21.32b"; transcript_id "PABLB_Xq21.32b"; locus "PABLB_Xq21.32b"; repName "PABL_B"; geneRegion "ltr"; locid "PABL_B-int_0107"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_Xq21.32b ### chrX rmsk gene 94043769 94045449 . - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0893"; model_cov "1004"; model_pct "15.2"; chrX rmsk exon 94043769 94044205 2744 - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0893"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrX rmsk exon 94044207 94044318 657 - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0893"; repClass "LTR"; repEnd "6592"; repFamily "ERV1"; repLeft "6492"; repStart "-6"; chrX rmsk exon 94044316 94044730 2480 - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0893"; repClass "LTR"; repEnd "4240"; repFamily "ERV1"; repLeft "3835"; repStart "-2358"; chrX rmsk exon 94044731 94045109 1236 - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0893"; repClass "LTR"; repEnd "3678"; repFamily "ERV1"; repLeft "3304"; repStart "-2920"; chrX rmsk exon 94045323 94045449 616 - . gene_id "MER4_Xq21.32b"; transcript_id "MER4_Xq21.32b"; locus "MER4_Xq21.32b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0893"; repClass "LTR"; repEnd "3277"; repFamily "ERV1"; repLeft "3152"; repStart "-3321"; ### MER4_Xq21.32c ### chrX rmsk gene 94045452 94050941 . - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; category "opposite*"; intModel "MER4-int"; locid "MER4-int_0895"; model_cov "1631"; model_pct "24.7"; chrX rmsk exon 94045452 94045695 4071 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; prev_strand "+"; repClass "LTR"; repEnd "2031"; repFamily "ERV1"; repLeft "-4567"; repStart "1785"; chrX rmsk exon 94046848 94047277 4071 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; prev_strand "+"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2032"; chrX rmsk exon 94047817 94047867 1241 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; prev_strand "+"; repClass "LTR"; repEnd "2786"; repFamily "ERV1"; repLeft "-3812"; repStart "2737"; chrX rmsk exon 94048172 94048342 1241 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; prev_strand "+"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "-3660"; repStart "2787"; chrX rmsk exon 94048646 94048830 1241 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; prev_strand "+"; repClass "LTR"; repEnd "3158"; repFamily "ERV1"; repLeft "-3440"; repStart "2939"; chrX rmsk exon 94048830 94049637 3281 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; repClass "LTR"; repEnd "1813"; repFamily "ERV1"; repLeft "993"; repStart "-4785"; chrX rmsk exon 94049790 94050479 3393 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0895"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "1"; repStart "-5786"; chrX rmsk exon 94050483 94050941 2946 - . gene_id "MER4_Xq21.32c"; transcript_id "MER4_Xq21.32c"; locus "MER4_Xq21.32c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0895"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq21.32c ### chrX rmsk gene 94079616 94080486 . - . gene_id "HERVL_Xq21.32c"; transcript_id "HERVL_Xq21.32c"; locus "HERVL_Xq21.32c"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1341"; model_cov "925"; model_pct "16.4"; chrX rmsk exon 94079616 94080486 6056 - . gene_id "HERVL_Xq21.32c"; transcript_id "HERVL_Xq21.32c"; locus "HERVL_Xq21.32c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1341"; repClass "LTR"; repEnd "4569"; repFamily "ERVL"; repLeft "3644"; repStart "-1085"; ### ERV316A3_Xq21.32 ### chrX rmsk gene 94094367 94096099 . - . gene_id "ERV316A3_Xq21.32"; transcript_id "ERV316A3_Xq21.32"; locus "ERV316A3_Xq21.32"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2799"; model_cov "1497"; model_pct "28.6"; chrX rmsk exon 94094367 94094706 751 - . gene_id "ERV316A3_Xq21.32"; transcript_id "ERV316A3_Xq21.32"; locus "ERV316A3_Xq21.32"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2799"; repClass "LTR"; repEnd "369"; repFamily "ERVL"; repLeft "1"; repStart "-93"; chrX rmsk exon 94094711 94096099 4045 - . gene_id "ERV316A3_Xq21.32"; transcript_id "ERV316A3_Xq21.32"; locus "ERV316A3_Xq21.32"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2799"; repClass "LTR"; repEnd "5222"; repFamily "ERVL"; repLeft "3725"; repStart "-4"; ### HERVL_Xq21.32d ### chrX rmsk gene 94118430 94119415 . + . gene_id "HERVL_Xq21.32d"; transcript_id "HERVL_Xq21.32d"; locus "HERVL_Xq21.32d"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1342"; model_cov "997"; model_pct "17.6"; chrX rmsk exon 94118430 94119415 7568 + . gene_id "HERVL_Xq21.32d"; transcript_id "HERVL_Xq21.32d"; locus "HERVL_Xq21.32d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1342"; repClass "LTR"; repEnd "5235"; repFamily "ERVL"; repLeft "-419"; repStart "4238"; ### ERVLB4_Xq21.33a ### chrX rmsk gene 94347768 94349093 . + . gene_id "ERVLB4_Xq21.33a"; transcript_id "ERVLB4_Xq21.33a"; locus "ERVLB4_Xq21.33a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1853"; model_cov "925"; model_pct "16.2"; chrX rmsk exon 94347768 94348270 1560 + . gene_id "ERVLB4_Xq21.33a"; transcript_id "ERVLB4_Xq21.33a"; locus "ERVLB4_Xq21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1853"; repClass "LTR"; repEnd "4634"; repFamily "ERVL"; repLeft "-1080"; repStart "4122"; chrX rmsk exon 94348691 94349093 1560 + . gene_id "ERVLB4_Xq21.33a"; transcript_id "ERVLB4_Xq21.33a"; locus "ERVLB4_Xq21.33a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1853"; repClass "LTR"; repEnd "5048"; repFamily "ERVL"; repLeft "-666"; repStart "4635"; ### ERVLB4_Xq21.33b ### chrX rmsk gene 94413885 94416118 . - . gene_id "ERVLB4_Xq21.33b"; transcript_id "ERVLB4_Xq21.33b"; locus "ERVLB4_Xq21.33b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1854"; model_cov "1594"; model_pct "27.9"; chrX rmsk exon 94413885 94414475 2565 - . gene_id "ERVLB4_Xq21.33b"; transcript_id "ERVLB4_Xq21.33b"; locus "ERVLB4_Xq21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1854"; repClass "LTR"; repEnd "4028"; repFamily "ERVL"; repLeft "3388"; repStart "-1686"; chrX rmsk exon 94414790 94414901 2565 - . gene_id "ERVLB4_Xq21.33b"; transcript_id "ERVLB4_Xq21.33b"; locus "ERVLB4_Xq21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1854"; repClass "LTR"; repEnd "3387"; repFamily "ERVL"; repLeft "3289"; repStart "-2327"; chrX rmsk exon 94415305 94415626 1710 - . gene_id "ERVLB4_Xq21.33b"; transcript_id "ERVLB4_Xq21.33b"; locus "ERVLB4_Xq21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1854"; repClass "LTR"; repEnd "3293"; repFamily "ERVL"; repLeft "2968"; repStart "-2421"; chrX rmsk exon 94415610 94416118 2723 - . gene_id "ERVLB4_Xq21.33b"; transcript_id "ERVLB4_Xq21.33b"; locus "ERVLB4_Xq21.33b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1854"; repClass "LTR"; repEnd "2288"; repFamily "ERVL"; repLeft "1757"; repStart "-3426"; ### HUERSP3B_Xq21.33 ### chrX rmsk gene 94439682 94442849 . - . gene_id "HUERSP3B_Xq21.33"; transcript_id "HUERSP3B_Xq21.33"; locus "HUERSP3B_Xq21.33"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0146"; model_cov "1227"; model_pct "16.5"; chrX rmsk exon 94439682 94439928 2969 - . gene_id "HUERSP3B_Xq21.33"; transcript_id "HUERSP3B_Xq21.33"; locus "HUERSP3B_Xq21.33"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0146"; repClass "LTR"; repEnd "262"; repFamily "ERV1"; repLeft "1"; repStart "-350"; chrX rmsk exon 94440583 94441800 8158 - . gene_id "HUERSP3B_Xq21.33"; transcript_id "HUERSP3B_Xq21.33"; locus "HUERSP3B_Xq21.33"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0146"; repClass "LTR"; repEnd "6945"; repFamily "ERV1"; repLeft "5718"; repStart "-473"; chrX rmsk exon 94442255 94442849 3177 - . gene_id "HUERSP3B_Xq21.33"; transcript_id "HUERSP3B_Xq21.33"; locus "HUERSP3B_Xq21.33"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3b-int_0146"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xq21.33c ### chrX rmsk gene 94445090 94449049 . + . gene_id "ERVLB4_Xq21.33c"; transcript_id "ERVLB4_Xq21.33c"; locus "ERVLB4_Xq21.33c"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1855"; model_cov "3278"; model_pct "57.4"; chrX rmsk exon 94445090 94445379 1371 + . gene_id "ERVLB4_Xq21.33c"; transcript_id "ERVLB4_Xq21.33c"; locus "ERVLB4_Xq21.33c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1855"; repClass "LTR"; repEnd "308"; repFamily "ERVL"; repLeft "-248"; repStart "9"; chrX rmsk exon 94445386 94446786 7743 + . gene_id "ERVLB4_Xq21.33c"; transcript_id "ERVLB4_Xq21.33c"; locus "ERVLB4_Xq21.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1855"; repClass "LTR"; repEnd "3523"; repFamily "ERVL"; repLeft "-2191"; repStart "2084"; chrX rmsk exon 94446807 94448481 7150 + . gene_id "ERVLB4_Xq21.33c"; transcript_id "ERVLB4_Xq21.33c"; locus "ERVLB4_Xq21.33c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1855"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3875"; chrX rmsk exon 94448482 94449049 2098 + . gene_id "ERVLB4_Xq21.33c"; transcript_id "ERVLB4_Xq21.33c"; locus "ERVLB4_Xq21.33c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1855"; repClass "LTR"; repEnd "550"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### HERVL_Xq21.33a ### chrX rmsk gene 94477520 94479239 . + . gene_id "HERVL_Xq21.33a"; transcript_id "HERVL_Xq21.33a"; locus "HERVL_Xq21.33a"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1344"; model_cov "1754"; model_pct "31.0"; chrX rmsk exon 94477520 94479239 12531 + . gene_id "HERVL_Xq21.33a"; transcript_id "HERVL_Xq21.33a"; locus "HERVL_Xq21.33a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1344"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "-412"; repStart "3488"; ### MER4_Xq21.33a ### chrX rmsk gene 94479770 94481127 . + . gene_id "MER4_Xq21.33a"; transcript_id "MER4_Xq21.33a"; locus "MER4_Xq21.33a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0896"; model_cov "933"; model_pct "14.1"; chrX rmsk exon 94479770 94480274 2768 + . gene_id "MER4_Xq21.33a"; transcript_id "MER4_Xq21.33a"; locus "MER4_Xq21.33a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0896"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 94480279 94481127 3469 + . gene_id "MER4_Xq21.33a"; transcript_id "MER4_Xq21.33a"; locus "MER4_Xq21.33a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0896"; repClass "LTR"; repEnd "936"; repFamily "ERV1"; repLeft "-5662"; repStart "3"; ### MER4_Xq21.33b ### chrX rmsk gene 94486483 94490327 . + . gene_id "MER4_Xq21.33b"; transcript_id "MER4_Xq21.33b"; locus "MER4_Xq21.33b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0898"; model_cov "3563"; model_pct "54.0"; chrX rmsk exon 94486483 94487488 2205 + . gene_id "MER4_Xq21.33b"; transcript_id "MER4_Xq21.33b"; locus "MER4_Xq21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0898"; repClass "LTR"; repEnd "2253"; repFamily "ERV1"; repLeft "-4345"; repStart "1451"; chrX rmsk exon 94487483 94490174 13126 + . gene_id "MER4_Xq21.33b"; transcript_id "MER4_Xq21.33b"; locus "MER4_Xq21.33b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0898"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "3837"; chrX rmsk exon 94490176 94490327 1103 + . gene_id "MER4_Xq21.33b"; transcript_id "MER4_Xq21.33b"; locus "MER4_Xq21.33b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0898"; repClass "LTR"; repEnd "148"; repFamily "ERV1"; repLeft "-324"; repStart "1"; ### HML5_Xq21.33 ### chrX rmsk gene 94491677 94498448 . + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0139"; model_cov "4999"; model_pct "73.1"; chrX rmsk exon 94491677 94491934 1374 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "251"; chrX rmsk exon 94491937 94492629 4694 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "3"; chrX rmsk exon 94492991 94493108 671 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "2446"; repFamily "ERVK"; repLeft "-4391"; repStart "2329"; chrX rmsk exon 94493112 94495855 20170 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "5377"; repFamily "ERVK"; repLeft "-1460"; repStart "2623"; chrX rmsk exon 94496498 94497969 10555 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "5401"; chrX rmsk exon 94497972 94498448 2751 + . gene_id "HML5_Xq21.33"; transcript_id "HML5_Xq21.33"; locus "HML5_Xq21.33"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0139"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "3"; ### HERVL_Xq21.33b ### chrX rmsk gene 94553917 94556191 . + . gene_id "HERVL_Xq21.33b"; transcript_id "HERVL_Xq21.33b"; locus "HERVL_Xq21.33b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1345"; model_cov "1110"; model_pct "19.6"; chrX rmsk exon 94553917 94554359 3038 + . gene_id "HERVL_Xq21.33b"; transcript_id "HERVL_Xq21.33b"; locus "HERVL_Xq21.33b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1345"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 94554670 94555455 5794 + . gene_id "HERVL_Xq21.33b"; transcript_id "HERVL_Xq21.33b"; locus "HERVL_Xq21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1345"; repClass "LTR"; repEnd "781"; repFamily "ERVL"; repLeft "-4873"; repStart "1"; chrX rmsk exon 94555454 94555778 2215 + . gene_id "HERVL_Xq21.33b"; transcript_id "HERVL_Xq21.33b"; locus "HERVL_Xq21.33b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1345"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5324"; chrX rmsk exon 94555782 94556191 2760 + . gene_id "HERVL_Xq21.33b"; transcript_id "HERVL_Xq21.33b"; locus "HERVL_Xq21.33b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1345"; repClass "LTR"; repEnd "447"; repFamily "ERVL"; repLeft "-6"; repStart "4"; ### MER4_Xq21.33c ### chrX rmsk gene 94569701 94572846 . - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0899"; model_cov "2091"; model_pct "31.7"; chrX rmsk exon 94569701 94569783 566 - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0899"; repClass "LTR"; repEnd "371"; repFamily "ERV1"; repLeft "288"; repStart "-293"; chrX rmsk exon 94569815 94569963 789 - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0899"; repClass "LTR"; repEnd "147"; repFamily "ERV1"; repLeft "1"; repStart "-517"; chrX rmsk exon 94569970 94570858 9931 - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0899"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5720"; repStart "-2"; chrX rmsk exon 94571155 94571412 9931 - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0899"; repClass "LTR"; repEnd "5719"; repFamily "ERV1"; repLeft "5466"; repStart "-879"; chrX rmsk exon 94571894 94572846 9931 - . gene_id "MER4_Xq21.33c"; transcript_id "MER4_Xq21.33c"; locus "MER4_Xq21.33c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0899"; repClass "LTR"; repEnd "5465"; repFamily "ERV1"; repLeft "4503"; repStart "-1133"; ### HERVFRD_Xq21.33a ### chrX rmsk gene 94653702 94655688 . + . gene_id "HERVFRD_Xq21.33a"; transcript_id "HERVFRD_Xq21.33a"; locus "HERVFRD_Xq21.33a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0212"; model_cov "1361"; model_pct "18.9"; chrX rmsk exon 94653702 94654716 6004 + . gene_id "HERVFRD_Xq21.33a"; transcript_id "HERVFRD_Xq21.33a"; locus "HERVFRD_Xq21.33a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0212"; repClass "LTR"; repEnd "6027"; repFamily "ERV1"; repLeft "-1178"; repStart "4981"; chrX rmsk exon 94654716 94655032 1950 + . gene_id "HERVFRD_Xq21.33a"; transcript_id "HERVFRD_Xq21.33a"; locus "HERVFRD_Xq21.33a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0212"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "-8"; repStart "6882"; chrX rmsk exon 94655033 94655688 2335 + . gene_id "HERVFRD_Xq21.33a"; transcript_id "HERVFRD_Xq21.33a"; locus "HERVFRD_Xq21.33a"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0212"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; ### MER4B_Xq21.33 ### chrX rmsk gene 94683482 94693066 . - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0526"; model_cov "6048"; model_pct "89.5"; chrX rmsk exon 94683482 94684084 3867 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 94684100 94684299 2012 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "6743"; repFamily "ERV1"; repLeft "6520"; repStart "-15"; chrX rmsk exon 94684325 94685144 3879 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "6519"; repFamily "ERV1"; repLeft "5658"; repStart "-239"; chrX rmsk exon 94685872 94686408 2707 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "5556"; repFamily "ERV1"; repLeft "5010"; repStart "-1202"; chrX rmsk exon 94686406 94687441 5072 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "4482"; repFamily "ERV1"; repLeft "3021"; repStart "-2276"; chrX rmsk exon 94687442 94687614 1014 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "3887"; repFamily "ERV1"; repLeft "3717"; repStart "-2871"; chrX rmsk exon 94687617 94689328 6973 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "3013"; repFamily "ERV1"; repLeft "924"; repStart "-3745"; chrX rmsk exon 94691480 94691941 2044 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "1189"; repFamily "ERV1"; repLeft "720"; repStart "-5569"; chrX rmsk exon 94691933 94692143 1087 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "390"; repFamily "ERV1"; repLeft "161"; repStart "-6368"; chrX rmsk exon 94692473 94693066 3700 - . gene_id "MER4B_Xq21.33"; transcript_id "MER4B_Xq21.33"; locus "MER4B_Xq21.33"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0526"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### MER4_Xq21.33d ### chrX rmsk gene 94696225 94698819 . + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; category "unknown"; intModel "MER4-int"; locid "MER4-int_0900"; model_cov "725"; model_pct "11.0"; chrX rmsk exon 94696225 94696679 2632 + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0900"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 94696683 94697192 2133 + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0900"; repClass "LTR"; repEnd "562"; repFamily "ERV1"; repLeft "-6036"; repStart "1"; chrX rmsk exon 94698390 94698418 231 + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0900"; repClass "LTR"; repEnd "175"; repFamily "ERV1"; repLeft "-489"; repStart "147"; chrX rmsk exon 94698613 94698691 314 + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0900"; repClass "LTR"; repEnd "821"; repFamily "ERV1"; repLeft "-5777"; repStart "751"; chrX rmsk exon 94698723 94698819 295 + . gene_id "MER4_Xq21.33d"; transcript_id "MER4_Xq21.33d"; locus "MER4_Xq21.33d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0900"; repClass "LTR"; repEnd "1349"; repFamily "ERV1"; repLeft "-5249"; repStart "1255"; ### HERVH_Xq21.33a ### chrX rmsk gene 94698820 94705089 . - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1257"; model_cov "4919"; model_pct "63.8"; chrX rmsk exon 94698820 94699270 3573 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 94699271 94699635 2412 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 94699634 94699854 1362 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chrX rmsk exon 94699852 94700524 4288 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chrX rmsk exon 94700515 94701006 3294 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3503"; repStart "-3719"; chrX rmsk exon 94701009 94701158 914 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 94701138 94704174 20486 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 94704179 94704626 3482 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "2"; repStart "-4"; chrX rmsk exon 94704639 94705089 3544 - . gene_id "HERVH_Xq21.33a"; transcript_id "HERVH_Xq21.33a"; locus "HERVH_Xq21.33a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1257"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_Xq21.33c ### chrX rmsk gene 94819231 94825365 . - . gene_id "HERVL_Xq21.33c"; transcript_id "HERVL_Xq21.33c"; locus "HERVL_Xq21.33c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1346"; model_cov "5473"; model_pct "96.8"; chrX rmsk exon 94819231 94819604 3026 - . gene_id "HERVL_Xq21.33c"; transcript_id "HERVL_Xq21.33c"; locus "HERVL_Xq21.33c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1346"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "15"; repStart "-58"; chrX rmsk exon 94819925 94825365 40908 - . gene_id "HERVL_Xq21.33c"; transcript_id "HERVL_Xq21.33c"; locus "HERVL_Xq21.33c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1346"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "181"; repStart "0"; ### ERVLB4_Xq21.33d ### chrX rmsk gene 94890069 94892405 . - . gene_id "ERVLB4_Xq21.33d"; transcript_id "ERVLB4_Xq21.33d"; locus "ERVLB4_Xq21.33d"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1856"; model_cov "941"; model_pct "16.5"; chrX rmsk exon 94890069 94890704 2544 - . gene_id "ERVLB4_Xq21.33d"; transcript_id "ERVLB4_Xq21.33d"; locus "ERVLB4_Xq21.33d"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-B4-int_1856"; repClass "LTR"; repEnd "667"; repFamily "ERVL"; repLeft "55"; repStart "-50"; chrX rmsk exon 94890705 94890879 5084 - . gene_id "ERVLB4_Xq21.33d"; transcript_id "ERVLB4_Xq21.33d"; locus "ERVLB4_Xq21.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1856"; repClass "LTR"; repEnd "1742"; repFamily "ERVL"; repLeft "1572"; repStart "-3972"; chrX rmsk exon 94891180 94891923 5084 - . gene_id "ERVLB4_Xq21.33d"; transcript_id "ERVLB4_Xq21.33d"; locus "ERVLB4_Xq21.33d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1856"; repClass "LTR"; repEnd "1571"; repFamily "ERVL"; repLeft "800"; repStart "-4143"; chrX rmsk exon 94892252 94892405 1029 - . gene_id "ERVLB4_Xq21.33d"; transcript_id "ERVLB4_Xq21.33d"; locus "ERVLB4_Xq21.33d"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1856"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "283"; repStart "-124"; ### HERVL_Xq21.33d ### chrX rmsk gene 94915570 94923052 . + . gene_id "HERVL_Xq21.33d"; transcript_id "HERVL_Xq21.33d"; locus "HERVL_Xq21.33d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1348"; model_cov "5639"; model_pct "99.7"; chrX rmsk exon 94915570 94916153 1867 + . gene_id "HERVL_Xq21.33d"; transcript_id "HERVL_Xq21.33d"; locus "HERVL_Xq21.33d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1348"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 94916154 94921574 34897 + . gene_id "HERVL_Xq21.33d"; transcript_id "HERVL_Xq21.33d"; locus "HERVL_Xq21.33d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1348"; repClass "LTR"; repEnd "5419"; repFamily "ERVL"; repLeft "-235"; repStart "1"; chrX rmsk exon 94922213 94922450 34897 + . gene_id "HERVL_Xq21.33d"; transcript_id "HERVL_Xq21.33d"; locus "HERVL_Xq21.33d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1348"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "-13"; repStart "5420"; chrX rmsk exon 94922453 94923052 2092 + . gene_id "HERVL_Xq21.33d"; transcript_id "HERVL_Xq21.33d"; locus "HERVL_Xq21.33d"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1348"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVFRD_Xq21.33b ### chrX rmsk gene 94965188 94967813 . + . gene_id "HERVFRD_Xq21.33b"; transcript_id "HERVFRD_Xq21.33b"; locus "HERVFRD_Xq21.33b"; category "internal"; intModel "MER50-int"; locid "MER50-int_0213"; model_cov "2226"; model_pct "30.9"; chrX rmsk exon 94965188 94966854 9750 + . gene_id "HERVFRD_Xq21.33b"; transcript_id "HERVFRD_Xq21.33b"; locus "HERVFRD_Xq21.33b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0213"; repClass "LTR"; repEnd "2737"; repFamily "ERV1"; repLeft "-4468"; repStart "1136"; chrX rmsk exon 94967165 94967813 9750 + . gene_id "HERVFRD_Xq21.33b"; transcript_id "HERVFRD_Xq21.33b"; locus "HERVFRD_Xq21.33b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0213"; repClass "LTR"; repEnd "3363"; repFamily "ERV1"; repLeft "-3842"; repStart "2738"; ### HUERSP3_Xq21.33 ### chrX rmsk gene 95074129 95079880 . - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0231"; model_cov "4493"; model_pct "50.4"; chrX rmsk exon 95074129 95074738 2486 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "4"; repStart "0"; chrX rmsk exon 95074752 95075010 1247 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "8893"; repFamily "ERV1"; repLeft "8702"; repStart "-26"; chrX rmsk exon 95075456 95075580 448 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "6860"; repStart "-1937"; chrX rmsk exon 95075579 95076266 3843 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "6910"; repFamily "ERV1"; repLeft "6214"; repStart "-2009"; chrX rmsk exon 95076251 95076659 2646 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "5323"; repFamily "ERV1"; repLeft "4901"; repStart "-3596"; chrX rmsk exon 95076659 95076797 891 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4539"; repStart "-4239"; chrX rmsk exon 95076791 95078959 7956 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "742"; repStart "-5635"; chrX rmsk exon 95078972 95079267 1470 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "2075"; repFamily "ERV1"; repLeft "1774"; repStart "-6844"; chrX rmsk exon 95079295 95079364 294 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "79"; repFamily "ERV1"; repLeft "1"; repStart "-8840"; chrX rmsk exon 95079365 95079880 2222 - . gene_id "HUERSP3_Xq21.33"; transcript_id "HUERSP3_Xq21.33"; locus "HUERSP3_Xq21.33"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0231"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "70"; repStart "0"; ### MER4_Xq21.33e ### chrX rmsk gene 95083159 95084805 . - . gene_id "MER4_Xq21.33e"; transcript_id "MER4_Xq21.33e"; locus "MER4_Xq21.33e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0903"; model_cov "1161"; model_pct "17.6"; chrX rmsk exon 95083159 95083465 1758 - . gene_id "MER4_Xq21.33e"; transcript_id "MER4_Xq21.33e"; locus "MER4_Xq21.33e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0903"; repClass "LTR"; repEnd "2102"; repFamily "ERV1"; repLeft "1804"; repStart "-4496"; chrX rmsk exon 95083464 95083844 1412 - . gene_id "MER4_Xq21.33e"; transcript_id "MER4_Xq21.33e"; locus "MER4_Xq21.33e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0903"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "1005"; repStart "-5330"; chrX rmsk exon 95083831 95084407 2814 - . gene_id "MER4_Xq21.33e"; transcript_id "MER4_Xq21.33e"; locus "MER4_Xq21.33e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0903"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "1"; repStart "-5997"; chrX rmsk exon 95084411 95084805 2226 - . gene_id "MER4_Xq21.33e"; transcript_id "MER4_Xq21.33e"; locus "MER4_Xq21.33e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0903"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "55"; repStart "0"; ### HML3_Xq21.33a ### chrX rmsk gene 95103649 95107926 . - . gene_id "HML3_Xq21.33a"; transcript_id "HML3_Xq21.33a"; locus "HML3_Xq21.33a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0248"; model_cov "3021"; model_pct "50.2"; chrX rmsk exon 95103649 95103841 1261 - . gene_id "HML3_Xq21.33a"; transcript_id "HML3_Xq21.33a"; locus "HML3_Xq21.33a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0248"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "317"; repStart "0"; chrX rmsk exon 95103842 95104739 7443 - . gene_id "HML3_Xq21.33a"; transcript_id "HML3_Xq21.33a"; locus "HML3_Xq21.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0248"; repClass "LTR"; repEnd "4533"; repFamily "ERVK"; repLeft "3636"; repStart "-1488"; chrX rmsk exon 95104739 95105237 3776 - . gene_id "HML3_Xq21.33a"; transcript_id "HML3_Xq21.33a"; locus "HML3_Xq21.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0248"; repClass "LTR"; repEnd "2906"; repFamily "ERVK"; repLeft "2409"; repStart "-3115"; chrX rmsk exon 95106352 95107926 16795 - . gene_id "HML3_Xq21.33a"; transcript_id "HML3_Xq21.33a"; locus "HML3_Xq21.33a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0248"; repClass "LTR"; repEnd "2414"; repFamily "ERVK"; repLeft "787"; repStart "-3607"; ### HML3_Xq21.33b ### chrX rmsk gene 95107996 95109260 . - . gene_id "HML3_Xq21.33b"; transcript_id "HML3_Xq21.33b"; locus "HML3_Xq21.33b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0249"; model_cov "785"; model_pct "13.0"; chrX rmsk exon 95107996 95108753 16795 - . gene_id "HML3_Xq21.33b"; transcript_id "HML3_Xq21.33b"; locus "HML3_Xq21.33b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0249"; repClass "LTR"; repEnd "2414"; repFamily "ERVK"; repLeft "1629"; repStart "-3607"; chrX rmsk exon 95108754 95109260 3935 - . gene_id "HML3_Xq21.33b"; transcript_id "HML3_Xq21.33b"; locus "HML3_Xq21.33b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0249"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVL_Xq21.33a ### chrX rmsk gene 95140887 95143162 . - . gene_id "ERVL_Xq21.33a"; transcript_id "ERVL_Xq21.33a"; locus "ERVL_Xq21.33a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0491"; model_cov "1323"; model_pct "23.0"; chrX rmsk exon 95140887 95141250 1572 - . gene_id "ERVL_Xq21.33a"; transcript_id "ERVL_Xq21.33a"; locus "ERVL_Xq21.33a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-int_0491"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "3"; repStart "-48"; chrX rmsk exon 95141252 95142338 6801 - . gene_id "ERVL_Xq21.33a"; transcript_id "ERVL_Xq21.33a"; locus "ERVL_Xq21.33a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0491"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "4636"; repStart "0"; chrX rmsk exon 95142952 95143162 6801 - . gene_id "ERVL_Xq21.33a"; transcript_id "ERVL_Xq21.33a"; locus "ERVL_Xq21.33a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0491"; repClass "LTR"; repEnd "4635"; repFamily "ERVL"; repLeft "4433"; repStart "-1122"; ### ERVLB4_Xq21.33e ### chrX rmsk gene 95549905 95552927 . - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1858"; model_cov "1801"; model_pct "31.5"; chrX rmsk exon 95549905 95550138 1393 - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1858"; repClass "LTR"; repEnd "236"; repFamily "ERVL"; repLeft "3"; repStart "-161"; chrX rmsk exon 95550386 95551431 6527 - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1858"; repClass "LTR"; repEnd "1803"; repFamily "ERVL"; repLeft "797"; repStart "-3911"; chrX rmsk exon 95551741 95552505 6527 - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1858"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "1"; repStart "-4918"; chrX rmsk exon 95552506 95552572 270 - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1858"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "331"; repStart "0"; chrX rmsk exon 95552616 95552927 1561 - . gene_id "ERVLB4_Xq21.33e"; transcript_id "ERVLB4_Xq21.33e"; locus "ERVLB4_Xq21.33e"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1858"; repClass "LTR"; repEnd "347"; repFamily "ERVL"; repLeft "12"; repStart "-50"; ### MER41_Xq21.33a ### chrX rmsk gene 95627338 95629750 . + . gene_id "MER41_Xq21.33a"; transcript_id "MER41_Xq21.33a"; locus "MER41_Xq21.33a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0602"; model_cov "2304"; model_pct "38.7"; chrX rmsk exon 95627338 95627557 1257 + . gene_id "MER41_Xq21.33a"; transcript_id "MER41_Xq21.33a"; locus "MER41_Xq21.33a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0602"; repClass "LTR"; repEnd "-98"; repFamily "ERV1"; repLeft "-6044"; repStart "-316"; chrX rmsk exon 95627606 95628395 7742 + . gene_id "MER41_Xq21.33a"; transcript_id "MER41_Xq21.33a"; locus "MER41_Xq21.33a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0602"; repClass "LTR"; repEnd "934"; repFamily "ERV1"; repLeft "-5012"; repStart "107"; chrX rmsk exon 95628442 95629750 7742 + . gene_id "MER41_Xq21.33a"; transcript_id "MER41_Xq21.33a"; locus "MER41_Xq21.33a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0602"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-3589"; repStart "1098"; ### HERVL_Xq21.33e ### chrX rmsk gene 95713089 95715949 . + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1350"; model_cov "1753"; model_pct "31.0"; chrX rmsk exon 95713089 95713455 2788 + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1350"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-72"; repStart "1"; chrX rmsk exon 95713676 95713955 2083 + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1350"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "-5372"; repStart "1"; chrX rmsk exon 95713949 95715404 11599 + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1350"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4182"; chrX rmsk exon 95715405 95715853 2905 + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1350"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-75"; chrX rmsk exon 95715912 95715949 593 + . gene_id "HERVL_Xq21.33e"; transcript_id "HERVL_Xq21.33e"; locus "HERVL_Xq21.33e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1350"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "-2"; repStart "405"; ### HERVL_Xq21.33f ### chrX rmsk gene 95959032 95965914 . - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1351"; model_cov "5720"; model_pct "100.0"; chrX rmsk exon 95959032 95959067 3253 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "405"; repStart "0"; chrX rmsk exon 95959100 95959483 3253 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "2"; repStart "-40"; chrX rmsk exon 95959484 95961729 16907 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3437"; repStart "0"; chrX rmsk exon 95961846 95965179 25736 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "3436"; repFamily "ERVL"; repLeft "104"; repStart "-2218"; chrX rmsk exon 95965176 95965355 1160 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "175"; repFamily "ERVL"; repLeft "4"; repStart "-5479"; chrX rmsk exon 95965358 95965411 327 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "391"; repStart "0"; chrX rmsk exon 95965497 95965914 3017 - . gene_id "HERVL_Xq21.33f"; transcript_id "HERVL_Xq21.33f"; locus "HERVL_Xq21.33f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1351"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "-33"; ### ERVL_Xq21.33b ### chrX rmsk gene 96231430 96235993 . + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0493"; model_cov "3815"; model_pct "66.3"; chrX rmsk exon 96231430 96231617 1172 + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0493"; repClass "LTR"; repEnd "190"; repFamily "ERVL"; repLeft "-325"; repStart "3"; chrX rmsk exon 96231618 96232447 4641 + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0493"; repClass "LTR"; repEnd "1553"; repFamily "ERVL"; repLeft "-4204"; repStart "726"; chrX rmsk exon 96232453 96233549 7108 + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0493"; repClass "LTR"; repEnd "3730"; repFamily "ERVL"; repLeft "-2027"; repStart "2612"; chrX rmsk exon 96233556 96235378 10964 + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0493"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3887"; chrX rmsk exon 96235379 96235993 2444 + . gene_id "ERVL_Xq21.33b"; transcript_id "ERVL_Xq21.33b"; locus "ERVL_Xq21.33b"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-int_0493"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-4"; repStart "-85"; ### ERVLB4_Xq21.33f ### chrX rmsk gene 96496913 96501147 . + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1859"; model_cov "2804"; model_pct "49.1"; chrX rmsk exon 96496913 96497024 676 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "113"; repFamily "ERVL"; repLeft "-443"; repStart "1"; chrX rmsk exon 96497032 96497163 468 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "-159"; repStart "224"; chrX rmsk exon 96497164 96497320 13512 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "3047"; repFamily "ERVL"; repLeft "-2667"; repStart "2901"; chrX rmsk exon 96497631 96499582 13512 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "5087"; repFamily "ERVL"; repLeft "-627"; repStart "3048"; chrX rmsk exon 96499804 96500000 13512 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "5278"; repFamily "ERVL"; repLeft "-436"; repStart "5088"; chrX rmsk exon 96500001 96500200 2109 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "5485"; repFamily "ERVL"; repLeft "-229"; repStart "5279"; chrX rmsk exon 96500485 96500713 2109 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "-5"; repStart "5486"; chrX rmsk exon 96500720 96501147 1835 + . gene_id "ERVLB4_Xq21.33f"; transcript_id "ERVLB4_Xq21.33f"; locus "ERVLB4_Xq21.33f"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1859"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "-71"; repStart "2"; ### HERVH_Xq21.33b ### chrX rmsk gene 96624025 96630448 . + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1258"; model_cov "5718"; model_pct "74.1"; chrX rmsk exon 96624025 96624427 2773 + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1258"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 96624446 96629500 30845 + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1258"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "39"; chrX rmsk exon 96629502 96629717 1346 + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1258"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 96629718 96630091 2156 + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1258"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 96630093 96630448 2311 + . gene_id "HERVH_Xq21.33b"; transcript_id "HERVH_Xq21.33b"; locus "HERVH_Xq21.33b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1258"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### HERVFC2_Xq21.33 ### chrX rmsk gene 97841482 97849424 . + . gene_id "HERVFC2_Xq21.33"; transcript_id "HERVFC2_Xq21.33"; locus "HERVFC2_Xq21.33"; category "prototype"; intModel "HERV-Fc2-int"; locid "HERV-Fc2-int_0002"; model_cov "7249"; model_pct "100.0"; chrX rmsk exon 97841482 97841857 2977 + . gene_id "HERVFC2_Xq21.33"; transcript_id "HERVFC2_Xq21.33"; locus "HERVFC2_Xq21.33"; repName "HERV-Fc2_LTR"; geneRegion "ltr"; locid "HERV-Fc2-int_0002"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 97841858 97849054 58570 + . gene_id "HERVFC2_Xq21.33"; transcript_id "HERVFC2_Xq21.33"; locus "HERVFC2_Xq21.33"; repName "HERV-Fc2-int"; geneRegion "internal"; locid "HERV-Fc2-int_0002"; repClass "LTR"; repEnd "7250"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 97849055 97849424 2849 + . gene_id "HERVFC2_Xq21.33"; transcript_id "HERVFC2_Xq21.33"; locus "HERVFC2_Xq21.33"; repName "HERV-Fc2_LTR"; geneRegion "ltr"; locid "HERV-Fc2-int_0002"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xq21.33c ### chrX rmsk gene 98287858 98289247 . + . gene_id "HERVH_Xq21.33c"; transcript_id "HERVH_Xq21.33c"; locus "HERVH_Xq21.33c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1259"; model_cov "961"; model_pct "12.5"; chrX rmsk exon 98287858 98288195 2026 + . gene_id "HERVH_Xq21.33c"; transcript_id "HERVH_Xq21.33c"; locus "HERVH_Xq21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1259"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4798"; chrX rmsk exon 98288197 98288410 1297 + . gene_id "HERVH_Xq21.33c"; transcript_id "HERVH_Xq21.33c"; locus "HERVH_Xq21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1259"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 98288409 98288787 2484 + . gene_id "HERVH_Xq21.33c"; transcript_id "HERVH_Xq21.33c"; locus "HERVH_Xq21.33c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1259"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 98288788 98289247 3569 + . gene_id "HERVH_Xq21.33c"; transcript_id "HERVH_Xq21.33c"; locus "HERVH_Xq21.33c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1259"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_Xq21.33 ### chrX rmsk gene 98374832 98380913 . - . gene_id "MER61_Xq21.33"; transcript_id "MER61_Xq21.33"; locus "MER61_Xq21.33"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0409"; model_cov "4849"; model_pct "92.9"; chrX rmsk exon 98374832 98375241 2313 - . gene_id "MER61_Xq21.33"; transcript_id "MER61_Xq21.33"; locus "MER61_Xq21.33"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0409"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chrX rmsk exon 98375246 98375274 2079 - . gene_id "MER61_Xq21.33"; transcript_id "MER61_Xq21.33"; locus "MER61_Xq21.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0409"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "5185"; repStart "-4"; chrX rmsk exon 98375586 98380207 26918 - . gene_id "MER61_Xq21.33"; transcript_id "MER61_Xq21.33"; locus "MER61_Xq21.33"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0409"; repClass "LTR"; repEnd "5184"; repFamily "ERV1"; repLeft "363"; repStart "-33"; chrX rmsk exon 98380507 98380913 2618 - . gene_id "MER61_Xq21.33"; transcript_id "MER61_Xq21.33"; locus "MER61_Xq21.33"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0409"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; ### ERV316A3_Xq21.33a ### chrX rmsk gene 98398194 98402055 . - . gene_id "ERV316A3_Xq21.33a"; transcript_id "ERV316A3_Xq21.33a"; locus "ERV316A3_Xq21.33a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2801"; model_cov "1975"; model_pct "37.8"; chrX rmsk exon 98398194 98398381 461 - . gene_id "ERV316A3_Xq21.33a"; transcript_id "ERV316A3_Xq21.33a"; locus "ERV316A3_Xq21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2801"; repClass "LTR"; repEnd "5167"; repFamily "ERVL"; repLeft "4965"; repStart "-59"; chrX rmsk exon 98399160 98399193 1176 - . gene_id "ERV316A3_Xq21.33a"; transcript_id "ERV316A3_Xq21.33a"; locus "ERV316A3_Xq21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2801"; repClass "LTR"; repEnd "4960"; repFamily "ERVL"; repLeft "4932"; repStart "-266"; chrX rmsk exon 98399591 98399906 1176 - . gene_id "ERV316A3_Xq21.33a"; transcript_id "ERV316A3_Xq21.33a"; locus "ERV316A3_Xq21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2801"; repClass "LTR"; repEnd "4931"; repFamily "ERVL"; repLeft "4612"; repStart "-295"; chrX rmsk exon 98400639 98402055 3395 - . gene_id "ERV316A3_Xq21.33a"; transcript_id "ERV316A3_Xq21.33a"; locus "ERV316A3_Xq21.33a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2801"; repClass "LTR"; repEnd "4603"; repFamily "ERVL"; repLeft "3177"; repStart "-623"; ### ERVLE_Xq21.33 ### chrX rmsk gene 98405243 98408324 . + . gene_id "ERVLE_Xq21.33"; transcript_id "ERVLE_Xq21.33"; locus "ERVLE_Xq21.33"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3691"; model_cov "2016"; model_pct "35.6"; chrX rmsk exon 98405243 98406368 3540 + . gene_id "ERVLE_Xq21.33"; transcript_id "ERVLE_Xq21.33"; locus "ERVLE_Xq21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3691"; repClass "LTR"; repEnd "4185"; repFamily "ERVL"; repLeft "-1482"; repStart "3020"; chrX rmsk exon 98406816 98407414 1377 + . gene_id "ERVLE_Xq21.33"; transcript_id "ERVLE_Xq21.33"; locus "ERVLE_Xq21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3691"; repClass "LTR"; repEnd "4944"; repFamily "ERVL"; repLeft "-723"; repStart "4357"; chrX rmsk exon 98408073 98408324 708 + . gene_id "ERVLE_Xq21.33"; transcript_id "ERVLE_Xq21.33"; locus "ERVLE_Xq21.33"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3691"; repClass "LTR"; repEnd "5357"; repFamily "ERVL"; repLeft "-310"; repStart "5093"; ### HERVH_Xq21.33d ### chrX rmsk gene 98524246 98530070 . - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1260"; model_cov "4916"; model_pct "63.7"; chrX rmsk exon 98524246 98524697 3402 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 98524698 98525077 2557 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 98525076 98525293 1409 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 98525295 98525956 4405 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 98525959 98526463 3399 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 98526454 98526603 1023 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 98526583 98529617 20164 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 98529620 98530070 3419 - . gene_id "HERVH_Xq21.33d"; transcript_id "HERVH_Xq21.33d"; locus "HERVH_Xq21.33d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1260"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVFRD_Xq21.33c ### chrX rmsk gene 98575216 98577970 . - . gene_id "HERVFRD_Xq21.33c"; transcript_id "HERVFRD_Xq21.33c"; locus "HERVFRD_Xq21.33c"; category "internal"; intModel "MER50-int"; locid "MER50-int_0214"; model_cov "2917"; model_pct "40.5"; chrX rmsk exon 98575216 98575300 298 - . gene_id "HERVFRD_Xq21.33c"; transcript_id "HERVFRD_Xq21.33c"; locus "HERVFRD_Xq21.33c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0214"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "7112"; repStart "-9"; chrX rmsk exon 98576271 98576554 252 - . gene_id "HERVFRD_Xq21.33c"; transcript_id "HERVFRD_Xq21.33c"; locus "HERVFRD_Xq21.33c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0214"; repClass "LTR"; repEnd "6727"; repFamily "ERV1"; repLeft "6431"; repStart "-478"; chrX rmsk exon 98576648 98577970 2450 - . gene_id "HERVFRD_Xq21.33c"; transcript_id "HERVFRD_Xq21.33c"; locus "HERVFRD_Xq21.33c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0214"; repClass "LTR"; repEnd "6362"; repFamily "ERV1"; repLeft "3825"; repStart "-843"; ### ERV316A3_Xq21.33b ### chrX rmsk gene 98638198 98638905 . + . gene_id "ERV316A3_Xq21.33b"; transcript_id "ERV316A3_Xq21.33b"; locus "ERV316A3_Xq21.33b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2802"; model_cov "718"; model_pct "13.7"; chrX rmsk exon 98638198 98638905 1876 + . gene_id "ERV316A3_Xq21.33b"; transcript_id "ERV316A3_Xq21.33b"; locus "ERV316A3_Xq21.33b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2802"; repClass "LTR"; repEnd "4148"; repFamily "ERVL"; repLeft "-1078"; repStart "3430"; ### HERVL_Xq21.33g ### chrX rmsk gene 98655061 98661588 . + . gene_id "HERVL_Xq21.33g"; transcript_id "HERVL_Xq21.33g"; locus "HERVL_Xq21.33g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1353"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 98655061 98655521 3319 + . gene_id "HERVL_Xq21.33g"; transcript_id "HERVL_Xq21.33g"; locus "HERVL_Xq21.33g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1353"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 98655522 98661143 43412 + . gene_id "HERVL_Xq21.33g"; transcript_id "HERVL_Xq21.33g"; locus "HERVL_Xq21.33g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1353"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 98661144 98661588 3437 + . gene_id "HERVL_Xq21.33g"; transcript_id "HERVL_Xq21.33g"; locus "HERVL_Xq21.33g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1353"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_Xq21.33h ### chrX rmsk gene 98849425 98855201 . - . gene_id "HERVL_Xq21.33h"; transcript_id "HERVL_Xq21.33h"; locus "HERVL_Xq21.33h"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1354"; model_cov "4964"; model_pct "87.8"; chrX rmsk exon 98849425 98849834 2643 - . gene_id "HERVL_Xq21.33h"; transcript_id "HERVL_Xq21.33h"; locus "HERVL_Xq21.33h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1354"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-110"; repStart "-52"; chrX rmsk exon 98849835 98854397 35473 - . gene_id "HERVL_Xq21.33h"; transcript_id "HERVL_Xq21.33h"; locus "HERVL_Xq21.33h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1354"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1079"; repStart "0"; chrX rmsk exon 98854382 98854771 3039 - . gene_id "HERVL_Xq21.33h"; transcript_id "HERVL_Xq21.33h"; locus "HERVL_Xq21.33h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1354"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "1"; repStart "-5264"; chrX rmsk exon 98854772 98855201 2697 - . gene_id "HERVL_Xq21.33h"; transcript_id "HERVL_Xq21.33h"; locus "HERVL_Xq21.33h"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1354"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVFRD_Xq21.33d ### chrX rmsk gene 98855509 98858688 . + . gene_id "HERVFRD_Xq21.33d"; transcript_id "HERVFRD_Xq21.33d"; locus "HERVFRD_Xq21.33d"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0215"; model_cov "2326"; model_pct "32.3"; chrX rmsk exon 98855509 98856221 3978 + . gene_id "HERVFRD_Xq21.33d"; transcript_id "HERVFRD_Xq21.33d"; locus "HERVFRD_Xq21.33d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0215"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; chrX rmsk exon 98856265 98857983 6202 + . gene_id "HERVFRD_Xq21.33d"; transcript_id "HERVFRD_Xq21.33d"; locus "HERVFRD_Xq21.33d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0215"; repClass "LTR"; repEnd "1850"; repFamily "ERV1"; repLeft "-5355"; repStart "1"; chrX rmsk exon 98857980 98858688 2932 + . gene_id "HERVFRD_Xq21.33d"; transcript_id "HERVFRD_Xq21.33d"; locus "HERVFRD_Xq21.33d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0215"; repClass "LTR"; repEnd "3806"; repFamily "ERV1"; repLeft "-3399"; repStart "3329"; ### MER41_Xq21.33b ### chrX rmsk gene 98860384 98864928 . + . gene_id "MER41_Xq21.33b"; transcript_id "MER41_Xq21.33b"; locus "MER41_Xq21.33b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0603"; model_cov "5177"; model_pct "87.1"; chrX rmsk exon 98860384 98860662 12922 + . gene_id "MER41_Xq21.33b"; transcript_id "MER41_Xq21.33b"; locus "MER41_Xq21.33b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0603"; repClass "LTR"; repEnd "479"; repFamily "ERV1"; repLeft "-5467"; repStart "125"; chrX rmsk exon 98860758 98864259 12922 + . gene_id "MER41_Xq21.33b"; transcript_id "MER41_Xq21.33b"; locus "MER41_Xq21.33b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0603"; repClass "LTR"; repEnd "4946"; repFamily "ERV1"; repLeft "-1000"; repStart "480"; chrX rmsk exon 98864568 98864928 2594 + . gene_id "MER41_Xq21.33b"; transcript_id "MER41_Xq21.33b"; locus "MER41_Xq21.33b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0603"; repClass "LTR"; repEnd "5938"; repFamily "ERV1"; repLeft "-8"; repStart "5581"; ### HERVL40_Xq21.33 ### chrX rmsk gene 99096841 99103259 . - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0479"; model_cov "2786"; model_pct "50.4"; chrX rmsk exon 99096841 99097005 744 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "5363"; repStart "0"; chrX rmsk exon 99098021 99098172 264 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "5177"; repFamily "ERVL"; repLeft "5031"; repStart "-353"; chrX rmsk exon 99098970 99100534 5887 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "2699"; repStart "-1237"; chrX rmsk exon 99101313 99101445 583 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "2654"; repFamily "ERVL"; repLeft "2522"; repStart "-2876"; chrX rmsk exon 99101445 99101797 1655 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "1611"; repFamily "ERVL"; repLeft "1254"; repStart "-3919"; chrX rmsk exon 99102154 99102449 1655 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "1253"; repFamily "ERVL"; repLeft "929"; repStart "-4277"; chrX rmsk exon 99102684 99102746 356 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "69"; repFamily "ERVL"; repLeft "3"; repStart "-5461"; chrX rmsk exon 99102751 99103259 1876 - . gene_id "HERVL40_Xq21.33"; transcript_id "HERVL40_Xq21.33"; locus "HERVL40_Xq21.33"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0479"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_Xq22.1a ### chrX rmsk gene 99124852 99130756 . + . gene_id "ERVLB4_Xq22.1a"; transcript_id "ERVLB4_Xq22.1a"; locus "ERVLB4_Xq22.1a"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1860"; model_cov "5152"; model_pct "90.2"; chrX rmsk exon 99124852 99124995 819 + . gene_id "ERVLB4_Xq22.1a"; transcript_id "ERVLB4_Xq22.1a"; locus "ERVLB4_Xq22.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1860"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-75"; repStart "302"; chrX rmsk exon 99125115 99126100 3918 + . gene_id "ERVLB4_Xq22.1a"; transcript_id "ERVLB4_Xq22.1a"; locus "ERVLB4_Xq22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1860"; repClass "LTR"; repEnd "898"; repFamily "ERVL"; repLeft "-4816"; repStart "-42"; chrX rmsk exon 99126090 99130260 23010 + . gene_id "ERVLB4_Xq22.1a"; transcript_id "ERVLB4_Xq22.1a"; locus "ERVLB4_Xq22.1a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1860"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "1502"; chrX rmsk exon 99130261 99130756 2404 + . gene_id "ERVLB4_Xq22.1a"; transcript_id "ERVLB4_Xq22.1a"; locus "ERVLB4_Xq22.1a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1860"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_Xq22.1a ### chrX rmsk gene 99158722 99165186 . - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1261"; model_cov "5613"; model_pct "72.8"; chrX rmsk exon 99158722 99159121 2731 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 99159122 99159501 2374 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 99159500 99159715 1376 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 99159717 99161768 13731 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3140"; repStart "-2564"; chrX rmsk exon 99161748 99164784 19700 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 99164787 99165186 2768 - . gene_id "HERVH_Xq22.1a"; transcript_id "HERVH_Xq22.1a"; locus "HERVH_Xq22.1a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1261"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_Xq22.1a ### chrX rmsk gene 99321691 99329930 . + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0904"; model_cov "5340"; model_pct "80.9"; chrX rmsk exon 99321691 99322159 3012 + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0904"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 99322162 99322581 2491 + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0904"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-6162"; repStart "1"; chrX rmsk exon 99324568 99326257 6962 + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0904"; repClass "LTR"; repEnd "3221"; repFamily "ERV1"; repLeft "-3377"; repStart "1856"; chrX rmsk exon 99326505 99327390 3863 + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0904"; repClass "LTR"; repEnd "3677"; repFamily "ERV1"; repLeft "-2921"; repStart "2737"; chrX rmsk exon 99327394 99329930 15041 + . gene_id "MER4_Xq22.1a"; transcript_id "MER4_Xq22.1a"; locus "MER4_Xq22.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0904"; repClass "LTR"; repEnd "6437"; repFamily "ERV1"; repLeft "-161"; repStart "3837"; ### ERVLB4_Xq22.1b ### chrX rmsk gene 99419396 99420238 . - . gene_id "ERVLB4_Xq22.1b"; transcript_id "ERVLB4_Xq22.1b"; locus "ERVLB4_Xq22.1b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1861"; model_cov "805"; model_pct "14.1"; chrX rmsk exon 99419396 99419460 312 - . gene_id "ERVLB4_Xq22.1b"; transcript_id "ERVLB4_Xq22.1b"; locus "ERVLB4_Xq22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1861"; repClass "LTR"; repEnd "2168"; repFamily "ERVL"; repLeft "2102"; repStart "-3546"; chrX rmsk exon 99419520 99420238 4017 - . gene_id "ERVLB4_Xq22.1b"; transcript_id "ERVLB4_Xq22.1b"; locus "ERVLB4_Xq22.1b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1861"; repClass "LTR"; repEnd "2039"; repFamily "ERVL"; repLeft "1300"; repStart "-3675"; ### ERVLB4_Xq22.1c ### chrX rmsk gene 99435183 99436633 . - . gene_id "ERVLB4_Xq22.1c"; transcript_id "ERVLB4_Xq22.1c"; locus "ERVLB4_Xq22.1c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1862"; model_cov "1533"; model_pct "26.8"; chrX rmsk exon 99435183 99436633 4246 - . gene_id "ERVLB4_Xq22.1c"; transcript_id "ERVLB4_Xq22.1c"; locus "ERVLB4_Xq22.1c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1862"; repClass "LTR"; repEnd "4838"; repFamily "ERVL"; repLeft "3305"; repStart "-876"; ### MER4_Xq22.1b ### chrX rmsk gene 99570612 99573342 . - . gene_id "MER4_Xq22.1b"; transcript_id "MER4_Xq22.1b"; locus "MER4_Xq22.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0905"; model_cov "2871"; model_pct "43.5"; chrX rmsk exon 99570612 99572515 9696 - . gene_id "MER4_Xq22.1b"; transcript_id "MER4_Xq22.1b"; locus "MER4_Xq22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0905"; repClass "LTR"; repEnd "5769"; repFamily "ERV1"; repLeft "3817"; repStart "-829"; chrX rmsk exon 99572545 99573342 3031 - . gene_id "MER4_Xq22.1b"; transcript_id "MER4_Xq22.1b"; locus "MER4_Xq22.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0905"; repClass "LTR"; repEnd "3656"; repFamily "ERV1"; repLeft "2737"; repStart "-2942"; ### MER4_Xq22.1c ### chrX rmsk gene 99573598 99574928 . - . gene_id "MER4_Xq22.1c"; transcript_id "MER4_Xq22.1c"; locus "MER4_Xq22.1c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0906"; model_cov "1456"; model_pct "22.1"; chrX rmsk exon 99573598 99574211 2315 - . gene_id "MER4_Xq22.1c"; transcript_id "MER4_Xq22.1c"; locus "MER4_Xq22.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0906"; repClass "LTR"; repEnd "6464"; repFamily "ERV1"; repLeft "5544"; repStart "-134"; chrX rmsk exon 99574394 99574928 3156 - . gene_id "MER4_Xq22.1c"; transcript_id "MER4_Xq22.1c"; locus "MER4_Xq22.1c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0906"; repClass "LTR"; repEnd "575"; repFamily "ERV1"; repLeft "39"; repStart "-6023"; ### ERV316A3_Xq22.1a ### chrX rmsk gene 99997504 99999594 . - . gene_id "ERV316A3_Xq22.1a"; transcript_id "ERV316A3_Xq22.1a"; locus "ERV316A3_Xq22.1a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2803"; model_cov "1635"; model_pct "31.3"; chrX rmsk exon 99997504 99997721 614 - . gene_id "ERV316A3_Xq22.1a"; transcript_id "ERV316A3_Xq22.1a"; locus "ERV316A3_Xq22.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2803"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "247"; repStart "-3"; chrX rmsk exon 99997724 99999365 6008 - . gene_id "ERV316A3_Xq22.1a"; transcript_id "ERV316A3_Xq22.1a"; locus "ERV316A3_Xq22.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2803"; repClass "LTR"; repEnd "1637"; repFamily "ERVL"; repLeft "2"; repStart "-3589"; chrX rmsk exon 99999366 99999594 946 - . gene_id "ERV316A3_Xq22.1a"; transcript_id "ERV316A3_Xq22.1a"; locus "ERV316A3_Xq22.1a"; repName "LTR16B"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2803"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "220"; repStart "-7"; ### HERVP71A_Xq22.1a ### chrX rmsk gene 100567828 100570508 . - . gene_id "HERVP71A_Xq22.1a"; transcript_id "HERVP71A_Xq22.1a"; locus "HERVP71A_Xq22.1a"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0077"; model_cov "2329"; model_pct "30.7"; chrX rmsk exon 100567828 100568275 3330 - . gene_id "HERVP71A_Xq22.1a"; transcript_id "HERVP71A_Xq22.1a"; locus "HERVP71A_Xq22.1a"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0077"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "12"; repStart "0"; chrX rmsk exon 100568276 100570508 48173 - . gene_id "HERVP71A_Xq22.1a"; transcript_id "HERVP71A_Xq22.1a"; locus "HERVP71A_Xq22.1a"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0077"; repClass "LTR"; repEnd "7587"; repFamily "ERV1"; repLeft "5258"; repStart "-3"; ### HERVP71A_Xq22.1b ### chrX rmsk gene 100570590 100575762 . - . gene_id "HERVP71A_Xq22.1b"; transcript_id "HERVP71A_Xq22.1b"; locus "HERVP71A_Xq22.1b"; category "internal"; intModel "HERVP71A-int"; locid "HERVP71A-int_0078"; model_cov "4360"; model_pct "57.4"; chrX rmsk exon 100570590 100570652 48173 - . gene_id "HERVP71A_Xq22.1b"; transcript_id "HERVP71A_Xq22.1b"; locus "HERVP71A_Xq22.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0078"; repClass "LTR"; repEnd "7587"; repFamily "ERV1"; repLeft "7521"; repStart "-3"; chrX rmsk exon 100570966 100572593 48173 - . gene_id "HERVP71A_Xq22.1b"; transcript_id "HERVP71A_Xq22.1b"; locus "HERVP71A_Xq22.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0078"; repClass "LTR"; repEnd "5190"; repFamily "ERV1"; repLeft "3583"; repStart "-2400"; chrX rmsk exon 100572853 100575132 48173 - . gene_id "HERVP71A_Xq22.1b"; transcript_id "HERVP71A_Xq22.1b"; locus "HERVP71A_Xq22.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0078"; repClass "LTR"; repEnd "3582"; repFamily "ERV1"; repLeft "1234"; repStart "-4008"; chrX rmsk exon 100575443 100575762 48173 - . gene_id "HERVP71A_Xq22.1b"; transcript_id "HERVP71A_Xq22.1b"; locus "HERVP71A_Xq22.1b"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0078"; repClass "LTR"; repEnd "1233"; repFamily "ERV1"; repLeft "894"; repStart "-6357"; ### HERVP71A_Xq22.1c ### chrX rmsk gene 100575947 100577246 . - . gene_id "HERVP71A_Xq22.1c"; transcript_id "HERVP71A_Xq22.1c"; locus "HERVP71A_Xq22.1c"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0079"; model_cov "892"; model_pct "11.8"; chrX rmsk exon 100575947 100576785 48173 - . gene_id "HERVP71A_Xq22.1c"; transcript_id "HERVP71A_Xq22.1c"; locus "HERVP71A_Xq22.1c"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0079"; repClass "LTR"; repEnd "1233"; repFamily "ERV1"; repLeft "341"; repStart "-6357"; chrX rmsk exon 100576786 100577246 3623 - . gene_id "HERVP71A_Xq22.1c"; transcript_id "HERVP71A_Xq22.1c"; locus "HERVP71A_Xq22.1c"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0079"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xq22.1d ### chrX rmsk gene 100754668 100756942 . - . gene_id "ERVLB4_Xq22.1d"; transcript_id "ERVLB4_Xq22.1d"; locus "ERVLB4_Xq22.1d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1863"; model_cov "2211"; model_pct "38.7"; chrX rmsk exon 100754668 100755472 5305 - . gene_id "ERVLB4_Xq22.1d"; transcript_id "ERVLB4_Xq22.1d"; locus "ERVLB4_Xq22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1863"; repClass "LTR"; repEnd "5398"; repFamily "ERVL"; repLeft "4593"; repStart "-316"; chrX rmsk exon 100755555 100755905 2246 - . gene_id "ERVLB4_Xq22.1d"; transcript_id "ERVLB4_Xq22.1d"; locus "ERVLB4_Xq22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1863"; repClass "LTR"; repEnd "3957"; repFamily "ERVL"; repLeft "3603"; repStart "-1757"; chrX rmsk exon 100755902 100756942 7299 - . gene_id "ERVLB4_Xq22.1d"; transcript_id "ERVLB4_Xq22.1d"; locus "ERVLB4_Xq22.1d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1863"; repClass "LTR"; repEnd "2684"; repFamily "ERVL"; repLeft "1632"; repStart "-3030"; ### ERVLB4_Xq22.1e ### chrX rmsk gene 100761449 100763731 . - . gene_id "ERVLB4_Xq22.1e"; transcript_id "ERVLB4_Xq22.1e"; locus "ERVLB4_Xq22.1e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1864"; model_cov "1653"; model_pct "28.9"; chrX rmsk exon 100761449 100763106 9708 - . gene_id "ERVLB4_Xq22.1e"; transcript_id "ERVLB4_Xq22.1e"; locus "ERVLB4_Xq22.1e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1864"; repClass "LTR"; repEnd "1654"; repFamily "ERVL"; repLeft "1"; repStart "-4060"; chrX rmsk exon 100763107 100763153 3607 - . gene_id "ERVLB4_Xq22.1e"; transcript_id "ERVLB4_Xq22.1e"; locus "ERVLB4_Xq22.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1864"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "509"; repStart "0"; chrX rmsk exon 100763212 100763731 3607 - . gene_id "ERVLB4_Xq22.1e"; transcript_id "ERVLB4_Xq22.1e"; locus "ERVLB4_Xq22.1e"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1864"; repClass "LTR"; repEnd "508"; repFamily "ERVL"; repLeft "2"; repStart "-46"; ### HERVH_Xq22.1b ### chrX rmsk gene 100786618 100791864 . - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1262"; model_cov "4601"; model_pct "59.7"; chrX rmsk exon 100786618 100786770 1029 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "318"; repStart "-2"; chrX rmsk exon 100786787 100787340 3669 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "7712"; repFamily "ERV1"; repLeft "7157"; repStart "-1"; chrX rmsk exon 100787334 100787754 2317 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chrX rmsk exon 100787746 100789329 10034 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3609"; repStart "-2564"; chrX rmsk exon 100789323 100790983 10240 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "2423"; repFamily "ERV1"; repLeft "801"; repStart "-5290"; chrX rmsk exon 100791050 100791501 2136 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chrX rmsk exon 100791502 100791864 2179 - . gene_id "HERVH_Xq22.1b"; transcript_id "HERVH_Xq22.1b"; locus "HERVH_Xq22.1b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1262"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA4_Xq22.1 ### chrX rmsk gene 100791865 100799758 . + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0252"; model_cov "6977"; model_pct "84.4"; chrX rmsk exon 100791865 100795500 54512 + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0252"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "-3256"; repStart "1290"; chrX rmsk exon 100795835 100796233 54512 + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0252"; repClass "LTR"; repEnd "5394"; repFamily "ERV1"; repLeft "-2876"; repStart "5015"; chrX rmsk exon 100796533 100796845 54512 + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0252"; repClass "LTR"; repEnd "5715"; repFamily "ERV1"; repLeft "-2555"; repStart "5395"; chrX rmsk exon 100796916 100799405 54512 + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0252"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "0"; repStart "5716"; chrX rmsk exon 100799408 100799758 2699 + . gene_id "PRIMA4_Xq22.1"; transcript_id "PRIMA4_Xq22.1"; locus "PRIMA4_Xq22.1"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0252"; repClass "LTR"; repEnd "354"; repFamily "ERV1"; repLeft "-240"; repStart "3"; ### HUERSP1_Xq22.1 ### chrX rmsk gene 101070965 101076508 . + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0228"; model_cov "3341"; model_pct "53.3"; chrX rmsk exon 101070965 101071015 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "2959"; repFamily "ERV1"; repLeft "-3304"; repStart "2913"; chrX rmsk exon 101071065 101071091 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "2986"; repFamily "ERV1"; repLeft "-3277"; repStart "2960"; chrX rmsk exon 101071431 101071983 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "3572"; repFamily "ERV1"; repLeft "-2691"; repStart "2987"; chrX rmsk exon 101072288 101072875 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "4133"; repFamily "ERV1"; repLeft "-2130"; repStart "3573"; chrX rmsk exon 101073180 101073297 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "4243"; repFamily "ERV1"; repLeft "-2020"; repStart "4134"; chrX rmsk exon 101073599 101073838 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "4455"; repFamily "ERV1"; repLeft "-1808"; repStart "4244"; chrX rmsk exon 101074148 101075972 24905 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "6260"; repFamily "ERV1"; repLeft "-3"; repStart "4456"; chrX rmsk exon 101075973 101076508 5483 + . gene_id "HUERSP1_Xq22.1"; transcript_id "HUERSP1_Xq22.1"; locus "HUERSP1_Xq22.1"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0228"; repClass "LTR"; repEnd "535"; repFamily "ERV1"; repLeft "-156"; repStart "1"; ### HML1_Xq22.1 ### chrX rmsk gene 101183246 101189871 . - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0126"; model_cov "5861"; model_pct "96.1"; chrX rmsk exon 101183246 101183588 3025 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 101183592 101183710 677 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5973"; repStart "0"; chrX rmsk exon 101183784 101183862 677 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "5900"; repFamily "ERVK"; repLeft "5821"; repStart "-196"; chrX rmsk exon 101183919 101184005 562 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "5764"; repFamily "ERVK"; repLeft "5656"; repStart "-332"; chrX rmsk exon 101184005 101189531 46543 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "1"; repStart "-544"; chrX rmsk exon 101189532 101189871 2910 - . gene_id "HML1_Xq22.1"; transcript_id "HML1_Xq22.1"; locus "HML1_Xq22.1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0126"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_Xq22.1f ### chrX rmsk gene 101512701 101515967 . - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1865"; model_cov "2127"; model_pct "37.2"; chrX rmsk exon 101512701 101512762 264 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "411"; repStart "0"; chrX rmsk exon 101512911 101513296 1989 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-61"; chrX rmsk exon 101513303 101513869 2897 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "5697"; repFamily "ERVL"; repLeft "5094"; repStart "-17"; chrX rmsk exon 101513931 101514815 4844 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "5114"; repFamily "ERVL"; repLeft "4217"; repStart "-600"; chrX rmsk exon 101514819 101515285 1077 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "721"; repFamily "ERVL"; repLeft "220"; repStart "-4993"; chrX rmsk exon 101515842 101515967 739 - . gene_id "ERVLB4_Xq22.1f"; transcript_id "ERVLB4_Xq22.1f"; locus "ERVLB4_Xq22.1f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1865"; repClass "LTR"; repEnd "189"; repFamily "ERVL"; repLeft "63"; repStart "-5525"; ### ERVLE_Xq22.1a ### chrX rmsk gene 101531661 101532640 . + . gene_id "ERVLE_Xq22.1a"; transcript_id "ERVLE_Xq22.1a"; locus "ERVLE_Xq22.1a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3695"; model_cov "1028"; model_pct "18.1"; chrX rmsk exon 101531661 101532640 2675 + . gene_id "ERVLE_Xq22.1a"; transcript_id "ERVLE_Xq22.1a"; locus "ERVLE_Xq22.1a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3695"; repClass "LTR"; repEnd "5103"; repFamily "ERVL"; repLeft "-564"; repStart "4075"; ### PABLB_Xq22.1 ### chrX rmsk gene 101860161 101863376 . + . gene_id "PABLB_Xq22.1"; transcript_id "PABLB_Xq22.1"; locus "PABLB_Xq22.1"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0108"; model_cov "2979"; model_pct "41.8"; chrX rmsk exon 101860161 101860974 621 + . gene_id "PABLB_Xq22.1"; transcript_id "PABLB_Xq22.1"; locus "PABLB_Xq22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0108"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "-6488"; repStart "-691"; chrX rmsk exon 101861270 101861382 262 + . gene_id "PABLB_Xq22.1"; transcript_id "PABLB_Xq22.1"; locus "PABLB_Xq22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0108"; repClass "LTR"; repEnd "2105"; repFamily "ERV1"; repLeft "-5017"; repStart "1994"; chrX rmsk exon 101861844 101863376 1963 + . gene_id "PABLB_Xq22.1"; transcript_id "PABLB_Xq22.1"; locus "PABLB_Xq22.1"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0108"; repClass "LTR"; repEnd "4308"; repFamily "ERV1"; repLeft "-2814"; repStart "2765"; ### ERV316A3_Xq22.1b ### chrX rmsk gene 101937954 101939885 . + . gene_id "ERV316A3_Xq22.1b"; transcript_id "ERV316A3_Xq22.1b"; locus "ERV316A3_Xq22.1b"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2804"; model_cov "1733"; model_pct "33.2"; chrX rmsk exon 101937954 101938445 3320 + . gene_id "ERV316A3_Xq22.1b"; transcript_id "ERV316A3_Xq22.1b"; locus "ERV316A3_Xq22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2804"; repClass "LTR"; repEnd "1766"; repFamily "ERVL"; repLeft "-3460"; repStart "1266"; chrX rmsk exon 101938753 101939885 3320 + . gene_id "ERV316A3_Xq22.1b"; transcript_id "ERV316A3_Xq22.1b"; locus "ERV316A3_Xq22.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2804"; repClass "LTR"; repEnd "2918"; repFamily "ERVL"; repLeft "-2308"; repStart "1685"; ### ERV316A3_Xq22.1c ### chrX rmsk gene 101942522 101943263 . + . gene_id "ERV316A3_Xq22.1c"; transcript_id "ERV316A3_Xq22.1c"; locus "ERV316A3_Xq22.1c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2805"; model_cov "740"; model_pct "14.2"; chrX rmsk exon 101942522 101943263 2223 + . gene_id "ERV316A3_Xq22.1c"; transcript_id "ERV316A3_Xq22.1c"; locus "ERV316A3_Xq22.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2805"; repClass "LTR"; repEnd "3977"; repFamily "ERVL"; repLeft "-1249"; repStart "3237"; ### MER4_Xq22.1d ### chrX rmsk gene 102060351 102067080 . + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0908"; model_cov "5203"; model_pct "78.9"; chrX rmsk exon 102060351 102060798 2823 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0908"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 102060801 102062933 6490 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0908"; repClass "LTR"; repEnd "3203"; repFamily "ERV1"; repLeft "-3395"; repStart "1584"; chrX rmsk exon 102063192 102063949 3699 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0908"; repClass "LTR"; repEnd "3534"; repFamily "ERV1"; repLeft "-3064"; repStart "2737"; chrX rmsk exon 102063941 102063984 253 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0908"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "-2912"; repStart "3643"; chrX rmsk exon 102064014 102066627 13724 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0908"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3852"; chrX rmsk exon 102066636 102067080 2935 + . gene_id "MER4_Xq22.1d"; transcript_id "MER4_Xq22.1d"; locus "MER4_Xq22.1d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0908"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xq22.1g ### chrX rmsk gene 102093536 102094400 . - . gene_id "ERVLB4_Xq22.1g"; transcript_id "ERVLB4_Xq22.1g"; locus "ERVLB4_Xq22.1g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1866"; model_cov "871"; model_pct "15.2"; chrX rmsk exon 102093536 102094400 6646 - . gene_id "ERVLB4_Xq22.1g"; transcript_id "ERVLB4_Xq22.1g"; locus "ERVLB4_Xq22.1g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1866"; repClass "LTR"; repEnd "4905"; repFamily "ERVL"; repLeft "4034"; repStart "-809"; ### ERVLE_Xq22.1b ### chrX rmsk gene 102131723 102132335 . + . gene_id "ERVLE_Xq22.1b"; transcript_id "ERVLE_Xq22.1b"; locus "ERVLE_Xq22.1b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3697"; model_cov "579"; model_pct "10.2"; chrX rmsk exon 102131723 102132094 905 + . gene_id "ERVLE_Xq22.1b"; transcript_id "ERVLE_Xq22.1b"; locus "ERVLE_Xq22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3697"; repClass "LTR"; repEnd "1646"; repFamily "ERVL"; repLeft "-4021"; repStart "1269"; chrX rmsk exon 102132136 102132335 493 + . gene_id "ERVLE_Xq22.1b"; transcript_id "ERVLE_Xq22.1b"; locus "ERVLE_Xq22.1b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3697"; repClass "LTR"; repEnd "1927"; repFamily "ERVL"; repLeft "-3740"; repStart "1725"; ### HERVL_Xq22.1 ### chrX rmsk gene 102132421 102133108 . + . gene_id "HERVL_Xq22.1"; transcript_id "HERVL_Xq22.1"; locus "HERVL_Xq22.1"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1357"; model_cov "723"; model_pct "12.8"; chrX rmsk exon 102132421 102133108 1473 + . gene_id "HERVL_Xq22.1"; transcript_id "HERVL_Xq22.1"; locus "HERVL_Xq22.1"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1357"; repClass "LTR"; repEnd "4038"; repFamily "ERVL"; repLeft "-1616"; repStart "3315"; ### ERVLE_Xq22.1c ### chrX rmsk gene 102136815 102137664 . - . gene_id "ERVLE_Xq22.1c"; transcript_id "ERVLE_Xq22.1c"; locus "ERVLE_Xq22.1c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3698"; model_cov "868"; model_pct "15.3"; chrX rmsk exon 102136815 102137664 1988 - . gene_id "ERVLE_Xq22.1c"; transcript_id "ERVLE_Xq22.1c"; locus "ERVLE_Xq22.1c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3698"; repClass "LTR"; repEnd "3852"; repFamily "ERVL"; repLeft "2984"; repStart "-1815"; ### HML5_Xq22.1 ### chrX rmsk gene 102175186 102181644 . - . gene_id "HML5_Xq22.1"; transcript_id "HML5_Xq22.1"; locus "HML5_Xq22.1"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0140"; model_cov "6836"; model_pct "100.0"; chrX rmsk exon 102175186 102175662 2196 - . gene_id "HML5_Xq22.1"; transcript_id "HML5_Xq22.1"; locus "HML5_Xq22.1"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0140"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "3"; repStart "0"; chrX rmsk exon 102175665 102181185 37166 - . gene_id "HML5_Xq22.1"; transcript_id "HML5_Xq22.1"; locus "HML5_Xq22.1"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0140"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 102181186 102181644 2078 - . gene_id "HML5_Xq22.1"; transcript_id "HML5_Xq22.1"; locus "HML5_Xq22.1"; repName "LTR22C2"; geneRegion "ltr"; locid "HERVK22-int_0140"; repClass "LTR"; repEnd "496"; repFamily "ERVK"; repLeft "20"; repStart "0"; ### HUERSP3B_Xq22.1 ### chrX rmsk gene 102732151 102737494 . - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0147"; model_cov "3764"; model_pct "50.7"; chrX rmsk exon 102732151 102732466 2210 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "7409"; repFamily "ERV1"; repLeft "7095"; repStart "-9"; chrX rmsk exon 102732465 102733173 14625 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "6526"; repFamily "ERV1"; repLeft "5818"; repStart "-892"; chrX rmsk exon 102733477 102733787 14625 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "5817"; repFamily "ERV1"; repLeft "5538"; repStart "-1601"; chrX rmsk exon 102734238 102734336 14625 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "5537"; repFamily "ERV1"; repLeft "5432"; repStart "-1881"; chrX rmsk exon 102734644 102735403 14625 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "5431"; repFamily "ERV1"; repLeft "4688"; repStart "-1987"; chrX rmsk exon 102735707 102737494 14625 - . gene_id "HUERSP3B_Xq22.1"; transcript_id "HUERSP3B_Xq22.1"; locus "HUERSP3B_Xq22.1"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0147"; repClass "LTR"; repEnd "4687"; repFamily "ERV1"; repLeft "3072"; repStart "-2731"; ### HERVFRD_Xq22.1 ### chrX rmsk gene 102738078 102742763 . - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; category "unknown"; intModel "MER50-int"; locid "MER50-int_0217"; model_cov "2537"; model_pct "35.2"; chrX rmsk exon 102738078 102738528 1981 - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0217"; repClass "LTR"; repEnd "2047"; repFamily "ERV1"; repLeft "1185"; repStart "-5158"; chrX rmsk exon 102738526 102738756 2501 - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0217"; repClass "LTR"; repEnd "1612"; repFamily "ERV1"; repLeft "1379"; repStart "-5593"; chrX rmsk exon 102739194 102740271 5097 - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0217"; repClass "LTR"; repEnd "1378"; repFamily "ERV1"; repLeft "161"; repStart "-5827"; chrX rmsk exon 102741054 102741707 4179 - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0217"; repClass "LTR"; repEnd "668"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chrX rmsk exon 102742566 102742763 1298 - . gene_id "HERVFRD_Xq22.1"; transcript_id "HERVFRD_Xq22.1"; locus "HERVFRD_Xq22.1"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0217"; repClass "LTR"; repEnd "833"; repFamily "ERV1"; repLeft "608"; repStart "-6372"; ### MER4_Xq22.1e ### chrX rmsk gene 102788400 102791425 . - . gene_id "MER4_Xq22.1e"; transcript_id "MER4_Xq22.1e"; locus "MER4_Xq22.1e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0909"; model_cov "2623"; model_pct "39.8"; chrX rmsk exon 102788400 102788870 3345 - . gene_id "MER4_Xq22.1e"; transcript_id "MER4_Xq22.1e"; locus "MER4_Xq22.1e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0909"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 102788891 102791425 15542 - . gene_id "MER4_Xq22.1e"; transcript_id "MER4_Xq22.1e"; locus "MER4_Xq22.1e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0909"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "3973"; repStart "-2"; ### ERVLB4_Xq22.1h ### chrX rmsk gene 102821848 102822901 . + . gene_id "ERVLB4_Xq22.1h"; transcript_id "ERVLB4_Xq22.1h"; locus "ERVLB4_Xq22.1h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1868"; model_cov "1097"; model_pct "19.2"; chrX rmsk exon 102821848 102822901 6386 + . gene_id "ERVLB4_Xq22.1h"; transcript_id "ERVLB4_Xq22.1h"; locus "ERVLB4_Xq22.1h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1868"; repClass "LTR"; repEnd "3937"; repFamily "ERVL"; repLeft "-1777"; repStart "2840"; ### ERVLE_Xq22.1d ### chrX rmsk gene 102996654 102997391 . + . gene_id "ERVLE_Xq22.1d"; transcript_id "ERVLE_Xq22.1d"; locus "ERVLE_Xq22.1d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3699"; model_cov "794"; model_pct "14.0"; chrX rmsk exon 102996654 102997391 1023 + . gene_id "ERVLE_Xq22.1d"; transcript_id "ERVLE_Xq22.1d"; locus "ERVLE_Xq22.1d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3699"; repClass "LTR"; repEnd "4950"; repFamily "ERVL"; repLeft "-717"; repStart "4156"; ### MER4_Xq22.1f ### chrX rmsk gene 103011219 103012118 . - . gene_id "MER4_Xq22.1f"; transcript_id "MER4_Xq22.1f"; locus "MER4_Xq22.1f"; category "internal"; intModel "MER4-int"; locid "MER4-int_0911"; model_cov "1230"; model_pct "18.6"; chrX rmsk exon 103011219 103012118 2990 - . gene_id "MER4_Xq22.1f"; transcript_id "MER4_Xq22.1f"; locus "MER4_Xq22.1f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0911"; repClass "LTR"; repEnd "4103"; repFamily "ERV1"; repLeft "2873"; repStart "-2495"; ### LTR23_Xq22.1 ### chrX rmsk gene 103100152 103101195 . - . gene_id "LTR23_Xq22.1"; transcript_id "LTR23_Xq22.1"; locus "LTR23_Xq22.1"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0078"; model_cov "1081"; model_pct "21.1"; chrX rmsk exon 103100152 103100643 1245 - . gene_id "LTR23_Xq22.1"; transcript_id "LTR23_Xq22.1"; locus "LTR23_Xq22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0078"; repClass "LTR"; repEnd "1808"; repFamily "ERV1"; repLeft "865"; repStart "-3315"; chrX rmsk exon 103100762 103100813 372 - . gene_id "LTR23_Xq22.1"; transcript_id "LTR23_Xq22.1"; locus "LTR23_Xq22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0078"; repClass "LTR"; repEnd "990"; repFamily "ERV1"; repLeft "952"; repStart "-4133"; chrX rmsk exon 103101094 103101195 372 - . gene_id "LTR23_Xq22.1"; transcript_id "LTR23_Xq22.1"; locus "LTR23_Xq22.1"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0078"; repClass "LTR"; repEnd "951"; repFamily "ERV1"; repLeft "851"; repStart "-4172"; ### ERVLB4_Xq22.1i ### chrX rmsk gene 103149529 103150268 . + . gene_id "ERVLB4_Xq22.1i"; transcript_id "ERVLB4_Xq22.1i"; locus "ERVLB4_Xq22.1i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1869"; model_cov "741"; model_pct "13.0"; chrX rmsk exon 103149529 103150268 4415 + . gene_id "ERVLB4_Xq22.1i"; transcript_id "ERVLB4_Xq22.1i"; locus "ERVLB4_Xq22.1i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1869"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-1139"; repStart "3834"; ### HERVL74_Xq22.1a ### chrX rmsk gene 103281544 103282494 . - . gene_id "HERVL74_Xq22.1a"; transcript_id "HERVL74_Xq22.1a"; locus "HERVL74_Xq22.1a"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0143"; model_cov "599"; model_pct "10.5"; chrX rmsk exon 103281544 103281996 2436 - . gene_id "HERVL74_Xq22.1a"; transcript_id "HERVL74_Xq22.1a"; locus "HERVL74_Xq22.1a"; repName "MER74C"; geneRegion "ltr"; locid "HERVL74-int_0143"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 103282003 103282494 1005 - . gene_id "HERVL74_Xq22.1a"; transcript_id "HERVL74_Xq22.1a"; locus "HERVL74_Xq22.1a"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0143"; repClass "LTR"; repEnd "5670"; repFamily "ERVL"; repLeft "5071"; repStart "-15"; ### HERVL74_Xq22.1b ### chrX rmsk gene 103291320 103294936 . - . gene_id "HERVL74_Xq22.1b"; transcript_id "HERVL74_Xq22.1b"; locus "HERVL74_Xq22.1b"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0144"; model_cov "3327"; model_pct "58.5"; chrX rmsk exon 103291320 103294421 18713 - . gene_id "HERVL74_Xq22.1b"; transcript_id "HERVL74_Xq22.1b"; locus "HERVL74_Xq22.1b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0144"; repClass "LTR"; repEnd "4505"; repFamily "ERVL"; repLeft "1410"; repStart "-1180"; chrX rmsk exon 103294699 103294936 18713 - . gene_id "HERVL74_Xq22.1b"; transcript_id "HERVL74_Xq22.1b"; locus "HERVL74_Xq22.1b"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0144"; repClass "LTR"; repEnd "1409"; repFamily "ERVL"; repLeft "1177"; repStart "-4276"; ### HERVH_Xq22.2a ### chrX rmsk gene 103429055 103435438 . - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1263"; model_cov "5535"; model_pct "71.8"; chrX rmsk exon 103429055 103429453 2348 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-13"; repStart "-2"; chrX rmsk exon 103429454 103429830 2469 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 103429831 103430053 1370 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5590"; repStart "-1894"; chrX rmsk exon 103430045 103431286 6567 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3978"; repStart "-2564"; chrX rmsk exon 103431275 103435037 15201 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "3747"; repFamily "ERV1"; repLeft "1"; repStart "-3966"; chrX rmsk exon 103435040 103435438 2849 - . gene_id "HERVH_Xq22.2a"; transcript_id "HERVH_Xq22.2a"; locus "HERVH_Xq22.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1263"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xq22.2b ### chrX rmsk gene 103761159 103762899 . - . gene_id "HERVH_Xq22.2b"; transcript_id "HERVH_Xq22.2b"; locus "HERVH_Xq22.2b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1264"; model_cov "1452"; model_pct "18.8"; chrX rmsk exon 103761159 103761528 2338 - . gene_id "HERVH_Xq22.2b"; transcript_id "HERVH_Xq22.2b"; locus "HERVH_Xq22.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1264"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 103761529 103761918 2615 - . gene_id "HERVH_Xq22.2b"; transcript_id "HERVH_Xq22.2b"; locus "HERVH_Xq22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1264"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 103761919 103762145 1407 - . gene_id "HERVH_Xq22.2b"; transcript_id "HERVH_Xq22.2b"; locus "HERVH_Xq22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1264"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5594"; repStart "-1894"; chrX rmsk exon 103762143 103762899 5983 - . gene_id "HERVH_Xq22.2b"; transcript_id "HERVH_Xq22.2b"; locus "HERVH_Xq22.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1264"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4311"; repStart "-2564"; ### HERVH_Xq22.2c ### chrX rmsk gene 103763061 103767306 . - . gene_id "HERVH_Xq22.2c"; transcript_id "HERVH_Xq22.2c"; locus "HERVH_Xq22.2c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1265"; model_cov "4163"; model_pct "54.0"; chrX rmsk exon 103763061 103764114 5983 - . gene_id "HERVH_Xq22.2c"; transcript_id "HERVH_Xq22.2c"; locus "HERVH_Xq22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1265"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3979"; repStart "-2564"; chrX rmsk exon 103764099 103766929 13794 - . gene_id "HERVH_Xq22.2c"; transcript_id "HERVH_Xq22.2c"; locus "HERVH_Xq22.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1265"; repClass "LTR"; repEnd "2994"; repFamily "ERV1"; repLeft "1"; repStart "-4719"; chrX rmsk exon 103766932 103767306 2391 - . gene_id "HERVH_Xq22.2c"; transcript_id "HERVH_Xq22.2c"; locus "HERVH_Xq22.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1265"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL40_Xq22.2 ### chrX rmsk gene 103857699 103863417 . + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0480"; model_cov "4111"; model_pct "74.3"; chrX rmsk exon 103857699 103858055 944 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-49"; repStart "95"; chrX rmsk exon 103858082 103858513 19987 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "425"; repFamily "ERVL"; repLeft "-5105"; repStart "1"; chrX rmsk exon 103858976 103859249 19987 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "711"; repFamily "ERVL"; repLeft "-4819"; repStart "426"; chrX rmsk exon 103859290 103862300 19987 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "3860"; repFamily "ERVL"; repLeft "-1670"; repStart "712"; chrX rmsk exon 103862655 103862982 1494 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "5530"; repFamily "ERVL"; repLeft "0"; repStart "5276"; chrX rmsk exon 103862983 103863417 1370 + . gene_id "HERVL40_Xq22.2"; transcript_id "HERVL40_Xq22.2"; locus "HERVL40_Xq22.2"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0480"; repClass "LTR"; repEnd "431"; repFamily "ERVL"; repLeft "-88"; repStart "1"; ### LTR25_Xq22.2a ### chrX rmsk gene 103864676 103867698 . - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0151"; model_cov "1597"; model_pct "22.2"; chrX rmsk exon 103864676 103865210 3884 - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0151"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "258"; repStart "0"; chrX rmsk exon 103865246 103865494 3884 - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0151"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "2"; repStart "-587"; chrX rmsk exon 103865495 103865812 8159 - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0151"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "6877"; repStart "0"; chrX rmsk exon 103866110 103866563 8159 - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0151"; repClass "LTR"; repEnd "6876"; repFamily "ERV1"; repLeft "6433"; repStart "-312"; chrX rmsk exon 103866905 103867698 8159 - . gene_id "LTR25_Xq22.2a"; transcript_id "LTR25_Xq22.2a"; locus "LTR25_Xq22.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0151"; repClass "LTR"; repEnd "6432"; repFamily "ERV1"; repLeft "5589"; repStart "-756"; ### LTR25_Xq22.2b ### chrX rmsk gene 103873422 103879991 . - . gene_id "LTR25_Xq22.2b"; transcript_id "LTR25_Xq22.2b"; locus "LTR25_Xq22.2b"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0152"; model_cov "5590"; model_pct "77.8"; chrX rmsk exon 103873422 103874134 7395 - . gene_id "LTR25_Xq22.2b"; transcript_id "LTR25_Xq22.2b"; locus "LTR25_Xq22.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0152"; repClass "LTR"; repEnd "5592"; repFamily "ERV1"; repLeft "4874"; repStart "-1596"; chrX rmsk exon 103874417 103879207 26338 - . gene_id "LTR25_Xq22.2b"; transcript_id "LTR25_Xq22.2b"; locus "LTR25_Xq22.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0152"; repClass "LTR"; repEnd "4873"; repFamily "ERV1"; repLeft "1"; repStart "-2315"; chrX rmsk exon 103879208 103879991 4723 - . gene_id "LTR25_Xq22.2b"; transcript_id "LTR25_Xq22.2b"; locus "LTR25_Xq22.2b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0152"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xq22.3a ### chrX rmsk gene 104532865 104534478 . - . gene_id "ERVLE_Xq22.3a"; transcript_id "ERVLE_Xq22.3a"; locus "ERVLE_Xq22.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3703"; model_cov "1525"; model_pct "26.9"; chrX rmsk exon 104532865 104534135 3133 - . gene_id "ERVLE_Xq22.3a"; transcript_id "ERVLE_Xq22.3a"; locus "ERVLE_Xq22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3703"; repClass "LTR"; repEnd "3408"; repFamily "ERVL"; repLeft "2177"; repStart "-2259"; chrX rmsk exon 104534186 104534478 1213 - . gene_id "ERVLE_Xq22.3a"; transcript_id "ERVLE_Xq22.3a"; locus "ERVLE_Xq22.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3703"; repClass "LTR"; repEnd "1608"; repFamily "ERVL"; repLeft "1314"; repStart "-4059"; ### HERVL_Xq22.3a ### chrX rmsk gene 104864519 104866006 . + . gene_id "HERVL_Xq22.3a"; transcript_id "HERVL_Xq22.3a"; locus "HERVL_Xq22.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1358"; model_cov "685"; model_pct "12.1"; chrX rmsk exon 104864519 104864767 1590 + . gene_id "HERVL_Xq22.3a"; transcript_id "HERVL_Xq22.3a"; locus "HERVL_Xq22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1358"; repClass "LTR"; repEnd "251"; repFamily "ERVL"; repLeft "-202"; repStart "2"; chrX rmsk exon 104864768 104865236 3451 + . gene_id "HERVL_Xq22.3a"; transcript_id "HERVL_Xq22.3a"; locus "HERVL_Xq22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1358"; repClass "LTR"; repEnd "2335"; repFamily "ERVL"; repLeft "-3319"; repStart "1868"; chrX rmsk exon 104865245 104865460 1381 + . gene_id "HERVL_Xq22.3a"; transcript_id "HERVL_Xq22.3a"; locus "HERVL_Xq22.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1358"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5436"; chrX rmsk exon 104865461 104866006 2060 + . gene_id "HERVL_Xq22.3a"; transcript_id "HERVL_Xq22.3a"; locus "HERVL_Xq22.3a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1358"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; ### HERV9_Xq22.3a ### chrX rmsk gene 104888418 104889804 . + . gene_id "HERV9_Xq22.3a"; transcript_id "HERV9_Xq22.3a"; locus "HERV9_Xq22.3a"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0187"; model_cov "1392"; model_pct "16.5"; chrX rmsk exon 104888418 104889804 10647 + . gene_id "HERV9_Xq22.3a"; transcript_id "HERV9_Xq22.3a"; locus "HERV9_Xq22.3a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0187"; repClass "LTR"; repEnd "7885"; repFamily "ERV1"; repLeft "-551"; repStart "6493"; ### MER4_Xq22.3a ### chrX rmsk gene 105420961 105424535 . - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0912"; model_cov "2815"; model_pct "42.7"; chrX rmsk exon 105420961 105421432 3258 - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0912"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 105421439 105423436 11929 - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0912"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "4557"; repStart "-2"; chrX rmsk exon 105423437 105423599 305 - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0912"; repClass "LTR"; repEnd "833"; repFamily "ERV1"; repLeft "619"; repStart "-5765"; chrX rmsk exon 105423606 105424081 2534 - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0912"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "1"; repStart "-6035"; chrX rmsk exon 105424085 105424535 3443 - . gene_id "MER4_Xq22.3a"; transcript_id "MER4_Xq22.3a"; locus "MER4_Xq22.3a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0912"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11D_Xq22.3 ### chrX rmsk gene 105666189 105669044 . - . gene_id "HERVK11D_Xq22.3"; transcript_id "HERVK11D_Xq22.3"; locus "HERVK11D_Xq22.3"; category "oneside"; intModel "HERVK11D-int"; locid "HERVK11D-int_0028"; model_cov "1985"; model_pct "25.6"; chrX rmsk exon 105666189 105667062 7315 - . gene_id "HERVK11D_Xq22.3"; transcript_id "HERVK11D_Xq22.3"; locus "HERVK11D_Xq22.3"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0028"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 105667063 105669044 16966 - . gene_id "HERVK11D_Xq22.3"; transcript_id "HERVK11D_Xq22.3"; locus "HERVK11D_Xq22.3"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0028"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "5767"; repStart "0"; ### HERVW_Xq22.3a ### chrX rmsk gene 106000793 106004122 . + . gene_id "HERVW_Xq22.3a"; transcript_id "HERVW_Xq22.3a"; locus "HERVW_Xq22.3a"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0316"; model_cov "3022"; model_pct "35.0"; chrX rmsk exon 106000793 106003489 21781 + . gene_id "HERVW_Xq22.3a"; transcript_id "HERVW_Xq22.3a"; locus "HERVW_Xq22.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0316"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "3326"; chrX rmsk exon 106003483 106003521 261 + . gene_id "HERVW_Xq22.3a"; transcript_id "HERVW_Xq22.3a"; locus "HERVW_Xq22.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0316"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "-1078"; repStart "7510"; chrX rmsk exon 106003512 106003804 2239 + . gene_id "HERVW_Xq22.3a"; transcript_id "HERVW_Xq22.3a"; locus "HERVW_Xq22.3a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0316"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8335"; chrX rmsk exon 106003805 106004122 2514 + . gene_id "HERVW_Xq22.3a"; transcript_id "HERVW_Xq22.3a"; locus "HERVW_Xq22.3a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0316"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERV316A3_Xq22.3a ### chrX rmsk gene 106028343 106030047 . + . gene_id "ERV316A3_Xq22.3a"; transcript_id "ERV316A3_Xq22.3a"; locus "ERV316A3_Xq22.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2806"; model_cov "1005"; model_pct "19.2"; chrX rmsk exon 106028343 106028757 1023 + . gene_id "ERV316A3_Xq22.3a"; transcript_id "ERV316A3_Xq22.3a"; locus "ERV316A3_Xq22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2806"; repClass "LTR"; repEnd "4496"; repFamily "ERVL"; repLeft "-730"; repStart "3972"; chrX rmsk exon 106029136 106029599 1176 + . gene_id "ERV316A3_Xq22.3a"; transcript_id "ERV316A3_Xq22.3a"; locus "ERV316A3_Xq22.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2806"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4745"; chrX rmsk exon 106029600 106030047 1506 + . gene_id "ERV316A3_Xq22.3a"; transcript_id "ERV316A3_Xq22.3a"; locus "ERV316A3_Xq22.3a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2806"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_Xq22.3b ### chrX rmsk gene 106040678 106041674 . - . gene_id "ERVLE_Xq22.3b"; transcript_id "ERVLE_Xq22.3b"; locus "ERVLE_Xq22.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3704"; model_cov "800"; model_pct "14.1"; chrX rmsk exon 106040678 106041114 380 - . gene_id "ERVLE_Xq22.3b"; transcript_id "ERVLE_Xq22.3b"; locus "ERVLE_Xq22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3704"; repClass "LTR"; repEnd "1042"; repFamily "ERVL"; repLeft "597"; repStart "-4625"; chrX rmsk exon 106041314 106041674 263 - . gene_id "ERVLE_Xq22.3b"; transcript_id "ERVLE_Xq22.3b"; locus "ERVLE_Xq22.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3704"; repClass "LTR"; repEnd "359"; repFamily "ERVL"; repLeft "4"; repStart "-5308"; ### ERVLE_Xq22.3c ### chrX rmsk gene 106041796 106043506 . + . gene_id "ERVLE_Xq22.3c"; transcript_id "ERVLE_Xq22.3c"; locus "ERVLE_Xq22.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3705"; model_cov "1778"; model_pct "31.4"; chrX rmsk exon 106041796 106043506 5977 + . gene_id "ERVLE_Xq22.3c"; transcript_id "ERVLE_Xq22.3c"; locus "ERVLE_Xq22.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3705"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "-168"; repStart "3721"; ### PRIMA4_Xq22.3 ### chrX rmsk gene 106047640 106049159 . + . gene_id "PRIMA4_Xq22.3"; transcript_id "PRIMA4_Xq22.3"; locus "PRIMA4_Xq22.3"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0253"; model_cov "1358"; model_pct "16.4"; chrX rmsk exon 106047640 106048577 1809 + . gene_id "PRIMA4_Xq22.3"; transcript_id "PRIMA4_Xq22.3"; locus "PRIMA4_Xq22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0253"; repClass "LTR"; repEnd "4193"; repFamily "ERV1"; repLeft "-4077"; repStart "3362"; chrX rmsk exon 106048646 106049159 1809 + . gene_id "PRIMA4_Xq22.3"; transcript_id "PRIMA4_Xq22.3"; locus "PRIMA4_Xq22.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0253"; repClass "LTR"; repEnd "4721"; repFamily "ERV1"; repLeft "-3549"; repStart "4194"; ### MER4_Xq22.3b ### chrX rmsk gene 106053992 106055490 . + . gene_id "MER4_Xq22.3b"; transcript_id "MER4_Xq22.3b"; locus "MER4_Xq22.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0913"; model_cov "1085"; model_pct "16.4"; chrX rmsk exon 106053992 106054463 3395 + . gene_id "MER4_Xq22.3b"; transcript_id "MER4_Xq22.3b"; locus "MER4_Xq22.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0913"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 106054469 106055019 2680 + . gene_id "MER4_Xq22.3b"; transcript_id "MER4_Xq22.3b"; locus "MER4_Xq22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0913"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "3"; chrX rmsk exon 106055007 106055089 323 + . gene_id "MER4_Xq22.3b"; transcript_id "MER4_Xq22.3b"; locus "MER4_Xq22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0913"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-7241"; repStart "-722"; chrX rmsk exon 106055180 106055490 1127 + . gene_id "MER4_Xq22.3b"; transcript_id "MER4_Xq22.3b"; locus "MER4_Xq22.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0913"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "-4163"; repStart "2112"; ### MER4B_Xq22.3a ### chrX rmsk gene 106055544 106056632 . + . gene_id "MER4B_Xq22.3a"; transcript_id "MER4B_Xq22.3a"; locus "MER4B_Xq22.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0529"; model_cov "1009"; model_pct "14.9"; chrX rmsk exon 106055544 106056194 4377 + . gene_id "MER4B_Xq22.3a"; transcript_id "MER4B_Xq22.3a"; locus "MER4B_Xq22.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0529"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-5911"; repStart "200"; chrX rmsk exon 106056216 106056429 1319 + . gene_id "MER4B_Xq22.3a"; transcript_id "MER4B_Xq22.3a"; locus "MER4B_Xq22.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0529"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "924"; chrX rmsk exon 106056495 106056632 508 + . gene_id "MER4B_Xq22.3a"; transcript_id "MER4B_Xq22.3a"; locus "MER4B_Xq22.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0529"; repClass "LTR"; repEnd "2061"; repFamily "ERV1"; repLeft "-4697"; repStart "1924"; ### ERVLE_Xq22.3d ### chrX rmsk gene 106102489 106104987 . + . gene_id "ERVLE_Xq22.3d"; transcript_id "ERVLE_Xq22.3d"; locus "ERVLE_Xq22.3d"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3708"; model_cov "2012"; model_pct "35.5"; chrX rmsk exon 106102489 106104296 6408 + . gene_id "ERVLE_Xq22.3d"; transcript_id "ERVLE_Xq22.3d"; locus "ERVLE_Xq22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3708"; repClass "LTR"; repEnd "5499"; repFamily "ERVL"; repLeft "-168"; repStart "3649"; chrX rmsk exon 106104661 106104823 750 + . gene_id "ERVLE_Xq22.3d"; transcript_id "ERVLE_Xq22.3d"; locus "ERVLE_Xq22.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3708"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5504"; chrX rmsk exon 106104825 106104987 1054 + . gene_id "ERVLE_Xq22.3d"; transcript_id "ERVLE_Xq22.3d"; locus "ERVLE_Xq22.3d"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3708"; repClass "LTR"; repEnd "166"; repFamily "ERVL"; repLeft "-497"; repStart "1"; ### ERVLE_Xq22.3e ### chrX rmsk gene 106115323 106116737 . - . gene_id "ERVLE_Xq22.3e"; transcript_id "ERVLE_Xq22.3e"; locus "ERVLE_Xq22.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3709"; model_cov "1412"; model_pct "24.9"; chrX rmsk exon 106115323 106116372 4320 - . gene_id "ERVLE_Xq22.3e"; transcript_id "ERVLE_Xq22.3e"; locus "ERVLE_Xq22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3709"; repClass "LTR"; repEnd "3155"; repFamily "ERVL"; repLeft "2059"; repStart "-2512"; chrX rmsk exon 106116429 106116737 1273 - . gene_id "ERVLE_Xq22.3e"; transcript_id "ERVLE_Xq22.3e"; locus "ERVLE_Xq22.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3709"; repClass "LTR"; repEnd "1936"; repFamily "ERVL"; repLeft "1620"; repStart "-3731"; ### MER4B_Xq22.3b ### chrX rmsk gene 106116761 106121348 . - . gene_id "MER4B_Xq22.3b"; transcript_id "MER4B_Xq22.3b"; locus "MER4B_Xq22.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0530"; model_cov "4221"; model_pct "62.5"; chrX rmsk exon 106116761 106117328 2648 - . gene_id "MER4B_Xq22.3b"; transcript_id "MER4B_Xq22.3b"; locus "MER4B_Xq22.3b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0530"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 106117329 106119561 14604 - . gene_id "MER4B_Xq22.3b"; transcript_id "MER4B_Xq22.3b"; locus "MER4B_Xq22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0530"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "4452"; repStart "0"; chrX rmsk exon 106119561 106120197 4412 - . gene_id "MER4B_Xq22.3b"; transcript_id "MER4B_Xq22.3b"; locus "MER4B_Xq22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0530"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3430"; repStart "-2670"; chrX rmsk exon 106120197 106121348 8683 - . gene_id "MER4B_Xq22.3b"; transcript_id "MER4B_Xq22.3b"; locus "MER4B_Xq22.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0530"; repClass "LTR"; repEnd "3099"; repFamily "ERV1"; repLeft "1842"; repStart "-3659"; ### LTR57_Xq22.3 ### chrX rmsk gene 106121349 106121887 . - . gene_id "LTR57_Xq22.3"; transcript_id "LTR57_Xq22.3"; locus "LTR57_Xq22.3"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0200"; model_cov "587"; model_pct "11.0"; chrX rmsk exon 106121349 106121887 1636 - . gene_id "LTR57_Xq22.3"; transcript_id "LTR57_Xq22.3"; locus "LTR57_Xq22.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0200"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "993"; repStart "-3763"; ### MER4B_Xq22.3c ### chrX rmsk gene 106121888 106124194 . - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0531"; model_cov "1567"; model_pct "23.2"; chrX rmsk exon 106121888 106122274 8683 - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0531"; repClass "LTR"; repEnd "3099"; repFamily "ERV1"; repLeft "2676"; repStart "-3659"; chrX rmsk exon 106122353 106123233 5240 - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0531"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "208"; repStart "-5608"; chrX rmsk exon 106123234 106123676 1382 - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0531"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "295"; repStart "0"; chrX rmsk exon 106123681 106123892 1168 - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0531"; repClass "LTR"; repEnd "204"; repFamily "ERV1"; repLeft "2"; repStart "-6554"; chrX rmsk exon 106123901 106124194 2215 - . gene_id "MER4B_Xq22.3c"; transcript_id "MER4B_Xq22.3c"; locus "MER4B_Xq22.3c"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0531"; repClass "LTR"; repEnd "757"; repFamily "ERV1"; repLeft "464"; repStart "-9"; ### HERV9_Xq22.3b ### chrX rmsk gene 106181088 106187060 . - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0189"; model_cov "5006"; model_pct "59.3"; chrX rmsk exon 106181088 106181610 3608 - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0189"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "1"; repStart "-228"; chrX rmsk exon 106181611 106182800 9784 - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0189"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7231"; repStart "0"; chrX rmsk exon 106182799 106183254 3743 - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0189"; repClass "LTR"; repEnd "6398"; repFamily "ERV1"; repLeft "5943"; repStart "-2038"; chrX rmsk exon 106183248 106186564 26444 - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0189"; repClass "LTR"; repEnd "3349"; repFamily "ERV1"; repLeft "3"; repStart "-5087"; chrX rmsk exon 106186565 106187060 3271 - . gene_id "HERV9_Xq22.3b"; transcript_id "HERV9_Xq22.3b"; locus "HERV9_Xq22.3b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0189"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "1"; repStart "-231"; ### ERV316A3_Xq22.3b ### chrX rmsk gene 106213331 106215320 . + . gene_id "ERV316A3_Xq22.3b"; transcript_id "ERV316A3_Xq22.3b"; locus "ERV316A3_Xq22.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2808"; model_cov "648"; model_pct "12.4"; chrX rmsk exon 106213331 106213507 289 + . gene_id "ERV316A3_Xq22.3b"; transcript_id "ERV316A3_Xq22.3b"; locus "ERV316A3_Xq22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2808"; repClass "LTR"; repEnd "1525"; repFamily "ERVL"; repLeft "-3701"; repStart "1356"; chrX rmsk exon 106214613 106215086 1072 + . gene_id "ERV316A3_Xq22.3b"; transcript_id "ERV316A3_Xq22.3b"; locus "ERV316A3_Xq22.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2808"; repClass "LTR"; repEnd "4116"; repFamily "ERVL"; repLeft "-1110"; repStart "3637"; chrX rmsk exon 106215129 106215320 653 + . gene_id "ERV316A3_Xq22.3b"; transcript_id "ERV316A3_Xq22.3b"; locus "ERV316A3_Xq22.3b"; repName "LTR16E2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2808"; repClass "LTR"; repEnd "568"; repFamily "ERVL"; repLeft "0"; repStart "373"; ### ERVLE_Xq22.3f ### chrX rmsk gene 106213899 106214608 . + . gene_id "ERVLE_Xq22.3f"; transcript_id "ERVLE_Xq22.3f"; locus "ERVLE_Xq22.3f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3710"; model_cov "750"; model_pct "13.2"; chrX rmsk exon 106213899 106214608 1232 + . gene_id "ERVLE_Xq22.3f"; transcript_id "ERVLE_Xq22.3f"; locus "ERVLE_Xq22.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3710"; repClass "LTR"; repEnd "3757"; repFamily "ERVL"; repLeft "-1910"; repStart "3007"; ### ERVLB4_Xq22.3 ### chrX rmsk gene 106227045 106228639 . - . gene_id "ERVLB4_Xq22.3"; transcript_id "ERVLB4_Xq22.3"; locus "ERVLB4_Xq22.3"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1871"; model_cov "790"; model_pct "13.8"; chrX rmsk exon 106227045 106227490 2129 - . gene_id "ERVLB4_Xq22.3"; transcript_id "ERVLB4_Xq22.3"; locus "ERVLB4_Xq22.3"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1871"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "1"; repStart "-42"; chrX rmsk exon 106227492 106228096 4773 - . gene_id "ERVLB4_Xq22.3"; transcript_id "ERVLB4_Xq22.3"; locus "ERVLB4_Xq22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1871"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5091"; repStart "-1"; chrX rmsk exon 106228471 106228639 4773 - . gene_id "ERVLB4_Xq22.3"; transcript_id "ERVLB4_Xq22.3"; locus "ERVLB4_Xq22.3"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1871"; repClass "LTR"; repEnd "5090"; repFamily "ERVL"; repLeft "4922"; repStart "-624"; ### MER4B_Xq22.3d ### chrX rmsk gene 106266291 106267377 . + . gene_id "MER4B_Xq22.3d"; transcript_id "MER4B_Xq22.3d"; locus "MER4B_Xq22.3d"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0532"; model_cov "1014"; model_pct "15.0"; chrX rmsk exon 106266291 106267094 2470 + . gene_id "MER4B_Xq22.3d"; transcript_id "MER4B_Xq22.3d"; locus "MER4B_Xq22.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0532"; repClass "LTR"; repEnd "4223"; repFamily "ERV1"; repLeft "-2535"; repStart "3422"; chrX rmsk exon 106267163 106267377 567 + . gene_id "MER4B_Xq22.3d"; transcript_id "MER4B_Xq22.3d"; locus "MER4B_Xq22.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0532"; repClass "LTR"; repEnd "4786"; repFamily "ERV1"; repLeft "-1972"; repStart "4573"; ### HERVL74_Xq22.3 ### chrX rmsk gene 106331458 106335977 . - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0145"; model_cov "2338"; model_pct "41.1"; chrX rmsk exon 106331458 106331869 1621 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "536"; repFamily "ERVL"; repLeft "123"; repStart "-86"; chrX rmsk exon 106331967 106332219 1406 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "5643"; repFamily "ERVL"; repLeft "5386"; repStart "-42"; chrX rmsk exon 106332217 106332558 1610 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "5251"; repFamily "ERVL"; repLeft "4903"; repStart "-434"; chrX rmsk exon 106333926 106334341 1493 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "4912"; repFamily "ERVL"; repLeft "4586"; repStart "-773"; chrX rmsk exon 106334644 106334700 923 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "3964"; repFamily "ERVL"; repLeft "3908"; repStart "-1721"; chrX rmsk exon 106334703 106334856 866 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "3643"; repFamily "ERVL"; repLeft "3490"; repStart "-2042"; chrX rmsk exon 106334862 106335094 1126 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "3329"; repFamily "ERVL"; repLeft "3098"; repStart "-2356"; chrX rmsk exon 106335107 106335977 3306 - . gene_id "HERVL74_Xq22.3"; transcript_id "HERVL74_Xq22.3"; locus "HERVL74_Xq22.3"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0145"; repClass "LTR"; repEnd "2475"; repFamily "ERVL"; repLeft "1508"; repStart "-3210"; ### MER4B_Xq22.3e ### chrX rmsk gene 106336209 106346170 . - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0534"; model_cov "6777"; model_pct "100.0"; chrX rmsk exon 106336209 106336820 3170 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; chrX rmsk exon 106336821 106337226 2420 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6365"; repStart "0"; chrX rmsk exon 106337275 106339819 30019 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "6343"; repFamily "ERV1"; repLeft "3855"; repStart "-415"; chrX rmsk exon 106340120 106340283 30019 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "3854"; repFamily "ERV1"; repLeft "3703"; repStart "-2904"; chrX rmsk exon 106340531 106342913 30019 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "3702"; repFamily "ERV1"; repLeft "1322"; repStart "-3056"; chrX rmsk exon 106343544 106344126 6615 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "1323"; repFamily "ERV1"; repLeft "748"; repStart "-5435"; chrX rmsk exon 106344788 106345298 6615 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "747"; repFamily "ERV1"; repLeft "238"; repStart "-6011"; chrX rmsk exon 106345345 106345610 1555 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "282"; repFamily "ERV1"; repLeft "1"; repStart "-6476"; chrX rmsk exon 106345611 106346170 2642 - . gene_id "MER4B_Xq22.3e"; transcript_id "MER4B_Xq22.3e"; locus "MER4B_Xq22.3e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0534"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-289"; repStart "0"; ### HERVL40_Xq22.3 ### chrX rmsk gene 106479692 106482512 . - . gene_id "HERVL40_Xq22.3"; transcript_id "HERVL40_Xq22.3"; locus "HERVL40_Xq22.3"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0483"; model_cov "893"; model_pct "16.1"; chrX rmsk exon 106479692 106479756 399 - . gene_id "HERVL40_Xq22.3"; transcript_id "HERVL40_Xq22.3"; locus "HERVL40_Xq22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0483"; repClass "LTR"; repEnd "5251"; repFamily "ERVL"; repLeft "5187"; repStart "-279"; chrX rmsk exon 106480072 106480226 457 - . gene_id "HERVL40_Xq22.3"; transcript_id "HERVL40_Xq22.3"; locus "HERVL40_Xq22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0483"; repClass "LTR"; repEnd "5019"; repFamily "ERVL"; repLeft "4859"; repStart "-511"; chrX rmsk exon 106480265 106480583 414 - . gene_id "HERVL40_Xq22.3"; transcript_id "HERVL40_Xq22.3"; locus "HERVL40_Xq22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0483"; repClass "LTR"; repEnd "4786"; repFamily "ERVL"; repLeft "4481"; repStart "-744"; chrX rmsk exon 106482167 106482512 550 - . gene_id "HERVL40_Xq22.3"; transcript_id "HERVL40_Xq22.3"; locus "HERVL40_Xq22.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0483"; repClass "LTR"; repEnd "2894"; repFamily "ERVL"; repLeft "2530"; repStart "-2636"; ### MER4_Xq22.3c ### chrX rmsk gene 106502502 106509359 . + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0914"; model_cov "5526"; model_pct "83.8"; chrX rmsk exon 106502502 106502942 3082 + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0914"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 106502946 106503908 7547 + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0914"; repClass "LTR"; repEnd "1165"; repFamily "ERV1"; repLeft "-5433"; repStart "3"; chrX rmsk exon 106503941 106505766 7547 + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0914"; repClass "LTR"; repEnd "2484"; repFamily "ERV1"; repLeft "-4114"; repStart "970"; chrX rmsk exon 106506072 106508914 14832 + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0914"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "-1"; repStart "3747"; chrX rmsk exon 106508923 106509359 2842 + . gene_id "MER4_Xq22.3c"; transcript_id "MER4_Xq22.3c"; locus "MER4_Xq22.3c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0914"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### HERVW_Xq22.3b ### chrX rmsk gene 106551265 106553257 . + . gene_id "HERVW_Xq22.3b"; transcript_id "HERVW_Xq22.3b"; locus "HERVW_Xq22.3b"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0317"; model_cov "1170"; model_pct "13.6"; chrX rmsk exon 106551265 106551763 3620 + . gene_id "HERVW_Xq22.3b"; transcript_id "HERVW_Xq22.3b"; locus "HERVW_Xq22.3b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0317"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "249"; chrX rmsk exon 106551764 106552620 8776 + . gene_id "HERVW_Xq22.3b"; transcript_id "HERVW_Xq22.3b"; locus "HERVW_Xq22.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0317"; repClass "LTR"; repEnd "864"; repFamily "ERV1"; repLeft "-7762"; repStart "2"; chrX rmsk exon 106552936 106553257 8776 + . gene_id "HERVW_Xq22.3b"; transcript_id "HERVW_Xq22.3b"; locus "HERVW_Xq22.3b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0317"; repClass "LTR"; repEnd "1173"; repFamily "ERV1"; repLeft "-7453"; repStart "865"; ### ERVLE_Xq22.3g ### chrX rmsk gene 106584809 106585694 . - . gene_id "ERVLE_Xq22.3g"; transcript_id "ERVLE_Xq22.3g"; locus "ERVLE_Xq22.3g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3714"; model_cov "969"; model_pct "17.1"; chrX rmsk exon 106584809 106585694 1357 - . gene_id "ERVLE_Xq22.3g"; transcript_id "ERVLE_Xq22.3g"; locus "ERVLE_Xq22.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3714"; repClass "LTR"; repEnd "5257"; repFamily "ERVL"; repLeft "4288"; repStart "-410"; ### ERVLE_Xq22.3h ### chrX rmsk gene 106585744 106586506 . + . gene_id "ERVLE_Xq22.3h"; transcript_id "ERVLE_Xq22.3h"; locus "ERVLE_Xq22.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3715"; model_cov "871"; model_pct "15.4"; chrX rmsk exon 106585744 106586506 1353 + . gene_id "ERVLE_Xq22.3h"; transcript_id "ERVLE_Xq22.3h"; locus "ERVLE_Xq22.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3715"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3714"; repStart "1082"; ### ERVLE_Xq22.3i ### chrX rmsk gene 106878282 106882375 . - . gene_id "ERVLE_Xq22.3i"; transcript_id "ERVLE_Xq22.3i"; locus "ERVLE_Xq22.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3716"; model_cov "1715"; model_pct "30.3"; chrX rmsk exon 106878282 106879067 2376 - . gene_id "ERVLE_Xq22.3i"; transcript_id "ERVLE_Xq22.3i"; locus "ERVLE_Xq22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3716"; repClass "LTR"; repEnd "2161"; repFamily "ERVL"; repLeft "1362"; repStart "-3506"; chrX rmsk exon 106880861 106881456 1434 - . gene_id "ERVLE_Xq22.3i"; transcript_id "ERVLE_Xq22.3i"; locus "ERVLE_Xq22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3716"; repClass "LTR"; repEnd "1365"; repFamily "ERVL"; repLeft "757"; repStart "-4302"; chrX rmsk exon 106882002 106882180 319 - . gene_id "ERVLE_Xq22.3i"; transcript_id "ERVLE_Xq22.3i"; locus "ERVLE_Xq22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3716"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "353"; repStart "-5138"; chrX rmsk exon 106882238 106882375 350 - . gene_id "ERVLE_Xq22.3i"; transcript_id "ERVLE_Xq22.3i"; locus "ERVLE_Xq22.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3716"; repClass "LTR"; repEnd "320"; repFamily "ERVL"; repLeft "188"; repStart "-5347"; ### ERV316A3_Xq22.3c ### chrX rmsk gene 107003404 107005335 . + . gene_id "ERV316A3_Xq22.3c"; transcript_id "ERV316A3_Xq22.3c"; locus "ERV316A3_Xq22.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2810"; model_cov "1275"; model_pct "24.4"; chrX rmsk exon 107003404 107003829 1625 + . gene_id "ERV316A3_Xq22.3c"; transcript_id "ERV316A3_Xq22.3c"; locus "ERV316A3_Xq22.3c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2810"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 107003926 107004120 780 + . gene_id "ERV316A3_Xq22.3c"; transcript_id "ERV316A3_Xq22.3c"; locus "ERV316A3_Xq22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2810"; repClass "LTR"; repEnd "472"; repFamily "ERVL"; repLeft "-4754"; repStart "271"; chrX rmsk exon 107004306 107005335 2564 + . gene_id "ERV316A3_Xq22.3c"; transcript_id "ERV316A3_Xq22.3c"; locus "ERV316A3_Xq22.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2810"; repClass "LTR"; repEnd "1543"; repFamily "ERVL"; repLeft "-3683"; repStart "469"; ### ERV316A3_Xq22.3d ### chrX rmsk gene 107011710 107013313 . + . gene_id "ERV316A3_Xq22.3d"; transcript_id "ERV316A3_Xq22.3d"; locus "ERV316A3_Xq22.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2811"; model_cov "1417"; model_pct "27.1"; chrX rmsk exon 107011710 107013133 4055 + . gene_id "ERV316A3_Xq22.3d"; transcript_id "ERV316A3_Xq22.3d"; locus "ERV316A3_Xq22.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2811"; repClass "LTR"; repEnd "3530"; repFamily "ERVL"; repLeft "-1696"; repStart "2113"; chrX rmsk exon 107013167 107013313 475 + . gene_id "ERV316A3_Xq22.3d"; transcript_id "ERV316A3_Xq22.3d"; locus "ERV316A3_Xq22.3d"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2811"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-21"; repStart "283"; ### HERVW_Xq22.3c ### chrX rmsk gene 107052131 107054871 . - . gene_id "HERVW_Xq22.3c"; transcript_id "HERVW_Xq22.3c"; locus "HERVW_Xq22.3c"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0318"; model_cov "2436"; model_pct "28.2"; chrX rmsk exon 107052131 107052447 2768 - . gene_id "HERVW_Xq22.3c"; transcript_id "HERVW_Xq22.3c"; locus "HERVW_Xq22.3c"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0318"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chrX rmsk exon 107052448 107054170 14858 - . gene_id "HERVW_Xq22.3c"; transcript_id "HERVW_Xq22.3c"; locus "HERVW_Xq22.3c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0318"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6902"; repStart "0"; chrX rmsk exon 107054162 107054871 6055 - . gene_id "HERVW_Xq22.3c"; transcript_id "HERVW_Xq22.3c"; locus "HERVW_Xq22.3c"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0318"; repClass "LTR"; repEnd "5067"; repFamily "ERV1"; repLeft "4355"; repStart "-3559"; ### MER41_Xq22.3 ### chrX rmsk gene 107278460 107280372 . - . gene_id "MER41_Xq22.3"; transcript_id "MER41_Xq22.3"; locus "MER41_Xq22.3"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0605"; model_cov "1795"; model_pct "30.2"; chrX rmsk exon 107278460 107278978 2457 - . gene_id "MER41_Xq22.3"; transcript_id "MER41_Xq22.3"; locus "MER41_Xq22.3"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0605"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 107278979 107279693 5078 - . gene_id "MER41_Xq22.3"; transcript_id "MER41_Xq22.3"; locus "MER41_Xq22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0605"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "5206"; repStart "0"; chrX rmsk exon 107279700 107280372 3497 - . gene_id "MER41_Xq22.3"; transcript_id "MER41_Xq22.3"; locus "MER41_Xq22.3"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0605"; repClass "LTR"; repEnd "3804"; repFamily "ERV1"; repLeft "2749"; repStart "-2142"; ### HERVL_Xq22.3b ### chrX rmsk gene 108142407 108148448 . - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1360"; model_cov "5075"; model_pct "89.8"; chrX rmsk exon 108142407 108142910 3099 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "-70"; repStart "0"; chrX rmsk exon 108142911 108144115 9814 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4441"; repStart "0"; chrX rmsk exon 108144112 108144933 6762 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "4571"; repFamily "ERVL"; repLeft "3740"; repStart "-1083"; chrX rmsk exon 108144933 108147978 25495 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "1"; repStart "-2622"; chrX rmsk exon 108147979 108148020 3076 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "386"; repStart "0"; chrX rmsk exon 108148077 108148448 3076 - . gene_id "HERVL_Xq22.3b"; transcript_id "HERVL_Xq22.3b"; locus "HERVL_Xq22.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1360"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "2"; repStart "-59"; ### HERVL_Xq22.3c ### chrX rmsk gene 108476940 108483623 . - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1361"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 108476940 108476984 266 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "401"; repStart "0"; chrX rmsk exon 108476978 108477237 1804 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "265"; repFamily "ERVL"; repLeft "1"; repStart "-179"; chrX rmsk exon 108477238 108477531 44358 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5359"; repStart "0"; chrX rmsk exon 108477842 108483159 44358 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "5358"; repFamily "ERVL"; repLeft "1"; repStart "-296"; chrX rmsk exon 108483160 108483203 2907 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "402"; repStart "0"; chrX rmsk exon 108483249 108483623 2907 - . gene_id "HERVL_Xq22.3c"; transcript_id "HERVL_Xq22.3c"; locus "HERVL_Xq22.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1361"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "4"; repStart "-43"; ### HERVL_Xq22.3d ### chrX rmsk gene 108814062 108818872 . - . gene_id "HERVL_Xq22.3d"; transcript_id "HERVL_Xq22.3d"; locus "HERVL_Xq22.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1362"; model_cov "4364"; model_pct "77.2"; chrX rmsk exon 108814062 108814478 2990 - . gene_id "HERVL_Xq22.3d"; transcript_id "HERVL_Xq22.3d"; locus "HERVL_Xq22.3d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1362"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "3"; repStart "-2"; chrX rmsk exon 108814481 108816788 17898 - . gene_id "HERVL_Xq22.3d"; transcript_id "HERVL_Xq22.3d"; locus "HERVL_Xq22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1362"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3374"; repStart "0"; chrX rmsk exon 108816786 108818872 16330 - . gene_id "HERVL_Xq22.3d"; transcript_id "HERVL_Xq22.3d"; locus "HERVL_Xq22.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1362"; repClass "LTR"; repEnd "2343"; repFamily "ERVL"; repLeft "259"; repStart "-3311"; ### HERVH_Xq22.3 ### chrX rmsk gene 109178345 109184158 . + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1267"; model_cov "5059"; model_pct "65.6"; chrX rmsk exon 109178345 109178794 4085 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 109178795 109181963 18699 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chrX rmsk exon 109181954 109182456 3167 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 109182459 109183121 4127 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 109183123 109183330 1237 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 109183331 109183709 2314 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 109183710 109184158 3768 + . gene_id "HERVH_Xq22.3"; transcript_id "HERVH_Xq22.3"; locus "HERVH_Xq22.3"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_1267"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVIP10FH_Xq22.3 ### chrX rmsk gene 109235983 109242363 . - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0208"; model_cov "5048"; model_pct "98.9"; chrX rmsk exon 109235983 109236432 2609 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "-47"; chrX rmsk exon 109236433 109238332 29649 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "3191"; repStart "0"; chrX rmsk exon 109238620 109241559 29649 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "3190"; repFamily "ERV1"; repLeft "490"; repStart "-1912"; chrX rmsk exon 109241583 109241856 471 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "-1945"; repFamily "ERV1"; repLeft "-2218"; repStart "-7047"; chrX rmsk exon 109241858 109242034 860 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "-2363"; repFamily "ERV1"; repLeft "-2527"; repStart "-7465"; chrX rmsk exon 109242231 109242363 895 - . gene_id "HERVIP10FH_Xq22.3"; transcript_id "HERVIP10FH_Xq22.3"; locus "HERVIP10FH_Xq22.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0208"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "381"; repStart "0"; ### ERVLE_Xq23a ### chrX rmsk gene 109494552 109495744 . - . gene_id "ERVLE_Xq23a"; transcript_id "ERVLE_Xq23a"; locus "ERVLE_Xq23a"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3717"; model_cov "823"; model_pct "14.5"; chrX rmsk exon 109494552 109495350 1709 - . gene_id "ERVLE_Xq23a"; transcript_id "ERVLE_Xq23a"; locus "ERVLE_Xq23a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3717"; repClass "LTR"; repEnd "5221"; repFamily "ERVL"; repLeft "4398"; repStart "-446"; chrX rmsk exon 109495352 109495744 1394 - . gene_id "ERVLE_Xq23a"; transcript_id "ERVLE_Xq23a"; locus "ERVLE_Xq23a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-E-int_3717"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "11"; repStart "0"; ### ERVLE_Xq23b ### chrX rmsk gene 109498958 109499733 . - . gene_id "ERVLE_Xq23b"; transcript_id "ERVLE_Xq23b"; locus "ERVLE_Xq23b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3718"; model_cov "829"; model_pct "14.6"; chrX rmsk exon 109498958 109499733 2055 - . gene_id "ERVLE_Xq23b"; transcript_id "ERVLE_Xq23b"; locus "ERVLE_Xq23b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3718"; repClass "LTR"; repEnd "4375"; repFamily "ERVL"; repLeft "3546"; repStart "-1292"; ### ERVLB4_Xq23a ### chrX rmsk gene 109503269 109505193 . - . gene_id "ERVLB4_Xq23a"; transcript_id "ERVLB4_Xq23a"; locus "ERVLB4_Xq23a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1873"; model_cov "1936"; model_pct "33.9"; chrX rmsk exon 109503269 109503761 1298 - . gene_id "ERVLB4_Xq23a"; transcript_id "ERVLB4_Xq23a"; locus "ERVLB4_Xq23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1873"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "3094"; repStart "-2118"; chrX rmsk exon 109503813 109504675 2234 - . gene_id "ERVLB4_Xq23a"; transcript_id "ERVLB4_Xq23a"; locus "ERVLB4_Xq23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1873"; repClass "LTR"; repEnd "3013"; repFamily "ERVL"; repLeft "2086"; repStart "-2701"; chrX rmsk exon 109504690 109505193 1280 - . gene_id "ERVLB4_Xq23a"; transcript_id "ERVLB4_Xq23a"; locus "ERVLB4_Xq23a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1873"; repClass "LTR"; repEnd "1957"; repFamily "ERVL"; repLeft "1450"; repStart "-3757"; ### MER41_Xq23a ### chrX rmsk gene 109550904 109555972 . + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0606"; model_cov "5314"; model_pct "89.4"; chrX rmsk exon 109550904 109551459 3839 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0606"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 109551460 109552133 4504 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0606"; repClass "LTR"; repEnd "690"; repFamily "ERV1"; repLeft "-5256"; repStart "1"; chrX rmsk exon 109552135 109552320 953 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0606"; repClass "LTR"; repEnd "1565"; repFamily "ERV1"; repLeft "-4381"; repStart "1379"; chrX rmsk exon 109552734 109553126 2707 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0606"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "-3000"; repStart "2543"; chrX rmsk exon 109553116 109555428 13450 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0606"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "0"; repStart "1910"; chrX rmsk exon 109555429 109555972 3946 + . gene_id "MER41_Xq23a"; transcript_id "MER41_Xq23a"; locus "MER41_Xq23a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0606"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xq23a ### chrX rmsk gene 109866074 109870862 . - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1268"; model_cov "4029"; model_pct "52.2"; chrX rmsk exon 109866074 109866543 4174 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 109866544 109866921 2535 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 109866922 109866984 424 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5753"; repStart "-1894"; chrX rmsk exon 109866989 109867430 3072 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "3930"; repFamily "ERV1"; repLeft "3492"; repStart "-3783"; chrX rmsk exon 109867421 109867567 848 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 109867562 109870421 20165 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 109870422 109870862 3842 - . gene_id "HERVH_Xq23a"; transcript_id "HERVH_Xq23a"; locus "HERVH_Xq23a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1268"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_Xq23a ### chrX rmsk gene 110595050 110596164 . + . gene_id "ERV316A3_Xq23a"; transcript_id "ERV316A3_Xq23a"; locus "ERV316A3_Xq23a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2812"; model_cov "1072"; model_pct "20.5"; chrX rmsk exon 110595050 110596164 3245 + . gene_id "ERV316A3_Xq23a"; transcript_id "ERV316A3_Xq23a"; locus "ERV316A3_Xq23a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2812"; repClass "LTR"; repEnd "3391"; repFamily "ERVL"; repLeft "-1835"; repStart "2319"; ### ERVLE_Xq23c ### chrX rmsk gene 111417311 111418617 . + . gene_id "ERVLE_Xq23c"; transcript_id "ERVLE_Xq23c"; locus "ERVLE_Xq23c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3719"; model_cov "1298"; model_pct "22.9"; chrX rmsk exon 111417311 111417420 283 + . gene_id "ERVLE_Xq23c"; transcript_id "ERVLE_Xq23c"; locus "ERVLE_Xq23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3719"; repClass "LTR"; repEnd "2654"; repFamily "ERVL"; repLeft "-3013"; repStart "2538"; chrX rmsk exon 111417443 111417782 759 + . gene_id "ERVLE_Xq23c"; transcript_id "ERVLE_Xq23c"; locus "ERVLE_Xq23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3719"; repClass "LTR"; repEnd "3419"; repFamily "ERVL"; repLeft "-2248"; repStart "3070"; chrX rmsk exon 111417833 111418617 2124 + . gene_id "ERVLE_Xq23c"; transcript_id "ERVLE_Xq23c"; locus "ERVLE_Xq23c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3719"; repClass "LTR"; repEnd "4823"; repFamily "ERVL"; repLeft "-844"; repStart "3990"; ### HERVH_Xq23b ### chrX rmsk gene 111543807 111549673 . + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1269"; model_cov "5061"; model_pct "65.6"; chrX rmsk exon 111543807 111544258 3348 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 111544261 111547467 20487 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chrX rmsk exon 111547458 111547962 3442 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 111547965 111548626 4307 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 111548628 111548843 1403 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 111548842 111549221 2442 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 111549222 111549673 3295 + . gene_id "HERVH_Xq23b"; transcript_id "HERVH_Xq23b"; locus "HERVH_Xq23b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1269"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### PABLA_Xq23 ### chrX rmsk gene 111555934 111561679 . - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0167"; model_cov "5004"; model_pct "99.8"; chrX rmsk exon 111555934 111556185 1950 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "1"; repStart "-405"; chrX rmsk exon 111556187 111557944 15528 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "3139"; repStart "-1"; chrX rmsk exon 111558242 111559200 15528 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "2666"; repFamily "ERV1"; repLeft "931"; repStart "-2349"; chrX rmsk exon 111559409 111559654 3542 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "1649"; repFamily "ERV1"; repLeft "1404"; repStart "-3366"; chrX rmsk exon 111559950 111560202 3542 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "1403"; repFamily "ERV1"; repLeft "1151"; repStart "-3612"; chrX rmsk exon 111560195 111561095 6392 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "899"; repFamily "ERV1"; repLeft "2"; repStart "-4116"; chrX rmsk exon 111561096 111561679 4390 - . gene_id "PABLA_Xq23"; transcript_id "PABLA_Xq23"; locus "PABLA_Xq23"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0167"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA4_Xq23 ### chrX rmsk gene 111672117 111675227 . - . gene_id "PRIMA4_Xq23"; transcript_id "PRIMA4_Xq23"; locus "PRIMA4_Xq23"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0256"; model_cov "3119"; model_pct "37.7"; chrX rmsk exon 111672117 111675227 3703 - . gene_id "PRIMA4_Xq23"; transcript_id "PRIMA4_Xq23"; locus "PRIMA4_Xq23"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0256"; repClass "LTR"; repEnd "6386"; repFamily "ERV1"; repLeft "3267"; repStart "-1884"; ### ERV316A3_Xq23b ### chrX rmsk gene 111790584 111793270 . + . gene_id "ERV316A3_Xq23b"; transcript_id "ERV316A3_Xq23b"; locus "ERV316A3_Xq23b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2813"; model_cov "1407"; model_pct "26.9"; chrX rmsk exon 111790584 111790748 1077 + . gene_id "ERV316A3_Xq23b"; transcript_id "ERV316A3_Xq23b"; locus "ERV316A3_Xq23b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2813"; repClass "LTR"; repEnd "206"; repFamily "ERVL"; repLeft "-245"; repStart "42"; chrX rmsk exon 111791050 111791215 1077 + . gene_id "ERV316A3_Xq23b"; transcript_id "ERV316A3_Xq23b"; locus "ERV316A3_Xq23b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2813"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "-71"; repStart "207"; chrX rmsk exon 111791216 111791836 3977 + . gene_id "ERV316A3_Xq23b"; transcript_id "ERV316A3_Xq23b"; locus "ERV316A3_Xq23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2813"; repClass "LTR"; repEnd "4462"; repFamily "ERVL"; repLeft "-764"; repStart "3807"; chrX rmsk exon 111792487 111793270 3977 + . gene_id "ERV316A3_Xq23b"; transcript_id "ERV316A3_Xq23b"; locus "ERV316A3_Xq23b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2813"; repClass "LTR"; repEnd "5215"; repFamily "ERVL"; repLeft "-11"; repStart "4463"; ### LTR25_Xq23 ### chrX rmsk gene 111858949 111861614 . - . gene_id "LTR25_Xq23"; transcript_id "LTR25_Xq23"; locus "LTR25_Xq23"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0153"; model_cov "2182"; model_pct "30.4"; chrX rmsk exon 111858949 111859111 1213 - . gene_id "LTR25_Xq23"; transcript_id "LTR25_Xq23"; locus "LTR25_Xq23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0153"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "7025"; repStart "-1"; chrX rmsk exon 111859263 111859900 10642 - . gene_id "LTR25_Xq23"; transcript_id "LTR25_Xq23"; locus "LTR25_Xq23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0153"; repClass "LTR"; repEnd "6629"; repFamily "ERV1"; repLeft "5991"; repStart "-559"; chrX rmsk exon 111860208 111861614 10642 - . gene_id "LTR25_Xq23"; transcript_id "LTR25_Xq23"; locus "LTR25_Xq23"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0153"; repClass "LTR"; repEnd "5990"; repFamily "ERV1"; repLeft "4608"; repStart "-1198"; ### ERVLB4_Xq23b ### chrX rmsk gene 111981035 111988030 . - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1874"; model_cov "5445"; model_pct "95.3"; chrX rmsk exon 111981035 111981541 2923 - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1874"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "-41"; chrX rmsk exon 111981543 111981851 7684 - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1874"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "5377"; repStart "-1"; chrX rmsk exon 111982238 111983207 7684 - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1874"; repClass "LTR"; repEnd "5376"; repFamily "ERVL"; repLeft "4401"; repStart "-338"; chrX rmsk exon 111983208 111987204 23629 - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1874"; repClass "LTR"; repEnd "4239"; repFamily "ERVL"; repLeft "105"; repStart "-1475"; chrX rmsk exon 111987739 111988030 1497 - . gene_id "ERVLB4_Xq23b"; transcript_id "ERVLB4_Xq23b"; locus "ERVLB4_Xq23b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1874"; repClass "LTR"; repEnd "286"; repFamily "ERVL"; repLeft "2"; repStart "-270"; ### HERVL_Xq23a ### chrX rmsk gene 112208915 112210178 . - . gene_id "HERVL_Xq23a"; transcript_id "HERVL_Xq23a"; locus "HERVL_Xq23a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1363"; model_cov "1208"; model_pct "21.4"; chrX rmsk exon 112208915 112210123 9363 - . gene_id "HERVL_Xq23a"; transcript_id "HERVL_Xq23a"; locus "HERVL_Xq23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1363"; repClass "LTR"; repEnd "4242"; repFamily "ERVL"; repLeft "3034"; repStart "-1412"; chrX rmsk exon 112210133 112210178 325 - . gene_id "HERVL_Xq23a"; transcript_id "HERVL_Xq23a"; locus "HERVL_Xq23a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1363"; repClass "LTR"; repEnd "48"; repFamily "ERVL"; repLeft "3"; repStart "-405"; ### ERV316A3_Xq23c ### chrX rmsk gene 112375949 112379271 . + . gene_id "ERV316A3_Xq23c"; transcript_id "ERV316A3_Xq23c"; locus "ERV316A3_Xq23c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2814"; model_cov "2836"; model_pct "54.3"; chrX rmsk exon 112375949 112376057 347 + . gene_id "ERV316A3_Xq23c"; transcript_id "ERV316A3_Xq23c"; locus "ERV316A3_Xq23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2814"; repClass "LTR"; repEnd "1993"; repFamily "ERVL"; repLeft "-3233"; repStart "1890"; chrX rmsk exon 112376224 112377224 5546 + . gene_id "ERV316A3_Xq23c"; transcript_id "ERV316A3_Xq23c"; locus "ERV316A3_Xq23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2814"; repClass "LTR"; repEnd "2844"; repFamily "ERVL"; repLeft "-2382"; repStart "1740"; chrX rmsk exon 112377630 112379271 5546 + . gene_id "ERV316A3_Xq23c"; transcript_id "ERV316A3_Xq23c"; locus "ERV316A3_Xq23c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2814"; repClass "LTR"; repEnd "4474"; repFamily "ERVL"; repLeft "-752"; repStart "2845"; ### MER41_Xq23b ### chrX rmsk gene 112494759 112500274 . - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0607"; model_cov "5070"; model_pct "85.3"; chrX rmsk exon 112494759 112495304 4032 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0607"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chrX rmsk exon 112495305 112497915 16960 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0607"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "3298"; repStart "-2"; chrX rmsk exon 112497902 112498606 4218 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0607"; repClass "LTR"; repEnd "2946"; repFamily "ERV1"; repLeft "2167"; repStart "-3000"; chrX rmsk exon 112498603 112499334 3760 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0607"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1175"; repStart "-3929"; chrX rmsk exon 112499326 112500000 4473 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0607"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "122"; repStart "-5138"; chrX rmsk exon 112500003 112500119 719 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0607"; repClass "LTR"; repEnd "119"; repFamily "ERV1"; repLeft "2"; repStart "-5827"; chrX rmsk exon 112500121 112500274 960 - . gene_id "MER41_Xq23b"; transcript_id "MER41_Xq23b"; locus "MER41_Xq23b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0607"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### ERVLE_Xq23d ### chrX rmsk gene 112521706 112522855 . + . gene_id "ERVLE_Xq23d"; transcript_id "ERVLE_Xq23d"; locus "ERVLE_Xq23d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3720"; model_cov "979"; model_pct "17.3"; chrX rmsk exon 112521706 112522175 1298 + . gene_id "ERVLE_Xq23d"; transcript_id "ERVLE_Xq23d"; locus "ERVLE_Xq23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3720"; repClass "LTR"; repEnd "4402"; repFamily "ERVL"; repLeft "-1265"; repStart "3927"; chrX rmsk exon 112522187 112522420 457 + . gene_id "ERVLE_Xq23d"; transcript_id "ERVLE_Xq23d"; locus "ERVLE_Xq23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3720"; repClass "LTR"; repEnd "4760"; repFamily "ERVL"; repLeft "-907"; repStart "4518"; chrX rmsk exon 112522596 112522855 719 + . gene_id "ERVLE_Xq23d"; transcript_id "ERVLE_Xq23d"; locus "ERVLE_Xq23d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3720"; repClass "LTR"; repEnd "5231"; repFamily "ERVL"; repLeft "-436"; repStart "4969"; ### HERVH_Xq23c ### chrX rmsk gene 112530380 112536357 . + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1270"; model_cov "5059"; model_pct "65.6"; chrX rmsk exon 112530380 112530831 3504 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 112530855 112534160 18846 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "1"; chrX rmsk exon 112534151 112534651 3156 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 112534654 112535308 3922 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 112535310 112535525 1323 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 112535526 112535905 2516 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 112535906 112536357 3484 + . gene_id "HERVH_Xq23c"; transcript_id "HERVH_Xq23c"; locus "HERVH_Xq23c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1270"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_Xq23d ### chrX rmsk gene 113108718 113114424 . - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1271"; model_cov "4897"; model_pct "63.5"; chrX rmsk exon 113108718 113109152 3161 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 113109153 113109532 2587 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 113109531 113109744 1422 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5602"; repStart "-1894"; chrX rmsk exon 113109748 113110410 4562 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 113110405 113110916 3523 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "4000"; repFamily "ERV1"; repLeft "3492"; repStart "-3713"; chrX rmsk exon 113110907 113111054 924 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 113111049 113113965 18837 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "17"; repStart "-4726"; chrX rmsk exon 113113984 113114424 3340 - . gene_id "HERVH_Xq23d"; transcript_id "HERVH_Xq23d"; locus "HERVH_Xq23d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1271"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_Xq23e ### chrX rmsk gene 113176131 113180558 . - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1272"; model_cov "3877"; model_pct "50.3"; chrX rmsk exon 113176131 113176598 1752 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 113176599 113177724 7611 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chrX rmsk exon 113177698 113178305 4373 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5772"; repStart "-1333"; chrX rmsk exon 113178305 113178485 1283 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chrX rmsk exon 113178488 113178992 3408 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 113178983 113179132 976 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 113179112 113180385 8581 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1740"; repStart "-4718"; chrX rmsk exon 113180418 113180558 664 - . gene_id "HERVH_Xq23e"; transcript_id "HERVH_Xq23e"; locus "HERVH_Xq23e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1272"; repClass "LTR"; repEnd "141"; repFamily "ERV1"; repLeft "15"; repStart "-323"; ### HERVL_Xq23b ### chrX rmsk gene 113760400 113765460 . + . gene_id "HERVL_Xq23b"; transcript_id "HERVL_Xq23b"; locus "HERVL_Xq23b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1364"; model_cov "4239"; model_pct "75.0"; chrX rmsk exon 113760400 113760830 3237 + . gene_id "HERVL_Xq23b"; transcript_id "HERVL_Xq23b"; locus "HERVL_Xq23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1364"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 113760831 113763928 24879 + . gene_id "HERVL_Xq23b"; transcript_id "HERVL_Xq23b"; locus "HERVL_Xq23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1364"; repClass "LTR"; repEnd "3110"; repFamily "ERVL"; repLeft "-2544"; repStart "1"; chrX rmsk exon 113763926 113765026 8528 + . gene_id "HERVL_Xq23b"; transcript_id "HERVL_Xq23b"; locus "HERVL_Xq23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1364"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4524"; chrX rmsk exon 113765027 113765460 3436 + . gene_id "HERVL_Xq23b"; transcript_id "HERVL_Xq23b"; locus "HERVL_Xq23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1364"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4_Xq23a ### chrX rmsk gene 113977809 113978786 . + . gene_id "MER4_Xq23a"; transcript_id "MER4_Xq23a"; locus "MER4_Xq23a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0915"; model_cov "1005"; model_pct "15.2"; chrX rmsk exon 113977809 113978718 2064 + . gene_id "MER4_Xq23a"; transcript_id "MER4_Xq23a"; locus "MER4_Xq23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0915"; repClass "LTR"; repEnd "-737"; repFamily "ERV1"; repLeft "-7335"; repStart "-1671"; chrX rmsk exon 113978716 113978786 399 + . gene_id "MER4_Xq23a"; transcript_id "MER4_Xq23a"; locus "MER4_Xq23a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0915"; repClass "LTR"; repEnd "813"; repFamily "ERV1"; repLeft "-5785"; repStart "742"; ### HERVH_Xq23f ### chrX rmsk gene 114040092 114045580 . + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1273"; model_cov "5203"; model_pct "67.5"; chrX rmsk exon 114040092 114040488 2458 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 114040491 114043399 15556 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chrX rmsk exon 114043379 114044230 5739 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3140"; chrX rmsk exon 114044234 114044416 1166 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4488"; chrX rmsk exon 114044414 114044987 3339 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4575"; chrX rmsk exon 114044992 114045207 1312 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 114045208 114045580 2057 + . gene_id "HERVH_Xq23f"; transcript_id "HERVH_Xq23f"; locus "HERVH_Xq23f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1273"; repClass "LTR"; repEnd "7709"; repFamily "ERV1"; repLeft "-4"; repStart "7324"; ### MER4B_Xq23a ### chrX rmsk gene 114052360 114059021 . + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0536"; model_cov "2701"; model_pct "40.0"; chrX rmsk exon 114052360 114052611 1499 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "-2572"; repStart "3925"; chrX rmsk exon 114052616 114052865 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "4545"; repFamily "ERV1"; repLeft "-2213"; repStart "4321"; chrX rmsk exon 114053175 114053659 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "5032"; repFamily "ERV1"; repLeft "-1726"; repStart "4546"; chrX rmsk exon 114054027 114054258 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "5255"; repFamily "ERV1"; repLeft "-1503"; repStart "5033"; chrX rmsk exon 114054577 114054876 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "5543"; repFamily "ERV1"; repLeft "-1215"; repStart "5256"; chrX rmsk exon 114055307 114055983 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "6211"; repFamily "ERV1"; repLeft "-547"; repStart "5544"; chrX rmsk exon 114056284 114056520 12619 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "6480"; repFamily "ERV1"; repLeft "-278"; repStart "6212"; chrX rmsk exon 114056904 114057141 1783 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "6701"; repFamily "ERV1"; repLeft "-57"; repStart "6471"; chrX rmsk exon 114057142 114057586 5383 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "422"; repFamily "ERV1"; repLeft "-359"; repStart "2"; chrX rmsk exon 114057899 114058220 5383 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "-1"; repStart "423"; chrX rmsk exon 114058221 114058281 1783 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6702"; chrX rmsk exon 114058282 114058621 3131 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-261"; repStart "1"; chrX rmsk exon 114058910 114059021 3131 + . gene_id "MER4B_Xq23a"; transcript_id "MER4B_Xq23a"; locus "MER4B_Xq23a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0536"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "-161"; repStart "350"; ### HERVH_Xq23g ### chrX rmsk gene 114466672 114472531 . + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1274"; model_cov "4916"; model_pct "63.7"; chrX rmsk exon 114466672 114467121 3375 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 114467124 114470178 16431 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chrX rmsk exon 114470158 114470306 981 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 114470297 114470801 3427 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 114470804 114471464 4228 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 114471466 114471682 1452 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 114471681 114472060 2614 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 114472061 114472531 3231 + . gene_id "HERVH_Xq23g"; transcript_id "HERVH_Xq23g"; locus "HERVH_Xq23g"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1274"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERVLE_Xq23e ### chrX rmsk gene 114550807 114551960 . - . gene_id "ERVLE_Xq23e"; transcript_id "ERVLE_Xq23e"; locus "ERVLE_Xq23e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3721"; model_cov "1205"; model_pct "21.3"; chrX rmsk exon 114550807 114551960 3184 - . gene_id "ERVLE_Xq23e"; transcript_id "ERVLE_Xq23e"; locus "ERVLE_Xq23e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3721"; repClass "LTR"; repEnd "4460"; repFamily "ERVL"; repLeft "3255"; repStart "-1207"; ### HERVH_Xq23h ### chrX rmsk gene 114601272 114607242 . - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1275"; model_cov "5065"; model_pct "65.7"; chrX rmsk exon 114601272 114601722 3451 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 114601723 114602104 2508 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 114602103 114602328 1393 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chrX rmsk exon 114602326 114602986 4260 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 114602989 114603495 3389 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 114603485 114606791 20126 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "3291"; repFamily "ERV1"; repLeft "1"; repStart "-4422"; chrX rmsk exon 114606794 114607242 3368 - . gene_id "HERVH_Xq23h"; transcript_id "HERVH_Xq23h"; locus "HERVH_Xq23h"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1275"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_Xq23c ### chrX rmsk gene 114930139 114931443 . + . gene_id "ERVLB4_Xq23c"; transcript_id "ERVLB4_Xq23c"; locus "ERVLB4_Xq23c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1875"; model_cov "894"; model_pct "15.6"; chrX rmsk exon 114930139 114930308 3673 + . gene_id "ERVLB4_Xq23c"; transcript_id "ERVLB4_Xq23c"; locus "ERVLB4_Xq23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1875"; repClass "LTR"; repEnd "4826"; repFamily "ERVL"; repLeft "-888"; repStart "4628"; chrX rmsk exon 114930367 114930607 3673 + . gene_id "ERVLB4_Xq23c"; transcript_id "ERVLB4_Xq23c"; locus "ERVLB4_Xq23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1875"; repClass "LTR"; repEnd "5111"; repFamily "ERVL"; repLeft "-603"; repStart "4827"; chrX rmsk exon 114930984 114931443 3673 + . gene_id "ERVLB4_Xq23c"; transcript_id "ERVLB4_Xq23c"; locus "ERVLB4_Xq23c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1875"; repClass "LTR"; repEnd "5524"; repFamily "ERVL"; repLeft "-190"; repStart "5112"; ### HERVL_Xq23c ### chrX rmsk gene 114993708 114997893 . - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1365"; model_cov "3165"; model_pct "56.0"; chrX rmsk exon 114993708 114993817 2410 - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1365"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "333"; repStart "0"; chrX rmsk exon 114993888 114994253 2410 - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1365"; repClass "LTR"; repEnd "394"; repFamily "ERVL"; repLeft "6"; repStart "-59"; chrX rmsk exon 114994263 114995322 8089 - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1365"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "4578"; repStart "-13"; chrX rmsk exon 114995319 114997441 15274 - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1365"; repClass "LTR"; repEnd "2103"; repFamily "ERVL"; repLeft "1"; repStart "-3551"; chrX rmsk exon 114997442 114997893 3023 - . gene_id "HERVL_Xq23c"; transcript_id "HERVL_Xq23c"; locus "HERVL_Xq23c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1365"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### MER41_Xq23c ### chrX rmsk gene 114998883 115000328 . + . gene_id "MER41_Xq23c"; transcript_id "MER41_Xq23c"; locus "MER41_Xq23c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0608"; model_cov "837"; model_pct "14.1"; chrX rmsk exon 114998883 114999012 5472 + . gene_id "MER41_Xq23c"; transcript_id "MER41_Xq23c"; locus "MER41_Xq23c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0608"; repClass "LTR"; repEnd "5193"; repFamily "ERV1"; repLeft "-753"; repStart "5075"; chrX rmsk exon 114999303 115000000 5472 + . gene_id "MER41_Xq23c"; transcript_id "MER41_Xq23c"; locus "MER41_Xq23c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0608"; repClass "LTR"; repEnd "5913"; repFamily "ERV1"; repLeft "-33"; repStart "5194"; chrX rmsk exon 115000033 115000328 2233 + . gene_id "MER41_Xq23c"; transcript_id "MER41_Xq23c"; locus "MER41_Xq23c"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0608"; repClass "LTR"; repEnd "296"; repFamily "ERV1"; repLeft "-338"; repStart "1"; ### MER4_Xq23b ### chrX rmsk gene 115109083 115110444 . - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0917"; model_cov "802"; model_pct "12.2"; chrX rmsk exon 115109083 115109161 482 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0917"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "397"; repStart "0"; chrX rmsk exon 115109163 115109232 498 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0917"; repClass "LTR"; repEnd "1402"; repFamily "ERV1"; repLeft "1324"; repStart "-5196"; chrX rmsk exon 115109265 115109313 498 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0917"; repClass "LTR"; repEnd "1323"; repFamily "ERV1"; repLeft "1266"; repStart "-5275"; chrX rmsk exon 115109360 115109449 259 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0917"; repClass "LTR"; repEnd "830"; repFamily "ERV1"; repLeft "751"; repStart "-5768"; chrX rmsk exon 115109499 115109994 2637 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0917"; repClass "LTR"; repEnd "589"; repFamily "ERV1"; repLeft "1"; repStart "-6009"; chrX rmsk exon 115109995 115110444 3180 - . gene_id "MER4_Xq23b"; transcript_id "MER4_Xq23b"; locus "MER4_Xq23b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0917"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV9_Xq23a ### chrX rmsk gene 115505603 115509852 . - . gene_id "HERV9_Xq23a"; transcript_id "HERV9_Xq23a"; locus "HERV9_Xq23a"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0191"; model_cov "3595"; model_pct "42.6"; chrX rmsk exon 115505603 115505861 1951 - . gene_id "HERV9_Xq23a"; transcript_id "HERV9_Xq23a"; locus "HERV9_Xq23a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0191"; repClass "LTR"; repEnd "7888"; repFamily "ERV1"; repLeft "7630"; repStart "-548"; chrX rmsk exon 115505859 115509226 25040 - . gene_id "HERV9_Xq23a"; transcript_id "HERV9_Xq23a"; locus "HERV9_Xq23a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0191"; repClass "LTR"; repEnd "3340"; repFamily "ERV1"; repLeft "3"; repStart "-5096"; chrX rmsk exon 115509230 115509852 4031 - . gene_id "HERV9_Xq23a"; transcript_id "HERV9_Xq23a"; locus "HERV9_Xq23a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0191"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "1"; repStart "-236"; ### HARLEQUIN_Xq23a ### chrX rmsk gene 115537733 115545656 . - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0186"; model_cov "6447"; model_pct "93.5"; chrX rmsk exon 115537733 115538194 3700 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 115538195 115542397 23154 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "2636"; repStart "0"; chrX rmsk exon 115542628 115543463 5597 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "2646"; repFamily "ERV1"; repLeft "1808"; repStart "-4250"; chrX rmsk exon 115543456 115544609 8248 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "1411"; repFamily "ERV1"; repLeft "263"; repStart "-5485"; chrX rmsk exon 115544610 115544810 1304 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "263"; repStart "-6432"; chrX rmsk exon 115545198 115545656 3536 - . gene_id "HARLEQUIN_Xq23a"; transcript_id "HARLEQUIN_Xq23a"; locus "HARLEQUIN_Xq23a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0186"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_Xq23b ### chrX rmsk gene 115916433 115924222 . - . gene_id "HARLEQUIN_Xq23b"; transcript_id "HARLEQUIN_Xq23b"; locus "HARLEQUIN_Xq23b"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0187"; model_cov "6895"; model_pct "100.0"; chrX rmsk exon 115916433 115916898 3185 - . gene_id "HARLEQUIN_Xq23b"; transcript_id "HARLEQUIN_Xq23b"; locus "HARLEQUIN_Xq23b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0187"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 115916899 115923779 43432 - . gene_id "HARLEQUIN_Xq23b"; transcript_id "HARLEQUIN_Xq23b"; locus "HARLEQUIN_Xq23b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0187"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 115923780 115924222 3522 - . gene_id "HARLEQUIN_Xq23b"; transcript_id "HARLEQUIN_Xq23b"; locus "HARLEQUIN_Xq23b"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0187"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER101_Xq23a ### chrX rmsk gene 115927004 115928542 . + . gene_id "MER101_Xq23a"; transcript_id "MER101_Xq23a"; locus "MER101_Xq23a"; category "internal"; intModel "MER101-int"; locid "MER101-int_0444"; model_cov "1145"; model_pct "17.2"; chrX rmsk exon 115927004 115927191 387 + . gene_id "MER101_Xq23a"; transcript_id "MER101_Xq23a"; locus "MER101_Xq23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0444"; repClass "LTR"; repEnd "3579"; repFamily "ERV1"; repLeft "-3060"; repStart "3456"; chrX rmsk exon 115927446 115928115 1637 + . gene_id "MER101_Xq23a"; transcript_id "MER101_Xq23a"; locus "MER101_Xq23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0444"; repClass "LTR"; repEnd "4274"; repFamily "ERV1"; repLeft "-2365"; repStart "3715"; chrX rmsk exon 115928085 115928542 1015 + . gene_id "MER101_Xq23a"; transcript_id "MER101_Xq23a"; locus "MER101_Xq23a"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0444"; repClass "LTR"; repEnd "2743"; repFamily "ERV1"; repLeft "-3896"; repStart "2280"; ### MER101_Xq23b ### chrX rmsk gene 115936603 115939995 . + . gene_id "MER101_Xq23b"; transcript_id "MER101_Xq23b"; locus "MER101_Xq23b"; category "internal"; intModel "MER101-int"; locid "MER101-int_0445"; model_cov "3800"; model_pct "57.2"; chrX rmsk exon 115936603 115937610 3361 + . gene_id "MER101_Xq23b"; transcript_id "MER101_Xq23b"; locus "MER101_Xq23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0445"; repClass "LTR"; repEnd "4870"; repFamily "ERV1"; repLeft "-1769"; repStart "3117"; chrX rmsk exon 115937879 115937940 2580 + . gene_id "MER101_Xq23b"; transcript_id "MER101_Xq23b"; locus "MER101_Xq23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0445"; repClass "LTR"; repEnd "4921"; repFamily "ERV1"; repLeft "-1718"; repStart "4871"; chrX rmsk exon 115938264 115939436 2833 + . gene_id "MER101_Xq23b"; transcript_id "MER101_Xq23b"; locus "MER101_Xq23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0445"; repClass "LTR"; repEnd "5411"; repFamily "ERV1"; repLeft "-1228"; repStart "3913"; chrX rmsk exon 115939522 115939995 906 + . gene_id "MER101_Xq23b"; transcript_id "MER101_Xq23b"; locus "MER101_Xq23b"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0445"; repClass "LTR"; repEnd "6636"; repFamily "ERV1"; repLeft "-3"; repStart "6137"; ### HERVH_Xq23i ### chrX rmsk gene 116010523 116014836 . + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1276"; model_cov "3099"; model_pct "40.2"; chrX rmsk exon 116010523 116010988 3153 + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1276"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 116010989 116011050 493 + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1276"; repClass "LTR"; repEnd "62"; repFamily "ERV1"; repLeft "-7651"; repStart "1"; chrX rmsk exon 116011054 116013855 6851 + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1276"; repClass "LTR"; repEnd "2768"; repFamily "ERV1"; repLeft "-4945"; repStart "1"; chrX rmsk exon 116013945 116014216 1473 + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1276"; repClass "LTR"; repEnd "5909"; repFamily "ERV1"; repLeft "-1804"; repStart "5638"; chrX rmsk exon 116014369 116014836 3236 + . gene_id "HERVH_Xq23i"; transcript_id "HERVH_Xq23i"; locus "HERVH_Xq23i"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1276"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_Xq23 ### chrX rmsk gene 116035253 116041455 . + . gene_id "HML3_Xq23"; transcript_id "HML3_Xq23"; locus "HML3_Xq23"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0250"; model_cov "5231"; model_pct "86.9"; chrX rmsk exon 116035253 116035720 3367 + . gene_id "HML3_Xq23"; transcript_id "HML3_Xq23"; locus "HML3_Xq23"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0250"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "33"; chrX rmsk exon 116035722 116036392 5028 + . gene_id "HML3_Xq23"; transcript_id "HML3_Xq23"; locus "HML3_Xq23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0250"; repClass "LTR"; repEnd "679"; repFamily "ERVK"; repLeft "-5342"; repStart "2"; chrX rmsk exon 116036389 116040961 27476 + . gene_id "HML3_Xq23"; transcript_id "HML3_Xq23"; locus "HML3_Xq23"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0250"; repClass "LTR"; repEnd "4260"; repFamily "ERVK"; repLeft "-1761"; repStart "-294"; chrX rmsk exon 116040976 116041455 3386 + . gene_id "HML3_Xq23"; transcript_id "HML3_Xq23"; locus "HML3_Xq23"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0250"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "37"; ### ERVL_Xq23 ### chrX rmsk gene 116195556 116199051 . + . gene_id "ERVL_Xq23"; transcript_id "ERVL_Xq23"; locus "ERVL_Xq23"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0494"; model_cov "2866"; model_pct "49.8"; chrX rmsk exon 116195556 116196010 13001 + . gene_id "ERVL_Xq23"; transcript_id "ERVL_Xq23"; locus "ERVL_Xq23"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0494"; repClass "LTR"; repEnd "661"; repFamily "ERVL"; repLeft "-5096"; repStart "201"; chrX rmsk exon 116196308 116198526 13001 + . gene_id "ERVL_Xq23"; transcript_id "ERVL_Xq23"; locus "ERVL_Xq23"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0494"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "-2891"; repStart "662"; chrX rmsk exon 116198854 116199051 1127 + . gene_id "ERVL_Xq23"; transcript_id "ERVL_Xq23"; locus "ERVL_Xq23"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0494"; repClass "LTR"; repEnd "3057"; repFamily "ERVL"; repLeft "-2700"; repStart "2855"; ### HERV9_Xq23b ### chrX rmsk gene 116243383 116251506 . + . gene_id "HERV9_Xq23b"; transcript_id "HERV9_Xq23b"; locus "HERV9_Xq23b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0192"; model_cov "6581"; model_pct "78.0"; chrX rmsk exon 116243383 116243982 4330 + . gene_id "HERV9_Xq23b"; transcript_id "HERV9_Xq23b"; locus "HERV9_Xq23b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0192"; repClass "LTR"; repEnd "696"; repFamily "ERV1"; repLeft "-130"; repStart "1"; chrX rmsk exon 116244005 116246920 24252 + . gene_id "HERV9_Xq23b"; transcript_id "HERV9_Xq23b"; locus "HERV9_Xq23b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0192"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "-5456"; repStart "60"; chrX rmsk exon 116246920 116250541 29983 + . gene_id "HERV9_Xq23b"; transcript_id "HERV9_Xq23b"; locus "HERV9_Xq23b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0192"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "4775"; chrX rmsk exon 116250542 116251506 5669 + . gene_id "HERV9_Xq23b"; transcript_id "HERV9_Xq23b"; locus "HERV9_Xq23b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0192"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### PRIMA41_Xq23a ### chrX rmsk gene 116289081 116293967 . + . gene_id "PRIMA41_Xq23a"; transcript_id "PRIMA41_Xq23a"; locus "PRIMA41_Xq23a"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0173"; model_cov "4086"; model_pct "52.7"; chrX rmsk exon 116289081 116289512 3052 + . gene_id "PRIMA41_Xq23a"; transcript_id "PRIMA41_Xq23a"; locus "PRIMA41_Xq23a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0173"; repClass "LTR"; repEnd "475"; repFamily "ERV1"; repLeft "-46"; repStart "1"; chrX rmsk exon 116289607 116293675 27664 + . gene_id "PRIMA41_Xq23a"; transcript_id "PRIMA41_Xq23a"; locus "PRIMA41_Xq23a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0173"; repClass "LTR"; repEnd "7756"; repFamily "ERV1"; repLeft "0"; repStart "3670"; chrX rmsk exon 116293676 116293967 1950 + . gene_id "PRIMA41_Xq23a"; transcript_id "PRIMA41_Xq23a"; locus "PRIMA41_Xq23a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0173"; repClass "LTR"; repEnd "306"; repFamily "ERV1"; repLeft "-215"; repStart "1"; ### HERVH_Xq23j ### chrX rmsk gene 116332006 116336841 . + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1277"; model_cov "4053"; model_pct "52.5"; chrX rmsk exon 116332006 116332395 2121 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chrX rmsk exon 116332402 116334243 11920 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1215"; chrX rmsk exon 116334223 116334372 897 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 116334372 116334608 1618 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "3736"; repFamily "ERV1"; repLeft "-3977"; repStart "3500"; chrX rmsk exon 116334602 116334905 1603 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "4290"; repFamily "ERV1"; repLeft "-3423"; repStart "3962"; chrX rmsk exon 116334904 116335828 6233 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4221"; chrX rmsk exon 116335830 116336042 1403 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 116336043 116336079 269 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "7360"; repFamily "ERV1"; repLeft "-353"; repStart "7324"; chrX rmsk exon 116336080 116336443 2280 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7337"; chrX rmsk exon 116336444 116336841 2535 + . gene_id "HERVH_Xq23j"; transcript_id "HERVH_Xq23j"; locus "HERVH_Xq23j"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1277"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP2_Xq23a ### chrX rmsk gene 116661081 116662918 . + . gene_id "HUERSP2_Xq23a"; transcript_id "HUERSP2_Xq23a"; locus "HUERSP2_Xq23a"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0126"; model_cov "1171"; model_pct "37.9"; chrX rmsk exon 116661081 116661424 4663 + . gene_id "HUERSP2_Xq23a"; transcript_id "HUERSP2_Xq23a"; locus "HUERSP2_Xq23a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0126"; repClass "LTR"; repEnd "755"; repFamily "ERV1"; repLeft "-2333"; repStart "426"; chrX rmsk exon 116661450 116662031 4663 + . gene_id "HUERSP2_Xq23a"; transcript_id "HUERSP2_Xq23a"; locus "HUERSP2_Xq23a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0126"; repClass "LTR"; repEnd "1347"; repFamily "ERV1"; repLeft "-1741"; repStart "756"; chrX rmsk exon 116662690 116662918 1305 + . gene_id "HUERSP2_Xq23a"; transcript_id "HUERSP2_Xq23a"; locus "HUERSP2_Xq23a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0126"; repClass "LTR"; repEnd "1590"; repFamily "ERV1"; repLeft "-1498"; repStart "1339"; ### MER61_Xq23a ### chrX rmsk gene 116662919 116667984 . - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0411"; model_cov "5215"; model_pct "100.0"; chrX rmsk exon 116662919 116663253 2140 - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0411"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 116663254 116663868 25396 - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0411"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4572"; repStart "0"; chrX rmsk exon 116664149 116667827 25396 - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0411"; repClass "LTR"; repEnd "4571"; repFamily "ERV1"; repLeft "1"; repStart "-646"; chrX rmsk exon 116667828 116667886 371 - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0411"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "283"; repStart "0"; chrX rmsk exon 116667879 116667984 615 - . gene_id "MER61_Xq23a"; transcript_id "MER61_Xq23a"; locus "MER61_Xq23a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0411"; repClass "LTR"; repEnd "106"; repFamily "ERV1"; repLeft "1"; repStart "-235"; ### HUERSP2_Xq23b ### chrX rmsk gene 116667985 116669014 . + . gene_id "HUERSP2_Xq23b"; transcript_id "HUERSP2_Xq23b"; locus "HUERSP2_Xq23b"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0127"; model_cov "1036"; model_pct "33.5"; chrX rmsk exon 116667985 116669014 6923 + . gene_id "HUERSP2_Xq23b"; transcript_id "HUERSP2_Xq23b"; locus "HUERSP2_Xq23b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0127"; repClass "LTR"; repEnd "2623"; repFamily "ERV1"; repLeft "-465"; repStart "1587"; ### HERVH_Xq23k ### chrX rmsk gene 116720317 116726712 . - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1278"; model_cov "5616"; model_pct "72.8"; chrX rmsk exon 116720317 116720724 2684 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "443"; repFamily "ERV1"; repLeft "1"; repStart "-7"; chrX rmsk exon 116720725 116721889 8351 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chrX rmsk exon 116721863 116722471 4419 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5772"; repStart "-1333"; chrX rmsk exon 116722471 116722650 1341 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "4667"; repFamily "ERV1"; repLeft "4488"; repStart "-3046"; chrX rmsk exon 116722653 116723153 3330 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 116723144 116723293 1010 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 116723273 116726295 18554 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 116726299 116726712 2608 - . gene_id "HERVH_Xq23k"; transcript_id "HERVH_Xq23k"; locus "HERVH_Xq23k"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1278"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVW_Xq23 ### chrX rmsk gene 116737956 116741447 . - . gene_id "HERVW_Xq23"; transcript_id "HERVW_Xq23"; locus "HERVW_Xq23"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0319"; model_cov "3194"; model_pct "37.0"; chrX rmsk exon 116737956 116738280 2688 - . gene_id "HERVW_Xq23"; transcript_id "HERVW_Xq23"; locus "HERVW_Xq23"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0319"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "1"; repStart "-454"; chrX rmsk exon 116738281 116738571 2339 - . gene_id "HERVW_Xq23"; transcript_id "HERVW_Xq23"; locus "HERVW_Xq23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0319"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chrX rmsk exon 116738593 116741447 23210 - . gene_id "HERVW_Xq23"; transcript_id "HERVW_Xq23"; locus "HERVW_Xq23"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0319"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "3116"; repStart "-2607"; ### ERVLB4_Xq23d ### chrX rmsk gene 116757340 116759031 . + . gene_id "ERVLB4_Xq23d"; transcript_id "ERVLB4_Xq23d"; locus "ERVLB4_Xq23d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1878"; model_cov "1700"; model_pct "29.8"; chrX rmsk exon 116757340 116759031 7912 + . gene_id "ERVLB4_Xq23d"; transcript_id "ERVLB4_Xq23d"; locus "ERVLB4_Xq23d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1878"; repClass "LTR"; repEnd "1719"; repFamily "ERVL"; repLeft "-3995"; repStart "19"; ### ERVLB4_Xq23e ### chrX rmsk gene 116761589 116762280 . + . gene_id "ERVLB4_Xq23e"; transcript_id "ERVLB4_Xq23e"; locus "ERVLB4_Xq23e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1879"; model_cov "702"; model_pct "12.3"; chrX rmsk exon 116761589 116762280 3779 + . gene_id "ERVLB4_Xq23e"; transcript_id "ERVLB4_Xq23e"; locus "ERVLB4_Xq23e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1879"; repClass "LTR"; repEnd "2429"; repFamily "ERVL"; repLeft "-3285"; repStart "1727"; ### HERVH_Xq23l ### chrX rmsk gene 116812448 116818222 . - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1279"; model_cov "4916"; model_pct "63.7"; chrX rmsk exon 116812448 116812927 3423 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 116812928 116813302 2449 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 116813301 116813517 1367 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 116813519 116814180 4371 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 116814183 116814687 3387 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 116814678 116814822 859 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 116814802 116817771 19959 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 116817774 116818222 3694 - . gene_id "HERVH_Xq23l"; transcript_id "HERVH_Xq23l"; locus "HERVH_Xq23l"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1279"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER61_Xq23b ### chrX rmsk gene 116927533 116928619 . - . gene_id "MER61_Xq23b"; transcript_id "MER61_Xq23b"; locus "MER61_Xq23b"; category "internal"; intModel "MER61-int"; locid "MER61-int_0412"; model_cov "1331"; model_pct "25.5"; chrX rmsk exon 116927533 116927613 418 - . gene_id "MER61_Xq23b"; transcript_id "MER61_Xq23b"; locus "MER61_Xq23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0412"; repClass "LTR"; repEnd "2354"; repFamily "ERV1"; repLeft "2283"; repStart "-2863"; chrX rmsk exon 116927603 116928619 3510 - . gene_id "MER61_Xq23b"; transcript_id "MER61_Xq23b"; locus "MER61_Xq23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0412"; repClass "LTR"; repEnd "2450"; repFamily "ERV1"; repLeft "1190"; repStart "-2767"; ### MER4B_Xq23b ### chrX rmsk gene 116931759 116941218 . - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0537"; model_cov "4122"; model_pct "61.0"; chrX rmsk exon 116931759 116932453 5873 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "6484"; repFamily "ERV1"; repLeft "5793"; repStart "-274"; chrX rmsk exon 116932759 116933336 5873 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "5792"; repFamily "ERV1"; repLeft "5210"; repStart "-966"; chrX rmsk exon 116935208 116936098 4444 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "4845"; repFamily "ERV1"; repLeft "3975"; repStart "-1913"; chrX rmsk exon 116936098 116936606 6011 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "2417"; repFamily "ERV1"; repLeft "2110"; repStart "-4341"; chrX rmsk exon 116938909 116939288 6011 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "2109"; repFamily "ERV1"; repLeft "1742"; repStart "-4649"; chrX rmsk exon 116939990 116940717 6011 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "1741"; repFamily "ERV1"; repLeft "924"; repStart "-5017"; chrX rmsk exon 116940741 116941218 2779 - . gene_id "MER4B_Xq23b"; transcript_id "MER4B_Xq23b"; locus "MER4B_Xq23b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0537"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "357"; repStart "-5913"; ### MER4_Xq23c ### chrX rmsk gene 116947474 116948996 . - . gene_id "MER4_Xq23c"; transcript_id "MER4_Xq23c"; locus "MER4_Xq23c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0919"; model_cov "1147"; model_pct "17.4"; chrX rmsk exon 116947474 116947833 1438 - . gene_id "MER4_Xq23c"; transcript_id "MER4_Xq23c"; locus "MER4_Xq23c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0919"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2112"; repStart "-4107"; chrX rmsk exon 116947886 116947998 424 - . gene_id "MER4_Xq23c"; transcript_id "MER4_Xq23c"; locus "MER4_Xq23c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0919"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 116947986 116948546 2481 - . gene_id "MER4_Xq23c"; transcript_id "MER4_Xq23c"; locus "MER4_Xq23c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0919"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chrX rmsk exon 116948550 116948996 2836 - . gene_id "MER4_Xq23c"; transcript_id "MER4_Xq23c"; locus "MER4_Xq23c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0919"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_Xq23b ### chrX rmsk gene 117074660 117079842 . - . gene_id "PRIMA41_Xq23b"; transcript_id "PRIMA41_Xq23b"; locus "PRIMA41_Xq23b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0174"; model_cov "5235"; model_pct "67.5"; chrX rmsk exon 117074660 117079842 28009 - . gene_id "PRIMA41_Xq23b"; transcript_id "PRIMA41_Xq23b"; locus "PRIMA41_Xq23b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0174"; repClass "LTR"; repEnd "5872"; repFamily "ERV1"; repLeft "637"; repStart "-1884"; ### MER61_Xq23c ### chrX rmsk gene 117172835 117178587 . + . gene_id "MER61_Xq23c"; transcript_id "MER61_Xq23c"; locus "MER61_Xq23c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0413"; model_cov "5192"; model_pct "99.5"; chrX rmsk exon 117172835 117173257 2450 + . gene_id "MER61_Xq23c"; transcript_id "MER61_Xq23c"; locus "MER61_Xq23c"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0413"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 117173272 117178182 20573 + . gene_id "MER61_Xq23c"; transcript_id "MER61_Xq23c"; locus "MER61_Xq23c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0413"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "-11"; repStart "14"; chrX rmsk exon 117178195 117178587 2183 + . gene_id "MER61_Xq23c"; transcript_id "MER61_Xq23c"; locus "MER61_Xq23c"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0413"; repClass "LTR"; repEnd "428"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xq23m ### chrX rmsk gene 117279323 117284879 . + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1280"; model_cov "4921"; model_pct "63.8"; chrX rmsk exon 117279323 117279570 1904 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "246"; repFamily "ERV1"; repLeft "-226"; repStart "1"; chrX rmsk exon 117279581 117282554 19565 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 117282549 117282696 879 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 117282687 117283179 3305 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 117283176 117283846 4156 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4478"; chrX rmsk exon 117283844 117284064 1379 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5597"; chrX rmsk exon 117284063 117284438 2595 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 117284439 117284879 3706 + . gene_id "HERVH_Xq23m"; transcript_id "HERVH_Xq23m"; locus "HERVH_Xq23m"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1280"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xq24a ### chrX rmsk gene 117417846 117422044 . + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1281"; model_cov "3492"; model_pct "45.3"; chrX rmsk exon 117417846 117418308 3749 + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1281"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 117418321 117418774 2528 + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1281"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "12"; chrX rmsk exon 117418836 117421040 12306 + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1281"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "801"; chrX rmsk exon 117421020 117421870 5032 + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1281"; repClass "LTR"; repEnd "3991"; repFamily "ERV1"; repLeft "-3722"; repStart "3140"; chrX rmsk exon 117421907 117422044 628 + . gene_id "HERVH_Xq24a"; transcript_id "HERVH_Xq24a"; locus "HERVH_Xq24a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1281"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "335"; ### HERVL_Xq24a ### chrX rmsk gene 117422838 117424085 . + . gene_id "HERVL_Xq24a"; transcript_id "HERVL_Xq24a"; locus "HERVL_Xq24a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1367"; model_cov "838"; model_pct "14.8"; chrX rmsk exon 117422838 117423670 6101 + . gene_id "HERVL_Xq24a"; transcript_id "HERVL_Xq24a"; locus "HERVL_Xq24a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1367"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4816"; chrX rmsk exon 117423671 117424085 2681 + . gene_id "HERVL_Xq24a"; transcript_id "HERVL_Xq24a"; locus "HERVL_Xq24a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1367"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-35"; repStart "1"; ### HERVL_Xq24b ### chrX rmsk gene 117651058 117652359 . + . gene_id "HERVL_Xq24b"; transcript_id "HERVL_Xq24b"; locus "HERVL_Xq24b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1368"; model_cov "891"; model_pct "15.8"; chrX rmsk exon 117651058 117651928 6719 + . gene_id "HERVL_Xq24b"; transcript_id "HERVL_Xq24b"; locus "HERVL_Xq24b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1368"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4763"; chrX rmsk exon 117651929 117652359 3076 + . gene_id "HERVL_Xq24b"; transcript_id "HERVL_Xq24b"; locus "HERVL_Xq24b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1368"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HML1_Xq24 ### chrX rmsk gene 118293074 118300736 . - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0127"; model_cov "5922"; model_pct "97.1"; chrX rmsk exon 118293074 118293407 2919 - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0127"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 118293411 118293539 835 - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0127"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chrX rmsk exon 118293602 118293814 1523 - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0127"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5662"; repStart "-199"; chrX rmsk exon 118294872 118300392 46141 - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0127"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "1"; repStart "-544"; chrX rmsk exon 118300393 118300736 3090 - . gene_id "HML1_Xq24"; transcript_id "HML1_Xq24"; locus "HML1_Xq24"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0127"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVP71A_Xq24 ### chrX rmsk gene 118884537 118891744 . + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; category "prototype"; intModel "HERVP71A-int"; locid "HERVP71A-int_0080"; model_cov "5372"; model_pct "70.8"; chrX rmsk exon 118884537 118885000 3522 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 118885001 118885740 29940 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "740"; repFamily "ERV1"; repLeft "-6850"; repStart "1"; chrX rmsk exon 118886054 118887808 29940 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "2508"; repFamily "ERV1"; repLeft "-5082"; repStart "741"; chrX rmsk exon 118888116 118889569 29940 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "3959"; repFamily "ERV1"; repLeft "-3631"; repStart "2509"; chrX rmsk exon 118889568 118889710 11543 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "6324"; repFamily "ERV1"; repLeft "-1266"; repStart "6173"; chrX rmsk exon 118890014 118891288 11543 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "7590"; repFamily "ERV1"; repLeft "0"; repStart "6325"; chrX rmsk exon 118891289 118891744 3500 + . gene_id "HERVP71A_Xq24"; transcript_id "HERVP71A_Xq24"; locus "HERVP71A_Xq24"; repName "LTR71A"; geneRegion "ltr"; locid "HERVP71A-int_0080"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_Xq24a ### chrX rmsk gene 119309708 119317310 . + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0920"; model_cov "5332"; model_pct "80.8"; chrX rmsk exon 119309708 119310162 3260 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0920"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 119310169 119310684 2661 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "2"; chrX rmsk exon 119310672 119310776 392 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chrX rmsk exon 119310817 119311183 1517 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "2499"; repFamily "ERV1"; repLeft "-4099"; repStart "2112"; chrX rmsk exon 119311186 119311427 1824 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "273"; repFamily "ERV1"; repLeft "-6325"; repStart "34"; chrX rmsk exon 119311539 119311667 866 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "989"; repFamily "ERV1"; repLeft "-5609"; repStart "855"; chrX rmsk exon 119311728 119312446 4621 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1745"; chrX rmsk exon 119312687 119312839 992 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "2889"; repFamily "ERV1"; repLeft "-3709"; repStart "2737"; chrX rmsk exon 119313041 119313421 1553 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3297"; chrX rmsk exon 119313421 119314796 8837 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "5262"; repFamily "ERV1"; repLeft "-1336"; repStart "3837"; chrX rmsk exon 119314799 119315092 7092 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "5787"; repFamily "ERV1"; repLeft "-811"; repStart "5498"; chrX rmsk exon 119315398 119315694 7092 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "6084"; repFamily "ERV1"; repLeft "-514"; repStart "5788"; chrX rmsk exon 119316002 119316312 7092 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "6399"; repFamily "ERV1"; repLeft "-199"; repStart "6085"; chrX rmsk exon 119316632 119316828 7092 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0920"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-3"; repStart "6400"; chrX rmsk exon 119316837 119317310 3494 + . gene_id "MER4_Xq24a"; transcript_id "MER4_Xq24a"; locus "MER4_Xq24a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0920"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_Xq24b ### chrX rmsk gene 119317773 119323471 . - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1282"; model_cov "4699"; model_pct "60.9"; chrX rmsk exon 119317773 119318214 2621 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 119318215 119318809 2655 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 119318811 119319481 4347 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chrX rmsk exon 119319478 119319977 3463 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrX rmsk exon 119319968 119320115 921 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 119320110 119323039 20943 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 119323040 119323471 2668 - . gene_id "HERVH_Xq24b"; transcript_id "HERVH_Xq24b"; locus "HERVH_Xq24b"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1282"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_Xq24b ### chrX rmsk gene 120035005 120038005 . + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0921"; model_cov "1377"; model_pct "20.9"; chrX rmsk exon 120035005 120035650 2524 + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0921"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 120035654 120035804 3287 + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0921"; repClass "LTR"; repEnd "175"; repFamily "ERV1"; repLeft "-6423"; repStart "1"; chrX rmsk exon 120036297 120036820 3287 + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0921"; repClass "LTR"; repEnd "812"; repFamily "ERV1"; repLeft "-5786"; repStart "176"; chrX rmsk exon 120036941 120037193 2186 + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0921"; repClass "LTR"; repEnd "1178"; repFamily "ERV1"; repLeft "-5420"; repStart "1142"; chrX rmsk exon 120037503 120038005 2186 + . gene_id "MER4_Xq24b"; transcript_id "MER4_Xq24b"; locus "MER4_Xq24b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0921"; repClass "LTR"; repEnd "1710"; repFamily "ERV1"; repLeft "-4888"; repStart "1179"; ### MER41_Xq24a ### chrX rmsk gene 120067084 120068400 . + . gene_id "MER41_Xq24a"; transcript_id "MER41_Xq24a"; locus "MER41_Xq24a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0611"; model_cov "1151"; model_pct "19.4"; chrX rmsk exon 120067084 120068400 3504 + . gene_id "MER41_Xq24a"; transcript_id "MER41_Xq24a"; locus "MER41_Xq24a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0611"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "-4507"; repStart "288"; ### HARLEQUIN_Xq24 ### chrX rmsk gene 120097944 120100486 . + . gene_id "HARLEQUIN_Xq24"; transcript_id "HARLEQUIN_Xq24"; locus "HARLEQUIN_Xq24"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0188"; model_cov "2578"; model_pct "37.4"; chrX rmsk exon 120097944 120100486 20803 + . gene_id "HARLEQUIN_Xq24"; transcript_id "HARLEQUIN_Xq24"; locus "HARLEQUIN_Xq24"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0188"; repClass "LTR"; repEnd "5069"; repFamily "ERV1"; repLeft "-1827"; repStart "2491"; ### MER4_Xq24c ### chrX rmsk gene 120101694 120103827 . + . gene_id "MER4_Xq24c"; transcript_id "MER4_Xq24c"; locus "MER4_Xq24c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0922"; model_cov "1833"; model_pct "27.8"; chrX rmsk exon 120101694 120101799 805 + . gene_id "MER4_Xq24c"; transcript_id "MER4_Xq24c"; locus "MER4_Xq24c"; repName "MER4B"; geneRegion "ltr"; locid "MER4-int_0922"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "504"; chrX rmsk exon 120101803 120102757 4574 + . gene_id "MER4_Xq24c"; transcript_id "MER4_Xq24c"; locus "MER4_Xq24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0922"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "-5546"; repStart "1"; chrX rmsk exon 120103044 120103121 4574 + . gene_id "MER4_Xq24c"; transcript_id "MER4_Xq24c"; locus "MER4_Xq24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0922"; repClass "LTR"; repEnd "1159"; repFamily "ERV1"; repLeft "-5439"; repStart "1053"; chrX rmsk exon 120103170 120103827 4574 + . gene_id "MER4_Xq24c"; transcript_id "MER4_Xq24c"; locus "MER4_Xq24c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0922"; repClass "LTR"; repEnd "1836"; repFamily "ERV1"; repLeft "-4762"; repStart "1160"; ### HERVIP10FH_Xq24 ### chrX rmsk gene 120143043 120145407 . + . gene_id "HERVIP10FH_Xq24"; transcript_id "HERVIP10FH_Xq24"; locus "HERVIP10FH_Xq24"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0210"; model_cov "1451"; model_pct "28.4"; chrX rmsk exon 120143043 120143628 4817 + . gene_id "HERVIP10FH_Xq24"; transcript_id "HERVIP10FH_Xq24"; locus "HERVIP10FH_Xq24"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0210"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 120143636 120144308 2188 + . gene_id "HERVIP10FH_Xq24"; transcript_id "HERVIP10FH_Xq24"; locus "HERVIP10FH_Xq24"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0210"; repClass "LTR"; repEnd "843"; repFamily "ERV1"; repLeft "-4259"; repStart "4"; chrX rmsk exon 120144780 120145407 4093 + . gene_id "HERVIP10FH_Xq24"; transcript_id "HERVIP10FH_Xq24"; locus "HERVIP10FH_Xq24"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0210"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "-2449"; repStart "2041"; ### MER41_Xq24b ### chrX rmsk gene 120167902 120169218 . - . gene_id "MER41_Xq24b"; transcript_id "MER41_Xq24b"; locus "MER41_Xq24b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0612"; model_cov "1151"; model_pct "19.4"; chrX rmsk exon 120167902 120169218 3521 - . gene_id "MER41_Xq24b"; transcript_id "MER41_Xq24b"; locus "MER41_Xq24b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0612"; repClass "LTR"; repEnd "1439"; repFamily "ERV1"; repLeft "288"; repStart "-4507"; ### HERVL18_Xq24 ### chrX rmsk gene 120205918 120208971 . + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0150"; model_cov "1991"; model_pct "32.9"; chrX rmsk exon 120205918 120206506 3927 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "614"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 120206528 120206823 1570 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "308"; repFamily "ERVL"; repLeft "-5739"; repStart "19"; chrX rmsk exon 120206801 120206973 800 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "666"; repFamily "ERVL"; repLeft "-5381"; repStart "492"; chrX rmsk exon 120207002 120207363 1203 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "1810"; repFamily "ERVL"; repLeft "-4237"; repStart "1388"; chrX rmsk exon 120207363 120207634 1350 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "2452"; repFamily "ERVL"; repLeft "-3595"; repStart "2119"; chrX rmsk exon 120207632 120208295 2983 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "3491"; repFamily "ERVL"; repLeft "-2556"; repStart "2718"; chrX rmsk exon 120208499 120208971 3699 + . gene_id "HERVL18_Xq24"; transcript_id "HERVL18_Xq24"; locus "HERVL18_Xq24"; repName "LTR18B"; geneRegion "ltr"; locid "HERVL18-int_0150"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "-122"; repStart "1"; ### MER4_Xq24d ### chrX rmsk gene 120227768 120235797 . + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0923"; model_cov "5186"; model_pct "78.6"; chrX rmsk exon 120227768 120228324 2571 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0923"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-54"; repStart "3"; chrX rmsk exon 120228862 120228921 2571 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0923"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "611"; chrX rmsk exon 120228925 120229497 3217 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chrX rmsk exon 120229485 120229579 435 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-7231"; repStart "-722"; chrX rmsk exon 120229611 120229951 1239 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "2132"; chrX rmsk exon 120229951 120230200 1654 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "284"; repFamily "ERV1"; repLeft "-6314"; repStart "29"; chrX rmsk exon 120230199 120231234 7787 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3461"; repStart "2735"; chrX rmsk exon 120231553 120233384 12795 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "5062"; repFamily "ERV1"; repLeft "-1536"; repStart "3138"; chrX rmsk exon 120233689 120235180 12795 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0923"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5063"; chrX rmsk exon 120235194 120235797 3795 + . gene_id "MER4_Xq24d"; transcript_id "MER4_Xq24d"; locus "MER4_Xq24d"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0923"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "5"; ### ERV316A3_Xq24a ### chrX rmsk gene 120400045 120402822 . + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2816"; model_cov "1492"; model_pct "28.5"; chrX rmsk exon 120400045 120400824 3311 + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2816"; repClass "LTR"; repEnd "4489"; repFamily "ERVL"; repLeft "-737"; repStart "3732"; chrX rmsk exon 120400959 120401114 3311 + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2816"; repClass "LTR"; repEnd "4642"; repFamily "ERVL"; repLeft "-584"; repStart "4490"; chrX rmsk exon 120401326 120401490 3311 + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2816"; repClass "LTR"; repEnd "4821"; repFamily "ERVL"; repLeft "-405"; repStart "4643"; chrX rmsk exon 120402044 120402454 1172 + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2816"; repClass "LTR"; repEnd "5223"; repFamily "ERVL"; repLeft "-3"; repStart "4818"; chrX rmsk exon 120402458 120402822 512 + . gene_id "ERV316A3_Xq24a"; transcript_id "ERV316A3_Xq24a"; locus "ERV316A3_Xq24a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2816"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER34B_Xq24 ### chrX rmsk gene 120512002 120512740 . + . gene_id "MER34B_Xq24"; transcript_id "MER34B_Xq24"; locus "MER34B_Xq24"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0289"; model_cov "540"; model_pct "10.1"; chrX rmsk exon 120512002 120512108 800 + . gene_id "MER34B_Xq24"; transcript_id "MER34B_Xq24"; locus "MER34B_Xq24"; repName "MER34C"; geneRegion "ltr"; locid "MER34B-int_0289"; repClass "LTR"; repEnd "549"; repFamily "ERV1"; repLeft "-2"; repStart "436"; chrX rmsk exon 120512201 120512445 972 + . gene_id "MER34B_Xq24"; transcript_id "MER34B_Xq24"; locus "MER34B_Xq24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0289"; repClass "LTR"; repEnd "374"; repFamily "ERV1"; repLeft "-4982"; repStart "107"; chrX rmsk exon 120512492 120512740 972 + . gene_id "MER34B_Xq24"; transcript_id "MER34B_Xq24"; locus "MER34B_Xq24"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0289"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "-4708"; repStart "375"; ### ERV316A3_Xq24b ### chrX rmsk gene 120667692 120668758 . + . gene_id "ERV316A3_Xq24b"; transcript_id "ERV316A3_Xq24b"; locus "ERV316A3_Xq24b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2817"; model_cov "574"; model_pct "11.0"; chrX rmsk exon 120667692 120668287 1149 + . gene_id "ERV316A3_Xq24b"; transcript_id "ERV316A3_Xq24b"; locus "ERV316A3_Xq24b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2817"; repClass "LTR"; repEnd "2434"; repFamily "ERVL"; repLeft "-2792"; repStart "1860"; chrX rmsk exon 120668305 120668758 2040 + . gene_id "ERV316A3_Xq24b"; transcript_id "ERV316A3_Xq24b"; locus "ERV316A3_Xq24b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2817"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP1_Xq24 ### chrX rmsk gene 121030055 121031653 . - . gene_id "HUERSP1_Xq24"; transcript_id "HUERSP1_Xq24"; locus "HUERSP1_Xq24"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0230"; model_cov "1010"; model_pct "16.1"; chrX rmsk exon 121030055 121030643 3728 - . gene_id "HUERSP1_Xq24"; transcript_id "HUERSP1_Xq24"; locus "HUERSP1_Xq24"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0230"; repClass "LTR"; repEnd "592"; repFamily "ERV1"; repLeft "1"; repStart "-99"; chrX rmsk exon 121030645 121031653 6288 - . gene_id "HUERSP1_Xq24"; transcript_id "HUERSP1_Xq24"; locus "HUERSP1_Xq24"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0230"; repClass "LTR"; repEnd "6262"; repFamily "ERV1"; repLeft "5252"; repStart "-1"; ### PRIMA41_Xq24 ### chrX rmsk gene 121151145 121155858 . + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; category "prototype"; intModel "PRIMA41-int"; locid "PRIMA41-int_0175"; model_cov "3761"; model_pct "48.5"; chrX rmsk exon 121151145 121151663 3920 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 121151750 121152639 6408 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "930"; repFamily "ERV1"; repLeft "-6826"; repStart "3"; chrX rmsk exon 121152632 121154001 10052 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "2754"; repFamily "ERV1"; repLeft "-5002"; repStart "1363"; chrX rmsk exon 121154000 121154197 1447 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "6364"; repFamily "ERV1"; repLeft "-1392"; repStart "6166"; chrX rmsk exon 121154192 121155441 8304 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "7750"; repFamily "ERV1"; repLeft "-6"; repStart "6505"; chrX rmsk exon 121155448 121155858 3998 + . gene_id "PRIMA41_Xq24"; transcript_id "PRIMA41_Xq24"; locus "PRIMA41_Xq24"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0175"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "-115"; repStart "1"; ### HERVH_Xq24c ### chrX rmsk gene 121343896 121348628 . - . gene_id "HERVH_Xq24c"; transcript_id "HERVH_Xq24c"; locus "HERVH_Xq24c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1283"; model_cov "3526"; model_pct "45.7"; chrX rmsk exon 121343896 121344307 2837 - . gene_id "HERVH_Xq24c"; transcript_id "HERVH_Xq24c"; locus "HERVH_Xq24c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1283"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 121344317 121345336 3818 - . gene_id "HERVH_Xq24c"; transcript_id "HERVH_Xq24c"; locus "HERVH_Xq24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1283"; repClass "LTR"; repEnd "7704"; repFamily "ERV1"; repLeft "7172"; repStart "-9"; chrX rmsk exon 121345316 121348264 17979 - . gene_id "HERVH_Xq24c"; transcript_id "HERVH_Xq24c"; locus "HERVH_Xq24c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1283"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrX rmsk exon 121348268 121348628 2279 - . gene_id "HERVH_Xq24c"; transcript_id "HERVH_Xq24c"; locus "HERVH_Xq24c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1283"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL_Xq24c ### chrX rmsk gene 121449325 121455728 . + . gene_id "HERVL_Xq24c"; transcript_id "HERVL_Xq24c"; locus "HERVL_Xq24c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1370"; model_cov "5651"; model_pct "99.9"; chrX rmsk exon 121449325 121449766 3172 + . gene_id "HERVL_Xq24c"; transcript_id "HERVL_Xq24c"; locus "HERVL_Xq24c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1370"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 121449767 121455292 34123 + . gene_id "HERVL_Xq24c"; transcript_id "HERVL_Xq24c"; locus "HERVL_Xq24c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1370"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chrX rmsk exon 121455295 121455728 2881 + . gene_id "HERVL_Xq24c"; transcript_id "HERVL_Xq24c"; locus "HERVL_Xq24c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1370"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_Xq24 ### chrX rmsk gene 121538387 121541566 . - . gene_id "ERVLE_Xq24"; transcript_id "ERVLE_Xq24"; locus "ERVLE_Xq24"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3722"; model_cov "2760"; model_pct "48.7"; chrX rmsk exon 121538387 121538910 1488 - . gene_id "ERVLE_Xq24"; transcript_id "ERVLE_Xq24"; locus "ERVLE_Xq24"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3722"; repClass "LTR"; repEnd "4077"; repFamily "ERVL"; repLeft "3555"; repStart "-1590"; chrX rmsk exon 121539115 121540148 1951 - . gene_id "ERVLE_Xq24"; transcript_id "ERVLE_Xq24"; locus "ERVLE_Xq24"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3722"; repClass "LTR"; repEnd "3284"; repFamily "ERVL"; repLeft "2231"; repStart "-2383"; chrX rmsk exon 121540212 121540325 468 - . gene_id "ERVLE_Xq24"; transcript_id "ERVLE_Xq24"; locus "ERVLE_Xq24"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3722"; repClass "LTR"; repEnd "2133"; repFamily "ERVL"; repLeft "2018"; repStart "-3534"; chrX rmsk exon 121540515 121541566 1808 - . gene_id "ERVLE_Xq24"; transcript_id "ERVLE_Xq24"; locus "ERVLE_Xq24"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3722"; repClass "LTR"; repEnd "1752"; repFamily "ERVL"; repLeft "682"; repStart "-3915"; ### ERVLB4_Xq24 ### chrX rmsk gene 121635051 121636749 . + . gene_id "ERVLB4_Xq24"; transcript_id "ERVLB4_Xq24"; locus "ERVLB4_Xq24"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1881"; model_cov "1083"; model_pct "19.0"; chrX rmsk exon 121635051 121636013 5263 + . gene_id "ERVLB4_Xq24"; transcript_id "ERVLB4_Xq24"; locus "ERVLB4_Xq24"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1881"; repClass "LTR"; repEnd "2825"; repFamily "ERVL"; repLeft "-2889"; repStart "1843"; chrX rmsk exon 121636639 121636749 5263 + . gene_id "ERVLB4_Xq24"; transcript_id "ERVLB4_Xq24"; locus "ERVLB4_Xq24"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1881"; repClass "LTR"; repEnd "2927"; repFamily "ERVL"; repLeft "-2787"; repStart "2826"; ### MER61_Xq25a ### chrX rmsk gene 121903416 121909275 . + . gene_id "MER61_Xq25a"; transcript_id "MER61_Xq25a"; locus "MER61_Xq25a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0415"; model_cov "5098"; model_pct "97.7"; chrX rmsk exon 121903416 121903800 2623 + . gene_id "MER61_Xq25a"; transcript_id "MER61_Xq25a"; locus "MER61_Xq25a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0415"; repClass "LTR"; repEnd "392"; repFamily "ERV1"; repLeft "-35"; repStart "1"; chrX rmsk exon 121903821 121904652 3439 + . gene_id "MER61_Xq25a"; transcript_id "MER61_Xq25a"; locus "MER61_Xq25a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0415"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "1"; chrX rmsk exon 121904653 121908874 25370 + . gene_id "MER61_Xq25a"; transcript_id "MER61_Xq25a"; locus "MER61_Xq25a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0415"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "958"; chrX rmsk exon 121908875 121909275 2512 + . gene_id "MER61_Xq25a"; transcript_id "MER61_Xq25a"; locus "MER61_Xq25a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0415"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; ### MER4_Xq25a ### chrX rmsk gene 121957103 121965158 . + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0925"; model_cov "6155"; model_pct "93.3"; chrX rmsk exon 121957103 121957570 3203 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0925"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 121958126 121958246 369 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-721"; chrX rmsk exon 121958294 121958653 1306 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chrX rmsk exon 121958653 121959272 3922 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "-5949"; repStart "29"; chrX rmsk exon 121959307 121959597 1590 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "1024"; repFamily "ERV1"; repLeft "-5574"; repStart "626"; chrX rmsk exon 121959572 121960261 4738 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "2606"; repFamily "ERV1"; repLeft "-3992"; repStart "1764"; chrX rmsk exon 121960481 121961357 4738 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2607"; chrX rmsk exon 121961357 121961910 15743 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "4445"; repFamily "ERV1"; repLeft "-2153"; repStart "3837"; chrX rmsk exon 121962607 121964698 15743 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0925"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "4446"; chrX rmsk exon 121964707 121965158 3194 + . gene_id "MER4_Xq25a"; transcript_id "MER4_Xq25a"; locus "MER4_Xq25a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0925"; repClass "LTR"; repEnd "455"; repFamily "ERV1"; repLeft "-17"; repStart "3"; ### HERVL_Xq25a ### chrX rmsk gene 121974546 121981190 . + . gene_id "HERVL_Xq25a"; transcript_id "HERVL_Xq25a"; locus "HERVL_Xq25a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1371"; model_cov "5489"; model_pct "97.1"; chrX rmsk exon 121974546 121975077 2371 + . gene_id "HERVL_Xq25a"; transcript_id "HERVL_Xq25a"; locus "HERVL_Xq25a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1371"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 121975079 121978279 15373 + . gene_id "HERVL_Xq25a"; transcript_id "HERVL_Xq25a"; locus "HERVL_Xq25a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1371"; repClass "LTR"; repEnd "2978"; repFamily "ERVL"; repLeft "-2676"; repStart "-101"; chrX rmsk exon 121978278 121980656 16645 + . gene_id "HERVL_Xq25a"; transcript_id "HERVL_Xq25a"; locus "HERVL_Xq25a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1371"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3244"; chrX rmsk exon 121980657 121981190 2247 + . gene_id "HERVL_Xq25a"; transcript_id "HERVL_Xq25a"; locus "HERVL_Xq25a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1371"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_Xq25a ### chrX rmsk gene 122114847 122115757 . - . gene_id "ERV316A3_Xq25a"; transcript_id "ERV316A3_Xq25a"; locus "ERV316A3_Xq25a"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2820"; model_cov "1122"; model_pct "21.5"; chrX rmsk exon 122114847 122115757 937 - . gene_id "ERV316A3_Xq25a"; transcript_id "ERV316A3_Xq25a"; locus "ERV316A3_Xq25a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2820"; repClass "LTR"; repEnd "4333"; repFamily "ERVL"; repLeft "3211"; repStart "-893"; ### MER61_Xq25b ### chrX rmsk gene 122189961 122196793 . + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; category "unknown"; intModel "MER61-int"; locid "MER61-int_0416"; model_cov "5543"; model_pct "100.0"; chrX rmsk exon 122189961 122190292 1947 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0416"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 122190294 122190950 2542 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0416"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "2"; chrX rmsk exon 122190944 122190985 319 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0416"; repClass "LTR"; repEnd "1361"; repFamily "ERV1"; repLeft "-3856"; repStart "1320"; chrX rmsk exon 122190986 122191017 232 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0416"; repClass "LTR"; repEnd "109"; repFamily "ERV1"; repLeft "-232"; repStart "78"; chrX rmsk exon 122191018 122191814 5056 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0416"; repClass "LTR"; repEnd "2223"; repFamily "ERV1"; repLeft "-2994"; repStart "1417"; chrX rmsk exon 122193470 122196459 15666 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0416"; repClass "LTR"; repEnd "4706"; repFamily "ERV1"; repLeft "-511"; repStart "785"; chrX rmsk exon 122196460 122196793 2218 + . gene_id "MER61_Xq25b"; transcript_id "MER61_Xq25b"; locus "MER61_Xq25b"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0416"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HERVL_Xq25b ### chrX rmsk gene 122198470 122200000 . - . gene_id "HERVL_Xq25b"; transcript_id "HERVL_Xq25b"; locus "HERVL_Xq25b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1372"; model_cov "1098"; model_pct "19.4"; chrX rmsk exon 122198470 122198911 3174 - . gene_id "HERVL_Xq25b"; transcript_id "HERVL_Xq25b"; locus "HERVL_Xq25b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1372"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "1"; repStart "-8"; chrX rmsk exon 122198912 122200000 8155 - . gene_id "HERVL_Xq25b"; transcript_id "HERVL_Xq25b"; locus "HERVL_Xq25b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1372"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4556"; repStart "0"; ### MER61_Xq25c ### chrX rmsk gene 122219886 122222003 . + . gene_id "MER61_Xq25c"; transcript_id "MER61_Xq25c"; locus "MER61_Xq25c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0418"; model_cov "1013"; model_pct "19.4"; chrX rmsk exon 122219886 122220341 2362 + . gene_id "MER61_Xq25c"; transcript_id "MER61_Xq25c"; locus "MER61_Xq25c"; repName "MER61D"; geneRegion "ltr"; locid "MER61-int_0418"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 122220512 122220595 357 + . gene_id "MER61_Xq25c"; transcript_id "MER61_Xq25c"; locus "MER61_Xq25c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0418"; repClass "LTR"; repEnd "-1450"; repFamily "ERV1"; repLeft "-6667"; repStart "-1537"; chrX rmsk exon 122220748 122222003 4530 + . gene_id "MER61_Xq25c"; transcript_id "MER61_Xq25c"; locus "MER61_Xq25c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0418"; repClass "LTR"; repEnd "4917"; repFamily "ERV1"; repLeft "-300"; repStart "3991"; ### HERVH_Xq25a ### chrX rmsk gene 122222004 122227785 . + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1284"; model_cov "4916"; model_pct "63.7"; chrX rmsk exon 122222004 122222454 3432 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 122222457 122225451 20475 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chrX rmsk exon 122225431 122225580 925 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 122225571 122226075 3330 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 122226078 122226739 4405 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 122226741 122226956 1375 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 122226955 122227334 2514 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 122227335 122227785 3408 + . gene_id "HERVH_Xq25a"; transcript_id "HERVH_Xq25a"; locus "HERVH_Xq25a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1284"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER41_Xq25a ### chrX rmsk gene 122227788 122231275 . + . gene_id "MER41_Xq25a"; transcript_id "MER41_Xq25a"; locus "MER41_Xq25a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0616"; model_cov "4687"; model_pct "78.8"; chrX rmsk exon 122227788 122231275 9697 + . gene_id "MER41_Xq25a"; transcript_id "MER41_Xq25a"; locus "MER41_Xq25a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0616"; repClass "LTR"; repEnd "5296"; repFamily "ERV1"; repLeft "-650"; repStart "609"; ### MER41_Xq25b ### chrX rmsk gene 122238108 122238831 . + . gene_id "MER41_Xq25b"; transcript_id "MER41_Xq25b"; locus "MER41_Xq25b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0617"; model_cov "656"; model_pct "11.0"; chrX rmsk exon 122238108 122238756 2870 + . gene_id "MER41_Xq25b"; transcript_id "MER41_Xq25b"; locus "MER41_Xq25b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0617"; repClass "LTR"; repEnd "5883"; repFamily "ERV1"; repLeft "-63"; repStart "5261"; chrX rmsk exon 122238797 122238831 1586 + . gene_id "MER41_Xq25b"; transcript_id "MER41_Xq25b"; locus "MER41_Xq25b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0617"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "-1"; repStart "5911"; ### MER4_Xq25b ### chrX rmsk gene 122322510 122323361 . + . gene_id "MER4_Xq25b"; transcript_id "MER4_Xq25b"; locus "MER4_Xq25b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0926"; model_cov "877"; model_pct "13.3"; chrX rmsk exon 122322510 122323361 5002 + . gene_id "MER4_Xq25b"; transcript_id "MER4_Xq25b"; locus "MER4_Xq25b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0926"; repClass "LTR"; repEnd "6397"; repFamily "ERV1"; repLeft "-201"; repStart "5520"; ### HERVL_Xq25c ### chrX rmsk gene 122335079 122338642 . - . gene_id "HERVL_Xq25c"; transcript_id "HERVL_Xq25c"; locus "HERVL_Xq25c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1373"; model_cov "2678"; model_pct "47.4"; chrX rmsk exon 122335079 122335514 3144 - . gene_id "HERVL_Xq25c"; transcript_id "HERVL_Xq25c"; locus "HERVL_Xq25c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1373"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 122335515 122336851 9727 - . gene_id "HERVL_Xq25c"; transcript_id "HERVL_Xq25c"; locus "HERVL_Xq25c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1373"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4334"; repStart "0"; chrX rmsk exon 122336845 122338200 11060 - . gene_id "HERVL_Xq25c"; transcript_id "HERVL_Xq25c"; locus "HERVL_Xq25c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1373"; repClass "LTR"; repEnd "1359"; repFamily "ERVL"; repLeft "1"; repStart "-4295"; chrX rmsk exon 122338201 122338642 3401 - . gene_id "HERVL_Xq25c"; transcript_id "HERVL_Xq25c"; locus "HERVL_Xq25c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1373"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_Xq25d ### chrX rmsk gene 122451735 122457359 . - . gene_id "HERVL_Xq25d"; transcript_id "HERVL_Xq25d"; locus "HERVL_Xq25d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1374"; model_cov "5090"; model_pct "90.0"; chrX rmsk exon 122451735 122452546 5900 - . gene_id "HERVL_Xq25d"; transcript_id "HERVL_Xq25d"; locus "HERVL_Xq25d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1374"; repClass "LTR"; repEnd "5276"; repFamily "ERVL"; repLeft "4467"; repStart "-378"; chrX rmsk exon 122452536 122456807 30804 - . gene_id "HERVL_Xq25d"; transcript_id "HERVL_Xq25d"; locus "HERVL_Xq25d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1374"; repClass "LTR"; repEnd "4282"; repFamily "ERVL"; repLeft "1"; repStart "-1372"; chrX rmsk exon 122456808 122457359 2346 - . gene_id "HERVL_Xq25d"; transcript_id "HERVL_Xq25d"; locus "HERVL_Xq25d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1374"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### HERVL_Xq25e ### chrX rmsk gene 122609061 122613562 . + . gene_id "HERVL_Xq25e"; transcript_id "HERVL_Xq25e"; locus "HERVL_Xq25e"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1375"; model_cov "4014"; model_pct "71.0"; chrX rmsk exon 122609061 122609456 3074 + . gene_id "HERVL_Xq25e"; transcript_id "HERVL_Xq25e"; locus "HERVL_Xq25e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1375"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "-43"; repStart "1"; chrX rmsk exon 122609512 122609556 3074 + . gene_id "HERVL_Xq25e"; transcript_id "HERVL_Xq25e"; locus "HERVL_Xq25e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1375"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "411"; chrX rmsk exon 122609557 122612969 23449 + . gene_id "HERVL_Xq25e"; transcript_id "HERVL_Xq25e"; locus "HERVL_Xq25e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1375"; repClass "LTR"; repEnd "3423"; repFamily "ERVL"; repLeft "-2231"; repStart "1"; chrX rmsk exon 122612968 122613562 4587 + . gene_id "HERVL_Xq25e"; transcript_id "HERVL_Xq25e"; locus "HERVL_Xq25e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1375"; repClass "LTR"; repEnd "4443"; repFamily "ERVL"; repLeft "-1211"; repStart "3851"; ### LTR25_Xq25a ### chrX rmsk gene 122613552 122615666 . + . gene_id "LTR25_Xq25a"; transcript_id "LTR25_Xq25a"; locus "LTR25_Xq25a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0155"; model_cov "2136"; model_pct "29.7"; chrX rmsk exon 122613552 122615666 13343 + . gene_id "LTR25_Xq25a"; transcript_id "LTR25_Xq25a"; locus "LTR25_Xq25a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0155"; repClass "LTR"; repEnd "4305"; repFamily "ERV1"; repLeft "-2883"; repStart "2169"; ### HERVH48_Xq25 ### chrX rmsk gene 123130981 123132861 . + . gene_id "HERVH48_Xq25"; transcript_id "HERVH48_Xq25"; locus "HERVH48_Xq25"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0056"; model_cov "1541"; model_pct "23.2"; chrX rmsk exon 123130981 123131589 4606 + . gene_id "HERVH48_Xq25"; transcript_id "HERVH48_Xq25"; locus "HERVH48_Xq25"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0056"; repClass "LTR"; repEnd "5440"; repFamily "ERV1"; repLeft "-1214"; repStart "4832"; chrX rmsk exon 123131586 123132513 7309 + . gene_id "HERVH48_Xq25"; transcript_id "HERVH48_Xq25"; locus "HERVH48_Xq25"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0056"; repClass "LTR"; repEnd "6652"; repFamily "ERV1"; repLeft "-2"; repStart "5719"; chrX rmsk exon 123132516 123132861 2736 + . gene_id "HERVH48_Xq25"; transcript_id "HERVH48_Xq25"; locus "HERVH48_Xq25"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0056"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-61"; repStart "1"; ### ERV316A3_Xq25b ### chrX rmsk gene 123501894 123504514 . + . gene_id "ERV316A3_Xq25b"; transcript_id "ERV316A3_Xq25b"; locus "ERV316A3_Xq25b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2821"; model_cov "2238"; model_pct "42.8"; chrX rmsk exon 123501894 123502068 476 + . gene_id "ERV316A3_Xq25b"; transcript_id "ERV316A3_Xq25b"; locus "ERV316A3_Xq25b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2821"; repClass "LTR"; repEnd "181"; repFamily "ERVL"; repLeft "-241"; repStart "1"; chrX rmsk exon 123502076 123502374 874 + . gene_id "ERV316A3_Xq25b"; transcript_id "ERV316A3_Xq25b"; locus "ERV316A3_Xq25b"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2821"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "-7"; repStart "131"; chrX rmsk exon 123502503 123504514 4459 + . gene_id "ERV316A3_Xq25b"; transcript_id "ERV316A3_Xq25b"; locus "ERV316A3_Xq25b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2821"; repClass "LTR"; repEnd "1905"; repFamily "ERVL"; repLeft "-3321"; repStart "-333"; ### ERV316A3_Xq25c ### chrX rmsk gene 123509623 123513073 . + . gene_id "ERV316A3_Xq25c"; transcript_id "ERV316A3_Xq25c"; locus "ERV316A3_Xq25c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2822"; model_cov "3197"; model_pct "61.2"; chrX rmsk exon 123509623 123509879 349 + . gene_id "ERV316A3_Xq25c"; transcript_id "ERV316A3_Xq25c"; locus "ERV316A3_Xq25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2822"; repClass "LTR"; repEnd "2187"; repFamily "ERVL"; repLeft "-3039"; repStart "1729"; chrX rmsk exon 123509902 123512665 10034 + . gene_id "ERV316A3_Xq25c"; transcript_id "ERV316A3_Xq25c"; locus "ERV316A3_Xq25c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2822"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "2487"; chrX rmsk exon 123512666 123513073 1197 + . gene_id "ERV316A3_Xq25c"; transcript_id "ERV316A3_Xq25c"; locus "ERV316A3_Xq25c"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2822"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-19"; repStart "-15"; ### HERVL_Xq25f ### chrX rmsk gene 123547924 123550520 . + . gene_id "HERVL_Xq25f"; transcript_id "HERVL_Xq25f"; locus "HERVL_Xq25f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1376"; model_cov "2212"; model_pct "39.1"; chrX rmsk exon 123547924 123550123 17002 + . gene_id "HERVL_Xq25f"; transcript_id "HERVL_Xq25f"; locus "HERVL_Xq25f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1376"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "-8"; repStart "3434"; chrX rmsk exon 123550124 123550520 3108 + . gene_id "HERVL_Xq25f"; transcript_id "HERVL_Xq25f"; locus "HERVL_Xq25f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1376"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "4"; ### ERVLE_Xq25 ### chrX rmsk gene 123740784 123748574 . - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3723"; model_cov "4628"; model_pct "81.7"; chrX rmsk exon 123740784 123741506 1607 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "4523"; repStart "-383"; chrX rmsk exon 123743181 123744402 6100 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "3264"; repStart "-1144"; chrX rmsk exon 123744717 123744819 6100 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "3263"; repFamily "ERVL"; repLeft "3198"; repStart "-2404"; chrX rmsk exon 123745115 123745733 6100 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "3197"; repFamily "ERVL"; repLeft "2539"; repStart "-2470"; chrX rmsk exon 123745768 123746123 847 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "2093"; repStart "-3216"; chrX rmsk exon 123746141 123746246 996 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "2011"; repFamily "ERVL"; repLeft "1909"; repStart "-3656"; chrX rmsk exon 123746556 123747157 996 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "1987"; repFamily "ERVL"; repLeft "1261"; repStart "-3680"; chrX rmsk exon 123747271 123747372 748 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "1247"; repFamily "ERVL"; repLeft "1153"; repStart "-4420"; chrX rmsk exon 123747685 123747927 670 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "697"; repFamily "ERVL"; repLeft "462"; repStart "-4970"; chrX rmsk exon 123748207 123748574 670 - . gene_id "ERVLE_Xq25"; transcript_id "ERVLE_Xq25"; locus "ERVLE_Xq25"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3723"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "91"; repStart "-5206"; ### HERVL_Xq25g ### chrX rmsk gene 124156239 124163053 . - . gene_id "HERVL_Xq25g"; transcript_id "HERVL_Xq25g"; locus "HERVL_Xq25g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1377"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 124156239 124156646 3157 - . gene_id "HERVL_Xq25g"; transcript_id "HERVL_Xq25g"; locus "HERVL_Xq25g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1377"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "1"; repStart "-40"; chrX rmsk exon 124156647 124160293 46012 - . gene_id "HERVL_Xq25g"; transcript_id "HERVL_Xq25g"; locus "HERVL_Xq25g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1377"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2029"; repStart "0"; chrX rmsk exon 124160588 124162616 46012 - . gene_id "HERVL_Xq25g"; transcript_id "HERVL_Xq25g"; locus "HERVL_Xq25g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1377"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "1"; repStart "-3626"; chrX rmsk exon 124162617 124163053 3519 - . gene_id "HERVL_Xq25g"; transcript_id "HERVL_Xq25g"; locus "HERVL_Xq25g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1377"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP1_Xq25 ### chrX rmsk gene 124163056 124164906 . - . gene_id "HUERSP1_Xq25"; transcript_id "HUERSP1_Xq25"; locus "HUERSP1_Xq25"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0232"; model_cov "1312"; model_pct "20.9"; chrX rmsk exon 124163056 124163272 1428 - . gene_id "HUERSP1_Xq25"; transcript_id "HUERSP1_Xq25"; locus "HUERSP1_Xq25"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0232"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "397"; repStart "-5647"; chrX rmsk exon 124163275 124164208 2174 - . gene_id "HUERSP1_Xq25"; transcript_id "HUERSP1_Xq25"; locus "HUERSP1_Xq25"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0232"; repClass "LTR"; repEnd "1094"; repFamily "ERV1"; repLeft "1"; repStart "-5169"; chrX rmsk exon 124164209 124164906 3749 - . gene_id "HUERSP1_Xq25"; transcript_id "HUERSP1_Xq25"; locus "HUERSP1_Xq25"; repName "LTR8A"; geneRegion "ltr"; locid "HUERS-P1-int_0232"; repClass "LTR"; repEnd "727"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_Xq25b ### chrX rmsk gene 125388838 125394560 . - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1285"; model_cov "4897"; model_pct "63.5"; chrX rmsk exon 125388838 125389290 3439 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 125389291 125389670 2500 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 125389669 125389884 1329 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 125389886 125390544 4222 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 125390547 125391040 3238 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3500"; repStart "-3720"; chrX rmsk exon 125391039 125391183 860 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "3287"; repFamily "ERV1"; repLeft "3140"; repStart "-4426"; chrX rmsk exon 125391178 125394107 16060 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 125394110 125394560 3561 - . gene_id "HERVH_Xq25b"; transcript_id "HERVH_Xq25b"; locus "HERVH_Xq25b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1285"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP3_Xq25 ### chrX rmsk gene 125432034 125440756 . - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0233"; model_cov "7193"; model_pct "80.6"; chrX rmsk exon 125432034 125432657 4187 - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0233"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 125432658 125432876 1505 - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0233"; repClass "LTR"; repEnd "8918"; repFamily "ERV1"; repLeft "8701"; repStart "-1"; chrX rmsk exon 125433503 125435291 25512 - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0233"; repClass "LTR"; repEnd "6982"; repFamily "ERV1"; repLeft "4873"; repStart "-1937"; chrX rmsk exon 125435603 125440136 25512 - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0233"; repClass "LTR"; repEnd "4872"; repFamily "ERV1"; repLeft "5"; repStart "-4047"; chrX rmsk exon 125440142 125440756 4320 - . gene_id "HUERSP3_Xq25"; transcript_id "HUERSP3_Xq25"; locus "HUERSP3_Xq25"; repName "LTR9"; geneRegion "ltr"; locid "HUERS-P3-int_0233"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_Xq25d ### chrX rmsk gene 125562146 125567747 . - . gene_id "MER61_Xq25d"; transcript_id "MER61_Xq25d"; locus "MER61_Xq25d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0419"; model_cov "5203"; model_pct "99.7"; chrX rmsk exon 125562146 125562497 1966 - . gene_id "MER61_Xq25d"; transcript_id "MER61_Xq25d"; locus "MER61_Xq25d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0419"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 125562509 125565764 26716 - . gene_id "MER61_Xq25d"; transcript_id "MER61_Xq25d"; locus "MER61_Xq25d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0419"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "1952"; repStart "-11"; chrX rmsk exon 125566072 125567410 26716 - . gene_id "MER61_Xq25d"; transcript_id "MER61_Xq25d"; locus "MER61_Xq25d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0419"; repClass "LTR"; repEnd "1951"; repFamily "ERV1"; repLeft "2"; repStart "-3266"; chrX rmsk exon 125567411 125567747 1786 - . gene_id "MER61_Xq25d"; transcript_id "MER61_Xq25d"; locus "MER61_Xq25d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0419"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq25h ### chrX rmsk gene 125636104 125641707 . - . gene_id "HERVL_Xq25h"; transcript_id "HERVL_Xq25h"; locus "HERVL_Xq25h"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1379"; model_cov "5079"; model_pct "89.8"; chrX rmsk exon 125636104 125641150 35001 - . gene_id "HERVL_Xq25h"; transcript_id "HERVL_Xq25h"; locus "HERVL_Xq25h"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1379"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "1"; repStart "-574"; chrX rmsk exon 125641151 125641707 1970 - . gene_id "HERVL_Xq25h"; transcript_id "HERVL_Xq25h"; locus "HERVL_Xq25h"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1379"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-100"; repStart "0"; ### LTR23_Xq25a ### chrX rmsk gene 125680435 125681463 . + . gene_id "LTR23_Xq25a"; transcript_id "LTR23_Xq25a"; locus "LTR23_Xq25a"; category "oneside"; intModel "LTR23-int"; locid "LTR23-int_0081"; model_cov "743"; model_pct "14.5"; chrX rmsk exon 125680435 125680859 2367 + . gene_id "LTR23_Xq25a"; transcript_id "LTR23_Xq25a"; locus "LTR23_Xq25a"; repName "LTR23"; geneRegion "ltr"; locid "LTR23-int_0081"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "-27"; chrX rmsk exon 125680860 125681463 4163 + . gene_id "LTR23_Xq25a"; transcript_id "LTR23_Xq25a"; locus "LTR23_Xq25a"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0081"; repClass "LTR"; repEnd "744"; repFamily "ERV1"; repLeft "-4379"; repStart "1"; ### LTR23_Xq25b ### chrX rmsk gene 125685250 125693643 . + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; category "oneside"; intModel "LTR23-int"; locid "LTR23-int_0082"; model_cov "4169"; model_pct "81.4"; chrX rmsk exon 125685250 125685491 2222 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "992"; repFamily "ERV1"; repLeft "-4131"; repStart "751"; chrX rmsk exon 125685556 125685592 323 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "1093"; repFamily "ERV1"; repLeft "-4030"; repStart "1057"; chrX rmsk exon 125685724 125685893 17487 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "1394"; repFamily "ERV1"; repLeft "-3729"; repStart "1225"; chrX rmsk exon 125686476 125687164 17487 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "2104"; repFamily "ERV1"; repLeft "-3019"; repStart "1395"; chrX rmsk exon 125687603 125688432 17487 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "2927"; repFamily "ERV1"; repLeft "-2196"; repStart "2105"; chrX rmsk exon 125689100 125689490 17487 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "3318"; repFamily "ERV1"; repLeft "-1805"; repStart "2928"; chrX rmsk exon 125691246 125691499 9681 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "3573"; repFamily "ERV1"; repLeft "-1550"; repStart "3320"; chrX rmsk exon 125691786 125693205 9681 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "5123"; repFamily "ERV1"; repLeft "0"; repStart "3574"; chrX rmsk exon 125693206 125693643 2154 + . gene_id "LTR23_Xq25b"; transcript_id "LTR23_Xq25b"; locus "LTR23_Xq25b"; repName "LTR23"; geneRegion "ltr"; locid "LTR23-int_0082"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq25i ### chrX rmsk gene 125726618 125727909 . - . gene_id "HERVL_Xq25i"; transcript_id "HERVL_Xq25i"; locus "HERVL_Xq25i"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1380"; model_cov "1297"; model_pct "22.9"; chrX rmsk exon 125726618 125727909 26307 - . gene_id "HERVL_Xq25i"; transcript_id "HERVL_Xq25i"; locus "HERVL_Xq25i"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1380"; repClass "LTR"; repEnd "4590"; repFamily "ERVL"; repLeft "3293"; repStart "-1064"; ### HERVL_Xq25j ### chrX rmsk gene 125727957 125731271 . - . gene_id "HERVL_Xq25j"; transcript_id "HERVL_Xq25j"; locus "HERVL_Xq25j"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1381"; model_cov "2903"; model_pct "51.3"; chrX rmsk exon 125727957 125730360 26307 - . gene_id "HERVL_Xq25j"; transcript_id "HERVL_Xq25j"; locus "HERVL_Xq25j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1381"; repClass "LTR"; repEnd "4590"; repFamily "ERVL"; repLeft "2174"; repStart "-1064"; chrX rmsk exon 125730363 125730847 3679 - . gene_id "HERVL_Xq25j"; transcript_id "HERVL_Xq25j"; locus "HERVL_Xq25j"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1381"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "1"; repStart "-5166"; chrX rmsk exon 125730848 125731271 2689 - . gene_id "HERVL_Xq25j"; transcript_id "HERVL_Xq25j"; locus "HERVL_Xq25j"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1381"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "2"; repStart "0"; ### LTR25_Xq25b ### chrX rmsk gene 125782291 125788696 . - . gene_id "LTR25_Xq25b"; transcript_id "LTR25_Xq25b"; locus "LTR25_Xq25b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0156"; model_cov "6382"; model_pct "88.8"; chrX rmsk exon 125782291 125785271 19674 - . gene_id "LTR25_Xq25b"; transcript_id "LTR25_Xq25b"; locus "LTR25_Xq25b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0156"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "4192"; repStart "-1"; chrX rmsk exon 125785730 125788696 12611 - . gene_id "LTR25_Xq25b"; transcript_id "LTR25_Xq25b"; locus "LTR25_Xq25b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0156"; repClass "LTR"; repEnd "4142"; repFamily "ERV1"; repLeft "755"; repStart "-3046"; ### LTR25_Xq25c ### chrX rmsk gene 125791629 125792416 . - . gene_id "LTR25_Xq25c"; transcript_id "LTR25_Xq25c"; locus "LTR25_Xq25c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0157"; model_cov "755"; model_pct "10.5"; chrX rmsk exon 125791629 125792319 3501 - . gene_id "LTR25_Xq25c"; transcript_id "LTR25_Xq25c"; locus "LTR25_Xq25c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0157"; repClass "LTR"; repEnd "931"; repFamily "ERV1"; repLeft "262"; repStart "-6257"; chrX rmsk exon 125792324 125792416 528 - . gene_id "LTR25_Xq25c"; transcript_id "LTR25_Xq25c"; locus "LTR25_Xq25c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0157"; repClass "LTR"; repEnd "91"; repFamily "ERV1"; repLeft "5"; repStart "-7097"; ### HERVL_Xq25k ### chrX rmsk gene 125809420 125811209 . - . gene_id "HERVL_Xq25k"; transcript_id "HERVL_Xq25k"; locus "HERVL_Xq25k"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1383"; model_cov "1292"; model_pct "22.9"; chrX rmsk exon 125809420 125809928 2428 - . gene_id "HERVL_Xq25k"; transcript_id "HERVL_Xq25k"; locus "HERVL_Xq25k"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1383"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 125809929 125810860 35738 - . gene_id "HERVL_Xq25k"; transcript_id "HERVL_Xq25k"; locus "HERVL_Xq25k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1383"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4679"; repStart "0"; chrX rmsk exon 125810906 125811209 35738 - . gene_id "HERVL_Xq25k"; transcript_id "HERVL_Xq25k"; locus "HERVL_Xq25k"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1383"; repClass "LTR"; repEnd "4678"; repFamily "ERVL"; repLeft "4361"; repStart "-976"; ### HERVL_Xq25l ### chrX rmsk gene 125811261 125815674 . - . gene_id "HERVL_Xq25l"; transcript_id "HERVL_Xq25l"; locus "HERVL_Xq25l"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1384"; model_cov "3968"; model_pct "70.2"; chrX rmsk exon 125811261 125812436 35738 - . gene_id "HERVL_Xq25l"; transcript_id "HERVL_Xq25l"; locus "HERVL_Xq25l"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1384"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4420"; repStart "0"; chrX rmsk exon 125812881 125815607 35738 - . gene_id "HERVL_Xq25l"; transcript_id "HERVL_Xq25l"; locus "HERVL_Xq25l"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1384"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "391"; repStart "-2529"; chrX rmsk exon 125815608 125815674 407 - . gene_id "HERVL_Xq25l"; transcript_id "HERVL_Xq25l"; locus "HERVL_Xq25l"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1384"; repClass "LTR"; repEnd "84"; repFamily "ERVL"; repLeft "1"; repStart "-360"; ### MER41_Xq25c ### chrX rmsk gene 125932492 125935175 . - . gene_id "MER41_Xq25c"; transcript_id "MER41_Xq25c"; locus "MER41_Xq25c"; category "internal"; intModel "MER41-int"; locid "MER41-int_0620"; model_cov "3930"; model_pct "66.1"; chrX rmsk exon 125932492 125935175 12205 - . gene_id "MER41_Xq25c"; transcript_id "MER41_Xq25c"; locus "MER41_Xq25c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0620"; repClass "LTR"; repEnd "5941"; repFamily "ERV1"; repLeft "2011"; repStart "-5"; ### HERVL_Xq25m ### chrX rmsk gene 126034943 126042975 . + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1385"; model_cov "5429"; model_pct "96.0"; chrX rmsk exon 126034943 126035383 2899 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "420"; repFamily "ERVL"; repLeft "-24"; repStart "-110"; chrX rmsk exon 126035510 126035556 261 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "1059"; repFamily "ERVL"; repLeft "-4595"; repStart "1013"; chrX rmsk exon 126035909 126039604 28106 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "3696"; repFamily "ERVL"; repLeft "-1958"; repStart "1"; chrX rmsk exon 126039619 126040157 4067 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "4511"; repFamily "ERVL"; repLeft "-1143"; repStart "3971"; chrX rmsk exon 126041411 126042552 8958 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4506"; chrX rmsk exon 126042553 126042975 2997 + . gene_id "HERVL_Xq25m"; transcript_id "HERVL_Xq25m"; locus "HERVL_Xq25m"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1385"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_Xq25n ### chrX rmsk gene 126093604 126099583 . - . gene_id "HERVL_Xq25n"; transcript_id "HERVL_Xq25n"; locus "HERVL_Xq25n"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1386"; model_cov "5070"; model_pct "89.7"; chrX rmsk exon 126093604 126094093 2771 - . gene_id "HERVL_Xq25n"; transcript_id "HERVL_Xq25n"; locus "HERVL_Xq25n"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1386"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 126094094 126097350 23722 - . gene_id "HERVL_Xq25n"; transcript_id "HERVL_Xq25n"; locus "HERVL_Xq25n"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1386"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2377"; repStart "0"; chrX rmsk exon 126097349 126099135 12911 - . gene_id "HERVL_Xq25n"; transcript_id "HERVL_Xq25n"; locus "HERVL_Xq25n"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1386"; repClass "LTR"; repEnd "1794"; repFamily "ERVL"; repLeft "1"; repStart "-3860"; chrX rmsk exon 126099136 126099583 2895 - . gene_id "HERVL_Xq25n"; transcript_id "HERVL_Xq25n"; locus "HERVL_Xq25n"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1386"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL_Xq25o ### chrX rmsk gene 126226684 126229175 . + . gene_id "HERVL_Xq25o"; transcript_id "HERVL_Xq25o"; locus "HERVL_Xq25o"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1387"; model_cov "2009"; model_pct "35.5"; chrX rmsk exon 126226684 126228720 15218 + . gene_id "HERVL_Xq25o"; transcript_id "HERVL_Xq25o"; locus "HERVL_Xq25o"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1387"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3645"; chrX rmsk exon 126228722 126229175 3202 + . gene_id "HERVL_Xq25o"; transcript_id "HERVL_Xq25o"; locus "HERVL_Xq25o"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1387"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### HERVL_Xq25p ### chrX rmsk gene 126295798 126299710 . - . gene_id "HERVL_Xq25p"; transcript_id "HERVL_Xq25p"; locus "HERVL_Xq25p"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1388"; model_cov "3073"; model_pct "54.4"; chrX rmsk exon 126295798 126295850 353 - . gene_id "HERVL_Xq25p"; transcript_id "HERVL_Xq25p"; locus "HERVL_Xq25p"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1388"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "392"; repStart "0"; chrX rmsk exon 126295853 126298917 23476 - . gene_id "HERVL_Xq25p"; transcript_id "HERVL_Xq25p"; locus "HERVL_Xq25p"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1388"; repClass "LTR"; repEnd "3074"; repFamily "ERVL"; repLeft "1"; repStart "-2580"; chrX rmsk exon 126298918 126299280 2932 - . gene_id "HERVL_Xq25p"; transcript_id "HERVL_Xq25p"; locus "HERVL_Xq25p"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1388"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "123"; repStart "0"; chrX rmsk exon 126299585 126299710 2932 - . gene_id "HERVL_Xq25p"; transcript_id "HERVL_Xq25p"; locus "HERVL_Xq25p"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1388"; repClass "LTR"; repEnd "122"; repFamily "ERVL"; repLeft "1"; repStart "-322"; ### MER4B_Xq25a ### chrX rmsk gene 126513279 126514231 . - . gene_id "MER4B_Xq25a"; transcript_id "MER4B_Xq25a"; locus "MER4B_Xq25a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0542"; model_cov "947"; model_pct "14.0"; chrX rmsk exon 126513279 126514231 3245 - . gene_id "MER4B_Xq25a"; transcript_id "MER4B_Xq25a"; locus "MER4B_Xq25a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0542"; repClass "LTR"; repEnd "4693"; repFamily "ERV1"; repLeft "3746"; repStart "-2065"; ### MER34B_Xq25 ### chrX rmsk gene 126791598 126793228 . + . gene_id "MER34B_Xq25"; transcript_id "MER34B_Xq25"; locus "MER34B_Xq25"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0291"; model_cov "756"; model_pct "14.1"; chrX rmsk exon 126791598 126792093 1790 + . gene_id "MER34B_Xq25"; transcript_id "MER34B_Xq25"; locus "MER34B_Xq25"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0291"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "0"; repStart "27"; chrX rmsk exon 126792376 126792641 502 + . gene_id "MER34B_Xq25"; transcript_id "MER34B_Xq25"; locus "MER34B_Xq25"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0291"; repClass "LTR"; repEnd "-403"; repFamily "ERV1"; repLeft "-5759"; repStart "-680"; chrX rmsk exon 126792648 126792861 525 + . gene_id "MER34B_Xq25"; transcript_id "MER34B_Xq25"; locus "MER34B_Xq25"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0291"; repClass "LTR"; repEnd "-1750"; repFamily "ERV1"; repLeft "-7106"; repStart "-1970"; chrX rmsk exon 126792985 126793228 528 + . gene_id "MER34B_Xq25"; transcript_id "MER34B_Xq25"; locus "MER34B_Xq25"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0291"; repClass "LTR"; repEnd "1859"; repFamily "ERV1"; repLeft "-3497"; repStart "1600"; ### HERVH_Xq25c ### chrX rmsk gene 126863047 126868992 . + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1286"; model_cov "5113"; model_pct "66.3"; chrX rmsk exon 126863047 126863509 2954 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 126863512 126866511 19719 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "-4718"; repStart "1"; chrX rmsk exon 126866491 126867324 5482 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chrX rmsk exon 126867327 126867984 4389 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chrX rmsk exon 126867989 126868204 1292 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 126868205 126868580 2363 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 126868581 126868992 2805 + . gene_id "HERVH_Xq25c"; transcript_id "HERVH_Xq25c"; locus "HERVH_Xq25c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1286"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVL_Xq25q ### chrX rmsk gene 126938842 126945509 . - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_1389"; model_cov "5510"; model_pct "97.5"; chrX rmsk exon 126938842 126939234 2598 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "3"; repStart "-40"; chrX rmsk exon 126939237 126940501 9685 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4379"; repStart "0"; chrX rmsk exon 126940496 126940921 3393 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "4251"; repFamily "ERVL"; repLeft "3826"; repStart "-1403"; chrX rmsk exon 126940923 126944639 28993 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "3720"; repFamily "ERVL"; repLeft "1"; repStart "-1934"; chrX rmsk exon 126944640 126944719 239 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chrX rmsk exon 126944736 126944827 641 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "1100"; repFamily "ERVL"; repLeft "1009"; repStart "-4554"; chrX rmsk exon 126945132 126945509 2796 - . gene_id "HERVL_Xq25q"; transcript_id "HERVL_Xq25q"; locus "HERVL_Xq25q"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1389"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### MER61_Xq25e ### chrX rmsk gene 126965849 126969142 . + . gene_id "MER61_Xq25e"; transcript_id "MER61_Xq25e"; locus "MER61_Xq25e"; category "internal"; intModel "MER61-int"; locid "MER61-int_0420"; model_cov "3366"; model_pct "64.5"; chrX rmsk exon 126965849 126969142 19213 + . gene_id "MER61_Xq25e"; transcript_id "MER61_Xq25e"; locus "MER61_Xq25e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0420"; repClass "LTR"; repEnd "3375"; repFamily "ERV1"; repLeft "-1842"; repStart "9"; ### PABLA_Xq25 ### chrX rmsk gene 126985454 126991991 . + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0169"; model_cov "5012"; model_pct "99.9"; chrX rmsk exon 126985454 126986077 4269 + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0169"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 126986078 126987723 31938 + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0169"; repClass "LTR"; repEnd "1769"; repFamily "ERV1"; repLeft "-3246"; repStart "1"; chrX rmsk exon 126987932 126989647 31938 + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0169"; repClass "LTR"; repEnd "3616"; repFamily "ERV1"; repLeft "-1399"; repStart "1770"; chrX rmsk exon 126989957 126991347 31938 + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0169"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "3617"; chrX rmsk exon 126991348 126991991 4194 + . gene_id "PABLA_Xq25"; transcript_id "PABLA_Xq25"; locus "PABLA_Xq25"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0169"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Xq25b ### chrX rmsk gene 127136905 127139785 . + . gene_id "MER4B_Xq25b"; transcript_id "MER4B_Xq25b"; locus "MER4B_Xq25b"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0543"; model_cov "3179"; model_pct "47.0"; chrX rmsk exon 127136905 127138624 7498 + . gene_id "MER4B_Xq25b"; transcript_id "MER4B_Xq25b"; locus "MER4B_Xq25b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0543"; repClass "LTR"; repEnd "4222"; repFamily "ERV1"; repLeft "-2536"; repStart "1310"; chrX rmsk exon 127139520 127139785 1138 + . gene_id "MER4B_Xq25b"; transcript_id "MER4B_Xq25b"; locus "MER4B_Xq25b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0543"; repClass "LTR"; repEnd "5279"; repFamily "ERV1"; repLeft "-1479"; repStart "5012"; ### HERVL_Xq25r ### chrX rmsk gene 127207136 127208793 . - . gene_id "HERVL_Xq25r"; transcript_id "HERVL_Xq25r"; locus "HERVL_Xq25r"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1391"; model_cov "1140"; model_pct "20.2"; chrX rmsk exon 127207136 127208274 7698 - . gene_id "HERVL_Xq25r"; transcript_id "HERVL_Xq25r"; locus "HERVL_Xq25r"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1391"; repClass "LTR"; repEnd "1141"; repFamily "ERVL"; repLeft "1"; repStart "-4513"; chrX rmsk exon 127208275 127208793 2340 - . gene_id "HERVL_Xq25r"; transcript_id "HERVL_Xq25r"; locus "HERVL_Xq25r"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1391"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_Xq25d ### chrX rmsk gene 127228073 127232994 . + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1287"; model_cov "4495"; model_pct "58.3"; chrX rmsk exon 127228073 127230000 12395 + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1287"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "-4721"; repStart "1114"; chrX rmsk exon 127229987 127232038 7796 + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1287"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3140"; chrX rmsk exon 127232040 127232259 1469 + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1287"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 127232260 127232629 2235 + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1287"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 127232630 127232994 1991 + . gene_id "HERVH_Xq25d"; transcript_id "HERVH_Xq25d"; locus "HERVH_Xq25d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1287"; repClass "LTR"; repEnd "417"; repFamily "ERV1"; repLeft "-33"; repStart "1"; ### ERVL_Xq25a ### chrX rmsk gene 127241952 127243655 . + . gene_id "ERVL_Xq25a"; transcript_id "ERVL_Xq25a"; locus "ERVL_Xq25a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0495"; model_cov "1623"; model_pct "28.2"; chrX rmsk exon 127241952 127243524 8569 + . gene_id "ERVL_Xq25a"; transcript_id "ERVL_Xq25a"; locus "ERVL_Xq25a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0495"; repClass "LTR"; repEnd "5754"; repFamily "ERVL"; repLeft "-3"; repStart "4131"; chrX rmsk exon 127243531 127243655 776 + . gene_id "ERVL_Xq25a"; transcript_id "ERVL_Xq25a"; locus "ERVL_Xq25a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0495"; repClass "LTR"; repEnd "130"; repFamily "ERVL"; repLeft "-426"; repStart "1"; ### ERVLB4_Xq25a ### chrX rmsk gene 127285483 127291163 . - . gene_id "ERVLB4_Xq25a"; transcript_id "ERVLB4_Xq25a"; locus "ERVLB4_Xq25a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1883"; model_cov "5130"; model_pct "89.8"; chrX rmsk exon 127285483 127286915 6545 - . gene_id "ERVLB4_Xq25a"; transcript_id "ERVLB4_Xq25a"; locus "ERVLB4_Xq25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1883"; repClass "LTR"; repEnd "5484"; repFamily "ERVL"; repLeft "4026"; repStart "-230"; chrX rmsk exon 127286928 127289966 10628 - . gene_id "ERVLB4_Xq25a"; transcript_id "ERVLB4_Xq25a"; locus "ERVLB4_Xq25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1883"; repClass "LTR"; repEnd "3816"; repFamily "ERVL"; repLeft "614"; repStart "-1898"; chrX rmsk exon 127290130 127290608 1027 - . gene_id "ERVLB4_Xq25a"; transcript_id "ERVLB4_Xq25a"; locus "ERVLB4_Xq25a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1883"; repClass "LTR"; repEnd "428"; repFamily "ERVL"; repLeft "-42"; repStart "-5286"; chrX rmsk exon 127290804 127291163 1640 - . gene_id "ERVLB4_Xq25a"; transcript_id "ERVLB4_Xq25a"; locus "ERVLB4_Xq25a"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1883"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "1"; repStart "-45"; ### HERV9_Xq25 ### chrX rmsk gene 127394637 127402755 . + . gene_id "HERV9_Xq25"; transcript_id "HERV9_Xq25"; locus "HERV9_Xq25"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0193"; model_cov "7319"; model_pct "86.8"; chrX rmsk exon 127394637 127395503 6164 + . gene_id "HERV9_Xq25"; transcript_id "HERV9_Xq25"; locus "HERV9_Xq25"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0193"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 127395504 127401999 53827 + . gene_id "HERV9_Xq25"; transcript_id "HERV9_Xq25"; locus "HERV9_Xq25"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0193"; repClass "LTR"; repEnd "6547"; repFamily "ERV1"; repLeft "-1889"; repStart "1"; chrX rmsk exon 127401988 127402755 6097 + . gene_id "HERV9_Xq25"; transcript_id "HERV9_Xq25"; locus "HERV9_Xq25"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0193"; repClass "LTR"; repEnd "7461"; repFamily "ERV1"; repLeft "-975"; repStart "6688"; ### ERVL_Xq25b ### chrX rmsk gene 127509820 127513266 . + . gene_id "ERVL_Xq25b"; transcript_id "ERVL_Xq25b"; locus "ERVL_Xq25b"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0496"; model_cov "2509"; model_pct "43.6"; chrX rmsk exon 127509820 127510113 1603 + . gene_id "ERVL_Xq25b"; transcript_id "ERVL_Xq25b"; locus "ERVL_Xq25b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0496"; repClass "LTR"; repEnd "292"; repFamily "ERVL"; repLeft "-262"; repStart "1"; chrX rmsk exon 127510114 127511093 5491 + . gene_id "ERVL_Xq25b"; transcript_id "ERVL_Xq25b"; locus "ERVL_Xq25b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0496"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "-1693"; repStart "3069"; chrX rmsk exon 127511202 127512699 8642 + . gene_id "ERVL_Xq25b"; transcript_id "ERVL_Xq25b"; locus "ERVL_Xq25b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0496"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4243"; chrX rmsk exon 127512700 127513266 2861 + . gene_id "ERVL_Xq25b"; transcript_id "ERVL_Xq25b"; locus "ERVL_Xq25b"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-int_0496"; repClass "LTR"; repEnd "552"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL_Xq25s ### chrX rmsk gene 127604795 127606102 . + . gene_id "HERVL_Xq25s"; transcript_id "HERVL_Xq25s"; locus "HERVL_Xq25s"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1392"; model_cov "828"; model_pct "14.6"; chrX rmsk exon 127604795 127605166 2630 + . gene_id "HERVL_Xq25s"; transcript_id "HERVL_Xq25s"; locus "HERVL_Xq25s"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1392"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "-54"; repStart "3"; chrX rmsk exon 127605222 127605285 2630 + . gene_id "HERVL_Xq25s"; transcript_id "HERVL_Xq25s"; locus "HERVL_Xq25s"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1392"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "391"; chrX rmsk exon 127605286 127606102 6265 + . gene_id "HERVL_Xq25s"; transcript_id "HERVL_Xq25s"; locus "HERVL_Xq25s"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1392"; repClass "LTR"; repEnd "829"; repFamily "ERVL"; repLeft "-4825"; repStart "1"; ### ERVL_Xq25c ### chrX rmsk gene 127670428 127676734 . + . gene_id "ERVL_Xq25c"; transcript_id "ERVL_Xq25c"; locus "ERVL_Xq25c"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0497"; model_cov "5567"; model_pct "96.7"; chrX rmsk exon 127670428 127675041 25495 + . gene_id "ERVL_Xq25c"; transcript_id "ERVL_Xq25c"; locus "ERVL_Xq25c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0497"; repClass "LTR"; repEnd "4965"; repFamily "ERVL"; repLeft "-792"; repStart "189"; chrX rmsk exon 127675777 127676573 25495 + . gene_id "ERVL_Xq25c"; transcript_id "ERVL_Xq25c"; locus "ERVL_Xq25c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0497"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4966"; chrX rmsk exon 127676574 127676734 903 + . gene_id "ERVL_Xq25c"; transcript_id "ERVL_Xq25c"; locus "ERVL_Xq25c"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-int_0497"; repClass "LTR"; repEnd "165"; repFamily "ERVL"; repLeft "-391"; repStart "1"; ### HERVL_Xq25t ### chrX rmsk gene 127705912 127708083 . + . gene_id "HERVL_Xq25t"; transcript_id "HERVL_Xq25t"; locus "HERVL_Xq25t"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1393"; model_cov "2092"; model_pct "37.0"; chrX rmsk exon 127705912 127705985 383 + . gene_id "HERVL_Xq25t"; transcript_id "HERVL_Xq25t"; locus "HERVL_Xq25t"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1393"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-2"; repStart "375"; chrX rmsk exon 127705988 127707048 6941 + . gene_id "HERVL_Xq25t"; transcript_id "HERVL_Xq25t"; locus "HERVL_Xq25t"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1393"; repClass "LTR"; repEnd "1055"; repFamily "ERVL"; repLeft "-4599"; repStart "1"; chrX rmsk exon 127707045 127708083 7424 + . gene_id "HERVL_Xq25t"; transcript_id "HERVL_Xq25t"; locus "HERVL_Xq25t"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1393"; repClass "LTR"; repEnd "4896"; repFamily "ERVL"; repLeft "-758"; repStart "3858"; ### ERVLB4_Xq25b ### chrX rmsk gene 127755272 127756783 . + . gene_id "ERVLB4_Xq25b"; transcript_id "ERVLB4_Xq25b"; locus "ERVLB4_Xq25b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1884"; model_cov "829"; model_pct "14.5"; chrX rmsk exon 127755272 127756109 4004 + . gene_id "ERVLB4_Xq25b"; transcript_id "ERVLB4_Xq25b"; locus "ERVLB4_Xq25b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1884"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4885"; chrX rmsk exon 127756110 127756213 1390 + . gene_id "ERVLB4_Xq25b"; transcript_id "ERVLB4_Xq25b"; locus "ERVLB4_Xq25b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1884"; repClass "LTR"; repEnd "98"; repFamily "ERVL"; repLeft "-458"; repStart "1"; chrX rmsk exon 127756513 127756783 1390 + . gene_id "ERVLB4_Xq25b"; transcript_id "ERVLB4_Xq25b"; locus "ERVLB4_Xq25b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1884"; repClass "LTR"; repEnd "481"; repFamily "ERVL"; repLeft "-75"; repStart "99"; ### HERVL74_Xq25 ### chrX rmsk gene 127885634 127888607 . - . gene_id "HERVL74_Xq25"; transcript_id "HERVL74_Xq25"; locus "HERVL74_Xq25"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0147"; model_cov "2986"; model_pct "52.5"; chrX rmsk exon 127885634 127886198 1750 - . gene_id "HERVL74_Xq25"; transcript_id "HERVL74_Xq25"; locus "HERVL74_Xq25"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0147"; repClass "LTR"; repEnd "5141"; repFamily "ERVL"; repLeft "4586"; repStart "-544"; chrX rmsk exon 127886187 127886348 827 - . gene_id "HERVL74_Xq25"; transcript_id "HERVL74_Xq25"; locus "HERVL74_Xq25"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0147"; repClass "LTR"; repEnd "4073"; repFamily "ERVL"; repLeft "3910"; repStart "-1612"; chrX rmsk exon 127886437 127888607 5390 - . gene_id "HERVL74_Xq25"; transcript_id "HERVL74_Xq25"; locus "HERVL74_Xq25"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0147"; repClass "LTR"; repEnd "3343"; repFamily "ERVL"; repLeft "1075"; repStart "-2342"; ### ERVLB4_Xq25c ### chrX rmsk gene 127895304 127897547 . + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1885"; model_cov "1770"; model_pct "31.0"; chrX rmsk exon 127895304 127895655 867 + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1885"; repClass "LTR"; repEnd "373"; repFamily "ERVL"; repLeft "-41"; repStart "1"; chrX rmsk exon 127895749 127896362 2685 + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1885"; repClass "LTR"; repEnd "643"; repFamily "ERVL"; repLeft "-5071"; repStart "22"; chrX rmsk exon 127896354 127896794 2318 + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1885"; repClass "LTR"; repEnd "1775"; repFamily "ERVL"; repLeft "-3939"; repStart "1338"; chrX rmsk exon 127896837 127897254 2112 + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1885"; repClass "LTR"; repEnd "2202"; repFamily "ERVL"; repLeft "-3512"; repStart "1784"; chrX rmsk exon 127897262 127897547 1332 + . gene_id "ERVLB4_Xq25c"; transcript_id "ERVLB4_Xq25c"; locus "ERVLB4_Xq25c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1885"; repClass "LTR"; repEnd "2657"; repFamily "ERVL"; repLeft "-3057"; repStart "2363"; ### HERVFRD_Xq25 ### chrX rmsk gene 127900038 127901502 . + . gene_id "HERVFRD_Xq25"; transcript_id "HERVFRD_Xq25"; locus "HERVFRD_Xq25"; category "internal"; intModel "MER50-int"; locid "MER50-int_0218"; model_cov "1502"; model_pct "20.8"; chrX rmsk exon 127900038 127901502 5366 + . gene_id "HERVFRD_Xq25"; transcript_id "HERVFRD_Xq25"; locus "HERVFRD_Xq25"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0218"; repClass "LTR"; repEnd "1832"; repFamily "ERV1"; repLeft "-5373"; repStart "330"; ### HERVL_Xq25u ### chrX rmsk gene 127935719 127939710 . - . gene_id "HERVL_Xq25u"; transcript_id "HERVL_Xq25u"; locus "HERVL_Xq25u"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1394"; model_cov "2879"; model_pct "50.9"; chrX rmsk exon 127935719 127935967 622 - . gene_id "HERVL_Xq25u"; transcript_id "HERVL_Xq25u"; locus "HERVL_Xq25u"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1394"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "215"; repStart "-66"; chrX rmsk exon 127935968 127938359 20385 - . gene_id "HERVL_Xq25u"; transcript_id "HERVL_Xq25u"; locus "HERVL_Xq25u"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1394"; repClass "LTR"; repEnd "2881"; repFamily "ERVL"; repLeft "518"; repStart "-2773"; chrX rmsk exon 127938665 127939181 20385 - . gene_id "HERVL_Xq25u"; transcript_id "HERVL_Xq25u"; locus "HERVL_Xq25u"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1394"; repClass "LTR"; repEnd "517"; repFamily "ERVL"; repLeft "1"; repStart "-5137"; chrX rmsk exon 127939184 127939710 2546 - . gene_id "HERVL_Xq25u"; transcript_id "HERVL_Xq25u"; locus "HERVL_Xq25u"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1394"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "5"; repStart "-2"; ### LTR57_Xq25 ### chrX rmsk gene 127974606 127976996 . + . gene_id "LTR57_Xq25"; transcript_id "LTR57_Xq25"; locus "LTR57_Xq25"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0201"; model_cov "2018"; model_pct "37.8"; chrX rmsk exon 127974606 127975228 3070 + . gene_id "LTR57_Xq25"; transcript_id "LTR57_Xq25"; locus "LTR57_Xq25"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0201"; repClass "LTR"; repEnd "3789"; repFamily "ERVL"; repLeft "-1554"; repStart "3150"; chrX rmsk exon 127975228 127976596 8953 + . gene_id "LTR57_Xq25"; transcript_id "LTR57_Xq25"; locus "LTR57_Xq25"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0201"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "3964"; chrX rmsk exon 127976597 127976996 2530 + . gene_id "LTR57_Xq25"; transcript_id "LTR57_Xq25"; locus "LTR57_Xq25"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0201"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### MER4_Xq25c ### chrX rmsk gene 128078431 128085763 . - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0929"; model_cov "6595"; model_pct "100.0"; chrX rmsk exon 128078431 128078896 2841 - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0929"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 128078900 128079941 16060 - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0929"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5526"; repStart "0"; chrX rmsk exon 128080251 128084418 16060 - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0929"; repClass "LTR"; repEnd "5525"; repFamily "ERV1"; repLeft "1014"; repStart "-1073"; chrX rmsk exon 128084458 128085447 4033 - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0929"; repClass "LTR"; repEnd "1013"; repFamily "ERV1"; repLeft "1"; repStart "-5585"; chrX rmsk exon 128085451 128085763 1996 - . gene_id "MER4_Xq25c"; transcript_id "MER4_Xq25c"; locus "MER4_Xq25c"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_0929"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "153"; repStart "0"; ### MER4_Xq25d ### chrX rmsk gene 128114060 128118709 . - . gene_id "MER4_Xq25d"; transcript_id "MER4_Xq25d"; locus "MER4_Xq25d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0930"; model_cov "3519"; model_pct "53.3"; chrX rmsk exon 128114060 128114499 2833 - . gene_id "MER4_Xq25d"; transcript_id "MER4_Xq25d"; locus "MER4_Xq25d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0930"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 128114838 128116684 15138 - . gene_id "MER4_Xq25d"; transcript_id "MER4_Xq25d"; locus "MER4_Xq25d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0930"; repClass "LTR"; repEnd "6597"; repFamily "ERV1"; repLeft "4682"; repStart "-1"; chrX rmsk exon 128117045 128117360 15138 - . gene_id "MER4_Xq25d"; transcript_id "MER4_Xq25d"; locus "MER4_Xq25d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0930"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4356"; repStart "-1917"; chrX rmsk exon 128117721 128118709 15138 - . gene_id "MER4_Xq25d"; transcript_id "MER4_Xq25d"; locus "MER4_Xq25d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0930"; repClass "LTR"; repEnd "4355"; repFamily "ERV1"; repLeft "3076"; repStart "-2243"; ### MER4_Xq25e ### chrX rmsk gene 128118931 128121753 . - . gene_id "MER4_Xq25e"; transcript_id "MER4_Xq25e"; locus "MER4_Xq25e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0931"; model_cov "3072"; model_pct "46.6"; chrX rmsk exon 128118931 128121301 15138 - . gene_id "MER4_Xq25e"; transcript_id "MER4_Xq25e"; locus "MER4_Xq25e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0931"; repClass "LTR"; repEnd "4355"; repFamily "ERV1"; repLeft "1283"; repStart "-2243"; chrX rmsk exon 128121307 128121753 3086 - . gene_id "MER4_Xq25e"; transcript_id "MER4_Xq25e"; locus "MER4_Xq25e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0931"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Xq25c ### chrX rmsk gene 128140917 128141802 . - . gene_id "MER4B_Xq25c"; transcript_id "MER4B_Xq25c"; locus "MER4B_Xq25c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0544"; model_cov "892"; model_pct "13.2"; chrX rmsk exon 128140917 128141802 4656 - . gene_id "MER4B_Xq25c"; transcript_id "MER4B_Xq25c"; locus "MER4B_Xq25c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0544"; repClass "LTR"; repEnd "1081"; repFamily "ERV1"; repLeft "189"; repStart "-5677"; ### MER4_Xq25f ### chrX rmsk gene 128141802 128142883 . - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; category "internal"; intModel "MER4-int"; locid "MER4-int_0932"; model_cov "987"; model_pct "15.0"; chrX rmsk exon 128141802 128141986 1176 - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0932"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2291"; repStart "-4107"; chrX rmsk exon 128142051 128142211 1176 - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0932"; repClass "LTR"; repEnd "2290"; repFamily "ERV1"; repLeft "2122"; repStart "-4308"; chrX rmsk exon 128142292 128142370 385 - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0932"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-721"; repStart "-7241"; chrX rmsk exon 128142359 128142428 318 - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0932"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "614"; repStart "-5912"; chrX rmsk exon 128142403 128142883 1881 - . gene_id "MER4_Xq25f"; transcript_id "MER4_Xq25f"; locus "MER4_Xq25f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0932"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "94"; repStart "-6035"; ### ERV316A3_Xq25d ### chrX rmsk gene 128165831 128171487 . + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2824"; model_cov "4327"; model_pct "82.8"; chrX rmsk exon 128165831 128166269 1127 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-8"; repStart "1"; chrX rmsk exon 128166408 128167073 1450 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "1058"; repFamily "ERVL"; repLeft "-4168"; repStart "367"; chrX rmsk exon 128167073 128168194 1584 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "-3114"; repStart "986"; chrX rmsk exon 128168511 128169822 5478 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "3453"; repFamily "ERVL"; repLeft "-1773"; repStart "2145"; chrX rmsk exon 128170180 128170355 5478 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "3631"; repFamily "ERVL"; repLeft "-1595"; repStart "3454"; chrX rmsk exon 128170454 128171487 5478 + . gene_id "ERV316A3_Xq25d"; transcript_id "ERV316A3_Xq25d"; locus "ERV316A3_Xq25d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2824"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "-569"; repStart "3632"; ### HERVH_Xq25e ### chrX rmsk gene 128262787 128264251 . - . gene_id "HERVH_Xq25e"; transcript_id "HERVH_Xq25e"; locus "HERVH_Xq25e"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1288"; model_cov "1200"; model_pct "15.6"; chrX rmsk exon 128262787 128263110 1674 - . gene_id "HERVH_Xq25e"; transcript_id "HERVH_Xq25e"; locus "HERVH_Xq25e"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1288"; repClass "LTR"; repEnd "412"; repFamily "ERV1"; repLeft "1"; repStart "-38"; chrX rmsk exon 128263111 128263485 2328 - . gene_id "HERVH_Xq25e"; transcript_id "HERVH_Xq25e"; locus "HERVH_Xq25e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1288"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chrX rmsk exon 128263486 128263705 1495 - . gene_id "HERVH_Xq25e"; transcript_id "HERVH_Xq25e"; locus "HERVH_Xq25e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1288"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 128263707 128264251 2603 - . gene_id "HERVH_Xq25e"; transcript_id "HERVH_Xq25e"; locus "HERVH_Xq25e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1288"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4557"; repStart "-2564"; ### ERVLB4_Xq25d ### chrX rmsk gene 128277050 128278477 . + . gene_id "ERVLB4_Xq25d"; transcript_id "ERVLB4_Xq25d"; locus "ERVLB4_Xq25d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1887"; model_cov "1014"; model_pct "17.7"; chrX rmsk exon 128277050 128277495 1693 + . gene_id "ERVLB4_Xq25d"; transcript_id "ERVLB4_Xq25d"; locus "ERVLB4_Xq25d"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1887"; repClass "LTR"; repEnd "468"; repFamily "ERVL"; repLeft "-88"; repStart "1"; chrX rmsk exon 128277511 128278477 5116 + . gene_id "ERVLB4_Xq25d"; transcript_id "ERVLB4_Xq25d"; locus "ERVLB4_Xq25d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1887"; repClass "LTR"; repEnd "1073"; repFamily "ERVL"; repLeft "-4641"; repStart "59"; ### HERVL_Xq25v ### chrX rmsk gene 128415582 128422216 . + . gene_id "HERVL_Xq25v"; transcript_id "HERVL_Xq25v"; locus "HERVL_Xq25v"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1395"; model_cov "5626"; model_pct "99.5"; chrX rmsk exon 128415582 128415980 2817 + . gene_id "HERVL_Xq25v"; transcript_id "HERVL_Xq25v"; locus "HERVL_Xq25v"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1395"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-35"; repStart "1"; chrX rmsk exon 128416039 128416092 241 + . gene_id "HERVL_Xq25v"; transcript_id "HERVL_Xq25v"; locus "HERVL_Xq25v"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1395"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-4"; repStart "390"; chrX rmsk exon 128416093 128421742 43704 + . gene_id "HERVL_Xq25v"; transcript_id "HERVL_Xq25v"; locus "HERVL_Xq25v"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1395"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "28"; chrX rmsk exon 128421743 128422216 2804 + . gene_id "HERVL_Xq25v"; transcript_id "HERVL_Xq25v"; locus "HERVL_Xq25v"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1395"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER41_Xq26.1 ### chrX rmsk gene 129872871 129875304 . + . gene_id "MER41_Xq26.1"; transcript_id "MER41_Xq26.1"; locus "MER41_Xq26.1"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0622"; model_cov "976"; model_pct "16.4"; chrX rmsk exon 129872871 129873062 6767 + . gene_id "MER41_Xq26.1"; transcript_id "MER41_Xq26.1"; locus "MER41_Xq26.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0622"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-800"; repStart "4943"; chrX rmsk exon 129873361 129873438 6767 + . gene_id "MER41_Xq26.1"; transcript_id "MER41_Xq26.1"; locus "MER41_Xq26.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0622"; repClass "LTR"; repEnd "5219"; repFamily "ERV1"; repLeft "-727"; repStart "5147"; chrX rmsk exon 129873692 129874395 6767 + . gene_id "MER41_Xq26.1"; transcript_id "MER41_Xq26.1"; locus "MER41_Xq26.1"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0622"; repClass "LTR"; repEnd "5921"; repFamily "ERV1"; repLeft "-25"; repStart "5220"; chrX rmsk exon 129874762 129875304 4093 + . gene_id "MER41_Xq26.1"; transcript_id "MER41_Xq26.1"; locus "MER41_Xq26.1"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0622"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HERVH_Xq26.1 ### chrX rmsk gene 130277374 130280192 . + . gene_id "HERVH_Xq26.1"; transcript_id "HERVH_Xq26.1"; locus "HERVH_Xq26.1"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1289"; model_cov "2390"; model_pct "31.0"; chrX rmsk exon 130277374 130277735 2177 + . gene_id "HERVH_Xq26.1"; transcript_id "HERVH_Xq26.1"; locus "HERVH_Xq26.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1289"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 130277736 130279420 7567 + . gene_id "HERVH_Xq26.1"; transcript_id "HERVH_Xq26.1"; locus "HERVH_Xq26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1289"; repClass "LTR"; repEnd "1979"; repFamily "ERV1"; repLeft "-5734"; repStart "1"; chrX rmsk exon 130279413 130279827 2605 + . gene_id "HERVH_Xq26.1"; transcript_id "HERVH_Xq26.1"; locus "HERVH_Xq26.1"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1289"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7301"; chrX rmsk exon 130279828 130280192 2267 + . gene_id "HERVH_Xq26.1"; transcript_id "HERVH_Xq26.1"; locus "HERVH_Xq26.1"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1289"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV4_Xq26.1 ### chrX rmsk gene 130280193 130287888 . + . gene_id "HERV4_Xq26.1"; transcript_id "HERV4_Xq26.1"; locus "HERV4_Xq26.1"; category "prototype"; intModel "HERV4_I-int"; locid "HERV4_I-int_0150"; model_cov "6537"; model_pct "100.0"; chrX rmsk exon 130280193 130280508 1665 + . gene_id "HERV4_Xq26.1"; transcript_id "HERV4_Xq26.1"; locus "HERV4_Xq26.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0150"; repClass "LTR"; repEnd "625"; repFamily "ERV1"; repLeft "-9"; repStart "282"; chrX rmsk exon 130280532 130283685 45547 + . gene_id "HERV4_Xq26.1"; transcript_id "HERV4_Xq26.1"; locus "HERV4_Xq26.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0150"; repClass "LTR"; repEnd "3108"; repFamily "ERV1"; repLeft "-3431"; repStart "1"; chrX rmsk exon 130283975 130287373 45547 + . gene_id "HERV4_Xq26.1"; transcript_id "HERV4_Xq26.1"; locus "HERV4_Xq26.1"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0150"; repClass "LTR"; repEnd "6539"; repFamily "ERV1"; repLeft "0"; repStart "3109"; chrX rmsk exon 130287374 130287888 2546 + . gene_id "HERV4_Xq26.1"; transcript_id "HERV4_Xq26.1"; locus "HERV4_Xq26.1"; repName "MER51A"; geneRegion "ltr"; locid "HERV4_I-int_0150"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERV316A3_Xq26.1 ### chrX rmsk gene 130414503 130417761 . - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2825"; model_cov "2326"; model_pct "44.5"; chrX rmsk exon 130414503 130414714 738 - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2825"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "186"; repStart "-41"; chrX rmsk exon 130414715 130414866 526 - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2825"; repClass "LTR"; repEnd "3996"; repFamily "ERVL"; repLeft "3831"; repStart "-1230"; chrX rmsk exon 130415455 130415555 452 - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2825"; repClass "LTR"; repEnd "2111"; repFamily "ERVL"; repLeft "2013"; repStart "-3115"; chrX rmsk exon 130415557 130417567 5518 - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2825"; repClass "LTR"; repEnd "2066"; repFamily "ERVL"; repLeft "3"; repStart "-3160"; chrX rmsk exon 130417568 130417761 957 - . gene_id "ERV316A3_Xq26.1"; transcript_id "ERV316A3_Xq26.1"; locus "ERV316A3_Xq26.1"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2825"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "251"; repStart "-2"; ### ERVLE_Xq26.1 ### chrX rmsk gene 131164905 131169303 . + . gene_id "ERVLE_Xq26.1"; transcript_id "ERVLE_Xq26.1"; locus "ERVLE_Xq26.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3724"; model_cov "4413"; model_pct "77.9"; chrX rmsk exon 131164905 131167237 4118 + . gene_id "ERVLE_Xq26.1"; transcript_id "ERVLE_Xq26.1"; locus "ERVLE_Xq26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3724"; repClass "LTR"; repEnd "2826"; repFamily "ERVL"; repLeft "-2841"; repStart "459"; chrX rmsk exon 131167286 131168008 4118 + . gene_id "ERVLE_Xq26.1"; transcript_id "ERVLE_Xq26.1"; locus "ERVLE_Xq26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3724"; repClass "LTR"; repEnd "3561"; repFamily "ERVL"; repLeft "-2106"; repStart "2827"; chrX rmsk exon 131167998 131169303 2346 + . gene_id "ERVLE_Xq26.1"; transcript_id "ERVLE_Xq26.1"; locus "ERVLE_Xq26.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3724"; repClass "LTR"; repEnd "5238"; repFamily "ERVL"; repLeft "-429"; repStart "3926"; ### ERVLE_Xq26.2a ### chrX rmsk gene 131660939 131663952 . + . gene_id "ERVLE_Xq26.2a"; transcript_id "ERVLE_Xq26.2a"; locus "ERVLE_Xq26.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3725"; model_cov "2219"; model_pct "39.2"; chrX rmsk exon 131660939 131661755 1076 + . gene_id "ERVLE_Xq26.2a"; transcript_id "ERVLE_Xq26.2a"; locus "ERVLE_Xq26.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3725"; repClass "LTR"; repEnd "1878"; repFamily "ERVL"; repLeft "-3789"; repStart "993"; chrX rmsk exon 131662100 131662993 1076 + . gene_id "ERVLE_Xq26.2a"; transcript_id "ERVLE_Xq26.2a"; locus "ERVLE_Xq26.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3725"; repClass "LTR"; repEnd "3140"; repFamily "ERVL"; repLeft "-2527"; repStart "2246"; chrX rmsk exon 131663532 131663952 730 + . gene_id "ERVLE_Xq26.2a"; transcript_id "ERVLE_Xq26.2a"; locus "ERVLE_Xq26.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3725"; repClass "LTR"; repEnd "4536"; repFamily "ERVL"; repLeft "-1131"; repStart "4096"; ### MER4B_Xq26.2a ### chrX rmsk gene 131689719 131692783 . - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0545"; model_cov "833"; model_pct "12.3"; chrX rmsk exon 131689719 131690523 3679 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "9"; repStart "-8"; chrX rmsk exon 131691144 131691431 1412 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "6737"; repFamily "ERV1"; repLeft "6443"; repStart "-21"; chrX rmsk exon 131691498 131691672 1119 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "895"; repFamily "ERV1"; repLeft "721"; repStart "-5"; chrX rmsk exon 131691673 131691726 280 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "6429"; repFamily "ERV1"; repLeft "6373"; repStart "-329"; chrX rmsk exon 131691795 131692201 1784 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "6345"; repFamily "ERV1"; repLeft "5932"; repStart "-413"; chrX rmsk exon 131692422 131692783 485 - . gene_id "MER4B_Xq26.2a"; transcript_id "MER4B_Xq26.2a"; locus "MER4B_Xq26.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0545"; repClass "LTR"; repEnd "2591"; repFamily "ERV1"; repLeft "2521"; repStart "-4167"; ### MER4B_Xq26.2b ### chrX rmsk gene 131692832 131696311 . - . gene_id "MER4B_Xq26.2b"; transcript_id "MER4B_Xq26.2b"; locus "MER4B_Xq26.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0546"; model_cov "3549"; model_pct "52.5"; chrX rmsk exon 131692832 131693217 1427 - . gene_id "MER4B_Xq26.2b"; transcript_id "MER4B_Xq26.2b"; locus "MER4B_Xq26.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0546"; repClass "LTR"; repEnd "3638"; repFamily "ERV1"; repLeft "3255"; repStart "-3120"; chrX rmsk exon 131693218 131695227 5368 - . gene_id "MER4B_Xq26.2b"; transcript_id "MER4B_Xq26.2b"; locus "MER4B_Xq26.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0546"; repClass "LTR"; repEnd "3633"; repFamily "ERV1"; repLeft "845"; repStart "-3125"; chrX rmsk exon 131695225 131695596 2106 - . gene_id "MER4B_Xq26.2b"; transcript_id "MER4B_Xq26.2b"; locus "MER4B_Xq26.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0546"; repClass "LTR"; repEnd "384"; repFamily "ERV1"; repLeft "6"; repStart "-6374"; chrX rmsk exon 131695601 131696311 4829 - . gene_id "MER4B_Xq26.2b"; transcript_id "MER4B_Xq26.2b"; locus "MER4B_Xq26.2b"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0546"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "192"; repStart "0"; ### MER41_Xq26.2a ### chrX rmsk gene 131708033 131709112 . - . gene_id "MER41_Xq26.2a"; transcript_id "MER41_Xq26.2a"; locus "MER41_Xq26.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0623"; model_cov "773"; model_pct "13.0"; chrX rmsk exon 131708033 131708651 4794 - . gene_id "MER41_Xq26.2a"; transcript_id "MER41_Xq26.2a"; locus "MER41_Xq26.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0623"; repClass "LTR"; repEnd "4190"; repFamily "ERV1"; repLeft "3584"; repStart "-1756"; chrX rmsk exon 131708949 131709112 4794 - . gene_id "MER41_Xq26.2a"; transcript_id "MER41_Xq26.2a"; locus "MER41_Xq26.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0623"; repClass "LTR"; repEnd "3583"; repFamily "ERV1"; repLeft "3416"; repStart "-2363"; ### HERVH_Xq26.2 ### chrX rmsk gene 131712025 131717764 . + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1290"; model_cov "4900"; model_pct "63.5"; chrX rmsk exon 131712025 131712446 2911 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 131712449 131715472 20681 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 131715467 131715614 803 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 131715614 131716106 3407 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chrX rmsk exon 131716109 131716769 4414 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 131716771 131716977 1247 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 131716976 131717354 2483 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 131717355 131717764 2926 + . gene_id "HERVH_Xq26.2"; transcript_id "HERVH_Xq26.2"; locus "HERVH_Xq26.2"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1290"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH48_Xq26.2 ### chrX rmsk gene 131850943 131852494 . - . gene_id "HERVH48_Xq26.2"; transcript_id "HERVH48_Xq26.2"; locus "HERVH48_Xq26.2"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0057"; model_cov "1226"; model_pct "18.4"; chrX rmsk exon 131850943 131851285 2672 - . gene_id "HERVH48_Xq26.2"; transcript_id "HERVH48_Xq26.2"; locus "HERVH48_Xq26.2"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0057"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "4"; repStart "-61"; chrX rmsk exon 131851293 131852494 9019 - . gene_id "HERVH48_Xq26.2"; transcript_id "HERVH48_Xq26.2"; locus "HERVH48_Xq26.2"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0057"; repClass "LTR"; repEnd "6646"; repFamily "ERV1"; repLeft "5420"; repStart "-8"; ### ERVLE_Xq26.2b ### chrX rmsk gene 131858801 131861507 . - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3727"; model_cov "1247"; model_pct "22.0"; chrX rmsk exon 131858801 131859049 629 - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3727"; repClass "LTR"; repEnd "3996"; repFamily "ERVL"; repLeft "3735"; repStart "-1671"; chrX rmsk exon 131859258 131859490 1217 - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3727"; repClass "LTR"; repEnd "3471"; repFamily "ERVL"; repLeft "3242"; repStart "-2196"; chrX rmsk exon 131859802 131860041 1217 - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3727"; repClass "LTR"; repEnd "3241"; repFamily "ERVL"; repLeft "3002"; repStart "-2426"; chrX rmsk exon 131860988 131861143 314 - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3727"; repClass "LTR"; repEnd "2470"; repFamily "ERVL"; repLeft "2317"; repStart "-3197"; chrX rmsk exon 131861149 131861507 876 - . gene_id "ERVLE_Xq26.2b"; transcript_id "ERVLE_Xq26.2b"; locus "ERVLE_Xq26.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3727"; repClass "LTR"; repEnd "2818"; repFamily "ERVL"; repLeft "2453"; repStart "-2849"; ### ERVLE_Xq26.2c ### chrX rmsk gene 131871587 131879717 . - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3728"; model_cov "4839"; model_pct "85.4"; chrX rmsk exon 131871587 131873205 5919 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "5284"; repFamily "ERVL"; repLeft "3667"; repStart "-383"; chrX rmsk exon 131873973 131874665 5919 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "3666"; repFamily "ERVL"; repLeft "2983"; repStart "-2001"; chrX rmsk exon 131874981 131875205 5919 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2787"; repStart "-2685"; chrX rmsk exon 131876361 131877351 2427 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "1778"; repStart "-2874"; chrX rmsk exon 131878384 131878706 473 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "1793"; repFamily "ERVL"; repLeft "1413"; repStart "-3874"; chrX rmsk exon 131878839 131879717 1123 - . gene_id "ERVLE_Xq26.2c"; transcript_id "ERVLE_Xq26.2c"; locus "ERVLE_Xq26.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3728"; repClass "LTR"; repEnd "1282"; repFamily "ERVL"; repLeft "333"; repStart "-4385"; ### ERVLB4_Xq26.2a ### chrX rmsk gene 131906090 131909121 . - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1889"; model_cov "1475"; model_pct "25.8"; chrX rmsk exon 131906090 131906461 670 - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1889"; repClass "LTR"; repEnd "3564"; repFamily "ERVL"; repLeft "3190"; repStart "-2150"; chrX rmsk exon 131906464 131906685 318 - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1889"; repClass "LTR"; repEnd "3031"; repFamily "ERVL"; repLeft "2794"; repStart "-2683"; chrX rmsk exon 131906834 131907405 1110 - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1889"; repClass "LTR"; repEnd "2470"; repFamily "ERVL"; repLeft "1878"; repStart "-3244"; chrX rmsk exon 131907710 131907771 494 - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1889"; repClass "LTR"; repEnd "1496"; repFamily "ERVL"; repLeft "1436"; repStart "-4218"; chrX rmsk exon 131908919 131909121 494 - . gene_id "ERVLB4_Xq26.2a"; transcript_id "ERVLB4_Xq26.2a"; locus "ERVLB4_Xq26.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1889"; repClass "LTR"; repEnd "1435"; repFamily "ERVL"; repLeft "1223"; repStart "-4279"; ### HERVW_Xq26.2 ### chrX rmsk gene 131929251 131933044 . - . gene_id "HERVW_Xq26.2"; transcript_id "HERVW_Xq26.2"; locus "HERVW_Xq26.2"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0321"; model_cov "3805"; model_pct "44.1"; chrX rmsk exon 131929251 131929515 1964 - . gene_id "HERVW_Xq26.2"; transcript_id "HERVW_Xq26.2"; locus "HERVW_Xq26.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0321"; repClass "LTR"; repEnd "8599"; repFamily "ERV1"; repLeft "8335"; repStart "-27"; chrX rmsk exon 131929506 131929543 299 - . gene_id "HERVW_Xq26.2"; transcript_id "HERVW_Xq26.2"; locus "HERVW_Xq26.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0321"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7511"; repStart "-1078"; chrX rmsk exon 131929537 131933044 27329 - . gene_id "HERVW_Xq26.2"; transcript_id "HERVW_Xq26.2"; locus "HERVW_Xq26.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0321"; repClass "LTR"; repEnd "7150"; repFamily "ERV1"; repLeft "3646"; repStart "-1476"; ### HERVL_Xq26.2 ### chrX rmsk gene 131949841 131951578 . + . gene_id "HERVL_Xq26.2"; transcript_id "HERVL_Xq26.2"; locus "HERVL_Xq26.2"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1396"; model_cov "985"; model_pct "17.4"; chrX rmsk exon 131949841 131950226 3159 + . gene_id "HERVL_Xq26.2"; transcript_id "HERVL_Xq26.2"; locus "HERVL_Xq26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1396"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chrX rmsk exon 131950298 131950333 3159 + . gene_id "HERVL_Xq26.2"; transcript_id "HERVL_Xq26.2"; locus "HERVL_Xq26.2"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1396"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; chrX rmsk exon 131950334 131950529 7803 + . gene_id "HERVL_Xq26.2"; transcript_id "HERVL_Xq26.2"; locus "HERVL_Xq26.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1396"; repClass "LTR"; repEnd "197"; repFamily "ERVL"; repLeft "-5457"; repStart "1"; chrX rmsk exon 131950781 131951578 7803 + . gene_id "HERVL_Xq26.2"; transcript_id "HERVL_Xq26.2"; locus "HERVL_Xq26.2"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1396"; repClass "LTR"; repEnd "987"; repFamily "ERVL"; repLeft "-4667"; repStart "198"; ### ERVLB4_Xq26.2b ### chrX rmsk gene 132294833 132297183 . - . gene_id "ERVLB4_Xq26.2b"; transcript_id "ERVLB4_Xq26.2b"; locus "ERVLB4_Xq26.2b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1890"; model_cov "2553"; model_pct "44.7"; chrX rmsk exon 132294833 132297183 8020 - . gene_id "ERVLB4_Xq26.2b"; transcript_id "ERVLB4_Xq26.2b"; locus "ERVLB4_Xq26.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1890"; repClass "LTR"; repEnd "5354"; repFamily "ERVL"; repLeft "2801"; repStart "-360"; ### ERVLE_Xq26.2d ### chrX rmsk gene 133005313 133007830 . + . gene_id "ERVLE_Xq26.2d"; transcript_id "ERVLE_Xq26.2d"; locus "ERVLE_Xq26.2d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3730"; model_cov "1198"; model_pct "21.1"; chrX rmsk exon 133005313 133006412 4063 + . gene_id "ERVLE_Xq26.2d"; transcript_id "ERVLE_Xq26.2d"; locus "ERVLE_Xq26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3730"; repClass "LTR"; repEnd "5004"; repFamily "ERVL"; repLeft "-663"; repStart "3850"; chrX rmsk exon 133007786 133007830 274 + . gene_id "ERVLE_Xq26.2d"; transcript_id "ERVLE_Xq26.2d"; locus "ERVLE_Xq26.2d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3730"; repClass "LTR"; repEnd "5050"; repFamily "ERVL"; repLeft "-617"; repStart "5006"; ### ERVLE_Xq26.2e ### chrX rmsk gene 133107116 133107986 . + . gene_id "ERVLE_Xq26.2e"; transcript_id "ERVLE_Xq26.2e"; locus "ERVLE_Xq26.2e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3731"; model_cov "894"; model_pct "15.8"; chrX rmsk exon 133107116 133107342 673 + . gene_id "ERVLE_Xq26.2e"; transcript_id "ERVLE_Xq26.2e"; locus "ERVLE_Xq26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3731"; repClass "LTR"; repEnd "3633"; repFamily "ERVL"; repLeft "-2034"; repStart "3407"; chrX rmsk exon 133107339 133107986 2696 + . gene_id "ERVLE_Xq26.2e"; transcript_id "ERVLE_Xq26.2e"; locus "ERVLE_Xq26.2e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3731"; repClass "LTR"; repEnd "4409"; repFamily "ERVL"; repLeft "-1258"; repStart "3741"; ### ERVLE_Xq26.2f ### chrX rmsk gene 133116929 133118147 . + . gene_id "ERVLE_Xq26.2f"; transcript_id "ERVLE_Xq26.2f"; locus "ERVLE_Xq26.2f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3732"; model_cov "1250"; model_pct "22.1"; chrX rmsk exon 133116929 133118147 3489 + . gene_id "ERVLE_Xq26.2f"; transcript_id "ERVLE_Xq26.2f"; locus "ERVLE_Xq26.2f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3732"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4417"; ### ERVL_Xq26.2 ### chrX rmsk gene 134092994 134099634 . + . gene_id "ERVL_Xq26.2"; transcript_id "ERVL_Xq26.2"; locus "ERVL_Xq26.2"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0500"; model_cov "5665"; model_pct "98.4"; chrX rmsk exon 134092994 134093826 35343 + . gene_id "ERVL_Xq26.2"; transcript_id "ERVL_Xq26.2"; locus "ERVL_Xq26.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0500"; repClass "LTR"; repEnd "930"; repFamily "ERVL"; repLeft "-4827"; repStart "90"; chrX rmsk exon 134093895 134097892 35343 + . gene_id "ERVL_Xq26.2"; transcript_id "ERVL_Xq26.2"; locus "ERVL_Xq26.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0500"; repClass "LTR"; repEnd "4971"; repFamily "ERVL"; repLeft "-786"; repStart "931"; chrX rmsk exon 134098341 134099100 35343 + . gene_id "ERVL_Xq26.2"; transcript_id "ERVL_Xq26.2"; locus "ERVL_Xq26.2"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0500"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4972"; chrX rmsk exon 134099101 134099634 3309 + . gene_id "ERVL_Xq26.2"; transcript_id "ERVL_Xq26.2"; locus "ERVL_Xq26.2"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0500"; repClass "LTR"; repEnd "514"; repFamily "ERVL"; repLeft "-6"; repStart "1"; ### ERVLE_Xq26.2g ### chrX rmsk gene 134127824 134131342 . + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3733"; model_cov "2489"; model_pct "43.9"; chrX rmsk exon 134127824 134128735 1198 + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3733"; repClass "LTR"; repEnd "2277"; repFamily "ERVL"; repLeft "-3390"; repStart "1320"; chrX rmsk exon 134129106 134130208 1395 + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3733"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-1931"; repStart "2602"; chrX rmsk exon 134130446 134130529 304 + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3733"; repClass "LTR"; repEnd "3862"; repFamily "ERVL"; repLeft "-1805"; repStart "3778"; chrX rmsk exon 134130981 134131184 800 + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3733"; repClass "LTR"; repEnd "4651"; repFamily "ERVL"; repLeft "-1016"; repStart "4455"; chrX rmsk exon 134131219 134131342 800 + . gene_id "ERVLE_Xq26.2g"; transcript_id "ERVLE_Xq26.2g"; locus "ERVLE_Xq26.2g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3733"; repClass "LTR"; repEnd "4770"; repFamily "ERVL"; repLeft "-897"; repStart "4652"; ### MER41_Xq26.2b ### chrX rmsk gene 134214682 134217740 . - . gene_id "MER41_Xq26.2b"; transcript_id "MER41_Xq26.2b"; locus "MER41_Xq26.2b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0624"; model_cov "1822"; model_pct "30.6"; chrX rmsk exon 134214682 134215143 3257 - . gene_id "MER41_Xq26.2b"; transcript_id "MER41_Xq26.2b"; locus "MER41_Xq26.2b"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0624"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "1"; repStart "-86"; chrX rmsk exon 134215144 134216245 12722 - . gene_id "MER41_Xq26.2b"; transcript_id "MER41_Xq26.2b"; locus "MER41_Xq26.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0624"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4833"; repStart "-2"; chrX rmsk exon 134216529 134217141 12722 - . gene_id "MER41_Xq26.2b"; transcript_id "MER41_Xq26.2b"; locus "MER41_Xq26.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0624"; repClass "LTR"; repEnd "4832"; repFamily "ERV1"; repLeft "4234"; repStart "-1114"; chrX rmsk exon 134217438 134217740 12722 - . gene_id "MER41_Xq26.2b"; transcript_id "MER41_Xq26.2b"; locus "MER41_Xq26.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0624"; repClass "LTR"; repEnd "4233"; repFamily "ERV1"; repLeft "4120"; repStart "-1713"; ### LTR25_Xq26.2 ### chrX rmsk gene 134218054 134220891 . - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0158"; model_cov "3058"; model_pct "42.5"; chrX rmsk exon 134218054 134218583 6744 - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0158"; repClass "LTR"; repEnd "5171"; repFamily "ERV1"; repLeft "4694"; repStart "-2017"; chrX rmsk exon 134218552 134219260 3053 - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0158"; repClass "LTR"; repEnd "4178"; repFamily "ERV1"; repLeft "3411"; repStart "-3010"; chrX rmsk exon 134219263 134219412 844 - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0158"; repClass "LTR"; repEnd "3255"; repFamily "ERV1"; repLeft "3108"; repStart "-3933"; chrX rmsk exon 134219413 134220075 3163 - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0158"; repClass "LTR"; repEnd "2694"; repFamily "ERV1"; repLeft "1877"; repStart "-4494"; chrX rmsk exon 134220067 134220891 5294 - . gene_id "LTR25_Xq26.2"; transcript_id "LTR25_Xq26.2"; locus "LTR25_Xq26.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0158"; repClass "LTR"; repEnd "2093"; repFamily "ERV1"; repLeft "1243"; repStart "-5095"; ### ERV316A3_Xq26.2 ### chrX rmsk gene 134253255 134261215 . - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2827"; model_cov "5087"; model_pct "97.3"; chrX rmsk exon 134253255 134253463 920 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "220"; repStart "-13"; chrX rmsk exon 134253733 134253947 920 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "219"; repFamily "ERVL"; repLeft "2"; repStart "-232"; chrX rmsk exon 134253977 134254521 2378 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "5158"; repFamily "ERVL"; repLeft "4601"; repStart "-68"; chrX rmsk exon 134255760 134257034 7825 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "4098"; repFamily "ERVL"; repLeft "2828"; repStart "-1128"; chrX rmsk exon 134257329 134260139 13930 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "2827"; repFamily "ERVL"; repLeft "-59"; repStart "-2399"; chrX rmsk exon 134260454 134260792 13930 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "7"; repStart "-4845"; chrX rmsk exon 134260795 134261215 1056 - . gene_id "ERV316A3_Xq26.2"; transcript_id "ERV316A3_Xq26.2"; locus "ERV316A3_Xq26.2"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2827"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVL40_Xq26.3 ### chrX rmsk gene 134972020 134977980 . + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; category "prototype"; intModel "HERVL40-int"; locid "HERVL40-int_0485"; model_cov "3051"; model_pct "55.2"; chrX rmsk exon 134972020 134972458 1693 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chrX rmsk exon 134972479 134972613 460 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "137"; repFamily "ERVL"; repLeft "-5393"; repStart "1"; chrX rmsk exon 134973866 134974126 1312 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "1185"; repFamily "ERVL"; repLeft "-4345"; repStart "918"; chrX rmsk exon 134974437 134974599 1312 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "1394"; repFamily "ERVL"; repLeft "-4136"; repStart "1186"; chrX rmsk exon 134974867 134975097 616 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "1617"; repFamily "ERVL"; repLeft "-3913"; repStart "1376"; chrX rmsk exon 134975097 134975267 960 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "2212"; repFamily "ERVL"; repLeft "-3318"; repStart "2050"; chrX rmsk exon 134975267 134976210 4320 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "4125"; repFamily "ERVL"; repLeft "-1405"; repStart "3143"; chrX rmsk exon 134976179 134976608 4784 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "-609"; repStart "4470"; chrX rmsk exon 134976923 134977497 4784 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "5526"; repFamily "ERVL"; repLeft "-4"; repStart "4922"; chrX rmsk exon 134977500 134977980 1447 + . gene_id "HERVL40_Xq26.3"; transcript_id "HERVL40_Xq26.3"; locus "HERVL40_Xq26.3"; repName "LTR40c"; geneRegion "ltr"; locid "HERVL40-int_0485"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "-4"; repStart "1"; ### ERVLE_Xq26.3a ### chrX rmsk gene 134981596 134985519 . - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3734"; model_cov "2412"; model_pct "42.6"; chrX rmsk exon 134981596 134981688 281 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "5641"; repFamily "ERVL"; repLeft "5549"; repStart "-26"; chrX rmsk exon 134981967 134982483 1440 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4743"; repStart "-370"; chrX rmsk exon 134982514 134982694 433 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "4508"; repFamily "ERVL"; repLeft "4311"; repStart "-1159"; chrX rmsk exon 134982890 134983563 1999 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "4239"; repFamily "ERVL"; repLeft "3530"; repStart "-1428"; chrX rmsk exon 134984340 134984487 635 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "3546"; repFamily "ERVL"; repLeft "3398"; repStart "-2121"; chrX rmsk exon 134984483 134984635 431 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "2355"; repFamily "ERVL"; repLeft "2202"; repStart "-3312"; chrX rmsk exon 134984906 134985372 1662 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "2196"; repFamily "ERVL"; repLeft "1708"; repStart "-3471"; chrX rmsk exon 134985449 134985519 284 - . gene_id "ERVLE_Xq26.3a"; transcript_id "ERVLE_Xq26.3a"; locus "ERVLE_Xq26.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3734"; repClass "LTR"; repEnd "1570"; repFamily "ERVL"; repLeft "1499"; repStart "-4097"; ### ERVLE_Xq26.3b ### chrX rmsk gene 135178191 135178875 . - . gene_id "ERVLE_Xq26.3b"; transcript_id "ERVLE_Xq26.3b"; locus "ERVLE_Xq26.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3737"; model_cov "710"; model_pct "12.5"; chrX rmsk exon 135178191 135178875 712 - . gene_id "ERVLE_Xq26.3b"; transcript_id "ERVLE_Xq26.3b"; locus "ERVLE_Xq26.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3737"; repClass "LTR"; repEnd "2817"; repFamily "ERVL"; repLeft "2107"; repStart "-2850"; ### ERVLE_Xq26.3c ### chrX rmsk gene 135270491 135271364 . - . gene_id "ERVLE_Xq26.3c"; transcript_id "ERVLE_Xq26.3c"; locus "ERVLE_Xq26.3c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3739"; model_cov "911"; model_pct "16.1"; chrX rmsk exon 135270491 135271364 1281 - . gene_id "ERVLE_Xq26.3c"; transcript_id "ERVLE_Xq26.3c"; locus "ERVLE_Xq26.3c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3739"; repClass "LTR"; repEnd "5202"; repFamily "ERVL"; repLeft "4291"; repStart "-465"; ### ERVLB4_Xq26.3a ### chrX rmsk gene 135340709 135342184 . + . gene_id "ERVLB4_Xq26.3a"; transcript_id "ERVLB4_Xq26.3a"; locus "ERVLB4_Xq26.3a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1893"; model_cov "1532"; model_pct "26.8"; chrX rmsk exon 135340709 135342184 7560 + . gene_id "ERVLB4_Xq26.3a"; transcript_id "ERVLB4_Xq26.3a"; locus "ERVLB4_Xq26.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1893"; repClass "LTR"; repEnd "2779"; repFamily "ERVL"; repLeft "-2935"; repStart "1247"; ### HERVL_Xq26.3a ### chrX rmsk gene 135393377 135395574 . + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1399"; model_cov "848"; model_pct "15.0"; chrX rmsk exon 135393377 135393626 1667 + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1399"; repClass "LTR"; repEnd "266"; repFamily "ERVL"; repLeft "-178"; repStart "1"; chrX rmsk exon 135393968 135394237 6931 + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1399"; repClass "LTR"; repEnd "5068"; repFamily "ERVL"; repLeft "-586"; repStart "4805"; chrX rmsk exon 135394529 135395108 6931 + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1399"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5069"; chrX rmsk exon 135395109 135395485 2917 + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1399"; repClass "LTR"; repEnd "384"; repFamily "ERVL"; repLeft "-60"; repStart "1"; chrX rmsk exon 135395532 135395574 2917 + . gene_id "HERVL_Xq26.3a"; transcript_id "HERVL_Xq26.3a"; locus "HERVL_Xq26.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1399"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "385"; ### ERVLE_Xq26.3d ### chrX rmsk gene 135401773 135402553 . - . gene_id "ERVLE_Xq26.3d"; transcript_id "ERVLE_Xq26.3d"; locus "ERVLE_Xq26.3d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3742"; model_cov "812"; model_pct "14.3"; chrX rmsk exon 135401773 135402553 1261 - . gene_id "ERVLE_Xq26.3d"; transcript_id "ERVLE_Xq26.3d"; locus "ERVLE_Xq26.3d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3742"; repClass "LTR"; repEnd "5198"; repFamily "ERVL"; repLeft "4386"; repStart "-469"; ### ERVLE_Xq26.3e ### chrX rmsk gene 135404075 135405758 . + . gene_id "ERVLE_Xq26.3e"; transcript_id "ERVLE_Xq26.3e"; locus "ERVLE_Xq26.3e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3743"; model_cov "1266"; model_pct "22.3"; chrX rmsk exon 135404075 135404199 329 + . gene_id "ERVLE_Xq26.3e"; transcript_id "ERVLE_Xq26.3e"; locus "ERVLE_Xq26.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3743"; repClass "LTR"; repEnd "3004"; repFamily "ERVL"; repLeft "-2663"; repStart "2883"; chrX rmsk exon 135404264 135404447 3867 + . gene_id "ERVLE_Xq26.3e"; transcript_id "ERVLE_Xq26.3e"; locus "ERVLE_Xq26.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3743"; repClass "LTR"; repEnd "4266"; repFamily "ERVL"; repLeft "-1401"; repStart "4088"; chrX rmsk exon 135404822 135405758 3867 + . gene_id "ERVLE_Xq26.3e"; transcript_id "ERVLE_Xq26.3e"; locus "ERVLE_Xq26.3e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3743"; repClass "LTR"; repEnd "5234"; repFamily "ERVL"; repLeft "-433"; repStart "4267"; ### ERVLB4_Xq26.3b ### chrX rmsk gene 135444619 135445447 . - . gene_id "ERVLB4_Xq26.3b"; transcript_id "ERVLB4_Xq26.3b"; locus "ERVLB4_Xq26.3b"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1894"; model_cov "681"; model_pct "11.9"; chrX rmsk exon 135444619 135445071 684 - . gene_id "ERVLB4_Xq26.3b"; transcript_id "ERVLB4_Xq26.3b"; locus "ERVLB4_Xq26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1894"; repClass "LTR"; repEnd "2714"; repFamily "ERVL"; repLeft "2241"; repStart "-3000"; chrX rmsk exon 135445249 135445447 290 - . gene_id "ERVLB4_Xq26.3b"; transcript_id "ERVLB4_Xq26.3b"; locus "ERVLB4_Xq26.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1894"; repClass "LTR"; repEnd "2042"; repFamily "ERVL"; repLeft "1834"; repStart "-3672"; ### ERVLE_Xq26.3f ### chrX rmsk gene 135591861 135592930 . - . gene_id "ERVLE_Xq26.3f"; transcript_id "ERVLE_Xq26.3f"; locus "ERVLE_Xq26.3f"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3744"; model_cov "680"; model_pct "12.0"; chrX rmsk exon 135591861 135592290 917 - . gene_id "ERVLE_Xq26.3f"; transcript_id "ERVLE_Xq26.3f"; locus "ERVLE_Xq26.3f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3744"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "9"; repStart "-203"; chrX rmsk exon 135592294 135592930 2081 - . gene_id "ERVLE_Xq26.3f"; transcript_id "ERVLE_Xq26.3f"; locus "ERVLE_Xq26.3f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3744"; repClass "LTR"; repEnd "5663"; repFamily "ERVL"; repLeft "4983"; repStart "-4"; ### ERVLB4_Xq26.3c ### chrX rmsk gene 135615673 135620339 . - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1896"; model_cov "2315"; model_pct "40.5"; chrX rmsk exon 135615673 135616432 2917 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "4550"; repStart "-377"; chrX rmsk exon 135616506 135616875 3770 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "4199"; repStart "-1150"; chrX rmsk exon 135617335 135617831 3770 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "3674"; repStart "-1516"; chrX rmsk exon 135618819 135618945 293 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "3661"; repFamily "ERVL"; repLeft "3548"; repStart "-2053"; chrX rmsk exon 135618942 135619346 1554 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2648"; repStart "-2629"; chrX rmsk exon 135620251 135620339 1554 - . gene_id "ERVLB4_Xq26.3c"; transcript_id "ERVLB4_Xq26.3c"; locus "ERVLB4_Xq26.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1896"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "2558"; repStart "-3067"; ### HERV4_Xq26.3a ### chrX rmsk gene 135626015 135631476 . - . gene_id "HERV4_Xq26.3a"; transcript_id "HERV4_Xq26.3a"; locus "HERV4_Xq26.3a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0151"; model_cov "4476"; model_pct "68.5"; chrX rmsk exon 135626015 135626230 2111 - . gene_id "HERV4_Xq26.3a"; transcript_id "HERV4_Xq26.3a"; locus "HERV4_Xq26.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0151"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "4702"; repStart "-1643"; chrX rmsk exon 135626561 135627145 2111 - . gene_id "HERV4_Xq26.3a"; transcript_id "HERV4_Xq26.3a"; locus "HERV4_Xq26.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0151"; repClass "LTR"; repEnd "4701"; repFamily "ERV1"; repLeft "4126"; repStart "-1838"; chrX rmsk exon 135627462 135627769 2111 - . gene_id "HERV4_Xq26.3a"; transcript_id "HERV4_Xq26.3a"; locus "HERV4_Xq26.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0151"; repClass "LTR"; repEnd "4125"; repFamily "ERV1"; repLeft "3831"; repStart "-2414"; chrX rmsk exon 135628062 135631476 2278 - . gene_id "HERV4_Xq26.3a"; transcript_id "HERV4_Xq26.3a"; locus "HERV4_Xq26.3a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0151"; repClass "LTR"; repEnd "3830"; repFamily "ERV1"; repLeft "417"; repStart "-2709"; ### ERVLB4_Xq26.3d ### chrX rmsk gene 135636182 135637355 . + . gene_id "ERVLB4_Xq26.3d"; transcript_id "ERVLB4_Xq26.3d"; locus "ERVLB4_Xq26.3d"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1897"; model_cov "1167"; model_pct "20.4"; chrX rmsk exon 135636182 135636746 1251 + . gene_id "ERVLB4_Xq26.3d"; transcript_id "ERVLB4_Xq26.3d"; locus "ERVLB4_Xq26.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1897"; repClass "LTR"; repEnd "1414"; repFamily "ERVL"; repLeft "-4300"; repStart "844"; chrX rmsk exon 135636751 135637355 2517 + . gene_id "ERVLB4_Xq26.3d"; transcript_id "ERVLB4_Xq26.3d"; locus "ERVLB4_Xq26.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1897"; repClass "LTR"; repEnd "2397"; repFamily "ERVL"; repLeft "-3317"; repStart "1800"; ### HERV4_Xq26.3b ### chrX rmsk gene 135650932 135655442 . + . gene_id "HERV4_Xq26.3b"; transcript_id "HERV4_Xq26.3b"; locus "HERV4_Xq26.3b"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0152"; model_cov "4179"; model_pct "63.9"; chrX rmsk exon 135650932 135654290 3342 + . gene_id "HERV4_Xq26.3b"; transcript_id "HERV4_Xq26.3b"; locus "HERV4_Xq26.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0152"; repClass "LTR"; repEnd "4851"; repFamily "ERV1"; repLeft "-1688"; repStart "1505"; chrX rmsk exon 135654597 135655442 3342 + . gene_id "HERV4_Xq26.3b"; transcript_id "HERV4_Xq26.3b"; locus "HERV4_Xq26.3b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0152"; repClass "LTR"; repEnd "5685"; repFamily "ERV1"; repLeft "-854"; repStart "4852"; ### ERVLB4_Xq26.3e ### chrX rmsk gene 135668676 135673348 . + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1898"; model_cov "2315"; model_pct "40.5"; chrX rmsk exon 135668676 135668764 1554 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "-3067"; repStart "2558"; chrX rmsk exon 135669672 135670076 1554 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "-2629"; repStart "2648"; chrX rmsk exon 135670073 135670199 293 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "3661"; repFamily "ERVL"; repLeft "-2053"; repStart "3548"; chrX rmsk exon 135671190 135671686 3770 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "4198"; repFamily "ERVL"; repLeft "-1516"; repStart "3674"; chrX rmsk exon 135672146 135672515 3770 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "-1150"; repStart "4199"; chrX rmsk exon 135672589 135673348 2899 + . gene_id "ERVLB4_Xq26.3e"; transcript_id "ERVLB4_Xq26.3e"; locus "ERVLB4_Xq26.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1898"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "-377"; repStart "4550"; ### PRIMA41_Xq26.3a ### chrX rmsk gene 135699725 135702869 . + . gene_id "PRIMA41_Xq26.3a"; transcript_id "PRIMA41_Xq26.3a"; locus "PRIMA41_Xq26.3a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0177"; model_cov "2647"; model_pct "34.1"; chrX rmsk exon 135699725 135700125 502 + . gene_id "PRIMA41_Xq26.3a"; transcript_id "PRIMA41_Xq26.3a"; locus "PRIMA41_Xq26.3a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0177"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4772"; repStart "2564"; chrX rmsk exon 135700301 135701053 977 + . gene_id "PRIMA41_Xq26.3a"; transcript_id "PRIMA41_Xq26.3a"; locus "PRIMA41_Xq26.3a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0177"; repClass "LTR"; repEnd "4975"; repFamily "ERV1"; repLeft "-2781"; repStart "4208"; chrX rmsk exon 135701092 135701747 1515 + . gene_id "PRIMA41_Xq26.3a"; transcript_id "PRIMA41_Xq26.3a"; locus "PRIMA41_Xq26.3a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0177"; repClass "LTR"; repEnd "5044"; repFamily "ERV1"; repLeft "-2712"; repStart "4401"; chrX rmsk exon 135702059 135702869 1515 + . gene_id "PRIMA41_Xq26.3a"; transcript_id "PRIMA41_Xq26.3a"; locus "PRIMA41_Xq26.3a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0177"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "-1894"; repStart "5045"; ### ERVLB4_Xq26.3f ### chrX rmsk gene 135704187 135705363 . - . gene_id "ERVLB4_Xq26.3f"; transcript_id "ERVLB4_Xq26.3f"; locus "ERVLB4_Xq26.3f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1899"; model_cov "677"; model_pct "11.8"; chrX rmsk exon 135704187 135704256 320 - . gene_id "ERVLB4_Xq26.3f"; transcript_id "ERVLB4_Xq26.3f"; locus "ERVLB4_Xq26.3f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1899"; repClass "LTR"; repEnd "605"; repFamily "ERVL"; repLeft "536"; repStart "-58"; chrX rmsk exon 135704285 135704667 923 - . gene_id "ERVLB4_Xq26.3f"; transcript_id "ERVLB4_Xq26.3f"; locus "ERVLB4_Xq26.3f"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-B4-int_1899"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "11"; repStart "-210"; chrX rmsk exon 135704674 135705363 1794 - . gene_id "ERVLB4_Xq26.3f"; transcript_id "ERVLB4_Xq26.3f"; locus "ERVLB4_Xq26.3f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1899"; repClass "LTR"; repEnd "5708"; repFamily "ERVL"; repLeft "5031"; repStart "-6"; ### ERVLB4_Xq26.3g ### chrX rmsk gene 135710350 135711089 . - . gene_id "ERVLB4_Xq26.3g"; transcript_id "ERVLB4_Xq26.3g"; locus "ERVLB4_Xq26.3g"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1901"; model_cov "760"; model_pct "13.3"; chrX rmsk exon 135710350 135711089 3038 - . gene_id "ERVLB4_Xq26.3g"; transcript_id "ERVLB4_Xq26.3g"; locus "ERVLB4_Xq26.3g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1901"; repClass "LTR"; repEnd "4434"; repFamily "ERVL"; repLeft "3674"; repStart "-1280"; ### ERVLB4_Xq26.3h ### chrX rmsk gene 135729071 135729820 . - . gene_id "ERVLB4_Xq26.3h"; transcript_id "ERVLB4_Xq26.3h"; locus "ERVLB4_Xq26.3h"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1903"; model_cov "763"; model_pct "13.4"; chrX rmsk exon 135729071 135729175 469 - . gene_id "ERVLB4_Xq26.3h"; transcript_id "ERVLB4_Xq26.3h"; locus "ERVLB4_Xq26.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1903"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "3557"; repStart "-2054"; chrX rmsk exon 135729186 135729820 1588 - . gene_id "ERVLB4_Xq26.3h"; transcript_id "ERVLB4_Xq26.3h"; locus "ERVLB4_Xq26.3h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1903"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "2420"; repStart "-2634"; ### ERVLE_Xq26.3g ### chrX rmsk gene 135733524 135735793 . - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3747"; model_cov "981"; model_pct "17.3"; chrX rmsk exon 135733524 135733880 2409 - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3747"; repClass "LTR"; repEnd "978"; repFamily "ERVL"; repLeft "610"; repStart "-4689"; chrX rmsk exon 135734204 135734562 2409 - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3747"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "237"; repStart "-5058"; chrX rmsk exon 135734694 135734811 445 - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3747"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "107"; repStart "-5444"; chrX rmsk exon 135735235 135735355 319 - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3747"; repClass "LTR"; repEnd "79"; repFamily "ERVL"; repLeft "-46"; repStart "-5588"; chrX rmsk exon 135735706 135735793 229 - . gene_id "ERVLE_Xq26.3g"; transcript_id "ERVLE_Xq26.3g"; locus "ERVLE_Xq26.3g"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3747"; repClass "LTR"; repEnd "620"; repFamily "ERVL"; repLeft "535"; repStart "-43"; ### ERVL_Xq26.3 ### chrX rmsk gene 135738163 135739412 . + . gene_id "ERVL_Xq26.3"; transcript_id "ERVL_Xq26.3"; locus "ERVL_Xq26.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0503"; model_cov "645"; model_pct "11.2"; chrX rmsk exon 135738163 135738409 870 + . gene_id "ERVL_Xq26.3"; transcript_id "ERVL_Xq26.3"; locus "ERVL_Xq26.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0503"; repClass "LTR"; repEnd "2027"; repFamily "ERVL"; repLeft "-3730"; repStart "1773"; chrX rmsk exon 135738421 135738692 1066 + . gene_id "ERVL_Xq26.3"; transcript_id "ERVL_Xq26.3"; locus "ERVL_Xq26.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0503"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "-2151"; repStart "3326"; chrX rmsk exon 135739301 135739412 382 + . gene_id "ERVL_Xq26.3"; transcript_id "ERVL_Xq26.3"; locus "ERVL_Xq26.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0503"; repClass "LTR"; repEnd "3716"; repFamily "ERVL"; repLeft "-2041"; repStart "3605"; ### HML1_Xq26.3 ### chrX rmsk gene 135745315 135747484 . + . gene_id "HML1_Xq26.3"; transcript_id "HML1_Xq26.3"; locus "HML1_Xq26.3"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0128"; model_cov "1832"; model_pct "30.1"; chrX rmsk exon 135745315 135746686 8755 + . gene_id "HML1_Xq26.3"; transcript_id "HML1_Xq26.3"; locus "HML1_Xq26.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0128"; repClass "LTR"; repEnd "5606"; repFamily "ERVK"; repLeft "-490"; repStart "4079"; chrX rmsk exon 135746681 135746862 1594 + . gene_id "HML1_Xq26.3"; transcript_id "HML1_Xq26.3"; locus "HML1_Xq26.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0128"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5715"; chrX rmsk exon 135746938 135747072 746 + . gene_id "HML1_Xq26.3"; transcript_id "HML1_Xq26.3"; locus "HML1_Xq26.3"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0128"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5973"; chrX rmsk exon 135747076 135747484 1973 + . gene_id "HML1_Xq26.3"; transcript_id "HML1_Xq26.3"; locus "HML1_Xq26.3"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0128"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_Xq26.3h ### chrX rmsk gene 135747490 135749792 . + . gene_id "ERVLE_Xq26.3h"; transcript_id "ERVLE_Xq26.3h"; locus "ERVLE_Xq26.3h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3749"; model_cov "855"; model_pct "15.1"; chrX rmsk exon 135747490 135747576 396 + . gene_id "ERVLE_Xq26.3h"; transcript_id "ERVLE_Xq26.3h"; locus "ERVLE_Xq26.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3749"; repClass "LTR"; repEnd "187"; repFamily "ERVL"; repLeft "-5480"; repStart "107"; chrX rmsk exon 135748586 135748622 396 + . gene_id "ERVLE_Xq26.3h"; transcript_id "ERVLE_Xq26.3h"; locus "ERVLE_Xq26.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3749"; repClass "LTR"; repEnd "223"; repFamily "ERVL"; repLeft "-5444"; repStart "188"; chrX rmsk exon 135748754 135749113 2409 + . gene_id "ERVLE_Xq26.3h"; transcript_id "ERVLE_Xq26.3h"; locus "ERVLE_Xq26.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3749"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-5058"; repStart "237"; chrX rmsk exon 135749437 135749792 2409 + . gene_id "ERVLE_Xq26.3h"; transcript_id "ERVLE_Xq26.3h"; locus "ERVLE_Xq26.3h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3749"; repClass "LTR"; repEnd "978"; repFamily "ERVL"; repLeft "-4689"; repStart "610"; ### ERVLB4_Xq26.3i ### chrX rmsk gene 135753496 135754245 . + . gene_id "ERVLB4_Xq26.3i"; transcript_id "ERVLB4_Xq26.3i"; locus "ERVLB4_Xq26.3i"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1904"; model_cov "763"; model_pct "13.4"; chrX rmsk exon 135753496 135754130 1546 + . gene_id "ERVLB4_Xq26.3i"; transcript_id "ERVLB4_Xq26.3i"; locus "ERVLB4_Xq26.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1904"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135754141 135754245 469 + . gene_id "ERVLB4_Xq26.3i"; transcript_id "ERVLB4_Xq26.3i"; locus "ERVLB4_Xq26.3i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1904"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3557"; ### ERVLB4_Xq26.3j ### chrX rmsk gene 135770657 135771374 . + . gene_id "ERVLB4_Xq26.3j"; transcript_id "ERVLB4_Xq26.3j"; locus "ERVLB4_Xq26.3j"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1906"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135770657 135771374 3075 + . gene_id "ERVLB4_Xq26.3j"; transcript_id "ERVLB4_Xq26.3j"; locus "ERVLB4_Xq26.3j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1906"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3k ### chrX rmsk gene 135772555 135774476 . + . gene_id "ERVLB4_Xq26.3k"; transcript_id "ERVLB4_Xq26.3k"; locus "ERVLB4_Xq26.3k"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1907"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135772555 135773190 1630 + . gene_id "ERVLB4_Xq26.3k"; transcript_id "ERVLB4_Xq26.3k"; locus "ERVLB4_Xq26.3k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1907"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135773193 135773305 478 + . gene_id "ERVLB4_Xq26.3k"; transcript_id "ERVLB4_Xq26.3k"; locus "ERVLB4_Xq26.3k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1907"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135773663 135774476 2794 + . gene_id "ERVLB4_Xq26.3k"; transcript_id "ERVLB4_Xq26.3k"; locus "ERVLB4_Xq26.3k"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1907"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3l ### chrX rmsk gene 135787920 135788636 . + . gene_id "ERVLB4_Xq26.3l"; transcript_id "ERVLB4_Xq26.3l"; locus "ERVLB4_Xq26.3l"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1909"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135787920 135788636 3081 + . gene_id "ERVLB4_Xq26.3l"; transcript_id "ERVLB4_Xq26.3l"; locus "ERVLB4_Xq26.3l"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1909"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3m ### chrX rmsk gene 135789817 135791738 . + . gene_id "ERVLB4_Xq26.3m"; transcript_id "ERVLB4_Xq26.3m"; locus "ERVLB4_Xq26.3m"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1910"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135789817 135790452 1630 + . gene_id "ERVLB4_Xq26.3m"; transcript_id "ERVLB4_Xq26.3m"; locus "ERVLB4_Xq26.3m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1910"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135790455 135790567 478 + . gene_id "ERVLB4_Xq26.3m"; transcript_id "ERVLB4_Xq26.3m"; locus "ERVLB4_Xq26.3m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1910"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135790925 135791738 2794 + . gene_id "ERVLB4_Xq26.3m"; transcript_id "ERVLB4_Xq26.3m"; locus "ERVLB4_Xq26.3m"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1910"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3n ### chrX rmsk gene 135805192 135805909 . + . gene_id "ERVLB4_Xq26.3n"; transcript_id "ERVLB4_Xq26.3n"; locus "ERVLB4_Xq26.3n"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1912"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135805192 135805909 3092 + . gene_id "ERVLB4_Xq26.3n"; transcript_id "ERVLB4_Xq26.3n"; locus "ERVLB4_Xq26.3n"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1912"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3o ### chrX rmsk gene 135807090 135809011 . + . gene_id "ERVLB4_Xq26.3o"; transcript_id "ERVLB4_Xq26.3o"; locus "ERVLB4_Xq26.3o"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1913"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135807090 135807725 1637 + . gene_id "ERVLB4_Xq26.3o"; transcript_id "ERVLB4_Xq26.3o"; locus "ERVLB4_Xq26.3o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1913"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135807728 135807840 476 + . gene_id "ERVLB4_Xq26.3o"; transcript_id "ERVLB4_Xq26.3o"; locus "ERVLB4_Xq26.3o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1913"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135808198 135809011 2794 + . gene_id "ERVLB4_Xq26.3o"; transcript_id "ERVLB4_Xq26.3o"; locus "ERVLB4_Xq26.3o"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1913"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3p ### chrX rmsk gene 135822457 135823174 . + . gene_id "ERVLB4_Xq26.3p"; transcript_id "ERVLB4_Xq26.3p"; locus "ERVLB4_Xq26.3p"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1915"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135822457 135823174 3075 + . gene_id "ERVLB4_Xq26.3p"; transcript_id "ERVLB4_Xq26.3p"; locus "ERVLB4_Xq26.3p"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1915"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3q ### chrX rmsk gene 135824356 135826277 . + . gene_id "ERVLB4_Xq26.3q"; transcript_id "ERVLB4_Xq26.3q"; locus "ERVLB4_Xq26.3q"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1916"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135824356 135824991 1614 + . gene_id "ERVLB4_Xq26.3q"; transcript_id "ERVLB4_Xq26.3q"; locus "ERVLB4_Xq26.3q"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1916"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135824994 135825106 476 + . gene_id "ERVLB4_Xq26.3q"; transcript_id "ERVLB4_Xq26.3q"; locus "ERVLB4_Xq26.3q"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1916"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135825464 135826277 2794 + . gene_id "ERVLB4_Xq26.3q"; transcript_id "ERVLB4_Xq26.3q"; locus "ERVLB4_Xq26.3q"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1916"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3r ### chrX rmsk gene 135839713 135840429 . + . gene_id "ERVLB4_Xq26.3r"; transcript_id "ERVLB4_Xq26.3r"; locus "ERVLB4_Xq26.3r"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1918"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135839713 135840429 3081 + . gene_id "ERVLB4_Xq26.3r"; transcript_id "ERVLB4_Xq26.3r"; locus "ERVLB4_Xq26.3r"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1918"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3s ### chrX rmsk gene 135841610 135843531 . + . gene_id "ERVLB4_Xq26.3s"; transcript_id "ERVLB4_Xq26.3s"; locus "ERVLB4_Xq26.3s"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1919"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135841610 135842245 1630 + . gene_id "ERVLB4_Xq26.3s"; transcript_id "ERVLB4_Xq26.3s"; locus "ERVLB4_Xq26.3s"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1919"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135842248 135842360 478 + . gene_id "ERVLB4_Xq26.3s"; transcript_id "ERVLB4_Xq26.3s"; locus "ERVLB4_Xq26.3s"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1919"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135842718 135843531 2794 + . gene_id "ERVLB4_Xq26.3s"; transcript_id "ERVLB4_Xq26.3s"; locus "ERVLB4_Xq26.3s"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1919"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3t ### chrX rmsk gene 135856995 135857712 . + . gene_id "ERVLB4_Xq26.3t"; transcript_id "ERVLB4_Xq26.3t"; locus "ERVLB4_Xq26.3t"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1921"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135856995 135857712 3092 + . gene_id "ERVLB4_Xq26.3t"; transcript_id "ERVLB4_Xq26.3t"; locus "ERVLB4_Xq26.3t"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1921"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3u ### chrX rmsk gene 135858893 135860814 . + . gene_id "ERVLB4_Xq26.3u"; transcript_id "ERVLB4_Xq26.3u"; locus "ERVLB4_Xq26.3u"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1922"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135858893 135859528 1643 + . gene_id "ERVLB4_Xq26.3u"; transcript_id "ERVLB4_Xq26.3u"; locus "ERVLB4_Xq26.3u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1922"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135859531 135859643 476 + . gene_id "ERVLB4_Xq26.3u"; transcript_id "ERVLB4_Xq26.3u"; locus "ERVLB4_Xq26.3u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1922"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135860001 135860814 2794 + . gene_id "ERVLB4_Xq26.3u"; transcript_id "ERVLB4_Xq26.3u"; locus "ERVLB4_Xq26.3u"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1922"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3v ### chrX rmsk gene 135874275 135874991 . + . gene_id "ERVLB4_Xq26.3v"; transcript_id "ERVLB4_Xq26.3v"; locus "ERVLB4_Xq26.3v"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1924"; model_cov "739"; model_pct "12.9"; chrX rmsk exon 135874275 135874991 3116 + . gene_id "ERVLB4_Xq26.3v"; transcript_id "ERVLB4_Xq26.3v"; locus "ERVLB4_Xq26.3v"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1924"; repClass "LTR"; repEnd "4413"; repFamily "ERVL"; repLeft "-1301"; repStart "3674"; ### ERVLB4_Xq26.3w ### chrX rmsk gene 135876172 135878093 . + . gene_id "ERVLB4_Xq26.3w"; transcript_id "ERVLB4_Xq26.3w"; locus "ERVLB4_Xq26.3w"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1925"; model_cov "1571"; model_pct "27.5"; chrX rmsk exon 135876172 135876807 1637 + . gene_id "ERVLB4_Xq26.3w"; transcript_id "ERVLB4_Xq26.3w"; locus "ERVLB4_Xq26.3w"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1925"; repClass "LTR"; repEnd "3080"; repFamily "ERVL"; repLeft "-2634"; repStart "2420"; chrX rmsk exon 135876810 135876922 476 + . gene_id "ERVLB4_Xq26.3w"; transcript_id "ERVLB4_Xq26.3w"; locus "ERVLB4_Xq26.3w"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1925"; repClass "LTR"; repEnd "3660"; repFamily "ERVL"; repLeft "-2054"; repStart "3549"; chrX rmsk exon 135877280 135878093 2781 + . gene_id "ERVLB4_Xq26.3w"; transcript_id "ERVLB4_Xq26.3w"; locus "ERVLB4_Xq26.3w"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1925"; repClass "LTR"; repEnd "4918"; repFamily "ERVL"; repLeft "-796"; repStart "4118"; ### ERVLB4_Xq26.3x ### chrX rmsk gene 135913134 135918031 . - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1927"; model_cov "2167"; model_pct "37.9"; chrX rmsk exon 135913134 135913369 3089 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "5103"; repStart "-377"; chrX rmsk exon 135913678 135914216 3089 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "5102"; repFamily "ERVL"; repLeft "4550"; repStart "-612"; chrX rmsk exon 135914287 135914659 2841 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "4564"; repFamily "ERVL"; repLeft "4198"; repStart "-1150"; chrX rmsk exon 135915123 135915347 2841 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "4197"; repFamily "ERVL"; repLeft "3964"; repStart "-1517"; chrX rmsk exon 135915355 135915458 515 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "3800"; repFamily "ERVL"; repLeft "3661"; repStart "-1914"; chrX rmsk exon 135916483 135916577 326 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "3630"; repFamily "ERVL"; repLeft "3548"; repStart "-2084"; chrX rmsk exon 135916574 135917003 1896 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "3085"; repFamily "ERVL"; repLeft "2648"; repStart "-2629"; chrX rmsk exon 135917906 135918031 1896 - . gene_id "ERVLB4_Xq26.3x"; transcript_id "ERVLB4_Xq26.3x"; locus "ERVLB4_Xq26.3x"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1927"; repClass "LTR"; repEnd "2647"; repFamily "ERVL"; repLeft "2523"; repStart "-3067"; ### PRIMA41_Xq26.3b ### chrX rmsk gene 135923357 135925545 . - . gene_id "PRIMA41_Xq26.3b"; transcript_id "PRIMA41_Xq26.3b"; locus "PRIMA41_Xq26.3b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0178"; model_cov "1569"; model_pct "20.2"; chrX rmsk exon 135923357 135923602 2277 - . gene_id "PRIMA41_Xq26.3b"; transcript_id "PRIMA41_Xq26.3b"; locus "PRIMA41_Xq26.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0178"; repClass "LTR"; repEnd "6154"; repFamily "ERV1"; repLeft "5919"; repStart "-1602"; chrX rmsk exon 135923885 135924775 2277 - . gene_id "PRIMA41_Xq26.3b"; transcript_id "PRIMA41_Xq26.3b"; locus "PRIMA41_Xq26.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0178"; repClass "LTR"; repEnd "5918"; repFamily "ERV1"; repLeft "5046"; repStart "-1838"; chrX rmsk exon 135925073 135925545 2277 - . gene_id "PRIMA41_Xq26.3b"; transcript_id "PRIMA41_Xq26.3b"; locus "PRIMA41_Xq26.3b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0178"; repClass "LTR"; repEnd "5045"; repFamily "ERV1"; repLeft "4583"; repStart "-2711"; ### ERVLE_Xq26.3i ### chrX rmsk gene 135932504 135935856 . + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3750"; model_cov "2795"; model_pct "49.3"; chrX rmsk exon 135932504 135933591 3184 + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3750"; repClass "LTR"; repEnd "1337"; repFamily "ERVL"; repLeft "-4330"; repStart "238"; chrX rmsk exon 135933617 135934212 2335 + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3750"; repClass "LTR"; repEnd "2349"; repFamily "ERVL"; repLeft "-3318"; repStart "1753"; chrX rmsk exon 135934431 135935044 1562 + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3750"; repClass "LTR"; repEnd "3038"; repFamily "ERVL"; repLeft "-2629"; repStart "2398"; chrX rmsk exon 135935042 135935154 444 + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3750"; repClass "LTR"; repEnd "3613"; repFamily "ERVL"; repLeft "-2054"; repStart "3502"; chrX rmsk exon 135935511 135935856 1458 + . gene_id "ERVLE_Xq26.3i"; transcript_id "ERVLE_Xq26.3i"; locus "ERVLE_Xq26.3i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3750"; repClass "LTR"; repEnd "4420"; repFamily "ERVL"; repLeft "-1247"; repStart "4071"; ### ERVLE_Xq26.3j ### chrX rmsk gene 135941877 135942764 . + . gene_id "ERVLE_Xq26.3j"; transcript_id "ERVLE_Xq26.3j"; locus "ERVLE_Xq26.3j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3751"; model_cov "882"; model_pct "15.6"; chrX rmsk exon 135941877 135942764 3141 + . gene_id "ERVLE_Xq26.3j"; transcript_id "ERVLE_Xq26.3j"; locus "ERVLE_Xq26.3j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3751"; repClass "LTR"; repEnd "5280"; repFamily "ERVL"; repLeft "-387"; repStart "4398"; ### HERVL_Xq26.3b ### chrX rmsk gene 136381626 136383069 . - . gene_id "HERVL_Xq26.3b"; transcript_id "HERVL_Xq26.3b"; locus "HERVL_Xq26.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1401"; model_cov "968"; model_pct "17.1"; chrX rmsk exon 136381626 136382107 3062 - . gene_id "HERVL_Xq26.3b"; transcript_id "HERVL_Xq26.3b"; locus "HERVL_Xq26.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1401"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 136382108 136383069 7816 - . gene_id "HERVL_Xq26.3b"; transcript_id "HERVL_Xq26.3b"; locus "HERVL_Xq26.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1401"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4686"; repStart "0"; ### ERVLB4_Xq26.3y ### chrX rmsk gene 136821347 136826832 . + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1930"; model_cov "4216"; model_pct "73.8"; chrX rmsk exon 136821347 136822203 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "1374"; repFamily "ERVL"; repLeft "-4340"; repStart "456"; chrX rmsk exon 136822517 136822529 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "1382"; repFamily "ERVL"; repLeft "-4332"; repStart "1375"; chrX rmsk exon 136822661 136823660 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "-3342"; repStart "1383"; chrX rmsk exon 136823948 136824887 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "-2376"; repStart "2373"; chrX rmsk exon 136825184 136826450 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "4600"; repFamily "ERVL"; repLeft "-1114"; repStart "3339"; chrX rmsk exon 136826749 136826832 5500 + . gene_id "ERVLB4_Xq26.3y"; transcript_id "ERVLB4_Xq26.3y"; locus "ERVLB4_Xq26.3y"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1930"; repClass "LTR"; repEnd "4677"; repFamily "ERVL"; repLeft "-1037"; repStart "4601"; ### ERV316A3_Xq26.3a ### chrX rmsk gene 136827470 136828656 . + . gene_id "ERV316A3_Xq26.3a"; transcript_id "ERV316A3_Xq26.3a"; locus "ERV316A3_Xq26.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2828"; model_cov "753"; model_pct "14.4"; chrX rmsk exon 136827470 136828224 2003 + . gene_id "ERV316A3_Xq26.3a"; transcript_id "ERV316A3_Xq26.3a"; locus "ERV316A3_Xq26.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2828"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4473"; chrX rmsk exon 136828225 136828656 670 + . gene_id "ERV316A3_Xq26.3a"; transcript_id "ERV316A3_Xq26.3a"; locus "ERV316A3_Xq26.3a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2828"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-17"; repStart "1"; ### HERV3_Xq26.3 ### chrX rmsk gene 136931323 136936168 . - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0083"; model_cov "3966"; model_pct "47.1"; chrX rmsk exon 136931323 136931916 1978 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "8424"; repFamily "ERV1"; repLeft "7727"; repStart "-2"; chrX rmsk exon 136931945 136932057 1565 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "7113"; repFamily "ERV1"; repLeft "7012"; repStart "-1313"; chrX rmsk exon 136932114 136933272 6297 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "6313"; repFamily "ERV1"; repLeft "5135"; repStart "-2113"; chrX rmsk exon 136933422 136933764 1594 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "2414"; repFamily "ERV1"; repLeft "2069"; repStart "-6012"; chrX rmsk exon 136934013 136934088 480 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "2085"; repFamily "ERV1"; repLeft "2010"; repStart "-6341"; chrX rmsk exon 136934160 136934359 1145 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "1920"; repFamily "ERV1"; repLeft "1721"; repStart "-6506"; chrX rmsk exon 136934729 136935477 4063 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "1481"; repFamily "ERV1"; repLeft "721"; repStart "-6945"; chrX rmsk exon 136935479 136936168 3181 - . gene_id "HERV3_Xq26.3"; transcript_id "HERV3_Xq26.3"; locus "HERV3_Xq26.3"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0083"; repClass "LTR"; repEnd "2142"; repFamily "ERV1"; repLeft "1531"; repStart "-6284"; ### ERV316A3_Xq26.3b ### chrX rmsk gene 137938665 137941674 . + . gene_id "ERV316A3_Xq26.3b"; transcript_id "ERV316A3_Xq26.3b"; locus "ERV316A3_Xq26.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2829"; model_cov "2374"; model_pct "45.4"; chrX rmsk exon 137938665 137939075 1061 + . gene_id "ERV316A3_Xq26.3b"; transcript_id "ERV316A3_Xq26.3b"; locus "ERV316A3_Xq26.3b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2829"; repClass "LTR"; repEnd "418"; repFamily "ERVL"; repLeft "-20"; repStart "1"; chrX rmsk exon 137939107 137939819 3163 + . gene_id "ERV316A3_Xq26.3b"; transcript_id "ERV316A3_Xq26.3b"; locus "ERV316A3_Xq26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2829"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "-4298"; repStart "234"; chrX rmsk exon 137939972 137941674 3375 + . gene_id "ERV316A3_Xq26.3b"; transcript_id "ERV316A3_Xq26.3b"; locus "ERV316A3_Xq26.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2829"; repClass "LTR"; repEnd "2362"; repFamily "ERVL"; repLeft "-2864"; repStart "682"; ### LTR57_Xq26.3 ### chrX rmsk gene 138124506 138127818 . - . gene_id "LTR57_Xq26.3"; transcript_id "LTR57_Xq26.3"; locus "LTR57_Xq26.3"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0202"; model_cov "2977"; model_pct "55.7"; chrX rmsk exon 138124506 138126227 11041 - . gene_id "LTR57_Xq26.3"; transcript_id "LTR57_Xq26.3"; locus "LTR57_Xq26.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0202"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "1212"; repStart "-2412"; chrX rmsk exon 138126241 138127507 7254 - . gene_id "LTR57_Xq26.3"; transcript_id "LTR57_Xq26.3"; locus "LTR57_Xq26.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0202"; repClass "LTR"; repEnd "1260"; repFamily "ERVL"; repLeft "2"; repStart "-4083"; chrX rmsk exon 138127509 138127818 1796 - . gene_id "LTR57_Xq26.3"; transcript_id "LTR57_Xq26.3"; locus "LTR57_Xq26.3"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0202"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "101"; repStart "0"; ### ERVLE_Xq26.3k ### chrX rmsk gene 138139181 138141495 . - . gene_id "ERVLE_Xq26.3k"; transcript_id "ERVLE_Xq26.3k"; locus "ERVLE_Xq26.3k"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3753"; model_cov "2207"; model_pct "38.9"; chrX rmsk exon 138139181 138139297 991 - . gene_id "ERVLE_Xq26.3k"; transcript_id "ERVLE_Xq26.3k"; locus "ERVLE_Xq26.3k"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3753"; repClass "LTR"; repEnd "518"; repFamily "ERVL"; repLeft "401"; repStart "-145"; chrX rmsk exon 138139331 138139426 326 - . gene_id "ERVLE_Xq26.3k"; transcript_id "ERVLE_Xq26.3k"; locus "ERVLE_Xq26.3k"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3753"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "350"; repStart "-218"; chrX rmsk exon 138139435 138140969 6396 - . gene_id "ERVLE_Xq26.3k"; transcript_id "ERVLE_Xq26.3k"; locus "ERVLE_Xq26.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3753"; repClass "LTR"; repEnd "4466"; repFamily "ERVL"; repLeft "2888"; repStart "-1201"; chrX rmsk exon 138140981 138141495 1662 - . gene_id "ERVLE_Xq26.3k"; transcript_id "ERVLE_Xq26.3k"; locus "ERVLE_Xq26.3k"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3753"; repClass "LTR"; repEnd "2436"; repFamily "ERVL"; repLeft "1807"; repStart "-3231"; ### HERVH_Xq26.3a ### chrX rmsk gene 138258661 138264347 . + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1291"; model_cov "4911"; model_pct "63.7"; chrX rmsk exon 138258661 138259059 3008 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 138259062 138262205 16256 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrX rmsk exon 138262200 138262347 861 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 138262338 138262845 3416 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "3999"; repFamily "ERV1"; repLeft "-3714"; repStart "3492"; chrX rmsk exon 138262844 138263503 4561 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chrX rmsk exon 138263508 138263724 1430 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 138263723 138264101 2458 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrX rmsk exon 138264102 138264347 1557 + . gene_id "HERVH_Xq26.3a"; transcript_id "HERVH_Xq26.3a"; locus "HERVH_Xq26.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1291"; repClass "LTR"; repEnd "284"; repFamily "ERV1"; repLeft "-166"; repStart "1"; ### HERVH_Xq26.3b ### chrX rmsk gene 138264358 138270335 . - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1292"; model_cov "4911"; model_pct "63.7"; chrX rmsk exon 138264358 138264754 2772 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 138264755 138265134 2471 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 138265133 138265349 1356 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 138265354 138266011 4406 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chrX rmsk exon 138266010 138266516 3533 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "3999"; repFamily "ERV1"; repLeft "3492"; repStart "-3714"; chrX rmsk exon 138266507 138266654 846 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrX rmsk exon 138266649 138269630 20076 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrX rmsk exon 138269633 138270033 2768 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 138270034 138270335 1920 - . gene_id "HERVH_Xq26.3b"; transcript_id "HERVH_Xq26.3b"; locus "HERVH_Xq26.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1292"; repClass "LTR"; repEnd "344"; repFamily "ERV1"; repLeft "1"; repStart "-106"; ### ERV316A3_Xq26.3c ### chrX rmsk gene 138330638 138334582 . - . gene_id "ERV316A3_Xq26.3c"; transcript_id "ERV316A3_Xq26.3c"; locus "ERV316A3_Xq26.3c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2830"; model_cov "2782"; model_pct "53.2"; chrX rmsk exon 138330638 138332433 4287 - . gene_id "ERV316A3_Xq26.3c"; transcript_id "ERV316A3_Xq26.3c"; locus "ERV316A3_Xq26.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2830"; repClass "LTR"; repEnd "5081"; repFamily "ERVL"; repLeft "3238"; repStart "-145"; chrX rmsk exon 138332689 138333486 2377 - . gene_id "ERV316A3_Xq26.3c"; transcript_id "ERV316A3_Xq26.3c"; locus "ERV316A3_Xq26.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2830"; repClass "LTR"; repEnd "2796"; repFamily "ERVL"; repLeft "1975"; repStart "-2430"; chrX rmsk exon 138334455 138334582 2377 - . gene_id "ERV316A3_Xq26.3c"; transcript_id "ERV316A3_Xq26.3c"; locus "ERV316A3_Xq26.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2830"; repClass "LTR"; repEnd "1974"; repFamily "ERVL"; repLeft "1856"; repStart "-3252"; ### ERV316A3_Xq26.3d ### chrX rmsk gene 138433851 138434964 . - . gene_id "ERV316A3_Xq26.3d"; transcript_id "ERV316A3_Xq26.3d"; locus "ERV316A3_Xq26.3d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2831"; model_cov "1154"; model_pct "22.1"; chrX rmsk exon 138433851 138434964 3539 - . gene_id "ERV316A3_Xq26.3d"; transcript_id "ERV316A3_Xq26.3d"; locus "ERV316A3_Xq26.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2831"; repClass "LTR"; repEnd "1405"; repFamily "ERVL"; repLeft "251"; repStart "-3821"; ### HERVL_Xq27.1a ### chrX rmsk gene 139396228 139402644 . + . gene_id "HERVL_Xq27.1a"; transcript_id "HERVL_Xq27.1a"; locus "HERVL_Xq27.1a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1403"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 139396228 139396670 3257 + . gene_id "HERVL_Xq27.1a"; transcript_id "HERVL_Xq27.1a"; locus "HERVL_Xq27.1a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1403"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 139396671 139397799 42903 + . gene_id "HERVL_Xq27.1a"; transcript_id "HERVL_Xq27.1a"; locus "HERVL_Xq27.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1403"; repClass "LTR"; repEnd "1183"; repFamily "ERVL"; repLeft "-4471"; repStart "1"; chrX rmsk exon 139398176 139402644 42903 + . gene_id "HERVL_Xq27.1a"; transcript_id "HERVL_Xq27.1a"; locus "HERVL_Xq27.1a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1403"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1184"; ### ERV316A3_Xq27.1a ### chrX rmsk gene 139405275 139407675 . + . gene_id "ERV316A3_Xq27.1a"; transcript_id "ERV316A3_Xq27.1a"; locus "ERV316A3_Xq27.1a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2832"; model_cov "1903"; model_pct "36.4"; chrX rmsk exon 139405275 139405669 638 + . gene_id "ERV316A3_Xq27.1a"; transcript_id "ERV316A3_Xq27.1a"; locus "ERV316A3_Xq27.1a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2832"; repClass "LTR"; repEnd "430"; repFamily "ERVL"; repLeft "-21"; repStart "49"; chrX rmsk exon 139405692 139405848 532 + . gene_id "ERV316A3_Xq27.1a"; transcript_id "ERV316A3_Xq27.1a"; locus "ERV316A3_Xq27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2832"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-4834"; repStart "233"; chrX rmsk exon 139405925 139407675 4917 + . gene_id "ERV316A3_Xq27.1a"; transcript_id "ERV316A3_Xq27.1a"; locus "ERV316A3_Xq27.1a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2832"; repClass "LTR"; repEnd "2327"; repFamily "ERVL"; repLeft "-2899"; repStart "583"; ### ERV316A3_Xq27.1b ### chrX rmsk gene 139414851 139418884 . + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2833"; model_cov "2838"; model_pct "54.3"; chrX rmsk exon 139414851 139414987 7681 + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2833"; repClass "LTR"; repEnd "2456"; repFamily "ERVL"; repLeft "-2770"; repStart "2311"; chrX rmsk exon 139415035 139416509 7681 + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2833"; repClass "LTR"; repEnd "3948"; repFamily "ERVL"; repLeft "-1278"; repStart "2457"; chrX rmsk exon 139416871 139417477 7681 + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2833"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "-689"; repStart "3949"; chrX rmsk exon 139417871 139418423 7681 + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2833"; repClass "LTR"; repEnd "5152"; repFamily "ERVL"; repLeft "-74"; repStart "4538"; chrX rmsk exon 139418499 139418884 404 + . gene_id "ERV316A3_Xq27.1b"; transcript_id "ERV316A3_Xq27.1b"; locus "ERV316A3_Xq27.1b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2833"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "0"; repStart "4"; ### HERVIP10FH_Xq27.1 ### chrX rmsk gene 139852178 139857785 . + . gene_id "HERVIP10FH_Xq27.1"; transcript_id "HERVIP10FH_Xq27.1"; locus "HERVIP10FH_Xq27.1"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0213"; model_cov "7733"; model_pct "100.0"; chrX rmsk exon 139852178 139852310 879 + . gene_id "HERVIP10FH_Xq27.1"; transcript_id "HERVIP10FH_Xq27.1"; locus "HERVIP10FH_Xq27.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0213"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "381"; chrX rmsk exon 139852311 139852452 1614 + . gene_id "HERVIP10FH_Xq27.1"; transcript_id "HERVIP10FH_Xq27.1"; locus "HERVIP10FH_Xq27.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0213"; repClass "LTR"; repEnd "158"; repFamily "ERV1"; repLeft "-4944"; repStart "1"; chrX rmsk exon 139852482 139857325 19755 + . gene_id "HERVIP10FH_Xq27.1"; transcript_id "HERVIP10FH_Xq27.1"; locus "HERVIP10FH_Xq27.1"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0213"; repClass "LTR"; repEnd "5098"; repFamily "ERV1"; repLeft "-4"; repStart "-2478"; chrX rmsk exon 139857329 139857785 2879 + . gene_id "HERVIP10FH_Xq27.1"; transcript_id "HERVIP10FH_Xq27.1"; locus "HERVIP10FH_Xq27.1"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0213"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "-48"; repStart "1"; ### ERVLE_Xq27.1 ### chrX rmsk gene 139943782 139944632 . - . gene_id "ERVLE_Xq27.1"; transcript_id "ERVLE_Xq27.1"; locus "ERVLE_Xq27.1"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3754"; model_cov "599"; model_pct "10.6"; chrX rmsk exon 139943782 139944170 1655 - . gene_id "ERVLE_Xq27.1"; transcript_id "ERVLE_Xq27.1"; locus "ERVLE_Xq27.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3754"; repClass "LTR"; repEnd "3820"; repFamily "ERVL"; repLeft "3429"; repStart "-1847"; chrX rmsk exon 139944448 139944632 1655 - . gene_id "ERVLE_Xq27.1"; transcript_id "ERVLE_Xq27.1"; locus "ERVLE_Xq27.1"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3754"; repClass "LTR"; repEnd "3440"; repFamily "ERVL"; repLeft "3232"; repStart "-2227"; ### ERV316A3_Xq27.1c ### chrX rmsk gene 139995166 139996414 . + . gene_id "ERV316A3_Xq27.1c"; transcript_id "ERV316A3_Xq27.1c"; locus "ERV316A3_Xq27.1c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2836"; model_cov "702"; model_pct "13.4"; chrX rmsk exon 139995166 139995334 1990 + . gene_id "ERV316A3_Xq27.1c"; transcript_id "ERV316A3_Xq27.1c"; locus "ERV316A3_Xq27.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2836"; repClass "LTR"; repEnd "4793"; repFamily "ERVL"; repLeft "-433"; repStart "4632"; chrX rmsk exon 139995645 139996046 1990 + . gene_id "ERV316A3_Xq27.1c"; transcript_id "ERV316A3_Xq27.1c"; locus "ERV316A3_Xq27.1c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2836"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4635"; chrX rmsk exon 139996057 139996414 792 + . gene_id "ERV316A3_Xq27.1c"; transcript_id "ERV316A3_Xq27.1c"; locus "ERV316A3_Xq27.1c"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2836"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### HERVW_Xq27.1 ### chrX rmsk gene 140077596 140080821 . + . gene_id "HERVW_Xq27.1"; transcript_id "HERVW_Xq27.1"; locus "HERVW_Xq27.1"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0322"; model_cov "2946"; model_pct "34.2"; chrX rmsk exon 140077596 140079392 14796 + . gene_id "HERVW_Xq27.1"; transcript_id "HERVW_Xq27.1"; locus "HERVW_Xq27.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0322"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4185"; chrX rmsk exon 140079385 140080491 9206 + . gene_id "HERVW_Xq27.1"; transcript_id "HERVW_Xq27.1"; locus "HERVW_Xq27.1"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0322"; repClass "LTR"; repEnd "8621"; repFamily "ERV1"; repLeft "-5"; repStart "7509"; chrX rmsk exon 140080496 140080821 2843 + . gene_id "HERVW_Xq27.1"; transcript_id "HERVW_Xq27.1"; locus "HERVW_Xq27.1"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0322"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### HERVL_Xq27.1b ### chrX rmsk gene 140255030 140261622 . - . gene_id "HERVL_Xq27.1b"; transcript_id "HERVL_Xq27.1b"; locus "HERVL_Xq27.1b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1404"; model_cov "5653"; model_pct "100.0"; chrX rmsk exon 140255030 140255471 3205 - . gene_id "HERVL_Xq27.1b"; transcript_id "HERVL_Xq27.1b"; locus "HERVL_Xq27.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1404"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 140255472 140261125 42542 - . gene_id "HERVL_Xq27.1b"; transcript_id "HERVL_Xq27.1b"; locus "HERVL_Xq27.1b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1404"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 140261130 140261622 2783 - . gene_id "HERVL_Xq27.1b"; transcript_id "HERVL_Xq27.1b"; locus "HERVL_Xq27.1b"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1404"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-101"; repStart "-8"; ### ERV316A3_Xq27.1d ### chrX rmsk gene 140665782 140666889 . - . gene_id "ERV316A3_Xq27.1d"; transcript_id "ERV316A3_Xq27.1d"; locus "ERV316A3_Xq27.1d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2838"; model_cov "1209"; model_pct "23.1"; chrX rmsk exon 140665782 140665894 557 - . gene_id "ERV316A3_Xq27.1d"; transcript_id "ERV316A3_Xq27.1d"; locus "ERV316A3_Xq27.1d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2838"; repClass "LTR"; repEnd "117"; repFamily "ERVL"; repLeft "5"; repStart "-345"; chrX rmsk exon 140665899 140666258 1288 - . gene_id "ERV316A3_Xq27.1d"; transcript_id "ERV316A3_Xq27.1d"; locus "ERV316A3_Xq27.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2838"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4649"; repStart "0"; chrX rmsk exon 140666298 140666889 1821 - . gene_id "ERV316A3_Xq27.1d"; transcript_id "ERV316A3_Xq27.1d"; locus "ERV316A3_Xq27.1d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2838"; repClass "LTR"; repEnd "4475"; repFamily "ERVL"; repLeft "3843"; repStart "-751"; ### ERV316A3_Xq27.1e ### chrX rmsk gene 140672540 140673956 . - . gene_id "ERV316A3_Xq27.1e"; transcript_id "ERV316A3_Xq27.1e"; locus "ERV316A3_Xq27.1e"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2839"; model_cov "1129"; model_pct "21.6"; chrX rmsk exon 140672540 140673687 2569 - . gene_id "ERV316A3_Xq27.1e"; transcript_id "ERV316A3_Xq27.1e"; locus "ERV316A3_Xq27.1e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2839"; repClass "LTR"; repEnd "1134"; repFamily "ERVL"; repLeft "5"; repStart "-4092"; chrX rmsk exon 140673688 140673956 824 - . gene_id "ERV316A3_Xq27.1e"; transcript_id "ERV316A3_Xq27.1e"; locus "ERV316A3_Xq27.1e"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2839"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "155"; repStart "0"; ### HUERSP3_Xq27.1 ### chrX rmsk gene 140817246 140821786 . - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0234"; model_cov "2828"; model_pct "31.7"; chrX rmsk exon 140817246 140817846 2929 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "638"; repFamily "ERV1"; repLeft "7"; repStart "-6"; chrX rmsk exon 140817855 140817949 558 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "8822"; repStart "-3"; chrX rmsk exon 140817931 140818048 414 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "8774"; repFamily "ERV1"; repLeft "8656"; repStart "-145"; chrX rmsk exon 140818550 140819302 4026 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "8434"; repFamily "ERV1"; repLeft "7663"; repStart "-485"; chrX rmsk exon 140819293 140819917 4096 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "5571"; repFamily "ERV1"; repLeft "4901"; repStart "-3348"; chrX rmsk exon 140819918 140820062 803 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "4683"; repFamily "ERV1"; repLeft "4539"; repStart "-4236"; chrX rmsk exon 140820056 140820932 5754 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "2403"; repStart "-5635"; chrX rmsk exon 140820919 140821070 642 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "590"; repFamily "ERV1"; repLeft "440"; repStart "-8329"; chrX rmsk exon 140821173 140821786 2976 - . gene_id "HUERSP3_Xq27.1"; transcript_id "HUERSP3_Xq27.1"; locus "HUERSP3_Xq27.1"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0234"; repClass "LTR"; repEnd "640"; repFamily "ERV1"; repLeft "7"; repStart "-4"; ### MER41_Xq27.1a ### chrX rmsk gene 140895025 140900915 . - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0625"; model_cov "4876"; model_pct "82.0"; chrX rmsk exon 140895025 140895576 4388 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0625"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "1"; repStart "-4"; chrX rmsk exon 140895577 140895644 12088 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "5942"; repFamily "ERV1"; repLeft "5882"; repStart "-4"; chrX rmsk exon 140895944 140898445 12088 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "5881"; repFamily "ERV1"; repLeft "2565"; repStart "-65"; chrX rmsk exon 140898444 140899006 3012 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "2187"; repFamily "ERV1"; repLeft "1648"; repStart "-3759"; chrX rmsk exon 140899270 140899339 3012 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "1647"; repFamily "ERV1"; repLeft "1608"; repStart "-4299"; chrX rmsk exon 140899369 140899630 2170 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "1357"; repFamily "ERV1"; repLeft "1083"; repStart "-4589"; chrX rmsk exon 140899618 140900281 3834 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0625"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "1"; repStart "-5297"; chrX rmsk exon 140900367 140900915 4546 - . gene_id "MER41_Xq27.1a"; transcript_id "MER41_Xq27.1a"; locus "MER41_Xq27.1a"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0625"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_Xq27.1b ### chrX rmsk gene 140922796 140924316 . - . gene_id "MER41_Xq27.1b"; transcript_id "MER41_Xq27.1b"; locus "MER41_Xq27.1b"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0626"; model_cov "992"; model_pct "16.7"; chrX rmsk exon 140922796 140923339 3972 - . gene_id "MER41_Xq27.1b"; transcript_id "MER41_Xq27.1b"; locus "MER41_Xq27.1b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0626"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chrX rmsk exon 140923340 140924316 6630 - . gene_id "MER41_Xq27.1b"; transcript_id "MER41_Xq27.1b"; locus "MER41_Xq27.1b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0626"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "4952"; repStart "-2"; ### ERV316A3_Xq27.1f ### chrX rmsk gene 140962046 140964235 . + . gene_id "ERV316A3_Xq27.1f"; transcript_id "ERV316A3_Xq27.1f"; locus "ERV316A3_Xq27.1f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2840"; model_cov "1887"; model_pct "36.1"; chrX rmsk exon 140962046 140962547 4398 + . gene_id "ERV316A3_Xq27.1f"; transcript_id "ERV316A3_Xq27.1f"; locus "ERV316A3_Xq27.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2840"; repClass "LTR"; repEnd "998"; repFamily "ERVL"; repLeft "-4228"; repStart "436"; chrX rmsk exon 140962892 140964235 4398 + . gene_id "ERV316A3_Xq27.1f"; transcript_id "ERV316A3_Xq27.1f"; locus "ERV316A3_Xq27.1f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2840"; repClass "LTR"; repEnd "2324"; repFamily "ERVL"; repLeft "-2902"; repStart "999"; ### MER4_Xq27.1a ### chrX rmsk gene 140996209 140999680 . + . gene_id "MER4_Xq27.1a"; transcript_id "MER4_Xq27.1a"; locus "MER4_Xq27.1a"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0933"; model_cov "2496"; model_pct "37.8"; chrX rmsk exon 140996209 140996307 2705 + . gene_id "MER4_Xq27.1a"; transcript_id "MER4_Xq27.1a"; locus "MER4_Xq27.1a"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0933"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "0"; repStart "566"; chrX rmsk exon 140996312 140997384 2210 + . gene_id "MER4_Xq27.1a"; transcript_id "MER4_Xq27.1a"; locus "MER4_Xq27.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0933"; repClass "LTR"; repEnd "1182"; repFamily "ERV1"; repLeft "-5416"; repStart "2"; chrX rmsk exon 140997930 140999680 4604 + . gene_id "MER4_Xq27.1a"; transcript_id "MER4_Xq27.1a"; locus "MER4_Xq27.1a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0933"; repClass "LTR"; repEnd "2298"; repFamily "ERV1"; repLeft "-4300"; repStart "982"; ### MER4_Xq27.1b ### chrX rmsk gene 140999977 141001661 . + . gene_id "MER4_Xq27.1b"; transcript_id "MER4_Xq27.1b"; locus "MER4_Xq27.1b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0934"; model_cov "1729"; model_pct "26.2"; chrX rmsk exon 140999977 141000000 1855 + . gene_id "MER4_Xq27.1b"; transcript_id "MER4_Xq27.1b"; locus "MER4_Xq27.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0934"; repClass "LTR"; repEnd "2021"; repFamily "ERV1"; repLeft "-4577"; repStart "2005"; chrX rmsk exon 141000026 141000339 1226 + . gene_id "MER4_Xq27.1b"; transcript_id "MER4_Xq27.1b"; locus "MER4_Xq27.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0934"; repClass "LTR"; repEnd "3628"; repFamily "ERV1"; repLeft "-2970"; repStart "3315"; chrX rmsk exon 141000616 141001661 4784 + . gene_id "MER4_Xq27.1b"; transcript_id "MER4_Xq27.1b"; locus "MER4_Xq27.1b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0934"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-1569"; repStart "3629"; ### LTR19_Xq27.1 ### chrX rmsk gene 141010501 141014779 . + . gene_id "LTR19_Xq27.1"; transcript_id "LTR19_Xq27.1"; locus "LTR19_Xq27.1"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0065"; model_cov "5184"; model_pct "92.8"; chrX rmsk exon 141010501 141010745 1329 + . gene_id "LTR19_Xq27.1"; transcript_id "LTR19_Xq27.1"; locus "LTR19_Xq27.1"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0065"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "-226"; repStart "1"; chrX rmsk exon 141010991 141014071 13891 + . gene_id "LTR19_Xq27.1"; transcript_id "LTR19_Xq27.1"; locus "LTR19_Xq27.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0065"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "-327"; repStart "785"; chrX rmsk exon 141014071 141014779 4820 + . gene_id "LTR19_Xq27.1"; transcript_id "LTR19_Xq27.1"; locus "LTR19_Xq27.1"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0065"; repClass "LTR"; repEnd "5534"; repFamily "ERV1"; repLeft "-52"; repStart "4824"; ### HML6_Xq27.1 ### chrX rmsk gene 141196490 141199480 . - . gene_id "HML6_Xq27.1"; transcript_id "HML6_Xq27.1"; locus "HML6_Xq27.1"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0102"; model_cov "2623"; model_pct "36.4"; chrX rmsk exon 141196490 141199042 15759 - . gene_id "HML6_Xq27.1"; transcript_id "HML6_Xq27.1"; locus "HML6_Xq27.1"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0102"; repClass "LTR"; repEnd "2624"; repFamily "ERVK"; repLeft "1"; repStart "-4578"; chrX rmsk exon 141199051 141199480 2670 - . gene_id "HML6_Xq27.1"; transcript_id "HML6_Xq27.1"; locus "HML6_Xq27.1"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0102"; repClass "LTR"; repEnd "433"; repFamily "ERVK"; repLeft "1"; repStart "-4"; ### LTR19_Xq27.2a ### chrX rmsk gene 141231382 141235224 . - . gene_id "LTR19_Xq27.2a"; transcript_id "LTR19_Xq27.2a"; locus "LTR19_Xq27.2a"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0066"; model_cov "3867"; model_pct "69.2"; chrX rmsk exon 141231382 141232090 4814 - . gene_id "LTR19_Xq27.2a"; transcript_id "LTR19_Xq27.2a"; locus "LTR19_Xq27.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0066"; repClass "LTR"; repEnd "5534"; repFamily "ERV1"; repLeft "4824"; repStart "-52"; chrX rmsk exon 141232090 141235224 18869 - . gene_id "LTR19_Xq27.2a"; transcript_id "LTR19_Xq27.2a"; locus "LTR19_Xq27.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0066"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "1462"; repStart "-967"; ### MER4_Xq27.2a ### chrX rmsk gene 141243490 141245174 . - . gene_id "MER4_Xq27.2a"; transcript_id "MER4_Xq27.2a"; locus "MER4_Xq27.2a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0935"; model_cov "1656"; model_pct "25.1"; chrX rmsk exon 141243490 141244539 4813 - . gene_id "MER4_Xq27.2a"; transcript_id "MER4_Xq27.2a"; locus "MER4_Xq27.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0935"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "3629"; repStart "-1569"; chrX rmsk exon 141244813 141245174 2400 - . gene_id "MER4_Xq27.2a"; transcript_id "MER4_Xq27.2a"; locus "MER4_Xq27.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0935"; repClass "LTR"; repEnd "2256"; repFamily "ERV1"; repLeft "2000"; repStart "-4342"; ### MER4_Xq27.2b ### chrX rmsk gene 141245474 141248919 . - . gene_id "MER4_Xq27.2b"; transcript_id "MER4_Xq27.2b"; locus "MER4_Xq27.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0936"; model_cov "2492"; model_pct "37.8"; chrX rmsk exon 141245474 141247207 4470 - . gene_id "MER4_Xq27.2b"; transcript_id "MER4_Xq27.2b"; locus "MER4_Xq27.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0936"; repClass "LTR"; repEnd "2294"; repFamily "ERV1"; repLeft "982"; repStart "-4304"; chrX rmsk exon 141247753 141248816 2266 - . gene_id "MER4_Xq27.2b"; transcript_id "MER4_Xq27.2b"; locus "MER4_Xq27.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0936"; repClass "LTR"; repEnd "1182"; repFamily "ERV1"; repLeft "2"; repStart "-5416"; chrX rmsk exon 141248821 141248919 721 - . gene_id "MER4_Xq27.2b"; transcript_id "MER4_Xq27.2b"; locus "MER4_Xq27.2b"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0936"; repClass "LTR"; repEnd "664"; repFamily "ERV1"; repLeft "566"; repStart "0"; ### LTR19_Xq27.2b ### chrX rmsk gene 141572611 141576889 . - . gene_id "LTR19_Xq27.2b"; transcript_id "LTR19_Xq27.2b"; locus "LTR19_Xq27.2b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0067"; model_cov "5184"; model_pct "92.8"; chrX rmsk exon 141572611 141573319 4820 - . gene_id "LTR19_Xq27.2b"; transcript_id "LTR19_Xq27.2b"; locus "LTR19_Xq27.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0067"; repClass "LTR"; repEnd "5534"; repFamily "ERV1"; repLeft "4824"; repStart "-52"; chrX rmsk exon 141573319 141576399 13870 - . gene_id "LTR19_Xq27.2b"; transcript_id "LTR19_Xq27.2b"; locus "LTR19_Xq27.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0067"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "785"; repStart "-327"; chrX rmsk exon 141576645 141576889 1329 - . gene_id "LTR19_Xq27.2b"; transcript_id "LTR19_Xq27.2b"; locus "LTR19_Xq27.2b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0067"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "1"; repStart "-226"; ### MER4_Xq27.2c ### chrX rmsk gene 141585274 141586746 . + . gene_id "MER4_Xq27.2c"; transcript_id "MER4_Xq27.2c"; locus "MER4_Xq27.2c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0937"; model_cov "1503"; model_pct "22.8"; chrX rmsk exon 141585274 141586746 4062 + . gene_id "MER4_Xq27.2c"; transcript_id "MER4_Xq27.2c"; locus "MER4_Xq27.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0937"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "982"; ### MER4_Xq27.2d ### chrX rmsk gene 141587046 141588740 . + . gene_id "MER4_Xq27.2d"; transcript_id "MER4_Xq27.2d"; locus "MER4_Xq27.2d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0938"; model_cov "1656"; model_pct "25.1"; chrX rmsk exon 141587046 141587407 2397 + . gene_id "MER4_Xq27.2d"; transcript_id "MER4_Xq27.2d"; locus "MER4_Xq27.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0938"; repClass "LTR"; repEnd "2256"; repFamily "ERV1"; repLeft "-4342"; repStart "2000"; chrX rmsk exon 141587689 141588740 4772 + . gene_id "MER4_Xq27.2d"; transcript_id "MER4_Xq27.2d"; locus "MER4_Xq27.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0938"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "-1569"; repStart "3629"; ### LTR19_Xq27.2c ### chrX rmsk gene 141597534 141602118 . + . gene_id "LTR19_Xq27.2c"; transcript_id "LTR19_Xq27.2c"; locus "LTR19_Xq27.2c"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0068"; model_cov "3919"; model_pct "70.2"; chrX rmsk exon 141597534 141597778 1340 + . gene_id "LTR19_Xq27.2c"; transcript_id "LTR19_Xq27.2c"; locus "LTR19_Xq27.2c"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0068"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "-226"; repStart "1"; chrX rmsk exon 141598024 141601162 19118 + . gene_id "LTR19_Xq27.2c"; transcript_id "LTR19_Xq27.2c"; locus "LTR19_Xq27.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0068"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "-967"; repStart "1462"; chrX rmsk exon 141601162 141601928 5304 + . gene_id "LTR19_Xq27.2c"; transcript_id "LTR19_Xq27.2c"; locus "LTR19_Xq27.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0068"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "4824"; chrX rmsk exon 141601929 141602118 1074 + . gene_id "LTR19_Xq27.2c"; transcript_id "LTR19_Xq27.2c"; locus "LTR19_Xq27.2c"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0068"; repClass "LTR"; repEnd "206"; repFamily "ERV1"; repLeft "-280"; repStart "1"; ### LTR19_Xq27.2d ### chrX rmsk gene 141686291 141690632 . - . gene_id "LTR19_Xq27.2d"; transcript_id "LTR19_Xq27.2d"; locus "LTR19_Xq27.2d"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0069"; model_cov "3866"; model_pct "69.2"; chrX rmsk exon 141686291 141686999 4796 - . gene_id "LTR19_Xq27.2d"; transcript_id "LTR19_Xq27.2d"; locus "LTR19_Xq27.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0069"; repClass "LTR"; repEnd "5534"; repFamily "ERV1"; repLeft "4824"; repStart "-52"; chrX rmsk exon 141686999 141687817 6347 - . gene_id "LTR19_Xq27.2d"; transcript_id "LTR19_Xq27.2d"; locus "LTR19_Xq27.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0069"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "3802"; repStart "-967"; chrX rmsk exon 141687861 141690143 13864 - . gene_id "LTR19_Xq27.2d"; transcript_id "LTR19_Xq27.2d"; locus "LTR19_Xq27.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0069"; repClass "LTR"; repEnd "3801"; repFamily "ERV1"; repLeft "1462"; repStart "-1785"; chrX rmsk exon 141690389 141690632 1302 - . gene_id "LTR19_Xq27.2d"; transcript_id "LTR19_Xq27.2d"; locus "LTR19_Xq27.2d"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0069"; repClass "LTR"; repEnd "260"; repFamily "ERV1"; repLeft "2"; repStart "-226"; ### MER4_Xq27.2e ### chrX rmsk gene 141699435 141700646 . - . gene_id "MER4_Xq27.2e"; transcript_id "MER4_Xq27.2e"; locus "MER4_Xq27.2e"; category "internal"; intModel "MER4-int"; locid "MER4-int_0939"; model_cov "1255"; model_pct "19.0"; chrX rmsk exon 141699435 141700589 5317 - . gene_id "MER4_Xq27.2e"; transcript_id "MER4_Xq27.2e"; locus "MER4_Xq27.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0939"; repClass "LTR"; repEnd "5029"; repFamily "ERV1"; repLeft "3836"; repStart "-1569"; chrX rmsk exon 141700588 141700646 281 - . gene_id "MER4_Xq27.2e"; transcript_id "MER4_Xq27.2e"; locus "MER4_Xq27.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0939"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "3619"; repStart "-2917"; ### LTR25_Xq27.2 ### chrX rmsk gene 141867617 141873017 . - . gene_id "LTR25_Xq27.2"; transcript_id "LTR25_Xq27.2"; locus "LTR25_Xq27.2"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0159"; model_cov "7063"; model_pct "98.3"; chrX rmsk exon 141867617 141867840 8302 - . gene_id "LTR25_Xq27.2"; transcript_id "LTR25_Xq27.2"; locus "LTR25_Xq27.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0159"; repClass "LTR"; repEnd "6663"; repFamily "ERV1"; repLeft "6452"; repStart "-525"; chrX rmsk exon 141868134 141868849 15476 - . gene_id "LTR25_Xq27.2"; transcript_id "LTR25_Xq27.2"; locus "LTR25_Xq27.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0159"; repClass "LTR"; repEnd "6451"; repFamily "ERV1"; repLeft "5738"; repStart "-737"; chrX rmsk exon 141869184 141873017 15476 - . gene_id "LTR25_Xq27.2"; transcript_id "LTR25_Xq27.2"; locus "LTR25_Xq27.2"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0159"; repClass "LTR"; repEnd "6140"; repFamily "ERV1"; repLeft "1"; repStart "-1048"; ### HERVL_Xq27.2a ### chrX rmsk gene 141884079 141890195 . + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1405"; model_cov "5282"; model_pct "93.4"; chrX rmsk exon 141884079 141884529 3453 + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1405"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 141884530 141884978 3426 + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1405"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-5202"; repStart "1"; chrX rmsk exon 141884977 141885384 30671 + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1405"; repClass "LTR"; repEnd "1132"; repFamily "ERVL"; repLeft "-4522"; repStart "726"; chrX rmsk exon 141885689 141890118 30671 + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1405"; repClass "LTR"; repEnd "5558"; repFamily "ERVL"; repLeft "-96"; repStart "1133"; chrX rmsk exon 141890123 141890195 592 + . gene_id "HERVL_Xq27.2a"; transcript_id "HERVL_Xq27.2a"; locus "HERVL_Xq27.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1405"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "381"; ### MER61_Xq27.2 ### chrX rmsk gene 141934262 141939406 . + . gene_id "MER61_Xq27.2"; transcript_id "MER61_Xq27.2"; locus "MER61_Xq27.2"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0421"; model_cov "4383"; model_pct "84.0"; chrX rmsk exon 141934262 141934684 3257 + . gene_id "MER61_Xq27.2"; transcript_id "MER61_Xq27.2"; locus "MER61_Xq27.2"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0421"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 141934685 141934927 924 + . gene_id "MER61_Xq27.2"; transcript_id "MER61_Xq27.2"; locus "MER61_Xq27.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0421"; repClass "LTR"; repEnd "232"; repFamily "ERV1"; repLeft "-4985"; repStart "1"; chrX rmsk exon 141934906 141934956 28128 + . gene_id "MER61_Xq27.2"; transcript_id "MER61_Xq27.2"; locus "MER61_Xq27.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0421"; repClass "LTR"; repEnd "389"; repFamily "ERV1"; repLeft "-4828"; repStart "344"; chrX rmsk exon 141935268 141939406 28128 + . gene_id "MER61_Xq27.2"; transcript_id "MER61_Xq27.2"; locus "MER61_Xq27.2"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0421"; repClass "LTR"; repEnd "4497"; repFamily "ERV1"; repLeft "-720"; repStart "390"; ### MER4B_Xq27.2a ### chrX rmsk gene 142080807 142086581 . + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0547"; model_cov "3005"; model_pct "44.5"; chrX rmsk exon 142080807 142081522 4820 + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0547"; repClass "LTR"; repEnd "1242"; repFamily "ERV1"; repLeft "-5516"; repStart "464"; chrX rmsk exon 142083824 142084237 4820 + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0547"; repClass "LTR"; repEnd "1741"; repFamily "ERV1"; repLeft "-5017"; repStart "947"; chrX rmsk exon 142084917 142085813 3951 + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0547"; repClass "LTR"; repEnd "2355"; repFamily "ERV1"; repLeft "-4403"; repStart "1742"; chrX rmsk exon 142085814 142086336 2840 + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0547"; repClass "LTR"; repEnd "4535"; repFamily "ERV1"; repLeft "-2223"; repStart "3978"; chrX rmsk exon 142086315 142086581 1701 + . gene_id "MER4B_Xq27.2a"; transcript_id "MER4B_Xq27.2a"; locus "MER4B_Xq27.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0547"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6495"; ### ERV316A3_Xq27.2a ### chrX rmsk gene 142128668 142131298 . - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2842"; model_cov "1827"; model_pct "35.0"; chrX rmsk exon 142128668 142128801 399 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "270"; repFamily "ERVL"; repLeft "136"; repStart "-186"; chrX rmsk exon 142129018 142129943 2482 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "5052"; repFamily "ERVL"; repLeft "4163"; repStart "-174"; chrX rmsk exon 142130064 142130200 252 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "4163"; repFamily "ERVL"; repLeft "4034"; repStart "-1063"; chrX rmsk exon 142130186 142130612 467 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "3587"; repFamily "ERVL"; repLeft "3164"; repStart "-1639"; chrX rmsk exon 142130921 142131024 329 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "2224"; repFamily "ERVL"; repLeft "2124"; repStart "-3002"; chrX rmsk exon 142131025 142131298 675 - . gene_id "ERV316A3_Xq27.2a"; transcript_id "ERV316A3_Xq27.2a"; locus "ERV316A3_Xq27.2a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2842"; repClass "LTR"; repEnd "2429"; repFamily "ERVL"; repLeft "2143"; repStart "-2797"; ### HERVH_Xq27.2a ### chrX rmsk gene 142227427 142233058 . + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1294"; model_cov "5359"; model_pct "69.5"; chrX rmsk exon 142227427 142227459 254 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "LTR7A"; geneRegion "ltr"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "33"; repFamily "ERV1"; repLeft "-417"; repStart "1"; chrX rmsk exon 142227623 142229957 13592 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "460"; chrX rmsk exon 142229952 142232027 7544 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "6423"; repFamily "ERV1"; repLeft "-1290"; repStart "4199"; chrX rmsk exon 142232029 142232248 1305 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrX rmsk exon 142232249 142232626 2330 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrX rmsk exon 142232627 142233058 3406 + . gene_id "HERVH_Xq27.2a"; transcript_id "HERVH_Xq27.2a"; locus "HERVH_Xq27.2a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1294"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVEA_Xq27.2 ### chrX rmsk gene 142265140 142273981 . + . gene_id "HERVEA_Xq27.2"; transcript_id "HERVEA_Xq27.2"; locus "HERVEA_Xq27.2"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0113"; model_cov "7846"; model_pct "100.0"; chrX rmsk exon 142265140 142265630 2892 + . gene_id "HERVEA_Xq27.2"; transcript_id "HERVEA_Xq27.2"; locus "HERVEA_Xq27.2"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0113"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 142265631 142273477 52109 + . gene_id "HERVEA_Xq27.2"; transcript_id "HERVEA_Xq27.2"; locus "HERVEA_Xq27.2"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0113"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 142273478 142273981 2837 + . gene_id "HERVEA_Xq27.2"; transcript_id "HERVEA_Xq27.2"; locus "HERVEA_Xq27.2"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0113"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Xq27.2b ### chrX rmsk gene 142415548 142419524 . + . gene_id "MER4B_Xq27.2b"; transcript_id "MER4B_Xq27.2b"; locus "MER4B_Xq27.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0548"; model_cov "3434"; model_pct "50.8"; chrX rmsk exon 142415548 142418925 15330 + . gene_id "MER4B_Xq27.2b"; transcript_id "MER4B_Xq27.2b"; locus "MER4B_Xq27.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0548"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "3324"; chrX rmsk exon 142418933 142419524 3375 + . gene_id "MER4B_Xq27.2b"; transcript_id "MER4B_Xq27.2b"; locus "MER4B_Xq27.2b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0548"; repClass "LTR"; repEnd "602"; repFamily "ERV1"; repLeft "-8"; repStart "-283"; ### HERVH_Xq27.2b ### chrX rmsk gene 142423376 142428961 . - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1295"; model_cov "4750"; model_pct "61.6"; chrX rmsk exon 142423376 142423787 2717 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 142423788 142424165 2351 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrX rmsk exon 142424164 142424384 1478 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrX rmsk exon 142424386 142425055 4370 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrX rmsk exon 142425065 142425906 5409 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "3982"; repFamily "ERV1"; repLeft "3140"; repStart "-3731"; chrX rmsk exon 142425886 142428091 14750 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "793"; repStart "-4718"; chrX rmsk exon 142428097 142428546 2997 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "1"; repStart "-7277"; chrX rmsk exon 142428549 142428961 2578 - . gene_id "HERVH_Xq27.2b"; transcript_id "HERVH_Xq27.2b"; locus "HERVH_Xq27.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1295"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERV316A3_Xq27.2b ### chrX rmsk gene 142490459 142491962 . - . gene_id "ERV316A3_Xq27.2b"; transcript_id "ERV316A3_Xq27.2b"; locus "ERV316A3_Xq27.2b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2843"; model_cov "1001"; model_pct "19.2"; chrX rmsk exon 142490459 142490871 1065 - . gene_id "ERV316A3_Xq27.2b"; transcript_id "ERV316A3_Xq27.2b"; locus "ERV316A3_Xq27.2b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2843"; repClass "LTR"; repEnd "448"; repFamily "ERVL"; repLeft "16"; repStart "-3"; chrX rmsk exon 142491024 142491962 1612 - . gene_id "ERV316A3_Xq27.2b"; transcript_id "ERV316A3_Xq27.2b"; locus "ERV316A3_Xq27.2b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2843"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "4175"; repStart "-50"; ### ERVLB4_Xq27.2a ### chrX rmsk gene 142728473 142733922 . + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1936"; model_cov "4422"; model_pct "77.4"; chrX rmsk exon 142728473 142728762 4209 + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1936"; repClass "LTR"; repEnd "1574"; repFamily "ERVL"; repLeft "-4140"; repStart "1290"; chrX rmsk exon 142729276 142731057 20809 + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1936"; repClass "LTR"; repEnd "3455"; repFamily "ERVL"; repLeft "-2259"; repStart "1575"; chrX rmsk exon 142731109 142733328 20809 + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1936"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "3456"; chrX rmsk exon 142733329 142733837 2188 + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1936"; repClass "LTR"; repEnd "488"; repFamily "ERVL"; repLeft "-68"; repStart "1"; chrX rmsk exon 142733873 142733922 2188 + . gene_id "ERVLB4_Xq27.2a"; transcript_id "ERVLB4_Xq27.2a"; locus "ERVLB4_Xq27.2a"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1936"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "-8"; repStart "489"; ### ERV316A3_Xq27.2c ### chrX rmsk gene 142738282 142740821 . - . gene_id "ERV316A3_Xq27.2c"; transcript_id "ERV316A3_Xq27.2c"; locus "ERV316A3_Xq27.2c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2844"; model_cov "1230"; model_pct "23.5"; chrX rmsk exon 142738282 142738730 1522 - . gene_id "ERV316A3_Xq27.2c"; transcript_id "ERV316A3_Xq27.2c"; locus "ERV316A3_Xq27.2c"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2844"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 142738731 142739600 2269 - . gene_id "ERV316A3_Xq27.2c"; transcript_id "ERV316A3_Xq27.2c"; locus "ERV316A3_Xq27.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2844"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4351"; repStart "0"; chrX rmsk exon 142739713 142739853 1361 - . gene_id "ERV316A3_Xq27.2c"; transcript_id "ERV316A3_Xq27.2c"; locus "ERV316A3_Xq27.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2844"; repClass "LTR"; repEnd "3084"; repFamily "ERVL"; repLeft "2953"; repStart "-2142"; chrX rmsk exon 142740600 142740821 1361 - . gene_id "ERV316A3_Xq27.2c"; transcript_id "ERV316A3_Xq27.2c"; locus "ERV316A3_Xq27.2c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2844"; repClass "LTR"; repEnd "2952"; repFamily "ERVL"; repLeft "2728"; repStart "-2274"; ### ERVLE_Xq27.2 ### chrX rmsk gene 142741423 142743040 . + . gene_id "ERVLE_Xq27.2"; transcript_id "ERVLE_Xq27.2"; locus "ERVLE_Xq27.2"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3757"; model_cov "1094"; model_pct "19.3"; chrX rmsk exon 142741423 142741663 287 + . gene_id "ERVLE_Xq27.2"; transcript_id "ERVLE_Xq27.2"; locus "ERVLE_Xq27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3757"; repClass "LTR"; repEnd "2135"; repFamily "ERVL"; repLeft "-3532"; repStart "1895"; chrX rmsk exon 142741691 142742043 923 + . gene_id "ERVLE_Xq27.2"; transcript_id "ERVLE_Xq27.2"; locus "ERVLE_Xq27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3757"; repClass "LTR"; repEnd "2582"; repFamily "ERVL"; repLeft "-3085"; repStart "2217"; chrX rmsk exon 142742574 142743040 741 + . gene_id "ERVLE_Xq27.2"; transcript_id "ERVLE_Xq27.2"; locus "ERVLE_Xq27.2"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3757"; repClass "LTR"; repEnd "3725"; repFamily "ERVL"; repLeft "-1942"; repStart "3236"; ### ERV316A3_Xq27.2d ### chrX rmsk gene 142775404 142779934 . + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2845"; model_cov "3428"; model_pct "65.6"; chrX rmsk exon 142775404 142775851 1291 + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2845"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 142775852 142777439 5130 + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2845"; repClass "LTR"; repEnd "1620"; repFamily "ERVL"; repLeft "-3606"; repStart "5"; chrX rmsk exon 142777741 142778362 1523 + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2845"; repClass "LTR"; repEnd "1870"; repFamily "ERVL"; repLeft "-3356"; repStart "1165"; chrX rmsk exon 142778365 142779479 4009 + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2845"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4118"; chrX rmsk exon 142779481 142779934 1300 + . gene_id "ERV316A3_Xq27.2d"; transcript_id "ERV316A3_Xq27.2d"; locus "ERV316A3_Xq27.2d"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2845"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "2"; ### ERVLB4_Xq27.2b ### chrX rmsk gene 142780739 142783507 . + . gene_id "ERVLB4_Xq27.2b"; transcript_id "ERVLB4_Xq27.2b"; locus "ERVLB4_Xq27.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1937"; model_cov "1962"; model_pct "34.3"; chrX rmsk exon 142780739 142781135 11127 + . gene_id "ERVLB4_Xq27.2b"; transcript_id "ERVLB4_Xq27.2b"; locus "ERVLB4_Xq27.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1937"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "-1563"; repStart "3750"; chrX rmsk exon 142781520 142783066 11127 + . gene_id "ERVLB4_Xq27.2b"; transcript_id "ERVLB4_Xq27.2b"; locus "ERVLB4_Xq27.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1937"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "-1"; repStart "4152"; chrX rmsk exon 142783068 142783507 1654 + . gene_id "ERVLB4_Xq27.2b"; transcript_id "ERVLB4_Xq27.2b"; locus "ERVLB4_Xq27.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1937"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "-40"; repStart "-34"; ### ERVLB4_Xq27.2c ### chrX rmsk gene 142879881 142883099 . + . gene_id "ERVLB4_Xq27.2c"; transcript_id "ERVLB4_Xq27.2c"; locus "ERVLB4_Xq27.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1938"; model_cov "3220"; model_pct "56.4"; chrX rmsk exon 142879881 142883099 17716 + . gene_id "ERVLB4_Xq27.2c"; transcript_id "ERVLB4_Xq27.2c"; locus "ERVLB4_Xq27.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1938"; repClass "LTR"; repEnd "5289"; repFamily "ERVL"; repLeft "-425"; repStart "2069"; ### HERVL_Xq27.2b ### chrX rmsk gene 142915963 142922772 . + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1406"; model_cov "5652"; model_pct "100.0"; chrX rmsk exon 142915963 142916339 2874 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "1"; chrX rmsk exon 142916400 142916438 2874 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "405"; chrX rmsk exon 142916440 142922088 43417 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chrX rmsk exon 142922089 142922462 2674 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; chrX rmsk exon 142922510 142922548 285 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "363"; chrX rmsk exon 142922719 142922772 402 + . gene_id "HERVL_Xq27.2b"; transcript_id "HERVL_Xq27.2b"; locus "HERVL_Xq27.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1406"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "391"; ### LTR46_Xq27.3a ### chrX rmsk gene 143026100 143033837 . - . gene_id "LTR46_Xq27.3a"; transcript_id "LTR46_Xq27.3a"; locus "LTR46_Xq27.3a"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0025"; model_cov "6849"; model_pct "98.1"; chrX rmsk exon 143026100 143026551 2630 - . gene_id "LTR46_Xq27.3a"; transcript_id "LTR46_Xq27.3a"; locus "LTR46_Xq27.3a"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0025"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 143026552 143028337 12998 - . gene_id "LTR46_Xq27.3a"; transcript_id "LTR46_Xq27.3a"; locus "LTR46_Xq27.3a"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0025"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "5206"; repStart "0"; chrX rmsk exon 143028345 143033392 32727 - . gene_id "LTR46_Xq27.3a"; transcript_id "LTR46_Xq27.3a"; locus "LTR46_Xq27.3a"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0025"; repClass "LTR"; repEnd "5071"; repFamily "ERV1"; repLeft "1"; repStart "-1914"; chrX rmsk exon 143033393 143033837 2745 - . gene_id "LTR46_Xq27.3a"; transcript_id "LTR46_Xq27.3a"; locus "LTR46_Xq27.3a"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0025"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq27.3a ### chrX rmsk gene 143110818 143111852 . + . gene_id "HERVL_Xq27.3a"; transcript_id "HERVL_Xq27.3a"; locus "HERVL_Xq27.3a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1407"; model_cov "588"; model_pct "10.4"; chrX rmsk exon 143110818 143110986 1312 + . gene_id "HERVL_Xq27.3a"; transcript_id "HERVL_Xq27.3a"; locus "HERVL_Xq27.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1407"; repClass "LTR"; repEnd "169"; repFamily "ERVL"; repLeft "-275"; repStart "1"; chrX rmsk exon 143110987 143111574 4593 + . gene_id "HERVL_Xq27.3a"; transcript_id "HERVL_Xq27.3a"; locus "HERVL_Xq27.3a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1407"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1887"; repStart "3179"; chrX rmsk exon 143111575 143111852 1903 + . gene_id "HERVL_Xq27.3a"; transcript_id "HERVL_Xq27.3a"; locus "HERVL_Xq27.3a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1407"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "174"; ### MER61_Xq27.3a ### chrX rmsk gene 143139823 143143437 . - . gene_id "MER61_Xq27.3a"; transcript_id "MER61_Xq27.3a"; locus "MER61_Xq27.3a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0422"; model_cov "3225"; model_pct "61.8"; chrX rmsk exon 143139823 143140262 2499 - . gene_id "MER61_Xq27.3a"; transcript_id "MER61_Xq27.3a"; locus "MER61_Xq27.3a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0422"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "1"; repStart "-1"; chrX rmsk exon 143140263 143143437 17843 - . gene_id "MER61_Xq27.3a"; transcript_id "MER61_Xq27.3a"; locus "MER61_Xq27.3a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0422"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1992"; repStart "0"; ### MER4_Xq27.3a ### chrX rmsk gene 143420652 143421402 . + . gene_id "MER4_Xq27.3a"; transcript_id "MER4_Xq27.3a"; locus "MER4_Xq27.3a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0941"; model_cov "714"; model_pct "10.8"; chrX rmsk exon 143420652 143421061 2495 + . gene_id "MER4_Xq27.3a"; transcript_id "MER4_Xq27.3a"; locus "MER4_Xq27.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0941"; repClass "LTR"; repEnd "6292"; repFamily "ERV1"; repLeft "-306"; repStart "5881"; chrX rmsk exon 143421095 143421402 2495 + . gene_id "MER4_Xq27.3a"; transcript_id "MER4_Xq27.3a"; locus "MER4_Xq27.3a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0941"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "6293"; ### HERVH_Xq27.3a ### chrX rmsk gene 143502197 143504455 . - . gene_id "HERVH_Xq27.3a"; transcript_id "HERVH_Xq27.3a"; locus "HERVH_Xq27.3a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1296"; model_cov "1885"; model_pct "24.4"; chrX rmsk exon 143502197 143502583 2739 - . gene_id "HERVH_Xq27.3a"; transcript_id "HERVH_Xq27.3a"; locus "HERVH_Xq27.3a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1296"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "3"; repStart "0"; chrX rmsk exon 143502586 143503144 4092 - . gene_id "HERVH_Xq27.3a"; transcript_id "HERVH_Xq27.3a"; locus "HERVH_Xq27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1296"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrX rmsk exon 143503138 143503563 2596 - . gene_id "HERVH_Xq27.3a"; transcript_id "HERVH_Xq27.3a"; locus "HERVH_Xq27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1296"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chrX rmsk exon 143503555 143504455 6439 - . gene_id "HERVH_Xq27.3a"; transcript_id "HERVH_Xq27.3a"; locus "HERVH_Xq27.3a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1296"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4246"; repStart "-2564"; ### LTR46_Xq27.3b ### chrX rmsk gene 143509351 143517306 . + . gene_id "LTR46_Xq27.3b"; transcript_id "LTR46_Xq27.3b"; locus "LTR46_Xq27.3b"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0026"; model_cov "6983"; model_pct "100.0"; chrX rmsk exon 143509351 143509889 2505 + . gene_id "LTR46_Xq27.3b"; transcript_id "LTR46_Xq27.3b"; locus "LTR46_Xq27.3b"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0026"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 143509891 143516858 53549 + . gene_id "LTR46_Xq27.3b"; transcript_id "LTR46_Xq27.3b"; locus "LTR46_Xq27.3b"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0026"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "0"; repStart "2"; chrX rmsk exon 143516859 143517306 2975 + . gene_id "LTR46_Xq27.3b"; transcript_id "LTR46_Xq27.3b"; locus "LTR46_Xq27.3b"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0026"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR46_Xq27.3c ### chrX rmsk gene 143712688 143720583 . + . gene_id "LTR46_Xq27.3c"; transcript_id "LTR46_Xq27.3c"; locus "LTR46_Xq27.3c"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0027"; model_cov "6982"; model_pct "100.0"; chrX rmsk exon 143712688 143713133 2828 + . gene_id "LTR46_Xq27.3c"; transcript_id "LTR46_Xq27.3c"; locus "LTR46_Xq27.3c"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0027"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 143713134 143713892 50628 + . gene_id "LTR46_Xq27.3c"; transcript_id "LTR46_Xq27.3c"; locus "LTR46_Xq27.3c"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0027"; repClass "LTR"; repEnd "764"; repFamily "ERV1"; repLeft "-6221"; repStart "1"; chrX rmsk exon 143713929 143720135 50628 + . gene_id "LTR46_Xq27.3c"; transcript_id "LTR46_Xq27.3c"; locus "LTR46_Xq27.3c"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0027"; repClass "LTR"; repEnd "6984"; repFamily "ERV1"; repLeft "-1"; repStart "765"; chrX rmsk exon 143720136 143720583 2771 + . gene_id "LTR46_Xq27.3c"; transcript_id "LTR46_Xq27.3c"; locus "LTR46_Xq27.3c"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0027"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVL_Xq27.3b ### chrX rmsk gene 143996479 143998807 . - . gene_id "HERVL_Xq27.3b"; transcript_id "HERVL_Xq27.3b"; locus "HERVL_Xq27.3b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1409"; model_cov "1893"; model_pct "33.5"; chrX rmsk exon 143996479 143996910 3106 - . gene_id "HERVL_Xq27.3b"; transcript_id "HERVL_Xq27.3b"; locus "HERVL_Xq27.3b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1409"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 143996911 143998807 14417 - . gene_id "HERVL_Xq27.3b"; transcript_id "HERVL_Xq27.3b"; locus "HERVL_Xq27.3b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1409"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3761"; repStart "0"; ### ERVLE_Xq27.3a ### chrX rmsk gene 144054888 144056733 . - . gene_id "ERVLE_Xq27.3a"; transcript_id "ERVLE_Xq27.3a"; locus "ERVLE_Xq27.3a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3760"; model_cov "1585"; model_pct "28.0"; chrX rmsk exon 144054888 144055114 476 - . gene_id "ERVLE_Xq27.3a"; transcript_id "ERVLE_Xq27.3a"; locus "ERVLE_Xq27.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3760"; repClass "LTR"; repEnd "4010"; repFamily "ERVL"; repLeft "3775"; repStart "-1657"; chrX rmsk exon 144055117 144055309 445 - . gene_id "ERVLE_Xq27.3a"; transcript_id "ERVLE_Xq27.3a"; locus "ERVLE_Xq27.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3760"; repClass "LTR"; repEnd "4703"; repFamily "ERVL"; repLeft "4507"; repStart "-964"; chrX rmsk exon 144055444 144056271 2189 - . gene_id "ERVLE_Xq27.3a"; transcript_id "ERVLE_Xq27.3a"; locus "ERVLE_Xq27.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3760"; repClass "LTR"; repEnd "4317"; repFamily "ERVL"; repLeft "3415"; repStart "-1350"; chrX rmsk exon 144056492 144056733 605 - . gene_id "ERVLE_Xq27.3a"; transcript_id "ERVLE_Xq27.3a"; locus "ERVLE_Xq27.3a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3760"; repClass "LTR"; repEnd "3413"; repFamily "ERVL"; repLeft "3161"; repStart "-2254"; ### MER4_Xq27.3b ### chrX rmsk gene 144146592 144147940 . - . gene_id "MER4_Xq27.3b"; transcript_id "MER4_Xq27.3b"; locus "MER4_Xq27.3b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0942"; model_cov "945"; model_pct "14.3"; chrX rmsk exon 144146592 144147044 3003 - . gene_id "MER4_Xq27.3b"; transcript_id "MER4_Xq27.3b"; locus "MER4_Xq27.3b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0942"; repClass "LTR"; repEnd "449"; repFamily "ERV1"; repLeft "1"; repStart "-23"; chrX rmsk exon 144147046 144147247 885 - . gene_id "MER4_Xq27.3b"; transcript_id "MER4_Xq27.3b"; locus "MER4_Xq27.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0942"; repClass "LTR"; repEnd "1487"; repFamily "ERV1"; repLeft "1275"; repStart "-5111"; chrX rmsk exon 144147346 144147432 257 - . gene_id "MER4_Xq27.3b"; transcript_id "MER4_Xq27.3b"; locus "MER4_Xq27.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0942"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chrX rmsk exon 144147420 144147940 2213 - . gene_id "MER4_Xq27.3b"; transcript_id "MER4_Xq27.3b"; locus "MER4_Xq27.3b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0942"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "36"; repStart "-5912"; ### HUERSP2_Xq27.3a ### chrX rmsk gene 144171196 144172058 . - . gene_id "HUERSP2_Xq27.3a"; transcript_id "HUERSP2_Xq27.3a"; locus "HUERSP2_Xq27.3a"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0128"; model_cov "755"; model_pct "24.4"; chrX rmsk exon 144171196 144171732 2095 - . gene_id "HUERSP2_Xq27.3a"; transcript_id "HUERSP2_Xq27.3a"; locus "HUERSP2_Xq27.3a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0128"; repClass "LTR"; repEnd "1096"; repFamily "ERV1"; repLeft "562"; repStart "-1992"; chrX rmsk exon 144171836 144172058 978 - . gene_id "HUERSP2_Xq27.3a"; transcript_id "HUERSP2_Xq27.3a"; locus "HUERSP2_Xq27.3a"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0128"; repClass "LTR"; repEnd "510"; repFamily "ERV1"; repLeft "289"; repStart "-2578"; ### ERVLB4_Xq27.3a ### chrX rmsk gene 144173835 144175503 . - . gene_id "ERVLB4_Xq27.3a"; transcript_id "ERVLB4_Xq27.3a"; locus "ERVLB4_Xq27.3a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1939"; model_cov "1026"; model_pct "18.0"; chrX rmsk exon 144173835 144173872 2003 - . gene_id "ERVLB4_Xq27.3a"; transcript_id "ERVLB4_Xq27.3a"; locus "ERVLB4_Xq27.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1939"; repClass "LTR"; repEnd "546"; repFamily "ERVL"; repLeft "514"; repStart "-8"; chrX rmsk exon 144173928 144174445 2003 - . gene_id "ERVLB4_Xq27.3a"; transcript_id "ERVLB4_Xq27.3a"; locus "ERVLB4_Xq27.3a"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1939"; repClass "LTR"; repEnd "513"; repFamily "ERVL"; repLeft "1"; repStart "-41"; chrX rmsk exon 144174451 144175503 5134 - . gene_id "ERVLB4_Xq27.3a"; transcript_id "ERVLB4_Xq27.3a"; locus "ERVLB4_Xq27.3a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1939"; repClass "LTR"; repEnd "5709"; repFamily "ERVL"; repLeft "4683"; repStart "-5"; ### HUERSP2_Xq27.3b ### chrX rmsk gene 144331053 144336372 . - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0129"; model_cov "3085"; model_pct "99.9"; chrX rmsk exon 144331053 144331851 4736 - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0129"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "7"; repStart "0"; chrX rmsk exon 144331863 144332407 11468 - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0129"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2530"; repStart "0"; chrX rmsk exon 144332719 144334361 15375 - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0129"; repClass "LTR"; repEnd "2529"; repFamily "ERV1"; repLeft "913"; repStart "-559"; chrX rmsk exon 144334665 144335550 15375 - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0129"; repClass "LTR"; repEnd "912"; repFamily "ERV1"; repLeft "1"; repStart "-2176"; chrX rmsk exon 144335551 144336372 4639 - . gene_id "HUERSP2_Xq27.3b"; transcript_id "HUERSP2_Xq27.3b"; locus "HUERSP2_Xq27.3b"; repName "LTR1"; geneRegion "ltr"; locid "HUERS-P2-int_0129"; repClass "LTR"; repEnd "783"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Xq27.3c ### chrX rmsk gene 144346168 144351079 . - . gene_id "HERVL_Xq27.3c"; transcript_id "HERVL_Xq27.3c"; locus "HERVL_Xq27.3c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1410"; model_cov "4017"; model_pct "71.0"; chrX rmsk exon 144346168 144346621 3246 - . gene_id "HERVL_Xq27.3c"; transcript_id "HERVL_Xq27.3c"; locus "HERVL_Xq27.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1410"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrX rmsk exon 144346622 144350636 29302 - . gene_id "HERVL_Xq27.3c"; transcript_id "HERVL_Xq27.3c"; locus "HERVL_Xq27.3c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1410"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "1637"; repStart "0"; chrX rmsk exon 144350717 144351079 2588 - . gene_id "HERVL_Xq27.3c"; transcript_id "HERVL_Xq27.3c"; locus "HERVL_Xq27.3c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1410"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "1"; repStart "-67"; ### MER4_Xq27.3c ### chrX rmsk gene 144602889 144607197 . - . gene_id "MER4_Xq27.3c"; transcript_id "MER4_Xq27.3c"; locus "MER4_Xq27.3c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0943"; model_cov "5042"; model_pct "76.4"; chrX rmsk exon 144602889 144603477 13182 - . gene_id "MER4_Xq27.3c"; transcript_id "MER4_Xq27.3c"; locus "MER4_Xq27.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0943"; repClass "LTR"; repEnd "5719"; repFamily "ERV1"; repLeft "5107"; repStart "-879"; chrX rmsk exon 144603839 144607197 13182 - . gene_id "MER4_Xq27.3c"; transcript_id "MER4_Xq27.3c"; locus "MER4_Xq27.3c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0943"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "676"; repStart "-1492"; ### MER4_Xq27.3d ### chrX rmsk gene 144678014 144681364 . + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0945"; model_cov "2367"; model_pct "35.9"; chrX rmsk exon 144678014 144678469 3039 + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0945"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 144678473 144679018 2680 + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0945"; repClass "LTR"; repEnd "679"; repFamily "ERV1"; repLeft "-5919"; repStart "1"; chrX rmsk exon 144679023 144679109 365 + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0945"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chrX rmsk exon 144679162 144679522 1439 + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0945"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chrX rmsk exon 144680577 144681364 4166 + . gene_id "MER4_Xq27.3d"; transcript_id "MER4_Xq27.3d"; locus "MER4_Xq27.3d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0945"; repClass "LTR"; repEnd "2493"; repFamily "ERV1"; repLeft "-4105"; repStart "1266"; ### MER4B_Xq27.3a ### chrX rmsk gene 144679545 144680417 . + . gene_id "MER4B_Xq27.3a"; transcript_id "MER4B_Xq27.3a"; locus "MER4B_Xq27.3a"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0549"; model_cov "952"; model_pct "14.1"; chrX rmsk exon 144679545 144680417 4174 + . gene_id "MER4B_Xq27.3a"; transcript_id "MER4B_Xq27.3a"; locus "MER4B_Xq27.3a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0549"; repClass "LTR"; repEnd "1150"; repFamily "ERV1"; repLeft "-5608"; repStart "198"; ### MER4_Xq27.3e ### chrX rmsk gene 144682038 144686603 . + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0946"; model_cov "3601"; model_pct "54.6"; chrX rmsk exon 144682038 144682455 3709 + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0946"; repClass "LTR"; repEnd "1987"; repFamily "ERV1"; repLeft "-4611"; repStart "1580"; chrX rmsk exon 144682597 144682856 3709 + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0946"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "-4428"; repStart "1988"; chrX rmsk exon 144683160 144683425 2904 + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0946"; repClass "LTR"; repEnd "3675"; repFamily "ERV1"; repLeft "-2923"; repStart "3444"; chrX rmsk exon 144683424 144686150 13569 + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0946"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3815"; chrX rmsk exon 144686157 144686603 2953 + . gene_id "MER4_Xq27.3e"; transcript_id "MER4_Xq27.3e"; locus "MER4_Xq27.3e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0946"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xq27.3b ### chrX rmsk gene 144717374 144722915 . + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0423"; model_cov "4971"; model_pct "95.3"; chrX rmsk exon 144717374 144717676 1537 + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0423"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "1"; chrX rmsk exon 144717689 144718508 3600 + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0423"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "3"; chrX rmsk exon 144718509 144718824 1783 + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0423"; repClass "LTR"; repEnd "1269"; repFamily "ERV1"; repLeft "-3948"; repStart "958"; chrX rmsk exon 144718834 144722608 26027 + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0423"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "1393"; chrX rmsk exon 144722635 144722915 1255 + . gene_id "MER61_Xq27.3b"; transcript_id "MER61_Xq27.3b"; locus "MER61_Xq27.3b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0423"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-29"; repStart "127"; ### MER4B_Xq27.3b ### chrX rmsk gene 144738755 144742822 . + . gene_id "MER4B_Xq27.3b"; transcript_id "MER4B_Xq27.3b"; locus "MER4B_Xq27.3b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0550"; model_cov "4000"; model_pct "59.2"; chrX rmsk exon 144738755 144739511 5255 + . gene_id "MER4B_Xq27.3b"; transcript_id "MER4B_Xq27.3b"; locus "MER4B_Xq27.3b"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0550"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 144739512 144740245 4554 + . gene_id "MER4B_Xq27.3b"; transcript_id "MER4B_Xq27.3b"; locus "MER4B_Xq27.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0550"; repClass "LTR"; repEnd "724"; repFamily "ERV1"; repLeft "-6034"; repStart "1"; chrX rmsk exon 144740935 144742822 2075 + . gene_id "MER4B_Xq27.3b"; transcript_id "MER4B_Xq27.3b"; locus "MER4B_Xq27.3b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0550"; repClass "LTR"; repEnd "2551"; repFamily "ERV1"; repLeft "-4207"; repStart "-726"; ### PRIMA4_Xq27.3 ### chrX rmsk gene 144907695 144914115 . + . gene_id "PRIMA4_Xq27.3"; transcript_id "PRIMA4_Xq27.3"; locus "PRIMA4_Xq27.3"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0258"; model_cov "3553"; model_pct "43.0"; chrX rmsk exon 144907695 144908276 2368 + . gene_id "PRIMA4_Xq27.3"; transcript_id "PRIMA4_Xq27.3"; locus "PRIMA4_Xq27.3"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0258"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 144908277 144909577 20899 + . gene_id "PRIMA4_Xq27.3"; transcript_id "PRIMA4_Xq27.3"; locus "PRIMA4_Xq27.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0258"; repClass "LTR"; repEnd "1363"; repFamily "ERV1"; repLeft "-6907"; repStart "1"; chrX rmsk exon 144911904 144914115 20899 + . gene_id "PRIMA4_Xq27.3"; transcript_id "PRIMA4_Xq27.3"; locus "PRIMA4_Xq27.3"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0258"; repClass "LTR"; repEnd "3555"; repFamily "ERV1"; repLeft "-4715"; repStart "1364"; ### MER4_Xq27.3f ### chrX rmsk gene 144914110 144919568 . - . gene_id "MER4_Xq27.3f"; transcript_id "MER4_Xq27.3f"; locus "MER4_Xq27.3f"; category "internal"; intModel "MER4-int"; locid "MER4-int_0947"; model_cov "4773"; model_pct "72.3"; chrX rmsk exon 144914110 144916570 12025 - . gene_id "MER4_Xq27.3f"; transcript_id "MER4_Xq27.3f"; locus "MER4_Xq27.3f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0947"; repClass "LTR"; repEnd "6376"; repFamily "ERV1"; repLeft "3815"; repStart "-222"; chrX rmsk exon 144916570 144917479 4041 - . gene_id "MER4_Xq27.3f"; transcript_id "MER4_Xq27.3f"; locus "MER4_Xq27.3f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0947"; repClass "LTR"; repEnd "2196"; repFamily "ERV1"; repLeft "1581"; repStart "-4402"; chrX rmsk exon 144918181 144918923 4041 - . gene_id "MER4_Xq27.3f"; transcript_id "MER4_Xq27.3f"; locus "MER4_Xq27.3f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0947"; repClass "LTR"; repEnd "1580"; repFamily "ERV1"; repLeft "629"; repStart "-5018"; chrX rmsk exon 144918927 144919568 3790 - . gene_id "MER4_Xq27.3f"; transcript_id "MER4_Xq27.3f"; locus "MER4_Xq27.3f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0947"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "39"; repStart "-5913"; ### MER4_Xq27.3g ### chrX rmsk gene 144919592 144921152 . - . gene_id "MER4_Xq27.3g"; transcript_id "MER4_Xq27.3g"; locus "MER4_Xq27.3g"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0948"; model_cov "1165"; model_pct "17.7"; chrX rmsk exon 144919592 144919929 1190 - . gene_id "MER4_Xq27.3g"; transcript_id "MER4_Xq27.3g"; locus "MER4_Xq27.3g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0948"; repClass "LTR"; repEnd "2479"; repFamily "ERV1"; repLeft "2121"; repStart "-4119"; chrX rmsk exon 144920002 144920614 2711 - . gene_id "MER4_Xq27.3g"; transcript_id "MER4_Xq27.3g"; locus "MER4_Xq27.3g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0948"; repClass "LTR"; repEnd "808"; repFamily "ERV1"; repLeft "1"; repStart "-5790"; chrX rmsk exon 144920617 144921152 2911 - . gene_id "MER4_Xq27.3g"; transcript_id "MER4_Xq27.3g"; locus "MER4_Xq27.3g"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0948"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xq27.3b ### chrX rmsk gene 144973629 144975709 . + . gene_id "ERVLB4_Xq27.3b"; transcript_id "ERVLB4_Xq27.3b"; locus "ERVLB4_Xq27.3b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1940"; model_cov "1201"; model_pct "21.0"; chrX rmsk exon 144973629 144974827 6450 + . gene_id "ERVLB4_Xq27.3b"; transcript_id "ERVLB4_Xq27.3b"; locus "ERVLB4_Xq27.3b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1940"; repClass "LTR"; repEnd "1202"; repFamily "ERVL"; repLeft "-4512"; repStart "1"; chrX rmsk exon 144975189 144975709 1903 + . gene_id "ERVLB4_Xq27.3b"; transcript_id "ERVLB4_Xq27.3b"; locus "ERVLB4_Xq27.3b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1940"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### MER4B_Xq27.3c ### chrX rmsk gene 145002312 145003425 . - . gene_id "MER4B_Xq27.3c"; transcript_id "MER4B_Xq27.3c"; locus "MER4B_Xq27.3c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0551"; model_cov "1103"; model_pct "16.3"; chrX rmsk exon 145002312 145003425 5664 - . gene_id "MER4B_Xq27.3c"; transcript_id "MER4B_Xq27.3c"; locus "MER4B_Xq27.3c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0551"; repClass "LTR"; repEnd "1298"; repFamily "ERV1"; repLeft "195"; repStart "-5460"; ### ERV316A3_Xq27.3a ### chrX rmsk gene 145056236 145061665 . + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2847"; model_cov "3247"; model_pct "62.1"; chrX rmsk exon 145056236 145056646 960 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-1"; repStart "4"; chrX rmsk exon 145056665 145057103 1044 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "718"; repFamily "ERVL"; repLeft "-4508"; repStart "272"; chrX rmsk exon 145058690 145059865 1667 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "2769"; repFamily "ERVL"; repLeft "-2457"; repStart "1545"; chrX rmsk exon 145059855 145060627 1761 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "3801"; repFamily "ERVL"; repLeft "-1425"; repStart "2780"; chrX rmsk exon 145060625 145060886 468 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "4127"; repFamily "ERVL"; repLeft "-1099"; repStart "3859"; chrX rmsk exon 145060943 145061096 406 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "4658"; repFamily "ERVL"; repLeft "-568"; repStart "4504"; chrX rmsk exon 145061534 145061665 291 + . gene_id "ERV316A3_Xq27.3a"; transcript_id "ERV316A3_Xq27.3a"; locus "ERV316A3_Xq27.3a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2847"; repClass "LTR"; repEnd "5097"; repFamily "ERVL"; repLeft "-129"; repStart "4963"; ### ERV316A3_Xq27.3b ### chrX rmsk gene 145163963 145164729 . - . gene_id "ERV316A3_Xq27.3b"; transcript_id "ERV316A3_Xq27.3b"; locus "ERV316A3_Xq27.3b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2848"; model_cov "592"; model_pct "11.3"; chrX rmsk exon 145163963 145164111 388 - . gene_id "ERV316A3_Xq27.3b"; transcript_id "ERV316A3_Xq27.3b"; locus "ERV316A3_Xq27.3b"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2848"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "309"; repStart "0"; chrX rmsk exon 145164114 145164729 1371 - . gene_id "ERV316A3_Xq27.3b"; transcript_id "ERV316A3_Xq27.3b"; locus "ERV316A3_Xq27.3b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2848"; repClass "LTR"; repEnd "4860"; repFamily "ERVL"; repLeft "4268"; repStart "-366"; ### LTR46_Xq27.3d ### chrX rmsk gene 145247669 145255482 . - . gene_id "LTR46_Xq27.3d"; transcript_id "LTR46_Xq27.3d"; locus "LTR46_Xq27.3d"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0028"; model_cov "6888"; model_pct "98.6"; chrX rmsk exon 145247669 145248114 2682 - . gene_id "LTR46_Xq27.3d"; transcript_id "LTR46_Xq27.3d"; locus "LTR46_Xq27.3d"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0028"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 145248115 145248580 3689 - . gene_id "LTR46_Xq27.3d"; transcript_id "LTR46_Xq27.3d"; locus "LTR46_Xq27.3d"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0028"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6520"; repStart "0"; chrX rmsk exon 145248612 145255032 45990 - . gene_id "LTR46_Xq27.3d"; transcript_id "LTR46_Xq27.3d"; locus "LTR46_Xq27.3d"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0028"; repClass "LTR"; repEnd "6424"; repFamily "ERV1"; repLeft "1"; repStart "-561"; chrX rmsk exon 145255033 145255482 3002 - . gene_id "LTR46_Xq27.3d"; transcript_id "LTR46_Xq27.3d"; locus "LTR46_Xq27.3d"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0028"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER61_Xq27.3c ### chrX rmsk gene 145467160 145472734 . + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0424"; model_cov "4616"; model_pct "88.5"; chrX rmsk exon 145467160 145467480 1646 + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0424"; repClass "LTR"; repEnd "338"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chrX rmsk exon 145467484 145468101 2444 + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0424"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-4510"; repStart "1"; chrX rmsk exon 145468132 145468267 540 + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0424"; repClass "LTR"; repEnd "1510"; repFamily "ERV1"; repLeft "-3707"; repStart "1320"; chrX rmsk exon 145468733 145472420 25060 + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0424"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1497"; chrX rmsk exon 145472421 145472734 1351 + . gene_id "MER61_Xq27.3c"; transcript_id "MER61_Xq27.3c"; locus "MER61_Xq27.3c"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0424"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_Xq27.3c ### chrX rmsk gene 145539818 145541290 . + . gene_id "ERVLB4_Xq27.3c"; transcript_id "ERVLB4_Xq27.3c"; locus "ERVLB4_Xq27.3c"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1941"; model_cov "913"; model_pct "16.0"; chrX rmsk exon 145539818 145540175 1338 + . gene_id "ERVLB4_Xq27.3c"; transcript_id "ERVLB4_Xq27.3c"; locus "ERVLB4_Xq27.3c"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1941"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-51"; repStart "6"; chrX rmsk exon 145540458 145540836 1180 + . gene_id "ERVLB4_Xq27.3c"; transcript_id "ERVLB4_Xq27.3c"; locus "ERVLB4_Xq27.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1941"; repClass "LTR"; repEnd "479"; repFamily "ERVL"; repLeft "-5235"; repStart "2"; chrX rmsk exon 145540825 145541290 2288 + . gene_id "ERVLB4_Xq27.3c"; transcript_id "ERVLB4_Xq27.3c"; locus "ERVLB4_Xq27.3c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1941"; repClass "LTR"; repEnd "3868"; repFamily "ERVL"; repLeft "-1846"; repStart "3432"; ### MER4_Xq27.3h ### chrX rmsk gene 145664439 145669242 . + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0952"; model_cov "2860"; model_pct "43.3"; chrX rmsk exon 145664439 145664989 3080 + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0952"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrX rmsk exon 145665522 145665575 301 + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0952"; repClass "LTR"; repEnd "-669"; repFamily "ERV1"; repLeft "-7267"; repStart "-722"; chrX rmsk exon 145665641 145665993 1254 + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0952"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2123"; chrX rmsk exon 145666288 145668644 11851 + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0952"; repClass "LTR"; repEnd "6588"; repFamily "ERV1"; repLeft "-10"; repStart "4149"; chrX rmsk exon 145668661 145669242 2942 + . gene_id "MER4_Xq27.3h"; transcript_id "MER4_Xq27.3h"; locus "MER4_Xq27.3h"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0952"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Xq27.3d ### chrX rmsk gene 145715468 145716657 . + . gene_id "MER61_Xq27.3d"; transcript_id "MER61_Xq27.3d"; locus "MER61_Xq27.3d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0425"; model_cov "933"; model_pct "17.9"; chrX rmsk exon 145715468 145716035 2053 + . gene_id "MER61_Xq27.3d"; transcript_id "MER61_Xq27.3d"; locus "MER61_Xq27.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0425"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "-4440"; repStart "189"; chrX rmsk exon 145716029 145716275 1200 + . gene_id "MER61_Xq27.3d"; transcript_id "MER61_Xq27.3d"; locus "MER61_Xq27.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0425"; repClass "LTR"; repEnd "1621"; repFamily "ERV1"; repLeft "-3596"; repStart "1320"; chrX rmsk exon 145716291 145716335 371 + . gene_id "MER61_Xq27.3d"; transcript_id "MER61_Xq27.3d"; locus "MER61_Xq27.3d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0425"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "5173"; chrX rmsk exon 145716336 145716657 1924 + . gene_id "MER61_Xq27.3d"; transcript_id "MER61_Xq27.3d"; locus "MER61_Xq27.3d"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0425"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR57_Xq27.3 ### chrX rmsk gene 145919543 145924944 . + . gene_id "LTR57_Xq27.3"; transcript_id "LTR57_Xq27.3"; locus "LTR57_Xq27.3"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0204"; model_cov "4649"; model_pct "87.0"; chrX rmsk exon 145919543 145920790 16830 + . gene_id "LTR57_Xq27.3"; transcript_id "LTR57_Xq27.3"; locus "LTR57_Xq27.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0204"; repClass "LTR"; repEnd "1811"; repFamily "ERVL"; repLeft "-3532"; repStart "570"; chrX rmsk exon 145921169 145922676 16830 + . gene_id "LTR57_Xq27.3"; transcript_id "LTR57_Xq27.3"; locus "LTR57_Xq27.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0204"; repClass "LTR"; repEnd "3332"; repFamily "ERVL"; repLeft "-2011"; repStart "1812"; chrX rmsk exon 145922660 145924538 10746 + . gene_id "LTR57_Xq27.3"; transcript_id "LTR57_Xq27.3"; locus "LTR57_Xq27.3"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0204"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "0"; repStart "3455"; chrX rmsk exon 145924539 145924944 2115 + . gene_id "LTR57_Xq27.3"; transcript_id "LTR57_Xq27.3"; locus "LTR57_Xq27.3"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0204"; repClass "LTR"; repEnd "409"; repFamily "ERVL"; repLeft "-2"; repStart "1"; ### HERVL_Xq27.3d ### chrX rmsk gene 145938594 145940453 . + . gene_id "HERVL_Xq27.3d"; transcript_id "HERVL_Xq27.3d"; locus "HERVL_Xq27.3d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1411"; model_cov "1298"; model_pct "23.0"; chrX rmsk exon 145938594 145939139 1935 + . gene_id "HERVL_Xq27.3d"; transcript_id "HERVL_Xq27.3d"; locus "HERVL_Xq27.3d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1411"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "-100"; chrX rmsk exon 145939141 145939525 6152 + . gene_id "HERVL_Xq27.3d"; transcript_id "HERVL_Xq27.3d"; locus "HERVL_Xq27.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1411"; repClass "LTR"; repEnd "293"; repFamily "ERVL"; repLeft "-5361"; repStart "-101"; chrX rmsk exon 145939575 145940453 6152 + . gene_id "HERVL_Xq27.3d"; transcript_id "HERVL_Xq27.3d"; locus "HERVL_Xq27.3d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1411"; repClass "LTR"; repEnd "1198"; repFamily "ERVL"; repLeft "-4456"; repStart "294"; ### HERVIP10FH_Xq27.3 ### chrX rmsk gene 145970461 145974662 . + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0214"; model_cov "3117"; model_pct "61.1"; chrX rmsk exon 145970461 145970866 1994 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "-7"; repStart "1"; chrX rmsk exon 145970870 145971198 1926 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "-2362"; repFamily "ERV1"; repLeft "-7464"; repStart "-2682"; chrX rmsk exon 145971552 145971645 2307 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "939"; repFamily "ERV1"; repLeft "-4163"; repStart "850"; chrX rmsk exon 145971687 145971997 2307 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "1264"; repFamily "ERV1"; repLeft "-3838"; repStart "940"; chrX rmsk exon 145971993 145973073 17839 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "2473"; repFamily "ERV1"; repLeft "-2629"; repStart "1383"; chrX rmsk exon 145973367 145974662 17839 + . gene_id "HERVIP10FH_Xq27.3"; transcript_id "HERVIP10FH_Xq27.3"; locus "HERVIP10FH_Xq27.3"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0214"; repClass "LTR"; repEnd "3768"; repFamily "ERV1"; repLeft "-1334"; repStart "2474"; ### HERVIP10F_Xq27.3 ### chrX rmsk gene 145975964 145977739 . + . gene_id "HERVIP10F_Xq27.3"; transcript_id "HERVIP10F_Xq27.3"; locus "HERVIP10F_Xq27.3"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0126"; model_cov "1323"; model_pct "17.1"; chrX rmsk exon 145975964 145977283 10830 + . gene_id "HERVIP10F_Xq27.3"; transcript_id "HERVIP10F_Xq27.3"; locus "HERVIP10F_Xq27.3"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0126"; repClass "LTR"; repEnd "7733"; repFamily "ERV1"; repLeft "-4"; repStart "6410"; chrX rmsk exon 145977288 145977739 3048 + . gene_id "HERVIP10F_Xq27.3"; transcript_id "HERVIP10F_Xq27.3"; locus "HERVIP10F_Xq27.3"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10F-int_0126"; repClass "LTR"; repEnd "509"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER101_Xq27.3 ### chrX rmsk gene 146029510 146030727 . - . gene_id "MER101_Xq27.3"; transcript_id "MER101_Xq27.3"; locus "MER101_Xq27.3"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0446"; model_cov "891"; model_pct "13.4"; chrX rmsk exon 146029510 146029786 1551 - . gene_id "MER101_Xq27.3"; transcript_id "MER101_Xq27.3"; locus "MER101_Xq27.3"; repName "MER101"; geneRegion "ltr"; locid "MER101-int_0446"; repClass "LTR"; repEnd "324"; repFamily "ERV1"; repLeft "24"; repStart "-150"; chrX rmsk exon 146029833 146030727 5221 - . gene_id "MER101_Xq27.3"; transcript_id "MER101_Xq27.3"; locus "MER101_Xq27.3"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0446"; repClass "LTR"; repEnd "6547"; repFamily "ERV1"; repLeft "5656"; repStart "-92"; ### HERVL_Xq27.3e ### chrX rmsk gene 146312957 146316323 . - . gene_id "HERVL_Xq27.3e"; transcript_id "HERVL_Xq27.3e"; locus "HERVL_Xq27.3e"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1412"; model_cov "3378"; model_pct "59.7"; chrX rmsk exon 146312957 146315662 19547 - . gene_id "HERVL_Xq27.3e"; transcript_id "HERVL_Xq27.3e"; locus "HERVL_Xq27.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1412"; repClass "LTR"; repEnd "4761"; repFamily "ERVL"; repLeft "2050"; repStart "-893"; chrX rmsk exon 146315657 146316323 4558 - . gene_id "HERVL_Xq27.3e"; transcript_id "HERVL_Xq27.3e"; locus "HERVL_Xq27.3e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1412"; repClass "LTR"; repEnd "1914"; repFamily "ERVL"; repLeft "1247"; repStart "-3740"; ### MER4_Xq27.3i ### chrX rmsk gene 146439867 146446789 . - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0953"; model_cov "3893"; model_pct "59.0"; chrX rmsk exon 146439867 146440241 2204 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0953"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "87"; repStart "0"; chrX rmsk exon 146440735 146440806 564 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0953"; repClass "LTR"; repEnd "72"; repFamily "ERV1"; repLeft "1"; repStart "-400"; chrX rmsk exon 146440818 146441566 14199 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "5859"; repStart "-5"; chrX rmsk exon 146442645 146443531 14199 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "5858"; repFamily "ERV1"; repLeft "4943"; repStart "-740"; chrX rmsk exon 146443611 146444713 14199 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "3815"; repStart "-1656"; chrX rmsk exon 146444725 146445001 3211 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "3674"; repFamily "ERV1"; repLeft "3416"; repStart "-2924"; chrX rmsk exon 146445309 146445911 3211 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "3415"; repFamily "ERV1"; repLeft "2737"; repStart "-3183"; chrX rmsk exon 146446615 146446789 3195 - . gene_id "MER4_Xq27.3i"; transcript_id "MER4_Xq27.3i"; locus "MER4_Xq27.3i"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0953"; repClass "LTR"; repEnd "1581"; repFamily "ERV1"; repLeft "1400"; repStart "-5017"; ### MER4B_Xq27.3d ### chrX rmsk gene 146446783 146447878 . - . gene_id "MER4B_Xq27.3d"; transcript_id "MER4B_Xq27.3d"; locus "MER4B_Xq27.3d"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0553"; model_cov "1203"; model_pct "17.8"; chrX rmsk exon 146446783 146447878 3789 - . gene_id "MER4B_Xq27.3d"; transcript_id "MER4B_Xq27.3d"; locus "MER4B_Xq27.3d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0553"; repClass "LTR"; repEnd "1401"; repFamily "ERV1"; repLeft "198"; repStart "-5357"; ### ERV316A3_Xq27.3c ### chrX rmsk gene 146501223 146505226 . + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2849"; model_cov "2755"; model_pct "52.7"; chrX rmsk exon 146501223 146501629 1439 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "478"; repFamily "ERVL"; repLeft "-2"; repStart "1"; chrX rmsk exon 146501756 146502500 3182 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "854"; repFamily "ERVL"; repLeft "-4372"; repStart "95"; chrX rmsk exon 146502874 146503572 3182 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "1574"; repFamily "ERVL"; repLeft "-3652"; repStart "855"; chrX rmsk exon 146503600 146504172 1448 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "2314"; repFamily "ERVL"; repLeft "-2912"; repStart "1741"; chrX rmsk exon 146504201 146504430 2098 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "3535"; repFamily "ERVL"; repLeft "-1691"; repStart "3303"; chrX rmsk exon 146504742 146505226 2098 + . gene_id "ERV316A3_Xq27.3c"; transcript_id "ERV316A3_Xq27.3c"; locus "ERV316A3_Xq27.3c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2849"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "-1218"; repStart "3536"; ### ERV316A3_Xq27.3d ### chrX rmsk gene 146508836 146510305 . + . gene_id "ERV316A3_Xq27.3d"; transcript_id "ERV316A3_Xq27.3d"; locus "ERV316A3_Xq27.3d"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2850"; model_cov "1105"; model_pct "21.1"; chrX rmsk exon 146508836 146509647 954 + . gene_id "ERV316A3_Xq27.3d"; transcript_id "ERV316A3_Xq27.3d"; locus "ERV316A3_Xq27.3d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2850"; repClass "LTR"; repEnd "4727"; repFamily "ERVL"; repLeft "-499"; repStart "3622"; chrX rmsk exon 146509845 146510305 1430 + . gene_id "ERV316A3_Xq27.3d"; transcript_id "ERV316A3_Xq27.3d"; locus "ERV316A3_Xq27.3d"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2850"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_Xq27.3e ### chrX rmsk gene 146669441 146671936 . + . gene_id "ERV316A3_Xq27.3e"; transcript_id "ERV316A3_Xq27.3e"; locus "ERV316A3_Xq27.3e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2851"; model_cov "2507"; model_pct "48.0"; chrX rmsk exon 146669441 146671936 8485 + . gene_id "ERV316A3_Xq27.3e"; transcript_id "ERV316A3_Xq27.3e"; locus "ERV316A3_Xq27.3e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2851"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "2487"; ### MER4_Xq27.3j ### chrX rmsk gene 146859403 146867722 . - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0954"; model_cov "5338"; model_pct "80.9"; chrX rmsk exon 146859403 146859826 2693 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0954"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "4"; repStart "0"; chrX rmsk exon 146859831 146861641 10724 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4747"; repStart "0"; chrX rmsk exon 146862451 146863326 4710 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "4717"; repFamily "ERV1"; repLeft "3815"; repStart "-1881"; chrX rmsk exon 146863325 146864241 3802 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "2737"; repStart "-2922"; chrX rmsk exon 146864485 146865183 4054 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "1756"; repStart "-4104"; chrX rmsk exon 146865197 146865457 1287 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "764"; repStart "-5573"; chrX rmsk exon 146865480 146865858 3910 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "313"; repStart "-5912"; chrX rmsk exon 146867444 146867722 3910 - . gene_id "MER4_Xq27.3j"; transcript_id "MER4_Xq27.3j"; locus "MER4_Xq27.3j"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0954"; repClass "LTR"; repEnd "312"; repFamily "ERV1"; repLeft "38"; repStart "-6286"; ### MER4_Xq27.3k ### chrX rmsk gene 146867764 146868917 . - . gene_id "MER4_Xq27.3k"; transcript_id "MER4_Xq27.3k"; locus "MER4_Xq27.3k"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0955"; model_cov "951"; model_pct "14.4"; chrX rmsk exon 146867764 146868070 1489 - . gene_id "MER4_Xq27.3k"; transcript_id "MER4_Xq27.3k"; locus "MER4_Xq27.3k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0955"; repClass "LTR"; repEnd "2435"; repFamily "ERV1"; repLeft "2112"; repStart "-4163"; chrX rmsk exon 146868136 146868206 352 - . gene_id "MER4_Xq27.3k"; transcript_id "MER4_Xq27.3k"; locus "MER4_Xq27.3k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0955"; repClass "LTR"; repEnd "809"; repFamily "ERV1"; repLeft "743"; repStart "-5789"; chrX rmsk exon 146868268 146868754 2711 - . gene_id "MER4_Xq27.3k"; transcript_id "MER4_Xq27.3k"; locus "MER4_Xq27.3k"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0955"; repClass "LTR"; repEnd "563"; repFamily "ERV1"; repLeft "1"; repStart "-6035"; chrX rmsk exon 146868757 146868917 2990 - . gene_id "MER4_Xq27.3k"; transcript_id "MER4_Xq27.3k"; locus "MER4_Xq27.3k"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0955"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "313"; repStart "0"; ### MER4B_Xq27.3e ### chrX rmsk gene 146996210 147003550 . + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0554"; model_cov "5234"; model_pct "77.4"; chrX rmsk exon 146996210 146996283 458 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "1149"; repFamily "ERV1"; repLeft "-5609"; repStart "1085"; chrX rmsk exon 146996314 146996407 458 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "1400"; repFamily "ERV1"; repLeft "-5358"; repStart "1299"; chrX rmsk exon 146996412 146998907 8203 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "3083"; repFamily "ERV1"; repLeft "-3675"; repStart "970"; chrX rmsk exon 146998912 146999553 4285 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "-2670"; repStart "3430"; chrX rmsk exon 146999553 147000000 2998 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "4907"; repFamily "ERV1"; repLeft "-1851"; repStart "4452"; chrX rmsk exon 147000001 147000425 9990 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "5365"; repFamily "ERV1"; repLeft "-1393"; repStart "4908"; chrX rmsk exon 147001052 147001376 9990 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "5688"; repFamily "ERV1"; repLeft "-1070"; repStart "5366"; chrX rmsk exon 147001417 147002379 9990 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "6690"; repFamily "ERV1"; repLeft "-68"; repStart "5689"; chrX rmsk exon 147002971 147003034 402 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "6694"; chrX rmsk exon 147003035 147003550 2166 + . gene_id "MER4B_Xq27.3e"; transcript_id "MER4B_Xq27.3e"; locus "MER4B_Xq27.3e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0554"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "-289"; ### ERVL_Xq27.3 ### chrX rmsk gene 147006211 147008012 . + . gene_id "ERVL_Xq27.3"; transcript_id "ERVL_Xq27.3"; locus "ERVL_Xq27.3"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0505"; model_cov "1440"; model_pct "25.0"; chrX rmsk exon 147006211 147006450 1356 + . gene_id "ERVL_Xq27.3"; transcript_id "ERVL_Xq27.3"; locus "ERVL_Xq27.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0505"; repClass "LTR"; repEnd "3904"; repFamily "ERVL"; repLeft "-1853"; repStart "3665"; chrX rmsk exon 147006453 147007228 6324 + . gene_id "ERVL_Xq27.3"; transcript_id "ERVL_Xq27.3"; locus "ERVL_Xq27.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0505"; repClass "LTR"; repEnd "5345"; repFamily "ERVL"; repLeft "-412"; repStart "4554"; chrX rmsk exon 147007528 147007630 6324 + . gene_id "ERVL_Xq27.3"; transcript_id "ERVL_Xq27.3"; locus "ERVL_Xq27.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0505"; repClass "LTR"; repEnd "5423"; repFamily "ERVL"; repLeft "-334"; repStart "5346"; chrX rmsk exon 147007656 147008012 6324 + . gene_id "ERVL_Xq27.3"; transcript_id "ERVL_Xq27.3"; locus "ERVL_Xq27.3"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0505"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "5424"; ### ERVLB4_Xq27.3d ### chrX rmsk gene 147054223 147057766 . - . gene_id "ERVLB4_Xq27.3d"; transcript_id "ERVLB4_Xq27.3d"; locus "ERVLB4_Xq27.3d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1942"; model_cov "2334"; model_pct "40.8"; chrX rmsk exon 147054223 147054659 956 - . gene_id "ERVLB4_Xq27.3d"; transcript_id "ERVLB4_Xq27.3d"; locus "ERVLB4_Xq27.3d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1942"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "57"; repStart "-13"; chrX rmsk exon 147055083 147055785 2687 - . gene_id "ERVLB4_Xq27.3d"; transcript_id "ERVLB4_Xq27.3d"; locus "ERVLB4_Xq27.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1942"; repClass "LTR"; repEnd "4346"; repFamily "ERVL"; repLeft "3611"; repStart "-1368"; chrX rmsk exon 147056158 147057637 7834 - . gene_id "ERVLB4_Xq27.3d"; transcript_id "ERVLB4_Xq27.3d"; locus "ERVLB4_Xq27.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1942"; repClass "LTR"; repEnd "3592"; repFamily "ERVL"; repLeft "2124"; repStart "-2122"; chrX rmsk exon 147057639 147057766 510 - . gene_id "ERVLB4_Xq27.3d"; transcript_id "ERVLB4_Xq27.3d"; locus "ERVLB4_Xq27.3d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1942"; repClass "LTR"; repEnd "726"; repFamily "ERVL"; repLeft "595"; repStart "-4988"; ### MER4_Xq27.3l ### chrX rmsk gene 147129500 147131669 . + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0956"; model_cov "1832"; model_pct "27.8"; chrX rmsk exon 147129500 147129678 1229 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0956"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "294"; chrX rmsk exon 147129682 147130221 2624 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0956"; repClass "LTR"; repEnd "587"; repFamily "ERV1"; repLeft "-6011"; repStart "1"; chrX rmsk exon 147130218 147130494 1414 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0956"; repClass "LTR"; repEnd "1281"; repFamily "ERV1"; repLeft "-5317"; repStart "1005"; chrX rmsk exon 147130478 147130556 382 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0956"; repClass "LTR"; repEnd "1571"; repFamily "ERV1"; repLeft "-5027"; repStart "1498"; chrX rmsk exon 147130555 147131258 4382 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0956"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1771"; chrX rmsk exon 147131508 147131669 1052 + . gene_id "MER4_Xq27.3l"; transcript_id "MER4_Xq27.3l"; locus "MER4_Xq27.3l"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0956"; repClass "LTR"; repEnd "2925"; repFamily "ERV1"; repLeft "-3673"; repStart "2752"; ### HERVH_Xq27.3b ### chrX rmsk gene 147131672 147134770 . - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1297"; model_cov "1878"; model_pct "24.3"; chrX rmsk exon 147131672 147132076 2076 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrX rmsk exon 147132077 147132508 2818 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chrX rmsk exon 147132505 147132939 1976 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "4046"; repFamily "ERV1"; repLeft "3673"; repStart "-3667"; chrX rmsk exon 147133188 147133631 2980 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "1278"; repFamily "ERV1"; repLeft "839"; repStart "-6435"; chrX rmsk exon 147133618 147134368 2751 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "637"; repFamily "ERV1"; repLeft "1"; repStart "-7076"; chrX rmsk exon 147134371 147134770 2404 - . gene_id "HERVH_Xq27.3b"; transcript_id "HERVH_Xq27.3b"; locus "HERVH_Xq27.3b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1297"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_Xq27.3e ### chrX rmsk gene 147228469 147229678 . + . gene_id "ERVLB4_Xq27.3e"; transcript_id "ERVLB4_Xq27.3e"; locus "ERVLB4_Xq27.3e"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1943"; model_cov "753"; model_pct "13.2"; chrX rmsk exon 147228469 147229184 3649 + . gene_id "ERVLB4_Xq27.3e"; transcript_id "ERVLB4_Xq27.3e"; locus "ERVLB4_Xq27.3e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1943"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4961"; chrX rmsk exon 147229185 147229678 2565 + . gene_id "ERVLB4_Xq27.3e"; transcript_id "ERVLB4_Xq27.3e"; locus "ERVLB4_Xq27.3e"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1943"; repClass "LTR"; repEnd "485"; repFamily "ERVL"; repLeft "-71"; repStart "1"; ### HML5_Xq27.3 ### chrX rmsk gene 147268579 147272025 . + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0141"; model_cov "3389"; model_pct "49.6"; chrX rmsk exon 147268579 147269030 2559 + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0141"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "2"; chrX rmsk exon 147269033 147269822 4606 + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0141"; repClass "LTR"; repEnd "811"; repFamily "ERVK"; repLeft "-6026"; repStart "3"; chrX rmsk exon 147269817 147270258 2937 + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0141"; repClass "LTR"; repEnd "2756"; repFamily "ERVK"; repLeft "-4081"; repStart "2328"; chrX rmsk exon 147270252 147271565 7350 + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0141"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "-1502"; repStart "3182"; chrX rmsk exon 147271567 147272025 2450 + . gene_id "HML5_Xq27.3"; transcript_id "HML5_Xq27.3"; locus "HML5_Xq27.3"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0141"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### PRIMAX_Xq27.3 ### chrX rmsk gene 147770461 147772011 . + . gene_id "PRIMAX_Xq27.3"; transcript_id "PRIMAX_Xq27.3"; locus "PRIMAX_Xq27.3"; category "internal"; intModel "PRIMAX-int"; locid "PRIMAX-int_0037"; model_cov "1028"; model_pct "25.1"; chrX rmsk exon 147770461 147770548 5140 + . gene_id "PRIMAX_Xq27.3"; transcript_id "PRIMAX_Xq27.3"; locus "PRIMAX_Xq27.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0037"; repClass "LTR"; repEnd "2753"; repFamily "ERV1"; repLeft "-1349"; repStart "2660"; chrX rmsk exon 147771086 147772011 5140 + . gene_id "PRIMAX_Xq27.3"; transcript_id "PRIMAX_Xq27.3"; locus "PRIMAX_Xq27.3"; repName "PRIMAX-int"; geneRegion "internal"; locid "PRIMAX-int_0037"; repClass "LTR"; repEnd "3689"; repFamily "ERV1"; repLeft "-413"; repStart "2754"; ### ERVLE_Xq27.3b ### chrX rmsk gene 147976664 147977985 . + . gene_id "ERVLE_Xq27.3b"; transcript_id "ERVLE_Xq27.3b"; locus "ERVLE_Xq27.3b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3762"; model_cov "1339"; model_pct "23.6"; chrX rmsk exon 147976664 147977985 3342 + . gene_id "ERVLE_Xq27.3b"; transcript_id "ERVLE_Xq27.3b"; locus "ERVLE_Xq27.3b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3762"; repClass "LTR"; repEnd "4957"; repFamily "ERVL"; repLeft "-710"; repStart "3618"; ### PRIMA41_Xq28 ### chrX rmsk gene 148371686 148374085 . - . gene_id "PRIMA41_Xq28"; transcript_id "PRIMA41_Xq28"; locus "PRIMA41_Xq28"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0179"; model_cov "2570"; model_pct "33.1"; chrX rmsk exon 148371686 148374085 1558 - . gene_id "PRIMA41_Xq28"; transcript_id "PRIMA41_Xq28"; locus "PRIMA41_Xq28"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0179"; repClass "LTR"; repEnd "6099"; repFamily "ERV1"; repLeft "3529"; repStart "-1657"; ### ERV316A3_Xq28a ### chrX rmsk gene 149069085 149073375 . + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2852"; model_cov "2878"; model_pct "55.1"; chrX rmsk exon 149069085 149069163 373 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "85"; repFamily "ERVL"; repLeft "-366"; repStart "5"; chrX rmsk exon 149069189 149069446 889 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "423"; repFamily "ERVL"; repLeft "-28"; repStart "159"; chrX rmsk exon 149069746 149071445 3588 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "2071"; repFamily "ERVL"; repLeft "-3155"; repStart "370"; chrX rmsk exon 149071585 149071717 418 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "3251"; repFamily "ERVL"; repLeft "-1975"; repStart "3120"; chrX rmsk exon 149071717 149072015 783 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "-1505"; repStart "3405"; chrX rmsk exon 149072034 149072592 1007 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "4657"; repFamily "ERVL"; repLeft "-569"; repStart "4098"; chrX rmsk exon 149072691 149072861 298 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "5155"; repFamily "ERVL"; repLeft "-71"; repStart "4984"; chrX rmsk exon 149072951 149073375 1454 + . gene_id "ERV316A3_Xq28a"; transcript_id "ERV316A3_Xq28a"; locus "ERV316A3_Xq28a"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2852"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "17"; ### HERVL18_Xq28 ### chrX rmsk gene 149073592 149080252 . + . gene_id "HERVL18_Xq28"; transcript_id "HERVL18_Xq28"; locus "HERVL18_Xq28"; category "prototype"; intModel "HERVL18-int"; locid "HERVL18-int_0151"; model_cov "6046"; model_pct "100.0"; chrX rmsk exon 149073592 149073908 1869 + . gene_id "HERVL18_Xq28"; transcript_id "HERVL18_Xq28"; locus "HERVL18_Xq28"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0151"; repClass "LTR"; repEnd "332"; repFamily "ERVL"; repLeft "-13"; repStart "1"; chrX rmsk exon 149073916 149079939 40735 + . gene_id "HERVL18_Xq28"; transcript_id "HERVL18_Xq28"; locus "HERVL18_Xq28"; repName "HERVL18-int"; geneRegion "internal"; locid "HERVL18-int_0151"; repClass "LTR"; repEnd "6047"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrX rmsk exon 149079941 149080252 1929 + . gene_id "HERVL18_Xq28"; transcript_id "HERVL18_Xq28"; locus "HERVL18_Xq28"; repName "LTR18C"; geneRegion "ltr"; locid "HERVL18-int_0151"; repClass "LTR"; repEnd "326"; repFamily "ERVL"; repLeft "-19"; repStart "1"; ### ERVLE_Xq28a ### chrX rmsk gene 149086614 149091259 . + . gene_id "ERVLE_Xq28a"; transcript_id "ERVLE_Xq28a"; locus "ERVLE_Xq28a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3764"; model_cov "1349"; model_pct "23.8"; chrX rmsk exon 149086614 149086801 782 + . gene_id "ERVLE_Xq28a"; transcript_id "ERVLE_Xq28a"; locus "ERVLE_Xq28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3764"; repClass "LTR"; repEnd "4199"; repFamily "ERVL"; repLeft "-1468"; repStart "4011"; chrX rmsk exon 149087276 149087669 1064 + . gene_id "ERVLE_Xq28a"; transcript_id "ERVLE_Xq28a"; locus "ERVLE_Xq28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3764"; repClass "LTR"; repEnd "4627"; repFamily "ERVL"; repLeft "-1040"; repStart "4216"; chrX rmsk exon 149089998 149090189 426 + . gene_id "ERVLE_Xq28a"; transcript_id "ERVLE_Xq28a"; locus "ERVLE_Xq28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3764"; repClass "LTR"; repEnd "4842"; repFamily "ERVL"; repLeft "-825"; repStart "4636"; chrX rmsk exon 149090829 149091259 847 + . gene_id "ERVLE_Xq28a"; transcript_id "ERVLE_Xq28a"; locus "ERVLE_Xq28a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3764"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-365"; repStart "4758"; ### HERVH_Xq28a ### chrX rmsk gene 149315606 149320415 . + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1298"; model_cov "4254"; model_pct "55.2"; chrX rmsk exon 149315606 149316032 3526 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrX rmsk exon 149316079 149319061 20729 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "45"; chrX rmsk exon 149319056 149319202 831 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrX rmsk exon 149319193 149319695 3460 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3492"; chrX rmsk exon 149319698 149320355 4272 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrX rmsk exon 149320383 149320415 281 + . gene_id "HERVH_Xq28a"; transcript_id "HERVH_Xq28a"; locus "HERVH_Xq28a"; repName "LTR7Y"; geneRegion "ltr"; locid "HERVH-int_1298"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "440"; ### ERVL_Xq28a ### chrX rmsk gene 149352972 149355687 . + . gene_id "ERVL_Xq28a"; transcript_id "ERVL_Xq28a"; locus "ERVL_Xq28a"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0506"; model_cov "2974"; model_pct "51.7"; chrX rmsk exon 149352972 149355687 10336 + . gene_id "ERVL_Xq28a"; transcript_id "ERVL_Xq28a"; locus "ERVL_Xq28a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0506"; repClass "LTR"; repEnd "4855"; repFamily "ERVL"; repLeft "-902"; repStart "1881"; ### ERVL_Xq28b ### chrX rmsk gene 149361072 149362740 . + . gene_id "ERVL_Xq28b"; transcript_id "ERVL_Xq28b"; locus "ERVL_Xq28b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0507"; model_cov "869"; model_pct "15.1"; chrX rmsk exon 149361072 149361901 4897 + . gene_id "ERVL_Xq28b"; transcript_id "ERVL_Xq28b"; locus "ERVL_Xq28b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0507"; repClass "LTR"; repEnd "5703"; repFamily "ERVL"; repLeft "-54"; repStart "4885"; chrX rmsk exon 149362210 149362273 4897 + . gene_id "ERVL_Xq28b"; transcript_id "ERVL_Xq28b"; locus "ERVL_Xq28b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0507"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "-2"; repStart "5704"; chrX rmsk exon 149362276 149362740 3281 + . gene_id "ERVL_Xq28b"; transcript_id "ERVL_Xq28b"; locus "ERVL_Xq28b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0507"; repClass "LTR"; repEnd "465"; repFamily "ERVL"; repLeft "-55"; repStart "1"; ### ERV316A3_Xq28b ### chrX rmsk gene 149523431 149524641 . + . gene_id "ERV316A3_Xq28b"; transcript_id "ERV316A3_Xq28b"; locus "ERV316A3_Xq28b"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2853"; model_cov "545"; model_pct "10.4"; chrX rmsk exon 149523431 149523520 333 + . gene_id "ERV316A3_Xq28b"; transcript_id "ERV316A3_Xq28b"; locus "ERV316A3_Xq28b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2853"; repClass "LTR"; repEnd "4586"; repFamily "ERVL"; repLeft "-640"; repStart "4503"; chrX rmsk exon 149523823 149524287 1664 + . gene_id "ERV316A3_Xq28b"; transcript_id "ERV316A3_Xq28b"; locus "ERV316A3_Xq28b"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2853"; repClass "LTR"; repEnd "5180"; repFamily "ERVL"; repLeft "-46"; repStart "4718"; chrX rmsk exon 149524342 149524451 253 + . gene_id "ERV316A3_Xq28b"; transcript_id "ERV316A3_Xq28b"; locus "ERV316A3_Xq28b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2853"; repClass "LTR"; repEnd "117"; repFamily "ERVL"; repLeft "-321"; repStart "1"; chrX rmsk exon 149524466 149524641 423 + . gene_id "ERV316A3_Xq28b"; transcript_id "ERV316A3_Xq28b"; locus "ERV316A3_Xq28b"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2853"; repClass "LTR"; repEnd "362"; repFamily "ERVL"; repLeft "-76"; repStart "196"; ### ERV316A3_Xq28c ### chrX rmsk gene 149662317 149665467 . - . gene_id "ERV316A3_Xq28c"; transcript_id "ERV316A3_Xq28c"; locus "ERV316A3_Xq28c"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2854"; model_cov "3047"; model_pct "58.3"; chrX rmsk exon 149662317 149662821 1565 - . gene_id "ERV316A3_Xq28c"; transcript_id "ERV316A3_Xq28c"; locus "ERV316A3_Xq28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2854"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "4660"; repStart "-54"; chrX rmsk exon 149663057 149664477 3658 - . gene_id "ERV316A3_Xq28c"; transcript_id "ERV316A3_Xq28c"; locus "ERV316A3_Xq28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2854"; repClass "LTR"; repEnd "4606"; repFamily "ERVL"; repLeft "3181"; repStart "-620"; chrX rmsk exon 149664480 149665467 2169 - . gene_id "ERV316A3_Xq28c"; transcript_id "ERV316A3_Xq28c"; locus "ERV316A3_Xq28c"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2854"; repClass "LTR"; repEnd "2762"; repFamily "ERVL"; repLeft "1652"; repStart "-2464"; ### HML5_Xq28a ### chrX rmsk gene 149675591 149681132 . - . gene_id "HML5_Xq28a"; transcript_id "HML5_Xq28a"; locus "HML5_Xq28a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0142"; model_cov "5061"; model_pct "74.0"; chrX rmsk exon 149675591 149676062 2912 - . gene_id "HML5_Xq28a"; transcript_id "HML5_Xq28a"; locus "HML5_Xq28a"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0142"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 149676063 149681132 41336 - . gene_id "HML5_Xq28a"; transcript_id "HML5_Xq28a"; locus "HML5_Xq28a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0142"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "1776"; repStart "0"; ### HML5_Xq28b ### chrX rmsk gene 149719916 149727680 . + . gene_id "HML5_Xq28b"; transcript_id "HML5_Xq28b"; locus "HML5_Xq28b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0143"; model_cov "6836"; model_pct "100.0"; chrX rmsk exon 149719916 149720386 2951 + . gene_id "HML5_Xq28b"; transcript_id "HML5_Xq28b"; locus "HML5_Xq28b"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0143"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 149720387 149727208 48035 + . gene_id "HML5_Xq28b"; transcript_id "HML5_Xq28b"; locus "HML5_Xq28b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0143"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 149727209 149727680 2920 + . gene_id "HML5_Xq28b"; transcript_id "HML5_Xq28b"; locus "HML5_Xq28b"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0143"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_Xq28d ### chrX rmsk gene 149737803 149740953 . + . gene_id "ERV316A3_Xq28d"; transcript_id "ERV316A3_Xq28d"; locus "ERV316A3_Xq28d"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2855"; model_cov "3047"; model_pct "58.3"; chrX rmsk exon 149737803 149738790 2196 + . gene_id "ERV316A3_Xq28d"; transcript_id "ERV316A3_Xq28d"; locus "ERV316A3_Xq28d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2855"; repClass "LTR"; repEnd "2762"; repFamily "ERVL"; repLeft "-2464"; repStart "1652"; chrX rmsk exon 149738793 149740213 3682 + . gene_id "ERV316A3_Xq28d"; transcript_id "ERV316A3_Xq28d"; locus "ERV316A3_Xq28d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2855"; repClass "LTR"; repEnd "4606"; repFamily "ERVL"; repLeft "-620"; repStart "3181"; chrX rmsk exon 149740449 149740953 1583 + . gene_id "ERV316A3_Xq28d"; transcript_id "ERV316A3_Xq28d"; locus "ERV316A3_Xq28d"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2855"; repClass "LTR"; repEnd "5172"; repFamily "ERVL"; repLeft "-54"; repStart "4660"; ### HERVL_Xq28a ### chrX rmsk gene 149750662 149753976 . - . gene_id "HERVL_Xq28a"; transcript_id "HERVL_Xq28a"; locus "HERVL_Xq28a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1414"; model_cov "2916"; model_pct "51.6"; chrX rmsk exon 149750662 149750734 22895 - . gene_id "HERVL_Xq28a"; transcript_id "HERVL_Xq28a"; locus "HERVL_Xq28a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1414"; repClass "LTR"; repEnd "2920"; repFamily "ERVL"; repLeft "2867"; repStart "-2734"; chrX rmsk exon 149751043 149753893 22895 - . gene_id "HERVL_Xq28a"; transcript_id "HERVL_Xq28a"; locus "HERVL_Xq28a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1414"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "3"; repStart "-2788"; chrX rmsk exon 149753897 149753976 338 - . gene_id "HERVL_Xq28a"; transcript_id "HERVL_Xq28a"; locus "HERVL_Xq28a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1414"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "368"; repStart "0"; ### HERVIP10FH_Xq28 ### chrX rmsk gene 149825009 149831569 . + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; category "unknown"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0215"; model_cov "4034"; model_pct "79.1"; chrX rmsk exon 149825009 149825535 3309 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "2"; chrX rmsk exon 149825557 149827142 8209 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "-1100"; repFamily "ERV1"; repLeft "-6202"; repStart "-2658"; chrX rmsk exon 149827120 149829097 11493 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "2401"; repFamily "ERV1"; repLeft "-2701"; repStart "687"; chrX rmsk exon 149829103 149829610 3810 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "3"; chrX rmsk exon 149830852 149831435 3317 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "2720"; repFamily "ERV1"; repLeft "-2382"; repStart "2128"; chrX rmsk exon 149831405 149831569 912 + . gene_id "HERVIP10FH_Xq28"; transcript_id "HERVIP10FH_Xq28"; locus "HERVIP10FH_Xq28"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0215"; repClass "LTR"; repEnd "2653"; repFamily "ERV1"; repLeft "-2449"; repStart "2483"; ### HARLEQUIN_Xq28 ### chrX rmsk gene 149834195 149836615 . + . gene_id "HARLEQUIN_Xq28"; transcript_id "HARLEQUIN_Xq28"; locus "HARLEQUIN_Xq28"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0189"; model_cov "1877"; model_pct "27.2"; chrX rmsk exon 149834195 149836615 15266 + . gene_id "HARLEQUIN_Xq28"; transcript_id "HARLEQUIN_Xq28"; locus "HARLEQUIN_Xq28"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0189"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "-2739"; repStart "2280"; ### MER34B_Xq28 ### chrX rmsk gene 149850536 149857905 . + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0292"; model_cov "3337"; model_pct "62.3"; chrX rmsk exon 149850536 149850662 373 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "-347"; repFamily "ERV1"; repLeft "-5703"; repStart "-487"; chrX rmsk exon 149851853 149851928 351 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "-209"; repFamily "ERV1"; repLeft "-5565"; repStart "-284"; chrX rmsk exon 149853056 149853478 1472 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "253"; repFamily "ERV1"; repLeft "-5103"; repStart "-160"; chrX rmsk exon 149853535 149853698 425 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-4792"; repStart "397"; chrX rmsk exon 149854326 149854423 3672 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "2158"; repFamily "ERV1"; repLeft "-3198"; repStart "2035"; chrX rmsk exon 149854639 149855960 3672 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "3458"; repFamily "ERV1"; repLeft "-1898"; repStart "2159"; chrX rmsk exon 149856249 149856337 3672 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "3540"; repFamily "ERV1"; repLeft "-1816"; repStart "3459"; chrX rmsk exon 149856650 149857905 3672 + . gene_id "MER34B_Xq28"; transcript_id "MER34B_Xq28"; locus "MER34B_Xq28"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0292"; repClass "LTR"; repEnd "4826"; repFamily "ERV1"; repLeft "-530"; repStart "3787"; ### MER4_Xq28a ### chrX rmsk gene 149893773 149896952 . - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; category "internal"; intModel "MER4-int"; locid "MER4-int_0960"; model_cov "3931"; model_pct "59.6"; chrX rmsk exon 149893773 149893860 6042 - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0960"; repClass "LTR"; repEnd "4082"; repFamily "ERV1"; repLeft "3998"; repStart "-2516"; chrX rmsk exon 149894164 149895905 6042 - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0960"; repClass "LTR"; repEnd "3997"; repFamily "ERV1"; repLeft "1145"; repStart "-2601"; chrX rmsk exon 149895969 149896139 2415 - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0960"; repClass "LTR"; repEnd "1304"; repFamily "ERV1"; repLeft "1153"; repStart "-5294"; chrX rmsk exon 149896171 149896264 2415 - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0960"; repClass "LTR"; repEnd "1152"; repFamily "ERV1"; repLeft "1118"; repStart "-5446"; chrX rmsk exon 149896330 149896952 2415 - . gene_id "MER4_Xq28a"; transcript_id "MER4_Xq28a"; locus "MER4_Xq28a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0960"; repClass "LTR"; repEnd "1117"; repFamily "ERV1"; repLeft "307"; repStart "-5481"; ### ERVLE_Xq28b ### chrX rmsk gene 150349971 150350670 . - . gene_id "ERVLE_Xq28b"; transcript_id "ERVLE_Xq28b"; locus "ERVLE_Xq28b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3765"; model_cov "755"; model_pct "13.3"; chrX rmsk exon 150349971 150350670 784 - . gene_id "ERVLE_Xq28b"; transcript_id "ERVLE_Xq28b"; locus "ERVLE_Xq28b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3765"; repClass "LTR"; repEnd "790"; repFamily "ERVL"; repLeft "35"; repStart "-4877"; ### MER61_Xq28 ### chrX rmsk gene 151536299 151538768 . - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0426"; model_cov "2039"; model_pct "39.1"; chrX rmsk exon 151536299 151537590 9360 - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0426"; repClass "LTR"; repEnd "2252"; repFamily "ERV1"; repLeft "959"; repStart "-2965"; chrX rmsk exon 151537573 151538013 2642 - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0426"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "421"; repStart "-4377"; chrX rmsk exon 151538033 151538155 568 - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0426"; repClass "LTR"; repEnd "454"; repFamily "ERV1"; repLeft "343"; repStart "-4763"; chrX rmsk exon 151538156 151538376 823 - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0426"; repClass "LTR"; repEnd "217"; repFamily "ERV1"; repLeft "1"; repStart "-5000"; chrX rmsk exon 151538383 151538768 2121 - . gene_id "MER61_Xq28"; transcript_id "MER61_Xq28"; locus "MER61_Xq28"; repName "MER61C"; geneRegion "ltr"; locid "MER61-int_0426"; repClass "LTR"; repEnd "397"; repFamily "ERV1"; repLeft "14"; repStart "-31"; ### MER4_Xq28b ### chrX rmsk gene 151878970 151886674 . + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; category "internal"; intModel "MER4-int"; locid "MER4-int_0962"; model_cov "5700"; model_pct "86.4"; chrX rmsk exon 151878970 151879459 2722 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "159"; chrX rmsk exon 151879448 151879529 451 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "822"; repFamily "ERV1"; repLeft "-5776"; repStart "748"; chrX rmsk exon 151879674 151879846 1789 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "1176"; repFamily "ERV1"; repLeft "-5422"; repStart "993"; chrX rmsk exon 151879872 151880118 1789 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "1412"; repFamily "ERV1"; repLeft "-5186"; repStart "1177"; chrX rmsk exon 151880115 151880436 5250 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "1900"; repFamily "ERV1"; repLeft "-4698"; repStart "1585"; chrX rmsk exon 151880727 151881300 5250 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1901"; chrX rmsk exon 151881539 151881861 1649 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "3062"; repFamily "ERV1"; repLeft "-3536"; repStart "2736"; chrX rmsk exon 151883043 151883562 1615 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "3610"; repFamily "ERV1"; repLeft "-2988"; repStart "3072"; chrX rmsk exon 151883595 151883667 1615 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "3685"; repFamily "ERV1"; repLeft "-2913"; repStart "3611"; chrX rmsk exon 151883662 151884221 6619 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "4426"; repFamily "ERV1"; repLeft "-2172"; repStart "3799"; chrX rmsk exon 151884630 151886674 12626 + . gene_id "MER4_Xq28b"; transcript_id "MER4_Xq28b"; locus "MER4_Xq28b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0962"; repClass "LTR"; repEnd "6498"; repFamily "ERV1"; repLeft "-100"; repStart "4291"; ### ERV316A3_Xq28e ### chrX rmsk gene 151944470 151945569 . + . gene_id "ERV316A3_Xq28e"; transcript_id "ERV316A3_Xq28e"; locus "ERV316A3_Xq28e"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2856"; model_cov "1138"; model_pct "21.8"; chrX rmsk exon 151944470 151945569 2350 + . gene_id "ERV316A3_Xq28e"; transcript_id "ERV316A3_Xq28e"; locus "ERV316A3_Xq28e"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2856"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "-3552"; repStart "536"; ### ERV316A3_Xq28f ### chrX rmsk gene 151945757 151949205 . - . gene_id "ERV316A3_Xq28f"; transcript_id "ERV316A3_Xq28f"; locus "ERV316A3_Xq28f"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2857"; model_cov "2989"; model_pct "57.2"; chrX rmsk exon 151945757 151947850 7275 - . gene_id "ERV316A3_Xq28f"; transcript_id "ERV316A3_Xq28f"; locus "ERV316A3_Xq28f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2857"; repClass "LTR"; repEnd "3625"; repFamily "ERVL"; repLeft "1349"; repStart "-1601"; chrX rmsk exon 151948214 151948783 7275 - . gene_id "ERV316A3_Xq28f"; transcript_id "ERV316A3_Xq28f"; locus "ERV316A3_Xq28f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2857"; repClass "LTR"; repEnd "1348"; repFamily "ERVL"; repLeft "771"; repStart "-3878"; chrX rmsk exon 151949084 151949205 7275 - . gene_id "ERV316A3_Xq28f"; transcript_id "ERV316A3_Xq28f"; locus "ERV316A3_Xq28f"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2857"; repClass "LTR"; repEnd "770"; repFamily "ERVL"; repLeft "634"; repStart "-4456"; ### ERV316A3_Xq28g ### chrX rmsk gene 151949288 151949825 . - . gene_id "ERV316A3_Xq28g"; transcript_id "ERV316A3_Xq28g"; locus "ERV316A3_Xq28g"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2858"; model_cov "606"; model_pct "11.6"; chrX rmsk exon 151949288 151949825 7275 - . gene_id "ERV316A3_Xq28g"; transcript_id "ERV316A3_Xq28g"; locus "ERV316A3_Xq28g"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2858"; repClass "LTR"; repEnd "770"; repFamily "ERVL"; repLeft "164"; repStart "-4456"; ### ERV316A3_Xq28h ### chrX rmsk gene 151950007 151951679 . + . gene_id "ERV316A3_Xq28h"; transcript_id "ERV316A3_Xq28h"; locus "ERV316A3_Xq28h"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2859"; model_cov "1298"; model_pct "24.8"; chrX rmsk exon 151950007 151951275 2596 + . gene_id "ERV316A3_Xq28h"; transcript_id "ERV316A3_Xq28h"; locus "ERV316A3_Xq28h"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2859"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-1"; repStart "3927"; chrX rmsk exon 151951281 151951679 701 + . gene_id "ERV316A3_Xq28h"; transcript_id "ERV316A3_Xq28h"; locus "ERV316A3_Xq28h"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2859"; repClass "LTR"; repEnd "449"; repFamily "ERVL"; repLeft "-2"; repStart "5"; ### MER4_Xq28c ### chrX rmsk gene 152031258 152033483 . - . gene_id "MER4_Xq28c"; transcript_id "MER4_Xq28c"; locus "MER4_Xq28c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0963"; model_cov "1836"; model_pct "27.8"; chrX rmsk exon 152031258 152031705 3342 - . gene_id "MER4_Xq28c"; transcript_id "MER4_Xq28c"; locus "MER4_Xq28c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0963"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 152031707 152033483 11113 - . gene_id "MER4_Xq28c"; transcript_id "MER4_Xq28c"; locus "MER4_Xq28c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0963"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "4762"; repStart "0"; ### MER4_Xq28d ### chrX rmsk gene 152036068 152037889 . - . gene_id "MER4_Xq28d"; transcript_id "MER4_Xq28d"; locus "MER4_Xq28d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0964"; model_cov "1996"; model_pct "30.3"; chrX rmsk exon 152036068 152036976 5271 - . gene_id "MER4_Xq28d"; transcript_id "MER4_Xq28d"; locus "MER4_Xq28d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0964"; repClass "LTR"; repEnd "4775"; repFamily "ERV1"; repLeft "3837"; repStart "-1823"; chrX rmsk exon 152036971 152037889 8753 - . gene_id "MER4_Xq28d"; transcript_id "MER4_Xq28d"; locus "MER4_Xq28d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0964"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "2628"; repStart "-2912"; ### MER4_Xq28e ### chrX rmsk gene 152038125 152040818 . - . gene_id "MER4_Xq28e"; transcript_id "MER4_Xq28e"; locus "MER4_Xq28e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0965"; model_cov "2436"; model_pct "36.9"; chrX rmsk exon 152038125 152039538 8753 - . gene_id "MER4_Xq28e"; transcript_id "MER4_Xq28e"; locus "MER4_Xq28e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0965"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "2055"; repStart "-2912"; chrX rmsk exon 152039717 152040377 3489 - . gene_id "MER4_Xq28e"; transcript_id "MER4_Xq28e"; locus "MER4_Xq28e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0965"; repClass "LTR"; repEnd "806"; repFamily "ERV1"; repLeft "1"; repStart "-5792"; chrX rmsk exon 152040381 152040818 2926 - . gene_id "MER4_Xq28e"; transcript_id "MER4_Xq28e"; locus "MER4_Xq28e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0965"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Xq28c ### chrX rmsk gene 152068211 152070575 . + . gene_id "ERVLE_Xq28c"; transcript_id "ERVLE_Xq28c"; locus "ERVLE_Xq28c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3767"; model_cov "1638"; model_pct "28.9"; chrX rmsk exon 152068211 152069304 3697 + . gene_id "ERVLE_Xq28c"; transcript_id "ERVLE_Xq28c"; locus "ERVLE_Xq28c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3767"; repClass "LTR"; repEnd "4537"; repFamily "ERVL"; repLeft "-1130"; repStart "3366"; chrX rmsk exon 152069780 152069980 1389 + . gene_id "ERVLE_Xq28c"; transcript_id "ERVLE_Xq28c"; locus "ERVLE_Xq28c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3767"; repClass "LTR"; repEnd "5040"; repFamily "ERVL"; repLeft "-627"; repStart "4840"; chrX rmsk exon 152070328 152070575 1389 + . gene_id "ERVLE_Xq28c"; transcript_id "ERVLE_Xq28c"; locus "ERVLE_Xq28c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3767"; repClass "LTR"; repEnd "5308"; repFamily "ERVL"; repLeft "-359"; repStart "5041"; ### MER41_Xq28a ### chrX rmsk gene 152684222 152686869 . + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0628"; model_cov "1393"; model_pct "23.4"; chrX rmsk exon 152684222 152684371 1048 + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0628"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "0"; repStart "481"; chrX rmsk exon 152684372 152684458 572 + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0628"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; chrX rmsk exon 152684454 152685002 4351 + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0628"; repClass "LTR"; repEnd "5188"; repFamily "ERV1"; repLeft "-758"; repStart "4639"; chrX rmsk exon 152685667 152686413 5242 + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0628"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5187"; chrX rmsk exon 152686414 152686869 4005 + . gene_id "MER41_Xq28a"; transcript_id "MER41_Xq28a"; locus "MER41_Xq28a"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0628"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "-166"; repStart "1"; ### MER41_Xq28b ### chrX rmsk gene 152781609 152784254 . - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0629"; model_cov "1393"; model_pct "23.4"; chrX rmsk exon 152781609 152782064 4005 - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0629"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "2"; repStart "-166"; chrX rmsk exon 152782065 152782811 5242 - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0629"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "5187"; repStart "-2"; chrX rmsk exon 152783474 152784022 4351 - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0629"; repClass "LTR"; repEnd "5188"; repFamily "ERV1"; repLeft "4639"; repStart "-758"; chrX rmsk exon 152784018 152784104 572 - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0629"; repClass "LTR"; repEnd "88"; repFamily "ERV1"; repLeft "1"; repStart "-5858"; chrX rmsk exon 152784105 152784254 1048 - . gene_id "MER41_Xq28b"; transcript_id "MER41_Xq28b"; locus "MER41_Xq28b"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0629"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "481"; repStart "0"; ### MER41_Xq28c ### chrX rmsk gene 153010207 153014590 . - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0630"; model_cov "5441"; model_pct "91.5"; chrX rmsk exon 153010207 153010671 3810 - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0630"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "1"; repStart "-88"; chrX rmsk exon 153010717 153011446 7136 - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0630"; repClass "LTR"; repEnd "5899"; repFamily "ERV1"; repLeft "5138"; repStart "-47"; chrX rmsk exon 153011736 153014125 9232 - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0630"; repClass "LTR"; repEnd "5114"; repFamily "ERV1"; repLeft "925"; repStart "-832"; chrX rmsk exon 153014122 153014242 820 - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0630"; repClass "LTR"; repEnd "2017"; repFamily "ERV1"; repLeft "1898"; repStart "-3929"; chrX rmsk exon 153014238 153014590 2373 - . gene_id "MER41_Xq28c"; transcript_id "MER41_Xq28c"; locus "MER41_Xq28c"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0630"; repClass "LTR"; repEnd "1764"; repFamily "ERV1"; repLeft "1392"; repStart "-4182"; ### ERV316A3_Xq28i ### chrX rmsk gene 153034407 153039482 . + . gene_id "ERV316A3_Xq28i"; transcript_id "ERV316A3_Xq28i"; locus "ERV316A3_Xq28i"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2861"; model_cov "3080"; model_pct "58.9"; chrX rmsk exon 153034407 153034705 1345 + . gene_id "ERV316A3_Xq28i"; transcript_id "ERV316A3_Xq28i"; locus "ERV316A3_Xq28i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2861"; repClass "LTR"; repEnd "2425"; repFamily "ERVL"; repLeft "-2801"; repStart "2140"; chrX rmsk exon 153035930 153038602 9883 + . gene_id "ERV316A3_Xq28i"; transcript_id "ERV316A3_Xq28i"; locus "ERV316A3_Xq28i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2861"; repClass "LTR"; repEnd "5122"; repFamily "ERVL"; repLeft "-104"; repStart "2428"; chrX rmsk exon 153038922 153039027 9883 + . gene_id "ERV316A3_Xq28i"; transcript_id "ERV316A3_Xq28i"; locus "ERV316A3_Xq28i"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2861"; repClass "LTR"; repEnd "5224"; repFamily "ERVL"; repLeft "-2"; repStart "5123"; chrX rmsk exon 153039030 153039482 1614 + . gene_id "ERV316A3_Xq28i"; transcript_id "ERV316A3_Xq28i"; locus "ERV316A3_Xq28i"; repName "LTR16B1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2861"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_Xq28b ### chrX rmsk gene 153094556 153101476 . - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1299"; model_cov "6158"; model_pct "79.8"; chrX rmsk exon 153094556 153094994 3008 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 153094995 153095469 6260 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7240"; repStart "0"; chrX rmsk exon 153095499 153095988 6260 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "7239"; repFamily "ERV1"; repLeft "6741"; repStart "-474"; chrX rmsk exon 153095978 153100571 15156 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "6603"; repFamily "ERV1"; repLeft "1861"; repStart "-1110"; chrX rmsk exon 153100631 153101037 1004 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chrX rmsk exon 153101038 153101476 3097 - . gene_id "HERVH_Xq28b"; transcript_id "HERVH_Xq28b"; locus "HERVH_Xq28b"; repName "LTR7C"; geneRegion "ltr"; locid "HERVH-int_1299"; repClass "LTR"; repEnd "471"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Xq28a ### chrX rmsk gene 153190354 153191107 . + . gene_id "ERVLB4_Xq28a"; transcript_id "ERVLB4_Xq28a"; locus "ERVLB4_Xq28a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1945"; model_cov "752"; model_pct "13.2"; chrX rmsk exon 153190354 153191107 4370 + . gene_id "ERVLB4_Xq28a"; transcript_id "ERVLB4_Xq28a"; locus "ERVLB4_Xq28a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1945"; repClass "LTR"; repEnd "5337"; repFamily "ERVL"; repLeft "-377"; repStart "4585"; ### ERVLE_Xq28d ### chrX rmsk gene 153831913 153833018 . - . gene_id "ERVLE_Xq28d"; transcript_id "ERVLE_Xq28d"; locus "ERVLE_Xq28d"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3772"; model_cov "1042"; model_pct "18.4"; chrX rmsk exon 153831913 153832482 1096 - . gene_id "ERVLE_Xq28d"; transcript_id "ERVLE_Xq28d"; locus "ERVLE_Xq28d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3772"; repClass "LTR"; repEnd "4239"; repFamily "ERVL"; repLeft "3627"; repStart "-1428"; chrX rmsk exon 153832561 153832642 258 - . gene_id "ERVLE_Xq28d"; transcript_id "ERVLE_Xq28d"; locus "ERVLE_Xq28d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3772"; repClass "LTR"; repEnd "3833"; repFamily "ERVL"; repLeft "3749"; repStart "-1834"; chrX rmsk exon 153832667 153833018 912 - . gene_id "ERVLE_Xq28d"; transcript_id "ERVLE_Xq28d"; locus "ERVLE_Xq28d"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3772"; repClass "LTR"; repEnd "3335"; repFamily "ERVL"; repLeft "2989"; repStart "-2332"; ### ERVLE_Xq28e ### chrX rmsk gene 154333197 154333802 . - . gene_id "ERVLE_Xq28e"; transcript_id "ERVLE_Xq28e"; locus "ERVLE_Xq28e"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3775"; model_cov "610"; model_pct "10.8"; chrX rmsk exon 154333197 154333802 686 - . gene_id "ERVLE_Xq28e"; transcript_id "ERVLE_Xq28e"; locus "ERVLE_Xq28e"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3775"; repClass "LTR"; repEnd "716"; repFamily "ERVL"; repLeft "106"; repStart "-4951"; ### HML2_Xq28a ### chrX rmsk gene 154588662 154591282 . + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0127"; model_cov "805"; model_pct "10.7"; chrX rmsk exon 154588662 154589649 8253 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 154589650 154591282 4975 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "3812"; repFamily "ERVK"; repLeft "-3724"; repStart "3007"; ### HML2_Xq28b ### chrX rmsk gene 154608423 154615762 . - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0128"; model_cov "7445"; model_pct "98.8"; chrX rmsk exon 154608423 154609415 8174 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 154609505 154614774 22434 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "2"; repStart "-89"; chrX rmsk exon 154614775 154615762 8243 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLE_Xq28f ### chrX rmsk gene 154752057 154753704 . - . gene_id "ERVLE_Xq28f"; transcript_id "ERVLE_Xq28f"; locus "ERVLE_Xq28f"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3776"; model_cov "1682"; model_pct "29.7"; chrX rmsk exon 154752057 154752184 429 - . gene_id "ERVLE_Xq28f"; transcript_id "ERVLE_Xq28f"; locus "ERVLE_Xq28f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3776"; repClass "LTR"; repEnd "4654"; repFamily "ERVL"; repLeft "4465"; repStart "-1013"; chrX rmsk exon 154752202 154752458 848 - . gene_id "ERVLE_Xq28f"; transcript_id "ERVLE_Xq28f"; locus "ERVLE_Xq28f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3776"; repClass "LTR"; repEnd "4404"; repFamily "ERVL"; repLeft "4122"; repStart "-1263"; chrX rmsk exon 154752611 154753704 2861 - . gene_id "ERVLE_Xq28f"; transcript_id "ERVLE_Xq28f"; locus "ERVLE_Xq28f"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3776"; repClass "LTR"; repEnd "3548"; repFamily "ERVL"; repLeft "2337"; repStart "-2119"; ### ERVLE_Xq28g ### chrX rmsk gene 154757246 154758861 . + . gene_id "ERVLE_Xq28g"; transcript_id "ERVLE_Xq28g"; locus "ERVLE_Xq28g"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3777"; model_cov "672"; model_pct "11.9"; chrX rmsk exon 154757246 154757499 1027 + . gene_id "ERVLE_Xq28g"; transcript_id "ERVLE_Xq28g"; locus "ERVLE_Xq28g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3777"; repClass "LTR"; repEnd "2349"; repFamily "ERVL"; repLeft "-3318"; repStart "2099"; chrX rmsk exon 154758391 154758524 433 + . gene_id "ERVLE_Xq28g"; transcript_id "ERVLE_Xq28g"; locus "ERVLE_Xq28g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3777"; repClass "LTR"; repEnd "2488"; repFamily "ERVL"; repLeft "-3179"; repStart "2355"; chrX rmsk exon 154758583 154758861 779 + . gene_id "ERVLE_Xq28g"; transcript_id "ERVLE_Xq28g"; locus "ERVLE_Xq28g"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3777"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "-772"; repStart "4606"; ### ERVLE_Xq28h ### chrX rmsk gene 154760989 154762137 . - . gene_id "ERVLE_Xq28h"; transcript_id "ERVLE_Xq28h"; locus "ERVLE_Xq28h"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3778"; model_cov "956"; model_pct "16.9"; chrX rmsk exon 154760989 154761220 426 - . gene_id "ERVLE_Xq28h"; transcript_id "ERVLE_Xq28h"; locus "ERVLE_Xq28h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3778"; repClass "LTR"; repEnd "3355"; repFamily "ERVL"; repLeft "3119"; repStart "-2312"; chrX rmsk exon 154761195 154761467 788 - . gene_id "ERVLE_Xq28h"; transcript_id "ERVLE_Xq28h"; locus "ERVLE_Xq28h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3778"; repClass "LTR"; repEnd "2973"; repFamily "ERVL"; repLeft "2667"; repStart "-2694"; chrX rmsk exon 154761757 154762137 778 - . gene_id "ERVLE_Xq28h"; transcript_id "ERVLE_Xq28h"; locus "ERVLE_Xq28h"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3778"; repClass "LTR"; repEnd "1833"; repFamily "ERVL"; repLeft "1419"; repStart "-3834"; ### MER4_Xq28f ### chrX rmsk gene 154812532 154821960 . - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0966"; model_cov "5786"; model_pct "87.7"; chrX rmsk exon 154812532 154812883 1429 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0966"; repClass "LTR"; repEnd "529"; repFamily "ERV1"; repLeft "124"; repStart "-135"; chrX rmsk exon 154812925 154813042 1193 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_0966"; repClass "LTR"; repEnd "123"; repFamily "ERV1"; repLeft "2"; repStart "-541"; chrX rmsk exon 154813046 154816311 18200 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "3291"; repStart "0"; chrX rmsk exon 154817584 154818265 3899 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "2042"; repFamily "ERV1"; repLeft "1377"; repStart "-4556"; chrX rmsk exon 154818550 154819817 7285 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "1376"; repFamily "ERV1"; repLeft "29"; repStart "-5222"; chrX rmsk exon 154819817 154819924 1401 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "2373"; repStart "-4107"; chrX rmsk exon 154820418 154820672 1401 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "2372"; repFamily "ERV1"; repLeft "2112"; repStart "-4226"; chrX rmsk exon 154820724 154820816 377 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0966"; repClass "LTR"; repEnd "-633"; repFamily "ERV1"; repLeft "-722"; repStart "-7231"; chrX rmsk exon 154821358 154821960 3572 - . gene_id "MER4_Xq28f"; transcript_id "MER4_Xq28f"; locus "MER4_Xq28f"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_0966"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### ERVLB4_Xq28b ### chrX rmsk gene 154854156 154859238 . + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1946"; model_cov "3689"; model_pct "64.6"; chrX rmsk exon 154854156 154854590 2779 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "484"; repFamily "ERVL"; repLeft "-72"; repStart "1"; chrX rmsk exon 154854620 154854672 2779 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "485"; chrX rmsk exon 154854673 154854849 13869 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "181"; repFamily "ERVL"; repLeft "-5533"; repStart "1"; chrX rmsk exon 154855126 154857102 13869 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "2209"; repFamily "ERVL"; repLeft "-3505"; repStart "182"; chrX rmsk exon 154857107 154857856 7046 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "4033"; repFamily "ERVL"; repLeft "-1681"; repStart "3254"; chrX rmsk exon 154858148 154858469 7046 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "4353"; repFamily "ERVL"; repLeft "-1361"; repStart "4034"; chrX rmsk exon 154858470 154858749 2065 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "5302"; repFamily "ERVL"; repLeft "-412"; repStart "5023"; chrX rmsk exon 154858756 154858853 532 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5609"; chrX rmsk exon 154858854 154859161 1878 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "309"; repFamily "ERVL"; repLeft "-247"; repStart "1"; chrX rmsk exon 154859195 154859238 273 + . gene_id "ERVLB4_Xq28b"; transcript_id "ERVLB4_Xq28b"; locus "ERVLB4_Xq28b"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_1946"; repClass "LTR"; repEnd "556"; repFamily "ERVL"; repLeft "0"; repStart "513"; ### ERV316A3_Xq28j ### chrX rmsk gene 155004404 155006016 . + . gene_id "ERV316A3_Xq28j"; transcript_id "ERV316A3_Xq28j"; locus "ERV316A3_Xq28j"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2864"; model_cov "1263"; model_pct "24.2"; chrX rmsk exon 155004404 155004681 881 + . gene_id "ERV316A3_Xq28j"; transcript_id "ERV316A3_Xq28j"; locus "ERV316A3_Xq28j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2864"; repClass "LTR"; repEnd "4094"; repFamily "ERVL"; repLeft "-1132"; repStart "3803"; chrX rmsk exon 155004725 155005653 2364 + . gene_id "ERV316A3_Xq28j"; transcript_id "ERV316A3_Xq28j"; locus "ERV316A3_Xq28j"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2864"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4254"; chrX rmsk exon 155005657 155006016 1056 + . gene_id "ERV316A3_Xq28j"; transcript_id "ERV316A3_Xq28j"; locus "ERV316A3_Xq28j"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2864"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-35"; repStart "4"; ### ERV316A3_Xq28k ### chrX rmsk gene 155007160 155008123 . + . gene_id "ERV316A3_Xq28k"; transcript_id "ERV316A3_Xq28k"; locus "ERV316A3_Xq28k"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2865"; model_cov "594"; model_pct "11.4"; chrX rmsk exon 155007160 155007475 823 + . gene_id "ERV316A3_Xq28k"; transcript_id "ERV316A3_Xq28k"; locus "ERV316A3_Xq28k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2865"; repClass "LTR"; repEnd "4060"; repFamily "ERVL"; repLeft "-1166"; repStart "3741"; chrX rmsk exon 155007858 155008123 853 + . gene_id "ERV316A3_Xq28k"; transcript_id "ERV316A3_Xq28k"; locus "ERV316A3_Xq28k"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2865"; repClass "LTR"; repEnd "4326"; repFamily "ERVL"; repLeft "-900"; repStart "4051"; ### ERV316A3_Xq28l ### chrX rmsk gene 155145537 155146717 . - . gene_id "ERV316A3_Xq28l"; transcript_id "ERV316A3_Xq28l"; locus "ERV316A3_Xq28l"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2866"; model_cov "1039"; model_pct "19.9"; chrX rmsk exon 155145537 155145704 340 - . gene_id "ERV316A3_Xq28l"; transcript_id "ERV316A3_Xq28l"; locus "ERV316A3_Xq28l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2866"; repClass "LTR"; repEnd "3126"; repFamily "ERVL"; repLeft "2955"; repStart "-2100"; chrX rmsk exon 155145698 155146417 2034 - . gene_id "ERV316A3_Xq28l"; transcript_id "ERV316A3_Xq28l"; locus "ERV316A3_Xq28l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2866"; repClass "LTR"; repEnd "2972"; repFamily "ERVL"; repLeft "2233"; repStart "-2254"; chrX rmsk exon 155146592 155146717 445 - . gene_id "ERV316A3_Xq28l"; transcript_id "ERV316A3_Xq28l"; locus "ERV316A3_Xq28l"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2866"; repClass "LTR"; repEnd "795"; repFamily "ERVL"; repLeft "666"; repStart "-4431"; ### HERVL_Xq28b ### chrX rmsk gene 155389041 155392819 . - . gene_id "HERVL_Xq28b"; transcript_id "HERVL_Xq28b"; locus "HERVL_Xq28b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1417"; model_cov "3372"; model_pct "59.6"; chrX rmsk exon 155389041 155390985 15004 - . gene_id "HERVL_Xq28b"; transcript_id "HERVL_Xq28b"; locus "HERVL_Xq28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1417"; repClass "LTR"; repEnd "4922"; repFamily "ERVL"; repLeft "2969"; repStart "-732"; chrX rmsk exon 155390980 155392387 10854 - . gene_id "HERVL_Xq28b"; transcript_id "HERVL_Xq28b"; locus "HERVL_Xq28b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1417"; repClass "LTR"; repEnd "1420"; repFamily "ERVL"; repLeft "1"; repStart "-4234"; chrX rmsk exon 155392389 155392819 3091 - . gene_id "HERVL_Xq28b"; transcript_id "HERVL_Xq28b"; locus "HERVL_Xq28b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1417"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "1"; repStart "-7"; ### ERVLE_Xq28i ### chrX rmsk gene 155631979 155634583 . + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3781"; model_cov "1564"; model_pct "27.6"; chrX rmsk exon 155631979 155632219 2346 + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3781"; repClass "LTR"; repEnd "1233"; repFamily "ERVL"; repLeft "-4434"; repStart "984"; chrX rmsk exon 155632259 155632334 2346 + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3781"; repClass "LTR"; repEnd "1301"; repFamily "ERVL"; repLeft "-4366"; repStart "1234"; chrX rmsk exon 155632855 155633217 2346 + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3781"; repClass "LTR"; repEnd "1675"; repFamily "ERVL"; repLeft "-3992"; repStart "1302"; chrX rmsk exon 155633398 155633886 1902 + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3781"; repClass "LTR"; repEnd "2210"; repFamily "ERVL"; repLeft "-3457"; repStart "1709"; chrX rmsk exon 155634222 155634583 1326 + . gene_id "ERVLE_Xq28i"; transcript_id "ERVLE_Xq28i"; locus "ERVLE_Xq28i"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3781"; repClass "LTR"; repEnd "4581"; repFamily "ERVL"; repLeft "-1086"; repStart "4207"; ### ERVLE_Xq28j ### chrX rmsk gene 155635833 155636860 . + . gene_id "ERVLE_Xq28j"; transcript_id "ERVLE_Xq28j"; locus "ERVLE_Xq28j"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3782"; model_cov "891"; model_pct "15.7"; chrX rmsk exon 155635833 155635963 409 + . gene_id "ERVLE_Xq28j"; transcript_id "ERVLE_Xq28j"; locus "ERVLE_Xq28j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3782"; repClass "LTR"; repEnd "4581"; repFamily "ERVL"; repLeft "-1086"; repStart "4448"; chrX rmsk exon 155635979 155636434 1699 + . gene_id "ERVLE_Xq28j"; transcript_id "ERVLE_Xq28j"; locus "ERVLE_Xq28j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3782"; repClass "LTR"; repEnd "5155"; repFamily "ERVL"; repLeft "-512"; repStart "4682"; chrX rmsk exon 155636534 155636553 513 + . gene_id "ERVLE_Xq28j"; transcript_id "ERVLE_Xq28j"; locus "ERVLE_Xq28j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3782"; repClass "LTR"; repEnd "5307"; repFamily "ERVL"; repLeft "-360"; repStart "5289"; chrX rmsk exon 155636605 155636860 513 + . gene_id "ERVLE_Xq28j"; transcript_id "ERVLE_Xq28j"; locus "ERVLE_Xq28j"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3782"; repClass "LTR"; repEnd "5575"; repFamily "ERVL"; repLeft "-92"; repStart "5308"; ### HERVEA_Xq28 ### chrX rmsk gene 155968944 155977440 . - . gene_id "HERVEA_Xq28"; transcript_id "HERVEA_Xq28"; locus "HERVEA_Xq28"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0114"; model_cov "7846"; model_pct "100.0"; chrX rmsk exon 155968944 155969404 3607 - . gene_id "HERVEA_Xq28"; transcript_id "HERVEA_Xq28"; locus "HERVEA_Xq28"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0114"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 155969405 155977208 66505 - . gene_id "HERVEA_Xq28"; transcript_id "HERVEA_Xq28"; locus "HERVEA_Xq28"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0114"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrX rmsk exon 155977209 155977440 1759 - . gene_id "HERVEA_Xq28"; transcript_id "HERVEA_Xq28"; locus "HERVEA_Xq28"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0114"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "231"; repStart "0"; ### LTR19_Yp11.2a ### chrY rmsk gene 1443947 1447420 . + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0070"; model_cov "1567"; model_pct "28.1"; chrY rmsk exon 1443947 1444189 804 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "-140"; repStart "15"; chrY rmsk exon 1444549 1444716 807 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "169"; repFamily "ERV1"; repLeft "-5417"; repStart "1"; chrY rmsk exon 1444698 1445607 5305 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "945"; repFamily "ERV1"; repLeft "-4641"; repStart "21"; chrY rmsk exon 1446799 1447204 1583 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "5501"; repFamily "ERV1"; repLeft "-85"; repStart "5026"; chrY rmsk exon 1447248 1447290 295 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "-441"; repStart "3"; chrY rmsk exon 1447385 1447420 230 + . gene_id "LTR19_Yp11.2a"; transcript_id "LTR19_Yp11.2a"; locus "LTR19_Yp11.2a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0070"; repClass "LTR"; repEnd "-49"; repFamily "ERV1"; repLeft "-535"; repStart "-84"; ### HML6_Yp11.2 ### chrY rmsk gene 2885207 2887692 . - . gene_id "HML6_Yp11.2"; transcript_id "HML6_Yp11.2"; locus "HML6_Yp11.2"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0103"; model_cov "2015"; model_pct "28.0"; chrY rmsk exon 2885207 2887200 13473 - . gene_id "HML6_Yp11.2"; transcript_id "HML6_Yp11.2"; locus "HML6_Yp11.2"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0103"; repClass "LTR"; repEnd "2036"; repFamily "ERVK"; repLeft "21"; repStart "-5166"; chrY rmsk exon 2887201 2887397 1294 - . gene_id "HML6_Yp11.2"; transcript_id "HML6_Yp11.2"; locus "HML6_Yp11.2"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0103"; repClass "LTR"; repEnd "410"; repFamily "ERVK"; repLeft "211"; repStart "-22"; chrY rmsk exon 2887437 2887692 1580 - . gene_id "HML6_Yp11.2"; transcript_id "HML6_Yp11.2"; locus "HML6_Yp11.2"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0103"; repClass "LTR"; repEnd "260"; repFamily "ERVK"; repLeft "1"; repStart "-172"; ### HERV3_Yp11.2a ### chrY rmsk gene 3002437 3006431 . + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0084"; model_cov "3068"; model_pct "36.4"; chrY rmsk exon 3002437 3002992 2808 + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0084"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 3002993 3005218 12080 + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0084"; repClass "LTR"; repEnd "2302"; repFamily "ERV1"; repLeft "-6124"; repStart "2"; chrY rmsk exon 3005232 3005655 1819 + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0084"; repClass "LTR"; repEnd "3153"; repFamily "ERV1"; repLeft "-5273"; repStart "2729"; chrY rmsk exon 3005671 3006011 2271 + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0084"; repClass "LTR"; repEnd "5765"; repFamily "ERV1"; repLeft "-2661"; repStart "5421"; chrY rmsk exon 3006012 3006431 2311 + . gene_id "HERV3_Yp11.2a"; transcript_id "HERV3_Yp11.2a"; locus "HERV3_Yp11.2a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0084"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "170"; ### HERVL_Yp11.2a ### chrY rmsk gene 3137135 3137820 . + . gene_id "HERVL_Yp11.2a"; transcript_id "HERVL_Yp11.2a"; locus "HERVL_Yp11.2a"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1418"; model_cov "650"; model_pct "11.5"; chrY rmsk exon 3137135 3137761 4346 + . gene_id "HERVL_Yp11.2a"; transcript_id "HERVL_Yp11.2a"; locus "HERVL_Yp11.2a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1418"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5004"; chrY rmsk exon 3137762 3137820 429 + . gene_id "HERVL_Yp11.2a"; transcript_id "HERVL_Yp11.2a"; locus "HERVL_Yp11.2a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1418"; repClass "LTR"; repEnd "59"; repFamily "ERVL"; repLeft "-394"; repStart "1"; ### PABLA_Yp11.2 ### chrY rmsk gene 3184188 3188755 . - . gene_id "PABLA_Yp11.2"; transcript_id "PABLA_Yp11.2"; locus "PABLA_Yp11.2"; category "internal"; intModel "PABL_A-int"; locid "PABL_A-int_0170"; model_cov "4513"; model_pct "90.0"; chrY rmsk exon 3184188 3184487 1941 - . gene_id "PABLA_Yp11.2"; transcript_id "PABLA_Yp11.2"; locus "PABLA_Yp11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0170"; repClass "LTR"; repEnd "5013"; repFamily "ERV1"; repLeft "4707"; repStart "-2"; chrY rmsk exon 3184485 3187243 10164 - . gene_id "PABLA_Yp11.2"; transcript_id "PABLA_Yp11.2"; locus "PABLA_Yp11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0170"; repClass "LTR"; repEnd "2530"; repFamily "ERV1"; repLeft "-236"; repStart "-2485"; chrY rmsk exon 3187243 3187356 681 - . gene_id "PABLA_Yp11.2"; transcript_id "PABLA_Yp11.2"; locus "PABLA_Yp11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0170"; repClass "LTR"; repEnd "1083"; repFamily "ERV1"; repLeft "970"; repStart "-3932"; chrY rmsk exon 3187359 3188755 5262 - . gene_id "PABLA_Yp11.2"; transcript_id "PABLA_Yp11.2"; locus "PABLA_Yp11.2"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0170"; repClass "LTR"; repEnd "399"; repFamily "ERV1"; repLeft "-929"; repStart "-4616"; ### ERVLB4_Yp11.2a ### chrY rmsk gene 3203855 3208375 . - . gene_id "ERVLB4_Yp11.2a"; transcript_id "ERVLB4_Yp11.2a"; locus "ERVLB4_Yp11.2a"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1947"; model_cov "3485"; model_pct "61.0"; chrY rmsk exon 3203855 3204279 1673 - . gene_id "ERVLB4_Yp11.2a"; transcript_id "ERVLB4_Yp11.2a"; locus "ERVLB4_Yp11.2a"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1947"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrY rmsk exon 3204280 3204729 22475 - . gene_id "ERVLB4_Yp11.2a"; transcript_id "ERVLB4_Yp11.2a"; locus "ERVLB4_Yp11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1947"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5298"; repStart "0"; chrY rmsk exon 3205028 3208005 22475 - . gene_id "ERVLB4_Yp11.2a"; transcript_id "ERVLB4_Yp11.2a"; locus "ERVLB4_Yp11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1947"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "2266"; repStart "-417"; chrY rmsk exon 3208332 3208375 22475 - . gene_id "ERVLB4_Yp11.2a"; transcript_id "ERVLB4_Yp11.2a"; locus "ERVLB4_Yp11.2a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1947"; repClass "LTR"; repEnd "2265"; repFamily "ERVL"; repLeft "2227"; repStart "-3449"; ### ERVLB4_Yp11.2b ### chrY rmsk gene 3208737 3211113 . - . gene_id "ERVLB4_Yp11.2b"; transcript_id "ERVLB4_Yp11.2b"; locus "ERVLB4_Yp11.2b"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1948"; model_cov "2229"; model_pct "39.0"; chrY rmsk exon 3208737 3210864 22475 - . gene_id "ERVLB4_Yp11.2b"; transcript_id "ERVLB4_Yp11.2b"; locus "ERVLB4_Yp11.2b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1948"; repClass "LTR"; repEnd "2294"; repFamily "ERVL"; repLeft "65"; repStart "-3420"; chrY rmsk exon 3210874 3210937 267 - . gene_id "ERVLB4_Yp11.2b"; transcript_id "ERVLB4_Yp11.2b"; locus "ERVLB4_Yp11.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1948"; repClass "LTR"; repEnd "407"; repFamily "ERVL"; repLeft "348"; repStart "-7"; chrY rmsk exon 3210994 3211113 437 - . gene_id "ERVLB4_Yp11.2b"; transcript_id "ERVLB4_Yp11.2b"; locus "ERVLB4_Yp11.2b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1948"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "245"; repStart "-48"; ### HERV3_Yp11.2b ### chrY rmsk gene 3235117 3243471 . - . gene_id "HERV3_Yp11.2b"; transcript_id "HERV3_Yp11.2b"; locus "HERV3_Yp11.2b"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0085"; model_cov "7976"; model_pct "94.7"; chrY rmsk exon 3235117 3241061 38693 - . gene_id "HERV3_Yp11.2b"; transcript_id "HERV3_Yp11.2b"; locus "HERV3_Yp11.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0085"; repClass "LTR"; repEnd "7730"; repFamily "ERV1"; repLeft "1754"; repStart "-696"; chrY rmsk exon 3241062 3241169 765 - . gene_id "HERV3_Yp11.2b"; transcript_id "HERV3_Yp11.2b"; locus "HERV3_Yp11.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0085"; repClass "LTR"; repEnd "1861"; repFamily "ERV1"; repLeft "1754"; repStart "-6565"; chrY rmsk exon 3241145 3243052 11333 - . gene_id "HERV3_Yp11.2b"; transcript_id "HERV3_Yp11.2b"; locus "HERV3_Yp11.2b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0085"; repClass "LTR"; repEnd "1895"; repFamily "ERV1"; repLeft "2"; repStart "-6531"; chrY rmsk exon 3243053 3243471 1418 - . gene_id "HERV3_Yp11.2b"; transcript_id "HERV3_Yp11.2b"; locus "HERV3_Yp11.2b"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0085"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "214"; repStart "0"; ### LTR23_Yp11.2 ### chrY rmsk gene 3368250 3369511 . + . gene_id "LTR23_Yp11.2"; transcript_id "LTR23_Yp11.2"; locus "LTR23_Yp11.2"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0084"; model_cov "1389"; model_pct "27.1"; chrY rmsk exon 3368250 3369511 2669 + . gene_id "LTR23_Yp11.2"; transcript_id "LTR23_Yp11.2"; locus "LTR23_Yp11.2"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0084"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "-3925"; repStart "-191"; ### MER4B_Yp11.2a ### chrY rmsk gene 3399431 3401435 . - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0559"; model_cov "1171"; model_pct "17.3"; chrY rmsk exon 3399431 3399720 537 - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0559"; repClass "LTR"; repEnd "2507"; repFamily "ERV1"; repLeft "2295"; repStart "-4251"; chrY rmsk exon 3399717 3399850 828 - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0559"; repClass "LTR"; repEnd "1060"; repFamily "ERV1"; repLeft "924"; repStart "-5698"; chrY rmsk exon 3399876 3400493 3294 - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0559"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "225"; repStart "-5913"; chrY rmsk exon 3400619 3400821 1356 - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0559"; repClass "LTR"; repEnd "204"; repFamily "ERV1"; repLeft "1"; repStart "-6554"; chrY rmsk exon 3400822 3401435 3261 - . gene_id "MER4B_Yp11.2a"; transcript_id "MER4B_Yp11.2a"; locus "MER4B_Yp11.2a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0559"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "-287"; repStart "0"; ### HUERSP3_Yp11.2a ### chrY rmsk gene 3404863 3410928 . - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0236"; model_cov "4552"; model_pct "51.0"; chrY rmsk exon 3404863 3405390 2316 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "1"; repStart "-92"; chrY rmsk exon 3405391 3405655 1448 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chrY rmsk exon 3406151 3406275 505 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6862"; repStart "-1934"; chrY rmsk exon 3406287 3406920 3425 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6274"; repStart "-2007"; chrY rmsk exon 3406913 3407161 1412 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "5166"; repFamily "ERV1"; repLeft "4901"; repStart "-3753"; chrY rmsk exon 3407163 3407294 742 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "4539"; repStart "-4237"; chrY rmsk exon 3407288 3409654 9255 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "752"; repStart "-5635"; chrY rmsk exon 3409691 3410315 2841 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "-8285"; chrY rmsk exon 3410320 3410928 2649 - . gene_id "HUERSP3_Yp11.2a"; transcript_id "HUERSP3_Yp11.2a"; locus "HUERSP3_Yp11.2a"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0236"; repClass "LTR"; repEnd "662"; repFamily "ERV1"; repLeft "1"; repStart "-4"; ### ERVLB4_Yp11.2c ### chrY rmsk gene 3425845 3427374 . + . gene_id "ERVLB4_Yp11.2c"; transcript_id "ERVLB4_Yp11.2c"; locus "ERVLB4_Yp11.2c"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1949"; model_cov "1510"; model_pct "26.4"; chrY rmsk exon 3425845 3427374 7737 + . gene_id "ERVLB4_Yp11.2c"; transcript_id "ERVLB4_Yp11.2c"; locus "ERVLB4_Yp11.2c"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1949"; repClass "LTR"; repEnd "1891"; repFamily "ERVL"; repLeft "-3823"; repStart "381"; ### ERVLB4_Yp11.2d ### chrY rmsk gene 3456301 3458232 . - . gene_id "ERVLB4_Yp11.2d"; transcript_id "ERVLB4_Yp11.2d"; locus "ERVLB4_Yp11.2d"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1950"; model_cov "1501"; model_pct "26.3"; chrY rmsk exon 3456301 3456781 1954 - . gene_id "ERVLB4_Yp11.2d"; transcript_id "ERVLB4_Yp11.2d"; locus "ERVLB4_Yp11.2d"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1950"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "3"; repStart "-1"; chrY rmsk exon 3456784 3458232 7855 - . gene_id "ERVLB4_Yp11.2d"; transcript_id "ERVLB4_Yp11.2d"; locus "ERVLB4_Yp11.2d"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1950"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4213"; repStart "0"; ### ERVL_Yp11.2a ### chrY rmsk gene 3458235 3460951 . - . gene_id "ERVL_Yp11.2a"; transcript_id "ERVL_Yp11.2a"; locus "ERVL_Yp11.2a"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0511"; model_cov "1853"; model_pct "32.2"; chrY rmsk exon 3458235 3459783 7420 - . gene_id "ERVL_Yp11.2a"; transcript_id "ERVL_Yp11.2a"; locus "ERVL_Yp11.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0511"; repClass "LTR"; repEnd "1918"; repFamily "ERVL"; repLeft "385"; repStart "-3839"; chrY rmsk exon 3460114 3460432 1424 - . gene_id "ERVL_Yp11.2a"; transcript_id "ERVL_Yp11.2a"; locus "ERVL_Yp11.2a"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0511"; repClass "LTR"; repEnd "364"; repFamily "ERVL"; repLeft "44"; repStart "-5393"; chrY rmsk exon 3460433 3460951 1746 - . gene_id "ERVL_Yp11.2a"; transcript_id "ERVL_Yp11.2a"; locus "ERVL_Yp11.2a"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0511"; repClass "LTR"; repEnd "520"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVL_Yp11.2b ### chrY rmsk gene 3557916 3559383 . + . gene_id "ERVL_Yp11.2b"; transcript_id "ERVL_Yp11.2b"; locus "ERVL_Yp11.2b"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0512"; model_cov "989"; model_pct "17.2"; chrY rmsk exon 3557916 3558876 4797 + . gene_id "ERVL_Yp11.2b"; transcript_id "ERVL_Yp11.2b"; locus "ERVL_Yp11.2b"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0512"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "4768"; chrY rmsk exon 3558877 3559383 2296 + . gene_id "ERVL_Yp11.2b"; transcript_id "ERVL_Yp11.2b"; locus "ERVL_Yp11.2b"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0512"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "-8"; repStart "1"; ### MER4_Yp11.2a ### chrY rmsk gene 3609027 3611056 . + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0968"; model_cov "1970"; model_pct "29.9"; chrY rmsk exon 3609027 3609490 3055 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0968"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 3609494 3609810 2338 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0968"; repClass "LTR"; repEnd "349"; repFamily "ERV1"; repLeft "-6249"; repStart "1"; chrY rmsk exon 3609846 3610119 2338 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0968"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "-5938"; repStart "350"; chrY rmsk exon 3610107 3610501 1677 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0968"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "504"; chrY rmsk exon 3610495 3611004 3277 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0968"; repClass "LTR"; repEnd "2357"; repFamily "ERV1"; repLeft "-4241"; repStart "1809"; chrY rmsk exon 3611005 3611056 294 + . gene_id "MER4_Yp11.2a"; transcript_id "MER4_Yp11.2a"; locus "MER4_Yp11.2a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0968"; repClass "LTR"; repEnd "468"; repFamily "ERV1"; repLeft "-4"; repStart "416"; ### HERVFRD_Yp11.2a ### chrY rmsk gene 3631645 3636204 . + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0220"; model_cov "3311"; model_pct "46.0"; chrY rmsk exon 3631645 3632022 2364 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0220"; repClass "LTR"; repEnd "679"; repFamily "ERV1"; repLeft "-103"; repStart "303"; chrY rmsk exon 3632550 3632613 2364 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50C"; geneRegion "ltr"; locid "MER50-int_0220"; repClass "LTR"; repEnd "737"; repFamily "ERV1"; repLeft "-45"; repStart "680"; chrY rmsk exon 3632639 3632744 393 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0220"; repClass "LTR"; repEnd "125"; repFamily "ERV1"; repLeft "-7080"; repStart "18"; chrY rmsk exon 3632809 3634604 6182 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0220"; repClass "LTR"; repEnd "1843"; repFamily "ERV1"; repLeft "-5362"; repStart "97"; chrY rmsk exon 3634604 3635098 2783 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0220"; repClass "LTR"; repEnd "3784"; repFamily "ERV1"; repLeft "-3421"; repStart "3329"; chrY rmsk exon 3635396 3636204 3013 + . gene_id "HERVFRD_Yp11.2a"; transcript_id "HERVFRD_Yp11.2a"; locus "HERVFRD_Yp11.2a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0220"; repClass "LTR"; repEnd "6719"; repFamily "ERV1"; repLeft "-486"; repStart "5716"; ### ERVLB4_Yp11.2e ### chrY rmsk gene 3642324 3643406 . + . gene_id "ERVLB4_Yp11.2e"; transcript_id "ERVLB4_Yp11.2e"; locus "ERVLB4_Yp11.2e"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1951"; model_cov "1090"; model_pct "19.1"; chrY rmsk exon 3642324 3642424 515 + . gene_id "ERVLB4_Yp11.2e"; transcript_id "ERVLB4_Yp11.2e"; locus "ERVLB4_Yp11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1951"; repClass "LTR"; repEnd "3388"; repFamily "ERVL"; repLeft "-2326"; repStart "3287"; chrY rmsk exon 3642437 3643406 4957 + . gene_id "ERVLB4_Yp11.2e"; transcript_id "ERVLB4_Yp11.2e"; locus "ERVLB4_Yp11.2e"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1951"; repClass "LTR"; repEnd "4469"; repFamily "ERVL"; repLeft "-1245"; repStart "3480"; ### ERVLB4_Yp11.2f ### chrY rmsk gene 3650793 3651810 . + . gene_id "ERVLB4_Yp11.2f"; transcript_id "ERVLB4_Yp11.2f"; locus "ERVLB4_Yp11.2f"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1952"; model_cov "590"; model_pct "10.3"; chrY rmsk exon 3650793 3651366 2022 + . gene_id "ERVLB4_Yp11.2f"; transcript_id "ERVLB4_Yp11.2f"; locus "ERVLB4_Yp11.2f"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1952"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5124"; chrY rmsk exon 3651376 3651810 1757 + . gene_id "ERVLB4_Yp11.2f"; transcript_id "ERVLB4_Yp11.2f"; locus "ERVLB4_Yp11.2f"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1952"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "-2"; repStart "11"; ### MER41_Yp11.2a ### chrY rmsk gene 3747337 3748680 . - . gene_id "MER41_Yp11.2a"; transcript_id "MER41_Yp11.2a"; locus "MER41_Yp11.2a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0634"; model_cov "1363"; model_pct "22.9"; chrY rmsk exon 3747337 3748434 6642 - . gene_id "MER41_Yp11.2a"; transcript_id "MER41_Yp11.2a"; locus "MER41_Yp11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0634"; repClass "LTR"; repEnd "2185"; repFamily "ERV1"; repLeft "1079"; repStart "-3761"; chrY rmsk exon 3748421 3748680 1707 - . gene_id "MER41_Yp11.2a"; transcript_id "MER41_Yp11.2a"; locus "MER41_Yp11.2a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0634"; repClass "LTR"; repEnd "618"; repFamily "ERV1"; repLeft "361"; repStart "-5328"; ### ERVL_Yp11.2c ### chrY rmsk gene 3771321 3774878 . - . gene_id "ERVL_Yp11.2c"; transcript_id "ERVL_Yp11.2c"; locus "ERVL_Yp11.2c"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0513"; model_cov "1899"; model_pct "33.0"; chrY rmsk exon 3771321 3771904 3014 - . gene_id "ERVL_Yp11.2c"; transcript_id "ERVL_Yp11.2c"; locus "ERVL_Yp11.2c"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0513"; repClass "LTR"; repEnd "651"; repFamily "ERVL"; repLeft "1"; repStart "-66"; chrY rmsk exon 3771905 3772379 1368 - . gene_id "ERVL_Yp11.2c"; transcript_id "ERVL_Yp11.2c"; locus "ERVL_Yp11.2c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0513"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "5194"; repStart "0"; chrY rmsk exon 3773419 3774740 7825 - . gene_id "ERVL_Yp11.2c"; transcript_id "ERVL_Yp11.2c"; locus "ERVL_Yp11.2c"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0513"; repClass "LTR"; repEnd "5242"; repFamily "ERVL"; repLeft "3906"; repStart "-515"; chrY rmsk exon 3774742 3774878 677 - . gene_id "ERVL_Yp11.2c"; transcript_id "ERVL_Yp11.2c"; locus "ERVL_Yp11.2c"; repName "MLT2B5"; geneRegion "ltr"; locid "ERVL-int_0513"; repClass "LTR"; repEnd "161"; repFamily "ERVL"; repLeft "3"; repStart "-556"; ### LTR46_Yp11.2 ### chrY rmsk gene 3784727 3792809 . - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0029"; model_cov "6713"; model_pct "96.1"; chrY rmsk exon 3784727 3785180 2987 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 3785181 3785487 2136 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "6679"; repStart "0"; chrY rmsk exon 3785810 3788528 18012 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "6673"; repFamily "ERV1"; repLeft "3938"; repStart "-312"; chrY rmsk exon 3788525 3791628 18789 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "3790"; repFamily "ERV1"; repLeft "659"; repStart "-3195"; chrY rmsk exon 3791821 3792365 3579 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "1"; repStart "-6443"; chrY rmsk exon 3792366 3792809 2968 - . gene_id "LTR46_Yp11.2"; transcript_id "LTR46_Yp11.2"; locus "LTR46_Yp11.2"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0029"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Yp11.2b ### chrY rmsk gene 3850242 3853249 . - . gene_id "HERVFRD_Yp11.2b"; transcript_id "HERVFRD_Yp11.2b"; locus "HERVFRD_Yp11.2b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0222"; model_cov "1220"; model_pct "16.9"; chrY rmsk exon 3850242 3850977 3686 - . gene_id "HERVFRD_Yp11.2b"; transcript_id "HERVFRD_Yp11.2b"; locus "HERVFRD_Yp11.2b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0222"; repClass "LTR"; repEnd "713"; repFamily "ERV1"; repLeft "1"; repStart "-21"; chrY rmsk exon 3850978 3852121 6466 - . gene_id "HERVFRD_Yp11.2b"; transcript_id "HERVFRD_Yp11.2b"; locus "HERVFRD_Yp11.2b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0222"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6086"; repStart "-8"; chrY rmsk exon 3853139 3853249 288 - . gene_id "HERVFRD_Yp11.2b"; transcript_id "HERVFRD_Yp11.2b"; locus "HERVFRD_Yp11.2b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0222"; repClass "LTR"; repEnd "4716"; repFamily "ERV1"; repLeft "4607"; repStart "-2489"; ### HERVFRD_Yp11.2c ### chrY rmsk gene 3853449 3860124 . - . gene_id "HERVFRD_Yp11.2c"; transcript_id "HERVFRD_Yp11.2c"; locus "HERVFRD_Yp11.2c"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0223"; model_cov "5643"; model_pct "78.3"; chrY rmsk exon 3853449 3859760 18978 - . gene_id "HERVFRD_Yp11.2c"; transcript_id "HERVFRD_Yp11.2c"; locus "HERVFRD_Yp11.2c"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0223"; repClass "LTR"; repEnd "6310"; repFamily "ERV1"; repLeft "667"; repStart "-895"; chrY rmsk exon 3859763 3860124 1950 - . gene_id "HERVFRD_Yp11.2c"; transcript_id "HERVFRD_Yp11.2c"; locus "HERVFRD_Yp11.2c"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0223"; repClass "LTR"; repEnd "710"; repFamily "ERV1"; repLeft "357"; repStart "-24"; ### MER4_Yp11.2b ### chrY rmsk gene 3860183 3867414 . + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0970"; model_cov "4662"; model_pct "70.7"; chrY rmsk exon 3860183 3860260 481 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "604"; chrY rmsk exon 3860282 3860526 1444 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "993"; repFamily "ERV1"; repLeft "-5605"; repStart "764"; chrY rmsk exon 3860593 3861302 4110 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1761"; chrY rmsk exon 3861418 3862122 2946 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "3677"; repFamily "ERV1"; repLeft "-2921"; repStart "2840"; chrY rmsk exon 3862126 3864614 14804 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "6428"; repFamily "ERV1"; repLeft "-170"; repStart "3837"; chrY rmsk exon 3866765 3866952 1066 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0970"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6405"; chrY rmsk exon 3866964 3867414 2849 + . gene_id "MER4_Yp11.2b"; transcript_id "MER4_Yp11.2b"; locus "MER4_Yp11.2b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0970"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Yp11.2b ### chrY rmsk gene 3873293 3875648 . - . gene_id "MER4B_Yp11.2b"; transcript_id "MER4B_Yp11.2b"; locus "MER4B_Yp11.2b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0560"; model_cov "1722"; model_pct "25.5"; chrY rmsk exon 3873293 3873878 3433 - . gene_id "MER4B_Yp11.2b"; transcript_id "MER4B_Yp11.2b"; locus "MER4B_Yp11.2b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0560"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 3873879 3874146 1618 - . gene_id "MER4B_Yp11.2b"; transcript_id "MER4B_Yp11.2b"; locus "MER4B_Yp11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0560"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6491"; repStart "0"; chrY rmsk exon 3874139 3875648 6860 - . gene_id "MER4B_Yp11.2b"; transcript_id "MER4B_Yp11.2b"; locus "MER4B_Yp11.2b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0560"; repClass "LTR"; repEnd "6577"; repFamily "ERV1"; repLeft "5122"; repStart "-181"; ### MER4B_Yp11.2c ### chrY rmsk gene 3876393 3880951 . - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0561"; model_cov "3569"; model_pct "52.8"; chrY rmsk exon 3876393 3876828 1681 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "6750"; repFamily "ERV1"; repLeft "6462"; repStart "-8"; chrY rmsk exon 3876828 3876871 313 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "4084"; repFamily "ERV1"; repLeft "4041"; repStart "-2674"; chrY rmsk exon 3876883 3876977 625 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "3546"; repFamily "ERV1"; repLeft "3452"; repStart "-3212"; chrY rmsk exon 3876985 3877902 7205 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "3327"; repFamily "ERV1"; repLeft "2394"; repStart "-3431"; chrY rmsk exon 3878197 3878276 7205 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "2393"; repFamily "ERV1"; repLeft "2327"; repStart "-4365"; chrY rmsk exon 3878578 3879101 7205 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "2326"; repFamily "ERV1"; repLeft "1795"; repStart "-4432"; chrY rmsk exon 3879408 3880951 7205 - . gene_id "MER4B_Yp11.2c"; transcript_id "MER4B_Yp11.2c"; locus "MER4B_Yp11.2c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0561"; repClass "LTR"; repEnd "1794"; repFamily "ERV1"; repLeft "180"; repStart "-4964"; ### ERVLB4_Yp11.2g ### chrY rmsk gene 3954998 3958956 . - . gene_id "ERVLB4_Yp11.2g"; transcript_id "ERVLB4_Yp11.2g"; locus "ERVLB4_Yp11.2g"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1953"; model_cov "3245"; model_pct "56.8"; chrY rmsk exon 3954998 3955463 1446 - . gene_id "ERVLB4_Yp11.2g"; transcript_id "ERVLB4_Yp11.2g"; locus "ERVLB4_Yp11.2g"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1953"; repClass "LTR"; repEnd "469"; repFamily "ERVL"; repLeft "-31"; repStart "-51"; chrY rmsk exon 3955471 3958675 16768 - . gene_id "ERVLB4_Yp11.2g"; transcript_id "ERVLB4_Yp11.2g"; locus "ERVLB4_Yp11.2g"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1953"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "2465"; repStart "-4"; chrY rmsk exon 3958680 3958956 944 - . gene_id "ERVLB4_Yp11.2g"; transcript_id "ERVLB4_Yp11.2g"; locus "ERVLB4_Yp11.2g"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_1953"; repClass "LTR"; repEnd "267"; repFamily "ERVL"; repLeft "1"; repStart "-253"; ### ERVLE_Yp11.2a ### chrY rmsk gene 3976274 3977051 . - . gene_id "ERVLE_Yp11.2a"; transcript_id "ERVLE_Yp11.2a"; locus "ERVLE_Yp11.2a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3783"; model_cov "813"; model_pct "14.3"; chrY rmsk exon 3976274 3977051 2193 - . gene_id "ERVLE_Yp11.2a"; transcript_id "ERVLE_Yp11.2a"; locus "ERVLE_Yp11.2a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3783"; repClass "LTR"; repEnd "4126"; repFamily "ERVL"; repLeft "3313"; repStart "-1541"; ### MER4_Yp11.2c ### chrY rmsk gene 3997018 3999085 . - . gene_id "MER4_Yp11.2c"; transcript_id "MER4_Yp11.2c"; locus "MER4_Yp11.2c"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0971"; model_cov "1880"; model_pct "28.5"; chrY rmsk exon 3997018 3997241 1548 - . gene_id "MER4_Yp11.2c"; transcript_id "MER4_Yp11.2c"; locus "MER4_Yp11.2c"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0971"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "248"; repStart "0"; chrY rmsk exon 3997242 3999085 10069 - . gene_id "MER4_Yp11.2c"; transcript_id "MER4_Yp11.2c"; locus "MER4_Yp11.2c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0971"; repClass "LTR"; repEnd "5724"; repFamily "ERV1"; repLeft "3844"; repStart "-874"; ### MER4_Yp11.2d ### chrY rmsk gene 4005876 4009681 . - . gene_id "MER4_Yp11.2d"; transcript_id "MER4_Yp11.2d"; locus "MER4_Yp11.2d"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0972"; model_cov "3297"; model_pct "50.0"; chrY rmsk exon 4005876 4006254 1479 - . gene_id "MER4_Yp11.2d"; transcript_id "MER4_Yp11.2d"; locus "MER4_Yp11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0972"; repClass "LTR"; repEnd "3686"; repFamily "ERV1"; repLeft "3304"; repStart "-2912"; chrY rmsk exon 4006283 4006670 1704 - . gene_id "MER4_Yp11.2d"; transcript_id "MER4_Yp11.2d"; locus "MER4_Yp11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0972"; repClass "LTR"; repEnd "3150"; repFamily "ERV1"; repLeft "2737"; repStart "-3448"; chrY rmsk exon 4006893 4009228 11314 - . gene_id "MER4_Yp11.2d"; transcript_id "MER4_Yp11.2d"; locus "MER4_Yp11.2d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0972"; repClass "LTR"; repEnd "2503"; repFamily "ERV1"; repLeft "1"; repStart "-4095"; chrY rmsk exon 4009232 4009681 3192 - . gene_id "MER4_Yp11.2d"; transcript_id "MER4_Yp11.2d"; locus "MER4_Yp11.2d"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0972"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Yp11.2d ### chrY rmsk gene 4009683 4016459 . - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; category "prototype"; intModel "MER50-int"; locid "MER50-int_0224"; model_cov "5737"; model_pct "79.6"; chrY rmsk exon 4009683 4009962 1568 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0224"; repClass "LTR"; repEnd "288"; repFamily "ERV1"; repLeft "1"; repStart "-446"; chrY rmsk exon 4009963 4010174 1449 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "7197"; repFamily "ERV1"; repLeft "6989"; repStart "-8"; chrY rmsk exon 4010160 4011378 6918 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "7048"; repFamily "ERV1"; repLeft "5076"; repStart "-157"; chrY rmsk exon 4011369 4011436 330 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "4962"; repFamily "ERV1"; repLeft "4910"; repStart "-2243"; chrY rmsk exon 4011981 4013751 8057 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "4593"; repFamily "ERV1"; repLeft "2788"; repStart "-2612"; chrY rmsk exon 4013756 4013888 3849 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "1840"; repFamily "ERV1"; repLeft "1720"; repStart "-5365"; chrY rmsk exon 4014201 4014789 3849 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "1719"; repFamily "ERV1"; repLeft "1126"; repStart "-5486"; chrY rmsk exon 4014812 4015723 3075 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0224"; repClass "LTR"; repEnd "988"; repFamily "ERV1"; repLeft "1"; repStart "-6217"; chrY rmsk exon 4015724 4016459 3646 - . gene_id "HERVFRD_Yp11.2d"; transcript_id "HERVFRD_Yp11.2d"; locus "HERVFRD_Yp11.2d"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0224"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_Yp11.2h ### chrY rmsk gene 4056017 4058487 . - . gene_id "ERVLB4_Yp11.2h"; transcript_id "ERVLB4_Yp11.2h"; locus "ERVLB4_Yp11.2h"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1954"; model_cov "1984"; model_pct "34.7"; chrY rmsk exon 4056017 4057641 7477 - . gene_id "ERVLB4_Yp11.2h"; transcript_id "ERVLB4_Yp11.2h"; locus "ERVLB4_Yp11.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1954"; repClass "LTR"; repEnd "3570"; repFamily "ERVL"; repLeft "1881"; repStart "-2144"; chrY rmsk exon 4057684 4057797 573 - . gene_id "ERVLB4_Yp11.2h"; transcript_id "ERVLB4_Yp11.2h"; locus "ERVLB4_Yp11.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1954"; repClass "LTR"; repEnd "1132"; repFamily "ERVL"; repLeft "1017"; repStart "-4582"; chrY rmsk exon 4057969 4058151 548 - . gene_id "ERVLB4_Yp11.2h"; transcript_id "ERVLB4_Yp11.2h"; locus "ERVLB4_Yp11.2h"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1954"; repClass "LTR"; repEnd "998"; repFamily "ERVL"; repLeft "818"; repStart "-4716"; chrY rmsk exon 4058174 4058487 1271 - . gene_id "ERVLB4_Yp11.2h"; transcript_id "ERVLB4_Yp11.2h"; locus "ERVLB4_Yp11.2h"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1954"; repClass "LTR"; repEnd "341"; repFamily "ERVL"; repLeft "5"; repStart "-56"; ### ERVLB4_Yp11.2i ### chrY rmsk gene 4064594 4068257 . - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1955"; model_cov "2252"; model_pct "39.4"; chrY rmsk exon 4064594 4065086 1809 - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_1955"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "-39"; repStart "-6"; chrY rmsk exon 4065089 4066209 5962 - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1955"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "4604"; repStart "-2"; chrY rmsk exon 4066243 4066500 6043 - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1955"; repClass "LTR"; repEnd "4606"; repFamily "ERVL"; repLeft "4351"; repStart "-1108"; chrY rmsk exon 4066925 4067686 6043 - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1955"; repClass "LTR"; repEnd "4350"; repFamily "ERVL"; repLeft "3597"; repStart "-1364"; chrY rmsk exon 4068105 4068257 6043 - . gene_id "ERVLB4_Yp11.2i"; transcript_id "ERVLB4_Yp11.2i"; locus "ERVLB4_Yp11.2i"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1955"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "3460"; repStart "-2118"; ### MER4_Yp11.2e ### chrY rmsk gene 4100562 4102089 . + . gene_id "MER4_Yp11.2e"; transcript_id "MER4_Yp11.2e"; locus "MER4_Yp11.2e"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0973"; model_cov "1132"; model_pct "17.2"; chrY rmsk exon 4100562 4101050 2883 + . gene_id "MER4_Yp11.2e"; transcript_id "MER4_Yp11.2e"; locus "MER4_Yp11.2e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0973"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 4101054 4101604 2486 + . gene_id "MER4_Yp11.2e"; transcript_id "MER4_Yp11.2e"; locus "MER4_Yp11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0973"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "1"; chrY rmsk exon 4101572 4101679 413 + . gene_id "MER4_Yp11.2e"; transcript_id "MER4_Yp11.2e"; locus "MER4_Yp11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0973"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-7235"; repStart "-739"; chrY rmsk exon 4101771 4102089 1163 + . gene_id "MER4_Yp11.2e"; transcript_id "MER4_Yp11.2e"; locus "MER4_Yp11.2e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0973"; repClass "LTR"; repEnd "2471"; repFamily "ERV1"; repLeft "-4127"; repStart "2127"; ### MER4_Yp11.2f ### chrY rmsk gene 4102110 4108152 . + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0974"; model_cov "5408"; model_pct "82.0"; chrY rmsk exon 4102110 4103090 5096 + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0974"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "-5573"; repStart "29"; chrY rmsk exon 4103072 4103747 3679 + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0974"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chrY rmsk exon 4103965 4104844 3374 + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0974"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2759"; chrY rmsk exon 4104844 4107652 13225 + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0974"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "3837"; chrY rmsk exon 4107680 4108152 2966 + . gene_id "MER4_Yp11.2f"; transcript_id "MER4_Yp11.2f"; locus "MER4_Yp11.2f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0974"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER41_Yp11.2b ### chrY rmsk gene 4144396 4149335 . - . gene_id "MER41_Yp11.2b"; transcript_id "MER41_Yp11.2b"; locus "MER41_Yp11.2b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0635"; model_cov "5898"; model_pct "99.2"; chrY rmsk exon 4144396 4144712 2057 - . gene_id "MER41_Yp11.2b"; transcript_id "MER41_Yp11.2b"; locus "MER41_Yp11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0635"; repClass "LTR"; repEnd "5938"; repFamily "ERV1"; repLeft "5622"; repStart "-8"; chrY rmsk exon 4144710 4149335 19817 - . gene_id "MER41_Yp11.2b"; transcript_id "MER41_Yp11.2b"; locus "MER41_Yp11.2b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0635"; repClass "LTR"; repEnd "4769"; repFamily "ERV1"; repLeft "-813"; repStart "-1177"; ### HERVFRD_Yp11.2e ### chrY rmsk gene 4152667 4154650 . - . gene_id "HERVFRD_Yp11.2e"; transcript_id "HERVFRD_Yp11.2e"; locus "HERVFRD_Yp11.2e"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0225"; model_cov "888"; model_pct "12.3"; chrY rmsk exon 4152667 4152800 857 - . gene_id "HERVFRD_Yp11.2e"; transcript_id "HERVFRD_Yp11.2e"; locus "HERVFRD_Yp11.2e"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0225"; repClass "LTR"; repEnd "894"; repFamily "ERV1"; repLeft "763"; repStart "-6311"; chrY rmsk exon 4152852 4153606 4840 - . gene_id "HERVFRD_Yp11.2e"; transcript_id "HERVFRD_Yp11.2e"; locus "HERVFRD_Yp11.2e"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0225"; repClass "LTR"; repEnd "758"; repFamily "ERV1"; repLeft "1"; repStart "-6447"; chrY rmsk exon 4153607 4153872 3573 - . gene_id "HERVFRD_Yp11.2e"; transcript_id "HERVFRD_Yp11.2e"; locus "HERVFRD_Yp11.2e"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0225"; repClass "LTR"; repEnd "734"; repFamily "ERV1"; repLeft "477"; repStart "0"; chrY rmsk exon 4154182 4154650 3573 - . gene_id "HERVFRD_Yp11.2e"; transcript_id "HERVFRD_Yp11.2e"; locus "HERVFRD_Yp11.2e"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0225"; repClass "LTR"; repEnd "476"; repFamily "ERV1"; repLeft "1"; repStart "-258"; ### HERVL_Yp11.2b ### chrY rmsk gene 4208290 4214955 . + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1419"; model_cov "5576"; model_pct "98.6"; chrY rmsk exon 4208290 4208753 2946 + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1419"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "-3"; repStart "1"; chrY rmsk exon 4208758 4213414 40904 + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1419"; repClass "LTR"; repEnd "4713"; repFamily "ERVL"; repLeft "-941"; repStart "1"; chrY rmsk exon 4213449 4214301 40904 + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1419"; repClass "LTR"; repEnd "5578"; repFamily "ERVL"; repLeft "-76"; repStart "4714"; chrY rmsk exon 4214339 4214761 2830 + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1419"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "-40"; repStart "-110"; chrY rmsk exon 4214882 4214955 286 + . gene_id "HERVL_Yp11.2b"; transcript_id "HERVL_Yp11.2b"; locus "HERVL_Yp11.2b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1419"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "359"; ### HERVL_Yp11.2c ### chrY rmsk gene 4276231 4281875 . - . gene_id "HERVL_Yp11.2c"; transcript_id "HERVL_Yp11.2c"; locus "HERVL_Yp11.2c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1420"; model_cov "5124"; model_pct "90.6"; chrY rmsk exon 4276231 4276298 402 - . gene_id "HERVL_Yp11.2c"; transcript_id "HERVL_Yp11.2c"; locus "HERVL_Yp11.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1420"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "386"; repStart "0"; chrY rmsk exon 4276299 4281429 35152 - . gene_id "HERVL_Yp11.2c"; transcript_id "HERVL_Yp11.2c"; locus "HERVL_Yp11.2c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1420"; repClass "LTR"; repEnd "5125"; repFamily "ERVL"; repLeft "1"; repStart "-529"; chrY rmsk exon 4281430 4281875 3153 - . gene_id "HERVL_Yp11.2c"; transcript_id "HERVL_Yp11.2c"; locus "HERVL_Yp11.2c"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1420"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVH_Yp11.2a ### chrY rmsk gene 4355393 4361230 . - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1300"; model_cov "4901"; model_pct "63.5"; chrY rmsk exon 4355393 4355843 3302 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 4355844 4356219 2380 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7326"; repStart "0"; chrY rmsk exon 4356222 4356437 1333 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chrY rmsk exon 4356442 4357100 4277 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "4488"; repStart "-2567"; chrY rmsk exon 4357103 4357602 3236 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrY rmsk exon 4357593 4357740 840 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrY rmsk exon 4357735 4360780 16524 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrY rmsk exon 4360783 4361230 3264 - . gene_id "HERVH_Yp11.2a"; transcript_id "HERVH_Yp11.2a"; locus "HERVH_Yp11.2a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1300"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "3"; repStart "-2"; ### MER4_Yp11.2g ### chrY rmsk gene 4520258 4524770 . + . gene_id "MER4_Yp11.2g"; transcript_id "MER4_Yp11.2g"; locus "MER4_Yp11.2g"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0975"; model_cov "3516"; model_pct "53.3"; chrY rmsk exon 4520258 4520694 2373 + . gene_id "MER4_Yp11.2g"; transcript_id "MER4_Yp11.2g"; locus "MER4_Yp11.2g"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0975"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "-8"; repStart "1"; chrY rmsk exon 4520703 4523250 9320 + . gene_id "MER4_Yp11.2g"; transcript_id "MER4_Yp11.2g"; locus "MER4_Yp11.2g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0975"; repClass "LTR"; repEnd "2485"; repFamily "ERV1"; repLeft "-4113"; repStart "1"; chrY rmsk exon 4523247 4524241 5593 + . gene_id "MER4_Yp11.2g"; transcript_id "MER4_Yp11.2g"; locus "MER4_Yp11.2g"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0975"; repClass "LTR"; repEnd "6548"; repFamily "ERV1"; repLeft "-50"; repStart "5516"; chrY rmsk exon 4524320 4524770 2894 + . gene_id "MER4_Yp11.2g"; transcript_id "MER4_Yp11.2g"; locus "MER4_Yp11.2g"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0975"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4B_Yp11.2d ### chrY rmsk gene 4576017 4580506 . + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0562"; model_cov "2688"; model_pct "39.8"; chrY rmsk exon 4576017 4576604 2688 + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0562"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "-155"; chrY rmsk exon 4576605 4577250 5758 + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0562"; repClass "LTR"; repEnd "649"; repFamily "ERV1"; repLeft "-6109"; repStart "1"; chrY rmsk exon 4578538 4578982 5758 + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0562"; repClass "LTR"; repEnd "1152"; repFamily "ERV1"; repLeft "-5606"; repStart "650"; chrY rmsk exon 4579032 4579509 3185 + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0562"; repClass "LTR"; repEnd "2422"; repFamily "ERV1"; repLeft "-4336"; repStart "1908"; chrY rmsk exon 4579864 4580506 3185 + . gene_id "MER4B_Yp11.2d"; transcript_id "MER4B_Yp11.2d"; locus "MER4B_Yp11.2d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0562"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4116"; repStart "1618"; ### MER4_Yp11.2h ### chrY rmsk gene 4580507 4581726 . - . gene_id "MER4_Yp11.2h"; transcript_id "MER4_Yp11.2h"; locus "MER4_Yp11.2h"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0976"; model_cov "773"; model_pct "11.7"; chrY rmsk exon 4580507 4580975 3361 - . gene_id "MER4_Yp11.2h"; transcript_id "MER4_Yp11.2h"; locus "MER4_Yp11.2h"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0976"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 4580977 4581726 4357 - . gene_id "MER4_Yp11.2h"; transcript_id "MER4_Yp11.2h"; locus "MER4_Yp11.2h"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0976"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5825"; repStart "0"; ### MER4B_Yp11.2e ### chrY rmsk gene 4880604 4882829 . + . gene_id "MER4B_Yp11.2e"; transcript_id "MER4B_Yp11.2e"; locus "MER4B_Yp11.2e"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0563"; model_cov "1722"; model_pct "25.5"; chrY rmsk exon 4880604 4881886 7544 + . gene_id "MER4B_Yp11.2e"; transcript_id "MER4B_Yp11.2e"; locus "MER4B_Yp11.2e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0563"; repClass "LTR"; repEnd "6319"; repFamily "ERV1"; repLeft "-439"; repStart "4974"; chrY rmsk exon 4881911 4882285 2437 + . gene_id "MER4B_Yp11.2e"; transcript_id "MER4B_Yp11.2e"; locus "MER4B_Yp11.2e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0563"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6381"; chrY rmsk exon 4882286 4882829 2543 + . gene_id "MER4B_Yp11.2e"; transcript_id "MER4B_Yp11.2e"; locus "MER4B_Yp11.2e"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0563"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "-46"; repStart "1"; ### HERVL_Yp11.2d ### chrY rmsk gene 5121128 5122698 . - . gene_id "HERVL_Yp11.2d"; transcript_id "HERVL_Yp11.2d"; locus "HERVL_Yp11.2d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1422"; model_cov "1109"; model_pct "19.6"; chrY rmsk exon 5121128 5121631 2206 - . gene_id "HERVL_Yp11.2d"; transcript_id "HERVL_Yp11.2d"; locus "HERVL_Yp11.2d"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1422"; repClass "LTR"; repEnd "445"; repFamily "ERVL"; repLeft "-96"; repStart "-8"; chrY rmsk exon 5121636 5122698 7340 - . gene_id "HERVL_Yp11.2d"; transcript_id "HERVL_Yp11.2d"; locus "HERVL_Yp11.2d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1422"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4545"; repStart "0"; ### HERVH_Yp11.2b ### chrY rmsk gene 5324787 5330427 . - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1301"; model_cov "4911"; model_pct "63.7"; chrY rmsk exon 5324787 5325235 3257 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 5325236 5325608 2392 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chrY rmsk exon 5325607 5325828 1394 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5597"; repStart "-1894"; chrY rmsk exon 5325826 5326482 4167 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chrY rmsk exon 5326485 5326987 3322 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chrY rmsk exon 5326978 5327125 869 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chrY rmsk exon 5327120 5329975 15232 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chrY rmsk exon 5329978 5330427 3428 - . gene_id "HERVH_Yp11.2b"; transcript_id "HERVH_Yp11.2b"; locus "HERVH_Yp11.2b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1301"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERV4_Yp11.2 ### chrY rmsk gene 5808988 5810636 . - . gene_id "HERV4_Yp11.2"; transcript_id "HERV4_Yp11.2"; locus "HERV4_Yp11.2"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0153"; model_cov "1414"; model_pct "21.6"; chrY rmsk exon 5808988 5810375 1198 - . gene_id "HERV4_Yp11.2"; transcript_id "HERV4_Yp11.2"; locus "HERV4_Yp11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0153"; repClass "LTR"; repEnd "5644"; repFamily "ERV1"; repLeft "4388"; repStart "-895"; chrY rmsk exon 5810481 5810636 276 - . gene_id "HERV4_Yp11.2"; transcript_id "HERV4_Yp11.2"; locus "HERV4_Yp11.2"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0153"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "2101"; repStart "-4280"; ### HERVL_Yp11.2e ### chrY rmsk gene 5844038 5850550 . + . gene_id "HERVL_Yp11.2e"; transcript_id "HERVL_Yp11.2e"; locus "HERVL_Yp11.2e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1424"; model_cov "5652"; model_pct "100.0"; chrY rmsk exon 5844038 5844489 3333 + . gene_id "HERVL_Yp11.2e"; transcript_id "HERVL_Yp11.2e"; locus "HERVL_Yp11.2e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1424"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrY rmsk exon 5844491 5850099 41522 + . gene_id "HERVL_Yp11.2e"; transcript_id "HERVL_Yp11.2e"; locus "HERVL_Yp11.2e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1424"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2"; chrY rmsk exon 5850100 5850550 3300 + . gene_id "HERVL_Yp11.2e"; transcript_id "HERVL_Yp11.2e"; locus "HERVL_Yp11.2e"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1424"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVH_Yp11.2c ### chrY rmsk gene 5941111 5946036 . + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1302"; model_cov "3903"; model_pct "50.6"; chrY rmsk exon 5941111 5941560 3458 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 5941563 5944586 20419 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrY rmsk exon 5944581 5944727 839 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrY rmsk exon 5944718 5944931 1340 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "3704"; repFamily "ERV1"; repLeft "-4009"; repStart "3492"; chrY rmsk exon 5945019 5945251 1350 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5587"; chrY rmsk exon 5945275 5945586 2055 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7390"; chrY rmsk exon 5945587 5946036 3326 + . gene_id "HERVH_Yp11.2c"; transcript_id "HERVH_Yp11.2c"; locus "HERVH_Yp11.2c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1302"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_Yp11.2d ### chrY rmsk gene 6139215 6144893 . + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1303"; model_cov "4888"; model_pct "63.4"; chrY rmsk exon 6139215 6139624 2653 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 6139627 6142590 19696 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chrY rmsk exon 6142585 6142731 808 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrY rmsk exon 6142731 6143224 3400 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chrY rmsk exon 6143227 6143890 4316 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrY rmsk exon 6143906 6144109 1340 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5612"; chrY rmsk exon 6144108 6144484 2312 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chrY rmsk exon 6144485 6144893 2628 + . gene_id "HERVH_Yp11.2d"; transcript_id "HERVH_Yp11.2d"; locus "HERVH_Yp11.2d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1303"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVE_Yp11.2a ### chrY rmsk gene 6385520 6389973 . + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0167"; model_cov "4349"; model_pct "55.7"; chrY rmsk exon 6385520 6387827 9937 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "4094"; repFamily "ERV1"; repLeft "-3719"; repStart "1684"; chrY rmsk exon 6387827 6389319 3869 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "5999"; repFamily "ERV1"; repLeft "-1814"; repStart "4386"; chrY rmsk exon 6389321 6389450 616 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "6506"; repFamily "ERV1"; repLeft "-1307"; repStart "6372"; chrY rmsk exon 6389446 6389612 778 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "7620"; chrY rmsk exon 6389613 6389786 252 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "-288"; repStart "39"; chrY rmsk exon 6389787 6389973 1155 + . gene_id "HERVE_Yp11.2a"; transcript_id "HERVE_Yp11.2a"; locus "HERVE_Yp11.2a"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0167"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; ### MER61_Yp11.2a ### chrY rmsk gene 6600213 6605981 . - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0431"; model_cov "4393"; model_pct "84.2"; chrY rmsk exon 6600213 6600542 1887 - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0431"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 6600858 6603180 23889 - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0431"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "2848"; repStart "-11"; chrY rmsk exon 6603922 6605089 23889 - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0431"; repClass "LTR"; repEnd "2579"; repFamily "ERV1"; repLeft "1320"; repStart "-2638"; chrY rmsk exon 6605083 6605687 1321 - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0431"; repClass "LTR"; repEnd "777"; repFamily "ERV1"; repLeft "1"; repStart "-4440"; chrY rmsk exon 6605688 6605981 1369 - . gene_id "MER61_Yp11.2a"; transcript_id "MER61_Yp11.2a"; locus "MER61_Yp11.2a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0431"; repClass "LTR"; repEnd "341"; repFamily "ERV1"; repLeft "7"; repStart "0"; ### ERVLE_Yp11.2b ### chrY rmsk gene 6673957 6676885 . - . gene_id "ERVLE_Yp11.2b"; transcript_id "ERVLE_Yp11.2b"; locus "ERVLE_Yp11.2b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3785"; model_cov "2957"; model_pct "52.2"; chrY rmsk exon 6673957 6676885 11487 - . gene_id "ERVLE_Yp11.2b"; transcript_id "ERVLE_Yp11.2b"; locus "ERVLE_Yp11.2b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3785"; repClass "LTR"; repEnd "5665"; repFamily "ERVL"; repLeft "2708"; repStart "-2"; ### ERVLB4_Yp11.2j ### chrY rmsk gene 6691108 6692661 . - . gene_id "ERVLB4_Yp11.2j"; transcript_id "ERVLB4_Yp11.2j"; locus "ERVLB4_Yp11.2j"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1956"; model_cov "1512"; model_pct "26.5"; chrY rmsk exon 6691108 6691862 4163 - . gene_id "ERVLB4_Yp11.2j"; transcript_id "ERVLB4_Yp11.2j"; locus "ERVLB4_Yp11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1956"; repClass "LTR"; repEnd "4266"; repFamily "ERVL"; repLeft "3511"; repStart "-1448"; chrY rmsk exon 6691935 6692661 3921 - . gene_id "ERVLB4_Yp11.2j"; transcript_id "ERVLB4_Yp11.2j"; locus "ERVLB4_Yp11.2j"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1956"; repClass "LTR"; repEnd "3527"; repFamily "ERVL"; repLeft "2770"; repStart "-2187"; ### ERVLE_Yp11.2c ### chrY rmsk gene 6719538 6721162 . + . gene_id "ERVLE_Yp11.2c"; transcript_id "ERVLE_Yp11.2c"; locus "ERVLE_Yp11.2c"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3786"; model_cov "1476"; model_pct "26.0"; chrY rmsk exon 6719538 6720310 1727 + . gene_id "ERVLE_Yp11.2c"; transcript_id "ERVLE_Yp11.2c"; locus "ERVLE_Yp11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3786"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "-1338"; repStart "3539"; chrY rmsk exon 6720485 6721162 1470 + . gene_id "ERVLE_Yp11.2c"; transcript_id "ERVLE_Yp11.2c"; locus "ERVLE_Yp11.2c"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3786"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "-403"; repStart "4578"; ### HERVIP10FH_Yp11.2a ### chrY rmsk gene 6782164 6786576 . + . gene_id "HERVIP10FH_Yp11.2a"; transcript_id "HERVIP10FH_Yp11.2a"; locus "HERVIP10FH_Yp11.2a"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0219"; model_cov "3502"; model_pct "68.6"; chrY rmsk exon 6782164 6782839 2211 + . gene_id "HERVIP10FH_Yp11.2a"; transcript_id "HERVIP10FH_Yp11.2a"; locus "HERVIP10FH_Yp11.2a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0219"; repClass "LTR"; repEnd "857"; repFamily "ERV1"; repLeft "-4245"; repStart "91"; chrY rmsk exon 6783318 6785816 5006 + . gene_id "HERVIP10FH_Yp11.2a"; transcript_id "HERVIP10FH_Yp11.2a"; locus "HERVIP10FH_Yp11.2a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0219"; repClass "LTR"; repEnd "4513"; repFamily "ERV1"; repLeft "-589"; repStart "2041"; chrY rmsk exon 6785802 6786058 412 + . gene_id "HERVIP10FH_Yp11.2a"; transcript_id "HERVIP10FH_Yp11.2a"; locus "HERVIP10FH_Yp11.2a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0219"; repClass "LTR"; repEnd "5100"; repFamily "ERV1"; repLeft "-2"; repStart "4836"; chrY rmsk exon 6786062 6786576 3505 + . gene_id "HERVIP10FH_Yp11.2a"; transcript_id "HERVIP10FH_Yp11.2a"; locus "HERVIP10FH_Yp11.2a"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0219"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVS71_Yp11.2a ### chrY rmsk gene 6890827 6895586 . + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0053"; model_cov "3979"; model_pct "44.3"; chrY rmsk exon 6890827 6891072 1722 + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0053"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "-6040"; repStart "2692"; chrY rmsk exon 6891070 6891095 21281 + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0053"; repClass "LTR"; repEnd "5199"; repFamily "ERV1"; repLeft "-3779"; repStart "5174"; chrY rmsk exon 6891580 6892597 21281 + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0053"; repClass "LTR"; repEnd "6248"; repFamily "ERV1"; repLeft "-2730"; repStart "5200"; chrY rmsk exon 6892662 6895240 21281 + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0053"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "6249"; chrY rmsk exon 6895241 6895586 2186 + . gene_id "HERVS71_Yp11.2a"; transcript_id "HERVS71_Yp11.2a"; locus "HERVS71_Yp11.2a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0053"; repClass "LTR"; repEnd "316"; repFamily "ERV1"; repLeft "-248"; repStart "1"; ### HERVL_Yp11.2f ### chrY rmsk gene 6901608 6905429 . - . gene_id "HERVL_Yp11.2f"; transcript_id "HERVL_Yp11.2f"; locus "HERVL_Yp11.2f"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1425"; model_cov "2899"; model_pct "51.3"; chrY rmsk exon 6901608 6902010 2754 - . gene_id "HERVL_Yp11.2f"; transcript_id "HERVL_Yp11.2f"; locus "HERVL_Yp11.2f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1425"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrY rmsk exon 6902011 6902558 21803 - . gene_id "HERVL_Yp11.2f"; transcript_id "HERVL_Yp11.2f"; locus "HERVL_Yp11.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1425"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5081"; repStart "0"; chrY rmsk exon 6903102 6905429 21803 - . gene_id "HERVL_Yp11.2f"; transcript_id "HERVL_Yp11.2f"; locus "HERVL_Yp11.2f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1425"; repClass "LTR"; repEnd "5080"; repFamily "ERVL"; repLeft "2754"; repStart "-574"; ### HERVIP10F_Yp11.2a ### chrY rmsk gene 6955997 6958398 . + . gene_id "HERVIP10F_Yp11.2a"; transcript_id "HERVIP10F_Yp11.2a"; locus "HERVIP10F_Yp11.2a"; category "internal"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0127"; model_cov "2398"; model_pct "31.0"; chrY rmsk exon 6955997 6958398 11690 + . gene_id "HERVIP10F_Yp11.2a"; transcript_id "HERVIP10F_Yp11.2a"; locus "HERVIP10F_Yp11.2a"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0127"; repClass "LTR"; repEnd "7734"; repFamily "ERV1"; repLeft "-3"; repStart "5336"; ### HML2_Yp11.2 ### chrY rmsk gene 6958400 6965343 . - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0129"; model_cov "5908"; model_pct "78.4"; chrY rmsk exon 6958400 6959413 7973 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 6959419 6963041 24065 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "7531"; repFamily "ERVK"; repLeft "3912"; repStart "-5"; chrY rmsk exon 6963034 6965343 11787 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "2820"; repFamily "ERVK"; repLeft "531"; repStart "-4716"; ### HERVIP10FH_Yp11.2b ### chrY rmsk gene 7056769 7063743 . - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0221"; model_cov "5839"; model_pct "100.0"; chrY rmsk exon 7056769 7057339 2976 - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0221"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrY rmsk exon 7057341 7061091 30988 - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0221"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "1332"; repStart "0"; chrY rmsk exon 7061118 7061684 30988 - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0221"; repClass "LTR"; repEnd "1331"; repFamily "ERV1"; repLeft "686"; repStart "-3771"; chrY rmsk exon 7061661 7063186 10049 - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0221"; repClass "LTR"; repEnd "-1210"; repFamily "ERV1"; repLeft "-2634"; repStart "-6312"; chrY rmsk exon 7063187 7063743 3378 - . gene_id "HERVIP10FH_Yp11.2b"; transcript_id "HERVIP10FH_Yp11.2b"; locus "HERVIP10FH_Yp11.2b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0221"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVIP10FH_Yp11.2c ### chrY rmsk gene 7107675 7110614 . + . gene_id "HERVIP10FH_Yp11.2c"; transcript_id "HERVIP10FH_Yp11.2c"; locus "HERVIP10FH_Yp11.2c"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0222"; model_cov "2434"; model_pct "47.7"; chrY rmsk exon 7107675 7110082 18507 + . gene_id "HERVIP10FH_Yp11.2c"; transcript_id "HERVIP10FH_Yp11.2c"; locus "HERVIP10FH_Yp11.2c"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0222"; repClass "LTR"; repEnd "5102"; repFamily "ERV1"; repLeft "0"; repStart "2668"; chrY rmsk exon 7110083 7110614 3353 + . gene_id "HERVIP10FH_Yp11.2c"; transcript_id "HERVIP10FH_Yp11.2c"; locus "HERVIP10FH_Yp11.2c"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0222"; repClass "LTR"; repEnd "511"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_Yp11.2a ### chrY rmsk gene 7169768 7177777 . + . gene_id "HERV9_Yp11.2a"; transcript_id "HERV9_Yp11.2a"; locus "HERV9_Yp11.2a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0195"; model_cov "7082"; model_pct "83.9"; chrY rmsk exon 7169768 7170351 3524 + . gene_id "HERV9_Yp11.2a"; transcript_id "HERV9_Yp11.2a"; locus "HERV9_Yp11.2a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0195"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 7170372 7175792 33660 + . gene_id "HERV9_Yp11.2a"; transcript_id "HERV9_Yp11.2a"; locus "HERV9_Yp11.2a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0195"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "-2850"; repStart "29"; chrY rmsk exon 7175791 7177265 7090 + . gene_id "HERV9_Yp11.2a"; transcript_id "HERV9_Yp11.2a"; locus "HERV9_Yp11.2a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0195"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6911"; chrY rmsk exon 7177266 7177777 3458 + . gene_id "HERV9_Yp11.2a"; transcript_id "HERV9_Yp11.2a"; locus "HERV9_Yp11.2a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0195"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_Yp11.2b ### chrY rmsk gene 7177778 7181020 . - . gene_id "HERVIP10F_Yp11.2b"; transcript_id "HERVIP10F_Yp11.2b"; locus "HERVIP10F_Yp11.2b"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0128"; model_cov "1585"; model_pct "20.5"; chrY rmsk exon 7177778 7177980 888 - . gene_id "HERVIP10F_Yp11.2b"; transcript_id "HERVIP10F_Yp11.2b"; locus "HERVIP10F_Yp11.2b"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0128"; repClass "LTR"; repEnd "211"; repFamily "ERV1"; repLeft "1"; repStart "-312"; chrY rmsk exon 7177982 7179864 6306 - . gene_id "HERVIP10F_Yp11.2b"; transcript_id "HERVIP10F_Yp11.2b"; locus "HERVIP10F_Yp11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0128"; repClass "LTR"; repEnd "7735"; repFamily "ERV1"; repLeft "6365"; repStart "-2"; chrY rmsk exon 7180824 7181020 4741 - . gene_id "HERVIP10F_Yp11.2b"; transcript_id "HERVIP10F_Yp11.2b"; locus "HERVIP10F_Yp11.2b"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0128"; repClass "LTR"; repEnd "3659"; repFamily "ERV1"; repLeft "3444"; repStart "-4078"; ### HERV3_Yp11.2c ### chrY rmsk gene 7196962 7204420 . + . gene_id "HERV3_Yp11.2c"; transcript_id "HERV3_Yp11.2c"; locus "HERV3_Yp11.2c"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0086"; model_cov "7769"; model_pct "92.2"; chrY rmsk exon 7196962 7204420 23680 + . gene_id "HERV3_Yp11.2c"; transcript_id "HERV3_Yp11.2c"; locus "HERV3_Yp11.2c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0086"; repClass "LTR"; repEnd "8425"; repFamily "ERV1"; repLeft "-1"; repStart "656"; ### HERV9_Yp11.2b ### chrY rmsk gene 7385492 7390151 . - . gene_id "HERV9_Yp11.2b"; transcript_id "HERV9_Yp11.2b"; locus "HERV9_Yp11.2b"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0196"; model_cov "3980"; model_pct "47.2"; chrY rmsk exon 7385492 7389329 23611 - . gene_id "HERV9_Yp11.2b"; transcript_id "HERV9_Yp11.2b"; locus "HERV9_Yp11.2b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0196"; repClass "LTR"; repEnd "3981"; repFamily "ERV1"; repLeft "1"; repStart "-4455"; chrY rmsk exon 7389330 7390151 4844 - . gene_id "HERV9_Yp11.2b"; transcript_id "HERV9_Yp11.2b"; locus "HERV9_Yp11.2b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0196"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_Yp11.2e ### chrY rmsk gene 7500590 7507138 . + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1304"; model_cov "5364"; model_pct "69.5"; chrY rmsk exon 7500590 7501024 3447 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 7501025 7505195 14892 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "4132"; repFamily "ERV1"; repLeft "-3581"; repStart "1"; chrY rmsk exon 7505493 7505915 14892 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "4550"; repFamily "ERV1"; repLeft "-3163"; repStart "4133"; chrY rmsk exon 7505907 7506162 1458 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "-1697"; repStart "5756"; chrY rmsk exon 7506156 7506712 3869 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7157"; chrY rmsk exon 7506713 7507138 3278 + . gene_id "HERVH_Yp11.2e"; transcript_id "HERVH_Yp11.2e"; locus "HERVH_Yp11.2e"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1304"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR19_Yp11.2b ### chrY rmsk gene 7601805 7606974 . - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0072"; model_cov "2020"; model_pct "36.2"; chrY rmsk exon 7601805 7602158 1952 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "366"; repFamily "ERV1"; repLeft "1"; repStart "-214"; chrY rmsk exon 7602685 7602923 1420 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "5254"; repFamily "ERV1"; repLeft "4986"; repStart "-332"; chrY rmsk exon 7605001 7605825 4545 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "1962"; repFamily "ERV1"; repLeft "1129"; repStart "-3624"; chrY rmsk exon 7605812 7606333 3790 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "921"; repFamily "ERV1"; repLeft "331"; repStart "-4665"; chrY rmsk exon 7606377 7606690 3790 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "330"; repFamily "ERV1"; repLeft "1"; repStart "-5256"; chrY rmsk exon 7606691 7606974 1644 - . gene_id "LTR19_Yp11.2b"; transcript_id "LTR19_Yp11.2b"; locus "LTR19_Yp11.2b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0072"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "296"; repStart "0"; ### LTR25_Yp11.2a ### chrY rmsk gene 7602924 7604412 . - . gene_id "LTR25_Yp11.2a"; transcript_id "LTR25_Yp11.2a"; locus "LTR25_Yp11.2a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0161"; model_cov "1490"; model_pct "20.7"; chrY rmsk exon 7602924 7604195 5109 - . gene_id "LTR25_Yp11.2a"; transcript_id "LTR25_Yp11.2a"; locus "LTR25_Yp11.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0161"; repClass "LTR"; repEnd "6629"; repFamily "ERV1"; repLeft "5354"; repStart "-559"; chrY rmsk exon 7604194 7604412 717 - . gene_id "LTR25_Yp11.2a"; transcript_id "LTR25_Yp11.2a"; locus "LTR25_Yp11.2a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0161"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "4681"; repStart "-2292"; ### HML5_Yp11.2a ### chrY rmsk gene 7618700 7628211 . - . gene_id "HML5_Yp11.2a"; transcript_id "HML5_Yp11.2a"; locus "HML5_Yp11.2a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0144"; model_cov "6792"; model_pct "99.3"; chrY rmsk exon 7618700 7619267 4069 - . gene_id "HML5_Yp11.2a"; transcript_id "HML5_Yp11.2a"; locus "HML5_Yp11.2a"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0144"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 7619269 7621229 22390 - . gene_id "HML5_Yp11.2a"; transcript_id "HML5_Yp11.2a"; locus "HML5_Yp11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0144"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "4774"; repStart "-2"; chrY rmsk exon 7622782 7625336 22390 - . gene_id "HML5_Yp11.2a"; transcript_id "HML5_Yp11.2a"; locus "HML5_Yp11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0144"; repClass "LTR"; repEnd "4773"; repFamily "ERVK"; repLeft "2267"; repStart "-2064"; chrY rmsk exon 7625977 7628211 12840 - . gene_id "HML5_Yp11.2a"; transcript_id "HML5_Yp11.2a"; locus "HML5_Yp11.2a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0144"; repClass "LTR"; repEnd "2271"; repFamily "ERVK"; repLeft "46"; repStart "-4566"; ### HERVS71_Yp11.2b ### chrY rmsk gene 7830919 7841079 . + . gene_id "HERVS71_Yp11.2b"; transcript_id "HERVS71_Yp11.2b"; locus "HERVS71_Yp11.2b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0055"; model_cov "8909"; model_pct "99.2"; chrY rmsk exon 7830919 7831568 1770 + . gene_id "HERVS71_Yp11.2b"; transcript_id "HERVS71_Yp11.2b"; locus "HERVS71_Yp11.2b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0055"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 7831569 7840429 38305 + . gene_id "HERVS71_Yp11.2b"; transcript_id "HERVS71_Yp11.2b"; locus "HERVS71_Yp11.2b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0055"; repClass "LTR"; repEnd "8910"; repFamily "ERV1"; repLeft "-68"; repStart "1"; chrY rmsk exon 7840430 7841079 1705 + . gene_id "HERVS71_Yp11.2b"; transcript_id "HERVS71_Yp11.2b"; locus "HERVS71_Yp11.2b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0055"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_Yp11.2b ### chrY rmsk gene 7863557 7867768 . - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0145"; model_cov "2225"; model_pct "32.5"; chrY rmsk exon 7863557 7863693 513 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "371"; repStart "0"; chrY rmsk exon 7863776 7864169 1630 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "391"; repFamily "ERVK"; repLeft "1"; repStart "-116"; chrY rmsk exon 7864170 7865188 4142 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "5335"; repFamily "ERVK"; repLeft "4455"; repStart "-1502"; chrY rmsk exon 7865187 7865262 2827 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "2877"; repFamily "ERVK"; repLeft "2807"; repStart "-3960"; chrY rmsk exon 7865929 7866406 2827 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "2806"; repFamily "ERVK"; repLeft "2316"; repStart "-4031"; chrY rmsk exon 7866402 7867153 3841 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "786"; repFamily "ERVK"; repLeft "1"; repStart "-6051"; chrY rmsk exon 7867154 7867281 606 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "378"; repStart "0"; chrY rmsk exon 7867406 7867768 1553 - . gene_id "HML5_Yp11.2b"; transcript_id "HML5_Yp11.2b"; locus "HML5_Yp11.2b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0145"; repClass "LTR"; repEnd "373"; repFamily "ERVK"; repLeft "1"; repStart "-134"; ### HERVW_Yp11.2 ### chrY rmsk gene 7886024 7892639 . - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0324"; model_cov "5066"; model_pct "58.7"; chrY rmsk exon 7886024 7886809 4639 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 7886810 7887103 1944 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chrY rmsk exon 7887094 7887132 295 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "7548"; repFamily "ERV1"; repLeft "7510"; repStart "-1078"; chrY rmsk exon 7887126 7887687 3941 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5456"; repStart "-2607"; chrY rmsk exon 7887675 7888626 6279 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "3750"; repStart "-3923"; chrY rmsk exon 7888646 7889687 6793 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "3460"; repFamily "ERV1"; repLeft "2430"; repStart "-5166"; chrY rmsk exon 7889677 7890008 2159 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "2010"; repFamily "ERV1"; repLeft "1681"; repStart "-6616"; chrY rmsk exon 7890008 7891863 9557 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "1864"; repFamily "ERV1"; repLeft "2"; repStart "-6762"; chrY rmsk exon 7891864 7892639 4494 - . gene_id "HERVW_Yp11.2"; transcript_id "HERVW_Yp11.2"; locus "HERVW_Yp11.2"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0324"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### MER61_Yp11.2b ### chrY rmsk gene 7893624 7899441 . + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0433"; model_cov "4783"; model_pct "91.7"; chrY rmsk exon 7893624 7894033 1340 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0433"; repClass "LTR"; repEnd "402"; repFamily "ERV1"; repLeft "-25"; repStart "1"; chrY rmsk exon 7894118 7894244 352 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0433"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-5074"; repStart "19"; chrY rmsk exon 7894303 7894421 416 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0433"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "-4819"; repStart "280"; chrY rmsk exon 7894485 7894915 1588 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0433"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "-4377"; repStart "422"; chrY rmsk exon 7894916 7895176 1147 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0433"; repClass "LTR"; repEnd "1212"; repFamily "ERV1"; repLeft "-4005"; repStart "944"; chrY rmsk exon 7895173 7899007 9195 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0433"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "1361"; chrY rmsk exon 7899013 7899441 1546 + . gene_id "MER61_Yp11.2b"; transcript_id "MER61_Yp11.2b"; locus "MER61_Yp11.2b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0433"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-2"; repStart "5"; ### HERVK11D_Yp11.2 ### chrY rmsk gene 7952561 7961871 . - . gene_id "HERVK11D_Yp11.2"; transcript_id "HERVK11D_Yp11.2"; locus "HERVK11D_Yp11.2"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0029"; model_cov "7751"; model_pct "100.0"; chrY rmsk exon 7952561 7953439 6145 - . gene_id "HERVK11D_Yp11.2"; transcript_id "HERVK11D_Yp11.2"; locus "HERVK11D_Yp11.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0029"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 7953440 7960994 33544 - . gene_id "HERVK11D_Yp11.2"; transcript_id "HERVK11D_Yp11.2"; locus "HERVK11D_Yp11.2"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0029"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 7960995 7961871 6477 - . gene_id "HERVK11D_Yp11.2"; transcript_id "HERVK11D_Yp11.2"; locus "HERVK11D_Yp11.2"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0029"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### MER61_Yp11.2c ### chrY rmsk gene 7980657 7983445 . + . gene_id "MER61_Yp11.2c"; transcript_id "MER61_Yp11.2c"; locus "MER61_Yp11.2c"; category "internal"; intModel "MER61-int"; locid "MER61-int_0434"; model_cov "3360"; model_pct "64.4"; chrY rmsk exon 7980657 7983242 7952 + . gene_id "MER61_Yp11.2c"; transcript_id "MER61_Yp11.2c"; locus "MER61_Yp11.2c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0434"; repClass "LTR"; repEnd "4818"; repFamily "ERV1"; repLeft "-399"; repStart "1629"; chrY rmsk exon 7983270 7983445 788 + . gene_id "MER61_Yp11.2c"; transcript_id "MER61_Yp11.2c"; locus "MER61_Yp11.2c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0434"; repClass "LTR"; repEnd "5043"; repFamily "ERV1"; repLeft "-174"; repStart "4872"; ### HERVK11_Yp11.2 ### chrY rmsk gene 7991901 7998823 . - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0114"; model_cov "4766"; model_pct "59.9"; chrY rmsk exon 7991901 7992956 6273 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "1048"; repFamily "ERVK"; repLeft "1"; repStart "-23"; chrY rmsk exon 7992957 7993954 6988 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chrY rmsk exon 7993942 7995068 7873 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "5623"; repStart "-1188"; chrY rmsk exon 7995068 7995121 354 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "5571"; repFamily "ERVK"; repLeft "5467"; repStart "-2382"; chrY rmsk exon 7995113 7995252 869 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "4462"; repStart "-3352"; chrY rmsk exon 7995227 7996195 7304 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "3884"; repFamily "ERVK"; repLeft "2912"; repStart "-4069"; chrY rmsk exon 7996188 7996768 2701 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "1585"; repFamily "ERVK"; repLeft "1165"; repStart "-6368"; chrY rmsk exon 7996744 7997396 3455 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "872"; repFamily "ERVK"; repLeft "206"; repStart "-7081"; chrY rmsk exon 7997385 7997712 1926 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "328"; repFamily "ERVK"; repLeft "1"; repStart "-7625"; chrY rmsk exon 7997730 7998823 6183 - . gene_id "HERVK11_Yp11.2"; transcript_id "HERVK11_Yp11.2"; locus "HERVK11_Yp11.2"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0114"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "1"; repStart "-14"; ### MER61_Yp11.2d ### chrY rmsk gene 8104089 8106411 . + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0435"; model_cov "1803"; model_pct "34.6"; chrY rmsk exon 8104089 8104457 1424 + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0435"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-2"; repStart "59"; chrY rmsk exon 8104477 8104555 414 + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0435"; repClass "LTR"; repEnd "101"; repFamily "ERV1"; repLeft "-5116"; repStart "19"; chrY rmsk exon 8104694 8105258 1986 + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0435"; repClass "LTR"; repEnd "835"; repFamily "ERV1"; repLeft "-4382"; repStart "297"; chrY rmsk exon 8105247 8105502 1370 + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0435"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "952"; chrY rmsk exon 8105498 8106411 3896 + . gene_id "MER61_Yp11.2d"; transcript_id "MER61_Yp11.2d"; locus "MER61_Yp11.2d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0435"; repClass "LTR"; repEnd "2283"; repFamily "ERV1"; repLeft "-2934"; repStart "1361"; ### HERVK14C_Yp11.2a ### chrY rmsk gene 8121822 8126768 . - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0028"; model_cov "3827"; model_pct "51.5"; chrY rmsk exon 8121822 8122404 4226 - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0028"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 8122426 8124516 16314 - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0028"; repClass "LTR"; repEnd "7432"; repFamily "ERVK"; repLeft "5306"; repStart "-2"; chrY rmsk exon 8124509 8124656 1155 - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0028"; repClass "LTR"; repEnd "2546"; repFamily "ERVK"; repLeft "2400"; repStart "-4888"; chrY rmsk exon 8124642 8126183 11392 - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0028"; repClass "LTR"; repEnd "1556"; repFamily "ERVK"; repLeft "1"; repStart "-5878"; chrY rmsk exon 8126184 8126768 4100 - . gene_id "HERVK14C_Yp11.2a"; transcript_id "HERVK14C_Yp11.2a"; locus "HERVK14C_Yp11.2a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0028"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR19_Yp11.2c ### chrY rmsk gene 8173239 8175231 . - . gene_id "LTR19_Yp11.2c"; transcript_id "LTR19_Yp11.2c"; locus "LTR19_Yp11.2c"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0073"; model_cov "969"; model_pct "17.3"; chrY rmsk exon 8173239 8173800 3196 - . gene_id "LTR19_Yp11.2c"; transcript_id "LTR19_Yp11.2c"; locus "LTR19_Yp11.2c"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0073"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 8174023 8174570 2829 - . gene_id "LTR19_Yp11.2c"; transcript_id "LTR19_Yp11.2c"; locus "LTR19_Yp11.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0073"; repClass "LTR"; repEnd "5254"; repFamily "ERV1"; repLeft "4718"; repStart "-332"; chrY rmsk exon 8174570 8175231 3093 - . gene_id "LTR19_Yp11.2c"; transcript_id "LTR19_Yp11.2c"; locus "LTR19_Yp11.2c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0073"; repClass "LTR"; repEnd "4319"; repFamily "ERV1"; repLeft "3886"; repStart "-1267"; ### LTR25_Yp11.2b ### chrY rmsk gene 8176719 8177656 . - . gene_id "LTR25_Yp11.2b"; transcript_id "LTR25_Yp11.2b"; locus "LTR25_Yp11.2b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0162"; model_cov "940"; model_pct "13.1"; chrY rmsk exon 8176719 8177386 2900 - . gene_id "LTR25_Yp11.2b"; transcript_id "LTR25_Yp11.2b"; locus "LTR25_Yp11.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0162"; repClass "LTR"; repEnd "6029"; repFamily "ERV1"; repLeft "5354"; repStart "-1159"; chrY rmsk exon 8177385 8177656 1192 - . gene_id "LTR25_Yp11.2b"; transcript_id "LTR25_Yp11.2b"; locus "LTR25_Yp11.2b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0162"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "4631"; repStart "-2292"; ### LTR19_Yp11.2d ### chrY rmsk gene 8179162 8181149 . - . gene_id "LTR19_Yp11.2d"; transcript_id "LTR19_Yp11.2d"; locus "LTR19_Yp11.2d"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0074"; model_cov "1755"; model_pct "31.4"; chrY rmsk exon 8179162 8180000 5041 - . gene_id "LTR19_Yp11.2d"; transcript_id "LTR19_Yp11.2d"; locus "LTR19_Yp11.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0074"; repClass "LTR"; repEnd "1965"; repFamily "ERV1"; repLeft "1129"; repStart "-3621"; chrY rmsk exon 8179987 8180505 3746 - . gene_id "LTR19_Yp11.2d"; transcript_id "LTR19_Yp11.2d"; locus "LTR19_Yp11.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0074"; repClass "LTR"; repEnd "921"; repFamily "ERV1"; repLeft "334"; repStart "-4665"; chrY rmsk exon 8180542 8180857 3746 - . gene_id "LTR19_Yp11.2d"; transcript_id "LTR19_Yp11.2d"; locus "LTR19_Yp11.2d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0074"; repClass "LTR"; repEnd "333"; repFamily "ERV1"; repLeft "1"; repStart "-5253"; chrY rmsk exon 8180858 8181149 1606 - . gene_id "LTR19_Yp11.2d"; transcript_id "LTR19_Yp11.2d"; locus "LTR19_Yp11.2d"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0074"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "288"; repStart "0"; ### HML5_Yp11.2c ### chrY rmsk gene 8201318 8204061 . - . gene_id "HML5_Yp11.2c"; transcript_id "HML5_Yp11.2c"; locus "HML5_Yp11.2c"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0147"; model_cov "2544"; model_pct "37.2"; chrY rmsk exon 8201318 8201918 14388 - . gene_id "HML5_Yp11.2c"; transcript_id "HML5_Yp11.2c"; locus "HML5_Yp11.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0147"; repClass "LTR"; repEnd "2833"; repFamily "ERVK"; repLeft "2172"; repStart "-4004"; chrY rmsk exon 8202216 8204061 14388 - . gene_id "HML5_Yp11.2c"; transcript_id "HML5_Yp11.2c"; locus "HML5_Yp11.2c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0147"; repClass "LTR"; repEnd "1928"; repFamily "ERVK"; repLeft "45"; repStart "-4909"; ### MER61_Yp11.2e ### chrY rmsk gene 8304345 8305624 . - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0436"; model_cov "583"; model_pct "11.2"; chrY rmsk exon 8304345 8304646 1275 - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0436"; repClass "LTR"; repEnd "2281"; repFamily "ERV1"; repLeft "1982"; repStart "-2936"; chrY rmsk exon 8304944 8304987 1275 - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0436"; repClass "LTR"; repEnd "1981"; repFamily "ERV1"; repLeft "1939"; repStart "-3236"; chrY rmsk exon 8305090 8305210 462 - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0436"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "280"; repStart "-4819"; chrY rmsk exon 8305272 8305398 538 - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0436"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "19"; repStart "-5074"; chrY rmsk exon 8305416 8305624 531 - . gene_id "MER61_Yp11.2e"; transcript_id "MER61_Yp11.2e"; locus "MER61_Yp11.2e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0436"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "237"; repStart "0"; ### MER61_Yp11.2f ### chrY rmsk gene 8399573 8404632 . + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0437"; model_cov "5342"; model_pct "100.0"; chrY rmsk exon 8399573 8400000 1532 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0437"; repClass "LTR"; repEnd "424"; repFamily "ERV1"; repLeft "-3"; repStart "1"; chrY rmsk exon 8400012 8400125 527 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0437"; repClass "LTR"; repEnd "130"; repFamily "ERV1"; repLeft "-5087"; repStart "14"; chrY rmsk exon 8400203 8400760 2092 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0437"; repClass "LTR"; repEnd "839"; repFamily "ERV1"; repLeft "-4378"; repStart "280"; chrY rmsk exon 8400762 8401023 1407 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0437"; repClass "LTR"; repEnd "1208"; repFamily "ERV1"; repLeft "-4009"; repStart "944"; chrY rmsk exon 8401031 8403083 10011 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0437"; repClass "LTR"; repEnd "2620"; repFamily "ERV1"; repLeft "-2597"; repStart "-630"; chrY rmsk exon 8403067 8404202 4963 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0437"; repClass "LTR"; repEnd "5213"; repFamily "ERV1"; repLeft "-4"; repStart "4060"; chrY rmsk exon 8404206 8404632 2053 + . gene_id "MER61_Yp11.2f"; transcript_id "MER61_Yp11.2f"; locus "MER61_Yp11.2f"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0437"; repClass "LTR"; repEnd "425"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER61_Yp11.2g ### chrY rmsk gene 8487649 8488501 . - . gene_id "MER61_Yp11.2g"; transcript_id "MER61_Yp11.2g"; locus "MER61_Yp11.2g"; category "internal"; intModel "MER61-int"; locid "MER61-int_0438"; model_cov "1605"; model_pct "30.8"; chrY rmsk exon 8487649 8488501 3549 - . gene_id "MER61_Yp11.2g"; transcript_id "MER61_Yp11.2g"; locus "MER61_Yp11.2g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0438"; repClass "LTR"; repEnd "4156"; repFamily "ERV1"; repLeft "2551"; repStart "-1061"; ### HERVEA_Yp11.2a ### chrY rmsk gene 8535703 8545263 . + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0115"; model_cov "7760"; model_pct "98.9"; chrY rmsk exon 8535703 8536108 1975 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "53"; chrY rmsk exon 8536109 8538388 11483 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "2418"; repFamily "ERV1"; repLeft "-5429"; repStart "35"; chrY rmsk exon 8538367 8540258 11033 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "4365"; repFamily "ERV1"; repLeft "-3482"; repStart "2489"; chrY rmsk exon 8541417 8544792 16772 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "7846"; repFamily "ERV1"; repLeft "-1"; repStart "4345"; chrY rmsk exon 8544793 8544993 1793 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "208"; repFamily "ERV1"; repLeft "-255"; repStart "1"; chrY rmsk exon 8545033 8545263 1793 + . gene_id "HERVEA_Yp11.2a"; transcript_id "HERVEA_Yp11.2a"; locus "HERVEA_Yp11.2a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0115"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-2"; repStart "209"; ### HERVEA_Yp11.2b ### chrY rmsk gene 8646217 8652932 . + . gene_id "HERVEA_Yp11.2b"; transcript_id "HERVEA_Yp11.2b"; locus "HERVEA_Yp11.2b"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0116"; model_cov "5974"; model_pct "76.1"; chrY rmsk exon 8646217 8646674 2141 + . gene_id "HERVEA_Yp11.2b"; transcript_id "HERVEA_Yp11.2b"; locus "HERVEA_Yp11.2b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0116"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 8646675 8648347 6954 + . gene_id "HERVEA_Yp11.2b"; transcript_id "HERVEA_Yp11.2b"; locus "HERVEA_Yp11.2b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0116"; repClass "LTR"; repEnd "1840"; repFamily "ERV1"; repLeft "-6007"; repStart "35"; chrY rmsk exon 8648347 8652485 21778 + . gene_id "HERVEA_Yp11.2b"; transcript_id "HERVEA_Yp11.2b"; locus "HERVEA_Yp11.2b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0116"; repClass "LTR"; repEnd "7843"; repFamily "ERV1"; repLeft "-4"; repStart "3674"; chrY rmsk exon 8652489 8652932 1910 + . gene_id "HERVEA_Yp11.2b"; transcript_id "HERVEA_Yp11.2b"; locus "HERVEA_Yp11.2b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0116"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVE_Yp11.2b ### chrY rmsk gene 8712558 8718545 . + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0168"; model_cov "5282"; model_pct "67.6"; chrY rmsk exon 8712558 8712715 773 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "-29"; repStart "315"; chrY rmsk exon 8712766 8713361 2073 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "-7165"; repStart "-33"; chrY rmsk exon 8713803 8716319 6029 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "3376"; repFamily "ERV1"; repLeft "-4437"; repStart "658"; chrY rmsk exon 8716321 8717900 6710 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "6005"; repFamily "ERV1"; repLeft "-1808"; repStart "4375"; chrY rmsk exon 8717903 8718025 388 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "6505"; repFamily "ERV1"; repLeft "-1308"; repStart "6383"; chrY rmsk exon 8718054 8718184 747 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "0"; repStart "7682"; chrY rmsk exon 8718185 8718358 240 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "-288"; repStart "39"; chrY rmsk exon 8718359 8718545 920 + . gene_id "HERVE_Yp11.2b"; transcript_id "HERVE_Yp11.2b"; locus "HERVE_Yp11.2b"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0168"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "315"; ### HERVEA_Yp11.2c ### chrY rmsk gene 8802999 8811720 . + . gene_id "HERVEA_Yp11.2c"; transcript_id "HERVEA_Yp11.2c"; locus "HERVEA_Yp11.2c"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0117"; model_cov "7844"; model_pct "100.0"; chrY rmsk exon 8802999 8803460 3435 + . gene_id "HERVEA_Yp11.2c"; transcript_id "HERVEA_Yp11.2c"; locus "HERVEA_Yp11.2c"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0117"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 8803461 8811256 59774 + . gene_id "HERVEA_Yp11.2c"; transcript_id "HERVEA_Yp11.2c"; locus "HERVEA_Yp11.2c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0117"; repClass "LTR"; repEnd "7845"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 8811261 8811720 3314 + . gene_id "HERVEA_Yp11.2c"; transcript_id "HERVEA_Yp11.2c"; locus "HERVEA_Yp11.2c"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0117"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_Yp11.2c ### chrY rmsk gene 8829312 8832109 . + . gene_id "HERV9_Yp11.2c"; transcript_id "HERV9_Yp11.2c"; locus "HERV9_Yp11.2c"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0198"; model_cov "1887"; model_pct "22.4"; chrY rmsk exon 8829312 8829848 3413 + . gene_id "HERV9_Yp11.2c"; transcript_id "HERV9_Yp11.2c"; locus "HERV9_Yp11.2c"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0198"; repClass "LTR"; repEnd "595"; repFamily "ERV1"; repLeft "-231"; repStart "1"; chrY rmsk exon 8829862 8830753 6483 + . gene_id "HERV9_Yp11.2c"; transcript_id "HERV9_Yp11.2c"; locus "HERV9_Yp11.2c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0198"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "-5456"; repStart "2091"; chrY rmsk exon 8830753 8832109 6197 + . gene_id "HERV9_Yp11.2c"; transcript_id "HERV9_Yp11.2c"; locus "HERV9_Yp11.2c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0198"; repClass "LTR"; repEnd "8087"; repFamily "ERV1"; repLeft "-349"; repStart "7089"; ### HERVE_Yp11.2c ### chrY rmsk gene 8862721 8871459 . + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0169"; model_cov "7284"; model_pct "93.2"; chrY rmsk exon 8862721 8862887 3225 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "-307"; repStart "1"; chrY rmsk exon 8862926 8863231 3225 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-1"; repStart "195"; chrY rmsk exon 8863232 8865494 16359 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "-5554"; repStart "1"; chrY rmsk exon 8865489 8865976 3252 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "3192"; repFamily "ERV1"; repLeft "-4621"; repStart "2448"; chrY rmsk exon 8866633 8870941 31935 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "-1"; repStart "3530"; chrY rmsk exon 8870942 8871113 3509 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "194"; repFamily "ERV1"; repLeft "-307"; repStart "1"; chrY rmsk exon 8871155 8871459 3509 + . gene_id "HERVE_Yp11.2c"; transcript_id "HERVE_Yp11.2c"; locus "HERVE_Yp11.2c"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0169"; repClass "LTR"; repEnd "500"; repFamily "ERV1"; repLeft "-1"; repStart "195"; ### HERV9_Yp11.2d ### chrY rmsk gene 8979971 8989102 . + . gene_id "HERV9_Yp11.2d"; transcript_id "HERV9_Yp11.2d"; locus "HERV9_Yp11.2d"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0199"; model_cov "8125"; model_pct "96.3"; chrY rmsk exon 8979971 8980602 3793 + . gene_id "HERV9_Yp11.2d"; transcript_id "HERV9_Yp11.2d"; locus "HERV9_Yp11.2d"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0199"; repClass "LTR"; repEnd "1108"; repFamily "ERV1"; repLeft "-146"; repStart "370"; chrY rmsk exon 8980617 8985740 27751 + . gene_id "HERV9_Yp11.2d"; transcript_id "HERV9_Yp11.2d"; locus "HERV9_Yp11.2d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0199"; repClass "LTR"; repEnd "5436"; repFamily "ERV1"; repLeft "-3000"; repStart "2"; chrY rmsk exon 8985716 8988408 19151 + . gene_id "HERV9_Yp11.2d"; transcript_id "HERV9_Yp11.2d"; locus "HERV9_Yp11.2d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0199"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "5745"; chrY rmsk exon 8988409 8989102 3801 + . gene_id "HERV9_Yp11.2d"; transcript_id "HERV9_Yp11.2d"; locus "HERV9_Yp11.2d"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0199"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "-123"; repStart "370"; ### HERVE_Yp11.2d ### chrY rmsk gene 8991802 8992963 . + . gene_id "HERVE_Yp11.2d"; transcript_id "HERVE_Yp11.2d"; locus "HERVE_Yp11.2d"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0170"; model_cov "1160"; model_pct "14.8"; chrY rmsk exon 8991802 8992963 6182 + . gene_id "HERVE_Yp11.2d"; transcript_id "HERVE_Yp11.2d"; locus "HERVE_Yp11.2d"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0170"; repClass "LTR"; repEnd "5536"; repFamily "ERV1"; repLeft "-2277"; repStart "4376"; ### HERVK14C_Yp11.2b ### chrY rmsk gene 8996063 9000785 . + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0029"; model_cov "4167"; model_pct "56.1"; chrY rmsk exon 8996063 8997447 9634 + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0029"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "-5653"; repStart "376"; chrY rmsk exon 8997448 8998081 4604 + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0029"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "-4890"; repStart "1907"; chrY rmsk exon 8998076 8999998 14411 + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0029"; repClass "LTR"; repEnd "7227"; repFamily "ERVK"; repLeft "-207"; repStart "5306"; chrY rmsk exon 9000001 9000200 1257 + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0029"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "7230"; chrY rmsk exon 9000201 9000785 4210 + . gene_id "HERVK14C_Yp11.2b"; transcript_id "HERVK14C_Yp11.2b"; locus "HERVK14C_Yp11.2b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0029"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_Yp11.2e ### chrY rmsk gene 9042994 9046913 . + . gene_id "HERV9_Yp11.2e"; transcript_id "HERV9_Yp11.2e"; locus "HERV9_Yp11.2e"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0200"; model_cov "2995"; model_pct "35.5"; chrY rmsk exon 9042994 9043721 4573 + . gene_id "HERV9_Yp11.2e"; transcript_id "HERV9_Yp11.2e"; locus "HERV9_Yp11.2e"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0200"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 9043748 9046131 8496 + . gene_id "HERV9_Yp11.2e"; transcript_id "HERV9_Yp11.2e"; locus "HERV9_Yp11.2e"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0200"; repClass "LTR"; repEnd "2401"; repFamily "ERV1"; repLeft "-6035"; repStart "60"; chrY rmsk exon 9046261 9046913 5116 + . gene_id "HERV9_Yp11.2e"; transcript_id "HERV9_Yp11.2e"; locus "HERV9_Yp11.2e"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0200"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-5383"; repStart "2399"; ### HML5_Yp11.2d ### chrY rmsk gene 9116372 9119920 . - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0148"; model_cov "2269"; model_pct "33.2"; chrY rmsk exon 9116372 9116710 1452 - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0148"; repClass "LTR"; repEnd "343"; repFamily "ERVK"; repLeft "1"; repStart "-149"; chrY rmsk exon 9116711 9117104 1382 - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0148"; repClass "LTR"; repEnd "5096"; repFamily "ERVK"; repLeft "4752"; repStart "-1741"; chrY rmsk exon 9117081 9118392 4611 - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0148"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "3655"; repStart "-1758"; chrY rmsk exon 9118889 9119397 2640 - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0148"; repClass "LTR"; repEnd "504"; repFamily "ERVK"; repLeft "3"; repStart "-6333"; chrY rmsk exon 9119417 9119920 2311 - . gene_id "HML5_Yp11.2d"; transcript_id "HML5_Yp11.2d"; locus "HML5_Yp11.2d"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0148"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_Yp11.2c ### chrY rmsk gene 9125052 9126374 . + . gene_id "LTR25_Yp11.2c"; transcript_id "LTR25_Yp11.2c"; locus "LTR25_Yp11.2c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0163"; model_cov "993"; model_pct "13.8"; chrY rmsk exon 9125052 9125434 2869 + . gene_id "LTR25_Yp11.2c"; transcript_id "LTR25_Yp11.2c"; locus "LTR25_Yp11.2c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0163"; repClass "LTR"; repEnd "1187"; repFamily "ERV1"; repLeft "-6001"; repStart "818"; chrY rmsk exon 9125749 9126374 2869 + . gene_id "LTR25_Yp11.2c"; transcript_id "LTR25_Yp11.2c"; locus "LTR25_Yp11.2c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0163"; repClass "LTR"; repEnd "1812"; repFamily "ERV1"; repLeft "-5376"; repStart "1188"; ### HUERSP3_Yp11.2b ### chrY rmsk gene 9127236 9129184 . - . gene_id "HUERSP3_Yp11.2b"; transcript_id "HUERSP3_Yp11.2b"; locus "HUERSP3_Yp11.2b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0237"; model_cov "1683"; model_pct "18.9"; chrY rmsk exon 9127236 9127288 4099 - . gene_id "HUERSP3_Yp11.2b"; transcript_id "HUERSP3_Yp11.2b"; locus "HUERSP3_Yp11.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0237"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8876"; repStart "0"; chrY rmsk exon 9127583 9129184 4099 - . gene_id "HUERSP3_Yp11.2b"; transcript_id "HUERSP3_Yp11.2b"; locus "HUERSP3_Yp11.2b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0237"; repClass "LTR"; repEnd "8875"; repFamily "ERV1"; repLeft "7235"; repStart "-44"; ### LTR25_Yp11.2d ### chrY rmsk gene 9132631 9141443 . + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0165"; model_cov "4394"; model_pct "61.1"; chrY rmsk exon 9132631 9133609 2619 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "1060"; repFamily "ERV1"; repLeft "-6128"; repStart "203"; chrY rmsk exon 9135341 9135748 1043 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "1453"; repFamily "ERV1"; repLeft "-5735"; repStart "1047"; chrY rmsk exon 9135755 9136123 1698 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "375"; repFamily "ERV1"; repLeft "-469"; repStart "1"; chrY rmsk exon 9136150 9136346 1698 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "560"; repFamily "ERV1"; repLeft "-284"; repStart "376"; chrY rmsk exon 9136342 9136454 679 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "-203"; repStart "529"; chrY rmsk exon 9136458 9136562 3969 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "4145"; repFamily "ERV1"; repLeft "-3043"; repStart "4041"; chrY rmsk exon 9136843 9137075 3969 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "-2818"; repStart "4146"; chrY rmsk exon 9137336 9138049 3969 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "5072"; repFamily "ERV1"; repLeft "-2116"; repStart "4371"; chrY rmsk exon 9138274 9139290 7131 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "6145"; repFamily "ERV1"; repLeft "-1043"; repStart "5085"; chrY rmsk exon 9139608 9140644 7131 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "6146"; chrY rmsk exon 9140645 9141443 2533 + . gene_id "LTR25_Yp11.2d"; transcript_id "LTR25_Yp11.2d"; locus "LTR25_Yp11.2d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0165"; repClass "LTR"; repEnd "762"; repFamily "ERV1"; repLeft "-82"; repStart "1"; ### LTR25_Yp11.2e ### chrY rmsk gene 9141962 9142707 . - . gene_id "LTR25_Yp11.2e"; transcript_id "LTR25_Yp11.2e"; locus "LTR25_Yp11.2e"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0166"; model_cov "721"; model_pct "10.0"; chrY rmsk exon 9141962 9142707 2494 - . gene_id "LTR25_Yp11.2e"; transcript_id "LTR25_Yp11.2e"; locus "LTR25_Yp11.2e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0166"; repClass "LTR"; repEnd "2614"; repFamily "ERV1"; repLeft "1893"; repStart "-4574"; ### LTR25_Yp11.2f ### chrY rmsk gene 9142771 9145263 . - . gene_id "LTR25_Yp11.2f"; transcript_id "LTR25_Yp11.2f"; locus "LTR25_Yp11.2f"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0167"; model_cov "1915"; model_pct "26.6"; chrY rmsk exon 9142771 9143413 3497 - . gene_id "LTR25_Yp11.2f"; transcript_id "LTR25_Yp11.2f"; locus "LTR25_Yp11.2f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0167"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "6554"; repStart "-3"; chrY rmsk exon 9143684 9144025 3497 - . gene_id "LTR25_Yp11.2f"; transcript_id "LTR25_Yp11.2f"; locus "LTR25_Yp11.2f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0167"; repClass "LTR"; repEnd "6553"; repFamily "ERV1"; repLeft "6221"; repStart "-635"; chrY rmsk exon 9144051 9144178 2239 - . gene_id "LTR25_Yp11.2f"; transcript_id "LTR25_Yp11.2f"; locus "LTR25_Yp11.2f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0167"; repClass "LTR"; repEnd "5833"; repFamily "ERV1"; repLeft "5717"; repStart "-1355"; chrY rmsk exon 9144473 9145263 2239 - . gene_id "LTR25_Yp11.2f"; transcript_id "LTR25_Yp11.2f"; locus "LTR25_Yp11.2f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0167"; repClass "LTR"; repEnd "5716"; repFamily "ERV1"; repLeft "4880"; repStart "-1472"; ### HML3_Yp11.2a ### chrY rmsk gene 9145264 9150314 . - . gene_id "HML3_Yp11.2a"; transcript_id "HML3_Yp11.2a"; locus "HML3_Yp11.2a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0251"; model_cov "4678"; model_pct "77.7"; chrY rmsk exon 9145264 9145772 3691 - . gene_id "HML3_Yp11.2a"; transcript_id "HML3_Yp11.2a"; locus "HML3_Yp11.2a"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0251"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 9145775 9148027 14298 - . gene_id "HML3_Yp11.2a"; transcript_id "HML3_Yp11.2a"; locus "HML3_Yp11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0251"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "3723"; repStart "-3"; chrY rmsk exon 9148028 9150314 17475 - . gene_id "HML3_Yp11.2a"; transcript_id "HML3_Yp11.2a"; locus "HML3_Yp11.2a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0251"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "415"; repStart "-3223"; ### LTR25_Yp11.2g ### chrY rmsk gene 9151328 9153501 . - . gene_id "LTR25_Yp11.2g"; transcript_id "LTR25_Yp11.2g"; locus "LTR25_Yp11.2g"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0168"; model_cov "2200"; model_pct "30.6"; chrY rmsk exon 9151328 9152781 4971 - . gene_id "LTR25_Yp11.2g"; transcript_id "LTR25_Yp11.2g"; locus "LTR25_Yp11.2g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0168"; repClass "LTR"; repEnd "4885"; repFamily "ERV1"; repLeft "3402"; repStart "-2303"; chrY rmsk exon 9152782 9153501 2302 - . gene_id "LTR25_Yp11.2g"; transcript_id "LTR25_Yp11.2g"; locus "LTR25_Yp11.2g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0168"; repClass "LTR"; repEnd "1677"; repFamily "ERV1"; repLeft "960"; repStart "-5511"; ### LTR25_Yp11.2h ### chrY rmsk gene 9153504 9156214 . + . gene_id "LTR25_Yp11.2h"; transcript_id "LTR25_Yp11.2h"; locus "LTR25_Yp11.2h"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0169"; model_cov "1618"; model_pct "22.5"; chrY rmsk exon 9153504 9154372 3303 + . gene_id "LTR25_Yp11.2h"; transcript_id "LTR25_Yp11.2h"; locus "LTR25_Yp11.2h"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0169"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 9154373 9154469 298 + . gene_id "LTR25_Yp11.2h"; transcript_id "LTR25_Yp11.2h"; locus "LTR25_Yp11.2h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0169"; repClass "LTR"; repEnd "106"; repFamily "ERV1"; repLeft "-7082"; repStart "1"; chrY rmsk exon 9154457 9155099 8007 + . gene_id "LTR25_Yp11.2h"; transcript_id "LTR25_Yp11.2h"; locus "LTR25_Yp11.2h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0169"; repClass "LTR"; repEnd "907"; repFamily "ERV1"; repLeft "-6281"; repStart "255"; chrY rmsk exon 9155413 9156214 8007 + . gene_id "LTR25_Yp11.2h"; transcript_id "LTR25_Yp11.2h"; locus "LTR25_Yp11.2h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0169"; repClass "LTR"; repEnd "1769"; repFamily "ERV1"; repLeft "-5419"; repStart "908"; ### LTR25_Yp11.2i ### chrY rmsk gene 9156485 9157874 . + . gene_id "LTR25_Yp11.2i"; transcript_id "LTR25_Yp11.2i"; locus "LTR25_Yp11.2i"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0170"; model_cov "1415"; model_pct "19.7"; chrY rmsk exon 9156485 9157874 8007 + . gene_id "LTR25_Yp11.2i"; transcript_id "LTR25_Yp11.2i"; locus "LTR25_Yp11.2i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0170"; repClass "LTR"; repEnd "1303"; repFamily "ERV1"; repLeft "-5885"; repStart "-112"; ### LTR25_Yp11.2j ### chrY rmsk gene 9157920 9161260 . - . gene_id "LTR25_Yp11.2j"; transcript_id "LTR25_Yp11.2j"; locus "LTR25_Yp11.2j"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0171"; model_cov "2674"; model_pct "37.2"; chrY rmsk exon 9157920 9159474 9091 - . gene_id "LTR25_Yp11.2j"; transcript_id "LTR25_Yp11.2j"; locus "LTR25_Yp11.2j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0171"; repClass "LTR"; repEnd "2678"; repFamily "ERV1"; repLeft "1135"; repStart "-4510"; chrY rmsk exon 9159775 9160882 9091 - . gene_id "LTR25_Yp11.2j"; transcript_id "LTR25_Yp11.2j"; locus "LTR25_Yp11.2j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0171"; repClass "LTR"; repEnd "1134"; repFamily "ERV1"; repLeft "3"; repStart "-6054"; chrY rmsk exon 9160888 9161260 701 - . gene_id "LTR25_Yp11.2j"; transcript_id "LTR25_Yp11.2j"; locus "LTR25_Yp11.2j"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0171"; repClass "LTR"; repEnd "843"; repFamily "ERV1"; repLeft "451"; repStart "-1"; ### HERVL_Yp11.2g ### chrY rmsk gene 9174656 9181286 . - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1428"; model_cov "5493"; model_pct "97.2"; chrY rmsk exon 9174656 9175028 1847 - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1428"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "12"; repStart "-44"; chrY rmsk exon 9175036 9175365 23177 - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1428"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "5363"; repStart "-1"; chrY rmsk exon 9175670 9179021 23177 - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1428"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "1998"; repStart "-292"; chrY rmsk exon 9179027 9180862 11443 - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1428"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "1"; repStart "-3814"; chrY rmsk exon 9180865 9181286 2175 - . gene_id "HERVL_Yp11.2g"; transcript_id "HERVL_Yp11.2g"; locus "HERVL_Yp11.2g"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1428"; repClass "LTR"; repEnd "442"; repFamily "ERVL"; repLeft "1"; repStart "-2"; ### HML5_Yp11.2e ### chrY rmsk gene 9207854 9216516 . - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0149"; model_cov "6301"; model_pct "92.2"; chrY rmsk exon 9207854 9208353 2232 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "2"; repStart "0"; chrY rmsk exon 9208355 9209162 5065 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "6029"; repStart "0"; chrY rmsk exon 9210240 9210280 5065 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "6028"; repFamily "ERVK"; repLeft "5993"; repStart "-809"; chrY rmsk exon 9210309 9210383 30494 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "5886"; repFamily "ERVK"; repLeft "5845"; repStart "-951"; chrY rmsk exon 9210665 9215527 30494 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "5844"; repFamily "ERVK"; repLeft "911"; repStart "-993"; chrY rmsk exon 9215535 9216021 2709 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "8"; repStart "-6345"; chrY rmsk exon 9216030 9216516 2417 - . gene_id "HML5_Yp11.2e"; transcript_id "HML5_Yp11.2e"; locus "HML5_Yp11.2e"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0149"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVL_Yp11.2d ### chrY rmsk gene 9216517 9220487 . + . gene_id "ERVL_Yp11.2d"; transcript_id "ERVL_Yp11.2d"; locus "ERVL_Yp11.2d"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0515"; model_cov "4488"; model_pct "78.0"; chrY rmsk exon 9216517 9219717 14023 + . gene_id "ERVL_Yp11.2d"; transcript_id "ERVL_Yp11.2d"; locus "ERVL_Yp11.2d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0515"; repClass "LTR"; repEnd "4613"; repFamily "ERVL"; repLeft "-1144"; repStart "876"; chrY rmsk exon 9219730 9220487 4596 + . gene_id "ERVL_Yp11.2d"; transcript_id "ERVL_Yp11.2d"; locus "ERVL_Yp11.2d"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0515"; repClass "LTR"; repEnd "5755"; repFamily "ERVL"; repLeft "-2"; repStart "5004"; ### HML3_Yp11.2b ### chrY rmsk gene 9238048 9245090 . + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0253"; model_cov "4998"; model_pct "83.0"; chrY rmsk exon 9238048 9238567 4055 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "3"; chrY rmsk exon 9238568 9239330 6162 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "824"; repFamily "ERVK"; repLeft "-5197"; repStart "1"; chrY rmsk exon 9239387 9240227 6162 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "1735"; repFamily "ERVK"; repLeft "-4286"; repStart "825"; chrY rmsk exon 9241340 9241884 4264 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "2275"; repFamily "ERVK"; repLeft "-3746"; repStart "1730"; chrY rmsk exon 9241884 9242240 2900 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "2440"; chrY rmsk exon 9242241 9242677 3252 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "4155"; repFamily "ERVK"; repLeft "-1866"; repStart "3723"; chrY rmsk exon 9242658 9244572 14767 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "-3"; repStart "4088"; chrY rmsk exon 9244575 9245090 3985 + . gene_id "HML3_Yp11.2b"; transcript_id "HML3_Yp11.2b"; locus "HML3_Yp11.2b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0253"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK14C_Yp11.2c ### chrY rmsk gene 9273708 9279128 . - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0030"; model_cov "4535"; model_pct "61.0"; chrY rmsk exon 9273708 9274293 4396 - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0030"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 9274294 9276398 16461 - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0030"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "5306"; repStart "0"; chrY rmsk exon 9276393 9277008 5009 - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0030"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "1917"; repStart "-4890"; chrY rmsk exon 9277001 9278792 13127 - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0030"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "1"; repStart "-5653"; chrY rmsk exon 9278793 9279128 4082 - . gene_id "HERVK14C_Yp11.2c"; transcript_id "HERVK14C_Yp11.2c"; locus "HERVK14C_Yp11.2c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0030"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "257"; repStart "0"; ### HERVE_Yp11.2e ### chrY rmsk gene 9280408 9289007 . - . gene_id "HERVE_Yp11.2e"; transcript_id "HERVE_Yp11.2e"; locus "HERVE_Yp11.2e"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0171"; model_cov "7810"; model_pct "100.0"; chrY rmsk exon 9280408 9280856 1973 - . gene_id "HERVE_Yp11.2e"; transcript_id "HERVE_Yp11.2e"; locus "HERVE_Yp11.2e"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0171"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 9280857 9288557 20069 - . gene_id "HERVE_Yp11.2e"; transcript_id "HERVE_Yp11.2e"; locus "HERVE_Yp11.2e"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0171"; repClass "LTR"; repEnd "7811"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 9288558 9289007 1928 - . gene_id "HERVE_Yp11.2e"; transcript_id "HERVE_Yp11.2e"; locus "HERVE_Yp11.2e"; repName "LTR2"; geneRegion "ltr"; locid "HERVE-int_0171"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVE_Yp11.2f ### chrY rmsk gene 9774747 9779201 . - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0172"; model_cov "4349"; model_pct "55.7"; chrY rmsk exon 9774747 9774933 1155 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "315"; repStart "0"; chrY rmsk exon 9774934 9775107 252 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "213"; repFamily "ERV1"; repLeft "39"; repStart "-288"; chrY rmsk exon 9775108 9775274 778 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "7812"; repFamily "ERV1"; repLeft "7620"; repStart "-1"; chrY rmsk exon 9775270 9775399 616 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "6506"; repFamily "ERV1"; repLeft "6372"; repStart "-1307"; chrY rmsk exon 9775401 9776893 3859 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "5999"; repFamily "ERV1"; repLeft "4386"; repStart "-1814"; chrY rmsk exon 9776893 9779201 9976 - . gene_id "HERVE_Yp11.2f"; transcript_id "HERVE_Yp11.2f"; locus "HERVE_Yp11.2f"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0172"; repClass "LTR"; repEnd "4094"; repFamily "ERV1"; repLeft "1684"; repStart "-3719"; ### HML5_Yp11.2f ### chrY rmsk gene 9973838 9981144 . + . gene_id "HML5_Yp11.2f"; transcript_id "HML5_Yp11.2f"; locus "HML5_Yp11.2f"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0150"; model_cov "6783"; model_pct "99.2"; chrY rmsk exon 9973838 9980574 38950 + . gene_id "HML5_Yp11.2f"; transcript_id "HML5_Yp11.2f"; locus "HML5_Yp11.2f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0150"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "-2"; repStart "52"; chrY rmsk exon 9980576 9981144 4084 + . gene_id "HML5_Yp11.2f"; transcript_id "HML5_Yp11.2f"; locus "HML5_Yp11.2f"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0150"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR19_Yp11.2e ### chrY rmsk gene 9993374 9995460 . + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0075"; model_cov "1453"; model_pct "26.0"; chrY rmsk exon 9993374 9993638 1463 + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0075"; repClass "LTR"; repEnd "578"; repFamily "ERV1"; repLeft "-2"; repStart "307"; chrY rmsk exon 9993641 9993956 4070 + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0075"; repClass "LTR"; repEnd "334"; repFamily "ERV1"; repLeft "-5252"; repStart "1"; chrY rmsk exon 9994012 9994533 4070 + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0075"; repClass "LTR"; repEnd "921"; repFamily "ERV1"; repLeft "-4665"; repStart "335"; chrY rmsk exon 9994501 9994704 1070 + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0075"; repClass "LTR"; repEnd "1310"; repFamily "ERV1"; repLeft "-4276"; repStart "1113"; chrY rmsk exon 9995133 9995460 1955 + . gene_id "LTR19_Yp11.2e"; transcript_id "LTR19_Yp11.2e"; locus "LTR19_Yp11.2e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0075"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "-3949"; repStart "1300"; ### HERVH_Yp11.2f ### chrY rmsk gene 10047168 10053754 . - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1305"; model_cov "5681"; model_pct "73.7"; chrY rmsk exon 10047168 10047522 1439 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 10047523 10048090 3103 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrY rmsk exon 10048086 10050149 11213 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "6014"; repFamily "ERV1"; repLeft "3995"; repStart "-1699"; chrY rmsk exon 10050167 10050805 3555 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3359"; repStart "-3720"; chrY rmsk exon 10050808 10052842 11333 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "800"; repStart "-4883"; chrY rmsk exon 10052865 10053352 1684 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "17"; repStart "-7254"; chrY rmsk exon 10053370 10053754 2461 - . gene_id "HERVH_Yp11.2f"; transcript_id "HERVH_Yp11.2f"; locus "HERVH_Yp11.2f"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1305"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_Yp11.2 ### chrY rmsk gene 10124241 10130290 . + . gene_id "PRIMA41_Yp11.2"; transcript_id "PRIMA41_Yp11.2"; locus "PRIMA41_Yp11.2"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0180"; model_cov "4583"; model_pct "59.1"; chrY rmsk exon 10124241 10124401 1881 + . gene_id "PRIMA41_Yp11.2"; transcript_id "PRIMA41_Yp11.2"; locus "PRIMA41_Yp11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0180"; repClass "LTR"; repEnd "1733"; repFamily "ERV1"; repLeft "-6023"; repStart "1578"; chrY rmsk exon 10125303 10128041 7472 + . gene_id "PRIMA41_Yp11.2"; transcript_id "PRIMA41_Yp11.2"; locus "PRIMA41_Yp11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0180"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "1734"; chrY rmsk exon 10128690 10130290 7472 + . gene_id "PRIMA41_Yp11.2"; transcript_id "PRIMA41_Yp11.2"; locus "PRIMA41_Yp11.2"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0180"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "4519"; ### HML3_Yq11.21 ### chrY rmsk gene 11235711 11239522 . - . gene_id "HML3_Yq11.21"; transcript_id "HML3_Yq11.21"; locus "HML3_Yq11.21"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0254"; model_cov "3347"; model_pct "55.6"; chrY rmsk exon 11235711 11236030 2337 - . gene_id "HML3_Yq11.21"; transcript_id "HML3_Yq11.21"; locus "HML3_Yq11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0254"; repClass "LTR"; repEnd "4915"; repFamily "ERVK"; repLeft "4594"; repStart "-1106"; chrY rmsk exon 11236037 11236266 1778 - . gene_id "HML3_Yq11.21"; transcript_id "HML3_Yq11.21"; locus "HML3_Yq11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0254"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chrY rmsk exon 11236267 11239067 21520 - . gene_id "HML3_Yq11.21"; transcript_id "HML3_Yq11.21"; locus "HML3_Yq11.21"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0254"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chrY rmsk exon 11239068 11239522 3251 - . gene_id "HML3_Yq11.21"; transcript_id "HML3_Yq11.21"; locus "HML3_Yq11.21"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0254"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_Yq11.21a ### chrY rmsk gene 11239523 11241581 . - . gene_id "HML1_Yq11.21a"; transcript_id "HML1_Yq11.21a"; locus "HML1_Yq11.21a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0132"; model_cov "1786"; model_pct "29.3"; chrY rmsk exon 11239523 11241206 12985 - . gene_id "HML1_Yq11.21a"; transcript_id "HML1_Yq11.21a"; locus "HML1_Yq11.21a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0132"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "204"; repStart "-4207"; chrY rmsk exon 11241201 11241301 655 - . gene_id "HML1_Yq11.21a"; transcript_id "HML1_Yq11.21a"; locus "HML1_Yq11.21a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0132"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "1"; repStart "-5994"; chrY rmsk exon 11241302 11241581 1871 - . gene_id "HML1_Yq11.21a"; transcript_id "HML1_Yq11.21a"; locus "HML1_Yq11.21a"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0132"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_Yq11.21 ### chrY rmsk gene 11468744 11472783 . - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1429"; model_cov "3310"; model_pct "58.5"; chrY rmsk exon 11468744 11469127 2708 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chrY rmsk exon 11469131 11471562 13855 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "5651"; repFamily "ERVL"; repLeft "3099"; repStart "-3"; chrY rmsk exon 11471559 11472055 3459 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1318"; repStart "-3840"; chrY rmsk exon 11472046 11472308 1755 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chrY rmsk exon 11472309 11472351 2481 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "378"; repStart "0"; chrY rmsk exon 11472408 11472783 2481 - . gene_id "HERVL_Yq11.21"; transcript_id "HERVL_Yq11.21"; locus "HERVL_Yq11.21"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1429"; repClass "LTR"; repEnd "377"; repFamily "ERVL"; repLeft "2"; repStart "-67"; ### HERVH_Yq11.21 ### chrY rmsk gene 11888488 11896674 . - . gene_id "HERVH_Yq11.21"; transcript_id "HERVH_Yq11.21"; locus "HERVH_Yq11.21"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1306"; model_cov "7712"; model_pct "100.0"; chrY rmsk exon 11888488 11888849 2103 - . gene_id "HERVH_Yq11.21"; transcript_id "HERVH_Yq11.21"; locus "HERVH_Yq11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1306"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 11888850 11896201 35641 - . gene_id "HERVH_Yq11.21"; transcript_id "HERVH_Yq11.21"; locus "HERVH_Yq11.21"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1306"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 11896202 11896293 636 - . gene_id "HERVH_Yq11.21"; transcript_id "HERVH_Yq11.21"; locus "HERVH_Yq11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1306"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "360"; repStart "0"; chrY rmsk exon 11896309 11896674 2338 - . gene_id "HERVH_Yq11.21"; transcript_id "HERVH_Yq11.21"; locus "HERVH_Yq11.21"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1306"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HARLEQUIN_Yq11.21 ### chrY rmsk gene 12146699 12153814 . - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0190"; model_cov "6153"; model_pct "89.2"; chrY rmsk exon 12146699 12147156 3311 - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0190"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 12147157 12148469 9269 - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0190"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "5578"; repStart "0"; chrY rmsk exon 12148612 12150050 10556 - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0190"; repClass "LTR"; repEnd "4953"; repFamily "ERV1"; repLeft "3496"; repStart "-1943"; chrY rmsk exon 12150051 12153368 21936 - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0190"; repClass "LTR"; repEnd "3379"; repFamily "ERV1"; repLeft "1"; repStart "-3517"; chrY rmsk exon 12153373 12153814 2916 - . gene_id "HARLEQUIN_Yq11.21"; transcript_id "HARLEQUIN_Yq11.21"; locus "HARLEQUIN_Yq11.21"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0190"; repClass "LTR"; repEnd "447"; repFamily "ERV1"; repLeft "4"; repStart "-16"; ### HERVEA_Yq11.21 ### chrY rmsk gene 12245476 12252038 . + . gene_id "HERVEA_Yq11.21"; transcript_id "HERVEA_Yq11.21"; locus "HERVEA_Yq11.21"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0118"; model_cov "5595"; model_pct "71.3"; chrY rmsk exon 12245476 12245973 2417 + . gene_id "HERVEA_Yq11.21"; transcript_id "HERVEA_Yq11.21"; locus "HERVEA_Yq11.21"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0118"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 12245974 12246904 6582 + . gene_id "HERVEA_Yq11.21"; transcript_id "HERVEA_Yq11.21"; locus "HERVEA_Yq11.21"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0118"; repClass "LTR"; repEnd "954"; repFamily "ERV1"; repLeft "-6893"; repStart "1"; chrY rmsk exon 12246906 12251517 30541 + . gene_id "HERVEA_Yq11.21"; transcript_id "HERVEA_Yq11.21"; locus "HERVEA_Yq11.21"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0118"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "3205"; chrY rmsk exon 12251518 12252038 1832 + . gene_id "HERVEA_Yq11.21"; transcript_id "HERVEA_Yq11.21"; locus "HERVEA_Yq11.21"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0118"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_Yq11.21 ### chrY rmsk gene 12260791 12267046 . - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0201"; model_cov "4679"; model_pct "55.5"; chrY rmsk exon 12260791 12261476 4709 - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0201"; repClass "LTR"; repEnd "667"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 12261477 12262239 5935 - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0201"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7664"; repStart "0"; chrY rmsk exon 12262238 12263310 4974 - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0201"; repClass "LTR"; repEnd "7803"; repFamily "ERV1"; repLeft "6875"; repStart "-633"; chrY rmsk exon 12263310 12266315 21548 - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0201"; repClass "LTR"; repEnd "2980"; repFamily "ERV1"; repLeft "1"; repStart "-5456"; chrY rmsk exon 12266316 12267046 4944 - . gene_id "HERV9_Yq11.21"; transcript_id "HERV9_Yq11.21"; locus "HERV9_Yq11.21"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0201"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFH21_Yq11.21 ### chrY rmsk gene 12281617 12288137 . - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0044"; model_cov "5303"; model_pct "81.2"; chrY rmsk exon 12281617 12282035 2922 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 12282036 12282419 1168 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "6529"; repFamily "ERV1"; repLeft "6159"; repStart "0"; chrY rmsk exon 12282429 12282626 522 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "6183"; repFamily "ERV1"; repLeft "5986"; repStart "-346"; chrY rmsk exon 12282684 12282878 21649 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "4740"; repFamily "ERV1"; repLeft "4530"; repStart "-1789"; chrY rmsk exon 12282911 12284881 21649 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "2474"; repStart "-2000"; chrY rmsk exon 12285170 12287684 21649 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "2473"; repFamily "ERV1"; repLeft "2"; repStart "-4056"; chrY rmsk exon 12287698 12288137 2522 - . gene_id "HERVFH21_Yq11.21"; transcript_id "HERVFH21_Yq11.21"; locus "HERVFH21_Yq11.21"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0044"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Yq11.21 ### chrY rmsk gene 12296394 12306188 . - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; category "unknown"; intModel "MER4B-int"; locid "MER4B-int_0565"; model_cov "3140"; model_pct "46.5"; chrY rmsk exon 12296394 12296502 1790 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "6621"; repStart "-32"; chrY rmsk exon 12297059 12297322 1790 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "6620"; repFamily "ERV1"; repLeft "6365"; repStart "-138"; chrY rmsk exon 12297505 12298137 7013 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "6304"; repFamily "ERV1"; repLeft "5689"; repStart "-454"; chrY rmsk exon 12298448 12299206 7013 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "5688"; repFamily "ERV1"; repLeft "4911"; repStart "-1070"; chrY rmsk exon 12299207 12299502 1642 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "900"; repFamily "ERV1"; repLeft "600"; repStart "0"; chrY rmsk exon 12300385 12300553 1082 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "4337"; repFamily "ERV1"; repLeft "4169"; repStart "-2421"; chrY rmsk exon 12300786 12300865 455 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "4186"; repFamily "ERV1"; repLeft "4107"; repStart "-2572"; chrY rmsk exon 12301609 12301753 714 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "4105"; repFamily "ERV1"; repLeft "3969"; repStart "-2653"; chrY rmsk exon 12302560 12302891 5000 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "3956"; repFamily "ERV1"; repLeft "3638"; repStart "-2802"; chrY rmsk exon 12303194 12303290 5000 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "3637"; repFamily "ERV1"; repLeft "3538"; repStart "-3121"; chrY rmsk exon 12303508 12303901 5000 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "3537"; repFamily "ERV1"; repLeft "3155"; repStart "-3221"; chrY rmsk exon 12305132 12305168 5000 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "3154"; repFamily "ERV1"; repLeft "3119"; repStart "-3604"; chrY rmsk exon 12305349 12305524 703 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "1196"; repFamily "ERV1"; repLeft "1025"; repStart "-5562"; chrY rmsk exon 12305795 12306188 1714 - . gene_id "MER4B_Yq11.21"; transcript_id "MER4B_Yq11.21"; locus "MER4B_Yq11.21"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0565"; repClass "LTR"; repEnd "570"; repFamily "ERV1"; repLeft "155"; repStart "-40"; ### HML1_Yq11.21b ### chrY rmsk gene 12321453 12327775 . + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0133"; model_cov "2817"; model_pct "46.2"; chrY rmsk exon 12321453 12321586 1041 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "-5735"; repStart "227"; chrY rmsk exon 12323246 12324274 8518 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "2874"; repFamily "ERVK"; repLeft "-3222"; repStart "1827"; chrY rmsk exon 12325107 12325231 8518 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "2997"; repFamily "ERVK"; repLeft "-3099"; repStart "2875"; chrY rmsk exon 12325231 12325575 8667 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "4759"; repFamily "ERVK"; repLeft "-1337"; repStart "4414"; chrY rmsk exon 12326265 12327025 8667 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4760"; chrY rmsk exon 12327025 12327239 1357 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "-199"; repStart "5656"; chrY rmsk exon 12327302 12327429 847 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "0"; repStart "5960"; chrY rmsk exon 12327433 12327775 2779 + . gene_id "HML1_Yq11.21b"; transcript_id "HML1_Yq11.21b"; locus "HML1_Yq11.21b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0133"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVS71_Yq11.21 ### chrY rmsk gene 12354337 12361993 . - . gene_id "HERVS71_Yq11.21"; transcript_id "HERVS71_Yq11.21"; locus "HERVS71_Yq11.21"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0056"; model_cov "7167"; model_pct "79.8"; chrY rmsk exon 12354337 12354555 1091 - . gene_id "HERVS71_Yq11.21"; transcript_id "HERVS71_Yq11.21"; locus "HERVS71_Yq11.21"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0056"; repClass "LTR"; repEnd "8875"; repFamily "ERV1"; repLeft "8659"; repStart "-103"; chrY rmsk exon 12354547 12361431 36602 - . gene_id "HERVS71_Yq11.21"; transcript_id "HERVS71_Yq11.21"; locus "HERVS71_Yq11.21"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0056"; repClass "LTR"; repEnd "6955"; repFamily "ERV1"; repLeft "4"; repStart "-2023"; chrY rmsk exon 12361434 12361993 4353 - . gene_id "HERVS71_Yq11.21"; transcript_id "HERVS71_Yq11.21"; locus "HERVS71_Yq11.21"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0056"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### HERVIP10F_Yq11.221 ### chrY rmsk gene 12469022 12472218 . - . gene_id "HERVIP10F_Yq11.221"; transcript_id "HERVIP10F_Yq11.221"; locus "HERVIP10F_Yq11.221"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0129"; model_cov "2637"; model_pct "34.1"; chrY rmsk exon 12469022 12469577 2749 - . gene_id "HERVIP10F_Yq11.221"; transcript_id "HERVIP10F_Yq11.221"; locus "HERVIP10F_Yq11.221"; repName "LTR10A"; geneRegion "ltr"; locid "HERVIP10F-int_0129"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "1"; repStart "-54"; chrY rmsk exon 12469580 12472218 13429 - . gene_id "HERVIP10F_Yq11.221"; transcript_id "HERVIP10F_Yq11.221"; locus "HERVIP10F_Yq11.221"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0129"; repClass "LTR"; repEnd "7732"; repFamily "ERV1"; repLeft "5095"; repStart "-5"; ### HERVEA_Yq11.221a ### chrY rmsk gene 12472219 12476798 . - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0119"; model_cov "4634"; model_pct "59.1"; chrY rmsk exon 12472219 12472681 2794 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrY rmsk exon 12472683 12473996 10425 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "6517"; repStart "0"; chrY rmsk exon 12474003 12474749 6250 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "5953"; repFamily "ERV1"; repLeft "5201"; repStart "-1894"; chrY rmsk exon 12474738 12475674 2518 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "4435"; repFamily "ERV1"; repLeft "2583"; repStart "-3412"; chrY rmsk exon 12476168 12476252 2518 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "2716"; repFamily "ERV1"; repLeft "2632"; repStart "-5131"; chrY rmsk exon 12476243 12476798 1508 - . gene_id "HERVEA_Yq11.221a"; transcript_id "HERVEA_Yq11.221a"; locus "HERVEA_Yq11.221a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0119"; repClass "LTR"; repEnd "2383"; repFamily "ERV1"; repLeft "1767"; repStart "-5464"; ### HERVH_Yq11.221a ### chrY rmsk gene 12559210 12565355 . - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1307"; model_cov "5995"; model_pct "77.7"; chrY rmsk exon 12559210 12559597 2649 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrY rmsk exon 12559599 12560156 3666 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrY rmsk exon 12560150 12560572 2275 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "5590"; repStart "-1697"; chrY rmsk exon 12560564 12561052 3375 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4660"; repStart "-2564"; chrY rmsk exon 12561055 12562291 5480 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "5729"; repFamily "ERV1"; repLeft "4199"; repStart "-1984"; chrY rmsk exon 12562271 12564968 13366 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chrY rmsk exon 12564971 12565355 2711 - . gene_id "HERVH_Yq11.221a"; transcript_id "HERVH_Yq11.221a"; locus "HERVH_Yq11.221a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1307"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HARLEQUIN_Yq11.221a ### chrY rmsk gene 12567039 12569571 . + . gene_id "HARLEQUIN_Yq11.221a"; transcript_id "HARLEQUIN_Yq11.221a"; locus "HARLEQUIN_Yq11.221a"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0191"; model_cov "2120"; model_pct "30.7"; chrY rmsk exon 12567039 12567495 3550 + . gene_id "HARLEQUIN_Yq11.221a"; transcript_id "HARLEQUIN_Yq11.221a"; locus "HARLEQUIN_Yq11.221a"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0191"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 12567496 12569571 14536 + . gene_id "HARLEQUIN_Yq11.221a"; transcript_id "HARLEQUIN_Yq11.221a"; locus "HARLEQUIN_Yq11.221a"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0191"; repClass "LTR"; repEnd "2121"; repFamily "ERV1"; repLeft "-4775"; repStart "1"; ### HARLEQUIN_Yq11.221b ### chrY rmsk gene 12575697 12577943 . + . gene_id "HARLEQUIN_Yq11.221b"; transcript_id "HARLEQUIN_Yq11.221b"; locus "HARLEQUIN_Yq11.221b"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0192"; model_cov "2256"; model_pct "32.7"; chrY rmsk exon 12575697 12577943 17422 + . gene_id "HARLEQUIN_Yq11.221b"; transcript_id "HARLEQUIN_Yq11.221b"; locus "HARLEQUIN_Yq11.221b"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0192"; repClass "LTR"; repEnd "4369"; repFamily "ERV1"; repLeft "-2527"; repStart "2113"; ### MER4_Yq11.221a ### chrY rmsk gene 12588388 12590752 . - . gene_id "MER4_Yq11.221a"; transcript_id "MER4_Yq11.221a"; locus "MER4_Yq11.221a"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0978"; model_cov "1568"; model_pct "23.8"; chrY rmsk exon 12588388 12588521 2591 - . gene_id "MER4_Yq11.221a"; transcript_id "MER4_Yq11.221a"; locus "MER4_Yq11.221a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0978"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "1"; repStart "-337"; chrY rmsk exon 12589136 12590611 8247 - . gene_id "MER4_Yq11.221a"; transcript_id "MER4_Yq11.221a"; locus "MER4_Yq11.221a"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0978"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "5030"; repStart "0"; chrY rmsk exon 12590612 12590752 1051 - . gene_id "MER4_Yq11.221a"; transcript_id "MER4_Yq11.221a"; locus "MER4_Yq11.221a"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0978"; repClass "LTR"; repEnd "145"; repFamily "ERV1"; repLeft "1"; repStart "-327"; ### HERVFH21_Yq11.221 ### chrY rmsk gene 12593596 12598991 . - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; category "prototype"; intModel "HERVFH21-int"; locid "HERVFH21-int_0045"; model_cov "4542"; model_pct "69.6"; chrY rmsk exon 12593596 12593727 596 - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0045"; repClass "LTR"; repEnd "437"; repFamily "ERV1"; repLeft "307"; repStart "0"; chrY rmsk exon 12593999 12594686 1043 - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0045"; repClass "LTR"; repEnd "6404"; repFamily "ERV1"; repLeft "5700"; repStart "-125"; chrY rmsk exon 12594807 12595253 1652 - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0045"; repClass "LTR"; repEnd "3838"; repFamily "ERV1"; repLeft "3392"; repStart "-2691"; chrY rmsk exon 12595350 12598859 10573 - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0045"; repClass "LTR"; repEnd "3393"; repFamily "ERV1"; repLeft "1"; repStart "-3136"; chrY rmsk exon 12598862 12598991 684 - . gene_id "HERVFH21_Yq11.221"; transcript_id "HERVFH21_Yq11.221"; locus "HERVFH21_Yq11.221"; repName "LTR21B"; geneRegion "ltr"; locid "HERVFH21-int_0045"; repClass "LTR"; repEnd "435"; repFamily "ERV1"; repLeft "307"; repStart "-2"; ### HERV9_Yq11.221a ### chrY rmsk gene 12599767 12608740 . - . gene_id "HERV9_Yq11.221a"; transcript_id "HERV9_Yq11.221a"; locus "HERV9_Yq11.221a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0202"; model_cov "7972"; model_pct "94.5"; chrY rmsk exon 12599767 12600303 3882 - . gene_id "HERV9_Yq11.221a"; transcript_id "HERV9_Yq11.221a"; locus "HERV9_Yq11.221a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0202"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 12600308 12602531 16316 - . gene_id "HERV9_Yq11.221a"; transcript_id "HERV9_Yq11.221a"; locus "HERV9_Yq11.221a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0202"; repClass "LTR"; repEnd "8432"; repFamily "ERV1"; repLeft "6181"; repStart "-4"; chrY rmsk exon 12602528 12608220 43668 - . gene_id "HERV9_Yq11.221a"; transcript_id "HERV9_Yq11.221a"; locus "HERV9_Yq11.221a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0202"; repClass "LTR"; repEnd "5775"; repFamily "ERV1"; repLeft "54"; repStart "-2661"; chrY rmsk exon 12608241 12608740 3067 - . gene_id "HERV9_Yq11.221a"; transcript_id "HERV9_Yq11.221a"; locus "HERV9_Yq11.221a"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0202"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Yq11.221a ### chrY rmsk gene 12668114 12677969 . - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0566"; model_cov "6269"; model_pct "92.8"; chrY rmsk exon 12668114 12668695 2533 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "-46"; chrY rmsk exon 12668696 12668946 17325 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "6532"; repStart "0"; chrY rmsk exon 12669277 12671344 17325 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "6531"; repFamily "ERV1"; repLeft "4427"; repStart "-227"; chrY rmsk exon 12671643 12672556 17325 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "4426"; repFamily "ERV1"; repLeft "3473"; repStart "-2332"; chrY rmsk exon 12672563 12672763 6628 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "2951"; repFamily "ERV1"; repLeft "2737"; repStart "-3807"; chrY rmsk exon 12673365 12673602 6628 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "2736"; repFamily "ERV1"; repLeft "2511"; repStart "-4022"; chrY rmsk exon 12673898 12674449 6628 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "2510"; repFamily "ERV1"; repLeft "1937"; repStart "-4248"; chrY rmsk exon 12674742 12675421 6628 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "1936"; repFamily "ERV1"; repLeft "828"; repStart "-4822"; chrY rmsk exon 12675416 12675474 404 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "979"; repStart "-5721"; chrY rmsk exon 12675563 12675808 1202 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "770"; repFamily "ERV1"; repLeft "527"; repStart "-5988"; chrY rmsk exon 12676365 12676643 1775 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "520"; repFamily "ERV1"; repLeft "238"; repStart "-6238"; chrY rmsk exon 12676680 12676877 1471 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "285"; repFamily "ERV1"; repLeft "100"; repStart "-6473"; chrY rmsk exon 12677172 12677279 1471 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "99"; repFamily "ERV1"; repLeft "1"; repStart "-6659"; chrY rmsk exon 12677280 12677417 2594 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "482"; repStart "-71"; chrY rmsk exon 12677727 12677969 2594 - . gene_id "MER4B_Yq11.221a"; transcript_id "MER4B_Yq11.221a"; locus "MER4B_Yq11.221a"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0566"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "275"; repStart "-129"; ### MER4_Yq11.221b ### chrY rmsk gene 12680864 12688304 . + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0979"; model_cov "4746"; model_pct "71.9"; chrY rmsk exon 12680864 12681321 2960 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0979"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 12681325 12681851 2726 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "-6124"; repStart "1"; chrY rmsk exon 12681848 12682096 1327 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "1268"; repFamily "ERV1"; repLeft "-5330"; repStart "1005"; chrY rmsk exon 12682103 12682235 599 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "1613"; repFamily "ERV1"; repLeft "-4985"; repStart "1480"; chrY rmsk exon 12682237 12682422 3518 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "1980"; repFamily "ERV1"; repLeft "-4618"; repStart "1804"; chrY rmsk exon 12682711 12683132 3518 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "2428"; repFamily "ERV1"; repLeft "-4170"; repStart "1981"; chrY rmsk exon 12683452 12683480 3518 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "2441"; repFamily "ERV1"; repLeft "-4157"; repStart "2429"; chrY rmsk exon 12683764 12683868 3518 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "-4078"; repStart "2442"; chrY rmsk exon 12684082 12684562 2205 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "3246"; repFamily "ERV1"; repLeft "-3352"; repStart "2736"; chrY rmsk exon 12684560 12685101 14387 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "4472"; repFamily "ERV1"; repLeft "-2126"; repStart "3924"; chrY rmsk exon 12685410 12686624 14387 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "5714"; repFamily "ERV1"; repLeft "-884"; repStart "4473"; chrY rmsk exon 12686919 12687822 14387 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0979"; repClass "LTR"; repEnd "6580"; repFamily "ERV1"; repLeft "-18"; repStart "5715"; chrY rmsk exon 12687855 12688304 2953 + . gene_id "MER4_Yq11.221b"; transcript_id "MER4_Yq11.221b"; locus "MER4_Yq11.221b"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0979"; repClass "LTR"; repEnd "469"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### MER41_Yq11.221a ### chrY rmsk gene 12693892 12697964 . - . gene_id "MER41_Yq11.221a"; transcript_id "MER41_Yq11.221a"; locus "MER41_Yq11.221a"; category "internal"; intModel "MER41-int"; locid "MER41-int_0637"; model_cov "5308"; model_pct "89.3"; chrY rmsk exon 12693892 12695247 11965 - . gene_id "MER41_Yq11.221a"; transcript_id "MER41_Yq11.221a"; locus "MER41_Yq11.221a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0637"; repClass "LTR"; repEnd "5945"; repFamily "ERV1"; repLeft "3351"; repStart "-1"; chrY rmsk exon 12695555 12696829 11965 - . gene_id "MER41_Yq11.221a"; transcript_id "MER41_Yq11.221a"; locus "MER41_Yq11.221a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0637"; repClass "LTR"; repEnd "4592"; repFamily "ERV1"; repLeft "3229"; repStart "-1354"; chrY rmsk exon 12697118 12697964 11965 - . gene_id "MER41_Yq11.221a"; transcript_id "MER41_Yq11.221a"; locus "MER41_Yq11.221a"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0637"; repClass "LTR"; repEnd "3228"; repFamily "ERV1"; repLeft "1877"; repStart "-2718"; ### MER41_Yq11.221b ### chrY rmsk gene 12698035 12698826 . - . gene_id "MER41_Yq11.221b"; transcript_id "MER41_Yq11.221b"; locus "MER41_Yq11.221b"; category "internal"; intModel "MER41-int"; locid "MER41-int_0638"; model_cov "1267"; model_pct "21.3"; chrY rmsk exon 12698035 12698826 11965 - . gene_id "MER41_Yq11.221b"; transcript_id "MER41_Yq11.221b"; locus "MER41_Yq11.221b"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0638"; repClass "LTR"; repEnd "3228"; repFamily "ERV1"; repLeft "1961"; repStart "-2718"; ### LTR25_Yq11.221a ### chrY rmsk gene 12744501 12749585 . - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0172"; model_cov "6501"; model_pct "90.4"; chrY rmsk exon 12744501 12746732 9837 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "2749"; repStart "-1"; chrY rmsk exon 12747033 12747060 442 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "5056"; repFamily "ERV1"; repLeft "5039"; repStart "-2132"; chrY rmsk exon 12747034 12747868 9126 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "4145"; repFamily "ERV1"; repLeft "3485"; repStart "-3043"; chrY rmsk exon 12748176 12749125 9126 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "3484"; repFamily "ERV1"; repLeft "2493"; repStart "-3704"; chrY rmsk exon 12749144 12749198 328 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "2318"; repFamily "ERV1"; repLeft "2264"; repStart "-4870"; chrY rmsk exon 12749263 12749585 1193 - . gene_id "LTR25_Yq11.221a"; transcript_id "LTR25_Yq11.221a"; locus "LTR25_Yq11.221a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0172"; repClass "LTR"; repEnd "-167"; repFamily "ERV1"; repLeft "-508"; repStart "-7355"; ### HUERSP3_Yq11.221 ### chrY rmsk gene 12892330 12898440 . + . gene_id "HUERSP3_Yq11.221"; transcript_id "HUERSP3_Yq11.221"; locus "HUERSP3_Yq11.221"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0240"; model_cov "6373"; model_pct "71.5"; chrY rmsk exon 12892330 12892892 1929 + . gene_id "HUERSP3_Yq11.221"; transcript_id "HUERSP3_Yq11.221"; locus "HUERSP3_Yq11.221"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0240"; repClass "LTR"; repEnd "3609"; repFamily "ERV1"; repLeft "-5310"; repStart "2890"; chrY rmsk exon 12892888 12895022 20158 + . gene_id "HUERSP3_Yq11.221"; transcript_id "HUERSP3_Yq11.221"; locus "HUERSP3_Yq11.221"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0240"; repClass "LTR"; repEnd "5509"; repFamily "ERV1"; repLeft "-3410"; repStart "3264"; chrY rmsk exon 12895201 12898440 20158 + . gene_id "HUERSP3_Yq11.221"; transcript_id "HUERSP3_Yq11.221"; locus "HUERSP3_Yq11.221"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0240"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "5510"; ### HUERSP2_Yq11.221 ### chrY rmsk gene 12922349 12926718 . - . gene_id "HUERSP2_Yq11.221"; transcript_id "HUERSP2_Yq11.221"; locus "HUERSP2_Yq11.221"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0130"; model_cov "3002"; model_pct "97.2"; chrY rmsk exon 12922349 12923114 4065 - . gene_id "HUERSP2_Yq11.221"; transcript_id "HUERSP2_Yq11.221"; locus "HUERSP2_Yq11.221"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0130"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 12923115 12925804 7889 - . gene_id "HUERSP2_Yq11.221"; transcript_id "HUERSP2_Yq11.221"; locus "HUERSP2_Yq11.221"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0130"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "213"; repStart "0"; chrY rmsk exon 12925827 12925953 504 - . gene_id "HUERSP2_Yq11.221"; transcript_id "HUERSP2_Yq11.221"; locus "HUERSP2_Yq11.221"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0130"; repClass "LTR"; repEnd "128"; repFamily "ERV1"; repLeft "1"; repStart "-2960"; chrY rmsk exon 12925954 12926718 4411 - . gene_id "HUERSP2_Yq11.221"; transcript_id "HUERSP2_Yq11.221"; locus "HUERSP2_Yq11.221"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0130"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVFRD_Yq11.221 ### chrY rmsk gene 12966204 12969549 . - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0228"; model_cov "1744"; model_pct "24.2"; chrY rmsk exon 12966204 12966799 2181 - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; repName "MER50B"; geneRegion "ltr"; locid "MER50-int_0228"; repClass "LTR"; repEnd "557"; repFamily "ERV1"; repLeft "1"; repStart "-140"; chrY rmsk exon 12966801 12966975 5362 - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0228"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "7013"; repStart "-9"; chrY rmsk exon 12967339 12968043 5362 - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0228"; repClass "LTR"; repEnd "7012"; repFamily "ERV1"; repLeft "6295"; repStart "-193"; chrY rmsk exon 12968411 12968868 4683 - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0228"; repClass "LTR"; repEnd "6298"; repFamily "ERV1"; repLeft "5842"; repStart "-907"; chrY rmsk exon 12969162 12969549 4683 - . gene_id "HERVFRD_Yq11.221"; transcript_id "HERVFRD_Yq11.221"; locus "HERVFRD_Yq11.221"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0228"; repClass "LTR"; repEnd "5841"; repFamily "ERV1"; repLeft "5453"; repStart "-1364"; ### HERVKC4_Yq11.221 ### chrY rmsk gene 12993872 13001093 . - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0026"; model_cov "5238"; model_pct "99.5"; chrY rmsk exon 12993872 12994429 3723 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 12994453 12994536 353 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "5237"; repFamily "ERVK"; repLeft "5150"; repStart "-25"; chrY rmsk exon 12995012 12999291 27342 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "5154"; repFamily "ERVK"; repLeft "925"; repStart "-108"; chrY rmsk exon 12999595 13000000 27342 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "924"; repFamily "ERVK"; repLeft "539"; repStart "-4338"; chrY rmsk exon 13000001 13000535 3370 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "538"; repFamily "ERVK"; repLeft "1"; repStart "-4724"; chrY rmsk exon 13000536 13001093 3763 - . gene_id "HERVKC4_Yq11.221"; transcript_id "HERVKC4_Yq11.221"; locus "HERVKC4_Yq11.221"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0026"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_Yq11.221a ### chrY rmsk gene 13049694 13055241 . + . gene_id "ERVLB4_Yq11.221a"; transcript_id "ERVLB4_Yq11.221a"; locus "ERVLB4_Yq11.221a"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1957"; model_cov "3963"; model_pct "69.4"; chrY rmsk exon 13049694 13049759 1805 + . gene_id "ERVLB4_Yq11.221a"; transcript_id "ERVLB4_Yq11.221a"; locus "ERVLB4_Yq11.221a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1957"; repClass "LTR"; repEnd "770"; repFamily "ERVL"; repLeft "-4944"; repStart "707"; chrY rmsk exon 13050182 13050666 1805 + . gene_id "ERVLB4_Yq11.221a"; transcript_id "ERVLB4_Yq11.221a"; locus "ERVLB4_Yq11.221a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1957"; repClass "LTR"; repEnd "1288"; repFamily "ERVL"; repLeft "-4426"; repStart "771"; chrY rmsk exon 13051861 13053713 7066 + . gene_id "ERVLB4_Yq11.221a"; transcript_id "ERVLB4_Yq11.221a"; locus "ERVLB4_Yq11.221a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1957"; repClass "LTR"; repEnd "3122"; repFamily "ERVL"; repLeft "-2592"; repStart "1286"; chrY rmsk exon 13053725 13055241 6838 + . gene_id "ERVLB4_Yq11.221a"; transcript_id "ERVLB4_Yq11.221a"; locus "ERVLB4_Yq11.221a"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1957"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "-838"; repStart "3329"; ### LTR19_Yq11.221a ### chrY rmsk gene 13067227 13069605 . + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0076"; model_cov "1344"; model_pct "24.1"; chrY rmsk exon 13067227 13067685 3162 + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0076"; repClass "LTR"; repEnd "3456"; repFamily "ERV1"; repLeft "-2130"; repStart "2997"; chrY rmsk exon 13068175 13068319 738 + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0076"; repClass "LTR"; repEnd "3495"; repFamily "ERV1"; repLeft "-2091"; repStart "3364"; chrY rmsk exon 13068379 13068670 1963 + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0076"; repClass "LTR"; repEnd "4381"; repFamily "ERV1"; repLeft "-1205"; repStart "4087"; chrY rmsk exon 13068666 13069123 3172 + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0076"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "5126"; chrY rmsk exon 13069124 13069605 3241 + . gene_id "LTR19_Yq11.221a"; transcript_id "LTR19_Yq11.221a"; locus "LTR19_Yq11.221a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0076"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR19_Yq11.221b ### chrY rmsk gene 13098968 13100020 . - . gene_id "LTR19_Yq11.221b"; transcript_id "LTR19_Yq11.221b"; locus "LTR19_Yq11.221b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0077"; model_cov "559"; model_pct "10.0"; chrY rmsk exon 13098968 13099465 2366 - . gene_id "LTR19_Yq11.221b"; transcript_id "LTR19_Yq11.221b"; locus "LTR19_Yq11.221b"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0077"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 13099472 13100020 3603 - . gene_id "LTR19_Yq11.221b"; transcript_id "LTR19_Yq11.221b"; locus "LTR19_Yq11.221b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0077"; repClass "LTR"; repEnd "5580"; repFamily "ERV1"; repLeft "5021"; repStart "-6"; ### MER4_Yq11.221c ### chrY rmsk gene 13168831 13169733 . + . gene_id "MER4_Yq11.221c"; transcript_id "MER4_Yq11.221c"; locus "MER4_Yq11.221c"; category "internal"; intModel "MER4-int"; locid "MER4-int_0981"; model_cov "1285"; model_pct "19.5"; chrY rmsk exon 13168831 13168905 409 + . gene_id "MER4_Yq11.221c"; transcript_id "MER4_Yq11.221c"; locus "MER4_Yq11.221c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0981"; repClass "LTR"; repEnd "-1218"; repFamily "ERV1"; repLeft "-7816"; repStart "-1284"; chrY rmsk exon 13168905 13169298 1399 + . gene_id "MER4_Yq11.221c"; transcript_id "MER4_Yq11.221c"; locus "MER4_Yq11.221c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0981"; repClass "LTR"; repEnd "1267"; repFamily "ERV1"; repLeft "-5331"; repStart "517"; chrY rmsk exon 13169297 13169733 2167 + . gene_id "MER4_Yq11.221c"; transcript_id "MER4_Yq11.221c"; locus "MER4_Yq11.221c"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0981"; repClass "LTR"; repEnd "2273"; repFamily "ERV1"; repLeft "-4325"; repStart "1804"; ### HML3_Yq11.221a ### chrY rmsk gene 13169734 13175843 . - . gene_id "HML3_Yq11.221a"; transcript_id "HML3_Yq11.221a"; locus "HML3_Yq11.221a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0255"; model_cov "5164"; model_pct "85.8"; chrY rmsk exon 13169734 13170236 3615 - . gene_id "HML3_Yq11.221a"; transcript_id "HML3_Yq11.221a"; locus "HML3_Yq11.221a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0255"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 13170237 13174763 33732 - . gene_id "HML3_Yq11.221a"; transcript_id "HML3_Yq11.221a"; locus "HML3_Yq11.221a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0255"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "1436"; repStart "0"; chrY rmsk exon 13174762 13175335 4162 - . gene_id "HML3_Yq11.221a"; transcript_id "HML3_Yq11.221a"; locus "HML3_Yq11.221a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0255"; repClass "LTR"; repEnd "580"; repFamily "ERVK"; repLeft "1"; repStart "-5441"; chrY rmsk exon 13175336 13175843 3885 - . gene_id "HML3_Yq11.221a"; transcript_id "HML3_Yq11.221a"; locus "HML3_Yq11.221a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0255"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_Yq11.221d ### chrY rmsk gene 13175844 13179057 . + . gene_id "MER4_Yq11.221d"; transcript_id "MER4_Yq11.221d"; locus "MER4_Yq11.221d"; category "internal"; intModel "MER4-int"; locid "MER4-int_0982"; model_cov "3051"; model_pct "46.2"; chrY rmsk exon 13175844 13176025 1339 + . gene_id "MER4_Yq11.221d"; transcript_id "MER4_Yq11.221d"; locus "MER4_Yq11.221d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0982"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "-4166"; repStart "2268"; chrY rmsk exon 13176318 13176394 1339 + . gene_id "MER4_Yq11.221d"; transcript_id "MER4_Yq11.221d"; locus "MER4_Yq11.221d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0982"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2433"; chrY rmsk exon 13176616 13176954 1756 + . gene_id "MER4_Yq11.221d"; transcript_id "MER4_Yq11.221d"; locus "MER4_Yq11.221d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0982"; repClass "LTR"; repEnd "3069"; repFamily "ERV1"; repLeft "-3529"; repStart "2737"; chrY rmsk exon 13177233 13179057 8136 + . gene_id "MER4_Yq11.221d"; transcript_id "MER4_Yq11.221d"; locus "MER4_Yq11.221d"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0982"; repClass "LTR"; repEnd "5563"; repFamily "ERV1"; repLeft "-1035"; repStart "3070"; ### HML3_Yq11.221b ### chrY rmsk gene 13252527 13259365 . + . gene_id "HML3_Yq11.221b"; transcript_id "HML3_Yq11.221b"; locus "HML3_Yq11.221b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0256"; model_cov "5819"; model_pct "96.6"; chrY rmsk exon 13252527 13253036 3910 + . gene_id "HML3_Yq11.221b"; transcript_id "HML3_Yq11.221b"; locus "HML3_Yq11.221b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0256"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 13253037 13256437 26497 + . gene_id "HML3_Yq11.221b"; transcript_id "HML3_Yq11.221b"; locus "HML3_Yq11.221b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0256"; repClass "LTR"; repEnd "3421"; repFamily "ERVK"; repLeft "-2600"; repStart "1"; chrY rmsk exon 13256464 13258853 19368 + . gene_id "HML3_Yq11.221b"; transcript_id "HML3_Yq11.221b"; locus "HML3_Yq11.221b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0256"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "3622"; chrY rmsk exon 13258854 13259365 3932 + . gene_id "HML3_Yq11.221b"; transcript_id "HML3_Yq11.221b"; locus "HML3_Yq11.221b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0256"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HARLEQUIN_Yq11.221c ### chrY rmsk gene 13282300 13289717 . + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0194"; model_cov "5549"; model_pct "80.5"; chrY rmsk exon 13282300 13282776 3590 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 13282777 13283145 2431 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "380"; repFamily "ERV1"; repLeft "-6516"; repStart "1"; chrY rmsk exon 13283141 13283786 4759 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "-6003"; repStart "262"; chrY rmsk exon 13283787 13284725 5888 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "4484"; repFamily "ERV1"; repLeft "-2412"; repStart "3503"; chrY rmsk exon 13284725 13286565 13128 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "5210"; repFamily "ERV1"; repLeft "-1686"; repStart "3352"; chrY rmsk exon 13287551 13289255 9533 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "5196"; chrY rmsk exon 13289256 13289717 3403 + . gene_id "HARLEQUIN_Yq11.221c"; transcript_id "HARLEQUIN_Yq11.221c"; locus "HARLEQUIN_Yq11.221c"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0194"; repClass "LTR"; repEnd "482"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### MER4_Yq11.221e ### chrY rmsk gene 13315667 13321859 . + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; category "prototype"; intModel "MER4-int"; locid "MER4-int_0984"; model_cov "4289"; model_pct "65.0"; chrY rmsk exon 13315667 13316108 2482 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0984"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 13316113 13316809 3201 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "835"; repFamily "ERV1"; repLeft "-5763"; repStart "2"; chrY rmsk exon 13316908 13316955 281 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "-5712"; repStart "839"; chrY rmsk exon 13316954 13317013 384 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "-5546"; repStart "993"; chrY rmsk exon 13317303 13317379 469 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "2419"; chrY rmsk exon 13317615 13317879 2844 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "3028"; repFamily "ERV1"; repLeft "-3570"; repStart "2737"; chrY rmsk exon 13318225 13318728 2844 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "3535"; repFamily "ERV1"; repLeft "-3063"; repStart "3029"; chrY rmsk exon 13319004 13319190 2844 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "3678"; repFamily "ERV1"; repLeft "-2920"; repStart "3536"; chrY rmsk exon 13319199 13321304 10868 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "6088"; repFamily "ERV1"; repLeft "-510"; repStart "3842"; chrY rmsk exon 13321307 13321396 679 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0984"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "6495"; chrY rmsk exon 13321416 13321859 2931 + . gene_id "MER4_Yq11.221e"; transcript_id "MER4_Yq11.221e"; locus "MER4_Yq11.221e"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0984"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### LTR25_Yq11.221b ### chrY rmsk gene 13552210 13559268 . + . gene_id "LTR25_Yq11.221b"; transcript_id "LTR25_Yq11.221b"; locus "LTR25_Yq11.221b"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0173"; model_cov "5593"; model_pct "77.8"; chrY rmsk exon 13552210 13552436 4163 + . gene_id "LTR25_Yq11.221b"; transcript_id "LTR25_Yq11.221b"; locus "LTR25_Yq11.221b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0173"; repClass "LTR"; repEnd "831"; repFamily "ERV1"; repLeft "-13"; repStart "636"; chrY rmsk exon 13553097 13553743 16564 + . gene_id "LTR25_Yq11.221b"; transcript_id "LTR25_Yq11.221b"; locus "LTR25_Yq11.221b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0173"; repClass "LTR"; repEnd "919"; repFamily "ERV1"; repLeft "-6269"; repStart "271"; chrY rmsk exon 13554064 13557797 19581 + . gene_id "LTR25_Yq11.221b"; transcript_id "LTR25_Yq11.221b"; locus "LTR25_Yq11.221b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0173"; repClass "LTR"; repEnd "4695"; repFamily "ERV1"; repLeft "-2493"; repStart "920"; chrY rmsk exon 13558103 13559268 19581 + . gene_id "LTR25_Yq11.221b"; transcript_id "LTR25_Yq11.221b"; locus "LTR25_Yq11.221b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0173"; repClass "LTR"; repEnd "5866"; repFamily "ERV1"; repLeft "-1322"; repStart "4696"; ### LTR25_Yq11.221c ### chrY rmsk gene 13565668 13567687 . + . gene_id "LTR25_Yq11.221c"; transcript_id "LTR25_Yq11.221c"; locus "LTR25_Yq11.221c"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0174"; model_cov "1238"; model_pct "17.2"; chrY rmsk exon 13565668 13566918 7410 + . gene_id "LTR25_Yq11.221c"; transcript_id "LTR25_Yq11.221c"; locus "LTR25_Yq11.221c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0174"; repClass "LTR"; repEnd "7139"; repFamily "ERV1"; repLeft "-49"; repStart "5901"; chrY rmsk exon 13566919 13567687 4370 + . gene_id "LTR25_Yq11.221c"; transcript_id "LTR25_Yq11.221c"; locus "LTR25_Yq11.221c"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0174"; repClass "LTR"; repEnd "804"; repFamily "ERV1"; repLeft "-40"; repStart "20"; ### ERVLB4_Yq11.221b ### chrY rmsk gene 13578839 13582460 . + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; category "insert*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1958"; model_cov "2450"; model_pct "42.9"; chrY rmsk exon 13578839 13579003 605 + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1958"; repClass "LTR"; repEnd "354"; repFamily "ERVL"; repLeft "-60"; repStart "180"; chrY rmsk exon 13579111 13580247 2047 + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1958"; repClass "LTR"; repEnd "1252"; repFamily "ERVL"; repLeft "-4462"; repStart "2"; chrY rmsk exon 13580247 13581258 3124 + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1958"; prev_strand "-"; repClass "LTR"; repEnd "3137"; repFamily "ERVL"; repLeft "2074"; repStart "-2577"; chrY rmsk exon 13581258 13581356 484 + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1958"; repClass "LTR"; repEnd "3378"; repFamily "ERVL"; repLeft "-2336"; repStart "3277"; chrY rmsk exon 13581426 13582460 4168 + . gene_id "ERVLB4_Yq11.221b"; transcript_id "ERVLB4_Yq11.221b"; locus "ERVLB4_Yq11.221b"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1958"; repClass "LTR"; repEnd "4541"; repFamily "ERVL"; repLeft "-1173"; repStart "3442"; ### HERVL_Yq11.221a ### chrY rmsk gene 13594554 13598482 . - . gene_id "HERVL_Yq11.221a"; transcript_id "HERVL_Yq11.221a"; locus "HERVL_Yq11.221a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1430"; model_cov "3154"; model_pct "55.8"; chrY rmsk exon 13594554 13595133 1602 - . gene_id "HERVL_Yq11.221a"; transcript_id "HERVL_Yq11.221a"; locus "HERVL_Yq11.221a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1430"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chrY rmsk exon 13595134 13596071 5125 - . gene_id "HERVL_Yq11.221a"; transcript_id "HERVL_Yq11.221a"; locus "HERVL_Yq11.221a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1430"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4718"; repStart "0"; chrY rmsk exon 13596084 13598297 10800 - . gene_id "HERVL_Yq11.221a"; transcript_id "HERVL_Yq11.221a"; locus "HERVL_Yq11.221a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1430"; repClass "LTR"; repEnd "2220"; repFamily "ERVL"; repLeft "2"; repStart "-3434"; chrY rmsk exon 13598299 13598482 584 - . gene_id "HERVL_Yq11.221a"; transcript_id "HERVL_Yq11.221a"; locus "HERVL_Yq11.221a"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1430"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "358"; repStart "0"; ### HERVL_Yq11.221b ### chrY rmsk gene 13602616 13604340 . - . gene_id "HERVL_Yq11.221b"; transcript_id "HERVL_Yq11.221b"; locus "HERVL_Yq11.221b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1431"; model_cov "1202"; model_pct "21.3"; chrY rmsk exon 13602616 13602875 1125 - . gene_id "HERVL_Yq11.221b"; transcript_id "HERVL_Yq11.221b"; locus "HERVL_Yq11.221b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1431"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "1227"; repStart "-4152"; chrY rmsk exon 13602868 13603781 4094 - . gene_id "HERVL_Yq11.221b"; transcript_id "HERVL_Yq11.221b"; locus "HERVL_Yq11.221b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1431"; repClass "LTR"; repEnd "928"; repFamily "ERVL"; repLeft "1"; repStart "-4726"; chrY rmsk exon 13603782 13604340 1376 - . gene_id "HERVL_Yq11.221b"; transcript_id "HERVL_Yq11.221b"; locus "HERVL_Yq11.221b"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1431"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "5"; repStart "0"; ### HML5_Yq11.221a ### chrY rmsk gene 13607348 13612418 . + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0151"; model_cov "5568"; model_pct "81.4"; chrY rmsk exon 13607348 13607799 2571 + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0151"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 13607800 13608770 5265 + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0151"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "-5856"; repStart "1"; chrY rmsk exon 13608763 13609668 17055 + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0151"; repClass "LTR"; repEnd "3572"; repFamily "ERVK"; repLeft "-3265"; repStart "2248"; chrY rmsk exon 13609729 13611957 17055 + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0151"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3573"; chrY rmsk exon 13611958 13612418 2794 + . gene_id "HML5_Yq11.221a"; transcript_id "HML5_Yq11.221a"; locus "HML5_Yq11.221a"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0151"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML1_Yq11.221a ### chrY rmsk gene 13612616 13618615 . - . gene_id "HML1_Yq11.221a"; transcript_id "HML1_Yq11.221a"; locus "HML1_Yq11.221a"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0134"; model_cov "5320"; model_pct "87.3"; chrY rmsk exon 13612616 13613255 3159 - . gene_id "HML1_Yq11.221a"; transcript_id "HML1_Yq11.221a"; locus "HML1_Yq11.221a"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0134"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "5"; repStart "0"; chrY rmsk exon 13613265 13615000 3269 - . gene_id "HML1_Yq11.221a"; transcript_id "HML1_Yq11.221a"; locus "HML1_Yq11.221a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0134"; repClass "LTR"; repEnd "6056"; repFamily "ERVK"; repLeft "4294"; repStart "-40"; chrY rmsk exon 13615043 13618092 22536 - . gene_id "HML1_Yq11.221a"; transcript_id "HML1_Yq11.221a"; locus "HML1_Yq11.221a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0134"; repClass "LTR"; repEnd "5143"; repFamily "ERVK"; repLeft "2106"; repStart "-953"; chrY rmsk exon 13618094 13618615 3588 - . gene_id "HML1_Yq11.221a"; transcript_id "HML1_Yq11.221a"; locus "HML1_Yq11.221a"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0134"; repClass "LTR"; repEnd "1584"; repFamily "ERVK"; repLeft "1063"; repStart "-4512"; ### MER4B_Yq11.221b ### chrY rmsk gene 13624238 13627352 . + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; category "prototype"; intModel "MER4B-int"; locid "MER4B-int_0568"; model_cov "1703"; model_pct "25.2"; chrY rmsk exon 13624238 13624765 2805 + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; repName "MER4D0"; geneRegion "ltr"; locid "MER4B-int_0568"; repClass "LTR"; repEnd "622"; repFamily "ERV1"; repLeft "-250"; repStart "95"; chrY rmsk exon 13624770 13626279 9043 + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0568"; repClass "LTR"; repEnd "6200"; repFamily "ERV1"; repLeft "-558"; repStart "4659"; chrY rmsk exon 13626285 13626448 1013 + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0568"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "0"; repStart "6596"; chrY rmsk exon 13626449 13626646 2469 + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0568"; repClass "LTR"; repEnd "218"; repFamily "ERV1"; repLeft "-392"; repStart "1"; chrY rmsk exon 13626955 13627352 2469 + . gene_id "MER4B_Yq11.221b"; transcript_id "MER4B_Yq11.221b"; locus "MER4B_Yq11.221b"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0568"; repClass "LTR"; repEnd "601"; repFamily "ERV1"; repLeft "-9"; repStart "-71"; ### HERV9_Yq11.221b ### chrY rmsk gene 13627364 13637612 . + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0203"; model_cov "8374"; model_pct "99.3"; chrY rmsk exon 13627364 13628090 4951 + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0203"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 13628091 13628337 965 + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0203"; repClass "LTR"; repEnd "665"; repFamily "ERV1"; repLeft "-2"; repStart "330"; chrY rmsk exon 13628338 13629741 61590 + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0203"; repClass "LTR"; repEnd "1467"; repFamily "ERV1"; repLeft "-6969"; repStart "55"; chrY rmsk exon 13629858 13636769 61590 + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0203"; repClass "LTR"; repEnd "8430"; repFamily "ERV1"; repLeft "-6"; repStart "1468"; chrY rmsk exon 13636775 13637612 5187 + . gene_id "HERV9_Yq11.221b"; transcript_id "HERV9_Yq11.221b"; locus "HERV9_Yq11.221b"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0203"; repClass "LTR"; repEnd "822"; repFamily "ERV1"; repLeft "-4"; repStart "1"; ### HERVL32_Yq11.221 ### chrY rmsk gene 13653042 13654649 . - . gene_id "HERVL32_Yq11.221"; transcript_id "HERVL32_Yq11.221"; locus "HERVL32_Yq11.221"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0056"; model_cov "1292"; model_pct "37.8"; chrY rmsk exon 13653042 13654307 3442 - . gene_id "HERVL32_Yq11.221"; transcript_id "HERVL32_Yq11.221"; locus "HERVL32_Yq11.221"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0056"; repClass "LTR"; repEnd "1293"; repFamily "ERVL"; repLeft "1"; repStart "-2125"; chrY rmsk exon 13654320 13654649 1376 - . gene_id "HERVL32_Yq11.221"; transcript_id "HERVL32_Yq11.221"; locus "HERVL32_Yq11.221"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0056"; repClass "LTR"; repEnd "446"; repFamily "ERVL"; repLeft "99"; repStart "-11"; ### MER4B_Yq11.221c ### chrY rmsk gene 13656004 13656845 . - . gene_id "MER4B_Yq11.221c"; transcript_id "MER4B_Yq11.221c"; locus "MER4B_Yq11.221c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0569"; model_cov "822"; model_pct "12.2"; chrY rmsk exon 13656004 13656666 3916 - . gene_id "MER4B_Yq11.221c"; transcript_id "MER4B_Yq11.221c"; locus "MER4B_Yq11.221c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0569"; repClass "LTR"; repEnd "5367"; repFamily "ERV1"; repLeft "4687"; repStart "-1391"; chrY rmsk exon 13656701 13656845 876 - . gene_id "MER4B_Yq11.221c"; transcript_id "MER4B_Yq11.221c"; locus "MER4B_Yq11.221c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0569"; repClass "LTR"; repEnd "4701"; repFamily "ERV1"; repLeft "4559"; repStart "-2057"; ### HERV9_Yq11.221c ### chrY rmsk gene 13656847 13666238 . - . gene_id "HERV9_Yq11.221c"; transcript_id "HERV9_Yq11.221c"; locus "HERV9_Yq11.221c"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0204"; model_cov "8376"; model_pct "99.3"; chrY rmsk exon 13656847 13657284 3056 - . gene_id "HERV9_Yq11.221c"; transcript_id "HERV9_Yq11.221c"; locus "HERV9_Yq11.221c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0204"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "46"; repStart "0"; chrY rmsk exon 13657586 13657636 3056 - . gene_id "HERV9_Yq11.221c"; transcript_id "HERV9_Yq11.221c"; locus "HERV9_Yq11.221c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0204"; repClass "LTR"; repEnd "45"; repFamily "ERV1"; repLeft "1"; repStart "-474"; chrY rmsk exon 13657642 13665791 35768 - . gene_id "HERV9_Yq11.221c"; transcript_id "HERV9_Yq11.221c"; locus "HERV9_Yq11.221c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0204"; repClass "LTR"; repEnd "8431"; repFamily "ERV1"; repLeft "55"; repStart "-5"; chrY rmsk exon 13665812 13666238 2872 - . gene_id "HERV9_Yq11.221c"; transcript_id "HERV9_Yq11.221c"; locus "HERV9_Yq11.221c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0204"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Yq11.221d ### chrY rmsk gene 13666240 13670378 . - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0570"; model_cov "2997"; model_pct "44.3"; chrY rmsk exon 13666240 13666612 7251 - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0570"; repClass "LTR"; repEnd "4560"; repFamily "ERV1"; repLeft "4202"; repStart "-2198"; chrY rmsk exon 13666901 13667964 9470 - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0570"; repClass "LTR"; repEnd "4201"; repFamily "ERV1"; repLeft "3097"; repStart "-2557"; chrY rmsk exon 13668046 13668681 9470 - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0570"; repClass "LTR"; repEnd "3096"; repFamily "ERV1"; repLeft "2454"; repStart "-3662"; chrY rmsk exon 13669269 13669337 9470 - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0570"; repClass "LTR"; repEnd "2453"; repFamily "ERV1"; repLeft "2389"; repStart "-4305"; chrY rmsk exon 13669576 13670378 7948 - . gene_id "MER4B_Yq11.221d"; transcript_id "MER4B_Yq11.221d"; locus "MER4B_Yq11.221d"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0570"; repClass "LTR"; repEnd "2379"; repFamily "ERV1"; repLeft "1550"; repStart "-4379"; ### MER4B_Yq11.221e ### chrY rmsk gene 13670474 13671779 . - . gene_id "MER4B_Yq11.221e"; transcript_id "MER4B_Yq11.221e"; locus "MER4B_Yq11.221e"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0571"; model_cov "1351"; model_pct "20.0"; chrY rmsk exon 13670474 13671779 7948 - . gene_id "MER4B_Yq11.221e"; transcript_id "MER4B_Yq11.221e"; locus "MER4B_Yq11.221e"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0571"; repClass "LTR"; repEnd "2379"; repFamily "ERV1"; repLeft "1028"; repStart "-4379"; ### HERV9_Yq11.221d ### chrY rmsk gene 13887679 13897994 . + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0205"; model_cov "7749"; model_pct "91.9"; chrY rmsk exon 13887679 13889346 9681 + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0205"; repClass "LTR"; repEnd "1577"; repFamily "ERV1"; repLeft "-2"; repStart "3"; chrY rmsk exon 13889349 13889401 358 + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0205"; repClass "LTR"; repEnd "53"; repFamily "ERV1"; repLeft "-8383"; repStart "1"; chrY rmsk exon 13889410 13895921 47906 + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0205"; repClass "LTR"; repEnd "6573"; repFamily "ERV1"; repLeft "-1863"; repStart "17"; chrY rmsk exon 13895920 13897055 8394 + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0205"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7295"; chrY rmsk exon 13897057 13897994 5308 + . gene_id "HERV9_Yq11.221d"; transcript_id "HERV9_Yq11.221d"; locus "HERV9_Yq11.221d"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0205"; repClass "LTR"; repEnd "1157"; repFamily "ERV1"; repLeft "-422"; repStart "4"; ### HERV9_Yq11.221e ### chrY rmsk gene 14158236 14167807 . + . gene_id "HERV9_Yq11.221e"; transcript_id "HERV9_Yq11.221e"; locus "HERV9_Yq11.221e"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0206"; model_cov "8380"; model_pct "99.3"; chrY rmsk exon 14158236 14158775 2987 + . gene_id "HERV9_Yq11.221e"; transcript_id "HERV9_Yq11.221e"; locus "HERV9_Yq11.221e"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0206"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 14158796 14165189 57270 + . gene_id "HERV9_Yq11.221e"; transcript_id "HERV9_Yq11.221e"; locus "HERV9_Yq11.221e"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0206"; repClass "LTR"; repEnd "6510"; repFamily "ERV1"; repLeft "-1926"; repStart "55"; chrY rmsk exon 14165484 14167389 57270 + . gene_id "HERV9_Yq11.221e"; transcript_id "HERV9_Yq11.221e"; locus "HERV9_Yq11.221e"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0206"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6511"; chrY rmsk exon 14167390 14167807 2441 + . gene_id "HERV9_Yq11.221e"; transcript_id "HERV9_Yq11.221e"; locus "HERV9_Yq11.221e"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0206"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-1"; repStart "1"; ### ERVLE_Yq11.221a ### chrY rmsk gene 14264918 14266566 . - . gene_id "ERVLE_Yq11.221a"; transcript_id "ERVLE_Yq11.221a"; locus "ERVLE_Yq11.221a"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3788"; model_cov "1126"; model_pct "19.9"; chrY rmsk exon 14264918 14265200 628 - . gene_id "ERVLE_Yq11.221a"; transcript_id "ERVLE_Yq11.221a"; locus "ERVLE_Yq11.221a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3788"; repClass "LTR"; repEnd "2904"; repFamily "ERVL"; repLeft "2617"; repStart "-2763"; chrY rmsk exon 14265241 14265524 402 - . gene_id "ERVLE_Yq11.221a"; transcript_id "ERVLE_Yq11.221a"; locus "ERVLE_Yq11.221a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3788"; repClass "LTR"; repEnd "2539"; repFamily "ERVL"; repLeft "2233"; repStart "-3128"; chrY rmsk exon 14265816 14265931 338 - . gene_id "ERVLE_Yq11.221a"; transcript_id "ERVLE_Yq11.221a"; locus "ERVLE_Yq11.221a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3788"; repClass "LTR"; repEnd "2502"; repFamily "ERVL"; repLeft "2387"; repStart "-3165"; chrY rmsk exon 14266152 14266566 295 - . gene_id "ERVLE_Yq11.221a"; transcript_id "ERVLE_Yq11.221a"; locus "ERVLE_Yq11.221a"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3788"; repClass "LTR"; repEnd "2037"; repFamily "ERVL"; repLeft "1619"; repStart "-3630"; ### HERV9_Yq11.221f ### chrY rmsk gene 14312854 14315843 . + . gene_id "HERV9_Yq11.221f"; transcript_id "HERV9_Yq11.221f"; locus "HERV9_Yq11.221f"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0207"; model_cov "1446"; model_pct "17.1"; chrY rmsk exon 14312854 14314308 10872 + . gene_id "HERV9_Yq11.221f"; transcript_id "HERV9_Yq11.221f"; locus "HERV9_Yq11.221f"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0207"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "6990"; chrY rmsk exon 14314309 14315843 11502 + . gene_id "HERV9_Yq11.221f"; transcript_id "HERV9_Yq11.221f"; locus "HERV9_Yq11.221f"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0207"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HERVW_Yq11.221 ### chrY rmsk gene 14341042 14344697 . - . gene_id "HERVW_Yq11.221"; transcript_id "HERVW_Yq11.221"; locus "HERVW_Yq11.221"; category "internal"; intModel "HERV17-int"; locid "HERV17-int_0325"; model_cov "3451"; model_pct "40.0"; chrY rmsk exon 14341042 14342233 4102 - . gene_id "HERVW_Yq11.221"; transcript_id "HERVW_Yq11.221"; locus "HERVW_Yq11.221"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0325"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "7426"; repStart "0"; chrY rmsk exon 14342244 14343925 7792 - . gene_id "HERVW_Yq11.221"; transcript_id "HERVW_Yq11.221"; locus "HERVW_Yq11.221"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0325"; repClass "LTR"; repEnd "3965"; repFamily "ERV1"; repLeft "2273"; repStart "-4661"; chrY rmsk exon 14344148 14344697 1760 - . gene_id "HERVW_Yq11.221"; transcript_id "HERVW_Yq11.221"; locus "HERVW_Yq11.221"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0325"; repClass "LTR"; repEnd "929"; repFamily "ERV1"; repLeft "370"; repStart "-7697"; ### HERV9_Yq11.221g ### chrY rmsk gene 14350505 14355261 . - . gene_id "HERV9_Yq11.221g"; transcript_id "HERV9_Yq11.221g"; locus "HERV9_Yq11.221g"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0208"; model_cov "4694"; model_pct "55.6"; chrY rmsk exon 14350505 14350576 509 - . gene_id "HERV9_Yq11.221g"; transcript_id "HERV9_Yq11.221g"; locus "HERV9_Yq11.221g"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0208"; repClass "LTR"; repEnd "72"; repFamily "ERV1"; repLeft "1"; repStart "-447"; chrY rmsk exon 14350578 14351780 7964 - . gene_id "HERV9_Yq11.221g"; transcript_id "HERV9_Yq11.221g"; locus "HERV9_Yq11.221g"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0208"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "7221"; repStart "-1"; chrY rmsk exon 14351778 14355261 23387 - . gene_id "HERV9_Yq11.221g"; transcript_id "HERV9_Yq11.221g"; locus "HERV9_Yq11.221g"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0208"; repClass "LTR"; repEnd "5731"; repFamily "ERV1"; repLeft "2251"; repStart "-2705"; ### HERVH_Yq11.221b ### chrY rmsk gene 14355261 14360015 . - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1308"; model_cov "4360"; model_pct "56.5"; chrY rmsk exon 14355261 14355395 721 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "5746"; repFamily "ERV1"; repLeft "5613"; repStart "-1967"; chrY rmsk exon 14355409 14356641 5363 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3982"; repStart "-2564"; chrY rmsk exon 14356653 14356884 1057 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "3735"; repFamily "ERV1"; repLeft "3504"; repStart "-3978"; chrY rmsk exon 14356882 14357773 5166 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "2101"; repStart "-4728"; chrY rmsk exon 14357774 14359632 6799 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "1948"; repFamily "ERV1"; repLeft "3"; repStart "-5765"; chrY rmsk exon 14359635 14360015 2166 - . gene_id "HERVH_Yq11.221b"; transcript_id "HERVH_Yq11.221b"; locus "HERVH_Yq11.221b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1308"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVK11_Yq11.221 ### chrY rmsk gene 14374888 14381445 . - . gene_id "HERVK11_Yq11.221"; transcript_id "HERVK11_Yq11.221"; locus "HERVK11_Yq11.221"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0115"; model_cov "5607"; model_pct "70.5"; chrY rmsk exon 14374888 14377622 19494 - . gene_id "HERVK11_Yq11.221"; transcript_id "HERVK11_Yq11.221"; locus "HERVK11_Yq11.221"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0115"; repClass "LTR"; repEnd "7842"; repFamily "ERVK"; repLeft "5100"; repStart "-111"; chrY rmsk exon 14377613 14380508 19706 - . gene_id "HERVK11_Yq11.221"; transcript_id "HERVK11_Yq11.221"; locus "HERVK11_Yq11.221"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0115"; repClass "LTR"; repEnd "2871"; repFamily "ERVK"; repLeft "6"; repStart "-5082"; chrY rmsk exon 14380516 14381445 3176 - . gene_id "HERVK11_Yq11.221"; transcript_id "HERVK11_Yq11.221"; locus "HERVK11_Yq11.221"; repName "MER11A"; geneRegion "ltr"; locid "HERVK11-int_0115"; repClass "LTR"; repEnd "1266"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV9_Yq11.221h ### chrY rmsk gene 14814104 14821742 . - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0209"; model_cov "7072"; model_pct "83.8"; chrY rmsk exon 14814104 14814164 386 - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0209"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "1071"; repStart "-123"; chrY rmsk exon 14814158 14814197 284 - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0209"; repClass "LTR"; repEnd "46"; repFamily "ERV1"; repLeft "7"; repStart "-473"; chrY rmsk exon 14814215 14815745 10409 - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0209"; repClass "LTR"; repEnd "8432"; repFamily "ERV1"; repLeft "6911"; repStart "-4"; chrY rmsk exon 14815744 14821139 29433 - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0209"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "35"; repStart "-2850"; chrY rmsk exon 14821165 14821742 3283 - . gene_id "HERV9_Yq11.221h"; transcript_id "HERV9_Yq11.221h"; locus "HERV9_Yq11.221h"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0209"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML5_Yq11.221b ### chrY rmsk gene 14868523 14874954 . - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0152"; model_cov "5410"; model_pct "79.1"; chrY rmsk exon 14868523 14869025 2461 - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0152"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "8"; repStart "0"; chrY rmsk exon 14869029 14873496 29355 - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0152"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2325"; repStart "0"; chrY rmsk exon 14873490 14874085 3630 - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0152"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "312"; repStart "-5932"; chrY rmsk exon 14874170 14874457 1847 - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0152"; repClass "LTR"; repEnd "306"; repFamily "ERVK"; repLeft "1"; repStart "-6531"; chrY rmsk exon 14874458 14874954 2489 - . gene_id "HML5_Yq11.221b"; transcript_id "HML5_Yq11.221b"; locus "HML5_Yq11.221b"; repName "LTR22E"; geneRegion "ltr"; locid "HERVK22-int_0152"; repClass "LTR"; repEnd "507"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL_Yq11.221c ### chrY rmsk gene 14975188 14981941 . - . gene_id "HERVL_Yq11.221c"; transcript_id "HERVL_Yq11.221c"; locus "HERVL_Yq11.221c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1432"; model_cov "5651"; model_pct "99.9"; chrY rmsk exon 14975188 14975575 2654 - . gene_id "HERVL_Yq11.221c"; transcript_id "HERVL_Yq11.221c"; locus "HERVL_Yq11.221c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1432"; repClass "LTR"; repEnd "390"; repFamily "ERVL"; repLeft "1"; repStart "-54"; chrY rmsk exon 14975576 14978959 36264 - . gene_id "HERVL_Yq11.221c"; transcript_id "HERVL_Yq11.221c"; locus "HERVL_Yq11.221c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1432"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "2267"; repStart "0"; chrY rmsk exon 14978989 14981260 36264 - . gene_id "HERVL_Yq11.221c"; transcript_id "HERVL_Yq11.221c"; locus "HERVL_Yq11.221c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1432"; repClass "LTR"; repEnd "2266"; repFamily "ERVL"; repLeft "2"; repStart "-3388"; chrY rmsk exon 14981563 14981941 2615 - . gene_id "HERVL_Yq11.221c"; transcript_id "HERVL_Yq11.221c"; locus "HERVL_Yq11.221c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1432"; repClass "LTR"; repEnd "381"; repFamily "ERVL"; repLeft "1"; repStart "-63"; ### HERV9_Yq11.221i ### chrY rmsk gene 14983203 14992582 . + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0210"; model_cov "8223"; model_pct "97.5"; chrY rmsk exon 14983203 14983716 2968 + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0210"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "6"; chrY rmsk exon 14983737 14983851 29078 + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0210"; repClass "LTR"; repEnd "169"; repFamily "ERV1"; repLeft "-8267"; repStart "55"; chrY rmsk exon 14984147 14988305 29078 + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0210"; repClass "LTR"; repEnd "4413"; repFamily "ERV1"; repLeft "-4023"; repStart "170"; chrY rmsk exon 14988304 14992174 26851 + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0210"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "4570"; chrY rmsk exon 14992175 14992582 2336 + . gene_id "HERV9_Yq11.221i"; transcript_id "HERV9_Yq11.221i"; locus "HERV9_Yq11.221i"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0210"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_Yq11.221b ### chrY rmsk gene 15023203 15023738 . + . gene_id "ERVLE_Yq11.221b"; transcript_id "ERVLE_Yq11.221b"; locus "ERVLE_Yq11.221b"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3789"; model_cov "620"; model_pct "10.9"; chrY rmsk exon 15023203 15023738 468 + . gene_id "ERVLE_Yq11.221b"; transcript_id "ERVLE_Yq11.221b"; locus "ERVLE_Yq11.221b"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3789"; repClass "LTR"; repEnd "5046"; repFamily "ERVL"; repLeft "-621"; repStart "4426"; ### HERVH_Yq11.221c ### chrY rmsk gene 15098843 15103998 . - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1309"; model_cov "4358"; model_pct "56.5"; chrY rmsk exon 15098843 15099220 1570 - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1309"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 15099221 15099625 2524 - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1309"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7310"; repStart "0"; chrY rmsk exon 15099627 15100678 6272 - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1309"; repClass "LTR"; repEnd "6893"; repFamily "ERV1"; repLeft "5835"; repStart "-820"; chrY rmsk exon 15100686 15103623 6960 - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1309"; repClass "LTR"; repEnd "2898"; repFamily "ERV1"; repLeft "1"; repStart "-4815"; chrY rmsk exon 15103624 15103998 1473 - . gene_id "HERVH_Yq11.221c"; transcript_id "HERVH_Yq11.221c"; locus "HERVH_Yq11.221c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1309"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### HERVEA_Yq11.221b ### chrY rmsk gene 15254704 15259982 . + . gene_id "HERVEA_Yq11.221b"; transcript_id "HERVEA_Yq11.221b"; locus "HERVEA_Yq11.221b"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0120"; model_cov "4842"; model_pct "61.7"; chrY rmsk exon 15254704 15255155 3188 + . gene_id "HERVEA_Yq11.221b"; transcript_id "HERVEA_Yq11.221b"; locus "HERVEA_Yq11.221b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0120"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 15255157 15255312 1070 + . gene_id "HERVEA_Yq11.221b"; transcript_id "HERVEA_Yq11.221b"; locus "HERVEA_Yq11.221b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0120"; repClass "LTR"; repEnd "1107"; repFamily "ERV1"; repLeft "-6740"; repStart "952"; chrY rmsk exon 15255313 15256214 6934 + . gene_id "HERVEA_Yq11.221b"; transcript_id "HERVEA_Yq11.221b"; locus "HERVEA_Yq11.221b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0120"; repClass "LTR"; repEnd "1362"; repFamily "ERV1"; repLeft "-6485"; repStart "458"; chrY rmsk exon 15256212 15259982 29149 + . gene_id "HERVEA_Yq11.221b"; transcript_id "HERVEA_Yq11.221b"; locus "HERVEA_Yq11.221b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0120"; repClass "LTR"; repEnd "5255"; repFamily "ERV1"; repLeft "-2592"; repStart "1472"; ### HERVEA_Yq11.221c ### chrY rmsk gene 15268369 15270534 . + . gene_id "HERVEA_Yq11.221c"; transcript_id "HERVEA_Yq11.221c"; locus "HERVEA_Yq11.221c"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0121"; model_cov "1703"; model_pct "21.7"; chrY rmsk exon 15268369 15269327 7731 + . gene_id "HERVEA_Yq11.221c"; transcript_id "HERVEA_Yq11.221c"; locus "HERVEA_Yq11.221c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0121"; repClass "LTR"; repEnd "6210"; repFamily "ERV1"; repLeft "-1637"; repStart "5252"; chrY rmsk exon 15269331 15270076 5892 + . gene_id "HERVEA_Yq11.221c"; transcript_id "HERVEA_Yq11.221c"; locus "HERVEA_Yq11.221c"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0121"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "7102"; chrY rmsk exon 15270077 15270534 3423 + . gene_id "HERVEA_Yq11.221c"; transcript_id "HERVEA_Yq11.221c"; locus "HERVEA_Yq11.221c"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0121"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML1_Yq11.221b ### chrY rmsk gene 15400320 15405096 . + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0135"; model_cov "3493"; model_pct "57.3"; chrY rmsk exon 15400320 15400732 1881 + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0135"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 15400733 15402263 11342 + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0135"; repClass "LTR"; repEnd "1552"; repFamily "ERVK"; repLeft "-4544"; repStart "1"; chrY rmsk exon 15402267 15403427 13964 + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0135"; repClass "LTR"; repEnd "5145"; repFamily "ERVK"; repLeft "-951"; repStart "3974"; chrY rmsk exon 15403725 15404501 13964 + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0135"; repClass "LTR"; repEnd "5917"; repFamily "ERVK"; repLeft "-179"; repStart "5146"; chrY rmsk exon 15404688 15405096 1913 + . gene_id "HML1_Yq11.221b"; transcript_id "HML1_Yq11.221b"; locus "HML1_Yq11.221b"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0135"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_Yq11.221j ### chrY rmsk gene 15432532 15434541 . + . gene_id "HERV9_Yq11.221j"; transcript_id "HERV9_Yq11.221j"; locus "HERV9_Yq11.221j"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0211"; model_cov "1129"; model_pct "13.4"; chrY rmsk exon 15432532 15433661 9243 + . gene_id "HERV9_Yq11.221j"; transcript_id "HERV9_Yq11.221j"; locus "HERV9_Yq11.221j"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0211"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7307"; chrY rmsk exon 15433662 15434324 3752 + . gene_id "HERV9_Yq11.221j"; transcript_id "HERV9_Yq11.221j"; locus "HERV9_Yq11.221j"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0211"; repClass "LTR"; repEnd "707"; repFamily "ERV1"; repLeft "-872"; repStart "3"; chrY rmsk exon 15434306 15434541 1897 + . gene_id "HERV9_Yq11.221j"; transcript_id "HERV9_Yq11.221j"; locus "HERV9_Yq11.221j"; repName "LTR12C"; geneRegion "ltr"; locid "HERV9-int_0211"; repClass "LTR"; repEnd "1579"; repFamily "ERV1"; repLeft "0"; repStart "1343"; ### MER4_Yq11.221f ### chrY rmsk gene 15508950 15511930 . - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0992"; model_cov "1484"; model_pct "22.5"; chrY rmsk exon 15508950 15509335 1705 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0992"; repClass "LTR"; repEnd "3119"; repFamily "ERV1"; repLeft "2732"; repStart "-3479"; chrY rmsk exon 15509584 15510074 4121 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0992"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "1981"; repStart "-4103"; chrY rmsk exon 15510520 15510834 4121 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0992"; repClass "LTR"; repEnd "1980"; repFamily "ERV1"; repLeft "1678"; repStart "-4618"; chrY rmsk exon 15510881 15511111 1208 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0992"; repClass "LTR"; repEnd "1226"; repFamily "ERV1"; repLeft "994"; repStart "-5372"; chrY rmsk exon 15511111 15511160 316 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0992"; repClass "LTR"; repEnd "886"; repFamily "ERV1"; repLeft "837"; repStart "-5712"; chrY rmsk exon 15511578 15511930 1642 - . gene_id "MER4_Yq11.221f"; transcript_id "MER4_Yq11.221f"; locus "MER4_Yq11.221f"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0992"; repClass "LTR"; repEnd "466"; repFamily "ERV1"; repLeft "94"; repStart "-6"; ### HERVH_Yq11.221d ### chrY rmsk gene 15512069 15518203 . + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1310"; model_cov "4903"; model_pct "63.6"; chrY rmsk exon 15512069 15512312 943 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "327"; repFamily "ERV1"; repLeft "-123"; repStart "1"; chrY rmsk exon 15512314 15512718 2550 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 15512721 15515778 18881 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "2985"; repFamily "ERV1"; repLeft "-4728"; repStart "1"; chrY rmsk exon 15515775 15515923 740 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chrY rmsk exon 15515914 15516414 3234 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "3992"; repFamily "ERV1"; repLeft "-3721"; repStart "3492"; chrY rmsk exon 15516418 15517079 4186 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chrY rmsk exon 15517081 15517295 1174 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chrY rmsk exon 15517296 15517672 2174 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chrY rmsk exon 15517673 15518073 2385 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chrY rmsk exon 15518078 15518203 785 + . gene_id "HERVH_Yq11.221d"; transcript_id "HERVH_Yq11.221d"; locus "HERVH_Yq11.221d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1310"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "326"; ### HERV9_Yq11.221k ### chrY rmsk gene 15771051 15772125 . + . gene_id "HERV9_Yq11.221k"; transcript_id "HERV9_Yq11.221k"; locus "HERV9_Yq11.221k"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0214"; model_cov "1100"; model_pct "13.0"; chrY rmsk exon 15771051 15772125 7346 + . gene_id "HERV9_Yq11.221k"; transcript_id "HERV9_Yq11.221k"; locus "HERV9_Yq11.221k"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0214"; repClass "LTR"; repEnd "2251"; repFamily "ERV1"; repLeft "-6185"; repStart "1151"; ### HERVK11D_Yq11.221 ### chrY rmsk gene 15973346 15982688 . - . gene_id "HERVK11D_Yq11.221"; transcript_id "HERVK11D_Yq11.221"; locus "HERVK11D_Yq11.221"; category "prototype"; intModel "HERVK11D-int"; locid "HERVK11D-int_0030"; model_cov "7559"; model_pct "97.5"; chrY rmsk exon 15973346 15974248 7324 - . gene_id "HERVK11D_Yq11.221"; transcript_id "HERVK11D_Yq11.221"; locus "HERVK11D_Yq11.221"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0030"; repClass "LTR"; repEnd "896"; repFamily "ERVK"; repLeft "2"; repStart "-1"; chrY rmsk exon 15974250 15975198 7326 - . gene_id "HERVK11D_Yq11.221"; transcript_id "HERVK11D_Yq11.221"; locus "HERVK11D_Yq11.221"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0030"; repClass "LTR"; repEnd "7752"; repFamily "ERVK"; repLeft "6783"; repStart "0"; chrY rmsk exon 15975189 15981792 54585 - . gene_id "HERVK11D_Yq11.221"; transcript_id "HERVK11D_Yq11.221"; locus "HERVK11D_Yq11.221"; repName "HERVK11D-int"; geneRegion "internal"; locid "HERVK11D-int_0030"; repClass "LTR"; repEnd "6591"; repFamily "ERVK"; repLeft "1"; repStart "-1161"; chrY rmsk exon 15981793 15982688 7387 - . gene_id "HERVK11D_Yq11.221"; transcript_id "HERVK11D_Yq11.221"; locus "HERVK11D_Yq11.221"; repName "MER11D"; geneRegion "ltr"; locid "HERVK11D-int_0030"; repClass "LTR"; repEnd "897"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR19_Yq11.221c ### chrY rmsk gene 16059283 16064617 . - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0079"; model_cov "4824"; model_pct "86.4"; chrY rmsk exon 16059283 16059511 987 - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0079"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "1"; repStart "-231"; chrY rmsk exon 16059512 16062548 18942 - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0079"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "2455"; repStart "0"; chrY rmsk exon 16062676 16062763 569 - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0079"; repClass "LTR"; repEnd "2257"; repFamily "ERV1"; repLeft "2170"; repStart "-3329"; chrY rmsk exon 16062821 16064377 9170 - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0079"; repClass "LTR"; repEnd "1825"; repFamily "ERV1"; repLeft "219"; repStart "-3761"; chrY rmsk exon 16064378 16064617 1252 - . gene_id "LTR19_Yq11.221c"; transcript_id "LTR19_Yq11.221c"; locus "LTR19_Yq11.221c"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0079"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "1"; repStart "-229"; ### HERV9_Yq11.221l ### chrY rmsk gene 16071030 16080880 . + . gene_id "HERV9_Yq11.221l"; transcript_id "HERV9_Yq11.221l"; locus "HERV9_Yq11.221l"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0215"; model_cov "8435"; model_pct "100.0"; chrY rmsk exon 16071030 16071705 4633 + . gene_id "HERV9_Yq11.221l"; transcript_id "HERV9_Yq11.221l"; locus "HERV9_Yq11.221l"; repName "LTR12_"; geneRegion "ltr"; locid "HERV9-int_0215"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 16071706 16080086 61239 + . gene_id "HERV9_Yq11.221l"; transcript_id "HERV9_Yq11.221l"; locus "HERV9_Yq11.221l"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0215"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 16080087 16080880 4807 + . gene_id "HERV9_Yq11.221l"; transcript_id "HERV9_Yq11.221l"; locus "HERV9_Yq11.221l"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0215"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "370"; ### LTR19_Yq11.221d ### chrY rmsk gene 16080882 16083152 . + . gene_id "LTR19_Yq11.221d"; transcript_id "LTR19_Yq11.221d"; locus "LTR19_Yq11.221d"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0081"; model_cov "2268"; model_pct "40.6"; chrY rmsk exon 16080882 16082602 7108 + . gene_id "LTR19_Yq11.221d"; transcript_id "LTR19_Yq11.221d"; locus "LTR19_Yq11.221d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0081"; repClass "LTR"; repEnd "2277"; repFamily "ERV1"; repLeft "-3309"; repStart "481"; chrY rmsk exon 16082628 16083051 2702 + . gene_id "LTR19_Yq11.221d"; transcript_id "LTR19_Yq11.221d"; locus "LTR19_Yq11.221d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0081"; repClass "LTR"; repEnd "2965"; repFamily "ERV1"; repLeft "-2621"; repStart "2493"; chrY rmsk exon 16083052 16083152 604 + . gene_id "LTR19_Yq11.221d"; transcript_id "LTR19_Yq11.221d"; locus "LTR19_Yq11.221d"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0081"; repClass "LTR"; repEnd "431"; repFamily "ERV1"; repLeft "-55"; repStart "323"; ### LTR19_Yq11.221e ### chrY rmsk gene 16127599 16133739 . + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; category "prototype"; intModel "LTR19-int"; locid "LTR19-int_0082"; model_cov "5252"; model_pct "94.0"; chrY rmsk exon 16127599 16128079 1992 + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0082"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 16128080 16128199 636 + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0082"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-5440"; repStart "1"; chrY rmsk exon 16128289 16129181 4922 + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0082"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "-4302"; repStart "325"; chrY rmsk exon 16129179 16133256 26952 + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0082"; repClass "LTR"; repEnd "5584"; repFamily "ERV1"; repLeft "-2"; repStart "1436"; chrY rmsk exon 16133259 16133739 1894 + . gene_id "LTR19_Yq11.221e"; transcript_id "LTR19_Yq11.221e"; locus "LTR19_Yq11.221e"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0082"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERV30_Yq11.221a ### chrY rmsk gene 16163843 16173034 . - . gene_id "HERV30_Yq11.221a"; transcript_id "HERV30_Yq11.221a"; locus "HERV30_Yq11.221a"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0027"; model_cov "7987"; model_pct "96.7"; chrY rmsk exon 16163843 16164550 4353 - . gene_id "HERV30_Yq11.221a"; transcript_id "HERV30_Yq11.221a"; locus "HERV30_Yq11.221a"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0027"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 16164551 16165733 9324 - . gene_id "HERV30_Yq11.221a"; transcript_id "HERV30_Yq11.221a"; locus "HERV30_Yq11.221a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0027"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7064"; repStart "0"; chrY rmsk exon 16165736 16172409 28741 - . gene_id "HERV30_Yq11.221a"; transcript_id "HERV30_Yq11.221a"; locus "HERV30_Yq11.221a"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0027"; repClass "LTR"; repEnd "6795"; repFamily "ERV1"; repLeft "1"; repStart "-1462"; chrY rmsk exon 16172410 16173034 2845 - . gene_id "HERV30_Yq11.221a"; transcript_id "HERV30_Yq11.221a"; locus "HERV30_Yq11.221a"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0027"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "6"; repStart "0"; ### HERVS71_Yq11.221a ### chrY rmsk gene 16197437 16204160 . + . gene_id "HERVS71_Yq11.221a"; transcript_id "HERVS71_Yq11.221a"; locus "HERVS71_Yq11.221a"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0057"; model_cov "7846"; model_pct "87.4"; chrY rmsk exon 16197437 16197989 3922 + . gene_id "HERVS71_Yq11.221a"; transcript_id "HERVS71_Yq11.221a"; locus "HERVS71_Yq11.221a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0057"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 16197992 16204088 20643 + . gene_id "HERVS71_Yq11.221a"; transcript_id "HERVS71_Yq11.221a"; locus "HERVS71_Yq11.221a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0057"; repClass "LTR"; repEnd "7850"; repFamily "ERV1"; repLeft "-1128"; repStart "4"; chrY rmsk exon 16204089 16204160 457 + . gene_id "HERVS71_Yq11.221a"; transcript_id "HERVS71_Yq11.221a"; locus "HERVS71_Yq11.221a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0057"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "493"; ### HERV9_Yq11.221m ### chrY rmsk gene 16273306 16277432 . + . gene_id "HERV9_Yq11.221m"; transcript_id "HERV9_Yq11.221m"; locus "HERV9_Yq11.221m"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0216"; model_cov "3651"; model_pct "43.3"; chrY rmsk exon 16273306 16276958 24427 + . gene_id "HERV9_Yq11.221m"; transcript_id "HERV9_Yq11.221m"; locus "HERV9_Yq11.221m"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0216"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "4785"; chrY rmsk exon 16276959 16277432 2205 + . gene_id "HERV9_Yq11.221m"; transcript_id "HERV9_Yq11.221m"; locus "HERV9_Yq11.221m"; repName "LTR12B"; geneRegion "ltr"; locid "HERV9-int_0216"; repClass "LTR"; repEnd "436"; repFamily "ERV1"; repLeft "-231"; repStart "1"; ### HERVS71_Yq11.221b ### chrY rmsk gene 16381183 16387906 . - . gene_id "HERVS71_Yq11.221b"; transcript_id "HERVS71_Yq11.221b"; locus "HERVS71_Yq11.221b"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0058"; model_cov "7846"; model_pct "87.4"; chrY rmsk exon 16381183 16381254 483 - . gene_id "HERVS71_Yq11.221b"; transcript_id "HERVS71_Yq11.221b"; locus "HERVS71_Yq11.221b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0058"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "493"; repStart "0"; chrY rmsk exon 16381255 16387351 21949 - . gene_id "HERVS71_Yq11.221b"; transcript_id "HERVS71_Yq11.221b"; locus "HERVS71_Yq11.221b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0058"; repClass "LTR"; repEnd "7850"; repFamily "ERV1"; repLeft "4"; repStart "-1128"; chrY rmsk exon 16387354 16387906 3908 - . gene_id "HERVS71_Yq11.221b"; transcript_id "HERVS71_Yq11.221b"; locus "HERVS71_Yq11.221b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0058"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV30_Yq11.221b ### chrY rmsk gene 16412314 16421503 . + . gene_id "HERV30_Yq11.221b"; transcript_id "HERV30_Yq11.221b"; locus "HERV30_Yq11.221b"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0028"; model_cov "7987"; model_pct "96.7"; chrY rmsk exon 16412314 16412938 3011 + . gene_id "HERV30_Yq11.221b"; transcript_id "HERV30_Yq11.221b"; locus "HERV30_Yq11.221b"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0028"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "6"; chrY rmsk exon 16412939 16419610 32566 + . gene_id "HERV30_Yq11.221b"; transcript_id "HERV30_Yq11.221b"; locus "HERV30_Yq11.221b"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0028"; repClass "LTR"; repEnd "6795"; repFamily "ERV1"; repLeft "-1462"; repStart "1"; chrY rmsk exon 16419613 16420795 9324 + . gene_id "HERV30_Yq11.221b"; transcript_id "HERV30_Yq11.221b"; locus "HERV30_Yq11.221b"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0028"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7064"; chrY rmsk exon 16420796 16421503 4353 + . gene_id "HERV30_Yq11.221b"; transcript_id "HERV30_Yq11.221b"; locus "HERV30_Yq11.221b"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0028"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR19_Yq11.221f ### chrY rmsk gene 16575374 16576996 . - . gene_id "LTR19_Yq11.221f"; transcript_id "LTR19_Yq11.221f"; locus "LTR19_Yq11.221f"; category "internal"; intModel "LTR19-int"; locid "LTR19-int_0083"; model_cov "1397"; model_pct "25.0"; chrY rmsk exon 16575374 16575552 5870 - . gene_id "LTR19_Yq11.221f"; transcript_id "LTR19_Yq11.221f"; locus "LTR19_Yq11.221f"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0083"; repClass "LTR"; repEnd "4021"; repFamily "ERV1"; repLeft "3839"; repStart "-1565"; chrY rmsk exon 16575793 16576996 5870 - . gene_id "LTR19_Yq11.221f"; transcript_id "LTR19_Yq11.221f"; locus "LTR19_Yq11.221f"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0083"; repClass "LTR"; repEnd "3838"; repFamily "ERV1"; repLeft "2623"; repStart "-1748"; ### HERVL66_Yq11.221 ### chrY rmsk gene 16614861 16615842 . + . gene_id "HERVL66_Yq11.221"; transcript_id "HERVL66_Yq11.221"; locus "HERVL66_Yq11.221"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0053"; model_cov "483"; model_pct "11.2"; chrY rmsk exon 16614861 16615259 1862 + . gene_id "HERVL66_Yq11.221"; transcript_id "HERVL66_Yq11.221"; locus "HERVL66_Yq11.221"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0053"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "3846"; chrY rmsk exon 16615260 16615659 2763 + . gene_id "HERVL66_Yq11.221"; transcript_id "HERVL66_Yq11.221"; locus "HERVL66_Yq11.221"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0053"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "1"; chrY rmsk exon 16615630 16615729 500 + . gene_id "HERVL66_Yq11.221"; transcript_id "HERVL66_Yq11.221"; locus "HERVL66_Yq11.221"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0053"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-209"; repStart "299"; chrY rmsk exon 16615731 16615842 622 + . gene_id "HERVL66_Yq11.221"; transcript_id "HERVL66_Yq11.221"; locus "HERVL66_Yq11.221"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0053"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-172"; repStart "332"; ### HERVEA_Yq11.221d ### chrY rmsk gene 16636050 16644799 . - . gene_id "HERVEA_Yq11.221d"; transcript_id "HERVEA_Yq11.221d"; locus "HERVEA_Yq11.221d"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0122"; model_cov "7846"; model_pct "100.0"; chrY rmsk exon 16636050 16636550 2530 - . gene_id "HERVEA_Yq11.221d"; transcript_id "HERVEA_Yq11.221d"; locus "HERVEA_Yq11.221d"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0122"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 16636551 16644308 50862 - . gene_id "HERVEA_Yq11.221d"; transcript_id "HERVEA_Yq11.221d"; locus "HERVEA_Yq11.221d"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0122"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 16644309 16644799 2875 - . gene_id "HERVEA_Yq11.221d"; transcript_id "HERVEA_Yq11.221d"; locus "HERVEA_Yq11.221d"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0122"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_Yq11.221c ### chrY rmsk gene 16677462 16681241 . - . gene_id "HML3_Yq11.221c"; transcript_id "HML3_Yq11.221c"; locus "HML3_Yq11.221c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0257"; model_cov "3367"; model_pct "55.9"; chrY rmsk exon 16677462 16677546 1118 - . gene_id "HML3_Yq11.221c"; transcript_id "HML3_Yq11.221c"; locus "HML3_Yq11.221c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0257"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "435"; repStart "0"; chrY rmsk exon 16677834 16677928 1118 - . gene_id "HML3_Yq11.221c"; transcript_id "HML3_Yq11.221c"; locus "HML3_Yq11.221c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0257"; repClass "LTR"; repEnd "434"; repFamily "ERVK"; repLeft "345"; repStart "-78"; chrY rmsk exon 16677929 16679596 12372 - . gene_id "HML3_Yq11.221c"; transcript_id "HML3_Yq11.221c"; locus "HML3_Yq11.221c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0257"; repClass "LTR"; repEnd "5270"; repFamily "ERVK"; repLeft "3613"; repStart "-751"; chrY rmsk exon 16679594 16681241 11830 - . gene_id "HML3_Yq11.221c"; transcript_id "HML3_Yq11.221c"; locus "HML3_Yq11.221c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0257"; repClass "LTR"; repEnd "2495"; repFamily "ERVK"; repLeft "785"; repStart "-3526"; ### HML3_Yq11.221d ### chrY rmsk gene 16681302 16682607 . - . gene_id "HML3_Yq11.221d"; transcript_id "HML3_Yq11.221d"; locus "HML3_Yq11.221d"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0258"; model_cov "752"; model_pct "12.5"; chrY rmsk exon 16681302 16681497 11830 - . gene_id "HML3_Yq11.221d"; transcript_id "HML3_Yq11.221d"; locus "HML3_Yq11.221d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0258"; repClass "LTR"; repEnd "2495"; repFamily "ERVK"; repLeft "2291"; repStart "-3526"; chrY rmsk exon 16681493 16681778 1997 - . gene_id "HML3_Yq11.221d"; transcript_id "HML3_Yq11.221d"; locus "HML3_Yq11.221d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0258"; repClass "LTR"; repEnd "627"; repFamily "ERVK"; repLeft "350"; repStart "-5394"; chrY rmsk exon 16681853 16682119 1759 - . gene_id "HML3_Yq11.221d"; transcript_id "HML3_Yq11.221d"; locus "HML3_Yq11.221d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0258"; repClass "LTR"; repEnd "272"; repFamily "ERVK"; repLeft "1"; repStart "-5749"; chrY rmsk exon 16682120 16682607 3464 - . gene_id "HML3_Yq11.221d"; transcript_id "HML3_Yq11.221d"; locus "HML3_Yq11.221d"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0258"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVEA_Yq11.221e ### chrY rmsk gene 16831361 16840581 . + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0123"; model_cov "7582"; model_pct "96.6"; chrY rmsk exon 16831361 16831829 3521 + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0123"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 16832207 16832486 10847 + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0123"; repClass "LTR"; repEnd "539"; repFamily "ERV1"; repLeft "-7308"; repStart "262"; chrY rmsk exon 16832537 16839532 42799 + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0123"; repClass "LTR"; repEnd "7600"; repFamily "ERV1"; repLeft "-247"; repStart "540"; chrY rmsk exon 16839857 16840113 42799 + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0123"; repClass "LTR"; repEnd "7846"; repFamily "ERV1"; repLeft "-1"; repStart "7601"; chrY rmsk exon 16840114 16840581 3445 + . gene_id "HERVEA_Yq11.221e"; transcript_id "HERVEA_Yq11.221e"; locus "HERVEA_Yq11.221e"; repName "LTR2B"; geneRegion "ltr"; locid "HERVE_a-int_0123"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML3_Yq11.221e ### chrY rmsk gene 16875111 16879335 . + . gene_id "HML3_Yq11.221e"; transcript_id "HML3_Yq11.221e"; locus "HML3_Yq11.221e"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0259"; model_cov "3787"; model_pct "62.9"; chrY rmsk exon 16875111 16875255 1035 + . gene_id "HML3_Yq11.221e"; transcript_id "HML3_Yq11.221e"; locus "HML3_Yq11.221e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0259"; repClass "LTR"; repEnd "1921"; repFamily "ERVK"; repLeft "-4100"; repStart "1777"; chrY rmsk exon 16875253 16878821 20047 + . gene_id "HML3_Yq11.221e"; transcript_id "HML3_Yq11.221e"; locus "HML3_Yq11.221e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0259"; repClass "LTR"; repEnd "6019"; repFamily "ERVK"; repLeft "-2"; repStart "2376"; chrY rmsk exon 16878824 16879335 4163 + . gene_id "HML3_Yq11.221e"; transcript_id "HML3_Yq11.221e"; locus "HML3_Yq11.221e"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0259"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML4_Yq11.221 ### chrY rmsk gene 16953670 16959941 . + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; category "prototype"; intModel "HERVK13-int"; locid "HERVK13-int_0025"; model_cov "4494"; model_pct "55.4"; chrY rmsk exon 16953670 16954668 7300 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 16954669 16954849 820 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "182"; repFamily "ERVK"; repLeft "-7934"; repStart "1"; chrY rmsk exon 16955154 16955309 585 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "1230"; repFamily "ERVK"; repLeft "-6886"; repStart "1078"; chrY rmsk exon 16955437 16955518 338 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "5338"; repFamily "ERVK"; repLeft "-2778"; repStart "5257"; chrY rmsk exon 16955560 16958946 10202 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "HERVK13-int"; geneRegion "internal"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "8116"; repFamily "ERVK"; repLeft "0"; repStart "4036"; chrY rmsk exon 16958947 16959941 7496 + . gene_id "HML4_Yq11.221"; transcript_id "HML4_Yq11.221"; locus "HML4_Yq11.221"; repName "LTR13"; geneRegion "ltr"; locid "HERVK13-int_0025"; repClass "LTR"; repEnd "1007"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVH_Yq11.222a ### chrY rmsk gene 17131121 17132654 . - . gene_id "HERVH_Yq11.222a"; transcript_id "HERVH_Yq11.222a"; locus "HERVH_Yq11.222a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1312"; model_cov "1436"; model_pct "18.6"; chrY rmsk exon 17131121 17131255 692 - . gene_id "HERVH_Yq11.222a"; transcript_id "HERVH_Yq11.222a"; locus "HERVH_Yq11.222a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1312"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "317"; repStart "0"; chrY rmsk exon 17131258 17132129 4309 - . gene_id "HERVH_Yq11.222a"; transcript_id "HERVH_Yq11.222a"; locus "HERVH_Yq11.222a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1312"; repClass "LTR"; repEnd "6948"; repFamily "ERV1"; repLeft "6058"; repStart "-765"; chrY rmsk exon 17132108 17132542 2014 - . gene_id "HERVH_Yq11.222a"; transcript_id "HERVH_Yq11.222a"; locus "HERVH_Yq11.222a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1312"; repClass "LTR"; repEnd "5764"; repFamily "ERV1"; repLeft "5326"; repStart "-1949"; chrY rmsk exon 17132546 17132654 803 - . gene_id "HERVH_Yq11.222a"; transcript_id "HERVH_Yq11.222a"; locus "HERVH_Yq11.222a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1312"; repClass "LTR"; repEnd "5363"; repFamily "ERV1"; repLeft "5255"; repStart "-2350"; ### HERVW_Yq11.222a ### chrY rmsk gene 17132658 17137187 . - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0326"; model_cov "2114"; model_pct "24.5"; chrY rmsk exon 17132658 17133439 4915 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "778"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 17133440 17133731 1980 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "8335"; repStart "0"; chrY rmsk exon 17133725 17133760 274 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "7545"; repFamily "ERV1"; repLeft "7510"; repStart "-1081"; chrY rmsk exon 17133754 17134369 4884 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "5405"; repStart "-2607"; chrY rmsk exon 17134349 17135000 4762 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "3754"; repFamily "ERV1"; repLeft "3101"; repStart "-4872"; chrY rmsk exon 17135829 17136351 3314 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "523"; repFamily "ERV1"; repLeft "2"; repStart "-8103"; chrY rmsk exon 17136352 17137187 4194 - . gene_id "HERVW_Yq11.222a"; transcript_id "HERVW_Yq11.222a"; locus "HERVW_Yq11.222a"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0326"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "5"; repStart "0"; ### HERVIP10FH_Yq11.222a ### chrY rmsk gene 17134981 17135822 . + . gene_id "HERVIP10FH_Yq11.222a"; transcript_id "HERVIP10FH_Yq11.222a"; locus "HERVIP10FH_Yq11.222a"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0224"; model_cov "613"; model_pct "12.0"; chrY rmsk exon 17134981 17135185 1343 + . gene_id "HERVIP10FH_Yq11.222a"; transcript_id "HERVIP10FH_Yq11.222a"; locus "HERVIP10FH_Yq11.222a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0224"; repClass "LTR"; repEnd "-2815"; repFamily "ERV1"; repLeft "-7917"; repStart "-3049"; chrY rmsk exon 17135455 17135822 1980 + . gene_id "HERVIP10FH_Yq11.222a"; transcript_id "HERVIP10FH_Yq11.222a"; locus "HERVIP10FH_Yq11.222a"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0224"; repClass "LTR"; repEnd "1221"; repFamily "ERV1"; repLeft "-3881"; repStart "842"; ### HERVH_Yq11.222b ### chrY rmsk gene 17137191 17142090 . - . gene_id "HERVH_Yq11.222b"; transcript_id "HERVH_Yq11.222b"; locus "HERVH_Yq11.222b"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1313"; model_cov "4657"; model_pct "60.4"; chrY rmsk exon 17137191 17138485 8050 - . gene_id "HERVH_Yq11.222b"; transcript_id "HERVH_Yq11.222b"; locus "HERVH_Yq11.222b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1313"; repClass "LTR"; repEnd "5259"; repFamily "ERV1"; repLeft "3938"; repStart "-2454"; chrY rmsk exon 17138642 17138784 13777 - . gene_id "HERVH_Yq11.222b"; transcript_id "HERVH_Yq11.222b"; locus "HERVH_Yq11.222b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1313"; repClass "LTR"; repEnd "3338"; repFamily "ERV1"; repLeft "3188"; repStart "-4375"; chrY rmsk exon 17138830 17141722 13777 - . gene_id "HERVH_Yq11.222b"; transcript_id "HERVH_Yq11.222b"; locus "HERVH_Yq11.222b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1313"; repClass "LTR"; repEnd "3187"; repFamily "ERV1"; repLeft "1"; repStart "-4526"; chrY rmsk exon 17141723 17142090 2099 - . gene_id "HERVH_Yq11.222b"; transcript_id "HERVH_Yq11.222b"; locus "HERVH_Yq11.222b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1313"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_Yq11.222 ### chrY rmsk gene 17166291 17167890 . + . gene_id "ERVLE_Yq11.222"; transcript_id "ERVLE_Yq11.222"; locus "ERVLE_Yq11.222"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3790"; model_cov "614"; model_pct "10.8"; chrY rmsk exon 17166291 17166395 370 + . gene_id "ERVLE_Yq11.222"; transcript_id "ERVLE_Yq11.222"; locus "ERVLE_Yq11.222"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3790"; repClass "LTR"; repEnd "815"; repFamily "ERVL"; repLeft "-4852"; repStart "710"; chrY rmsk exon 17167183 17167266 297 + . gene_id "ERVLE_Yq11.222"; transcript_id "ERVLE_Yq11.222"; locus "ERVLE_Yq11.222"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3790"; repClass "LTR"; repEnd "1584"; repFamily "ERVL"; repLeft "-4083"; repStart "1502"; chrY rmsk exon 17167475 17167890 383 + . gene_id "ERVLE_Yq11.222"; transcript_id "ERVLE_Yq11.222"; locus "ERVLE_Yq11.222"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3790"; repClass "LTR"; repEnd "2272"; repFamily "ERVL"; repLeft "-3395"; repStart "1845"; ### HML6_Yq11.222a ### chrY rmsk gene 17331572 17337113 . + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0104"; model_cov "3075"; model_pct "42.7"; chrY rmsk exon 17331572 17332045 2403 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "468"; repFamily "ERVK"; repLeft "-16"; repStart "1"; chrY rmsk exon 17332046 17332886 5023 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "866"; repFamily "ERVK"; repLeft "-6336"; repStart "8"; chrY rmsk exon 17332877 17333287 2487 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "1057"; repFamily "ERVK"; repLeft "-6145"; repStart "647"; chrY rmsk exon 17333587 17333734 789 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "2851"; repFamily "ERVK"; repLeft "-4351"; repStart "2697"; chrY rmsk exon 17334153 17334236 524 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "3922"; repFamily "ERVK"; repLeft "-3280"; repStart "3839"; chrY rmsk exon 17334229 17334251 720 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "4062"; repFamily "ERVK"; repLeft "-3140"; repStart "4041"; chrY rmsk exon 17334769 17334927 809 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "4114"; repFamily "ERVK"; repLeft "-3088"; repStart "3967"; chrY rmsk exon 17334930 17335381 2690 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "2872"; repFamily "ERVK"; repLeft "-4330"; repStart "2417"; chrY rmsk exon 17335366 17335534 1188 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "4245"; repFamily "ERVK"; repLeft "-2957"; repStart "4078"; chrY rmsk exon 17335842 17335880 1188 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "4265"; repFamily "ERVK"; repLeft "-2937"; repStart "4246"; chrY rmsk exon 17335882 17336548 3643 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "5313"; repFamily "ERVK"; repLeft "-1889"; repStart "4645"; chrY rmsk exon 17336569 17336662 653 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "0"; repStart "7109"; chrY rmsk exon 17336663 17337113 2416 + . gene_id "HML6_Yq11.222a"; transcript_id "HML6_Yq11.222a"; locus "HML6_Yq11.222a"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0104"; repClass "LTR"; repEnd "445"; repFamily "ERVK"; repLeft "-39"; repStart "1"; ### HERVFH21_Yq11.222 ### chrY rmsk gene 17340894 17346933 . - . gene_id "HERVFH21_Yq11.222"; transcript_id "HERVFH21_Yq11.222"; locus "HERVFH21_Yq11.222"; category "oneside"; intModel "HERVFH21-int"; locid "HERVFH21-int_0046"; model_cov "3731"; model_pct "57.1"; chrY rmsk exon 17340894 17341314 1010 - . gene_id "HERVFH21_Yq11.222"; transcript_id "HERVFH21_Yq11.222"; locus "HERVFH21_Yq11.222"; repName "LTR21A"; geneRegion "ltr"; locid "HERVFH21-int_0046"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 17341481 17341569 331 - . gene_id "HERVFH21_Yq11.222"; transcript_id "HERVFH21_Yq11.222"; locus "HERVFH21_Yq11.222"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0046"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "6413"; repStart "-28"; chrY rmsk exon 17343566 17345712 7097 - . gene_id "HERVFH21_Yq11.222"; transcript_id "HERVFH21_Yq11.222"; locus "HERVFH21_Yq11.222"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0046"; repClass "LTR"; repEnd "5366"; repFamily "ERV1"; repLeft "2949"; repStart "-1163"; chrY rmsk exon 17345710 17346933 7126 - . gene_id "HERVFH21_Yq11.222"; transcript_id "HERVFH21_Yq11.222"; locus "HERVFH21_Yq11.222"; repName "HERVFH21-int"; geneRegion "internal"; locid "HERVFH21-int_0046"; repClass "LTR"; repEnd "2291"; repFamily "ERV1"; repLeft "1065"; repStart "-4238"; ### HERV9_Yq11.222a ### chrY rmsk gene 17341591 17343057 . - . gene_id "HERV9_Yq11.222a"; transcript_id "HERV9_Yq11.222a"; locus "HERV9_Yq11.222a"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0218"; model_cov "1485"; model_pct "17.6"; chrY rmsk exon 17341591 17343057 5952 - . gene_id "HERV9_Yq11.222a"; transcript_id "HERV9_Yq11.222a"; locus "HERV9_Yq11.222a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0218"; repClass "LTR"; repEnd "8070"; repFamily "ERV1"; repLeft "6585"; repStart "-366"; ### HERV9_Yq11.222b ### chrY rmsk gene 17347284 17354220 . - . gene_id "HERV9_Yq11.222b"; transcript_id "HERV9_Yq11.222b"; locus "HERV9_Yq11.222b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0219"; model_cov "5331"; model_pct "63.2"; chrY rmsk exon 17347284 17348087 4735 - . gene_id "HERV9_Yq11.222b"; transcript_id "HERV9_Yq11.222b"; locus "HERV9_Yq11.222b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0219"; repClass "LTR"; repEnd "1242"; repFamily "ERV1"; repLeft "370"; repStart "-12"; chrY rmsk exon 17348088 17353376 21037 - . gene_id "HERV9_Yq11.222b"; transcript_id "HERV9_Yq11.222b"; locus "HERV9_Yq11.222b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0219"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "3105"; repStart "0"; chrY rmsk exon 17353390 17354220 5125 - . gene_id "HERV9_Yq11.222b"; transcript_id "HERV9_Yq11.222b"; locus "HERV9_Yq11.222b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0219"; repClass "LTR"; repEnd "1242"; repFamily "ERV1"; repLeft "362"; repStart "-12"; ### HERVL66_Yq11.222 ### chrY rmsk gene 17402049 17404891 . + . gene_id "HERVL66_Yq11.222"; transcript_id "HERVL66_Yq11.222"; locus "HERVL66_Yq11.222"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0054"; model_cov "2599"; model_pct "60.0"; chrY rmsk exon 17402049 17403597 6313 + . gene_id "HERVL66_Yq11.222"; transcript_id "HERVL66_Yq11.222"; locus "HERVL66_Yq11.222"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0054"; repClass "LTR"; repEnd "1625"; repFamily "ERVL"; repLeft "-2704"; repStart "5"; chrY rmsk exon 17403747 17404286 2889 + . gene_id "HERVL66_Yq11.222"; transcript_id "HERVL66_Yq11.222"; locus "HERVL66_Yq11.222"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0054"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "-1129"; repStart "2652"; chrY rmsk exon 17404285 17404712 2902 + . gene_id "HERVL66_Yq11.222"; transcript_id "HERVL66_Yq11.222"; locus "HERVL66_Yq11.222"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0054"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "3898"; chrY rmsk exon 17404713 17404891 1936 + . gene_id "HERVL66_Yq11.222"; transcript_id "HERVL66_Yq11.222"; locus "HERVL66_Yq11.222"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0054"; repClass "LTR"; repEnd "178"; repFamily "ERVL"; repLeft "-432"; repStart "1"; ### HUERSP1_Yq11.222a ### chrY rmsk gene 17412390 17418914 . + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0235"; model_cov "5037"; model_pct "80.4"; chrY rmsk exon 17412390 17413050 4538 + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0235"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 17413051 17416371 31833 + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0235"; repClass "LTR"; repEnd "3408"; repFamily "ERV1"; repLeft "-2855"; repStart "1"; chrY rmsk exon 17416663 17417231 31833 + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0235"; repClass "LTR"; repEnd "3953"; repFamily "ERV1"; repLeft "-2310"; repStart "3409"; chrY rmsk exon 17417533 17418432 31833 + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0235"; repClass "LTR"; repEnd "4855"; repFamily "ERV1"; repLeft "-1408"; repStart "3954"; chrY rmsk exon 17418723 17418914 31833 + . gene_id "HUERSP1_Yq11.222a"; transcript_id "HUERSP1_Yq11.222a"; locus "HUERSP1_Yq11.222a"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0235"; repClass "LTR"; repEnd "5041"; repFamily "ERV1"; repLeft "-1222"; repStart "4856"; ### HERV30_Yq11.222 ### chrY rmsk gene 17418915 17424491 . - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0029"; model_cov "4042"; model_pct "49.0"; chrY rmsk exon 17418915 17419393 2864 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "195"; repStart "0"; chrY rmsk exon 17419398 17419968 3806 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "7927"; repFamily "ERV1"; repLeft "7344"; repStart "-330"; chrY rmsk exon 17419962 17420045 594 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "3378"; repStart "-4795"; chrY rmsk exon 17420126 17420830 24483 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "3377"; repFamily "ERV1"; repLeft "2698"; repStart "-4880"; chrY rmsk exon 17421149 17423832 24483 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "2697"; repFamily "ERV1"; repLeft "1"; repStart "-5560"; chrY rmsk exon 17423833 17424491 4493 - . gene_id "HERV30_Yq11.222"; transcript_id "HERV30_Yq11.222"; locus "HERV30_Yq11.222"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0029"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HUERSP1_Yq11.222b ### chrY rmsk gene 17424492 17426742 . + . gene_id "HUERSP1_Yq11.222b"; transcript_id "HUERSP1_Yq11.222b"; locus "HUERSP1_Yq11.222b"; category "oneside"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0236"; model_cov "1225"; model_pct "19.6"; chrY rmsk exon 17424492 17425725 7656 + . gene_id "HUERSP1_Yq11.222b"; transcript_id "HUERSP1_Yq11.222b"; locus "HUERSP1_Yq11.222b"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0236"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "0"; repStart "5038"; chrY rmsk exon 17426061 17426742 4556 + . gene_id "HUERSP1_Yq11.222b"; transcript_id "HUERSP1_Yq11.222b"; locus "HUERSP1_Yq11.222b"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0236"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "0"; repStart "2"; ### HML6_Yq11.222b ### chrY rmsk gene 17474865 17476808 . - . gene_id "HML6_Yq11.222b"; transcript_id "HML6_Yq11.222b"; locus "HML6_Yq11.222b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0105"; model_cov "1517"; model_pct "21.1"; chrY rmsk exon 17474865 17475291 1807 - . gene_id "HML6_Yq11.222b"; transcript_id "HML6_Yq11.222b"; locus "HML6_Yq11.222b"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0105"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "2"; repStart "-5"; chrY rmsk exon 17475295 17476520 4857 - . gene_id "HML6_Yq11.222b"; transcript_id "HML6_Yq11.222b"; locus "HML6_Yq11.222b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0105"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "5962"; repStart "-2"; chrY rmsk exon 17476529 17476808 1490 - . gene_id "HML6_Yq11.222b"; transcript_id "HML6_Yq11.222b"; locus "HML6_Yq11.222b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0105"; repClass "LTR"; repEnd "3147"; repFamily "ERVK"; repLeft "2868"; repStart "-4055"; ### LTR25_Yq11.222a ### chrY rmsk gene 17476905 17477776 . - . gene_id "LTR25_Yq11.222a"; transcript_id "LTR25_Yq11.222a"; locus "LTR25_Yq11.222a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0175"; model_cov "910"; model_pct "12.7"; chrY rmsk exon 17476905 17477776 3100 - . gene_id "LTR25_Yq11.222a"; transcript_id "LTR25_Yq11.222a"; locus "LTR25_Yq11.222a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0175"; repClass "LTR"; repEnd "2441"; repFamily "ERV1"; repLeft "1531"; repStart "-4747"; ### PRIMA41_Yq11.222a ### chrY rmsk gene 17519602 17524241 . - . gene_id "PRIMA41_Yq11.222a"; transcript_id "PRIMA41_Yq11.222a"; locus "PRIMA41_Yq11.222a"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0182"; model_cov "3995"; model_pct "51.5"; chrY rmsk exon 17519602 17519768 442 - . gene_id "PRIMA41_Yq11.222a"; transcript_id "PRIMA41_Yq11.222a"; locus "PRIMA41_Yq11.222a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0182"; repClass "LTR"; repEnd "6719"; repFamily "ERV1"; repLeft "6545"; repStart "-1037"; chrY rmsk exon 17519776 17520733 7418 - . gene_id "PRIMA41_Yq11.222a"; transcript_id "PRIMA41_Yq11.222a"; locus "PRIMA41_Yq11.222a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0182"; repClass "LTR"; repEnd "5480"; repFamily "ERV1"; repLeft "4519"; repStart "-2276"; chrY rmsk exon 17521408 17524241 7418 - . gene_id "PRIMA41_Yq11.222a"; transcript_id "PRIMA41_Yq11.222a"; locus "PRIMA41_Yq11.222a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0182"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "1658"; repStart "-3238"; ### HERVFC1_Yq11.222a ### chrY rmsk gene 17609729 17614986 . + . gene_id "HERVFC1_Yq11.222a"; transcript_id "HERVFC1_Yq11.222a"; locus "HERVFC1_Yq11.222a"; category "prototype"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0006"; model_cov "4628"; model_pct "100.0"; chrY rmsk exon 17609729 17610071 2610 + . gene_id "HERVFC1_Yq11.222a"; transcript_id "HERVFC1_Yq11.222a"; locus "HERVFC1_Yq11.222a"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0006"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 17610072 17614646 20798 + . gene_id "HERVFC1_Yq11.222a"; transcript_id "HERVFC1_Yq11.222a"; locus "HERVFC1_Yq11.222a"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0006"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 17614647 17614986 2826 + . gene_id "HERVFC1_Yq11.222a"; transcript_id "HERVFC1_Yq11.222a"; locus "HERVFC1_Yq11.222a"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0006"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "-6"; repStart "1"; ### HERVK14C_Yq11.222a ### chrY rmsk gene 17669825 17671789 . - . gene_id "HERVK14C_Yq11.222a"; transcript_id "HERVK14C_Yq11.222a"; locus "HERVK14C_Yq11.222a"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0031"; model_cov "1492"; model_pct "20.1"; chrY rmsk exon 17669825 17671213 6242 - . gene_id "HERVK14C_Yq11.222a"; transcript_id "HERVK14C_Yq11.222a"; locus "HERVK14C_Yq11.222a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0031"; repClass "LTR"; repEnd "1493"; repFamily "ERVK"; repLeft "1"; repStart "-5941"; chrY rmsk exon 17671214 17671789 3948 - . gene_id "HERVK14C_Yq11.222a"; transcript_id "HERVK14C_Yq11.222a"; locus "HERVK14C_Yq11.222a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0031"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVK11_Yq11.222a ### chrY rmsk gene 17684517 17688174 . + . gene_id "HERVK11_Yq11.222a"; transcript_id "HERVK11_Yq11.222a"; locus "HERVK11_Yq11.222a"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0116"; model_cov "2660"; model_pct "33.4"; chrY rmsk exon 17684517 17684939 2941 + . gene_id "HERVK11_Yq11.222a"; transcript_id "HERVK11_Yq11.222a"; locus "HERVK11_Yq11.222a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0116"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "4179"; chrY rmsk exon 17684938 17686121 8303 + . gene_id "HERVK11_Yq11.222a"; transcript_id "HERVK11_Yq11.222a"; locus "HERVK11_Yq11.222a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0116"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "-1186"; repStart "5525"; chrY rmsk exon 17686107 17687096 7078 + . gene_id "HERVK11_Yq11.222a"; transcript_id "HERVK11_Yq11.222a"; locus "HERVK11_Yq11.222a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0116"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chrY rmsk exon 17687097 17688174 5956 + . gene_id "HERVK11_Yq11.222a"; transcript_id "HERVK11_Yq11.222a"; locus "HERVK11_Yq11.222a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0116"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "-4"; repStart "1"; ### HML6_Yq11.222c ### chrY rmsk gene 17846449 17851138 . - . gene_id "HML6_Yq11.222c"; transcript_id "HML6_Yq11.222c"; locus "HML6_Yq11.222c"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0107"; model_cov "4058"; model_pct "56.3"; chrY rmsk exon 17846449 17846874 2019 - . gene_id "HML6_Yq11.222c"; transcript_id "HML6_Yq11.222c"; locus "HML6_Yq11.222c"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0107"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chrY rmsk exon 17847182 17851138 8071 - . gene_id "HML6_Yq11.222c"; transcript_id "HML6_Yq11.222c"; locus "HML6_Yq11.222c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0107"; repClass "LTR"; repEnd "7198"; repFamily "ERVK"; repLeft "3140"; repStart "-4"; ### LTR25_Yq11.222b ### chrY rmsk gene 17852000 17853308 . - . gene_id "LTR25_Yq11.222b"; transcript_id "LTR25_Yq11.222b"; locus "LTR25_Yq11.222b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0176"; model_cov "1307"; model_pct "18.2"; chrY rmsk exon 17852000 17852612 1952 - . gene_id "LTR25_Yq11.222b"; transcript_id "LTR25_Yq11.222b"; locus "LTR25_Yq11.222b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0176"; repClass "LTR"; repEnd "1445"; repFamily "ERV1"; repLeft "835"; repStart "-5743"; chrY rmsk exon 17852633 17853308 2535 - . gene_id "LTR25_Yq11.222b"; transcript_id "LTR25_Yq11.222b"; locus "LTR25_Yq11.222b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0176"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "69"; repStart "-6422"; ### HUERSP3_Yq11.222a ### chrY rmsk gene 17855203 17856850 . + . gene_id "HUERSP3_Yq11.222a"; transcript_id "HUERSP3_Yq11.222a"; locus "HUERSP3_Yq11.222a"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0242"; model_cov "1357"; model_pct "15.2"; chrY rmsk exon 17855203 17855568 3188 + . gene_id "HUERSP3_Yq11.222a"; transcript_id "HUERSP3_Yq11.222a"; locus "HUERSP3_Yq11.222a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0242"; repClass "LTR"; repEnd "2084"; repFamily "ERV1"; repLeft "-6835"; repStart "1695"; chrY rmsk exon 17855878 17856850 3188 + . gene_id "HUERSP3_Yq11.222a"; transcript_id "HUERSP3_Yq11.222a"; locus "HUERSP3_Yq11.222a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0242"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-5866"; repStart "2085"; ### LTR25_Yq11.222c ### chrY rmsk gene 17856852 17860460 . - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0178"; model_cov "1853"; model_pct "25.8"; chrY rmsk exon 17856852 17857347 938 - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0178"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "273"; repStart "-2"; chrY rmsk exon 17857399 17857470 316 - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0178"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "220"; repStart "-553"; chrY rmsk exon 17857596 17858441 3148 - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0178"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "6315"; repStart "-23"; chrY rmsk exon 17859442 17859521 3148 - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0178"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "6235"; repStart "-874"; chrY rmsk exon 17859527 17860460 3276 - . gene_id "LTR25_Yq11.222c"; transcript_id "LTR25_Yq11.222c"; locus "LTR25_Yq11.222c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0178"; repClass "LTR"; repEnd "1883"; repFamily "ERV1"; repLeft "959"; repStart "-5305"; ### LTR25_Yq11.222d ### chrY rmsk gene 17860473 17872087 . + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0179"; model_cov "8905"; model_pct "100.0"; chrY rmsk exon 17860473 17861327 3205 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "12"; chrY rmsk exon 17861436 17864355 8489 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "1388"; repFamily "ERV1"; repLeft "-5800"; repStart "-1478"; chrY rmsk exon 17864387 17864453 3807 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "1458"; repFamily "ERV1"; repLeft "-5730"; repStart "1389"; chrY rmsk exon 17864454 17865130 2453 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "-200"; repStart "1"; chrY rmsk exon 17866540 17866770 742 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "630"; chrY rmsk exon 17866843 17867984 5621 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "3269"; repFamily "ERV1"; repLeft "-3919"; repStart "3188"; chrY rmsk exon 17868282 17871230 10012 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "1299"; chrY rmsk exon 17871240 17872087 2857 + . gene_id "LTR25_Yq11.222d"; transcript_id "LTR25_Yq11.222d"; locus "LTR25_Yq11.222d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0179"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "10"; ### LTR25_Yq11.222e ### chrY rmsk gene 17872091 17875800 . - . gene_id "LTR25_Yq11.222e"; transcript_id "LTR25_Yq11.222e"; locus "LTR25_Yq11.222e"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0180"; model_cov "2689"; model_pct "37.4"; chrY rmsk exon 17872091 17874791 8118 - . gene_id "LTR25_Yq11.222e"; transcript_id "LTR25_Yq11.222e"; locus "LTR25_Yq11.222e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0180"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "100"; repStart "-4399"; chrY rmsk exon 17875254 17875800 1238 - . gene_id "LTR25_Yq11.222e"; transcript_id "LTR25_Yq11.222e"; locus "LTR25_Yq11.222e"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0180"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "256"; repStart "-2"; ### HERVL_Yq11.222a ### chrY rmsk gene 17900890 17905603 . - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1434"; model_cov "4214"; model_pct "74.5"; chrY rmsk exon 17900890 17901269 1424 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; chrY rmsk exon 17901270 17903141 10513 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3810"; repStart "0"; chrY rmsk exon 17903136 17903524 2112 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "3201"; repStart "-2058"; chrY rmsk exon 17903513 17903666 826 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4503"; repStart "-998"; chrY rmsk exon 17903665 17905449 8981 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "1378"; repStart "-2454"; chrY rmsk exon 17905451 17905603 765 - . gene_id "HERVL_Yq11.222a"; transcript_id "HERVL_Yq11.222a"; locus "HERVL_Yq11.222a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1434"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "1"; repStart "-291"; ### HERVL_Yq11.222b ### chrY rmsk gene 17924142 17929454 . + . gene_id "HERVL_Yq11.222b"; transcript_id "HERVL_Yq11.222b"; locus "HERVL_Yq11.222b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1435"; model_cov "4930"; model_pct "87.2"; chrY rmsk exon 17924142 17928506 17360 + . gene_id "HERVL_Yq11.222b"; transcript_id "HERVL_Yq11.222b"; locus "HERVL_Yq11.222b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1435"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-429"; repStart "714"; chrY rmsk exon 17928828 17929234 2025 + . gene_id "HERVL_Yq11.222b"; transcript_id "HERVL_Yq11.222b"; locus "HERVL_Yq11.222b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1435"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5235"; chrY rmsk exon 17929235 17929454 808 + . gene_id "HERVL_Yq11.222b"; transcript_id "HERVL_Yq11.222b"; locus "HERVL_Yq11.222b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1435"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "-214"; repStart "1"; ### HML6_Yq11.222d ### chrY rmsk gene 17939128 17943709 . - . gene_id "HML6_Yq11.222d"; transcript_id "HML6_Yq11.222d"; locus "HML6_Yq11.222d"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0108"; model_cov "4327"; model_pct "60.1"; chrY rmsk exon 17939128 17939552 1874 - . gene_id "HML6_Yq11.222d"; transcript_id "HML6_Yq11.222d"; locus "HML6_Yq11.222d"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0108"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chrY rmsk exon 17939555 17943709 10065 - . gene_id "HML6_Yq11.222d"; transcript_id "HML6_Yq11.222d"; locus "HML6_Yq11.222d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0108"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "2873"; repStart "-2"; ### HML6_Yq11.222e ### chrY rmsk gene 17962269 17966850 . + . gene_id "HML6_Yq11.222e"; transcript_id "HML6_Yq11.222e"; locus "HML6_Yq11.222e"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0109"; model_cov "4327"; model_pct "60.1"; chrY rmsk exon 17962269 17966423 10813 + . gene_id "HML6_Yq11.222e"; transcript_id "HML6_Yq11.222e"; locus "HML6_Yq11.222e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0109"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "2873"; chrY rmsk exon 17966426 17966850 2014 + . gene_id "HML6_Yq11.222e"; transcript_id "HML6_Yq11.222e"; locus "HML6_Yq11.222e"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0109"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "1"; ### HERVL_Yq11.222c ### chrY rmsk gene 17976525 17981837 . - . gene_id "HERVL_Yq11.222c"; transcript_id "HERVL_Yq11.222c"; locus "HERVL_Yq11.222c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1436"; model_cov "4930"; model_pct "87.2"; chrY rmsk exon 17976525 17976744 879 - . gene_id "HERVL_Yq11.222c"; transcript_id "HERVL_Yq11.222c"; locus "HERVL_Yq11.222c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1436"; repClass "LTR"; repEnd "230"; repFamily "ERVL"; repLeft "1"; repStart "-214"; chrY rmsk exon 17976745 17977151 2155 - . gene_id "HERVL_Yq11.222c"; transcript_id "HERVL_Yq11.222c"; locus "HERVL_Yq11.222c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1436"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5235"; repStart "0"; chrY rmsk exon 17977473 17981837 18432 - . gene_id "HERVL_Yq11.222c"; transcript_id "HERVL_Yq11.222c"; locus "HERVL_Yq11.222c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1436"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "714"; repStart "-429"; ### HERVL_Yq11.222d ### chrY rmsk gene 18000404 18005117 . + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1437"; model_cov "4214"; model_pct "74.5"; chrY rmsk exon 18000404 18000556 765 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "-291"; repStart "1"; chrY rmsk exon 18000558 18002342 8977 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "-2454"; repStart "1378"; chrY rmsk exon 18002341 18002494 826 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-998"; repStart "4503"; chrY rmsk exon 18002483 18002871 2112 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "-2058"; repStart "3201"; chrY rmsk exon 18002866 18004737 10513 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3810"; chrY rmsk exon 18004738 18005117 1424 + . gene_id "HERVL_Yq11.222d"; transcript_id "HERVL_Yq11.222d"; locus "HERVL_Yq11.222d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1437"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### LTR25_Yq11.222f ### chrY rmsk gene 18030207 18033917 . + . gene_id "LTR25_Yq11.222f"; transcript_id "LTR25_Yq11.222f"; locus "LTR25_Yq11.222f"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0183"; model_cov "2689"; model_pct "37.4"; chrY rmsk exon 18030207 18030753 1052 + . gene_id "LTR25_Yq11.222f"; transcript_id "LTR25_Yq11.222f"; locus "LTR25_Yq11.222f"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0183"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "256"; chrY rmsk exon 18031216 18033917 7354 + . gene_id "LTR25_Yq11.222f"; transcript_id "LTR25_Yq11.222f"; locus "LTR25_Yq11.222f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0183"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-4399"; repStart "100"; ### LTR25_Yq11.222g ### chrY rmsk gene 18033921 18045535 . - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0184"; model_cov "7509"; model_pct "100.0"; chrY rmsk exon 18033921 18034768 2585 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "10"; repStart "0"; chrY rmsk exon 18034778 18037443 9259 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "4033"; repStart "0"; chrY rmsk exon 18037439 18037726 5078 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "4090"; repStart "-2818"; chrY rmsk exon 18038024 18039165 5078 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "4089"; repFamily "ERV1"; repLeft "2927"; repStart "-3099"; chrY rmsk exon 18039238 18039468 671 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "630"; repStart "0"; chrY rmsk exon 18040878 18041554 2260 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "1"; repStart "-200"; chrY rmsk exon 18041555 18041621 3386 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "1459"; repFamily "ERV1"; repLeft "1390"; repStart "-5729"; chrY rmsk exon 18041653 18044550 7729 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "1389"; repFamily "ERV1"; repLeft "-1454"; repStart "-5799"; chrY rmsk exon 18044681 18045535 2935 - . gene_id "LTR25_Yq11.222g"; transcript_id "LTR25_Yq11.222g"; locus "LTR25_Yq11.222g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0184"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "12"; repStart "0"; ### LTR25_Yq11.222h ### chrY rmsk gene 18045548 18049156 . + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0185"; model_cov "1853"; model_pct "25.8"; chrY rmsk exon 18045548 18046481 2983 + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0185"; repClass "LTR"; repEnd "1883"; repFamily "ERV1"; repLeft "-5305"; repStart "959"; chrY rmsk exon 18046487 18046566 2888 + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0185"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "-874"; repStart "6235"; chrY rmsk exon 18047567 18048412 2888 + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0185"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "-23"; repStart "6315"; chrY rmsk exon 18048538 18048609 295 + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0185"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "-553"; repStart "220"; chrY rmsk exon 18048661 18049156 827 + . gene_id "LTR25_Yq11.222h"; transcript_id "LTR25_Yq11.222h"; locus "LTR25_Yq11.222h"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0185"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "273"; ### HUERSP3_Yq11.222b ### chrY rmsk gene 18049158 18050796 . - . gene_id "HUERSP3_Yq11.222b"; transcript_id "HUERSP3_Yq11.222b"; locus "HUERSP3_Yq11.222b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0243"; model_cov "1348"; model_pct "15.1"; chrY rmsk exon 18049158 18050130 2792 - . gene_id "HUERSP3_Yq11.222b"; transcript_id "HUERSP3_Yq11.222b"; locus "HUERSP3_Yq11.222b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0243"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "2085"; repStart "-5866"; chrY rmsk exon 18050440 18050796 2792 - . gene_id "HUERSP3_Yq11.222b"; transcript_id "HUERSP3_Yq11.222b"; locus "HUERSP3_Yq11.222b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0243"; repClass "LTR"; repEnd "2084"; repFamily "ERV1"; repLeft "1704"; repStart "-6835"; ### LTR25_Yq11.222i ### chrY rmsk gene 18052703 18054001 . + . gene_id "LTR25_Yq11.222i"; transcript_id "LTR25_Yq11.222i"; locus "LTR25_Yq11.222i"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0187"; model_cov "1294"; model_pct "18.0"; chrY rmsk exon 18052703 18053378 2325 + . gene_id "LTR25_Yq11.222i"; transcript_id "LTR25_Yq11.222i"; locus "LTR25_Yq11.222i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0187"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "-6422"; repStart "69"; chrY rmsk exon 18053399 18054001 1769 + . gene_id "LTR25_Yq11.222i"; transcript_id "LTR25_Yq11.222i"; locus "LTR25_Yq11.222i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0187"; repClass "LTR"; repEnd "1432"; repFamily "ERV1"; repLeft "-5756"; repStart "835"; ### HML6_Yq11.222f ### chrY rmsk gene 18054873 18059562 . + . gene_id "HML6_Yq11.222f"; transcript_id "HML6_Yq11.222f"; locus "HML6_Yq11.222f"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0110"; model_cov "4324"; model_pct "60.0"; chrY rmsk exon 18054873 18055793 3539 + . gene_id "HML6_Yq11.222f"; transcript_id "HML6_Yq11.222f"; locus "HML6_Yq11.222f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0110"; repClass "LTR"; repEnd "3836"; repFamily "ERVK"; repLeft "-3366"; repStart "2872"; chrY rmsk exon 18055829 18058829 7071 + . gene_id "HML6_Yq11.222f"; transcript_id "HML6_Yq11.222f"; locus "HML6_Yq11.222f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0110"; repClass "LTR"; repEnd "6927"; repFamily "ERVK"; repLeft "-275"; repStart "3837"; chrY rmsk exon 18058874 18059135 7071 + . gene_id "HML6_Yq11.222f"; transcript_id "HML6_Yq11.222f"; locus "HML6_Yq11.222f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0110"; repClass "LTR"; repEnd "7198"; repFamily "ERVK"; repLeft "-4"; repStart "6928"; chrY rmsk exon 18059137 18059562 2019 + . gene_id "HML6_Yq11.222f"; transcript_id "HML6_Yq11.222f"; locus "HML6_Yq11.222f"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0110"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "1"; ### HERVK11_Yq11.222b ### chrY rmsk gene 18217840 18221497 . - . gene_id "HERVK11_Yq11.222b"; transcript_id "HERVK11_Yq11.222b"; locus "HERVK11_Yq11.222b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0117"; model_cov "2660"; model_pct "33.4"; chrY rmsk exon 18217840 18218917 5982 - . gene_id "HERVK11_Yq11.222b"; transcript_id "HERVK11_Yq11.222b"; locus "HERVK11_Yq11.222b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0117"; repClass "LTR"; repEnd "1232"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chrY rmsk exon 18218918 18219907 7078 - . gene_id "HERVK11_Yq11.222b"; transcript_id "HERVK11_Yq11.222b"; locus "HERVK11_Yq11.222b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0117"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chrY rmsk exon 18219893 18221076 8303 - . gene_id "HERVK11_Yq11.222b"; transcript_id "HERVK11_Yq11.222b"; locus "HERVK11_Yq11.222b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0117"; repClass "LTR"; repEnd "6767"; repFamily "ERVK"; repLeft "5525"; repStart "-1186"; chrY rmsk exon 18221075 18221497 2941 - . gene_id "HERVK11_Yq11.222b"; transcript_id "HERVK11_Yq11.222b"; locus "HERVK11_Yq11.222b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0117"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "4179"; repStart "-3352"; ### HERVK14C_Yq11.222b ### chrY rmsk gene 18234225 18236189 . + . gene_id "HERVK14C_Yq11.222b"; transcript_id "HERVK14C_Yq11.222b"; locus "HERVK14C_Yq11.222b"; category "oneside"; intModel "HERVK14C-int"; locid "HERVK14C-int_0032"; model_cov "1492"; model_pct "20.1"; chrY rmsk exon 18234225 18234800 3963 + . gene_id "HERVK14C_Yq11.222b"; transcript_id "HERVK14C_Yq11.222b"; locus "HERVK14C_Yq11.222b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0032"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 18234801 18236189 5927 + . gene_id "HERVK14C_Yq11.222b"; transcript_id "HERVK14C_Yq11.222b"; locus "HERVK14C_Yq11.222b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0032"; repClass "LTR"; repEnd "1493"; repFamily "ERVK"; repLeft "-5941"; repStart "1"; ### HERVFC1_Yq11.222b ### chrY rmsk gene 18291022 18296280 . - . gene_id "HERVFC1_Yq11.222b"; transcript_id "HERVFC1_Yq11.222b"; locus "HERVFC1_Yq11.222b"; category "prototype"; intModel "HERV-Fc1-int"; locid "HERV-Fc1-int_0007"; model_cov "4628"; model_pct "100.0"; chrY rmsk exon 18291022 18291361 2826 - . gene_id "HERVFC1_Yq11.222b"; transcript_id "HERVFC1_Yq11.222b"; locus "HERVFC1_Yq11.222b"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0007"; repClass "LTR"; repEnd "340"; repFamily "ERV1"; repLeft "1"; repStart "-6"; chrY rmsk exon 18291362 18295937 24236 - . gene_id "HERVFC1_Yq11.222b"; transcript_id "HERVFC1_Yq11.222b"; locus "HERVFC1_Yq11.222b"; repName "HERV-Fc1-int"; geneRegion "internal"; locid "HERV-Fc1-int_0007"; repClass "LTR"; repEnd "4629"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 18295938 18296280 2740 - . gene_id "HERVFC1_Yq11.222b"; transcript_id "HERVFC1_Yq11.222b"; locus "HERVFC1_Yq11.222b"; repName "HERV-Fc1_LTR1"; geneRegion "ltr"; locid "HERV-Fc1-int_0007"; repClass "LTR"; repEnd "346"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_Yq11.222b ### chrY rmsk gene 18381370 18386841 . + . gene_id "PRIMA41_Yq11.222b"; transcript_id "PRIMA41_Yq11.222b"; locus "PRIMA41_Yq11.222b"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0183"; model_cov "4835"; model_pct "62.3"; chrY rmsk exon 18381370 18381541 283 + . gene_id "PRIMA41_Yq11.222b"; transcript_id "PRIMA41_Yq11.222b"; locus "PRIMA41_Yq11.222b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0183"; repClass "LTR"; repEnd "1446"; repFamily "ERV1"; repLeft "-6310"; repStart "1269"; chrY rmsk exon 18381771 18384604 8775 + . gene_id "PRIMA41_Yq11.222b"; transcript_id "PRIMA41_Yq11.222b"; locus "PRIMA41_Yq11.222b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0183"; repClass "LTR"; repEnd "4518"; repFamily "ERV1"; repLeft "-3238"; repStart "1658"; chrY rmsk exon 18385279 18386236 8775 + . gene_id "PRIMA41_Yq11.222b"; transcript_id "PRIMA41_Yq11.222b"; locus "PRIMA41_Yq11.222b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0183"; repClass "LTR"; repEnd "5480"; repFamily "ERV1"; repLeft "-2276"; repStart "4519"; chrY rmsk exon 18386242 18386841 962 + . gene_id "PRIMA41_Yq11.222b"; transcript_id "PRIMA41_Yq11.222b"; locus "PRIMA41_Yq11.222b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0183"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "-1593"; repStart "5326"; ### LTR25_Yq11.222j ### chrY rmsk gene 18428231 18429102 . + . gene_id "LTR25_Yq11.222j"; transcript_id "LTR25_Yq11.222j"; locus "LTR25_Yq11.222j"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0188"; model_cov "905"; model_pct "12.6"; chrY rmsk exon 18428231 18429102 2863 + . gene_id "LTR25_Yq11.222j"; transcript_id "LTR25_Yq11.222j"; locus "LTR25_Yq11.222j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0188"; repClass "LTR"; repEnd "2441"; repFamily "ERV1"; repLeft "-4747"; repStart "1536"; ### HML6_Yq11.222g ### chrY rmsk gene 18429199 18431142 . + . gene_id "HML6_Yq11.222g"; transcript_id "HML6_Yq11.222g"; locus "HML6_Yq11.222g"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0111"; model_cov "1517"; model_pct "21.1"; chrY rmsk exon 18429199 18429478 1400 + . gene_id "HML6_Yq11.222g"; transcript_id "HML6_Yq11.222g"; locus "HML6_Yq11.222g"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0111"; repClass "LTR"; repEnd "3147"; repFamily "ERVK"; repLeft "-4055"; repStart "2868"; chrY rmsk exon 18429487 18430712 4486 + . gene_id "HML6_Yq11.222g"; transcript_id "HML6_Yq11.222g"; locus "HML6_Yq11.222g"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0111"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "5962"; chrY rmsk exon 18430716 18431142 1667 + . gene_id "HML6_Yq11.222g"; transcript_id "HML6_Yq11.222g"; locus "HML6_Yq11.222g"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0111"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "2"; ### LTR19_Yq11.222a ### chrY rmsk gene 18479425 18480456 . - . gene_id "LTR19_Yq11.222a"; transcript_id "LTR19_Yq11.222a"; locus "LTR19_Yq11.222a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0084"; model_cov "617"; model_pct "11.0"; chrY rmsk exon 18479425 18479718 1351 - . gene_id "LTR19_Yq11.222a"; transcript_id "LTR19_Yq11.222a"; locus "LTR19_Yq11.222a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0084"; repClass "LTR"; repEnd "-1513"; repFamily "ERV1"; repLeft "-1805"; repStart "-7099"; chrY rmsk exon 18479760 18480020 1428 - . gene_id "LTR19_Yq11.222a"; transcript_id "LTR19_Yq11.222a"; locus "LTR19_Yq11.222a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0084"; repClass "LTR"; repEnd "-1806"; repFamily "ERV1"; repLeft "-2131"; repStart "-7392"; chrY rmsk exon 18480021 18480348 1641 - . gene_id "LTR19_Yq11.222a"; transcript_id "LTR19_Yq11.222a"; locus "LTR19_Yq11.222a"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0084"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "238"; repStart "0"; chrY rmsk exon 18480350 18480456 702 - . gene_id "LTR19_Yq11.222a"; transcript_id "LTR19_Yq11.222a"; locus "LTR19_Yq11.222a"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0084"; repClass "LTR"; repEnd "107"; repFamily "ERV1"; repLeft "1"; repStart "-473"; ### HML3_Yq11.222a ### chrY rmsk gene 18555882 18559537 . - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0260"; model_cov "2909"; model_pct "48.3"; chrY rmsk exon 18555882 18556358 2915 - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0260"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 18556359 18556708 2131 - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0260"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5672"; repStart "0"; chrY rmsk exon 18556709 18558987 11432 - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0260"; repClass "LTR"; repEnd "5717"; repFamily "ERVK"; repLeft "3333"; repStart "-304"; chrY rmsk exon 18558986 18559160 898 - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0260"; repClass "LTR"; repEnd "177"; repFamily "ERVK"; repLeft "1"; repStart "-5844"; chrY rmsk exon 18559161 18559537 1954 - . gene_id "HML3_Yq11.222a"; transcript_id "HML3_Yq11.222a"; locus "HML3_Yq11.222a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0260"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "80"; repStart "0"; ### HERV3_Yq11.222a ### chrY rmsk gene 18566558 18568299 . - . gene_id "HERV3_Yq11.222a"; transcript_id "HERV3_Yq11.222a"; locus "HERV3_Yq11.222a"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0087"; model_cov "1189"; model_pct "14.1"; chrY rmsk exon 18566558 18567097 2598 - . gene_id "HERV3_Yq11.222a"; transcript_id "HERV3_Yq11.222a"; locus "HERV3_Yq11.222a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0087"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "43"; repStart "0"; chrY rmsk exon 18567145 18568299 42393 - . gene_id "HERV3_Yq11.222a"; transcript_id "HERV3_Yq11.222a"; locus "HERV3_Yq11.222a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0087"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "7237"; repStart "0"; ### HERV3_Yq11.222b ### chrY rmsk gene 18568411 18575269 . - . gene_id "HERV3_Yq11.222b"; transcript_id "HERV3_Yq11.222b"; locus "HERV3_Yq11.222b"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0088"; model_cov "7071"; model_pct "83.9"; chrY rmsk exon 18568411 18575269 42393 - . gene_id "HERV3_Yq11.222b"; transcript_id "HERV3_Yq11.222b"; locus "HERV3_Yq11.222b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0088"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "1355"; repStart "0"; ### HERV3_Yq11.222c ### chrY rmsk gene 18589478 18598213 . - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0089"; model_cov "6429"; model_pct "76.3"; chrY rmsk exon 18589478 18589963 1723 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "72"; repStart "0"; chrY rmsk exon 18590002 18590134 515 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "8418"; repFamily "ERV1"; repLeft "8287"; repStart "-8"; chrY rmsk exon 18590233 18591401 3323 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "6306"; repFamily "ERV1"; repLeft "5095"; repStart "-2120"; chrY rmsk exon 18592448 18595398 17387 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "5099"; repFamily "ERV1"; repLeft "2137"; repStart "-3327"; chrY rmsk exon 18595425 18595476 17387 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "2136"; repFamily "ERV1"; repLeft "2077"; repStart "-6290"; chrY rmsk exon 18595509 18597635 17387 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "2076"; repFamily "ERV1"; repLeft "10"; repStart "-6350"; chrY rmsk exon 18597645 18598213 1517 - . gene_id "HERV3_Yq11.222c"; transcript_id "HERV3_Yq11.222c"; locus "HERV3_Yq11.222c"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0089"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "55"; repStart "0"; ### HUERSP3B_Yq11.222a ### chrY rmsk gene 18614902 18620654 . + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0150"; model_cov "4413"; model_pct "59.5"; chrY rmsk exon 18614902 18615512 3199 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "2"; chrY rmsk exon 18615513 18615943 797 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "-6912"; repStart "1"; chrY rmsk exon 18615990 18616785 3176 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "1546"; repFamily "ERV1"; repLeft "-5872"; repStart "764"; chrY rmsk exon 18617210 18617491 1621 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "1823"; repFamily "ERV1"; repLeft "-5595"; repStart "1538"; chrY rmsk exon 18617605 18618294 4167 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "2632"; repFamily "ERV1"; repLeft "-4786"; repStart "1939"; chrY rmsk exon 18618737 18619448 3363 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "3794"; repFamily "ERV1"; repLeft "-3624"; repStart "3081"; chrY rmsk exon 18619445 18620654 3387 + . gene_id "HUERSP3B_Yq11.222a"; transcript_id "HUERSP3B_Yq11.222a"; locus "HUERSP3B_Yq11.222a"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0150"; repClass "LTR"; repEnd "5371"; repFamily "ERV1"; repLeft "-2047"; repStart "3936"; ### HERVK14C_Yq11.222c ### chrY rmsk gene 18622526 18626968 . - . gene_id "HERVK14C_Yq11.222c"; transcript_id "HERVK14C_Yq11.222c"; locus "HERVK14C_Yq11.222c"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0033"; model_cov "3356"; model_pct "45.1"; chrY rmsk exon 18622526 18623112 4187 - . gene_id "HERVK14C_Yq11.222c"; transcript_id "HERVK14C_Yq11.222c"; locus "HERVK14C_Yq11.222c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0033"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 18623113 18624847 12942 - . gene_id "HERVK14C_Yq11.222c"; transcript_id "HERVK14C_Yq11.222c"; locus "HERVK14C_Yq11.222c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0033"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "5652"; repStart "0"; chrY rmsk exon 18624833 18626364 7814 - . gene_id "HERVK14C_Yq11.222c"; transcript_id "HERVK14C_Yq11.222c"; locus "HERVK14C_Yq11.222c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0033"; repClass "LTR"; repEnd "1577"; repFamily "ERVK"; repLeft "3"; repStart "-5857"; chrY rmsk exon 18626367 18626968 4049 - . gene_id "HERVK14C_Yq11.222c"; transcript_id "HERVK14C_Yq11.222c"; locus "HERVK14C_Yq11.222c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0033"; repClass "LTR"; repEnd "584"; repFamily "ERVK"; repLeft "1"; repStart "-3"; ### HUERSP3B_Yq11.222b ### chrY rmsk gene 18629650 18638105 . + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; category "prototype"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0152"; model_cov "6011"; model_pct "81.0"; chrY rmsk exon 18629650 18630292 3284 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "4"; chrY rmsk exon 18630769 18631635 3118 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "146"; repFamily "ERV1"; repLeft "-7272"; repStart "-759"; chrY rmsk exon 18631674 18631701 2924 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "182"; repFamily "ERV1"; repLeft "-7236"; repStart "147"; chrY rmsk exon 18631982 18633079 6356 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "1539"; chrY rmsk exon 18633510 18633742 2291 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-4106"; repStart "3073"; chrY rmsk exon 18634053 18634544 2291 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "3794"; repFamily "ERV1"; repLeft "-3624"; repStart "3313"; chrY rmsk exon 18634528 18636394 9743 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "6244"; repFamily "ERV1"; repLeft "-1174"; repStart "4166"; chrY rmsk exon 18636432 18637481 9743 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "7415"; repFamily "ERV1"; repLeft "-3"; repStart "6245"; chrY rmsk exon 18637492 18638105 3327 + . gene_id "HUERSP3B_Yq11.222b"; transcript_id "HUERSP3B_Yq11.222b"; locus "HUERSP3B_Yq11.222b"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0152"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK14C_Yq11.222d ### chrY rmsk gene 18666469 18672374 . + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0034"; model_cov "4728"; model_pct "63.6"; chrY rmsk exon 18666469 18667052 3688 + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0034"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 18667053 18668823 12438 + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0034"; repClass "LTR"; repEnd "1779"; repFamily "ERVK"; repLeft "-5655"; repStart "1"; chrY rmsk exon 18668821 18670684 13740 + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0034"; repClass "LTR"; repEnd "3755"; repFamily "ERVK"; repLeft "-3679"; repStart "1902"; chrY rmsk exon 18670679 18671787 7492 + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0034"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "6337"; chrY rmsk exon 18671788 18672374 4256 + . gene_id "HERVK14C_Yq11.222d"; transcript_id "HERVK14C_Yq11.222d"; locus "HERVK14C_Yq11.222d"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0034"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP3B_Yq11.222c ### chrY rmsk gene 18684006 18688726 . - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; category "internal"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0154"; model_cov "3763"; model_pct "50.7"; chrY rmsk exon 18684006 18685332 9144 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "6694"; repFamily "ERV1"; repLeft "5320"; repStart "-724"; chrY rmsk exon 18685325 18685872 2207 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "4493"; repFamily "ERV1"; repLeft "3936"; repStart "-2925"; chrY rmsk exon 18685856 18686347 2913 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "3794"; repFamily "ERV1"; repLeft "3350"; repStart "-3624"; chrY rmsk exon 18686658 18686901 2913 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "3349"; repFamily "ERV1"; repLeft "3062"; repStart "-4069"; chrY rmsk exon 18687321 18688418 8550 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "1541"; repStart "-4776"; chrY rmsk exon 18688699 18688726 8550 - . gene_id "HUERSP3B_Yq11.222c"; transcript_id "HUERSP3B_Yq11.222c"; locus "HUERSP3B_Yq11.222c"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0154"; repClass "LTR"; repEnd "1540"; repFamily "ERV1"; repLeft "1540"; repStart "-5878"; ### HUERSP3B_Yq11.222d ### chrY rmsk gene 18688833 18690750 . - . gene_id "HUERSP3B_Yq11.222d"; transcript_id "HUERSP3B_Yq11.222d"; locus "HUERSP3B_Yq11.222d"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0155"; model_cov "1279"; model_pct "17.2"; chrY rmsk exon 18688833 18689631 8550 - . gene_id "HUERSP3B_Yq11.222d"; transcript_id "HUERSP3B_Yq11.222d"; locus "HUERSP3B_Yq11.222d"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0155"; repClass "LTR"; repEnd "1540"; repFamily "ERV1"; repLeft "764"; repStart "-5878"; chrY rmsk exon 18689680 18690107 758 - . gene_id "HUERSP3B_Yq11.222d"; transcript_id "HUERSP3B_Yq11.222d"; locus "HUERSP3B_Yq11.222d"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0155"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "1"; repStart "-6914"; chrY rmsk exon 18690108 18690750 3171 - . gene_id "HUERSP3B_Yq11.222d"; transcript_id "HUERSP3B_Yq11.222d"; locus "HUERSP3B_Yq11.222d"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0155"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "4"; repStart "0"; ### HERVK14C_Yq11.222e ### chrY rmsk gene 18693432 18697874 . + . gene_id "HERVK14C_Yq11.222e"; transcript_id "HERVK14C_Yq11.222e"; locus "HERVK14C_Yq11.222e"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0035"; model_cov "3356"; model_pct "45.1"; chrY rmsk exon 18693432 18694033 4065 + . gene_id "HERVK14C_Yq11.222e"; transcript_id "HERVK14C_Yq11.222e"; locus "HERVK14C_Yq11.222e"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0035"; repClass "LTR"; repEnd "584"; repFamily "ERVK"; repLeft "-3"; repStart "1"; chrY rmsk exon 18694036 18695567 7409 + . gene_id "HERVK14C_Yq11.222e"; transcript_id "HERVK14C_Yq11.222e"; locus "HERVK14C_Yq11.222e"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0035"; repClass "LTR"; repEnd "1577"; repFamily "ERVK"; repLeft "-5857"; repStart "3"; chrY rmsk exon 18695553 18697287 12320 + . gene_id "HERVK14C_Yq11.222e"; transcript_id "HERVK14C_Yq11.222e"; locus "HERVK14C_Yq11.222e"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0035"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "0"; repStart "5652"; chrY rmsk exon 18697288 18697874 4206 + . gene_id "HERVK14C_Yq11.222e"; transcript_id "HERVK14C_Yq11.222e"; locus "HERVK14C_Yq11.222e"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0035"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP3B_Yq11.222e ### chrY rmsk gene 18699746 18705500 . - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0156"; model_cov "4247"; model_pct "57.3"; chrY rmsk exon 18699746 18700432 3196 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "5371"; repFamily "ERV1"; repLeft "4691"; repStart "-2047"; chrY rmsk exon 18700425 18700955 2030 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "4493"; repFamily "ERV1"; repLeft "3936"; repStart "-2925"; chrY rmsk exon 18700952 18701678 3178 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "3794"; repFamily "ERV1"; repLeft "3062"; repStart "-3624"; chrY rmsk exon 18702093 18702795 3979 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "2645"; repFamily "ERV1"; repLeft "1939"; repStart "-4773"; chrY rmsk exon 18702909 18703190 1525 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "1823"; repFamily "ERV1"; repLeft "1538"; repStart "-5595"; chrY rmsk exon 18703617 18704412 2923 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "1546"; repFamily "ERV1"; repLeft "764"; repStart "-5872"; chrY rmsk exon 18704459 18704889 720 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "506"; repFamily "ERV1"; repLeft "1"; repStart "-6912"; chrY rmsk exon 18704890 18705500 3205 - . gene_id "HUERSP3B_Yq11.222e"; transcript_id "HUERSP3B_Yq11.222e"; locus "HUERSP3B_Yq11.222e"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0156"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "2"; repStart "0"; ### HERV3_Yq11.222d ### chrY rmsk gene 18722189 18730925 . + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0090"; model_cov "6649"; model_pct "78.9"; chrY rmsk exon 18722189 18722757 1517 + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0090"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "55"; chrY rmsk exon 18722767 18727955 11552 + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0090"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "-3484"; repStart "-365"; chrY rmsk exon 18729002 18730170 3323 + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0090"; repClass "LTR"; repEnd "6306"; repFamily "ERV1"; repLeft "-2120"; repStart "5095"; chrY rmsk exon 18730269 18730401 515 + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0090"; repClass "LTR"; repEnd "8418"; repFamily "ERV1"; repLeft "-8"; repStart "8287"; chrY rmsk exon 18730440 18730925 1723 + . gene_id "HERV3_Yq11.222d"; transcript_id "HERV3_Yq11.222d"; locus "HERV3_Yq11.222d"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0090"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "72"; ### HERV3_Yq11.222e ### chrY rmsk gene 18745134 18753845 . + . gene_id "HERV3_Yq11.222e"; transcript_id "HERV3_Yq11.222e"; locus "HERV3_Yq11.222e"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0091"; model_cov "8260"; model_pct "98.0"; chrY rmsk exon 18745134 18751992 42398 + . gene_id "HERV3_Yq11.222e"; transcript_id "HERV3_Yq11.222e"; locus "HERV3_Yq11.222e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0091"; repClass "LTR"; repEnd "7234"; repFamily "ERV1"; repLeft "-1192"; repStart "165"; chrY rmsk exon 18752104 18753258 42398 + . gene_id "HERV3_Yq11.222e"; transcript_id "HERV3_Yq11.222e"; locus "HERV3_Yq11.222e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0091"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "7235"; chrY rmsk exon 18753306 18753845 2598 + . gene_id "HERV3_Yq11.222e"; transcript_id "HERV3_Yq11.222e"; locus "HERV3_Yq11.222e"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0091"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "43"; ### HML3_Yq11.222b ### chrY rmsk gene 18760865 18764520 . + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0261"; model_cov "2909"; model_pct "48.3"; chrY rmsk exon 18760865 18761241 1954 + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0261"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "80"; chrY rmsk exon 18761242 18761416 898 + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0261"; repClass "LTR"; repEnd "177"; repFamily "ERVK"; repLeft "-5844"; repStart "1"; chrY rmsk exon 18761415 18763693 11432 + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0261"; repClass "LTR"; repEnd "5717"; repFamily "ERVK"; repLeft "-304"; repStart "3333"; chrY rmsk exon 18763694 18764043 2131 + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0261"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5672"; chrY rmsk exon 18764044 18764520 2915 + . gene_id "HML3_Yq11.222b"; transcript_id "HML3_Yq11.222b"; locus "HML3_Yq11.222b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0261"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR19_Yq11.222b ### chrY rmsk gene 18839944 18840975 . + . gene_id "LTR19_Yq11.222b"; transcript_id "LTR19_Yq11.222b"; locus "LTR19_Yq11.222b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0085"; model_cov "617"; model_pct "11.0"; chrY rmsk exon 18839944 18840050 702 + . gene_id "LTR19_Yq11.222b"; transcript_id "LTR19_Yq11.222b"; locus "LTR19_Yq11.222b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0085"; repClass "LTR"; repEnd "107"; repFamily "ERV1"; repLeft "-473"; repStart "1"; chrY rmsk exon 18840052 18840379 1641 + . gene_id "LTR19_Yq11.222b"; transcript_id "LTR19_Yq11.222b"; locus "LTR19_Yq11.222b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0085"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "0"; repStart "238"; chrY rmsk exon 18840380 18840640 1428 + . gene_id "LTR19_Yq11.222b"; transcript_id "LTR19_Yq11.222b"; locus "LTR19_Yq11.222b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0085"; repClass "LTR"; repEnd "-1806"; repFamily "ERV1"; repLeft "-7392"; repStart "-2131"; chrY rmsk exon 18840682 18840975 1351 + . gene_id "LTR19_Yq11.222b"; transcript_id "LTR19_Yq11.222b"; locus "LTR19_Yq11.222b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0085"; repClass "LTR"; repEnd "-1513"; repFamily "ERV1"; repLeft "-7099"; repStart "-1805"; ### HERVH_Yq11.222c ### chrY rmsk gene 18944924 18948358 . - . gene_id "HERVH_Yq11.222c"; transcript_id "HERVH_Yq11.222c"; locus "HERVH_Yq11.222c"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1315"; model_cov "2900"; model_pct "37.6"; chrY rmsk exon 18944924 18945371 2535 - . gene_id "HERVH_Yq11.222c"; transcript_id "HERVH_Yq11.222c"; locus "HERVH_Yq11.222c"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1315"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 18945372 18945987 2828 - . gene_id "HERVH_Yq11.222c"; transcript_id "HERVH_Yq11.222c"; locus "HERVH_Yq11.222c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1315"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7157"; repStart "0"; chrY rmsk exon 18945981 18948358 13384 - . gene_id "HERVH_Yq11.222c"; transcript_id "HERVH_Yq11.222c"; locus "HERVH_Yq11.222c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1315"; repClass "LTR"; repEnd "6016"; repFamily "ERV1"; repLeft "3672"; repStart "-1697"; ### HERVIP10FH_Yq11.222b ### chrY rmsk gene 19039202 19042102 . - . gene_id "HERVIP10FH_Yq11.222b"; transcript_id "HERVIP10FH_Yq11.222b"; locus "HERVIP10FH_Yq11.222b"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0225"; model_cov "1858"; model_pct "36.4"; chrY rmsk exon 19039202 19040805 5479 - . gene_id "HERVIP10FH_Yq11.222b"; transcript_id "HERVIP10FH_Yq11.222b"; locus "HERVIP10FH_Yq11.222b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0225"; repClass "LTR"; repEnd "2317"; repFamily "ERV1"; repLeft "624"; repStart "-2785"; chrY rmsk exon 19041068 19041243 465 - . gene_id "HERVIP10FH_Yq11.222b"; transcript_id "HERVIP10FH_Yq11.222b"; locus "HERVIP10FH_Yq11.222b"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0225"; repClass "LTR"; repEnd "-2000"; repFamily "ERV1"; repLeft "-2165"; repStart "-7102"; chrY rmsk exon 19041626 19042102 2750 - . gene_id "HERVIP10FH_Yq11.222b"; transcript_id "HERVIP10FH_Yq11.222b"; locus "HERVIP10FH_Yq11.222b"; repName "LTR10F"; geneRegion "ltr"; locid "HERVIP10FH-int_0225"; repClass "LTR"; repEnd "504"; repFamily "ERV1"; repLeft "1"; repStart "-7"; ### HERVW_Yq11.222b ### chrY rmsk gene 19079938 19087497 . + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0327"; model_cov "5900"; model_pct "68.4"; chrY rmsk exon 19079938 19080693 5344 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "-1"; repStart "2"; chrY rmsk exon 19080695 19082649 8709 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "2016"; repFamily "ERV1"; repLeft "-6610"; repStart "1"; chrY rmsk exon 19082633 19084489 22258 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "4354"; repFamily "ERV1"; repLeft "-4272"; repStart "2430"; chrY rmsk exon 19084775 19086440 22258 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "6019"; repFamily "ERV1"; repLeft "-2607"; repStart "4355"; chrY rmsk exon 19086452 19086746 2093 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "8329"; chrY rmsk exon 19086747 19087497 5304 + . gene_id "HERVW_Yq11.222b"; transcript_id "HERVW_Yq11.222b"; locus "HERVW_Yq11.222b"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0327"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV9_Yq11.222c ### chrY rmsk gene 19100345 19106643 . - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0220"; model_cov "5835"; model_pct "69.2"; chrY rmsk exon 19100345 19100827 2621 - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0220"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 19100828 19101731 5662 - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0220"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "7562"; repStart "0"; chrY rmsk exon 19101729 19101751 21501 - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0220"; repClass "LTR"; repEnd "7413"; repFamily "ERV1"; repLeft "7382"; repStart "-1023"; chrY rmsk exon 19101781 19104831 21501 - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0220"; repClass "LTR"; repEnd "7381"; repFamily "ERV1"; repLeft "4256"; repStart "-1055"; chrY rmsk exon 19104829 19106643 12705 - . gene_id "HERV9_Yq11.222c"; transcript_id "HERV9_Yq11.222c"; locus "HERV9_Yq11.222c"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0220"; repClass "LTR"; repEnd "3958"; repFamily "ERV1"; repLeft "2153"; repStart "-4478"; ### HERV9_Yq11.222d ### chrY rmsk gene 19106673 19108332 . - . gene_id "HERV9_Yq11.222d"; transcript_id "HERV9_Yq11.222d"; locus "HERV9_Yq11.222d"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0221"; model_cov "1648"; model_pct "19.5"; chrY rmsk exon 19106673 19108332 10887 - . gene_id "HERV9_Yq11.222d"; transcript_id "HERV9_Yq11.222d"; locus "HERV9_Yq11.222d"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0221"; repClass "LTR"; repEnd "5206"; repFamily "ERV1"; repLeft "3558"; repStart "-3230"; ### HERV9_Yq11.222e ### chrY rmsk gene 19131609 19140818 . + . gene_id "HERV9_Yq11.222e"; transcript_id "HERV9_Yq11.222e"; locus "HERV9_Yq11.222e"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0222"; model_cov "8378"; model_pct "99.3"; chrY rmsk exon 19131609 19132068 2507 + . gene_id "HERV9_Yq11.222e"; transcript_id "HERV9_Yq11.222e"; locus "HERV9_Yq11.222e"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0222"; repClass "LTR"; repEnd "1004"; repFamily "ERV1"; repLeft "-250"; repStart "522"; chrY rmsk exon 19132096 19140300 28696 + . gene_id "HERV9_Yq11.222e"; transcript_id "HERV9_Yq11.222e"; locus "HERV9_Yq11.222e"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0222"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "58"; chrY rmsk exon 19140339 19140818 3121 + . gene_id "HERV9_Yq11.222e"; transcript_id "HERV9_Yq11.222e"; locus "HERV9_Yq11.222e"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0222"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_Yq11.222 ### chrY rmsk gene 19140819 19143790 . + . gene_id "HERVIP10F_Yq11.222"; transcript_id "HERVIP10F_Yq11.222"; locus "HERVIP10F_Yq11.222"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0130"; model_cov "2510"; model_pct "32.4"; chrY rmsk exon 19140819 19140861 283 + . gene_id "HERVIP10F_Yq11.222"; transcript_id "HERVIP10F_Yq11.222"; locus "HERVIP10F_Yq11.222"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0130"; repClass "LTR"; repEnd "4939"; repFamily "ERV1"; repLeft "-2798"; repStart "4897"; chrY rmsk exon 19140915 19143349 9014 + . gene_id "HERVIP10F_Yq11.222"; transcript_id "HERVIP10F_Yq11.222"; locus "HERVIP10F_Yq11.222"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0130"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "0"; repStart "5269"; chrY rmsk exon 19143350 19143790 1604 + . gene_id "HERVIP10F_Yq11.222"; transcript_id "HERVIP10F_Yq11.222"; locus "HERVIP10F_Yq11.222"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVIP10F-int_0130"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_Yq11.222 ### chrY rmsk gene 19233120 19235385 . + . gene_id "HUERSP2_Yq11.222"; transcript_id "HUERSP2_Yq11.222"; locus "HUERSP2_Yq11.222"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0131"; model_cov "1539"; model_pct "49.8"; chrY rmsk exon 19233120 19234598 8065 + . gene_id "HUERSP2_Yq11.222"; transcript_id "HUERSP2_Yq11.222"; locus "HUERSP2_Yq11.222"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0131"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "1549"; chrY rmsk exon 19234599 19235385 3393 + . gene_id "HUERSP2_Yq11.222"; transcript_id "HUERSP2_Yq11.222"; locus "HUERSP2_Yq11.222"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0131"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVFRD_Yq11.222a ### chrY rmsk gene 19261641 19262747 . - . gene_id "HERVFRD_Yq11.222a"; transcript_id "HERVFRD_Yq11.222a"; locus "HERVFRD_Yq11.222a"; category "internal"; intModel "MER50-int"; locid "MER50-int_0230"; model_cov "1110"; model_pct "15.4"; chrY rmsk exon 19261641 19262747 674 - . gene_id "HERVFRD_Yq11.222a"; transcript_id "HERVFRD_Yq11.222a"; locus "HERVFRD_Yq11.222a"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0230"; repClass "LTR"; repEnd "6261"; repFamily "ERV1"; repLeft "5151"; repStart "-944"; ### MER41_Yq11.222 ### chrY rmsk gene 19263020 19263861 . - . gene_id "MER41_Yq11.222"; transcript_id "MER41_Yq11.222"; locus "MER41_Yq11.222"; category "internal"; intModel "MER41-int"; locid "MER41-int_0640"; model_cov "823"; model_pct "13.8"; chrY rmsk exon 19263020 19263358 1160 - . gene_id "MER41_Yq11.222"; transcript_id "MER41_Yq11.222"; locus "MER41_Yq11.222"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0640"; repClass "LTR"; repEnd "4817"; repFamily "ERV1"; repLeft "4488"; repStart "-1129"; chrY rmsk exon 19263366 19263861 2344 - . gene_id "MER41_Yq11.222"; transcript_id "MER41_Yq11.222"; locus "MER41_Yq11.222"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0640"; repClass "LTR"; repEnd "5106"; repFamily "ERV1"; repLeft "4612"; repStart "-840"; ### HERVFRD_Yq11.222b ### chrY rmsk gene 19270628 19272535 . + . gene_id "HERVFRD_Yq11.222b"; transcript_id "HERVFRD_Yq11.222b"; locus "HERVFRD_Yq11.222b"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0231"; model_cov "1346"; model_pct "18.7"; chrY rmsk exon 19270628 19271322 2762 + . gene_id "HERVFRD_Yq11.222b"; transcript_id "HERVFRD_Yq11.222b"; locus "HERVFRD_Yq11.222b"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0231"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "-23"; repStart "1"; chrY rmsk exon 19271324 19272535 4507 + . gene_id "HERVFRD_Yq11.222b"; transcript_id "HERVFRD_Yq11.222b"; locus "HERVFRD_Yq11.222b"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0231"; repClass "LTR"; repEnd "1347"; repFamily "ERV1"; repLeft "-5858"; repStart "1"; ### PRIMA4_Yq11.222a ### chrY rmsk gene 19288997 19292129 . - . gene_id "PRIMA4_Yq11.222a"; transcript_id "PRIMA4_Yq11.222a"; locus "PRIMA4_Yq11.222a"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0260"; model_cov "2758"; model_pct "33.3"; chrY rmsk exon 19288997 19289147 861 - . gene_id "PRIMA4_Yq11.222a"; transcript_id "PRIMA4_Yq11.222a"; locus "PRIMA4_Yq11.222a"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0260"; repClass "LTR"; repEnd "151"; repFamily "ERV1"; repLeft "2"; repStart "-443"; chrY rmsk exon 19289159 19289457 994 - . gene_id "PRIMA4_Yq11.222a"; transcript_id "PRIMA4_Yq11.222a"; locus "PRIMA4_Yq11.222a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0260"; repClass "LTR"; repEnd "8260"; repFamily "ERV1"; repLeft "7996"; repStart "-10"; chrY rmsk exon 19289562 19289860 1697 - . gene_id "PRIMA4_Yq11.222a"; transcript_id "PRIMA4_Yq11.222a"; locus "PRIMA4_Yq11.222a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0260"; repClass "LTR"; repEnd "7980"; repFamily "ERV1"; repLeft "7670"; repStart "-290"; chrY rmsk exon 19290037 19292129 17624 - . gene_id "PRIMA4_Yq11.222a"; transcript_id "PRIMA4_Yq11.222a"; locus "PRIMA4_Yq11.222a"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0260"; repClass "LTR"; repEnd "5916"; repFamily "ERV1"; repLeft "3732"; repStart "-2354"; ### PRIMA4_Yq11.222b ### chrY rmsk gene 19292224 19293198 . - . gene_id "PRIMA4_Yq11.222b"; transcript_id "PRIMA4_Yq11.222b"; locus "PRIMA4_Yq11.222b"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0262"; model_cov "1019"; model_pct "12.3"; chrY rmsk exon 19292224 19293198 17624 - . gene_id "PRIMA4_Yq11.222b"; transcript_id "PRIMA4_Yq11.222b"; locus "PRIMA4_Yq11.222b"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0262"; repClass "LTR"; repEnd "5916"; repFamily "ERV1"; repLeft "4897"; repStart "-2354"; ### HML3_Yq11.222c ### chrY rmsk gene 19293251 19298279 . + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0262"; model_cov "4281"; model_pct "71.1"; chrY rmsk exon 19293251 19293455 1472 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "205"; repFamily "ERVK"; repLeft "-307"; repStart "1"; chrY rmsk exon 19293454 19293563 715 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "403"; chrY rmsk exon 19293564 19296003 17578 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "-3540"; repStart "1"; chrY rmsk exon 19296003 19296134 1012 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "-3224"; repStart "2666"; chrY rmsk exon 19296136 19296366 1871 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "-2068"; repStart "3722"; chrY rmsk exon 19296353 19297770 10323 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "4582"; chrY rmsk exon 19297771 19298279 3281 + . gene_id "HML3_Yq11.222c"; transcript_id "HML3_Yq11.222c"; locus "HML3_Yq11.222c"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0262"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### PRIMA4_Yq11.222c ### chrY rmsk gene 19298281 19300467 . - . gene_id "PRIMA4_Yq11.222c"; transcript_id "PRIMA4_Yq11.222c"; locus "PRIMA4_Yq11.222c"; category "oneside"; intModel "PRIMA4-int"; locid "PRIMA4-int_0263"; model_cov "1826"; model_pct "22.1"; chrY rmsk exon 19298281 19298376 547 - . gene_id "PRIMA4_Yq11.222c"; transcript_id "PRIMA4_Yq11.222c"; locus "PRIMA4_Yq11.222c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0263"; repClass "LTR"; repEnd "1953"; repFamily "ERV1"; repLeft "1858"; repStart "-6317"; chrY rmsk exon 19298377 19299986 8810 - . gene_id "PRIMA4_Yq11.222c"; transcript_id "PRIMA4_Yq11.222c"; locus "PRIMA4_Yq11.222c"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0263"; repClass "LTR"; repEnd "1732"; repFamily "ERV1"; repLeft "1"; repStart "-6538"; chrY rmsk exon 19299987 19300467 1946 - . gene_id "PRIMA4_Yq11.222c"; transcript_id "PRIMA4_Yq11.222c"; locus "PRIMA4_Yq11.222c"; repName "PRIMA4_LTR"; geneRegion "ltr"; locid "PRIMA4-int_0263"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "20"; repStart "0"; ### LTR25_Yq11.222k ### chrY rmsk gene 19317305 19323420 . + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; category "prototype"; intModel "LTR25-int"; locid "LTR25-int_0191"; model_cov "3718"; model_pct "51.7"; chrY rmsk exon 19317305 19318028 2551 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-3"; repStart "8"; chrY rmsk exon 19318032 19318134 435 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "94"; repFamily "ERV1"; repLeft "-7094"; repStart "1"; chrY rmsk exon 19318133 19319877 8512 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "2041"; repFamily "ERV1"; repLeft "-5147"; repStart "262"; chrY rmsk exon 19319875 19320835 3954 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "1966"; repFamily "ERV1"; repLeft "-5222"; repStart "993"; chrY rmsk exon 19321718 19322584 3277 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "2859"; repFamily "ERV1"; repLeft "-4329"; repStart "1986"; chrY rmsk exon 19322620 19323420 3580 + . gene_id "LTR25_Yq11.222k"; transcript_id "LTR25_Yq11.222k"; locus "LTR25_Yq11.222k"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0191"; repClass "LTR"; repEnd "843"; repFamily "ERV1"; repLeft "-1"; repStart "8"; ### HERVH_Yq11.222d ### chrY rmsk gene 19419025 19427738 . + . gene_id "HERVH_Yq11.222d"; transcript_id "HERVH_Yq11.222d"; locus "HERVH_Yq11.222d"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1318"; model_cov "7589"; model_pct "98.4"; chrY rmsk exon 19419025 19427239 24462 + . gene_id "HERVH_Yq11.222d"; transcript_id "HERVH_Yq11.222d"; locus "HERVH_Yq11.222d"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1318"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "124"; chrY rmsk exon 19427240 19427738 3261 + . gene_id "HERVH_Yq11.222d"; transcript_id "HERVH_Yq11.222d"; locus "HERVH_Yq11.222d"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1318"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HUERSP3_Yq11.222c ### chrY rmsk gene 19428063 19434295 . - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0247"; model_cov "4641"; model_pct "52.0"; chrY rmsk exon 19428063 19428716 2755 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 19428717 19428977 1104 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8659"; repStart "0"; chrY rmsk exon 19429505 19430320 3166 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "6962"; repFamily "ERV1"; repLeft "6162"; repStart "-1957"; chrY rmsk exon 19430306 19430964 3386 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "5577"; repFamily "ERV1"; repLeft "4901"; repStart "-3342"; chrY rmsk exon 19430967 19431068 526 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4584"; repStart "-4238"; chrY rmsk exon 19431127 19433278 6297 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "753"; repStart "-5635"; chrY rmsk exon 19433347 19433621 1057 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "541"; repFamily "ERV1"; repLeft "264"; repStart "-8378"; chrY rmsk exon 19433728 19434295 2689 - . gene_id "HUERSP3_Yq11.222c"; transcript_id "HUERSP3_Yq11.222c"; locus "HUERSP3_Yq11.222c"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0247"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "61"; repStart "0"; ### PABLA_Yq11.222 ### chrY rmsk gene 19444132 19446723 . + . gene_id "PABLA_Yq11.222"; transcript_id "PABLA_Yq11.222"; locus "PABLA_Yq11.222"; category "prototype"; intModel "PABL_A-int"; locid "PABL_A-int_0173"; model_cov "1273"; model_pct "25.4"; chrY rmsk exon 19444132 19444759 4025 + . gene_id "PABLA_Yq11.222"; transcript_id "PABLA_Yq11.222"; locus "PABLA_Yq11.222"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0173"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "26"; chrY rmsk exon 19444824 19444950 652 + . gene_id "PABLA_Yq11.222"; transcript_id "PABLA_Yq11.222"; locus "PABLA_Yq11.222"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0173"; repClass "LTR"; repEnd "241"; repFamily "ERV1"; repLeft "-4774"; repStart "115"; chrY rmsk exon 19444955 19445992 5273 + . gene_id "PABLA_Yq11.222"; transcript_id "PABLA_Yq11.222"; locus "PABLA_Yq11.222"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0173"; repClass "LTR"; repEnd "4950"; repFamily "ERV1"; repLeft "-65"; repStart "3803"; chrY rmsk exon 19446038 19446723 3886 + . gene_id "PABLA_Yq11.222"; transcript_id "PABLA_Yq11.222"; locus "PABLA_Yq11.222"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0173"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVI_Yq11.222 ### chrY rmsk gene 19447126 19449030 . + . gene_id "HERVI_Yq11.222"; transcript_id "HERVI_Yq11.222"; locus "HERVI_Yq11.222"; category "oneside"; intModel "HERVI-int"; locid "HERVI-int_0042"; model_cov "1460"; model_pct "18.8"; chrY rmsk exon 19447126 19447600 1958 + . gene_id "HERVI_Yq11.222"; transcript_id "HERVI_Yq11.222"; locus "HERVI_Yq11.222"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0042"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "-20"; repStart "23"; chrY rmsk exon 19447628 19449030 3363 + . gene_id "HERVI_Yq11.222"; transcript_id "HERVI_Yq11.222"; locus "HERVI_Yq11.222"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0042"; repClass "LTR"; repEnd "1486"; repFamily "ERV1"; repLeft "-6299"; repStart "26"; ### HUERSP1_Yq11.222c ### chrY rmsk gene 19452523 19453607 . + . gene_id "HUERSP1_Yq11.222c"; transcript_id "HUERSP1_Yq11.222c"; locus "HUERSP1_Yq11.222c"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0239"; model_cov "1075"; model_pct "17.2"; chrY rmsk exon 19452523 19453607 6424 + . gene_id "HUERSP1_Yq11.222c"; transcript_id "HUERSP1_Yq11.222c"; locus "HUERSP1_Yq11.222c"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0239"; repClass "LTR"; repEnd "1720"; repFamily "ERV1"; repLeft "-4543"; repStart "645"; ### HML3_Yq11.223a ### chrY rmsk gene 19656546 19660306 . - . gene_id "HML3_Yq11.223a"; transcript_id "HML3_Yq11.223a"; locus "HML3_Yq11.223a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0263"; model_cov "3302"; model_pct "54.8"; chrY rmsk exon 19656546 19658902 17929 - . gene_id "HML3_Yq11.223a"; transcript_id "HML3_Yq11.223a"; locus "HML3_Yq11.223a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0263"; repClass "LTR"; repEnd "5609"; repFamily "ERVK"; repLeft "3244"; repStart "-412"; chrY rmsk exon 19658906 19659169 1912 - . gene_id "HML3_Yq11.223a"; transcript_id "HML3_Yq11.223a"; locus "HML3_Yq11.223a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0263"; repClass "LTR"; repEnd "1901"; repFamily "ERVK"; repLeft "1637"; repStart "-4120"; chrY rmsk exon 19659170 19659827 4574 - . gene_id "HML3_Yq11.223a"; transcript_id "HML3_Yq11.223a"; locus "HML3_Yq11.223a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0263"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "1"; repStart "-5347"; chrY rmsk exon 19659828 19660306 3363 - . gene_id "HML3_Yq11.223a"; transcript_id "HML3_Yq11.223a"; locus "HML3_Yq11.223a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0263"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVIP10F_Yq11.223 ### chrY rmsk gene 19809366 19817999 . - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0131"; model_cov "6840"; model_pct "88.4"; chrY rmsk exon 19809366 19809874 3507 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "LTR10D"; geneRegion "ltr"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "512"; repFamily "ERV1"; repLeft "3"; repStart "-1"; chrY rmsk exon 19809907 19811974 11311 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "7710"; repFamily "ERV1"; repLeft "5660"; repStart "-27"; chrY rmsk exon 19811973 19813380 19885 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "4815"; repFamily "ERV1"; repLeft "3431"; repStart "-2922"; chrY rmsk exon 19813650 19816083 19885 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "3430"; repFamily "ERV1"; repLeft "985"; repStart "-4307"; chrY rmsk exon 19816485 19817460 1239 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "962"; repFamily "ERV1"; repLeft "1"; repStart "-6775"; chrY rmsk exon 19817474 19817999 3734 - . gene_id "HERVIP10F_Yq11.223"; transcript_id "HERVIP10F_Yq11.223"; locus "HERVIP10F_Yq11.223"; repName "LTR10D"; geneRegion "ltr"; locid "HERVIP10F-int_0131"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_Yq11.223a ### chrY rmsk gene 19830872 19834053 . - . gene_id "LTR25_Yq11.223a"; transcript_id "LTR25_Yq11.223a"; locus "LTR25_Yq11.223a"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0192"; model_cov "2208"; model_pct "30.7"; chrY rmsk exon 19830872 19831824 11435 - . gene_id "LTR25_Yq11.223a"; transcript_id "LTR25_Yq11.223a"; locus "LTR25_Yq11.223a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0192"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "6224"; repStart "-3"; chrY rmsk exon 19832813 19834053 11435 - . gene_id "LTR25_Yq11.223a"; transcript_id "LTR25_Yq11.223a"; locus "LTR25_Yq11.223a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0192"; repClass "LTR"; repEnd "6223"; repFamily "ERV1"; repLeft "4976"; repStart "-965"; ### LTR25_Yq11.223b ### chrY rmsk gene 19840244 19844550 . - . gene_id "LTR25_Yq11.223b"; transcript_id "LTR25_Yq11.223b"; locus "LTR25_Yq11.223b"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0193"; model_cov "4325"; model_pct "60.2"; chrY rmsk exon 19840244 19842909 11674 - . gene_id "LTR25_Yq11.223b"; transcript_id "LTR25_Yq11.223b"; locus "LTR25_Yq11.223b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0193"; repClass "LTR"; repEnd "4990"; repFamily "ERV1"; repLeft "2146"; repStart "-2198"; chrY rmsk exon 19842926 19843410 1505 - . gene_id "LTR25_Yq11.223b"; transcript_id "LTR25_Yq11.223b"; locus "LTR25_Yq11.223b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0193"; repClass "LTR"; repEnd "1765"; repFamily "ERV1"; repLeft "1153"; repStart "-5423"; chrY rmsk exon 19843711 19844550 3690 - . gene_id "LTR25_Yq11.223b"; transcript_id "LTR25_Yq11.223b"; locus "LTR25_Yq11.223b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0193"; repClass "LTR"; repEnd "1104"; repFamily "ERV1"; repLeft "235"; repStart "-6084"; ### HML5_Yq11.223a ### chrY rmsk gene 19868522 19873642 . + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0153"; model_cov "3618"; model_pct "52.9"; chrY rmsk exon 19868522 19869008 2591 + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0153"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 19869011 19869702 4015 + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0153"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "3"; chrY rmsk exon 19870321 19870419 525 + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0153"; repClass "LTR"; repEnd "3821"; repFamily "ERVK"; repLeft "-3016"; repStart "3723"; chrY rmsk exon 19870421 19873158 18235 + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0153"; repClass "LTR"; repEnd "6836"; repFamily "ERVK"; repLeft "-1"; repStart "4008"; chrY rmsk exon 19873159 19873642 2720 + . gene_id "HML5_Yq11.223a"; transcript_id "HML5_Yq11.223a"; locus "HML5_Yq11.223a"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0153"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HERV30_Yq11.223 ### chrY rmsk gene 19913676 19919529 . - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; category "prototype"; intModel "HERV30-int"; locid "HERV30-int_0030"; model_cov "4151"; model_pct "50.3"; chrY rmsk exon 19913676 19914389 4536 - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0030"; repClass "LTR"; repEnd "712"; repFamily "ERV1"; repLeft "1"; repStart "-10"; chrY rmsk exon 19914390 19914843 3356 - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0030"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "7796"; repStart "0"; chrY rmsk exon 19914846 19915200 2760 - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0030"; repClass "LTR"; repEnd "3613"; repFamily "ERV1"; repLeft "3258"; repStart "-4644"; chrY rmsk exon 19915486 19918805 25754 - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0030"; repClass "LTR"; repEnd "3352"; repFamily "ERV1"; repLeft "17"; repStart "-4905"; chrY rmsk exon 19918822 19919529 4567 - . gene_id "HERV30_Yq11.223"; transcript_id "HERV30_Yq11.223"; locus "HERV30_Yq11.223"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0030"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_Yq11.223 ### chrY rmsk gene 19924284 19924979 . + . gene_id "HERVL40_Yq11.223"; transcript_id "HERVL40_Yq11.223"; locus "HERVL40_Yq11.223"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0493"; model_cov "717"; model_pct "13.0"; chrY rmsk exon 19924284 19924979 663 + . gene_id "HERVL40_Yq11.223"; transcript_id "HERVL40_Yq11.223"; locus "HERVL40_Yq11.223"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0493"; repClass "LTR"; repEnd "3950"; repFamily "ERVL"; repLeft "-1580"; repStart "3233"; ### LTR25_Yq11.223c ### chrY rmsk gene 19926397 19928225 . + . gene_id "LTR25_Yq11.223c"; transcript_id "LTR25_Yq11.223c"; locus "LTR25_Yq11.223c"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0194"; model_cov "1197"; model_pct "16.7"; chrY rmsk exon 19926397 19926676 2998 + . gene_id "LTR25_Yq11.223c"; transcript_id "LTR25_Yq11.223c"; locus "LTR25_Yq11.223c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0194"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "-3123"; repStart "3802"; chrY rmsk exon 19926959 19926975 2998 + . gene_id "LTR25_Yq11.223c"; transcript_id "LTR25_Yq11.223c"; locus "LTR25_Yq11.223c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0194"; repClass "LTR"; repEnd "4066"; repFamily "ERV1"; repLeft "-3122"; repStart "4066"; chrY rmsk exon 19927264 19928225 2998 + . gene_id "LTR25_Yq11.223c"; transcript_id "LTR25_Yq11.223c"; locus "LTR25_Yq11.223c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0194"; repClass "LTR"; repEnd "5000"; repFamily "ERV1"; repLeft "-2188"; repStart "4066"; ### HML5_Yq11.223b ### chrY rmsk gene 19959451 19964024 . + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0154"; model_cov "3150"; model_pct "46.1"; chrY rmsk exon 19959451 19959903 2679 + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0154"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 19959904 19960096 5306 + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0154"; repClass "LTR"; repEnd "201"; repFamily "ERVK"; repLeft "-6636"; repStart "1"; chrY rmsk exon 19960408 19961103 5306 + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0154"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "-5932"; repStart "202"; chrY rmsk exon 19961096 19961939 14735 + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0154"; repClass "LTR"; repEnd "3189"; repFamily "ERVK"; repLeft "-3648"; repStart "2325"; chrY rmsk exon 19962662 19964024 14735 + . gene_id "HML5_Yq11.223b"; transcript_id "HML5_Yq11.223b"; locus "HML5_Yq11.223b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0154"; repClass "LTR"; repEnd "4573"; repFamily "ERVK"; repLeft "-2264"; repStart "3190"; ### HERV9_Yq11.223a ### chrY rmsk gene 20006302 20011807 . - . gene_id "HERV9_Yq11.223a"; transcript_id "HERV9_Yq11.223a"; locus "HERV9_Yq11.223a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0225"; model_cov "4143"; model_pct "49.1"; chrY rmsk exon 20006302 20006922 3388 - . gene_id "HERV9_Yq11.223a"; transcript_id "HERV9_Yq11.223a"; locus "HERV9_Yq11.223a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0225"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 20006926 20007728 6269 - . gene_id "HERV9_Yq11.223a"; transcript_id "HERV9_Yq11.223a"; locus "HERV9_Yq11.223a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0225"; repClass "LTR"; repEnd "8434"; repFamily "ERV1"; repLeft "7630"; repStart "-2"; chrY rmsk exon 20007726 20011049 24189 - . gene_id "HERV9_Yq11.223a"; transcript_id "HERV9_Yq11.223a"; locus "HERV9_Yq11.223a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0225"; repClass "LTR"; repEnd "3340"; repFamily "ERV1"; repLeft "1"; repStart "-5096"; chrY rmsk exon 20011050 20011807 4369 - . gene_id "HERV9_Yq11.223a"; transcript_id "HERV9_Yq11.223a"; locus "HERV9_Yq11.223a"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0225"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_Yq11.223d ### chrY rmsk gene 20398315 20413068 . - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0195"; model_cov "9648"; model_pct "100.0"; chrY rmsk exon 20398315 20398819 3032 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "49"; repStart "-292"; chrY rmsk exon 20398841 20400395 9160 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "5640"; repStart "0"; chrY rmsk exon 20400717 20400906 9160 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "5639"; repFamily "ERV1"; repLeft "5466"; repStart "-1549"; chrY rmsk exon 20400908 20401097 899 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "5353"; repFamily "ERV1"; repLeft "5163"; repStart "-1835"; chrY rmsk exon 20402435 20402527 8705 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "4734"; repFamily "ERV1"; repLeft "4641"; repStart "-2454"; chrY rmsk exon 20403221 20407910 8705 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "4640"; repFamily "ERV1"; repLeft "248"; repStart "-2548"; chrY rmsk exon 20408052 20408924 4253 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "2"; repStart "0"; chrY rmsk exon 20408927 20412216 6892 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "1522"; repFamily "ERV1"; repLeft "-1730"; repStart "-5666"; chrY rmsk exon 20412217 20413068 3827 - . gene_id "LTR25_Yq11.223d"; transcript_id "LTR25_Yq11.223d"; locus "LTR25_Yq11.223d"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0195"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_Yq11.223e ### chrY rmsk gene 20427114 20427775 . - . gene_id "LTR25_Yq11.223e"; transcript_id "LTR25_Yq11.223e"; locus "LTR25_Yq11.223e"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0196"; model_cov "1144"; model_pct "15.9"; chrY rmsk exon 20427114 20427166 323 - . gene_id "LTR25_Yq11.223e"; transcript_id "LTR25_Yq11.223e"; locus "LTR25_Yq11.223e"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0196"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "792"; repStart "0"; chrY rmsk exon 20427167 20427775 3108 - . gene_id "LTR25_Yq11.223e"; transcript_id "LTR25_Yq11.223e"; locus "LTR25_Yq11.223e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0196"; repClass "LTR"; repEnd "5869"; repFamily "ERV1"; repLeft "4725"; repStart "-1319"; ### HUERSP2_Yq11.223 ### chrY rmsk gene 20447642 20451745 . + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0132"; model_cov "2804"; model_pct "90.8"; chrY rmsk exon 20447642 20447883 997 + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0132"; repClass "LTR"; repEnd "545"; repFamily "ERV1"; repLeft "-2543"; repStart "293"; chrY rmsk exon 20447959 20449198 12219 + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0132"; repClass "LTR"; repEnd "1764"; repFamily "ERV1"; repLeft "-1324"; repStart "534"; chrY rmsk exon 20449712 20450043 12219 + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0132"; repClass "LTR"; repEnd "2033"; repFamily "ERV1"; repLeft "-1055"; repStart "1765"; chrY rmsk exon 20450286 20451291 12219 + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0132"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2034"; chrY rmsk exon 20451292 20451745 1948 + . gene_id "HUERSP2_Yq11.223"; transcript_id "HUERSP2_Yq11.223"; locus "HUERSP2_Yq11.223"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0132"; repClass "LTR"; repEnd "408"; repFamily "ERV1"; repLeft "-391"; repStart "1"; ### HUERSP3_Yq11.223a ### chrY rmsk gene 20465957 20469876 . - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0248"; model_cov "3104"; model_pct "34.8"; chrY rmsk exon 20465957 20466771 4432 - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0248"; repClass "LTR"; repEnd "3443"; repFamily "ERV1"; repLeft "2637"; repStart "-5476"; chrY rmsk exon 20466762 20467574 3457 - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0248"; repClass "LTR"; repEnd "2250"; repFamily "ERV1"; repLeft "1343"; repStart "-6669"; chrY rmsk exon 20468258 20468647 3457 - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0248"; repClass "LTR"; repEnd "1342"; repFamily "ERV1"; repLeft "918"; repStart "-7577"; chrY rmsk exon 20468653 20469561 1693 - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0248"; repClass "LTR"; repEnd "2739"; repFamily "ERV1"; repLeft "1833"; repStart "-6180"; chrY rmsk exon 20469818 20469876 1693 - . gene_id "HUERSP3_Yq11.223a"; transcript_id "HUERSP3_Yq11.223a"; locus "HUERSP3_Yq11.223a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0248"; repClass "LTR"; repEnd "1832"; repFamily "ERV1"; repLeft "1771"; repStart "-7087"; ### HUERSP3_Yq11.223b ### chrY rmsk gene 20539035 20546169 . + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0249"; model_cov "6774"; model_pct "76.0"; chrY rmsk exon 20539035 20539306 1497 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "2021"; repFamily "ERV1"; repLeft "-6898"; repStart "1735"; chrY rmsk exon 20539338 20541426 13259 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "4172"; repFamily "ERV1"; repLeft "-4747"; repStart "2100"; chrY rmsk exon 20541740 20544755 13259 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "5380"; repFamily "ERV1"; repLeft "-3539"; repStart "2331"; chrY rmsk exon 20544843 20545034 922 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "7478"; repFamily "ERV1"; repLeft "-1441"; repStart "7285"; chrY rmsk exon 20545035 20545731 2474 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "6463"; repFamily "ERV1"; repLeft "-2456"; repStart "5758"; chrY rmsk exon 20545739 20546169 1404 + . gene_id "HUERSP3_Yq11.223b"; transcript_id "HUERSP3_Yq11.223b"; locus "HUERSP3_Yq11.223b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0249"; repClass "LTR"; repEnd "7193"; repFamily "ERV1"; repLeft "-1726"; repStart "6724"; ### HUERSP3_Yq11.223c ### chrY rmsk gene 20547949 20550872 . - . gene_id "HUERSP3_Yq11.223c"; transcript_id "HUERSP3_Yq11.223c"; locus "HUERSP3_Yq11.223c"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0250"; model_cov "2985"; model_pct "33.5"; chrY rmsk exon 20547949 20550872 8076 - . gene_id "HUERSP3_Yq11.223c"; transcript_id "HUERSP3_Yq11.223c"; locus "HUERSP3_Yq11.223c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0250"; repClass "LTR"; repEnd "8916"; repFamily "ERV1"; repLeft "5931"; repStart "-3"; ### HUERSP3_Yq11.223d ### chrY rmsk gene 20553455 20558899 . - . gene_id "HUERSP3_Yq11.223d"; transcript_id "HUERSP3_Yq11.223d"; locus "HUERSP3_Yq11.223d"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0251"; model_cov "5164"; model_pct "57.9"; chrY rmsk exon 20553455 20558492 14683 - . gene_id "HUERSP3_Yq11.223d"; transcript_id "HUERSP3_Yq11.223d"; locus "HUERSP3_Yq11.223d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0251"; repClass "LTR"; repEnd "5937"; repFamily "ERV1"; repLeft "868"; repStart "-2982"; chrY rmsk exon 20558804 20558899 10262 - . gene_id "HUERSP3_Yq11.223d"; transcript_id "HUERSP3_Yq11.223d"; locus "HUERSP3_Yq11.223d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0251"; repClass "LTR"; repEnd "867"; repFamily "ERV1"; repLeft "772"; repStart "-8052"; ### LTR25_Yq11.223f ### chrY rmsk gene 20612558 20614724 . + . gene_id "LTR25_Yq11.223f"; transcript_id "LTR25_Yq11.223f"; locus "LTR25_Yq11.223f"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0197"; model_cov "1877"; model_pct "26.1"; chrY rmsk exon 20612558 20612983 7914 + . gene_id "LTR25_Yq11.223f"; transcript_id "LTR25_Yq11.223f"; locus "LTR25_Yq11.223f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0197"; repClass "LTR"; repEnd "4970"; repFamily "ERV1"; repLeft "-2218"; repStart "4524"; chrY rmsk exon 20613297 20614724 7914 + . gene_id "LTR25_Yq11.223f"; transcript_id "LTR25_Yq11.223f"; locus "LTR25_Yq11.223f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0197"; repClass "LTR"; repEnd "6402"; repFamily "ERV1"; repLeft "-786"; repStart "4971"; ### HERVE_Yq11.223 ### chrY rmsk gene 20643149 20651932 . + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0173"; model_cov "7681"; model_pct "98.3"; chrY rmsk exon 20643149 20643534 1278 + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0173"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "43"; chrY rmsk exon 20643535 20643924 2104 + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0173"; repClass "LTR"; repEnd "1302"; repFamily "ERV1"; repLeft "-6511"; repStart "918"; chrY rmsk exon 20644172 20650743 38942 + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0173"; repClass "LTR"; repEnd "7060"; repFamily "ERV1"; repLeft "-753"; repStart "512"; chrY rmsk exon 20650772 20651513 38942 + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0173"; repClass "LTR"; repEnd "7810"; repFamily "ERV1"; repLeft "-3"; repStart "7061"; chrY rmsk exon 20651518 20651932 1385 + . gene_id "HERVE_Yq11.223"; transcript_id "HERVE_Yq11.223"; locus "HERVE_Yq11.223"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0173"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### HML5_Yq11.223c ### chrY rmsk gene 20657735 20663850 . + . gene_id "HML5_Yq11.223c"; transcript_id "HML5_Yq11.223c"; locus "HML5_Yq11.223c"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0155"; model_cov "5518"; model_pct "80.7"; chrY rmsk exon 20657735 20658188 2970 + . gene_id "HML5_Yq11.223c"; transcript_id "HML5_Yq11.223c"; locus "HML5_Yq11.223c"; repName "LTR22A"; geneRegion "ltr"; locid "HERVK22-int_0155"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "0"; repStart "5"; chrY rmsk exon 20658189 20658252 341 + . gene_id "HML5_Yq11.223c"; transcript_id "HML5_Yq11.223c"; locus "HML5_Yq11.223c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0155"; repClass "LTR"; repEnd "65"; repFamily "ERVK"; repLeft "-6772"; repStart "1"; chrY rmsk exon 20658500 20663850 24086 + . gene_id "HML5_Yq11.223c"; transcript_id "HML5_Yq11.223c"; locus "HML5_Yq11.223c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0155"; repClass "LTR"; repEnd "5545"; repFamily "ERVK"; repLeft "-1292"; repStart "91"; ### LTR46_Yq11.223 ### chrY rmsk gene 20664214 20669988 . + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; category "prototype"; intModel "LTR46-int"; locid "LTR46-int_0030"; model_cov "3939"; model_pct "56.4"; chrY rmsk exon 20664214 20664674 2851 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 20664675 20665179 2947 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "-6443"; repStart "1"; chrY rmsk exon 20665807 20666044 1115 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "885"; repFamily "ERV1"; repLeft "-6100"; repStart "658"; chrY rmsk exon 20666040 20667478 15648 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "2468"; repFamily "ERV1"; repLeft "-4517"; repStart "991"; chrY rmsk exon 20667777 20668419 15648 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "3127"; repFamily "ERV1"; repLeft "-3858"; repStart "2469"; chrY rmsk exon 20668473 20669231 15648 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "3907"; repFamily "ERV1"; repLeft "-3078"; repStart "3128"; chrY rmsk exon 20669221 20669464 1162 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46-int"; geneRegion "internal"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "6985"; repFamily "ERV1"; repLeft "0"; repStart "6728"; chrY rmsk exon 20669465 20669517 342 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "53"; repFamily "ERV1"; repLeft "-407"; repStart "1"; chrY rmsk exon 20669524 20669988 3004 + . gene_id "LTR46_Yq11.223"; transcript_id "LTR46_Yq11.223"; locus "LTR46_Yq11.223"; repName "LTR46"; geneRegion "ltr"; locid "LTR46-int_0030"; repClass "LTR"; repEnd "460"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERV3_Yq11.223a ### chrY rmsk gene 20790551 20792521 . - . gene_id "HERV3_Yq11.223a"; transcript_id "HERV3_Yq11.223a"; locus "HERV3_Yq11.223a"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0092"; model_cov "1972"; model_pct "23.4"; chrY rmsk exon 20790551 20792521 8168 - . gene_id "HERV3_Yq11.223a"; transcript_id "HERV3_Yq11.223a"; locus "HERV3_Yq11.223a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0092"; repClass "LTR"; repEnd "6301"; repFamily "ERV1"; repLeft "4329"; repStart "-2125"; ### HML5_Yq11.223d ### chrY rmsk gene 20801401 20806662 . + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0156"; model_cov "4121"; model_pct "60.3"; chrY rmsk exon 20801401 20801899 2635 + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0156"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 20801900 20802181 1720 + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0156"; repClass "LTR"; repEnd "288"; repFamily "ERVK"; repLeft "-6549"; repStart "1"; chrY rmsk exon 20802186 20805916 18016 + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0156"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3003"; chrY rmsk exon 20805917 20806082 2304 + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0156"; repClass "LTR"; repEnd "153"; repFamily "ERVK"; repLeft "-349"; repStart "1"; chrY rmsk exon 20806331 20806662 2304 + . gene_id "HML5_Yq11.223d"; transcript_id "HML5_Yq11.223d"; locus "HML5_Yq11.223d"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0156"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "0"; repStart "154"; ### MER4B_Yq11.223a ### chrY rmsk gene 20877405 20884036 . - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0572"; model_cov "4022"; model_pct "59.5"; chrY rmsk exon 20877405 20877993 3798 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "599"; repFamily "ERV1"; repLeft "1"; repStart "-182"; chrY rmsk exon 20878871 20879033 7063 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "6645"; repFamily "ERV1"; repLeft "6494"; repStart "-113"; chrY rmsk exon 20879343 20881083 7063 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "6493"; repFamily "ERV1"; repLeft "4610"; repStart "-265"; chrY rmsk exon 20881428 20881591 2822 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "4609"; repFamily "ERV1"; repLeft "4448"; repStart "-2149"; chrY rmsk exon 20881587 20882132 2897 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3527"; repStart "-2670"; chrY rmsk exon 20882458 20882538 2897 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "3526"; repFamily "ERV1"; repLeft "3453"; repStart "-3232"; chrY rmsk exon 20882595 20883301 4178 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "3001"; repFamily "ERV1"; repLeft "2231"; repStart "-3757"; chrY rmsk exon 20883614 20884036 4178 - . gene_id "MER4B_Yq11.223a"; transcript_id "MER4B_Yq11.223a"; locus "MER4B_Yq11.223a"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0572"; repClass "LTR"; repEnd "2230"; repFamily "ERV1"; repLeft "1807"; repStart "-4528"; ### HUERSP3B_Yq11.223 ### chrY rmsk gene 20890840 20896441 . + . gene_id "HUERSP3B_Yq11.223"; transcript_id "HUERSP3B_Yq11.223"; locus "HUERSP3B_Yq11.223"; category "oneside"; intModel "HUERS-P3b-int"; locid "HUERS-P3b-int_0159"; model_cov "5584"; model_pct "75.3"; chrY rmsk exon 20890840 20891047 784 + . gene_id "HUERSP3B_Yq11.223"; transcript_id "HUERSP3B_Yq11.223"; locus "HUERSP3B_Yq11.223"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0159"; repClass "LTR"; repEnd "-404"; repFamily "ERV1"; repLeft "-7822"; repStart "-623"; chrY rmsk exon 20891368 20891494 595 + . gene_id "HUERSP3B_Yq11.223"; transcript_id "HUERSP3B_Yq11.223"; locus "HUERSP3B_Yq11.223"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0159"; repClass "LTR"; repEnd "2642"; repFamily "ERV1"; repLeft "-4776"; repStart "2506"; chrY rmsk exon 20891925 20895467 10822 + . gene_id "HUERSP3B_Yq11.223"; transcript_id "HUERSP3B_Yq11.223"; locus "HUERSP3B_Yq11.223"; repName "HUERS-P3b-int"; geneRegion "internal"; locid "HUERS-P3b-int_0159"; repClass "LTR"; repEnd "6780"; repFamily "ERV1"; repLeft "-638"; repStart "1551"; chrY rmsk exon 20895881 20896441 3036 + . gene_id "HUERSP3B_Yq11.223"; transcript_id "HUERSP3B_Yq11.223"; locus "HUERSP3B_Yq11.223"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3b-int_0159"; repClass "LTR"; repEnd "569"; repFamily "ERV1"; repLeft "-75"; repStart "1"; ### HERVH_Yq11.223a ### chrY rmsk gene 20896484 20900798 . + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1319"; model_cov "3819"; model_pct "49.5"; chrY rmsk exon 20896484 20896916 2270 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 20896917 20897341 1498 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-7254"; repStart "1"; chrY rmsk exon 20897400 20900064 7118 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "3082"; repFamily "ERV1"; repLeft "-4631"; repStart "665"; chrY rmsk exon 20900061 20900122 416 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "3995"; repFamily "ERV1"; repLeft "-3718"; repStart "3933"; chrY rmsk exon 20900102 20900440 1476 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "4542"; repFamily "ERV1"; repLeft "-3171"; repStart "3996"; chrY rmsk exon 20900465 20900798 1984 + . gene_id "HERVH_Yq11.223a"; transcript_id "HERVH_Yq11.223a"; locus "HERVH_Yq11.223a"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1319"; repClass "LTR"; repEnd "5858"; repFamily "ERV1"; repLeft "-1855"; repStart "5522"; ### HERVH_Yq11.223b ### chrY rmsk gene 20902921 20905009 . - . gene_id "HERVH_Yq11.223b"; transcript_id "HERVH_Yq11.223b"; locus "HERVH_Yq11.223b"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1320"; model_cov "1360"; model_pct "17.6"; chrY rmsk exon 20902921 20903272 1901 - . gene_id "HERVH_Yq11.223b"; transcript_id "HERVH_Yq11.223b"; locus "HERVH_Yq11.223b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1320"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 20903273 20903692 2130 - . gene_id "HERVH_Yq11.223b"; transcript_id "HERVH_Yq11.223b"; locus "HERVH_Yq11.223b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1320"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7283"; repStart "0"; chrY rmsk exon 20903701 20904630 5694 - . gene_id "HERVH_Yq11.223b"; transcript_id "HERVH_Yq11.223b"; locus "HERVH_Yq11.223b"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1320"; repClass "LTR"; repEnd "5014"; repFamily "ERV1"; repLeft "4084"; repStart "-2699"; chrY rmsk exon 20904644 20905009 1802 - . gene_id "HERVH_Yq11.223b"; transcript_id "HERVH_Yq11.223b"; locus "HERVH_Yq11.223b"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1320"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_Yq11.223b ### chrY rmsk gene 20907626 20909538 . - . gene_id "MER4B_Yq11.223b"; transcript_id "MER4B_Yq11.223b"; locus "MER4B_Yq11.223b"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0573"; model_cov "1194"; model_pct "17.7"; chrY rmsk exon 20907626 20908751 4596 - . gene_id "MER4B_Yq11.223b"; transcript_id "MER4B_Yq11.223b"; locus "MER4B_Yq11.223b"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0573"; repClass "LTR"; repEnd "1195"; repFamily "ERV1"; repLeft "1"; repStart "-5563"; chrY rmsk exon 20908754 20908886 4066 - . gene_id "MER4B_Yq11.223b"; transcript_id "MER4B_Yq11.223b"; locus "MER4B_Yq11.223b"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0573"; repClass "LTR"; repEnd "779"; repFamily "ERV1"; repLeft "649"; repStart "-2"; chrY rmsk exon 20908916 20909538 4066 - . gene_id "MER4B_Yq11.223b"; transcript_id "MER4B_Yq11.223b"; locus "MER4B_Yq11.223b"; repName "MER4E1"; geneRegion "ltr"; locid "MER4B-int_0573"; repClass "LTR"; repEnd "648"; repFamily "ERV1"; repLeft "2"; repStart "-133"; ### PRIMA41_Yq11.223a ### chrY rmsk gene 20909871 20914288 . + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0184"; model_cov "3895"; model_pct "50.2"; chrY rmsk exon 20909871 20910047 912 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "0"; repStart "343"; chrY rmsk exon 20910209 20910408 3237 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "214"; repFamily "ERV1"; repLeft "-7542"; repStart "3"; chrY rmsk exon 20910721 20911215 3237 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "-6990"; repStart "215"; chrY rmsk exon 20911284 20911503 3237 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "1013"; repFamily "ERV1"; repLeft "-6743"; repStart "767"; chrY rmsk exon 20911505 20913270 9446 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "2956"; repFamily "ERV1"; repLeft "-4800"; repStart "1118"; chrY rmsk exon 20913257 20913456 1018 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "4443"; repFamily "ERV1"; repLeft "-3313"; repStart "4244"; chrY rmsk exon 20913448 20913609 1039 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "5313"; repFamily "ERV1"; repLeft "-2443"; repStart "5151"; chrY rmsk exon 20913609 20913795 827 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "5645"; repFamily "ERV1"; repLeft "-2111"; repStart "5461"; chrY rmsk exon 20913785 20914288 2697 + . gene_id "PRIMA41_Yq11.223a"; transcript_id "PRIMA41_Yq11.223a"; locus "PRIMA41_Yq11.223a"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0184"; repClass "LTR"; repEnd "6588"; repFamily "ERV1"; repLeft "-1168"; repStart "6084"; ### PRIMA41_Yq11.223b ### chrY rmsk gene 20917352 20919360 . + . gene_id "PRIMA41_Yq11.223b"; transcript_id "PRIMA41_Yq11.223b"; locus "PRIMA41_Yq11.223b"; category "oneside"; intModel "PRIMA41-int"; locid "PRIMA41-int_0185"; model_cov "1166"; model_pct "15.0"; chrY rmsk exon 20917352 20917942 6973 + . gene_id "PRIMA41_Yq11.223b"; transcript_id "PRIMA41_Yq11.223b"; locus "PRIMA41_Yq11.223b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0185"; repClass "LTR"; repEnd "7147"; repFamily "ERV1"; repLeft "-609"; repStart "6583"; chrY rmsk exon 20918235 20918840 6973 + . gene_id "PRIMA41_Yq11.223b"; transcript_id "PRIMA41_Yq11.223b"; locus "PRIMA41_Yq11.223b"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0185"; repClass "LTR"; repEnd "7750"; repFamily "ERV1"; repLeft "-6"; repStart "7148"; chrY rmsk exon 20918848 20919360 3022 + . gene_id "PRIMA41_Yq11.223b"; transcript_id "PRIMA41_Yq11.223b"; locus "PRIMA41_Yq11.223b"; repName "MER41C"; geneRegion "ltr"; locid "PRIMA41-int_0185"; repClass "LTR"; repEnd "518"; repFamily "ERV1"; repLeft "-3"; repStart "3"; ### HUERSP3_Yq11.223e ### chrY rmsk gene 20950172 20952245 . - . gene_id "HUERSP3_Yq11.223e"; transcript_id "HUERSP3_Yq11.223e"; locus "HUERSP3_Yq11.223e"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0254"; model_cov "2100"; model_pct "23.5"; chrY rmsk exon 20950172 20952128 10078 - . gene_id "HUERSP3_Yq11.223e"; transcript_id "HUERSP3_Yq11.223e"; locus "HUERSP3_Yq11.223e"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0254"; repClass "LTR"; repEnd "3639"; repFamily "ERV1"; repLeft "1617"; repStart "-5280"; chrY rmsk exon 20952173 20952245 10078 - . gene_id "HUERSP3_Yq11.223e"; transcript_id "HUERSP3_Yq11.223e"; locus "HUERSP3_Yq11.223e"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0254"; repClass "LTR"; repEnd "1616"; repFamily "ERV1"; repLeft "1538"; repStart "-7303"; ### HUERSP3_Yq11.223f ### chrY rmsk gene 20953005 20954409 . - . gene_id "HUERSP3_Yq11.223f"; transcript_id "HUERSP3_Yq11.223f"; locus "HUERSP3_Yq11.223f"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0256"; model_cov "912"; model_pct "10.2"; chrY rmsk exon 20953005 20953673 1613 - . gene_id "HUERSP3_Yq11.223f"; transcript_id "HUERSP3_Yq11.223f"; locus "HUERSP3_Yq11.223f"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0256"; repClass "LTR"; repEnd "2862"; repFamily "ERV1"; repLeft "1950"; repStart "-6057"; chrY rmsk exon 20953737 20953898 910 - . gene_id "HUERSP3_Yq11.223f"; transcript_id "HUERSP3_Yq11.223f"; locus "HUERSP3_Yq11.223f"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0256"; repClass "LTR"; repEnd "701"; repFamily "ERV1"; repLeft "535"; repStart "-27"; chrY rmsk exon 20954207 20954409 910 - . gene_id "HUERSP3_Yq11.223f"; transcript_id "HUERSP3_Yq11.223f"; locus "HUERSP3_Yq11.223f"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0256"; repClass "LTR"; repEnd "534"; repFamily "ERV1"; repLeft "251"; repStart "-194"; ### HML5_Yq11.223e ### chrY rmsk gene 20967116 20974836 . + . gene_id "HML5_Yq11.223e"; transcript_id "HML5_Yq11.223e"; locus "HML5_Yq11.223e"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0157"; model_cov "6834"; model_pct "100.0"; chrY rmsk exon 20967116 20967575 1847 + . gene_id "HML5_Yq11.223e"; transcript_id "HML5_Yq11.223e"; locus "HML5_Yq11.223e"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0157"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "35"; chrY rmsk exon 20967578 20974378 39115 + . gene_id "HML5_Yq11.223e"; transcript_id "HML5_Yq11.223e"; locus "HML5_Yq11.223e"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0157"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "3"; chrY rmsk exon 20974379 20974836 1963 + . gene_id "HML5_Yq11.223e"; transcript_id "HML5_Yq11.223e"; locus "HML5_Yq11.223e"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0157"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HUERSP3_Yq11.223g ### chrY rmsk gene 20975920 20979872 . - . gene_id "HUERSP3_Yq11.223g"; transcript_id "HUERSP3_Yq11.223g"; locus "HUERSP3_Yq11.223g"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0257"; model_cov "2696"; model_pct "30.2"; chrY rmsk exon 20975920 20976082 1963 - . gene_id "HUERSP3_Yq11.223g"; transcript_id "HUERSP3_Yq11.223g"; locus "HUERSP3_Yq11.223g"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0257"; repClass "LTR"; repEnd "8303"; repFamily "ERV1"; repLeft "8145"; repStart "-616"; chrY rmsk exon 20977041 20977622 1963 - . gene_id "HUERSP3_Yq11.223g"; transcript_id "HUERSP3_Yq11.223g"; locus "HUERSP3_Yq11.223g"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0257"; repClass "LTR"; repEnd "8144"; repFamily "ERV1"; repLeft "7564"; repStart "-775"; chrY rmsk exon 20977638 20979098 6458 - . gene_id "HUERSP3_Yq11.223g"; transcript_id "HUERSP3_Yq11.223g"; locus "HUERSP3_Yq11.223g"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0257"; repClass "LTR"; repEnd "7077"; repFamily "ERV1"; repLeft "5595"; repStart "-1842"; chrY rmsk exon 20979393 20979872 6458 - . gene_id "HUERSP3_Yq11.223g"; transcript_id "HUERSP3_Yq11.223g"; locus "HUERSP3_Yq11.223g"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0257"; repClass "LTR"; repEnd "5594"; repFamily "ERV1"; repLeft "5118"; repStart "-3325"; ### HUERSP3_Yq11.223h ### chrY rmsk gene 20986067 20987124 . - . gene_id "HUERSP3_Yq11.223h"; transcript_id "HUERSP3_Yq11.223h"; locus "HUERSP3_Yq11.223h"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0258"; model_cov "1068"; model_pct "12.0"; chrY rmsk exon 20986067 20987124 4097 - . gene_id "HUERSP3_Yq11.223h"; transcript_id "HUERSP3_Yq11.223h"; locus "HUERSP3_Yq11.223h"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0258"; repClass "LTR"; repEnd "6943"; repFamily "ERV1"; repLeft "5875"; repStart "-1976"; ### HML6_Yq11.223a ### chrY rmsk gene 21019985 21022249 . - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; category "internal"; intModel "HERVK3-int"; locid "HERVK3-int_0112"; model_cov "1686"; model_pct "23.4"; chrY rmsk exon 21019985 21020044 426 - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0112"; repClass "LTR"; repEnd "4695"; repFamily "ERVK"; repLeft "4639"; repStart "-2507"; chrY rmsk exon 21020048 21020377 2410 - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0112"; repClass "LTR"; repEnd "4253"; repFamily "ERVK"; repLeft "3924"; repStart "-2949"; chrY rmsk exon 21020367 21020515 741 - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0112"; repClass "LTR"; repEnd "3643"; repFamily "ERVK"; repLeft "3495"; repStart "-3559"; chrY rmsk exon 21020515 21021087 3903 - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0112"; repClass "LTR"; repEnd "2620"; repFamily "ERVK"; repLeft "2046"; repStart "-4582"; chrY rmsk exon 21021693 21022249 2946 - . gene_id "HML6_Yq11.223a"; transcript_id "HML6_Yq11.223a"; locus "HML6_Yq11.223a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0112"; repClass "LTR"; repEnd "2049"; repFamily "ERVK"; repLeft "1470"; repStart "-5153"; ### HERVH_Yq11.223c ### chrY rmsk gene 21035920 21045245 . - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1322"; model_cov "7456"; model_pct "96.7"; chrY rmsk exon 21035920 21036418 3056 - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1322"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 21036419 21037651 10195 - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1322"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6482"; repStart "0"; chrY rmsk exon 21038058 21038221 10195 - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1322"; repClass "LTR"; repEnd "6481"; repFamily "ERV1"; repLeft "6320"; repStart "-1232"; chrY rmsk exon 21038215 21044744 15283 - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1322"; repClass "LTR"; repEnd "6065"; repFamily "ERV1"; repLeft "1"; repStart "-1648"; chrY rmsk exon 21044747 21045245 2959 - . gene_id "HERVH_Yq11.223c"; transcript_id "HERVH_Yq11.223c"; locus "HERVH_Yq11.223c"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1322"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HML6_Yq11.223b ### chrY rmsk gene 21061840 21062942 . - . gene_id "HML6_Yq11.223b"; transcript_id "HML6_Yq11.223b"; locus "HML6_Yq11.223b"; category "internal"; intModel "HERVK3-int"; locid "HERVK3-int_0114"; model_cov "1107"; model_pct "15.4"; chrY rmsk exon 21061840 21061899 427 - . gene_id "HML6_Yq11.223b"; transcript_id "HML6_Yq11.223b"; locus "HML6_Yq11.223b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0114"; repClass "LTR"; repEnd "4695"; repFamily "ERVK"; repLeft "4639"; repStart "-2507"; chrY rmsk exon 21061903 21062232 2414 - . gene_id "HML6_Yq11.223b"; transcript_id "HML6_Yq11.223b"; locus "HML6_Yq11.223b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0114"; repClass "LTR"; repEnd "4253"; repFamily "ERVK"; repLeft "3924"; repStart "-2949"; chrY rmsk exon 21062222 21062370 739 - . gene_id "HML6_Yq11.223b"; transcript_id "HML6_Yq11.223b"; locus "HML6_Yq11.223b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0114"; repClass "LTR"; repEnd "3643"; repFamily "ERVK"; repLeft "3495"; repStart "-3559"; chrY rmsk exon 21062370 21062942 3919 - . gene_id "HML6_Yq11.223b"; transcript_id "HML6_Yq11.223b"; locus "HML6_Yq11.223b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0114"; repClass "LTR"; repEnd "2620"; repFamily "ERVK"; repLeft "2046"; repStart "-4582"; ### HML5_Yq11.223f ### chrY rmsk gene 21087112 21092532 . - . gene_id "HML5_Yq11.223f"; transcript_id "HML5_Yq11.223f"; locus "HML5_Yq11.223f"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0158"; model_cov "4988"; model_pct "73.0"; chrY rmsk exon 21087112 21087589 2436 - . gene_id "HML5_Yq11.223f"; transcript_id "HML5_Yq11.223f"; locus "HML5_Yq11.223f"; repName "LTR22C0"; geneRegion "ltr"; locid "HERVK22-int_0158"; repClass "LTR"; repEnd "502"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 21087590 21092083 31601 - . gene_id "HML5_Yq11.223f"; transcript_id "HML5_Yq11.223f"; locus "HML5_Yq11.223f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0158"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "2327"; repStart "0"; chrY rmsk exon 21092079 21092532 2661 - . gene_id "HML5_Yq11.223f"; transcript_id "HML5_Yq11.223f"; locus "HML5_Yq11.223f"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0158"; repClass "LTR"; repEnd "905"; repFamily "ERVK"; repLeft "427"; repStart "-5932"; ### HERV4_Yq11.223a ### chrY rmsk gene 21103652 21105014 . + . gene_id "HERV4_Yq11.223a"; transcript_id "HERV4_Yq11.223a"; locus "HERV4_Yq11.223a"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0155"; model_cov "1356"; model_pct "20.7"; chrY rmsk exon 21103652 21104524 3193 + . gene_id "HERV4_Yq11.223a"; transcript_id "HERV4_Yq11.223a"; locus "HERV4_Yq11.223a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0155"; repClass "LTR"; repEnd "4533"; repFamily "ERV1"; repLeft "-2006"; repStart "3654"; chrY rmsk exon 21104536 21105014 1777 + . gene_id "HERV4_Yq11.223a"; transcript_id "HERV4_Yq11.223a"; locus "HERV4_Yq11.223a"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0155"; repClass "LTR"; repEnd "5097"; repFamily "ERV1"; repLeft "-1442"; repStart "4620"; ### HERV4_Yq11.223b ### chrY rmsk gene 21105479 21106733 . + . gene_id "HERV4_Yq11.223b"; transcript_id "HERV4_Yq11.223b"; locus "HERV4_Yq11.223b"; category "internal"; intModel "HERV4_I-int"; locid "HERV4_I-int_0156"; model_cov "971"; model_pct "14.8"; chrY rmsk exon 21105479 21105807 687 + . gene_id "HERV4_Yq11.223b"; transcript_id "HERV4_Yq11.223b"; locus "HERV4_Yq11.223b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0156"; repClass "LTR"; repEnd "1682"; repFamily "ERV1"; repLeft "-4857"; repStart "1352"; chrY rmsk exon 21106114 21106733 2542 + . gene_id "HERV4_Yq11.223b"; transcript_id "HERV4_Yq11.223b"; locus "HERV4_Yq11.223b"; repName "HERV4_I-int"; geneRegion "internal"; locid "HERV4_I-int_0156"; repClass "LTR"; repEnd "2843"; repFamily "ERV1"; repLeft "-3696"; repStart "2202"; ### MER4B_Yq11.223c ### chrY rmsk gene 21137116 21138290 . - . gene_id "MER4B_Yq11.223c"; transcript_id "MER4B_Yq11.223c"; locus "MER4B_Yq11.223c"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0574"; model_cov "932"; model_pct "13.8"; chrY rmsk exon 21137116 21137590 3035 - . gene_id "MER4B_Yq11.223c"; transcript_id "MER4B_Yq11.223c"; locus "MER4B_Yq11.223c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0574"; repClass "LTR"; repEnd "5141"; repFamily "ERV1"; repLeft "4652"; repStart "-1617"; chrY rmsk exon 21137845 21138057 3035 - . gene_id "MER4B_Yq11.223c"; transcript_id "MER4B_Yq11.223c"; locus "MER4B_Yq11.223c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0574"; repClass "LTR"; repEnd "4651"; repFamily "ERV1"; repLeft "4452"; repStart "-2107"; chrY rmsk exon 21138057 21138290 1215 - . gene_id "MER4B_Yq11.223c"; transcript_id "MER4B_Yq11.223c"; locus "MER4B_Yq11.223c"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0574"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3844"; repStart "-2670"; ### LTR25_Yq11.223g ### chrY rmsk gene 21138826 21141259 . + . gene_id "LTR25_Yq11.223g"; transcript_id "LTR25_Yq11.223g"; locus "LTR25_Yq11.223g"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0199"; model_cov "2660"; model_pct "37.0"; chrY rmsk exon 21138826 21138927 466 + . gene_id "LTR25_Yq11.223g"; transcript_id "LTR25_Yq11.223g"; locus "LTR25_Yq11.223g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0199"; repClass "LTR"; repEnd "97"; repFamily "ERV1"; repLeft "-7091"; repStart "1"; chrY rmsk exon 21138926 21141259 3786 + . gene_id "LTR25_Yq11.223g"; transcript_id "LTR25_Yq11.223g"; locus "LTR25_Yq11.223g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0199"; repClass "LTR"; repEnd "2826"; repFamily "ERV1"; repLeft "-4362"; repStart "262"; ### LTR19_Yq11.223a ### chrY rmsk gene 21141258 21146830 . + . gene_id "LTR19_Yq11.223a"; transcript_id "LTR19_Yq11.223a"; locus "LTR19_Yq11.223a"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0088"; model_cov "5025"; model_pct "90.0"; chrY rmsk exon 21141258 21141846 3159 + . gene_id "LTR19_Yq11.223a"; transcript_id "LTR19_Yq11.223a"; locus "LTR19_Yq11.223a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0088"; repClass "LTR"; repEnd "1284"; repFamily "ERV1"; repLeft "-4302"; repStart "645"; chrY rmsk exon 21141844 21142538 22104 + . gene_id "LTR19_Yq11.223a"; transcript_id "LTR19_Yq11.223a"; locus "LTR19_Yq11.223a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0088"; repClass "LTR"; repEnd "1278"; repFamily "ERV1"; repLeft "-4308"; repStart "424"; chrY rmsk exon 21142844 21146334 22104 + . gene_id "LTR19_Yq11.223a"; transcript_id "LTR19_Yq11.223a"; locus "LTR19_Yq11.223a"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0088"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "0"; repStart "2054"; chrY rmsk exon 21146335 21146830 2125 + . gene_id "LTR19_Yq11.223a"; transcript_id "LTR19_Yq11.223a"; locus "LTR19_Yq11.223a"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0088"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### LTR25_Yq11.223h ### chrY rmsk gene 21146832 21149903 . + . gene_id "LTR25_Yq11.223h"; transcript_id "LTR25_Yq11.223h"; locus "LTR25_Yq11.223h"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0200"; model_cov "2270"; model_pct "31.6"; chrY rmsk exon 21146832 21147307 10264 + . gene_id "LTR25_Yq11.223h"; transcript_id "LTR25_Yq11.223h"; locus "LTR25_Yq11.223h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0200"; repClass "LTR"; repEnd "5407"; repFamily "ERV1"; repLeft "-1781"; repStart "4927"; chrY rmsk exon 21147738 21149246 10264 + . gene_id "LTR25_Yq11.223h"; transcript_id "LTR25_Yq11.223h"; locus "LTR25_Yq11.223h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0200"; repClass "LTR"; repEnd "6984"; repFamily "ERV1"; repLeft "-204"; repStart "5408"; chrY rmsk exon 21149690 21149903 1186 + . gene_id "LTR25_Yq11.223h"; transcript_id "LTR25_Yq11.223h"; locus "LTR25_Yq11.223h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0200"; repClass "LTR"; repEnd "7187"; repFamily "ERV1"; repLeft "-1"; repStart "6973"; ### HML5_Yq11.223g ### chrY rmsk gene 21180645 21186509 . + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0160"; model_cov "3341"; model_pct "48.9"; chrY rmsk exon 21180645 21180948 1606 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "688"; repFamily "ERVK"; repLeft "-6149"; repStart "381"; chrY rmsk exon 21181502 21181601 6206 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "2724"; repFamily "ERVK"; repLeft "-4113"; repStart "2619"; chrY rmsk exon 21181904 21183246 6206 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "3806"; repFamily "ERVK"; repLeft "-3031"; repStart "2027"; chrY rmsk exon 21184313 21184458 2640 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "4169"; repFamily "ERVK"; repLeft "-2668"; repStart "4029"; chrY rmsk exon 21184460 21184621 1021 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "4927"; repFamily "ERVK"; repLeft "-1910"; repStart "4767"; chrY rmsk exon 21184775 21185705 3193 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "-1734"; repStart "4253"; chrY rmsk exon 21185706 21186023 2094 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "331"; repFamily "ERVK"; repLeft "-269"; repStart "1"; chrY rmsk exon 21186231 21186509 1727 + . gene_id "HML5_Yq11.223g"; transcript_id "HML5_Yq11.223g"; locus "HML5_Yq11.223g"; repName "LTR22B2"; geneRegion "ltr"; locid "HERVK22-int_0160"; repClass "LTR"; repEnd "600"; repFamily "ERVK"; repLeft "0"; repStart "320"; ### MER61_Yq11.223a ### chrY rmsk gene 21211940 21213898 . + . gene_id "MER61_Yq11.223a"; transcript_id "MER61_Yq11.223a"; locus "MER61_Yq11.223a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0442"; model_cov "1889"; model_pct "36.2"; chrY rmsk exon 21211940 21213804 10585 + . gene_id "MER61_Yq11.223a"; transcript_id "MER61_Yq11.223a"; locus "MER61_Yq11.223a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0442"; repClass "LTR"; repEnd "5208"; repFamily "ERV1"; repLeft "-9"; repStart "3319"; chrY rmsk exon 21213816 21213898 451 + . gene_id "MER61_Yq11.223a"; transcript_id "MER61_Yq11.223a"; locus "MER61_Yq11.223a"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0442"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-255"; repStart "3"; ### HERV3_Yq11.223b ### chrY rmsk gene 21240702 21249208 . - . gene_id "HERV3_Yq11.223b"; transcript_id "HERV3_Yq11.223b"; locus "HERV3_Yq11.223b"; category "internal"; intModel "HERV3-int"; locid "HERV3-int_0093"; model_cov "8425"; model_pct "100.0"; chrY rmsk exon 21240702 21249208 31923 - . gene_id "HERV3_Yq11.223b"; transcript_id "HERV3_Yq11.223b"; locus "HERV3_Yq11.223b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0093"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_Yq11.223a ### chrY rmsk gene 21297606 21300945 . + . gene_id "HERVL_Yq11.223a"; transcript_id "HERVL_Yq11.223a"; locus "HERVL_Yq11.223a"; category "unknown"; intModel "HERVL-int"; locid "HERVL-int_1439"; model_cov "2731"; model_pct "48.3"; chrY rmsk exon 21297606 21298048 2910 + . gene_id "HERVL_Yq11.223a"; transcript_id "HERVL_Yq11.223a"; locus "HERVL_Yq11.223a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1439"; repClass "LTR"; repEnd "438"; repFamily "ERVL"; repLeft "-6"; repStart "1"; chrY rmsk exon 21298051 21298213 858 + . gene_id "HERVL_Yq11.223a"; transcript_id "HERVL_Yq11.223a"; locus "HERVL_Yq11.223a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1439"; repClass "LTR"; repEnd "168"; repFamily "ERVL"; repLeft "-5486"; repStart "1"; chrY rmsk exon 21298218 21298358 846 + . gene_id "HERVL_Yq11.223a"; transcript_id "HERVL_Yq11.223a"; locus "HERVL_Yq11.223a"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1439"; repClass "LTR"; repEnd "46"; repFamily "ERVL"; repLeft "-407"; repStart "-102"; chrY rmsk exon 21298359 21300945 9740 + . gene_id "HERVL_Yq11.223a"; transcript_id "HERVL_Yq11.223a"; locus "HERVL_Yq11.223a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1439"; repClass "LTR"; repEnd "2758"; repFamily "ERVL"; repLeft "-2896"; repStart "194"; ### LTR19_Yq11.223b ### chrY rmsk gene 21348366 21350395 . - . gene_id "LTR19_Yq11.223b"; transcript_id "LTR19_Yq11.223b"; locus "LTR19_Yq11.223b"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0089"; model_cov "712"; model_pct "12.7"; chrY rmsk exon 21348366 21348928 3488 - . gene_id "LTR19_Yq11.223b"; transcript_id "LTR19_Yq11.223b"; locus "LTR19_Yq11.223b"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0089"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 21349150 21350395 4348 - . gene_id "LTR19_Yq11.223b"; transcript_id "LTR19_Yq11.223b"; locus "LTR19_Yq11.223b"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0089"; repClass "LTR"; repEnd "4500"; repFamily "ERV1"; repLeft "3788"; repStart "-1086"; ### HERVK14C_Yq11.223a ### chrY rmsk gene 21446234 21452370 . - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0036"; model_cov "4670"; model_pct "62.8"; chrY rmsk exon 21446234 21446840 4102 - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0036"; repClass "LTR"; repEnd "585"; repFamily "ERVK"; repLeft "3"; repStart "-2"; chrY rmsk exon 21446844 21447336 15653 - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0036"; repClass "LTR"; repEnd "7433"; repFamily "ERVK"; repLeft "6938"; repStart "-1"; chrY rmsk exon 21447638 21449273 15653 - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0036"; repClass "LTR"; repEnd "6937"; repFamily "ERVK"; repLeft "5306"; repStart "-497"; chrY rmsk exon 21449267 21451769 18202 - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0036"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "1"; repStart "-4889"; chrY rmsk exon 21451770 21452370 3906 - . gene_id "HERVK14C_Yq11.223a"; transcript_id "HERVK14C_Yq11.223a"; locus "HERVK14C_Yq11.223a"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0036"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVEA_Yq11.223a ### chrY rmsk gene 21571262 21579310 . + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0124"; model_cov "7141"; model_pct "91.0"; chrY rmsk exon 21571262 21571706 1886 + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0124"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 21571707 21572606 3017 + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0124"; repClass "LTR"; repEnd "981"; repFamily "ERV1"; repLeft "-6866"; repStart "1"; chrY rmsk exon 21572612 21573428 4290 + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0124"; repClass "LTR"; repEnd "2407"; repFamily "ERV1"; repLeft "-5440"; repStart "1593"; chrY rmsk exon 21573436 21578861 28504 + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0124"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "0"; repStart "2500"; chrY rmsk exon 21578862 21579310 1965 + . gene_id "HERVEA_Yq11.223a"; transcript_id "HERVEA_Yq11.223a"; locus "HERVEA_Yq11.223a"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0124"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVK14C_Yq11.223b ### chrY rmsk gene 21580603 21586044 . + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0037"; model_cov "4543"; model_pct "61.1"; chrY rmsk exon 21580603 21580938 4139 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "255"; chrY rmsk exon 21580939 21582698 13605 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "-5653"; repStart "1"; chrY rmsk exon 21582699 21583330 4999 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "2544"; repFamily "ERVK"; repLeft "-4890"; repStart "1907"; chrY rmsk exon 21583325 21585319 16382 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "7310"; repFamily "ERVK"; repLeft "-124"; repStart "5306"; chrY rmsk exon 21585349 21585458 16382 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "7433"; repFamily "ERVK"; repLeft "-1"; repStart "7311"; chrY rmsk exon 21585459 21586044 4250 + . gene_id "HERVK14C_Yq11.223b"; transcript_id "HERVK14C_Yq11.223b"; locus "HERVK14C_Yq11.223b"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0037"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML3_Yq11.223b ### chrY rmsk gene 21624095 21628006 . - . gene_id "HML3_Yq11.223b"; transcript_id "HML3_Yq11.223b"; locus "HML3_Yq11.223b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0264"; model_cov "3438"; model_pct "57.1"; chrY rmsk exon 21624095 21624605 3843 - . gene_id "HML3_Yq11.223b"; transcript_id "HML3_Yq11.223b"; locus "HML3_Yq11.223b"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0264"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 21624608 21626535 14479 - . gene_id "HML3_Yq11.223b"; transcript_id "HML3_Yq11.223b"; locus "HML3_Yq11.223b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0264"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "4080"; repStart "-3"; chrY rmsk exon 21626504 21626935 3267 - . gene_id "HML3_Yq11.223b"; transcript_id "HML3_Yq11.223b"; locus "HML3_Yq11.223b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0264"; repClass "LTR"; repEnd "4155"; repFamily "ERVK"; repLeft "3723"; repStart "-1866"; chrY rmsk exon 21626936 21628006 7986 - . gene_id "HML3_Yq11.223b"; transcript_id "HML3_Yq11.223b"; locus "HML3_Yq11.223b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0264"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1730"; repStart "-3223"; ### HERVL_Yq11.223b ### chrY rmsk gene 21645119 21650036 . - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1440"; model_cov "4037"; model_pct "71.4"; chrY rmsk exon 21645119 21645445 1911 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "387"; repFamily "ERVL"; repLeft "59"; repStart "-57"; chrY rmsk exon 21645717 21645774 1911 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "58"; repFamily "ERVL"; repLeft "1"; repStart "-386"; chrY rmsk exon 21645777 21646041 4392 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "5652"; repFamily "ERVL"; repLeft "5381"; repStart "-2"; chrY rmsk exon 21646339 21646835 4392 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "5380"; repFamily "ERVL"; repLeft "4901"; repStart "-274"; chrY rmsk exon 21646848 21649455 16638 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "4574"; repFamily "ERVL"; repLeft "1897"; repStart "-1080"; chrY rmsk exon 21649428 21650036 3657 - . gene_id "HERVL_Yq11.223b"; transcript_id "HERVL_Yq11.223b"; locus "HERVL_Yq11.223b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1440"; repClass "LTR"; repEnd "1486"; repFamily "ERVL"; repLeft "876"; repStart "-4168"; ### HML5_Yq11.223h ### chrY rmsk gene 21650037 21658697 . + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0161"; model_cov "6300"; model_pct "92.1"; chrY rmsk exon 21650037 21650522 2332 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 21650531 21651017 2602 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "-6345"; repStart "8"; chrY rmsk exon 21651025 21655886 23206 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "5841"; repFamily "ERVK"; repLeft "-996"; repStart "911"; chrY rmsk exon 21656192 21656244 7734 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "5885"; repFamily "ERVK"; repLeft "-952"; repStart "5842"; chrY rmsk exon 21656273 21656313 5098 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "6028"; repFamily "ERVK"; repLeft "-809"; repStart "5993"; chrY rmsk exon 21657380 21658196 5098 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "6029"; chrY rmsk exon 21658212 21658697 2283 + . gene_id "HML5_Yq11.223h"; transcript_id "HML5_Yq11.223h"; locus "HML5_Yq11.223h"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0161"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "28"; ### HERVL_Yq11.223c ### chrY rmsk gene 21683255 21689552 . + . gene_id "HERVL_Yq11.223c"; transcript_id "HERVL_Yq11.223c"; locus "HERVL_Yq11.223c"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1442"; model_cov "5508"; model_pct "97.4"; chrY rmsk exon 21683255 21683668 2100 + . gene_id "HERVL_Yq11.223c"; transcript_id "HERVL_Yq11.223c"; locus "HERVL_Yq11.223c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1442"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrY rmsk exon 21683669 21685508 11179 + . gene_id "HERVL_Yq11.223c"; transcript_id "HERVL_Yq11.223c"; locus "HERVL_Yq11.223c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1442"; repClass "LTR"; repEnd "1840"; repFamily "ERVL"; repLeft "-3814"; repStart "1"; chrY rmsk exon 21685500 21689181 23545 + . gene_id "HERVL_Yq11.223c"; transcript_id "HERVL_Yq11.223c"; locus "HERVL_Yq11.223c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1442"; repClass "LTR"; repEnd "5653"; repFamily "ERVL"; repLeft "-1"; repStart "1984"; chrY rmsk exon 21689183 21689552 1811 + . gene_id "HERVL_Yq11.223c"; transcript_id "HERVL_Yq11.223c"; locus "HERVL_Yq11.223c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1442"; repClass "LTR"; repEnd "385"; repFamily "ERVL"; repLeft "-59"; repStart "1"; ### LTR25_Yq11.223i ### chrY rmsk gene 21703055 21706399 . + . gene_id "LTR25_Yq11.223i"; transcript_id "LTR25_Yq11.223i"; locus "LTR25_Yq11.223i"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0201"; model_cov "2674"; model_pct "37.2"; chrY rmsk exon 21703055 21703427 871 + . gene_id "LTR25_Yq11.223i"; transcript_id "LTR25_Yq11.223i"; locus "LTR25_Yq11.223i"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0201"; repClass "LTR"; repEnd "843"; repFamily "ERV1"; repLeft "-1"; repStart "451"; chrY rmsk exon 21703433 21704560 9791 + . gene_id "LTR25_Yq11.223i"; transcript_id "LTR25_Yq11.223i"; locus "LTR25_Yq11.223i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0201"; repClass "LTR"; repEnd "1151"; repFamily "ERV1"; repLeft "-6037"; repStart "3"; chrY rmsk exon 21704843 21706399 9791 + . gene_id "LTR25_Yq11.223i"; transcript_id "LTR25_Yq11.223i"; locus "LTR25_Yq11.223i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0201"; repClass "LTR"; repEnd "2678"; repFamily "ERV1"; repLeft "-4510"; repStart "1152"; ### LTR25_Yq11.223j ### chrY rmsk gene 21706403 21707808 . - . gene_id "LTR25_Yq11.223j"; transcript_id "LTR25_Yq11.223j"; locus "LTR25_Yq11.223j"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0202"; model_cov "1461"; model_pct "20.3"; chrY rmsk exon 21706403 21707808 4192 - . gene_id "LTR25_Yq11.223j"; transcript_id "LTR25_Yq11.223j"; locus "LTR25_Yq11.223j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0202"; repClass "LTR"; repEnd "1369"; repFamily "ERV1"; repLeft "-92"; repStart "-5819"; ### LTR25_Yq11.223k ### chrY rmsk gene 21707841 21710815 . - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0203"; model_cov "1554"; model_pct "21.6"; chrY rmsk exon 21707841 21707855 4192 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "1802"; repFamily "ERV1"; repLeft "1788"; repStart "-5386"; chrY rmsk exon 21708116 21708427 4192 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "1787"; repFamily "ERV1"; repLeft "1462"; repStart "-5401"; chrY rmsk exon 21708451 21708910 4426 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "1381"; repFamily "ERV1"; repLeft "908"; repStart "-5807"; chrY rmsk exon 21709222 21709862 4426 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "907"; repFamily "ERV1"; repLeft "257"; repStart "-6281"; chrY rmsk exon 21709863 21709949 331 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "1"; repStart "-7095"; chrY rmsk exon 21709950 21710815 3456 - . gene_id "LTR25_Yq11.223k"; transcript_id "LTR25_Yq11.223k"; locus "LTR25_Yq11.223k"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0203"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### LTR25_Yq11.223l ### chrY rmsk gene 21710818 21713008 . + . gene_id "LTR25_Yq11.223l"; transcript_id "LTR25_Yq11.223l"; locus "LTR25_Yq11.223l"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0204"; model_cov "2200"; model_pct "30.6"; chrY rmsk exon 21710818 21711543 2483 + . gene_id "LTR25_Yq11.223l"; transcript_id "LTR25_Yq11.223l"; locus "LTR25_Yq11.223l"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0204"; repClass "LTR"; repEnd "1677"; repFamily "ERV1"; repLeft "-5511"; repStart "960"; chrY rmsk exon 21711544 21713008 5486 + . gene_id "LTR25_Yq11.223l"; transcript_id "LTR25_Yq11.223l"; locus "LTR25_Yq11.223l"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0204"; repClass "LTR"; repEnd "4885"; repFamily "ERV1"; repLeft "-2303"; repStart "3402"; ### HML3_Yq11.223c ### chrY rmsk gene 21713009 21719078 . + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0265"; model_cov "5091"; model_pct "84.6"; chrY rmsk exon 21713009 21713519 3753 + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0265"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 21713520 21713923 19153 + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0265"; repClass "LTR"; repEnd "417"; repFamily "ERVK"; repLeft "-5604"; repStart "1"; chrY rmsk exon 21714005 21716307 19153 + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0265"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "418"; chrY rmsk exon 21716308 21718567 14872 + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0265"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "-3"; repStart "3723"; chrY rmsk exon 21718570 21719078 3552 + . gene_id "HML3_Yq11.223c"; transcript_id "HML3_Yq11.223c"; locus "HML3_Yq11.223c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0265"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR25_Yq11.223m ### chrY rmsk gene 21719079 21721568 . + . gene_id "LTR25_Yq11.223m"; transcript_id "LTR25_Yq11.223m"; locus "LTR25_Yq11.223m"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0205"; model_cov "1915"; model_pct "26.6"; chrY rmsk exon 21719079 21719864 2648 + . gene_id "LTR25_Yq11.223m"; transcript_id "LTR25_Yq11.223m"; locus "LTR25_Yq11.223m"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0205"; repClass "LTR"; repEnd "5716"; repFamily "ERV1"; repLeft "-1472"; repStart "4880"; chrY rmsk exon 21720162 21720289 2648 + . gene_id "LTR25_Yq11.223m"; transcript_id "LTR25_Yq11.223m"; locus "LTR25_Yq11.223m"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0205"; repClass "LTR"; repEnd "5833"; repFamily "ERV1"; repLeft "-1355"; repStart "5717"; chrY rmsk exon 21720315 21720656 3705 + . gene_id "LTR25_Yq11.223m"; transcript_id "LTR25_Yq11.223m"; locus "LTR25_Yq11.223m"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0205"; repClass "LTR"; repEnd "6553"; repFamily "ERV1"; repLeft "-635"; repStart "6221"; chrY rmsk exon 21720926 21721568 3705 + . gene_id "LTR25_Yq11.223m"; transcript_id "LTR25_Yq11.223m"; locus "LTR25_Yq11.223m"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0205"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "-3"; repStart "6554"; ### LTR25_Yq11.223n ### chrY rmsk gene 21722825 21730109 . - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0206"; model_cov "4655"; model_pct "64.8"; chrY rmsk exon 21722825 21723629 2806 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "762"; repFamily "ERV1"; repLeft "1"; repStart "-82"; chrY rmsk exon 21723630 21724664 7626 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "6146"; repStart "0"; chrY rmsk exon 21724980 21725995 7626 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "6145"; repFamily "ERV1"; repLeft "5085"; repStart "-1043"; chrY rmsk exon 21726222 21726931 4217 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "5073"; repFamily "ERV1"; repLeft "4371"; repStart "-2115"; chrY rmsk exon 21727191 21727423 4217 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "4146"; repStart "-2818"; chrY rmsk exon 21727700 21727804 4217 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "4145"; repFamily "ERV1"; repLeft "4042"; repStart "-3043"; chrY rmsk exon 21727808 21728504 1743 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "1"; repStart "-203"; chrY rmsk exon 21728505 21730109 3403 - . gene_id "LTR25_Yq11.223n"; transcript_id "LTR25_Yq11.223n"; locus "LTR25_Yq11.223n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0206"; repClass "LTR"; repEnd "1459"; repFamily "ERV1"; repLeft "-65"; repStart "-5729"; ### HUERSP3_Yq11.223i ### chrY rmsk gene 21733319 21735285 . + . gene_id "HUERSP3_Yq11.223i"; transcript_id "HUERSP3_Yq11.223i"; locus "HUERSP3_Yq11.223i"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0260"; model_cov "1704"; model_pct "19.1"; chrY rmsk exon 21733319 21734939 4401 + . gene_id "HUERSP3_Yq11.223i"; transcript_id "HUERSP3_Yq11.223i"; locus "HUERSP3_Yq11.223i"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0260"; repClass "LTR"; repEnd "8874"; repFamily "ERV1"; repLeft "-45"; repStart "7214"; chrY rmsk exon 21735233 21735285 4401 + . gene_id "HUERSP3_Yq11.223i"; transcript_id "HUERSP3_Yq11.223i"; locus "HUERSP3_Yq11.223i"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0260"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8875"; ### LTR25_Yq11.223o ### chrY rmsk gene 21736103 21737145 . - . gene_id "LTR25_Yq11.223o"; transcript_id "LTR25_Yq11.223o"; locus "LTR25_Yq11.223o"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0207"; model_cov "1036"; model_pct "14.4"; chrY rmsk exon 21736103 21737145 3202 - . gene_id "LTR25_Yq11.223o"; transcript_id "LTR25_Yq11.223o"; locus "LTR25_Yq11.223o"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0207"; repClass "LTR"; repEnd "1861"; repFamily "ERV1"; repLeft "825"; repStart "-5327"; ### HML5_Yq11.223i ### chrY rmsk gene 21744177 21747862 . + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0162"; model_cov "2027"; model_pct "29.6"; chrY rmsk exon 21744177 21744678 2330 + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0162"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 21744713 21745224 2903 + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0162"; repClass "LTR"; repEnd "504"; repFamily "ERVK"; repLeft "-6333"; repStart "3"; chrY rmsk exon 21745721 21747030 4885 + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0162"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "-1758"; repStart "3904"; chrY rmsk exon 21747007 21747401 1357 + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0162"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "-1734"; repStart "4752"; chrY rmsk exon 21747402 21747862 2066 + . gene_id "HML5_Yq11.223i"; transcript_id "HML5_Yq11.223i"; locus "HML5_Yq11.223i"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0162"; repClass "LTR"; repEnd "458"; repFamily "ERVK"; repLeft "-34"; repStart "1"; ### HML5_Yq11.223j ### chrY rmsk gene 21757748 21761463 . - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0163"; model_cov "2276"; model_pct "33.3"; chrY rmsk exon 21757748 21758238 2119 - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0163"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "1"; repStart "-4"; chrY rmsk exon 21758239 21758633 1357 - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0163"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "4752"; repStart "-1734"; chrY rmsk exon 21758610 21759919 4885 - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0163"; repClass "LTR"; repEnd "5079"; repFamily "ERVK"; repLeft "3655"; repStart "-1758"; chrY rmsk exon 21760416 21760927 2903 - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0163"; repClass "LTR"; repEnd "504"; repFamily "ERVK"; repLeft "3"; repStart "-6333"; chrY rmsk exon 21760962 21761463 2330 - . gene_id "HML5_Yq11.223j"; transcript_id "HML5_Yq11.223j"; locus "HML5_Yq11.223j"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0163"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### LTR25_Yq11.223p ### chrY rmsk gene 21766679 21767721 . + . gene_id "LTR25_Yq11.223p"; transcript_id "LTR25_Yq11.223p"; locus "LTR25_Yq11.223p"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0208"; model_cov "1036"; model_pct "14.4"; chrY rmsk exon 21766679 21767721 3202 + . gene_id "LTR25_Yq11.223p"; transcript_id "LTR25_Yq11.223p"; locus "LTR25_Yq11.223p"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0208"; repClass "LTR"; repEnd "1861"; repFamily "ERV1"; repLeft "-5327"; repStart "825"; ### HUERSP3_Yq11.223j ### chrY rmsk gene 21768539 21770505 . - . gene_id "HUERSP3_Yq11.223j"; transcript_id "HUERSP3_Yq11.223j"; locus "HUERSP3_Yq11.223j"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0261"; model_cov "1704"; model_pct "19.1"; chrY rmsk exon 21768539 21768591 4401 - . gene_id "HUERSP3_Yq11.223j"; transcript_id "HUERSP3_Yq11.223j"; locus "HUERSP3_Yq11.223j"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0261"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8875"; repStart "0"; chrY rmsk exon 21768885 21770505 4401 - . gene_id "HUERSP3_Yq11.223j"; transcript_id "HUERSP3_Yq11.223j"; locus "HUERSP3_Yq11.223j"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0261"; repClass "LTR"; repEnd "8874"; repFamily "ERV1"; repLeft "7214"; repStart "-45"; ### HUERSP3_Yq11.223k ### chrY rmsk gene 21773934 21775319 . + . gene_id "HUERSP3_Yq11.223k"; transcript_id "HUERSP3_Yq11.223k"; locus "HUERSP3_Yq11.223k"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0263"; model_cov "1256"; model_pct "14.1"; chrY rmsk exon 21773934 21775319 3161 + . gene_id "HUERSP3_Yq11.223k"; transcript_id "HUERSP3_Yq11.223k"; locus "HUERSP3_Yq11.223k"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0263"; repClass "LTR"; repEnd "3190"; repFamily "ERV1"; repLeft "-5729"; repStart "1934"; ### LTR25_Yq11.223q ### chrY rmsk gene 21775320 21780995 . + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; category "prototype"; intModel "LTR25-int"; locid "LTR25-int_0209"; model_cov "3131"; model_pct "43.6"; chrY rmsk exon 21775320 21776016 1743 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "-203"; repStart "1"; chrY rmsk exon 21776020 21776124 4217 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "4145"; repFamily "ERV1"; repLeft "-3043"; repStart "4041"; chrY rmsk exon 21776401 21776633 4217 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "4370"; repFamily "ERV1"; repLeft "-2818"; repStart "4146"; chrY rmsk exon 21776893 21777602 4217 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "5072"; repFamily "ERV1"; repLeft "-2116"; repStart "4371"; chrY rmsk exon 21777818 21778841 7797 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "6145"; repFamily "ERV1"; repLeft "-1043"; repStart "5085"; chrY rmsk exon 21779157 21780191 7797 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "6146"; chrY rmsk exon 21780192 21780995 2801 + . gene_id "LTR25_Yq11.223q"; transcript_id "LTR25_Yq11.223q"; locus "LTR25_Yq11.223q"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0209"; repClass "LTR"; repEnd "762"; repFamily "ERV1"; repLeft "-82"; repStart "1"; ### LTR25_Yq11.223r ### chrY rmsk gene 21781224 21782188 . - . gene_id "LTR25_Yq11.223r"; transcript_id "LTR25_Yq11.223r"; locus "LTR25_Yq11.223r"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0210"; model_cov "856"; model_pct "11.9"; chrY rmsk exon 21781224 21782188 3247 - . gene_id "LTR25_Yq11.223r"; transcript_id "LTR25_Yq11.223r"; locus "LTR25_Yq11.223r"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0210"; repClass "LTR"; repEnd "2749"; repFamily "ERV1"; repLeft "1893"; repStart "-4439"; ### LTR25_Yq11.223s ### chrY rmsk gene 21782252 21784740 . - . gene_id "LTR25_Yq11.223s"; transcript_id "LTR25_Yq11.223s"; locus "LTR25_Yq11.223s"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0211"; model_cov "1915"; model_pct "26.6"; chrY rmsk exon 21782252 21782904 3706 - . gene_id "LTR25_Yq11.223s"; transcript_id "LTR25_Yq11.223s"; locus "LTR25_Yq11.223s"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0211"; repClass "LTR"; repEnd "7185"; repFamily "ERV1"; repLeft "6554"; repStart "-3"; chrY rmsk exon 21783164 21783505 3706 - . gene_id "LTR25_Yq11.223s"; transcript_id "LTR25_Yq11.223s"; locus "LTR25_Yq11.223s"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0211"; repClass "LTR"; repEnd "6553"; repFamily "ERV1"; repLeft "6221"; repStart "-635"; chrY rmsk exon 21783531 21783658 2646 - . gene_id "LTR25_Yq11.223s"; transcript_id "LTR25_Yq11.223s"; locus "LTR25_Yq11.223s"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0211"; repClass "LTR"; repEnd "5833"; repFamily "ERV1"; repLeft "5717"; repStart "-1355"; chrY rmsk exon 21783955 21784740 2646 - . gene_id "LTR25_Yq11.223s"; transcript_id "LTR25_Yq11.223s"; locus "LTR25_Yq11.223s"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0211"; repClass "LTR"; repEnd "5716"; repFamily "ERV1"; repLeft "4880"; repStart "-1472"; ### HML3_Yq11.223d ### chrY rmsk gene 21784741 21789281 . - . gene_id "HML3_Yq11.223d"; transcript_id "HML3_Yq11.223d"; locus "HML3_Yq11.223d"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0266"; model_cov "4064"; model_pct "67.5"; chrY rmsk exon 21784741 21785249 3602 - . gene_id "HML3_Yq11.223d"; transcript_id "HML3_Yq11.223d"; locus "HML3_Yq11.223d"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0266"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 21785252 21787511 15150 - . gene_id "HML3_Yq11.223d"; transcript_id "HML3_Yq11.223d"; locus "HML3_Yq11.223d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0266"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "3723"; repStart "-3"; chrY rmsk exon 21787512 21789281 13943 - . gene_id "HML3_Yq11.223d"; transcript_id "HML3_Yq11.223d"; locus "HML3_Yq11.223d"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0266"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1029"; repStart "-3223"; ### HERVK14C_Yq11.223c ### chrY rmsk gene 21845472 21850950 . - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; category "prototype"; intModel "HERVK14C-int"; locid "HERVK14C-int_0038"; model_cov "4544"; model_pct "61.1"; chrY rmsk exon 21845472 21846062 4171 - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0038"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 21846063 21848177 16251 - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0038"; repClass "LTR"; repEnd "7434"; repFamily "ERVK"; repLeft "5306"; repStart "0"; chrY rmsk exon 21848173 21848805 5150 - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0038"; repClass "LTR"; repEnd "2543"; repFamily "ERVK"; repLeft "1907"; repStart "-4891"; chrY rmsk exon 21848806 21850614 13198 - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; repName "HERVK14C-int"; geneRegion "internal"; locid "HERVK14C-int_0038"; repClass "LTR"; repEnd "1781"; repFamily "ERVK"; repLeft "1"; repStart "-5653"; chrY rmsk exon 21850615 21850950 4173 - . gene_id "HERVK14C_Yq11.223c"; transcript_id "HERVK14C_Yq11.223c"; locus "HERVK14C_Yq11.223c"; repName "LTR14C"; geneRegion "ltr"; locid "HERVK14C-int_0038"; repClass "LTR"; repEnd "587"; repFamily "ERVK"; repLeft "257"; repStart "0"; ### HARLEQUIN_Yq11.223 ### chrY rmsk gene 21852226 21855019 . - . gene_id "HARLEQUIN_Yq11.223"; transcript_id "HARLEQUIN_Yq11.223"; locus "HARLEQUIN_Yq11.223"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0196"; model_cov "2174"; model_pct "31.5"; chrY rmsk exon 21852226 21852681 2078 - . gene_id "HARLEQUIN_Yq11.223"; transcript_id "HARLEQUIN_Yq11.223"; locus "HARLEQUIN_Yq11.223"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0196"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 21852682 21855019 9649 - . gene_id "HARLEQUIN_Yq11.223"; transcript_id "HARLEQUIN_Yq11.223"; locus "HARLEQUIN_Yq11.223"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0196"; repClass "LTR"; repEnd "6895"; repFamily "ERV1"; repLeft "4721"; repStart "-1"; ### HERVEA_Yq11.223b ### chrY rmsk gene 21855018 21858167 . - . gene_id "HERVEA_Yq11.223b"; transcript_id "HERVEA_Yq11.223b"; locus "HERVEA_Yq11.223b"; category "oneside"; intModel "HERVE_a-int"; locid "HERVE_a-int_0125"; model_cov "2765"; model_pct "35.2"; chrY rmsk exon 21855018 21855432 2704 - . gene_id "HERVEA_Yq11.223b"; transcript_id "HERVEA_Yq11.223b"; locus "HERVEA_Yq11.223b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0125"; repClass "LTR"; repEnd "2950"; repFamily "ERV1"; repLeft "2541"; repStart "-4897"; chrY rmsk exon 21855441 21857709 10090 - . gene_id "HERVEA_Yq11.223b"; transcript_id "HERVEA_Yq11.223b"; locus "HERVEA_Yq11.223b"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0125"; repClass "LTR"; repEnd "2365"; repFamily "ERV1"; repLeft "9"; repStart "-5482"; chrY rmsk exon 21857718 21858167 2072 - . gene_id "HERVEA_Yq11.223b"; transcript_id "HERVEA_Yq11.223b"; locus "HERVEA_Yq11.223b"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0125"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML3_Yq11.223e ### chrY rmsk gene 21967628 21969504 . - . gene_id "HML3_Yq11.223e"; transcript_id "HML3_Yq11.223e"; locus "HML3_Yq11.223e"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0267"; model_cov "1354"; model_pct "22.5"; chrY rmsk exon 21967628 21968382 5816 - . gene_id "HML3_Yq11.223e"; transcript_id "HML3_Yq11.223e"; locus "HML3_Yq11.223e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0267"; repClass "LTR"; repEnd "2031"; repFamily "ERVK"; repLeft "1280"; repStart "-3990"; chrY rmsk exon 21968383 21968960 4064 - . gene_id "HML3_Yq11.223e"; transcript_id "HML3_Yq11.223e"; locus "HML3_Yq11.223e"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0267"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chrY rmsk exon 21968961 21969017 3733 - . gene_id "HML3_Yq11.223e"; transcript_id "HML3_Yq11.223e"; locus "HML3_Yq11.223e"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0267"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "457"; repStart "0"; chrY rmsk exon 21969064 21969504 3733 - . gene_id "HML3_Yq11.223e"; transcript_id "HML3_Yq11.223e"; locus "HML3_Yq11.223e"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0267"; repClass "LTR"; repEnd "456"; repFamily "ERVK"; repLeft "2"; repStart "-57"; ### HERV3_Yq11.223c ### chrY rmsk gene 21978506 21984010 . + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0094"; model_cov "4632"; model_pct "55.0"; chrY rmsk exon 21978506 21978881 1422 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "204"; chrY rmsk exon 21978886 21980591 4923 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "1658"; repFamily "ERV1"; repLeft "-6768"; repStart "5"; chrY rmsk exon 21980590 21981661 3289 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "2886"; repFamily "ERV1"; repLeft "-5540"; repStart "1611"; chrY rmsk exon 21981719 21983269 6748 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "-3666"; repStart "3182"; chrY rmsk exon 21983354 21983481 522 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "8409"; repFamily "ERV1"; repLeft "-17"; repStart "8283"; chrY rmsk exon 21983509 21984010 2053 + . gene_id "HERV3_Yq11.223c"; transcript_id "HERV3_Yq11.223c"; locus "HERV3_Yq11.223c"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0094"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "55"; ### HERV3_Yq11.223d ### chrY rmsk gene 22012695 22021525 . + . gene_id "HERV3_Yq11.223d"; transcript_id "HERV3_Yq11.223d"; locus "HERV3_Yq11.223d"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0095"; model_cov "8211"; model_pct "97.4"; chrY rmsk exon 22012695 22012819 699 + . gene_id "HERV3_Yq11.223d"; transcript_id "HERV3_Yq11.223d"; locus "HERV3_Yq11.223d"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0095"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "472"; chrY rmsk exon 22012821 22018191 31867 + . gene_id "HERV3_Yq11.223d"; transcript_id "HERV3_Yq11.223d"; locus "HERV3_Yq11.223d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0095"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-3024"; repStart "1"; chrY rmsk exon 22018194 22020965 16337 + . gene_id "HERV3_Yq11.223d"; transcript_id "HERV3_Yq11.223d"; locus "HERV3_Yq11.223d"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0095"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "5616"; chrY rmsk exon 22020966 22021525 2583 + . gene_id "HERV3_Yq11.223d"; transcript_id "HERV3_Yq11.223d"; locus "HERV3_Yq11.223d"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0095"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_Yq11.223f ### chrY rmsk gene 22031146 22035768 . + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0268"; model_cov "3662"; model_pct "60.8"; chrY rmsk exon 22031146 22031550 2549 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-70"; repStart "1"; chrY rmsk exon 22031586 22031642 2549 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "-1"; repStart "443"; chrY rmsk exon 22031643 22032408 8710 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "804"; repFamily "ERVK"; repLeft "-5217"; repStart "1"; chrY rmsk exon 22032469 22033138 8710 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "-4512"; repStart "805"; chrY rmsk exon 22033130 22034501 9545 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "5165"; repFamily "ERVK"; repLeft "-856"; repStart "3785"; chrY rmsk exon 22034518 22035289 5234 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5246"; chrY rmsk exon 22035290 22035768 2937 + . gene_id "HML3_Yq11.223f"; transcript_id "HML3_Yq11.223f"; locus "HML3_Yq11.223f"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0268"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR19_Yq11.223c ### chrY rmsk gene 22230245 22232239 . - . gene_id "LTR19_Yq11.223c"; transcript_id "LTR19_Yq11.223c"; locus "LTR19_Yq11.223c"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0090"; model_cov "1750"; model_pct "31.3"; chrY rmsk exon 22230245 22231081 4777 - . gene_id "LTR19_Yq11.223c"; transcript_id "LTR19_Yq11.223c"; locus "LTR19_Yq11.223c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0090"; repClass "LTR"; repEnd "1961"; repFamily "ERV1"; repLeft "1129"; repStart "-3625"; chrY rmsk exon 22231069 22231968 2455 - . gene_id "LTR19_Yq11.223c"; transcript_id "LTR19_Yq11.223c"; locus "LTR19_Yq11.223c"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0090"; repClass "LTR"; repEnd "920"; repFamily "ERV1"; repLeft "2"; repStart "-4666"; chrY rmsk exon 22231970 22232239 1514 - . gene_id "LTR19_Yq11.223c"; transcript_id "LTR19_Yq11.223c"; locus "LTR19_Yq11.223c"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0090"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "307"; repStart "0"; ### HML5_Yq11.223k ### chrY rmsk gene 22248309 22255645 . - . gene_id "HML5_Yq11.223k"; transcript_id "HML5_Yq11.223k"; locus "HML5_Yq11.223k"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0164"; model_cov "6791"; model_pct "99.3"; chrY rmsk exon 22248309 22248870 3905 - . gene_id "HML5_Yq11.223k"; transcript_id "HML5_Yq11.223k"; locus "HML5_Yq11.223k"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0164"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 22248872 22255645 40584 - . gene_id "HML5_Yq11.223k"; transcript_id "HML5_Yq11.223k"; locus "HML5_Yq11.223k"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0164"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "46"; repStart "0"; ### HML5_Yq11.223l ### chrY rmsk gene 22372532 22373914 . + . gene_id "HML5_Yq11.223l"; transcript_id "HML5_Yq11.223l"; locus "HML5_Yq11.223l"; category "internal"; intModel "HERVK22-int"; locid "HERVK22-int_0165"; model_cov "1376"; model_pct "20.1"; chrY rmsk exon 22372532 22373914 8123 + . gene_id "HML5_Yq11.223l"; transcript_id "HML5_Yq11.223l"; locus "HML5_Yq11.223l"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0165"; repClass "LTR"; repEnd "1422"; repFamily "ERVK"; repLeft "-5415"; repStart "46"; ### HML3_Yq11.223g ### chrY rmsk gene 22550627 22553926 . - . gene_id "HML3_Yq11.223g"; transcript_id "HML3_Yq11.223g"; locus "HML3_Yq11.223g"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0269"; model_cov "2857"; model_pct "47.5"; chrY rmsk exon 22550627 22551105 2937 - . gene_id "HML3_Yq11.223g"; transcript_id "HML3_Yq11.223g"; locus "HML3_Yq11.223g"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0269"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 22551106 22551877 5234 - . gene_id "HML3_Yq11.223g"; transcript_id "HML3_Yq11.223g"; locus "HML3_Yq11.223g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0269"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5246"; repStart "0"; chrY rmsk exon 22551894 22553265 9545 - . gene_id "HML3_Yq11.223g"; transcript_id "HML3_Yq11.223g"; locus "HML3_Yq11.223g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0269"; repClass "LTR"; repEnd "5165"; repFamily "ERVK"; repLeft "3785"; repStart "-856"; chrY rmsk exon 22553257 22553926 8710 - . gene_id "HML3_Yq11.223g"; transcript_id "HML3_Yq11.223g"; locus "HML3_Yq11.223g"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0269"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "807"; repStart "-4512"; ### HML3_Yq11.223h ### chrY rmsk gene 22553987 22555249 . - . gene_id "HML3_Yq11.223h"; transcript_id "HML3_Yq11.223h"; locus "HML3_Yq11.223h"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0270"; model_cov "805"; model_pct "13.4"; chrY rmsk exon 22553987 22554752 8710 - . gene_id "HML3_Yq11.223h"; transcript_id "HML3_Yq11.223h"; locus "HML3_Yq11.223h"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0270"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "704"; repStart "-4512"; chrY rmsk exon 22554753 22554809 2549 - . gene_id "HML3_Yq11.223h"; transcript_id "HML3_Yq11.223h"; locus "HML3_Yq11.223h"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0270"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "444"; repStart "0"; chrY rmsk exon 22554845 22555249 2549 - . gene_id "HML3_Yq11.223h"; transcript_id "HML3_Yq11.223h"; locus "HML3_Yq11.223h"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0270"; repClass "LTR"; repEnd "443"; repFamily "ERVK"; repLeft "2"; repStart "-69"; ### HERV3_Yq11.223e ### chrY rmsk gene 22564865 22573695 . - . gene_id "HERV3_Yq11.223e"; transcript_id "HERV3_Yq11.223e"; locus "HERV3_Yq11.223e"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0096"; model_cov "8211"; model_pct "97.4"; chrY rmsk exon 22564865 22565424 2611 - . gene_id "HERV3_Yq11.223e"; transcript_id "HERV3_Yq11.223e"; locus "HERV3_Yq11.223e"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0096"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 22565425 22568196 16322 - . gene_id "HERV3_Yq11.223e"; transcript_id "HERV3_Yq11.223e"; locus "HERV3_Yq11.223e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0096"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "5616"; repStart "0"; chrY rmsk exon 22568199 22573569 31877 - . gene_id "HERV3_Yq11.223e"; transcript_id "HERV3_Yq11.223e"; locus "HERV3_Yq11.223e"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0096"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "1"; repStart "-3024"; chrY rmsk exon 22573571 22573695 699 - . gene_id "HERV3_Yq11.223e"; transcript_id "HERV3_Yq11.223e"; locus "HERV3_Yq11.223e"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0096"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "472"; repStart "0"; ### HERV3_Yq11.223f ### chrY rmsk gene 22602384 22607890 . - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0097"; model_cov "4632"; model_pct "55.0"; chrY rmsk exon 22602384 22602885 2053 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "55"; repStart "0"; chrY rmsk exon 22602913 22603040 522 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "8409"; repFamily "ERV1"; repLeft "8283"; repStart "-17"; chrY rmsk exon 22603125 22604675 6748 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "3182"; repStart "-3666"; chrY rmsk exon 22604733 22605806 3293 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "2886"; repFamily "ERV1"; repLeft "1611"; repStart "-5540"; chrY rmsk exon 22605805 22607510 4923 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "1658"; repFamily "ERV1"; repLeft "5"; repStart "-6768"; chrY rmsk exon 22607515 22607890 1422 - . gene_id "HERV3_Yq11.223f"; transcript_id "HERV3_Yq11.223f"; locus "HERV3_Yq11.223f"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0097"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "204"; repStart "0"; ### HML3_Yq11.223i ### chrY rmsk gene 22616890 22618758 . + . gene_id "HML3_Yq11.223i"; transcript_id "HML3_Yq11.223i"; locus "HML3_Yq11.223i"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0271"; model_cov "1354"; model_pct "22.5"; chrY rmsk exon 22616890 22617330 3749 + . gene_id "HML3_Yq11.223i"; transcript_id "HML3_Yq11.223i"; locus "HML3_Yq11.223i"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0271"; repClass "LTR"; repEnd "455"; repFamily "ERVK"; repLeft "-58"; repStart "1"; chrY rmsk exon 22617369 22617425 3749 + . gene_id "HML3_Yq11.223i"; transcript_id "HML3_Yq11.223i"; locus "HML3_Yq11.223i"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0271"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "-1"; repStart "456"; chrY rmsk exon 22617426 22618003 3836 + . gene_id "HML3_Yq11.223i"; transcript_id "HML3_Yq11.223i"; locus "HML3_Yq11.223i"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0271"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chrY rmsk exon 22618004 22618758 5538 + . gene_id "HML3_Yq11.223i"; transcript_id "HML3_Yq11.223i"; locus "HML3_Yq11.223i"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0271"; repClass "LTR"; repEnd "2031"; repFamily "ERVK"; repLeft "-3990"; repStart "1280"; ### HML5_Yq11.223m ### chrY rmsk gene 22702898 22712410 . + . gene_id "HML5_Yq11.223m"; transcript_id "HML5_Yq11.223m"; locus "HML5_Yq11.223m"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0166"; model_cov "6792"; model_pct "99.3"; chrY rmsk exon 22702898 22705132 13599 + . gene_id "HML5_Yq11.223m"; transcript_id "HML5_Yq11.223m"; locus "HML5_Yq11.223m"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0166"; repClass "LTR"; repEnd "2271"; repFamily "ERVK"; repLeft "-4566"; repStart "46"; chrY rmsk exon 22705773 22708327 23801 + . gene_id "HML5_Yq11.223m"; transcript_id "HML5_Yq11.223m"; locus "HML5_Yq11.223m"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0166"; repClass "LTR"; repEnd "4773"; repFamily "ERVK"; repLeft "-2064"; repStart "2267"; chrY rmsk exon 22709880 22711841 23801 + . gene_id "HML5_Yq11.223m"; transcript_id "HML5_Yq11.223m"; locus "HML5_Yq11.223m"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0166"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "-2"; repStart "4774"; chrY rmsk exon 22711843 22712410 4018 + . gene_id "HML5_Yq11.223m"; transcript_id "HML5_Yq11.223m"; locus "HML5_Yq11.223m"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0166"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### LTR19_Yq11.223d ### chrY rmsk gene 22724143 22726110 . + . gene_id "LTR19_Yq11.223d"; transcript_id "LTR19_Yq11.223d"; locus "LTR19_Yq11.223d"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0091"; model_cov "1752"; model_pct "31.4"; chrY rmsk exon 22724143 22724426 1739 + . gene_id "LTR19_Yq11.223d"; transcript_id "LTR19_Yq11.223d"; locus "LTR19_Yq11.223d"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0091"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "0"; repStart "296"; chrY rmsk exon 22724427 22724740 3973 + . gene_id "LTR19_Yq11.223d"; transcript_id "LTR19_Yq11.223d"; locus "LTR19_Yq11.223d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0091"; repClass "LTR"; repEnd "330"; repFamily "ERV1"; repLeft "-5256"; repStart "1"; chrY rmsk exon 22724788 22725299 3973 + . gene_id "LTR19_Yq11.223d"; transcript_id "LTR19_Yq11.223d"; locus "LTR19_Yq11.223d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0091"; repClass "LTR"; repEnd "921"; repFamily "ERV1"; repLeft "-4665"; repStart "331"; chrY rmsk exon 22725286 22726110 4826 + . gene_id "LTR19_Yq11.223d"; transcript_id "LTR19_Yq11.223d"; locus "LTR19_Yq11.223d"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0091"; repClass "LTR"; repEnd "1962"; repFamily "ERV1"; repLeft "-3624"; repStart "1129"; ### LTR25_Yq11.223t ### chrY rmsk gene 22729148 22731117 . + . gene_id "LTR25_Yq11.223t"; transcript_id "LTR25_Yq11.223t"; locus "LTR25_Yq11.223t"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0212"; model_cov "1646"; model_pct "22.9"; chrY rmsk exon 22729148 22729248 1638 + . gene_id "LTR25_Yq11.223t"; transcript_id "LTR25_Yq11.223t"; locus "LTR25_Yq11.223t"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0212"; repClass "LTR"; repEnd "4613"; repFamily "ERV1"; repLeft "-2575"; repStart "4524"; chrY rmsk exon 22729558 22729847 1638 + . gene_id "LTR25_Yq11.223t"; transcript_id "LTR25_Yq11.223t"; locus "LTR25_Yq11.223t"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0212"; repClass "LTR"; repEnd "4896"; repFamily "ERV1"; repLeft "-2292"; repStart "4614"; chrY rmsk exon 22729846 22731117 5407 + . gene_id "LTR25_Yq11.223t"; transcript_id "LTR25_Yq11.223t"; locus "LTR25_Yq11.223t"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0212"; repClass "LTR"; repEnd "6629"; repFamily "ERV1"; repLeft "-559"; repStart "5354"; ### LTR19_Yq11.223e ### chrY rmsk gene 22731118 22732234 . + . gene_id "LTR19_Yq11.223e"; transcript_id "LTR19_Yq11.223e"; locus "LTR19_Yq11.223e"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0092"; model_cov "753"; model_pct "13.5"; chrY rmsk exon 22731118 22731356 1603 + . gene_id "LTR19_Yq11.223e"; transcript_id "LTR19_Yq11.223e"; locus "LTR19_Yq11.223e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0092"; repClass "LTR"; repEnd "4983"; repFamily "ERV1"; repLeft "-603"; repStart "4718"; chrY rmsk exon 22731418 22731658 1603 + . gene_id "LTR19_Yq11.223e"; transcript_id "LTR19_Yq11.223e"; locus "LTR19_Yq11.223e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0092"; repClass "LTR"; repEnd "5254"; repFamily "ERV1"; repLeft "-332"; repStart "4984"; chrY rmsk exon 22731655 22731879 1291 + . gene_id "LTR19_Yq11.223e"; transcript_id "LTR19_Yq11.223e"; locus "LTR19_Yq11.223e"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0092"; repClass "LTR"; repEnd "5585"; repFamily "ERV1"; repLeft "-1"; repStart "5367"; chrY rmsk exon 22731881 22732234 2069 + . gene_id "LTR19_Yq11.223e"; transcript_id "LTR19_Yq11.223e"; locus "LTR19_Yq11.223e"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0092"; repClass "LTR"; repEnd "366"; repFamily "ERV1"; repLeft "-214"; repStart "1"; ### HERV9_Yq11.223b ### chrY rmsk gene 22785419 22795665 . + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0228"; model_cov "8471"; model_pct "100.0"; chrY rmsk exon 22785419 22786565 7996 + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0228"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 22786566 22786629 377 + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0228"; repClass "LTR"; repEnd "64"; repFamily "ERV1"; repLeft "-8372"; repStart "1"; chrY rmsk exon 22786631 22794872 48944 + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0228"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "28"; chrY rmsk exon 22794873 22795032 958 + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0228"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "-1094"; repStart "1"; chrY rmsk exon 22795037 22795665 4223 + . gene_id "HERV9_Yq11.223b"; transcript_id "HERV9_Yq11.223b"; locus "HERV9_Yq11.223b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0228"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "-123"; repStart "466"; ### MER61_Yq11.223b ### chrY rmsk gene 22802775 22805437 . - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0443"; model_cov "1875"; model_pct "35.9"; chrY rmsk exon 22802775 22803652 4782 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0443"; repClass "LTR"; repEnd "2283"; repFamily "ERV1"; repLeft "1410"; repStart "-2934"; chrY rmsk exon 22803960 22804009 4782 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0443"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "1361"; repStart "-3808"; chrY rmsk exon 22804001 22804271 1784 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0443"; repClass "LTR"; repEnd "1217"; repFamily "ERV1"; repLeft "944"; repStart "-4000"; chrY rmsk exon 22804244 22804830 2073 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0443"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "297"; repStart "-4380"; chrY rmsk exon 22804908 22805050 574 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0443"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "2"; repStart "-5074"; chrY rmsk exon 22805051 22805437 1582 - . gene_id "MER61_Yq11.223b"; transcript_id "MER61_Yq11.223b"; locus "MER61_Yq11.223b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0443"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "59"; repStart "0"; ### HERVK11_Yq11.223a ### chrY rmsk gene 22829529 22834850 . - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0118"; model_cov "4128"; model_pct "51.9"; chrY rmsk exon 22829529 22829777 1359 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "984"; repStart "0"; chrY rmsk exon 22829778 22830869 8183 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "6604"; repFamily "ERVK"; repLeft "5525"; repStart "-1349"; chrY rmsk exon 22830868 22832332 11421 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "3128"; repStart "-3352"; chrY rmsk exon 22832333 22832948 4813 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "1782"; repFamily "ERVK"; repLeft "1165"; repStart "-6171"; chrY rmsk exon 22832949 22833517 2075 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "206"; repStart "-7102"; chrY rmsk exon 22833515 22833835 1972 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "5"; repStart "-7634"; chrY rmsk exon 22833842 22834850 4142 - . gene_id "HERVK11_Yq11.223a"; transcript_id "HERVK11_Yq11.223a"; locus "HERVK11_Yq11.223a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0118"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML5_Yq11.223n ### chrY rmsk gene 22944425 22948804 . + . gene_id "HML5_Yq11.223n"; transcript_id "HML5_Yq11.223n"; locus "HML5_Yq11.223n"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0168"; model_cov "2833"; model_pct "41.4"; chrY rmsk exon 22944425 22944817 2012 + . gene_id "HML5_Yq11.223n"; transcript_id "HML5_Yq11.223n"; locus "HML5_Yq11.223n"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0168"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "289"; chrY rmsk exon 22945347 22947146 5174 + . gene_id "HML5_Yq11.223n"; transcript_id "HML5_Yq11.223n"; locus "HML5_Yq11.223n"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0168"; repClass "LTR"; repEnd "3807"; repFamily "ERVK"; repLeft "-3030"; repStart "2027"; chrY rmsk exon 22947554 22948226 3175 + . gene_id "HML5_Yq11.223n"; transcript_id "HML5_Yq11.223n"; locus "HML5_Yq11.223n"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0168"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "-1734"; repStart "4456"; chrY rmsk exon 22948229 22948804 3390 + . gene_id "HML5_Yq11.223n"; transcript_id "HML5_Yq11.223n"; locus "HML5_Yq11.223n"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0168"; repClass "LTR"; repEnd "568"; repFamily "ERVK"; repLeft "-3"; repStart "3"; ### MER61_Yq11.223c ### chrY rmsk gene 22949491 22952990 . - . gene_id "MER61_Yq11.223c"; transcript_id "MER61_Yq11.223c"; locus "MER61_Yq11.223c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0444"; model_cov "3075"; model_pct "58.9"; chrY rmsk exon 22949491 22949924 1910 - . gene_id "MER61_Yq11.223c"; transcript_id "MER61_Yq11.223c"; locus "MER61_Yq11.223c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0444"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 22949925 22950278 6047 - . gene_id "MER61_Yq11.223c"; transcript_id "MER61_Yq11.223c"; locus "MER61_Yq11.223c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0444"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4825"; repStart "0"; chrY rmsk exon 22950382 22952990 8955 - . gene_id "MER61_Yq11.223c"; transcript_id "MER61_Yq11.223c"; locus "MER61_Yq11.223c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0444"; repClass "LTR"; repEnd "4824"; repFamily "ERV1"; repLeft "2141"; repStart "-393"; ### MER61_Yq11.223d ### chrY rmsk gene 23033153 23035071 . - . gene_id "MER61_Yq11.223d"; transcript_id "MER61_Yq11.223d"; locus "MER61_Yq11.223d"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0445"; model_cov "2547"; model_pct "48.8"; chrY rmsk exon 23033153 23033574 1943 - . gene_id "MER61_Yq11.223d"; transcript_id "MER61_Yq11.223d"; locus "MER61_Yq11.223d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0445"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 23033575 23035071 4325 - . gene_id "MER61_Yq11.223d"; transcript_id "MER61_Yq11.223d"; locus "MER61_Yq11.223d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0445"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "1610"; repStart "-1060"; ### MER61_Yq11.223e ### chrY rmsk gene 23065463 23069844 . - . gene_id "MER61_Yq11.223e"; transcript_id "MER61_Yq11.223e"; locus "MER61_Yq11.223e"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0446"; model_cov "3763"; model_pct "72.1"; chrY rmsk exon 23065463 23065896 1806 - . gene_id "MER61_Yq11.223e"; transcript_id "MER61_Yq11.223e"; locus "MER61_Yq11.223e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0446"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "6"; repStart "0"; chrY rmsk exon 23065902 23069624 12479 - . gene_id "MER61_Yq11.223e"; transcript_id "MER61_Yq11.223e"; locus "MER61_Yq11.223e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0446"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1454"; repStart "0"; chrY rmsk exon 23069669 23069844 1055 - . gene_id "MER61_Yq11.223e"; transcript_id "MER61_Yq11.223e"; locus "MER61_Yq11.223e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0446"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "1"; repStart "-251"; ### MER61_Yq11.223f ### chrY rmsk gene 23350860 23355241 . + . gene_id "MER61_Yq11.223f"; transcript_id "MER61_Yq11.223f"; locus "MER61_Yq11.223f"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0447"; model_cov "3763"; model_pct "72.1"; chrY rmsk exon 23350860 23351035 1055 + . gene_id "MER61_Yq11.223f"; transcript_id "MER61_Yq11.223f"; locus "MER61_Yq11.223f"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0447"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "-251"; repStart "1"; chrY rmsk exon 23351080 23354802 12493 + . gene_id "MER61_Yq11.223f"; transcript_id "MER61_Yq11.223f"; locus "MER61_Yq11.223f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0447"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1454"; chrY rmsk exon 23354808 23355241 1808 + . gene_id "MER61_Yq11.223f"; transcript_id "MER61_Yq11.223f"; locus "MER61_Yq11.223f"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0447"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "6"; ### HML5_Yq11.223o ### chrY rmsk gene 23483780 23493292 . - . gene_id "HML5_Yq11.223o"; transcript_id "HML5_Yq11.223o"; locus "HML5_Yq11.223o"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0169"; model_cov "6792"; model_pct "99.3"; chrY rmsk exon 23483780 23484347 4036 - . gene_id "HML5_Yq11.223o"; transcript_id "HML5_Yq11.223o"; locus "HML5_Yq11.223o"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0169"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 23484349 23486310 22459 - . gene_id "HML5_Yq11.223o"; transcript_id "HML5_Yq11.223o"; locus "HML5_Yq11.223o"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0169"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "4774"; repStart "-2"; chrY rmsk exon 23487863 23490417 22459 - . gene_id "HML5_Yq11.223o"; transcript_id "HML5_Yq11.223o"; locus "HML5_Yq11.223o"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0169"; repClass "LTR"; repEnd "4773"; repFamily "ERVK"; repLeft "2267"; repStart "-2064"; chrY rmsk exon 23491058 23493292 12764 - . gene_id "HML5_Yq11.223o"; transcript_id "HML5_Yq11.223o"; locus "HML5_Yq11.223o"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0169"; repClass "LTR"; repEnd "2271"; repFamily "ERVK"; repLeft "46"; repStart "-4566"; ### HML3_Yq11.223j ### chrY rmsk gene 23576918 23578786 . - . gene_id "HML3_Yq11.223j"; transcript_id "HML3_Yq11.223j"; locus "HML3_Yq11.223j"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0272"; model_cov "1354"; model_pct "22.5"; chrY rmsk exon 23576918 23577672 5508 - . gene_id "HML3_Yq11.223j"; transcript_id "HML3_Yq11.223j"; locus "HML3_Yq11.223j"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0272"; repClass "LTR"; repEnd "2031"; repFamily "ERVK"; repLeft "1280"; repStart "-3990"; chrY rmsk exon 23577673 23578250 3848 - . gene_id "HML3_Yq11.223j"; transcript_id "HML3_Yq11.223j"; locus "HML3_Yq11.223j"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0272"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "1"; repStart "-5417"; chrY rmsk exon 23578251 23578307 3749 - . gene_id "HML3_Yq11.223j"; transcript_id "HML3_Yq11.223j"; locus "HML3_Yq11.223j"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0272"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "457"; repStart "0"; chrY rmsk exon 23578346 23578786 3749 - . gene_id "HML3_Yq11.223j"; transcript_id "HML3_Yq11.223j"; locus "HML3_Yq11.223j"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0272"; repClass "LTR"; repEnd "456"; repFamily "ERVK"; repLeft "2"; repStart "-57"; ### HERV3_Yq11.223g ### chrY rmsk gene 23587796 23593299 . + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0098"; model_cov "4603"; model_pct "54.6"; chrY rmsk exon 23587796 23588172 1316 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "204"; chrY rmsk exon 23588177 23588603 1639 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "50"; repFamily "ERV1"; repLeft "-8376"; repStart "-370"; chrY rmsk exon 23588698 23589882 4506 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "1658"; repFamily "ERV1"; repLeft "-6768"; repStart "454"; chrY rmsk exon 23589881 23590950 3032 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "2886"; repFamily "ERV1"; repLeft "-5540"; repStart "1611"; chrY rmsk exon 23591008 23592558 6254 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "-3666"; repStart "3182"; chrY rmsk exon 23592643 23592770 491 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "8409"; repFamily "ERV1"; repLeft "-17"; repStart "8283"; chrY rmsk exon 23592798 23593299 1889 + . gene_id "HERV3_Yq11.223g"; transcript_id "HERV3_Yq11.223g"; locus "HERV3_Yq11.223g"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0098"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "55"; ### HERV3_Yq11.223h ### chrY rmsk gene 23621987 23630818 . + . gene_id "HERV3_Yq11.223h"; transcript_id "HERV3_Yq11.223h"; locus "HERV3_Yq11.223h"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0099"; model_cov "8211"; model_pct "97.4"; chrY rmsk exon 23621987 23622111 699 + . gene_id "HERV3_Yq11.223h"; transcript_id "HERV3_Yq11.223h"; locus "HERV3_Yq11.223h"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0099"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "0"; repStart "472"; chrY rmsk exon 23622113 23627483 31877 + . gene_id "HERV3_Yq11.223h"; transcript_id "HERV3_Yq11.223h"; locus "HERV3_Yq11.223h"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0099"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-3024"; repStart "1"; chrY rmsk exon 23627486 23630257 16306 + . gene_id "HERV3_Yq11.223h"; transcript_id "HERV3_Yq11.223h"; locus "HERV3_Yq11.223h"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0099"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "5616"; chrY rmsk exon 23630258 23630818 2630 + . gene_id "HERV3_Yq11.223h"; transcript_id "HERV3_Yq11.223h"; locus "HERV3_Yq11.223h"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0099"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML3_Yq11.223k ### chrY rmsk gene 23640445 23645057 . + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0273"; model_cov "3662"; model_pct "60.8"; chrY rmsk exon 23640445 23640849 2530 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-70"; repStart "1"; chrY rmsk exon 23640875 23640931 2530 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "-1"; repStart "443"; chrY rmsk exon 23640932 23641697 8732 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "804"; repFamily "ERVK"; repLeft "-5217"; repStart "1"; chrY rmsk exon 23641758 23642427 8732 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "-4512"; repStart "805"; chrY rmsk exon 23642419 23643790 9535 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "5165"; repFamily "ERVK"; repLeft "-856"; repStart "3785"; chrY rmsk exon 23643807 23644578 5203 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "0"; repStart "5246"; chrY rmsk exon 23644579 23645057 2925 + . gene_id "HML3_Yq11.223k"; transcript_id "HML3_Yq11.223k"; locus "HML3_Yq11.223k"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0273"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVK11_Yq11.223b ### chrY rmsk gene 23720452 23723044 . + . gene_id "HERVK11_Yq11.223b"; transcript_id "HERVK11_Yq11.223b"; locus "HERVK11_Yq11.223b"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0119"; model_cov "1645"; model_pct "20.7"; chrY rmsk exon 23720452 23721092 4673 + . gene_id "HERVK11_Yq11.223b"; transcript_id "HERVK11_Yq11.223b"; locus "HERVK11_Yq11.223b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0119"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "-1188"; repStart "6116"; chrY rmsk exon 23721080 23721961 5834 + . gene_id "HERVK11_Yq11.223b"; transcript_id "HERVK11_Yq11.223b"; locus "HERVK11_Yq11.223b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0119"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "0"; repStart "6957"; chrY rmsk exon 23721962 23723044 6894 + . gene_id "HERVK11_Yq11.223b"; transcript_id "HERVK11_Yq11.223b"; locus "HERVK11_Yq11.223b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0119"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_Yq11.23a ### chrY rmsk gene 23818800 23823486 . - . gene_id "HML6_Yq11.23a"; transcript_id "HML6_Yq11.23a"; locus "HML6_Yq11.23a"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0115"; model_cov "4089"; model_pct "56.8"; chrY rmsk exon 23818800 23819218 1621 - . gene_id "HML6_Yq11.23a"; transcript_id "HML6_Yq11.23a"; locus "HML6_Yq11.23a"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0115"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chrY rmsk exon 23819225 23820894 6195 - . gene_id "HML6_Yq11.23a"; transcript_id "HML6_Yq11.23a"; locus "HML6_Yq11.23a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0115"; repClass "LTR"; repEnd "7196"; repFamily "ERVK"; repLeft "5520"; repStart "-6"; chrY rmsk exon 23821027 23823486 10716 - . gene_id "HML6_Yq11.23a"; transcript_id "HML6_Yq11.23a"; locus "HML6_Yq11.23a"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0115"; repClass "LTR"; repEnd "5284"; repFamily "ERVK"; repLeft "2871"; repStart "-1918"; ### HERVS71_Yq11.23a ### chrY rmsk gene 23824419 23833577 . + . gene_id "HERVS71_Yq11.23a"; transcript_id "HERVS71_Yq11.23a"; locus "HERVS71_Yq11.23a"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0061"; model_cov "8578"; model_pct "95.5"; chrY rmsk exon 23824419 23824587 37166 + . gene_id "HERVS71_Yq11.23a"; transcript_id "HERVS71_Yq11.23a"; locus "HERVS71_Yq11.23a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0061"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "-8504"; repStart "330"; chrY rmsk exon 23824614 23833013 37166 + . gene_id "HERVS71_Yq11.23a"; transcript_id "HERVS71_Yq11.23a"; locus "HERVS71_Yq11.23a"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0061"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "475"; chrY rmsk exon 23833014 23833577 3459 + . gene_id "HERVS71_Yq11.23a"; transcript_id "HERVS71_Yq11.23a"; locus "HERVS71_Yq11.23a"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0061"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_Yq11.23a ### chrY rmsk gene 23834654 23835989 . + . gene_id "HUERSP3_Yq11.23a"; transcript_id "HUERSP3_Yq11.23a"; locus "HUERSP3_Yq11.23a"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0264"; model_cov "1358"; model_pct "15.2"; chrY rmsk exon 23834654 23835989 3147 + . gene_id "HUERSP3_Yq11.23a"; transcript_id "HUERSP3_Yq11.23a"; locus "HUERSP3_Yq11.23a"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0264"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-5866"; repStart "1695"; ### LTR25_Yq11.23a ### chrY rmsk gene 23835994 23838654 . - . gene_id "LTR25_Yq11.23a"; transcript_id "LTR25_Yq11.23a"; locus "LTR25_Yq11.23a"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0215"; model_cov "1855"; model_pct "25.8"; chrY rmsk exon 23835994 23836547 998 - . gene_id "LTR25_Yq11.23a"; transcript_id "LTR25_Yq11.23a"; locus "LTR25_Yq11.23a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0215"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "268"; repStart "-2"; chrY rmsk exon 23836591 23836662 359 - . gene_id "LTR25_Yq11.23a"; transcript_id "LTR25_Yq11.23a"; locus "LTR25_Yq11.23a"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0215"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "220"; repStart "-553"; chrY rmsk exon 23836789 23837716 3020 - . gene_id "LTR25_Yq11.23a"; transcript_id "LTR25_Yq11.23a"; locus "LTR25_Yq11.23a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0215"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "6235"; repStart "-23"; chrY rmsk exon 23837722 23838654 3034 - . gene_id "LTR25_Yq11.23a"; transcript_id "LTR25_Yq11.23a"; locus "LTR25_Yq11.23a"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0215"; repClass "LTR"; repEnd "1883"; repFamily "ERV1"; repLeft "958"; repStart "-5305"; ### LTR25_Yq11.23b ### chrY rmsk gene 23838666 23848607 . + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0216"; model_cov "7774"; model_pct "100.0"; chrY rmsk exon 23838666 23838989 1222 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "354"; repFamily "ERV1"; repLeft "-490"; repStart "12"; chrY rmsk exon 23838962 23839375 1315 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "475"; chrY rmsk exon 23839453 23841030 5580 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "1881"; repFamily "ERV1"; repLeft "-5307"; repStart "253"; chrY rmsk exon 23842417 23843310 2965 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 23843410 23844487 5458 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "3265"; repFamily "ERV1"; repLeft "-3923"; repStart "3012"; chrY rmsk exon 23844806 23847760 9334 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "1295"; chrY rmsk exon 23847770 23848607 3145 + . gene_id "LTR25_Yq11.23b"; transcript_id "LTR25_Yq11.23b"; locus "LTR25_Yq11.23b"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0216"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "10"; ### HUERSP3_Yq11.23b ### chrY rmsk gene 23841022 23843337 . + . gene_id "HUERSP3_Yq11.23b"; transcript_id "HUERSP3_Yq11.23b"; locus "HUERSP3_Yq11.23b"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0265"; model_cov "1450"; model_pct "16.3"; chrY rmsk exon 23841022 23842416 3356 + . gene_id "HUERSP3_Yq11.23b"; transcript_id "HUERSP3_Yq11.23b"; locus "HUERSP3_Yq11.23b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0265"; repClass "LTR"; repEnd "3190"; repFamily "ERV1"; repLeft "-5729"; repStart "1765"; chrY rmsk exon 23843311 23843337 3356 + . gene_id "HUERSP3_Yq11.23b"; transcript_id "HUERSP3_Yq11.23b"; locus "HUERSP3_Yq11.23b"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0265"; repClass "LTR"; repEnd "3216"; repFamily "ERV1"; repLeft "-5703"; repStart "3191"; ### LTR25_Yq11.23c ### chrY rmsk gene 23849516 23852913 . - . gene_id "LTR25_Yq11.23c"; transcript_id "LTR25_Yq11.23c"; locus "LTR25_Yq11.23c"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0218"; model_cov "2370"; model_pct "33.0"; chrY rmsk exon 23849516 23851858 7487 - . gene_id "LTR25_Yq11.23c"; transcript_id "LTR25_Yq11.23c"; locus "LTR25_Yq11.23c"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0218"; repClass "LTR"; repEnd "2415"; repFamily "ERV1"; repLeft "45"; repStart "-4773"; chrY rmsk exon 23852217 23852913 1247 - . gene_id "LTR25_Yq11.23c"; transcript_id "LTR25_Yq11.23c"; locus "LTR25_Yq11.23c"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0218"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "101"; repStart "-2"; ### LTR25_Yq11.23d ### chrY rmsk gene 23852957 23853694 . + . gene_id "LTR25_Yq11.23d"; transcript_id "LTR25_Yq11.23d"; locus "LTR25_Yq11.23d"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0219"; model_cov "719"; model_pct "10.0"; chrY rmsk exon 23852957 23853694 2027 + . gene_id "LTR25_Yq11.23d"; transcript_id "LTR25_Yq11.23d"; locus "LTR25_Yq11.23d"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0219"; repClass "LTR"; repEnd "2565"; repFamily "ERV1"; repLeft "-4623"; repStart "1846"; ### HERVL_Yq11.23a ### chrY rmsk gene 23869423 23873598 . - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1447"; model_cov "3453"; model_pct "61.1"; chrY rmsk exon 23869423 23869751 1562 - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1447"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "3"; repStart "-98"; chrY rmsk exon 23869753 23870062 1606 - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1447"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5339"; repStart "0"; chrY rmsk exon 23870071 23872242 16831 - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1447"; repClass "LTR"; repEnd "3141"; repFamily "ERVL"; repLeft "934"; repStart "-2513"; chrY rmsk exon 23872285 23873181 16831 - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1447"; repClass "LTR"; repEnd "933"; repFamily "ERVL"; repLeft "2"; repStart "-4721"; chrY rmsk exon 23873182 23873598 1948 - . gene_id "HERVL_Yq11.23a"; transcript_id "HERVL_Yq11.23a"; locus "HERVL_Yq11.23a"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1447"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### LTR19_Yq11.23 ### chrY rmsk gene 23952928 23954031 . + . gene_id "LTR19_Yq11.23"; transcript_id "LTR19_Yq11.23"; locus "LTR19_Yq11.23"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0093"; model_cov "557"; model_pct "10.0"; chrY rmsk exon 23952928 23953042 647 + . gene_id "LTR19_Yq11.23"; transcript_id "LTR19_Yq11.23"; locus "LTR19_Yq11.23"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0093"; repClass "LTR"; repEnd "115"; repFamily "ERV1"; repLeft "-465"; repStart "1"; chrY rmsk exon 23953036 23953363 1760 + . gene_id "LTR19_Yq11.23"; transcript_id "LTR19_Yq11.23"; locus "LTR19_Yq11.23"; repName "LTR19B"; geneRegion "ltr"; locid "LTR19-int_0093"; repClass "LTR"; repEnd "580"; repFamily "ERV1"; repLeft "0"; repStart "238"; chrY rmsk exon 23953364 23953608 1448 + . gene_id "LTR19_Yq11.23"; transcript_id "LTR19_Yq11.23"; locus "LTR19_Yq11.23"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0093"; repClass "LTR"; repEnd "261"; repFamily "ERV1"; repLeft "-5325"; repStart "1"; chrY rmsk exon 23953737 23954031 1553 + . gene_id "LTR19_Yq11.23"; transcript_id "LTR19_Yq11.23"; locus "LTR19_Yq11.23"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0093"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "-4975"; repStart "314"; ### HML6_Yq11.23b ### chrY rmsk gene 24016101 24020788 . - . gene_id "HML6_Yq11.23b"; transcript_id "HML6_Yq11.23b"; locus "HML6_Yq11.23b"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0117"; model_cov "4058"; model_pct "56.3"; chrY rmsk exon 24016101 24016526 2037 - . gene_id "HML6_Yq11.23b"; transcript_id "HML6_Yq11.23b"; locus "HML6_Yq11.23b"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0117"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chrY rmsk exon 24016834 24020788 17138 - . gene_id "HML6_Yq11.23b"; transcript_id "HML6_Yq11.23b"; locus "HML6_Yq11.23b"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0117"; repClass "LTR"; repEnd "7198"; repFamily "ERVK"; repLeft "3140"; repStart "-4"; ### LTR25_Yq11.23e ### chrY rmsk gene 24021623 24022981 . - . gene_id "LTR25_Yq11.23e"; transcript_id "LTR25_Yq11.23e"; locus "LTR25_Yq11.23e"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0221"; model_cov "1337"; model_pct "18.6"; chrY rmsk exon 24021623 24022227 1926 - . gene_id "LTR25_Yq11.23e"; transcript_id "LTR25_Yq11.23e"; locus "LTR25_Yq11.23e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0221"; repClass "LTR"; repEnd "1432"; repFamily "ERV1"; repLeft "835"; repStart "-5756"; chrY rmsk exon 24022247 24022981 2628 - . gene_id "LTR25_Yq11.23e"; transcript_id "LTR25_Yq11.23e"; locus "LTR25_Yq11.23e"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0221"; repClass "LTR"; repEnd "764"; repFamily "ERV1"; repLeft "24"; repStart "-6424"; ### HUERSP3_Yq11.23c ### chrY rmsk gene 24024764 24026098 . + . gene_id "HUERSP3_Yq11.23c"; transcript_id "HUERSP3_Yq11.23c"; locus "HUERSP3_Yq11.23c"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0266"; model_cov "1358"; model_pct "15.2"; chrY rmsk exon 24024764 24026098 3486 + . gene_id "HUERSP3_Yq11.23c"; transcript_id "HUERSP3_Yq11.23c"; locus "HUERSP3_Yq11.23c"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0266"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "-5866"; repStart "1695"; ### LTR25_Yq11.23f ### chrY rmsk gene 24026100 24029710 . - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0223"; model_cov "1854"; model_pct "25.8"; chrY rmsk exon 24026100 24026595 1201 - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0223"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "273"; repStart "-2"; chrY rmsk exon 24026647 24026718 297 - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0223"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "220"; repStart "-553"; chrY rmsk exon 24026840 24027688 3095 - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0223"; repClass "LTR"; repEnd "7166"; repFamily "ERV1"; repLeft "6315"; repStart "-22"; chrY rmsk exon 24028691 24028770 3095 - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0223"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "6235"; repStart "-874"; chrY rmsk exon 24028776 24029710 3252 - . gene_id "LTR25_Yq11.23f"; transcript_id "LTR25_Yq11.23f"; locus "LTR25_Yq11.23f"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0223"; repClass "LTR"; repEnd "1883"; repFamily "ERV1"; repLeft "959"; repStart "-5305"; ### LTR25_Yq11.23g ### chrY rmsk gene 24029723 24039904 . + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0224"; model_cov "8916"; model_pct "100.0"; chrY rmsk exon 24029723 24030574 3243 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "12"; chrY rmsk exon 24030708 24033599 8531 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "1388"; repFamily "ERV1"; repLeft "-5800"; repStart "-1449"; chrY rmsk exon 24033640 24033706 3846 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "1458"; repFamily "ERV1"; repLeft "-5730"; repStart "1389"; chrY rmsk exon 24033707 24034599 3029 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 24034600 24034632 3846 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "1484"; repFamily "ERV1"; repLeft "-5704"; repStart "1444"; chrY rmsk exon 24034672 24035810 5604 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "3260"; repFamily "ERV1"; repLeft "-3928"; repStart "3188"; chrY rmsk exon 24036098 24039060 10142 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "0"; repStart "1290"; chrY rmsk exon 24039070 24039904 2762 + . gene_id "LTR25_Yq11.23g"; transcript_id "LTR25_Yq11.23g"; locus "LTR25_Yq11.23g"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0224"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "0"; repStart "10"; ### LTR25_Yq11.23h ### chrY rmsk gene 24039908 24043671 . - . gene_id "LTR25_Yq11.23h"; transcript_id "LTR25_Yq11.23h"; locus "LTR25_Yq11.23h"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0225"; model_cov "2722"; model_pct "37.9"; chrY rmsk exon 24039908 24042670 8014 - . gene_id "LTR25_Yq11.23h"; transcript_id "LTR25_Yq11.23h"; locus "LTR25_Yq11.23h"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0225"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "67"; repStart "-4399"; chrY rmsk exon 24043069 24043671 1256 - . gene_id "LTR25_Yq11.23h"; transcript_id "LTR25_Yq11.23h"; locus "LTR25_Yq11.23h"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0225"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "120"; repStart "-2"; ### HERVL_Yq11.23b ### chrY rmsk gene 24069956 24074662 . - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1448"; model_cov "4214"; model_pct "74.5"; chrY rmsk exon 24069956 24070332 1486 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "1"; repStart "-41"; chrY rmsk exon 24070333 24072203 11009 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3810"; repStart "0"; chrY rmsk exon 24072198 24072586 2254 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "3201"; repStart "-2058"; chrY rmsk exon 24072575 24072728 905 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "4503"; repStart "-998"; chrY rmsk exon 24072727 24074508 9406 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "1378"; repStart "-2454"; chrY rmsk exon 24074510 24074662 805 - . gene_id "HERVL_Yq11.23b"; transcript_id "HERVL_Yq11.23b"; locus "HERVL_Yq11.23b"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1448"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "1"; repStart "-291"; ### HERVL_Yq11.23c ### chrY rmsk gene 24092833 24098071 . + . gene_id "HERVL_Yq11.23c"; transcript_id "HERVL_Yq11.23c"; locus "HERVL_Yq11.23c"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1449"; model_cov "4930"; model_pct "87.2"; chrY rmsk exon 24092833 24097197 18558 + . gene_id "HERVL_Yq11.23c"; transcript_id "HERVL_Yq11.23c"; locus "HERVL_Yq11.23c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1449"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "-429"; repStart "714"; chrY rmsk exon 24097471 24097879 2144 + . gene_id "HERVL_Yq11.23c"; transcript_id "HERVL_Yq11.23c"; locus "HERVL_Yq11.23c"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1449"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5235"; chrY rmsk exon 24097880 24098071 809 + . gene_id "HERVL_Yq11.23c"; transcript_id "HERVL_Yq11.23c"; locus "HERVL_Yq11.23c"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1449"; repClass "LTR"; repEnd "203"; repFamily "ERVL"; repLeft "-241"; repStart "1"; ### HML6_Yq11.23c ### chrY rmsk gene 24116909 24121513 . + . gene_id "HML6_Yq11.23c"; transcript_id "HML6_Yq11.23c"; locus "HML6_Yq11.23c"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0118"; model_cov "4328"; model_pct "60.1"; chrY rmsk exon 24116909 24121078 15274 + . gene_id "HML6_Yq11.23c"; transcript_id "HML6_Yq11.23c"; locus "HML6_Yq11.23c"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0118"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "2872"; chrY rmsk exon 24121081 24121513 1996 + . gene_id "HML6_Yq11.23c"; transcript_id "HML6_Yq11.23c"; locus "HML6_Yq11.23c"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0118"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_Yq11.23d ### chrY rmsk gene 24131605 24136209 . - . gene_id "HML6_Yq11.23d"; transcript_id "HML6_Yq11.23d"; locus "HML6_Yq11.23d"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0119"; model_cov "4328"; model_pct "60.1"; chrY rmsk exon 24131605 24132037 1996 - . gene_id "HML6_Yq11.23d"; transcript_id "HML6_Yq11.23d"; locus "HML6_Yq11.23d"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0119"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 24132040 24136209 15328 - . gene_id "HML6_Yq11.23d"; transcript_id "HML6_Yq11.23d"; locus "HML6_Yq11.23d"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0119"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "2872"; repStart "-2"; ### HML2_Yq11.23a ### chrY rmsk gene 24251690 24254888 . - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0130"; model_cov "3385"; model_pct "44.9"; chrY rmsk exon 24251690 24254888 11436 - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0130"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "2808"; repStart "-1343"; ### HERV9_Yq11.23a ### chrY rmsk gene 24419168 24429415 . + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0229"; model_cov "8471"; model_pct "100.0"; chrY rmsk exon 24419168 24420314 7377 + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0229"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "0"; repStart "1"; chrY rmsk exon 24420315 24420378 370 + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0229"; repClass "LTR"; repEnd "64"; repFamily "ERV1"; repLeft "-8372"; repStart "1"; chrY rmsk exon 24420380 24428622 48203 + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0229"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "28"; chrY rmsk exon 24428623 24428782 967 + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0229"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "-1094"; repStart "1"; chrY rmsk exon 24428787 24429415 4173 + . gene_id "HERV9_Yq11.23a"; transcript_id "HERV9_Yq11.23a"; locus "HERV9_Yq11.23a"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0229"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "-123"; repStart "466"; ### MER61_Yq11.23a ### chrY rmsk gene 24436541 24439183 . - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0448"; model_cov "1868"; model_pct "35.8"; chrY rmsk exon 24436541 24437398 4619 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0448"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "1410"; repStart "-2958"; chrY rmsk exon 24437706 24437755 4619 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0448"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "1361"; repStart "-3808"; chrY rmsk exon 24437747 24438017 1736 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0448"; repClass "LTR"; repEnd "1217"; repFamily "ERV1"; repLeft "944"; repStart "-4000"; chrY rmsk exon 24438005 24438593 2064 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0448"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "280"; repStart "-4380"; chrY rmsk exon 24438654 24438796 563 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0448"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "2"; repStart "-5074"; chrY rmsk exon 24438797 24439183 1575 - . gene_id "MER61_Yq11.23a"; transcript_id "MER61_Yq11.23a"; locus "MER61_Yq11.23a"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0448"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "59"; repStart "0"; ### HERVK11_Yq11.23a ### chrY rmsk gene 24463277 24468598 . - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0120"; model_cov "4130"; model_pct "51.9"; chrY rmsk exon 24463277 24463525 1359 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "984"; repStart "0"; chrY rmsk exon 24463526 24464617 8183 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "6604"; repFamily "ERVK"; repLeft "5525"; repStart "-1349"; chrY rmsk exon 24464616 24466080 11421 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "3128"; repStart "-3352"; chrY rmsk exon 24466081 24466696 4813 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "1782"; repFamily "ERVK"; repLeft "1165"; repStart "-6171"; chrY rmsk exon 24466697 24467265 2075 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "206"; repStart "-7102"; chrY rmsk exon 24467261 24467583 2118 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "321"; repFamily "ERVK"; repLeft "5"; repStart "-7632"; chrY rmsk exon 24467590 24468598 4280 - . gene_id "HERVK11_Yq11.23a"; transcript_id "HERVK11_Yq11.23a"; locus "HERVK11_Yq11.23a"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0120"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML5_Yq11.23a ### chrY rmsk gene 24578183 24582562 . + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0171"; model_cov "2979"; model_pct "43.6"; chrY rmsk exon 24578183 24578575 2015 + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0171"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "289"; chrY rmsk exon 24578971 24579109 593 + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0171"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "-4364"; repStart "2327"; chrY rmsk exon 24579105 24580904 5214 + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0171"; repClass "LTR"; repEnd "3807"; repFamily "ERVK"; repLeft "-3030"; repStart "2027"; chrY rmsk exon 24581312 24581984 3244 + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0171"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "-1734"; repStart "4456"; chrY rmsk exon 24581987 24582562 3587 + . gene_id "HML5_Yq11.23a"; transcript_id "HML5_Yq11.23a"; locus "HML5_Yq11.23a"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0171"; repClass "LTR"; repEnd "568"; repFamily "ERVK"; repLeft "-3"; repStart "3"; ### MER61_Yq11.23b ### chrY rmsk gene 24583248 24586734 . - . gene_id "MER61_Yq11.23b"; transcript_id "MER61_Yq11.23b"; locus "MER61_Yq11.23b"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0449"; model_cov "3075"; model_pct "58.9"; chrY rmsk exon 24583248 24583681 2049 - . gene_id "MER61_Yq11.23b"; transcript_id "MER61_Yq11.23b"; locus "MER61_Yq11.23b"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0449"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 24583682 24584035 4565 - . gene_id "MER61_Yq11.23b"; transcript_id "MER61_Yq11.23b"; locus "MER61_Yq11.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0449"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4822"; repStart "0"; chrY rmsk exon 24584129 24586734 9060 - . gene_id "MER61_Yq11.23b"; transcript_id "MER61_Yq11.23b"; locus "MER61_Yq11.23b"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0449"; repClass "LTR"; repEnd "4821"; repFamily "ERV1"; repLeft "2141"; repStart "-396"; ### MER61_Yq11.23c ### chrY rmsk gene 24666897 24668815 . - . gene_id "MER61_Yq11.23c"; transcript_id "MER61_Yq11.23c"; locus "MER61_Yq11.23c"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0450"; model_cov "2547"; model_pct "48.8"; chrY rmsk exon 24666897 24667318 2118 - . gene_id "MER61_Yq11.23c"; transcript_id "MER61_Yq11.23c"; locus "MER61_Yq11.23c"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0450"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 24667319 24668815 4696 - . gene_id "MER61_Yq11.23c"; transcript_id "MER61_Yq11.23c"; locus "MER61_Yq11.23c"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0450"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "1610"; repStart "-1060"; ### MER61_Yq11.23d ### chrY rmsk gene 24699208 24703588 . - . gene_id "MER61_Yq11.23d"; transcript_id "MER61_Yq11.23d"; locus "MER61_Yq11.23d"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0451"; model_cov "3763"; model_pct "72.1"; chrY rmsk exon 24699208 24699641 1806 - . gene_id "MER61_Yq11.23d"; transcript_id "MER61_Yq11.23d"; locus "MER61_Yq11.23d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0451"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "6"; repStart "0"; chrY rmsk exon 24699647 24703368 12479 - . gene_id "MER61_Yq11.23d"; transcript_id "MER61_Yq11.23d"; locus "MER61_Yq11.23d"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0451"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "1454"; repStart "0"; chrY rmsk exon 24703413 24703588 1055 - . gene_id "MER61_Yq11.23d"; transcript_id "MER61_Yq11.23d"; locus "MER61_Yq11.23d"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0451"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "1"; repStart "-251"; ### MER61_Yq11.23e ### chrY rmsk gene 24966519 24970900 . + . gene_id "MER61_Yq11.23e"; transcript_id "MER61_Yq11.23e"; locus "MER61_Yq11.23e"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0452"; model_cov "3763"; model_pct "72.1"; chrY rmsk exon 24966519 24966694 1055 + . gene_id "MER61_Yq11.23e"; transcript_id "MER61_Yq11.23e"; locus "MER61_Yq11.23e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0452"; repClass "LTR"; repEnd "176"; repFamily "ERV1"; repLeft "-251"; repStart "1"; chrY rmsk exon 24966739 24970461 12479 + . gene_id "MER61_Yq11.23e"; transcript_id "MER61_Yq11.23e"; locus "MER61_Yq11.23e"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0452"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "1454"; chrY rmsk exon 24970467 24970900 1806 + . gene_id "MER61_Yq11.23e"; transcript_id "MER61_Yq11.23e"; locus "MER61_Yq11.23e"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0452"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "6"; ### MER61_Yq11.23f ### chrY rmsk gene 25001289 25003207 . + . gene_id "MER61_Yq11.23f"; transcript_id "MER61_Yq11.23f"; locus "MER61_Yq11.23f"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0453"; model_cov "1619"; model_pct "31.0"; chrY rmsk exon 25001289 25002785 4696 + . gene_id "MER61_Yq11.23f"; transcript_id "MER61_Yq11.23f"; locus "MER61_Yq11.23f"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0453"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "0"; repStart "3598"; chrY rmsk exon 25002786 25003207 2118 + . gene_id "MER61_Yq11.23f"; transcript_id "MER61_Yq11.23f"; locus "MER61_Yq11.23f"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0453"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER61_Yq11.23g ### chrY rmsk gene 25083356 25086846 . + . gene_id "MER61_Yq11.23g"; transcript_id "MER61_Yq11.23g"; locus "MER61_Yq11.23g"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0454"; model_cov "3076"; model_pct "59.0"; chrY rmsk exon 25083356 25085964 8950 + . gene_id "MER61_Yq11.23g"; transcript_id "MER61_Yq11.23g"; locus "MER61_Yq11.23g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0454"; repClass "LTR"; repEnd "4823"; repFamily "ERV1"; repLeft "-394"; repStart "2139"; chrY rmsk exon 25086059 25086412 6087 + . gene_id "MER61_Yq11.23g"; transcript_id "MER61_Yq11.23g"; locus "MER61_Yq11.23g"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0454"; repClass "LTR"; repEnd "5216"; repFamily "ERV1"; repLeft "-1"; repStart "4824"; chrY rmsk exon 25086413 25086846 1910 + . gene_id "MER61_Yq11.23g"; transcript_id "MER61_Yq11.23g"; locus "MER61_Yq11.23g"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0454"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_Yq11.23b ### chrY rmsk gene 25087532 25091911 . - . gene_id "HML5_Yq11.23b"; transcript_id "HML5_Yq11.23b"; locus "HML5_Yq11.23b"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0172"; model_cov "2833"; model_pct "41.4"; chrY rmsk exon 25087532 25088107 3390 - . gene_id "HML5_Yq11.23b"; transcript_id "HML5_Yq11.23b"; locus "HML5_Yq11.23b"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0172"; repClass "LTR"; repEnd "568"; repFamily "ERVK"; repLeft "3"; repStart "-3"; chrY rmsk exon 25088110 25088782 3175 - . gene_id "HML5_Yq11.23b"; transcript_id "HML5_Yq11.23b"; locus "HML5_Yq11.23b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0172"; repClass "LTR"; repEnd "5103"; repFamily "ERVK"; repLeft "4456"; repStart "-1734"; chrY rmsk exon 25089190 25090989 5174 - . gene_id "HML5_Yq11.23b"; transcript_id "HML5_Yq11.23b"; locus "HML5_Yq11.23b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0172"; repClass "LTR"; repEnd "3807"; repFamily "ERVK"; repLeft "2027"; repStart "-3030"; chrY rmsk exon 25091519 25091911 2012 - . gene_id "HML5_Yq11.23b"; transcript_id "HML5_Yq11.23b"; locus "HML5_Yq11.23b"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0172"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "289"; repStart "-6142"; ### HERVK11_Yq11.23b ### chrY rmsk gene 25201510 25206831 . + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; category "prototype"; intModel "HERVK11-int"; locid "HERVK11-int_0121"; model_cov "4128"; model_pct "51.9"; chrY rmsk exon 25201510 25202518 3822 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrY rmsk exon 25202525 25202845 1972 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "319"; repFamily "ERVK"; repLeft "-7634"; repStart "5"; chrY rmsk exon 25202843 25203411 1935 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "851"; repFamily "ERVK"; repLeft "-7102"; repStart "206"; chrY rmsk exon 25203412 25204027 4487 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "1782"; repFamily "ERVK"; repLeft "-6171"; repStart "1165"; chrY rmsk exon 25204028 25205492 10614 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "4601"; repFamily "ERVK"; repLeft "-3352"; repStart "3128"; chrY rmsk exon 25205491 25206582 7596 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "6604"; repFamily "ERVK"; repLeft "-1349"; repStart "5525"; chrY rmsk exon 25206583 25206831 1250 + . gene_id "HERVK11_Yq11.23b"; transcript_id "HERVK11_Yq11.23b"; locus "HERVK11_Yq11.23b"; repName "MER11B"; geneRegion "ltr"; locid "HERVK11-int_0121"; repClass "LTR"; repEnd "1236"; repFamily "ERVK"; repLeft "0"; repStart "984"; ### MER61_Yq11.23h ### chrY rmsk gene 25230926 25233569 . + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; category "oneside"; intModel "MER61-int"; locid "MER61-int_0455"; model_cov "1847"; model_pct "35.4"; chrY rmsk exon 25230926 25231312 1446 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0455"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "0"; repStart "59"; chrY rmsk exon 25231330 25231455 527 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0455"; repClass "LTR"; repEnd "143"; repFamily "ERV1"; repLeft "-5074"; repStart "19"; chrY rmsk exon 25231516 25232105 1892 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0455"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "-4380"; repStart "280"; chrY rmsk exon 25232093 25232359 1642 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0455"; repClass "LTR"; repEnd "1213"; repFamily "ERV1"; repLeft "-4004"; repStart "944"; chrY rmsk exon 25232355 25232404 4356 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0455"; repClass "LTR"; repEnd "1409"; repFamily "ERV1"; repLeft "-3808"; repStart "1361"; chrY rmsk exon 25232712 25233569 4356 + . gene_id "MER61_Yq11.23h"; transcript_id "MER61_Yq11.23h"; locus "MER61_Yq11.23h"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0455"; repClass "LTR"; repEnd "2259"; repFamily "ERV1"; repLeft "-2958"; repStart "1410"; ### HERV9_Yq11.23b ### chrY rmsk gene 25240699 25250946 . - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0230"; model_cov "8471"; model_pct "100.0"; chrY rmsk exon 25240699 25241327 3938 - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0230"; repClass "LTR"; repEnd "1131"; repFamily "ERV1"; repLeft "466"; repStart "-123"; chrY rmsk exon 25241332 25241491 909 - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0230"; repClass "LTR"; repEnd "160"; repFamily "ERV1"; repLeft "1"; repStart "-1094"; chrY rmsk exon 25241492 25249734 45784 - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0230"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "28"; repStart "0"; chrY rmsk exon 25249736 25249799 348 - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0230"; repClass "LTR"; repEnd "64"; repFamily "ERV1"; repLeft "1"; repStart "-8372"; chrY rmsk exon 25249800 25250946 7471 - . gene_id "HERV9_Yq11.23b"; transcript_id "HERV9_Yq11.23b"; locus "HERV9_Yq11.23b"; repName "LTR12D"; geneRegion "ltr"; locid "HERV9-int_0230"; repClass "LTR"; repEnd "1254"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HML2_Yq11.23b ### chrY rmsk gene 25415255 25418454 . + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0131"; model_cov "3385"; model_pct "44.9"; chrY rmsk exon 25415255 25418454 11433 + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0131"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "-1343"; repStart "2808"; ### HML6_Yq11.23e ### chrY rmsk gene 25533930 25538533 . + . gene_id "HML6_Yq11.23e"; transcript_id "HML6_Yq11.23e"; locus "HML6_Yq11.23e"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0120"; model_cov "4328"; model_pct "60.1"; chrY rmsk exon 25533930 25538099 15304 + . gene_id "HML6_Yq11.23e"; transcript_id "HML6_Yq11.23e"; locus "HML6_Yq11.23e"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0120"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "2872"; chrY rmsk exon 25538102 25538533 1980 + . gene_id "HML6_Yq11.23e"; transcript_id "HML6_Yq11.23e"; locus "HML6_Yq11.23e"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0120"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_Yq11.23f ### chrY rmsk gene 25548623 25553226 . - . gene_id "HML6_Yq11.23f"; transcript_id "HML6_Yq11.23f"; locus "HML6_Yq11.23f"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0121"; model_cov "4328"; model_pct "60.1"; chrY rmsk exon 25548623 25549054 1980 - . gene_id "HML6_Yq11.23f"; transcript_id "HML6_Yq11.23f"; locus "HML6_Yq11.23f"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0121"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 25549057 25553226 15313 - . gene_id "HML6_Yq11.23f"; transcript_id "HML6_Yq11.23f"; locus "HML6_Yq11.23f"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0121"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "2872"; repStart "-2"; ### HERVL_Yq11.23d ### chrY rmsk gene 25572065 25577303 . - . gene_id "HERVL_Yq11.23d"; transcript_id "HERVL_Yq11.23d"; locus "HERVL_Yq11.23d"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1452"; model_cov "4930"; model_pct "87.2"; chrY rmsk exon 25572065 25572256 809 - . gene_id "HERVL_Yq11.23d"; transcript_id "HERVL_Yq11.23d"; locus "HERVL_Yq11.23d"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1452"; repClass "LTR"; repEnd "203"; repFamily "ERVL"; repLeft "1"; repStart "-241"; chrY rmsk exon 25572257 25572665 2144 - . gene_id "HERVL_Yq11.23d"; transcript_id "HERVL_Yq11.23d"; locus "HERVL_Yq11.23d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1452"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5235"; repStart "0"; chrY rmsk exon 25572939 25577303 18558 - . gene_id "HERVL_Yq11.23d"; transcript_id "HERVL_Yq11.23d"; locus "HERVL_Yq11.23d"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1452"; repClass "LTR"; repEnd "5225"; repFamily "ERVL"; repLeft "714"; repStart "-429"; ### HERVL_Yq11.23e ### chrY rmsk gene 25595473 25600179 . + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1453"; model_cov "4214"; model_pct "74.5"; chrY rmsk exon 25595473 25595625 805 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "153"; repFamily "ERVL"; repLeft "-291"; repStart "1"; chrY rmsk exon 25595627 25597408 9406 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "3200"; repFamily "ERVL"; repLeft "-2454"; repStart "1378"; chrY rmsk exon 25597407 25597560 905 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-998"; repStart "4503"; chrY rmsk exon 25597549 25597937 2254 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "3596"; repFamily "ERVL"; repLeft "-2058"; repStart "3201"; chrY rmsk exon 25597932 25599802 11009 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3810"; chrY rmsk exon 25599803 25600179 1486 + . gene_id "HERVL_Yq11.23e"; transcript_id "HERVL_Yq11.23e"; locus "HERVL_Yq11.23e"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1453"; repClass "LTR"; repEnd "403"; repFamily "ERVL"; repLeft "-41"; repStart "1"; ### LTR25_Yq11.23i ### chrY rmsk gene 25626460 25630223 . + . gene_id "LTR25_Yq11.23i"; transcript_id "LTR25_Yq11.23i"; locus "LTR25_Yq11.23i"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0232"; model_cov "2722"; model_pct "37.9"; chrY rmsk exon 25626460 25627062 1256 + . gene_id "LTR25_Yq11.23i"; transcript_id "LTR25_Yq11.23i"; locus "LTR25_Yq11.23i"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0232"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "120"; chrY rmsk exon 25627461 25630223 8014 + . gene_id "LTR25_Yq11.23i"; transcript_id "LTR25_Yq11.23i"; locus "LTR25_Yq11.23i"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0232"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-4399"; repStart "67"; ### LTR25_Yq11.23j ### chrY rmsk gene 25630227 25640411 . - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0233"; model_cov "8918"; model_pct "100.0"; chrY rmsk exon 25630227 25631061 2762 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "10"; repStart "0"; chrY rmsk exon 25631071 25634033 10142 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "1290"; repStart "0"; chrY rmsk exon 25634321 25635459 5604 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "3260"; repFamily "ERV1"; repLeft "3188"; repStart "-3928"; chrY rmsk exon 25635499 25635531 3861 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "1485"; repFamily "ERV1"; repLeft "1444"; repStart "-5703"; chrY rmsk exon 25635532 25636424 3029 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 25636425 25636491 3861 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "1459"; repFamily "ERV1"; repLeft "1390"; repStart "-5729"; chrY rmsk exon 25636535 25639426 8508 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "1389"; repFamily "ERV1"; repLeft "-1449"; repStart "-5799"; chrY rmsk exon 25639560 25640411 3243 - . gene_id "LTR25_Yq11.23j"; transcript_id "LTR25_Yq11.23j"; locus "LTR25_Yq11.23j"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0233"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "12"; repStart "0"; ### HUERSP3_Yq11.23d ### chrY rmsk gene 25640424 25641358 . + . gene_id "HUERSP3_Yq11.23d"; transcript_id "HUERSP3_Yq11.23d"; locus "HUERSP3_Yq11.23d"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0267"; model_cov "924"; model_pct "10.4"; chrY rmsk exon 25640424 25641358 3252 + . gene_id "HUERSP3_Yq11.23d"; transcript_id "HUERSP3_Yq11.23d"; locus "HUERSP3_Yq11.23d"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0267"; repClass "LTR"; repEnd "3614"; repFamily "ERV1"; repLeft "-5305"; repStart "2690"; ### LTR25_Yq11.23k ### chrY rmsk gene 25641364 25644034 . + . gene_id "LTR25_Yq11.23k"; transcript_id "LTR25_Yq11.23k"; locus "LTR25_Yq11.23k"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0234"; model_cov "930"; model_pct "12.9"; chrY rmsk exon 25641364 25641443 3095 + . gene_id "LTR25_Yq11.23k"; transcript_id "LTR25_Yq11.23k"; locus "LTR25_Yq11.23k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0234"; repClass "LTR"; repEnd "6314"; repFamily "ERV1"; repLeft "-874"; repStart "6235"; chrY rmsk exon 25642446 25643294 3095 + . gene_id "LTR25_Yq11.23k"; transcript_id "LTR25_Yq11.23k"; locus "LTR25_Yq11.23k"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0234"; repClass "LTR"; repEnd "7166"; repFamily "ERV1"; repLeft "-22"; repStart "6315"; chrY rmsk exon 25643416 25643487 297 + . gene_id "LTR25_Yq11.23k"; transcript_id "LTR25_Yq11.23k"; locus "LTR25_Yq11.23k"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0234"; repClass "LTR"; repEnd "291"; repFamily "ERV1"; repLeft "-553"; repStart "220"; chrY rmsk exon 25643539 25644034 1201 + . gene_id "LTR25_Yq11.23k"; transcript_id "LTR25_Yq11.23k"; locus "LTR25_Yq11.23k"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0234"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "273"; ### HUERSP3_Yq11.23e ### chrY rmsk gene 25644036 25645370 . - . gene_id "HUERSP3_Yq11.23e"; transcript_id "HUERSP3_Yq11.23e"; locus "HUERSP3_Yq11.23e"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0268"; model_cov "1358"; model_pct "15.2"; chrY rmsk exon 25644036 25645370 3486 - . gene_id "HUERSP3_Yq11.23e"; transcript_id "HUERSP3_Yq11.23e"; locus "HUERSP3_Yq11.23e"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0268"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "1695"; repStart "-5866"; ### LTR25_Yq11.23l ### chrY rmsk gene 25647156 25648514 . + . gene_id "LTR25_Yq11.23l"; transcript_id "LTR25_Yq11.23l"; locus "LTR25_Yq11.23l"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0236"; model_cov "1337"; model_pct "18.6"; chrY rmsk exon 25647156 25647890 2628 + . gene_id "LTR25_Yq11.23l"; transcript_id "LTR25_Yq11.23l"; locus "LTR25_Yq11.23l"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0236"; repClass "LTR"; repEnd "764"; repFamily "ERV1"; repLeft "-6424"; repStart "24"; chrY rmsk exon 25647910 25648514 1926 + . gene_id "LTR25_Yq11.23l"; transcript_id "LTR25_Yq11.23l"; locus "LTR25_Yq11.23l"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0236"; repClass "LTR"; repEnd "1432"; repFamily "ERV1"; repLeft "-5756"; repStart "835"; ### HML6_Yq11.23g ### chrY rmsk gene 25649349 25654036 . + . gene_id "HML6_Yq11.23g"; transcript_id "HML6_Yq11.23g"; locus "HML6_Yq11.23g"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0122"; model_cov "4325"; model_pct "60.1"; chrY rmsk exon 25649349 25653303 17138 + . gene_id "HML6_Yq11.23g"; transcript_id "HML6_Yq11.23g"; locus "HML6_Yq11.23g"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0122"; repClass "LTR"; repEnd "6928"; repFamily "ERVK"; repLeft "-274"; repStart "2872"; chrY rmsk exon 25653348 25653609 17138 + . gene_id "HML6_Yq11.23g"; transcript_id "HML6_Yq11.23g"; locus "HML6_Yq11.23g"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0122"; repClass "LTR"; repEnd "7198"; repFamily "ERVK"; repLeft "-4"; repStart "6929"; chrY rmsk exon 25653611 25654036 2037 + . gene_id "HML6_Yq11.23g"; transcript_id "HML6_Yq11.23g"; locus "HML6_Yq11.23g"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0122"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "1"; ### HERVL_Yq11.23f ### chrY rmsk gene 25796510 25800685 . + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1454"; model_cov "3453"; model_pct "61.1"; chrY rmsk exon 25796510 25796926 1948 + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1454"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chrY rmsk exon 25796927 25797823 16831 + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1454"; repClass "LTR"; repEnd "932"; repFamily "ERVL"; repLeft "-4722"; repStart "1"; chrY rmsk exon 25797866 25800037 16831 + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1454"; repClass "LTR"; repEnd "3140"; repFamily "ERVL"; repLeft "-2514"; repStart "933"; chrY rmsk exon 25800046 25800355 1606 + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1454"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5339"; chrY rmsk exon 25800357 25800685 1562 + . gene_id "HERVL_Yq11.23f"; transcript_id "HERVL_Yq11.23f"; locus "HERVL_Yq11.23f"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1454"; repClass "LTR"; repEnd "346"; repFamily "ERVL"; repLeft "-98"; repStart "3"; ### LTR25_Yq11.23m ### chrY rmsk gene 25816410 25817147 . - . gene_id "LTR25_Yq11.23m"; transcript_id "LTR25_Yq11.23m"; locus "LTR25_Yq11.23m"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0238"; model_cov "719"; model_pct "10.0"; chrY rmsk exon 25816410 25817147 2027 - . gene_id "LTR25_Yq11.23m"; transcript_id "LTR25_Yq11.23m"; locus "LTR25_Yq11.23m"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0238"; repClass "LTR"; repEnd "2565"; repFamily "ERV1"; repLeft "1846"; repStart "-4623"; ### LTR25_Yq11.23n ### chrY rmsk gene 25817191 25820588 . + . gene_id "LTR25_Yq11.23n"; transcript_id "LTR25_Yq11.23n"; locus "LTR25_Yq11.23n"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0239"; model_cov "2370"; model_pct "33.0"; chrY rmsk exon 25817191 25817887 1247 + . gene_id "LTR25_Yq11.23n"; transcript_id "LTR25_Yq11.23n"; locus "LTR25_Yq11.23n"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0239"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "101"; chrY rmsk exon 25818246 25820588 7502 + . gene_id "LTR25_Yq11.23n"; transcript_id "LTR25_Yq11.23n"; locus "LTR25_Yq11.23n"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0239"; repClass "LTR"; repEnd "2415"; repFamily "ERV1"; repLeft "-4773"; repStart "45"; ### LTR25_Yq11.23o ### chrY rmsk gene 25821483 25831428 . - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; category "unknown"; intModel "LTR25-int"; locid "LTR25-int_0241"; model_cov "7774"; model_pct "100.0"; chrY rmsk exon 25821483 25822320 3145 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "10"; repStart "0"; chrY rmsk exon 25822330 25825284 9334 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "1295"; repStart "0"; chrY rmsk exon 25825607 25826684 5458 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "3265"; repFamily "ERV1"; repLeft "3012"; repStart "-3923"; chrY rmsk exon 25826784 25827677 2965 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 25829064 25830641 5565 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "1881"; repFamily "ERV1"; repLeft "253"; repStart "-5307"; chrY rmsk exon 25830719 25831132 1315 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "844"; repFamily "ERV1"; repLeft "475"; repStart "0"; chrY rmsk exon 25831105 25831428 1222 - . gene_id "LTR25_Yq11.23o"; transcript_id "LTR25_Yq11.23o"; locus "LTR25_Yq11.23o"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0241"; repClass "LTR"; repEnd "354"; repFamily "ERV1"; repLeft "12"; repStart "-490"; ### HUERSP3_Yq11.23f ### chrY rmsk gene 25826757 25829072 . - . gene_id "HUERSP3_Yq11.23f"; transcript_id "HUERSP3_Yq11.23f"; locus "HUERSP3_Yq11.23f"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0269"; model_cov "1450"; model_pct "16.3"; chrY rmsk exon 25826757 25826783 3356 - . gene_id "HUERSP3_Yq11.23f"; transcript_id "HUERSP3_Yq11.23f"; locus "HUERSP3_Yq11.23f"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0269"; repClass "LTR"; repEnd "3216"; repFamily "ERV1"; repLeft "3191"; repStart "-5703"; chrY rmsk exon 25827678 25829072 3356 - . gene_id "HUERSP3_Yq11.23f"; transcript_id "HUERSP3_Yq11.23f"; locus "HUERSP3_Yq11.23f"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0269"; repClass "LTR"; repEnd "3190"; repFamily "ERV1"; repLeft "1765"; repStart "-5729"; ### LTR25_Yq11.23p ### chrY rmsk gene 25831440 25834100 . + . gene_id "LTR25_Yq11.23p"; transcript_id "LTR25_Yq11.23p"; locus "LTR25_Yq11.23p"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0242"; model_cov "1855"; model_pct "25.8"; chrY rmsk exon 25831440 25832372 3034 + . gene_id "LTR25_Yq11.23p"; transcript_id "LTR25_Yq11.23p"; locus "LTR25_Yq11.23p"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0242"; repClass "LTR"; repEnd "1883"; repFamily "ERV1"; repLeft "-5305"; repStart "958"; chrY rmsk exon 25832378 25833305 3020 + . gene_id "LTR25_Yq11.23p"; transcript_id "LTR25_Yq11.23p"; locus "LTR25_Yq11.23p"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0242"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "-23"; repStart "6235"; chrY rmsk exon 25833547 25834100 998 + . gene_id "LTR25_Yq11.23p"; transcript_id "LTR25_Yq11.23p"; locus "LTR25_Yq11.23p"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0242"; repClass "LTR"; repEnd "842"; repFamily "ERV1"; repLeft "-2"; repStart "268"; ### HUERSP3_Yq11.23g ### chrY rmsk gene 25834105 25835440 . - . gene_id "HUERSP3_Yq11.23g"; transcript_id "HUERSP3_Yq11.23g"; locus "HUERSP3_Yq11.23g"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0270"; model_cov "1358"; model_pct "15.2"; chrY rmsk exon 25834105 25835440 3147 - . gene_id "HUERSP3_Yq11.23g"; transcript_id "HUERSP3_Yq11.23g"; locus "HUERSP3_Yq11.23g"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0270"; repClass "LTR"; repEnd "3053"; repFamily "ERV1"; repLeft "1695"; repStart "-5866"; ### HERVS71_Yq11.23b ### chrY rmsk gene 25836516 25845674 . - . gene_id "HERVS71_Yq11.23b"; transcript_id "HERVS71_Yq11.23b"; locus "HERVS71_Yq11.23b"; category "oneside"; intModel "HERVS71-int"; locid "HERVS71-int_0062"; model_cov "8578"; model_pct "95.5"; chrY rmsk exon 25836516 25837079 3459 - . gene_id "HERVS71_Yq11.23b"; transcript_id "HERVS71_Yq11.23b"; locus "HERVS71_Yq11.23b"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0062"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 25837080 25845479 40047 - . gene_id "HERVS71_Yq11.23b"; transcript_id "HERVS71_Yq11.23b"; locus "HERVS71_Yq11.23b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0062"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "475"; repStart "-69"; chrY rmsk exon 25845506 25845674 40047 - . gene_id "HERVS71_Yq11.23b"; transcript_id "HERVS71_Yq11.23b"; locus "HERVS71_Yq11.23b"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0062"; repClass "LTR"; repEnd "474"; repFamily "ERV1"; repLeft "330"; repStart "-8504"; ### HML6_Yq11.23h ### chrY rmsk gene 25846607 25851293 . + . gene_id "HML6_Yq11.23h"; transcript_id "HML6_Yq11.23h"; locus "HML6_Yq11.23h"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0123"; model_cov "4247"; model_pct "59.0"; chrY rmsk exon 25846607 25849121 11497 + . gene_id "HML6_Yq11.23h"; transcript_id "HML6_Yq11.23h"; locus "HML6_Yq11.23h"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0123"; repClass "LTR"; repEnd "5442"; repFamily "ERVK"; repLeft "-1760"; repStart "2871"; chrY rmsk exon 25849199 25850868 6707 + . gene_id "HML6_Yq11.23h"; transcript_id "HML6_Yq11.23h"; locus "HML6_Yq11.23h"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0123"; repClass "LTR"; repEnd "7196"; repFamily "ERVK"; repLeft "-6"; repStart "5520"; chrY rmsk exon 25850875 25851293 1760 + . gene_id "HML6_Yq11.23h"; transcript_id "HML6_Yq11.23h"; locus "HML6_Yq11.23h"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0123"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "-5"; repStart "1"; ### HERVK11_Yq11.23c ### chrY rmsk gene 25947032 25949624 . - . gene_id "HERVK11_Yq11.23c"; transcript_id "HERVK11_Yq11.23c"; locus "HERVK11_Yq11.23c"; category "oneside"; intModel "HERVK11-int"; locid "HERVK11-int_0122"; model_cov "1645"; model_pct "20.7"; chrY rmsk exon 25947032 25948114 6894 - . gene_id "HERVK11_Yq11.23c"; transcript_id "HERVK11_Yq11.23c"; locus "HERVK11_Yq11.23c"; repName "MER11C"; geneRegion "ltr"; locid "HERVK11-int_0122"; repClass "LTR"; repEnd "1071"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 25948115 25948996 5834 - . gene_id "HERVK11_Yq11.23c"; transcript_id "HERVK11_Yq11.23c"; locus "HERVK11_Yq11.23c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0122"; repClass "LTR"; repEnd "7953"; repFamily "ERVK"; repLeft "6957"; repStart "0"; chrY rmsk exon 25948984 25949624 4673 - . gene_id "HERVK11_Yq11.23c"; transcript_id "HERVK11_Yq11.23c"; locus "HERVK11_Yq11.23c"; repName "HERVK11-int"; geneRegion "internal"; locid "HERVK11-int_0122"; repClass "LTR"; repEnd "6765"; repFamily "ERVK"; repLeft "6116"; repStart "-1188"; ### HML3_Yq11.23a ### chrY rmsk gene 26025021 26028320 . - . gene_id "HML3_Yq11.23a"; transcript_id "HML3_Yq11.23a"; locus "HML3_Yq11.23a"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0274"; model_cov "2857"; model_pct "47.5"; chrY rmsk exon 26025021 26025499 2925 - . gene_id "HML3_Yq11.23a"; transcript_id "HML3_Yq11.23a"; locus "HML3_Yq11.23a"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0274"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 26025500 26026271 5203 - . gene_id "HML3_Yq11.23a"; transcript_id "HML3_Yq11.23a"; locus "HML3_Yq11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0274"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "5246"; repStart "0"; chrY rmsk exon 26026288 26027659 9535 - . gene_id "HML3_Yq11.23a"; transcript_id "HML3_Yq11.23a"; locus "HML3_Yq11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0274"; repClass "LTR"; repEnd "5165"; repFamily "ERVK"; repLeft "3785"; repStart "-856"; chrY rmsk exon 26027651 26028320 8732 - . gene_id "HML3_Yq11.23a"; transcript_id "HML3_Yq11.23a"; locus "HML3_Yq11.23a"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0274"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "807"; repStart "-4512"; ### HML3_Yq11.23b ### chrY rmsk gene 26028381 26029633 . - . gene_id "HML3_Yq11.23b"; transcript_id "HML3_Yq11.23b"; locus "HML3_Yq11.23b"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0275"; model_cov "805"; model_pct "13.4"; chrY rmsk exon 26028381 26029146 8732 - . gene_id "HML3_Yq11.23b"; transcript_id "HML3_Yq11.23b"; locus "HML3_Yq11.23b"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0275"; repClass "LTR"; repEnd "1509"; repFamily "ERVK"; repLeft "704"; repStart "-4512"; chrY rmsk exon 26029147 26029203 2530 - . gene_id "HML3_Yq11.23b"; transcript_id "HML3_Yq11.23b"; locus "HML3_Yq11.23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0275"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "444"; repStart "0"; chrY rmsk exon 26029229 26029633 2530 - . gene_id "HML3_Yq11.23b"; transcript_id "HML3_Yq11.23b"; locus "HML3_Yq11.23b"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0275"; repClass "LTR"; repEnd "443"; repFamily "ERVK"; repLeft "2"; repStart "-69"; ### HERV3_Yq11.23a ### chrY rmsk gene 26039260 26048091 . - . gene_id "HERV3_Yq11.23a"; transcript_id "HERV3_Yq11.23a"; locus "HERV3_Yq11.23a"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0100"; model_cov "8211"; model_pct "97.4"; chrY rmsk exon 26039260 26039820 2630 - . gene_id "HERV3_Yq11.23a"; transcript_id "HERV3_Yq11.23a"; locus "HERV3_Yq11.23a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0100"; repClass "LTR"; repEnd "594"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chrY rmsk exon 26039821 26042592 16295 - . gene_id "HERV3_Yq11.23a"; transcript_id "HERV3_Yq11.23a"; locus "HERV3_Yq11.23a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0100"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "5616"; repStart "0"; chrY rmsk exon 26042595 26047965 31852 - . gene_id "HERV3_Yq11.23a"; transcript_id "HERV3_Yq11.23a"; locus "HERV3_Yq11.23a"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0100"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "1"; repStart "-3024"; chrY rmsk exon 26047967 26048091 699 - . gene_id "HERV3_Yq11.23a"; transcript_id "HERV3_Yq11.23a"; locus "HERV3_Yq11.23a"; repName "LTR4"; geneRegion "ltr"; locid "HERV3-int_0100"; repClass "LTR"; repEnd "596"; repFamily "ERV1"; repLeft "472"; repStart "0"; ### HERV3_Yq11.23b ### chrY rmsk gene 26076781 26082284 . - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0101"; model_cov "4603"; model_pct "54.6"; chrY rmsk exon 26076781 26077282 1889 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "55"; repStart "0"; chrY rmsk exon 26077310 26077437 491 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "8409"; repFamily "ERV1"; repLeft "8283"; repStart "-17"; chrY rmsk exon 26077522 26079072 6263 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "4760"; repFamily "ERV1"; repLeft "3182"; repStart "-3666"; chrY rmsk exon 26079130 26080199 3032 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "2886"; repFamily "ERV1"; repLeft "1611"; repStart "-5540"; chrY rmsk exon 26080198 26081382 4506 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "1658"; repFamily "ERV1"; repLeft "454"; repStart "-6768"; chrY rmsk exon 26081477 26081903 1639 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "50"; repFamily "ERV1"; repLeft "-370"; repStart "-8376"; chrY rmsk exon 26081908 26082284 1316 - . gene_id "HERV3_Yq11.23b"; transcript_id "HERV3_Yq11.23b"; locus "HERV3_Yq11.23b"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0101"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "204"; repStart "0"; ### HML3_Yq11.23c ### chrY rmsk gene 26091303 26093178 . + . gene_id "HML3_Yq11.23c"; transcript_id "HML3_Yq11.23c"; locus "HML3_Yq11.23c"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0276"; model_cov "1354"; model_pct "22.5"; chrY rmsk exon 26091303 26091743 3716 + . gene_id "HML3_Yq11.23c"; transcript_id "HML3_Yq11.23c"; locus "HML3_Yq11.23c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0276"; repClass "LTR"; repEnd "455"; repFamily "ERVK"; repLeft "-58"; repStart "1"; chrY rmsk exon 26091788 26091845 3716 + . gene_id "HML3_Yq11.23c"; transcript_id "HML3_Yq11.23c"; locus "HML3_Yq11.23c"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0276"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "-1"; repStart "456"; chrY rmsk exon 26091846 26092423 3848 + . gene_id "HML3_Yq11.23c"; transcript_id "HML3_Yq11.23c"; locus "HML3_Yq11.23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0276"; repClass "LTR"; repEnd "604"; repFamily "ERVK"; repLeft "-5417"; repStart "1"; chrY rmsk exon 26092424 26093178 5538 + . gene_id "HML3_Yq11.23c"; transcript_id "HML3_Yq11.23c"; locus "HML3_Yq11.23c"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0276"; repClass "LTR"; repEnd "2031"; repFamily "ERVK"; repLeft "-3990"; repStart "1280"; ### HML5_Yq11.23c ### chrY rmsk gene 26177316 26186828 . + . gene_id "HML5_Yq11.23c"; transcript_id "HML5_Yq11.23c"; locus "HML5_Yq11.23c"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0174"; model_cov "6792"; model_pct "99.3"; chrY rmsk exon 26177316 26179550 13575 + . gene_id "HML5_Yq11.23c"; transcript_id "HML5_Yq11.23c"; locus "HML5_Yq11.23c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0174"; repClass "LTR"; repEnd "2271"; repFamily "ERVK"; repLeft "-4566"; repStart "46"; chrY rmsk exon 26180191 26182745 23819 + . gene_id "HML5_Yq11.23c"; transcript_id "HML5_Yq11.23c"; locus "HML5_Yq11.23c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0174"; repClass "LTR"; repEnd "4773"; repFamily "ERVK"; repLeft "-2064"; repStart "2267"; chrY rmsk exon 26184298 26186259 23819 + . gene_id "HML5_Yq11.23c"; transcript_id "HML5_Yq11.23c"; locus "HML5_Yq11.23c"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0174"; repClass "LTR"; repEnd "6835"; repFamily "ERVK"; repLeft "-2"; repStart "4774"; chrY rmsk exon 26186261 26186828 4044 + . gene_id "HML5_Yq11.23c"; transcript_id "HML5_Yq11.23c"; locus "HML5_Yq11.23c"; repName "LTR22"; geneRegion "ltr"; locid "HERVK22-int_0174"; repClass "LTR"; repEnd "571"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVEA_Yq12 ### chrY rmsk gene 57155464 57163960 . - . gene_id "HERVEA_Yq12"; transcript_id "HERVEA_Yq12"; locus "HERVEA_Yq12"; category "prototype"; intModel "HERVE_a-int"; locid "HERVE_a-int_0126"; model_cov "7846"; model_pct "100.0"; chrY rmsk exon 57155464 57155924 3804 - . gene_id "HERVEA_Yq12"; transcript_id "HERVEA_Yq12"; locus "HERVEA_Yq12"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 57155925 57163728 66294 - . gene_id "HERVEA_Yq12"; transcript_id "HERVEA_Yq12"; locus "HERVEA_Yq12"; repName "HERVE_a-int"; geneRegion "internal"; locid "HERVE_a-int_0126"; repClass "LTR"; repEnd "7847"; repFamily "ERV1"; repLeft "1"; repStart "0"; chrY rmsk exon 57163729 57163960 1749 - . gene_id "HERVEA_Yq12"; transcript_id "HERVEA_Yq12"; locus "HERVEA_Yq12"; repName "LTR2"; geneRegion "ltr"; locid "HERVE_a-int_0126"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "231"; repStart "0"; ### ERVLE_1_KI270760v1_alt ### chr1_KI270760v1_alt rmsk gene 28449 31224 . - . gene_id "ERVLE_1_KI270760v1_alt"; transcript_id "ERVLE_1_KI270760v1_alt"; locus "ERVLE_1_KI270760v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3791"; model_cov "2878"; model_pct "50.8"; chr1_KI270760v1_alt rmsk exon 28449 31038 7688 - . gene_id "ERVLE_1_KI270760v1_alt"; transcript_id "ERVLE_1_KI270760v1_alt"; locus "ERVLE_1_KI270760v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3791"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "2980"; repStart "0"; chr1_KI270760v1_alt rmsk exon 31037 31224 699 - . gene_id "ERVLE_1_KI270760v1_alt"; transcript_id "ERVLE_1_KI270760v1_alt"; locus "ERVLE_1_KI270760v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3791"; repClass "LTR"; repEnd "2793"; repFamily "ERVL"; repLeft "2602"; repStart "-2874"; ### MER4B_1_KI270761v1_alt ### chr1_KI270761v1_alt rmsk gene 69946 71846 . - . gene_id "MER4B_1_KI270761v1_alt"; transcript_id "MER4B_1_KI270761v1_alt"; locus "MER4B_1_KI270761v1_alt"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0577"; model_cov "918"; model_pct "13.6"; chr1_KI270761v1_alt rmsk exon 69946 70836 4383 - . gene_id "MER4B_1_KI270761v1_alt"; transcript_id "MER4B_1_KI270761v1_alt"; locus "MER4B_1_KI270761v1_alt"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0577"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1_KI270761v1_alt rmsk exon 70840 71682 2727 - . gene_id "MER4B_1_KI270761v1_alt"; transcript_id "MER4B_1_KI270761v1_alt"; locus "MER4B_1_KI270761v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0577"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5940"; repStart "0"; chr1_KI270761v1_alt rmsk exon 71745 71846 388 - . gene_id "MER4B_1_KI270761v1_alt"; transcript_id "MER4B_1_KI270761v1_alt"; locus "MER4B_1_KI270761v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0577"; repClass "LTR"; repEnd "5318"; repFamily "ERV1"; repLeft "5218"; repStart "-1440"; ### MER101_1_KI270761v1_alt ### chr1_KI270761v1_alt rmsk gene 73142 75914 . - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; category "internal"; intModel "MER101-int"; locid "MER101-int_0450"; model_cov "1611"; model_pct "24.3"; chr1_KI270761v1_alt rmsk exon 73142 73660 2430 - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0450"; repClass "LTR"; repEnd "3525"; repFamily "ERV1"; repLeft "2963"; repStart "-3114"; chr1_KI270761v1_alt rmsk exon 74265 74510 2430 - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0450"; repClass "LTR"; repEnd "2962"; repFamily "ERV1"; repLeft "2726"; repStart "-3677"; chr1_KI270761v1_alt rmsk exon 74820 74947 2430 - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0450"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "2619"; repStart "-3914"; chr1_KI270761v1_alt rmsk exon 75088 75178 2430 - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0450"; repClass "LTR"; repEnd "2618"; repFamily "ERV1"; repLeft "2521"; repStart "-4021"; chr1_KI270761v1_alt rmsk exon 75596 75914 2430 - . gene_id "MER101_1_KI270761v1_alt"; transcript_id "MER101_1_KI270761v1_alt"; locus "MER101_1_KI270761v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0450"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "1910"; repStart "-4119"; ### HML6_1_KI270761v1_alt ### chr1_KI270761v1_alt rmsk gene 85715 88503 . + . gene_id "HML6_1_KI270761v1_alt"; transcript_id "HML6_1_KI270761v1_alt"; locus "HML6_1_KI270761v1_alt"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0124"; model_cov "1165"; model_pct "16.2"; chr1_KI270761v1_alt rmsk exon 85715 86165 2606 + . gene_id "HML6_1_KI270761v1_alt"; transcript_id "HML6_1_KI270761v1_alt"; locus "HML6_1_KI270761v1_alt"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0124"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "-49"; repStart "1"; chr1_KI270761v1_alt rmsk exon 86373 86572 589 + . gene_id "HML6_1_KI270761v1_alt"; transcript_id "HML6_1_KI270761v1_alt"; locus "HML6_1_KI270761v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0124"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr1_KI270761v1_alt rmsk exon 86707 87970 2771 + . gene_id "HML6_1_KI270761v1_alt"; transcript_id "HML6_1_KI270761v1_alt"; locus "HML6_1_KI270761v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0124"; repClass "LTR"; repEnd "2228"; repFamily "ERVK"; repLeft "-4974"; repStart "1280"; chr1_KI270761v1_alt rmsk exon 88040 88503 1635 + . gene_id "HML6_1_KI270761v1_alt"; transcript_id "HML6_1_KI270761v1_alt"; locus "HML6_1_KI270761v1_alt"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0124"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### HERVL_1_KI270762v1_alt ### chr1_KI270762v1_alt rmsk gene 176482 177478 . + . gene_id "HERVL_1_KI270762v1_alt"; transcript_id "HERVL_1_KI270762v1_alt"; locus "HERVL_1_KI270762v1_alt"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1456"; model_cov "989"; model_pct "17.5"; chr1_KI270762v1_alt rmsk exon 176482 177478 7142 + . gene_id "HERVL_1_KI270762v1_alt"; transcript_id "HERVL_1_KI270762v1_alt"; locus "HERVL_1_KI270762v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1456"; repClass "LTR"; repEnd "3969"; repFamily "ERVL"; repLeft "-1685"; repStart "2980"; ### ERVLE_1_KI270762v1_alt ### chr1_KI270762v1_alt rmsk gene 188556 189286 . + . gene_id "ERVLE_1_KI270762v1_alt"; transcript_id "ERVLE_1_KI270762v1_alt"; locus "ERVLE_1_KI270762v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3792"; model_cov "842"; model_pct "14.9"; chr1_KI270762v1_alt rmsk exon 188556 189286 682 + . gene_id "ERVLE_1_KI270762v1_alt"; transcript_id "ERVLE_1_KI270762v1_alt"; locus "ERVLE_1_KI270762v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3792"; repClass "LTR"; repEnd "1181"; repFamily "ERVL"; repLeft "-4486"; repStart "339"; ### MER4B_1_KI270763v1_alt ### chr1_KI270763v1_alt rmsk gene 637559 638764 . + . gene_id "MER4B_1_KI270763v1_alt"; transcript_id "MER4B_1_KI270763v1_alt"; locus "MER4B_1_KI270763v1_alt"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0578"; model_cov "1214"; model_pct "18.0"; chr1_KI270763v1_alt rmsk exon 637559 638764 2879 + . gene_id "MER4B_1_KI270763v1_alt"; transcript_id "MER4B_1_KI270763v1_alt"; locus "MER4B_1_KI270763v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0578"; repClass "LTR"; repEnd "4531"; repFamily "ERV1"; repLeft "-2227"; repStart "3317"; ### PRIMA4_1_KI270765v1_alt ### chr1_KI270765v1_alt rmsk gene 39869 41869 . - . gene_id "PRIMA4_1_KI270765v1_alt"; transcript_id "PRIMA4_1_KI270765v1_alt"; locus "PRIMA4_1_KI270765v1_alt"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0264"; model_cov "1547"; model_pct "18.7"; chr1_KI270765v1_alt rmsk exon 39869 40083 3289 - . gene_id "PRIMA4_1_KI270765v1_alt"; transcript_id "PRIMA4_1_KI270765v1_alt"; locus "PRIMA4_1_KI270765v1_alt"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0264"; repClass "LTR"; repEnd "6387"; repFamily "ERV1"; repLeft "6167"; repStart "-1883"; chr1_KI270765v1_alt rmsk exon 40233 41245 3289 - . gene_id "PRIMA4_1_KI270765v1_alt"; transcript_id "PRIMA4_1_KI270765v1_alt"; locus "PRIMA4_1_KI270765v1_alt"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0264"; repClass "LTR"; repEnd "6166"; repFamily "ERV1"; repLeft "5160"; repStart "-2104"; chr1_KI270765v1_alt rmsk exon 41541 41869 3289 - . gene_id "PRIMA4_1_KI270765v1_alt"; transcript_id "PRIMA4_1_KI270765v1_alt"; locus "PRIMA4_1_KI270765v1_alt"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0264"; repClass "LTR"; repEnd "5159"; repFamily "ERV1"; repLeft "4838"; repStart "-3111"; ### ERVLE_1_KI270765v1_alt ### chr1_KI270765v1_alt rmsk gene 102063 105374 . + . gene_id "ERVLE_1_KI270765v1_alt"; transcript_id "ERVLE_1_KI270765v1_alt"; locus "ERVLE_1_KI270765v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3794"; model_cov "1394"; model_pct "24.6"; chr1_KI270765v1_alt rmsk exon 102063 102166 1556 + . gene_id "ERVLE_1_KI270765v1_alt"; transcript_id "ERVLE_1_KI270765v1_alt"; locus "ERVLE_1_KI270765v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3794"; repClass "LTR"; repEnd "3818"; repFamily "ERVL"; repLeft "-1849"; repStart "3698"; chr1_KI270765v1_alt rmsk exon 102478 103552 1556 + . gene_id "ERVLE_1_KI270765v1_alt"; transcript_id "ERVLE_1_KI270765v1_alt"; locus "ERVLE_1_KI270765v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3794"; repClass "LTR"; repEnd "4929"; repFamily "ERVL"; repLeft "-738"; repStart "3729"; chr1_KI270765v1_alt rmsk exon 105281 105374 353 + . gene_id "ERVLE_1_KI270765v1_alt"; transcript_id "ERVLE_1_KI270765v1_alt"; locus "ERVLE_1_KI270765v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3794"; repClass "LTR"; repEnd "5195"; repFamily "ERVL"; repLeft "-472"; repStart "5121"; ### HERV3_1_KI270766v1_alt(a) ### chr1_KI270766v1_alt rmsk gene 30242 35465 . + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0102"; model_cov "4280"; model_pct "50.8"; chr1_KI270766v1_alt rmsk exon 30242 30385 2514 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "-473"; repStart "1"; chr1_KI270766v1_alt rmsk exon 30415 30828 2514 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "-1"; repStart "87"; chr1_KI270766v1_alt rmsk exon 30829 31278 2063 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-8368"; repStart "-374"; chr1_KI270766v1_alt rmsk exon 31259 32531 6278 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "-6781"; repStart "319"; chr1_KI270766v1_alt rmsk exon 32642 34779 13932 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "-2564"; repStart "3701"; chr1_KI270766v1_alt rmsk exon 35082 35465 13932 + . gene_id "HERV3_1_KI270766v1_alt(a)"; transcript_id "HERV3_1_KI270766v1_alt(a)"; locus "HERV3_1_KI270766v1_alt(a)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0102"; repClass "LTR"; repEnd "6224"; repFamily "ERV1"; repLeft "-2202"; repStart "5863"; ### HERV3_1_KI270766v1_alt(b) ### chr1_KI270766v1_alt rmsk gene 82435 87659 . - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0103"; model_cov "4280"; model_pct "50.8"; chr1_KI270766v1_alt rmsk exon 82435 82818 14810 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "6224"; repFamily "ERV1"; repLeft "5863"; repStart "-2202"; chr1_KI270766v1_alt rmsk exon 83121 85258 14810 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "5862"; repFamily "ERV1"; repLeft "3701"; repStart "-2564"; chr1_KI270766v1_alt rmsk exon 85369 86642 6685 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "1645"; repFamily "ERV1"; repLeft "319"; repStart "-6781"; chr1_KI270766v1_alt rmsk exon 86623 87072 2194 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "58"; repFamily "ERV1"; repLeft "-374"; repStart "-8368"; chr1_KI270766v1_alt rmsk exon 87073 87486 2499 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "87"; repStart "-1"; chr1_KI270766v1_alt rmsk exon 87516 87659 2499 - . gene_id "HERV3_1_KI270766v1_alt(b)"; transcript_id "HERV3_1_KI270766v1_alt(b)"; locus "HERV3_1_KI270766v1_alt(b)"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0103"; repClass "LTR"; repEnd "86"; repFamily "ERV1"; repLeft "1"; repStart "-473"; ### HML2_1_KI270766v1_alt ### chr1_KI270766v1_alt rmsk gene 150436 159977 . + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0132"; model_cov "7448"; model_pct "98.8"; chr1_KI270766v1_alt rmsk exon 150436 151426 7851 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1_KI270766v1_alt rmsk exon 151428 152160 4512 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2"; chr1_KI270766v1_alt rmsk exon 152253 158890 20253 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1_KI270766v1_alt rmsk exon 158980 159977 8041 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### MER4B_1_KI270892v1_alt ### chr1_KI270892v1_alt rmsk gene 66324 68224 . - . gene_id "MER4B_1_KI270892v1_alt"; transcript_id "MER4B_1_KI270892v1_alt"; locus "MER4B_1_KI270892v1_alt"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0582"; model_cov "918"; model_pct "13.6"; chr1_KI270892v1_alt rmsk exon 66324 67214 4383 - . gene_id "MER4B_1_KI270892v1_alt"; transcript_id "MER4B_1_KI270892v1_alt"; locus "MER4B_1_KI270892v1_alt"; repName "MER4D"; geneRegion "ltr"; locid "MER4B-int_0582"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr1_KI270892v1_alt rmsk exon 67218 68060 2727 - . gene_id "MER4B_1_KI270892v1_alt"; transcript_id "MER4B_1_KI270892v1_alt"; locus "MER4B_1_KI270892v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0582"; repClass "LTR"; repEnd "6758"; repFamily "ERV1"; repLeft "5940"; repStart "0"; chr1_KI270892v1_alt rmsk exon 68123 68224 388 - . gene_id "MER4B_1_KI270892v1_alt"; transcript_id "MER4B_1_KI270892v1_alt"; locus "MER4B_1_KI270892v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0582"; repClass "LTR"; repEnd "5318"; repFamily "ERV1"; repLeft "5218"; repStart "-1440"; ### MER101_1_KI270892v1_alt ### chr1_KI270892v1_alt rmsk gene 69520 72292 . - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; category "internal"; intModel "MER101-int"; locid "MER101-int_0452"; model_cov "1611"; model_pct "24.3"; chr1_KI270892v1_alt rmsk exon 69520 70038 2430 - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0452"; repClass "LTR"; repEnd "3525"; repFamily "ERV1"; repLeft "2963"; repStart "-3114"; chr1_KI270892v1_alt rmsk exon 70643 70888 2430 - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0452"; repClass "LTR"; repEnd "2962"; repFamily "ERV1"; repLeft "2726"; repStart "-3677"; chr1_KI270892v1_alt rmsk exon 71198 71325 2430 - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0452"; repClass "LTR"; repEnd "2725"; repFamily "ERV1"; repLeft "2619"; repStart "-3914"; chr1_KI270892v1_alt rmsk exon 71466 71556 2430 - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0452"; repClass "LTR"; repEnd "2618"; repFamily "ERV1"; repLeft "2521"; repStart "-4021"; chr1_KI270892v1_alt rmsk exon 71974 72292 2430 - . gene_id "MER101_1_KI270892v1_alt"; transcript_id "MER101_1_KI270892v1_alt"; locus "MER101_1_KI270892v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0452"; repClass "LTR"; repEnd "2520"; repFamily "ERV1"; repLeft "1910"; repStart "-4119"; ### HML6_1_KI270892v1_alt ### chr1_KI270892v1_alt rmsk gene 82093 84881 . + . gene_id "HML6_1_KI270892v1_alt"; transcript_id "HML6_1_KI270892v1_alt"; locus "HML6_1_KI270892v1_alt"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0125"; model_cov "1165"; model_pct "16.2"; chr1_KI270892v1_alt rmsk exon 82093 82543 2606 + . gene_id "HML6_1_KI270892v1_alt"; transcript_id "HML6_1_KI270892v1_alt"; locus "HML6_1_KI270892v1_alt"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0125"; repClass "LTR"; repEnd "450"; repFamily "ERVK"; repLeft "-49"; repStart "1"; chr1_KI270892v1_alt rmsk exon 82751 82950 589 + . gene_id "HML6_1_KI270892v1_alt"; transcript_id "HML6_1_KI270892v1_alt"; locus "HML6_1_KI270892v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0125"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr1_KI270892v1_alt rmsk exon 83085 84348 2771 + . gene_id "HML6_1_KI270892v1_alt"; transcript_id "HML6_1_KI270892v1_alt"; locus "HML6_1_KI270892v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0125"; repClass "LTR"; repEnd "2228"; repFamily "ERVK"; repLeft "-4974"; repStart "1280"; chr1_KI270892v1_alt rmsk exon 84418 84881 1635 + . gene_id "HML6_1_KI270892v1_alt"; transcript_id "HML6_1_KI270892v1_alt"; locus "HML6_1_KI270892v1_alt"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0125"; repClass "LTR"; repEnd "499"; repFamily "ERVK"; repLeft "0"; repStart "2"; ### ERV316A3_2_GL383521v1_alt ### chr2_GL383521v1_alt rmsk gene 86107 87174 . + . gene_id "ERV316A3_2_GL383521v1_alt"; transcript_id "ERV316A3_2_GL383521v1_alt"; locus "ERV316A3_2_GL383521v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2868"; model_cov "1098"; model_pct "21.0"; chr2_GL383521v1_alt rmsk exon 86107 87174 2438 + . gene_id "ERV316A3_2_GL383521v1_alt"; transcript_id "ERV316A3_2_GL383521v1_alt"; locus "ERV316A3_2_GL383521v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2868"; repClass "LTR"; repEnd "3871"; repFamily "ERVL"; repLeft "-1355"; repStart "2773"; ### ERV316A3_2_KI270768v1_alt ### chr2_KI270768v1_alt rmsk gene 41647 42511 . - . gene_id "ERV316A3_2_KI270768v1_alt"; transcript_id "ERV316A3_2_KI270768v1_alt"; locus "ERV316A3_2_KI270768v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2869"; model_cov "547"; model_pct "10.5"; chr2_KI270768v1_alt rmsk exon 41647 41771 257 - . gene_id "ERV316A3_2_KI270768v1_alt"; transcript_id "ERV316A3_2_KI270768v1_alt"; locus "ERV316A3_2_KI270768v1_alt"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2869"; repClass "LTR"; repEnd "328"; repFamily "ERVL"; repLeft "199"; repStart "-210"; chr2_KI270768v1_alt rmsk exon 42148 42511 441 - . gene_id "ERV316A3_2_KI270768v1_alt"; transcript_id "ERV316A3_2_KI270768v1_alt"; locus "ERV316A3_2_KI270768v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2869"; repClass "LTR"; repEnd "4779"; repFamily "ERVL"; repLeft "4232"; repStart "-447"; ### HERVFRD_2_KI270770v1_alt ### chr2_KI270770v1_alt rmsk gene 102336 105480 . + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0234"; model_cov "2121"; model_pct "29.4"; chr2_KI270770v1_alt rmsk exon 102336 103083 4088 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0234"; repClass "LTR"; repEnd "4921"; repFamily "ERV1"; repLeft "-2284"; repStart "4163"; chr2_KI270770v1_alt rmsk exon 103405 104049 4289 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0234"; repClass "LTR"; repEnd "6087"; repFamily "ERV1"; repLeft "-1118"; repStart "5441"; chr2_KI270770v1_alt rmsk exon 104047 104095 275 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0234"; repClass "LTR"; repEnd "6591"; repFamily "ERV1"; repLeft "-614"; repStart "6542"; chr2_KI270770v1_alt rmsk exon 104084 104153 292 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0234"; repClass "LTR"; repEnd "6595"; repFamily "ERV1"; repLeft "-610"; repStart "6524"; chr2_KI270770v1_alt rmsk exon 104190 104800 3900 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0234"; repClass "LTR"; repEnd "7196"; repFamily "ERV1"; repLeft "-9"; repStart "6599"; chr2_KI270770v1_alt rmsk exon 104801 105480 3662 + . gene_id "HERVFRD_2_KI270770v1_alt"; transcript_id "HERVFRD_2_KI270770v1_alt"; locus "HERVFRD_2_KI270770v1_alt"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0234"; repClass "LTR"; repEnd "713"; repFamily "ERV1"; repLeft "-21"; repStart "1"; ### ERVLB4_2_KI270772v1_alt ### chr2_KI270772v1_alt rmsk gene 127550 128662 . - . gene_id "ERVLB4_2_KI270772v1_alt"; transcript_id "ERVLB4_2_KI270772v1_alt"; locus "ERVLB4_2_KI270772v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1963"; model_cov "1019"; model_pct "17.8"; chr2_KI270772v1_alt rmsk exon 127550 128356 3274 - . gene_id "ERVLB4_2_KI270772v1_alt"; transcript_id "ERVLB4_2_KI270772v1_alt"; locus "ERVLB4_2_KI270772v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1963"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr2_KI270772v1_alt rmsk exon 128473 128662 1000 - . gene_id "ERVLB4_2_KI270772v1_alt"; transcript_id "ERVLB4_2_KI270772v1_alt"; locus "ERVLB4_2_KI270772v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1963"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; ### ERVLB4_2_KI270775v1_alt(a) ### chr2_KI270775v1_alt rmsk gene 50560 52598 . + . gene_id "ERVLB4_2_KI270775v1_alt(a)"; transcript_id "ERVLB4_2_KI270775v1_alt(a)"; locus "ERVLB4_2_KI270775v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1964"; model_cov "2069"; model_pct "36.2"; chr2_KI270775v1_alt rmsk exon 50560 52598 10443 + . gene_id "ERVLB4_2_KI270775v1_alt(a)"; transcript_id "ERVLB4_2_KI270775v1_alt(a)"; locus "ERVLB4_2_KI270775v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1964"; repClass "LTR"; repEnd "4323"; repFamily "ERVL"; repLeft "-1391"; repStart "2254"; ### ERVLB4_2_KI270775v1_alt(b) ### chr2_KI270775v1_alt rmsk gene 63893 65154 . + . gene_id "ERVLB4_2_KI270775v1_alt(b)"; transcript_id "ERVLB4_2_KI270775v1_alt(b)"; locus "ERVLB4_2_KI270775v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1965"; model_cov "911"; model_pct "15.9"; chr2_KI270775v1_alt rmsk exon 63893 64747 3025 + . gene_id "ERVLB4_2_KI270775v1_alt(b)"; transcript_id "ERVLB4_2_KI270775v1_alt(b)"; locus "ERVLB4_2_KI270775v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1965"; repClass "LTR"; repEnd "5707"; repFamily "ERVL"; repLeft "-7"; repStart "4796"; chr2_KI270775v1_alt rmsk exon 64753 64810 245 + . gene_id "ERVLB4_2_KI270775v1_alt(b)"; transcript_id "ERVLB4_2_KI270775v1_alt(b)"; locus "ERVLB4_2_KI270775v1_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1965"; repClass "LTR"; repEnd "-8"; repFamily "ERVL"; repLeft "-405"; repStart "-66"; chr2_KI270775v1_alt rmsk exon 64904 65154 1056 + . gene_id "ERVLB4_2_KI270775v1_alt(b)"; transcript_id "ERVLB4_2_KI270775v1_alt(b)"; locus "ERVLB4_2_KI270775v1_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1965"; repClass "LTR"; repEnd "330"; repFamily "ERVL"; repLeft "-67"; repStart "71"; ### MER4_2_KI270776v1_alt ### chr2_KI270776v1_alt rmsk gene 472 5298 . + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0996"; model_cov "2926"; model_pct "44.3"; chr2_KI270776v1_alt rmsk exon 472 1145 4106 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "15"; chr2_KI270776v1_alt rmsk exon 1167 1425 1352 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "1031"; repFamily "ERV1"; repLeft "-5567"; repStart "764"; chr2_KI270776v1_alt rmsk exon 1436 1697 1352 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "2014"; repFamily "ERV1"; repLeft "-4584"; repStart "1754"; chr2_KI270776v1_alt rmsk exon 1981 2019 1352 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "2044"; repFamily "ERV1"; repLeft "-4554"; repStart "2015"; chr2_KI270776v1_alt rmsk exon 2059 2580 9035 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "5430"; repFamily "ERV1"; repLeft "-1168"; repStart "4893"; chr2_KI270776v1_alt rmsk exon 3333 4099 9035 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "6188"; repFamily "ERV1"; repLeft "-410"; repStart "5431"; chr2_KI270776v1_alt rmsk exon 4424 4840 9035 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0996"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "6189"; chr2_KI270776v1_alt rmsk exon 4852 5298 2949 + . gene_id "MER4_2_KI270776v1_alt"; transcript_id "MER4_2_KI270776v1_alt"; locus "MER4_2_KI270776v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0996"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-24"; repStart "1"; ### MER4B_2_KI270776v1_alt ### chr2_KI270776v1_alt rmsk gene 46645 49402 . - . gene_id "MER4B_2_KI270776v1_alt"; transcript_id "MER4B_2_KI270776v1_alt"; locus "MER4B_2_KI270776v1_alt"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0583"; model_cov "2086"; model_pct "30.9"; chr2_KI270776v1_alt rmsk exon 46645 47320 3845 - . gene_id "MER4B_2_KI270776v1_alt"; transcript_id "MER4B_2_KI270776v1_alt"; locus "MER4B_2_KI270776v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0583"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "6085"; repStart "-1"; chr2_KI270776v1_alt rmsk exon 47640 47837 3845 - . gene_id "MER4B_2_KI270776v1_alt"; transcript_id "MER4B_2_KI270776v1_alt"; locus "MER4B_2_KI270776v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0583"; repClass "LTR"; repEnd "6084"; repFamily "ERV1"; repLeft "5832"; repStart "-674"; chr2_KI270776v1_alt rmsk exon 48433 49113 3845 - . gene_id "MER4B_2_KI270776v1_alt"; transcript_id "MER4B_2_KI270776v1_alt"; locus "MER4B_2_KI270776v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0583"; repClass "LTR"; repEnd "5831"; repFamily "ERV1"; repLeft "4783"; repStart "-927"; chr2_KI270776v1_alt rmsk exon 49263 49402 526 - . gene_id "MER4B_2_KI270776v1_alt"; transcript_id "MER4B_2_KI270776v1_alt"; locus "MER4B_2_KI270776v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0583"; repClass "LTR"; repEnd "2588"; repFamily "ERV1"; repLeft "2474"; repStart "-4170"; ### MER101_2_KI270776v1_alt ### chr2_KI270776v1_alt rmsk gene 50330 52290 . - . gene_id "MER101_2_KI270776v1_alt"; transcript_id "MER101_2_KI270776v1_alt"; locus "MER101_2_KI270776v1_alt"; category "internal"; intModel "MER101-int"; locid "MER101-int_0453"; model_cov "1303"; model_pct "19.6"; chr2_KI270776v1_alt rmsk exon 50330 51092 3219 - . gene_id "MER101_2_KI270776v1_alt"; transcript_id "MER101_2_KI270776v1_alt"; locus "MER101_2_KI270776v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0453"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "2794"; repStart "-2868"; chr2_KI270776v1_alt rmsk exon 51384 51475 1341 - . gene_id "MER101_2_KI270776v1_alt"; transcript_id "MER101_2_KI270776v1_alt"; locus "MER101_2_KI270776v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0453"; repClass "LTR"; repEnd "3532"; repFamily "ERV1"; repLeft "3434"; repStart "-3107"; chr2_KI270776v1_alt rmsk exon 51767 51885 1341 - . gene_id "MER101_2_KI270776v1_alt"; transcript_id "MER101_2_KI270776v1_alt"; locus "MER101_2_KI270776v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0453"; repClass "LTR"; repEnd "3433"; repFamily "ERV1"; repLeft "3335"; repStart "-3206"; chr2_KI270776v1_alt rmsk exon 52158 52290 1341 - . gene_id "MER101_2_KI270776v1_alt"; transcript_id "MER101_2_KI270776v1_alt"; locus "MER101_2_KI270776v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0453"; repClass "LTR"; repEnd "3334"; repFamily "ERV1"; repLeft "3204"; repStart "-3305"; ### HERVH_2_KI270894v1_alt ### chr2_KI270894v1_alt rmsk gene 17186 23070 . + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1323"; model_cov "4991"; model_pct "64.7"; chr2_KI270894v1_alt rmsk exon 17186 17745 2781 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr2_KI270894v1_alt rmsk exon 17761 19868 9788 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "2427"; repFamily "ERV1"; repLeft "-5286"; repStart "14"; chr2_KI270894v1_alt rmsk exon 19852 20653 4790 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "3587"; repFamily "ERV1"; repLeft "-4126"; repStart "2790"; chr2_KI270894v1_alt rmsk exon 20648 21065 1333 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "4161"; repFamily "ERV1"; repLeft "-3552"; repStart "3804"; chr2_KI270894v1_alt rmsk exon 21108 21477 2313 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "4529"; repFamily "ERV1"; repLeft "-3184"; repStart "4158"; chr2_KI270894v1_alt rmsk exon 21478 21941 2462 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "6952"; repFamily "ERV1"; repLeft "-761"; repStart "6489"; chr2_KI270894v1_alt rmsk exon 21930 21977 250 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7663"; chr2_KI270894v1_alt rmsk exon 21979 22517 3533 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7173"; chr2_KI270894v1_alt rmsk exon 22518 23070 2780 + . gene_id "HERVH_2_KI270894v1_alt"; transcript_id "HERVH_2_KI270894v1_alt"; locus "HERVH_2_KI270894v1_alt"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1323"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_2_KI270894v1_alt ### chr2_KI270894v1_alt rmsk gene 80190 81300 . + . gene_id "ERVLB4_2_KI270894v1_alt"; transcript_id "ERVLB4_2_KI270894v1_alt"; locus "ERVLB4_2_KI270894v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1968"; model_cov "1019"; model_pct "17.8"; chr2_KI270894v1_alt rmsk exon 80190 80377 1046 + . gene_id "ERVLB4_2_KI270894v1_alt"; transcript_id "ERVLB4_2_KI270894v1_alt"; locus "ERVLB4_2_KI270894v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1968"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr2_KI270894v1_alt rmsk exon 80494 81300 3491 + . gene_id "ERVLB4_2_KI270894v1_alt"; transcript_id "ERVLB4_2_KI270894v1_alt"; locus "ERVLB4_2_KI270894v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1968"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### HML3_3_GL383526v1_alt ### chr3_GL383526v1_alt rmsk gene 122432 127896 . + . gene_id "HML3_3_GL383526v1_alt"; transcript_id "HML3_3_GL383526v1_alt"; locus "HML3_3_GL383526v1_alt"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0277"; model_cov "4964"; model_pct "82.4"; chr3_GL383526v1_alt rmsk exon 122432 122959 3750 + . gene_id "HML3_3_GL383526v1_alt"; transcript_id "HML3_3_GL383526v1_alt"; locus "HML3_3_GL383526v1_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0277"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3_GL383526v1_alt rmsk exon 122960 123616 4879 + . gene_id "HML3_3_GL383526v1_alt"; transcript_id "HML3_3_GL383526v1_alt"; locus "HML3_3_GL383526v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0277"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "-5347"; repStart "1"; chr3_GL383526v1_alt rmsk exon 123617 127896 34167 + . gene_id "HML3_3_GL383526v1_alt"; transcript_id "HML3_3_GL383526v1_alt"; locus "HML3_3_GL383526v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0277"; repClass "LTR"; repEnd "5928"; repFamily "ERVK"; repLeft "-93"; repStart "1637"; ### ERV316A3_3_JH636055v2_alt(a) ### chr3_JH636055v2_alt rmsk gene 55440 57000 . + . gene_id "ERV316A3_3_JH636055v2_alt(a)"; transcript_id "ERV316A3_3_JH636055v2_alt(a)"; locus "ERV316A3_3_JH636055v2_alt(a)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2870"; model_cov "847"; model_pct "16.2"; chr3_JH636055v2_alt rmsk exon 55440 55456 650 + . gene_id "ERV316A3_3_JH636055v2_alt(a)"; transcript_id "ERV316A3_3_JH636055v2_alt(a)"; locus "ERV316A3_3_JH636055v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2870"; repClass "LTR"; repEnd "507"; repFamily "ERVL"; repLeft "-4719"; repStart "496"; chr3_JH636055v2_alt rmsk exon 55874 56154 650 + . gene_id "ERV316A3_3_JH636055v2_alt(a)"; transcript_id "ERV316A3_3_JH636055v2_alt(a)"; locus "ERV316A3_3_JH636055v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2870"; repClass "LTR"; repEnd "801"; repFamily "ERVL"; repLeft "-4425"; repStart "508"; chr3_JH636055v2_alt rmsk exon 56181 56254 1581 + . gene_id "ERV316A3_3_JH636055v2_alt(a)"; transcript_id "ERV316A3_3_JH636055v2_alt(a)"; locus "ERV316A3_3_JH636055v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2870"; repClass "LTR"; repEnd "921"; repFamily "ERVL"; repLeft "-4305"; repStart "853"; chr3_JH636055v2_alt rmsk exon 56560 57000 1581 + . gene_id "ERV316A3_3_JH636055v2_alt(a)"; transcript_id "ERV316A3_3_JH636055v2_alt(a)"; locus "ERV316A3_3_JH636055v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2870"; repClass "LTR"; repEnd "1397"; repFamily "ERVL"; repLeft "-3829"; repStart "922"; ### ERV316A3_3_JH636055v2_alt(b) ### chr3_JH636055v2_alt rmsk gene 57273 58308 . + . gene_id "ERV316A3_3_JH636055v2_alt(b)"; transcript_id "ERV316A3_3_JH636055v2_alt(b)"; locus "ERV316A3_3_JH636055v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2871"; model_cov "724"; model_pct "13.9"; chr3_JH636055v2_alt rmsk exon 57273 57437 2074 + . gene_id "ERV316A3_3_JH636055v2_alt(b)"; transcript_id "ERV316A3_3_JH636055v2_alt(b)"; locus "ERV316A3_3_JH636055v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2871"; repClass "LTR"; repEnd "1339"; repFamily "ERVL"; repLeft "-3887"; repStart "1188"; chr3_JH636055v2_alt rmsk exon 57732 58308 2121 + . gene_id "ERV316A3_3_JH636055v2_alt(b)"; transcript_id "ERV316A3_3_JH636055v2_alt(b)"; locus "ERV316A3_3_JH636055v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2871"; repClass "LTR"; repEnd "1913"; repFamily "ERVL"; repLeft "-3313"; repStart "1340"; ### HERVL_3_KI270778v1_alt ### chr3_KI270778v1_alt rmsk gene 46543 52690 . - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1459"; model_cov "3565"; model_pct "63.1"; chr3_KI270778v1_alt rmsk exon 46543 47056 1453 - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1459"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-52"; repStart "0"; chr3_KI270778v1_alt rmsk exon 47057 47828 5034 - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1459"; repClass "LTR"; repEnd "3714"; repFamily "ERVL"; repLeft "2908"; repStart "-1940"; chr3_KI270778v1_alt rmsk exon 49397 50504 7369 - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1459"; repClass "LTR"; repEnd "2910"; repFamily "ERVL"; repLeft "1815"; repStart "-2744"; chr3_KI270778v1_alt rmsk exon 50475 52138 10629 - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1459"; repClass "LTR"; repEnd "1665"; repFamily "ERVL"; repLeft "1"; repStart "-3989"; chr3_KI270778v1_alt rmsk exon 52139 52690 1785 - . gene_id "HERVL_3_KI270778v1_alt"; transcript_id "HERVL_3_KI270778v1_alt"; locus "HERVL_3_KI270778v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1459"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "-98"; repStart "0"; ### ERV316A3_3_KI270778v1_alt ### chr3_KI270778v1_alt rmsk gene 112861 114023 . - . gene_id "ERV316A3_3_KI270778v1_alt"; transcript_id "ERV316A3_3_KI270778v1_alt"; locus "ERV316A3_3_KI270778v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2872"; model_cov "1198"; model_pct "22.9"; chr3_KI270778v1_alt rmsk exon 112861 114023 1278 - . gene_id "ERV316A3_3_KI270778v1_alt"; transcript_id "ERV316A3_3_KI270778v1_alt"; locus "ERV316A3_3_KI270778v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2872"; repClass "LTR"; repEnd "2931"; repFamily "ERVL"; repLeft "1733"; repStart "-2295"; ### ERVL_3_KI270778v1_alt ### chr3_KI270778v1_alt rmsk gene 170646 173585 . + . gene_id "ERVL_3_KI270778v1_alt"; transcript_id "ERVL_3_KI270778v1_alt"; locus "ERVL_3_KI270778v1_alt"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0516"; model_cov "2625"; model_pct "45.6"; chr3_KI270778v1_alt rmsk exon 170646 171416 3958 + . gene_id "ERVL_3_KI270778v1_alt"; transcript_id "ERVL_3_KI270778v1_alt"; locus "ERVL_3_KI270778v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0516"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "-2384"; repStart "2592"; chr3_KI270778v1_alt rmsk exon 171421 172732 8571 + . gene_id "ERVL_3_KI270778v1_alt"; transcript_id "ERVL_3_KI270778v1_alt"; locus "ERVL_3_KI270778v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0516"; repClass "LTR"; repEnd "5236"; repFamily "ERVL"; repLeft "-521"; repStart "3829"; chr3_KI270778v1_alt rmsk exon 173115 173585 8571 + . gene_id "ERVL_3_KI270778v1_alt"; transcript_id "ERVL_3_KI270778v1_alt"; locus "ERVL_3_KI270778v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0516"; repClass "LTR"; repEnd "5674"; repFamily "ERVL"; repLeft "-83"; repStart "5237"; ### HERVH_3_KI270778v1_alt ### chr3_KI270778v1_alt rmsk gene 204684 210497 . - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1324"; model_cov "5269"; model_pct "68.3"; chr3_KI270778v1_alt rmsk exon 204684 205082 2469 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr3_KI270778v1_alt rmsk exon 205083 205459 2254 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr3_KI270778v1_alt rmsk exon 205460 205674 1385 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr3_KI270778v1_alt rmsk exon 205676 206344 4440 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4480"; repStart "-2564"; chr3_KI270778v1_alt rmsk exon 206341 210096 16204 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "1"; repStart "-3720"; chr3_KI270778v1_alt rmsk exon 210099 210497 2430 - . gene_id "HERVH_3_KI270778v1_alt"; transcript_id "HERVH_3_KI270778v1_alt"; locus "HERVH_3_KI270778v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1324"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_3_KI270779v1_alt ### chr3_KI270779v1_alt rmsk gene 87854 90970 . + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0997"; model_cov "1983"; model_pct "30.1"; chr3_KI270779v1_alt rmsk exon 87854 88305 2987 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0997"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3_KI270779v1_alt rmsk exon 88309 88816 2405 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "-1197"; repFamily "ERV1"; repLeft "-7795"; repStart "-1671"; chr3_KI270779v1_alt rmsk exon 88795 88861 290 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "621"; chr3_KI270779v1_alt rmsk exon 88849 88959 412 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr3_KI270779v1_alt rmsk exon 89020 89381 1452 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chr3_KI270779v1_alt rmsk exon 89377 89620 1453 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "-6341"; repStart "13"; chr3_KI270779v1_alt rmsk exon 89618 89911 1295 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "-5646"; repStart "630"; chr3_KI270779v1_alt rmsk exon 90221 90312 1295 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "-5590"; repStart "953"; chr3_KI270779v1_alt rmsk exon 90294 90493 1822 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "-4631"; repStart "1764"; chr3_KI270779v1_alt rmsk exon 90808 90970 1822 + . gene_id "MER4_3_KI270779v1_alt"; transcript_id "MER4_3_KI270779v1_alt"; locus "MER4_3_KI270779v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0997"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "-4472"; repStart "1968"; ### HERVE_3_KI270780v1_alt(a) ### chr3_KI270780v1_alt rmsk gene 28622 33392 . + . gene_id "HERVE_3_KI270780v1_alt(a)"; transcript_id "HERVE_3_KI270780v1_alt(a)"; locus "HERVE_3_KI270780v1_alt(a)"; category "oneside"; intModel "HERVE-int"; locid "HERVE-int_0176"; model_cov "4516"; model_pct "57.8"; chr3_KI270780v1_alt rmsk exon 28622 28802 1057 + . gene_id "HERVE_3_KI270780v1_alt(a)"; transcript_id "HERVE_3_KI270780v1_alt(a)"; locus "HERVE_3_KI270780v1_alt(a)"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0176"; repClass "LTR"; repEnd "485"; repFamily "ERV1"; repLeft "-16"; repStart "312"; chr3_KI270780v1_alt rmsk exon 28887 30123 31044 + . gene_id "HERVE_3_KI270780v1_alt(a)"; transcript_id "HERVE_3_KI270780v1_alt(a)"; locus "HERVE_3_KI270780v1_alt(a)"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0176"; repClass "LTR"; repEnd "1909"; repFamily "ERV1"; repLeft "-5904"; repStart "647"; chr3_KI270780v1_alt rmsk exon 30163 32453 31044 + . gene_id "HERVE_3_KI270780v1_alt(a)"; transcript_id "HERVE_3_KI270780v1_alt(a)"; locus "HERVE_3_KI270780v1_alt(a)"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0176"; repClass "LTR"; repEnd "4248"; repFamily "ERV1"; repLeft "-3565"; repStart "1910"; chr3_KI270780v1_alt rmsk exon 32498 33392 31044 + . gene_id "HERVE_3_KI270780v1_alt(a)"; transcript_id "HERVE_3_KI270780v1_alt(a)"; locus "HERVE_3_KI270780v1_alt(a)"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0176"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "4249"; ### HERVE_3_KI270780v1_alt(b) ### chr3_KI270780v1_alt rmsk gene 51568 55629 . + . gene_id "HERVE_3_KI270780v1_alt(b)"; transcript_id "HERVE_3_KI270780v1_alt(b)"; locus "HERVE_3_KI270780v1_alt(b)"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0177"; model_cov "4057"; model_pct "51.9"; chr3_KI270780v1_alt rmsk exon 51568 55629 29548 + . gene_id "HERVE_3_KI270780v1_alt(b)"; transcript_id "HERVE_3_KI270780v1_alt(b)"; locus "HERVE_3_KI270780v1_alt(b)"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0177"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### HERVE_3_KI270780v1_alt(c) ### chr3_KI270780v1_alt rmsk gene 74200 78251 . + . gene_id "HERVE_3_KI270780v1_alt(c)"; transcript_id "HERVE_3_KI270780v1_alt(c)"; locus "HERVE_3_KI270780v1_alt(c)"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0178"; model_cov "4057"; model_pct "51.9"; chr3_KI270780v1_alt rmsk exon 74200 78251 27479 + . gene_id "HERVE_3_KI270780v1_alt(c)"; transcript_id "HERVE_3_KI270780v1_alt(c)"; locus "HERVE_3_KI270780v1_alt(c)"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0178"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "1108"; ### ERVLB4_3_KI270780v1_alt(a) ### chr3_KI270780v1_alt rmsk gene 98699 99268 . - . gene_id "ERVLB4_3_KI270780v1_alt(a)"; transcript_id "ERVLB4_3_KI270780v1_alt(a)"; locus "ERVLB4_3_KI270780v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1970"; model_cov "601"; model_pct "10.5"; chr3_KI270780v1_alt rmsk exon 98699 99268 2700 - . gene_id "ERVLB4_3_KI270780v1_alt(a)"; transcript_id "ERVLB4_3_KI270780v1_alt(a)"; locus "ERVLB4_3_KI270780v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1970"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1503"; repStart "-3610"; ### ERVLB4_3_KI270780v1_alt(b) ### chr3_KI270780v1_alt rmsk gene 104822 105371 . - . gene_id "ERVLB4_3_KI270780v1_alt(b)"; transcript_id "ERVLB4_3_KI270780v1_alt(b)"; locus "ERVLB4_3_KI270780v1_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1971"; model_cov "581"; model_pct "10.2"; chr3_KI270780v1_alt rmsk exon 104822 105371 2642 - . gene_id "ERVLB4_3_KI270780v1_alt(b)"; transcript_id "ERVLB4_3_KI270780v1_alt(b)"; locus "ERVLB4_3_KI270780v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1971"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1523"; repStart "-3610"; ### HERVS71_3_KI270780v1_alt ### chr3_KI270780v1_alt rmsk gene 172246 179665 . + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0064"; model_cov "6457"; model_pct "71.9"; chr3_KI270780v1_alt rmsk exon 172246 172795 4015 + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0064"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3_KI270780v1_alt rmsk exon 172798 175954 22161 + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0064"; repClass "LTR"; repEnd "3230"; repFamily "ERV1"; repLeft "-5748"; repStart "4"; chr3_KI270780v1_alt rmsk exon 175970 178793 14577 + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0064"; repClass "LTR"; repEnd "7786"; repFamily "ERV1"; repLeft "-1192"; repStart "4870"; chr3_KI270780v1_alt rmsk exon 178791 179107 2220 + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0064"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8594"; chr3_KI270780v1_alt rmsk exon 179108 179665 4515 + . gene_id "HERVS71_3_KI270780v1_alt"; transcript_id "HERVS71_3_KI270780v1_alt"; locus "HERVS71_3_KI270780v1_alt"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0064"; repClass "LTR"; repEnd "558"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVH_3_KI270780v1_alt ### chr3_KI270780v1_alt rmsk gene 204056 209803 . + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1325"; model_cov "5110"; model_pct "66.3"; chr3_KI270780v1_alt rmsk exon 204056 204400 1905 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr3_KI270780v1_alt rmsk exon 204403 207299 19369 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "2984"; repFamily "ERV1"; repLeft "-4729"; repStart "1"; chr3_KI270780v1_alt rmsk exon 207296 208151 6104 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3138"; chr3_KI270780v1_alt rmsk exon 208154 208812 4485 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "5145"; repFamily "ERV1"; repLeft "-2568"; repStart "4488"; chr3_KI270780v1_alt rmsk exon 208810 209024 1267 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5593"; chr3_KI270780v1_alt rmsk exon 209025 209400 2276 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr3_KI270780v1_alt rmsk exon 209402 209803 2665 + . gene_id "HERVH_3_KI270780v1_alt"; transcript_id "HERVH_3_KI270780v1_alt"; locus "HERVH_3_KI270780v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1325"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "2"; ### ERV316A3_3_KI270781v1_alt ### chr3_KI270781v1_alt rmsk gene 67136 69268 . + . gene_id "ERV316A3_3_KI270781v1_alt"; transcript_id "ERV316A3_3_KI270781v1_alt"; locus "ERV316A3_3_KI270781v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2874"; model_cov "1016"; model_pct "19.4"; chr3_KI270781v1_alt rmsk exon 67136 67513 1318 + . gene_id "ERV316A3_3_KI270781v1_alt"; transcript_id "ERV316A3_3_KI270781v1_alt"; locus "ERV316A3_3_KI270781v1_alt"; repName "ERV3-16A3_LTR"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2874"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "-7"; repStart "3"; chr3_KI270781v1_alt rmsk exon 67541 67991 2140 + . gene_id "ERV316A3_3_KI270781v1_alt"; transcript_id "ERV316A3_3_KI270781v1_alt"; locus "ERV316A3_3_KI270781v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2874"; repClass "LTR"; repEnd "4273"; repFamily "ERVL"; repLeft "-953"; repStart "3799"; chr3_KI270781v1_alt rmsk exon 68859 69268 647 + . gene_id "ERV316A3_3_KI270781v1_alt"; transcript_id "ERV316A3_3_KI270781v1_alt"; locus "ERV316A3_3_KI270781v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2874"; repClass "LTR"; repEnd "4369"; repFamily "ERVL"; repLeft "-857"; repStart "3827"; ### ERVLB4_3_KI270781v1_alt ### chr3_KI270781v1_alt rmsk gene 79711 84411 . + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1972"; model_cov "3245"; model_pct "56.8"; chr3_KI270781v1_alt rmsk exon 79711 80314 3401 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "641"; repFamily "ERVL"; repLeft "-5073"; repStart "26"; chr3_KI270781v1_alt rmsk exon 80830 81187 2983 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "1000"; repFamily "ERVL"; repLeft "-4714"; repStart "652"; chr3_KI270781v1_alt rmsk exon 81499 81674 3607 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "1164"; repFamily "ERVL"; repLeft "-4550"; repStart "954"; chr3_KI270781v1_alt rmsk exon 81974 82537 3607 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "1719"; repFamily "ERVL"; repLeft "-3995"; repStart "1105"; chr3_KI270781v1_alt rmsk exon 82553 82812 1788 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "3351"; repFamily "ERVL"; repLeft "-2363"; repStart "3081"; chr3_KI270781v1_alt rmsk exon 82916 83589 7302 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "4119"; repFamily "ERVL"; repLeft "-1595"; repStart "3463"; chr3_KI270781v1_alt rmsk exon 83891 84411 7302 + . gene_id "ERVLB4_3_KI270781v1_alt"; transcript_id "ERVLB4_3_KI270781v1_alt"; locus "ERVLB4_3_KI270781v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1972"; repClass "LTR"; repEnd "4652"; repFamily "ERVL"; repLeft "-1062"; repStart "4120"; ### ERVLE_3_KI270783v1_alt ### chr3_KI270783v1_alt rmsk gene 87417 88039 . - . gene_id "ERVLE_3_KI270783v1_alt"; transcript_id "ERVLE_3_KI270783v1_alt"; locus "ERVLE_3_KI270783v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3796"; model_cov "620"; model_pct "10.9"; chr3_KI270783v1_alt rmsk exon 87417 88039 1262 - . gene_id "ERVLE_3_KI270783v1_alt"; transcript_id "ERVLE_3_KI270783v1_alt"; locus "ERVLE_3_KI270783v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3796"; repClass "LTR"; repEnd "5264"; repFamily "ERVL"; repLeft "4644"; repStart "-403"; ### HARLEQUIN_3_KI270783v1_alt ### chr3_KI270783v1_alt rmsk gene 90548 98031 . - . gene_id "HARLEQUIN_3_KI270783v1_alt"; transcript_id "HARLEQUIN_3_KI270783v1_alt"; locus "HARLEQUIN_3_KI270783v1_alt"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0197"; model_cov "6498"; model_pct "94.2"; chr3_KI270783v1_alt rmsk exon 90548 91013 3549 - . gene_id "HARLEQUIN_3_KI270783v1_alt"; transcript_id "HARLEQUIN_3_KI270783v1_alt"; locus "HARLEQUIN_3_KI270783v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0197"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr3_KI270783v1_alt rmsk exon 91014 96121 38178 - . gene_id "HARLEQUIN_3_KI270783v1_alt"; transcript_id "HARLEQUIN_3_KI270783v1_alt"; locus "HARLEQUIN_3_KI270783v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0197"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "1813"; repStart "0"; chr3_KI270783v1_alt rmsk exon 96105 97569 8165 - . gene_id "HARLEQUIN_3_KI270783v1_alt"; transcript_id "HARLEQUIN_3_KI270783v1_alt"; locus "HARLEQUIN_3_KI270783v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0197"; repClass "LTR"; repEnd "1416"; repFamily "ERV1"; repLeft "1"; repStart "-5480"; chr3_KI270783v1_alt rmsk exon 97570 98031 3509 - . gene_id "HARLEQUIN_3_KI270783v1_alt"; transcript_id "HARLEQUIN_3_KI270783v1_alt"; locus "HARLEQUIN_3_KI270783v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0197"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_3_KI270783v1_alt ### chr3_KI270783v1_alt rmsk gene 108426 109187 . + . gene_id "MER41_3_KI270783v1_alt"; transcript_id "MER41_3_KI270783v1_alt"; locus "MER41_3_KI270783v1_alt"; category "internal"; intModel "MER41-int"; locid "MER41-int_0642"; model_cov "811"; model_pct "13.6"; chr3_KI270783v1_alt rmsk exon 108426 108966 3496 + . gene_id "MER41_3_KI270783v1_alt"; transcript_id "MER41_3_KI270783v1_alt"; locus "MER41_3_KI270783v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0642"; repClass "LTR"; repEnd "859"; repFamily "ERV1"; repLeft "-5087"; repStart "290"; chr3_KI270783v1_alt rmsk exon 108950 109187 1451 + . gene_id "MER41_3_KI270783v1_alt"; transcript_id "MER41_3_KI270783v1_alt"; locus "MER41_3_KI270783v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0642"; repClass "LTR"; repEnd "201"; repFamily "ERV1"; repLeft "-5745"; repStart "-41"; ### PRIMA41_3_KI270784v1_alt ### chr3_KI270784v1_alt rmsk gene 115971 117165 . - . gene_id "PRIMA41_3_KI270784v1_alt"; transcript_id "PRIMA41_3_KI270784v1_alt"; locus "PRIMA41_3_KI270784v1_alt"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0186"; model_cov "1213"; model_pct "15.6"; chr3_KI270784v1_alt rmsk exon 115971 117165 1961 - . gene_id "PRIMA41_3_KI270784v1_alt"; transcript_id "PRIMA41_3_KI270784v1_alt"; locus "PRIMA41_3_KI270784v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0186"; repClass "LTR"; repEnd "2482"; repFamily "ERV1"; repLeft "1269"; repStart "-5274"; ### MER4_3_KI270895v1_alt(a) ### chr3_KI270895v1_alt rmsk gene 73728 75290 . - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; category "internal"; intModel "MER4-int"; locid "MER4-int_0998"; model_cov "880"; model_pct "13.3"; chr3_KI270895v1_alt rmsk exon 73728 73890 1843 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "1968"; repStart "-4472"; chr3_KI270895v1_alt rmsk exon 74204 74403 1843 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1764"; repStart "-4631"; chr3_KI270895v1_alt rmsk exon 74385 74476 1140 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "953"; repStart "-5590"; chr3_KI270895v1_alt rmsk exon 74790 74996 1140 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "764"; repStart "-5646"; chr3_KI270895v1_alt rmsk exon 75018 75075 371 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "630"; repStart "-5911"; chr3_KI270895v1_alt rmsk exon 75073 75290 1485 - . gene_id "MER4_3_KI270895v1_alt(a)"; transcript_id "MER4_3_KI270895v1_alt(a)"; locus "MER4_3_KI270895v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0998"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "38"; repStart "-6341"; ### MER4_3_KI270895v1_alt(b) ### chr3_KI270895v1_alt rmsk gene 75309 76840 . - . gene_id "MER4_3_KI270895v1_alt(b)"; transcript_id "MER4_3_KI270895v1_alt(b)"; locus "MER4_3_KI270895v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_0999"; model_cov "1088"; model_pct "16.5"; chr3_KI270895v1_alt rmsk exon 75309 75670 1388 - . gene_id "MER4_3_KI270895v1_alt(b)"; transcript_id "MER4_3_KI270895v1_alt(b)"; locus "MER4_3_KI270895v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0999"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2112"; repStart "-4166"; chr3_KI270895v1_alt rmsk exon 75734 75845 403 - . gene_id "MER4_3_KI270895v1_alt(b)"; transcript_id "MER4_3_KI270895v1_alt(b)"; locus "MER4_3_KI270895v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0999"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr3_KI270895v1_alt rmsk exon 75833 76385 2449 - . gene_id "MER4_3_KI270895v1_alt(b)"; transcript_id "MER4_3_KI270895v1_alt(b)"; locus "MER4_3_KI270895v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_0999"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr3_KI270895v1_alt rmsk exon 76389 76840 3147 - . gene_id "MER4_3_KI270895v1_alt(b)"; transcript_id "MER4_3_KI270895v1_alt(b)"; locus "MER4_3_KI270895v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_0999"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_3_KI270924v1_alt(a) ### chr3_KI270924v1_alt rmsk gene 75571 77138 . - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; category "internal"; intModel "MER4-int"; locid "MER4-int_1000"; model_cov "957"; model_pct "14.5"; chr3_KI270924v1_alt rmsk exon 75571 75733 1843 - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1000"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "1968"; repStart "-4472"; chr3_KI270924v1_alt rmsk exon 76048 76247 1843 - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1000"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1764"; repStart "-4631"; chr3_KI270924v1_alt rmsk exon 76229 76320 1297 - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1000"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "953"; repStart "-5590"; chr3_KI270924v1_alt rmsk exon 76630 76923 1297 - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1000"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "630"; repStart "-5646"; chr3_KI270924v1_alt rmsk exon 76921 77138 1485 - . gene_id "MER4_3_KI270924v1_alt(a)"; transcript_id "MER4_3_KI270924v1_alt(a)"; locus "MER4_3_KI270924v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1000"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "38"; repStart "-6341"; ### MER4_3_KI270924v1_alt(b) ### chr3_KI270924v1_alt rmsk gene 77149 78687 . - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1001"; model_cov "942"; model_pct "14.3"; chr3_KI270924v1_alt rmsk exon 77149 77521 1388 - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1001"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2112"; repStart "-4166"; chr3_KI270924v1_alt rmsk exon 77582 77692 403 - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1001"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr3_KI270924v1_alt rmsk exon 77680 77746 290 - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1001"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "621"; repStart "-5912"; chr3_KI270924v1_alt rmsk exon 77725 78232 2390 - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1001"; repClass "LTR"; repEnd "-1197"; repFamily "ERV1"; repLeft "-1671"; repStart "-7795"; chr3_KI270924v1_alt rmsk exon 78236 78687 3164 - . gene_id "MER4_3_KI270924v1_alt(b)"; transcript_id "MER4_3_KI270924v1_alt(b)"; locus "MER4_3_KI270924v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1001"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_3_KI270934v1_alt(a) ### chr3_KI270934v1_alt rmsk gene 73727 75288 . - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; category "internal"; intModel "MER4-int"; locid "MER4-int_1002"; model_cov "880"; model_pct "13.3"; chr3_KI270934v1_alt rmsk exon 73727 73889 1843 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "1968"; repStart "-4472"; chr3_KI270934v1_alt rmsk exon 74202 74401 1843 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1764"; repStart "-4631"; chr3_KI270934v1_alt rmsk exon 74383 74474 1140 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "953"; repStart "-5590"; chr3_KI270934v1_alt rmsk exon 74788 74994 1140 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "764"; repStart "-5646"; chr3_KI270934v1_alt rmsk exon 75016 75073 371 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "630"; repStart "-5911"; chr3_KI270934v1_alt rmsk exon 75071 75288 1485 - . gene_id "MER4_3_KI270934v1_alt(a)"; transcript_id "MER4_3_KI270934v1_alt(a)"; locus "MER4_3_KI270934v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1002"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "38"; repStart "-6341"; ### MER4_3_KI270934v1_alt(b) ### chr3_KI270934v1_alt rmsk gene 75307 76838 . - . gene_id "MER4_3_KI270934v1_alt(b)"; transcript_id "MER4_3_KI270934v1_alt(b)"; locus "MER4_3_KI270934v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1003"; model_cov "1088"; model_pct "16.5"; chr3_KI270934v1_alt rmsk exon 75307 75668 1388 - . gene_id "MER4_3_KI270934v1_alt(b)"; transcript_id "MER4_3_KI270934v1_alt(b)"; locus "MER4_3_KI270934v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1003"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2112"; repStart "-4166"; chr3_KI270934v1_alt rmsk exon 75732 75843 403 - . gene_id "MER4_3_KI270934v1_alt(b)"; transcript_id "MER4_3_KI270934v1_alt(b)"; locus "MER4_3_KI270934v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1003"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr3_KI270934v1_alt rmsk exon 75831 76383 2449 - . gene_id "MER4_3_KI270934v1_alt(b)"; transcript_id "MER4_3_KI270934v1_alt(b)"; locus "MER4_3_KI270934v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1003"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr3_KI270934v1_alt rmsk exon 76387 76838 3147 - . gene_id "MER4_3_KI270934v1_alt(b)"; transcript_id "MER4_3_KI270934v1_alt(b)"; locus "MER4_3_KI270934v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1003"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_3_KI270935v1_alt ### chr3_KI270935v1_alt rmsk gene 87854 90970 . + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1004"; model_cov "1983"; model_pct "30.1"; chr3_KI270935v1_alt rmsk exon 87854 88305 2987 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1004"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr3_KI270935v1_alt rmsk exon 88309 88816 2405 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "-1197"; repFamily "ERV1"; repLeft "-7795"; repStart "-1671"; chr3_KI270935v1_alt rmsk exon 88795 88861 290 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "621"; chr3_KI270935v1_alt rmsk exon 88849 88959 412 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr3_KI270935v1_alt rmsk exon 89020 89381 1452 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "2491"; repFamily "ERV1"; repLeft "-4107"; repStart "2112"; chr3_KI270935v1_alt rmsk exon 89377 89620 1453 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "-6341"; repStart "13"; chr3_KI270935v1_alt rmsk exon 89618 89911 1295 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "-5646"; repStart "630"; chr3_KI270935v1_alt rmsk exon 90221 90312 1295 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "-5590"; repStart "953"; chr3_KI270935v1_alt rmsk exon 90294 90493 1822 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "-4631"; repStart "1764"; chr3_KI270935v1_alt rmsk exon 90808 90970 1822 + . gene_id "MER4_3_KI270935v1_alt"; transcript_id "MER4_3_KI270935v1_alt"; locus "MER4_3_KI270935v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1004"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "-4472"; repStart "1968"; ### MER4_3_KI270936v1_alt(a) ### chr3_KI270936v1_alt rmsk gene 73723 75284 . - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; category "internal"; intModel "MER4-int"; locid "MER4-int_1005"; model_cov "880"; model_pct "13.3"; chr3_KI270936v1_alt rmsk exon 73723 73885 1843 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "1968"; repStart "-4472"; chr3_KI270936v1_alt rmsk exon 74198 74397 1843 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1764"; repStart "-4631"; chr3_KI270936v1_alt rmsk exon 74379 74470 1140 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "953"; repStart "-5590"; chr3_KI270936v1_alt rmsk exon 74784 74990 1140 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "764"; repStart "-5646"; chr3_KI270936v1_alt rmsk exon 75012 75069 371 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "630"; repStart "-5911"; chr3_KI270936v1_alt rmsk exon 75067 75284 1485 - . gene_id "MER4_3_KI270936v1_alt(a)"; transcript_id "MER4_3_KI270936v1_alt(a)"; locus "MER4_3_KI270936v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1005"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "38"; repStart "-6341"; ### MER4_3_KI270936v1_alt(b) ### chr3_KI270936v1_alt rmsk gene 75305 76836 . - . gene_id "MER4_3_KI270936v1_alt(b)"; transcript_id "MER4_3_KI270936v1_alt(b)"; locus "MER4_3_KI270936v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1006"; model_cov "1088"; model_pct "16.5"; chr3_KI270936v1_alt rmsk exon 75305 75666 1388 - . gene_id "MER4_3_KI270936v1_alt(b)"; transcript_id "MER4_3_KI270936v1_alt(b)"; locus "MER4_3_KI270936v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1006"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2112"; repStart "-4166"; chr3_KI270936v1_alt rmsk exon 75730 75841 403 - . gene_id "MER4_3_KI270936v1_alt(b)"; transcript_id "MER4_3_KI270936v1_alt(b)"; locus "MER4_3_KI270936v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1006"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr3_KI270936v1_alt rmsk exon 75829 76381 2449 - . gene_id "MER4_3_KI270936v1_alt(b)"; transcript_id "MER4_3_KI270936v1_alt(b)"; locus "MER4_3_KI270936v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1006"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr3_KI270936v1_alt rmsk exon 76385 76836 3123 - . gene_id "MER4_3_KI270936v1_alt(b)"; transcript_id "MER4_3_KI270936v1_alt(b)"; locus "MER4_3_KI270936v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1006"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_3_KI270937v1_alt ### chr3_KI270937v1_alt rmsk gene 73946 77057 . - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1007"; model_cov "1968"; model_pct "29.8"; chr3_KI270937v1_alt rmsk exon 73946 74108 1843 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "2126"; repFamily "ERV1"; repLeft "1968"; repStart "-4472"; chr3_KI270937v1_alt rmsk exon 74422 74621 1843 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "1967"; repFamily "ERV1"; repLeft "1764"; repStart "-4631"; chr3_KI270937v1_alt rmsk exon 74603 74694 1123 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "1008"; repFamily "ERV1"; repLeft "953"; repStart "-5590"; chr3_KI270937v1_alt rmsk exon 75008 75214 1123 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "952"; repFamily "ERV1"; repLeft "764"; repStart "-5646"; chr3_KI270937v1_alt rmsk exon 75236 75293 371 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "630"; repStart "-5911"; chr3_KI270937v1_alt rmsk exon 75291 75508 1485 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "257"; repFamily "ERV1"; repLeft "38"; repStart "-6341"; chr3_KI270937v1_alt rmsk exon 75515 75887 1388 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "2112"; repStart "-4166"; chr3_KI270937v1_alt rmsk exon 75951 76062 403 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-722"; repStart "-7237"; chr3_KI270937v1_alt rmsk exon 76050 76602 2449 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1007"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "1"; repStart "-5912"; chr3_KI270937v1_alt rmsk exon 76606 77057 3133 - . gene_id "MER4_3_KI270937v1_alt"; transcript_id "MER4_3_KI270937v1_alt"; locus "MER4_3_KI270937v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1007"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4_4_GL000257v2_alt(a) ### chr4_GL000257v2_alt rmsk gene 98399 104200 . + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; category "prototype"; intModel "MER4-int"; locid "MER4-int_1008"; model_cov "3176"; model_pct "48.1"; chr4_GL000257v2_alt rmsk exon 98399 98838 2803 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1008"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4_GL000257v2_alt rmsk exon 98844 99162 2370 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "348"; repFamily "ERV1"; repLeft "-6250"; repStart "1"; chr4_GL000257v2_alt rmsk exon 99472 99557 2370 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "419"; repFamily "ERV1"; repLeft "-6179"; repStart "349"; chr4_GL000257v2_alt rmsk exon 99960 100233 2370 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "816"; repFamily "ERV1"; repLeft "-5782"; repStart "345"; chr4_GL000257v2_alt rmsk exon 100361 100415 343 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "-5706"; repStart "838"; chr4_GL000257v2_alt rmsk exon 100410 100867 7447 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "1484"; repFamily "ERV1"; repLeft "-5114"; repStart "994"; chr4_GL000257v2_alt rmsk exon 101268 102261 7447 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "2473"; repFamily "ERV1"; repLeft "-4125"; repStart "1485"; chr4_GL000257v2_alt rmsk exon 102886 102908 7447 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "2494"; repFamily "ERV1"; repLeft "-4104"; repStart "2474"; chr4_GL000257v2_alt rmsk exon 103039 103757 3883 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1008"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5860"; chr4_GL000257v2_alt rmsk exon 103758 104200 2969 + . gene_id "MER4_4_GL000257v2_alt(a)"; transcript_id "MER4_4_GL000257v2_alt(a)"; locus "MER4_4_GL000257v2_alt(a)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1008"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER4_4_GL000257v2_alt(b) ### chr4_GL000257v2_alt rmsk gene 233337 237741 . + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1011"; model_cov "4053"; model_pct "61.4"; chr4_GL000257v2_alt rmsk exon 233337 233988 4377 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1011"; repClass "LTR"; repEnd "688"; repFamily "ERV1"; repLeft "-5910"; repStart "40"; chr4_GL000257v2_alt rmsk exon 234014 234252 1067 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1011"; repClass "LTR"; repEnd "1025"; repFamily "ERV1"; repLeft "-5573"; repStart "778"; chr4_GL000257v2_alt rmsk exon 234251 234993 3838 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1011"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1748"; chr4_GL000257v2_alt rmsk exon 235201 237511 13652 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1011"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4173"; chr4_GL000257v2_alt rmsk exon 237519 237665 805 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1011"; repClass "LTR"; repEnd "181"; repFamily "ERV1"; repLeft "-291"; repStart "1"; chr4_GL000257v2_alt rmsk exon 237683 237741 379 + . gene_id "MER4_4_GL000257v2_alt(b)"; transcript_id "MER4_4_GL000257v2_alt(b)"; locus "MER4_4_GL000257v2_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1011"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "415"; ### HERVH48_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 248097 253827 . + . gene_id "HERVH48_4_GL000257v2_alt"; transcript_id "HERVH48_4_GL000257v2_alt"; locus "HERVH48_4_GL000257v2_alt"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0058"; model_cov "5449"; model_pct "81.9"; chr4_GL000257v2_alt rmsk exon 248097 248500 2919 + . gene_id "HERVH48_4_GL000257v2_alt"; transcript_id "HERVH48_4_GL000257v2_alt"; locus "HERVH48_4_GL000257v2_alt"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0058"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "0"; repStart "4"; chr4_GL000257v2_alt rmsk exon 248501 253827 34045 + . gene_id "HERVH48_4_GL000257v2_alt"; transcript_id "HERVH48_4_GL000257v2_alt"; locus "HERVH48_4_GL000257v2_alt"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0058"; repClass "LTR"; repEnd "5450"; repFamily "ERV1"; repLeft "-1204"; repStart "1"; ### MER61_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 311161 313089 . - . gene_id "MER61_4_GL000257v2_alt"; transcript_id "MER61_4_GL000257v2_alt"; locus "MER61_4_GL000257v2_alt"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0456"; model_cov "1026"; model_pct "19.7"; chr4_GL000257v2_alt rmsk exon 311161 311453 1143 - . gene_id "MER61_4_GL000257v2_alt"; transcript_id "MER61_4_GL000257v2_alt"; locus "MER61_4_GL000257v2_alt"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0456"; repClass "LTR"; repEnd "336"; repFamily "ERV1"; repLeft "2"; repStart "-5"; chr4_GL000257v2_alt rmsk exon 311455 312432 3963 - . gene_id "MER61_4_GL000257v2_alt"; transcript_id "MER61_4_GL000257v2_alt"; locus "MER61_4_GL000257v2_alt"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0456"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4191"; repStart "0"; chr4_GL000257v2_alt rmsk exon 312777 313089 1518 - . gene_id "MER61_4_GL000257v2_alt"; transcript_id "MER61_4_GL000257v2_alt"; locus "MER61_4_GL000257v2_alt"; repName "MER61A"; geneRegion "ltr"; locid "MER61-int_0456"; repClass "LTR"; repEnd "309"; repFamily "ERV1"; repLeft "1"; repStart "-32"; ### HML6_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 320605 327257 . - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0126"; model_cov "5018"; model_pct "69.7"; chr4_GL000257v2_alt rmsk exon 320605 321030 2362 - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0126"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "-5"; chr4_GL000257v2_alt rmsk exon 321033 322487 6463 - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0126"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "5742"; repStart "-2"; chr4_GL000257v2_alt rmsk exon 323334 326310 16801 - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0126"; repClass "LTR"; repEnd "5747"; repFamily "ERVK"; repLeft "2723"; repStart "-1455"; chr4_GL000257v2_alt rmsk exon 326319 326815 2818 - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0126"; repClass "LTR"; repEnd "564"; repFamily "ERVK"; repLeft "28"; repStart "-6638"; chr4_GL000257v2_alt rmsk exon 326839 327257 2084 - . gene_id "HML6_4_GL000257v2_alt"; transcript_id "HML6_4_GL000257v2_alt"; locus "HML6_4_GL000257v2_alt"; repName "LTR3B"; geneRegion "ltr"; locid "HERVK3-int_0126"; repClass "LTR"; repEnd "437"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV30_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 377329 381700 . + . gene_id "HERV30_4_GL000257v2_alt"; transcript_id "HERV30_4_GL000257v2_alt"; locus "HERV30_4_GL000257v2_alt"; category "oneside"; intModel "HERV30-int"; locid "HERV30-int_0031"; model_cov "3687"; model_pct "44.7"; chr4_GL000257v2_alt rmsk exon 377329 380097 20761 + . gene_id "HERV30_4_GL000257v2_alt"; transcript_id "HERV30_4_GL000257v2_alt"; locus "HERV30_4_GL000257v2_alt"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0031"; repClass "LTR"; repEnd "3462"; repFamily "ERV1"; repLeft "-4795"; repStart "688"; chr4_GL000257v2_alt rmsk exon 380091 380995 6234 + . gene_id "HERV30_4_GL000257v2_alt"; transcript_id "HERV30_4_GL000257v2_alt"; locus "HERV30_4_GL000257v2_alt"; repName "HERV30-int"; geneRegion "internal"; locid "HERV30-int_0031"; repClass "LTR"; repEnd "8257"; repFamily "ERV1"; repLeft "0"; repStart "7344"; chr4_GL000257v2_alt rmsk exon 380997 381700 5016 + . gene_id "HERV30_4_GL000257v2_alt"; transcript_id "HERV30_4_GL000257v2_alt"; locus "HERV30_4_GL000257v2_alt"; repName "LTR30"; geneRegion "ltr"; locid "HERV30-int_0031"; repClass "LTR"; repEnd "722"; repFamily "ERV1"; repLeft "0"; repStart "4"; ### MER4B_4_GL000257v2_alt(a) ### chr4_GL000257v2_alt rmsk gene 440360 450812 . + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0585"; model_cov "6264"; model_pct "92.7"; chr4_GL000257v2_alt rmsk exon 440360 440475 638 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "623"; repFamily "ERV1"; repLeft "-6135"; repStart "510"; chr4_GL000257v2_alt rmsk exon 441673 441931 1058 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "861"; repFamily "ERV1"; repLeft "-5897"; repStart "608"; chr4_GL000257v2_alt rmsk exon 443526 445221 26354 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "-4131"; repStart "855"; chr4_GL000257v2_alt rmsk exon 445709 446091 26354 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "3009"; repFamily "ERV1"; repLeft "-3749"; repStart "2628"; chr4_GL000257v2_alt rmsk exon 446307 446429 26354 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "3071"; repFamily "ERV1"; repLeft "-3687"; repStart "3010"; chr4_GL000257v2_alt rmsk exon 446595 446944 26354 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "3416"; repFamily "ERV1"; repLeft "-3342"; repStart "3072"; chr4_GL000257v2_alt rmsk exon 447002 450256 26354 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "6757"; repFamily "ERV1"; repLeft "-1"; repStart "3417"; chr4_GL000257v2_alt rmsk exon 450257 450470 1011 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "505"; repFamily "ERV1"; repLeft "-395"; repStart "291"; chr4_GL000257v2_alt rmsk exon 450487 450812 1649 + . gene_id "MER4B_4_GL000257v2_alt(a)"; transcript_id "MER4B_4_GL000257v2_alt(a)"; locus "MER4B_4_GL000257v2_alt(a)"; repName "MER4D1"; geneRegion "ltr"; locid "MER4B-int_0585"; repClass "LTR"; repEnd "897"; repFamily "ERV1"; repLeft "-3"; repStart "564"; ### ERVLB4_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 462755 465267 . - . gene_id "ERVLB4_4_GL000257v2_alt"; transcript_id "ERVLB4_4_GL000257v2_alt"; locus "ERVLB4_4_GL000257v2_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1973"; model_cov "1950"; model_pct "34.1"; chr4_GL000257v2_alt rmsk exon 462755 463604 4529 - . gene_id "ERVLB4_4_GL000257v2_alt"; transcript_id "ERVLB4_4_GL000257v2_alt"; locus "ERVLB4_4_GL000257v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1973"; repClass "LTR"; repEnd "4692"; repFamily "ERVL"; repLeft "3837"; repStart "-1022"; chr4_GL000257v2_alt rmsk exon 463612 464711 4494 - . gene_id "ERVLB4_4_GL000257v2_alt"; transcript_id "ERVLB4_4_GL000257v2_alt"; locus "ERVLB4_4_GL000257v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1973"; repClass "LTR"; repEnd "1096"; repFamily "ERVL"; repLeft "1"; repStart "-4618"; chr4_GL000257v2_alt rmsk exon 464712 465267 1912 - . gene_id "ERVLB4_4_GL000257v2_alt"; transcript_id "ERVLB4_4_GL000257v2_alt"; locus "ERVLB4_4_GL000257v2_alt"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_1973"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "11"; repStart "0"; ### HERV3_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 477064 483816 . - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0104"; model_cov "7356"; model_pct "87.3"; chr4_GL000257v2_alt rmsk exon 477064 481055 22905 - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0104"; repClass "LTR"; repEnd "6223"; repFamily "ERV1"; repLeft "1046"; repStart "-2203"; chr4_GL000257v2_alt rmsk exon 481095 481240 642 - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0104"; repClass "LTR"; repEnd "1119"; repFamily "ERV1"; repLeft "936"; repStart "-7307"; chr4_GL000257v2_alt rmsk exon 481217 481769 1649 - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0104"; repClass "LTR"; repEnd "2322"; repFamily "ERV1"; repLeft "1709"; repStart "-6104"; chr4_GL000257v2_alt rmsk exon 481765 483125 4059 - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0104"; repClass "LTR"; repEnd "1387"; repFamily "ERV1"; repLeft "4"; repStart "-7039"; chr4_GL000257v2_alt rmsk exon 483129 483816 4143 - . gene_id "HERV3_4_GL000257v2_alt"; transcript_id "HERV3_4_GL000257v2_alt"; locus "HERV3_4_GL000257v2_alt"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0104"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER4B_4_GL000257v2_alt(b) ### chr4_GL000257v2_alt rmsk gene 528963 538959 . + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0587"; model_cov "5552"; model_pct "82.2"; chr4_GL000257v2_alt rmsk exon 528963 529586 2576 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B"; geneRegion "ltr"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "574"; repFamily "ERV1"; repLeft "-36"; repStart "1"; chr4_GL000257v2_alt rmsk exon 529618 530219 3034 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "612"; repFamily "ERV1"; repLeft "-6146"; repStart "1"; chr4_GL000257v2_alt rmsk exon 531437 531670 1036 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "845"; repFamily "ERV1"; repLeft "-5913"; repStart "608"; chr4_GL000257v2_alt rmsk exon 533320 533566 6403 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "1271"; repFamily "ERV1"; repLeft "-5487"; repStart "855"; chr4_GL000257v2_alt rmsk exon 534209 535007 6403 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "2627"; repFamily "ERV1"; repLeft "-4131"; repStart "1272"; chr4_GL000257v2_alt rmsk exon 535498 535858 6403 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "2983"; repFamily "ERV1"; repLeft "-3775"; repStart "2628"; chr4_GL000257v2_alt rmsk exon 536209 536559 5440 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "3416"; repFamily "ERV1"; repLeft "-3342"; repStart "3071"; chr4_GL000257v2_alt rmsk exon 536597 537164 5440 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "4002"; repFamily "ERV1"; repLeft "-2756"; repStart "3417"; chr4_GL000257v2_alt rmsk exon 537167 537547 1839 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "4624"; repFamily "ERV1"; repLeft "-2134"; repStart "4241"; chr4_GL000257v2_alt rmsk exon 537566 538959 4894 + . gene_id "MER4B_4_GL000257v2_alt(b)"; transcript_id "MER4B_4_GL000257v2_alt(b)"; locus "MER4B_4_GL000257v2_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0587"; repClass "LTR"; repEnd "6336"; repFamily "ERV1"; repLeft "-422"; repStart "5071"; ### LTR57_4_GL000257v2_alt ### chr4_GL000257v2_alt rmsk gene 533567 534208 . + . gene_id "LTR57_4_GL000257v2_alt"; transcript_id "LTR57_4_GL000257v2_alt"; locus "LTR57_4_GL000257v2_alt"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0208"; model_cov "645"; model_pct "12.1"; chr4_GL000257v2_alt rmsk exon 533567 534208 1734 + . gene_id "LTR57_4_GL000257v2_alt"; transcript_id "LTR57_4_GL000257v2_alt"; locus "LTR57_4_GL000257v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0208"; repClass "LTR"; repEnd "1458"; repFamily "ERVL"; repLeft "-3885"; repStart "813"; ### PRIMA4_4_GL383527v1_alt ### chr4_GL383527v1_alt rmsk gene 8733 9696 . + . gene_id "PRIMA4_4_GL383527v1_alt"; transcript_id "PRIMA4_4_GL383527v1_alt"; locus "PRIMA4_4_GL383527v1_alt"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0269"; model_cov "1009"; model_pct "12.2"; chr4_GL383527v1_alt rmsk exon 8733 9696 3609 + . gene_id "PRIMA4_4_GL383527v1_alt"; transcript_id "PRIMA4_4_GL383527v1_alt"; locus "PRIMA4_4_GL383527v1_alt"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0269"; repClass "LTR"; repEnd "1010"; repFamily "ERV1"; repLeft "-7260"; repStart "1"; ### MER4_4_GL383527v1_alt ### chr4_GL383527v1_alt rmsk gene 9772 15167 . + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1012"; model_cov "6135"; model_pct "93.0"; chr4_GL383527v1_alt rmsk exon 9772 9827 350 + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1012"; repClass "LTR"; repEnd "892"; repFamily "ERV1"; repLeft "-5706"; repStart "836"; chr4_GL383527v1_alt rmsk exon 9804 11054 15735 + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1012"; repClass "LTR"; repEnd "2750"; repFamily "ERV1"; repLeft "-3848"; repStart "503"; chr4_GL383527v1_alt rmsk exon 11282 12062 15735 + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1012"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "-2441"; repStart "2751"; chr4_GL383527v1_alt rmsk exon 12373 14736 15735 + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1012"; repClass "LTR"; repEnd "6584"; repFamily "ERV1"; repLeft "-14"; repStart "4158"; chr4_GL383527v1_alt rmsk exon 14798 15167 2179 + . gene_id "MER4_4_GL383527v1_alt"; transcript_id "MER4_4_GL383527v1_alt"; locus "MER4_4_GL383527v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1012"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "-40"; ### MER61_4_GL383527v1_alt ### chr4_GL383527v1_alt rmsk gene 36571 42913 . - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; category "prototype"; intModel "MER61-int"; locid "MER61-int_0459"; model_cov "7416"; model_pct "100.0"; chr4_GL383527v1_alt rmsk exon 36571 36962 2566 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0459"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "1"; repStart "-29"; chr4_GL383527v1_alt rmsk exon 36963 37568 3890 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0459"; repClass "LTR"; repEnd "5217"; repFamily "ERV1"; repLeft "4579"; repStart "0"; chr4_GL383527v1_alt rmsk exon 37882 41370 12155 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0459"; repClass "LTR"; repEnd "4928"; repFamily "ERV1"; repLeft "-1012"; repStart "-289"; chr4_GL383527v1_alt rmsk exon 41372 41606 3291 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0459"; repClass "LTR"; repEnd "840"; repFamily "ERV1"; repLeft "603"; repStart "-4377"; chr4_GL383527v1_alt rmsk exon 41911 42538 3291 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61-int"; geneRegion "internal"; locid "MER61-int_0459"; repClass "LTR"; repEnd "602"; repFamily "ERV1"; repLeft "1"; repStart "-4615"; chr4_GL383527v1_alt rmsk exon 42550 42913 2156 - . gene_id "MER61_4_GL383527v1_alt"; transcript_id "MER61_4_GL383527v1_alt"; locus "MER61_4_GL383527v1_alt"; repName "MER61B"; geneRegion "ltr"; locid "MER61-int_0459"; repClass "LTR"; repEnd "398"; repFamily "ERV1"; repLeft "28"; repStart "-29"; ### HERVL_4_GL383527v1_alt ### chr4_GL383527v1_alt rmsk gene 86156 87361 . - . gene_id "HERVL_4_GL383527v1_alt"; transcript_id "HERVL_4_GL383527v1_alt"; locus "HERVL_4_GL383527v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1460"; model_cov "676"; model_pct "12.0"; chr4_GL383527v1_alt rmsk exon 86156 86677 2314 - . gene_id "HERVL_4_GL383527v1_alt"; transcript_id "HERVL_4_GL383527v1_alt"; locus "HERVL_4_GL383527v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1460"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr4_GL383527v1_alt rmsk exon 86679 87361 4840 - . gene_id "HERVL_4_GL383527v1_alt"; transcript_id "HERVL_4_GL383527v1_alt"; locus "HERVL_4_GL383527v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1460"; repClass "LTR"; repEnd "5646"; repFamily "ERVL"; repLeft "4970"; repStart "-8"; ### ERVLE_4_GL383528v1_alt ### chr4_GL383528v1_alt rmsk gene 26211 27524 . + . gene_id "ERVLE_4_GL383528v1_alt"; transcript_id "ERVLE_4_GL383528v1_alt"; locus "ERVLE_4_GL383528v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3797"; model_cov "656"; model_pct "11.6"; chr4_GL383528v1_alt rmsk exon 26211 26377 281 + . gene_id "ERVLE_4_GL383528v1_alt"; transcript_id "ERVLE_4_GL383528v1_alt"; locus "ERVLE_4_GL383528v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3797"; repClass "LTR"; repEnd "549"; repFamily "ERVL"; repLeft "-5118"; repStart "377"; chr4_GL383528v1_alt rmsk exon 26700 26887 399 + . gene_id "ERVLE_4_GL383528v1_alt"; transcript_id "ERVLE_4_GL383528v1_alt"; locus "ERVLE_4_GL383528v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3797"; repClass "LTR"; repEnd "1211"; repFamily "ERVL"; repLeft "-4456"; repStart "1030"; chr4_GL383528v1_alt rmsk exon 27220 27524 437 + . gene_id "ERVLE_4_GL383528v1_alt"; transcript_id "ERVLE_4_GL383528v1_alt"; locus "ERVLE_4_GL383528v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3797"; repClass "LTR"; repEnd "1690"; repFamily "ERVL"; repLeft "-3977"; repStart "1387"; ### ERVL_4_GL383528v1_alt(a) ### chr4_GL383528v1_alt rmsk gene 27930 29176 . + . gene_id "ERVL_4_GL383528v1_alt(a)"; transcript_id "ERVL_4_GL383528v1_alt(a)"; locus "ERVL_4_GL383528v1_alt(a)"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0517"; model_cov "954"; model_pct "16.6"; chr4_GL383528v1_alt rmsk exon 27930 28167 354 + . gene_id "ERVL_4_GL383528v1_alt(a)"; transcript_id "ERVL_4_GL383528v1_alt(a)"; locus "ERVL_4_GL383528v1_alt(a)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0517"; repClass "LTR"; repEnd "4311"; repFamily "ERVL"; repLeft "-1446"; repStart "4072"; chr4_GL383528v1_alt rmsk exon 28478 29176 345 + . gene_id "ERVL_4_GL383528v1_alt(a)"; transcript_id "ERVL_4_GL383528v1_alt(a)"; locus "ERVL_4_GL383528v1_alt(a)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0517"; repClass "LTR"; repEnd "5463"; repFamily "ERVL"; repLeft "-294"; repStart "4748"; ### ERVL_4_GL383528v1_alt(b) ### chr4_GL383528v1_alt rmsk gene 184458 189708 . - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; category "prototype"; intModel "ERVL-int"; locid "ERVL-int_0518"; model_cov "3225"; model_pct "56.0"; chr4_GL383528v1_alt rmsk exon 184458 184913 2419 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "2"; repStart "-60"; chr4_GL383528v1_alt rmsk exon 185011 187016 16115 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "3347"; repFamily "ERVL"; repLeft "1308"; repStart "-2410"; chr4_GL383528v1_alt rmsk exon 187307 188067 16115 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "1307"; repFamily "ERVL"; repLeft "602"; repStart "-4450"; chr4_GL383528v1_alt rmsk exon 188488 188688 16115 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "601"; repFamily "ERVL"; repLeft "416"; repStart "-5156"; chr4_GL383528v1_alt rmsk exon 188916 189188 16115 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "415"; repFamily "ERVL"; repLeft "119"; repStart "-5342"; chr4_GL383528v1_alt rmsk exon 189312 189476 437 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "512"; repFamily "ERVL"; repLeft "350"; repStart "-8"; chr4_GL383528v1_alt rmsk exon 189500 189708 1185 - . gene_id "ERVL_4_GL383528v1_alt(b)"; transcript_id "ERVL_4_GL383528v1_alt(b)"; locus "ERVL_4_GL383528v1_alt(b)"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0518"; repClass "LTR"; repEnd "210"; repFamily "ERVL"; repLeft "1"; repStart "-310"; ### ERVLE_4_KI270788v1_alt ### chr4_KI270788v1_alt rmsk gene 129099 131119 . + . gene_id "ERVLE_4_KI270788v1_alt"; transcript_id "ERVLE_4_KI270788v1_alt"; locus "ERVLE_4_KI270788v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3798"; model_cov "1641"; model_pct "29.0"; chr4_KI270788v1_alt rmsk exon 129099 130184 1481 + . gene_id "ERVLE_4_KI270788v1_alt"; transcript_id "ERVLE_4_KI270788v1_alt"; locus "ERVLE_4_KI270788v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3798"; repClass "LTR"; repEnd "1142"; repFamily "ERVL"; repLeft "-4525"; repStart "8"; chr4_KI270788v1_alt rmsk exon 130624 131119 1060 + . gene_id "ERVLE_4_KI270788v1_alt"; transcript_id "ERVLE_4_KI270788v1_alt"; locus "ERVLE_4_KI270788v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3798"; repClass "LTR"; repEnd "1721"; repFamily "ERVL"; repLeft "-3946"; repStart "1214"; ### ERVLB4_4_KI270790v1_alt ### chr4_KI270790v1_alt rmsk gene 125600 129792 . + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; category "opposite*"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1975"; model_cov "2891"; model_pct "50.6"; chr4_KI270790v1_alt rmsk exon 125600 125872 1408 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1975"; prev_strand "-"; repClass "LTR"; repEnd "2170"; repFamily "ERVL"; repLeft "1863"; repStart "-3544"; chr4_KI270790v1_alt rmsk exon 125872 126424 3330 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1975"; prev_strand "-"; repClass "LTR"; repEnd "1709"; repFamily "ERVL"; repLeft "1147"; repStart "-4005"; chr4_KI270790v1_alt rmsk exon 126453 126516 3330 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1975"; prev_strand "-"; repClass "LTR"; repEnd "1146"; repFamily "ERVL"; repLeft "1068"; repStart "-4568"; chr4_KI270790v1_alt rmsk exon 126516 128151 9370 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1975"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-1058"; repStart "2958"; chr4_KI270790v1_alt rmsk exon 128151 129322 6211 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1975"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "4521"; chr4_KI270790v1_alt rmsk exon 129325 129676 1786 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1975"; repClass "LTR"; repEnd "372"; repFamily "ERVL"; repLeft "-42"; repStart "-142"; chr4_KI270790v1_alt rmsk exon 129779 129792 555 + . gene_id "ERVLB4_4_KI270790v1_alt"; transcript_id "ERVLB4_4_KI270790v1_alt"; locus "ERVLB4_4_KI270790v1_alt"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_1975"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-28"; repStart "373"; ### HERVH_4_KI270896v1_alt ### chr4_KI270896v1_alt rmsk gene 263431 269385 . + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1326"; model_cov "5200"; model_pct "67.4"; chr4_KI270896v1_alt rmsk exon 263431 263822 2457 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr4_KI270896v1_alt rmsk exon 263825 266786 18948 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr4_KI270896v1_alt rmsk exon 266781 267634 5902 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3140"; chr4_KI270896v1_alt rmsk exon 267637 267819 1268 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "4670"; repFamily "ERV1"; repLeft "-3043"; repStart "4488"; chr4_KI270896v1_alt rmsk exon 267817 268389 3469 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4575"; chr4_KI270896v1_alt rmsk exon 268394 268609 1221 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr4_KI270896v1_alt rmsk exon 268610 268987 2339 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7324"; chr4_KI270896v1_alt rmsk exon 268988 269385 2260 + . gene_id "HERVH_4_KI270896v1_alt"; transcript_id "HERVH_4_KI270896v1_alt"; locus "HERVH_4_KI270896v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1326"; repClass "LTR"; repEnd "442"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### PRIMA41_4_KI270896v1_alt ### chr4_KI270896v1_alt rmsk gene 322535 327345 . - . gene_id "PRIMA41_4_KI270896v1_alt"; transcript_id "PRIMA41_4_KI270896v1_alt"; locus "PRIMA41_4_KI270896v1_alt"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0187"; model_cov "4263"; model_pct "55.0"; chr4_KI270896v1_alt rmsk exon 322535 324116 10684 - . gene_id "PRIMA41_4_KI270896v1_alt"; transcript_id "PRIMA41_4_KI270896v1_alt"; locus "PRIMA41_4_KI270896v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0187"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4514"; repStart "-1593"; chr4_KI270896v1_alt rmsk exon 324768 327345 10684 - . gene_id "PRIMA41_4_KI270896v1_alt"; transcript_id "PRIMA41_4_KI270896v1_alt"; locus "PRIMA41_4_KI270896v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0187"; repClass "LTR"; repEnd "4517"; repFamily "ERV1"; repLeft "1903"; repStart "-3239"; ### HERVH_4_KI270925v1_alt ### chr4_KI270925v1_alt rmsk gene 117682 123546 . - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1327"; model_cov "4932"; model_pct "63.9"; chr4_KI270925v1_alt rmsk exon 117682 118132 3524 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr4_KI270925v1_alt rmsk exon 118133 118415 2090 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7429"; repStart "0"; chr4_KI270925v1_alt rmsk exon 118447 118596 1000 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "5748"; repFamily "ERV1"; repLeft "5600"; repStart "-1965"; chr4_KI270925v1_alt rmsk exon 118598 119204 2823 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr4_KI270925v1_alt rmsk exon 119207 119946 2835 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3140"; repStart "-3720"; chr4_KI270925v1_alt rmsk exon 119941 123096 16170 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr4_KI270925v1_alt rmsk exon 123099 123546 3625 - . gene_id "HERVH_4_KI270925v1_alt"; transcript_id "HERVH_4_KI270925v1_alt"; locus "HERVH_4_KI270925v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1327"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVL32_4_KI270925v1_alt(a) ### chr4_KI270925v1_alt rmsk gene 247026 248772 . + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0057"; model_cov "1139"; model_pct "33.3"; chr4_KI270925v1_alt rmsk exon 247026 247088 247 + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0057"; repClass "LTR"; repEnd "66"; repFamily "ERVL"; repLeft "-391"; repStart "1"; chr4_KI270925v1_alt rmsk exon 247089 247272 898 + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0057"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "-1"; repStart "271"; chr4_KI270925v1_alt rmsk exon 247282 247380 354 + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0057"; repClass "LTR"; repEnd "110"; repFamily "ERVL"; repLeft "-3308"; repStart "12"; chr4_KI270925v1_alt rmsk exon 247651 248333 2136 + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0057"; repClass "LTR"; repEnd "721"; repFamily "ERVL"; repLeft "-2697"; repStart "52"; chr4_KI270925v1_alt rmsk exon 248398 248772 1117 + . gene_id "HERVL32_4_KI270925v1_alt(a)"; transcript_id "HERVL32_4_KI270925v1_alt(a)"; locus "HERVL32_4_KI270925v1_alt(a)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0057"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-2380"; repStart "666"; ### HERVL32_4_KI270925v1_alt(b) ### chr4_KI270925v1_alt rmsk gene 248879 250158 . + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0059"; model_cov "829"; model_pct "24.3"; chr4_KI270925v1_alt rmsk exon 248879 248962 430 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "1038"; repFamily "ERVL"; repLeft "-2380"; repStart "955"; chr4_KI270925v1_alt rmsk exon 248974 249325 658 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "1311"; repFamily "ERVL"; repLeft "-2107"; repStart "955"; chr4_KI270925v1_alt rmsk exon 249435 249594 418 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "2549"; repFamily "ERVL"; repLeft "-869"; repStart "2351"; chr4_KI270925v1_alt rmsk exon 249719 249897 477 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "3414"; repFamily "ERVL"; repLeft "-4"; repStart "3222"; chr4_KI270925v1_alt rmsk exon 249905 249958 318 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "50"; repFamily "ERVL"; repLeft "-407"; repStart "2"; chr4_KI270925v1_alt rmsk exon 249973 250158 1012 + . gene_id "HERVL32_4_KI270925v1_alt(b)"; transcript_id "HERVL32_4_KI270925v1_alt(b)"; locus "HERVL32_4_KI270925v1_alt(b)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0059"; repClass "LTR"; repEnd "452"; repFamily "ERVL"; repLeft "-5"; repStart "271"; ### LTR23_5_GL339449v2_alt ### chr5_GL339449v2_alt rmsk gene 744520 746337 . - . gene_id "LTR23_5_GL339449v2_alt"; transcript_id "LTR23_5_GL339449v2_alt"; locus "LTR23_5_GL339449v2_alt"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0088"; model_cov "1682"; model_pct "32.8"; chr5_GL339449v2_alt rmsk exon 744520 746337 1310 - . gene_id "LTR23_5_GL339449v2_alt"; transcript_id "LTR23_5_GL339449v2_alt"; locus "LTR23_5_GL339449v2_alt"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0088"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "891"; repStart "-2550"; ### HML6_5_GL339449v2_alt(a) ### chr5_GL339449v2_alt rmsk gene 790326 792272 . - . gene_id "HML6_5_GL339449v2_alt(a)"; transcript_id "HML6_5_GL339449v2_alt(a)"; locus "HML6_5_GL339449v2_alt(a)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0129"; model_cov "1240"; model_pct "17.2"; chr5_GL339449v2_alt rmsk exon 790326 790460 715 - . gene_id "HML6_5_GL339449v2_alt(a)"; transcript_id "HML6_5_GL339449v2_alt(a)"; locus "HML6_5_GL339449v2_alt(a)"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0129"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "317"; repStart "-46"; chr5_GL339449v2_alt rmsk exon 790461 791810 4578 - . gene_id "HML6_5_GL339449v2_alt(a)"; transcript_id "HML6_5_GL339449v2_alt(a)"; locus "HML6_5_GL339449v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0129"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "1280"; repStart "-4967"; chr5_GL339449v2_alt rmsk exon 791953 792153 577 - . gene_id "HML6_5_GL339449v2_alt(a)"; transcript_id "HML6_5_GL339449v2_alt(a)"; locus "HML6_5_GL339449v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0129"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "15"; repStart "-6970"; chr5_GL339449v2_alt rmsk exon 792218 792272 267 - . gene_id "HML6_5_GL339449v2_alt(a)"; transcript_id "HML6_5_GL339449v2_alt(a)"; locus "HML6_5_GL339449v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0129"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "110"; repStart "-7024"; ### HML6_5_GL339449v2_alt(b) ### chr5_GL339449v2_alt rmsk gene 1343442 1345388 . + . gene_id "HML6_5_GL339449v2_alt(b)"; transcript_id "HML6_5_GL339449v2_alt(b)"; locus "HML6_5_GL339449v2_alt(b)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0130"; model_cov "1240"; model_pct "17.2"; chr5_GL339449v2_alt rmsk exon 1343442 1343496 267 + . gene_id "HML6_5_GL339449v2_alt(b)"; transcript_id "HML6_5_GL339449v2_alt(b)"; locus "HML6_5_GL339449v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0130"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "-7024"; repStart "110"; chr5_GL339449v2_alt rmsk exon 1343561 1343761 596 + . gene_id "HML6_5_GL339449v2_alt(b)"; transcript_id "HML6_5_GL339449v2_alt(b)"; locus "HML6_5_GL339449v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0130"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr5_GL339449v2_alt rmsk exon 1343904 1345253 4558 + . gene_id "HML6_5_GL339449v2_alt(b)"; transcript_id "HML6_5_GL339449v2_alt(b)"; locus "HML6_5_GL339449v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0130"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; chr5_GL339449v2_alt rmsk exon 1345254 1345388 715 + . gene_id "HML6_5_GL339449v2_alt(b)"; transcript_id "HML6_5_GL339449v2_alt(b)"; locus "HML6_5_GL339449v2_alt(b)"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0130"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "-46"; repStart "317"; ### ERVLE_5_GL339449v2_alt ### chr5_GL339449v2_alt rmsk gene 1566661 1569182 . - . gene_id "ERVLE_5_GL339449v2_alt"; transcript_id "ERVLE_5_GL339449v2_alt"; locus "ERVLE_5_GL339449v2_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3801"; model_cov "1259"; model_pct "22.2"; chr5_GL339449v2_alt rmsk exon 1566661 1566776 252 - . gene_id "ERVLE_5_GL339449v2_alt"; transcript_id "ERVLE_5_GL339449v2_alt"; locus "ERVLE_5_GL339449v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3801"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "3090"; repStart "-2456"; chr5_GL339449v2_alt rmsk exon 1567127 1567556 791 - . gene_id "ERVLE_5_GL339449v2_alt"; transcript_id "ERVLE_5_GL339449v2_alt"; locus "ERVLE_5_GL339449v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3801"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "2456"; repStart "-2768"; chr5_GL339449v2_alt rmsk exon 1568446 1569182 1247 - . gene_id "ERVLE_5_GL339449v2_alt"; transcript_id "ERVLE_5_GL339449v2_alt"; locus "ERVLE_5_GL339449v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3801"; repClass "LTR"; repEnd "2553"; repFamily "ERVL"; repLeft "1858"; repStart "-3114"; ### HML6_5_GL339449v2_alt(c) ### chr5_GL339449v2_alt rmsk gene 1570382 1576886 . + . gene_id "HML6_5_GL339449v2_alt(c)"; transcript_id "HML6_5_GL339449v2_alt(c)"; locus "HML6_5_GL339449v2_alt(c)"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0131"; model_cov "7198"; model_pct "99.9"; chr5_GL339449v2_alt rmsk exon 1570382 1570863 3381 + . gene_id "HML6_5_GL339449v2_alt(c)"; transcript_id "HML6_5_GL339449v2_alt(c)"; locus "HML6_5_GL339449v2_alt(c)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0131"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5_GL339449v2_alt rmsk exon 1570864 1571431 22968 + . gene_id "HML6_5_GL339449v2_alt(c)"; transcript_id "HML6_5_GL339449v2_alt(c)"; locus "HML6_5_GL339449v2_alt(c)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0131"; repClass "LTR"; repEnd "590"; repFamily "ERVK"; repLeft "-6612"; repStart "1"; chr5_GL339449v2_alt rmsk exon 1571741 1576403 22968 + . gene_id "HML6_5_GL339449v2_alt(c)"; transcript_id "HML6_5_GL339449v2_alt(c)"; locus "HML6_5_GL339449v2_alt(c)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0131"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "591"; chr5_GL339449v2_alt rmsk exon 1576406 1576886 3478 + . gene_id "HML6_5_GL339449v2_alt(c)"; transcript_id "HML6_5_GL339449v2_alt(c)"; locus "HML6_5_GL339449v2_alt(c)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0131"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLB4_5_GL949742v1_alt ### chr5_GL949742v1_alt rmsk gene 49682 55130 . - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1976"; model_cov "3611"; model_pct "63.2"; chr5_GL949742v1_alt rmsk exon 49682 51629 5352 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "3761"; repFamily "ERVL"; repLeft "1831"; repStart "-1953"; chr5_GL949742v1_alt rmsk exon 51627 52138 1502 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "1718"; repFamily "ERVL"; repLeft "1201"; repStart "-3996"; chr5_GL949742v1_alt rmsk exon 52613 52925 3164 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "1168"; repFamily "ERVL"; repLeft "831"; repStart "-4546"; chr5_GL949742v1_alt rmsk exon 53294 53771 3164 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "830"; repFamily "ERVL"; repLeft "300"; repStart "-4884"; chr5_GL949742v1_alt rmsk exon 54091 54374 3164 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "299"; repFamily "ERVL"; repLeft "23"; repStart "-5415"; chr5_GL949742v1_alt rmsk exon 54723 54745 3164 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "22"; repFamily "ERVL"; repLeft "1"; repStart "-5692"; chr5_GL949742v1_alt rmsk exon 54746 55130 893 - . gene_id "ERVLB4_5_GL949742v1_alt"; transcript_id "ERVLB4_5_GL949742v1_alt"; locus "ERVLB4_5_GL949742v1_alt"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1976"; repClass "LTR"; repEnd "397"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_5_GL949742v1_alt ### chr5_GL949742v1_alt rmsk gene 200972 201941 . - . gene_id "ERVLE_5_GL949742v1_alt"; transcript_id "ERVLE_5_GL949742v1_alt"; locus "ERVLE_5_GL949742v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3803"; model_cov "970"; model_pct "17.1"; chr5_GL949742v1_alt rmsk exon 200972 201941 1323 - . gene_id "ERVLE_5_GL949742v1_alt"; transcript_id "ERVLE_5_GL949742v1_alt"; locus "ERVLE_5_GL949742v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3803"; repClass "LTR"; repEnd "2883"; repFamily "ERVL"; repLeft "1913"; repStart "-2784"; ### ERVLE_5_KI270791v1_alt(a) ### chr5_KI270791v1_alt rmsk gene 51045 52673 . - . gene_id "ERVLE_5_KI270791v1_alt(a)"; transcript_id "ERVLE_5_KI270791v1_alt(a)"; locus "ERVLE_5_KI270791v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3804"; model_cov "1294"; model_pct "22.8"; chr5_KI270791v1_alt rmsk exon 51045 51293 545 - . gene_id "ERVLE_5_KI270791v1_alt(a)"; transcript_id "ERVLE_5_KI270791v1_alt(a)"; locus "ERVLE_5_KI270791v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3804"; repClass "LTR"; repEnd "5342"; repFamily "ERVL"; repLeft "5099"; repStart "-325"; chr5_KI270791v1_alt rmsk exon 51356 51568 519 - . gene_id "ERVLE_5_KI270791v1_alt(a)"; transcript_id "ERVLE_5_KI270791v1_alt(a)"; locus "ERVLE_5_KI270791v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3804"; repClass "LTR"; repEnd "4961"; repFamily "ERVL"; repLeft "4745"; repStart "-706"; chr5_KI270791v1_alt rmsk exon 51986 52673 1250 - . gene_id "ERVLE_5_KI270791v1_alt(a)"; transcript_id "ERVLE_5_KI270791v1_alt(a)"; locus "ERVLE_5_KI270791v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3804"; repClass "LTR"; repEnd "4738"; repFamily "ERVL"; repLeft "3903"; repStart "-929"; ### ERVLE_5_KI270791v1_alt(b) ### chr5_KI270791v1_alt rmsk gene 59671 61088 . - . gene_id "ERVLE_5_KI270791v1_alt(b)"; transcript_id "ERVLE_5_KI270791v1_alt(b)"; locus "ERVLE_5_KI270791v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3805"; model_cov "972"; model_pct "17.2"; chr5_KI270791v1_alt rmsk exon 59671 59846 474 - . gene_id "ERVLE_5_KI270791v1_alt(b)"; transcript_id "ERVLE_5_KI270791v1_alt(b)"; locus "ERVLE_5_KI270791v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3805"; repClass "LTR"; repEnd "3848"; repFamily "ERVL"; repLeft "3661"; repStart "-1819"; chr5_KI270791v1_alt rmsk exon 60021 60169 388 - . gene_id "ERVLE_5_KI270791v1_alt(b)"; transcript_id "ERVLE_5_KI270791v1_alt(b)"; locus "ERVLE_5_KI270791v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3805"; repClass "LTR"; repEnd "3456"; repFamily "ERVL"; repLeft "3294"; repStart "-2211"; chr5_KI270791v1_alt rmsk exon 60274 60332 1490 - . gene_id "ERVLE_5_KI270791v1_alt(b)"; transcript_id "ERVLE_5_KI270791v1_alt(b)"; locus "ERVLE_5_KI270791v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3805"; repClass "LTR"; repEnd "3134"; repFamily "ERVL"; repLeft "3076"; repStart "-2533"; chr5_KI270791v1_alt rmsk exon 60529 61088 1490 - . gene_id "ERVLE_5_KI270791v1_alt(b)"; transcript_id "ERVLE_5_KI270791v1_alt(b)"; locus "ERVLE_5_KI270791v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3805"; repClass "LTR"; repEnd "3075"; repFamily "ERVL"; repLeft "2510"; repStart "-2592"; ### ERVLE_5_KI270794v1_alt ### chr5_KI270794v1_alt rmsk gene 124661 126505 . - . gene_id "ERVLE_5_KI270794v1_alt"; transcript_id "ERVLE_5_KI270794v1_alt"; locus "ERVLE_5_KI270794v1_alt"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3806"; model_cov "1621"; model_pct "28.6"; chr5_KI270794v1_alt rmsk exon 124661 124908 784 - . gene_id "ERVLE_5_KI270794v1_alt"; transcript_id "ERVLE_5_KI270794v1_alt"; locus "ERVLE_5_KI270794v1_alt"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3806"; repClass "LTR"; repEnd "429"; repFamily "ERVL"; repLeft "188"; repStart "-234"; chr5_KI270794v1_alt rmsk exon 124949 126505 5937 - . gene_id "ERVLE_5_KI270794v1_alt"; transcript_id "ERVLE_5_KI270794v1_alt"; locus "ERVLE_5_KI270794v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3806"; repClass "LTR"; repEnd "2274"; repFamily "ERVL"; repLeft "653"; repStart "-3393"; ### ERV316A3_5_KI270795v1_alt ### chr5_KI270795v1_alt rmsk gene 70596 75876 . - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2877"; model_cov "3704"; model_pct "70.9"; chr5_KI270795v1_alt rmsk exon 70596 70961 555 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "1"; repStart "-30"; chr5_KI270795v1_alt rmsk exon 71169 71975 1903 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "4092"; repStart "-274"; chr5_KI270795v1_alt rmsk exon 71986 73033 3396 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "2349"; repStart "-1783"; chr5_KI270795v1_alt rmsk exon 73322 73741 3396 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "1885"; repStart "-2878"; chr5_KI270795v1_alt rmsk exon 73760 74091 702 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "2159"; repFamily "ERVL"; repLeft "1799"; repStart "-3067"; chr5_KI270795v1_alt rmsk exon 74629 75334 2355 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "783"; repStart "-3724"; chr5_KI270795v1_alt rmsk exon 75694 75876 2355 - . gene_id "ERV316A3_5_KI270795v1_alt"; transcript_id "ERV316A3_5_KI270795v1_alt"; locus "ERV316A3_5_KI270795v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2877"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "574"; repStart "-4444"; ### LTR23_5_KI270897v1_alt ### chr5_KI270897v1_alt rmsk gene 15996 17811 . + . gene_id "LTR23_5_KI270897v1_alt"; transcript_id "LTR23_5_KI270897v1_alt"; locus "LTR23_5_KI270897v1_alt"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0090"; model_cov "1682"; model_pct "32.8"; chr5_KI270897v1_alt rmsk exon 15996 17811 1312 + . gene_id "LTR23_5_KI270897v1_alt"; transcript_id "LTR23_5_KI270897v1_alt"; locus "LTR23_5_KI270897v1_alt"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0090"; repClass "LTR"; repEnd "2573"; repFamily "ERV1"; repLeft "-2550"; repStart "891"; ### HML6_5_KI270897v1_alt(a) ### chr5_KI270897v1_alt rmsk gene 874915 876861 . + . gene_id "HML6_5_KI270897v1_alt(a)"; transcript_id "HML6_5_KI270897v1_alt(a)"; locus "HML6_5_KI270897v1_alt(a)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0132"; model_cov "1240"; model_pct "17.2"; chr5_KI270897v1_alt rmsk exon 874915 874969 267 + . gene_id "HML6_5_KI270897v1_alt(a)"; transcript_id "HML6_5_KI270897v1_alt(a)"; locus "HML6_5_KI270897v1_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0132"; repClass "LTR"; repEnd "178"; repFamily "ERVK"; repLeft "-7024"; repStart "110"; chr5_KI270897v1_alt rmsk exon 875034 875234 596 + . gene_id "HML6_5_KI270897v1_alt(a)"; transcript_id "HML6_5_KI270897v1_alt(a)"; locus "HML6_5_KI270897v1_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0132"; repClass "LTR"; repEnd "232"; repFamily "ERVK"; repLeft "-6970"; repStart "15"; chr5_KI270897v1_alt rmsk exon 875377 876726 4558 + . gene_id "HML6_5_KI270897v1_alt(a)"; transcript_id "HML6_5_KI270897v1_alt(a)"; locus "HML6_5_KI270897v1_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0132"; repClass "LTR"; repEnd "2235"; repFamily "ERVK"; repLeft "-4967"; repStart "1280"; chr5_KI270897v1_alt rmsk exon 876727 876861 715 + . gene_id "HML6_5_KI270897v1_alt(a)"; transcript_id "HML6_5_KI270897v1_alt(a)"; locus "HML6_5_KI270897v1_alt(a)"; repName "LTR3B_"; geneRegion "ltr"; locid "HERVK3-int_0132"; repClass "LTR"; repEnd "453"; repFamily "ERVK"; repLeft "-46"; repStart "317"; ### ERVLE_5_KI270897v1_alt ### chr5_KI270897v1_alt rmsk gene 1098151 1100672 . - . gene_id "ERVLE_5_KI270897v1_alt"; transcript_id "ERVLE_5_KI270897v1_alt"; locus "ERVLE_5_KI270897v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3809"; model_cov "1259"; model_pct "22.2"; chr5_KI270897v1_alt rmsk exon 1098151 1098266 252 - . gene_id "ERVLE_5_KI270897v1_alt"; transcript_id "ERVLE_5_KI270897v1_alt"; locus "ERVLE_5_KI270897v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3809"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "3090"; repStart "-2456"; chr5_KI270897v1_alt rmsk exon 1098617 1099046 791 - . gene_id "ERVLE_5_KI270897v1_alt"; transcript_id "ERVLE_5_KI270897v1_alt"; locus "ERVLE_5_KI270897v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3809"; repClass "LTR"; repEnd "2899"; repFamily "ERVL"; repLeft "2456"; repStart "-2768"; chr5_KI270897v1_alt rmsk exon 1099936 1100672 1247 - . gene_id "ERVLE_5_KI270897v1_alt"; transcript_id "ERVLE_5_KI270897v1_alt"; locus "ERVLE_5_KI270897v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3809"; repClass "LTR"; repEnd "2553"; repFamily "ERVL"; repLeft "1858"; repStart "-3114"; ### HML6_5_KI270897v1_alt(b) ### chr5_KI270897v1_alt rmsk gene 1101872 1108376 . + . gene_id "HML6_5_KI270897v1_alt(b)"; transcript_id "HML6_5_KI270897v1_alt(b)"; locus "HML6_5_KI270897v1_alt(b)"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0133"; model_cov "7198"; model_pct "99.9"; chr5_KI270897v1_alt rmsk exon 1101872 1102353 3381 + . gene_id "HML6_5_KI270897v1_alt(b)"; transcript_id "HML6_5_KI270897v1_alt(b)"; locus "HML6_5_KI270897v1_alt(b)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0133"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr5_KI270897v1_alt rmsk exon 1102354 1102921 22968 + . gene_id "HML6_5_KI270897v1_alt(b)"; transcript_id "HML6_5_KI270897v1_alt(b)"; locus "HML6_5_KI270897v1_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0133"; repClass "LTR"; repEnd "590"; repFamily "ERVK"; repLeft "-6612"; repStart "1"; chr5_KI270897v1_alt rmsk exon 1103231 1107893 22968 + . gene_id "HML6_5_KI270897v1_alt(b)"; transcript_id "HML6_5_KI270897v1_alt(b)"; locus "HML6_5_KI270897v1_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0133"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "591"; chr5_KI270897v1_alt rmsk exon 1107896 1108376 3478 + . gene_id "HML6_5_KI270897v1_alt(b)"; transcript_id "HML6_5_KI270897v1_alt(b)"; locus "HML6_5_KI270897v1_alt(b)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0133"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERV316A3_5_KI270898v1_alt ### chr5_KI270898v1_alt rmsk gene 66002 71286 . - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2878"; model_cov "3704"; model_pct "70.9"; chr5_KI270898v1_alt rmsk exon 66002 66367 555 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "421"; repFamily "ERVL"; repLeft "1"; repStart "-30"; chr5_KI270898v1_alt rmsk exon 66575 67381 1903 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "4952"; repFamily "ERVL"; repLeft "4092"; repStart "-274"; chr5_KI270898v1_alt rmsk exon 67392 68439 3396 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "3443"; repFamily "ERVL"; repLeft "2349"; repStart "-1783"; chr5_KI270898v1_alt rmsk exon 68728 69147 3396 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "2348"; repFamily "ERVL"; repLeft "1885"; repStart "-2878"; chr5_KI270898v1_alt rmsk exon 69166 69497 702 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "2159"; repFamily "ERVL"; repLeft "1799"; repStart "-3067"; chr5_KI270898v1_alt rmsk exon 70035 70744 2331 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "1502"; repFamily "ERVL"; repLeft "783"; repStart "-3724"; chr5_KI270898v1_alt rmsk exon 71104 71286 2331 - . gene_id "ERV316A3_5_KI270898v1_alt"; transcript_id "ERV316A3_5_KI270898v1_alt"; locus "ERV316A3_5_KI270898v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2878"; repClass "LTR"; repEnd "782"; repFamily "ERVL"; repLeft "574"; repStart "-4444"; ### HERVS71_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 31772 42095 . - . gene_id "HERVS71_6_GL000250v2_alt"; transcript_id "HERVS71_6_GL000250v2_alt"; locus "HERVS71_6_GL000250v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0065"; model_cov "8932"; model_pct "99.5"; chr6_GL000250v2_alt rmsk exon 31772 32313 3660 - . gene_id "HERVS71_6_GL000250v2_alt"; transcript_id "HERVS71_6_GL000250v2_alt"; locus "HERVS71_6_GL000250v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0065"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000250v2_alt rmsk exon 32324 39542 60739 - . gene_id "HERVS71_6_GL000250v2_alt"; transcript_id "HERVS71_6_GL000250v2_alt"; locus "HERVS71_6_GL000250v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0065"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000250v2_alt rmsk exon 39835 41550 60739 - . gene_id "HERVS71_6_GL000250v2_alt"; transcript_id "HERVS71_6_GL000250v2_alt"; locus "HERVS71_6_GL000250v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0065"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000250v2_alt rmsk exon 41553 42095 3671 - . gene_id "HERVS71_6_GL000250v2_alt"; transcript_id "HERVS71_6_GL000250v2_alt"; locus "HERVS71_6_GL000250v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0065"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 133857 141453 . - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0210"; model_cov "4258"; model_pct "79.7"; chr6_GL000250v2_alt rmsk exon 133857 134244 2502 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000250v2_alt rmsk exon 134245 134905 9017 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000250v2_alt rmsk exon 135207 135878 9017 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000250v2_alt rmsk exon 136180 136217 9017 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000250v2_alt rmsk exon 136206 136323 788 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000250v2_alt rmsk exon 136315 137451 7614 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000250v2_alt rmsk exon 138738 139532 10238 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000250v2_alt rmsk exon 139845 140150 10238 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6_GL000250v2_alt rmsk exon 140761 141268 10238 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6_GL000250v2_alt rmsk exon 141269 141453 2524 - . gene_id "LTR57_6_GL000250v2_alt"; transcript_id "LTR57_6_GL000250v2_alt"; locus "LTR57_6_GL000250v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0210"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6_GL000250v2_alt(a) ### chr6_GL000250v2_alt rmsk gene 408098 408887 . - . gene_id "MER41_6_GL000250v2_alt(a)"; transcript_id "MER41_6_GL000250v2_alt(a)"; locus "MER41_6_GL000250v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0643"; model_cov "789"; model_pct "13.3"; chr6_GL000250v2_alt rmsk exon 408098 408887 5160 - . gene_id "MER41_6_GL000250v2_alt(a)"; transcript_id "MER41_6_GL000250v2_alt(a)"; locus "MER41_6_GL000250v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0643"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4306"; repStart "-851"; ### MER41_6_GL000250v2_alt(b) ### chr6_GL000250v2_alt rmsk gene 408889 410126 . + . gene_id "MER41_6_GL000250v2_alt(b)"; transcript_id "MER41_6_GL000250v2_alt(b)"; locus "MER41_6_GL000250v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0644"; model_cov "745"; model_pct "12.5"; chr6_GL000250v2_alt rmsk exon 408889 409620 4945 + . gene_id "MER41_6_GL000250v2_alt(b)"; transcript_id "MER41_6_GL000250v2_alt(b)"; locus "MER41_6_GL000250v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0644"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000250v2_alt rmsk exon 409621 410126 2684 + . gene_id "MER41_6_GL000250v2_alt(b)"; transcript_id "MER41_6_GL000250v2_alt(b)"; locus "MER41_6_GL000250v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0644"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### MER4_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 787520 793063 . - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1013"; model_cov "3139"; model_pct "47.6"; chr6_GL000250v2_alt rmsk exon 787520 789171 8673 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1013"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000250v2_alt rmsk exon 789468 790075 8673 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1013"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000250v2_alt rmsk exon 790063 790139 2125 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1013"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000250v2_alt rmsk exon 790663 791507 2125 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1013"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000250v2_alt rmsk exon 792559 792640 482 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1013"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000250v2_alt rmsk exon 792644 793063 2471 - . gene_id "MER4_6_GL000250v2_alt"; transcript_id "MER4_6_GL000250v2_alt"; locus "MER4_6_GL000250v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1013"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000250v2_alt(a) ### chr6_GL000250v2_alt rmsk gene 845326 849811 . - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2880"; model_cov "1992"; model_pct "38.1"; chr6_GL000250v2_alt rmsk exon 845326 846034 3441 - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2880"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6_GL000250v2_alt rmsk exon 846559 847177 3441 - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2880"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2789"; repStart "-1847"; chr6_GL000250v2_alt rmsk exon 847492 847675 566 - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2880"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000250v2_alt rmsk exon 848948 849098 793 - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2880"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000250v2_alt rmsk exon 849394 849811 890 - . gene_id "ERV316A3_6_GL000250v2_alt(a)"; transcript_id "ERV316A3_6_GL000250v2_alt(a)"; locus "ERV316A3_6_GL000250v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2880"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### ERV316A3_6_GL000250v2_alt(b) ### chr6_GL000250v2_alt rmsk gene 1033642 1038785 . + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2881"; model_cov "4121"; model_pct "78.9"; chr6_GL000250v2_alt rmsk exon 1033642 1034075 1173 + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2881"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000250v2_alt rmsk exon 1034326 1034756 994 + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2881"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-4517"; repStart "233"; chr6_GL000250v2_alt rmsk exon 1034761 1037205 5009 + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2881"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000250v2_alt rmsk exon 1037212 1038411 3269 + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2881"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000250v2_alt rmsk exon 1038414 1038785 1175 + . gene_id "ERV316A3_6_GL000250v2_alt(b)"; transcript_id "ERV316A3_6_GL000250v2_alt(b)"; locus "ERV316A3_6_GL000250v2_alt(b)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2881"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000250v2_alt(c) ### chr6_GL000250v2_alt rmsk gene 1058938 1060163 . + . gene_id "ERV316A3_6_GL000250v2_alt(c)"; transcript_id "ERV316A3_6_GL000250v2_alt(c)"; locus "ERV316A3_6_GL000250v2_alt(c)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2882"; model_cov "862"; model_pct "16.5"; chr6_GL000250v2_alt rmsk exon 1058938 1059779 1852 + . gene_id "ERV316A3_6_GL000250v2_alt(c)"; transcript_id "ERV316A3_6_GL000250v2_alt(c)"; locus "ERV316A3_6_GL000250v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2882"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000250v2_alt rmsk exon 1059783 1060163 1310 + . gene_id "ERV316A3_6_GL000250v2_alt(c)"; transcript_id "ERV316A3_6_GL000250v2_alt(c)"; locus "ERV316A3_6_GL000250v2_alt(c)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2882"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000250v2_alt(d) ### chr6_GL000250v2_alt rmsk gene 1081572 1084311 . + . gene_id "ERV316A3_6_GL000250v2_alt(d)"; transcript_id "ERV316A3_6_GL000250v2_alt(d)"; locus "ERV316A3_6_GL000250v2_alt(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2883"; model_cov "2330"; model_pct "44.6"; chr6_GL000250v2_alt rmsk exon 1081572 1082705 2800 + . gene_id "ERV316A3_6_GL000250v2_alt(d)"; transcript_id "ERV316A3_6_GL000250v2_alt(d)"; locus "ERV316A3_6_GL000250v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2883"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000250v2_alt rmsk exon 1082706 1083915 3033 + . gene_id "ERV316A3_6_GL000250v2_alt(d)"; transcript_id "ERV316A3_6_GL000250v2_alt(d)"; locus "ERV316A3_6_GL000250v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2883"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000250v2_alt rmsk exon 1083919 1084311 1261 + . gene_id "ERV316A3_6_GL000250v2_alt(d)"; transcript_id "ERV316A3_6_GL000250v2_alt(d)"; locus "ERV316A3_6_GL000250v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2883"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000250v2_alt(e) ### chr6_GL000250v2_alt rmsk gene 1134004 1139479 . + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2884"; model_cov "4204"; model_pct "80.4"; chr6_GL000250v2_alt rmsk exon 1134004 1134441 1296 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000250v2_alt rmsk exon 1134444 1134987 390 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4430"; repStart "233"; chr6_GL000250v2_alt rmsk exon 1135123 1136977 5409 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000250v2_alt rmsk exon 1137271 1137876 5409 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000250v2_alt rmsk exon 1137877 1139081 3479 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000250v2_alt rmsk exon 1139092 1139479 1161 + . gene_id "ERV316A3_6_GL000250v2_alt(e)"; transcript_id "ERV316A3_6_GL000250v2_alt(e)"; locus "ERV316A3_6_GL000250v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2884"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000250v2_alt(f) ### chr6_GL000250v2_alt rmsk gene 1151852 1153281 . + . gene_id "ERV316A3_6_GL000250v2_alt(f)"; transcript_id "ERV316A3_6_GL000250v2_alt(f)"; locus "ERV316A3_6_GL000250v2_alt(f)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2885"; model_cov "1435"; model_pct "27.5"; chr6_GL000250v2_alt rmsk exon 1151852 1152123 377 + . gene_id "ERV316A3_6_GL000250v2_alt(f)"; transcript_id "ERV316A3_6_GL000250v2_alt(f)"; locus "ERV316A3_6_GL000250v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2885"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "995"; chr6_GL000250v2_alt rmsk exon 1152122 1153281 2915 + . gene_id "ERV316A3_6_GL000250v2_alt(f)"; transcript_id "ERV316A3_6_GL000250v2_alt(f)"; locus "ERV316A3_6_GL000250v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2885"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000250v2_alt(g) ### chr6_GL000250v2_alt rmsk gene 1172456 1177926 . + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2886"; model_cov "4203"; model_pct "80.4"; chr6_GL000250v2_alt rmsk exon 1172456 1172898 1165 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000250v2_alt rmsk exon 1172910 1173473 707 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "16"; chr6_GL000250v2_alt rmsk exon 1173583 1176056 5233 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000250v2_alt rmsk exon 1176057 1176626 1434 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000250v2_alt rmsk exon 1176919 1177542 1565 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "4393"; chr6_GL000250v2_alt rmsk exon 1177545 1177926 1282 + . gene_id "ERV316A3_6_GL000250v2_alt(g)"; transcript_id "ERV316A3_6_GL000250v2_alt(g)"; locus "ERV316A3_6_GL000250v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2886"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000250v2_alt(h) ### chr6_GL000250v2_alt rmsk gene 1204668 1208164 . + . gene_id "ERV316A3_6_GL000250v2_alt(h)"; transcript_id "ERV316A3_6_GL000250v2_alt(h)"; locus "ERV316A3_6_GL000250v2_alt(h)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2889"; model_cov "3059"; model_pct "58.5"; chr6_GL000250v2_alt rmsk exon 1204668 1206494 3477 + . gene_id "ERV316A3_6_GL000250v2_alt(h)"; transcript_id "ERV316A3_6_GL000250v2_alt(h)"; locus "ERV316A3_6_GL000250v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2889"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000250v2_alt rmsk exon 1206503 1207288 1745 + . gene_id "ERV316A3_6_GL000250v2_alt(h)"; transcript_id "ERV316A3_6_GL000250v2_alt(h)"; locus "ERV316A3_6_GL000250v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2889"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-674"; repStart "3783"; chr6_GL000250v2_alt rmsk exon 1207393 1207767 810 + . gene_id "ERV316A3_6_GL000250v2_alt(h)"; transcript_id "ERV316A3_6_GL000250v2_alt(h)"; locus "ERV316A3_6_GL000250v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2889"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4556"; chr6_GL000250v2_alt rmsk exon 1207776 1208164 1217 + . gene_id "ERV316A3_6_GL000250v2_alt(h)"; transcript_id "ERV316A3_6_GL000250v2_alt(h)"; locus "ERV316A3_6_GL000250v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2889"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 1220203 1222631 . + . gene_id "HERVP71A_6_GL000250v2_alt"; transcript_id "HERVP71A_6_GL000250v2_alt"; locus "HERVP71A_6_GL000250v2_alt"; category "internal"; intModel "HERVP71A-int"; locid "HERVP71A-int_0083"; model_cov "1080"; model_pct "14.2"; chr6_GL000250v2_alt rmsk exon 1220203 1220649 2794 + . gene_id "HERVP71A_6_GL000250v2_alt"; transcript_id "HERVP71A_6_GL000250v2_alt"; locus "HERVP71A_6_GL000250v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0083"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000250v2_alt rmsk exon 1221985 1222631 3851 + . gene_id "HERVP71A_6_GL000250v2_alt"; transcript_id "HERVP71A_6_GL000250v2_alt"; locus "HERVP71A_6_GL000250v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0083"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; ### ERV316A3_6_GL000250v2_alt(i) ### chr6_GL000250v2_alt rmsk gene 1255663 1260999 . + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2890"; model_cov "4233"; model_pct "81.0"; chr6_GL000250v2_alt rmsk exon 1255663 1256106 1450 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000250v2_alt rmsk exon 1256345 1256719 390 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "636"; repFamily "ERVL"; repLeft "-4590"; repStart "219"; chr6_GL000250v2_alt rmsk exon 1256798 1258382 4844 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000250v2_alt rmsk exon 1258697 1259568 4844 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "2971"; repFamily "ERVL"; repLeft "-2255"; repStart "1925"; chr6_GL000250v2_alt rmsk exon 1259569 1260772 2864 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000250v2_alt rmsk exon 1260786 1260999 708 + . gene_id "ERV316A3_6_GL000250v2_alt(i)"; transcript_id "ERV316A3_6_GL000250v2_alt(i)"; locus "ERV316A3_6_GL000250v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2890"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6_GL000250v2_alt(j) ### chr6_GL000250v2_alt rmsk gene 1606257 1606976 . + . gene_id "ERV316A3_6_GL000250v2_alt(j)"; transcript_id "ERV316A3_6_GL000250v2_alt(j)"; locus "ERV316A3_6_GL000250v2_alt(j)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2891"; model_cov "707"; model_pct "13.5"; chr6_GL000250v2_alt rmsk exon 1606257 1606976 1293 + . gene_id "ERV316A3_6_GL000250v2_alt(j)"; transcript_id "ERV316A3_6_GL000250v2_alt(j)"; locus "ERV316A3_6_GL000250v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2891"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1748"; ### ERVLE_6_GL000250v2_alt(a) ### chr6_GL000250v2_alt rmsk gene 1709413 1710037 . - . gene_id "ERVLE_6_GL000250v2_alt(a)"; transcript_id "ERVLE_6_GL000250v2_alt(a)"; locus "ERVLE_6_GL000250v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3811"; model_cov "653"; model_pct "11.5"; chr6_GL000250v2_alt rmsk exon 1709413 1710037 1319 - . gene_id "ERVLE_6_GL000250v2_alt(a)"; transcript_id "ERVLE_6_GL000250v2_alt(a)"; locus "ERVLE_6_GL000250v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3811"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### ERVLE_6_GL000250v2_alt(b) ### chr6_GL000250v2_alt rmsk gene 2366809 2370861 . - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3813"; model_cov "2673"; model_pct "47.2"; chr6_GL000250v2_alt rmsk exon 2366809 2367894 3772 - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3813"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000250v2_alt rmsk exon 2367939 2368085 403 - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3813"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000250v2_alt rmsk exon 2368546 2369331 1471 - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3813"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6_GL000250v2_alt rmsk exon 2369631 2369668 1081 - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3813"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "756"; repStart "-4878"; chr6_GL000250v2_alt rmsk exon 2370457 2370861 1081 - . gene_id "ERVLE_6_GL000250v2_alt(b)"; transcript_id "ERVLE_6_GL000250v2_alt(b)"; locus "ERVLE_6_GL000250v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3813"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "339"; repStart "-4912"; ### HUERSP2_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 3706557 3708694 . + . gene_id "HUERSP2_6_GL000250v2_alt"; transcript_id "HUERSP2_6_GL000250v2_alt"; locus "HUERSP2_6_GL000250v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0133"; model_cov "1234"; model_pct "40.0"; chr6_GL000250v2_alt rmsk exon 3706557 3707531 6277 + . gene_id "HUERSP2_6_GL000250v2_alt"; transcript_id "HUERSP2_6_GL000250v2_alt"; locus "HUERSP2_6_GL000250v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0133"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000250v2_alt rmsk exon 3707608 3707856 1572 + . gene_id "HUERSP2_6_GL000250v2_alt"; transcript_id "HUERSP2_6_GL000250v2_alt"; locus "HUERSP2_6_GL000250v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0133"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000250v2_alt rmsk exon 3707859 3708694 5020 + . gene_id "HUERSP2_6_GL000250v2_alt"; transcript_id "HUERSP2_6_GL000250v2_alt"; locus "HUERSP2_6_GL000250v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0133"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 3807739 3811843 . - . gene_id "HML6_6_GL000250v2_alt"; transcript_id "HML6_6_GL000250v2_alt"; locus "HML6_6_GL000250v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0134"; model_cov "3408"; model_pct "47.3"; chr6_GL000250v2_alt rmsk exon 3807739 3809574 23185 - . gene_id "HML6_6_GL000250v2_alt"; transcript_id "HML6_6_GL000250v2_alt"; locus "HML6_6_GL000250v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0134"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000250v2_alt rmsk exon 3809876 3811388 23185 - . gene_id "HML6_6_GL000250v2_alt"; transcript_id "HML6_6_GL000250v2_alt"; locus "HML6_6_GL000250v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0134"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000250v2_alt rmsk exon 3811423 3811843 2644 - . gene_id "HML6_6_GL000250v2_alt"; transcript_id "HML6_6_GL000250v2_alt"; locus "HML6_6_GL000250v2_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0134"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML5_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 4353906 4361194 . + . gene_id "HML5_6_GL000250v2_alt"; transcript_id "HML5_6_GL000250v2_alt"; locus "HML5_6_GL000250v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0175"; model_cov "6805"; model_pct "99.5"; chr6_GL000250v2_alt rmsk exon 4353906 4354370 2784 + . gene_id "HML5_6_GL000250v2_alt"; transcript_id "HML5_6_GL000250v2_alt"; locus "HML5_6_GL000250v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0175"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000250v2_alt rmsk exon 4354373 4361194 52274 + . gene_id "HML5_6_GL000250v2_alt"; transcript_id "HML5_6_GL000250v2_alt"; locus "HML5_6_GL000250v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0175"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### HUERSP3_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 4422363 4429626 . - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0275"; model_cov "4769"; model_pct "53.5"; chr6_GL000250v2_alt rmsk exon 4422363 4423001 4277 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000250v2_alt rmsk exon 4423002 4423276 1530 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000250v2_alt rmsk exon 4423740 4423851 486 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6_GL000250v2_alt rmsk exon 4423852 4424583 4162 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6_GL000250v2_alt rmsk exon 4424570 4425208 4160 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6_GL000250v2_alt rmsk exon 4425211 4425352 1018 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6_GL000250v2_alt rmsk exon 4425346 4426560 8374 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6_GL000250v2_alt rmsk exon 4427558 4428570 6860 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6_GL000250v2_alt rmsk exon 4428580 4428884 1476 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6_GL000250v2_alt rmsk exon 4428890 4428947 309 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6_GL000250v2_alt rmsk exon 4428993 4429626 4024 - . gene_id "HUERSP3_6_GL000250v2_alt"; transcript_id "HUERSP3_6_GL000250v2_alt"; locus "HUERSP3_6_GL000250v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0275"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVH_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 4650563 4656454 . + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1328"; model_cov "5066"; model_pct "65.7"; chr6_GL000250v2_alt rmsk exon 4650563 4651723 7164 + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1328"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6_GL000250v2_alt rmsk exon 4651724 4653561 11527 + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1328"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6_GL000250v2_alt rmsk exon 4653559 4655461 13297 + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1328"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6_GL000250v2_alt rmsk exon 4655852 4656067 1312 + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1328"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7490"; chr6_GL000250v2_alt rmsk exon 4656068 4656454 2757 + . gene_id "HERVH_6_GL000250v2_alt"; transcript_id "HERVH_6_GL000250v2_alt"; locus "HERVH_6_GL000250v2_alt"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1328"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6_GL000250v2_alt ### chr6_GL000250v2_alt rmsk gene 4656535 4659893 . - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0198"; model_cov "2118"; model_pct "30.7"; chr6_GL000250v2_alt rmsk exon 4656535 4658249 16121 - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0198"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6_GL000250v2_alt rmsk exon 4658544 4658621 16121 - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0198"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6_GL000250v2_alt rmsk exon 4658932 4658956 16121 - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0198"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6_GL000250v2_alt rmsk exon 4659258 4659447 16121 - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0198"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6_GL000250v2_alt rmsk exon 4659754 4659893 16121 - . gene_id "HARLEQUIN_6_GL000250v2_alt"; transcript_id "HARLEQUIN_6_GL000250v2_alt"; locus "HARLEQUIN_6_GL000250v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0198"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2035"; repStart "-4726"; ### HML2_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 172412 182779 . + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0134"; model_cov "7558"; model_pct "100.0"; chr6_GL000251v2_alt rmsk exon 172412 173229 3560 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189"; chr6_GL000251v2_alt rmsk exon 173233 173967 4885 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr6_GL000251v2_alt rmsk exon 174045 177202 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722"; chr6_GL000251v2_alt rmsk exon 177203 178177 5650 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 178178 181831 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910"; chr6_GL000251v2_alt rmsk exon 181832 182779 5423 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 194186 195275 . - . gene_id "ERVLE_6_GL000251v2_alt(a)"; transcript_id "ERVLE_6_GL000251v2_alt(a)"; locus "ERVLE_6_GL000251v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3816"; model_cov "618"; model_pct "10.9"; chr6_GL000251v2_alt rmsk exon 194186 194288 349 - . gene_id "ERVLE_6_GL000251v2_alt(a)"; transcript_id "ERVLE_6_GL000251v2_alt(a)"; locus "ERVLE_6_GL000251v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3816"; repClass "LTR"; repEnd "5489"; repFamily "ERVL"; repLeft "5370"; repStart "-178"; chr6_GL000251v2_alt rmsk exon 194786 195275 1648 - . gene_id "ERVLE_6_GL000251v2_alt(a)"; transcript_id "ERVLE_6_GL000251v2_alt(a)"; locus "ERVLE_6_GL000251v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3816"; repClass "LTR"; repEnd "5295"; repFamily "ERVL"; repLeft "4796"; repStart "-372"; ### HERVS71_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 256873 267206 . - . gene_id "HERVS71_6_GL000251v2_alt"; transcript_id "HERVS71_6_GL000251v2_alt"; locus "HERVS71_6_GL000251v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0066"; model_cov "8932"; model_pct "99.5"; chr6_GL000251v2_alt rmsk exon 256873 257414 3672 - . gene_id "HERVS71_6_GL000251v2_alt"; transcript_id "HERVS71_6_GL000251v2_alt"; locus "HERVS71_6_GL000251v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0066"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000251v2_alt rmsk exon 257425 264641 60759 - . gene_id "HERVS71_6_GL000251v2_alt"; transcript_id "HERVS71_6_GL000251v2_alt"; locus "HERVS71_6_GL000251v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0066"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000251v2_alt rmsk exon 264946 266661 60759 - . gene_id "HERVS71_6_GL000251v2_alt"; transcript_id "HERVS71_6_GL000251v2_alt"; locus "HERVS71_6_GL000251v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0066"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000251v2_alt rmsk exon 266664 267206 3671 - . gene_id "HERVS71_6_GL000251v2_alt"; transcript_id "HERVS71_6_GL000251v2_alt"; locus "HERVS71_6_GL000251v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0066"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 358808 366564 . - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0211"; model_cov "4258"; model_pct "79.7"; chr6_GL000251v2_alt rmsk exon 358808 359195 2502 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000251v2_alt rmsk exon 359196 359856 9049 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000251v2_alt rmsk exon 360157 360828 9049 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000251v2_alt rmsk exon 361130 361167 9049 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000251v2_alt rmsk exon 361156 361273 788 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000251v2_alt rmsk exon 361265 362401 7619 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000251v2_alt rmsk exon 363848 364642 10283 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000251v2_alt rmsk exon 364956 365261 10283 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6_GL000251v2_alt rmsk exon 365872 366379 10283 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6_GL000251v2_alt rmsk exon 366380 366564 2524 - . gene_id "LTR57_6_GL000251v2_alt"; transcript_id "LTR57_6_GL000251v2_alt"; locus "LTR57_6_GL000251v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0211"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 629025 629808 . - . gene_id "MER41_6_GL000251v2_alt(a)"; transcript_id "MER41_6_GL000251v2_alt(a)"; locus "MER41_6_GL000251v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0645"; model_cov "786"; model_pct "13.2"; chr6_GL000251v2_alt rmsk exon 629025 629808 5193 - . gene_id "MER41_6_GL000251v2_alt(a)"; transcript_id "MER41_6_GL000251v2_alt(a)"; locus "MER41_6_GL000251v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0645"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 629814 631051 . + . gene_id "MER41_6_GL000251v2_alt(b)"; transcript_id "MER41_6_GL000251v2_alt(b)"; locus "MER41_6_GL000251v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0646"; model_cov "745"; model_pct "12.5"; chr6_GL000251v2_alt rmsk exon 629814 630545 4945 + . gene_id "MER41_6_GL000251v2_alt(b)"; transcript_id "MER41_6_GL000251v2_alt(b)"; locus "MER41_6_GL000251v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0646"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000251v2_alt rmsk exon 630547 631051 2674 + . gene_id "MER41_6_GL000251v2_alt(b)"; transcript_id "MER41_6_GL000251v2_alt(b)"; locus "MER41_6_GL000251v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0646"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "2"; ### ERV316A3_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 695687 699084 . + . gene_id "ERV316A3_6_GL000251v2_alt(a)"; transcript_id "ERV316A3_6_GL000251v2_alt(a)"; locus "ERV316A3_6_GL000251v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2893"; model_cov "2675"; model_pct "51.2"; chr6_GL000251v2_alt rmsk exon 695687 696400 1880 + . gene_id "ERV316A3_6_GL000251v2_alt(a)"; transcript_id "ERV316A3_6_GL000251v2_alt(a)"; locus "ERV316A3_6_GL000251v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2893"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2542"; chr6_GL000251v2_alt rmsk exon 696468 698107 3974 + . gene_id "ERV316A3_6_GL000251v2_alt(a)"; transcript_id "ERV316A3_6_GL000251v2_alt(a)"; locus "ERV316A3_6_GL000251v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2893"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "3020"; chr6_GL000251v2_alt rmsk exon 698131 698403 639 + . gene_id "ERV316A3_6_GL000251v2_alt(a)"; transcript_id "ERV316A3_6_GL000251v2_alt(a)"; locus "ERV316A3_6_GL000251v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2893"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000251v2_alt rmsk exon 698635 699084 1205 + . gene_id "ERV316A3_6_GL000251v2_alt(a)"; transcript_id "ERV316A3_6_GL000251v2_alt(a)"; locus "ERV316A3_6_GL000251v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2893"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 732044 739375 . - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1329"; model_cov "6219"; model_pct "80.6"; chr6_GL000251v2_alt rmsk exon 732044 732482 2405 - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1329"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000251v2_alt rmsk exon 732483 733206 4639 - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1329"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6_GL000251v2_alt rmsk exon 733201 738340 15659 - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1329"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "791"; repStart "-1878"; chr6_GL000251v2_alt rmsk exon 738396 738933 968 - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1329"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6_GL000251v2_alt rmsk exon 738934 739375 2256 - . gene_id "HERVH_6_GL000251v2_alt(a)"; transcript_id "HERVH_6_GL000251v2_alt(a)"; locus "HERVH_6_GL000251v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1329"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### ERV316A3_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 890810 892394 . + . gene_id "ERV316A3_6_GL000251v2_alt(b)"; transcript_id "ERV316A3_6_GL000251v2_alt(b)"; locus "ERV316A3_6_GL000251v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2894"; model_cov "1658"; model_pct "31.7"; chr6_GL000251v2_alt rmsk exon 890810 892394 3221 + . gene_id "ERV316A3_6_GL000251v2_alt(b)"; transcript_id "ERV316A3_6_GL000251v2_alt(b)"; locus "ERV316A3_6_GL000251v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2894"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-2833"; repStart "735"; ### MER4_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 1008316 1013859 . - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1014"; model_cov "3139"; model_pct "47.6"; chr6_GL000251v2_alt rmsk exon 1008316 1009968 8662 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1014"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000251v2_alt rmsk exon 1010265 1010872 8662 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1014"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000251v2_alt rmsk exon 1010860 1010936 1730 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1014"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000251v2_alt rmsk exon 1011460 1012303 2068 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1014"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000251v2_alt rmsk exon 1013355 1013436 482 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1014"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000251v2_alt rmsk exon 1013440 1013859 2498 - . gene_id "MER4_6_GL000251v2_alt"; transcript_id "MER4_6_GL000251v2_alt"; locus "MER4_6_GL000251v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1014"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000251v2_alt(c) ### chr6_GL000251v2_alt rmsk gene 1066111 1070597 . - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2895"; model_cov "1992"; model_pct "38.1"; chr6_GL000251v2_alt rmsk exon 1066111 1066820 3433 - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2895"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3382"; repStart "-1158"; chr6_GL000251v2_alt rmsk exon 1067345 1067963 3433 - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2895"; repClass "LTR"; repEnd "3381"; repFamily "ERVL"; repLeft "2789"; repStart "-1845"; chr6_GL000251v2_alt rmsk exon 1068278 1068461 537 - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2895"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000251v2_alt rmsk exon 1069734 1069884 780 - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2895"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000251v2_alt rmsk exon 1070180 1070597 891 - . gene_id "ERV316A3_6_GL000251v2_alt(c)"; transcript_id "ERV316A3_6_GL000251v2_alt(c)"; locus "ERV316A3_6_GL000251v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2895"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 1170190 1170987 . + . gene_id "HERVL40_6_GL000251v2_alt"; transcript_id "HERVL40_6_GL000251v2_alt"; locus "HERVL40_6_GL000251v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0496"; model_cov "809"; model_pct "14.6"; chr6_GL000251v2_alt rmsk exon 1170190 1170987 1731 + . gene_id "HERVL40_6_GL000251v2_alt"; transcript_id "HERVL40_6_GL000251v2_alt"; locus "HERVL40_6_GL000251v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0496"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "415"; ### ERV316A3_6_GL000251v2_alt(d) ### chr6_GL000251v2_alt rmsk gene 1197381 1201541 . + . gene_id "ERV316A3_6_GL000251v2_alt(d)"; transcript_id "ERV316A3_6_GL000251v2_alt(d)"; locus "ERV316A3_6_GL000251v2_alt(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2896"; model_cov "3757"; model_pct "71.9"; chr6_GL000251v2_alt rmsk exon 1197381 1197475 335 + . gene_id "ERV316A3_6_GL000251v2_alt(d)"; transcript_id "ERV316A3_6_GL000251v2_alt(d)"; locus "ERV316A3_6_GL000251v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2896"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000251v2_alt rmsk exon 1197500 1199947 5543 + . gene_id "ERV316A3_6_GL000251v2_alt(d)"; transcript_id "ERV316A3_6_GL000251v2_alt(d)"; locus "ERV316A3_6_GL000251v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2896"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-1944"; repStart "832"; chr6_GL000251v2_alt rmsk exon 1199944 1201159 3660 + . gene_id "ERV316A3_6_GL000251v2_alt(d)"; transcript_id "ERV316A3_6_GL000251v2_alt(d)"; locus "ERV316A3_6_GL000251v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2896"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000251v2_alt rmsk exon 1201163 1201541 1054 + . gene_id "ERV316A3_6_GL000251v2_alt(d)"; transcript_id "ERV316A3_6_GL000251v2_alt(d)"; locus "ERV316A3_6_GL000251v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2896"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000251v2_alt(e) ### chr6_GL000251v2_alt rmsk gene 1251592 1256735 . + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2897"; model_cov "4121"; model_pct "78.9"; chr6_GL000251v2_alt rmsk exon 1251592 1252025 1269 + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2897"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 1252276 1252706 940 + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2897"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-4517"; repStart "233"; chr6_GL000251v2_alt rmsk exon 1252711 1255155 4699 + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2897"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000251v2_alt rmsk exon 1255162 1256361 3072 + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2897"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000251v2_alt rmsk exon 1256364 1256735 1090 + . gene_id "ERV316A3_6_GL000251v2_alt(e)"; transcript_id "ERV316A3_6_GL000251v2_alt(e)"; locus "ERV316A3_6_GL000251v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2897"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000251v2_alt(f) ### chr6_GL000251v2_alt rmsk gene 1276888 1278113 . + . gene_id "ERV316A3_6_GL000251v2_alt(f)"; transcript_id "ERV316A3_6_GL000251v2_alt(f)"; locus "ERV316A3_6_GL000251v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2898"; model_cov "862"; model_pct "16.5"; chr6_GL000251v2_alt rmsk exon 1276888 1277729 1915 + . gene_id "ERV316A3_6_GL000251v2_alt(f)"; transcript_id "ERV316A3_6_GL000251v2_alt(f)"; locus "ERV316A3_6_GL000251v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2898"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000251v2_alt rmsk exon 1277733 1278113 1350 + . gene_id "ERV316A3_6_GL000251v2_alt(f)"; transcript_id "ERV316A3_6_GL000251v2_alt(f)"; locus "ERV316A3_6_GL000251v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2898"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000251v2_alt(g) ### chr6_GL000251v2_alt rmsk gene 1299522 1302261 . + . gene_id "ERV316A3_6_GL000251v2_alt(g)"; transcript_id "ERV316A3_6_GL000251v2_alt(g)"; locus "ERV316A3_6_GL000251v2_alt(g)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2899"; model_cov "2330"; model_pct "44.6"; chr6_GL000251v2_alt rmsk exon 1299522 1300655 2852 + . gene_id "ERV316A3_6_GL000251v2_alt(g)"; transcript_id "ERV316A3_6_GL000251v2_alt(g)"; locus "ERV316A3_6_GL000251v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2899"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000251v2_alt rmsk exon 1300656 1301865 3108 + . gene_id "ERV316A3_6_GL000251v2_alt(g)"; transcript_id "ERV316A3_6_GL000251v2_alt(g)"; locus "ERV316A3_6_GL000251v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2899"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000251v2_alt rmsk exon 1301869 1302261 1291 + . gene_id "ERV316A3_6_GL000251v2_alt(g)"; transcript_id "ERV316A3_6_GL000251v2_alt(g)"; locus "ERV316A3_6_GL000251v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2899"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000251v2_alt(h) ### chr6_GL000251v2_alt rmsk gene 1355672 1361147 . + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2900"; model_cov "3796"; model_pct "72.6"; chr6_GL000251v2_alt rmsk exon 1355672 1356109 1368 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 1356488 1356636 360 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "529"; repFamily "ERVL"; repLeft "-4697"; repStart "374"; chr6_GL000251v2_alt rmsk exon 1356791 1358645 4926 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000251v2_alt rmsk exon 1358939 1359544 4926 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000251v2_alt rmsk exon 1359545 1360749 3190 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000251v2_alt rmsk exon 1360760 1361147 1035 + . gene_id "ERV316A3_6_GL000251v2_alt(h)"; transcript_id "ERV316A3_6_GL000251v2_alt(h)"; locus "ERV316A3_6_GL000251v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2900"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000251v2_alt(i) ### chr6_GL000251v2_alt rmsk gene 1373526 1374955 . + . gene_id "ERV316A3_6_GL000251v2_alt(i)"; transcript_id "ERV316A3_6_GL000251v2_alt(i)"; locus "ERV316A3_6_GL000251v2_alt(i)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2901"; model_cov "1347"; model_pct "25.8"; chr6_GL000251v2_alt rmsk exon 1373526 1373797 354 + . gene_id "ERV316A3_6_GL000251v2_alt(i)"; transcript_id "ERV316A3_6_GL000251v2_alt(i)"; locus "ERV316A3_6_GL000251v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2901"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "995"; chr6_GL000251v2_alt rmsk exon 1373880 1374955 2689 + . gene_id "ERV316A3_6_GL000251v2_alt(i)"; transcript_id "ERV316A3_6_GL000251v2_alt(i)"; locus "ERV316A3_6_GL000251v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2901"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1956"; ### ERV316A3_6_GL000251v2_alt(j) ### chr6_GL000251v2_alt rmsk gene 1394130 1399600 . + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2902"; model_cov "4203"; model_pct "80.4"; chr6_GL000251v2_alt rmsk exon 1394130 1394572 1165 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 1394584 1395147 707 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "16"; chr6_GL000251v2_alt rmsk exon 1395257 1397730 5256 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000251v2_alt rmsk exon 1397731 1398300 1434 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000251v2_alt rmsk exon 1398593 1399216 1565 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "4393"; chr6_GL000251v2_alt rmsk exon 1399219 1399600 1282 + . gene_id "ERV316A3_6_GL000251v2_alt(j)"; transcript_id "ERV316A3_6_GL000251v2_alt(j)"; locus "ERV316A3_6_GL000251v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2902"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000251v2_alt(k) ### chr6_GL000251v2_alt rmsk gene 1426343 1429839 . + . gene_id "ERV316A3_6_GL000251v2_alt(k)"; transcript_id "ERV316A3_6_GL000251v2_alt(k)"; locus "ERV316A3_6_GL000251v2_alt(k)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2905"; model_cov "3059"; model_pct "58.5"; chr6_GL000251v2_alt rmsk exon 1426343 1428169 3477 + . gene_id "ERV316A3_6_GL000251v2_alt(k)"; transcript_id "ERV316A3_6_GL000251v2_alt(k)"; locus "ERV316A3_6_GL000251v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2905"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000251v2_alt rmsk exon 1428178 1428963 1745 + . gene_id "ERV316A3_6_GL000251v2_alt(k)"; transcript_id "ERV316A3_6_GL000251v2_alt(k)"; locus "ERV316A3_6_GL000251v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2905"; repClass "LTR"; repEnd "4552"; repFamily "ERVL"; repLeft "-674"; repStart "3783"; chr6_GL000251v2_alt rmsk exon 1429068 1429442 810 + . gene_id "ERV316A3_6_GL000251v2_alt(k)"; transcript_id "ERV316A3_6_GL000251v2_alt(k)"; locus "ERV316A3_6_GL000251v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2905"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4556"; chr6_GL000251v2_alt rmsk exon 1429451 1429839 1217 + . gene_id "ERV316A3_6_GL000251v2_alt(k)"; transcript_id "ERV316A3_6_GL000251v2_alt(k)"; locus "ERV316A3_6_GL000251v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2905"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 1441878 1449755 . + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0085"; model_cov "3812"; model_pct "50.2"; chr6_GL000251v2_alt rmsk exon 1441878 1442324 2794 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000251v2_alt rmsk exon 1443660 1444306 3851 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; chr6_GL000251v2_alt rmsk exon 1445785 1446510 5130 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000251v2_alt rmsk exon 1446808 1446935 5130 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000251v2_alt rmsk exon 1446952 1447168 1314 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "5472"; repFamily "ERV1"; repLeft "-2118"; repStart "5243"; chr6_GL000251v2_alt rmsk exon 1447316 1448218 4764 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000251v2_alt rmsk exon 1448419 1449152 3963 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000251v2_alt rmsk exon 1449393 1449755 1983 + . gene_id "HERVP71A_6_GL000251v2_alt"; transcript_id "HERVP71A_6_GL000251v2_alt"; locus "HERVP71A_6_GL000251v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0085"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000251v2_alt(l) ### chr6_GL000251v2_alt rmsk gene 1477339 1482675 . + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2906"; model_cov "4021"; model_pct "76.9"; chr6_GL000251v2_alt rmsk exon 1477339 1477782 1377 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 1478021 1478141 406 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "219"; chr6_GL000251v2_alt rmsk exon 1478159 1478395 411 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "636"; repFamily "ERVL"; repLeft "-4590"; repStart "372"; chr6_GL000251v2_alt rmsk exon 1478474 1480058 5298 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000251v2_alt rmsk exon 1480373 1481244 5298 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6_GL000251v2_alt rmsk exon 1481245 1482448 3129 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000251v2_alt rmsk exon 1482462 1482675 750 + . gene_id "ERV316A3_6_GL000251v2_alt(l)"; transcript_id "ERV316A3_6_GL000251v2_alt(l)"; locus "ERV316A3_6_GL000251v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2906"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6_GL000251v2_alt(m) ### chr6_GL000251v2_alt rmsk gene 1755749 1757164 . + . gene_id "ERV316A3_6_GL000251v2_alt(m)"; transcript_id "ERV316A3_6_GL000251v2_alt(m)"; locus "ERV316A3_6_GL000251v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2907"; model_cov "1396"; model_pct "26.7"; chr6_GL000251v2_alt rmsk exon 1755749 1757164 2397 + . gene_id "ERV316A3_6_GL000251v2_alt(m)"; transcript_id "ERV316A3_6_GL000251v2_alt(m)"; locus "ERV316A3_6_GL000251v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2907"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 1859635 1860286 . - . gene_id "ERVLE_6_GL000251v2_alt(b)"; transcript_id "ERVLE_6_GL000251v2_alt(b)"; locus "ERVLE_6_GL000251v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3818"; model_cov "693"; model_pct "12.2"; chr6_GL000251v2_alt rmsk exon 1859635 1860286 1280 - . gene_id "ERVLE_6_GL000251v2_alt(b)"; transcript_id "ERVLE_6_GL000251v2_alt(b)"; locus "ERVLE_6_GL000251v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3818"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3176"; repStart "-1798"; ### HERVL_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 2445944 2451403 . + . gene_id "HERVL_6_GL000251v2_alt(a)"; transcript_id "HERVL_6_GL000251v2_alt(a)"; locus "HERVL_6_GL000251v2_alt(a)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1462"; model_cov "4774"; model_pct "84.4"; chr6_GL000251v2_alt rmsk exon 2445944 2447080 38337 + . gene_id "HERVL_6_GL000251v2_alt(a)"; transcript_id "HERVL_6_GL000251v2_alt(a)"; locus "HERVL_6_GL000251v2_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1462"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6_GL000251v2_alt rmsk exon 2447379 2450994 38337 + . gene_id "HERVL_6_GL000251v2_alt(a)"; transcript_id "HERVL_6_GL000251v2_alt(a)"; locus "HERVL_6_GL000251v2_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1462"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6_GL000251v2_alt rmsk exon 2450995 2451403 3163 + . gene_id "HERVL_6_GL000251v2_alt(a)"; transcript_id "HERVL_6_GL000251v2_alt(a)"; locus "HERVL_6_GL000251v2_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1462"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000251v2_alt(c) ### chr6_GL000251v2_alt rmsk gene 2516661 2520691 . - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3820"; model_cov "2716"; model_pct "47.9"; chr6_GL000251v2_alt rmsk exon 2516661 2517746 3482 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000251v2_alt rmsk exon 2517791 2517937 376 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000251v2_alt rmsk exon 2517997 2518018 364 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "2003"; repFamily "ERVL"; repLeft "1985"; repStart "-3664"; chr6_GL000251v2_alt rmsk exon 2518328 2519183 1349 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "1984"; repFamily "ERVL"; repLeft "993"; repStart "-3683"; chr6_GL000251v2_alt rmsk exon 2519483 2519520 997 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "756"; repStart "-4878"; chr6_GL000251v2_alt rmsk exon 2520308 2520691 997 - . gene_id "ERVLE_6_GL000251v2_alt(c)"; transcript_id "ERVLE_6_GL000251v2_alt(c)"; locus "ERVLE_6_GL000251v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3820"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "362"; repStart "-4912"; ### HARLEQUIN_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 2664320 2669221 . - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0199"; model_cov "4515"; model_pct "65.5"; chr6_GL000251v2_alt rmsk exon 2664320 2664890 3719 - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0199"; repClass "LTR"; repEnd "6472"; repFamily "ERV1"; repLeft "5886"; repStart "-424"; chr6_GL000251v2_alt rmsk exon 2664885 2666901 14778 - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0199"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000251v2_alt rmsk exon 2666901 2667873 7058 - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0199"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000251v2_alt rmsk exon 2667860 2668742 6564 - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0199"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "1"; repStart "-6003"; chr6_GL000251v2_alt rmsk exon 2668743 2669221 3957 - . gene_id "HARLEQUIN_6_GL000251v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(a)"; locus "HARLEQUIN_6_GL000251v2_alt(a)"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0199"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 2708182 2710894 . - . gene_id "HERV3_6_GL000251v2_alt"; transcript_id "HERV3_6_GL000251v2_alt"; locus "HERV3_6_GL000251v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0105"; model_cov "1870"; model_pct "22.2"; chr6_GL000251v2_alt rmsk exon 2708182 2709028 8657 - . gene_id "HERV3_6_GL000251v2_alt"; transcript_id "HERV3_6_GL000251v2_alt"; locus "HERV3_6_GL000251v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0105"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6502"; repStart "-1086"; chr6_GL000251v2_alt rmsk exon 2709331 2710310 8657 - . gene_id "HERV3_6_GL000251v2_alt"; transcript_id "HERV3_6_GL000251v2_alt"; locus "HERV3_6_GL000251v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0105"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6_GL000251v2_alt rmsk exon 2710312 2710432 824 - . gene_id "HERV3_6_GL000251v2_alt"; transcript_id "HERV3_6_GL000251v2_alt"; locus "HERV3_6_GL000251v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0105"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000251v2_alt rmsk exon 2710722 2710894 824 - . gene_id "HERV3_6_GL000251v2_alt"; transcript_id "HERV3_6_GL000251v2_alt"; locus "HERV3_6_GL000251v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0105"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 2714411 2718528 . - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0278"; model_cov "3538"; model_pct "58.8"; chr6_GL000251v2_alt rmsk exon 2714411 2714524 870 - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0278"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000251v2_alt rmsk exon 2714527 2715051 4006 - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0278"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4583"; repStart "-916"; chr6_GL000251v2_alt rmsk exon 2715039 2715268 1791 - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0278"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000251v2_alt rmsk exon 2715270 2718002 21382 - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0278"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000251v2_alt rmsk exon 2718015 2718528 4273 - . gene_id "HML3_6_GL000251v2_alt"; transcript_id "HML3_6_GL000251v2_alt"; locus "HML3_6_GL000251v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0278"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 2725931 2727463 . - . gene_id "ERVLB4_6_GL000251v2_alt(a)"; transcript_id "ERVLB4_6_GL000251v2_alt(a)"; locus "ERVLB4_6_GL000251v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1977"; model_cov "867"; model_pct "15.2"; chr6_GL000251v2_alt rmsk exon 2725931 2726263 1373 - . gene_id "ERVLB4_6_GL000251v2_alt(a)"; transcript_id "ERVLB4_6_GL000251v2_alt(a)"; locus "ERVLB4_6_GL000251v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1977"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000251v2_alt rmsk exon 2726267 2726698 3851 - . gene_id "ERVLB4_6_GL000251v2_alt(a)"; transcript_id "ERVLB4_6_GL000251v2_alt(a)"; locus "ERVLB4_6_GL000251v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1977"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000251v2_alt rmsk exon 2727017 2727463 3851 - . gene_id "ERVLB4_6_GL000251v2_alt(a)"; transcript_id "ERVLB4_6_GL000251v2_alt(a)"; locus "ERVLB4_6_GL000251v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1977"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERVLE_6_GL000251v2_alt(d) ### chr6_GL000251v2_alt rmsk gene 2772365 2773000 . + . gene_id "ERVLE_6_GL000251v2_alt(d)"; transcript_id "ERVLE_6_GL000251v2_alt(d)"; locus "ERVLE_6_GL000251v2_alt(d)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3821"; model_cov "643"; model_pct "11.3"; chr6_GL000251v2_alt rmsk exon 2772365 2772742 816 + . gene_id "ERVLE_6_GL000251v2_alt(d)"; transcript_id "ERVLE_6_GL000251v2_alt(d)"; locus "ERVLE_6_GL000251v2_alt(d)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3821"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2087"; repStart "3173"; chr6_GL000251v2_alt rmsk exon 2772768 2773000 450 + . gene_id "ERVLE_6_GL000251v2_alt(d)"; transcript_id "ERVLE_6_GL000251v2_alt(d)"; locus "ERVLE_6_GL000251v2_alt(d)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3821"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1782"; repStart "3649"; ### ERV316A3_6_GL000251v2_alt(n) ### chr6_GL000251v2_alt rmsk gene 2781465 2782907 . + . gene_id "ERV316A3_6_GL000251v2_alt(n)"; transcript_id "ERV316A3_6_GL000251v2_alt(n)"; locus "ERV316A3_6_GL000251v2_alt(n)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2908"; model_cov "1471"; model_pct "28.1"; chr6_GL000251v2_alt rmsk exon 2781465 2782907 3022 + . gene_id "ERV316A3_6_GL000251v2_alt(n)"; transcript_id "ERV316A3_6_GL000251v2_alt(n)"; locus "ERV316A3_6_GL000251v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2908"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 2801360 2802795 . - . gene_id "ERVLB4_6_GL000251v2_alt(b)"; transcript_id "ERVLB4_6_GL000251v2_alt(b)"; locus "ERVLB4_6_GL000251v2_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1978"; model_cov "756"; model_pct "13.2"; chr6_GL000251v2_alt rmsk exon 2801360 2801698 1293 - . gene_id "ERVLB4_6_GL000251v2_alt(b)"; transcript_id "ERVLB4_6_GL000251v2_alt(b)"; locus "ERVLB4_6_GL000251v2_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1978"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "-66"; repStart "-115"; chr6_GL000251v2_alt rmsk exon 2801706 2802119 3062 - . gene_id "ERVLB4_6_GL000251v2_alt(b)"; transcript_id "ERVLB4_6_GL000251v2_alt(b)"; locus "ERVLB4_6_GL000251v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1978"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5295"; repStart "-9"; chr6_GL000251v2_alt rmsk exon 2802438 2802795 3062 - . gene_id "ERVLB4_6_GL000251v2_alt(b)"; transcript_id "ERVLB4_6_GL000251v2_alt(b)"; locus "ERVLB4_6_GL000251v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1978"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4948"; repStart "-420"; ### ERVLB4_6_GL000251v2_alt(c) ### chr6_GL000251v2_alt rmsk gene 2856663 2857451 . - . gene_id "ERVLB4_6_GL000251v2_alt(c)"; transcript_id "ERVLB4_6_GL000251v2_alt(c)"; locus "ERVLB4_6_GL000251v2_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1980"; model_cov "809"; model_pct "14.2"; chr6_GL000251v2_alt rmsk exon 2856663 2857451 2595 - . gene_id "ERVLB4_6_GL000251v2_alt(c)"; transcript_id "ERVLB4_6_GL000251v2_alt(c)"; locus "ERVLB4_6_GL000251v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1980"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "75"; repStart "-4830"; ### ERV316A3_6_GL000251v2_alt(o) ### chr6_GL000251v2_alt rmsk gene 2864091 2867632 . - . gene_id "ERV316A3_6_GL000251v2_alt(o)"; transcript_id "ERV316A3_6_GL000251v2_alt(o)"; locus "ERV316A3_6_GL000251v2_alt(o)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2909"; model_cov "3041"; model_pct "58.2"; chr6_GL000251v2_alt rmsk exon 2864091 2864441 1080 - . gene_id "ERV316A3_6_GL000251v2_alt(o)"; transcript_id "ERV316A3_6_GL000251v2_alt(o)"; locus "ERV316A3_6_GL000251v2_alt(o)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2909"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "51"; repStart "-52"; chr6_GL000251v2_alt rmsk exon 2864443 2865472 2774 - . gene_id "ERV316A3_6_GL000251v2_alt(o)"; transcript_id "ERV316A3_6_GL000251v2_alt(o)"; locus "ERV316A3_6_GL000251v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2909"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3971"; repStart "-247"; chr6_GL000251v2_alt rmsk exon 2865565 2865690 266 - . gene_id "ERV316A3_6_GL000251v2_alt(o)"; transcript_id "ERV316A3_6_GL000251v2_alt(o)"; locus "ERV316A3_6_GL000251v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2909"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3797"; repStart "-1290"; chr6_GL000251v2_alt rmsk exon 2865714 2867632 3836 - . gene_id "ERV316A3_6_GL000251v2_alt(o)"; transcript_id "ERV316A3_6_GL000251v2_alt(o)"; locus "ERV316A3_6_GL000251v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2909"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "1388"; repStart "-1944"; ### HERVL_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 2910193 2916309 . + . gene_id "HERVL_6_GL000251v2_alt(b)"; transcript_id "HERVL_6_GL000251v2_alt(b)"; locus "HERVL_6_GL000251v2_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1464"; model_cov "5653"; model_pct "100.0"; chr6_GL000251v2_alt rmsk exon 2910193 2915855 44166 + . gene_id "HERVL_6_GL000251v2_alt(b)"; transcript_id "HERVL_6_GL000251v2_alt(b)"; locus "HERVL_6_GL000251v2_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1464"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 2915856 2916309 3011 + . gene_id "HERVL_6_GL000251v2_alt(b)"; transcript_id "HERVL_6_GL000251v2_alt(b)"; locus "HERVL_6_GL000251v2_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1464"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_6_GL000251v2_alt(p) ### chr6_GL000251v2_alt rmsk gene 2940745 2946368 . - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2910"; model_cov "4109"; model_pct "78.6"; chr6_GL000251v2_alt rmsk exon 2940745 2941040 805 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "50"; repStart "-110"; chr6_GL000251v2_alt rmsk exon 2941041 2942258 3772 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3776"; repStart "-247"; chr6_GL000251v2_alt rmsk exon 2942256 2943109 1969 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "1964"; repStart "-2235"; chr6_GL000251v2_alt rmsk exon 2943562 2945032 3484 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "989"; repStart "-2816"; chr6_GL000251v2_alt rmsk exon 2945377 2945527 3484 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "988"; repFamily "ERVL"; repLeft "832"; repStart "-4238"; chr6_GL000251v2_alt rmsk exon 2945688 2945969 772 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "219"; repStart "-4705"; chr6_GL000251v2_alt rmsk exon 2946206 2946368 1137 - . gene_id "ERV316A3_6_GL000251v2_alt(p)"; transcript_id "ERV316A3_6_GL000251v2_alt(p)"; locus "ERV316A3_6_GL000251v2_alt(p)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2910"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "339"; repStart "0"; ### HUERSP2_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 3812428 3814565 . + . gene_id "HUERSP2_6_GL000251v2_alt"; transcript_id "HUERSP2_6_GL000251v2_alt"; locus "HUERSP2_6_GL000251v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0134"; model_cov "1234"; model_pct "40.0"; chr6_GL000251v2_alt rmsk exon 3812428 3813402 6288 + . gene_id "HUERSP2_6_GL000251v2_alt"; transcript_id "HUERSP2_6_GL000251v2_alt"; locus "HUERSP2_6_GL000251v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0134"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000251v2_alt rmsk exon 3813479 3813727 1522 + . gene_id "HUERSP2_6_GL000251v2_alt"; transcript_id "HUERSP2_6_GL000251v2_alt"; locus "HUERSP2_6_GL000251v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0134"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000251v2_alt rmsk exon 3813730 3814565 5028 + . gene_id "HUERSP2_6_GL000251v2_alt"; transcript_id "HUERSP2_6_GL000251v2_alt"; locus "HUERSP2_6_GL000251v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0134"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000251v2_alt(a) ### chr6_GL000251v2_alt rmsk gene 3913588 3917681 . - . gene_id "HML6_6_GL000251v2_alt(a)"; transcript_id "HML6_6_GL000251v2_alt(a)"; locus "HML6_6_GL000251v2_alt(a)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0135"; model_cov "3408"; model_pct "47.3"; chr6_GL000251v2_alt rmsk exon 3913588 3915418 23076 - . gene_id "HML6_6_GL000251v2_alt(a)"; transcript_id "HML6_6_GL000251v2_alt(a)"; locus "HML6_6_GL000251v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0135"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000251v2_alt rmsk exon 3915714 3917226 23076 - . gene_id "HML6_6_GL000251v2_alt(a)"; transcript_id "HML6_6_GL000251v2_alt(a)"; locus "HML6_6_GL000251v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0135"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000251v2_alt rmsk exon 3917261 3917681 2651 - . gene_id "HML6_6_GL000251v2_alt(a)"; transcript_id "HML6_6_GL000251v2_alt(a)"; locus "HML6_6_GL000251v2_alt(a)"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0135"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV9_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 3955851 3961282 . + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0231"; model_cov "4102"; model_pct "48.6"; chr6_GL000251v2_alt rmsk exon 3955851 3956394 3849 + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0231"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr6_GL000251v2_alt rmsk exon 3956442 3957935 11586 + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0231"; repClass "LTR"; repEnd "4562"; repFamily "ERV1"; repLeft "-3874"; repStart "3063"; chr6_GL000251v2_alt rmsk exon 3957942 3959413 11867 + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0231"; repClass "LTR"; repEnd "3209"; repFamily "ERV1"; repLeft "-5227"; repStart "1735"; chr6_GL000251v2_alt rmsk exon 3959402 3960531 9365 + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0231"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7307"; chr6_GL000251v2_alt rmsk exon 3960532 3961282 5746 + . gene_id "HERV9_6_GL000251v2_alt"; transcript_id "HERV9_6_GL000251v2_alt"; locus "HERV9_6_GL000251v2_alt"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0231"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML6_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 3975830 3981087 . - . gene_id "HML6_6_GL000251v2_alt(b)"; transcript_id "HML6_6_GL000251v2_alt(b)"; locus "HML6_6_GL000251v2_alt(b)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0136"; model_cov "4819"; model_pct "66.9"; chr6_GL000251v2_alt rmsk exon 3975830 3977013 7881 - . gene_id "HML6_6_GL000251v2_alt(b)"; transcript_id "HML6_6_GL000251v2_alt(b)"; locus "HML6_6_GL000251v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0136"; repClass "LTR"; repEnd "5113"; repFamily "ERVK"; repLeft "3924"; repStart "-2089"; chr6_GL000251v2_alt rmsk exon 3977014 3980619 25598 - . gene_id "HML6_6_GL000251v2_alt(b)"; transcript_id "HML6_6_GL000251v2_alt(b)"; locus "HML6_6_GL000251v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0136"; repClass "LTR"; repEnd "3631"; repFamily "ERVK"; repLeft "1"; repStart "-3571"; chr6_GL000251v2_alt rmsk exon 3980631 3981087 2473 - . gene_id "HML6_6_GL000251v2_alt(b)"; transcript_id "HML6_6_GL000251v2_alt(b)"; locus "HML6_6_GL000251v2_alt(b)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0136"; repClass "LTR"; repEnd "468"; repFamily "ERVK"; repLeft "1"; repStart "-16"; ### HERVFH19_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 4120277 4122108 . + . gene_id "HERVFH19_6_GL000251v2_alt"; transcript_id "HERVFH19_6_GL000251v2_alt"; locus "HERVFH19_6_GL000251v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0061"; model_cov "1375"; model_pct "17.8"; chr6_GL000251v2_alt rmsk exon 4120277 4121641 9840 + . gene_id "HERVFH19_6_GL000251v2_alt"; transcript_id "HERVFH19_6_GL000251v2_alt"; locus "HERVFH19_6_GL000251v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0061"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6344"; chr6_GL000251v2_alt rmsk exon 4121642 4122108 3437 + . gene_id "HERVFH19_6_GL000251v2_alt"; transcript_id "HERVFH19_6_GL000251v2_alt"; locus "HERVFH19_6_GL000251v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0061"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HML5_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 4461343 4468630 . + . gene_id "HML5_6_GL000251v2_alt"; transcript_id "HML5_6_GL000251v2_alt"; locus "HML5_6_GL000251v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0177"; model_cov "6805"; model_pct "99.5"; chr6_GL000251v2_alt rmsk exon 4461343 4461807 2743 + . gene_id "HML5_6_GL000251v2_alt"; transcript_id "HML5_6_GL000251v2_alt"; locus "HML5_6_GL000251v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0177"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 4461810 4468630 52174 + . gene_id "HML5_6_GL000251v2_alt"; transcript_id "HML5_6_GL000251v2_alt"; locus "HML5_6_GL000251v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0177"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### HUERSP3_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 4529519 4536796 . - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0277"; model_cov "4769"; model_pct "53.5"; chr6_GL000251v2_alt rmsk exon 4529519 4530157 4234 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000251v2_alt rmsk exon 4530158 4530432 1530 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000251v2_alt rmsk exon 4530897 4531008 486 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6_GL000251v2_alt rmsk exon 4531009 4531751 4281 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6_GL000251v2_alt rmsk exon 4531738 4532376 4165 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6_GL000251v2_alt rmsk exon 4532379 4532520 1018 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6_GL000251v2_alt rmsk exon 4532514 4533731 8461 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6_GL000251v2_alt rmsk exon 4534727 4535739 6870 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6_GL000251v2_alt rmsk exon 4535749 4536053 1476 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6_GL000251v2_alt rmsk exon 4536059 4536116 324 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6_GL000251v2_alt rmsk exon 4536162 4536796 4052 - . gene_id "HUERSP3_6_GL000251v2_alt"; transcript_id "HUERSP3_6_GL000251v2_alt"; locus "HUERSP3_6_GL000251v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0277"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_6_GL000251v2_alt(c) ### chr6_GL000251v2_alt rmsk gene 4546952 4550137 . - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0647"; model_cov "1930"; model_pct "32.5"; chr6_GL000251v2_alt rmsk exon 4546952 4547309 12347 - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0647"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1959"; repStart "-3651"; chr6_GL000251v2_alt rmsk exon 4547598 4548396 12347 - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0647"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1175"; repStart "-3988"; chr6_GL000251v2_alt rmsk exon 4548711 4549238 12347 - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0647"; repClass "LTR"; repEnd "1174"; repFamily "ERV1"; repLeft "642"; repStart "-4772"; chr6_GL000251v2_alt rmsk exon 4549555 4549682 12347 - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0647"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "522"; repStart "-5305"; chr6_GL000251v2_alt rmsk exon 4549978 4550137 3947 - . gene_id "MER41_6_GL000251v2_alt(c)"; transcript_id "MER41_6_GL000251v2_alt(c)"; locus "MER41_6_GL000251v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0647"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "361"; repStart "-5425"; ### HERVH_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 4757389 4763279 . + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1330"; model_cov "5066"; model_pct "65.7"; chr6_GL000251v2_alt rmsk exon 4757389 4758549 7164 + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1330"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6_GL000251v2_alt rmsk exon 4758550 4760387 11512 + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1330"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6_GL000251v2_alt rmsk exon 4760385 4762287 13262 + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1330"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6_GL000251v2_alt rmsk exon 4762677 4762892 1321 + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1330"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7490"; chr6_GL000251v2_alt rmsk exon 4762893 4763279 2757 + . gene_id "HERVH_6_GL000251v2_alt(b)"; transcript_id "HERVH_6_GL000251v2_alt(b)"; locus "HERVH_6_GL000251v2_alt(b)"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1330"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6_GL000251v2_alt(b) ### chr6_GL000251v2_alt rmsk gene 4763360 4766723 . - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0200"; model_cov "2117"; model_pct "30.7"; chr6_GL000251v2_alt rmsk exon 4763360 4765074 16135 - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0200"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6_GL000251v2_alt rmsk exon 4765369 4765445 16135 - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0200"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6_GL000251v2_alt rmsk exon 4765760 4765784 16135 - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0200"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6_GL000251v2_alt rmsk exon 4766086 4766275 16135 - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0200"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6_GL000251v2_alt rmsk exon 4766584 4766723 16135 - . gene_id "HARLEQUIN_6_GL000251v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000251v2_alt(b)"; locus "HARLEQUIN_6_GL000251v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0200"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2036"; repStart "-4726"; ### HERVS71_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 31779 42102 . - . gene_id "HERVS71_6_GL000252v2_alt"; transcript_id "HERVS71_6_GL000252v2_alt"; locus "HERVS71_6_GL000252v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0067"; model_cov "8932"; model_pct "99.5"; chr6_GL000252v2_alt rmsk exon 31779 32320 3660 - . gene_id "HERVS71_6_GL000252v2_alt"; transcript_id "HERVS71_6_GL000252v2_alt"; locus "HERVS71_6_GL000252v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0067"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000252v2_alt rmsk exon 32331 39549 60739 - . gene_id "HERVS71_6_GL000252v2_alt"; transcript_id "HERVS71_6_GL000252v2_alt"; locus "HERVS71_6_GL000252v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0067"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000252v2_alt rmsk exon 39842 41557 60739 - . gene_id "HERVS71_6_GL000252v2_alt"; transcript_id "HERVS71_6_GL000252v2_alt"; locus "HERVS71_6_GL000252v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0067"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000252v2_alt rmsk exon 41560 42102 3671 - . gene_id "HERVS71_6_GL000252v2_alt"; transcript_id "HERVS71_6_GL000252v2_alt"; locus "HERVS71_6_GL000252v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0067"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### MER41_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 408080 408864 . - . gene_id "MER41_6_GL000252v2_alt(a)"; transcript_id "MER41_6_GL000252v2_alt(a)"; locus "MER41_6_GL000252v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0648"; model_cov "786"; model_pct "13.2"; chr6_GL000252v2_alt rmsk exon 408080 408864 5165 - . gene_id "MER41_6_GL000252v2_alt(a)"; transcript_id "MER41_6_GL000252v2_alt(a)"; locus "MER41_6_GL000252v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0648"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 408870 410107 . + . gene_id "MER41_6_GL000252v2_alt(b)"; transcript_id "MER41_6_GL000252v2_alt(b)"; locus "MER41_6_GL000252v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0649"; model_cov "745"; model_pct "12.5"; chr6_GL000252v2_alt rmsk exon 408870 409601 4945 + . gene_id "MER41_6_GL000252v2_alt(b)"; transcript_id "MER41_6_GL000252v2_alt(b)"; locus "MER41_6_GL000252v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0649"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000252v2_alt rmsk exon 409602 410107 2684 + . gene_id "MER41_6_GL000252v2_alt(b)"; transcript_id "MER41_6_GL000252v2_alt(b)"; locus "MER41_6_GL000252v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0649"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 474757 478154 . + . gene_id "ERV316A3_6_GL000252v2_alt(a)"; transcript_id "ERV316A3_6_GL000252v2_alt(a)"; locus "ERV316A3_6_GL000252v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2912"; model_cov "2675"; model_pct "51.2"; chr6_GL000252v2_alt rmsk exon 474757 475470 1880 + . gene_id "ERV316A3_6_GL000252v2_alt(a)"; transcript_id "ERV316A3_6_GL000252v2_alt(a)"; locus "ERV316A3_6_GL000252v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2912"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2542"; chr6_GL000252v2_alt rmsk exon 475538 477177 3971 + . gene_id "ERV316A3_6_GL000252v2_alt(a)"; transcript_id "ERV316A3_6_GL000252v2_alt(a)"; locus "ERV316A3_6_GL000252v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2912"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "3020"; chr6_GL000252v2_alt rmsk exon 477201 477473 661 + . gene_id "ERV316A3_6_GL000252v2_alt(a)"; transcript_id "ERV316A3_6_GL000252v2_alt(a)"; locus "ERV316A3_6_GL000252v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2912"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000252v2_alt rmsk exon 477705 478154 1205 + . gene_id "ERV316A3_6_GL000252v2_alt(a)"; transcript_id "ERV316A3_6_GL000252v2_alt(a)"; locus "ERV316A3_6_GL000252v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2912"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 511085 518416 . - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1331"; model_cov "6219"; model_pct "80.6"; chr6_GL000252v2_alt rmsk exon 511085 511523 2405 - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1331"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000252v2_alt rmsk exon 511524 512247 4641 - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1331"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6_GL000252v2_alt rmsk exon 512242 517381 15615 - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1331"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "791"; repStart "-1878"; chr6_GL000252v2_alt rmsk exon 517437 517974 968 - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1331"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6_GL000252v2_alt rmsk exon 517975 518416 2256 - . gene_id "HERVH_6_GL000252v2_alt(a)"; transcript_id "HERVH_6_GL000252v2_alt(a)"; locus "HERVH_6_GL000252v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1331"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### ERV316A3_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 669876 671460 . + . gene_id "ERV316A3_6_GL000252v2_alt(b)"; transcript_id "ERV316A3_6_GL000252v2_alt(b)"; locus "ERV316A3_6_GL000252v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2913"; model_cov "1658"; model_pct "31.7"; chr6_GL000252v2_alt rmsk exon 669876 671460 3274 + . gene_id "ERV316A3_6_GL000252v2_alt(b)"; transcript_id "ERV316A3_6_GL000252v2_alt(b)"; locus "ERV316A3_6_GL000252v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2913"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-2833"; repStart "735"; ### MER4_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 787380 792923 . - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1015"; model_cov "3139"; model_pct "47.6"; chr6_GL000252v2_alt rmsk exon 787380 789032 8662 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1015"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000252v2_alt rmsk exon 789329 789936 8662 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1015"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000252v2_alt rmsk exon 789924 790000 1730 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1015"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000252v2_alt rmsk exon 790524 791367 2040 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1015"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000252v2_alt rmsk exon 792419 792500 482 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1015"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000252v2_alt rmsk exon 792504 792923 2498 - . gene_id "MER4_6_GL000252v2_alt"; transcript_id "MER4_6_GL000252v2_alt"; locus "MER4_6_GL000252v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1015"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000252v2_alt(c) ### chr6_GL000252v2_alt rmsk gene 845180 849666 . - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2914"; model_cov "1992"; model_pct "38.1"; chr6_GL000252v2_alt rmsk exon 845180 845889 3412 - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2914"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6_GL000252v2_alt rmsk exon 846414 847032 3412 - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2914"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2789"; repStart "-1847"; chr6_GL000252v2_alt rmsk exon 847347 847530 566 - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2914"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000252v2_alt rmsk exon 848803 848953 793 - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2914"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000252v2_alt rmsk exon 849249 849666 890 - . gene_id "ERV316A3_6_GL000252v2_alt(c)"; transcript_id "ERV316A3_6_GL000252v2_alt(c)"; locus "ERV316A3_6_GL000252v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2914"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 949223 950020 . + . gene_id "HERVL40_6_GL000252v2_alt"; transcript_id "HERVL40_6_GL000252v2_alt"; locus "HERVL40_6_GL000252v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0497"; model_cov "718"; model_pct "13.0"; chr6_GL000252v2_alt rmsk exon 949223 949686 1156 + . gene_id "HERVL40_6_GL000252v2_alt"; transcript_id "HERVL40_6_GL000252v2_alt"; locus "HERVL40_6_GL000252v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0497"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "-4697"; repStart "415"; chr6_GL000252v2_alt rmsk exon 949760 950020 593 + . gene_id "HERVL40_6_GL000252v2_alt"; transcript_id "HERVL40_6_GL000252v2_alt"; locus "HERVL40_6_GL000252v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0497"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "924"; ### ERV316A3_6_GL000252v2_alt(d) ### chr6_GL000252v2_alt rmsk gene 976398 980714 . + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2915"; model_cov "3967"; model_pct "75.9"; chr6_GL000252v2_alt rmsk exon 976398 976492 335 + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2915"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000252v2_alt rmsk exon 976517 978217 3692 + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2915"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-2708"; repStart "832"; chr6_GL000252v2_alt rmsk exon 978362 979115 1435 + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2915"; repClass "LTR"; repEnd "3053"; repFamily "ERVL"; repLeft "-2173"; repStart "2079"; chr6_GL000252v2_alt rmsk exon 979117 980332 3653 + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2915"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000252v2_alt rmsk exon 980336 980714 1035 + . gene_id "ERV316A3_6_GL000252v2_alt(d)"; transcript_id "ERV316A3_6_GL000252v2_alt(d)"; locus "ERV316A3_6_GL000252v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2915"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000252v2_alt(e) ### chr6_GL000252v2_alt rmsk gene 1030820 1035949 . + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2916"; model_cov "3976"; model_pct "76.1"; chr6_GL000252v2_alt rmsk exon 1030820 1031229 1188 + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2916"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr6_GL000252v2_alt rmsk exon 1031503 1031817 740 + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2916"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-4662"; repStart "233"; chr6_GL000252v2_alt rmsk exon 1031938 1034369 4621 + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2916"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000252v2_alt rmsk exon 1034376 1035575 3111 + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2916"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000252v2_alt rmsk exon 1035578 1035949 1101 + . gene_id "ERV316A3_6_GL000252v2_alt(e)"; transcript_id "ERV316A3_6_GL000252v2_alt(e)"; locus "ERV316A3_6_GL000252v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2916"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000252v2_alt(f) ### chr6_GL000252v2_alt rmsk gene 1056113 1057336 . + . gene_id "ERV316A3_6_GL000252v2_alt(f)"; transcript_id "ERV316A3_6_GL000252v2_alt(f)"; locus "ERV316A3_6_GL000252v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2917"; model_cov "862"; model_pct "16.5"; chr6_GL000252v2_alt rmsk exon 1056113 1056951 1940 + . gene_id "ERV316A3_6_GL000252v2_alt(f)"; transcript_id "ERV316A3_6_GL000252v2_alt(f)"; locus "ERV316A3_6_GL000252v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2917"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000252v2_alt rmsk exon 1056955 1057336 1317 + . gene_id "ERV316A3_6_GL000252v2_alt(f)"; transcript_id "ERV316A3_6_GL000252v2_alt(f)"; locus "ERV316A3_6_GL000252v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2917"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000252v2_alt(g) ### chr6_GL000252v2_alt rmsk gene 1078770 1081509 . + . gene_id "ERV316A3_6_GL000252v2_alt(g)"; transcript_id "ERV316A3_6_GL000252v2_alt(g)"; locus "ERV316A3_6_GL000252v2_alt(g)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2918"; model_cov "2330"; model_pct "44.6"; chr6_GL000252v2_alt rmsk exon 1078770 1079903 2811 + . gene_id "ERV316A3_6_GL000252v2_alt(g)"; transcript_id "ERV316A3_6_GL000252v2_alt(g)"; locus "ERV316A3_6_GL000252v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2918"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000252v2_alt rmsk exon 1079904 1081113 3040 + . gene_id "ERV316A3_6_GL000252v2_alt(g)"; transcript_id "ERV316A3_6_GL000252v2_alt(g)"; locus "ERV316A3_6_GL000252v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2918"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000252v2_alt rmsk exon 1081117 1081509 1224 + . gene_id "ERV316A3_6_GL000252v2_alt(g)"; transcript_id "ERV316A3_6_GL000252v2_alt(g)"; locus "ERV316A3_6_GL000252v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2918"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000252v2_alt(h) ### chr6_GL000252v2_alt rmsk gene 1131412 1136887 . + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2919"; model_cov "4204"; model_pct "80.4"; chr6_GL000252v2_alt rmsk exon 1131412 1131849 1299 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000252v2_alt rmsk exon 1131852 1132395 390 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4430"; repStart "233"; chr6_GL000252v2_alt rmsk exon 1132531 1134385 5391 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000252v2_alt rmsk exon 1134679 1135284 5391 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000252v2_alt rmsk exon 1135285 1136489 3460 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000252v2_alt rmsk exon 1136500 1136887 1161 + . gene_id "ERV316A3_6_GL000252v2_alt(h)"; transcript_id "ERV316A3_6_GL000252v2_alt(h)"; locus "ERV316A3_6_GL000252v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2919"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000252v2_alt(i) ### chr6_GL000252v2_alt rmsk gene 1149329 1150750 . + . gene_id "ERV316A3_6_GL000252v2_alt(i)"; transcript_id "ERV316A3_6_GL000252v2_alt(i)"; locus "ERV316A3_6_GL000252v2_alt(i)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2920"; model_cov "1427"; model_pct "27.3"; chr6_GL000252v2_alt rmsk exon 1149329 1149592 377 + . gene_id "ERV316A3_6_GL000252v2_alt(i)"; transcript_id "ERV316A3_6_GL000252v2_alt(i)"; locus "ERV316A3_6_GL000252v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2920"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "1003"; chr6_GL000252v2_alt rmsk exon 1149591 1150750 2915 + . gene_id "ERV316A3_6_GL000252v2_alt(i)"; transcript_id "ERV316A3_6_GL000252v2_alt(i)"; locus "ERV316A3_6_GL000252v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2920"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000252v2_alt(j) ### chr6_GL000252v2_alt rmsk gene 1169940 1175409 . + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2921"; model_cov "4203"; model_pct "80.4"; chr6_GL000252v2_alt rmsk exon 1169940 1170382 1165 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000252v2_alt rmsk exon 1170394 1170957 707 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "16"; chr6_GL000252v2_alt rmsk exon 1171067 1173539 5214 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000252v2_alt rmsk exon 1173540 1174109 1429 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000252v2_alt rmsk exon 1174402 1175025 1565 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "4393"; chr6_GL000252v2_alt rmsk exon 1175028 1175409 1282 + . gene_id "ERV316A3_6_GL000252v2_alt(j)"; transcript_id "ERV316A3_6_GL000252v2_alt(j)"; locus "ERV316A3_6_GL000252v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2921"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000252v2_alt(k) ### chr6_GL000252v2_alt rmsk gene 1202488 1205990 . + . gene_id "ERV316A3_6_GL000252v2_alt(k)"; transcript_id "ERV316A3_6_GL000252v2_alt(k)"; locus "ERV316A3_6_GL000252v2_alt(k)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2924"; model_cov "3062"; model_pct "58.6"; chr6_GL000252v2_alt rmsk exon 1202488 1204312 3575 + . gene_id "ERV316A3_6_GL000252v2_alt(k)"; transcript_id "ERV316A3_6_GL000252v2_alt(k)"; locus "ERV316A3_6_GL000252v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2924"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000252v2_alt rmsk exon 1204321 1205167 1910 + . gene_id "ERV316A3_6_GL000252v2_alt(k)"; transcript_id "ERV316A3_6_GL000252v2_alt(k)"; locus "ERV316A3_6_GL000252v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2924"; repClass "LTR"; repEnd "4640"; repFamily "ERVL"; repLeft "-586"; repStart "3783"; chr6_GL000252v2_alt rmsk exon 1205203 1205593 1910 + . gene_id "ERV316A3_6_GL000252v2_alt(k)"; transcript_id "ERV316A3_6_GL000252v2_alt(k)"; locus "ERV316A3_6_GL000252v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2924"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4641"; chr6_GL000252v2_alt rmsk exon 1205602 1205990 1276 + . gene_id "ERV316A3_6_GL000252v2_alt(k)"; transcript_id "ERV316A3_6_GL000252v2_alt(k)"; locus "ERV316A3_6_GL000252v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2924"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 1218030 1225907 . + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0087"; model_cov "3812"; model_pct "50.2"; chr6_GL000252v2_alt rmsk exon 1218030 1218476 2794 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000252v2_alt rmsk exon 1219812 1220458 3851 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; chr6_GL000252v2_alt rmsk exon 1221937 1222662 5130 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000252v2_alt rmsk exon 1222960 1223087 5130 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000252v2_alt rmsk exon 1223104 1223320 1314 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "5472"; repFamily "ERV1"; repLeft "-2118"; repStart "5243"; chr6_GL000252v2_alt rmsk exon 1223468 1224370 4764 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000252v2_alt rmsk exon 1224571 1225304 3963 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000252v2_alt rmsk exon 1225545 1225907 1983 + . gene_id "HERVP71A_6_GL000252v2_alt"; transcript_id "HERVP71A_6_GL000252v2_alt"; locus "HERVP71A_6_GL000252v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0087"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000252v2_alt(l) ### chr6_GL000252v2_alt rmsk gene 1253489 1258825 . + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2925"; model_cov "4021"; model_pct "76.9"; chr6_GL000252v2_alt rmsk exon 1253489 1253932 1377 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000252v2_alt rmsk exon 1254171 1254291 406 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "219"; chr6_GL000252v2_alt rmsk exon 1254309 1254545 411 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "636"; repFamily "ERVL"; repLeft "-4590"; repStart "372"; chr6_GL000252v2_alt rmsk exon 1254624 1256208 5298 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000252v2_alt rmsk exon 1256523 1257394 5298 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6_GL000252v2_alt rmsk exon 1257395 1258598 3129 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000252v2_alt rmsk exon 1258612 1258825 776 + . gene_id "ERV316A3_6_GL000252v2_alt(l)"; transcript_id "ERV316A3_6_GL000252v2_alt(l)"; locus "ERV316A3_6_GL000252v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2925"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6_GL000252v2_alt(m) ### chr6_GL000252v2_alt rmsk gene 1531918 1533333 . + . gene_id "ERV316A3_6_GL000252v2_alt(m)"; transcript_id "ERV316A3_6_GL000252v2_alt(m)"; locus "ERV316A3_6_GL000252v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2926"; model_cov "1396"; model_pct "26.7"; chr6_GL000252v2_alt rmsk exon 1531918 1533333 2397 + . gene_id "ERV316A3_6_GL000252v2_alt(m)"; transcript_id "ERV316A3_6_GL000252v2_alt(m)"; locus "ERV316A3_6_GL000252v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2926"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 1635767 1636391 . - . gene_id "ERVLE_6_GL000252v2_alt(a)"; transcript_id "ERVLE_6_GL000252v2_alt(a)"; locus "ERVLE_6_GL000252v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3826"; model_cov "653"; model_pct "11.5"; chr6_GL000252v2_alt rmsk exon 1635767 1636391 1319 - . gene_id "ERVLE_6_GL000252v2_alt(a)"; transcript_id "ERVLE_6_GL000252v2_alt(a)"; locus "ERVLE_6_GL000252v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3826"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### HERVL_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 2222678 2228139 . + . gene_id "HERVL_6_GL000252v2_alt"; transcript_id "HERVL_6_GL000252v2_alt"; locus "HERVL_6_GL000252v2_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1465"; model_cov "4774"; model_pct "84.4"; chr6_GL000252v2_alt rmsk exon 2222678 2223814 38392 + . gene_id "HERVL_6_GL000252v2_alt"; transcript_id "HERVL_6_GL000252v2_alt"; locus "HERVL_6_GL000252v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1465"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6_GL000252v2_alt rmsk exon 2224116 2227730 38392 + . gene_id "HERVL_6_GL000252v2_alt"; transcript_id "HERVL_6_GL000252v2_alt"; locus "HERVL_6_GL000252v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1465"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6_GL000252v2_alt rmsk exon 2227731 2228139 3163 + . gene_id "HERVL_6_GL000252v2_alt"; transcript_id "HERVL_6_GL000252v2_alt"; locus "HERVL_6_GL000252v2_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1465"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 2293614 2297645 . - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3828"; model_cov "2716"; model_pct "47.9"; chr6_GL000252v2_alt rmsk exon 2293614 2294699 3482 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000252v2_alt rmsk exon 2294744 2294890 376 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000252v2_alt rmsk exon 2294950 2294971 364 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "2003"; repFamily "ERVL"; repLeft "1985"; repStart "-3664"; chr6_GL000252v2_alt rmsk exon 2295281 2296136 1349 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "1984"; repFamily "ERVL"; repLeft "993"; repStart "-3683"; chr6_GL000252v2_alt rmsk exon 2296436 2296473 1001 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "756"; repStart "-4878"; chr6_GL000252v2_alt rmsk exon 2297262 2297645 1001 - . gene_id "ERVLE_6_GL000252v2_alt(b)"; transcript_id "ERVLE_6_GL000252v2_alt(b)"; locus "ERVLE_6_GL000252v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3828"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "362"; repStart "-4912"; ### HARLEQUIN_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 2441208 2446109 . - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0201"; model_cov "4515"; model_pct "65.5"; chr6_GL000252v2_alt rmsk exon 2441208 2441778 3719 - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0201"; repClass "LTR"; repEnd "6472"; repFamily "ERV1"; repLeft "5886"; repStart "-424"; chr6_GL000252v2_alt rmsk exon 2441773 2443789 14778 - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0201"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000252v2_alt rmsk exon 2443789 2444761 7058 - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0201"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000252v2_alt rmsk exon 2444748 2445630 6564 - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0201"; repClass "LTR"; repEnd "893"; repFamily "ERV1"; repLeft "1"; repStart "-6003"; chr6_GL000252v2_alt rmsk exon 2445631 2446109 3930 - . gene_id "HARLEQUIN_6_GL000252v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(a)"; locus "HARLEQUIN_6_GL000252v2_alt(a)"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0201"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 2485070 2487782 . - . gene_id "HERV3_6_GL000252v2_alt"; transcript_id "HERV3_6_GL000252v2_alt"; locus "HERV3_6_GL000252v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0106"; model_cov "1870"; model_pct "22.2"; chr6_GL000252v2_alt rmsk exon 2485070 2485916 8657 - . gene_id "HERV3_6_GL000252v2_alt"; transcript_id "HERV3_6_GL000252v2_alt"; locus "HERV3_6_GL000252v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0106"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6502"; repStart "-1086"; chr6_GL000252v2_alt rmsk exon 2486219 2487198 8657 - . gene_id "HERV3_6_GL000252v2_alt"; transcript_id "HERV3_6_GL000252v2_alt"; locus "HERV3_6_GL000252v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0106"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6_GL000252v2_alt rmsk exon 2487200 2487320 824 - . gene_id "HERV3_6_GL000252v2_alt"; transcript_id "HERV3_6_GL000252v2_alt"; locus "HERV3_6_GL000252v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0106"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000252v2_alt rmsk exon 2487610 2487782 824 - . gene_id "HERV3_6_GL000252v2_alt"; transcript_id "HERV3_6_GL000252v2_alt"; locus "HERV3_6_GL000252v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0106"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 2491298 2495415 . - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0279"; model_cov "3538"; model_pct "58.8"; chr6_GL000252v2_alt rmsk exon 2491298 2491411 882 - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0279"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000252v2_alt rmsk exon 2491414 2491938 4006 - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0279"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4583"; repStart "-916"; chr6_GL000252v2_alt rmsk exon 2491926 2492155 1791 - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0279"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000252v2_alt rmsk exon 2492157 2494889 21382 - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0279"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000252v2_alt rmsk exon 2494902 2495415 4273 - . gene_id "HML3_6_GL000252v2_alt"; transcript_id "HML3_6_GL000252v2_alt"; locus "HML3_6_GL000252v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0279"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000252v2_alt(a) ### chr6_GL000252v2_alt rmsk gene 2502805 2504337 . - . gene_id "ERVLB4_6_GL000252v2_alt(a)"; transcript_id "ERVLB4_6_GL000252v2_alt(a)"; locus "ERVLB4_6_GL000252v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1981"; model_cov "867"; model_pct "15.2"; chr6_GL000252v2_alt rmsk exon 2502805 2503137 1373 - . gene_id "ERVLB4_6_GL000252v2_alt(a)"; transcript_id "ERVLB4_6_GL000252v2_alt(a)"; locus "ERVLB4_6_GL000252v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1981"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000252v2_alt rmsk exon 2503141 2503572 3851 - . gene_id "ERVLB4_6_GL000252v2_alt(a)"; transcript_id "ERVLB4_6_GL000252v2_alt(a)"; locus "ERVLB4_6_GL000252v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1981"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000252v2_alt rmsk exon 2503891 2504337 3851 - . gene_id "ERVLB4_6_GL000252v2_alt(a)"; transcript_id "ERVLB4_6_GL000252v2_alt(a)"; locus "ERVLB4_6_GL000252v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1981"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERVLE_6_GL000252v2_alt(c) ### chr6_GL000252v2_alt rmsk gene 2549210 2549845 . + . gene_id "ERVLE_6_GL000252v2_alt(c)"; transcript_id "ERVLE_6_GL000252v2_alt(c)"; locus "ERVLE_6_GL000252v2_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3829"; model_cov "643"; model_pct "11.3"; chr6_GL000252v2_alt rmsk exon 2549210 2549587 816 + . gene_id "ERVLE_6_GL000252v2_alt(c)"; transcript_id "ERVLE_6_GL000252v2_alt(c)"; locus "ERVLE_6_GL000252v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3829"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2087"; repStart "3173"; chr6_GL000252v2_alt rmsk exon 2549613 2549845 450 + . gene_id "ERVLE_6_GL000252v2_alt(c)"; transcript_id "ERVLE_6_GL000252v2_alt(c)"; locus "ERVLE_6_GL000252v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3829"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1782"; repStart "3649"; ### ERV316A3_6_GL000252v2_alt(n) ### chr6_GL000252v2_alt rmsk gene 2558300 2559742 . + . gene_id "ERV316A3_6_GL000252v2_alt(n)"; transcript_id "ERV316A3_6_GL000252v2_alt(n)"; locus "ERV316A3_6_GL000252v2_alt(n)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2927"; model_cov "1471"; model_pct "28.1"; chr6_GL000252v2_alt rmsk exon 2558300 2559742 3009 + . gene_id "ERV316A3_6_GL000252v2_alt(n)"; transcript_id "ERV316A3_6_GL000252v2_alt(n)"; locus "ERV316A3_6_GL000252v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2927"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 2568992 2570008 . - . gene_id "ERVLB4_6_GL000252v2_alt(b)"; transcript_id "ERVLB4_6_GL000252v2_alt(b)"; locus "ERVLB4_6_GL000252v2_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1982"; model_cov "673"; model_pct "11.8"; chr6_GL000252v2_alt rmsk exon 2568992 2569256 2847 - . gene_id "ERVLB4_6_GL000252v2_alt(b)"; transcript_id "ERVLB4_6_GL000252v2_alt(b)"; locus "ERVLB4_6_GL000252v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1982"; repClass "LTR"; repEnd "5545"; repFamily "ERVL"; repLeft "5295"; repStart "-169"; chr6_GL000252v2_alt rmsk exon 2569575 2570008 2847 - . gene_id "ERVLB4_6_GL000252v2_alt(b)"; transcript_id "ERVLB4_6_GL000252v2_alt(b)"; locus "ERVLB4_6_GL000252v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1982"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4871"; repStart "-420"; ### HERVKC4_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3232465 3238826 . - . gene_id "HERVKC4_6_GL000252v2_alt"; transcript_id "HERVKC4_6_GL000252v2_alt"; locus "HERVKC4_6_GL000252v2_alt"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0027"; model_cov "5261"; model_pct "100.0"; chr6_GL000252v2_alt rmsk exon 3232465 3233014 4217 - . gene_id "HERVKC4_6_GL000252v2_alt"; transcript_id "HERVKC4_6_GL000252v2_alt"; locus "HERVKC4_6_GL000252v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0027"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000252v2_alt rmsk exon 3233015 3238278 42528 - . gene_id "HERVKC4_6_GL000252v2_alt"; transcript_id "HERVKC4_6_GL000252v2_alt"; locus "HERVKC4_6_GL000252v2_alt"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0027"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000252v2_alt rmsk exon 3238279 3238826 5162 - . gene_id "HERVKC4_6_GL000252v2_alt"; transcript_id "HERVKC4_6_GL000252v2_alt"; locus "HERVKC4_6_GL000252v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0027"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3615421 3617558 . + . gene_id "HUERSP2_6_GL000252v2_alt"; transcript_id "HUERSP2_6_GL000252v2_alt"; locus "HUERSP2_6_GL000252v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0135"; model_cov "1234"; model_pct "40.0"; chr6_GL000252v2_alt rmsk exon 3615421 3616395 6812 + . gene_id "HUERSP2_6_GL000252v2_alt"; transcript_id "HUERSP2_6_GL000252v2_alt"; locus "HUERSP2_6_GL000252v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0135"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000252v2_alt rmsk exon 3616472 3616720 1692 + . gene_id "HUERSP2_6_GL000252v2_alt"; transcript_id "HUERSP2_6_GL000252v2_alt"; locus "HUERSP2_6_GL000252v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0135"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000252v2_alt rmsk exon 3616723 3617558 5346 + . gene_id "HUERSP2_6_GL000252v2_alt"; transcript_id "HUERSP2_6_GL000252v2_alt"; locus "HUERSP2_6_GL000252v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0135"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3715762 3719865 . - . gene_id "HML6_6_GL000252v2_alt"; transcript_id "HML6_6_GL000252v2_alt"; locus "HML6_6_GL000252v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0137"; model_cov "3408"; model_pct "47.3"; chr6_GL000252v2_alt rmsk exon 3715762 3717602 23107 - . gene_id "HML6_6_GL000252v2_alt"; transcript_id "HML6_6_GL000252v2_alt"; locus "HML6_6_GL000252v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0137"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000252v2_alt rmsk exon 3717901 3719410 23107 - . gene_id "HML6_6_GL000252v2_alt"; transcript_id "HML6_6_GL000252v2_alt"; locus "HML6_6_GL000252v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0137"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000252v2_alt rmsk exon 3719445 3719865 2628 - . gene_id "HML6_6_GL000252v2_alt"; transcript_id "HML6_6_GL000252v2_alt"; locus "HML6_6_GL000252v2_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0137"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3771979 3777204 . + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0143"; model_cov "3007"; model_pct "49.3"; chr6_GL000252v2_alt rmsk exon 3771979 3772304 2579 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "6"; chr6_GL000252v2_alt rmsk exon 3772307 3772666 2351 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "-5735"; repStart "3"; chr6_GL000252v2_alt rmsk exon 3774245 3775413 9745 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "2997"; repFamily "ERVK"; repLeft "-3099"; repStart "1827"; chr6_GL000252v2_alt rmsk exon 3775413 3776549 8954 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4414"; chr6_GL000252v2_alt rmsk exon 3776529 3776847 2353 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "5997"; repFamily "ERVK"; repLeft "-99"; repStart "5656"; chr6_GL000252v2_alt rmsk exon 3776867 3777204 2769 + . gene_id "HML1_6_GL000252v2_alt"; transcript_id "HML1_6_GL000252v2_alt"; locus "HML1_6_GL000252v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0143"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3807663 3810543 . + . gene_id "HERV9_6_GL000252v2_alt"; transcript_id "HERV9_6_GL000252v2_alt"; locus "HERV9_6_GL000252v2_alt"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0232"; model_cov "1242"; model_pct "14.7"; chr6_GL000252v2_alt rmsk exon 3807663 3808584 10055 + . gene_id "HERV9_6_GL000252v2_alt"; transcript_id "HERV9_6_GL000252v2_alt"; locus "HERV9_6_GL000252v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0232"; repClass "LTR"; repEnd "6498"; repFamily "ERV1"; repLeft "-1938"; repStart "5578"; chr6_GL000252v2_alt rmsk exon 3810216 3810543 10055 + . gene_id "HERV9_6_GL000252v2_alt"; transcript_id "HERV9_6_GL000252v2_alt"; locus "HERV9_6_GL000252v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0232"; repClass "LTR"; repEnd "6821"; repFamily "ERV1"; repLeft "-1615"; repStart "6499"; ### HUERSP3_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3927366 3929898 . - . gene_id "HUERSP3_6_GL000252v2_alt"; transcript_id "HUERSP3_6_GL000252v2_alt"; locus "HUERSP3_6_GL000252v2_alt"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0278"; model_cov "1008"; model_pct "11.3"; chr6_GL000252v2_alt rmsk exon 3927366 3927974 3607 - . gene_id "HUERSP3_6_GL000252v2_alt"; transcript_id "HUERSP3_6_GL000252v2_alt"; locus "HUERSP3_6_GL000252v2_alt"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0278"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "23"; repStart "0"; chr6_GL000252v2_alt rmsk exon 3928270 3928302 3607 - . gene_id "HUERSP3_6_GL000252v2_alt"; transcript_id "HUERSP3_6_GL000252v2_alt"; locus "HUERSP3_6_GL000252v2_alt"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0278"; repClass "LTR"; repEnd "22"; repFamily "ERV1"; repLeft "2"; repStart "-706"; chr6_GL000252v2_alt rmsk exon 3928305 3928596 1513 - . gene_id "HUERSP3_6_GL000252v2_alt"; transcript_id "HUERSP3_6_GL000252v2_alt"; locus "HUERSP3_6_GL000252v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0278"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000252v2_alt rmsk exon 3928790 3929898 4624 - . gene_id "HUERSP3_6_GL000252v2_alt"; transcript_id "HUERSP3_6_GL000252v2_alt"; locus "HUERSP3_6_GL000252v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0278"; repClass "LTR"; repEnd "7028"; repFamily "ERV1"; repLeft "6238"; repStart "-1891"; ### HERVFH19_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 3951570 3953403 . + . gene_id "HERVFH19_6_GL000252v2_alt"; transcript_id "HERVFH19_6_GL000252v2_alt"; locus "HERVFH19_6_GL000252v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0062"; model_cov "1375"; model_pct "17.8"; chr6_GL000252v2_alt rmsk exon 3951570 3952933 9881 + . gene_id "HERVFH19_6_GL000252v2_alt"; transcript_id "HERVFH19_6_GL000252v2_alt"; locus "HERVFH19_6_GL000252v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0062"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6344"; chr6_GL000252v2_alt rmsk exon 3952934 3953403 3419 + . gene_id "HERVFH19_6_GL000252v2_alt"; transcript_id "HERVFH19_6_GL000252v2_alt"; locus "HERVFH19_6_GL000252v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0062"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_6_GL000252v2_alt ### chr6_GL000252v2_alt rmsk gene 4292762 4300049 . + . gene_id "HML5_6_GL000252v2_alt"; transcript_id "HML5_6_GL000252v2_alt"; locus "HML5_6_GL000252v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0179"; model_cov "6805"; model_pct "99.5"; chr6_GL000252v2_alt rmsk exon 4292762 4293226 2771 + . gene_id "HML5_6_GL000252v2_alt"; transcript_id "HML5_6_GL000252v2_alt"; locus "HML5_6_GL000252v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0179"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000252v2_alt rmsk exon 4293229 4300049 52287 + . gene_id "HML5_6_GL000252v2_alt"; transcript_id "HML5_6_GL000252v2_alt"; locus "HML5_6_GL000252v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0179"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### MER41_6_GL000252v2_alt(c) ### chr6_GL000252v2_alt rmsk gene 4378982 4382145 . - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0650"; model_cov "1930"; model_pct "32.5"; chr6_GL000252v2_alt rmsk exon 4378982 4379339 12356 - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0650"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1959"; repStart "-3651"; chr6_GL000252v2_alt rmsk exon 4379628 4380426 12356 - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0650"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1175"; repStart "-3988"; chr6_GL000252v2_alt rmsk exon 4380729 4381254 12356 - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0650"; repClass "LTR"; repEnd "1174"; repFamily "ERV1"; repLeft "632"; repStart "-4772"; chr6_GL000252v2_alt rmsk exon 4381574 4381691 12356 - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0650"; repClass "LTR"; repEnd "631"; repFamily "ERV1"; repLeft "522"; repStart "-5315"; chr6_GL000252v2_alt rmsk exon 4381986 4382145 12356 - . gene_id "MER41_6_GL000252v2_alt(c)"; transcript_id "MER41_6_GL000252v2_alt(c)"; locus "MER41_6_GL000252v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0650"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "361"; repStart "-5425"; ### HERVH_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 4589418 4595308 . + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1332"; model_cov "5066"; model_pct "65.7"; chr6_GL000252v2_alt rmsk exon 4589418 4590578 7232 + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1332"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6_GL000252v2_alt rmsk exon 4590579 4592416 11587 + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1332"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6_GL000252v2_alt rmsk exon 4592414 4594316 13308 + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1332"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6_GL000252v2_alt rmsk exon 4594706 4594921 1325 + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1332"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7490"; chr6_GL000252v2_alt rmsk exon 4594922 4595308 2589 + . gene_id "HERVH_6_GL000252v2_alt(b)"; transcript_id "HERVH_6_GL000252v2_alt(b)"; locus "HERVH_6_GL000252v2_alt(b)"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1332"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6_GL000252v2_alt(b) ### chr6_GL000252v2_alt rmsk gene 4595389 4598752 . - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0202"; model_cov "2117"; model_pct "30.7"; chr6_GL000252v2_alt rmsk exon 4595389 4597103 16092 - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0202"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6_GL000252v2_alt rmsk exon 4597398 4597474 16092 - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0202"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6_GL000252v2_alt rmsk exon 4597789 4597813 16092 - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0202"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6_GL000252v2_alt rmsk exon 4598115 4598304 16092 - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0202"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6_GL000252v2_alt rmsk exon 4598613 4598752 16092 - . gene_id "HARLEQUIN_6_GL000252v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000252v2_alt(b)"; locus "HARLEQUIN_6_GL000252v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0202"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2036"; repStart "-4726"; ### HERVS71_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 31752 42075 . - . gene_id "HERVS71_6_GL000253v2_alt"; transcript_id "HERVS71_6_GL000253v2_alt"; locus "HERVS71_6_GL000253v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0068"; model_cov "8932"; model_pct "99.5"; chr6_GL000253v2_alt rmsk exon 31752 32293 3660 - . gene_id "HERVS71_6_GL000253v2_alt"; transcript_id "HERVS71_6_GL000253v2_alt"; locus "HERVS71_6_GL000253v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0068"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000253v2_alt rmsk exon 32304 39522 60739 - . gene_id "HERVS71_6_GL000253v2_alt"; transcript_id "HERVS71_6_GL000253v2_alt"; locus "HERVS71_6_GL000253v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0068"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000253v2_alt rmsk exon 39815 41530 60739 - . gene_id "HERVS71_6_GL000253v2_alt"; transcript_id "HERVS71_6_GL000253v2_alt"; locus "HERVS71_6_GL000253v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0068"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000253v2_alt rmsk exon 41533 42075 3671 - . gene_id "HERVS71_6_GL000253v2_alt"; transcript_id "HERVS71_6_GL000253v2_alt"; locus "HERVS71_6_GL000253v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0068"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 133831 140121 . - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; category "oneside"; intModel "LTR57-int"; locid "LTR57-int_0212"; model_cov "3759"; model_pct "70.4"; chr6_GL000253v2_alt rmsk exon 133831 134218 2502 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000253v2_alt rmsk exon 134219 134879 9017 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000253v2_alt rmsk exon 135181 135852 9017 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000253v2_alt rmsk exon 136154 136191 9017 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000253v2_alt rmsk exon 136180 136297 788 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000253v2_alt rmsk exon 136289 137425 7614 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000253v2_alt rmsk exon 138712 139506 6846 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000253v2_alt rmsk exon 139820 140121 6846 - . gene_id "LTR57_6_GL000253v2_alt"; transcript_id "LTR57_6_GL000253v2_alt"; locus "LTR57_6_GL000253v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0212"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "501"; repStart "-4535"; ### MER41_6_GL000253v2_alt(a) ### chr6_GL000253v2_alt rmsk gene 408036 408820 . - . gene_id "MER41_6_GL000253v2_alt(a)"; transcript_id "MER41_6_GL000253v2_alt(a)"; locus "MER41_6_GL000253v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0651"; model_cov "786"; model_pct "13.2"; chr6_GL000253v2_alt rmsk exon 408036 408820 5165 - . gene_id "MER41_6_GL000253v2_alt(a)"; transcript_id "MER41_6_GL000253v2_alt(a)"; locus "MER41_6_GL000253v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0651"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000253v2_alt(b) ### chr6_GL000253v2_alt rmsk gene 408826 410063 . + . gene_id "MER41_6_GL000253v2_alt(b)"; transcript_id "MER41_6_GL000253v2_alt(b)"; locus "MER41_6_GL000253v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0652"; model_cov "745"; model_pct "12.5"; chr6_GL000253v2_alt rmsk exon 408826 409557 4945 + . gene_id "MER41_6_GL000253v2_alt(b)"; transcript_id "MER41_6_GL000253v2_alt(b)"; locus "MER41_6_GL000253v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0652"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000253v2_alt rmsk exon 409558 410063 2684 + . gene_id "MER41_6_GL000253v2_alt(b)"; transcript_id "MER41_6_GL000253v2_alt(b)"; locus "MER41_6_GL000253v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0652"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6_GL000253v2_alt(a) ### chr6_GL000253v2_alt rmsk gene 474719 478116 . + . gene_id "ERV316A3_6_GL000253v2_alt(a)"; transcript_id "ERV316A3_6_GL000253v2_alt(a)"; locus "ERV316A3_6_GL000253v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2929"; model_cov "2675"; model_pct "51.2"; chr6_GL000253v2_alt rmsk exon 474719 475432 1880 + . gene_id "ERV316A3_6_GL000253v2_alt(a)"; transcript_id "ERV316A3_6_GL000253v2_alt(a)"; locus "ERV316A3_6_GL000253v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2929"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2542"; chr6_GL000253v2_alt rmsk exon 475500 477139 3971 + . gene_id "ERV316A3_6_GL000253v2_alt(a)"; transcript_id "ERV316A3_6_GL000253v2_alt(a)"; locus "ERV316A3_6_GL000253v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2929"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "3020"; chr6_GL000253v2_alt rmsk exon 477163 477435 661 + . gene_id "ERV316A3_6_GL000253v2_alt(a)"; transcript_id "ERV316A3_6_GL000253v2_alt(a)"; locus "ERV316A3_6_GL000253v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2929"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000253v2_alt rmsk exon 477667 478116 1205 + . gene_id "ERV316A3_6_GL000253v2_alt(a)"; transcript_id "ERV316A3_6_GL000253v2_alt(a)"; locus "ERV316A3_6_GL000253v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2929"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 511047 518378 . - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1333"; model_cov "6219"; model_pct "80.6"; chr6_GL000253v2_alt rmsk exon 511047 511485 2405 - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1333"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000253v2_alt rmsk exon 511486 512209 4641 - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1333"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6_GL000253v2_alt rmsk exon 512204 517343 15620 - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1333"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "791"; repStart "-1878"; chr6_GL000253v2_alt rmsk exon 517399 517936 968 - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1333"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "1"; repStart "-7254"; chr6_GL000253v2_alt rmsk exon 517937 518378 2256 - . gene_id "HERVH_6_GL000253v2_alt"; transcript_id "HERVH_6_GL000253v2_alt"; locus "HERVH_6_GL000253v2_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1333"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### ERV316A3_6_GL000253v2_alt(b) ### chr6_GL000253v2_alt rmsk gene 669498 671082 . + . gene_id "ERV316A3_6_GL000253v2_alt(b)"; transcript_id "ERV316A3_6_GL000253v2_alt(b)"; locus "ERV316A3_6_GL000253v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2930"; model_cov "1658"; model_pct "31.7"; chr6_GL000253v2_alt rmsk exon 669498 671082 3239 + . gene_id "ERV316A3_6_GL000253v2_alt(b)"; transcript_id "ERV316A3_6_GL000253v2_alt(b)"; locus "ERV316A3_6_GL000253v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2930"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-2833"; repStart "735"; ### MER4_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 786984 792527 . - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1016"; model_cov "3139"; model_pct "47.6"; chr6_GL000253v2_alt rmsk exon 786984 788635 8673 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1016"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000253v2_alt rmsk exon 788932 789539 8673 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1016"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000253v2_alt rmsk exon 789527 789603 2125 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1016"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000253v2_alt rmsk exon 790127 790971 2125 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1016"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000253v2_alt rmsk exon 792023 792104 482 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1016"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000253v2_alt rmsk exon 792108 792527 2471 - . gene_id "MER4_6_GL000253v2_alt"; transcript_id "MER4_6_GL000253v2_alt"; locus "MER4_6_GL000253v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1016"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000253v2_alt(c) ### chr6_GL000253v2_alt rmsk gene 844815 849301 . - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2931"; model_cov "1992"; model_pct "38.1"; chr6_GL000253v2_alt rmsk exon 844815 845524 3412 - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2931"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6_GL000253v2_alt rmsk exon 846049 846667 3412 - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2931"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2789"; repStart "-1847"; chr6_GL000253v2_alt rmsk exon 846982 847165 566 - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2931"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000253v2_alt rmsk exon 848438 848588 793 - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2931"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000253v2_alt rmsk exon 848884 849301 890 - . gene_id "ERV316A3_6_GL000253v2_alt(c)"; transcript_id "ERV316A3_6_GL000253v2_alt(c)"; locus "ERV316A3_6_GL000253v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2931"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 948788 949585 . + . gene_id "HERVL40_6_GL000253v2_alt"; transcript_id "HERVL40_6_GL000253v2_alt"; locus "HERVL40_6_GL000253v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0498"; model_cov "718"; model_pct "13.0"; chr6_GL000253v2_alt rmsk exon 948788 949251 1156 + . gene_id "HERVL40_6_GL000253v2_alt"; transcript_id "HERVL40_6_GL000253v2_alt"; locus "HERVL40_6_GL000253v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0498"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "-4697"; repStart "415"; chr6_GL000253v2_alt rmsk exon 949325 949585 593 + . gene_id "HERVL40_6_GL000253v2_alt"; transcript_id "HERVL40_6_GL000253v2_alt"; locus "HERVL40_6_GL000253v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0498"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "924"; ### ERV316A3_6_GL000253v2_alt(d) ### chr6_GL000253v2_alt rmsk gene 975967 980281 . + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2932"; model_cov "3966"; model_pct "75.9"; chr6_GL000253v2_alt rmsk exon 975967 976061 335 + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2932"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000253v2_alt rmsk exon 976086 977786 3692 + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2932"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-2708"; repStart "832"; chr6_GL000253v2_alt rmsk exon 977930 978682 1426 + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2932"; repClass "LTR"; repEnd "3053"; repFamily "ERVL"; repLeft "-2173"; repStart "2080"; chr6_GL000253v2_alt rmsk exon 978684 979899 3653 + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2932"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000253v2_alt rmsk exon 979903 980281 1035 + . gene_id "ERV316A3_6_GL000253v2_alt(d)"; transcript_id "ERV316A3_6_GL000253v2_alt(d)"; locus "ERV316A3_6_GL000253v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2932"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000253v2_alt(e) ### chr6_GL000253v2_alt rmsk gene 1030415 1035544 . + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2933"; model_cov "3976"; model_pct "76.1"; chr6_GL000253v2_alt rmsk exon 1030415 1030824 1188 + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2933"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr6_GL000253v2_alt rmsk exon 1031098 1031412 740 + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2933"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-4662"; repStart "233"; chr6_GL000253v2_alt rmsk exon 1031533 1033964 4638 + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2933"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000253v2_alt rmsk exon 1033971 1035170 3135 + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2933"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000253v2_alt rmsk exon 1035173 1035544 1101 + . gene_id "ERV316A3_6_GL000253v2_alt(e)"; transcript_id "ERV316A3_6_GL000253v2_alt(e)"; locus "ERV316A3_6_GL000253v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2933"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000253v2_alt(f) ### chr6_GL000253v2_alt rmsk gene 1055704 1056927 . + . gene_id "ERV316A3_6_GL000253v2_alt(f)"; transcript_id "ERV316A3_6_GL000253v2_alt(f)"; locus "ERV316A3_6_GL000253v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2934"; model_cov "862"; model_pct "16.5"; chr6_GL000253v2_alt rmsk exon 1055704 1056542 1940 + . gene_id "ERV316A3_6_GL000253v2_alt(f)"; transcript_id "ERV316A3_6_GL000253v2_alt(f)"; locus "ERV316A3_6_GL000253v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2934"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000253v2_alt rmsk exon 1056546 1056927 1317 + . gene_id "ERV316A3_6_GL000253v2_alt(f)"; transcript_id "ERV316A3_6_GL000253v2_alt(f)"; locus "ERV316A3_6_GL000253v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2934"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000253v2_alt(g) ### chr6_GL000253v2_alt rmsk gene 1078451 1081190 . + . gene_id "ERV316A3_6_GL000253v2_alt(g)"; transcript_id "ERV316A3_6_GL000253v2_alt(g)"; locus "ERV316A3_6_GL000253v2_alt(g)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2935"; model_cov "2330"; model_pct "44.6"; chr6_GL000253v2_alt rmsk exon 1078451 1079584 2799 + . gene_id "ERV316A3_6_GL000253v2_alt(g)"; transcript_id "ERV316A3_6_GL000253v2_alt(g)"; locus "ERV316A3_6_GL000253v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2935"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000253v2_alt rmsk exon 1079585 1080794 3052 + . gene_id "ERV316A3_6_GL000253v2_alt(g)"; transcript_id "ERV316A3_6_GL000253v2_alt(g)"; locus "ERV316A3_6_GL000253v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2935"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000253v2_alt rmsk exon 1080798 1081190 1224 + . gene_id "ERV316A3_6_GL000253v2_alt(g)"; transcript_id "ERV316A3_6_GL000253v2_alt(g)"; locus "ERV316A3_6_GL000253v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2935"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000253v2_alt(h) ### chr6_GL000253v2_alt rmsk gene 1130739 1136215 . + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2936"; model_cov "4234"; model_pct "81.0"; chr6_GL000253v2_alt rmsk exon 1130739 1131176 1260 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000253v2_alt rmsk exon 1131179 1131751 390 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "826"; repFamily "ERVL"; repLeft "-4400"; repStart "233"; chr6_GL000253v2_alt rmsk exon 1131858 1133712 5396 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000253v2_alt rmsk exon 1134006 1134612 5396 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000253v2_alt rmsk exon 1134613 1135817 3479 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000253v2_alt rmsk exon 1135828 1136215 1118 + . gene_id "ERV316A3_6_GL000253v2_alt(h)"; transcript_id "ERV316A3_6_GL000253v2_alt(h)"; locus "ERV316A3_6_GL000253v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2936"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000253v2_alt(i) ### chr6_GL000253v2_alt rmsk gene 1148559 1149988 . + . gene_id "ERV316A3_6_GL000253v2_alt(i)"; transcript_id "ERV316A3_6_GL000253v2_alt(i)"; locus "ERV316A3_6_GL000253v2_alt(i)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2937"; model_cov "1435"; model_pct "27.5"; chr6_GL000253v2_alt rmsk exon 1148559 1148830 360 + . gene_id "ERV316A3_6_GL000253v2_alt(i)"; transcript_id "ERV316A3_6_GL000253v2_alt(i)"; locus "ERV316A3_6_GL000253v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2937"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "995"; chr6_GL000253v2_alt rmsk exon 1148829 1149988 2876 + . gene_id "ERV316A3_6_GL000253v2_alt(i)"; transcript_id "ERV316A3_6_GL000253v2_alt(i)"; locus "ERV316A3_6_GL000253v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2937"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000253v2_alt(j) ### chr6_GL000253v2_alt rmsk gene 1169082 1174547 . + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2938"; model_cov "4199"; model_pct "80.3"; chr6_GL000253v2_alt rmsk exon 1169082 1169524 1183 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000253v2_alt rmsk exon 1169536 1170099 697 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "16"; chr6_GL000253v2_alt rmsk exon 1170209 1172678 5295 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000253v2_alt rmsk exon 1172679 1173248 1380 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000253v2_alt rmsk exon 1173541 1174160 1506 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "-236"; repStart "4393"; chr6_GL000253v2_alt rmsk exon 1174167 1174547 1240 + . gene_id "ERV316A3_6_GL000253v2_alt(j)"; transcript_id "ERV316A3_6_GL000253v2_alt(j)"; locus "ERV316A3_6_GL000253v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2938"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000253v2_alt(k) ### chr6_GL000253v2_alt rmsk gene 1201478 1204942 . + . gene_id "ERV316A3_6_GL000253v2_alt(k)"; transcript_id "ERV316A3_6_GL000253v2_alt(k)"; locus "ERV316A3_6_GL000253v2_alt(k)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2941"; model_cov "3062"; model_pct "58.6"; chr6_GL000253v2_alt rmsk exon 1201478 1203305 3676 + . gene_id "ERV316A3_6_GL000253v2_alt(k)"; transcript_id "ERV316A3_6_GL000253v2_alt(k)"; locus "ERV316A3_6_GL000253v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2941"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000253v2_alt rmsk exon 1203314 1204089 2028 + . gene_id "ERV316A3_6_GL000253v2_alt(k)"; transcript_id "ERV316A3_6_GL000253v2_alt(k)"; locus "ERV316A3_6_GL000253v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2941"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-651"; repStart "3783"; chr6_GL000253v2_alt rmsk exon 1204125 1204544 2028 + . gene_id "ERV316A3_6_GL000253v2_alt(k)"; transcript_id "ERV316A3_6_GL000253v2_alt(k)"; locus "ERV316A3_6_GL000253v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2941"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4576"; chr6_GL000253v2_alt rmsk exon 1204559 1204942 1310 + . gene_id "ERV316A3_6_GL000253v2_alt(k)"; transcript_id "ERV316A3_6_GL000253v2_alt(k)"; locus "ERV316A3_6_GL000253v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2941"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### HERVP71A_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 1223240 1231100 . + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0089"; model_cov "3805"; model_pct "50.1"; chr6_GL000253v2_alt rmsk exon 1223240 1223682 2827 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000253v2_alt rmsk exon 1225010 1225657 3850 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "1759"; repFamily "ERV1"; repLeft "-5831"; repStart "1116"; chr6_GL000253v2_alt rmsk exon 1227139 1227864 5113 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000253v2_alt rmsk exon 1228162 1228289 5113 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000253v2_alt rmsk exon 1228306 1228513 1328 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-2127"; repStart "5243"; chr6_GL000253v2_alt rmsk exon 1228667 1229569 4754 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000253v2_alt rmsk exon 1229764 1230497 3958 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000253v2_alt rmsk exon 1230738 1231100 1996 + . gene_id "HERVP71A_6_GL000253v2_alt"; transcript_id "HERVP71A_6_GL000253v2_alt"; locus "HERVP71A_6_GL000253v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0089"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000253v2_alt(l) ### chr6_GL000253v2_alt rmsk gene 1258677 1264017 . + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2942"; model_cov "4034"; model_pct "77.2"; chr6_GL000253v2_alt rmsk exon 1258677 1259120 1376 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000253v2_alt rmsk exon 1259359 1259479 406 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "219"; chr6_GL000253v2_alt rmsk exon 1259497 1259746 425 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-4577"; repStart "372"; chr6_GL000253v2_alt rmsk exon 1259812 1261396 5254 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000253v2_alt rmsk exon 1261715 1262586 5254 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6_GL000253v2_alt rmsk exon 1262587 1263790 3123 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000253v2_alt rmsk exon 1263804 1264017 755 + . gene_id "ERV316A3_6_GL000253v2_alt(l)"; transcript_id "ERV316A3_6_GL000253v2_alt(l)"; locus "ERV316A3_6_GL000253v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2942"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6_GL000253v2_alt(m) ### chr6_GL000253v2_alt rmsk gene 1586281 1587697 . + . gene_id "ERV316A3_6_GL000253v2_alt(m)"; transcript_id "ERV316A3_6_GL000253v2_alt(m)"; locus "ERV316A3_6_GL000253v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2943"; model_cov "1396"; model_pct "26.7"; chr6_GL000253v2_alt rmsk exon 1586281 1587697 2397 + . gene_id "ERV316A3_6_GL000253v2_alt(m)"; transcript_id "ERV316A3_6_GL000253v2_alt(m)"; locus "ERV316A3_6_GL000253v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2943"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6_GL000253v2_alt(a) ### chr6_GL000253v2_alt rmsk gene 1690156 1690780 . - . gene_id "ERVLE_6_GL000253v2_alt(a)"; transcript_id "ERVLE_6_GL000253v2_alt(a)"; locus "ERVLE_6_GL000253v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3834"; model_cov "653"; model_pct "11.5"; chr6_GL000253v2_alt rmsk exon 1690156 1690780 1319 - . gene_id "ERVLE_6_GL000253v2_alt(a)"; transcript_id "ERVLE_6_GL000253v2_alt(a)"; locus "ERVLE_6_GL000253v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3834"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### HERVL_6_GL000253v2_alt(a) ### chr6_GL000253v2_alt rmsk gene 2276605 2282061 . + . gene_id "HERVL_6_GL000253v2_alt(a)"; transcript_id "HERVL_6_GL000253v2_alt(a)"; locus "HERVL_6_GL000253v2_alt(a)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1467"; model_cov "4774"; model_pct "84.4"; chr6_GL000253v2_alt rmsk exon 2276605 2277741 37918 + . gene_id "HERVL_6_GL000253v2_alt(a)"; transcript_id "HERVL_6_GL000253v2_alt(a)"; locus "HERVL_6_GL000253v2_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1467"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6_GL000253v2_alt rmsk exon 2278039 2281652 37918 + . gene_id "HERVL_6_GL000253v2_alt(a)"; transcript_id "HERVL_6_GL000253v2_alt(a)"; locus "HERVL_6_GL000253v2_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1467"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6_GL000253v2_alt rmsk exon 2281653 2282061 3137 + . gene_id "HERVL_6_GL000253v2_alt(a)"; transcript_id "HERVL_6_GL000253v2_alt(a)"; locus "HERVL_6_GL000253v2_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1467"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000253v2_alt(b) ### chr6_GL000253v2_alt rmsk gene 2347483 2351533 . - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3836"; model_cov "2672"; model_pct "47.2"; chr6_GL000253v2_alt rmsk exon 2347483 2348568 3754 - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3836"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000253v2_alt rmsk exon 2348613 2348759 403 - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3836"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000253v2_alt rmsk exon 2349220 2350005 1488 - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3836"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6_GL000253v2_alt rmsk exon 2350305 2350342 1065 - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3836"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "757"; repStart "-4878"; chr6_GL000253v2_alt rmsk exon 2351129 2351533 1065 - . gene_id "ERVLE_6_GL000253v2_alt(b)"; transcript_id "ERVLE_6_GL000253v2_alt(b)"; locus "ERVLE_6_GL000253v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3836"; repClass "LTR"; repEnd "756"; repFamily "ERVL"; repLeft "340"; repStart "-4911"; ### HARLEQUIN_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 2492388 2497299 . - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0203"; model_cov "4527"; model_pct "65.6"; chr6_GL000253v2_alt rmsk exon 2492388 2492959 3724 - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0203"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "5886"; repStart "-422"; chr6_GL000253v2_alt rmsk exon 2492954 2494972 14734 - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0203"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000253v2_alt rmsk exon 2494972 2495943 6534 - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0203"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000253v2_alt rmsk exon 2495929 2496820 6374 - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0203"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr6_GL000253v2_alt rmsk exon 2496821 2497299 4077 - . gene_id "HARLEQUIN_6_GL000253v2_alt"; transcript_id "HARLEQUIN_6_GL000253v2_alt"; locus "HARLEQUIN_6_GL000253v2_alt"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0203"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 2536300 2539009 . - . gene_id "HERV3_6_GL000253v2_alt"; transcript_id "HERV3_6_GL000253v2_alt"; locus "HERV3_6_GL000253v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0107"; model_cov "1870"; model_pct "22.2"; chr6_GL000253v2_alt rmsk exon 2536300 2537145 8712 - . gene_id "HERV3_6_GL000253v2_alt"; transcript_id "HERV3_6_GL000253v2_alt"; locus "HERV3_6_GL000253v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0107"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6502"; repStart "-1086"; chr6_GL000253v2_alt rmsk exon 2537447 2538426 8712 - . gene_id "HERV3_6_GL000253v2_alt"; transcript_id "HERV3_6_GL000253v2_alt"; locus "HERV3_6_GL000253v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0107"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6_GL000253v2_alt rmsk exon 2538428 2538547 844 - . gene_id "HERV3_6_GL000253v2_alt"; transcript_id "HERV3_6_GL000253v2_alt"; locus "HERV3_6_GL000253v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0107"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000253v2_alt rmsk exon 2538837 2539009 844 - . gene_id "HERV3_6_GL000253v2_alt"; transcript_id "HERV3_6_GL000253v2_alt"; locus "HERV3_6_GL000253v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0107"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 2542529 2546640 . - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0280"; model_cov "3520"; model_pct "58.5"; chr6_GL000253v2_alt rmsk exon 2542529 2542642 870 - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0280"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000253v2_alt rmsk exon 2542645 2543163 3946 - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0280"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4601"; repStart "-916"; chr6_GL000253v2_alt rmsk exon 2543151 2543380 1758 - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0280"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000253v2_alt rmsk exon 2543382 2546114 21525 - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0280"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000253v2_alt rmsk exon 2546127 2546640 4303 - . gene_id "HML3_6_GL000253v2_alt"; transcript_id "HML3_6_GL000253v2_alt"; locus "HML3_6_GL000253v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0280"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000253v2_alt(a) ### chr6_GL000253v2_alt rmsk gene 2554062 2555583 . - . gene_id "ERVLB4_6_GL000253v2_alt(a)"; transcript_id "ERVLB4_6_GL000253v2_alt(a)"; locus "ERVLB4_6_GL000253v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1984"; model_cov "852"; model_pct "14.9"; chr6_GL000253v2_alt rmsk exon 2554062 2554394 1362 - . gene_id "ERVLB4_6_GL000253v2_alt(a)"; transcript_id "ERVLB4_6_GL000253v2_alt(a)"; locus "ERVLB4_6_GL000253v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1984"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000253v2_alt rmsk exon 2554398 2554829 3800 - . gene_id "ERVLB4_6_GL000253v2_alt(a)"; transcript_id "ERVLB4_6_GL000253v2_alt(a)"; locus "ERVLB4_6_GL000253v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1984"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000253v2_alt rmsk exon 2555143 2555583 3800 - . gene_id "ERVLB4_6_GL000253v2_alt(a)"; transcript_id "ERVLB4_6_GL000253v2_alt(a)"; locus "ERVLB4_6_GL000253v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1984"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4861"; repStart "-421"; ### ERVLE_6_GL000253v2_alt(c) ### chr6_GL000253v2_alt rmsk gene 2600440 2601075 . + . gene_id "ERVLE_6_GL000253v2_alt(c)"; transcript_id "ERVLE_6_GL000253v2_alt(c)"; locus "ERVLE_6_GL000253v2_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3837"; model_cov "643"; model_pct "11.3"; chr6_GL000253v2_alt rmsk exon 2600440 2600817 818 + . gene_id "ERVLE_6_GL000253v2_alt(c)"; transcript_id "ERVLE_6_GL000253v2_alt(c)"; locus "ERVLE_6_GL000253v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3837"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2087"; repStart "3173"; chr6_GL000253v2_alt rmsk exon 2600843 2601075 469 + . gene_id "ERVLE_6_GL000253v2_alt(c)"; transcript_id "ERVLE_6_GL000253v2_alt(c)"; locus "ERVLE_6_GL000253v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3837"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1782"; repStart "3649"; ### ERV316A3_6_GL000253v2_alt(n) ### chr6_GL000253v2_alt rmsk gene 2609522 2610981 . + . gene_id "ERV316A3_6_GL000253v2_alt(n)"; transcript_id "ERV316A3_6_GL000253v2_alt(n)"; locus "ERV316A3_6_GL000253v2_alt(n)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2944"; model_cov "1471"; model_pct "28.1"; chr6_GL000253v2_alt rmsk exon 2609522 2610981 3023 + . gene_id "ERV316A3_6_GL000253v2_alt(n)"; transcript_id "ERV316A3_6_GL000253v2_alt(n)"; locus "ERV316A3_6_GL000253v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2944"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000253v2_alt(b) ### chr6_GL000253v2_alt rmsk gene 2629525 2631037 . - . gene_id "ERVLB4_6_GL000253v2_alt(b)"; transcript_id "ERVLB4_6_GL000253v2_alt(b)"; locus "ERVLB4_6_GL000253v2_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1985"; model_cov "859"; model_pct "15.0"; chr6_GL000253v2_alt rmsk exon 2629525 2629863 1336 - . gene_id "ERVLB4_6_GL000253v2_alt(b)"; transcript_id "ERVLB4_6_GL000253v2_alt(b)"; locus "ERVLB4_6_GL000253v2_alt(b)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1985"; repClass "LTR"; repEnd "349"; repFamily "ERVL"; repLeft "1"; repStart "-115"; chr6_GL000253v2_alt rmsk exon 2629871 2630311 1352 - . gene_id "ERVLB4_6_GL000253v2_alt(b)"; transcript_id "ERVLB4_6_GL000253v2_alt(b)"; locus "ERVLB4_6_GL000253v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1985"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5275"; repStart "-9"; chr6_GL000253v2_alt rmsk exon 2630606 2631037 2277 - . gene_id "ERVLB4_6_GL000253v2_alt(b)"; transcript_id "ERVLB4_6_GL000253v2_alt(b)"; locus "ERVLB4_6_GL000253v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1985"; repClass "LTR"; repEnd "5299"; repFamily "ERVL"; repLeft "4870"; repStart "-415"; ### ERVLB4_6_GL000253v2_alt(c) ### chr6_GL000253v2_alt rmsk gene 2684937 2685725 . - . gene_id "ERVLB4_6_GL000253v2_alt(c)"; transcript_id "ERVLB4_6_GL000253v2_alt(c)"; locus "ERVLB4_6_GL000253v2_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1987"; model_cov "809"; model_pct "14.2"; chr6_GL000253v2_alt rmsk exon 2684937 2685725 2589 - . gene_id "ERVLB4_6_GL000253v2_alt(c)"; transcript_id "ERVLB4_6_GL000253v2_alt(c)"; locus "ERVLB4_6_GL000253v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1987"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "75"; repStart "-4830"; ### ERV316A3_6_GL000253v2_alt(o) ### chr6_GL000253v2_alt rmsk gene 2692354 2695890 . - . gene_id "ERV316A3_6_GL000253v2_alt(o)"; transcript_id "ERV316A3_6_GL000253v2_alt(o)"; locus "ERV316A3_6_GL000253v2_alt(o)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2945"; model_cov "2902"; model_pct "55.5"; chr6_GL000253v2_alt rmsk exon 2692354 2692700 1047 - . gene_id "ERV316A3_6_GL000253v2_alt(o)"; transcript_id "ERV316A3_6_GL000253v2_alt(o)"; locus "ERV316A3_6_GL000253v2_alt(o)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2945"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "51"; repStart "-56"; chr6_GL000253v2_alt rmsk exon 2692702 2693731 2741 - . gene_id "ERV316A3_6_GL000253v2_alt(o)"; transcript_id "ERV316A3_6_GL000253v2_alt(o)"; locus "ERV316A3_6_GL000253v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2945"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3971"; repStart "-247"; chr6_GL000253v2_alt rmsk exon 2693973 2695890 3898 - . gene_id "ERV316A3_6_GL000253v2_alt(o)"; transcript_id "ERV316A3_6_GL000253v2_alt(o)"; locus "ERV316A3_6_GL000253v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2945"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "1388"; repStart "-1944"; ### HERVL_6_GL000253v2_alt(b) ### chr6_GL000253v2_alt rmsk gene 2737919 2744043 . + . gene_id "HERVL_6_GL000253v2_alt(b)"; transcript_id "HERVL_6_GL000253v2_alt(b)"; locus "HERVL_6_GL000253v2_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1469"; model_cov "5653"; model_pct "100.0"; chr6_GL000253v2_alt rmsk exon 2737919 2743589 44044 + . gene_id "HERVL_6_GL000253v2_alt(b)"; transcript_id "HERVL_6_GL000253v2_alt(b)"; locus "HERVL_6_GL000253v2_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1469"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000253v2_alt rmsk exon 2743590 2744043 3185 + . gene_id "HERVL_6_GL000253v2_alt(b)"; transcript_id "HERVL_6_GL000253v2_alt(b)"; locus "HERVL_6_GL000253v2_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1469"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HUERSP2_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 3679299 3681436 . + . gene_id "HUERSP2_6_GL000253v2_alt"; transcript_id "HUERSP2_6_GL000253v2_alt"; locus "HUERSP2_6_GL000253v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0136"; model_cov "1234"; model_pct "40.0"; chr6_GL000253v2_alt rmsk exon 3679299 3680273 6823 + . gene_id "HUERSP2_6_GL000253v2_alt"; transcript_id "HUERSP2_6_GL000253v2_alt"; locus "HUERSP2_6_GL000253v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0136"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000253v2_alt rmsk exon 3680350 3680598 1648 + . gene_id "HUERSP2_6_GL000253v2_alt"; transcript_id "HUERSP2_6_GL000253v2_alt"; locus "HUERSP2_6_GL000253v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0136"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000253v2_alt rmsk exon 3680601 3681436 5334 + . gene_id "HUERSP2_6_GL000253v2_alt"; transcript_id "HUERSP2_6_GL000253v2_alt"; locus "HUERSP2_6_GL000253v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0136"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 3779726 3783828 . - . gene_id "HML6_6_GL000253v2_alt"; transcript_id "HML6_6_GL000253v2_alt"; locus "HML6_6_GL000253v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0138"; model_cov "3408"; model_pct "47.3"; chr6_GL000253v2_alt rmsk exon 3779726 3781566 23130 - . gene_id "HML6_6_GL000253v2_alt"; transcript_id "HML6_6_GL000253v2_alt"; locus "HML6_6_GL000253v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0138"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000253v2_alt rmsk exon 3781865 3783374 23130 - . gene_id "HML6_6_GL000253v2_alt"; transcript_id "HML6_6_GL000253v2_alt"; locus "HML6_6_GL000253v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0138"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000253v2_alt rmsk exon 3783409 3783828 2449 - . gene_id "HML6_6_GL000253v2_alt"; transcript_id "HML6_6_GL000253v2_alt"; locus "HML6_6_GL000253v2_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0138"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 3947537 3952761 . + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0145"; model_cov "3007"; model_pct "49.3"; chr6_GL000253v2_alt rmsk exon 3947537 3947862 2579 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "6"; chr6_GL000253v2_alt rmsk exon 3947865 3948224 2351 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "-5735"; repStart "3"; chr6_GL000253v2_alt rmsk exon 3949802 3950970 9793 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "2997"; repFamily "ERVK"; repLeft "-3099"; repStart "1827"; chr6_GL000253v2_alt rmsk exon 3950970 3952112 8897 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4414"; chr6_GL000253v2_alt rmsk exon 3952086 3952404 2376 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "5997"; repFamily "ERVK"; repLeft "-99"; repStart "5656"; chr6_GL000253v2_alt rmsk exon 3952424 3952761 2769 + . gene_id "HML1_6_GL000253v2_alt"; transcript_id "HML1_6_GL000253v2_alt"; locus "HML1_6_GL000253v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0145"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 3983251 3984169 . + . gene_id "HERV9_6_GL000253v2_alt"; transcript_id "HERV9_6_GL000253v2_alt"; locus "HERV9_6_GL000253v2_alt"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0234"; model_cov "924"; model_pct "11.0"; chr6_GL000253v2_alt rmsk exon 3983251 3984169 7627 + . gene_id "HERV9_6_GL000253v2_alt"; transcript_id "HERV9_6_GL000253v2_alt"; locus "HERV9_6_GL000253v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0234"; repClass "LTR"; repEnd "6502"; repFamily "ERV1"; repLeft "-1934"; repStart "5578"; ### HERVFH19_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 4126773 4128606 . + . gene_id "HERVFH19_6_GL000253v2_alt"; transcript_id "HERVFH19_6_GL000253v2_alt"; locus "HERVFH19_6_GL000253v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0063"; model_cov "1375"; model_pct "17.8"; chr6_GL000253v2_alt rmsk exon 4126773 4128136 9946 + . gene_id "HERVFH19_6_GL000253v2_alt"; transcript_id "HERVFH19_6_GL000253v2_alt"; locus "HERVFH19_6_GL000253v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0063"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6344"; chr6_GL000253v2_alt rmsk exon 4128137 4128606 3419 + . gene_id "HERVFH19_6_GL000253v2_alt"; transcript_id "HERVFH19_6_GL000253v2_alt"; locus "HERVFH19_6_GL000253v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0063"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_6_GL000253v2_alt ### chr6_GL000253v2_alt rmsk gene 4537481 4544759 . - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0280"; model_cov "4769"; model_pct "53.5"; chr6_GL000253v2_alt rmsk exon 4537481 4538119 4272 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000253v2_alt rmsk exon 4538120 4538394 1530 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000253v2_alt rmsk exon 4538859 4538970 486 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6_GL000253v2_alt rmsk exon 4538971 4539713 4274 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6_GL000253v2_alt rmsk exon 4539700 4540338 4155 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6_GL000253v2_alt rmsk exon 4540341 4540482 1018 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6_GL000253v2_alt rmsk exon 4540476 4541691 8435 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6_GL000253v2_alt rmsk exon 4542689 4543701 6968 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6_GL000253v2_alt rmsk exon 4543711 4544016 1480 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6_GL000253v2_alt rmsk exon 4544022 4544079 324 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6_GL000253v2_alt rmsk exon 4544125 4544759 4028 - . gene_id "HUERSP3_6_GL000253v2_alt"; transcript_id "HUERSP3_6_GL000253v2_alt"; locus "HUERSP3_6_GL000253v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0280"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_6_GL000253v2_alt(c) ### chr6_GL000253v2_alt rmsk gene 4554911 4558083 . - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0653"; model_cov "1929"; model_pct "32.4"; chr6_GL000253v2_alt rmsk exon 4554911 4555265 11689 - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0653"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1959"; repStart "-3651"; chr6_GL000253v2_alt rmsk exon 4555557 4556355 11689 - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0653"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1175"; repStart "-3988"; chr6_GL000253v2_alt rmsk exon 4556662 4557187 11689 - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0653"; repClass "LTR"; repEnd "1174"; repFamily "ERV1"; repLeft "642"; repStart "-4772"; chr6_GL000253v2_alt rmsk exon 4557502 4557629 11689 - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0653"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "522"; repStart "-5305"; chr6_GL000253v2_alt rmsk exon 4557924 4558083 11689 - . gene_id "MER41_6_GL000253v2_alt(c)"; transcript_id "MER41_6_GL000253v2_alt(c)"; locus "MER41_6_GL000253v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0653"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "362"; repStart "-5425"; ### HERVS71_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 31772 42095 . - . gene_id "HERVS71_6_GL000254v2_alt"; transcript_id "HERVS71_6_GL000254v2_alt"; locus "HERVS71_6_GL000254v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0069"; model_cov "8932"; model_pct "99.5"; chr6_GL000254v2_alt rmsk exon 31772 32313 3660 - . gene_id "HERVS71_6_GL000254v2_alt"; transcript_id "HERVS71_6_GL000254v2_alt"; locus "HERVS71_6_GL000254v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0069"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000254v2_alt rmsk exon 32324 39542 60739 - . gene_id "HERVS71_6_GL000254v2_alt"; transcript_id "HERVS71_6_GL000254v2_alt"; locus "HERVS71_6_GL000254v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0069"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000254v2_alt rmsk exon 39835 41550 60739 - . gene_id "HERVS71_6_GL000254v2_alt"; transcript_id "HERVS71_6_GL000254v2_alt"; locus "HERVS71_6_GL000254v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0069"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000254v2_alt rmsk exon 41553 42095 3671 - . gene_id "HERVS71_6_GL000254v2_alt"; transcript_id "HERVS71_6_GL000254v2_alt"; locus "HERVS71_6_GL000254v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0069"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 133868 141618 . - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0213"; model_cov "4258"; model_pct "79.7"; chr6_GL000254v2_alt rmsk exon 133868 134255 2502 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000254v2_alt rmsk exon 134256 134916 9045 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000254v2_alt rmsk exon 135218 135889 9045 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000254v2_alt rmsk exon 136191 136228 9045 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000254v2_alt rmsk exon 136217 136334 788 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000254v2_alt rmsk exon 136326 137456 7506 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000254v2_alt rmsk exon 138903 139697 10283 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000254v2_alt rmsk exon 140010 140315 10283 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6_GL000254v2_alt rmsk exon 140926 141433 10283 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6_GL000254v2_alt rmsk exon 141434 141618 2524 - . gene_id "LTR57_6_GL000254v2_alt"; transcript_id "LTR57_6_GL000254v2_alt"; locus "LTR57_6_GL000254v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0213"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6_GL000254v2_alt(a) ### chr6_GL000254v2_alt rmsk gene 408218 409001 . - . gene_id "MER41_6_GL000254v2_alt(a)"; transcript_id "MER41_6_GL000254v2_alt(a)"; locus "MER41_6_GL000254v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0654"; model_cov "786"; model_pct "13.2"; chr6_GL000254v2_alt rmsk exon 408218 409001 5160 - . gene_id "MER41_6_GL000254v2_alt(a)"; transcript_id "MER41_6_GL000254v2_alt(a)"; locus "MER41_6_GL000254v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0654"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000254v2_alt(b) ### chr6_GL000254v2_alt rmsk gene 409007 410244 . + . gene_id "MER41_6_GL000254v2_alt(b)"; transcript_id "MER41_6_GL000254v2_alt(b)"; locus "MER41_6_GL000254v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0655"; model_cov "745"; model_pct "12.5"; chr6_GL000254v2_alt rmsk exon 409007 409738 4945 + . gene_id "MER41_6_GL000254v2_alt(b)"; transcript_id "MER41_6_GL000254v2_alt(b)"; locus "MER41_6_GL000254v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0655"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000254v2_alt rmsk exon 409739 410244 2656 + . gene_id "MER41_6_GL000254v2_alt(b)"; transcript_id "MER41_6_GL000254v2_alt(b)"; locus "MER41_6_GL000254v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0655"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6_GL000254v2_alt(a) ### chr6_GL000254v2_alt rmsk gene 474879 478266 . + . gene_id "ERV316A3_6_GL000254v2_alt(a)"; transcript_id "ERV316A3_6_GL000254v2_alt(a)"; locus "ERV316A3_6_GL000254v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2947"; model_cov "2778"; model_pct "53.2"; chr6_GL000254v2_alt rmsk exon 474879 475631 1628 + . gene_id "ERV316A3_6_GL000254v2_alt(a)"; transcript_id "ERV316A3_6_GL000254v2_alt(a)"; locus "ERV316A3_6_GL000254v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2947"; repClass "LTR"; repEnd "2929"; repFamily "ERVL"; repLeft "-2297"; repStart "2167"; chr6_GL000254v2_alt rmsk exon 475651 477293 3482 + . gene_id "ERV316A3_6_GL000254v2_alt(a)"; transcript_id "ERV316A3_6_GL000254v2_alt(a)"; locus "ERV316A3_6_GL000254v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2947"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "-831"; repStart "2688"; chr6_GL000254v2_alt rmsk exon 477313 477585 579 + . gene_id "ERV316A3_6_GL000254v2_alt(a)"; transcript_id "ERV316A3_6_GL000254v2_alt(a)"; locus "ERV316A3_6_GL000254v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2947"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000254v2_alt rmsk exon 477817 478266 1060 + . gene_id "ERV316A3_6_GL000254v2_alt(a)"; transcript_id "ERV316A3_6_GL000254v2_alt(a)"; locus "ERV316A3_6_GL000254v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2947"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### ERV316A3_6_GL000254v2_alt(b) ### chr6_GL000254v2_alt rmsk gene 669727 670967 . + . gene_id "ERV316A3_6_GL000254v2_alt(b)"; transcript_id "ERV316A3_6_GL000254v2_alt(b)"; locus "ERV316A3_6_GL000254v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2948"; model_cov "1255"; model_pct "24.0"; chr6_GL000254v2_alt rmsk exon 669727 670967 2111 + . gene_id "ERV316A3_6_GL000254v2_alt(b)"; transcript_id "ERV316A3_6_GL000254v2_alt(b)"; locus "ERV316A3_6_GL000254v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2948"; repClass "LTR"; repEnd "1990"; repFamily "ERVL"; repLeft "-3236"; repStart "735"; ### MER4_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 787235 792778 . - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1017"; model_cov "3139"; model_pct "47.6"; chr6_GL000254v2_alt rmsk exon 787235 788886 8673 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1017"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000254v2_alt rmsk exon 789183 789790 8673 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1017"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000254v2_alt rmsk exon 789778 789854 2125 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1017"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000254v2_alt rmsk exon 790378 791222 2125 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1017"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000254v2_alt rmsk exon 792274 792355 482 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1017"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000254v2_alt rmsk exon 792359 792778 2471 - . gene_id "MER4_6_GL000254v2_alt"; transcript_id "MER4_6_GL000254v2_alt"; locus "MER4_6_GL000254v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1017"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000254v2_alt(c) ### chr6_GL000254v2_alt rmsk gene 845025 849512 . - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2949"; model_cov "1994"; model_pct "38.2"; chr6_GL000254v2_alt rmsk exon 845025 845735 3410 - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2949"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6_GL000254v2_alt rmsk exon 846260 846880 3410 - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2949"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2787"; repStart "-1847"; chr6_GL000254v2_alt rmsk exon 847193 847376 566 - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2949"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000254v2_alt rmsk exon 848649 848799 793 - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2949"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000254v2_alt rmsk exon 849095 849512 876 - . gene_id "ERV316A3_6_GL000254v2_alt(c)"; transcript_id "ERV316A3_6_GL000254v2_alt(c)"; locus "ERV316A3_6_GL000254v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2949"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 949055 949852 . + . gene_id "HERVL40_6_GL000254v2_alt"; transcript_id "HERVL40_6_GL000254v2_alt"; locus "HERVL40_6_GL000254v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0499"; model_cov "809"; model_pct "14.6"; chr6_GL000254v2_alt rmsk exon 949055 949852 1746 + . gene_id "HERVL40_6_GL000254v2_alt"; transcript_id "HERVL40_6_GL000254v2_alt"; locus "HERVL40_6_GL000254v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0499"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "415"; ### ERV316A3_6_GL000254v2_alt(d) ### chr6_GL000254v2_alt rmsk gene 976213 980373 . + . gene_id "ERV316A3_6_GL000254v2_alt(d)"; transcript_id "ERV316A3_6_GL000254v2_alt(d)"; locus "ERV316A3_6_GL000254v2_alt(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2950"; model_cov "3757"; model_pct "71.9"; chr6_GL000254v2_alt rmsk exon 976213 976307 335 + . gene_id "ERV316A3_6_GL000254v2_alt(d)"; transcript_id "ERV316A3_6_GL000254v2_alt(d)"; locus "ERV316A3_6_GL000254v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2950"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000254v2_alt rmsk exon 976332 978779 5543 + . gene_id "ERV316A3_6_GL000254v2_alt(d)"; transcript_id "ERV316A3_6_GL000254v2_alt(d)"; locus "ERV316A3_6_GL000254v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2950"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-1944"; repStart "832"; chr6_GL000254v2_alt rmsk exon 978776 979991 3653 + . gene_id "ERV316A3_6_GL000254v2_alt(d)"; transcript_id "ERV316A3_6_GL000254v2_alt(d)"; locus "ERV316A3_6_GL000254v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2950"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000254v2_alt rmsk exon 979995 980373 1066 + . gene_id "ERV316A3_6_GL000254v2_alt(d)"; transcript_id "ERV316A3_6_GL000254v2_alt(d)"; locus "ERV316A3_6_GL000254v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2950"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000254v2_alt(e) ### chr6_GL000254v2_alt rmsk gene 1030486 1035615 . + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2951"; model_cov "3976"; model_pct "76.1"; chr6_GL000254v2_alt rmsk exon 1030486 1030895 1188 + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2951"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr6_GL000254v2_alt rmsk exon 1031169 1031483 740 + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2951"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-4662"; repStart "233"; chr6_GL000254v2_alt rmsk exon 1031604 1034035 4621 + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2951"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000254v2_alt rmsk exon 1034042 1035241 3111 + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2951"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000254v2_alt rmsk exon 1035244 1035615 1101 + . gene_id "ERV316A3_6_GL000254v2_alt(e)"; transcript_id "ERV316A3_6_GL000254v2_alt(e)"; locus "ERV316A3_6_GL000254v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2951"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000254v2_alt(f) ### chr6_GL000254v2_alt rmsk gene 1055779 1057002 . + . gene_id "ERV316A3_6_GL000254v2_alt(f)"; transcript_id "ERV316A3_6_GL000254v2_alt(f)"; locus "ERV316A3_6_GL000254v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2952"; model_cov "862"; model_pct "16.5"; chr6_GL000254v2_alt rmsk exon 1055779 1056617 1940 + . gene_id "ERV316A3_6_GL000254v2_alt(f)"; transcript_id "ERV316A3_6_GL000254v2_alt(f)"; locus "ERV316A3_6_GL000254v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2952"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000254v2_alt rmsk exon 1056621 1057002 1317 + . gene_id "ERV316A3_6_GL000254v2_alt(f)"; transcript_id "ERV316A3_6_GL000254v2_alt(f)"; locus "ERV316A3_6_GL000254v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2952"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000254v2_alt(g) ### chr6_GL000254v2_alt rmsk gene 1078428 1081167 . + . gene_id "ERV316A3_6_GL000254v2_alt(g)"; transcript_id "ERV316A3_6_GL000254v2_alt(g)"; locus "ERV316A3_6_GL000254v2_alt(g)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2953"; model_cov "2330"; model_pct "44.6"; chr6_GL000254v2_alt rmsk exon 1078428 1079561 2811 + . gene_id "ERV316A3_6_GL000254v2_alt(g)"; transcript_id "ERV316A3_6_GL000254v2_alt(g)"; locus "ERV316A3_6_GL000254v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2953"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000254v2_alt rmsk exon 1079562 1080771 3040 + . gene_id "ERV316A3_6_GL000254v2_alt(g)"; transcript_id "ERV316A3_6_GL000254v2_alt(g)"; locus "ERV316A3_6_GL000254v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2953"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000254v2_alt rmsk exon 1080775 1081167 1224 + . gene_id "ERV316A3_6_GL000254v2_alt(g)"; transcript_id "ERV316A3_6_GL000254v2_alt(g)"; locus "ERV316A3_6_GL000254v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2953"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000254v2_alt(h) ### chr6_GL000254v2_alt rmsk gene 1131052 1136527 . + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2954"; model_cov "4204"; model_pct "80.4"; chr6_GL000254v2_alt rmsk exon 1131052 1131489 1299 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000254v2_alt rmsk exon 1131492 1132035 390 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4430"; repStart "233"; chr6_GL000254v2_alt rmsk exon 1132171 1134025 5391 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000254v2_alt rmsk exon 1134319 1134924 5391 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000254v2_alt rmsk exon 1134925 1136129 3460 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000254v2_alt rmsk exon 1136140 1136527 1161 + . gene_id "ERV316A3_6_GL000254v2_alt(h)"; transcript_id "ERV316A3_6_GL000254v2_alt(h)"; locus "ERV316A3_6_GL000254v2_alt(h)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2954"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000254v2_alt(i) ### chr6_GL000254v2_alt rmsk gene 1148966 1150387 . + . gene_id "ERV316A3_6_GL000254v2_alt(i)"; transcript_id "ERV316A3_6_GL000254v2_alt(i)"; locus "ERV316A3_6_GL000254v2_alt(i)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2955"; model_cov "1427"; model_pct "27.3"; chr6_GL000254v2_alt rmsk exon 1148966 1149229 377 + . gene_id "ERV316A3_6_GL000254v2_alt(i)"; transcript_id "ERV316A3_6_GL000254v2_alt(i)"; locus "ERV316A3_6_GL000254v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2955"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "1003"; chr6_GL000254v2_alt rmsk exon 1149228 1150387 2913 + . gene_id "ERV316A3_6_GL000254v2_alt(i)"; transcript_id "ERV316A3_6_GL000254v2_alt(i)"; locus "ERV316A3_6_GL000254v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2955"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000254v2_alt(j) ### chr6_GL000254v2_alt rmsk gene 1169577 1172079 . + . gene_id "ERV316A3_6_GL000254v2_alt(j)"; transcript_id "ERV316A3_6_GL000254v2_alt(j)"; locus "ERV316A3_6_GL000254v2_alt(j)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2956"; model_cov "1865"; model_pct "35.7"; chr6_GL000254v2_alt rmsk exon 1169577 1170019 1237 + . gene_id "ERV316A3_6_GL000254v2_alt(j)"; transcript_id "ERV316A3_6_GL000254v2_alt(j)"; locus "ERV316A3_6_GL000254v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2956"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000254v2_alt rmsk exon 1170257 1170594 677 + . gene_id "ERV316A3_6_GL000254v2_alt(j)"; transcript_id "ERV316A3_6_GL000254v2_alt(j)"; locus "ERV316A3_6_GL000254v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2956"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "217"; chr6_GL000254v2_alt rmsk exon 1170704 1172079 2365 + . gene_id "ERV316A3_6_GL000254v2_alt(j)"; transcript_id "ERV316A3_6_GL000254v2_alt(j)"; locus "ERV316A3_6_GL000254v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2956"; repClass "LTR"; repEnd "2572"; repFamily "ERVL"; repLeft "-2654"; repStart "1062"; ### ERV316A3_6_GL000254v2_alt(k) ### chr6_GL000254v2_alt rmsk gene 1291015 1294517 . + . gene_id "ERV316A3_6_GL000254v2_alt(k)"; transcript_id "ERV316A3_6_GL000254v2_alt(k)"; locus "ERV316A3_6_GL000254v2_alt(k)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2957"; model_cov "3062"; model_pct "58.6"; chr6_GL000254v2_alt rmsk exon 1291015 1292839 3575 + . gene_id "ERV316A3_6_GL000254v2_alt(k)"; transcript_id "ERV316A3_6_GL000254v2_alt(k)"; locus "ERV316A3_6_GL000254v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2957"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000254v2_alt rmsk exon 1292848 1293694 1910 + . gene_id "ERV316A3_6_GL000254v2_alt(k)"; transcript_id "ERV316A3_6_GL000254v2_alt(k)"; locus "ERV316A3_6_GL000254v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2957"; repClass "LTR"; repEnd "4640"; repFamily "ERVL"; repLeft "-586"; repStart "3783"; chr6_GL000254v2_alt rmsk exon 1293730 1294120 1910 + . gene_id "ERV316A3_6_GL000254v2_alt(k)"; transcript_id "ERV316A3_6_GL000254v2_alt(k)"; locus "ERV316A3_6_GL000254v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2957"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4641"; chr6_GL000254v2_alt rmsk exon 1294129 1294517 1276 + . gene_id "ERV316A3_6_GL000254v2_alt(k)"; transcript_id "ERV316A3_6_GL000254v2_alt(k)"; locus "ERV316A3_6_GL000254v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2957"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 1306543 1314409 . + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0091"; model_cov "3803"; model_pct "50.1"; chr6_GL000254v2_alt rmsk exon 1306543 1306985 2809 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000254v2_alt rmsk exon 1308313 1308959 3887 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; chr6_GL000254v2_alt rmsk exon 1310455 1311180 5161 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000254v2_alt rmsk exon 1311479 1311606 5161 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000254v2_alt rmsk exon 1311623 1311831 1329 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-2127"; repStart "5243"; chr6_GL000254v2_alt rmsk exon 1311985 1312887 4817 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000254v2_alt rmsk exon 1313080 1313809 4055 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000254v2_alt rmsk exon 1314047 1314409 1941 + . gene_id "HERVP71A_6_GL000254v2_alt"; transcript_id "HERVP71A_6_GL000254v2_alt"; locus "HERVP71A_6_GL000254v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0091"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000254v2_alt(l) ### chr6_GL000254v2_alt rmsk gene 1342007 1347342 . + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2958"; model_cov "4034"; model_pct "77.2"; chr6_GL000254v2_alt rmsk exon 1342007 1342450 1359 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000254v2_alt rmsk exon 1342689 1342809 396 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "219"; chr6_GL000254v2_alt rmsk exon 1342827 1343076 402 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-4577"; repStart "372"; chr6_GL000254v2_alt rmsk exon 1343142 1344726 5120 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000254v2_alt rmsk exon 1345041 1345912 5120 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6_GL000254v2_alt rmsk exon 1345913 1347116 3045 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000254v2_alt rmsk exon 1347130 1347342 725 + . gene_id "ERV316A3_6_GL000254v2_alt(l)"; transcript_id "ERV316A3_6_GL000254v2_alt(l)"; locus "ERV316A3_6_GL000254v2_alt(l)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2958"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERVLE_6_GL000254v2_alt(a) ### chr6_GL000254v2_alt rmsk gene 1723966 1724590 . - . gene_id "ERVLE_6_GL000254v2_alt(a)"; transcript_id "ERVLE_6_GL000254v2_alt(a)"; locus "ERVLE_6_GL000254v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3843"; model_cov "653"; model_pct "11.5"; chr6_GL000254v2_alt rmsk exon 1723966 1724590 1289 - . gene_id "ERVLE_6_GL000254v2_alt(a)"; transcript_id "ERVLE_6_GL000254v2_alt(a)"; locus "ERVLE_6_GL000254v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3843"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### HERVL_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 2310513 2315971 . + . gene_id "HERVL_6_GL000254v2_alt"; transcript_id "HERVL_6_GL000254v2_alt"; locus "HERVL_6_GL000254v2_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1470"; model_cov "4774"; model_pct "84.4"; chr6_GL000254v2_alt rmsk exon 2310513 2311649 36490 + . gene_id "HERVL_6_GL000254v2_alt"; transcript_id "HERVL_6_GL000254v2_alt"; locus "HERVL_6_GL000254v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1470"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6_GL000254v2_alt rmsk exon 2311949 2315562 36490 + . gene_id "HERVL_6_GL000254v2_alt"; transcript_id "HERVL_6_GL000254v2_alt"; locus "HERVL_6_GL000254v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1470"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6_GL000254v2_alt rmsk exon 2315563 2315971 3154 + . gene_id "HERVL_6_GL000254v2_alt"; transcript_id "HERVL_6_GL000254v2_alt"; locus "HERVL_6_GL000254v2_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1470"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000254v2_alt(b) ### chr6_GL000254v2_alt rmsk gene 2381107 2385136 . - . gene_id "ERVLE_6_GL000254v2_alt(b)"; transcript_id "ERVLE_6_GL000254v2_alt(b)"; locus "ERVLE_6_GL000254v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3845"; model_cov "2617"; model_pct "46.2"; chr6_GL000254v2_alt rmsk exon 2381107 2382192 3466 - . gene_id "ERVLE_6_GL000254v2_alt(b)"; transcript_id "ERVLE_6_GL000254v2_alt(b)"; locus "ERVLE_6_GL000254v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3845"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000254v2_alt rmsk exon 2382237 2382383 376 - . gene_id "ERVLE_6_GL000254v2_alt(b)"; transcript_id "ERVLE_6_GL000254v2_alt(b)"; locus "ERVLE_6_GL000254v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3845"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000254v2_alt rmsk exon 2382844 2383629 1340 - . gene_id "ERVLE_6_GL000254v2_alt(b)"; transcript_id "ERVLE_6_GL000254v2_alt(b)"; locus "ERVLE_6_GL000254v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3845"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6_GL000254v2_alt rmsk exon 2384753 2385136 994 - . gene_id "ERVLE_6_GL000254v2_alt(b)"; transcript_id "ERVLE_6_GL000254v2_alt(b)"; locus "ERVLE_6_GL000254v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3845"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "362"; repStart "-4912"; ### HARLEQUIN_6_GL000254v2_alt(a) ### chr6_GL000254v2_alt rmsk gene 2526002 2530913 . - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0204"; model_cov "4527"; model_pct "65.6"; chr6_GL000254v2_alt rmsk exon 2526002 2526573 3716 - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0204"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "5886"; repStart "-422"; chr6_GL000254v2_alt rmsk exon 2526568 2528586 14738 - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0204"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000254v2_alt rmsk exon 2528586 2529557 6684 - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0204"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000254v2_alt rmsk exon 2529543 2530434 6354 - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0204"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr6_GL000254v2_alt rmsk exon 2530435 2530913 3838 - . gene_id "HARLEQUIN_6_GL000254v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(a)"; locus "HARLEQUIN_6_GL000254v2_alt(a)"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0204"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 2569985 2572694 . - . gene_id "HERV3_6_GL000254v2_alt"; transcript_id "HERV3_6_GL000254v2_alt"; locus "HERV3_6_GL000254v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0108"; model_cov "1870"; model_pct "22.2"; chr6_GL000254v2_alt rmsk exon 2569985 2570830 8757 - . gene_id "HERV3_6_GL000254v2_alt"; transcript_id "HERV3_6_GL000254v2_alt"; locus "HERV3_6_GL000254v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0108"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6502"; repStart "-1086"; chr6_GL000254v2_alt rmsk exon 2571132 2572111 8757 - . gene_id "HERV3_6_GL000254v2_alt"; transcript_id "HERV3_6_GL000254v2_alt"; locus "HERV3_6_GL000254v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0108"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6_GL000254v2_alt rmsk exon 2572113 2572232 866 - . gene_id "HERV3_6_GL000254v2_alt"; transcript_id "HERV3_6_GL000254v2_alt"; locus "HERV3_6_GL000254v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0108"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000254v2_alt rmsk exon 2572522 2572694 866 - . gene_id "HERV3_6_GL000254v2_alt"; transcript_id "HERV3_6_GL000254v2_alt"; locus "HERV3_6_GL000254v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0108"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 2576214 2580325 . - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0281"; model_cov "3520"; model_pct "58.5"; chr6_GL000254v2_alt rmsk exon 2576214 2576327 862 - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0281"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000254v2_alt rmsk exon 2576330 2576848 3949 - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0281"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4601"; repStart "-916"; chr6_GL000254v2_alt rmsk exon 2576836 2577065 1769 - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0281"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000254v2_alt rmsk exon 2577067 2579799 21531 - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0281"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000254v2_alt rmsk exon 2579812 2580325 4293 - . gene_id "HML3_6_GL000254v2_alt"; transcript_id "HML3_6_GL000254v2_alt"; locus "HML3_6_GL000254v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0281"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000254v2_alt(a) ### chr6_GL000254v2_alt rmsk gene 2587739 2589271 . - . gene_id "ERVLB4_6_GL000254v2_alt(a)"; transcript_id "ERVLB4_6_GL000254v2_alt(a)"; locus "ERVLB4_6_GL000254v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1988"; model_cov "867"; model_pct "15.2"; chr6_GL000254v2_alt rmsk exon 2587739 2588071 1373 - . gene_id "ERVLB4_6_GL000254v2_alt(a)"; transcript_id "ERVLB4_6_GL000254v2_alt(a)"; locus "ERVLB4_6_GL000254v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1988"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000254v2_alt rmsk exon 2588075 2588506 3851 - . gene_id "ERVLB4_6_GL000254v2_alt(a)"; transcript_id "ERVLB4_6_GL000254v2_alt(a)"; locus "ERVLB4_6_GL000254v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1988"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000254v2_alt rmsk exon 2588825 2589271 3851 - . gene_id "ERVLB4_6_GL000254v2_alt(a)"; transcript_id "ERVLB4_6_GL000254v2_alt(a)"; locus "ERVLB4_6_GL000254v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1988"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERVLE_6_GL000254v2_alt(c) ### chr6_GL000254v2_alt rmsk gene 2634146 2634781 . + . gene_id "ERVLE_6_GL000254v2_alt(c)"; transcript_id "ERVLE_6_GL000254v2_alt(c)"; locus "ERVLE_6_GL000254v2_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3846"; model_cov "643"; model_pct "11.3"; chr6_GL000254v2_alt rmsk exon 2634146 2634523 830 + . gene_id "ERVLE_6_GL000254v2_alt(c)"; transcript_id "ERVLE_6_GL000254v2_alt(c)"; locus "ERVLE_6_GL000254v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3846"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "-2087"; repStart "3173"; chr6_GL000254v2_alt rmsk exon 2634549 2634781 469 + . gene_id "ERVLE_6_GL000254v2_alt(c)"; transcript_id "ERVLE_6_GL000254v2_alt(c)"; locus "ERVLE_6_GL000254v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3846"; repClass "LTR"; repEnd "3885"; repFamily "ERVL"; repLeft "-1782"; repStart "3649"; ### ERV316A3_6_GL000254v2_alt(m) ### chr6_GL000254v2_alt rmsk gene 2643231 2644690 . + . gene_id "ERV316A3_6_GL000254v2_alt(m)"; transcript_id "ERV316A3_6_GL000254v2_alt(m)"; locus "ERV316A3_6_GL000254v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2959"; model_cov "1471"; model_pct "28.1"; chr6_GL000254v2_alt rmsk exon 2643231 2644690 3025 + . gene_id "ERV316A3_6_GL000254v2_alt(m)"; transcript_id "ERV316A3_6_GL000254v2_alt(m)"; locus "ERV316A3_6_GL000254v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2959"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000254v2_alt(b) ### chr6_GL000254v2_alt rmsk gene 2663145 2664580 . - . gene_id "ERVLB4_6_GL000254v2_alt(b)"; transcript_id "ERVLB4_6_GL000254v2_alt(b)"; locus "ERVLB4_6_GL000254v2_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1989"; model_cov "756"; model_pct "13.2"; chr6_GL000254v2_alt rmsk exon 2663145 2663483 1293 - . gene_id "ERVLB4_6_GL000254v2_alt(b)"; transcript_id "ERVLB4_6_GL000254v2_alt(b)"; locus "ERVLB4_6_GL000254v2_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1989"; repClass "LTR"; repEnd "282"; repFamily "ERVL"; repLeft "-66"; repStart "-115"; chr6_GL000254v2_alt rmsk exon 2663491 2663904 3062 - . gene_id "ERVLB4_6_GL000254v2_alt(b)"; transcript_id "ERVLB4_6_GL000254v2_alt(b)"; locus "ERVLB4_6_GL000254v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1989"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5295"; repStart "-9"; chr6_GL000254v2_alt rmsk exon 2664223 2664580 3062 - . gene_id "ERVLB4_6_GL000254v2_alt(b)"; transcript_id "ERVLB4_6_GL000254v2_alt(b)"; locus "ERVLB4_6_GL000254v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1989"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4948"; repStart "-420"; ### ERV316A3_6_GL000254v2_alt(n) ### chr6_GL000254v2_alt rmsk gene 2806319 2811015 . - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2960"; model_cov "3487"; model_pct "66.7"; chr6_GL000254v2_alt rmsk exon 2806319 2806906 1806 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "3776"; repStart "-850"; chr6_GL000254v2_alt rmsk exon 2806928 2807757 1831 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "3032"; repFamily "ERVL"; repLeft "2024"; repStart "-2194"; chr6_GL000254v2_alt rmsk exon 2808210 2809680 3564 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "989"; repStart "-2816"; chr6_GL000254v2_alt rmsk exon 2810024 2810174 3564 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "988"; repFamily "ERVL"; repLeft "832"; repStart "-4238"; chr6_GL000254v2_alt rmsk exon 2810335 2810616 772 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "219"; repStart "-4705"; chr6_GL000254v2_alt rmsk exon 2810853 2811015 1171 - . gene_id "ERV316A3_6_GL000254v2_alt(n)"; transcript_id "ERV316A3_6_GL000254v2_alt(n)"; locus "ERV316A3_6_GL000254v2_alt(n)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2960"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "323"; repStart "0"; ### HERVKC4_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 3359466 3365826 . - . gene_id "HERVKC4_6_GL000254v2_alt"; transcript_id "HERVKC4_6_GL000254v2_alt"; locus "HERVKC4_6_GL000254v2_alt"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0028"; model_cov "5261"; model_pct "100.0"; chr6_GL000254v2_alt rmsk exon 3359466 3360015 4163 - . gene_id "HERVKC4_6_GL000254v2_alt"; transcript_id "HERVKC4_6_GL000254v2_alt"; locus "HERVKC4_6_GL000254v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0028"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000254v2_alt rmsk exon 3360016 3365278 42591 - . gene_id "HERVKC4_6_GL000254v2_alt"; transcript_id "HERVKC4_6_GL000254v2_alt"; locus "HERVKC4_6_GL000254v2_alt"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0028"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000254v2_alt rmsk exon 3365279 3365826 5162 - . gene_id "HERVKC4_6_GL000254v2_alt"; transcript_id "HERVKC4_6_GL000254v2_alt"; locus "HERVKC4_6_GL000254v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0028"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 3716088 3718225 . + . gene_id "HUERSP2_6_GL000254v2_alt"; transcript_id "HUERSP2_6_GL000254v2_alt"; locus "HUERSP2_6_GL000254v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0137"; model_cov "1234"; model_pct "40.0"; chr6_GL000254v2_alt rmsk exon 3716088 3717062 6686 + . gene_id "HUERSP2_6_GL000254v2_alt"; transcript_id "HUERSP2_6_GL000254v2_alt"; locus "HUERSP2_6_GL000254v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0137"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000254v2_alt rmsk exon 3717139 3717387 1615 + . gene_id "HUERSP2_6_GL000254v2_alt"; transcript_id "HUERSP2_6_GL000254v2_alt"; locus "HUERSP2_6_GL000254v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0137"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000254v2_alt rmsk exon 3717390 3718225 5318 + . gene_id "HUERSP2_6_GL000254v2_alt"; transcript_id "HUERSP2_6_GL000254v2_alt"; locus "HUERSP2_6_GL000254v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0137"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 3816357 3820459 . - . gene_id "HML6_6_GL000254v2_alt"; transcript_id "HML6_6_GL000254v2_alt"; locus "HML6_6_GL000254v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0139"; model_cov "3408"; model_pct "47.3"; chr6_GL000254v2_alt rmsk exon 3816357 3818197 23130 - . gene_id "HML6_6_GL000254v2_alt"; transcript_id "HML6_6_GL000254v2_alt"; locus "HML6_6_GL000254v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0139"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000254v2_alt rmsk exon 3818495 3820004 23130 - . gene_id "HML6_6_GL000254v2_alt"; transcript_id "HML6_6_GL000254v2_alt"; locus "HML6_6_GL000254v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0139"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000254v2_alt rmsk exon 3820039 3820459 2468 - . gene_id "HML6_6_GL000254v2_alt"; transcript_id "HML6_6_GL000254v2_alt"; locus "HML6_6_GL000254v2_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0139"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 3982001 3984533 . - . gene_id "HUERSP3_6_GL000254v2_alt"; transcript_id "HUERSP3_6_GL000254v2_alt"; locus "HUERSP3_6_GL000254v2_alt"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0281"; model_cov "993"; model_pct "11.1"; chr6_GL000254v2_alt rmsk exon 3982001 3982609 3305 - . gene_id "HUERSP3_6_GL000254v2_alt"; transcript_id "HUERSP3_6_GL000254v2_alt"; locus "HUERSP3_6_GL000254v2_alt"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0281"; repClass "LTR"; repEnd "728"; repFamily "ERV1"; repLeft "23"; repStart "0"; chr6_GL000254v2_alt rmsk exon 3982905 3982937 3305 - . gene_id "HUERSP3_6_GL000254v2_alt"; transcript_id "HUERSP3_6_GL000254v2_alt"; locus "HUERSP3_6_GL000254v2_alt"; repName "LTR9A1"; geneRegion "ltr"; locid "HUERS-P3-int_0281"; repClass "LTR"; repEnd "22"; repFamily "ERV1"; repLeft "2"; repStart "-706"; chr6_GL000254v2_alt rmsk exon 3982940 3983173 1418 - . gene_id "HUERSP3_6_GL000254v2_alt"; transcript_id "HUERSP3_6_GL000254v2_alt"; locus "HUERSP3_6_GL000254v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0281"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000254v2_alt rmsk exon 3983617 3984533 4252 - . gene_id "HUERSP3_6_GL000254v2_alt"; transcript_id "HUERSP3_6_GL000254v2_alt"; locus "HUERSP3_6_GL000254v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0281"; repClass "LTR"; repEnd "7013"; repFamily "ERV1"; repLeft "6238"; repStart "-1906"; ### HERVFH19_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 4006205 4008038 . + . gene_id "HERVFH19_6_GL000254v2_alt"; transcript_id "HERVFH19_6_GL000254v2_alt"; locus "HERVFH19_6_GL000254v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0064"; model_cov "1375"; model_pct "17.8"; chr6_GL000254v2_alt rmsk exon 4006205 4007568 9866 + . gene_id "HERVFH19_6_GL000254v2_alt"; transcript_id "HERVFH19_6_GL000254v2_alt"; locus "HERVFH19_6_GL000254v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0064"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6344"; chr6_GL000254v2_alt rmsk exon 4007569 4008038 3419 + . gene_id "HERVFH19_6_GL000254v2_alt"; transcript_id "HERVFH19_6_GL000254v2_alt"; locus "HERVFH19_6_GL000254v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0064"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML5_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 4348292 4355579 . + . gene_id "HML5_6_GL000254v2_alt"; transcript_id "HML5_6_GL000254v2_alt"; locus "HML5_6_GL000254v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0183"; model_cov "6805"; model_pct "99.5"; chr6_GL000254v2_alt rmsk exon 4348292 4348756 2743 + . gene_id "HML5_6_GL000254v2_alt"; transcript_id "HML5_6_GL000254v2_alt"; locus "HML5_6_GL000254v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0183"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000254v2_alt rmsk exon 4348759 4355579 52402 + . gene_id "HML5_6_GL000254v2_alt"; transcript_id "HML5_6_GL000254v2_alt"; locus "HML5_6_GL000254v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0183"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### HERVH_6_GL000254v2_alt ### chr6_GL000254v2_alt rmsk gene 4781847 4787738 . + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1334"; model_cov "5066"; model_pct "65.7"; chr6_GL000254v2_alt rmsk exon 4781847 4783007 7164 + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1334"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6_GL000254v2_alt rmsk exon 4783008 4784845 11527 + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1334"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6_GL000254v2_alt rmsk exon 4784843 4786745 13297 + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1334"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6_GL000254v2_alt rmsk exon 4787136 4787351 1321 + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1334"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7490"; chr6_GL000254v2_alt rmsk exon 4787352 4787738 2757 + . gene_id "HERVH_6_GL000254v2_alt"; transcript_id "HERVH_6_GL000254v2_alt"; locus "HERVH_6_GL000254v2_alt"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1334"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6_GL000254v2_alt(b) ### chr6_GL000254v2_alt rmsk gene 4787819 4791177 . - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0205"; model_cov "2118"; model_pct "30.7"; chr6_GL000254v2_alt rmsk exon 4787819 4789533 16121 - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0205"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6_GL000254v2_alt rmsk exon 4789828 4789905 16121 - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0205"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6_GL000254v2_alt rmsk exon 4790216 4790240 16121 - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0205"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6_GL000254v2_alt rmsk exon 4790542 4790731 16121 - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0205"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6_GL000254v2_alt rmsk exon 4791038 4791177 16121 - . gene_id "HARLEQUIN_6_GL000254v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000254v2_alt(b)"; locus "HARLEQUIN_6_GL000254v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0205"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2035"; repStart "-4726"; ### HERVS71_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 31772 42095 . - . gene_id "HERVS71_6_GL000255v2_alt"; transcript_id "HERVS71_6_GL000255v2_alt"; locus "HERVS71_6_GL000255v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0070"; model_cov "8932"; model_pct "99.5"; chr6_GL000255v2_alt rmsk exon 31772 32313 3660 - . gene_id "HERVS71_6_GL000255v2_alt"; transcript_id "HERVS71_6_GL000255v2_alt"; locus "HERVS71_6_GL000255v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0070"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000255v2_alt rmsk exon 32324 39542 60739 - . gene_id "HERVS71_6_GL000255v2_alt"; transcript_id "HERVS71_6_GL000255v2_alt"; locus "HERVS71_6_GL000255v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0070"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000255v2_alt rmsk exon 39835 41550 60739 - . gene_id "HERVS71_6_GL000255v2_alt"; transcript_id "HERVS71_6_GL000255v2_alt"; locus "HERVS71_6_GL000255v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0070"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000255v2_alt rmsk exon 41553 42095 3658 - . gene_id "HERVS71_6_GL000255v2_alt"; transcript_id "HERVS71_6_GL000255v2_alt"; locus "HERVS71_6_GL000255v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0070"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 133855 141451 . - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0214"; model_cov "4258"; model_pct "79.7"; chr6_GL000255v2_alt rmsk exon 133855 134242 2502 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000255v2_alt rmsk exon 134243 134903 9017 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000255v2_alt rmsk exon 135205 135876 9017 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000255v2_alt rmsk exon 136178 136215 9017 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000255v2_alt rmsk exon 136204 136321 788 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000255v2_alt rmsk exon 136313 137449 7614 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000255v2_alt rmsk exon 138736 139530 10238 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000255v2_alt rmsk exon 139843 140148 10238 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6_GL000255v2_alt rmsk exon 140759 141266 10238 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6_GL000255v2_alt rmsk exon 141267 141451 2524 - . gene_id "LTR57_6_GL000255v2_alt"; transcript_id "LTR57_6_GL000255v2_alt"; locus "LTR57_6_GL000255v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0214"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 408063 408847 . - . gene_id "MER41_6_GL000255v2_alt(a)"; transcript_id "MER41_6_GL000255v2_alt(a)"; locus "MER41_6_GL000255v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0656"; model_cov "786"; model_pct "13.2"; chr6_GL000255v2_alt rmsk exon 408063 408847 5165 - . gene_id "MER41_6_GL000255v2_alt(a)"; transcript_id "MER41_6_GL000255v2_alt(a)"; locus "MER41_6_GL000255v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0656"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 408853 410090 . + . gene_id "MER41_6_GL000255v2_alt(b)"; transcript_id "MER41_6_GL000255v2_alt(b)"; locus "MER41_6_GL000255v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0657"; model_cov "745"; model_pct "12.5"; chr6_GL000255v2_alt rmsk exon 408853 409584 4945 + . gene_id "MER41_6_GL000255v2_alt(b)"; transcript_id "MER41_6_GL000255v2_alt(b)"; locus "MER41_6_GL000255v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0657"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000255v2_alt rmsk exon 409585 410090 2684 + . gene_id "MER41_6_GL000255v2_alt(b)"; transcript_id "MER41_6_GL000255v2_alt(b)"; locus "MER41_6_GL000255v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0657"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 474743 478140 . + . gene_id "ERV316A3_6_GL000255v2_alt(a)"; transcript_id "ERV316A3_6_GL000255v2_alt(a)"; locus "ERV316A3_6_GL000255v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2962"; model_cov "2675"; model_pct "51.2"; chr6_GL000255v2_alt rmsk exon 474743 475456 1880 + . gene_id "ERV316A3_6_GL000255v2_alt(a)"; transcript_id "ERV316A3_6_GL000255v2_alt(a)"; locus "ERV316A3_6_GL000255v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2962"; repClass "LTR"; repEnd "3272"; repFamily "ERVL"; repLeft "-1954"; repStart "2542"; chr6_GL000255v2_alt rmsk exon 475524 477163 3978 + . gene_id "ERV316A3_6_GL000255v2_alt(a)"; transcript_id "ERV316A3_6_GL000255v2_alt(a)"; locus "ERV316A3_6_GL000255v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2962"; repClass "LTR"; repEnd "4656"; repFamily "ERVL"; repLeft "-570"; repStart "3020"; chr6_GL000255v2_alt rmsk exon 477187 477459 661 + . gene_id "ERV316A3_6_GL000255v2_alt(a)"; transcript_id "ERV316A3_6_GL000255v2_alt(a)"; locus "ERV316A3_6_GL000255v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2962"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000255v2_alt rmsk exon 477691 478140 1205 + . gene_id "ERV316A3_6_GL000255v2_alt(a)"; transcript_id "ERV316A3_6_GL000255v2_alt(a)"; locus "ERV316A3_6_GL000255v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2962"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 511071 516303 . - . gene_id "HERVH_6_GL000255v2_alt(a)"; transcript_id "HERVH_6_GL000255v2_alt(a)"; locus "HERVH_6_GL000255v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1335"; model_cov "4727"; model_pct "61.3"; chr6_GL000255v2_alt rmsk exon 511071 511509 2416 - . gene_id "HERVH_6_GL000255v2_alt(a)"; transcript_id "HERVH_6_GL000255v2_alt(a)"; locus "HERVH_6_GL000255v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1335"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000255v2_alt rmsk exon 511510 512233 4396 - . gene_id "HERVH_6_GL000255v2_alt(a)"; transcript_id "HERVH_6_GL000255v2_alt(a)"; locus "HERVH_6_GL000255v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1335"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6_GL000255v2_alt rmsk exon 512228 516303 9168 - . gene_id "HERVH_6_GL000255v2_alt(a)"; transcript_id "HERVH_6_GL000255v2_alt(a)"; locus "HERVH_6_GL000255v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1335"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "1825"; repStart "-1878"; ### MER4_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 787324 792867 . - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1018"; model_cov "3139"; model_pct "47.6"; chr6_GL000255v2_alt rmsk exon 787324 788975 8673 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1018"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000255v2_alt rmsk exon 789272 789879 8673 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1018"; repClass "LTR"; repEnd "3161"; repFamily "ERV1"; repLeft "2735"; repStart "-3437"; chr6_GL000255v2_alt rmsk exon 789867 789943 2125 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1018"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000255v2_alt rmsk exon 790467 791311 2125 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1018"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000255v2_alt rmsk exon 792363 792444 482 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1018"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000255v2_alt rmsk exon 792448 792867 2471 - . gene_id "MER4_6_GL000255v2_alt"; transcript_id "MER4_6_GL000255v2_alt"; locus "MER4_6_GL000255v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1018"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 845143 849629 . - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2963"; model_cov "1992"; model_pct "38.1"; chr6_GL000255v2_alt rmsk exon 845143 845852 3412 - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2963"; repClass "LTR"; repEnd "4068"; repFamily "ERVL"; repLeft "3380"; repStart "-1158"; chr6_GL000255v2_alt rmsk exon 846377 846995 3412 - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2963"; repClass "LTR"; repEnd "3379"; repFamily "ERVL"; repLeft "2789"; repStart "-1847"; chr6_GL000255v2_alt rmsk exon 847310 847493 566 - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2963"; repClass "LTR"; repEnd "2695"; repFamily "ERVL"; repLeft "2515"; repStart "-2531"; chr6_GL000255v2_alt rmsk exon 848766 848916 793 - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2963"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "2381"; repStart "-2708"; chr6_GL000255v2_alt rmsk exon 849212 849629 890 - . gene_id "ERV316A3_6_GL000255v2_alt(b)"; transcript_id "ERV316A3_6_GL000255v2_alt(b)"; locus "ERV316A3_6_GL000255v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2963"; repClass "LTR"; repEnd "1986"; repFamily "ERVL"; repLeft "1589"; repStart "-3240"; ### HERVL40_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 949178 949975 . + . gene_id "HERVL40_6_GL000255v2_alt"; transcript_id "HERVL40_6_GL000255v2_alt"; locus "HERVL40_6_GL000255v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0500"; model_cov "718"; model_pct "13.0"; chr6_GL000255v2_alt rmsk exon 949178 949641 1156 + . gene_id "HERVL40_6_GL000255v2_alt"; transcript_id "HERVL40_6_GL000255v2_alt"; locus "HERVL40_6_GL000255v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0500"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "-4697"; repStart "415"; chr6_GL000255v2_alt rmsk exon 949715 949975 593 + . gene_id "HERVL40_6_GL000255v2_alt"; transcript_id "HERVL40_6_GL000255v2_alt"; locus "HERVL40_6_GL000255v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0500"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "924"; ### ERV316A3_6_GL000255v2_alt(c) ### chr6_GL000255v2_alt rmsk gene 976353 980668 . + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2964"; model_cov "3967"; model_pct "75.9"; chr6_GL000255v2_alt rmsk exon 976353 976447 335 + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2964"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000255v2_alt rmsk exon 976472 978172 3692 + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2964"; repClass "LTR"; repEnd "2518"; repFamily "ERVL"; repLeft "-2708"; repStart "832"; chr6_GL000255v2_alt rmsk exon 978316 979069 1435 + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2964"; repClass "LTR"; repEnd "3053"; repFamily "ERVL"; repLeft "-2173"; repStart "2079"; chr6_GL000255v2_alt rmsk exon 979071 980286 3653 + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2964"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000255v2_alt rmsk exon 980290 980668 1035 + . gene_id "ERV316A3_6_GL000255v2_alt(c)"; transcript_id "ERV316A3_6_GL000255v2_alt(c)"; locus "ERV316A3_6_GL000255v2_alt(c)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2964"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000255v2_alt(d) ### chr6_GL000255v2_alt rmsk gene 1030793 1035936 . + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2965"; model_cov "4121"; model_pct "78.9"; chr6_GL000255v2_alt rmsk exon 1030793 1031226 1254 + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2965"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000255v2_alt rmsk exon 1031477 1031907 940 + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2965"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-4517"; repStart "233"; chr6_GL000255v2_alt rmsk exon 1031912 1034356 4699 + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2965"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000255v2_alt rmsk exon 1034363 1035562 3072 + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2965"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000255v2_alt rmsk exon 1035565 1035936 1101 + . gene_id "ERV316A3_6_GL000255v2_alt(d)"; transcript_id "ERV316A3_6_GL000255v2_alt(d)"; locus "ERV316A3_6_GL000255v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2965"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000255v2_alt(e) ### chr6_GL000255v2_alt rmsk gene 1056090 1057315 . + . gene_id "ERV316A3_6_GL000255v2_alt(e)"; transcript_id "ERV316A3_6_GL000255v2_alt(e)"; locus "ERV316A3_6_GL000255v2_alt(e)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2966"; model_cov "862"; model_pct "16.5"; chr6_GL000255v2_alt rmsk exon 1056090 1056931 1852 + . gene_id "ERV316A3_6_GL000255v2_alt(e)"; transcript_id "ERV316A3_6_GL000255v2_alt(e)"; locus "ERV316A3_6_GL000255v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2966"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000255v2_alt rmsk exon 1056935 1057315 1310 + . gene_id "ERV316A3_6_GL000255v2_alt(e)"; transcript_id "ERV316A3_6_GL000255v2_alt(e)"; locus "ERV316A3_6_GL000255v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2966"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000255v2_alt(f) ### chr6_GL000255v2_alt rmsk gene 1078722 1081461 . + . gene_id "ERV316A3_6_GL000255v2_alt(f)"; transcript_id "ERV316A3_6_GL000255v2_alt(f)"; locus "ERV316A3_6_GL000255v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2967"; model_cov "2330"; model_pct "44.6"; chr6_GL000255v2_alt rmsk exon 1078722 1079855 2778 + . gene_id "ERV316A3_6_GL000255v2_alt(f)"; transcript_id "ERV316A3_6_GL000255v2_alt(f)"; locus "ERV316A3_6_GL000255v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2967"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000255v2_alt rmsk exon 1079856 1081065 3033 + . gene_id "ERV316A3_6_GL000255v2_alt(f)"; transcript_id "ERV316A3_6_GL000255v2_alt(f)"; locus "ERV316A3_6_GL000255v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2967"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000255v2_alt rmsk exon 1081069 1081461 1261 + . gene_id "ERV316A3_6_GL000255v2_alt(f)"; transcript_id "ERV316A3_6_GL000255v2_alt(f)"; locus "ERV316A3_6_GL000255v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2967"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000255v2_alt(g) ### chr6_GL000255v2_alt rmsk gene 1131162 1136638 . + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2968"; model_cov "4204"; model_pct "80.4"; chr6_GL000255v2_alt rmsk exon 1131162 1131599 1261 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000255v2_alt rmsk exon 1131602 1132145 390 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "796"; repFamily "ERVL"; repLeft "-4430"; repStart "233"; chr6_GL000255v2_alt rmsk exon 1132281 1134135 5442 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000255v2_alt rmsk exon 1134429 1135035 5442 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000255v2_alt rmsk exon 1135036 1136240 3479 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000255v2_alt rmsk exon 1136251 1136638 1137 + . gene_id "ERV316A3_6_GL000255v2_alt(g)"; transcript_id "ERV316A3_6_GL000255v2_alt(g)"; locus "ERV316A3_6_GL000255v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2968"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000255v2_alt(h) ### chr6_GL000255v2_alt rmsk gene 1148986 1150415 . + . gene_id "ERV316A3_6_GL000255v2_alt(h)"; transcript_id "ERV316A3_6_GL000255v2_alt(h)"; locus "ERV316A3_6_GL000255v2_alt(h)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2969"; model_cov "1435"; model_pct "27.5"; chr6_GL000255v2_alt rmsk exon 1148986 1149257 377 + . gene_id "ERV316A3_6_GL000255v2_alt(h)"; transcript_id "ERV316A3_6_GL000255v2_alt(h)"; locus "ERV316A3_6_GL000255v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2969"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "995"; chr6_GL000255v2_alt rmsk exon 1149256 1150415 2912 + . gene_id "ERV316A3_6_GL000255v2_alt(h)"; transcript_id "ERV316A3_6_GL000255v2_alt(h)"; locus "ERV316A3_6_GL000255v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2969"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000255v2_alt(i) ### chr6_GL000255v2_alt rmsk gene 1169586 1175046 . + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2970"; model_cov "4118"; model_pct "78.8"; chr6_GL000255v2_alt rmsk exon 1169586 1170028 1165 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000255v2_alt rmsk exon 1170150 1170603 705 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "101"; chr6_GL000255v2_alt rmsk exon 1170713 1173184 5210 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000255v2_alt rmsk exon 1173185 1173754 1387 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000255v2_alt rmsk exon 1174047 1174662 1430 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "4994"; repFamily "ERVL"; repLeft "-232"; repStart "4393"; chr6_GL000255v2_alt rmsk exon 1174665 1175046 1291 + . gene_id "ERV316A3_6_GL000255v2_alt(i)"; transcript_id "ERV316A3_6_GL000255v2_alt(i)"; locus "ERV316A3_6_GL000255v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2970"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000255v2_alt(j) ### chr6_GL000255v2_alt rmsk gene 1201891 1205436 . + . gene_id "ERV316A3_6_GL000255v2_alt(j)"; transcript_id "ERV316A3_6_GL000255v2_alt(j)"; locus "ERV316A3_6_GL000255v2_alt(j)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2973"; model_cov "3066"; model_pct "58.7"; chr6_GL000255v2_alt rmsk exon 1201891 1203730 3607 + . gene_id "ERV316A3_6_GL000255v2_alt(j)"; transcript_id "ERV316A3_6_GL000255v2_alt(j)"; locus "ERV316A3_6_GL000255v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2973"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1409"; chr6_GL000255v2_alt rmsk exon 1203739 1204589 2065 + . gene_id "ERV316A3_6_GL000255v2_alt(j)"; transcript_id "ERV316A3_6_GL000255v2_alt(j)"; locus "ERV316A3_6_GL000255v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2973"; repClass "LTR"; repEnd "4616"; repFamily "ERVL"; repLeft "-610"; repStart "3783"; chr6_GL000255v2_alt rmsk exon 1204649 1205039 2065 + . gene_id "ERV316A3_6_GL000255v2_alt(j)"; transcript_id "ERV316A3_6_GL000255v2_alt(j)"; locus "ERV316A3_6_GL000255v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2973"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4617"; chr6_GL000255v2_alt rmsk exon 1205048 1205436 1194 + . gene_id "ERV316A3_6_GL000255v2_alt(j)"; transcript_id "ERV316A3_6_GL000255v2_alt(j)"; locus "ERV316A3_6_GL000255v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2973"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "63"; ### HERVP71A_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 1217473 1225349 . + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0093"; model_cov "3803"; model_pct "50.1"; chr6_GL000255v2_alt rmsk exon 1217473 1217919 2794 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000255v2_alt rmsk exon 1219255 1219901 3857 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "1757"; repFamily "ERV1"; repLeft "-5833"; repStart "1116"; chr6_GL000255v2_alt rmsk exon 1221379 1222104 5147 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000255v2_alt rmsk exon 1222404 1222531 5147 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000255v2_alt rmsk exon 1222548 1222756 1319 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-2127"; repStart "5243"; chr6_GL000255v2_alt rmsk exon 1222910 1223812 4782 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000255v2_alt rmsk exon 1224013 1224746 3994 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000255v2_alt rmsk exon 1224987 1225349 1966 + . gene_id "HERVP71A_6_GL000255v2_alt"; transcript_id "HERVP71A_6_GL000255v2_alt"; locus "HERVP71A_6_GL000255v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0093"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000255v2_alt(k) ### chr6_GL000255v2_alt rmsk gene 1252951 1258349 . + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2974"; model_cov "4237"; model_pct "81.1"; chr6_GL000255v2_alt rmsk exon 1252951 1253394 1283 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000255v2_alt rmsk exon 1253633 1253960 702 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "-4662"; repStart "219"; chr6_GL000255v2_alt rmsk exon 1254086 1255669 5279 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "2419"; repFamily "ERVL"; repLeft "-2807"; repStart "838"; chr6_GL000255v2_alt rmsk exon 1256080 1256956 5279 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "2993"; repFamily "ERVL"; repLeft "-2233"; repStart "1889"; chr6_GL000255v2_alt rmsk exon 1256953 1258166 3127 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000255v2_alt rmsk exon 1258170 1258349 756 + . gene_id "ERV316A3_6_GL000255v2_alt(k)"; transcript_id "ERV316A3_6_GL000255v2_alt(k)"; locus "ERV316A3_6_GL000255v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2974"; repClass "LTR"; repEnd "238"; repFamily "ERVL"; repLeft "-224"; repStart "57"; ### ERV316A3_6_GL000255v2_alt(l) ### chr6_GL000255v2_alt rmsk gene 1531153 1532568 . + . gene_id "ERV316A3_6_GL000255v2_alt(l)"; transcript_id "ERV316A3_6_GL000255v2_alt(l)"; locus "ERV316A3_6_GL000255v2_alt(l)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2975"; model_cov "1396"; model_pct "26.7"; chr6_GL000255v2_alt rmsk exon 1531153 1532568 2397 + . gene_id "ERV316A3_6_GL000255v2_alt(l)"; transcript_id "ERV316A3_6_GL000255v2_alt(l)"; locus "ERV316A3_6_GL000255v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2975"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 1635008 1635632 . - . gene_id "ERVLE_6_GL000255v2_alt(a)"; transcript_id "ERVLE_6_GL000255v2_alt(a)"; locus "ERVLE_6_GL000255v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3852"; model_cov "653"; model_pct "11.5"; chr6_GL000255v2_alt rmsk exon 1635008 1635632 1310 - . gene_id "ERVLE_6_GL000255v2_alt(a)"; transcript_id "ERVLE_6_GL000255v2_alt(a)"; locus "ERVLE_6_GL000255v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3852"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### HERVL_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 2221527 2226983 . + . gene_id "HERVL_6_GL000255v2_alt"; transcript_id "HERVL_6_GL000255v2_alt"; locus "HERVL_6_GL000255v2_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1472"; model_cov "4774"; model_pct "84.4"; chr6_GL000255v2_alt rmsk exon 2221527 2222663 38389 + . gene_id "HERVL_6_GL000255v2_alt"; transcript_id "HERVL_6_GL000255v2_alt"; locus "HERVL_6_GL000255v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1472"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3626"; repStart "879"; chr6_GL000255v2_alt rmsk exon 2222961 2226574 38389 + . gene_id "HERVL_6_GL000255v2_alt"; transcript_id "HERVL_6_GL000255v2_alt"; locus "HERVL_6_GL000255v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1472"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "2029"; chr6_GL000255v2_alt rmsk exon 2226575 2226983 3137 + . gene_id "HERVL_6_GL000255v2_alt"; transcript_id "HERVL_6_GL000255v2_alt"; locus "HERVL_6_GL000255v2_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1472"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERVLE_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 2292603 2296654 . - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3854"; model_cov "2673"; model_pct "47.2"; chr6_GL000255v2_alt rmsk exon 2292603 2293688 3768 - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3854"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000255v2_alt rmsk exon 2293733 2293879 403 - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3854"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000255v2_alt rmsk exon 2294340 2295125 1457 - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3854"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6_GL000255v2_alt rmsk exon 2295425 2295462 1059 - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3854"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "756"; repStart "-4878"; chr6_GL000255v2_alt rmsk exon 2296250 2296654 1059 - . gene_id "ERVLE_6_GL000255v2_alt(b)"; transcript_id "ERVLE_6_GL000255v2_alt(b)"; locus "ERVLE_6_GL000255v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3854"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "339"; repStart "-4912"; ### HARLEQUIN_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 2439910 2444814 . - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0206"; model_cov "4527"; model_pct "65.6"; chr6_GL000255v2_alt rmsk exon 2439910 2440482 3734 - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0206"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "5886"; repStart "-422"; chr6_GL000255v2_alt rmsk exon 2440477 2442493 14763 - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0206"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000255v2_alt rmsk exon 2442493 2443466 6512 - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0206"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000255v2_alt rmsk exon 2443452 2444335 6553 - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0206"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr6_GL000255v2_alt rmsk exon 2444336 2444814 4013 - . gene_id "HARLEQUIN_6_GL000255v2_alt(a)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(a)"; locus "HARLEQUIN_6_GL000255v2_alt(a)"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0206"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 2483850 2485401 . - . gene_id "HERV3_6_GL000255v2_alt"; transcript_id "HERV3_6_GL000255v2_alt"; locus "HERV3_6_GL000255v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0109"; model_cov "1032"; model_pct "12.2"; chr6_GL000255v2_alt rmsk exon 2483850 2484821 5223 - . gene_id "HERV3_6_GL000255v2_alt"; transcript_id "HERV3_6_GL000255v2_alt"; locus "HERV3_6_GL000255v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0109"; repClass "LTR"; repEnd "6501"; repFamily "ERV1"; repLeft "5469"; repStart "-1925"; chr6_GL000255v2_alt rmsk exon 2484823 2484943 850 - . gene_id "HERV3_6_GL000255v2_alt"; transcript_id "HERV3_6_GL000255v2_alt"; locus "HERV3_6_GL000255v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0109"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000255v2_alt rmsk exon 2485233 2485401 850 - . gene_id "HERV3_6_GL000255v2_alt"; transcript_id "HERV3_6_GL000255v2_alt"; locus "HERV3_6_GL000255v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0109"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 2488917 2493034 . - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0282"; model_cov "3527"; model_pct "58.6"; chr6_GL000255v2_alt rmsk exon 2488917 2489030 882 - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0282"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000255v2_alt rmsk exon 2489033 2489545 3998 - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0282"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4594"; repStart "-916"; chr6_GL000255v2_alt rmsk exon 2489545 2489774 1760 - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0282"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000255v2_alt rmsk exon 2489776 2492508 21444 - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0282"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000255v2_alt rmsk exon 2492521 2493034 4276 - . gene_id "HML3_6_GL000255v2_alt"; transcript_id "HML3_6_GL000255v2_alt"; locus "HML3_6_GL000255v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0282"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 2500450 2501989 . - . gene_id "ERVLB4_6_GL000255v2_alt(a)"; transcript_id "ERVLB4_6_GL000255v2_alt(a)"; locus "ERVLB4_6_GL000255v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1991"; model_cov "867"; model_pct "15.2"; chr6_GL000255v2_alt rmsk exon 2500450 2500782 1350 - . gene_id "ERVLB4_6_GL000255v2_alt(a)"; transcript_id "ERVLB4_6_GL000255v2_alt(a)"; locus "ERVLB4_6_GL000255v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1991"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000255v2_alt rmsk exon 2500786 2501217 3836 - . gene_id "ERVLB4_6_GL000255v2_alt(a)"; transcript_id "ERVLB4_6_GL000255v2_alt(a)"; locus "ERVLB4_6_GL000255v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1991"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000255v2_alt rmsk exon 2501543 2501989 3836 - . gene_id "ERVLB4_6_GL000255v2_alt(a)"; transcript_id "ERVLB4_6_GL000255v2_alt(a)"; locus "ERVLB4_6_GL000255v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1991"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERV316A3_6_GL000255v2_alt(m) ### chr6_GL000255v2_alt rmsk gene 2556205 2557647 . + . gene_id "ERV316A3_6_GL000255v2_alt(m)"; transcript_id "ERV316A3_6_GL000255v2_alt(m)"; locus "ERV316A3_6_GL000255v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2976"; model_cov "1471"; model_pct "28.1"; chr6_GL000255v2_alt rmsk exon 2556205 2557647 2940 + . gene_id "ERV316A3_6_GL000255v2_alt(m)"; transcript_id "ERV316A3_6_GL000255v2_alt(m)"; locus "ERV316A3_6_GL000255v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2976"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 2576112 2577602 . - . gene_id "ERVLB4_6_GL000255v2_alt(b)"; transcript_id "ERVLB4_6_GL000255v2_alt(b)"; locus "ERVLB4_6_GL000255v2_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1992"; model_cov "833"; model_pct "14.6"; chr6_GL000255v2_alt rmsk exon 2576112 2576449 1283 - . gene_id "ERVLB4_6_GL000255v2_alt(b)"; transcript_id "ERVLB4_6_GL000255v2_alt(b)"; locus "ERVLB4_6_GL000255v2_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1992"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-66"; repStart "-116"; chr6_GL000255v2_alt rmsk exon 2576457 2576853 3249 - . gene_id "ERVLB4_6_GL000255v2_alt(b)"; transcript_id "ERVLB4_6_GL000255v2_alt(b)"; locus "ERVLB4_6_GL000255v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1992"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5295"; repStart "-9"; chr6_GL000255v2_alt rmsk exon 2577172 2577602 3249 - . gene_id "ERVLB4_6_GL000255v2_alt(b)"; transcript_id "ERVLB4_6_GL000255v2_alt(b)"; locus "ERVLB4_6_GL000255v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1992"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4871"; repStart "-420"; ### ERVLB4_6_GL000255v2_alt(c) ### chr6_GL000255v2_alt rmsk gene 2632023 2632813 . - . gene_id "ERVLB4_6_GL000255v2_alt(c)"; transcript_id "ERVLB4_6_GL000255v2_alt(c)"; locus "ERVLB4_6_GL000255v2_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1994"; model_cov "809"; model_pct "14.2"; chr6_GL000255v2_alt rmsk exon 2632023 2632813 2597 - . gene_id "ERVLB4_6_GL000255v2_alt(c)"; transcript_id "ERVLB4_6_GL000255v2_alt(c)"; locus "ERVLB4_6_GL000255v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1994"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "75"; repStart "-4830"; ### ERV316A3_6_GL000255v2_alt(n) ### chr6_GL000255v2_alt rmsk gene 2639422 2642965 . - . gene_id "ERV316A3_6_GL000255v2_alt(n)"; transcript_id "ERV316A3_6_GL000255v2_alt(n)"; locus "ERV316A3_6_GL000255v2_alt(n)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2977"; model_cov "3041"; model_pct "58.2"; chr6_GL000255v2_alt rmsk exon 2639422 2639772 1094 - . gene_id "ERV316A3_6_GL000255v2_alt(n)"; transcript_id "ERV316A3_6_GL000255v2_alt(n)"; locus "ERV316A3_6_GL000255v2_alt(n)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2977"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "51"; repStart "-52"; chr6_GL000255v2_alt rmsk exon 2639774 2640805 2757 - . gene_id "ERV316A3_6_GL000255v2_alt(n)"; transcript_id "ERV316A3_6_GL000255v2_alt(n)"; locus "ERV316A3_6_GL000255v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2977"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3971"; repStart "-247"; chr6_GL000255v2_alt rmsk exon 2640898 2641023 266 - . gene_id "ERV316A3_6_GL000255v2_alt(n)"; transcript_id "ERV316A3_6_GL000255v2_alt(n)"; locus "ERV316A3_6_GL000255v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2977"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3797"; repStart "-1290"; chr6_GL000255v2_alt rmsk exon 2641047 2642965 3853 - . gene_id "ERV316A3_6_GL000255v2_alt(n)"; transcript_id "ERV316A3_6_GL000255v2_alt(n)"; locus "ERV316A3_6_GL000255v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2977"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "1388"; repStart "-1944"; ### HERVKC4_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 3240663 3247024 . - . gene_id "HERVKC4_6_GL000255v2_alt"; transcript_id "HERVKC4_6_GL000255v2_alt"; locus "HERVKC4_6_GL000255v2_alt"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0029"; model_cov "5261"; model_pct "100.0"; chr6_GL000255v2_alt rmsk exon 3240663 3241212 4163 - . gene_id "HERVKC4_6_GL000255v2_alt"; transcript_id "HERVKC4_6_GL000255v2_alt"; locus "HERVKC4_6_GL000255v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0029"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000255v2_alt rmsk exon 3241213 3246476 42550 - . gene_id "HERVKC4_6_GL000255v2_alt"; transcript_id "HERVKC4_6_GL000255v2_alt"; locus "HERVKC4_6_GL000255v2_alt"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0029"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000255v2_alt rmsk exon 3246477 3247024 5162 - . gene_id "HERVKC4_6_GL000255v2_alt"; transcript_id "HERVKC4_6_GL000255v2_alt"; locus "HERVKC4_6_GL000255v2_alt"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0029"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 3597360 3599497 . + . gene_id "HUERSP2_6_GL000255v2_alt"; transcript_id "HUERSP2_6_GL000255v2_alt"; locus "HUERSP2_6_GL000255v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0138"; model_cov "1234"; model_pct "40.0"; chr6_GL000255v2_alt rmsk exon 3597360 3598334 6277 + . gene_id "HUERSP2_6_GL000255v2_alt"; transcript_id "HUERSP2_6_GL000255v2_alt"; locus "HUERSP2_6_GL000255v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0138"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000255v2_alt rmsk exon 3598411 3598659 1572 + . gene_id "HUERSP2_6_GL000255v2_alt"; transcript_id "HUERSP2_6_GL000255v2_alt"; locus "HUERSP2_6_GL000255v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0138"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000255v2_alt rmsk exon 3598662 3599497 5020 + . gene_id "HUERSP2_6_GL000255v2_alt"; transcript_id "HUERSP2_6_GL000255v2_alt"; locus "HUERSP2_6_GL000255v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0138"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000255v2_alt(a) ### chr6_GL000255v2_alt rmsk gene 3698586 3702689 . - . gene_id "HML6_6_GL000255v2_alt(a)"; transcript_id "HML6_6_GL000255v2_alt(a)"; locus "HML6_6_GL000255v2_alt(a)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0140"; model_cov "3408"; model_pct "47.3"; chr6_GL000255v2_alt rmsk exon 3698586 3700421 23185 - . gene_id "HML6_6_GL000255v2_alt(a)"; transcript_id "HML6_6_GL000255v2_alt(a)"; locus "HML6_6_GL000255v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0140"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000255v2_alt rmsk exon 3700722 3702234 23185 - . gene_id "HML6_6_GL000255v2_alt(a)"; transcript_id "HML6_6_GL000255v2_alt(a)"; locus "HML6_6_GL000255v2_alt(a)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0140"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000255v2_alt rmsk exon 3702269 3702689 2617 - . gene_id "HML6_6_GL000255v2_alt(a)"; transcript_id "HML6_6_GL000255v2_alt(a)"; locus "HML6_6_GL000255v2_alt(a)"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0140"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERV9_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 3736862 3742294 . + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0236"; model_cov "4102"; model_pct "48.6"; chr6_GL000255v2_alt rmsk exon 3736862 3737405 3810 + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0236"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "139"; chr6_GL000255v2_alt rmsk exon 3737453 3738946 11625 + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0236"; repClass "LTR"; repEnd "4562"; repFamily "ERV1"; repLeft "-3874"; repStart "3063"; chr6_GL000255v2_alt rmsk exon 3738953 3740424 11842 + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0236"; repClass "LTR"; repEnd "3209"; repFamily "ERV1"; repLeft "-5227"; repStart "1735"; chr6_GL000255v2_alt rmsk exon 3740413 3741542 9349 + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0236"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "0"; repStart "7307"; chr6_GL000255v2_alt rmsk exon 3741543 3742294 5685 + . gene_id "HERV9_6_GL000255v2_alt"; transcript_id "HERV9_6_GL000255v2_alt"; locus "HERV9_6_GL000255v2_alt"; repName "LTR12"; geneRegion "ltr"; locid "HERV9-int_0236"; repClass "LTR"; repEnd "826"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HML6_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 3756789 3762046 . - . gene_id "HML6_6_GL000255v2_alt(b)"; transcript_id "HML6_6_GL000255v2_alt(b)"; locus "HML6_6_GL000255v2_alt(b)"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0141"; model_cov "4819"; model_pct "66.9"; chr6_GL000255v2_alt rmsk exon 3756789 3757972 7881 - . gene_id "HML6_6_GL000255v2_alt(b)"; transcript_id "HML6_6_GL000255v2_alt(b)"; locus "HML6_6_GL000255v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0141"; repClass "LTR"; repEnd "5113"; repFamily "ERVK"; repLeft "3924"; repStart "-2089"; chr6_GL000255v2_alt rmsk exon 3757973 3761578 25616 - . gene_id "HML6_6_GL000255v2_alt(b)"; transcript_id "HML6_6_GL000255v2_alt(b)"; locus "HML6_6_GL000255v2_alt(b)"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0141"; repClass "LTR"; repEnd "3631"; repFamily "ERVK"; repLeft "1"; repStart "-3571"; chr6_GL000255v2_alt rmsk exon 3761590 3762046 2473 - . gene_id "HML6_6_GL000255v2_alt(b)"; transcript_id "HML6_6_GL000255v2_alt(b)"; locus "HML6_6_GL000255v2_alt(b)"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0141"; repClass "LTR"; repEnd "468"; repFamily "ERVK"; repLeft "1"; repStart "-16"; ### HERVFH19_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 3901232 3903072 . + . gene_id "HERVFH19_6_GL000255v2_alt"; transcript_id "HERVFH19_6_GL000255v2_alt"; locus "HERVFH19_6_GL000255v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0065"; model_cov "1384"; model_pct "17.9"; chr6_GL000255v2_alt rmsk exon 3901232 3902605 10347 + . gene_id "HERVFH19_6_GL000255v2_alt"; transcript_id "HERVFH19_6_GL000255v2_alt"; locus "HERVFH19_6_GL000255v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0065"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6335"; chr6_GL000255v2_alt rmsk exon 3902606 3903072 3421 + . gene_id "HERVFH19_6_GL000255v2_alt"; transcript_id "HERVFH19_6_GL000255v2_alt"; locus "HERVFH19_6_GL000255v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0065"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "-3"; repStart "1"; ### HML5_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 4243517 4250800 . + . gene_id "HML5_6_GL000255v2_alt"; transcript_id "HML5_6_GL000255v2_alt"; locus "HML5_6_GL000255v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0185"; model_cov "6805"; model_pct "99.5"; chr6_GL000255v2_alt rmsk exon 4243517 4243981 2771 + . gene_id "HML5_6_GL000255v2_alt"; transcript_id "HML5_6_GL000255v2_alt"; locus "HML5_6_GL000255v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0185"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000255v2_alt rmsk exon 4243984 4250800 52192 + . gene_id "HML5_6_GL000255v2_alt"; transcript_id "HML5_6_GL000255v2_alt"; locus "HML5_6_GL000255v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0185"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "3"; ### HUERSP3_6_GL000255v2_alt ### chr6_GL000255v2_alt rmsk gene 4312412 4319690 . - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0282"; model_cov "4769"; model_pct "53.5"; chr6_GL000255v2_alt rmsk exon 4312412 4313050 4272 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000255v2_alt rmsk exon 4313051 4313325 1530 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000255v2_alt rmsk exon 4313790 4313901 486 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6_GL000255v2_alt rmsk exon 4313902 4314644 4274 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6_GL000255v2_alt rmsk exon 4314631 4315269 4155 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6_GL000255v2_alt rmsk exon 4315272 4315413 1018 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6_GL000255v2_alt rmsk exon 4315407 4316622 8435 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6_GL000255v2_alt rmsk exon 4317620 4318632 6968 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6_GL000255v2_alt rmsk exon 4318642 4318947 1480 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6_GL000255v2_alt rmsk exon 4318953 4319010 324 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6_GL000255v2_alt rmsk exon 4319056 4319690 4028 - . gene_id "HUERSP3_6_GL000255v2_alt"; transcript_id "HUERSP3_6_GL000255v2_alt"; locus "HUERSP3_6_GL000255v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0282"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_6_GL000255v2_alt(c) ### chr6_GL000255v2_alt rmsk gene 4329842 4333014 . - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0658"; model_cov "1929"; model_pct "32.4"; chr6_GL000255v2_alt rmsk exon 4329842 4330199 12390 - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0658"; repClass "LTR"; repEnd "2295"; repFamily "ERV1"; repLeft "1959"; repStart "-3651"; chr6_GL000255v2_alt rmsk exon 4330488 4331286 12390 - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0658"; repClass "LTR"; repEnd "1958"; repFamily "ERV1"; repLeft "1175"; repStart "-3988"; chr6_GL000255v2_alt rmsk exon 4331593 4332118 12390 - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0658"; repClass "LTR"; repEnd "1174"; repFamily "ERV1"; repLeft "642"; repStart "-4772"; chr6_GL000255v2_alt rmsk exon 4332433 4332560 12390 - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0658"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "522"; repStart "-5305"; chr6_GL000255v2_alt rmsk exon 4332855 4333014 12390 - . gene_id "MER41_6_GL000255v2_alt(c)"; transcript_id "MER41_6_GL000255v2_alt(c)"; locus "MER41_6_GL000255v2_alt(c)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0658"; repClass "LTR"; repEnd "521"; repFamily "ERV1"; repLeft "362"; repStart "-5425"; ### HERVH_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 4540337 4546227 . + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1336"; model_cov "5066"; model_pct "65.7"; chr6_GL000255v2_alt rmsk exon 4540337 4541497 7232 + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1336"; repClass "LTR"; repEnd "2830"; repFamily "ERV1"; repLeft "-4883"; repStart "1688"; chr6_GL000255v2_alt rmsk exon 4541498 4543335 11612 + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1336"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "3357"; chr6_GL000255v2_alt rmsk exon 4543333 4545235 13359 + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1336"; repClass "LTR"; repEnd "7503"; repFamily "ERV1"; repLeft "-210"; repStart "5594"; chr6_GL000255v2_alt rmsk exon 4545625 4545840 1325 + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1336"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7490"; chr6_GL000255v2_alt rmsk exon 4545841 4546227 2589 + . gene_id "HERVH_6_GL000255v2_alt(b)"; transcript_id "HERVH_6_GL000255v2_alt(b)"; locus "HERVH_6_GL000255v2_alt(b)"; repName "LTR7B"; geneRegion "ltr"; locid "HERVH-int_1336"; repClass "LTR"; repEnd "464"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HARLEQUIN_6_GL000255v2_alt(b) ### chr6_GL000255v2_alt rmsk gene 4546308 4549668 . - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; category "internal"; intModel "Harlequin-int"; locid "Harlequin-int_0207"; model_cov "2118"; model_pct "30.7"; chr6_GL000255v2_alt rmsk exon 4546308 4548022 16057 - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0207"; repClass "LTR"; repEnd "4157"; repFamily "ERV1"; repLeft "2448"; repStart "-2739"; chr6_GL000255v2_alt rmsk exon 4548317 4548395 16057 - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0207"; repClass "LTR"; repEnd "2447"; repFamily "ERV1"; repLeft "2382"; repStart "-4449"; chr6_GL000255v2_alt rmsk exon 4548706 4548730 16057 - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0207"; repClass "LTR"; repEnd "2381"; repFamily "ERV1"; repLeft "2359"; repStart "-4515"; chr6_GL000255v2_alt rmsk exon 4549032 4549221 16057 - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0207"; repClass "LTR"; repEnd "2358"; repFamily "ERV1"; repLeft "2171"; repStart "-4538"; chr6_GL000255v2_alt rmsk exon 4549529 4549668 16057 - . gene_id "HARLEQUIN_6_GL000255v2_alt(b)"; transcript_id "HARLEQUIN_6_GL000255v2_alt(b)"; locus "HARLEQUIN_6_GL000255v2_alt(b)"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0207"; repClass "LTR"; repEnd "2170"; repFamily "ERV1"; repLeft "2035"; repStart "-4726"; ### ERVLE_6_GL000256v2_alt(a) ### chr6_GL000256v2_alt rmsk gene 12921 14063 . - . gene_id "ERVLE_6_GL000256v2_alt(a)"; transcript_id "ERVLE_6_GL000256v2_alt(a)"; locus "ERVLE_6_GL000256v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3860"; model_cov "692"; model_pct "12.2"; chr6_GL000256v2_alt rmsk exon 12921 13023 395 - . gene_id "ERVLE_6_GL000256v2_alt(a)"; transcript_id "ERVLE_6_GL000256v2_alt(a)"; locus "ERVLE_6_GL000256v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3860"; repClass "LTR"; repEnd "5489"; repFamily "ERVL"; repLeft "5370"; repStart "-178"; chr6_GL000256v2_alt rmsk exon 13510 14063 1825 - . gene_id "ERVLE_6_GL000256v2_alt(a)"; transcript_id "ERVLE_6_GL000256v2_alt(a)"; locus "ERVLE_6_GL000256v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3860"; repClass "LTR"; repEnd "5306"; repFamily "ERVL"; repLeft "4733"; repStart "-361"; ### HERVS71_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 75543 85878 . - . gene_id "HERVS71_6_GL000256v2_alt"; transcript_id "HERVS71_6_GL000256v2_alt"; locus "HERVS71_6_GL000256v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0071"; model_cov "8932"; model_pct "99.5"; chr6_GL000256v2_alt rmsk exon 75543 76084 3672 - . gene_id "HERVS71_6_GL000256v2_alt"; transcript_id "HERVS71_6_GL000256v2_alt"; locus "HERVS71_6_GL000256v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0071"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; chr6_GL000256v2_alt rmsk exon 76095 83313 60840 - . gene_id "HERVS71_6_GL000256v2_alt"; transcript_id "HERVS71_6_GL000256v2_alt"; locus "HERVS71_6_GL000256v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0071"; repClass "LTR"; repEnd "8937"; repFamily "ERV1"; repLeft "1693"; repStart "-41"; chr6_GL000256v2_alt rmsk exon 83618 85333 60840 - . gene_id "HERVS71_6_GL000256v2_alt"; transcript_id "HERVS71_6_GL000256v2_alt"; locus "HERVS71_6_GL000256v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0071"; repClass "LTR"; repEnd "1692"; repFamily "ERV1"; repLeft "4"; repStart "-7286"; chr6_GL000256v2_alt rmsk exon 85336 85878 3671 - . gene_id "HERVS71_6_GL000256v2_alt"; transcript_id "HERVS71_6_GL000256v2_alt"; locus "HERVS71_6_GL000256v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0071"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "9"; repStart "0"; ### LTR57_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 177520 185270 . - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; category "prototype"; intModel "LTR57-int"; locid "LTR57-int_0215"; model_cov "4258"; model_pct "79.7"; chr6_GL000256v2_alt rmsk exon 177520 177907 2502 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 177908 178568 9045 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "5343"; repFamily "ERVL"; repLeft "4670"; repStart "0"; chr6_GL000256v2_alt rmsk exon 178870 179541 9045 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "4669"; repFamily "ERVL"; repLeft "4009"; repStart "-674"; chr6_GL000256v2_alt rmsk exon 179843 179880 9045 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "4008"; repFamily "ERVL"; repLeft "3971"; repStart "-1335"; chr6_GL000256v2_alt rmsk exon 179869 179986 788 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "3167"; repFamily "ERVL"; repLeft "3050"; repStart "-2176"; chr6_GL000256v2_alt rmsk exon 179978 181108 7506 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "1605"; repStart "-2573"; chr6_GL000256v2_alt rmsk exon 182555 183349 10283 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "1609"; repFamily "ERVL"; repLeft "809"; repStart "-3734"; chr6_GL000256v2_alt rmsk exon 183662 183967 10283 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "808"; repFamily "ERVL"; repLeft "510"; repStart "-4535"; chr6_GL000256v2_alt rmsk exon 184578 185085 10283 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "509"; repFamily "ERVL"; repLeft "1"; repStart "-4834"; chr6_GL000256v2_alt rmsk exon 185086 185270 2524 - . gene_id "LTR57_6_GL000256v2_alt"; transcript_id "LTR57_6_GL000256v2_alt"; locus "LTR57_6_GL000256v2_alt"; repName "LTR57"; geneRegion "ltr"; locid "LTR57-int_0215"; repClass "LTR"; repEnd "411"; repFamily "ERVL"; repLeft "226"; repStart "0"; ### MER41_6_GL000256v2_alt(a) ### chr6_GL000256v2_alt rmsk gene 451841 452625 . - . gene_id "MER41_6_GL000256v2_alt(a)"; transcript_id "MER41_6_GL000256v2_alt(a)"; locus "MER41_6_GL000256v2_alt(a)"; category "internal"; intModel "MER41-int"; locid "MER41-int_0659"; model_cov "786"; model_pct "13.2"; chr6_GL000256v2_alt rmsk exon 451841 452625 5165 - . gene_id "MER41_6_GL000256v2_alt(a)"; transcript_id "MER41_6_GL000256v2_alt(a)"; locus "MER41_6_GL000256v2_alt(a)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0659"; repClass "LTR"; repEnd "5095"; repFamily "ERV1"; repLeft "4309"; repStart "-851"; ### MER41_6_GL000256v2_alt(b) ### chr6_GL000256v2_alt rmsk gene 452631 453868 . + . gene_id "MER41_6_GL000256v2_alt(b)"; transcript_id "MER41_6_GL000256v2_alt(b)"; locus "MER41_6_GL000256v2_alt(b)"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0660"; model_cov "745"; model_pct "12.5"; chr6_GL000256v2_alt rmsk exon 452631 453362 4945 + . gene_id "MER41_6_GL000256v2_alt(b)"; transcript_id "MER41_6_GL000256v2_alt(b)"; locus "MER41_6_GL000256v2_alt(b)"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0660"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5199"; chr6_GL000256v2_alt rmsk exon 453363 453868 2684 + . gene_id "MER41_6_GL000256v2_alt(b)"; transcript_id "MER41_6_GL000256v2_alt(b)"; locus "MER41_6_GL000256v2_alt(b)"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0660"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### ERV316A3_6_GL000256v2_alt(a) ### chr6_GL000256v2_alt rmsk gene 518539 521926 . + . gene_id "ERV316A3_6_GL000256v2_alt(a)"; transcript_id "ERV316A3_6_GL000256v2_alt(a)"; locus "ERV316A3_6_GL000256v2_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2979"; model_cov "2778"; model_pct "53.2"; chr6_GL000256v2_alt rmsk exon 518539 519291 1629 + . gene_id "ERV316A3_6_GL000256v2_alt(a)"; transcript_id "ERV316A3_6_GL000256v2_alt(a)"; locus "ERV316A3_6_GL000256v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2979"; repClass "LTR"; repEnd "2929"; repFamily "ERVL"; repLeft "-2297"; repStart "2167"; chr6_GL000256v2_alt rmsk exon 519311 520953 3476 + . gene_id "ERV316A3_6_GL000256v2_alt(a)"; transcript_id "ERV316A3_6_GL000256v2_alt(a)"; locus "ERV316A3_6_GL000256v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2979"; repClass "LTR"; repEnd "4395"; repFamily "ERVL"; repLeft "-831"; repStart "2688"; chr6_GL000256v2_alt rmsk exon 520973 521245 579 + . gene_id "ERV316A3_6_GL000256v2_alt(a)"; transcript_id "ERV316A3_6_GL000256v2_alt(a)"; locus "ERV316A3_6_GL000256v2_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2979"; repClass "LTR"; repEnd "5176"; repFamily "ERVL"; repLeft "-50"; repStart "4867"; chr6_GL000256v2_alt rmsk exon 521477 521926 1060 + . gene_id "ERV316A3_6_GL000256v2_alt(a)"; transcript_id "ERV316A3_6_GL000256v2_alt(a)"; locus "ERV316A3_6_GL000256v2_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2979"; repClass "LTR"; repEnd "440"; repFamily "ERVL"; repLeft "-11"; repStart "2"; ### HERVH_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 554874 562205 . - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1337"; model_cov "6206"; model_pct "80.5"; chr6_GL000256v2_alt rmsk exon 554874 555312 2416 - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1337"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 555313 556036 4396 - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1337"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6996"; repStart "0"; chr6_GL000256v2_alt rmsk exon 556031 561170 15630 - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1337"; repClass "LTR"; repEnd "5835"; repFamily "ERV1"; repLeft "791"; repStart "-1878"; chr6_GL000256v2_alt rmsk exon 561311 561763 968 - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1337"; repClass "LTR"; repEnd "446"; repFamily "ERV1"; repLeft "1"; repStart "-7267"; chr6_GL000256v2_alt rmsk exon 561764 562205 2256 - . gene_id "HERVH_6_GL000256v2_alt"; transcript_id "HERVH_6_GL000256v2_alt"; locus "HERVH_6_GL000256v2_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1337"; repClass "LTR"; repEnd "450"; repFamily "ERV1"; repLeft "-20"; repStart "0"; ### ERV316A3_6_GL000256v2_alt(b) ### chr6_GL000256v2_alt rmsk gene 713373 714957 . + . gene_id "ERV316A3_6_GL000256v2_alt(b)"; transcript_id "ERV316A3_6_GL000256v2_alt(b)"; locus "ERV316A3_6_GL000256v2_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2980"; model_cov "1658"; model_pct "31.7"; chr6_GL000256v2_alt rmsk exon 713373 714957 3281 + . gene_id "ERV316A3_6_GL000256v2_alt(b)"; transcript_id "ERV316A3_6_GL000256v2_alt(b)"; locus "ERV316A3_6_GL000256v2_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2980"; repClass "LTR"; repEnd "2393"; repFamily "ERVL"; repLeft "-2833"; repStart "735"; ### MER4_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 830869 836412 . - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1020"; model_cov "3131"; model_pct "47.5"; chr6_GL000256v2_alt rmsk exon 830869 832520 8673 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1020"; repClass "LTR"; repEnd "4800"; repFamily "ERV1"; repLeft "3162"; repStart "-1798"; chr6_GL000256v2_alt rmsk exon 832817 833424 8673 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1020"; repClass "LTR"; repEnd "3153"; repFamily "ERV1"; repLeft "2735"; repStart "-3445"; chr6_GL000256v2_alt rmsk exon 833412 833488 1609 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1020"; repClass "LTR"; repEnd "1114"; repFamily "ERV1"; repLeft "1038"; repStart "-5484"; chr6_GL000256v2_alt rmsk exon 834012 834856 2053 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1020"; repClass "LTR"; repEnd "1037"; repFamily "ERV1"; repLeft "121"; repStart "-5561"; chr6_GL000256v2_alt rmsk exon 835908 835989 484 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1020"; repClass "LTR"; repEnd "84"; repFamily "ERV1"; repLeft "1"; repStart "-6514"; chr6_GL000256v2_alt rmsk exon 835993 836412 2457 - . gene_id "MER4_6_GL000256v2_alt"; transcript_id "MER4_6_GL000256v2_alt"; locus "MER4_6_GL000256v2_alt"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1020"; repClass "LTR"; repEnd "465"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL40_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 992712 993509 . + . gene_id "HERVL40_6_GL000256v2_alt"; transcript_id "HERVL40_6_GL000256v2_alt"; locus "HERVL40_6_GL000256v2_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0501"; model_cov "809"; model_pct "14.6"; chr6_GL000256v2_alt rmsk exon 992712 993509 1715 + . gene_id "HERVL40_6_GL000256v2_alt"; transcript_id "HERVL40_6_GL000256v2_alt"; locus "HERVL40_6_GL000256v2_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0501"; repClass "LTR"; repEnd "1224"; repFamily "ERVL"; repLeft "-4306"; repStart "415"; ### ERV316A3_6_GL000256v2_alt(c) ### chr6_GL000256v2_alt rmsk gene 1019904 1024065 . + . gene_id "ERV316A3_6_GL000256v2_alt(c)"; transcript_id "ERV316A3_6_GL000256v2_alt(c)"; locus "ERV316A3_6_GL000256v2_alt(c)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2981"; model_cov "3757"; model_pct "71.9"; chr6_GL000256v2_alt rmsk exon 1019904 1019998 363 + . gene_id "ERV316A3_6_GL000256v2_alt(c)"; transcript_id "ERV316A3_6_GL000256v2_alt(c)"; locus "ERV316A3_6_GL000256v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2981"; repClass "LTR"; repEnd "690"; repFamily "ERVL"; repLeft "-4536"; repStart "589"; chr6_GL000256v2_alt rmsk exon 1020023 1022471 5527 + . gene_id "ERV316A3_6_GL000256v2_alt(c)"; transcript_id "ERV316A3_6_GL000256v2_alt(c)"; locus "ERV316A3_6_GL000256v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2981"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-1944"; repStart "832"; chr6_GL000256v2_alt rmsk exon 1022468 1023683 3639 + . gene_id "ERV316A3_6_GL000256v2_alt(c)"; transcript_id "ERV316A3_6_GL000256v2_alt(c)"; locus "ERV316A3_6_GL000256v2_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2981"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3776"; chr6_GL000256v2_alt rmsk exon 1023687 1024065 1113 + . gene_id "ERV316A3_6_GL000256v2_alt(c)"; transcript_id "ERV316A3_6_GL000256v2_alt(c)"; locus "ERV316A3_6_GL000256v2_alt(c)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2981"; repClass "LTR"; repEnd "460"; repFamily "ERVL"; repLeft "-2"; repStart "57"; ### ERV316A3_6_GL000256v2_alt(d) ### chr6_GL000256v2_alt rmsk gene 1073971 1079116 . + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2982"; model_cov "4121"; model_pct "78.9"; chr6_GL000256v2_alt rmsk exon 1073971 1074380 1299 + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2982"; repClass "LTR"; repEnd "435"; repFamily "ERVL"; repLeft "-27"; repStart "1"; chr6_GL000256v2_alt rmsk exon 1074655 1075085 1020 + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2982"; repClass "LTR"; repEnd "709"; repFamily "ERVL"; repLeft "-4517"; repStart "233"; chr6_GL000256v2_alt rmsk exon 1075090 1077536 5194 + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2982"; repClass "LTR"; repEnd "3270"; repFamily "ERVL"; repLeft "-1956"; repStart "832"; chr6_GL000256v2_alt rmsk exon 1077543 1078742 3415 + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2982"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000256v2_alt rmsk exon 1078745 1079116 1216 + . gene_id "ERV316A3_6_GL000256v2_alt(d)"; transcript_id "ERV316A3_6_GL000256v2_alt(d)"; locus "ERV316A3_6_GL000256v2_alt(d)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2982"; repClass "LTR"; repEnd "436"; repFamily "ERVL"; repLeft "-26"; repStart "56"; ### ERV316A3_6_GL000256v2_alt(e) ### chr6_GL000256v2_alt rmsk gene 1099279 1100502 . + . gene_id "ERV316A3_6_GL000256v2_alt(e)"; transcript_id "ERV316A3_6_GL000256v2_alt(e)"; locus "ERV316A3_6_GL000256v2_alt(e)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2983"; model_cov "862"; model_pct "16.5"; chr6_GL000256v2_alt rmsk exon 1099279 1100117 2001 + . gene_id "ERV316A3_6_GL000256v2_alt(e)"; transcript_id "ERV316A3_6_GL000256v2_alt(e)"; locus "ERV316A3_6_GL000256v2_alt(e)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2983"; repClass "LTR"; repEnd "4993"; repFamily "ERVL"; repLeft "-233"; repStart "4131"; chr6_GL000256v2_alt rmsk exon 1100121 1100502 1339 + . gene_id "ERV316A3_6_GL000256v2_alt(e)"; transcript_id "ERV316A3_6_GL000256v2_alt(e)"; locus "ERV316A3_6_GL000256v2_alt(e)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2983"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### ERV316A3_6_GL000256v2_alt(f) ### chr6_GL000256v2_alt rmsk gene 1121992 1124731 . + . gene_id "ERV316A3_6_GL000256v2_alt(f)"; transcript_id "ERV316A3_6_GL000256v2_alt(f)"; locus "ERV316A3_6_GL000256v2_alt(f)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2984"; model_cov "2330"; model_pct "44.6"; chr6_GL000256v2_alt rmsk exon 1121992 1123125 2794 + . gene_id "ERV316A3_6_GL000256v2_alt(f)"; transcript_id "ERV316A3_6_GL000256v2_alt(f)"; locus "ERV316A3_6_GL000256v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2984"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2154"; chr6_GL000256v2_alt rmsk exon 1123126 1124335 3059 + . gene_id "ERV316A3_6_GL000256v2_alt(f)"; transcript_id "ERV316A3_6_GL000256v2_alt(f)"; locus "ERV316A3_6_GL000256v2_alt(f)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2984"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "3775"; chr6_GL000256v2_alt rmsk exon 1124339 1124731 1261 + . gene_id "ERV316A3_6_GL000256v2_alt(f)"; transcript_id "ERV316A3_6_GL000256v2_alt(f)"; locus "ERV316A3_6_GL000256v2_alt(f)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2984"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000256v2_alt(g) ### chr6_GL000256v2_alt rmsk gene 1174127 1179599 . + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2985"; model_cov "4234"; model_pct "81.0"; chr6_GL000256v2_alt rmsk exon 1174127 1174564 1274 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000256v2_alt rmsk exon 1174567 1175139 390 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "826"; repFamily "ERVL"; repLeft "-4400"; repStart "233"; chr6_GL000256v2_alt rmsk exon 1175246 1177100 5385 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "2666"; repFamily "ERVL"; repLeft "-2560"; repStart "832"; chr6_GL000256v2_alt rmsk exon 1177394 1178000 5385 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "2667"; chr6_GL000256v2_alt rmsk exon 1178001 1179201 3396 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000256v2_alt rmsk exon 1179212 1179599 1137 + . gene_id "ERV316A3_6_GL000256v2_alt(g)"; transcript_id "ERV316A3_6_GL000256v2_alt(g)"; locus "ERV316A3_6_GL000256v2_alt(g)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2985"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "57"; ### ERV316A3_6_GL000256v2_alt(h) ### chr6_GL000256v2_alt rmsk gene 1191943 1193372 . + . gene_id "ERV316A3_6_GL000256v2_alt(h)"; transcript_id "ERV316A3_6_GL000256v2_alt(h)"; locus "ERV316A3_6_GL000256v2_alt(h)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2986"; model_cov "1435"; model_pct "27.5"; chr6_GL000256v2_alt rmsk exon 1191943 1192214 360 + . gene_id "ERV316A3_6_GL000256v2_alt(h)"; transcript_id "ERV316A3_6_GL000256v2_alt(h)"; locus "ERV316A3_6_GL000256v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2986"; repClass "LTR"; repEnd "1271"; repFamily "ERVL"; repLeft "-3955"; repStart "995"; chr6_GL000256v2_alt rmsk exon 1192213 1193372 2894 + . gene_id "ERV316A3_6_GL000256v2_alt(h)"; transcript_id "ERV316A3_6_GL000256v2_alt(h)"; locus "ERV316A3_6_GL000256v2_alt(h)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2986"; repClass "LTR"; repEnd "3027"; repFamily "ERVL"; repLeft "-2199"; repStart "1868"; ### ERV316A3_6_GL000256v2_alt(i) ### chr6_GL000256v2_alt rmsk gene 1212476 1217946 . + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2987"; model_cov "3998"; model_pct "76.5"; chr6_GL000256v2_alt rmsk exon 1212476 1212918 1197 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000256v2_alt rmsk exon 1213156 1213493 769 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "572"; repFamily "ERVL"; repLeft "-4654"; repStart "217"; chr6_GL000256v2_alt rmsk exon 1213603 1216076 5223 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "832"; chr6_GL000256v2_alt rmsk exon 1216077 1216646 1394 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-850"; repStart "3775"; chr6_GL000256v2_alt rmsk exon 1216939 1217558 1528 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "4990"; repFamily "ERVL"; repLeft "-236"; repStart "4393"; chr6_GL000256v2_alt rmsk exon 1217565 1217946 1278 + . gene_id "ERV316A3_6_GL000256v2_alt(i)"; transcript_id "ERV316A3_6_GL000256v2_alt(i)"; locus "ERV316A3_6_GL000256v2_alt(i)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2987"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-5"; repStart "69"; ### ERV316A3_6_GL000256v2_alt(j) ### chr6_GL000256v2_alt rmsk gene 1244750 1248212 . + . gene_id "ERV316A3_6_GL000256v2_alt(j)"; transcript_id "ERV316A3_6_GL000256v2_alt(j)"; locus "ERV316A3_6_GL000256v2_alt(j)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2990"; model_cov "3062"; model_pct "58.6"; chr6_GL000256v2_alt rmsk exon 1244750 1246577 3683 + . gene_id "ERV316A3_6_GL000256v2_alt(j)"; transcript_id "ERV316A3_6_GL000256v2_alt(j)"; locus "ERV316A3_6_GL000256v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2990"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "-1949"; repStart "1413"; chr6_GL000256v2_alt rmsk exon 1246586 1247361 2003 + . gene_id "ERV316A3_6_GL000256v2_alt(j)"; transcript_id "ERV316A3_6_GL000256v2_alt(j)"; locus "ERV316A3_6_GL000256v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2990"; repClass "LTR"; repEnd "4575"; repFamily "ERVL"; repLeft "-651"; repStart "3783"; chr6_GL000256v2_alt rmsk exon 1247397 1247816 2003 + . gene_id "ERV316A3_6_GL000256v2_alt(j)"; transcript_id "ERV316A3_6_GL000256v2_alt(j)"; locus "ERV316A3_6_GL000256v2_alt(j)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2990"; repClass "LTR"; repEnd "4982"; repFamily "ERVL"; repLeft "-244"; repStart "4576"; chr6_GL000256v2_alt rmsk exon 1247831 1248212 1258 + . gene_id "ERV316A3_6_GL000256v2_alt(j)"; transcript_id "ERV316A3_6_GL000256v2_alt(j)"; locus "ERV316A3_6_GL000256v2_alt(j)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2990"; repClass "LTR"; repEnd "458"; repFamily "ERVL"; repLeft "-4"; repStart "69"; ### HERVP71A_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 1260299 1268161 . + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0095"; model_cov "3805"; model_pct "50.1"; chr6_GL000256v2_alt rmsk exon 1260299 1260741 2827 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "1030"; repFamily "ERV1"; repLeft "-6560"; repStart "591"; chr6_GL000256v2_alt rmsk exon 1262069 1262717 3911 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "1759"; repFamily "ERV1"; repLeft "-5831"; repStart "1116"; chr6_GL000256v2_alt rmsk exon 1264198 1264924 5100 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "4492"; repFamily "ERV1"; repLeft "-3098"; repStart "3758"; chr6_GL000256v2_alt rmsk exon 1265222 1265349 5100 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "4618"; repFamily "ERV1"; repLeft "-2972"; repStart "4493"; chr6_GL000256v2_alt rmsk exon 1265366 1265574 1319 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "5463"; repFamily "ERV1"; repLeft "-2127"; repStart "5243"; chr6_GL000256v2_alt rmsk exon 1265728 1266630 4754 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "6853"; repFamily "ERV1"; repLeft "-737"; repStart "5938"; chr6_GL000256v2_alt rmsk exon 1266825 1267558 3958 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "7588"; repFamily "ERV1"; repLeft "-2"; repStart "6859"; chr6_GL000256v2_alt rmsk exon 1267799 1268161 1969 + . gene_id "HERVP71A_6_GL000256v2_alt"; transcript_id "HERVP71A_6_GL000256v2_alt"; locus "HERVP71A_6_GL000256v2_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0095"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "0"; repStart "254"; ### ERV316A3_6_GL000256v2_alt(k) ### chr6_GL000256v2_alt rmsk gene 1295757 1301093 . + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2991"; model_cov "4034"; model_pct "77.2"; chr6_GL000256v2_alt rmsk exon 1295757 1296200 1359 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000256v2_alt rmsk exon 1296439 1296559 396 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "343"; repFamily "ERVL"; repLeft "-4883"; repStart "219"; chr6_GL000256v2_alt rmsk exon 1296577 1296826 402 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "649"; repFamily "ERVL"; repLeft "-4577"; repStart "372"; chr6_GL000256v2_alt rmsk exon 1296892 1298476 5179 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "2411"; repFamily "ERVL"; repLeft "-2815"; repStart "838"; chr6_GL000256v2_alt rmsk exon 1298791 1299662 5179 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "3276"; repFamily "ERVL"; repLeft "-1950"; repStart "2413"; chr6_GL000256v2_alt rmsk exon 1299663 1300866 3037 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "4972"; repFamily "ERVL"; repLeft "-254"; repStart "3775"; chr6_GL000256v2_alt rmsk exon 1300880 1301093 758 + . gene_id "ERV316A3_6_GL000256v2_alt(k)"; transcript_id "ERV316A3_6_GL000256v2_alt(k)"; locus "ERV316A3_6_GL000256v2_alt(k)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2991"; repClass "LTR"; repEnd "271"; repFamily "ERVL"; repLeft "-191"; repStart "39"; ### ERV316A3_6_GL000256v2_alt(l) ### chr6_GL000256v2_alt rmsk gene 1574521 1575935 . + . gene_id "ERV316A3_6_GL000256v2_alt(l)"; transcript_id "ERV316A3_6_GL000256v2_alt(l)"; locus "ERV316A3_6_GL000256v2_alt(l)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2992"; model_cov "1396"; model_pct "26.7"; chr6_GL000256v2_alt rmsk exon 1574521 1575935 2387 + . gene_id "ERV316A3_6_GL000256v2_alt(l)"; transcript_id "ERV316A3_6_GL000256v2_alt(l)"; locus "ERV316A3_6_GL000256v2_alt(l)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2992"; repClass "LTR"; repEnd "2455"; repFamily "ERVL"; repLeft "-2771"; repStart "1059"; ### ERVLE_6_GL000256v2_alt(b) ### chr6_GL000256v2_alt rmsk gene 1678378 1679002 . - . gene_id "ERVLE_6_GL000256v2_alt(b)"; transcript_id "ERVLE_6_GL000256v2_alt(b)"; locus "ERVLE_6_GL000256v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3862"; model_cov "653"; model_pct "11.5"; chr6_GL000256v2_alt rmsk exon 1678378 1679002 1289 - . gene_id "ERVLE_6_GL000256v2_alt(b)"; transcript_id "ERVLE_6_GL000256v2_alt(b)"; locus "ERVLE_6_GL000256v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3862"; repClass "LTR"; repEnd "3869"; repFamily "ERVL"; repLeft "3216"; repStart "-1798"; ### ERVLE_6_GL000256v2_alt(c) ### chr6_GL000256v2_alt rmsk gene 2337702 2341753 . - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3864"; model_cov "2673"; model_pct "47.2"; chr6_GL000256v2_alt rmsk exon 2337702 2338787 3772 - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3864"; repClass "LTR"; repEnd "4430"; repFamily "ERVL"; repLeft "3299"; repStart "-1237"; chr6_GL000256v2_alt rmsk exon 2338832 2338978 403 - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3864"; repClass "LTR"; repEnd "3209"; repFamily "ERVL"; repLeft "3059"; repStart "-2458"; chr6_GL000256v2_alt rmsk exon 2339439 2340224 1471 - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3864"; repClass "LTR"; repEnd "1889"; repFamily "ERVL"; repLeft "946"; repStart "-3778"; chr6_GL000256v2_alt rmsk exon 2340524 2340561 1074 - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3864"; repClass "LTR"; repEnd "789"; repFamily "ERVL"; repLeft "756"; repStart "-4878"; chr6_GL000256v2_alt rmsk exon 2341349 2341753 1074 - . gene_id "ERVLE_6_GL000256v2_alt(c)"; transcript_id "ERVLE_6_GL000256v2_alt(c)"; locus "ERVLE_6_GL000256v2_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3864"; repClass "LTR"; repEnd "755"; repFamily "ERVL"; repLeft "339"; repStart "-4912"; ### HARLEQUIN_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 2485292 2490196 . - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0208"; model_cov "4527"; model_pct "65.6"; chr6_GL000256v2_alt rmsk exon 2485292 2485864 3734 - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0208"; repClass "LTR"; repEnd "6474"; repFamily "ERV1"; repLeft "5886"; repStart "-422"; chr6_GL000256v2_alt rmsk exon 2485859 2487875 14763 - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0208"; repClass "LTR"; repEnd "5387"; repFamily "ERV1"; repLeft "3352"; repStart "-1509"; chr6_GL000256v2_alt rmsk exon 2487875 2488848 6515 - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0208"; repClass "LTR"; repEnd "2574"; repFamily "ERV1"; repLeft "1572"; repStart "-4322"; chr6_GL000256v2_alt rmsk exon 2488834 2489717 6244 - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0208"; repClass "LTR"; repEnd "903"; repFamily "ERV1"; repLeft "1"; repStart "-5993"; chr6_GL000256v2_alt rmsk exon 2489718 2490196 4052 - . gene_id "HARLEQUIN_6_GL000256v2_alt"; transcript_id "HARLEQUIN_6_GL000256v2_alt"; locus "HARLEQUIN_6_GL000256v2_alt"; repName "LTR2B"; geneRegion "ltr"; locid "Harlequin-int_0208"; repClass "LTR"; repEnd "483"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERV3_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 2529184 2531893 . - . gene_id "HERV3_6_GL000256v2_alt"; transcript_id "HERV3_6_GL000256v2_alt"; locus "HERV3_6_GL000256v2_alt"; category "oneside"; intModel "HERV3-int"; locid "HERV3-int_0110"; model_cov "1870"; model_pct "22.2"; chr6_GL000256v2_alt rmsk exon 2529184 2530028 8774 - . gene_id "HERV3_6_GL000256v2_alt"; transcript_id "HERV3_6_GL000256v2_alt"; locus "HERV3_6_GL000256v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0110"; repClass "LTR"; repEnd "7340"; repFamily "ERV1"; repLeft "6492"; repStart "-1086"; chr6_GL000256v2_alt rmsk exon 2530335 2531314 8774 - . gene_id "HERV3_6_GL000256v2_alt"; transcript_id "HERV3_6_GL000256v2_alt"; locus "HERV3_6_GL000256v2_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0110"; repClass "LTR"; repEnd "6491"; repFamily "ERV1"; repLeft "5469"; repStart "-1935"; chr6_GL000256v2_alt rmsk exon 2531316 2531436 850 - . gene_id "HERV3_6_GL000256v2_alt"; transcript_id "HERV3_6_GL000256v2_alt"; locus "HERV3_6_GL000256v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0110"; repClass "LTR"; repEnd "235"; repFamily "ERV1"; repLeft "125"; repStart "-324"; chr6_GL000256v2_alt rmsk exon 2531726 2531893 850 - . gene_id "HERV3_6_GL000256v2_alt"; transcript_id "HERV3_6_GL000256v2_alt"; locus "HERV3_6_GL000256v2_alt"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0110"; repClass "LTR"; repEnd "124"; repFamily "ERV1"; repLeft "1"; repStart "-435"; ### HML3_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 2535420 2539537 . - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0283"; model_cov "3520"; model_pct "58.5"; chr6_GL000256v2_alt rmsk exon 2535420 2535533 879 - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0283"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "398"; repStart "0"; chr6_GL000256v2_alt rmsk exon 2535536 2536054 3975 - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0283"; repClass "LTR"; repEnd "5105"; repFamily "ERVK"; repLeft "4601"; repStart "-916"; chr6_GL000256v2_alt rmsk exon 2536042 2536271 1782 - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0283"; repClass "LTR"; repEnd "3953"; repFamily "ERVK"; repLeft "3723"; repStart "-2068"; chr6_GL000256v2_alt rmsk exon 2536273 2539011 21401 - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0283"; repClass "LTR"; repEnd "2797"; repFamily "ERVK"; repLeft "11"; repStart "-3224"; chr6_GL000256v2_alt rmsk exon 2539024 2539537 4267 - . gene_id "HML3_6_GL000256v2_alt"; transcript_id "HML3_6_GL000256v2_alt"; locus "HML3_6_GL000256v2_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0283"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### ERVLB4_6_GL000256v2_alt(a) ### chr6_GL000256v2_alt rmsk gene 2546968 2548504 . - . gene_id "ERVLB4_6_GL000256v2_alt(a)"; transcript_id "ERVLB4_6_GL000256v2_alt(a)"; locus "ERVLB4_6_GL000256v2_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1995"; model_cov "867"; model_pct "15.2"; chr6_GL000256v2_alt rmsk exon 2546968 2547300 1387 - . gene_id "ERVLB4_6_GL000256v2_alt(a)"; transcript_id "ERVLB4_6_GL000256v2_alt(a)"; locus "ERVLB4_6_GL000256v2_alt(a)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_1995"; repClass "LTR"; repEnd "348"; repFamily "ERVL"; repLeft "2"; repStart "-116"; chr6_GL000256v2_alt rmsk exon 2547304 2547735 3836 - . gene_id "ERVLB4_6_GL000256v2_alt(a)"; transcript_id "ERVLB4_6_GL000256v2_alt(a)"; locus "ERVLB4_6_GL000256v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1995"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5294"; repStart "0"; chr6_GL000256v2_alt rmsk exon 2548058 2548504 3836 - . gene_id "ERVLB4_6_GL000256v2_alt(a)"; transcript_id "ERVLB4_6_GL000256v2_alt(a)"; locus "ERVLB4_6_GL000256v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1995"; repClass "LTR"; repEnd "5293"; repFamily "ERVL"; repLeft "4846"; repStart "-421"; ### ERV316A3_6_GL000256v2_alt(m) ### chr6_GL000256v2_alt rmsk gene 2602731 2604173 . + . gene_id "ERV316A3_6_GL000256v2_alt(m)"; transcript_id "ERV316A3_6_GL000256v2_alt(m)"; locus "ERV316A3_6_GL000256v2_alt(m)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2993"; model_cov "1471"; model_pct "28.1"; chr6_GL000256v2_alt rmsk exon 2602731 2604173 2940 + . gene_id "ERV316A3_6_GL000256v2_alt(m)"; transcript_id "ERV316A3_6_GL000256v2_alt(m)"; locus "ERV316A3_6_GL000256v2_alt(m)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2993"; repClass "LTR"; repEnd "4785"; repFamily "ERVL"; repLeft "-441"; repStart "3314"; ### ERVLB4_6_GL000256v2_alt(b) ### chr6_GL000256v2_alt rmsk gene 2622637 2624143 . - . gene_id "ERVLB4_6_GL000256v2_alt(b)"; transcript_id "ERVLB4_6_GL000256v2_alt(b)"; locus "ERVLB4_6_GL000256v2_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1996"; model_cov "833"; model_pct "14.6"; chr6_GL000256v2_alt rmsk exon 2622637 2622974 1283 - . gene_id "ERVLB4_6_GL000256v2_alt(b)"; transcript_id "ERVLB4_6_GL000256v2_alt(b)"; locus "ERVLB4_6_GL000256v2_alt(b)"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_1996"; repClass "LTR"; repEnd "281"; repFamily "ERVL"; repLeft "-66"; repStart "-116"; chr6_GL000256v2_alt rmsk exon 2622982 2623378 3249 - . gene_id "ERVLB4_6_GL000256v2_alt(b)"; transcript_id "ERVLB4_6_GL000256v2_alt(b)"; locus "ERVLB4_6_GL000256v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1996"; repClass "LTR"; repEnd "5705"; repFamily "ERVL"; repLeft "5295"; repStart "-9"; chr6_GL000256v2_alt rmsk exon 2623713 2624143 3249 - . gene_id "ERVLB4_6_GL000256v2_alt(b)"; transcript_id "ERVLB4_6_GL000256v2_alt(b)"; locus "ERVLB4_6_GL000256v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1996"; repClass "LTR"; repEnd "5294"; repFamily "ERVL"; repLeft "4871"; repStart "-420"; ### ERVLB4_6_GL000256v2_alt(c) ### chr6_GL000256v2_alt rmsk gene 2678553 2679341 . - . gene_id "ERVLB4_6_GL000256v2_alt(c)"; transcript_id "ERVLB4_6_GL000256v2_alt(c)"; locus "ERVLB4_6_GL000256v2_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_1998"; model_cov "809"; model_pct "14.2"; chr6_GL000256v2_alt rmsk exon 2678553 2679341 2609 - . gene_id "ERVLB4_6_GL000256v2_alt(c)"; transcript_id "ERVLB4_6_GL000256v2_alt(c)"; locus "ERVLB4_6_GL000256v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_1998"; repClass "LTR"; repEnd "884"; repFamily "ERVL"; repLeft "75"; repStart "-4830"; ### ERV316A3_6_GL000256v2_alt(n) ### chr6_GL000256v2_alt rmsk gene 2686010 2689547 . - . gene_id "ERV316A3_6_GL000256v2_alt(n)"; transcript_id "ERV316A3_6_GL000256v2_alt(n)"; locus "ERV316A3_6_GL000256v2_alt(n)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2994"; model_cov "3041"; model_pct "58.2"; chr6_GL000256v2_alt rmsk exon 2686010 2686356 1037 - . gene_id "ERV316A3_6_GL000256v2_alt(n)"; transcript_id "ERV316A3_6_GL000256v2_alt(n)"; locus "ERV316A3_6_GL000256v2_alt(n)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2994"; repClass "LTR"; repEnd "406"; repFamily "ERVL"; repLeft "51"; repStart "-56"; chr6_GL000256v2_alt rmsk exon 2686358 2687387 2730 - . gene_id "ERV316A3_6_GL000256v2_alt(n)"; transcript_id "ERV316A3_6_GL000256v2_alt(n)"; locus "ERV316A3_6_GL000256v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2994"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3971"; repStart "-247"; chr6_GL000256v2_alt rmsk exon 2687480 2687605 266 - . gene_id "ERV316A3_6_GL000256v2_alt(n)"; transcript_id "ERV316A3_6_GL000256v2_alt(n)"; locus "ERV316A3_6_GL000256v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2994"; repClass "LTR"; repEnd "3936"; repFamily "ERVL"; repLeft "3797"; repStart "-1290"; chr6_GL000256v2_alt rmsk exon 2687629 2689547 3845 - . gene_id "ERV316A3_6_GL000256v2_alt(n)"; transcript_id "ERV316A3_6_GL000256v2_alt(n)"; locus "ERV316A3_6_GL000256v2_alt(n)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2994"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "1388"; repStart "-1944"; ### HERVL_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 2732107 2738223 . + . gene_id "HERVL_6_GL000256v2_alt"; transcript_id "HERVL_6_GL000256v2_alt"; locus "HERVL_6_GL000256v2_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1475"; model_cov "5653"; model_pct "100.0"; chr6_GL000256v2_alt rmsk exon 2732107 2737769 44148 + . gene_id "HERVL_6_GL000256v2_alt"; transcript_id "HERVL_6_GL000256v2_alt"; locus "HERVL_6_GL000256v2_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1475"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_GL000256v2_alt rmsk exon 2737770 2738223 3011 + . gene_id "HERVL_6_GL000256v2_alt"; transcript_id "HERVL_6_GL000256v2_alt"; locus "HERVL_6_GL000256v2_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1475"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### ERV316A3_6_GL000256v2_alt(o) ### chr6_GL000256v2_alt rmsk gene 2762669 2768837 . - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2995"; model_cov "4366"; model_pct "83.5"; chr6_GL000256v2_alt rmsk exon 2762669 2762964 805 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "352"; repFamily "ERVL"; repLeft "50"; repStart "-110"; chr6_GL000256v2_alt rmsk exon 2762965 2764182 3774 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "4979"; repFamily "ERVL"; repLeft "3776"; repStart "-247"; chr6_GL000256v2_alt rmsk exon 2764180 2765033 1952 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "2991"; repFamily "ERVL"; repLeft "1964"; repStart "-2235"; chr6_GL000256v2_alt rmsk exon 2765486 2766955 3765 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "2410"; repFamily "ERVL"; repLeft "988"; repStart "-2816"; chr6_GL000256v2_alt rmsk exon 2767299 2767449 3765 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "987"; repFamily "ERVL"; repLeft "832"; repStart "-4239"; chr6_GL000256v2_alt rmsk exon 2767566 2768127 784 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "564"; repFamily "ERVL"; repLeft "5"; repStart "-4662"; chr6_GL000256v2_alt rmsk exon 2768128 2768288 1039 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "323"; repStart "0"; chr6_GL000256v2_alt rmsk exon 2768528 2768837 1039 - . gene_id "ERV316A3_6_GL000256v2_alt(o)"; transcript_id "ERV316A3_6_GL000256v2_alt(o)"; locus "ERV316A3_6_GL000256v2_alt(o)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2995"; repClass "LTR"; repEnd "322"; repFamily "ERVL"; repLeft "1"; repStart "-140"; ### HERVKC4_6_GL000256v2_alt(a) ### chr6_GL000256v2_alt rmsk gene 3285881 3292241 . - . gene_id "HERVKC4_6_GL000256v2_alt(a)"; transcript_id "HERVKC4_6_GL000256v2_alt(a)"; locus "HERVKC4_6_GL000256v2_alt(a)"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0030"; model_cov "5261"; model_pct "100.0"; chr6_GL000256v2_alt rmsk exon 3285881 3286430 4163 - . gene_id "HERVKC4_6_GL000256v2_alt(a)"; transcript_id "HERVKC4_6_GL000256v2_alt(a)"; locus "HERVKC4_6_GL000256v2_alt(a)"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0030"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 3286431 3291693 42591 - . gene_id "HERVKC4_6_GL000256v2_alt(a)"; transcript_id "HERVKC4_6_GL000256v2_alt(a)"; locus "HERVKC4_6_GL000256v2_alt(a)"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0030"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 3291694 3292241 5162 - . gene_id "HERVKC4_6_GL000256v2_alt(a)"; transcript_id "HERVKC4_6_GL000256v2_alt(a)"; locus "HERVKC4_6_GL000256v2_alt(a)"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0030"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVKC4_6_GL000256v2_alt(b) ### chr6_GL000256v2_alt rmsk gene 3318619 3324979 . - . gene_id "HERVKC4_6_GL000256v2_alt(b)"; transcript_id "HERVKC4_6_GL000256v2_alt(b)"; locus "HERVKC4_6_GL000256v2_alt(b)"; category "prototype"; intModel "HERVKC4-int"; locid "HERVKC4-int_0031"; model_cov "5261"; model_pct "100.0"; chr6_GL000256v2_alt rmsk exon 3318619 3319168 4163 - . gene_id "HERVKC4_6_GL000256v2_alt(b)"; transcript_id "HERVKC4_6_GL000256v2_alt(b)"; locus "HERVKC4_6_GL000256v2_alt(b)"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0031"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 3319169 3324431 42591 - . gene_id "HERVKC4_6_GL000256v2_alt(b)"; transcript_id "HERVKC4_6_GL000256v2_alt(b)"; locus "HERVKC4_6_GL000256v2_alt(b)"; repName "HERVKC4-int"; geneRegion "internal"; locid "HERVKC4-int_0031"; repClass "LTR"; repEnd "5262"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 3324432 3324979 5162 - . gene_id "HERVKC4_6_GL000256v2_alt(b)"; transcript_id "HERVKC4_6_GL000256v2_alt(b)"; locus "HERVKC4_6_GL000256v2_alt(b)"; repName "LTR14"; geneRegion "ltr"; locid "HERVKC4-int_0031"; repClass "LTR"; repEnd "548"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP2_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 3690260 3692397 . + . gene_id "HUERSP2_6_GL000256v2_alt"; transcript_id "HUERSP2_6_GL000256v2_alt"; locus "HUERSP2_6_GL000256v2_alt"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0139"; model_cov "1234"; model_pct "40.0"; chr6_GL000256v2_alt rmsk exon 3690260 3691234 6336 + . gene_id "HUERSP2_6_GL000256v2_alt"; transcript_id "HUERSP2_6_GL000256v2_alt"; locus "HUERSP2_6_GL000256v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0139"; repClass "LTR"; repEnd "2831"; repFamily "ERV1"; repLeft "-257"; repStart "1850"; chr6_GL000256v2_alt rmsk exon 3691311 3691559 1529 + . gene_id "HUERSP2_6_GL000256v2_alt"; transcript_id "HUERSP2_6_GL000256v2_alt"; locus "HUERSP2_6_GL000256v2_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0139"; repClass "LTR"; repEnd "3086"; repFamily "ERV1"; repLeft "-2"; repStart "2833"; chr6_GL000256v2_alt rmsk exon 3691562 3692397 5007 + . gene_id "HUERSP2_6_GL000256v2_alt"; transcript_id "HUERSP2_6_GL000256v2_alt"; locus "HUERSP2_6_GL000256v2_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0139"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "0"; repStart "44"; ### HML6_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 3790756 3794858 . - . gene_id "HML6_6_GL000256v2_alt"; transcript_id "HML6_6_GL000256v2_alt"; locus "HML6_6_GL000256v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0142"; model_cov "3408"; model_pct "47.3"; chr6_GL000256v2_alt rmsk exon 3790756 3792596 23130 - . gene_id "HML6_6_GL000256v2_alt"; transcript_id "HML6_6_GL000256v2_alt"; locus "HML6_6_GL000256v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0142"; repClass "LTR"; repEnd "3410"; repFamily "ERVK"; repLeft "1527"; repStart "-3792"; chr6_GL000256v2_alt rmsk exon 3792894 3794403 23130 - . gene_id "HML6_6_GL000256v2_alt"; transcript_id "HML6_6_GL000256v2_alt"; locus "HML6_6_GL000256v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0142"; repClass "LTR"; repEnd "1526"; repFamily "ERVK"; repLeft "1"; repStart "-5676"; chr6_GL000256v2_alt rmsk exon 3794438 3794858 2468 - . gene_id "HML6_6_GL000256v2_alt"; transcript_id "HML6_6_GL000256v2_alt"; locus "HML6_6_GL000256v2_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0142"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 3937748 3942973 . + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0149"; model_cov "3007"; model_pct "49.3"; chr6_GL000256v2_alt rmsk exon 3937748 3938073 2563 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "6"; chr6_GL000256v2_alt rmsk exon 3938076 3938435 2345 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "-5735"; repStart "3"; chr6_GL000256v2_alt rmsk exon 3940014 3941182 9789 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "2997"; repFamily "ERVK"; repLeft "-3099"; repStart "1827"; chr6_GL000256v2_alt rmsk exon 3941182 3942324 8980 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "-544"; repStart "4414"; chr6_GL000256v2_alt rmsk exon 3942298 3942616 2373 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "5997"; repFamily "ERVK"; repLeft "-99"; repStart "5656"; chr6_GL000256v2_alt rmsk exon 3942636 3942973 2914 + . gene_id "HML1_6_GL000256v2_alt"; transcript_id "HML1_6_GL000256v2_alt"; locus "HML1_6_GL000256v2_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0149"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERV9_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 3973441 3974357 . + . gene_id "HERV9_6_GL000256v2_alt"; transcript_id "HERV9_6_GL000256v2_alt"; locus "HERV9_6_GL000256v2_alt"; category "internal"; intModel "HERV9-int"; locid "HERV9-int_0238"; model_cov "922"; model_pct "10.9"; chr6_GL000256v2_alt rmsk exon 3973441 3974357 7601 + . gene_id "HERV9_6_GL000256v2_alt"; transcript_id "HERV9_6_GL000256v2_alt"; locus "HERV9_6_GL000256v2_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0238"; repClass "LTR"; repEnd "6500"; repFamily "ERV1"; repLeft "-1936"; repStart "5578"; ### HERVFH19_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 4107596 4109428 . + . gene_id "HERVFH19_6_GL000256v2_alt"; transcript_id "HERVFH19_6_GL000256v2_alt"; locus "HERVFH19_6_GL000256v2_alt"; category "oneside"; intModel "HERVFH19-int"; locid "HERVFH19-int_0066"; model_cov "1375"; model_pct "17.8"; chr6_GL000256v2_alt rmsk exon 4107596 4108960 9854 + . gene_id "HERVFH19_6_GL000256v2_alt"; transcript_id "HERVFH19_6_GL000256v2_alt"; locus "HERVFH19_6_GL000256v2_alt"; repName "HERVFH19-int"; geneRegion "internal"; locid "HERVFH19-int_0066"; repClass "LTR"; repEnd "7719"; repFamily "ERV1"; repLeft "0"; repStart "6344"; chr6_GL000256v2_alt rmsk exon 4108961 4109428 3384 + . gene_id "HERVFH19_6_GL000256v2_alt"; transcript_id "HERVFH19_6_GL000256v2_alt"; locus "HERVFH19_6_GL000256v2_alt"; repName "LTR19A"; geneRegion "ltr"; locid "HERVFH19-int_0066"; repClass "LTR"; repEnd "484"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML5_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 4498248 4505536 . + . gene_id "HML5_6_GL000256v2_alt"; transcript_id "HML5_6_GL000256v2_alt"; locus "HML5_6_GL000256v2_alt"; category "oneside"; intModel "HERVK22-int"; locid "HERVK22-int_0187"; model_cov "6804"; model_pct "99.5"; chr6_GL000256v2_alt rmsk exon 4498248 4498712 2560 + . gene_id "HML5_6_GL000256v2_alt"; transcript_id "HML5_6_GL000256v2_alt"; locus "HML5_6_GL000256v2_alt"; repName "LTR22B1"; geneRegion "ltr"; locid "HERVK22-int_0187"; repClass "LTR"; repEnd "526"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000256v2_alt rmsk exon 4498715 4500000 9123 + . gene_id "HML5_6_GL000256v2_alt"; transcript_id "HML5_6_GL000256v2_alt"; locus "HML5_6_GL000256v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0187"; repClass "LTR"; repEnd "1282"; repFamily "ERVK"; repLeft "-5555"; repStart "3"; chr6_GL000256v2_alt rmsk exon 4500001 4505536 42451 + . gene_id "HML5_6_GL000256v2_alt"; transcript_id "HML5_6_GL000256v2_alt"; locus "HML5_6_GL000256v2_alt"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0187"; repClass "LTR"; repEnd "6808"; repFamily "ERVK"; repLeft "-29"; repStart "1283"; ### HUERSP3_6_GL000256v2_alt ### chr6_GL000256v2_alt rmsk gene 4566705 4573983 . - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0284"; model_cov "4769"; model_pct "53.5"; chr6_GL000256v2_alt rmsk exon 4566705 4567343 4247 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_GL000256v2_alt rmsk exon 4567344 4567618 1539 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8701"; repStart "0"; chr6_GL000256v2_alt rmsk exon 4568083 4568194 477 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "6972"; repFamily "ERV1"; repLeft "6865"; repStart "-1947"; chr6_GL000256v2_alt rmsk exon 4568195 4568937 4258 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6162"; repStart "-2007"; chr6_GL000256v2_alt rmsk exon 4568924 4569562 4149 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "5576"; repFamily "ERV1"; repLeft "4901"; repStart "-3343"; chr6_GL000256v2_alt rmsk exon 4569565 4569706 1017 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "4681"; repFamily "ERV1"; repLeft "4539"; repStart "-4238"; chr6_GL000256v2_alt rmsk exon 4569700 4570917 8504 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "1768"; repStart "-5635"; chr6_GL000256v2_alt rmsk exon 4571913 4572925 6897 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "3268"; repFamily "ERV1"; repLeft "2251"; repStart "-5651"; chr6_GL000256v2_alt rmsk exon 4572935 4573240 1418 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "2043"; repFamily "ERV1"; repLeft "1757"; repStart "-6876"; chr6_GL000256v2_alt rmsk exon 4573246 4573303 323 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "1597"; repFamily "ERV1"; repLeft "1539"; repStart "-7322"; chr6_GL000256v2_alt rmsk exon 4573349 4573983 4086 - . gene_id "HUERSP3_6_GL000256v2_alt"; transcript_id "HUERSP3_6_GL000256v2_alt"; locus "HUERSP3_6_GL000256v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0284"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_6_GL383533v1_alt ### chr6_GL383533v1_alt rmsk gene 65355 65860 . + . gene_id "ERV316A3_6_GL383533v1_alt"; transcript_id "ERV316A3_6_GL383533v1_alt"; locus "ERV316A3_6_GL383533v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2996"; model_cov "530"; model_pct "10.1"; chr6_GL383533v1_alt rmsk exon 65355 65695 972 + . gene_id "ERV316A3_6_GL383533v1_alt"; transcript_id "ERV316A3_6_GL383533v1_alt"; locus "ERV316A3_6_GL383533v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2996"; repClass "LTR"; repEnd "3035"; repFamily "ERVL"; repLeft "-2191"; repStart "2666"; chr6_GL383533v1_alt rmsk exon 65703 65860 303 + . gene_id "ERV316A3_6_GL383533v1_alt"; transcript_id "ERV316A3_6_GL383533v1_alt"; locus "ERV316A3_6_GL383533v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2996"; repClass "LTR"; repEnd "3373"; repFamily "ERVL"; repLeft "-1853"; repStart "3212"; ### ERVLE_6_KI270797v1_alt ### chr6_KI270797v1_alt rmsk gene 58992 61718 . - . gene_id "ERVLE_6_KI270797v1_alt"; transcript_id "ERVLE_6_KI270797v1_alt"; locus "ERVLE_6_KI270797v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3871"; model_cov "2696"; model_pct "47.6"; chr6_KI270797v1_alt rmsk exon 58992 59900 1718 - . gene_id "ERVLE_6_KI270797v1_alt"; transcript_id "ERVLE_6_KI270797v1_alt"; locus "ERVLE_6_KI270797v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3871"; repClass "LTR"; repEnd "5584"; repFamily "ERVL"; repLeft "4621"; repStart "-83"; chr6_KI270797v1_alt rmsk exon 60203 60686 582 - . gene_id "ERVLE_6_KI270797v1_alt"; transcript_id "ERVLE_6_KI270797v1_alt"; locus "ERVLE_6_KI270797v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3871"; repClass "LTR"; repEnd "4179"; repFamily "ERVL"; repLeft "3407"; repStart "-1488"; chr6_KI270797v1_alt rmsk exon 60740 61001 435 - . gene_id "ERVLE_6_KI270797v1_alt"; transcript_id "ERVLE_6_KI270797v1_alt"; locus "ERVLE_6_KI270797v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3871"; repClass "LTR"; repEnd "3426"; repFamily "ERVL"; repLeft "3176"; repStart "-2241"; chr6_KI270797v1_alt rmsk exon 61024 61718 1027 - . gene_id "ERVLE_6_KI270797v1_alt"; transcript_id "ERVLE_6_KI270797v1_alt"; locus "ERVLE_6_KI270797v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3871"; repClass "LTR"; repEnd "3099"; repFamily "ERVL"; repLeft "2388"; repStart "-2568"; ### MER4_6_KI270797v1_alt ### chr6_KI270797v1_alt rmsk gene 94371 97278 . + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; category "prototype"; intModel "MER4-int"; locid "MER4-int_1021"; model_cov "1838"; model_pct "27.9"; chr6_KI270797v1_alt rmsk exon 94371 94816 3062 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1021"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "2"; chr6_KI270797v1_alt rmsk exon 94822 95410 2989 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1021"; repClass "LTR"; repEnd "616"; repFamily "ERV1"; repLeft "-5982"; repStart "3"; chr6_KI270797v1_alt rmsk exon 95467 95529 2989 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1021"; repClass "LTR"; repEnd "685"; repFamily "ERV1"; repLeft "-5913"; repStart "617"; chr6_KI270797v1_alt rmsk exon 95518 95621 349 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1021"; repClass "LTR"; repEnd "841"; repFamily "ERV1"; repLeft "-5757"; repStart "751"; chr6_KI270797v1_alt rmsk exon 95783 96820 6329 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1021"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5529"; chr6_KI270797v1_alt rmsk exon 96832 97278 3274 + . gene_id "MER4_6_KI270797v1_alt"; transcript_id "MER4_6_KI270797v1_alt"; locus "MER4_6_KI270797v1_alt"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1021"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### MER101_6_KI270798v1_alt ### chr6_KI270798v1_alt rmsk gene 163129 169727 . - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; category "prototype"; intModel "MER101-int"; locid "MER101-int_0459"; model_cov "6014"; model_pct "90.6"; chr6_KI270798v1_alt rmsk exon 163129 163567 2367 - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0459"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr6_KI270798v1_alt rmsk exon 163568 164033 2022 - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0459"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6165"; repStart "0"; chr6_KI270798v1_alt rmsk exon 164061 167315 6062 - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0459"; repClass "LTR"; repEnd "5370"; repFamily "ERV1"; repLeft "1824"; repStart "-1269"; chr6_KI270798v1_alt rmsk exon 167607 169534 5809 - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0459"; repClass "LTR"; repEnd "3845"; repFamily "ERV1"; repLeft "1851"; repStart "-2794"; chr6_KI270798v1_alt rmsk exon 169619 169727 696 - . gene_id "MER101_6_KI270798v1_alt"; transcript_id "MER101_6_KI270798v1_alt"; locus "MER101_6_KI270798v1_alt"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0459"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "338"; repStart "0"; ### LTR57_6_KI270798v1_alt ### chr6_KI270798v1_alt rmsk gene 167224 168237 . - . gene_id "LTR57_6_KI270798v1_alt"; transcript_id "LTR57_6_KI270798v1_alt"; locus "LTR57_6_KI270798v1_alt"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0216"; model_cov "1023"; model_pct "19.1"; chr6_KI270798v1_alt rmsk exon 167224 168237 3093 - . gene_id "LTR57_6_KI270798v1_alt"; transcript_id "LTR57_6_KI270798v1_alt"; locus "LTR57_6_KI270798v1_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0216"; repClass "LTR"; repEnd "1580"; repFamily "ERVL"; repLeft "557"; repStart "-3763"; ### HERVL_6_KI270799v1_alt ### chr6_KI270799v1_alt rmsk gene 103148 105589 . - . gene_id "HERVL_6_KI270799v1_alt"; transcript_id "HERVL_6_KI270799v1_alt"; locus "HERVL_6_KI270799v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1476"; model_cov "2049"; model_pct "36.2"; chr6_KI270799v1_alt rmsk exon 103148 103583 3377 - . gene_id "HERVL_6_KI270799v1_alt"; transcript_id "HERVL_6_KI270799v1_alt"; locus "HERVL_6_KI270799v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1476"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr6_KI270799v1_alt rmsk exon 103584 104442 6614 - . gene_id "HERVL_6_KI270799v1_alt"; transcript_id "HERVL_6_KI270799v1_alt"; locus "HERVL_6_KI270799v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1476"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4781"; repStart "0"; chr6_KI270799v1_alt rmsk exon 104435 105589 8491 - . gene_id "HERVL_6_KI270799v1_alt"; transcript_id "HERVL_6_KI270799v1_alt"; locus "HERVL_6_KI270799v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1476"; repClass "LTR"; repEnd "2316"; repFamily "ERVL"; repLeft "1140"; repStart "-3338"; ### MER34B_6_KI270800v1_alt ### chr6_KI270800v1_alt rmsk gene 170899 172821 . + . gene_id "MER34B_6_KI270800v1_alt"; transcript_id "MER34B_6_KI270800v1_alt"; locus "MER34B_6_KI270800v1_alt"; category "oneside"; intModel "MER34B-int"; locid "MER34B-int_0296"; model_cov "1868"; model_pct "34.9"; chr6_KI270800v1_alt rmsk exon 170899 171000 355 + . gene_id "MER34B_6_KI270800v1_alt"; transcript_id "MER34B_6_KI270800v1_alt"; locus "MER34B_6_KI270800v1_alt"; repName "MER34"; geneRegion "ltr"; locid "MER34B-int_0296"; repClass "LTR"; repEnd "237"; repFamily "ERV1"; repLeft "-305"; repStart "135"; chr6_KI270800v1_alt rmsk exon 171064 172821 3728 + . gene_id "MER34B_6_KI270800v1_alt"; transcript_id "MER34B_6_KI270800v1_alt"; locus "MER34B_6_KI270800v1_alt"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0296"; repClass "LTR"; repEnd "3007"; repFamily "ERV1"; repLeft "-2349"; repStart "1139"; ### ERV316A3_6_KI270801v1_alt ### chr6_KI270801v1_alt rmsk gene 49370 51276 . + . gene_id "ERV316A3_6_KI270801v1_alt"; transcript_id "ERV316A3_6_KI270801v1_alt"; locus "ERV316A3_6_KI270801v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_2998"; model_cov "1656"; model_pct "31.7"; chr6_KI270801v1_alt rmsk exon 49370 51053 2955 + . gene_id "ERV316A3_6_KI270801v1_alt"; transcript_id "ERV316A3_6_KI270801v1_alt"; locus "ERV316A3_6_KI270801v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_2998"; repClass "LTR"; repEnd "4415"; repFamily "ERVL"; repLeft "-811"; repStart "2759"; chr6_KI270801v1_alt rmsk exon 51054 51276 730 + . gene_id "ERV316A3_6_KI270801v1_alt"; transcript_id "ERV316A3_6_KI270801v1_alt"; locus "ERV316A3_6_KI270801v1_alt"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_2998"; repClass "LTR"; repEnd "456"; repFamily "ERVL"; repLeft "0"; repStart "234"; ### HERVL_6_KI270801v1_alt ### chr6_KI270801v1_alt rmsk gene 145726 148059 . + . gene_id "HERVL_6_KI270801v1_alt"; transcript_id "HERVL_6_KI270801v1_alt"; locus "HERVL_6_KI270801v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1478"; model_cov "1928"; model_pct "34.1"; chr6_KI270801v1_alt rmsk exon 145726 146119 2737 + . gene_id "HERVL_6_KI270801v1_alt"; transcript_id "HERVL_6_KI270801v1_alt"; locus "HERVL_6_KI270801v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1478"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr6_KI270801v1_alt rmsk exon 146120 148059 14929 + . gene_id "HERVL_6_KI270801v1_alt"; transcript_id "HERVL_6_KI270801v1_alt"; locus "HERVL_6_KI270801v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1478"; repClass "LTR"; repEnd "1929"; repFamily "ERVL"; repLeft "-3725"; repStart "1"; ### ERVLE_6_KI270801v1_alt ### chr6_KI270801v1_alt rmsk gene 299060 300395 . - . gene_id "ERVLE_6_KI270801v1_alt"; transcript_id "ERVLE_6_KI270801v1_alt"; locus "ERVLE_6_KI270801v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3873"; model_cov "1125"; model_pct "19.9"; chr6_KI270801v1_alt rmsk exon 299060 299967 1821 - . gene_id "ERVLE_6_KI270801v1_alt"; transcript_id "ERVLE_6_KI270801v1_alt"; locus "ERVLE_6_KI270801v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3873"; repClass "LTR"; repEnd "3533"; repFamily "ERVL"; repLeft "2605"; repStart "-2134"; chr6_KI270801v1_alt rmsk exon 300200 300395 1821 - . gene_id "ERVLE_6_KI270801v1_alt"; transcript_id "ERVLE_6_KI270801v1_alt"; locus "ERVLE_6_KI270801v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3873"; repClass "LTR"; repEnd "2604"; repFamily "ERVL"; repLeft "2407"; repStart "-3063"; ### HERVL32_6_KI270802v1_alt ### chr6_KI270802v1_alt rmsk gene 49825 51723 . - . gene_id "HERVL32_6_KI270802v1_alt"; transcript_id "HERVL32_6_KI270802v1_alt"; locus "HERVL32_6_KI270802v1_alt"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0060"; model_cov "1473"; model_pct "43.1"; chr6_KI270802v1_alt rmsk exon 49825 51246 3786 - . gene_id "HERVL32_6_KI270802v1_alt"; transcript_id "HERVL32_6_KI270802v1_alt"; locus "HERVL32_6_KI270802v1_alt"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0060"; repClass "LTR"; repEnd "1532"; repFamily "ERVL"; repLeft "59"; repStart "-1886"; chr6_KI270802v1_alt rmsk exon 51326 51723 1497 - . gene_id "HERVL32_6_KI270802v1_alt"; transcript_id "HERVL32_6_KI270802v1_alt"; locus "HERVL32_6_KI270802v1_alt"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0060"; repClass "LTR"; repEnd "454"; repFamily "ERVL"; repLeft "2"; repStart "-3"; ### MER41_7_KI270803v1_alt ### chr7_KI270803v1_alt rmsk gene 706344 711553 . + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0662"; model_cov "4400"; model_pct "74.0"; chr7_KI270803v1_alt rmsk exon 706344 706887 3857 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0662"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr7_KI270803v1_alt rmsk exon 706973 707623 3687 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0662"; repClass "LTR"; repEnd "636"; repFamily "ERV1"; repLeft "-5310"; repStart "1"; chr7_KI270803v1_alt rmsk exon 707617 708597 4900 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0662"; repClass "LTR"; repEnd "2091"; repFamily "ERV1"; repLeft "-3855"; repStart "904"; chr7_KI270803v1_alt rmsk exon 708654 709917 8053 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0662"; repClass "LTR"; repEnd "4839"; repFamily "ERV1"; repLeft "-1107"; repStart "3365"; chr7_KI270803v1_alt rmsk exon 709944 711008 8053 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0662"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "4840"; chr7_KI270803v1_alt rmsk exon 711009 711553 3866 + . gene_id "MER41_7_KI270803v1_alt"; transcript_id "MER41_7_KI270803v1_alt"; locus "MER41_7_KI270803v1_alt"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0662"; repClass "LTR"; repEnd "554"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_7_KI270803v1_alt ### chr7_KI270803v1_alt rmsk gene 743782 745403 . + . gene_id "ERVLB4_7_KI270803v1_alt"; transcript_id "ERVLB4_7_KI270803v1_alt"; locus "ERVLB4_7_KI270803v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2001"; model_cov "859"; model_pct "15.0"; chr7_KI270803v1_alt rmsk exon 743782 744389 769 + . gene_id "ERVLB4_7_KI270803v1_alt"; transcript_id "ERVLB4_7_KI270803v1_alt"; locus "ERVLB4_7_KI270803v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2001"; repClass "LTR"; repEnd "3229"; repFamily "ERVL"; repLeft "-2485"; repStart "2497"; chr7_KI270803v1_alt rmsk exon 745275 745403 509 + . gene_id "ERVLB4_7_KI270803v1_alt"; transcript_id "ERVLB4_7_KI270803v1_alt"; locus "ERVLB4_7_KI270803v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2001"; repClass "LTR"; repEnd "3808"; repFamily "ERVL"; repLeft "-1906"; repStart "3681"; ### ERVLE_7_KI270803v1_alt ### chr7_KI270803v1_alt rmsk gene 863602 864790 . + . gene_id "ERVLE_7_KI270803v1_alt"; transcript_id "ERVLE_7_KI270803v1_alt"; locus "ERVLE_7_KI270803v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3881"; model_cov "1160"; model_pct "20.5"; chr7_KI270803v1_alt rmsk exon 863602 864187 1122 + . gene_id "ERVLE_7_KI270803v1_alt"; transcript_id "ERVLE_7_KI270803v1_alt"; locus "ERVLE_7_KI270803v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3881"; repClass "LTR"; repEnd "4722"; repFamily "ERVL"; repLeft "-945"; repStart "4034"; chr7_KI270803v1_alt rmsk exon 864325 864790 1248 + . gene_id "ERVLE_7_KI270803v1_alt"; transcript_id "ERVLE_7_KI270803v1_alt"; locus "ERVLE_7_KI270803v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3881"; repClass "LTR"; repEnd "5273"; repFamily "ERVL"; repLeft "-394"; repStart "4801"; ### ERV316A3_7_KI270803v1_alt ### chr7_KI270803v1_alt rmsk gene 1036216 1038228 . - . gene_id "ERV316A3_7_KI270803v1_alt"; transcript_id "ERV316A3_7_KI270803v1_alt"; locus "ERV316A3_7_KI270803v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3000"; model_cov "1603"; model_pct "30.7"; chr7_KI270803v1_alt rmsk exon 1036216 1037813 1808 - . gene_id "ERV316A3_7_KI270803v1_alt"; transcript_id "ERV316A3_7_KI270803v1_alt"; locus "ERV316A3_7_KI270803v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3000"; repClass "LTR"; repEnd "1936"; repFamily "ERVL"; repLeft "333"; repStart "-3290"; chr7_KI270803v1_alt rmsk exon 1038086 1038228 529 - . gene_id "ERV316A3_7_KI270803v1_alt"; transcript_id "ERV316A3_7_KI270803v1_alt"; locus "ERV316A3_7_KI270803v1_alt"; repName "LTR16A1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3000"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "305"; repStart "-3"; ### ERVLE_7_KI270804v1_alt ### chr7_KI270804v1_alt rmsk gene 23330 24113 . - . gene_id "ERVLE_7_KI270804v1_alt"; transcript_id "ERVLE_7_KI270804v1_alt"; locus "ERVLE_7_KI270804v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3882"; model_cov "839"; model_pct "14.8"; chr7_KI270804v1_alt rmsk exon 23330 24113 3025 - . gene_id "ERVLE_7_KI270804v1_alt"; transcript_id "ERVLE_7_KI270804v1_alt"; locus "ERVLE_7_KI270804v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3882"; repClass "LTR"; repEnd "2456"; repFamily "ERVL"; repLeft "1617"; repStart "-3211"; ### ERVLB4_7_KI270805v1_alt ### chr7_KI270805v1_alt rmsk gene 160784 163050 . - . gene_id "ERVLB4_7_KI270805v1_alt"; transcript_id "ERVLB4_7_KI270805v1_alt"; locus "ERVLB4_7_KI270805v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2002"; model_cov "1079"; model_pct "18.9"; chr7_KI270805v1_alt rmsk exon 160784 161610 4223 - . gene_id "ERVLB4_7_KI270805v1_alt"; transcript_id "ERVLB4_7_KI270805v1_alt"; locus "ERVLB4_7_KI270805v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2002"; repClass "LTR"; repEnd "4556"; repFamily "ERVL"; repLeft "3709"; repStart "-1158"; chr7_KI270805v1_alt rmsk exon 162828 163050 619 - . gene_id "ERVLB4_7_KI270805v1_alt"; transcript_id "ERVLB4_7_KI270805v1_alt"; locus "ERVLB4_7_KI270805v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2002"; repClass "LTR"; repEnd "3737"; repFamily "ERVL"; repLeft "3505"; repStart "-1977"; ### HERVIP10FH_7_KI270806v1_alt ### chr7_KI270806v1_alt rmsk gene 88214 91433 . - . gene_id "HERVIP10FH_7_KI270806v1_alt"; transcript_id "HERVIP10FH_7_KI270806v1_alt"; locus "HERVIP10FH_7_KI270806v1_alt"; category "internal"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0233"; model_cov "3242"; model_pct "63.5"; chr7_KI270806v1_alt rmsk exon 88214 88909 10316 - . gene_id "HERVIP10FH_7_KI270806v1_alt"; transcript_id "HERVIP10FH_7_KI270806v1_alt"; locus "HERVIP10FH_7_KI270806v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0233"; repClass "LTR"; repEnd "4014"; repFamily "ERV1"; repLeft "3287"; repStart "-1088"; chr7_KI270806v1_alt rmsk exon 88937 90337 10316 - . gene_id "HERVIP10FH_7_KI270806v1_alt"; transcript_id "HERVIP10FH_7_KI270806v1_alt"; locus "HERVIP10FH_7_KI270806v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0233"; repClass "LTR"; repEnd "3286"; repFamily "ERV1"; repLeft "1932"; repStart "-1816"; chr7_KI270806v1_alt rmsk exon 90319 91433 7885 - . gene_id "HERVIP10FH_7_KI270806v1_alt"; transcript_id "HERVIP10FH_7_KI270806v1_alt"; locus "HERVIP10FH_7_KI270806v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0233"; repClass "LTR"; repEnd "-372"; repFamily "ERV1"; repLeft "-1533"; repStart "-5474"; ### HERVH_7_KI270808v1_alt ### chr7_KI270808v1_alt rmsk gene 94543 100742 . - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1338"; model_cov "5632"; model_pct "73.0"; chr7_KI270808v1_alt rmsk exon 94543 94953 2682 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr7_KI270808v1_alt rmsk exon 94954 96110 8447 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "6529"; repStart "0"; chr7_KI270808v1_alt rmsk exon 96084 96695 4406 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "6380"; repFamily "ERV1"; repLeft "5769"; repStart "-1333"; chr7_KI270808v1_alt rmsk exon 96682 96865 1273 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4488"; repStart "-3033"; chr7_KI270808v1_alt rmsk exon 96868 97373 3353 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr7_KI270808v1_alt rmsk exon 97364 97513 968 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr7_KI270808v1_alt rmsk exon 97493 100330 15599 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr7_KI270808v1_alt rmsk exon 100333 100742 2796 - . gene_id "HERVH_7_KI270808v1_alt"; transcript_id "HERVH_7_KI270808v1_alt"; locus "HERVH_7_KI270808v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1338"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER34B_7_KI270809v1_alt ### chr7_KI270809v1_alt rmsk gene 89357 91020 . + . gene_id "MER34B_7_KI270809v1_alt"; transcript_id "MER34B_7_KI270809v1_alt"; locus "MER34B_7_KI270809v1_alt"; category "internal"; intModel "MER34B-int"; locid "MER34B-int_0297"; model_cov "593"; model_pct "11.1"; chr7_KI270809v1_alt rmsk exon 89357 89748 1669 + . gene_id "MER34B_7_KI270809v1_alt"; transcript_id "MER34B_7_KI270809v1_alt"; locus "MER34B_7_KI270809v1_alt"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0297"; repClass "LTR"; repEnd "3649"; repFamily "ERV1"; repLeft "-1707"; repStart "3341"; chr7_KI270809v1_alt rmsk exon 90067 90174 1669 + . gene_id "MER34B_7_KI270809v1_alt"; transcript_id "MER34B_7_KI270809v1_alt"; locus "MER34B_7_KI270809v1_alt"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0297"; repClass "LTR"; repEnd "3752"; repFamily "ERV1"; repLeft "-1604"; repStart "3650"; chr7_KI270809v1_alt rmsk exon 90827 91020 1669 + . gene_id "MER34B_7_KI270809v1_alt"; transcript_id "MER34B_7_KI270809v1_alt"; locus "MER34B_7_KI270809v1_alt"; repName "MER34B-int"; geneRegion "internal"; locid "MER34B-int_0297"; repClass "LTR"; repEnd "3936"; repFamily "ERV1"; repLeft "-1420"; repStart "3753"; ### LTR23_7_KI270809v1_alt ### chr7_KI270809v1_alt rmsk gene 110707 111100 . + . gene_id "LTR23_7_KI270809v1_alt"; transcript_id "LTR23_7_KI270809v1_alt"; locus "LTR23_7_KI270809v1_alt"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0091"; model_cov "729"; model_pct "14.2"; chr7_KI270809v1_alt rmsk exon 110707 111100 766 + . gene_id "LTR23_7_KI270809v1_alt"; transcript_id "LTR23_7_KI270809v1_alt"; locus "LTR23_7_KI270809v1_alt"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0091"; repClass "LTR"; repEnd "2450"; repFamily "ERV1"; repLeft "-2673"; repStart "1721"; ### ERVLE_7_KI270899v1_alt ### chr7_KI270899v1_alt rmsk gene 59552 60335 . - . gene_id "ERVLE_7_KI270899v1_alt"; transcript_id "ERVLE_7_KI270899v1_alt"; locus "ERVLE_7_KI270899v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3883"; model_cov "839"; model_pct "14.8"; chr7_KI270899v1_alt rmsk exon 59552 60335 3025 - . gene_id "ERVLE_7_KI270899v1_alt"; transcript_id "ERVLE_7_KI270899v1_alt"; locus "ERVLE_7_KI270899v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3883"; repClass "LTR"; repEnd "2456"; repFamily "ERVL"; repLeft "1617"; repStart "-3211"; ### HERVH_8_KI270810v1_alt(a) ### chr8_KI270810v1_alt rmsk gene 57179 62908 . - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1339"; model_cov "4922"; model_pct "63.8"; chr8_KI270810v1_alt rmsk exon 57179 57629 3340 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr8_KI270810v1_alt rmsk exon 57630 58009 2453 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7322"; repStart "0"; chr8_KI270810v1_alt rmsk exon 58008 58223 1339 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr8_KI270810v1_alt rmsk exon 58225 58883 4218 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr8_KI270810v1_alt rmsk exon 58886 59390 3258 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr8_KI270810v1_alt rmsk exon 59381 59539 950 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3134"; repStart "-4423"; chr8_KI270810v1_alt rmsk exon 59510 62455 20097 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "2995"; repFamily "ERV1"; repLeft "1"; repStart "-4718"; chr8_KI270810v1_alt rmsk exon 62458 62908 3359 - . gene_id "HERVH_8_KI270810v1_alt(a)"; transcript_id "HERVH_8_KI270810v1_alt(a)"; locus "HERVH_8_KI270810v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1339"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_8_KI270810v1_alt(b) ### chr8_KI270810v1_alt rmsk gene 363134 368995 . + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1340"; model_cov "5256"; model_pct "68.1"; chr8_KI270810v1_alt rmsk exon 363134 363543 2648 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8_KI270810v1_alt rmsk exon 363546 367328 24308 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "1"; chr8_KI270810v1_alt rmsk exon 367331 367986 4324 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "5146"; repFamily "ERV1"; repLeft "-2567"; repStart "4488"; chr8_KI270810v1_alt rmsk exon 367991 368205 1246 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8_KI270810v1_alt rmsk exon 368208 368582 2324 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7326"; chr8_KI270810v1_alt rmsk exon 368583 368995 2586 + . gene_id "HERVH_8_KI270810v1_alt(b)"; transcript_id "HERVH_8_KI270810v1_alt(b)"; locus "HERVH_8_KI270810v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1340"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HERVH_8_KI270813v1_alt ### chr8_KI270813v1_alt rmsk gene 85346 91227 . + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1341"; model_cov "4900"; model_pct "63.5"; chr8_KI270813v1_alt rmsk exon 85346 85796 3336 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; chr8_KI270813v1_alt rmsk exon 85799 88892 20232 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "-4726"; repStart "1"; chr8_KI270813v1_alt rmsk exon 88887 89031 760 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "-4423"; repStart "3140"; chr8_KI270813v1_alt rmsk exon 89031 89521 3380 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "-3720"; repStart "3500"; chr8_KI270813v1_alt rmsk exon 89524 90180 4188 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "-2564"; repStart "4488"; chr8_KI270813v1_alt rmsk exon 90182 90396 1316 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "-1894"; repStart "5600"; chr8_KI270813v1_alt rmsk exon 90395 90774 2566 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "0"; repStart "7322"; chr8_KI270813v1_alt rmsk exon 90775 91227 3437 + . gene_id "HERVH_8_KI270813v1_alt"; transcript_id "HERVH_8_KI270813v1_alt"; locus "HERVH_8_KI270813v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1341"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### HML2_8_KI270813v1_alt(a) ### chr8_KI270813v1_alt rmsk gene 180978 185867 . - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0136"; model_cov "3848"; model_pct "51.1"; chr8_KI270813v1_alt rmsk exon 180978 181945 8834 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8_KI270813v1_alt rmsk exon 182041 185867 63496 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3593"; repStart "-95"; ### HML2_8_KI270813v1_alt(b) ### chr8_KI270813v1_alt rmsk gene 185912 190440 . - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0137"; model_cov "3591"; model_pct "47.7"; chr8_KI270813v1_alt rmsk exon 185912 189480 63496 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3850"; repStart "-95"; chr8_KI270813v1_alt rmsk exon 189481 190440 8730 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4B_8_KI270813v1_alt(a) ### chr8_KI270813v1_alt rmsk gene 213590 217281 . - . gene_id "MER4B_8_KI270813v1_alt(a)"; transcript_id "MER4B_8_KI270813v1_alt(a)"; locus "MER4B_8_KI270813v1_alt(a)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0596"; model_cov "4186"; model_pct "61.9"; chr8_KI270813v1_alt rmsk exon 213590 215330 9822 - . gene_id "MER4B_8_KI270813v1_alt(a)"; transcript_id "MER4B_8_KI270813v1_alt(a)"; locus "MER4B_8_KI270813v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0596"; repClass "LTR"; repEnd "6300"; repFamily "ERV1"; repLeft "4452"; repStart "-458"; chr8_KI270813v1_alt rmsk exon 215330 215977 3396 - . gene_id "MER4B_8_KI270813v1_alt(a)"; transcript_id "MER4B_8_KI270813v1_alt(a)"; locus "MER4B_8_KI270813v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0596"; repClass "LTR"; repEnd "4088"; repFamily "ERV1"; repLeft "3421"; repStart "-2670"; chr8_KI270813v1_alt rmsk exon 215965 217281 7078 - . gene_id "MER4B_8_KI270813v1_alt(a)"; transcript_id "MER4B_8_KI270813v1_alt(a)"; locus "MER4B_8_KI270813v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0596"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "1421"; repStart "-3666"; ### MER4B_8_KI270813v1_alt(b) ### chr8_KI270813v1_alt rmsk gene 217653 218594 . - . gene_id "MER4B_8_KI270813v1_alt(b)"; transcript_id "MER4B_8_KI270813v1_alt(b)"; locus "MER4B_8_KI270813v1_alt(b)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0597"; model_cov "983"; model_pct "14.5"; chr8_KI270813v1_alt rmsk exon 217653 218038 7078 - . gene_id "MER4B_8_KI270813v1_alt(b)"; transcript_id "MER4B_8_KI270813v1_alt(b)"; locus "MER4B_8_KI270813v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0597"; repClass "LTR"; repEnd "3092"; repFamily "ERV1"; repLeft "2601"; repStart "-3666"; chr8_KI270813v1_alt rmsk exon 218051 218290 912 - . gene_id "MER4B_8_KI270813v1_alt(b)"; transcript_id "MER4B_8_KI270813v1_alt(b)"; locus "MER4B_8_KI270813v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0597"; repClass "LTR"; repEnd "1179"; repFamily "ERV1"; repLeft "945"; repStart "-5579"; chr8_KI270813v1_alt rmsk exon 218339 218594 1412 - . gene_id "MER4B_8_KI270813v1_alt(b)"; transcript_id "MER4B_8_KI270813v1_alt(b)"; locus "MER4B_8_KI270813v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0597"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "589"; repStart "-5911"; ### HERVE_8_KI270813v1_alt ### chr8_KI270813v1_alt rmsk gene 270651 274703 . + . gene_id "HERVE_8_KI270813v1_alt"; transcript_id "HERVE_8_KI270813v1_alt"; locus "HERVE_8_KI270813v1_alt"; category "internal"; intModel "HERVE-int"; locid "HERVE-int_0179"; model_cov "4056"; model_pct "51.9"; chr8_KI270813v1_alt rmsk exon 270651 271787 24724 + . gene_id "HERVE_8_KI270813v1_alt"; transcript_id "HERVE_8_KI270813v1_alt"; locus "HERVE_8_KI270813v1_alt"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0179"; repClass "LTR"; repEnd "2284"; repFamily "ERV1"; repLeft "-5529"; repStart "1108"; chr8_KI270813v1_alt rmsk exon 271923 274703 24724 + . gene_id "HERVE_8_KI270813v1_alt"; transcript_id "HERVE_8_KI270813v1_alt"; locus "HERVE_8_KI270813v1_alt"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0179"; repClass "LTR"; repEnd "5165"; repFamily "ERV1"; repLeft "-2648"; repStart "2285"; ### ERVLB4_8_KI270813v1_alt(a) ### chr8_KI270813v1_alt rmsk gene 292193 292741 . - . gene_id "ERVLB4_8_KI270813v1_alt(a)"; transcript_id "ERVLB4_8_KI270813v1_alt(a)"; locus "ERVLB4_8_KI270813v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2004"; model_cov "581"; model_pct "10.2"; chr8_KI270813v1_alt rmsk exon 292193 292741 2707 - . gene_id "ERVLB4_8_KI270813v1_alt(a)"; transcript_id "ERVLB4_8_KI270813v1_alt(a)"; locus "ERVLB4_8_KI270813v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2004"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1523"; repStart "-3610"; ### ERVLB4_8_KI270813v1_alt(b) ### chr8_KI270813v1_alt rmsk gene 298322 298890 . - . gene_id "ERVLB4_8_KI270813v1_alt(b)"; transcript_id "ERVLB4_8_KI270813v1_alt(b)"; locus "ERVLB4_8_KI270813v1_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2005"; model_cov "601"; model_pct "10.5"; chr8_KI270813v1_alt rmsk exon 298322 298890 2807 - . gene_id "ERVLB4_8_KI270813v1_alt(b)"; transcript_id "ERVLB4_8_KI270813v1_alt(b)"; locus "ERVLB4_8_KI270813v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2005"; repClass "LTR"; repEnd "2104"; repFamily "ERVL"; repLeft "1503"; repStart "-3610"; ### HERVFRD_8_KI270814v1_alt(a) ### chr8_KI270814v1_alt rmsk gene 29163 30630 . - . gene_id "HERVFRD_8_KI270814v1_alt(a)"; transcript_id "HERVFRD_8_KI270814v1_alt(a)"; locus "HERVFRD_8_KI270814v1_alt(a)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0235"; model_cov "931"; model_pct "12.9"; chr8_KI270814v1_alt rmsk exon 29163 30021 2326 - . gene_id "HERVFRD_8_KI270814v1_alt(a)"; transcript_id "HERVFRD_8_KI270814v1_alt(a)"; locus "HERVFRD_8_KI270814v1_alt(a)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0235"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "730"; repStart "-5544"; chr8_KI270814v1_alt rmsk exon 30022 30630 1580 - . gene_id "HERVFRD_8_KI270814v1_alt(a)"; transcript_id "HERVFRD_8_KI270814v1_alt(a)"; locus "HERVFRD_8_KI270814v1_alt(a)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0235"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "11"; repStart "-123"; ### HERVFRD_8_KI270814v1_alt(b) ### chr8_KI270814v1_alt rmsk gene 35906 37355 . - . gene_id "HERVFRD_8_KI270814v1_alt(b)"; transcript_id "HERVFRD_8_KI270814v1_alt(b)"; locus "HERVFRD_8_KI270814v1_alt(b)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0236"; model_cov "908"; model_pct "12.6"; chr8_KI270814v1_alt rmsk exon 35906 36748 2218 - . gene_id "HERVFRD_8_KI270814v1_alt(b)"; transcript_id "HERVFRD_8_KI270814v1_alt(b)"; locus "HERVFRD_8_KI270814v1_alt(b)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0236"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "729"; repStart "-5568"; chr8_KI270814v1_alt rmsk exon 36759 37355 1715 - . gene_id "HERVFRD_8_KI270814v1_alt(b)"; transcript_id "HERVFRD_8_KI270814v1_alt(b)"; locus "HERVFRD_8_KI270814v1_alt(b)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0236"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "10"; repStart "-134"; ### HERVFRD_8_KI270814v1_alt(c) ### chr8_KI270814v1_alt rmsk gene 41287 42736 . - . gene_id "HERVFRD_8_KI270814v1_alt(c)"; transcript_id "HERVFRD_8_KI270814v1_alt(c)"; locus "HERVFRD_8_KI270814v1_alt(c)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0237"; model_cov "908"; model_pct "12.6"; chr8_KI270814v1_alt rmsk exon 41287 42129 2227 - . gene_id "HERVFRD_8_KI270814v1_alt(c)"; transcript_id "HERVFRD_8_KI270814v1_alt(c)"; locus "HERVFRD_8_KI270814v1_alt(c)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0237"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "729"; repStart "-5568"; chr8_KI270814v1_alt rmsk exon 42140 42736 1715 - . gene_id "HERVFRD_8_KI270814v1_alt(c)"; transcript_id "HERVFRD_8_KI270814v1_alt(c)"; locus "HERVFRD_8_KI270814v1_alt(c)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0237"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "10"; repStart "-134"; ### HERVFRD_8_KI270814v1_alt(d) ### chr8_KI270814v1_alt rmsk gene 46668 48117 . - . gene_id "HERVFRD_8_KI270814v1_alt(d)"; transcript_id "HERVFRD_8_KI270814v1_alt(d)"; locus "HERVFRD_8_KI270814v1_alt(d)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0238"; model_cov "908"; model_pct "12.6"; chr8_KI270814v1_alt rmsk exon 46668 47510 2227 - . gene_id "HERVFRD_8_KI270814v1_alt(d)"; transcript_id "HERVFRD_8_KI270814v1_alt(d)"; locus "HERVFRD_8_KI270814v1_alt(d)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0238"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "729"; repStart "-5568"; chr8_KI270814v1_alt rmsk exon 47521 48117 1715 - . gene_id "HERVFRD_8_KI270814v1_alt(d)"; transcript_id "HERVFRD_8_KI270814v1_alt(d)"; locus "HERVFRD_8_KI270814v1_alt(d)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0238"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "10"; repStart "-134"; ### HERVFRD_8_KI270814v1_alt(e) ### chr8_KI270814v1_alt rmsk gene 52049 53499 . - . gene_id "HERVFRD_8_KI270814v1_alt(e)"; transcript_id "HERVFRD_8_KI270814v1_alt(e)"; locus "HERVFRD_8_KI270814v1_alt(e)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0239"; model_cov "898"; model_pct "12.5"; chr8_KI270814v1_alt rmsk exon 52049 52881 2164 - . gene_id "HERVFRD_8_KI270814v1_alt(e)"; transcript_id "HERVFRD_8_KI270814v1_alt(e)"; locus "HERVFRD_8_KI270814v1_alt(e)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0239"; repClass "LTR"; repEnd "1637"; repFamily "ERV1"; repLeft "739"; repStart "-5568"; chr8_KI270814v1_alt rmsk exon 52891 53499 1485 - . gene_id "HERVFRD_8_KI270814v1_alt(e)"; transcript_id "HERVFRD_8_KI270814v1_alt(e)"; locus "HERVFRD_8_KI270814v1_alt(e)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0239"; repClass "LTR"; repEnd "611"; repFamily "ERV1"; repLeft "10"; repStart "-123"; ### HERVFRD_8_KI270814v1_alt(f) ### chr8_KI270814v1_alt rmsk gene 57418 60617 . - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; category "unknown"; intModel "MER50-int"; locid "MER50-int_0240"; model_cov "922"; model_pct "12.8"; chr8_KI270814v1_alt rmsk exon 57418 58027 2192 - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0240"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "973"; repStart "-5544"; chr8_KI270814v1_alt rmsk exon 58028 58458 1073 - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0240"; repClass "LTR"; repEnd "426"; repFamily "ERV1"; repLeft "1"; repStart "-308"; chr8_KI270814v1_alt rmsk exon 59280 59773 1276 - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0240"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "9"; repStart "-217"; chr8_KI270814v1_alt rmsk exon 60017 60254 852 - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0240"; repClass "LTR"; repEnd "964"; repFamily "ERV1"; repLeft "730"; repStart "-6241"; chr8_KI270814v1_alt rmsk exon 60260 60617 1070 - . gene_id "HERVFRD_8_KI270814v1_alt(f)"; transcript_id "HERVFRD_8_KI270814v1_alt(f)"; locus "HERVFRD_8_KI270814v1_alt(f)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0240"; repClass "LTR"; repEnd "606"; repFamily "ERV1"; repLeft "257"; repStart "-128"; ### HUERSP3_8_KI270814v1_alt ### chr8_KI270814v1_alt rmsk gene 60814 63193 . - . gene_id "HUERSP3_8_KI270814v1_alt"; transcript_id "HUERSP3_8_KI270814v1_alt"; locus "HUERSP3_8_KI270814v1_alt"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0285"; model_cov "1962"; model_pct "22.0"; chr8_KI270814v1_alt rmsk exon 60814 61490 2944 - . gene_id "HUERSP3_8_KI270814v1_alt"; transcript_id "HUERSP3_8_KI270814v1_alt"; locus "HUERSP3_8_KI270814v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0285"; repClass "LTR"; repEnd "2455"; repFamily "ERV1"; repLeft "1791"; repStart "-6464"; chr8_KI270814v1_alt rmsk exon 61489 62042 2693 - . gene_id "HUERSP3_8_KI270814v1_alt"; transcript_id "HUERSP3_8_KI270814v1_alt"; locus "HUERSP3_8_KI270814v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0285"; repClass "LTR"; repEnd "1300"; repFamily "ERV1"; repLeft "642"; repStart "-7619"; chr8_KI270814v1_alt rmsk exon 62086 62717 2627 - . gene_id "HUERSP3_8_KI270814v1_alt"; transcript_id "HUERSP3_8_KI270814v1_alt"; locus "HUERSP3_8_KI270814v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0285"; repClass "LTR"; repEnd "641"; repFamily "ERV1"; repLeft "1"; repStart "-8278"; chr8_KI270814v1_alt rmsk exon 62718 63193 2134 - . gene_id "HUERSP3_8_KI270814v1_alt"; transcript_id "HUERSP3_8_KI270814v1_alt"; locus "HUERSP3_8_KI270814v1_alt"; repName "LTR9D"; geneRegion "ltr"; locid "HUERS-P3-int_0285"; repClass "LTR"; repEnd "645"; repFamily "ERV1"; repLeft "175"; repStart "0"; ### HERVFRD_8_KI270814v1_alt(g) ### chr8_KI270814v1_alt rmsk gene 135828 138077 . - . gene_id "HERVFRD_8_KI270814v1_alt(g)"; transcript_id "HERVFRD_8_KI270814v1_alt(g)"; locus "HERVFRD_8_KI270814v1_alt(g)"; category "oneside"; intModel "MER50-int"; locid "MER50-int_0241"; model_cov "1645"; model_pct "22.8"; chr8_KI270814v1_alt rmsk exon 135828 137365 5467 - . gene_id "HERVFRD_8_KI270814v1_alt(g)"; transcript_id "HERVFRD_8_KI270814v1_alt(g)"; locus "HERVFRD_8_KI270814v1_alt(g)"; repName "MER50-int"; geneRegion "internal"; locid "MER50-int_0241"; repClass "LTR"; repEnd "1661"; repFamily "ERV1"; repLeft "16"; repStart "-5544"; chr8_KI270814v1_alt rmsk exon 137381 138077 3697 - . gene_id "HERVFRD_8_KI270814v1_alt(g)"; transcript_id "HERVFRD_8_KI270814v1_alt(g)"; locus "HERVFRD_8_KI270814v1_alt(g)"; repName "MER50"; geneRegion "ltr"; locid "MER50-int_0241"; repClass "LTR"; repEnd "711"; repFamily "ERV1"; repLeft "1"; repStart "-23"; ### ERV316A3_8_KI270816v1_alt ### chr8_KI270816v1_alt rmsk gene 141533 142502 . - . gene_id "ERV316A3_8_KI270816v1_alt"; transcript_id "ERV316A3_8_KI270816v1_alt"; locus "ERV316A3_8_KI270816v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3001"; model_cov "527"; model_pct "10.1"; chr8_KI270816v1_alt rmsk exon 141533 141666 281 - . gene_id "ERV316A3_8_KI270816v1_alt"; transcript_id "ERV316A3_8_KI270816v1_alt"; locus "ERV316A3_8_KI270816v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3001"; repClass "LTR"; repEnd "3077"; repFamily "ERVL"; repLeft "2938"; repStart "-2149"; chr8_KI270816v1_alt rmsk exon 141768 141951 349 - . gene_id "ERV316A3_8_KI270816v1_alt"; transcript_id "ERV316A3_8_KI270816v1_alt"; locus "ERV316A3_8_KI270816v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3001"; repClass "LTR"; repEnd "3065"; repFamily "ERVL"; repLeft "2875"; repStart "-2161"; chr8_KI270816v1_alt rmsk exon 142310 142502 379 - . gene_id "ERV316A3_8_KI270816v1_alt"; transcript_id "ERV316A3_8_KI270816v1_alt"; locus "ERV316A3_8_KI270816v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3001"; repClass "LTR"; repEnd "2422"; repFamily "ERVL"; repLeft "2224"; repStart "-2804"; ### HARLEQUIN_8_KI270816v1_alt ### chr8_KI270816v1_alt rmsk gene 152515 157434 . + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0209"; model_cov "3529"; model_pct "51.2"; chr8_KI270816v1_alt rmsk exon 152515 154653 21923 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "5508"; repFamily "ERV1"; repLeft "-1388"; repStart "3363"; chr8_KI270816v1_alt rmsk exon 154950 155322 21923 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "5871"; repFamily "ERV1"; repLeft "-1025"; repStart "5509"; chr8_KI270816v1_alt rmsk exon 155628 156047 21923 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "6330"; repFamily "ERV1"; repLeft "-566"; repStart "5872"; chr8_KI270816v1_alt rmsk exon 156129 156548 21923 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "6791"; repFamily "ERV1"; repLeft "-105"; repStart "6331"; chr8_KI270816v1_alt rmsk exon 156864 156988 21923 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "6896"; repFamily "ERV1"; repLeft "0"; repStart "6792"; chr8_KI270816v1_alt rmsk exon 156989 157434 3490 + . gene_id "HARLEQUIN_8_KI270816v1_alt"; transcript_id "HARLEQUIN_8_KI270816v1_alt"; locus "HARLEQUIN_8_KI270816v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0209"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLB4_8_KI270816v1_alt ### chr8_KI270816v1_alt rmsk gene 221403 222439 . - . gene_id "ERVLB4_8_KI270816v1_alt"; transcript_id "ERVLB4_8_KI270816v1_alt"; locus "ERVLB4_8_KI270816v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2007"; model_cov "1011"; model_pct "17.7"; chr8_KI270816v1_alt rmsk exon 221403 222262 1192 - . gene_id "ERVLB4_8_KI270816v1_alt"; transcript_id "ERVLB4_8_KI270816v1_alt"; locus "ERVLB4_8_KI270816v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2007"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "1719"; repStart "-3085"; chr8_KI270816v1_alt rmsk exon 222339 222439 304 - . gene_id "ERVLB4_8_KI270816v1_alt"; transcript_id "ERVLB4_8_KI270816v1_alt"; locus "ERVLB4_8_KI270816v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2007"; repClass "LTR"; repEnd "1461"; repFamily "ERVL"; repLeft "1360"; repStart "-4253"; ### ERVLE_8_KI270816v1_alt ### chr8_KI270816v1_alt rmsk gene 232154 237234 . - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3885"; model_cov "2372"; model_pct "41.9"; chr8_KI270816v1_alt rmsk exon 232154 232405 1421 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "4648"; repFamily "ERVL"; repLeft "4379"; repStart "-1019"; chr8_KI270816v1_alt rmsk exon 232711 233001 1421 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "4378"; repFamily "ERVL"; repLeft "4069"; repStart "-1289"; chr8_KI270816v1_alt rmsk exon 233369 233743 1977 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "3606"; repFamily "ERVL"; repLeft "3212"; repStart "-2061"; chr8_KI270816v1_alt rmsk exon 234036 234380 1977 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "2860"; repStart "-2456"; chr8_KI270816v1_alt rmsk exon 234684 234706 1977 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "2859"; repFamily "ERVL"; repLeft "2837"; repStart "-2808"; chr8_KI270816v1_alt rmsk exon 234855 235185 1977 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "2836"; repFamily "ERVL"; repLeft "2506"; repStart "-2831"; chr8_KI270816v1_alt rmsk exon 236559 237234 1657 - . gene_id "ERVLE_8_KI270816v1_alt"; transcript_id "ERVLE_8_KI270816v1_alt"; locus "ERVLE_8_KI270816v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3885"; repClass "LTR"; repEnd "2489"; repFamily "ERVL"; repLeft "1792"; repStart "-3178"; ### PRIMA41_8_KI270817v1_alt ### chr8_KI270817v1_alt rmsk gene 40351 43584 . + . gene_id "PRIMA41_8_KI270817v1_alt"; transcript_id "PRIMA41_8_KI270817v1_alt"; locus "PRIMA41_8_KI270817v1_alt"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0190"; model_cov "1941"; model_pct "25.0"; chr8_KI270817v1_alt rmsk exon 40351 40464 1607 + . gene_id "PRIMA41_8_KI270817v1_alt"; transcript_id "PRIMA41_8_KI270817v1_alt"; locus "PRIMA41_8_KI270817v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0190"; repClass "LTR"; repEnd "4297"; repFamily "ERV1"; repLeft "-3459"; repStart "4209"; chr8_KI270817v1_alt rmsk exon 40769 41568 1607 + . gene_id "PRIMA41_8_KI270817v1_alt"; transcript_id "PRIMA41_8_KI270817v1_alt"; locus "PRIMA41_8_KI270817v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0190"; repClass "LTR"; repEnd "5086"; repFamily "ERV1"; repLeft "-2670"; repStart "4298"; chr8_KI270817v1_alt rmsk exon 41857 41978 1607 + . gene_id "PRIMA41_8_KI270817v1_alt"; transcript_id "PRIMA41_8_KI270817v1_alt"; locus "PRIMA41_8_KI270817v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0190"; repClass "LTR"; repEnd "5205"; repFamily "ERV1"; repLeft "-2551"; repStart "5087"; chr8_KI270817v1_alt rmsk exon 42581 43584 1607 + . gene_id "PRIMA41_8_KI270817v1_alt"; transcript_id "PRIMA41_8_KI270817v1_alt"; locus "PRIMA41_8_KI270817v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0190"; repClass "LTR"; repEnd "6153"; repFamily "ERV1"; repLeft "-1603"; repStart "5206"; ### PABLB_8_KI270817v1_alt ### chr8_KI270817v1_alt rmsk gene 53298 55959 . - . gene_id "PABLB_8_KI270817v1_alt"; transcript_id "PABLB_8_KI270817v1_alt"; locus "PABLB_8_KI270817v1_alt"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0113"; model_cov "2655"; model_pct "37.3"; chr8_KI270817v1_alt rmsk exon 53298 53733 2062 - . gene_id "PABLB_8_KI270817v1_alt"; transcript_id "PABLB_8_KI270817v1_alt"; locus "PABLB_8_KI270817v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0113"; repClass "LTR"; repEnd "5370"; repFamily "ERV1"; repLeft "4926"; repStart "-1752"; chr8_KI270817v1_alt rmsk exon 53730 55087 6828 - . gene_id "PABLB_8_KI270817v1_alt"; transcript_id "PABLB_8_KI270817v1_alt"; locus "PABLB_8_KI270817v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0113"; repClass "LTR"; repEnd "4061"; repFamily "ERV1"; repLeft "2690"; repStart "-3061"; chr8_KI270817v1_alt rmsk exon 55086 55256 918 - . gene_id "PABLB_8_KI270817v1_alt"; transcript_id "PABLB_8_KI270817v1_alt"; locus "PABLB_8_KI270817v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0113"; repClass "LTR"; repEnd "1369"; repFamily "ERV1"; repLeft "1200"; repStart "-5753"; chr8_KI270817v1_alt rmsk exon 55324 55959 1219 - . gene_id "PABLB_8_KI270817v1_alt"; transcript_id "PABLB_8_KI270817v1_alt"; locus "PABLB_8_KI270817v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0113"; repClass "LTR"; repEnd "1134"; repFamily "ERV1"; repLeft "463"; repStart "-5988"; ### ERVLE_8_KI270817v1_alt ### chr8_KI270817v1_alt rmsk gene 98503 100643 . - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3888"; model_cov "1233"; model_pct "21.8"; chr8_KI270817v1_alt rmsk exon 98503 98802 713 - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3888"; repClass "LTR"; repEnd "3987"; repFamily "ERVL"; repLeft "3669"; repStart "-1680"; chr8_KI270817v1_alt rmsk exon 99481 99700 538 - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3888"; repClass "LTR"; repEnd "3667"; repFamily "ERVL"; repLeft "3452"; repStart "-2000"; chr8_KI270817v1_alt rmsk exon 100015 100113 308 - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3888"; repClass "LTR"; repEnd "3277"; repFamily "ERVL"; repLeft "3177"; repStart "-2390"; chr8_KI270817v1_alt rmsk exon 100088 100291 707 - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3888"; repClass "LTR"; repEnd "2941"; repFamily "ERVL"; repLeft "2733"; repStart "-2726"; chr8_KI270817v1_alt rmsk exon 100268 100643 548 - . gene_id "ERVLE_8_KI270817v1_alt"; transcript_id "ERVLE_8_KI270817v1_alt"; locus "ERVLE_8_KI270817v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3888"; repClass "LTR"; repEnd "2112"; repFamily "ERVL"; repLeft "1720"; repStart "-3555"; ### MER4B_8_KI270817v1_alt ### chr8_KI270817v1_alt rmsk gene 104542 109632 . - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0598"; model_cov "2720"; model_pct "40.2"; chr8_KI270817v1_alt rmsk exon 104542 105139 1970 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "6070"; repFamily "ERV1"; repLeft "5495"; repStart "-688"; chr8_KI270817v1_alt rmsk exon 105362 105455 524 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "5857"; repFamily "ERV1"; repLeft "5761"; repStart "-901"; chr8_KI270817v1_alt rmsk exon 106029 106090 3884 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "4703"; repFamily "ERV1"; repLeft "4653"; repStart "-2055"; chr8_KI270817v1_alt rmsk exon 106388 106952 3884 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "4652"; repFamily "ERV1"; repLeft "4101"; repStart "-2106"; chr8_KI270817v1_alt rmsk exon 107225 107709 3884 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "4100"; repFamily "ERV1"; repLeft "3649"; repStart "-2658"; chr8_KI270817v1_alt rmsk exon 108292 108982 3712 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "3652"; repFamily "ERV1"; repLeft "2944"; repStart "-3106"; chr8_KI270817v1_alt rmsk exon 109292 109632 3712 - . gene_id "MER4B_8_KI270817v1_alt"; transcript_id "MER4B_8_KI270817v1_alt"; locus "MER4B_8_KI270817v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0598"; repClass "LTR"; repEnd "2943"; repFamily "ERV1"; repLeft "2654"; repStart "-3815"; ### ERVLB4_8_KI270821v1_alt ### chr8_KI270821v1_alt rmsk gene 143558 144261 . + . gene_id "ERVLB4_8_KI270821v1_alt"; transcript_id "ERVLB4_8_KI270821v1_alt"; locus "ERVLB4_8_KI270821v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2009"; model_cov "658"; model_pct "11.5"; chr8_KI270821v1_alt rmsk exon 143558 143787 445 + . gene_id "ERVLB4_8_KI270821v1_alt"; transcript_id "ERVLB4_8_KI270821v1_alt"; locus "ERVLB4_8_KI270821v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2009"; repClass "LTR"; repEnd "1968"; repFamily "ERVL"; repLeft "-3746"; repStart "1684"; chr8_KI270821v1_alt rmsk exon 143895 144261 831 + . gene_id "ERVLB4_8_KI270821v1_alt"; transcript_id "ERVLB4_8_KI270821v1_alt"; locus "ERVLB4_8_KI270821v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2009"; repClass "LTR"; repEnd "2495"; repFamily "ERVL"; repLeft "-3219"; repStart "2121"; ### ERVLE_8_KI270821v1_alt(a) ### chr8_KI270821v1_alt rmsk gene 525385 526568 . - . gene_id "ERVLE_8_KI270821v1_alt(a)"; transcript_id "ERVLE_8_KI270821v1_alt(a)"; locus "ERVLE_8_KI270821v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3889"; model_cov "781"; model_pct "13.8"; chr8_KI270821v1_alt rmsk exon 525385 525713 661 - . gene_id "ERVLE_8_KI270821v1_alt(a)"; transcript_id "ERVLE_8_KI270821v1_alt(a)"; locus "ERVLE_8_KI270821v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3889"; repClass "LTR"; repEnd "2465"; repFamily "ERVL"; repLeft "2131"; repStart "-3202"; chr8_KI270821v1_alt rmsk exon 526150 526568 661 - . gene_id "ERVLE_8_KI270821v1_alt(a)"; transcript_id "ERVLE_8_KI270821v1_alt(a)"; locus "ERVLE_8_KI270821v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3889"; repClass "LTR"; repEnd "2130"; repFamily "ERVL"; repLeft "1683"; repStart "-3537"; ### ERV316A3_8_KI270821v1_alt ### chr8_KI270821v1_alt rmsk gene 889953 890735 . + . gene_id "ERV316A3_8_KI270821v1_alt"; transcript_id "ERV316A3_8_KI270821v1_alt"; locus "ERV316A3_8_KI270821v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3003"; model_cov "775"; model_pct "14.8"; chr8_KI270821v1_alt rmsk exon 889953 890477 851 + . gene_id "ERV316A3_8_KI270821v1_alt"; transcript_id "ERV316A3_8_KI270821v1_alt"; locus "ERV316A3_8_KI270821v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3003"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "-594"; repStart "4090"; chr8_KI270821v1_alt rmsk exon 890523 890735 487 + . gene_id "ERV316A3_8_KI270821v1_alt"; transcript_id "ERV316A3_8_KI270821v1_alt"; locus "ERV316A3_8_KI270821v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3003"; repClass "LTR"; repEnd "4940"; repFamily "ERVL"; repLeft "-286"; repStart "4707"; ### ERVLE_8_KI270821v1_alt(b) ### chr8_KI270821v1_alt rmsk gene 953119 954254 . - . gene_id "ERVLE_8_KI270821v1_alt(b)"; transcript_id "ERVLE_8_KI270821v1_alt(b)"; locus "ERVLE_8_KI270821v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3892"; model_cov "937"; model_pct "16.5"; chr8_KI270821v1_alt rmsk exon 953119 953384 1347 - . gene_id "ERVLE_8_KI270821v1_alt(b)"; transcript_id "ERVLE_8_KI270821v1_alt(b)"; locus "ERVLE_8_KI270821v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3892"; repClass "LTR"; repEnd "2863"; repFamily "ERVL"; repLeft "2603"; repStart "-2804"; chr8_KI270821v1_alt rmsk exon 953582 954254 1347 - . gene_id "ERVLE_8_KI270821v1_alt(b)"; transcript_id "ERVLE_8_KI270821v1_alt(b)"; locus "ERVLE_8_KI270821v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3892"; repClass "LTR"; repEnd "2602"; repFamily "ERVL"; repLeft "1925"; repStart "-3065"; ### ERVLE_8_KI270822v1_alt(a) ### chr8_KI270822v1_alt rmsk gene 19008 20361 . - . gene_id "ERVLE_8_KI270822v1_alt(a)"; transcript_id "ERVLE_8_KI270822v1_alt(a)"; locus "ERVLE_8_KI270822v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3894"; model_cov "1286"; model_pct "22.7"; chr8_KI270822v1_alt rmsk exon 19008 19661 1277 - . gene_id "ERVLE_8_KI270822v1_alt(a)"; transcript_id "ERVLE_8_KI270822v1_alt(a)"; locus "ERVLE_8_KI270822v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3894"; repClass "LTR"; repEnd "3081"; repFamily "ERVL"; repLeft "2325"; repStart "-2586"; chr8_KI270822v1_alt rmsk exon 19801 20118 952 - . gene_id "ERVLE_8_KI270822v1_alt(a)"; transcript_id "ERVLE_8_KI270822v1_alt(a)"; locus "ERVLE_8_KI270822v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3894"; repClass "LTR"; repEnd "1992"; repFamily "ERVL"; repLeft "1672"; repStart "-3675"; chr8_KI270822v1_alt rmsk exon 20165 20361 564 - . gene_id "ERVLE_8_KI270822v1_alt(a)"; transcript_id "ERVLE_8_KI270822v1_alt(a)"; locus "ERVLE_8_KI270822v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3894"; repClass "LTR"; repEnd "1589"; repFamily "ERVL"; repLeft "1379"; repStart "-4078"; ### ERVLE_8_KI270822v1_alt(b) ### chr8_KI270822v1_alt rmsk gene 89256 91317 . - . gene_id "ERVLE_8_KI270822v1_alt(b)"; transcript_id "ERVLE_8_KI270822v1_alt(b)"; locus "ERVLE_8_KI270822v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3895"; model_cov "1503"; model_pct "26.5"; chr8_KI270822v1_alt rmsk exon 89256 89620 711 - . gene_id "ERVLE_8_KI270822v1_alt(b)"; transcript_id "ERVLE_8_KI270822v1_alt(b)"; locus "ERVLE_8_KI270822v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3895"; repClass "LTR"; repEnd "4684"; repFamily "ERVL"; repLeft "4302"; repStart "-983"; chr8_KI270822v1_alt rmsk exon 89795 90338 812 - . gene_id "ERVLE_8_KI270822v1_alt(b)"; transcript_id "ERVLE_8_KI270822v1_alt(b)"; locus "ERVLE_8_KI270822v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3895"; repClass "LTR"; repEnd "2711"; repFamily "ERVL"; repLeft "2166"; repStart "-2956"; chr8_KI270822v1_alt rmsk exon 90433 90661 344 - . gene_id "ERVLE_8_KI270822v1_alt(b)"; transcript_id "ERVLE_8_KI270822v1_alt(b)"; locus "ERVLE_8_KI270822v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3895"; repClass "LTR"; repEnd "1649"; repFamily "ERVL"; repLeft "1392"; repStart "-4018"; chr8_KI270822v1_alt rmsk exon 90961 91317 344 - . gene_id "ERVLE_8_KI270822v1_alt(b)"; transcript_id "ERVLE_8_KI270822v1_alt(b)"; locus "ERVLE_8_KI270822v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3895"; repClass "LTR"; repEnd "1391"; repFamily "ERVL"; repLeft "1072"; repStart "-4276"; ### HUERSP3_8_KI270822v1_alt ### chr8_KI270822v1_alt rmsk gene 231775 236327 . - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0286"; model_cov "4376"; model_pct "49.1"; chr8_KI270822v1_alt rmsk exon 231775 232298 2912 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "6730"; repFamily "ERV1"; repLeft "6162"; repStart "-2189"; chr8_KI270822v1_alt rmsk exon 232273 232365 3851 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "5589"; repFamily "ERV1"; repLeft "5501"; repStart "-3330"; chr8_KI270822v1_alt rmsk exon 232683 233259 3851 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "5500"; repFamily "ERV1"; repLeft "4902"; repStart "-3419"; chr8_KI270822v1_alt rmsk exon 233264 233408 786 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "4680"; repFamily "ERV1"; repLeft "4539"; repStart "-4239"; chr8_KI270822v1_alt rmsk exon 233402 235747 7737 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "406"; repStart "-5635"; chr8_KI270822v1_alt rmsk exon 235743 235840 373 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "1605"; repFamily "ERV1"; repLeft "1502"; repStart "-7314"; chr8_KI270822v1_alt rmsk exon 235860 236327 1895 - . gene_id "HUERSP3_8_KI270822v1_alt"; transcript_id "HUERSP3_8_KI270822v1_alt"; locus "HUERSP3_8_KI270822v1_alt"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0286"; repClass "LTR"; repEnd "481"; repFamily "ERV1"; repLeft "7"; repStart "-163"; ### ERV316A3_8_KI270822v1_alt(a) ### chr8_KI270822v1_alt rmsk gene 421397 423652 . + . gene_id "ERV316A3_8_KI270822v1_alt(a)"; transcript_id "ERV316A3_8_KI270822v1_alt(a)"; locus "ERV316A3_8_KI270822v1_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3005"; model_cov "1681"; model_pct "32.2"; chr8_KI270822v1_alt rmsk exon 421397 421687 647 + . gene_id "ERV316A3_8_KI270822v1_alt(a)"; transcript_id "ERV316A3_8_KI270822v1_alt(a)"; locus "ERV316A3_8_KI270822v1_alt(a)"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3005"; repClass "LTR"; repEnd "371"; repFamily "ERVL"; repLeft "-80"; repStart "77"; chr8_KI270822v1_alt rmsk exon 421957 422166 380 + . gene_id "ERV316A3_8_KI270822v1_alt(a)"; transcript_id "ERV316A3_8_KI270822v1_alt(a)"; locus "ERV316A3_8_KI270822v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3005"; repClass "LTR"; repEnd "729"; repFamily "ERVL"; repLeft "-4497"; repStart "491"; chr8_KI270822v1_alt rmsk exon 422365 423652 2770 + . gene_id "ERV316A3_8_KI270822v1_alt(a)"; transcript_id "ERV316A3_8_KI270822v1_alt(a)"; locus "ERV316A3_8_KI270822v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3005"; repClass "LTR"; repEnd "2403"; repFamily "ERVL"; repLeft "-2823"; repStart "960"; ### ERV316A3_8_KI270822v1_alt(b) ### chr8_KI270822v1_alt rmsk gene 525523 527084 . - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3008"; model_cov "697"; model_pct "13.3"; chr8_KI270822v1_alt rmsk exon 525523 525765 586 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "538"; repFamily "ERVL"; repLeft "286"; repStart "0"; chr8_KI270822v1_alt rmsk exon 525835 526192 656 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "3894"; repFamily "ERVL"; repLeft "3519"; repStart "-1332"; chr8_KI270822v1_alt rmsk exon 526323 526476 295 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "3366"; repFamily "ERVL"; repLeft "3214"; repStart "-1860"; chr8_KI270822v1_alt rmsk exon 526608 526773 421 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "3076"; repFamily "ERVL"; repLeft "2906"; repStart "-2150"; chr8_KI270822v1_alt rmsk exon 526910 526961 246 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "521"; repFamily "ERVL"; repLeft "467"; repStart "-17"; chr8_KI270822v1_alt rmsk exon 526996 527084 316 - . gene_id "ERV316A3_8_KI270822v1_alt(b)"; transcript_id "ERV316A3_8_KI270822v1_alt(b)"; locus "ERV316A3_8_KI270822v1_alt(b)"; repName "LTR16E1"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3008"; repClass "LTR"; repEnd "380"; repFamily "ERVL"; repLeft "286"; repStart "-158"; ### ERVLB4_8_KI270822v1_alt ### chr8_KI270822v1_alt rmsk gene 570077 571286 . + . gene_id "ERVLB4_8_KI270822v1_alt"; transcript_id "ERVLB4_8_KI270822v1_alt"; locus "ERVLB4_8_KI270822v1_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2011"; model_cov "754"; model_pct "13.2"; chr8_KI270822v1_alt rmsk exon 570077 570430 1587 + . gene_id "ERVLB4_8_KI270822v1_alt"; transcript_id "ERVLB4_8_KI270822v1_alt"; locus "ERVLB4_8_KI270822v1_alt"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2011"; repClass "LTR"; repEnd "366"; repFamily "ERVL"; repLeft "-48"; repStart "1"; chr8_KI270822v1_alt rmsk exon 570530 571286 3126 + . gene_id "ERVLB4_8_KI270822v1_alt"; transcript_id "ERVLB4_8_KI270822v1_alt"; locus "ERVLB4_8_KI270822v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2011"; repClass "LTR"; repEnd "802"; repFamily "ERVL"; repLeft "-4912"; repStart "48"; ### HERVIP10F_8_KI270822v1_alt ### chr8_KI270822v1_alt rmsk gene 598836 603745 . - . gene_id "HERVIP10F_8_KI270822v1_alt"; transcript_id "HERVIP10F_8_KI270822v1_alt"; locus "HERVIP10F_8_KI270822v1_alt"; category "oneside"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0132"; model_cov "4340"; model_pct "56.1"; chr8_KI270822v1_alt rmsk exon 598836 603213 21502 - . gene_id "HERVIP10F_8_KI270822v1_alt"; transcript_id "HERVIP10F_8_KI270822v1_alt"; locus "HERVIP10F_8_KI270822v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0132"; repClass "LTR"; repEnd "4298"; repFamily "ERV1"; repLeft "-42"; repStart "-3439"; chr8_KI270822v1_alt rmsk exon 603214 603745 3004 - . gene_id "HERVIP10F_8_KI270822v1_alt"; transcript_id "HERVIP10F_8_KI270822v1_alt"; locus "HERVIP10F_8_KI270822v1_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0132"; repClass "LTR"; repEnd "513"; repFamily "ERV1"; repLeft "1"; repStart "-10"; ### HML3_8_KI270822v1_alt ### chr8_KI270822v1_alt rmsk gene 621021 624459 . + . gene_id "HML3_8_KI270822v1_alt"; transcript_id "HML3_8_KI270822v1_alt"; locus "HML3_8_KI270822v1_alt"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0284"; model_cov "2609"; model_pct "43.3"; chr8_KI270822v1_alt rmsk exon 621021 621531 4082 + . gene_id "HML3_8_KI270822v1_alt"; transcript_id "HML3_8_KI270822v1_alt"; locus "HML3_8_KI270822v1_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0284"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8_KI270822v1_alt rmsk exon 621532 623390 19623 + . gene_id "HML3_8_KI270822v1_alt"; transcript_id "HML3_8_KI270822v1_alt"; locus "HML3_8_KI270822v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0284"; repClass "LTR"; repEnd "1858"; repFamily "ERVK"; repLeft "-4163"; repStart "1"; chr8_KI270822v1_alt rmsk exon 623699 624330 19623 + . gene_id "HML3_8_KI270822v1_alt"; transcript_id "HML3_8_KI270822v1_alt"; locus "HML3_8_KI270822v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0284"; repClass "LTR"; repEnd "2481"; repFamily "ERVK"; repLeft "-3540"; repStart "1859"; chr8_KI270822v1_alt rmsk exon 624330 624459 1058 + . gene_id "HML3_8_KI270822v1_alt"; transcript_id "HML3_8_KI270822v1_alt"; locus "HML3_8_KI270822v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0284"; repClass "LTR"; repEnd "2796"; repFamily "ERVK"; repLeft "-3225"; repStart "2666"; ### ERVLE_9_GL383539v1_alt(a) ### chr9_GL383539v1_alt rmsk gene 4376 6724 . + . gene_id "ERVLE_9_GL383539v1_alt(a)"; transcript_id "ERVLE_9_GL383539v1_alt(a)"; locus "ERVLE_9_GL383539v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3897"; model_cov "2072"; model_pct "36.6"; chr9_GL383539v1_alt rmsk exon 4376 4537 563 + . gene_id "ERVLE_9_GL383539v1_alt(a)"; transcript_id "ERVLE_9_GL383539v1_alt(a)"; locus "ERVLE_9_GL383539v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3897"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "-2836"; repStart "2669"; chr9_GL383539v1_alt rmsk exon 4553 5262 1407 + . gene_id "ERVLE_9_GL383539v1_alt(a)"; transcript_id "ERVLE_9_GL383539v1_alt(a)"; locus "ERVLE_9_GL383539v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3897"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-1931"; repStart "2884"; chr9_GL383539v1_alt rmsk exon 5569 5647 1123 + . gene_id "ERVLE_9_GL383539v1_alt(a)"; transcript_id "ERVLE_9_GL383539v1_alt(a)"; locus "ERVLE_9_GL383539v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3897"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1858"; repStart "3737"; chr9_GL383539v1_alt rmsk exon 5730 6724 1447 + . gene_id "ERVLE_9_GL383539v1_alt(a)"; transcript_id "ERVLE_9_GL383539v1_alt(a)"; locus "ERVLE_9_GL383539v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3897"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "-737"; repStart "3944"; ### ERVLE_9_GL383539v1_alt(b) ### chr9_GL383539v1_alt rmsk gene 25307 27655 . + . gene_id "ERVLE_9_GL383539v1_alt(b)"; transcript_id "ERVLE_9_GL383539v1_alt(b)"; locus "ERVLE_9_GL383539v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3898"; model_cov "2072"; model_pct "36.6"; chr9_GL383539v1_alt rmsk exon 25307 25468 563 + . gene_id "ERVLE_9_GL383539v1_alt(b)"; transcript_id "ERVLE_9_GL383539v1_alt(b)"; locus "ERVLE_9_GL383539v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3898"; repClass "LTR"; repEnd "2831"; repFamily "ERVL"; repLeft "-2836"; repStart "2669"; chr9_GL383539v1_alt rmsk exon 25484 26193 1407 + . gene_id "ERVLE_9_GL383539v1_alt(b)"; transcript_id "ERVLE_9_GL383539v1_alt(b)"; locus "ERVLE_9_GL383539v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3898"; repClass "LTR"; repEnd "3736"; repFamily "ERVL"; repLeft "-1931"; repStart "2884"; chr9_GL383539v1_alt rmsk exon 26500 26578 1123 + . gene_id "ERVLE_9_GL383539v1_alt(b)"; transcript_id "ERVLE_9_GL383539v1_alt(b)"; locus "ERVLE_9_GL383539v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3898"; repClass "LTR"; repEnd "3809"; repFamily "ERVL"; repLeft "-1858"; repStart "3737"; chr9_GL383539v1_alt rmsk exon 26661 27655 1447 + . gene_id "ERVLE_9_GL383539v1_alt(b)"; transcript_id "ERVLE_9_GL383539v1_alt(b)"; locus "ERVLE_9_GL383539v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3898"; repClass "LTR"; repEnd "4930"; repFamily "ERVL"; repLeft "-737"; repStart "3944"; ### MER41_9_KI270823v1_alt ### chr9_KI270823v1_alt rmsk gene 167382 168861 . + . gene_id "MER41_9_KI270823v1_alt"; transcript_id "MER41_9_KI270823v1_alt"; locus "MER41_9_KI270823v1_alt"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0663"; model_cov "620"; model_pct "10.4"; chr9_KI270823v1_alt rmsk exon 167382 167735 4031 + . gene_id "MER41_9_KI270823v1_alt"; transcript_id "MER41_9_KI270823v1_alt"; locus "MER41_9_KI270823v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0663"; repClass "LTR"; repEnd "5684"; repFamily "ERV1"; repLeft "-262"; repStart "5323"; chr9_KI270823v1_alt rmsk exon 168040 168314 4031 + . gene_id "MER41_9_KI270823v1_alt"; transcript_id "MER41_9_KI270823v1_alt"; locus "MER41_9_KI270823v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0663"; repClass "LTR"; repEnd "5944"; repFamily "ERV1"; repLeft "-2"; repStart "5685"; chr9_KI270823v1_alt rmsk exon 168315 168861 3837 + . gene_id "MER41_9_KI270823v1_alt"; transcript_id "MER41_9_KI270823v1_alt"; locus "MER41_9_KI270823v1_alt"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0663"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-88"; repStart "1"; ### HML1_9_KI270823v1_alt ### chr9_KI270823v1_alt rmsk gene 174637 179061 . - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0150"; model_cov "2163"; model_pct "35.5"; chr9_KI270823v1_alt rmsk exon 174637 175206 3974 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "8"; repStart "0"; chr9_KI270823v1_alt rmsk exon 175215 175362 794 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr9_KI270823v1_alt rmsk exon 175426 175687 1762 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "5896"; repFamily "ERVK"; repLeft "5612"; repStart "-200"; chr9_KI270823v1_alt rmsk exon 175687 176032 1273 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "5465"; repFamily "ERVK"; repLeft "5011"; repStart "-631"; chr9_KI270823v1_alt rmsk exon 176032 176151 820 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "4398"; repFamily "ERVK"; repLeft "4277"; repStart "-1698"; chr9_KI270823v1_alt rmsk exon 177293 177753 3399 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "2175"; repFamily "ERVK"; repLeft "1704"; repStart "-3921"; chr9_KI270823v1_alt rmsk exon 177788 178478 5032 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "698"; repFamily "ERVK"; repLeft "1"; repStart "-5398"; chr9_KI270823v1_alt rmsk exon 178479 179061 4229 - . gene_id "HML1_9_KI270823v1_alt"; transcript_id "HML1_9_KI270823v1_alt"; locus "HML1_9_KI270823v1_alt"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0150"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "4"; repStart "0"; ### HERVL_9_KI270823v1_alt ### chr9_KI270823v1_alt rmsk gene 229224 231488 . + . gene_id "HERVL_9_KI270823v1_alt"; transcript_id "HERVL_9_KI270823v1_alt"; locus "HERVL_9_KI270823v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1479"; model_cov "1721"; model_pct "30.4"; chr9_KI270823v1_alt rmsk exon 229224 230914 13212 + . gene_id "HERVL_9_KI270823v1_alt"; transcript_id "HERVL_9_KI270823v1_alt"; locus "HERVL_9_KI270823v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1479"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3933"; chr9_KI270823v1_alt rmsk exon 230915 231297 2859 + . gene_id "HERVL_9_KI270823v1_alt"; transcript_id "HERVL_9_KI270823v1_alt"; locus "HERVL_9_KI270823v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1479"; repClass "LTR"; repEnd "389"; repFamily "ERVL"; repLeft "-55"; repStart "1"; chr9_KI270823v1_alt rmsk exon 231439 231488 256 + . gene_id "HERVL_9_KI270823v1_alt"; transcript_id "HERVL_9_KI270823v1_alt"; locus "HERVL_9_KI270823v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1479"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "396"; ### LTR19_10_GL383546v1_alt ### chr10_GL383546v1_alt rmsk gene 99280 103740 . - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; category "oneside"; intModel "LTR19-int"; locid "LTR19-int_0094"; model_cov "4939"; model_pct "88.4"; chr10_GL383546v1_alt rmsk exon 99280 99381 792 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "486"; repFamily "ERV1"; repLeft "384"; repStart "0"; chr10_GL383546v1_alt rmsk exon 99363 99590 1458 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19A"; geneRegion "ltr"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "239"; repFamily "ERV1"; repLeft "1"; repStart "-247"; chr10_GL383546v1_alt rmsk exon 99592 100319 5567 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "5585"; repFamily "ERV1"; repLeft "4824"; repStart "-1"; chr10_GL383546v1_alt rmsk exon 100319 100409 6759 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "4533"; repStart "-967"; chr10_GL383546v1_alt rmsk exon 100700 101468 6759 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "4532"; repFamily "ERV1"; repLeft "3766"; repStart "-1054"; chr10_GL383546v1_alt rmsk exon 102000 103740 12550 - . gene_id "LTR19_10_GL383546v1_alt"; transcript_id "LTR19_10_GL383546v1_alt"; locus "LTR19_10_GL383546v1_alt"; repName "LTR19-int"; geneRegion "internal"; locid "LTR19-int_0094"; repClass "LTR"; repEnd "4116"; repFamily "ERV1"; repLeft "790"; repStart "-1470"; ### HML6_10_GL383546v1_alt ### chr10_GL383546v1_alt rmsk gene 103744 111673 . + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0144"; model_cov "7325"; model_pct "100.0"; chr10_GL383546v1_alt rmsk exon 103744 104079 2368 + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0144"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "95"; chr10_GL383546v1_alt rmsk exon 104081 105590 6422 + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0144"; repClass "LTR"; repEnd "1546"; repFamily "ERVK"; repLeft "-5656"; repStart "1"; chr10_GL383546v1_alt rmsk exon 105587 105718 752 + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0144"; repClass "LTR"; repEnd "3377"; repFamily "ERVK"; repLeft "-3825"; repStart "3245"; chr10_GL383546v1_alt rmsk exon 105709 111225 25843 + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0144"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "-2"; repStart "1552"; chr10_GL383546v1_alt rmsk exon 111228 111673 3251 + . gene_id "HML6_10_GL383546v1_alt"; transcript_id "HML6_10_GL383546v1_alt"; locus "HML6_10_GL383546v1_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0144"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_10_GL383546v1_alt(a) ### chr10_GL383546v1_alt rmsk gene 161283 166231 . + . gene_id "HERVL_10_GL383546v1_alt(a)"; transcript_id "HERVL_10_GL383546v1_alt(a)"; locus "HERVL_10_GL383546v1_alt(a)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1480"; model_cov "4522"; model_pct "80.0"; chr10_GL383546v1_alt rmsk exon 161283 161722 3391 + . gene_id "HERVL_10_GL383546v1_alt(a)"; transcript_id "HERVL_10_GL383546v1_alt(a)"; locus "HERVL_10_GL383546v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1480"; repClass "LTR"; repEnd "437"; repFamily "ERVL"; repLeft "-7"; repStart "1"; chr10_GL383546v1_alt rmsk exon 161726 166231 36382 + . gene_id "HERVL_10_GL383546v1_alt(a)"; transcript_id "HERVL_10_GL383546v1_alt(a)"; locus "HERVL_10_GL383546v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1480"; repClass "LTR"; repEnd "4523"; repFamily "ERVL"; repLeft "-1131"; repStart "1"; ### HERVL_10_GL383546v1_alt(b) ### chr10_GL383546v1_alt rmsk gene 171759 173346 . + . gene_id "HERVL_10_GL383546v1_alt(b)"; transcript_id "HERVL_10_GL383546v1_alt(b)"; locus "HERVL_10_GL383546v1_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1481"; model_cov "1145"; model_pct "20.3"; chr10_GL383546v1_alt rmsk exon 171759 172901 9264 + . gene_id "HERVL_10_GL383546v1_alt(b)"; transcript_id "HERVL_10_GL383546v1_alt(b)"; locus "HERVL_10_GL383546v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1481"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4509"; chr10_GL383546v1_alt rmsk exon 172902 173346 3374 + . gene_id "HERVL_10_GL383546v1_alt(b)"; transcript_id "HERVL_10_GL383546v1_alt(b)"; locus "HERVL_10_GL383546v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1481"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; ### HERVL_10_KI270824v1_alt ### chr10_KI270824v1_alt rmsk gene 84624 88630 . + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1483"; model_cov "3251"; model_pct "57.5"; chr10_KI270824v1_alt rmsk exon 84624 85064 2653 + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1483"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr10_KI270824v1_alt rmsk exon 85065 85326 1668 + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1483"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "-5391"; repStart "1"; chr10_KI270824v1_alt rmsk exon 85316 85813 3332 + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1483"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "-3840"; repStart "1317"; chr10_KI270824v1_alt rmsk exon 85807 88245 13582 + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1483"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "3162"; chr10_KI270824v1_alt rmsk exon 88246 88630 2631 + . gene_id "HERVL_10_KI270824v1_alt"; transcript_id "HERVL_10_KI270824v1_alt"; locus "HERVL_10_KI270824v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1483"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "-58"; repStart "1"; ### ERV316A3_10_KI270824v1_alt(a) ### chr10_KI270824v1_alt rmsk gene 167836 169391 . - . gene_id "ERV316A3_10_KI270824v1_alt(a)"; transcript_id "ERV316A3_10_KI270824v1_alt(a)"; locus "ERV316A3_10_KI270824v1_alt(a)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3009"; model_cov "1300"; model_pct "24.9"; chr10_KI270824v1_alt rmsk exon 167836 167975 402 - . gene_id "ERV316A3_10_KI270824v1_alt(a)"; transcript_id "ERV316A3_10_KI270824v1_alt(a)"; locus "ERV316A3_10_KI270824v1_alt(a)"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3009"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "2"; repStart "-294"; chr10_KI270824v1_alt rmsk exon 167979 168249 430 - . gene_id "ERV316A3_10_KI270824v1_alt(a)"; transcript_id "ERV316A3_10_KI270824v1_alt(a)"; locus "ERV316A3_10_KI270824v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3009"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "4967"; repStart "0"; chr10_KI270824v1_alt rmsk exon 168382 169391 2945 - . gene_id "ERV316A3_10_KI270824v1_alt(a)"; transcript_id "ERV316A3_10_KI270824v1_alt(a)"; locus "ERV316A3_10_KI270824v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3009"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "3553"; repStart "-632"; ### ERV316A3_10_KI270824v1_alt(b) ### chr10_KI270824v1_alt rmsk gene 172238 173554 . - . gene_id "ERV316A3_10_KI270824v1_alt(b)"; transcript_id "ERV316A3_10_KI270824v1_alt(b)"; locus "ERV316A3_10_KI270824v1_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3010"; model_cov "786"; model_pct "15.0"; chr10_KI270824v1_alt rmsk exon 172238 172406 1086 - . gene_id "ERV316A3_10_KI270824v1_alt(b)"; transcript_id "ERV316A3_10_KI270824v1_alt(b)"; locus "ERV316A3_10_KI270824v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3010"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "2963"; repStart "-2090"; chr10_KI270824v1_alt rmsk exon 172774 173248 1086 - . gene_id "ERV316A3_10_KI270824v1_alt(b)"; transcript_id "ERV316A3_10_KI270824v1_alt(b)"; locus "ERV316A3_10_KI270824v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3010"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "2505"; repStart "-2264"; chr10_KI270824v1_alt rmsk exon 173402 173554 303 - . gene_id "ERV316A3_10_KI270824v1_alt(b)"; transcript_id "ERV316A3_10_KI270824v1_alt(b)"; locus "ERV316A3_10_KI270824v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3010"; repClass "LTR"; repEnd "2301"; repFamily "ERVL"; repLeft "2145"; repStart "-2925"; ### ERV316A3_11_GL383547v1_alt ### chr11_GL383547v1_alt rmsk gene 7080 12472 . + . gene_id "ERV316A3_11_GL383547v1_alt"; transcript_id "ERV316A3_11_GL383547v1_alt"; locus "ERV316A3_11_GL383547v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3011"; model_cov "4857"; model_pct "92.9"; chr11_GL383547v1_alt rmsk exon 7080 11950 5693 + . gene_id "ERV316A3_11_GL383547v1_alt"; transcript_id "ERV316A3_11_GL383547v1_alt"; locus "ERV316A3_11_GL383547v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3011"; repClass "LTR"; repEnd "4959"; repFamily "ERVL"; repLeft "-267"; repStart "102"; chr11_GL383547v1_alt rmsk exon 12161 12472 452 + . gene_id "ERV316A3_11_GL383547v1_alt"; transcript_id "ERV316A3_11_GL383547v1_alt"; locus "ERV316A3_11_GL383547v1_alt"; repName "LTR16A"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3011"; repClass "LTR"; repEnd "344"; repFamily "ERVL"; repLeft "-107"; repStart "21"; ### ERVLB4_11_JH159136v1_alt ### chr11_JH159136v1_alt rmsk gene 122208 125713 . + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2014"; model_cov "2402"; model_pct "42.0"; chr11_JH159136v1_alt rmsk exon 122208 122326 442 + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2014"; repClass "LTR"; repEnd "3433"; repFamily "ERVL"; repLeft "-2281"; repStart "3286"; chr11_JH159136v1_alt rmsk exon 122808 124128 10842 + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2014"; repClass "LTR"; repEnd "4781"; repFamily "ERVL"; repLeft "-933"; repStart "3456"; chr11_JH159136v1_alt rmsk exon 124251 125164 10842 + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2014"; repClass "LTR"; repEnd "5712"; repFamily "ERVL"; repLeft "-2"; repStart "4782"; chr11_JH159136v1_alt rmsk exon 125180 125598 2084 + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_2014"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "19"; chr11_JH159136v1_alt rmsk exon 125682 125713 2084 + . gene_id "ERVLB4_11_JH159136v1_alt"; transcript_id "ERVLB4_11_JH159136v1_alt"; locus "ERVLB4_11_JH159136v1_alt"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-B4-int_2014"; repClass "LTR"; repEnd "511"; repFamily "ERVL"; repLeft "-9"; repStart "458"; ### HML1_11_JH159136v1_alt ### chr11_JH159136v1_alt rmsk gene 138594 143974 . - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; category "prototype"; intModel "HERVK14-int"; locid "HERVK14-int_0151"; model_cov "3089"; model_pct "50.7"; chr11_JH159136v1_alt rmsk exon 138594 138933 2667 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "343"; repFamily "ERVK"; repLeft "1"; repStart "-1"; chr11_JH159136v1_alt rmsk exon 138937 139053 693 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "6096"; repFamily "ERVK"; repLeft "5960"; repStart "0"; chr11_JH159136v1_alt rmsk exon 139116 139334 1640 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5656"; repStart "-199"; chr11_JH159136v1_alt rmsk exon 139334 139970 5055 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "5552"; repFamily "ERVK"; repLeft "4913"; repStart "-544"; chr11_JH159136v1_alt rmsk exon 139959 141667 13452 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "3540"; repFamily "ERVK"; repLeft "1827"; repStart "-2556"; chr11_JH159136v1_alt rmsk exon 143281 143636 2606 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "361"; repFamily "ERVK"; repLeft "1"; repStart "-5735"; chr11_JH159136v1_alt rmsk exon 143637 143974 2533 - . gene_id "HML1_11_JH159136v1_alt"; transcript_id "HML1_11_JH159136v1_alt"; locus "HML1_11_JH159136v1_alt"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0151"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### MER101_11_JH159137v1_alt(a) ### chr11_JH159137v1_alt rmsk gene 46167 48207 . - . gene_id "MER101_11_JH159137v1_alt(a)"; transcript_id "MER101_11_JH159137v1_alt(a)"; locus "MER101_11_JH159137v1_alt(a)"; category "internal"; intModel "MER101-int"; locid "MER101-int_0461"; model_cov "2568"; model_pct "38.7"; chr11_JH159137v1_alt rmsk exon 46167 46782 2550 - . gene_id "MER101_11_JH159137v1_alt(a)"; transcript_id "MER101_11_JH159137v1_alt(a)"; locus "MER101_11_JH159137v1_alt(a)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0461"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "6003"; repStart "0"; chr11_JH159137v1_alt rmsk exon 46782 48207 2888 - . gene_id "MER101_11_JH159137v1_alt(a)"; transcript_id "MER101_11_JH159137v1_alt(a)"; locus "MER101_11_JH159137v1_alt(a)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0461"; repClass "LTR"; repEnd "4583"; repFamily "ERV1"; repLeft "2651"; repStart "-2056"; ### MER101_11_JH159137v1_alt(b) ### chr11_JH159137v1_alt rmsk gene 48508 51385 . - . gene_id "MER101_11_JH159137v1_alt(b)"; transcript_id "MER101_11_JH159137v1_alt(b)"; locus "MER101_11_JH159137v1_alt(b)"; category "internal"; intModel "MER101-int"; locid "MER101-int_0462"; model_cov "2796"; model_pct "42.1"; chr11_JH159137v1_alt rmsk exon 48508 48646 1740 - . gene_id "MER101_11_JH159137v1_alt(b)"; transcript_id "MER101_11_JH159137v1_alt(b)"; locus "MER101_11_JH159137v1_alt(b)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0462"; repClass "LTR"; repEnd "4734"; repFamily "ERV1"; repLeft "4602"; repStart "-1905"; chr11_JH159137v1_alt rmsk exon 48647 49594 4620 - . gene_id "MER101_11_JH159137v1_alt(b)"; transcript_id "MER101_11_JH159137v1_alt(b)"; locus "MER101_11_JH159137v1_alt(b)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0462"; repClass "LTR"; repEnd "4726"; repFamily "ERV1"; repLeft "3088"; repStart "-1913"; chr11_JH159137v1_alt rmsk exon 49774 51385 2370 - . gene_id "MER101_11_JH159137v1_alt(b)"; transcript_id "MER101_11_JH159137v1_alt(b)"; locus "MER101_11_JH159137v1_alt(b)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0462"; repClass "LTR"; repEnd "2762"; repFamily "ERV1"; repLeft "1736"; repStart "-3877"; ### MER101_11_JH159137v1_alt(c) ### chr11_JH159137v1_alt rmsk gene 51703 53653 . - . gene_id "MER101_11_JH159137v1_alt(c)"; transcript_id "MER101_11_JH159137v1_alt(c)"; locus "MER101_11_JH159137v1_alt(c)"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0463"; model_cov "1564"; model_pct "23.6"; chr11_JH159137v1_alt rmsk exon 51703 51819 2370 - . gene_id "MER101_11_JH159137v1_alt(c)"; transcript_id "MER101_11_JH159137v1_alt(c)"; locus "MER101_11_JH159137v1_alt(c)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0463"; repClass "LTR"; repEnd "3611"; repFamily "ERV1"; repLeft "3512"; repStart "-3028"; chr11_JH159137v1_alt rmsk exon 51816 53380 3675 - . gene_id "MER101_11_JH159137v1_alt(c)"; transcript_id "MER101_11_JH159137v1_alt(c)"; locus "MER101_11_JH159137v1_alt(c)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0463"; repClass "LTR"; repEnd "3292"; repFamily "ERV1"; repLeft "1827"; repStart "-3347"; chr11_JH159137v1_alt rmsk exon 53437 53653 1085 - . gene_id "MER101_11_JH159137v1_alt(c)"; transcript_id "MER101_11_JH159137v1_alt(c)"; locus "MER101_11_JH159137v1_alt(c)"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0463"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "225"; repStart "0"; ### ERV316A3_11_JH159137v1_alt ### chr11_JH159137v1_alt rmsk gene 132405 134779 . + . gene_id "ERV316A3_11_JH159137v1_alt"; transcript_id "ERV316A3_11_JH159137v1_alt"; locus "ERV316A3_11_JH159137v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3012"; model_cov "1689"; model_pct "32.3"; chr11_JH159137v1_alt rmsk exon 132405 132545 439 + . gene_id "ERV316A3_11_JH159137v1_alt"; transcript_id "ERV316A3_11_JH159137v1_alt"; locus "ERV316A3_11_JH159137v1_alt"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3012"; repClass "LTR"; repEnd "487"; repFamily "ERVL"; repLeft "-2"; repStart "355"; chr11_JH159137v1_alt rmsk exon 133061 133849 793 + . gene_id "ERV316A3_11_JH159137v1_alt"; transcript_id "ERV316A3_11_JH159137v1_alt"; locus "ERV316A3_11_JH159137v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3012"; repClass "LTR"; repEnd "1545"; repFamily "ERVL"; repLeft "-3681"; repStart "751"; chr11_JH159137v1_alt rmsk exon 133919 134779 2629 + . gene_id "ERV316A3_11_JH159137v1_alt"; transcript_id "ERV316A3_11_JH159137v1_alt"; locus "ERV316A3_11_JH159137v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3012"; repClass "LTR"; repEnd "3036"; repFamily "ERVL"; repLeft "-2190"; repStart "2141"; ### ERVLE_11_JH159137v1_alt ### chr11_JH159137v1_alt rmsk gene 155035 158168 . + . gene_id "ERVLE_11_JH159137v1_alt"; transcript_id "ERVLE_11_JH159137v1_alt"; locus "ERVLE_11_JH159137v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3900"; model_cov "896"; model_pct "15.8"; chr11_JH159137v1_alt rmsk exon 155035 155662 1554 + . gene_id "ERVLE_11_JH159137v1_alt"; transcript_id "ERVLE_11_JH159137v1_alt"; locus "ERVLE_11_JH159137v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3900"; repClass "LTR"; repEnd "4339"; repFamily "ERVL"; repLeft "-1328"; repStart "3725"; chr11_JH159137v1_alt rmsk exon 157887 158168 1554 + . gene_id "ERVLE_11_JH159137v1_alt"; transcript_id "ERVLE_11_JH159137v1_alt"; locus "ERVLE_11_JH159137v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3900"; repClass "LTR"; repEnd "4622"; repFamily "ERVL"; repLeft "-1045"; repStart "4340"; ### MER4_11_JH159137v1_alt ### chr11_JH159137v1_alt rmsk gene 182744 190590 . + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; category "prototype"; intModel "MER4-int"; locid "MER4-int_1023"; model_cov "6067"; model_pct "92.0"; chr11_JH159137v1_alt rmsk exon 182744 183340 4191 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_1023"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr11_JH159137v1_alt rmsk exon 183344 183442 657 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "100"; repFamily "ERV1"; repLeft "-6498"; repStart "1"; chr11_JH159137v1_alt rmsk exon 184524 185174 3984 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "34"; chr11_JH159137v1_alt rmsk exon 185187 187092 3962 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "3676"; repFamily "ERV1"; repLeft "-2922"; repStart "923"; chr11_JH159137v1_alt rmsk exon 187090 187571 2642 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "4291"; repFamily "ERV1"; repLeft "-2307"; repStart "3815"; chr11_JH159137v1_alt rmsk exon 187586 188422 12394 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "5352"; repFamily "ERV1"; repLeft "-1246"; repStart "4508"; chr11_JH159137v1_alt rmsk exon 188736 189976 12394 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1023"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "-2"; repStart "5353"; chr11_JH159137v1_alt rmsk exon 189989 190590 3944 + . gene_id "MER4_11_JH159137v1_alt"; transcript_id "MER4_11_JH159137v1_alt"; locus "MER4_11_JH159137v1_alt"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_1023"; repClass "LTR"; repEnd "598"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### ERV316A3_11_KI270826v1_alt ### chr11_KI270826v1_alt rmsk gene 68717 69887 . - . gene_id "ERV316A3_11_KI270826v1_alt"; transcript_id "ERV316A3_11_KI270826v1_alt"; locus "ERV316A3_11_KI270826v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3013"; model_cov "1340"; model_pct "25.6"; chr11_KI270826v1_alt rmsk exon 68717 69359 944 - . gene_id "ERV316A3_11_KI270826v1_alt"; transcript_id "ERV316A3_11_KI270826v1_alt"; locus "ERV316A3_11_KI270826v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3013"; repClass "LTR"; repEnd "4810"; repFamily "ERVL"; repLeft "4106"; repStart "-416"; chr11_KI270826v1_alt rmsk exon 69386 69510 365 - . gene_id "ERV316A3_11_KI270826v1_alt"; transcript_id "ERV316A3_11_KI270826v1_alt"; locus "ERV316A3_11_KI270826v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3013"; repClass "LTR"; repEnd "3821"; repFamily "ERVL"; repLeft "3698"; repStart "-1405"; chr11_KI270826v1_alt rmsk exon 69584 69887 794 - . gene_id "ERV316A3_11_KI270826v1_alt"; transcript_id "ERV316A3_11_KI270826v1_alt"; locus "ERV316A3_11_KI270826v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3013"; repClass "LTR"; repEnd "3580"; repFamily "ERVL"; repLeft "3067"; repStart "-1646"; ### ERVLE_11_KI270829v1_alt ### chr11_KI270829v1_alt rmsk gene 65635 66733 . + . gene_id "ERVLE_11_KI270829v1_alt"; transcript_id "ERVLE_11_KI270829v1_alt"; locus "ERVLE_11_KI270829v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3902"; model_cov "1259"; model_pct "22.2"; chr11_KI270829v1_alt rmsk exon 65635 66733 1095 + . gene_id "ERVLE_11_KI270829v1_alt"; transcript_id "ERVLE_11_KI270829v1_alt"; locus "ERVLE_11_KI270829v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3902"; repClass "LTR"; repEnd "2217"; repFamily "ERVL"; repLeft "-3450"; repStart "958"; ### HML6_11_KI270829v1_alt ### chr11_KI270829v1_alt rmsk gene 130826 137733 . - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; category "prototype"; intModel "HERVK3-int"; locid "HERVK3-int_0145"; model_cov "5398"; model_pct "75.0"; chr11_KI270829v1_alt rmsk exon 130826 131274 2734 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "456"; repFamily "ERVK"; repLeft "1"; repStart "-28"; chr11_KI270829v1_alt rmsk exon 131275 131368 653 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "7202"; repFamily "ERVK"; repLeft "7109"; repStart "0"; chr11_KI270829v1_alt rmsk exon 131394 131733 31774 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "5308"; repFamily "ERVK"; repLeft "4968"; repStart "-1894"; chr11_KI270829v1_alt rmsk exon 132030 132764 31774 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "4967"; repFamily "ERVK"; repLeft "4273"; repStart "-2235"; chr11_KI270829v1_alt rmsk exon 133011 137223 31774 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "4272"; repFamily "ERVK"; repLeft "1"; repStart "-2930"; chr11_KI270829v1_alt rmsk exon 137262 137733 3131 - . gene_id "HML6_11_KI270829v1_alt"; transcript_id "HML6_11_KI270829v1_alt"; locus "HML6_11_KI270829v1_alt"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0145"; repClass "LTR"; repEnd "484"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVH_11_KI270829v1_alt ### chr11_KI270829v1_alt rmsk gene 143652 149408 . - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1342"; model_cov "5059"; model_pct "65.6"; chr11_KI270829v1_alt rmsk exon 143652 144102 3475 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr11_KI270829v1_alt rmsk exon 144103 144475 2411 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr11_KI270829v1_alt rmsk exon 144476 144693 1325 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr11_KI270829v1_alt rmsk exon 144695 145356 4151 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr11_KI270829v1_alt rmsk exon 145359 145859 3084 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "3993"; repFamily "ERV1"; repLeft "3492"; repStart "-3720"; chr11_KI270829v1_alt rmsk exon 145850 148966 18691 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "1"; repStart "-4423"; chr11_KI270829v1_alt rmsk exon 148969 149408 3268 - . gene_id "HERVH_11_KI270829v1_alt"; transcript_id "HERVH_11_KI270829v1_alt"; locus "HERVH_11_KI270829v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1342"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### MER4_11_KI270829v1_alt ### chr11_KI270829v1_alt rmsk gene 199959 202742 . - . gene_id "MER4_11_KI270829v1_alt"; transcript_id "MER4_11_KI270829v1_alt"; locus "MER4_11_KI270829v1_alt"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1024"; model_cov "1475"; model_pct "22.4"; chr11_KI270829v1_alt rmsk exon 199959 200572 3462 - . gene_id "MER4_11_KI270829v1_alt"; transcript_id "MER4_11_KI270829v1_alt"; locus "MER4_11_KI270829v1_alt"; repName "MER4A1_"; geneRegion "ltr"; locid "MER4-int_1024"; repClass "LTR"; repEnd "600"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr11_KI270829v1_alt rmsk exon 200581 201482 7551 - . gene_id "MER4_11_KI270829v1_alt"; transcript_id "MER4_11_KI270829v1_alt"; locus "MER4_11_KI270829v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1024"; repClass "LTR"; repEnd "6596"; repFamily "ERV1"; repLeft "5696"; repStart "-2"; chr11_KI270829v1_alt rmsk exon 202185 202742 7551 - . gene_id "MER4_11_KI270829v1_alt"; transcript_id "MER4_11_KI270829v1_alt"; locus "MER4_11_KI270829v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1024"; repClass "LTR"; repEnd "5695"; repFamily "ERV1"; repLeft "5120"; repStart "-903"; ### ERV316A3_11_KI270903v1_alt ### chr11_KI270903v1_alt rmsk gene 188321 189494 . - . gene_id "ERV316A3_11_KI270903v1_alt"; transcript_id "ERV316A3_11_KI270903v1_alt"; locus "ERV316A3_11_KI270903v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3014"; model_cov "749"; model_pct "14.3"; chr11_KI270903v1_alt rmsk exon 188321 188668 761 - . gene_id "ERV316A3_11_KI270903v1_alt"; transcript_id "ERV316A3_11_KI270903v1_alt"; locus "ERV316A3_11_KI270903v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3014"; repClass "LTR"; repEnd "896"; repFamily "ERVL"; repLeft "532"; repStart "-4330"; chr11_KI270903v1_alt rmsk exon 188696 189067 730 - . gene_id "ERV316A3_11_KI270903v1_alt"; transcript_id "ERV316A3_11_KI270903v1_alt"; locus "ERV316A3_11_KI270903v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3014"; repClass "LTR"; repEnd "480"; repFamily "ERVL"; repLeft "95"; repStart "-4746"; chr11_KI270903v1_alt rmsk exon 189200 189494 614 - . gene_id "ERV316A3_11_KI270903v1_alt"; transcript_id "ERV316A3_11_KI270903v1_alt"; locus "ERV316A3_11_KI270903v1_alt"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3014"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "118"; repStart "-11"; ### ERVLB4_11_KI270927v1_alt ### chr11_KI270927v1_alt rmsk gene 133819 134435 . + . gene_id "ERVLB4_11_KI270927v1_alt"; transcript_id "ERVLB4_11_KI270927v1_alt"; locus "ERVLB4_11_KI270927v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2018"; model_cov "591"; model_pct "10.3"; chr11_KI270927v1_alt rmsk exon 133819 134293 1441 + . gene_id "ERVLB4_11_KI270927v1_alt"; transcript_id "ERVLB4_11_KI270927v1_alt"; locus "ERVLB4_11_KI270927v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2018"; repClass "LTR"; repEnd "1522"; repFamily "ERVL"; repLeft "-4192"; repStart "1021"; chr11_KI270927v1_alt rmsk exon 134345 134435 263 + . gene_id "ERVLB4_11_KI270927v1_alt"; transcript_id "ERVLB4_11_KI270927v1_alt"; locus "ERVLB4_11_KI270927v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2018"; repClass "LTR"; repEnd "2222"; repFamily "ERVL"; repLeft "-3492"; repStart "2132"; ### ERVLE_12_GL383549v1_alt ### chr12_GL383549v1_alt rmsk gene 30412 31430 . + . gene_id "ERVLE_12_GL383549v1_alt"; transcript_id "ERVLE_12_GL383549v1_alt"; locus "ERVLE_12_GL383549v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3903"; model_cov "1024"; model_pct "18.1"; chr12_GL383549v1_alt rmsk exon 30412 31430 4059 + . gene_id "ERVLE_12_GL383549v1_alt"; transcript_id "ERVLE_12_GL383549v1_alt"; locus "ERVLE_12_GL383549v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3903"; repClass "LTR"; repEnd "2780"; repFamily "ERVL"; repLeft "-2887"; repStart "1756"; ### ERVLE_12_GL383550v2_alt ### chr12_GL383550v2_alt rmsk gene 33038 35437 . - . gene_id "ERVLE_12_GL383550v2_alt"; transcript_id "ERVLE_12_GL383550v2_alt"; locus "ERVLE_12_GL383550v2_alt"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3904"; model_cov "1714"; model_pct "30.2"; chr12_GL383550v2_alt rmsk exon 33038 33483 1027 - . gene_id "ERVLE_12_GL383550v2_alt"; transcript_id "ERVLE_12_GL383550v2_alt"; locus "ERVLE_12_GL383550v2_alt"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3904"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "180"; repStart "0"; chr12_GL383550v2_alt rmsk exon 33510 34710 5162 - . gene_id "ERVLE_12_GL383550v2_alt"; transcript_id "ERVLE_12_GL383550v2_alt"; locus "ERVLE_12_GL383550v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3904"; repClass "LTR"; repEnd "4739"; repFamily "ERVL"; repLeft "3518"; repStart "-928"; chr12_GL383550v2_alt rmsk exon 35016 35437 1102 - . gene_id "ERVLE_12_GL383550v2_alt"; transcript_id "ERVLE_12_GL383550v2_alt"; locus "ERVLE_12_GL383550v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3904"; repClass "LTR"; repEnd "3594"; repFamily "ERVL"; repLeft "3101"; repStart "-2073"; ### HERVP71A_12_GL877875v1_alt ### chr12_GL877875v1_alt rmsk gene 101139 106471 . - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; category "oneside"; intModel "HERVP71A-int"; locid "HERVP71A-int_0096"; model_cov "2952"; model_pct "38.9"; chr12_GL877875v1_alt rmsk exon 101139 101412 7046 - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0096"; repClass "LTR"; repEnd "4930"; repFamily "ERV1"; repLeft "4660"; repStart "-2660"; chr12_GL877875v1_alt rmsk exon 101725 102106 7046 - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0096"; repClass "LTR"; repEnd "4659"; repFamily "ERV1"; repLeft "4278"; repStart "-2931"; chr12_GL877875v1_alt rmsk exon 102142 102659 7046 - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0096"; repClass "LTR"; repEnd "4277"; repFamily "ERV1"; repLeft "3755"; repStart "-3313"; chr12_GL877875v1_alt rmsk exon 104176 105848 8268 - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; repName "HERVP71A-int"; geneRegion "internal"; locid "HERVP71A-int_0096"; repClass "LTR"; repEnd "1781"; repFamily "ERV1"; repLeft "2"; repStart "-5809"; chr12_GL877875v1_alt rmsk exon 105849 106471 4322 - . gene_id "HERVP71A_12_GL877875v1_alt"; transcript_id "HERVP71A_12_GL877875v1_alt"; locus "HERVP71A_12_GL877875v1_alt"; repName "LTR71B"; geneRegion "ltr"; locid "HERVP71A-int_0096"; repClass "LTR"; repEnd "610"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLB4_12_GL877876v1_alt(a) ### chr12_GL877876v1_alt rmsk gene 159027 159962 . + . gene_id "ERVLB4_12_GL877876v1_alt(a)"; transcript_id "ERVLB4_12_GL877876v1_alt(a)"; locus "ERVLB4_12_GL877876v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2019"; model_cov "1161"; model_pct "20.3"; chr12_GL877876v1_alt rmsk exon 159027 159962 994 + . gene_id "ERVLB4_12_GL877876v1_alt(a)"; transcript_id "ERVLB4_12_GL877876v1_alt(a)"; locus "ERVLB4_12_GL877876v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2019"; repClass "LTR"; repEnd "3297"; repFamily "ERVL"; repLeft "-2417"; repStart "2136"; ### ERVLE_12_GL877876v1_alt(a) ### chr12_GL877876v1_alt rmsk gene 179773 181943 . + . gene_id "ERVLE_12_GL877876v1_alt(a)"; transcript_id "ERVLE_12_GL877876v1_alt(a)"; locus "ERVLE_12_GL877876v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3906"; model_cov "1496"; model_pct "26.4"; chr12_GL877876v1_alt rmsk exon 179773 180040 341 + . gene_id "ERVLE_12_GL877876v1_alt(a)"; transcript_id "ERVLE_12_GL877876v1_alt(a)"; locus "ERVLE_12_GL877876v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3906"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3714"; repStart "1682"; chr12_GL877876v1_alt rmsk exon 180703 181943 1000 + . gene_id "ERVLE_12_GL877876v1_alt(a)"; transcript_id "ERVLE_12_GL877876v1_alt(a)"; locus "ERVLE_12_GL877876v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3906"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "-2434"; repStart "2008"; ### ERVL_12_GL877876v1_alt ### chr12_GL877876v1_alt rmsk gene 190786 192661 . + . gene_id "ERVL_12_GL877876v1_alt"; transcript_id "ERVL_12_GL877876v1_alt"; locus "ERVL_12_GL877876v1_alt"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0522"; model_cov "1532"; model_pct "26.6"; chr12_GL877876v1_alt rmsk exon 190786 191110 1198 + . gene_id "ERVL_12_GL877876v1_alt"; transcript_id "ERVL_12_GL877876v1_alt"; locus "ERVL_12_GL877876v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0522"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "-3675"; repStart "1762"; chr12_GL877876v1_alt rmsk exon 191419 192661 1198 + . gene_id "ERVL_12_GL877876v1_alt"; transcript_id "ERVL_12_GL877876v1_alt"; locus "ERVL_12_GL877876v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0522"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "-2419"; repStart "2126"; ### HERVL_12_GL877876v1_alt(a) ### chr12_GL877876v1_alt rmsk gene 215407 216831 . + . gene_id "HERVL_12_GL877876v1_alt(a)"; transcript_id "HERVL_12_GL877876v1_alt(a)"; locus "HERVL_12_GL877876v1_alt(a)"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1484"; model_cov "790"; model_pct "14.0"; chr12_GL877876v1_alt rmsk exon 215407 215944 735 + . gene_id "HERVL_12_GL877876v1_alt(a)"; transcript_id "HERVL_12_GL877876v1_alt(a)"; locus "HERVL_12_GL877876v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1484"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3006"; repStart "2082"; chr12_GL877876v1_alt rmsk exon 216535 216623 274 + . gene_id "HERVL_12_GL877876v1_alt(a)"; transcript_id "HERVL_12_GL877876v1_alt(a)"; locus "HERVL_12_GL877876v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1484"; repClass "LTR"; repEnd "2959"; repFamily "ERVL"; repLeft "-2695"; repStart "2871"; chr12_GL877876v1_alt rmsk exon 216694 216831 404 + . gene_id "HERVL_12_GL877876v1_alt(a)"; transcript_id "HERVL_12_GL877876v1_alt(a)"; locus "HERVL_12_GL877876v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1484"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "-2550"; repStart "2968"; ### ERVLB4_12_GL877876v1_alt(b) ### chr12_GL877876v1_alt rmsk gene 225111 226574 . + . gene_id "ERVLB4_12_GL877876v1_alt(b)"; transcript_id "ERVLB4_12_GL877876v1_alt(b)"; locus "ERVLB4_12_GL877876v1_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2020"; model_cov "1197"; model_pct "20.9"; chr12_GL877876v1_alt rmsk exon 225111 225688 1553 + . gene_id "ERVLB4_12_GL877876v1_alt(b)"; transcript_id "ERVLB4_12_GL877876v1_alt(b)"; locus "ERVLB4_12_GL877876v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2020"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-3006"; repStart "2096"; chr12_GL877876v1_alt rmsk exon 225975 226574 1553 + . gene_id "ERVLB4_12_GL877876v1_alt(b)"; transcript_id "ERVLB4_12_GL877876v1_alt(b)"; locus "ERVLB4_12_GL877876v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2020"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-2420"; repStart "2709"; ### ERVLB4_12_GL877876v1_alt(c) ### chr12_GL877876v1_alt rmsk gene 256081 257516 . + . gene_id "ERVLB4_12_GL877876v1_alt(c)"; transcript_id "ERVLB4_12_GL877876v1_alt(c)"; locus "ERVLB4_12_GL877876v1_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2021"; model_cov "1185"; model_pct "20.7"; chr12_GL877876v1_alt rmsk exon 256081 256674 1550 + . gene_id "ERVLB4_12_GL877876v1_alt(c)"; transcript_id "ERVLB4_12_GL877876v1_alt(c)"; locus "ERVLB4_12_GL877876v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2021"; repClass "LTR"; repEnd "2722"; repFamily "ERVL"; repLeft "-2992"; repStart "2096"; chr12_GL877876v1_alt rmsk exon 256945 257516 1550 + . gene_id "ERVLB4_12_GL877876v1_alt(c)"; transcript_id "ERVLB4_12_GL877876v1_alt(c)"; locus "ERVLB4_12_GL877876v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2021"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-2432"; repStart "2723"; ### HERVL_12_GL877876v1_alt(b) ### chr12_GL877876v1_alt rmsk gene 269441 272479 . + . gene_id "HERVL_12_GL877876v1_alt(b)"; transcript_id "HERVL_12_GL877876v1_alt(b)"; locus "HERVL_12_GL877876v1_alt(b)"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1485"; model_cov "901"; model_pct "15.9"; chr12_GL877876v1_alt rmsk exon 269441 269506 289 + . gene_id "HERVL_12_GL877876v1_alt(b)"; transcript_id "HERVL_12_GL877876v1_alt(b)"; locus "HERVL_12_GL877876v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1485"; repClass "LTR"; repEnd "1959"; repFamily "ERVL"; repLeft "-3695"; repStart "1894"; chr12_GL877876v1_alt rmsk exon 271054 271597 601 + . gene_id "HERVL_12_GL877876v1_alt(b)"; transcript_id "HERVL_12_GL877876v1_alt(b)"; locus "HERVL_12_GL877876v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1485"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3006"; repStart "2082"; chr12_GL877876v1_alt rmsk exon 272140 272273 298 + . gene_id "HERVL_12_GL877876v1_alt(b)"; transcript_id "HERVL_12_GL877876v1_alt(b)"; locus "HERVL_12_GL877876v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1485"; repClass "LTR"; repEnd "2961"; repFamily "ERVL"; repLeft "-2693"; repStart "2827"; chr12_GL877876v1_alt rmsk exon 272342 272479 502 + . gene_id "HERVL_12_GL877876v1_alt(b)"; transcript_id "HERVL_12_GL877876v1_alt(b)"; locus "HERVL_12_GL877876v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1485"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "-2550"; repStart "2968"; ### ERVLB4_12_GL877876v1_alt(d) ### chr12_GL877876v1_alt rmsk gene 286178 287652 . + . gene_id "ERVLB4_12_GL877876v1_alt(d)"; transcript_id "ERVLB4_12_GL877876v1_alt(d)"; locus "ERVLB4_12_GL877876v1_alt(d)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2022"; model_cov "1197"; model_pct "20.9"; chr12_GL877876v1_alt rmsk exon 286178 286765 1585 + . gene_id "ERVLB4_12_GL877876v1_alt(d)"; transcript_id "ERVLB4_12_GL877876v1_alt(d)"; locus "ERVLB4_12_GL877876v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2022"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-3006"; repStart "2096"; chr12_GL877876v1_alt rmsk exon 287052 287652 1585 + . gene_id "ERVLB4_12_GL877876v1_alt(d)"; transcript_id "ERVLB4_12_GL877876v1_alt(d)"; locus "ERVLB4_12_GL877876v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2022"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-2420"; repStart "2709"; ### ERVLB4_12_GL877876v1_alt(e) ### chr12_GL877876v1_alt rmsk gene 306434 310276 . + . gene_id "ERVLB4_12_GL877876v1_alt(e)"; transcript_id "ERVLB4_12_GL877876v1_alt(e)"; locus "ERVLB4_12_GL877876v1_alt(e)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2023"; model_cov "808"; model_pct "14.1"; chr12_GL877876v1_alt rmsk exon 306434 306673 296 + . gene_id "ERVLB4_12_GL877876v1_alt(e)"; transcript_id "ERVLB4_12_GL877876v1_alt(e)"; locus "ERVLB4_12_GL877876v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2023"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "-3734"; repStart "1686"; chr12_GL877876v1_alt rmsk exon 309070 309490 687 + . gene_id "ERVLB4_12_GL877876v1_alt(e)"; transcript_id "ERVLB4_12_GL877876v1_alt(e)"; locus "ERVLB4_12_GL877876v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2023"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "-3286"; repStart "2100"; chr12_GL877876v1_alt rmsk exon 309760 309826 370 + . gene_id "ERVLB4_12_GL877876v1_alt(e)"; transcript_id "ERVLB4_12_GL877876v1_alt(e)"; locus "ERVLB4_12_GL877876v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2023"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "-2503"; repStart "3154"; chr12_GL877876v1_alt rmsk exon 310142 310276 370 + . gene_id "ERVLB4_12_GL877876v1_alt(e)"; transcript_id "ERVLB4_12_GL877876v1_alt(e)"; locus "ERVLB4_12_GL877876v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2023"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "-2373"; repStart "3212"; ### HERVL_12_GL877876v1_alt(c) ### chr12_GL877876v1_alt rmsk gene 323881 325191 . + . gene_id "HERVL_12_GL877876v1_alt(c)"; transcript_id "HERVL_12_GL877876v1_alt(c)"; locus "HERVL_12_GL877876v1_alt(c)"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1486"; model_cov "1038"; model_pct "18.4"; chr12_GL877876v1_alt rmsk exon 323881 324470 1491 + . gene_id "HERVL_12_GL877876v1_alt(c)"; transcript_id "HERVL_12_GL877876v1_alt(c)"; locus "HERVL_12_GL877876v1_alt(c)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1486"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "-2939"; repStart "2102"; chr12_GL877876v1_alt rmsk exon 324754 325191 1491 + . gene_id "HERVL_12_GL877876v1_alt(c)"; transcript_id "HERVL_12_GL877876v1_alt(c)"; locus "HERVL_12_GL877876v1_alt(c)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1486"; repClass "LTR"; repEnd "3141"; repFamily "ERVL"; repLeft "-2513"; repStart "2716"; ### ERVLE_12_GL877876v1_alt(b) ### chr12_GL877876v1_alt rmsk gene 359940 361271 . + . gene_id "ERVLE_12_GL877876v1_alt(b)"; transcript_id "ERVLE_12_GL877876v1_alt(b)"; locus "ERVLE_12_GL877876v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3907"; model_cov "1069"; model_pct "18.9"; chr12_GL877876v1_alt rmsk exon 359940 360522 1573 + . gene_id "ERVLE_12_GL877876v1_alt(b)"; transcript_id "ERVLE_12_GL877876v1_alt(b)"; locus "ERVLE_12_GL877876v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3907"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3019"; repStart "2031"; chr12_GL877876v1_alt rmsk exon 360809 361271 1573 + . gene_id "ERVLE_12_GL877876v1_alt(b)"; transcript_id "ERVLE_12_GL877876v1_alt(b)"; locus "ERVLE_12_GL877876v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3907"; repClass "LTR"; repEnd "3101"; repFamily "ERVL"; repLeft "-2566"; repStart "2649"; ### ERVLE_12_GL877876v1_alt(c) ### chr12_GL877876v1_alt rmsk gene 383610 384571 . + . gene_id "ERVLE_12_GL877876v1_alt(c)"; transcript_id "ERVLE_12_GL877876v1_alt(c)"; locus "ERVLE_12_GL877876v1_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3908"; model_cov "1031"; model_pct "18.2"; chr12_GL877876v1_alt rmsk exon 383610 384571 3068 + . gene_id "ERVLE_12_GL877876v1_alt(c)"; transcript_id "ERVLE_12_GL877876v1_alt(c)"; locus "ERVLE_12_GL877876v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3908"; repClass "LTR"; repEnd "1036"; repFamily "ERVL"; repLeft "-4631"; repStart "5"; ### PRIMA4_12_KI270835v1_alt(a) ### chr12_KI270835v1_alt rmsk gene 194030 198109 . - . gene_id "PRIMA4_12_KI270835v1_alt(a)"; transcript_id "PRIMA4_12_KI270835v1_alt(a)"; locus "PRIMA4_12_KI270835v1_alt(a)"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0271"; model_cov "2125"; model_pct "25.7"; chr12_KI270835v1_alt rmsk exon 194030 194147 329 - . gene_id "PRIMA4_12_KI270835v1_alt(a)"; transcript_id "PRIMA4_12_KI270835v1_alt(a)"; locus "PRIMA4_12_KI270835v1_alt(a)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0271"; repClass "LTR"; repEnd "8270"; repFamily "ERV1"; repLeft "8134"; repStart "0"; chr12_KI270835v1_alt rmsk exon 195772 196490 7623 - . gene_id "PRIMA4_12_KI270835v1_alt(a)"; transcript_id "PRIMA4_12_KI270835v1_alt(a)"; locus "PRIMA4_12_KI270835v1_alt(a)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0271"; repClass "LTR"; repEnd "6386"; repFamily "ERV1"; repLeft "5720"; repStart "-1884"; chr12_KI270835v1_alt rmsk exon 196793 197891 7623 - . gene_id "PRIMA4_12_KI270835v1_alt(a)"; transcript_id "PRIMA4_12_KI270835v1_alt(a)"; locus "PRIMA4_12_KI270835v1_alt(a)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0271"; repClass "LTR"; repEnd "5719"; repFamily "ERV1"; repLeft "4560"; repStart "-2551"; chr12_KI270835v1_alt rmsk exon 197948 198109 855 - . gene_id "PRIMA4_12_KI270835v1_alt(a)"; transcript_id "PRIMA4_12_KI270835v1_alt(a)"; locus "PRIMA4_12_KI270835v1_alt(a)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0271"; repClass "LTR"; repEnd "3719"; repFamily "ERV1"; repLeft "3555"; repStart "-4551"; ### PRIMA4_12_KI270835v1_alt(b) ### chr12_KI270835v1_alt rmsk gene 198365 205845 . - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; category "internal"; intModel "PRIMA4-int"; locid "PRIMA4-int_0272"; model_cov "3621"; model_pct "43.8"; chr12_KI270835v1_alt rmsk exon 198365 198764 9993 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "4550"; repFamily "ERV1"; repLeft "4149"; repStart "-3720"; chr12_KI270835v1_alt rmsk exon 199034 199639 9993 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "4148"; repFamily "ERV1"; repLeft "3543"; repStart "-4122"; chr12_KI270835v1_alt rmsk exon 199948 200458 9993 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "3542"; repFamily "ERV1"; repLeft "3020"; repStart "-4728"; chr12_KI270835v1_alt rmsk exon 200761 201664 9993 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "3019"; repFamily "ERV1"; repLeft "2050"; repStart "-5251"; chr12_KI270835v1_alt rmsk exon 201927 202296 9993 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "2049"; repFamily "ERV1"; repLeft "1705"; repStart "-6221"; chr12_KI270835v1_alt rmsk exon 204796 205037 2162 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "1696"; repFamily "ERV1"; repLeft "1433"; repStart "-6574"; chr12_KI270835v1_alt rmsk exon 205334 205845 2162 - . gene_id "PRIMA4_12_KI270835v1_alt(b)"; transcript_id "PRIMA4_12_KI270835v1_alt(b)"; locus "PRIMA4_12_KI270835v1_alt(b)"; repName "PRIMA4-int"; geneRegion "internal"; locid "PRIMA4-int_0272"; repClass "LTR"; repEnd "1432"; repFamily "ERV1"; repLeft "915"; repStart "-6838"; ### ERVLB4_12_KI270904v1_alt(a) ### chr12_KI270904v1_alt rmsk gene 159027 159962 . + . gene_id "ERVLB4_12_KI270904v1_alt(a)"; transcript_id "ERVLB4_12_KI270904v1_alt(a)"; locus "ERVLB4_12_KI270904v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2025"; model_cov "1161"; model_pct "20.3"; chr12_KI270904v1_alt rmsk exon 159027 159962 994 + . gene_id "ERVLB4_12_KI270904v1_alt(a)"; transcript_id "ERVLB4_12_KI270904v1_alt(a)"; locus "ERVLB4_12_KI270904v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2025"; repClass "LTR"; repEnd "3297"; repFamily "ERVL"; repLeft "-2417"; repStart "2136"; ### ERVLE_12_KI270904v1_alt(a) ### chr12_KI270904v1_alt rmsk gene 179764 181929 . + . gene_id "ERVLE_12_KI270904v1_alt(a)"; transcript_id "ERVLE_12_KI270904v1_alt(a)"; locus "ERVLE_12_KI270904v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3911"; model_cov "1496"; model_pct "26.4"; chr12_KI270904v1_alt rmsk exon 179764 180031 341 + . gene_id "ERVLE_12_KI270904v1_alt(a)"; transcript_id "ERVLE_12_KI270904v1_alt(a)"; locus "ERVLE_12_KI270904v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3911"; repClass "LTR"; repEnd "1953"; repFamily "ERVL"; repLeft "-3714"; repStart "1682"; chr12_KI270904v1_alt rmsk exon 180689 181929 985 + . gene_id "ERVLE_12_KI270904v1_alt(a)"; transcript_id "ERVLE_12_KI270904v1_alt(a)"; locus "ERVLE_12_KI270904v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3911"; repClass "LTR"; repEnd "3233"; repFamily "ERVL"; repLeft "-2434"; repStart "2008"; ### ERVL_12_KI270904v1_alt ### chr12_KI270904v1_alt rmsk gene 190773 192648 . + . gene_id "ERVL_12_KI270904v1_alt"; transcript_id "ERVL_12_KI270904v1_alt"; locus "ERVL_12_KI270904v1_alt"; category "internal"; intModel "ERVL-int"; locid "ERVL-int_0523"; model_cov "1532"; model_pct "26.6"; chr12_KI270904v1_alt rmsk exon 190773 191097 1214 + . gene_id "ERVL_12_KI270904v1_alt"; transcript_id "ERVL_12_KI270904v1_alt"; locus "ERVL_12_KI270904v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0523"; repClass "LTR"; repEnd "2082"; repFamily "ERVL"; repLeft "-3675"; repStart "1762"; chr12_KI270904v1_alt rmsk exon 191406 192648 1214 + . gene_id "ERVL_12_KI270904v1_alt"; transcript_id "ERVL_12_KI270904v1_alt"; locus "ERVL_12_KI270904v1_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0523"; repClass "LTR"; repEnd "3338"; repFamily "ERVL"; repLeft "-2419"; repStart "2126"; ### HERVL_12_KI270904v1_alt(a) ### chr12_KI270904v1_alt rmsk gene 215396 216824 . + . gene_id "HERVL_12_KI270904v1_alt(a)"; transcript_id "HERVL_12_KI270904v1_alt(a)"; locus "HERVL_12_KI270904v1_alt(a)"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1487"; model_cov "835"; model_pct "14.8"; chr12_KI270904v1_alt rmsk exon 215396 215933 733 + . gene_id "HERVL_12_KI270904v1_alt(a)"; transcript_id "HERVL_12_KI270904v1_alt(a)"; locus "HERVL_12_KI270904v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1487"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3006"; repStart "2082"; chr12_KI270904v1_alt rmsk exon 216492 216617 362 + . gene_id "HERVL_12_KI270904v1_alt(a)"; transcript_id "HERVL_12_KI270904v1_alt(a)"; locus "HERVL_12_KI270904v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1487"; repClass "LTR"; repEnd "2947"; repFamily "ERVL"; repLeft "-2707"; repStart "2814"; chr12_KI270904v1_alt rmsk exon 216687 216824 404 + . gene_id "HERVL_12_KI270904v1_alt(a)"; transcript_id "HERVL_12_KI270904v1_alt(a)"; locus "HERVL_12_KI270904v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1487"; repClass "LTR"; repEnd "3104"; repFamily "ERVL"; repLeft "-2550"; repStart "2968"; ### ERVLB4_12_KI270904v1_alt(b) ### chr12_KI270904v1_alt rmsk gene 225030 226873 . + . gene_id "ERVLB4_12_KI270904v1_alt(b)"; transcript_id "ERVLB4_12_KI270904v1_alt(b)"; locus "ERVLB4_12_KI270904v1_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2026"; model_cov "1279"; model_pct "22.4"; chr12_KI270904v1_alt rmsk exon 225030 225134 1537 + . gene_id "ERVLB4_12_KI270904v1_alt(b)"; transcript_id "ERVLB4_12_KI270904v1_alt(b)"; locus "ERVLB4_12_KI270904v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2026"; repClass "LTR"; repEnd "2122"; repFamily "ERVL"; repLeft "-3592"; repStart "2013"; chr12_KI270904v1_alt rmsk exon 225433 225987 1537 + . gene_id "ERVLB4_12_KI270904v1_alt(b)"; transcript_id "ERVLB4_12_KI270904v1_alt(b)"; locus "ERVLB4_12_KI270904v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2026"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-3006"; repStart "2123"; chr12_KI270904v1_alt rmsk exon 226274 226873 1537 + . gene_id "ERVLB4_12_KI270904v1_alt(b)"; transcript_id "ERVLB4_12_KI270904v1_alt(b)"; locus "ERVLB4_12_KI270904v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2026"; repClass "LTR"; repEnd "3294"; repFamily "ERVL"; repLeft "-2420"; repStart "2709"; ### ERVLB4_12_KI270904v1_alt(c) ### chr12_KI270904v1_alt rmsk gene 258239 259674 . + . gene_id "ERVLB4_12_KI270904v1_alt(c)"; transcript_id "ERVLB4_12_KI270904v1_alt(c)"; locus "ERVLB4_12_KI270904v1_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2027"; model_cov "1185"; model_pct "20.7"; chr12_KI270904v1_alt rmsk exon 258239 258832 1510 + . gene_id "ERVLB4_12_KI270904v1_alt(c)"; transcript_id "ERVLB4_12_KI270904v1_alt(c)"; locus "ERVLB4_12_KI270904v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2027"; repClass "LTR"; repEnd "2722"; repFamily "ERVL"; repLeft "-2992"; repStart "2096"; chr12_KI270904v1_alt rmsk exon 259103 259674 1510 + . gene_id "ERVLB4_12_KI270904v1_alt(c)"; transcript_id "ERVLB4_12_KI270904v1_alt(c)"; locus "ERVLB4_12_KI270904v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2027"; repClass "LTR"; repEnd "3282"; repFamily "ERVL"; repLeft "-2432"; repStart "2723"; ### ERVLB4_12_KI270904v1_alt(d) ### chr12_KI270904v1_alt rmsk gene 270816 274662 . + . gene_id "ERVLB4_12_KI270904v1_alt(d)"; transcript_id "ERVLB4_12_KI270904v1_alt(d)"; locus "ERVLB4_12_KI270904v1_alt(d)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2028"; model_cov "895"; model_pct "15.7"; chr12_KI270904v1_alt rmsk exon 270816 271055 296 + . gene_id "ERVLB4_12_KI270904v1_alt(d)"; transcript_id "ERVLB4_12_KI270904v1_alt(d)"; locus "ERVLB4_12_KI270904v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2028"; repClass "LTR"; repEnd "1980"; repFamily "ERVL"; repLeft "-3734"; repStart "1686"; chr12_KI270904v1_alt rmsk exon 273378 273872 808 + . gene_id "ERVLB4_12_KI270904v1_alt(d)"; transcript_id "ERVLB4_12_KI270904v1_alt(d)"; locus "ERVLB4_12_KI270904v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2028"; repClass "LTR"; repEnd "2428"; repFamily "ERVL"; repLeft "-3286"; repStart "2013"; chr12_KI270904v1_alt rmsk exon 274142 274208 355 + . gene_id "ERVLB4_12_KI270904v1_alt(d)"; transcript_id "ERVLB4_12_KI270904v1_alt(d)"; locus "ERVLB4_12_KI270904v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2028"; repClass "LTR"; repEnd "3211"; repFamily "ERVL"; repLeft "-2503"; repStart "3154"; chr12_KI270904v1_alt rmsk exon 274528 274662 355 + . gene_id "ERVLB4_12_KI270904v1_alt(d)"; transcript_id "ERVLB4_12_KI270904v1_alt(d)"; locus "ERVLB4_12_KI270904v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2028"; repClass "LTR"; repEnd "3341"; repFamily "ERVL"; repLeft "-2373"; repStart "3212"; ### HERVL_12_KI270904v1_alt(b) ### chr12_KI270904v1_alt rmsk gene 288243 289553 . + . gene_id "HERVL_12_KI270904v1_alt(b)"; transcript_id "HERVL_12_KI270904v1_alt(b)"; locus "HERVL_12_KI270904v1_alt(b)"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1488"; model_cov "1038"; model_pct "18.4"; chr12_KI270904v1_alt rmsk exon 288243 288832 1530 + . gene_id "HERVL_12_KI270904v1_alt(b)"; transcript_id "HERVL_12_KI270904v1_alt(b)"; locus "HERVL_12_KI270904v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1488"; repClass "LTR"; repEnd "2715"; repFamily "ERVL"; repLeft "-2939"; repStart "2102"; chr12_KI270904v1_alt rmsk exon 289116 289553 1530 + . gene_id "HERVL_12_KI270904v1_alt(b)"; transcript_id "HERVL_12_KI270904v1_alt(b)"; locus "HERVL_12_KI270904v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1488"; repClass "LTR"; repEnd "3141"; repFamily "ERVL"; repLeft "-2513"; repStart "2716"; ### ERVLE_12_KI270904v1_alt(b) ### chr12_KI270904v1_alt rmsk gene 324316 325700 . + . gene_id "ERVLE_12_KI270904v1_alt(b)"; transcript_id "ERVLE_12_KI270904v1_alt(b)"; locus "ERVLE_12_KI270904v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3912"; model_cov "1121"; model_pct "19.8"; chr12_KI270904v1_alt rmsk exon 324316 324898 1604 + . gene_id "ERVLE_12_KI270904v1_alt(b)"; transcript_id "ERVLE_12_KI270904v1_alt(b)"; locus "ERVLE_12_KI270904v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3912"; repClass "LTR"; repEnd "2648"; repFamily "ERVL"; repLeft "-3019"; repStart "2031"; chr12_KI270904v1_alt rmsk exon 325185 325700 1604 + . gene_id "ERVLE_12_KI270904v1_alt(b)"; transcript_id "ERVLE_12_KI270904v1_alt(b)"; locus "ERVLE_12_KI270904v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3912"; repClass "LTR"; repEnd "3153"; repFamily "ERVL"; repLeft "-2514"; repStart "2649"; ### ERVLE_12_KI270904v1_alt(c) ### chr12_KI270904v1_alt rmsk gene 347921 348882 . + . gene_id "ERVLE_12_KI270904v1_alt(c)"; transcript_id "ERVLE_12_KI270904v1_alt(c)"; locus "ERVLE_12_KI270904v1_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3913"; model_cov "1031"; model_pct "18.2"; chr12_KI270904v1_alt rmsk exon 347921 348882 3092 + . gene_id "ERVLE_12_KI270904v1_alt(c)"; transcript_id "ERVLE_12_KI270904v1_alt(c)"; locus "ERVLE_12_KI270904v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3913"; repClass "LTR"; repEnd "1036"; repFamily "ERVL"; repLeft "-4631"; repStart "5"; ### HERVL40_12_KI270904v1_alt ### chr12_KI270904v1_alt rmsk gene 565728 567212 . - . gene_id "HERVL40_12_KI270904v1_alt"; transcript_id "HERVL40_12_KI270904v1_alt"; locus "HERVL40_12_KI270904v1_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0510"; model_cov "577"; model_pct "10.4"; chr12_KI270904v1_alt rmsk exon 565728 565803 300 - . gene_id "HERVL40_12_KI270904v1_alt"; transcript_id "HERVL40_12_KI270904v1_alt"; locus "HERVL40_12_KI270904v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0510"; repClass "LTR"; repEnd "2127"; repFamily "ERVL"; repLeft "2051"; repStart "-3403"; chr12_KI270904v1_alt rmsk exon 566637 566971 331 - . gene_id "HERVL40_12_KI270904v1_alt"; transcript_id "HERVL40_12_KI270904v1_alt"; locus "HERVL40_12_KI270904v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0510"; repClass "LTR"; repEnd "1407"; repFamily "ERVL"; repLeft "1066"; repStart "-4123"; chr12_KI270904v1_alt rmsk exon 567054 567212 363 - . gene_id "HERVL40_12_KI270904v1_alt"; transcript_id "HERVL40_12_KI270904v1_alt"; locus "HERVL40_12_KI270904v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0510"; repClass "LTR"; repEnd "269"; repFamily "ERVL"; repLeft "109"; repStart "-5261"; ### ERVLB4_13_KI270838v1_alt ### chr13_KI270838v1_alt rmsk gene 4669 5910 . - . gene_id "ERVLB4_13_KI270838v1_alt"; transcript_id "ERVLB4_13_KI270838v1_alt"; locus "ERVLB4_13_KI270838v1_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2030"; model_cov "977"; model_pct "17.1"; chr13_KI270838v1_alt rmsk exon 4669 4899 229 - . gene_id "ERVLB4_13_KI270838v1_alt"; transcript_id "ERVLB4_13_KI270838v1_alt"; locus "ERVLB4_13_KI270838v1_alt"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_2030"; repClass "LTR"; repEnd "313"; repFamily "ERVL"; repLeft "72"; repStart "-84"; chr13_KI270838v1_alt rmsk exon 4952 5144 444 - . gene_id "ERVLB4_13_KI270838v1_alt"; transcript_id "ERVLB4_13_KI270838v1_alt"; locus "ERVLB4_13_KI270838v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2030"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5507"; repStart "0"; chr13_KI270838v1_alt rmsk exon 5165 5910 4118 - . gene_id "ERVLB4_13_KI270838v1_alt"; transcript_id "ERVLB4_13_KI270838v1_alt"; locus "ERVLB4_13_KI270838v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2030"; repClass "LTR"; repEnd "5003"; repFamily "ERVL"; repLeft "4233"; repStart "-711"; ### HUERSP1_13_KI270838v1_alt ### chr13_KI270838v1_alt rmsk gene 182496 190279 . - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0241"; model_cov "5755"; model_pct "91.9"; chr13_KI270838v1_alt rmsk exon 182496 183179 5074 - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0241"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr13_KI270838v1_alt rmsk exon 183180 183212 257 - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0241"; repClass "LTR"; repEnd "6263"; repFamily "ERV1"; repLeft "6231"; repStart "0"; chr13_KI270838v1_alt rmsk exon 183371 183675 2264 - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0241"; repClass "LTR"; repEnd "6242"; repFamily "ERV1"; repLeft "5935"; repStart "-21"; chr13_KI270838v1_alt rmsk exon 184259 189598 30910 - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0241"; repClass "LTR"; repEnd "5734"; repFamily "ERV1"; repLeft "318"; repStart "-529"; chr13_KI270838v1_alt rmsk exon 189599 190279 5239 - . gene_id "HUERSP1_13_KI270838v1_alt"; transcript_id "HUERSP1_13_KI270838v1_alt"; locus "HUERSP1_13_KI270838v1_alt"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0241"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL_13_KI270841v1_alt ### chr13_KI270841v1_alt rmsk gene 4763 6738 . - . gene_id "HERVL_13_KI270841v1_alt"; transcript_id "HERVL_13_KI270841v1_alt"; locus "HERVL_13_KI270841v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1489"; model_cov "1433"; model_pct "25.3"; chr13_KI270841v1_alt rmsk exon 4763 5308 1781 - . gene_id "HERVL_13_KI270841v1_alt"; transcript_id "HERVL_13_KI270841v1_alt"; locus "HERVL_13_KI270841v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1489"; repClass "LTR"; repEnd "451"; repFamily "ERVL"; repLeft "-100"; repStart "-2"; chr13_KI270841v1_alt rmsk exon 5309 6738 10037 - . gene_id "HERVL_13_KI270841v1_alt"; transcript_id "HERVL_13_KI270841v1_alt"; locus "HERVL_13_KI270841v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1489"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4221"; repStart "0"; ### PABLB_13_KI270841v1_alt ### chr13_KI270841v1_alt rmsk gene 56374 62622 . + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; category "internal"; intModel "PABL_B-int"; locid "PABL_B-int_0114"; model_cov "2692"; model_pct "37.8"; chr13_KI270841v1_alt rmsk exon 56374 56673 1692 + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0114"; repClass "LTR"; repEnd "-695"; repFamily "ERV1"; repLeft "-7817"; repStart "-997"; chr13_KI270841v1_alt rmsk exon 57852 58017 440 + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0114"; repClass "LTR"; repEnd "-468"; repFamily "ERV1"; repLeft "-7590"; repStart "-547"; chr13_KI270841v1_alt rmsk exon 58421 58871 437 + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0114"; repClass "LTR"; repEnd "1396"; repFamily "ERV1"; repLeft "-5726"; repStart "955"; chr13_KI270841v1_alt rmsk exon 60331 62054 1741 + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0114"; repClass "LTR"; repEnd "4254"; repFamily "ERV1"; repLeft "-2868"; repStart "2598"; chr13_KI270841v1_alt rmsk exon 62405 62622 456 + . gene_id "PABLB_13_KI270841v1_alt"; transcript_id "PABLB_13_KI270841v1_alt"; locus "PABLB_13_KI270841v1_alt"; repName "PABL_B-int"; geneRegion "internal"; locid "PABL_B-int_0114"; repClass "LTR"; repEnd "5920"; repFamily "ERV1"; repLeft "-1202"; repStart "5706"; ### HERVL40_13_KI270843v1_alt ### chr13_KI270843v1_alt rmsk gene 22086 26162 . + . gene_id "HERVL40_13_KI270843v1_alt"; transcript_id "HERVL40_13_KI270843v1_alt"; locus "HERVL40_13_KI270843v1_alt"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0511"; model_cov "2046"; model_pct "37.0"; chr13_KI270843v1_alt rmsk exon 22086 22868 1802 + . gene_id "HERVL40_13_KI270843v1_alt"; transcript_id "HERVL40_13_KI270843v1_alt"; locus "HERVL40_13_KI270843v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0511"; repClass "LTR"; repEnd "2460"; repFamily "ERVL"; repLeft "-3070"; repStart "1641"; chr13_KI270843v1_alt rmsk exon 23631 23984 2854 + . gene_id "HERVL40_13_KI270843v1_alt"; transcript_id "HERVL40_13_KI270843v1_alt"; locus "HERVL40_13_KI270843v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0511"; repClass "LTR"; repEnd "2850"; repFamily "ERVL"; repLeft "-2680"; repStart "2481"; chr13_KI270843v1_alt rmsk exon 24677 25324 2854 + . gene_id "HERVL40_13_KI270843v1_alt"; transcript_id "HERVL40_13_KI270843v1_alt"; locus "HERVL40_13_KI270843v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0511"; repClass "LTR"; repEnd "3475"; repFamily "ERVL"; repLeft "-2055"; repStart "2851"; chr13_KI270843v1_alt rmsk exon 25928 26162 769 + . gene_id "HERVL40_13_KI270843v1_alt"; transcript_id "HERVL40_13_KI270843v1_alt"; locus "HERVL40_13_KI270843v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0511"; repClass "LTR"; repEnd "3962"; repFamily "ERVL"; repLeft "-1568"; repStart "3728"; ### MER4_14_KI270844v1_alt(a) ### chr14_KI270844v1_alt rmsk gene 58796 59480 . - . gene_id "MER4_14_KI270844v1_alt(a)"; transcript_id "MER4_14_KI270844v1_alt(a)"; locus "MER4_14_KI270844v1_alt(a)"; category "internal"; intModel "MER4-int"; locid "MER4-int_1027"; model_cov "1134"; model_pct "17.2"; chr14_KI270844v1_alt rmsk exon 58796 59426 5532 - . gene_id "MER4_14_KI270844v1_alt(a)"; transcript_id "MER4_14_KI270844v1_alt(a)"; locus "MER4_14_KI270844v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1027"; repClass "LTR"; repEnd "6493"; repFamily "ERV1"; repLeft "5377"; repStart "-105"; chr14_KI270844v1_alt rmsk exon 59469 59480 11144 - . gene_id "MER4_14_KI270844v1_alt(a)"; transcript_id "MER4_14_KI270844v1_alt(a)"; locus "MER4_14_KI270844v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1027"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "5822"; repStart "-758"; ### MER4_14_KI270844v1_alt(b) ### chr14_KI270844v1_alt rmsk gene 59603 64122 . - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1028"; model_cov "2667"; model_pct "40.4"; chr14_KI270844v1_alt rmsk exon 59603 60348 11144 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1028"; repClass "LTR"; repEnd "5840"; repFamily "ERV1"; repLeft "4566"; repStart "-758"; chr14_KI270844v1_alt rmsk exon 60639 61025 11144 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1028"; repClass "LTR"; repEnd "5084"; repFamily "ERV1"; repLeft "4726"; repStart "-1514"; chr14_KI270844v1_alt rmsk exon 61326 62661 11144 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1028"; repClass "LTR"; repEnd "4725"; repFamily "ERV1"; repLeft "3882"; repStart "-1873"; chr14_KI270844v1_alt rmsk exon 63190 63355 1037 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1028"; repClass "LTR"; repEnd "193"; repFamily "ERV1"; repLeft "1"; repStart "-6405"; chr14_KI270844v1_alt rmsk exon 63359 63414 3142 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1028"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "428"; repStart "0"; chr14_KI270844v1_alt rmsk exon 63701 64122 3142 - . gene_id "MER4_14_KI270844v1_alt(b)"; transcript_id "MER4_14_KI270844v1_alt(b)"; locus "MER4_14_KI270844v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1028"; repClass "LTR"; repEnd "427"; repFamily "ERV1"; repLeft "1"; repStart "-45"; ### LTR57_14_KI270844v1_alt ### chr14_KI270844v1_alt rmsk gene 146053 146965 . + . gene_id "LTR57_14_KI270844v1_alt"; transcript_id "LTR57_14_KI270844v1_alt"; locus "LTR57_14_KI270844v1_alt"; category "internal"; intModel "LTR57-int"; locid "LTR57-int_0218"; model_cov "913"; model_pct "17.1"; chr14_KI270844v1_alt rmsk exon 146053 146965 4643 + . gene_id "LTR57_14_KI270844v1_alt"; transcript_id "LTR57_14_KI270844v1_alt"; locus "LTR57_14_KI270844v1_alt"; repName "LTR57-int"; geneRegion "internal"; locid "LTR57-int_0218"; repClass "LTR"; repEnd "1595"; repFamily "ERVL"; repLeft "-3748"; repStart "682"; ### PRIMA41_14_KI270844v1_alt ### chr14_KI270844v1_alt rmsk gene 147646 150816 . + . gene_id "PRIMA41_14_KI270844v1_alt"; transcript_id "PRIMA41_14_KI270844v1_alt"; locus "PRIMA41_14_KI270844v1_alt"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0191"; model_cov "1554"; model_pct "20.0"; chr14_KI270844v1_alt rmsk exon 147646 147756 371 + . gene_id "PRIMA41_14_KI270844v1_alt"; transcript_id "PRIMA41_14_KI270844v1_alt"; locus "PRIMA41_14_KI270844v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0191"; repClass "LTR"; repEnd "3471"; repFamily "ERV1"; repLeft "-4285"; repStart "3422"; chr14_KI270844v1_alt rmsk exon 149176 149645 453 + . gene_id "PRIMA41_14_KI270844v1_alt"; transcript_id "PRIMA41_14_KI270844v1_alt"; locus "PRIMA41_14_KI270844v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0191"; repClass "LTR"; repEnd "6104"; repFamily "ERV1"; repLeft "-1652"; repStart "5623"; chr14_KI270844v1_alt rmsk exon 149809 150816 2023 + . gene_id "PRIMA41_14_KI270844v1_alt"; transcript_id "PRIMA41_14_KI270844v1_alt"; locus "PRIMA41_14_KI270844v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0191"; repClass "LTR"; repEnd "7341"; repFamily "ERV1"; repLeft "-415"; repStart "6317"; ### ERVLE_14_KI270844v1_alt ### chr14_KI270844v1_alt rmsk gene 212553 213753 . + . gene_id "ERVLE_14_KI270844v1_alt"; transcript_id "ERVLE_14_KI270844v1_alt"; locus "ERVLE_14_KI270844v1_alt"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3917"; model_cov "818"; model_pct "14.4"; chr14_KI270844v1_alt rmsk exon 212553 212654 3430 + . gene_id "ERVLE_14_KI270844v1_alt"; transcript_id "ERVLE_14_KI270844v1_alt"; locus "ERVLE_14_KI270844v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3917"; repClass "LTR"; repEnd "4937"; repFamily "ERVL"; repLeft "-730"; repStart "4848"; chr14_KI270844v1_alt rmsk exon 212945 213607 3430 + . gene_id "ERVLE_14_KI270844v1_alt"; transcript_id "ERVLE_14_KI270844v1_alt"; locus "ERVLE_14_KI270844v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3917"; repClass "LTR"; repEnd "5667"; repFamily "ERVL"; repLeft "0"; repStart "4938"; chr14_KI270844v1_alt rmsk exon 213608 213753 713 + . gene_id "ERVLE_14_KI270844v1_alt"; transcript_id "ERVLE_14_KI270844v1_alt"; locus "ERVLE_14_KI270844v1_alt"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3917"; repClass "LTR"; repEnd "146"; repFamily "ERVL"; repLeft "-517"; repStart "1"; ### ERVLB4_14_KI270845v1_alt ### chr14_KI270845v1_alt rmsk gene 13894 20398 . - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2032"; model_cov "4985"; model_pct "87.2"; chr14_KI270845v1_alt rmsk exon 13894 14295 1317 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "-40"; repStart "-51"; chr14_KI270845v1_alt rmsk exon 14301 15067 4402 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "4922"; repStart "0"; chr14_KI270845v1_alt rmsk exon 15373 15477 4402 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "4921"; repFamily "ERVL"; repLeft "4811"; repStart "-793"; chr14_KI270845v1_alt rmsk exon 15472 16659 5886 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "4731"; repFamily "ERVL"; repLeft "3454"; repStart "-983"; chr14_KI270845v1_alt rmsk exon 16655 17209 15365 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "2809"; repFamily "ERVL"; repLeft "2256"; repStart "-2905"; chr14_KI270845v1_alt rmsk exon 17517 18084 15365 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "2255"; repFamily "ERVL"; repLeft "1700"; repStart "-3459"; chr14_KI270845v1_alt rmsk exon 18241 19916 15365 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "1699"; repFamily "ERVL"; repLeft "1"; repStart "-4015"; chr14_KI270845v1_alt rmsk exon 19917 20398 2363 - . gene_id "ERVLB4_14_KI270845v1_alt"; transcript_id "ERVLB4_14_KI270845v1_alt"; locus "ERVLB4_14_KI270845v1_alt"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_2032"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLE_14_KI270845v1_alt(a) ### chr14_KI270845v1_alt rmsk gene 77877 79857 . + . gene_id "ERVLE_14_KI270845v1_alt(a)"; transcript_id "ERVLE_14_KI270845v1_alt(a)"; locus "ERVLE_14_KI270845v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3918"; model_cov "2114"; model_pct "37.3"; chr14_KI270845v1_alt rmsk exon 77877 78790 1070 + . gene_id "ERVLE_14_KI270845v1_alt(a)"; transcript_id "ERVLE_14_KI270845v1_alt(a)"; locus "ERVLE_14_KI270845v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3918"; repClass "LTR"; repEnd "1722"; repFamily "ERVL"; repLeft "-3945"; repStart "697"; chr14_KI270845v1_alt rmsk exon 78812 79857 3338 + . gene_id "ERVLE_14_KI270845v1_alt(a)"; transcript_id "ERVLE_14_KI270845v1_alt(a)"; locus "ERVLE_14_KI270845v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3918"; repClass "LTR"; repEnd "2866"; repFamily "ERVL"; repLeft "-2801"; repStart "1777"; ### ERVLE_14_KI270845v1_alt(b) ### chr14_KI270845v1_alt rmsk gene 115985 116406 . + . gene_id "ERVLE_14_KI270845v1_alt(b)"; transcript_id "ERVLE_14_KI270845v1_alt(b)"; locus "ERVLE_14_KI270845v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3919"; model_cov "621"; model_pct "11.0"; chr14_KI270845v1_alt rmsk exon 115985 116406 605 + . gene_id "ERVLE_14_KI270845v1_alt(b)"; transcript_id "ERVLE_14_KI270845v1_alt(b)"; locus "ERVLE_14_KI270845v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3919"; repClass "LTR"; repEnd "4713"; repFamily "ERVL"; repLeft "-954"; repStart "4092"; ### ERV316A3_14_KI270845v1_alt ### chr14_KI270845v1_alt rmsk gene 166464 167758 . - . gene_id "ERV316A3_14_KI270845v1_alt"; transcript_id "ERV316A3_14_KI270845v1_alt"; locus "ERV316A3_14_KI270845v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3016"; model_cov "595"; model_pct "11.4"; chr14_KI270845v1_alt rmsk exon 166464 166818 481 - . gene_id "ERV316A3_14_KI270845v1_alt"; transcript_id "ERV316A3_14_KI270845v1_alt"; locus "ERV316A3_14_KI270845v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3016"; repClass "LTR"; repEnd "1660"; repFamily "ERVL"; repLeft "1311"; repStart "-3566"; chr14_KI270845v1_alt rmsk exon 167520 167758 320 - . gene_id "ERV316A3_14_KI270845v1_alt"; transcript_id "ERV316A3_14_KI270845v1_alt"; locus "ERV316A3_14_KI270845v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3016"; repClass "LTR"; repEnd "1047"; repFamily "ERVL"; repLeft "801"; repStart "-4179"; ### HML2_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 141082 143972 . + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0138"; model_cov "1886"; model_pct "25.0"; chr14_KI270846v1_alt rmsk exon 141082 142770 11016 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766"; chr14_KI270846v1_alt rmsk exon 142776 142875 414 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587"; chr14_KI270846v1_alt rmsk exon 142874 142965 575 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441"; chr14_KI270846v1_alt rmsk exon 142969 143972 8253 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 432955 434749 . + . gene_id "HERVL_14_KI270846v1_alt(a)"; transcript_id "HERVL_14_KI270846v1_alt(a)"; locus "HERVL_14_KI270846v1_alt(a)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1490"; model_cov "1396"; model_pct "24.7"; chr14_KI270846v1_alt rmsk exon 432955 434332 10329 + . gene_id "HERVL_14_KI270846v1_alt(a)"; transcript_id "HERVL_14_KI270846v1_alt(a)"; locus "HERVL_14_KI270846v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1490"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "4258"; chr14_KI270846v1_alt rmsk exon 434333 434749 3056 + . gene_id "HERVL_14_KI270846v1_alt(a)"; transcript_id "HERVL_14_KI270846v1_alt(a)"; locus "HERVL_14_KI270846v1_alt(a)"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1490"; repClass "LTR"; repEnd "401"; repFamily "ERVL"; repLeft "-52"; repStart "-101"; ### HERVL32_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 449711 451436 . - . gene_id "HERVL32_14_KI270846v1_alt(a)"; transcript_id "HERVL32_14_KI270846v1_alt(a)"; locus "HERVL32_14_KI270846v1_alt(a)"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0061"; model_cov "1735"; model_pct "50.8"; chr14_KI270846v1_alt rmsk exon 449711 450746 3150 - . gene_id "HERVL32_14_KI270846v1_alt(a)"; transcript_id "HERVL32_14_KI270846v1_alt(a)"; locus "HERVL32_14_KI270846v1_alt(a)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0061"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1643"; repStart "-738"; chr14_KI270846v1_alt rmsk exon 450771 451436 1156 - . gene_id "HERVL32_14_KI270846v1_alt(a)"; transcript_id "HERVL32_14_KI270846v1_alt(a)"; locus "HERVL32_14_KI270846v1_alt(a)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0061"; repClass "LTR"; repEnd "1310"; repFamily "ERVL"; repLeft "612"; repStart "-2108"; ### HERVL32_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 451698 453105 . - . gene_id "HERVL32_14_KI270846v1_alt(b)"; transcript_id "HERVL32_14_KI270846v1_alt(b)"; locus "HERVL32_14_KI270846v1_alt(b)"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0062"; model_cov "975"; model_pct "28.5"; chr14_KI270846v1_alt rmsk exon 451698 452114 1649 - . gene_id "HERVL32_14_KI270846v1_alt(b)"; transcript_id "HERVL32_14_KI270846v1_alt(b)"; locus "HERVL32_14_KI270846v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0062"; repClass "LTR"; repEnd "2856"; repFamily "ERVL"; repLeft "2452"; repStart "-562"; chr14_KI270846v1_alt rmsk exon 452124 452657 990 - . gene_id "HERVL32_14_KI270846v1_alt(b)"; transcript_id "HERVL32_14_KI270846v1_alt(b)"; locus "HERVL32_14_KI270846v1_alt(b)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0062"; repClass "LTR"; repEnd "590"; repFamily "ERVL"; repLeft "19"; repStart "-2828"; chr14_KI270846v1_alt rmsk exon 452676 453105 1891 - . gene_id "HERVL32_14_KI270846v1_alt(b)"; transcript_id "HERVL32_14_KI270846v1_alt(b)"; locus "HERVL32_14_KI270846v1_alt(b)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0062"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HUERSP1_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 520096 521352 . - . gene_id "HUERSP1_14_KI270846v1_alt"; transcript_id "HUERSP1_14_KI270846v1_alt"; locus "HUERSP1_14_KI270846v1_alt"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0242"; model_cov "1237"; model_pct "19.8"; chr14_KI270846v1_alt rmsk exon 520096 521175 5567 - . gene_id "HUERSP1_14_KI270846v1_alt"; transcript_id "HUERSP1_14_KI270846v1_alt"; locus "HUERSP1_14_KI270846v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0242"; repClass "LTR"; repEnd "6226"; repFamily "ERV1"; repLeft "5130"; repStart "-37"; chr14_KI270846v1_alt rmsk exon 521210 521352 642 - . gene_id "HUERSP1_14_KI270846v1_alt"; transcript_id "HUERSP1_14_KI270846v1_alt"; locus "HUERSP1_14_KI270846v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0242"; repClass "LTR"; repEnd "4749"; repFamily "ERV1"; repLeft "4608"; repStart "-1514"; ### HERVL_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 564069 565644 . - . gene_id "HERVL_14_KI270846v1_alt(b)"; transcript_id "HERVL_14_KI270846v1_alt(b)"; locus "HERVL_14_KI270846v1_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1491"; model_cov "654"; model_pct "11.6"; chr14_KI270846v1_alt rmsk exon 564069 564649 1606 - . gene_id "HERVL_14_KI270846v1_alt(b)"; transcript_id "HERVL_14_KI270846v1_alt(b)"; locus "HERVL_14_KI270846v1_alt(b)"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1491"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "3"; repStart "0"; chr14_KI270846v1_alt rmsk exon 564652 564903 3372 - . gene_id "HERVL_14_KI270846v1_alt(b)"; transcript_id "HERVL_14_KI270846v1_alt(b)"; locus "HERVL_14_KI270846v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1491"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "5421"; repStart "0"; chr14_KI270846v1_alt rmsk exon 565213 565644 3372 - . gene_id "HERVL_14_KI270846v1_alt(b)"; transcript_id "HERVL_14_KI270846v1_alt(b)"; locus "HERVL_14_KI270846v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1491"; repClass "LTR"; repEnd "5420"; repFamily "ERVL"; repLeft "4999"; repStart "-234"; ### MER4B_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 576818 578142 . - . gene_id "MER4B_14_KI270846v1_alt(a)"; transcript_id "MER4B_14_KI270846v1_alt(a)"; locus "MER4B_14_KI270846v1_alt(a)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0601"; model_cov "1237"; model_pct "18.3"; chr14_KI270846v1_alt rmsk exon 576818 577185 329 - . gene_id "MER4B_14_KI270846v1_alt(a)"; transcript_id "MER4B_14_KI270846v1_alt(a)"; locus "MER4B_14_KI270846v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0601"; repClass "LTR"; repEnd "4317"; repFamily "ERV1"; repLeft "3950"; repStart "-2441"; chr14_KI270846v1_alt rmsk exon 577303 578142 784 - . gene_id "MER4B_14_KI270846v1_alt(a)"; transcript_id "MER4B_14_KI270846v1_alt(a)"; locus "MER4B_14_KI270846v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0601"; repClass "LTR"; repEnd "3964"; repFamily "ERV1"; repLeft "3094"; repStart "-2794"; ### MER4_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 603251 608273 . - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1029"; model_cov "5511"; model_pct "83.5"; chr14_KI270846v1_alt rmsk exon 603251 603313 1448 - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_1029"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "193"; repStart "-409"; chr14_KI270846v1_alt rmsk exon 603315 603356 9098 - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1029"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "6287"; repStart "-270"; chr14_KI270846v1_alt rmsk exon 603725 605979 9098 - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1029"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "4066"; repStart "-312"; chr14_KI270846v1_alt rmsk exon 606257 607276 9098 - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1029"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "2037"; repStart "-2533"; chr14_KI270846v1_alt rmsk exon 607356 608273 1603 - . gene_id "MER4_14_KI270846v1_alt(a)"; transcript_id "MER4_14_KI270846v1_alt(a)"; locus "MER4_14_KI270846v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1029"; repClass "LTR"; repEnd "1856"; repFamily "ERV1"; repLeft "634"; repStart "-4742"; ### HERVS71_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 664760 675241 . - . gene_id "HERVS71_14_KI270846v1_alt"; transcript_id "HERVS71_14_KI270846v1_alt"; locus "HERVS71_14_KI270846v1_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0072"; model_cov "8974"; model_pct "100.0"; chr14_KI270846v1_alt rmsk exon 664760 665340 2046 - . gene_id "HERVS71_14_KI270846v1_alt"; transcript_id "HERVS71_14_KI270846v1_alt"; locus "HERVS71_14_KI270846v1_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0072"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "7"; repStart "0"; chr14_KI270846v1_alt rmsk exon 665341 674588 67093 - . gene_id "HERVS71_14_KI270846v1_alt"; transcript_id "HERVS71_14_KI270846v1_alt"; locus "HERVS71_14_KI270846v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0072"; repClass "LTR"; repEnd "8978"; repFamily "ERV1"; repLeft "4"; repStart "0"; chr14_KI270846v1_alt rmsk exon 674593 675241 2254 - . gene_id "HERVS71_14_KI270846v1_alt"; transcript_id "HERVS71_14_KI270846v1_alt"; locus "HERVS71_14_KI270846v1_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0072"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### PRIMA41_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 896097 897187 . - . gene_id "PRIMA41_14_KI270846v1_alt(a)"; transcript_id "PRIMA41_14_KI270846v1_alt(a)"; locus "PRIMA41_14_KI270846v1_alt(a)"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0192"; model_cov "971"; model_pct "12.5"; chr14_KI270846v1_alt rmsk exon 896097 896924 1396 - . gene_id "PRIMA41_14_KI270846v1_alt(a)"; transcript_id "PRIMA41_14_KI270846v1_alt(a)"; locus "PRIMA41_14_KI270846v1_alt(a)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0192"; repClass "LTR"; repEnd "7506"; repFamily "ERV1"; repLeft "6660"; repStart "-250"; chr14_KI270846v1_alt rmsk exon 897061 897187 289 - . gene_id "PRIMA41_14_KI270846v1_alt(a)"; transcript_id "PRIMA41_14_KI270846v1_alt(a)"; locus "PRIMA41_14_KI270846v1_alt(a)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0192"; repClass "LTR"; repEnd "6454"; repFamily "ERV1"; repLeft "6329"; repStart "-1302"; ### MER4_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 903102 908530 . - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1030"; model_cov "5329"; model_pct "80.8"; chr14_KI270846v1_alt rmsk exon 903102 903164 419 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1030"; repClass "LTR"; repEnd "63"; repFamily "ERV1"; repLeft "1"; repStart "-409"; chr14_KI270846v1_alt rmsk exon 903165 903209 10912 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1030"; repClass "LTR"; repEnd "6329"; repFamily "ERV1"; repLeft "6286"; repStart "-269"; chr14_KI270846v1_alt rmsk exon 903561 905778 10912 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1030"; repClass "LTR"; repEnd "6285"; repFamily "ERV1"; repLeft "4069"; repStart "-313"; chr14_KI270846v1_alt rmsk exon 906058 907523 10912 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1030"; repClass "LTR"; repEnd "4068"; repFamily "ERV1"; repLeft "1556"; repStart "-2530"; chr14_KI270846v1_alt rmsk exon 907825 908095 3112 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1030"; repClass "LTR"; repEnd "1395"; repFamily "ERV1"; repLeft "1053"; repStart "-5203"; chr14_KI270846v1_alt rmsk exon 908135 908530 3112 - . gene_id "MER4_14_KI270846v1_alt(b)"; transcript_id "MER4_14_KI270846v1_alt(b)"; locus "MER4_14_KI270846v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1030"; repClass "LTR"; repEnd "1052"; repFamily "ERV1"; repLeft "836"; repStart "-5546"; ### MER4B_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 957168 957893 . - . gene_id "MER4B_14_KI270846v1_alt(b)"; transcript_id "MER4B_14_KI270846v1_alt(b)"; locus "MER4B_14_KI270846v1_alt(b)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0603"; model_cov "727"; model_pct "10.8"; chr14_KI270846v1_alt rmsk exon 957168 957893 854 - . gene_id "MER4B_14_KI270846v1_alt(b)"; transcript_id "MER4B_14_KI270846v1_alt(b)"; locus "MER4B_14_KI270846v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0603"; repClass "LTR"; repEnd "3929"; repFamily "ERV1"; repLeft "3202"; repStart "-2829"; ### PRIMA41_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 977047 979733 . - . gene_id "PRIMA41_14_KI270846v1_alt(b)"; transcript_id "PRIMA41_14_KI270846v1_alt(b)"; locus "PRIMA41_14_KI270846v1_alt(b)"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0193"; model_cov "1638"; model_pct "21.1"; chr14_KI270846v1_alt rmsk exon 977047 977939 1665 - . gene_id "PRIMA41_14_KI270846v1_alt(b)"; transcript_id "PRIMA41_14_KI270846v1_alt(b)"; locus "PRIMA41_14_KI270846v1_alt(b)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0193"; repClass "LTR"; repEnd "7506"; repFamily "ERV1"; repLeft "6609"; repStart "-250"; chr14_KI270846v1_alt rmsk exon 978002 978136 271 - . gene_id "PRIMA41_14_KI270846v1_alt(b)"; transcript_id "PRIMA41_14_KI270846v1_alt(b)"; locus "PRIMA41_14_KI270846v1_alt(b)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0193"; repClass "LTR"; repEnd "6460"; repFamily "ERV1"; repLeft "6329"; repStart "-1296"; chr14_KI270846v1_alt rmsk exon 978627 979084 859 - . gene_id "PRIMA41_14_KI270846v1_alt(b)"; transcript_id "PRIMA41_14_KI270846v1_alt(b)"; locus "PRIMA41_14_KI270846v1_alt(b)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0193"; repClass "LTR"; repEnd "5792"; repFamily "ERV1"; repLeft "5330"; repStart "-1964"; chr14_KI270846v1_alt rmsk exon 979569 979733 305 - . gene_id "PRIMA41_14_KI270846v1_alt(b)"; transcript_id "PRIMA41_14_KI270846v1_alt(b)"; locus "PRIMA41_14_KI270846v1_alt(b)"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0193"; repClass "LTR"; repEnd "4839"; repFamily "ERV1"; repLeft "4691"; repStart "-2917"; ### MER4_14_KI270846v1_alt(c) ### chr14_KI270846v1_alt rmsk gene 1014472 1021301 . - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; category "unknown"; intModel "MER4-int"; locid "MER4-int_1032"; model_cov "4926"; model_pct "74.7"; chr14_KI270846v1_alt rmsk exon 1014472 1014902 1363 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4C"; geneRegion "ltr"; locid "MER4-int_1032"; repClass "LTR"; repEnd "461"; repFamily "ERV1"; repLeft "1"; repStart "-4"; chr14_KI270846v1_alt rmsk exon 1014916 1015061 389 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1032"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "6456"; repStart "-5"; chr14_KI270846v1_alt rmsk exon 1015232 1015280 2073 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_1032"; repClass "LTR"; repEnd "654"; repFamily "ERV1"; repLeft "621"; repStart "-10"; chr14_KI270846v1_alt rmsk exon 1015633 1016034 2073 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_1032"; repClass "LTR"; repEnd "620"; repFamily "ERV1"; repLeft "59"; repStart "-44"; chr14_KI270846v1_alt rmsk exon 1016802 1016864 1536 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_1032"; repClass "LTR"; repEnd "250"; repFamily "ERV1"; repLeft "193"; repStart "-414"; chr14_KI270846v1_alt rmsk exon 1016865 1016908 8939 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1032"; repClass "LTR"; repEnd "6329"; repFamily "ERV1"; repLeft "6286"; repStart "-269"; chr14_KI270846v1_alt rmsk exon 1017275 1019487 8939 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1032"; repClass "LTR"; repEnd "6285"; repFamily "ERV1"; repLeft "4069"; repStart "-313"; chr14_KI270846v1_alt rmsk exon 1019770 1021301 8939 - . gene_id "MER4_14_KI270846v1_alt(c)"; transcript_id "MER4_14_KI270846v1_alt(c)"; locus "MER4_14_KI270846v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1032"; repClass "LTR"; repEnd "4068"; repFamily "ERV1"; repLeft "1538"; repStart "-2530"; ### ERVLB4_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 1059078 1060234 . - . gene_id "ERVLB4_14_KI270846v1_alt"; transcript_id "ERVLB4_14_KI270846v1_alt"; locus "ERVLB4_14_KI270846v1_alt"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2033"; model_cov "655"; model_pct "11.5"; chr14_KI270846v1_alt rmsk exon 1059078 1059203 668 - . gene_id "ERVLB4_14_KI270846v1_alt"; transcript_id "ERVLB4_14_KI270846v1_alt"; locus "ERVLB4_14_KI270846v1_alt"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_2033"; repClass "LTR"; repEnd "128"; repFamily "ERVL"; repLeft "3"; repStart "-426"; chr14_KI270846v1_alt rmsk exon 1059206 1059461 1491 - . gene_id "ERVLB4_14_KI270846v1_alt"; transcript_id "ERVLB4_14_KI270846v1_alt"; locus "ERVLB4_14_KI270846v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2033"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "5483"; repStart "0"; chr14_KI270846v1_alt rmsk exon 1059774 1059843 1491 - . gene_id "ERVLB4_14_KI270846v1_alt"; transcript_id "ERVLB4_14_KI270846v1_alt"; locus "ERVLB4_14_KI270846v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2033"; repClass "LTR"; repEnd "5482"; repFamily "ERVL"; repLeft "5415"; repStart "-232"; chr14_KI270846v1_alt rmsk exon 1059887 1060234 2053 - . gene_id "ERVLB4_14_KI270846v1_alt"; transcript_id "ERVLB4_14_KI270846v1_alt"; locus "ERVLB4_14_KI270846v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2033"; repClass "LTR"; repEnd "5347"; repFamily "ERVL"; repLeft "4990"; repStart "-367"; ### MER4B_14_KI270846v1_alt(c) ### chr14_KI270846v1_alt rmsk gene 1071794 1072458 . - . gene_id "MER4B_14_KI270846v1_alt(c)"; transcript_id "MER4B_14_KI270846v1_alt(c)"; locus "MER4B_14_KI270846v1_alt(c)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0606"; model_cov "696"; model_pct "10.3"; chr14_KI270846v1_alt rmsk exon 1071794 1072458 684 - . gene_id "MER4B_14_KI270846v1_alt(c)"; transcript_id "MER4B_14_KI270846v1_alt(c)"; locus "MER4B_14_KI270846v1_alt(c)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0606"; repClass "LTR"; repEnd "3786"; repFamily "ERV1"; repLeft "3090"; repStart "-2972"; ### LTR25_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 1086290 1087156 . + . gene_id "LTR25_14_KI270846v1_alt(a)"; transcript_id "LTR25_14_KI270846v1_alt(a)"; locus "LTR25_14_KI270846v1_alt(a)"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0249"; model_cov "716"; model_pct "10.0"; chr14_KI270846v1_alt rmsk exon 1086290 1086480 1014 + . gene_id "LTR25_14_KI270846v1_alt(a)"; transcript_id "LTR25_14_KI270846v1_alt(a)"; locus "LTR25_14_KI270846v1_alt(a)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0249"; repClass "LTR"; repEnd "5677"; repFamily "ERV1"; repLeft "-1511"; repStart "5489"; chr14_KI270846v1_alt rmsk exon 1086588 1087156 2446 + . gene_id "LTR25_14_KI270846v1_alt(a)"; transcript_id "LTR25_14_KI270846v1_alt(a)"; locus "LTR25_14_KI270846v1_alt(a)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0249"; repClass "LTR"; repEnd "7129"; repFamily "ERV1"; repLeft "-59"; repStart "6601"; ### LTR25_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 1137066 1137845 . + . gene_id "LTR25_14_KI270846v1_alt(b)"; transcript_id "LTR25_14_KI270846v1_alt(b)"; locus "LTR25_14_KI270846v1_alt(b)"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0250"; model_cov "738"; model_pct "10.3"; chr14_KI270846v1_alt rmsk exon 1137066 1137845 3145 + . gene_id "LTR25_14_KI270846v1_alt(b)"; transcript_id "LTR25_14_KI270846v1_alt(b)"; locus "LTR25_14_KI270846v1_alt(b)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0250"; repClass "LTR"; repEnd "7165"; repFamily "ERV1"; repLeft "-23"; repStart "6427"; ### HML5_14_KI270846v1_alt(a) ### chr14_KI270846v1_alt rmsk gene 1189673 1194804 . + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0189"; model_cov "5765"; model_pct "84.3"; chr14_KI270846v1_alt rmsk exon 1189673 1189891 1450 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "233"; repFamily "ERVK"; repLeft "-259"; repStart "5"; chr14_KI270846v1_alt rmsk exon 1189891 1190015 617 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "-4"; repStart "287"; chr14_KI270846v1_alt rmsk exon 1190016 1190662 3991 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "28"; chr14_KI270846v1_alt rmsk exon 1190943 1191082 787 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "-4364"; repStart "2327"; chr14_KI270846v1_alt rmsk exon 1191078 1191160 552 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "-3930"; repStart "2825"; chr14_KI270846v1_alt rmsk exon 1191153 1191205 351 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4292"; repStart "2493"; chr14_KI270846v1_alt rmsk exon 1191205 1194337 20057 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2019"; chr14_KI270846v1_alt rmsk exon 1194338 1194804 2999 + . gene_id "HML5_14_KI270846v1_alt(a)"; transcript_id "HML5_14_KI270846v1_alt(a)"; locus "HML5_14_KI270846v1_alt(a)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0189"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML5_14_KI270846v1_alt(b) ### chr14_KI270846v1_alt rmsk gene 1236144 1241250 . + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; category "prototype"; intModel "HERVK22-int"; locid "HERVK22-int_0190"; model_cov "5757"; model_pct "84.2"; chr14_KI270846v1_alt rmsk exon 1236144 1236362 1488 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "233"; repFamily "ERVK"; repLeft "-259"; repStart "5"; chr14_KI270846v1_alt rmsk exon 1236362 1236486 622 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "488"; repFamily "ERVK"; repLeft "-4"; repStart "287"; chr14_KI270846v1_alt rmsk exon 1236487 1237133 4022 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "695"; repFamily "ERVK"; repLeft "-6142"; repStart "28"; chr14_KI270846v1_alt rmsk exon 1237415 1237558 832 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "2473"; repFamily "ERVK"; repLeft "-4364"; repStart "2327"; chr14_KI270846v1_alt rmsk exon 1237554 1237636 543 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "2907"; repFamily "ERVK"; repLeft "-3930"; repStart "2825"; chr14_KI270846v1_alt rmsk exon 1237629 1237681 331 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "2545"; repFamily "ERVK"; repLeft "-4292"; repStart "2493"; chr14_KI270846v1_alt rmsk exon 1237681 1240783 20668 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "HERVK22-int"; geneRegion "internal"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "6837"; repFamily "ERVK"; repLeft "0"; repStart "2027"; chr14_KI270846v1_alt rmsk exon 1240784 1241250 2844 + . gene_id "HML5_14_KI270846v1_alt(b)"; transcript_id "HML5_14_KI270846v1_alt(b)"; locus "HML5_14_KI270846v1_alt(b)"; repName "LTR22B"; geneRegion "ltr"; locid "HERVK22-int_0190"; repClass "LTR"; repEnd "492"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HERVL32_14_KI270846v1_alt(c) ### chr14_KI270846v1_alt rmsk gene 1283259 1284587 . - . gene_id "HERVL32_14_KI270846v1_alt(c)"; transcript_id "HERVL32_14_KI270846v1_alt(c)"; locus "HERVL32_14_KI270846v1_alt(c)"; category "oneside"; intModel "HERVL32-int"; locid "HERVL32-int_0063"; model_cov "935"; model_pct "27.4"; chr14_KI270846v1_alt rmsk exon 1283259 1284207 3147 - . gene_id "HERVL32_14_KI270846v1_alt(c)"; transcript_id "HERVL32_14_KI270846v1_alt(c)"; locus "HERVL32_14_KI270846v1_alt(c)"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0063"; repClass "LTR"; repEnd "961"; repFamily "ERVL"; repLeft "26"; repStart "-2457"; chr14_KI270846v1_alt rmsk exon 1284234 1284587 1544 - . gene_id "HERVL32_14_KI270846v1_alt(c)"; transcript_id "HERVL32_14_KI270846v1_alt(c)"; locus "HERVL32_14_KI270846v1_alt(c)"; repName "LTR32"; geneRegion "ltr"; locid "HERVL32-int_0063"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "74"; repStart "0"; ### HERVL_14_KI270846v1_alt(c) ### chr14_KI270846v1_alt rmsk gene 1323988 1325247 . - . gene_id "HERVL_14_KI270846v1_alt(c)"; transcript_id "HERVL_14_KI270846v1_alt(c)"; locus "HERVL_14_KI270846v1_alt(c)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1494"; model_cov "648"; model_pct "11.5"; chr14_KI270846v1_alt rmsk exon 1323988 1324579 1414 - . gene_id "HERVL_14_KI270846v1_alt(c)"; transcript_id "HERVL_14_KI270846v1_alt(c)"; locus "HERVL_14_KI270846v1_alt(c)"; repName "MLT2B3"; geneRegion "ltr"; locid "HERVL-int_1494"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr14_KI270846v1_alt rmsk exon 1324593 1325247 3505 - . gene_id "HERVL_14_KI270846v1_alt(c)"; transcript_id "HERVL_14_KI270846v1_alt(c)"; locus "HERVL_14_KI270846v1_alt(c)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1494"; repClass "LTR"; repEnd "5644"; repFamily "ERVL"; repLeft "4996"; repStart "-10"; ### HERV3_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 1327235 1337155 . - . gene_id "HERV3_14_KI270846v1_alt"; transcript_id "HERV3_14_KI270846v1_alt"; locus "HERV3_14_KI270846v1_alt"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0111"; model_cov "8422"; model_pct "100.0"; chr14_KI270846v1_alt rmsk exon 1327235 1327925 1534 - . gene_id "HERV3_14_KI270846v1_alt"; transcript_id "HERV3_14_KI270846v1_alt"; locus "HERV3_14_KI270846v1_alt"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0111"; repClass "LTR"; repEnd "675"; repFamily "ERV1"; repLeft "10"; repStart "0"; chr14_KI270846v1_alt rmsk exon 1327950 1336467 45589 - . gene_id "HERV3_14_KI270846v1_alt"; transcript_id "HERV3_14_KI270846v1_alt"; locus "HERV3_14_KI270846v1_alt"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0111"; repClass "LTR"; repEnd "8423"; repFamily "ERV1"; repLeft "1"; repStart "-3"; chr14_KI270846v1_alt rmsk exon 1336469 1337155 1232 - . gene_id "HERV3_14_KI270846v1_alt"; transcript_id "HERV3_14_KI270846v1_alt"; locus "HERV3_14_KI270846v1_alt"; repName "LTR76"; geneRegion "ltr"; locid "HERV3-int_0111"; repClass "LTR"; repEnd "674"; repFamily "ERV1"; repLeft "10"; repStart "-1"; ### MER4B_14_KI270846v1_alt(d) ### chr14_KI270846v1_alt rmsk gene 1343792 1344633 . - . gene_id "MER4B_14_KI270846v1_alt(d)"; transcript_id "MER4B_14_KI270846v1_alt(d)"; locus "MER4B_14_KI270846v1_alt(d)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0607"; model_cov "873"; model_pct "12.9"; chr14_KI270846v1_alt rmsk exon 1343792 1344633 912 - . gene_id "MER4B_14_KI270846v1_alt(d)"; transcript_id "MER4B_14_KI270846v1_alt(d)"; locus "MER4B_14_KI270846v1_alt(d)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0607"; repClass "LTR"; repEnd "3963"; repFamily "ERV1"; repLeft "3090"; repStart "-2795"; ### HERVL_14_KI270847v1_alt ### chr14_KI270847v1_alt rmsk gene 471851 475903 . + . gene_id "HERVL_14_KI270847v1_alt"; transcript_id "HERVL_14_KI270847v1_alt"; locus "HERVL_14_KI270847v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1495"; model_cov "3033"; model_pct "53.6"; chr14_KI270847v1_alt rmsk exon 471851 472276 3174 + . gene_id "HERVL_14_KI270847v1_alt"; transcript_id "HERVL_14_KI270847v1_alt"; locus "HERVL_14_KI270847v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1495"; repClass "LTR"; repEnd "413"; repFamily "ERVL"; repLeft "-40"; repStart "-100"; chr14_KI270847v1_alt rmsk exon 472521 472592 339 + . gene_id "HERVL_14_KI270847v1_alt"; transcript_id "HERVL_14_KI270847v1_alt"; locus "HERVL_14_KI270847v1_alt"; repName "MLT2A2"; geneRegion "ltr"; locid "HERVL-int_1495"; repClass "LTR"; repEnd "453"; repFamily "ERVL"; repLeft "0"; repStart "376"; chr14_KI270847v1_alt rmsk exon 472593 475493 23740 + . gene_id "HERVL_14_KI270847v1_alt"; transcript_id "HERVL_14_KI270847v1_alt"; locus "HERVL_14_KI270847v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1495"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2692"; repStart "1"; chr14_KI270847v1_alt rmsk exon 475804 475903 23740 + . gene_id "HERVL_14_KI270847v1_alt"; transcript_id "HERVL_14_KI270847v1_alt"; locus "HERVL_14_KI270847v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1495"; repClass "LTR"; repEnd "3035"; repFamily "ERVL"; repLeft "-2619"; repStart "2963"; ### HERVH_14_KI270847v1_alt ### chr14_KI270847v1_alt rmsk gene 673954 679532 . - . gene_id "HERVH_14_KI270847v1_alt"; transcript_id "HERVH_14_KI270847v1_alt"; locus "HERVH_14_KI270847v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1344"; model_cov "4683"; model_pct "60.7"; chr14_KI270847v1_alt rmsk exon 673954 674401 3307 - . gene_id "HERVH_14_KI270847v1_alt"; transcript_id "HERVH_14_KI270847v1_alt"; locus "HERVH_14_KI270847v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1344"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr14_KI270847v1_alt rmsk exon 674402 679079 27611 - . gene_id "HERVH_14_KI270847v1_alt"; transcript_id "HERVH_14_KI270847v1_alt"; locus "HERVH_14_KI270847v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1344"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "3095"; repStart "0"; chr14_KI270847v1_alt rmsk exon 679068 679133 510 - . gene_id "HERVH_14_KI270847v1_alt"; transcript_id "HERVH_14_KI270847v1_alt"; locus "HERVH_14_KI270847v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1344"; repClass "LTR"; repEnd "66"; repFamily "ERV1"; repLeft "1"; repStart "-7647"; chr14_KI270847v1_alt rmsk exon 679136 679532 2701 - . gene_id "HERVH_14_KI270847v1_alt"; transcript_id "HERVH_14_KI270847v1_alt"; locus "HERVH_14_KI270847v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1344"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLE_14_KI270847v1_alt ### chr14_KI270847v1_alt rmsk gene 907200 909146 . + . gene_id "ERVLE_14_KI270847v1_alt"; transcript_id "ERVLE_14_KI270847v1_alt"; locus "ERVLE_14_KI270847v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3923"; model_cov "1247"; model_pct "22.0"; chr14_KI270847v1_alt rmsk exon 907200 907604 611 + . gene_id "ERVLE_14_KI270847v1_alt"; transcript_id "ERVLE_14_KI270847v1_alt"; locus "ERVLE_14_KI270847v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3923"; repClass "LTR"; repEnd "1530"; repFamily "ERVL"; repLeft "-4137"; repStart "1099"; chr14_KI270847v1_alt rmsk exon 907901 908007 611 + . gene_id "ERVLE_14_KI270847v1_alt"; transcript_id "ERVLE_14_KI270847v1_alt"; locus "ERVLE_14_KI270847v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3923"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "-4046"; repStart "1531"; chr14_KI270847v1_alt rmsk exon 908114 908417 599 + . gene_id "ERVLE_14_KI270847v1_alt"; transcript_id "ERVLE_14_KI270847v1_alt"; locus "ERVLE_14_KI270847v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3923"; repClass "LTR"; repEnd "3657"; repFamily "ERVL"; repLeft "-2010"; repStart "3348"; chr14_KI270847v1_alt rmsk exon 908689 909146 952 + . gene_id "ERVLE_14_KI270847v1_alt"; transcript_id "ERVLE_14_KI270847v1_alt"; locus "ERVLE_14_KI270847v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3923"; repClass "LTR"; repEnd "5007"; repFamily "ERVL"; repLeft "-660"; repStart "4590"; ### MER41_14_KI270847v1_alt ### chr14_KI270847v1_alt rmsk gene 1203669 1207266 . - . gene_id "MER41_14_KI270847v1_alt"; transcript_id "MER41_14_KI270847v1_alt"; locus "MER41_14_KI270847v1_alt"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0665"; model_cov "2414"; model_pct "40.6"; chr14_KI270847v1_alt rmsk exon 1203669 1204291 4209 - . gene_id "MER41_14_KI270847v1_alt"; transcript_id "MER41_14_KI270847v1_alt"; locus "MER41_14_KI270847v1_alt"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0665"; repClass "LTR"; repEnd "634"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr14_KI270847v1_alt rmsk exon 1204292 1206404 16010 - . gene_id "MER41_14_KI270847v1_alt"; transcript_id "MER41_14_KI270847v1_alt"; locus "MER41_14_KI270847v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0665"; repClass "LTR"; repEnd "5946"; repFamily "ERV1"; repLeft "3772"; repStart "0"; chr14_KI270847v1_alt rmsk exon 1206718 1206793 16010 - . gene_id "MER41_14_KI270847v1_alt"; transcript_id "MER41_14_KI270847v1_alt"; locus "MER41_14_KI270847v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0665"; repClass "LTR"; repEnd "3771"; repFamily "ERV1"; repLeft "3696"; repStart "-2175"; chr14_KI270847v1_alt rmsk exon 1207103 1207266 16010 - . gene_id "MER41_14_KI270847v1_alt"; transcript_id "MER41_14_KI270847v1_alt"; locus "MER41_14_KI270847v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0665"; repClass "LTR"; repEnd "3695"; repFamily "ERV1"; repLeft "3530"; repStart "-2251"; ### HERV9_15_KI270849v1_alt(a) ### chr15_KI270849v1_alt rmsk gene 193854 197651 . - . gene_id "HERV9_15_KI270849v1_alt(a)"; transcript_id "HERV9_15_KI270849v1_alt(a)"; locus "HERV9_15_KI270849v1_alt(a)"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0241"; model_cov "3425"; model_pct "40.6"; chr15_KI270849v1_alt rmsk exon 193854 193935 646 - . gene_id "HERV9_15_KI270849v1_alt(a)"; transcript_id "HERV9_15_KI270849v1_alt(a)"; locus "HERV9_15_KI270849v1_alt(a)"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0241"; repClass "LTR"; repEnd "82"; repFamily "ERV1"; repLeft "1"; repStart "-437"; chr15_KI270849v1_alt rmsk exon 193936 194220 12088 - . gene_id "HERV9_15_KI270849v1_alt(a)"; transcript_id "HERV9_15_KI270849v1_alt(a)"; locus "HERV9_15_KI270849v1_alt(a)"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0241"; repClass "LTR"; repEnd "8436"; repFamily "ERV1"; repLeft "8163"; repStart "0"; chr15_KI270849v1_alt rmsk exon 194526 195756 12088 - . gene_id "HERV9_15_KI270849v1_alt(a)"; transcript_id "HERV9_15_KI270849v1_alt(a)"; locus "HERV9_15_KI270849v1_alt(a)"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0241"; repClass "LTR"; repEnd "8162"; repFamily "ERV1"; repLeft "6911"; repStart "-274"; chr15_KI270849v1_alt rmsk exon 195755 197651 15382 - . gene_id "HERV9_15_KI270849v1_alt(a)"; transcript_id "HERV9_15_KI270849v1_alt(a)"; locus "HERV9_15_KI270849v1_alt(a)"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0241"; repClass "LTR"; repEnd "5586"; repFamily "ERV1"; repLeft "3685"; repStart "-2850"; ### HERV9_15_KI270849v1_alt(b) ### chr15_KI270849v1_alt rmsk gene 204166 208239 . - . gene_id "HERV9_15_KI270849v1_alt(b)"; transcript_id "HERV9_15_KI270849v1_alt(b)"; locus "HERV9_15_KI270849v1_alt(b)"; category "oneside"; intModel "HERV9-int"; locid "HERV9-int_0242"; model_cov "3669"; model_pct "43.5"; chr15_KI270849v1_alt rmsk exon 204166 207743 20560 - . gene_id "HERV9_15_KI270849v1_alt(b)"; transcript_id "HERV9_15_KI270849v1_alt(b)"; locus "HERV9_15_KI270849v1_alt(b)"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0242"; repClass "LTR"; repEnd "3698"; repFamily "ERV1"; repLeft "29"; repStart "-4738"; chr15_KI270849v1_alt rmsk exon 207764 208239 3419 - . gene_id "HERV9_15_KI270849v1_alt(b)"; transcript_id "HERV9_15_KI270849v1_alt(b)"; locus "HERV9_15_KI270849v1_alt(b)"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0242"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "16"; repStart "0"; ### HUERSP1_15_KI270849v1_alt ### chr15_KI270849v1_alt rmsk gene 208529 215263 . - . gene_id "HUERSP1_15_KI270849v1_alt"; transcript_id "HUERSP1_15_KI270849v1_alt"; locus "HUERSP1_15_KI270849v1_alt"; category "prototype"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0243"; model_cov "4643"; model_pct "74.1"; chr15_KI270849v1_alt rmsk exon 208529 208663 874 - . gene_id "HUERSP1_15_KI270849v1_alt"; transcript_id "HUERSP1_15_KI270849v1_alt"; locus "HUERSP1_15_KI270849v1_alt"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0243"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "1"; repStart "-556"; chr15_KI270849v1_alt rmsk exon 208664 209476 8960 - . gene_id "HUERSP1_15_KI270849v1_alt"; transcript_id "HUERSP1_15_KI270849v1_alt"; locus "HUERSP1_15_KI270849v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0243"; repClass "LTR"; repEnd "5893"; repFamily "ERV1"; repLeft "5366"; repStart "-370"; chr15_KI270849v1_alt rmsk exon 209786 214542 22204 - . gene_id "HUERSP1_15_KI270849v1_alt"; transcript_id "HUERSP1_15_KI270849v1_alt"; locus "HUERSP1_15_KI270849v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0243"; repClass "LTR"; repEnd "5365"; repFamily "ERV1"; repLeft "1249"; repStart "-898"; chr15_KI270849v1_alt rmsk exon 214543 215263 4473 - . gene_id "HUERSP1_15_KI270849v1_alt"; transcript_id "HUERSP1_15_KI270849v1_alt"; locus "HUERSP1_15_KI270849v1_alt"; repName "LTR8"; geneRegion "ltr"; locid "HUERS-P1-int_0243"; repClass "LTR"; repEnd "691"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVI_15_KI270850v1_alt(a) ### chr15_KI270850v1_alt rmsk gene 72045 81026 . - . gene_id "HERVI_15_KI270850v1_alt(a)"; transcript_id "HERVI_15_KI270850v1_alt(a)"; locus "HERVI_15_KI270850v1_alt(a)"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0043"; model_cov "7757"; model_pct "99.6"; chr15_KI270850v1_alt rmsk exon 72045 72481 1340 - . gene_id "HERVI_15_KI270850v1_alt(a)"; transcript_id "HERVI_15_KI270850v1_alt(a)"; locus "HERVI_15_KI270850v1_alt(a)"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0043"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-85"; repStart "-64"; chr15_KI270850v1_alt rmsk exon 72486 80228 27180 - . gene_id "HERVI_15_KI270850v1_alt(a)"; transcript_id "HERVI_15_KI270850v1_alt(a)"; locus "HERVI_15_KI270850v1_alt(a)"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0043"; repClass "LTR"; repEnd "7783"; repFamily "ERV1"; repLeft "26"; repStart "-2"; chr15_KI270850v1_alt rmsk exon 80595 81026 1317 - . gene_id "HERVI_15_KI270850v1_alt(a)"; transcript_id "HERVI_15_KI270850v1_alt(a)"; locus "HERVI_15_KI270850v1_alt(a)"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0043"; repClass "LTR"; repEnd "496"; repFamily "ERV1"; repLeft "1"; repStart "-27"; ### HERVI_15_KI270850v1_alt(b) ### chr15_KI270850v1_alt rmsk gene 276132 285134 . + . gene_id "HERVI_15_KI270850v1_alt(b)"; transcript_id "HERVI_15_KI270850v1_alt(b)"; locus "HERVI_15_KI270850v1_alt(b)"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0044"; model_cov "7757"; model_pct "99.6"; chr15_KI270850v1_alt rmsk exon 276132 276568 1399 + . gene_id "HERVI_15_KI270850v1_alt(b)"; transcript_id "HERVI_15_KI270850v1_alt(b)"; locus "HERVI_15_KI270850v1_alt(b)"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0044"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "-22"; repStart "1"; chr15_KI270850v1_alt rmsk exon 276887 276905 1399 + . gene_id "HERVI_15_KI270850v1_alt(b)"; transcript_id "HERVI_15_KI270850v1_alt(b)"; locus "HERVI_15_KI270850v1_alt(b)"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0044"; repClass "LTR"; repEnd "522"; repFamily "ERV1"; repLeft "-1"; repStart "502"; chr15_KI270850v1_alt rmsk exon 276930 284693 27707 + . gene_id "HERVI_15_KI270850v1_alt(b)"; transcript_id "HERVI_15_KI270850v1_alt(b)"; locus "HERVI_15_KI270850v1_alt(b)"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0044"; repClass "LTR"; repEnd "7783"; repFamily "ERV1"; repLeft "-2"; repStart "26"; chr15_KI270850v1_alt rmsk exon 284698 285134 1406 + . gene_id "HERVI_15_KI270850v1_alt(b)"; transcript_id "HERVI_15_KI270850v1_alt(b)"; locus "HERVI_15_KI270850v1_alt(b)"; repName "LTR10G"; geneRegion "ltr"; locid "HERVI-int_0044"; repClass "LTR"; repEnd "459"; repFamily "ERV1"; repLeft "-64"; repStart "-85"; ### MER4_15_KI270852v1_alt ### chr15_KI270852v1_alt rmsk gene 161920 162859 . - . gene_id "MER4_15_KI270852v1_alt"; transcript_id "MER4_15_KI270852v1_alt"; locus "MER4_15_KI270852v1_alt"; category "internal"; intModel "MER4-int"; locid "MER4-int_1034"; model_cov "958"; model_pct "14.5"; chr15_KI270852v1_alt rmsk exon 161920 162307 669 - . gene_id "MER4_15_KI270852v1_alt"; transcript_id "MER4_15_KI270852v1_alt"; locus "MER4_15_KI270852v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1034"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "762"; repStart "-5501"; chr15_KI270852v1_alt rmsk exon 162314 162859 2092 - . gene_id "MER4_15_KI270852v1_alt"; transcript_id "MER4_15_KI270852v1_alt"; locus "MER4_15_KI270852v1_alt"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1034"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### ERV316A3_15_KI270852v1_alt ### chr15_KI270852v1_alt rmsk gene 351247 351963 . - . gene_id "ERV316A3_15_KI270852v1_alt"; transcript_id "ERV316A3_15_KI270852v1_alt"; locus "ERV316A3_15_KI270852v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3019"; model_cov "733"; model_pct "14.0"; chr15_KI270852v1_alt rmsk exon 351247 351963 1075 - . gene_id "ERV316A3_15_KI270852v1_alt"; transcript_id "ERV316A3_15_KI270852v1_alt"; locus "ERV316A3_15_KI270852v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3019"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "3403"; repStart "-1090"; ### HERVL74_15_KI270852v1_alt ### chr15_KI270852v1_alt rmsk gene 460838 464613 . - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0150"; model_cov "3491"; model_pct "61.4"; chr15_KI270852v1_alt rmsk exon 460838 461184 795 - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0150"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "60"; repStart "-212"; chr15_KI270852v1_alt rmsk exon 461243 461446 636 - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0150"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "5393"; repStart "-88"; chr15_KI270852v1_alt rmsk exon 461465 462088 1038 - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0150"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "4611"; repStart "-417"; chr15_KI270852v1_alt rmsk exon 462114 462291 522 - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0150"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "3890"; repStart "-1621"; chr15_KI270852v1_alt rmsk exon 462296 464613 4034 - . gene_id "HERVL74_15_KI270852v1_alt"; transcript_id "HERVL74_15_KI270852v1_alt"; locus "HERVL74_15_KI270852v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0150"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "1196"; repStart "-2033"; ### HERVL32_15_KI270852v1_alt ### chr15_KI270852v1_alt rmsk gene 478159 478998 . - . gene_id "HERVL32_15_KI270852v1_alt"; transcript_id "HERVL32_15_KI270852v1_alt"; locus "HERVL32_15_KI270852v1_alt"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0064"; model_cov "839"; model_pct "24.5"; chr15_KI270852v1_alt rmsk exon 478159 478998 2520 - . gene_id "HERVL32_15_KI270852v1_alt"; transcript_id "HERVL32_15_KI270852v1_alt"; locus "HERVL32_15_KI270852v1_alt"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0064"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1841"; repStart "-738"; ### ERVLE_15_KI270905v1_alt(a) ### chr15_KI270905v1_alt rmsk gene 33892 35235 . + . gene_id "ERVLE_15_KI270905v1_alt(a)"; transcript_id "ERVLE_15_KI270905v1_alt(a)"; locus "ERVLE_15_KI270905v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3925"; model_cov "793"; model_pct "14.0"; chr15_KI270905v1_alt rmsk exon 33892 34311 1201 + . gene_id "ERVLE_15_KI270905v1_alt(a)"; transcript_id "ERVLE_15_KI270905v1_alt(a)"; locus "ERVLE_15_KI270905v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3925"; repClass "LTR"; repEnd "4848"; repFamily "ERVL"; repLeft "-819"; repStart "4411"; chr15_KI270905v1_alt rmsk exon 34891 35235 1201 + . gene_id "ERVLE_15_KI270905v1_alt(a)"; transcript_id "ERVLE_15_KI270905v1_alt(a)"; locus "ERVLE_15_KI270905v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3925"; repClass "LTR"; repEnd "5205"; repFamily "ERVL"; repLeft "-462"; repStart "4849"; ### ERVLB4_15_KI270905v1_alt(a) ### chr15_KI270905v1_alt rmsk gene 2594445 2598599 . + . gene_id "ERVLB4_15_KI270905v1_alt(a)"; transcript_id "ERVLB4_15_KI270905v1_alt(a)"; locus "ERVLB4_15_KI270905v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2036"; model_cov "4345"; model_pct "76.0"; chr15_KI270905v1_alt rmsk exon 2594445 2598599 21761 + . gene_id "ERVLB4_15_KI270905v1_alt(a)"; transcript_id "ERVLB4_15_KI270905v1_alt(a)"; locus "ERVLB4_15_KI270905v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2036"; repClass "LTR"; repEnd "4916"; repFamily "ERVL"; repLeft "-798"; repStart "571"; ### ERVLE_15_KI270905v1_alt(b) ### chr15_KI270905v1_alt rmsk gene 2604338 2607621 . - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3927"; model_cov "1563"; model_pct "27.6"; chr15_KI270905v1_alt rmsk exon 2604338 2604446 431 - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3927"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "5067"; repStart "-493"; chr15_KI270905v1_alt rmsk exon 2605849 2606377 1454 - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3927"; repClass "LTR"; repEnd "4000"; repFamily "ERVL"; repLeft "3434"; repStart "-1667"; chr15_KI270905v1_alt rmsk exon 2606401 2606618 459 - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3927"; repClass "LTR"; repEnd "3374"; repFamily "ERVL"; repLeft "3137"; repStart "-2293"; chr15_KI270905v1_alt rmsk exon 2606983 2607391 982 - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3927"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "2578"; repStart "-2661"; chr15_KI270905v1_alt rmsk exon 2607400 2607621 306 - . gene_id "ERVLE_15_KI270905v1_alt(b)"; transcript_id "ERVLE_15_KI270905v1_alt(b)"; locus "ERVLE_15_KI270905v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3927"; repClass "LTR"; repEnd "1110"; repFamily "ERVL"; repLeft "885"; repStart "-4557"; ### ERVLB4_15_KI270905v1_alt(b) ### chr15_KI270905v1_alt rmsk gene 2749783 2752768 . - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2037"; model_cov "1356"; model_pct "23.7"; chr15_KI270905v1_alt rmsk exon 2749783 2750126 4831 - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2037"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "1009"; repStart "-4354"; chr15_KI270905v1_alt rmsk exon 2750737 2750872 4831 - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2037"; repClass "LTR"; repEnd "1008"; repFamily "ERVL"; repLeft "850"; repStart "-4706"; chr15_KI270905v1_alt rmsk exon 2751397 2751640 4831 - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2037"; repClass "LTR"; repEnd "849"; repFamily "ERVL"; repLeft "659"; repStart "-4865"; chr15_KI270905v1_alt rmsk exon 2752145 2752705 4831 - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2037"; repClass "LTR"; repEnd "718"; repFamily "ERVL"; repLeft "61"; repStart "-4996"; chr15_KI270905v1_alt rmsk exon 2752706 2752768 327 - . gene_id "ERVLB4_15_KI270905v1_alt(b)"; transcript_id "ERVLB4_15_KI270905v1_alt(b)"; locus "ERVLB4_15_KI270905v1_alt(b)"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_2037"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "453"; repStart "0"; ### HERVL74_15_KI270905v1_alt(a) ### chr15_KI270905v1_alt rmsk gene 3140525 3141276 . + . gene_id "HERVL74_15_KI270905v1_alt(a)"; transcript_id "HERVL74_15_KI270905v1_alt(a)"; locus "HERVL74_15_KI270905v1_alt(a)"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0151"; model_cov "740"; model_pct "13.0"; chr15_KI270905v1_alt rmsk exon 3140525 3140926 1424 + . gene_id "HERVL74_15_KI270905v1_alt(a)"; transcript_id "HERVL74_15_KI270905v1_alt(a)"; locus "HERVL74_15_KI270905v1_alt(a)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0151"; repClass "LTR"; repEnd "3346"; repFamily "ERVL"; repLeft "-2339"; repStart "2931"; chr15_KI270905v1_alt rmsk exon 3140956 3141276 1565 + . gene_id "HERVL74_15_KI270905v1_alt(a)"; transcript_id "HERVL74_15_KI270905v1_alt(a)"; locus "HERVL74_15_KI270905v1_alt(a)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0151"; repClass "LTR"; repEnd "3721"; repFamily "ERVL"; repLeft "-1964"; repStart "3396"; ### HERVL74_15_KI270905v1_alt(b) ### chr15_KI270905v1_alt rmsk gene 3141682 3146389 . + . gene_id "HERVL74_15_KI270905v1_alt(b)"; transcript_id "HERVL74_15_KI270905v1_alt(b)"; locus "HERVL74_15_KI270905v1_alt(b)"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0152"; model_cov "1748"; model_pct "30.7"; chr15_KI270905v1_alt rmsk exon 3141682 3141916 1154 + . gene_id "HERVL74_15_KI270905v1_alt(b)"; transcript_id "HERVL74_15_KI270905v1_alt(b)"; locus "HERVL74_15_KI270905v1_alt(b)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0152"; repClass "LTR"; repEnd "2028"; repFamily "ERVL"; repLeft "-3657"; repStart "1788"; chr15_KI270905v1_alt rmsk exon 3144053 3144332 1002 + . gene_id "HERVL74_15_KI270905v1_alt(b)"; transcript_id "HERVL74_15_KI270905v1_alt(b)"; locus "HERVL74_15_KI270905v1_alt(b)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0152"; repClass "LTR"; repEnd "3424"; repFamily "ERVL"; repLeft "-2261"; repStart "3130"; chr15_KI270905v1_alt rmsk exon 3144344 3144552 808 + . gene_id "HERVL74_15_KI270905v1_alt(b)"; transcript_id "HERVL74_15_KI270905v1_alt(b)"; locus "HERVL74_15_KI270905v1_alt(b)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0152"; repClass "LTR"; repEnd "3749"; repFamily "ERVL"; repLeft "-1936"; repStart "3536"; chr15_KI270905v1_alt rmsk exon 3145339 3146389 4076 + . gene_id "HERVL74_15_KI270905v1_alt(b)"; transcript_id "HERVL74_15_KI270905v1_alt(b)"; locus "HERVL74_15_KI270905v1_alt(b)"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0152"; repClass "LTR"; repEnd "4876"; repFamily "ERVL"; repLeft "-809"; repStart "3875"; ### ERVLB4_15_KI270905v1_alt(c) ### chr15_KI270905v1_alt rmsk gene 3150422 3153097 . - . gene_id "ERVLB4_15_KI270905v1_alt(c)"; transcript_id "ERVLB4_15_KI270905v1_alt(c)"; locus "ERVLB4_15_KI270905v1_alt(c)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2038"; model_cov "2092"; model_pct "36.6"; chr15_KI270905v1_alt rmsk exon 3150422 3151024 1790 - . gene_id "ERVLB4_15_KI270905v1_alt(c)"; transcript_id "ERVLB4_15_KI270905v1_alt(c)"; locus "ERVLB4_15_KI270905v1_alt(c)"; repName "MLT2B3"; geneRegion "ltr"; locid "ERVL-B4-int_2038"; repClass "LTR"; repEnd "554"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr15_KI270905v1_alt rmsk exon 3151025 3153097 11532 - . gene_id "ERVLB4_15_KI270905v1_alt(c)"; transcript_id "ERVLB4_15_KI270905v1_alt(c)"; locus "ERVLB4_15_KI270905v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2038"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "3622"; repStart "0"; ### ERVLB4_15_KI270905v1_alt(d) ### chr15_KI270905v1_alt rmsk gene 3153116 3158678 . + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2039"; model_cov "3529"; model_pct "61.8"; chr15_KI270905v1_alt rmsk exon 3153116 3153266 3013 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "1882"; repFamily "ERVL"; repLeft "-3832"; repStart "1732"; chr15_KI270905v1_alt rmsk exon 3153578 3154024 3013 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "2328"; repFamily "ERVL"; repLeft "-3386"; repStart "1883"; chr15_KI270905v1_alt rmsk exon 3155156 3157168 10230 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "4406"; repFamily "ERVL"; repLeft "-1308"; repStart "2322"; chr15_KI270905v1_alt rmsk exon 3157157 3157667 2236 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "5399"; repFamily "ERVL"; repLeft "-315"; repStart "4871"; chr15_KI270905v1_alt rmsk exon 3157751 3158055 1599 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "5714"; repFamily "ERVL"; repLeft "0"; repStart "5392"; chr15_KI270905v1_alt rmsk exon 3158059 3158208 722 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "160"; repFamily "ERVL"; repLeft "-254"; repStart "5"; chr15_KI270905v1_alt rmsk exon 3158602 3158678 484 + . gene_id "ERVLB4_15_KI270905v1_alt(d)"; transcript_id "ERVLB4_15_KI270905v1_alt(d)"; locus "ERVLB4_15_KI270905v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2039"; repClass "LTR"; repEnd "231"; repFamily "ERVL"; repLeft "-183"; repStart "148"; ### LTR23_15_KI270905v1_alt ### chr15_KI270905v1_alt rmsk gene 3424991 3427564 . + . gene_id "LTR23_15_KI270905v1_alt"; transcript_id "LTR23_15_KI270905v1_alt"; locus "LTR23_15_KI270905v1_alt"; category "internal"; intModel "LTR23-int"; locid "LTR23-int_0093"; model_cov "2186"; model_pct "42.7"; chr15_KI270905v1_alt rmsk exon 3424991 3425789 1769 + . gene_id "LTR23_15_KI270905v1_alt"; transcript_id "LTR23_15_KI270905v1_alt"; locus "LTR23_15_KI270905v1_alt"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0093"; repClass "LTR"; repEnd "1099"; repFamily "ERV1"; repLeft "-4024"; repStart "-272"; chr15_KI270905v1_alt rmsk exon 3426892 3427564 1305 + . gene_id "LTR23_15_KI270905v1_alt"; transcript_id "LTR23_15_KI270905v1_alt"; locus "LTR23_15_KI270905v1_alt"; repName "LTR23-int"; geneRegion "internal"; locid "LTR23-int_0093"; repClass "LTR"; repEnd "1470"; repFamily "ERV1"; repLeft "-3653"; repStart "655"; ### ERV316A3_15_KI270905v1_alt(a) ### chr15_KI270905v1_alt rmsk gene 3526882 3528324 . - . gene_id "ERV316A3_15_KI270905v1_alt(a)"; transcript_id "ERV316A3_15_KI270905v1_alt(a)"; locus "ERV316A3_15_KI270905v1_alt(a)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3020"; model_cov "1491"; model_pct "28.5"; chr15_KI270905v1_alt rmsk exon 3526882 3527012 410 - . gene_id "ERV316A3_15_KI270905v1_alt(a)"; transcript_id "ERV316A3_15_KI270905v1_alt(a)"; locus "ERV316A3_15_KI270905v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3020"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3806"; repStart "-1270"; chr15_KI270905v1_alt rmsk exon 3527009 3527460 1113 - . gene_id "ERV316A3_15_KI270905v1_alt(a)"; transcript_id "ERV316A3_15_KI270905v1_alt(a)"; locus "ERV316A3_15_KI270905v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3020"; repClass "LTR"; repEnd "3476"; repFamily "ERVL"; repLeft "2964"; repStart "-1750"; chr15_KI270905v1_alt rmsk exon 3527459 3528324 2029 - . gene_id "ERV316A3_15_KI270905v1_alt(a)"; transcript_id "ERV316A3_15_KI270905v1_alt(a)"; locus "ERV316A3_15_KI270905v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3020"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "2153"; repStart "-2244"; ### ERV316A3_15_KI270905v1_alt(b) ### chr15_KI270905v1_alt rmsk gene 3561954 3564201 . - . gene_id "ERV316A3_15_KI270905v1_alt(b)"; transcript_id "ERV316A3_15_KI270905v1_alt(b)"; locus "ERV316A3_15_KI270905v1_alt(b)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3021"; model_cov "1698"; model_pct "32.5"; chr15_KI270905v1_alt rmsk exon 3561954 3563176 1954 - . gene_id "ERV316A3_15_KI270905v1_alt(b)"; transcript_id "ERV316A3_15_KI270905v1_alt(b)"; locus "ERV316A3_15_KI270905v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3021"; repClass "LTR"; repEnd "2426"; repFamily "ERVL"; repLeft "1172"; repStart "-2800"; chr15_KI270905v1_alt rmsk exon 3563332 3563424 255 - . gene_id "ERV316A3_15_KI270905v1_alt(b)"; transcript_id "ERV316A3_15_KI270905v1_alt(b)"; locus "ERV316A3_15_KI270905v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3021"; repClass "LTR"; repEnd "1267"; repFamily "ERVL"; repLeft "1168"; repStart "-3959"; chr15_KI270905v1_alt rmsk exon 3563857 3564201 392 - . gene_id "ERV316A3_15_KI270905v1_alt(b)"; transcript_id "ERV316A3_15_KI270905v1_alt(b)"; locus "ERV316A3_15_KI270905v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3021"; repClass "LTR"; repEnd "1062"; repFamily "ERVL"; repLeft "717"; repStart "-4164"; ### ERVLB4_15_KI270905v1_alt(e) ### chr15_KI270905v1_alt rmsk gene 3733913 3736684 . - . gene_id "ERVLB4_15_KI270905v1_alt(e)"; transcript_id "ERVLB4_15_KI270905v1_alt(e)"; locus "ERVLB4_15_KI270905v1_alt(e)"; category "prototype"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2041"; model_cov "1931"; model_pct "33.8"; chr15_KI270905v1_alt rmsk exon 3733913 3733998 393 - . gene_id "ERVLB4_15_KI270905v1_alt(e)"; transcript_id "ERVLB4_15_KI270905v1_alt(e)"; locus "ERVLB4_15_KI270905v1_alt(e)"; repName "MLT2C2"; geneRegion "ltr"; locid "ERVL-B4-int_2041"; repClass "LTR"; repEnd "86"; repFamily "ERVL"; repLeft "1"; repStart "-378"; chr15_KI270905v1_alt rmsk exon 3733999 3735640 9510 - . gene_id "ERVLB4_15_KI270905v1_alt(e)"; transcript_id "ERVLB4_15_KI270905v1_alt(e)"; locus "ERVLB4_15_KI270905v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2041"; repClass "LTR"; repEnd "5713"; repFamily "ERVL"; repLeft "4037"; repStart "-1"; chr15_KI270905v1_alt rmsk exon 3735945 3736225 9510 - . gene_id "ERVLB4_15_KI270905v1_alt(e)"; transcript_id "ERVLB4_15_KI270905v1_alt(e)"; locus "ERVLB4_15_KI270905v1_alt(e)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2041"; repClass "LTR"; repEnd "4036"; repFamily "ERVL"; repLeft "3781"; repStart "-1678"; chr15_KI270905v1_alt rmsk exon 3736340 3736684 1548 - . gene_id "ERVLB4_15_KI270905v1_alt(e)"; transcript_id "ERVLB4_15_KI270905v1_alt(e)"; locus "ERVLB4_15_KI270905v1_alt(e)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2041"; repClass "LTR"; repEnd "378"; repFamily "ERVL"; repLeft "21"; repStart "-36"; ### ERVLE_15_KI270905v1_alt(c) ### chr15_KI270905v1_alt rmsk gene 3753416 3758700 . + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3928"; model_cov "3319"; model_pct "58.6"; chr15_KI270905v1_alt rmsk exon 3753416 3753962 2483 + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3928"; repClass "LTR"; repEnd "2406"; repFamily "ERVL"; repLeft "-3261"; repStart "1876"; chr15_KI270905v1_alt rmsk exon 3754271 3754550 2483 + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3928"; repClass "LTR"; repEnd "2719"; repFamily "ERVL"; repLeft "-2948"; repStart "2407"; chr15_KI270905v1_alt rmsk exon 3755599 3755855 2483 + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3928"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "-2661"; repStart "2720"; chr15_KI270905v1_alt rmsk exon 3755852 3756509 1185 + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3928"; repClass "LTR"; repEnd "3767"; repFamily "ERVL"; repLeft "-1900"; repStart "3072"; chr15_KI270905v1_alt rmsk exon 3757251 3758700 3518 + . gene_id "ERVLE_15_KI270905v1_alt(c)"; transcript_id "ERVLE_15_KI270905v1_alt(c)"; locus "ERVLE_15_KI270905v1_alt(c)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3928"; repClass "LTR"; repEnd "5261"; repFamily "ERVL"; repLeft "-406"; repStart "3765"; ### HERVIP10FH_15_KI270905v1_alt ### chr15_KI270905v1_alt rmsk gene 3790813 3798136 . - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; category "prototype"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0236"; model_cov "3725"; model_pct "73.0"; chr15_KI270905v1_alt rmsk exon 3790813 3791382 3670 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr15_KI270905v1_alt rmsk exon 3791406 3791587 6325 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "5042"; repFamily "ERV1"; repLeft "4855"; repStart "-60"; chr15_KI270905v1_alt rmsk exon 3791871 3793275 6325 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "4854"; repFamily "ERV1"; repLeft "3369"; repStart "-248"; chr15_KI270905v1_alt rmsk exon 3793730 3794179 6325 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "3368"; repFamily "ERV1"; repLeft "2889"; repStart "-1734"; chr15_KI270905v1_alt rmsk exon 3794478 3795112 6325 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "2888"; repFamily "ERV1"; repLeft "2298"; repStart "-2214"; chr15_KI270905v1_alt rmsk exon 3795405 3795685 6325 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "2297"; repFamily "ERV1"; repLeft "2018"; repStart "-2805"; chr15_KI270905v1_alt rmsk exon 3796187 3796303 545 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "664"; repStart "-4330"; chr15_KI270905v1_alt rmsk exon 3796942 3797544 2648 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "599"; repFamily "ERV1"; repLeft "2"; repStart "-4503"; chr15_KI270905v1_alt rmsk exon 3797547 3798136 4101 - . gene_id "HERVIP10FH_15_KI270905v1_alt"; transcript_id "HERVIP10FH_15_KI270905v1_alt"; locus "HERVIP10FH_15_KI270905v1_alt"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0236"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERVLE_15_KI270905v1_alt(d) ### chr15_KI270905v1_alt rmsk gene 3869294 3870343 . + . gene_id "ERVLE_15_KI270905v1_alt(d)"; transcript_id "ERVLE_15_KI270905v1_alt(d)"; locus "ERVLE_15_KI270905v1_alt(d)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3929"; model_cov "735"; model_pct "13.0"; chr15_KI270905v1_alt rmsk exon 3869294 3869714 467 + . gene_id "ERVLE_15_KI270905v1_alt(d)"; transcript_id "ERVLE_15_KI270905v1_alt(d)"; locus "ERVLE_15_KI270905v1_alt(d)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3929"; repClass "LTR"; repEnd "757"; repFamily "ERVL"; repLeft "-4910"; repStart "332"; chr15_KI270905v1_alt rmsk exon 3870037 3870343 463 + . gene_id "ERVLE_15_KI270905v1_alt(d)"; transcript_id "ERVLE_15_KI270905v1_alt(d)"; locus "ERVLE_15_KI270905v1_alt(d)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3929"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "-1"; repStart "5356"; ### HERVL_15_KI270905v1_alt ### chr15_KI270905v1_alt rmsk gene 4219845 4222958 . + . gene_id "HERVL_15_KI270905v1_alt"; transcript_id "HERVL_15_KI270905v1_alt"; locus "HERVL_15_KI270905v1_alt"; category "internal"; intModel "HERVL-int"; locid "HERVL-int_1496"; model_cov "3113"; model_pct "55.1"; chr15_KI270905v1_alt rmsk exon 4219845 4219913 406 + . gene_id "HERVL_15_KI270905v1_alt"; transcript_id "HERVL_15_KI270905v1_alt"; locus "HERVL_15_KI270905v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1496"; repClass "LTR"; repEnd "526"; repFamily "ERVL"; repLeft "-5128"; repStart "456"; chr15_KI270905v1_alt rmsk exon 4219908 4222819 12619 + . gene_id "HERVL_15_KI270905v1_alt"; transcript_id "HERVL_15_KI270905v1_alt"; locus "HERVL_15_KI270905v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1496"; repClass "LTR"; repEnd "4204"; repFamily "ERVL"; repLeft "-1450"; repStart "1299"; chr15_KI270905v1_alt rmsk exon 4222821 4222958 883 + . gene_id "HERVL_15_KI270905v1_alt"; transcript_id "HERVL_15_KI270905v1_alt"; locus "HERVL_15_KI270905v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1496"; repClass "LTR"; repEnd "4397"; repFamily "ERVL"; repLeft "-1257"; repStart "4259"; ### ERVLE_15_KI270905v1_alt(e) ### chr15_KI270905v1_alt rmsk gene 4493552 4496844 . + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3931"; model_cov "1662"; model_pct "29.3"; chr15_KI270905v1_alt rmsk exon 4493552 4493789 386 + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3931"; repClass "LTR"; repEnd "1135"; repFamily "ERVL"; repLeft "-4532"; repStart "885"; chr15_KI270905v1_alt rmsk exon 4493782 4494190 1111 + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3931"; repClass "LTR"; repEnd "3006"; repFamily "ERVL"; repLeft "-2661"; repStart "2578"; chr15_KI270905v1_alt rmsk exon 4494559 4495328 1661 + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3931"; repClass "LTR"; repEnd "4000"; repFamily "ERVL"; repLeft "-1667"; repStart "3184"; chr15_KI270905v1_alt rmsk exon 4495496 4495556 252 + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3931"; repClass "LTR"; repEnd "4588"; repFamily "ERVL"; repLeft "-1079"; repStart "4527"; chr15_KI270905v1_alt rmsk exon 4496736 4496844 472 + . gene_id "ERVLE_15_KI270905v1_alt(e)"; transcript_id "ERVLE_15_KI270905v1_alt(e)"; locus "ERVLE_15_KI270905v1_alt(e)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3931"; repClass "LTR"; repEnd "5174"; repFamily "ERVL"; repLeft "-493"; repStart "5067"; ### ERVLB4_15_KI270905v1_alt(f) ### chr15_KI270905v1_alt rmsk gene 4508988 4514873 . - . gene_id "ERVLB4_15_KI270905v1_alt(f)"; transcript_id "ERVLB4_15_KI270905v1_alt(f)"; locus "ERVLB4_15_KI270905v1_alt(f)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2042"; model_cov "5137"; model_pct "89.9"; chr15_KI270905v1_alt rmsk exon 4508988 4509316 1103 - . gene_id "ERVLB4_15_KI270905v1_alt(f)"; transcript_id "ERVLB4_15_KI270905v1_alt(f)"; locus "ERVLB4_15_KI270905v1_alt(f)"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_2042"; repClass "LTR"; repEnd "492"; repFamily "ERVL"; repLeft "143"; repStart "-64"; chr15_KI270905v1_alt rmsk exon 4509319 4509545 25176 - . gene_id "ERVLB4_15_KI270905v1_alt(f)"; transcript_id "ERVLB4_15_KI270905v1_alt(f)"; locus "ERVLB4_15_KI270905v1_alt(f)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2042"; repClass "LTR"; repEnd "5710"; repFamily "ERVL"; repLeft "5464"; repStart "-4"; chr15_KI270905v1_alt rmsk exon 4509843 4509960 25176 - . gene_id "ERVLB4_15_KI270905v1_alt(f)"; transcript_id "ERVLB4_15_KI270905v1_alt(f)"; locus "ERVLB4_15_KI270905v1_alt(f)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2042"; repClass "LTR"; repEnd "5463"; repFamily "ERVL"; repLeft "5356"; repStart "-251"; chr15_KI270905v1_alt rmsk exon 4510270 4514873 25176 - . gene_id "ERVLB4_15_KI270905v1_alt(f)"; transcript_id "ERVLB4_15_KI270905v1_alt(f)"; locus "ERVLB4_15_KI270905v1_alt(f)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2042"; repClass "LTR"; repEnd "5355"; repFamily "ERVL"; repLeft "571"; repStart "-359"; ### ERVLB4_15_KI270905v1_alt(g) ### chr15_KI270905v1_alt rmsk gene 4720829 4723814 . - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2043"; model_cov "1401"; model_pct "24.5"; chr15_KI270905v1_alt rmsk exon 4720829 4721172 4009 - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2043"; repClass "LTR"; repEnd "1360"; repFamily "ERVL"; repLeft "1009"; repStart "-4354"; chr15_KI270905v1_alt rmsk exon 4721783 4721918 4009 - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2043"; repClass "LTR"; repEnd "1008"; repFamily "ERVL"; repLeft "850"; repStart "-4706"; chr15_KI270905v1_alt rmsk exon 4722443 4722686 2708 - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2043"; repClass "LTR"; repEnd "851"; repFamily "ERVL"; repLeft "634"; repStart "-4863"; chr15_KI270905v1_alt rmsk exon 4723191 4723751 2708 - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2043"; repClass "LTR"; repEnd "633"; repFamily "ERVL"; repLeft "-42"; repStart "-5081"; chr15_KI270905v1_alt rmsk exon 4723752 4723814 304 - . gene_id "ERVLB4_15_KI270905v1_alt(g)"; transcript_id "ERVLB4_15_KI270905v1_alt(g)"; locus "ERVLB4_15_KI270905v1_alt(g)"; repName "MLT2B2"; geneRegion "ltr"; locid "ERVL-B4-int_2043"; repClass "LTR"; repEnd "515"; repFamily "ERVL"; repLeft "453"; repStart "0"; ### ERV316A3_16_GL383556v1_alt(a) ### chr16_GL383556v1_alt rmsk gene 106182 108049 . - . gene_id "ERV316A3_16_GL383556v1_alt(a)"; transcript_id "ERV316A3_16_GL383556v1_alt(a)"; locus "ERV316A3_16_GL383556v1_alt(a)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3023"; model_cov "1717"; model_pct "32.9"; chr16_GL383556v1_alt rmsk exon 106182 107178 4822 - . gene_id "ERV316A3_16_GL383556v1_alt(a)"; transcript_id "ERV316A3_16_GL383556v1_alt(a)"; locus "ERV316A3_16_GL383556v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3023"; repClass "LTR"; repEnd "2896"; repFamily "ERVL"; repLeft "1693"; repStart "-2330"; chr16_GL383556v1_alt rmsk exon 107486 108049 4822 - . gene_id "ERV316A3_16_GL383556v1_alt(a)"; transcript_id "ERV316A3_16_GL383556v1_alt(a)"; locus "ERV316A3_16_GL383556v1_alt(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3023"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1666"; repStart "-3046"; ### ERV316A3_16_GL383556v1_alt(b) ### chr16_GL383556v1_alt rmsk gene 108100 109729 . - . gene_id "ERV316A3_16_GL383556v1_alt(b)"; transcript_id "ERV316A3_16_GL383556v1_alt(b)"; locus "ERV316A3_16_GL383556v1_alt(b)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3024"; model_cov "827"; model_pct "15.8"; chr16_GL383556v1_alt rmsk exon 108100 108507 4822 - . gene_id "ERV316A3_16_GL383556v1_alt(b)"; transcript_id "ERV316A3_16_GL383556v1_alt(b)"; locus "ERV316A3_16_GL383556v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3024"; repClass "LTR"; repEnd "2180"; repFamily "ERVL"; repLeft "1807"; repStart "-3046"; chr16_GL383556v1_alt rmsk exon 108807 108862 4822 - . gene_id "ERV316A3_16_GL383556v1_alt(b)"; transcript_id "ERV316A3_16_GL383556v1_alt(b)"; locus "ERV316A3_16_GL383556v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3024"; repClass "LTR"; repEnd "1291"; repFamily "ERVL"; repLeft "1236"; repStart "-3935"; chr16_GL383556v1_alt rmsk exon 108882 109273 942 - . gene_id "ERV316A3_16_GL383556v1_alt(b)"; transcript_id "ERV316A3_16_GL383556v1_alt(b)"; locus "ERV316A3_16_GL383556v1_alt(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3024"; repClass "LTR"; repEnd "412"; repFamily "ERVL"; repLeft "13"; repStart "-4814"; chr16_GL383556v1_alt rmsk exon 109301 109729 1370 - . gene_id "ERV316A3_16_GL383556v1_alt(b)"; transcript_id "ERV316A3_16_GL383556v1_alt(b)"; locus "ERV316A3_16_GL383556v1_alt(b)"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3024"; repClass "LTR"; repEnd "441"; repFamily "ERVL"; repLeft "2"; repStart "-21"; ### ERV316A3_16_GL383556v1_alt(c) ### chr16_GL383556v1_alt rmsk gene 109732 111360 . + . gene_id "ERV316A3_16_GL383556v1_alt(c)"; transcript_id "ERV316A3_16_GL383556v1_alt(c)"; locus "ERV316A3_16_GL383556v1_alt(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3025"; model_cov "1483"; model_pct "28.4"; chr16_GL383556v1_alt rmsk exon 109732 109797 275 + . gene_id "ERV316A3_16_GL383556v1_alt(c)"; transcript_id "ERV316A3_16_GL383556v1_alt(c)"; locus "ERV316A3_16_GL383556v1_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3025"; repClass "LTR"; repEnd "2982"; repFamily "ERVL"; repLeft "-2244"; repStart "2917"; chr16_GL383556v1_alt rmsk exon 109812 111360 2014 + . gene_id "ERV316A3_16_GL383556v1_alt(c)"; transcript_id "ERV316A3_16_GL383556v1_alt(c)"; locus "ERV316A3_16_GL383556v1_alt(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3025"; repClass "LTR"; repEnd "4804"; repFamily "ERVL"; repLeft "-422"; repStart "3386"; ### MER101_16_KI270853v1_alt ### chr16_KI270853v1_alt rmsk gene 1041057 1042159 . + . gene_id "MER101_16_KI270853v1_alt"; transcript_id "MER101_16_KI270853v1_alt"; locus "MER101_16_KI270853v1_alt"; category "internal"; intModel "MER101-int"; locid "MER101-int_0470"; model_cov "815"; model_pct "12.3"; chr16_KI270853v1_alt rmsk exon 1041057 1041119 404 + . gene_id "MER101_16_KI270853v1_alt"; transcript_id "MER101_16_KI270853v1_alt"; locus "MER101_16_KI270853v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0470"; repClass "LTR"; repEnd "3137"; repFamily "ERV1"; repLeft "-3502"; repStart "3075"; chr16_KI270853v1_alt rmsk exon 1041111 1041605 1717 + . gene_id "MER101_16_KI270853v1_alt"; transcript_id "MER101_16_KI270853v1_alt"; locus "MER101_16_KI270853v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0470"; repClass "LTR"; repEnd "3787"; repFamily "ERV1"; repLeft "-2852"; repStart "3298"; chr16_KI270853v1_alt rmsk exon 1041605 1041637 942 + . gene_id "MER101_16_KI270853v1_alt"; transcript_id "MER101_16_KI270853v1_alt"; locus "MER101_16_KI270853v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0470"; repClass "LTR"; repEnd "3693"; repFamily "ERV1"; repLeft "-2946"; repStart "3662"; chr16_KI270853v1_alt rmsk exon 1041928 1042159 942 + . gene_id "MER101_16_KI270853v1_alt"; transcript_id "MER101_16_KI270853v1_alt"; locus "MER101_16_KI270853v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0470"; repClass "LTR"; repEnd "3927"; repFamily "ERV1"; repLeft "-2712"; repStart "3694"; ### ERV316A3_16_KI270853v1_alt ### chr16_KI270853v1_alt rmsk gene 2464607 2466054 . - . gene_id "ERV316A3_16_KI270853v1_alt"; transcript_id "ERV316A3_16_KI270853v1_alt"; locus "ERV316A3_16_KI270853v1_alt"; category "prototype"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3026"; model_cov "847"; model_pct "16.2"; chr16_KI270853v1_alt rmsk exon 2464607 2464680 288 - . gene_id "ERV316A3_16_KI270853v1_alt"; transcript_id "ERV316A3_16_KI270853v1_alt"; locus "ERV316A3_16_KI270853v1_alt"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3026"; repClass "LTR"; repEnd "185"; repFamily "ERVL"; repLeft "113"; repStart "-277"; chr16_KI270853v1_alt rmsk exon 2464688 2465170 1349 - . gene_id "ERV316A3_16_KI270853v1_alt"; transcript_id "ERV316A3_16_KI270853v1_alt"; locus "ERV316A3_16_KI270853v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3026"; repClass "LTR"; repEnd "868"; repFamily "ERVL"; repLeft "385"; repStart "-4358"; chr16_KI270853v1_alt rmsk exon 2465218 2465593 909 - . gene_id "ERV316A3_16_KI270853v1_alt"; transcript_id "ERV316A3_16_KI270853v1_alt"; locus "ERV316A3_16_KI270853v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3026"; repClass "LTR"; repEnd "375"; repFamily "ERVL"; repLeft "11"; repStart "-4851"; chr16_KI270853v1_alt rmsk exon 2465600 2466054 2061 - . gene_id "ERV316A3_16_KI270853v1_alt"; transcript_id "ERV316A3_16_KI270853v1_alt"; locus "ERV316A3_16_KI270853v1_alt"; repName "LTR16B2"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3026"; repClass "LTR"; repEnd "462"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### ERVLB4_16_KI270853v1_alt ### chr16_KI270853v1_alt rmsk gene 2585154 2587437 . - . gene_id "ERVLB4_16_KI270853v1_alt"; transcript_id "ERVLB4_16_KI270853v1_alt"; locus "ERVLB4_16_KI270853v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2044"; model_cov "1934"; model_pct "33.8"; chr16_KI270853v1_alt rmsk exon 2585154 2586580 9644 - . gene_id "ERVLB4_16_KI270853v1_alt"; transcript_id "ERVLB4_16_KI270853v1_alt"; locus "ERVLB4_16_KI270853v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2044"; repClass "LTR"; repEnd "2160"; repFamily "ERVL"; repLeft "708"; repStart "-3554"; chr16_KI270853v1_alt rmsk exon 2586950 2587437 9644 - . gene_id "ERVLB4_16_KI270853v1_alt"; transcript_id "ERVLB4_16_KI270853v1_alt"; locus "ERVLB4_16_KI270853v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2044"; repClass "LTR"; repEnd "707"; repFamily "ERVL"; repLeft "225"; repStart "-5007"; ### ERV316A3_17_GL000258v2_alt ### chr17_GL000258v2_alt rmsk gene 899435 906699 . + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3028"; model_cov "3693"; model_pct "70.7"; chr17_GL000258v2_alt rmsk exon 899435 899455 875 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "-4506"; repStart "701"; chr17_GL000258v2_alt rmsk exon 899815 899970 875 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "872"; repFamily "ERVL"; repLeft "-4354"; repStart "721"; chr17_GL000258v2_alt rmsk exon 900024 900350 2029 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "1061"; repFamily "ERVL"; repLeft "-4165"; repStart "725"; chr17_GL000258v2_alt rmsk exon 900666 900896 2029 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "-3940"; repStart "1062"; chr17_GL000258v2_alt rmsk exon 901218 901322 2029 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "1389"; repFamily "ERVL"; repLeft "-3837"; repStart "1287"; chr17_GL000258v2_alt rmsk exon 901885 902023 1452 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "-3688"; repStart "1408"; chr17_GL000258v2_alt rmsk exon 902332 902774 1452 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "-2854"; repStart "1769"; chr17_GL000258v2_alt rmsk exon 904436 905712 6132 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "-1463"; repStart "2507"; chr17_GL000258v2_alt rmsk exon 906015 906699 6132 + . gene_id "ERV316A3_17_GL000258v2_alt"; transcript_id "ERV316A3_17_GL000258v2_alt"; locus "ERV316A3_17_GL000258v2_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3028"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "-1031"; repStart "3323"; ### ERVLE_17_GL000258v2_alt(a) ### chr17_GL000258v2_alt rmsk gene 1196354 1199211 . + . gene_id "ERVLE_17_GL000258v2_alt(a)"; transcript_id "ERVLE_17_GL000258v2_alt(a)"; locus "ERVLE_17_GL000258v2_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3934"; model_cov "586"; model_pct "10.3"; chr17_GL000258v2_alt rmsk exon 1196354 1196463 331 + . gene_id "ERVLE_17_GL000258v2_alt(a)"; transcript_id "ERVLE_17_GL000258v2_alt(a)"; locus "ERVLE_17_GL000258v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3934"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-1291"; repStart "4267"; chr17_GL000258v2_alt rmsk exon 1196458 1196661 763 + . gene_id "ERVLE_17_GL000258v2_alt(a)"; transcript_id "ERVLE_17_GL000258v2_alt(a)"; locus "ERVLE_17_GL000258v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3934"; repClass "LTR"; repEnd "4865"; repFamily "ERVL"; repLeft "-802"; repStart "4657"; chr17_GL000258v2_alt rmsk exon 1197567 1197624 251 + . gene_id "ERVLE_17_GL000258v2_alt(a)"; transcript_id "ERVLE_17_GL000258v2_alt(a)"; locus "ERVLE_17_GL000258v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3934"; repClass "LTR"; repEnd "4940"; repFamily "ERVL"; repLeft "-727"; repStart "4883"; chr17_GL000258v2_alt rmsk exon 1199004 1199211 427 + . gene_id "ERVLE_17_GL000258v2_alt(a)"; transcript_id "ERVLE_17_GL000258v2_alt(a)"; locus "ERVLE_17_GL000258v2_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3934"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "-506"; repStart "4949"; ### ERVLE_17_GL000258v2_alt(b) ### chr17_GL000258v2_alt rmsk gene 1469788 1472646 . + . gene_id "ERVLE_17_GL000258v2_alt(b)"; transcript_id "ERVLE_17_GL000258v2_alt(b)"; locus "ERVLE_17_GL000258v2_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3936"; model_cov "586"; model_pct "10.3"; chr17_GL000258v2_alt rmsk exon 1469788 1469897 331 + . gene_id "ERVLE_17_GL000258v2_alt(b)"; transcript_id "ERVLE_17_GL000258v2_alt(b)"; locus "ERVLE_17_GL000258v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3936"; repClass "LTR"; repEnd "4376"; repFamily "ERVL"; repLeft "-1291"; repStart "4267"; chr17_GL000258v2_alt rmsk exon 1469892 1470095 763 + . gene_id "ERVLE_17_GL000258v2_alt(b)"; transcript_id "ERVLE_17_GL000258v2_alt(b)"; locus "ERVLE_17_GL000258v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3936"; repClass "LTR"; repEnd "4865"; repFamily "ERVL"; repLeft "-802"; repStart "4657"; chr17_GL000258v2_alt rmsk exon 1471002 1471059 251 + . gene_id "ERVLE_17_GL000258v2_alt(b)"; transcript_id "ERVLE_17_GL000258v2_alt(b)"; locus "ERVLE_17_GL000258v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3936"; repClass "LTR"; repEnd "4940"; repFamily "ERVL"; repLeft "-727"; repStart "4883"; chr17_GL000258v2_alt rmsk exon 1472439 1472646 427 + . gene_id "ERVLE_17_GL000258v2_alt(b)"; transcript_id "ERVLE_17_GL000258v2_alt(b)"; locus "ERVLE_17_GL000258v2_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3936"; repClass "LTR"; repEnd "5161"; repFamily "ERVL"; repLeft "-506"; repStart "4949"; ### ERVLE_17_GL383565v1_alt ### chr17_GL383565v1_alt rmsk gene 79001 82728 . - . gene_id "ERVLE_17_GL383565v1_alt"; transcript_id "ERVLE_17_GL383565v1_alt"; locus "ERVLE_17_GL383565v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3938"; model_cov "1051"; model_pct "18.5"; chr17_GL383565v1_alt rmsk exon 79001 79196 382 - . gene_id "ERVLE_17_GL383565v1_alt"; transcript_id "ERVLE_17_GL383565v1_alt"; locus "ERVLE_17_GL383565v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3938"; repClass "LTR"; repEnd "3125"; repFamily "ERVL"; repLeft "2927"; repStart "-2542"; chr17_GL383565v1_alt rmsk exon 80386 80657 599 - . gene_id "ERVLE_17_GL383565v1_alt"; transcript_id "ERVLE_17_GL383565v1_alt"; locus "ERVLE_17_GL383565v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3938"; repClass "LTR"; repEnd "2224"; repFamily "ERVL"; repLeft "1944"; repStart "-3443"; chr17_GL383565v1_alt rmsk exon 81351 81649 375 - . gene_id "ERVLE_17_GL383565v1_alt"; transcript_id "ERVLE_17_GL383565v1_alt"; locus "ERVLE_17_GL383565v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3938"; repClass "LTR"; repEnd "1366"; repFamily "ERVL"; repLeft "1050"; repStart "-4301"; chr17_GL383565v1_alt rmsk exon 82488 82728 386 - . gene_id "ERVLE_17_GL383565v1_alt"; transcript_id "ERVLE_17_GL383565v1_alt"; locus "ERVLE_17_GL383565v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3938"; repClass "LTR"; repEnd "719"; repFamily "ERVL"; repLeft "462"; repStart "-4948"; ### ERV316A3_17_GL383565v1_alt ### chr17_GL383565v1_alt rmsk gene 120479 122288 . - . gene_id "ERV316A3_17_GL383565v1_alt"; transcript_id "ERV316A3_17_GL383565v1_alt"; locus "ERV316A3_17_GL383565v1_alt"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3031"; model_cov "972"; model_pct "18.6"; chr17_GL383565v1_alt rmsk exon 120479 120904 501 - . gene_id "ERV316A3_17_GL383565v1_alt"; transcript_id "ERV316A3_17_GL383565v1_alt"; locus "ERV316A3_17_GL383565v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3031"; repClass "LTR"; repEnd "4383"; repFamily "ERVL"; repLeft "3871"; repStart "-843"; chr17_GL383565v1_alt rmsk exon 120970 121271 663 - . gene_id "ERV316A3_17_GL383565v1_alt"; transcript_id "ERV316A3_17_GL383565v1_alt"; locus "ERV316A3_17_GL383565v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3031"; repClass "LTR"; repEnd "3777"; repFamily "ERVL"; repLeft "3462"; repStart "-1449"; chr17_GL383565v1_alt rmsk exon 121433 121573 281 - . gene_id "ERV316A3_17_GL383565v1_alt"; transcript_id "ERV316A3_17_GL383565v1_alt"; locus "ERV316A3_17_GL383565v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3031"; repClass "LTR"; repEnd "2901"; repFamily "ERVL"; repLeft "2756"; repStart "-2325"; chr17_GL383565v1_alt rmsk exon 121922 122288 1028 - . gene_id "ERV316A3_17_GL383565v1_alt"; transcript_id "ERV316A3_17_GL383565v1_alt"; locus "ERV316A3_17_GL383565v1_alt"; repName "LTR16C"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3031"; repClass "LTR"; repEnd "486"; repFamily "ERVL"; repLeft "98"; repStart "-3"; ### ERVLE_17_JH159146v1_alt ### chr17_JH159146v1_alt rmsk gene 168977 173825 . - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3939"; model_cov "2775"; model_pct "49.0"; chr17_JH159146v1_alt rmsk exon 168977 169313 1189 - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3939"; repClass "LTR"; repEnd "3397"; repFamily "ERVL"; repLeft "3044"; repStart "-2270"; chr17_JH159146v1_alt rmsk exon 169498 170624 3627 - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3939"; repClass "LTR"; repEnd "3041"; repFamily "ERVL"; repLeft "1873"; repStart "-2626"; chr17_JH159146v1_alt rmsk exon 171366 171508 347 - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3939"; repClass "LTR"; repEnd "1621"; repFamily "ERVL"; repLeft "1476"; repStart "-4046"; chr17_JH159146v1_alt rmsk exon 171864 172281 1387 - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3939"; repClass "LTR"; repEnd "1295"; repFamily "ERVL"; repLeft "880"; repStart "-4372"; chr17_JH159146v1_alt rmsk exon 173127 173825 1387 - . gene_id "ERVLE_17_JH159146v1_alt"; transcript_id "ERVLE_17_JH159146v1_alt"; locus "ERVLE_17_JH159146v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3939"; repClass "LTR"; repEnd "879"; repFamily "ERVL"; repLeft "185"; repStart "-4788"; ### MER4_17_JH159146v1_alt(a) ### chr17_JH159146v1_alt rmsk gene 237117 238598 . + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1035"; model_cov "936"; model_pct "14.2"; chr17_JH159146v1_alt rmsk exon 237117 237611 3101 + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1035"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17_JH159146v1_alt rmsk exon 237625 238133 1868 + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1035"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "-6039"; repStart "12"; chr17_JH159146v1_alt rmsk exon 238147 238207 286 + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1035"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "627"; chr17_JH159146v1_alt rmsk exon 238195 238281 380 + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1035"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr17_JH159146v1_alt rmsk exon 238359 238598 911 + . gene_id "MER4_17_JH159146v1_alt(a)"; transcript_id "MER4_17_JH159146v1_alt(a)"; locus "MER4_17_JH159146v1_alt(a)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1035"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4230"; repStart "2121"; ### MER4_17_JH159146v1_alt(b) ### chr17_JH159146v1_alt rmsk gene 238679 245421 . + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1036"; model_cov "4646"; model_pct "70.4"; chr17_JH159146v1_alt rmsk exon 238679 238837 1027 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "-6407"; repStart "34"; chr17_JH159146v1_alt rmsk exon 238835 239048 1428 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "477"; chr17_JH159146v1_alt rmsk exon 239779 239977 1342 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "985"; repFamily "ERV1"; repLeft "-5613"; repStart "782"; chr17_JH159146v1_alt rmsk exon 240037 240724 4084 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr17_JH159146v1_alt rmsk exon 240864 241383 1710 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "3091"; chr17_JH159146v1_alt rmsk exon 241383 243284 10768 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "5865"; repFamily "ERV1"; repLeft "-733"; repStart "3837"; chr17_JH159146v1_alt rmsk exon 244247 244960 10768 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1036"; repClass "LTR"; repEnd "6593"; repFamily "ERV1"; repLeft "-5"; repStart "5866"; chr17_JH159146v1_alt rmsk exon 244972 245421 3229 + . gene_id "MER4_17_JH159146v1_alt(b)"; transcript_id "MER4_17_JH159146v1_alt(b)"; locus "MER4_17_JH159146v1_alt(b)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1036"; repClass "LTR"; repEnd "470"; repFamily "ERV1"; repLeft "-2"; repStart "1"; ### MER4_17_JH159146v1_alt(c) ### chr17_JH159146v1_alt rmsk gene 257171 258659 . + . gene_id "MER4_17_JH159146v1_alt(c)"; transcript_id "MER4_17_JH159146v1_alt(c)"; locus "MER4_17_JH159146v1_alt(c)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1037"; model_cov "1018"; model_pct "15.4"; chr17_JH159146v1_alt rmsk exon 257171 257641 3302 + . gene_id "MER4_17_JH159146v1_alt(c)"; transcript_id "MER4_17_JH159146v1_alt(c)"; locus "MER4_17_JH159146v1_alt(c)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1037"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr17_JH159146v1_alt rmsk exon 257645 258268 1385 + . gene_id "MER4_17_JH159146v1_alt(c)"; transcript_id "MER4_17_JH159146v1_alt(c)"; locus "MER4_17_JH159146v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1037"; repClass "LTR"; repEnd "686"; repFamily "ERV1"; repLeft "-5912"; repStart "1"; chr17_JH159146v1_alt rmsk exon 258256 258342 347 + . gene_id "MER4_17_JH159146v1_alt(c)"; transcript_id "MER4_17_JH159146v1_alt(c)"; locus "MER4_17_JH159146v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1037"; repClass "LTR"; repEnd "-639"; repFamily "ERV1"; repLeft "-7237"; repStart "-722"; chr17_JH159146v1_alt rmsk exon 258417 258659 954 + . gene_id "MER4_17_JH159146v1_alt(c)"; transcript_id "MER4_17_JH159146v1_alt(c)"; locus "MER4_17_JH159146v1_alt(c)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1037"; repClass "LTR"; repEnd "2368"; repFamily "ERV1"; repLeft "-4230"; repStart "2118"; ### MER4_17_JH159146v1_alt(d) ### chr17_JH159146v1_alt rmsk gene 258740 265804 . + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1038"; model_cov "4843"; model_pct "73.4"; chr17_JH159146v1_alt rmsk exon 258740 258898 997 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "191"; repFamily "ERV1"; repLeft "-6407"; repStart "34"; chr17_JH159146v1_alt rmsk exon 258896 259109 1414 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "687"; repFamily "ERV1"; repLeft "-5911"; repStart "477"; chr17_JH159146v1_alt rmsk exon 259885 260086 1289 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "988"; repFamily "ERV1"; repLeft "-5610"; repStart "782"; chr17_JH159146v1_alt rmsk exon 260149 260836 3938 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "2495"; repFamily "ERV1"; repLeft "-4103"; repStart "1764"; chr17_JH159146v1_alt rmsk exon 261076 261128 412 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "-3809"; repStart "2737"; chr17_JH159146v1_alt rmsk exon 261128 261780 1833 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "3681"; repFamily "ERV1"; repLeft "-2917"; repStart "2954"; chr17_JH159146v1_alt rmsk exon 261780 263671 11034 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "5865"; repFamily "ERV1"; repLeft "-733"; repStart "3837"; chr17_JH159146v1_alt rmsk exon 264633 265352 11034 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1038"; repClass "LTR"; repEnd "6598"; repFamily "ERV1"; repLeft "0"; repStart "5866"; chr17_JH159146v1_alt rmsk exon 265356 265804 3338 + . gene_id "MER4_17_JH159146v1_alt(d)"; transcript_id "MER4_17_JH159146v1_alt(d)"; locus "MER4_17_JH159146v1_alt(d)"; repName "MER4A1"; geneRegion "ltr"; locid "MER4-int_1038"; repClass "LTR"; repEnd "472"; repFamily "ERV1"; repLeft "0"; repStart "3"; ### HUERSP2_17_KI270857v1_alt ### chr17_KI270857v1_alt rmsk gene 242400 247156 . + . gene_id "HUERSP2_17_KI270857v1_alt"; transcript_id "HUERSP2_17_KI270857v1_alt"; locus "HUERSP2_17_KI270857v1_alt"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0140"; model_cov "3222"; model_pct "100.0"; chr17_KI270857v1_alt rmsk exon 242400 243261 3681 + . gene_id "HUERSP2_17_KI270857v1_alt"; transcript_id "HUERSP2_17_KI270857v1_alt"; locus "HUERSP2_17_KI270857v1_alt"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0140"; repClass "LTR"; repEnd "772"; repFamily "ERV1"; repLeft "0"; repStart "-51"; chr17_KI270857v1_alt rmsk exon 243263 246000 15644 + . gene_id "HUERSP2_17_KI270857v1_alt"; transcript_id "HUERSP2_17_KI270857v1_alt"; locus "HUERSP2_17_KI270857v1_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0140"; repClass "LTR"; repEnd "2801"; repFamily "ERV1"; repLeft "-287"; repStart "2"; chr17_KI270857v1_alt rmsk exon 246001 246416 2566 + . gene_id "HUERSP2_17_KI270857v1_alt"; transcript_id "HUERSP2_17_KI270857v1_alt"; locus "HUERSP2_17_KI270857v1_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0140"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "2665"; chr17_KI270857v1_alt rmsk exon 246417 247156 4937 + . gene_id "HUERSP2_17_KI270857v1_alt"; transcript_id "HUERSP2_17_KI270857v1_alt"; locus "HUERSP2_17_KI270857v1_alt"; repName "LTR1F"; geneRegion "ltr"; locid "HUERS-P2-int_0140"; repClass "LTR"; repEnd "765"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### ERV316A3_17_KI270857v1_alt ### chr17_KI270857v1_alt rmsk gene 296286 298057 . + . gene_id "ERV316A3_17_KI270857v1_alt"; transcript_id "ERV316A3_17_KI270857v1_alt"; locus "ERV316A3_17_KI270857v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3037"; model_cov "1425"; model_pct "27.3"; chr17_KI270857v1_alt rmsk exon 296286 297038 2871 + . gene_id "ERV316A3_17_KI270857v1_alt"; transcript_id "ERV316A3_17_KI270857v1_alt"; locus "ERV316A3_17_KI270857v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3037"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "-3697"; repStart "800"; chr17_KI270857v1_alt rmsk exon 297034 297609 2162 + . gene_id "ERV316A3_17_KI270857v1_alt"; transcript_id "ERV316A3_17_KI270857v1_alt"; locus "ERV316A3_17_KI270857v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3037"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "-2594"; repStart "2049"; chr17_KI270857v1_alt rmsk exon 297920 298057 2162 + . gene_id "ERV316A3_17_KI270857v1_alt"; transcript_id "ERV316A3_17_KI270857v1_alt"; locus "ERV316A3_17_KI270857v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3037"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "2633"; ### HERVL_17_KI270857v1_alt(a) ### chr17_KI270857v1_alt rmsk gene 346415 351265 . + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1497"; model_cov "4032"; model_pct "71.3"; chr17_KI270857v1_alt rmsk exon 346415 346664 1697 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "1"; chr17_KI270857v1_alt rmsk exon 346662 346760 544 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "350"; chr17_KI270857v1_alt rmsk exon 346761 348134 6974 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "-4405"; repStart "-102"; chr17_KI270857v1_alt rmsk exon 348133 350269 17702 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "4663"; repFamily "ERVL"; repLeft "-991"; repStart "2491"; chr17_KI270857v1_alt rmsk exon 350267 350785 3931 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5145"; chr17_KI270857v1_alt rmsk exon 350786 351167 3021 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr17_KI270857v1_alt rmsk exon 351226 351265 3021 + . gene_id "HERVL_17_KI270857v1_alt(a)"; transcript_id "HERVL_17_KI270857v1_alt(a)"; locus "HERVL_17_KI270857v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1497"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "400"; ### ERVLB4_17_KI270857v1_alt ### chr17_KI270857v1_alt rmsk gene 366849 367816 . + . gene_id "ERVLB4_17_KI270857v1_alt"; transcript_id "ERVLB4_17_KI270857v1_alt"; locus "ERVLB4_17_KI270857v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2046"; model_cov "958"; model_pct "16.8"; chr17_KI270857v1_alt rmsk exon 366849 367268 920 + . gene_id "ERVLB4_17_KI270857v1_alt"; transcript_id "ERVLB4_17_KI270857v1_alt"; locus "ERVLB4_17_KI270857v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2046"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "-2879"; repStart "2412"; chr17_KI270857v1_alt rmsk exon 367318 367816 1075 + . gene_id "ERVLB4_17_KI270857v1_alt"; transcript_id "ERVLB4_17_KI270857v1_alt"; locus "ERVLB4_17_KI270857v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2046"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-2138"; repStart "3041"; ### ERVLE_17_KI270857v1_alt ### chr17_KI270857v1_alt rmsk gene 377972 379566 . + . gene_id "ERVLE_17_KI270857v1_alt"; transcript_id "ERVLE_17_KI270857v1_alt"; locus "ERVLE_17_KI270857v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3945"; model_cov "1444"; model_pct "25.5"; chr17_KI270857v1_alt rmsk exon 377972 378329 931 + . gene_id "ERVLE_17_KI270857v1_alt"; transcript_id "ERVLE_17_KI270857v1_alt"; locus "ERVLE_17_KI270857v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3945"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-5275"; repStart "19"; chr17_KI270857v1_alt rmsk exon 378384 378842 566 + . gene_id "ERVLE_17_KI270857v1_alt"; transcript_id "ERVLE_17_KI270857v1_alt"; locus "ERVLE_17_KI270857v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3945"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-4704"; repStart "491"; chr17_KI270857v1_alt rmsk exon 378970 379566 1736 + . gene_id "ERVLE_17_KI270857v1_alt"; transcript_id "ERVLE_17_KI270857v1_alt"; locus "ERVLE_17_KI270857v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3945"; repClass "LTR"; repEnd "2208"; repFamily "ERVL"; repLeft "-3459"; repStart "1609"; ### HERVL_17_KI270857v1_alt(b) ### chr17_KI270857v1_alt rmsk gene 452226 457390 . + . gene_id "HERVL_17_KI270857v1_alt(b)"; transcript_id "HERVL_17_KI270857v1_alt(b)"; locus "HERVL_17_KI270857v1_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1498"; model_cov "4756"; model_pct "84.1"; chr17_KI270857v1_alt rmsk exon 452226 452283 365 + . gene_id "HERVL_17_KI270857v1_alt(b)"; transcript_id "HERVL_17_KI270857v1_alt(b)"; locus "HERVL_17_KI270857v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1498"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "202"; chr17_KI270857v1_alt rmsk exon 452281 452326 247 + . gene_id "HERVL_17_KI270857v1_alt(b)"; transcript_id "HERVL_17_KI270857v1_alt(b)"; locus "HERVL_17_KI270857v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1498"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "350"; chr17_KI270857v1_alt rmsk exon 452591 457390 35966 + . gene_id "HERVL_17_KI270857v1_alt(b)"; transcript_id "HERVL_17_KI270857v1_alt(b)"; locus "HERVL_17_KI270857v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1498"; repClass "LTR"; repEnd "4757"; repFamily "ERVL"; repLeft "-897"; repStart "1"; ### HERVW_17_KI270857v1_alt ### chr17_KI270857v1_alt rmsk gene 1568955 1572687 . + . gene_id "HERVW_17_KI270857v1_alt"; transcript_id "HERVW_17_KI270857v1_alt"; locus "HERVW_17_KI270857v1_alt"; category "oneside"; intModel "HERV17-int"; locid "HERV17-int_0331"; model_cov "3406"; model_pct "39.5"; chr17_KI270857v1_alt rmsk exon 1568955 1572361 28712 + . gene_id "HERVW_17_KI270857v1_alt"; transcript_id "HERVW_17_KI270857v1_alt"; locus "HERVW_17_KI270857v1_alt"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0331"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "0"; repStart "5220"; chr17_KI270857v1_alt rmsk exon 1572362 1572687 2705 + . gene_id "HERVW_17_KI270857v1_alt"; transcript_id "HERVW_17_KI270857v1_alt"; locus "HERVW_17_KI270857v1_alt"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0331"; repClass "LTR"; repEnd "326"; repFamily "ERV1"; repLeft "-454"; repStart "1"; ### ERVLB4_17_KI270860v1_alt ### chr17_KI270860v1_alt rmsk gene 82657 83252 . - . gene_id "ERVLB4_17_KI270860v1_alt"; transcript_id "ERVLB4_17_KI270860v1_alt"; locus "ERVLB4_17_KI270860v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2048"; model_cov "619"; model_pct "10.8"; chr17_KI270860v1_alt rmsk exon 82657 83252 2272 - . gene_id "ERVLB4_17_KI270860v1_alt"; transcript_id "ERVLB4_17_KI270860v1_alt"; locus "ERVLB4_17_KI270860v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2048"; repClass "LTR"; repEnd "5094"; repFamily "ERVL"; repLeft "4475"; repStart "-620"; ### ERVLB4_17_KI270862v1_alt(a) ### chr17_KI270862v1_alt rmsk gene 25338 26617 . - . gene_id "ERVLB4_17_KI270862v1_alt(a)"; transcript_id "ERVLB4_17_KI270862v1_alt(a)"; locus "ERVLB4_17_KI270862v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2049"; model_cov "1179"; model_pct "20.6"; chr17_KI270862v1_alt rmsk exon 25338 26456 6610 - . gene_id "ERVLB4_17_KI270862v1_alt(a)"; transcript_id "ERVLB4_17_KI270862v1_alt(a)"; locus "ERVLB4_17_KI270862v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2049"; repClass "LTR"; repEnd "5392"; repFamily "ERVL"; repLeft "4253"; repStart "-322"; chr17_KI270862v1_alt rmsk exon 26577 26617 258 - . gene_id "ERVLB4_17_KI270862v1_alt(a)"; transcript_id "ERVLB4_17_KI270862v1_alt(a)"; locus "ERVLB4_17_KI270862v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2049"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "4253"; repStart "-1421"; ### ERVLB4_17_KI270862v1_alt(b) ### chr17_KI270862v1_alt rmsk gene 26841 28201 . - . gene_id "ERVLB4_17_KI270862v1_alt(b)"; transcript_id "ERVLB4_17_KI270862v1_alt(b)"; locus "ERVLB4_17_KI270862v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2051"; model_cov "1276"; model_pct "22.3"; chr17_KI270862v1_alt rmsk exon 26841 28111 6712 - . gene_id "ERVLB4_17_KI270862v1_alt(b)"; transcript_id "ERVLB4_17_KI270862v1_alt(b)"; locus "ERVLB4_17_KI270862v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2051"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "3017"; repStart "-1421"; chr17_KI270862v1_alt rmsk exon 28116 28201 308 - . gene_id "ERVLB4_17_KI270862v1_alt(b)"; transcript_id "ERVLB4_17_KI270862v1_alt(b)"; locus "ERVLB4_17_KI270862v1_alt(b)"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_2051"; repClass "LTR"; repEnd "80"; repFamily "ERVL"; repLeft "1"; repStart "-476"; ### ERV316A3_17_KI270908v1_alt ### chr17_KI270908v1_alt rmsk gene 579957 590943 . - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3038"; model_cov "4149"; model_pct "79.4"; chr17_KI270908v1_alt rmsk exon 579957 580258 1211 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "4895"; repFamily "ERVL"; repLeft "4581"; repStart "-331"; chr17_KI270908v1_alt rmsk exon 582639 582760 389 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "4416"; repFamily "ERVL"; repLeft "4296"; repStart "-810"; chr17_KI270908v1_alt rmsk exon 583673 584357 5867 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "4195"; repFamily "ERVL"; repLeft "3323"; repStart "-1031"; chr17_KI270908v1_alt rmsk exon 584661 585937 5867 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "3763"; repFamily "ERVL"; repLeft "2507"; repStart "-1463"; chr17_KI270908v1_alt rmsk exon 587601 588043 1326 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "2372"; repFamily "ERVL"; repLeft "1769"; repStart "-2854"; chr17_KI270908v1_alt rmsk exon 588352 588490 1326 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "1538"; repFamily "ERVL"; repLeft "1408"; repStart "-3688"; chr17_KI270908v1_alt rmsk exon 589033 589157 2020 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "1413"; repFamily "ERVL"; repLeft "1287"; repStart "-3813"; chr17_KI270908v1_alt rmsk exon 589479 589698 2020 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "1286"; repFamily "ERVL"; repLeft "1070"; repStart "-3940"; chr17_KI270908v1_alt rmsk exon 590026 590353 2020 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "1069"; repFamily "ERVL"; repLeft "728"; repStart "-4157"; chr17_KI270908v1_alt rmsk exon 590407 590562 897 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "872"; repFamily "ERVL"; repLeft "721"; repStart "-4354"; chr17_KI270908v1_alt rmsk exon 590922 590943 897 - . gene_id "ERV316A3_17_KI270908v1_alt"; transcript_id "ERV316A3_17_KI270908v1_alt"; locus "ERV316A3_17_KI270908v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3038"; repClass "LTR"; repEnd "720"; repFamily "ERVL"; repLeft "700"; repStart "-4506"; ### ERV316A3_17_KI270909v1_alt ### chr17_KI270909v1_alt rmsk gene 15496 17266 . + . gene_id "ERV316A3_17_KI270909v1_alt"; transcript_id "ERV316A3_17_KI270909v1_alt"; locus "ERV316A3_17_KI270909v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3039"; model_cov "1425"; model_pct "27.3"; chr17_KI270909v1_alt rmsk exon 15496 16247 2852 + . gene_id "ERV316A3_17_KI270909v1_alt"; transcript_id "ERV316A3_17_KI270909v1_alt"; locus "ERV316A3_17_KI270909v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3039"; repClass "LTR"; repEnd "1529"; repFamily "ERVL"; repLeft "-3697"; repStart "800"; chr17_KI270909v1_alt rmsk exon 16243 16818 2147 + . gene_id "ERV316A3_17_KI270909v1_alt"; transcript_id "ERV316A3_17_KI270909v1_alt"; locus "ERV316A3_17_KI270909v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3039"; repClass "LTR"; repEnd "2632"; repFamily "ERVL"; repLeft "-2594"; repStart "2049"; chr17_KI270909v1_alt rmsk exon 17129 17266 2147 + . gene_id "ERV316A3_17_KI270909v1_alt"; transcript_id "ERV316A3_17_KI270909v1_alt"; locus "ERV316A3_17_KI270909v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3039"; repClass "LTR"; repEnd "2746"; repFamily "ERVL"; repLeft "-2480"; repStart "2633"; ### HERVL_17_KI270909v1_alt(a) ### chr17_KI270909v1_alt rmsk gene 65591 70441 . + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1499"; model_cov "4032"; model_pct "71.3"; chr17_KI270909v1_alt rmsk exon 65591 65840 1697 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "1"; chr17_KI270909v1_alt rmsk exon 65838 65936 544 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "350"; chr17_KI270909v1_alt rmsk exon 65937 67310 6974 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "1249"; repFamily "ERVL"; repLeft "-4405"; repStart "-102"; chr17_KI270909v1_alt rmsk exon 67309 69445 17706 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "4663"; repFamily "ERVL"; repLeft "-991"; repStart "2491"; chr17_KI270909v1_alt rmsk exon 69443 69961 3915 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "0"; repStart "5145"; chr17_KI270909v1_alt rmsk exon 69962 70343 3004 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "399"; repFamily "ERVL"; repLeft "-45"; repStart "1"; chr17_KI270909v1_alt rmsk exon 70402 70441 3004 + . gene_id "HERVL_17_KI270909v1_alt(a)"; transcript_id "HERVL_17_KI270909v1_alt(a)"; locus "HERVL_17_KI270909v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1499"; repClass "LTR"; repEnd "443"; repFamily "ERVL"; repLeft "-1"; repStart "400"; ### ERVLB4_17_KI270909v1_alt ### chr17_KI270909v1_alt rmsk gene 86036 87003 . + . gene_id "ERVLB4_17_KI270909v1_alt"; transcript_id "ERVLB4_17_KI270909v1_alt"; locus "ERVLB4_17_KI270909v1_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2053"; model_cov "958"; model_pct "16.8"; chr17_KI270909v1_alt rmsk exon 86036 86455 920 + . gene_id "ERVLB4_17_KI270909v1_alt"; transcript_id "ERVLB4_17_KI270909v1_alt"; locus "ERVLB4_17_KI270909v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2053"; repClass "LTR"; repEnd "2835"; repFamily "ERVL"; repLeft "-2879"; repStart "2412"; chr17_KI270909v1_alt rmsk exon 86505 87003 1057 + . gene_id "ERVLB4_17_KI270909v1_alt"; transcript_id "ERVLB4_17_KI270909v1_alt"; locus "ERVLB4_17_KI270909v1_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2053"; repClass "LTR"; repEnd "3576"; repFamily "ERVL"; repLeft "-2138"; repStart "3041"; ### ERVLE_17_KI270909v1_alt ### chr17_KI270909v1_alt rmsk gene 97156 98750 . + . gene_id "ERVLE_17_KI270909v1_alt"; transcript_id "ERVLE_17_KI270909v1_alt"; locus "ERVLE_17_KI270909v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3949"; model_cov "1444"; model_pct "25.5"; chr17_KI270909v1_alt rmsk exon 97156 97513 931 + . gene_id "ERVLE_17_KI270909v1_alt"; transcript_id "ERVLE_17_KI270909v1_alt"; locus "ERVLE_17_KI270909v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3949"; repClass "LTR"; repEnd "392"; repFamily "ERVL"; repLeft "-5275"; repStart "19"; chr17_KI270909v1_alt rmsk exon 97568 98026 566 + . gene_id "ERVLE_17_KI270909v1_alt"; transcript_id "ERVLE_17_KI270909v1_alt"; locus "ERVLE_17_KI270909v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3949"; repClass "LTR"; repEnd "963"; repFamily "ERVL"; repLeft "-4704"; repStart "491"; chr17_KI270909v1_alt rmsk exon 98154 98750 1718 + . gene_id "ERVLE_17_KI270909v1_alt"; transcript_id "ERVLE_17_KI270909v1_alt"; locus "ERVLE_17_KI270909v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3949"; repClass "LTR"; repEnd "2208"; repFamily "ERVL"; repLeft "-3459"; repStart "1609"; ### HERVL_17_KI270909v1_alt(b) ### chr17_KI270909v1_alt rmsk gene 171511 176661 . + . gene_id "HERVL_17_KI270909v1_alt(b)"; transcript_id "HERVL_17_KI270909v1_alt(b)"; locus "HERVL_17_KI270909v1_alt(b)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1500"; model_cov "4752"; model_pct "84.0"; chr17_KI270909v1_alt rmsk exon 171511 171568 365 + . gene_id "HERVL_17_KI270909v1_alt(b)"; transcript_id "HERVL_17_KI270909v1_alt(b)"; locus "HERVL_17_KI270909v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1500"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "202"; chr17_KI270909v1_alt rmsk exon 171566 171611 247 + . gene_id "HERVL_17_KI270909v1_alt(b)"; transcript_id "HERVL_17_KI270909v1_alt(b)"; locus "HERVL_17_KI270909v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1500"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "350"; chr17_KI270909v1_alt rmsk exon 171866 176661 35997 + . gene_id "HERVL_17_KI270909v1_alt(b)"; transcript_id "HERVL_17_KI270909v1_alt(b)"; locus "HERVL_17_KI270909v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1500"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "-901"; repStart "1"; ### HERVL_17_KI270909v1_alt(c) ### chr17_KI270909v1_alt rmsk gene 273078 278228 . + . gene_id "HERVL_17_KI270909v1_alt(c)"; transcript_id "HERVL_17_KI270909v1_alt(c)"; locus "HERVL_17_KI270909v1_alt(c)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1501"; model_cov "4752"; model_pct "84.0"; chr17_KI270909v1_alt rmsk exon 273078 273135 365 + . gene_id "HERVL_17_KI270909v1_alt(c)"; transcript_id "HERVL_17_KI270909v1_alt(c)"; locus "HERVL_17_KI270909v1_alt(c)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1501"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-184"; repStart "202"; chr17_KI270909v1_alt rmsk exon 273133 273178 247 + . gene_id "HERVL_17_KI270909v1_alt(c)"; transcript_id "HERVL_17_KI270909v1_alt(c)"; locus "HERVL_17_KI270909v1_alt(c)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1501"; repClass "LTR"; repEnd "400"; repFamily "ERVL"; repLeft "-44"; repStart "350"; chr17_KI270909v1_alt rmsk exon 273433 278228 35997 + . gene_id "HERVL_17_KI270909v1_alt(c)"; transcript_id "HERVL_17_KI270909v1_alt(c)"; locus "HERVL_17_KI270909v1_alt(c)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1501"; repClass "LTR"; repEnd "4753"; repFamily "ERVL"; repLeft "-901"; repStart "1"; ### ERVLB4_17_KI270910v1_alt(a) ### chr17_KI270910v1_alt rmsk gene 25338 26617 . - . gene_id "ERVLB4_17_KI270910v1_alt(a)"; transcript_id "ERVLB4_17_KI270910v1_alt(a)"; locus "ERVLB4_17_KI270910v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2054"; model_cov "1179"; model_pct "20.6"; chr17_KI270910v1_alt rmsk exon 25338 26456 6610 - . gene_id "ERVLB4_17_KI270910v1_alt(a)"; transcript_id "ERVLB4_17_KI270910v1_alt(a)"; locus "ERVLB4_17_KI270910v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2054"; repClass "LTR"; repEnd "5392"; repFamily "ERVL"; repLeft "4253"; repStart "-322"; chr17_KI270910v1_alt rmsk exon 26577 26617 258 - . gene_id "ERVLB4_17_KI270910v1_alt(a)"; transcript_id "ERVLB4_17_KI270910v1_alt(a)"; locus "ERVLB4_17_KI270910v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2054"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "4253"; repStart "-1421"; ### ERVLB4_17_KI270910v1_alt(b) ### chr17_KI270910v1_alt rmsk gene 26841 28201 . - . gene_id "ERVLB4_17_KI270910v1_alt(b)"; transcript_id "ERVLB4_17_KI270910v1_alt(b)"; locus "ERVLB4_17_KI270910v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2056"; model_cov "1276"; model_pct "22.3"; chr17_KI270910v1_alt rmsk exon 26841 28111 6712 - . gene_id "ERVLB4_17_KI270910v1_alt(b)"; transcript_id "ERVLB4_17_KI270910v1_alt(b)"; locus "ERVLB4_17_KI270910v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2056"; repClass "LTR"; repEnd "4293"; repFamily "ERVL"; repLeft "3017"; repStart "-1421"; chr17_KI270910v1_alt rmsk exon 28116 28201 308 - . gene_id "ERVLB4_17_KI270910v1_alt(b)"; transcript_id "ERVLB4_17_KI270910v1_alt(b)"; locus "ERVLB4_17_KI270910v1_alt(b)"; repName "MLT2B4"; geneRegion "ltr"; locid "ERVL-B4-int_2056"; repClass "LTR"; repEnd "80"; repFamily "ERVL"; repLeft "1"; repStart "-476"; ### HERVS71_18_GL383567v1_alt ### chr18_GL383567v1_alt rmsk gene 108258 116537 . + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0073"; model_cov "6475"; model_pct "72.1"; chr18_GL383567v1_alt rmsk exon 108258 108813 4704 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr18_GL383567v1_alt rmsk exon 108816 112001 14193 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "3400"; repFamily "ERV1"; repLeft "-5578"; repStart "4"; chr18_GL383567v1_alt rmsk exon 112979 113085 14193 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "3501"; repFamily "ERV1"; repLeft "-5477"; repStart "3401"; chr18_GL383567v1_alt rmsk exon 113079 115693 9929 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "7668"; repFamily "ERV1"; repLeft "-1310"; repStart "4977"; chr18_GL383567v1_alt rmsk exon 115685 115973 1803 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "-69"; repStart "8621"; chr18_GL383567v1_alt rmsk exon 115974 116537 4778 + . gene_id "HERVS71_18_GL383567v1_alt"; transcript_id "HERVS71_18_GL383567v1_alt"; locus "HERVS71_18_GL383567v1_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0073"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### ERVLE_18_GL383567v1_alt ### chr18_GL383567v1_alt rmsk gene 153602 155291 . - . gene_id "ERVLE_18_GL383567v1_alt"; transcript_id "ERVLE_18_GL383567v1_alt"; locus "ERVLE_18_GL383567v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3951"; model_cov "1067"; model_pct "18.8"; chr18_GL383567v1_alt rmsk exon 153602 153809 574 - . gene_id "ERVLE_18_GL383567v1_alt"; transcript_id "ERVLE_18_GL383567v1_alt"; locus "ERVLE_18_GL383567v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3951"; repClass "LTR"; repEnd "2176"; repFamily "ERVL"; repLeft "1967"; repStart "-3491"; chr18_GL383567v1_alt rmsk exon 153822 153941 1333 - . gene_id "ERVLE_18_GL383567v1_alt"; transcript_id "ERVLE_18_GL383567v1_alt"; locus "ERVLE_18_GL383567v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3951"; repClass "LTR"; repEnd "1802"; repFamily "ERVL"; repLeft "1675"; repStart "-3865"; chr18_GL383567v1_alt rmsk exon 154411 154927 1333 - . gene_id "ERVLE_18_GL383567v1_alt"; transcript_id "ERVLE_18_GL383567v1_alt"; locus "ERVLE_18_GL383567v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3951"; repClass "LTR"; repEnd "1674"; repFamily "ERVL"; repLeft "1146"; repStart "-3993"; chr18_GL383567v1_alt rmsk exon 155082 155291 1333 - . gene_id "ERVLE_18_GL383567v1_alt"; transcript_id "ERVLE_18_GL383567v1_alt"; locus "ERVLE_18_GL383567v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3951"; repClass "LTR"; repEnd "1145"; repFamily "ERVL"; repLeft "942"; repStart "-4522"; ### HERVW_18_GL383567v1_alt ### chr18_GL383567v1_alt rmsk gene 156974 164931 . - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; category "prototype"; intModel "HERV17-int"; locid "HERV17-int_0332"; model_cov "6296"; model_pct "73.0"; chr18_GL383567v1_alt rmsk exon 156974 157737 5898 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18_GL383567v1_alt rmsk exon 157738 159518 15173 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "8626"; repFamily "ERV1"; repLeft "6841"; repStart "0"; chr18_GL383567v1_alt rmsk exon 159512 163140 35869 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "4504"; repFamily "ERV1"; repLeft "855"; repStart "-4122"; chr18_GL383567v1_alt rmsk exon 163193 163910 35869 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "854"; repFamily "ERV1"; repLeft "126"; repStart "-7772"; chr18_GL383567v1_alt rmsk exon 164056 164190 1089 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "HERV17-int"; geneRegion "internal"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "135"; repFamily "ERV1"; repLeft "1"; repStart "-8491"; chr18_GL383567v1_alt rmsk exon 164191 164931 5705 - . gene_id "HERVW_18_GL383567v1_alt"; transcript_id "HERVW_18_GL383567v1_alt"; locus "HERVW_18_GL383567v1_alt"; repName "LTR17"; geneRegion "ltr"; locid "HERV17-int_0332"; repClass "LTR"; repEnd "780"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### MER41_18_GL383567v1_alt ### chr18_GL383567v1_alt rmsk gene 258721 260161 . + . gene_id "MER41_18_GL383567v1_alt"; transcript_id "MER41_18_GL383567v1_alt"; locus "MER41_18_GL383567v1_alt"; category "oneside"; intModel "MER41-int"; locid "MER41-int_0670"; model_cov "900"; model_pct "15.1"; chr18_GL383567v1_alt rmsk exon 258721 259616 6513 + . gene_id "MER41_18_GL383567v1_alt"; transcript_id "MER41_18_GL383567v1_alt"; locus "MER41_18_GL383567v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0670"; repClass "LTR"; repEnd "5907"; repFamily "ERV1"; repLeft "-39"; repStart "5007"; chr18_GL383567v1_alt rmsk exon 259618 260161 4214 + . gene_id "MER41_18_GL383567v1_alt"; transcript_id "MER41_18_GL383567v1_alt"; locus "MER41_18_GL383567v1_alt"; repName "MER41B"; geneRegion "ltr"; locid "MER41-int_0670"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "-87"; repStart "1"; ### ERVLE_18_GL383568v1_alt(a) ### chr18_GL383568v1_alt rmsk gene 63348 64225 . - . gene_id "ERVLE_18_GL383568v1_alt(a)"; transcript_id "ERVLE_18_GL383568v1_alt(a)"; locus "ERVLE_18_GL383568v1_alt(a)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3952"; model_cov "913"; model_pct "16.1"; chr18_GL383568v1_alt rmsk exon 63348 64225 2884 - . gene_id "ERVLE_18_GL383568v1_alt(a)"; transcript_id "ERVLE_18_GL383568v1_alt(a)"; locus "ERVLE_18_GL383568v1_alt(a)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3952"; repClass "LTR"; repEnd "3832"; repFamily "ERVL"; repLeft "2919"; repStart "-1835"; ### ERVLE_18_GL383568v1_alt(b) ### chr18_GL383568v1_alt rmsk gene 73139 74876 . - . gene_id "ERVLE_18_GL383568v1_alt(b)"; transcript_id "ERVLE_18_GL383568v1_alt(b)"; locus "ERVLE_18_GL383568v1_alt(b)"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3953"; model_cov "1139"; model_pct "20.1"; chr18_GL383568v1_alt rmsk exon 73139 73270 307 - . gene_id "ERVLE_18_GL383568v1_alt(b)"; transcript_id "ERVLE_18_GL383568v1_alt(b)"; locus "ERVLE_18_GL383568v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3953"; repClass "LTR"; repEnd "5562"; repFamily "ERVL"; repLeft "5433"; repStart "-105"; chr18_GL383568v1_alt rmsk exon 73874 74042 328 - . gene_id "ERVLE_18_GL383568v1_alt(b)"; transcript_id "ERVLE_18_GL383568v1_alt(b)"; locus "ERVLE_18_GL383568v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3953"; repClass "LTR"; repEnd "4367"; repFamily "ERVL"; repLeft "4174"; repStart "-1300"; chr18_GL383568v1_alt rmsk exon 74044 74876 679 - . gene_id "ERVLE_18_GL383568v1_alt(b)"; transcript_id "ERVLE_18_GL383568v1_alt(b)"; locus "ERVLE_18_GL383568v1_alt(b)"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3953"; repClass "LTR"; repEnd "3874"; repFamily "ERVL"; repLeft "3057"; repStart "-1793"; ### HERVH48_18_GL383570v1_alt(a) ### chr18_GL383570v1_alt rmsk gene 111459 114909 . - . gene_id "HERVH48_18_GL383570v1_alt(a)"; transcript_id "HERVH48_18_GL383570v1_alt(a)"; locus "HERVH48_18_GL383570v1_alt(a)"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0059"; model_cov "3135"; model_pct "47.1"; chr18_GL383570v1_alt rmsk exon 111459 111845 2968 - . gene_id "HERVH48_18_GL383570v1_alt(a)"; transcript_id "HERVH48_18_GL383570v1_alt(a)"; locus "HERVH48_18_GL383570v1_alt(a)"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0059"; repClass "LTR"; repEnd "407"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr18_GL383570v1_alt rmsk exon 111846 114909 22079 - . gene_id "HERVH48_18_GL383570v1_alt(a)"; transcript_id "HERVH48_18_GL383570v1_alt(a)"; locus "HERVH48_18_GL383570v1_alt(a)"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0059"; repClass "LTR"; repEnd "6654"; repFamily "ERV1"; repLeft "3519"; repStart "0"; ### HERVH48_18_GL383570v1_alt(b) ### chr18_GL383570v1_alt rmsk gene 121748 125026 . - . gene_id "HERVH48_18_GL383570v1_alt(b)"; transcript_id "HERVH48_18_GL383570v1_alt(b)"; locus "HERVH48_18_GL383570v1_alt(b)"; category "oneside"; intModel "HERVH48-int"; locid "HERVH48-int_0060"; model_cov "2918"; model_pct "43.9"; chr18_GL383570v1_alt rmsk exon 121748 123458 11775 - . gene_id "HERVH48_18_GL383570v1_alt(b)"; transcript_id "HERVH48_18_GL383570v1_alt(b)"; locus "HERVH48_18_GL383570v1_alt(b)"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0060"; repClass "LTR"; repEnd "3536"; repFamily "ERV1"; repLeft "1809"; repStart "-3118"; chr18_GL383570v1_alt rmsk exon 123466 124639 7789 - . gene_id "HERVH48_18_GL383570v1_alt(b)"; transcript_id "HERVH48_18_GL383570v1_alt(b)"; locus "HERVH48_18_GL383570v1_alt(b)"; repName "HERVH48-int"; geneRegion "internal"; locid "HERVH48-int_0060"; repClass "LTR"; repEnd "1192"; repFamily "ERV1"; repLeft "1"; repStart "-5462"; chr18_GL383570v1_alt rmsk exon 124641 125026 3031 - . gene_id "HERVH48_18_GL383570v1_alt(b)"; transcript_id "HERVH48_18_GL383570v1_alt(b)"; locus "HERVH48_18_GL383570v1_alt(b)"; repName "MER48"; geneRegion "ltr"; locid "HERVH48-int_0060"; repClass "LTR"; repEnd "406"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### HERVL40_18_GL383571v1_alt ### chr18_GL383571v1_alt rmsk gene 2008 4011 . + . gene_id "HERVL40_18_GL383571v1_alt"; transcript_id "HERVL40_18_GL383571v1_alt"; locus "HERVL40_18_GL383571v1_alt"; category "oneside"; intModel "HERVL40-int"; locid "HERVL40-int_0512"; model_cov "1440"; model_pct "26.0"; chr18_GL383571v1_alt rmsk exon 2008 2391 1153 + . gene_id "HERVL40_18_GL383571v1_alt"; transcript_id "HERVL40_18_GL383571v1_alt"; locus "HERVL40_18_GL383571v1_alt"; repName "LTR40a"; geneRegion "ltr"; locid "HERVL40-int_0512"; repClass "LTR"; repEnd "519"; repFamily "ERVL"; repLeft "0"; repStart "111"; chr18_GL383571v1_alt rmsk exon 2393 2961 1283 + . gene_id "HERVL40_18_GL383571v1_alt"; transcript_id "HERVL40_18_GL383571v1_alt"; locus "HERVL40_18_GL383571v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0512"; repClass "LTR"; repEnd "571"; repFamily "ERVL"; repLeft "-4959"; repStart "1"; chr18_GL383571v1_alt rmsk exon 3051 3116 255 + . gene_id "HERVL40_18_GL383571v1_alt"; transcript_id "HERVL40_18_GL383571v1_alt"; locus "HERVL40_18_GL383571v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0512"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "-4867"; repStart "598"; chr18_GL383571v1_alt rmsk exon 3201 4011 1385 + . gene_id "HERVL40_18_GL383571v1_alt"; transcript_id "HERVL40_18_GL383571v1_alt"; locus "HERVL40_18_GL383571v1_alt"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0512"; repClass "LTR"; repEnd "1557"; repFamily "ERVL"; repLeft "-3973"; repStart "752"; ### ERV316A3_18_GL383571v1_alt ### chr18_GL383571v1_alt rmsk gene 37306 39569 . - . gene_id "ERV316A3_18_GL383571v1_alt"; transcript_id "ERV316A3_18_GL383571v1_alt"; locus "ERV316A3_18_GL383571v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3041"; model_cov "1895"; model_pct "36.3"; chr18_GL383571v1_alt rmsk exon 37306 38020 3869 - . gene_id "ERV316A3_18_GL383571v1_alt"; transcript_id "ERV316A3_18_GL383571v1_alt"; locus "ERV316A3_18_GL383571v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3041"; repClass "LTR"; repEnd "4632"; repFamily "ERVL"; repLeft "3934"; repStart "-594"; chr18_GL383571v1_alt rmsk exon 38388 39569 3869 - . gene_id "ERV316A3_18_GL383571v1_alt"; transcript_id "ERV316A3_18_GL383571v1_alt"; locus "ERV316A3_18_GL383571v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3041"; repClass "LTR"; repEnd "3933"; repFamily "ERVL"; repLeft "2736"; repStart "-1293"; ### ERVLE_18_GL383572v1_alt ### chr18_GL383572v1_alt rmsk gene 124263 127526 . - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3955"; model_cov "1493"; model_pct "26.3"; chr18_GL383572v1_alt rmsk exon 124263 124866 500 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18_GL383572v1_alt rmsk exon 124895 125024 325 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "5632"; repFamily "ERVL"; repLeft "5504"; repStart "-35"; chr18_GL383572v1_alt rmsk exon 125148 125859 1522 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4471"; repStart "-370"; chr18_GL383572v1_alt rmsk exon 126320 126434 366 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4304"; repStart "-1231"; chr18_GL383572v1_alt rmsk exon 126811 126892 1329 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "406"; repStart "-5203"; chr18_GL383572v1_alt rmsk exon 127179 127526 1329 - . gene_id "ERVLE_18_GL383572v1_alt"; transcript_id "ERVLE_18_GL383572v1_alt"; locus "ERVLE_18_GL383572v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3955"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "56"; repStart "-5262"; ### MER101_18_KI270863v1_alt ### chr18_KI270863v1_alt rmsk gene 107217 111748 . + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0471"; model_cov "3617"; model_pct "54.5"; chr18_KI270863v1_alt rmsk exon 107217 107303 588 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "2656"; repFamily "ERV1"; repLeft "-3983"; repStart "2568"; chr18_KI270863v1_alt rmsk exon 107442 107895 3300 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "3426"; repFamily "ERV1"; repLeft "-3213"; repStart "2951"; chr18_KI270863v1_alt rmsk exon 108194 108670 3300 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "3785"; repFamily "ERV1"; repLeft "-2854"; repStart "2959"; chr18_KI270863v1_alt rmsk exon 108970 110300 3066 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "3123"; chr18_KI270863v1_alt rmsk exon 110586 110887 1955 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "6304"; repFamily "ERV1"; repLeft "-335"; repStart "5902"; chr18_KI270863v1_alt rmsk exon 111009 111349 1881 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0471"; repClass "LTR"; repEnd "6638"; repFamily "ERV1"; repLeft "-1"; repStart "6305"; chr18_KI270863v1_alt rmsk exon 111449 111748 1205 + . gene_id "MER101_18_KI270863v1_alt"; transcript_id "MER101_18_KI270863v1_alt"; locus "MER101_18_KI270863v1_alt"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0471"; repClass "LTR"; repEnd "387"; repFamily "ERV1"; repLeft "-58"; repStart "40"; ### ERVLE_18_KI270864v1_alt ### chr18_KI270864v1_alt rmsk gene 106102 106978 . + . gene_id "ERVLE_18_KI270864v1_alt"; transcript_id "ERVLE_18_KI270864v1_alt"; locus "ERVLE_18_KI270864v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3957"; model_cov "652"; model_pct "11.5"; chr18_KI270864v1_alt rmsk exon 106102 106205 254 + . gene_id "ERVLE_18_KI270864v1_alt"; transcript_id "ERVLE_18_KI270864v1_alt"; locus "ERVLE_18_KI270864v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3957"; repClass "LTR"; repEnd "1767"; repFamily "ERVL"; repLeft "-3900"; repStart "1664"; chr18_KI270864v1_alt rmsk exon 106356 106691 392 + . gene_id "ERVLE_18_KI270864v1_alt"; transcript_id "ERVLE_18_KI270864v1_alt"; locus "ERVLE_18_KI270864v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3957"; repClass "LTR"; repEnd "2451"; repFamily "ERVL"; repLeft "-3216"; repStart "2088"; chr18_KI270864v1_alt rmsk exon 106792 106978 397 + . gene_id "ERVLE_18_KI270864v1_alt"; transcript_id "ERVLE_18_KI270864v1_alt"; locus "ERVLE_18_KI270864v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3957"; repClass "LTR"; repEnd "5069"; repFamily "ERVL"; repLeft "-598"; repStart "4883"; ### ERVLE_18_KI270911v1_alt ### chr18_KI270911v1_alt rmsk gene 122426 125689 . - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; category "oneside"; intModel "ERVL-E-int"; locid "ERVL-E-int_3958"; model_cov "1493"; model_pct "26.3"; chr18_KI270911v1_alt rmsk exon 122426 123029 500 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "MLT2F"; geneRegion "ltr"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "663"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr18_KI270911v1_alt rmsk exon 123058 123187 325 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "5632"; repFamily "ERVL"; repLeft "5504"; repStart "-35"; chr18_KI270911v1_alt rmsk exon 123311 124022 1522 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "5297"; repFamily "ERVL"; repLeft "4471"; repStart "-370"; chr18_KI270911v1_alt rmsk exon 124483 124597 366 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "4436"; repFamily "ERVL"; repLeft "4304"; repStart "-1231"; chr18_KI270911v1_alt rmsk exon 124974 125055 1329 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "464"; repFamily "ERVL"; repLeft "406"; repStart "-5203"; chr18_KI270911v1_alt rmsk exon 125342 125689 1329 - . gene_id "ERVLE_18_KI270911v1_alt"; transcript_id "ERVLE_18_KI270911v1_alt"; locus "ERVLE_18_KI270911v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3958"; repClass "LTR"; repEnd "405"; repFamily "ERVL"; repLeft "56"; repStart "-5262"; ### HML1_19_GL383573v1_alt ### chr19_GL383573v1_alt rmsk gene 48038 50198 . - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0153"; model_cov "1610"; model_pct "26.4"; chr19_GL383573v1_alt rmsk exon 48038 48299 1782 - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0153"; repClass "LTR"; repEnd "5897"; repFamily "ERVK"; repLeft "5612"; repStart "-199"; chr19_GL383573v1_alt rmsk exon 48299 48625 1678 - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0153"; repClass "LTR"; repEnd "5465"; repFamily "ERVK"; repLeft "5101"; repStart "-631"; chr19_GL383573v1_alt rmsk exon 48607 49354 5317 - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0153"; repClass "LTR"; repEnd "2448"; repFamily "ERVK"; repLeft "1704"; repStart "-3648"; chr19_GL383573v1_alt rmsk exon 49399 49617 1374 - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0153"; repClass "LTR"; repEnd "218"; repFamily "ERVK"; repLeft "1"; repStart "-5878"; chr19_GL383573v1_alt rmsk exon 49618 50198 4234 - . gene_id "HML1_19_GL383573v1_alt"; transcript_id "HML1_19_GL383573v1_alt"; locus "HML1_19_GL383573v1_alt"; repName "LTR14B"; geneRegion "ltr"; locid "HERVK14-int_0153"; repClass "LTR"; repEnd "608"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVE_19_GL383573v1_alt ### chr19_GL383573v1_alt rmsk gene 83680 92492 . - . gene_id "HERVE_19_GL383573v1_alt"; transcript_id "HERVE_19_GL383573v1_alt"; locus "HERVE_19_GL383573v1_alt"; category "prototype"; intModel "HERVE-int"; locid "HERVE-int_0185"; model_cov "7812"; model_pct "100.0"; chr19_GL383573v1_alt rmsk exon 83680 84178 3841 - . gene_id "HERVE_19_GL383573v1_alt"; transcript_id "HERVE_19_GL383573v1_alt"; locus "HERVE_19_GL383573v1_alt"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0185"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19_GL383573v1_alt rmsk exon 84179 91997 68513 - . gene_id "HERVE_19_GL383573v1_alt"; transcript_id "HERVE_19_GL383573v1_alt"; locus "HERVE_19_GL383573v1_alt"; repName "HERVE-int"; geneRegion "internal"; locid "HERVE-int_0185"; repClass "LTR"; repEnd "7813"; repFamily "ERV1"; repLeft "1"; repStart "0"; chr19_GL383573v1_alt rmsk exon 91998 92492 3688 - . gene_id "HERVE_19_GL383573v1_alt"; transcript_id "HERVE_19_GL383573v1_alt"; locus "HERVE_19_GL383573v1_alt"; repName "LTR2C"; geneRegion "ltr"; locid "HERVE-int_0185"; repClass "LTR"; repEnd "501"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### HERVL66_19_GL383573v1_alt ### chr19_GL383573v1_alt rmsk gene 107478 112291 . - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0057"; model_cov "3451"; model_pct "79.7"; chr19_GL383573v1_alt rmsk exon 107478 107671 1395 - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0057"; repClass "LTR"; repEnd "200"; repFamily "ERVL"; repLeft "7"; repStart "-410"; chr19_GL383573v1_alt rmsk exon 107678 109266 10830 - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0057"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "2654"; repStart "0"; chr19_GL383573v1_alt rmsk exon 109273 109368 12252 - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0057"; repClass "LTR"; repEnd "1770"; repFamily "ERVL"; repLeft "1679"; repStart "-2559"; chr19_GL383573v1_alt rmsk exon 109983 111676 12701 - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0057"; repClass "LTR"; repEnd "1686"; repFamily "ERVL"; repLeft "1"; repStart "-2643"; chr19_GL383573v1_alt rmsk exon 111677 112291 3483 - . gene_id "HERVL66_19_GL383573v1_alt"; transcript_id "HERVL66_19_GL383573v1_alt"; locus "HERVL66_19_GL383573v1_alt"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0057"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### HERVIP10FH_19_GL383573v1_alt ### chr19_GL383573v1_alt rmsk gene 200867 205790 . + . gene_id "HERVIP10FH_19_GL383573v1_alt"; transcript_id "HERVIP10FH_19_GL383573v1_alt"; locus "HERVIP10FH_19_GL383573v1_alt"; category "oneside"; intModel "HERVIP10FH-int"; locid "HERVIP10FH-int_0237"; model_cov "3365"; model_pct "66.0"; chr19_GL383573v1_alt rmsk exon 200867 201373 3903 + . gene_id "HERVIP10FH_19_GL383573v1_alt"; transcript_id "HERVIP10FH_19_GL383573v1_alt"; locus "HERVIP10FH_19_GL383573v1_alt"; repName "LTR10C"; geneRegion "ltr"; locid "HERVIP10FH-int_0237"; repClass "LTR"; repEnd "591"; repFamily "ERV1"; repLeft "0"; repStart "81"; chr19_GL383573v1_alt rmsk exon 201376 202232 4307 + . gene_id "HERVIP10FH_19_GL383573v1_alt"; transcript_id "HERVIP10FH_19_GL383573v1_alt"; locus "HERVIP10FH_19_GL383573v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0237"; repClass "LTR"; repEnd "847"; repFamily "ERV1"; repLeft "-4255"; repStart "2"; chr19_GL383573v1_alt rmsk exon 202753 202925 1288 + . gene_id "HERVIP10FH_19_GL383573v1_alt"; transcript_id "HERVIP10FH_19_GL383573v1_alt"; locus "HERVIP10FH_19_GL383573v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0237"; repClass "LTR"; repEnd "1585"; repFamily "ERV1"; repLeft "-3517"; repStart "1524"; chr19_GL383573v1_alt rmsk exon 203289 205790 8961 + . gene_id "HERVIP10FH_19_GL383573v1_alt"; transcript_id "HERVIP10FH_19_GL383573v1_alt"; locus "HERVIP10FH_19_GL383573v1_alt"; repName "HERVIP10FH-int"; geneRegion "internal"; locid "HERVIP10FH-int_0237"; repClass "LTR"; repEnd "4655"; repFamily "ERV1"; repLeft "-447"; repStart "2196"; ### HARLEQUIN_19_GL383573v1_alt ### chr19_GL383573v1_alt rmsk gene 345658 352651 . + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; category "oneside"; intModel "Harlequin-int"; locid "Harlequin-int_0211"; model_cov "5082"; model_pct "73.7"; chr19_GL383573v1_alt rmsk exon 345658 346116 3860 + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0211"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19_GL383573v1_alt rmsk exon 346117 348374 25770 + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0211"; repClass "LTR"; repEnd "2378"; repFamily "ERV1"; repLeft "-4518"; repStart "1"; chr19_GL383573v1_alt rmsk exon 348681 350556 25770 + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0211"; repClass "LTR"; repEnd "4238"; repFamily "ERV1"; repLeft "-2658"; repStart "2379"; chr19_GL383573v1_alt rmsk exon 350629 351017 2799 + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0211"; repClass "LTR"; repEnd "4619"; repFamily "ERV1"; repLeft "-2277"; repStart "4230"; chr19_GL383573v1_alt rmsk exon 352195 352651 3576 + . gene_id "HARLEQUIN_19_GL383573v1_alt"; transcript_id "HARLEQUIN_19_GL383573v1_alt"; locus "HARLEQUIN_19_GL383573v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0211"; repClass "LTR"; repEnd "5070"; repFamily "ERV1"; repLeft "-1826"; repStart "4613"; ### HML2_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 10454 19925 . - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0139"; model_cov "7446"; model_pct "98.8"; chr19_GL383575v2_alt rmsk exon 10454 11421 8772 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19_GL383575v2_alt rmsk exon 11511 18957 64100 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1"; repStart "-89"; chr19_GL383575v2_alt rmsk exon 18958 19925 8778 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_19_GL383575v2_alt(a) ### chr19_GL383575v2_alt rmsk gene 27750 33290 . - . gene_id "HML3_19_GL383575v2_alt(a)"; transcript_id "HML3_19_GL383575v2_alt(a)"; locus "HML3_19_GL383575v2_alt(a)"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0285"; model_cov "5223"; model_pct "86.7"; chr19_GL383575v2_alt rmsk exon 27750 28260 4203 - . gene_id "HML3_19_GL383575v2_alt(a)"; transcript_id "HML3_19_GL383575v2_alt(a)"; locus "HML3_19_GL383575v2_alt(a)"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0285"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19_GL383575v2_alt rmsk exon 28263 33290 37818 - . gene_id "HML3_19_GL383575v2_alt(a)"; transcript_id "HML3_19_GL383575v2_alt(a)"; locus "HML3_19_GL383575v2_alt(a)"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0285"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "795"; repStart "-3"; ### HML3_19_GL383575v2_alt(b) ### chr19_GL383575v2_alt rmsk gene 33350 34599 . - . gene_id "HML3_19_GL383575v2_alt(b)"; transcript_id "HML3_19_GL383575v2_alt(b)"; locus "HML3_19_GL383575v2_alt(b)"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0286"; model_cov "793"; model_pct "13.2"; chr19_GL383575v2_alt rmsk exon 33350 34112 37818 - . gene_id "HML3_19_GL383575v2_alt(b)"; transcript_id "HML3_19_GL383575v2_alt(b)"; locus "HML3_19_GL383575v2_alt(b)"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0286"; repClass "LTR"; repEnd "6018"; repFamily "ERVK"; repLeft "5225"; repStart "-3"; chr19_GL383575v2_alt rmsk exon 34113 34599 3735 - . gene_id "HML3_19_GL383575v2_alt(b)"; transcript_id "HML3_19_GL383575v2_alt(b)"; locus "HML3_19_GL383575v2_alt(b)"; repName "MER9a1"; geneRegion "ltr"; locid "HERVK9-int_0286"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HUERSP3_19_GL383575v2_alt(a) ### chr19_GL383575v2_alt rmsk gene 41103 45257 . + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; category "oneside"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0289"; model_cov "1260"; model_pct "14.1"; chr19_GL383575v2_alt rmsk exon 41103 41712 3148 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19_GL383575v2_alt rmsk exon 41750 41824 482 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "1613"; repFamily "ERV1"; repLeft "-7306"; repStart "1538"; chr19_GL383575v2_alt rmsk exon 41828 42080 1192 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "517"; repFamily "ERV1"; repLeft "-8402"; repStart "260"; chr19_GL383575v2_alt rmsk exon 42097 42295 994 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "946"; repFamily "ERV1"; repLeft "-7973"; repStart "743"; chr19_GL383575v2_alt rmsk exon 44188 44757 4668 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "2993"; repFamily "ERV1"; repLeft "-5926"; repStart "2430"; chr19_GL383575v2_alt rmsk exon 45060 45257 4668 + . gene_id "HUERSP3_19_GL383575v2_alt(a)"; transcript_id "HUERSP3_19_GL383575v2_alt(a)"; locus "HUERSP3_19_GL383575v2_alt(a)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0289"; repClass "LTR"; repEnd "3156"; repFamily "ERV1"; repLeft "-5763"; repStart "2994"; ### HUERSP3_19_GL383575v2_alt(b) ### chr19_GL383575v2_alt rmsk gene 45556 49182 . + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; category "internal"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0290"; model_cov "3041"; model_pct "34.1"; chr19_GL383575v2_alt rmsk exon 45556 46033 5639 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "2432"; repFamily "ERV1"; repLeft "-6487"; repStart "1656"; chr19_GL383575v2_alt rmsk exon 46331 46897 5639 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "2996"; repFamily "ERV1"; repLeft "-5923"; repStart "2433"; chr19_GL383575v2_alt rmsk exon 46903 47026 699 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "-5635"; repStart "3158"; chr19_GL383575v2_alt rmsk exon 47019 47158 761 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4538"; chr19_GL383575v2_alt rmsk exon 47160 47640 3884 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "5400"; repFamily "ERV1"; repLeft "-3519"; repStart "4901"; chr19_GL383575v2_alt rmsk exon 47938 48071 3884 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "5522"; repFamily "ERV1"; repLeft "-3397"; repStart "5401"; chr19_GL383575v2_alt rmsk exon 48071 48602 2926 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "6749"; repFamily "ERV1"; repLeft "-2170"; repStart "6205"; chr19_GL383575v2_alt rmsk exon 48896 49054 2926 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "6906"; repFamily "ERV1"; repLeft "-2013"; repStart "6750"; chr19_GL383575v2_alt rmsk exon 49071 49182 517 + . gene_id "HUERSP3_19_GL383575v2_alt(b)"; transcript_id "HUERSP3_19_GL383575v2_alt(b)"; locus "HUERSP3_19_GL383575v2_alt(b)"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0290"; repClass "LTR"; repEnd "6976"; repFamily "ERV1"; repLeft "-1943"; repStart "6864"; ### HERVS71_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 49390 59146 . - . gene_id "HERVS71_19_GL383575v2_alt"; transcript_id "HERVS71_19_GL383575v2_alt"; locus "HERVS71_19_GL383575v2_alt"; category "prototype"; intModel "HERVS71-int"; locid "HERVS71-int_0074"; model_cov "8954"; model_pct "99.7"; chr19_GL383575v2_alt rmsk exon 49390 49895 2245 - . gene_id "HERVS71_19_GL383575v2_alt"; transcript_id "HERVS71_19_GL383575v2_alt"; locus "HERVS71_19_GL383575v2_alt"; repName "LTR6B"; geneRegion "ltr"; locid "HERVS71-int_0074"; repClass "LTR"; repEnd "550"; repFamily "ERV1"; repLeft "61"; repStart "-8"; chr19_GL383575v2_alt rmsk exon 49904 58251 42826 - . gene_id "HERVS71_19_GL383575v2_alt"; transcript_id "HERVS71_19_GL383575v2_alt"; locus "HERVS71_19_GL383575v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0074"; repClass "LTR"; repEnd "8909"; repFamily "ERV1"; repLeft "453"; repStart "-69"; chr19_GL383575v2_alt rmsk exon 58249 58637 1150 - . gene_id "HERVS71_19_GL383575v2_alt"; transcript_id "HERVS71_19_GL383575v2_alt"; locus "HERVS71_19_GL383575v2_alt"; repName "HERVS71-int"; geneRegion "internal"; locid "HERVS71-int_0074"; repClass "LTR"; repEnd "502"; repFamily "ERV1"; repLeft "4"; repStart "-8476"; chr19_GL383575v2_alt rmsk exon 58640 59146 2306 - . gene_id "HERVS71_19_GL383575v2_alt"; transcript_id "HERVS71_19_GL383575v2_alt"; locus "HERVS71_19_GL383575v2_alt"; repName "LTR6A"; geneRegion "ltr"; locid "HERVS71-int_0074"; repClass "LTR"; repEnd "564"; repFamily "ERV1"; repLeft "3"; repStart "0"; ### MER41_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 120666 124452 . + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; category "prototype"; intModel "MER41-int"; locid "MER41-int_0671"; model_cov "1696"; model_pct "28.5"; chr19_GL383575v2_alt rmsk exon 120666 121084 2665 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0671"; repClass "LTR"; repEnd "453"; repFamily "ERV1"; repLeft "-101"; repStart "14"; chr19_GL383575v2_alt rmsk exon 121394 121434 5879 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0671"; repClass "LTR"; repEnd "4268"; repFamily "ERV1"; repLeft "-1678"; repStart "4228"; chr19_GL383575v2_alt rmsk exon 121703 121937 5879 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0671"; repClass "LTR"; repEnd "4493"; repFamily "ERV1"; repLeft "-1453"; repStart "4269"; chr19_GL383575v2_alt rmsk exon 122248 123136 5879 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0671"; repClass "LTR"; repEnd "5414"; repFamily "ERV1"; repLeft "-532"; repStart "4494"; chr19_GL383575v2_alt rmsk exon 123385 123887 5879 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0671"; repClass "LTR"; repEnd "5927"; repFamily "ERV1"; repLeft "-19"; repStart "5415"; chr19_GL383575v2_alt rmsk exon 123922 124452 3516 + . gene_id "MER41_19_GL383575v2_alt"; transcript_id "MER41_19_GL383575v2_alt"; locus "MER41_19_GL383575v2_alt"; repName "MER41A"; geneRegion "ltr"; locid "MER41-int_0671"; repClass "LTR"; repEnd "546"; repFamily "ERV1"; repLeft "-8"; repStart "1"; ### HML6_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 147340 153411 . - . gene_id "HML6_19_GL383575v2_alt"; transcript_id "HML6_19_GL383575v2_alt"; locus "HML6_19_GL383575v2_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0147"; model_cov "5409"; model_pct "75.1"; chr19_GL383575v2_alt rmsk exon 147340 147764 2973 - . gene_id "HML6_19_GL383575v2_alt"; transcript_id "HML6_19_GL383575v2_alt"; locus "HML6_19_GL383575v2_alt"; repName "LTR3A"; geneRegion "ltr"; locid "HERVK3-int_0147"; repClass "LTR"; repEnd "429"; repFamily "ERVK"; repLeft "2"; repStart "-55"; chr19_GL383575v2_alt rmsk exon 147768 148701 29302 - . gene_id "HML6_19_GL383575v2_alt"; transcript_id "HML6_19_GL383575v2_alt"; locus "HML6_19_GL383575v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0147"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6276"; repStart "-2"; chr19_GL383575v2_alt rmsk exon 149019 153411 29302 - . gene_id "HML6_19_GL383575v2_alt"; transcript_id "HML6_19_GL383575v2_alt"; locus "HML6_19_GL383575v2_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0147"; repClass "LTR"; repEnd "6275"; repFamily "ERVK"; repLeft "1790"; repStart "-927"; ### ERVLE_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 153428 155426 . - . gene_id "ERVLE_19_GL383575v2_alt"; transcript_id "ERVLE_19_GL383575v2_alt"; locus "ERVLE_19_GL383575v2_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3959"; model_cov "1630"; model_pct "28.8"; chr19_GL383575v2_alt rmsk exon 153428 154029 1148 - . gene_id "ERVLE_19_GL383575v2_alt"; transcript_id "ERVLE_19_GL383575v2_alt"; locus "ERVLE_19_GL383575v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3959"; repClass "LTR"; repEnd "4595"; repFamily "ERVL"; repLeft "3957"; repStart "-1072"; chr19_GL383575v2_alt rmsk exon 154332 155014 1148 - . gene_id "ERVLE_19_GL383575v2_alt"; transcript_id "ERVLE_19_GL383575v2_alt"; locus "ERVLE_19_GL383575v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3959"; repClass "LTR"; repEnd "3956"; repFamily "ERVL"; repLeft "3230"; repStart "-1711"; chr19_GL383575v2_alt rmsk exon 155164 155426 762 - . gene_id "ERVLE_19_GL383575v2_alt"; transcript_id "ERVLE_19_GL383575v2_alt"; locus "ERVLE_19_GL383575v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3959"; repClass "LTR"; repEnd "3060"; repFamily "ERVL"; repLeft "2794"; repStart "-2607"; ### HARLEQUIN_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 27054 32285 . + . gene_id "HARLEQUIN_19_GL383576v1_alt"; transcript_id "HARLEQUIN_19_GL383576v1_alt"; locus "HARLEQUIN_19_GL383576v1_alt"; category "prototype"; intModel "Harlequin-int"; locid "Harlequin-int_0213"; model_cov "4378"; model_pct "63.5"; chr19_GL383576v1_alt rmsk exon 27054 27512 3542 + . gene_id "HARLEQUIN_19_GL383576v1_alt"; transcript_id "HARLEQUIN_19_GL383576v1_alt"; locus "HARLEQUIN_19_GL383576v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0213"; repClass "LTR"; repEnd "463"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr19_GL383576v1_alt rmsk exon 27513 31841 25669 + . gene_id "HARLEQUIN_19_GL383576v1_alt"; transcript_id "HARLEQUIN_19_GL383576v1_alt"; locus "HARLEQUIN_19_GL383576v1_alt"; repName "Harlequin-int"; geneRegion "internal"; locid "Harlequin-int_0213"; repClass "LTR"; repEnd "4379"; repFamily "ERV1"; repLeft "-2517"; repStart "1"; chr19_GL383576v1_alt rmsk exon 31842 32285 3617 + . gene_id "HARLEQUIN_19_GL383576v1_alt"; transcript_id "HARLEQUIN_19_GL383576v1_alt"; locus "HARLEQUIN_19_GL383576v1_alt"; repName "LTR2"; geneRegion "ltr"; locid "Harlequin-int_0213"; repClass "LTR"; repEnd "462"; repFamily "ERV1"; repLeft "-1"; repStart "15"; ### MER41_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 48557 51637 . - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; category "internal"; intModel "MER41-int"; locid "MER41-int_0672"; model_cov "1491"; model_pct "25.1"; chr19_GL383576v1_alt rmsk exon 48557 48862 5012 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "5792"; repFamily "ERV1"; repLeft "5506"; repStart "-154"; chr19_GL383576v1_alt rmsk exon 49158 49655 5012 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "5505"; repFamily "ERV1"; repLeft "5023"; repStart "-441"; chr19_GL383576v1_alt rmsk exon 49956 50028 5012 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "5022"; repFamily "ERV1"; repLeft "4947"; repStart "-924"; chr19_GL383576v1_alt rmsk exon 50257 50464 3257 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "3005"; repFamily "ERV1"; repLeft "2790"; repStart "-2941"; chr19_GL383576v1_alt rmsk exon 50766 50955 3257 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "2789"; repFamily "ERV1"; repLeft "2618"; repStart "-3157"; chr19_GL383576v1_alt rmsk exon 51266 51637 3257 - . gene_id "MER41_19_GL383576v1_alt"; transcript_id "MER41_19_GL383576v1_alt"; locus "MER41_19_GL383576v1_alt"; repName "MER41-int"; geneRegion "internal"; locid "MER41-int_0672"; repClass "LTR"; repEnd "2617"; repFamily "ERV1"; repLeft "2355"; repStart "-3329"; ### HERVL_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 61614 66932 . + . gene_id "HERVL_19_GL383576v1_alt"; transcript_id "HERVL_19_GL383576v1_alt"; locus "HERVL_19_GL383576v1_alt"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1503"; model_cov "4136"; model_pct "73.2"; chr19_GL383576v1_alt rmsk exon 61614 62055 3451 + . gene_id "HERVL_19_GL383576v1_alt"; transcript_id "HERVL_19_GL383576v1_alt"; locus "HERVL_19_GL383576v1_alt"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1503"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "0"; repStart "1"; chr19_GL383576v1_alt rmsk exon 62082 62317 24366 + . gene_id "HERVL_19_GL383576v1_alt"; transcript_id "HERVL_19_GL383576v1_alt"; locus "HERVL_19_GL383576v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1503"; repClass "LTR"; repEnd "260"; repFamily "ERVL"; repLeft "-5394"; repStart "27"; chr19_GL383576v1_alt rmsk exon 62536 65499 24366 + . gene_id "HERVL_19_GL383576v1_alt"; transcript_id "HERVL_19_GL383576v1_alt"; locus "HERVL_19_GL383576v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1503"; repClass "LTR"; repEnd "3249"; repFamily "ERVL"; repLeft "-2405"; repStart "261"; chr19_GL383576v1_alt rmsk exon 66016 66932 7367 + . gene_id "HERVL_19_GL383576v1_alt"; transcript_id "HERVL_19_GL383576v1_alt"; locus "HERVL_19_GL383576v1_alt"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1503"; repClass "LTR"; repEnd "4151"; repFamily "ERVL"; repLeft "-1503"; repStart "3236"; ### HML2_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 69114 77314 . + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0140"; model_cov "7148"; model_pct "94.9"; chr19_GL383576v1_alt rmsk exon 69114 74636 50491 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr19_GL383576v1_alt rmsk exon 74636 76251 14968 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr19_GL383576v1_alt rmsk exon 76347 77314 9262 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML6_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 112326 115633 . - . gene_id "HML6_19_GL383576v1_alt"; transcript_id "HML6_19_GL383576v1_alt"; locus "HML6_19_GL383576v1_alt"; category "oneside"; intModel "HERVK3-int"; locid "HERVK3-int_0148"; model_cov "2866"; model_pct "39.8"; chr19_GL383576v1_alt rmsk exon 112326 112754 3118 - . gene_id "HML6_19_GL383576v1_alt"; transcript_id "HML6_19_GL383576v1_alt"; locus "HML6_19_GL383576v1_alt"; repName "LTR3"; geneRegion "ltr"; locid "HERVK3-int_0148"; repClass "LTR"; repEnd "432"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19_GL383576v1_alt rmsk exon 112757 113536 5510 - . gene_id "HML6_19_GL383576v1_alt"; transcript_id "HML6_19_GL383576v1_alt"; locus "HML6_19_GL383576v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0148"; repClass "LTR"; repEnd "7200"; repFamily "ERVK"; repLeft "6421"; repStart "-2"; chr19_GL383576v1_alt rmsk exon 113539 115633 11031 - . gene_id "HML6_19_GL383576v1_alt"; transcript_id "HML6_19_GL383576v1_alt"; locus "HML6_19_GL383576v1_alt"; repName "HERVK3-int"; geneRegion "internal"; locid "HERVK3-int_0148"; repClass "LTR"; repEnd "2312"; repFamily "ERVK"; repLeft "225"; repStart "-4890"; ### LTR25_19_GL383576v1_alt(a) ### chr19_GL383576v1_alt rmsk gene 145630 147213 . - . gene_id "LTR25_19_GL383576v1_alt(a)"; transcript_id "LTR25_19_GL383576v1_alt(a)"; locus "LTR25_19_GL383576v1_alt(a)"; category "oneside"; intModel "LTR25-int"; locid "LTR25-int_0252"; model_cov "1200"; model_pct "16.7"; chr19_GL383576v1_alt rmsk exon 145630 145722 571 - . gene_id "LTR25_19_GL383576v1_alt(a)"; transcript_id "LTR25_19_GL383576v1_alt(a)"; locus "LTR25_19_GL383576v1_alt(a)"; repName "LTR25"; geneRegion "ltr"; locid "LTR25-int_0252"; repClass "LTR"; repEnd "93"; repFamily "ERV1"; repLeft "1"; repStart "-751"; chr19_GL383576v1_alt rmsk exon 145723 146857 7754 - . gene_id "LTR25_19_GL383576v1_alt(a)"; transcript_id "LTR25_19_GL383576v1_alt(a)"; locus "LTR25_19_GL383576v1_alt(a)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0252"; repClass "LTR"; repEnd "7188"; repFamily "ERV1"; repLeft "6047"; repStart "0"; chr19_GL383576v1_alt rmsk exon 147150 147213 7754 - . gene_id "LTR25_19_GL383576v1_alt(a)"; transcript_id "LTR25_19_GL383576v1_alt(a)"; locus "LTR25_19_GL383576v1_alt(a)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0252"; repClass "LTR"; repEnd "6046"; repFamily "ERV1"; repLeft "5987"; repStart "-1142"; ### LTR25_19_GL383576v1_alt(b) ### chr19_GL383576v1_alt rmsk gene 153374 154364 . - . gene_id "LTR25_19_GL383576v1_alt(b)"; transcript_id "LTR25_19_GL383576v1_alt(b)"; locus "LTR25_19_GL383576v1_alt(b)"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0253"; model_cov "1003"; model_pct "14.0"; chr19_GL383576v1_alt rmsk exon 153374 154364 6190 - . gene_id "LTR25_19_GL383576v1_alt(b)"; transcript_id "LTR25_19_GL383576v1_alt(b)"; locus "LTR25_19_GL383576v1_alt(b)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0253"; repClass "LTR"; repEnd "6004"; repFamily "ERV1"; repLeft "5001"; repStart "-1184"; ### LTR25_19_GL383576v1_alt(c) ### chr19_GL383576v1_alt rmsk gene 160510 165495 . - . gene_id "LTR25_19_GL383576v1_alt(c)"; transcript_id "LTR25_19_GL383576v1_alt(c)"; locus "LTR25_19_GL383576v1_alt(c)"; category "internal"; intModel "LTR25-int"; locid "LTR25-int_0254"; model_cov "4753"; model_pct "66.1"; chr19_GL383576v1_alt rmsk exon 160510 161383 20028 - . gene_id "LTR25_19_GL383576v1_alt(c)"; transcript_id "LTR25_19_GL383576v1_alt(c)"; locus "LTR25_19_GL383576v1_alt(c)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0254"; repClass "LTR"; repEnd "5012"; repFamily "ERV1"; repLeft "4129"; repStart "-2176"; chr19_GL383576v1_alt rmsk exon 161682 163390 20028 - . gene_id "LTR25_19_GL383576v1_alt(c)"; transcript_id "LTR25_19_GL383576v1_alt(c)"; locus "LTR25_19_GL383576v1_alt(c)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0254"; repClass "LTR"; repEnd "4128"; repFamily "ERV1"; repLeft "2397"; repStart "-3060"; chr19_GL383576v1_alt rmsk exon 163438 165287 20028 - . gene_id "LTR25_19_GL383576v1_alt(c)"; transcript_id "LTR25_19_GL383576v1_alt(c)"; locus "LTR25_19_GL383576v1_alt(c)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0254"; repClass "LTR"; repEnd "2396"; repFamily "ERV1"; repLeft "439"; repStart "-4792"; chr19_GL383576v1_alt rmsk exon 165313 165495 9734 - . gene_id "LTR25_19_GL383576v1_alt(c)"; transcript_id "LTR25_19_GL383576v1_alt(c)"; locus "LTR25_19_GL383576v1_alt(c)"; repName "LTR25-int"; geneRegion "internal"; locid "LTR25-int_0254"; repClass "LTR"; repEnd "445"; repFamily "ERV1"; repLeft "263"; repStart "-6743"; ### ERVLB4_19_GL949746v1_alt(a) ### chr19_GL949746v1_alt rmsk gene 276370 279583 . + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2057"; model_cov "1251"; model_pct "21.9"; chr19_GL949746v1_alt rmsk exon 276370 276521 734 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-4401"; repStart "1162"; chr19_GL949746v1_alt rmsk exon 277011 277218 803 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2971"; repStart "2538"; chr19_GL949746v1_alt rmsk exon 277675 277921 2850 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "2974"; repFamily "ERVL"; repLeft "-2740"; repStart "2727"; chr19_GL949746v1_alt rmsk exon 278212 278291 2850 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2663"; repStart "2975"; chr19_GL949746v1_alt rmsk exon 278588 278834 2850 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-2419"; repStart "3052"; chr19_GL949746v1_alt rmsk exon 279246 279583 1526 + . gene_id "ERVLB4_19_GL949746v1_alt(a)"; transcript_id "ERVLB4_19_GL949746v1_alt(a)"; locus "ERVLB4_19_GL949746v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2057"; repClass "LTR"; repEnd "3778"; repFamily "ERVL"; repLeft "-1936"; repStart "3449"; ### ERVLB4_19_GL949746v1_alt(b) ### chr19_GL949746v1_alt rmsk gene 474652 477441 . + . gene_id "ERVLB4_19_GL949746v1_alt(b)"; transcript_id "ERVLB4_19_GL949746v1_alt(b)"; locus "ERVLB4_19_GL949746v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2058"; model_cov "2614"; model_pct "45.7"; chr19_GL949746v1_alt rmsk exon 474652 474884 509 + . gene_id "ERVLB4_19_GL949746v1_alt(b)"; transcript_id "ERVLB4_19_GL949746v1_alt(b)"; locus "ERVLB4_19_GL949746v1_alt(b)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2058"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "192"; chr19_GL949746v1_alt rmsk exon 474899 477441 11855 + . gene_id "ERVLB4_19_GL949746v1_alt(b)"; transcript_id "ERVLB4_19_GL949746v1_alt(b)"; locus "ERVLB4_19_GL949746v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2058"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "-3085"; repStart "15"; ### MER4B_19_GL949746v1_alt(a) ### chr19_GL949746v1_alt rmsk gene 522706 524205 . + . gene_id "MER4B_19_GL949746v1_alt(a)"; transcript_id "MER4B_19_GL949746v1_alt(a)"; locus "MER4B_19_GL949746v1_alt(a)"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0608"; model_cov "1361"; model_pct "20.1"; chr19_GL949746v1_alt rmsk exon 522706 522804 652 + . gene_id "MER4B_19_GL949746v1_alt(a)"; transcript_id "MER4B_19_GL949746v1_alt(a)"; locus "MER4B_19_GL949746v1_alt(a)"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0608"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "653"; chr19_GL949746v1_alt rmsk exon 522805 523936 5532 + . gene_id "MER4B_19_GL949746v1_alt(a)"; transcript_id "MER4B_19_GL949746v1_alt(a)"; locus "MER4B_19_GL949746v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0608"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-5612"; repStart "1"; chr19_GL949746v1_alt rmsk exon 523989 524205 3138 + . gene_id "MER4B_19_GL949746v1_alt(a)"; transcript_id "MER4B_19_GL949746v1_alt(a)"; locus "MER4B_19_GL949746v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0608"; repClass "LTR"; repEnd "2124"; repFamily "ERV1"; repLeft "-4634"; repStart "1908"; ### MER4B_19_GL949746v1_alt(b) ### chr19_GL949746v1_alt rmsk gene 524517 527132 . + . gene_id "MER4B_19_GL949746v1_alt(b)"; transcript_id "MER4B_19_GL949746v1_alt(b)"; locus "MER4B_19_GL949746v1_alt(b)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0609"; model_cov "2119"; model_pct "31.4"; chr19_GL949746v1_alt rmsk exon 524517 524913 7693 + . gene_id "MER4B_19_GL949746v1_alt(b)"; transcript_id "MER4B_19_GL949746v1_alt(b)"; locus "MER4B_19_GL949746v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0609"; repClass "LTR"; repEnd "2030"; repFamily "ERV1"; repLeft "-4728"; repStart "1700"; chr19_GL949746v1_alt rmsk exon 525008 526539 7693 + . gene_id "MER4B_19_GL949746v1_alt(b)"; transcript_id "MER4B_19_GL949746v1_alt(b)"; locus "MER4B_19_GL949746v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0609"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-3446"; repStart "2031"; chr19_GL949746v1_alt rmsk exon 526518 526748 1117 + . gene_id "MER4B_19_GL949746v1_alt(b)"; transcript_id "MER4B_19_GL949746v1_alt(b)"; locus "MER4B_19_GL949746v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0609"; repClass "LTR"; repEnd "3643"; repFamily "ERV1"; repLeft "-3115"; repStart "3411"; chr19_GL949746v1_alt rmsk exon 526857 527132 1892 + . gene_id "MER4B_19_GL949746v1_alt(b)"; transcript_id "MER4B_19_GL949746v1_alt(b)"; locus "MER4B_19_GL949746v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0609"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "-2841"; repStart "3641"; ### ERVLB4_19_GL949746v1_alt(c) ### chr19_GL949746v1_alt rmsk gene 560160 560963 . - . gene_id "ERVLB4_19_GL949746v1_alt(c)"; transcript_id "ERVLB4_19_GL949746v1_alt(c)"; locus "ERVLB4_19_GL949746v1_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2059"; model_cov "765"; model_pct "13.4"; chr19_GL949746v1_alt rmsk exon 560160 560811 3063 - . gene_id "ERVLB4_19_GL949746v1_alt(c)"; transcript_id "ERVLB4_19_GL949746v1_alt(c)"; locus "ERVLB4_19_GL949746v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2059"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1514"; repStart "-3548"; chr19_GL949746v1_alt rmsk exon 560850 560963 574 - . gene_id "ERVLB4_19_GL949746v1_alt(c)"; transcript_id "ERVLB4_19_GL949746v1_alt(c)"; locus "ERVLB4_19_GL949746v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2059"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1399"; repStart "-4202"; ### HUERSP3_19_GL949746v1_alt ### chr19_GL949746v1_alt rmsk gene 579046 584145 . + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0292"; model_cov "2543"; model_pct "28.5"; chr19_GL949746v1_alt rmsk exon 579046 579327 1253 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-356"; repStart "1"; chr19_GL949746v1_alt rmsk exon 579329 580156 4818 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2414"; chr19_GL949746v1_alt rmsk exon 580508 580647 709 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr19_GL949746v1_alt rmsk exon 580649 581278 3511 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "5568"; repFamily "ERV1"; repLeft "-3351"; repStart "4901"; chr19_GL949746v1_alt rmsk exon 581273 581863 2635 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "-2193"; repStart "6162"; chr19_GL949746v1_alt rmsk exon 582174 582202 2635 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "6748"; repFamily "ERV1"; repLeft "-2171"; repStart "6727"; chr19_GL949746v1_alt rmsk exon 582389 582492 318 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19_GL949746v1_alt rmsk exon 583257 583544 1217 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr19_GL949746v1_alt rmsk exon 583545 584145 2767 + . gene_id "HUERSP3_19_GL949746v1_alt"; transcript_id "HUERSP3_19_GL949746v1_alt"; locus "HUERSP3_19_GL949746v1_alt"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0292"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_19_GL949746v1_alt(d) ### chr19_GL949746v1_alt rmsk gene 591302 593303 . - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2060"; model_cov "1087"; model_pct "19.0"; chr19_GL949746v1_alt rmsk exon 591302 591587 1701 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "895"; repStart "-4534"; chr19_GL949746v1_alt rmsk exon 591590 591923 3011 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "488"; repStart "-4881"; chr19_GL949746v1_alt rmsk exon 592234 592462 3011 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "233"; repStart "-5253"; chr19_GL949746v1_alt rmsk exon 592772 592994 3011 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "3"; repStart "-5482"; chr19_GL949746v1_alt rmsk exon 593008 593041 226 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "371"; repStart "-10"; chr19_GL949746v1_alt rmsk exon 593148 593303 630 - . gene_id "ERVLB4_19_GL949746v1_alt(d)"; transcript_id "ERVLB4_19_GL949746v1_alt(d)"; locus "ERVLB4_19_GL949746v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2060"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "202"; repStart "-56"; ### HERVH_19_GL949746v1_alt(a) ### chr19_GL949746v1_alt rmsk gene 800653 803987 . - . gene_id "HERVH_19_GL949746v1_alt(a)"; transcript_id "HERVH_19_GL949746v1_alt(a)"; locus "HERVH_19_GL949746v1_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1346"; model_cov "2954"; model_pct "38.3"; chr19_GL949746v1_alt rmsk exon 800653 803572 19220 - . gene_id "HERVH_19_GL949746v1_alt(a)"; transcript_id "HERVH_19_GL949746v1_alt(a)"; locus "HERVH_19_GL949746v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1346"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949746v1_alt rmsk exon 803575 803987 2818 - . gene_id "HERVH_19_GL949746v1_alt(a)"; transcript_id "HERVH_19_GL949746v1_alt(a)"; locus "HERVH_19_GL949746v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1346"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949746v1_alt(b) ### chr19_GL949746v1_alt rmsk gene 910227 915821 . - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1347"; model_cov "4907"; model_pct "63.6"; chr19_GL949746v1_alt rmsk exon 910227 910635 2954 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949746v1_alt rmsk exon 910636 911012 2207 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949746v1_alt rmsk exon 911013 911228 1281 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949746v1_alt rmsk exon 911230 911887 3035 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949746v1_alt rmsk exon 911889 912392 3438 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949746v1_alt rmsk exon 912383 912532 966 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949746v1_alt rmsk exon 912527 915411 18739 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949746v1_alt rmsk exon 915414 915821 2898 - . gene_id "HERVH_19_GL949746v1_alt(b)"; transcript_id "HERVH_19_GL949746v1_alt(b)"; locus "HERVH_19_GL949746v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1347"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_19_GL949747v2_alt ### chr19_GL949747v2_alt rmsk gene 276251 279409 . + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2061"; model_cov "1204"; model_pct "21.1"; chr19_GL949747v2_alt rmsk exon 276251 276402 735 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-4401"; repStart "1162"; chr19_GL949747v2_alt rmsk exon 276893 277100 802 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2971"; repStart "2538"; chr19_GL949747v2_alt rmsk exon 277557 277803 2777 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "2974"; repFamily "ERVL"; repLeft "-2740"; repStart "2727"; chr19_GL949747v2_alt rmsk exon 278094 278173 2777 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2663"; repStart "2975"; chr19_GL949747v2_alt rmsk exon 278470 278716 2777 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-2419"; repStart "3052"; chr19_GL949747v2_alt rmsk exon 279128 279409 1456 + . gene_id "ERVLB4_19_GL949747v2_alt"; transcript_id "ERVLB4_19_GL949747v2_alt"; locus "ERVLB4_19_GL949747v2_alt"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2061"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "-1983"; repStart "3449"; ### HERVH_19_GL949747v2_alt(a) ### chr19_GL949747v2_alt rmsk gene 539522 545771 . - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1348"; model_cov "5413"; model_pct "70.2"; chr19_GL949747v2_alt rmsk exon 539522 539883 2230 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949747v2_alt rmsk exon 539884 540253 2403 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_GL949747v2_alt rmsk exon 540254 540469 1433 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949747v2_alt rmsk exon 540471 542259 6284 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_GL949747v2_alt rmsk exon 542250 542399 940 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949747v2_alt rmsk exon 542386 545349 20537 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_GL949747v2_alt rmsk exon 545359 545771 2792 - . gene_id "HERVH_19_GL949747v2_alt(a)"; transcript_id "HERVH_19_GL949747v2_alt(a)"; locus "HERVH_19_GL949747v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1348"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949747v2_alt(b) ### chr19_GL949747v2_alt rmsk gene 652031 657625 . - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1349"; model_cov "4907"; model_pct "63.6"; chr19_GL949747v2_alt rmsk exon 652031 652439 2954 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949747v2_alt rmsk exon 652440 652816 2207 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949747v2_alt rmsk exon 652817 653032 1281 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949747v2_alt rmsk exon 653034 653691 3035 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949747v2_alt rmsk exon 653693 654196 3438 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949747v2_alt rmsk exon 654187 654336 966 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949747v2_alt rmsk exon 654331 657215 18739 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949747v2_alt rmsk exon 657218 657625 2898 - . gene_id "HERVH_19_GL949747v2_alt(b)"; transcript_id "HERVH_19_GL949747v2_alt(b)"; locus "HERVH_19_GL949747v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1349"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949748v2_alt(a) ### chr19_GL949748v2_alt rmsk gene 877241 880575 . - . gene_id "HERVH_19_GL949748v2_alt(a)"; transcript_id "HERVH_19_GL949748v2_alt(a)"; locus "HERVH_19_GL949748v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1350"; model_cov "2954"; model_pct "38.3"; chr19_GL949748v2_alt rmsk exon 877241 880160 20242 - . gene_id "HERVH_19_GL949748v2_alt(a)"; transcript_id "HERVH_19_GL949748v2_alt(a)"; locus "HERVH_19_GL949748v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1350"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949748v2_alt rmsk exon 880163 880575 2792 - . gene_id "HERVH_19_GL949748v2_alt(a)"; transcript_id "HERVH_19_GL949748v2_alt(a)"; locus "HERVH_19_GL949748v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1350"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949748v2_alt(b) ### chr19_GL949748v2_alt rmsk gene 986815 992409 . - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1351"; model_cov "4917"; model_pct "63.7"; chr19_GL949748v2_alt rmsk exon 986815 987223 2779 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949748v2_alt rmsk exon 987224 987600 2212 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949748v2_alt rmsk exon 987601 987816 1293 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949748v2_alt rmsk exon 987818 988486 3096 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr19_GL949748v2_alt rmsk exon 988477 988980 3458 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949748v2_alt rmsk exon 988971 989120 974 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949748v2_alt rmsk exon 989115 991999 18886 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949748v2_alt rmsk exon 992002 992409 2723 - . gene_id "HERVH_19_GL949748v2_alt(b)"; transcript_id "HERVH_19_GL949748v2_alt(b)"; locus "HERVH_19_GL949748v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1351"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949749v2_alt(a) ### chr19_GL949749v2_alt rmsk gene 904778 908112 . - . gene_id "HERVH_19_GL949749v2_alt(a)"; transcript_id "HERVH_19_GL949749v2_alt(a)"; locus "HERVH_19_GL949749v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1352"; model_cov "2954"; model_pct "38.3"; chr19_GL949749v2_alt rmsk exon 904778 907697 19220 - . gene_id "HERVH_19_GL949749v2_alt(a)"; transcript_id "HERVH_19_GL949749v2_alt(a)"; locus "HERVH_19_GL949749v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1352"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949749v2_alt rmsk exon 907700 908112 2818 - . gene_id "HERVH_19_GL949749v2_alt(a)"; transcript_id "HERVH_19_GL949749v2_alt(a)"; locus "HERVH_19_GL949749v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1352"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949749v2_alt(b) ### chr19_GL949749v2_alt rmsk gene 1014352 1019946 . - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1353"; model_cov "4907"; model_pct "63.6"; chr19_GL949749v2_alt rmsk exon 1014352 1014760 2954 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949749v2_alt rmsk exon 1014761 1015137 2207 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949749v2_alt rmsk exon 1015138 1015353 1281 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949749v2_alt rmsk exon 1015355 1016012 3035 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949749v2_alt rmsk exon 1016014 1016517 3438 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949749v2_alt rmsk exon 1016508 1016657 966 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949749v2_alt rmsk exon 1016652 1019536 18739 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949749v2_alt rmsk exon 1019539 1019946 2898 - . gene_id "HERVH_19_GL949749v2_alt(b)"; transcript_id "HERVH_19_GL949749v2_alt(b)"; locus "HERVH_19_GL949749v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1353"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949750v2_alt(a) ### chr19_GL949750v2_alt rmsk gene 879327 882661 . - . gene_id "HERVH_19_GL949750v2_alt(a)"; transcript_id "HERVH_19_GL949750v2_alt(a)"; locus "HERVH_19_GL949750v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1354"; model_cov "2954"; model_pct "38.3"; chr19_GL949750v2_alt rmsk exon 879327 882246 20242 - . gene_id "HERVH_19_GL949750v2_alt(a)"; transcript_id "HERVH_19_GL949750v2_alt(a)"; locus "HERVH_19_GL949750v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1354"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949750v2_alt rmsk exon 882249 882661 2792 - . gene_id "HERVH_19_GL949750v2_alt(a)"; transcript_id "HERVH_19_GL949750v2_alt(a)"; locus "HERVH_19_GL949750v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1354"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949750v2_alt(b) ### chr19_GL949750v2_alt rmsk gene 988901 994495 . - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1355"; model_cov "4917"; model_pct "63.7"; chr19_GL949750v2_alt rmsk exon 988901 989309 2779 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949750v2_alt rmsk exon 989310 989686 2212 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949750v2_alt rmsk exon 989687 989902 1293 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949750v2_alt rmsk exon 989904 990572 3096 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr19_GL949750v2_alt rmsk exon 990563 991066 3458 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949750v2_alt rmsk exon 991057 991206 974 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949750v2_alt rmsk exon 991201 994085 18886 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949750v2_alt rmsk exon 994088 994495 2723 - . gene_id "HERVH_19_GL949750v2_alt(b)"; transcript_id "HERVH_19_GL949750v2_alt(b)"; locus "HERVH_19_GL949750v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1355"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949751v2_alt(a) ### chr19_GL949751v2_alt rmsk gene 815620 818954 . - . gene_id "HERVH_19_GL949751v2_alt(a)"; transcript_id "HERVH_19_GL949751v2_alt(a)"; locus "HERVH_19_GL949751v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1356"; model_cov "2954"; model_pct "38.3"; chr19_GL949751v2_alt rmsk exon 815620 818539 20242 - . gene_id "HERVH_19_GL949751v2_alt(a)"; transcript_id "HERVH_19_GL949751v2_alt(a)"; locus "HERVH_19_GL949751v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1356"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949751v2_alt rmsk exon 818542 818954 2792 - . gene_id "HERVH_19_GL949751v2_alt(a)"; transcript_id "HERVH_19_GL949751v2_alt(a)"; locus "HERVH_19_GL949751v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1356"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949751v2_alt(b) ### chr19_GL949751v2_alt rmsk gene 925194 930788 . - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1357"; model_cov "4907"; model_pct "63.6"; chr19_GL949751v2_alt rmsk exon 925194 925602 2954 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949751v2_alt rmsk exon 925603 925979 2207 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949751v2_alt rmsk exon 925980 926195 1281 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949751v2_alt rmsk exon 926197 926854 3035 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949751v2_alt rmsk exon 926856 927359 3438 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949751v2_alt rmsk exon 927350 927499 966 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949751v2_alt rmsk exon 927494 930378 18739 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949751v2_alt rmsk exon 930381 930788 2898 - . gene_id "HERVH_19_GL949751v2_alt(b)"; transcript_id "HERVH_19_GL949751v2_alt(b)"; locus "HERVH_19_GL949751v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1357"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_19_GL949752v1_alt(a) ### chr19_GL949752v1_alt rmsk gene 473146 475935 . + . gene_id "ERVLB4_19_GL949752v1_alt(a)"; transcript_id "ERVLB4_19_GL949752v1_alt(a)"; locus "ERVLB4_19_GL949752v1_alt(a)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2062"; model_cov "2614"; model_pct "45.7"; chr19_GL949752v1_alt rmsk exon 473146 473378 509 + . gene_id "ERVLB4_19_GL949752v1_alt(a)"; transcript_id "ERVLB4_19_GL949752v1_alt(a)"; locus "ERVLB4_19_GL949752v1_alt(a)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2062"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "192"; chr19_GL949752v1_alt rmsk exon 473393 475935 11870 + . gene_id "ERVLB4_19_GL949752v1_alt(a)"; transcript_id "ERVLB4_19_GL949752v1_alt(a)"; locus "ERVLB4_19_GL949752v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2062"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "-3085"; repStart "15"; ### MER4B_19_GL949752v1_alt(a) ### chr19_GL949752v1_alt rmsk gene 521193 522698 . + . gene_id "MER4B_19_GL949752v1_alt(a)"; transcript_id "MER4B_19_GL949752v1_alt(a)"; locus "MER4B_19_GL949752v1_alt(a)"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0610"; model_cov "1361"; model_pct "20.1"; chr19_GL949752v1_alt rmsk exon 521193 521291 652 + . gene_id "MER4B_19_GL949752v1_alt(a)"; transcript_id "MER4B_19_GL949752v1_alt(a)"; locus "MER4B_19_GL949752v1_alt(a)"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0610"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "653"; chr19_GL949752v1_alt rmsk exon 521292 522423 5532 + . gene_id "MER4B_19_GL949752v1_alt(a)"; transcript_id "MER4B_19_GL949752v1_alt(a)"; locus "MER4B_19_GL949752v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0610"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-5612"; repStart "1"; chr19_GL949752v1_alt rmsk exon 522482 522698 3115 + . gene_id "MER4B_19_GL949752v1_alt(a)"; transcript_id "MER4B_19_GL949752v1_alt(a)"; locus "MER4B_19_GL949752v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0610"; repClass "LTR"; repEnd "2124"; repFamily "ERV1"; repLeft "-4634"; repStart "1908"; ### MER4B_19_GL949752v1_alt(b) ### chr19_GL949752v1_alt rmsk gene 523010 525626 . + . gene_id "MER4B_19_GL949752v1_alt(b)"; transcript_id "MER4B_19_GL949752v1_alt(b)"; locus "MER4B_19_GL949752v1_alt(b)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0611"; model_cov "2119"; model_pct "31.4"; chr19_GL949752v1_alt rmsk exon 523010 523406 7721 + . gene_id "MER4B_19_GL949752v1_alt(b)"; transcript_id "MER4B_19_GL949752v1_alt(b)"; locus "MER4B_19_GL949752v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0611"; repClass "LTR"; repEnd "2030"; repFamily "ERV1"; repLeft "-4728"; repStart "1700"; chr19_GL949752v1_alt rmsk exon 523501 525033 7721 + . gene_id "MER4B_19_GL949752v1_alt(b)"; transcript_id "MER4B_19_GL949752v1_alt(b)"; locus "MER4B_19_GL949752v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0611"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-3446"; repStart "2031"; chr19_GL949752v1_alt rmsk exon 525012 525242 1117 + . gene_id "MER4B_19_GL949752v1_alt(b)"; transcript_id "MER4B_19_GL949752v1_alt(b)"; locus "MER4B_19_GL949752v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0611"; repClass "LTR"; repEnd "3643"; repFamily "ERV1"; repLeft "-3115"; repStart "3411"; chr19_GL949752v1_alt rmsk exon 525351 525626 1892 + . gene_id "MER4B_19_GL949752v1_alt(b)"; transcript_id "MER4B_19_GL949752v1_alt(b)"; locus "MER4B_19_GL949752v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0611"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "-2841"; repStart "3641"; ### ERVLB4_19_GL949752v1_alt(b) ### chr19_GL949752v1_alt rmsk gene 558655 559458 . - . gene_id "ERVLB4_19_GL949752v1_alt(b)"; transcript_id "ERVLB4_19_GL949752v1_alt(b)"; locus "ERVLB4_19_GL949752v1_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2063"; model_cov "765"; model_pct "13.4"; chr19_GL949752v1_alt rmsk exon 558655 559306 3063 - . gene_id "ERVLB4_19_GL949752v1_alt(b)"; transcript_id "ERVLB4_19_GL949752v1_alt(b)"; locus "ERVLB4_19_GL949752v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2063"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1514"; repStart "-3548"; chr19_GL949752v1_alt rmsk exon 559345 559458 574 - . gene_id "ERVLB4_19_GL949752v1_alt(b)"; transcript_id "ERVLB4_19_GL949752v1_alt(b)"; locus "ERVLB4_19_GL949752v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2063"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1399"; repStart "-4202"; ### HUERSP3_19_GL949752v1_alt ### chr19_GL949752v1_alt rmsk gene 577525 582585 . + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0293"; model_cov "2707"; model_pct "30.4"; chr19_GL949752v1_alt rmsk exon 577525 577806 1253 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-356"; repStart "1"; chr19_GL949752v1_alt rmsk exon 577808 578636 4812 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2414"; chr19_GL949752v1_alt rmsk exon 578988 579127 709 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr19_GL949752v1_alt rmsk exon 579129 579758 3511 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "5568"; repFamily "ERV1"; repLeft "-3351"; repStart "4901"; chr19_GL949752v1_alt rmsk exon 579753 580314 3317 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "-2193"; repStart "6162"; chr19_GL949752v1_alt rmsk exon 580614 580818 3317 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "-2007"; repStart "6727"; chr19_GL949752v1_alt rmsk exon 580830 580933 318 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19_GL949752v1_alt rmsk exon 581710 581984 1217 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr19_GL949752v1_alt rmsk exon 581985 582585 2795 + . gene_id "HUERSP3_19_GL949752v1_alt"; transcript_id "HUERSP3_19_GL949752v1_alt"; locus "HUERSP3_19_GL949752v1_alt"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0293"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_19_GL949752v1_alt(c) ### chr19_GL949752v1_alt rmsk gene 589757 591757 . - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2064"; model_cov "1087"; model_pct "19.0"; chr19_GL949752v1_alt rmsk exon 589757 590042 1701 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "895"; repStart "-4534"; chr19_GL949752v1_alt rmsk exon 590045 590378 3011 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "488"; repStart "-4881"; chr19_GL949752v1_alt rmsk exon 590689 590917 3011 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "233"; repStart "-5253"; chr19_GL949752v1_alt rmsk exon 591226 591448 3011 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "3"; repStart "-5482"; chr19_GL949752v1_alt rmsk exon 591462 591495 226 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "371"; repStart "-10"; chr19_GL949752v1_alt rmsk exon 591602 591757 630 - . gene_id "ERVLB4_19_GL949752v1_alt(c)"; transcript_id "ERVLB4_19_GL949752v1_alt(c)"; locus "ERVLB4_19_GL949752v1_alt(c)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2064"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "202"; repStart "-56"; ### HERVH_19_GL949752v1_alt(a) ### chr19_GL949752v1_alt rmsk gene 798661 804957 . - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1358"; model_cov "5413"; model_pct "70.2"; chr19_GL949752v1_alt rmsk exon 798661 799073 2858 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949752v1_alt rmsk exon 799074 799443 2247 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_GL949752v1_alt rmsk exon 799444 799659 1380 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949752v1_alt rmsk exon 799661 801449 5899 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_GL949752v1_alt rmsk exon 801440 801589 943 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949752v1_alt rmsk exon 801576 804535 19361 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_GL949752v1_alt rmsk exon 804545 804957 2818 - . gene_id "HERVH_19_GL949752v1_alt(a)"; transcript_id "HERVH_19_GL949752v1_alt(a)"; locus "HERVH_19_GL949752v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1358"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949752v1_alt(b) ### chr19_GL949752v1_alt rmsk gene 909611 915205 . - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1359"; model_cov "4907"; model_pct "63.6"; chr19_GL949752v1_alt rmsk exon 909611 910019 2954 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949752v1_alt rmsk exon 910020 910396 2207 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949752v1_alt rmsk exon 910397 910612 1281 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949752v1_alt rmsk exon 910614 911271 3035 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949752v1_alt rmsk exon 911273 911776 3438 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949752v1_alt rmsk exon 911767 911916 966 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949752v1_alt rmsk exon 911911 914795 18739 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949752v1_alt rmsk exon 914798 915205 2898 - . gene_id "HERVH_19_GL949752v1_alt(b)"; transcript_id "HERVH_19_GL949752v1_alt(b)"; locus "HERVH_19_GL949752v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1359"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_19_GL949753v2_alt(a) ### chr19_GL949753v2_alt rmsk gene 276626 279783 . + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2065"; model_cov "1204"; model_pct "21.1"; chr19_GL949753v2_alt rmsk exon 276626 276777 734 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-4401"; repStart "1162"; chr19_GL949753v2_alt rmsk exon 277267 277474 803 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2971"; repStart "2538"; chr19_GL949753v2_alt rmsk exon 277931 278177 2777 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "2974"; repFamily "ERVL"; repLeft "-2740"; repStart "2727"; chr19_GL949753v2_alt rmsk exon 278468 278547 2777 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2663"; repStart "2975"; chr19_GL949753v2_alt rmsk exon 278844 279090 2777 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-2419"; repStart "3052"; chr19_GL949753v2_alt rmsk exon 279502 279783 1456 + . gene_id "ERVLB4_19_GL949753v2_alt(a)"; transcript_id "ERVLB4_19_GL949753v2_alt(a)"; locus "ERVLB4_19_GL949753v2_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2065"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "-1983"; repStart "3449"; ### ERVLB4_19_GL949753v2_alt(b) ### chr19_GL949753v2_alt rmsk gene 380260 381063 . - . gene_id "ERVLB4_19_GL949753v2_alt(b)"; transcript_id "ERVLB4_19_GL949753v2_alt(b)"; locus "ERVLB4_19_GL949753v2_alt(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2066"; model_cov "765"; model_pct "13.4"; chr19_GL949753v2_alt rmsk exon 380260 380911 3063 - . gene_id "ERVLB4_19_GL949753v2_alt(b)"; transcript_id "ERVLB4_19_GL949753v2_alt(b)"; locus "ERVLB4_19_GL949753v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2066"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1514"; repStart "-3548"; chr19_GL949753v2_alt rmsk exon 380950 381063 574 - . gene_id "ERVLB4_19_GL949753v2_alt(b)"; transcript_id "ERVLB4_19_GL949753v2_alt(b)"; locus "ERVLB4_19_GL949753v2_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2066"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1399"; repStart "-4202"; ### HUERSP3_19_GL949753v2_alt ### chr19_GL949753v2_alt rmsk gene 399147 404247 . + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0294"; model_cov "2543"; model_pct "28.5"; chr19_GL949753v2_alt rmsk exon 399147 399428 1253 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-356"; repStart "1"; chr19_GL949753v2_alt rmsk exon 399430 400257 4818 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2414"; chr19_GL949753v2_alt rmsk exon 400609 400748 709 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr19_GL949753v2_alt rmsk exon 400750 401379 3511 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "5568"; repFamily "ERV1"; repLeft "-3351"; repStart "4901"; chr19_GL949753v2_alt rmsk exon 401374 401959 2665 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "-2193"; repStart "6162"; chr19_GL949753v2_alt rmsk exon 402275 402303 2665 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "6748"; repFamily "ERV1"; repLeft "-2171"; repStart "6727"; chr19_GL949753v2_alt rmsk exon 402490 402593 318 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19_GL949753v2_alt rmsk exon 403372 403646 1217 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr19_GL949753v2_alt rmsk exon 403647 404247 2795 + . gene_id "HUERSP3_19_GL949753v2_alt"; transcript_id "HUERSP3_19_GL949753v2_alt"; locus "HUERSP3_19_GL949753v2_alt"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0294"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_19_GL949753v2_alt(c) ### chr19_GL949753v2_alt rmsk gene 411497 413498 . - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2067"; model_cov "1087"; model_pct "19.0"; chr19_GL949753v2_alt rmsk exon 411497 411782 1701 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "895"; repStart "-4534"; chr19_GL949753v2_alt rmsk exon 411785 412118 3011 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "488"; repStart "-4881"; chr19_GL949753v2_alt rmsk exon 412429 412657 3011 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "233"; repStart "-5253"; chr19_GL949753v2_alt rmsk exon 412967 413189 3011 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "3"; repStart "-5482"; chr19_GL949753v2_alt rmsk exon 413203 413236 226 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "371"; repStart "-10"; chr19_GL949753v2_alt rmsk exon 413343 413498 630 - . gene_id "ERVLB4_19_GL949753v2_alt(c)"; transcript_id "ERVLB4_19_GL949753v2_alt(c)"; locus "ERVLB4_19_GL949753v2_alt(c)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2067"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "202"; repStart "-56"; ### HERVH_19_GL949753v2_alt(a) ### chr19_GL949753v2_alt rmsk gene 609416 612750 . - . gene_id "HERVH_19_GL949753v2_alt(a)"; transcript_id "HERVH_19_GL949753v2_alt(a)"; locus "HERVH_19_GL949753v2_alt(a)"; category "oneside"; intModel "HERVH-int"; locid "HERVH-int_1360"; model_cov "2954"; model_pct "38.3"; chr19_GL949753v2_alt rmsk exon 609416 612335 19220 - . gene_id "HERVH_19_GL949753v2_alt(a)"; transcript_id "HERVH_19_GL949753v2_alt(a)"; locus "HERVH_19_GL949753v2_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1360"; repClass "LTR"; repEnd "2955"; repFamily "ERV1"; repLeft "1"; repStart "-4758"; chr19_GL949753v2_alt rmsk exon 612338 612750 2818 - . gene_id "HERVH_19_GL949753v2_alt(a)"; transcript_id "HERVH_19_GL949753v2_alt(a)"; locus "HERVH_19_GL949753v2_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1360"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_GL949753v2_alt(b) ### chr19_GL949753v2_alt rmsk gene 718990 724584 . - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1361"; model_cov "4907"; model_pct "63.6"; chr19_GL949753v2_alt rmsk exon 718990 719398 2954 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_GL949753v2_alt rmsk exon 719399 719775 2207 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_GL949753v2_alt rmsk exon 719776 719991 1281 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_GL949753v2_alt rmsk exon 719993 720650 3035 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4488"; repStart "-2564"; chr19_GL949753v2_alt rmsk exon 720652 721155 3438 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_GL949753v2_alt rmsk exon 721146 721295 966 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_GL949753v2_alt rmsk exon 721290 724174 18739 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_GL949753v2_alt rmsk exon 724177 724584 2898 - . gene_id "HERVH_19_GL949753v2_alt(b)"; transcript_id "HERVH_19_GL949753v2_alt(b)"; locus "HERVH_19_GL949753v2_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1361"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP1_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 29523 31467 . + . gene_id "HUERSP1_19_KI270867v1_alt"; transcript_id "HUERSP1_19_KI270867v1_alt"; locus "HUERSP1_19_KI270867v1_alt"; category "internal"; intModel "HUERS-P1-int"; locid "HUERS-P1-int_0248"; model_cov "1182"; model_pct "18.9"; chr19_KI270867v1_alt rmsk exon 29523 30082 1995 + . gene_id "HUERSP1_19_KI270867v1_alt"; transcript_id "HUERSP1_19_KI270867v1_alt"; locus "HUERSP1_19_KI270867v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0248"; repClass "LTR"; repEnd "1198"; repFamily "ERV1"; repLeft "-5065"; repStart "629"; chr19_KI270867v1_alt rmsk exon 30101 30388 1377 + . gene_id "HUERSP1_19_KI270867v1_alt"; transcript_id "HUERSP1_19_KI270867v1_alt"; locus "HUERSP1_19_KI270867v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0248"; repClass "LTR"; repEnd "1536"; repFamily "ERV1"; repLeft "-4727"; repStart "1235"; chr19_KI270867v1_alt rmsk exon 31164 31467 762 + . gene_id "HUERSP1_19_KI270867v1_alt"; transcript_id "HUERSP1_19_KI270867v1_alt"; locus "HUERSP1_19_KI270867v1_alt"; repName "HUERS-P1-int"; geneRegion "internal"; locid "HUERS-P1-int_0248"; repClass "LTR"; repEnd "6258"; repFamily "ERV1"; repLeft "-5"; repStart "5946"; ### HERVL74_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 70243 70971 . + . gene_id "HERVL74_19_KI270867v1_alt"; transcript_id "HERVL74_19_KI270867v1_alt"; locus "HERVL74_19_KI270867v1_alt"; category "internal"; intModel "HERVL74-int"; locid "HERVL74-int_0153"; model_cov "742"; model_pct "13.1"; chr19_KI270867v1_alt rmsk exon 70243 70897 3174 + . gene_id "HERVL74_19_KI270867v1_alt"; transcript_id "HERVL74_19_KI270867v1_alt"; locus "HERVL74_19_KI270867v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0153"; repClass "LTR"; repEnd "1708"; repFamily "ERVL"; repLeft "-3977"; repStart "1030"; chr19_KI270867v1_alt rmsk exon 70909 70971 276 + . gene_id "HERVL74_19_KI270867v1_alt"; transcript_id "HERVL74_19_KI270867v1_alt"; locus "HERVL74_19_KI270867v1_alt"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0153"; repClass "LTR"; repEnd "3048"; repFamily "ERVL"; repLeft "-2637"; repStart "2984"; ### PABLA_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 127028 130082 . + . gene_id "PABLA_19_KI270867v1_alt"; transcript_id "PABLA_19_KI270867v1_alt"; locus "PABLA_19_KI270867v1_alt"; category "oneside"; intModel "PABL_A-int"; locid "PABL_A-int_0187"; model_cov "2088"; model_pct "41.6"; chr19_KI270867v1_alt rmsk exon 127028 128597 15101 + . gene_id "PABLA_19_KI270867v1_alt"; transcript_id "PABLA_19_KI270867v1_alt"; locus "PABLA_19_KI270867v1_alt"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0187"; repClass "LTR"; repEnd "4488"; repFamily "ERV1"; repLeft "-527"; repStart "2926"; chr19_KI270867v1_alt rmsk exon 128879 129418 15101 + . gene_id "PABLA_19_KI270867v1_alt"; transcript_id "PABLA_19_KI270867v1_alt"; locus "PABLA_19_KI270867v1_alt"; repName "PABL_A-int"; geneRegion "internal"; locid "PABL_A-int_0187"; repClass "LTR"; repEnd "5015"; repFamily "ERV1"; repLeft "0"; repStart "4489"; chr19_KI270867v1_alt rmsk exon 129419 130082 4696 + . gene_id "PABLA_19_KI270867v1_alt"; transcript_id "PABLA_19_KI270867v1_alt"; locus "PABLA_19_KI270867v1_alt"; repName "PABL_A"; geneRegion "ltr"; locid "PABL_A-int_0187"; repClass "LTR"; repEnd "660"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP2_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 141475 145634 . - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; category "prototype"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0141"; model_cov "2565"; model_pct "83.1"; chr19_KI270867v1_alt rmsk exon 141475 142166 4403 - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0141"; repClass "LTR"; repEnd "706"; repFamily "ERV1"; repLeft "8"; repStart "-131"; chr19_KI270867v1_alt rmsk exon 142179 142312 970 - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0141"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "2956"; repStart "0"; chr19_KI270867v1_alt rmsk exon 142303 144646 14632 - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0141"; repClass "LTR"; repEnd "2544"; repFamily "ERV1"; repLeft "230"; repStart "-544"; chr19_KI270867v1_alt rmsk exon 144641 144765 457 - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0141"; repClass "LTR"; repEnd "120"; repFamily "ERV1"; repLeft "1"; repStart "-2968"; chr19_KI270867v1_alt rmsk exon 144766 145634 3553 - . gene_id "HUERSP2_19_KI270867v1_alt"; transcript_id "HUERSP2_19_KI270867v1_alt"; locus "HUERSP2_19_KI270867v1_alt"; repName "LTR1A2"; geneRegion "ltr"; locid "HUERS-P2-int_0141"; repClass "LTR"; repEnd "837"; repFamily "ERV1"; repLeft "1"; repStart "0"; ### ERV316A3_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 194317 196123 . + . gene_id "ERV316A3_19_KI270867v1_alt"; transcript_id "ERV316A3_19_KI270867v1_alt"; locus "ERV316A3_19_KI270867v1_alt"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3046"; model_cov "1193"; model_pct "22.8"; chr19_KI270867v1_alt rmsk exon 194317 194890 570 + . gene_id "ERV316A3_19_KI270867v1_alt"; transcript_id "ERV316A3_19_KI270867v1_alt"; locus "ERV316A3_19_KI270867v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3046"; repClass "LTR"; repEnd "1856"; repFamily "ERVL"; repLeft "-3370"; repStart "1177"; chr19_KI270867v1_alt rmsk exon 194923 195342 387 + . gene_id "ERV316A3_19_KI270867v1_alt"; transcript_id "ERV316A3_19_KI270867v1_alt"; locus "ERV316A3_19_KI270867v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3046"; repClass "LTR"; repEnd "2556"; repFamily "ERVL"; repLeft "-2670"; repStart "2144"; chr19_KI270867v1_alt rmsk exon 196020 196123 262 + . gene_id "ERV316A3_19_KI270867v1_alt"; transcript_id "ERV316A3_19_KI270867v1_alt"; locus "ERV316A3_19_KI270867v1_alt"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3046"; repClass "LTR"; repEnd "4590"; repFamily "ERVL"; repLeft "-636"; repStart "4488"; ### MER4B_19_KI270867v1_alt ### chr19_KI270867v1_alt rmsk gene 232483 233762 . + . gene_id "MER4B_19_KI270867v1_alt"; transcript_id "MER4B_19_KI270867v1_alt"; locus "MER4B_19_KI270867v1_alt"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0613"; model_cov "710"; model_pct "10.5"; chr19_KI270867v1_alt rmsk exon 232483 232950 2036 + . gene_id "MER4B_19_KI270867v1_alt"; transcript_id "MER4B_19_KI270867v1_alt"; locus "MER4B_19_KI270867v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0613"; repClass "LTR"; repEnd "3540"; repFamily "ERV1"; repLeft "-3218"; repStart "3059"; chr19_KI270867v1_alt rmsk exon 233530 233762 1132 + . gene_id "MER4B_19_KI270867v1_alt"; transcript_id "MER4B_19_KI270867v1_alt"; locus "MER4B_19_KI270867v1_alt"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0613"; repClass "LTR"; repEnd "5329"; repFamily "ERV1"; repLeft "-1429"; repStart "5100"; ### HERVH_19_KI270917v1_alt ### chr19_KI270917v1_alt rmsk gene 173244 179544 . - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1362"; model_cov "5413"; model_pct "70.2"; chr19_KI270917v1_alt rmsk exon 173244 173656 2829 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270917v1_alt rmsk exon 173657 174026 2440 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270917v1_alt rmsk exon 174027 174242 1385 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270917v1_alt rmsk exon 174244 176032 6346 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270917v1_alt rmsk exon 176023 176172 940 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270917v1_alt rmsk exon 176159 179122 20548 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270917v1_alt rmsk exon 179132 179544 2792 - . gene_id "HERVH_19_KI270917v1_alt"; transcript_id "HERVH_19_KI270917v1_alt"; locus "HERVH_19_KI270917v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1362"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270920v1_alt ### chr19_KI270920v1_alt rmsk gene 180317 186617 . - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1363"; model_cov "5413"; model_pct "70.2"; chr19_KI270920v1_alt rmsk exon 180317 180729 2829 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270920v1_alt rmsk exon 180730 181099 2440 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270920v1_alt rmsk exon 181100 181315 1385 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270920v1_alt rmsk exon 181317 183105 6346 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270920v1_alt rmsk exon 183096 183245 940 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270920v1_alt rmsk exon 183232 186195 20548 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270920v1_alt rmsk exon 186205 186617 2792 - . gene_id "HERVH_19_KI270920v1_alt"; transcript_id "HERVH_19_KI270920v1_alt"; locus "HERVH_19_KI270920v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1363"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270921v1_alt ### chr19_KI270921v1_alt rmsk gene 264536 270836 . - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1364"; model_cov "5413"; model_pct "70.2"; chr19_KI270921v1_alt rmsk exon 264536 264948 2829 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270921v1_alt rmsk exon 264949 265318 2440 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270921v1_alt rmsk exon 265319 265534 1385 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270921v1_alt rmsk exon 265536 267324 6346 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270921v1_alt rmsk exon 267315 267464 940 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270921v1_alt rmsk exon 267451 270414 20548 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270921v1_alt rmsk exon 270424 270836 2792 - . gene_id "HERVH_19_KI270921v1_alt"; transcript_id "HERVH_19_KI270921v1_alt"; locus "HERVH_19_KI270921v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1364"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270922v1_alt ### chr19_KI270922v1_alt rmsk gene 170247 176547 . - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1365"; model_cov "5413"; model_pct "70.2"; chr19_KI270922v1_alt rmsk exon 170247 170659 2829 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270922v1_alt rmsk exon 170660 171029 2440 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270922v1_alt rmsk exon 171030 171245 1385 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270922v1_alt rmsk exon 171247 173035 6346 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270922v1_alt rmsk exon 173026 173175 940 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270922v1_alt rmsk exon 173162 176125 20548 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270922v1_alt rmsk exon 176135 176547 2792 - . gene_id "HERVH_19_KI270922v1_alt"; transcript_id "HERVH_19_KI270922v1_alt"; locus "HERVH_19_KI270922v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1365"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270923v1_alt ### chr19_KI270923v1_alt rmsk gene 171664 177964 . - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1366"; model_cov "5413"; model_pct "70.2"; chr19_KI270923v1_alt rmsk exon 171664 172076 2829 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270923v1_alt rmsk exon 172077 172446 2440 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270923v1_alt rmsk exon 172447 172662 1385 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270923v1_alt rmsk exon 172664 174452 6346 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270923v1_alt rmsk exon 174443 174592 940 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270923v1_alt rmsk exon 174579 177542 20548 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270923v1_alt rmsk exon 177552 177964 2792 - . gene_id "HERVH_19_KI270923v1_alt"; transcript_id "HERVH_19_KI270923v1_alt"; locus "HERVH_19_KI270923v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1366"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270929v1_alt ### chr19_KI270929v1_alt rmsk gene 168515 174815 . - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1367"; model_cov "5413"; model_pct "70.2"; chr19_KI270929v1_alt rmsk exon 168515 168927 2829 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270929v1_alt rmsk exon 168928 169297 2440 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270929v1_alt rmsk exon 169298 169513 1385 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270929v1_alt rmsk exon 169515 171303 6346 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270929v1_alt rmsk exon 171294 171443 940 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270929v1_alt rmsk exon 171430 174393 20548 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270929v1_alt rmsk exon 174403 174815 2792 - . gene_id "HERVH_19_KI270929v1_alt"; transcript_id "HERVH_19_KI270929v1_alt"; locus "HERVH_19_KI270929v1_alt"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1367"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### ERVLB4_19_KI270938v1_alt(a) ### chr19_KI270938v1_alt rmsk gene 276599 279756 . + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2068"; model_cov "1204"; model_pct "21.1"; chr19_KI270938v1_alt rmsk exon 276599 276750 734 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "1313"; repFamily "ERVL"; repLeft "-4401"; repStart "1162"; chr19_KI270938v1_alt rmsk exon 277240 277447 803 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "2743"; repFamily "ERVL"; repLeft "-2971"; repStart "2538"; chr19_KI270938v1_alt rmsk exon 277904 278150 2777 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "2974"; repFamily "ERVL"; repLeft "-2740"; repStart "2727"; chr19_KI270938v1_alt rmsk exon 278441 278520 2777 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "3051"; repFamily "ERVL"; repLeft "-2663"; repStart "2975"; chr19_KI270938v1_alt rmsk exon 278817 279063 2777 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "3295"; repFamily "ERVL"; repLeft "-2419"; repStart "3052"; chr19_KI270938v1_alt rmsk exon 279475 279756 1456 + . gene_id "ERVLB4_19_KI270938v1_alt(a)"; transcript_id "ERVLB4_19_KI270938v1_alt(a)"; locus "ERVLB4_19_KI270938v1_alt(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2068"; repClass "LTR"; repEnd "3731"; repFamily "ERVL"; repLeft "-1983"; repStart "3449"; ### ERVLB4_19_KI270938v1_alt(b) ### chr19_KI270938v1_alt rmsk gene 550843 553632 . + . gene_id "ERVLB4_19_KI270938v1_alt(b)"; transcript_id "ERVLB4_19_KI270938v1_alt(b)"; locus "ERVLB4_19_KI270938v1_alt(b)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2069"; model_cov "2614"; model_pct "45.7"; chr19_KI270938v1_alt rmsk exon 550843 551075 509 + . gene_id "ERVLB4_19_KI270938v1_alt(b)"; transcript_id "ERVLB4_19_KI270938v1_alt(b)"; locus "ERVLB4_19_KI270938v1_alt(b)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2069"; repClass "LTR"; repEnd "414"; repFamily "ERVL"; repLeft "0"; repStart "192"; chr19_KI270938v1_alt rmsk exon 551090 553632 11870 + . gene_id "ERVLB4_19_KI270938v1_alt(b)"; transcript_id "ERVLB4_19_KI270938v1_alt(b)"; locus "ERVLB4_19_KI270938v1_alt(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2069"; repClass "LTR"; repEnd "2629"; repFamily "ERVL"; repLeft "-3085"; repStart "15"; ### MER4B_19_KI270938v1_alt(a) ### chr19_KI270938v1_alt rmsk gene 598888 600393 . + . gene_id "MER4B_19_KI270938v1_alt(a)"; transcript_id "MER4B_19_KI270938v1_alt(a)"; locus "MER4B_19_KI270938v1_alt(a)"; category "oneside"; intModel "MER4B-int"; locid "MER4B-int_0614"; model_cov "1361"; model_pct "20.1"; chr19_KI270938v1_alt rmsk exon 598888 598986 652 + . gene_id "MER4B_19_KI270938v1_alt(a)"; transcript_id "MER4B_19_KI270938v1_alt(a)"; locus "MER4B_19_KI270938v1_alt(a)"; repName "MER4E"; geneRegion "ltr"; locid "MER4B-int_0614"; repClass "LTR"; repEnd "766"; repFamily "ERV1"; repLeft "0"; repStart "653"; chr19_KI270938v1_alt rmsk exon 598987 600118 5532 + . gene_id "MER4B_19_KI270938v1_alt(a)"; transcript_id "MER4B_19_KI270938v1_alt(a)"; locus "MER4B_19_KI270938v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0614"; repClass "LTR"; repEnd "1146"; repFamily "ERV1"; repLeft "-5612"; repStart "1"; chr19_KI270938v1_alt rmsk exon 600177 600393 3163 + . gene_id "MER4B_19_KI270938v1_alt(a)"; transcript_id "MER4B_19_KI270938v1_alt(a)"; locus "MER4B_19_KI270938v1_alt(a)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0614"; repClass "LTR"; repEnd "2124"; repFamily "ERV1"; repLeft "-4634"; repStart "1908"; ### MER4B_19_KI270938v1_alt(b) ### chr19_KI270938v1_alt rmsk gene 600705 603313 . + . gene_id "MER4B_19_KI270938v1_alt(b)"; transcript_id "MER4B_19_KI270938v1_alt(b)"; locus "MER4B_19_KI270938v1_alt(b)"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0615"; model_cov "2119"; model_pct "31.4"; chr19_KI270938v1_alt rmsk exon 600705 601093 7721 + . gene_id "MER4B_19_KI270938v1_alt(b)"; transcript_id "MER4B_19_KI270938v1_alt(b)"; locus "MER4B_19_KI270938v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0615"; repClass "LTR"; repEnd "2025"; repFamily "ERV1"; repLeft "-4733"; repStart "1700"; chr19_KI270938v1_alt rmsk exon 601188 602720 7721 + . gene_id "MER4B_19_KI270938v1_alt(b)"; transcript_id "MER4B_19_KI270938v1_alt(b)"; locus "MER4B_19_KI270938v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0615"; repClass "LTR"; repEnd "3312"; repFamily "ERV1"; repLeft "-3446"; repStart "2026"; chr19_KI270938v1_alt rmsk exon 602699 602929 1117 + . gene_id "MER4B_19_KI270938v1_alt(b)"; transcript_id "MER4B_19_KI270938v1_alt(b)"; locus "MER4B_19_KI270938v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0615"; repClass "LTR"; repEnd "3643"; repFamily "ERV1"; repLeft "-3115"; repStart "3411"; chr19_KI270938v1_alt rmsk exon 603038 603313 1892 + . gene_id "MER4B_19_KI270938v1_alt(b)"; transcript_id "MER4B_19_KI270938v1_alt(b)"; locus "MER4B_19_KI270938v1_alt(b)"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0615"; repClass "LTR"; repEnd "3917"; repFamily "ERV1"; repLeft "-2841"; repStart "3641"; ### ERVLB4_19_KI270938v1_alt(c) ### chr19_KI270938v1_alt rmsk gene 636339 637142 . - . gene_id "ERVLB4_19_KI270938v1_alt(c)"; transcript_id "ERVLB4_19_KI270938v1_alt(c)"; locus "ERVLB4_19_KI270938v1_alt(c)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2070"; model_cov "765"; model_pct "13.4"; chr19_KI270938v1_alt rmsk exon 636339 636990 2869 - . gene_id "ERVLB4_19_KI270938v1_alt(c)"; transcript_id "ERVLB4_19_KI270938v1_alt(c)"; locus "ERVLB4_19_KI270938v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2070"; repClass "LTR"; repEnd "2166"; repFamily "ERVL"; repLeft "1514"; repStart "-3548"; chr19_KI270938v1_alt rmsk exon 637029 637142 541 - . gene_id "ERVLB4_19_KI270938v1_alt(c)"; transcript_id "ERVLB4_19_KI270938v1_alt(c)"; locus "ERVLB4_19_KI270938v1_alt(c)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2070"; repClass "LTR"; repEnd "1512"; repFamily "ERVL"; repLeft "1399"; repStart "-4202"; ### HUERSP3_19_KI270938v1_alt ### chr19_KI270938v1_alt rmsk gene 655208 660305 . + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0295"; model_cov "2641"; model_pct "29.6"; chr19_KI270938v1_alt rmsk exon 655208 655489 1173 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "310"; repFamily "ERV1"; repLeft "-356"; repStart "1"; chr19_KI270938v1_alt rmsk exon 655491 656318 4519 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "3252"; repFamily "ERV1"; repLeft "-5667"; repStart "2414"; chr19_KI270938v1_alt rmsk exon 656670 656809 669 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "4682"; repFamily "ERV1"; repLeft "-4237"; repStart "4549"; chr19_KI270938v1_alt rmsk exon 656847 657440 3339 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "5568"; repFamily "ERV1"; repLeft "-3351"; repStart "4966"; chr19_KI270938v1_alt rmsk exon 657435 658017 2994 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "6726"; repFamily "ERV1"; repLeft "-2193"; repStart "6162"; chr19_KI270938v1_alt rmsk exon 658334 658537 2994 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "6911"; repFamily "ERV1"; repLeft "-2008"; repStart "6727"; chr19_KI270938v1_alt rmsk exon 658549 658652 298 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "8449"; repFamily "ERV1"; repLeft "-470"; repStart "8347"; chr19_KI270938v1_alt rmsk exon 659430 659704 1141 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "0"; repStart "8701"; chr19_KI270938v1_alt rmsk exon 659705 660305 2597 + . gene_id "HUERSP3_19_KI270938v1_alt"; transcript_id "HUERSP3_19_KI270938v1_alt"; locus "HUERSP3_19_KI270938v1_alt"; repName "LTR9B"; geneRegion "ltr"; locid "HUERS-P3-int_0295"; repClass "LTR"; repEnd "644"; repFamily "ERV1"; repLeft "0"; repStart "7"; ### ERVLB4_19_KI270938v1_alt(d) ### chr19_KI270938v1_alt rmsk gene 667552 669554 . - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2071"; model_cov "1087"; model_pct "19.0"; chr19_KI270938v1_alt rmsk exon 667552 667837 1701 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "1180"; repFamily "ERVL"; repLeft "895"; repStart "-4534"; chr19_KI270938v1_alt rmsk exon 667840 668173 3011 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "833"; repFamily "ERVL"; repLeft "488"; repStart "-4881"; chr19_KI270938v1_alt rmsk exon 668485 668713 3011 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "461"; repFamily "ERVL"; repLeft "233"; repStart "-5253"; chr19_KI270938v1_alt rmsk exon 669023 669245 3011 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "232"; repFamily "ERVL"; repLeft "3"; repStart "-5482"; chr19_KI270938v1_alt rmsk exon 669259 669292 226 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "404"; repFamily "ERVL"; repLeft "371"; repStart "-10"; chr19_KI270938v1_alt rmsk exon 669399 669554 630 - . gene_id "ERVLB4_19_KI270938v1_alt(d)"; transcript_id "ERVLB4_19_KI270938v1_alt(d)"; locus "ERVLB4_19_KI270938v1_alt(d)"; repName "MLT2D"; geneRegion "ltr"; locid "ERVL-B4-int_2071"; repClass "LTR"; repEnd "358"; repFamily "ERVL"; repLeft "202"; repStart "-56"; ### HERVH_19_KI270938v1_alt(a) ### chr19_KI270938v1_alt rmsk gene 876775 883071 . - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1368"; model_cov "5413"; model_pct "70.2"; chr19_KI270938v1_alt rmsk exon 876775 877187 2829 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270938v1_alt rmsk exon 877188 877557 2367 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "7707"; repFamily "ERV1"; repLeft "7325"; repStart "-6"; chr19_KI270938v1_alt rmsk exon 877558 877773 1451 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270938v1_alt rmsk exon 877775 879563 6197 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "3478"; repStart "-2564"; chr19_KI270938v1_alt rmsk exon 879554 879703 992 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270938v1_alt rmsk exon 879690 882649 20391 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "2992"; repFamily "ERV1"; repLeft "1"; repStart "-4721"; chr19_KI270938v1_alt rmsk exon 882659 883071 2792 - . gene_id "HERVH_19_KI270938v1_alt(a)"; transcript_id "HERVH_19_KI270938v1_alt(a)"; locus "HERVH_19_KI270938v1_alt(a)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1368"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HERVH_19_KI270938v1_alt(b) ### chr19_KI270938v1_alt rmsk gene 989311 994905 . - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; category "prototype"; intModel "HERVH-int"; locid "HERVH-int_1369"; model_cov "4917"; model_pct "63.7"; chr19_KI270938v1_alt rmsk exon 989311 989719 2779 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; chr19_KI270938v1_alt rmsk exon 989720 990096 2212 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "7713"; repFamily "ERV1"; repLeft "7324"; repStart "0"; chr19_KI270938v1_alt rmsk exon 990097 990312 1293 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "5819"; repFamily "ERV1"; repLeft "5600"; repStart "-1894"; chr19_KI270938v1_alt rmsk exon 990314 990982 3096 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "5149"; repFamily "ERV1"; repLeft "4478"; repStart "-2564"; chr19_KI270938v1_alt rmsk exon 990973 991476 3458 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "3994"; repFamily "ERV1"; repLeft "3492"; repStart "-3719"; chr19_KI270938v1_alt rmsk exon 991467 991616 974 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "3290"; repFamily "ERV1"; repLeft "3140"; repStart "-4423"; chr19_KI270938v1_alt rmsk exon 991611 994495 18886 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "HERVH-int"; geneRegion "internal"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "2987"; repFamily "ERV1"; repLeft "1"; repStart "-4726"; chr19_KI270938v1_alt rmsk exon 994498 994905 2723 - . gene_id "HERVH_19_KI270938v1_alt(b)"; transcript_id "HERVH_19_KI270938v1_alt(b)"; locus "HERVH_19_KI270938v1_alt(b)"; repName "LTR7"; geneRegion "ltr"; locid "HERVH-int_1369"; repClass "LTR"; repEnd "448"; repFamily "ERV1"; repLeft "1"; repStart "-2"; ### HUERSP2_21_GL383579v2_alt(a) ### chr21_GL383579v2_alt rmsk gene 17763 18280 . - . gene_id "HUERSP2_21_GL383579v2_alt(a)"; transcript_id "HUERSP2_21_GL383579v2_alt(a)"; locus "HUERSP2_21_GL383579v2_alt(a)"; category "internal"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0142"; model_cov "553"; model_pct "17.9"; chr21_GL383579v2_alt rmsk exon 17763 18280 1968 - . gene_id "HUERSP2_21_GL383579v2_alt(a)"; transcript_id "HUERSP2_21_GL383579v2_alt(a)"; locus "HUERSP2_21_GL383579v2_alt(a)"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0142"; repClass "LTR"; repEnd "555"; repFamily "ERV1"; repLeft "2"; repStart "-2533"; ### HUERSP2_21_GL383579v2_alt(b) ### chr21_GL383579v2_alt rmsk gene 18281 21531 . + . gene_id "HUERSP2_21_GL383579v2_alt(b)"; transcript_id "HUERSP2_21_GL383579v2_alt(b)"; locus "HUERSP2_21_GL383579v2_alt(b)"; category "oneside"; intModel "HUERS-P2-int"; locid "HUERS-P2-int_0143"; model_cov "2583"; model_pct "83.6"; chr21_GL383579v2_alt rmsk exon 18281 20878 14665 + . gene_id "HUERSP2_21_GL383579v2_alt(b)"; transcript_id "HUERSP2_21_GL383579v2_alt(b)"; locus "HUERSP2_21_GL383579v2_alt(b)"; repName "HUERS-P2-int"; geneRegion "internal"; locid "HUERS-P2-int_0143"; repClass "LTR"; repEnd "3088"; repFamily "ERV1"; repLeft "0"; repStart "505"; chr21_GL383579v2_alt rmsk exon 20879 21531 1546 + . gene_id "HUERSP2_21_GL383579v2_alt(b)"; transcript_id "HUERSP2_21_GL383579v2_alt(b)"; locus "HUERSP2_21_GL383579v2_alt(b)"; repName "LTR1A1"; geneRegion "ltr"; locid "HUERS-P2-int_0143"; repClass "LTR"; repEnd "799"; repFamily "ERV1"; repLeft "0"; repStart "58"; ### ERVL_21_GL383579v2_alt ### chr21_GL383579v2_alt rmsk gene 131444 134832 . + . gene_id "ERVL_21_GL383579v2_alt"; transcript_id "ERVL_21_GL383579v2_alt"; locus "ERVL_21_GL383579v2_alt"; category "oneside"; intModel "ERVL-int"; locid "ERVL-int_0526"; model_cov "2494"; model_pct "43.3"; chr21_GL383579v2_alt rmsk exon 131444 131704 12737 + . gene_id "ERVL_21_GL383579v2_alt"; transcript_id "ERVL_21_GL383579v2_alt"; locus "ERVL_21_GL383579v2_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0526"; repClass "LTR"; repEnd "3521"; repFamily "ERVL"; repLeft "-2236"; repStart "3262"; chr21_GL383579v2_alt rmsk exon 132192 134450 12737 + . gene_id "ERVL_21_GL383579v2_alt"; transcript_id "ERVL_21_GL383579v2_alt"; locus "ERVL_21_GL383579v2_alt"; repName "ERVL-int"; geneRegion "internal"; locid "ERVL-int_0526"; repClass "LTR"; repEnd "5757"; repFamily "ERVL"; repLeft "0"; repStart "3522"; chr21_GL383579v2_alt rmsk exon 134451 134832 1441 + . gene_id "ERVL_21_GL383579v2_alt"; transcript_id "ERVL_21_GL383579v2_alt"; locus "ERVL_21_GL383579v2_alt"; repName "MLT2B1"; geneRegion "ltr"; locid "ERVL-int_0526"; repClass "LTR"; repEnd "457"; repFamily "ERVL"; repLeft "-63"; repStart "-41"; ### HERV9_21_KI270874v1_alt ### chr21_KI270874v1_alt rmsk gene 153242 163161 . + . gene_id "HERV9_21_KI270874v1_alt"; transcript_id "HERV9_21_KI270874v1_alt"; locus "HERV9_21_KI270874v1_alt"; category "prototype"; intModel "HERV9-int"; locid "HERV9-int_0243"; model_cov "8375"; model_pct "99.3"; chr21_KI270874v1_alt rmsk exon 153242 153667 2612 + . gene_id "HERV9_21_KI270874v1_alt"; transcript_id "HERV9_21_KI270874v1_alt"; locus "HERV9_21_KI270874v1_alt"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0243"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr21_KI270874v1_alt rmsk exon 153688 161750 57661 + . gene_id "HERV9_21_KI270874v1_alt"; transcript_id "HERV9_21_KI270874v1_alt"; locus "HERV9_21_KI270874v1_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0243"; repClass "LTR"; repEnd "8168"; repFamily "ERV1"; repLeft "-268"; repStart "55"; chr21_KI270874v1_alt rmsk exon 162502 162775 57661 + . gene_id "HERV9_21_KI270874v1_alt"; transcript_id "HERV9_21_KI270874v1_alt"; locus "HERV9_21_KI270874v1_alt"; repName "HERV9-int"; geneRegion "internal"; locid "HERV9-int_0243"; repClass "LTR"; repEnd "8431"; repFamily "ERV1"; repLeft "-5"; repStart "8169"; chr21_KI270874v1_alt rmsk exon 162780 163161 2050 + . gene_id "HERV9_21_KI270874v1_alt"; transcript_id "HERV9_21_KI270874v1_alt"; locus "HERV9_21_KI270874v1_alt"; repName "LTR12F"; geneRegion "ltr"; locid "HERV9-int_0243"; repClass "LTR"; repEnd "519"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HERVIP10F_22_GL383582v2_alt ### chr22_GL383582v2_alt rmsk gene 26809 38263 . - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0133"; model_cov "8075"; model_pct "100.0"; chr22_GL383582v2_alt rmsk exon 26809 27298 2745 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-20"; chr22_GL383582v2_alt rmsk exon 27299 29683 9515 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5369"; repStart "0"; chr22_GL383582v2_alt rmsk exon 31451 32380 18915 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "5296"; repFamily "ERV1"; repLeft "4361"; repStart "-2441"; chr22_GL383582v2_alt rmsk exon 32690 35082 18915 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "4360"; repFamily "ERV1"; repLeft "1946"; repStart "-3377"; chr22_GL383582v2_alt rmsk exon 35083 35157 407 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_GL383582v2_alt rmsk exon 35142 35216 401 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_GL383582v2_alt rmsk exon 35201 35285 408 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1923"; repStart "-5733"; chr22_GL383582v2_alt rmsk exon 35265 35860 11242 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "2115"; repFamily "ERV1"; repLeft "1513"; repStart "-5622"; chr22_GL383582v2_alt rmsk exon 36177 37767 11242 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "1512"; repFamily "ERV1"; repLeft "-47"; repStart "-6225"; chr22_GL383582v2_alt rmsk exon 37771 38263 2844 - . gene_id "HERVIP10F_22_GL383582v2_alt"; transcript_id "HERVIP10F_22_GL383582v2_alt"; locus "HERVIP10F_22_GL383582v2_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0133"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-20"; ### MER101_22_GL383583v2_alt ### chr22_GL383583v2_alt rmsk gene 19251 20982 . + . gene_id "MER101_22_GL383583v2_alt"; transcript_id "MER101_22_GL383583v2_alt"; locus "MER101_22_GL383583v2_alt"; category "internal"; intModel "MER101-int"; locid "MER101-int_0473"; model_cov "1254"; model_pct "18.9"; chr22_GL383583v2_alt rmsk exon 19251 20001 1905 + . gene_id "MER101_22_GL383583v2_alt"; transcript_id "MER101_22_GL383583v2_alt"; locus "MER101_22_GL383583v2_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0473"; repClass "LTR"; repEnd "3337"; repFamily "ERV1"; repLeft "-3302"; repStart "3021"; chr22_GL383583v2_alt rmsk exon 20294 20982 2901 + . gene_id "MER101_22_GL383583v2_alt"; transcript_id "MER101_22_GL383583v2_alt"; locus "MER101_22_GL383583v2_alt"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0473"; repClass "LTR"; repEnd "3777"; repFamily "ERV1"; repLeft "-2862"; repStart "2839"; ### ERVLE_22_GL383583v2_alt ### chr22_GL383583v2_alt rmsk gene 30575 31899 . - . gene_id "ERVLE_22_GL383583v2_alt"; transcript_id "ERVLE_22_GL383583v2_alt"; locus "ERVLE_22_GL383583v2_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3968"; model_cov "1060"; model_pct "18.7"; chr22_GL383583v2_alt rmsk exon 30575 30634 3223 - . gene_id "ERVLE_22_GL383583v2_alt"; transcript_id "ERVLE_22_GL383583v2_alt"; locus "ERVLE_22_GL383583v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3968"; repClass "LTR"; repEnd "5666"; repFamily "ERVL"; repLeft "5596"; repStart "-1"; chr22_GL383583v2_alt rmsk exon 30929 31899 3223 - . gene_id "ERVLE_22_GL383583v2_alt"; transcript_id "ERVLE_22_GL383583v2_alt"; locus "ERVLE_22_GL383583v2_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3968"; repClass "LTR"; repEnd "5595"; repFamily "ERVL"; repLeft "4605"; repStart "-72"; ### HERVIP10F_22_KB663609v1_alt ### chr22_KB663609v1_alt rmsk gene 26814 38263 . - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0134"; model_cov "8075"; model_pct "100.0"; chr22_KB663609v1_alt rmsk exon 26814 27298 2885 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-25"; chr22_KB663609v1_alt rmsk exon 27299 29683 9804 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5369"; repStart "0"; chr22_KB663609v1_alt rmsk exon 31451 32380 19661 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "5296"; repFamily "ERV1"; repLeft "4361"; repStart "-2441"; chr22_KB663609v1_alt rmsk exon 32690 35082 19661 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "4360"; repFamily "ERV1"; repLeft "1946"; repStart "-3377"; chr22_KB663609v1_alt rmsk exon 35083 35157 422 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_KB663609v1_alt rmsk exon 35142 35216 417 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_KB663609v1_alt rmsk exon 35201 35285 426 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1923"; repStart "-5733"; chr22_KB663609v1_alt rmsk exon 35265 35860 11655 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "2115"; repFamily "ERV1"; repLeft "1513"; repStart "-5622"; chr22_KB663609v1_alt rmsk exon 36177 37767 11655 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "1512"; repFamily "ERV1"; repLeft "-47"; repStart "-6225"; chr22_KB663609v1_alt rmsk exon 37771 38263 2608 - . gene_id "HERVIP10F_22_KB663609v1_alt"; transcript_id "HERVIP10F_22_KB663609v1_alt"; locus "HERVIP10F_22_KB663609v1_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0134"; repClass "LTR"; repEnd "503"; repFamily "ERV1"; repLeft "1"; repStart "-20"; ### HERVL_22_KI270875v1_alt(a) ### chr22_KI270875v1_alt rmsk gene 11418 16535 . - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; category "oneside"; intModel "HERVL-int"; locid "HERVL-int_1504"; model_cov "3382"; model_pct "59.8"; chr22_KI270875v1_alt rmsk exon 11418 11806 3025 - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1504"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "55"; repStart "0"; chr22_KI270875v1_alt rmsk exon 12109 12162 3025 - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1504"; repClass "LTR"; repEnd "54"; repFamily "ERVL"; repLeft "1"; repStart "-390"; chr22_KI270875v1_alt rmsk exon 12163 13489 17002 - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1504"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4321"; repStart "0"; chr22_KI270875v1_alt rmsk exon 14077 14525 17002 - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1504"; repClass "LTR"; repEnd "4320"; repFamily "ERVL"; repLeft "3883"; repStart "-1334"; chr22_KI270875v1_alt rmsk exon 14940 16535 17002 - . gene_id "HERVL_22_KI270875v1_alt(a)"; transcript_id "HERVL_22_KI270875v1_alt(a)"; locus "HERVL_22_KI270875v1_alt(a)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1504"; repClass "LTR"; repEnd "3882"; repFamily "ERVL"; repLeft "2270"; repStart "-1772"; ### HERVL_22_KI270875v1_alt(b) ### chr22_KI270875v1_alt rmsk gene 72061 74251 . - . gene_id "HERVL_22_KI270875v1_alt(b)"; transcript_id "HERVL_22_KI270875v1_alt(b)"; locus "HERVL_22_KI270875v1_alt(b)"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1505"; model_cov "1476"; model_pct "26.1"; chr22_KI270875v1_alt rmsk exon 72061 72477 2965 - . gene_id "HERVL_22_KI270875v1_alt(b)"; transcript_id "HERVL_22_KI270875v1_alt(b)"; locus "HERVL_22_KI270875v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1505"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; chr22_KI270875v1_alt rmsk exon 72478 73936 11246 - . gene_id "HERVL_22_KI270875v1_alt(b)"; transcript_id "HERVL_22_KI270875v1_alt(b)"; locus "HERVL_22_KI270875v1_alt(b)"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1505"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "4178"; repStart "0"; chr22_KI270875v1_alt rmsk exon 73937 74251 2531 - . gene_id "HERVL_22_KI270875v1_alt(b)"; transcript_id "HERVL_22_KI270875v1_alt(b)"; locus "HERVL_22_KI270875v1_alt(b)"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1505"; repClass "LTR"; repEnd "315"; repFamily "ERVL"; repLeft "1"; repStart "-129"; ### HERVI_22_KI270875v1_alt ### chr22_KI270875v1_alt rmsk gene 88355 95094 . + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; category "prototype"; intModel "HERVI-int"; locid "HERVI-int_0045"; model_cov "5656"; model_pct "72.7"; chr22_KI270875v1_alt rmsk exon 88355 88910 3672 + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0045"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; chr22_KI270875v1_alt rmsk exon 88914 91052 7552 + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0045"; repClass "LTR"; repEnd "2321"; repFamily "ERV1"; repLeft "-5464"; repStart "186"; chr22_KI270875v1_alt rmsk exon 91037 91336 1426 + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0045"; repClass "LTR"; repEnd "2869"; repFamily "ERV1"; repLeft "-4916"; repStart "2564"; chr22_KI270875v1_alt rmsk exon 91317 94537 17153 + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; repName "HERVI-int"; geneRegion "internal"; locid "HERVI-int_0045"; repClass "LTR"; repEnd "7784"; repFamily "ERV1"; repLeft "-1"; repStart "4568"; chr22_KI270875v1_alt rmsk exon 94541 95094 3770 + . gene_id "HERVI_22_KI270875v1_alt"; transcript_id "HERVI_22_KI270875v1_alt"; locus "HERVI_22_KI270875v1_alt"; repName "LTR10B1"; geneRegion "ltr"; locid "HERVI-int_0045"; repClass "LTR"; repEnd "547"; repFamily "ERV1"; repLeft "0"; repStart "1"; ### HUERSP3_22_KI270875v1_alt ### chr22_KI270875v1_alt rmsk gene 95577 101181 . - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; category "prototype"; intModel "HUERS-P3-int"; locid "HUERS-P3-int_0296"; model_cov "3513"; model_pct "39.4"; chr22_KI270875v1_alt rmsk exon 95577 96179 2955 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "666"; repFamily "ERV1"; repLeft "5"; repStart "0"; chr22_KI270875v1_alt rmsk exon 96182 96465 1450 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "8919"; repFamily "ERV1"; repLeft "8659"; repStart "0"; chr22_KI270875v1_alt rmsk exon 96953 97027 357 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "8435"; repFamily "ERV1"; repLeft "8355"; repStart "-484"; chr22_KI270875v1_alt rmsk exon 97047 97366 1671 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "6912"; repFamily "ERV1"; repLeft "6594"; repStart "-2007"; chr22_KI270875v1_alt rmsk exon 97884 98297 2837 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "6578"; repFamily "ERV1"; repLeft "6162"; repStart "-2341"; chr22_KI270875v1_alt rmsk exon 98269 98940 4347 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "5592"; repFamily "ERV1"; repLeft "4901"; repStart "-3327"; chr22_KI270875v1_alt rmsk exon 98944 99080 845 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "4676"; repFamily "ERV1"; repLeft "4539"; repStart "-4243"; chr22_KI270875v1_alt rmsk exon 99074 99272 1271 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "3284"; repFamily "ERV1"; repLeft "3078"; repStart "-5635"; chr22_KI270875v1_alt rmsk exon 99262 100569 3765 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "HUERS-P3-int"; geneRegion "internal"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "1406"; repFamily "ERV1"; repLeft "1"; repStart "-7513"; chr22_KI270875v1_alt rmsk exon 100572 101181 2774 - . gene_id "HUERSP3_22_KI270875v1_alt"; transcript_id "HUERSP3_22_KI270875v1_alt"; locus "HUERSP3_22_KI270875v1_alt"; repName "LTR9C"; geneRegion "ltr"; locid "HUERS-P3-int_0296"; repClass "LTR"; repEnd "665"; repFamily "ERV1"; repLeft "1"; repStart "-1"; ### ERVLE_22_KI270879v1_alt ### chr22_KI270879v1_alt rmsk gene 108237 109387 . - . gene_id "ERVLE_22_KI270879v1_alt"; transcript_id "ERVLE_22_KI270879v1_alt"; locus "ERVLE_22_KI270879v1_alt"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3969"; model_cov "646"; model_pct "11.4"; chr22_KI270879v1_alt rmsk exon 108237 108400 537 - . gene_id "ERVLE_22_KI270879v1_alt"; transcript_id "ERVLE_22_KI270879v1_alt"; locus "ERVLE_22_KI270879v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3969"; repClass "LTR"; repEnd "3402"; repFamily "ERVL"; repLeft "3228"; repStart "-2265"; chr22_KI270879v1_alt rmsk exon 108931 109387 1233 - . gene_id "ERVLE_22_KI270879v1_alt"; transcript_id "ERVLE_22_KI270879v1_alt"; locus "ERVLE_22_KI270879v1_alt"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3969"; repClass "LTR"; repEnd "3040"; repFamily "ERVL"; repLeft "2568"; repStart "-2627"; ### PRIMA41_22_KI270879v1_alt ### chr22_KI270879v1_alt rmsk gene 151521 156230 . + . gene_id "PRIMA41_22_KI270879v1_alt"; transcript_id "PRIMA41_22_KI270879v1_alt"; locus "PRIMA41_22_KI270879v1_alt"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0196"; model_cov "1215"; model_pct "15.7"; chr22_KI270879v1_alt rmsk exon 151521 151769 424 + . gene_id "PRIMA41_22_KI270879v1_alt"; transcript_id "PRIMA41_22_KI270879v1_alt"; locus "PRIMA41_22_KI270879v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0196"; repClass "LTR"; repEnd "3940"; repFamily "ERV1"; repLeft "-3816"; repStart "3514"; chr22_KI270879v1_alt rmsk exon 152248 152700 796 + . gene_id "PRIMA41_22_KI270879v1_alt"; transcript_id "PRIMA41_22_KI270879v1_alt"; locus "PRIMA41_22_KI270879v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0196"; repClass "LTR"; repEnd "5838"; repFamily "ERV1"; repLeft "-1918"; repStart "5387"; chr22_KI270879v1_alt rmsk exon 155190 155442 341 + . gene_id "PRIMA41_22_KI270879v1_alt"; transcript_id "PRIMA41_22_KI270879v1_alt"; locus "PRIMA41_22_KI270879v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0196"; repClass "LTR"; repEnd "7235"; repFamily "ERV1"; repLeft "-521"; repStart "7081"; chr22_KI270879v1_alt rmsk exon 156034 156230 320 + . gene_id "PRIMA41_22_KI270879v1_alt"; transcript_id "PRIMA41_22_KI270879v1_alt"; locus "PRIMA41_22_KI270879v1_alt"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0196"; repClass "LTR"; repEnd "7505"; repFamily "ERV1"; repLeft "-251"; repStart "7321"; ### HERVIP10F_22_KI270928v1_alt ### chr22_KI270928v1_alt rmsk gene 26814 38263 . - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; category "prototype"; intModel "HERVIP10F-int"; locid "HERVIP10F-int_0136"; model_cov "8075"; model_pct "100.0"; chr22_KI270928v1_alt rmsk exon 26814 27298 2885 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-25"; chr22_KI270928v1_alt rmsk exon 27299 29683 9804 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "7737"; repFamily "ERV1"; repLeft "5369"; repStart "0"; chr22_KI270928v1_alt rmsk exon 31451 32380 19661 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "5296"; repFamily "ERV1"; repLeft "4361"; repStart "-2441"; chr22_KI270928v1_alt rmsk exon 32690 35082 19661 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "4360"; repFamily "ERV1"; repLeft "1946"; repStart "-3377"; chr22_KI270928v1_alt rmsk exon 35083 35157 422 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_KI270928v1_alt rmsk exon 35142 35216 417 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1946"; repStart "-5733"; chr22_KI270928v1_alt rmsk exon 35201 35285 426 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "2004"; repFamily "ERV1"; repLeft "1923"; repStart "-5733"; chr22_KI270928v1_alt rmsk exon 35265 35860 11655 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "2115"; repFamily "ERV1"; repLeft "1513"; repStart "-5622"; chr22_KI270928v1_alt rmsk exon 36177 37767 11655 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "HERVIP10F-int"; geneRegion "internal"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "1512"; repFamily "ERV1"; repLeft "-47"; repStart "-6225"; chr22_KI270928v1_alt rmsk exon 37776 38263 2990 - . gene_id "HERVIP10F_22_KI270928v1_alt"; transcript_id "HERVIP10F_22_KI270928v1_alt"; locus "HERVIP10F_22_KI270928v1_alt"; repName "LTR10G"; geneRegion "ltr"; locid "HERVIP10F-int_0136"; repClass "LTR"; repEnd "498"; repFamily "ERV1"; repLeft "1"; repStart "-25"; ### HML3_X_KI270881v1_alt ### chrX_KI270881v1_alt rmsk gene 48811 54449 . - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; category "prototype"; intModel "HERVK9-int"; locid "HERVK9-int_0287"; model_cov "4633"; model_pct "76.9"; chrX_KI270881v1_alt rmsk exon 48811 49302 3754 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX_KI270881v1_alt rmsk exon 49303 52219 23497 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "6021"; repFamily "ERVK"; repLeft "3104"; repStart "0"; chrX_KI270881v1_alt rmsk exon 52218 52252 264 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "2850"; repFamily "ERVK"; repLeft "2816"; repStart "-3171"; chrX_KI270881v1_alt rmsk exon 52249 53256 7973 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "2646"; repFamily "ERVK"; repLeft "1637"; repStart "-3375"; chrX_KI270881v1_alt rmsk exon 53257 53925 5043 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "674"; repFamily "ERVK"; repLeft "1"; repStart "-5347"; chrX_KI270881v1_alt rmsk exon 53926 54449 3525 - . gene_id "HML3_X_KI270881v1_alt"; transcript_id "HML3_X_KI270881v1_alt"; locus "HML3_X_KI270881v1_alt"; repName "MER9a3"; geneRegion "ltr"; locid "HERVK9-int_0287"; repClass "LTR"; repEnd "512"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### MER4_1_KI270706v1_random ### chr1_KI270706v1_random rmsk gene 43776 44766 . - . gene_id "MER4_1_KI270706v1_random"; transcript_id "MER4_1_KI270706v1_random"; locus "MER4_1_KI270706v1_random"; category "internal"; intModel "MER4-int"; locid "MER4-int_1049"; model_cov "941"; model_pct "14.3"; chr1_KI270706v1_random rmsk exon 43776 43983 664 - . gene_id "MER4_1_KI270706v1_random"; transcript_id "MER4_1_KI270706v1_random"; locus "MER4_1_KI270706v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1049"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "865"; repStart "-5501"; chr1_KI270706v1_random rmsk exon 44089 44198 437 - . gene_id "MER4_1_KI270706v1_random"; transcript_id "MER4_1_KI270706v1_random"; locus "MER4_1_KI270706v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1049"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-723"; repStart "-7235"; chr1_KI270706v1_random rmsk exon 44205 44766 2403 - . gene_id "MER4_1_KI270706v1_random"; transcript_id "MER4_1_KI270706v1_random"; locus "MER4_1_KI270706v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1049"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### HML1_1_KI270708v1_random ### chr1_KI270708v1_random rmsk gene 10042 12101 . + . gene_id "HML1_1_KI270708v1_random"; transcript_id "HML1_1_KI270708v1_random"; locus "HML1_1_KI270708v1_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0154"; model_cov "1786"; model_pct "29.3"; chr1_KI270708v1_random rmsk exon 10042 10325 2017 + . gene_id "HML1_1_KI270708v1_random"; transcript_id "HML1_1_KI270708v1_random"; locus "HML1_1_KI270708v1_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0154"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1_KI270708v1_random rmsk exon 10326 10426 658 + . gene_id "HML1_1_KI270708v1_random"; transcript_id "HML1_1_KI270708v1_random"; locus "HML1_1_KI270708v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0154"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "-5994"; repStart "1"; chr1_KI270708v1_random rmsk exon 10421 12101 12157 + . gene_id "HML1_1_KI270708v1_random"; transcript_id "HML1_1_KI270708v1_random"; locus "HML1_1_KI270708v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0154"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "204"; ### HML3_1_KI270708v1_random ### chr1_KI270708v1_random rmsk gene 12102 15919 . + . gene_id "HML3_1_KI270708v1_random"; transcript_id "HML3_1_KI270708v1_random"; locus "HML3_1_KI270708v1_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0288"; model_cov "3347"; model_pct "55.6"; chr1_KI270708v1_random rmsk exon 12102 12546 3463 + . gene_id "HML3_1_KI270708v1_random"; transcript_id "HML3_1_KI270708v1_random"; locus "HML3_1_KI270708v1_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0288"; repClass "LTR"; repEnd "511"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr1_KI270708v1_random rmsk exon 12549 15363 20607 + . gene_id "HML3_1_KI270708v1_random"; transcript_id "HML3_1_KI270708v1_random"; locus "HML3_1_KI270708v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0288"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr1_KI270708v1_random rmsk exon 15364 15593 1800 + . gene_id "HML3_1_KI270708v1_random"; transcript_id "HML3_1_KI270708v1_random"; locus "HML3_1_KI270708v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0288"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr1_KI270708v1_random rmsk exon 15595 15919 2175 + . gene_id "HML3_1_KI270708v1_random"; transcript_id "HML3_1_KI270708v1_random"; locus "HML3_1_KI270708v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0288"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### ERVLE_1_KI270711v1_random ### chr1_KI270711v1_random rmsk gene 40148 40754 . - . gene_id "ERVLE_1_KI270711v1_random"; transcript_id "ERVLE_1_KI270711v1_random"; locus "ERVLE_1_KI270711v1_random"; category "internal"; intModel "ERVL-E-int"; locid "ERVL-E-int_3970"; model_cov "600"; model_pct "10.6"; chr1_KI270711v1_random rmsk exon 40148 40514 732 - . gene_id "ERVLE_1_KI270711v1_random"; transcript_id "ERVLE_1_KI270711v1_random"; locus "ERVLE_1_KI270711v1_random"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3970"; repClass "LTR"; repEnd "1897"; repFamily "ERVL"; repLeft "1518"; repStart "-3770"; chr1_KI270711v1_random rmsk exon 40532 40754 607 - . gene_id "ERVLE_1_KI270711v1_random"; transcript_id "ERVLE_1_KI270711v1_random"; locus "ERVLE_1_KI270711v1_random"; repName "ERVL-E-int"; geneRegion "internal"; locid "ERVL-E-int_3970"; repClass "LTR"; repEnd "1462"; repFamily "ERVL"; repLeft "1241"; repStart "-4205"; ### ERVLB4_1_KI270712v1_random ### chr1_KI270712v1_random rmsk gene 73046 74190 . - . gene_id "ERVLB4_1_KI270712v1_random"; transcript_id "ERVLB4_1_KI270712v1_random"; locus "ERVLB4_1_KI270712v1_random"; category "oneside"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2073"; model_cov "1019"; model_pct "17.8"; chr1_KI270712v1_random rmsk exon 73046 73852 3471 - . gene_id "ERVLB4_1_KI270712v1_random"; transcript_id "ERVLB4_1_KI270712v1_random"; locus "ERVLB4_1_KI270712v1_random"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2073"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "1135"; repStart "-3747"; chr1_KI270712v1_random rmsk exon 73973 74160 1047 - . gene_id "ERVLB4_1_KI270712v1_random"; transcript_id "ERVLB4_1_KI270712v1_random"; locus "ERVLB4_1_KI270712v1_random"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2073"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "957"; repStart "-4570"; chr1_KI270712v1_random rmsk exon 74172 74190 287 - . gene_id "ERVLB4_1_KI270712v1_random"; transcript_id "ERVLB4_1_KI270712v1_random"; locus "ERVLB4_1_KI270712v1_random"; repName "MLT2C1"; geneRegion "ltr"; locid "ERVL-B4-int_2073"; repClass "LTR"; repEnd "356"; repFamily "ERVL"; repLeft "339"; repStart "-41"; ### PRIMA41_1_KI270713v1_random ### chr1_KI270713v1_random rmsk gene 25544 27465 . - . gene_id "PRIMA41_1_KI270713v1_random"; transcript_id "PRIMA41_1_KI270713v1_random"; locus "PRIMA41_1_KI270713v1_random"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0197"; model_cov "1626"; model_pct "21.0"; chr1_KI270713v1_random rmsk exon 25544 26457 2462 - . gene_id "PRIMA41_1_KI270713v1_random"; transcript_id "PRIMA41_1_KI270713v1_random"; locus "PRIMA41_1_KI270713v1_random"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0197"; repClass "LTR"; repEnd "5699"; repFamily "ERV1"; repLeft "4755"; repStart "-2057"; chr1_KI270713v1_random rmsk exon 26748 27465 2462 - . gene_id "PRIMA41_1_KI270713v1_random"; transcript_id "PRIMA41_1_KI270713v1_random"; locus "PRIMA41_1_KI270713v1_random"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0197"; repClass "LTR"; repEnd "4754"; repFamily "ERV1"; repLeft "4072"; repStart "-3002"; ### HML3_3_GL000221v1_random ### chr3_GL000221v1_random rmsk gene 100685 104489 . - . gene_id "HML3_3_GL000221v1_random"; transcript_id "HML3_3_GL000221v1_random"; locus "HML3_3_GL000221v1_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0290"; model_cov "3347"; model_pct "55.6"; chr3_GL000221v1_random rmsk exon 100685 101009 2294 - . gene_id "HML3_3_GL000221v1_random"; transcript_id "HML3_3_GL000221v1_random"; locus "HML3_3_GL000221v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0290"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "4595"; repStart "-1105"; chr3_GL000221v1_random rmsk exon 101011 101240 2006 - . gene_id "HML3_3_GL000221v1_random"; transcript_id "HML3_3_GL000221v1_random"; locus "HML3_3_GL000221v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0290"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr3_GL000221v1_random rmsk exon 101241 104042 22250 - . gene_id "HML3_3_GL000221v1_random"; transcript_id "HML3_3_GL000221v1_random"; locus "HML3_3_GL000221v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0290"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr3_GL000221v1_random rmsk exon 104043 104489 3459 - . gene_id "HML3_3_GL000221v1_random"; transcript_id "HML3_3_GL000221v1_random"; locus "HML3_3_GL000221v1_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0290"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_3_GL000221v1_random ### chr3_GL000221v1_random rmsk gene 104490 106551 . - . gene_id "HML1_3_GL000221v1_random"; transcript_id "HML1_3_GL000221v1_random"; locus "HML1_3_GL000221v1_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0155"; model_cov "1888"; model_pct "31.0"; chr3_GL000221v1_random rmsk exon 104490 106267 12944 - . gene_id "HML1_3_GL000221v1_random"; transcript_id "HML1_3_GL000221v1_random"; locus "HML1_3_GL000221v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0155"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "1"; repStart "-4207"; chr3_GL000221v1_random rmsk exon 106268 106551 2025 - . gene_id "HML1_3_GL000221v1_random"; transcript_id "HML1_3_GL000221v1_random"; locus "HML1_3_GL000221v1_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0155"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_4_GL000008v2_random ### chr4_GL000008v2_random rmsk gene 56768 58824 . + . gene_id "HML1_4_GL000008v2_random"; transcript_id "HML1_4_GL000008v2_random"; locus "HML1_4_GL000008v2_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0156"; model_cov "1786"; model_pct "29.3"; chr4_GL000008v2_random rmsk exon 56768 57048 2024 + . gene_id "HML1_4_GL000008v2_random"; transcript_id "HML1_4_GL000008v2_random"; locus "HML1_4_GL000008v2_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0156"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4_GL000008v2_random rmsk exon 57049 57149 646 + . gene_id "HML1_4_GL000008v2_random"; transcript_id "HML1_4_GL000008v2_random"; locus "HML1_4_GL000008v2_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0156"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "-5994"; repStart "1"; chr4_GL000008v2_random rmsk exon 57144 58824 13061 + . gene_id "HML1_4_GL000008v2_random"; transcript_id "HML1_4_GL000008v2_random"; locus "HML1_4_GL000008v2_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0156"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "204"; ### HML3_4_GL000008v2_random ### chr4_GL000008v2_random rmsk gene 58825 62629 . + . gene_id "HML3_4_GL000008v2_random"; transcript_id "HML3_4_GL000008v2_random"; locus "HML3_4_GL000008v2_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0291"; model_cov "3347"; model_pct "55.6"; chr4_GL000008v2_random rmsk exon 58825 59275 3569 + . gene_id "HML3_4_GL000008v2_random"; transcript_id "HML3_4_GL000008v2_random"; locus "HML3_4_GL000008v2_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0291"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4_GL000008v2_random rmsk exon 59276 62073 22149 + . gene_id "HML3_4_GL000008v2_random"; transcript_id "HML3_4_GL000008v2_random"; locus "HML3_4_GL000008v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0291"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr4_GL000008v2_random rmsk exon 62074 62303 1910 + . gene_id "HML3_4_GL000008v2_random"; transcript_id "HML3_4_GL000008v2_random"; locus "HML3_4_GL000008v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0291"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr4_GL000008v2_random rmsk exon 62305 62629 2382 + . gene_id "HML3_4_GL000008v2_random"; transcript_id "HML3_4_GL000008v2_random"; locus "HML3_4_GL000008v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0291"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### MER4_4_GL000008v2_random ### chr4_GL000008v2_random rmsk gene 129641 130629 . - . gene_id "MER4_4_GL000008v2_random"; transcript_id "MER4_4_GL000008v2_random"; locus "MER4_4_GL000008v2_random"; category "internal"; intModel "MER4-int"; locid "MER4-int_1051"; model_cov "942"; model_pct "14.3"; chr4_GL000008v2_random rmsk exon 129641 129848 618 - . gene_id "MER4_4_GL000008v2_random"; transcript_id "MER4_4_GL000008v2_random"; locus "MER4_4_GL000008v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1051"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "865"; repStart "-5501"; chr4_GL000008v2_random rmsk exon 129976 130061 437 - . gene_id "MER4_4_GL000008v2_random"; transcript_id "MER4_4_GL000008v2_random"; locus "MER4_4_GL000008v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1051"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-723"; repStart "-7235"; chr4_GL000008v2_random rmsk exon 130067 130629 2376 - . gene_id "MER4_4_GL000008v2_random"; transcript_id "MER4_4_GL000008v2_random"; locus "MER4_4_GL000008v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1051"; repClass "LTR"; repEnd "653"; repFamily "ERV1"; repLeft "29"; repStart "-5945"; ### HERVL_9_KI270717v1_random ### chr9_KI270717v1_random rmsk gene 10444 14498 . - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1507"; model_cov "3251"; model_pct "57.5"; chr9_KI270717v1_random rmsk exon 10444 10826 2656 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr9_KI270717v1_random rmsk exon 10827 13266 13784 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr9_KI270717v1_random rmsk exon 13260 13757 3404 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr9_KI270717v1_random rmsk exon 13747 14009 1685 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr9_KI270717v1_random rmsk exon 14010 14052 2646 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "387"; repStart "0"; chr9_KI270717v1_random rmsk exon 14114 14498 2646 - . gene_id "HERVL_9_KI270717v1_random"; transcript_id "HERVL_9_KI270717v1_random"; locus "HERVL_9_KI270717v1_random"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1507"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; ### MER4_14_GL000009v2_random ### chr14_GL000009v2_random rmsk gene 82623 83608 . + . gene_id "MER4_14_GL000009v2_random"; transcript_id "MER4_14_GL000009v2_random"; locus "MER4_14_GL000009v2_random"; category "internal"; intModel "MER4-int"; locid "MER4-int_1052"; model_cov "942"; model_pct "14.3"; chr14_GL000009v2_random rmsk exon 82623 83182 2355 + . gene_id "MER4_14_GL000009v2_random"; transcript_id "MER4_14_GL000009v2_random"; locus "MER4_14_GL000009v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1052"; repClass "LTR"; repEnd "653"; repFamily "ERV1"; repLeft "-5945"; repStart "29"; chr14_GL000009v2_random rmsk exon 83188 83297 461 + . gene_id "MER4_14_GL000009v2_random"; transcript_id "MER4_14_GL000009v2_random"; locus "MER4_14_GL000009v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1052"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-7235"; repStart "-723"; chr14_GL000009v2_random rmsk exon 83401 83608 658 + . gene_id "MER4_14_GL000009v2_random"; transcript_id "MER4_14_GL000009v2_random"; locus "MER4_14_GL000009v2_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1052"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "-5501"; repStart "865"; ### HML3_14_GL000009v2_random ### chr14_GL000009v2_random rmsk gene 145565 149374 . - . gene_id "HML3_14_GL000009v2_random"; transcript_id "HML3_14_GL000009v2_random"; locus "HML3_14_GL000009v2_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0292"; model_cov "3346"; model_pct "55.6"; chr14_GL000009v2_random rmsk exon 145565 145888 2386 - . gene_id "HML3_14_GL000009v2_random"; transcript_id "HML3_14_GL000009v2_random"; locus "HML3_14_GL000009v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0292"; repClass "LTR"; repEnd "4915"; repFamily "ERVK"; repLeft "4595"; repStart "-1106"; chr14_GL000009v2_random rmsk exon 145890 146139 1845 - . gene_id "HML3_14_GL000009v2_random"; transcript_id "HML3_14_GL000009v2_random"; locus "HML3_14_GL000009v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0292"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr14_GL000009v2_random rmsk exon 146120 148923 21954 - . gene_id "HML3_14_GL000009v2_random"; transcript_id "HML3_14_GL000009v2_random"; locus "HML3_14_GL000009v2_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0292"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr14_GL000009v2_random rmsk exon 148924 149374 3475 - . gene_id "HML3_14_GL000009v2_random"; transcript_id "HML3_14_GL000009v2_random"; locus "HML3_14_GL000009v2_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0292"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_14_GL000009v2_random ### chr14_GL000009v2_random rmsk gene 149375 151433 . - . gene_id "HML1_14_GL000009v2_random"; transcript_id "HML1_14_GL000009v2_random"; locus "HML1_14_GL000009v2_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0157"; model_cov "1786"; model_pct "29.3"; chr14_GL000009v2_random rmsk exon 149375 151058 13191 - . gene_id "HML1_14_GL000009v2_random"; transcript_id "HML1_14_GL000009v2_random"; locus "HML1_14_GL000009v2_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0157"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "204"; repStart "-4207"; chr14_GL000009v2_random rmsk exon 151053 151153 655 - . gene_id "HML1_14_GL000009v2_random"; transcript_id "HML1_14_GL000009v2_random"; locus "HML1_14_GL000009v2_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0157"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "1"; repStart "-5994"; chr14_GL000009v2_random rmsk exon 151154 151433 1920 - . gene_id "HML1_14_GL000009v2_random"; transcript_id "HML1_14_GL000009v2_random"; locus "HML1_14_GL000009v2_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0157"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML3_14_GL000194v1_random ### chr14_GL000194v1_random rmsk gene 135803 139617 . - . gene_id "HML3_14_GL000194v1_random"; transcript_id "HML3_14_GL000194v1_random"; locus "HML3_14_GL000194v1_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0293"; model_cov "3346"; model_pct "55.6"; chr14_GL000194v1_random rmsk exon 135803 136123 2217 - . gene_id "HML3_14_GL000194v1_random"; transcript_id "HML3_14_GL000194v1_random"; locus "HML3_14_GL000194v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0293"; repClass "LTR"; repEnd "4915"; repFamily "ERVK"; repLeft "4595"; repStart "-1106"; chr14_GL000194v1_random rmsk exon 136126 136355 1862 - . gene_id "HML3_14_GL000194v1_random"; transcript_id "HML3_14_GL000194v1_random"; locus "HML3_14_GL000194v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0293"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chr14_GL000194v1_random rmsk exon 136356 139167 22030 - . gene_id "HML3_14_GL000194v1_random"; transcript_id "HML3_14_GL000194v1_random"; locus "HML3_14_GL000194v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0293"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chr14_GL000194v1_random rmsk exon 139168 139617 3549 - . gene_id "HML3_14_GL000194v1_random"; transcript_id "HML3_14_GL000194v1_random"; locus "HML3_14_GL000194v1_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0293"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_14_GL000194v1_random ### chr14_GL000194v1_random rmsk gene 139618 141676 . - . gene_id "HML1_14_GL000194v1_random"; transcript_id "HML1_14_GL000194v1_random"; locus "HML1_14_GL000194v1_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0158"; model_cov "1786"; model_pct "29.3"; chr14_GL000194v1_random rmsk exon 139618 141301 13322 - . gene_id "HML1_14_GL000194v1_random"; transcript_id "HML1_14_GL000194v1_random"; locus "HML1_14_GL000194v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0158"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "204"; repStart "-4207"; chr14_GL000194v1_random rmsk exon 141296 141396 659 - . gene_id "HML1_14_GL000194v1_random"; transcript_id "HML1_14_GL000194v1_random"; locus "HML1_14_GL000194v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0158"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "1"; repStart "-5994"; chr14_GL000194v1_random rmsk exon 141397 141676 2018 - . gene_id "HML1_14_GL000194v1_random"; transcript_id "HML1_14_GL000194v1_random"; locus "HML1_14_GL000194v1_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0158"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_14_KI270722v1_random ### chr14_KI270722v1_random rmsk gene 41034 43093 . + . gene_id "HML1_14_KI270722v1_random"; transcript_id "HML1_14_KI270722v1_random"; locus "HML1_14_KI270722v1_random"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0159"; model_cov "1888"; model_pct "31.0"; chr14_KI270722v1_random rmsk exon 41034 41317 2025 + . gene_id "HML1_14_KI270722v1_random"; transcript_id "HML1_14_KI270722v1_random"; locus "HML1_14_KI270722v1_random"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0159"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr14_KI270722v1_random rmsk exon 41318 43093 12961 + . gene_id "HML1_14_KI270722v1_random"; transcript_id "HML1_14_KI270722v1_random"; locus "HML1_14_KI270722v1_random"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0159"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "1"; ### HML3_14_KI270722v1_random ### chr14_KI270722v1_random rmsk gene 43094 46900 . + . gene_id "HML3_14_KI270722v1_random"; transcript_id "HML3_14_KI270722v1_random"; locus "HML3_14_KI270722v1_random"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0294"; model_cov "3348"; model_pct "55.6"; chr14_KI270722v1_random rmsk exon 43094 43539 3388 + . gene_id "HML3_14_KI270722v1_random"; transcript_id "HML3_14_KI270722v1_random"; locus "HML3_14_KI270722v1_random"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0294"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr14_KI270722v1_random rmsk exon 43540 46343 21957 + . gene_id "HML3_14_KI270722v1_random"; transcript_id "HML3_14_KI270722v1_random"; locus "HML3_14_KI270722v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0294"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chr14_KI270722v1_random rmsk exon 46344 46573 1893 + . gene_id "HML3_14_KI270722v1_random"; transcript_id "HML3_14_KI270722v1_random"; locus "HML3_14_KI270722v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0294"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chr14_KI270722v1_random rmsk exon 46580 46900 2302 + . gene_id "HML3_14_KI270722v1_random"; transcript_id "HML3_14_KI270722v1_random"; locus "HML3_14_KI270722v1_random"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0294"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4594"; ### MER101_14_KI270722v1_random(a) ### chr14_KI270722v1_random rmsk gene 159901 160979 . + . gene_id "MER101_14_KI270722v1_random(a)"; transcript_id "MER101_14_KI270722v1_random(a)"; locus "MER101_14_KI270722v1_random(a)"; category "internal"; intModel "MER101-int"; locid "MER101-int_0476"; model_cov "1337"; model_pct "20.1"; chr14_KI270722v1_random rmsk exon 159901 160742 3133 + . gene_id "MER101_14_KI270722v1_random(a)"; transcript_id "MER101_14_KI270722v1_random(a)"; locus "MER101_14_KI270722v1_random(a)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0476"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "-3701"; repStart "1699"; chr14_KI270722v1_random rmsk exon 160728 160979 1407 + . gene_id "MER101_14_KI270722v1_random(a)"; transcript_id "MER101_14_KI270722v1_random(a)"; locus "MER101_14_KI270722v1_random(a)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0476"; repClass "LTR"; repEnd "5033"; repFamily "ERV1"; repLeft "-1606"; repStart "4935"; ### MER101_14_KI270722v1_random(b) ### chr14_KI270722v1_random rmsk gene 161224 163246 . + . gene_id "MER101_14_KI270722v1_random(b)"; transcript_id "MER101_14_KI270722v1_random(b)"; locus "MER101_14_KI270722v1_random(b)"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0477"; model_cov "1913"; model_pct "28.8"; chr14_KI270722v1_random rmsk exon 161224 162305 3048 + . gene_id "MER101_14_KI270722v1_random(b)"; transcript_id "MER101_14_KI270722v1_random(b)"; locus "MER101_14_KI270722v1_random(b)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0477"; repClass "LTR"; repEnd "4616"; repFamily "ERV1"; repLeft "-2023"; repStart "3331"; chr14_KI270722v1_random rmsk exon 162320 162925 2011 + . gene_id "MER101_14_KI270722v1_random(b)"; transcript_id "MER101_14_KI270722v1_random(b)"; locus "MER101_14_KI270722v1_random(b)"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0477"; repClass "LTR"; repEnd "6639"; repFamily "ERV1"; repLeft "0"; repStart "6011"; chr14_KI270722v1_random rmsk exon 162927 163246 2051 + . gene_id "MER101_14_KI270722v1_random(b)"; transcript_id "MER101_14_KI270722v1_random(b)"; locus "MER101_14_KI270722v1_random(b)"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0477"; repClass "LTR"; repEnd "322"; repFamily "ERV1"; repLeft "-123"; repStart "2"; ### HERV3_14_KI270722v1_random ### chr14_KI270722v1_random rmsk gene 175575 181663 . + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0112"; model_cov "4821"; model_pct "57.2"; chr14_KI270722v1_random rmsk exon 175575 175651 459 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "481"; chr14_KI270722v1_random rmsk exon 175652 177791 6450 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "2008"; repFamily "ERV1"; repLeft "-6418"; repStart "1"; chr14_KI270722v1_random rmsk exon 178346 178820 2377 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "2476"; repFamily "ERV1"; repLeft "-5950"; repStart "1992"; chr14_KI270722v1_random rmsk exon 178813 178949 601 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "3824"; repFamily "ERV1"; repLeft "-4602"; repStart "3701"; chr14_KI270722v1_random rmsk exon 178965 179336 2145 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "5539"; repFamily "ERV1"; repLeft "-2887"; repStart "5166"; chr14_KI270722v1_random rmsk exon 179324 181151 7285 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "6592"; chr14_KI270722v1_random rmsk exon 181154 181663 3505 + . gene_id "HERV3_14_KI270722v1_random"; transcript_id "HERV3_14_KI270722v1_random"; locus "HERV3_14_KI270722v1_random"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0112"; repClass "LTR"; repEnd "496"; repFamily "ERV1"; repLeft "-63"; repStart "1"; ### HERVL_14_KI270725v1_random ### chr14_KI270725v1_random rmsk gene 81020 85032 . - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; category "prototype"; intModel "HERVL-int"; locid "HERVL-int_1509"; model_cov "3251"; model_pct "57.5"; chr14_KI270725v1_random rmsk exon 81020 81403 2633 - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1509"; repClass "LTR"; repEnd "386"; repFamily "ERVL"; repLeft "1"; repStart "-58"; chr14_KI270725v1_random rmsk exon 81404 83835 13329 - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1509"; repClass "LTR"; repEnd "5654"; repFamily "ERVL"; repLeft "3162"; repStart "0"; chr14_KI270725v1_random rmsk exon 83829 84326 3353 - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1509"; repClass "LTR"; repEnd "1814"; repFamily "ERVL"; repLeft "1317"; repStart "-3840"; chr14_KI270725v1_random rmsk exon 84316 84578 1723 - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; repName "HERVL-int"; geneRegion "internal"; locid "HERVL-int_1509"; repClass "LTR"; repEnd "263"; repFamily "ERVL"; repLeft "1"; repStart "-5391"; chr14_KI270725v1_random rmsk exon 84579 85032 2674 - . gene_id "HERVL_14_KI270725v1_random"; transcript_id "HERVL_14_KI270725v1_random"; locus "HERVL_14_KI270725v1_random"; repName "MLT2A1"; geneRegion "ltr"; locid "HERVL-int_1509"; repClass "LTR"; repEnd "444"; repFamily "ERVL"; repLeft "1"; repStart "0"; ### PRIMA41_14_KI270726v1_random ### chr14_KI270726v1_random rmsk gene 10293 11383 . + . gene_id "PRIMA41_14_KI270726v1_random"; transcript_id "PRIMA41_14_KI270726v1_random"; locus "PRIMA41_14_KI270726v1_random"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0198"; model_cov "1022"; model_pct "13.2"; chr14_KI270726v1_random rmsk exon 10293 10419 288 + . gene_id "PRIMA41_14_KI270726v1_random"; transcript_id "PRIMA41_14_KI270726v1_random"; locus "PRIMA41_14_KI270726v1_random"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0198"; repClass "LTR"; repEnd "6454"; repFamily "ERV1"; repLeft "-1302"; repStart "6329"; chr14_KI270726v1_random rmsk exon 10490 11383 1567 + . gene_id "PRIMA41_14_KI270726v1_random"; transcript_id "PRIMA41_14_KI270726v1_random"; locus "PRIMA41_14_KI270726v1_random"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0198"; repClass "LTR"; repEnd "7506"; repFamily "ERV1"; repLeft "-250"; repStart "6609"; ### MER4B_14_KI270726v1_random ### chr14_KI270726v1_random rmsk gene 30438 31196 . + . gene_id "MER4B_14_KI270726v1_random"; transcript_id "MER4B_14_KI270726v1_random"; locus "MER4B_14_KI270726v1_random"; category "internal"; intModel "MER4B-int"; locid "MER4B-int_0618"; model_cov "767"; model_pct "11.3"; chr14_KI270726v1_random rmsk exon 30438 31196 913 + . gene_id "MER4B_14_KI270726v1_random"; transcript_id "MER4B_14_KI270726v1_random"; locus "MER4B_14_KI270726v1_random"; repName "MER4B-int"; geneRegion "internal"; locid "MER4B-int_0618"; repClass "LTR"; repEnd "3929"; repFamily "ERV1"; repLeft "-2829"; repStart "3162"; ### MER4_15_KI270727v1_random ### chr15_KI270727v1_random rmsk gene 131169 132108 . - . gene_id "MER4_15_KI270727v1_random"; transcript_id "MER4_15_KI270727v1_random"; locus "MER4_15_KI270727v1_random"; category "internal"; intModel "MER4-int"; locid "MER4-int_1054"; model_cov "958"; model_pct "14.5"; chr15_KI270727v1_random rmsk exon 131169 131556 669 - . gene_id "MER4_15_KI270727v1_random"; transcript_id "MER4_15_KI270727v1_random"; locus "MER4_15_KI270727v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1054"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "762"; repStart "-5501"; chr15_KI270727v1_random rmsk exon 131563 132108 2092 - . gene_id "MER4_15_KI270727v1_random"; transcript_id "MER4_15_KI270727v1_random"; locus "MER4_15_KI270727v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1054"; repClass "LTR"; repEnd "652"; repFamily "ERV1"; repLeft "29"; repStart "-5946"; ### ERV316A3_15_KI270727v1_random ### chr15_KI270727v1_random rmsk gene 320496 321212 . - . gene_id "ERV316A3_15_KI270727v1_random"; transcript_id "ERV316A3_15_KI270727v1_random"; locus "ERV316A3_15_KI270727v1_random"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3051"; model_cov "733"; model_pct "14.0"; chr15_KI270727v1_random rmsk exon 320496 321212 1075 - . gene_id "ERV316A3_15_KI270727v1_random"; transcript_id "ERV316A3_15_KI270727v1_random"; locus "ERV316A3_15_KI270727v1_random"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3051"; repClass "LTR"; repEnd "4136"; repFamily "ERVL"; repLeft "3403"; repStart "-1090"; ### HERVL74_15_KI270727v1_random ### chr15_KI270727v1_random rmsk gene 430087 433862 . - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; category "oneside"; intModel "HERVL74-int"; locid "HERVL74-int_0154"; model_cov "3491"; model_pct "61.4"; chr15_KI270727v1_random rmsk exon 430087 430433 795 - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; repName "MER74B"; geneRegion "ltr"; locid "HERVL74-int_0154"; repClass "LTR"; repEnd "410"; repFamily "ERVL"; repLeft "60"; repStart "-212"; chr15_KI270727v1_random rmsk exon 430492 430695 636 - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0154"; repClass "LTR"; repEnd "5597"; repFamily "ERVL"; repLeft "5393"; repStart "-88"; chr15_KI270727v1_random rmsk exon 430714 431337 1038 - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0154"; repClass "LTR"; repEnd "5268"; repFamily "ERVL"; repLeft "4611"; repStart "-417"; chr15_KI270727v1_random rmsk exon 431363 431540 522 - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0154"; repClass "LTR"; repEnd "4064"; repFamily "ERVL"; repLeft "3890"; repStart "-1621"; chr15_KI270727v1_random rmsk exon 431545 433862 4034 - . gene_id "HERVL74_15_KI270727v1_random"; transcript_id "HERVL74_15_KI270727v1_random"; locus "HERVL74_15_KI270727v1_random"; repName "HERVL74-int"; geneRegion "internal"; locid "HERVL74-int_0154"; repClass "LTR"; repEnd "3652"; repFamily "ERVL"; repLeft "1196"; repStart "-2033"; ### HERVL32_15_KI270727v1_random ### chr15_KI270727v1_random rmsk gene 447408 448247 . - . gene_id "HERVL32_15_KI270727v1_random"; transcript_id "HERVL32_15_KI270727v1_random"; locus "HERVL32_15_KI270727v1_random"; category "internal"; intModel "HERVL32-int"; locid "HERVL32-int_0067"; model_cov "839"; model_pct "24.5"; chr15_KI270727v1_random rmsk exon 447408 448247 2520 - . gene_id "HERVL32_15_KI270727v1_random"; transcript_id "HERVL32_15_KI270727v1_random"; locus "HERVL32_15_KI270727v1_random"; repName "HERVL32-int"; geneRegion "internal"; locid "HERVL32-int_0067"; repClass "LTR"; repEnd "2680"; repFamily "ERVL"; repLeft "1841"; repStart "-738"; ### ERV316A3_16_KI270728v1_random(a) ### chr16_KI270728v1_random rmsk gene 379102 380411 . + . gene_id "ERV316A3_16_KI270728v1_random(a)"; transcript_id "ERV316A3_16_KI270728v1_random(a)"; locus "ERV316A3_16_KI270728v1_random(a)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3052"; model_cov "919"; model_pct "17.6"; chr16_KI270728v1_random rmsk exon 379102 379392 540 + . gene_id "ERV316A3_16_KI270728v1_random(a)"; transcript_id "ERV316A3_16_KI270728v1_random(a)"; locus "ERV316A3_16_KI270728v1_random(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3052"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-2518"; repStart "2419"; chr16_KI270728v1_random rmsk exon 379405 379879 1075 + . gene_id "ERV316A3_16_KI270728v1_random(a)"; transcript_id "ERV316A3_16_KI270728v1_random(a)"; locus "ERV316A3_16_KI270728v1_random(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3052"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2505"; chr16_KI270728v1_random rmsk exon 380243 380411 1075 + . gene_id "ERV316A3_16_KI270728v1_random(a)"; transcript_id "ERV316A3_16_KI270728v1_random(a)"; locus "ERV316A3_16_KI270728v1_random(a)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3052"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2963"; ### ERV316A3_16_KI270728v1_random(b) ### chr16_KI270728v1_random rmsk gene 383268 384829 . + . gene_id "ERV316A3_16_KI270728v1_random(b)"; transcript_id "ERV316A3_16_KI270728v1_random(b)"; locus "ERV316A3_16_KI270728v1_random(b)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3053"; model_cov "1302"; model_pct "24.9"; chr16_KI270728v1_random rmsk exon 383268 384288 3121 + . gene_id "ERV316A3_16_KI270728v1_random(b)"; transcript_id "ERV316A3_16_KI270728v1_random(b)"; locus "ERV316A3_16_KI270728v1_random(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3053"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "-632"; repStart "3551"; chr16_KI270728v1_random rmsk exon 384421 384686 513 + . gene_id "ERV316A3_16_KI270728v1_random(b)"; transcript_id "ERV316A3_16_KI270728v1_random(b)"; locus "ERV316A3_16_KI270728v1_random(b)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3053"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4967"; chr16_KI270728v1_random rmsk exon 384690 384829 407 + . gene_id "ERV316A3_16_KI270728v1_random(b)"; transcript_id "ERV316A3_16_KI270728v1_random(b)"; locus "ERV316A3_16_KI270728v1_random(b)"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3053"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-294"; repStart "2"; ### ERV316A3_16_KI270728v1_random(c) ### chr16_KI270728v1_random rmsk gene 652260 653569 . + . gene_id "ERV316A3_16_KI270728v1_random(c)"; transcript_id "ERV316A3_16_KI270728v1_random(c)"; locus "ERV316A3_16_KI270728v1_random(c)"; category "internal"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3054"; model_cov "919"; model_pct "17.6"; chr16_KI270728v1_random rmsk exon 652260 652550 540 + . gene_id "ERV316A3_16_KI270728v1_random(c)"; transcript_id "ERV316A3_16_KI270728v1_random(c)"; locus "ERV316A3_16_KI270728v1_random(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3054"; repClass "LTR"; repEnd "2708"; repFamily "ERVL"; repLeft "-2518"; repStart "2419"; chr16_KI270728v1_random rmsk exon 652563 653037 1075 + . gene_id "ERV316A3_16_KI270728v1_random(c)"; transcript_id "ERV316A3_16_KI270728v1_random(c)"; locus "ERV316A3_16_KI270728v1_random(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3054"; repClass "LTR"; repEnd "2962"; repFamily "ERVL"; repLeft "-2264"; repStart "2505"; chr16_KI270728v1_random rmsk exon 653401 653569 1075 + . gene_id "ERV316A3_16_KI270728v1_random(c)"; transcript_id "ERV316A3_16_KI270728v1_random(c)"; locus "ERV316A3_16_KI270728v1_random(c)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3054"; repClass "LTR"; repEnd "3136"; repFamily "ERVL"; repLeft "-2090"; repStart "2963"; ### ERV316A3_16_KI270728v1_random(d) ### chr16_KI270728v1_random rmsk gene 656426 657987 . + . gene_id "ERV316A3_16_KI270728v1_random(d)"; transcript_id "ERV316A3_16_KI270728v1_random(d)"; locus "ERV316A3_16_KI270728v1_random(d)"; category "oneside"; intModel "ERV3-16A3_I-int"; locid "ERV3-16A3_I-int_3055"; model_cov "1302"; model_pct "24.9"; chr16_KI270728v1_random rmsk exon 656426 657446 3121 + . gene_id "ERV316A3_16_KI270728v1_random(d)"; transcript_id "ERV316A3_16_KI270728v1_random(d)"; locus "ERV316A3_16_KI270728v1_random(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3055"; repClass "LTR"; repEnd "4594"; repFamily "ERVL"; repLeft "-632"; repStart "3551"; chr16_KI270728v1_random rmsk exon 657579 657844 513 + . gene_id "ERV316A3_16_KI270728v1_random(d)"; transcript_id "ERV316A3_16_KI270728v1_random(d)"; locus "ERV316A3_16_KI270728v1_random(d)"; repName "ERV3-16A3_I-int"; geneRegion "internal"; locid "ERV3-16A3_I-int_3055"; repClass "LTR"; repEnd "5226"; repFamily "ERVL"; repLeft "0"; repStart "4967"; chr16_KI270728v1_random rmsk exon 657848 657987 407 + . gene_id "ERV316A3_16_KI270728v1_random(d)"; transcript_id "ERV316A3_16_KI270728v1_random(d)"; locus "ERV316A3_16_KI270728v1_random(d)"; repName "LTR16"; geneRegion "ltr"; locid "ERV3-16A3_I-int_3055"; repClass "LTR"; repEnd "144"; repFamily "ERVL"; repLeft "-294"; repStart "2"; ### MER4_16_KI270728v1_random ### chr16_KI270728v1_random rmsk gene 1245983 1250965 . + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; category "oneside"; intModel "MER4-int"; locid "MER4-int_1055"; model_cov "5531"; model_pct "83.8"; chr16_KI270728v1_random rmsk exon 1245983 1246902 9987 + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1055"; repClass "LTR"; repEnd "2332"; repFamily "ERV1"; repLeft "-4266"; repStart "794"; chr16_KI270728v1_random rmsk exon 1246969 1248001 9987 + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1055"; repClass "LTR"; repEnd "4065"; repFamily "ERV1"; repLeft "-2533"; repStart "2333"; chr16_KI270728v1_random rmsk exon 1248279 1250491 9987 + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1055"; repClass "LTR"; repEnd "6286"; repFamily "ERV1"; repLeft "-312"; repStart "4066"; chr16_KI270728v1_random rmsk exon 1250860 1250901 9987 + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1055"; repClass "LTR"; repEnd "6328"; repFamily "ERV1"; repLeft "-270"; repStart "6287"; chr16_KI270728v1_random rmsk exon 1250903 1250965 1531 + . gene_id "MER4_16_KI270728v1_random"; transcript_id "MER4_16_KI270728v1_random"; locus "MER4_16_KI270728v1_random"; repName "MER4A"; geneRegion "ltr"; locid "MER4-int_1055"; repClass "LTR"; repEnd "255"; repFamily "ERV1"; repLeft "-409"; repStart "193"; ### ERVLB4_16_KI270728v1_random(a) ### chr16_KI270728v1_random rmsk gene 1521483 1522026 . + . gene_id "ERVLB4_16_KI270728v1_random(a)"; transcript_id "ERVLB4_16_KI270728v1_random(a)"; locus "ERVLB4_16_KI270728v1_random(a)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2075"; model_cov "580"; model_pct "10.2"; chr16_KI270728v1_random rmsk exon 1521483 1522026 3155 + . gene_id "ERVLB4_16_KI270728v1_random(a)"; transcript_id "ERVLB4_16_KI270728v1_random(a)"; locus "ERVLB4_16_KI270728v1_random(a)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2075"; repClass "LTR"; repEnd "5362"; repFamily "ERVL"; repLeft "-352"; repStart "4782"; ### ERVLB4_16_KI270728v1_random(b) ### chr16_KI270728v1_random rmsk gene 1737927 1739039 . + . gene_id "ERVLB4_16_KI270728v1_random(b)"; transcript_id "ERVLB4_16_KI270728v1_random(b)"; locus "ERVLB4_16_KI270728v1_random(b)"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2076"; model_cov "1019"; model_pct "17.8"; chr16_KI270728v1_random rmsk exon 1737927 1738114 1006 + . gene_id "ERVLB4_16_KI270728v1_random(b)"; transcript_id "ERVLB4_16_KI270728v1_random(b)"; locus "ERVLB4_16_KI270728v1_random(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2076"; repClass "LTR"; repEnd "1144"; repFamily "ERVL"; repLeft "-4570"; repStart "957"; chr16_KI270728v1_random rmsk exon 1738235 1739039 3417 + . gene_id "ERVLB4_16_KI270728v1_random(b)"; transcript_id "ERVLB4_16_KI270728v1_random(b)"; locus "ERVLB4_16_KI270728v1_random(b)"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2076"; repClass "LTR"; repEnd "1967"; repFamily "ERVL"; repLeft "-3747"; repStart "1135"; ### HERVL66_17_GL000205v2_random(a) ### chr17_GL000205v2_random rmsk gene 40392 43993 . - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0058"; model_cov "3259"; model_pct "75.3"; chr17_GL000205v2_random rmsk exon 40392 40669 1739 - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0058"; repClass "LTR"; repEnd "610"; repFamily "ERVL"; repLeft "314"; repStart "0"; chr17_GL000205v2_random rmsk exon 40665 40868 1536 - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0058"; repClass "LTR"; repEnd "209"; repFamily "ERVL"; repLeft "6"; repStart "-401"; chr17_GL000205v2_random rmsk exon 40874 41433 3882 - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0058"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "3762"; repStart "0"; chr17_GL000205v2_random rmsk exon 41424 42314 3724 - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0058"; repClass "LTR"; repEnd "3595"; repFamily "ERVL"; repLeft "2656"; repStart "-734"; chr17_GL000205v2_random rmsk exon 42297 43993 8416 - . gene_id "HERVL66_17_GL000205v2_random(a)"; transcript_id "HERVL66_17_GL000205v2_random(a)"; locus "HERVL66_17_GL000205v2_random(a)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0058"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "44"; repStart "-2532"; ### HERVL66_17_GL000205v2_random(b) ### chr17_GL000205v2_random rmsk gene 67547 69869 . + . gene_id "HERVL66_17_GL000205v2_random(b)"; transcript_id "HERVL66_17_GL000205v2_random(b)"; locus "HERVL66_17_GL000205v2_random(b)"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0059"; model_cov "1748"; model_pct "40.4"; chr17_GL000205v2_random rmsk exon 67547 68067 3856 + . gene_id "HERVL66_17_GL000205v2_random(b)"; transcript_id "HERVL66_17_GL000205v2_random(b)"; locus "HERVL66_17_GL000205v2_random(b)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0059"; repClass "LTR"; repEnd "574"; repFamily "ERVL"; repLeft "-36"; repStart "1"; chr17_GL000205v2_random rmsk exon 68111 68145 3856 + . gene_id "HERVL66_17_GL000205v2_random(b)"; transcript_id "HERVL66_17_GL000205v2_random(b)"; locus "HERVL66_17_GL000205v2_random(b)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0059"; repClass "LTR"; repEnd "609"; repFamily "ERVL"; repLeft "-1"; repStart "575"; chr17_GL000205v2_random rmsk exon 68146 69869 12664 + . gene_id "HERVL66_17_GL000205v2_random(b)"; transcript_id "HERVL66_17_GL000205v2_random(b)"; locus "HERVL66_17_GL000205v2_random(b)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0059"; repClass "LTR"; repEnd "1749"; repFamily "ERVL"; repLeft "-2580"; repStart "1"; ### HERVL66_22_KI270733v1_random(a) ### chr22_KI270733v1_random rmsk gene 1 2575 . - . gene_id "HERVL66_22_KI270733v1_random(a)"; transcript_id "HERVL66_22_KI270733v1_random(a)"; locus "HERVL66_22_KI270733v1_random(a)"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0060"; model_cov "2089"; model_pct "48.3"; chr22_KI270733v1_random rmsk exon 1 491 3530 - . gene_id "HERVL66_22_KI270733v1_random(a)"; transcript_id "HERVL66_22_KI270733v1_random(a)"; locus "HERVL66_22_KI270733v1_random(a)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0060"; repClass "LTR"; repEnd "3133"; repFamily "ERVL"; repLeft "2654"; repStart "-1196"; chr22_KI270733v1_random rmsk exon 472 2071 11484 - . gene_id "HERVL66_22_KI270733v1_random(a)"; transcript_id "HERVL66_22_KI270733v1_random(a)"; locus "HERVL66_22_KI270733v1_random(a)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0060"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "187"; repStart "-2532"; chr22_KI270733v1_random rmsk exon 2072 2575 3597 - . gene_id "HERVL66_22_KI270733v1_random(a)"; transcript_id "HERVL66_22_KI270733v1_random(a)"; locus "HERVL66_22_KI270733v1_random(a)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0060"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "1"; repStart "-62"; ### HERVL40_22_KI270733v1_random ### chr22_KI270733v1_random rmsk gene 52124 53880 . - . gene_id "HERVL40_22_KI270733v1_random"; transcript_id "HERVL40_22_KI270733v1_random"; locus "HERVL40_22_KI270733v1_random"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0514"; model_cov "719"; model_pct "13.0"; chr22_KI270733v1_random rmsk exon 52124 52286 536 - . gene_id "HERVL40_22_KI270733v1_random"; transcript_id "HERVL40_22_KI270733v1_random"; locus "HERVL40_22_KI270733v1_random"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0514"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chr22_KI270733v1_random rmsk exon 53328 53642 542 - . gene_id "HERVL40_22_KI270733v1_random"; transcript_id "HERVL40_22_KI270733v1_random"; locus "HERVL40_22_KI270733v1_random"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0514"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2843"; repStart "-2367"; chr22_KI270733v1_random rmsk exon 53660 53880 448 - . gene_id "HERVL40_22_KI270733v1_random"; transcript_id "HERVL40_22_KI270733v1_random"; locus "HERVL40_22_KI270733v1_random"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0514"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2580"; repStart "-2718"; ### HERVL66_22_KI270733v1_random(b) ### chr22_KI270733v1_random rmsk gene 77984 79475 . + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0061"; model_cov "1088"; model_pct "25.1"; chr22_KI270733v1_random rmsk exon 77984 78181 1256 + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0061"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1591"; chr22_KI270733v1_random rmsk exon 78162 78751 4012 + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0061"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2654"; chr22_KI270733v1_random rmsk exon 78750 78960 1074 + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0061"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chr22_KI270733v1_random rmsk exon 78963 79360 2482 + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0061"; repClass "LTR"; repEnd "402"; repFamily "ERVL"; repLeft "-208"; repStart "3"; chr22_KI270733v1_random rmsk exon 79360 79475 593 + . gene_id "HERVL66_22_KI270733v1_random(b)"; transcript_id "HERVL66_22_KI270733v1_random(b)"; locus "HERVL66_22_KI270733v1_random(b)"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0061"; repClass "LTR"; repEnd "439"; repFamily "ERVL"; repLeft "-171"; repStart "331"; ### ERVLB4_22_KI270733v1_random ### chr22_KI270733v1_random rmsk gene 108006 108752 . - . gene_id "ERVLB4_22_KI270733v1_random"; transcript_id "ERVLB4_22_KI270733v1_random"; locus "ERVLB4_22_KI270733v1_random"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2078"; model_cov "752"; model_pct "13.2"; chr22_KI270733v1_random rmsk exon 108006 108752 3120 - . gene_id "ERVLB4_22_KI270733v1_random"; transcript_id "ERVLB4_22_KI270733v1_random"; locus "ERVLB4_22_KI270733v1_random"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2078"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### HERVL66_Un_GL000195v1 ### chrUn_GL000195v1 rmsk gene 9900 13721 . + . gene_id "HERVL66_Un_GL000195v1"; transcript_id "HERVL66_Un_GL000195v1"; locus "HERVL66_Un_GL000195v1"; category "prototype"; intModel "HERVL66-int"; locid "HERVL66-int_0062"; model_cov "3285"; model_pct "75.9"; chrUn_GL000195v1 rmsk exon 9900 10401 3570 + . gene_id "HERVL66_Un_GL000195v1"; transcript_id "HERVL66_Un_GL000195v1"; locus "HERVL66_Un_GL000195v1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0062"; repClass "LTR"; repEnd "548"; repFamily "ERVL"; repLeft "-62"; repStart "3"; chrUn_GL000195v1 rmsk exon 10402 12001 11375 + . gene_id "HERVL66_Un_GL000195v1"; transcript_id "HERVL66_Un_GL000195v1"; locus "HERVL66_Un_GL000195v1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0062"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "187"; chrUn_GL000195v1 rmsk exon 11982 13384 5239 + . gene_id "HERVL66_Un_GL000195v1"; transcript_id "HERVL66_Un_GL000195v1"; locus "HERVL66_Un_GL000195v1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0062"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "2654"; chrUn_GL000195v1 rmsk exon 13385 13721 2288 + . gene_id "HERVL66_Un_GL000195v1"; transcript_id "HERVL66_Un_GL000195v1"; locus "HERVL66_Un_GL000195v1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0062"; repClass "LTR"; repEnd "365"; repFamily "ERVL"; repLeft "-245"; repStart "1"; ### HERVL40_Un_GL000195v1 ### chrUn_GL000195v1 rmsk gene 39512 40187 . + . gene_id "HERVL40_Un_GL000195v1"; transcript_id "HERVL40_Un_GL000195v1"; locus "HERVL40_Un_GL000195v1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0515"; model_cov "719"; model_pct "13.0"; chrUn_GL000195v1 rmsk exon 39512 39687 410 + . gene_id "HERVL40_Un_GL000195v1"; transcript_id "HERVL40_Un_GL000195v1"; locus "HERVL40_Un_GL000195v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0515"; repClass "LTR"; repEnd "2770"; repFamily "ERVL"; repLeft "-2760"; repStart "2580"; chrUn_GL000195v1 rmsk exon 39693 39908 726 + . gene_id "HERVL40_Un_GL000195v1"; transcript_id "HERVL40_Un_GL000195v1"; locus "HERVL40_Un_GL000195v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0515"; repClass "LTR"; repEnd "3160"; repFamily "ERVL"; repLeft "-2370"; repStart "2942"; chrUn_GL000195v1 rmsk exon 39979 40187 383 + . gene_id "HERVL40_Un_GL000195v1"; transcript_id "HERVL40_Un_GL000195v1"; locus "HERVL40_Un_GL000195v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0515"; repClass "LTR"; repEnd "3609"; repFamily "ERVL"; repLeft "-1921"; repStart "3298"; ### MER4_Un_GL000213v1 ### chrUn_GL000213v1 rmsk gene 102320 103267 . - . gene_id "MER4_Un_GL000213v1"; transcript_id "MER4_Un_GL000213v1"; locus "MER4_Un_GL000213v1"; category "internal"; intModel "MER4-int"; locid "MER4-int_1056"; model_cov "954"; model_pct "14.5"; chrUn_GL000213v1 rmsk exon 102320 102544 750 - . gene_id "MER4_Un_GL000213v1"; transcript_id "MER4_Un_GL000213v1"; locus "MER4_Un_GL000213v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1056"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "849"; repStart "-5501"; chrUn_GL000213v1 rmsk exon 102638 102717 439 - . gene_id "MER4_Un_GL000213v1"; transcript_id "MER4_Un_GL000213v1"; locus "MER4_Un_GL000213v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1056"; repClass "LTR"; repEnd "-643"; repFamily "ERV1"; repLeft "-723"; repStart "-7241"; chrUn_GL000213v1 rmsk exon 102722 103267 2189 - . gene_id "MER4_Un_GL000213v1"; transcript_id "MER4_Un_GL000213v1"; locus "MER4_Un_GL000213v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1056"; repClass "LTR"; repEnd "655"; repFamily "ERV1"; repLeft "29"; repStart "-5943"; ### HML1_Un_GL000214v1 ### chrUn_GL000214v1 rmsk gene 3747 5805 . + . gene_id "HML1_Un_GL000214v1"; transcript_id "HML1_Un_GL000214v1"; locus "HML1_Un_GL000214v1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0160"; model_cov "1888"; model_pct "31.0"; chrUn_GL000214v1 rmsk exon 3747 4030 2048 + . gene_id "HML1_Un_GL000214v1"; transcript_id "HML1_Un_GL000214v1"; locus "HML1_Un_GL000214v1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0160"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrUn_GL000214v1 rmsk exon 4031 5805 12363 + . gene_id "HML1_Un_GL000214v1"; transcript_id "HML1_Un_GL000214v1"; locus "HML1_Un_GL000214v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0160"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "1"; ### HML3_Un_GL000214v1 ### chrUn_GL000214v1 rmsk gene 5806 9679 . + . gene_id "HML3_Un_GL000214v1"; transcript_id "HML3_Un_GL000214v1"; locus "HML3_Un_GL000214v1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0295"; model_cov "3336"; model_pct "55.4"; chrUn_GL000214v1 rmsk exon 5806 6318 4228 + . gene_id "HML3_Un_GL000214v1"; transcript_id "HML3_Un_GL000214v1"; locus "HML3_Un_GL000214v1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0295"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrUn_GL000214v1 rmsk exon 6332 9123 20845 + . gene_id "HML3_Un_GL000214v1"; transcript_id "HML3_Un_GL000214v1"; locus "HML3_Un_GL000214v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0295"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "12"; chrUn_GL000214v1 rmsk exon 9124 9353 1817 + . gene_id "HML3_Un_GL000214v1"; transcript_id "HML3_Un_GL000214v1"; locus "HML3_Un_GL000214v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0295"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chrUn_GL000214v1 rmsk exon 9355 9679 2190 + . gene_id "HML3_Un_GL000214v1"; transcript_id "HML3_Un_GL000214v1"; locus "HML3_Un_GL000214v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0295"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### HML3_Un_GL000218v1 ### chrUn_GL000218v1 rmsk gene 118102 121917 . - . gene_id "HML3_Un_GL000218v1"; transcript_id "HML3_Un_GL000218v1"; locus "HML3_Un_GL000218v1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0296"; model_cov "3346"; model_pct "55.6"; chrUn_GL000218v1 rmsk exon 118102 118425 2330 - . gene_id "HML3_Un_GL000218v1"; transcript_id "HML3_Un_GL000218v1"; locus "HML3_Un_GL000218v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0296"; repClass "LTR"; repEnd "4915"; repFamily "ERVK"; repLeft "4595"; repStart "-1106"; chrUn_GL000218v1 rmsk exon 118427 118656 1796 - . gene_id "HML3_Un_GL000218v1"; transcript_id "HML3_Un_GL000218v1"; locus "HML3_Un_GL000218v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0296"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chrUn_GL000218v1 rmsk exon 118657 121461 21782 - . gene_id "HML3_Un_GL000218v1"; transcript_id "HML3_Un_GL000218v1"; locus "HML3_Un_GL000218v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0296"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chrUn_GL000218v1 rmsk exon 121462 121917 3345 - . gene_id "HML3_Un_GL000218v1"; transcript_id "HML3_Un_GL000218v1"; locus "HML3_Un_GL000218v1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0296"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_Un_GL000218v1 ### chrUn_GL000218v1 rmsk gene 121918 123976 . - . gene_id "HML1_Un_GL000218v1"; transcript_id "HML1_Un_GL000218v1"; locus "HML1_Un_GL000218v1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0161"; model_cov "1786"; model_pct "29.3"; chrUn_GL000218v1 rmsk exon 121918 123601 12996 - . gene_id "HML1_Un_GL000218v1"; transcript_id "HML1_Un_GL000218v1"; locus "HML1_Un_GL000218v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0161"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "204"; repStart "-4207"; chrUn_GL000218v1 rmsk exon 123596 123696 655 - . gene_id "HML1_Un_GL000218v1"; transcript_id "HML1_Un_GL000218v1"; locus "HML1_Un_GL000218v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0161"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "1"; repStart "-5994"; chrUn_GL000218v1 rmsk exon 123697 123976 1940 - . gene_id "HML1_Un_GL000218v1"; transcript_id "HML1_Un_GL000218v1"; locus "HML1_Un_GL000218v1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0161"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HERVL40_Un_GL000220v1 ### chrUn_GL000220v1 rmsk gene 35209 36963 . - . gene_id "HERVL40_Un_GL000220v1"; transcript_id "HERVL40_Un_GL000220v1"; locus "HERVL40_Un_GL000220v1"; category "internal"; intModel "HERVL40-int"; locid "HERVL40-int_0516"; model_cov "719"; model_pct "13.0"; chrUn_GL000220v1 rmsk exon 35209 35371 511 - . gene_id "HERVL40_Un_GL000220v1"; transcript_id "HERVL40_Un_GL000220v1"; locus "HERVL40_Un_GL000220v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0516"; repClass "LTR"; repEnd "4290"; repFamily "ERVL"; repLeft "4123"; repStart "-1240"; chrUn_GL000220v1 rmsk exon 36411 36725 541 - . gene_id "HERVL40_Un_GL000220v1"; transcript_id "HERVL40_Un_GL000220v1"; locus "HERVL40_Un_GL000220v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0516"; repClass "LTR"; repEnd "3163"; repFamily "ERVL"; repLeft "2843"; repStart "-2367"; chrUn_GL000220v1 rmsk exon 36743 36963 419 - . gene_id "HERVL40_Un_GL000220v1"; transcript_id "HERVL40_Un_GL000220v1"; locus "HERVL40_Un_GL000220v1"; repName "HERVL40-int"; geneRegion "internal"; locid "HERVL40-int_0516"; repClass "LTR"; repEnd "2812"; repFamily "ERVL"; repLeft "2580"; repStart "-2718"; ### HERVL66_Un_GL000220v1 ### chrUn_GL000220v1 rmsk gene 61160 62631 . + . gene_id "HERVL66_Un_GL000220v1"; transcript_id "HERVL66_Un_GL000220v1"; locus "HERVL66_Un_GL000220v1"; category "oneside"; intModel "HERVL66-int"; locid "HERVL66-int_0063"; model_cov "972"; model_pct "22.5"; chrUn_GL000220v1 rmsk exon 61160 61243 552 + . gene_id "HERVL66_Un_GL000220v1"; transcript_id "HERVL66_Un_GL000220v1"; locus "HERVL66_Un_GL000220v1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0063"; repClass "LTR"; repEnd "1797"; repFamily "ERVL"; repLeft "-2532"; repStart "1713"; chrUn_GL000220v1 rmsk exon 61215 61813 4285 + . gene_id "HERVL66_Un_GL000220v1"; transcript_id "HERVL66_Un_GL000220v1"; locus "HERVL66_Un_GL000220v1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0063"; repClass "LTR"; repEnd "3242"; repFamily "ERVL"; repLeft "-1087"; repStart "2648"; chrUn_GL000220v1 rmsk exon 61812 62022 1127 + . gene_id "HERVL66_Un_GL000220v1"; transcript_id "HERVL66_Un_GL000220v1"; locus "HERVL66_Un_GL000220v1"; repName "HERVL66-int"; geneRegion "internal"; locid "HERVL66-int_0063"; repClass "LTR"; repEnd "4329"; repFamily "ERVL"; repLeft "0"; repStart "4035"; chrUn_GL000220v1 rmsk exon 62025 62631 2695 + . gene_id "HERVL66_Un_GL000220v1"; transcript_id "HERVL66_Un_GL000220v1"; locus "HERVL66_Un_GL000220v1"; repName "LTR66"; geneRegion "ltr"; locid "HERVL66-int_0063"; repClass "LTR"; repEnd "470"; repFamily "ERVL"; repLeft "-140"; repStart "3"; ### ERVLB4_Un_GL000220v1 ### chrUn_GL000220v1 rmsk gene 91267 92019 . - . gene_id "ERVLB4_Un_GL000220v1"; transcript_id "ERVLB4_Un_GL000220v1"; locus "ERVLB4_Un_GL000220v1"; category "internal"; intModel "ERVL-B4-int"; locid "ERVL-B4-int_2079"; model_cov "752"; model_pct "13.2"; chrUn_GL000220v1 rmsk exon 91267 92019 3203 - . gene_id "ERVLB4_Un_GL000220v1"; transcript_id "ERVLB4_Un_GL000220v1"; locus "ERVLB4_Un_GL000220v1"; repName "ERVL-B4-int"; geneRegion "internal"; locid "ERVL-B4-int_2079"; repClass "LTR"; repEnd "4592"; repFamily "ERVL"; repLeft "3840"; repStart "-1122"; ### MER101_Un_GL000224v1 ### chrUn_GL000224v1 rmsk gene 79122 82501 . + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0478"; model_cov "3654"; model_pct "55.0"; chrUn_GL000224v1 rmsk exon 79122 79965 3054 + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0478"; repClass "LTR"; repEnd "2938"; repFamily "ERV1"; repLeft "-3701"; repStart "1699"; chrUn_GL000224v1 rmsk exon 79963 80211 1588 + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0478"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "-1697"; repStart "4658"; chrUn_GL000224v1 rmsk exon 80455 81555 2961 + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0478"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-1237"; repStart "3913"; chrUn_GL000224v1 rmsk exon 81554 82173 1881 + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0478"; repClass "LTR"; repEnd "6637"; repFamily "ERV1"; repLeft "-2"; repStart "5995"; chrUn_GL000224v1 rmsk exon 82182 82501 2047 + . gene_id "MER101_Un_GL000224v1"; transcript_id "MER101_Un_GL000224v1"; locus "MER101_Un_GL000224v1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0478"; repClass "LTR"; repEnd "322"; repFamily "ERV1"; repLeft "-123"; repStart "2"; ### HERV3_Un_GL000224v1 ### chrUn_GL000224v1 rmsk gene 95884 101856 . + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0113"; model_cov "4859"; model_pct "57.7"; chrUn_GL000224v1 rmsk exon 95884 95961 549 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "480"; chrUn_GL000224v1 rmsk exon 95980 97696 6849 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "1704"; repFamily "ERV1"; repLeft "-6722"; repStart "19"; chrUn_GL000224v1 rmsk exon 97796 98166 4105 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "2008"; repFamily "ERV1"; repLeft "-6418"; repStart "1634"; chrUn_GL000224v1 rmsk exon 98475 98940 4105 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "-5957"; repStart "2009"; chrUn_GL000224v1 rmsk exon 98912 99034 472 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "3793"; repFamily "ERV1"; repLeft "-4633"; repStart "3669"; chrUn_GL000224v1 rmsk exon 99072 99466 2053 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "5531"; repFamily "ERV1"; repLeft "-2895"; repStart "5142"; chrUn_GL000224v1 rmsk exon 99467 101302 7800 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "6599"; chrUn_GL000224v1 rmsk exon 101305 101856 3810 + . gene_id "HERV3_Un_GL000224v1"; transcript_id "HERV3_Un_GL000224v1"; locus "HERV3_Un_GL000224v1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0113"; repClass "LTR"; repEnd "542"; repFamily "ERV1"; repLeft "-17"; repStart "1"; ### PRIMA41_Un_KI270442v1 ### chrUn_KI270442v1 rmsk gene 284691 290804 . - . gene_id "PRIMA41_Un_KI270442v1"; transcript_id "PRIMA41_Un_KI270442v1"; locus "PRIMA41_Un_KI270442v1"; category "internal"; intModel "PRIMA41-int"; locid "PRIMA41-int_0199"; model_cov "4579"; model_pct "59.0"; chrUn_KI270442v1 rmsk exon 284691 286291 10629 - . gene_id "PRIMA41_Un_KI270442v1"; transcript_id "PRIMA41_Un_KI270442v1"; locus "PRIMA41_Un_KI270442v1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0199"; repClass "LTR"; repEnd "6163"; repFamily "ERV1"; repLeft "4516"; repStart "-1593"; chrUn_KI270442v1 rmsk exon 286940 289683 10629 - . gene_id "PRIMA41_Un_KI270442v1"; transcript_id "PRIMA41_Un_KI270442v1"; locus "PRIMA41_Un_KI270442v1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0199"; repClass "LTR"; repEnd "4515"; repFamily "ERV1"; repLeft "1734"; repStart "-3241"; chrUn_KI270442v1 rmsk exon 290648 290804 10629 - . gene_id "PRIMA41_Un_KI270442v1"; transcript_id "PRIMA41_Un_KI270442v1"; locus "PRIMA41_Un_KI270442v1"; repName "PRIMA41-int"; geneRegion "internal"; locid "PRIMA41-int_0199"; repClass "LTR"; repEnd "1733"; repFamily "ERV1"; repLeft "1582"; repStart "-6023"; ### MER101_Un_KI270741v1 ### chrUn_KI270741v1 rmsk gene 20343 24396 . + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; category "oneside"; intModel "MER101-int"; locid "MER101-int_0479"; model_cov "3781"; model_pct "57.0"; chrUn_KI270741v1 rmsk exon 20343 20466 438 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "211"; repFamily "ERV1"; repLeft "-6428"; repStart "82"; chrUn_KI270741v1 rmsk exon 20769 20781 350 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "2825"; repFamily "ERV1"; repLeft "-3814"; repStart "2814"; chrUn_KI270741v1 rmsk exon 21001 21861 3381 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "3522"; repFamily "ERV1"; repLeft "-3117"; repStart "2308"; chrUn_KI270741v1 rmsk exon 21847 22107 1882 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "4942"; repFamily "ERV1"; repLeft "-1697"; repStart "4646"; chrUn_KI270741v1 rmsk exon 22351 23451 3298 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "5402"; repFamily "ERV1"; repLeft "-1237"; repStart "3913"; chrUn_KI270741v1 rmsk exon 23450 24069 2145 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER101-int"; geneRegion "internal"; locid "MER101-int_0479"; repClass "LTR"; repEnd "6637"; repFamily "ERV1"; repLeft "-2"; repStart "5995"; chrUn_KI270741v1 rmsk exon 24078 24396 2265 + . gene_id "MER101_Un_KI270741v1"; transcript_id "MER101_Un_KI270741v1"; locus "MER101_Un_KI270741v1"; repName "MER65A"; geneRegion "ltr"; locid "MER101-int_0479"; repClass "LTR"; repEnd "322"; repFamily "ERV1"; repLeft "-123"; repStart "2"; ### HERV3_Un_KI270741v1 ### chrUn_KI270741v1 rmsk gene 37767 43745 . + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; category "prototype"; intModel "HERV3-int"; locid "HERV3-int_0114"; model_cov "4859"; model_pct "57.7"; chrUn_KI270741v1 rmsk exon 37767 37844 547 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "559"; repFamily "ERV1"; repLeft "0"; repStart "480"; chrUn_KI270741v1 rmsk exon 37863 39579 6794 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "1704"; repFamily "ERV1"; repLeft "-6722"; repStart "19"; chrUn_KI270741v1 rmsk exon 39679 40049 4115 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "2008"; repFamily "ERV1"; repLeft "-6418"; repStart "1634"; chrUn_KI270741v1 rmsk exon 40359 40821 4115 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "2469"; repFamily "ERV1"; repLeft "-5957"; repStart "2009"; chrUn_KI270741v1 rmsk exon 40793 40915 477 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "3793"; repFamily "ERV1"; repLeft "-4633"; repStart "3669"; chrUn_KI270741v1 rmsk exon 40951 41345 2059 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "5531"; repFamily "ERV1"; repLeft "-2895"; repStart "5142"; chrUn_KI270741v1 rmsk exon 41346 43181 7833 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "HERV3-int"; geneRegion "internal"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "8426"; repFamily "ERV1"; repLeft "0"; repStart "6599"; chrUn_KI270741v1 rmsk exon 43184 43745 3819 + . gene_id "HERV3_Un_KI270741v1"; transcript_id "HERV3_Un_KI270741v1"; locus "HERV3_Un_KI270741v1"; repName "LTR61"; geneRegion "ltr"; locid "HERV3-int_0114"; repClass "LTR"; repEnd "552"; repFamily "ERV1"; repLeft "-7"; repStart "1"; ### HML3_Un_KI270742v1 ### chrUn_KI270742v1 rmsk gene 130641 134514 . - . gene_id "HML3_Un_KI270742v1"; transcript_id "HML3_Un_KI270742v1"; locus "HML3_Un_KI270742v1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0298"; model_cov "3347"; model_pct "55.6"; chrUn_KI270742v1 rmsk exon 130641 130965 2301 - . gene_id "HML3_Un_KI270742v1"; transcript_id "HML3_Un_KI270742v1"; locus "HML3_Un_KI270742v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0298"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "4595"; repStart "-1105"; chrUn_KI270742v1 rmsk exon 130967 131196 2006 - . gene_id "HML3_Un_KI270742v1"; transcript_id "HML3_Un_KI270742v1"; locus "HML3_Un_KI270742v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0298"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chrUn_KI270742v1 rmsk exon 131197 134001 22240 - . gene_id "HML3_Un_KI270742v1"; transcript_id "HML3_Un_KI270742v1"; locus "HML3_Un_KI270742v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0298"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "1"; repStart "-3223"; chrUn_KI270742v1 rmsk exon 134002 134514 4346 - . gene_id "HML3_Un_KI270742v1"; transcript_id "HML3_Un_KI270742v1"; locus "HML3_Un_KI270742v1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0298"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_Un_KI270742v1 ### chrUn_KI270742v1 rmsk gene 134515 136644 . - . gene_id "HML1_Un_KI270742v1"; transcript_id "HML1_Un_KI270742v1"; locus "HML1_Un_KI270742v1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0162"; model_cov "1871"; model_pct "30.7"; chrUn_KI270742v1 rmsk exon 134515 135404 7079 - . gene_id "HML1_Un_KI270742v1"; transcript_id "HML1_Un_KI270742v1"; locus "HML1_Un_KI270742v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0162"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "998"; repStart "-4207"; chrUn_KI270742v1 rmsk exon 135489 136360 6132 - . gene_id "HML1_Un_KI270742v1"; transcript_id "HML1_Un_KI270742v1"; locus "HML1_Un_KI270742v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0162"; repClass "LTR"; repEnd "981"; repFamily "ERVK"; repLeft "1"; repStart "-5115"; chrUn_KI270742v1 rmsk exon 136361 136644 2183 - . gene_id "HML1_Un_KI270742v1"; transcript_id "HML1_Un_KI270742v1"; locus "HML1_Un_KI270742v1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0162"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_Un_KI270743v1 ### chrUn_KI270743v1 rmsk gene 41605 43660 . + . gene_id "HML1_Un_KI270743v1"; transcript_id "HML1_Un_KI270743v1"; locus "HML1_Un_KI270743v1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0163"; model_cov "1786"; model_pct "29.3"; chrUn_KI270743v1 rmsk exon 41605 41884 1871 + . gene_id "HML1_Un_KI270743v1"; transcript_id "HML1_Un_KI270743v1"; locus "HML1_Un_KI270743v1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0163"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrUn_KI270743v1 rmsk exon 41885 41985 628 + . gene_id "HML1_Un_KI270743v1"; transcript_id "HML1_Un_KI270743v1"; locus "HML1_Un_KI270743v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0163"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "-5994"; repStart "1"; chrUn_KI270743v1 rmsk exon 41980 43660 12709 + . gene_id "HML1_Un_KI270743v1"; transcript_id "HML1_Un_KI270743v1"; locus "HML1_Un_KI270743v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0163"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "-4207"; repStart "204"; ### HML3_Un_KI270743v1 ### chrUn_KI270743v1 rmsk gene 43661 47466 . + . gene_id "HML3_Un_KI270743v1"; transcript_id "HML3_Un_KI270743v1"; locus "HML3_Un_KI270743v1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0299"; model_cov "3347"; model_pct "55.6"; chrUn_KI270743v1 rmsk exon 43661 44111 3286 + . gene_id "HML3_Un_KI270743v1"; transcript_id "HML3_Un_KI270743v1"; locus "HML3_Un_KI270743v1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0299"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrUn_KI270743v1 rmsk exon 44112 46910 21625 + . gene_id "HML3_Un_KI270743v1"; transcript_id "HML3_Un_KI270743v1"; locus "HML3_Un_KI270743v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0299"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "-3223"; repStart "1"; chrUn_KI270743v1 rmsk exon 46911 47140 1836 + . gene_id "HML3_Un_KI270743v1"; transcript_id "HML3_Un_KI270743v1"; locus "HML3_Un_KI270743v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0299"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "-2069"; repStart "3723"; chrUn_KI270743v1 rmsk exon 47142 47466 2345 + . gene_id "HML3_Un_KI270743v1"; transcript_id "HML3_Un_KI270743v1"; locus "HML3_Un_KI270743v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0299"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "-1105"; repStart "4595"; ### MER4_Un_KI270743v1 ### chrUn_KI270743v1 rmsk gene 114512 115500 . - . gene_id "MER4_Un_KI270743v1"; transcript_id "MER4_Un_KI270743v1"; locus "MER4_Un_KI270743v1"; category "internal"; intModel "MER4-int"; locid "MER4-int_1057"; model_cov "942"; model_pct "14.3"; chrUn_KI270743v1 rmsk exon 114512 114719 610 - . gene_id "MER4_Un_KI270743v1"; transcript_id "MER4_Un_KI270743v1"; locus "MER4_Un_KI270743v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1057"; repClass "LTR"; repEnd "1097"; repFamily "ERV1"; repLeft "865"; repStart "-5501"; chrUn_KI270743v1 rmsk exon 114847 114932 409 - . gene_id "MER4_Un_KI270743v1"; transcript_id "MER4_Un_KI270743v1"; locus "MER4_Un_KI270743v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1057"; repClass "LTR"; repEnd "-637"; repFamily "ERV1"; repLeft "-723"; repStart "-7235"; chrUn_KI270743v1 rmsk exon 114938 115500 2163 - . gene_id "MER4_Un_KI270743v1"; transcript_id "MER4_Un_KI270743v1"; locus "MER4_Un_KI270743v1"; repName "MER4-int"; geneRegion "internal"; locid "MER4-int_1057"; repClass "LTR"; repEnd "653"; repFamily "ERV1"; repLeft "29"; repStart "-5945"; ### HML3_Un_KI270751v1 ### chrUn_KI270751v1 rmsk gene 94396 98269 . - . gene_id "HML3_Un_KI270751v1"; transcript_id "HML3_Un_KI270751v1"; locus "HML3_Un_KI270751v1"; category "oneside"; intModel "HERVK9-int"; locid "HERVK9-int_0300"; model_cov "3336"; model_pct "55.4"; chrUn_KI270751v1 rmsk exon 94396 94720 2356 - . gene_id "HML3_Un_KI270751v1"; transcript_id "HML3_Un_KI270751v1"; locus "HML3_Un_KI270751v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0300"; repClass "LTR"; repEnd "4916"; repFamily "ERVK"; repLeft "4595"; repStart "-1105"; chrUn_KI270751v1 rmsk exon 94722 94951 1949 - . gene_id "HML3_Un_KI270751v1"; transcript_id "HML3_Un_KI270751v1"; locus "HML3_Un_KI270751v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0300"; repClass "LTR"; repEnd "3952"; repFamily "ERVK"; repLeft "3723"; repStart "-2069"; chrUn_KI270751v1 rmsk exon 94952 97743 22346 - . gene_id "HML3_Un_KI270751v1"; transcript_id "HML3_Un_KI270751v1"; locus "HML3_Un_KI270751v1"; repName "HERVK9-int"; geneRegion "internal"; locid "HERVK9-int_0300"; repClass "LTR"; repEnd "2798"; repFamily "ERVK"; repLeft "12"; repStart "-3223"; chrUn_KI270751v1 rmsk exon 97757 98269 4496 - . gene_id "HML3_Un_KI270751v1"; transcript_id "HML3_Un_KI270751v1"; locus "HML3_Un_KI270751v1"; repName "MER9a2"; geneRegion "ltr"; locid "HERVK9-int_0300"; repClass "LTR"; repEnd "513"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML1_Un_KI270751v1 ### chrUn_KI270751v1 rmsk gene 98270 100328 . - . gene_id "HML1_Un_KI270751v1"; transcript_id "HML1_Un_KI270751v1"; locus "HML1_Un_KI270751v1"; category "oneside"; intModel "HERVK14-int"; locid "HERVK14-int_0164"; model_cov "1888"; model_pct "31.0"; chrUn_KI270751v1 rmsk exon 98270 100044 13258 - . gene_id "HML1_Un_KI270751v1"; transcript_id "HML1_Un_KI270751v1"; locus "HML1_Un_KI270751v1"; repName "HERVK14-int"; geneRegion "internal"; locid "HERVK14-int_0164"; repClass "LTR"; repEnd "1889"; repFamily "ERVK"; repLeft "1"; repStart "-4207"; chrUn_KI270751v1 rmsk exon 100045 100328 2188 - . gene_id "HML1_Un_KI270751v1"; transcript_id "HML1_Un_KI270751v1"; locus "HML1_Un_KI270751v1"; repName "LTR14A"; geneRegion "ltr"; locid "HERVK14-int_0164"; repClass "LTR"; repEnd "344"; repFamily "ERVK"; repLeft "1"; repStart "0";